BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= gi|254780353|ref|YP_003064766.1| DNA topoisomerase IV subunit A [Candidatus Liberibacter asiaticus str. psy62] (753 letters) Database: nr 14,124,377 sequences; 4,842,793,630 total letters Searching..................................................done Results from round 1 >gi|254780353|ref|YP_003064766.1| DNA topoisomerase IV subunit A [Candidatus Liberibacter asiaticus str. psy62] gi|254040030|gb|ACT56826.1| DNA topoisomerase IV subunit A [Candidatus Liberibacter asiaticus str. psy62] Length = 753 Score = 1537 bits (3980), Expect = 0.0, Method: Compositional matrix adjust. Identities = 753/753 (100%), Positives = 753/753 (100%) Query: 1 MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60 MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA Sbjct: 1 MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60 Query: 61 MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120 MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN Sbjct: 61 MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120 Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT Sbjct: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180 Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV Sbjct: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240 Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED Sbjct: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300 Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI Sbjct: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360 Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR 420 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR Sbjct: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR 420 Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR Sbjct: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480 Query: 481 EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL 540 EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL Sbjct: 481 EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL 540 Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQ 600 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQ Sbjct: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQ 600 Query: 601 DIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH 660 DIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH Sbjct: 601 DIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH 660 Query: 661 VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYN 720 VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYN Sbjct: 661 VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYN 720 Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753 RSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS Sbjct: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753 >gi|315122223|ref|YP_004062712.1| DNA topoisomerase IV subunit A [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495625|gb|ADR52224.1| DNA topoisomerase IV subunit A [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 753 Score = 1335 bits (3456), Expect = 0.0, Method: Compositional matrix adjust. Identities = 642/752 (85%), Positives = 695/752 (92%) Query: 1 MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60 MG D NS+ LVEEN +VSL+ ALEERYLAYALSTIKERAIPD RDGFKPVHRRIIHA Sbjct: 1 MGSDKTPNSDDLVEENFNSVSLKSALEERYLAYALSTIKERAIPDSRDGFKPVHRRIIHA 60 Query: 61 MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120 MSEMGLDF AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQ FVQRYPLI GQGNFGN Sbjct: 61 MSEMGLDFNAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQSFVQRYPLIRGQGNFGN 120 Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180 IDGDSAAAYRYTEARMTQVA+LILQGVDE+AVDFRDTYNEEDSEPVVFP KFPNLLANG+ Sbjct: 121 IDGDSAAAYRYTEARMTQVADLILQGVDENAVDFRDTYNEEDSEPVVFPGKFPNLLANGS 180 Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240 SGIAVGMATSIPSHNV+EICEAAL LI++PE S+EKLLE+IIGPDFPTGGIIVESRESI Sbjct: 181 SGIAVGMATSIPSHNVEEICEAALILINDPESSLEKLLEHIIGPDFPTGGIIVESRESIF 240 Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300 ESYR GRGGFRVRA+WCVE++GRGSWCIVV+EIPYQVQKSRLIEKIA+LI+ KRIPLLED Sbjct: 241 ESYRSGRGGFRVRAKWCVEDLGRGSWCIVVSEIPYQVQKSRLIEKIADLIMTKRIPLLED 300 Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360 IRDESAED+RIVLFPKNRS+DPDLLMES+F+LSD+ETRFPLNMNVLSMGRVPQVM LDG+ Sbjct: 301 IRDESAEDIRIVLFPKNRSVDPDLLMESMFVLSDLETRFPLNMNVLSMGRVPQVMSLDGV 360 Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR 420 LKEWL HRREVL RRSSFRMQAIDRRVE+LKGL IAYLNIDEIIAIIRNEDKPK VM+SR Sbjct: 361 LKEWLVHRREVLLRRSSFRMQAIDRRVEVLKGLSIAYLNIDEIIAIIRNEDKPKSVMISR 420 Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480 FSLTENQ DAILNLRLRSLRKLEEYQIKSELDNLL EK+ ++ LLNS K+QW+QIACEIR Sbjct: 421 FSLTENQADAILNLRLRSLRKLEEYQIKSELDNLLLEKDNLNLLLNSEKKQWDQIACEIR 480 Query: 481 EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL 540 EVKEIFSKSTDLGRRRT FCE + DK +QQAMIEKEP+TVVIS RGWIRSLK HS+DL Sbjct: 481 EVKEIFSKSTDLGRRRTVFCEALKTDKVAVQQAMIEKEPVTVVISKRGWIRSLKGHSIDL 540 Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQ 600 SAL+FKEGD LKIA HA+TT+RILL STDG+AYTLP GNLLSGRGHGEAIQLLID+NHNQ Sbjct: 541 SALNFKEGDGLKIAFHAYTTERILLFSTDGRAYTLPVGNLLSGRGHGEAIQLLIDINHNQ 600 Query: 601 DIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH 660 DI+ AFV D TCKLL VS+KGNAFIV+ES+II NTRKGK F KVSS + MKLVVKV GD+ Sbjct: 601 DIMAAFVQDPTCKLLFVSNKGNAFIVQESQIIPNTRKGKQFFKVSSGDSMKLVVKVIGDN 660 Query: 661 VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYN 720 VAVVGENRKLLIF IDQIPEM+RGKGVRLQSYKDGG+SDV+CF I EGLTW+DSAGRS+N Sbjct: 661 VAVVGENRKLLIFPIDQIPEMNRGKGVRLQSYKDGGVSDVVCFNISEGLTWVDSAGRSFN 720 Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752 RS++DL+ WLGKRGG GSLVPKGFPRSG F S Sbjct: 721 RSKDDLIRWLGKRGGAGSLVPKGFPRSGNFFS 752 >gi|116251375|ref|YP_767213.1| DNA topoisomerase IV subunit A [Rhizobium leguminosarum bv. viciae 3841] gi|115256023|emb|CAK07104.1| putative topoisomerase IV subunit [Rhizobium leguminosarum bv. viciae 3841] Length = 751 Score = 1043 bits (2696), Expect = 0.0, Method: Compositional matrix adjust. Identities = 481/737 (65%), Positives = 618/737 (83%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 +++++ V L+ ALE+RYLAYALSTI RA+PD+RDG KPVHRRI++AM+EMGL +AF+ Sbjct: 13 DDHIQPVDLKAALEQRYLAYALSTIMHRALPDVRDGLKPVHRRIVYAMNEMGLRPNSAFR 72 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 K A+IVGEV+G HPHGDQS+YD+L RLAQ F QRY L++GQGNFGNIDGDS AA RYTE Sbjct: 73 KCAKIVGEVMGNYHPHGDQSIYDALARLAQDFSQRYTLVNGQGNFGNIDGDSPAAMRYTE 132 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 ++MT V+EL+L+G+D+DAVDFRDTY+E +SEPVV P FPNLLANG+SGIAVGMATSIPS Sbjct: 133 SKMTAVSELLLEGIDQDAVDFRDTYDESNSEPVVLPGAFPNLLANGSSGIAVGMATSIPS 192 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN E+C+AAL LI +P+ ++EKL+E+I GPDFPTGGII+++RESI+ESYR GRGGFRVR Sbjct: 193 HNAHELCDAALHLIKHPDATVEKLVEFIPGPDFPTGGIIIDNRESIIESYRTGRGGFRVR 252 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313 A+W E++GRG + IV+TEIP+QVQKSRLIEKIAEL+IA+++PLLEDIRDESAED+R+VL Sbjct: 253 AKWQTEDLGRGGYQIVITEIPFQVQKSRLIEKIAELLIARKLPLLEDIRDESAEDIRVVL 312 Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373 PK RS+DP +LMES+F L+++E+RFPLNMNVLSMGR+P+VM L+ +LKEWL HRREVL Sbjct: 313 VPKTRSVDPTILMESMFKLTELESRFPLNMNVLSMGRIPRVMALNEVLKEWLDHRREVLQ 372 Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILN 433 RRS FR+ AIDRR+EIL GLL+AYLNIDE+I IIR ED+PKPVM++R+ LT+NQV+AILN Sbjct: 373 RRSRFRLAAIDRRLEILSGLLVAYLNIDEVIRIIREEDEPKPVMMARWDLTDNQVEAILN 432 Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493 +RLR+LRKLEE++I+ E D L EK +I++LL+S +QW +A EI EVK+ F+K+T++G Sbjct: 433 MRLRALRKLEEFEIRKEFDELTKEKGEIEALLSSDDKQWQTVAWEIGEVKKKFAKATEVG 492 Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKI 553 RRRT F + D+ +QQAMIEKEPITVVIS +GWIR+LK H D +AL FKEGD LKI Sbjct: 493 RRRTQFADAPETDEEAIQQAMIEKEPITVVISEKGWIRALKGHIADTAALTFKEGDGLKI 552 Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613 A A TTD+IL+++T GKA+TL L GRGHGE +++++D++++Q ++TAFV+D + K Sbjct: 553 AFPAQTTDKILIVTTGGKAFTLGGDKLPGGRGHGEPLRIIVDMDNDQAVLTAFVHDPSRK 612 Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIF 673 L+VS+ GN F+V E+E++ANTRKGK + V E+ +L+V V+GDHVAVVGENRKLL+F Sbjct: 613 QLIVSTAGNGFVVPEAELVANTRKGKQIMNVGLPEETQLLVPVSGDHVAVVGENRKLLVF 672 Query: 674 SIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKR 733 + Q+PEMSRGKGVRLQ YKDGGISDV CF I +GL W DSAGR++ +S+++L+ WL R Sbjct: 673 PLAQVPEMSRGKGVRLQRYKDGGISDVRCFAISDGLVWEDSAGRTFTKSKDELVEWLADR 732 Query: 734 GGVGSLVPKGFPRSGKF 750 G VPKGFPRSGKF Sbjct: 733 ATAGRTVPKGFPRSGKF 749 >gi|150396031|ref|YP_001326498.1| DNA topoisomerase IV subunit A [Sinorhizobium medicae WSM419] gi|150027546|gb|ABR59663.1| DNA topoisomerase IV, A subunit [Sinorhizobium medicae WSM419] Length = 758 Score = 1042 bits (2695), Expect = 0.0, Method: Compositional matrix adjust. Identities = 492/745 (66%), Positives = 611/745 (82%), Gaps = 8/745 (1%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 ++N++ V L+ ALEERYLAYALSTI RA+PD+RDG KPVHRRIIHAMSEMGL ++FK Sbjct: 12 DDNIQPVDLKAALEERYLAYALSTIMHRALPDVRDGLKPVHRRIIHAMSEMGLRPNSSFK 71 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 K ARIVG+VIGK HPHGDQSVYD+LVRLAQ F QRYP++ GQGNFGNIDGD+AAAYRYTE Sbjct: 72 KCARIVGDVIGKFHPHGDQSVYDALVRLAQDFSQRYPVVDGQGNFGNIDGDNAAAYRYTE 131 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 A+MT+VA L+L+G+D+DAVDFR TYNEED EP V P FPNLLANG SGIAVGMATSIP Sbjct: 132 AKMTEVAALLLEGIDQDAVDFRPTYNEEDQEPTVLPGAFPNLLANGASGIAVGMATSIPP 191 Query: 194 HNVQEICEAALALIDNPEISIEKLL--------EYIIGPDFPTGGIIVESRESIVESYRL 245 HN E+C+AAL LI +P+ +E LL I GPDFPTGG+IVESR S++ESYR Sbjct: 192 HNAHELCDAALYLIRHPDAPLEALLFDPANPQRGGIEGPDFPTGGVIVESRTSMMESYRT 251 Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305 GRGGFRVRARW VE++GRG + IVVTEIPYQVQKSRLIEKIAEL+IA+++PLLEDIRDES Sbjct: 252 GRGGFRVRARWTVEDLGRGGFQIVVTEIPYQVQKSRLIEKIAELLIARKLPLLEDIRDES 311 Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365 AEDVR+VL PK+RS+D ++LMES+F L+++E+R PLNMNVLSMGRVP+VM L+ +L EWL Sbjct: 312 AEDVRVVLVPKSRSVDANILMESLFKLTELESRIPLNMNVLSMGRVPRVMALNEVLSEWL 371 Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425 AHRREVL RRS R+ AIDRR+EIL G LIAYLNIDE+I IIR ED+PK VM+ RF LT+ Sbjct: 372 AHRREVLQRRSRHRLAAIDRRLEILGGYLIAYLNIDEVIRIIREEDEPKAVMIERFGLTD 431 Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485 Q +AILN+RLRSLRKLEE++I++E D L EK +I++LL S +QW +A EI EVK+ Sbjct: 432 VQAEAILNMRLRSLRKLEEFEIRTEFDALSKEKAEIEALLASDDKQWQAVAWEIGEVKKK 491 Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545 F+K+T+LG+RR+TF + AD +QQAMIEKEPITVVIS +GWIR+LK H D ++L F Sbjct: 492 FAKATELGKRRSTFADAPEADVEAIQQAMIEKEPITVVISEKGWIRALKGHIADTTSLQF 551 Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605 K+GD+LK++ A TTD+IL+ +T GK YTL + L GRGHGE +++++D+ ++QD++TA Sbjct: 552 KDGDALKVSFPAQTTDKILIFTTGGKVYTLGSDKLPGGRGHGEPLRIMVDMENDQDVLTA 611 Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVG 665 FV+D KL+V S+ GN F+V ES+I+ANTRKGK + VS ++ KLVV V GDH+AVVG Sbjct: 612 FVHDPARKLVVSSTAGNGFVVTESDIVANTRKGKQVMNVSMPDEAKLVVPVKGDHLAVVG 671 Query: 666 ENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSEND 725 ENRK+L+F + Q+PEM+RGKGVRLQ YKDGGISD+ CF I EGLTW DSAGR + +++++ Sbjct: 672 ENRKMLVFPLAQVPEMARGKGVRLQRYKDGGISDIRCFSIAEGLTWEDSAGRVFTKTKDE 731 Query: 726 LLGWLGKRGGVGSLVPKGFPRSGKF 750 LL W+G R G G +VPKGFPRSGKF Sbjct: 732 LLEWMGDRAGAGRVVPKGFPRSGKF 756 >gi|15964952|ref|NP_385305.1| DNA topoisomerase IV subunit A [Sinorhizobium meliloti 1021] gi|307301023|ref|ZP_07580792.1| DNA topoisomerase IV, A subunit [Sinorhizobium meliloti BL225C] gi|7387990|sp|Q59749|PARC_RHIME RecName: Full=DNA topoisomerase 4 subunit A; AltName: Full=Topoisomerase IV subunit A gi|15074131|emb|CAC45778.1| Probable topoisomerase IV subunit A [Sinorhizobium meliloti 1021] gi|306903978|gb|EFN34564.1| DNA topoisomerase IV, A subunit [Sinorhizobium meliloti BL225C] Length = 758 Score = 1041 bits (2693), Expect = 0.0, Method: Compositional matrix adjust. Identities = 491/745 (65%), Positives = 610/745 (81%), Gaps = 8/745 (1%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 ++N++ V L+ ALEERYLAYALSTI RA+PD+RDG KPVHRRIIHAMSEMGL ++FK Sbjct: 12 DDNIQPVDLKAALEERYLAYALSTIMHRALPDVRDGLKPVHRRIIHAMSEMGLRPNSSFK 71 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 K ARIVG+VIGK HPHGDQSVYD+LVRLAQ F QRYP++ GQGNFGNIDGD+AAAYRYTE Sbjct: 72 KCARIVGDVIGKFHPHGDQSVYDALVRLAQDFSQRYPVVDGQGNFGNIDGDNAAAYRYTE 131 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 A+MT+VA L+L+G+D+DAVDFR TYNEED EP V P FPNLLANG SGIAVGMATSIP Sbjct: 132 AKMTEVAALLLEGIDQDAVDFRPTYNEEDQEPTVLPGAFPNLLANGASGIAVGMATSIPP 191 Query: 194 HNVQEICEAALALIDNPEISIEKLL--------EYIIGPDFPTGGIIVESRESIVESYRL 245 HN E+C+AAL LI +P+ ++E LL I GPDFPTGG+IVESR S+ ESYR Sbjct: 192 HNAHELCDAALHLIKHPDATVEDLLFDPANPQRGGIEGPDFPTGGVIVESRASMAESYRT 251 Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305 GRGGFRVRARW VE++GRG + IVVTEIPYQVQKSRLIEKIAEL+IA+++PLLEDIRDES Sbjct: 252 GRGGFRVRARWAVEDLGRGGFQIVVTEIPYQVQKSRLIEKIAELLIARKLPLLEDIRDES 311 Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365 AEDVR+VL PK+RS+D ++LMES+F L+++E+R PLNMNVLSMGRVP+VM L+ +L EWL Sbjct: 312 AEDVRVVLVPKSRSVDANILMESLFKLTELESRIPLNMNVLSMGRVPRVMALNEVLSEWL 371 Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425 AHRREVL RRS R+ AIDRR+EIL G LIAYLNIDE+I IIR ED+PK VM+ RF LT+ Sbjct: 372 AHRREVLQRRSRHRLAAIDRRLEILGGYLIAYLNIDEVIRIIREEDEPKAVMIERFGLTD 431 Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485 Q +AILN+RLRSLRKLEE++I++E D+L EK +I++LL SG +QW +A EI EVK+ Sbjct: 432 VQAEAILNMRLRSLRKLEEFEIRTEFDSLSKEKAEIEALLASGDKQWQAVAWEIGEVKKK 491 Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545 F+K+T+LG+RR+TF + AD +QQAMIEKEPITVVIS +GWIR+LK H D S+L F Sbjct: 492 FAKATELGKRRSTFSDAPDADVEAIQQAMIEKEPITVVISEKGWIRALKGHIADTSSLQF 551 Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605 K+GD LK++ A TTD+IL+ +T GKAYTL L GRGHGE +++++D+ ++QD++TA Sbjct: 552 KDGDGLKVSFPAQTTDKILIFTTGGKAYTLGGDKLPGGRGHGEPLRIMVDMENDQDVLTA 611 Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVG 665 FV+D KL+V S+ GN F+V ES+I+ANTRKGK + V+ ++ KLVV V GDH+AVVG Sbjct: 612 FVHDPARKLIVSSTAGNGFVVTESDIVANTRKGKQVMNVTMPDEAKLVVPVKGDHLAVVG 671 Query: 666 ENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSEND 725 ENRK+L+F + Q+PEM+RGKGVRLQ YKDGG+SD+ F I EGLTW DSAGR + ++ ++ Sbjct: 672 ENRKMLVFPLVQVPEMARGKGVRLQRYKDGGVSDIRSFAIAEGLTWEDSAGRVFTKTRDE 731 Query: 726 LLGWLGKRGGVGSLVPKGFPRSGKF 750 L+ W+G R G G +VPKGFPRSGKF Sbjct: 732 LIEWMGDRAGAGRVVPKGFPRSGKF 756 >gi|307317757|ref|ZP_07597195.1| DNA topoisomerase IV, A subunit [Sinorhizobium meliloti AK83] gi|306896519|gb|EFN27267.1| DNA topoisomerase IV, A subunit [Sinorhizobium meliloti AK83] Length = 758 Score = 1041 bits (2692), Expect = 0.0, Method: Compositional matrix adjust. Identities = 491/745 (65%), Positives = 610/745 (81%), Gaps = 8/745 (1%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 ++N++ V L+ ALEERYLAYALSTI RA+PD+RDG KPVHRRIIHAMSEMGL ++FK Sbjct: 12 DDNIQPVDLKAALEERYLAYALSTIMHRALPDVRDGLKPVHRRIIHAMSEMGLRPNSSFK 71 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 K ARIVG+VIGK HPHGDQSVYD+LVRLAQ F QRYP++ GQGNFGNIDGD+AAAYRYTE Sbjct: 72 KCARIVGDVIGKFHPHGDQSVYDALVRLAQDFSQRYPVVDGQGNFGNIDGDNAAAYRYTE 131 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 A+MT+VA L+L+G+D+DAVDFR TYNEED EP V P FPNLLANG SGIAVGMATSIP Sbjct: 132 AKMTEVAALLLEGIDQDAVDFRPTYNEEDQEPTVLPGAFPNLLANGASGIAVGMATSIPP 191 Query: 194 HNVQEICEAALALIDNPEISIEKLL--------EYIIGPDFPTGGIIVESRESIVESYRL 245 HN E+C+AAL LI +P+ ++E LL I GPDFPTGG+IVESR S+ ESYR Sbjct: 192 HNAHELCDAALHLIKHPDATVEDLLFDPANPRRGGIEGPDFPTGGVIVESRASMAESYRT 251 Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305 GRGGFRVRARW VE++GRG + IVVTEIPYQVQKSRLIEKIAEL+IA+++PLLEDIRDES Sbjct: 252 GRGGFRVRARWAVEDLGRGGFQIVVTEIPYQVQKSRLIEKIAELLIARKLPLLEDIRDES 311 Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365 AEDVR+VL PK+RS+D ++LMES+F L+++E+R PLNMNVLSMGRVP+VM L+ +L EWL Sbjct: 312 AEDVRVVLVPKSRSVDANILMESLFKLTELESRIPLNMNVLSMGRVPRVMALNEVLSEWL 371 Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425 AHRREVL RRS R+ AIDRR+EIL G LIAYLNIDE+I IIR ED+PK VM+ RF LT+ Sbjct: 372 AHRREVLQRRSRHRLAAIDRRLEILGGYLIAYLNIDEVIRIIREEDEPKAVMIERFGLTD 431 Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485 Q +AILN+RLRSLRKLEE++I++E D+L EK +I++LL SG +QW +A EI EVK+ Sbjct: 432 VQAEAILNMRLRSLRKLEEFEIRTEFDSLSKEKAEIEALLASGDKQWQAVAWEIGEVKKK 491 Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545 F+K+T+LG+RR+TF + AD +QQAMIEKEPITVVIS +GWIR+LK H D S+L F Sbjct: 492 FAKATELGKRRSTFSDAPDADVEAIQQAMIEKEPITVVISEKGWIRALKGHIADTSSLQF 551 Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605 K+GD LK++ A TTD+IL+ +T GKAYTL L GRGHGE +++++D+ ++QD++TA Sbjct: 552 KDGDGLKVSFPAQTTDKILIFTTGGKAYTLGGDKLPGGRGHGEPLRIMVDMENDQDVLTA 611 Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVG 665 FV+D KL+V S+ GN F+V ES+I+ANTRKGK + V+ ++ KLVV V GDH+AVVG Sbjct: 612 FVHDPARKLIVSSTAGNGFVVTESDIVANTRKGKQVMNVTMPDEAKLVVPVKGDHLAVVG 671 Query: 666 ENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSEND 725 ENRK+L+F + Q+PEM+RGKGVRLQ YKDGG+SD+ F I EGLTW DSAGR + ++ ++ Sbjct: 672 ENRKMLVFPLVQVPEMARGKGVRLQRYKDGGVSDIRSFAIAEGLTWEDSAGRVFTKTRDE 731 Query: 726 LLGWLGKRGGVGSLVPKGFPRSGKF 750 L+ W+G R G G +VPKGFPRSGKF Sbjct: 732 LIEWMGDRAGAGRVVPKGFPRSGKF 756 >gi|227821521|ref|YP_002825491.1| DNA topoisomerase IV subunit A [Sinorhizobium fredii NGR234] gi|227340520|gb|ACP24738.1| DNA topoisomerase IV subunit A [Sinorhizobium fredii NGR234] Length = 753 Score = 1035 bits (2676), Expect = 0.0, Method: Compositional matrix adjust. Identities = 491/745 (65%), Positives = 608/745 (81%), Gaps = 8/745 (1%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 ++N++ V L+ ALEERYLAYALSTI RA+PD+RDG KPVHRRIIHAMSEMGL ++FK Sbjct: 7 DDNIQPVDLKAALEERYLAYALSTIMHRALPDVRDGLKPVHRRIIHAMSEMGLRPNSSFK 66 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 K ARIVG+VIGK HPHGDQSVYD+LVRLAQ F QRYP++ GQGNFGNIDGD+AAAYRYTE Sbjct: 67 KCARIVGDVIGKFHPHGDQSVYDALVRLAQDFSQRYPVVDGQGNFGNIDGDNAAAYRYTE 126 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 A+MT+VA L+L+G+D+DAVDFR TYNEED EP V P FPNLLANG SGIAVGMATSIP Sbjct: 127 AKMTEVAALLLEGIDQDAVDFRPTYNEEDEEPGVLPGAFPNLLANGASGIAVGMATSIPP 186 Query: 194 HNVQEICEAALALIDNPEISIEKLL--------EYIIGPDFPTGGIIVESRESIVESYRL 245 HN E+C+AAL LI +P+ +E LL I GPDFPTGGIIVESR S++ESYR Sbjct: 187 HNAHELCDAALHLIRHPKAPLEDLLFDPANPQRGGIEGPDFPTGGIIVESRASMLESYRT 246 Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305 GRGGFRVRARW VE++GRG + IVVTEIPYQVQKSRLIEKIAEL+IA+++PLLEDIRDES Sbjct: 247 GRGGFRVRARWSVEDLGRGGYQIVVTEIPYQVQKSRLIEKIAELLIARKLPLLEDIRDES 306 Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365 AEDVR+VL PK+RS+D ++LMES+F L+++E+R PLNMNVLSMGRVP+VM L+ +L EWL Sbjct: 307 AEDVRVVLVPKSRSVDANILMESLFKLTELESRIPLNMNVLSMGRVPRVMALNEVLSEWL 366 Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425 AHRREVL RRS R+ AIDRR+EIL G L+AYLNIDE+I IIR ED+PK +M+ RF+LT+ Sbjct: 367 AHRREVLQRRSRHRLAAIDRRLEILGGYLVAYLNIDEVIRIIREEDEPKAMMIERFALTD 426 Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485 Q +AILN+RLRSLRKLEE++I++E D L EK +I++LL S +QW +A EI EVK+ Sbjct: 427 VQAEAILNMRLRSLRKLEEFEIRTEFDALSKEKAEIEALLASDDKQWQAVAWEIGEVKKK 486 Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545 F+K+T+LG+RR+TF + AD +QQAMIEKEPITVVIS +GWIR+LK H D SAL F Sbjct: 487 FAKATELGKRRSTFADAPDADIEAIQQAMIEKEPITVVISEKGWIRALKGHISDTSALQF 546 Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605 K+GD+LK+A A TTD+IL+ +T GK YTL L GRGHGE +++++D+ ++QD++TA Sbjct: 547 KDGDALKVAFPAQTTDKILVFTTGGKVYTLGGDKLPGGRGHGEPLRIMVDMENDQDVLTA 606 Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVG 665 V+D KL+V S+ GN F+V ES+I+ANTRKGK + V ++ KLVV GDHVAVVG Sbjct: 607 LVHDPARKLIVSSAAGNGFVVTESDIVANTRKGKQVMNVVMPDEAKLVVPTKGDHVAVVG 666 Query: 666 ENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSEND 725 +NRK+L+F + QIPEM+RGKGVRLQ YKDGGISD+ CF + EGLTW DSAGR + +++++ Sbjct: 667 DNRKMLVFPLAQIPEMARGKGVRLQRYKDGGISDIRCFTMAEGLTWEDSAGRVFTKTKDE 726 Query: 726 LLGWLGKRGGVGSLVPKGFPRSGKF 750 L+ WLG R G G LVPKGFPRSG+F Sbjct: 727 LVEWLGDRAGAGRLVPKGFPRSGRF 751 >gi|222148193|ref|YP_002549150.1| DNA topoisomerase IV subunit A [Agrobacterium vitis S4] gi|221735181|gb|ACM36144.1| DNA topoisomerase IV A subunit [Agrobacterium vitis S4] Length = 758 Score = 1031 bits (2666), Expect = 0.0, Method: Compositional matrix adjust. Identities = 489/744 (65%), Positives = 603/744 (81%), Gaps = 8/744 (1%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 +NV + L++ALEERYLAYALSTI RA+PD+RDG KPVHRRIIHAMSEMG+ +AFKK Sbjct: 13 DNVTPIDLKYALEERYLAYALSTIMHRALPDVRDGLKPVHRRIIHAMSEMGIRPNSAFKK 72 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 ARIVG+VIGK HPHGDQSVYD+LVRLAQ F QRYP++ GQGNFGNIDGDSAAAYRYTEA Sbjct: 73 CARIVGDVIGKFHPHGDQSVYDALVRLAQDFSQRYPVVDGQGNFGNIDGDSAAAYRYTEA 132 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 RMT VA L+L+G+++DAVDFR TYNEED EPVV P FPNLLANG SGIAVGMATSIP H Sbjct: 133 RMTDVAGLLLEGIEQDAVDFRPTYNEEDDEPVVLPGAFPNLLANGASGIAVGMATSIPPH 192 Query: 195 NVQEICEAALALIDNPEISIEKLLE--------YIIGPDFPTGGIIVESRESIVESYRLG 246 N E+C+AAL LI N S+E+L I GPDFPTGGI++ESRES++E+YR G Sbjct: 193 NAHELCDAALYLIKNRSASVEELFADPAHPQRGGIEGPDFPTGGIVIESRESMLETYRTG 252 Query: 247 RGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA 306 RGGFRVRA+W E++GRG + IV+T+IP+QVQKSRLIEKIAEL+IAKR+PLLEDIRDESA Sbjct: 253 RGGFRVRAKWETEDLGRGGYQIVITQIPFQVQKSRLIEKIAELLIAKRLPLLEDIRDESA 312 Query: 307 EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366 EDVR+VL PK+R++DP +LMES+F LS++E+R PLNMNVLS G+VP+VM L+ +L EWL Sbjct: 313 EDVRVVLVPKSRTVDPTILMESLFKLSELESRIPLNMNVLSQGKVPKVMALNEVLLEWLD 372 Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426 HR++VL RRS FR+ AIDRR+EIL GLLIAYLN+DE+I IIR ED+ K +++RF LT+N Sbjct: 373 HRKDVLVRRSRFRLAAIDRRLEILGGLLIAYLNLDEVIRIIREEDEAKDALIARFELTDN 432 Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486 Q +AILN+RLR+LRKLEE++I+ E D L EK +I++LL S QW IA EI EVK+ + Sbjct: 433 QAEAILNMRLRNLRKLEEFEIRKEHDALSKEKAEIETLLASDDLQWGTIASEIGEVKKKY 492 Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546 +K+TD+GRRRT F AD +QQAMIEKEPITVVIS +GWIR+LK HS D +L FK Sbjct: 493 AKATDIGRRRTLFANAPDADVDAIQQAMIEKEPITVVISEKGWIRALKGHSYDKVSLTFK 552 Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606 EGD L++A A TTD+ILL++T GK YTL L GRGHGE I++++D+ ++QD++TAF Sbjct: 553 EGDGLRVAFPAQTTDKILLVTTGGKVYTLGGDKLPGGRGHGEPIRIMVDMENDQDVLTAF 612 Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGE 666 V+D KLL+ S+ GN FIV ES+I ANTRKGK + V ++ KLVV ++GDHVAVVGE Sbjct: 613 VHDPARKLLIASTGGNGFIVAESDITANTRKGKQVMNVGMPDETKLVVPISGDHVAVVGE 672 Query: 667 NRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDL 726 NRK+++F + Q+PEMSRGKGVRLQ YKDGG+SD+ CF + +GL+W DSAGRS+ RS+++L Sbjct: 673 NRKMVVFPLAQVPEMSRGKGVRLQRYKDGGVSDIKCFTLADGLSWEDSAGRSFTRSKDEL 732 Query: 727 LGWLGKRGGVGSLVPKGFPRSGKF 750 L WLG R G G VPKGFPRSGKF Sbjct: 733 LEWLGDRAGPGRTVPKGFPRSGKF 756 >gi|190891181|ref|YP_001977723.1| DNA topoisomerase IV protein, subunit A [Rhizobium etli CIAT 652] gi|190696460|gb|ACE90545.1| DNA topoisomerase IV protein, subunit A [Rhizobium etli CIAT 652] Length = 751 Score = 1026 bits (2653), Expect = 0.0, Method: Compositional matrix adjust. Identities = 480/737 (65%), Positives = 618/737 (83%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 ++N++ V L+ ALE+RYLAYALSTI RA+PD+RDG KPVHRRI++AM+EMGL +AF+ Sbjct: 13 DDNIQPVDLKAALEQRYLAYALSTIMHRALPDVRDGLKPVHRRIVYAMNEMGLRPTSAFR 72 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 K A+IVGEV+G HPHGDQS+YD+L RLAQ F QRY L++GQGNFGNIDGDS AA RYTE Sbjct: 73 KCAKIVGEVMGNYHPHGDQSIYDALARLAQDFSQRYTLVNGQGNFGNIDGDSPAAMRYTE 132 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 ++MT V+EL+L+G+D+DAVDFRDTY+E +SEP+V P FPNLLANG+SGIAVGMATSIPS Sbjct: 133 SKMTAVSELLLEGIDQDAVDFRDTYDESNSEPIVLPGAFPNLLANGSSGIAVGMATSIPS 192 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN E+C+AAL LI +P+ ++EKL+E+I GPDFPTGGII++SR+SI+ESYR GRGGFRVR Sbjct: 193 HNAHELCDAALHLIKHPDATVEKLVEFIPGPDFPTGGIIIDSRDSIIESYRTGRGGFRVR 252 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313 A+W E++GRG + IVVTEIP+QVQKSRLIEKIAEL+IA+++PLLEDIRDESAED+RIVL Sbjct: 253 AKWQTEDLGRGGYQIVVTEIPFQVQKSRLIEKIAELLIARKLPLLEDIRDESAEDIRIVL 312 Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373 PK+R++DP +LMES+F L+++E+RFPLNMNVLSMGR+P+VM L+ +LKEWL HRREVL Sbjct: 313 VPKSRTVDPTILMESMFKLTELESRFPLNMNVLSMGRIPKVMALNEVLKEWLDHRREVLQ 372 Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILN 433 RRS FR+ AID+R+EIL GLLIAYLNIDE+I IIR ED+PKPVM++R+ LT+NQV+AILN Sbjct: 373 RRSRFRLAAIDKRLEILGGLLIAYLNIDEVIRIIREEDEPKPVMMARWDLTDNQVEAILN 432 Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493 +RLR+LRKLEE++I+ E D L EK +I++LL S +QW +A EI EVK+ F+K+T++G Sbjct: 433 MRLRALRKLEEFEIRKEFDELTKEKGEIEALLASDDKQWQTVAWEIGEVKKKFAKATEVG 492 Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKI 553 RRRT F + AD+ +QQAMIEKEPITVVIS +GWIR+LK H D + L FKEGD LK+ Sbjct: 493 RRRTQFADAPEADEEAIQQAMIEKEPITVVISEKGWIRALKGHIADTATLTFKEGDGLKV 552 Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613 A A TTD+IL+++T GKA+TL L GRGHGE +++++D++++Q ++TAFV+D K Sbjct: 553 AFPAQTTDKILIVTTGGKAFTLGGDKLPGGRGHGEPLRIMVDMDNDQAVLTAFVHDPARK 612 Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIF 673 L+VS+ GN F+V E+E+IANTRKGK + V+ E+ +L+V V+GDHVAVVGENRKLL+F Sbjct: 613 QLIVSTAGNGFVVAEAELIANTRKGKQIMNVALPEETQLLVPVSGDHVAVVGENRKLLVF 672 Query: 674 SIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKR 733 + Q+PEM+RGKGVRLQ YKDGGISDV CF + +GL W DSAGR++ +++++L WLG R Sbjct: 673 PLAQVPEMTRGKGVRLQRYKDGGISDVRCFAMSDGLVWEDSAGRTFTKNKDELAEWLGDR 732 Query: 734 GGVGSLVPKGFPRSGKF 750 G VPKGFPRSGKF Sbjct: 733 ASAGRTVPKGFPRSGKF 749 >gi|327192117|gb|EGE59094.1| DNA topoisomerase IV protein, subunit A [Rhizobium etli CNPAF512] Length = 751 Score = 1026 bits (2653), Expect = 0.0, Method: Compositional matrix adjust. Identities = 479/737 (64%), Positives = 618/737 (83%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 ++N++ V L+ ALE+RYLAYALSTI RA+PD+RDG KPVHRRI++AM+EMGL +AF+ Sbjct: 13 DDNIQPVDLKAALEQRYLAYALSTIMHRALPDVRDGLKPVHRRIVYAMNEMGLRPTSAFR 72 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 K A+IVGEV+G HPHGDQS+YD+L RLAQ F QRY L++GQGNFGNIDGDS AA RYTE Sbjct: 73 KCAKIVGEVMGNYHPHGDQSIYDALARLAQDFSQRYTLVNGQGNFGNIDGDSPAAMRYTE 132 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 ++MT V+EL+L+G+D+DAVDFRDTY+E +SEP+V P FPNLLANG+SGIAVGMATSIPS Sbjct: 133 SKMTAVSELLLEGIDQDAVDFRDTYDESNSEPIVLPGAFPNLLANGSSGIAVGMATSIPS 192 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN E+C+AAL LI +P+ ++EKL+E+I GPDFPTGGII++SR+SI+ESYR GRGGFRVR Sbjct: 193 HNAHELCDAALHLIKHPDATVEKLVEFIPGPDFPTGGIIIDSRDSIIESYRTGRGGFRVR 252 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313 A+W E++GRG + IVVTEIP+QVQKSRLIEKIAEL+IA+++PLLEDIRDESAED+RIVL Sbjct: 253 AKWQTEDLGRGGYQIVVTEIPFQVQKSRLIEKIAELLIARKLPLLEDIRDESAEDIRIVL 312 Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373 PK+R++DP +LMES+F L+++E+RFPLNMNVLSMGR+P+VM L+ +LKEWL HRREVL Sbjct: 313 VPKSRTVDPTILMESMFKLTELESRFPLNMNVLSMGRIPKVMALNEVLKEWLDHRREVLQ 372 Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILN 433 RRS FR+ AID+R+EIL GLL+AYLNIDE+I IIR ED+PKPVM++R+ LT+NQV+AILN Sbjct: 373 RRSRFRLAAIDKRLEILGGLLVAYLNIDEVIRIIREEDEPKPVMMARWDLTDNQVEAILN 432 Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493 +RLR+LRKLEE++I+ E D L EK +I++LL S +QW +A EI EVK+ F+K+T++G Sbjct: 433 MRLRALRKLEEFEIRKEFDELTKEKGEIEALLASDDKQWQTVAWEIGEVKKKFAKATEVG 492 Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKI 553 RRRT F + AD+ +QQAMIEKEPITVVIS +GWIR+LK H D + L FKEGD LK+ Sbjct: 493 RRRTQFADAPEADEEAIQQAMIEKEPITVVISEKGWIRALKGHIADTATLTFKEGDGLKV 552 Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613 A A TTD+IL+++T GKA+TL L GRGHGE +++++D++++Q ++TAFV+D K Sbjct: 553 AFPAQTTDKILIVTTGGKAFTLGGDKLPGGRGHGEPLRIMVDMDNDQAVLTAFVHDPARK 612 Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIF 673 L+VS+ GN F+V E+E+IANTRKGK + V+ E+ +L+V V+GDHVAVVGENRKLL+F Sbjct: 613 QLIVSTAGNGFVVAEAELIANTRKGKQIMNVALPEETQLLVPVSGDHVAVVGENRKLLVF 672 Query: 674 SIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKR 733 + Q+PEM+RGKGVRLQ YKDGGISDV CF + +GL W DSAGR++ +++++L WLG R Sbjct: 673 PLAQVPEMTRGKGVRLQRYKDGGISDVRCFAMSDGLVWEDSAGRTFTKNKDELAEWLGDR 732 Query: 734 GGVGSLVPKGFPRSGKF 750 G VPKGFPRSGKF Sbjct: 733 ASAGRTVPKGFPRSGKF 749 >gi|15888496|ref|NP_354177.1| DNA topoisomerase IV subunit A [Agrobacterium tumefaciens str. C58] gi|15156198|gb|AAK86962.1| topoisomerase IV subunit A [Agrobacterium tumefaciens str. C58] Length = 750 Score = 1025 bits (2651), Expect = 0.0, Method: Compositional matrix adjust. Identities = 495/750 (66%), Positives = 612/750 (81%), Gaps = 2/750 (0%) Query: 1 MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60 MG D + S ++N+ V L+ ALEERYLAYALSTI RA+PD+RDG KPVHRRIIHA Sbjct: 1 MGKDLVPPSGG--DDNIHPVDLKAALEERYLAYALSTIMHRALPDVRDGLKPVHRRIIHA 58 Query: 61 MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120 MSEMG+ +AFKK ARIVG+VIGK HPHGDQSVYD+LVRLAQ F QRYP++ GQGNFGN Sbjct: 59 MSEMGIRPNSAFKKCARIVGDVIGKFHPHGDQSVYDALVRLAQDFSQRYPIVDGQGNFGN 118 Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180 IDGD AAAYRYTEARMT VA L+L+G+ EDAVDFR TYNEED EPVV P FPNLLANG Sbjct: 119 IDGDGAAAYRYTEARMTDVAALLLEGIGEDAVDFRATYNEEDEEPVVLPGAFPNLLANGA 178 Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240 SGIAVGMATSIP HN E+C+AAL LI +P+ ++EKL+E+I GPD PTGG+I+ESRE+I+ Sbjct: 179 SGIAVGMATSIPPHNAHELCDAALHLIKHPDATVEKLVEFIPGPDLPTGGVIIESRENIL 238 Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300 ++Y+ GRGGFRVRA+W E++GRG + IV+TEIP+QVQKSRLIEKIAEL+IA+++PLLED Sbjct: 239 DAYKTGRGGFRVRAKWETEDLGRGGYQIVITEIPFQVQKSRLIEKIAELLIARKLPLLED 298 Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360 +RDESAEDVRIVL PKNR++D LLMES+F LSD+E+R PLNMNVLS+G+VP+VM L+ + Sbjct: 299 VRDESAEDVRIVLVPKNRTVDATLLMESLFRLSDLESRLPLNMNVLSLGKVPKVMALNEV 358 Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR 420 L EWLAHR++VL RRS R+ AIDRR+EIL GLLIAYLN+DE+I IIR ED+PK VM++R Sbjct: 359 LSEWLAHRKDVLVRRSRHRLAAIDRRLEILGGLLIAYLNLDEVIRIIREEDEPKQVMMAR 418 Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480 +SLT+NQ +AILN+RLR+LRKLEE++I+ E D+L EK +I+ LL S +QW +A EI Sbjct: 419 WSLTDNQAEAILNMRLRNLRKLEEFEIRKEHDDLSKEKSEIEGLLASDDKQWQTVAWEIG 478 Query: 481 EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL 540 EVK+ ++K+T++GRRRT F + AD +QQAMIEKEP+T+VIS +GWIR+LK H D Sbjct: 479 EVKKKYAKATEIGRRRTQFADAPDADIEAIQQAMIEKEPVTIVISQKGWIRALKGHMSDT 538 Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQ 600 SAL FKEGD K+A A TTD++LLL+T GKAYTL A L GRGHGE I++++D+ ++Q Sbjct: 539 SALTFKEGDGPKLAFPAQTTDKLLLLTTGGKAYTLGADKLPGGRGHGEPIRIMVDMENDQ 598 Query: 601 DIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH 660 DI+TAFV+D + KLL+VS+ GN FIV ESE+IANTRKGK + VS ++ KL V VTGDH Sbjct: 599 DILTAFVHDPSRKLLLVSTGGNGFIVAESEMIANTRKGKQIMNVSMPDEAKLAVPVTGDH 658 Query: 661 VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYN 720 VAVVGENRKLL F + Q+PEMSRGKGVRLQ YKDGG+ DV CF + +GL+W D+AGR++ Sbjct: 659 VAVVGENRKLLAFPLSQVPEMSRGKGVRLQRYKDGGVVDVKCFALADGLSWSDTAGRAFT 718 Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750 + +L WL R VG VPKGFPRSGKF Sbjct: 719 KVGEELREWLADRATVGRTVPKGFPRSGKF 748 >gi|241203990|ref|YP_002975086.1| DNA topoisomerase IV subunit A [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240857880|gb|ACS55547.1| DNA topoisomerase IV, A subunit [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 751 Score = 1025 bits (2649), Expect = 0.0, Method: Compositional matrix adjust. Identities = 480/737 (65%), Positives = 616/737 (83%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 +++++ V L+ ALE+RYLAYALSTI RA+PD+RDG KPVHRRI++AM+EMGL +AF+ Sbjct: 13 DDHIQPVDLKAALEQRYLAYALSTIMHRALPDVRDGLKPVHRRIVYAMNEMGLRPNSAFR 72 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 K A+IVGEV+G HPHGDQS+YD+L RLAQ F QRY L++GQGNFGNIDGDS AA RYTE Sbjct: 73 KCAKIVGEVMGNYHPHGDQSIYDALARLAQDFSQRYTLVNGQGNFGNIDGDSPAAMRYTE 132 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 ++MT V+EL+L+G+D+DAVDFRDTY+E +SEPVV P FPNLLANG+SGIAVGMATSIPS Sbjct: 133 SKMTAVSELLLEGIDQDAVDFRDTYDESNSEPVVLPGAFPNLLANGSSGIAVGMATSIPS 192 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN E+C+AAL LI +P+ ++EKL+E+I GPDFPTGGII++SR+SI+ESYR GRGGFRVR Sbjct: 193 HNAHELCDAALHLIKHPDATVEKLVEFIPGPDFPTGGIIIDSRDSIIESYRTGRGGFRVR 252 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313 A+W E++GRG + IV+TEIP+QVQKSRLIEKIAEL+IA+++PLLEDIRDESAED+R+VL Sbjct: 253 AKWQTEDLGRGGYQIVITEIPFQVQKSRLIEKIAELLIARKLPLLEDIRDESAEDIRVVL 312 Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373 PK RS+DP +LMES+F L+++E+RFPLNMNVLSMGR+P+VM L+ +LKEWL HRREVL Sbjct: 313 VPKTRSVDPTILMESMFKLTELESRFPLNMNVLSMGRIPRVMALNEVLKEWLDHRREVLQ 372 Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILN 433 RRS FR+ AIDRR+EIL GLL+AYLNIDE+I IIR ED+PKPVM++R+ LT+NQV+AILN Sbjct: 373 RRSRFRLAAIDRRLEILSGLLVAYLNIDEVIRIIREEDEPKPVMMARWDLTDNQVEAILN 432 Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493 +RLR+LRKLEE++I+ E D L EK +I++LL+S +QW +A EI EVK+ F+K+T++G Sbjct: 433 MRLRALRKLEEFEIRKEFDELTKEKGEIETLLSSDDKQWQTVAWEIGEVKKKFAKATEIG 492 Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKI 553 RRRT F + D+ +QQAMIEKEPITVVIS +GWIR+LK H D + L FKEGD LKI Sbjct: 493 RRRTQFADAPETDEEAIQQAMIEKEPITVVISEKGWIRALKGHIADTATLTFKEGDGLKI 552 Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613 A A TTD+IL+L+T GKA+TL L GRGHGE +++++D++++Q ++TAFV+D + K Sbjct: 553 AFPAQTTDKILILTTGGKAFTLGGDKLPGGRGHGEPLRIIVDMDNDQAVLTAFVHDPSRK 612 Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIF 673 L+VS+ GN F+V E+E++ANTRKGK + V E+ +L+V V+GDHVAVVGENRKLL+F Sbjct: 613 QLIVSTAGNGFVVPEAELVANTRKGKQIMNVGLPEETQLLVPVSGDHVAVVGENRKLLVF 672 Query: 674 SIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKR 733 + Q+PEMSRGKGVRLQ YKDGGISDV CF I +GL W DSAGR++ +++++L WL R Sbjct: 673 PLAQVPEMSRGKGVRLQRYKDGGISDVRCFAISDGLVWEDSAGRTFTKNKDELAEWLADR 732 Query: 734 GGVGSLVPKGFPRSGKF 750 G VPKGFPRSGKF Sbjct: 733 ATAGRTVPKGFPRSGKF 749 >gi|86357137|ref|YP_469029.1| DNA topoisomerase IV subunit A [Rhizobium etli CFN 42] gi|86281239|gb|ABC90302.1| DNA topoisomerase IV subunit A protein [Rhizobium etli CFN 42] Length = 751 Score = 1018 bits (2631), Expect = 0.0, Method: Compositional matrix adjust. Identities = 482/737 (65%), Positives = 619/737 (83%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 ++N++ V L+ ALE+RYLAYALSTI RA+PD+RDG KPVHRRI++AM+EMGL +AF+ Sbjct: 13 DDNIQPVDLKAALEQRYLAYALSTIMHRALPDVRDGLKPVHRRIVYAMNEMGLRPTSAFR 72 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 K A+IVGEV+G HPHGDQS+YD+L RLAQ F QRY L++GQGNFGNIDGDS AA RYTE Sbjct: 73 KCAKIVGEVMGNYHPHGDQSIYDALARLAQDFSQRYTLVNGQGNFGNIDGDSPAAMRYTE 132 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 ++MT V+EL+L+G+D+DAVDFRDTY+E +SEPVV P FPNLLANG+SGIAVGMATSIPS Sbjct: 133 SKMTAVSELLLEGIDQDAVDFRDTYDESNSEPVVLPGAFPNLLANGSSGIAVGMATSIPS 192 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN E+C+AAL LI +P+ ++EKL+E+I GPDFPTGGII++SR+SI+ESYR GRGGFRVR Sbjct: 193 HNAHELCDAALHLIKHPDATVEKLVEFIPGPDFPTGGIIIDSRDSIIESYRTGRGGFRVR 252 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313 A+W E++GRG + I++TEIP+QVQKSRLIEKIAEL+IA+++PLLEDIRDESAED+RIVL Sbjct: 253 AKWQTEDLGRGGYQIIITEIPFQVQKSRLIEKIAELLIARKLPLLEDIRDESAEDIRIVL 312 Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373 PK+RS+DP +LMES+F L+++E+RFPLNMNVLSMGR+P+VM L+ +LKEWL HRREVL Sbjct: 313 VPKSRSVDPTILMESMFKLTELESRFPLNMNVLSMGRIPKVMALNEVLKEWLDHRREVLQ 372 Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILN 433 RRS FR+ AID+R+EIL GLLIAYLNIDE+I IIR ED+PKPVM++R+ LT+NQV+AILN Sbjct: 373 RRSRFRLAAIDKRLEILGGLLIAYLNIDEVIRIIREEDEPKPVMMARWDLTDNQVEAILN 432 Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493 +RLR+LRKLEE++I+ E D L EK +I++LL S +QW +A EI EVK+ F+K+T++G Sbjct: 433 MRLRALRKLEEFEIRKEFDELTKEKSEIEALLASDDKQWQTVAWEIGEVKKKFAKATEVG 492 Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKI 553 RRRT F E AD+ +QQAMIEKEPITVVIS +GWIR+LK H + + L FKEGD LK+ Sbjct: 493 RRRTQFAEAPEADEEAIQQAMIEKEPITVVISEKGWIRALKGHISETATLTFKEGDGLKV 552 Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613 A A TTD+IL+++T GKA+TL L GRGHGE +++++D++++Q ++TAFV+D T K Sbjct: 553 AFPAQTTDKILIVTTGGKAFTLGGDKLPGGRGHGEPLRIMVDMDNDQAVLTAFVHDPTRK 612 Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIF 673 L+VS+ GN F+V E+E++ANTRKGK + V+ E+ +L+V V+GDHVAVVGENRKLL+F Sbjct: 613 QLIVSTAGNGFVVPEAELVANTRKGKQIMNVALPEETQLLVPVSGDHVAVVGENRKLLVF 672 Query: 674 SIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKR 733 + Q+PEMSRGKGVRLQ YKDGGISDV CF I +GL W DSAGR++ +++++L WLG R Sbjct: 673 PLAQVPEMSRGKGVRLQRYKDGGISDVRCFAISDGLFWEDSAGRTFTKNKDELAEWLGDR 732 Query: 734 GGVGSLVPKGFPRSGKF 750 G VPKGFPRSGKF Sbjct: 733 ASAGRTVPKGFPRSGKF 749 >gi|209548711|ref|YP_002280628.1| DNA topoisomerase IV subunit A [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209534467|gb|ACI54402.1| DNA topoisomerase IV, A subunit [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 751 Score = 1016 bits (2628), Expect = 0.0, Method: Compositional matrix adjust. Identities = 479/737 (64%), Positives = 613/737 (83%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 ++ ++ V L+ ALE+RYLAYALSTI RA+PD+RDG KPVHRRI++AM+EMGL +AF+ Sbjct: 13 DDYIQPVDLKAALEQRYLAYALSTIMHRALPDVRDGLKPVHRRIVYAMNEMGLRPTSAFR 72 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 K A+IVGEV+G HPHGDQS+YD+L RLAQ F QRY L++GQGNFGNIDGDS AA RYTE Sbjct: 73 KCAKIVGEVMGNYHPHGDQSIYDALARLAQDFSQRYTLVNGQGNFGNIDGDSPAAMRYTE 132 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 ++MT V+EL+L+G+D+DAVDFRDTY+E +SEP V P FPNLLANG+SGIAVGMATSIPS Sbjct: 133 SKMTAVSELLLEGIDQDAVDFRDTYDESNSEPTVLPGAFPNLLANGSSGIAVGMATSIPS 192 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN E+C+AAL LI +P+ ++EKL+E+I GPDFPTGGII++SR+SI+ESYR GRGGFRVR Sbjct: 193 HNAHELCDAALHLIKHPDATVEKLVEFIPGPDFPTGGIIIDSRDSIIESYRTGRGGFRVR 252 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313 A+W E++GRG + IV+TEIP+QVQKSRLIEKIAEL+IA+++PLLEDIRDESAED+R+VL Sbjct: 253 AKWQTEDLGRGGYQIVITEIPFQVQKSRLIEKIAELLIARKLPLLEDIRDESAEDIRVVL 312 Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373 PK RS+DP +LMES+F L+++E+RFPLNMNVLSMGR+P+VM L+ +LKEWL HRREVL Sbjct: 313 VPKTRSVDPTILMESMFKLTELESRFPLNMNVLSMGRIPRVMALNEVLKEWLDHRREVLQ 372 Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILN 433 RRS FR+ AIDRR+EIL GLLIAYLNIDE+I IIR ED+PKPVM++R+ LT+ QV+AILN Sbjct: 373 RRSRFRLAAIDRRLEILGGLLIAYLNIDEVIRIIREEDEPKPVMMARWDLTDIQVEAILN 432 Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493 +RLR+LRKLEE++I+ E D L EK +I++LL S +QW +A EI EVK+ F+K+T++G Sbjct: 433 MRLRALRKLEEFEIRKEFDELTKEKGEIEALLASDDKQWQTVAWEIGEVKKKFAKATEVG 492 Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKI 553 RRRT F + AD+ +QQAMIEKEPITVVIS +GWIR+LK H D + L FKEGD LKI Sbjct: 493 RRRTQFADAPEADEEAIQQAMIEKEPITVVISEKGWIRALKGHIADTATLTFKEGDGLKI 552 Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613 A A TTD+IL+++T GKA+TL L GRGHGE +++++D++++Q ++TAFV+D + K Sbjct: 553 AFPAQTTDKILIVTTGGKAFTLGGDKLPGGRGHGEPLRIMVDMDNDQAVLTAFVHDPSRK 612 Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIF 673 L+VS+ GN F+V E+E++ANTRKGK + V+ E+ +L+V V+GDHVAVVGENRKLL+F Sbjct: 613 QLIVSTAGNGFVVPEAELVANTRKGKQIMNVALPEETQLLVPVSGDHVAVVGENRKLLVF 672 Query: 674 SIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKR 733 + Q+PEMSRGKGVRLQ YKDGGISDV CF I GL W DSAGR++ +++++L WL R Sbjct: 673 PLAQVPEMSRGKGVRLQRYKDGGISDVRCFAISGGLVWEDSAGRTFTKNKDELAEWLADR 732 Query: 734 GGVGSLVPKGFPRSGKF 750 G VPKGFPRSGKF Sbjct: 733 ATAGRTVPKGFPRSGKF 749 >gi|163759186|ref|ZP_02166272.1| putative topoisomerase IV subunit [Hoeflea phototrophica DFL-43] gi|162283590|gb|EDQ33875.1| putative topoisomerase IV subunit [Hoeflea phototrophica DFL-43] Length = 748 Score = 1015 bits (2624), Expect = 0.0, Method: Compositional matrix adjust. Identities = 467/736 (63%), Positives = 603/736 (81%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 ++++ V L+ ALEERYLAYALSTI RA+PD+RDG KPVHRRI++AMS+MGL G +FKK Sbjct: 12 DDIQGVDLKKALEERYLAYALSTIMHRALPDVRDGLKPVHRRIVYAMSDMGLRSGGSFKK 71 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 A+IVGEV+G HPHGDQS+YD+LVRLAQ F RYPL++GQGNFGNIDGD+AAA RYTE+ Sbjct: 72 CAKIVGEVMGNFHPHGDQSIYDALVRLAQDFAVRYPLVNGQGNFGNIDGDNAAAMRYTES 131 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 +MT VAEL+++G+ EDAVDFR TY+EE+SEP V P FPNLLANG +GIAVGMATSIP H Sbjct: 132 KMTAVAELLIEGIGEDAVDFRTTYDEENSEPTVLPGAFPNLLANGATGIAVGMATSIPPH 191 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 N E+C+AAL LI P+ ++E LLE++ GPDFPTGGI++ESRE+++E+Y+ GRGGFRVRA Sbjct: 192 NAAELCDAALLLIRKPDATVEDLLEHVQGPDFPTGGIVIESREAMLEAYKTGRGGFRVRA 251 Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314 +W E+ GRG + IV+TE+PYQVQKSRLIEKIAEL+IA+R+PLL+D+RDESAEDVR+VL Sbjct: 252 KWETEDTGRGGYQIVITEMPYQVQKSRLIEKIAELLIARRLPLLDDVRDESAEDVRLVLI 311 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 PK+RS+DP LLMES+F L+D+E+R PLN+NVLSMGRVP+VM L +L EWLAHRREVL R Sbjct: 312 PKSRSVDPTLLMESLFRLTDLESRIPLNLNVLSMGRVPKVMGLGEVLSEWLAHRREVLQR 371 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNL 434 RS R+ AI+RR+E+L G LIAYLN+DE+I IIR ED+PK ++ F L++ Q +AILN+ Sbjct: 372 RSRHRLAAIERRLELLSGFLIAYLNLDEVIRIIREEDEPKLELMKTFELSDVQAEAILNM 431 Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494 RLRSLRKLEE +I+ E D L AEK +I+SLL S +QW +A E+ V++ FSK T+LG Sbjct: 432 RLRSLRKLEELEIRKEFDALTAEKAEIESLLASDAKQWQTVAWEVGNVRKTFSKETELGA 491 Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIA 554 RRT F E AD A ++QAMIEKEPITVVIS +GWIR +K H D ++L FK+GD LK+A Sbjct: 492 RRTNFAEAPVADLAAIEQAMIEKEPITVVISEKGWIRGMKGHLPDFASLQFKDGDGLKLA 551 Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614 HA+TTD++++++T GKAYTL A L GRGHGE +++++D++++Q ++TAFV+DS KL Sbjct: 552 FHANTTDKLVIVTTGGKAYTLGADKLPGGRGHGEPLRIMVDMDNDQAVLTAFVHDSARKL 611 Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFS 674 L+ S+ GN FIV ES+++ANTRKGK + V ++ +L V V+GDHVAV+GENRK+LIF+ Sbjct: 612 LMASTAGNGFIVAESDMVANTRKGKQIMNVGLPDETRLCVPVSGDHVAVIGENRKMLIFA 671 Query: 675 IDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRG 734 + Q+PEMSRGKGVRLQ YKDGGI+D+ CF + +GLTW DSAGR++NR++ +L W+ R Sbjct: 672 LSQLPEMSRGKGVRLQRYKDGGIADIRCFAMADGLTWEDSAGRAHNRTQAELTEWIADRA 731 Query: 735 GVGSLVPKGFPRSGKF 750 G LVPKGFPRSGKF Sbjct: 732 QAGRLVPKGFPRSGKF 747 >gi|325292532|ref|YP_004278396.1| DNA topoisomerase IV subunit A [Agrobacterium sp. H13-3] gi|325060385|gb|ADY64076.1| DNA topoisomerase IV subunit A [Agrobacterium sp. H13-3] Length = 750 Score = 1004 bits (2597), Expect = 0.0, Method: Compositional matrix adjust. Identities = 488/737 (66%), Positives = 607/737 (82%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 ++N+ V L+ ALEERYLAYALSTI RA+PD+RDG KPVHRRIIHAMSEMG+ +AFK Sbjct: 12 DDNIHPVDLKAALEERYLAYALSTIMHRALPDVRDGLKPVHRRIIHAMSEMGIRPNSAFK 71 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 K ARIVG+VIGK HPHGDQSVYD+LVRLAQ F QRYP++ GQGNFGNIDGD AAAYRYTE Sbjct: 72 KCARIVGDVIGKFHPHGDQSVYDALVRLAQDFSQRYPIVDGQGNFGNIDGDGAAAYRYTE 131 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 ARMT VA L+L+G+ EDAVDFR TYNEED EPVV P FPNLLANG SGIAVGMATSIP Sbjct: 132 ARMTDVAALLLEGIGEDAVDFRATYNEEDEEPVVLPGAFPNLLANGASGIAVGMATSIPP 191 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN E+C+AAL LI +P+ ++EKL+E+I GPD PTGG+I+ESRE+I+E+Y+ GRGGFRVR Sbjct: 192 HNAHELCDAALHLIKHPDATVEKLVEFIPGPDLPTGGVIIESRENILEAYKTGRGGFRVR 251 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313 A+W E++GRG + IV+TEIP+QVQKSRLIEKIAEL++A+++PLLED+RDESAEDVRIVL Sbjct: 252 AKWETEDLGRGGYQIVITEIPFQVQKSRLIEKIAELLLARKLPLLEDVRDESAEDVRIVL 311 Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373 PKNR++D LLMES+F LSD+E+R PLNMNVLS+GRVP+VM L+ +L EWLAHR++VL Sbjct: 312 VPKNRTVDATLLMESLFRLSDLESRLPLNMNVLSLGRVPKVMALNEVLSEWLAHRKDVLV 371 Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILN 433 RRS R+ AIDRR+EIL GLL+AYLN+DE+I IIR ED+PK VM++++SLT+NQ +AILN Sbjct: 372 RRSRHRLAAIDRRLEILGGLLVAYLNLDEVIRIIREEDEPKQVMMAKWSLTDNQAEAILN 431 Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493 +RLR+LRKLEE++I+ E D L +EK +I+ LL S ++QW +A EI EVK+ ++K+T++G Sbjct: 432 MRLRNLRKLEEFEIRKEFDELSSEKAEIEGLLASDEKQWQTVAWEIGEVKKKYAKATEIG 491 Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKI 553 RRRT F + AD +QQAMIEKEP+T+VIS +GWIR+LK H D SAL FKEGD K+ Sbjct: 492 RRRTQFADAPDADIEAIQQAMIEKEPVTIVISQKGWIRALKGHMSDTSALTFKEGDGPKL 551 Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613 A A TTD++LLL+T GKAYTL A L GRGHGE I++++D+ ++QDI+TAFV+D + K Sbjct: 552 AFPAQTTDKLLLLTTGGKAYTLGADKLPGGRGHGEPIRIMVDMENDQDILTAFVHDPSRK 611 Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIF 673 LL+VS+ GN FIV ESE++ANTRKGK + V+ ++ KL V VTGDHVAVVGENRKLL F Sbjct: 612 LLLVSTGGNGFIVAESEMVANTRKGKQIMNVAMPDEAKLAVPVTGDHVAVVGENRKLLAF 671 Query: 674 SIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKR 733 + Q+PEMSRGKGVRLQ YKDGG+ DV CF + +GL+W D+AGR + + +L WL R Sbjct: 672 PLSQVPEMSRGKGVRLQRYKDGGVVDVKCFALADGLSWSDTAGRLFTKVGEELREWLADR 731 Query: 734 GGVGSLVPKGFPRSGKF 750 VG VPKGFPRSGKF Sbjct: 732 ATVGRTVPKGFPRSGKF 748 >gi|240850737|ref|YP_002972137.1| DNA topoisomerase IV subunit A [Bartonella grahamii as4aup] gi|240267860|gb|ACS51448.1| DNA topoisomerase IV subunit A [Bartonella grahamii as4aup] Length = 749 Score = 994 bits (2570), Expect = 0.0, Method: Compositional matrix adjust. Identities = 467/739 (63%), Positives = 599/739 (81%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 +E+++ + LR AL+ERYLAYALSTI RA+PD+RDG KPVHRRI+HAM + L+ G ++ Sbjct: 11 KEHIEPIELRSALQERYLAYALSTITHRALPDVRDGLKPVHRRIVHAMRLLKLNPGQSYA 70 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 K ARIVG+V+GK HPHGD S+YD+LVRLAQ F RYPL+ GQGNFGNIDGD+AAA RYTE Sbjct: 71 KCARIVGDVMGKFHPHGDASIYDALVRLAQSFAVRYPLVDGQGNFGNIDGDNAAAMRYTE 130 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 ARMT+VA L+L+G++E+A+DFR TYNEED EPVV P FPNLLANG+SGIAVGMATSIP Sbjct: 131 ARMTEVAALLLEGINENAIDFRLTYNEEDEEPVVLPGAFPNLLANGSSGIAVGMATSIPP 190 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HNV E+C+AAL LI +P+++ E+L ++++GPDFPTGGI+VE ++SI ESYR+GRG FR+R Sbjct: 191 HNVAELCDAALHLIAHPDVNDEELNQFVLGPDFPTGGILVEPKKSIEESYRVGRGFFRLR 250 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313 +RW E RGS+ IVVTEIPYQ+QKSRLIEK AEL++A+R+P+LEDI+DESAED+RIVL Sbjct: 251 SRWHQESGSRGSYVIVVTEIPYQIQKSRLIEKTAELLLARRLPMLEDIQDESAEDIRIVL 310 Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373 PKNR++DP+LLMES+F L+D E RFPLN+NVLS+G++P V+ L L++WL HR+EVL Sbjct: 311 VPKNRTVDPELLMESLFKLTDFEVRFPLNLNVLSLGKIPNVLSLRESLQQWLEHRQEVLI 370 Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILN 433 RRS +R+ ID R+EIL G LIAYLN+DE+I IIR ED+PK ++SRF LTENQ +AILN Sbjct: 371 RRSHYRLDQIDCRLEILHGYLIAYLNLDEVIQIIREEDEPKKQLISRFELTENQAEAILN 430 Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493 +RLRSLRKLEE++I+ E ++L AEKEK+ +LL S +QW I+ EI++V+ F T LG Sbjct: 431 MRLRSLRKLEEFEIRKEFESLKAEKEKLQNLLASPIKQWKIISEEIKKVRNTFGPETPLG 490 Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKI 553 +RRTTF E R D +QQAMIEKEPIT+VIS +GW+R+LK H D AL FKEGDSLK+ Sbjct: 491 KRRTTFEEAPRHDLDDIQQAMIEKEPITIVISEKGWMRALKGHLNDYKALSFKEGDSLKL 550 Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613 A A TTD+I+L+ST GK + + A +L GRGHGE I+LL+D++ D++TAFV+ + K Sbjct: 551 AFPAFTTDKIVLISTGGKFFAIGANSLPGGRGHGEPIRLLVDMDDEHDVLTAFVHHAEEK 610 Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIF 673 LL+VSS GN FIV +E+IANTRKGK + V + +K+KL V+V GDHVAVVGENRK+LIF Sbjct: 611 LLLVSSHGNGFIVSSAEVIANTRKGKQVMNVKAPDKVKLCVQVNGDHVAVVGENRKMLIF 670 Query: 674 SIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKR 733 SI+QIPEM+RGKGVRLQ YK+GG+ D F + EGL+W D+A R +NR +DL W+G R Sbjct: 671 SIEQIPEMNRGKGVRLQRYKEGGVVDAKTFNLSEGLSWQDTAERIFNRQADDLFEWMGMR 730 Query: 734 GGVGSLVPKGFPRSGKFLS 752 GVG LVP+GFP+SGKF++ Sbjct: 731 AGVGRLVPRGFPKSGKFIN 749 >gi|222085496|ref|YP_002544026.1| DNA topoisomerase IV, A subunit [Agrobacterium radiobacter K84] gi|221722944|gb|ACM26100.1| DNA topoisomerase IV, A subunit [Agrobacterium radiobacter K84] Length = 752 Score = 992 bits (2565), Expect = 0.0, Method: Compositional matrix adjust. Identities = 477/738 (64%), Positives = 614/738 (83%), Gaps = 1/738 (0%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 ++++ V L+ ALEERYLAYALSTI RA+PD+RDG KPVHRRI++AMSEMGL AAF+ Sbjct: 13 DDSIVPVDLKAALEERYLAYALSTIMHRALPDVRDGLKPVHRRIVYAMSEMGLRPNAAFR 72 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 K A+IVGEV+G HPHGDQS+YD+L RLAQ F QRY L++GQGNFGNIDGDS AA RYTE Sbjct: 73 KCAKIVGEVMGNYHPHGDQSIYDALARLAQDFSQRYTLVNGQGNFGNIDGDSPAAMRYTE 132 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 ++MT V+EL+L+G+D+DAVDFRDTY+E +SEP+V P FPNLLANG+SGIAVGMATSIPS Sbjct: 133 SKMTAVSELLLEGIDQDAVDFRDTYDESNSEPIVLPGAFPNLLANGSSGIAVGMATSIPS 192 Query: 194 HNVQEICEAALALIDNPEISIEKLLE-YIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252 HN E+C+AAL LI + + ++E L+E YI GPDFPTGGII++ R SI+ESY+ GRGGFRV Sbjct: 193 HNAHELCDAALHLIKDRDATVETLVELYIPGPDFPTGGIIIDDRRSIIESYKTGRGGFRV 252 Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312 RA+W +E++GRG + IV+TEIP+QVQKSRLIEKIAEL++A+++PLLEDIRDESAED+R+V Sbjct: 253 RAKWEIEDLGRGGYQIVITEIPFQVQKSRLIEKIAELLLARKLPLLEDIRDESAEDIRVV 312 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 L PK+R++D +LMES+F LS++E+RFPLNMNVLSMGR+P+VM L+ +LKEWL HRREVL Sbjct: 313 LIPKSRTVDATILMESMFKLSELESRFPLNMNVLSMGRIPKVMALNEVLKEWLDHRREVL 372 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAIL 432 RRS FR+ AI++R+EIL G LIAYLNIDE+IAIIR ED+PKPVM+ RF LT+NQV+AIL Sbjct: 373 QRRSRFRLAAIEKRLEILGGFLIAYLNIDEVIAIIREEDEPKPVMMERFGLTDNQVEAIL 432 Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492 N+RLRSLRKLEE++I+ E D L EK +I+ LL S ++QW +A EI EVK+ F+K+T++ Sbjct: 433 NMRLRSLRKLEEFEIRKEFDGLSKEKSEIEVLLASDEKQWQTVAWEIGEVKKKFAKATEV 492 Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLK 552 GRRRT F E AD A LQQAMIEKEPITVV+S +GWIR+LK H + S L FKEGD+LK Sbjct: 493 GRRRTQFAEAPEADDAALQQAMIEKEPITVVVSEKGWIRALKGHISETSTLTFKEGDALK 552 Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612 +A A TTD+IL+++T GKAYTL L GRGHGE +++++D+ ++QD++TAFV+D Sbjct: 553 VAFPAQTTDKILIITTGGKAYTLGGDKLPGGRGHGEPLRIMVDMENDQDVLTAFVHDPQR 612 Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLI 672 K LV S+ GN F+V E+E++ANTRKGK + +++ ++ KL+V V+GDHVAVVGENRK+++ Sbjct: 613 KQLVASTAGNGFVVAETELVANTRKGKQIMNLTTPDETKLLVPVSGDHVAVVGENRKMVV 672 Query: 673 FSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGK 732 F + QIPEMSRGKGVRLQ YKDGG+SD+ CF I +GLTW DSAGR++ +++++L WLG Sbjct: 673 FPLSQIPEMSRGKGVRLQRYKDGGVSDIKCFAIADGLTWEDSAGRTFTKTKDELAEWLGD 732 Query: 733 RGGVGSLVPKGFPRSGKF 750 R G VPKGFPR+G+F Sbjct: 733 RSAAGRAVPKGFPRTGRF 750 >gi|163868505|ref|YP_001609714.1| DNA topoisomerase IV subunit A [Bartonella tribocorum CIP 105476] gi|161018161|emb|CAK01719.1| topoisomerase IV subunit A [Bartonella tribocorum CIP 105476] Length = 749 Score = 991 bits (2561), Expect = 0.0, Method: Compositional matrix adjust. Identities = 470/737 (63%), Positives = 593/737 (80%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 +E+++ + LR AL+ERYLAYALSTI RA+PD+RDG KPVHRRI+HAM + L+ G ++ Sbjct: 11 KEHIEPIELRSALQERYLAYALSTITHRALPDVRDGLKPVHRRIVHAMRLLKLNPGQSYA 70 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 K ARIVG+V+GK HPHGD S+YD+LVRLAQ F RYPL+ GQGNFGNIDGD+AAA RYTE Sbjct: 71 KCARIVGDVMGKFHPHGDASIYDALVRLAQSFAVRYPLVDGQGNFGNIDGDNAAAMRYTE 130 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 ARMT+VA L+L+G++E+A+DFR TYNEED EPVV P FPNLLANG+SGIAVGMATSIP Sbjct: 131 ARMTEVAALLLEGINENAIDFRLTYNEEDEEPVVLPGAFPNLLANGSSGIAVGMATSIPP 190 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HNV E+C+AAL LI +P+ E L ++++GPDFPTGGI+VE +ESI ESYR+GRG FR+R Sbjct: 191 HNVAELCDAALHLIAHPDTRDEDLNQFVLGPDFPTGGILVEPKESIEESYRIGRGFFRLR 250 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313 +RW E RGS+ IVVTEIPYQVQKSRLIEK AEL++A+R+P+LEDI+DESAED+RIVL Sbjct: 251 SRWHQETGSRGSYVIVVTEIPYQVQKSRLIEKTAELLLARRLPMLEDIQDESAEDIRIVL 310 Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373 PKNRS+DP+LLMES+F L+D E RFPLN+NVLS+G++P V+ L L++WL HR+EVL Sbjct: 311 VPKNRSVDPELLMESLFKLTDFEVRFPLNLNVLSLGKIPNVLSLRESLQQWLVHRQEVLI 370 Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILN 433 RRS +R+ ID R+EIL G LIAYLN+DE+I IIR ED+PK +++RF LTENQ +AILN Sbjct: 371 RRSHYRLDQIDCRLEILHGYLIAYLNLDEVIQIIREEDEPKRKLINRFELTENQAEAILN 430 Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493 +RLRSLRKLEE++I+ E + L AEKEK+ +LL S +QW ++ EI++V+ F T LG Sbjct: 431 MRLRSLRKLEEFEIRKEFETLKAEKEKLQNLLASPIKQWKIVSEEIKKVRNTFGPETLLG 490 Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKI 553 +RRTTF E R D +QQAMIEKEP+TVVIS +GW+R+LK H D AL FKEGDSLK+ Sbjct: 491 KRRTTFEEAPRHDLDDIQQAMIEKEPVTVVISEKGWMRALKGHLNDYKALSFKEGDSLKL 550 Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613 A A TTD+I+L+ST GK + L A +L GRGHGE I+LL+D++ D++TAFV+ + K Sbjct: 551 AFPAFTTDKIVLISTGGKFFALGANSLPGGRGHGEPIRLLVDMDDEHDVLTAFVHHAEEK 610 Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIF 673 LL+VSS+GN FIV +E+IANTRKGK + V S +K+KL V GDHVAVVGENRK+LIF Sbjct: 611 LLLVSSQGNGFIVPAAEVIANTRKGKQVMNVKSPDKVKLCAPVHGDHVAVVGENRKMLIF 670 Query: 674 SIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKR 733 SI+QIPEM+RGKGVRLQ YK+GGI D F + EGL+W D+A R +NR +DL+ W+G R Sbjct: 671 SIEQIPEMNRGKGVRLQRYKEGGIVDAKTFNLSEGLSWQDTAERIFNRQADDLIEWMGIR 730 Query: 734 GGVGSLVPKGFPRSGKF 750 GVG +VPKGFP+SGKF Sbjct: 731 AGVGRMVPKGFPKSGKF 747 >gi|110633477|ref|YP_673685.1| DNA topoisomerase IV subunit A [Mesorhizobium sp. BNC1] gi|110284461|gb|ABG62520.1| DNA topoisomerase IV subunit A [Chelativorans sp. BNC1] Length = 750 Score = 988 bits (2555), Expect = 0.0, Method: Compositional matrix adjust. Identities = 453/738 (61%), Positives = 586/738 (79%), Gaps = 2/738 (0%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 ++ V L+ ALEERYLAYALSTI RA+PD+RDG KPVHRRI+H M + L+ F K Sbjct: 12 DSASPVDLKKALEERYLAYALSTIMHRALPDVRDGLKPVHRRIMHTMRLLRLNPEQGFAK 71 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 ARIVG+V+GK HPHGDQS+YD+LVRLAQPF RYPL+ GQGNFGNIDGD+AAA RYTEA Sbjct: 72 CARIVGDVMGKFHPHGDQSIYDALVRLAQPFAMRYPLVDGQGNFGNIDGDNAAAMRYTEA 131 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 RMT+VA +L G+ EDAVDFR TYNEED EP+V P FPNLL NG+SGIAVGMATS+P H Sbjct: 132 RMTEVAAELLSGITEDAVDFRPTYNEEDEEPIVLPGAFPNLLCNGSSGIAVGMATSVPPH 191 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 N E+C+AALALID+P++ + +LL+++ GPDFPTGGIIVE R SI E+Y GRGGFR+RA Sbjct: 192 NAAEVCDAALALIDDPDVPVSRLLDFVQGPDFPTGGIIVEGRASIREAYETGRGGFRLRA 251 Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314 RW E+ GRG+W +VVTEIPY VQKSRLIEKIAELI+A+++PLLED+RDESAED+R+VL Sbjct: 252 RWHKEDQGRGTWNVVVTEIPYGVQKSRLIEKIAELILARKLPLLEDVRDESAEDIRVVLV 311 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 PK+R+++P+LLMES+F L+D+ETRFPLNMNVLS G+VP V+ L +L+EWL HRREVL R Sbjct: 312 PKSRAVEPELLMESLFRLTDLETRFPLNMNVLSRGKVPSVLSLKDVLREWLDHRREVLVR 371 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNL 434 RS R+ I++R+EIL G L+AYLNIDE+I IIR ED+PKPVM+ RF+LT+NQ +AILN+ Sbjct: 372 RSQHRLAEIEKRLEILAGYLVAYLNIDEVIGIIREEDEPKPVMMERFNLTDNQAEAILNM 431 Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS--KSTDL 492 RLR+LRKLEE++I++E D L EK +I++LL S +QW + E+ +V++ F K+ L Sbjct: 432 RLRALRKLEEFEIRTEFDKLSEEKTQIEALLASEAKQWKTVRWEVAKVRQTFDPEKNPAL 491 Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLK 552 GRRRTTF + D +QQAMIE+EPITV++S +GW+R++K H DLS + FKEGDSLK Sbjct: 492 GRRRTTFGDAPSHDLEDVQQAMIEREPITVILSEKGWLRAMKGHLTDLSTVVFKEGDSLK 551 Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612 ++ HA TTD+ILL +T GK YT+ L GRGHGE +++++D+ ++Q +VTAF +D Sbjct: 552 LSFHAQTTDKILLFTTGGKFYTIGGDRLPGGRGHGEPVRIMVDMENDQAVVTAFAHDPER 611 Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLI 672 +LL+ S GN FIV E E++ANTRKGK + V + ++ +L + V+GDH A+VGENRKLL+ Sbjct: 612 RLLIASYAGNGFIVPEKEVVANTRKGKQIMNVKTPDEARLCIPVSGDHAAIVGENRKLLV 671 Query: 673 FSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGK 732 F ++Q+PEM RGKGVRLQ YKDGGI+D+ F I +GLTW DSA R++ RS+++L W+G Sbjct: 672 FPLEQVPEMVRGKGVRLQRYKDGGIADLKTFAIADGLTWQDSADRTFTRSKDELAEWIGD 731 Query: 733 RGGVGSLVPKGFPRSGKF 750 R G + PKGFPR+GKF Sbjct: 732 RAAAGRMAPKGFPRTGKF 749 >gi|319404169|emb|CBI77762.1| topoisomerase IV subunit A [Bartonella rochalimae ATCC BAA-1498] Length = 749 Score = 986 bits (2550), Expect = 0.0, Method: Compositional matrix adjust. Identities = 464/739 (62%), Positives = 591/739 (79%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 +E+++ + LR AL+ERYLAYALSTI RA+PD+RDG KPVHRRIIHAM + L+ G A+ Sbjct: 11 KEHIEPIELRSALQERYLAYALSTITHRALPDVRDGLKPVHRRIIHAMRLLRLNPGQAYA 70 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 K ARIVG+V+GK HPHGD S+YD+LVRLAQ F RYPLI GQGNFGNIDGD+AAA RYTE Sbjct: 71 KCARIVGDVMGKFHPHGDASIYDALVRLAQSFSVRYPLIDGQGNFGNIDGDNAAAMRYTE 130 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 ARMT+VA L+L+G++E+A+DFR TYNEED EP+V P FPNLLANG++GIAVGMATSIP Sbjct: 131 ARMTEVAILLLEGINENAIDFRLTYNEEDEEPIVLPGAFPNLLANGSAGIAVGMATSIPP 190 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HNV E+C+AAL LI NP + L ++++GPDFPTGGI+VE ++SI +SYR GRG FR+R Sbjct: 191 HNVAELCDAALYLIANPHADHKDLSQFVLGPDFPTGGILVEPKKSIEDSYRTGRGLFRLR 250 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313 +RW EE RGS+ IVVTEIPYQVQKSRLIEK AEL++A+R+P+LEDI DESAED+RIVL Sbjct: 251 SRWHQEEGNRGSYVIVVTEIPYQVQKSRLIEKTAELLLARRLPMLEDIHDESAEDIRIVL 310 Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373 PKNR++DP+LLMES+F L+D E RFPLN+NVL++G+VP V+ L L++WL HR+EVL Sbjct: 311 VPKNRTIDPELLMESLFKLTDFEVRFPLNLNVLTLGKVPNVLSLRESLQQWLQHRKEVLI 370 Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILN 433 RRS++R+ ID R+EIL+G LIAYLN++E+I IIR D+PK ++ RF LTENQ ++ILN Sbjct: 371 RRSNYRLNEIDCRLEILQGYLIAYLNLNEVIQIIREHDEPKKELILRFKLTENQAESILN 430 Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493 +RLRSLRKLEE+Q++ E D+L EKEK+ +LLNS +QW IA EI V++IF T LG Sbjct: 431 MRLRSLRKLEEFQLRKEFDSLKIEKEKLQNLLNSNIKQWKVIAEEITRVRKIFGPETFLG 490 Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKI 553 +RRTTF + R D+ + QAMIEKEP+T+VIS +GW+R+LK H D L FKEGD LK+ Sbjct: 491 KRRTTFEDAPRHDENDIHQAMIEKEPVTIVISEKGWVRALKGHLNDYKTLSFKEGDGLKL 550 Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613 A A TTD+I+++ST GK +T+ A L GRGHGE I++L+D+N+ DI+TAFV++ K Sbjct: 551 AFPAFTTDKIIVISTGGKFFTISANTLPGGRGHGEPIRILVDMNNEHDILTAFVHNVQGK 610 Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIF 673 L++SS GN FIV E++IIANTRKGK + V S + +KL + V GD++A+VGENRK+LIF Sbjct: 611 RLLISSYGNGFIVSETDIIANTRKGKQVMNVKSLDSLKLCIPVEGDYIAIVGENRKMLIF 670 Query: 674 SIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKR 733 SI+QIPEMSRGKGVRLQ YKDGGI D F + EGL+W D+A RS+NR N+L+ W+G R Sbjct: 671 SIEQIPEMSRGKGVRLQRYKDGGIVDAKTFTLSEGLSWQDTAERSFNRQANELVEWMGTR 730 Query: 734 GGVGSLVPKGFPRSGKFLS 752 G G LVPKGFP+SGKF S Sbjct: 731 AGTGRLVPKGFPKSGKFFS 749 >gi|319407186|emb|CBI80825.1| topoisomerase IV subunit A [Bartonella sp. 1-1C] Length = 749 Score = 986 bits (2548), Expect = 0.0, Method: Compositional matrix adjust. Identities = 464/739 (62%), Positives = 591/739 (79%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 +E+++ + LR AL+ERYLAYALSTI RA+PD+RDG KPVHRRI+HAM + L+ G A+ Sbjct: 11 KEHIEPIELRSALQERYLAYALSTITHRALPDVRDGLKPVHRRIVHAMRLLRLNPGQAYA 70 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 K ARIVG+V+GK HPHGD S+YD+LVRLAQ F RYPLI GQGNFGNIDGD+AAA RYTE Sbjct: 71 KCARIVGDVMGKFHPHGDASIYDALVRLAQSFSVRYPLIDGQGNFGNIDGDNAAAMRYTE 130 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 ARMT+VA L+L+G++E+A+DFR TYNEED EP+V P FPNLLANG++GIAVGMATSIP Sbjct: 131 ARMTEVAILLLEGINENAIDFRLTYNEEDEEPIVLPGAFPNLLANGSAGIAVGMATSIPP 190 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HNV E+C+AAL LI NP + L ++++GPDFPTGGI+VE ++SI +SYR GRG FR+R Sbjct: 191 HNVAELCDAALYLIANPHADHKDLSQFVLGPDFPTGGILVEPKKSIEDSYRTGRGLFRLR 250 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313 +RW EE RGS+ IVVTEIPYQVQKSRLIEK AEL++A+R+P+LEDI DESAED+RIVL Sbjct: 251 SRWHQEEGNRGSYVIVVTEIPYQVQKSRLIEKTAELLLARRLPMLEDIHDESAEDIRIVL 310 Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373 PKNR++DP+LLMES+F L+D E RFPLN+NVL++G+VP V+ L L++WL HR+EVL Sbjct: 311 VPKNRTIDPELLMESLFKLTDFEVRFPLNLNVLTLGKVPNVLSLRESLQQWLQHRKEVLI 370 Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILN 433 RRS++R+ ID R+EIL+G LIAYLN++E+I IIR D+PK ++ RF LTENQ ++ILN Sbjct: 371 RRSNYRLNEIDCRLEILQGYLIAYLNLNEVIQIIREHDEPKKELILRFKLTENQAESILN 430 Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493 +RLRSLRKLEE+Q++ E D+L EKEK+ SLLNS +QW IA EI V++IF T LG Sbjct: 431 MRLRSLRKLEEFQLRKEFDSLKIEKEKLQSLLNSNIKQWKVIAEEITRVRKIFGPETFLG 490 Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKI 553 +RRTTF + R D+ + QAMIEKEP+T+VIS +GW+R+LK H D L FKEGD LK+ Sbjct: 491 KRRTTFEDAPRHDENDIHQAMIEKEPVTIVISEKGWVRALKGHLNDYKTLSFKEGDGLKL 550 Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613 A A TTD+I+++ST GK +T+ A L GRGHGE I++L+D+N+ DI+TAFV++ K Sbjct: 551 AFPAFTTDKIIVISTGGKFFTISANTLPGGRGHGEPIRILVDMNNEHDILTAFVHNVQGK 610 Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIF 673 L++SS GN FIV E++IIANTRKGK + V S + +KL + V GD++A+VGENRK+LIF Sbjct: 611 RLLISSYGNGFIVSETDIIANTRKGKQVMNVKSLDSLKLCIPVEGDYIAIVGENRKMLIF 670 Query: 674 SIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKR 733 SI+QIPEMSRGKGVRLQ YKDGGI D F + EGL+W D+A RS+NR N+L+ W+G R Sbjct: 671 SIEQIPEMSRGKGVRLQRYKDGGIVDAKTFTLSEGLSWQDTAERSFNRQANELVEWMGTR 730 Query: 734 GGVGSLVPKGFPRSGKFLS 752 G G LVPKGFP+SGKF S Sbjct: 731 AGTGRLVPKGFPKSGKFSS 749 >gi|49475728|ref|YP_033769.1| DNA topoisomerase IV subunit A [Bartonella henselae str. Houston-1] gi|49238535|emb|CAF27771.1| Topoisomerase IV subunit a [Bartonella henselae str. Houston-1] Length = 749 Score = 979 bits (2531), Expect = 0.0, Method: Compositional matrix adjust. Identities = 461/737 (62%), Positives = 591/737 (80%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 +E+++++ LR AL+ERYLAYALSTI RA+PD+RDG KPVHRRI+HAM + L+ G ++ Sbjct: 11 KEHIESIELRSALQERYLAYALSTITHRALPDVRDGLKPVHRRIVHAMRLLKLNPGHSYA 70 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 K ARIVG+V+GK HPHGD S+YD+LVRLAQ F RYPL+ GQGNFGNIDGD+AAA RYTE Sbjct: 71 KCARIVGDVMGKFHPHGDASIYDALVRLAQNFAVRYPLVDGQGNFGNIDGDNAAAMRYTE 130 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 ARMT+VA L+L+G++E+A+DFR TYNEED EP+V P FPNLLANG+SGIAVGMATSIP Sbjct: 131 ARMTEVAALLLEGINENAIDFRLTYNEEDEEPIVLPGAFPNLLANGSSGIAVGMATSIPP 190 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HNV E+C+AAL LI +P E+L +++GPDFPTGGI+VE ++SI ESYR+GRG FR+R Sbjct: 191 HNVSELCDAALHLIAHPNARDEELNHFVLGPDFPTGGILVEPKKSIEESYRVGRGFFRLR 250 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313 +RW E RGS+ +VVTEIPYQVQKSRLIEK AEL++A+R+P+LEDIRDESAED+RIVL Sbjct: 251 SRWHQETGNRGSYVLVVTEIPYQVQKSRLIEKTAELLLARRLPMLEDIRDESAEDIRIVL 310 Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373 PKNR++DP++LMES+F L+D E RFPLN+NVLS G+VP V+ L LK+WL HR+EVL Sbjct: 311 IPKNRTVDPEILMESLFKLTDFEIRFPLNLNVLSFGKVPNVLSLRESLKQWLEHRQEVLI 370 Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILN 433 RRS +++ I+RR+EIL G LI YLN+DE+I IIR ED+PK ++ RF LTENQ +AILN Sbjct: 371 RRSRYQLDEIERRLEILHGYLITYLNLDEVIQIIREEDEPKKKLIDRFELTENQAEAILN 430 Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493 +RLRSLRKLEE++I+ E + L AEKEK+ +LL+S +QW I+ EI +V+++F T LG Sbjct: 431 MRLRSLRKLEEFEIRKEFETLRAEKEKLQNLLDSRTKQWKIISEEIIKVRKVFGPHTLLG 490 Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKI 553 +RRTTF E R D + QAMIEKEP+T+VIS +GW+R+LK H D +AL FKEGD LK+ Sbjct: 491 KRRTTFEEAPRHDFDDIYQAMIEKEPVTIVISEKGWMRALKGHLSDYNALSFKEGDCLKL 550 Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613 A A TTD+I+++ST GK + + A +L GRGHGE I++L+D++ D++TAFV+ + K Sbjct: 551 AFPAFTTDKIVVISTGGKFFAIAANSLPGGRGHGEPIRILVDMDDEHDLLTAFVHHTQEK 610 Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIF 673 LL+VSS GN FIV +E+IANTRKGK + V +K+KL V V GDHVAVVGENRK+LIF Sbjct: 611 LLLVSSHGNGFIVPATEVIANTRKGKQVMNVKFPDKVKLCVPVKGDHVAVVGENRKMLIF 670 Query: 674 SIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKR 733 +I+QIPEMSRGKGVRLQ YK GG+ DV F + EGL+W D+A R +NR +DL+ W+G R Sbjct: 671 AIEQIPEMSRGKGVRLQRYKQGGVVDVKTFNLSEGLSWQDTAERCFNRQASDLIEWMGVR 730 Query: 734 GGVGSLVPKGFPRSGKF 750 GVG +VPKGFP+SGKF Sbjct: 731 SGVGRVVPKGFPKSGKF 747 >gi|319784192|ref|YP_004143668.1| DNA topoisomerase IV subunit alpha [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317170080|gb|ADV13618.1| DNA topoisomerase IV, A subunit [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 750 Score = 978 bits (2527), Expect = 0.0, Method: Compositional matrix adjust. Identities = 453/736 (61%), Positives = 585/736 (79%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 ++++ V L+ ALEERYLAYALSTI RA+PD+RDG KPVHRRI+HAM + L+ F K Sbjct: 14 DHIEPVDLKKALEERYLAYALSTIMHRALPDVRDGLKPVHRRIMHAMRLLRLNPDQGFAK 73 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 ARIVGEV+GK HPHGDQS+YD+LVRLAQ F RYPL+ GQGNFGNIDGD+AAA RYTEA Sbjct: 74 CARIVGEVMGKFHPHGDQSIYDALVRLAQDFSMRYPLVDGQGNFGNIDGDNAAAMRYTEA 133 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 RMT VA +L G+ EDAVD+R TYNEED EPVV P FPNLLANG+SGIAVGMATSIP H Sbjct: 134 RMTDVATELLSGITEDAVDYRPTYNEEDEEPVVLPGAFPNLLANGSSGIAVGMATSIPPH 193 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 N E+C+AAL LI+N + + KL++++ GPDFPTGGIIV+SR SI+E+Y GRGGFRVR+ Sbjct: 194 NAAELCDAALHLIENRDAPVAKLMDFVQGPDFPTGGIIVDSRASILEAYETGRGGFRVRS 253 Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314 +W E+ GRG+W IVVTEIPY VQK+RLIEKIAEL++A+++PLLEDIRDESAEDVR+VL Sbjct: 254 KWFQEDQGRGTWSIVVTEIPYGVQKARLIEKIAELLMARKLPLLEDIRDESAEDVRVVLV 313 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 PK+RS+DP +LMES+F L+++E+RFPLNMNVLS G+VP V+ L G+L+EWL HRR+VL R Sbjct: 314 PKSRSVDPGILMESLFKLTELESRFPLNMNVLSRGKVPNVLSLKGVLQEWLEHRRDVLVR 373 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNL 434 RS R+ I+RR+EIL G LIAYLNIDE+I IIR ED+PK VM++R+SLT+ Q +AILN+ Sbjct: 374 RSKHRLGEIERRLEILAGYLIAYLNIDEVIRIIREEDEPKQVMMARWSLTDTQAEAILNM 433 Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494 RLR+LRKLEE++I+ E D L AEK++I++LL S ++QW I E+ +++ F T+LG+ Sbjct: 434 RLRALRKLEEFEIRKEFDGLSAEKKQIEALLASNEKQWATIKWEVTNIRDKFGPETELGK 493 Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIA 554 RRT F + D + AMIE+EP+TVV+S +GW+R++K H DLS L FKEGDSLK+A Sbjct: 494 RRTQFADAPEHDLTDIAHAMIEREPVTVVVSEKGWLRAMKGHLADLSTLTFKEGDSLKLA 553 Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614 HA TTD++L+ +T GK YT+ A L GRGHGE I++++D++++QDIVTAFV+D+ KL Sbjct: 554 FHAQTTDKVLVFTTGGKFYTIGADRLPGGRGHGEPIRIIVDMDNDQDIVTAFVHDAKRKL 613 Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFS 674 L+ S N FIV E E++ANTRKGK + V + ++ K + VTGDH+A+VGENRK+L+F+ Sbjct: 614 LLASHDANGFIVPEEEVVANTRKGKQVMNVKAPDEAKRCIPVTGDHLAIVGENRKMLVFA 673 Query: 675 IDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRG 734 + +IPEM RGKGVRLQ YKDGG+ D+ F + GL+W DSA R++ RS +L W+G R Sbjct: 674 LAEIPEMGRGKGVRLQKYKDGGLLDLKPFTLESGLSWQDSADRTFTRSREELAEWIGARA 733 Query: 735 GVGSLVPKGFPRSGKF 750 G +VPKGFPR+GKF Sbjct: 734 SAGRMVPKGFPRTGKF 749 >gi|49474341|ref|YP_032383.1| DNA topoisomerase IV subunit A [Bartonella quintana str. Toulouse] gi|49239845|emb|CAF26238.1| Topoisomerase IV subunit a [Bartonella quintana str. Toulouse] Length = 749 Score = 978 bits (2527), Expect = 0.0, Method: Compositional matrix adjust. Identities = 457/739 (61%), Positives = 592/739 (80%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 +E+++ + LRFAL+ERYLAYALSTI RA+PD+RDG KPVHRRI+HAM + L+ ++ Sbjct: 11 KEHIEPIELRFALQERYLAYALSTITHRALPDVRDGLKPVHRRIVHAMRLLKLNPEQSYA 70 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 K ARIVG+V+GK HPHGD S+YD+LVRLAQ F RYPL+ GQGNFGNIDGD+AAA RYTE Sbjct: 71 KCARIVGDVMGKFHPHGDASIYDALVRLAQSFAVRYPLVDGQGNFGNIDGDNAAAMRYTE 130 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 ARMT+VA L+L+G++E+A+DFR TYNEED EPVV P FPNLLANG+SGIAVGMATSIP Sbjct: 131 ARMTEVAALLLEGINENAIDFRLTYNEEDEEPVVLPGAFPNLLANGSSGIAVGMATSIPP 190 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN E+C+AAL LI +P+ + EKL ++++GPDFPTGGI+VE ++SI ESYR+GRG FR+R Sbjct: 191 HNAAELCDAALHLIAHPDANDEKLNQFVLGPDFPTGGILVEPKKSIEESYRIGRGFFRLR 250 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313 +RW E RGS+ I+VTEIPYQVQKSRLIEK AEL++A+R+P+LEDI DESAED+RIVL Sbjct: 251 SRWHQETGSRGSYVIIVTEIPYQVQKSRLIEKTAELLLARRLPMLEDIHDESAEDIRIVL 310 Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373 PKNR++DP+LLMES+F L+D E RFPLN+NVLS+G+VP V+ L L++WL HR++VL Sbjct: 311 VPKNRTVDPELLMESLFKLTDFEVRFPLNLNVLSLGKVPNVLSLRESLQQWLEHRQQVLI 370 Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILN 433 RRS++R+ ID R+EIL G LIAYLN+DE+I IIR ED+PK +++ F LTENQ +AILN Sbjct: 371 RRSTYRLNEIDCRLEILHGYLIAYLNLDEVIQIIREEDEPKKELINCFELTENQAEAILN 430 Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493 +RLRSL KLEE++I+ E D L A+KEK+ +LL S +QW I+ EIR+V++IF T LG Sbjct: 431 MRLRSLHKLEEFEIRKEFDALKADKEKLQNLLASSTKQWKMISEEIRKVRKIFGPETLLG 490 Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKI 553 +RRTTF E R + QAMIEKEP+T+VIS +GW+R+L+ H D AL FKEGD LK+ Sbjct: 491 KRRTTFEEAPRHAIDDIHQAMIEKEPVTIVISEKGWMRALRGHLSDYKALSFKEGDCLKL 550 Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613 A A TTD+I ++ST GK + + A +L GRGHGE I++L+D++ DI+TAFV++ K Sbjct: 551 AFPAFTTDKITMISTGGKFFCINANDLPGGRGHGEPIRILVDMDDEHDILTAFVHNVEEK 610 Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIF 673 LL++SS GN FIV +E+IANTRKGK + V +K+KL + V GDH+AV+GENRK+LIF Sbjct: 611 LLLISSYGNGFIVPATEVIANTRKGKQVMNVKFLDKVKLCIPVKGDHLAVIGENRKMLIF 670 Query: 674 SIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKR 733 +I+QIPEMSRGKGVRLQ YK+GG+ D F + EGL+W D+A RS+NR +DL+ W+G R Sbjct: 671 AIEQIPEMSRGKGVRLQRYKEGGVVDAKTFNLSEGLSWQDTAERSFNRQAHDLIEWMGTR 730 Query: 734 GGVGSLVPKGFPRSGKFLS 752 GVG +VPKGFP+SGKF++ Sbjct: 731 AGVGRMVPKGFPKSGKFIN 749 >gi|13476904|ref|NP_108473.1| DNA topoisomerase IV subunit A [Mesorhizobium loti MAFF303099] gi|14027665|dbj|BAB53934.1| DNA topoisomerase IV subunit A [Mesorhizobium loti MAFF303099] Length = 750 Score = 974 bits (2518), Expect = 0.0, Method: Compositional matrix adjust. Identities = 451/736 (61%), Positives = 584/736 (79%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 ++++ V L+ ALEERYLAYALSTI RA+PD+RDG KPVHRRI+HAM + L+ F K Sbjct: 14 DHIEPVDLKKALEERYLAYALSTIMHRALPDVRDGLKPVHRRIMHAMRLLRLNPDQGFAK 73 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 ARIVGEV+GK HPHGDQS+YD+LVRLAQ F RYPL+ GQGNFGNIDGD+AAA RYTEA Sbjct: 74 CARIVGEVMGKFHPHGDQSIYDALVRLAQDFSMRYPLVDGQGNFGNIDGDNAAAMRYTEA 133 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 RMT VA +L G+ EDAVD+R TYNEED EPVV P FPNLLANG+SGIAVGMATSIP H Sbjct: 134 RMTDVATELLAGITEDAVDYRPTYNEEDEEPVVLPGAFPNLLANGSSGIAVGMATSIPPH 193 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 N E+C+AAL LI++ + + KL++++ GPDFPTGGIIV+SR SI+E+Y GRGGFRVR+ Sbjct: 194 NAAELCDAALHLIEHRDAPVSKLMDFVQGPDFPTGGIIVDSRASILEAYETGRGGFRVRS 253 Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314 +W E+ GRG+W IVVTEIPY VQK+RLIEKIAEL++A+++PLLEDIRDESAED+R+VL Sbjct: 254 KWSQEDQGRGTWSIVVTEIPYGVQKARLIEKIAELLMARKLPLLEDIRDESAEDIRVVLV 313 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 PK+RS+DP +LMES+F L+++E+RFPLNMNVLS G+VP V+ L G+L+EWL HRR+VL R Sbjct: 314 PKSRSVDPGILMESLFKLTELESRFPLNMNVLSRGKVPNVLSLKGVLQEWLDHRRDVLIR 373 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNL 434 RS R+ I+RR+EIL G LIAYLNIDE+I IIR ED+PK VM++R+SLT+NQ +AILN+ Sbjct: 374 RSRHRLGEIERRLEILAGYLIAYLNIDEVIKIIREEDEPKQVMMARWSLTDNQAEAILNM 433 Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494 RLR+LRKLEE++I+ E D L AEK++I++LL S +QW+ I E+ +++ F T+LG+ Sbjct: 434 RLRALRKLEEFEIRKEFDGLSAEKKQIEALLASDAKQWSTIKWEVTNIRDKFGPETELGK 493 Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIA 554 RRT F + D + AMIE+EP+TVV+S +GW+R++K H DLS L FKEGDSLK+A Sbjct: 494 RRTQFADAPEHDLTDIAHAMIEREPVTVVVSEKGWLRAMKGHLADLSTLTFKEGDSLKLA 553 Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614 HA TTD++L+ +T GK YT+ A L GRGHGE I++++D++++QDIVTAFV+D KL Sbjct: 554 FHAQTTDKVLVFTTGGKFYTIGADRLPGGRGHGEPIRIIVDMDNDQDIVTAFVHDPKRKL 613 Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFS 674 L+ S N FIV E E++ANTRKGK + V + ++ K V + GDH+A+VGENRK+L+F+ Sbjct: 614 LLASYDANGFIVPEEEVVANTRKGKQVMNVKAPDEAKRCVPLIGDHLAIVGENRKMLVFA 673 Query: 675 IDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRG 734 + +IPEM RGKGVRLQ YKDGG+ D+ F + GL+W DSA R++ RS +L W+G R Sbjct: 674 LSEIPEMGRGKGVRLQKYKDGGLLDLKPFTLETGLSWQDSADRTFTRSREELAEWIGARA 733 Query: 735 GVGSLVPKGFPRSGKF 750 G +VPKGFPR+GKF Sbjct: 734 SAGRMVPKGFPRTGKF 749 >gi|260466877|ref|ZP_05813061.1| DNA topoisomerase IV, A subunit [Mesorhizobium opportunistum WSM2075] gi|259029379|gb|EEW30671.1| DNA topoisomerase IV, A subunit [Mesorhizobium opportunistum WSM2075] Length = 750 Score = 973 bits (2516), Expect = 0.0, Method: Compositional matrix adjust. Identities = 451/736 (61%), Positives = 582/736 (79%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 ++++ V L+ ALEERYLAYALSTI RA+PD+RDG KPVHRRI+HAM + L+ F K Sbjct: 14 DHIEPVDLKKALEERYLAYALSTIMHRALPDVRDGLKPVHRRIMHAMRLLRLNPDQGFAK 73 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 ARIVGEV+GK HPHGDQS+YD+LVRLAQ F RYPL+ GQGNFGNIDGD+AAA RYTEA Sbjct: 74 CARIVGEVMGKFHPHGDQSIYDALVRLAQDFSMRYPLVDGQGNFGNIDGDNAAAMRYTEA 133 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 RMT VA +L G+ EDAVD+R TYNEED EPVV P FPNLLANG+SGIAVGMATSIP H Sbjct: 134 RMTDVATELLAGITEDAVDYRPTYNEEDEEPVVLPGAFPNLLANGSSGIAVGMATSIPPH 193 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 N E+C+AAL LI++ + + KL++++ GPDFPTGGIIV+SR SI+E+Y GRGGFRVR+ Sbjct: 194 NAAELCDAALHLIEHRDAPVAKLMDFVQGPDFPTGGIIVDSRASILEAYETGRGGFRVRS 253 Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314 RW E+ GRG+W IVVTEIPY VQK+RLIEKIAEL++A+++PLLEDIRDESAED+R+VL Sbjct: 254 RWSQEDQGRGTWSIVVTEIPYGVQKARLIEKIAELLMARKLPLLEDIRDESAEDIRVVLV 313 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 PK+RS+DP +LMES+F L+++E+RFPLNMNVLS G+VP V+ L G+L+EWL HRR+VL R Sbjct: 314 PKSRSVDPGILMESLFKLTELESRFPLNMNVLSRGKVPNVLSLKGVLQEWLDHRRDVLVR 373 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNL 434 RS R+ I+RR+EIL G LIAYLNIDE+I IIR ED+PK VM++R+SLT+ Q +AILN+ Sbjct: 374 RSKHRLGEIERRLEILAGYLIAYLNIDEVIKIIREEDEPKQVMMARWSLTDTQAEAILNM 433 Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494 RLR+LRKLEE++I+ E D L EK++I++LL S +QW+ I E+ +++ F T+LG+ Sbjct: 434 RLRALRKLEEFEIRKEFDGLTTEKKQIEALLASDAKQWSTIKWEVTSIRDKFGPETELGK 493 Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIA 554 RRT F + D + AMIE+EP+TVV+S +GW+R++K H DLS L FKEGDSLK+A Sbjct: 494 RRTQFADAPEHDLTDIAHAMIEREPVTVVVSEKGWLRAMKGHLADLSTLTFKEGDSLKLA 553 Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614 HA TTD++L+ +T GK YT+ A L GRGHGE I++++D++++QDIVTAFV+D KL Sbjct: 554 FHAQTTDKVLVFTTGGKFYTIGADRLPGGRGHGEPIRIIVDMDNDQDIVTAFVHDPKRKL 613 Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFS 674 L+ S N FIV E E++ANTRKGK + V + ++ K V +TGDH+A+VGENRK+L+F+ Sbjct: 614 LLASYDANGFIVPEEEVVANTRKGKQVMNVKAPDEAKRCVPLTGDHLAIVGENRKMLVFA 673 Query: 675 IDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRG 734 + IPEM RGKGVRLQ YKDGG+ D+ F + GL+W DSA R++ RS +L W+G R Sbjct: 674 LSDIPEMGRGKGVRLQKYKDGGLLDLKPFTLETGLSWQDSADRTFTRSREELAEWIGARA 733 Query: 735 GVGSLVPKGFPRSGKF 750 G +VPKGFPR+GKF Sbjct: 734 SAGRMVPKGFPRTGKF 749 >gi|121602784|ref|YP_989154.1| DNA topoisomerase IV subunit A [Bartonella bacilliformis KC583] gi|120614961|gb|ABM45562.1| DNA topoisomerase IV, A subunit [Bartonella bacilliformis KC583] Length = 745 Score = 971 bits (2511), Expect = 0.0, Method: Compositional matrix adjust. Identities = 452/742 (60%), Positives = 594/742 (80%) Query: 9 SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68 S+ + EE+++ + LR AL+ERYLAYALSTI RA+PD+RDG KPVHRRIIHAM + L+ Sbjct: 2 SDKIDEEHIEPIELRSALQERYLAYALSTITHRALPDVRDGLKPVHRRIIHAMRLLKLNP 61 Query: 69 GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128 ++ K ARIVG+V+GK HPHGD S+YD+LVRLAQ F RYPLI GQGNFGNIDGD+AAA Sbjct: 62 AQSYAKCARIVGDVMGKFHPHGDASIYDALVRLAQDFAVRYPLIDGQGNFGNIDGDNAAA 121 Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188 RYTEARMT+VAEL+L+G++E+A+DFR TYNEED EP+V P FPNLLANG+SGIAVGMA Sbjct: 122 MRYTEARMTEVAELLLEGINENAIDFRLTYNEEDEEPIVLPGAFPNLLANGSSGIAVGMA 181 Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248 TSIP HNV E+C+AAL LI + + S E L ++++GPDFPTGGI+VE ++SI E+YR GRG Sbjct: 182 TSIPPHNVAELCDAALHLIAHSDASHEDLNQFVLGPDFPTGGILVEPKKSIEEAYRTGRG 241 Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308 FR+R+RW E R S+ IV+TEIPYQ+QKSRL+EK AEL++A+R+P+LEDI+DESAED Sbjct: 242 SFRLRSRWHQETGNRNSYVIVITEIPYQIQKSRLVEKTAELLLARRLPMLEDIQDESAED 301 Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368 VRIVL PKNR++DP+LLMES+F L+D E RFPLN+NVL++G+ P V+ L L++WL HR Sbjct: 302 VRIVLTPKNRTVDPELLMESLFKLTDFEVRFPLNLNVLTLGKTPNVLSLRESLQQWLEHR 361 Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQV 428 +EVL RRS+ R+ I+ R+EIL G LIAYLN+D++I IIR ED+PK +++ F LTENQ Sbjct: 362 QEVLIRRSNHRLGQINSRLEILHGYLIAYLNLDKVIQIIREEDEPKKELLTHFQLTENQA 421 Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488 +AILN+RLRSLRKLEE++I+ E +NL AE+EK+ +LL S +QW I+ EI++V++ F+ Sbjct: 422 EAILNMRLRSLRKLEEFEIRKEFENLKAEEEKLQALLGSNVKQWQMISEEIKKVRKKFAP 481 Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548 T LG+RRTTF + + D + QAMIEKEP+T+VIS +GW+R+LK H D AL FKEG Sbjct: 482 ETSLGKRRTTFEDSPKRDVDDIYQAMIEKEPVTIVISEKGWMRALKGHLNDYKALSFKEG 541 Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608 D LK+A A TTD+I+++ST GK +T+ A L GRGHGE I++L+D+++ DI+TAFV+ Sbjct: 542 DCLKLAFPAFTTDKIVVVSTGGKFFTIGANTLPGGRGHGEPIRILVDMDNEHDILTAFVH 601 Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENR 668 ++ KLL+VSS GN FI+ E+E+IANTRKGK + V S +K+KL + V GDH+AV+GENR Sbjct: 602 NAQGKLLLVSSYGNGFIISETEVIANTRKGKQIMNVKSPDKVKLCIPVKGDHIAVIGENR 661 Query: 669 KLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLG 728 K+LIF I+QIPE+SRGKGVRLQ YKDG + D F + EGL+W D+A RS+NR ++L+ Sbjct: 662 KMLIFPIEQIPEISRGKGVRLQRYKDGVVVDAKTFNLSEGLSWQDTAERSFNRQADELIE 721 Query: 729 WLGKRGGVGSLVPKGFPRSGKF 750 W+G R G G L+P+GFP+SGKF Sbjct: 722 WMGTRAGAGRLLPRGFPKSGKF 743 >gi|319405615|emb|CBI79238.1| topoisomerase IV subunit A [Bartonella sp. AR 15-3] Length = 749 Score = 971 bits (2511), Expect = 0.0, Method: Compositional matrix adjust. Identities = 458/737 (62%), Positives = 587/737 (79%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 +E+++++ LR AL+ERYLAYALSTI RA+PD+RDG KPVHRRI+HAM + L+ G + Sbjct: 11 KEHIESIELRSALQERYLAYALSTITHRALPDVRDGLKPVHRRIVHAMRLLKLNPGQPYA 70 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 K ARIVG+V+GK HPHGD S+YD+LVRLAQ F RYPLI GQGNFGNIDGD+AAA RYTE Sbjct: 71 KCARIVGDVMGKFHPHGDASIYDALVRLAQSFSVRYPLIDGQGNFGNIDGDNAAAMRYTE 130 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 ARMT+VA L+L+G++E+A+DFR TYNEED EPVV P FPNLLANG+SGIAVGMATSIP Sbjct: 131 ARMTEVAILLLEGINENAIDFRLTYNEEDKEPVVLPGAFPNLLANGSSGIAVGMATSIPP 190 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HNV E+C+AAL LI NP E L ++++GPDFPTGGI+VE ++SI +SYR GRG FR+R Sbjct: 191 HNVAELCDAALYLIANPHADHEDLNQFVLGPDFPTGGILVEPKKSIEDSYRTGRGLFRLR 250 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313 +RW EE RGS+ IVVTEIPYQ+QKSRLIEK AEL++A+R+P+LEDI DESAED+RIVL Sbjct: 251 SRWHQEEGNRGSYVIVVTEIPYQIQKSRLIEKTAELLLARRLPMLEDIHDESAEDIRIVL 310 Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373 PKNR++DP+LLMES+F L+D E RFPLN+NVL++G+VP ++ L L++WL HR+EVL Sbjct: 311 VPKNRTIDPELLMESLFKLTDFEVRFPLNLNVLTLGKVPNLLSLRESLQQWLQHRKEVLI 370 Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILN 433 RRS +R+ ID R+EIL+G LIAYLN+DE++ IIR D+PK ++ RF LTENQ ++ILN Sbjct: 371 RRSDYRLNEIDCRLEILQGYLIAYLNLDEVLQIIRESDEPKKELILRFKLTENQAESILN 430 Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493 +RLRSLRKLEE+QI+ E ++L EKEK+ +LL S +QW IA EI V++IF T LG Sbjct: 431 MRLRSLRKLEEFQIRKEFESLKIEKEKLQNLLASNIKQWKIIAEEITRVRKIFGPETFLG 490 Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKI 553 +RRTTF E R D + QAMIEKEP+T+VIS +GW+R+LK H D L FKEGD LK+ Sbjct: 491 KRRTTFEEAPRHDVNDIHQAMIEKEPVTIVISEKGWMRALKGHLNDYKTLSFKEGDCLKL 550 Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613 A A TTD+I+++ST GK +T+ A L GRGHGE I++L+D+++ +I+TAFV+++ K Sbjct: 551 AFSAFTTDKIIVISTGGKFFTISANILPGGRGHGEPIRILVDMDNEHNILTAFVHNTQRK 610 Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIF 673 L++SS GN FIV ES+IIANTRKGK + V S + +KL + V GD++A+VGENRK+LIF Sbjct: 611 RLLISSYGNGFIVSESDIIANTRKGKQVMNVKSPDSLKLCIPVEGDYIAIVGENRKMLIF 670 Query: 674 SIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKR 733 SI+QIPEMSRGKGVRLQ YKD + DV F + EGL+W D+A RS+NR ++L+ W+G R Sbjct: 671 SIEQIPEMSRGKGVRLQRYKDSVVVDVKTFTLSEGLSWQDTAERSFNRRADELVEWMGTR 730 Query: 734 GGVGSLVPKGFPRSGKF 750 G G LVPKGFP+SGKF Sbjct: 731 AGAGRLVPKGFPKSGKF 747 >gi|319408644|emb|CBI82299.1| topoisomerase IV subunit A [Bartonella schoenbuchensis R1] Length = 749 Score = 970 bits (2507), Expect = 0.0, Method: Compositional matrix adjust. Identities = 458/746 (61%), Positives = 593/746 (79%) Query: 5 NISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEM 64 ++ S +E ++ V L AL+ERYLAYALSTI RA+PD+RDG KPVHRRIIHAM + Sbjct: 2 SVKMSQPFDKECIEPVELCSALQERYLAYALSTITHRALPDVRDGLKPVHRRIIHAMRLL 61 Query: 65 GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124 L+ G ++ K ARIVG+V+GK HPHGD S+YD+LVRLAQ F RYPL+ GQGNFGNIDGD Sbjct: 62 KLNPGQSYAKCARIVGDVMGKFHPHGDASIYDALVRLAQDFAVRYPLVDGQGNFGNIDGD 121 Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184 +AAA RYTEARMT+VA L+L+G++ED++DFR TYNEED EPVV P FPNLLANG+SGIA Sbjct: 122 NAAAMRYTEARMTEVAALLLEGINEDSIDFRLTYNEEDEEPVVLPGAFPNLLANGSSGIA 181 Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244 VGMATSIP HNV E+C+AAL LI +P + E L ++++GPDFPTGGI+VE ++SI ESYR Sbjct: 182 VGMATSIPPHNVAELCDAALHLIAHPNANNEDLNKFVLGPDFPTGGILVEPKKSIEESYR 241 Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304 GRG FR+R+RW E+ RGS+ IVVTEIPYQVQKSRLIEK AEL++A+R+P+LEDI DE Sbjct: 242 TGRGLFRLRSRWHQEQSSRGSYVIVVTEIPYQVQKSRLIEKTAELLLARRLPMLEDIHDE 301 Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364 SAED+RIVL PKNR++D +LLMES+F L+D E RFPLN+NVL++G+VP V+ L L++W Sbjct: 302 SAEDIRIVLVPKNRTVDAELLMESLFKLTDFEVRFPLNLNVLTLGKVPNVLSLRESLQQW 361 Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLT 424 L HR+EVL RRSS+R+ I+RR+EIL G LIAYLN+D++I I+R ED+PK ++ F LT Sbjct: 362 LEHRKEVLVRRSSYRLNEINRRLEILNGYLIAYLNLDKVIQILREEDEPKKELIEHFKLT 421 Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484 +NQ +AILN+RLRSLRKLEE++I+ E ++L E+ ++ +LL S +QW I+ EI +V++ Sbjct: 422 DNQAEAILNMRLRSLRKLEEFEIRKEFESLKTEEAQLQALLASNIKQWKMISDEITKVRK 481 Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH 544 IF T LG+RRTTF + + D +QQAMIE+EP+T++IS +GW+R+LK H D L Sbjct: 482 IFGPETILGKRRTTFEDAPKHDVNDIQQAMIEREPVTIIISEKGWMRALKGHLNDYKMLS 541 Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVT 604 FKEGD LK+AL A TTD+I+++ST GK +T+ A L GRGHGE I++L+D++ DI+T Sbjct: 542 FKEGDCLKLALPAFTTDKIVVVSTGGKFFTIGANVLPGGRGHGEPIRILVDMDGEHDILT 601 Query: 605 AFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVV 664 AFV+++ K L+VS+ GN FIV E+E+IANTRKGK + V S +K+KL V V GD+VAVV Sbjct: 602 AFVHNAQEKRLLVSAYGNGFIVSENEVIANTRKGKQIMHVKSPDKVKLCVPVNGDYVAVV 661 Query: 665 GENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSEN 724 GENRKLLIF+I+QIPEMSRGKGVRLQ YKDGG+ D F + EGL+W D+A RS+NR + Sbjct: 662 GENRKLLIFAIEQIPEMSRGKGVRLQRYKDGGVVDAKTFNLSEGLSWQDTAERSFNRQSD 721 Query: 725 DLLGWLGKRGGVGSLVPKGFPRSGKF 750 +L+ W+G R GVG LVPKGFP+SGKF Sbjct: 722 ELIEWMGTRAGVGRLVPKGFPKSGKF 747 >gi|319898853|ref|YP_004158946.1| topoisomerase IV subunit A [Bartonella clarridgeiae 73] gi|319402817|emb|CBI76368.1| topoisomerase IV subunit A [Bartonella clarridgeiae 73] Length = 749 Score = 969 bits (2506), Expect = 0.0, Method: Compositional matrix adjust. Identities = 459/739 (62%), Positives = 585/739 (79%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 +E+++ + LR AL+ERYLAYALSTI RA+PD+RDG KPVHRRIIHAM + L+ G A+ Sbjct: 11 KEHIEPIELRSALQERYLAYALSTITHRALPDVRDGLKPVHRRIIHAMRLLRLNPGKAYT 70 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 K ARIVG+V+GKLHPHGD S+YD+LVRLAQ F RYPLI GQGNFGNIDGD+AAA RYTE Sbjct: 71 KCARIVGDVMGKLHPHGDVSIYDALVRLAQSFAVRYPLIDGQGNFGNIDGDNAAAMRYTE 130 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 ARMT+VA L+L+G++E+A+DFR TYNEED EP+V P FPNLLANG+SGIAVGMATSIP Sbjct: 131 ARMTEVAILLLEGINENAIDFRLTYNEEDEEPIVLPGAFPNLLANGSSGIAVGMATSIPP 190 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HNV E+C+AAL LI NP + L ++++GPDFPTGGI+VE ++SI +SYR GRG FR+R Sbjct: 191 HNVAELCDAALYLIANPHADHKDLNQFVLGPDFPTGGILVEPKKSIEDSYRTGRGLFRLR 250 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313 +RW EE RGS+ IVVTEIPYQ+QKSRLIEK AEL++A+R+P+LEDI DESAED+RIVL Sbjct: 251 SRWHQEEGNRGSYVIVVTEIPYQIQKSRLIEKTAELLLARRLPMLEDIHDESAEDIRIVL 310 Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373 PKNR++DP+LLMES+F L+D E RFPLN+NVL++G+VP V+ L L++WL HR+EVL Sbjct: 311 VPKNRTIDPELLMESLFKLTDFEVRFPLNLNVLTLGKVPNVLSLRESLQQWLQHRKEVLI 370 Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILN 433 RRS++R+ ID R+EIL+G LIAYLN+DE++ IIR D+PK ++ F LTENQ ++ILN Sbjct: 371 RRSNYRLNEIDCRLEILQGYLIAYLNLDELVQIIRENDEPKKELIVCFKLTENQAESILN 430 Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493 +RLRSLRKLEE++I+ E D+L EKEK+ +LL S +QW IA EI V++ F T LG Sbjct: 431 MRLRSLRKLEEFEIRKEFDSLKIEKEKLQNLLASNIKQWKIIAEEITRVRKSFGPDTFLG 490 Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKI 553 +RRTTF + R D + QAMIEKEP+T+VIS +GW+R+LK H D L FKEGD LK+ Sbjct: 491 KRRTTFEDAPRHDVNDIHQAMIEKEPVTIVISEKGWMRALKGHLNDYKTLSFKEGDCLKL 550 Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613 A A TTD+I+++ST GK +T+ A L GRGHGE I++L+D++ DI+TAFVY+ K Sbjct: 551 AFPAFTTDKIIVISTGGKFFTISANTLPGGRGHGEPIRILVDMDKEHDILTAFVYNMEGK 610 Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIF 673 L++SS GN FIV E +IIANTRKGK + + S + +KL + V GD++AVVGENRK+LIF Sbjct: 611 RLLISSYGNGFIVSEIDIIANTRKGKQVMNIKSPDSLKLCIPVKGDYIAVVGENRKMLIF 670 Query: 674 SIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKR 733 SI+QIPEMSRGKGVRLQ YKDGG+ D F + EGL+W D+A RS+NR ++L+ W+G R Sbjct: 671 SIEQIPEMSRGKGVRLQRYKDGGVVDAKTFTLSEGLSWQDTAERSFNRQADELVEWMGTR 730 Query: 734 GGVGSLVPKGFPRSGKFLS 752 G G VPKGFP+SGKF S Sbjct: 731 AGAGRFVPKGFPKSGKFSS 749 >gi|306843699|ref|ZP_07476299.1| DNA topoisomerase IV, A subunit [Brucella sp. BO1] gi|306276009|gb|EFM57718.1| DNA topoisomerase IV, A subunit [Brucella sp. BO1] Length = 770 Score = 956 bits (2470), Expect = 0.0, Method: Compositional matrix adjust. Identities = 456/759 (60%), Positives = 588/759 (77%), Gaps = 22/759 (2%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 EE+++ V L+ ALEERYLAYALSTI RA+PD+RDG KPVHRRI+HAM + L+ A+ Sbjct: 12 EEHIERVDLKSALEERYLAYALSTIMHRALPDVRDGLKPVHRRIMHAMRLLRLNPDQAYA 71 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 K ARIVG+V+GK HPHGD S+YD+LVRLAQ F RYPL+ GQGNFGNIDGD+AAA RYTE Sbjct: 72 KCARIVGDVMGKFHPHGDASIYDALVRLAQDFAVRYPLVDGQGNFGNIDGDNAAAMRYTE 131 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 ARMT+VA L+L+G++E+A+DFR TYNEED EP+V P FPNLLANG++GIAVGMAT+IP Sbjct: 132 ARMTEVATLLLEGINENAIDFRPTYNEEDEEPIVLPGAFPNLLANGSAGIAVGMATNIPP 191 Query: 194 HNVQEICEAALALIDNPEISIEKLLEY----------------------IIGPDFPTGGI 231 HNV E+C +AL LI++P+ +E+L+ + GPDFPTGGI Sbjct: 192 HNVAELCSSALYLINHPDAPVEELVTSPEQWAEIEQESKTDPAALLKCKVRGPDFPTGGI 251 Query: 232 IVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELII 291 +VE +I+E+YR GRG FRVRARW EE RG+W IVVTEIPYQVQKSRLIEKIAEL++ Sbjct: 252 LVEEHGNILEAYRTGRGAFRVRARWHKEEGNRGTWVIVVTEIPYQVQKSRLIEKIAELLL 311 Query: 292 AKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRV 351 AK++PLL+DIRDESAED+RIVL PKNR++DP+LLMES+F L+++E+R LNMNVLS G+V Sbjct: 312 AKKLPLLDDIRDESAEDIRIVLEPKNRTVDPELLMESLFKLTELESRVSLNMNVLSHGKV 371 Query: 352 PQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED 411 P V+ L +L+EWL HR+EVL RRS FR+ I+RR+EIL G LIAYLN+DE+I IIR ED Sbjct: 372 PNVLSLGAVLREWLEHRKEVLVRRSQFRLAEIERRLEILGGFLIAYLNLDEVIRIIREED 431 Query: 412 KPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQ 471 +PK ++ F LT+ Q ++ILN+RLRSLRKLEE++I+ E D+L AEK ++ LL SG +Q Sbjct: 432 EPKQELMRAFELTDVQAESILNMRLRSLRKLEEFEIRKEFDDLTAEKTDLEGLLASGTRQ 491 Query: 472 WNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR 531 W +I+ EI+ V+E F +T LG+RRTTF D + QAMIE+EP+T+V+S +GW+R Sbjct: 492 WKKISAEIKAVREKFGPTTRLGKRRTTFAHAPMHDLEDIHQAMIEREPVTIVVSEKGWLR 551 Query: 532 SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ 591 ++K H D S L FKEGD LK+A HA TTD++L +T GK +T+ A L GRGHGE I+ Sbjct: 552 AMKGHLADFSTLSFKEGDKLKLAFHAETTDKLLFFTTGGKFFTIGANTLPGGRGHGEPIR 611 Query: 592 LLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK 651 +L+D+ ++QDI+TAFV+D + KLL+VS +GN FIV ESE +ANTRKGK + V + ++ K Sbjct: 612 ILVDMENDQDILTAFVHDPSAKLLLVSHEGNGFIVPESEAVANTRKGKQVMNVKTPDEAK 671 Query: 652 LVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTW 711 L +V+GDH+AVVGENRK+L+F + IPEM+RGKGVRLQ YKDGG+ DV F I +GL+W Sbjct: 672 LCQRVSGDHIAVVGENRKMLVFPLSDIPEMTRGKGVRLQKYKDGGVCDVRTFAIADGLSW 731 Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750 DSA R++NRS+ +L+ W+G R G LVPKGFPRSGKF Sbjct: 732 QDSADRTFNRSKEELVEWIGARASAGRLVPKGFPRSGKF 770 >gi|306841998|ref|ZP_07474672.1| DNA topoisomerase IV, A subunit [Brucella sp. BO2] gi|306287926|gb|EFM59343.1| DNA topoisomerase IV, A subunit [Brucella sp. BO2] Length = 770 Score = 955 bits (2469), Expect = 0.0, Method: Compositional matrix adjust. Identities = 456/759 (60%), Positives = 588/759 (77%), Gaps = 22/759 (2%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 EE+++ V L+ ALEERYLAYALSTI RA+PD+RDG KPVHRRI+HAM + L+ A+ Sbjct: 12 EEHIERVDLKSALEERYLAYALSTIMHRALPDVRDGLKPVHRRIMHAMRLLRLNPDQAYA 71 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 K ARIVG+V+GK HPHGD S+YD+LVRLAQ F RYPL+ GQGNFGNIDGD+AAA RYTE Sbjct: 72 KCARIVGDVMGKFHPHGDASIYDALVRLAQDFAVRYPLVDGQGNFGNIDGDNAAAMRYTE 131 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 ARMT+VA L+L+G++E+A+DFR TYNEED EP+V P FPNLLANG++GIAVGMAT+IP Sbjct: 132 ARMTEVATLLLEGINENAIDFRPTYNEEDEEPIVLPGAFPNLLANGSAGIAVGMATNIPP 191 Query: 194 HNVQEICEAALALIDNPEISIEKLLEY----------------------IIGPDFPTGGI 231 HNV E+C +AL LI++P+ +E+L+ + GPDFPTGGI Sbjct: 192 HNVAELCSSALYLINHPDAPVEELVTSPEQWAEIEQESKTDPAALLKCKVRGPDFPTGGI 251 Query: 232 IVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELII 291 +VE +I+E+YR GRG FRVRARW EE RG+W IVVTEIPYQVQKSRLIEKIAEL++ Sbjct: 252 LVEEHGNILEAYRTGRGAFRVRARWHKEEGNRGTWVIVVTEIPYQVQKSRLIEKIAELLL 311 Query: 292 AKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRV 351 AK++PLL+DIRDESAED+RIVL PKNR++DP+LLMES+F L+++E+R LNMNVLS G+V Sbjct: 312 AKKLPLLDDIRDESAEDIRIVLEPKNRTVDPELLMESLFKLTELESRVSLNMNVLSHGKV 371 Query: 352 PQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED 411 P V+ L +L+EWL HR+EVL RRS FR+ I+RR+EIL G LIAYLN+DE+I IIR ED Sbjct: 372 PNVLSLGAVLREWLEHRKEVLVRRSQFRLAEIERRLEILGGFLIAYLNLDEVIRIIREED 431 Query: 412 KPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQ 471 +PK ++ F LT+ Q ++ILN+RLRSLRKLEE++I+ E D+L AEK ++ LL SG +Q Sbjct: 432 EPKQELMRAFELTDVQAESILNMRLRSLRKLEEFEIRKEFDDLTAEKTDLEGLLASGTRQ 491 Query: 472 WNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR 531 W +I+ EI+ V+E F +T LG+RRTTF D + QAMIE+EP+T+V+S +GW+R Sbjct: 492 WKKISAEIKAVREKFGPTTRLGKRRTTFAHAPMHDLEDIHQAMIEREPVTIVVSEKGWLR 551 Query: 532 SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ 591 ++K H D S L FKEGD LK+A HA TTD++L +T GK +T+ A L GRGHGE I+ Sbjct: 552 AMKGHLADFSTLSFKEGDKLKLAFHAETTDKLLFFTTGGKFFTIGANTLPGGRGHGEPIR 611 Query: 592 LLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK 651 +L+D+ ++QDI+TAFV+D + KLL+VS +GN FIV ESE +ANTRKGK + V + ++ K Sbjct: 612 ILVDMENDQDILTAFVHDPSAKLLLVSHEGNGFIVPESEAVANTRKGKQVMNVKAPDEAK 671 Query: 652 LVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTW 711 L +V+GDH+AVVGENRK+L+F + IPEM+RGKGVRLQ YKDGG+ DV F I +GL+W Sbjct: 672 LCQRVSGDHIAVVGENRKMLVFPLSDIPEMTRGKGVRLQKYKDGGVCDVRTFAIADGLSW 731 Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750 DSA R++NRS+ +L+ W+G R G LVPKGFPRSGKF Sbjct: 732 QDSADRTFNRSKEELVEWIGARASAGRLVPKGFPRSGKF 770 >gi|23501641|ref|NP_697768.1| DNA topoisomerase IV subunit A [Brucella suis 1330] gi|161618723|ref|YP_001592610.1| DNA topoisomerase IV subunit A [Brucella canis ATCC 23365] gi|163843026|ref|YP_001627430.1| DNA topoisomerase IV subunit A [Brucella suis ATCC 23445] gi|225852271|ref|YP_002732504.1| DNA topoisomerase IV subunit A [Brucella melitensis ATCC 23457] gi|254693501|ref|ZP_05155329.1| DNA topoisomerase IV subunit A [Brucella abortus bv. 3 str. Tulya] gi|254701530|ref|ZP_05163358.1| DNA topoisomerase IV subunit A [Brucella suis bv. 5 str. 513] gi|254704079|ref|ZP_05165907.1| DNA topoisomerase IV subunit A [Brucella suis bv. 3 str. 686] gi|254713872|ref|ZP_05175683.1| DNA topoisomerase IV subunit A [Brucella ceti M644/93/1] gi|254717071|ref|ZP_05178882.1| DNA topoisomerase IV subunit A [Brucella ceti M13/05/1] gi|256044443|ref|ZP_05447347.1| DNA topoisomerase IV subunit A [Brucella melitensis bv. 1 str. Rev.1] gi|256113287|ref|ZP_05454155.1| DNA topoisomerase IV subunit A [Brucella melitensis bv. 3 str. Ether] gi|256159485|ref|ZP_05457253.1| DNA