HHsearch results for GI: 254780353 and protein with PDBid: 3ku8_A
>3ku8_A GYRA14, DNA gyrase subunit A; alpha+beta, SH3 domain, topoisomerase, toxin-isomerase compl; HET: DNA; 1.93A {Escherichia coli} PDB: 1x75_A* 3kua_A*
Probab=99.95 E-value=2e-29 Score=239.21 Aligned_cols=110 Identities=34% Similarity=0.497 Sum_probs=103.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC---CCCCCCCC-----------------
Q ss_conf 9989999899999999999999999999999999864107899997520000---11000000-----------------
Q gi|254780353|r 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSR----------------- 420 (753)
Q Consensus 361 l~~f~~~R~~vi~rr~~~~L~k~~~RlhIleGl~~a~~~ID~vI~iIR~s~~---~k~~L~~~----------------- 420 (753)
-..|+.||.+||+|||+|+|+|+++|+||||||++|++|||+||+|||+|++ |+..||.+
T Consensus 10 ~s~~l~~R~~vItRRt~f~L~Ka~eR~HILeGL~iAl~nID~VI~IIR~S~d~~eAk~~L~~~~w~~~~~~~~~~~~~~~ 89 (156)
T 3ku8_A 10 HSSGLVPRGSHMTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERAGDD 89 (156)
T ss_dssp ------------CCHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHCSSHHHHHHHHHHSCEECTTHHHHGGGSSTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCH
T ss_conf 05477776668788679779999998999999999999499999999828982689999998530202168999982330
Q ss_pred -----------------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
Q ss_conf -----------------25775778899887899998899997666789999887765442039788
Q gi|254780353|r 421 -----------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQ 470 (753)
Q Consensus 421 -----------------f~lse~QA~aIL~mrL~rLt~le~~kl~~E~~eL~~~i~~L~~IL~s~~~ 470 (753)
|+||+.||+|||+|||+|||+||++++.+|+++|.++|++|++||+|+++
T Consensus 90 ~~~~~~~~~~~~~~~~~y~LSe~QA~AILemrL~rLT~LE~ekl~~E~~eL~~~I~~l~~IL~~~~r 156 (156)
T 3ku8_A 90 AARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRILGSADR 156 (156)
T ss_dssp TTSCTTCCTTSEEETTEEECCHHHHHHHHTCBGGGGSHHHHHHHHHHHHHHHHHHHHHHHTCCSCC-
T ss_pred HHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 0020002310034455453799999999996999998778999999999999999999998768888