topoisomerase IV subunit A [Brucella ceti M490/95/1] gi|256254771|ref|ZP_05460307.1| DNA topoisomerase IV subunit A [Brucella ceti B1/94] gi|256264222|ref|ZP_05466754.1| DNA topoisomerase IV subunit A [Brucella melitensis bv. 2 str. 63/9] gi|256369187|ref|YP_003106695.1| DNA topoisomerase IV subunit A [Brucella microti CCM 4915] gi|260168497|ref|ZP_05755308.1| DNA topoisomerase IV subunit A [Brucella sp. F5/99] gi|260563794|ref|ZP_05834280.1| DNA topoisomerase IV subunit A [Brucella melitensis bv. 1 str. 16M] gi|260566673|ref|ZP_05837143.1| DNA topoisomerase IV subunit A [Brucella suis bv. 4 str. 40] gi|261213760|ref|ZP_05928041.1| DNA topoisomerase IV subunit A [Brucella abortus bv. 3 str. Tulya] gi|261218881|ref|ZP_05933162.1| DNA topoisomerase IV subunit A [Brucella ceti M13/05/1] gi|261221951|ref|ZP_05936232.1| DNA topoisomerase IV subunit A [Brucella ceti B1/94] gi|261321620|ref|ZP_05960817.1| DNA topoisomerase IV subunit A [Brucella ceti M644/93/1] gi|261752079|ref|ZP_05995788.1| DNA topoisomerase IV subunit A [Brucella suis bv. 5 str. 513] gi|261754738|ref|ZP_05998447.1| DNA topoisomerase IV subunit A [Brucella suis bv. 3 str. 686] gi|261757966|ref|ZP_06001675.1| DNA topoisomerase IV subunit A [Brucella sp. F5/99] gi|265990864|ref|ZP_06103421.1| DNA topoisomerase IV subunit A [Brucella melitensis bv. 1 str. Rev.1] gi|265994700|ref|ZP_06107257.1| DNA topoisomerase IV subunit A [Brucella melitensis bv. 3 str. Ether] gi|265997914|ref|ZP_06110471.1| DNA topoisomerase IV subunit A [Brucella ceti M490/95/1] gi|294852118|ref|ZP_06792791.1| DNA topoisomerase IV [Brucella sp. NVSL 07-0026] gi|23347560|gb|AAN29683.1| DNA topoisomerase IV, A subunit [Brucella suis 1330] gi|161335534|gb|ABX61839.1| DNA topoisomerase IV, A subunit [Brucella canis ATCC 23365] gi|163673749|gb|ABY37860.1| DNA topoisomerase IV, A subunit [Brucella suis ATCC 23445] gi|225640636|gb|ACO00550.1| DNA topoisomerase IV, A subunit [Brucella melitensis ATCC 23457] gi|255999347|gb|ACU47746.1| DNA topoisomerase IV subunit A [Brucella microti CCM 4915] gi|260153810|gb|EEW88902.1| DNA topoisomerase IV subunit A [Brucella melitensis bv. 1 str. 16M] gi|260156191|gb|EEW91271.1| DNA topoisomerase IV subunit A [Brucella suis bv. 4 str. 40] gi|260915367|gb|EEX82228.1| DNA topoisomerase IV subunit A [Brucella abortus bv. 3 str. Tulya] gi|260920535|gb|EEX87188.1| DNA topoisomerase IV subunit A [Brucella ceti B1/94] gi|260923970|gb|EEX90538.1| DNA topoisomerase IV subunit A [Brucella ceti M13/05/1] gi|261294310|gb|EEX97806.1| DNA topoisomerase IV subunit A [Brucella ceti M644/93/1] gi|261737950|gb|EEY25946.1| DNA topoisomerase IV subunit A [Brucella sp. F5/99] gi|261741832|gb|EEY29758.1| DNA topoisomerase IV subunit A [Brucella suis bv. 5 str. 513] gi|261744491|gb|EEY32417.1| DNA topoisomerase IV subunit A [Brucella suis bv. 3 str. 686] gi|262552382|gb|EEZ08372.1| DNA topoisomerase IV subunit A [Brucella ceti M490/95/1] gi|262765813|gb|EEZ11602.1| DNA topoisomerase IV subunit A [Brucella melitensis bv. 3 str. Ether] gi|263001648|gb|EEZ14223.1| DNA topoisomerase IV subunit A [Brucella melitensis bv. 1 str. Rev.1] gi|263094467|gb|EEZ18289.1| DNA topoisomerase IV subunit A [Brucella melitensis bv. 2 str. 63/9] gi|294820707|gb|EFG37706.1| DNA topoisomerase IV [Brucella sp. NVSL 07-0026] gi|326408776|gb|ADZ65841.1| DNA topoisomerase IV subunit A [Brucella melitensis M28] gi|326538494|gb|ADZ86709.1| DNA topoisomerase IV, A subunit [Brucella melitensis M5-90] Length = 770 Score = 954 bits (2467), Expect = 0.0, Method: Compositional matrix adjust. Identities = 455/759 (59%), Positives = 588/759 (77%), Gaps = 22/759 (2%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 EE+++ V L+ ALEERYLAYALSTI RA+PD+RDG KPVHRRI+HAM + L+ A+ Sbjct: 12 EEHIERVDLKSALEERYLAYALSTIMHRALPDVRDGLKPVHRRIMHAMRLLRLNPDQAYA 71 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 K ARIVG+V+GK HPHGD S+YD+LVRLAQ F RYPL+ GQGNFGNIDGD+AAA RYTE Sbjct: 72 KCARIVGDVMGKFHPHGDASIYDALVRLAQDFAVRYPLVDGQGNFGNIDGDNAAAMRYTE 131 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 ARMT+VA L+L+G++E+A+DFR TYNEED EP+V P FPNLLANG++GIAVGMAT+IP Sbjct: 132 ARMTEVATLLLEGINENAIDFRPTYNEEDEEPIVLPGAFPNLLANGSAGIAVGMATNIPP 191 Query: 194 HNVQEICEAALALIDNPEISIEKLLEY----------------------IIGPDFPTGGI 231 HNV E+C +AL LI++P+ +E+L+ + GPDFPTGGI Sbjct: 192 HNVAELCSSALYLINHPDAPVEELVTSPEQWAEIEQESKTDPAALLKCKVRGPDFPTGGI 251 Query: 232 IVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELII 291 +VE +I+E+YR GRG FRVRARW EE RG+W IVVTEIPYQVQKSRLIEKIAEL++ Sbjct: 252 LVEEHGNILEAYRTGRGAFRVRARWHKEEGNRGTWVIVVTEIPYQVQKSRLIEKIAELLL 311 Query: 292 AKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRV 351 AK++PLL+DIRDESAED+RIVL PKNR++DP+LLMES+F L+++E+R LNMNVLS G+V Sbjct: 312 AKKLPLLDDIRDESAEDIRIVLEPKNRTVDPELLMESLFKLTELESRVSLNMNVLSHGKV 371 Query: 352 PQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED 411 P V+ L +L+EWL HR+EVL RRS FR+ I++R+EIL G LIAYLN+DE+I IIR ED Sbjct: 372 PNVLSLGAVLREWLEHRKEVLVRRSQFRLAEIEKRLEILGGFLIAYLNLDEVIRIIREED 431 Query: 412 KPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQ 471 +PK ++ F LT+ Q ++ILN+RLRSLRKLEE++I+ E D+L AEK ++ LL SG +Q Sbjct: 432 EPKQELMRAFELTDVQAESILNMRLRSLRKLEEFEIRKEFDDLTAEKTDLEGLLASGTRQ 491 Query: 472 WNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR 531 W +I+ EI+ V+E F +T LG+RRTTF D + QAMIE+EP+T+V+S +GW+R Sbjct: 492 WKKISTEIKAVREKFGPTTRLGKRRTTFAHAPTHDLEDIHQAMIEREPVTIVVSEKGWLR 551 Query: 532 SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ 591 ++K H D S L FKEGD LK+A HA TTD++L +T GK +T+ A L GRGHGE I+ Sbjct: 552 AMKGHLADFSTLSFKEGDKLKLAFHAETTDKLLFFTTGGKFFTIGANTLPGGRGHGEPIR 611 Query: 592 LLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK 651 +L+D+ ++QDI+TAFV+D + KLL+VS +GN FIV ESE +ANTRKGK + V + ++ K Sbjct: 612 ILVDMENDQDILTAFVHDPSAKLLLVSHEGNGFIVPESEAVANTRKGKQVMNVKAPDEAK 671 Query: 652 LVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTW 711 L +V+GDH+AVVGENRK+L+F + IPEM+RGKGVRLQ YKDGG+ DV F I +GL+W Sbjct: 672 LCQRVSGDHIAVVGENRKMLVFPLSDIPEMTRGKGVRLQKYKDGGVCDVRTFAIADGLSW 731 Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750 DSA R++NRS+ +L+ W+G R G LVPKGFPRSGKF Sbjct: 732 QDSADRTFNRSKEELVEWIGARASAGRLVPKGFPRSGKF 770 >gi|17987483|ref|NP_540117.1| DNA topoisomerase IV subunit A [Brucella melitensis bv. 1 str. 16M] gi|225627254|ref|ZP_03785291.1| DNA topoisomerase IV, A subunit [Brucella ceti str. Cudo] gi|17983180|gb|AAL52381.1| topoisomerase iv subunit a [Brucella melitensis bv. 1 str. 16M] gi|225617259|gb|EEH14304.1| DNA topoisomerase IV, A subunit [Brucella ceti str. Cudo] Length = 775 Score = 954 bits (2466), Expect = 0.0, Method: Compositional matrix adjust. Identities = 455/759 (59%), Positives = 588/759 (77%), Gaps = 22/759 (2%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 EE+++ V L+ ALEERYLAYALSTI RA+PD+RDG KPVHRRI+HAM + L+ A+ Sbjct: 17 EEHIERVDLKSALEERYLAYALSTIMHRALPDVRDGLKPVHRRIMHAMRLLRLNPDQAYA 76 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 K ARIVG+V+GK HPHGD S+YD+LVRLAQ F RYPL+ GQGNFGNIDGD+AAA RYTE Sbjct: 77 KCARIVGDVMGKFHPHGDASIYDALVRLAQDFAVRYPLVDGQGNFGNIDGDNAAAMRYTE 136 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 ARMT+VA L+L+G++E+A+DFR TYNEED EP+V P FPNLLANG++GIAVGMAT+IP Sbjct: 137 ARMTEVATLLLEGINENAIDFRPTYNEEDEEPIVLPGAFPNLLANGSAGIAVGMATNIPP 196 Query: 194 HNVQEICEAALALIDNPEISIEKLLEY----------------------IIGPDFPTGGI 231 HNV E+C +AL LI++P+ +E+L+ + GPDFPTGGI Sbjct: 197 HNVAELCSSALYLINHPDAPVEELVTSPEQWAEIEQESKTDPAALLKCKVRGPDFPTGGI 256 Query: 232 IVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELII 291 +VE +I+E+YR GRG FRVRARW EE RG+W IVVTEIPYQVQKSRLIEKIAEL++ Sbjct: 257 LVEEHGNILEAYRTGRGAFRVRARWHKEEGNRGTWVIVVTEIPYQVQKSRLIEKIAELLL 316 Query: 292 AKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRV 351 AK++PLL+DIRDESAED+RIVL PKNR++DP+LLMES+F L+++E+R LNMNVLS G+V Sbjct: 317 AKKLPLLDDIRDESAEDIRIVLEPKNRTVDPELLMESLFKLTELESRVSLNMNVLSHGKV 376 Query: 352 PQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED 411 P V+ L +L+EWL HR+EVL RRS FR+ I++R+EIL G LIAYLN+DE+I IIR ED Sbjct: 377 PNVLSLGAVLREWLEHRKEVLVRRSQFRLAEIEKRLEILGGFLIAYLNLDEVIRIIREED 436 Query: 412 KPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQ 471 +PK ++ F LT+ Q ++ILN+RLRSLRKLEE++I+ E D+L AEK ++ LL SG +Q Sbjct: 437 EPKQELMRAFELTDVQAESILNMRLRSLRKLEEFEIRKEFDDLTAEKTDLEGLLASGTRQ 496 Query: 472 WNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR 531 W +I+ EI+ V+E F +T LG+RRTTF D + QAMIE+EP+T+V+S +GW+R Sbjct: 497 WKKISTEIKAVREKFGPTTRLGKRRTTFAHAPTHDLEDIHQAMIEREPVTIVVSEKGWLR 556 Query: 532 SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ 591 ++K H D S L FKEGD LK+A HA TTD++L +T GK +T+ A L GRGHGE I+ Sbjct: 557 AMKGHLADFSTLSFKEGDKLKLAFHAETTDKLLFFTTGGKFFTIGANTLPGGRGHGEPIR 616 Query: 592 LLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK 651 +L+D+ ++QDI+TAFV+D + KLL+VS +GN FIV ESE +ANTRKGK + V + ++ K Sbjct: 617 ILVDMENDQDILTAFVHDPSAKLLLVSHEGNGFIVPESEAVANTRKGKQVMNVKAPDEAK 676 Query: 652 LVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTW 711 L +V+GDH+AVVGENRK+L+F + IPEM+RGKGVRLQ YKDGG+ DV F I +GL+W Sbjct: 677 LCQRVSGDHIAVVGENRKMLVFPLSDIPEMTRGKGVRLQKYKDGGVCDVRTFAIADGLSW 736 Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750 DSA R++NRS+ +L+ W+G R G LVPKGFPRSGKF Sbjct: 737 QDSADRTFNRSKEELVEWIGARASAGRLVPKGFPRSGKF 775 >gi|254689018|ref|ZP_05152272.1| DNA topoisomerase IV subunit A [Brucella abortus bv. 6 str. 870] gi|256257268|ref|ZP_05462804.1| DNA topoisomerase IV subunit A [Brucella abortus bv. 9 str. C68] gi|260754512|ref|ZP_05866860.1| DNA topoisomerase IV subunit A [Brucella abortus bv. 6 str. 870] gi|260883541|ref|ZP_05895155.1| DNA topoisomerase IV subunit A [Brucella abortus bv. 9 str. C68] gi|260674620|gb|EEX61441.1| DNA topoisomerase IV subunit A [Brucella abortus bv. 6 str. 870] gi|260873069|gb|EEX80138.1| DNA topoisomerase IV subunit A [Brucella abortus bv. 9 str. C68] Length = 770 Score = 953 bits (2464), Expect = 0.0, Method: Compositional matrix adjust. Identities = 455/759 (59%), Positives = 588/759 (77%), Gaps = 22/759 (2%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 EE+++ V L+ ALEERYLAYALSTI RA+PD+RDG KPVHRRI+HAM + L+ A+ Sbjct: 12 EEHIERVDLKSALEERYLAYALSTIMHRALPDVRDGLKPVHRRIMHAMRLLRLNPDQAYA 71 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 K ARIVG+V+GK HPHGD S+YD+LVRLAQ F RYPL+ GQGNFGNIDGD+AAA RYTE Sbjct: 72 KCARIVGDVMGKFHPHGDASIYDALVRLAQDFAVRYPLVDGQGNFGNIDGDNAAAMRYTE 131 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 ARMT+VA L+L+G++E+A+DFR TYNEED EP+V P FPNLLANG++GIAVGMAT+IP Sbjct: 132 ARMTEVATLLLEGINENAIDFRPTYNEEDEEPIVLPGAFPNLLANGSAGIAVGMATNIPP 191 Query: 194 HNVQEICEAALALIDNPEISIEKLLEY----------------------IIGPDFPTGGI 231 HNV E+C +AL LI++P+ +E+L+ + GPDFPTGGI Sbjct: 192 HNVAELCSSALYLINHPDAPVEELVTSPEQWAEIEQESKTDPAALLKCKVRGPDFPTGGI 251 Query: 232 IVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELII 291 +VE +I+E+YR GRG FRVRARW EE RG+W IVVTEIPYQVQKSRLIEKIAEL++ Sbjct: 252 LVEEHGNILEAYRTGRGAFRVRARWHKEEGNRGTWVIVVTEIPYQVQKSRLIEKIAELLL 311 Query: 292 AKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRV 351 AK++PLL+DIRDESAED+RIVL PKNR++DP+LLMES+F L+++E+R LNMNVLS G+V Sbjct: 312 AKKLPLLDDIRDESAEDIRIVLEPKNRTVDPELLMESLFKLTELESRVSLNMNVLSHGKV 371 Query: 352 PQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED 411 P V+ L +L+EWL HR+EVL RRS FR+ I++R+EIL G LIAYLN+DE+I IIR ED Sbjct: 372 PNVLSLGAVLREWLEHRKEVLVRRSQFRLAEIEKRLEILGGFLIAYLNLDEVIRIIREED 431 Query: 412 KPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQ 471 +PK ++ F LT+ Q ++ILN+RLRSLRKLEE++I+ E D+L AEK ++ LL SG +Q Sbjct: 432 EPKQELMRVFELTDVQAESILNMRLRSLRKLEEFEIRKEFDDLTAEKTDLEGLLASGTRQ 491 Query: 472 WNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR 531 W +I+ EI+ V+E F +T LG+RRTTF D + QAMIE+EP+T+V+S +GW+R Sbjct: 492 WKKISTEIKAVREKFGPTTRLGKRRTTFAHAPTHDLEDIHQAMIEREPVTIVVSEKGWLR 551 Query: 532 SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ 591 ++K H D S L FKEGD LK+A HA TTD++L +T GK +T+ A L GRGHGE I+ Sbjct: 552 AMKGHLADFSTLSFKEGDKLKLAFHAETTDKLLFFTTGGKFFTIGANTLPGGRGHGEPIR 611 Query: 592 LLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK 651 +L+D+ ++QDI+TAFV+D + KLL+VS +GN FIV ESE +ANTRKGK + V + ++ K Sbjct: 612 ILVDMENDQDILTAFVHDPSAKLLLVSHEGNGFIVPESEAVANTRKGKQVMNVKAPDEAK 671 Query: 652 LVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTW 711 L +V+GDH+AVVGENRK+L+F + IPEM+RGKGVRLQ YKDGG+ DV F I +GL+W Sbjct: 672 LCQRVSGDHIAVVGENRKMLVFPLSDIPEMTRGKGVRLQKYKDGGVCDVRTFAIADGLSW 731 Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750 DSA R++NRS+ +L+ W+G R G LVPKGFPRSGKF Sbjct: 732 QDSADRTFNRSKEELVEWIGARASAGRLVPKGFPRSGKF 770 >gi|62289707|ref|YP_221500.1| DNA topoisomerase IV subunit A [Brucella abortus bv. 1 str. 9-941] gi|82699636|ref|YP_414210.1| DNA topoisomerase IV subunit A [Brucella melitensis biovar Abortus 2308] gi|189023956|ref|YP_001934724.1| DNA topoisomerase IV subunit A [Brucella abortus S19] gi|254697153|ref|ZP_05158981.1| DNA topoisomerase IV subunit A [Brucella abortus bv. 2 str. 86/8/59] gi|254730049|ref|ZP_05188627.1| DNA topoisomerase IV subunit A [Brucella abortus bv. 4 str. 292] gi|260545538|ref|ZP_05821279.1| DNA topoisomerase IV subunit A [Brucella abortus NCTC 8038] gi|260757733|ref|ZP_05870081.1| DNA topoisomerase IV subunit A [Brucella abortus bv. 4 str. 292] gi|260761558|ref|ZP_05873901.1| DNA topoisomerase IV subunit A [Brucella abortus bv. 2 str. 86/8/59] gi|62195839|gb|AAX74139.1| ParC, DNA topoisomerase IV, A subunit [Brucella abortus bv. 1 str. 9-941] gi|82615737|emb|CAJ10733.1| DNA gyrase/topoisomerase IV, subunit A:Gram negative topoisomerase IV, subunit A:DNA gyrase C-terminal repeat, beta-propeller [Brucella melitensis biovar Abortus 2308] gi|189019528|gb|ACD72250.1| DNA topoisomerase IV subunit A [Brucella abortus S19] gi|260096945|gb|EEW80820.1| DNA topoisomerase IV subunit A [Brucella abortus NCTC 8038] gi|260668051|gb|EEX54991.1| DNA topoisomerase IV subunit A [Brucella abortus bv. 4 str. 292] gi|260671990|gb|EEX58811.1| DNA topoisomerase IV subunit A [Brucella abortus bv. 2 str. 86/8/59] Length = 770 Score = 953 bits (2463), Expect = 0.0, Method: Compositional matrix adjust. Identities = 455/759 (59%), Positives = 588/759 (77%), Gaps = 22/759 (2%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 EE+++ V L+ ALEERYLAYALSTI RA+PD+RDG KPVHRRI+HAM + L+ A+ Sbjct: 12 EEHIERVDLKSALEERYLAYALSTIMHRALPDVRDGLKPVHRRIMHAMRLLRLNPDQAYA 71 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 K ARIVG+V+GK HPHGD S+YD+LVRLAQ F RYPL+ GQGNFGNIDGD+AAA RYTE Sbjct: 72 KCARIVGDVMGKFHPHGDASIYDALVRLAQDFAVRYPLVDGQGNFGNIDGDNAAAMRYTE 131 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 ARMT+VA L+L+G++E+A+DFR TYNEED EP+V P FPNLLANG++GIAVGMAT+IP Sbjct: 132 ARMTEVATLLLEGINENAIDFRPTYNEEDEEPIVLPGAFPNLLANGSAGIAVGMATNIPP 191 Query: 194 HNVQEICEAALALIDNPEISIEKLLEY----------------------IIGPDFPTGGI 231 HNV E+C +AL LI++P+ +E+L+ + GPDFPTGGI Sbjct: 192 HNVAELCSSALYLINHPDAPVEELVTSPEQWAEIEQESKTDPAALLKCKVRGPDFPTGGI 251 Query: 232 IVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELII 291 +VE +I+E+YR GRG FRVRARW EE RG+W IVVTEIPYQVQKSRLIEKIAEL++ Sbjct: 252 LVEEHGNILEAYRTGRGAFRVRARWHKEEGNRGTWVIVVTEIPYQVQKSRLIEKIAELLL 311 Query: 292 AKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRV 351 AK++PLL+DIRDESAED+RIVL PKNR++DP+LLMES+F L+++E+R LNMNVLS G+V Sbjct: 312 AKKLPLLDDIRDESAEDIRIVLEPKNRTVDPELLMESLFKLTELESRVSLNMNVLSHGKV 371 Query: 352 PQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED 411 P V+ L +L+EWL HR+EVL RRS FR+ I++R+EIL G LIAYLN+DE+I IIR ED Sbjct: 372 PNVLSLGAVLREWLEHRKEVLVRRSQFRLAEIEKRLEILGGFLIAYLNLDEVIRIIREED 431 Query: 412 KPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQ 471 +PK ++ F LT+ Q ++ILN+RLRSLRKLEE++I+ E D+L AEK ++ LL SG +Q Sbjct: 432 EPKQELMRVFELTDVQAESILNMRLRSLRKLEEFEIRKEFDDLTAEKTDLEGLLASGTRQ 491 Query: 472 WNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR 531 W +I+ EI+ V+E F +T LG+RRTTF D + QAMIE+EP+T+V+S +GW+R Sbjct: 492 WKKISTEIKAVREKFGPTTRLGKRRTTFAHAPTHDLEDIHQAMIEREPVTIVVSEKGWLR 551 Query: 532 SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ 591 ++K H D S L FKEGD LK+A HA TTD++L +T GK +T+ A L GRGHGE I+ Sbjct: 552 AMKGHLADFSTLSFKEGDKLKLAFHAETTDKLLFFTTGGKFFTIGANTLPGGRGHGEPIR 611 Query: 592 LLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK 651 +L+D+ ++QDI+TAFV+D + KLL+VS +GN FIV ESE +ANTRKGK + V + ++ K Sbjct: 612 ILVDMENDQDILTAFVHDPSAKLLLVSHEGNGFIVPESEAVANTRKGKQVMNVKAPDEAK 671 Query: 652 LVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTW 711 L +V+GDH+AVVGENRK+L+F + IPEM+RGKGVRLQ YKDGG+ DV F I +GL+W Sbjct: 672 LCQRVSGDHIAVVGENRKMLVFPLSDIPEMTRGKGVRLQKYKDGGVCDVRSFAIADGLSW 731 Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750 DSA R++NRS+ +L+ W+G R G LVPKGFPRSGKF Sbjct: 732 QDSADRTFNRSKEELVEWIGARASAGRLVPKGFPRSGKF 770 >gi|297248114|ref|ZP_06931832.1| DNA topoisomerase IV, A subunit [Brucella abortus bv. 5 str. B3196] gi|297175283|gb|EFH34630.1| DNA topoisomerase IV, A subunit [Brucella abortus bv. 5 str. B3196] Length = 775 Score = 953 bits (2463), Expect = 0.0, Method: Compositional matrix adjust. Identities = 455/759 (59%), Positives = 588/759 (77%), Gaps = 22/759 (2%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 EE+++ V L+ ALEERYLAYALSTI RA+PD+RDG KPVHRRI+HAM + L+ A+ Sbjct: 17 EEHIERVDLKSALEERYLAYALSTIMHRALPDVRDGLKPVHRRIMHAMRLLRLNPDQAYA 76 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 K ARIVG+V+GK HPHGD S+YD+LVRLAQ F RYPL+ GQGNFGNIDGD+AAA RYTE Sbjct: 77 KCARIVGDVMGKFHPHGDASIYDALVRLAQDFAVRYPLVDGQGNFGNIDGDNAAAMRYTE 136 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 ARMT+VA L+L+G++E+A+DFR TYNEED EP+V P FPNLLANG++GIAVGMAT+IP Sbjct: 137 ARMTEVATLLLEGINENAIDFRPTYNEEDEEPIVLPGAFPNLLANGSAGIAVGMATNIPP 196 Query: 194 HNVQEICEAALALIDNPEISIEKLLEY----------------------IIGPDFPTGGI 231 HNV E+C +AL LI++P+ +E+L+ + GPDFPTGGI Sbjct: 197 HNVAELCSSALYLINHPDAPVEELVTSPEQWAEIEQESKTDPAALLKCKVRGPDFPTGGI 256 Query: 232 IVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELII 291 +VE +I+E+YR GRG FRVRARW EE RG+W IVVTEIPYQVQKSRLIEKIAEL++ Sbjct: 257 LVEEHGNILEAYRTGRGAFRVRARWHKEEGNRGTWVIVVTEIPYQVQKSRLIEKIAELLL 316 Query: 292 AKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRV 351 AK++PLL+DIRDESAED+RIVL PKNR++DP+LLMES+F L+++E+R LNMNVLS G+V Sbjct: 317 AKKLPLLDDIRDESAEDIRIVLEPKNRTVDPELLMESLFKLTELESRVSLNMNVLSHGKV 376 Query: 352 PQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED 411 P V+ L +L+EWL HR+EVL RRS FR+ I++R+EIL G LIAYLN+DE+I IIR ED Sbjct: 377 PNVLSLGAVLREWLEHRKEVLVRRSQFRLAEIEKRLEILGGFLIAYLNLDEVIRIIREED 436 Query: 412 KPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQ 471 +PK ++ F LT+ Q ++ILN+RLRSLRKLEE++I+ E D+L AEK ++ LL SG +Q Sbjct: 437 EPKQELMRVFELTDVQAESILNMRLRSLRKLEEFEIRKEFDDLTAEKTDLEGLLASGTRQ 496 Query: 472 WNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR 531 W +I+ EI+ V+E F +T LG+RRTTF D + QAMIE+EP+T+V+S +GW+R Sbjct: 497 WKKISTEIKAVREKFGPTTRLGKRRTTFAHAPTHDLEDIHQAMIEREPVTIVVSEKGWLR 556 Query: 532 SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ 591 ++K H D S L FKEGD LK+A HA TTD++L +T GK +T+ A L GRGHGE I+ Sbjct: 557 AMKGHLADFSTLSFKEGDKLKLAFHAETTDKLLFFTTGGKFFTIGANTLPGGRGHGEPIR 616 Query: 592 LLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK 651 +L+D+ ++QDI+TAFV+D + KLL+VS +GN FIV ESE +ANTRKGK + V + ++ K Sbjct: 617 ILVDMENDQDILTAFVHDPSAKLLLVSHEGNGFIVPESEAVANTRKGKQVMNVKAPDEAK 676 Query: 652 LVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTW 711 L +V+GDH+AVVGENRK+L+F + IPEM+RGKGVRLQ YKDGG+ DV F I +GL+W Sbjct: 677 LCQRVSGDHIAVVGENRKMLVFPLSDIPEMTRGKGVRLQKYKDGGVCDVRTFAIADGLSW 736 Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750 DSA R++NRS+ +L+ W+G R G LVPKGFPRSGKF Sbjct: 737 QDSADRTFNRSKEELVEWIGARASAGRLVPKGFPRSGKF 775 >gi|239831581|ref|ZP_04679910.1| DNA topoisomerase IV, A subunit [Ochrobactrum intermedium LMG 3301] gi|239823848|gb|EEQ95416.1| DNA topoisomerase IV, A subunit [Ochrobactrum intermedium LMG 3301] Length = 787 Score = 953 bits (2463), Expect = 0.0, Method: Compositional matrix adjust. Identities = 455/759 (59%), Positives = 588/759 (77%), Gaps = 22/759 (2%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 EE+++ V L+ ALEERYLAYALSTI RA+PD+RDG KPVHRRI+HAM + L+ A+ Sbjct: 29 EEHIERVDLKSALEERYLAYALSTIMHRALPDVRDGLKPVHRRIMHAMRLLRLNPDQAYA 88 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 K ARIVG+V+GK HPHGD S+YD+LVRLAQ F RYPL+ GQGNFGNIDGD+AAA RYTE Sbjct: 89 KCARIVGDVMGKFHPHGDASIYDALVRLAQDFAVRYPLVDGQGNFGNIDGDNAAAMRYTE 148 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 ARMT+VA L+L+G++E+A+DFR TYNEED EP+V P FPNLLANG++GIAVGMAT+IP Sbjct: 149 ARMTEVATLLLEGINENAIDFRPTYNEEDEEPIVLPGAFPNLLANGSAGIAVGMATNIPP 208 Query: 194 HNVQEICEAALALIDNPEISIEKLLEY----------------------IIGPDFPTGGI 231 HNV E+C +AL LI++PE +E+L+ + GPDFPTGGI Sbjct: 209 HNVAELCSSALYLINHPEAPVEELVTSPEQWEELKREAETDPAALLKCKVRGPDFPTGGI 268 Query: 232 IVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELII 291 +VE +I+++YR GRG FRVRARW EE RG+W IV+TEIPYQVQKSRLIEKIAEL++ Sbjct: 269 LVEEHGNILDAYRTGRGAFRVRARWEKEEGNRGTWVIVITEIPYQVQKSRLIEKIAELLL 328 Query: 292 AKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRV 351 AK++PLL+D+RDESAED+RIVL PKNR++DP+LLMES+F L+++E+R LNMNVLS G+V Sbjct: 329 AKKLPLLDDVRDESAEDIRIVLEPKNRTVDPELLMESLFKLTELESRVSLNMNVLSHGKV 388 Query: 352 PQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED 411 P V+ L +L+EWL HR+EVL RRS FR+ I+RR+EIL GLLIAYLN+DE+I IIR ED Sbjct: 389 PNVLSLGAVLREWLDHRKEVLVRRSQFRLAEIERRLEILGGLLIAYLNLDEVIRIIREED 448 Query: 412 KPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQ 471 +PK ++ F LT+ Q ++ILN+RLRSLRKLEE++I+ E D+L EK ++ LL SG +Q Sbjct: 449 EPKQDLMRTFELTDVQAESILNMRLRSLRKLEEFEIRKEFDDLTVEKTDLEGLLASGTRQ 508 Query: 472 WNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR 531 W +I+ EI+ V+E F T+LG RRTTF + D + QAMIE+EP+T+V+S +GW+R Sbjct: 509 WKKISAEIKSVREKFGPKTELGARRTTFADAPTHDLEDIHQAMIEREPVTIVVSEKGWLR 568 Query: 532 SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ 591 ++K H D S L FKEGD LK+A HA TTD++L +T GK +T+ A L GRGHGE I+ Sbjct: 569 AMKGHLADFSTLAFKEGDKLKLAFHAETTDKLLFFTTGGKFFTIGANTLPGGRGHGEPIR 628 Query: 592 LLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK 651 +L+D+ ++QDI+TAFV+D KLL+VS +GN FIV ESE +ANTRKGK + V + ++ K Sbjct: 629 ILVDMENDQDILTAFVHDPAAKLLLVSHEGNGFIVPESEAVANTRKGKQVMNVKAPDEAK 688 Query: 652 LVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTW 711 L +V+GDH+AVVGENRK+++F + IPEM+RGKGVRLQ YKDGG+SDV F I EGL+W Sbjct: 689 LCQRVSGDHIAVVGENRKMVVFPLSDIPEMTRGKGVRLQKYKDGGVSDVRTFAIAEGLSW 748 Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750 DSA R++NRS+ +L+ W+G R G LVPKGFPRSGKF Sbjct: 749 QDSAERTFNRSKEELVEWIGARASAGRLVPKGFPRSGKF 787 >gi|237815195|ref|ZP_04594193.1| DNA topoisomerase IV, A subunit [Brucella abortus str. 2308 A] gi|237790032|gb|EEP64242.1| DNA topoisomerase IV, A subunit [Brucella abortus str. 2308 A] Length = 775 Score = 952 bits (2462), Expect = 0.0, Method: Compositional matrix adjust. Identities = 455/759 (59%), Positives = 588/759 (77%), Gaps = 22/759 (2%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 EE+++ V L+ ALEERYLAYALSTI RA+PD+RDG KPVHRRI+HAM + L+ A+ Sbjct: 17 EEHIERVDLKSALEERYLAYALSTIMHRALPDVRDGLKPVHRRIMHAMRLLRLNPDQAYA 76 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 K ARIVG+V+GK HPHGD S+YD+LVRLAQ F RYPL+ GQGNFGNIDGD+AAA RYTE Sbjct: 77 KCARIVGDVMGKFHPHGDASIYDALVRLAQDFAVRYPLVDGQGNFGNIDGDNAAAMRYTE 136 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 ARMT+VA L+L+G++E+A+DFR TYNEED EP+V P FPNLLANG++GIAVGMAT+IP Sbjct: 137 ARMTEVATLLLEGINENAIDFRPTYNEEDEEPIVLPGAFPNLLANGSAGIAVGMATNIPP 196 Query: 194 HNVQEICEAALALIDNPEISIEKLLEY----------------------IIGPDFPTGGI 231 HNV E+C +AL LI++P+ +E+L+ + GPDFPTGGI Sbjct: 197 HNVAELCSSALYLINHPDAPVEELVTSPEQWAEIEQESKTDPAALLKCKVRGPDFPTGGI 256 Query: 232 IVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELII 291 +VE +I+E+YR GRG FRVRARW EE RG+W IVVTEIPYQVQKSRLIEKIAEL++ Sbjct: 257 LVEEHGNILEAYRTGRGAFRVRARWHKEEGNRGTWVIVVTEIPYQVQKSRLIEKIAELLL 316 Query: 292 AKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRV 351 AK++PLL+DIRDESAED+RIVL PKNR++DP+LLMES+F L+++E+R LNMNVLS G+V Sbjct: 317 AKKLPLLDDIRDESAEDIRIVLEPKNRTVDPELLMESLFKLTELESRVSLNMNVLSHGKV 376 Query: 352 PQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED 411 P V+ L +L+EWL HR+EVL RRS FR+ I++R+EIL G LIAYLN+DE+I IIR ED Sbjct: 377 PNVLSLGAVLREWLEHRKEVLVRRSQFRLAEIEKRLEILGGFLIAYLNLDEVIRIIREED 436 Query: 412 KPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQ 471 +PK ++ F LT+ Q ++ILN+RLRSLRKLEE++I+ E D+L AEK ++ LL SG +Q Sbjct: 437 EPKQELMRVFELTDVQAESILNMRLRSLRKLEEFEIRKEFDDLTAEKTDLEGLLASGTRQ 496 Query: 472 WNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR 531 W +I+ EI+ V+E F +T LG+RRTTF D + QAMIE+EP+T+V+S +GW+R Sbjct: 497 WKKISTEIKAVREKFGPTTRLGKRRTTFAHAPTHDLEDIHQAMIEREPVTIVVSEKGWLR 556 Query: 532 SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ 591 ++K H D S L FKEGD LK+A HA TTD++L +T GK +T+ A L GRGHGE I+ Sbjct: 557 AMKGHLADFSTLSFKEGDKLKLAFHAETTDKLLFFTTGGKFFTIGANTLPGGRGHGEPIR 616 Query: 592 LLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK 651 +L+D+ ++QDI+TAFV+D + KLL+VS +GN FIV ESE +ANTRKGK + V + ++ K Sbjct: 617 ILVDMENDQDILTAFVHDPSAKLLLVSHEGNGFIVPESEAVANTRKGKQVMNVKAPDEAK 676 Query: 652 LVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTW 711 L +V+GDH+AVVGENRK+L+F + IPEM+RGKGVRLQ YKDGG+ DV F I +GL+W Sbjct: 677 LCQRVSGDHIAVVGENRKMLVFPLSDIPEMTRGKGVRLQKYKDGGVCDVRSFAIADGLSW 736 Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750 DSA R++NRS+ +L+ W+G R G LVPKGFPRSGKF Sbjct: 737 QDSADRTFNRSKEELVEWIGARASAGRLVPKGFPRSGKF 775 >gi|254707020|ref|ZP_05168848.1| DNA topoisomerase IV subunit A [Brucella pinnipedialis M163/99/10] gi|254709871|ref|ZP_05171682.1| DNA topoisomerase IV subunit A [Brucella pinnipedialis B2/94] gi|256031363|ref|ZP_05444977.1| DNA topoisomerase IV subunit A [Brucella pinnipedialis M292/94/1] gi|261314487|ref|ZP_05953684.1| DNA topoisomerase IV subunit A [Brucella pinnipedialis M163/99/10] gi|261317413|ref|ZP_05956610.1| DNA topoisomerase IV subunit A [Brucella pinnipedialis B2/94] gi|265988450|ref|ZP_06101007.1| DNA topoisomerase IV subunit A [Brucella pinnipedialis M292/94/1] gi|261296636|gb|EEY00133.1| DNA topoisomerase IV subunit A [Brucella pinnipedialis B2/94] gi|261303513|gb|EEY07010.1| DNA topoisomerase IV subunit A [Brucella pinnipedialis M163/99/10] gi|264660647|gb|EEZ30908.1| DNA topoisomerase IV subunit A [Brucella pinnipedialis M292/94/1] Length = 770 Score = 951 bits (2459), Expect = 0.0, Method: Compositional matrix adjust. Identities = 454/759 (59%), Positives = 587/759 (77%), Gaps = 22/759 (2%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 EE+++ V L+ ALEERYLAYALSTI RA+PD+RDG KPVHRRI+HAM + L+ A+ Sbjct: 12 EEHIERVDLKSALEERYLAYALSTIMHRALPDVRDGLKPVHRRIMHAMRLLRLNPDQAYA 71 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 K ARIVG+V+GK HPHGD S+YD+LVRLA F RYPL+ GQGNFGNIDGD+AAA RYTE Sbjct: 72 KCARIVGDVMGKFHPHGDASIYDALVRLALDFAVRYPLVDGQGNFGNIDGDNAAAMRYTE 131 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 ARMT+VA L+L+G++E+A+DFR TYNEED EP+V P FPNLLANG++GIAVGMAT+IP Sbjct: 132 ARMTEVATLLLEGINENAIDFRPTYNEEDEEPIVLPGAFPNLLANGSAGIAVGMATNIPP 191 Query: 194 HNVQEICEAALALIDNPEISIEKLLEY----------------------IIGPDFPTGGI 231 HNV E+C +AL LI++P+ +E+L+ + GPDFPTGGI Sbjct: 192 HNVAELCSSALYLINHPDAPVEELVTSPEQWAEIEQESKTDPAALLKCKVRGPDFPTGGI 251 Query: 232 IVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELII 291 +VE +I+E+YR GRG FRVRARW EE RG+W IVVTEIPYQVQKSRLIEKIAEL++ Sbjct: 252 LVEEHGNILEAYRTGRGAFRVRARWHKEEGNRGTWVIVVTEIPYQVQKSRLIEKIAELLL 311 Query: 292 AKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRV 351 AK++PLL+DIRDESAED+RIVL PKNR++DP+LLMES+F L+++E+R LNMNVLS G+V Sbjct: 312 AKKLPLLDDIRDESAEDIRIVLEPKNRTVDPELLMESLFKLTELESRVSLNMNVLSHGKV 371 Query: 352 PQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED 411 P V+ L +L+EWL HR+EVL RRS FR+ I++R+EIL G LIAYLN+DE+I IIR ED Sbjct: 372 PNVLSLGAVLREWLEHRKEVLVRRSQFRLAEIEKRLEILGGFLIAYLNLDEVIRIIREED 431 Query: 412 KPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQ 471 +PK ++ F LT+ Q ++ILN+RLRSLRKLEE++I+ E D+L AEK ++ LL SG +Q Sbjct: 432 EPKQELMRAFELTDVQAESILNMRLRSLRKLEEFEIRKEFDDLTAEKTDLEGLLASGTRQ 491 Query: 472 WNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR 531 W +I+ EI+ V+E F +T LG+RRTTF D + QAMIE+EP+T+V+S +GW+R Sbjct: 492 WKKISTEIKAVREKFGPTTRLGKRRTTFAHAPTHDLEDIHQAMIEREPVTIVVSEKGWLR 551 Query: 532 SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ 591 ++K H D S L FKEGD LK+A HA TTD++L +T GK +T+ A L GRGHGE I+ Sbjct: 552 AMKGHLADFSTLSFKEGDKLKLAFHAETTDKLLFFTTGGKFFTIGANTLPGGRGHGEPIR 611 Query: 592 LLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK 651 +L+D+ ++QDI+TAFV+D + KLL+VS +GN FIV ESE +ANTRKGK + V + ++ K Sbjct: 612 ILVDMENDQDILTAFVHDPSAKLLLVSHEGNGFIVPESEAVANTRKGKQVMNVKAPDEAK 671 Query: 652 LVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTW 711 L +V+GDH+AVVGENRK+L+F + IPEM+RGKGVRLQ YKDGG+ DV F I +GL+W Sbjct: 672 LCQRVSGDHIAVVGENRKMLVFPLSDIPEMTRGKGVRLQKYKDGGVCDVRTFAIADGLSW 731 Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750 DSA R++NRS+ +L+ W+G R G LVPKGFPRSGKF Sbjct: 732 QDSADRTFNRSKEELVEWIGARASAGRLVPKGFPRSGKF 770 >gi|256060873|ref|ZP_05451033.1| DNA topoisomerase IV subunit A [Brucella neotomae 5K33] gi|261324871|ref|ZP_05964068.1| DNA topoisomerase IV subunit A [Brucella neotomae 5K33] gi|261300851|gb|EEY04348.1| DNA topoisomerase IV subunit A [Brucella neotomae 5K33] Length = 770 Score = 951 bits (2458), Expect = 0.0, Method: Compositional matrix adjust. Identities = 454/759 (59%), Positives = 587/759 (77%), Gaps = 22/759 (2%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 EE+++ V L+ ALEERYLAYALSTI RA+PD+RDG KPVHRRI+HAM + L+ A+ Sbjct: 12 EEHIERVDLKSALEERYLAYALSTIMHRALPDVRDGLKPVHRRIMHAMRLLRLNPDQAYA 71 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 K ARIVG+V+GK HPHGD S+YD+LVRLAQ F RYPL+ GQGNFGNIDGD+AAA RYTE Sbjct: 72 KCARIVGDVMGKFHPHGDASIYDALVRLAQDFAVRYPLVDGQGNFGNIDGDNAAAMRYTE 131 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 ARMT+VA L+L+G++E+A+DFR TYNEED EP+V P FPNLLANG++GIAVGMAT+IP Sbjct: 132 ARMTEVATLLLEGINENAIDFRPTYNEEDEEPIVLPGAFPNLLANGSAGIAVGMATNIPP 191 Query: 194 HNVQEICEAALALIDNPEISIEKLLEY----------------------IIGPDFPTGGI 231 HNV E+C +AL LI++P+ +E+L+ + GPDFPTGGI Sbjct: 192 HNVAELCSSALYLINHPDAPVEELVTSPEQWAEIEQESKTDPAALLKCKVRGPDFPTGGI 251 Query: 232 IVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELII 291 +VE +I+E+YR GRG FRVRARW EE RG+W IVVTEIPYQVQKSRLIEKIAEL++ Sbjct: 252 LVEEHGNILEAYRTGRGAFRVRARWHKEEGNRGTWVIVVTEIPYQVQKSRLIEKIAELLL 311 Query: 292 AKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRV 351 AK++PLL+DIRDESAED+RIVL PKNR++DP+LLMES+F L+++E+R LNMNVLS G+V Sbjct: 312 AKKLPLLDDIRDESAEDIRIVLEPKNRTVDPELLMESLFKLTELESRVSLNMNVLSHGKV 371 Query: 352 PQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED 411 P V+ L +L+EWL HR+EVL RRS FR+ I++R+EIL G LIAYLN+DE+I IIR ED Sbjct: 372 PNVLSLGAVLREWLEHRKEVLVRRSQFRLAEIEKRLEILGGFLIAYLNLDEVIRIIREED 431 Query: 412 KPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQ 471 +PK ++ F LT+ Q ++ILN+RLRSLRKLEE++I+ E D+L AEK ++ LL SG +Q Sbjct: 432 EPKQELMRAFELTDVQAESILNMRLRSLRKLEEFEIRKEFDDLTAEKTDLEGLLASGTRQ 491 Query: 472 WNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR 531 W +I+ EI+ V+E F +T LG+RRTTF D + QAMIE+EP+T+V+S +GW+R Sbjct: 492 WKKISTEIKAVREKFGPTTRLGKRRTTFAHAPTHDLEDIHQAMIEREPVTIVVSEKGWLR 551 Query: 532 SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ 591 ++K H D S L FKEGD LK+A HA TTD++L +T GK +T+ A L GRGHGE I+ Sbjct: 552 AMKGHLADFSTLSFKEGDKLKLAFHAETTDKLLFFTTGGKFFTIGANTLPGGRGHGEPIR 611 Query: 592 LLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK 651 +L+D+ ++QDI+TAFV+D + KLL+VS +GN FIV ESE +ANTRKGK + V + ++ K Sbjct: 612 ILVDMENDQDILTAFVHDPSAKLLLVSHEGNGFIVPESEAVANTRKGKQVMNVKAPDEAK 671 Query: 652 LVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTW 711 L +V+GDH+AVVGENRK+L+F + IPEM+RGKGVRLQ YK GG+ DV F I +GL+W Sbjct: 672 LCQRVSGDHIAVVGENRKMLVFPLSDIPEMTRGKGVRLQKYKGGGVCDVRTFAIADGLSW 731 Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750 DSA R++NRS+ +L+ W+G R G LVPKGFPRSGKF Sbjct: 732 QDSADRTFNRSKEELVEWIGARASAGRLVPKGFPRSGKF 770 >gi|328543510|ref|YP_004303619.1| DNA topoisomerase IV subunit A [polymorphum gilvum SL003B-26A1] gi|326413254|gb|ADZ70317.1| DNA topoisomerase IV subunit A [Polymorphum gilvum SL003B-26A1] Length = 745 Score = 951 bits (2458), Expect = 0.0, Method: Compositional matrix adjust. Identities = 448/735 (60%), Positives = 569/735 (77%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 ++ V+LR ALEERYLAYALSTI RA+PD+RDG KPVHRR+++AM + LD GA FKK Sbjct: 6 GIEGVNLREALEERYLAYALSTIMHRALPDVRDGLKPVHRRLLYAMRLLKLDPGAGFKKC 65 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 AR+VG+VIGK HPHGDQ+VY++LVRLAQ F QRYPLI GQGNFGNIDGDSAAA RYTEAR Sbjct: 66 ARVVGDVIGKYHPHGDQAVYEALVRLAQDFAQRYPLIDGQGNFGNIDGDSAAAMRYTEAR 125 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 +T +A +L G+DEDAVDFR+TY+ ED EP+V P FPNLLANG+SGIAVGMATSIP HN Sbjct: 126 LTDIARRLLDGLDEDAVDFRETYDGEDREPIVLPGGFPNLLANGSSGIAVGMATSIPPHN 185 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 E+CEAA LI NP LL++I GPDFPTGG++V+ ++E+Y GRG FRVRAR Sbjct: 186 AFELCEAAQHLIRNPNADTRALLQFIKGPDFPTGGLLVDDPVGLLETYETGRGSFRVRAR 245 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315 W +E++GRG W +VVTEIPYQVQKSRLIEKIAEL++A+++PLL+DIRDESAEDVRIVL P Sbjct: 246 WAIEDLGRGQWVVVVTEIPYQVQKSRLIEKIAELLMARKLPLLDDIRDESAEDVRIVLVP 305 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 ++R++D LLMES+F L+D+E+RFPLNMNVLS G+VP VM + +L+EWL HR+ VL RR Sbjct: 306 RSRNVDAALLMESLFKLTDLESRFPLNMNVLSHGKVPMVMGVRQVLREWLDHRKAVLIRR 365 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435 S R+ I+ R+E+L G L+AYLN+DE+I IIR ED+PK ++ F LT+ Q +AILN+R Sbjct: 366 SQHRLDQIEHRLEVLDGYLVAYLNLDEVIRIIREEDEPKAELMRTFGLTDVQAEAILNMR 425 Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495 LRSLRKLEE +I+ E D L AE++++ +LL S +QW +I +I EV + + T LGRR Sbjct: 426 LRSLRKLEEMEIRKEHDKLSAERDELKALLGSEARQWTRIGKDIAEVGKAYGPETPLGRR 485 Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555 RT F E D LQQAMIEKEPITVVIS++GWIR+LK H DLS+L FK+GD LK+A Sbjct: 486 RTGFSEAPGHDVEDLQQAMIEKEPITVVISDKGWIRALKGHQQDLSSLAFKQGDKLKLAF 545 Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615 HA TTD+IL+ ST GK +TL A L GRGHGE I+L++D+ QD+V+AFV+ KLL Sbjct: 546 HAETTDKILVFSTGGKFFTLGADRLPGGRGHGEPIRLMVDMEEGQDVVSAFVHKPGRKLL 605 Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSI 675 V S + F+V E++++ANTRKGK L +++ + L + GDHVAV+G+NRKLL+F + Sbjct: 606 VASDEARGFVVPETDVVANTRKGKQVLNLTAPNEAVLCIAAEGDHVAVIGQNRKLLVFPL 665 Query: 676 DQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGG 735 Q+PEM RG+GVRLQ Y+DG ++D + F +GLTWIDS+GRS+NRS +DL W G RG Sbjct: 666 AQVPEMGRGRGVRLQRYRDGHLADAVVFDGAQGLTWIDSSGRSFNRSLDDLADWRGDRGQ 725 Query: 736 VGSLVPKGFPRSGKF 750 G L P GFPRS +F Sbjct: 726 AGRLPPTGFPRSNRF 740 >gi|148559566|ref|YP_001258735.1| DNA topoisomerase IV subunit A [Brucella ovis ATCC 25840] gi|148370823|gb|ABQ60802.1| DNA topoisomerase IV, A subunit [Brucella ovis ATCC 25840] Length = 775 Score = 949 bits (2454), Expect = 0.0, Method: Compositional matrix adjust. Identities = 454/759 (59%), Positives = 587/759 (77%), Gaps = 22/759 (2%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 EE+++ V L+ ALEERYLAYALSTI RA+PD+RDG KPVHRRI+HAM + L+ A+ Sbjct: 17 EEHIERVDLKSALEERYLAYALSTIMHRALPDVRDGLKPVHRRIMHAMRLLRLNPDQAYA 76 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 K ARIVG+V+GK HPHGD S+YD+LVRLAQ F RYPL+ GQGNFGNIDGD+AAA RYTE Sbjct: 77 KCARIVGDVMGKFHPHGDASIYDALVRLAQDFAVRYPLVDGQGNFGNIDGDNAAAMRYTE 136 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 ARMT+VA L+L+G++E+A+DFR TYNEED EP+V P FPNLLANG++GIAVGMAT+IP Sbjct: 137 ARMTEVATLLLEGINENAIDFRPTYNEEDEEPIVLPGAFPNLLANGSAGIAVGMATNIPP 196 Query: 194 HNVQEICEAALALIDNPEISIEKLLEY----------------------IIGPDFPTGGI 231 HNV E+C +AL LI++P+ +E+L+ + GPDFPTGGI Sbjct: 197 HNVAELCSSALYLINHPDAPVEELVTSPEQWAEIEQESKTDPAALLKCKVRGPDFPTGGI 256 Query: 232 IVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELII 291 +VE +I+E+YR GRG FRVRARW EE RG+W IVVTEIPYQVQKSRLIEKIAEL++ Sbjct: 257 LVEEHGNILEAYRTGRGAFRVRARWHKEEGNRGTWVIVVTEIPYQVQKSRLIEKIAELLL 316 Query: 292 AKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRV 351 AK++PLL+DIRDESAED+RIVL PKNR++DP+LLMES+F L+++E+R LNMNVLS G+V Sbjct: 317 AKKLPLLDDIRDESAEDIRIVLEPKNRTVDPELLMESLFKLTELESRVSLNMNVLSHGKV 376 Query: 352 PQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED 411 P V+ L +L+EWL HR+EVL RRS FR+ I++ +EIL G LIAYLN+DE+I IIR ED Sbjct: 377 PNVLSLGAVLREWLEHRKEVLVRRSQFRLAEIEKCLEILGGFLIAYLNLDEVIRIIREED 436 Query: 412 KPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQ 471 +PK ++ F LT+ Q ++ILN+RLRSLRKLEE++I+ E D+L AEK ++ LL SG +Q Sbjct: 437 EPKQELMRAFELTDVQAESILNMRLRSLRKLEEFEIRKEFDDLTAEKTDLEGLLASGTRQ 496 Query: 472 WNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR 531 W +I+ EI+ V+E F +T LG+RRTTF D + QAMIE+EP+T+V+S +GW+R Sbjct: 497 WKKISTEIKAVREKFGPTTRLGKRRTTFTHAPTHDLEDIHQAMIEREPVTIVVSEKGWLR 556 Query: 532 SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ 591 ++K H D S L FKEGD LK+A HA TTD++L +T GK +T+ A L GRGHGE I+ Sbjct: 557 AMKGHLADFSTLSFKEGDKLKLAFHAETTDKLLFFTTGGKFFTIGANTLPGGRGHGEPIR 616 Query: 592 LLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK 651 +L+D+ ++QDI+TAFV+D + KLL+VS +GN FIV ESE +ANTRKGK + V + ++ K Sbjct: 617 ILVDMENDQDILTAFVHDPSAKLLLVSHEGNGFIVPESEAVANTRKGKQVMNVKAPDEAK 676 Query: 652 LVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTW 711 L +V+GDH+AVVGENRK+L+F + IPEM+RGKGVRLQ YKDGG+ DV F I +GL+W Sbjct: 677 LCQRVSGDHIAVVGENRKMLVFPLSDIPEMTRGKGVRLQKYKDGGVCDVRTFAIADGLSW 736 Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750 DSA R++NRS+ +L+ W+G R G LVPKGFPRSGKF Sbjct: 737 QDSADRTFNRSKEELVEWIGARASAGRLVPKGFPRSGKF 775 >gi|153009866|ref|YP_001371081.1| DNA topoisomerase IV subunit A [Ochrobactrum anthropi ATCC 49188] gi|151561754|gb|ABS15252.1| DNA topoisomerase IV, A subunit [Ochrobactrum anthropi ATCC 49188] Length = 770 Score = 949 bits (2453), Expect = 0.0, Method: Compositional matrix adjust. Identities = 453/759 (59%), Positives = 587/759 (77%), Gaps = 22/759 (2%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 EE+++ V L+ ALEERYLAYALSTI RA+PD+RDG KPVHRRI+HAM + L+ A+ Sbjct: 12 EEHIERVDLKSALEERYLAYALSTIMHRALPDVRDGLKPVHRRIMHAMRLLRLNPDQAYA 71 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 K ARIVG+V+GK HPHGD S+YD+LVRLAQ F RYPL+ GQGNFGNIDGD+AAA RYTE Sbjct: 72 KCARIVGDVMGKFHPHGDASIYDALVRLAQDFAVRYPLVDGQGNFGNIDGDNAAAMRYTE 131 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 ARMT+VA L+L+G++E+A+DFR TYNEED EP+V P FPNLLANG++GIAVGMAT+IP Sbjct: 132 ARMTEVATLLLEGINENAIDFRPTYNEEDEEPIVLPGAFPNLLANGSAGIAVGMATNIPP 191 Query: 194 HNVQEICEAALALIDNPEISIEKLLEY----------------------IIGPDFPTGGI 231 HNV E+C +AL +I++P+ +E+L+ + GPDFPTGGI Sbjct: 192 HNVAELCSSALYIINHPDAPVEELVTSPEQWEELKREAETDPAALLKCKVRGPDFPTGGI 251 Query: 232 IVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELII 291 +VE +I+E+YR GRG FRVRARW EE RG+W IVVTEIPYQVQKSRLIEKIAEL++ Sbjct: 252 LVEEHGNILEAYRTGRGAFRVRARWEKEEGNRGTWVIVVTEIPYQVQKSRLIEKIAELLL 311 Query: 292 AKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRV 351 AK++PLL+DIRDESAED+RIVL PKNR++DP+LLMES+F L+++E+R LNMNVLS G+V Sbjct: 312 AKKLPLLDDIRDESAEDIRIVLEPKNRTVDPELLMESLFKLTELESRVSLNMNVLSHGKV 371 Query: 352 PQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED 411 P V+ L +L+EWL HR+EVL RRS FR+ I+RR+EIL G LIAYLN+DE+I IIR ED Sbjct: 372 PNVLSLGSVLREWLDHRKEVLVRRSQFRLAEIERRLEILGGFLIAYLNLDEVIRIIREED 431 Query: 412 KPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQ 471 +PK ++ F LT+ Q ++ILN+RLRSLRKLEE++I+ E D+L EK ++ LL SG +Q Sbjct: 432 EPKQDLMRTFELTDVQAESILNMRLRSLRKLEEFEIRKEFDDLTVEKTDLEGLLASGTRQ 491 Query: 472 WNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR 531 W +I+ EI+ V+E F T+LG RRTTF + D + QAMIE+EP+T+V+S +GW+R Sbjct: 492 WKKISAEIKSVREKFGPKTELGARRTTFADAPTHDLEDIHQAMIEREPVTIVVSEKGWLR 551 Query: 532 SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ 591 ++K H D S L FKEGD LK+A HA TTD++L +T GK +T+ A L GRGHGE I+ Sbjct: 552 AMKGHLADFSTLAFKEGDKLKLAFHAETTDKLLFFTTGGKFFTIGANTLPGGRGHGEPIR 611 Query: 592 LLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK 651 +L+D+ ++QDI+TAFV+D KLL+VS +GN FIV ESE +ANTRKGK + V + ++ K Sbjct: 612 ILVDMENDQDILTAFVHDPAAKLLLVSHEGNGFIVPESEAVANTRKGKQVMNVKAPDEAK 671 Query: 652 LVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTW 711 L +V+GDH+AVVGENRK+++F + IPEM+RGKGVRLQ YKDGG+SDV F I +GL+W Sbjct: 672 LCQRVSGDHIAVVGENRKMVVFPLSDIPEMTRGKGVRLQKYKDGGVSDVRTFAIADGLSW 731 Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750 DSA R++NRS+ +L+ W+G R G LVPKGFPRSG+F Sbjct: 732 QDSAERTFNRSKEELVEWIGARASAGRLVPKGFPRSGRF 770 >gi|307946581|ref|ZP_07661916.1| DNA topoisomerase IV, A subunit [Roseibium sp. TrichSKD4] gi|307770245|gb|EFO29471.1| DNA topoisomerase IV, A subunit [Roseibium sp. TrichSKD4] Length = 752 Score = 943 bits (2437), Expect = 0.0, Method: Compositional matrix adjust. Identities = 437/736 (59%), Positives = 571/736 (77%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 + V+ + LR ALEERYLAYALSTI RA+PD+RDG KPVHRR+++AM + LD G+ FKK Sbjct: 12 DGVQGIDLRTALEERYLAYALSTIMHRALPDVRDGLKPVHRRLLYAMRLLKLDPGSGFKK 71 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 AR+VG+VIGK HPHGDQ+VYD+LVRLAQ F QRYPL+ GQGNFGN+DGD+AAA RYTEA Sbjct: 72 CARVVGDVIGKYHPHGDQAVYDALVRLAQTFAQRYPLVDGQGNFGNVDGDNAAAMRYTEA 131 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 R+T+ A+ +L G+DE+A+DFR+TY+ ED EP+V P FPNLLANG+SGIAVGMATSIP H Sbjct: 132 RLTETAKRLLDGLDENAIDFRETYDGEDKEPIVLPGGFPNLLANGSSGIAVGMATSIPPH 191 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 N E+CEA LI NP+ ++ LL++I GPDFPTGG++V SI E+Y GRG FRVRA Sbjct: 192 NAHELCEACQHLIKNPDAEVDDLLQFIKGPDFPTGGLLVSDAASIREAYATGRGSFRVRA 251 Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314 +W VE++GRG WC+V+TEIPYQVQKSRLIEKIAEL+ A+++PLL+D+RDES ED+R+VL Sbjct: 252 KWEVEDLGRGQWCVVITEIPYQVQKSRLIEKIAELLTARKLPLLDDVRDESTEDIRVVLV 311 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 P++R++D LLMES+F L+D+E RF LNMNVLS G+VP VM + +L+EWL HR+EVL R Sbjct: 312 PRSRNVDATLLMESMFKLTDLENRFSLNMNVLSGGKVPMVMGVKQVLREWLDHRKEVLIR 371 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNL 434 RS +R+ I+ R+E+L+G LIAYLN+DE+I IIR ED K ++ FSLT+ Q +AILN+ Sbjct: 372 RSEYRLGQINHRLEVLEGYLIAYLNLDEVIRIIREEDDAKAELIRTFSLTDVQAEAILNM 431 Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494 RLRSLRKLEE +I+ E D L EK+++ LL S +QW +I+ EI E+ + + T+LG+ Sbjct: 432 RLRSLRKLEELEIRKEHDKLTKEKDELTKLLGSDARQWTRISKEIAEISKAYGPETELGK 491 Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIA 554 RRT E D +QQAMIEKEPITV+IS +GWIR+LK H DLS L FK+GD+LK++ Sbjct: 492 RRTEQAEAPDHDLGDIQQAMIEKEPITVIISEKGWIRALKGHQSDLSTLSFKQGDALKLS 551 Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614 HA TTD+IL+ ST GK +TL A NL GRGHGE I+L+++++ QD+V AFV+ + KL Sbjct: 552 FHAETTDKILVFSTGGKFFTLSAANLPGGRGHGEPIRLMVEMDEAQDVVCAFVHKAGRKL 611 Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFS 674 L+ S++ F+V E +++ANTRKGK L +++ + + V+ GDHVAV+G+NRKLL+F Sbjct: 612 LISSNEARGFVVGEDDVVANTRKGKQVLNLTAPAEATICVEADGDHVAVIGQNRKLLVFP 671 Query: 675 IDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRG 734 + QI +M+RG+GVRLQ Y+DG I+DV FK +GLTW+DS+GRS+NRS DL W G RG Sbjct: 672 MAQIAQMTRGRGVRLQRYRDGDIADVRVFKGEDGLTWVDSSGRSFNRSLEDLTDWRGDRG 731 Query: 735 GVGSLVPKGFPRSGKF 750 G L P GFPRS KF Sbjct: 732 QAGRLPPTGFPRSNKF 747 >gi|118587954|ref|ZP_01545364.1| DNA topoisomerase IV subunit A [Stappia aggregata IAM 12614] gi|118439576|gb|EAV46207.1| DNA topoisomerase IV subunit A [Stappia aggregata IAM 12614] Length = 750 Score = 941 bits (2431), Expect = 0.0, Method: Compositional matrix adjust. Identities = 439/737 (59%), Positives = 572/737 (77%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 +++++L+ ALEERYLAYALSTI RA+PD+RDG KPVHRR+++AM + LD G+ FKK A Sbjct: 12 IESINLKNALEERYLAYALSTIMHRALPDVRDGLKPVHRRLLYAMRLLKLDPGSGFKKCA 71 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGDQ+VYD+LVRLAQ F QRYPLI GQGNFGN+DGD+AAA RYTEARM Sbjct: 72 RVVGDVIGKYHPHGDQAVYDALVRLAQDFAQRYPLIDGQGNFGNVDGDNAAAMRYTEARM 131 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 T A+ +L G+DE+AVDFR+TY+ ED EP+V P FPNLL NG+SGIAVGMATSIP HN Sbjct: 132 TDTAKRLLDGLDENAVDFRETYDGEDKEPIVLPGGFPNLLGNGSSGIAVGMATSIPPHNA 191 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+CEA LI NP +LLEYI GPDFPTGG++V + SI E+Y GRG FRVRARW Sbjct: 192 FELCEACQHLIKNPNAETGELLEYIKGPDFPTGGLLVSDQGSIREAYETGRGSFRVRARW 251 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316 VE++GRG W IVVTEIPYQVQKSRLIEKIAEL+ A+++PLL+D+RDESAED+RIVL P+ Sbjct: 252 EVEDLGRGQWAIVVTEIPYQVQKSRLIEKIAELLTARKLPLLDDVRDESAEDIRIVLVPR 311 Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376 +R++D ++LMES+F L+D+E RF LNMNVLSMG+VP VM L +L+EWL HR+EVL RRS Sbjct: 312 SRNVDANILMESLFKLTDLENRFSLNMNVLSMGKVPMVMGLKQVLREWLDHRKEVLIRRS 371 Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRL 436 +R+ I+ R+E+L+G L+AYLN+DE+I IIR ED+PK ++ F L++ Q +AILN+RL Sbjct: 372 EYRLGQINHRLEVLEGYLVAYLNLDEVIRIIREEDEPKAELMQTFELSDVQAEAILNMRL 431 Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496 RSLRKLEE +I+ E D L AEK+ + LL S +QW +I+ EI ++ +++ T++G+RR Sbjct: 432 RSLRKLEEMEIRKEHDKLSAEKDDLTKLLGSDARQWTKISKEIADISKVYGPETEIGKRR 491 Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALH 556 T E D +QQAMIEKEPITV+IS +GWIR++K H DLS + FK+GD LK++LH Sbjct: 492 TDKSEAPETDLIDIQQAMIEKEPITVIISEKGWIRAMKGHQTDLSGVVFKQGDKLKLSLH 551 Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLV 616 A TTD+ILL ST GK +TL A L GRGHGE I+L+++++ QD+V AFV+ LL+ Sbjct: 552 AETTDKILLFSTGGKFFTLGADRLPGGRGHGEPIRLMVEMDEAQDVVNAFVHKPGRNLLL 611 Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSID 676 +++ F+V E +++ANTRKGK L +S+ + + V+ +GDHVA++GENRKLL+F + Sbjct: 612 ATTEARGFVVSEDDVVANTRKGKQVLNLSAPAEASICVEASGDHVAIIGENRKLLVFPLV 671 Query: 677 QIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGV 736 QIP+M RG+GVRLQ Y+DG ISD+ FK +GLTW DS+GRS+ RS ++L W G+RG Sbjct: 672 QIPQMGRGRGVRLQRYRDGNISDIRVFKGEDGLTWTDSSGRSFTRSLDELADWRGERGQA 731 Query: 737 GSLVPKGFPRSGKFLSS 753 G L P GFPRS KF S Sbjct: 732 GRLPPTGFPRSNKFGPS 748 >gi|254500997|ref|ZP_05113148.1| DNA topoisomerase IV, A subunit [Labrenzia alexandrii DFL-11] gi|222437068|gb|EEE43747.1| DNA topoisomerase IV, A subunit [Labrenzia alexandrii DFL-11] Length = 750 Score = 931 bits (2407), Expect = 0.0, Method: Compositional matrix adjust. Identities = 436/734 (59%), Positives = 567/734 (77%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 ++ ++L+ ALEERYLAYALSTI RA+PD+RDG KPVHRR+++AM + LD G FKK A Sbjct: 12 IEGINLKDALEERYLAYALSTIMHRALPDVRDGLKPVHRRLLYAMRLLKLDPGQGFKKCA 71 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGDQ+VYD+LVRLAQ F QRYPLI GQGNFGN+DGD+AAA RYTEARM Sbjct: 72 RVVGDVIGKYHPHGDQAVYDALVRLAQDFAQRYPLIDGQGNFGNVDGDNAAAMRYTEARM 131 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 T A+ +L G+DEDAVD+R+TY+ ED EP+V P FPNLL NG+SGIAVGMATSIP HN Sbjct: 132 TDTAKRLLDGLDEDAVDWRETYDGEDKEPIVLPGGFPNLLGNGSSGIAVGMATSIPPHNA 191 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+C A LI NP+ +++LLE+I GPDFPTGG++V + SI E+Y GRG FRVRARW Sbjct: 192 FELCNACQHLIKNPDAEVDELLEHIKGPDFPTGGLLVSDQGSIREAYATGRGSFRVRARW 251 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316 VEE+GRG W IVVTEIPYQVQKSRLIEKIAEL+IA+++PLL+D+RDESAED+R+VL P+ Sbjct: 252 EVEELGRGQWAIVVTEIPYQVQKSRLIEKIAELLIARKLPLLDDVRDESAEDIRVVLVPR 311 Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376 ++++D ++LMES+F L+D+E RF LNMNVLSMG+VP VM + +L+EWL HR+ VL RRS Sbjct: 312 SKNVDANILMESLFKLTDLENRFSLNMNVLSMGKVPMVMGVKQVLREWLDHRKVVLVRRS 371 Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRL 436 R+ I+ R+E+L G LIAYLN+DE+I IIR ED K ++ F LT+ Q +AILN+RL Sbjct: 372 EHRLGQINHRLEVLAGYLIAYLNLDEVIRIIREEDDAKASLIRTFELTDVQAEAILNMRL 431 Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496 RSLRKLEE++I+ E D L EK+++ LL S +QW +I+ EI E+ +++ T++G+RR Sbjct: 432 RSLRKLEEFEIRKEHDKLTDEKDQLTKLLGSDARQWTKISKEIGEIAKVYGPETEIGKRR 491 Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALH 556 T E AD +QQAMIEKEPITV+IS +GWIR+LK H DLS+L FK+GD LK++ H Sbjct: 492 TDKAEAPEADLVDIQQAMIEKEPITVIISEKGWIRALKGHQADLSSLSFKQGDKLKLSFH 551 Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLV 616 A TTD+IL+ ST GK +TL A L GRGHGE I+L+++++ QD+V+AFV+ LL+ Sbjct: 552 AETTDKILVFSTGGKFFTLGADRLPGGRGHGEPIRLMVEMDEAQDVVSAFVHKPGRNLLL 611 Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSID 676 +++ F+V E +++ANTRKGK L +++ + L V TGDHVA++GENRKLL+F + Sbjct: 612 SNNEARGFVVSEDDVVANTRKGKQVLNLTAPAEAALCVDATGDHVAIIGENRKLLVFPLA 671 Query: 677 QIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGV 736 QI +M RG+GVRLQ Y+DG +SD+ FK +GLTW DS+GRS+ RS +L WLG RG Sbjct: 672 QIAQMGRGRGVRLQRYRDGNVSDIRVFKGEDGLTWTDSSGRSFTRSLEELSEWLGDRGQA 731 Query: 737 GSLVPKGFPRSGKF 750 G L P GFPRS KF Sbjct: 732 GRLPPTGFPRSNKF 745 >gi|90419529|ref|ZP_01227439.1| DNA topoisomerase IV, A subunit [Aurantimonas manganoxydans SI85-9A1] gi|90336466|gb|EAS50207.1| DNA topoisomerase IV, A subunit [Aurantimonas manganoxydans SI85-9A1] Length = 750 Score = 931 bits (2407), Expect = 0.0, Method: Compositional matrix adjust. Identities = 445/736 (60%), Positives = 571/736 (77%), Gaps = 1/736 (0%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 +++ + L+ ALEERYLAYALSTI RA+PD+RDG KPVHRRI+HAM + LD G +KK Sbjct: 13 DIEPIDLKAALEERYLAYALSTIMGRALPDVRDGLKPVHRRIVHAMRILRLDPGQGYKKC 72 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 ARIVG+V+GK HPHGD S+YD+LVRL+Q F RYPLI GQGNFGN+DGDS AA RYTEAR Sbjct: 73 ARIVGDVMGKFHPHGDASIYDALVRLSQDFAIRYPLIDGQGNFGNVDGDSPAAMRYTEAR 132 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 MT VA L+L+G+DEDAVDF+ TYNEE+ EP+V P FPNLLANG+SGIAVGMATSIP HN Sbjct: 133 MTDVATLLLRGIDEDAVDFKKTYNEEEEEPIVLPGAFPNLLANGSSGIAVGMATSIPPHN 192 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 E+C+AAL LI+NP+ + + LL ++ GPD PTGG+IV+++ I E+Y GRG FRVRAR Sbjct: 193 AAELCDAALKLIENPDATTDALLRFVQGPDLPTGGVIVDNQAQIREAYDTGRGSFRVRAR 252 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315 W E+ GRG + +VVTEIPYQVQKSRLIEKIAEL++A+++PLL DIRDESAEDVRIV+ P Sbjct: 253 WETEDQGRGGYVVVVTEIPYQVQKSRLIEKIAELLLARKLPLLGDIRDESAEDVRIVIEP 312 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 K+R++DP+LLMES+F L+D+E+R PLNMNVLS G+VP+VM L +L EWLAH+R+VL RR Sbjct: 313 KSRTVDPELLMESLFRLTDLESRIPLNMNVLSGGKVPRVMSLKDVLAEWLAHQRDVLVRR 372 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435 S FR+ I+RR+EIL G LIA+LN+DE+I IIR ED+PK ++ F LT+ Q +AILN+R Sbjct: 373 SRFRLAQIERRLEILSGYLIAFLNLDEVIRIIREEDEPKTELMRTFELTDTQAEAILNMR 432 Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495 LRSLRKLEE+++K E D L EK + ++LL S ++QW IA E+REV+E +SK T +GRR Sbjct: 433 LRSLRKLEEFELKREFDTLTGEKAEKEALLASDERQWAGIAAEVREVRETYSKKTKIGRR 492 Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555 RT F + + A+IEKEPITVV+S +G++R +K H D S+L F+EGD L++A Sbjct: 493 RTMFADAPNRALDDITVALIEKEPITVVLSKKGFLRGMKGHLADFSSLAFREGDGLQLAF 552 Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615 HA TTD++L LST G+A+T A L GRG GE I+L +L +QDI AFV D + L Sbjct: 553 HAMTTDKLLFLSTGGRAFTHGADKLPGGRGQGEPIRLAFELEDDQDIALAFVADPERRRL 612 Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV-TGDHVAVVGENRKLLIFS 674 +VSS GN F+ E++++ANTRKGK + V+ + K+ L V GDHVA+VGENRKLL+F Sbjct: 613 LVSSDGNGFVASEADMLANTRKGKQLMNVAGKTKLALAAPVGAGDHVAIVGENRKLLVFP 672 Query: 675 IDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRG 734 + Q+P+M+RGKGVRLQ YKDGG+SD F + +GLTW DSAGRS+ RSE +LL W G R Sbjct: 673 LVQVPQMTRGKGVRLQRYKDGGLSDARVFAMADGLTWTDSAGRSFTRSETELLEWRGDRA 732 Query: 735 GVGSLVPKGFPRSGKF 750 G LVPKGFP++ +F Sbjct: 733 QAGRLVPKGFPKTNRF 748 >gi|114704845|ref|ZP_01437753.1| DNA topoisomerase IV subunit A [Fulvimarina pelagi HTCC2506] gi|114539630|gb|EAU42750.1| DNA topoisomerase IV subunit A [Fulvimarina pelagi HTCC2506] Length = 750 Score = 910 bits (2353), Expect = 0.0, Method: Compositional matrix adjust. Identities = 427/735 (58%), Positives = 563/735 (76%), Gaps = 1/735 (0%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 ++ V LR ALEERYLAYALSTI RA+PD+RDG KPVHRRI+HAM + LD G A+KK A Sbjct: 14 IQPVDLREALEERYLAYALSTIMGRALPDVRDGLKPVHRRIVHAMRVLRLDPGQAYKKCA 73 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 RIVG+V+G+ HPHGD ++YD+LVRLAQ F RYPL+ GQGNFGN+DGDSAAA RYTEARM Sbjct: 74 RIVGDVMGRFHPHGDAAIYDALVRLAQDFSVRYPLVDGQGNFGNVDGDSAAAMRYTEARM 133 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 T+VA L+L+G+DE+AVDFR TYNEED EPVV P FPNLLANG+SGIAVGMAT+IP HN Sbjct: 134 TEVATLLLRGIDENAVDFRPTYNEEDEEPVVLPGAFPNLLANGSSGIAVGMATNIPPHNA 193 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+C+AAL +I+NP+ ++++LL I GPDFPTGG+IV++R +I ++Y GRG FRVRARW Sbjct: 194 AELCDAALKIIENPDATVDQLLRSIEGPDFPTGGVIVDNRATIRQAYETGRGSFRVRARW 253 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316 E+ RG W +VV EIPYQVQKSRLIEKIAEL+ A+++PLL DIRDESAED+RIVL PK Sbjct: 254 EREDATRGQWFVVVHEIPYQVQKSRLIEKIAELLQARKLPLLADIRDESAEDIRIVLEPK 313 Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376 ++++DP++LMES+F L+D+E+R PLNMNVLS G+VP+V+ L +L EWLAH+REVL RR+ Sbjct: 314 SKTVDPEILMESLFRLTDLESRIPLNMNVLSGGKVPKVLSLKEVLAEWLAHQREVLERRA 373 Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRL 436 R+ I+RR+EIL G LI +LNID++I IIR ED+PK ++ F+L++ Q +A+LN+RL Sbjct: 374 RHRLAQIERRLEILAGYLIVFLNIDDVIRIIREEDEPKQELMRFFTLSDVQAEAVLNMRL 433 Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496 RSLRKLEE++++ E D L EK + ++LL S ++QW+ +A E+R V+E FSK T LG+RR Sbjct: 434 RSLRKLEEFELRREFDQLTVEKAEKEALLGSTEKQWSAVAEEVRAVRETFSKKTKLGKRR 493 Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALH 556 T F + D + A+IEKE +T+V+S +G++R +K H D S L F+EGD L IA H Sbjct: 494 TRFADAPDHDIGDITTALIEKESVTIVLSKKGFLRGMKGHLADFSNLTFREGDGLNIAFH 553 Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLV 616 A TTD++L +S G+ +T+ A L GRG G+ I+L DL DI AF + + L+ Sbjct: 554 AMTTDKLLFVSKHGRVFTMQADKLPGGRGQGDPIRLAFDLEDKDDIAAAFTAEPERRRLM 613 Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV-TGDHVAVVGENRKLLIFSI 675 VSS+G F+ E ++I+ TRKGK + V ++L ++ GD VA+VGENRKLL+F + Sbjct: 614 VSSEGTGFVATEGDMISGTRKGKQLMNVGKGSVVELAQEIGEGDTVAIVGENRKLLVFPL 673 Query: 676 DQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGG 735 Q+P+M+RGKGVRLQ YKDGG+SD FK+ EGLTW DSAGR++ RS+ +L+ W G R Sbjct: 674 SQVPQMARGKGVRLQRYKDGGVSDAKVFKLSEGLTWSDSAGRAFLRSDEELMEWKGDRAQ 733 Query: 736 VGSLVPKGFPRSGKF 750 G LVPKGFP++ KF Sbjct: 734 AGRLVPKGFPKTNKF 748 >gi|304391955|ref|ZP_07373897.1| DNA topoisomerase IV, A subunit [Ahrensia sp. R2A130] gi|303296184|gb|EFL90542.1| DNA topoisomerase IV, A subunit [Ahrensia sp. R2A130] Length = 765 Score = 907 bits (2345), Expect = 0.0, Method: Compositional matrix adjust. Identities = 433/739 (58%), Positives = 565/739 (76%), Gaps = 5/739 (0%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 ++ + L+ ALEERYLAYALSTI RA+PD+RDG KPVHRRI+HAM + L+ A F K A Sbjct: 25 IEPIDLKTALEERYLAYALSTIMGRALPDVRDGMKPVHRRILHAMRLLRLNPEAGFAKCA 84 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 RIVG+V+GK HPHGD S+YD+LVRL+Q F RYPL+ GQGNFGN+DGD+ AA RYTEARM Sbjct: 85 RIVGDVMGKFHPHGDASIYDALVRLSQSFAVRYPLVDGQGNFGNVDGDNPAAMRYTEARM 144 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 T A +L+G+ EDAVDFR TYNEED EP+V P+ FPNLLANG++GIAVGMAT+IP HNV Sbjct: 145 TPAAMSLLEGITEDAVDFRATYNEEDEEPIVLPAAFPNLLANGSAGIAVGMATNIPPHNV 204 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 +E+C+AAL LI P +KL+E++ GPDFPTGGIIVES S++E+Y+ G+GGFR+RARW Sbjct: 205 EELCDAALHLIKFPNAGFDKLMEFVPGPDFPTGGIIVESPASMLETYKTGKGGFRLRARW 264 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316 E++GRG W IVVTEIPYQV KS+LIEK AEL++AK++PLL+DI DESAED+R+VL PK Sbjct: 265 EKEDLGRGQWQIVVTEIPYQVGKSKLIEKTAELLLAKKLPLLDDINDESAEDIRVVLTPK 324 Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376 +RS+DP LLME +F L+D+ETRFPLNMNVL G+VP+VM + +L+ WL HR+ VL RR+ Sbjct: 325 SRSIDPALLMEQLFRLTDLETRFPLNMNVLDGGKVPKVMSIRDVLRAWLEHRKVVLVRRN 384 Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRL 436 R+ I++R+E+L G +IAYLNIDE+I IIR ED PK +++RF LT+ Q +A+LNLRL Sbjct: 385 RNRLAQIEKRLEVLGGYIIAYLNIDEVIRIIRTEDHPKQALIARFELTDAQAEAVLNLRL 444 Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496 R+L KLEE +++ E +L EK I+ LL S + QW IA E+ + K+ FSK+TDLG RR Sbjct: 445 RALHKLEEMELRKEFSDLKEEKASIEGLLASDELQWKTIAWEVGQTKKKFSKATDLGARR 504 Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALH 556 TTF D + AMIEKEP+T+V+S +GWIR+LK H+ D +AL FKEGD L A H Sbjct: 505 TTFETAMEVDLDAVAAAMIEKEPVTIVVSQKGWIRALKGHAPDFAALTFKEGDKLLTAFH 564 Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLV 616 A TTD++L+ +T GK YTL A L GRGHGE +++++D++++ DI++ F++ K ++ Sbjct: 565 AETTDKLLMFTTAGKFYTLAADKLPGGRGHGEPVRIMVDMDNDADILSLFIHKPGRKRML 624 Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV-----TGDHVAVVGENRKLL 671 VSS GN F+V E+++IANTRKGK L V+ + KL GDHVAVVGENRKLL Sbjct: 625 VSSLGNGFVVAETDLIANTRKGKQSLNVAMPVEAKLCPATDHEGEAGDHVAVVGENRKLL 684 Query: 672 IFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLG 731 IF +DQ+PEM RGKGVRLQ YKDGG+ D FK+ +GL+W DSAGR++ R+ ++L ++ Sbjct: 685 IFPLDQVPEMGRGKGVRLQRYKDGGVKDARLFKLADGLSWTDSAGRTHTRTADELKEYIA 744 Query: 732 KRGGVGSLVPKGFPRSGKF 750 R G +VPKGFP+SG F Sbjct: 745 DRAQAGRMVPKGFPKSGTF 763 >gi|254469959|ref|ZP_05083364.1| DNA topoisomerase IV, A subunit [Pseudovibrio sp. JE062] gi|211961794|gb|EEA96989.1| DNA topoisomerase IV, A subunit [Pseudovibrio sp. JE062] Length = 750 Score = 894 bits (2309), Expect = 0.0, Method: Compositional matrix adjust. Identities = 424/740 (57%), Positives = 555/740 (75%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 ++ + ++L+ ALEERYL+YAL+TI RA+PD+RDG KPVHRRI++ M + LD FK Sbjct: 8 QDGPETINLKDALEERYLSYALTTIMHRALPDVRDGLKPVHRRILYGMRLLKLDPNQGFK 67 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 K AR+VG+V+GK HPHGD ++YD+LVRLAQ F RYP++ GQGNFGNIDGDSAAA RYTE Sbjct: 68 KCARVVGDVMGKYHPHGDAAIYDALVRLAQDFSVRYPMVDGQGNFGNIDGDSAAAMRYTE 127 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 ARMT VA IL G++E+AVDFR+TY+ DSEPVV P FPNLLANG++GIAVGMATSIP Sbjct: 128 ARMTDVATRILDGLNENAVDFRETYDGLDSEPVVLPGSFPNLLANGSTGIAVGMATSIPP 187 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN E+C A LI P+ +E+LLE+I GPDFPTGG IV + SI+E+Y+ GRG FR R Sbjct: 188 HNAHELCNACQLLISKPDAEVEELLEHIKGPDFPTGGTIVNDKGSILEAYKTGRGSFRTR 247 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313 A+W EE RG++ IVVTEIPY VQKSRLIEKIAEL++A+++PLL+DIRDESAEDVR+VL Sbjct: 248 AKWHKEEGQRGTYNIVVTEIPYLVQKSRLIEKIAELLMARKLPLLDDIRDESAEDVRVVL 307 Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373 P+N+++DP+LLM S+F L+D+E RF LNMNVLS G VP+VM L +L+EWL H++EVL Sbjct: 308 VPRNKNVDPELLMASLFKLTDLENRFSLNMNVLSKGVVPKVMSLKEVLQEWLEHQKEVLV 367 Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILN 433 RRS+ R+ I+ R+E+L+G L+AYLNIDE+I IIR ED K ++ F LTE Q +AILN Sbjct: 368 RRSNHRLDQINHRLEVLEGYLVAYLNIDEVIRIIREEDDAKASLIKAFDLTEVQAEAILN 427 Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493 +RLRSLRKLEE++IK E D L EK +++LL S K+QWN+++ ++ E+ + + T++G Sbjct: 428 MRLRSLRKLEEFEIKKEHDKLSKEKAGLEALLASDKKQWNRVSKQVGEIGKAYGPETEIG 487 Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKI 553 RRT F D + QAMIEKEPITVVIS +GWIR+LK H D++ L FK+GD L + Sbjct: 488 ARRTDFGTADDRDLEEINQAMIEKEPITVVISEKGWIRTLKGHVQDVTNLAFKQGDQLHL 547 Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613 + HA TT +IL+ ++ GK YTL A L GRGHGE I+L++D++ Q+I++AFV+D K Sbjct: 548 SFHAETTSKILIFTSGGKFYTLGADKLPGGRGHGEPIRLMLDMDETQEIISAFVHDPERK 607 Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIF 673 LL+ + F+V+E ++IANTRKGK L V++ K L V GD+VAV+G NRKLL F Sbjct: 608 LLMSTDGAYGFVVQEKDVIANTRKGKQVLNVTAPAKAVLCVPAIGDYVAVIGHNRKLLTF 667 Query: 674 SIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKR 733 + QI M+RG+GVRLQ Y+DGGISD+ F EGLTW D++GR + R+ ++ W G R Sbjct: 668 PLAQIAVMTRGRGVRLQRYRDGGISDIKTFDSEEGLTWTDASGRIFKRTLEEMQDWRGDR 727 Query: 734 GGVGSLVPKGFPRSGKFLSS 753 G G L P GFPR+ KF S Sbjct: 728 GQAGRLPPNGFPRTNKFDGS 747 >gi|154253317|ref|YP_001414141.1| DNA topoisomerase IV subunit A [Parvibaculum lavamentivorans DS-1] gi|154157267|gb|ABS64484.1| DNA topoisomerase IV, A subunit [Parvibaculum lavamentivorans DS-1] Length = 748 Score = 892 bits (2306), Expect = 0.0, Method: Compositional matrix adjust. Identities = 426/731 (58%), Positives = 551/731 (75%), Gaps = 3/731 (0%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 ++LR ALEERYLAYALSTI RA+PD+RDG KPVHRR++ AM ++ LD G+ FKKSAR+V Sbjct: 14 INLREALEERYLAYALSTIMHRALPDVRDGLKPVHRRVLFAMRQLKLDPGSGFKKSARVV 73 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIG+ HPHGDQSVYD+LVRLAQ F RYPL+ GQGNFGN+DGD+AAA RYTEAR+T+V Sbjct: 74 GDVIGRYHPHGDQSVYDALVRLAQSFSVRYPLVDGQGNFGNVDGDNAAAMRYTEARLTEV 133 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A +L G+DED VDFRDTY+ EDSEP V P FP LLANG +GIAVGMATSIP HN E+ Sbjct: 134 AAQLLNGIDEDTVDFRDTYDGEDSEPTVLPGAFPQLLANGAAGIAVGMATSIPPHNAAEL 193 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 C+AAL LI +P EKL+E++ GPDFPTGGIIVE R +++E+Y GRGGFRVRARW E Sbjct: 194 CDAALYLIKHPNAKTEKLVEFVKGPDFPTGGIIVEPRAAMLEAYETGRGGFRVRARWEQE 253 Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319 E+ RG + IVVTEIPYQVQKS+L+EKIAEL+ A+++PLLED+RDESAE++R+VL PK R+ Sbjct: 254 ELPRGGYQIVVTEIPYQVQKSKLVEKIAELLQARKLPLLEDVRDESAEEIRLVLVPKART 313 Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379 +DP LMES+F +++E RFPLNMNVLS G+VP VM L G+L+ WL HR+ VL RRS+FR Sbjct: 314 VDPAHLMESLFRSTELENRFPLNMNVLSAGQVPGVMSLRGVLRAWLEHRKVVLVRRSNFR 373 Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSL 439 + I++R+E+L+G L AYLN+DE+I IIR ED+PKP ++ +F LT+NQ +AILN+RLRSL Sbjct: 374 LDKIEKRLEVLEGYLKAYLNLDEVIRIIRQEDEPKPALIKKFKLTDNQAEAILNMRLRSL 433 Query: 440 RKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTF 499 RKLEE +I+ E L AE++ + SL+ S +QW ++A EI+EVK +F T LG RRT F Sbjct: 434 RKLEEMEIRGEHKELSAEQKALKSLVKSEDKQWARVADEIKEVKALFGPKTALGARRTKF 493 Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHT 559 + + + +AMIEKEP+TVV S +GWIR++K H + + FKEGD+ + LHA T Sbjct: 494 SDAPAIEYVPM-EAMIEKEPVTVVCSKKGWIRTMKGHVGPDTEIKFKEGDAGRFLLHAET 552 Query: 560 TDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSS 619 TD++LL +TDG+ YTL L GRG+GE ++L+IDL+ + ++V FV+ KL+V S Sbjct: 553 TDKVLLFATDGRFYTLDVTKLPGGRGNGEPVRLMIDLDESHEVVELFVHQPGRKLIVASH 612 Query: 620 KGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIP 679 +GN FIV E E++A R GK L V+ +++ V G HVAV+G+NRKLLIF + ++ Sbjct: 613 EGNGFIVPEDEVVAMRRAGKQVLNVTGKDEAIACAPVQGTHVAVIGDNRKLLIFPVKEVN 672 Query: 680 EMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSL 739 EM+RGKGVRLQ Y DGG++DV F + EGLT D +GR N DL W+G R G L Sbjct: 673 EMTRGKGVRLQRYADGGLADVKTFNLKEGLTVYDKSGRQRNFP--DLKDWVGARAQAGRL 730 Query: 740 VPKGFPRSGKF 750 PKGF KF Sbjct: 731 PPKGFTSERKF 741 >gi|90424143|ref|YP_532513.1| DNA topoisomerase IV subunit A [Rhodopseudomonas palustris BisB18] gi|90106157|gb|ABD88194.1| DNA topoisomerase IV subunit A [Rhodopseudomonas palustris BisB18] Length = 751 Score = 891 bits (2302), Expect = 0.0, Method: Compositional matrix adjust. Identities = 416/731 (56%), Positives = 546/731 (74%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 V LR ALEERYLAYALSTI RA+PD RDG KPVHRRI++ M + LD G FKKSA+IV Sbjct: 16 VQLREALEERYLAYALSTIMHRALPDARDGLKPVHRRILYGMRLLRLDPGTPFKKSAKIV 75 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+V+G HPHGDQS+YD+LVRLAQ F RYPL+ GQGNFGNIDGD+AAAYRYTEARMT V Sbjct: 76 GDVMGSFHPHGDQSIYDALVRLAQDFSSRYPLVDGQGNFGNIDGDNAAAYRYTEARMTDV 135 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A L+L G+DED V FR Y+ + EP+V P FPNLLANG GIAVGMAT+IP HN E+ Sbjct: 136 ARLLLDGIDEDGVAFRANYDGQSKEPIVLPGGFPNLLANGAQGIAVGMATAIPPHNAAEL 195 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 C+AAL LI+ P+ + LL+++ GPDFPTGG+I++SRESI E+Y GRG FR RA+W E Sbjct: 196 CDAALHLIEKPDAKSKTLLKWVKGPDFPTGGVIIDSRESIAEAYTTGRGSFRTRAKWHQE 255 Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319 + RG+W + +TEIP+ VQKSRLIEKIAEL+ K++PL+ D+RDESAED+R+V+ PK+R+ Sbjct: 256 DGARGTWVVAITEIPWLVQKSRLIEKIAELLNEKKLPLVGDVRDESAEDIRVVIEPKSRA 315 Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379 +DP+LLMES+F L+++E++ PLN+NVL GR+P+V+ L L+EWL H R+VL RR S+R Sbjct: 316 VDPELLMESLFRLTELESKIPLNLNVLVKGRIPKVLGLAECLREWLDHLRDVLLRRCSYR 375 Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSL 439 I+ R+E+L G LIAYLNID++I IIR ED+PKPV++ F+LT+ Q +AILN+RLRSL Sbjct: 376 KGQIEHRLEVLGGYLIAYLNIDKVIKIIRTEDEPKPVLMKAFNLTDIQAEAILNMRLRSL 435 Query: 440 RKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTF 499 RKLEE++I++E NL AE + I+++L S +QW ++A ++R+V+E+F T LG+RRT F Sbjct: 436 RKLEEFEIRTEDKNLRAELKGINAILKSETEQWAKVAEQVRKVREMFGPKTALGKRRTMF 495 Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHT 559 + D A +++A +E+EP+TVVIS++GW+R+LK H DLS L FK D L A A T Sbjct: 496 ADAPEHDLAAIEEAFVEREPVTVVISDKGWVRTLKGHVADLSGLTFKTDDKLGQAFFAET 555 Query: 560 TDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSS 619 T ++LL +T+G+ Y L L GRGHGE I++ IDL+ + IV FV+ K LV S Sbjct: 556 TSKLLLFATNGRFYALDVAKLPGGRGHGEPIRMFIDLDQDAAIVALFVHTGGRKFLVASH 615 Query: 620 KGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIP 679 G FIV E + + NTRKGK L V + + V V+GD VAV+GENRKLLIF++DQ+P Sbjct: 616 DGQGFIVNEDDCVGNTRKGKQILNVEMPNEARAVCTVSGDSVAVIGENRKLLIFALDQVP 675 Query: 680 EMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSL 739 EM+RG+GVRLQ YKDGG+SD+ F +G +W DSAGR ++ S +L W G R G + Sbjct: 676 EMARGRGVRLQKYKDGGLSDIATFTAKDGFSWRDSAGREFSASIKELAEWRGNRADAGRM 735 Query: 740 VPKGFPRSGKF 750 PKGFP+S KF Sbjct: 736 PPKGFPKSNKF 746 >gi|115525023|ref|YP_781934.1| DNA topoisomerase IV subunit A [Rhodopseudomonas palustris BisA53] gi|115518970|gb|ABJ06954.1| DNA topoisomerase IV subunit A [Rhodopseudomonas palustris BisA53] Length = 753 Score = 888 bits (2295), Expect = 0.0, Method: Compositional matrix adjust. Identities = 412/736 (55%), Positives = 553/736 (75%), Gaps = 2/736 (0%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + V LR ALEERYLAYALSTI RA+PD RDG KPVHRRI++ M + LD G FKKSA Sbjct: 13 IHEVQLRDALEERYLAYALSTIMHRALPDARDGLKPVHRRILYGMRLLRLDPGTPFKKSA 72 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 +IVG+V+G HPHGDQS+YD+LVRLAQ F RYPL+ GQGNFGNIDGD+AAAYRYTEARM Sbjct: 73 KIVGDVMGSFHPHGDQSIYDALVRLAQDFSSRYPLVDGQGNFGNIDGDNAAAYRYTEARM 132 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 T VA L+L+G+DED V FR Y+ + EP+V P FPNLLANG GIAVGMAT+IP HN Sbjct: 133 TDVARLLLEGIDEDGVAFRANYDGQSKEPIVLPGGFPNLLANGAQGIAVGMATAIPPHNA 192 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+C+AAL LID P+ + LL+++ GPDFPTGG+I++SRESI E+Y GRG FR RA+W Sbjct: 193 AELCDAALHLIDKPDAKSKALLKWVKGPDFPTGGVIIDSRESIAEAYSTGRGAFRTRAKW 252 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316 EE RG+W +V+TEIP+ VQKSRLIEKIAEL+ K++PL+ D+RDESAED+R+V+ PK Sbjct: 253 SQEEGARGTWVVVITEIPWLVQKSRLIEKIAELLNEKKLPLVGDVRDESAEDIRLVIEPK 312 Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376 +R++DP+LLMES+F L+++E+R PLN+NVL GR+P+V+ L L+EWL H R+VL RRS Sbjct: 313 SRTVDPELLMESLFRLTELESRIPLNLNVLVKGRIPKVLGLAECLREWLDHLRDVLLRRS 372 Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRL 436 ++R I+ R+E+L G LIAYLNID++I IIR ED+PKPV++ F LT+ Q +AILN+RL Sbjct: 373 NYRKAQIEHRLEVLGGYLIAYLNIDKVIKIIRTEDEPKPVLMRTFKLTDIQAEAILNMRL 432 Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496 RSLRKLEE++I++E NL AE + I+++L S K+QW ++ ++R+V+++F T LG+RR Sbjct: 433 RSLRKLEEFEIRTEDKNLRAELKGINAILASEKEQWAKVGEQVRKVRDLFGPKTALGKRR 492 Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALH 556 T+F + D A +++A +E+EP+T+V+S++GW+R+LK H DLS+L FK+ D L Sbjct: 493 TSFADAPEHDLAAIEEAFVEREPVTIVVSDKGWVRTLKGHVADLSSLAFKQDDKLGTTFF 552 Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLV 616 A TT +++L +T+G+ Y+L L GRGHGE I++ IDL+ + IV+ FV + LV Sbjct: 553 AETTSKLMLFATNGRFYSLEVAKLPGGRGHGEPIRMFIDLDQDAAIVSLFVSTGDRRFLV 612 Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVS--SEEKMKLVVKVTGDHVAVVGENRKLLIFS 674 S G F+V E++ ++NTRKGK L V +E + VV D VAV+GENRK+L+F Sbjct: 613 ASHDGQGFVVGEADCVSNTRKGKQVLNVEMPNEARALTVVGEGADTVAVIGENRKMLLFP 672 Query: 675 IDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRG 734 +DQ+PEM++G+GVRLQ YKDGG+SD++ F GLTW DSAGR ++ + +L W G R Sbjct: 673 LDQVPEMAKGRGVRLQKYKDGGLSDIVAFNAKAGLTWRDSAGREFSATIKELAEWRGNRA 732 Query: 735 GVGSLVPKGFPRSGKF 750 G L PKGFP+S KF Sbjct: 733 DAGRLPPKGFPKSNKF 748 >gi|91977126|ref|YP_569785.1| DNA topoisomerase IV subunit A [Rhodopseudomonas palustris BisB5] gi|91683582|gb|ABE39884.1| DNA topoisomerase IV subunit A [Rhodopseudomonas palustris BisB5] Length = 753 Score = 888 bits (2294), Expect = 0.0, Method: Compositional matrix adjust. Identities = 418/736 (56%), Positives = 548/736 (74%), Gaps = 2/736 (0%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + V LR ALEERYLAYALSTI RA+PD RDG KPVHRRI++ M + LD G FKKSA Sbjct: 13 IHDVQLREALEERYLAYALSTIMHRALPDARDGLKPVHRRILYGMRLLRLDPGTPFKKSA 72 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 +IVG+V+G HPHGDQS+YD+LVRLAQ F RYPL+ GQGNFGNIDGD+ AAYRYTEARM Sbjct: 73 KIVGDVMGSFHPHGDQSIYDALVRLAQDFSSRYPLVDGQGNFGNIDGDNPAAYRYTEARM 132 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 T VA L+L G+DED V FR Y+ + EP+V P FPNLLANG GIAVGMAT+IP HN Sbjct: 133 TDVARLLLDGIDEDGVAFRPNYDGQSKEPMVLPGGFPNLLANGAQGIAVGMATAIPPHNA 192 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+C+AAL LI+ P+ + LL ++ GPDFPTGGI+++S+ESI E+Y GRG FR RA+W Sbjct: 193 AELCDAALHLIEKPDAKSKALLRFVKGPDFPTGGIVIDSKESIAEAYTTGRGAFRTRAKW 252 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316 EE RG+W +VVTEIP+ VQKSRLIEKIAEL+ K++PL+ DIRDESAEDVR+V+ PK Sbjct: 253 AQEEGARGTWVVVVTEIPWLVQKSRLIEKIAELLNEKKLPLVGDIRDESAEDVRVVIEPK 312 Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376 +R++DP+L+MES+F L+++E+R PLN+NVL GR+P+V+ L L+EWL H R+VL RRS Sbjct: 313 SRTVDPELMMESLFRLTELESRIPLNLNVLVKGRIPKVLGLAECLREWLDHLRDVLLRRS 372 Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRL 436 ++R I+ R+E+L G LIAYLNID++I IIRNED+PKPV++ FSLT+ Q +AILN+RL Sbjct: 373 NYRKAQIEHRLEVLGGYLIAYLNIDKVIKIIRNEDEPKPVLMKTFSLTDIQAEAILNMRL 432 Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496 RSLRKLEE++I++E NL AE + I+++L S +QW ++ ++R+V+E+F T LG+RR Sbjct: 433 RSLRKLEEFEIRTEDKNLRAELKGINAILKSETEQWAKVGEQVRKVREMFGPKTPLGKRR 492 Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALH 556 T F + D A +++A +E+EP+TVVIS++GW+R+LK H DLS L+FK+ D L + Sbjct: 493 TQFADAPEHDLAAIEEAFVEREPVTVVISDKGWVRTLKGHVEDLSGLNFKQDDRLGQSFF 552 Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLV 616 A TT ++LLL+T+G+ Y+L L GRGHGE I++ ID+ + IV FVY K L+ Sbjct: 553 AETTSKLLLLATNGRFYSLDVAKLPGGRGHGEPIRMFIDMEQDAAIVAVFVYKGGRKFLI 612 Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVS--SEEKMKLVVKVTGDHVAVVGENRKLLIFS 674 S G FIV E + + TRKGK + V +E + VV D VAV+GENRK+LIF Sbjct: 613 ASHDGQGFIVGEDDCVGTTRKGKQIINVDMPNEARALTVVGEGSDSVAVIGENRKMLIFP 672 Query: 675 IDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRG 734 +DQ+PEM+RG+GVRLQ YKDGG+SD+ F +GL+W DSAGR ++ + DL W G R Sbjct: 673 MDQVPEMTRGRGVRLQKYKDGGLSDIATFVSKQGLSWRDSAGREFSATMKDLAEWRGNRA 732 Query: 735 GVGSLVPKGFPRSGKF 750 G L PKGFP+S KF Sbjct: 733 DAGRLPPKGFPKSNKF 748 >gi|312114153|ref|YP_004011749.1| DNA topoisomerase IV, subunit alpha [Rhodomicrobium vannielii ATCC 17100] gi|311219282|gb|ADP70650.1| DNA topoisomerase IV, A subunit [Rhodomicrobium vannielii ATCC 17100] Length = 750 Score = 887 bits (2293), Expect = 0.0, Method: Compositional matrix adjust. Identities = 425/745 (57%), Positives = 562/745 (75%), Gaps = 3/745 (0%) Query: 6 ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65 +++ L ++ + L+ ALEERYLAYALSTI RA+PD+RDG KPVHRR++ AM ++ Sbjct: 1 MADETILAPPPIEPIRLKDALEERYLAYALSTIMHRALPDVRDGLKPVHRRLLFAMRQLK 60 Query: 66 LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125 LD FKK AR+VG+VIGK HPHGDQSVYD+LVRLAQ F QRYPL+ GQGNFGNIDGD+ Sbjct: 61 LDPAGGFKKCARVVGDVIGKYHPHGDQSVYDALVRLAQSFSQRYPLVDGQGNFGNIDGDN 120 Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185 AAA RYTEARMT +A +L G+DED VDFR+TY+ E+ EPVV P+ FPNLLANG+SGIAV Sbjct: 121 AAAMRYTEARMTAIAAALLDGIDEDTVDFRETYDGEEEEPVVLPAAFPNLLANGSSGIAV 180 Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245 GMATSIP HN E+C+AAL LI +P+ S+E LL Y+ GPDFPTGG++V+ +VE+YR Sbjct: 181 GMATSIPPHNADEVCDAALYLIKHPKASVETLLTYLPGPDFPTGGVLVDDTAGLVEAYRT 240 Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305 GRG FR+RARW E+ GRG + I+VTEIPY VQKSRLIEK+A+L+ AK++PLL DI DES Sbjct: 241 GRGSFRLRARWHTEDTGRGGYQIIVTEIPYGVQKSRLIEKMADLLQAKKLPLLGDIDDES 300 Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365 AED+RIV+ PK+R++D LLME +F L+++E R PLNM VLS G+VPQV+ L +L+EWL Sbjct: 301 AEDIRIVIEPKSRNVDAALLMEQLFRLTELEARIPLNMTVLSKGQVPQVLGLAQVLQEWL 360 Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425 HRR VL RRS R++ ID R+E+L GLLIAYLN+DE+I IIRNED+PKP +++RF+LT+ Sbjct: 361 DHRRVVLRRRSEHRLREIDHRLEVLGGLLIAYLNLDEVIRIIRNEDEPKPALIARFALTD 420 Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485 Q +AILN+RLRSLRKLEE +I++E D L E+E + LL S + QW++I+ EI+ +K+ Sbjct: 421 VQAEAILNMRLRSLRKLEEIEIRAENDRLTTEREGLVELLGSDEMQWDRISAEIKGIKKQ 480 Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545 F K+T LG+R+T + D A +++A+I+KEP+TVV+S +GWIR+LK H DL+ L F Sbjct: 481 FGKATPLGKRKTVTAALPDIDVA-VEEALIDKEPVTVVLSEKGWIRALKGHDGDLAKLTF 539 Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605 K D LK+A+ A TTD+I+L +T+GK YTL A L GRG GE ++L+IDL+ +++ Sbjct: 540 KTDDVLKVAIKAQTTDKIVLFATNGKFYTLEASELPGGRGQGEPVRLMIDLDEADELLET 599 Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVG 665 FV+ KL+V SS GN F+V E E++A TRKGK L + E+ L GD VAVVG Sbjct: 600 FVHKPGRKLVVASSVGNGFVVTEDEVVAQTRKGKQVLNLGDGERALLCRPAEGDAVAVVG 659 Query: 666 ENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSEND 725 ENR+LL+F + ++ E++RG+GVRLQ YKDGG++DV F GL D++GR R+ + Sbjct: 660 ENRRLLVFPLAELNELTRGRGVRLQKYKDGGLADVQVFTAATGLKLSDTSGRV--RTVTE 717 Query: 726 LLGWLGKRGGVGSLVPKGFPRSGKF 750 L + G R GS VPKG+P+SG+F Sbjct: 718 LDEFKGARAAAGSAVPKGWPKSGRF 742 >gi|86749737|ref|YP_486233.1| DNA topoisomerase IV subunit A [Rhodopseudomonas palustris HaA2] gi|86572765|gb|ABD07322.1| DNA topoisomerase IV subunit A [Rhodopseudomonas palustris HaA2] Length = 753 Score = 887 bits (2291), Expect = 0.0, Method: Compositional matrix adjust. Identities = 415/736 (56%), Positives = 548/736 (74%), Gaps = 2/736 (0%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + V LR ALEERYLAYALSTI RA+PD RDG KPVHRRI++ M + LD G FKKSA Sbjct: 13 IHEVQLREALEERYLAYALSTIMHRALPDARDGLKPVHRRILYGMRLLRLDPGTPFKKSA 72 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 +IVG+V+G HPHGDQS+YD+LVRLAQ F RYPL+ GQGNFGNIDGD+ AAYRYTEARM Sbjct: 73 KIVGDVMGSFHPHGDQSIYDALVRLAQDFSSRYPLVDGQGNFGNIDGDNPAAYRYTEARM 132 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 T VA L+L G+DED V FR Y+ + EPVV P FPNLLANG GIAVGMAT+IP HN Sbjct: 133 TDVARLLLDGIDEDGVAFRPNYDGQAKEPVVLPGGFPNLLANGAQGIAVGMATAIPPHNA 192 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+C+AAL LID P+ + LL ++ GPDFPTGGI+++S+ESI E+Y GRG FR RA+W Sbjct: 193 AELCDAALHLIDKPDAKTKALLRFVKGPDFPTGGIVIDSKESIAEAYTTGRGAFRTRAKW 252 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316 EE RG+W +VVTEIP+ VQKSRLIEKIAEL+ K++PL+ DIRDESAEDVR+V+ PK Sbjct: 253 MQEEGARGTWVVVVTEIPWLVQKSRLIEKIAELLNEKKLPLVGDIRDESAEDVRVVIEPK 312 Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376 +R++DP L+MES+F L+++E+R PLN+NVL GR+P+V+ L L+EWL H R+VL RRS Sbjct: 313 SRAVDPALMMESLFRLTELESRIPLNLNVLVKGRIPKVLGLAECLREWLDHLRDVLLRRS 372 Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRL 436 ++R I+ R+E+L G LIAYLNID++I IIR ED+PKPV++ F+LT+ Q +AILN+RL Sbjct: 373 NYRKAQIEHRLEVLGGYLIAYLNIDKVIKIIRTEDEPKPVLMKAFNLTDVQAEAILNMRL 432 Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496 RSLRKLEE++I++E NL AE + I+++L S +QW ++ ++R+V+E+F T LG+RR Sbjct: 433 RSLRKLEEFEIRTEDKNLRAELKGINAILKSETEQWAKVGEQVRKVREMFGPKTPLGKRR 492 Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALH 556 T F + D A +++A +E+EP+TVVIS++GW+R+LK H DLS L+FK+ D L A Sbjct: 493 TQFADAPEHDLAAIEEAFVEREPVTVVISDKGWVRTLKGHVADLSGLNFKQDDKLDRAFF 552 Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLV 616 A TT ++LLL+T+G+ Y+L L GRGHGE I++ ID+ + IV FV+ K L+ Sbjct: 553 AETTSKLLLLATNGRFYSLEVAKLPGGRGHGEPIRMFIDMEQDAAIVAMFVHKGGRKFLI 612 Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVS--SEEKMKLVVKVTGDHVAVVGENRKLLIFS 674 S G F+V E + + TRKGK + V +E + VV D+VAV+G+NRK+LIF Sbjct: 613 ASHDGQGFVVGEDDCVGTTRKGKQIINVEMPNEARALTVVGDGSDNVAVIGDNRKMLIFP 672 Query: 675 IDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRG 734 +DQ+PEM+RG+GVRLQ YKDGG+SD++ F EGL+W DSAGR ++ + +L W G R Sbjct: 673 LDQVPEMARGRGVRLQKYKDGGLSDIVTFVAKEGLSWRDSAGREFSATMKELAEWRGNRA 732 Query: 735 GVGSLVPKGFPRSGKF 750 G + PKGFP+S KF Sbjct: 733 DAGRMPPKGFPKSNKF 748 >gi|182678910|ref|YP_001833056.1| DNA topoisomerase IV subunit A [Beijerinckia indica subsp. indica ATCC 9039] gi|182634793|gb|ACB95567.1| DNA topoisomerase IV, A subunit [Beijerinckia indica subsp. indica ATCC 9039] Length = 752 Score = 886 bits (2290), Expect = 0.0, Method: Compositional matrix adjust. Identities = 416/731 (56%), Positives = 556/731 (76%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 V+LR ALEERYLAYALSTI RA+PD RDG KPVHRRI++ M + LD G AFKK A+IV Sbjct: 20 VNLREALEERYLAYALSTITGRALPDARDGLKPVHRRILYGMQILRLDPGTAFKKCAKIV 79 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+V+G HPHGDQ++YD+LVRLAQ F RYPL+ GQGNFGNIDGDSAAAYRYTEARMT++ Sbjct: 80 GDVMGSFHPHGDQAIYDALVRLAQDFSSRYPLVDGQGNFGNIDGDSAAAYRYTEARMTEI 139 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A L+L+G+DEDA+DFR+ Y+ + EP+V P+ PNLLANG GIAVGMATSIP HN+ E+ Sbjct: 140 ARLLLEGIDEDAIDFRENYSGDQKEPIVLPAALPNLLANGAQGIAVGMATSIPPHNLSEL 199 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 C+AAL LI + + + ++LL ++ GPDFPTGGI+V+S ESI E+YR GRG FR+RARW E Sbjct: 200 CDAALYLISHRDATSDQLLTFVRGPDFPTGGILVDSPESIAETYRTGRGAFRLRARWERE 259 Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319 E RG++ IVVTEIPY VQKSRLIEK+AEL+ K++PL+ DIRDESAEDVRIV+ PK+R+ Sbjct: 260 EGTRGTYVIVVTEIPYMVQKSRLIEKLAELLNDKKLPLVGDIRDESAEDVRIVIEPKSRA 319 Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379 ++P+LLMES+F L+++ETRFP+NMNVL G VP+V+ LD L++WL HRREVL RRS R Sbjct: 320 VEPELLMESLFKLTELETRFPVNMNVLVDGVVPRVVSLDEALRQWLDHRREVLLRRSRHR 379 Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSL 439 + I+RR+E+L G+LI +LN+DE+I IIR ED+PK V+ + F+L++ Q + IL+ RLRSL Sbjct: 380 LAEIERRLEVLAGMLIVFLNLDEVIRIIREEDEPKEVLKATFTLSDIQANYILDTRLRSL 439 Query: 440 RKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTF 499 R+LEE +++ E +NL EK +I+ LL S +QW +I+ +IR++K+ + ++T LGRRRTTF Sbjct: 440 RRLEEMELRREYENLEKEKSEIEGLLASESKQWKEISSQIRDLKKRYGEATPLGRRRTTF 499 Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHT 559 V + A+IE+EP+T+V+S +GWIR+LK H DLS L FK D L A T Sbjct: 500 GNVPDVGAVDVATALIEREPVTIVVSEKGWIRALKGHVADLSTLTFKGDDQLAFQFFAET 559 Query: 560 TDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSS 619 T +ILL ++DGK +TL A L GRGHGE ++L++DL +++ + Y++ KLL+ +S Sbjct: 560 TSKILLFASDGKVFTLEASKLPGGRGHGEPLRLMVDLGEGEEVTSIIPYETGAKLLLTAS 619 Query: 620 KGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIP 679 G FIV + ++I TRKGK L + K+ +V GDH+A++GENRKLLIF + QI Sbjct: 620 DGRGFIVGQDDLIGTTRKGKQVLNCDAPAKLSHIVPAAGDHLAIIGENRKLLIFPLVQIA 679 Query: 680 EMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSL 739 EM+RGKGVRLQ YKDGG+SD I GL+W D+AGRS++ ++ DL W+G+RG G L Sbjct: 680 EMTRGKGVRLQKYKDGGVSDAKVIFIDAGLSWQDAAGRSFHLAKADLADWIGQRGEAGRL 739 Query: 740 VPKGFPRSGKF 750 P+GFP++ +F Sbjct: 740 PPRGFPKNNRF 750 >gi|192291356|ref|YP_001991961.1| DNA topoisomerase IV subunit A [Rhodopseudomonas palustris TIE-1] gi|192285105|gb|ACF01486.1| DNA topoisomerase IV, A subunit [Rhodopseudomonas palustris TIE-1] Length = 753 Score = 883 bits (2281), Expect = 0.0, Method: Compositional matrix adjust. Identities = 418/736 (56%), Positives = 545/736 (74%), Gaps = 2/736 (0%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + V LR ALEERYLAYALSTI RA+PD RDG KPVHRRI++ M + LD G FKKSA Sbjct: 13 IHEVQLREALEERYLAYALSTIMHRALPDARDGLKPVHRRILYGMRLLRLDPGTPFKKSA 72 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 +IVG+V+G HPHGDQS+YD+LVRLAQ F RYPL+ GQGNFGNIDGD+ AAYRYTEARM Sbjct: 73 KIVGDVMGSFHPHGDQSIYDALVRLAQDFSSRYPLVDGQGNFGNIDGDNPAAYRYTEARM 132 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 T VA L+L G+DED V FR Y+ + EPVV P FPNLLANG GIAVGMAT+IP HN Sbjct: 133 TDVARLLLDGIDEDGVAFRANYDGQSKEPVVLPGGFPNLLANGAQGIAVGMATAIPPHNA 192 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+C+AAL LI+ P+ + LL ++ GPDFPTGGII++S+ESI E+Y GRG FR RA+W Sbjct: 193 AELCDAALHLIEKPDAKSKALLRFVKGPDFPTGGIIIDSKESIAEAYTTGRGAFRTRAKW 252 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316 EE RG+W +VVT+IP+ VQKSRLIEKIAEL+ K++PL+ DIRDESAEDVRIV+ PK Sbjct: 253 EQEEGARGTWTVVVTQIPWLVQKSRLIEKIAELLNEKKLPLVGDIRDESAEDVRIVIEPK 312 Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376 +RS+DP L+MES+F L+++E+R PLN+NVL GR+P+V+ L L+EWL H R+VL RRS Sbjct: 313 SRSVDPTLMMESLFRLTELESRIPLNLNVLVKGRIPKVLGLAECLREWLDHLRDVLLRRS 372 Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRL 436 +R I+ R+E+L G LIAYLNID++I IIR ED+PKPV++ F+LTE Q +AILN+RL Sbjct: 373 EYRKGQIEHRLEVLGGYLIAYLNIDKVIKIIRTEDEPKPVLMKAFNLTEIQAEAILNMRL 432 Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496 RSLRKLEE++I++E NL AE + I+++L S +QW ++ ++R+V+E+F T LG+RR Sbjct: 433 RSLRKLEEFEIRTEDKNLRAELKGINAVLKSETEQWAKVGEQVRKVREMFGPKTPLGKRR 492 Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALH 556 T F + D A +++A +E+EP+TVVIS++GW+R+LK H DLS L+FK+ D L + Sbjct: 493 TQFADAPEHDLAAIEEAFVEREPVTVVISDKGWVRTLKGHVEDLSGLNFKQDDKLGQSFF 552 Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLV 616 A TT ++LLL+T+G+ Y L L GRGHGE I++ ID+ + IVT FV+ K L+ Sbjct: 553 AETTSKLLLLATNGRFYALDVAKLPGGRGHGEPIRMFIDMEQDAAIVTVFVHTGGRKFLI 612 Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVS--SEEKMKLVVKVTGDHVAVVGENRKLLIFS 674 S G F+V E E + +TRKGK L V +E + VV D VAV+G+NRK++IF Sbjct: 613 ASHDGQGFLVNEDECVGSTRKGKQILNVDVPNEARALTVVSEGDDSVAVIGDNRKMVIFP 672 Query: 675 IDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRG 734 +DQ+PEM+RG+GVRLQ YKDGG+SD+ F +GL W DSAGR ++ + +L W G R Sbjct: 673 LDQVPEMTRGRGVRLQKYKDGGLSDIATFSSKQGLGWRDSAGREFSATMKELAEWRGNRA 732 Query: 735 GVGSLVPKGFPRSGKF 750 G L PKGFP+S KF Sbjct: 733 DAGRLPPKGFPKSNKF 748 >gi|39935769|ref|NP_948045.1| DNA topoisomerase IV subunit A [Rhodopseudomonas palustris CGA009] gi|39649622|emb|CAE28144.1| DNA topoisomerase IV subunitA [Rhodopseudomonas palustris CGA009] Length = 753 Score = 883 bits (2281), Expect = 0.0, Method: Compositional matrix adjust. Identities = 417/736 (56%), Positives = 545/736 (74%), Gaps = 2/736 (0%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + V LR ALEERYLAYALSTI RA+PD RDG KPVHRRI++ M + LD G FKKSA Sbjct: 13 IHEVQLREALEERYLAYALSTIMHRALPDARDGLKPVHRRILYGMRLLRLDPGTPFKKSA 72 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 +IVG+V+G HPHGDQS+YD+LVRLAQ F RYPL+ GQGNFGNIDGD+ AAYRYTEARM Sbjct: 73 KIVGDVMGSFHPHGDQSIYDALVRLAQDFSSRYPLVDGQGNFGNIDGDNPAAYRYTEARM 132 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 T VA L+L G+DED V FR Y+ + EPVV P FPNLLANG GIAVGMAT+IP HN Sbjct: 133 TDVARLLLDGIDEDGVAFRANYDGQSKEPVVLPGGFPNLLANGAQGIAVGMATAIPPHNA 192 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+C+AAL LI+ P+ + LL ++ GPDFPTGGII++S+ESI E+Y GRG FR RA+W Sbjct: 193 AELCDAALHLIEKPDAKSKALLRFVKGPDFPTGGIIIDSKESIAEAYTTGRGAFRTRAKW 252 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316 EE RG+W +VVT+IP+ VQKSRLIEKIAEL+ K++PL+ DIRDESAEDVRIV+ PK Sbjct: 253 EQEEGARGTWTVVVTQIPWLVQKSRLIEKIAELLNEKKLPLVGDIRDESAEDVRIVIEPK 312 Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376 +RS+DP L+MES+F L+++E+R PLN+NVL GR+P+V+ L L+EWL H R+VL RRS Sbjct: 313 SRSVDPTLMMESLFRLTELESRIPLNLNVLVKGRIPKVLGLAECLREWLDHLRDVLLRRS 372 Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRL 436 +R I+ R+E+L G LIAYLNID++I IIR ED+PKPV++ F+LTE Q +AILN+RL Sbjct: 373 EYRKGQIEHRLEVLGGYLIAYLNIDKVIKIIRTEDEPKPVLMKAFNLTEIQAEAILNMRL 432 Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496 RSLRKLEE++I++E NL AE + I+++L S +QW ++ ++R+V+E+F T LG+RR Sbjct: 433 RSLRKLEEFEIRTEDKNLRAELKGINAVLKSETEQWAKVGEQVRKVREMFGPKTPLGKRR 492 Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALH 556 T F + D A +++A +E+EP+TVVIS++GW+R+LK H DLS L+FK+ D L + Sbjct: 493 TQFADAPEHDLAAIEEAFVEREPVTVVISDKGWVRTLKGHVEDLSGLNFKQDDKLGQSFF 552 Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLV 616 A TT ++LLL+T+G+ Y L L GRGHGE I++ ID+ + IVT FV+ K L+ Sbjct: 553 AETTSKLLLLATNGRFYALDVAKLPGGRGHGEPIRMFIDMEQDAAIVTVFVHTGGRKFLI 612 Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVS--SEEKMKLVVKVTGDHVAVVGENRKLLIFS 674 S G F+V E E + +TRKGK L V +E + VV D +AV+G+NRK++IF Sbjct: 613 ASHDGQGFVVNEDECVGSTRKGKQILNVDVPNEARALTVVSEGDDSIAVIGDNRKMVIFP 672 Query: 675 IDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRG 734 +DQ+PEM+RG+GVRLQ YKDGG+SD+ F +GL W DSAGR ++ + +L W G R Sbjct: 673 LDQVPEMTRGRGVRLQKYKDGGLSDIATFSSKQGLGWRDSAGREFSATMKELAEWRGNRA 732 Query: 735 GVGSLVPKGFPRSGKF 750 G L PKGFP+S KF Sbjct: 733 DAGRLPPKGFPKSNKF 748 >gi|298291625|ref|YP_003693564.1| DNA topoisomerase IV, subunit alpha [Starkeya novella DSM 506] gi|296928136|gb|ADH88945.1| DNA topoisomerase IV, A subunit [Starkeya novella DSM 506] Length = 744 Score = 881 bits (2277), Expect = 0.0, Method: Compositional matrix adjust. Identities = 419/735 (57%), Positives = 549/735 (74%), Gaps = 3/735 (0%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 ++ + L+ ALEERYLAYALSTI RA+PD RDG KPVHRRI++ M + LD G F+KS Sbjct: 12 TIEPIGLKAALEERYLAYALSTIMHRALPDARDGLKPVHRRILYGMRLLRLDPGGGFRKS 71 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 A+IVG+V+G HPHG+ ++YD++VRLAQ F QRYPL+ GQGNFGNIDGD+AAA RYTEAR Sbjct: 72 AKIVGDVMGSFHPHGNMAIYDAMVRLAQDFSQRYPLVDGQGNFGNIDGDNAAAERYTEAR 131 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 +T+VA LIL G+DEDAVDFR Y+ EPVV P FPNLLANG++GIAVGMATSIP HN Sbjct: 132 LTEVARLILDGIDEDAVDFRPNYDGTTEEPVVMPGAFPNLLANGSTGIAVGMATSIPPHN 191 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 E+ +A+L LIDNP+ + + LL+++ GPDFPTGG+++ES SI ++Y GRGGFR+RAR Sbjct: 192 AAELIDASLHLIDNPQATTDDLLQFVKGPDFPTGGVVIESPASIADAYATGRGGFRLRAR 251 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315 W EE GRG++ +VVTEIPY V KSRL+EKIA+L+ K++PLL D+RDESAEDVR+VL P Sbjct: 252 WHKEETGRGTYVVVVTEIPYGVPKSRLVEKIADLLNEKKLPLLADVRDESAEDVRLVLEP 311 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 + R++D +L+MES+F L+++ETRFPLNMNVL G+VP+V+ L L+EW+ HRREVL RR Sbjct: 312 RARNVDAELMMESLFRLTELETRFPLNMNVLVGGQVPKVVSLAEALREWVDHRREVLLRR 371 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435 S R++ I+ R+E+L G LIAYLN+DE+I IIR ED+PK ++ F LT+ Q +AILN+R Sbjct: 372 SRHRLKEIEHRLEVLGGYLIAYLNLDEVIRIIREEDEPKVELMRTFELTDVQAEAILNMR 431 Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495 LRSLRKLEE++I+ E D L EK+ I+ LL S +QW +A E+ E ++IF T LGRR Sbjct: 432 LRSLRKLEEFEIRKEHDALSKEKDGIEKLLGSEARQWKTVAWELGETRKIFGPDTPLGRR 491 Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555 RT F E + D + +A++E+EPITVV+S +GWIR+LK H DLSAL FK D L+I+ Sbjct: 492 RTGFGEAAAHDADAVSEALVEREPITVVVSEKGWIRALKGHVADLSALAFKGDDELRISF 551 Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615 TT ++L+ +T+G+ YTL A L GRGHGE ++L I+L DIV Y KLL Sbjct: 552 FTETTAKLLVFATNGRFYTLDASKLPGGRGHGEPLRLSIELEQEADIVDVLPYQGGRKLL 611 Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSI 675 V + +G F+V E E +ANTRKGK L V ++ +K V+ GD VAV+GENRKLL+F + Sbjct: 612 VAAKEGRGFLVAEDECVANTRKGKQVLGVDGQDAVK-VIPAIGDSVAVIGENRKLLVFPL 670 Query: 676 DQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGG 735 QIPEM+RG+GVRLQ YKDG +SDV F +GLTW D++GR++ + DL W G+R Sbjct: 671 SQIPEMTRGRGVRLQRYKDGQMSDVKVFSAADGLTWTDTSGRTW--TVTDLTEWRGERAA 728 Query: 736 VGSLVPKGFPRSGKF 750 G L PKGFPR+ +F Sbjct: 729 AGRLPPKGFPRNNRF 743 >gi|300023036|ref|YP_003755647.1| DNA topoisomerase IV, subunit alpha [Hyphomicrobium denitrificans ATCC 51888] gi|299524857|gb|ADJ23326.1| DNA topoisomerase IV, A subunit [Hyphomicrobium denitrificans ATCC 51888] Length = 749 Score = 880 bits (2275), Expect = 0.0, Method: Compositional matrix adjust. Identities = 419/734 (57%), Positives = 552/734 (75%), Gaps = 1/734 (0%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 ++ V R ALEERYLAYALSTI RA+PD+RDG KPVHRRI++AM E+ L+ + K A Sbjct: 13 IEPVEFRTALEERYLAYALSTIMNRALPDVRDGLKPVHRRILYAMRELRLNPEGGYIKCA 72 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 +IVGEV+G HPHG+Q++YD+L RLAQ F RYPL+ GQGNFGNIDGD+ AA RYTEARM Sbjct: 73 KIVGEVMGDYHPHGNQAIYDALARLAQDFAVRYPLVDGQGNFGNIDGDNPAAERYTEARM 132 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 T+ A LIL+G+DED V+FR Y+ EPVV P+ FPNLLANG SGIAVGMAT+IP HNV Sbjct: 133 TETAALILEGIDEDTVEFRPNYDGRVEEPVVLPAAFPNLLANGASGIAVGMATNIPPHNV 192 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+C A L LI +P +IEKL+E + GPDFPTGG+IVE R++I+E+Y+ GRGGFRVRARW Sbjct: 193 DELCAALLHLIKHPNATIEKLVEMVPGPDFPTGGVIVEPRDAILEAYKTGRGGFRVRARW 252 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316 E+ RG + IVVTEIPY VQK++L+EKIAEL+ K++P L D+RDESAE++R+VL PK Sbjct: 253 SKEDTARGGYQIVVTEIPYGVQKAKLVEKIAELMSDKKLPFLGDVRDESAEEIRLVLEPK 312 Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376 R +DP LLMES+F S++E R LNMNVLS G+VP V+ L +L +WL HR EVL RRS Sbjct: 313 TRVVDPVLLMESMFRASELEVRVGLNMNVLSAGQVPNVLDLRDVLWQWLEHRIEVLVRRS 372 Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRL 436 + R++ I+ R+E+L G LIAYLNIDE+I IIR ED PK ++++F L++ Q +AILNLRL Sbjct: 373 THRLKKIEHRLEVLDGYLIAYLNIDEVIRIIRREDDPKAKLIAKFKLSDVQAEAILNLRL 432 Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496 RSL +LEE +I+SE D L E+ ++ LL S + QW ++ E++ +E +SK T +GRRR Sbjct: 433 RSLSRLEEVEIRSEHDKLSKERRELKQLLKSEELQWEHVSNEVKTTREAYSKKTAIGRRR 492 Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALH 556 +TF + + L A++EKEP+TV++S +GW+R+LK H DLS L FK+GD+LK A+ Sbjct: 493 STFADAPEVE-VDLATALVEKEPVTVILSEKGWVRTLKGHQDDLSKLDFKQGDALKRAIK 551 Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLV 616 A TTD+++LL+T+GK +TL A L GRGHGE ++L+IDL N DIV FV+D + KLLV Sbjct: 552 ALTTDKLVLLTTNGKFFTLEANALPGGRGHGEPVRLMIDLEENHDIVEVFVHDPSRKLLV 611 Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSID 676 S+ G FIV E E+IA+TRKGK L VS ++ ++ V GD+VA VG+NRKLL+F ID Sbjct: 612 ASTAGYGFIVPEEEVIASTRKGKQVLNVSEPDEARVCVPAEGDYVATVGDNRKLLVFKID 671 Query: 677 QIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGV 736 ++ EM+RGKGV LQ +KDG +SDV FK +GLTW+DSAGR + + ++ W+G+R Sbjct: 672 EVNEMTRGKGVILQRFKDGSLSDVRVFKKSDGLTWVDSAGREFTLAWGEMRDWVGERAQA 731 Query: 737 GSLVPKGFPRSGKF 750 G +VP+GFPRS F Sbjct: 732 GRVVPRGFPRSNSF 745 >gi|316934136|ref|YP_004109118.1| DNA topoisomerase IV subunit A [Rhodopseudomonas palustris DX-1] gi|315601850|gb|ADU44385.1| DNA topoisomerase IV, A subunit [Rhodopseudomonas palustris DX-1] Length = 753 Score = 879 bits (2271), Expect = 0.0, Method: Compositional matrix adjust. Identities = 420/736 (57%), Positives = 542/736 (73%), Gaps = 2/736 (0%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + V LR ALEERYLAYALSTI RA+PD RDG KPVHRRI++ M + LD G FKKSA Sbjct: 13 IHEVQLREALEERYLAYALSTIMHRALPDARDGLKPVHRRILYGMRLLRLDPGTPFKKSA 72 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 +IVG+V+G HPHGDQS+YD+LVRLAQ F RYPL+ GQGNFGNIDGD+ AAYRYTEARM Sbjct: 73 KIVGDVMGSFHPHGDQSIYDALVRLAQDFSSRYPLVDGQGNFGNIDGDNPAAYRYTEARM 132 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 T VA L+L G+DED V FR Y+ + EPVV P FPNLLANG GIAVGMAT+IP HN Sbjct: 133 TDVARLLLDGIDEDGVAFRPNYDGQAKEPVVLPGGFPNLLANGAQGIAVGMATAIPPHNA 192 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+C+AAL LI+ P+ LL ++ GPDFPTGGII++S+ESI E+Y GRG FR RA+W Sbjct: 193 AELCDAALHLIEKPDAKSRALLRFVKGPDFPTGGIIIDSKESIAEAYTTGRGAFRTRAKW 252 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316 EE RG+W +VVTEIP+ VQKSRLIEKIAEL+ K++PL+ DIRDESAEDVRIV+ PK Sbjct: 253 AQEEGARGTWSVVVTEIPWLVQKSRLIEKIAELLNEKKLPLVGDIRDESAEDVRIVIEPK 312 Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376 +RS+DP L+MES+F L+++E+R LN+NVL GR+P+V+ L L+EWL H R+VL RRS Sbjct: 313 SRSVDPALMMESLFRLTELESRISLNLNVLIKGRIPKVVGLAEALREWLDHLRDVLLRRS 372 Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRL 436 + R I+ R+E+L G LIAYLNIDE+I IIR ED+PKPV++ F+LTE Q +AILN+RL Sbjct: 373 NHRKTQIEHRLEVLGGYLIAYLNIDEVIRIIRTEDEPKPVLMKTFNLTEIQAEAILNMRL 432 Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496 RSLRKLEE++IK E +L AE + I+++L S +QW ++ ++R+V+E+F T LG+RR Sbjct: 433 RSLRKLEEFEIKKEDKDLRAELKGINAVLKSETEQWAKVGEQVRKVREMFGPKTPLGKRR 492 Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALH 556 T F + D A +++A +E+EP+TVVIS++GW+R+LK H DLS L+FK+ D L + Sbjct: 493 TQFADAPEHDLAAIEEAFVEREPVTVVISDKGWVRTLKGHVEDLSGLNFKQDDKLGQSFF 552 Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLV 616 A TT ++LLL+T+G+ Y L L GRGHGE I++ ID+ + IVT FV+ K L+ Sbjct: 553 AETTSKLLLLATNGRFYALDVAKLPGGRGHGEPIRMFIDMEQDAAIVTVFVHTGGRKFLI 612 Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVS--SEEKMKLVVKVTGDHVAVVGENRKLLIFS 674 S G F+V E E + +TRKGK L V +E + VV D VAV+G+NRK++IF Sbjct: 613 ASHDGQGFVVNEDECVGSTRKGKQILNVDIPNEARALTVVSEGDDSVAVIGDNRKMVIFP 672 Query: 675 IDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRG 734 +DQ+PEM+RG+GVRLQ YKDGG+SDV F +GL W DSAGR ++ + +L W G R Sbjct: 673 LDQVPEMTRGRGVRLQKYKDGGLSDVATFSSKQGLGWRDSAGREFSATMKELAEWRGNRA 732 Query: 735 GVGSLVPKGFPRSGKF 750 G L PKGFP+S KF Sbjct: 733 DAGRLPPKGFPKSNKF 748 >gi|27380168|ref|NP_771697.1| DNA topoisomerase IV subunit A [Bradyrhizobium japonicum USDA 110] gi|27353322|dbj|BAC50322.1| topoisomerase II [Bradyrhizobium japonicum USDA 110] Length = 751 Score = 879 bits (2270), Expect = 0.0, Method: Compositional matrix adjust. Identities = 414/734 (56%), Positives = 541/734 (73%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + V LR ALEERYLAYALSTI RA+PD RDG KPVHRRI++ M + LD G AFKKSA Sbjct: 13 IHEVPLREALEERYLAYALSTIMHRALPDARDGLKPVHRRILYGMRLLRLDPGTAFKKSA 72 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 +IVG+V+G HPHGDQ++YD++VRLAQ F RYPL+ GQGNFGNIDGD+ AAYRYTEARM Sbjct: 73 KIVGDVMGSFHPHGDQAIYDAMVRLAQDFSSRYPLVDGQGNFGNIDGDNPAAYRYTEARM 132 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 T VA L+L+G+DED V+FR Y+ + EP+V P FPNLLANG GIAVGMATSIP HN Sbjct: 133 TDVARLLLEGIDEDGVEFRPNYDGQSKEPIVLPGGFPNLLANGAQGIAVGMATSIPPHNA 192 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+C+AAL LI+ P+ + LL+++ GPDFPTGGI V+S+++I E+Y GRG FRVRARW Sbjct: 193 AELCDAALHLIEKPDAKSKALLKWVKGPDFPTGGICVDSKQAIAEAYTTGRGSFRVRARW 252 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316 EE RG+W +VVTEIP+ VQKSRLIEKIAEL K++PL+ D+RDESAEDVRIV+ PK Sbjct: 253 EQEEGARGTWVVVVTEIPFLVQKSRLIEKIAELQDQKKLPLVGDVRDESAEDVRIVIEPK 312 Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376 ++++DP L+MES+F L+++E + PLN+NVL GR+P+V+ L L+EWL H R+VL RRS Sbjct: 313 SKNVDPALMMESLFRLTELENKIPLNLNVLIKGRIPKVVGLAECLREWLDHLRDVLIRRS 372 Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRL 436 ++R I+ R+E+L G LIAYLNID++I IIR ED+PKP ++ F LTE Q +AILN+RL Sbjct: 373 NYRKAQIEHRLEVLGGFLIAYLNIDKVIKIIRTEDEPKPALMKAFKLTEVQAEAILNMRL 432 Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496 RSLRKLEE +I++E NL E + I+++L S +QW ++ ++ +V+++F T LG+RR Sbjct: 433 RSLRKLEEMEIRTEDKNLRNELKGINAVLASEAEQWKKVGEQVGKVRDMFGPKTPLGKRR 492 Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALH 556 TTF + D A +++A +E+EP+TVV+S++GWIR++K H DLS L FK+ D L A Sbjct: 493 TTFADAPEHDLAAIEEAFVEREPVTVVVSDKGWIRTMKGHVEDLSGLAFKQDDRLGFAFF 552 Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLV 616 A TT ++LL +T+GK Y+L L GRGHGE I+L IDL V FV K LV Sbjct: 553 AETTSKLLLFATNGKFYSLDVAKLPGGRGHGEPIRLFIDLEQEAAPVALFVNKGGRKFLV 612 Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSID 676 S +G F+V E + + T+KGK L V + + V +V GD VAV+GENRK+L+F +D Sbjct: 613 ASHEGQGFVVNEDDCVGTTKKGKQVLNVDMPNEARTVTEVVGDTVAVIGENRKMLVFPLD 672 Query: 677 QIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGV 736 QIPEM+RG+GVRLQ YKDGG+SDV+ F GLTW DSAGR ++ + +L W G R Sbjct: 673 QIPEMARGRGVRLQKYKDGGLSDVVVFDAKAGLTWKDSAGREFSATMKELAEWQGTRADA 732 Query: 737 GSLVPKGFPRSGKF 750 G L PKGFP+S KF Sbjct: 733 GRLPPKGFPKSNKF 746 >gi|154247807|ref|YP_001418765.1| DNA topoisomerase IV subunit A [Xanthobacter autotrophicus Py2] gi|154161892|gb|ABS69108.1| DNA topoisomerase IV, A subunit [Xanthobacter autotrophicus Py2] Length = 745 Score = 878 bits (2268), Expect = 0.0, Method: Compositional matrix adjust. Identities = 414/735 (56%), Positives = 544/735 (74%), Gaps = 2/735 (0%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 +++ V+L+ ALEERYLAYALSTI RA+PD RDG KPVHRRI+HAM ++ LD G FKKS Sbjct: 12 HIEKVTLKEALEERYLAYALSTIMHRALPDARDGLKPVHRRILHAMRQLRLDPGQGFKKS 71 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 AR+VG+VIGK HPHGDQSVYD+LVRLAQ F QRYPL+ GQGNFGN+DGD+AAA RYTEAR Sbjct: 72 ARVVGDVIGKFHPHGDQSVYDALVRLAQDFAQRYPLVDGQGNFGNVDGDNAAAMRYTEAR 131 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 +T+ A L+L G+DEDAVDFR TY+ + EP V P+ FPNLLANG+ GIAVGMATSIP HN Sbjct: 132 LTETARLLLDGIDEDAVDFRPTYDGSEEEPAVLPAAFPNLLANGSQGIAVGMATSIPPHN 191 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 E+ +AAL LID+PE LL+++ GPDFPTGG++VE + E+Y GRG FRVRAR Sbjct: 192 AAELLDAALHLIDHPEAPAFDLLQFVPGPDFPTGGVLVEDPVGVAEAYATGRGSFRVRAR 251 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315 W EE GRG++ +VVTEIPY V KSRL+EKIAEL+ K++PLL D+RDESAED+R+VL P Sbjct: 252 WEKEETGRGTYVVVVTEIPYGVAKSRLVEKIAELLTDKKLPLLADVRDESAEDIRLVLEP 311 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 + R++D ++LMES+F L+++E R PLNMNVL G+VP+V+ L L+EWL HRR+VL RR Sbjct: 312 RARTVDAEVLMESLFKLTELEARIPLNMNVLVRGQVPKVLSLSEALREWLDHRRDVLLRR 371 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435 S +R++ I R+E+L G LIAYLN+DE+I IIR ED+PK ++ F LT+ Q +AILN+R Sbjct: 372 SRYRLEQIAHRLEVLGGYLIAYLNLDEVIRIIREEDEPKQELMRTFELTDVQTEAILNMR 431 Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495 LRSLR+LEE +I+ E D L E++ ++ L+ S QW IA EIRE ++ + T +GRR Sbjct: 432 LRSLRRLEEMEIRKEHDALSKEQDGLNKLVASEAAQWKSIAKEIRETRKTYGPETAIGRR 491 Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555 RTTF + +A++E+EP+T+V+S +GWIR+LK H DLS L FK DSL A Sbjct: 492 RTTFAAPPTFHEDAFTEALVEREPVTIVVSAKGWIRALKGHVQDLSNLQFKGDDSLGHAF 551 Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615 A TT ++++ +++G+ YTL A L GRGHGE ++L+IDL +IV+ F Y KLL Sbjct: 552 FAETTSKVMVFASNGRFYTLEAAKLPGGRGHGEPVRLMIDLEQEAEIVSVFAYQPGRKLL 611 Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSI 675 + S +G F+V E + +ANTRKGK L + V V GD VAV+G+NRKLL+F + Sbjct: 612 LASKEGRGFVVGEDDCLANTRKGKQVLVTDPPDAALAVRFVEGDWVAVIGDNRKLLLFPL 671 Query: 676 DQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGG 735 +Q+PEM+RG+GVR Q Y++GG+SD+ F + GLTW D++GR++ +E LL W G+R Sbjct: 672 NQVPEMTRGRGVRFQRYREGGLSDLKAFSMASGLTWEDTSGRTWTVTE--LLEWQGERAS 729 Query: 736 VGSLVPKGFPRSGKF 750 G L PKGFPRS KF Sbjct: 730 AGRLPPKGFPRSNKF 744 >gi|217978281|ref|YP_002362428.1| DNA topoisomerase IV subunit A [Methylocella silvestris BL2] gi|217503657|gb|ACK51066.1| DNA topoisomerase IV, A subunit [Methylocella silvestris BL2] Length = 750 Score = 877 bits (2267), Expect = 0.0, Method: Compositional matrix adjust. Identities = 415/735 (56%), Positives = 540/735 (73%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 + V+LR ALEERYLAYALSTI RA+PD RDG KPVHRRI++ M + LD G AFKK Sbjct: 15 GTEPVNLREALEERYLAYALSTIMGRALPDARDGLKPVHRRILYGMQILRLDPGTAFKKC 74 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 A+IVG+V+G HPHGDQ++YD+LVRLAQ F RYPL+ GQGNFGNIDGD AAAYRYTEAR Sbjct: 75 AKIVGDVMGSFHPHGDQAIYDALVRLAQDFSSRYPLVDGQGNFGNIDGDGAAAYRYTEAR 134 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 MT VA L+L+G+DED+VDFRD Y+ + EPVV PS PNLLANG GIAVGMATSIP HN Sbjct: 135 MTDVARLLLEGIDEDSVDFRDNYSGDQQEPVVLPSALPNLLANGAQGIAVGMATSIPPHN 194 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 + E+C+AAL L+ + + S ++LL + GPDFPTGG++VES++SI E+YR GRG R+RAR Sbjct: 195 LAELCDAALYLLSHSDASTDQLLSFAPGPDFPTGGVLVESKQSIAETYRTGRGSLRLRAR 254 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315 W EE RG+W IVVTEIPY VQKSRLIEKIAEL+ K++PL+ DIRDESAEDVR+V+ P Sbjct: 255 WSKEEAARGAWTIVVTEIPYMVQKSRLIEKIAELLNDKKLPLVADIRDESAEDVRVVIEP 314 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 K+R++DP LLME +F L+++ETRFP+N+NVL G P+V+ L++WL HRREVL RR Sbjct: 315 KSRTVDPALLMEHLFRLTELETRFPVNLNVLVDGVAPRVVSFKEALQQWLDHRREVLVRR 374 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435 + R+ I RR+E+L G+LI +LN+DE+I IIR ED+PK + FSL++ QV+ +L+ R Sbjct: 375 ARHRLAEIVRRLELLAGMLIVFLNLDEVIRIIREEDEPKERLQLAFSLSDMQVNYVLDTR 434 Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495 LRSLR+LEE QI+ E + L EK ++++LL +QW +IA EIR++K+ + T LGRR Sbjct: 435 LRSLRRLEEMQIQREHEALEKEKLELEALLADEARQWKKIAAEIRDLKKKYGPETKLGRR 494 Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555 RT+F E + AM+E+EP+TVV+S +GWIR+LK DLS L FK DSL I+ Sbjct: 495 RTSFAEAPDVGEIDFASAMVEREPVTVVVSEKGWIRALKGQVADLSGLQFKGDDSLHISF 554 Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615 A TT +IL+LS DGK +TL AG L GR GE ++LL D+ + + F Y K+L Sbjct: 555 FAETTSKILVLSGDGKIFTLDAGKLPGGRSQGEPLRLLADIGEGESVAAVFPYAPGQKML 614 Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSI 675 V + G F+V + E+I TRKGK L V K++V GDHVA++GENRKLL+F + Sbjct: 615 VATDDGRGFVVSQDEMIGGTRKGKLLLNVEKPGIAKIIVPADGDHVAIIGENRKLLVFPL 674 Query: 676 DQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGG 735 DQ+PEM+RGKGVRLQ Y+DGG++D F I EGL+W DSAGR + ++ +L W+G R Sbjct: 675 DQVPEMARGKGVRLQKYRDGGVADAKVFSIVEGLSWKDSAGRVFVVAKPELAEWIGNRAE 734 Query: 736 VGSLVPKGFPRSGKF 750 G L P+GFP++ +F Sbjct: 735 AGRLPPRGFPKNNRF 749 >gi|299135097|ref|ZP_07028288.1| DNA topoisomerase IV, A subunit [Afipia sp. 1NLS2] gi|298590074|gb|EFI50278.1| DNA topoisomerase IV, A subunit [Afipia sp. 1NLS2] Length = 751 Score = 877 bits (2267), Expect = 0.0, Method: Compositional matrix adjust. Identities = 414/736 (56%), Positives = 547/736 (74%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 ++++ V+LR ALEERYLAYALSTI RA+PD RDG KPVHRRI++ M + LD + FKK Sbjct: 11 QDIQEVALREALEERYLAYALSTIMHRALPDARDGLKPVHRRILYGMRLLRLDPSSPFKK 70 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 SA+IVG+V+G HPHGDQ++YD+LVRLAQ F RYPL+ GQGNFGN+DGD+ AA RYTE+ Sbjct: 71 SAKIVGDVMGGFHPHGDQAIYDALVRLAQDFSSRYPLVDGQGNFGNVDGDNPAAMRYTES 130 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 R+T VA L+L+G+DEDAV+FR TY+ D EPVV P FPNLLANG GIAVGMATSIP H Sbjct: 131 RLTDVARLLLEGLDEDAVEFRPTYDGSDKEPVVLPGGFPNLLANGAQGIAVGMATSIPPH 190 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 N E+C+AAL LID P LL Y+ GPDFPTGGI+V+S++SI E+Y GRGGFRVRA Sbjct: 191 NAAELCDAALHLIDKPATKTRGLLRYVKGPDFPTGGIVVDSQDSIAEAYATGRGGFRVRA 250 Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314 +W E+ RG+W IVVTEIP+ VQKSRLIE+IAEL+ K++ L+ DIRDESAED+RIV+ Sbjct: 251 KWHQEDGARGTWNIVVTEIPWLVQKSRLIERIAELLNEKKLHLVGDIRDESAEDIRIVIE 310 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 PK++++DP++LME++F +D+E+R PLN+NVL GR+P+V+ L L+EWL H R+VL R Sbjct: 311 PKSKNVDPEVLMETLFKQTDLESRIPLNLNVLVKGRIPKVLGLAECLREWLDHLRDVLVR 370 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNL 434 RS+ R I+ R+E+L G LIAYLN+D++I IIR ED+PKPV++ F LT+ Q D+ILN+ Sbjct: 371 RSNHRKSQIEHRLEVLGGYLIAYLNLDKVIKIIRTEDEPKPVLIKTFKLTDIQADSILNM 430 Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494 RLR+LRKLEE +I+ E L AE + + ++L S +QW ++ ++++V+E+F T LG+ Sbjct: 431 RLRNLRKLEEMEIRGEDKKLRAELKDLKAVLASQDEQWKKVGEQVKKVRELFGPKTALGK 490 Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIA 554 RRT F + D A +++A+IE+EPITVV+S++GW+R+LK H DLS L FK D L I+ Sbjct: 491 RRTQFADAPEHDLAAIEEALIEREPITVVVSDKGWVRTLKGHVEDLSNLTFKTDDRLGIS 550 Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614 A TT ++LLL T G+ YTL A L GRGHG+ I+ IDL + +IV+ FV K Sbjct: 551 FFAETTSKLLLLGTHGRFYTLDAQKLPGGRGHGDPIRSFIDLEGDANIVSLFVNTGGRKF 610 Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFS 674 L+ S G F+V E + + NTRKGK L V++ + + V GD VAV+GENRK+LIF Sbjct: 611 LIASHDGQGFVVNEDDCVGNTRKGKQVLNVTAPNEAAAICTVAGDTVAVIGENRKMLIFP 670 Query: 675 IDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRG 734 +DQ+PEM+RG+GVRLQ YKDGG+SD+ F EGLTW DSAGR ++ + +L W G R Sbjct: 671 LDQVPEMARGRGVRLQRYKDGGLSDITTFTAKEGLTWKDSAGREFSATWKELSDWRGNRA 730 Query: 735 GVGSLVPKGFPRSGKF 750 G L PKGFP+S KF Sbjct: 731 DAGRLPPKGFPKSNKF 746 >gi|92117770|ref|YP_577499.1| DNA topoisomerase IV subunit A [Nitrobacter hamburgensis X14] gi|91800664|gb|ABE63039.1| DNA topoisomerase IV subunit A [Nitrobacter hamburgensis X14] Length = 749 Score = 871 bits (2251), Expect = 0.0, Method: Compositional matrix adjust. Identities = 413/731 (56%), Positives = 539/731 (73%), Gaps = 1/731 (0%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 V LR ALEERYLAYALSTI RA+PD RDG KPVHRRI++ M + LD G+AFKKSA+IV Sbjct: 16 VQLRDALEERYLAYALSTIMHRALPDARDGLKPVHRRILYGMRLLRLDPGSAFKKSAKIV 75 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+V+G HPHGDQ++YD++VRLAQ F RYPL+ GQGNFGNIDGD+ AAYRYTEARMT V Sbjct: 76 GDVMGSFHPHGDQAIYDAMVRLAQDFASRYPLVDGQGNFGNIDGDNPAAYRYTEARMTDV 135 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A L+L+G+DEDAV+FR Y+ + EPVV P FPNLLANG GIAVGMAT+IP HN E+ Sbjct: 136 ARLLLEGIDEDAVEFRPNYDGQTREPVVLPGGFPNLLANGAQGIAVGMATAIPPHNAAEL 195 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 C+AAL LID P+ + + LL ++ GPDFPTGGII++S+ESI E+Y GRG FR RA+W E Sbjct: 196 CDAALHLIDKPDATSKSLLRWVKGPDFPTGGIIIDSKESITEAYMTGRGAFRTRAKWNQE 255 Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319 E RG+W IVVTEIP+ VQKSRLIEKIAEL+ K++PL+ DIRDESAED+R+V+ PK+R+ Sbjct: 256 EGARGTWVIVVTEIPWLVQKSRLIEKIAELLNEKKLPLVGDIRDESAEDIRVVIEPKSRN 315 Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379 +DP+L+MES+F L+++E+R LN+NVL G++P+V+ L L+EWL H R+VL RRS++R Sbjct: 316 VDPELVMESLFKLTELESRISLNLNVLIKGKIPKVVGLAECLREWLDHLRDVLLRRSAYR 375 Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSL 439 I+ R+E+L G LIAYLNID++I IIR ED+PKP ++ F LTE Q +AILN+RLRSL Sbjct: 376 KAQIEHRLEVLGGYLIAYLNIDKVIKIIRTEDEPKPALMKAFKLTEVQAEAILNMRLRSL 435 Query: 440 RKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTF 499 RKLEE +I++E NL AE + I+++L S +QW ++A ++R V+++F T LG+RRT F Sbjct: 436 RKLEEMEIRTEDKNLRAELKGINAVLGSEARQWEKVAEQVRTVRDMFGPKTPLGKRRTVF 495 Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHT 559 + D A L+++++E+EP+TVV+S++GW+R+LK H DLS+L FK D L A A T Sbjct: 496 ADAPEHDLAALEESLVEREPVTVVLSDKGWVRTLKGHVEDLSSLSFKTNDKLGFAFFAET 555 Query: 560 TDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSS 619 T ++LL +T+GK Y+L L GRGHGE I+L ID+ + IV+ FV K L+ S Sbjct: 556 TSKLLLFATNGKFYSLDVAKLPGGRGHGEPIRLFIDMEQDAAIVSLFVNTGGRKFLIASH 615 Query: 620 KGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIP 679 +G FIV E + + TRKGK L V + K +V V GD VAV+G N K++IF +DQ+P Sbjct: 616 EGQGFIVNEDDCVGTTRKGKQVLNVEMPNEAKAIVTVAGDQVAVIGTNHKMVIFPLDQVP 675 Query: 680 EMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSL 739 EM+RG+GVRLQ YKD G+SDV F GLTW DSAGR DL W G R G L Sbjct: 676 EMARGRGVRLQKYKDAGLSDVAVFDSKAGLTWKDSAGREQGLRWKDLSDWRGNRADAGRL 735 Query: 740 VPKGFPRSGKF 750 G P+S +F Sbjct: 736 A-HGLPKSNRF 745 >gi|209884981|ref|YP_002288838.1| DNA topoisomerase IV, A subunit [Oligotropha carboxidovorans OM5] gi|209873177|gb|ACI92973.1| DNA topoisomerase IV, A subunit [Oligotropha carboxidovorans OM5] Length = 751 Score = 870 bits (2249), Expect = 0.0, Method: Compositional matrix adjust. Identities = 413/736 (56%), Positives = 545/736 (74%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 ++V+ V+LR ALEERYLAYALSTI RA+PD RDG KPVHRRI++ M + LD + FKK Sbjct: 11 QDVQEVALREALEERYLAYALSTIMHRALPDARDGLKPVHRRILYGMRLLRLDPSSPFKK 70 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 SA+IVG+V+G HPHGDQ++YD+LVRLAQ F RYPL+ GQGNFGNIDGD+ AA RYTE+ Sbjct: 71 SAKIVGDVMGGFHPHGDQAIYDALVRLAQDFSSRYPLVDGQGNFGNIDGDNPAAMRYTES 130 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 R+T VA L+L+G+DEDAV+FR +Y+ D EP V P FPNLLANG GIAVGMAT+IP H Sbjct: 131 RLTDVARLLLEGLDEDAVEFRPSYDGSDKEPTVLPGGFPNLLANGAQGIAVGMATAIPPH 190 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 N E+C+AAL LI P + LL Y+ GPDFPTGGI+V+ +ESI E+Y GRG FRVRA Sbjct: 191 NAAELCDAALHLIAKPATKTQGLLRYVKGPDFPTGGIVVDGQESIAEAYNTGRGAFRVRA 250 Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314 +W E+ RG+W IVVTEIP+ VQKSRLIE+IAEL+ K++ L+ DIRDESAED+RIV+ Sbjct: 251 KWHQEDGARGTWHIVVTEIPWLVQKSRLIERIAELLNEKKLHLVGDIRDESAEDIRIVIE 310 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 PK++++DP++LME++F +D+E+R PLN+NVL GRVP+V+ L L+EWL H R+VL R Sbjct: 311 PKSKNVDPEVLMETLFKQTDLESRIPLNLNVLVKGRVPKVLGLAECLREWLDHLRDVLVR 370 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNL 434 RS+ R I+ R+E+L G LIAYLN+D++I IIR ED+PKPV++ F LT+ Q D+ILN+ Sbjct: 371 RSNHRKNQIEHRLEVLGGYLIAYLNLDKVIKIIRTEDEPKPVLIRTFKLTDLQADSILNM 430 Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494 RLR+LRKLEE +I+ E NL E + I ++L S ++QW +++ ++++V+++F T LG+ Sbjct: 431 RLRNLRKLEEMEIRGEDKNLRTELKGIKAVLASEEEQWKKVSEQVKKVRDLFGPKTPLGK 490 Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIA 554 RRT F D ATL++A +E+EPITVV+S++GW+R+LK H DLS L FK D L I+ Sbjct: 491 RRTQFANAPEHDLATLEEAFVEREPITVVVSDKGWVRTLKGHVEDLSNLTFKTDDRLGIS 550 Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614 A TT ++LLL T G+ YTL A L GRGHG+ I+ IDL + +IV+ FV K Sbjct: 551 FFAETTSKLLLLGTHGRFYTLDAQKLPGGRGHGDPIRSFIDLEGDANIVSLFVNTGGRKF 610 Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFS 674 L+ S G F+V E + + NTRKGK + V+ ++ + V GD VAV+GENRK+LIF Sbjct: 611 LIASHDGQGFVVNEDDCVGNTRKGKQVMNVTMPNEVAAIATVEGDTVAVIGENRKMLIFP 670 Query: 675 IDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRG 734 ++Q+PEM+RG+GVRLQ YKDGG+SDV F EGLTW DSAGR ++ S +L W G R Sbjct: 671 LEQVPEMARGRGVRLQRYKDGGLSDVTTFTAKEGLTWRDSAGREFSASWKELSDWRGNRA 730 Query: 735 GVGSLVPKGFPRSGKF 750 G L PKGFP+S KF Sbjct: 731 DAGRLPPKGFPKSNKF 746 >gi|323137539|ref|ZP_08072616.1| DNA topoisomerase IV, A subunit [Methylocystis sp. ATCC 49242] gi|322397165|gb|EFX99689.1| DNA topoisomerase IV, A subunit [Methylocystis sp. ATCC 49242] Length = 754 Score = 870 bits (2248), Expect = 0.0, Method: Compositional matrix adjust. Identities = 410/731 (56%), Positives = 541/731 (74%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 V LR ALEERYL YALSTI +RA+PD RDG KPVHRRI++ M + LD GA FKK A+IV Sbjct: 23 VDLREALEERYLRYALSTITDRALPDARDGLKPVHRRILYGMHVLRLDPGAPFKKCAKIV 82 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+V+G HPHGDQ++YD+LVRLAQ F RYPL+ GQGNFGNIDGDSAAAYRYTEARMT V Sbjct: 83 GDVMGSFHPHGDQAIYDALVRLAQDFSSRYPLVDGQGNFGNIDGDSAAAYRYTEARMTSV 142 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A +L+G+DEDA+DF+ Y+ E+ EP+V PS PN+LANG GIAVGMATSIP HN+ E+ Sbjct: 143 ARGLLEGIDEDAIDFKPNYSGEEKEPIVLPSALPNMLANGAQGIAVGMATSIPPHNLAEL 202 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 C+AAL LI + + E+LL ++ GPDFPTGGIIV+ RE IVE+YR GRG FRVRARW E Sbjct: 203 CDAALYLISHRNATSEQLLTFVQGPDFPTGGIIVDRREEIVEAYRTGRGSFRVRARWTKE 262 Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319 E+ RG W VVTEIPY VQKSRLIEK+AELI +++PL+ D+RDESAEDVRIVL P++R+ Sbjct: 263 ELPRGGWVAVVTEIPYGVQKSRLIEKLAELISERKLPLVADVRDESAEDVRIVLEPRSRN 322 Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379 +D L+ME++F LS++ETRF +NMNVL G P+V+ LD L++WL HRREVL RRS R Sbjct: 323 IDAALMMETLFKLSELETRFGMNMNVLVDGVTPRVVSLDEALRQWLDHRREVLQRRSRHR 382 Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSL 439 + AI RR+E L+G++I +LN+DE+I IIR ED K + F LT+ QVD IL+ RLRSL Sbjct: 383 LAAILRRIEQLEGMIIVFLNLDEVIRIIREEDDAKGELKKAFKLTDLQVDYILDTRLRSL 442 Query: 440 RKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTF 499 RKLEE +++ EL L E+ I++LL +QW IA ++RE+K+I+ T++G+RRTTF Sbjct: 443 RKLEEMELRRELKELTDERADIEALLADDGRQWKTIAAQVRELKKIYGPQTEIGKRRTTF 502 Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHT 559 + A L +AMIE+EPITVV+S +GWIR+LK H DLS L FK D L + A T Sbjct: 503 EDAPAAVDLDLAEAMIEREPITVVVSKKGWIRALKGHVQDLSTLQFKGDDELDTSFFAQT 562 Query: 560 TDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSS 619 T +IL+L+T+GKAYTL A L GRGHGE I+L D++ + + ++ LL+V+ Sbjct: 563 TSKILVLATNGKAYTLDASKLPGGRGHGEPIRLFADIDEDASVARVLPHEPQASLLLVAD 622 Query: 620 KGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIP 679 G F+V + +++++T+KG+ L V ++K+V + GDHVA++GENRKLL+F +++ P Sbjct: 623 DGRGFVVAQDDLLSSTKKGRAVLNVEPPARLKVVTEAAGDHVAIIGENRKLLVFPLEEAP 682 Query: 680 EMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSL 739 M+RGKGVR+Q YKDGG++D F + +GLTW DS+GR + + +L W+G R G L Sbjct: 683 RMARGKGVRMQRYKDGGVADAKVFSLADGLTWTDSSGRVFTVEKLELKEWIGHRAEAGRL 742 Query: 740 VPKGFPRSGKF 750 P+GFPR+ +F Sbjct: 743 PPRGFPRNNRF 753 >gi|75676105|ref|YP_318526.1| DNA topoisomerase IV subunit A [Nitrobacter winogradskyi Nb-255] gi|74420975|gb|ABA05174.1| DNA topoisomerase IV subunit A [Nitrobacter winogradskyi Nb-255] Length = 749 Score = 868 bits (2242), Expect = 0.0, Method: Compositional matrix adjust. Identities = 412/734 (56%), Positives = 538/734 (73%), Gaps = 1/734 (0%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + V LR ALEERYLAYALSTI RA+PD RDG KPVHRRI++ M + LD G+AFKKSA Sbjct: 13 IAEVQLREALEERYLAYALSTIMHRALPDARDGLKPVHRRILYGMRLLRLDPGSAFKKSA 72 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 +IVG+V+G HPHGDQ++YD++VRLAQ F RYPL+ GQGNFGNIDGD+ AAYRYTEARM Sbjct: 73 KIVGDVMGSFHPHGDQAIYDAMVRLAQDFASRYPLVDGQGNFGNIDGDNPAAYRYTEARM 132 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 T VA L+L G+DEDAV+FR Y+ + EPVV P FPNLLANG GIAVGMAT+IP HN Sbjct: 133 TDVARLLLDGIDEDAVEFRPNYDGQSREPVVLPGGFPNLLANGAQGIAVGMATAIPPHNA 192 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+C+AAL LID P+ LL+++ GPDFPTGGII++S+ESI E+Y GRG FR RA+W Sbjct: 193 AELCDAALHLIDKPDAKSTSLLKWVKGPDFPTGGIIIDSKESIAEAYATGRGAFRTRAKW 252 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316 EE RG+W IVVTEIP+ VQKSRLIEKIAEL+ K++PL+ DIRDESAED+R+V+ PK Sbjct: 253 HREEGARGTWVIVVTEIPWLVQKSRLIEKIAELLNEKKLPLVGDIRDESAEDIRVVIEPK 312 Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376 +R++DP+L+MES+F L+++E+R LN+NVL G++P+V+ L L+EWL H R+VL RRS Sbjct: 313 SRNVDPELVMESLFRLTELESRISLNLNVLIKGKIPKVVGLAECLREWLDHLRDVLLRRS 372 Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRL 436 + R I+ R+E+L G LIAYLNIDE+I IIR ED+PKP ++ F LTE Q +AILN+RL Sbjct: 373 AHRKAQIEHRLEVLGGYLIAYLNIDEVIRIIRTEDEPKPALIKAFKLTEVQAEAILNMRL 432 Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496 RSLRKLEE +I++E +L AE + I+++L S +QW ++ ++R V+++F T LG+RR Sbjct: 433 RSLRKLEEMEIRTEDKDLRAELKGINAVLGSEARQWEKVGEQVRNVRDMFGPRTPLGKRR 492 Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALH 556 T F + D A L+++++E+EP+TVV+S++GW+R+LK H DLS L FK D L A Sbjct: 493 TVFADAPEHDLAALEESLVEREPVTVVVSDKGWVRTLKGHVEDLSNLSFKTDDKLGFAFF 552 Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLV 616 A TT ++LL +T+GK Y+L L GRGHGE I+L IDL + IV+ FV+ K L+ Sbjct: 553 AETTSKLLLFATNGKFYSLDVAKLPGGRGHGEPIRLFIDLEQDAAIVSLFVHTGGRKFLI 612 Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSID 676 S +G F+V E + ++ TRKGK L V + K + V GD VAV+G N K+++F +D Sbjct: 613 ASHEGQGFVVNEDDCVSTTRKGKQVLNVEMPNEAKAITTVAGDQVAVIGTNHKMVVFPLD 672 Query: 677 QIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGV 736 Q+PEM+RG+GVRLQ YKD G+SDV F GLTW DSAGR + S DL W G R Sbjct: 673 QVPEMARGRGVRLQKYKDAGLSDVAVFNSKIGLTWKDSAGREQSLSWKDLSDWRGNRADA 732 Query: 737 GSLVPKGFPRSGKF 750 G L G P+S KF Sbjct: 733 GRLA-HGLPKSNKF 745 >gi|85716280|ref|ZP_01047254.1| DNA topoisomerase IV subunit A [Nitrobacter sp. Nb-311A] gi|85696952|gb|EAQ34836.1| DNA topoisomerase IV subunit A [Nitrobacter sp. Nb-311A] Length = 749 Score = 865 bits (2236), Expect = 0.0, Method: Compositional matrix adjust. Identities = 411/734 (55%), Positives = 536/734 (73%), Gaps = 1/734 (0%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + V LR ALEERYLAYALSTI RA+PD RDG KPVHRRI++ M + LD G+AFKKSA Sbjct: 13 IHEVQLREALEERYLAYALSTIMHRALPDARDGLKPVHRRILYGMRLLRLDPGSAFKKSA 72 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 +IVG+V+G HPHGDQ++YD++VRLAQ F RYPL+ GQGNFGNIDGD+ AAYRYTEARM Sbjct: 73 KIVGDVMGSFHPHGDQAIYDAMVRLAQDFASRYPLVDGQGNFGNIDGDNPAAYRYTEARM 132 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 T VA L+L G+DEDAV+FR Y+ + EPVV P FPNLLANG GIAVGMAT+IP HN Sbjct: 133 TDVARLLLDGIDEDAVEFRPNYDGQSREPVVLPGGFPNLLANGAQGIAVGMATAIPPHNA 192 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+C+AAL LID P+ + LL+++ GPDFPTGGII++S+ESI ++Y GRG FR RA+W Sbjct: 193 AELCDAALHLIDKPDAKPKALLKWVKGPDFPTGGIIIDSKESIADAYTTGRGAFRTRAKW 252 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316 E+ RG+W IVVT+IP+ VQKSRLIEKIAEL+ K++PL+ DIRDESAED+R+V+ PK Sbjct: 253 HREDGARGTWVIVVTQIPWLVQKSRLIEKIAELLNDKKLPLVGDIRDESAEDIRVVIEPK 312 Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376 +R++DP+L+MES+F L+++E+R LN+NVL GR+P+V+ L L+EWL H R+VL RRS Sbjct: 313 SRNVDPELVMESLFKLTELESRISLNLNVLIKGRIPKVVGLAECLREWLDHLRDVLLRRS 372 Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRL 436 + R I+ R+E+L G LIAYLNID++I IIR ED+PKP ++ F LTE Q DAILN+RL Sbjct: 373 AHRKAQIEHRLEVLGGYLIAYLNIDKVIKIIRTEDEPKPALIKAFKLTEVQADAILNMRL 432 Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496 RSLRKLEE +I++E NL AE + I+++L S +QW ++ ++R V+++F T LG+RR Sbjct: 433 RSLRKLEEMEIRTEDKNLRAELKGINAVLGSEARQWEKVGEQVRNVRDMFGPKTPLGKRR 492 Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALH 556 T F + D A L+++++E+EP+TVV+S++GW+R+LK H DLS L FK D L A Sbjct: 493 TVFADAPEHDLAALEESLVEREPVTVVVSDKGWVRTLKGHVEDLSNLSFKTDDKLGFAFL 552 Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLV 616 A TT ++LL +T+GK Y+L L GRGHGE I+L IDL + IV+ FV K L+ Sbjct: 553 AETTSKLLLFATNGKFYSLDVAKLPGGRGHGEPIRLFIDLEQDAAIVSLFVNTGGRKFLI 612 Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSID 676 S +G F+V E + + TRKGK L V + K + V GD VAV+G N K++IF +D Sbjct: 613 ASHEGQGFVVNEDDCVGTTRKGKQVLSVEMPNEAKAITTVAGDQVAVIGTNHKMVIFPLD 672 Query: 677 QIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGV 736 Q+PEM+RG+GVRLQ Y+D G+SDV F GLTW DSAGR S DL W G R Sbjct: 673 QVPEMARGRGVRLQKYRDAGLSDVAVFDSKTGLTWRDSAGREQGLSWKDLSDWRGNRADA 732 Query: 737 GSLVPKGFPRSGKF 750 G L G P+S KF Sbjct: 733 GRLA-HGLPKSNKF 745 >gi|148256016|ref|YP_001240601.1| DNA topoisomerase IV subunit A [Bradyrhizobium sp. BTAi1] gi|146408189|gb|ABQ36695.1| DNA topoisomerase IV subunit A [Bradyrhizobium sp. BTAi1] Length = 750 Score = 863 bits (2230), Expect = 0.0, Method: Compositional matrix adjust. Identities = 404/734 (55%), Positives = 540/734 (73%), Gaps = 1/734 (0%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + V+LR ALEERYLAYALSTI RA+PD RDG KPVHRRI++ M + LD G AFKKSA Sbjct: 13 IHEVALREALEERYLAYALSTIMHRALPDARDGLKPVHRRILYGMRLLRLDPGTAFKKSA 72 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 +IVG+V+G HPHGDQ++YD++VRLAQ F RYPL+ GQGNFGNIDGD+AAAYRYTEARM Sbjct: 73 KIVGDVMGSFHPHGDQAIYDAMVRLAQDFSSRYPLVDGQGNFGNIDGDNAAAYRYTEARM 132 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 T VA L+L+G+DED V+FR Y+ + EPVV P FPNLLANG GIAVGMATSIP HN Sbjct: 133 TDVARLLLEGIDEDGVEFRPNYDGQSKEPVVLPGGFPNLLANGAQGIAVGMATSIPPHNA 192 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+C+AAL LI+ P+ LL ++ GPDFPTGG +++S+ESI+E+Y GRG FRVRA+W Sbjct: 193 AELCDAALHLIEKPDAKSRALLRWVKGPDFPTGGTVIDSKESIIEAYTTGRGSFRVRAKW 252 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316 EE RG+W +V+TEIPY VQKSRL+EKIAEL+ K++PL+ D+RDESAEDVR+V+ PK Sbjct: 253 KQEEGNRGTWIVVITEIPYLVQKSRLVEKIAELLNEKKLPLVGDVRDESAEDVRLVIEPK 312 Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376 ++++DP L+MES+F L+D+E++ PLN+NVL G++P+V+ L L+EWL H R+VL RRS Sbjct: 313 SKNVDPALMMESLFRLTDLESKIPLNLNVLIKGKIPKVVGLAECLREWLDHLRDVLLRRS 372 Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRL 436 ++R + I+ R+EIL G LIAYLNIDE+I IIR ED+PKPV++ F LTE Q +AILN+RL Sbjct: 373 NYRKKQIENRLEILGGYLIAYLNIDEVIRIIRTEDEPKPVLMKTFKLTEVQAEAILNMRL 432 Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496 RSLRKLEE +I++E NL E + I+ LL S + QW ++ +++ V+++F T LGRRR Sbjct: 433 RSLRKLEEMEIRTEDKNLRGELKGINELLASEQVQWAKVGEQVKTVRDLFGPKTPLGRRR 492 Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALH 556 T F + D A +++A IE+EP+TVV+S +GW+R+LK H DLS L FK D L A Sbjct: 493 TNFADAPEHDLAAIEEAFIEREPVTVVVSEKGWVRTLKGHVADLSNLQFKTDDQLGQAFF 552 Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLV 616 A T ++LL +++GK Y+L G L GRGHGE I++ IDL+ + IV+ FV K L+ Sbjct: 553 AENTSKVLLFASNGKFYSLDVGKLPGGRGHGEPIRMFIDLDQDASIVSMFVSKGERKFLI 612 Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSID 676 +S G F+V+E + ++NTRKGK L V++ + + + V GD VAV+G N K+++F +D Sbjct: 613 AASDGQGFVVKEEDCVSNTRKGKQVLNVTAPAEARAITTVQGDQVAVIGTNHKMVVFGLD 672 Query: 677 QIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGV 736 Q+PEM+RG+GVRLQ Y +SDV F+ +GL W DSAGR S +L + G R Sbjct: 673 QVPEMARGRGVRLQKYTSAQLSDVTTFEQKQGLAWKDSAGRDQGLSWKELADYRGNRADA 732 Query: 737 GSLVPKGFPRSGKF 750 G + +G P+S KF Sbjct: 733 GRIA-QGLPKSNKF 745 >gi|158423631|ref|YP_001524923.1| DNA topoisomerase IV subunit A [Azorhizobium caulinodans ORS 571] gi|158330520|dbj|BAF88005.1| gram negative topoisomerase IV subunit A [Azorhizobium caulinodans ORS 571] Length = 745 Score = 863 bits (2229), Expect = 0.0, Method: Compositional matrix adjust. Identities = 407/735 (55%), Positives = 544/735 (74%), Gaps = 2/735 (0%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 +V+ V L+ ALEERYLAYALSTI RA+PD RDG KPVHRRI+HAM ++ LD G+ FKK Sbjct: 12 SVEPVDLKAALEERYLAYALSTIMHRALPDARDGLKPVHRRILHAMRQLKLDPGSGFKKC 71 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 AR+VG+VIGK HPHGDQ+VYD+LVRLAQ F QRYPL+ GQGNFGN+DGD+AAA RYTEAR Sbjct: 72 ARVVGDVIGKFHPHGDQAVYDALVRLAQDFAQRYPLVDGQGNFGNVDGDNAAAMRYTEAR 131 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 +T+ A L+L G+D+DAVDFR TY+ + EPVV P+ FPNLLANG+ GIAVGMATSIP HN Sbjct: 132 LTETARLLLDGIDDDAVDFRPTYDGSEEEPVVLPAAFPNLLANGSQGIAVGMATSIPPHN 191 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 E+ +A+L L+++P LL+++ GPDFPTGGI+VE E+Y GRG FRVRAR Sbjct: 192 AAELLDASLHLLEHPNAPASDLLQFVPGPDFPTGGILVEDPVGTAEAYATGRGAFRVRAR 251 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315 W EE GRG++ +VVTEIPY V KSRL+EKIAEL+ K++PLL D+RDESAED+R+VL P Sbjct: 252 WHKEETGRGTYVVVVTEIPYGVPKSRLVEKIAELLTDKKLPLLADVRDESAEDIRLVLEP 311 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 + R++D ++LMES+F L+++E+R LNMNVL G+VP+V+ L L+EWL HRREVL RR Sbjct: 312 RARTVDAEVLMESLFKLTELESRVSLNMNVLVRGQVPKVLSLADALREWLDHRREVLLRR 371 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435 S R+ I R+E+L G LIAYLN+DE+I IIR ED+PK ++ F LT+ Q ++ILN+R Sbjct: 372 SRNRLSQIAHRLEVLGGYLIAYLNLDEVIRIIREEDEPKVELMRTFELTDLQAESILNMR 431 Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495 LRSLR+LEE +++ E L E+E+++ L+ S QW I EIRE ++ + T++GRR Sbjct: 432 LRSLRRLEEMELRKEHAALTKEQEQLNKLVASEAAQWKAIGKEIRETRKTYGPDTEIGRR 491 Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555 RT F ++ +A++E+EPIT+V+S +GWIR+LK H D++ + FK D+L A Sbjct: 492 RTDFAVPPDVHESAFTEALVEREPITIVMSAKGWIRALKGHVADVTGVPFKGDDTLAHAF 551 Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615 +A TT +I++LS++G+ +TL A L GRGHGE ++L+I+L +IV+ F + KL+ Sbjct: 552 YAETTSKIMVLSSNGRFFTLDAAKLPGGRGHGEPVRLMIELEQEAEIVSVFAHRPGGKLI 611 Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSI 675 V S +G F+V E + +ANTRKGK L V + + L V GD VAV+G+NRKLL+F I Sbjct: 612 VASREGRGFVVAEDDCLANTRKGKQVLGVDAPDAAVLAVPADGDTVAVIGDNRKLLLFPI 671 Query: 676 DQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGG 735 Q+PEM+RG+GVRLQ YK+GG+SD+ F +GLTW DS+GR++ +E LL W G+R Sbjct: 672 AQVPEMTRGRGVRLQRYKEGGLSDLKVFNRADGLTWEDSSGRTWTVTE--LLDWQGERAS 729 Query: 736 VGSLVPKGFPRSGKF 750 G L PKGFPR+ KF Sbjct: 730 SGRLPPKGFPRNNKF 744 >gi|146341364|ref|YP_001206412.1| DNA topoisomerase IV subunit A [Bradyrhizobium sp. ORS278] gi|146194170|emb|CAL78191.1| DNA topoisomerase IV, subunit A [Bradyrhizobium sp. ORS278] Length = 750 Score = 861 bits (2224), Expect = 0.0, Method: Compositional matrix adjust. Identities = 403/734 (54%), Positives = 539/734 (73%), Gaps = 1/734 (0%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + V+LR ALEERYLAYALSTI RA+PD RDG KPVHRRI++ M + LD G AFKKSA Sbjct: 13 IHEVALRDALEERYLAYALSTIMHRALPDARDGLKPVHRRILYGMRLLRLDPGTAFKKSA 72 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 +IVG+V+G HPHGDQ++YD++VRLAQ F RYPL+ GQGNFGNIDGD+ AAYRYTEARM Sbjct: 73 KIVGDVMGSFHPHGDQAIYDAMVRLAQDFSSRYPLVDGQGNFGNIDGDNPAAYRYTEARM 132 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 T VA L+L+G+DED V+FR Y+ + EPVV P FPNLLANG GIAVGMATSIP HN Sbjct: 133 TDVARLLLEGIDEDGVEFRPNYDGQSKEPVVLPGGFPNLLANGAQGIAVGMATSIPPHNA 192 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+C+AAL LI+ P+ LL ++ GPDFPTGG +++S+ESI+E+Y GRG FRVRA+W Sbjct: 193 AELCDAALHLIEKPDAKSRALLRWVKGPDFPTGGTVIDSKESIIEAYTTGRGSFRVRAKW 252 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316 EE RG+W +V+TEIP+ VQKSRL+EKIAEL+ K++PL+ D+RDESAEDVR+V+ PK Sbjct: 253 KQEEGNRGTWVVVITEIPFLVQKSRLVEKIAELLNEKKLPLVGDVRDESAEDVRLVIEPK 312 Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376 ++++DP L+MES+F L+D+E++ PLN+NVL G++P+V+ L L+EWL H R+VL RRS Sbjct: 313 SKNVDPALMMESLFRLTDLESKIPLNLNVLIKGKIPKVVGLAECLREWLDHLRDVLLRRS 372 Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRL 436 ++R + I+ R+EIL G LIAYLNIDE+I IIR ED+PKPV++ F LTE Q +AILN+RL Sbjct: 373 NYRKKQIENRLEILGGYLIAYLNIDEVIRIIRTEDEPKPVLMKTFKLTEVQAEAILNMRL 432 Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496 RSLRKLEE +I++E NL E + I+ LL S QW ++ +++ V+++F T LG+RR Sbjct: 433 RSLRKLEEMEIRTEDKNLRGELKGINELLGSEPLQWAKVGEQVKTVRDMFGPKTPLGKRR 492 Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALH 556 T F + D A +++A IE+EP+TVV+S +GW+R+LK H DLS L FK D L + Sbjct: 493 TNFADAPEHDLAAIEEAFIEREPVTVVVSEKGWVRTLKGHVADLSNLQFKTDDQLGQSFF 552 Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLV 616 A T ++LL +T+GK Y+L G L GRGHGE I++ IDL+ + IV+ FV K LV Sbjct: 553 AENTSKVLLFATNGKFYSLDVGKLPGGRGHGEPIRMFIDLDQDASIVSMFVTKGERKFLV 612 Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSID 676 +S G F+V+E + ++NTRKGK L V++ + + + VTGD VAV+G N K+++F +D Sbjct: 613 AASDGQGFVVKEEDCVSNTRKGKQVLNVTAPAEARAICTVTGDQVAVIGTNHKMVVFGLD 672 Query: 677 QIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGV 736 Q+PEM+RG+GVRLQ Y +SDV F+ +GL W DSAGR S +L + G R Sbjct: 673 QVPEMARGRGVRLQKYTSAQLSDVTTFEQKQGLAWKDSAGRDQGLSWKELADYRGNRADA 732 Query: 737 GSLVPKGFPRSGKF 750 G + +G P+S KF Sbjct: 733 GRIA-QGLPKSNKF 745 >gi|296447775|ref|ZP_06889689.1| DNA topoisomerase IV, A subunit [Methylosinus trichosporium OB3b] gi|296254694|gb|EFH01807.1| DNA topoisomerase IV, A subunit [Methylosinus trichosporium OB3b] Length = 750 Score = 859 bits (2220), Expect = 0.0, Method: Compositional matrix adjust. Identities = 401/736 (54%), Positives = 537/736 (72%), Gaps = 1/736 (0%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 E + V LR ALEERYL YALSTI RA+PD RDG KPVHRRI++ M + L A FKK Sbjct: 15 EALIPVELREALEERYLTYALSTITGRALPDARDGLKPVHRRILYGMQTLRLAPDAPFKK 74 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 A+IVG+V+G HPHGDQ++YD+LVRLAQ F RYPL+ GQGNFGN+DGD+AAAYRYTEA Sbjct: 75 CAKIVGDVMGSFHPHGDQAIYDALVRLAQDFSSRYPLVDGQGNFGNVDGDAAAAYRYTEA 134 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 RMT VA L+L+G+DEDA+DFR Y+ E+ EPVV P+ PNLLANG GIAVGMATS+P H Sbjct: 135 RMTAVARLLLEGIDEDAIDFRPNYSGEEQEPVVLPAALPNLLANGAQGIAVGMATSVPPH 194 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 N+ E+C+AAL LI + E + E+L+ ++ GPDFPTGG++V+ R IVE+YR GRG FR+RA Sbjct: 195 NLAELCDAALYLISHREATAEQLMNFVQGPDFPTGGVVVDPRPQIVETYRTGRGSFRLRA 254 Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314 RW EE RG W VVTEIPY VQKSRLIEK+AELI+ K+ PL D+RDESAEDVR+V+ Sbjct: 255 RWHKEETARGQWVAVVTEIPYGVQKSRLIEKLAELIVDKKAPLAGDVRDESAEDVRVVIE 314 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 P+ R++DP L+ME++F LS++E RFP+NMNVL G VP+V+ LD L++WL HRREVL R Sbjct: 315 PRARAVDPALMMETLFKLSELEIRFPVNMNVLVDGAVPRVVSLDEALRQWLDHRREVLER 374 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNL 434 RS R+ AI RR+E+L G++I +LN+DE+I IIR ED+PK + S F LT+ QVD IL+ Sbjct: 375 RSRHRLAAIIRRLEVLDGMIIVFLNLDEVIRIIREEDEPKQALKSAFDLTDVQVDYILDT 434 Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494 RLR+LR+LEE +++ E + L+ E+ +I+ LL +QW I +IRE+K+ L + Sbjct: 435 RLRALRRLEEMELRKEREKLIEERAEIEGLLAEEAKQWKAITAQIRELKKTVGDPR-LAK 493 Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIA 554 RRTTF + A L +A+IE+EPITVV+S +GWIR+LK H DLS L FK D+L + Sbjct: 494 RRTTFEDAPEATDIDLAEALIEREPITVVVSQKGWIRALKGHVSDLSQLQFKGDDALDFS 553 Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614 A TT ++L L+++GKA+TL A L GRGHGE I+L+ +++ + IV F++ L Sbjct: 554 FFAQTTSKVLALASNGKAFTLDASKLPGGRGHGEPIRLMAEIDEDAAIVKVFLHTPDALL 613 Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFS 674 L+VS G F+V +++++A TRKG+ V K+K+V GDHVA++GENRKLL+F Sbjct: 614 LLVSDDGRGFVVSQNDLVATTRKGRAVFNVDPPAKLKIVAPAEGDHVAIIGENRKLLVFP 673 Query: 675 IDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRG 734 + + P+M+RGKGVRLQ YKDGG++D F + +GLTW D++ R + + +L W+ R Sbjct: 674 LSEAPQMARGKGVRLQRYKDGGVADAKVFALADGLTWTDTSARVHTVDKRELAEWVAHRA 733 Query: 735 GVGSLVPKGFPRSGKF 750 G L P+GFP++ +F Sbjct: 734 EAGRLPPRGFPKNNRF 749 >gi|220923263|ref|YP_002498565.1| DNA topoisomerase IV subunit A [Methylobacterium nodulans ORS 2060] gi|219947870|gb|ACL58262.1| DNA topoisomerase IV, A subunit [Methylobacterium nodulans ORS 2060] Length = 748 Score = 858 bits (2218), Expect = 0.0, Method: Compositional matrix adjust. Identities = 413/735 (56%), Positives = 538/735 (73%), Gaps = 1/735 (0%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 +++V L+ ALEERYLAYALSTI RA+PD RDG KPVHRRI++ M + LD AFKK Sbjct: 13 GIESVELKAALEERYLAYALSTIMHRALPDARDGLKPVHRRILYGMRLLRLDPNTAFKKC 72 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 A+IVG+V+G HPHGDQ++YD+LVRL+Q F QRYPL+ GQGNFGNIDGD AAYRYTEAR Sbjct: 73 AKIVGDVMGDFHPHGDQAIYDALVRLSQDFAQRYPLVDGQGNFGNIDGDGPAAYRYTEAR 132 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 +T+VA L+L G+DEDAVDFR +YN E EPVV P FPNLLANG+ GIAVGMATSIP HN Sbjct: 133 LTEVARLLLDGIDEDAVDFRPSYNGEKDEPVVLPGAFPNLLANGSQGIAVGMATSIPPHN 192 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 E+C+AAL LI +P + E+L ++ GPDFPTGGI+V+S E+I E+YR GRG FRVRAR Sbjct: 193 AAELCDAALYLITHPTATSEQLTSFVKGPDFPTGGIVVDSAEAIAEAYRTGRGAFRVRAR 252 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315 W E++GRG+W +VVTEIPY V K+RLIEK+AEL+ +++PLL D+RDESAEDVRIVL P Sbjct: 253 WTREDLGRGAWNVVVTEIPYGVPKARLIEKMAELLTERKLPLLADVRDESAEDVRIVLEP 312 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 ++R++DP +LMES+F L+++E+RF LNMNVL G+VP+V+ L L+EWL HRR VL RR Sbjct: 313 RSRTVDPVVLMESLFRLTELESRFSLNMNVLVSGQVPRVVGLAEALREWLDHRRTVLQRR 372 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435 S R+ I++R+EIL GLLI YL++D++I IIR ED+PK ++ F LTE Q +AIL+ R Sbjct: 373 SRHRLAQIEKRLEILGGLLIVYLDLDQVIRIIREEDEPKAELMRYFQLTEVQANAILDTR 432 Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495 LRSLRKLEE ++K E L AEK +D+LL S QW IA ++R VK+ F T LGRR Sbjct: 433 LRSLRKLEEMELKREQAALTAEKADLDALLGSEALQWKSIAAQVRAVKKTFGPETPLGRR 492 Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555 RTT L +AMIE+EPITV++S +GWIRSLK H DLS + FK D+LK++ Sbjct: 493 RTTLENPPDTSDLDLAEAMIEREPITVIVSQKGWIRSLKGHVADLSGVQFKGDDALKLSF 552 Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615 TT ++L+L+++GK +TL A L GRG G+ I+L+ DL+ DIVT + Y + KLL Sbjct: 553 PTETTAKLLVLASNGKVFTLDAAKLPGGRGFGDPIRLMADLDEGTDIVTVWPYRAGAKLL 612 Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV-TGDHVAVVGENRKLLIFS 674 + G F ++ANTRKGK + + + V+V GDHVA GENR L++F Sbjct: 613 FGTIDGRGFTTGSDGLVANTRKGKQVVALDGAAVVTHCVEVGEGDHVAACGENRLLVVFP 672 Query: 675 IDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRG 734 + +IPEM+RGKGVRLQ Y++ ++ + FK+ EGLTW DSAGR+ + +L W+G RG Sbjct: 673 LTEIPEMARGKGVRLQRYRESTLAYLTVFKLAEGLTWPDSAGRTRSVVGEELAKWVGHRG 732 Query: 735 GVGSLVPKGFPRSGK 749 VG + P+GFPRS + Sbjct: 733 TVGIMAPRGFPRSNR 747 >gi|170742439|ref|YP_001771094.1| DNA topoisomerase IV subunit A [Methylobacterium sp. 4-46] gi|168196713|gb|ACA18660.1| DNA topoisomerase IV, A subunit [Methylobacterium sp. 4-46] Length = 748 Score = 855 bits (2208), Expect = 0.0, Method: Compositional matrix adjust. Identities = 410/736 (55%), Positives = 539/736 (73%), Gaps = 1/736 (0%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 + ++ V L+ ALEERYLAYALSTI RA+PD RDG KPVHRRI++AM + LD G A KK Sbjct: 12 DGIENVELKTALEERYLAYALSTIMHRALPDARDGLKPVHRRILYAMRMLRLDPGTAHKK 71 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 AR+VG+VIGK HPHGD +VYD+LVRLAQ F QRYPL+ GQGNFGNIDGD+ AA RYTE Sbjct: 72 CARVVGDVIGKYHPHGDTAVYDALVRLAQDFAQRYPLVDGQGNFGNIDGDNPAAQRYTEC 131 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 RMT+VA L+L G++EDAVDFR Y+ ++ EPVV P+ FPNLLANG GIAVGMATSIP H Sbjct: 132 RMTEVARLLLDGMEEDAVDFRPNYDGQEEEPVVLPAAFPNLLANGAQGIAVGMATSIPPH 191 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 N E+C+AAL LI +P + +L ++ GPDFPTGG++++S E+I E+YR GRG FRVRA Sbjct: 192 NAAELCDAALYLITHPTATSAQLTSFVKGPDFPTGGVVIDSAEAIAEAYRTGRGAFRVRA 251 Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314 RW E++GRG W +VVTEIPY V K+RLIEK+AEL+ K++PLL D+RDESAEDVRIVL Sbjct: 252 RWTREDLGRGLWQVVVTEIPYGVPKARLIEKMAELLTEKKLPLLADVRDESAEDVRIVLE 311 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 P++R++DP +LMES+F L+++E+RF LNMNVL G+VP+V+ L +L+EWL HRR VL R Sbjct: 312 PRSRTVDPVVLMESLFRLTELESRFSLNMNVLMSGQVPRVVGLAEVLREWLDHRRTVLQR 371 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNL 434 RS R+ I+RR+EIL GLLI YL++D++I IIR ED+PK ++ F LTE Q +AIL+ Sbjct: 372 RSRHRLGQIERRLEILGGLLIVYLDLDQVIRIIREEDEPKAELMRHFQLTEVQANAILDT 431 Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494 RLRSLRKLEE ++K E L AEK +D+LL+S QW IA ++R VK+ F T LGR Sbjct: 432 RLRSLRKLEEMELKREQAALTAEKADLDALLDSEPLQWKSIAGQVRAVKKTFGPETALGR 491 Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIA 554 RRTT L +AMIE+EPITV++S +GWIR+LK H DLS + FK D+LK++ Sbjct: 492 RRTTLENPPDTSDLDLAEAMIEREPITVIVSQKGWIRALKGHVADLSTVQFKGDDALKLS 551 Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614 TT ++L+L+T+GK +TL A L GRG G+ I+L+ DL+ DIVT F + + KL Sbjct: 552 FPTETTAKLLVLATNGKVFTLDAAKLPGGRGFGDPIRLMADLDEGSDIVTVFPFRAGAKL 611 Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV-TGDHVAVVGENRKLLIF 673 L +S G F ++ANTRKGK + + + V+ GDHVAV GENR L++F Sbjct: 612 LFGTSDGRGFTTLADGLVANTRKGKQVVALDGAATVTHCVEAGAGDHVAVCGENRLLVVF 671 Query: 674 SIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKR 733 + +IP+M+RGKGVRLQ Y++ ++ + F++ EGL+W DSAGR+ +L W+G R Sbjct: 672 PLTEIPDMARGKGVRLQRYRESTLAYLSVFRLAEGLSWPDSAGRTRTVVGEELAKWVGHR 731 Query: 734 GGVGSLVPKGFPRSGK 749 G VG++ P+GFPRS + Sbjct: 732 GTVGAMAPRGFPRSNR 747 >gi|170748445|ref|YP_001754705.1| DNA topoisomerase IV subunit A [Methylobacterium radiotolerans JCM 2831] gi|170654967|gb|ACB24022.1| DNA topoisomerase IV, A subunit [Methylobacterium radiotolerans JCM 2831] Length = 748 Score = 843 bits (2177), Expect = 0.0, Method: Compositional matrix adjust. Identities = 404/736 (54%), Positives = 528/736 (71%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 + +++V L+ ALEERYLAYALSTI RA+PD RDG KPVHRRI++ M + LD A KK Sbjct: 11 DGIESVELKSALEERYLAYALSTIMHRALPDARDGLKPVHRRILYGMRLLRLDPTTAHKK 70 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 A+IVG+V+G HPHGDQ++YD+LVRL+Q F QRYPL+ GQGNFGNIDGD AAYRYTEA Sbjct: 71 CAKIVGDVMGDFHPHGDQAIYDALVRLSQDFAQRYPLVDGQGNFGNIDGDGPAAYRYTEA 130 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 R+T+VA L+L G+DED VDFR +YN E EPVV P+ FPNLLANG+ GIAVGMATSIP H Sbjct: 131 RLTEVARLLLDGIDEDTVDFRPSYNGEKEEPVVLPAAFPNLLANGSQGIAVGMATSIPPH 190 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 N E+C+AAL LI++PE + +L +++ GPDFPTGGI+++S ES+ E+YR GRG FRVRA Sbjct: 191 NAAELCDAALYLINHPEATSGQLAKFVQGPDFPTGGILIDSAESVAEAYRTGRGAFRVRA 250 Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314 RW E++GRG+W IVVTEIPY + K RLIEK+AEL+ K++PLL D+RDESAEDVRIVL Sbjct: 251 RWAKEDLGRGTWNIVVTEIPYGIPKGRLIEKMAELLQEKKLPLLADVRDESAEDVRIVLE 310 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 P++R++DP +LMES+F L+++E R PLN+NVL G VP+V+ L L+EW+ HRR VL R Sbjct: 311 PRSRTVDPVILMESLFRLTELEARIPLNLNVLVGGLVPKVIGLAECLREWVDHRRVVLQR 370 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNL 434 RS +R+ IDRR+EIL GLLI YL++DE+I IIR ED+PK +++RF LTE Q +AIL+ Sbjct: 371 RSRYRLGQIDRRLEILGGLLIVYLDLDEVIRIIREEDEPKAALMARFELTEIQANAILDT 430 Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494 RLRSLRKLEE ++K E D L AEK +ID+LL S QW I +IR VK+ F T LGR Sbjct: 431 RLRSLRKLEEMELKREFDALTAEKAEIDALLASEPAQWKAIQAQIRAVKKTFGPETKLGR 490 Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIA 554 RRTT A++E+EPITV++S +GWIR+LK H DLS + FK D+LKIA Sbjct: 491 RRTTLASPPDVGGIDFTAALVEREPITVIVSTKGWIRALKGHVADLSGVAFKGDDTLKIA 550 Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614 TT +ILLL+T+GK +TL A L GRG G+ ++L+ DL+ +IV A Y KL Sbjct: 551 FPTETTQKILLLATNGKVFTLEASKLPGGRGFGDPVRLMADLDDGTEIVAALPYRPETKL 610 Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFS 674 L+ S G F+ ++ANTRKGK L + + ++V GDHVAVV + LLIF Sbjct: 611 LIAGSDGRGFVAPADALVANTRKGKNVLGLDGDATAAVLVPADGDHVAVVNTEKLLLIFP 670 Query: 675 IDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRG 734 + ++ E++RGKGVRLQ + G + D FK+ +GL W D + + + L WLG R Sbjct: 671 VSEVAELARGKGVRLQRCRSGSLLDAHVFKLADGLPWQDGSAEGRLANVSVLEKWLGHRA 730 Query: 735 GVGSLVPKGFPRSGKF 750 VG ++ + FP+ +F Sbjct: 731 EVGLMMARSFPKFERF 746 >gi|240137549|ref|YP_002962020.1| DNA topoisomerase IV subunitA [Methylobacterium extorquens AM1] gi|240007517|gb|ACS38743.1| DNA topoisomerase IV subunitA [Methylobacterium extorquens AM1] Length = 748 Score = 842 bits (2175), Expect = 0.0, Method: Compositional matrix adjust. Identities = 404/736 (54%), Positives = 534/736 (72%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 + +++V L+ ALEERY AYALSTI +RA+PD RDG KPVHRRI++ M + LD +AFKK Sbjct: 11 DGIESVELKTALEERYYAYALSTIMQRALPDARDGLKPVHRRILYGMRLLRLDPTSAFKK 70 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 A+IVG+V+G HPHGDQ++YD+LVRL+Q F QRYPL+ GQGNFGNIDGD AAYRYTEA Sbjct: 71 CAKIVGDVMGDFHPHGDQAIYDALVRLSQDFAQRYPLVDGQGNFGNIDGDGPAAYRYTEA 130 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 R+T+VA L+L G+DED VDFR +YN E EP+V P+ FPNLLANG+ GIAVGMATSIP H Sbjct: 131 RLTEVARLLLDGIDEDTVDFRASYNGEKEEPIVLPAAFPNLLANGSQGIAVGMATSIPPH 190 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 N E+C+AAL LI N E + E+L ++ GPDFPTGGI+++S ESI E+YR GRGGFRVRA Sbjct: 191 NAAELCDAALYLIQNREATSEQLCTFVQGPDFPTGGILIDSAESIREAYRTGRGGFRVRA 250 Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314 RW E++GRG+W IVVTEIPY V K+RLIEK+A+L+ K++PLL D+RDESAEDVR+VL Sbjct: 251 RWAKEDLGRGTWNIVVTEIPYGVPKARLIEKLADLLQEKKLPLLADVRDESAEDVRVVLE 310 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 P++RS+DP +LMES+F LS++E+R PLN+NVL G VP+V+ L L+EW+ HRR VL R Sbjct: 311 PRSRSVDPVMLMESLFRLSELESRIPLNLNVLVGGVVPRVIGLAECLREWVDHRRVVLQR 370 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNL 434 RSS+R+ I+RR+EIL GLLI YL++DE+I IIR ED+PK +++RF LTE Q +AIL+ Sbjct: 371 RSSYRLGQIERRLEILGGLLIVYLDLDEVIRIIREEDEPKAALMARFELTEVQANAILDT 430 Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494 RLRSLRKLEE ++K E + L AEKE I+ LL S K QW +I +IR VK+ F T LGR Sbjct: 431 RLRSLRKLEEMELKREFEALTAEKEGIEGLLASEKLQWTEITKQIRAVKKTFGPETKLGR 490 Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIA 554 RRTT AM+E+EPITV++S +GWIR+LK H DLS + FK D+LK+A Sbjct: 491 RRTTLENPPDTAGIDFTAAMVEREPITVILSEKGWIRALKGHVADLSGVTFKGDDTLKVA 550 Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614 + TT +ILLL+++GK +T+ A L GRG G+ ++L++DL+ +IV A Y KL Sbjct: 551 FLSETTAKILLLASNGKVFTIEASKLPGGRGFGDPVRLMVDLDDGTEIVAALPYKPESKL 610 Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFS 674 LV S G FI ++ANTRKGK L + + L+V GDHVAV ++ +L+F Sbjct: 611 LVGGSDGRGFIAPSDALVANTRKGKAILGLDEGTRAVLLVPAEGDHVAVCSSDKLMLVFP 670 Query: 675 IDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRG 734 ++ E+ RGKGVRLQ + ++D F + EGL W D +G++ + L W+G R Sbjct: 671 ASEVTELGRGKGVRLQRCRQSQLADACVFTLAEGLPWRDGSGQARLANAGMLEKWMGHRS 730 Query: 735 GVGSLVPKGFPRSGKF 750 G+L+ + FP+ +F Sbjct: 731 DAGTLMTRSFPKFERF 746 >gi|218529182|ref|YP_002419998.1| DNA topoisomerase IV subunit A [Methylobacterium chloromethanicum CM4] gi|218521485|gb|ACK82070.1| DNA topoisomerase IV, A subunit [Methylobacterium chloromethanicum CM4] Length = 748 Score = 841 bits (2172), Expect = 0.0, Method: Compositional matrix adjust. Identities = 403/736 (54%), Positives = 534/736 (72%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 + +++V L+ ALEERY AYALSTI +RA+PD RDG KPVHRRI++ M + LD +AFKK Sbjct: 11 DGIESVELKTALEERYYAYALSTIMQRALPDARDGLKPVHRRILYGMRLLRLDPTSAFKK 70 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 A+IVG+V+G HPHGDQ++YD+LVRL+Q F QRYPL+ GQGNFGNIDGD AAYRYTEA Sbjct: 71 CAKIVGDVMGDFHPHGDQAIYDALVRLSQDFAQRYPLVDGQGNFGNIDGDGPAAYRYTEA 130 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 R+T+VA L+L G+DED VDFR +YN E EP+V P+ FPNLLANG+ GIAVGMATSIP H Sbjct: 131 RLTEVARLLLDGIDEDTVDFRASYNGEKEEPIVLPAAFPNLLANGSQGIAVGMATSIPPH 190 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 N E+C+AAL LI N E + E+L ++ GPDFPTGGI+++S ESI E+YR GRGGFRVRA Sbjct: 191 NAAELCDAALYLIQNREATSEQLCTFVQGPDFPTGGILIDSAESIREAYRTGRGGFRVRA 250 Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314 RW E++GRG+W IVVTEIPY V K+RLIEK+A+L+ K++PLL D+RDESAEDVR+VL Sbjct: 251 RWAKEDLGRGTWNIVVTEIPYGVPKARLIEKLADLLQEKKLPLLADVRDESAEDVRVVLE 310 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 P++RS+DP +LMES+F LS++E+R PLN+NVL G VP+V+ L L+EW+ HRR VL R Sbjct: 311 PRSRSVDPVMLMESLFRLSELESRIPLNLNVLVGGVVPRVIGLAECLREWVDHRRVVLQR 370 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNL 434 RSS+R+ I+RR+EIL GLLI YL++DE+I IIR ED+PK +++RF LTE Q +AIL+ Sbjct: 371 RSSYRLGQIERRLEILGGLLIVYLDLDEVIRIIREEDEPKAALMARFELTEVQANAILDT 430 Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494 RLRSLRKLEE ++K E + L AEKE I+ LL S K QW +I +IR VK+ F T LGR Sbjct: 431 RLRSLRKLEEMELKREFEALTAEKEGIEGLLASEKLQWTEITKQIRAVKKTFGPETKLGR 490 Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIA 554 RRTT AM+E+EPITV++S +GWIR+LK H +L+ + FK D+LK+A Sbjct: 491 RRTTLENPPDTAGIDFTAAMVEREPITVILSEKGWIRALKGHVTELAGVAFKGDDTLKVA 550 Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614 + TT +ILLL+++GK +TL A L GRG G+ ++L++DL+ +IV A Y KL Sbjct: 551 FLSETTAKILLLASNGKVFTLEASKLPGGRGFGDPVRLMVDLDDGTEIVAALPYKPESKL 610 Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFS 674 LV S G FI ++ANTRKGK L + + L+V GDHVAV ++ +L+F Sbjct: 611 LVGGSDGRGFIAPSDALVANTRKGKAILGLDEGTRAVLLVPAEGDHVAVCSSDKLMLVFP 670 Query: 675 IDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRG 734 ++ E+ RGKGVRLQ + ++D F + EGL W D +G++ + L W+G R Sbjct: 671 ASEVTELGRGKGVRLQRCRQSQLADACVFTLAEGLPWRDGSGQARLANAGMLEKWMGHRS 730 Query: 735 GVGSLVPKGFPRSGKF 750 G+L+ + FP+ +F Sbjct: 731 DAGTLMTRSFPKFERF 746 >gi|163850485|ref|YP_001638528.1| DNA topoisomerase IV subunit A [Methylobacterium extorquens PA1] gi|163662090|gb|ABY29457.1| DNA topoisomerase IV, A subunit [Methylobacterium extorquens PA1] Length = 748 Score = 840 bits (2169), Expect = 0.0, Method: Compositional matrix adjust. Identities = 402/736 (54%), Positives = 534/736 (72%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 + +++V L+ ALEERY AYALSTI +RA+PD RDG KPVHRRI++ M + LD +AFKK Sbjct: 11 DGIESVELKTALEERYYAYALSTIMQRALPDARDGLKPVHRRILYGMRLLRLDPTSAFKK 70 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 A+IVG+V+G HPHGDQ++YD+LVRL+Q F QRYPL+ GQGNFGNIDGD AAYRYTEA Sbjct: 71 CAKIVGDVMGDFHPHGDQAIYDALVRLSQDFAQRYPLVDGQGNFGNIDGDGPAAYRYTEA 130 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 R+T+VA L+L G+DED VDFR +YN E EP+V P+ FPNLLANG+ GIAVGMATSIP H Sbjct: 131 RLTEVARLLLDGIDEDTVDFRASYNGEKEEPIVLPAAFPNLLANGSQGIAVGMATSIPPH 190 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 N E+C+AAL LI N E + E+L ++ GPDFPTGGI+++S ESI E+YR GRGGFRVRA Sbjct: 191 NAAELCDAALYLIQNREATSEQLCTFVQGPDFPTGGILIDSAESIREAYRTGRGGFRVRA 250 Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314 RW E++GRG+W IVVTEIPY V K+RLIEK+A+L+ K++PLL D+RDESAEDVR+VL Sbjct: 251 RWAKEDLGRGTWNIVVTEIPYGVPKARLIEKLADLLQEKKLPLLADVRDESAEDVRVVLE 310 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 P++RS+DP +LMES+F LS++E+R PLN+NVL G VP+V+ L L+EW+ HRR VL R Sbjct: 311 PRSRSVDPVMLMESLFRLSELESRIPLNLNVLVGGVVPRVIGLTECLREWVDHRRVVLQR 370 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNL 434 RSS+R+ I+RR+EIL GLLI YL++DE+I IIR ED+PK +++RF LTE Q +AIL+ Sbjct: 371 RSSYRLGQIERRLEILGGLLIVYLDLDEVIRIIREEDEPKAALMARFELTEVQANAILDT 430 Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494 RLRSLRKLEE ++K E + L AEKE I+ LL S K QW +I +IR VK+ F T LGR Sbjct: 431 RLRSLRKLEEMELKREFEALTAEKEGIEGLLASEKLQWTEITKQIRAVKKTFGPETKLGR 490 Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIA 554 RRTT AM+E+EPITV++S +GWIR+LK H +L+ + FK D+LK+A Sbjct: 491 RRTTLENPPDTAGIDFTAAMVEREPITVILSEKGWIRALKGHVTELAGVAFKGDDTLKVA 550 Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614 + TT +ILLL+++GK +T+ A L GRG G+ ++L++DL+ +IV A Y KL Sbjct: 551 FLSETTAKILLLASNGKVFTIEASKLPGGRGFGDPVRLMVDLDDGTEIVAALPYKPESKL 610 Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFS 674 LV S G FI ++ANTRKGK L + + L+V GDHVAV ++ +L+F Sbjct: 611 LVGGSDGRGFIAPSDALVANTRKGKAILGLDEGTRAVLLVPAEGDHVAVCSSDKLMLVFP 670 Query: 675 IDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRG 734 ++ E+ RGKGVRLQ + ++D F + EGL W D +G++ + L W+G R Sbjct: 671 ASEVTELGRGKGVRLQRCRQSQLADACVFTLAEGLPWRDGSGQARLANAGMLEKWMGHRS 730 Query: 735 GVGSLVPKGFPRSGKF 750 G+L+ + FP+ +F Sbjct: 731 DAGTLMTRSFPKFERF 746 >gi|6655026|gb|AAF22873.1| topoisomerase II [Bradyrhizobium japonicum] Length = 755 Score = 839 bits (2167), Expect = 0.0, Method: Compositional matrix adjust. Identities = 405/740 (54%), Positives = 533/740 (72%), Gaps = 8/740 (1%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + V LR ALEERYLAYALSTI RA+PD RDG KPVHRRI++ M + LD G AFKKSA Sbjct: 13 IHEVPLREALEERYLAYALSTIMHRALPDARDGLKPVHRRILYGMRLLRLDPGTAFKKSA 72 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLI--SGQGNFGNIDGDSAAAYR-YTE 133 +IVG+V+G HPHGDQ++YD++VRLAQ F RYPL+ GQGNFGNIDGD+ AAY + Sbjct: 73 KIVGDVMGSFHPHGDQAIYDAMVRLAQDFSSRYPLVEVDGQGNFGNIDGDNPAAYPLHRS 132 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 A +T VA L+L+G+DED V+FR Y+ + EP+V P FPNLLANG GIAVGMATSIP Sbjct: 133 AHVTDVARLLLEGIDEDGVEFRPNYDGQSKEPIVLPGGFPNLLANGAQGIAVGMATSIPP 192 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN E+C+AAL LI+ P+ + LL+++ GPDFPTGGI V+S+++I E+Y GRG FRVR Sbjct: 193 HNAAELCDAALHLIEKPDAKSKALLKWVKGPDFPTGGICVDSKQAIAEAYTTGRGSFRVR 252 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313 ARW EE RG+W +VVTEIP+ VQKSRLIEKIAEL K++PL+ D+RDESAEDVRIV+ Sbjct: 253 ARWEQEEGARGTWVVVVTEIPFLVQKSRLIEKIAELQDQKKLPLVGDVRDESAEDVRIVI 312 Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373 PK++++DP L+MES+F L+++E + PLN+NVL GR+P+V+ L L+EWL H R+VL Sbjct: 313 EPKSKNVDPALMMESLFRLTELENKIPLNLNVLIKGRIPKVVGLAECLREWLDHLRDVLI 372 Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILN 433 RRS++R I+ R+E+L G LIAYLNID++I IIR ED+PKP ++ F LTE Q +AILN Sbjct: 373 RRSNYRKAQIEHRLEVLGGFLIAYLNIDKVIKIIRTEDEPKPALMKAFKLTEVQAEAILN 432 Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493 +RLRSLRKLEE +I++E NL E + I+++L S +QW ++ ++ +V+++F T LG Sbjct: 433 MRLRSLRKLEEMEIRTEDKNLRNELKGINAVLASEAEQWKKVGEQVGKVRDMFGPKTPLG 492 Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKI 553 +RRTTF + D A +++A +E+EP+TVV+S++GWIR++K H DLS L FK+ D L Sbjct: 493 KRRTTFADAPEHDLAAIEEAFVEREPVTVVVSDKGWIRTMKGHVEDLSGLAFKQDDRLGF 552 Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613 A A TT ++LL +T+GK Y+L L GRGHGE I+L IDL V FV K Sbjct: 553 AFFAETTSKLLLFATNGKFYSLDVAKLPGGRGHGEPIRLFIDLEQEAAPVALFVNKGGRK 612 Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENR---KL 670 LV S +G F+V E + + T+KGK L V + + V +V GD VA G R K+ Sbjct: 613 FLVASHEGQGFVVNEDDCVGTTKKGKQVLNVDMPNEARTVTEVVGDTVA--GHRRETAKM 670 Query: 671 LIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWL 730 L+F +DQIPEM+RG+GVRLQ YKDGG+SDV+ F GLTW DSAGR ++ + +L W Sbjct: 671 LVFPLDQIPEMARGRGVRLQKYKDGGLSDVVVFDAKAGLTWKDSAGREFSATMKELAEWQ 730 Query: 731 GKRGGVGSLVPKGFPRSGKF 750 G R G L PKGFP+S KF Sbjct: 731 GTRADAGRLPPKGFPKSNKF 750 >gi|254560021|ref|YP_003067116.1| DNA topoisomerase IV subunitA [Methylobacterium extorquens DM4] gi|254267299|emb|CAX23131.1| DNA topoisomerase IV subunitA [Methylobacterium extorquens DM4] Length = 748 Score = 838 bits (2165), Expect = 0.0, Method: Compositional matrix adjust. Identities = 401/736 (54%), Positives = 534/736 (72%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 + +++V L+ ALEERY AYALSTI +RA+PD RDG KPVHRRI++ M + LD +AFKK Sbjct: 11 DGIESVELKTALEERYYAYALSTIMQRALPDARDGLKPVHRRILYGMRLLRLDPTSAFKK 70 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 A+IVG+V+G HPHGDQ++YD+LVRL+Q F QRYPL+ GQGNFGNIDGD AAYRYTEA Sbjct: 71 CAKIVGDVMGDFHPHGDQAIYDALVRLSQDFAQRYPLVDGQGNFGNIDGDGPAAYRYTEA 130 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 R+T+VA L+L G+DED VDFR +YN E EP+V P+ FPNLLANG+ GIAVGMATSIP H Sbjct: 131 RLTEVARLLLDGIDEDTVDFRASYNGEKEEPIVLPAAFPNLLANGSQGIAVGMATSIPPH 190 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 N E+C+AAL LI N E + E+L ++ GPDFPTGGI+++S ESI E+YR GRGGFRVRA Sbjct: 191 NAAELCDAALYLIQNREATSEQLCTFVQGPDFPTGGILIDSAESIREAYRTGRGGFRVRA 250 Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314 RW E++GRG+W IVVTEIPY V K+RLIEK+A+L+ K++PLL D+RDESAEDVR+VL Sbjct: 251 RWAKEDLGRGTWNIVVTEIPYGVPKARLIEKLADLLQEKKLPLLADVRDESAEDVRVVLE 310 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 P++RS+DP +LMES+F LS++E+R PLN+NVL G VP+V+ L L+EW+ HRR VL R Sbjct: 311 PRSRSVDPVMLMESLFRLSELESRIPLNLNVLVGGVVPRVIGLAECLREWVDHRRVVLQR 370 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNL 434 RSS+R+ I+RR+EIL GLLI YL++DE+I IIR ED+PK +++RF LTE Q +AIL+ Sbjct: 371 RSSYRLGQIERRLEILGGLLIVYLDLDEVIRIIREEDEPKAALMARFELTEVQANAILDT 430 Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494 RLRSLRKLEE ++K E + L AEKE I+ LL S K QW +I +IR VK+ F T LG+ Sbjct: 431 RLRSLRKLEEMELKREFEALTAEKEGIEGLLASEKLQWTEITKQIRAVKKTFGPETKLGK 490 Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIA 554 RRTT AM+E+EPITV++S +GWIR+LK H +L+ + FK D+LK+A Sbjct: 491 RRTTLENPPDTAGIDFTAAMVEREPITVILSEKGWIRALKGHVTELAGVAFKGDDTLKVA 550 Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614 + TT +ILLL+++GK +T+ A L GRG G+ ++L++DL+ +IV A Y KL Sbjct: 551 FLSETTAKILLLASNGKVFTIEASKLPGGRGFGDPVRLMVDLDDGTEIVAALPYKPESKL 610 Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFS 674 LV S G FI ++ANTRKGK L + + L+V GDHVAV ++ +L+F Sbjct: 611 LVGGSDGRGFIAPSDALVANTRKGKAILGLDEGTRAVLLVPAEGDHVAVCSSDKLMLVFP 670 Query: 675 IDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRG 734 ++ E+ RGKGVRLQ + ++D F + EGL W D +G++ + L W+G R Sbjct: 671 ASEVTELGRGKGVRLQRCRQSQLADACVFTLAEGLPWRDGSGQARLANAGMLEKWMGHRS 730 Query: 735 GVGSLVPKGFPRSGKF 750 G+L+ + FP+ +F Sbjct: 731 DAGTLMTRSFPKFERF 746 >gi|296535957|ref|ZP_06898105.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Roseomonas cervicalis ATCC 49957] gi|296263705|gb|EFH10182.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Roseomonas cervicalis ATCC 49957] Length = 745 Score = 832 bits (2148), Expect = 0.0, Method: Compositional matrix adjust. Identities = 398/734 (54%), Positives = 534/734 (72%), Gaps = 4/734 (0%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 V+ L AL ERYLAYA+STI R++PD+RDG KPVHRR++ AM ++ LD A FKK A Sbjct: 14 VRPTHLADALSERYLAYAMSTITARSLPDVRDGLKPVHRRLLWAMHQLRLDPAAGFKKCA 73 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 RIVG+V+GK HPHGD ++YD++VRLAQ F RYPL+ GQGNFGNIDGD+AAA RYTEAR+ Sbjct: 74 RIVGDVMGKYHPHGDAAIYDAMVRLAQEFAARYPLVEGQGNFGNIDGDNAAAMRYTEARL 133 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 T++A+ +L+G++E+AVDFR TY+ E+ EP+V P+ FPNLLANG +GIAVGMATSIP HN Sbjct: 134 TEIAKAMLEGIEENAVDFRATYDGEEQEPIVLPAAFPNLLANGAAGIAVGMATSIPPHNA 193 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+C AAL LIDNP+ +++LL + GPDFPTGG++VES E+I E+Y GRGGFR+RARW Sbjct: 194 GELCAAALVLIDNPKAELDELLAVMPGPDFPTGGVLVESPEAIREAYATGRGGFRIRARW 253 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316 E++ G+W I+VTEIPYQV KSRLIE+IA+L+ K++PLL D+RDES + VRIVL PK Sbjct: 254 AEEKLKNGAWQIIVTEIPYQVAKSRLIEQIAQLMEEKKLPLLADVRDESTDVVRIVLEPK 313 Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376 +R+++P +LME++F + +E RFPLNMNVL R P+VM L +L+ WL HR VL RRS Sbjct: 314 SRTVEPAVLMETLFRATSLEARFPLNMNVLDASRTPRVMGLREVLRCWLDHRHVVLVRRS 373 Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRL 436 R+ AI RR+EIL+G LI YLN+DE+I IIR ED PKP +++RF+LTE Q +AILN+RL Sbjct: 374 EHRLAAIARRLEILEGYLIVYLNLDEVIRIIREEDHPKPALMARFALTETQAEAILNMRL 433 Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496 RSLRKLEE +I+ E L AE++ + +LL S ++W +IA EI + F + T+LGRRR Sbjct: 434 RSLRKLEEMEIRKEHKKLSAEQKSLQALLGSEGKRWKRIAEEIAATRARFGEETELGRRR 493 Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALH 556 +T + + A ++A +E+E ITV++S +GWIR++K H + FKEGD L+ ALH Sbjct: 494 STL-DAAPAAVVIDERAFVEREMITVILSEKGWIRAVKGHLPPETEHKFKEGDRLRAALH 552 Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLV 616 A TTDRI L +T+GK +TL A + GRG G+ ++L++DL + ++V+ FV+ K LV Sbjct: 553 AETTDRICLFATNGKCFTLKADAIPRGRGDGQPVRLMVDLTNEDEVVSLFVWRPERKFLV 612 Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSID 676 +S G F+V+ ++ A R GK L V S + ++ GD VA++GENRKLL+F ++ Sbjct: 613 AASDGRGFVVKSEDLTAEKRTGKQVLLVDSPVEAARLIPAEGDTVAIIGENRKLLVFPLE 672 Query: 677 QIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGV 736 Q+PEM RG+GV LQ YKDGG++DV F EGLTW G R E DL W G R G Sbjct: 673 QVPEMVRGRGVTLQGYKDGGMADVKVFSAREGLTW--KIGERV-RMETDLTTWRGNRAGA 729 Query: 737 GSLVPKGFPRSGKF 750 G P GFP++ +F Sbjct: 730 GRQPPNGFPKTNRF 743 >gi|188580257|ref|YP_001923702.1| DNA topoisomerase IV subunit A [Methylobacterium populi BJ001] gi|179343755|gb|ACB79167.1| DNA topoisomerase IV, A subunit [Methylobacterium populi BJ001] Length = 748 Score = 830 bits (2145), Expect = 0.0, Method: Compositional matrix adjust. Identities = 399/736 (54%), Positives = 531/736 (72%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 + +++V L+ ALEERY AYALSTI +RA+PD RDG KPVHRRI++ M + LD +AFKK Sbjct: 11 DGIESVELKTALEERYYAYALSTIMQRALPDARDGLKPVHRRILYGMRLLRLDPTSAFKK 70 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 A+IVG+V+G HPHGDQ++YD+LVRL+Q F QRYPL+ GQGNFGNIDGD AAYRYTEA Sbjct: 71 CAKIVGDVMGDFHPHGDQAIYDALVRLSQDFAQRYPLVDGQGNFGNIDGDGPAAYRYTEA 130 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 R+T+VA L+L G+DED VDFR +YN E EPVV P+ FPNLLANG+ GIAVGMATSIP H Sbjct: 131 RLTEVARLLLDGIDEDTVDFRPSYNGEKEEPVVLPAAFPNLLANGSQGIAVGMATSIPPH 190 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 N E+C+AAL LI N E + E+L ++ GPDFPTGGI+++S + I E+YR GRGGFRVRA Sbjct: 191 NAAELCDAALYLIQNREATSEQLCTFVQGPDFPTGGILIDSPDVIREAYRTGRGGFRVRA 250 Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314 RW E++GRG+W IVVTEIPY V K+RLIEK+A+L+ K++PLL D+RDESAEDVR+VL Sbjct: 251 RWAKEDLGRGTWNIVVTEIPYGVPKARLIEKLADLLQEKKLPLLADVRDESAEDVRVVLE 310 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 P++RS+DP LLMES+F LS++E R PLN+NVL G VP+V+ L L+EW+ HRR VL R Sbjct: 311 PRSRSVDPVLLMESLFRLSELEARVPLNLNVLVGGVVPRVIGLAECLREWVDHRRVVLQR 370 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNL 434 RSS+R+ I+RR+EIL GLLI YL++DE+I IIR ED+PK +++RF LTE Q +AIL+ Sbjct: 371 RSSYRLGQIERRLEILGGLLIVYLDLDEVIRIIREEDEPKAALMARFELTEVQANAILDT 430 Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494 RLRSLRKLEE ++K E + L EKE I++LL S K QW +I +IR VK+ F T LG+ Sbjct: 431 RLRSLRKLEEMELKREFEALTQEKEGIEALLGSEKLQWTEITKQIRAVKKTFGPETKLGK 490 Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIA 554 RRTT AM+E+EPITV++S +GWIR+LK H DLS + FK D+LK++ Sbjct: 491 RRTTLENPPDTAGIDFTAAMVEREPITVILSEKGWIRALKGHVADLSGVTFKGDDTLKVS 550 Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614 + TT +ILLL+++GK +T+ A L GRG G+ ++L++DL+ +IV A Y KL Sbjct: 551 FLSETTAKILLLASNGKVFTIEASKLPGGRGFGDPVRLMVDLDDGTEIVAALPYKPESKL 610 Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFS 674 LV S G FI ++ANTRKGK L + L+V GDH+AV ++ +L+F Sbjct: 611 LVAGSDGRGFIAPSDALVANTRKGKAILGLDEGTSATLLVPAEGDHIAVCSSDKLMLVFP 670 Query: 675 IDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRG 734 ++ E+SRGKGVRLQ + ++D F + +GL W D +G++ L ++G R Sbjct: 671 ASEVTELSRGKGVRLQRCRQSRLTDACVFTLADGLPWRDGSGQARLYQVAMLEKFMGHRS 730 Query: 735 GVGSLVPKGFPRSGKF 750 G+L+ + FP+ +F Sbjct: 731 DAGALMTRSFPKFERF 746 >gi|163793045|ref|ZP_02187021.1| Type IIA topoisomerase, A subunit [alpha proteobacterium BAL199] gi|159181691|gb|EDP66203.1| Type IIA topoisomerase, A subunit [alpha proteobacterium BAL199] Length = 744 Score = 827 bits (2136), Expect = 0.0, Method: Compositional matrix adjust. Identities = 401/727 (55%), Positives = 531/727 (73%), Gaps = 4/727 (0%) Query: 25 ALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIG 84 AL +RYLAYALSTI R++PD+RDG KPVHRR++ AM ++ LD G+ FKKSAR+VG+V+G Sbjct: 20 ALSQRYLAYALSTIMSRSLPDVRDGLKPVHRRLLFAMRQLRLDPGSGFKKSARVVGDVMG 79 Query: 85 KLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELIL 144 K HPHGD S+YD+LVRLAQ F RYPL+ GQGNFGNIDGD+AAA RYTEAR+T+VA L+L Sbjct: 80 KFHPHGDSSIYDALVRLAQDFAVRYPLVDGQGNFGNIDGDNAAAMRYTEARLTEVAALLL 139 Query: 145 QGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAAL 204 G+DED VDFR TY+ E EPVV PS FPNLLANG GIAVGMATSIP HNV E+C A Sbjct: 140 DGIDEDTVDFRQTYDGEGEEPVVLPSAFPNLLANGAQGIAVGMATSIPPHNVDELCTALQ 199 Query: 205 ALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRG 264 LI +PE E L+E + GPD PTGG++VE+RES++E+YR GRG FRVRA+W VE + G Sbjct: 200 HLIKHPEARDETLVEMVPGPDLPTGGVLVEARESVLEAYRTGRGSFRVRAKWEVEPLKNG 259 Query: 265 SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDL 324 +W IVVTEIPYQVQKSRL+E++AEL+ +++ LL+DIRDESA D+R+VL PK+R++DPD+ Sbjct: 260 TWQIVVTEIPYQVQKSRLVERMAELLQNRKLTLLDDIRDESAMDIRLVLEPKSRNVDPDV 319 Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384 LMES+F +D+E+R LN+NVL VP+VM L L+ +L HR++VL RR+ R++ I Sbjct: 320 LMESLFRQTDLESRISLNLNVLDKDNVPRVMSLREALQAFLDHRQDVLVRRTRHRLEKIA 379 Query: 385 RRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEE 444 R+E+L G LIAYLN+DEII I+R ED+PK VM+ F L++ Q +AILN+RLR+LR+LEE Sbjct: 380 HRLEVLGGYLIAYLNLDEIIRIVREEDEPKAVMMRTFELSDVQAEAILNMRLRALRRLEE 439 Query: 445 YQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSR 504 +I+ E +NL AE++ + +LLN +QW ++ ++ E++ F K+T++GRRRT Sbjct: 440 IEIRKEFENLSAERDDLTALLNDDARQWRAVSDQLGEIRRGFGKTTEIGRRRTVIGSTPN 499 Query: 505 ADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRIL 564 +A++E+EPITV+ S +GWIR+LK H + +KEGD + LHA TTD+IL Sbjct: 500 P-VVVPTEALVEREPITVICSEKGWIRALKGHIGLDQEVKYKEGDGERFRLHAETTDKIL 558 Query: 565 LLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAF 624 + +TDG+ YT+ L SGRGHGE ++L+IDL +++D+V Y + +LLV SS+G F Sbjct: 559 VFATDGRFYTIGGDKLPSGRGHGEPLRLMIDLANDEDVVAIRPYRTGDRLLVASSEGRGF 618 Query: 625 IVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRG 684 +V +++A TR GK L V S + + V V GD VAVVG NRKLL+F IPEM RG Sbjct: 619 VVPVDDVVAQTRAGKQVLVVDSGARANICVTVAGDTVAVVGTNRKLLVFDAADIPEMVRG 678 Query: 685 KGVRLQSYKDGG-ISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKG 743 KGV LQ YK GG ++D + FK +GL+W+ GR R+E DL W GKR G G P G Sbjct: 679 KGVILQKYKPGGHLADAVVFKAEDGLSWVLQGGR--RRTEPDLGVWRGKRAGAGKNPPTG 736 Query: 744 FPRSGKF 750 FPR +F Sbjct: 737 FPRPPRF 743 >gi|254462505|ref|ZP_05075921.1| DNA topoisomerase IV, A subunit [Rhodobacterales bacterium HTCC2083] gi|206679094|gb|EDZ43581.1| DNA topoisomerase IV, A subunit [Rhodobacteraceae bacterium HTCC2083] Length = 767 Score = 826 bits (2133), Expect = 0.0, Method: Compositional matrix adjust. Identities = 409/770 (53%), Positives = 544/770 (70%), Gaps = 29/770 (3%) Query: 6 ISNSNTLVEENVKAVS--LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63 +S+ T NV +S LR AL +RYL YALSTI RA+PD RDG KPVHRRI++AM E Sbjct: 1 MSDDTTDENLNVPDLSEPLRRALGDRYLTYALSTIMHRALPDARDGLKPVHRRILYAMRE 60 Query: 64 MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123 + L F+KSA+I G+V+G HPHGD ++YD++ RLAQ F RYPL+ GQGNFGNIDG Sbjct: 61 LKLSATGGFRKSAKISGDVMGNYHPHGDAAIYDAMARLAQDFNVRYPLVDGQGNFGNIDG 120 Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183 D+ AA RYTEARMT AE +L+G+ E+AVDFR+ Y+ +EPVV P+ FPNLLANG+SGI Sbjct: 121 DNPAAARYTEARMTLAAEALLEGLAENAVDFRENYDGTLTEPVVLPASFPNLLANGSSGI 180 Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243 AVGMAT+IP HN+ E+CEA L LI P+ + LL ++ GPDFPTGG IVE +E+I E+Y Sbjct: 181 AVGMATNIPPHNIAELCEACLHLIKTPDARDDTLLNFVPGPDFPTGGTIVEPKENIAEAY 240 Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303 R GRG FR+R ++ VE++GRG W IVVTEIPYQVQKS+LIEKIA+LI K+IP+L DIRD Sbjct: 241 RTGRGSFRLRCKYEVEDLGRGQWQIVVTEIPYQVQKSKLIEKIADLIQTKKIPILGDIRD 300 Query: 304 ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363 ESAEDVRIVL P++++++PD+LM ++ SD+E RF LNMNVL G P+V + +L+ Sbjct: 301 ESAEDVRIVLEPRSKNVEPDILMSMLYRSSDLEVRFSLNMNVLIDGLTPKVCSMKEVLRA 360 Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV----- 418 +L HRR+VL RRS+ RM+ ID R+E+L+GL+IA+LN+D +I IIR +D PK ++ Sbjct: 361 FLDHRRDVLIRRSTHRMEKIDHRLEVLEGLIIAFLNLDRVIDIIRYDDDPKAALMREDWG 420 Query: 419 -----------------SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKI 461 LTE Q +AILN+RLRSLR+LEE ++K E D L+ E+ + Sbjct: 421 RTFTRAMSEADYVGPPTGEGELTEVQAEAILNMRLRSLRRLEEMELKRERDALMEERAGL 480 Query: 462 DSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPIT 521 D LLNS + QW+ IA +IRE K+ F K G RR+ F E ++ L +AMI++EPIT Sbjct: 481 DDLLNSVELQWSSIADQIRETKKQFGKDHPAGARRSQFAEAGEVEEVPL-EAMIDREPIT 539 Query: 522 VVISNRGWIRSLKSHSVDLS-ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL 580 VV S GWIR++ H +DL+ L FK+GD + HA TTDR+L ++G+ YT+ A NL Sbjct: 540 VVCSEMGWIRAMTGH-IDLTRELKFKDGDGPRFIFHAETTDRLLAFGSNGRFYTVSAANL 598 Query: 581 LSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKT 640 GRG GE ++L++DL + +V F++ S KLLV SS G+ F+V E +++A TR GK Sbjct: 599 PGGRGMGEPLRLIVDLPNEAGLVDLFIHKSGRKLLVASSAGDGFVVPEDDVVAQTRSGKQ 658 Query: 641 FLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDV 700 L V + + + VTGD VAVVGENRK+L+F +D++PEM RGKGVRLQ YKDGG+SDV Sbjct: 659 VLNVRGDNRALVCKPVTGDSVAVVGENRKVLVFPLDELPEMGRGKGVRLQKYKDGGMSDV 718 Query: 701 ICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750 F + +GL+W+D AGR+ R+E +L W GKR G G + P+GFPR +F Sbjct: 719 ATFTMADGLSWLDPAGRT--RTEVELAEWTGKRAGSGRMAPRGFPRDNRF 766 >gi|119385273|ref|YP_916329.1| DNA topoisomerase IV subunit A [Paracoccus denitrificans PD1222] gi|119375040|gb|ABL70633.1| DNA topoisomerase IV subunit A [Paracoccus denitrificans PD1222] Length = 747 Score = 825 bits (2132), Expect = 0.0, Method: Compositional matrix adjust. Identities = 391/737 (53%), Positives = 534/737 (72%), Gaps = 7/737 (0%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 ++ + L A+ ERYL YALSTI RA+PD RDG KPVHRRI+ AM E+ L AF+ Sbjct: 17 QDQTTSEPLSRAIGERYLTYALSTIMNRALPDARDGLKPVHRRILFAMRELRLSPTGAFR 76 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSA+I G+V+G HPHGD ++YD++ RLAQPF RYPL+ GQGNFGNIDGD+ AA RYTE Sbjct: 77 KSAKISGDVMGNYHPHGDAAIYDAMARLAQPFAMRYPLVDGQGNFGNIDGDNPAASRYTE 136 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 AR+T AE +++G+ E+AVDFR Y+ EP+V P+ FPNLL NG SGIAVGMAT++P Sbjct: 137 ARLTAAAEALMEGLAENAVDFRPNYDGTLEEPIVLPAAFPNLLCNGASGIAVGMATNVPP 196 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E+ +A L LI P+ + L+ + GPDFPTGG++VESRE+I E+YR GRG R+R Sbjct: 197 HNLHEVIDACLHLIKAPDARDDTLVSIVPGPDFPTGGVLVESRETIAEAYRTGRGSLRLR 256 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313 ARW VE++GRG W IVVTEIPYQVQKS+LIE++AE+I K++P+L D+RDESAED+RIVL Sbjct: 257 ARWSVEDLGRGQWQIVVTEIPYQVQKSKLIERLAEVIQLKKVPILADVRDESAEDIRIVL 316 Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373 P+ R++D + LM ++F +SD+E RF LNMNVL GRVP+V L +L+ +L HRREVL Sbjct: 317 EPRTRAVDAEQLMAALFRVSDLEVRFGLNMNVLIDGRVPKVCSLKEVLRAFLDHRREVLV 376 Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILN 433 RRS+ R+ I R+E+L+G +IA+LN+D +I IIR+ED PK VM++ F L++ QV+AILN Sbjct: 377 RRSNHRLDKIAARLEVLEGYMIAFLNLDRVIEIIRHEDDPKAVMIAEFKLSDVQVEAILN 436 Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493 +RLR+LR+LEE ++++E +NL E+E + ++L QW +IA E+RE + F KS G Sbjct: 437 MRLRALRRLEEIELRAEHENLTREREGLAAMLADEGAQWARIAEELRETRAKFGKSASGG 496 Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKI 553 +RRT E + + AMIE+EPITV++S GWIR++K H + + FK+GD + Sbjct: 497 QRRTEIGEAGEVAEIDM-DAMIEREPITVILSKMGWIRAMKGHQPLDAEVKFKDGDGPFM 555 Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613 ALHA TTD++++ + +G+ YTLPA NL GRG GE ++L+IDL ++ ++ F + + Sbjct: 556 ALHAETTDKLMVFAANGRFYTLPANNLPGGRGMGEPLRLMIDLPNDAAVIDMFPWRDGER 615 Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIF 673 LV S G+ F+V ++I+A TR GK L + L +VTGDHVAVVG+NRKLL+F Sbjct: 616 YLVASKAGDGFVVAGADILAQTRAGKQVLNGEA----ALCRRVTGDHVAVVGQNRKLLVF 671 Query: 674 SIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKR 733 + ++PEM+RGKGVRLQ YKDGG+SD +C + EGL W ++ GR+ RSE DL WLGKR Sbjct: 672 PLSELPEMARGKGVRLQKYKDGGLSDAVCITLAEGLRWQETGGRT--RSEPDLTEWLGKR 729 Query: 734 GGVGSLVPKGFPRSGKF 750 G G + P+GFPR +F Sbjct: 730 AGAGYMAPRGFPRDNRF 746 >gi|114771233|ref|ZP_01448653.1| DNA topoisomerase IV subunit A [alpha proteobacterium HTCC2255] gi|114548158|gb|EAU51045.1| DNA topoisomerase IV subunit A [alpha proteobacterium HTCC2255] Length = 748 Score = 825 bits (2132), Expect = 0.0, Method: Compositional matrix adjust. Identities = 390/730 (53%), Positives = 539/730 (73%), Gaps = 5/730 (0%) Query: 22 LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81 LR A+ +RYL YALSTI RA+PD RDG KPVHRRI++AM + L F KSA+I G+ Sbjct: 22 LRRAIGDRYLTYALSTIMHRALPDARDGLKPVHRRILYAMYRLKLVSNGKFLKSAKISGD 81 Query: 82 VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE 141 +G HPHGD ++YD++ RLAQ F RYP++ GQGNFGNIDGD+ AA RYTEARMT VAE Sbjct: 82 TMGDFHPHGDAAIYDAMARLAQDFSVRYPMVDGQGNFGNIDGDNPAAARYTEARMTAVAE 141 Query: 142 LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICE 201 +L G++E+AVDF+D Y+ +EP V P+ FPNLLANG++GIAVGMAT+IP HN+ E+ + Sbjct: 142 AMLIGMEENAVDFQDNYDGRLTEPSVLPASFPNLLANGSTGIAVGMATNIPPHNIGELLD 201 Query: 202 AALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEV 261 A++ LI P E LL+++ GPDFPTGGI+VE R+S++E+YR GRG R+R++W +E++ Sbjct: 202 ASIHLIKAPNARDETLLDFVPGPDFPTGGILVEPRDSLLETYRTGRGPMRLRSKWEIEDL 261 Query: 262 GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLD 321 RG W IVVTEIPYQVQKS+LIEKIAELI K++P+L D+RDESAED+R+VL P+ +++D Sbjct: 262 PRGLWQIVVTEIPYQVQKSKLIEKIAELIQLKKLPILADVRDESAEDIRLVLEPRAKTVD 321 Query: 322 PDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQ 381 P +LME++F +SD+E RF LN+N L GR P+V + +L+ ++ H+R+VL RRS RM Sbjct: 322 PTVLMETLFRMSDLEVRFNLNLNTLIDGRTPKVCSMKEVLRAFIDHKRDVLLRRSKHRMD 381 Query: 382 AIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRK 441 ID R+E+L+G ++A+LN+D +I IIRNED+PK +M+ FSL++ QV+AILN+RLRSLRK Sbjct: 382 KIDHRLEVLEGYIVAFLNLDRVIEIIRNEDEPKKIMMKEFSLSDVQVEAILNMRLRSLRK 441 Query: 442 LEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCE 501 LEE ++++ELD+L E+ +D LL S K QW +I E+RE +++F K++D G RRT E Sbjct: 442 LEEIELRTELDSLQLERADLDDLLASEKMQWERIINELRETRKVFGKNSDSGNRRTELAE 501 Query: 502 VSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA-LHFKEGDSLKIALHAHTT 560 ++ + +AMIEKEPITVV S+ GW+R++K H VDLS L +K+GD + HA TT Sbjct: 502 APDFEEVPI-EAMIEKEPITVVCSSMGWLRAMKGH-VDLSQELKYKDGDEKRFVFHAETT 559 Query: 561 DRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSK 620 D++L+ +G+ YT+ L GRG GE I+L++DL ++ ++V F++ KLL+ SS Sbjct: 560 DKLLMFGGNGRFYTMSCSELPGGRGMGEPIRLIVDLPNDANMVDLFIHQPDRKLLLASSA 619 Query: 621 GNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPE 680 G+ F+VEE++I+A TR GK L V + + V GD+VA VG+NRK+LIF ID++P Sbjct: 620 GDGFVVEENDIVAQTRTGKQALNVKGDITALICKPVVGDYVATVGQNRKVLIFPIDELPV 679 Query: 681 MSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740 MSRGKGVR+Q YKDGG++D F +GL+W+D AGR R E +L W+GKR G G + Sbjct: 680 MSRGKGVRMQKYKDGGLNDATTFHFIDGLSWLDPAGR--RRIETELADWIGKRAGAGRMA 737 Query: 741 PKGFPRSGKF 750 P+GFPR KF Sbjct: 738 PRGFPRENKF 747 >gi|144899858|emb|CAM76722.1| Gram negative topoisomerase IV, subunit A [Magnetospirillum gryphiswaldense MSR-1] Length = 741 Score = 824 bits (2128), Expect = 0.0, Method: Compositional matrix adjust. Identities = 396/739 (53%), Positives = 539/739 (72%), Gaps = 5/739 (0%) Query: 13 VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72 V +++ SL AL ERYLAYA+STI R++PD+RDG KPVHRR++ AM ++ LD F Sbjct: 6 VSGDIRDTSLSEALGERYLAYAMSTIVSRSLPDVRDGLKPVHRRLLFAMRQLKLDPEGGF 65 Query: 73 KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132 KK AR+VG+VIGK HPHGD SVYD++VRLAQ F RYPL+ GQGNFGNIDGD+AAA RYT Sbjct: 66 KKCARVVGDVIGKYHPHGDMSVYDAMVRLAQDFAVRYPLVEGQGNFGNIDGDNAAAMRYT 125 Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192 EA++T VA +++ +D+D VDFR TY+ + EPVV P+ FPNLLANG +GIAVGMAT+IP Sbjct: 126 EAKLTAVAAALMENLDDDTVDFRPTYDGSEEEPVVMPAAFPNLLANGAAGIAVGMATNIP 185 Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252 HNV EIC A LI P+ ++ L+ ++ GPDFPTGG++VES+ SI E+YR GRG FR+ Sbjct: 186 PHNVGEICNALTHLIAAPDCPVDDLVRHMPGPDFPTGGVLVESQASIHEAYRSGRGSFRL 245 Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312 RA+W VE++ G + I+VTEIPYQVQKS++IEKIAEL+ K++PLL DIRDESAEDVR+V Sbjct: 246 RAKWEVEKLSHGLYQIIVTEIPYQVQKSKVIEKIAELLNEKKLPLLADIRDESAEDVRVV 305 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 L P+NR+++ ++LME +F +D+E R LNMNVL VP VM L +L+ +L HR EVL Sbjct: 306 LEPRNRTVEAEMLMEQLFRQTDLEVRVSLNMNVLDRDAVPSVMNLKQVLQAFLDHRMEVL 365 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAIL 432 RRS FR+ I+RR+E+L+G L+AYLN+DE+I IIR ED+PK VM+ F LTE Q +AIL Sbjct: 366 ERRSRFRLDKIERRLEVLEGYLVAYLNLDEVIRIIREEDEPKAVMMRTFGLTEVQTEAIL 425 Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492 N+RLRSLRKLEE++I+ E D L AEK +++LL ++W+ IA ++ ++ F T L Sbjct: 426 NMRLRSLRKLEEFEIRKEHDQLSAEKSDLEALLADESRRWSTIAAQVAATRKAFGPGTPL 485 Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLK 552 G RRT + A + +A +E+EPIT+++S +GWIR++K H L + FKEGD LK Sbjct: 486 GDRRTQLADAPSAVVVPI-EAFVEREPITLLLSEKGWIRAMKGHVDQLDGVKFKEGDQLK 544 Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612 +AL A TTD++L+ ++DG+ YT+ L SGRG GE ++L+ID+ ++ +++ F + Sbjct: 545 LALKAETTDKLLVFTSDGRFYTIGGDKLPSGRGFGEPLRLMIDMANDAEVLCVFAHKPGR 604 Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE-EKMKLVVKVTGDHVAVVGENRKLL 671 KLL+ SS G FIVEE+E++A T+ GK L + E EK + GD VA++G+NRKLL Sbjct: 605 KLLLSSSGGRGFIVEEAEVLAQTKAGKMVLNLGDEGEKAAFCLPAEGDAVAIIGDNRKLL 664 Query: 672 IFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLG 731 +F ++IP M+RG+GV LQ Y+DGG++D+ F + +GL+W S R+ R+E DL WLG Sbjct: 665 VFMAEEIPVMARGRGVLLQKYRDGGVADIKVFTLADGLSW-KSGERT--RTEQDLTPWLG 721 Query: 732 KRGGVGSLVPKGFPRSGKF 750 KR VG L P GFPR+ KF Sbjct: 722 KRASVGRLPPTGFPRANKF 740 >gi|83593183|ref|YP_426935.1| DNA topoisomerase IV subunit A [Rhodospirillum rubrum ATCC 11170] gi|83576097|gb|ABC22648.1| DNA topoisomerase IV subunit A [Rhodospirillum rubrum ATCC 11170] Length = 743 Score = 824 bits (2128), Expect = 0.0, Method: Compositional matrix adjust. Identities = 399/736 (54%), Positives = 540/736 (73%), Gaps = 8/736 (1%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 ++ L AL ERYLAYALSTI R++PD+RDG KPVHRR+++AM + LD G+ FKK A Sbjct: 12 IRETPLSEALSERYLAYALSTIVSRSLPDVRDGLKPVHRRLLYAMRMLKLDPGSGFKKCA 71 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD +VY+++VRLAQ F RYPL+ GQGNFGNIDGD+AAA RYTEAR+ Sbjct: 72 RVVGDVIGKYHPHGDAAVYEAMVRLAQEFAVRYPLVEGQGNFGNIDGDNAAAMRYTEARL 131 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 T VA +++G+D+DAVDFR TY+ ED EPVV P+ FPNLLANG+SGIAVGMAT+IP HNV Sbjct: 132 TAVASALMEGLDDDAVDFRPTYDGEDHEPVVMPAAFPNLLANGSSGIAVGMATNIPPHNV 191 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+CEA L LI P E LL ++ GPDFPTGG++ E ++I E+YR GRG R+RARW Sbjct: 192 GELCEALLHLIKVPACPPEALLSFVKGPDFPTGGVLAEHPQAIAEAYRTGRGAMRLRARW 251 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316 E + G + IV+TEIPYQ+QK++L+E+IAELI +++P+L D+RDESA+D+R+VL P+ Sbjct: 252 EKENLSHGLYQIVITEIPYQIQKAKLVERIAELINGRKLPILADVRDESADDLRLVLEPR 311 Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376 NR++D + LME +F L+D+E RF LNMNVL VP+V+ L L +L HR VL RRS Sbjct: 312 NRTVDAETLMEQLFRLTDLEIRFNLNMNVLDGDGVPKVLGLKEALVAFLDHRLVVLGRRS 371 Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRL 436 R+ I+ R+E+L G LIAYLN+DE+I IIR ED+PKP +++ F L++ Q +AILN+RL Sbjct: 372 RHRLGKIEHRLEVLAGTLIAYLNLDEVIRIIREEDEPKPALMAAFGLSDVQTEAILNMRL 431 Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496 RSLR+LEE +I+ E D L AEK +++LL W IA +IRE ++ F T LGRRR Sbjct: 432 RSLRRLEEMEIRREHDALSAEKAGLEALLADEGLCWKVIAKQIRETRKTFGGDTALGRRR 491 Query: 497 TTFCEVSRADKATLQ--QAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIA 554 T E+ A A + +A++E+EPITV++S RGW+R++K H FKEGD+L +A Sbjct: 492 T---ELGSAPTAVIVPIEALVEREPITVLLSERGWLRAVKGHQEPGEENKFKEGDALLLA 548 Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614 LHA TTD++L+L + G+ +TLPA L GRG GE ++L++DL ++ DIV+ V+D +L Sbjct: 549 LHAQTTDKLLILDSTGRFFTLPADKLARGRGFGEPVRLMLDLPNDADIVSLLVHDPARRL 608 Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFS 674 ++ +S G F+VEE +++A TR GK + V + E+ L +V GDHVAV+G+NRKLL+F Sbjct: 609 ILAASGGRGFVVEEKDVLAQTRAGKQVMTVDAGERALLCREVRGDHVAVIGQNRKLLVFP 668 Query: 675 IDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRG 734 + Q+P ++RGKGV LQ YKDGGI+D+ F I +GLTW S R+ R+E+DL WLG R Sbjct: 669 LTQVPVLARGKGVILQRYKDGGIADIKTFAIADGLTW-KSGERT--RTESDLTAWLGDRA 725 Query: 735 GVGSLVPKGFPRSGKF 750 G+G L P+GFPR+ F Sbjct: 726 GLGRLPPQGFPRTNSF 741 >gi|148260212|ref|YP_001234339.1| DNA topoisomerase IV subunit A [Acidiphilium cryptum JF-5] gi|326402843|ref|YP_004282924.1| DNA topoisomerase IV subunit A [Acidiphilium multivorum AIU301] gi|146401893|gb|ABQ30420.1| DNA topoisomerase IV subunit A [Acidiphilium cryptum JF-5] gi|325049704|dbj|BAJ80042.1| DNA topoisomerase IV subunit A [Acidiphilium multivorum AIU301] Length = 744 Score = 823 bits (2125), Expect = 0.0, Method: Compositional matrix adjust. Identities = 392/735 (53%), Positives = 521/735 (70%), Gaps = 6/735 (0%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 NV+ L AL ERYLAYALSTI R++PD+RDG KPVHRR+I AM ++ LD G+ FKK Sbjct: 8 NVQDTKLATALSERYLAYALSTIMARSLPDVRDGLKPVHRRLIFAMRQLRLDPGSGFKKC 67 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 AR+VG+V+GK HPHGD S+Y++LVRLAQ F RYPLI GQGNFGNIDGD+AAA RYTE+R Sbjct: 68 ARVVGDVMGKFHPHGDMSIYEALVRLAQDFASRYPLIEGQGNFGNIDGDNAAAMRYTESR 127 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 +T+VA +L+G+DEDAVDFR TY+ ED+EPVV P FPNLLANG +GIAVGMATSIP HN Sbjct: 128 LTEVAAALLEGIDEDAVDFRPTYDNEDTEPVVLPGAFPNLLANGAAGIAVGMATSIPPHN 187 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 E+C AA+ LI +PE LL+++ GPDFPTGG +VE R +++ +Y GRG RVRAR Sbjct: 188 AAELCAAAIHLIRHPEADTAALLDFVQGPDFPTGGELVEDRATLLSAYETGRGSLRVRAR 247 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315 W ++ G+W IVVTEIPYQVQKSRLIE++A+L+ +++PLL DIRDES E VRIVL P Sbjct: 248 WSRSDLKGGAWQIVVTEIPYQVQKSRLIEQVAQLMAERKLPLLGDIRDESTERVRIVLEP 307 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 K+R++DPD+LM S+F + E RF +NMNVL R P+VM L +L+ WL HR EVL RR Sbjct: 308 KSRTVDPDMLMASLFRATAFEQRFSMNMNVLDADRTPRVMGLREMLRAWLDHRHEVLERR 367 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435 S R+ AI RR+EIL+G L +LN+DE+I IIR ED+PKP +++ F+LT+ Q +AILN+R Sbjct: 368 SRHRLAAIARRLEILEGYLAVFLNLDEVIRIIRTEDEPKPALIAAFTLTDTQAEAILNMR 427 Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495 LRSLRKLEE +I+ E L AE++ +D++L ++W +I EI + F G R Sbjct: 428 LRSLRKLEEMEIRKEHKALTAERKALDAMLADPAKRWARIETEIEATAKTFGGGP--GAR 485 Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555 RTT + + +A++E+EP+TV++S +GWIR+LK H+V + L FKEGD LK L Sbjct: 486 RTTISGAVPVTEVAV-EALVEREPLTVILSEKGWIRALKGHAVAEAELKFKEGDRLKALL 544 Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615 + DR+ + +T+G+ Y+L A +L GRG G+AI+L++DL + ++ F+ D + L Sbjct: 545 RCSSLDRVTVFATNGRVYSLRAADLPRGRGDGQAIRLMVDLGNEDEVAALFIADPEARYL 604 Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSI 675 V + G FI+ +E+ A R GK L V ++ L KV GDH+AV+G+NRKLL+F + Sbjct: 605 VAGTDGRGFIIAGAELGAEKRTGKQILTVRPGQEAMLCRKVAGDHLAVIGQNRKLLVFPL 664 Query: 676 DQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGG 735 +Q+PEM+RG GV LQ YKDGG++D F + GL+W R+E L WLG RG Sbjct: 665 EQVPEMARGAGVILQKYKDGGLADAKAFTLASGLSWRLG---DKQRTETRLAEWLGARGQ 721 Query: 736 VGSLVPKGFPRSGKF 750 G L P GFPRSG F Sbjct: 722 AGRLPPTGFPRSGTF 736 >gi|294084097|ref|YP_003550855.1| DNA topoisomerase IV subunit A [Candidatus Puniceispirillum marinum IMCC1322] gi|292663670|gb|ADE38771.1| DNA topoisomerase IV, A subunit [Candidatus Puniceispirillum marinum IMCC1322] Length = 740 Score = 818 bits (2114), Expect = 0.0, Method: Compositional matrix adjust. Identities = 402/750 (53%), Positives = 531/750 (70%), Gaps = 11/750 (1%) Query: 1 MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60 M D +N E++ S AL ERYLAYALSTI R++PD+RDG KPVHRR++ A Sbjct: 1 MANDTYTNPG----EHIDQTSFSDALSERYLAYALSTITSRSLPDVRDGLKPVHRRLLFA 56 Query: 61 MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120 M ++ LD G FKKSAR+VG+V+GK HPHGD ++YD++VRLAQ F RY L+ GQGNFGN Sbjct: 57 MRQLKLDPGQGFKKSARVVGDVMGKFHPHGDAAIYDAMVRLAQEFAMRYRLVDGQGNFGN 116 Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180 IDGD+AAA RYTEARMT+VA L+L G+DED+VDFR TY+ E EPV+ P+ FPNLLANG Sbjct: 117 IDGDNAAAMRYTEARMTEVARLLLDGIDEDSVDFRPTYDGESEEPVLLPAGFPNLLANGA 176 Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240 GIAVGMATSIP HNV E+ +A+L LI +P SI+ L++Y+ GPDFPTGG++VE +SI Sbjct: 177 QGIAVGMATSIPPHNVIELADASLHLIKHPNASIDTLMQYVKGPDFPTGGLLVEPADSIR 236 Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300 ++Y GRGGFRVRARW +E+ G W IVVTEIPYQVQKSRLIE++AE++ AK++P+L D Sbjct: 237 DAYATGRGGFRVRARWEIEKEKGGGWQIVVTEIPYQVQKSRLIERLAEMLNAKKLPVLAD 296 Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360 IRDESAED+RIVL PK+R L+P+++MES+F LSD+ETR PLN+NVL P VM L G Sbjct: 297 IRDESAEDLRIVLEPKSRRLEPEIVMESLFKLSDLETRVPLNLNVLDATGRPGVMDLRGA 356 Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR 420 L WLAHR+ VL RR+ FR+ I R+E+L+G LI YLN+DE+IAIIR + P+ +++R Sbjct: 357 LNAWLAHRQVVLQRRAHFRLGKIAHRLEVLEGYLIVYLNLDEVIAIIRESEHPRDALIAR 416 Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480 F LTE Q +AIL++RLRSLR+LEE +++E DNL+AE+ + +LL + QW +IA EI+ Sbjct: 417 FDLTETQANAILDMRLRSLRRLEEMALRTERDNLVAEQADLQNLLANEDLQWKKIATEIK 476 Query: 481 EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL 540 ++K+ F+K RRRTT + D + ++E+EPIT++ S +GWIR++K H Sbjct: 477 DMKDSFAKHD---RRRTTLADAPEIDFDP-TEILVEREPITIICSAKGWIRAMKGHQELD 532 Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQ 600 S FKEGD + LHA TTD+ILL + +G+ YTL L GRG GE + LL DL + Sbjct: 533 SEFKFKEGDGPGLVLHAETTDKILLFADNGRFYTLAGDRLPRGRGFGEPVSLLTDLPADI 592 Query: 601 DIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH 660 +I+T + K+LV +S G+ IV+ IA TR GK L + + + V GD Sbjct: 593 EIIT-LLRGVAGKMLVAASTGHGLIVDMQSAIAQTRSGKQILNLPGDARAVACCMVDGDM 651 Query: 661 VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYN 720 VA VG NRKLL F I ++PEM+RG+GV LQ +KDGG++DV + +GL+W GR+ Sbjct: 652 VASVGVNRKLLAFPISELPEMTRGRGVILQRFKDGGLADVTVYHSDKGLSWQAGGGRT-- 709 Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750 R+E D+ W+ KR G G L P GFPR KF Sbjct: 710 RTETDMSNWIAKRAGAGKLPPTGFPRPAKF 739 >gi|114327659|ref|YP_744816.1| DNA topoisomerase IV subunit A [Granulibacter bethesdensis CGDNIH1] gi|114315833|gb|ABI61893.1| topoisomerase IV subunit A [Granulibacter bethesdensis CGDNIH1] Length = 739 Score = 818 bits (2113), Expect = 0.0, Method: Compositional matrix adjust. Identities = 394/737 (53%), Positives = 527/737 (71%), Gaps = 13/737 (1%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 V+ L AL ERYLAYALSTI R++PD+RDG KPVHRR+I+AM ++ LD A FKK A Sbjct: 11 VEDTRLADALSERYLAYALSTIMARSLPDVRDGLKPVHRRLIYAMHQLRLDPDAGFKKCA 70 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 RIVG+VIGK HPHGD + Y++LVRLAQ F RYPL+ GQGNFGNIDGD AAAYRYTEAR+ Sbjct: 71 RIVGDVIGKYHPHGDSAAYEALVRLAQDFASRYPLVDGQGNFGNIDGDGAAAYRYTEARL 130 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 T+VA +L+G+D+DAVD R TYN E+ EP V P+ FPNLLANG +GIAVGMATSIP HN Sbjct: 131 TEVARTMLEGIDDDAVDLRPTYNAEEVEPAVLPAAFPNLLANGAAGIAVGMATSIPPHNA 190 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 ++C+AALALI+NP+ LL+++ GPDFPTGGI+VE R S++++Y GRGGFRVRARW Sbjct: 191 GQVCDAALALIENPQADTAMLLDHLKGPDFPTGGILVEDRASMLQAYETGRGGFRVRARW 250 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316 E+ GSW I++TEIPYQVQK+RLIE++A L+ K++PLL DIRDES E VRIVL PK Sbjct: 251 HKEDGRLGSWRIIITEIPYQVQKARLIEQVAALMEEKKLPLLADIRDESTETVRIVLEPK 310 Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376 +R++ PD+LME++F + +E+RFPLNMNVL R P+VM + +L++WL HR EVL RRS Sbjct: 311 SRTIAPDVLMETMFRATALESRFPLNMNVLDATRTPRVMGVKEVLRQWLDHRHEVLIRRS 370 Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRL 436 + R+ +IDRR+EIL G L+ YLN+DE+I I+R ED+PK +++ FSLT+ Q +++LN+RL Sbjct: 371 THRLASIDRRLEILDGFLLVYLNLDEVIRIVREEDEPKAALIAAFSLTDMQAESVLNMRL 430 Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496 RSLRKLEE +I+ E L E++ +D+LL S +W +IA E+ V++ F S LG RR Sbjct: 431 RSLRKLEEMEIRREHAKLSKERKDLDALLKSEPLRWKRIAHEVAAVRDQFG-SGKLGDRR 489 Query: 497 TTFCEVSRADKATLQ---QAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKI 553 T AT++ +A +E+EPITV++S +GW+R+LK H D L FKEGD+L+ Sbjct: 490 TDIA----GPPATVEVAAEAFVEREPITVILSEKGWMRALKGHIADTVELRFKEGDALRF 545 Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613 AL TTDR+ LL+T+GKAYTL A +L GRG G+ ++LL + D++ V + Sbjct: 546 ALPCETTDRLCLLATNGKAYTLKAADLPRGRGDGQPVRLLAGFGNEDDVIALLVPKEEAR 605 Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIF 673 L+VSS G F++ ++++A R G+ L V E+ V GDHVAV+ E+RKLL+F Sbjct: 606 YLLVSSAGRGFVIRGADLLAEKRTGRQALNVKPGEEAAFCVPAEGDHVAVISESRKLLVF 665 Query: 674 SIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKR 733 ++Q+PEM+RG GV L K G D++ + GL+W+ R E DL WLG R Sbjct: 666 PLEQVPEMARGAGVILN--KGGAPRDIMVLTLAHGLSWMSG---EKQRVERDLSYWLGAR 720 Query: 734 GGVGSLVPKGFPRSGKF 750 G G + P GFP+SG+F Sbjct: 721 GQSGKVPPNGFPKSGRF 737 >gi|114570117|ref|YP_756797.1| DNA topoisomerase IV subunit A [Maricaulis maris MCS10] gi|114340579|gb|ABI65859.1| DNA topoisomerase IV subunit A [Maricaulis maris MCS10] Length = 758 Score = 817 bits (2110), Expect = 0.0, Method: Compositional matrix adjust. Identities = 391/726 (53%), Positives = 524/726 (72%), Gaps = 2/726 (0%) Query: 25 ALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIG 84 AL RYLAYALSTI +RA+PD RDG KPVHRR+++AM E+ L+ AFKKSAR+VG+VIG Sbjct: 20 ALSRRYLAYALSTITQRALPDARDGLKPVHRRLLYAMRELKLNPDQAFKKSARVVGDVIG 79 Query: 85 KLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELIL 144 K HPHGDQSVY++LVRLAQ F RYPL+ GQGNFGNIDGD AAA RYTEAR+T+ AEL+L Sbjct: 80 KYHPHGDQSVYEALVRLAQDFASRYPLVEGQGNFGNIDGDGAAAMRYTEARLTKAAELLL 139 Query: 145 QGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAAL 204 Q +D+ VDF +TY+ + EP+V P FPNLLANG++GIAVGMATS+P HNV EIC AAL Sbjct: 140 QDIDQGTVDFEETYDGSEREPLVLPGAFPNLLANGSTGIAVGMATSVPPHNVAEICAAAL 199 Query: 205 ALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRG 264 ALID PE E LL++I GPD PTGG IVE E+I +Y GRGGFRVRA+W E++GRG Sbjct: 200 ALIDKPETETEALLKHIKGPDLPTGGTIVEPPEAIRSAYETGRGGFRVRAKWEKEDIGRG 259 Query: 265 SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDL 324 W IVVTEIPY VQKS+L+E+IA+L+ AK++PLL+D+ DES ED+R+VL PK++ +DPD+ Sbjct: 260 MWRIVVTEIPYLVQKSKLVERIAQLMDAKKLPLLDDVLDESTEDIRLVLEPKSKLVDPDM 319 Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384 LMES+F L+D+ETR LN+NVL VP+VM L +L+ WL HRREV RR++ R+ ++ Sbjct: 320 LMESLFKLTDLETRVSLNLNVLDPRGVPRVMGLREVLQIWLEHRREVAVRRATTRLAKVE 379 Query: 385 RRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEE 444 R+E+L G LI Y ++DE+I IIR ED+PK +++ F LTE Q +AILN+RLR+LRKLEE Sbjct: 380 DRLEVLAGYLIVYADLDEVIRIIRFEDEPKAKLMAHFELTERQAEAILNMRLRALRKLEE 439 Query: 445 YQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSR 504 +I+ E NL AE++ + L+ S QW+++ E++ + EI++++T LG+RRT F + Sbjct: 440 LEIRKEDTNLRAERKTLKELIGSTALQWDKVRGEVKSLGEIYAETTPLGKRRTVFDKAPD 499 Query: 505 ADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRIL 564 +A + +EPIT V+S RGW+R+LK H D++ L FKEGD A+ TTDR+L Sbjct: 500 ISGEAPIEAFVVREPITAVLSERGWVRALKGHINDVTELKFKEGDKSAFAVKCETTDRLL 559 Query: 565 LLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAF 624 + +TDGK YTL A L GRGHGE ++L +DL + + F YD LLV S + F Sbjct: 560 MFATDGKFYTLEASKLPGGRGHGEPVRLHVDLPDDAAPIGLFKYDPERTLLVASDGNSGF 619 Query: 625 IVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRG 684 ++E + +A + GK L ++ ++ L + TGD VA++GEN+KLL+F +++IP MSRG Sbjct: 620 RIQEKDCLALKKGGKQILNLAEGDEAFLCIPATGDRVALIGENKKLLVFELEEIPVMSRG 679 Query: 685 KGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGF 744 KGV+L K ++D F +GLTW+D AGR +N +D L W KR G + P+GF Sbjct: 680 KGVKLLGGKGAKLADATVFNAEDGLTWLDGAGRRFNL--DDWLLWTAKRAQAGKMAPRGF 737 Query: 745 PRSGKF 750 PRS +F Sbjct: 738 PRSLRF 743 >gi|83949819|ref|ZP_00958552.1| DNA topoisomerase IV subunit A [Roseovarius nubinhibens ISM] gi|83837718|gb|EAP77014.1| DNA topoisomerase IV subunit A [Roseovarius nubinhibens ISM] Length = 768 Score = 816 bits (2107), Expect = 0.0, Method: Compositional matrix adjust. Identities = 396/756 (52%), Positives = 534/756 (70%), Gaps = 28/756 (3%) Query: 19 AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78 A LR A+ ERYL YALSTI RA+PD RDG KPVHRRII+AM E+ L F+KSA+I Sbjct: 16 AEPLRRAIGERYLTYALSTIMHRALPDARDGLKPVHRRIIYAMRELRLGSTGGFRKSAKI 75 Query: 79 VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138 G+V+G HPHGD ++YD++ RLAQ F RYPL+ GQGNFGNIDGD+ AA RYTEARMT Sbjct: 76 SGDVMGNYHPHGDAAIYDAMARLAQDFAVRYPLVDGQGNFGNIDGDNPAASRYTEARMTA 135 Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198 VAE +L+G+ E+AVDFRD Y+ +EPVV P+ FPNLLANG+SGIAVGMAT+IP HN+ E Sbjct: 136 VAEAMLEGLAENAVDFRDNYDGTLTEPVVLPASFPNLLANGSSGIAVGMATNIPPHNIPE 195 Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258 + +A L LI P+ + LL Y+ GPDFPTGGIIVE RE+I E+YR GRG FR+R R+ V Sbjct: 196 LVDACLHLIKVPDARDDTLLNYVPGPDFPTGGIIVEPRENIAEAYRTGRGAFRLRCRYEV 255 Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318 E++GRG W IVVTEIPYQVQKS+LIEK+AE+I K++P+L D+RDESA+D+R++L P+++ Sbjct: 256 EDLGRGQWQIVVTEIPYQVQKSKLIEKLAEVIQTKKVPILADVRDESADDIRVILEPRSK 315 Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378 ++DP++LM ++ +D+E RF LNMNVL G P+V + +L+ +L RREVL RRS Sbjct: 316 NVDPEVLMGMLYRSTDLEVRFSLNMNVLIDGVTPKVCSMKEVLRAFLDFRREVLQRRSVH 375 Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK-----------------------P 415 RM+ ID R+E+L+GL++A+LN+D +I IIR ++ PK P Sbjct: 376 RMEKIDHRLEVLEGLIVAFLNLDRVIDIIRYDEDPKAALMREDWGRDFVRAMDEADYVPP 435 Query: 416 VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQI 475 + LTE Q +A+LN+RLR+LR+LEE + E D L+ E+ ++ LL S QW I Sbjct: 436 APGAPDGLTEVQAEAVLNMRLRALRRLEEMALVKERDALMEERAGLEDLLESEDLQWAAI 495 Query: 476 ACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKS 535 + ++RE K+ F K + G RRTTF E ++ + +AMIE+EPITVV S GWIR++ Sbjct: 496 SDQLREAKKTFGKDYEGGARRTTFAEAGEVEEVPI-EAMIEREPITVVCSQMGWIRAMTG 554 Query: 536 HSVDLS-ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLI 594 H +DL L FK+GD HA TTDR+L+ ++ G+ YT+ A NL GRG GE ++L++ Sbjct: 555 H-IDLGRELKFKDGDGPSFMFHAETTDRLLVFASTGRFYTISAANLPGGRGMGEPLRLMV 613 Query: 595 DLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654 DL + +I+ F++ K+L+ SS G+ F+V E E++A TR GK L V + + ++ Sbjct: 614 DLPNEAEIIDIFIHKPGGKMLLASSAGDGFVVPEEELLAQTRTGKQVLNVRGDTRARVCK 673 Query: 655 KVTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDS 714 V+GDHVAVVGENRK+L+F +D++PEM RGKGVRLQ YKDGG+SD F + EGL+W+D Sbjct: 674 PVSGDHVAVVGENRKVLVFPLDELPEMGRGKGVRLQKYKDGGLSDATTFTLAEGLSWLDP 733 Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750 AGR+ R+E DL WLGKR G G + P+GFPR +F Sbjct: 734 AGRT--RTETDLGEWLGKRAGTGRMAPRGFPRDNRF 767 >gi|84499895|ref|ZP_00998161.1| DNA topoisomerase IV subunit A [Oceanicola batsensis HTCC2597] gi|84391829|gb|EAQ04097.1| DNA topoisomerase IV subunit A [Oceanicola batsensis HTCC2597] Length = 769 Score = 815 bits (2104), Expect = 0.0, Method: Compositional matrix adjust. Identities = 398/760 (52%), Positives = 532/760 (70%), Gaps = 29/760 (3%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 + A L A+ +RYL YALSTI RA+PD RDG KPVHRRI++AM E+ L G F+KS Sbjct: 13 DTSAEPLSRAIGDRYLTYALSTIMHRALPDARDGLKPVHRRILYAMRELRLSAGGRFRKS 72 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 ++I G+V+G HPHGDQ++YD++ RLAQ F RYPL+ GQGNFGNIDGD+ AA RYTEAR Sbjct: 73 SKISGDVMGNFHPHGDQAIYDAMARLAQDFNVRYPLVDGQGNFGNIDGDNPAASRYTEAR 132 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 +T +AE +++G+ E+AVDFRD Y+ +EPVV P+ PNLLANG SGIAVGMAT+IP HN Sbjct: 133 LTAIAEAMMEGLAENAVDFRDNYDGTLTEPVVLPAAIPNLLANGASGIAVGMATNIPPHN 192 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 ++E+C AAL LI P+ E LL Y+ GPDFPTGG +VE R ++ E+YR GRG FR+RA+ Sbjct: 193 IEELCNAALHLIKTPDARDETLLNYVPGPDFPTGGTMVEPRVNVAEAYRTGRGSFRLRAK 252 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315 W E++GRG W IVVTEIPYQVQKSRLIEKIAELI KR+P+L DIRDESA+D+R++L P Sbjct: 253 WEKEDLGRGQWQIVVTEIPYQVQKSRLIEKIAELIQTKRVPILADIRDESADDIRMILEP 312 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 +++++DPD+LM +F SD+E RF LNMNVL G P+V L +L+ +L HRREVL RR Sbjct: 313 RSKAVDPDVLMNMLFRNSDLEVRFSLNMNVLIDGVTPKVCSLKEVLRAFLDHRREVLLRR 372 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR--------------- 420 S RM+ ID R+E+L+G +IA+LN+D +I IIR +D PK +++ Sbjct: 373 SRHRMEKIDHRLEVLEGFIIAFLNLDRVIDIIRYDDDPKAALMAEDWSVKRGRAASEADY 432 Query: 421 ---------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQ 471 L+E Q +AILN+RLRSLR+LEE ++ E D L+ E+ ++ LL S Q Sbjct: 433 VSPIGLDAAGELSEVQAEAILNMRLRSLRRLEELELIRERDALMEERAGLEDLLESEDLQ 492 Query: 472 WNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR 531 W +I+ +IREV++ F ++ G RRT E ++ L +AMIE+EPITVV S GW+R Sbjct: 493 WVRISDQIREVRKTFGAKSEGGARRTLIEEAGEVEEVPL-EAMIEREPITVVCSRMGWVR 551 Query: 532 SLKSHSVDLS-ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAI 590 ++K H +DL+ L FK+GD + A HA TTDR+L+ T+G+ YT+ A NL GRG GE + Sbjct: 552 AMKGH-IDLTQKLKFKDGDEGRFAFHAETTDRLLVFGTNGRFYTVSASNLPGGRGMGEPL 610 Query: 591 QLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM 650 +L+ID + DIV ++ KL+V SS G+ F+V E +++A TR GK L V + Sbjct: 611 RLMIDFPNEADIVDILIHKPGRKLVVASSAGDGFLVSEDDVLAQTRSGKQVLNVRGDATA 670 Query: 651 KLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLT 710 + V GD VAVVGENRK+L+F ++ +PEM+RGKGVRLQ YKDGG+SDV F + EGL+ Sbjct: 671 LVCKPVQGDTVAVVGENRKVLVFPVEDLPEMARGKGVRLQKYKDGGLSDVTTFNLAEGLS 730 Query: 711 WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750 W D AGR R +++L W G+R G G + P+GFPR KF Sbjct: 731 WFDPAGR--RRVQSELAEWTGRRAGSGRMAPRGFPRDNKF 768 >gi|110678712|ref|YP_681719.1| DNA topoisomerase IV subunit A [Roseobacter denitrificans OCh 114] gi|109454828|gb|ABG31033.1| DNA topoisomerase IV, A subunit [Roseobacter denitrificans OCh 114] Length = 765 Score = 812 bits (2098), Expect = 0.0, Method: Compositional matrix adjust. Identities = 397/753 (52%), Positives = 531/753 (70%), Gaps = 28/753 (3%) Query: 22 LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81 LR AL ERYL YALSTI RA+PD RDG KPVHRRI++AM E+ L F+KSA+I G+ Sbjct: 16 LRRALGERYLTYALSTIMHRALPDARDGLKPVHRRILYAMRELRLSSTGGFRKSAKISGD 75 Query: 82 VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE 141 V+G HPHGD ++YD++ RLAQ F RYPL+ GQGNFGNIDGD+ AA RYTEARMT VAE Sbjct: 76 VMGNYHPHGDAAIYDAMARLAQDFNVRYPLVDGQGNFGNIDGDNPAASRYTEARMTAVAE 135 Query: 142 LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICE 201 +L+G++E+AVDFR+ Y+ +EPVV P++FPNLLANG+SGIAVGMAT+IP HN+ E+C+ Sbjct: 136 AMLEGLNENAVDFRENYDGTLTEPVVLPAQFPNLLANGSSGIAVGMATNIPPHNIAELCD 195 Query: 202 AALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEV 261 A + LI P+ + LL+Y+ GPDFPTGG+IVE E+I ++YR G+GGFR+R RW VE++ Sbjct: 196 ACIHLIKTPDARDDTLLKYVPGPDFPTGGVIVEPPENIAQAYRTGKGGFRLRCRWEVEDL 255 Query: 262 GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLD 321 GRG W IVVTEIPYQVQKS+LIEKIAELI K+IP+L D+RDESA+D+R+++ P++RS+D Sbjct: 256 GRGQWQIVVTEIPYQVQKSKLIEKIAELIQTKKIPILADVRDESADDIRMIIEPRSRSVD 315 Query: 322 PDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQ 381 PD+LM +F D+E RF LNMNVL G P+V + +L+ +L HR+EVL RRS+ R++ Sbjct: 316 PDVLMGMLFRNCDLEVRFSLNMNVLIDGVTPKVCSMKEVLQAFLDHRQEVLQRRSTHRLE 375 Query: 382 AIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK-----------------------PVMV 418 ID R+E+L+G +IA+LN+D +I IIR +D PK PV Sbjct: 376 KIDHRLEVLEGFIIAFLNLDRVIDIIRYDDDPKAALMAEDWGRDHPRALNEADYVPPVST 435 Query: 419 SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE 478 +LTE Q +AILN+RLRSLR+LEE ++ E + L+ E+ ++ LL + QW I + Sbjct: 436 DDVTLTEVQAEAILNMRLRSLRRLEEMELVREQEALMEERAGLEDLLENPGLQWASITEQ 495 Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV 538 +R K+ F K D G RRTTF E + + + +AMI++EPITVV S GW+R++ H + Sbjct: 496 LRATKKQFGKDWDGGARRTTFSEAAVIEDVPI-EAMIDREPITVVCSQMGWVRAMTGH-I 553 Query: 539 DLS-ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLN 597 DL L FK+GD + HA TTDR+L+ ++G+ YT+ A +L GRG GE ++L+IDL Sbjct: 554 DLGRELKFKDGDGPRFIFHAETTDRLLVFGSNGRFYTVSASSLPGGRGMGEPLRLMIDLP 613 Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657 + +IVT + KLLV SS G+ F+V E++++A TR GK L V + + + V Sbjct: 614 NEAEIVTILTHAPDRKLLVASSAGDGFVVPEADVVAQTRTGKQVLNVRGDTRAMICKPVN 673 Query: 658 GDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGR 717 GD VAVVGENRK+L+F ++ +PEM RGKGVRLQ YKDGG+SD F EGL+W+D AGR Sbjct: 674 GDTVAVVGENRKVLVFPLEDLPEMGRGKGVRLQKYKDGGLSDATTFMRAEGLSWLDPAGR 733 Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750 + RSE DL W GKR G + P+GFPR KF Sbjct: 734 T--RSETDLAEWTGKRATAGRMAPRGFPRDNKF 764 >gi|332560122|ref|ZP_08414444.1| DNA topoisomerase IV subunit A [Rhodobacter sphaeroides WS8N] gi|332277834|gb|EGJ23149.1| DNA topoisomerase IV subunit A [Rhodobacter sphaeroides WS8N] Length = 767 Score = 811 bits (2095), Expect = 0.0, Method: Compositional matrix adjust. Identities = 394/751 (52%), Positives = 531/751 (70%), Gaps = 25/751 (3%) Query: 22 LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81 LR A+ ERYL YALSTI RA+PD RDG KPVHRRI+ AM E+ L F+KSA+I G+ Sbjct: 19 LRRAIGERYLTYALSTIMHRALPDARDGLKPVHRRILFAMRELRLSPTGGFRKSAKIAGD 78 Query: 82 VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE 141 V+G HPHGD ++YD++ RLAQ F RYPL+ GQGNFGNIDGD+ AA RYTEAR+T +AE Sbjct: 79 VMGNYHPHGDAAIYDAMARLAQDFNVRYPLVDGQGNFGNIDGDNPAASRYTEARLTPIAE 138 Query: 142 LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICE 201 L+++G+ E+AVDFR Y+ EPVV P+ FPNLLANG SGIAVGMAT+IP HN+ E+ E Sbjct: 139 LLMEGLAENAVDFRPNYDGTLEEPVVMPAAFPNLLANGASGIAVGMATNIPPHNLDELIE 198 Query: 202 AALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEV 261 LALI +P I+ + L+ I GPDFPTGG+IVE +E I+E+YR GRGGFR+RA+W E++ Sbjct: 199 GCLALIRDPAIADDTLVSLIPGPDFPTGGVIVEPKEQILEAYRTGRGGFRLRAKWQTEDL 258 Query: 262 GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLD 321 GRG+W IVVTEIPYQVQKS+LIE++AELI K++P L D+RDESA+DVRIVL P+ R++D Sbjct: 259 GRGTWQIVVTEIPYQVQKSKLIERLAELIQTKKVPALADVRDESADDVRIVLEPRARTVD 318 Query: 322 PDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQ 381 P++LM +F SD+E RF LNMNVL GR P+V L +L+ +L HRR+VL RRS RM+ Sbjct: 319 PEMLMGMLFRNSDLEIRFSLNMNVLIDGRTPRVCSLKEVLRAFLDHRRDVLIRRSQHRME 378 Query: 382 AIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS-----RFS-------------- 422 ID R+E+L GL++A+LN+D +I IIR + PK +++ RF Sbjct: 379 KIDHRLEVLGGLIVAFLNLDRVIDIIRYDADPKRALMAESWGRRFKRANSEKDYVGPGPG 438 Query: 423 ---LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479 L+E Q +AILN+RLRSLR+LEE ++ +E D LLAE+ +++L+ S + QW++I ++ Sbjct: 439 PGDLSEVQAEAILNMRLRSLRRLEEMELLAERDALLAERADLEALIGSERLQWDRIGHDL 498 Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539 E++++F K T G RRT F E ++ L +AMIE+EPITV+ S GWIR++K H Sbjct: 499 GEIRKLFGKWTVAGARRTQFAEAGEVEEVPL-EAMIEREPITVICSQMGWIRAMKGHQPL 557 Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHN 599 + FK+GD + HA TTDR+LL+ ++G+ YTL +L GRG GE ++L++DL + Sbjct: 558 DTEAKFKDGDGPRFLFHAETTDRLLLVGSNGRFYTLTGASLPGGRGMGEPVRLMVDLPNE 617 Query: 600 QDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD 659 +I FV+ KLL+ SS G+ F+V E++A TR GK L + + + V GD Sbjct: 618 AEIHDIFVWRPAEKLLLASSAGDGFVVPSEEVLAQTRAGKAVLSMKEGVRTAVCRPVRGD 677 Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719 HVAVVGENRKLL+F + ++PEM++GKGVRLQ YKDGG+SD I F+I GL+W D AGR+ Sbjct: 678 HVAVVGENRKLLVFPVSELPEMAKGKGVRLQKYKDGGLSDAITFEIARGLSWKDPAGRT- 736 Query: 720 NRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750 R+E +L W R G G + P+GFPR +F Sbjct: 737 -RTETELAEWTAARAGAGKMAPRGFPRDNRF 766 >gi|85705044|ref|ZP_01036144.1| DNA topoisomerase IV subunit A [Roseovarius sp. 217] gi|85670366|gb|EAQ25227.1| DNA topoisomerase IV subunit A [Roseovarius sp. 217] Length = 768 Score = 811 bits (2095), Expect = 0.0, Method: Compositional matrix adjust. Identities = 401/770 (52%), Positives = 541/770 (70%), Gaps = 32/770 (4%) Query: 9 SNTLVEENVK--AVS--LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEM 64 S+ L + N++ AVS LR A+ ERYL YALSTI RA+PD RDG KPVHRRI++AM E+ Sbjct: 2 SDLLDDPNMQPEAVSEPLRRAIGERYLTYALSTIMHRALPDARDGLKPVHRRILYAMREL 61 Query: 65 GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124 L F+KSA+I G+V+G HPHGD ++YD++ RLAQ F RYPL+ GQGNFGNIDGD Sbjct: 62 RLSSTGGFRKSAKISGDVMGNYHPHGDAAIYDAMARLAQDFAVRYPLVDGQGNFGNIDGD 121 Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184 + AA RYTEARMT AE +L G+ EDAVDFRD Y+ EP+V P+ FPNLLANG+SGIA Sbjct: 122 NPAASRYTEARMTAFAEALLDGLAEDAVDFRDNYDGTLREPIVLPASFPNLLANGSSGIA 181 Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244 VGMAT+IP HN+ E+ +A L LI +P+ E LL YI GPDFPTGG+IVE ESI ++Y Sbjct: 182 VGMATNIPPHNIAELIDACLHLIKSPDARDETLLTYIPGPDFPTGGVIVEPPESIAQAYL 241 Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304 GRG FR+R +W +E++GRG W IVVTEIPYQVQKS+LIE+IAELI +++P+L D+RDE Sbjct: 242 TGRGAFRLRCKWALEDLGRGQWQIVVTEIPYQVQKSKLIERIAELIQTRKVPILADVRDE 301 Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364 SA+DVR+VL P+++++DP++LM ++ S++E RF LNMNVL G P+V L +L+ + Sbjct: 302 SADDVRLVLEPRSKNVDPEVLMGMMYRNSELELRFSLNMNVLIDGVTPKVCSLKEVLRAF 361 Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---------- 414 L R+EVL RRS+ RM+ ID R+E+L+GL++A+LN+D +I IIR +D PK Sbjct: 362 LDFRQEVLLRRSAHRMEKIDHRLEVLEGLIVAFLNLDRVIDIIRYDDDPKAALMREDWGR 421 Query: 415 -------------PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKI 461 P LT+ Q +AILN+RLRSLR+LEE ++++E D L+ E+ + Sbjct: 422 TVPRAMSEADYVSPPPTDEPGLTDVQAEAILNMRLRSLRRLEEMELRAERDALMQERAGL 481 Query: 462 DSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPIT 521 + LL QW +A +++EV++ F K+ +G RRT F E ++ L +AMI++EPIT Sbjct: 482 EDLLEDVSLQWAAVADQLKEVQKTFGKTHPIGARRTKFAEAGSVEEVPL-EAMIDREPIT 540 Query: 522 VVISNRGWIRSLKSHSVDLS-ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL 580 VV S GWIR++ H +DLS L FK+GD+ + HA TTDRIL+ ++G+ YT+ A NL Sbjct: 541 VVCSQMGWIRAMTGH-LDLSRELKFKDGDAPRFMFHAETTDRILVFGSNGRFYTISASNL 599 Query: 581 LSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKT 640 GRG GE ++L++DL + IV ++ KLLV S+ G+ FIV E E+IA TR GK Sbjct: 600 PGGRGMGEPLRLMVDLPNEAAIVDLLIHKPGRKLLVASTAGDGFIVPEDEVIAQTRSGKQ 659 Query: 641 FLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDV 700 L + + + VTGDHVA VG+NRK+L+FS+D++PE+ RGKGVRLQ YKDGG+SD Sbjct: 660 VLNLKDPARASVCRPVTGDHVACVGDNRKVLVFSLDELPELGRGKGVRLQKYKDGGLSDA 719 Query: 701 ICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750 F + EGLTW D AGR+ R+E++L WLGKR G G + P+GFPR +F Sbjct: 720 TTFNLAEGLTWRDPAGRT--RTESNLEEWLGKRAGSGRMAPRGFPRDNRF 767 >gi|163733835|ref|ZP_02141277.1| DNA topoisomerase IV subunit A [Roseobacter litoralis Och 149] gi|161392946|gb|EDQ17273.1| DNA topoisomerase IV subunit A [Roseobacter litoralis Och 149] Length = 768 Score = 810 bits (2093), Expect = 0.0, Method: Compositional matrix adjust. Identities = 397/753 (52%), Positives = 530/753 (70%), Gaps = 28/753 (3%) Query: 22 LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81 LR AL ERYL YALSTI RA+PD RDG KPVHRRI++AM E+ L F+KSA+I G+ Sbjct: 19 LRRALGERYLTYALSTIMHRALPDARDGLKPVHRRILYAMRELRLSSTGGFRKSAKISGD 78 Query: 82 VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE 141 V+G HPHGD ++YD++ RLAQ F RYPL+ GQGNFGNIDGD+ AA RYTEARMT VAE Sbjct: 79 VMGNYHPHGDAAIYDAMARLAQDFNVRYPLVDGQGNFGNIDGDNPAASRYTEARMTAVAE 138 Query: 142 LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICE 201 +L G++E+AVDFR+ Y+ +EPVV P++FPNLLANG+SGIAVGMAT+IP HN+ E+CE Sbjct: 139 AMLDGLNENAVDFRENYDGTLTEPVVLPAQFPNLLANGSSGIAVGMATNIPPHNIAELCE 198 Query: 202 AALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEV 261 A + LI P+ + LL+Y+ GPDFPTGG+IVE E+I ++YR G+GGFR+R RW VE++ Sbjct: 199 ACIHLIKTPDARDDTLLKYVPGPDFPTGGVIVEPPENIAQAYRTGKGGFRLRCRWEVEDL 258 Query: 262 GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLD 321 GRG W IVVTEIPYQVQKS+LIEKIAELI K+IP+L D+RDESA+DVR+++ P++RS+D Sbjct: 259 GRGQWQIVVTEIPYQVQKSKLIEKIAELIQTKKIPILADVRDESADDVRMIIEPRSRSVD 318 Query: 322 PDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQ 381 D+LM +F D+E RF LNMNVL G P+V + +L+ +L HR+EVL RRS R++ Sbjct: 319 ADVLMGMLFRYCDLELRFSLNMNVLIDGVTPKVCSMKEVLQAFLDHRQEVLQRRSQHRLE 378 Query: 382 AIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK-----------------------PVMV 418 ID R+E+L+G +IA+LN+D +I IIR +D PK PV Sbjct: 379 KIDHRLEVLEGFIIAFLNLDRVIDIIRYDDDPKAALMAEDWGKDHPRALNEADYVPPVPT 438 Query: 419 SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE 478 +LTE Q +AILN+RLRSLR+LEE ++ E + L+AE+ ++ LL S + QW I + Sbjct: 439 DDVTLTEVQAEAILNMRLRSLRRLEEMELVREQEALMAERAALEDLLESPELQWASITEQ 498 Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV 538 +R K+ F K D G RRTTF E + + + +AMI++EPITVV S GW+R++ H + Sbjct: 499 LRATKKQFGKDWDGGARRTTFSEATVIEDVPI-EAMIDREPITVVCSEMGWVRAMTGH-I 556 Query: 539 DLS-ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLN 597 DL+ L FK+GD + HA TTDR+L+ ++G+ YT+ A +L GRG GE ++L+IDL Sbjct: 557 DLTRELKFKDGDGPRFIFHAETTDRLLVFGSNGRFYTVSASSLPGGRGMGEPLRLMIDLP 616 Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657 + +I+T + KLLV SS G+ F+V E++++A TR GK L V + + + V Sbjct: 617 NEAEIITILTHAPNRKLLVASSAGDGFVVPEADVVAQTRTGKQVLNVRGDTRAMICKAVQ 676 Query: 658 GDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGR 717 GD VAVVGENRK+L+F + ++PEM RGKGVRLQ YKDGG+SD F +GL+W D AGR Sbjct: 677 GDTVAVVGENRKVLVFPVGELPEMGRGKGVRLQKYKDGGLSDATTFMQADGLSWQDPAGR 736 Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750 + RSE +L W GKR G + P+GFPR KF Sbjct: 737 T--RSETELAEWTGKRATAGRMAPRGFPRDNKF 767 >gi|221641196|ref|YP_002527458.1| DNA topoisomerase IV subunit A [Rhodobacter sphaeroides KD131] gi|221161977|gb|ACM02957.1| DNA topoisomerase IV subunit A [Rhodobacter sphaeroides KD131] Length = 767 Score = 810 bits (2091), Expect = 0.0, Method: Compositional matrix adjust. Identities = 393/751 (52%), Positives = 530/751 (70%), Gaps = 25/751 (3%) Query: 22 LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81 LR A+ ERYL YALSTI RA+PD RDG KPVHRRI+ AM E+ L F+KSA+I G+ Sbjct: 19 LRRAIGERYLTYALSTIMHRALPDARDGLKPVHRRILFAMRELRLSPTGGFRKSAKIAGD 78 Query: 82 VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE 141 V+G HPHGD ++YD++ RLAQ F RYPL+ GQGNFGNIDGD+ AA RYTEAR+T +AE Sbjct: 79 VMGNYHPHGDAAIYDAMARLAQDFNVRYPLVDGQGNFGNIDGDNPAASRYTEARLTPIAE 138 Query: 142 LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICE 201 L+++G+ E+AVDFR Y+ EPVV P+ FPNLLANG SGIAVGMAT+IP HN+ E+ E Sbjct: 139 LLMEGLAENAVDFRPNYDGTLEEPVVMPAAFPNLLANGASGIAVGMATNIPPHNLDELIE 198 Query: 202 AALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEV 261 LALI +P I+ + L+ I GPDFPTGG+IVE +E I+E+YR GRG FR+RA+W E++ Sbjct: 199 GCLALIRDPAIADDTLVSLIPGPDFPTGGVIVEPKEQILEAYRTGRGAFRLRAKWQTEDL 258 Query: 262 GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLD 321 GRG+W IVVTEIPYQVQKS+LIE++AELI K++P L D+RDESA+DVRIVL P+ R++D Sbjct: 259 GRGTWQIVVTEIPYQVQKSKLIERLAELIQTKKVPALADVRDESADDVRIVLEPRARTVD 318 Query: 322 PDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQ 381 P++LM +F SD+E RF LNMNVL GR P+V L +L+ +L HRR+VL RRS RM+ Sbjct: 319 PEMLMGMLFRNSDLEIRFSLNMNVLIDGRTPRVCSLKEVLRAFLDHRRDVLIRRSQHRME 378 Query: 382 AIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS-----RFS-------------- 422 ID R+E+L GL++A+LN+D +I IIR + PK +++ RF Sbjct: 379 KIDHRLEVLGGLIVAFLNLDRVIDIIRYDADPKRALMAESWERRFKRANSEKDYVGPGPG 438 Query: 423 ---LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479 L+E Q +AILN+RLRSLR+LEE ++ +E D LLAE+ +++L+ S + QW++I ++ Sbjct: 439 PGDLSEVQAEAILNMRLRSLRRLEEMELLAERDALLAERADLEALIGSERLQWDRIGHDL 498 Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539 E++++F K T G RRT F E ++ L +AMIE+EPITV+ S GWIR++K H Sbjct: 499 GEIRKLFGKWTVAGARRTQFAEAGEVEEVPL-EAMIEREPITVICSQMGWIRAMKGHQPL 557 Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHN 599 + FK+GD + HA TTDR+LL+ ++G+ YTL +L GRG GE ++L++DL + Sbjct: 558 DTEAKFKDGDGPRFLFHAETTDRLLLVGSNGRFYTLTGASLPGGRGMGEPVRLMVDLPNE 617 Query: 600 QDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD 659 +I FV+ KLL+ SS G+ F+V E++A TR GK L + + + V GD Sbjct: 618 AEIHDIFVWRPAEKLLLASSAGDGFVVPSEEVLAQTRAGKAVLSMKEGVRTAVCRPVRGD 677 Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719 HVAVVGENRKLL+F + ++PEM++GKGVRLQ YKDGG+SD I F+I GL+W D AGR+ Sbjct: 678 HVAVVGENRKLLVFPVSELPEMAKGKGVRLQKYKDGGLSDAITFEIARGLSWKDPAGRT- 736 Query: 720 NRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750 R+E +L W R G G + P+GFPR +F Sbjct: 737 -RTETELAEWTAARAGAGKMAPRGFPRDNRF 766 >gi|149201652|ref|ZP_01878626.1| DNA topoisomerase IV subunit A [Roseovarius sp. TM1035] gi|149144700|gb|EDM32729.1| DNA topoisomerase IV subunit A [Roseovarius sp. TM1035] Length = 768 Score = 809 bits (2090), Expect = 0.0, Method: Compositional matrix adjust. Identities = 402/770 (52%), Positives = 540/770 (70%), Gaps = 32/770 (4%) Query: 9 SNTLVEENVK--AVS--LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEM 64 S+ L + N++ AVS LR A+ ERYL YALSTI RA+PD RDG KPVHRRI++AM E+ Sbjct: 2 SDLLDDPNMQPEAVSEPLRRAIGERYLTYALSTIMHRALPDARDGLKPVHRRILYAMREL 61 Query: 65 GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124 L F+KSA+I G+V+G HPHGD ++YD++ RLAQ F RYPL+ GQGNFGNIDGD Sbjct: 62 RLSSSGGFRKSAKISGDVMGNYHPHGDAAIYDAMARLAQDFAVRYPLVDGQGNFGNIDGD 121 Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184 + AA RYTEARMT AE +L G+ EDAVDFRD Y+ EPVV P+ FPNLLANG+SGIA Sbjct: 122 NPAASRYTEARMTAFAEALLDGLAEDAVDFRDNYDGTLREPVVLPASFPNLLANGSSGIA 181 Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244 VGMAT+IP HN+ E+ +A L LI +P+ + LL+YI GPDFPTGG+IVE ESI ++Y Sbjct: 182 VGMATNIPPHNIAELIDACLHLIKSPDARDDTLLQYIPGPDFPTGGVIVEPPESIAQAYL 241 Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304 GRG FR+R +W +E++GRG W IVVTEIPYQVQKS+LIE+IAELI +++P+L D+RDE Sbjct: 242 TGRGAFRLRCKWELEDLGRGQWQIVVTEIPYQVQKSKLIERIAELIQTRKVPILADVRDE 301 Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364 SA+DVR+VL P+++++DP++LM ++ S++E RF LNMNVL G P+V L +L+ + Sbjct: 302 SADDVRLVLEPRSKNVDPEVLMGMMYRNSELEVRFSLNMNVLIDGVTPKVCSLKEVLRAF 361 Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---------- 414 L R++VL RRS RM+ ID R+E+L+GL+IA+LN+D +I IIR ++ PK Sbjct: 362 LDFRQQVLLRRSVHRMEKIDHRLEVLEGLIIAFLNLDRVIDIIRYDEDPKAALMREDWGR 421 Query: 415 -------------PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKI 461 P + LTE Q +AILN+RLRSLR+LEE ++++E D L+AE+ + Sbjct: 422 TVPRAMSEADYVPPPPTAEAGLTEVQAEAILNMRLRSLRRLEEMELRAERDTLMAERAGL 481 Query: 462 DSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPIT 521 + LL+ QW +A +++EVK+ F K+ +G RRT F E + L +AMI++EPIT Sbjct: 482 EDLLDDVSLQWAAVADQLKEVKKTFGKTHPIGARRTQFAEAGSVEDVPL-EAMIDREPIT 540 Query: 522 VVISNRGWIRSLKSHSVDLS-ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL 580 VV S GWIR++ H +DLS L FK+GD + HA TTDRIL+ ++G+ YTL A NL Sbjct: 541 VVCSQMGWIRAMTGH-LDLSRELKFKDGDGPRFMFHAETTDRILVFGSNGRFYTLSASNL 599 Query: 581 LSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKT 640 GRG GE ++L++DL + IV ++ KLLV S G+ FIV E E+IA TR GK Sbjct: 600 PGGRGMGEPLRLMVDLPNEAGIVDLLIHKPGRKLLVASDAGDGFIVPEEEVIAQTRSGKQ 659 Query: 641 FLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDV 700 L + + + VTGDHVA VG+NRK+L+F++D++PE+ RGKGVRLQ YKDGG+SD Sbjct: 660 VLNLKEPARALVCRPVTGDHVACVGDNRKVLVFALDELPELGRGKGVRLQKYKDGGLSDA 719 Query: 701 ICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750 F + GLTW D AGR+ R+E++L WLGKR G G + P+GFPR +F Sbjct: 720 TTFDLAAGLTWRDPAGRT--RTESNLEEWLGKRAGSGRMAPRGFPRDNRF 767 >gi|146278585|ref|YP_001168744.1| DNA topoisomerase IV subunit A [Rhodobacter sphaeroides ATCC 17025] gi|145556826|gb|ABP71439.1| DNA topoisomerase IV subunit A [Rhodobacter sphaeroides ATCC 17025] Length = 767 Score = 808 bits (2088), Expect = 0.0, Method: Compositional matrix adjust. Identities = 391/751 (52%), Positives = 528/751 (70%), Gaps = 25/751 (3%) Query: 22 LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81 LR A+ ERYL YALSTI RA+PD RDG KPVHRRI+ AM E+ L F+KSA+I G+ Sbjct: 19 LRRAIGERYLTYALSTIMHRALPDARDGLKPVHRRILFAMRELRLSPTGGFRKSAKIAGD 78 Query: 82 VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE 141 V+G HPHGD ++YD++ RLAQ F RYPL+ GQGNFGNIDGD+ AA RYTEAR+T +AE Sbjct: 79 VMGNYHPHGDAAIYDAMARLAQDFNVRYPLVDGQGNFGNIDGDNPAASRYTEARLTPIAE 138 Query: 142 LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICE 201 L+++G+ E+AVDFR Y+ EPVV P+ FP+LLANG SGIAVGMAT+IP HN+ E+ E Sbjct: 139 LLMEGLAENAVDFRPNYDGTLEEPVVMPAAFPHLLANGASGIAVGMATNIPPHNLDELIE 198 Query: 202 AALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEV 261 LA+I +P I+ E L+ I GPDFPTGG+IVE +ESI+E YR GRG FR+RA+W E++ Sbjct: 199 GCLAMIRHPAIADEALVGLIPGPDFPTGGVIVEPKESILEGYRTGRGAFRLRAKWQTEDL 258 Query: 262 GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLD 321 GRG+W IVVTEIPYQVQKS+LIE++AELI K++P L D+RDESA+DVRIVL P+ R++D Sbjct: 259 GRGTWQIVVTEIPYQVQKSKLIERLAELIQTKKVPALADVRDESADDVRIVLEPRARTVD 318 Query: 322 PDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQ 381 P++LM +F SD+E RF +NMNVL GR P+V L +L+ +L HRREVL RRS RM+ Sbjct: 319 PEMLMGMLFRNSDLEVRFSMNMNVLIDGRTPKVCSLKEVLRAFLDHRREVLIRRSEHRME 378 Query: 382 AIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS-----RFS-------------- 422 ID R+E+L GL++A+LN+D +I IIR +++PK +++ +F Sbjct: 379 KIDHRLEVLGGLIVAFLNLDRVIDIIRYDEEPKRALMAETWGRKFKRATSEKDYVGPGAG 438 Query: 423 ---LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479 LTE Q +AILN+RLRSLR+LEE ++ +E D L AE+ + L+ S +QW +I ++ Sbjct: 439 PGELTEVQAEAILNMRLRSLRRLEEMELLAERDALTAERADLADLVGSEPRQWERIGADL 498 Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539 E++++F K T G RRT F E ++ L +AMIE+EPITV+ S GWIR++K H Sbjct: 499 GEIRKLFGKWTVAGARRTQFAEAGEVEEVPL-EAMIEREPITVICSKMGWIRAMKGHQPL 557 Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHN 599 S + FK+GD + HA TTDR+LL+ ++G+ YTL +L GRG GE ++L++DL + Sbjct: 558 GSEVKFKDGDGPRFMFHAETTDRLLLVGSNGRFYTLTGASLPGGRGMGEPVRLMVDLPNE 617 Query: 600 QDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD 659 +I ++ KLL+ SS G+ F+V E++A TR GK L + + + GD Sbjct: 618 AEIADLIIWRPGEKLLLASSAGDGFVVPSEEVLAQTRAGKAVLSMKDGVTTAVCRPIRGD 677 Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719 HVAVVG+NRKLL+F + ++PEM+RGKGVRLQ YKDGG+SD I F++ GL+W D AGR+ Sbjct: 678 HVAVVGQNRKLLVFPLSELPEMARGKGVRLQKYKDGGLSDAITFELARGLSWKDPAGRT- 736 Query: 720 NRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750 R+E DL W G R G G + P+GFPR +F Sbjct: 737 -RTETDLAEWTGARAGAGKMAPRGFPRDNRF 766 >gi|294675703|ref|YP_003576318.1| DNA topoisomerase IV subunit A [Rhodobacter capsulatus SB 1003] gi|294474523|gb|ADE83911.1| DNA topoisomerase IV, A subunit [Rhodobacter capsulatus SB 1003] Length = 767 Score = 808 bits (2088), Expect = 0.0, Method: Compositional matrix adjust. Identities = 386/755 (51%), Positives = 535/755 (70%), Gaps = 12/755 (1%) Query: 5 NISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEM 64 +S+ + A L A+ ERYL YALSTI RA+PD RDG KPVHRRI+ AM E+ Sbjct: 15 TMSSDDETPTSATHAEPLSRAIGERYLTYALSTIMHRALPDARDGLKPVHRRILFAMREL 74 Query: 65 GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124 L F+KSA+I G+V+G HPHGD ++YD++ RLAQ F RYPL+ GQGN+GNIDGD Sbjct: 75 KLSSTGGFRKSAKISGDVMGNYHPHGDAAIYDAMARLAQDFAMRYPLVDGQGNYGNIDGD 134 Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184 AA RYTEAR+ AE +L+G+ ED+VDFR Y+ +EPVV P+ FPNLLANG SGIA Sbjct: 135 GPAASRYTEARLASPAEALLEGLAEDSVDFRPNYDGTLTEPVVLPAAFPNLLANGASGIA 194 Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244 VGMAT++P HN+ E+ + LA+I +P I +L++ I GPDFPTGG+IVE + +I+E+YR Sbjct: 195 VGMATNVPPHNLDELVDGCLAMIADPAIEEARLVDLIPGPDFPTGGVIVEPKANILEAYR 254 Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304 GRG FR+RARW +E++GRG W IVVTEIPYQVQK++LIE++AELI K++P L D+RDE Sbjct: 255 TGRGAFRLRARWALEDLGRGQWQIVVTEIPYQVQKAKLIERLAELIETKKVPALADVRDE 314 Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364 SAEDVRIVL P+ R+++P LM +F S++E RF LNMNVL GRVP+V L +L+ + Sbjct: 315 SAEDVRIVLEPRARTVEPAQLMGMLFRNSELEVRFSLNMNVLIDGRVPKVCSLKEVLRAF 374 Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR---- 420 L HRREVL RRS R++ I R+E+L+G +IA+LN+D +I IIR ED PK +++ Sbjct: 375 LDHRREVLCRRSRHRLEKIANRLEVLEGYIIAFLNLDRVIEIIRTEDDPKAALMAENWAA 434 Query: 421 -----FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQI 475 LTE Q +AILN+RLRSLR+LEE ++++E D+LL E+ +++LL S QW QI Sbjct: 435 EAGAVVHLTEVQAEAILNMRLRSLRRLEEMELRAERDDLLKERAGLEALLASEVAQWAQI 494 Query: 476 ACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKS 535 + E+ ++++ + K+T +G RRT F E ++ + +AMIE+EPITV++S GW+R++K Sbjct: 495 SSELEDLRKTWGKATKIGARRTDFAEAGEVEEVPI-EAMIEREPITVILSKMGWVRAMKG 553 Query: 536 HSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLID 595 H + + FK+GD ALHA TTDRI+L+ ++G+A+TL NL GRG GE ++L+++ Sbjct: 554 HQPLDAEVKFKDGDGQAFALHAETTDRIVLMGSNGRAWTLLGANLPGGRGMGEPVRLMLE 613 Query: 596 LNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655 + + ++ V K L+ SS+G+ FI E+IA+TR GK L +S + ++ Sbjct: 614 MPNEVEVTHVLVPKPGEKYLLASSEGDGFIAPAEELIASTRTGKQVLNMSDGVRTRVCRV 673 Query: 656 VTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSA 715 +GD VA VGENRKLL+F ++++PEM+RGKGVRLQ +KDGG+SD I F++ EGL+W D A Sbjct: 674 ASGDAVACVGENRKLLVFPLEELPEMARGKGVRLQKFKDGGLSDAITFRLAEGLSWKDPA 733 Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750 GR+ R+E DL WLGKR G + P+GFPR +F Sbjct: 734 GRT--RTEADLSEWLGKRASAGRMAPRGFPRDNRF 766 >gi|77462241|ref|YP_351745.1| DNA topoisomerase IV subunit A [Rhodobacter sphaeroides 2.4.1] gi|77386659|gb|ABA77844.1| DNA topoisomerase IV subunit A [Rhodobacter sphaeroides 2.4.1] Length = 767 Score = 808 bits (2087), Expect = 0.0, Method: Compositional matrix adjust. Identities = 393/751 (52%), Positives = 529/751 (70%), Gaps = 25/751 (3%) Query: 22 LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81 LR A+ ERYL YALSTI RA+PD RDG KPVHRRI+ AM E+ L F+KSA+I G+ Sbjct: 19 LRRAIGERYLTYALSTIMHRALPDARDGLKPVHRRILFAMRELRLSPTGGFRKSAKIAGD 78 Query: 82 VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE 141 V+G HPHGD ++YD++ RLAQ F RYPL+ GQGNFGNIDGD+ AA RYTEAR+T +AE Sbjct: 79 VMGNYHPHGDAAIYDAMARLAQDFNVRYPLVDGQGNFGNIDGDNPAASRYTEARLTPIAE 138 Query: 142 LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICE 201 L+++G+ E+AVDFR Y+ EPVV P+ FPNLLANG SGIAVGMAT+IP HN+ E+ E Sbjct: 139 LLMEGLAENAVDFRPNYDGTLEEPVVMPAAFPNLLANGASGIAVGMATNIPPHNLDELIE 198 Query: 202 AALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEV 261 LALI +P I+ + L+ I GPDFPTGG+IVE +E I+E+YR GRG FR+RA+W E++ Sbjct: 199 GCLALIRDPAIADDTLVSLIPGPDFPTGGVIVEPKEQILEAYRTGRGAFRLRAKWQTEDL 258 Query: 262 GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLD 321 GRG+W IVVTEIPYQVQKS+LIE++AELI K++P L D+RDESA+DVRIVL P+ R++D Sbjct: 259 GRGTWQIVVTEIPYQVQKSKLIERLAELIQTKKVPALADVRDESADDVRIVLEPRARTVD 318 Query: 322 PDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQ 381 P++LM +F SD+E RF LNMNVL GR P+V L +L+ +L HRR VL RRS RM+ Sbjct: 319 PEMLMGMLFRNSDLEIRFSLNMNVLIDGRTPRVCSLKEVLRAFLDHRRNVLIRRSQHRME 378 Query: 382 AIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS-----RFS-------------- 422 ID R+E+L GL++A+LN+D +I IIR + PK +++ RF Sbjct: 379 KIDHRLEVLGGLIVAFLNLDRVIDIIRYDADPKRALMAESWGRRFKRANSEKDYVGPGPG 438 Query: 423 ---LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479 L+E Q +AILN+RLRSLR+LEE ++ +E D LLAE+ +++L+ S + QW++I ++ Sbjct: 439 PGDLSEVQAEAILNMRLRSLRRLEEMELLAERDALLAERADLEALIGSERLQWDRIGHDL 498 Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539 E++++F K T G RRT F E ++ L +AMIE+EPITV+ S GWIR++K H Sbjct: 499 GEIRKLFGKWTVAGARRTQFAEAGEVEEVPL-EAMIEREPITVICSQMGWIRAMKGHQPL 557 Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHN 599 + FK+GD + HA TTDR+LL+ ++G+ YTL +L GRG GE ++L++DL + Sbjct: 558 DTEAKFKDGDGPRFLFHAETTDRLLLVGSNGRFYTLTGASLPGGRGMGEPVRLMVDLPNE 617 Query: 600 QDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD 659 +I FV+ KLL+ SS G+ F+V E++A TR GK L + + + V GD Sbjct: 618 AEIHDIFVWRPAEKLLLASSAGDGFVVPSEEVLAQTRAGKAVLSMKEGVRTAVCRPVRGD 677 Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719 HVAVVGENRKLL+F + ++PEM++GKGVRLQ YKDGG+SD I F+I GL+W D AGR+ Sbjct: 678 HVAVVGENRKLLVFPVSELPEMAKGKGVRLQKYKDGGLSDAITFEIARGLSWKDPAGRT- 736 Query: 720 NRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750 R+E +L W R G G + P+GFPR +F Sbjct: 737 -RTETELAEWTAARAGAGKMAPRGFPRDNRF 766 >gi|126461103|ref|YP_001042217.1| DNA topoisomerase IV subunit A [Rhodobacter sphaeroides ATCC 17029] gi|126102767|gb|ABN75445.1| DNA topoisomerase IV subunit A [Rhodobacter sphaeroides ATCC 17029] Length = 767 Score = 808 bits (2087), Expect = 0.0, Method: Compositional matrix adjust. Identities = 392/751 (52%), Positives = 530/751 (70%), Gaps = 25/751 (3%) Query: 22 LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81 LR A+ ERYL YALSTI RA+PD RDG KPVHRRI+ AM E+ L F+KSA+I G+ Sbjct: 19 LRRAIGERYLTYALSTIMHRALPDARDGLKPVHRRILFAMRELRLSPTGGFRKSAKIAGD 78 Query: 82 VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE 141 V+G HPHGD ++YD++ RLAQ F RYPL+ GQGNFGNIDGD+ AA RYTEAR+T +AE Sbjct: 79 VMGNYHPHGDAAIYDAMARLAQDFNVRYPLVDGQGNFGNIDGDNPAASRYTEARLTPIAE 138 Query: 142 LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICE 201 L+++G+ E+AVDFR Y+ EPVV P+ FPNLLANG SGIAVGMAT+IP HN+ E+ E Sbjct: 139 LLMEGLAENAVDFRPNYDGTLEEPVVMPAAFPNLLANGASGIAVGMATNIPPHNLDELIE 198 Query: 202 AALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEV 261 LALI +P I+ + L+ I GPDFPTGG+IVE +E I+E+YR GRG FR+RA+W E++ Sbjct: 199 GCLALIRDPAIADDTLVSLIPGPDFPTGGVIVEPKEQILEAYRTGRGAFRLRAKWQTEDL 258 Query: 262 GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLD 321 GRG+W IVVTEIPYQVQKS+LIE++AELI K++P L D+RDESA+DVRIVL P+ R++D Sbjct: 259 GRGTWQIVVTEIPYQVQKSKLIERLAELIQTKKVPALADVRDESADDVRIVLEPRARTVD 318 Query: 322 PDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQ 381 P++LM +F SD+E RF LNMNVL GR P+V L +L+ +L HRR+VL RRS RM+ Sbjct: 319 PEMLMGMLFRNSDLEIRFSLNMNVLIDGRTPRVCSLKEVLRAFLDHRRDVLIRRSQHRME 378 Query: 382 AIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS-----RFS-------------- 422 ID R+E+L GL++A+LN+D +I IIR + PK +++ +F Sbjct: 379 KIDHRLEVLGGLIVAFLNLDRVIDIIRYDADPKRALMAESWGRKFKRANSEKDYVGPGPG 438 Query: 423 ---LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479 L+E Q +AILN+RLRSLR+LEE ++ +E D LLAE+ +++L+ S + QW++I ++ Sbjct: 439 PGDLSEVQAEAILNMRLRSLRRLEEMELLAERDALLAERADLEALIGSERLQWDRIGHDL 498 Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539 E++++F K T G RRT F E ++ L +AMIE+EPITV+ S GWIR++K H Sbjct: 499 GEIRKLFGKWTVAGARRTQFAEAGEVEEVPL-EAMIEREPITVICSQMGWIRAMKGHQPL 557 Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHN 599 + FK+GD + HA TTDR+LL+ ++G+ YTL +L GRG GE ++L++DL + Sbjct: 558 DTEAKFKDGDGPRFLFHAETTDRLLLVGSNGRFYTLTGASLPGGRGMGEPVRLMVDLPNE 617 Query: 600 QDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD 659 +I FV+ KLL+ SS G+ F+V E++A TR GK L + + + V GD Sbjct: 618 AEIHDIFVWRPAEKLLLASSAGDGFVVPSEEVLAQTRAGKAVLSMKEGVRTAVCRPVRGD 677 Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719 HVAVVGENRKLL+F + ++PEM++GKGVRLQ YKDGG+SD I F+I GL+W D AGR+ Sbjct: 678 HVAVVGENRKLLVFPVSELPEMAKGKGVRLQKYKDGGLSDAITFEIARGLSWKDPAGRT- 736 Query: 720 NRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750 R+E +L W R G G + P+GFPR +F Sbjct: 737 -RTETELAEWTAARAGAGKMAPRGFPRDNRF 766 >gi|254487742|ref|ZP_05100947.1| DNA topoisomerase IV, A subunit [Roseobacter sp. GAI101] gi|214044611|gb|EEB85249.1| DNA topoisomerase IV, A subunit [Roseobacter sp. GAI101] Length = 773 Score = 808 bits (2086), Expect = 0.0, Method: Compositional matrix adjust. Identities = 399/775 (51%), Positives = 542/775 (69%), Gaps = 34/775 (4%) Query: 5 NISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEM 64 +I++ + L NV LR AL +RYL YALSTI RA+PD RDG KPVHRRI++AM E+ Sbjct: 3 DITDPSDLDPRNVSE-PLRLALGDRYLTYALSTIMHRALPDARDGLKPVHRRILYAMREL 61 Query: 65 GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124 L F+KSA+I G+V+G HPHGD ++YD++ RLAQ F RYPL+ GQGNFGNIDGD Sbjct: 62 RLSSTGGFRKSAKISGDVMGNYHPHGDAAIYDAMARLAQDFNVRYPLVDGQGNFGNIDGD 121 Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184 + AA RYTEARMT VAE +L+G++E+AVDFR+ Y+ +EPVV P++FPNLLANG+SGIA Sbjct: 122 NPAASRYTEARMTAVAEAMLEGLNENAVDFRENYDGTLTEPVVLPAQFPNLLANGSSGIA 181 Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244 VGMAT+IP HN+ E+ +A + LI PE + LL ++ GPDFPTGGIIVE E+I +YR Sbjct: 182 VGMATNIPPHNISELVDACIHLIKTPEARDDTLLNFVPGPDFPTGGIIVEPPENIANAYR 241 Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304 G+GGFR+R RW VE++GRG W IV+TEIPYQVQKS+LIEKIAELI K+IP+L D+RDE Sbjct: 242 TGKGGFRLRCRWNVEDLGRGVWQIVITEIPYQVQKSKLIEKIAELIQLKKIPILGDVRDE 301 Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364 SAED+R+++ P+++++DP++LM ++ SD+E RF LNMNVL G P+V + +L+ + Sbjct: 302 SAEDIRLIIEPRSKNVDPEVLMGMLYRSSDLEVRFSLNMNVLIDGLTPKVCSMKEVLRAF 361 Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---------- 414 L HRREVL RRS+ R++ ID R+E+L+G +IA+LN+D +I IIR + PK Sbjct: 362 LDHRREVLQRRSAHRLEKIDHRLEVLEGFIIAFLNLDRVIDIIRYDADPKAALMAEDWGK 421 Query: 415 -------------PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKI 461 P + SLTE Q DAILN+RLRSLR+LEE ++ E L+AE+ + Sbjct: 422 KHSRATDESDYVPPAPTTENSLTEIQADAILNMRLRSLRRLEEMELLREQSELMAERAGL 481 Query: 462 DSLLNSGKQQWNQIACEIREVKEIFSK-----STDLGRRRTTFCEVSRADKATLQQAMIE 516 + LL+S QW+ I ++R K+ F K ++G RRTTF E + L +AMI+ Sbjct: 482 EDLLDSEALQWDSIIEQLRATKKQFGKDWKLDGVNVGLRRTTFAEAGEIEDVPL-EAMID 540 Query: 517 KEPITVVISNRGWIRSLKSHSVDLS-ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575 +EPITVV S GWIR++ H +DL+ L FK+GD + HA TTDR+L+ ++G+ YT+ Sbjct: 541 REPITVVCSEMGWIRAMTGH-IDLNRELKFKDGDGPRFVFHAETTDRLLVFGSNGRFYTI 599 Query: 576 PAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANT 635 A +L GRG GE ++L++DL ++ IV F++ KLLV SS G+ F+V E E++A T Sbjct: 600 GAVSLPGGRGMGEPLRLMVDLPNDVQIVDIFIHKPGRKLLVASSAGDGFVVPEDEVLAQT 659 Query: 636 RKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDG 695 R GK L V + K + + G+ VAVVGENRK+L+F +D++PEM RGKGVRLQ YKDG Sbjct: 660 RSGKQVLNVRGDAKAMICAPIKGEAVAVVGENRKVLVFGLDELPEMGRGKGVRLQKYKDG 719 Query: 696 GISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750 G+SD F + EGL+W+D AGR+ R+E+DL W GKR G + P+GFPR +F Sbjct: 720 GMSDATTFTLSEGLSWLDPAGRT--RTESDLTEWTGKRASAGRMAPRGFPRDNRF 772 >gi|159042777|ref|YP_001531571.1| DNA topoisomerase IV subunit A [Dinoroseobacter shibae DFL 12] gi|157910537|gb|ABV91970.1| DNA topoisomerase IV, A subunit [Dinoroseobacter shibae DFL 12] Length = 777 Score = 807 bits (2084), Expect = 0.0, Method: Compositional matrix adjust. Identities = 393/751 (52%), Positives = 524/751 (69%), Gaps = 23/751 (3%) Query: 22 LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81 LR A+ RYL YALSTI RA+PD RDG KPVHRRI++AM E+ L F+KSA+I G+ Sbjct: 27 LRRAIGARYLQYALSTIMHRALPDARDGLKPVHRRILYAMRELRLSATGGFRKSAKISGD 86 Query: 82 VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE 141 V+G HPHGD ++YD++ RLAQ F RYPL+ GQGNFGNIDGD+ AA RYTEAR+T AE Sbjct: 87 VMGNYHPHGDAAIYDAMARLAQDFNVRYPLVDGQGNFGNIDGDNPAASRYTEARLTAAAE 146 Query: 142 LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICE 201 +++G+ E+AVDFRD Y+ +EP V P+ FPNLLANG+SGIAVGMAT+IP HN+ E+ + Sbjct: 147 ALMEGLAENAVDFRDNYDGTLTEPEVLPAAFPNLLANGSSGIAVGMATNIPPHNLHELID 206 Query: 202 AALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEV 261 L LI P E LLE I GPDFPTGG+IVE +ESI ++Y GRG FR+RARW E++ Sbjct: 207 GCLHLIRAPNARDETLLEMIPGPDFPTGGVIVEPKESIAQAYATGRGAFRLRARWAREDL 266 Query: 262 GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLD 321 GRG W IV+TEIPYQVQKS+LIEKIA+LI K++P+L DIRDESA+DVRI+L P+++++D Sbjct: 267 GRGQWQIVITEIPYQVQKSKLIEKIADLIQTKKVPILADIRDESADDVRIILEPRSKNVD 326 Query: 322 PDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQ 381 P++LM ++F LS++ETRF LNMNVL GR P+V L +L+ +L HRR+VL RRS R+ Sbjct: 327 PEVLMGTLFRLSELETRFSLNMNVLIDGRTPKVCSLREVLRAFLDHRRDVLGRRSRHRLA 386 Query: 382 AIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV----------------------S 419 ID R+E+L+G L+A+LN+D +I IIR ++ PK ++ Sbjct: 387 KIDHRLEVLEGFLVAFLNLDRVIDIIRYDEDPKAALMREDWSLKHVRATDEADYKTPAPG 446 Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479 LTE Q +AILN+RLRSLR+LEE ++ SE D L+AE+ +++ LL QW +IA E+ Sbjct: 447 EGELTEVQAEAILNMRLRSLRRLEEMELISERDALMAERAELEDLLADEALQWARIADEL 506 Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539 REV++ F K T LG+RRT F + + +L+ MIE+EPITVV S GWIR++K H Sbjct: 507 REVRKQFGKGTALGKRRTDFAVATEMAEVSLED-MIEREPITVVCSKMGWIRAMKGHVAL 565 Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHN 599 AL FK+GD + HA TTD++L +G+ YTL L GRG GE I+L++DL + Sbjct: 566 DQALKFKDGDEGRFIFHAETTDKLLAFGANGRFYTLSCAALPGGRGMGEPIRLMVDLPNE 625 Query: 600 QDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD 659 ++V F++ +L+V S G+ FIV E+E++A TR GK L V S + L V GD Sbjct: 626 AELVDLFLHVPGRRLIVASDAGDGFIVPETEVLAQTRTGKQVLNVKSPHRALLARPVAGD 685 Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719 +A VGENRKLL+F+ D++PEM RGKGVRLQ YKDGG+SD+ F +GL W+D+ GR+ Sbjct: 686 AIAAVGENRKLLVFAADELPEMGRGKGVRLQKYKDGGLSDLRSFDRAQGLQWLDAGGRTR 745 Query: 720 NRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750 ++ +L W GKR G G + P+GFPR KF Sbjct: 746 TVADPELAEWSGKRAGTGRMAPRGFPRDNKF 776 >gi|84515184|ref|ZP_01002547.1| DNA topoisomerase IV subunit A [Loktanella vestfoldensis SKA53] gi|84511343|gb|EAQ07797.1| DNA topoisomerase IV subunit A [Loktanella vestfoldensis SKA53] Length = 767 Score = 806 bits (2081), Expect = 0.0, Method: Compositional matrix adjust. Identities = 396/756 (52%), Positives = 536/756 (70%), Gaps = 32/756 (4%) Query: 21 SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVG 80 SLR A+ +RYL YALSTI RA+PD RDG KPVHRRI++AMS + L F KSA+I G Sbjct: 17 SLRSAIGDRYLTYALSTIMHRALPDARDGLKPVHRRILYAMSRLRLSPTGGFLKSAKISG 76 Query: 81 EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVA 140 + +G HPHGD ++YD++ RLAQ F RYPL+ GQGNFGNIDGD+ AA RYTEARMT A Sbjct: 77 DTMGDFHPHGDAAIYDAMARLAQDFNVRYPLVDGQGNFGNIDGDNPAASRYTEARMTAAA 136 Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200 E +L+G+ EDAVDFRD Y+ +EP V P+ FPNLLANG+SGIAVGMAT+IP HN+ E+ Sbjct: 137 EALLEGLSEDAVDFRDNYDGRLTEPSVLPASFPNLLANGSSGIAVGMATNIPPHNLHELI 196 Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEE 260 +A L LI +P + + LL +I+GPDFPTGG+IVE E++ E+YR GRG FR+RA+W VE+ Sbjct: 197 DACLHLIKSPGAADDSLLTHILGPDFPTGGVIVEPPENMAEAYRTGRGSFRLRAKWEVED 256 Query: 261 VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSL 320 +GRG W IVVTEIPYQVQKS+LIEK+AE+I K++PLL D+RDESAEDVR+VL P+ RS+ Sbjct: 257 LGRGQWQIVVTEIPYQVQKSKLIEKLAEVIQTKKVPLLADVRDESAEDVRVVLEPRARSV 316 Query: 321 DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRM 380 DP++LM +F SD+E RF LNMNVL G P+V L +L+ +L HRR+VL RRS R+ Sbjct: 317 DPEMLMGMLFRNSDLEIRFSLNMNVLIDGLTPKVCSLKEVLRAFLDHRRDVLVRRSRHRL 376 Query: 381 QAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS--------------------- 419 ID R+E+L+G +IA+L++D +I IIR +D PK +++ Sbjct: 377 GKIDHRLEVLEGFIIAFLHLDRVIDIIRYDDDPKSALMAEDWAHPHIRATSEKDYVGPKA 436 Query: 420 ---RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476 +LTE Q +AILN+RLRSLR+LEE ++ +E D L AE++ I +LL QW +IA Sbjct: 437 TDPEIALTEVQAEAILNMRLRSLRRLEELELIAERDALRAERQGIMALLADEALQWARIA 496 Query: 477 CEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSLKS 535 E+RE ++ F +++ G RRT F AD A + +AMI++EPITVV S GW+R++ Sbjct: 497 DELRETRKQFGRTSPGGARRTQFALA--ADVAYVPIEAMIDREPITVVCSQMGWVRAMTG 554 Query: 536 HSVDLSA-LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLI 594 H +DL+ L FK+GD+ + HA TTD++L+ +G+ YT+ A NL GRG GE ++L+I Sbjct: 555 H-IDLTRDLKFKDGDAARFTFHAETTDKLLVFGANGRFYTVSAANLPGGRGMGEPLRLMI 613 Query: 595 DLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654 DL + +I+ ++ KLLV S+ GN F+V E E++A TR GK L + + +L Sbjct: 614 DLPNEAEIIDILIHKPGEKLLVASTDGNGFVVPEVEVVAQTRAGKQVLNLGA-STARLCK 672 Query: 655 KVTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDS 714 ++ GDHVAVVGENRK+L+F ID++PEM+RGKGVRLQ YKDGG+SD F + +GLTW+D Sbjct: 673 RIAGDHVAVVGENRKVLVFGIDELPEMTRGKGVRLQKYKDGGLSDATTFTLADGLTWLDP 732 Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750 AGR+ R++++L W+GKR G + P+GFPR +F Sbjct: 733 AGRT--RTQSELDEWIGKRATAGRMAPRGFPRDNRF 766 >gi|209964783|ref|YP_002297698.1| DNA topoisomerase IV subunit A [Rhodospirillum centenum SW] gi|209958249|gb|ACI98885.1| DNA topoisomerase IV, A subunit, putative [Rhodospirillum centenum SW] Length = 757 Score = 805 bits (2079), Expect = 0.0, Method: Compositional matrix adjust. Identities = 398/743 (53%), Positives = 531/743 (71%), Gaps = 20/743 (2%) Query: 25 ALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIG 84 AL ERYL+YALSTI R++PD+RDG KPVHRR+++AMS++ L+ KKSAR+VG+VIG Sbjct: 16 ALGERYLSYALSTIVSRSLPDVRDGLKPVHRRLLYAMSQLRLEPTTPPKKSARVVGDVIG 75 Query: 85 KLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELIL 144 K HPHGDQSVYD+LVRLAQ F RYPL+ GQGNFGNIDGD+AAA RYTEAR+T+VA+ +L Sbjct: 76 KFHPHGDQSVYDALVRLAQEFAARYPLVEGQGNFGNIDGDNAAAMRYTEARLTEVAKAML 135 Query: 145 QGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAAL 204 G+DEDA DFR TY+ E EP+V P+ FPNLLANG++GIAVGMAT+IP HNV EIC AL Sbjct: 136 AGIDEDATDFRPTYDGEGEEPMVLPAAFPNLLANGSAGIAVGMATNIPPHNVGEIC-GAL 194 Query: 205 ALIDNPE----------ISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 LI E +++E+L+ +I GPDFPTGG++VESRE+I+E+YR GRG FR RA Sbjct: 195 NLIIERELLPAPDKRRPVTVEELVSWIPGPDFPTGGVLVESRENILEAYRTGRGAFRTRA 254 Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314 RW E + +G+W I+VT+IPYQVQKSRL+EKIAEL+ K++PLLED+RDESAED+R+VL Sbjct: 255 RWQKEPLAQGTWQIIVTQIPYQVQKSRLVEKIAELLAEKKLPLLEDVRDESAEDIRLVLV 314 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSM---GRVPQVMPLDGILKEWLAHRREV 371 PK+R++DPD++ME +F +D+ETRF +NMNVL G VP+VM L +L+ +L HR+EV Sbjct: 315 PKSRNVDPDVMMEQMFRNTDLETRFSMNMNVLDAREGGLVPRVMTLYEVLRAFLEHRQEV 374 Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431 L RRS R+ ID R+E+L G LIAYLNIDE+I IIR ED+PK +++RFSLT+ Q +AI Sbjct: 375 LLRRSRHRLGEIDHRLEVLGGYLIAYLNIDEVIRIIREEDEPKRELMARFSLTDVQAEAI 434 Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491 LN+RLRSLRKLEE++I+ E D L E+ + LL G ++W I+ E+ E+ F ++T Sbjct: 435 LNMRLRSLRKLEEFEIRKENDALTKERGVLVGLLEDGHKRWKAISKEVAEMDRKFGRTTA 494 Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSH--SVDLSALHFKEGD 549 LG RRT E + D A +AMIE+EP+TV +S +GWIR+++ H + +++ +K+GD Sbjct: 495 LGERRTLIGEPPK-DLAVPAEAMIEREPVTVFLSEKGWIRTVRGHQSAQEVAGTKYKDGD 553 Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609 + LHA TTDR+LL + GK YTL L GRG GE ++L++DL + IV + Sbjct: 554 RERFVLHAETTDRLLLFAGSGKFYTLGVDRLPGGRGFGEPVRLMVDLGEAE-IVALLRHQ 612 Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRK 669 +L+V S+ G F VE +++A TR GK L + L V GD VAV+G NRK Sbjct: 613 PGQRLVVASADGRGFQVEADDVVAQTRAGKQVLTPADGAAAVLAVPAEGDAVAVIGNNRK 672 Query: 670 LLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSEN--DLL 727 LL+F ++++P M+RGKGV+LQ YKD +SD+ F + EGL+W R+ DL Sbjct: 673 LLVFKLEELPVMTRGKGVQLQKYKDASLSDLKVFALAEGLSWRMGGSGEKTRTVTLPDLQ 732 Query: 728 GWLGKRGGVGSLVPKGFPRSGKF 750 GW+ RG G L P GFP+ +F Sbjct: 733 GWIAYRGTQGKLPPNGFPKDNRF 755 >gi|126724334|ref|ZP_01740177.1| DNA topoisomerase IV subunit A [Rhodobacterales bacterium HTCC2150] gi|126705498|gb|EBA04588.1| DNA topoisomerase IV subunit A [Rhodobacterales bacterium HTCC2150] Length = 769 Score = 803 bits (2075), Expect = 0.0, Method: Compositional matrix adjust. Identities = 390/772 (50%), Positives = 534/772 (69%), Gaps = 32/772 (4%) Query: 3 VDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62 +D + T + E LR AL +RYL YALSTI RA+PD RDG KPVHRRI++AM+ Sbjct: 5 IDPVDTPETEITE-----PLRRALGDRYLTYALSTIMHRALPDARDGLKPVHRRILYAMN 59 Query: 63 EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122 + L F KSA+I G+ +G HPHGD ++YD++ RLAQ F RYPL+ GQGNFGNID Sbjct: 60 RLRLSASGGFLKSAKISGDTMGDFHPHGDAAIYDAMARLAQDFNVRYPLVDGQGNFGNID 119 Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182 GD+ AA RYTEARMT VAE +L+G+ E+AVD+RD Y+ EPVV P+ FPNLLANG++G Sbjct: 120 GDNPAASRYTEARMTVVAEAMLEGLSENAVDYRDNYDGRLEEPVVLPASFPNLLANGSTG 179 Query: 183 IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242 IAVGMAT+IP HNV E+C+A L LI +P E LL+Y+ GPDFPTGG+IVE +E+I+E+ Sbjct: 180 IAVGMATNIPPHNVAELCDACLHLIKSPNARDETLLDYVPGPDFPTGGVIVEPKENILEA 239 Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302 YR GRG FR+R +W E++GRG W IVVTEIPYQVQKS+LIEK+AE+I K+IP+L D+R Sbjct: 240 YRTGRGSFRLRCKWETEDLGRGMWQIVVTEIPYQVQKSKLIEKLAEVIHLKKIPILGDVR 299 Query: 303 DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362 DESA+DVRI+L PK++++DPD+LM ++ SD+E RF LNMNVL G P+V L +L+ Sbjct: 300 DESADDVRIILEPKSKNVDPDVLMNMLYRSSDLEVRFSLNMNVLIDGLTPKVCSLKDVLR 359 Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV---- 418 ++ HR++VL RRS R+ ID R+E+L+G +IA+LN+D +I IIR +D PK ++ Sbjct: 360 AFIDHRQDVLKRRSQHRIDKIDHRLEVLEGFIIAFLNLDRVIDIIRYDDDPKAALMRENW 419 Query: 419 --------------------SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458 L+E Q +AILN+RLRSLR+LEE ++ E D L+ E+ Sbjct: 420 AQEFVRATSESDYRSPAVADDEGELSEVQAEAILNMRLRSLRRLEEMELVRERDALMEER 479 Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518 +D LL+ + QW +I+ ++RE ++ F K+ + G RR+ F E ++ + +AMIE+E Sbjct: 480 ANLDDLLSDERLQWAKISEQLRETRKTFGKNYEGGARRSQFAEAGEVEEVPI-EAMIERE 538 Query: 519 PITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAG 578 PITVV S GW+R+LK H+ S + FK+GD + HA TTDR+L+ ++G+ YTL A Sbjct: 539 PITVVCSKMGWVRALKGHADLTSKVKFKDGDEARFMFHAETTDRLLIFGSNGRFYTLGAN 598 Query: 579 NLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG 638 NL GRG GE ++L++DL + +IV ++ KLLV S+ G+ FIV E+++IA TR G Sbjct: 599 NLPGGRGMGEPLRLMVDLPNEAEIVDILIHQPDRKLLVASTAGDGFIVPENDVIAQTRSG 658 Query: 639 KTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGIS 698 K L V + ++ V GDH+A VGENRK+L F + ++PEM RGKGVRLQ YKDGG+S Sbjct: 659 KQVLNVKEGVRAFVLSPVKGDHLACVGENRKVLAFPLTELPEMGRGKGVRLQKYKDGGLS 718 Query: 699 DVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750 D F + +GL+W D AGR+ R+E +L W+GKR G + P+GFPR +F Sbjct: 719 DATFFTLADGLSWKDPAGRT--RTETELTEWMGKRASAGRMAPRGFPRDNRF 768 >gi|89053044|ref|YP_508495.1| DNA topoisomerase IV subunit A [Jannaschia sp. CCS1] gi|88862593|gb|ABD53470.1| DNA topoisomerase IV subunit A [Jannaschia sp. CCS1] Length = 775 Score = 803 bits (2075), Expect = 0.0, Method: Compositional matrix adjust. Identities = 399/754 (52%), Positives = 528/754 (70%), Gaps = 29/754 (3%) Query: 22 LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81 L A+ RYL YALSTI RA+PD RDG KPVHRRI++AM E+ L F+KSA+I G+ Sbjct: 25 LSRAIGSRYLQYALSTIMHRALPDARDGLKPVHRRILYAMRELRLASNGGFRKSAKISGD 84 Query: 82 VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE 141 V+G HPHGD ++YD++ RLAQ FV RYPL+ GQGNFGNIDGD+ AA RYTEARMT VAE Sbjct: 85 VMGNYHPHGDAAIYDAMARLAQDFVIRYPLVDGQGNFGNIDGDNPAAARYTEARMTAVAE 144 Query: 142 LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICE 201 +L+G+ EDAV+FRD Y+ EP V P++ PNLLANG+SGIAVGMAT+IP HN+ E+ Sbjct: 145 ALLEGLSEDAVNFRDNYDGTLQEPEVLPAQVPNLLANGSSGIAVGMATNIPPHNLDELIA 204 Query: 202 AALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEV 261 A L LI P+ E LL Y+ GPDFPTGG+IVE RES+ E+YR G+GGFRVRA +E++ Sbjct: 205 ACLHLIKTPDARDETLLNYVQGPDFPTGGVIVEPRESMAETYRTGKGGFRVRATHEIEDL 264 Query: 262 GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLD 321 GRG W IVVTEIPYQVQKS+LIEK+AELI K++P+L D+RDESA+D+RIVL P+++++D Sbjct: 265 GRGQWQIVVTEIPYQVQKSKLIEKLAELIQLKKMPILADVRDESADDIRIVLEPRSKTVD 324 Query: 322 PDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQ 381 PD+LM +++ SD+E RF LNMNVL GR P+V L +L+ +L HR++VL RRS RM Sbjct: 325 PDVLMAALYRQSDLENRFSLNMNVLIDGRTPKVCSLKEVLRAFLDHRQDVLMRRSRHRMA 384 Query: 382 AIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV----------------------S 419 ID R+E+L+G LIA+LN+D +I IIR +D PK ++ Sbjct: 385 QIDHRLEVLEGFLIAFLNLDRVIDIIRYDDSPKAALMREDWGQDFVRAMSEADYVSPKPG 444 Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479 LTE QV+AILN+RLRSLR+LEE ++++E D L+ E+ ++ LL QW +IA E+ Sbjct: 445 EGELTEVQVEAILNMRLRSLRRLEEMELQAERDRLMEERAGLEDLLAEESLQWGRIAEEL 504 Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539 REV++ F D G RRT F E ++ +L +AMIE+EP+T+V S GWIR++K H VD Sbjct: 505 REVRKKFGSRADGGARRTQFAEAGNIEEVSL-EAMIEREPVTIVCSQMGWIRAMKGH-VD 562 Query: 540 LSA-LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNH 598 LS + F++GD + A+HA TTD++L+L + G+ YTL A L GRG GE ++L++DL + Sbjct: 563 LSQEMKFRDGDGPRFAIHAETTDKLLILGSQGRVYTLGANGLPGGRGLGEPLRLMVDLPN 622 Query: 599 NQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT- 657 IV FV+ K L+ SS G+ F+V E +I+A TR GK L V + V Sbjct: 623 EVQIVDLFVHHPGAKRLMASSAGDGFLVAEEDILAQTRSGKQVLNVKDGVTASVCRAVAP 682 Query: 658 -GDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAG 716 DHVAVVGENRKLL+F + ++PEM RGKGVRLQ YKDGG+SD F++ +GL W+D AG Sbjct: 683 EDDHVAVVGENRKLLVFPLTELPEMGRGKGVRLQKYKDGGLSDARTFRLEDGLVWLDPAG 742 Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750 R+ R+E +L W KR G G + P+GFPR +F Sbjct: 743 RT--RTEVELGEWAAKRAGAGRMAPRGFPRDNQF 774 >gi|254453718|ref|ZP_05067155.1| DNA topoisomerase IV, A subunit [Octadecabacter antarcticus 238] gi|198268124|gb|EDY92394.1| DNA topoisomerase IV, A subunit [Octadecabacter antarcticus 238] Length = 803 Score = 801 bits (2070), Expect = 0.0, Method: Compositional matrix adjust. Identities = 390/778 (50%), Positives = 541/778 (69%), Gaps = 32/778 (4%) Query: 1 MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60 +G N + L + +LR AL +RYL YALSTI RA+PD RDG KPVHRRI++A Sbjct: 29 LGYTRSMNDDALDPKMNPTETLRRALGDRYLTYALSTIMHRALPDARDGLKPVHRRILYA 88 Query: 61 MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120 M E+ L F+KSA+I G+V+G HPHGD ++YD++ RLAQ F RYPL+ GQGNFGN Sbjct: 89 MRELKLASKGGFRKSAKISGDVMGNYHPHGDAAIYDAMARLAQDFNVRYPLVDGQGNFGN 148 Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180 IDGD+ AA RYTEARMT AE +L+G++E+AVDFR+ Y+ EPVV P+ FPNLLANG+ Sbjct: 149 IDGDNPAAARYTEARMTAAAEALLEGLNENAVDFRENYDGTLEEPVVLPAAFPNLLANGS 208 Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240 SGIAVGMAT+IP HN++E+ A L LI +P E LL+YI GPDFPTGG+IVE +E+I Sbjct: 209 SGIAVGMATNIPPHNLEELIGACLHLIKSPNARDETLLDYIPGPDFPTGGVIVEPKENIA 268 Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300 E+YR G+GGFR+R ++ VE++GRG W +++TEIPYQVQKSRLIEK+AE+I K++P+L D Sbjct: 269 EAYRTGKGGFRLRCKYEVEDLGRGQWQVIITEIPYQVQKSRLIEKLAEIIELKKVPILAD 328 Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360 +RDESAED+RIVL PK++++D ++LM ++ S++ETRF LNMNVL G P+V L + Sbjct: 329 VRDESAEDIRIVLEPKSKNVDVEVLMGMLYRNSELETRFSLNMNVLIDGLTPKVCSLKEV 388 Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS- 419 L+ +L HRR+VL RRS+ RM ID R+E+L+G +IA+LN+D +I IIR ++ PK +++ Sbjct: 389 LRAFLDHRRDVLIRRSTHRMVKIDHRLEVLEGFIIAFLNLDRVIDIIRYDNDPKKALMAE 448 Query: 420 --------------------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453 LT+ Q +AILN+RLRSLR+LEE ++ E D Sbjct: 449 DWGKTHARAMDEADYVSPLTGLVSEPEMGLTDVQAEAILNMRLRSLRRLEEIELVKERDA 508 Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513 L+ E+ ++ LL+S QW IA ++RE +++F +++ G RRT F + L +A Sbjct: 509 LMLERAGLEDLLDSEDLQWKTIADQLRETRKLFGSNSEGGARRTAFAVAGVVEDVPL-EA 567 Query: 514 MIEKEPITVVISNRGWIRSLKSHSVDLS-ALHFKEGDSLKIALHAHTTDRILLLSTDGKA 572 MI+KEP+TVV S GWIR+L H +DL+ L FK+GD + HA TTDR+L+ ++G+ Sbjct: 568 MIDKEPVTVVCSKMGWIRALTGH-IDLARELKFKDGDEGRFVFHAQTTDRLLVFGSNGRF 626 Query: 573 YTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEII 632 YT+ L GRG GE ++L++DL + +IV F++ + KLLV SS G+ F+V E ++I Sbjct: 627 YTMGTSTLPGGRGMGEPLRLMVDLPNEAEIVALFIHRAGNKLLVASSAGDGFVVPEDDVI 686 Query: 633 ANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSY 692 A TR GK L V + + ++ VTGD+VA VGENRK+L+F +D++PEM RGKGVRLQ Y Sbjct: 687 AQTRAGKQVLNVKGDVRARVCSTVTGDYVACVGENRKVLLFPLDELPEMGRGKGVRLQKY 746 Query: 693 KDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750 KDGG+SD F + +GL+W+D AGR+ R++ +L W KR G G + P+GFPR +F Sbjct: 747 KDGGLSDATTFTLADGLSWLDPAGRT--RTQTELAEWAAKRAGAGRMAPRGFPRDNRF 802 >gi|83941524|ref|ZP_00953986.1| DNA topoisomerase IV subunit A [Sulfitobacter sp. EE-36] gi|83847344|gb|EAP85219.1| DNA topoisomerase IV subunit A [Sulfitobacter sp. EE-36] Length = 775 Score = 798 bits (2062), Expect = 0.0, Method: Compositional matrix adjust. Identities = 392/758 (51%), Positives = 533/758 (70%), Gaps = 33/758 (4%) Query: 22 LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81 LR AL +RYL YALSTI RA+PD RDG KPVHRRI+ AM E+ L+ F+KSA+I G+ Sbjct: 21 LRRALGDRYLTYALSTIMHRALPDARDGLKPVHRRILFAMRELRLNSTGGFRKSAKISGD 80 Query: 82 VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE 141 V+G HPHGD ++YD++ RLAQ F RYPL+ GQGNFGNIDGD+ AA RYTEARMT VAE Sbjct: 81 VMGNYHPHGDAAIYDAMARLAQDFNVRYPLVDGQGNFGNIDGDNPAASRYTEARMTAVAE 140 Query: 142 LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICE 201 +L+G++E+AVDFR+ Y+ +EP V P++FPNLLANG+SGIAVGMAT+IP HN+ E+ + Sbjct: 141 AMLEGLNENAVDFRENYDGTLTEPAVLPAQFPNLLANGSSGIAVGMATNIPPHNISELVD 200 Query: 202 AALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEV 261 A + LI P+ + LL+Y+ GPDFPTGGIIVE E+I +YR G+GGFR+R RW E++ Sbjct: 201 ACIHLIKTPDARDDTLLKYVPGPDFPTGGIIVEPPENIANAYRTGKGGFRLRCRWETEDL 260 Query: 262 GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLD 321 GRG+W IV+TEIPYQVQKS+LIEKIAELI K+IP+L D+RDESA+D+R+++ P+++++D Sbjct: 261 GRGAWQIVITEIPYQVQKSKLIEKIAELIQTKKIPILGDVRDESADDIRLIIEPRSKNVD 320 Query: 322 PDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQ 381 P++LM ++ SD+E RF LNMNVL G P+V + +L+ +L HRREVL RRS++RM+ Sbjct: 321 PEVLMGMLYRSSDLEVRFSLNMNVLIDGVTPKVCSMKEVLRAFLDHRREVLQRRSTYRME 380 Query: 382 AIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK-----------------------PVMV 418 ID R+E+L+G ++A+LN+D +I IIR ++ PK P Sbjct: 381 KIDHRLEVLEGFIVAFLNLDRVIDIIRYDEDPKSALMAEDWGKDHVRAMDEASYVPPAPS 440 Query: 419 SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE 478 + SL+E Q DAILN+RLRSLR+LEE ++ E L+ E+ ++ LL + QW+ I + Sbjct: 441 AENSLSEVQADAILNMRLRSLRRLEEIELLREQAALMEERSGLEDLLENEGTQWDTIIDQ 500 Query: 479 IREVKEIFSK-----STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL 533 +RE K+ F K ++GRRRT+F E ++ L +AMI++EPITVV S GWIR++ Sbjct: 501 LRETKKQFGKDWSLDGKNIGRRRTSFSEAGVIEEVPL-EAMIDREPITVVCSQMGWIRAM 559 Query: 534 KSHSVDLS-ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL 592 H +DL+ L FK+GD + HA TTDR+L+ ++G+ YT+ A L GRG GE ++L Sbjct: 560 TGH-IDLNRELKFKDGDGPRFIFHAETTDRLLVFGSNGRFYTVSASTLPGGRGMGEPLRL 618 Query: 593 LIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652 ++DL + IV ++ + KLLV SS G+ FIV E +++A TR GK L V + K + Sbjct: 619 MVDLPNEVQIVDILIHKAGRKLLVASSAGDGFIVPEDDVLAQTRGGKQVLNVRGDAKAMI 678 Query: 653 VVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWI 712 VTGD VAVVGENRK+L+F +D++PEM RGKGVRLQ YKDGG+SD I F GL+W Sbjct: 679 CAPVTGDAVAVVGENRKVLVFGLDELPEMGRGKGVRLQKYKDGGMSDAITFSRENGLSWQ 738 Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750 D AGR+ R+E DL W GKR G + P+GFPR +F Sbjct: 739 DPAGRT--RTEADLTEWTGKRATAGRMAPRGFPRDNRF 774 >gi|197105328|ref|YP_002130705.1| topoisomerase IV, subunit A [Phenylobacterium zucineum HLK1] gi|196478748|gb|ACG78276.1| topoisomerase IV, subunit A [Phenylobacterium zucineum HLK1] Length = 752 Score = 796 bits (2056), Expect = 0.0, Method: Compositional matrix adjust. Identities = 390/730 (53%), Positives = 516/730 (70%), Gaps = 9/730 (1%) Query: 25 ALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIG 84 AL RYLAYALS I +RA+PD+RDG KPV RR+++AM EM L+ A +K A++VGEV+G Sbjct: 24 ALSRRYLAYALSVITDRALPDVRDGLKPVQRRVLYAMREMRLNPENAARKCAKVVGEVMG 83 Query: 85 KLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELIL 144 HPHGDQ++YD+LVR+AQ F QRYPL+ GQGNFGNIDGD+AAA RYTEA++T A L+L Sbjct: 84 GYHPHGDQAIYDTLVRMAQSFAQRYPLVDGQGNFGNIDGDNAAAMRYTEAKLTAAATLLL 143 Query: 145 QGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAAL 204 G++EDAVDF+ TY+ D EPVV P+ FPNLLANG++GIAVGMATSIP HN E+ +A L Sbjct: 144 DGIEEDAVDFKPTYDGSDDEPVVLPAGFPNLLANGSTGIAVGMATSIPPHNAGELIDACL 203 Query: 205 ALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRG 264 L++NPE S E L+ ++ GPDFPTGG+IVE R+S+ E+Y GRGG RVRARW E++G+G Sbjct: 204 LLLENPEASTEALMTHVQGPDFPTGGVIVEPRQSLAETYATGRGGVRVRARWTKEDLGKG 263 Query: 265 SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDL 324 ++ IVVTEIPYQV+K+ L+EK+AELI AK+ PLL D+RDESAEDVR+VL PK+R+++ ++ Sbjct: 264 TYQIVVTEIPYQVKKADLVEKLAELIEAKKAPLLGDVRDESAEDVRLVLEPKSRNVEAEV 323 Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384 LMES+F LSD+ETRF +N+NVL P VM L LK +L HRREVL RR+ R++ I+ Sbjct: 324 LMESLFKLSDLETRFSVNLNVLDARGTPGVMNLRQALKAFLDHRREVLVRRARHRLEKIE 383 Query: 385 RRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEE 444 R+ IL GL+IAYLN+DE+I I+R EDKPK ++ FSL+E Q DAILN RLR L KLEE Sbjct: 384 ARLHILDGLMIAYLNLDEVIRIVRYEDKPKEKLIETFSLSEIQADAILNTRLRQLAKLEE 443 Query: 445 YQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSR 504 +I+ E L E++ I +L S QW + +R VK K D RR+TF E + Sbjct: 444 MEIRREHAELAEERDGILKMLASDAAQWKLVGEGLRHVKAELGKLND---RRSTFGEAPQ 500 Query: 505 ADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRIL 564 D +AMI +EPIT+++S RGWIR+ K D S L FKEGD L+ + A TTD++L Sbjct: 501 VDAEAAIEAMIVREPITIILSERGWIRAAKGRIEDPSELKFKEGDKLQFLVPAETTDKLL 560 Query: 565 LLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAF 624 + ++DG+ +TL L RGHGE ++L+IDL+ IV F + K L+ S +G F Sbjct: 561 IFASDGRFFTLGCDKLPGARGHGEPLRLMIDLDDKVGIVDVFPHKPGAKRLLASKQGYGF 620 Query: 625 IVEESEIIANTRKGKTFLKVSSEEK----MKLVVKVTGDHVAVVGENRKLLIFSIDQIPE 680 I+ E E IA R GK L K + + VTGD +AVVG+N K+L+F + ++PE Sbjct: 621 ILPEEEAIAFRRAGKQVLNAGDPAKKGEGAAVCLPVTGDQIAVVGDNGKILVFPLAELPE 680 Query: 681 MSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740 M RGKGV+LQSY++GG+ D + F EG WID+AGR+ R+ + W G+R G G L Sbjct: 681 MPRGKGVKLQSYREGGLRDALVFNAAEGAAWIDAAGRT--RAWDGWQEWAGRRAGAGKLA 738 Query: 741 PKGFPRSGKF 750 PKGFP + +F Sbjct: 739 PKGFPATKRF 748 >gi|114797721|ref|YP_759608.1| DNA topoisomerase IV subunit A [Hyphomonas neptunium ATCC 15444] gi|114737895|gb|ABI76020.1| DNA topoisomerase IV, A subunit [Hyphomonas neptunium ATCC 15444] Length = 744 Score = 794 bits (2050), Expect = 0.0, Method: Compositional matrix adjust. Identities = 392/727 (53%), Positives = 529/727 (72%), Gaps = 6/727 (0%) Query: 25 ALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIG 84 AL +RYLAYALSTI RA+PD+RDG KPV RRI++ M + LD ++K A+IVG+V+G Sbjct: 21 ALSKRYLAYALSTITSRALPDVRDGLKPVQRRILYGMRVLRLDPEGGYRKCAKIVGDVMG 80 Query: 85 KLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELIL 144 HPHGD S+YD+LVRLAQ F RYPL+ GQGNFGNIDGDSAAAYRYTEARMT+ AEL++ Sbjct: 81 NYHPHGDSSIYDTLVRLAQDFNVRYPLVDGQGNFGNIDGDSAAAYRYTEARMTRGAELLM 140 Query: 145 QGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAAL 204 +G+DE+AVDFR Y E D EPVV P+ FPNLLANG +GIAVGMATSIP HNV EI +AA Sbjct: 141 EGLDENAVDFRPNYAENDEEPVVLPAGFPNLLANGATGIAVGMATSIPPHNVAEIIDAAR 200 Query: 205 ALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRG 264 LI+ P+ + E+L+E++ GPDFPTGG+IVE R S++E+Y GRG FR+RARW VE+ GRG Sbjct: 201 HLIEKPKATTEELMEFVQGPDFPTGGVIVEDRASMLEAYETGRGAFRMRARWHVEDTGRG 260 Query: 265 SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDL 324 ++ I+VTEIPYQVQKSRL+EK++EL+ AK++PLLED+RDESAEDVR+VL P+ ++++PD+ Sbjct: 261 TYQIIVTEIPYQVQKSRLLEKLSELLEAKKVPLLEDVRDESAEDVRLVLVPRAKTVEPDV 320 Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384 LMES+F D+ETRF LNMNVL G PQVM L +L+ +L HRREV+ RR+ FR+ I+ Sbjct: 321 LMESLFRTCDLETRFSLNMNVLHKG-APQVMGLRDVLQAYLDHRREVVVRRAEFRLDKIE 379 Query: 385 RRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEE 444 +R+ IL+G L AYLNIDE+I IIR ED+PKPV++ RF +++ Q +AILNLRLR+LRKLEE Sbjct: 380 KRLHILEGFLKAYLNIDEVIRIIRTEDEPKPVLMKRFKISDIQAEAILNLRLRALRKLEE 439 Query: 445 YQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSR 504 +I+ E L E++++ L+ S ++QW +++ E++ ++ F ST LGRRR TF + Sbjct: 440 MEIQGEHTKLTEERDELVLLIGSVRRQWTRVSKELKAARDEFDPSTALGRRRATFEQAPT 499 Query: 505 ADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRIL 564 D A +A KEP+TVV+S +GWIR +K H +D + FKEGD +TD+++ Sbjct: 500 VDLAAALEATRPKEPVTVVLSAQGWIRGMKGHGLDPDTIKFKEGDGPSFTEEVMSTDKLV 559 Query: 565 LLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAF 624 +S+DG+A+ LPA L GRGHGE I++ I+L N IV F ++ K ++ SS G F Sbjct: 560 FMSSDGRAFMLPADKLPGGRGHGEPIRISIELEDNVAIVGMFKFEPERKRVMASSTGYGF 619 Query: 625 IVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRG 684 +V E+E+ +N + GK + + + V V GD +AVVG NRK+LIF + +PEM RG Sbjct: 620 VVPEAELESNRKAGKQIVNTGGGH-LNVCVPVLGDMIAVVGTNRKMLIFPLKDLPEMPRG 678 Query: 685 KGVRLQSYKDGG-ISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKG 743 KG +LQSY G ++D+I F +GL + + GR R+ + W G+R G +VPKG Sbjct: 679 KGNKLQSYSGGAELADLITFDKRDGLIVV-TGGRF--RAFEEWKEWKGQRAQAGKVVPKG 735 Query: 744 FPRSGKF 750 FPR+G F Sbjct: 736 FPRTGTF 742 >gi|254438270|ref|ZP_05051764.1| DNA topoisomerase IV, A subunit [Octadecabacter antarcticus 307] gi|198253716|gb|EDY78030.1| DNA topoisomerase IV, A subunit [Octadecabacter antarcticus 307] Length = 804 Score = 793 bits (2049), Expect = 0.0, Method: Compositional matrix adjust. Identities = 389/758 (51%), Positives = 535/758 (70%), Gaps = 32/758 (4%) Query: 21 SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVG 80 +LR AL +RYL YALSTI RA+PD RDG KPVHRRI++AM E+ L F+KSA+I G Sbjct: 50 TLRRALGDRYLTYALSTIMHRALPDARDGLKPVHRRILYAMRELKLASKGGFRKSAKISG 109 Query: 81 EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVA 140 +V+G HPHGD ++YD++ RLAQ F RYPL+ GQGNFGNIDGD+ AA RYTEARMT A Sbjct: 110 DVMGNYHPHGDAAIYDAMARLAQDFNVRYPLVDGQGNFGNIDGDNPAAARYTEARMTAAA 169 Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200 E +L+G++E+AVDFR+ Y+ EPVV P+ FPNLLANG+SGIAVGMAT+IP HN++E+ Sbjct: 170 EALLEGLNENAVDFRENYDGTLEEPVVLPAAFPNLLANGSSGIAVGMATNIPPHNLEELI 229 Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEE 260 A L LI P+ E L+ YI GPDFPTGG+IVE +E+I E+YR G+GGFR+R ++ VE+ Sbjct: 230 GACLHLIKTPDARDETLMNYIPGPDFPTGGVIVEPKENIAEAYRTGKGGFRLRCKYEVED 289 Query: 261 VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSL 320 +GRG W ++VTEIPYQVQKSRLIEK+AE+I K++P+L D+RDESAED+RIVL PK++++ Sbjct: 290 LGRGQWQVIVTEIPYQVQKSRLIEKLAEVIELKKVPILADVRDESAEDIRIVLEPKSKNV 349 Query: 321 DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRM 380 D ++LM ++ S++ETRF LNMNVL G P+V L +L+ +L HRR+VL RRS+ RM Sbjct: 350 DVEVLMGMLYRNSELETRFSLNMNVLIDGLTPKVCSLKEVLRAFLDHRRDVLIRRSTHRM 409 Query: 381 QAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS--------------------- 419 ID R+E+L+G +IA+LN+D +I IIR ++ PK +++ Sbjct: 410 VKIDHRLEVLEGFIIAFLNLDRVIDIIRYDNDPKKALMAEDWGKTHVRAMDEADYVSPLT 469 Query: 420 ------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWN 473 LT+ Q +AILN+RLRSLR+LEE ++ E D L+ E+ ++ LL+S QW Sbjct: 470 ALVGEPEMGLTDVQAEAILNMRLRSLRRLEEIELVKERDALMLERAGLEDLLDSDDLQWK 529 Query: 474 QIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL 533 IA ++RE +++F ++ G RRT F E + L +AMI+KEP+TVV S GWIR++ Sbjct: 530 TIAEQLRETRKLFGSNSKGGARRTAFAEAGVIEDVPL-EAMIDKEPVTVVCSKMGWIRAM 588 Query: 534 KSHSVDLS-ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL 592 H +DL+ L FK+GD + HA TTDR+L+ ++G+ YTL A L GRG GE ++L Sbjct: 589 TGH-IDLARELKFKDGDEGRFVFHAQTTDRLLVFGSNGRFYTLGASTLPGGRGMGEPLRL 647 Query: 593 LIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652 ++DL + +IV F++ + +L++VSS G+ FIV E ++IA TR GK L V + + K+ Sbjct: 648 MVDLPNEAEIVALFIHRAGNRLMIVSSAGDGFIVPEDDVIAQTRAGKQALNVKGDVRAKV 707 Query: 653 VVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWI 712 V GDHVA VGENRK+L+F +D++PEM RGKGVRLQ YKDGG+SD F + +GL+W+ Sbjct: 708 CSTVIGDHVACVGENRKVLLFPLDELPEMGRGKGVRLQKYKDGGLSDATTFTLADGLSWL 767 Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750 D AGR+ R++ +L W KR G G + P+GFPR +F Sbjct: 768 DPAGRT--RTQTELGEWAAKRAGAGRMAPRGFPRDNRF 803 >gi|260576309|ref|ZP_05844301.1| DNA topoisomerase IV, A subunit [Rhodobacter sp. SW2] gi|259021577|gb|EEW24881.1| DNA topoisomerase IV, A subunit [Rhodobacter sp. SW2] Length = 767 Score = 793 bits (2047), Expect = 0.0, Method: Compositional matrix adjust. Identities = 386/760 (50%), Positives = 523/760 (68%), Gaps = 25/760 (3%) Query: 13 VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72 +E + LR A+ ERYL YALSTI RA+PD RDG KPVHRRI+ AM E+ L +AF Sbjct: 10 IEPQEHSEPLRRAIGERYLTYALSTIMHRALPDARDGLKPVHRRILFAMRELKLSPTSAF 69 Query: 73 KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132 +KSA+I G+V+G HPHGD ++YD++ RLAQ F RYPL+ GQGNFGNIDGD+ AA RYT Sbjct: 70 RKSAKISGDVMGNYHPHGDAAIYDAMARLAQDFNVRYPLVDGQGNFGNIDGDNPAASRYT 129 Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192 EAR+T +AE +++G+ E+AVDFR Y+ EPVV P+ FP+LLANG+SGIAVGMAT+IP Sbjct: 130 EARLTAIAEALMEGLAENAVDFRPNYDGTLEEPVVMPAAFPHLLANGSSGIAVGMATNIP 189 Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252 HN+ E+ + LALI +P++ L++ I GPDFPTGG+IVE R SI++SYR GRG FR+ Sbjct: 190 PHNLHELIDGCLALIKHPDLPDAALVDLIPGPDFPTGGVIVEPRASILDSYRTGRGSFRL 249 Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312 RARW VE++GRG W IVVTEIPYQVQKS+LIE++AELI K+ PLL D+RDES DVR++ Sbjct: 250 RARWAVEDLGRGQWQIVVTEIPYQVQKSKLIERLAELIQTKKTPLLADVRDESTADVRLI 309 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 L P+ R++DPD+LM ++F SD+E RF LNMNVL GR P+V L +L+ +L H+REVL Sbjct: 310 LEPRVRTVDPDMLMGTLFRNSDLELRFSLNMNVLIDGRTPKVCSLREVLRAFLDHKREVL 369 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK------------------ 414 RRS R++ ID R+EIL+G +I +LN+D +I IIR + PK Sbjct: 370 QRRSRHRLEKIDHRLEILEGFIITFLNLDRVIDIIRYDADPKRALMAEDWGKKHRRATSE 429 Query: 415 ----PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQ 470 P LTE Q +AILN+RLRSLR+LEE ++ +E D L+ E+ ++ LL S Sbjct: 430 KDYVPPAPGEGELTEVQAEAILNMRLRSLRRLEELELIAERDALMVERAGLEDLLASDAL 489 Query: 471 QWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI 530 QW +I ++ EV++ F K++ G RR+TF E A++ +AMIE+EPITV+ S GWI Sbjct: 490 QWKRIGKDLAEVQKTFGKASKGGARRSTFAEAGEAEEVPY-EAMIEREPITVICSKMGWI 548 Query: 531 RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAI 590 R++K H S FK+GD + HA TTDRI+L+ ++G+ YTL NL GRG GE + Sbjct: 549 RAMKGHVALDSEQKFKDGDEGRFLFHAETTDRIILIGSNGRVYTLLGANLPGGRGMGEPV 608 Query: 591 QLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM 650 +L++DL ++ +I+ ++ KLL+ S+ G+ F++ E++A T+ GK L V K Sbjct: 609 RLMVDLPNDAEIIDLMIHRPGLKLLIASTAGDGFVLPSDEVVAQTKAGKQVLVVREGVKT 668 Query: 651 KLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLT 710 L V GD VAVVG+NRK+L+F + +PEM+RGKGVRLQ YKDGG++D F + +GL+ Sbjct: 669 ALCRPVKGDAVAVVGDNRKMLVFPLADLPEMARGKGVRLQKYKDGGLADATTFVLAQGLS 728 Query: 711 WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750 W D AGR+ R+E DL W R G + P+GFPR +F Sbjct: 729 WKDPAGRT--RTETDLAEWQAARATAGRMAPRGFPRDNRF 766 >gi|83311684|ref|YP_421948.1| DNA topoisomerase IV subunit A [Magnetospirillum magneticum AMB-1] gi|82946525|dbj|BAE51389.1| Type IIA topoisomerase, A subunit [Magnetospirillum magneticum AMB-1] Length = 744 Score = 792 bits (2046), Expect = 0.0, Method: Compositional matrix adjust. Identities = 387/742 (52%), Positives = 534/742 (71%), Gaps = 8/742 (1%) Query: 13 VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72 V +++ L AL ERYLAYA+STI R++PD+RDG KPVHRR++ AM ++ LD F Sbjct: 6 VTGDIRDTPLAEALGERYLAYAMSTIVSRSLPDVRDGLKPVHRRLLFAMRQLKLDPSGGF 65 Query: 73 KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132 KK AR+VG+VIGK HPHGD +VYD+LVRLAQ F RYPL+ GQGNFGNIDGD+AAA RYT Sbjct: 66 KKCARVVGDVIGKYHPHGDVAVYDTLVRLAQDFAVRYPLVEGQGNFGNIDGDNAAAMRYT 125 Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192 EA++T++A +++G+DED+VDFR TY+ + EPVV PS FPNLLANG++GIAVGMATSIP Sbjct: 126 EAKLTEIAAALMEGLDEDSVDFRPTYDGTEEEPVVMPSAFPNLLANGSAGIAVGMATSIP 185 Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252 HN+ EIC+A LI P+ +++L+ ++ GPDFPTGG++VE++ +I E+YR G+G FRV Sbjct: 186 PHNIGEICDALDHLIAKPDCDVDELIAHMPGPDFPTGGVLVETQAAITEAYRTGKGAFRV 245 Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312 RA+W VE++ G + IV+TEIPYQVQK++LIEKIAEL+ K++PLL DIRDESAED+R+V Sbjct: 246 RAKWAVEKLSHGLYQIVITEIPYQVQKAKLIEKIAELLSEKKLPLLADIRDESAEDIRLV 305 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGR----VPQVMPLDGILKEWLAHR 368 L P+NR+++ +L+ME +F +D+E+RF LNMNVL+ P VM L +L+ +L HR Sbjct: 306 LEPRNRTVEAELVMEQLFRQTDLESRFSLNMNVLAPDAHGHLTPGVMNLKEVLRAFLDHR 365 Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQV 428 VL RR+ FR++ I +R+E+L+G L Y ++D++I IIR D+PK ++ F L+E Q Sbjct: 366 MVVLERRARFRLEKIAKRLEVLEGFLKVYADLDKVIRIIRFADEPKAELIKTFKLSEVQA 425 Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488 +AILN+RLRSL KL+E +IK+E L AEK +++LL ++W IA + E ++ F Sbjct: 426 EAILNMRLRSLNKLQELEIKTEHAELSAEKADLEALLADEPRRWAAIAAQNDETRKAFGG 485 Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548 +T LG+RRT + A + +A +E+E IT+V+S +GWIR+LK HS AL FKEG Sbjct: 486 ATALGKRRTELGDAPSAVVVPI-EAYVEREAITMVLSEKGWIRALKGHSDAPEALKFKEG 544 Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608 D L L A TTD+IL+ +TDG+ YT+ L SGRGHGE ++L+IDL + DI V+ Sbjct: 545 DQLGHLLKAWTTDKILVFATDGRFYTIGGDKLPSGRGHGEPLRLMIDLAGDVDIAAVMVH 604 Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENR 668 KLLV ++ F+VEE+E++A TR GK L + EK K + GD VAV+GENR Sbjct: 605 KPGRKLLVATNTDRGFVVEENEVLAQTRAGKMVLNCADGEKAKFCLPFEGDAVAVIGENR 664 Query: 669 KLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLG 728 KLL+F ++IP ++RG+GV LQ Y+DGG++D+ F + +GLTW + G R+E+DL Sbjct: 665 KLLVFMAEEIPVLTRGRGVILQKYRDGGMADIKVFTLAQGLTW--NLGDRV-RTESDLTP 721 Query: 729 WLGKRGGVGSLVPKGFPRSGKF 750 WLGKR VG L P GFPR+ +F Sbjct: 722 WLGKRASVGRLPPTGFPRNNRF 743 >gi|83858199|ref|ZP_00951721.1| DNA topoisomerase IV subunit A [Oceanicaulis alexandrii HTCC2633] gi|83853022|gb|EAP90874.1| DNA topoisomerase IV subunit A [Oceanicaulis alexandrii HTCC2633] Length = 746 Score = 792 bits (2045), Expect = 0.0, Method: Compositional matrix adjust. Identities = 390/725 (53%), Positives = 526/725 (72%), Gaps = 3/725 (0%) Query: 21 SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVG 80 S AL RYLAYALSTI +RA+PD RDG KPVHRR+++AM + L AFKK AR+VG Sbjct: 16 SFNDALSSRYLAYALSTITQRALPDARDGLKPVHRRLLYAMRLLKLSPDTAFKKCARVVG 75 Query: 81 EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVA 140 +VIG+ HPHGDQ+VY++LVRLAQ F RYPL+ GQGNFGN+DGD AAA RYTEAR+T+ A Sbjct: 76 DVIGRFHPHGDQAVYEALVRLAQDFASRYPLVEGQGNFGNVDGDGAAAMRYTEARLTEAA 135 Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200 LILQ DE VDFR+TY+ ED EP+V P+ FPNLLANG++GIAVGMAT+IP HN E+C Sbjct: 136 ILILQDYDEGTVDFRETYDGEDKEPLVLPAAFPNLLANGSAGIAVGMATNIPPHNAAELC 195 Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEE 260 +AA LI P + E LL Y+ GPDFPTGG+ VE+RE+I+E+Y GRGGFR+RARW VEE Sbjct: 196 DAARHLIKTPGAATETLLNYVQGPDFPTGGVCVETRENILEAYETGRGGFRLRARWEVEE 255 Query: 261 VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSL 320 +GRG W IVVTEIPY VQK++LIE+IA L+ K++PLL D+ DESAEDVR++L PK+R++ Sbjct: 256 LGRGQWQIVVTEIPYLVQKAKLIERIAALLDQKKLPLLADVMDESAEDVRLILEPKSRTI 315 Query: 321 DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRM 380 DP LLMES+F L+D+E RF LN+NVL P+V+ L L+ WL HRR V+ RR++ R+ Sbjct: 316 DPALLMESVFKLTDLEVRFALNLNVLDPTGAPRVVGLKEALQIWLDHRRVVVVRRATTRL 375 Query: 381 QAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLR 440 + ++ R+E+L G ++AYLN+DE+I IIR ED PK ++ FSLT+ Q +AILN+RLRSLR Sbjct: 376 EHVEDRLEVLSGFMVAYLNLDEVIRIIRFEDHPKDELIKTFSLTDRQAEAILNMRLRSLR 435 Query: 441 KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500 KLEE +I+ E L E++++++L+ QW ++ E+ +VK+ F +T+LG+RRTTF Sbjct: 436 KLEEMEIRDEQSRLEGERDELNALIADESLQWKKVDSEVADVKKRFGPNTELGKRRTTFA 495 Query: 501 EVSRADKATL-QQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHT 559 + AD A + ++A+I +EPIT+V+S GW+R+LK H+ D++ + K+GD +L A T Sbjct: 496 DAPAADLADMVEEALIPREPITIVLSRMGWVRALKGHTDDVTGIKHKDGDETAFSLKAET 555 Query: 560 TDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSS 619 TD+IL+L+TDG+ YTL A L GRG GE ++LLID++ + + V F Y KLL+ S+ Sbjct: 556 TDKILMLTTDGRVYTLDASKLPGGRGFGEPVRLLIDMDESAEPVALFKYSPDRKLLLAST 615 Query: 620 KGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIP 679 G+ F+V E E+ A R G+ L V K + + +TGD +AV+GEN+KLL+F+ D+IP Sbjct: 616 SGHGFVVAEKELPAIKRAGRQVLNVIDGHKAMMALPMTGDRIAVLGENKKLLVFAADEIP 675 Query: 680 EMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSL 739 EM RGKGVRL K G ++D+ F EGL +D AGR + D + GKR G L Sbjct: 676 EMVRGKGVRLLGGKAGEVADITVFNAEEGLVRVDPAGRRH--LVEDWRYYEGKRAQAGKL 733 Query: 740 VPKGF 744 P+GF Sbjct: 734 APRGF 738 >gi|330994747|ref|ZP_08318669.1| DNA topoisomerase 4 subunit A [Gluconacetobacter sp. SXCC-1] gi|329758008|gb|EGG74530.1| DNA topoisomerase 4 subunit A [Gluconacetobacter sp. SXCC-1] Length = 736 Score = 791 bits (2043), Expect = 0.0, Method: Compositional matrix adjust. Identities = 379/727 (52%), Positives = 524/727 (72%), Gaps = 7/727 (0%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 +++ L AL ERYLAYA+STI R++PD+RDG KPVHRR+++AM ++ LD A FKK Sbjct: 7 HIEDTKLADALSERYLAYAMSTIMSRSLPDVRDGLKPVHRRMVYAMQQLKLDPTAGFKKC 66 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 AR+VG+VIGK HPHGD SVY++LVRLAQ F RYPL+ GQGNFG+IDGD+AAA RYTE+R Sbjct: 67 ARVVGDVIGKYHPHGDASVYEALVRLAQDFAVRYPLVEGQGNFGSIDGDNAAAMRYTESR 126 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 +T VA+ +L+G+DED+VDFR TY+ E+ EPVV P+ FPNLLANG +GIAVGMATSIP HN Sbjct: 127 LTAVAKALLEGIDEDSVDFRPTYDGEEHEPVVLPAAFPNLLANGAAGIAVGMATSIPPHN 186 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 V EIC AALALI P + +LL ++ GPDFPTGG IVE R++I+ +Y GRG FR+R++ Sbjct: 187 VGEICAAALALIRKPATTTAELLAHMPGPDFPTGGSIVEDRDAILRAYETGRGSFRIRSK 246 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315 W VE+ G+W IVVTEIPYQVQKSRLIE++A+L+ K++PLL DIRDES D+R+VL P Sbjct: 247 WDVEQGRFGTWQIVVTEIPYQVQKSRLIEQVADLMEQKKLPLLADIRDESTTDIRLVLEP 306 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 K+R ++P +LME++F + +E+RF LNMNVL +VP V L +L+ WL HR +VL RR Sbjct: 307 KSRGIEPAVLMETLFRATQLESRFGLNMNVLGADQVPGVRSLKEVLQAWLDHRHDVLLRR 366 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435 S+ R+QA+DRR+EIL G L YLN+DE+I I+R ED K +++ F LTE Q D++LN+R Sbjct: 367 SANRLQAVDRRLEILNGFLAVYLNLDEVIRIVREEDDAKSALIAAFDLTELQADSVLNMR 426 Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495 LRSLR+LEE +I++E L AEK+ + LL + Q+W IA EI+++++ F T LG+R Sbjct: 427 LRSLRRLEEMEIRNEHARLSAEKQALHDLLENEGQRWKHIAGEIKDIQKTFGGGT-LGKR 485 Query: 496 RTTFCEVSRADKATLQQAM-IEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIA 554 R+ + + ++ A+ +E++P+TV++S +GWIR+++ H D AL FKEGD L +A Sbjct: 486 RSLLADAPV--EIDVEAALPVERDPLTVILSQKGWIRTVRGHGQDPQALKFKEGDDLGMA 543 Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614 + H+ DR+ + +TDG+A+TL +L GRG G+ ++LLIDL++++DI+T F D + Sbjct: 544 VECHSNDRLCVFATDGRAFTLRVADLPRGRGDGQPLRLLIDLSNDEDIITMFPLDDARRR 603 Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFS 674 L+ SS G IV ES + A R G+ L + E + V GDHV V+G+NR++L+F Sbjct: 604 LLASSTGRGMIVAESAMTAEKRTGRQVLNLKDRESALICVPAEGDHVLVLGQNRRMLVFP 663 Query: 675 IDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRG 734 +DQ+PEM+RG GV LQ YKDGG+ D + F G+ W D A R+ DL ++GKR Sbjct: 664 LDQLPEMARGLGVILQKYKDGGLKDAVVFTADAGVAWPDPA---RVRAFADLKDYVGKRA 720 Query: 735 GVGSLVP 741 +G P Sbjct: 721 EMGKPAP 727 >gi|254293712|ref|YP_003059735.1| DNA topoisomerase IV subunit A [Hirschia baltica ATCC 49814] gi|254042243|gb|ACT59038.1| DNA topoisomerase IV, A subunit [Hirschia baltica ATCC 49814] Length = 750 Score = 791 bits (2043), Expect = 0.0, Method: Compositional matrix adjust. Identities = 386/731 (52%), Positives = 519/731 (70%), Gaps = 8/731 (1%) Query: 25 ALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIG 84 AL +RYLAYALSTI RA+PD+RDG KPVHRR+++AM + L+ AFKKSAR+VG+VIG Sbjct: 22 ALSKRYLAYALSTITSRALPDVRDGLKPVHRRLMYAMRLLKLNPELAFKKSARVVGDVIG 81 Query: 85 KLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELIL 144 K HPHGD S+YD+LVRLAQ F RYPL+ GQGNFGNIDGDSAAA RYTE+R+T A+L+L Sbjct: 82 KYHPHGDASIYDALVRLAQDFNVRYPLVDGQGNFGNIDGDSAAAMRYTESRLTPAAQLLL 141 Query: 145 QGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAAL 204 +G+DE+AVDF++TY+ D EPVV S FPNLL NG+SGIAVGMATSIP HN E +A + Sbjct: 142 EGLDENAVDFKETYDGGDKEPVVLASGFPNLLCNGSSGIAVGMATSIPPHNAAETIDACI 201 Query: 205 ALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRG 264 LI+N + L++ + GPDFPTGG IVE +SI+++Y GRGGFR+R +W E++ RG Sbjct: 202 HLIENKSATTADLVKIMPGPDFPTGGEIVEDEDSILKAYETGRGGFRMRCKWEKEDLPRG 261 Query: 265 SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDL 324 W IVVTEIPYQVQKS+LIE++AELI K+ PLL+D+ DESAED+R+VL P+N+ +DPD+ Sbjct: 262 LWQIVVTEIPYQVQKSKLIERLAELIETKKAPLLDDVMDESAEDIRVVLVPRNKLVDPDV 321 Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384 LM S++ +SD+E+RF LNMNVL VP+VM L +L+ +LAHR+EV+ RR+ R+ I+ Sbjct: 322 LMASLYKMSDLESRFSLNMNVLDHN-VPRVMGLKQVLQCYLAHRQEVIVRRAQHRLDKIE 380 Query: 385 RRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEE 444 R+ IL+G L AYLNIDE+I IIR ED PK ++ F L+E Q DAILN+RLR+LRKLEE Sbjct: 381 ARLHILEGYLKAYLNIDEVIRIIRYEDHPKEELMKAFKLSEIQTDAILNMRLRALRKLEE 440 Query: 445 YQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSR 504 +I+ E D L E++K+ L+ S +QW ++ +++ +E+F +DLGRRR+ F Sbjct: 441 IEIQGEHDKLTQERDKLVQLIGSEARQWTEVKRQLKIAREVFDPESDLGRRRSKFGVAVE 500 Query: 505 ADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRIL 564 D +AMI KEPITV++S GWIR+LK H+ + L FK+GD L L TTD+++ Sbjct: 501 IDADAALEAMIPKEPITVILSKMGWIRALKGHNQAMDKLKFKDGDELAFTLECQTTDKVV 560 Query: 565 LLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAF 624 LL++ GKA+T A L SGRGHGE I+L IDL +++I+ + + +V S+ G F Sbjct: 561 LLASGGKAFTFAADKLPSGRGHGEPIRLSIDLPEDEEIIATITPKTGYRRVVASTAGYGF 620 Query: 625 IVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRG 684 +V E E+++ R GK +V GD VAV+G+N+K+L F ++++PEM+RG Sbjct: 621 VVNEEELVSQKRGGKVIQNPPDGATFAFCPRVEGDMVAVIGDNKKILFFPLEELPEMARG 680 Query: 685 KGVRLQSYKDGG-----ISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSL 739 KGV+LQ+YK G + D+ F +G W D+ GR N S N+ WLGKR G L Sbjct: 681 KGVKLQNYKQSGLINEQLMDICTFDSEDGFFWKDTGGR--NISLNEWRDWLGKRAAAGKL 738 Query: 740 VPKGFPRSGKF 750 PKGF R+GKF Sbjct: 739 APKGFNRTGKF 749 >gi|56695629|ref|YP_165980.1| DNA topoisomerase IV subunit A [Ruegeria pomeroyi DSS-3] gi|56677366|gb|AAV94032.1| DNA topoisomerase IV, A subunit [Ruegeria pomeroyi DSS-3] Length = 782 Score = 790 bits (2040), Expect = 0.0, Method: Compositional matrix adjust. Identities = 397/783 (50%), Positives = 531/783 (67%), Gaps = 40/783 (5%) Query: 4 DNISNSNTLVEENVKAVS--LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61 D I + N + VS LR A+ ERYL YALSTI RA+PD RDG KPVHRRI++AM Sbjct: 3 DTIDDPNMKQDGGGHQVSEPLRRAIGERYLTYALSTIMHRALPDARDGLKPVHRRILYAM 62 Query: 62 SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121 E+ L F+KSA+I G+V+G HPHGD ++YD++ RLAQ F RYPL+ GQGNFGNI Sbjct: 63 RELRLSSSGGFRKSAKISGDVMGNYHPHGDAAIYDAMARLAQDFNVRYPLVDGQGNFGNI 122 Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181 DGD+ AA RYTEARMT VAE +L G++EDAVDFRD Y+ +EPVV P++FPNLLANG+S Sbjct: 123 DGDNPAASRYTEARMTIVAEALLDGLNEDAVDFRDNYDGTLTEPVVLPAQFPNLLANGSS 182 Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241 GIAVGMAT+IP HN+ E+C+A L LI P+ + LL Y+ GPDFPTGGIIVE ESI + Sbjct: 183 GIAVGMATNIPPHNIAELCDACLHLIKTPDARDDTLLNYVPGPDFPTGGIIVEPPESIAQ 242 Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301 +YR GRG FR+R ++ VE++GRG W IVVTEIPYQVQKS+LIEK+AE+I K++P+L D+ Sbjct: 243 AYRTGRGSFRLRCKYEVEDLGRGQWQIVVTEIPYQVQKSKLIEKLAEVIQTKKVPILADV 302 Query: 302 RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361 RDESA+D+R++L P+ +++DP++LM ++ SD+E RF LNMNVL G P+V + +L Sbjct: 303 RDESADDIRLILEPRTKNVDPEVLMGMLYRNSDLEVRFSLNMNVLIDGVTPKVCSMKEVL 362 Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV--- 418 + +L HR+EVL RRS R+ ID R+E+L+G +IA+LN+D +I IIR ++ PK ++ Sbjct: 363 RAFLDHRQEVLLRRSRHRLGKIDHRLEVLEGFIIAFLNLDRVIDIIRYDEDPKAALMREE 422 Query: 419 -------------------SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKE 459 L+E Q +AILN+RLRSLR+LEE ++ E D L+AE+ Sbjct: 423 WGIDHPRALNEADYVSPAPGEGELSEVQAEAILNMRLRSLRRLEEMELIRERDALMAERA 482 Query: 460 KIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEP 519 +I+ LL QW +I+ +++E K+ F K G RRT F E ++ L +AMIE+EP Sbjct: 483 EIEDLLADPALQWARISDQLKETKKTFGKDFPGGARRTRFAEAGEVEEVPL-EAMIEREP 541 Query: 520 ITVVISNRGWIRSLKSHSVDLS-ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAG 578 ITVV S GW+R++ H +DL+ L FK+GD + HA TTD++L+ +++G+ YT+ A Sbjct: 542 ITVVCSQMGWVRAMTGH-IDLTRELKFKDGDGPRFIFHAETTDKLLVFASNGRFYTIGAA 600 Query: 579 NLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG 638 NL GRG GE ++L++DL + +IV ++ KLLV S+ GN F+V E+E++A TR G Sbjct: 601 NLPGGRGMGEPLRLMVDLPNEAEIVDILIHQPERKLLVASTAGNGFVVPETEVVAQTRTG 660 Query: 639 KTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYK----- 693 K L V +E+ + V V GDHVAVV +N K L+F +D++PEM RGKGVRLQ Y Sbjct: 661 KQVLNVRDDERALICVPVAGDHVAVVSQNGKFLVFPLDEMPEMGRGKGVRLQKYNMARGK 720 Query: 694 ------DGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747 DGG+SDV F EGL W S G R E DL WL KR VG P GFPRS Sbjct: 721 QGALELDGGLSDVTTFTWAEGLKW--SMGGDKTRHETDLSQWLAKRASVGKRPPYGFPRS 778 Query: 748 GKF 750 KF Sbjct: 779 YKF 781 >gi|126739698|ref|ZP_01755390.1| DNA topoisomerase IV subunit A [Roseobacter sp. SK209-2-6] gi|126719344|gb|EBA16054.1| DNA topoisomerase IV subunit A [Roseobacter sp. SK209-2-6] Length = 781 Score = 790 bits (2039), Expect = 0.0, Method: Compositional matrix adjust. Identities = 399/763 (52%), Positives = 524/763 (68%), Gaps = 38/763 (4%) Query: 22 LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81 LR A+ ERYL YALSTI RA+PD RDG KPVHRRI++AM+ + L F KSA+I G+ Sbjct: 22 LRRAIGERYLTYALSTIMHRALPDARDGLKPVHRRILYAMNRLRLSSNGGFLKSAKISGD 81 Query: 82 VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE 141 +G HPHGD ++YD++ RLAQ F RYPL+ GQGNFGNIDGD+ AA RYTEARMT VAE Sbjct: 82 TMGDFHPHGDAAIYDAMARLAQDFNVRYPLVDGQGNFGNIDGDNPAASRYTEARMTFVAE 141 Query: 142 LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICE 201 +L+G+ EDAVDFRD Y+ +EP V P+ FPN+LANG +GIAVGMAT+IP HN+ E+ + Sbjct: 142 AMLEGLSEDAVDFRDNYDGRLTEPAVLPATFPNILANGAAGIAVGMATNIPPHNIAELID 201 Query: 202 AALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEV 261 A + LI P+ + LL Y+ GPDFPTGGIIVE +E+I ++Y GRG FR+RA+ VE++ Sbjct: 202 ACVHLIKTPDARDDTLLNYVPGPDFPTGGIIVEPKENIAKAYSTGRGSFRLRAKHEVEDL 261 Query: 262 GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLD 321 GRG W IVVTEIPYQVQKS+LIEKIAELI K++P+L D+RDESAED+RI+L PK++++D Sbjct: 262 GRGQWQIVVTEIPYQVQKSKLIEKIAELIQTKKVPILADVRDESAEDIRIILEPKSKNVD 321 Query: 322 PDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQ 381 PD+LM +F SD+ETRF LNMNVL G P+V + +L+ +L HRR+VL RRS RM Sbjct: 322 PDVLMNMMFRNSDLETRFSLNMNVLIDGVTPKVCSMKEVLRAFLDHRRDVLQRRSRHRMA 381 Query: 382 AIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR---------FS---------- 422 ID R+E+L+G +IA+LN+D +I IIR ++ PK ++ FS Sbjct: 382 KIDHRLEVLEGFIIAFLNLDRVIDIIRYDEDPKAALMREDWGQDHPRAFSEAEYVSPAKG 441 Query: 423 ---LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479 L+E Q +AILN+RLRSLRKLEE ++ E D L E+ + LL S + QW +I ++ Sbjct: 442 TGELSEVQAEAILNMRLRSLRKLEEIELTRERDALREERAGLVELLGSEELQWTRITEQL 501 Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539 RE K+ F K + G RRT F E ++ L +AMI+KEPITVV S GW+R++ H +D Sbjct: 502 RETKKQFGKDYEGGARRTLFAEAGEVEEVPL-EAMIDKEPITVVCSQMGWVRAMTGH-ID 559 Query: 540 LS-ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNH 598 LS L FK+GD + HA TTDR+L+ ++G+ YTL A NL GRG GE ++L++DL + Sbjct: 560 LSRELKFKDGDGPRFIFHAETTDRLLVFGSNGRFYTLSAANLPGGRGMGEPVRLMVDLPN 619 Query: 599 NQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG 658 +IV +++ +LLV S GN FI E EI+A TR GK L V +++ K+ + V G Sbjct: 620 EAEIVDLLIHNPEGRLLVASDAGNGFICAEKEIVAQTRSGKQVLNVKDDDRAKICIPVQG 679 Query: 659 DHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYK-----------DGGISDVICFKICE 707 DHVAVV EN K L+FS++++PE+SRGKGVRLQ Y DGG+SDV F + Sbjct: 680 DHVAVVSENGKFLVFSVEEMPELSRGKGVRLQKYNMARGKQGSLELDGGLSDVTTFNWDD 739 Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750 GLTW G++ R E DL WLGKR GVG P GFPR+ KF Sbjct: 740 GLTWEMGGGKT--RHETDLGQWLGKRAGVGKRPPYGFPRNYKF 780 >gi|304321405|ref|YP_003855048.1| DNA topoisomerase IV subunit A [Parvularcula bermudensis HTCC2503] gi|303300307|gb|ADM09906.1| DNA topoisomerase IV subunit A [Parvularcula bermudensis HTCC2503] Length = 754 Score = 790 bits (2039), Expect = 0.0, Method: Compositional matrix adjust. Identities = 382/752 (50%), Positives = 526/752 (69%), Gaps = 13/752 (1%) Query: 4 DNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63 D + T++EE + AL RYLAYALSTI RA+PD+RDG KPVHRRI++AM + Sbjct: 10 DRPAGPETIIEEPMGE-----ALSRRYLAYALSTITARALPDIRDGLKPVHRRILYAMRQ 64 Query: 64 MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123 M L G +++KSA++ G+V+G HPHGDQ++YD++VRL Q F R PLI GQGNFGNIDG Sbjct: 65 MRLGSGGSYRKSAKVAGQVMGDYHPHGDQAIYDAMVRLVQDFSVRIPLIDGQGNFGNIDG 124 Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183 D+AAA RYTE R+T+ AEL+L+G+D D VDFR+TY+ E EPVV P+ FP+LLANG+SGI Sbjct: 125 DNAAAMRYTECRLTEAAELLLEGIDNDTVDFRETYDGEGREPVVLPAAFPHLLANGSSGI 184 Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243 AVGMAT+IP HNV E+ +A L LI P E LL Y+ GPD PTGG+ +ES++ + E+Y Sbjct: 185 AVGMATNIPPHNVAELIDACLHLIKTPNARTETLLNYVKGPDLPTGGVCIESKDDLAEAY 244 Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303 GRGGFR+RARW E++GRG + IVVTEIPYQVQKS+L+E+IA+LI K++P+L D+RD Sbjct: 245 ATGRGGFRIRARWETEDLGRGRYQIVVTEIPYQVQKSKLVERIADLIQTKKLPVLTDVRD 304 Query: 304 ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363 ESAED+R+VL PK SLDP+ +M +IF L+D+ETR LN+NV+ P V L L+ Sbjct: 305 ESAEDIRLVLEPKAGSLDPETVMAAIFKLTDLETRLSLNLNVIGADGAPGVFGLRDCLQA 364 Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSL 423 +L HRR+VL R + +R+ I R+EIL G LIAYLN+DE+I IIR ED PK +++ F L Sbjct: 365 FLDHRRDVLLRGTRYRLDKIAHRLEILDGFLIAYLNLDEVIRIIRYEDDPKAELMATFDL 424 Query: 424 TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483 +E Q +AILN+RLRSLRKLEE ++K E +L AE++ + +LL S QW +IA +++E + Sbjct: 425 SEIQTEAILNMRLRSLRKLEEMELKREHKDLKAEQKDLQALLKSEDIQWERIAGQLKETR 484 Query: 484 EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL 543 + F +DLGRRRT + ++ L + +IEKEP+TVVIS +GW+R+LK H D +++ Sbjct: 485 KSFDPRSDLGRRRTALSDAPITEEVDLDE-LIEKEPVTVVISEKGWVRALKGHVEDKASI 543 Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIV 603 +K+GD + L A TTD+++L+ST+G+ + L +L GRGHGE +L++DL + D++ Sbjct: 544 KYKDGDQGRFVLPAMTTDKVILVSTNGRFFALDVKDLPGGRGHGEPFRLMVDLTNEHDLI 603 Query: 604 TAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG----- 658 F+Y LL+ SS G+ V E +++A TRKGK L V++ + ++ +T Sbjct: 604 DVFLYQGDRTLLLASSAGHGLFVPEEDVLATTRKGKQVLNVAAGAEAQVCRLLTAAPGPN 663 Query: 659 DHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718 D++A +G NRKLLIF +P M +GKGV LQ +G + D CF EGLTW D AGR Sbjct: 664 DYLATIGSNRKLLIFPAGDVPVMVKGKGVVLQKITNGTLVDAKCFSPEEGLTWTDRAGR- 722 Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750 +S + W+GKR G L PKGFPR+ +F Sbjct: 723 -QQSAEEWKEWVGKRAQAGKLPPKGFPRANRF 753 >gi|310817029|ref|YP_003964993.1| DNA topoisomerase IV subunit A [Ketogulonicigenium vulgare Y25] gi|308755764|gb|ADO43693.1| DNA topoisomerase IV subunit A [Ketogulonicigenium vulgare Y25] Length = 769 Score = 789 bits (2038), Expect = 0.0, Method: Compositional matrix adjust. Identities = 386/755 (51%), Positives = 530/755 (70%), Gaps = 28/755 (3%) Query: 21 SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVG 80 +LR A+ +RYL YALSTI RA+PD RDG KPVHRRI++AM E+ L G F+KSA+I G Sbjct: 17 TLRRAIGDRYLTYALSTIMHRALPDARDGLKPVHRRILYAMRELRLASGGGFRKSAKIAG 76 Query: 81 EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVA 140 +V+G HPHGD ++YD++ RLAQ F RYPL+ GQGNFGNIDGDS AA RYTEARMT A Sbjct: 77 DVMGNFHPHGDAAIYDAMARLAQDFNVRYPLVDGQGNFGNIDGDSPAASRYTEARMTAAA 136 Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200 E +L G+DE+AVD+R Y+ EPVV P+ FPNLLANG+SGIAVGMAT+IP HN+ E+ Sbjct: 137 EALLAGLDENAVDYRGNYDGTQEEPVVLPAAFPNLLANGSSGIAVGMATNIPPHNLDEVI 196 Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEE 260 A L LI P + LL +I GPDFPTGG+IVE E+I ++YR GRG FR+RA+W +E+ Sbjct: 197 SACLHLIRAPSADDDSLLAFIPGPDFPTGGVIVEDPENIRQAYRTGRGAFRLRAKWEIED 256 Query: 261 VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSL 320 +GRG W I+VTEIPYQVQKS+LIE++AELI K++P L D+RDESA+DVRIV+ P+ R++ Sbjct: 257 LGRGQWQIIVTEIPYQVQKSKLIERLAELIALKKVPALADVRDESADDVRIVIEPRVRTI 316 Query: 321 DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRM 380 +P++LM +F S++E RF +NMNVL G P+V L +L+ +L HRREVL RR++ R+ Sbjct: 317 EPEMLMGMLFKNSELEIRFNMNMNVLIDGVTPKVCSLKEVLRAFLDHRREVLQRRTTHRL 376 Query: 381 QAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM----------------------- 417 + ID R+E+L G + AYLN+D +I IIR ++ PK + Sbjct: 377 EKIDHRLEVLAGFITAYLNLDRVIDIIRYDEDPKAALQAEDWGLKIPRAADESRYVSPLG 436 Query: 418 --VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQI 475 V+ LTE Q DAILN+RLRSLR+LEE ++ +E D L AE+ + +L+ K QW++I Sbjct: 437 RPVAAGGLTEVQADAILNMRLRSLRRLEEIELVNERDALQAERAGLHALMGDEKLQWSRI 496 Query: 476 ACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKS 535 + E+++V++ F K++ G RRT F E L +AMIE+EP+TV+ S+ GWIR++K Sbjct: 497 SDELKDVRKQFGKTSKGGARRTAFGEGKEVADVPL-EAMIEREPVTVICSDMGWIRAMKG 555 Query: 536 HSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLID 595 H + FK+GD + A HA TTDR+L +++G+ YT+ A NL GRG GE ++L++D Sbjct: 556 HIALDQEMKFKDGDKARFAFHAETTDRLLAFASNGRFYTVLAANLPGGRGTGEPLRLMVD 615 Query: 596 LNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655 L ++ IV ++ KL++ SS G+ FIV E ++IA TR GK L +S +V Sbjct: 616 LPNDAQIVDLLIHRPGQKLILASSAGDGFIVAEDDVIAQTRAGKQVLNLSEGASALIVKP 675 Query: 656 VTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSA 715 V GDHVA VG+NRK+L+F++D++PEM+RGKGV+LQ +KDGG+SD++ + +GL+W +S Sbjct: 676 VQGDHVACVGDNRKMLVFALDELPEMARGKGVKLQKFKDGGLSDLVTLTLAQGLSWKESG 735 Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750 GR+ RSE DL WLGKR G G + P+GFPR +F Sbjct: 736 GRT--RSEPDLSEWLGKRAGTGRMAPRGFPRDNRF 768 >gi|254511118|ref|ZP_05123185.1| DNA topoisomerase IV, A subunit [Rhodobacteraceae bacterium KLH11] gi|221534829|gb|EEE37817.1| DNA topoisomerase IV, A subunit [Rhodobacteraceae bacterium KLH11] Length = 782 Score = 789 bits (2037), Expect = 0.0, Method: Compositional matrix adjust. Identities = 395/783 (50%), Positives = 528/783 (67%), Gaps = 40/783 (5%) Query: 4 DNISNSNTLVEENVKAVS--LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61 D I + N +N ++ LR A+ ERYL YALSTI RA+PD RDG KPVHRRI++AM Sbjct: 3 DTIDDPNMEAPDNGGEIAEPLRRAIGERYLTYALSTIMHRALPDARDGLKPVHRRILYAM 62 Query: 62 SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121 E+ L F+KSA+I G+V+G HPHGD ++YD++ RLAQ F RYPL+ GQGNFGNI Sbjct: 63 RELRLSATGGFRKSAKISGDVMGNYHPHGDAAIYDAMARLAQDFNVRYPLVDGQGNFGNI 122 Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181 DGD+ AA RYTEARMT VAE +L+G++EDAVDFRD Y+ +EPVV P++FPNLLANG+S Sbjct: 123 DGDNPAASRYTEARMTIVAEALLEGLNEDAVDFRDNYDGTLTEPVVLPAQFPNLLANGSS 182 Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241 GIAVGMAT+IP HN+ E+C+A L LI P+ + LL Y+ GPDFPTGG+IVE E+I + Sbjct: 183 GIAVGMATNIPPHNISELCDACLHLIKTPDARDDTLLNYVPGPDFPTGGVIVEPPENIAQ 242 Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301 +YR GRG FR+R ++ VE++GRG W IVVTEIPYQVQKS+LIEKIAELI K+IP+L D+ Sbjct: 243 AYRTGRGSFRLRCKFEVEDLGRGQWQIVVTEIPYQVQKSKLIEKIAELIQTKKIPILADV 302 Query: 302 RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361 RDESA+D+R++L P+++++DP++LM ++ SD+E RF LNMNVL G P+V + +L Sbjct: 303 RDESADDIRLILEPRSKNVDPEVLMGMLYRNSDLEVRFSLNMNVLIDGVTPKVCSMKEVL 362 Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV--- 418 + +L HR+EVL RRS RM ID R+E+L+G ++A+LN+D +I IIR +D PK ++ Sbjct: 363 RAFLDHRQEVLLRRSRHRMAKIDHRLEVLEGFIVAFLNLDRVIDIIRYDDDPKAALMRED 422 Query: 419 -------------------SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKE 459 L+E QVDAILN+RLRSLR+LEE ++ E D L+ E+ Sbjct: 423 WGIDHVRATSEADYVSPKPGEGELSEVQVDAILNMRLRSLRRLEEMELVRERDELMLERA 482 Query: 460 KIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEP 519 ++ LL QW +IA ++RE K+ F K + G RRT F E + ++ L +AMI++EP Sbjct: 483 NLEDLLADPALQWAKIAEQLRETKKTFGKDYEGGARRTQFAEAGQVEEVPL-EAMIDREP 541 Query: 520 ITVVISNRGWIRSLKSHSVDLS-ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAG 578 ITVV S GWIR++ H +DL L FK+GD + HA TTDR+L+ +++G+ YT+ A Sbjct: 542 ITVVCSQMGWIRAMTGH-IDLKRELKFKDGDGPRFIFHAETTDRLLVFASNGRFYTVSAA 600 Query: 579 NLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG 638 NL GRG GE ++L++DL + I+ ++ KLLV S GN F+V E +++A TR G Sbjct: 601 NLPGGRGMGEPLRLMVDLPNEAQIIDILIHKPGRKLLVASDAGNGFMVPEDDVLAQTRNG 660 Query: 639 KTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYK----- 693 K L V E + V GDHVAVV +N K L+F +++PEM+RGKGVRLQ Y Sbjct: 661 KQVLNVKGGETAMICKPVDGDHVAVVSQNGKFLVFPTNELPEMTRGKGVRLQKYNMARGR 720 Query: 694 ------DGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRS 747 DGG+SD+ F EGL W S G R E D+ WL KR GVG P GFPR Sbjct: 721 QGTLELDGGLSDITTFNWEEGLKW--SMGGDKTRHEADMTQWLAKRAGVGKKAPYGFPRD 778 Query: 748 GKF 750 KF Sbjct: 779 YKF 781 >gi|288958669|ref|YP_003449010.1| topoisomerase IV subunit A [Azospirillum sp. B510] gi|288910977|dbj|BAI72466.1| topoisomerase IV subunit A [Azospirillum sp. B510] Length = 741 Score = 788 bits (2036), Expect = 0.0, Method: Compositional matrix adjust. Identities = 388/729 (53%), Positives = 533/729 (73%), Gaps = 7/729 (0%) Query: 25 ALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIG 84 AL ERYL+YALSTI R++PD+RDG KPVHRR++ AMS++ L+ KKSAR+VG+VIG Sbjct: 18 ALGERYLSYALSTIMSRSLPDVRDGLKPVHRRLLFAMSQLRLEPTTPPKKSARVVGDVIG 77 Query: 85 KLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELIL 144 K HPHGD SVYD+LVRLAQ F RYPL+ GQGNFGNIDGD+AAA RYTEAR+T+VA+ +L Sbjct: 78 KFHPHGDSSVYDALVRLAQDFSVRYPLVDGQGNFGNIDGDNAAAMRYTEARLTEVAKALL 137 Query: 145 QGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAAL 204 +G+DEDAVDFR TY+ + EP V P+ FPNLLANG+SGIAVGMAT+IP HNV EIC+A Sbjct: 138 EGIDEDAVDFRPTYDGDGEEPAVLPANFPNLLANGSSGIAVGMATNIPPHNVGEICDALR 197 Query: 205 ALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRG 264 LI + + IE L+ ++ GPDFPTGG++VESR+++VE+YR GRG FR+RARW VE++ +G Sbjct: 198 HLIKHRDAPIETLVGFMPGPDFPTGGVLVESRQNVVEAYRTGRGAFRLRARWEVEKLAQG 257 Query: 265 SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDL 324 +W IVVTE+PYQVQK+RL+EKIAEL++AK++ LL+D+RDESAEDVR+VL PK+R++DP++ Sbjct: 258 TWQIVVTEMPYQVQKARLVEKIAELLLAKKLILLDDVRDESAEDVRLVLVPKSRNVDPEV 317 Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384 LM S+F +D+E RF LNMNVL VP+VM L +L+ +L HR EVL RRS+ R+ ID Sbjct: 318 LMASLFQATDLEIRFSLNMNVLGADHVPRVMNLREVLQAFLDHRHEVLVRRSNHRLTQID 377 Query: 385 RRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEE 444 R+E+L G L AYLN+DE+I IIR ED+PK ++ F+LT+ Q DAILN+RLR+LRKLEE Sbjct: 378 HRLEVLGGYLAAYLNLDEVIRIIREEDEPKQELIRAFTLTDVQADAILNMRLRNLRKLEE 437 Query: 445 YQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSR 504 +I+ E + L EK + LL +W +IA + E+K+ F LG+RRT + Sbjct: 438 MEIRREHEALTGEKNGLLELLGDEALRWKRIAEGVAEIKKKFGTGA-LGKRRTDVADAPA 496 Query: 505 ADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA--LHFKEGDSLKIALHAHTTDR 562 + L A++E+EP+TV+ S +GWIR+++ H D A + +K+GD TTD+ Sbjct: 497 VIEVPL-DALVEREPVTVICSAKGWIRTVRGHLTDAEAEDVKYKDGDERGFVERCETTDK 555 Query: 563 ILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGN 622 +L+ +++GK +T+ L GRG GE ++L+IDL ++ DIV F + LLVVS G Sbjct: 556 LLVFASNGKFFTIGVDKLPRGRGFGEPVRLMIDLGNDVDIVDLFRHQPGRTLLVVSEDGR 615 Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMS 682 F VEE+E++A TR GK L + + ++ V+GD VA++G NRK+L+F +DQ+P M+ Sbjct: 616 GFRVEEAEVLAQTRSGKQVLNLEDGKSARICQPVSGDTVAIIGNNRKMLVFPLDQVPVMT 675 Query: 683 RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742 RGKGV+LQ YKD ++DV F + EGL+W + R++N + DL GW+G R G G + P Sbjct: 676 RGKGVQLQKYKDASVADVKTFTLAEGLSW-KNGERNFNVT--DLTGWMGDRAGQGKMPPN 732 Query: 743 GFPRSGKFL 751 GFP++ +F+ Sbjct: 733 GFPKNNRFM 741 >gi|91206120|ref|YP_538475.1| DNA topoisomerase IV subunit A [Rickettsia bellii RML369-C] gi|123084545|sp|Q1RGX8|PARC_RICBR RecName: Full=DNA topoisomerase 4 subunit A; AltName: Full=Topoisomerase IV subunit A gi|91069664|gb|ABE05386.1| Topoisomerase IV subunit A [Rickettsia bellii RML369-C] Length = 736 Score = 788 bits (2034), Expect = 0.0, Method: Compositional matrix adjust. Identities = 376/737 (51%), Positives = 537/737 (72%), Gaps = 4/737 (0%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 E ++ + AL ERYLAYALSTI R++PD+RDG KPVHRR+++AM ++ L+ + +K Sbjct: 3 EAKIENIDFGSALSERYLAYALSTIMSRSLPDVRDGLKPVHRRLLYAMLQLRLEPNSGYK 62 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 K AR+VG+VIGK HPHGD +VYD+LVRLAQ F RYPLI GQGNFG+IDGD+AAA RYTE Sbjct: 63 KCARVVGDVIGKYHPHGDVAVYDTLVRLAQHFSLRYPLIDGQGNFGSIDGDNAAAMRYTE 122 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 +RMT++ L+++ +D+D VDFR TY++ D EPV+ P+ FPNLLANG+ GIAVGMAT+IP Sbjct: 123 SRMTEICTLLMEDIDKDTVDFRSTYDDSDLEPVIMPASFPNLLANGSEGIAVGMATNIPP 182 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E+C+A + LID+P+ I ++ +I GPDFPTGGII++ + I +Y GRG FRVR Sbjct: 183 HNLHELCDALMHLIDHPKAEISDIMNFIKGPDFPTGGIIIDKSDVITSAYMTGRGSFRVR 242 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313 ARW EE+ G + IVVTEIPYQVQKS+LIE+IA L+ K+IPL+ +IRDES + +R+V+ Sbjct: 243 ARWEKEELNYGVYQIVVTEIPYQVQKSKLIEQIAILLKDKKIPLVSNIRDESTDIIRLVI 302 Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373 P++RS DP ++MES+F L+++E+R LNMNV+ VP+VM + +L+E+L+HR+ ++ Sbjct: 303 EPRDRSCDPQIVMESLFKLTNLESRIQLNMNVIGSNNVPKVMNILEVLQEFLSHRQNIIT 362 Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILN 433 RRS++ + I R+EIL+GL IAYLN+DEII IIR ED+PK +M+ RF LTE QV+AILN Sbjct: 363 RRSTYLLNKIKHRLEILEGLRIAYLNLDEIIKIIREEDEPKAIMMQRFQLTEIQVEAILN 422 Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493 RLRSLRKLEE +I +E NL ++ ++ +LN+ K+ W + EI+ V+ F +T +G Sbjct: 423 TRLRSLRKLEEQEIITEHSNLQKQQAILEEILNNPKELWKVVKKEIKAVQAKFGLNTTIG 482 Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKI 553 RRT+F +V+ ++ A I KEPIT++ S GW+RSLK H+ DLS++ +KEGD+ K Sbjct: 483 ARRTSFEQVTLTNQVVDITAFITKEPITIICSKMGWVRSLKGHNNDLSSIKYKEGDAEKF 542 Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613 L A+TTD+IL++S++G+ +TL A N+ G+G GE+I+LL+D+ +N DI VY Sbjct: 543 ILEAYTTDKILIISSEGRFFTLLADNISKGKGTGESIKLLVDIGNN-DITEILVYKPDHL 601 Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIF 673 LL+ SS G F+V +E++A T+ GK + V + V GD VA +GE+RKLL+F Sbjct: 602 LLLASSIGKGFVVNSNEVMAQTKSGKQIMNVPDGHTCIACLPVNGDSVACIGESRKLLVF 661 Query: 674 SIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKR 733 +ID+IPEM +G+GV LQ +K+ + D+ F +GL+W +S G+ + E +++ +LGKR Sbjct: 662 NIDEIPEMKKGQGVTLQKFKNAKLLDIKIFNREDGLSW-NSGGKV--KLEKNIIAFLGKR 718 Query: 734 GGVGSLVPKGFPRSGKF 750 G G L P GFP++ +F Sbjct: 719 GSTGKLPPMGFPKNNRF 735 >gi|157826447|ref|YP_001495511.1| DNA topoisomerase IV subunit A [Rickettsia bellii OSU 85-389] gi|157801751|gb|ABV78474.1| DNA topoisomerase IV subunit A [Rickettsia bellii OSU 85-389] Length = 736 Score = 787 bits (2033), Expect = 0.0, Method: Compositional matrix adjust. Identities = 376/737 (51%), Positives = 537/737 (72%), Gaps = 4/737 (0%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 E ++ + AL ERYLAYALSTI R++PD+RDG KPVHRR+++AM ++ L+ + +K Sbjct: 3 EAKIENIDFGSALSERYLAYALSTIMSRSLPDVRDGLKPVHRRLLYAMLQLRLEPNSGYK 62 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 K AR+VG+VIGK HPHGD +VYD+LVRLAQ F RYPLI GQGNFG+IDGD+AAA RYTE Sbjct: 63 KCARVVGDVIGKYHPHGDVAVYDTLVRLAQHFSLRYPLIDGQGNFGSIDGDNAAAMRYTE 122 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 +RMT++ L+++ +D+D VDFR TY++ D EPV+ P+ FPNLLANG+ GIAVGMAT+IP Sbjct: 123 SRMTEICTLLMEDIDKDTVDFRPTYDDSDLEPVIMPASFPNLLANGSEGIAVGMATNIPP 182 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E+C+A + LID+P+ I ++ +I GPDFPTGGII++ + I +Y GRG FRVR Sbjct: 183 HNLHELCDALMHLIDHPKAEISDIMNFIKGPDFPTGGIIIDKSDVITSAYMTGRGSFRVR 242 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313 ARW EE+ G + IVVTEIPYQVQKS+LIE+IA L+ K+IPL+ +IRDES + +R+V+ Sbjct: 243 ARWEKEELNYGVYQIVVTEIPYQVQKSKLIEQIAILLKDKKIPLVSNIRDESTDIIRLVI 302 Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373 P++RS DP ++MES+F L+++E+R LNMNV+ VP+VM + +L+E+L+HR+ ++ Sbjct: 303 EPRDRSCDPQIVMESLFKLTNLESRIQLNMNVIGSNNVPKVMNILEVLQEFLSHRQNIIT 362 Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILN 433 RRS++ + I R+EIL+GL IAYLN+DEII IIR ED+PK +M+ RF LTE QV+AILN Sbjct: 363 RRSTYLLNKIKHRLEILEGLRIAYLNLDEIIKIIREEDEPKAIMMQRFQLTEIQVEAILN 422 Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493 RLRSLRKLEE +I +E NL ++ ++ +LN+ K+ W + EI+ V+ F +T +G Sbjct: 423 TRLRSLRKLEEQEIITEHSNLQKQQAILEEILNNPKELWKVVKKEIKAVQAKFGLNTTIG 482 Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKI 553 RRT+F +V+ ++ A I KEPIT++ S GW+RSLK H+ DLS++ +KEGD+ K Sbjct: 483 ARRTSFEQVTLTNQVVDITAFITKEPITIICSKMGWVRSLKGHNNDLSSIKYKEGDAEKF 542 Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613 L A+TTD+IL++S++G+ +TL A N+ G+G GE+I+LL+D+ +N DI VY Sbjct: 543 ILEAYTTDKILIISSEGRFFTLLADNISKGKGTGESIKLLVDIGNN-DITEILVYKPDHL 601 Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIF 673 LL+ SS G F+V +E++A T+ GK + V + V GD VA +GE+RKLL+F Sbjct: 602 LLLASSIGKGFVVNSNEVMAQTKSGKQIMNVPDGHTCIACLPVNGDSVACIGESRKLLVF 661 Query: 674 SIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKR 733 +ID+IPEM +G+GV LQ +K+ + D+ F +GL+W +S G+ + E +++ +LGKR Sbjct: 662 NIDEIPEMKKGQGVTLQKFKNAKLLDIKIFNREDGLSW-NSGGKV--KLEKNIIAFLGKR 718 Query: 734 GGVGSLVPKGFPRSGKF 750 G G L P GFP++ +F Sbjct: 719 GSTGKLPPMGFPKNNRF 735 >gi|260432786|ref|ZP_05786757.1| DNA topoisomerase IV, A subunit [Silicibacter lacuscaerulensis ITI-1157] gi|260416614|gb|EEX09873.1| DNA topoisomerase IV, A subunit [Silicibacter lacuscaerulensis ITI-1157] Length = 782 Score = 785 bits (2026), Expect = 0.0, Method: Compositional matrix adjust. Identities = 393/766 (51%), Positives = 518/766 (67%), Gaps = 38/766 (4%) Query: 19 AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78 A LR A+ ERYL YALSTI RA+PD RDG KPVHRRI++AM E+ L F+KSA+I Sbjct: 20 AEPLRRAIGERYLTYALSTIMHRALPDARDGLKPVHRRILYAMRELRLSSSGGFRKSAKI 79 Query: 79 VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138 G+V+G HPHGD ++YD++ RLAQ F RYPL+ GQGNFGNIDGD+ AA RYTEARMT Sbjct: 80 SGDVMGNYHPHGDAAIYDAMARLAQDFNVRYPLVDGQGNFGNIDGDNPAASRYTEARMTI 139 Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198 VAE +L+G+DEDAVDFRD Y+ EPVV P+ FPNLLANG SGIAVGMAT+IP HN+ E Sbjct: 140 VAEALLEGLDEDAVDFRDNYDGTLREPVVLPATFPNLLANGASGIAVGMATNIPPHNIAE 199 Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258 +C+A L LI P+ + LL Y+ GPDFPTGG+IVE ESI ++YR GRG FR+R ++ + Sbjct: 200 LCDACLHLIKTPDARDDTLLNYVPGPDFPTGGVIVEPPESIAQAYRTGRGSFRLRCKYEI 259 Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318 E++GRG W IVVTEIPYQVQKS+LIEK+AELI K+IP+L D+RDESA+D+R++L P+++ Sbjct: 260 EDLGRGQWQIVVTEIPYQVQKSKLIEKLAELIQTKKIPILGDVRDESADDIRLILEPRSK 319 Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378 ++DP++LM ++ SD+E RF LNMNVL G P+V + +L+ +L HR+EVL RRS Sbjct: 320 NVDPEVLMNMLYRNSDLELRFSLNMNVLIDGVTPKVCSMKEVLRAFLDHRQEVLLRRSRH 379 Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV-------------------- 418 RM ID R+E+L+G ++A+LN+D +I IIR +D PK ++ Sbjct: 380 RMAKIDHRLEVLEGFIVAFLNLDRVIDIIRYDDDPKAALMRENWGIDHVRATSEADYVSP 439 Query: 419 --SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476 L+E QVDAILN+RLRSLR+LEE ++ E D L+ E+ ++ LL QW IA Sbjct: 440 KPGEGELSEVQVDAILNMRLRSLRRLEEMELVRERDALMEERAGLEDLLADEGLQWASIA 499 Query: 477 CEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSH 536 +++E K+ F K + G RRT F E ++ L +AMI++EPITVV S GWIR++ H Sbjct: 500 EQLKETKKKFGKDYEGGARRTRFAEAGAVEEVPL-EAMIDREPITVVCSQMGWIRAMTGH 558 Query: 537 SVDLS-ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLID 595 +DL+ L FK+GD + HA TTDR+L+ +++G+ YT+ A NL GRG GE ++L++D Sbjct: 559 -IDLNRELKFKDGDGPRFIFHAETTDRLLIFASNGRVYTVSAANLPGGRGMGEPLRLMVD 617 Query: 596 LNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655 L + IV ++ KLLV S GN FIV E E++A TR GK L V +E+ + Sbjct: 618 LPNEAQIVDILIHKPGRKLLVASDAGNGFIVPEDEVLAQTRNGKQVLNVKDDERAVICKP 677 Query: 656 VTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYK-----------DGGISDVICFK 704 V GDHVAVV +N K L+F + ++PEM+RGKGVRLQ Y DGG+SD+ F Sbjct: 678 VAGDHVAVVSQNGKFLVFPVSELPEMTRGKGVRLQKYNMARGRQGTLELDGGLSDLTTFN 737 Query: 705 ICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750 EGL W S G R E D+ WL KR VG P GFPR KF Sbjct: 738 WEEGLKW--SMGGDKTRHEPDMTPWLAKRASVGKKPPYGFPRDYKF 781 >gi|259416258|ref|ZP_05740178.1| DNA topoisomerase IV, A subunit [Silicibacter sp. TrichCH4B] gi|259347697|gb|EEW59474.1| DNA topoisomerase IV, A subunit [Silicibacter sp. TrichCH4B] Length = 782 Score = 783 bits (2022), Expect = 0.0, Method: Compositional matrix adjust. Identities = 392/763 (51%), Positives = 522/763 (68%), Gaps = 38/763 (4%) Query: 22 LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81 LR A+ ERYL YALSTI RA+PD RDG KPVHRRI++AM+ + L F KSA+I G+ Sbjct: 23 LRRAIGERYLTYALSTIMHRALPDARDGLKPVHRRILYAMNRLRLSSSGGFLKSAKISGD 82 Query: 82 VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE 141 +G HPHGD ++YD++ RLAQ F RYPL+ GQGNFGNIDGD+ AA RYTEARMT +AE Sbjct: 83 TMGDFHPHGDAAIYDAMARLAQDFAVRYPLVDGQGNFGNIDGDNPAASRYTEARMTFIAE 142 Query: 142 LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICE 201 +L+G+ EDAVDFRD Y+ EP V P+ FPN+LANG+SGIAVGMAT+IP HN+ E+ + Sbjct: 143 AMLEGLGEDAVDFRDNYDGRLQEPSVLPATFPNILANGSSGIAVGMATNIPPHNISELID 202 Query: 202 AALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEV 261 A + LI P + + LL+Y+ GPDFPTGG IVE +E+I ++YR GRG FR+RA+ +E++ Sbjct: 203 ACIHLIKAPNAADDTLLQYVPGPDFPTGGTIVEPKENIAQAYRTGRGSFRLRAKHEIEDL 262 Query: 262 GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLD 321 GRG W +VVTEIPYQVQKS+LIEKIAELI K++P+L D+RDESAED+RI+L PK++++D Sbjct: 263 GRGQWQVVVTEIPYQVQKSKLIEKIAELIQTKKVPILADVRDESAEDIRIILEPKSKNVD 322 Query: 322 PDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQ 381 P++LM ++ SD+E RF LNMNVL G P+V + +L+ +L HRR+VL RRS RM Sbjct: 323 PEVLMGLMYRNSDLEVRFSLNMNVLIDGVTPKVCSMKEVLRAFLDHRRDVLQRRSRHRMA 382 Query: 382 AIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR---------FS---------- 422 ID R+E+L G +IA+LN+D +I IIR +D PK ++ F+ Sbjct: 383 KIDHRLEVLDGFIIAFLNLDRVIDIIRYDDDPKAALMRENWDREHPRAFTEAEYVTPAAG 442 Query: 423 ---LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479 L+E Q +AILN+RLRSLRKLEE ++ E D L E+ + LL+S QW +I ++ Sbjct: 443 DGELSEVQAEAILNMRLRSLRKLEEIELTRERDALREERAGLAELLDSEDLQWKKITEQL 502 Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539 RE K+ F K + G RRT F E + L +AMI++EPITVV S GWIR++ H +D Sbjct: 503 RETKKQFGKDYEGGSRRTQFAEAGEVEDVPL-EAMIDREPITVVCSQMGWIRAMTGH-ID 560 Query: 540 LS-ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNH 598 L+ L FK+GD + HA TTDR+L+ ++G+ YTL A NL GRG GE ++L++DL + Sbjct: 561 LNRELKFKDGDGPRFIFHAETTDRLLVFGSNGRFYTLSAANLPGGRGMGEPLRLMVDLPN 620 Query: 599 NQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG 658 +IV F+++ +LLV S GN F+ E EI+A TR GK L V +E+ K+ + V+G Sbjct: 621 EVEIVDLFIHNPEGRLLVASDAGNGFVCAEKEIVAQTRGGKQVLNVKDDERAKICIPVSG 680 Query: 659 DHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYK-----------DGGISDVICFKICE 707 DHVAVV EN K L+FSI+++PE++RGKGVRLQ Y DGG++DV F E Sbjct: 681 DHVAVVSENGKFLVFSIEEMPELTRGKGVRLQKYNMARGRQGSLELDGGLADVTTFNWDE 740 Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750 GL W G++ R E DL WLGKR GVG P GFP+ KF Sbjct: 741 GLQWEMGGGKT--RHETDLSQWLGKRAGVGKRPPYGFPKDYKF 781 >gi|126734750|ref|ZP_01750496.1| DNA topoisomerase IV subunit A [Roseobacter sp. CCS2] gi|126715305|gb|EBA12170.1| DNA topoisomerase IV subunit A [Roseobacter sp. CCS2] Length = 780 Score = 783 bits (2021), Expect = 0.0, Method: Compositional matrix adjust. Identities = 390/781 (49%), Positives = 535/781 (68%), Gaps = 43/781 (5%) Query: 8 NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67 +S+T + N +LR A+ +RYL YALSTI RA+PD RDG KPVHRRI++AMS + L Sbjct: 4 DSDTGLGPNDVTETLRRAIGDRYLTYALSTIMHRALPDARDGLKPVHRRILYAMSRLRLS 63 Query: 68 FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAA 127 F KSA+I G+ +G HPHGD ++YD++ RLAQ F RYPL+ GQGNFGNIDGD+ A Sbjct: 64 PSGGFLKSAKISGDTMGDFHPHGDAAIYDAMARLAQDFNVRYPLVDGQGNFGNIDGDNPA 123 Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187 A RYTEARMT AE +L+G+ ED+VDFRD Y+ +EP V P+ FPNLLANG+SGIAVGM Sbjct: 124 ASRYTEARMTAAAEALLEGLSEDSVDFRDNYDGRLTEPAVLPATFPNLLANGSSGIAVGM 183 Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247 AT+IP HN+ E+ +A L LI P+ + LL YI GPDFPTGG IVE E+I E+YR GR Sbjct: 184 ATNIPPHNLHELIDACLHLIKTPDARDDTLLNYIPGPDFPTGGTIVEPAENIAEAYRTGR 243 Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307 G FR+RA+W VE++GRG+W IVVTEIPYQVQKS+LIEK+AE+I K++PLL D+RDESA+ Sbjct: 244 GSFRLRAKWEVEDLGRGTWQIVVTEIPYQVQKSKLIEKLAEVIQLKKVPLLADVRDESAD 303 Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367 D+R+VL P+ +++DP+++M +F SD+ETRF LNMNVL G P+V L +L+ +L H Sbjct: 304 DIRVVLEPRAKTVDPEVMMGMLFRNSDLETRFSLNMNVLIDGLTPKVCSLKEVLRAFLEH 363 Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV--------- 418 RR+VL RRS +R++ ID R+E+L+G +IA+L++D +I IIR +D PK ++ Sbjct: 364 RRDVLVRRSKYRLEKIDHRLEVLEGFIIAFLHLDRVIDIIRYDDDPKKALMIEDWAQDHV 423 Query: 419 -----------------SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKI 461 SL+E Q +AILN+RLRSLR+LEE ++ +E D L+ E+ I Sbjct: 424 RATSEADYRSPIVPGADPEVSLSEVQAEAILNMRLRSLRRLEELELIAERDALMEERAGI 483 Query: 462 DSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPIT 521 + LL S QW +IA ++RE ++IF + ++ G RRT F E + + L +AMIE+EPIT Sbjct: 484 EDLLESDDLQWAKIAEQLRETRKIFGRDSEGGARRTQFAEAAEVVEVPL-EAMIEREPIT 542 Query: 522 VVISNRGWIRSLKSHSVDLS-ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL 580 VV S GW+R++ H +DL+ L FK+GD + HA TTD++L+ +G+ YT+ A NL Sbjct: 543 VVCSQMGWVRAMTGH-IDLTRELKFKDGDGPRFIFHAETTDKLLVFGANGRFYTVGAANL 601 Query: 581 LSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKT 640 GRG GE ++L+IDL ++ +IV ++ KLLV S++GN F+V E E++A TR GK Sbjct: 602 PGGRGMGEPLRLMIDLPNDVEIVDFLIHKPGEKLLVASAEGNGFVVPEEEVVAQTRSGKQ 661 Query: 641 FLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYK------- 693 L V + K+ +V GDHVAVV EN K L+F + ++PEM+RGKGVR+Q YK Sbjct: 662 VLNV-KDTIAKVCHRVVGDHVAVVSENAKFLVFEVGELPEMNRGKGVRIQKYKKASGRQG 720 Query: 694 ----DGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGK 749 DGG+SD+ F +GL+W G++ R+E D+ W G R GVG P GFP++ + Sbjct: 721 MLELDGGLSDITTFTWDDGLSWAMGGGKT--RTEPDMTDWKGARAGVGKRPPYGFPKNNR 778 Query: 750 F 750 F Sbjct: 779 F 779 >gi|296284413|ref|ZP_06862411.1| DNA topoisomerase IV subunit A [Citromicrobium bathyomarinum JL354] Length = 764 Score = 781 bits (2017), Expect = 0.0, Method: Compositional matrix adjust. Identities = 374/742 (50%), Positives = 531/742 (71%), Gaps = 18/742 (2%) Query: 25 ALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIG 84 AL ERYL YALSTI R++PDLRDG KPVHRR++ AM ++ L +A+KKSAR+VGEV+G Sbjct: 25 ALSERYLVYALSTITARSLPDLRDGLKPVHRRLLWAMRQLRLSPDSAYKKSARVVGEVLG 84 Query: 85 KLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELIL 144 K HPHGD +VYD++VRLAQPF RYPL+ GQGNFGNIDGD+AAA RYTEAR+T+ A ++ Sbjct: 85 KYHPHGDTAVYDAMVRLAQPFALRYPLVEGQGNFGNIDGDNAAAARYTEARLTRTAISLM 144 Query: 145 QGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAAL 204 G+DE VDF TYN E+ EPV+FP FPNLLANG SGIAVGMAT+IPSHNV E+ EA L Sbjct: 145 AGLDEGTVDFVPTYNNEEEEPVIFPGLFPNLLANGASGIAVGMATNIPSHNVDEVIEATL 204 Query: 205 ALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW-------- 256 +I+NP + +L++ + GPD TGG+IV+S E+I +Y GRG FR+RAR+ Sbjct: 205 EVIENPAVEHARLMQIMQGPDLATGGLIVDSPETISAAYETGRGSFRIRARFHAAEAESA 264 Query: 257 -----CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311 +E +G G W ++++EIPYQV K +LIE+IA++I K++P+LED+RDES E +RI Sbjct: 265 ADRDAGIERLGGGQWQLIISEIPYQVPKGKLIEQIAQVIADKKVPILEDVRDESDEQIRI 324 Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371 VL P++R++DP+LL ES++ L+D+ETRF LNMNVL R P VM L +L+ W+A + ++ Sbjct: 325 VLVPRSRNVDPELLKESLYRLTDLETRFGLNMNVLDATRTPMVMGLKELLQNWIASQIDI 384 Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431 L RR+ R+ I R+E+L+G +IA+LN+D +I IIR ED+PKPVM++ F LT+ Q +AI Sbjct: 385 LQRRTRHRLAKIADRLELLEGYIIAFLNLDRVIEIIRTEDEPKPVMMAEFGLTDRQTEAI 444 Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491 LN+RLRSLRKLEE Q++ E D+LL E++++ LL S +Q ++ ++ +++ + K T Sbjct: 445 LNMRLRSLRKLEEMQLRQEKDDLLKEQDELQKLLESPVRQRTRLKRDLNALRKEYGKDTA 504 Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA-LHFKEGDS 550 LG RRTT E + ++ AMIEKEP TV++S RGWIR+ K H+ DLS FKEGD Sbjct: 505 LGARRTTIDEAEPTVEFSM-DAMIEKEPTTVILSARGWIRAAKGHA-DLSQEWKFKEGDE 562 Query: 551 LKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDS 610 L A HA TTD++L+ + DG+ YTL A L RG GE ++ ++D++++ IV A+ + Sbjct: 563 LAFAFHAQTTDKLLIATDDGRFYTLGADKLPGARGFGEPVRTMVDIDNSAHIVFAWAHKP 622 Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV--TGDHVAVVGENR 668 +LL+ S+ G F+++ +++A TRKG+ + + + K+ V + DHVAVVG+NR Sbjct: 623 GERLLLASTLGKGFVIKSDDLLAETRKGRAVMTLKGDAKLARVAHIGEGHDHVAVVGDNR 682 Query: 669 KLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLG 728 KL++F+++++PEMSRG+GV+LQ Y+DGG++DV F++ EGL+W R+E ++ Sbjct: 683 KLVVFNLEEMPEMSRGQGVQLQRYRDGGMADVTTFRLEEGLSWQMGGTGERTRTEMEMWQ 742 Query: 729 WLGKRGGVGSLVPKGFPRSGKF 750 W RGG G + P+GFPR +F Sbjct: 743 WKVARGGAGRMPPQGFPRDNRF 764 >gi|315499941|ref|YP_004088744.1| DNA topoisomerase iv, a subunit [Asticcacaulis excentricus CB 48] gi|315417953|gb|ADU14593.1| DNA topoisomerase IV, A subunit [Asticcacaulis excentricus CB 48] Length = 738 Score = 779 bits (2011), Expect = 0.0, Method: Compositional matrix adjust. Identities = 376/720 (52%), Positives = 510/720 (70%), Gaps = 8/720 (1%) Query: 25 ALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIG 84 AL RYLAYALSTI RA+PD+RDG KPVHRR+++AM M L+ AA +KSA++VGEV+G Sbjct: 21 ALSRRYLAYALSTIMHRALPDVRDGLKPVHRRVLYAMHNMRLNPQAAARKSAKVVGEVMG 80 Query: 85 KLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELIL 144 HPHGDQS+YD+LVR+AQ F QRYP++ GQGNFGNIDGDSAAA RYTE +MT A L+L Sbjct: 81 NFHPHGDQSIYDALVRMAQWFAQRYPMVDGQGNFGNIDGDSAAAMRYTECKMTTAAMLLL 140 Query: 145 QGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAAL 204 G+DE+AVDFR TY+ +D EPVV P+ FPNLLANG +GIAVGMATSIP HNV E+ +A Sbjct: 141 DGIDENAVDFRPTYDGQDEEPVVLPAAFPNLLANGATGIAVGMATSIPPHNVAELIDACK 200 Query: 205 ALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRG 264 LI P L+ I GPDFPTGGI VE RE+I E+Y GRG RVRAR+ VE++GRG Sbjct: 201 LLIAEPNTDTNGLMAIIPGPDFPTGGICVERREAIYEAYETGRGSVRVRARYEVEDLGRG 260 Query: 265 SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDL 324 +W I+V+EIPYQVQKSRLIE++A+LI AK+ PLL D+RDES E+VR++L PK R++DP++ Sbjct: 261 AWRILVSEIPYQVQKSRLIEQLADLIEAKKAPLLGDVRDESDEEVRLILEPKTRNIDPEV 320 Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384 LMES+F +SD+ETRF NMNVL P+VM L IL +L HRREVL R+S +R+ I+ Sbjct: 321 LMESLFKISDLETRFAFNMNVLDKTGTPRVMGLKTILTSFLDHRREVLIRQSQWRLDKIE 380 Query: 385 RRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEE 444 +R+ +L GL+IA+LN+DE+I IIR ++ PK +++RF LTE QVD IL+ RLR L +LEE Sbjct: 381 KRLHVLDGLMIAFLNLDEVIRIIREDETPKQTLMARFELTEVQVDYILDTRLRQLARLEE 440 Query: 445 YQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSR 504 IK E D L E++ + SLL S K+QW +I ++ EV++ L RRTTF E + Sbjct: 441 MAIKGEHDKLSKERDGLLSLLGSEKKQWKRIDEQLTEVRKQL-----LSARRTTFAEAPQ 495 Query: 505 ADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRIL 564 + ++ + KE +TV++S RGWIR+ K D S L FKEGD+L + + TD++L Sbjct: 496 GVEVAAIESYLPKEALTVILSERGWIRATKGRVDDPSELKFKEGDNLGFLVPGYNTDKLL 555 Query: 565 LLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAF 624 ++++DG+ +TL L SGRGHGE +QL++++ N IV F++ K L+VS G F Sbjct: 556 IMTSDGRFFTLGCDKLPSGRGHGEPLQLMLEMEENTRIVNVFMFTPGAKRLMVSKNGYGF 615 Query: 625 IVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRG 684 ++ E + + N + GK+ L E + + VTGDHV ++GEN K+L++ + ++PEM+RG Sbjct: 616 VMNEEDAVGNKKAGKSVLNADGTEAF-VALPVTGDHVVILGENNKVLVYPVSELPEMARG 674 Query: 685 KGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGF 744 KGV+LQ YKDGG+ D+ F + W D +G++ R D ++GKR VG + P+G Sbjct: 675 KGVKLQGYKDGGVKDIAIFDQAGPVQWFDGSGKA--RDFKDWKDFVGKRASVGKMAPRGL 732 >gi|157964133|ref|YP_001498957.1| DNA topoisomerase IV subunit A [Rickettsia massiliae MTU5] gi|157843909|gb|ABV84410.1| Topoisomerase IV subunit A [Rickettsia massiliae MTU5] Length = 737 Score = 779 bits (2011), Expect = 0.0, Method: Compositional matrix adjust. Identities = 376/739 (50%), Positives = 533/739 (72%), Gaps = 4/739 (0%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 E ++ + AL ERYLAYALSTI R++PD+RDG KPVHRR+++AM ++ L+ + +K Sbjct: 3 EAKIENIDFGNALSERYLAYALSTIMSRSLPDVRDGLKPVHRRLLYAMLQLRLEPNSGYK 62 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 K AR+VG+VIGK HPHGD +VYD+LVRLAQ F+ RYPLI GQGNFG+IDGD+AAA RYTE Sbjct: 63 KCARVVGDVIGKYHPHGDVAVYDTLVRLAQHFLLRYPLIDGQGNFGSIDGDNAAAMRYTE 122 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 +RMT + L+++ +D+D VDFR TY++ D EPV+ P+ FPNLLANG+ GIAVGMAT+IP Sbjct: 123 SRMTDICTLLMEDIDKDTVDFRPTYDDADLEPVIMPAGFPNLLANGSEGIAVGMATNIPP 182 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E+C+A + LID+P+ I ++ +I GPDFPTGGII++ E I +Y GRG RVR Sbjct: 183 HNLHELCDALIHLIDHPKAEINDIMNFIKGPDFPTGGIIIDKAEVINAAYTTGRGSLRVR 242 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313 +RW EE+ G++ IVVTEIPYQVQKS+LIE+IA L+ K+IPL+ +IRDES + +R+V+ Sbjct: 243 SRWEKEELSYGTYQIVVTEIPYQVQKSKLIEQIAILLKDKKIPLVSNIRDESTDIIRLVI 302 Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373 P++R DP ++MES+F L+++E+R LNMNV+ VP+VM + IL+E+L HR+ ++ Sbjct: 303 EPRDRGCDPQIVMESLFKLTNLESRIQLNMNVIGSNNVPRVMNILEILQEFLDHRQNIVT 362 Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILN 433 RRS++ + I R+EILKGL IAYLN+DEII IIR ED+PK +M+ RF LTE QV+AI N Sbjct: 363 RRSTYLLNKIKHRLEILKGLRIAYLNLDEIIKIIREEDEPKAIMMERFKLTEIQVEAIFN 422 Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493 RLRSLRKLEE +I +E NL ++ ++ +LN+ K+ W + EIR V+ F +T +G Sbjct: 423 TRLRSLRKLEEQEIINEHSNLQKQQAILEEILNNPKELWKVVKKEIRTVQTKFGLNTVIG 482 Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKI 553 RRT+F EV+ ++ A I KEPIT++ S GW+RSLK H+ DLS + +KEGD+ K Sbjct: 483 ARRTSFEEVTLTNQVVDITAFITKEPITIICSKMGWVRSLKGHNTDLSTIKYKEGDAEKF 542 Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613 L A+TTD+IL++S++G+ +TL A N+ G+G GE+I+LL+D+ +N DI VY Sbjct: 543 ILEAYTTDKILIVSSEGRFFTLLADNISKGKGTGESIKLLVDIGNN-DITNILVYKPDQL 601 Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIF 673 LL+ SS G F+V +E++A T+ GK + V + V GD +A +GE+RKLL+F Sbjct: 602 LLLASSVGKGFLVNSNEVMAQTKTGKQIMNVPDGHVCIACLPVNGDSIACIGESRKLLVF 661 Query: 674 SIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKR 733 +ID+IPEM +G+GV LQ +K+ + D+ F +GL W ++ G+ + E +++ +LGKR Sbjct: 662 NIDEIPEMKKGQGVTLQKFKNAKLLDIKIFNKEDGLGW-NNNGKV--KLEKNIVAFLGKR 718 Query: 734 GGVGSLVPKGFPRSGKFLS 752 G G L P GFP++ +F S Sbjct: 719 GSTGKLPPMGFPKNNRFSS 737 >gi|254464900|ref|ZP_05078311.1| DNA topoisomerase IV, A subunit [Rhodobacterales bacterium Y4I] gi|206685808|gb|EDZ46290.1| DNA topoisomerase IV, A subunit [Rhodobacterales bacterium Y4I] Length = 782 Score = 778 bits (2008), Expect = 0.0, Method: Compositional matrix adjust. Identities = 391/763 (51%), Positives = 522/763 (68%), Gaps = 38/763 (4%) Query: 22 LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81 LR A+ ERYL YALSTI RA+PD RDG KPVHRRI++AM+ + L F KSA+I G+ Sbjct: 23 LRRAIGERYLTYALSTIMHRALPDARDGLKPVHRRILYAMNRLRLSSTGGFLKSAKISGD 82 Query: 82 VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE 141 +G HPHGD ++YD++ RLAQ F RYPL+ GQGNFGNIDGD+ AA RYTEARMT VAE Sbjct: 83 TMGDFHPHGDAAIYDAMARLAQDFNVRYPLVDGQGNFGNIDGDNPAASRYTEARMTFVAE 142 Query: 142 LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICE 201 +L G++E+AVDFRD Y+ +EP V P+ FPN+LANG +GIAVGMAT+IP HN+ E+ + Sbjct: 143 AMLDGLNENAVDFRDNYDGRLTEPAVLPATFPNILANGAAGIAVGMATNIPPHNIAELID 202 Query: 202 AALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEV 261 A L LI P+ + LL Y+ GPDFPTGGIIVE +E+I ++Y GRG FR+R + VE++ Sbjct: 203 ACLHLIKTPDARDDTLLNYVPGPDFPTGGIIVEPKENIAKAYSTGRGSFRLRCKHEVEDL 262 Query: 262 GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLD 321 GRG W IVVTEIPYQVQKS+LIEKIAELI K++P+L D+RDESA+D+RIVL PK++++D Sbjct: 263 GRGQWQIVVTEIPYQVQKSKLIEKIAELIQTKKVPILADVRDESADDIRIVLEPKSKNVD 322 Query: 322 PDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQ 381 P++LM +F SD+E RF LNMNVL G P+V + +L+ +L HRR+VL RRS RM+ Sbjct: 323 PEVLMNMMFRNSDLEIRFSLNMNVLIDGVTPKVCSMKEVLRAFLDHRRDVLQRRSRHRME 382 Query: 382 AIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR--------------------- 420 ID R+E+L+G +IA+LN+D +I IIR ++ PK ++ Sbjct: 383 KIDHRLEVLEGFIIAFLNLDRVIDIIRYDEDPKAALIREDWSKDHPRALTEADYITPARG 442 Query: 421 -FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479 LTE Q +AILN+RLRSLRKLEE ++ E D L E+ + LL S + QW++I+ ++ Sbjct: 443 VGELTEVQAEAILNMRLRSLRKLEEIELTRERDALREERAGLVELLASEELQWSRISEQL 502 Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539 +E K+ F K + G RRT F E A+ L +AMI++EPITVV S GWIR++ H +D Sbjct: 503 KETKKQFGKDYEGGARRTLFAEAGEAEDVPL-EAMIDREPITVVCSQMGWIRAMTGH-ID 560 Query: 540 LS-ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNH 598 LS L FK+GD+ + HA TTD++L+ ++G+ YTL A NL GRG GE ++L++DL + Sbjct: 561 LSRELKFKDGDAPRFIFHAETTDKLLVFGSNGRFYTLSAANLPGGRGMGEPLRLMVDLPN 620 Query: 599 NQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG 658 +IV +++ +LLV S GN FI E EI+A TR GK L V +E+ K+ + V G Sbjct: 621 EAEIVDLLIHNPEGRLLVASDAGNGFICAEKEIVAQTRSGKQVLNVKDDERAKVCIPVEG 680 Query: 659 DHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYK-----------DGGISDVICFKICE 707 DHVAVV EN K L+F+++++PE++RGKGVRLQ Y DGG+SD+ F+ E Sbjct: 681 DHVAVVSENGKFLVFAVEEMPELTRGKGVRLQKYNMARGKQGSLELDGGLSDITTFRWDE 740 Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750 GL W G++ R DL WLGKR VG P GFPRS KF Sbjct: 741 GLKWEMGGGKT--RHAADLSEWLGKRASVGKRPPHGFPRSYKF 781 >gi|157825225|ref|YP_001492945.1| DNA topoisomerase IV subunit A [Rickettsia akari str. Hartford] gi|157799183|gb|ABV74437.1| DNA topoisomerase IV subunit A [Rickettsia akari str. Hartford] Length = 737 Score = 777 bits (2007), Expect = 0.0, Method: Compositional matrix adjust. Identities = 372/739 (50%), Positives = 534/739 (72%), Gaps = 4/739 (0%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 E ++ + AL ERYLAYALSTI R++PD+RDG KPVHRR+++AM ++ L+ + +K Sbjct: 3 EAKIENIDFGNALSERYLAYALSTIMSRSLPDVRDGLKPVHRRLLYAMLQLKLEPNSGYK 62 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 K AR+VG+VIGK HPHGD +VYD+LVRLAQ F RYPLI GQGNFG+IDGD+AAA RYTE Sbjct: 63 KCARVVGDVIGKYHPHGDVAVYDTLVRLAQHFSLRYPLIDGQGNFGSIDGDNAAAMRYTE 122 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 +RMT++ L++ +D+D VDFR TY++ D EP++ P+ FPNLLANG+ GIAVGMAT+IP Sbjct: 123 SRMTEICTLLMVDIDKDTVDFRPTYDDSDLEPIIMPASFPNLLANGSEGIAVGMATNIPP 182 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E+C+A + LID+P I ++ +I GPDFPTGGII++ E I +Y GRG FRVR Sbjct: 183 HNLHELCDALIHLIDHPNAEINDIMNFIKGPDFPTGGIIIDKAEVINAAYNTGRGSFRVR 242 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313 +RW E + G++ IVVTEIPYQVQKS+LIE++A L+ K+IPL+ +IRDES + +R+V+ Sbjct: 243 SRWEKEALSYGTYQIVVTEIPYQVQKSKLIEQVAILLKDKKIPLVSNIRDESTDIIRLVI 302 Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373 P++RS DP ++MES+F L+++E+R LNMNV+ VP+VM + +L+E+LAHR+ ++ Sbjct: 303 EPRDRSCDPQIVMESLFKLTNLESRIQLNMNVIGSNNVPRVMNILEVLQEFLAHRQNIVT 362 Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILN 433 RRS++ + I R+EIL GL IAYLN+DEII IIR ED+PK +M+ RF LTE QV+AILN Sbjct: 363 RRSTYLVNKIKHRLEILAGLRIAYLNLDEIIKIIREEDEPKAIMMERFKLTEIQVEAILN 422 Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493 RLRSLRKLEE++I +E NL ++ ++ +LN+ K+ W + EI+ V+ F +T +G Sbjct: 423 TRLRSLRKLEEHEIINEHSNLQKQQAILEEILNNPKELWKIVKKEIKAVQMQFGLNTVIG 482 Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKI 553 RRT+F EV+ ++ A + KEPIT++ S GW+RSLK H+ DLS + +KEGD+ K Sbjct: 483 DRRTSFEEVTLTNQVVDITAFVTKEPITIICSKMGWVRSLKGHNTDLSNIKYKEGDAEKF 542 Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613 L A+TTD+IL++S++G+ +TL A N+ G+G GE+I+LL+D+ +N DI V+ Sbjct: 543 ILEAYTTDKILIVSSEGRFFTLLADNIPKGKGTGESIKLLVDIGNN-DITNILVHKPDQL 601 Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIF 673 LL+ SS G F+V +E+IA T+ GK + V + V GD VA +GE+RKLL+F Sbjct: 602 LLLASSVGKGFLVNSNEVIAQTKTGKQVMNVPDGHACIACLHVAGDAVACIGESRKLLVF 661 Query: 674 SIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKR 733 ++D+IPEM +G+GV LQ +K+ + D+ F +GL W ++ G+ + E +++ +LG+R Sbjct: 662 NVDEIPEMKKGQGVTLQKFKNAKLLDIKIFNKEDGLCW-NNNGKV--KLEKNIIAFLGQR 718 Query: 734 GGVGSLVPKGFPRSGKFLS 752 G G L P GFP++ +F S Sbjct: 719 GSTGKLPPMGFPKNNRFSS 737 >gi|94498683|ref|ZP_01305234.1| DNA topoisomerase IV, A subunit [Sphingomonas sp. SKA58] gi|94421846|gb|EAT06896.1| DNA topoisomerase IV, A subunit [Sphingomonas sp. SKA58] Length = 787 Score = 776 bits (2005), Expect = 0.0, Method: Compositional matrix adjust. Identities = 383/746 (51%), Positives = 519/746 (69%), Gaps = 22/746 (2%) Query: 25 ALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA------------- 71 AL +RYL YALSTI R++PDLRDG KPVHRR++ AM + ++ G A Sbjct: 44 ALSQRYLVYALSTITARSLPDLRDGLKPVHRRLLWAMRLLRMEPGGASADVLTANPARNT 103 Query: 72 --FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129 +KK AR+VG+VIGK HPHGD SVYD++VRLAQ F R PL+ GQGNFGNIDGD+AAA Sbjct: 104 TAYKKCARVVGDVIGKYHPHGDASVYDAMVRLAQDFSLRTPLVDGQGNFGNIDGDNAAAM 163 Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189 RYTEAR+TQ A ++ G+DE VDFR TYN ED EP VFP FPNLLANG SGIAVGMAT Sbjct: 164 RYTEARLTQAAADLMAGLDEGTVDFRPTYNGEDEEPEVFPGLFPNLLANGASGIAVGMAT 223 Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249 SIP HNV E+ +AA LID+P+ L++ + GPDFPTGG++V+S I E+Y GRG Sbjct: 224 SIPPHNVAELIDAANLLIDDPDADHGALMQIVRGPDFPTGGVLVDSPSIIAEAYATGRGA 283 Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309 FR RARW E+ GRG+W VVTEIPYQVQKS+LIE+IA LI K++P+L D+RDES D+ Sbjct: 284 FRTRARWHKEDHGRGTWIAVVTEIPYQVQKSKLIEQIAALINDKKLPILADVRDESDADI 343 Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369 RIV+ P+ R++D +LM+S+F L+D+E RFPLN+NVL P+V+ L +L EWL H+ Sbjct: 344 RIVIEPRARTVDDQVLMDSLFRLTDLENRFPLNLNVLDSTHTPRVLGLKPLLVEWLRHQI 403 Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429 +VL RR+ R+ I RVE+L G +IAYLN+D +I IIR ED+PK VM+ F LT+ Q + Sbjct: 404 DVLVRRARHRLDKIAARVELLDGYIIAYLNLDRVIEIIRTEDEPKEVMMVEFGLTDRQAE 463 Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489 AILN+RLRSLRKLEE +++ E D LL E+++++ L+ S +Q ++ ++ +++ + Sbjct: 464 AILNMRLRSLRKLEEMELRREHDELLKERDELEKLVESPARQRTRLKKDLAALRKRYGPE 523 Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA---LHFK 546 TDLGRRRT E + A + L +AMIE+EPITV++S RGWIR++ H DL+A L FK Sbjct: 524 TDLGRRRTLVEEAAPAREIPL-EAMIEREPITVILSERGWIRAMSGHR-DLAAADTLKFK 581 Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606 EGD + A HA+TTD++LL ++ G+ +TL + L GRG G+ ++ L+D+++ IV Sbjct: 582 EGDGPQFAFHAYTTDKLLLATSTGRVFTLSSDKLPGGRGFGDPVRSLVDMDNEGAIVALM 641 Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT--GDHVAVV 664 + LL+ SS G FI ++I+A TRKGK + V + ++ +V VT D +AV+ Sbjct: 642 PARAGGDLLLASSDGRGFIAAMADIMAETRKGKQVVNVRAGARLAVVHPVTADADSIAVI 701 Query: 665 GENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSEN 724 GENRKLL+F+I ++P M+RG+GV+LQ Y+DGG+SD I F++ +GLTW R+E Sbjct: 702 GENRKLLVFAISEMPRMARGQGVQLQRYRDGGLSDAIAFRLADGLTWAMGGDSGRTRNET 761 Query: 725 DLLGWLGKRGGVGSLVPKGFPRSGKF 750 D+ W RG G + P GFPR +F Sbjct: 762 DMTPWKVARGAAGRMPPNGFPRDNRF 787 >gi|99082272|ref|YP_614426.1| DNA topoisomerase IV subunit A [Ruegeria sp. TM1040] gi|99038552|gb|ABF65164.1| DNA topoisomerase IV subunit A [Ruegeria sp. TM1040] Length = 782 Score = 776 bits (2003), Expect = 0.0, Method: Compositional matrix adjust. Identities = 390/763 (51%), Positives = 519/763 (68%), Gaps = 38/763 (4%) Query: 22 LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81 LR A+ ERYL YALSTI RA+PD RDG KPVHRRI++AMS + L F KSA+I G+ Sbjct: 23 LRRAIGERYLTYALSTIMHRALPDARDGLKPVHRRILYAMSRLRLSSSGGFLKSAKISGD 82 Query: 82 VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE 141 +G HPHGD ++YD++ RLAQ F RYPL+ GQGNFGNIDGD+ AA RYTEARMT +AE Sbjct: 83 TMGDFHPHGDAAIYDAMARLAQDFAVRYPLVDGQGNFGNIDGDNPAASRYTEARMTFIAE 142 Query: 142 LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICE 201 +L+G+ EDAVDFRD Y+ EP V P+ FPN+LANG SGIAVGMAT+IP HN+ E+ + Sbjct: 143 AMLEGLGEDAVDFRDNYDGRLQEPSVLPATFPNILANGASGIAVGMATNIPPHNISELID 202 Query: 202 AALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEV 261 A + LI P + + LL+Y+ GPDFPTGG IVE +E+I ++YR GRG FR+RA+ +E++ Sbjct: 203 ACVHLIKAPNAADDTLLQYVPGPDFPTGGTIVEPKENIAQAYRTGRGSFRLRAKHEIEDL 262 Query: 262 GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLD 321 GRG W +VVTEIPYQVQKS+LIEKIAELI K++P+L D+RDESAED+RI+L PK++++D Sbjct: 263 GRGQWQVVVTEIPYQVQKSKLIEKIAELIQTKKVPILADVRDESAEDIRIILEPKSKNVD 322 Query: 322 PDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQ 381 P++LM + SD+E RF LNMNVL G P+V + +L+ +L HRR+VL RRS RM Sbjct: 323 PEVLMGLMHRNSDLEVRFSLNMNVLIDGVTPKVCSMKEVLRAFLDHRRDVLQRRSRHRMA 382 Query: 382 AIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR---------FS---------- 422 ID R+E+L G +IA+LN+D +I IIR ++ PK ++ F+ Sbjct: 383 KIDHRLEVLDGFIIAFLNLDRVIDIIRYDEDPKAALMRENWDREHPRAFTEAEYVTPAAG 442 Query: 423 ---LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479 L+E Q +AILN+RLRSLRKLEE ++ E D L E+ + LL S + QW +I ++ Sbjct: 443 DGELSEVQAEAILNMRLRSLRKLEEIELTRERDALREERAGLVELLGSEELQWKKITEQL 502 Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539 RE K+ F K+ + G RRT F E + L +AMI++EPITVV S GWIR++ H +D Sbjct: 503 RETKKQFGKNYEGGARRTQFAEAGEIEDVPL-EAMIDREPITVVCSQMGWIRAMTGH-ID 560 Query: 540 LS-ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNH 598 LS L FK+GD + HA TTDR+L+ ++G+ YTL A NL GRG GE ++L++DL + Sbjct: 561 LSRELKFKDGDGPRFIFHAETTDRLLVFGSNGRFYTLSAANLPGGRGMGEPVRLMVDLPN 620 Query: 599 NQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG 658 +IV F+++ +LLV S GN F+ E +I+A TR GK L V +E+ K+ + V G Sbjct: 621 EVEIVDLFIHNPEGRLLVASDAGNGFVCAEKDIVAQTRGGKQVLNVKDDERAKICIPVAG 680 Query: 659 DHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYK-----------DGGISDVICFKICE 707 DHVAVV EN K L+F+I+++PE++RGKGVRLQ Y DGG++DV F E Sbjct: 681 DHVAVVSENGKFLVFAIEEMPELTRGKGVRLQKYNMARGRQGALELDGGLADVTTFNWDE 740 Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750 GL W G+ R E DL WLGKR G+G P GFP+ KF Sbjct: 741 GLHWEMGGGKI--RHETDLTQWLGKRAGIGKRPPYGFPKDYKF 781 >gi|114764505|ref|ZP_01443730.1| DNA topoisomerase IV subunit A [Pelagibaca bermudensis HTCC2601] gi|114543072|gb|EAU46091.1| DNA topoisomerase IV subunit A [Roseovarius sp. HTCC2601] Length = 807 Score = 776 bits (2003), Expect = 0.0, Method: Compositional matrix adjust. Identities = 395/795 (49%), Positives = 528/795 (66%), Gaps = 67/795 (8%) Query: 19 AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78 A LR A+ +RYL YALSTI RA+PD RDG KPVHRRI++AM + L F KSA+I Sbjct: 16 AEPLRRAIGDRYLTYALSTIMNRALPDARDGLKPVHRRILYAMRRLRLSSNGGFLKSAKI 75 Query: 79 VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138 G+ +G HPHGD ++YD++ RLAQ F RYPL+ GQGNFGNIDGD+ AA RYTEARMT Sbjct: 76 SGDTMGDFHPHGDAAIYDAMARLAQDFTIRYPLVDGQGNFGNIDGDNPAASRYTEARMTI 135 Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198 +AE +L G+DE++VDFR Y+ EP V P+ +PNLLANG+SGIAVGMAT+IP HN+ E Sbjct: 136 MAEALLDGLDENSVDFRPNYDGRLEEPSVLPASYPNLLANGSSGIAVGMATNIPPHNIGE 195 Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258 + +A L LI P + LL+Y+ GPDFPTGG+IVE R++I ++YR GRG R+RA+W V Sbjct: 196 LIDACLHLIKAPGAGDDTLLQYVPGPDFPTGGVIVEPRDNIAQAYRTGRGSIRLRAKWEV 255 Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318 E++GRG W VVTEIPYQVQKS+L+E++AELI K++P+L DIRDESAED+R+VL PK++ Sbjct: 256 EDLGRGQWQAVVTEIPYQVQKSKLVERLAELIQTKKVPILADIRDESAEDIRMVLEPKSK 315 Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378 ++DPDLLM +F SD+ETRF LNMNVL G P+V L +L+ +L RR+VL RR+ Sbjct: 316 NVDPDLLMNMLFKNSDLETRFSLNMNVLIDGVTPKVCSLKEVLRAFLDFRRDVLCRRARH 375 Query: 379 RMQAIDRRVEILKGLLIAYLNIDEII----------AIIRNEDKPKPVMVS--------- 419 RM ID R+E+L+GL+IA+LN+D +I A + ED KP + Sbjct: 376 RMAKIDNRLEVLEGLIIAFLNLDRVIDIIRYDDDPKAALMYEDWSKPHQATIARATDERD 435 Query: 420 --------------------------------------RFS-----LTENQVDAILNLRL 436 RF L++ Q +AILN+RL Sbjct: 436 YRSPLAGIDVKALELRPDPEAEARGVLADEGTPTQIPQRFGGRSEGLSDVQAEAILNMRL 495 Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496 RSLR+LEE ++ +E D L+ E+ ++ LL S QW +++ ++REVK+ F+K D G R Sbjct: 496 RSLRRLEELELVNERDKLMEERAGLEDLLASEDLQWKRVSEQLREVKKAFAKDLDRGARL 555 Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS-ALHFKEGDSLKIAL 555 TTF E A+ L+ AMIE+EPITVV S GWIR++ H +DL+ L FK+GD + Sbjct: 556 TTFAEAGEAEDVPLE-AMIEREPITVVCSQMGWIRAMTGH-IDLNRELKFKDGDGPRFIF 613 Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615 HA TTD++L++ ++G+ YTL A NL GRG GE ++L++DL + +I V+ KLL Sbjct: 614 HAETTDKLLVVGSNGRFYTLSAANLPGGRGMGEPVRLMVDLPNEAEIHDLLVHTPGRKLL 673 Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSI 675 V SS G+ FIV E++++A TR GK L V K ++ VTGD VAVVGENRK+L+F + Sbjct: 674 VASSAGDGFIVPENDVLAQTRSGKQVLNVKDGVKTQVCKPVTGDAVAVVGENRKVLVFML 733 Query: 676 DQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGG 735 D++PEM RGKGVRLQ YKDGG+SD F + +GL+W D AGR+ R+E L W+GKR G Sbjct: 734 DELPEMGRGKGVRLQKYKDGGLSDATTFTLADGLSWKDPAGRT--RTEAALDEWIGKRAG 791 Query: 736 VGSLVPKGFPRSGKF 750 G + P+GFPR F Sbjct: 792 SGRMAPRGFPRDNTF 806 >gi|260429086|ref|ZP_05783063.1| DNA topoisomerase IV, A subunit [Citreicella sp. SE45] gi|260419709|gb|EEX12962.1| DNA topoisomerase IV, A subunit [Citreicella sp. SE45] Length = 807 Score = 776 bits (2003), Expect = 0.0, Method: Compositional matrix adjust. Identities = 395/811 (48%), Positives = 534/811 (65%), Gaps = 68/811 (8%) Query: 3 VDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62 +++I + + NV A LR A+ ERYL YALSTI RA+PD RDG KPVHRRI++AM Sbjct: 1 MNDIVDDPNMNPRNV-AEPLRRAIGERYLTYALSTIMNRALPDARDGLKPVHRRILYAMR 59 Query: 63 EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122 + L F KSA+I G+ +G HPHGD ++YD++ RLAQ F RYPL+ GQGNFGNID Sbjct: 60 RLRLSSSGGFLKSAKISGDTMGDFHPHGDAAIYDAMARLAQDFTIRYPLVDGQGNFGNID 119 Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182 GD+ AA RYTEARMT +AE +L+G+DED+VDFR Y+ EP V P+ +PNLLANG SG Sbjct: 120 GDNPAASRYTEARMTIMAEALLEGLDEDSVDFRPNYDGRLEEPTVLPASYPNLLANGASG 179 Query: 183 IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242 IAVGMAT+IP HN+ E+ +A L LI P+ E LL Y+ GPDFPTGG+IVE RE+I E+ Sbjct: 180 IAVGMATNIPPHNIGELIDACLHLIKTPDARDETLLNYVPGPDFPTGGVIVEPRENIAEA 239 Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302 YR GRG R+RA+W VE++GRG W VVTEIPYQVQKS+L+E++AELI K++P+L DIR Sbjct: 240 YRTGRGSIRLRAKWEVEDLGRGMWQAVVTEIPYQVQKSKLVERLAELIQTKKVPILADIR 299 Query: 303 DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362 DESAEDVR+VL PK +++DPD+LM +F SD+E RF LNMNVL G P+V L +L+ Sbjct: 300 DESAEDVRMVLEPKTKNVDPDVLMNMLFRNSDLEIRFSLNMNVLIDGLTPKVCSLKEVLR 359 Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM----- 417 +L RR+VL RRS RM ID R+E+L+GL+IA+LN+D +I IIR +D PK + Sbjct: 360 AFLDFRRDVLCRRSRHRMAKIDNRLEVLEGLIIAFLNLDRVIDIIRYDDDPKAALMYEDW 419 Query: 418 -------VSRFSLTENQVDAILNLRLRSL------------------------------- 439 +SR + + V +L + +++L Sbjct: 420 SKPHQATISRATDDSDYVSPLLGVDVKALELRPDPEAVARGVLADEGGPGTIPQRFGGRS 479 Query: 440 -------------------RKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480 R+LEE ++ +E D L+ E+ ++ LL S + QW +I+ ++R Sbjct: 480 EGLSDVQAEAILNMRLRSLRRLEELELVNERDKLMEERAGLEDLLASDELQWKRISEQLR 539 Query: 481 EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL 540 EVK+ F+K D G R T+F E A++ L +AMIE+EPITVV S GWIR++ H +DL Sbjct: 540 EVKKSFAKDLDRGARLTSFAEAGEAEEVPL-EAMIEREPITVVCSQMGWIRAMTGH-IDL 597 Query: 541 S-ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHN 599 + L FK+GD + HA TTD++L+ T+G+ YTL A +L GRG GE ++L++DL + Sbjct: 598 NRELKFKDGDGPRFVFHAETTDKLLVFGTNGRFYTLAAASLPGGRGMGEPLRLMVDLPNE 657 Query: 600 QDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD 659 +I+ F++ +LLV SS G+ F+V E+E++A TR GK L V K K+ V+GD Sbjct: 658 AEILDIFIHQPDRRLLVASSAGDGFVVPEAEVLAQTRAGKQVLNVKDGVKAKVCKPVSGD 717 Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719 VAVVGENRK+L+F D++PEM RGKGVRLQ YKDGG+SDV F + +GL+W D AGR+ Sbjct: 718 AVAVVGENRKVLVFMADELPEMGRGKGVRLQKYKDGGMSDVTTFTLTDGLSWRDPAGRT- 776 Query: 720 NRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750 R+E +L W+GKR G + P+GFPR F Sbjct: 777 -RTETNLEEWIGKRATSGRMAPRGFPRDNTF 806 >gi|163739412|ref|ZP_02146822.1| DNA topoisomerase IV, A subunit [Phaeobacter gallaeciensis BS107] gi|163740201|ref|ZP_02147595.1| DNA topoisomerase IV subunit A [Phaeobacter gallaeciensis 2.10] gi|161386059|gb|EDQ10434.1| DNA topoisomerase IV subunit A [Phaeobacter gallaeciensis 2.10] gi|161387165|gb|EDQ11524.1| DNA topoisomerase IV, A subunit [Phaeobacter gallaeciensis BS107] Length = 782 Score = 775 bits (2002), Expect = 0.0, Method: Compositional matrix adjust. Identities = 389/763 (50%), Positives = 523/763 (68%), Gaps = 38/763 (4%) Query: 22 LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81 LR A+ ERYL YALSTI RA+PD RDG KPVHRRI++AMS + L F KSA+I G+ Sbjct: 23 LRRAIGERYLTYALSTIMHRALPDARDGLKPVHRRILYAMSRLRLTSTGGFLKSAKISGD 82 Query: 82 VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE 141 +G HPHGD ++YD++ RLAQ F RYPL+ GQGNFGNIDGD+ AA RYTEARMT VAE Sbjct: 83 TMGDFHPHGDAAIYDAMARLAQDFNVRYPLVDGQGNFGNIDGDNPAASRYTEARMTFVAE 142 Query: 142 LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICE 201 +L+G+ E+AVDFRD Y+ +EP V P+ FPN+LANG +GIAVGMAT+IP HN+ E+ + Sbjct: 143 AMLEGLSENAVDFRDNYDGRLTEPAVLPATFPNILANGAAGIAVGMATNIPPHNIGELID 202 Query: 202 AALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEV 261 A L LI P+ + LL Y+ GPDFPTGGIIVE +E+I ++Y GRG FR+R VE++ Sbjct: 203 ACLHLIKTPDARDDTLLNYVPGPDFPTGGIIVEPKENIAKAYNTGRGSFRLRCTHEVEDL 262 Query: 262 GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLD 321 GRG W IV+TEIPYQVQKS+LIEKIAELI K+IP+L D+RDESAED+RIVL PK++++D Sbjct: 263 GRGQWQIVITEIPYQVQKSKLIEKIAELIQTKKIPILADVRDESAEDIRIVLEPKSKNVD 322 Query: 322 PDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQ 381 P++LM +F SD+E RF LNMNVL G P+V + +L+ +L HRR+VL RRS RM Sbjct: 323 PEVLMNMMFRNSDLEIRFSLNMNVLIDGVTPKVCSMKEVLRAFLDHRRDVLQRRSQHRMD 382 Query: 382 AIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM----------------------VS 419 ID R+E+L+G +IA+LN+D +I IIR +D PK + + Sbjct: 383 KIDHRLEVLEGFIIAFLNLDRVIDIIRYDDDPKAALMRENWSLDHPRAYTEADYVSPAIG 442 Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479 LTE Q +AILN+RLRSLR+LEE ++ E D L E+ + LL S QW++IA ++ Sbjct: 443 AGELTEVQAEAILNMRLRSLRRLEEIELVRERDALREERAGLVELLASEDLQWSRIAEQL 502 Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539 ++ K+ F K+ + G RRT F E ++ L +AMI++EPITVV S GWIR++ H +D Sbjct: 503 KDTKKQFGKTYEGGPRRTRFAEAGEVEEVPL-EAMIDREPITVVCSQMGWIRAMTGH-ID 560 Query: 540 LS-ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNH 598 L L FK+GD + HA TTDR+L+ +++G+ YT+ A NL GRG GE ++L++DL + Sbjct: 561 LGRELKFKDGDGPRFIFHAETTDRLLVFASNGRFYTISASNLPGGRGMGEPLRLMVDLPN 620 Query: 599 NQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG 658 +IV +++ +LLV S GN FI E +I+A TR GK L V +++ K+ ++VTG Sbjct: 621 EVEIVDILIHNPEGRLLVASDAGNGFICAEKDIVAQTRSGKQVLNVKDDDRAKICIRVTG 680 Query: 659 DHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYK-----------DGGISDVICFKICE 707 DHVAVV EN K L+F+++++PE++RGKGVRLQ Y DGG+SDV F + Sbjct: 681 DHVAVVSENGKFLVFAVEEMPELTRGKGVRLQKYNMARGKQGSLELDGGLSDVTTFNWDD 740 Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750 G++W G++ R E DL WLGKR G+G P GFPR+ KF Sbjct: 741 GISWEMGGGKT--RHETDLGQWLGKRAGIGKRPPYGFPRNYKF 781 >gi|86135755|ref|ZP_01054334.1| DNA topoisomerase IV, A subunit [Roseobacter sp. MED193] gi|85826629|gb|EAQ46825.1| DNA topoisomerase IV, A subunit [Roseobacter sp. MED193] Length = 781 Score = 775 bits (2002), Expect = 0.0, Method: Compositional matrix adjust. Identities = 387/763 (50%), Positives = 522/763 (68%), Gaps = 38/763 (4%) Query: 22 LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81 LR A+ ERYL YALSTI RA+PD RDG KPVHRRI++AM+ + L F KSA+I G+ Sbjct: 22 LRRAIGERYLTYALSTIMHRALPDARDGLKPVHRRILYAMNRLRLSSTGGFLKSAKISGD 81 Query: 82 VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE 141 +G HPHGD ++YD++ RLAQ F RYPL+ GQGNFGNIDGD+ AA RYTEARMT +AE Sbjct: 82 TMGDFHPHGDAAIYDAMARLAQDFNVRYPLVDGQGNFGNIDGDNPAASRYTEARMTFIAE 141 Query: 142 LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICE 201 +L+G++ED+VDFRD Y+ +EP V P+ FPN+LANG +GIAVGMAT+IP HN+ E+ + Sbjct: 142 AMLEGLNEDSVDFRDNYDGRLTEPAVLPATFPNILANGAAGIAVGMATNIPPHNIAELID 201 Query: 202 AALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEV 261 A + LI +P + LL+Y+ GPDFPTGGIIVE R++I ++YR GRG FR+R VE++ Sbjct: 202 ACIHLIKSPGADDDTLLKYVPGPDFPTGGIIVEPRDNIAKAYRTGRGSFRLRCTHEVEDL 261 Query: 262 GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLD 321 GRG W IVVTEIPYQVQKS+LIEKIAELI K++P+L DIRDESAED+RIVL PK++++D Sbjct: 262 GRGQWQIVVTEIPYQVQKSKLIEKIAELIQTKKVPILADIRDESAEDIRIVLEPKSKNVD 321 Query: 322 PDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQ 381 PD+LM +F SD+E RF LNMNVL G P+V + +L+ +L HRR+VL RRS +RM Sbjct: 322 PDVLMNMMFRNSDLELRFSLNMNVLIDGVTPKVCSMKEVLRAFLDHRRDVLRRRSEYRMG 381 Query: 382 AIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV----------------------S 419 ID R+E+L G +IA+LN+D +I IIR ++ PK ++ Sbjct: 382 KIDHRLEVLDGFIIAFLNLDRVIDIIRYDEDPKSALMRENWGLDHPRAYEESDYVTPAPG 441 Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479 L+E Q +AILN+RLRSLR+LEE ++ E D L E+ + LL S QW++I ++ Sbjct: 442 EGELSEVQAEAILNMRLRSLRRLEEVELTKERDALREERAGLVELLGSDDLQWSKITEQL 501 Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539 R K+ F K G RR+ F E ++ L +AMI++EPITVV S GWIR++ H +D Sbjct: 502 RATKKQFGKDYVGGARRSRFAEAGEVEEVPL-EAMIDREPITVVCSQMGWIRAMTGH-ID 559 Query: 540 LS-ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNH 598 L+ L FK+GD + HA TTDR+L+ ++G+ YT+ A NL GRG GE ++L++DL + Sbjct: 560 LNRELKFKDGDGARFIFHAETTDRLLVFGSNGRFYTVSAANLPGGRGMGEPLRLMVDLPN 619 Query: 599 NQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG 658 +IV +++ KLLV SS GN FI E +I+A TR GK L V +++ ++ + VTG Sbjct: 620 EVEIVDILIHNPEGKLLVASSAGNGFICAEKDIVAQTRTGKQVLNVKDDDRAQICIPVTG 679 Query: 659 DHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYK-----------DGGISDVICFKICE 707 DHVA+V EN K L+FS++++PE++RGKGVRLQ Y DGG+SD+ F E Sbjct: 680 DHVAIVSENGKFLVFSVEEMPELTRGKGVRLQKYNMARGKQGSLELDGGLSDITTFNWDE 739 Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750 G++W G++ R E DL WLGKR G+G P GFPR+ KF Sbjct: 740 GISWEMGGGKT--RHETDLSQWLGKRAGIGKRPPYGFPRNYKF 780 >gi|229586309|ref|YP_002844810.1| DNA topoisomerase IV subunit A [Rickettsia africae ESF-5] gi|228021359|gb|ACP53067.1| Topoisomerase IV subunit A [Rickettsia africae ESF-5] Length = 738 Score = 775 bits (2002), Expect = 0.0, Method: Compositional matrix adjust. Identities = 375/739 (50%), Positives = 531/739 (71%), Gaps = 4/739 (0%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 E V+ + AL ERYLAYALSTI R++PD+RDG KPVHRR+++AM ++ L+ + +K Sbjct: 3 EAKVENIDFGNALSERYLAYALSTIMSRSLPDVRDGLKPVHRRLLYAMLQLRLEPNSGYK 62 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 K AR+VG+VIGK HPHGD +VYD+LVRLAQ F RYPLI GQGNFG+IDGD+AAA RYTE Sbjct: 63 KCARVVGDVIGKYHPHGDVAVYDTLVRLAQHFSLRYPLIDGQGNFGSIDGDNAAAMRYTE 122 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 +RMT + L+++ +D+D VDFR TY+ D EPV+ P+ FPNLLANG+ GIAVGMAT+IP Sbjct: 123 SRMTDICTLLMEDIDKDTVDFRPTYDGADLEPVIMPASFPNLLANGSEGIAVGMATNIPP 182 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E+C+A + LI++P+ I ++ ++ GPDFPTGGII++ E I +Y GRG RVR Sbjct: 183 HNLHELCDALIHLINHPKAEINDIINFVKGPDFPTGGIIIDKAEVINAAYTTGRGSLRVR 242 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313 +RW EE+ G++ IVVTEIPYQVQKS+LIE+IA L+ K+IPL+ +IRDES + +R+V+ Sbjct: 243 SRWEKEELSYGTYQIVVTEIPYQVQKSKLIEQIAILLKDKKIPLVSNIRDESTDIIRLVI 302 Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373 P++R DP ++MES+F L+++E+R LNMNV+ VP+VM + IL+E+L HR+ ++ Sbjct: 303 EPRDRGCDPQIVMESLFKLTNLESRIQLNMNVIGSNNVPRVMNILEILQEFLYHRQNIVT 362 Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILN 433 RRS++ + I R+EILKGL IAYLN+DEII IIR ED PK +M+ RF LTE QV+AILN Sbjct: 363 RRSTYLLNKIKHRLEILKGLRIAYLNLDEIIKIIREEDAPKAIMMERFKLTEIQVEAILN 422 Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493 RLRSLRKLEE +I +E NL ++ ++ +LN+ K+ W + EI+ V+ F +T +G Sbjct: 423 TRLRSLRKLEEQEIINEHSNLQKQQAILEEILNNPKELWKIVKKEIKTVQTKFGLNTVIG 482 Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKI 553 RRT+F EV+ ++ A I KEPIT++ S GW+RSLK H+ DLS + +KEGD+ K Sbjct: 483 ARRTSFEEVTLTNQVVDITAFITKEPITIICSKMGWVRSLKGHNTDLSTIKYKEGDAEKF 542 Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613 L A+TTD+IL++S++G+ +TL A N+ G+G GE+I+LL+D+ +N DI VY Sbjct: 543 ILEAYTTDKILIVSSEGRFFTLLADNISKGKGTGESIKLLVDIGNN-DITNILVYKPDQL 601 Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIF 673 LL+ SS G F+V +E++A T+ GK + V + V GD +A +GE+RKLL+F Sbjct: 602 LLLASSVGKGFLVNSNEVMAQTKTGKQIMNVPDGHVCIACLPVNGDSIACIGESRKLLVF 661 Query: 674 SIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKR 733 +ID+IPEM +G+GV LQ +K+ + D+ F +GL W ++ G+ + E +++ +LGKR Sbjct: 662 NIDEIPEMKKGQGVTLQKFKNAKLLDIKIFNKEDGLGW-NNNGKV--KLEKNIVAFLGKR 718 Query: 734 GGVGSLVPKGFPRSGKFLS 752 G G L P GFP++ +F S Sbjct: 719 GSTGKLPPMGFPKNNRFSS 737 >gi|241761963|ref|ZP_04760048.1| DNA topoisomerase IV, A subunit [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|241373643|gb|EER63215.1| DNA topoisomerase IV, A subunit [Zymomonas mobilis subsp. mobilis ATCC 10988] Length = 748 Score = 775 bits (2002), Expect = 0.0, Method: Compositional matrix adjust. Identities = 387/741 (52%), Positives = 525/741 (70%), Gaps = 7/741 (0%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 EN+ + AL ERYLAYALSTI R++PD+RDG KPV RR++ AM + LD +A+KK Sbjct: 9 ENISETAFDKALSERYLAYALSTITSRSLPDIRDGLKPVQRRLLWAMRLLKLDPASAYKK 68 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 AR+VG+VIGK HPHGDQSVYD++VRLAQ F RYPL+ GQGNFGNIDGD+AAA RYTEA Sbjct: 69 CARVVGDVIGKYHPHGDQSVYDAMVRLAQDFALRYPLVDGQGNFGNIDGDNAAAMRYTEA 128 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 R+T A +++G++E AVDFR TYN E+ EP F FPNLLANG+SGIAVGMATSIP H Sbjct: 129 RLTTAAYDLMEGMEEGAVDFRPTYNSEEEEPEFFSGLFPNLLANGSSGIAVGMATSIPPH 188 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 NV E+ +A LID+PE ++LL ++ GPDFPTGG IV+S ++I +Y GRG FRVRA Sbjct: 189 NVAELIDAICHLIDHPEAETKELLRFVKGPDFPTGGQIVDSVDTIRHAYETGRGSFRVRA 248 Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314 R+ VE++GRG W IV+ EIP+Q+ KSRLIE+IA LI K++P+L DIRDES E++RIVL Sbjct: 249 RYEVEDIGRGGWIIVIHEIPWQIPKSRLIEEIAALINEKKLPILSDIRDESDENIRIVLE 308 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 PK+R++DP LLM+ +F L+ +ETR LNMNVL P V+PL +LKEWLAH+ +L R Sbjct: 309 PKSRTVDPQLLMDGLFHLTSLETRISLNMNVLDSHHTPAVLPLHTVLKEWLAHQFAMLQR 368 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNL 434 R R+Q ID RVE+L+G L AYLN+D +I IIRNED PK VM++ F L++ Q +AILN+ Sbjct: 369 RCRHRLQRIDDRVELLEGYLAAYLNLDRVIEIIRNEDDPKSVMIAEFKLSDRQAEAILNM 428 Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494 RLR+L++LEE +I +E D+L E+ + +L+ S Q ++ ++ +++ +S + LG Sbjct: 429 RLRALKRLEEAEITAERDSLKEERAGLQALIESDALQSKKLKSDLSALRKRYSLKSKLGA 488 Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS---ALHFKEGDSL 551 R+T E + A KA AMIE+EP+TVV+S RGWIR LK H VDL A+ FKEGD Sbjct: 489 RQTLIEEQTPA-KAIPLDAMIEREPMTVVLSKRGWIRGLKGH-VDLKSTEAMRFKEGDEA 546 Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611 HA+TTDR+L+ + DG+ YTL A L GRG GE ++L++D++++ I+ + Sbjct: 547 DFICHAYTTDRLLIATEDGRFYTLLADRLPGGRGFGEPVRLMLDISNDTKIMALLPLNPE 606 Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL--VVKVTGDHVAVVGENRK 669 KLLVVSS G FI + + ++A TRKGK ++V +E + + V++ DH+A++GENRK Sbjct: 607 GKLLVVSSSGRGFITQMTNLVAETRKGKQIVRVKKDEYLMVLKVIEEDHDHIALIGENRK 666 Query: 670 LLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGW 729 LL F + QIPE+++G GV+LQ Y+ G +SD F + EGL+W R+E D+ W Sbjct: 667 LLAFPLSQIPELAKGSGVQLQRYRGGHLSDATTFTLEEGLSWPMGGESGRIRTETDMKTW 726 Query: 730 LGKRGGVGSLVPKGFPRSGKF 750 + RG G L P GFP++ +F Sbjct: 727 VVARGASGRLPPVGFPKNNRF 747 >gi|67458499|ref|YP_246123.1| DNA topoisomerase IV subunit A [Rickettsia felis URRWXCal2] gi|75537034|sp|Q4UNA0|PARC_RICFE RecName: Full=DNA topoisomerase 4 subunit A; AltName: Full=Topoisomerase IV subunit A gi|67004032|gb|AAY60958.1| Topoisomerase IV subunit A [Rickettsia felis URRWXCal2] Length = 737 Score = 775 bits (2001), Expect = 0.0, Method: Compositional matrix adjust. Identities = 372/739 (50%), Positives = 536/739 (72%), Gaps = 4/739 (0%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 E ++ + AL ERYLAYALSTI R++PD+RDG KPVHRR+++AM ++ L+ + +K Sbjct: 3 EAKIENIDFGNALSERYLAYALSTIMSRSLPDVRDGLKPVHRRLLYAMLQLRLEPNSGYK 62 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 K AR+VG+VIGK HPHGD +VYD+LVRLAQ F RYPLI GQGNFG+IDGD+AAA RYTE Sbjct: 63 KCARVVGDVIGKYHPHGDVAVYDTLVRLAQHFSLRYPLIDGQGNFGSIDGDNAAAMRYTE 122 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 +RMT++ L++ +++D VDFR TY++ D EPV+ P+ FPNLLANG+ GIAVGMAT+IP Sbjct: 123 SRMTEICTLLMVDIEKDTVDFRPTYDDSDLEPVIMPASFPNLLANGSEGIAVGMATNIPP 182 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E+C+A + LID+P+ I ++ +I GPDFPTGGII++ E I +Y GRG FR+R Sbjct: 183 HNLHELCDALVHLIDHPKAEISDMMNFIKGPDFPTGGIIIDKAELINAAYSTGRGSFRMR 242 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313 +RW EE+ G++ IVVTEIPYQVQKS+LIE+IA L+ K+IPL+ +IRDES + +R+V+ Sbjct: 243 SRWEKEELSYGTYQIVVTEIPYQVQKSKLIEQIAILLKDKKIPLVSNIRDESTDIIRLVI 302 Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373 P++R DP ++MES+F L+++E+R LNMNV+ VP+VM + +L+E+LAHR+ ++ Sbjct: 303 EPRDRGCDPQIVMESLFKLTNLESRIQLNMNVIGSNNVPRVMNILEVLQEFLAHRQNIVT 362 Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILN 433 RRS++ + I R+EIL+GL IAYLN+DEII IIR ED+PK +M+ RF LTE QV+AILN Sbjct: 363 RRSTYLLNKIKHRLEILEGLRIAYLNLDEIIKIIREEDEPKAIMMERFKLTEIQVEAILN 422 Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493 RLRSLRKLEE +I +E NL ++ ++ +LN+ K+ W + EI+ V+ F +T +G Sbjct: 423 TRLRSLRKLEEQEIINEHSNLQKQQAILEEILNNPKELWKIVKKEIKAVQTKFGLNTVIG 482 Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKI 553 RRT+F EV+ ++ A I KEPIT++ S GW+RSLK H+ DLS + +KEGD+ K Sbjct: 483 ARRTSFEEVTLTNQVVDITAFITKEPITIICSKMGWVRSLKGHNTDLSTIKYKEGDAEKF 542 Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613 + A+TTD+IL++S++G+ +TL A N+ G+G GE+I+LL+D+ +N DI V+ S Sbjct: 543 IIEAYTTDKILIVSSEGRFFTLLADNISKGKGTGESIKLLVDIGNN-DITNILVHKSDQL 601 Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIF 673 LL+ SS G F+V +E++A T+ GK + V + V GD +A +GE+RKLL+F Sbjct: 602 LLLASSIGKGFLVNSNEVMAQTKTGKQIMNVPDGHTCIACLPVNGDSIACIGESRKLLVF 661 Query: 674 SIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKR 733 +ID+IPEM +G+GV LQ +K+ + D+ F +GL+W ++ G+ + E +++ +LGKR Sbjct: 662 NIDEIPEMKKGQGVTLQKFKNAKLLDIKIFNKEDGLSW-NNNGKV--KLEKNIIAFLGKR 718 Query: 734 GGVGSLVPKGFPRSGKFLS 752 G G L P GF ++ +F S Sbjct: 719 GSTGKLPPMGFHKNNRFSS 737 >gi|260752502|ref|YP_003225395.1| DNA topoisomerase IV subunit A [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|258551865|gb|ACV74811.1| DNA topoisomerase IV, A subunit [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 748 Score = 775 bits (2001), Expect = 0.0, Method: Compositional matrix adjust. Identities = 387/741 (52%), Positives = 525/741 (70%), Gaps = 7/741 (0%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 EN+ + AL ERYLAYALSTI R++PD+RDG KPV RR++ AM + LD +A+KK Sbjct: 9 ENISETAFDKALSERYLAYALSTITSRSLPDIRDGLKPVQRRLLWAMRLLKLDPASAYKK 68 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 AR+VG+VIGK HPHGDQSVYD++VRLAQ F RYPL+ GQGNFGNIDGD+AAA RYTEA Sbjct: 69 CARVVGDVIGKYHPHGDQSVYDAMVRLAQDFALRYPLVDGQGNFGNIDGDNAAAMRYTEA 128 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 R+T A +++G++E AVDFR TYN E+ EP F FPNLLANG+SGIAVGMATSIP H Sbjct: 129 RLTTAAYDLMEGMEEGAVDFRPTYNSEEEEPEFFSGLFPNLLANGSSGIAVGMATSIPPH 188 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 NV E+ +A LID+PE ++LL ++ GPDFPTGG IV+S ++I +Y GRG FRVRA Sbjct: 189 NVAELIDAICHLIDHPEAETKELLRFVKGPDFPTGGQIVDSVDTIRHAYETGRGSFRVRA 248 Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314 R+ VE++GRG W IV+ EIP+Q+ KSRLIE+IA LI K++P+L DIRDES E++RIVL Sbjct: 249 RYEVEDIGRGGWIIVIHEIPWQIPKSRLIEEIAALINEKKLPILSDIRDESDENIRIVLE 308 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 PK+R++DP LLM+ +F L+ +ETR LNMNVL P V+PL +LKEWLAH+ +L R Sbjct: 309 PKSRTVDPQLLMDGLFHLTSLETRISLNMNVLDSHHTPAVLPLHTVLKEWLAHQFAMLQR 368 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNL 434 R R+Q ID RVE+L+G L AYLN+D +I IIRNED PK VM++ F L++ Q +AILN+ Sbjct: 369 RCRHRLQRIDDRVELLEGYLAAYLNLDRVIEIIRNEDDPKSVMIAEFKLSDRQAEAILNM 428 Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494 RLR+L++LEE +I +E D+L E+ + +L+ S Q ++ ++ +++ +S + LG Sbjct: 429 RLRALKRLEEAEITAERDSLKEERAGLQALIESDALQSKKLKSDLSALRKRYSLKSQLGA 488 Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS---ALHFKEGDSL 551 R+T E + A KA AMIE+EP+TVV+S RGWIR LK H VDL A+ FKEGD Sbjct: 489 RQTLIEEQTPA-KAIPLDAMIEREPMTVVLSKRGWIRGLKGH-VDLKSTEAMRFKEGDEA 546 Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611 HA+TTDR+L+ + DG+ YTL A L GRG GE ++L++D++++ I+ + Sbjct: 547 DFICHAYTTDRLLIATEDGRFYTLLADRLPGGRGFGEPVRLMLDISNDTKIMALLPLNPE 606 Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL--VVKVTGDHVAVVGENRK 669 KLLVVSS G FI + + ++A TRKGK ++V +E + + V++ DH+A++GENRK Sbjct: 607 GKLLVVSSSGRGFITQMTNLVAETRKGKQIVRVKKDEYLMVLKVIEEGHDHIALIGENRK 666 Query: 670 LLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGW 729 LL F + QIPE+++G GV+LQ Y+ G +SD F + EGL+W R+E D+ W Sbjct: 667 LLAFPLSQIPELAKGSGVQLQRYRGGHLSDATTFTLEEGLSWPMGGESGRIRTETDMKTW 726 Query: 730 LGKRGGVGSLVPKGFPRSGKF 750 + RG G L P GFP++ +F Sbjct: 727 VVARGASGRLPPVGFPKNNRF 747 >gi|209545463|ref|YP_002277692.1| DNA topoisomerase IV subunit A [Gluconacetobacter diazotrophicus PAl 5] gi|209533140|gb|ACI53077.1| DNA topoisomerase IV, A subunit [Gluconacetobacter diazotrophicus PAl 5] Length = 743 Score = 775 bits (2000), Expect = 0.0, Method: Compositional matrix adjust. Identities = 372/734 (50%), Positives = 520/734 (70%), Gaps = 5/734 (0%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 +++ L AL ERYLAYA+STI R++PD+RDG KPVHRR+I+AM ++ LD + FKK Sbjct: 8 HIEETRLADALSERYLAYAMSTIMSRSLPDVRDGLKPVHRRMIYAMRQLRLDPTSGFKKC 67 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 AR+VG+VIGK HPHGD SVY++LVRLAQ F RYPL+ GQGNFG+IDGD+AAA RYTEAR Sbjct: 68 ARVVGDVIGKYHPHGDASVYEALVRLAQDFAVRYPLVEGQGNFGSIDGDNAAAMRYTEAR 127 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 MT+VA +L+G+D+D+VDFR TY+ E+ EPVV P+ FPNLLANG +GIAVGMATSIP HN Sbjct: 128 MTEVARALLEGIDDDSVDFRPTYDGEEQEPVVLPAAFPNLLANGAAGIAVGMATSIPPHN 187 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 V EIC AA+ LI +P+ ++ L+E + GPDFPTGG+IVE R +++++Y GRG R+RAR Sbjct: 188 VGEICSAAIRLIRSPDATVADLMEDMPGPDFPTGGLIVEDRATLLQAYETGRGSMRIRAR 247 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315 W VE+ G+W +VVTEIPYQVQKSRLIE+IA+L+ K++PLL DIRDES D+R+VL P Sbjct: 248 WSVEQGRFGTWQVVVTEIPYQVQKSRLIEQIADLMEQKKLPLLGDIRDESTTDIRLVLEP 307 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 K+R ++P++LME++F + +E+RF LNMNVL RVP V L +L WL HR +VL RR Sbjct: 308 KSRGVEPEVLMETLFRATALESRFALNMNVLGADRVPGVRSLREVLLAWLDHRHDVLQRR 367 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435 S R+QA+DRR+EIL G L YLN+DE+I IIR ED K +++ FSLTE Q ++ILN+R Sbjct: 368 SRHRLQAVDRRLEILDGFLAVYLNLDEVIRIIREEDDAKAGLMATFSLTELQAESILNMR 427 Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495 LRSLR+LEE +I+ E L AE+ + +LL+S +W +I E++ +++ F LG R Sbjct: 428 LRSLRRLEELEIRKEHAALTAERGDLTALLDSEPLRWKKITEEVKAIRKAFGAGA-LGTR 486 Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555 R+ RA + + +A +E+EP+T+++S +GW+++LK H +D + FKEGD ++A+ Sbjct: 487 RSELAAPPRAIELSAIEA-VEREPLTLILSAKGWVKTLKGHGIDPTTQKFKEGDGFRLAV 545 Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615 +TDR+ + +TDG+A+TL A +L GRG G+ I+LLI+L++++D+V F + L Sbjct: 546 ECQSTDRLCVFATDGRAFTLRAADLPRGRGDGQPIRLLIELSNDEDLVAVFPVREGTRHL 605 Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSI 675 + SS G ++ + +++A R GK L + E ++ + V GDHV V+G+NR++L+F + Sbjct: 606 LASSAGRGLVIRDEDLVAEKRTGKQVLNLKDAESARICLPVEGDHVVVLGQNRRMLVFPV 665 Query: 676 DQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGG 735 Q+PEM+RG GV LQ YK+GG+ D +G W D A R D +LGKR Sbjct: 666 AQLPEMARGLGVALQKYKEGGLMDACLLSSTDGAAWPDPA---RIRPFADFRDYLGKRAD 722 Query: 736 VGSLVPKGFPRSGK 749 VG P R K Sbjct: 723 VGRPAPAWATRKPK 736 >gi|56551950|ref|YP_162789.1| DNA topoisomerase IV subunit A [Zymomonas mobilis subsp. mobilis ZM4] gi|56543524|gb|AAV89678.1| DNA topoisomerase IV, A subunit [Zymomonas mobilis subsp. mobilis ZM4] Length = 748 Score = 775 bits (2000), Expect = 0.0, Method: Compositional matrix adjust. Identities = 387/741 (52%), Positives = 524/741 (70%), Gaps = 7/741 (0%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 EN+ + AL ERYLAYALSTI R++PD+RDG KPV RR++ AM + LD +A+KK Sbjct: 9 ENISETAFDKALSERYLAYALSTITSRSLPDIRDGLKPVQRRLLWAMRLLKLDPASAYKK 68 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 AR+VG+VIGK HPHGDQSVYD++VRLAQ F RYPL+ GQGNFGNIDGD+AAA RYTEA Sbjct: 69 CARVVGDVIGKYHPHGDQSVYDAMVRLAQDFALRYPLVDGQGNFGNIDGDNAAAMRYTEA 128 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 R+T A +++G++E AVDFR TYN E+ EP F FPNLLANG+SGIAVGMATSIP H Sbjct: 129 RLTTAAYDLMEGMEEGAVDFRPTYNSEEEEPEFFSGLFPNLLANGSSGIAVGMATSIPPH 188 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 NV E+ +A LID+PE ++LL ++ GPDFPTGG IV+S +I +Y GRG FRVRA Sbjct: 189 NVAELIDAICHLIDHPEAETKELLRFVKGPDFPTGGQIVDSVNTIRHAYETGRGSFRVRA 248 Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314 R+ VE++GRG W IV+ EIP+Q+ KSRLIE+IA LI K++P+L DIRDES E++RIVL Sbjct: 249 RYEVEDIGRGGWIIVINEIPWQIPKSRLIEEIAALINEKKLPILSDIRDESDENIRIVLE 308 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 PK+R++DP LLM+ +F L+ +ETR LNMNVL P V+PL +LKEWLAH+ +L R Sbjct: 309 PKSRTVDPQLLMDGLFHLTSLETRISLNMNVLDSHHTPAVLPLHTVLKEWLAHQFAMLQR 368 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNL 434 R R+Q ID RVE+L+G L AYLN+D +I IIRNED PK VM++ F L++ Q +AILN+ Sbjct: 369 RCRHRLQRIDDRVELLEGYLAAYLNLDRVIEIIRNEDDPKSVMIAEFKLSDRQAEAILNM 428 Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494 RLR+L++LEE +I +E D+L E+ + +L+ S Q ++ ++ +++ +S + LG Sbjct: 429 RLRALKRLEEAEITAERDSLKEERAGLQALIESDALQSKKLKSDLSALRKRYSLKSKLGA 488 Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS---ALHFKEGDSL 551 R+T E + A KA AMIE+EP+TVV+S RGWIR LK H VDL A+ FKEGD Sbjct: 489 RQTLIEEQTPA-KAIPLDAMIEREPMTVVLSKRGWIRGLKGH-VDLKSTEAMRFKEGDEA 546 Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611 HA+TTDR+L+ + DG+ YTL A L GRG GE ++L++D++++ I+ + Sbjct: 547 DFICHAYTTDRLLIATEDGRFYTLLADRLPGGRGFGEPVRLMLDISNDTKIMALLPLNPE 606 Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL--VVKVTGDHVAVVGENRK 669 KLLVVSS G FI + + ++A TRKGK ++V +E + + V++ DH+A++GENRK Sbjct: 607 GKLLVVSSSGRGFITQMTNLVAETRKGKQIVRVKKDEYLMVLKVIEEDHDHIALIGENRK 666 Query: 670 LLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGW 729 LL F + QIPE+++G GV+LQ Y+ G +SD F + EGL+W R+E D+ W Sbjct: 667 LLAFPLSQIPELAKGSGVQLQRYRGGHLSDATTFTLEEGLSWPMGGESGRIRTETDMKTW 726 Query: 730 LGKRGGVGSLVPKGFPRSGKF 750 + RG G L P GFP++ +F Sbjct: 727 VVARGASGRLPPVGFPKNNRF 747 >gi|162148787|ref|YP_001603248.1| DNA topoisomerase IV subunit A [Gluconacetobacter diazotrophicus PAl 5] gi|161787364|emb|CAP56959.1| putative DNA topoisomerase 4 subunit A [Gluconacetobacter diazotrophicus PAl 5] Length = 743 Score = 774 bits (1999), Expect = 0.0, Method: Compositional matrix adjust. Identities = 372/734 (50%), Positives = 520/734 (70%), Gaps = 5/734 (0%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 +++ L AL ERYLAYA+STI R++PD+RDG KPVHRR+I+AM ++ LD + FKK Sbjct: 8 HIEETRLADALSERYLAYAMSTIMSRSLPDVRDGLKPVHRRMIYAMRQLRLDPTSGFKKC 67 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 AR+VG+VIGK HPHGD SVY++LVRLAQ F RYPL+ GQGNFG+IDGD+AAA RYTEAR Sbjct: 68 ARVVGDVIGKYHPHGDASVYEALVRLAQDFAVRYPLVEGQGNFGSIDGDNAAAMRYTEAR 127 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 MT+VA +L+G+D+D+VDFR TY+ E+ EPVV + FPNLLANG +GIAVGMATSIP HN Sbjct: 128 MTEVARALLEGIDDDSVDFRPTYDGEEQEPVVLSAAFPNLLANGAAGIAVGMATSIPPHN 187 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 V EIC AA+ LI +P+ ++ L+E + GPDFPTGG+IVE R +++++Y GRG R+RAR Sbjct: 188 VGEICSAAIRLIRSPDATVADLMEDMPGPDFPTGGLIVEDRTTLLQAYETGRGSMRIRAR 247 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315 W VE+ G+W +VVTEIPYQVQKSRLIE+IA+L+ K++PLL DIRDES D+R+VL P Sbjct: 248 WSVEQGRFGTWQVVVTEIPYQVQKSRLIEQIADLMEQKKLPLLGDIRDESTTDIRLVLEP 307 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 K+R ++P++LME++F + +E+RF LNMNVL RVP V L +L+ WL HR +VL RR Sbjct: 308 KSRGVEPEVLMETLFRATALESRFALNMNVLGADRVPGVRSLREVLRAWLDHRHDVLQRR 367 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435 S R+QA+DRR+EIL G L YLN+DE+I IIR ED K +++ FSLTE Q ++ILN+R Sbjct: 368 SRHRLQAVDRRLEILDGFLAVYLNLDEVIRIIREEDDAKAGLMATFSLTELQAESILNMR 427 Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495 LRSLR+LEE +I+ E L AE+ + +LL S +W +I E++ +++ F LG R Sbjct: 428 LRSLRRLEELEIRKEHAALTAERGDLTALLGSEPLRWKKITEEVKAIRKAFGAGA-LGTR 486 Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555 R+ RA + + +A +E+EP+T+++S +GW+++LK H +D +A FKEGD ++A+ Sbjct: 487 RSELAAPPRAIELSAIEA-VEREPLTLILSAKGWVKTLKGHGIDPTAQKFKEGDGFRLAV 545 Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615 +TDR+ + +TDG+A+TL A +L GRG G+ I+LLI+L++++D+V F + L Sbjct: 546 ECQSTDRLCVFATDGRAFTLRAADLPRGRGDGQPIRLLIELSNDEDLVAVFPVREGTRHL 605 Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSI 675 + SS G ++ + +++A R GK L + E ++ + V GDHV V+G+NR++L+F + Sbjct: 606 LASSAGRGLVIRDEDLVAEKRTGKQVLNLKDAESARICLPVEGDHVVVLGQNRRMLVFPV 665 Query: 676 DQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGG 735 Q+PEM+RG GV LQ YK+GG+ D +G W D A R D +LGKR Sbjct: 666 AQLPEMARGLGVALQKYKEGGLMDACLLSSTDGAAWPDPA---RIRPFADFRDYLGKRAD 722 Query: 736 VGSLVPKGFPRSGK 749 VG P R K Sbjct: 723 VGRPAPAWATRKPK 736 >gi|239946992|ref|ZP_04698745.1| DNA topoisomerase IV, A subunit [Rickettsia endosymbiont of Ixodes scapularis] gi|239921268|gb|EER21292.1| DNA topoisomerase IV, A subunit [Rickettsia endosymbiont of Ixodes scapularis] Length = 738 Score = 774 bits (1999), Expect = 0.0, Method: Compositional matrix adjust. Identities = 374/740 (50%), Positives = 535/740 (72%), Gaps = 5/740 (0%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 E ++ + AL ERYLAYALSTI R++PD+RDG KPVHRR+++AM ++ L+ + +K Sbjct: 3 EAKIENIDFGNALSERYLAYALSTIMSRSLPDVRDGLKPVHRRLLYAMLQLRLEPNSGYK 62 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 K AR+VG+VIGK HPHGD +VYD+LVRLAQ F RYPLI GQGNFG+IDGD+AAA RYTE Sbjct: 63 KCARVVGDVIGKYHPHGDVAVYDTLVRLAQHFSLRYPLIDGQGNFGSIDGDNAAAMRYTE 122 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 +RMT++ L++ +D+D VDFR TY++ D EPV+ P+ FPNLLANG+ GIAVGMAT+IP Sbjct: 123 SRMTEICTLLMIDIDKDTVDFRPTYDDSDLEPVIMPASFPNLLANGSEGIAVGMATNIPP 182 Query: 194 HNVQEICEAALALIDN-PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252 HN+ E+C+A + LID+ P+ I ++ +I GPDFPTGGII++ E I +Y GRG RV Sbjct: 183 HNLHELCDALVHLIDHHPKAEINDIMNFIKGPDFPTGGIIIDKAEVINAAYTTGRGSLRV 242 Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312 R+RW EE+ G++ IVVTEIPYQVQKS+LIE+IA L+ K+IPL+ +IRDES + +R++ Sbjct: 243 RSRWEKEELSYGTYQIVVTEIPYQVQKSKLIEQIAILLKDKKIPLVSNIRDESTDIIRLI 302 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 + P++RS DP ++MES+F L+++E+R LNMNV+ VP+VM + +L+E+LAHR+ ++ Sbjct: 303 IEPRDRSCDPQIVMESLFKLTNLESRIQLNMNVIGSNNVPRVMNILEVLQEFLAHRQNIV 362 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAIL 432 RRS++ + I R+EIL+GL IAYLN+DEII IIR ED+PK +M+ RF LTE QV+AIL Sbjct: 363 TRRSTYLLNKIKHRLEILEGLRIAYLNLDEIIKIIREEDEPKAIMMERFKLTEIQVEAIL 422 Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492 N RLRSLRKLEE +I +E NL ++ ++ +LN+ K+ W + EI+ V+ F +T + Sbjct: 423 NTRLRSLRKLEEQEIINEHGNLQKQQAILEEILNNPKELWKVVKKEIKAVQTKFGLNTVI 482 Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLK 552 G RRT+F EV+ ++ A I KEPIT++ S GW+RSLK H+ DLS + +KEGD+ K Sbjct: 483 GARRTSFEEVTLTNQVVDITAFITKEPITIICSKMGWVRSLKGHNTDLSTIKYKEGDAEK 542 Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612 L A+TTD+IL++S++G+ +TL A N+ G+G GE+I+LL+D+ +N DI VY Sbjct: 543 FILEAYTTDKILIVSSEGRFFTLLADNISKGKGTGESIKLLVDIGNN-DITNILVYKPDQ 601 Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLI 672 LL+ SS G F+V +E++A T+ GK + + + V GD +A +GE+RKLL+ Sbjct: 602 LLLLASSVGKGFLVNSNEVMAQTKTGKQIMNIPDGHACIACLPVNGDSIACIGESRKLLV 661 Query: 673 FSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGK 732 F+ID+IPEM +G+GV LQ +K+ + D+ F +GL W ++ G+ + E +++ +LGK Sbjct: 662 FNIDEIPEMKKGQGVTLQKFKNAKLLDIKIFNKEDGLGW-NNNGKV--KLEKNIVAFLGK 718 Query: 733 RGGVGSLVPKGFPRSGKFLS 752 RG G L P GFP++ +F S Sbjct: 719 RGNTGKLPPMGFPKNNRFSS 738 >gi|254420694|ref|ZP_05034418.1| DNA topoisomerase IV, A subunit [Brevundimonas sp. BAL3] gi|196186871|gb|EDX81847.1| DNA topoisomerase IV, A subunit [Brevundimonas sp. BAL3] Length = 737 Score = 774 bits (1999), Expect = 0.0, Method: Compositional matrix adjust. Identities = 375/720 (52%), Positives = 503/720 (69%), Gaps = 7/720 (0%) Query: 25 ALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIG 84 AL RYLAYALSTI RA+PD+RDGFKPVHRRI++AM +M L+ AA +K A++VGEV+G Sbjct: 21 ALSRRYLAYALSTITNRALPDVRDGFKPVHRRILYAMHQMRLNPQAAARKCAKVVGEVMG 80 Query: 85 KLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELIL 144 HPHGD S+Y++LVRLAQ F QRYPL+ GQGNFGNIDGDSAAA RYTE ++T A L+L Sbjct: 81 GYHPHGDASIYEALVRLAQDFAQRYPLVDGQGNFGNIDGDSAAAMRYTECKLTPAAVLLL 140 Query: 145 QGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAAL 204 G+D+D+VDFR TY+++D EPVV P+ FPNLLANG+SGIAVGMATSIP HNV E+ +A Sbjct: 141 DGIDQDSVDFRATYDDQDEEPVVLPAGFPNLLANGSSGIAVGMATSIPPHNVGELIDACQ 200 Query: 205 ALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRG 264 L+D PE + +L++ + GPDFPTGG+ VE SI+++Y GRGG R+RARW E++GRG Sbjct: 201 MLLDRPEATTAELVQLVPGPDFPTGGVAVEGHASILDAYETGRGGVRLRARWETEDLGRG 260 Query: 265 SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDL 324 W I+VTE+PYQVQKSRLIE +A+LI K+ PLL D+RDESAED+R++L PKNR+++P++ Sbjct: 261 VWRIIVTEMPYQVQKSRLIEALADLIEHKKAPLLGDVRDESAEDIRLILEPKNRTIEPEM 320 Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384 LMES+F LSD+E RFP+NMNVL P+VM L L+ +L HRREVL RRS +R+ ++ Sbjct: 321 LMESLFKLSDLEVRFPINMNVLDADGTPRVMGLKACLRAFLDHRREVLNRRSQWRIARVE 380 Query: 385 RRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEE 444 +R+ +L+GL I +LNIDE+I I+R E++PK V+++RF LTE Q D IL+ RLR L +LEE Sbjct: 381 KRLHLLEGLRIVFLNIDEVIRIVREEEQPKAVLIARFGLTEVQADFILDTRLRQLARLEE 440 Query: 445 YQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSR 504 I+ E L E + +L +S +QW I+ E+ V++ + RRTT + Sbjct: 441 MTIEKEFKALSEELAHLQALTSSEGKQWKAISKELEAVRKAL-----ISPRRTTIADAVD 495 Query: 505 ADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRIL 564 +A I +E ITV++S RGWIR+ K D S L FKEGD L + A+TTD++L Sbjct: 496 TSAFVAPEAFIPREAITVILSERGWIRAAKGKVEDPSELKFKEGDQLAYLVPAYTTDKLL 555 Query: 565 LLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAF 624 + ++DG+ +T+ A L SGRGHGE ++L+IDL+ +I+ + KLL+ S G F Sbjct: 556 VGASDGRIFTIGADKLASGRGHGEPLRLMIDLDEKAEIINVLAHQPGGKLLIASKAGYGF 615 Query: 625 IVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRG 684 I E + +A R GK L +++ T DHVA +GEN K LIF +D++PEM RG Sbjct: 616 IAPEDDTLAQKRGGKQVLNGDMLAMLRIPQTPTADHVATIGENIKTLIFPLDELPEMGRG 675 Query: 685 KGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGF 744 KGVRLQ++K GG++DV F +G W D GR R+ D WLGKR G G P+G Sbjct: 676 KGVRLQNFKQGGLADVTVFNAEQGPEWADGGGR--RRNWPDWKDWLGKRAGAGRQGPRGL 733 >gi|87200806|ref|YP_498063.1| DNA topoisomerase IV subunit A [Novosphingobium aromaticivorans DSM 12444] gi|87136487|gb|ABD27229.1| DNA topoisomerase IV subunit A [Novosphingobium aromaticivorans DSM 12444] Length = 761 Score = 774 bits (1999), Expect = 0.0, Method: Compositional matrix adjust. Identities = 381/741 (51%), Positives = 516/741 (69%), Gaps = 16/741 (2%) Query: 25 ALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIG 84 AL ERYL YALSTI R++PDLRDG KPVHRR++ AM ++ LD AFKKSAR+VG+VIG Sbjct: 22 ALSERYLVYALSTITARSLPDLRDGLKPVHRRLLWAMRQLKLDPAQAFKKSARVVGDVIG 81 Query: 85 KLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELIL 144 K HPHGD SVYD++VRLAQ + RYPL+ GQGNFGNIDGD+AAAYRYTEAR+T+ A ++ Sbjct: 82 KYHPHGDASVYDAMVRLAQDWALRYPLVEGQGNFGNIDGDNAAAYRYTEARLTKTAIQLM 141 Query: 145 QGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAAL 204 G+DE VDF TYN E+ EP +FP FPNLLANG+SGIAVGMAT+IPSHNV EI +A L Sbjct: 142 SGLDEGTVDFVPTYNGEEEEPEIFPGLFPNLLANGSSGIAVGMATNIPSHNVAEIIDATL 201 Query: 205 ALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC------- 257 LIDNP +L+E GPD PTGG+IV+S I +Y GRG RVR R+ Sbjct: 202 LLIDNPHAEHAQLMEVFHGPDLPTGGVIVDSPAVISNAYETGRGAIRVRGRFSTGRDEAG 261 Query: 258 ------VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311 +E++G G W +VV+EIPY VQK +LIE+IA+LI K++P+LEDIRDES E +R+ Sbjct: 262 NWEESGIEKLGGGQWQLVVSEIPYMVQKGKLIEQIAQLIADKKLPILEDIRDESDEQIRL 321 Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371 VL PK+R++DPDLL ES++ L+D+ETRF LN+NVL R P V+ L +L+EW+ + ++ Sbjct: 322 VLIPKSRNVDPDLLKESLYRLTDLETRFGLNLNVLDSRRTPGVLGLKLVLQEWVISQIDI 381 Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431 L RRS R+ I R+E+L+G +IAYLN+D II IIR ED+PKPVM++ F LT+ Q +AI Sbjct: 382 LLRRSRHRLDKIASRLELLEGYIIAYLNLDRIIEIIRTEDEPKPVMMAEFELTDRQAEAI 441 Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491 LN+RLRSLRKLEE +++ E D LLAE+E++ LL+S +Q ++ ++ +++ +++ T Sbjct: 442 LNMRLRSLRKLEEMELRKERDALLAEQEELQKLLDSPARQRTRLKRDLAALRKDYAEDTA 501 Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551 LGRRRTT E + + ++ AMIEKEP+TV++S +GWIR+ K H FKEGD Sbjct: 502 LGRRRTTIAEAAPTREFSM-DAMIEKEPVTVILSAKGWIRAAKGHVPLDGDFKFKEGDGP 560 Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611 ALH TTD++L+ +G+ YTL A L RG GE I+ ++D++ + IV+ Y Sbjct: 561 AFALHCQTTDKLLVAVDNGRFYTLGADKLPGARGFGEPIRTMVDIDPDAQIVSVLPYKPK 620 Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--DHVAVVGENRK 669 +LL+ ++ G F E E++A TRKG+ + K+ +V ++ DHVAV+GENRK Sbjct: 621 GQLLLAANTGRGFAAEMDELLAETRKGRGVVSTKPGVKLAVVREIAPEHDHVAVIGENRK 680 Query: 670 LLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGW 729 L+IF++ ++P +++G+GV LQ YKDG +SDVI ++ +GLTW R E DLL W Sbjct: 681 LVIFALSEVPLLAKGQGVTLQRYKDGEMSDVITLRLEDGLTWAMGGESGRTRVEKDLLPW 740 Query: 730 LGKRGGVGSLVPKGFPRSGKF 750 RG G L P GFPR +F Sbjct: 741 KVARGAAGRLPPNGFPRDNRF 761 >gi|255263069|ref|ZP_05342411.1| DNA topoisomerase IV, A subunit [Thalassiobium sp. R2A62] gi|255105404|gb|EET48078.1| DNA topoisomerase IV, A subunit [Thalassiobium sp. R2A62] Length = 771 Score = 773 bits (1997), Expect = 0.0, Method: Compositional matrix adjust. Identities = 393/753 (52%), Positives = 530/753 (70%), Gaps = 28/753 (3%) Query: 22 LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81 LR A+ ERYL YALSTI RA+PD RDG KPVHRRI++AM E+ L F+KSA+I G+ Sbjct: 22 LRRAIGERYLTYALSTIMHRALPDARDGLKPVHRRILYAMRELRLSATGGFRKSAKISGD 81 Query: 82 VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE 141 V+G HPHGD ++YD++ RLAQ F RYPL+ GQGNFGNIDGD+ AA RYTEARMT AE Sbjct: 82 VMGNYHPHGDAAIYDAMARLAQDFAVRYPLVDGQGNFGNIDGDNPAASRYTEARMTAAAE 141 Query: 142 LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICE 201 +L+G++E+AVD+R+ Y+ +EPVV P+ FPNLLANG+SGIAVGMAT+IP HN+ E+ + Sbjct: 142 ALLEGLNENAVDYRENYDGTLTEPVVLPATFPNLLANGSSGIAVGMATNIPPHNIPELVD 201 Query: 202 AALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEV 261 A L LI P E L+E + GPDFPTGG+IVE +E+I+ +Y GRG FR+R +W +E++ Sbjct: 202 ACLHLIKAPNARDETLIEMVPGPDFPTGGVIVEPKENILNAYATGRGSFRLRCKWEIEKL 261 Query: 262 GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLD 321 RG W IVVTEIPYQVQKS+LIEKIAE+I K+IP+L D+RDESA+DVR+V+ PK++++D Sbjct: 262 DRGQWQIVVTEIPYQVQKSKLIEKIAEVIQLKKIPILADVRDESADDVRMVIEPKSKNVD 321 Query: 322 PDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQ 381 P++LM ++ SD+E RF +NMNVL G P+V L +L+ +L HRREVL RRS RM Sbjct: 322 PEVLMNMLYRNSDLEVRFSMNMNVLIDGLTPKVCSLKEVLRAFLDHRREVLIRRSQHRMA 381 Query: 382 AIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK-----------------------PVMV 418 ID R+E+L+G ++A+LN+D +I IIR +D PK P + Sbjct: 382 KIDHRLEVLEGFIVAFLNLDRVIDIIRYDDDPKAALIREDWSLTHKRAMDETDYLSPALR 441 Query: 419 SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE 478 L+E Q +AILN+RLRSLR+LEE ++ E L+ E+ +++ LL+S QW++I+ + Sbjct: 442 DEEGLSEVQAEAILNMRLRSLRRLEELELLREQSALMEERAELEDLLDSDDLQWSRISEQ 501 Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV 538 +RE ++ F K+ G RRT F E + + + +AMIE+EPIT+V S GW+R+L H V Sbjct: 502 LRETRKQFGKNYKGGARRTLFAEAAEVEDVPI-EAMIEREPITIVCSKMGWVRALSGH-V 559 Query: 539 DLS-ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLN 597 DL+ L FK+GD + HA TTDR+L+ T+G+ YT+ A NL GRG GE ++L++DL Sbjct: 560 DLARELKFKDGDEARFMFHAETTDRLLVFGTNGRFYTVSASNLPGGRGMGEPLRLMVDLP 619 Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657 + DIV F++ KLLV SS G+ FIV E+++IA TR GK L V K+ + VT Sbjct: 620 NEADIVDFFIHQPERKLLVASSAGDGFIVPEADVIAQTRTGKQVLNVKDGVMAKVCITVT 679 Query: 658 GDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGR 717 GDHVA VGENRK+L+F I+++PEM RGKGVRLQ YKDGG+SDV F + GL+W D AGR Sbjct: 680 GDHVACVGENRKVLVFPIEELPEMGRGKGVRLQKYKDGGLSDVATFTMAGGLSWQDPAGR 739 Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750 + R+E +L W GKR G + P+GFPR +F Sbjct: 740 T--RTETELAEWAGKRASAGRMAPRGFPRDNRF 770 >gi|165932663|ref|YP_001649452.1| DNA topoisomerase IV subunit A [Rickettsia rickettsii str. Iowa] gi|165907750|gb|ABY72046.1| topoisomerase IV subunit A [Rickettsia rickettsii str. Iowa] Length = 738 Score = 773 bits (1996), Expect = 0.0, Method: Compositional matrix adjust. Identities = 373/739 (50%), Positives = 531/739 (71%), Gaps = 4/739 (0%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 E ++ + AL ERYLAYALSTI R++PD+RDG KPVHRR+++AM ++ L+ + +K Sbjct: 3 EAKIENIDFGNALSERYLAYALSTIMSRSLPDVRDGLKPVHRRLLYAMLQLRLEPNSGYK 62 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 K AR+VG+VIGK HPHGD +VYD+LVRLAQ F RYPLI GQGNFG+IDGD+AAA RYTE Sbjct: 63 KCARVVGDVIGKYHPHGDVAVYDTLVRLAQHFSLRYPLIDGQGNFGSIDGDNAAAMRYTE 122 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 +RMT + L+++ +D+D VDFR TY+ D EPV+ P+ FPNLLANG+ GIAVGMAT+IP Sbjct: 123 SRMTDICTLLMEDIDKDTVDFRPTYDGSDLEPVIMPASFPNLLANGSEGIAVGMATNIPP 182 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E+C+A + LI+ P+ I ++ ++ GPDFPTGGII++ E I +Y GRG RVR Sbjct: 183 HNLHELCDALIHLINYPKAEINDIMNFVKGPDFPTGGIIIDKAEVINAAYTTGRGSLRVR 242 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313 +RW EE+ G++ IVVTEIPYQVQKS+LIE+IA L+ K+IPL+ +IRDES + +R+V+ Sbjct: 243 SRWEKEELSYGTYQIVVTEIPYQVQKSKLIEQIAILLKDKKIPLVSNIRDESTDIIRLVI 302 Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373 P++R DP ++MES+F L+++E+R LNMNV+ VP+VM + IL+E+L HR+ ++ Sbjct: 303 EPRDRGCDPQIVMESLFKLTNLESRIQLNMNVIGSNNVPRVMNILEILQEFLYHRQNIVT 362 Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILN 433 RRS++ + I R+EILKGL IAYLN+DEII IIR ED+PK +++ RF LTE QV+AILN Sbjct: 363 RRSTYLLNKIKHRLEILKGLRIAYLNLDEIITIIREEDEPKAIIMERFKLTEIQVEAILN 422 Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493 RLRSLRKLEE +I +E NL ++ ++ +LN+ K+ W + EI+ V+ F +T +G Sbjct: 423 TRLRSLRKLEEQEIINEHSNLQKQQAILEEILNNPKELWKIVKKEIKTVQTKFGLNTVIG 482 Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKI 553 RRT+F EV+ ++ A I KEPIT++ S GW+RSLK H+ DLS + +KEGD+ K Sbjct: 483 ARRTSFEEVTFTNQVVDITAFITKEPITIICSKMGWVRSLKGHNTDLSTIKYKEGDAEKF 542 Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613 L A+TTD+IL++S++G+ +TL A N+ G+G GE+I+LL+D+ +N DI VY Sbjct: 543 ILEAYTTDKILIVSSEGRFFTLLADNISKGKGTGESIKLLVDIGNN-DITNILVYKPDQL 601 Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIF 673 LL+ SS G F+V +E++A T+ GK + V + V GD +A +GE+RKLL+F Sbjct: 602 LLLASSVGKGFLVNSNEVMAQTKTGKQIMNVPDGHVCIACLPVNGDSIACIGESRKLLVF 661 Query: 674 SIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKR 733 +ID+IPEM +G+GV LQ +K+ + D+ F +GL W ++ G+ + E +++ +LGKR Sbjct: 662 NIDEIPEMKKGQGVTLQKFKNAKLLDIKIFNKEDGLGW-NNNGKV--KLEKNIVAFLGKR 718 Query: 734 GGVGSLVPKGFPRSGKFLS 752 G G L P GFP++ +F S Sbjct: 719 GSTGKLPPMGFPKNNRFSS 737 >gi|148553035|ref|YP_001260617.1| DNA topoisomerase IV subunit A [Sphingomonas wittichii RW1] gi|148498225|gb|ABQ66479.1| DNA topoisomerase IV subunit A [Sphingomonas wittichii RW1] Length = 750 Score = 773 bits (1995), Expect = 0.0, Method: Compositional matrix adjust. Identities = 377/744 (50%), Positives = 518/744 (69%), Gaps = 7/744 (0%) Query: 12 LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71 L E++V+ AL +RYL YALSTI R++PD+RDG KPVHRR++ AM + LD + Sbjct: 7 LPEDSVRNTPFDSALSDRYLVYALSTITARSLPDVRDGLKPVHRRLLWAMRLLRLDPASG 66 Query: 72 FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131 +KK AR+VG+VIGK HPHGDQSVYD++VRLAQ F RYPL+ GQGNFGN+DGD+AAA RY Sbjct: 67 YKKCARVVGDVIGKYHPHGDQSVYDAMVRLAQTFSLRYPLVDGQGNFGNVDGDNAAAMRY 126 Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191 TEAR+T A ++ G+DE VDFR TYN E+ EP +FP FPNLLANG SGIAVGMATSI Sbjct: 127 TEARLTAAAGELMAGLDEGTVDFRPTYNGEEEEPEIFPGLFPNLLANGASGIAVGMATSI 186 Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251 P HNV E+ +AA+ LID PE +LL+++ GPDFPTGG++V+S +I E+Y GRG FR Sbjct: 187 PPHNVAELIDAAVLLIDKPEAETAELLDHVKGPDFPTGGVLVDSPATIAEAYATGRGAFR 246 Query: 252 VRARW-CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310 VRA+ V+E G G W +VV++IPYQVQKS+LIE+IAELI K++P+L D+RDES E++R Sbjct: 247 VRAKIEKVDEKG-GGWHLVVSQIPYQVQKSKLIEQIAELINDKKLPILADVRDESDEEIR 305 Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370 IVL P++R++D D+LMES+F L+++E R LN+NVL R P VM L L WL H+ E Sbjct: 306 IVLEPRSRTVDADMLMESLFRLTELEVRVSLNLNVLDDTRTPLVMSLKQALAAWLKHQFE 365 Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDA 430 VL RRS R+ I R+E+L G LI YLN+D +I IIR ED+PKPVM++ F LT+ Q +A Sbjct: 366 VLIRRSQHRLAKIADRIELLDGYLIVYLNLDRVIQIIREEDEPKPVMMAEFGLTDRQAEA 425 Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490 ILN+RLRSLR+LEE ++ E L AE +++++L+ S +Q ++ ++ ++E + T Sbjct: 426 ILNMRLRSLRRLEEMELTRERATLDAEGKELEALIASPARQRTRMKRDLAALRERYGPET 485 Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSH--SVDLSALHFKEG 548 LG RRT E + A + L +AM+E+EP+TV++S RGWIR++K H +A+ FKEG Sbjct: 486 ALGARRTLLSEAAPAREIPL-EAMVEREPVTVILSQRGWIRAMKGHLDEAAQAAVKFKEG 544 Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608 D A+ A TTDRILL + G+ YTLPA L GRG GE ++L D++ + + Sbjct: 545 DGPAHAIRAQTTDRILLATDQGRFYTLPADKLPGGRGFGEPVRLFADIDADARVAALLAA 604 Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV--VKVTGDHVAVVGE 666 +LL+ S G F+V+ +++ A TRKGK + + ++K+V V T D+VA +G+ Sbjct: 605 KPGAELLLASGDGKGFVVDMADVTAETRKGKQVVNLREGGRLKVVHPVAPTDDYVAAIGD 664 Query: 667 NRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDL 726 NRK++IF + ++P M+RG+GV +Q YKDGG+SD I F++ +GL+W R+E DL Sbjct: 665 NRKMVIFPLGELPRMARGQGVTIQRYKDGGLSDAISFRLDDGLSWTMGGDTGRTRTEADL 724 Query: 727 LGWLGKRGGVGSLVPKGFPRSGKF 750 W RG G + P GFPR +F Sbjct: 725 TPWRAARGAAGRMPPVGFPRDNRF 748 >gi|307295585|ref|ZP_07575421.1| DNA topoisomerase IV, A subunit [Sphingobium chlorophenolicum L-1] gi|306878624|gb|EFN09844.1| DNA topoisomerase IV, A subunit [Sphingobium chlorophenolicum L-1] Length = 762 Score = 773 bits (1995), Expect = 0.0, Method: Compositional matrix adjust. Identities = 379/745 (50%), Positives = 516/745 (69%), Gaps = 20/745 (2%) Query: 25 ALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA------------- 71 AL +RYL YALSTI R++PDLRDG KPVHRR++ AM + ++ G A Sbjct: 19 ALSQRYLVYALSTITARSLPDLRDGLKPVHRRLLWAMRLLRMEPGGASPDVLVANPARNT 78 Query: 72 --FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129 +KK AR+VG+VIGK HPHGD SVYD++VRLAQ F R PL+ GQGNFGNIDGD+AAA Sbjct: 79 TSYKKCARVVGDVIGKYHPHGDASVYDAMVRLAQDFSLRTPLVDGQGNFGNIDGDNAAAM 138 Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189 RYTEAR+TQ A ++ G+DE V+FR TYN ED EP VFP FPNLLANG +GIAVGMAT Sbjct: 139 RYTEARLTQAAADLMAGLDEGTVEFRPTYNGEDQEPEVFPGLFPNLLANGATGIAVGMAT 198 Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249 SIP HNV E+ +AA LIDNP+ L++ + GPDFPTGG++V+S I E+Y GRG Sbjct: 199 SIPPHNVSELIDAASLLIDNPDAEHADLMQVVRGPDFPTGGVLVDSASIISEAYATGRGS 258 Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309 FR RARW E+ GRG+W VVT+IP+QVQKS+LIE+IA LI +++P+L D+RDES E + Sbjct: 259 FRTRARWHKEDGGRGTWVAVVTQIPFQVQKSKLIEQIAALINDRKLPILADVRDESDEQI 318 Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369 RIV+ P+ R++DPDLLM+S+F L+D+E RFPLN+NVL R P+V+ L +L EWL H+ Sbjct: 319 RIVIEPRGRTVDPDLLMDSLFRLTDLENRFPLNLNVLDATRTPRVLGLKPVLIEWLKHQI 378 Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429 +VL +R+ R+ I R+E+L G +IAYLN+D +I IIR ED+PK VM++ F L + Q + Sbjct: 379 DVLVKRAQHRLDKIAARLELLDGYIIAYLNLDRVIEIIRTEDEPKEVMMAEFGLNDRQAE 438 Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489 AILN+RLRSLRKLEE +++ E LL E++ + L+ S +Q ++ ++ ++++ +S Sbjct: 439 AILNMRLRSLRKLEEMELRREHSELLKERDDLLKLVESPARQRTRLKKDLADLRKRYSPD 498 Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA--LHFKE 547 +D GRRRT E + A + L +AMIEKEPITV++S RGWIR++ H SA L FKE Sbjct: 499 SDFGRRRTLVEEAAPAREIPL-EAMIEKEPITVILSERGWIRAMSGHRDLASADTLKFKE 557 Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV 607 GD IA HA TTD++LL + G+ +TL A L GRG G+ ++ L+D++ IV Sbjct: 558 GDGPMIAFHAQTTDKLLLATETGRIFTLGADKLPGGRGFGDPVRSLVDMDGTGQIVALMP 617 Query: 608 YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV--VKVTGDHVAVVG 665 + +LL+ SS G F+ +++IA TRKGK + V + K+ +V + D VAVVG Sbjct: 618 ARTGGELLLASSDGRGFVAAVADVIAETRKGKQVVNVRTGAKLSVVHPIAADADSVAVVG 677 Query: 666 ENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSEND 725 ENRKLL+FS+ ++P M+RG+GV++Q Y+DGG+SD I F++ +GL+W G R+E D Sbjct: 678 ENRKLLVFSLIEMPRMARGQGVQMQRYRDGGLSDAIAFRLSDGLSWAMGGGSGRVRTEAD 737 Query: 726 LLGWLGKRGGVGSLVPKGFPRSGKF 750 + W RG G + P GFPR +F Sbjct: 738 MTPWRVARGAAGRMPPTGFPRDNRF 762 >gi|103487589|ref|YP_617150.1| DNA topoisomerase IV subunit A [Sphingopyxis alaskensis RB2256] gi|98977666|gb|ABF53817.1| DNA topoisomerase IV subunit A [Sphingopyxis alaskensis RB2256] Length = 777 Score = 773 bits (1995), Expect = 0.0, Method: Compositional matrix adjust. Identities = 371/743 (49%), Positives = 517/743 (69%), Gaps = 18/743 (2%) Query: 25 ALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIG 84 AL +RYL YALSTI R++PDLRDG KPVHRR++ AM M LD +KKSAR+VG+VIG Sbjct: 35 ALSQRYLVYALSTITARSLPDLRDGLKPVHRRLLWAMRAMRLDPSQGYKKSARVVGDVIG 94 Query: 85 KLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELIL 144 K HPHGD +VYD++VRLAQ F RYPL+ GQGNFGNIDGD+AAAYRYTEAR+T+VA ++ Sbjct: 95 KFHPHGDTAVYDAMVRLAQDFSLRYPLVDGQGNFGNIDGDNAAAYRYTEARLTRVAVDLM 154 Query: 145 QGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAAL 204 QG+DE VDFR TYN ED EP + P FPNLLANG SGIAVGMAT+IP HN E+ +AAL Sbjct: 155 QGLDEGTVDFRPTYNGEDEEPEIMPGLFPNLLANGASGIAVGMATNIPPHNAAEVIDAAL 214 Query: 205 ALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC------- 257 LIDNP+ + LL+++ GPDFPTGGI+ E+ E+I ++Y GRG FRVRAR+ Sbjct: 215 LLIDNPKAGLSDLLDHVKGPDFPTGGIVAENAETIAQAYESGRGSFRVRARFSIGKDADG 274 Query: 258 ------VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311 +E++ G+W +V++EIPY V K +LIE++A+LI +++P+LED+RDESAED+RI Sbjct: 275 KWEADGIEKLSGGTWQLVISEIPYGVAKGKLIEQVAQLIADRKLPILEDVRDESAEDLRI 334 Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371 VL PK+R++D ++L +S++ L+D+E+RF LN+NVL R P+VM L +L EWL H+ V Sbjct: 335 VLVPKSRNVDAEVLKDSLYRLTDLESRFALNLNVLDATRTPKVMGLKQLLTEWLQHQIIV 394 Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431 L RR+ R+ ID R+E++ G +IA+LN+D II IIR ED+PKPVM++ F LT+ Q +AI Sbjct: 395 LVRRAEHRIAKIDDRLELVAGYIIAFLNLDRIIEIIRTEDEPKPVMIAEFELTDRQAEAI 454 Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491 LN+RLRSLRKLEE ++K E +L AE+E++ L+ S +Q ++ ++ ++ ++ T Sbjct: 455 LNMRLRSLRKLEEMELKREQTDLTAEREELAKLVESPARQRTRLRKDLERLRGVYGLDTS 514 Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--DLSALHFKEGD 549 LG RRTT E + + L AMIEKEP+TV++S RGWIR+ + H FKEGD Sbjct: 515 LGARRTTIAEAAPTREIPL-DAMIEKEPVTVILSKRGWIRAQRGHVAPDQWGEFKFKEGD 573 Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609 L A HA TTD++L+ ++DG+ +T+ A L GRG GE ++L++D++ + IV Sbjct: 574 ELLFAAHAQTTDKLLIAASDGRFFTVGADKLPGGRGFGEPLRLMVDIDPDARIVAMVPAS 633 Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT--GDHVAVVGEN 667 + +LL+ S+ G+ FIV ++ A TRKG+ + + + + + D VAVVG+N Sbjct: 634 AGGRLLLASTSGHGFIVNTDDVTAETRKGRNVVNLKPRAALVVARPIAPGDDSVAVVGDN 693 Query: 668 RKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLL 727 RKL++F + ++P M RG+GV LQ Y+DGG+SD + F + EGL+W R+E DL Sbjct: 694 RKLVVFPLAEVPVMGRGQGVMLQRYRDGGLSDAVSFVLAEGLSWAMGGDSGRTRTETDLA 753 Query: 728 GWLGKRGGVGSLVPKGFPRSGKF 750 W RG G + P GFPR+ +F Sbjct: 754 PWRVARGAAGRMPPTGFPRNNRF 776 >gi|167645708|ref|YP_001683371.1| DNA topoisomerase IV subunit A [Caulobacter sp. K31] gi|167348138|gb|ABZ70873.1| DNA topoisomerase IV, A subunit [Caulobacter sp. K31] Length = 759 Score = 771 bits (1992), Expect = 0.0, Method: Compositional matrix adjust. Identities = 380/735 (51%), Positives = 520/735 (70%), Gaps = 12/735 (1%) Query: 25 ALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIG 84 AL +RYLAYALSTI RA+PD+RDG KPVHRR++HAM+ M L+ +K A++VGEV+G Sbjct: 25 ALSKRYLAYALSTIGSRALPDVRDGLKPVHRRVLHAMNNMRLNPEGGARKCAKVVGEVMG 84 Query: 85 KLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELIL 144 HPHGDQS+YD+LVRLAQ F QR PL+ GQGNFGNIDGDSAAA RYTE +MT A L+L Sbjct: 85 NFHPHGDQSIYDALVRLAQEFSQRVPLVDGQGNFGNIDGDSAAAMRYTECKMTAAAVLLL 144 Query: 145 QGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAAL 204 G+DEDAVDF+ +Y+ +D EPVV PS FPNLLANG+SGIAVGMATSIP HN E+ +A L Sbjct: 145 DGIDEDAVDFKPSYDGQDEEPVVLPSGFPNLLANGSSGIAVGMATSIPPHNPAELIDACL 204 Query: 205 ALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRG 264 L+ PE + ++LE + GPDFPTGG+IVESRES++E+Y GRGG R RA+W E+ GRG Sbjct: 205 LLLSKPEATTAEILERVPGPDFPTGGVIVESRESLLETYETGRGGVRTRAKWEKEDTGRG 264 Query: 265 SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDL 324 ++ IVVTEIPYQV+KS L+E++A+LI +K+ LL D+RDESAED+R+VL PK+++++P++ Sbjct: 265 TYQIVVTEIPYQVKKSDLVEQLADLIDSKKAALLGDVRDESAEDIRLVLEPKSKNVEPEV 324 Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384 LMES+F LS +E+RFP+N+NVL P VM + L +LAHRR+VL RR+ R+ I+ Sbjct: 325 LMESLFKLSALESRFPVNINVLDARGTPGVMGIKQALIAFLAHRRDVLTRRARNRLSKIE 384 Query: 385 RRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEE 444 R+ IL GLLIAYLN+DE+I I+R ED+PK +++ F+L++ Q DAILN RLR L KLEE Sbjct: 385 ARLHILDGLLIAYLNLDEVIRIVRYEDEPKQKLMAAFALSDIQADAILNTRLRQLAKLEE 444 Query: 445 YQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST----DLGRR----- 495 +I+ E L+ E++ I ++L S K+QW+ + +R+V+ + K GR Sbjct: 445 MEIRREHAQLVEERDGILAMLASDKKQWDLVGTGLRQVRAVLLKIKHPLDKTGRATGVIG 504 Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555 R+ F + D +A+I +EPITV++S+RGWIR+ K D S L FKEGD L + Sbjct: 505 RSVFEDAPVVDAEAALEALIVREPITVILSDRGWIRAAKGKVEDPSELKFKEGDKLGFLV 564 Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615 A TTD++LL ++DG+ +T+ NL S RGHGE ++++I+L+ I+ F + + K Sbjct: 565 PAETTDKLLLFTSDGRFFTIGCANLPSARGHGEPVRMMIELDDKVKIIDVFPFKAGRKRF 624 Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSI 675 + S +G F++ E E +AN + GK L V + ++ GD +AVVG+N K+LIF + Sbjct: 625 LASKQGYGFLMPEEEALANRKAGKQVLTVDA-AGAAFCLEAVGDQLAVVGDNGKILIFPL 683 Query: 676 DQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGG 735 +++PEM RGKGV+LQSY++GG+ D I F G WID+AGR R + W+GKR G Sbjct: 684 EELPEMPRGKGVKLQSYREGGLRDAISFNADVGAFWIDTAGR--RRDWVEWRDWIGKRAG 741 Query: 736 VGSLVPKGFPRSGKF 750 G L PKGFP S +F Sbjct: 742 AGKLSPKGFPTSKRF 756 >gi|157827971|ref|YP_001494213.1| DNA topoisomerase IV subunit A [Rickettsia rickettsii str. 'Sheila Smith'] gi|157800452|gb|ABV75705.1| DNA topoisomerase IV subunit A [Rickettsia rickettsii str. 'Sheila Smith'] Length = 738 Score = 771 bits (1992), Expect = 0.0, Method: Compositional matrix adjust. Identities = 373/739 (50%), Positives = 530/739 (71%), Gaps = 4/739 (0%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 E ++ + AL ERYLAYALSTI R++PD+RDG KPVHRR+++AM ++ L+ + +K Sbjct: 3 EAKIENIDFGNALSERYLAYALSTIMSRSLPDVRDGLKPVHRRLLYAMLQLRLEPNSGYK 62 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 K AR+VG+VIGK HPHGD +VYD+LVRLAQ F RYPLI GQGNFG+IDGD+AAA RYTE Sbjct: 63 KCARVVGDVIGKYHPHGDVAVYDTLVRLAQHFSLRYPLIDGQGNFGSIDGDNAAAMRYTE 122 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 +RMT + L+++ +D+D VDFR TY+ D EPV+ P+ FPNLLANG+ GIAVGMAT+IP Sbjct: 123 SRMTDICTLLMEDIDKDTVDFRPTYDGSDLEPVIMPASFPNLLANGSEGIAVGMATNIPP 182 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E+C+A + LI+ P+ I ++ ++ GPDFPTGGII++ E I +Y GRG RVR Sbjct: 183 HNLHELCDALIHLINYPKAEINDIMNFVKGPDFPTGGIIIDKAEVINAAYTTGRGSLRVR 242 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313 +RW EE+ G++ IVVTEIPYQVQKS+LIE+IA L+ K+IPL+ +IRDES + +R+V+ Sbjct: 243 SRWEKEELSYGTYQIVVTEIPYQVQKSKLIEQIAILLKDKKIPLVSNIRDESTDIIRLVI 302 Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373 P++R DP ++MES+F L+++E+R LNMNV+ VP+VM + IL+E+L HR+ ++ Sbjct: 303 EPRDRGCDPQIVMESLFKLTNLESRIQLNMNVIGSNNVPRVMNILEILQEFLYHRQNIVT 362 Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILN 433 RRS++ + I R+EILKGL IAYLN+DEII IIR ED+PK +++ RF LTE QV+AILN Sbjct: 363 RRSTYLLNKIKHRLEILKGLRIAYLNLDEIITIIREEDEPKAIIMERFKLTEIQVEAILN 422 Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493 RLRSLRKLEE +I +E NL ++ ++ +LN+ K+ W + EI+ V+ F +T +G Sbjct: 423 TRLRSLRKLEEQEIINEHSNLQKQQAILEEILNNPKELWKIVKKEIKTVQTKFGLNTVIG 482 Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKI 553 RRT+F EV ++ A I KEPIT++ S GW+RSLK H+ DLS + +KEGD+ K Sbjct: 483 ARRTSFEEVMFTNQVVDITAFITKEPITIICSKMGWVRSLKGHNTDLSTIKYKEGDAEKF 542 Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613 L A+TTD+IL++S++G+ +TL A N+ G+G GE+I+LL+D+ +N DI VY Sbjct: 543 ILEAYTTDKILIVSSEGRFFTLLADNISKGKGTGESIKLLVDIGNN-DITNILVYKPDQL 601 Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIF 673 LL+ SS G F+V +E++A T+ GK + V + V GD +A +GE+RKLL+F Sbjct: 602 LLLASSVGKGFLVNSNEVMAQTKTGKQIMNVPDGHVCIACLPVNGDSIACIGESRKLLVF 661 Query: 674 SIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKR 733 +ID+IPEM +G+GV LQ +K+ + D+ F +GL W ++ G+ + E +++ +LGKR Sbjct: 662 NIDEIPEMKKGQGVTLQKFKNAKLLDIKIFNKEDGLGW-NNNGKV--KLEKNIVAFLGKR 718 Query: 734 GGVGSLVPKGFPRSGKFLS 752 G G L P GFP++ +F S Sbjct: 719 GSTGKLPPMGFPKNNRFSS 737 >gi|302383090|ref|YP_003818913.1| DNA topoisomerase IV subunit alpha [Brevundimonas subvibrioides ATCC 15264] gi|302193718|gb|ADL01290.1| DNA topoisomerase IV, A subunit [Brevundimonas subvibrioides ATCC 15264] Length = 733 Score = 771 bits (1992), Expect = 0.0, Method: Compositional matrix adjust. Identities = 372/720 (51%), Positives = 505/720 (70%), Gaps = 11/720 (1%) Query: 25 ALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIG 84 AL RYLAYALSTI RA+PD+RDGFKPVHRRI++AM +M L+ AA +K A++VGEV+G Sbjct: 21 ALSRRYLAYALSTITNRALPDVRDGFKPVHRRILYAMHQMRLNPQAAARKCAKVVGEVMG 80 Query: 85 KLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELIL 144 HPHGD S+YD+LVRLAQ F QRYPL+ GQGNFGNIDGD+AAA RYTE ++T + L++ Sbjct: 81 GYHPHGDASIYDALVRLAQDFAQRYPLVDGQGNFGNIDGDNAAAMRYTECKLTAASVLLM 140 Query: 145 QGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAAL 204 +G+D+D+VDFR TY+++D EP V P+ FPNLLANG+SGIAVGMATSIP HNV E+ +A L Sbjct: 141 EGIDQDSVDFRPTYDDQDEEPTVLPAGFPNLLANGSSGIAVGMATSIPPHNVGELIDACL 200 Query: 205 ALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRG 264 AL+D PE + +L E + GPDFPTGG+ VE SI+++Y GRGG R+RARW E + RG Sbjct: 201 ALLDRPETTTAELAEIVPGPDFPTGGVAVEGHASILDAYETGRGGVRLRARWEREPLERG 260 Query: 265 SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDL 324 + IV+TE+PYQVQKS+LIE +AELI K+ PLL D+RDESAED+R+V+ PK+R++D D Sbjct: 261 GYQIVITEVPYQVQKSKLIEALAELIEQKKAPLLGDVRDESAEDIRVVIDPKSRNIDADS 320 Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384 LMES+F LSD+E RFP+NMNVL P+VM L L+ +L HRREVL RRS++R++ ++ Sbjct: 321 LMESLFRLSDLEVRFPINMNVLDATGTPRVMGLKACLQAFLDHRREVLNRRSAWRIERVE 380 Query: 385 RRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEE 444 +R+ +L+GL I +LN+DE+I I+R E++PK V+++RF L+E Q D IL+ RLR L ++EE Sbjct: 381 KRLHLLEGLRIVFLNLDEVIRIVREEEQPKAVLIARFGLSETQADFILDTRLRQLARIEE 440 Query: 445 YQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSR 504 I++E L E + SL +S +QW +I E+ ++ + RRTT E Sbjct: 441 MTIENEYKALSEELASLQSLTSSPAKQWKKIGQELAATRKAL-----ISPRRTTIAEAVD 495 Query: 505 ADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRIL 564 A +A I +E ITV++S RGWIR++K D S L FKEGD+L + A TTD++L Sbjct: 496 ASAFVPAEAFIPREAITVILSERGWIRAVKGKVEDPSELKFKEGDALGFLVPAFTTDKLL 555 Query: 565 LLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAF 624 + ++DG+ +T+ A L SGRGHGE ++L+++L + IV + KLL+ S G F Sbjct: 556 VAASDGRVFTVGADKLASGRGHGEPLRLMVELEESAGIVAVLAHQPGAKLLIASKAGYGF 615 Query: 625 IVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRG 684 I E E++A R GK L + ++VTGDHV +GEN K LIF D++PEM RG Sbjct: 616 IAPEDELLAQKRGGKQVLN----GDLLAAIRVTGDHVVTIGENLKTLIFKADELPEMGRG 671 Query: 685 KGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGF 744 KGV+LQS+K GG++D+ F G W+D GR R+ D WLGKR G G + P+G Sbjct: 672 KGVKLQSFKQGGLTDIALFDGAHGPEWVDGGGR--RRNWPDWKDWLGKRAGAGRMGPRGL 729 >gi|15892020|ref|NP_359734.1| DNA topoisomerase IV subunit A [Rickettsia conorii str. Malish 7] gi|20139049|sp|Q92JH0|PARC_RICCN RecName: Full=DNA topoisomerase 4 subunit A; AltName: Full=Topoisomerase IV subunit A gi|15619136|gb|AAL02635.1| topoisomerase IV subunit A [Rickettsia conorii str. Malish 7] Length = 738 Score = 771 bits (1992), Expect = 0.0, Method: Compositional matrix adjust. Identities = 374/739 (50%), Positives = 531/739 (71%), Gaps = 4/739 (0%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 E V+ + AL ERYLAYALSTI R++PD+RDG KPVHRR+++AM ++ L+ + +K Sbjct: 3 EAKVENIDFGNALSERYLAYALSTIMSRSLPDVRDGLKPVHRRLLYAMLQLRLEPNSGYK 62 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 K AR+VG+VIGK HPHGD +VYD+LVRLAQ F RYPLI GQGNFG+IDGD+AAA RYTE Sbjct: 63 KCARVVGDVIGKYHPHGDVAVYDTLVRLAQHFSLRYPLIDGQGNFGSIDGDNAAAMRYTE 122 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 +RMT + L+++ +D+D VDFR TY+ D EPV+ P+ FPNLLANG+ GIAVGMAT+IP Sbjct: 123 SRMTDICTLLMEDIDKDTVDFRPTYDGSDLEPVIMPASFPNLLANGSEGIAVGMATNIPP 182 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E+C+A + LI++P+ I ++ ++ GPDFPTGGII++ E I +Y GRG RVR Sbjct: 183 HNLHELCDALIHLINHPKAEINDIINFVKGPDFPTGGIIIDKAEVINAAYTTGRGSLRVR 242 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313 +RW EE+ G++ IVVTEIPYQVQKS+LIE+IA L+ K+IPL+ +IRDES + +R+V+ Sbjct: 243 SRWEKEELSYGTYQIVVTEIPYQVQKSKLIEQIAILLKDKKIPLVSNIRDESTDIIRLVI 302 Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373 P++R DP ++MES+F L+++E+R LNMNV+ VP+VM + IL+E+L HR+ ++ Sbjct: 303 EPRDRGCDPQIVMESLFKLTNLESRIQLNMNVIGSNNVPRVMNILEILQEFLYHRQNIVT 362 Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILN 433 RRS++ + I R+EILKGL IAYLN+DEII IIR ED+PK +M+ F LTE QV+AILN Sbjct: 363 RRSTYLLNKIKHRLEILKGLRIAYLNLDEIIKIIREEDEPKAIMMEWFKLTEIQVEAILN 422 Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493 RLRSLRKLEE +I +E NL ++ ++ +LN+ K+ W + EI+ V+ F +T +G Sbjct: 423 TRLRSLRKLEEQEIINEHSNLQKQQAILEEILNNPKELWKIVKKEIKTVQTKFGLNTVIG 482 Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKI 553 RRT+F EV+ ++ A I KEPIT++ S GW+RSLK H+ DLS + +KEGD+ K Sbjct: 483 ARRTSFEEVTLTNQVVDITAFITKEPITIICSKMGWVRSLKGHNTDLSTIKYKEGDAEKF 542 Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613 L A+TTD+IL++S++G+ +TL A N+ G+G GE+I+LL+D+ +N DI VY Sbjct: 543 ILEAYTTDKILIVSSEGRFFTLLADNISKGKGTGESIKLLVDIGNN-DITNILVYKPDQL 601 Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIF 673 LL+ SS G F+V +E++A T+ GK + V + V GD +A +GE+RKLL+F Sbjct: 602 LLLASSVGKGFLVNSNEVMAQTKTGKQIMNVPDGHVCIACLPVNGDSIACIGESRKLLVF 661 Query: 674 SIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKR 733 +ID+IPEM +G+GV LQ +K+ + D+ F +GL W ++ G+ + E +++ +LGKR Sbjct: 662 NIDEIPEMKKGQGVTLQKFKNAKLLDIKIFNKEDGLGW-NNNGKV--KLEKNIVAFLGKR 718 Query: 734 GGVGSLVPKGFPRSGKFLS 752 G G L P GFP++ +F S Sbjct: 719 GSTGKLPPMGFPKNNRFSS 737 >gi|238650533|ref|YP_002916385.1| DNA topoisomerase IV subunit A [Rickettsia peacockii str. Rustic] gi|238624631|gb|ACR47337.1| DNA topoisomerase IV subunit A [Rickettsia peacockii str. Rustic] Length = 738 Score = 771 bits (1991), Expect = 0.0, Method: Compositional matrix adjust. Identities = 373/739 (50%), Positives = 531/739 (71%), Gaps = 4/739 (0%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 E+ ++ + AL ERYLAYALSTI R++PD+RDG KPVHRR+++AM ++ L+ + +K Sbjct: 3 EDKIENIDFGNALSERYLAYALSTIMSRSLPDVRDGLKPVHRRLLYAMLQLRLEPNSGYK 62 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 K AR+VG+VIGK HPHGD +VYD+LVRLAQ F RYPLI GQGNFG+IDGD+AAA RYTE Sbjct: 63 KCARVVGDVIGKYHPHGDVAVYDTLVRLAQHFSLRYPLIDGQGNFGSIDGDNAAAMRYTE 122 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 +RMT + L+++ +D+D VDFR TY+ D EPV+ P+ FPNLLANG+ GIAVGMAT+I Sbjct: 123 SRMTDICTLLMEDIDKDTVDFRPTYDGSDLEPVIMPASFPNLLANGSEGIAVGMATNILP 182 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E+C+A + LI++P+ I ++ ++ GPDFPTGGII++ E I +Y GRG RVR Sbjct: 183 HNLHELCDALIHLINHPKAEINDIMNFVKGPDFPTGGIIIDKAEVINAAYTTGRGSLRVR 242 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313 +RW EE+ G++ IVVTEIPYQVQKS+LIE+IA L+ K+IPL+ +IRDES + +R+V+ Sbjct: 243 SRWEKEELSYGTYQIVVTEIPYQVQKSKLIEQIAILLKDKKIPLVSNIRDESTDIIRLVI 302 Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373 P +R DP ++MES+F L+++E+R LNMNV+ VP+VM + IL+E+L HR+ ++ Sbjct: 303 EPTDRGCDPQIVMESLFKLTNLESRIQLNMNVIGSNNVPRVMNILEILQEFLYHRQNIVT 362 Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILN 433 RRS++ + I R+EILKGL IAYLN+DEII IIR ED+PK +M+ RF LTE QV+AILN Sbjct: 363 RRSTYLLNKIKHRLEILKGLRIAYLNLDEIIKIIREEDEPKAIMMERFKLTEIQVEAILN 422 Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493 RLRSLRKLEE +I +E NL ++ ++ +LN+ K+ W + EI+ V+ F +T +G Sbjct: 423 TRLRSLRKLEEQEIINEHSNLQKQQAILEEILNNPKELWKIVKKEIKTVQTKFGLNTVIG 482 Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKI 553 RRT+F EV+ ++ A I KEPIT++ S GW+RSLK H+ DLS + +KEGD+ K Sbjct: 483 ARRTSFEEVTFTNQVVDITAFITKEPITIICSKMGWVRSLKGHNTDLSTIKYKEGDAEKF 542 Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613 L A+TTD+IL++S++G+ +TL A N+ G+G GE+I+LL+D+ +N DI VY Sbjct: 543 ILEAYTTDKILIVSSEGRFFTLLADNISKGKGTGESIKLLVDIGNN-DITNILVYKPDQL 601 Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIF 673 LL+ SS G F+V +E++A T+ GK + V + V GD +A +GE+RKLL+F Sbjct: 602 LLLASSVGKGFLVNSNEVMAQTKTGKQIMNVPDGHVCIACLPVNGDSIACIGESRKLLVF 661 Query: 674 SIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKR 733 +ID+IPEM +G+GV LQ +K+ + D+ F +GL W ++ G+ + E +++ +LGKR Sbjct: 662 NIDEIPEMKKGQGVTLQKFKNAKLLDIKIFNKEDGLGW-NNNGKV--KLEKNIVAFLGKR 718 Query: 734 GGVGSLVPKGFPRSGKFLS 752 G G L P GFP++ +F S Sbjct: 719 GSTGKLPPMGFPKNNRFSS 737 >gi|34580944|ref|ZP_00142424.1| topoisomerase IV subunit A [Rickettsia sibirica 246] gi|28262329|gb|EAA25833.1| topoisomerase IV subunit A [Rickettsia sibirica 246] Length = 738 Score = 771 bits (1991), Expect = 0.0, Method: Compositional matrix adjust. Identities = 374/739 (50%), Positives = 530/739 (71%), Gaps = 4/739 (0%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 E V+ + AL ERYLAYALSTI R++PD+RDG KPVHRR+++AM ++ L+ + +K Sbjct: 3 EAKVENIDFGNALSERYLAYALSTIMSRSLPDVRDGLKPVHRRLLYAMLQLRLEPNSGYK 62 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 K AR+VG+VIGK HPHGD +VYD+LVRLAQ F RYPLI GQGNFG+IDGD+AAA RYTE Sbjct: 63 KCARVVGDVIGKYHPHGDVAVYDTLVRLAQHFSLRYPLIDGQGNFGSIDGDNAAAMRYTE 122 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 +RMT + L+++ +D+D VDFR TY+ D EPV+ P+ FPNLLANG+ GIAVGMAT+IP Sbjct: 123 SRMTDICTLLMKDIDKDTVDFRPTYDGSDLEPVIMPASFPNLLANGSEGIAVGMATNIPP 182 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E+C+A + LI++P I ++ ++ GPDFPTGGII++ E I +Y GRG RVR Sbjct: 183 HNLHELCDALIHLINHPTAEINDIINFVKGPDFPTGGIIIDKAEVINAAYTTGRGSLRVR 242 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313 +RW EE+ G++ IVVTEIPYQVQKS+LIE+IA L+ K+IPL+ +IRDES + +R+V+ Sbjct: 243 SRWEKEELSYGTYQIVVTEIPYQVQKSKLIEQIAILLKDKKIPLVSNIRDESTDIIRLVI 302 Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373 P++R DP ++MES+F L+++E+R LNMNV+ VP+VM + IL+E+L HR+ ++ Sbjct: 303 EPRDRGCDPQIVMESLFKLTNLESRIQLNMNVIGSNNVPRVMNILEILQEFLYHRQNIVT 362 Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILN 433 RRS++ + I R+EILKGL IAYLN+DEII IIR ED+PK +M+ RF LTE QV+AILN Sbjct: 363 RRSTYLLNKIKHRLEILKGLRIAYLNLDEIIKIIREEDEPKAIMMERFKLTEIQVEAILN 422 Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493 RLR LRKLEE +I +E NL ++ ++ +LN+ K+ W + EI+ V+ F +T +G Sbjct: 423 TRLRLLRKLEEQEIINEHSNLQKQQAILEEILNNPKELWKIVKKEIKTVQTKFGLNTVIG 482 Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKI 553 RRT+F EV+ ++ A I KEPIT++ S GW+RSLK H+ DLS + +KEGD+ K Sbjct: 483 ARRTSFEEVTLTNQVVDITAFIIKEPITIICSKMGWVRSLKGHNTDLSTIKYKEGDAEKF 542 Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613 L A+TTD+IL++S++G+ +TL A N+ G+G GE+I+LL+D+ +N DI VY Sbjct: 543 ILEAYTTDKILIVSSEGRFFTLLADNISKGKGTGESIKLLVDIGNN-DITNILVYKPDQL 601 Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIF 673 LL+ SS G F+V +E++A T+ GK + V + V GD +A +GE+RKLL+F Sbjct: 602 LLLASSVGKGFLVNSNEVMAQTKTGKQIMNVPDGHVCIACLPVNGDSIACIGESRKLLVF 661 Query: 674 SIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKR 733 +ID+IPEM +G+GV LQ +K+ + D+ F +GL W ++ G+ + E +++ +LGKR Sbjct: 662 NIDEIPEMKKGQGVTLQKFKNAKLLDIKIFNKEDGLGW-NNNGKV--KLEKNIVAFLGKR 718 Query: 734 GGVGSLVPKGFPRSGKFLS 752 G G L P GFP++ +F S Sbjct: 719 GSTGKLPPMGFPKNNRFSS 737 >gi|254475270|ref|ZP_05088656.1| DNA topoisomerase IV, A subunit [Ruegeria sp. R11] gi|214029513|gb|EEB70348.1| DNA topoisomerase IV, A subunit [Ruegeria sp. R11] Length = 782 Score = 771 bits (1991), Expect = 0.0, Method: Compositional matrix adjust. Identities = 387/763 (50%), Positives = 518/763 (67%), Gaps = 38/763 (4%) Query: 22 LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81 LR A+ ERYL YALSTI RA+PD RDG KPVHRRI++AM+ + L F KSA+I G+ Sbjct: 23 LRRAIGERYLTYALSTIMHRALPDARDGLKPVHRRILYAMNRLRLSSSGGFLKSAKISGD 82 Query: 82 VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE 141 +G HPHGD ++YD++ RLAQ F RYPL+ GQGNFGNIDGD+ AA RYTEARMT +AE Sbjct: 83 TMGDFHPHGDAAIYDAMARLAQDFNVRYPLVDGQGNFGNIDGDNPAASRYTEARMTFIAE 142 Query: 142 LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICE 201 +L+G++E+AVDFRD Y+ +EP V P+ FPN+LANG SGIAVGMAT+IP HN+ E+ + Sbjct: 143 AMLEGLNENAVDFRDNYDGRLTEPAVLPATFPNILANGASGIAVGMATNIPPHNIAELID 202 Query: 202 AALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEV 261 A + LI P+ + LL Y+ GPDFPTGGIIVE +E+I ++Y GRG FR+R + VE++ Sbjct: 203 ACIHLIRTPDARDDTLLNYVPGPDFPTGGIIVEPKENIAKAYSTGRGSFRLRCQHEVEDL 262 Query: 262 GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLD 321 GRG W IVVTEIPYQVQKS+LIEKIAELI K++P+L D+RDESA+D+RI+L PK++++D Sbjct: 263 GRGQWQIVVTEIPYQVQKSKLIEKIAELIQTKKVPILADVRDESADDIRIILEPKSKNVD 322 Query: 322 PDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQ 381 P++LM +F SD+E RF LNMNVL G P+V + +L+ +L HRR+VL RRS RM Sbjct: 323 PEVLMNMMFRNSDLEVRFSLNMNVLIDGVTPKVCSMKEVLRAFLDHRRDVLQRRSQHRMD 382 Query: 382 AIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR--------------------- 420 ID R+E+L+G +IA+LN+D +I IIR +D PK ++ Sbjct: 383 KIDHRLEVLEGFIIAFLNLDRVIDIIRYDDDPKAALMREDWDRDHPRAYSEAEYVSPGEG 442 Query: 421 -FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479 LTE Q +AILN+RLRSLR+LEE ++ E D L E+ + LL S + QW++I ++ Sbjct: 443 VGELTEVQAEAILNMRLRSLRRLEEIELTRERDALREERAGLVELLGSEELQWSRITEQL 502 Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539 ++ K+ F K G RRT F E + L +AMI++EPITVV S GWIR++ H +D Sbjct: 503 KDTKKQFGKDYAGGARRTRFAEAGEVEDVPL-EAMIDREPITVVCSQMGWIRAMTGH-ID 560 Query: 540 LS-ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNH 598 L+ L FK+GD + HA TTDR+L+ ++G+ YT+ A NL GRG GE ++L++DL + Sbjct: 561 LNRELKFKDGDGPRFIFHAETTDRLLVFGSNGRFYTVSAANLPGGRGMGEPLRLMVDLPN 620 Query: 599 NQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG 658 +IV +++ +LLV S GN FI E +I+A TR GK L V ++K K+ + V G Sbjct: 621 EVEIVDILIHNPDGRLLVASDAGNGFICAEKDIVAQTRSGKQVLNVKDDDKAKICIPVEG 680 Query: 659 DHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYK-----------DGGISDVICFKICE 707 DHVAVV EN K L+FS++++PE+SRGKGVRLQ Y DGG+SD+ F E Sbjct: 681 DHVAVVSENGKFLVFSVEEMPELSRGKGVRLQKYNMARGKQGALELDGGLSDITTFNWDE 740 Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750 GL W G++ R E DL WLGKR VG P GFPR+ KF Sbjct: 741 GLKWEMGGGKT--RHEGDLTEWLGKRASVGKRPPHGFPRNYKF 781 >gi|294011464|ref|YP_003544924.1| topoisomerase IV subunit A [Sphingobium japonicum UT26S] gi|292674794|dbj|BAI96312.1| topoisomerase IV subunit A [Sphingobium japonicum UT26S] Length = 762 Score = 769 bits (1987), Expect = 0.0, Method: Compositional matrix adjust. Identities = 379/745 (50%), Positives = 516/745 (69%), Gaps = 20/745 (2%) Query: 25 ALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA------------- 71 AL +RYL YALSTI R++PDLRDG KPVHRR++ AM + ++ G A Sbjct: 19 ALSQRYLVYALSTITARSLPDLRDGLKPVHRRLLWAMRLLKMEPGGASPDVLVANPARNT 78 Query: 72 --FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129 +KK AR+VG+VIGK HPHGD SVYD++VRLAQ F R PL+ GQGNFGNIDGD+AAA Sbjct: 79 TSYKKCARVVGDVIGKYHPHGDASVYDAMVRLAQDFSLRTPLVDGQGNFGNIDGDNAAAM 138 Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189 RYTEAR+TQ A ++ G+DE V+FR TYN ED EP VFP FPNLLANG SGIAVGMAT Sbjct: 139 RYTEARLTQAAADLMAGLDEGTVEFRPTYNGEDQEPEVFPGLFPNLLANGASGIAVGMAT 198 Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249 SIP HNV E+ +AA LIDNP+ +L+ + GPDFPTGG++V+S I E+Y GRG Sbjct: 199 SIPPHNVAELIDAASLLIDNPDAEHAELMRIVRGPDFPTGGVLVDSPSIISEAYATGRGS 258 Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309 FR RARW E+ GRG+W VVT+IP+QVQKS+LIE+IA LI +++P+L D+RDES E + Sbjct: 259 FRTRARWHKEDGGRGTWVAVVTQIPFQVQKSKLIEQIAALINDRKLPILADVRDESDELI 318 Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369 RIV+ P+ R++DPD+LM+S+F L+D+E RFPLN+NVL R P+V+ L +L EWL H+ Sbjct: 319 RIVIEPRARTVDPDVLMDSLFRLTDLENRFPLNLNVLDATRTPRVLGLKPVLIEWLKHQI 378 Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429 +VL +R+ R+ I R+E+L G +IAYLN+D +I IIR ED+PK VM++ F L + Q + Sbjct: 379 DVLVKRAQHRLDKIAARLELLDGYIIAYLNLDRVIEIIRTEDEPKEVMMAEFGLNDRQAE 438 Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489 AILN+RLRSLRKLEE +++ E LL E++ + L+ S +Q ++ ++ ++++ +S Sbjct: 439 AILNMRLRSLRKLEEMELRREHSELLKERDDLIKLVESPARQRTRLKKDLADLRKRYSPD 498 Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA--LHFKE 547 +D GRRRT E + A + L +AMIEKEPITV++S RGWIR++ H SA L FKE Sbjct: 499 SDFGRRRTLVEEAAPAREIPL-EAMIEKEPITVILSERGWIRAMSGHRDLASADTLKFKE 557 Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV 607 GD IA HA TTD++LL + G+ +TL A L GRG G+ ++ L+D++ IV Sbjct: 558 GDGPMIAFHAQTTDKLLLATETGRIFTLGADKLPGGRGFGDPVRSLVDMDGTGQIVALMP 617 Query: 608 YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT--GDHVAVVG 665 + +LL+ SS G F+ +++IA TRKGK + V + K+ +V + D VAVVG Sbjct: 618 ARTGGELLLASSDGRGFVAAVADVIAETRKGKQVVNVRTGAKLSVVHPIAPDADSVAVVG 677 Query: 666 ENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSEND 725 ENRKLL+FS+ ++P M+RG+GV++Q Y+DGG+SD I F++ +GL+W G R+E D Sbjct: 678 ENRKLLVFSLIEMPRMARGQGVQMQRYRDGGLSDAIAFRLSDGLSWAMGGGTGRVRTEAD 737 Query: 726 LLGWLGKRGGVGSLVPKGFPRSGKF 750 + W RG G + P GFPR +F Sbjct: 738 MTPWRVARGAAGRMPPTGFPRDNRF 762 >gi|6502510|gb|AAF14339.1|U86302_2 ParC [Caulobacter crescentus CB15] gi|2749945|gb|AAC38043.1| DNA topoisomerase IV ParC subunit [Caulobacter crescentus CB15] Length = 759 Score = 768 bits (1984), Expect = 0.0, Method: Compositional matrix adjust. Identities = 381/734 (51%), Positives = 514/734 (70%), Gaps = 11/734 (1%) Query: 25 ALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIG 84 AL RYLAYALSTI RA+PD+RDG KPVHRR+++AMS M L+ AA +K A++VGEV+G Sbjct: 26 ALSRRYLAYALSTIGSRALPDVRDGLKPVHRRVLYAMSNMRLNPDAAARKCAKVVGEVMG 85 Query: 85 KLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELIL 144 HPHGD S+YD+LVRLAQ F QR PL+ GQGNFGNIDGDSAAA RYTE +MT+ A L+L Sbjct: 86 NFHPHGDASIYDALVRLAQEFSQRIPLVEGQGNFGNIDGDSAAAMRYTECKMTEAAMLLL 145 Query: 145 QGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAAL 204 G+DEDAVDFR TY+ +D EPVV PS FPNLLANG+SGIAVGMATSIP HN E+ +A Sbjct: 146 DGIDEDAVDFRPTYDGQDEEPVVLPSGFPNLLANGSSGIAVGMATSIPPHNAAELIDACQ 205 Query: 205 ALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRG 264 L+ NP+ + LLE + GPDFPTGG+IVESR S++E+Y GRGG R+RA+W E+ GRG Sbjct: 206 LLLANPDATTADLLEKVPGPDFPTGGVIVESRASLLETYETGRGGVRMRAKWEKEDTGRG 265 Query: 265 SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDL 324 ++ IVVTEIPYQV+KS L+E++A+LI +K+ LL D+RDESAED+R+VL PK+++++P++ Sbjct: 266 TYQIVVTEIPYQVKKSDLVEQLADLIDSKKAALLGDVRDESAEDIRLVLEPKSKNVEPEV 325 Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384 LMES+F LS +E+RFP+N+NVL P VM + L +LAHRREVL RR+ R+ I+ Sbjct: 326 LMESLFKLSALESRFPVNINVLDARGTPGVMGIKQALMAFLAHRREVLTRRARHRLAKIE 385 Query: 385 RRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEE 444 R+ IL GLLIAYLN+DE+I I+R EDKPK ++ F LT+ Q DAILN RLR L KLEE Sbjct: 386 ARLHILDGLLIAYLNLDEVIRIVRYEDKPKEKLIETFGLTDIQADAILNTRLRQLAKLEE 445 Query: 445 YQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV-------KEIFSKSTDLG-RRR 496 +I+ E L+ E++ I ++L S +QW + + EV K K G R Sbjct: 446 MEIRREHAELVEERDGILAMLASEAKQWKLVGVGLSEVRAALLKIKHPLDKPAPTGVTGR 505 Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALH 556 + F E + D +AMI +EPIT+++S RGWIR+ K D S L FKEGD L + Sbjct: 506 SVFGEAPQVDADAAIEAMIVREPITIILSERGWIRAAKGKIDDPSELKFKEGDKLGFLVP 565 Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLV 616 A TTD++L+ S+DG+ +TL L S RGHGE ++++I+L+ I+ F + + K ++ Sbjct: 566 AETTDKLLIFSSDGRFFTLGCDKLPSARGHGEPVRMMIELDDKVKIIDVFPFKAGRKRIL 625 Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSID 676 S G F++ E E +AN + GK L V + E ++ GD +AV+G+N K+LIF ++ Sbjct: 626 ASKGGYGFLMPEEEALANRKAGKQVLNVGN-EGAAFCLEAVGDQLAVIGDNGKILIFPLE 684 Query: 677 QIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGV 736 ++PEM RGKGV+LQ+Y++GG+ D + F G WID+AGR + +E W+G+R G Sbjct: 685 ELPEMPRGKGVKLQAYREGGLRDGLSFNAETGAYWIDTAGRRRDWAE--WKEWVGRRAGA 742 Query: 737 GSLVPKGFPRSGKF 750 G LVPKGF + +F Sbjct: 743 GKLVPKGFATNKRF 756 >gi|16125813|ref|NP_420377.1| DNA topoisomerase IV subunit A [Caulobacter crescentus CB15] gi|221234574|ref|YP_002517010.1| DNA topoisomerase IV subunit A [Caulobacter crescentus NA1000] gi|13638360|sp|O54478|PARC_CAUCR RecName: Full=DNA topoisomerase 4 subunit A; AltName: Full=Topoisomerase IV subunit A gi|13422955|gb|AAK23545.1| topoisomerase IV, subunit A [Caulobacter crescentus CB15] gi|220963746|gb|ACL95102.1| topoisomerase IV subunit A [Caulobacter crescentus NA1000] Length = 759 Score = 768 bits (1983), Expect = 0.0, Method: Compositional matrix adjust. Identities = 381/734 (51%), Positives = 514/734 (70%), Gaps = 11/734 (1%) Query: 25 ALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIG 84 AL RYLAYALSTI RA+PD+RDG KPVHRR+++AMS M L+ AA +K A++VGEV+G Sbjct: 26 ALSRRYLAYALSTIGSRALPDVRDGLKPVHRRVLYAMSNMRLNPDAAARKCAKVVGEVMG 85 Query: 85 KLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELIL 144 HPHGD S+YD+LVRLAQ F QR PL+ GQGNFGNIDGDSAAA RYTE +MT+ A L+L Sbjct: 86 NFHPHGDASIYDALVRLAQEFSQRIPLVEGQGNFGNIDGDSAAAMRYTECKMTEAAMLLL 145 Query: 145 QGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAAL 204 G+DEDAVDFR TY+ +D EPVV PS FPNLLANG+SGIAVGMATSIP HN E+ +A Sbjct: 146 DGIDEDAVDFRPTYDGQDEEPVVLPSGFPNLLANGSSGIAVGMATSIPPHNAAELIDACQ 205 Query: 205 ALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRG 264 L+ NP+ + LLE + GPDFPTGG+IVESR S++E+Y GRGG R+RA+W E+ GRG Sbjct: 206 LLLANPDATTADLLEKVPGPDFPTGGVIVESRASLLETYETGRGGVRMRAKWEKEDTGRG 265 Query: 265 SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDL 324 ++ IVVTEIPYQV+KS L+E++A+LI +K+ LL D+RDESAED+R+VL PK+++++P++ Sbjct: 266 TYQIVVTEIPYQVKKSDLVEQLADLIDSKKAALLGDVRDESAEDIRLVLEPKSKNVEPEV 325 Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384 LMES+F LS +E+RFP+N+NVL P VM + L +LAHRREVL RR+ R+ I+ Sbjct: 326 LMESLFKLSALESRFPVNINVLDARGTPGVMGIKQALMAFLAHRREVLTRRARHRLAKIE 385 Query: 385 RRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEE 444 R+ IL GLLIAYLN+DE+I I+R EDKPK ++ F LT+ Q DAILN RLR L KLEE Sbjct: 386 ARLHILDGLLIAYLNLDEVIRIVRYEDKPKEKLIETFGLTDIQADAILNTRLRQLAKLEE 445 Query: 445 YQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV-------KEIFSKSTDLG-RRR 496 +I+ E L+ E++ I ++L S +QW + + EV K K G R Sbjct: 446 MEIRREHAELVEERDGILAMLASEAKQWKLVGVGLSEVRAALLKIKHPLDKPRPTGVTGR 505 Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALH 556 + F E + D +AMI +EPIT+++S RGWIR+ K D S L FKEGD L + Sbjct: 506 SVFGEAPQVDADAAIEAMIVREPITIILSERGWIRAAKGKIDDPSELKFKEGDKLGFLVP 565 Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLV 616 A TTD++L+ S+DG+ +TL L S RGHGE ++++I+L+ I+ F + + K ++ Sbjct: 566 AETTDKLLIFSSDGRFFTLGCDKLPSARGHGEPVRMMIELDDKVKIIDVFPFKAGRKRIL 625 Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSID 676 S G F++ E E +AN + GK L V + E ++ GD +AV+G+N K+LIF ++ Sbjct: 626 ASKGGYGFLMPEEEALANRKAGKQVLNVGN-EGAAFCLEAVGDQLAVIGDNGKILIFPLE 684 Query: 677 QIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGV 736 ++PEM RGKGV+LQ+Y++GG+ D + F G WID+AGR + +E W+G+R G Sbjct: 685 ELPEMPRGKGVKLQAYREGGLRDGLSFNAETGAYWIDTAGRRRDWAE--WKEWVGRRAGA 742 Query: 737 GSLVPKGFPRSGKF 750 G LVPKGF + +F Sbjct: 743 GKLVPKGFATNKRF 756 >gi|157803253|ref|YP_001491802.1| DNA topoisomerase IV subunit A [Rickettsia canadensis str. McKiel] gi|157784516|gb|ABV73017.1| DNA topoisomerase IV subunit A [Rickettsia canadensis str. McKiel] Length = 738 Score = 766 bits (1978), Expect = 0.0, Method: Compositional matrix adjust. Identities = 372/729 (51%), Positives = 527/729 (72%), Gaps = 4/729 (0%) Query: 25 ALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIG 84 AL ERYLAYALSTI R++PD+RDG KPVHRR+++AM ++ L+ + +KK AR+VG+VIG Sbjct: 14 ALSERYLAYALSTIMSRSLPDVRDGLKPVHRRLLYAMLQLRLEPNSGYKKCARVVGDVIG 73 Query: 85 KLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELIL 144 K HPHGD +VYD+LVRLAQ F RYPLI GQGNFG+IDGD+AAA RYTE+RMT++ L++ Sbjct: 74 KYHPHGDGAVYDTLVRLAQYFSLRYPLIDGQGNFGSIDGDNAAAMRYTESRMTEICMLLM 133 Query: 145 QGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAAL 204 +D+D VDFR TY++ D EPV+ P+ FPNLLANG+ GIAVGMAT+IP HN+ E+C+A + Sbjct: 134 DDIDKDTVDFRPTYDDSDLEPVIMPASFPNLLANGSEGIAVGMATNIPPHNLHELCDALI 193 Query: 205 ALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRG 264 LID+P+ + ++ +I GPDFPTGGII++ E I +Y GRG RVR+RW EE+ G Sbjct: 194 HLIDHPKAEVNDIMNFIKGPDFPTGGIIIDKAEVINAAYSTGRGSLRVRSRWKKEELSYG 253 Query: 265 SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDL 324 ++ IVVTEIPYQVQKS+LIE+IA L+ K+IPL+ +IRDES + +R+V+ P++R+ DP + Sbjct: 254 TYQIVVTEIPYQVQKSKLIEQIAILLKDKKIPLVSNIRDESTDIIRLVIEPRDRNCDPQV 313 Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384 +MES+F L+++E+R LNMNV+ VP+VM + IL+E+L HR+ ++ RRS++ + I Sbjct: 314 VMESLFKLTNLESRIQLNMNVIGSNNVPRVMNILEILQEFLDHRQSIVTRRSTYLLNKIQ 373 Query: 385 RRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEE 444 R+EIL+GL IAYLN DEII IIR ED+PK +M++ F LTE QV+AILN RLRSL +LEE Sbjct: 374 HRLEILEGLRIAYLNFDEIIKIIREEDEPKAIMINWFKLTEIQVEAILNTRLRSLHRLEE 433 Query: 445 YQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSR 504 +I +E NL ++ ++ +LN+ K+ W + EI+ V+ F +T +G RRT F EV+ Sbjct: 434 QKIINEHSNLKKQQVILEEILNNPKELWKVVKKEIKTVQTKFGLNTVIGARRTYFEEVTL 493 Query: 505 ADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRIL 564 ++ A I KEPIT++ S GW+RS K H+ DLS + +KEGD+ K L A+TTD++L Sbjct: 494 TNQVVDITAFITKEPITIICSKMGWVRSFKGHNNDLSNIKYKEGDTEKFILKAYTTDKLL 553 Query: 565 LLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAF 624 ++S++G+ +TL A N+ G+G E+I+LL+D+ +N DI VY LL+ SS G F Sbjct: 554 IVSSEGRFFTLLADNISKGKGTEESIKLLVDIGNN-DITNILVYKPDQLLLLASSIGKGF 612 Query: 625 IVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRG 684 +V +E+IA T+ GK + V + + GD VA +GE+RKLL+F+ID+IPEM +G Sbjct: 613 LVNSNEVIAQTKTGKQIMNVPNGHICITCLPANGDSVACIGESRKLLVFNIDEIPEMKKG 672 Query: 685 KGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGF 744 +GV LQ +KD + DV F +GL W ++ G+ + E +++ +LGKRGG G L P GF Sbjct: 673 QGVTLQKFKDAKLLDVKIFNKEDGLGW-NNNGKV--KLEKNIITFLGKRGGAGKLPPMGF 729 Query: 745 PRSGKFLSS 753 P++ +F SS Sbjct: 730 PKNNRFSSS 738 >gi|326388525|ref|ZP_08210119.1| DNA topoisomerase IV subunit A [Novosphingobium nitrogenifigens DSM 19370] gi|326206990|gb|EGD57813.1| DNA topoisomerase IV subunit A [Novosphingobium nitrogenifigens DSM 19370] Length = 770 Score = 766 bits (1978), Expect = 0.0, Method: Compositional matrix adjust. Identities = 377/747 (50%), Positives = 514/747 (68%), Gaps = 23/747 (3%) Query: 25 ALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIG 84 AL ERYL YALSTI R++PDLRDG KPVHRR++ AM ++ LD AFKKSAR+VG+VIG Sbjct: 25 ALSERYLVYALSTITARSLPDLRDGLKPVHRRLLWAMRQLRLDPTGAFKKSARVVGDVIG 84 Query: 85 KLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELIL 144 K HPHGD SVYD++VRLAQ F RYPL+ GQGNFGNIDGD+AAAYRYTEAR+T A ++ Sbjct: 85 KYHPHGDASVYDAMVRLAQDFALRYPLVEGQGNFGNIDGDNAAAYRYTEARLTATAARLM 144 Query: 145 QGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAAL 204 G+DE VDF TYN E+ EP +FP FPNLLANG++GIAVGMATSIPSHNV EI +A L Sbjct: 145 AGLDEGTVDFHPTYNGEEHEPEIFPGLFPNLLANGSTGIAVGMATSIPSHNVAEIVDATL 204 Query: 205 ALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC------- 257 LIDNP + +L+ GPDFPTGG++V+S +I +Y +G+G RVR R+ Sbjct: 205 MLIDNPYVEHAQLMTVFHGPDFPTGGVVVDSPAAISSAYEVGKGAIRVRGRFSTGRDEAG 264 Query: 258 ------VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311 +E++G G W +V++EIPY V K +LIE+IA LI K++P+LED+RDES E +RI Sbjct: 265 EWEDSGIEKLGSGQWQLVISEIPYMVAKGKLIEQIAALIADKKLPILEDVRDESDEHIRI 324 Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371 VL PK+R++DPDLL ES++ L+++E+RF LN+N+L R P V+ L IL+EW+ + ++ Sbjct: 325 VLVPKSRNVDPDLLKESLYRLTELESRFSLNLNMLDARRTPGVLGLKQILQEWVIAQIDI 384 Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431 L RRS R+ I R+E+L G +IAYLN+D II IIR ED+PKPVM++ F LT+ Q +AI Sbjct: 385 LVRRSQHRLDKIAARLELLDGYIIAYLNLDRIIEIIRTEDEPKPVMMAEFGLTDRQAEAI 444 Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491 LN+RLRSLRKLEE +++ E D LLAE++++ LL + +Q ++ ++ +++ + T Sbjct: 445 LNMRLRSLRKLEEMELRRERDALLAEQDELTKLLENPARQRTRLKRDLAALRKEYGPDTA 504 Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA------LHF 545 LGRRRTT E + + ++ AMIEKEP+TV++S RGWIR+ K H V L F Sbjct: 505 LGRRRTTIAEAAPTREFSM-DAMIEKEPVTVILSQRGWIRAAKGH-VPLGTDGKGEDFKF 562 Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605 KEGD A HA TTD++L+ +G+ YTL A L RG GE I+ ++D++ N +V Sbjct: 563 KEGDGPAFAFHAQTTDKLLIAIDNGRFYTLGADKLPGARGFGEPIRTVLDIDPNGQVVAI 622 Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--DHVAV 663 F + +LL+ ++ G F+ E E++A TRKG+ + + +V ++ DHVAV Sbjct: 623 FPWRHGGQLLLAANNGRGFVAEMDELLAETRKGRGVVSTKPGVHLAVVREIAPEHDHVAV 682 Query: 664 VGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSE 723 VGENRKL+IF++ ++P + +G+GV LQ YKDGG+SD + K+ +GL+W R+E Sbjct: 683 VGENRKLVIFALSEMPVLGKGQGVTLQRYKDGGLSDAVTLKLEDGLSWAMGGETGRTRTE 742 Query: 724 NDLLGWLGKRGGVGSLVPKGFPRSGKF 750 DLL W RG G L P GFPR KF Sbjct: 743 KDLLPWKVARGAAGRLPPTGFPRDNKF 769 >gi|258543011|ref|YP_003188444.1| DNA topoisomerase IV subunit A [Acetobacter pasteurianus IFO 3283-01] gi|256634089|dbj|BAI00065.1| DNA topoisomerase IV subunit A [Acetobacter pasteurianus IFO 3283-01] gi|256637149|dbj|BAI03118.1| DNA topoisomerase IV subunit A [Acetobacter pasteurianus IFO 3283-03] gi|256640201|dbj|BAI06163.1| DNA topoisomerase IV subunit A [Acetobacter pasteurianus IFO 3283-07] gi|256643258|dbj|BAI09213.1| DNA topoisomerase IV subunit A [Acetobacter pasteurianus IFO 3283-22] gi|256646313|dbj|BAI12261.1| DNA topoisomerase IV subunit A [Acetobacter pasteurianus IFO 3283-26] gi|256649366|dbj|BAI15307.1| DNA topoisomerase IV subunit A [Acetobacter pasteurianus IFO 3283-32] gi|256652352|dbj|BAI18286.1| DNA topoisomerase IV subunit A [Acetobacter pasteurianus IFO 3283-01-42C] gi|256655410|dbj|BAI21337.1| DNA topoisomerase IV subunit A [Acetobacter pasteurianus IFO 3283-12] Length = 742 Score = 765 bits (1976), Expect = 0.0, Method: Compositional matrix adjust. Identities = 372/727 (51%), Positives = 518/727 (71%), Gaps = 7/727 (0%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 +++ L AL ERYLAYALSTI R++PD+RDG KPVHRR+++AM ++ LD + FKK Sbjct: 15 HIEETKLAEALSERYLAYALSTIMSRSLPDVRDGLKPVHRRLVYAMHQLRLDPASGFKKC 74 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 AR+VG+VIGK HPHGD SVY++LVRLAQ F RYPL+ GQGNFG++DGD+ AA RYTEAR Sbjct: 75 ARVVGDVIGKFHPHGDASVYEALVRLAQDFAARYPLVEGQGNFGSVDGDNPAAMRYTEAR 134 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 +T+VA +L G+++DAVDFR TY+ E+ EPVV PS FPNLLANG +GIAVGMATSIP HN Sbjct: 135 LTEVAVALLDGIEDDAVDFRPTYDGEEQEPVVLPSAFPNLLANGAAGIAVGMATSIPPHN 194 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 E+C AA L+ P + ++LLE + GPDFPTGG+IVE ++I+++Y GRG FR+RAR Sbjct: 195 AAEVCAAAALLVRKPSATTQELLELMPGPDFPTGGLIVEDSDAILQAYETGRGSFRMRAR 254 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315 W VE+ G+W IVVT+IPYQVQKSRLIE+IA+L+ K++PLL DIRDES +++R+VL P Sbjct: 255 WEVEQGRFGTWHIVVTQIPYQVQKSRLIEQIADLLDQKKLPLLGDIRDESTDEIRLVLEP 314 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 K R ++P++LME++F + +E+RF LNMNVL R P VM L +++ WL HR EVL RR Sbjct: 315 KTRGIEPEVLMETLFRATPLESRFGLNMNVLGADRSPGVMGLKQVIQAWLDHRHEVLERR 374 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435 S R+ A++RR+EIL G L YLN+D++I IIR ED K +++ F LT+ Q +++LN+R Sbjct: 375 SRHRLTAVERRLEILSGFLAVYLNLDKVIRIIREEDDAKASLIATFKLTDLQAESVLNMR 434 Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495 LRSLR+LEE +I+ E D L AEK + +LL+S KQ+W I E+ + + F K LG R Sbjct: 435 LRSLRRLEEMEIRKEHDALSAEKAALMALLDSEKQRWKTIERELTGMIKAFGKGR-LGER 493 Query: 496 RTTFCEVSR-ADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIA 554 R+T + D + +++ +E+EP+T+++S +GW+R++K H+VDL FKEGD+LK+A Sbjct: 494 RSTILSAPKPVDISVVEE--VEREPLTMILSQKGWVRAVKGHNVDLENQKFKEGDALKLA 551 Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614 + TTDR+ +TDG+AYT+ +L GRG G+ I+LLIDL++++D++ F + + Sbjct: 552 IPCQTTDRLCFFATDGRAYTVKGADLPRGRGDGQPIRLLIDLSNDEDLLAVFPIEDGKRR 611 Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFS 674 LV SS G +VEE ++A R G+ L + E ++ V GDHVAVVG+NR+ LIF Sbjct: 612 LVASSAGRGMLVEEEALVAEKRSGRQVLNLKEGEFARVCVPAEGDHVAVVGDNRRFLIFP 671 Query: 675 IDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRG 734 ++Q+P M+RG GV LQ Y DGG+ + F +GL W G + R DL W+ +R Sbjct: 672 LEQLPVMARGLGVALQKYSDGGLRQAVVFTAADGLHW---PGTARIRQFADLQDWVSRRA 728 Query: 735 GVGSLVP 741 VG + P Sbjct: 729 AVGKVAP 735 >gi|85373274|ref|YP_457336.1| DNA topoisomerase IV subunit A [Erythrobacter litoralis HTCC2594] gi|84786357|gb|ABC62539.1| DNA topoisomeraseIV subunitA [Erythrobacter litoralis HTCC2594] Length = 769 Score = 765 bits (1975), Expect = 0.0, Method: Compositional matrix adjust. Identities = 374/748 (50%), Positives = 518/748 (69%), Gaps = 24/748 (3%) Query: 25 ALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIG 84 ALEERYL YALSTI R++PDLRDG KPVHRR++ M ++ LD FKKSAR+VGEVIG Sbjct: 24 ALEERYLVYALSTITARSLPDLRDGLKPVHRRLLWTMRQLKLDPTNTFKKSARVVGEVIG 83 Query: 85 KLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELIL 144 K HPHGD + YD++VRLAQ F RYPL+ GQGNFGNIDGD+AAAYRYTEAR+T+ A ++ Sbjct: 84 KYHPHGDTAAYDAMVRLAQDFALRYPLVEGQGNFGNIDGDNAAAYRYTEARLTRTAMALM 143 Query: 145 QGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAAL 204 G+DE VDF TYN E+ EP + P FPNLLANG SGIAVGMAT+IPSHNV EI +A L Sbjct: 144 AGLDEGTVDFIPTYNGEEEEPELMPGLFPNLLANGASGIAVGMATNIPSHNVHEIIDATL 203 Query: 205 ALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW-------- 256 LIDNP + +L+E GPD PTGG+IV+S E I +Y GRG FR+R R+ Sbjct: 204 ELIDNPHVEHARLMELFQGPDLPTGGLIVDSPEVISNAYETGRGSFRIRGRFHAAEAEKQ 263 Query: 257 -----CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311 +E +G G W +V++EIPYQVQK +LIE+IA+ I K++P+L+D+RDES E +RI Sbjct: 264 ADQGAGIERLGGGQWQLVISEIPYQVQKGKLIEQIAQAIADKKLPILDDVRDESDEQIRI 323 Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371 VL P++R++DP+LL ESI+ L+DMETRF LN+NVL R P VM L +L+ W+ + E+ Sbjct: 324 VLVPRSRNIDPELLKESIYKLTDMETRFGLNLNVLDATRTPMVMGLKELLENWVRSQIEI 383 Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431 L RR+ R+ I RR+E+++G +IA+LN+D +I IIR ED+PK VM++ FSLT+ Q +AI Sbjct: 384 LQRRTQHRLDQIARRLELVEGYIIAFLNLDRVIEIIRYEDEPKQVMMAEFSLTDRQAEAI 443 Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491 LN+RLRSLRKLEE ++K E +LLAE+E+++ LL S +Q ++ +++ +++ + T+ Sbjct: 444 LNMRLRSLRKLEEMELKQEKTDLLAEQEELEKLLGSPARQRTRLKRDLKALQKEYGLDTE 503 Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA-------LH 544 LG RRTT E + ++ AMIEKEP+TVV+S +GW+R+ K H VDL Sbjct: 504 LGARRTTIAEAEPTVEFSM-DAMIEKEPVTVVLSQKGWVRAAKGH-VDLEGSKDGCGDFK 561 Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVT 604 +KEGD A+H TTD++LL + +G+ +TL A L RG GE ++ +D++ IV Sbjct: 562 YKEGDGPAFAVHCQTTDKVLLAADNGRFFTLGADKLPGARGFGEPVRNTLDIDAEAQIVA 621 Query: 605 AFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT--GDHVA 662 V + +LL+ + G F E E++A TRKGK + + + K+++V + DHVA Sbjct: 622 MLVSNPRGRLLLAADTGKGFAAEMGELVAETRKGKQVVNLKGDAKLRVVRPIADCDDHVA 681 Query: 663 VVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRS 722 VVGENRKL++F+++++P ++RG+GV+LQ Y+DGG+SD F + +GL+W R+ Sbjct: 682 VVGENRKLVVFNLEELPVLARGQGVQLQRYRDGGLSDAKTFVLDQGLSWQMGGKGDRTRT 741 Query: 723 ENDLLGWLGKRGGVGSLVPKGFPRSGKF 750 E D+ W RGG G L P+GFPR +F Sbjct: 742 ETDIWQWKVARGGAGRLPPQGFPRDNRF 769 >gi|329850741|ref|ZP_08265586.1| DNA topoisomerase IV, A subunit [Asticcacaulis biprosthecum C19] gi|328841056|gb|EGF90627.1| DNA topoisomerase IV, A subunit [Asticcacaulis biprosthecum C19] Length = 733 Score = 764 bits (1972), Expect = 0.0, Method: Compositional matrix adjust. Identities = 369/720 (51%), Positives = 509/720 (70%), Gaps = 8/720 (1%) Query: 25 ALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIG 84 AL +RYLAYALSTI RA+PD+RDG KPVHRR+++AMS M L+ AA +K A++VGEV+G Sbjct: 17 ALSKRYLAYALSTIMHRALPDVRDGLKPVHRRVLYAMSNMRLNPEAAARKCAKVVGEVMG 76 Query: 85 KLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELIL 144 HPHGDQ++YD+LVR+AQ F QRY L+ GQGNFGNIDGD+AAA RYTE R+T A +IL Sbjct: 77 NFHPHGDQAIYDALVRMAQNFAQRYELVQGQGNFGNIDGDNAAAMRYTECRLTLAAMMIL 136 Query: 145 QGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAAL 204 G++EDAVDFR TY+++D+EPVV P FPNLLANG GIAVGMATS+P HNV E+ +A Sbjct: 137 DGINEDAVDFRPTYDDQDTEPVVLPGGFPNLLANGAIGIAVGMATSVPPHNVVELVDACR 196 Query: 205 ALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRG 264 L+ N + +L+E+I GPDFPTGG+ VESR+SI E+Y GRG RVRAR+ VE+ GRG Sbjct: 197 KLLQNHAATTAELMEFIPGPDFPTGGVCVESRKSIQEAYETGRGSVRVRARYEVEDAGRG 256 Query: 265 SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDL 324 W I+V EIPYQVQKSRLIE++A+LI AK+ PLL D+RDES E++R+VL PK+R+++P++ Sbjct: 257 QWRIIVREIPYQVQKSRLIEQLADLIEAKKAPLLGDVRDESDENIRLVLEPKSRNIEPEV 316 Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384 LMES+F +SD+ETRFP+NMNVL P+VM L L WL HRR VL R S++R++ I+ Sbjct: 317 LMESLFKISDLETRFPINMNVLDATGTPRVMGLRACLIAWLDHRRVVLLRMSNWRLEKIE 376 Query: 385 RRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEE 444 +R+ +L GL+IA+LN+DE+I I+R EDKP+ +++SRF+L+E Q D IL+ RLR L +LEE Sbjct: 377 KRLHLLDGLMIAFLNLDEVIRIVREEDKPRDMLMSRFTLSELQADYILDTRLRQLARLEE 436 Query: 445 YQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSR 504 I+ E L E+E I +LL S K QW +I + EV++ RRTT+ + Sbjct: 437 MVIQDEHKKLSEEREGILALLGSEKMQWKRIDQLLVEVRKKLPSP-----RRTTYADAPV 491 Query: 505 ADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRIL 564 + ++ + KE ITV++S RGWIR+ K D S L FKEGD L + + TD+ L Sbjct: 492 GIEVAAIESYLPKEAITVILSKRGWIRAAKGKVEDPSELKFKEGDELSFLVPGYNTDKFL 551 Query: 565 LLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAF 624 +L+TDG+ TL L S RGHGE ++L++D+ + IVT F Y + K ++V+ G F Sbjct: 552 ILTTDGRFLTLSGDKLPSARGHGEPLRLMLDIEESAKIVTVFAYTAGAKRVMVAKNGYGF 611 Query: 625 IVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRG 684 ++ E + +AN R GK + V E M ++VTGD + V+GEN K+L++ + ++PEM+RG Sbjct: 612 VMNEEDAVANKRAGKQTMTVDGTEAMA-ALQVTGDLICVLGENNKVLVYPVTELPEMARG 670 Query: 685 KGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGF 744 KGV+LQ+YKDGG+ D+ + W D AG++ R D+ ++G+R G + P+G Sbjct: 671 KGVKLQAYKDGGVKDITVYDSNGSPQWFDGAGKA--RDFKDIKDYIGRRATAGKMAPRGL 728 >gi|332186872|ref|ZP_08388614.1| DNA topoisomerase IV, A subunit [Sphingomonas sp. S17] gi|332013205|gb|EGI55268.1| DNA topoisomerase IV, A subunit [Sphingomonas sp. S17] Length = 750 Score = 763 bits (1971), Expect = 0.0, Method: Compositional matrix adjust. Identities = 381/731 (52%), Positives = 505/731 (69%), Gaps = 7/731 (0%) Query: 25 ALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIG 84 AL ERYL YALSTI R++PD+RDG KPVHRR++ AM + LD A +KK AR+VG+VIG Sbjct: 21 ALSERYLVYALSTITARSLPDVRDGLKPVHRRLLWAMRLLKLDPAAGYKKCARVVGDVIG 80 Query: 85 KLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELIL 144 K HPHGDQSVYD++VRLAQ F RYPL+ GQGNFGNIDGD+AAAYRYTEAR+TQVA ++ Sbjct: 81 KYHPHGDQSVYDAMVRLAQDFALRYPLVDGQGNFGNIDGDNAAAYRYTEARLTQVAIDLM 140 Query: 145 QGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAAL 204 G+DEDAV +R TYN E+ EP +FP FPNLLANG SGIAVGMATSIP HN E+ +AA+ Sbjct: 141 DGLDEDAVAYRPTYNGEEQEPELFPGLFPNLLANGASGIAVGMATSIPPHNAAELLDAAI 200 Query: 205 ALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRG 264 ++D+P+ + +L + GPDFPTGGI+V++ + ESY GRGGFRVRARW +E G Sbjct: 201 HVVDHPDADDDAILARVKGPDFPTGGIVVDAPAILRESYTTGRGGFRVRARWEIEREKGG 260 Query: 265 SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDL 324 W IVV+EIPY V K +LIE+IA LI K++P+L D+RDES VRIVL P++R++DP + Sbjct: 261 GWQIVVSEIPYGVAKGKLIEQIATLINDKKLPILADVRDESDAQVRIVLEPRSRTVDPQV 320 Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384 LM+ +F SD+ETR LN+NVL R P+VM L L W+ H+ VL RRS R+ I Sbjct: 321 LMDGLFRFSDLETRISLNLNVLDKDRTPRVMSLREALAAWVEHQFVVLRRRSEHRLGKIA 380 Query: 385 RRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEE 444 R+E+L G L+AYLN+D +I IIR ED+PK VM+ F LT+ Q +AILN+RLRSLR+LEE Sbjct: 381 DRIELLDGYLVAYLNLDRVIEIIRTEDEPKAVMIEEFRLTDRQAEAILNMRLRSLRRLEE 440 Query: 445 YQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSR 504 ++I+ E D L E+E++ LL S ++Q ++ ++ ++++ + T LG RRT E + Sbjct: 441 FEIRGERDKLDKEREQLTQLLGSEQRQRTRMKKDLGKIRDRYGLETILGARRTLIEEAAP 500 Query: 505 ADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FKEGDSLKIALHAHTTD 561 L +AMIE+EPITV++S RGWIR++K H VDL++ FKEGD A HA TTD Sbjct: 501 TRDIPL-EAMIEREPITVILSQRGWIRAMKGH-VDLASAETAKFKEGDGPAFAFHAQTTD 558 Query: 562 RILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKG 621 ++LL + +G+ +TL A L GRG GE ++ +IDL+ + IV KLLV +S G Sbjct: 559 KLLLAAANGRFFTLAADKLPGGRGFGEPVRAMIDLDGSIGIVGFLPAARAAKLLVAASDG 618 Query: 622 NAFIVEESEIIANTRKGKTFLKVSSEEKMKLV--VKVTGDHVAVVGENRKLLIFSIDQIP 679 FIV ++ IA TRKGKT L + +K+V V D+VA +G+NRKLL+F + + Sbjct: 619 RGFIVPAADTIAETRKGKTVLTPRAGASLKVVRPVGAEDDYVAAIGDNRKLLVFPLTEFV 678 Query: 680 EMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSL 739 E+SRG GV+LQ Y+DGG+SD F +GL+W R+E DL W RG G + Sbjct: 679 ELSRGTGVQLQRYRDGGLSDATTFVFKDGLSWPMGGETGRVRTEADLSAWRTARGAAGRM 738 Query: 740 VPKGFPRSGKF 750 P GFPR +F Sbjct: 739 PPTGFPRDNRF 749 >gi|149185900|ref|ZP_01864215.1| DNA topoisomerase IV subunit A [Erythrobacter sp. SD-21] gi|148830461|gb|EDL48897.1| DNA topoisomerase IV subunit A [Erythrobacter sp. SD-21] Length = 765 Score = 761 bits (1964), Expect = 0.0, Method: Compositional matrix adjust. Identities = 365/741 (49%), Positives = 510/741 (68%), Gaps = 16/741 (2%) Query: 25 ALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIG 84 AL ERYL YALSTI R++PDLRDG KPVHRR++ M ++ LD + FKKSAR+VGEVIG Sbjct: 25 ALSERYLVYALSTITARSLPDLRDGLKPVHRRLLWTMRQLKLDPASGFKKSARVVGEVIG 84 Query: 85 KLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELIL 144 K HPHGD + YD++VRLAQ F RYPL+ GQGNFGNIDGD+AAAYRYTEAR+T+ A ++ Sbjct: 85 KYHPHGDTAAYDAMVRLAQDFALRYPLVEGQGNFGNIDGDNAAAYRYTEARLTKTAMRLM 144 Query: 145 QGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAAL 204 +G+D VDF TYN E+ EP + P FPNLLANG SGIAVGMAT+IPSHNV EI +A L Sbjct: 145 EGLDAGTVDFIPTYNNEEEEPEIMPGLFPNLLANGASGIAVGMATNIPSHNVAEIVDATL 204 Query: 205 ALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW-------- 256 +IDNP + +L+E GPDF TGG++ ES E+I +Y GRG FRVR R+ Sbjct: 205 EVIDNPHVEHARLMEIFKGPDFATGGVVPESTETISHAYETGRGSFRVRGRFHAAEAEKE 264 Query: 257 -----CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311 +E +G G W +V++EIPYQV K +LIE+IA I +++P+LED+RDES E +RI Sbjct: 265 EDKQAGIERLGGGQWQLVISEIPYQVAKGKLIEQIAAAIADRKLPILEDVRDESDEQIRI 324 Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371 VL P++R++DP+LL ESI+ L+DMETRF LN+NVL R P VM L +L+ W+A + ++ Sbjct: 325 VLVPRSRNVDPELLKESIYKLTDMETRFGLNLNVLDRTRTPMVMGLKELLENWIASQIDI 384 Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431 L RRS R+ I RR+E++ G +IA+LN+D +I IIR ED+PKPVM+ F LT+ Q +AI Sbjct: 385 LQRRSQHRLDQIARRLELVDGYIIAFLNLDRVIEIIRTEDEPKPVMMDEFKLTDRQAEAI 444 Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491 LN+RLRSLRKLEE Q++ E D LL E+++++ LL S +Q ++ ++ +++ +S+ T Sbjct: 445 LNMRLRSLRKLEEMQLRGEKDELLKEQDELEKLLGSPARQRTRLKRDLGALRKEYSEDTA 504 Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551 LG RRTT E + A + ++ AMIEKEP+TV++S +GWIR K H +KEGD+ Sbjct: 505 LGARRTTIEEAAPAVEFSM-DAMIEKEPVTVILSQKGWIRGAKGHLPLDQEFKYKEGDAP 563 Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611 LHA TTD++LL+ DG+ +TL A L RG GE ++ +D++ V+ V+ Sbjct: 564 AFVLHAQTTDKLLLIGNDGRVFTLGADKLPGARGFGEPVRNTLDIDGQAQFVSVVVHSEG 623 Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV--VKVTGDHVAVVGENRK 669 ++L+ +S G F V ++A TRKG+ + V K+ + + DHVAVVG+NRK Sbjct: 624 QEVLLAASNGKGFAVGTDAMLAETRKGRQVMNVKGNVKLVVARPIAKAHDHVAVVGDNRK 683 Query: 670 LLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGW 729 L++F+++++P +++G+G +LQ+Y+DGG+SD F + +GL+W R+E ++ W Sbjct: 684 LVVFNLEELPRLAKGQGNKLQNYRDGGLSDATTFTMEDGLSWTMGGKEGRTRTEPEMWQW 743 Query: 730 LGKRGGVGSLVPKGFPRSGKF 750 RGG G L P+GFPR KF Sbjct: 744 KVARGGAGRLPPQGFPRDNKF 764 >gi|329115618|ref|ZP_08244340.1| DNA topoisomerase 4 subunit A [Acetobacter pomorum DM001] gi|326695046|gb|EGE46765.1| DNA topoisomerase 4 subunit A [Acetobacter pomorum DM001] Length = 735 Score = 757 bits (1955), Expect = 0.0, Method: Compositional matrix adjust. Identities = 371/736 (50%), Positives = 520/736 (70%), Gaps = 11/736 (1%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 +++ L AL ERYLAYALSTI R++PD+RDG KPVHRR+++AM ++ LD + FKK Sbjct: 7 HIEETKLAEALSERYLAYALSTIMSRSLPDVRDGLKPVHRRLVYAMHQLRLDPASGFKKC 66 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 AR+VG+VIGK HPHGD SVY++LVRLAQ F RYPL+ GQGNFG++DGD+ AA RYTEAR Sbjct: 67 ARVVGDVIGKFHPHGDASVYEALVRLAQDFAARYPLVEGQGNFGSVDGDNPAAMRYTEAR 126 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 +T+VA +L G+++DAVDFR TY+ E+ EPVV PS FPNLLANG +GIAVGMATSIP HN Sbjct: 127 LTEVAVALLDGIEDDAVDFRPTYDGEEQEPVVLPSAFPNLLANGAAGIAVGMATSIPPHN 186 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 E+C AA L+ P + ++LLE + GPDFPTGG+IVE ++I+++Y GRG FR+RAR Sbjct: 187 AAEVCAAAALLVRKPSATTQELLELMPGPDFPTGGLIVEDSDAILQAYETGRGSFRMRAR 246 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315 W VE+ +W IVVT+IPYQVQKSRLIE+IA+L+ K++PLL DIRDES +++R++L P Sbjct: 247 WEVEQGRFSTWHIVVTQIPYQVQKSRLIEQIADLLDQKKLPLLGDIRDESTDEIRLILEP 306 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 K R ++P++LME++F + +E+RF LNMNVL R P VM L +++ WL HR EVL RR Sbjct: 307 KTRGIEPEVLMETLFRATPLESRFGLNMNVLGADRSPGVMGLKQVIQAWLNHRHEVLERR 366 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435 S R+ A++RR+EIL G L YLN+DE+I IIR ED K +++ F LT+ Q +++LN+R Sbjct: 367 SRHRLTAVERRLEILSGFLAVYLNLDEVIRIIREEDDAKASLIATFKLTDLQAESVLNMR 426 Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495 LRSLR+LEE +I+ E D L AE+ + +LL+S KQ+W I E+ + + F K LG R Sbjct: 427 LRSLRRLEEMEIRKEHDALSAEQAALMALLDSEKQRWKTIERELTTMIKAFGKGR-LGER 485 Query: 496 RTTFCEVSR-ADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIA 554 R+T + D + +++ +E+EP+T+++S +GW+R++K H+VDL FKEGD+ K+A Sbjct: 486 RSTILSAPKPVDISVVEE--VEREPLTMILSQKGWVRAVKGHNVDLENQKFKEGDAFKLA 543 Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614 + T+DR+ +TDG+AYT+ +L GRG G+ I+LLIDL++++D++ F + + Sbjct: 544 IPCQTSDRLCFFATDGRAYTVKGADLPRGRGDGQPIRLLIDLSNDEDLLAVFPIEDGKRR 603 Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFS 674 LV SS G +VEE ++A R G+ L + E ++ V GDHVAVVG+NR+ LIF Sbjct: 604 LVASSAGRGMLVEEEALVAEKRSGRQVLNLKEGEFARICVPAEGDHVAVVGDNRRFLIFP 663 Query: 675 IDQIPEMSRGKGVRLQSYKD-GGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKR 733 ++Q+P M+RG GV LQ Y D GG+ + F +GL W G + R DL W+ +R Sbjct: 664 LEQLPVMARGLGVALQKYSDGGGLRQAVVFTAADGLHW---PGTARVRQFADLQDWVSRR 720 Query: 734 GGVGSLVPKGFPRSGK 749 VG + P P +GK Sbjct: 721 AAVGKVAP---PWAGK 733 >gi|329890068|ref|ZP_08268411.1| DNA topoisomerase IV, A subunit [Brevundimonas diminuta ATCC 11568] gi|328845369|gb|EGF94933.1| DNA topoisomerase IV, A subunit [Brevundimonas diminuta ATCC 11568] Length = 737 Score = 757 bits (1955), Expect = 0.0, Method: Compositional matrix adjust. Identities = 367/720 (50%), Positives = 503/720 (69%), Gaps = 7/720 (0%) Query: 25 ALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIG 84 AL RYLAYALSTI RA+PD+RDGFKPVHRRI++AM +M L+ AA +K A++VGEV+G Sbjct: 21 ALSRRYLAYALSTITNRALPDVRDGFKPVHRRIMYAMHQMRLNPQAAARKCAKVVGEVMG 80 Query: 85 KLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELIL 144 HPHGD S+Y++LVRLAQ F QRYPL+ GQGNFGNIDGDSAAA RYTE ++T A L+L Sbjct: 81 GYHPHGDASIYEALVRLAQDFAQRYPLVDGQGNFGNIDGDSAAAMRYTECKLTPAAVLLL 140 Query: 145 QGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAAL 204 G+D+DAVDFR TY+++D EPVV P+ FPNLLANG+SGIAVGMATSIP HNV E+ +A Sbjct: 141 DGIDQDAVDFRPTYDDQDEEPVVLPAGFPNLLANGSSGIAVGMATSIPPHNVGELIDACQ 200 Query: 205 ALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRG 264 L++ P+ + E L++ + GPDFPTGG+ VE S++++Y GRGG R+RA W E++GRG Sbjct: 201 LLLEQPDATTEDLVKIVPGPDFPTGGVSVEGHASMLDAYETGRGGVRLRAAWDTEDLGRG 260 Query: 265 SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDL 324 W IVVTEIPYQVQKS+LIE++A+LI K+ PLL D+RDESAED+R++L PK+R+++P++ Sbjct: 261 VWRIVVTEIPYQVQKSKLIEQLADLIENKKAPLLADVRDESAEDIRLILEPKSRTVEPEV 320 Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384 LMES+F LSD+ETRFP+NMNVL P+VM L L+ +L HRR VL RRS +R+ ++ Sbjct: 321 LMESLFKLSDLETRFPINMNVLDATGTPRVMGLKDCLRAFLDHRRVVLNRRSQWRIARVE 380 Query: 385 RRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEE 444 +R+ +L+GL I +LN+DE+I I+R E++PK +++ F L+E Q D IL+ RLR L +LEE Sbjct: 381 KRLHLLEGLRIVFLNLDEVIRIVREEEQPKAALIATFGLSELQADFILDTRLRQLARLEE 440 Query: 445 YQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSR 504 I+ E L E + +L +S +QW I E+ V++ + RRT + Sbjct: 441 MTIEKEFKELSEELAALQALTSSETKQWKAIGKELEAVRKAL-----VSPRRTVIGDAVD 495 Query: 505 ADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRIL 564 A +A I +E ITV++S+RGWIR+ K D S L FKEGD L + A+TTD++L Sbjct: 496 ASAFVAPEAFIPREAITVILSDRGWIRAAKGKVDDPSELKFKEGDKLGFLVPAYTTDKLL 555 Query: 565 LLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAF 624 + ++DG+ +T+ A L SGRGHGE ++L+IDL+ +I+ ++ KLL+ S G F Sbjct: 556 VGASDGRIFTIGADKLASGRGHGEPLRLMIDLDEKAEIINVVAHEPDAKLLIASKAGYGF 615 Query: 625 IVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRG 684 + E++++A R GK L +++ + DHVAV+GEN K LIF + ++PEM RG Sbjct: 616 VAPENDLLAQKRGGKQVLNGEMLAMLRIPSQPQADHVAVIGENIKTLIFPLAELPEMGRG 675 Query: 685 KGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGF 744 KGV+LQ+YK GG++DV F G W D GR R+ D WLGKR G G P+G Sbjct: 676 KGVKLQNYKQGGLADVTVFNAEAGPEWADGGGR--RRNWPDWKDWLGKRAGAGRQGPRGL 733 >gi|51473276|ref|YP_067033.1| DNA topoisomerase IV subunit A [Rickettsia typhi str. Wilmington] gi|81390282|sp|Q68XU1|PARC_RICTY RecName: Full=DNA topoisomerase 4 subunit A; AltName: Full=Topoisomerase IV subunit A gi|51459588|gb|AAU03551.1| DNA topoisomerase IV subunit A [Rickettsia typhi str. Wilmington] Length = 737 Score = 755 bits (1950), Expect = 0.0, Method: Compositional matrix adjust. Identities = 364/739 (49%), Positives = 526/739 (71%), Gaps = 4/739 (0%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 E ++ + AL ERYLAYALSTI R++PD+RDG KPVHRR+++AM ++ L+ + +K Sbjct: 3 EAKIENIDFGNALSERYLAYALSTIMSRSLPDVRDGLKPVHRRLLYAMLQLRLEPNSGYK 62 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 K AR+VG+VIGK HPHGD +VYD+LVRLAQ F RYPLI GQGNFG+IDGD+AAA RYTE Sbjct: 63 KCARVVGDVIGKYHPHGDVAVYDTLVRLAQHFSLRYPLIDGQGNFGSIDGDNAAAMRYTE 122 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 +RMT++ L+++ +D+D VDFR TY++ D EPV+ P+ FPNLLANG+ GIAVGMAT+IP Sbjct: 123 SRMTEICMLLMKDIDKDTVDFRSTYDDSDLEPVIMPASFPNLLANGSEGIAVGMATNIPP 182 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E+C+A L LIDNP+ + ++ +I GPDFPTGGII++ + I +Y GRG FRVR Sbjct: 183 HNLHELCDALLYLIDNPQAGVNDIMNFIKGPDFPTGGIIIDQTKVINAAYTTGRGSFRVR 242 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313 +RW EE+ G++ IVVTEIPYQVQKS+LIE+IA L+ K+IPL+ IRDES + +R+V+ Sbjct: 243 SRWEKEELSYGTYQIVVTEIPYQVQKSKLIEQIAILLKDKKIPLISSIRDESTDIIRLVI 302 Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373 P++RS DP ++MES+F L+++E+R LNMNV+ VP+VM + IL+E+L HR+ ++ Sbjct: 303 EPRDRSCDPQIVMESLFKLTNLESRIQLNMNVIGSNNVPRVMNIVEILQEFLVHRQNIIT 362 Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILN 433 RRS++ + I +R+EILK L I YLN+DEII IIR ED+PK +++ RF ++E QV+ ILN Sbjct: 363 RRSTYLLNKIKQRLEILKVLKIVYLNLDEIIEIIRREDEPKTIIMERFKISEIQVEVILN 422 Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493 RLR+L+KLEE+ I E NL ++ ++ +L + K+ W + EI+ V+ F +T +G Sbjct: 423 TRLRALQKLEEHAIIDEHSNLQKQQAILEKILKNHKELWKIVKKEIKSVQTQFGLNTIIG 482 Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKI 553 RRT+F EV ++ A I KEPIT++ S GWIR LK H+ DLS + +KEGD+ K Sbjct: 483 ARRTSFEEVDLTNQVIDITAFITKEPITIICSKMGWIRLLKGHNTDLSTIKYKEGDAEKF 542 Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613 + A+TTD+IL++S+ G+ +TL A N+ G+G +I+LL+D+ +N DI VY Sbjct: 543 IIEAYTTDKILIISSKGRFFTLLADNISKGKGTAVSIKLLVDIGNN-DITNILVYKPYQL 601 Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIF 673 LL+ SS G F+V +E+IA T+ GK + + + V G+ +A + E+R+LLIF Sbjct: 602 LLLASSIGKGFLVNSNEVIAQTKAGKQIMNIPEGYACITCLPVNGNSIACINESRRLLIF 661 Query: 674 SIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKR 733 +I++IPEM +G+GV LQ +K+ + D+ F +GL+W D G+ + E +++ +LGKR Sbjct: 662 NINEIPEMKKGQGVVLQRFKNAKLLDIKIFNKEDGLSWND--GKKI-QLEKNIVAFLGKR 718 Query: 734 GGVGSLVPKGFPRSGKFLS 752 G G+L P GFP++ +F S Sbjct: 719 GSAGTLPPIGFPKNNRFSS 737 >gi|296116241|ref|ZP_06834858.1| DNA topoisomerase IV subunit A [Gluconacetobacter hansenii ATCC 23769] gi|295977175|gb|EFG83936.1| DNA topoisomerase IV subunit A [Gluconacetobacter hansenii ATCC 23769] Length = 740 Score = 755 bits (1949), Expect = 0.0, Method: Compositional matrix adjust. Identities = 363/728 (49%), Positives = 516/728 (70%), Gaps = 10/728 (1%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 EN K V AL ERYLAYA+STI R++PD+RDG KPVHRR+I AM ++ LD + FKK Sbjct: 11 ENTKLVD---ALSERYLAYAMSTIMSRSLPDVRDGMKPVHRRMIFAMQQLRLDPTSGFKK 67 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 AR+VG+VIGK HPHGD SVY++LVRLAQ F RYPL+ GQGNFG++DGD+AAA RYTEA Sbjct: 68 CARVVGDVIGKYHPHGDASVYEALVRLAQDFAVRYPLVEGQGNFGSVDGDNAAAMRYTEA 127 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 R+T+VA+ +L+G+++D+VDFR TY+ E+ EPVV P+ FPNLLANG +GIAVGMATSIP H Sbjct: 128 RLTEVAKALLEGINDDSVDFRPTYDGEEHEPVVLPAAFPNLLANGAAGIAVGMATSIPPH 187 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 NV EIC AA+ LI +P++++ KLLE + GPDFPTG +IVE R++I +Y GRG FR+RA Sbjct: 188 NVGEICAAAMLLIRDPDVTVAKLLEVMPGPDFPTGCMIVEDRDAIARAYETGRGSFRIRA 247 Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314 RW VE+ G+W IVVTEIPYQVQKSRLIE++A+L+ K++PLL DIRDES+ D+R+VL Sbjct: 248 RWEVEQGRFGTWQIVVTEIPYQVQKSRLIEQVADLMEQKKLPLLGDIRDESSADIRLVLE 307 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 PK+R ++P++LME++F + +E+RF LNMNVL +VP V L +L+ WL HR +VL R Sbjct: 308 PKSRGIEPEVLMETMFRATQLESRFGLNMNVLGADQVPGVRSLKEVLQAWLDHRHDVLVR 367 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNL 434 R+ R+ A+DRR+EIL G L YLN+DE+I IIR ED + +++ F L+E Q +++LN+ Sbjct: 368 RTRHRLDAVDRRLEILDGFLAVYLNLDEVIRIIREEDDARASLMAAFDLSELQAESVLNM 427 Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494 RLRSLR+LEE +I+ E L E+ + +L+ +W I EI+ +++ F T LG Sbjct: 428 RLRSLRRLEETEIRKEHAALTEERAGLLALMEKESLRWKHITSEIKGIQKKFGGGT-LGA 486 Query: 495 RRTTFCEVSRADKATLQQAM-IEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKI 553 RR+T + + + A+ +E+EP++V++S +GWIR+++ H VD A FKEGD L++ Sbjct: 487 RRSTLA--APPAEVDISAALPVEREPLSVILSQKGWIRTVRGHGVDPEAQKFKEGDGLRL 544 Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613 + ++DR+ +TDG+A+TL A +L GRG G+ ++L+I+L++ +DI+T F + Sbjct: 545 IVECQSSDRLCCFATDGRAFTLRAADLPRGRGDGQPLRLMIELSNEEDIITIFPVTQDAR 604 Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIF 673 L+ SS G IV E +++A R GK L + E ++ GDHV V+G N+++L+F Sbjct: 605 RLLASSAGRGMIVREEDMVAEKRTGKQVLNLKEGESAQVCALAQGDHVLVIGSNKRMLVF 664 Query: 674 SIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKR 733 ++ Q+PEM+RG GV LQ YK+G + D + F G+ W D R+ +D+ +GKR Sbjct: 665 ALTQLPEMTRGLGVALQKYKEGHLRDAVVFAGDAGVAWPDP---QRVRTLSDMKEQMGKR 721 Query: 734 GGVGSLVP 741 G +G P Sbjct: 722 GDMGRPAP 729 >gi|15603946|ref|NP_220461.1| DNA topoisomerase IV subunit A [Rickettsia prowazekii str. Madrid E] gi|7387992|sp|Q9ZE79|PARC_RICPR RecName: Full=DNA topoisomerase 4 subunit A; AltName: Full=Topoisomerase IV subunit A gi|3860637|emb|CAA14538.1| TOPOISOMERASE IV SUBUNIT A (parC) [Rickettsia prowazekii] gi|292571664|gb|ADE29579.1| Topoisomerase IV subunit A [Rickettsia prowazekii Rp22] Length = 738 Score = 742 bits (1915), Expect = 0.0, Method: Compositional matrix adjust. Identities = 366/738 (49%), Positives = 524/738 (71%), Gaps = 5/738 (0%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 E ++ + AL ERYLAYALSTI R++PD+RDG KPVHRR+++AM ++ L+ + +K Sbjct: 3 EAKIENIDFGNALSERYLAYALSTIMSRSLPDVRDGLKPVHRRLLYAMLQLRLEPNSGYK 62 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 K AR+VG+VIGK HPHGD +VYD+LVRLAQ F RYPLI GQGNFG+IDGD+AAA RYTE Sbjct: 63 KCARVVGDVIGKYHPHGDVAVYDTLVRLAQHFSLRYPLIDGQGNFGSIDGDNAAAMRYTE 122 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 +RMT++ L+++ +D+D VDFR TY++ D EPV+ P+ FPNLLANG+ GIAVGMAT+IP Sbjct: 123 SRMTEICMLLMEDIDKDTVDFRSTYDDSDLEPVIMPASFPNLLANGSEGIAVGMATNIPP 182 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E+C+A L LIDNP+ I ++ +I GPDFPTGGII++ E I +Y GRG FRVR Sbjct: 183 HNLHELCDALLYLIDNPQAGINDIMNFIKGPDFPTGGIIIDKAEVINAAYTTGRGSFRVR 242 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313 +RW EE+ G++ IVVTEIPYQ+QKS+LIE+IA L+ K+IPL+ IRDES + +R+V+ Sbjct: 243 SRWEKEELSYGTYQIVVTEIPYQIQKSKLIEQIAILLKDKKIPLISSIRDESTDIIRVVI 302 Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373 P++RS DP ++MES+F L+++E+R LNMNV+ VP+VM + IL+E+L HR+ ++ Sbjct: 303 EPRDRSCDPQIVMESLFKLTNLESRIQLNMNVIGSNNVPRVMNILEILQEFLVHRKNIII 362 Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILN 433 RRS++ + I +R+EILK L I YLN+DEII IIR ED+PK +++ RF ++ QV+ ILN Sbjct: 363 RRSTYLLNKIKQRLEILKVLRIVYLNLDEIIEIIREEDEPKTIIMERFKISAIQVEVILN 422 Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493 RLRSL+KLEE+ I E NL ++ ++ +L + K+ W + EI+ V+ F +T +G Sbjct: 423 TRLRSLQKLEEHAIIDEHSNLQKQQAILEKILKNHKELWQIVKKEIKAVQTKFGLNTIIG 482 Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKI 553 RRT+F EV ++ A I KEPIT++ S GW+RSLK H+ DLS + +KEGD+ K Sbjct: 483 ARRTSFEEVDLTNQVVDITAFITKEPITIICSKMGWVRSLKGHNTDLSTIKYKEGDTEKF 542 Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE-AIQLLIDLNHNQDIVTAFVYDSTC 612 + A+TTD+IL++S+ G+ +TL A N+ G+G G +I+LL+D+ +N DI VY Sbjct: 543 IIEAYTTDKILIISSKGRFFTLLADNISKGKGTGGVSIKLLVDIGNN-DITNILVYKPNQ 601 Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLI 672 LL+ SS G F+V +E+IA T+ GK + + + V GD +A +GE+R+LL+ Sbjct: 602 LLLLASSIGKGFLVNSNEVIAQTKTGKQIMNIPEGYSCIACLPVNGDSIACIGESRRLLV 661 Query: 673 FSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGK 732 F+ID+IPEM +G+GV LQ +K+ + D+ F +GL+W D E +++ +LGK Sbjct: 662 FNIDEIPEMKKGQGVVLQRFKNAKLLDIKIFNKQDGLSWNDGTKIQL---EKNIVAFLGK 718 Query: 733 RGGVGSLVPKGFPRSGKF 750 RGG G+ P GFP++ +F Sbjct: 719 RGGFGTFPPIGFPKNNRF 736 >gi|58038562|ref|YP_190526.1| DNA topoisomerase IV subunit A [Gluconobacter oxydans 621H] gi|58000976|gb|AAW59870.1| Topoisomerase IV subunit A [Gluconobacter oxydans 621H] Length = 736 Score = 734 bits (1895), Expect = 0.0, Method: Compositional matrix adjust. Identities = 357/733 (48%), Positives = 505/733 (68%), Gaps = 7/733 (0%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 +++ L AL ERY+AYA+STI R++PD+RDG KPVHRR+++AM ++ LD + FKK Sbjct: 8 HIEDTKLAEALSERYIAYAMSTIMSRSLPDVRDGLKPVHRRLLYAMQQLRLDPTSGFKKC 67 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 AR+VG+VIGK HPHGD SVY++LVRLAQ F RYPL+ GQGNFG+IDGD AAA RYTE+R Sbjct: 68 ARVVGDVIGKFHPHGDASVYEALVRLAQDFAVRYPLVEGQGNFGSIDGDGAAAMRYTESR 127 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 +T+VA+ +L G+ +DAVDFR TY+ ED EP+V P FPNLLANG +GIAVGMATSIP HN Sbjct: 128 LTEVAQALLDGIQDDAVDFRATYDNEDHEPIVLPGTFPNLLANGAAGIAVGMATSIPPHN 187 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 EIC AA LI+ P+++I +L++ + GPDFPTGGI+VE R+SI+ SY GRG FR RAR Sbjct: 188 AAEICRAAKLLIEKPDVTIAELVDLMPGPDFPTGGILVEERDSIIRSYETGRGSFRTRAR 247 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315 W VE+ G+W I+VTEIPYQVQKSRLIE+IA+L+ +++PLL D+RDES D+R+VL P Sbjct: 248 WEVEQGRFGTWVIIVTEIPYQVQKSRLIEQIADLMEQRKLPLLGDVRDESTTDIRLVLEP 307 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 K + ++P++LME++F + +E RF LNMNVL RVP V+ L +L+ WL H EVL RR Sbjct: 308 KTKGVEPEVLMETLFRNTALENRFSLNMNVLGGDRVPGVLSLKQVLRAWLDHVHEVLVRR 367 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435 S+ R+ A+ RR+EIL+G L YLN+DE+I IIR ED+PK +++ FSLT+ Q +A+LN+R Sbjct: 368 SNHRLAAVLRRLEILEGFLAVYLNLDEVIRIIREEDEPKVSLMATFSLTDVQAEAVLNMR 427 Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495 LRSLR+LEE +I+ E D L E++ +++LL S +++W +I ++ + F S LG R Sbjct: 428 LRSLRRLEEMEIRRERDKLADEQKALETLLGSERRRWTRIGKDLDGTIKKFG-SGPLGER 486 Query: 496 RTTFCEVSRADKATLQQAM-IEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIA 554 RT + + + A+ I++EP+TV++S GWIR++K H +D FKEGD ++ Sbjct: 487 RTLIA--AAPELIDISAALEIDREPLTVLLSREGWIRAMKGHGLDPQGHRFKEGDEGWLS 544 Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614 + +TDR+ L+S+ GKAYT+ A +L GRG G+ + ++D+ +VT F + Sbjct: 545 VECQSTDRLCLISSSGKAYTIKAADLPRGRGFGQPFRTVVDVPQEDRVVTLFPVSDEGRR 604 Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFS 674 L+ S+ G IV E+ ++A R GK + +++ V V G HV +G+N++ LIF Sbjct: 605 LIASAAGRGMIVSEAGLVAEKRTGKQVFNIKDGDEVFACVPVGGTHVLTLGQNKRALIFP 664 Query: 675 IDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRG 734 ++Q+PEM+RG GV Q D + D+ + EGL W + R+ DL G+RG Sbjct: 665 LEQVPEMTRGGGVAFQKLGDSTLRDIRTLTLSEGLLWQEG---QRVRATADLAPLEGRRG 721 Query: 735 GVGSLVPKGFPRS 747 VG P+ R+ Sbjct: 722 AVGRAAPQWMLRN 734 >gi|163744726|ref|ZP_02152086.1| DNA topoisomerase IV subunit A [Oceanibulbus indolifex HEL-45] gi|161381544|gb|EDQ05953.1| DNA topoisomerase IV subunit A [Oceanibulbus indolifex HEL-45] Length = 813 Score = 722 bits (1864), Expect = 0.0, Method: Compositional matrix adjust. Identities = 384/816 (47%), Positives = 523/816 (64%), Gaps = 75/816 (9%) Query: 6 ISNSNTLVEENVKAVS--LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63 +S++ T E + +S LR AL ERYL YALSTI RA+PD RDG KPVHRRI+ AM E Sbjct: 1 MSDTTTPPELDPNDLSEPLRRALGERYLTYALSTIMHRALPDARDGLKPVHRRILFAMRE 60 Query: 64 MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123 + L F+KSA+I G+V+G HPHGD ++YD++ RLAQ F RYPL+ GQGNFGNIDG Sbjct: 61 LRLSSTGGFRKSAKISGDVMGNYHPHGDAAIYDAMARLAQDFNVRYPLVDGQGNFGNIDG 120 Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183 D+ AA RYTEARMT VAE +L+G++E+AVD+R+ Y+ +EPVV P++FPNLLANG+SGI Sbjct: 121 DNPAASRYTEARMTAVAEAMLEGLNENAVDYRENYDGTLTEPVVLPAQFPNLLANGSSGI 180 Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243 AVGMAT+IP HN+ E+C+A + LI P+ E LL Y+ GPDFPTGG+IVE E+I +Y Sbjct: 181 AVGMATNIPPHNIAELCDACIHLIKTPDARDETLLNYVPGPDFPTGGVIVEPPENIANAY 240 Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303 R GRG FR+R RW VE++GRG+W IVVTEIPYQVQKS+LIEKIAELI AK+IP+L D+RD Sbjct: 241 RTGRGSFRLRCRWEVEDLGRGAWQIVVTEIPYQVQKSKLIEKIAELIQAKKIPILADVRD 300 Query: 304 ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL-- 361 ESAEDVR+++ P+++++DP +LM +F SD+E RF LNMNVL G+ P+V L +L Sbjct: 301 ESAEDVRMIIEPRSKNVDPAVLMGMLFRNSDLEVRFSLNMNVLIDGQTPKVCSLKEVLRA 360 Query: 362 -----KEWLAHRREVLFRRSSFRMQAI----------DRRVEILK-------GLL----- 394 +E L R + R++ + DR +EI++ L+ Sbjct: 361 FLDHRREVLQRRSRHRMDKIDHRLEVLQGLITAFLNLDRVIEIIRYDDDPKAALMYEDWS 420 Query: 395 -------------------IAYLNIDEIIAIIRNEDKPKPVMVS--------------RF 421 +A +++ ++ I E + V+ Sbjct: 421 RVHQDTLARAMDEAAYISPLAGVDVSKLAVIADAEAQATGVLTESGDTRAVPHSYAGREN 480 Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481 L++ Q +AILN+RLRSLR+LEE + E D L++E+ ++ LL++ QW IA ++R Sbjct: 481 GLSDVQAEAILNMRLRSLRRLEEDALVKERDTLMSERAGLEDLLDNEDLQWTTIADQLRA 540 Query: 482 VKEIFSK-----STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSH 536 K+ F K G+R +TF + ++ AMI++EPITVV S GWIR++ H Sbjct: 541 TKKQFGKDWVIDGIKRGQRLSTFETAGEVEDVPIE-AMIDREPITVVCSQMGWIRAMTGH 599 Query: 537 SVDLS-ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLID 595 +DL+ L FK+GD + HA TTDR+L+ ++G+ YT+ A NL GRG GE ++L++D Sbjct: 600 -IDLNRELKFKDGDGPRFIFHAETTDRLLVFGSNGRFYTVSAANLPGGRGMGEPLRLMVD 658 Query: 596 LNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655 L + IV+ F++ KLLV SS G+ F+V E E++A TR GK L V + LV Sbjct: 659 LPNEVQIVSLFIHQPGRKLLVASSAGDGFVVPEDEVVAQTRSGKQVLNVRGDGVAALVCH 718 Query: 656 -VTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDS 714 V+GD VA VGENRK+L+F +D++PEM RGKGVRLQ YKDGG+SD F GL+W D Sbjct: 719 PVSGDSVATVGENRKVLVFGLDELPEMGRGKGVRLQKYKDGGLSDATTFTRDAGLSWQDP 778 Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750 AGR+ R+E DL W GKR G + P+GFPR KF Sbjct: 779 AGRT--RTEADLAEWTGKRASSGRMAPRGFPRDNKF 812 >gi|84685508|ref|ZP_01013406.1| DNA topoisomerase IV, A subunit [Maritimibacter alkaliphilus HTCC2654] gi|84666665|gb|EAQ13137.1| DNA topoisomerase IV, A subunit [Rhodobacterales bacterium HTCC2654] Length = 856 Score = 721 bits (1862), Expect = 0.0, Method: Compositional matrix adjust. Identities = 384/822 (46%), Positives = 522/822 (63%), Gaps = 81/822 (9%) Query: 3 VDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62 D + + + + E A LR A+ +RYL YALSTI RA+PD RDG KPVHRRI+ AM Sbjct: 41 TDTVDDPDNPISEF--AEPLRRAIGDRYLTYALSTIMNRALPDARDGLKPVHRRILFAMR 98 Query: 63 EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122 E+ L+ G F+KS++I G+V+G HPHGD ++YD++ RLAQ F RYPL+ GQGNFGNID Sbjct: 99 ELRLNSGGRFRKSSKISGDVMGNYHPHGDAAIYDAMARLAQDFNVRYPLVDGQGNFGNID 158 Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182 GD+ AA RYTEARMT VAE +L+G+DEDAVDFR+ Y+ EPVV P+ FP+LLANG +G Sbjct: 159 GDNPAASRYTEARMTIVAEALLEGLDEDAVDFRENYDGTLREPVVLPATFPHLLANGAAG 218 Query: 183 IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242 IAVGMAT+IP HN+ E+ +A L LI P+ + LL YI GPDFPTGG+IVE RE+I E+ Sbjct: 219 IAVGMATNIPPHNISELVDACLHLIKTPDARDDTLLNYIPGPDFPTGGVIVEPRENIAEA 278 Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302 YR GRG R+R++W VE++GRG W I+VTEIPYQVQKS+LIEK+AE+I K++PLL D+R Sbjct: 279 YRTGRGSIRLRSKWEVEDLGRGQWQIIVTEIPYQVQKSKLIEKLAEVIQTKKVPLLADVR 338 Query: 303 DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362 DESA+DVRIVL PK R+++P++LM +F SD+E RF LNMNVL G P+V L +L+ Sbjct: 339 DESADDVRIVLEPKTRNVEPEMLMGLLFRNSDLEVRFSLNMNVLIDGLTPKVCSLKEVLR 398 Query: 363 -------EWLAHRREVLFRRSSFRMQAI----------DRRVEILK-------------- 391 E L R + + R++ + DR ++I++ Sbjct: 399 AFLDFRREVLIRRSQHRMEKIDHRLEVLEGFIIAFLNLDRVIDIIRYDDDPKAALMYEDW 458 Query: 392 ----------------------GLLIAYLNIDE---------IIAIIRNEDKPKPVMVSR 420 G+ +A L + E I + PK + Sbjct: 459 SRPHQDTIARATNEHDYVSPLAGIDVASLELREDETATAPEIITDNTGSGATPKRFVGRS 518 Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480 L++ Q DAILN+RLRSLR+LEE ++ E D L+ E+ ++ LL+S QW +I E++ Sbjct: 519 EGLSDVQADAILNMRLRSLRRLEELELIRERDALMEERAGLEDLLDSEDLQWGRIGDELK 578 Query: 481 EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL 540 + K+ F K G RRT F E + L+ AMIE+EP+T+V S GWIR++ H VDL Sbjct: 579 DAKKKFGKDYVAGARRTQFAEAAEVPDVPLE-AMIEREPVTIVCSQMGWIRAMSGH-VDL 636 Query: 541 S-ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHN 599 + FK+GD + A HA TTD+I++ + +G+ YTL A NL GRG GE ++L++DL ++ Sbjct: 637 TRDFKFKDGDGPRFAFHAETTDKIIVFAANGRFYTLGASNLPGGRGMGEPLRLMVDLPND 696 Query: 600 QDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD 659 +I+ FV+ KL+V S GN FIV E++++A T+ GK L V S++ KLV V GD Sbjct: 697 VEIIDMFVHAPDRKLIVASKGGNGFIVPEADVVAQTKNGKQVLNV-SDDVAKLVKPVAGD 755 Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYK-----------DGGISDVICFKICEG 708 HVAVV ENRKLL+F I ++PEM RGKGVRLQ Y DGG+SD+ F + G Sbjct: 756 HVAVVSENRKLLVFPIAELPEMGRGKGVRLQKYGSARGRQGTLDLDGGLSDLTTFDLATG 815 Query: 709 LTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750 L+W + R+ R+E D+ W+GKR GVG + P GFP+S F Sbjct: 816 LSWAATGDRT--RTEVDMSPWIGKRAGVGKMPPHGFPKSNTF 855 >gi|83855001|ref|ZP_00948531.1| DNA topoisomerase IV subunit A [Sulfitobacter sp. NAS-14.1] gi|83842844|gb|EAP82011.1| DNA topoisomerase IV subunit A [Sulfitobacter sp. NAS-14.1] Length = 696 Score = 717 bits (1851), Expect = 0.0, Method: Compositional matrix adjust. Identities = 353/699 (50%), Positives = 487/699 (69%), Gaps = 35/699 (5%) Query: 83 IGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAEL 142 +G HPHGD ++YD++ RLAQ F RYPL+ GQGNFGNIDGD+ AA RYTEARMT VAE Sbjct: 1 MGNYHPHGDAAIYDAMARLAQDFNVRYPLVDGQGNFGNIDGDNPAASRYTEARMTAVAEA 60 Query: 143 ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEA 202 +L+G++E+AVDFR+ Y+ +EP V P++FPNLLANG+SGIAVGMAT+IP HN+ E+ +A Sbjct: 61 MLEGLNENAVDFRENYDGTLTEPAVLPAQFPNLLANGSSGIAVGMATNIPPHNISELVDA 120 Query: 203 ALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVG 262 + LI P+ + LL+Y+ GPDFPTGGIIVE E+I +YR G+GGFR+R RW E++G Sbjct: 121 CIHLIKTPDARDDTLLKYVPGPDFPTGGIIVEPPENIANAYRTGKGGFRLRCRWETEDLG 180 Query: 263 RGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDP 322 RG+W IV+TEIPYQVQKS+LIEKIAELI K+IP+L D+RDESA+D+R+++ P+++++DP Sbjct: 181 RGAWQIVITEIPYQVQKSKLIEKIAELIQTKKIPILGDVRDESADDIRLIIEPRSKNVDP 240 Query: 323 DLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQA 382 ++LM ++ SD+E RF LNMNVL G P+V + +L+ +L HRREVL RRS+ RM+ Sbjct: 241 EVLMGMLYRSSDLEVRFSLNMNVLIDGVTPKVCSMKEVLRAFLDHRREVLQRRSTHRMEK 300 Query: 383 IDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK-----------------------PVMVS 419 ID R+E+L+G ++A+LN+D +I IIR ++ PK P + Sbjct: 301 IDHRLEVLEGFIVAFLNLDRVIDIIRYDEDPKSALMAEDWGKDHVRAMDEASYVPPAPST 360 Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479 +L+E Q DAILN+RLRSLR+LEE ++ E L+ E+ ++ LL + QW+ I ++ Sbjct: 361 ENALSEVQADAILNMRLRSLRRLEEIELLREQSALMEERSGLEDLLENEGTQWDTIIDQL 420 Query: 480 REVKEIFSK-----STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK 534 RE K+ F K ++GRRRT+F E ++ L +AMI++EPITVV S GWIR++ Sbjct: 421 RETKKQFGKDWSLDGKNIGRRRTSFSEAGVIEEVPL-EAMIDREPITVVCSQMGWIRAMT 479 Query: 535 SHSVDLS-ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593 H +DL+ L FK+GD + HA TTDR+L+ ++G+ YT+ A L GRG GE ++L+ Sbjct: 480 GH-IDLNRELKFKDGDGPRFIFHAETTDRLLVFGSNGRFYTVSASTLPGGRGMGEPLRLM 538 Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653 +DL + IV ++ + KLLV SS G+ FIV E +++A TR GK L V + K + Sbjct: 539 VDLPNEVQIVDILIHKAGRKLLVASSAGDGFIVPEDDVLAQTRSGKQVLNVRGDAKAMIC 598 Query: 654 VKVTG--DHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTW 711 VTG D VAVVGENRK+L+F +D++PEM RGKGVRLQ YKDGG+SD I F GL+W Sbjct: 599 APVTGDADAVAVVGENRKVLVFGLDELPEMGRGKGVRLQKYKDGGMSDAITFSRENGLSW 658 Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750 D AGR+ R+E+DL W GKR G + P+GFPR +F Sbjct: 659 QDPAGRT--RTESDLTEWTGKRATAGRMAPRGFPRDNRF 695 >gi|117924909|ref|YP_865526.1| DNA topoisomerase IV subunit A [Magnetococcus sp. MC-1] gi|117608665|gb|ABK44120.1| DNA topoisomerase IV subunit A [Magnetococcus sp. MC-1] Length = 754 Score = 684 bits (1766), Expect = 0.0, Method: Compositional matrix adjust. Identities = 349/737 (47%), Positives = 491/737 (66%), Gaps = 12/737 (1%) Query: 9 SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68 SNT E + +LR LE RYLAYALSTI R++PD+RDG KPVHRRI+ AM + LD Sbjct: 2 SNTF--EQIDPCNLREELESRYLAYALSTIISRSLPDVRDGLKPVHRRILFAMRALRLDP 59 Query: 69 GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128 + +KKSAR+VG+VIGK HPHGDQ+ YD++VRLAQ F RYPL+ GQGNFGNIDGDSAAA Sbjct: 60 NSPYKKSARVVGDVIGKYHPHGDQAAYDAMVRLAQEFAVRYPLVDGQGNFGNIDGDSAAA 119 Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188 RYTEAR+T VA+ +L+ ++ D VDF TY+ EPVV P++FPNLLANG+SGIAVGM+ Sbjct: 120 MRYTEARLTSVAKALLEDLEMDTVDFMPTYDGSMEEPVVLPARFPNLLANGSSGIAVGMS 179 Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248 T++P HNV EI +A L LI P SIE+L++++ PDFPTGGI++ +E Y GRG Sbjct: 180 TNVPPHNVGEILDACLLLISKPNCSIEELMQHLPAPDFPTGGILMADHAERLEVYSEGRG 239 Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308 R+RARW VE++GRG W IVVTEIPYQVQKSRLIE+IA+L+I ++ P L ++RDES E+ Sbjct: 240 SLRLRARWAVEDLGRGLWQIVVTEIPYQVQKSRLIERIAQLVIDRKCPFLTNVRDESDEN 299 Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368 +RIVL P+ R+LDP+L+M +F SD+E+R N+NV+ G P+V+ L GIL+ WL HR Sbjct: 300 LRIVLEPRARTLDPELIMHFLFKHSDLESRASFNLNVIVGGHRPEVLDLKGILRHWLDHR 359 Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQV 428 V RR+S+ ++ I R+ +L+ LI +LNIDE+I II+ D P PV+++RFSL E Q Sbjct: 360 FVVHTRRASYELKKIRERLHLLQAFLIVHLNIDEVIEIIKKNDDPAPVLMARFSLDEIQA 419 Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488 +AILN+RLR+LRKLEE +I+ E++ L A + ++++L K W I E++ ++ F+ Sbjct: 420 EAILNMRLRNLRKLEEMKIRKEMEELQARADLLEAMLADDKIMWKAIRDELKATRKEFAD 479 Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548 RRT C S D + +EKEPI+V++S GW+++ K H V+ L FK Sbjct: 480 V-----RRTEICG-SVEDVHVRPEDFVEKEPISVILSQMGWVKANKGHDVNTEVLRFKGD 533 Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608 D L + +T + +S GK +T+ A NL +G+G GE + + DL+ ++ A Sbjct: 534 DLLLRSFPCYTNQSVSFISQSGKLFTILASNLPAGKGFGEPLTSMFDLDGGDRVLWALPV 593 Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENR 668 D + L+++ G F V+ ++IAN RKGK + + S ++ + V G V + +R Sbjct: 594 DPEQEYLLITRLGQGFRVKGVDLIANQRKGKQLITLKSGDQPLHLHPVKGPWVGSISRSR 653 Query: 669 KLLIFSIDQIPEMSRGKGVRLQSY-KDGGISDVICFKICEGLTWIDSAGRSYNRSENDLL 727 +LLIF I+Q P M++GKGVR+Q D + DV F EG +DS ++ + ++ D Sbjct: 654 RLLIFPIEQFPLMAKGKGVRVQKLGADEVVVDVTTFTDEEGFV-LDSGKKTKHVTDYD-- 710 Query: 728 GWLGKRGGVGSLVPKGF 744 W G R G G+++P GF Sbjct: 711 QWHGNRAGRGAMLPHGF 727 >gi|23011502|ref|ZP_00051841.1| COG0188: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit [Magnetospirillum magnetotacticum MS-1] Length = 623 Score = 634 bits (1635), Expect = e-179, Method: Compositional matrix adjust. Identities = 315/625 (50%), Positives = 441/625 (70%), Gaps = 8/625 (1%) Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189 RYTEA++T++A +++G+DED+VDFR TY+ + EP V PS PNLLANG++GIAVGMAT Sbjct: 2 RYTEAKLTEIAAALMEGLDEDSVDFRPTYDGTEEEPAVMPSAIPNLLANGSAGIAVGMAT 61 Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249 SIP HN+ EIC+A LI P+ +++L+ ++ GPDFPTGG++VE+ +I E+YR G+G Sbjct: 62 SIPPHNLGEICDALDHLIAKPDCDVDELIAHMPGPDFPTGGVLVETSAAISEAYRTGKGS 121 Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309 FRVRA+W VE++ G + IV+TEIPYQVQK++LIEKIAEL+ K++PLL DIRDESAED+ Sbjct: 122 FRVRAKWAVEKLSHGLYQIVITEIPYQVQKAKLIEKIAELLSEKKLPLLADIRDESAEDI 181 Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL---SMGRV-PQVMPLDGILKEWL 365 R+VL P+NR+++ +L+ME +F +D+E+RF LNMNVL S G + P VM L +L+ +L Sbjct: 182 RLVLEPRNRTVEAELVMEQLFRQTDLESRFSLNMNVLAPDSHGHLTPGVMNLKEVLRAFL 241 Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425 HR VL RR+ FR++ I +R+E+L+G L Y ++D++I IIR D+PK ++ F L+E Sbjct: 242 DHRMVVLERRTRFRLEKIAKRLEVLEGFLKVYADLDKVIKIIRFADEPKAELIKTFKLSE 301 Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485 Q +AILN+RLRSL KL+E +IK+E L AEK +++LL ++W IA + E+++ Sbjct: 302 VQAEAILNMRLRSLNKLQELEIKTEHAELSAEKADLEALLADEGRRWTTIAAQNAEIRKA 361 Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545 F +T LG+RRT + A + +A +E+E IT+V+S +GWIR+LK HS AL F Sbjct: 362 FGGATALGKRRTELGDAPSAVVVPI-EAYVEREAITMVLSEKGWIRALKGHSDSPDALKF 420 Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605 KEGD L L A TTD+IL+ +TDG+ YT+ L SGRGHGE ++L+IDL + DI Sbjct: 421 KEGDQLGHLLKAWTTDKILVFATDGRFYTIGGDKLPSGRGHGEPLRLMIDLAGDVDIAAV 480 Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVG 665 V+ KLLV ++ F+VEE+E++A TR GK L EK K + GD VAV+G Sbjct: 481 LVHKPGRKLLVATNSDRGFVVEENEVLAQTRAGKMVLNCGDGEKAKFCLPFEGDAVAVIG 540 Query: 666 ENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSEND 725 ENRKLL+F D+IP M+RG+GV LQ Y+DGG++D+ F + +GLTW + G R+E D Sbjct: 541 ENRKLLVFMADEIPVMTRGRGVILQKYRDGGMADIKVFTLAQGLTW--NLGDRV-RTEAD 597 Query: 726 LLGWLGKRGGVGSLVPKGFPRSGKF 750 L WLGKR VG L P GFPR+ +F Sbjct: 598 LTPWLGKRASVGRLPPTGFPRNNRF 622 >gi|239787276|emb|CAX83754.1| DNA topoisomerase IV subunit A [uncultured bacterium] Length = 765 Score = 634 bits (1634), Expect = e-179, Method: Compositional matrix adjust. Identities = 327/736 (44%), Positives = 468/736 (63%), Gaps = 10/736 (1%) Query: 10 NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69 + E ++ ++R LE RYLAYALSTI R++PD+RDG KPVHRRI+ AM + LD G Sbjct: 2 GAVTAEKIEPAAIRGELESRYLAYALSTIISRSLPDVRDGLKPVHRRILFAMRALRLDPG 61 Query: 70 AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129 + FKKSAR+VG+VIGK HPHGDQ+ YD++VRLAQ F QRYPL+ GQGNFGN+DGD AAA Sbjct: 62 SGFKKSARVVGDVIGKFHPHGDQAAYDAMVRLAQDFAQRYPLVDGQGNFGNVDGDGAAAM 121 Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189 RYTEAR+T VA+ +L+ +D VD TY+ EPVV P++FPNLLANG +GIAVGM+T Sbjct: 122 RYTEARLTPVAQALLEDLDRQTVDLIPTYDGSQEEPVVLPARFPNLLANGATGIAVGMST 181 Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249 +IP HN E+ AAL LI +P+ + +L++++ GPDFPTGG++V E + E Y GRGG Sbjct: 182 AIPPHNAGEVLAAALHLIRHPDCGVAELMKHLPGPDFPTGGVLVAEPEELREVYATGRGG 241 Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309 R+RARW E VG G+W +VVTEIPY VQK RLIE+IA+LI+ ++ P L D+RDES V Sbjct: 242 LRLRARWEQEMVGHGTWRLVVTEIPYHVQKGRLIERIAQLILDRKCPFLSDVRDESDAKV 301 Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369 RIVL P++R LDP+ +M +F SD+E R +N+NV++ P+VM L G+L+ WL HR Sbjct: 302 RIVLEPRSRGLDPEKIMAFLFKNSDLEVRINVNLNVVTAEARPEVMDLKGLLRAWLDHRF 361 Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429 +V RR++ ++ I R+ +L+ L +LNID +IAII+ D P P ++ RF + Q + Sbjct: 362 QVHTRRATHDLERIRERLHLLQAYLTVHLNIDAVIAIIKAHDDPAPALMQRFGMDSEQAE 421 Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489 A+LNLRLR+LR+LEE I+ E+ A ++ ++L W + E++ ++ FS Sbjct: 422 AVLNLRLRALRRLEEMSIRKEMGEKEARAAELSAMLADPTLMWAAVQDEVKRTRKEFSD- 480 Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549 GRR D + +I+KEP+T V+S +GWI++LK H +DL + FKE D Sbjct: 481 ---GRRTRMAGPAPEID--LRPEDLIQKEPLTAVLSRKGWIKALKGHDIDLEKIRFKEED 535 Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609 L+ A+ ++ + L+ GK Y+L L SG+ GE + +L +L+ I+ D Sbjct: 536 GLERAVKGYSHQTVTFLAASGKVYSLLGDRLPSGKRFGEPLTVLFELDPGDRILWMLAVD 595 Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRK 669 + V + G F + +++AN R GK + + ++ V V G VA + R+ Sbjct: 596 PEGEYFVTTRLGQGFRIRGRDLVANQRTGKQVVSLREGDQPLHVHPVRGAAVAAISHGRR 655 Query: 670 LLIFSIDQIPEMSRGKGVRLQSYKDG-GISDVICFKICEGLTWIDSAGRSYNRSENDLLG 728 LLI +++ P + RGKGVR+Q+ G G+ D + F GL +DS R+ +E D Sbjct: 656 LLICRLEEFPLLGRGKGVRIQNLGRGEGLVDAMTFDPQAGLV-LDSGKRTRQLTELD--K 712 Query: 729 WLGKRGGVGSLVPKGF 744 W G RG G+++P GF Sbjct: 713 WQGTRGSRGAMLPHGF 728 >gi|85707863|ref|ZP_01038929.1| DNA topoisomerase IV subunit A [Erythrobacter sp. NAP1] gi|85689397|gb|EAQ29400.1| DNA topoisomerase IV subunit A [Erythrobacter sp. NAP1] Length = 622 Score = 605 bits (1561), Expect = e-171, Method: Compositional matrix adjust. Identities = 299/623 (47%), Positives = 427/623 (68%), Gaps = 18/623 (2%) Query: 144 LQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAA 203 ++G+D VDF TYN E+ EP + P FPNLL NG SGIAVGMAT+IPSHNV E+ +A Sbjct: 1 MEGLDAGTVDFIPTYNGEEEEPELMPGLFPNLLGNGASGIAVGMATNIPSHNVAEVIDAT 60 Query: 204 LALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW------- 256 L LIDNP + E+L+E + GPDF TGG +V+S E + E+YR GRG FR+R + Sbjct: 61 LELIDNPHVEHERLMELMPGPDFATGGQLVDSAEVLSEAYRTGRGSFRLRGVFHAPEAEK 120 Query: 257 ------CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310 +E +G G W +V++EIPYQV K +LIE+IA+ I K++P+LED+RDES E +R Sbjct: 121 TEDIEAGIERLGGGQWQLVISEIPYQVAKGKLIEQIAQAIADKKLPILEDVRDESDESIR 180 Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370 IVL P++R++DPDLL ESIF L+DMETRF LNMNVL R P VM L +L+ W A + E Sbjct: 181 IVLVPRSRNVDPDLLKESIFKLTDMETRFGLNMNVLDATRTPMVMGLKELLQNWTAAQIE 240 Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDA 430 +L RR+ +R+ I+RR+E++ G ++A+LN+D +I IIR ED+PK VM++ FSLT+ Q +A Sbjct: 241 ILQRRTRYRLGQIERRLELVDGYIVAFLNLDRVIEIIRYEDEPKAVMMAEFSLTDRQAEA 300 Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490 ILN+RLRSLRKLEE ++K E LLAE+E+++ LL S +Q ++ ++R +++ +++ T Sbjct: 301 ILNMRLRSLRKLEEMELKQEKSELLAEQEELNKLLESPARQRTRLKKDLRALRKDYAEDT 360 Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA-LHFKEGD 549 LG RRT E + A + ++ AMIEKEP+TV++S +GWIR+ K H VDL+ +KEGD Sbjct: 361 ALGARRTRIEEAAPAVEFSM-DAMIEKEPVTVILSQKGWIRAAKGH-VDLAQEFKYKEGD 418 Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609 +L LHA TTD++L+ +DG+ YTL A L RG GE ++ +IDL I V+ Sbjct: 419 ALAFILHAQTTDKLLIAGSDGRFYTLGADKLPGARGFGEPVRTMIDLPAETQIAAMMVHK 478 Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV--TGDHVAVVGEN 667 KLL+ SS G FI E E++A T+KGK + + + K++++ +V DHVA VGEN Sbjct: 479 EGGKLLLASSIGKGFIAETKELLAETKKGKQVVNLKGDAKLQVIREVPENHDHVAAVGEN 538 Query: 668 RKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLL 727 RKL++F+++++P M+RG+GV LQ Y+DGG+SD F + +GL+W R+END+ Sbjct: 539 RKLIVFNLEEMPVMARGQGVMLQRYRDGGLSDATTFVLEDGLSWQMGGSGERTRTENDIW 598 Query: 728 GWLGKRGGVGSLVPKGFPRSGKF 750 W RG G L P+GFP++ +F Sbjct: 599 QWKVARGAAGRLPPQGFPKNNRF 621 >gi|262277165|ref|ZP_06054958.1| DNA gyrase subunit A [alpha proteobacterium HIMB114] gi|262224268|gb|EEY74727.1| DNA gyrase subunit A [alpha proteobacterium HIMB114] Length = 746 Score = 602 bits (1551), Expect = e-170, Method: Compositional matrix adjust. Identities = 319/739 (43%), Positives = 464/739 (62%), Gaps = 24/739 (3%) Query: 13 VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72 + +N+ L+ ++YLAYALSTI +RA+PD+RDG KPVHRR+I+AM + L + F Sbjct: 1 MSKNIVKDELQNQFAKKYLAYALSTITQRALPDVRDGLKPVHRRLIYAMYLLNLSPKSQF 60 Query: 73 KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132 KKSAR+VG+VIGK HPHGDQSVYD+LVRLAQ F YPL++GQGNFGN+DGD+AAA RYT Sbjct: 61 KKSARVVGDVIGKFHPHGDQSVYDALVRLAQDFSTHYPLVNGQGNFGNVDGDNAAAMRYT 120 Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192 E ++T+ +E +L ++E+ V+F+ TY+ E EP + PS+FPN+LANG+SGIAVGMATSIP Sbjct: 121 ETKLTKTSEYLLADIEEETVNFKKTYDGELDEPEILPSQFPNILANGSSGIAVGMATSIP 180 Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252 HNVQEICEA + L DNP SI+ LL++I GPDFPTGGI+ E ++ I ++Y+ GRG F + Sbjct: 181 PHNVQEICEALIYLNDNPNCSIKDLLKFIKGPDFPTGGILNEDKKEIFKAYKTGRGFFEI 240 Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312 ++++ VE++GRG + I VTEIPY V KS+LIEK+A +II K+ LL+ + DES E +RIV Sbjct: 241 KSKYKVEDLGRGLYQIAVTEIPYSVNKSKLIEKLAGIIINKKNKLLDHVSDESDEKIRIV 300 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 L PKNR+++P+ LM S+F S+++ + LNMNVL+ P+VM L ILK L HR +L Sbjct: 301 LRPKNRNVNPEDLMNSLFEQSELKNKIFLNMNVLNEKNEPKVMNLKEILKSLLKHRYIIL 360 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAIL 432 + +F+++ I RR+EILKG +I Y N+++II IIRN PK ++ ++ T QVD+IL Sbjct: 361 NNKINFKLKKIKRRLEILKGFIIVYKNLNQIIKIIRNSKDPKKELIKKYKFTLIQVDSIL 420 Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492 +RLR+L+K+EE IK E NL EK+++ +LNS Q +I E EV F ++ Sbjct: 421 EMRLRNLKKIEELDIKKEFKNLELEKKRLSKILNSKTLQRKEINNEYTEVINEFGDNSTY 480 Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLK 552 G RR+ + + L+ + E I V + N +++S K + S K D + Sbjct: 481 GPRRSILEKFVKFTDDELESKLEVIENINVSLINEKFLKS-KKGTYKRSE---KNSDDVS 536 Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612 + ++ T+D+I LLS GK+Y L NL G G I + L + IV FVY Sbjct: 537 LIINCKTSDQICLLSNIGKSYILNCSNLKFGSTKGFLISSYLKLKDEEKIVDLFVYKEKQ 596 Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS-----------SEEKMKLVVKVTGDHV 661 ++++ S G F V+ ++ N + GK + ++EK K +V D++ Sbjct: 597 EIILSSQNGYGFFVKSEDLFTNKKSGKKIFNIKKNDQFYGSCLINKEKDKFIVLFLKDNL 656 Query: 662 AVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNR 721 KL+IF + ++P + +G GV L +K G I + L+ ID + Sbjct: 657 KY-----KLIIFELKEVPYLQKGSGVIL--FKTKGFKLNNFCSIDDNLSLIDIDSKKIEL 709 Query: 722 SENDLLGWLGKRGGVGSLV 740 +L +L KRG G ++ Sbjct: 710 G--NLKSFLSKRGKSGKVI 726 >gi|218515928|ref|ZP_03512768.1| DNA topoisomerase IV subunit A [Rhizobium etli 8C-3] Length = 399 Score = 586 bits (1510), Expect = e-165, Method: Compositional matrix adjust. Identities = 278/399 (69%), Positives = 350/399 (87%) Query: 65 GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124 G + F+K A+IVGEV+G HPHGDQS+YD+L RLAQ F QRY L++GQGNFGNIDGD Sbjct: 1 GAETDIGFRKCAKIVGEVMGNYHPHGDQSIYDALARLAQDFSQRYTLVNGQGNFGNIDGD 60 Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184 S AA RYTE++MT V+EL+L+G+D+DAVDFRDTY+E +SEP+V P FPNLLANG+SGIA Sbjct: 61 SPAAMRYTESKMTAVSELLLEGIDQDAVDFRDTYDESNSEPIVLPGAFPNLLANGSSGIA 120 Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244 VGMATSIPSHN E+C+AAL LI +P+ ++EKL+E+I GPDFPTGGII++SR+SI+ESYR Sbjct: 121 VGMATSIPSHNAHELCDAALHLIKHPDATVEKLVEFIPGPDFPTGGIIIDSRDSIIESYR 180 Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304 GRGGFRVRA+W E++GRG + IVVTEIP+QVQKSRLIEKIAEL+IA+++PLLEDIRDE Sbjct: 181 TGRGGFRVRAKWQTEDLGRGGYQIVVTEIPFQVQKSRLIEKIAELLIARKLPLLEDIRDE 240 Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364 SAED+RIVL PK+R++DP +LMES+F L+++E+RFPLNMNVLSMGR+P+VM L+ +LKEW Sbjct: 241 SAEDIRIVLVPKSRTVDPTILMESMFKLTELESRFPLNMNVLSMGRIPKVMALNEVLKEW 300 Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLT 424 L HRREVL RRS FR+ AID+R+EIL GLLIAYLNIDE+I IIR ED+PKPVM++R+ LT Sbjct: 301 LDHRREVLQRRSRFRLAAIDKRLEILGGLLIAYLNIDEVIRIIREEDEPKPVMMARWDLT 360 Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDS 463 +NQV+AILN+RLR+LRKLEE++I+ E D L EK +I++ Sbjct: 361 DNQVEAILNMRLRALRKLEEFEIRKEFDELTKEKGEIEA 399 >gi|254718872|ref|ZP_05180683.1| DNA topoisomerase IV subunit A [Brucella sp. 83/13] Length = 465 Score = 583 bits (1503), Expect = e-164, Method: Compositional matrix adjust. Identities = 288/454 (63%), Positives = 361/454 (79%), Gaps = 22/454 (4%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 EE+++ V L+ ALEERYLAYALSTI RA+PD+RDG KPVHRRI+HAM + L+ A+ Sbjct: 12 EEHIERVDLKSALEERYLAYALSTIMHRALPDVRDGLKPVHRRIMHAMRLLRLNPDQAYA 71 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 K ARIVG+V+GK HPHGD S+YD+LVRLAQ F RYPL+ GQGNFGNIDGD+AAA RYTE Sbjct: 72 KCARIVGDVMGKFHPHGDASIYDALVRLAQDFAVRYPLVDGQGNFGNIDGDNAAAMRYTE 131 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 ARMT+VA L+L+G++E+A+DFR TYNEED EP+V P FPNLLANG++GIAVGMAT+IP Sbjct: 132 ARMTEVATLLLEGINENAIDFRPTYNEEDEEPIVLPGAFPNLLANGSAGIAVGMATNIPP 191 Query: 194 HNVQEICEAALALIDNPEISIEKLLEY----------------------IIGPDFPTGGI 231 HNV E+C +AL LI++P+ +E+L+ + GPDFPTGGI Sbjct: 192 HNVAELCSSALYLINHPDAPVEELVTSPEQWAEIEQESKTDPAALLKCKVRGPDFPTGGI 251 Query: 232 IVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELII 291 +VE +I+E+YR GRG FRVRARW EE RG+W IVVTEIPYQVQKSRLIEKIAEL++ Sbjct: 252 LVEEHGNILEAYRTGRGAFRVRARWHKEEGNRGTWVIVVTEIPYQVQKSRLIEKIAELLL 311 Query: 292 AKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRV 351 AK++PLL+DIRDESAED+RIVL PKNR++DP+LLMES+F L+++E+R LNMNVLS G+V Sbjct: 312 AKKLPLLDDIRDESAEDIRIVLEPKNRTVDPELLMESLFKLTELESRVSLNMNVLSHGKV 371 Query: 352 PQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED 411 P V+ L +L+EWL HR+EVL RRS FR+ I+RR+EIL G LIAYLN+DE+I IIR ED Sbjct: 372 PNVLSLGAVLREWLEHRKEVLVRRSQFRLVEIERRLEILGGFLIAYLNLDEVIRIIREED 431 Query: 412 KPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEY 445 +PK ++ F LT+ Q ++ILN+RLRSLRKLEE+ Sbjct: 432 EPKQELMRAFELTDVQAESILNMRLRSLRKLEEF 465 >gi|265983858|ref|ZP_06096593.1| DNA topoisomerase IV subunit A [Brucella sp. 83/13] gi|264662450|gb|EEZ32711.1| DNA topoisomerase IV subunit A [Brucella sp. 83/13] Length = 470 Score = 583 bits (1503), Expect = e-164, Method: Compositional matrix adjust. Identities = 288/454 (63%), Positives = 361/454 (79%), Gaps = 22/454 (4%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 EE+++ V L+ ALEERYLAYALSTI RA+PD+RDG KPVHRRI+HAM + L+ A+ Sbjct: 17 EEHIERVDLKSALEERYLAYALSTIMHRALPDVRDGLKPVHRRIMHAMRLLRLNPDQAYA 76 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 K ARIVG+V+GK HPHGD S+YD+LVRLAQ F RYPL+ GQGNFGNIDGD+AAA RYTE Sbjct: 77 KCARIVGDVMGKFHPHGDASIYDALVRLAQDFAVRYPLVDGQGNFGNIDGDNAAAMRYTE 136 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 ARMT+VA L+L+G++E+A+DFR TYNEED EP+V P FPNLLANG++GIAVGMAT+IP Sbjct: 137 ARMTEVATLLLEGINENAIDFRPTYNEEDEEPIVLPGAFPNLLANGSAGIAVGMATNIPP 196 Query: 194 HNVQEICEAALALIDNPEISIEKLLEY----------------------IIGPDFPTGGI 231 HNV E+C +AL LI++P+ +E+L+ + GPDFPTGGI Sbjct: 197 HNVAELCSSALYLINHPDAPVEELVTSPEQWAEIEQESKTDPAALLKCKVRGPDFPTGGI 256 Query: 232 IVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELII 291 +VE +I+E+YR GRG FRVRARW EE RG+W IVVTEIPYQVQKSRLIEKIAEL++ Sbjct: 257 LVEEHGNILEAYRTGRGAFRVRARWHKEEGNRGTWVIVVTEIPYQVQKSRLIEKIAELLL 316 Query: 292 AKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRV 351 AK++PLL+DIRDESAED+RIVL PKNR++DP+LLMES+F L+++E+R LNMNVLS G+V Sbjct: 317 AKKLPLLDDIRDESAEDIRIVLEPKNRTVDPELLMESLFKLTELESRVSLNMNVLSHGKV 376 Query: 352 PQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED 411 P V+ L +L+EWL HR+EVL RRS FR+ I+RR+EIL G LIAYLN+DE+I IIR ED Sbjct: 377 PNVLSLGAVLREWLEHRKEVLVRRSQFRLVEIERRLEILGGFLIAYLNLDEVIRIIREED 436 Query: 412 KPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEY 445 +PK ++ F LT+ Q ++ILN+RLRSLRKLEE+ Sbjct: 437 EPKQELMRAFELTDVQAESILNMRLRSLRKLEEF 470 >gi|330814139|ref|YP_004358378.1| topoisomerase IV subunit A [Candidatus Pelagibacter sp. IMCC9063] gi|327487234|gb|AEA81639.1| topoisomerase IV subunit A [Candidatus Pelagibacter sp. IMCC9063] Length = 752 Score = 576 bits (1484), Expect = e-162, Method: Compositional matrix adjust. Identities = 301/687 (43%), Positives = 463/687 (67%), Gaps = 12/687 (1%) Query: 8 NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67 N N + EE +K +FA ++YLAYALSTI +RA+PD+RDG KPVHRR+I+AM + L Sbjct: 4 NKNNITEEQLKN---QFA--KKYLAYALSTITQRALPDVRDGLKPVHRRLIYAMHLLDLT 58 Query: 68 FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAA 127 ++FKKSAR+VG+VIGK HPHGDQSVYD+LVRLAQ F +YPLI+GQGNFGNIDGD+AA Sbjct: 59 SKSSFKKSARVVGDVIGKFHPHGDQSVYDALVRLAQDFSTKYPLINGQGNFGNIDGDNAA 118 Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187 A RYTE ++T+V+E +L+ + + V+FR TY+ E SEP V P+ FPNLLANG+SGIAVGM Sbjct: 119 AMRYTETKLTEVSEFLLKDIGSETVNFRKTYDGELSEPTVLPAAFPNLLANGSSGIAVGM 178 Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247 AT+IP HN++EIC + + L ++ + SI LL+ + GPDFPTGGI+ ++ ++++Y GR Sbjct: 179 ATNIPPHNLEEICSSIIHLNNHRDCSIRDLLKILKGPDFPTGGILNLDQKEMIKTYTTGR 238 Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307 G F +RA++ VE++ +G + + +++IPYQV KS+LIEKIA+LII K+ L++++ DES E Sbjct: 239 GFFELRAKYKVEDLSKGQYQVSISQIPYQVNKSKLIEKIADLIINKKNKLIDNVIDESDE 298 Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367 ++R+V+ PKNR++DP +LM S++ +D+E +F LNMNVL+ P+VM + IL +L H Sbjct: 299 NIRVVIRPKNRNIDPVVLMNSLYQQTDLEIKFFLNMNVLNHKLEPKVMSIKEILYSFLKH 358 Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQ 427 R +L ++S F + I+ R+EILKG LIA+ N++ II IIRN + PK +V ++ TENQ Sbjct: 359 RYIILEKKSKFALNKINIRLEILKGFLIAFKNLNNIIKIIRNSNNPKAELVKKYRFTENQ 418 Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487 V+AIL+++LRSLRK+EE +IK E LL +K+ + LL+S Q +I E+ ++ F Sbjct: 419 VNAILDMKLRSLRKIEEKEIKEENSKLLNKKKLLMKLLSSKSLQKKEINKEMEDLILQFG 478 Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKE 547 ++ G R+T + +R + + L + + +PIT ++ G++++ +SV F E Sbjct: 479 NNSAYGLRKTVIEKFNRIESSELDEELKSTDPITAILLKTGFLKAKIGYSVCKVNADFSE 538 Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV 607 + L + + +D+ + LS+ GK+YTL NL+ G G+ L N++IV +F+ Sbjct: 539 NEHLYV--NGRKSDKFIFLSSFGKSYTLDGENLVFGSQKGKPFSSYFSLKENEEIVDSFL 596 Query: 608 YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD--HVAVVG 665 Y + K+L+ SS G F + +I+N + GK + + + V++ D ++ ++ Sbjct: 597 YKNNEKILLCSSNGYGFFINSDNLISNKKSGKKVFNIKKNDFLHSSVQIHKDQKYIFLLT 656 Query: 666 ENRK---LLIFSIDQIPEMSRGKGVRL 689 +N+K + S+ IP +G G+ L Sbjct: 657 KNKKENRASVISMKDIPTQEKGVGIIL 683 >gi|326794771|ref|YP_004312591.1| DNA topoisomerase IV, subunit alpha [Marinomonas mediterranea MMB-1] gi|326545535|gb|ADZ90755.1| DNA topoisomerase IV, A subunit [Marinomonas mediterranea MMB-1] Length = 756 Score = 566 bits (1459), Expect = e-159, Method: Compositional matrix adjust. Identities = 300/744 (40%), Positives = 465/744 (62%), Gaps = 23/744 (3%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 E+ + +SL+ E+ YL Y++ I +RA+P + DG KPV RRI++AMSE+GL A +KK Sbjct: 8 ESNETLSLKEYTEKAYLNYSMYVILDRALPHIGDGLKPVQRRIVYAMSELGLKATAKYKK 67 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTE 133 SAR VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S AA RYTE Sbjct: 68 SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 127 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 +R+++ ++++L+ V + VD+ ++ EP V P++ PNLL NGT+GIAVGMAT +P Sbjct: 128 SRLSKYSDVLLREVSQGTVDWVPNFDGTLKEPSVLPARLPNLLLNGTTGIAVGMATDVPP 187 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN++EI A + L++NP+ +++LLE++ GPDFPTGG I+ SR + + Y LG+G + R Sbjct: 188 HNLREIGNACVHLLNNPKAELDELLEHVQGPDFPTGGEIITSRSDLRKMYELGKGQVKAR 247 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRI 311 AR+ +E+ IVV E+P+QV S+++E++A + AK++P++ D+RDES + R Sbjct: 248 ARYRIED-----GEIVVYELPHQVSGSKVLEQVAAQMQAKKLPMVVDLRDESDHENPTRF 302 Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371 V+ PK+ +D + +M +F +D+E + +NMNV+ + +PQV L +KEWL R +V Sbjct: 303 VIVPKSSRVDTESVMTHLFATTDLEKSYRVNMNVIGLDGLPQVKGLRAFIKEWLTFRIDV 362 Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431 + +R FR+ + R+ IL+GLL+A+LNIDE+I IIRNEDKPK ++ RF L+++Q +AI Sbjct: 363 VRKRLQFRLDKVLNRLHILEGLLVAFLNIDEVIDIIRNEDKPKEELIKRFGLSDSQAEAI 422 Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491 L L+LR L KLEE +IKSE D L E+E++++LL S ++ I EI+E E F Sbjct: 423 LELKLRHLAKLEEMRIKSEQDELNKEREQLEALLGSDRKLKKLITEEIKEAIEDFGDE-- 480 Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551 RRT E A +A ++ ++ +P+TVV+S +GWIR+ K H +D++ L +K GD Sbjct: 481 ---RRTPLIERKEA-QAFSEEDLLSNDPVTVVLSKQGWIRAAKGHDIDVTGLSYKSGDEF 536 Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611 ++ T ++L++++G+ Y+L A L S RG GE I I L IV A + Sbjct: 537 LLSAKGRTNQTLVLIASNGRTYSLKAHTLPSARGQGEPITGRISLEKGATIVAAVLDSEE 596 Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV---TGDHVAVVGENR 668 L+ S G F+ + ++ A + GK L + S ++ VKV GD V VV Sbjct: 597 AHYLLASDAGYGFVAQLKDLYAKNKAGKATLSLPSNAEVISPVKVESPEGDKVVVVSNEG 656 Query: 669 KLLIFSIDQIPEMSRGKGVRLQSYKDGGISD----VICFKICEG--LTWIDSAGRSYNRS 722 ++L FS+ +P+M++GKG ++ S +D VI + L S R + + Sbjct: 657 RMLAFSVKSLPQMAKGKGNKMLSIPSSRAADREELVIAMATIQSNDLLVAHSGKRFLSLA 716 Query: 723 ENDLLGWLGKRGGVGSLVPKGFPR 746 E DL ++G+RG G +P+GF R Sbjct: 717 EKDLQEYVGERGRRGLKLPRGFQR 740 >gi|152996848|ref|YP_001341683.1| DNA topoisomerase IV subunit A [Marinomonas sp. MWYL1] gi|150837772|gb|ABR71748.1| DNA topoisomerase IV, A subunit [Marinomonas sp. MWYL1] Length = 765 Score = 558 bits (1437), Expect = e-156, Method: Compositional matrix adjust. Identities = 300/747 (40%), Positives = 464/747 (62%), Gaps = 29/747 (3%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 E+ + +SL+ E+ YL Y++ I +RA+P + DG KPV RRII+AMSE+GL A +KK Sbjct: 8 ESNETLSLKDYTEKAYLNYSMYVILDRALPHIGDGLKPVQRRIIYAMSELGLKATAKYKK 67 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTE 133 SAR VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S AA RYTE Sbjct: 68 SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 127 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 +R+++ A+++L+ V + VD+ ++ EP V PS+ PNLL NGT+GIAVGMAT IP Sbjct: 128 SRLSKYADVLLREVSQGTVDWTPNFDGTLQEPSVLPSRLPNLLLNGTTGIAVGMATDIPP 187 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN++EI A + L++NP ++ LL ++ GPDFPTGG I+ + IV Y G+G + R Sbjct: 188 HNLREIGGACIHLLNNPNAELDDLLNFVQGPDFPTGGEIITPKSDIVRLYETGKGQIKAR 247 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRI 311 AR+ +EE IVV E+P+QV S+++E+IA + AK++P++ D+RDES + R+ Sbjct: 248 ARFTIEE-----GEIVVNELPHQVSGSKILEQIAAQMQAKKLPMVVDLRDESDHENPTRL 302 Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371 V+ PK+ +D D +M +F +D+E + +NMNV+ + +PQV PL L EWL R +V Sbjct: 303 VIVPKSNRVDIDSVMTHLFATTDLEKSYRVNMNVIGLDGLPQVKPLKNFLSEWLRFRIDV 362 Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431 + RR FR+ ++ R+ IL+GLLIAYLNIDE+I IIR E+KPK +++RF L++ Q ++I Sbjct: 363 VRRRLQFRLDKVNNRLHILEGLLIAYLNIDEVIEIIRTEEKPKVELMARFGLSDMQAESI 422 Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491 L L+LR L KLEE +IK E D L E+++++ LL+S ++ I EI+E + D Sbjct: 423 LELKLRHLAKLEEMRIKGEQDELEKERKQLEGLLSSDRKLKKLITEEIQEAID------D 476 Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551 G R T + +A ++ ++ +PITVVIS +GWIR+ K H +D++ L +K GD Sbjct: 477 FGDDRRTPIVARKEAQAFSEEDLLSNDPITVVISKQGWIRAAKGHDIDVNGLSYKSGDEF 536 Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611 ++ + ++LL+++G+ Y++ A L S RG GE I I L + IV+A + + Sbjct: 537 LVSTKGRSNQTLVLLASNGRTYSIKAHTLPSARGQGEPITGRISLEKDATIVSAVLDNEE 596 Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV----KVTGDHVAVVGEN 667 L+ S G F+ + ++ A + GK L + ++ V V+G VA+ E Sbjct: 597 AHYLIASDAGYGFVAQLKDLYAKNKAGKATLSLPKGARVMAPVPVQDPVSGRVVAISNEG 656 Query: 668 RKLLIFSIDQIPEMSRGKGVRLQSYKDGGISD-------VICFKICEGLTWIDSAGRSY- 719 R +L F + +P+M++GKG ++ S +D + C + + LT AG+ + Sbjct: 657 R-MLAFDVASLPQMAKGKGNKMLSIPSSRAADREELVIALACVQPNDLLTAY--AGKRFI 713 Query: 720 NRSENDLLGWLGKRGGVGSLVPKGFPR 746 + +E DL +LG+RG G +P+GF R Sbjct: 714 SFTEKDLEEYLGERGRRGLKLPRGFQR 740 >gi|269137555|ref|YP_003294255.1| DNA topoisomerase IV subunit A [Edwardsiella tarda EIB202] gi|267983215|gb|ACY83044.1| DNA topoisomerase IV subunit A [Edwardsiella tarda EIB202] gi|304557628|gb|ADM40292.1| Topoisomerase IV subunit A [Edwardsiella tarda FL6-60] Length = 758 Score = 542 bits (1396), Expect = e-151, Method: Compositional matrix adjust. Identities = 287/747 (38%), Positives = 453/747 (60%), Gaps = 24/747 (3%) Query: 12 LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71 L +N + V+L E+ YL Y++ I +RA+P + DG KPV RRI++AMSE+GL A Sbjct: 4 LTHDNSERVALHAFTEDAYLQYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLSASAK 63 Query: 72 FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYR 130 FKKSAR VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S AA R Sbjct: 64 FKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMR 123 Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190 YTE+R+++ AE++L + + VD+ ++ EP P++ PN+L NGT+GIAVGMAT Sbjct: 124 YTESRLSRYAEILLSELGQGTVDYVANFDGTLQEPKFLPARLPNILLNGTTGIAVGMATD 183 Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250 IP HN +E+ A +AL+DNP+ S++ LL +I GPDFPT I+ R+ I + YR GRG Sbjct: 184 IPPHNAREVAAALVALLDNPQSSLDDLLTHIQGPDFPTEAEIITPRDEIRKIYRTGRGSV 243 Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-- 308 R+RA W EE IV++ +P+Q ++++E+IA + AK++P+++D+RDES + Sbjct: 244 RMRAVWRKEESE-----IVISALPHQTSGAKVLEQIASQMRAKKLPMVDDLRDESDHENP 298 Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368 R+V+ P++ +D D LM +F +D+E + +NMN++ + R P V L IL EWL++R Sbjct: 299 TRLVIVPRSNRVDLDQLMNHLFATTDLEKSYRINMNMIGLDRRPAVKDLREILSEWLSYR 358 Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQV 428 RE + RR ++R++ + +R+ IL+GLL A+LNIDE+I IIR+ED+PKPV+V+RF L++ Q Sbjct: 359 RETVRRRLNYRLEKVLKRLHILEGLLCAFLNIDEVIHIIRSEDEPKPVLVARFGLSDTQA 418 Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488 +AIL L+LR L +LEE +I+ E D L E++++ +LL S ++ I EI E + Sbjct: 419 EAILELKLRHLARLEEVKIRGEQDALAQERDRLQTLLASERKLGTLIKKEIMADAETYGD 478 Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548 + RR+ E S A +A + + EP+T+V+S GW+RS K H +D S L++K G Sbjct: 479 A-----RRSPLQERSEA-RAMSEHDFVPSEPVTIVLSEGGWVRSAKGHDIDPSGLNYKAG 532 Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608 D+ + A + ++ + + G++Y L L S RG GE + + I + Sbjct: 533 DAFRAAARGKSNQPVVFIDSSGRSYALDPLTLPSARGQGEPLTGKLTPPPGATIEHVLMA 592 Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH--VAVVGE 666 KLL+ S G F+ S+++A R GK L + K+ +++ GD + + E Sbjct: 593 ADNQKLLMASDAGYGFVCTFSDLVARNRAGKAMLTLPENAKVLTPLEINGDDDMLLAITE 652 Query: 667 NRKLLIFSIDQIPEMSRGKG---VRLQSYKDGGISDVICFKIC----EGLTWIDSAGRSY 719 ++L+F + +P++S+GKG V + + + D + + + LT + R Sbjct: 653 AGRMLMFPVHDLPQLSKGKGNKIVSIPAAQAAAGEDTLKWLLVLAPQTSLT-LHVGKRKL 711 Query: 720 NRSENDLLGWLGKRGGVGSLVPKGFPR 746 DL + +RG G+L+P+G R Sbjct: 712 VMKPQDLQKFRAERGRKGTLLPRGLQR 738 >gi|294634296|ref|ZP_06712837.1| DNA topoisomerase IV, A subunit [Edwardsiella tarda ATCC 23685] gi|291092289|gb|EFE24850.1| DNA topoisomerase IV, A subunit [Edwardsiella tarda ATCC 23685] Length = 758 Score = 540 bits (1390), Expect = e-151, Method: Compositional matrix adjust. Identities = 282/746 (37%), Positives = 453/746 (60%), Gaps = 22/746 (2%) Query: 12 LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71 L +N + V+LR E+ YL Y++ I +RA+P + DG KPV RRI++AMSE+GL+ A Sbjct: 4 LTHDNSERVALRAFTEDAYLQYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAK 63 Query: 72 FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYR 130 FKKSAR VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S AA R Sbjct: 64 FKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMR 123 Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190 YTE+R+++ AE++L + + V++ ++ EP P++ PN+L NGT+GIAVGMAT Sbjct: 124 YTESRLSRYAEVLLSELGQGTVEYTANFDGTLQEPKYLPARLPNILLNGTTGIAVGMATD 183 Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250 IP HN +E+ A +AL+DNP+ S++ LL +I GPDFPT I+ R+ I + YR GRG Sbjct: 184 IPPHNAREVANALVALLDNPDSSLDDLLTHIQGPDFPTEAEIITPRDEIRKIYRTGRGSV 243 Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-- 308 R+RA W EE IV++ +P+Q ++++E+IA + +K++P++ED+RDES + Sbjct: 244 RMRAVWRKEE-----GEIVISALPHQTSGAKVLEQIASQMRSKKLPMVEDLRDESDHENP 298 Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368 R+V+ P++ +D D +M +F +D+E + +N+N++ + R P V L IL EWL++R Sbjct: 299 TRLVIVPRSNRVDFDQVMNHLFATTDLEKSYRINLNMIGLDRRPAVKDLREILTEWLSYR 358 Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQV 428 RE + RR ++R++ + +R+ IL+GLLIA+LNIDE+I +IR ED+PKPV+V+RF L+E Q Sbjct: 359 RETVRRRLNYRLEKVLKRLHILEGLLIAFLNIDEVIHLIRTEDEPKPVLVARFGLSETQA 418 Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488 +AIL L+LR L +LEE +I+ E D L E++++ +LL S + ++A I+ KEI + Sbjct: 419 EAILELKLRQLARLEEMKIRGEQDELAQERDRLQALLASER----KLATLIK--KEIIAD 472 Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548 + + G R + KA + + EP+T+V+S GW+RS K H +D S L++K G Sbjct: 473 AQNYGDARRSPLHQRAEAKAMSEHDFVPSEPVTIVLSESGWVRSAKGHDIDPSGLNYKAG 532 Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608 DS + A + ++ + + G++Y L L S RG GE + + I + Sbjct: 533 DSFRAAARGKSNQPVVFIDSTGRSYALDPLTLPSARGQGEPLTGKLTPPPGATIEHVLMA 592 Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH--VAVVGE 666 KLL+ S G F+ S+++A R GK L + K+ + + GD + + + Sbjct: 593 ADNQKLLMASDAGYGFVCTFSDLVARNRAGKAMLTLPENAKVLAPLAIHGDDDMLLAITQ 652 Query: 667 NRKLLIFSIDQIPEMSRGKG---VRLQSYKDGGISDVICFKIC---EGLTWIDSAGRSYN 720 ++L+F + +P++S+GKG V + + + D + + + + + R Sbjct: 653 AGRMLMFPVHDLPQLSKGKGNKIVSIPAAQAAAGEDTLKWLLVLAPQTTLTLHVGKRKLV 712 Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPR 746 DL + +RG G+ +P+G R Sbjct: 713 MKPQDLQKFRAERGRKGTQLPRGLQR 738 >gi|238918167|ref|YP_002931681.1| DNA topoisomerase IV subunit A [Edwardsiella ictaluri 93-146] gi|238867735|gb|ACR67446.1| DNA topoisomerase IV, A subunit, putative [Edwardsiella ictaluri 93-146] Length = 760 Score = 538 bits (1387), Expect = e-150, Method: Compositional matrix adjust. Identities = 286/747 (38%), Positives = 451/747 (60%), Gaps = 24/747 (3%) Query: 12 LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71 L +N + V+L E+ YL Y++ I +RA+P + DG KPV RRI++AMSE+GL A Sbjct: 4 LTHDNSERVALHAFTEDAYLQYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLSASAK 63 Query: 72 FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYR 130 FKKSAR VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S AA R Sbjct: 64 FKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMR 123 Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190 YTE+R+++ AE++L + + VD+ ++ EP P++ PN+L NGT+GIAVGMAT Sbjct: 124 YTESRLSRYAEILLSELGQGTVDYVANFDGTLQEPKFLPARLPNILLNGTTGIAVGMATD 183 Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250 IP HN +E+ A +AL+DNP+ S++ LL +I GPDFPT I+ R+ I + YR GRG Sbjct: 184 IPPHNAREVAAALVALLDNPQSSLDDLLTHIQGPDFPTEAEIITPRDEIHKIYRTGRGSV 243 Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-- 308 R+RA W EE IV++ +P+Q ++++E+IA + AK++P+++D+RDES + Sbjct: 244 RMRAVWRKEE-----GEIVISALPHQTSGAKVLEQIASQMRAKKLPMVDDLRDESDHENP 298 Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368 R+V+ P++ +D D LM +F +D+E + +NMN++ + R P V L IL EWL++R Sbjct: 299 TRLVIVPRSNRVDLDQLMNHLFATTDLEKSYRINMNMIGLDRRPAVKDLREILSEWLSYR 358 Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQV 428 RE + RR ++R++ + +R+ IL GLL A+LNIDE+I IIR+ED+PKPV+V+RF L++ Q Sbjct: 359 RETVRRRLNYRLEKVLKRLHILDGLLCAFLNIDEVIHIIRSEDEPKPVLVARFGLSDTQA 418 Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488 +AIL L+LR L +LEE +I+ E D L E++++ +LL S ++ I EI E + Sbjct: 419 EAILELKLRHLARLEEVKIRGEQDELAQERDRLQTLLASERKLGTLIKKEIMADAETYGD 478 Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548 + RR+ E S A +A + + EP+T+V+S GW+RS K H +D S L++K G Sbjct: 479 A-----RRSPLQERSEA-RAMSEHDFVPNEPVTIVLSEGGWVRSAKGHDIDPSGLNYKAG 532 Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608 D+ + A + ++ + + G++Y L L S RG GE + + I + Sbjct: 533 DAFRAAARGKSNQPVVFIDSSGRSYALDPLTLPSARGQGEPLTGKLTPPPGATIEHVLMA 592 Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH--VAVVGE 666 KLL+ S G F+ S+++A R GK L + + +++ GD + + E Sbjct: 593 ADDQKLLMASDAGYGFVCTFSDLVARNRAGKAMLTLPENANVLTPLEINGDDDMLLAITE 652 Query: 667 NRKLLIFSIDQIPEMSRGKG---VRLQSYKDGGISDVICFKIC----EGLTWIDSAGRSY 719 ++L+F + +P++S+GKG V + + + D + + + LT + R Sbjct: 653 AGRMLMFPVHDLPQLSKGKGNKIVSIPAAQAAAGEDTLKWLLVLAPQTSLT-LHIGKRKL 711 Query: 720 NRSENDLLGWLGKRGGVGSLVPKGFPR 746 DL + +RG G+L+P+G R Sbjct: 712 VMKPQDLQKFRAERGRKGTLLPRGLQR 738 >gi|88705253|ref|ZP_01102964.1| DNA topoisomerase IV, A subunit [Congregibacter litoralis KT71] gi|88700343|gb|EAQ97451.1| DNA topoisomerase IV, A subunit [Congregibacter litoralis KT71] Length = 749 Score = 538 bits (1386), Expect = e-150, Method: Compositional matrix adjust. Identities = 296/754 (39%), Positives = 452/754 (59%), Gaps = 26/754 (3%) Query: 6 ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65 ++ +NT+ ++ ++ +SL+ E+ YL Y++ I +RA+P + DG KPV RRII+AMSE+G Sbjct: 1 MTETNTIDDDGIEGISLKQYAEKAYLDYSMYVILDRALPHIGDGLKPVQRRIIYAMSELG 60 Query: 66 LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124 L A FKKSAR VG+VIGK HPHGD + Y+++V +AQ F RYPL+ GQGN+G+ D Sbjct: 61 LKATAKFKKSARTVGDVIGKFHPHGDSAAYEAMVLMAQSFSYRYPLVDGQGNWGSPDDPK 120 Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184 S AA RYTE+R+T A+++L + + VD+ ++ EP + P++ PN+L NGT+GIA Sbjct: 121 SFAAMRYTESRLTAYADVLLGELGQGTVDWVPNFDGTMEEPSLLPAQVPNVLLNGTTGIA 180 Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244 VGMAT IP HN++E+ AA+ L+D P+ ++ +L E I GPD+PT I+ SRE I + Y Sbjct: 181 VGMATDIPPHNLREVVTAAVTLLDAPKTTLAELCEIIQGPDYPTEAEIITSREDIAQIYA 240 Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304 GRGG R+RA W E IVVT +P+Q SR++E+IA+ + AK++P++ D+RDE Sbjct: 241 TGRGGLRMRAVWDTEH-----GDIVVTALPHQASGSRVLEQIAQQMQAKKLPMVADLRDE 295 Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362 S + R+V+ P++ +D D LM +F +D+E + +N+N++ + P V LDGILK Sbjct: 296 SDHENPTRLVIVPRSNRIDRDALMSHLFATTDLERTYRVNLNMIGIDGRPGVRSLDGILK 355 Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422 +WL RRE + RR +R++ + RR+ IL+G L AYLNIDE+I IIR E+ PK +++RF Sbjct: 356 QWLKFRRETVRRRLDYRLERVQRRLHILEGYLAAYLNIDEVIHIIRTEEHPKQALIARFE 415 Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482 L++ Q +AIL L+LR+L KLEE +I+ E D L E++ ++ L S + I E+ + Sbjct: 416 LSDIQAEAILELKLRNLAKLEEMKIRGEQDELEKERDWLEKTLGSEARLKTLIKKELTAI 475 Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542 E + RR+ A +A + ++ +PITVV+S +GWIR+ K H +D ++ Sbjct: 476 AEKYGDD-----RRSPLASREEA-QAFSELELMTADPITVVLSEKGWIRAAKGHDMDPAS 529 Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602 L +K GDS K+A + +++ + G+AYTL NL S RG GE + I+ Sbjct: 530 LSYKSGDSFKLAARGRSNQPAVIIDSTGRAYTLATHNLPSARGQGEPLTGRINPPSGAGF 589 Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-- 660 + DS + L+ S G FI E+ R GK L + + ++ + D Sbjct: 590 DGLMMGDSGQRCLLSSDAGYGFITTLGELQTKNRAGKAALTLPAGARVVSPAPIGEDAQW 649 Query: 661 VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKIC-------EGLT-WI 712 VA V +LL+F + +P +SRGKG ++ + D F I +GLT W Sbjct: 650 VAAVSNEGRLLLFPLADLPSLSRGKGNKIIAIPGPRARDREEFMIATAVLRENDGLTVWA 709 Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746 + RSE L + G+RG G+ +P+GF R Sbjct: 710 GKRHLTLKRSE--LEHYHGERGRRGNKLPRGFQR 741 >gi|251791327|ref|YP_003006048.1| DNA topoisomerase IV subunit A [Dickeya zeae Ech1591] gi|247539948|gb|ACT08569.1| DNA topoisomerase IV, A subunit [Dickeya zeae Ech1591] Length = 758 Score = 537 bits (1384), Expect = e-150, Method: Compositional matrix adjust. Identities = 286/746 (38%), Positives = 453/746 (60%), Gaps = 22/746 (2%) Query: 12 LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71 + + + ++L E YL Y++ I +RA+P + DG KPV RRI++AMSE+GL+ A Sbjct: 4 MTHDGAERLALHTFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAK 63 Query: 72 FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYR 130 FKKSAR VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S AA R Sbjct: 64 FKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMR 123 Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190 YTE+R+++ AE++L + + VD+ ++ EP + P++ PN+L NGT+GIAVGMAT Sbjct: 124 YTESRLSKYAEVLLGELGQGTVDYVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATD 183 Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250 IP HNV+E+ AA+ALID P+ S+E LL Y+ GPDFPT I+ R+ I + Y GRG Sbjct: 184 IPPHNVREVAAAAMALIDEPDTSLEALLRYVQGPDFPTDAEIITPRDEIRKMYESGRGSV 243 Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-- 308 R+RA W E+ GS +V+T +P+QV +R++E+IA + AK++P+++D+RDES + Sbjct: 244 RMRAVWKKED---GS--VVITALPHQVSGARVLEQIASQMRAKKLPMIDDLRDESDHENP 298 Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368 R+VL P++ +D D +M +F +D+E + +NMN++ + P V L IL EWLA R Sbjct: 299 TRLVLVPRSNRIDFDQVMNHLFATTDLEKSYRINMNMIGLDGRPSVKGLREILTEWLAFR 358 Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQV 428 R+ + RR +FR+ + +R+ IL+GLLIA+LNIDE+I IIRNED+PKPV++++F L++ Q Sbjct: 359 RDTVRRRLNFRLDKVLKRLHILEGLLIAFLNIDEVIHIIRNEDEPKPVLMAKFGLSDTQA 418 Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488 +AIL L+LR L KLEE +I+ E D+L E+++I +LL S ++ + EI+E + + Sbjct: 419 EAILELKLRHLAKLEEMKIRGEQDDLAKERDQIQALLASERKMNTLLKKEIQEDAKAYGD 478 Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548 RR+ E A KA + + EP+T+V+S GW+RS K H +D S L +K G Sbjct: 479 D-----RRSPLHERGEA-KAMSEHDLSPSEPVTIVLSEMGWVRSAKGHDIDPSGLSYKAG 532 Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608 D+ + A + ++ + + G++Y L L S RG GE + + L I + Sbjct: 533 DAYRAAARGKSNQPVVFMDSTGRSYALDPLTLPSARGQGEPLTGKLTLPPGATIEQVLMA 592 Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH--VAVVGE 666 +LL+ S G FI ++++A R GK L + ++ +++ D + + Sbjct: 593 ADNQRLLLASDAGYGFICTFADLVARNRVGKAVLTLPDHARVLPPLELQRDDELLLTITA 652 Query: 667 NRKLLIFSIDQIPEMSRGKGVRLQSYKDGGIS---DVICFKIC---EGLTWIDSAGRSYN 720 +LL+F + +P +S+GKG ++ S ++ D I + + + + + R Y+ Sbjct: 653 AGRLLLFPVADLPALSKGKGNKIVSIPAAQLASGDDRILWLMTIAPQSSVTLYAGKRKYS 712 Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPR 746 +L + RG G+ +P+G R Sbjct: 713 LRPEELQKYQASRGCKGTALPRGLQR 738 >gi|329896487|ref|ZP_08271545.1| Topoisomerase IV subunit A [gamma proteobacterium IMCC3088] gi|328921704|gb|EGG29077.1| Topoisomerase IV subunit A [gamma proteobacterium IMCC3088] Length = 753 Score = 537 bits (1384), Expect = e-150, Method: Compositional matrix adjust. Identities = 293/751 (39%), Positives = 450/751 (59%), Gaps = 24/751 (3%) Query: 6 ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65 +S+ L EE+ ++VSLR E+ YL Y++ I +RA+P++ DG KPV RRII+AMSE+G Sbjct: 1 MSDMPMLPEED-ESVSLRDYAEKAYLDYSMYVILDRALPNVGDGLKPVQRRIIYAMSELG 59 Query: 66 LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124 L A +KKSAR VG+VIGK HPHGD + Y+++V +AQPF RYPL+ GQGN+G+ D Sbjct: 60 LKASAKYKKSARTVGDVIGKFHPHGDSAAYEAMVLMAQPFSYRYPLVDGQGNWGSADDPK 119 Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184 S AA RYTE+R+T A+ +L + + VD+ ++ EP V P++ PN+L NGT+GIA Sbjct: 120 SFAAMRYTESRLTAYADALLGELGQGTVDWVPNFDGTMDEPSVLPAQVPNVLLNGTTGIA 179 Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244 VGMAT IP HN++E+ A + L++ P+ ++++L E+I PDFPT I+ R+ I YR Sbjct: 180 VGMATDIPPHNLREVVSATIRLLEYPKSTLDELCEHIQAPDFPTQAEIITPRDEIKAFYR 239 Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304 GRG ++RA W E+ I+V +P+QV ++++E+IA + AK++PL+ D+RDE Sbjct: 240 SGRGSIKMRAHWRKED-----GAIIVDALPHQVSGAKVLEQIAAQMQAKKLPLVNDLRDE 294 Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362 S + R+V+ PK+ +D D LM +F +D+E + +N+N++ P V LD IL+ Sbjct: 295 SDHENPTRLVIVPKSNRVDIDALMLHLFATTDLERSYRINLNLIGNNGRPGVKSLDAILR 354 Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422 EWL R E + RR +R++ + +R+ +L+G LIAYLNIDE+I IIR EDKPKPV++ RF Sbjct: 355 EWLEFRTETVRRRLQYRLEKVLKRLHLLEGYLIAYLNIDEVIHIIRTEDKPKPVLMQRFG 414 Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482 L++ Q +A+L L+LR+L KLEE +I+ E D L E+E+++ L S + I E+ V Sbjct: 415 LSDAQAEAVLELKLRNLAKLEEMKIRGEQDELEKEREQLELTLGSTARMRTLIKKELLAV 474 Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542 E F G R++ KA ++ ++ EPITVV+S +GWIR+ K H +D ++ Sbjct: 475 AEQF------GDERSSPLVAREEAKAFSEKELMSTEPITVVLSEKGWIRAAKGHDIDPTS 528 Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602 L +K GD+ +A + +L+ + G+AYTLP NL S RG GE + I Sbjct: 529 LSYKAGDNFNLAAAGRSNQSAILIDSTGRAYTLPTHNLPSARGQGEPVTGRISPPPGVGF 588 Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV-TGDH- 660 + D K+L+ S G F+ E ++A + GK L + + ++ +V GD Sbjct: 589 KALLLGDERQKILLASDAGYGFVTELGHLMAKNKAGKAILNLPNGSEVLPPAQVPPGDDL 648 Query: 661 -VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDV------ICFKICEGLTWID 713 VA V +LL+F + +PE++RGKG ++ S + I E + Sbjct: 649 LVAAVSTEGRLLVFPLADLPELARGKGNKILSVPSARVKSREEMVKGIAVLTQESRLVLH 708 Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGF 744 + R ++L + G+RG GS +P+G Sbjct: 709 AGKRHLTLKVSELDHYRGERGRRGSKLPRGL 739 >gi|153214093|ref|ZP_01949227.1| topoisomerase IV, subunit A [Vibrio cholerae 1587] gi|124115519|gb|EAY34339.1| topoisomerase IV, subunit A [Vibrio cholerae 1587] Length = 761 Score = 535 bits (1378), Expect = e-149, Method: Compositional matrix adjust. Identities = 286/745 (38%), Positives = 454/745 (60%), Gaps = 25/745 (3%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 + V+ + LR EE YL Y++ I +RA+P + DG KPV RRII+AMSE+GL A +KK Sbjct: 8 DGVEQLPLRQFTEEAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSASAKYKK 67 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTE 133 SAR VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S AA RYTE Sbjct: 68 SARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 127 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 A++++ AE++L + + VD++ ++ EP + P++ P++L NG +GIAVGMAT IP Sbjct: 128 AKLSKFAEILLSELGQGTVDWQPNFDGTMQEPKMLPARLPHILLNGVTGIAVGMATDIPP 187 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HNV+E+ +A + LIDNP + L++Y+ GPDFPT I+ + + YR GRG ++R Sbjct: 188 HNVREVADATIHLIDNPNAPLTDLMQYVKGPDFPTEAEIITPTVELEKIYRSGRGSIKMR 247 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRI 311 A WC E GS IV+T +P+QV ++L+E+IA + AK++P++ED+RDES + RI Sbjct: 248 AVWCKE----GS-DIVITALPHQVSGAKLLEQIAAQMRAKKLPMVEDLRDESDHENPTRI 302 Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371 V+ P++ +D DLLM +F +D+E F +N+N++ + PQV L IL EW++ RRE Sbjct: 303 VIVPRSNRVDCDLLMNHLFASTDLEKSFRVNLNMIGLDNRPQVKGLVQILSEWISFRRET 362 Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431 + R +R+ + R+ IL+GLLIAYLN+DE+I IIRNED PK V+++RF LT+ Q DAI Sbjct: 363 VRSRLQYRLDKVLARLHILQGLLIAYLNLDEVIEIIRNEDDPKAVLMARFDLTDLQADAI 422 Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491 L+ +LR L KLEE +I+ E D L E++K++ LL S ++ N + EI+ + F Sbjct: 423 LDTKLRHLAKLEEMKIRGEQDELEKERKKLEELLGSERRLNNLLKKEIKADADKFGDD-- 480 Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551 RR+ E A KA ++ ++ E ITVV+S +GWIR K H VD +L++K GD+ Sbjct: 481 ---RRSPLVEREEA-KALTERDLMPSEAITVVLSEKGWIRHAKGHDVDCQSLNYKAGDNY 536 Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611 + + + L +DG++Y+L + L S RG GE I +++ I + + Sbjct: 537 LTHACGKSNQQAVFLGSDGRSYSLESHTLPSARGQGEPITGRLNVAEGTTIRQVVMGEED 596 Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVAVVGENR 668 LV S G F+ + ++++ R GK + + ++ +++ + D + + Sbjct: 597 QLWLVGSDAGYGFVCKGDDLLSKNRSGKALINLPENSEVMTPQVIADLDNDEILAITNQG 656 Query: 669 KLLIFSIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTWIDSAGRSYNR 721 ++L+F I +P++S+GKG ++ ++ +S+++ +T + + R Sbjct: 657 RMLLFPIKDLPQLSKGKGNKIINIPAAKAKTREEVLSNLMVLPQGASIT-LYAGKRKLGL 715 Query: 722 SENDLLGWLGKRGGVGSLVPKGFPR 746 +DL + G+RG G+L+P+G R Sbjct: 716 KVSDLDNFRGERGRRGALLPRGLQR 740 >gi|327484922|gb|AEA79329.1| Topoisomerase IV subunit A [Vibrio cholerae LMA3894-4] Length = 761 Score = 535 bits (1378), Expect = e-149, Method: Compositional matrix adjust. Identities = 288/744 (38%), Positives = 454/744 (61%), Gaps = 23/744 (3%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 + V+ + LR E+ YL Y++ I +RA+P + DG KPV RRII+AMSE+GL A +KK Sbjct: 8 DGVEQLPLRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSASAKYKK 67 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTE 133 SAR VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S AA RYTE Sbjct: 68 SARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 127 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 A++++ AE++L + + VD++ ++ EP + P++ P++L NG +GIAVGMAT IP Sbjct: 128 AKLSKFAEILLSELGQGTVDWQPNFDGTMQEPKMLPARLPHILLNGVTGIAVGMATDIPP 187 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HNV+E+ +A + LIDNP + L++Y+ GPDFPT I+ + + YR GRG ++R Sbjct: 188 HNVREVADATIHLIDNPNAPLTDLMQYVKGPDFPTEAEIITPTVELEKIYRSGRGSIKMR 247 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRI 311 A WC E GS IV+T +P+QV ++L+E+IA + AK++P++ED+RDES + RI Sbjct: 248 AVWCKE----GS-DIVITALPHQVSGAKLLEQIAAQMRAKKLPMVEDLRDESDHENPTRI 302 Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371 V+ P++ +D DLLM +F +D+E F +N+N++ + PQV L IL EW++ RRE Sbjct: 303 VIVPRSNRVDCDLLMNHLFASTDLEKSFRVNLNMIGLDNRPQVKGLVQILSEWISFRRET 362 Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431 + R +R+ + R+ IL+GLLIAYLN+DE+I IIRNED PK V+++RF LT+ Q DAI Sbjct: 363 VRSRLQYRLDKVLARLHILQGLLIAYLNLDEVIEIIRNEDDPKAVLMARFDLTDLQADAI 422 Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491 L+ +LR L KLEE +I+ E D L E++K++ LL S ++ N + EI+ + F Sbjct: 423 LDTKLRHLAKLEEMKIRGEQDELEKERKKLEELLGSERRLNNLLKKEIKADADKFGDD-- 480 Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551 RR+ E A KA ++ ++ E ITVV+S +GWIR K H VD +L++K GD+ Sbjct: 481 ---RRSPLVEREEA-KALTERDLMPSEAITVVLSEKGWIRHAKGHDVDCQSLNYKAGDNY 536 Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611 + + + L +DG++Y+L + L S RG GE I +++ I + + Sbjct: 537 LTHACGKSNQQAVFLGSDGRSYSLESHTLPSARGQGEPITGRLNVAEGTTIRQVVMGEED 596 Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVAVVGENR 668 LV S G F+ + ++++ R GK + + ++ +++ + D + + Sbjct: 597 QLWLVGSDAGYGFVCKGDDLLSKNRSGKALINLPENSEVMTPQVIADLDNDEILAITNQG 656 Query: 669 KLLIFSIDQIPEMSRGKG---VRLQSYKDGGISDVIC--FKICEGLTWIDSAG-RSYNRS 722 ++L+F I +P++S+GKG + + + K +V+ + +G + AG R Sbjct: 657 RMLLFPIKDLPQLSKGKGNKIINIPAAKANSREEVLSNLMVLPQGASITLYAGKRKLGLK 716 Query: 723 ENDLLGWLGKRGGVGSLVPKGFPR 746 +DL + G+RG G+L+P+G R Sbjct: 717 VSDLDNFRGERGRRGALLPRGLQR 740 >gi|88812693|ref|ZP_01127940.1| DNA topoisomerase IV subunit A [Nitrococcus mobilis Nb-231] gi|88790109|gb|EAR21229.1| DNA topoisomerase IV subunit A [Nitrococcus mobilis Nb-231] Length = 747 Score = 535 bits (1377), Expect = e-149, Method: Compositional matrix adjust. Identities = 294/741 (39%), Positives = 439/741 (59%), Gaps = 23/741 (3%) Query: 22 LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81 LR E+ YL Y++ I +RA+P L DG KPV RRII+AMSE+G+ A +KKSAR VG+ Sbjct: 13 LREFTEKAYLDYSMYVILDRALPHLGDGLKPVQRRIIYAMSELGISAAAKYKKSARTVGD 72 Query: 82 VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID-GDSAAAYRYTEARMTQVA 140 V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G+ D S AA RYTEAR+T+ A Sbjct: 73 VLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGSADEPKSFAAMRYTEARLTRYA 132 Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200 +L+L + E V++ ++ EP + P++ PNLL NG++GIAVGMAT IP HN++E+ Sbjct: 133 QLLLTELGEGTVEWMPNFDGTLEEPRILPARLPNLLLNGSTGIAVGMATDIPPHNLREVV 192 Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEE 260 A + L+D P+ S+ L E I+GPDFPT I+ E I Y +G GG R RA W Sbjct: 193 AACIHLLDQPDASVADLCEAILGPDFPTRAEIITPAEDIRRFYEIGYGGLRQRACW---- 248 Query: 261 VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFPKNR 318 R IV+T +PYQV S+++E+IA + +K++P++ED+RDES D R+++ P++ Sbjct: 249 -ERDGLDIVITALPYQVSGSKVLEQIAAQMQSKKLPMVEDLRDESDHDSPTRLIITPRSA 307 Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378 +D + LM+ +F +D+E + +N+NV+ + P+V L IL EWL R E + RR + Sbjct: 308 RVDAEPLMQHLFATTDLEKTYRVNLNVIGLDARPRVRNLREILTEWLRFRTETVCRRLQW 367 Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRS 438 R+ ++ R+ +L G LIA+LNIDE+IAIIR EDKPK V++ RF LTE Q +AIL LRLR Sbjct: 368 RLDKVEARLHLLDGYLIAFLNIDEVIAIIRAEDKPKLVLMERFGLTERQAEAILELRLRH 427 Query: 439 LRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTT 498 L KLEE +I +E D LL E++++ S+LNS + I E++E + + G R + Sbjct: 428 LAKLEEIKIHAEQDELLRERDRLRSILNSEARLKALIKSELQEDAQKY------GDPRCS 481 Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAH 558 + +A ++ EP+T+V+S RGWIR+ K H VD L +K GD + A Sbjct: 482 PLVQRGSARALSDTELVPSEPVTLVLSQRGWIRAAKGHDVDAQRLSYKAGDGYRDAAIGR 541 Query: 559 TTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVS 618 T + + L + G+AY+LPA L S RG GE + + L + + D L+ S Sbjct: 542 TNQQAVFLDSQGRAYSLPAHTLPSARGQGEPLTGRLSLPGGGEFSYVLLGDPDSLWLLAS 601 Query: 619 SKGNAFIVEESEIIANTRKGKTFLKVSSEE---KMKLVVKVTGDHVAVVGENRKLLIFSI 675 G FI + + R GK L V+ K + + D + +LL+F + Sbjct: 602 DHGYGFITRLGNLYSKNRAGKAVLSVAGGAQPLKPARIYALAQDRLVAATTAGRLLVFPL 661 Query: 676 DQIPEMSRGKG---VRLQSYKDGGISDVIC--FKICEGLTWIDSAG-RSYNRSENDLLGW 729 ++PE+ +GKG +++ S + +V+ + G I AG R+ +DL + Sbjct: 662 QELPELGKGKGNKLIQIPSPRLKTREEVVAGVLAVPPGRAVILQAGKRTLTLRPSDLERY 721 Query: 730 LGKRGGVGSLVPKGFPRSGKF 750 LG+RG G +P+GF R +F Sbjct: 722 LGQRGRRGDALPRGFQRVQQF 742 >gi|121729937|ref|ZP_01682359.1| topoisomerase IV, subunit A [Vibrio cholerae V52] gi|121628325|gb|EAX60832.1| topoisomerase IV, subunit A [Vibrio cholerae V52] Length = 761 Score = 535 bits (1377), Expect = e-149, Method: Compositional matrix adjust. Identities = 286/745 (38%), Positives = 454/745 (60%), Gaps = 25/745 (3%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 + V+ + LR E+ YL Y++ I +RA+P + DG KPV RRII+AMSE+GL A +KK Sbjct: 8 DGVEQLPLRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSASAKYKK 67 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTE 133 SAR VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S AA RYTE Sbjct: 68 SARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 127 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 A++++ AE++L + + VD++ ++ EP + P++ P++L NG +GIAVGMAT IP Sbjct: 128 AKLSKFAEILLSELGQGTVDWQPNFDGTMQEPKMLPARLPHILLNGVTGIAVGMATDIPP 187 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HNV+E+ EA + LIDNP + L++Y+ GPDFPT I+ + + YR GRG R+R Sbjct: 188 HNVREVAEATIHLIDNPNAPLTDLMQYVKGPDFPTEAEIITPTVELEKIYRSGRGSVRMR 247 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRI 311 A WC E GS IV+T +P+QV ++L+E+IA + AK++P++ED+RDES + RI Sbjct: 248 AVWCKE----GS-DIVITALPHQVSGAKLLEQIAAQMRAKKLPMVEDLRDESDHENPTRI 302 Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371 V+ P++ +D DLLM +F +D+E F +N+N++ + PQV L IL EW++ RRE Sbjct: 303 VIVPRSNRVDCDLLMNHLFASTDLEKSFRVNLNMIGLDNRPQVKGLVQILSEWISFRRET 362 Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431 + R +R+ + R+ +L+GLLIAYLN+DE+I IIRNED PK V+++RF LT+ Q DAI Sbjct: 363 VRSRLQYRLDKVLARLHVLQGLLIAYLNLDEVIEIIRNEDDPKAVLMARFDLTDIQADAI 422 Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491 L+ +LR L KLEE +I+ E D L E++K++ LL S ++ N + EI+ + F Sbjct: 423 LDTKLRHLAKLEEMKIRGEQDELEKERKKLEELLGSERRLNNLLKKEIKADADKFGDD-- 480 Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551 RR+ E A KA ++ ++ E ITVV+S +GWIR K H VD +L++K GD+ Sbjct: 481 ---RRSPLVEREEA-KALTERDLMPSEAITVVLSEKGWIRHAKGHDVDCQSLNYKAGDNY 536 Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611 + + + L +DG++Y+L + L S RG GE I +++ I + + Sbjct: 537 LTHACGKSNQQAVFLGSDGRSYSLESHTLPSARGQGEPITGRLNVAEGTTIRQVVMGEED 596 Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVAVVGENR 668 LV S G F+ + ++++ R GK + + ++ +++ + D + + Sbjct: 597 QLWLVGSDAGYGFVCKGDDLLSKNRSGKALINLPENSEVMTPQVIADLDKDEILAITNQG 656 Query: 669 KLLIFSIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTWIDSAGRSYNR 721 ++L+F I +P++S+GKG ++ ++ +S+++ +T + + R Sbjct: 657 RMLLFPIKDLPQLSKGKGNKIINIPAAKAKTREEVLSNLMVLPQGASIT-LYAGKRKLGL 715 Query: 722 SENDLLGWLGKRGGVGSLVPKGFPR 746 +DL + G+RG G+L+P+G R Sbjct: 716 KVSDLDNFRGERGRRGALLPRGLQR 740 >gi|290474835|ref|YP_003467715.1| DNA topoisomerase IV subunit A [Xenorhabdus bovienii SS-2004] gi|289174148|emb|CBJ80935.1| DNA topoisomerase IV, subunit A [Xenorhabdus bovienii SS-2004] Length = 751 Score = 534 bits (1376), Expect = e-149, Method: Compositional matrix adjust. Identities = 291/751 (38%), Positives = 455/751 (60%), Gaps = 30/751 (3%) Query: 12 LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71 + + V+ L E YL Y++ I +RA+P + DG KPV RRI++AMSE+GL A Sbjct: 4 ITHDGVECQPLHTFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLSNSAK 63 Query: 72 FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYR 130 FKKSAR VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S AA R Sbjct: 64 FKKSARTVGDVLGKYHPHGDGACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMR 123 Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190 YTE+R+++ AEL+L + VD+ ++ EP + P++ PN+L NGT+GIAVGMAT Sbjct: 124 YTESRLSKYAELLLSELGHGTVDWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATD 183 Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250 IP HNV+E+ A +A++DNP S++ ++EYI GPD+PT I+ S+E I + Y+ GRG Sbjct: 184 IPPHNVREVVSALVAMLDNPNCSLDDVMEYIKGPDYPTEAEIITSKEDIRKIYKNGRGSV 243 Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-- 308 R+RA W EE +V+T +P+QV ++++E+IA + AK++P+++D+RDES + Sbjct: 244 RMRAVWSKEESN-----VVITALPHQVSGAKVLEQIASQMRAKKLPMVDDLRDESDHENP 298 Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368 R+V+ PKN +D + +M +F+ +D+E + +N+N++ + P V L IL EWL R Sbjct: 299 TRLVIVPKNNRVDVEQVMNHLFVTTDLEKSYRVNLNMIGLDNRPNVKGLVEILSEWLVFR 358 Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQV 428 RE + R ++R++ + +R+ IL GLL AYL+IDE+I IIRNED+PKPV++ RF LTE Q Sbjct: 359 RETVRNRLNYRLEKVLKRLHILDGLLKAYLSIDEVIQIIRNEDEPKPVLMQRFELTETQA 418 Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488 +AIL L+LR L KLEE +I+ E D L E++K+ ++L S ++ + KEI + Sbjct: 419 EAILELKLRHLAKLEEVKIRGEQDGLAKERDKLQAILGSERKLSTLLK------KEIIAD 472 Query: 489 STDLG-RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKE 547 + + G RR+ E S A KA ++ EPITVV+S GW+RS K H +D + L++K Sbjct: 473 AENYGDHRRSPLKERSEA-KAMSDHDILPSEPITVVLSEMGWVRSAKGHEIDPAGLNYKS 531 Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ-LLIDLNHNQDIVTAF 606 GDS + A + ++ + T G++Y++ +L S RG GE + L+ L I Sbjct: 532 GDSFRSAARGKSNQPVVFIDTTGRSYSVDPLDLPSARGQGEPLTGKLLALPAGASIEHLL 591 Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH----VA 662 + K L+ S G FI S++IA R GK + + K+ +++T + +A Sbjct: 592 IAKEEQKFLMASDAGYGFICTFSDLIAKNRAGKALITLPENAKVMQPLEITNEQDDMLLA 651 Query: 663 VVGENRKLLIFSIDQIPEMSRGKGVRLQSYK-------DGGISDVICFKICEGLTWIDSA 715 + E R +L+F + +P++S+GKG ++ S + +S ++ + +T Sbjct: 652 ITKEGR-MLMFPVADLPQLSKGKGNKIVSIPAAQAASGEDMLSWLLVLPVQSSITLYFGK 710 Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746 + R E DL + +RG G+ +P+G R Sbjct: 711 RKLLLRPE-DLQKFRAERGRKGTSLPRGLQR 740 >gi|227082551|ref|YP_002811102.1| topoisomerase IV, subunit A [Vibrio cholerae M66-2] gi|227010439|gb|ACP06651.1| topoisomerase IV, subunit A [Vibrio cholerae M66-2] Length = 761 Score = 534 bits (1376), Expect = e-149, Method: Compositional matrix adjust. Identities = 288/744 (38%), Positives = 455/744 (61%), Gaps = 23/744 (3%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 + V+ + LR E+ YL Y++ I +RA+P + DG KPV RRII+AMSE+GL A +KK Sbjct: 8 DGVEQLPLRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSASAKYKK 67 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTE 133 SAR VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S AA RYTE Sbjct: 68 SARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 127 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 A++++ AE++L + + VD++ ++ EP + P++ P++L NG +GIAVGMAT IP Sbjct: 128 AKLSKFAEILLSELGQGTVDWQPNFDGTMQEPKMLPARLPHILLNGVTGIAVGMATDIPP 187 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HNV+E+ +A + LIDNP + L++Y+ GPDFPT I+ + + YR GRG ++R Sbjct: 188 HNVREVADATIHLIDNPNAPLTDLMQYVKGPDFPTEAEIITPTVELEKIYRSGRGSIKMR 247 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRI 311 A WC E GS IV+T +P+QV ++L+E+IA + AK++P++ED+RDES + RI Sbjct: 248 AVWCKE----GS-DIVITALPHQVSGAKLLEQIAAQMRAKKLPMVEDLRDESDHENPTRI 302 Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371 V+ P++ +D DLLM +F +D+E F +N+N++ + PQV L IL EW++ RRE Sbjct: 303 VIVPRSNRVDCDLLMNHLFASTDLEKSFRVNLNMIGLDNRPQVKGLVQILSEWISFRRET 362 Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431 + R +R+ + R+ IL+GLLIAYLN+DE+I IIRNED PK V+++RF LT+ Q DAI Sbjct: 363 VRSRLQYRLDKVLARLHILQGLLIAYLNLDEVIEIIRNEDDPKAVLMARFDLTDIQADAI 422 Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491 L+ +LR L KLEE +I+ E D L E++K++ LL S ++ N + EI+ + F Sbjct: 423 LDTKLRHLAKLEEMKIRGEQDELEKERKKLEELLGSERRLNNLLKKEIKADADKFGDD-- 480 Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551 RR+ E A KA ++ ++ E ITVV+S +GWIR K H+VD +L++K GD+ Sbjct: 481 ---RRSPLVEREEA-KALTERDLMPSEAITVVLSEKGWIRHAKGHNVDCQSLNYKAGDNY 536 Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611 + + + L +DG++Y+L + L S RG GE I +++ I + + Sbjct: 537 LTHACGKSNQQAVFLGSDGRSYSLESHTLPSARGQGEPITGRLNVAEGTTIRQVVMGEED 596 Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVAVVGENR 668 LV S G F+ + ++++ R GK + + ++ +++ + D + + Sbjct: 597 QLWLVGSDAGYGFVCKGDDLLSKNRSGKALINLPENSEVMTPQVIADLDNDEILAITNQG 656 Query: 669 KLLIFSIDQIPEMSRGKG---VRLQSYKDGGISDVIC--FKICEGLTWIDSAG-RSYNRS 722 ++L+F I +P++S+GKG + + + K +V+ + +G + AG R Sbjct: 657 RMLLFPIKDLPQLSKGKGNKIINIPAAKAKTREEVLSNLMVLPQGASITLYAGKRKLGLK 716 Query: 723 ENDLLGWLGKRGGVGSLVPKGFPR 746 +DL + G+RG G+L+P+G R Sbjct: 717 VSDLDNFRGERGRRGALLPRGLQR 740 >gi|153827235|ref|ZP_01979902.1| topoisomerase IV, subunit A [Vibrio cholerae MZO-2] gi|149738849|gb|EDM53185.1| topoisomerase IV, subunit A [Vibrio cholerae MZO-2] Length = 761 Score = 534 bits (1375), Expect = e-149, Method: Compositional matrix adjust. Identities = 285/745 (38%), Positives = 455/745 (61%), Gaps = 25/745 (3%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 + V+ + LR E+ YL Y++ I +RA+P + DG KPV RRII+AMSE+GL A +KK Sbjct: 8 DGVEQLPLRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSASAKYKK 67 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTE 133 SAR VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S AA RYTE Sbjct: 68 SARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 127 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 A++++ AE++L + + VD++ ++ EP + P++ P++L NG +GIAVGMAT IP Sbjct: 128 AKLSKFAEILLSELGQGTVDWQPNFDGTMQEPKMLPARLPHILLNGVTGIAVGMATDIPP 187 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HNV+E+ +A + LIDNP + L++Y+ GPDFPT I+ + + YR GRG ++R Sbjct: 188 HNVREVADATIHLIDNPNAPLTDLMQYVKGPDFPTEAEIITPTVELEKIYRSGRGSIKMR 247 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRI 311 A WC E GS IV+T +P+QV ++L+E+IA + AK++P++ED+RDES + RI Sbjct: 248 AVWCKE----GS-DIVITALPHQVSGAKLLEQIAAQMRAKKLPMVEDLRDESDHENPTRI 302 Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371 V+ P++ +D DLLM +F +D+E F +N+N++ + PQV L IL EW++ RRE Sbjct: 303 VIVPRSNRVDCDLLMNHLFASTDLEKSFRVNLNMIGLDNRPQVKGLVQILSEWISFRRET 362 Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431 + R +R+ + R+ IL+GLLIAYLN+DE+I IIRNED PK V+++RF LT+ Q DAI Sbjct: 363 VRSRLQYRLDKVLARLHILQGLLIAYLNLDEVIEIIRNEDDPKAVLMARFDLTDLQADAI 422 Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491 L+ +LR L KLEE +I+ E D L E++K++ LL S ++ N + EI+ + F Sbjct: 423 LDTKLRHLAKLEEMKIRGEQDELEKERKKLEELLGSERRLNNLLKKEIKADADKFGDD-- 480 Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551 RR+ E A KA ++ ++ E ITVV+S +GWIR K H VD +L++K GD+ Sbjct: 481 ---RRSPLVEREEA-KALTERDLMPSEAITVVLSEKGWIRHAKGHDVDCQSLNYKAGDNY 536 Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611 + + + L +DG++Y+L + +L S RG GE I +++ I + + Sbjct: 537 LTHACGKSNQQAVFLGSDGRSYSLESHSLPSARGQGEPITGRLNVAEGTTIRQVVMGEED 596 Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVAVVGENR 668 LV S G F+ + ++++ R GK + + ++ +++ + D + + Sbjct: 597 QLWLVGSDAGYGFVCKGDDLLSKNRSGKALINLPENSEVMTPQVIADLDNDEILAITNQG 656 Query: 669 KLLIFSIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTWIDSAGRSYNR 721 ++L+F I +P++S+GKG ++ ++ +S+++ +T + + R Sbjct: 657 RMLLFPIKDLPQLSKGKGNKIINIPAAKAKTREEVLSNLMVLPQGSSIT-LYAGKRKLGL 715 Query: 722 SENDLLGWLGKRGGVGSLVPKGFPR 746 +DL + G+RG G+L+P+G R Sbjct: 716 KVSDLDNFRGERGRRGALLPRGLQR 740 >gi|271498908|ref|YP_003331933.1| DNA topoisomerase IV subunit A [Dickeya dadantii Ech586] gi|270342463|gb|ACZ75228.1| DNA topoisomerase IV, A subunit [Dickeya dadantii Ech586] Length = 758 Score = 534 bits (1375), Expect = e-149, Method: Compositional matrix adjust. Identities = 285/746 (38%), Positives = 451/746 (60%), Gaps = 22/746 (2%) Query: 12 LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71 + + + ++L E YL Y++ I +RA+P + DG KPV RRI++AMSE+GL A Sbjct: 4 MTHDGAERLALHTFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLSASAK 63 Query: 72 FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYR 130 FKKSAR VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S AA R Sbjct: 64 FKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMR 123 Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190 YTE+R+++ AE++L + + VD+ ++ EP + P++ PN+L NGT+GIAVGMAT Sbjct: 124 YTESRLSKYAEVLLGELGQGTVDYVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATD 183 Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250 IP HNV+E+ AA+ALID P+ +E LL ++ GPDFPT I+ R+ I + Y GRG Sbjct: 184 IPPHNVREVAAAAIALIDEPDTPLEALLRHVQGPDFPTEAEIITPRDEIRKMYESGRGSV 243 Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-- 308 R+RA W E+ GS +V+T +P+QV +R++E+IA + AK++P+L+D+RDES + Sbjct: 244 RMRAVWRKED---GS--VVITSLPHQVSGARVLEQIASQMRAKKLPMLDDLRDESDHENP 298 Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368 R+VL P++ +D D +M +F +D+E + +NMN++ + P V L IL EWLA R Sbjct: 299 TRLVLVPRSNRVDLDQVMNHLFATTDLEKSYRINMNMIGLDGRPAVKGLREILTEWLAFR 358 Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQV 428 R+ + RR +FR+ + +R+ IL+GLLIA+LNIDE+I IIRNED+PKPV++++F L++ Q Sbjct: 359 RDTVRRRLNFRLDKVLKRLHILEGLLIAFLNIDEVIHIIRNEDEPKPVLMAKFGLSDTQA 418 Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488 +AIL L+LR L KLEE +I+ E D+L E+++I +LL S ++ + EI+E + + Sbjct: 419 EAILELKLRHLAKLEEMKIRGEQDDLAKERDQIQALLASERKMNTLLKKEIQEDAKAYGD 478 Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548 RR+ E A KA + + EP+T+V+S GW+RS K H +D S L +K G Sbjct: 479 D-----RRSPLHERGEA-KAMSEHDLSPSEPVTIVLSEMGWVRSAKGHDIDPSGLSYKAG 532 Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608 D+ + A + ++ + + G++Y L L S RG GE + + L I + Sbjct: 533 DAYRAAARGKSNQPVVFMDSTGRSYALDPLTLPSARGQGEPLTGKLTLPPGASIEQVLMA 592 Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--KLVVKVTGDHVAVVGE 666 +LL+ S G FI ++++A R GK L + ++ L ++ D + + Sbjct: 593 ADNQRLLLASDAGYGFICTFADLVARNRVGKAVLTLPDNARVLPPLELQRDDDLLLTITA 652 Query: 667 NRKLLIFSIDQIPEMSRGKGVRLQSYKDGGIS---DVICFKIC---EGLTWIDSAGRSYN 720 ++L+F + +P +S+GKG ++ S ++ D I + + + + + R Y+ Sbjct: 653 AGRMLLFPVADLPALSKGKGNKIVSIPAAQLASGDDRILWLMAIAPQSSVTLYAGKRKYS 712 Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPR 746 +L + RG G+ +P+G R Sbjct: 713 LRPEELQKYQASRGCKGTSLPRGLQR 738 >gi|227326925|ref|ZP_03830949.1| DNA topoisomerase IV subunit A [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 756 Score = 534 bits (1375), Expect = e-149, Method: Compositional matrix adjust. Identities = 285/752 (37%), Positives = 458/752 (60%), Gaps = 35/752 (4%) Query: 12 LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71 + + ++++LR E YL Y++ I +RA+P + DG KPV RRI++AMSE+GL+ A Sbjct: 4 MTHDGAESLALRTFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNSSAK 63 Query: 72 FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYR 130 FKKSAR VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S AA R Sbjct: 64 FKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMR 123 Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190 YTE+R+++ AEL+L + + VD+ ++ EP + P++ PN+L NGT+GIAVGMAT Sbjct: 124 YTESRLSKYAELLLSELGQGTVDYTPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATD 183 Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250 IP HNV+E+ AA+ L++NP+ S+E+LL+++ GPDFPT I+ R+ + + Y+ GRG Sbjct: 184 IPPHNVREVAAAAVMLLENPKASLEELLQHVQGPDFPTEAEIITPRDEVRKLYQNGRGSV 243 Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-- 308 R+RA W E+ +V+T +P+QV ++++E+IA + AK++P++ED+RDES + Sbjct: 244 RMRAVWKKED-----GDVVITALPHQVSGAKVLEQIASQMRAKKLPMVEDLRDESDHENP 298 Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368 R+VL P++ +D D +M +F +D+E + +NMN++ + P V L IL EWL R Sbjct: 299 TRLVLVPRSNRIDMDQVMNHLFATTDLEKSYRVNMNMIGLDGRPSVKGLVEILSEWLVFR 358 Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQV 428 R+ + RR ++R++ + +R+ IL+GLLIA+LNIDE+I IIR ED+PKPV++ +FSL+E Q Sbjct: 359 RDTVCRRLNYRLEKVLKRLHILEGLLIAFLNIDEVIHIIRTEDEPKPVLMRQFSLSETQA 418 Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488 +AIL L+LR L KLEE +I+ E D+L E++++ +LL S ++ N I EI+ + + Sbjct: 419 EAILELKLRHLAKLEEMKIRGEQDDLAKERDQLQALLASDRKLSNLIKKEIQSDAQAYGD 478 Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548 RR+ E S A KA + + EP+T+V+S GW+RS K H +D + L +K G Sbjct: 479 D-----RRSPLRERSEA-KAMSEHDFVPSEPVTIVLSEMGWVRSAKGHDIDPTGLSYKAG 532 Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608 DS + + ++ + + G++Y L L S RG GE + + I + Sbjct: 533 DSFRAVAKGKSNQPVVFIDSTGRSYALDPITLPSARGQGEPLTGKLTPPPGATIEQVLMA 592 Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH---VAVVG 665 LL+ S G F+ ++++A R GK + + K +++ GD +A+ Sbjct: 593 ADDQPLLMASDAGYGFVCTFNDLVARNRAGKAIITLPDNAKALAPIEIKGDDNLLMAITA 652 Query: 666 ENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWI------DSAGRSY 719 R +L+F + +P++S+GKG ++ S IS + + LTW+ S + Sbjct: 653 AGR-MLLFPVSDLPQLSKGKGNKIVS-----ISSADFAEGKDRLTWLYLLPPQASVTLYF 706 Query: 720 NRSE-----NDLLGWLGKRGGVGSLVPKGFPR 746 + + N+L + G+RG G+L+ +G R Sbjct: 707 GKRKLVLRPNELQKYQGERGRKGTLL-RGLQR 737 >gi|229527036|ref|ZP_04416431.1| topoisomerase IV subunit A [Vibrio cholerae 12129(1)] gi|229335433|gb|EEO00915.1| topoisomerase IV subunit A [Vibrio cholerae 12129(1)] Length = 761 Score = 533 bits (1374), Expect = e-149, Method: Compositional matrix adjust. Identities = 288/744 (38%), Positives = 454/744 (61%), Gaps = 23/744 (3%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 + V+ + LR E+ YL Y++ I +RA+P + DG KPV RRII+AMSE+GL A +KK Sbjct: 8 DGVEQLPLRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSASAKYKK 67 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTE 133 SAR VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S AA RYTE Sbjct: 68 SARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 127 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 A++++ AE++L + + VD++ ++ EP + P++ P++L NG +GIAVGMAT IP Sbjct: 128 AKLSKFAEILLSELGQGTVDWQPNFDGTMQEPKMLPARLPHILLNGVTGIAVGMATDIPP 187 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HNV+E+ +A + LIDNP + L++Y+ GPDFPT I+ + + YR GRG ++R Sbjct: 188 HNVREVADATIHLIDNPNAPLTDLMQYVKGPDFPTEAEIITPTVELEKIYRSGRGSIKMR 247 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRI 311 A WC E GS IV+T +P+QV ++L+E+IA + AK++P++ED+RDES + RI Sbjct: 248 AVWCKE----GS-DIVITALPHQVSGAKLLEQIAAQMRAKKLPMVEDLRDESDHENPTRI 302 Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371 V+ P++ +D DLLM +F +D+E F +N+N++ + PQV L IL EW++ RRE Sbjct: 303 VIVPRSNRVDCDLLMNHLFASTDLEKSFRVNLNMIGLDNRPQVKGLVQILSEWISFRRET 362 Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431 + R +R+ + R+ IL+GLLIAYLN+DE+I IIRNED PK V+++RF LT+ Q DAI Sbjct: 363 VRSRLQYRLDKVLARLHILQGLLIAYLNLDEVIEIIRNEDDPKAVLMARFDLTDLQADAI 422 Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491 L+ +LR L KLEE +I+ E D L E++K++ LL S ++ N + EI+ + F Sbjct: 423 LDTKLRHLAKLEEMKIRGEQDELEKERKKLEELLGSERRLNNLLKKEIKADADKFGDD-- 480 Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551 RR+ E A KA ++ ++ E ITVV+S +GWIR K H VD +L++K GD+ Sbjct: 481 ---RRSPLVEREEA-KALTERDLMPSEAITVVLSEKGWIRHAKGHDVDCQSLNYKAGDNY 536 Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611 + + + L +DG++Y+L + L S RG GE I +++ I + + Sbjct: 537 LTHACGKSNQQAVFLGSDGRSYSLESHTLPSARGQGEPITGRLNVAEGTTIRQVVMGEED 596 Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVAVVGENR 668 LV S G F+ + ++++ R GK + + ++ +++ + D + + Sbjct: 597 QLWLVGSDAGYGFVCKGDDLLSKNRSGKALINLPENSEVMTPQVIADLDNDEILAITNQG 656 Query: 669 KLLIFSIDQIPEMSRGKG---VRLQSYKDGGISDVIC--FKICEGLTWIDSAG-RSYNRS 722 ++L+F I +P++S+GKG + + + K +V+ + +G + AG R Sbjct: 657 RMLLFPIKDLPQLSKGKGNKIINIPAAKAKTREEVLSNLMVLPQGASITLYAGKRKLGLK 716 Query: 723 ENDLLGWLGKRGGVGSLVPKGFPR 746 +DL + G+RG G+L+P+G R Sbjct: 717 VSDLDNFRGERGRRGALLPRGLQR 740 >gi|254291774|ref|ZP_04962559.1| topoisomerase IV, subunit A [Vibrio cholerae AM-19226] gi|150422286|gb|EDN14248.1| topoisomerase IV, subunit A [Vibrio cholerae AM-19226] Length = 761 Score = 533 bits (1374), Expect = e-149, Method: Compositional matrix adjust. Identities = 285/745 (38%), Positives = 453/745 (60%), Gaps = 25/745 (3%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 + V+ + LR E+ YL Y++ I +RA+P + DG KPV RRII+AMSE+GL A +KK Sbjct: 8 DGVEQLPLRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSASAKYKK 67 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTE 133 SAR VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S AA RYTE Sbjct: 68 SARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 127 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 A++++ AE++L + + VD++ ++ EP + P++ P++L NG +GIAVGMAT IP Sbjct: 128 AKLSKFAEILLSELGQGTVDWQPNFDGTMQEPKMLPARLPHILLNGVTGIAVGMATDIPP 187 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HNV+E+ +A + LIDNP + L++Y+ GPDFPT I+ + + YR GRG ++R Sbjct: 188 HNVREVADATIHLIDNPNAPLTDLMQYVKGPDFPTEAEIITPTVDLEKIYRSGRGSIKMR 247 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRI 311 A WC E GS IV+T +P+QV ++L+E+IA + AK++P++ED+RDES + RI Sbjct: 248 AVWCKE----GS-DIVITALPHQVSGAKLLEQIAAQMRAKKLPMVEDLRDESDHENPTRI 302 Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371 V+ P++ +D DLLM +F +D+E F +N+N++ + PQV L IL EW++ RRE Sbjct: 303 VIVPRSNRVDCDLLMNHLFASTDLEKSFRVNLNMIGLDNRPQVKGLVQILSEWISFRRET 362 Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431 + R +R+ + R+ IL+GLLIAYLN+DE+I IIRNED PK V+++RF LT+ Q DAI Sbjct: 363 VRSRLQYRLDKVLARLHILQGLLIAYLNLDEVIEIIRNEDDPKAVLMARFDLTDIQADAI 422 Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491 L+ +LR L KLEE +I+ E D L E+ K++ LL S ++ N + EI+ + F Sbjct: 423 LDTKLRHLAKLEEMKIRGEQDELEKERNKLEELLGSERRLNNLLKKEIKADADKFGDD-- 480 Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551 RR+ E A KA ++ ++ E ITVV+S +GWIR K H VD +L++K GD+ Sbjct: 481 ---RRSPLVEREEA-KALTERDLMPSEAITVVLSEKGWIRHAKGHDVDCQSLNYKAGDNY 536 Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611 + + + L +DG++Y+L + L S RG GE I +++ I + + Sbjct: 537 LTHACGKSNQQAVFLGSDGRSYSLESHTLPSARGQGEPITGRLNVAEGTTIRQVVMGEED 596 Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVAVVGENR 668 LV S G F+ + ++++ R GK + + ++ +++ + D + + Sbjct: 597 QLWLVGSDAGYGFVCKGDDLLSKNRSGKALINLPENSEVMTPQVIADLDNDEILAITNQG 656 Query: 669 KLLIFSIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTWIDSAGRSYNR 721 ++L+F I +P++S+GKG ++ ++ +S+++ +T + + R Sbjct: 657 RMLLFPIKDLPQLSKGKGNKIINIPAAKAKTREEVLSNLMVLPQGASIT-LYAGKRKLGL 715 Query: 722 SENDLLGWLGKRGGVGSLVPKGFPR 746 +DL + G+RG G+L+P+G R Sbjct: 716 KVSDLDNFRGERGRRGALLPRGLQR 740 >gi|15642427|ref|NP_232060.1| DNA topoisomerase IV subunit A [Vibrio cholerae O1 biovar El Tor str. N16961] gi|147674657|ref|YP_001217931.1| DNA topoisomerase IV subunit A [Vibrio cholerae O395] gi|153823960|ref|ZP_01976627.1| topoisomerase IV, subunit A [Vibrio cholerae B33] gi|229507510|ref|ZP_04397015.1| topoisomerase IV subunit A [Vibrio cholerae BX 330286] gi|229512294|ref|ZP_04401773.1| topoisomerase IV subunit A [Vibrio cholerae B33] gi|229519431|ref|ZP_04408874.1| topoisomerase IV subunit A [Vibrio cholerae RC9] gi|229607016|ref|YP_002877664.1| DNA topoisomerase IV subunit A [Vibrio cholerae MJ-1236] gi|254849554|ref|ZP_05238904.1| topoisomerase IV [Vibrio cholerae MO10] gi|255746898|ref|ZP_05420843.1| topoisomerase IV subunit A [Vibrio cholera CIRS 101] gi|262168410|ref|ZP_06036107.1| topoisomerase IV subunit A [Vibrio cholerae RC27] gi|297581054|ref|ZP_06942979.1| topoisomerase IV [Vibrio cholerae RC385] gi|9657005|gb|AAF95573.1| topoisomerase IV, subunit A [Vibrio cholerae O1 biovar El Tor str. N16961] gi|126518519|gb|EAZ75742.1| topoisomerase IV, subunit A [Vibrio cholerae B33] gi|146316540|gb|ABQ21079.1| topoisomerase IV, subunit A [Vibrio cholerae O395] gi|227014322|gb|ACP10532.1| topoisomerase IV, subunit A [Vibrio cholerae O395] gi|229344120|gb|EEO09095.1| topoisomerase IV subunit A [Vibrio cholerae RC9] gi|229352259|gb|EEO17200.1| topoisomerase IV subunit A [Vibrio cholerae B33] gi|229355015|gb|EEO19936.1| topoisomerase IV subunit A [Vibrio cholerae BX 330286] gi|229369671|gb|ACQ60094.1| topoisomerase IV subunit A [Vibrio cholerae MJ-1236] gi|254845259|gb|EET23673.1| topoisomerase IV [Vibrio cholerae MO10] gi|255735300|gb|EET90700.1| topoisomerase IV subunit A [Vibrio cholera CIRS 101] gi|262023302|gb|EEY42006.1| topoisomerase IV subunit A [Vibrio cholerae RC27] gi|297534880|gb|EFH73716.1| topoisomerase IV [Vibrio cholerae RC385] Length = 761 Score = 533 bits (1374), Expect = e-149, Method: Compositional matrix adjust. Identities = 288/744 (38%), Positives = 454/744 (61%), Gaps = 23/744 (3%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 + V+ + LR E+ YL Y++ I +RA+P + DG KPV RRII+AMSE+GL A +KK Sbjct: 8 DGVEQLPLRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSASAKYKK 67 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTE 133 SAR VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S AA RYTE Sbjct: 68 SARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 127 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 A++++ AE++L + + VD++ ++ EP + P++ P++L NG +GIAVGMAT IP Sbjct: 128 AKLSKFAEILLSELGQGTVDWQPNFDGTMQEPKMLPARLPHILLNGVTGIAVGMATDIPP 187 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HNV+E+ +A + LIDNP + L++Y+ GPDFPT I+ + + YR GRG ++R Sbjct: 188 HNVREVADATIHLIDNPNAPLTDLMQYVKGPDFPTEAEIITPTVELEKIYRSGRGSIKMR 247 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRI 311 A WC E GS IV+T +P+QV ++L+E+IA + AK++P++ED+RDES + RI Sbjct: 248 AVWCKE----GS-DIVITALPHQVSGAKLLEQIAAQMRAKKLPMVEDLRDESDHENPTRI 302 Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371 V+ P++ +D DLLM +F +D+E F +N+N++ + PQV L IL EW++ RRE Sbjct: 303 VIVPRSNRVDCDLLMNHLFASTDLEKSFRVNLNMIGLDNRPQVKGLVQILSEWISFRRET 362 Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431 + R +R+ + R+ IL+GLLIAYLN+DE+I IIRNED PK V+++RF LT+ Q DAI Sbjct: 363 VRSRLQYRLDKVLARLHILQGLLIAYLNLDEVIEIIRNEDDPKAVLMARFDLTDIQADAI 422 Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491 L+ +LR L KLEE +I+ E D L E++K++ LL S ++ N + EI+ + F Sbjct: 423 LDTKLRHLAKLEEMKIRGEQDELEKERKKLEELLGSERRLNNLLKKEIKADADKFGDD-- 480 Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551 RR+ E A KA ++ ++ E ITVV+S +GWIR K H VD +L++K GD+ Sbjct: 481 ---RRSPLVEREEA-KALTERDLMPSEAITVVLSEKGWIRHAKGHDVDCQSLNYKAGDNY 536 Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611 + + + L +DG++Y+L + L S RG GE I +++ I + + Sbjct: 537 LTHACGKSNQQAVFLGSDGRSYSLESHTLPSARGQGEPITGRLNVAEGTTIRQVVMGEED 596 Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVAVVGENR 668 LV S G F+ + ++++ R GK + + ++ +++ + D + + Sbjct: 597 QLWLVGSDAGYGFVCKGDDLLSKNRSGKALINLPENSEVMTPQVIADLDNDEILAITNQG 656 Query: 669 KLLIFSIDQIPEMSRGKG---VRLQSYKDGGISDVIC--FKICEGLTWIDSAG-RSYNRS 722 ++L+F I +P++S+GKG + + + K +V+ + +G + AG R Sbjct: 657 RMLLFPIKDLPQLSKGKGNKIINIPAAKAKTREEVLSNLMVLPQGASITLYAGKRKLGLK 716 Query: 723 ENDLLGWLGKRGGVGSLVPKGFPR 746 +DL + G+RG G+L+P+G R Sbjct: 717 VSDLDNFRGERGRRGALLPRGLQR 740 >gi|229524415|ref|ZP_04413820.1| topoisomerase IV subunit A [Vibrio cholerae bv. albensis VL426] gi|229337996|gb|EEO03013.1| topoisomerase IV subunit A [Vibrio cholerae bv. albensis VL426] Length = 761 Score = 533 bits (1372), Expect = e-149, Method: Compositional matrix adjust. Identities = 287/744 (38%), Positives = 454/744 (61%), Gaps = 23/744 (3%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 + V+ + LR E+ YL Y++ I +RA+P + DG KPV RRII+AMSE+GL A +KK Sbjct: 8 DGVEQLPLRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSASAKYKK 67 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTE 133 SAR VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S AA RYTE Sbjct: 68 SARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 127 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 A++++ AE++L + + VD++ ++ EP + P++ P++L NG +GIAVGMAT IP Sbjct: 128 AKLSKFAEILLSELGQGTVDWQPNFDGTMQEPKMLPARLPHILLNGVTGIAVGMATDIPP 187 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HNV+E+ +A + LIDNP + L++Y+ GPDFPT I+ + + YR GRG ++R Sbjct: 188 HNVREVADATIHLIDNPNAPLTDLMQYVKGPDFPTEAEIITPTVELEKIYRSGRGSIKMR 247 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRI 311 A WC E GS IV+T +P+QV ++L+E+IA + AK++P++ED+RDES + RI Sbjct: 248 AVWCKE----GS-DIVITALPHQVSGAKLLEQIAAQMRAKKLPMVEDLRDESDHENPTRI 302 Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371 V+ P++ +D DLLM +F +D+E F +N+N++ + PQV L IL EW++ RRE Sbjct: 303 VIVPRSNRVDCDLLMNHLFASTDLEKSFRVNLNMIGLDNRPQVKGLVQILSEWISFRRET 362 Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431 + R +R+ + R+ +L+GLLIAYLN+DE+I IIRNED PK V+++RF LT+ Q DAI Sbjct: 363 VRSRLQYRLDKVLARLHVLQGLLIAYLNLDEVIEIIRNEDDPKAVLMARFDLTDIQADAI 422 Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491 L+ +LR L KLEE +I+ E D L E++K++ LL S ++ N + EI+ + F Sbjct: 423 LDTKLRHLAKLEEMKIRGEQDELEKERKKLEELLGSERRLNNLLKKEIKADADKFGDD-- 480 Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551 RR+ E A KA ++ ++ E ITVV+S +GWIR K H VD +L++K GD+ Sbjct: 481 ---RRSPLVEREEA-KALTERDLMPSEAITVVLSEKGWIRHAKGHDVDCQSLNYKAGDNY 536 Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611 + + + L +DG++Y+L + L S RG GE I +++ I + + Sbjct: 537 LTHACGKSNQQAVFLGSDGRSYSLESHTLPSARGQGEPITGRLNVAEGTTIRQVVMGEED 596 Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVAVVGENR 668 LV S G F+ + ++++ R GK + + ++ +++ + D + + Sbjct: 597 QLWLVGSDAGYGFVCKGDDLLSKNRSGKALINLPENSEVMTPQVIADLDNDEILAITNQG 656 Query: 669 KLLIFSIDQIPEMSRGKG---VRLQSYKDGGISDVIC--FKICEGLTWIDSAG-RSYNRS 722 ++L+F I +P++S+GKG + + + K +V+ + +G + AG R Sbjct: 657 RMLLFPIKDLPQLSKGKGNKIINIPAAKAKTREEVLSNLMVLPQGASITLYAGKRKLGLK 716 Query: 723 ENDLLGWLGKRGGVGSLVPKGFPR 746 +DL + G+RG G+L+P+G R Sbjct: 717 VSDLDNFRGERGRRGALLPRGLQR 740 >gi|229514056|ref|ZP_04403518.1| topoisomerase IV subunit A [Vibrio cholerae TMA 21] gi|229349237|gb|EEO14194.1| topoisomerase IV subunit A [Vibrio cholerae TMA 21] Length = 761 Score = 533 bits (1372), Expect = e-149, Method: Compositional matrix adjust. Identities = 285/745 (38%), Positives = 454/745 (60%), Gaps = 25/745 (3%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 + V+ + LR E+ YL Y++ I +RA+P + DG KPV RRII+AMSE+GL A +KK Sbjct: 8 DGVEQLPLRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSASAKYKK 67 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTE 133 SAR VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S AA RYTE Sbjct: 68 SARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 127 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 A++++ AE++L + + VD++ ++ EP + P++ P++L NG +GIAVGMAT IP Sbjct: 128 AKLSKFAEILLSELGQGTVDWQPNFDGTMQEPKMLPARLPHILLNGVTGIAVGMATDIPP 187 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HNV+E+ +A + LIDNP + L++Y+ GPDFPT I+ + + YR GRG ++R Sbjct: 188 HNVREVADATIHLIDNPNAPLTDLMQYVKGPDFPTEAEIITPTVELEKIYRSGRGSIKMR 247 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRI 311 A WC E GS IV+T +P+QV ++L+E+IA + AK++P++ED+RDES + RI Sbjct: 248 AVWCKE----GS-DIVITALPHQVSGAKLLEQIAAQMRAKKLPMVEDLRDESDHENPTRI 302 Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371 V+ P++ +D DLLM +F +D+E F +N+N++ + PQV L IL EW++ RRE Sbjct: 303 VIVPRSNRVDCDLLMNHLFASTDLEKSFRVNLNMIGLDNRPQVKGLVQILSEWISFRRET 362 Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431 + R +R+ + R+ IL+GLLIAYLN+DE+I IIRNED PK V+++RF LT+ Q DAI Sbjct: 363 VRSRLQYRLDKVLARLHILQGLLIAYLNLDEVIEIIRNEDDPKAVLMARFDLTDLQADAI 422 Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491 L+ +LR L KLEE +I+ E D L E++K++ LL S ++ N + EI+ + F Sbjct: 423 LDTKLRHLAKLEEMKIRGEQDELERERKKLEELLGSERRLNNLLKKEIKADADKFGDD-- 480 Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551 RR+ E A KA ++ ++ E ITVV+S +GWIR K H VD +L++K GD+ Sbjct: 481 ---RRSPLVEREEA-KALTERDLMPSEAITVVLSEKGWIRHAKGHDVDCQSLNYKAGDNY 536 Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611 + + + L +DG++Y+L + L S RG GE I +++ I + + Sbjct: 537 LTHACGKSNQQAVFLGSDGRSYSLESHTLPSARGQGEPITGRLNVAEGTTIRQVVMGEED 596 Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVAVVGENR 668 LV S G F+ + ++++ R GK + + ++ +++ + D + + Sbjct: 597 QLWLVGSDAGYGFVCKGDDLLSKNRSGKALINLPENSEVMTPQVIADLDNDEILAITNQG 656 Query: 669 KLLIFSIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTWIDSAGRSYNR 721 ++L+F I +P++S+GKG ++ ++ +S+++ +T + + R Sbjct: 657 RMLLFPIKDLPQLSKGKGNKIINIPAAKAKTREEVLSNLMVLPQGASIT-LYAGKRKLGL 715 Query: 722 SENDLLGWLGKRGGVGSLVPKGFPR 746 +DL + G+RG G+L+P+G R Sbjct: 716 KVSDLDNFRGERGRRGALLPRGLQR 740 >gi|253686737|ref|YP_003015927.1| DNA topoisomerase IV, A subunit [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251753315|gb|ACT11391.1| DNA topoisomerase IV, A subunit [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 756 Score = 532 bits (1370), Expect = e-148, Method: Compositional matrix adjust. Identities = 284/752 (37%), Positives = 458/752 (60%), Gaps = 35/752 (4%) Query: 12 LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71 + + ++++LR E YL Y++ I +RA+P + DG KPV RRI++AMSE+GL+ A Sbjct: 4 MTHDGAESLALRTFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAK 63 Query: 72 FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYR 130 FKKSAR VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S AA R Sbjct: 64 FKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMR 123 Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190 YTE+R+++ AE++L + + VD+ ++ EP + P++ PN+L NGT+GIAVGMAT Sbjct: 124 YTESRLSKYAEILLSELGQGTVDYTPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATD 183 Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250 IP HNV+E+ AA+ L++NP+ S++ LL+++ GPDFPT I+ R+ + + Y+ GRG Sbjct: 184 IPPHNVREVAAAAVMLLENPKASLDDLLQHVQGPDFPTEAEIITPRDEVRKLYQNGRGSV 243 Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-- 308 R+RA W E+ +V+T +P+QV ++++E+IA + AK++P++ED+RDES + Sbjct: 244 RMRAVWKKED-----GDVVITALPHQVSGAKVLEQIASQMRAKKLPMVEDLRDESDHENP 298 Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368 R+VL P++ +D D +M +F +D+E + +NMN++ + P V L IL EWL R Sbjct: 299 TRLVLVPRSNRIDMDQVMNHLFATTDLEKSYRVNMNMIGLDGRPSVKGLVEILSEWLVFR 358 Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQV 428 R+ + RR ++R++ + +R+ IL+GLLIA+LNIDE+I IIR ED+PKPV++ +FSL+E Q Sbjct: 359 RDTVCRRLNYRLEKVLKRLHILEGLLIAFLNIDEVIHIIRTEDEPKPVLMRQFSLSETQA 418 Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488 +AIL L+LR L KLEE +I+ E D+L E++++ +LL S ++ N I EI+ + + Sbjct: 419 EAILELKLRHLAKLEEMKIRGEQDDLAKERDQLQALLASDRKLSNLIKKEIQADAQTYGD 478 Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548 RR+ E S A KA + + EP+T+V+S GW+RS K H +D + L +K G Sbjct: 479 D-----RRSPLYERSEA-KAMSEHDFVPSEPVTIVLSEMGWVRSAKGHDIDPAGLSYKAG 532 Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608 DS + A + ++ + + G++Y L L S RG GE + + I + Sbjct: 533 DSFRAAAKGKSNQPVVFIDSTGRSYALDPITLPSARGQGEPLTGKLTPPPGATIEQVLMA 592 Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH---VAVVG 665 LL+ S G F+ ++++A R GK + + K +++ GD +A+ Sbjct: 593 ADDQPLLMASDAGYGFVCTFNDLVARNRAGKAIITLPDNAKALAPMEIHGDDNLLMAITA 652 Query: 666 ENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWI------DSAGRSY 719 R +L+F + +P++S+GKG ++ S IS + + LTW+ S + Sbjct: 653 AGR-MLLFPVSDLPQLSKGKGNKIVS-----ISSADFAEGKDRLTWLYLLPPQASVTLYF 706 Query: 720 NRSE-----NDLLGWLGKRGGVGSLVPKGFPR 746 + + N+L + G+RG G+L+ +G R Sbjct: 707 GKRKLVLRPNELQKYQGERGRKGTLL-RGLQR 737 >gi|227112793|ref|ZP_03826449.1| DNA topoisomerase IV subunit A [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 756 Score = 531 bits (1369), Expect = e-148, Method: Compositional matrix adjust. Identities = 283/752 (37%), Positives = 458/752 (60%), Gaps = 35/752 (4%) Query: 12 LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71 + + ++++LR E YL Y++ I +RA+P + DG KPV RRI++AMSE+GL+ A Sbjct: 4 MTHDGAESLALRTFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAK 63 Query: 72 FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYR 130 FKKSAR VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S AA R Sbjct: 64 FKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMR 123 Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190 YTE+R+++ AE++L + + VD+ ++ EP + P++ PN+L NGT+GIAVGMAT Sbjct: 124 YTESRLSKYAEVLLSELGQGTVDYTPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATD 183 Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250 IP HNV+E+ AA+ L++NP+ S+++LL+++ GPDFPT I+ R+ + + Y+ GRG Sbjct: 184 IPPHNVREVAAAAVMLLENPKASLDELLQHVQGPDFPTEAEIITPRDEVRKLYQNGRGSV 243 Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-- 308 R+RA W E+ +V+T +P+QV ++++E+IA + AK++P++ED+RDES + Sbjct: 244 RMRAVWKKED-----GDVVITALPHQVSGAKVLEQIASQMRAKKLPMVEDLRDESDHENP 298 Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368 R+VL P++ +D D +M +F +D+E + +NMN++ + P V L IL EWL R Sbjct: 299 TRLVLVPRSNRIDMDQVMNHLFATTDLEKSYRVNMNMIGLDGRPSVKGLVEILSEWLVFR 358 Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQV 428 R+ + RR ++R++ + +R+ IL+GLLIA+LNIDE+I IIR ED+PKPV++ +FSL+E Q Sbjct: 359 RDTVCRRLNYRLEKVLKRLHILEGLLIAFLNIDEVIHIIRTEDEPKPVLMRQFSLSETQA 418 Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488 +AIL L+LR L KLEE +I+ E D+L E++++ +LL S ++ N I EI+ + + Sbjct: 419 EAILELKLRHLAKLEEMKIRGEQDDLAKERDQLQALLASDRKLSNLIKKEIQADAQAYGD 478 Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548 RR+ E A KA + + EP+T+V+S GW+RS K H +D + L +K G Sbjct: 479 E-----RRSPLHERGEA-KAMSEHDFVPSEPVTIVLSEMGWVRSAKGHDIDPAGLSYKAG 532 Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608 DS + A + ++ + + G++Y L L S RG GE + + I + Sbjct: 533 DSFRAAAKGKSNQPVVFIDSTGRSYALDPITLPSARGQGEPLTGKLTPPPGATIEQVLMA 592 Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH---VAVVG 665 LL+ S G F+ ++++A R GK + + K +++ GD +A+ Sbjct: 593 ADDQPLLMASDAGYGFVCTFNDLVARNRAGKAIITLPDNAKAFAPIEIKGDDNLLMAITA 652 Query: 666 ENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWI------DSAGRSY 719 R +L+F + +P++S+GKG ++ S IS + + LTW+ S + Sbjct: 653 AGR-MLLFPVSDLPQLSKGKGNKIVS-----ISSADFAEGKDRLTWLYLLPPQASVTLYF 706 Query: 720 NRSE-----NDLLGWLGKRGGVGSLVPKGFPR 746 + + N+L + G+RG G+L+ +G R Sbjct: 707 GKRKLVLRPNELQKYQGERGRKGTLL-RGLQR 737 >gi|332162974|ref|YP_004299551.1| DNA topoisomerase IV subunit A [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325667204|gb|ADZ43848.1| DNA topoisomerase IV subunit A [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330862272|emb|CBX72433.1| DNA topoisomerase 4 subunit A [Yersinia enterocolitica W22703] Length = 758 Score = 531 bits (1367), Expect = e-148, Method: Compositional matrix adjust. Identities = 288/746 (38%), Positives = 446/746 (59%), Gaps = 22/746 (2%) Query: 12 LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71 L + + + L E YL Y++ I +RA+P + DG KPV RRII+AMSE+GL+ A Sbjct: 4 LTHDGAERLPLHTFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAMSELGLNNSAK 63 Query: 72 FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYR 130 FKKSAR VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S AA R Sbjct: 64 FKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMR 123 Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190 YTE+R+++ AE++L + + VD+ ++ EP + P++ PN+L NGT+GIAVGMAT Sbjct: 124 YTESRLSKYAEVLLGELGQGTVDWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATD 183 Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250 IP HNV+EI +A LALID P S+E+LLE++ GPDFPT I+ R I + Y+ GRG Sbjct: 184 IPPHNVREIAQAVLALIDKPTSSLEELLEFVQGPDFPTEAEIITPRNEIRKIYQSGRGSV 243 Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-- 308 R+RA W E+ GS V+T +P+QV ++++E+IA + AK++P++ED+RDES + Sbjct: 244 RMRALWKKED---GS--AVITALPHQVSGAKVLEQIASQMRAKKLPMVEDLRDESDHENP 298 Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368 R+V+ P+ +D D +M +F +D+E + +NMN++ + P V L IL EWL R Sbjct: 299 TRLVIVPRTNRVDLDQVMNHLFATTDLERSYRINMNMIGLDHRPTVKGLVEILTEWLVFR 358 Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQV 428 R+ + R ++R++ + +R+ IL+GLLIA+LNIDE+I IIR ED+PKP+++ RF+++E Q Sbjct: 359 RQTVRNRLNYRLEKVLKRLHILEGLLIAFLNIDEVIHIIRTEDEPKPLLMQRFAISETQA 418 Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488 +AIL L+LR L KLEE +I+ E D L E++++ +LL S ++ I EI+ + Sbjct: 419 EAILELKLRHLAKLEEMKIRGEQDELAKERDQLQALLASERKLNTLIKKEIQADAAAYGD 478 Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548 RR+ E A KA + ++ EP+T+V+S GW+RS K H +D S L +K G Sbjct: 479 D-----RRSPLTEREEA-KAMSEHDIVPSEPVTIVLSEMGWVRSAKGHDIDPSGLSYKAG 532 Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608 DS + A + ++ + + G++Y L L S RG GE + + L +I + Sbjct: 533 DSFRAAARGKSNQPVVFMDSTGRSYALDPLTLPSARGQGEPLTGKLTLPPGANIEHVLMA 592 Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--DHVAVVGE 666 KLL+ S G F+ ++++A R GKT + + K +++ G D + + Sbjct: 593 ADDQKLLMASDAGYGFVCTFNDLVAKNRAGKTMITLPENAKALPPLEIYGSDDMLLSITA 652 Query: 667 NRKLLIFSIDQIPEMSRGKGVRLQSYK----DGGISDVICFKICEGLTWI--DSAGRSYN 720 ++L+F + +PE+S+GKG ++ S G ++ + T I R Sbjct: 653 AGRMLMFPVADLPELSKGKGNKIVSIPAADAAAGKDRLVWLFVLPPQTSITLHFGKRKLT 712 Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPR 746 DL + +RG GS +P+G R Sbjct: 713 LRPEDLQKFRAERGRKGSPLPRGLQR 738 >gi|261855829|ref|YP_003263112.1| DNA topoisomerase IV, subunit alpha [Halothiobacillus neapolitanus c2] gi|261836298|gb|ACX96065.1| DNA topoisomerase IV, A subunit [Halothiobacillus neapolitanus c2] Length = 758 Score = 531 bits (1367), Expect = e-148, Method: Compositional matrix adjust. Identities = 287/727 (39%), Positives = 436/727 (59%), Gaps = 20/727 (2%) Query: 27 EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86 E+ YL YA+ I +RA+P + DG KPV RRI++AMSE+GL + KKSAR VG+VIGK Sbjct: 36 EQAYLNYAMYVILDRALPSVCDGLKPVQRRIVYAMSELGLTAASKHKKSARTVGDVIGKF 95 Query: 87 HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQVAELILQ 145 HPHGD + Y+++V +AQPF RYPLI GQGNFG+ D S AA RYTE+R+T A +L Sbjct: 96 HPHGDSACYEAMVLMAQPFSYRYPLIDGQGNFGSPDDPKSFAAMRYTESRLTAYAHSLLA 155 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 ++ VD++ ++ EP + P++ PN+L NG GIAVG++T IP HN++E+ A +A Sbjct: 156 EAEQGTVDWQPNFDGTLEEPTLLPARLPNVLLNGGMGIAVGLSTDIPPHNLREVVAATIA 215 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265 L+D PE +++ L ++ GPDFPT I+ + I++ YR G G R RAR+ VE+ Sbjct: 216 LLDEPESTVDDLCRHLRGPDFPTEAEIITPPDEIMQMYRTGTGSVRQRARYEVEQ----- 270 Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFPKNRSLDPD 323 I++T +P+QV S+++E+IA + AK++PL+ D+RDES + R+V+ P++R +D + Sbjct: 271 GEIIITALPFQVSGSKILEQIAAQMNAKKLPLVTDLRDESDHEAPTRLVIIPRSRQVDAE 330 Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383 LM +F +D+E + +NMNV+++ P+VM L +L EWL RR+ L RR +R+ + Sbjct: 331 ALMAHLFATTDLEKSYRVNMNVIALDGRPRVMNLKDLLSEWLQFRRQTLTRRIQWRLAKV 390 Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLE 443 + R+EIL GLLIA+LNIDE+IA+IR D+PK +++RF LTE Q +AIL +RLR L KLE Sbjct: 391 ENRLEILAGLLIAFLNIDEVIAVIREADEPKAELIARFDLTERQAEAILEIRLRQLAKLE 450 Query: 444 EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVS 503 E IK E L+AE E + LL + N + E+++ + + + RR+ V+ Sbjct: 451 EIAIKKEQGELMAESEILRGLLADESRLRNLLRDELQDDAQKYGDA-----RRSRL--VT 503 Query: 504 R-ADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDR 562 R A +A + A+I EP+TVV+S GWIR+ K H VD AL +K GD + ++ +T Sbjct: 504 RGAAQALAETALISSEPVTVVLSKNGWIRAAKGHDVDPVALSYKAGDGYLVHMNGKSTQS 563 Query: 563 ILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGN 622 ++LL G+AYTL A +L S RG GE + + + D +L+ S G Sbjct: 564 VILLDDTGRAYTLAAHSLPSARGQGEPLTGRLSPPTGAQFNQMVMADDKDAVLLWQSGGY 623 Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--DHVAVVGENRKLLIFSIDQIPE 680 FI E+++ R GK + + + +++ +A + +LI +IP+ Sbjct: 624 GFITPFEELLSRQRAGKVMVSLQDGATLGAPIRLDDQVQRIAFASSDGHVLILERAEIPQ 683 Query: 681 MSRGKGVRLQSYKDGGISDVICFKI-CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSL 739 +S+G+G +L K G C + EGL + S RS + D + G R G + Sbjct: 684 LSKGRGNKLMGLKSGFTLIAACALVEGEGLK-VQSGARSVTLRDVDFDNYGGARASRGRI 742 Query: 740 VPKGFPR 746 +P+GF R Sbjct: 743 LPRGFQR 749 >gi|192362361|ref|YP_001983586.1| DNA topoisomerase IV subunit A [Cellvibrio japonicus Ueda107] gi|190688526|gb|ACE86204.1| DNA topoisomerase IV, A subunit [Cellvibrio japonicus Ueda107] Length = 752 Score = 530 bits (1366), Expect = e-148, Method: Compositional matrix adjust. Identities = 281/743 (37%), Positives = 452/743 (60%), Gaps = 23/743 (3%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 +SL+ E+ YL Y++ I +RA+P + DG KPV RRI++AMSE+GL A +KKSAR V Sbjct: 14 ISLKDYTEKAYLDYSMYVILDRALPHIGDGLKPVQRRIVYAMSELGLKASAKYKKSARTV 73 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQ 138 G+VIGK HPHGD + Y+++V +AQPF RY L+ GQGN+G+ D S AA RYTE+R+T+ Sbjct: 74 GDVIGKFHPHGDSAAYEAMVLMAQPFSYRYTLVDGQGNWGSPDDPKSFAAMRYTESRLTK 133 Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198 +E++L + + VD++ ++ EP VFP++ PNLL NGT+GIAVGMAT IP HN++E Sbjct: 134 YSEVLLDELGQGTVDWQPNFDGTLDEPTVFPARVPNLLLNGTTGIAVGMATDIPPHNLRE 193 Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258 + A + L+DNP+ S+ L ++++GPD PT I+ R+ +++ Y GRG R+RA W Sbjct: 194 VVNACVHLLDNPQASVTDLCQFVLGPDMPTEAEIISPRDELIKMYETGRGSVRMRAVWQK 253 Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFPK 316 +E S IV+T +P+QV ++++E+IA + AK++P++ D+RDES + R+V+ P+ Sbjct: 254 DE---ESGDIVITALPHQVSGAKILEQIAAQMQAKKLPMVADLRDESDHENPTRLVVVPR 310 Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376 + +D + +M+ +F +++E + +NMNV+ + P V L IL EWL+ R RR Sbjct: 311 SNRVDLEQVMQHLFATTELERTYRVNMNVIGIDGRPAVKSLSKILGEWLSFRTVTTRRRL 370 Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRL 436 +R+ ++RR+ +L+GLLIA+LN+DE+I IIR ED PK ++ RF LTE+Q + IL +L Sbjct: 371 QYRLDKVERRLHLLQGLLIAFLNLDEVIRIIREEDDPKAELMKRFGLTEDQTEYILETKL 430 Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496 R L +LEE +I+ E +L E++++ S+L S + N + E+ + E + RR Sbjct: 431 RQLARLEEMKIRGEQSDLEKERDQLQSVLGSAVKLKNLVRKELLQAAEQYGDD-----RR 485 Query: 497 TTFCEVSRADKATLQQA-MIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555 + V RA+ L + ++ EPITVVIS++GWIRS K H +D + L +K GDS K A+ Sbjct: 486 SPI--VVRAEAQALSETELMSVEPITVVISDKGWIRSAKGHDIDPTGLSYKAGDSFKFAV 543 Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615 H + ++LL + G++Y +PA NL S RG GE + I+ + ++L Sbjct: 544 HGKSNQNVILLDSTGRSYAIPAHNLPSARGQGEPLSGRINPPSGATFEGVLMGADDQRVL 603 Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVAVVGENRKLLI 672 + S G FI + ++ + + GK L + ++ +L+ +A V + +LL+ Sbjct: 604 LASDAGYGFIAKLDDLASKNKSGKALLTLPDNAQVLPPQLINDPAQALLAAVSNDGRLLV 663 Query: 673 FSIDQIPEMSRGKGVRLQSYKDGGISD-----VICFKICEG-LTWIDSAGRSYNRSENDL 726 F + ++PE++RGKG ++ + + V I G + + S R+ DL Sbjct: 664 FPVTELPELARGKGNKIMNIPSARAAAREEFVVAVSVILPGQVLTLYSGKRTITLKLGDL 723 Query: 727 LGWLGKRGGVGSLVPKGFPRSGK 749 + G+RG G+ +P+GF + K Sbjct: 724 EHYKGERGRRGNKLPRGFQKVDK 746 >gi|123443841|ref|YP_001007812.1| DNA topoisomerase IV subunit A [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122090802|emb|CAL13684.1| DNA topoisomerase IV subunit A [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 758 Score = 530 bits (1366), Expect = e-148, Method: Compositional matrix adjust. Identities = 290/747 (38%), Positives = 448/747 (59%), Gaps = 24/747 (3%) Query: 12 LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71 L + + + L E YL Y++ I +RA+P + DG KPV RRII+AMSE+GL+ A Sbjct: 4 LTHDGAERLPLHTFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAMSELGLNNSAK 63 Query: 72 FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYR 130 FKKSAR VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S AA R Sbjct: 64 FKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMR 123 Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190 YTE+R+++ AE++L + + VD+ ++ EP + P++ PN+L NGT+GIAVGMAT Sbjct: 124 YTESRLSKYAEVLLGELGQGTVDWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATD 183 Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250 IP HNV+EI +A LALID P S+E+LLE++ GPDFPT I+ R I + Y+ GRG Sbjct: 184 IPPHNVREIAQAVLALIDKPTSSLEELLEFVQGPDFPTEAEIITPRNEIRKIYQSGRGSV 243 Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-- 308 R+RA W E+ GS V+T +P+QV ++++E+IA + AK++P++ED+RDES + Sbjct: 244 RMRALWKKED---GS--AVITALPHQVSGAKVLEQIASQMRAKKLPMVEDLRDESDHENP 298 Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368 R+V+ P+ +D D +M +F +D+E + +NMN++ + P V L IL EWL R Sbjct: 299 TRLVIVPRTNRVDLDQVMNHLFATTDLERSYRINMNMIGLDHRPTVKGLVEILTEWLVFR 358 Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQV 428 R+ + R ++R++ + +R+ IL+GLLIA+LNIDE+I IIR ED+PKP+++ RF+++E Q Sbjct: 359 RQTVRNRLNYRLEKVLKRLHILEGLLIAFLNIDEVIHIIRTEDEPKPLLMQRFAISETQA 418 Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488 +AIL L+LR L KLEE +I+ E D L E++++ +LL S ++ I KEI + Sbjct: 419 EAILELKLRHLAKLEEMKIRGEQDELAKERDQLQALLASERKLNTLIK------KEILAD 472 Query: 489 STDLG-RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKE 547 + G RR+ E A KA + ++ EP+T+V+S GW+RS K H +D S L +K Sbjct: 473 AAAYGDDRRSPLTEREEA-KAMSEHDIVPSEPVTIVLSEMGWVRSAKGHDIDPSGLSYKA 531 Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV 607 GDS + A + ++ + + G++Y L L S RG GE + + L +I + Sbjct: 532 GDSFRAAACGKSNQPVVFMDSTGRSYALDPLTLPSARGQGEPLTGKLTLPPGANIEHVLM 591 Query: 608 YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--DHVAVVG 665 KLL+ S G F+ ++++A R GKT + + K +++ G D + + Sbjct: 592 AADDQKLLMASDAGYGFVCTFNDLVAKNRAGKTMITLPENAKALPPLEIYGPDDMLLSIT 651 Query: 666 ENRKLLIFSIDQIPEMSRGKGVRLQSYKDG----GISDVICFKICEGLTWI--DSAGRSY 719 ++L+F + +PE+S+GKG ++ S G ++ + T I R Sbjct: 652 AAGRMLMFPVADLPELSKGKGNKIVSIPAADAATGKDRLVWLFVLPPQTSITLHFGKRKL 711 Query: 720 NRSENDLLGWLGKRGGVGSLVPKGFPR 746 DL + +RG GS +P+G R Sbjct: 712 TLRPEDLQKFRAERGRKGSPLPRGLQR 738 >gi|94500373|ref|ZP_01306905.1| DNA topoisomerase IV subunit A [Oceanobacter sp. RED65] gi|94427408|gb|EAT12386.1| DNA topoisomerase IV subunit A [Oceanobacter sp. RED65] Length = 748 Score = 530 bits (1366), Expect = e-148, Method: Compositional matrix adjust. Identities = 285/746 (38%), Positives = 452/746 (60%), Gaps = 21/746 (2%) Query: 8 NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67 N + E+ V+ SLR E YL Y++ I +RA+P + DG KPV RRI++AMSE+GL Sbjct: 2 NDIVIGEDGVERQSLRDYTENAYLNYSMYVIMDRALPHIGDGLKPVQRRIVYAMSELGLK 61 Query: 68 FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSA 126 G+ +KKSAR VG+VIGK HPHGD + Y+++V +AQ F RYPL+ GQGN+G+ D S Sbjct: 62 AGSKYKKSARTVGDVIGKFHPHGDSACYEAMVLMAQSFSYRYPLVDGQGNWGSPDDPKSF 121 Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186 AA RYTE+++T+ AE++L + + VD++ ++ EP PS+ PN+L NGT+GIAVG Sbjct: 122 AAMRYTESKLTKYAEVLLSELGQGTVDWQPNFDGTMDEPCTLPSRLPNVLLNGTTGIAVG 181 Query: 187 MATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLG 246 MAT IP HN++E+ A + ++DNP+ E+LL+YI GPDFPT I+ + + + Y G Sbjct: 182 MATDIPQHNLREVANACIHMLDNPKADTEELLQYIPGPDFPTDAEIITPKADLQKMYHSG 241 Query: 247 RGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA 306 RG ++RA + E+ IV+T +P+Q ++++E+IA+ + K++P++ D+RDES Sbjct: 242 RGSVKMRAVYTRED-----GDIVITALPHQASGAKVLEQIADQMQKKKLPMVSDLRDESD 296 Query: 307 ED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364 + R+V+ PK+ +D + LM +F +D+E + +N+N++ + +PQV LD I+KEW Sbjct: 297 HENPTRLVITPKSNRVDVNQLMSHLFATTDLEKSYRVNLNMIGIDGLPQVKSLDMIIKEW 356 Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLT 424 L +R + RR R+ + R+ IL GLL+A+LNIDE+I IIR+ED+PK ++ RF L+ Sbjct: 357 LEYRITTVRRRLQHRLDKVLARLHILDGLLVAFLNIDEVIEIIRHEDEPKQELIKRFGLS 416 Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484 + Q +AIL L+LR L KLEE +IK E D L E+++++ L S ++ + EI E Sbjct: 417 DKQAEAILELKLRHLAKLEEMKIKGEQDELSKERDQLEKTLGSERRLKTLVKKEITADAE 476 Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQA-MIEKEPITVVISNRGWIRSLKSHSVDLSAL 543 + RR+ VSR + L + ++ +P+TVV+S +GWIR+ K H VD + L Sbjct: 477 TYGDD-----RRSPI--VSRDEAQALSEIDLMGADPVTVVMSEKGWIRAAKGHDVDGTGL 529 Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIV 603 +K GD I +A T + + L T G+AY++ L RG+GE + I+L Q I Sbjct: 530 QYKSGDKFLIQANAKTNQQAIFLDTGGRAYSVNIHGLPGARGYGEPVTGSINLASGQKIS 589 Query: 604 TAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---DH 660 T + + L+ S G FI + ++++ + GK L ++ + VKV+ D Sbjct: 590 TMVIGQPKDQYLMASEAGYGFITQYEDMVSKNKAGKALLNKPDDKAIHSPVKVSDVEQDW 649 Query: 661 VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKIC-EGLTWIDSAGRSY 719 V V +LL F + +P M++GKG ++ + G +I + EG I +AG+ + Sbjct: 650 VVAVSNEGRLLTFPVADLPVMAKGKGNKIINLGTSGDEVLIGISLMKEGDMLIVNAGKRH 709 Query: 720 NRSE-NDLLGWLGKRGGVGSLVPKGF 744 + + +DL + G+RG G+ +P+GF Sbjct: 710 VKMKFSDLEHYQGERGRRGNKLPRGF 735 >gi|318604202|emb|CBY25700.1| topoisomerase IV subunit A [Yersinia enterocolitica subsp. palearctica Y11] Length = 758 Score = 530 bits (1365), Expect = e-148, Method: Compositional matrix adjust. Identities = 288/746 (38%), Positives = 446/746 (59%), Gaps = 22/746 (2%) Query: 12 LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71 L + + + L E YL Y++ I +RA+P + DG KPV RRII+AMSE+GL+ A Sbjct: 4 LTHDGAERLPLHTFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAMSELGLNNSAK 63 Query: 72 FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYR 130 FKKSAR VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S AA R Sbjct: 64 FKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMR 123 Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190 YTE+R+++ AE++L + + VD+ ++ EP + P++ PN+L NGT+GIAVGMAT Sbjct: 124 YTESRLSKYAEVLLGELGQGTVDWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATD 183 Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250 IP HNV+EI +A LALID P S+E+LLE++ GPDFPT I+ R I + Y+ GRG Sbjct: 184 IPPHNVREIAQAVLALIDKPTSSLEELLEFVQGPDFPTEAEIITPRNEIRKIYQSGRGSV 243 Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-- 308 R+RA W E+ GS V+T +P+QV ++++E+IA + AK++P++ED+RDES + Sbjct: 244 RMRALWKKED---GS--AVITALPHQVSGAKVLEQIASQMRAKKLPMVEDLRDESDHENP 298 Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368 R+V+ P+ +D D +M +F +D+E + +NMN++ + P V L IL EWL R Sbjct: 299 TRLVIVPRTNRVDLDQVMNHLFATTDLERSYRINMNMIGLDHRPTVKGLVEILTEWLVFR 358 Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQV 428 R+ + R ++R++ + +R+ IL+GLLIA+LNIDE+I IIR ED+PKP+++ RF+++E Q Sbjct: 359 RQTVRNRLNYRLEKVLKRLHILEGLLIAFLNIDEVIHIIRTEDEPKPLLMQRFAISETQA 418 Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488 +AIL L+LR L KLEE +I+ E D L E++++ +LL S ++ I EI+ + Sbjct: 419 EAILELKLRHLAKLEEMKIRGEQDELAKERDQLQALLASERKLNTLIKKEIQADAAAYGD 478 Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548 RR+ E A KA + ++ EP+T+V+S GW+RS K H +D S L +K G Sbjct: 479 D-----RRSPLTEREEA-KAMSEHDIVPSEPVTIVLSEMGWVRSAKGHDIDPSGLSYKAG 532 Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608 DS + A + ++ + + G++Y L L S RG GE + + L +I + Sbjct: 533 DSFRAAARGKSNQPVVFMDSTGRSYALDPLTLPSARGQGEPLTGKLTLPPGANIEHVLMA 592 Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--DHVAVVGE 666 KLL+ S G F+ ++++A R GKT + + K +++ G D + + Sbjct: 593 ADDQKLLMASDVGYGFVCTFNDLVAKNRAGKTMITLPENAKALPPLEIYGSDDMLLSITA 652 Query: 667 NRKLLIFSIDQIPEMSRGKGVRLQSYK----DGGISDVICFKICEGLTWI--DSAGRSYN 720 ++L+F + +PE+S+GKG ++ S G ++ + T I R Sbjct: 653 AGRMLMFPVADLPELSKGKGNKIVSIPAADAAAGKDRLVWLFVLPPQTSITLHFGKRKLT 712 Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPR 746 DL + +RG GS +P+G R Sbjct: 713 LRPEDLQKFRAERGRKGSPLPRGLQR 738 >gi|261819693|ref|YP_003257799.1| DNA topoisomerase IV subunit A [Pectobacterium wasabiae WPP163] gi|261603706|gb|ACX86192.1| DNA topoisomerase IV, A subunit [Pectobacterium wasabiae WPP163] Length = 756 Score = 530 bits (1365), Expect = e-148, Method: Compositional matrix adjust. Identities = 283/752 (37%), Positives = 458/752 (60%), Gaps = 35/752 (4%) Query: 12 LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71 + + ++++LR E YL Y++ I +RA+P + DG KPV RRI++AMSE+GL+ A Sbjct: 4 MTHDGAESLALRTFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAK 63 Query: 72 FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYR 130 FKKSAR VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S AA R Sbjct: 64 FKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMR 123 Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190 YTE+R+++ AE++L + + VD+ ++ EP + P++ PN+L NGT+GIAVGMAT Sbjct: 124 YTESRLSKYAEVLLSELGQGTVDYTPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATD 183 Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250 IP HNV+EI AA+ L++NP+ S++ LL+++ GPDFPT I+ R+ + + Y+ GRG Sbjct: 184 IPPHNVREIAAAAVMLLENPKASLDDLLQHVQGPDFPTEAEIITPRDEVRKLYQNGRGSV 243 Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-- 308 R+RA W E+ +V+T +P+QV ++++E+IA + AK++P++ED+RDES + Sbjct: 244 RMRAVWKKED-----GDVVITALPHQVSGAKVLEQIASQMRAKKLPMVEDLRDESDHENP 298 Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368 R+VL P++ +D D +M +F +D+E + +NMN++ + P V L IL EWL R Sbjct: 299 TRLVLVPRSNRIDMDQVMNHLFATTDLEKSYRVNMNMIGLDGRPSVKGLVEILSEWLVFR 358 Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQV 428 R+ + RR ++R++ + +R+ IL+GLLIA+LNIDE+I IIR ED+PKPV++ +FSL+E Q Sbjct: 359 RDTVCRRLNYRLEKVLKRLHILEGLLIAFLNIDEVIHIIRTEDEPKPVLMRQFSLSETQA 418 Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488 +AIL L+LR L KLEE +I+ E D+L E++++ +LL S ++ N I EI+ + + Sbjct: 419 EAILELKLRHLAKLEEMKIRGEQDDLAKERDQLQALLASERKLSNLIKKEIQSDAQAYGD 478 Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548 RR+ E S + KA + + EP+T+V+S GW+RS K H +D + L +K G Sbjct: 479 D-----RRSPLHERSES-KAMSEHDFVPSEPVTIVLSEMGWVRSAKGHDIDPTGLSYKAG 532 Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608 DS + + ++ + + G++Y L +L S RG GE + + I + Sbjct: 533 DSFRAVAKGKSNQPVVFIDSTGRSYALDPISLPSARGQGEPLTGKLTPPPGATIEQVLMA 592 Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH---VAVVG 665 LL+ S G F+ ++++A R GK + + K +++ GD +A+ Sbjct: 593 ADDQPLLMASDAGYGFVCTFNDLVARNRAGKAIITLPDNAKALTPIEIKGDDNLLMAITA 652 Query: 666 ENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWI------DSAGRSY 719 R +L+F + +P++S+GKG ++ S IS + + LTW+ S + Sbjct: 653 AGR-MLLFPVSDLPQLSKGKGNKIVS-----ISSADFAEGKDRLTWLYLLPPQASVTLYF 706 Query: 720 NRSE-----NDLLGWLGKRGGVGSLVPKGFPR 746 + + N+L + G+RG G+L+ +G R Sbjct: 707 GKRKLVLRPNELQKYQGERGRKGTLL-RGLQR 737 >gi|83648063|ref|YP_436498.1| DNA topoisomerase IV subunit A [Hahella chejuensis KCTC 2396] gi|83636106|gb|ABC32073.1| DNA topoisomerase IV, A subunit [Hahella chejuensis KCTC 2396] Length = 759 Score = 530 bits (1365), Expect = e-148, Method: Compositional matrix adjust. Identities = 276/749 (36%), Positives = 455/749 (60%), Gaps = 23/749 (3%) Query: 10 NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69 + + EE ++ L+ E+ YL Y++ I +RA+P + DG KPV RRI++AMSE+GL Sbjct: 2 SMMFEEGIERRPLKEYTEKAYLDYSMYVILDRALPHIGDGLKPVQRRIVYAMSELGLSAA 61 Query: 70 AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAA 128 A KKSAR VG+V+GK HPHGD + Y+++V +AQPF RYPLI GQGN+G+ D S AA Sbjct: 62 AKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLIDGQGNWGSADDPKSFAA 121 Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188 RYTEAR+ + AE++L + + VD+ ++ EP + P++ PNLL NGT+GIAVGMA Sbjct: 122 MRYTEARLAKYAEVLLSEIGQGTVDWVPNFDGSLDEPSLLPARLPNLLLNGTTGIAVGMA 181 Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248 T IP HN++E+ +A + ++D+P+ ++E+L EYI GPDFP+GG IV SR + + Y GRG Sbjct: 182 TDIPPHNLREVTQACIHMLDHPKATVEELCEYIEGPDFPSGGEIVTSRSDLRQIYETGRG 241 Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308 ++RA++ E IVVTE+P+QV +R++E+IA+ + AK++P++ D+RDES + Sbjct: 242 SVKMRAKYTKE-----GQDIVVTELPHQVSGARIMEQIAQQMQAKKLPMVADLRDESDHE 296 Query: 309 --VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366 R+V+ P++ +D + LM +F +D+E + +N+NV+ + P V L +L+EWL Sbjct: 297 NPTRLVIIPRSNRIDAEPLMAHLFATTDLEKNYRVNLNVVGLDGRPAVKDLRVLLQEWLT 356 Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426 R + + RR +R+Q + R+ IL+GLL+A+LNIDE+IAIIR+EDKPKPV++ RF L++ Sbjct: 357 FRTQTVRRRLEYRLQKVLARLHILEGLLVAFLNIDEVIAIIRSEDKPKPVLMERFGLSDV 416 Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486 Q + +L+ +LR L +LEE +I++E D L E++K++ +L S + + E+++ E F Sbjct: 417 QAEYVLDTKLRQLARLEEMKIRAEQDELEKERKKLEDILGSEAKLRKLVKTELKQDMETF 476 Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546 RR+ E A +A + +I EP+TVV+S +GW+R+ K H +D L +K Sbjct: 477 GDE-----RRSPIVERKEA-QAFSETDLIASEPVTVVLSEKGWVRAAKGHDIDAQGLSYK 530 Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606 GD A + + L G++Y + A +L S RG GE + ++ Sbjct: 531 AGDKFLAAAKGRSHQNAIFLDDTGRSYCVAAHSLPSARGQGEPLTGRVNPPSGAGFTHVL 590 Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK---LVVKVTGDHVAV 663 + + K+++ S G F+ ++ + R GK + + + L+ + H+ Sbjct: 591 MGPDSMKVVLASDAGYGFVARLEDLQSKNRAGKALISLPKGACVSPPILLERQNNPHLVA 650 Query: 664 VGENRKLLIFSIDQIPEMSRGKG---VRLQSYKDGGISDVIC--FKICEGLTWIDSAGRS 718 + ++L+F + ++PE+++GKG + + S + +V+ + E T + AG+ Sbjct: 651 ISNEGRMLVFPVSELPELAKGKGNKIIGIPSARAQAREEVMSNLAVVGEKDTLVLHAGKR 710 Query: 719 YNR-SENDLLGWLGKRGGVGSLVPKGFPR 746 + + + +DL +LG+RG G +P+G R Sbjct: 711 FLKLTFDDLSHYLGERGRRGHKLPRGLQR 739 >gi|307129113|ref|YP_003881129.1| Topoisomerase IV subunit A [Dickeya dadantii 3937] gi|306526642|gb|ADM96572.1| Topoisomerase IV subunit A [Dickeya dadantii 3937] Length = 758 Score = 529 bits (1363), Expect = e-148, Method: Compositional matrix adjust. Identities = 287/746 (38%), Positives = 452/746 (60%), Gaps = 22/746 (2%) Query: 12 LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71 + + + ++L E YL Y++ I +RA+P + DG KPV RRI++AMSE+GL A Sbjct: 4 MTHDGAERLALHTFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLSASAK 63 Query: 72 FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYR 130 FKKSAR VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S AA R Sbjct: 64 FKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMR 123 Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190 YTE+R+++ AE++L + + VD+ ++ EP + P++ PN+L NGT+GIAVGMAT Sbjct: 124 YTESRLSKYAEVLLGELGQGTVDYVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATD 183 Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250 IP HNV+E+ AA+ALID P+ ++ LL Y+ GPDFPT I+ R+ I + Y GRG Sbjct: 184 IPPHNVREVAAAAVALIDEPDTQLDALLRYVQGPDFPTEAEIITPRDEIRKMYESGRGSV 243 Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-- 308 R+RA W E+ GS +V+T +P+QV +R++E+IA + AK++P+++D+RDES + Sbjct: 244 RMRAVWKKED---GS--VVITALPHQVSGARVLEQIASQMRAKKLPMIDDLRDESDHENP 298 Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368 R+VL P++ +D DL+M +F +D+E + +NMN++ + P V L IL EWLA R Sbjct: 299 TRLVLVPRSNRIDLDLVMNHLFATTDLEKSYRINMNMIGLDGRPSVKGLREILTEWLAFR 358 Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQV 428 R+ + RR +FR+ + +R+ IL+GLLIA+LNIDE+I IIRNED+PKPV++++F L++ Q Sbjct: 359 RDTVRRRLNFRLDKVLKRLHILEGLLIAFLNIDEVIHIIRNEDEPKPVLMAKFGLSDTQA 418 Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488 +AIL L+LR L KLEE +I+ E D+L E+++I +LL S ++ + + EI+E + + Sbjct: 419 EAILELKLRHLAKLEEMKIRGEQDDLAKERDQIQALLASERKMNSLLKKEIQEDAKAYGD 478 Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548 RR+ E A KA + + EP+T+V+S GW+RS K H +D S L +K G Sbjct: 479 E-----RRSPLHERGEA-KAMSEHDLSPSEPVTIVLSEMGWVRSAKGHDIDPSGLSYKAG 532 Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608 D+ + A + ++ + + G++Y L L S RG GE + + L I + Sbjct: 533 DAYRAAARGKSNQPVVFMDSTGRSYALDPLTLPSARGQGEPLTGKLTLPPGATIEQVLMA 592 Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--KLVVKVTGDHVAVVGE 666 +LL+ S G FI ++++A R GK L + + L ++ D + V Sbjct: 593 ADNQRLLLASDAGYGFICTFADLVARNRVGKAVLTLPDNAHVLPPLELQRDDDLLLTVTA 652 Query: 667 NRKLLIFSIDQIPEMSRGKGVRLQSYKDGGIS---DVICFKIC---EGLTWIDSAGRSYN 720 ++L+F + +PE+S+GKG ++ S ++ D I + + + + R Y+ Sbjct: 653 AGRMLLFPVADLPELSKGKGNKIVSIPAAQLASGDDRILWLLAIAPHSSVTLYAGKRKYS 712 Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPR 746 +L + RG G+ +P+G R Sbjct: 713 LRPEELQKYQASRGCKGTALPRGLQR 738 >gi|261211526|ref|ZP_05925814.1| topoisomerase IV subunit A [Vibrio sp. RC341] gi|260839481|gb|EEX66107.1| topoisomerase IV subunit A [Vibrio sp. RC341] Length = 761 Score = 528 bits (1361), Expect = e-148, Method: Compositional matrix adjust. Identities = 284/745 (38%), Positives = 452/745 (60%), Gaps = 25/745 (3%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 + V+ + LR E+ YL Y++ I +RA+P + DG KPV RRII+AMSE+GL A +KK Sbjct: 8 DGVEQLPLRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSASAKYKK 67 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTE 133 SAR VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S AA RYTE Sbjct: 68 SARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 127 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 A++++ AE++L + + VD++ ++ EP + P++ P++L NG +GIAVGMAT IP Sbjct: 128 AKLSKFAEILLSELGQGTVDWQPNFDGTMQEPKMLPARLPHILLNGVTGIAVGMATDIPP 187 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HNV+E+ EA + LID+P + L++Y+ GPDFPT I+ + + YR GRG R+R Sbjct: 188 HNVREVAEATIHLIDHPSAPLTDLMQYVKGPDFPTEAEIITPTVELEKIYRSGRGSVRMR 247 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRI 311 A WC E GS IV+T +P+QV ++L+E+IA + AK++P++ED+RDES + RI Sbjct: 248 AVWCKE----GS-DIVITALPHQVSGAKLLEQIAAQMRAKKLPMVEDLRDESDHENPTRI 302 Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371 V+ P++ +D DLLM +F +D+E F +N+N++ + PQV L IL EW+ RRE Sbjct: 303 VIVPRSNRVDCDLLMNHLFASTDLEKSFRVNLNMIGLDNRPQVKGLVQILSEWITFRRET 362 Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431 + R +R+ + R+ +L+GLLIAYLN+DE+I IIR ED PK V+++RF+LT+ Q DAI Sbjct: 363 VRSRLQYRLDKVLARLHVLQGLLIAYLNLDEVIEIIRTEDDPKAVLMARFNLTDIQADAI 422 Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491 L+ +LR L KLEE +I+ E D L E++K++ LL S ++ N + EI+ + F Sbjct: 423 LDTKLRHLAKLEEMKIRGEQDELEKERKKLEELLGSERRLNNLLKKEIKADADKFGDD-- 480 Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551 RR+ E A KA ++ ++ E ITVV+S +GWIR K H VD +L +K GD+ Sbjct: 481 ---RRSPLVEREEA-KALTERDLMPSEAITVVLSEKGWIRHAKGHDVDGQSLSYKAGDNY 536 Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611 + + + L +DG++Y+L + L S RG GE I +++ I + + Sbjct: 537 LTHACGKSNQQAVFLGSDGRSYSLESHTLPSARGQGEPITGRLNVAEGTTIRQVVMGEED 596 Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVAVVGENR 668 LV S G F+ + ++++ R GK + + ++ +++ + D + + Sbjct: 597 QLWLVGSDAGYGFVCKGDDLLSKNRSGKALINLPENSEVMTPQVIADLDKDEILAITNQG 656 Query: 669 KLLIFSIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTWIDSAGRSYNR 721 ++L+F I +P++S+GKG ++ ++ +S+++ +T + + R Sbjct: 657 RMLLFPIKDLPQLSKGKGNKIINIPAAKAKTREEVLSNLMVLPQGASIT-LYAGKRKLGL 715 Query: 722 SENDLLGWLGKRGGVGSLVPKGFPR 746 +DL + G+RG G+L+P+G R Sbjct: 716 KVSDLDNFRGERGRRGALLPRGLQR 740 >gi|254522337|ref|ZP_05134392.1| DNA topoisomerase IV, A subunit [Stenotrophomonas sp. SKA14] gi|219719928|gb|EED38453.1| DNA topoisomerase IV, A subunit [Stenotrophomonas sp. SKA14] Length = 747 Score = 528 bits (1361), Expect = e-147, Method: Compositional matrix adjust. Identities = 285/735 (38%), Positives = 440/735 (59%), Gaps = 21/735 (2%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 + LR E YL Y++ + +RA+P + DG KPV RRII++MSE+GL+ + KKSAR V Sbjct: 15 LPLREYAERAYLDYSMYVVLDRALPFIGDGLKPVQRRIIYSMSELGLNAASKPKKSARTV 74 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQ 138 G+VIGK HPHGD + Y++LV +AQPF RYPLI GQGNFG+ D S AA RYTE+++T Sbjct: 75 GDVIGKYHPHGDSACYEALVLMAQPFSYRYPLIEGQGNFGSSDDPKSFAAMRYTESKLTP 134 Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198 +AE++L + + D+ ++ EP P++ P+LL NGT+GIAVGMAT +P HN+ E Sbjct: 135 IAEVLLGELGQGTTDWAPNFDGTLQEPTWMPARLPHLLLNGTTGIAVGMATDVPPHNLNE 194 Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258 I A L L+DNPE S+ L E++ GPD+P+ I+ + + Y G G R RA + Sbjct: 195 IVSALLHLLDNPEASVRDLCEHVQGPDYPSSAEIITAASDLRNMYETGNGSVRARATFTK 254 Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES--AEDVRIVLFPK 316 E + IVVT +P+QV S++IE+IA + AK++P LEDIRDES A VR+VL P+ Sbjct: 255 E-----ANNIVVTALPFQVSPSKVIEQIAAQMRAKKLPWLEDIRDESDHANPVRVVLVPR 309 Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376 + +D + LM +F +DME + +N+NV+ + PQV L +L EWL R + RR Sbjct: 310 SNRVDAEQLMGHLFATTDMERSYRVNLNVIGLDGRPQVKNLKMLLSEWLTFRSNTVTRRL 369 Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRL 436 R+Q ++RR+ +L+GLL+A+LN+DE+I IIR ED+PK +++RF L+++Q + IL +L Sbjct: 370 QHRLQKVERRLHLLEGLLVAFLNLDEVIHIIRTEDEPKAALIARFGLSDDQAEYILETKL 429 Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496 + L +LEE +I+ E D L E+EKI +L+S K + ++ IR+ E+ + + G R Sbjct: 430 KQLARLEEMKIRGEQDELAKEREKILGILDS-KAKLKKL---IRD--ELTADAKKFGDAR 483 Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALH 556 + +A +A + ++ EP+TVV+S +GWIR+ K H VD SAL +++GD+L+ A+ Sbjct: 484 RSPLVQRQAAQAIDETELVPSEPMTVVLSEKGWIRAAKGHDVDASALSYRDGDALQGAVR 543 Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLV 616 A +T ++ L ++G+AY+ P L S RG+GE + VT + + ++ Sbjct: 544 ARSTQQVAFLDSEGRAYSTPVHTLPSARGNGEPLTGRFSPAPGTSFVTLASAEPETRFVL 603 Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVAVVGENRKLLIF 673 SS G F+ +I + GK L +S+ + +V V D + V + LL Sbjct: 604 ASSHGYGFVTRFENLIGRNKAGKAMLNLSAGSSVLIPSVVANVATDRIVAVTSSGNLLAI 663 Query: 674 SIDQIPEMSRGKGVRLQSYKDGGISD---VICFKICEGLTW-IDSAGRSYNRSENDLLGW 729 + + +PE+ +GKG ++ ++ V I G T + S R+ N+L + Sbjct: 664 AANDLPELDKGKGNKIIEIPKAKLATERVVAIVAISPGQTLQVRSGQRTMGLKFNELDAY 723 Query: 730 LGKRGGVGSLVPKGF 744 LG R G L+P+G+ Sbjct: 724 LGARATRGHLLPRGW 738 >gi|330817902|ref|YP_004361607.1| DNA topoisomerase IV, A subunit [Burkholderia gladioli BSR3] gi|327370295|gb|AEA61651.1| DNA topoisomerase IV, A subunit [Burkholderia gladioli BSR3] Length = 774 Score = 528 bits (1360), Expect = e-147, Method: Compositional matrix adjust. Identities = 283/691 (40%), Positives = 418/691 (60%), Gaps = 32/691 (4%) Query: 27 EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86 E YL YA+S +K RA+PD+ DG KPV RRI++AM+EMGL A KSAR+VG+V+GK Sbjct: 29 ERAYLDYAVSVVKGRALPDVCDGQKPVQRRILYAMNEMGLGNNAKPVKSARVVGDVLGKY 88 Query: 87 HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQG 146 HPHGDQS YD+LVRLAQ F RYPLI GQGNFG+ DGD AAA RYTEAR+T +A+L+L Sbjct: 89 HPHGDQSAYDALVRLAQDFSMRYPLIDGQGNFGSRDGDGAAAMRYTEARLTPIAQLLLDE 148 Query: 147 VDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALAL 206 +D+ VDF Y+ EP + P++ P L NG SGIAVG+AT IPSHN++E+ AA+AL Sbjct: 149 IDQGTVDFMPNYDGSFEEPKLLPARLPFALLNGASGIAVGLATEIPSHNLREVAAAAVAL 208 Query: 207 IDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSW 266 I NP+++ L++ + GPDFP GG I+ S I +Y +GRG +VRARW +EE+ RG W Sbjct: 209 IRNPKLTHADLMQLVPGPDFPGGGQIISSDAEISAAYEVGRGSLKVRARWKIEELARGQW 268 Query: 267 CIVVTEIPYQVQKSRLIEKIAELIIAK------------------RIPLLEDIRDESAED 308 +VV E+P +++E+I EL K + LL+ +RDES +D Sbjct: 269 QLVVNELPPNTSCQKVLEEIEELTNPKIKAGKKTLTQEQANTKKTLLDLLDAVRDESGKD 328 Query: 309 --VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366 VR+V PK+R+LD + ++S+ + +E+ PLN+ ++ P L IL EW+ Sbjct: 329 APVRLVFEPKSRALDQNEFVQSLLAHTSLESNAPLNLVMIGNDGRPAQKGLGAILGEWVG 388 Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426 R+ + RR R+ +D R+ IL+G +I +LNIDE+I IIR D+PK ++S F L+E Sbjct: 389 FRQLTVTRRCRHRLGKVDDRIHILEGRMIVFLNIDEVIRIIRESDEPKAALMSAFGLSER 448 Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486 Q + IL +RLR L +LE+ +I+ EL+ L AEK K++ LL N+ A + +KEI Sbjct: 449 QAEDILEIRLRQLARLEKIKIEKELEELRAEKAKLEDLLA------NESAMKRLLIKEIE 502 Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546 + G R T + + +AT + +I+ EP+TVV+S +GW+R+LK H +D ++ FK Sbjct: 503 GDARQFGDDRRTL--IQQEKRATFEARVID-EPVTVVVSQKGWVRALKGHGLDPASFSFK 559 Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606 GD L A T D ++ + G+ +++P L GRG G + LI+L ++ F Sbjct: 560 AGDGLYAAFQCRTPDTLIAWGSKGRVHSVPVQVLPGGRGDGVPVTSLIELESGTHLMHYF 619 Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV--SSEEKMKLVVKVTGDHVAVV 664 + LL+ SS G FI + ++I+ + GK F+ + + + V VA + Sbjct: 620 AAGAEQPLLLASSNGFGFIAKVGDMISRQKTGKAFMTIDEGAVPLAPMPVMPLATQVACL 679 Query: 665 GENRKLLIFSIDQIPEMSR-GKGVRLQSYKD 694 +LL+F +D++ +S G+GV L + +D Sbjct: 680 SAQGRLLVFGLDEMKTLSAGGRGVILMALED 710 >gi|190573519|ref|YP_001971364.1| DNA topoisomerase IV subunit A [Stenotrophomonas maltophilia K279a] gi|190011441|emb|CAQ45059.1| putative DNA topoisomerase IV subunit A [Stenotrophomonas maltophilia K279a] Length = 747 Score = 528 bits (1360), Expect = e-147, Method: Compositional matrix adjust. Identities = 285/735 (38%), Positives = 439/735 (59%), Gaps = 21/735 (2%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 + LR E YL Y++ + +RA+P + DG KPV RRII++MSE+GL+ + KKSAR V Sbjct: 15 LPLREYAERAYLDYSMYVVLDRALPFIGDGLKPVQRRIIYSMSELGLNAASKPKKSARTV 74 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQ 138 G+VIGK HPHGD + Y++LV +AQPF RYPLI GQGNFG+ D S AA RYTE+++T Sbjct: 75 GDVIGKYHPHGDSACYEALVLMAQPFSYRYPLIEGQGNFGSSDDPKSFAAMRYTESKLTP 134 Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198 +AE++L + + D+ ++ EP P++ P+LL NGT+GIAVGMAT +P HN+ E Sbjct: 135 IAEVLLGELGQGTTDWAPNFDGTLQEPTWMPARLPHLLLNGTTGIAVGMATDVPPHNLNE 194 Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258 I A L L+DNP+ ++ L E++ GPD+P+ I+ + + Y G G R RA + Sbjct: 195 IVSALLHLLDNPDATVRDLCEHVQGPDYPSSAEIITAANDLRNIYETGNGSVRARATFNK 254 Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES--AEDVRIVLFPK 316 E + IVVT +P+QV S++IE+IA + AK++P LEDIRDES A VR+VL P+ Sbjct: 255 E-----ANNIVVTALPFQVSPSKVIEQIAAQMRAKKLPWLEDIRDESDHANPVRVVLVPR 309 Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376 + +D D LM +F +D+E + +N+NV+ + PQV L +L EWL R + RR Sbjct: 310 SNRVDADQLMGHLFATTDLERSYRVNLNVIGLDGRPQVKNLKMLLSEWLTFRSNTVTRRL 369 Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRL 436 R+Q ++RR+ +L+GLL+A+LN+DE+I IIR ED+PK +++RF L+E Q + IL +L Sbjct: 370 QHRLQKVERRLHLLEGLLVAFLNLDEVIHIIRTEDEPKAALIARFGLSEEQAEYILETKL 429 Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496 + L +LEE +I+ E D L E+EKI +L+S K + ++ IR+ E+ + + G R Sbjct: 430 KQLARLEEMKIRGEQDELAKEREKILGILDS-KAKLKKL---IRD--ELTADAKKFGDAR 483 Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALH 556 + +A +A + ++ EP+TVV+S +GWIR+ K H VD SAL +++GD+L+ A+ Sbjct: 484 RSPLVQRQAAQAIDETELVPSEPMTVVLSEKGWIRAAKGHDVDASALSYRDGDALQGAVR 543 Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLV 616 A +T ++ L ++G+AY+ P L S RG+GE + VT + + ++ Sbjct: 544 ARSTQQVAFLDSEGRAYSTPVHTLPSARGNGEPLTGRFSPAAGTSFVTLASAEPDARFVL 603 Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVAVVGENRKLLIF 673 SS G F+ +I + GK L +SS + +V V D + V + LL Sbjct: 604 ASSHGYGFVTRFENLIGRNKAGKAMLNLSSGSSVLTPSMVANVATDRIVAVTSSGNLLAI 663 Query: 674 SIDQIPEMSRGKGVRLQSYKDGGISD---VICFKICEGLTW-IDSAGRSYNRSENDLLGW 729 + + +PE+ +GKG ++ ++ V I G T + S R+ N+L + Sbjct: 664 AANDLPELDKGKGNKIIEIPKAKLATERVVAIVAISPGQTLQVRSGQRTMGLKFNELDAY 723 Query: 730 LGKRGGVGSLVPKGF 744 LG R G L+P+G+ Sbjct: 724 LGARATRGHLLPRGW 738 >gi|115499625|dbj|BAF33487.1| Type II Topoisomerase IV, subunit A [Listonella anguillarum] Length = 758 Score = 528 bits (1359), Expect = e-147, Method: Compositional matrix adjust. Identities = 284/751 (37%), Positives = 452/751 (60%), Gaps = 25/751 (3%) Query: 9 SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68 S + + V+ + LR E+ YL Y++ I +RA+P + DG KPV RRII+AMSE+GL Sbjct: 2 STEITFDGVEKLPLRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61 Query: 69 GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAA 127 A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S A Sbjct: 62 SAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFA 121 Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187 A RYTEA++++ AE++L + + VD++ ++ EP + P++ P++L NG +GIAVGM Sbjct: 122 AMRYTEAKLSKFAEVLLGELGQGNVDWQPNFDGTMQEPQMLPARLPHILLNGVTGIAVGM 181 Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247 AT IP HNV+EI +A + LIDNPE + +++Y+ GPD+PT I+ R I + YR GR Sbjct: 182 ATDIPPHNVREIADATIHLIDNPEAQLHDVMQYVQGPDYPTEAEIISPRIEIEKIYRSGR 241 Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307 G ++RA W E GS +V+T +P+QV ++L+E+IA + AK++P++ED+RDES Sbjct: 242 GSIKMRAVWHKE----GS-DVVITALPHQVSGAKLLEQIANQMRAKKLPMVEDLRDESDH 296 Query: 308 D--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365 + RIV+ P++ +D DLLM +F +D+E F +N+N++ + P+V L IL EW+ Sbjct: 297 ENPTRIVIVPRSNRVDCDLLMSHLFASTDLEKSFRVNLNMIGLNNRPEVKGLVTILSEWI 356 Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425 RR + RR +R+ + R+ IL+GLLIAYLNIDE+I IIR ED+PK V+++RF ++ Sbjct: 357 EFRRTTVRRRLQYRLDKVMARLHILEGLLIAYLNIDEVIEIIRTEDEPKAVLMARFGISA 416 Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485 Q DAIL+ +LR L KLEE +I+ E D L E+EK++ LL S ++ + EI+ E Sbjct: 417 IQADAILDTKLRHLAKLEEMKIRGEQDELAKEREKLEQLLGSERRLNTLLKKEIKADAEK 476 Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545 + RR+ E + + KA ++ ++ E ITVV+S +GW+R K H VD +L + Sbjct: 477 YGDD-----RRSPLIERAES-KALTERDLVPSEAITVVLSEKGWVRHAKGHDVDCQSLSY 530 Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605 K GD + +++ L +DG++Y+L A +L S R GE I +++ I Sbjct: 531 KSGDQYLAHACGKSNQQVVFLGSDGRSYSLEAHSLPSARTQGEPITGRLNITEGSSIRQV 590 Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVA 662 + + LV S G F+ + E+++ R GK + + ++ + V + D + Sbjct: 591 VMGEEEQLWLVGSDAGYGFVCKGGELLSKNRSGKALVNLPENSEVMTPQASVNLESDDIL 650 Query: 663 VVGENRKLLIFSIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTWIDSA 715 + ++L+F I +P++++GKG ++ ++ +S +I +T + + Sbjct: 651 AITNQGRMLLFPIKDLPQLTKGKGNKIINIPAAKSKEREEFVSHLISLPQGAAIT-LYAG 709 Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746 R +DL + G+RG GSL+P+G R Sbjct: 710 KRKLGLKASDLENFRGERGRRGSLLPRGLQR 740 >gi|242241010|ref|YP_002989191.1| DNA topoisomerase IV subunit A [Dickeya dadantii Ech703] gi|242133067|gb|ACS87369.1| DNA topoisomerase IV, A subunit [Dickeya dadantii Ech703] Length = 757 Score = 528 bits (1359), Expect = e-147, Method: Compositional matrix adjust. Identities = 280/746 (37%), Positives = 454/746 (60%), Gaps = 22/746 (2%) Query: 12 LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71 + + + ++L E YL Y++ I +RA+P + DG KPV RRI++AMSE+GL A Sbjct: 4 MTHDGAERLALHTFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLSASAK 63 Query: 72 FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYR 130 FKKSAR VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S AA R Sbjct: 64 FKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMR 123 Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190 YTE+R+++ AE++L + + VD+ ++ EP + P++ PN+L NGT+GIAVGMAT Sbjct: 124 YTESRLSKYAEVLLGELGQGTVDYVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATD 183 Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250 IP HNV+E+ AA+ALIDNP+ +++ LL+++ PDFPT I+ SR+ + + Y GRG Sbjct: 184 IPPHNVREVAAAAVALIDNPDATLDALLQHVQAPDFPTEAEIITSRDELRKMYETGRGSV 243 Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-- 308 R+RA W E+ GS +V+T +P+QV +R++E+IA + AK++P+++D+RDES + Sbjct: 244 RMRAVWKKED---GS--VVITALPHQVSGARVLEQIASQMRAKKLPMIDDLRDESDHENP 298 Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368 R+VL P++ +D D++M +F +D+E + +NMN++ + P V L IL EWLA R Sbjct: 299 TRLVLVPRSNRIDLDMVMNHLFATTDLEKSYRINMNMIGLDGRPGVKGLQEILTEWLAFR 358 Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQV 428 R+ + RR SFR+ + +R+ +L+GLL+A+LNIDE+I IIR+ED+PKPV+++RF L++ Q Sbjct: 359 RDTVRRRLSFRLDKVLKRLHVLEGLLVAFLNIDEVIHIIRSEDEPKPVLMARFGLSDTQA 418 Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488 +AIL L+LR L KLEE +I+ E D L E+++I +L S ++ + + EI+ + + Sbjct: 419 EAILELKLRHLAKLEEVKIRGEQDELAKERDQIQDILASERKMSSLLKKEIQADAKAYGD 478 Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548 RR+ E + A KA + + EP+T+V+S GW+RS K H +D S L++K G Sbjct: 479 D-----RRSPLQERAEA-KAMSEHDLSPSEPVTIVLSEMGWVRSAKGHDIDPSGLNYKAG 532 Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608 D+ + A + ++ + + G++Y L L S RG GE + + L + + Sbjct: 533 DNYRAAARGKSNQPVVFIDSTGRSYALDPLTLPSARGQGEPLTGKLTLPPGATVEQVLMT 592 Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH--VAVVGE 666 +LL+ S G FI S+++A R GK L + K+ ++V+ D + + Sbjct: 593 ADEQRLLLASDAGYGFICTFSDLVARNRVGKAVLALPDNAKVLPPLEVSHDDDLLLTITA 652 Query: 667 NRKLLIFSIDQIPEMSRGKGVRL----QSYKDGGISDVICFKICE--GLTWIDSAGRSYN 720 ++L+F + +P++S+GKG ++ + G ++ ++ + S R Y Sbjct: 653 AGRMLLFPVADLPQLSKGKGNKIVAIPAAQAASGEDRILWLQVISPRATVTLHSGKRKYA 712 Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPR 746 +L + RG G+ +P+G R Sbjct: 713 LRPEELQKFTASRGCKGTTLPRGLQR 738 >gi|262404742|ref|ZP_06081297.1| topoisomerase IV subunit A [Vibrio sp. RC586] gi|262349774|gb|EEY98912.1| topoisomerase IV subunit A [Vibrio sp. RC586] Length = 761 Score = 527 bits (1358), Expect = e-147, Method: Compositional matrix adjust. Identities = 274/681 (40%), Positives = 427/681 (62%), Gaps = 17/681 (2%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 + V+ + LR E+ YL Y++ I +RA+P + DG KPV RRII+AMSE+GL A +KK Sbjct: 8 DGVEQLPLRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSASAKYKK 67 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTE 133 SAR VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S AA RYTE Sbjct: 68 SARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 127 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 A++++ AE++L + + VD++ ++ EP + P++ P++L NG +GIAVGMAT IP Sbjct: 128 AKLSKFAEILLSELGQGTVDWQPNFDGTMQEPKMLPARLPHILLNGVTGIAVGMATDIPP 187 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HNV+E+ EA + LIDNP + L++Y+ GPDFPT I+ + + YR GRG R+R Sbjct: 188 HNVREVAEATIHLIDNPNAPLTDLMQYVKGPDFPTEAEIITPTVELEKIYRSGRGSVRMR 247 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRI 311 A WC E GS IV+T +P+QV ++L+E+IA + AK++P++ED+RDES + RI Sbjct: 248 AVWCKE----GS-DIVITALPHQVSGAKLLEQIAAQMRAKKLPMVEDLRDESDHENPTRI 302 Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371 V+ P++ +D DLLM +F +D+E F +N+N++ + PQV L IL EW++ RRE Sbjct: 303 VIVPRSNRVDCDLLMNHLFASTDLEKSFRVNLNMIGLDNRPQVKGLVQILSEWISFRRET 362 Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431 + R +R+ + R+ IL+GLLIAYLN+DE+I IIRNED PK V+++RF LT+ Q DAI Sbjct: 363 VRSRLQYRLDKVLARLHILQGLLIAYLNLDEVIEIIRNEDDPKAVLMARFDLTDIQADAI 422 Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491 L+ +LR L KLEE +I+ E D L E++K++ LL S ++ N + EI+ + F Sbjct: 423 LDTKLRHLAKLEEMKIRGEQDELEKERKKLEELLGSERRLNNLLKKEIKADADKFGDD-- 480 Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551 RR+ E A KA ++ ++ E ITVV+S +GWIR K H VD +L++K GD+ Sbjct: 481 ---RRSPLVEREEA-KALTERDLMPSEAITVVLSEKGWIRHAKGHDVDCQSLNYKAGDNY 536 Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611 ++ + + L +DG++Y+L + L S RG GE I +++ I + + Sbjct: 537 LTHACGKSSQQAVFLGSDGRSYSLESHTLPSARGQGEPITGRLNVAEGTTIRQVVMGEED 596 Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVAVVGENR 668 LV S G F+ + ++++ R GK + + ++ +++ + D + + Sbjct: 597 QLWLVGSDAGYGFVCKGDDLLSKNRSGKALINLPENSEVMTPQVIADLDKDEILAITNQG 656 Query: 669 KLLIFSIDQIPEMSRGKGVRL 689 ++L+F I +P++S+GKG ++ Sbjct: 657 RMLLFPIKDLPQLSKGKGNKI 677 >gi|262274993|ref|ZP_06052804.1| topoisomerase IV subunit A [Grimontia hollisae CIP 101886] gi|262221556|gb|EEY72870.1| topoisomerase IV subunit A [Grimontia hollisae CIP 101886] Length = 759 Score = 527 bits (1358), Expect = e-147, Method: Compositional matrix adjust. Identities = 283/746 (37%), Positives = 459/746 (61%), Gaps = 27/746 (3%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 + V+ + LR E+ YL Y++ I +RA+P + DG KPV RRII+AMSE+GL A +KK Sbjct: 7 DGVEQLPLRKFTEDAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAMSELGLSATAKYKK 66 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTE 133 SAR VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S AA RYTE Sbjct: 67 SARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 126 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 +R+++ +E++L + + VD++ ++ EP PS+ P++L NG +GIAVGMAT IP Sbjct: 127 SRLSRFSEVLLSELGQGTVDWQPNFDGTMKEPKALPSRLPHILLNGVTGIAVGMATDIPP 186 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN +E+ A +ALID+P + ++ LLE++ GPD+PT I+ + + + YR GRG ++R Sbjct: 187 HNAREVANALVALIDSPTLDLDGLLEHVKGPDYPTEAEIITPQVELKKLYRDGRGSIKMR 246 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRI 311 ARW + + IV+T +P+QV ++L+E+IA + AK++P+++D+RDES + RI Sbjct: 247 ARWH-----KDNGDIVITALPHQVSGAKLLEQIANQMRAKKLPMVDDLRDESDHENPTRI 301 Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371 V+ P++ +D + LM +F+ +D+E + +N+N++ + PQV L IL EWL RRE Sbjct: 302 VIVPRSNRVDCEQLMNHLFVSTDLEKSYRVNLNMIGLDGRPQVKGLLKILTEWLEFRRET 361 Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431 + RR +R+ + R+ IL+GLL+AYLNIDE+I IIR ED+PK ++SRF L+E Q +AI Sbjct: 362 VRRRLQYRLDKVLARLHILEGLLVAYLNIDEVIEIIRTEDEPKKELMSRFGLSEKQAEAI 421 Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491 L ++LR L KLEE +I+ E D L E+E+++ +L S ++ + KEI + + Sbjct: 422 LEIKLRQLAKLEEIKIRGEQDELNKEREQLEKVLGSERRMNTLLK------KEILADAEK 475 Query: 492 LG-RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDS 550 G RR+ E + A KA ++ +I EPITVV+S +GWIR K H VD ++L +K GDS Sbjct: 476 YGDERRSPLVERAEA-KAMTERDLIPSEPITVVLSEKGWIRHAKGHDVDPTSLSYKSGDS 534 Query: 551 LKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDS 610 + + ++ + +DG++Y L + L S R GE I +++ + + ++ Sbjct: 535 YLASARGKSNQPVVFIGSDGRSYALESHTLPSARSQGEPITGRLNITAGTAVRHVMMGEN 594 Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV----TGDHVAVVGE 666 +L+ S G F+ ++ ++++ R GK L + ++ +V T D VA+ E Sbjct: 595 DNLVLMASDAGYGFVCKQDDLLSKNRSGKALLSLPQAAEVMPPQRVADIETDDIVAITNE 654 Query: 667 NRKLLIFSIDQIPEMSRGKG---VRLQSYKDGGISDVIC--FKICEGLTWIDSAG-RSYN 720 R +L+F + ++P++ +GKG + + S + +++ F I +G + AG R + Sbjct: 655 GR-MLVFPVKELPQLGKGKGNKIINIPSARAKAREELLTQLFVIPQGASVTLHAGKRKLS 713 Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPR 746 D+ + G+RG GS++P+G R Sbjct: 714 LKPTDIDNFRGERGRRGSMLPRGLQR 739 >gi|311695410|gb|ADP98283.1| DNA topoisomerase IV subunit A [marine bacterium HP15] Length = 769 Score = 527 bits (1358), Expect = e-147, Method: Compositional matrix adjust. Identities = 290/749 (38%), Positives = 447/749 (59%), Gaps = 28/749 (3%) Query: 13 VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72 +E + VSLR E+ YL Y++ I +RA+P++ DG KPV RRI++AMSE+GL + + Sbjct: 7 TDEGFERVSLRDYTEKAYLDYSMYVILDRALPNVGDGLKPVQRRIVYAMSELGLKSTSKY 66 Query: 73 KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRY 131 KKSAR VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G+ D S AA RY Sbjct: 67 KKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGSPDDPKSFAAMRY 126 Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191 TE+R+ AE++L + + VD+ ++ EP V P++ P++L NGT+GIAVGMAT I Sbjct: 127 TESRLAPFAEVLLGELGQGTVDWVPNFDGTMDEPSVLPARLPHVLLNGTTGIAVGMATDI 186 Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251 P HNV+E+ A + L+D PE ++++L E+I GPDFPT I+ R+ I + Y GRG R Sbjct: 187 PPHNVREVTAACIRLLDQPESTVDELCEHIKGPDFPTQAEIITPRKDIRQMYETGRGSLR 246 Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--V 309 +RARW R S IVVT++P+QV +R++E+IA + K++P++ D+RDES + Sbjct: 247 MRARWI-----RESGEIVVTDLPHQVSGNRVLEQIAHQMQTKKLPMVADLRDESDHENPT 301 Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369 R+V+ P++ +D D LM +F +D+E + +N+NV+ P V L IL EWL RR Sbjct: 302 RLVIVPRSNRVDLDGLMAHLFASTDLEKTYRVNINVIGNDGRPGVKGLHQILTEWLTFRR 361 Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429 + RR R+ + R+ IL+GLLIAYLNIDE+I IIR EDKPK +++RF L+ +Q + Sbjct: 362 TTVIRRLQHRLDKVLARLHILEGLLIAYLNIDEVIEIIRTEDKPKAELMARFGLSADQAE 421 Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489 AIL L+LR L KLEE +I+ E D L AE++++ S+L S + I E++ E F Sbjct: 422 AILELKLRHLAKLEEMKIRGEQDELAAERDELQSILGSEDRLRELIKSEMQADAETFGDD 481 Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549 RR+ E A KA + +I +P+TVV+S +GW+R+ K H ++ L +K GD Sbjct: 482 -----RRSPIVEREEA-KAFSEVDLISNDPVTVVLSEKGWVRAAKGHDIEPEGLSYKAGD 535 Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609 +A + + L + G+AY+L A + S RG GE + I+ + D Sbjct: 536 RFSLAARGRNNQQTIFLDSTGRAYSLMAHSFPSARGQGEPLTGRINPPSGASFSGLLMGD 595 Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--KLVVKVTGD--HVAVVG 665 + K L+V+ G F+ +++I+ R GK + V ++ L + T ++ V Sbjct: 596 PSRKALLVTDGGYGFVTSLNDMISKNRNGKAVVSVPKGARIMPPLTIPTTEKTLYLGAVS 655 Query: 666 ENRKLLIFSIDQIPEMSRGKG--------VRLQSYKDGGISDVICFKICEGLTWIDSAGR 717 ++L+F + ++PE+++GKG R+QS ++ ++ V F + L I + R Sbjct: 656 NEGRMLVFPLSELPELAKGKGNKIISIPSARVQSREEYVVA-VAVFAEDDQLE-IRAGKR 713 Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPR 746 +DL +LG+RG G +P+G R Sbjct: 714 KMGLQFSDLEHYLGERGRRGHKLPRGLQR 742 >gi|257454137|ref|ZP_05619410.1| DNA topoisomerase IV, A subunit [Enhydrobacter aerosaccus SK60] gi|257448465|gb|EEV23435.1| DNA topoisomerase IV, A subunit [Enhydrobacter aerosaccus SK60] Length = 749 Score = 527 bits (1357), Expect = e-147, Method: Compositional matrix adjust. Identities = 284/756 (37%), Positives = 453/756 (59%), Gaps = 27/756 (3%) Query: 9 SNTLVEENVKAVSLRFAL-------EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61 S+TLV + KA L E YL YA+ I +RA+P + DG KPV RRI++AM Sbjct: 2 SDTLVAKTTKANDLNNPTRSVAEFTENAYLNYAMYVIMDRALPHIADGLKPVQRRIVYAM 61 Query: 62 SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121 SE+GL A KKSAR +G+VIGK HPHGD + Y+++V ++QPF RYPLISGQGNFG+ Sbjct: 62 SELGLKNTAKPKKSARTIGDVIGKYHPHGDSACYEAMVLMSQPFSYRYPLISGQGNFGSP 121 Query: 122 DG-DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180 D S AA RYTEA+++ A +L + + VD++D ++ EPV P++ PN+L NGT Sbjct: 122 DDPKSFAAMRYTEAKLSAYANTLLNELGQGTVDWQDNFDGTLQEPVTLPARLPNILLNGT 181 Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240 +GIAVGMAT IP HN+ E+ + +AL+ P ++ ++L +YI PD PT I+ S E ++ Sbjct: 182 TGIAVGMATDIPPHNLSEVVKGCIALLKKPTMTEKELAKYIPAPDLPTKAEIITSPEDLL 241 Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300 + Y+ GRG +++RA + V++ + +++ +PYQ+ +++IE+IA LI AK++P + D Sbjct: 242 QLYKTGRGSYKMRATYHVDDKEKN--LVIIDALPYQISGNKIIEQIANLINAKKLPWVTD 299 Query: 301 IRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLD 358 I DES RIVL ++ +D + +M +F +D+E+ + +N+N++ PQV L Sbjct: 300 IHDESDHQNACRIVLELRSSRVDIEPMMSHLFASTDLESNYRVNLNMIGTNGKPQVKSLL 359 Query: 359 GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV 418 IL EWL+ RR+ + RR +R+ I++R+ IL GLLIAYL+IDE+I IIR E+ PK ++ Sbjct: 360 TILTEWLSVRRDTVTRRLQYRLDKIEQRLHILAGLLIAYLHIDEVIRIIREEEDPKAELM 419 Query: 419 SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE 478 +R+ LTE+Q +AIL++RLR L +LEE ++K E +L AEK +I+ LN+ + + Sbjct: 420 TRYDLTESQANAILDIRLRQLARLEEIELKREQSDLEAEKAQIEGYLNNPDKLTGLM--- 476 Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA-MIEKEPITVVISNRGWIRSLKSHS 537 ++E+ + + G +R + V R + L++ + EP+TV++S GWIRS K H Sbjct: 477 ---IEELTADMKEHGDKRQSPI-VERTEATALKETDLAPSEPVTVIVSKSGWIRSAKGHD 532 Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLN 597 VD + ++++ GD+ + +++ L+ G++Y L A L S RG GE + L+ Sbjct: 533 VDAANMNYRSGDAYLAHAQGKSNEKVYLMDNTGRSYRLDAHTLPSARGQGEPLTSLLKPT 592 Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657 V + KL++ SS+G FI +++ N + GK ++ ++ L+ Sbjct: 593 GGASFVNVLMGQDDSKLIMASSQGYGFINTFADLDTNQKAGKNV--INFDDAFSLITHQI 650 Query: 658 GDH---VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDG-GISDVICFKICEGLTWID 713 G+ V VV LL++ + ++P M +GKG +L KDG + + F + L+ +D Sbjct: 651 GEQDTLVGVVSSAGHLLVYPLTELPMMKKGKGNKLIDLKDGDSVVAITTFSEGDSLS-LD 709 Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGK 749 S R+ D+ ++G RG G L+PKGF + K Sbjct: 710 SGKRTLTLKPMDIANFMGARGKRGGLLPKGFQKVSK 745 >gi|308188118|ref|YP_003932249.1| topoisomerase IV subunit A [Pantoea vagans C9-1] gi|308058628|gb|ADO10800.1| topoisomerase IV subunit A [Pantoea vagans C9-1] Length = 757 Score = 526 bits (1356), Expect = e-147, Method: Compositional matrix adjust. Identities = 280/746 (37%), Positives = 453/746 (60%), Gaps = 26/746 (3%) Query: 12 LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71 L ++ + ++L E+ YL Y++ I +RA+P + DG KPV RRII+AMSE+GL+ A Sbjct: 4 LTQDGAERLALHTFTEDAYLKYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLNASAK 63 Query: 72 FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYR 130 FKKSAR VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S AA R Sbjct: 64 FKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMR 123 Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190 YTE+R+++ AEL+L + + V+++ ++ EP + P++ PN+L NGT+GIAVGMAT Sbjct: 124 YTESRLSKYAELLLGELGQGTVEYQPNFDGTLQEPKILPARLPNILLNGTTGIAVGMATD 183 Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250 IP HN++E+ +AA+ALID P+ ++E+LL+ + GPD+PT I+ R+ I + Y+ GRG Sbjct: 184 IPPHNLREVAQAAIALIDAPKTTLEQLLDIVQGPDYPTEAEIITPRDEIRKIYQTGRGSI 243 Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-- 308 R RA W EE +V+T +P+QV +R++E+IA + K++P++ED+RDES + Sbjct: 244 RQRAVWKKEE-----GEVVITALPHQVSGARVLEQIANQMRNKKLPMVEDLRDESDHENP 298 Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368 R+V+ P++ +D D +M +F +D+E + +N+N++ + P V L IL EWL R Sbjct: 299 TRLVIVPRSNRVDLDQVMNHLFATTDLEKSYRVNLNMIGLDNRPAVKNLHEILTEWLVFR 358 Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQV 428 R+ + RR ++R+ + RR+ IL+GLL+A+LNIDE+I IIR ED+PKPV++SRF ++E Q Sbjct: 359 RDTVKRRLNYRLDRVLRRLHILEGLLVAFLNIDEVIEIIRTEDEPKPVLMSRFGISETQA 418 Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488 ++IL L+LR L KLEE +I+ E +L E++++ + L S ++ + KE+ + Sbjct: 419 ESILELKLRHLAKLEEMKIRGEQADLEKERDQLQATLASERKMNTLLK------KELQAD 472 Query: 489 STDLG-RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKE 547 S G RR+ CE A KA + ++ EP+T+V+S GW+RS K H +D + L +K Sbjct: 473 SASYGDERRSPLCEREEA-KALSETELVPSEPVTIVLSQMGWVRSAKGHDIDPAGLSYKA 531 Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV 607 GDS A + + + + G++YTL +L S RG GE + + + + Sbjct: 532 GDSYLAAARGKSNQPVAFIDSTGRSYTLDPTSLPSARGQGEPLTGKLTPPPGAVVEQVLM 591 Query: 608 YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--KLVVKVTGDHVAVVG 665 +LL+ S G FI S++I+ R GK L + ++ + V D + + Sbjct: 592 EPDDQRLLMASDAGYGFICTFSDLISRNRAGKALLTLPDNARVMTPMAVHHEDDMLLAIT 651 Query: 666 ENRKLLIFSIDQIPEMSRGKG---VRLQSYKDGGISDVICFKIC----EGLTWIDSAGRS 718 + ++L+F + ++P+MS+GKG + + S + D + + + +T + Sbjct: 652 QAGRMLMFPVGELPQMSKGKGNKIISIPSAEAAAGQDKLAWLMILPPGSAITLHVGKRKM 711 Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGF 744 RSE +L + RG G+L+P+G Sbjct: 712 LLRSE-ELQKFRADRGRRGTLLPRGL 736 >gi|22127381|ref|NP_670804.1| DNA topoisomerase IV subunit A [Yersinia pestis KIM 10] gi|45442750|ref|NP_994289.1| DNA topoisomerase IV subunit A [Yersinia pestis biovar Microtus str. 91001] gi|51597690|ref|YP_071881.1| DNA topoisomerase IV subunit A [Yersinia pseudotuberculosis IP 32953] gi|108809111|ref|YP_653027.1| DNA topoisomerase IV subunit A [Yersinia pestis Antiqua] gi|108810694|ref|YP_646461.1| DNA topoisomerase IV subunit A [Yersinia pestis Nepal516] gi|150260297|ref|ZP_01917025.1| DNA topoisomerase IV subunit A [Yersinia pestis CA88-4125] gi|153948943|ref|YP_001399574.1| DNA topoisomerase IV subunit A [Yersinia pseudotuberculosis IP 31758] gi|162419004|ref|YP_001604893.1| DNA topoisomerase IV subunit A [Yersinia pestis Angola] gi|165924871|ref|ZP_02220703.1| DNA topoisomerase IV, A subunit [Yersinia pestis biovar Orientalis str. F1991016] gi|165939881|ref|ZP_02228420.1| DNA topoisomerase IV, A subunit [Yersinia pestis biovar Orientalis str. IP275] gi|166008853|ref|ZP_02229751.1| DNA topoisomerase IV, A subunit [Yersinia pestis biovar Antiqua str. E1979001] gi|166212201|ref|ZP_02238236.1| DNA topoisomerase IV, A subunit [Yersinia pestis biovar Antiqua str. B42003004] gi|167399465|ref|ZP_02304989.1| DNA topoisomerase IV, A subunit [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167419083|ref|ZP_02310836.1| DNA topoisomerase IV, A subunit [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167425150|ref|ZP_02316903.1| DNA topoisomerase IV, A subunit [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167469330|ref|ZP_02334034.1| DNA topoisomerase IV, A subunit [Yersinia pestis FV-1] gi|170022913|ref|YP_001719418.1| DNA topoisomerase IV subunit A [Yersinia pseudotuberculosis YPIII] gi|186896831|ref|YP_001873943.1| DNA topoisomerase IV subunit A [Yersinia pseudotuberculosis PB1/+] gi|218927864|ref|YP_002345739.1| DNA topoisomerase IV subunit A [Yersinia pestis CO92] gi|229837354|ref|ZP_04457517.1| DNA topoisomerase IV subunit A [Yersinia pestis Pestoides A] gi|229840565|ref|ZP_04460724.1| DNA topoisomerase IV subunit A [Yersinia pestis biovar Orientalis str. PEXU2] gi|229842886|ref|ZP_04463038.1| DNA topoisomerase IV subunit A [Yersinia pestis biovar Orientalis str. India 195] gi|229900892|ref|ZP_04516016.1| DNA topoisomerase IV subunit A [Yersinia pestis Nepal516] gi|270487736|ref|ZP_06204810.1| DNA topoisomerase IV, A subunit [Yersinia pestis KIM D27] gi|294502738|ref|YP_003566800.1| DNA topoisomerase IV subunit A [Yersinia pestis Z176003] gi|21960467|gb|AAM87055.1|AE013953_11 DNA topoisomerase IV subunit A [Yersinia pestis KIM 10] gi|45437616|gb|AAS63166.1| DNA topoisomerase IV subunit A [Yersinia pestis biovar Microtus str. 91001] gi|51590972|emb|CAH22630.1| DNA topoisomerase IV subunit A [Yersinia pseudotuberculosis IP 32953] gi|108774342|gb|ABG16861.1| DNA topoisomerase IV subunit A [Yersinia pestis Nepal516] gi|108781024|gb|ABG15082.1| DNA topoisomerase IV subunit A [Yersinia pestis Antiqua] gi|115346475|emb|CAL19348.1| DNA topoisomerase IV subunit A [Yersinia pestis CO92] gi|149289705|gb|EDM39782.1| DNA topoisomerase IV subunit A [Yersinia pestis CA88-4125] gi|152960438|gb|ABS47899.1| DNA topoisomerase IV, A subunit [Yersinia pseudotuberculosis IP 31758] gi|162351819|gb|ABX85767.1| DNA topoisomerase IV, A subunit [Yersinia pestis Angola] gi|165912192|gb|EDR30830.1| DNA topoisomerase IV, A subunit [Yersinia pestis biovar Orientalis str. IP275] gi|165923071|gb|EDR40222.1| DNA topoisomerase IV, A subunit [Yersinia pestis biovar Orientalis str. F1991016] gi|165992192|gb|EDR44493.1| DNA topoisomerase IV, A subunit [Yersinia pestis biovar Antiqua str. E1979001] gi|166206947|gb|EDR51427.1| DNA topoisomerase IV, A subunit [Yersinia pestis biovar Antiqua str. B42003004] gi|166963077|gb|EDR59098.1| DNA topoisomerase IV, A subunit [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167051969|gb|EDR63377.1| DNA topoisomerase IV, A subunit [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167055913|gb|EDR65694.1| DNA topoisomerase IV, A subunit [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169749447|gb|ACA66965.1| DNA topoisomerase IV, A subunit [Yersinia pseudotuberculosis YPIII] gi|186699857|gb|ACC90486.1| DNA topoisomerase IV, A subunit [Yersinia pseudotuberculosis PB1/+] gi|229682231|gb|EEO78323.1| DNA topoisomerase IV subunit A [Yersinia pestis Nepal516] gi|229690153|gb|EEO82210.1| DNA topoisomerase IV subunit A [Yersinia pestis biovar Orientalis str. India 195] gi|229696931|gb|EEO86978.1| DNA topoisomerase IV subunit A [Yersinia pestis biovar Orientalis str. PEXU2] gi|229705477|gb|EEO91487.1| DNA topoisomerase IV subunit A [Yersinia pestis Pestoides A] gi|262360770|gb|ACY57491.1| DNA topoisomerase IV subunit A [Yersinia pestis D106004] gi|262364715|gb|ACY61272.1| DNA topoisomerase IV subunit A [Yersinia pestis D182038] gi|270336240|gb|EFA47017.1| DNA topoisomerase IV, A subunit [Yersinia pestis KIM D27] gi|294353197|gb|ADE63538.1| DNA topoisomerase IV subunit A [Yersinia pestis Z176003] gi|320016766|gb|ADW00338.1| DNA topoisomerase IV subunit A [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 757 Score = 526 bits (1356), Expect = e-147, Method: Compositional matrix adjust. Identities = 285/746 (38%), Positives = 446/746 (59%), Gaps = 22/746 (2%) Query: 12 LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71 L + + + L E YL Y++ I +RA+P + DG KPV RRI++AMSE+GL+ A Sbjct: 4 LTHDGAERLPLHTFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNNSAK 63 Query: 72 FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYR 130 FKKSAR VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S AA R Sbjct: 64 FKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMR 123 Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190 YTE+R+++ AE++L + + VD+ ++ EP + P++ PN+L NGT+GIAVGMAT Sbjct: 124 YTESRLSKYAEVLLGELAQGTVDWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATD 183 Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250 IP HNV+EI +A LALID P S+++LLE++ GPDFPT I+ R+ I + Y+ GRG Sbjct: 184 IPPHNVREIAQAVLALIDKPTTSLDELLEFVQGPDFPTEAEIITPRDDIRKIYQNGRGSV 243 Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-- 308 R+RA W E+ GS V+T +P+QV ++++E+IA + AK++P++ED+RDES + Sbjct: 244 RMRAVWKKED---GS--AVITALPHQVSGAKVLEQIANQMRAKKLPMVEDLRDESDHENP 298 Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368 R+V+ P+ +D D +M +F +D+E + +NMN++ + P V L IL EWL R Sbjct: 299 TRLVIVPRTNRVDLDQVMSHLFATTDLERSYRINMNMIGLDNRPSVKGLLEILTEWLVFR 358 Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQV 428 R+ + R +FR++ + +R+ IL+GLLIA+LNIDE+I IIR ED PKP+++ RFS++E Q Sbjct: 359 RQTVRNRLNFRLEKVLKRLHILEGLLIAFLNIDEVIHIIRTEDDPKPLLMQRFSISETQA 418 Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488 +AIL L+LR L KLEE +I+ E D L E++++ +LL S ++ I EI+ + Sbjct: 419 EAILELKLRHLAKLEEVKIRGEQDELAKERDQLQALLASERKLNTLIKKEIQADAAAYGD 478 Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548 RR+ E A KA + ++ EP+T+V+S GW+RS K H +D S L +K G Sbjct: 479 D-----RRSPLTERGEA-KAMSEHDIVPSEPVTIVLSEMGWVRSAKGHDIDPSGLSYKAG 532 Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608 DS + A + ++ + + G++Y L L S RG GE + + I + Sbjct: 533 DSFRAAARGMSNQPVVFIDSTGRSYALDPLTLPSARGQGEPLTGKLTPPPGATIEHVLMA 592 Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--DHVAVVGE 666 + KLL+ S G F+ ++++A R GKT + + K+ +++ G D + + Sbjct: 593 PDSQKLLMASDAGYGFVCTFNDLVAKNRAGKTMITLPENAKVLPPLEIYGPDDMLLSITA 652 Query: 667 NRKLLIFSIDQIPEMSRGKG---VRLQSYKDGGISDVICFKIC---EGLTWIDSAGRSYN 720 ++L+F + +PE+S+GKG V + + + D + + + + R Sbjct: 653 VGRMLMFPVADLPELSKGKGNKIVSIPAAQAAAGEDRLAWLFVLPPQTSITLHFGKRKLT 712 Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPR 746 DL + +RG GS +P+G R Sbjct: 713 LRPEDLQKFRAERGRKGSPLPRGLQR 738 >gi|194365062|ref|YP_002027672.1| DNA topoisomerase IV subunit A [Stenotrophomonas maltophilia R551-3] gi|194347866|gb|ACF50989.1| DNA topoisomerase IV, A subunit [Stenotrophomonas maltophilia R551-3] Length = 747 Score = 525 bits (1353), Expect = e-147, Method: Compositional matrix adjust. Identities = 282/735 (38%), Positives = 439/735 (59%), Gaps = 21/735 (2%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 + LR E YL Y++ + +RA+P + DG KPV RRII++MSE+GL+ + KKSAR V Sbjct: 15 LPLREYAERAYLDYSMYVVLDRALPFIGDGLKPVQRRIIYSMSELGLNAASKPKKSARTV 74 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQ 138 G+VIGK HPHGD + Y++LV +AQPF RYPLI GQGNFG+ D S AA RYTE+++T Sbjct: 75 GDVIGKYHPHGDSACYEALVLMAQPFSYRYPLIEGQGNFGSSDDPKSFAAMRYTESKLTP 134 Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198 +AE++L + + D+ ++ EP P++ P+LL NGT+GIAVGMAT +P HN+ E Sbjct: 135 IAEVLLGELGQGTTDWAPNFDGTLQEPTWMPARLPHLLLNGTTGIAVGMATDVPPHNLNE 194 Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258 I A L L+DNPE S+ L E++ GPD+P+ I+ + + Y G G R RA + Sbjct: 195 IVSALLHLLDNPEASVRDLCEHVQGPDYPSSAEIITAANDLRNMYETGNGSVRARATFTK 254 Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES--AEDVRIVLFPK 316 E + IVVT +P+QV S++IE+IA + AK++P LEDIRDES A VR+VL P+ Sbjct: 255 E-----ANNIVVTALPFQVSPSKVIEQIAAQMRAKKLPWLEDIRDESDHANPVRVVLVPR 309 Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376 + +D + LM +F +DME + +N+NV+ + PQV L +L EWL R + RR Sbjct: 310 SNRVDAEQLMGHLFATTDMERSYRVNLNVIGLDGRPQVKNLKMLLSEWLTFRSNTVTRRL 369 Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRL 436 R+Q ++RR+ +L+GLL+A+LN+DE+I IIR ED+PK +++RF L+++Q + IL +L Sbjct: 370 QHRLQKVERRLHLLEGLLVAFLNLDEVIHIIRTEDEPKAALIARFGLSDDQAEYILETKL 429 Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496 + L +LEE +I+ E D L E+EKI +L+S K + ++ IR+ E+ + + G R Sbjct: 430 KQLARLEEMKIRGEQDELAKEREKILGILDS-KTKLKKL---IRD--ELTADAKKFGDAR 483 Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALH 556 + +A +A + ++ EP+TVV+S +GWIR+ K H +D S L +++GD+L+ A+ Sbjct: 484 RSPLVQRQAAQAIDETELVPSEPMTVVMSEKGWIRAAKGHDIDASTLSYRDGDALQGAVR 543 Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLV 616 A +T ++ L ++G+AY+ P L S RG+GE + VT + + ++ Sbjct: 544 ARSTQQVAFLDSEGRAYSTPVHTLPSARGNGEPLTGRFSPAAGTSFVTLASAEPETRFVL 603 Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVAVVGENRKLLIF 673 S+ G F+ +I + GK L +S+ + +V V D + V + LL Sbjct: 604 ASTHGYGFVTRFENLIGRNKAGKAMLNLSAGSTVLTPSVVANVATDRIVAVTSSGNLLAI 663 Query: 674 SIDQIPEMSRGKGVRLQSYKDGGISD---VICFKICEGLTW-IDSAGRSYNRSENDLLGW 729 + + +PE+ +GKG ++ ++ V I G T + S R+ N+L + Sbjct: 664 AANDLPELDKGKGNKIIEIPKAKLATERVVAIVAISPGQTLQVRSGQRTMGLKFNELDAY 723 Query: 730 LGKRGGVGSLVPKGF 744 LG R G L+P+G+ Sbjct: 724 LGARATRGHLLPRGW 738 >gi|157372492|ref|YP_001480481.1| DNA topoisomerase IV subunit A [Serratia proteamaculans 568] gi|157324256|gb|ABV43353.1| DNA topoisomerase IV, A subunit [Serratia proteamaculans 568] Length = 757 Score = 525 bits (1353), Expect = e-147, Method: Compositional matrix adjust. Identities = 286/746 (38%), Positives = 450/746 (60%), Gaps = 22/746 (2%) Query: 12 LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71 L + V+ + L E YL Y++ I +RA+P + DG KPV RRII+AMSE+GL+ A Sbjct: 4 LTHDGVERLPLHTFTENAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLNNSAK 63 Query: 72 FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYR 130 FKKSAR VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S AA R Sbjct: 64 FKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMR 123 Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190 YTE+R+++ AE++L + + VD+ ++ EP + P++ PN+L NGT+GIAVGMAT Sbjct: 124 YTESRLSKYAEVLLAELGQGTVDWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATD 183 Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250 IP HNV+E+ AA+ALID P S+E+LLE++ GPD+PT I+ RE I + Y+ GRG Sbjct: 184 IPPHNVREVAAAAVALIDKPGASLEELLEFVQGPDYPTEAEIITPREEIRKIYQNGRGSV 243 Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-- 308 R+RA W E+ GS V+T +P+QV ++++E+IA + AK++P++ED+RDES + Sbjct: 244 RMRAVWSKED---GS--AVITALPHQVSGAKVLEQIASQMRAKKLPMVEDLRDESDHENP 298 Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368 R+V+ P++ +D D +M +F +D+E + +NMN++ + PQV L IL EWLA R Sbjct: 299 TRLVIVPRSNRIDLDQVMNHLFATTDLERSYRINMNMIGLDNRPQVKGLVEILTEWLAFR 358 Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQV 428 R+ + RR ++R++ + +R+ IL+GLL+A+LNIDE+I IIR+ED+PKPV++ RF +++ Q Sbjct: 359 RDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIHIIRSEDEPKPVLMQRFGISDTQA 418 Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488 +AIL L+LR L KLEE++I+ E D L E++++ +LL S ++ I EI+ + + Sbjct: 419 EAILELKLRHLAKLEEFKIRGEQDELAKERDQLQALLASERKLNTLIKKEIQADAQAYGD 478 Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548 RR+ E + A KA + + EP+T+V+S GW+RS K H +D S L +K G Sbjct: 479 D-----RRSPITERAEA-KAMSEHDFVPSEPVTIVLSEMGWVRSAKGHDIDPSGLSYKAG 532 Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608 DS + A T ++ + + G++Y L L S RG GE + + I + Sbjct: 533 DSFRSAARGKTNQPVVFIDSTGRSYALDPLTLPSARGQGEPLTGKLTPPPGATIEQVLMA 592 Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--DHVAVVGE 666 KLL+ S G F+ ++++A R GK + + K +++ G D + + Sbjct: 593 ADDQKLLMASDAGYGFVCTFNDLVARNRAGKVMITLPDNAKALAPMEIHGEDDMLLSITA 652 Query: 667 NRKLLIFSIDQIPEMSRGKG---VRLQSYKDGGISDVICFKIC---EGLTWIDSAGRSYN 720 ++L F + +P++S+GKG V + S + D + + + + R Sbjct: 653 AGRMLFFPVADLPQLSKGKGNKIVSIPSAQAASGEDKLAWLFVLPPQTSVTLHVGKRKLT 712 Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPR 746 DL + +RG G+ +P+G R Sbjct: 713 LRPEDLQKFRAERGRKGTSLPRGLQR 738 >gi|238793643|ref|ZP_04637266.1| DNA topoisomerase 4 subunit A [Yersinia intermedia ATCC 29909] gi|238727058|gb|EEQ18589.1| DNA topoisomerase 4 subunit A [Yersinia intermedia ATCC 29909] Length = 755 Score = 525 bits (1353), Expect = e-147, Method: Compositional matrix adjust. Identities = 284/746 (38%), Positives = 444/746 (59%), Gaps = 22/746 (2%) Query: 12 LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71 L + + + L E YL Y++ I +RA+P + DG KPV RRI++AMSE+GL+ A Sbjct: 4 LTHDGAERLPLHTFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNNSAK 63 Query: 72 FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYR 130 FKKSAR VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S AA R Sbjct: 64 FKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMR 123 Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190 YTE+R+++ AE++L + + VD+ ++ EP + P++ PN+L NGT+GIAVGMAT Sbjct: 124 YTESRLSKYAEVLLGELGQGTVDWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATD 183 Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250 IP HNV+EI +A LALID P S+E+LLE++ GPDFPT I+ R+ I + Y+ GRG Sbjct: 184 IPPHNVREIAQAVLALIDKPTASLEELLEFVQGPDFPTEAEIITPRDEIRKIYQNGRGSV 243 Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-- 308 R+RA W E+ GS V+T +P+QV ++++E+IA + AK++P++ED+RDES + Sbjct: 244 RMRALWKKED---GS--AVITALPHQVSGAKVLEQIASQMRAKKLPMVEDLRDESDHENP 298 Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368 R+V+ P+ +D D +M +F +D+E + +NMN++ + P V L IL EWL R Sbjct: 299 TRLVIVPRTNRVDLDQVMNHLFATTDLERSYRINMNMIGLDHRPSVKGLLEILTEWLVFR 358 Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQV 428 R+ + R ++R++ + +R+ IL+GLLIA+LNIDE+I IIR ED+PKP+++ F+++E Q Sbjct: 359 RQTVRNRLNYRLEKVLKRLHILEGLLIAFLNIDEVIHIIRTEDEPKPLLMQHFAISETQA 418 Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488 +AIL L+LR L KLEE +I+ E D L E++++ +LL S ++ I EI+ + Sbjct: 419 EAILELKLRHLAKLEEVKIRGEQDELAKERDQLQALLASERKLNTLIKKEIQADAAAYGD 478 Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548 RR+ E A KA + ++ EP+T+V+S GW+RS K H +D S L +K G Sbjct: 479 D-----RRSPLTERGEA-KAMSEHDIVPSEPVTIVLSEMGWVRSAKGHDIDPSGLSYKAG 532 Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608 DS + A + ++ + + G++Y L L S RG GE + + I + Sbjct: 533 DSFRAAARGMSNQPVVFIDSTGRSYALDPLTLPSARGQGEPLTGKLTPPPGATIEQVLMA 592 Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--DHVAVVGE 666 KLL+ S G F+ ++++A R GKT + + K +++ G D + + Sbjct: 593 PDDQKLLMASDAGYGFVCTFNDLVAKNRAGKTMITLPENAKALTPLEIHGPDDMLLSITA 652 Query: 667 NRKLLIFSIDQIPEMSRGKG---VRLQSYKDGGISDVICFKIC---EGLTWIDSAGRSYN 720 ++L+F + +PE+S+GKG V + S + D + + + + R Sbjct: 653 AGRMLMFPVADLPELSKGKGNKIVSIPSAQAAAGEDRLAWLFVLPPQTSITLHFGKRKLT 712 Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPR 746 DL + +RG GS +P+G R Sbjct: 713 LRPEDLQKFRAERGRKGSPLPRGLQR 738 >gi|52424930|ref|YP_088067.1| DNA topoisomerase IV subunit A [Mannheimia succiniciproducens MBEL55E] gi|52306982|gb|AAU37482.1| GyrA protein [Mannheimia succiniciproducens MBEL55E] Length = 748 Score = 525 bits (1353), Expect = e-147, Method: Compositional matrix adjust. Identities = 281/742 (37%), Positives = 446/742 (60%), Gaps = 24/742 (3%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 E ++ + LR E YL Y++ I +RA+P + DG KPV RRI++AMSE+GL+ A +KK Sbjct: 7 EGIEQMPLRTFTESAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKYKK 66 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTE 133 SAR VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S AA RYTE Sbjct: 67 SARTVGDVLGKFHPHGDTACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 126 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 +R+++ AEL+L + + VD++ ++ EP P++ P++L NGT+GIAVGMAT IP Sbjct: 127 SRLSKFAELLLGELGQGTVDYQPNFDGTILEPQYLPARLPHILLNGTTGIAVGMATDIPP 186 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ EI +AA+ L+DNP+ +++ +L + GPDFPT I+ +E I + Y GRG ++R Sbjct: 187 HNLNEIADAAVMLLDNPKATLDDILTLVQGPDFPTEAEIISPKEEIRKIYENGRGSVKMR 246 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRI 311 A W E+ I++T +P+Q S++I +IAE + AK++P++EDIRDE+ + VRI Sbjct: 247 AVWKKED-----GEIIITALPHQASPSKVIAQIAEQMTAKKLPMVEDIRDEADHENPVRI 301 Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371 VL P++ +D + LM +F +D+E + +NMN++ + P V L IL EWL+ RR Sbjct: 302 VLVPRSNRVDSEALMAHLFATTDLEKNYRVNMNMIGLDNKPAVKNLLQILTEWLSFRRST 361 Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431 + RR +R+ + R+ IL+GL+IAYLNIDE+I IIRNED+PKPV+++RF L++ Q +AI Sbjct: 362 VTRRLQYRLDKVLSRLHILQGLMIAYLNIDEVIHIIRNEDEPKPVLMARFELSDEQAEAI 421 Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491 LNLRLR L KLEE+++++E D L E+ +++ +L+S ++ I EI++ + ++ Sbjct: 422 LNLRLRHLAKLEEHELQAEKDQLEQERAQLEQILSSERRLNTLIKKEIQQDAKTYASP-- 479 Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551 RR+ E + A KA + MI EP+TV++S GW+R K H +D L++K GD Sbjct: 480 ---RRSPIVERAEA-KAISESEMIPAEPVTVILSEMGWVRCAKGHDIDPQGLNYKAGDKY 535 Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611 ++ + + + G++Y L +L S R GE + + L + + + Sbjct: 536 LAHACGKSSQPAVFIDSSGRSYALDPLSLPSARSQGEPLTGKLTLPAGASVDYLLIENEN 595 Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVAVVGENR 668 +LL+ S G FI + ++IA + GK + + K+ K + T VA+ R Sbjct: 596 QQLLMASDAGYGFICKFEDLIARNKAGKAVISLPENAKVLPPKNIENSTALLVALTAAGR 655 Query: 669 KLLIFSIDQIPEMSRGKGVRLQSYKDGGISD-----VICFKICEGLTWIDSAG-RSYNRS 722 +LIF + +P +S+GKG ++ + + V I E + + +G R Sbjct: 656 -MLIFPVKDLPSLSKGKGNKIVTIPAASAKERTDLLVKLLLISENSSLVFHSGKRKITLK 714 Query: 723 ENDLLGWLGKRGGVGSLVPKGF 744 DL + +RG G+ +P+G Sbjct: 715 PEDLQKYRAERGRKGTQLPRGL 736 >gi|50119304|ref|YP_048471.1| DNA topoisomerase IV subunit A [Pectobacterium atrosepticum SCRI1043] gi|49609830|emb|CAG73264.1| topoisomerase IV subunit A [Pectobacterium atrosepticum SCRI1043] Length = 756 Score = 525 bits (1353), Expect = e-146, Method: Compositional matrix adjust. Identities = 280/752 (37%), Positives = 457/752 (60%), Gaps = 35/752 (4%) Query: 12 LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71 + + ++++LR E YL Y++ I +RA+P + DG KPV RRI++AMSE+GL+ A Sbjct: 4 MTHDGAESLALRTFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAK 63 Query: 72 FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYR 130 FKKSAR VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S AA R Sbjct: 64 FKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMR 123 Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190 YTE+R+++ AE++L + + VD+ ++ EP + P++ PN+L NGT+GIAVGMAT Sbjct: 124 YTESRLSKYAEVLLSELGQGTVDYTPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATD 183 Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250 IP HNV+E+ AA+ L++NP+ S++ LL+++ GPDFPT I+ R+ + + Y+ GRG Sbjct: 184 IPPHNVREVAAAAVMLLENPKASLDDLLQHVQGPDFPTEAEIITPRDEVRKLYQNGRGSV 243 Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-- 308 R+RA W E+ +V+T +P+QV ++++E+IA + AK++P++ED+RDES + Sbjct: 244 RMRAVWKKED-----GDVVITALPHQVSGAKVLEQIASQMRAKKLPMVEDLRDESDHENP 298 Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368 R+VL P++ +D D +M +F +D+E + +NMN++ + P V L IL EWL R Sbjct: 299 TRLVLVPRSNRIDMDQVMNHLFATTDLEKSYRVNMNMIGLDGRPSVKGLVEILSEWLVFR 358 Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQV 428 R+ + RR ++R++ + +R+ IL+GLLIA+LNIDE+I IIR ED+PKPV++ +FSL+E Q Sbjct: 359 RDTVCRRLNYRLEKVLKRLHILEGLLIAFLNIDEVIHIIRTEDEPKPVLMRQFSLSETQA 418 Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488 +AIL L+LR L KLEE +I+ E +L E++++ +LL S ++ N I EI+ + + Sbjct: 419 EAILELKLRHLAKLEEMKIRGEQGDLAKERDQLQALLASERKLSNLIKKEIQSDAQAYGD 478 Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548 RR+ E A KA + + EP+T+V+S GW+RS K H +D + L +K G Sbjct: 479 D-----RRSPLHERGEA-KAMSEHDFVPSEPVTIVLSEMGWVRSAKGHDIDPTGLSYKAG 532 Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608 DS + A + ++ + + G++Y L ++ S RG GE + + I + Sbjct: 533 DSFRAAAKGKSNQPVVFIDSTGRSYALDPISMPSARGQGEPLTGKLTPPPGATIEQVLMA 592 Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH---VAVVG 665 LL+ S G F+ ++++A R GK + + K +++ G+ +A+ Sbjct: 593 ADDQPLLMASDAGYGFVCTFNDLVARNRAGKAIITLPDNAKALAPIEIKGEDNLLMAITA 652 Query: 666 ENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWI------DSAGRSY 719 R +L+F + +P++S+GKG ++ S IS + + LTW+ S + Sbjct: 653 AGR-MLLFPVSDLPQLSKGKGNKIVS-----ISSADFSEGKDRLTWLYLLPPQASVTLYF 706 Query: 720 NRSE-----NDLLGWLGKRGGVGSLVPKGFPR 746 + + N+L + G+RG G+L+ +G R Sbjct: 707 GKRKLVLRPNELQKYQGERGRKGTLL-RGLQR 737 >gi|332968503|gb|EGK07566.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Psychrobacter sp. 1501(2011)] Length = 766 Score = 525 bits (1352), Expect = e-146, Method: Compositional matrix adjust. Identities = 289/763 (37%), Positives = 456/763 (59%), Gaps = 31/763 (4%) Query: 3 VDNISNSNTLV-EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61 + NI S T++ E + S+ E+ YL YA+ I +RA+P + DG KPV RRII+AM Sbjct: 4 ISNIPPSATVIPTEAMDTRSVAEFTEQAYLNYAMYVIMDRALPHIADGLKPVQRRIIYAM 63 Query: 62 SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121 SE+GL KKSAR VG+V+GK HPHGD + Y+++V +AQPF RYPLI+GQGN+G+ Sbjct: 64 SELGLKSTTKPKKSARTVGDVLGKYHPHGDTACYEAMVLMAQPFSYRYPLITGQGNWGSP 123 Query: 122 DG-DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180 D S AA RYTEA+M+ A +L + + VD++D ++ EPV P++ PN+L NGT Sbjct: 124 DDPKSFAAMRYTEAKMSAYANTLLAELAQGTVDWQDNFDGSMQEPVTLPARLPNILLNGT 183 Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240 +GIAVGMAT IP HN+ E+ AA+ L+ NPE+S+++L + I PD PT I+ S++ + Sbjct: 184 TGIAVGMATDIPPHNLNEVVRAAVRLLKNPELSVKQLTQSIPAPDLPTPAEIITSKKDLQ 243 Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300 Y GRG +++RA + V++ + +++ +PYQV +++ E+IA+L+I K++P + D Sbjct: 244 AMYESGRGSYKMRAVYHVDKQEKN--LVIIDALPYQVSGNKIQEQIAKLMIEKKLPWVVD 301 Query: 301 IRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLD 358 I DES + RIVL ++ +D D +M +F +D+ET + +NMN++ + PQV L Sbjct: 302 IHDESDHENACRIVLELRSTRVDVDRVMSHLFASTDLETSYRVNMNMIGLNGKPQVKNLK 361 Query: 359 GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV 418 IL+EWL RR+V+ RR FR+ ID+R+ IL GLLIAYL+IDE+I IIR ED PK ++ Sbjct: 362 EILEEWLVSRRQVVTRRLLFRLDKIDKRLHILAGLLIAYLHIDEVIRIIREEDDPKTELM 421 Query: 419 SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE 478 +R+ L+E Q +AIL++RLR L +L+E ++++E D L AE+ I LL++ + N + Sbjct: 422 NRYDLSEVQANAILDIRLRQLARLQEIELRTEKDELEAERAIIQELLDNPESLTNLM--- 478 Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA-MIEKEPITVVISNRGWIRSLKSHS 537 ++E+ + + G R + V R + L+++ ++ EPIT ++S GWIR+ K H Sbjct: 479 ---IEELEADMKEHGNNRVSPV-VERNEATALKESDLVPSEPITAILSKAGWIRAAKGHD 534 Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLN 597 VD + + ++ GDS + + + + ++I ++ + G++Y + A L S RG G+ + ++ Sbjct: 535 VDAAGMSYRSGDSYQAHIRSKSNEKIYIMDSTGRSYNIDAHTLASARGQGDPLTSVLKPA 594 Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV- 656 + ++++ SS+G FI + N + GK + + K+ V + Sbjct: 595 SGASFEQLLAGEDEQRIILASSQGYGFINTLGNLETNQKAGKNVINFDQDAKLLKVAYID 654 Query: 657 --------TG------DHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDG-GISDVI 701 TG D +AVV LLIF ID++PE RGKG +L + KDG + V Sbjct: 655 AKPISDEDTGSEAQAQDQIAVVTSAGYLLIFDIDELPEQQRGKGNKLINLKDGEQVIAVT 714 Query: 702 CFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGF 744 + LT + + R DL + GKRG G +P+GF Sbjct: 715 PIHHSDSLT-VTAGKRHVTLKPMDLANYTGKRGNRGGQLPRGF 756 >gi|238762429|ref|ZP_04623400.1| DNA topoisomerase 4 subunit A [Yersinia kristensenii ATCC 33638] gi|238699414|gb|EEP92160.1| DNA topoisomerase 4 subunit A [Yersinia kristensenii ATCC 33638] Length = 757 Score = 525 bits (1352), Expect = e-146, Method: Compositional matrix adjust. Identities = 285/746 (38%), Positives = 444/746 (59%), Gaps = 22/746 (2%) Query: 12 LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71 L + + + L E YL Y++ I +RA+P + DG KPV RRI++AMSE+GL+ A Sbjct: 4 LTHDGAERLPLHTFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNNSAK 63 Query: 72 FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYR 130 FKKSAR VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S AA R Sbjct: 64 FKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMR 123 Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190 YTE+R+++ AE++L + + VD+ ++ EP + P++ PN+L NGT+GIAVGMAT Sbjct: 124 YTESRLSKYAEVLLGELGQGTVDWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATD 183 Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250 IP HNV+EI +A LALID P S+E+LLE++ GPDFPT I+ R+ I + Y+ GRG Sbjct: 184 IPPHNVREIAQAVLALIDKPTSSLEELLEFVQGPDFPTEAEIITPRDEIRKIYQNGRGSV 243 Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-- 308 R+RA W E+ GS V+T +P+QV ++++E+IA + AK++P++ED+RDES + Sbjct: 244 RMRALWKKED---GS--AVITALPHQVSGAKVLEQIANQMRAKKLPMVEDLRDESDHENP 298 Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368 R+V+ P+ +D D +M +F +D+E + +NMN++ + P V L IL EWL R Sbjct: 299 TRLVIVPRTNRVDLDQVMNHLFATTDLERSYRINMNMIGLDHRPTVKGLVEILTEWLVFR 358 Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQV 428 R+ + R ++R++ + +R+ IL+GLLIA+LNIDE+I IIR ED+PKP+++ F+++E Q Sbjct: 359 RQTVRNRLNYRLEKVLKRLHILEGLLIAFLNIDEVIHIIRTEDEPKPLLMQHFAISETQA 418 Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488 +AIL L+LR L KLEE +I+ E D L E++++ +LL S ++ I EI+ + Sbjct: 419 EAILELKLRHLAKLEEVKIRGEQDELAKERDQLQALLASERKLNTLIKKEIQADAAAYGD 478 Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548 RR+ E A KA + ++ EP+T+V+S GW+RS K H +D S L +K G Sbjct: 479 D-----RRSPLTERGEA-KAMSEHDIVPSEPVTIVLSEMGWVRSAKGHDIDPSGLSYKAG 532 Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608 DS + A + ++ + + G++Y L L S RG GE + + I + Sbjct: 533 DSFRAAARGKSNQPVVFIDSTGRSYALDPLTLPSARGQGEPLTGKLTPPPGATIEQVLMA 592 Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--DHVAVVGE 666 KLL+ S G F+ ++++A R GKT + + K +++ G D + + Sbjct: 593 PDDQKLLMASDAGYGFVCTFNDLVAKNRAGKTMITLPENAKALPPLEIYGPDDMLLSITA 652 Query: 667 NRKLLIFSIDQIPEMSRGKGVRLQSYK----DGGISDVICFKICEGLTWI--DSAGRSYN 720 ++L+F + +PE+S+GKG ++ S G ++ + T I R Sbjct: 653 AGRMLMFPVADLPELSKGKGNKIVSIPAADAAAGKDRLVWLFVLPPQTSITLHFGKRKLT 712 Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPR 746 DL + +RG GS +P+G R Sbjct: 713 LRPEDLQKFRAERGRKGSPLPRGLQR 738 >gi|226946369|ref|YP_002801442.1| DNA topoisomerase IV subunit A [Azotobacter vinelandii DJ] gi|226721296|gb|ACO80467.1| DNA topoisomerase IV, A subunit [Azotobacter vinelandii DJ] Length = 752 Score = 525 bits (1351), Expect = e-146, Method: Compositional matrix adjust. Identities = 280/749 (37%), Positives = 452/749 (60%), Gaps = 23/749 (3%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 + V+ SL E+ YL Y++ I +RA+P + DG KPV RRI++AMSE+GLD A KK Sbjct: 10 DGVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIVYAMSELGLDADAKHKK 69 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTE 133 SAR VG+V+GK HPHGD + Y+++V +AQPF RYPLI GQGN+G D S AA RYTE Sbjct: 70 SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLIDGQGNWGAPDDPKSFAAMRYTE 129 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 AR+++ AE++L + + D+ ++ EP V P++ PNLL NGT+GIAVGMAT +P Sbjct: 130 ARLSRYAEVLLAELGQGTADWVPNFDGTLDEPAVLPARLPNLLLNGTTGIAVGMATDVPP 189 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN++E+ A + L+D P+ ++ +L E+I GPDFPT IV R +++ Y GRG R+R Sbjct: 190 HNLREVAAACVRLLDEPQATVAQLCEHIPGPDFPTEAEIVTPRAELLKIYESGRGTLRMR 249 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRI 311 A + VE+ +V+T +P+QV ++++E+IA + AK++P++ D+RDES + RI Sbjct: 250 ALYRVED-----GDVVITALPHQVSGAKVLEQIAAQMQAKKLPMVADLRDESDHENPCRI 304 Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371 V+ P++ +D + LM+ +F +D+ET + +N+N++ + PQV L +L EWL R Sbjct: 305 VIIPRSNRVDVEGLMQHLFATTDLETSYRVNLNIIGLDGRPQVKNLRALLSEWLEFRVRT 364 Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431 + RR FR+ ++RR+ +L+GLLIA+LN+DE+I IIR+ED+PKPV++ RF+L+E Q D I Sbjct: 365 VRRRLQFRLDKVERRLHLLEGLLIAFLNLDEVIRIIRSEDQPKPVLIERFALSEAQADYI 424 Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491 L+ RLR L +LEE +I+ E + L E++K+ LL S + + E+ E + + Sbjct: 425 LDTRLRQLARLEEMKIRGEQEALAKERDKLLGLLGSEARLKKLVRKELLADAETYGDA-- 482 Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551 RR+ E + A +A + ++ EP+TVV+S +GW+R K H +D +AL +K GD+ Sbjct: 483 ---RRSPIVERAEA-RALSETELLPTEPVTVVLSEKGWVRCAKGHDIDPAALSYKSGDTF 538 Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611 K A + + + + G++Y+L A +L S RG GE + + + D Sbjct: 539 KAAAQGRSNQYAVFIDSSGRSYSLAAHSLPSARGQGEPLTGRLAPPPGAGFECVLLPDDE 598 Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVAVVGENR 668 ++ S G F+ + ++ A + GK L + + ++ + + D +A V Sbjct: 599 ALYVLASDAGYGFVAKGEDLQAKNKAGKALLSLPAGARVMAPRPLGDAGSDWLAAVTSEG 658 Query: 669 KLLIFSIDQIPEMSRGKGVRLQSYKDGGIS---DVIC--FKICEGLTWIDSAG-RSYNRS 722 +LL+F + ++P++++GKG R+ + ++ + +C + E T AG R+ + Sbjct: 659 RLLLFRVAELPQLAKGKGNRIIAIPGARVASREEYLCDFVVLSERATLQLQAGKRTLSLK 718 Query: 723 ENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751 DL + G+RGG G+ +P+GF R L Sbjct: 719 PADLEHYRGERGGRGNKLPRGFQRVDALL 747 >gi|288940944|ref|YP_003443184.1| DNA topoisomerase IV subunit A [Allochromatium vinosum DSM 180] gi|288896316|gb|ADC62152.1| DNA topoisomerase IV, A subunit [Allochromatium vinosum DSM 180] Length = 748 Score = 524 bits (1350), Expect = e-146, Method: Compositional matrix adjust. Identities = 288/754 (38%), Positives = 441/754 (58%), Gaps = 25/754 (3%) Query: 6 ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65 + ++ E ++ L+ E+ YL Y++ I +RA+P + DG KPV RRI++AMSE+G Sbjct: 1 MPDTAIYTAEGLERRPLKDFTEKAYLDYSMYVILDRALPHIGDGLKPVQRRILYAMSELG 60 Query: 66 LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124 L A FKKSAR VG+V+GK HPHGD + Y+++V +AQ F RYPLI GQGN+G+ D Sbjct: 61 LSATAKFKKSARTVGDVLGKFHPHGDSACYEAMVLMAQSFSYRYPLIDGQGNWGSPDDPK 120 Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184 S AA RYTE+R+T AEL+L D+ +D++ ++ EP + P++ PNLL NG +GIA Sbjct: 121 SFAAMRYTESRLTPYAELLLAEADQGTIDWQPNFDGTLDEPRLLPARLPNLLLNGATGIA 180 Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244 VGMAT IP+HN++E+ A + L+++P+ ++E L+ I PDFPT IV + I++ YR Sbjct: 181 VGMATDIPAHNLREVARACIHLLEHPDATLEDLVRIIPAPDFPTEAEIVTPADEILKLYR 240 Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304 G G R RAR+ E+ IV+T +PYQV SR++E+IA AK++P++ED RDE Sbjct: 241 TGNGSLRQRARYTREQ-----GDIVITALPYQVSGSRVLEQIAAQFNAKKLPMIEDFRDE 295 Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362 S + R+V+ P++ +D + LM +F +D+E + +N+N++++ P+VM L IL Sbjct: 296 SDHEYPTRLVIVPRSNRVDVERLMSHLFATTDLERSYRVNLNLIALNGRPRVMDLREILS 355 Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422 EWL +R E + RR R++ + R+ +L GLLIA+LN+DE+I I+R ED+P+PV++ RF Sbjct: 356 EWLIYRTETVRRRLQHRLEKVLERLHLLDGLLIAFLNLDEVIRIVRTEDEPRPVLMERFG 415 Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482 LTE Q D +LN RLR L +LEE +I++E L AE++ + LL + + EI Sbjct: 416 LTEPQADYVLNTRLRQLARLEEMKIRAEQAELAAERDGLQRLLGDERALKGLVRDEIAAD 475 Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQA-MIEKEPITVVISNRGWIRSLKSHSVDLS 541 E + + RR+ E RA A + + + EP+TVV+S +GW+R+ K H VD + Sbjct: 476 AERYGDA-----RRSPLVE--RAAAAAIDETELTPSEPLTVVLSEKGWVRAAKGHEVDAT 528 Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD 601 L ++ GD+ + + L + G++Y LPA S RG GE + +D Sbjct: 529 TLSYRAGDAFLSLARLRSNQTAVFLDSTGRSYALPAHTFPSARGQGEPLTGRLDPPPGAR 588 Query: 602 IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT---G 658 VT ++ + L+ S G FIV E+IA + GK L + ++ V++ G Sbjct: 589 FVTVLGDNAETRYLLASDAGYGFIVRFDELIAKPKGGKAVLTLPDGARLLDPVRIAGIEG 648 Query: 659 DHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDG-----GISDVICFKICEGLTW-I 712 VA V LL+F + ++PEM+RGKG ++ G G + + EG + Sbjct: 649 SSVAAVTTAGHLLLFPLAELPEMARGKGNKIIGIPAGRAGAEGERLIAVAVVGEGANLTV 708 Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746 S R DL + G+RG G L+P+GF R Sbjct: 709 LSGKRELTLKPADLALYRGERGRRGKLLPRGFQR 742 >gi|167035954|ref|YP_001671185.1| DNA topoisomerase IV subunit A [Pseudomonas putida GB-1] gi|166862442|gb|ABZ00850.1| DNA topoisomerase IV, A subunit [Pseudomonas putida GB-1] Length = 752 Score = 524 bits (1350), Expect = e-146, Method: Compositional matrix adjust. Identities = 287/755 (38%), Positives = 452/755 (59%), Gaps = 27/755 (3%) Query: 6 ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65 +S+S L + V+ SL E+ YL Y++ I +RA+P + DG KPV RRI++AMSE+G Sbjct: 1 MSDSLELSLDGVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIVYAMSELG 60 Query: 66 LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124 LD + KKSAR VG+V+GK HPHGD + Y+++V +AQPF RY L+ GQGN+G D Sbjct: 61 LDADSKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPDDPK 120 Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184 S AA RYTEAR+++ AE++L V + VD+ ++ EP V P++ PN+L NGT+GIA Sbjct: 121 SFAAMRYTEARLSRYAEVLLSEVGQGTVDWVPNFDGTLQEPAVLPARLPNILLNGTTGIA 180 Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244 VGMAT +P HN++E+ A + L+D P+ +IE+L E+I GPD+PT IV R I++ Y Sbjct: 181 VGMATDVPPHNLREVASACVRLLDEPKATIEQLCEHIQGPDYPTEAEIVTPRAEILKMYE 240 Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304 GRG R+RA + VE+ +VVT +P+QV ++++E+IA + AK++P++ D+RDE Sbjct: 241 SGRGSIRMRAVYRVED-----GDVVVTALPHQVSGAKVLEQIAAQMQAKKLPMVADLRDE 295 Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362 S + RIV+ P++ +D D LM+ +F +D+E+ + +N+N++ + PQ+ L IL Sbjct: 296 SDHENPCRIVIIPRSNRVDADELMQHLFATTDLESTYRVNVNIIGLDGRPQLKNLRTILV 355 Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422 EWL R + RR R+ +++R+ +L GLL A+LN+DE+I IIR E+ PK +++RF Sbjct: 356 EWLEFRTNTVRRRLQHRLDKVEKRLHLLDGLLTAFLNLDEVIHIIRTEEHPKQALIARFE 415 Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482 LTE Q D IL RLR L +LEE +I+ E D LL E+ K+ +LL S + + E+ + Sbjct: 416 LTEIQADYILETRLRQLARLEEMKIRGEQDELLKEQAKLQALLGSEAKLRKLVRSELIKD 475 Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542 E + RR+ E + A KA + ++ EP+TVV+S +GW+R K H +D + Sbjct: 476 AETYGDD-----RRSPIVERAEA-KALSENELMPTEPVTVVLSEKGWVRCAKGHDIDATG 529 Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602 L +K GD K A + +L+ + G++Y+LPA +L S RG GE + + Sbjct: 530 LSYKAGDGFKAAAAGRSNQFAVLIDSTGRSYSLPAHSLPSARGQGEPLTGRLTPPPGATF 589 Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGD 659 + D +V S G F+V+ ++ A + GK L + + K+ + V D Sbjct: 590 ECVLLPDDDALYVVASDAGYGFVVKGEDLQAKNKAGKGLLSLPNGAKVMTPRPVADREQD 649 Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTWI 712 +A V +LL+F + +P++ +GKG ++ + ++ ++D+ I EG T + Sbjct: 650 WLAAVTTEGRLLVFKVSDLPQLGKGKGNKIIGVPGDRVASREEFVTDLAV--IPEGATLV 707 Query: 713 DSAG-RSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746 AG R+ + +DL + G+RG GS +P+GF R Sbjct: 708 LQAGKRTLSLKGDDLEHYKGERGRRGSKLPRGFQR 742 >gi|53805051|ref|YP_113320.1| DNA topoisomerase IV subunit A [Methylococcus capsulatus str. Bath] gi|53758812|gb|AAU93103.1| DNA topoisomerase IV, A subunit [Methylococcus capsulatus str. Bath] Length = 744 Score = 524 bits (1350), Expect = e-146, Method: Compositional matrix adjust. Identities = 294/743 (39%), Positives = 442/743 (59%), Gaps = 23/743 (3%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 N + + LR E+ YL YA+ I +RA+P + DG KPV RRI++AMSE+GL + KKS Sbjct: 6 NYERIPLRDFTEKAYLDYAMYVILDRALPHIADGLKPVQRRIVYAMSELGLSAQSKPKKS 65 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEA 134 AR VG+V+GK HPHGD + Y+++V +AQPF RYPLI GQGN+G+ D S AA RYTEA Sbjct: 66 ARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLIDGQGNWGSPDDPKSFAAMRYTEA 125 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 R+T A+ +L +D VD+ ++ EP + P++ PNLL NG +GIAVGMAT IP H Sbjct: 126 RLTPYAQSLLSELDLGTVDWVPNFDGTLEEPQLLPARLPNLLLNGATGIAVGMATDIPPH 185 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 N++E+ EA + LID PE ++E+L I GPDFP ++ RE +++ Y+ G G R+RA Sbjct: 186 NLREVVEACILLIDRPEATVEELCGCIRGPDFPNEAELITPREELLKLYQTGSGAVRLRA 245 Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIV 312 R+ +E+ IVVT +PYQV ++L+E+IA + AK++PL+ED+RDES + R+V Sbjct: 246 RYELED-----GNIVVTALPYQVSGAKLMEQIAAQMQAKKLPLVEDLRDESDHENPTRLV 300 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 + PK+R ++ + LM +F +D+E + +N+N++ + PQV L IL EWL+ R E + Sbjct: 301 IMPKSRRVEVEPLMSHLFATTDLERSYRVNLNIIGLNGRPQVKNLREILTEWLSFRTETV 360 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAIL 432 RR R+ + R+ IL+GLL+A+L+IDE+IAIIR ED+PKPV+++RF LT+ Q +AIL Sbjct: 361 RRRLQHRLDKVLARLHILEGLLLAFLDIDEVIAIIRGEDEPKPVLMTRFGLTDLQAEAIL 420 Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492 LRLR L +LEE +I+ E + L E+ +++ L S + I E+R+ E F + Sbjct: 421 ELRLRHLARLEEIKIRGEQEALEQERARLERTLGSRAELDALIKQELRQDAEKFGDA--- 477 Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLK 552 RR+ +A +A A+I EP+TVV+S +GWIRS K H VD + L ++ GD Sbjct: 478 --RRSPIV-ARQASQALDTTALIASEPVTVVLSEKGWIRSAKGHEVDPATLSYRAGDGFL 534 Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612 A +T L + G++Y+L +L S RG GE + ++ V Sbjct: 535 CAALGRSTQPAYFLDSTGRSYSLAVHDLPSARGQGEPLTGRLNPPPGAIFVAVLAGSEED 594 Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT---GDHVAVVGENRK 669 L+ + G F+V+ E+ + R GKT L V K+ ++V GD +A V + Sbjct: 595 WYLLATDGGYGFLVQLGELGSKNRSGKTLLTVPDHAKVMPPLRVANPDGDRLAFVSAQGR 654 Query: 670 LLIFSIDQIPEMSRGKGVRLQSYKDGGISD-----VICFKICEGLTWIDSAG-RSYNRSE 723 LL++ ++IP +++GKG +L + V + G +AG R+ Sbjct: 655 LLVYPAEEIPRLNKGKGSKLIQIPPADLEARQDYLVAMAALPAGAALRATAGKRTLTLQP 714 Query: 724 NDLLGWLGKRGGVGSLVPKGFPR 746 DL + G RG G+ +P+GF R Sbjct: 715 ADLDHYRGSRGRRGNPLPRGFQR 737 >gi|87119249|ref|ZP_01075147.1| DNA topoisomerase IV subunit A [Marinomonas sp. MED121] gi|86165640|gb|EAQ66907.1| DNA topoisomerase IV subunit A [Marinomonas sp. MED121] Length = 735 Score = 524 bits (1349), Expect = e-146, Method: Compositional matrix adjust. Identities = 279/724 (38%), Positives = 439/724 (60%), Gaps = 23/724 (3%) Query: 35 LSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSV 94 + I +RA+P + DG KPV RRI++AMSE+GL A +KKSAR VG+V+GK HPHGD + Sbjct: 1 MYVILDRALPHIGDGLKPVQRRIVYAMSELGLKATAKYKKSARTVGDVLGKFHPHGDSAC 60 Query: 95 YDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQVAELILQGVDEDAVD 153 Y+++V +AQPF RYPL+ GQGN+G D S AA RYTE+R+++ ++++L+ V + VD Sbjct: 61 YEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKYSDVLLREVSQGTVD 120 Query: 154 FRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEIS 213 + ++ EP V P++ PNLL NGT+GIAVGMAT +P HN+ E+ A + L++NP Sbjct: 121 WVPNFDGTIKEPSVLPARLPNLLLNGTTGIAVGMATDVPPHNLTEVGNACIHLLNNPNSD 180 Query: 214 IEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEI 273 ++ L+ ++ GPD+PTGG I R I + Y G+G + RAR+ +EE IV+ E+ Sbjct: 181 LDDLMNFVQGPDYPTGGEITTPRNDIKKLYETGKGQIKARARYEMEE-----GDIVIKEL 235 Query: 274 PYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFPKNRSLDPDLLMESIFM 331 P+ S+++E+IA + AK++P++ D+RDES + R+VL PK+ +D + +M +F Sbjct: 236 PHYASGSKILEQIAAQMQAKKLPMIVDLRDESDHENPTRLVLVPKSNRVDVEAVMTHLFA 295 Query: 332 LSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILK 391 +D+E + +NMNV+ + +P V L L EWL R +V+ +R FR+ + R+ IL+ Sbjct: 296 STDLERSYRVNMNVIGLDGLPHVKGLKDFLTEWLKFRIDVVRKRLQFRLDKVLNRLHILE 355 Query: 392 GLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451 GLL+A+LNIDE+I IIRNE+KPK ++ RF LT+ Q +AIL L+LR L KLEE +IK E Sbjct: 356 GLLVAFLNIDEVIEIIRNEEKPKVELMLRFGLTDIQAEAILELKLRHLAKLEEMRIKGEQ 415 Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511 D L E++++++LL S ++ I+ EI+E + RRT E + +A + Sbjct: 416 DELEKERKQLEALLGSDRKLKKLISEEIQEAVDAHGDE-----RRTPIVE-RKESQAFSE 469 Query: 512 QAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGK 571 + ++ +P+TVVIS +GWIRS K H VD AL++K GD I+ + ++LL+++G+ Sbjct: 470 EDLLSNDPVTVVISKQGWIRSAKGHDVDPLALNYKSGDEFSISCKGRSNQTLVLLASNGR 529 Query: 572 AYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEI 631 +Y++ A L S RG GE I I L + IV A + L+ S G FI + ++ Sbjct: 530 SYSIKAHTLPSARGQGEPITGRISLEKDVTIVAAMLNADNTFYLIASDAGYGFIAKLGDL 589 Query: 632 IANTRKGKTFLKVSSEEKMKLVVKVT---GDHVAVVGENRKLLIFSIDQIPEMSRGKGVR 688 A + GK L + + K+ + V+ H+ V ++L F D +P+M++GKG + Sbjct: 590 HAKNKAGKATLTLPTSAKVLTPISVSDPASSHIVVTSNEGRMLAFKADSLPQMAKGKGNK 649 Query: 689 LQSYKDGGISD------VICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742 + S + + + + + L S R + ++ DL +LG+RG G +P+ Sbjct: 650 MISIQASRAASHEEYVVAMASVLADDLLQAHSGKRFMSFTQKDLNEYLGERGRRGLKLPR 709 Query: 743 GFPR 746 GF R Sbjct: 710 GFQR 713 >gi|270263145|ref|ZP_06191415.1| DNA topoisomerase 4 subunit A [Serratia odorifera 4Rx13] gi|270042833|gb|EFA15927.1| DNA topoisomerase 4 subunit A [Serratia odorifera 4Rx13] Length = 757 Score = 524 bits (1349), Expect = e-146, Method: Compositional matrix adjust. Identities = 287/752 (38%), Positives = 449/752 (59%), Gaps = 34/752 (4%) Query: 12 LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71 L + V+ + L E YL Y++ I +RA+P + DG KPV RRII+AMSE+GL+ A Sbjct: 4 LTHDGVERLPLHTFTENAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLNNSAK 63 Query: 72 FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYR 130 FKKSAR VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S AA R Sbjct: 64 FKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMR 123 Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190 YTE+R+++ AE++L + + VD+ ++ EP + P++ PN+L NGT+GIAVGMAT Sbjct: 124 YTESRLSKYAEVLLAELGQGTVDWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATD 183 Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250 IP HNV+E+ A +ALID P +E+LLE++ GPDFPT I+ R+ I + Y+ GRG Sbjct: 184 IPPHNVREVAAAVVALIDKPGAGLEELLEFVQGPDFPTEAEIITPRDEIRKIYQNGRGSV 243 Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-- 308 R+RA W E+ GS V+T +P+QV ++++E+IA + AK++P++ED+RDES + Sbjct: 244 RMRAIWKKED---GS--AVITALPHQVSGAKVLEQIASQMRAKKLPMVEDLRDESDHENP 298 Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368 R+V+ P++ +D D +M +F +D+E + +NMN++ + PQV L IL EWLA R Sbjct: 299 TRLVIVPRSNRIDLDQVMNHLFATTDLERSYRINMNMIGLDNRPQVKGLVEILTEWLAFR 358 Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQV 428 R+ + RR ++R++ + +R+ IL+GLL+A+LNIDE+I IIR+ED+PKPV++ RF +++ Q Sbjct: 359 RDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIHIIRSEDEPKPVLMQRFGISDTQA 418 Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488 +AIL L+LR L KLEE++I+ E D L E++ + +LL S ++ I EI+ + + Sbjct: 419 EAILELKLRHLAKLEEFKIRGEQDELAKERDHLQALLASERKLNTLIKKEIQADAQAYGD 478 Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548 RR+ E + A KA + + EP+T+V+S GW+RS K H +D S L +K G Sbjct: 479 D-----RRSPITERAEA-KAMSEHDFVPSEPVTIVLSEMGWVRSAKGHDIDPSGLSYKAG 532 Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608 DS + A T ++ + + G++Y L L S RG GE + + I + Sbjct: 533 DSYRSAARGKTNQPVVFIDSTGRSYALDPLTLPSARGQGEPLTGKLTPPPGATIEQVLMA 592 Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH---VAVVG 665 KLL+ S G F+ ++++A R GK + + K +++ GD +++ Sbjct: 593 ADDQKLLMASDAGYGFVCTFNDLVARNRAGKAMITLPDNAKALAPMEIHGDDDMLLSITA 652 Query: 666 ENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTW-----------IDS 714 R +L+F + +P++S+GKG ++ S I + LTW + Sbjct: 653 AGR-MLLFPVADLPQLSKGKGNKIVS-----IPAAQAASGEDKLTWLFVLPPQTSVTLHV 706 Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746 R DL + +RG G+ +P+G R Sbjct: 707 GKRKLTLRPEDLQKFRAERGRKGTSLPRGLQR 738 >gi|285018777|ref|YP_003376488.1| DNA topoisomerase iv subunit a protein [Xanthomonas albilineans GPE PC73] gi|283473995|emb|CBA16496.1| probable dna topoisomerase iv subunit a protein [Xanthomonas albilineans] Length = 747 Score = 524 bits (1349), Expect = e-146, Method: Compositional matrix adjust. Identities = 284/735 (38%), Positives = 439/735 (59%), Gaps = 21/735 (2%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 + LR E YL Y++ + +RA+P L DG KPV RRI++AMSE+GL+ A KKSAR V Sbjct: 15 LPLREYAERAYLDYSMYVVLDRALPFLGDGLKPVQRRIVYAMSELGLNAAAKPKKSARTV 74 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQ 138 G+VIGK HPHGD + Y++LV +AQPF RYPLI GQGNFG+ D S AA RYTE+++T Sbjct: 75 GDVIGKYHPHGDSACYEALVLMAQPFSYRYPLIEGQGNFGSTDDPKSFAAMRYTESKLTP 134 Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198 +AE++L + + VD+ ++ EP P++ P+LL NGT+GIAVGMAT +P HN+ E Sbjct: 135 IAEVLLGELGQGTVDWSPNFDGTMDEPTWMPARLPHLLLNGTTGIAVGMATDVPPHNLNE 194 Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258 I A + L+D+P+ SI L E++ GPD+P+ I+ + Y G G R RA + Sbjct: 195 IVSALIRLLDDPDASISDLCEHVRGPDYPSTAEIITPIADLRTIYATGHGSVRARATYEK 254 Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES--AEDVRIVLFPK 316 E IVVT +PYQV S++IE+IA+ + AK++P LEDIRDES A VR+VL P+ Sbjct: 255 ENAN-----IVVTALPYQVSPSKVIEQIAQQMRAKKLPWLEDIRDESDHANPVRVVLVPR 309 Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376 + +D + LM +F +D+E + +N+NV+ + PQV L +L+EWL R + + RR Sbjct: 310 SNRVDAEHLMGHLFATTDLERSYRINLNVIGLDGRPQVKNLKTLLEEWLRFRSDTVVRRL 369 Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRL 436 + R++ ++RR+ +L+GLL+A+LN+DE+I IIR+ED+PKP +++RF+L+E Q D IL RL Sbjct: 370 NHRLEKVERRLHLLEGLLVAFLNLDEVIRIIRSEDEPKPALIARFALSEEQTDYILETRL 429 Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496 R L +LEE +I+ E D L E+E++ ++L S K + ++ + E+ + + G R Sbjct: 430 RQLARLEEMKIRGEQDALAKEREQLQAVLAS-KTKLKKLIKD-----ELIADAKKFGDAR 483 Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALH 556 + A +A + ++ EP+T+V+S +GWIR+ KSH VD + L +++GDSL A+ Sbjct: 484 RSPLVQREAAQAIDETELVPSEPMTIVMSEKGWIRAAKSHDVDPAGLAYRDGDSLLAAVR 543 Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLV 616 +T ++ L ++G+AY+ A L S RG+GE + ++ ++++ Sbjct: 544 GRSTQQVAFLDSEGRAYSTLAHTLPSARGNGEPLTGRFSPAAGAAFQALATGENDTRVVL 603 Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVAVVGENRKLLIF 673 SS G FI + + + GK L ++ K+ V D + V LL F Sbjct: 604 ASSHGYGFITRFENLTSRNKAGKAMLNLTPNAKVLAPATVGNADTDRIVAVTSAGHLLAF 663 Query: 674 SIDQIPEMSRGKG---VRLQSYKDGGISDVICFKICEGLTWIDSAG-RSYNRSENDLLGW 729 + +PE+ +GKG + + K G V + G T + +G R+ + S DL + Sbjct: 664 PVADLPELDKGKGNKIIDIPKAKLGTERVVAIAAVTPGNTLLVKSGQRTMSLSFKDLDAY 723 Query: 730 LGKRGGVGSLVPKGF 744 LG R G L+P+G+ Sbjct: 724 LGARASRGGLLPRGW 738 >gi|300311159|ref|YP_003775251.1| DNA topoisomerase IV subunit A [Herbaspirillum seropedicae SmR1] gi|300073944|gb|ADJ63343.1| DNA topoisomerase IV (subunit A) protein [Herbaspirillum seropedicae SmR1] Length = 771 Score = 524 bits (1349), Expect = e-146, Method: Compositional matrix adjust. Identities = 284/696 (40%), Positives = 417/696 (59%), Gaps = 34/696 (4%) Query: 18 KAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSAR 77 ++++L E YL YA+S +K RA+PD+ DG KPV RRI++AM+E+ L+ A +KSA Sbjct: 18 ESLTLSTFAERAYLDYAISVVKGRALPDVADGQKPVQRRILYAMNELSLNSAAKPRKSAA 77 Query: 78 IVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMT 137 +VG+V+GKLHPHGDQSVYD+LVR+AQ F RYPLI G GNFG+ DGD AAA RYTEAR+T Sbjct: 78 VVGDVLGKLHPHGDQSVYDALVRMAQDFSLRYPLIDGHGNFGSRDGDGAAAMRYTEARLT 137 Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197 +++L+L +D V+F+ Y+ EP + P++ P LL NG SGIAVGMAT IPSHN+ Sbjct: 138 PISKLLLDEIDMGTVEFQPNYDGSTEEPRLLPARLPFLLLNGASGIAVGMATEIPSHNLT 197 Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257 E+ +AA+A+I NP+IS +L+E I GPDFP GG I+ + +I E Y+ GRG +VRARW Sbjct: 198 EVAKAAVAMIRNPKISHAELMELIPGPDFPGGGQIITPQATIAEMYQSGRGSLKVRARWK 257 Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELI-----IAKR-------------IPLLE 299 +E++ RG W V+TE+P V R++E+I EL + K+ + LL+ Sbjct: 258 IEDLARGQWQAVITELPPGVSSQRVLEEIEELTNPKVKLGKKSLTPEQQAQKAAILGLLD 317 Query: 300 DIRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPL 357 +RDES D VR+V PK+++ D M ++ + +ET LN+ ++ P+ L Sbjct: 318 AVRDESGRDAPVRLVFEPKSKNQDQTEFMNTLLAQTSLETSASLNLVMIGGDGRPRQKNL 377 Query: 358 DGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM 417 IL EW++ R E + RR+ FRMQ ++ R+ IL+G LNID++I IIR D+PKP + Sbjct: 378 TDILSEWISFRFETVTRRTQFRMQKVNDRIHILEGREAVLLNIDKVIRIIRESDEPKPAL 437 Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477 + F L++ Q + IL +RLR L +LE +I+ EL L EK + LL+ N + Sbjct: 438 IEAFRLSDRQAEDILEIRLRQLARLEAIKIQQELAELRNEKSTLQDLLD------NPSSM 491 Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHS 537 + +KEI + G R T E A++AT +Q +I+ EP+TV+IS +GW+R+ H Sbjct: 492 KKLVIKEIEGDAKTYGDARRTIIE--EAERATFEQKVID-EPVTVIISQKGWVRARTGHG 548 Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLN 597 D + FK GDSL A T D +L ++G+ YT+ L + RG G + L++L Sbjct: 549 HDATQFTFKAGDSLYGAFECRTVDNLLAFGSNGRVYTIAVNALPNARGDGVPVTTLLELA 608 Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV---V 654 I+ F + LL+ S FI + S++ + GK+F + E + L V Sbjct: 609 SGSSILHYFAGPADTTLLLASDAAAGFIAKASDMFGRVKGGKSFFTL-DEGALPLAPTPV 667 Query: 655 KVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRL 689 VA V N +LL+F +D++ +S G+GV L Sbjct: 668 PTDASAVACVSGNGRLLVFGLDEMKTLSSGGRGVNL 703 >gi|145597764|ref|YP_001161840.1| DNA topoisomerase IV subunit A [Yersinia pestis Pestoides F] gi|145209460|gb|ABP38867.1| DNA topoisomerase IV subunit A [Yersinia pestis Pestoides F] Length = 757 Score = 524 bits (1349), Expect = e-146, Method: Compositional matrix adjust. Identities = 284/746 (38%), Positives = 445/746 (59%), Gaps = 22/746 (2%) Query: 12 LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71 L + + + L E YL Y++ I +RA+P + DG KPV RRI++AMSE+GL+ A Sbjct: 4 LTHDGAERLPLHTFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNNSAK 63 Query: 72 FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYR 130 FKKSAR VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S AA R Sbjct: 64 FKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMR 123 Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190 YTE+R+++ AE++L + + VD+ ++ EP + P++ PN+L NGT+GIAVGMAT Sbjct: 124 YTESRLSKYAEVLLGELAQGTVDWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATD 183 Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250 IP HNV+EI +A LALID P S+++LLE++ GPDFPT I+ R+ I + Y+ GRG Sbjct: 184 IPPHNVREIAQAVLALIDKPTTSLDELLEFVQGPDFPTEAEIITPRDDIRKIYQNGRGSV 243 Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-- 308 R+RA W E+ GS V+T +P+QV ++++E+IA + AK++P++ED+RDES + Sbjct: 244 RMRAVWKKED---GS--AVITALPHQVSGAKVLEQIANQMRAKKLPMVEDLRDESDHENP 298 Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368 R+V+ P+ +D D +M +F +D+E + +NMN++ + P V L IL EWL R Sbjct: 299 TRLVIVPRTNRVDLDQVMSHLFATTDLERSYRINMNMIGLDNRPSVKGLLEILTEWLVFR 358 Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQV 428 R+ + R +FR++ + +R+ IL+GLLIA+LNIDE+I IIR ED PKP+++ RFS++E Q Sbjct: 359 RQTVRNRLNFRLEKVLKRLHILEGLLIAFLNIDEVIHIIRTEDDPKPLLMQRFSISETQA 418 Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488 +AIL L+LR L KLEE +I+ E D L E++++ +LL S ++ I EI+ + Sbjct: 419 EAILELKLRHLAKLEEVKIRGEQDELAKERDQLQALLASERKLNTLIKKEIQADAAAYGD 478 Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548 RR+ E A KA + ++ EP+T+V+S GW+RS K H + S L +K G Sbjct: 479 D-----RRSPLTERGEA-KAMSEHDIVPSEPVTIVLSEMGWVRSAKGHDIAPSGLSYKAG 532 Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608 DS + A + ++ + + G++Y L L S RG GE + + I + Sbjct: 533 DSFRAAARGMSNQPVVFIDSTGRSYALDPLTLPSARGQGEPLTGKLTPPPGATIEHVLMA 592 Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--DHVAVVGE 666 + KLL+ S G F+ ++++A R GKT + + K+ +++ G D + + Sbjct: 593 PDSQKLLMASDAGYGFVCTFNDLVAKNRAGKTMITLPENAKVLPPLEIYGPDDMLLSITA 652 Query: 667 NRKLLIFSIDQIPEMSRGKG---VRLQSYKDGGISDVICFKIC---EGLTWIDSAGRSYN 720 ++L+F + +PE+S+GKG V + + + D + + + + R Sbjct: 653 VGRMLMFPVADLPELSKGKGNKIVSIPAAQAAAGEDRLAWLFVLPPQTSITLHFGKRKLT 712 Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPR 746 DL + +RG GS +P+G R Sbjct: 713 LRPEDLQKFRAERGRKGSPLPRGLQR 738 >gi|238789170|ref|ZP_04632958.1| DNA topoisomerase 4 subunit A [Yersinia frederiksenii ATCC 33641] gi|238722702|gb|EEQ14354.1| DNA topoisomerase 4 subunit A [Yersinia frederiksenii ATCC 33641] Length = 757 Score = 523 bits (1348), Expect = e-146, Method: Compositional matrix adjust. Identities = 282/746 (37%), Positives = 446/746 (59%), Gaps = 22/746 (2%) Query: 12 LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71 L + + + L E YL Y++ I +RA+P + DG KPV RRI++AMSE+GL+ A Sbjct: 4 LTHDGAERLPLHTFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNNSAK 63 Query: 72 FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYR 130 FKKSAR VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S AA R Sbjct: 64 FKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMR 123 Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190 YTE+R+++ AE++L + + VD+ ++ EP + P++ PN+L NGT+GIAVGMAT Sbjct: 124 YTESRLSKYAEVLLGELGQGTVDWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATD 183 Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250 IP HNV+EI +A +ALID P S+++LLE++ GPDFPT I+ R+ I + Y+ GRG Sbjct: 184 IPPHNVREIAQAVIALIDKPATSLDELLEFVQGPDFPTEAEIITPRDEIRKIYQNGRGSV 243 Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-- 308 R+RA W E+ GS V+T +P+QV ++++E+IA + AK++P++ED+RDES + Sbjct: 244 RMRALWKKED---GS--AVITALPHQVSGAKVLEQIASQMRAKKLPMVEDLRDESDHENP 298 Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368 R+V+ P+ +D D +M +F +D+E + +NMN++ + P V L IL EWL R Sbjct: 299 TRLVIVPRTNRVDLDQVMNHLFATTDLERSYRINMNMIGLDHRPSVKGLLEILTEWLVFR 358 Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQV 428 R+ + R ++R++ + +R+ IL+GLLIA+LNIDE+I IIR ED+PKP+++ F+++E Q Sbjct: 359 RQTVRNRLNYRLEKVLKRLHILEGLLIAFLNIDEVIHIIRTEDEPKPLLMQHFAISETQA 418 Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488 +AIL L+LR L KLEE +I+ E D L E++++ +LL S ++ I EI+ + Sbjct: 419 EAILELKLRHLAKLEEMKIRGEQDELAKERDQLQALLASERKLNTLIKKEIQADAAAYGD 478 Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548 RR+ E A KA + ++ EP+T+V+S GW+RS K H +D + L +K G Sbjct: 479 D-----RRSPLTERGEA-KAMSEHDIVPSEPVTIVLSEMGWVRSAKGHDIDPTGLSYKAG 532 Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608 DS + A + ++ + + G++Y L L S RG GE + + I + Sbjct: 533 DSFRAAARGKSNQPVVFIDSTGRSYALDPLTLPSARGQGEPLTGKLTPPPGATIEQVLMA 592 Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--DHVAVVGE 666 + KLL+ S G F+ ++++A R GKT + + K+ +++ G D + + Sbjct: 593 PDSQKLLMASDAGYGFVCTFNDLVAKNRAGKTMITLPENAKVLPPLEIYGPDDMLLSITA 652 Query: 667 NRKLLIFSIDQIPEMSRGKGVRLQSYK----DGGISDVICFKICEGLTWI--DSAGRSYN 720 ++L+F + +PE+S+GKG ++ S G ++ + T I R Sbjct: 653 AGRMLMFPVADLPELSKGKGNKIVSIPAADAAAGKDRLVWLFVLPPQTSITLHFGKRKLT 712 Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPR 746 DL + +RG GS +P+G R Sbjct: 713 LRPEDLQKFRAERGRKGSPLPRGLQR 738 >gi|85058253|ref|YP_453955.1| DNA topoisomerase IV subunit A [Sodalis glossinidius str. 'morsitans'] gi|84778773|dbj|BAE73550.1| DNA topoisomerase IV subunit A [Sodalis glossinidius str. 'morsitans'] Length = 757 Score = 523 bits (1348), Expect = e-146, Method: Compositional matrix adjust. Identities = 277/745 (37%), Positives = 446/745 (59%), Gaps = 24/745 (3%) Query: 12 LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71 L + + ++L E YL Y++ I +RA+P + DG KPV RRI++AMSE+GL+ A Sbjct: 4 LTHDGAERLALHKFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNANAK 63 Query: 72 FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYR 130 +KKSAR VG+V+GK HPHGD + Y+++V +AQPF RYP++ GQGN+G D S AA R Sbjct: 64 YKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPMVDGQGNWGAPDDPKSFAAMR 123 Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190 YTE+R+++ AE++L + + VD+ ++ EP + P++ PN+L NGT+GIAVGMAT Sbjct: 124 YTESRLSRYAEVLLGELGQGTVDYVPNFDGTLDEPKMLPARLPNVLLNGTTGIAVGMATD 183 Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250 IP HNV E+ AA+AL+ NP ++E+LLE++ GPDFPT I+ ++ + + Y GRG Sbjct: 184 IPPHNVNEVAAAAIALLGNPAATLEQLLEHVKGPDFPTEAEIITPQDDLRKIYHTGRGSV 243 Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-- 308 R+RA W VE+ V++ +P+QV ++++E+IA + AK++P++ED+RDES + Sbjct: 244 RMRALWTVED-----GEAVISALPHQVSGAKVLEQIANQMRAKKLPMVEDLRDESDHENP 298 Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368 R+V+ P++ +D +M +F +D+E + +NMN++ + P V L IL EWL +R Sbjct: 299 TRLVIVPRSNRVDLTQVMNHLFATTDLERSYRVNMNMIGLDGRPAVKNLHEILSEWLVYR 358 Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQV 428 R+ + RR +FR++ + RR+ IL GLL+AYLN+DE+I IIR +D+PK V++ RF L+E Q Sbjct: 359 RDTVRRRLNFRLEKVLRRLHILTGLLVAYLNLDEVIHIIRTKDEPKQVLMQRFELSETQA 418 Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488 DAIL L+LR L KLEE +++ E D L E++KI ++L S ++ N + EI + Sbjct: 419 DAILELKLRHLAKLEEMKLRGEQDELEKERDKIQAILASERKLSNLLKKEIEADDAAYGD 478 Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548 + RR+ E A KA + ++ EP+TV++S GW+RS K H +D S L ++ G Sbjct: 479 A-----RRSPLIERGEA-KALSENELMPSEPVTVILSTMGWVRSAKGHDIDPSGLGYRSG 532 Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608 D+ ++ + ++ + + G++Y L L S RG GE + + L + Sbjct: 533 DNYLSSVRGKSNQPVVFIDSTGRSYALEPACLPSARGQGEPLTGKLTLPPGAAVEQMLTG 592 Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--DHVAVVGE 666 KLL+ S G F+ S+++A R GK L + K+ + + G D + + E Sbjct: 593 ADERKLLMASDAGYGFVCSFSDLVARNRAGKALLTLPENAKVMPPLWLNGAADKLLALTE 652 Query: 667 NRKLLIFSIDQIPEMSRGKGVRLQSYKDGG-------ISDVICFKICEGLTWIDSAGRSY 719 +LL+F +D +P++S+GKG ++ S ++ + +T+ + Sbjct: 653 AGRLLMFPVDDLPQLSKGKGNKIISIPSADAAAGKDRLAGLYLLSTKASVTFYVGKRKLT 712 Query: 720 NRSENDLLGWLGKRGGVGSLVPKGF 744 R E DL + +RG G+L+P+G Sbjct: 713 LRPE-DLQKFSAERGRKGTLLPRGL 736 >gi|237807238|ref|YP_002891678.1| DNA topoisomerase IV subunit A [Tolumonas auensis DSM 9187] gi|237499499|gb|ACQ92092.1| DNA topoisomerase IV, A subunit [Tolumonas auensis DSM 9187] Length = 759 Score = 523 bits (1347), Expect = e-146, Method: Compositional matrix adjust. Identities = 276/746 (36%), Positives = 452/746 (60%), Gaps = 26/746 (3%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 E V+ LR E+ YL Y++ I +RA+P + DG KPV RRI++AMSE+GL + KK Sbjct: 9 EGVERQPLRTFTEQAYLNYSMYVIMDRALPHIADGLKPVQRRIVYAMSELGLSALSKHKK 68 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTE 133 SAR VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S AA RYTE Sbjct: 69 SARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 128 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 AR+++ +EL+L +++ V+++ ++ EP + P++ P++L NG +GIAVGMAT IP Sbjct: 129 ARLSRFSELLLSELEQGTVEWQPNFDGTMQEPQILPARLPHILLNGITGIAVGMATDIPP 188 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HNV+E+ +A + L++ P+ +I LLE++ GPD+PT I+ R I + Y G+G + R Sbjct: 189 HNVREVAQACITLLERPDATISDLLEHVQGPDYPTKAEIITPRSEIRKIYESGKGSIKAR 248 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRI 311 A + +E+ IV+T +P+Q +++IE+IA + AK++P++ D+RDES + R+ Sbjct: 249 AVYHMED-----GDIVITALPHQASGAKIIEQIANQMQAKKLPMVSDLRDESDHENPTRL 303 Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371 V+ P++ +D + LM+ +F +D+E + +N+N+L M PQV L IL EWLA RRE Sbjct: 304 VIIPRSNRIDVEQLMQHLFASTDLEKSYRVNLNMLGMDHRPQVKNLLTILTEWLAFRRET 363 Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431 + RR FR+ + R+ IL GLLIAYLNIDE+IAIIRNED+PK ++ RF L+E Q DAI Sbjct: 364 VRRRLQFRLDKVLNRLHILDGLLIAYLNIDEVIAIIRNEDEPKKELMRRFGLSEIQADAI 423 Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491 L+L+LR L KLEE++I+ E D L E++++++LL S ++ N + EI+ E + Sbjct: 424 LDLKLRHLAKLEEFKIRGEQDELAKERDQLEALLGSARKLGNLLKKEIQADAEKYGDD-- 481 Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551 RR+ E A + T ++ + E +TVV+S GW+R+ K H VD+ L++K GD Sbjct: 482 ---RRSPLVERQEAKQLT-EKELTPSELVTVVVSEMGWVRAAKGHDVDVQGLNYKAGDGY 537 Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611 ++ + + + ++ G+ Y+L A L S RG GE + + + + + Sbjct: 538 LVSAQGRSNQQTVFMTNLGRTYSLEAHTLPSARGQGEPLTGKLSFTAGEQTRYVLLGNED 597 Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVAVVGENR 668 + L+ S G F+ E +++I+ + GK L + ++ +L K D + +V N Sbjct: 598 ERYLICSDAGYGFLCEYNDLISKNKNGKALLTLPEGAQVLPPQLTAKQDDDALCLVISNE 657 Query: 669 -KLLIFSIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTWIDSAGRSYN 720 ++L+F ++ +P++ +GKG +L + ++ ++ V K + +T + + R Sbjct: 658 GRMLLFPLNTLPQLGKGKGNKLIGIPADKVASREEFVTHVAVVKADQAVT-LYAGKRKLT 716 Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPR 746 D++ + G+RG G+ +P+G R Sbjct: 717 LKPADMVLYHGERGRRGAKLPRGLQR 742 >gi|317493407|ref|ZP_07951828.1| DNA topoisomerase IV [Enterobacteriaceae bacterium 9_2_54FAA] gi|316918350|gb|EFV39688.1| DNA topoisomerase IV [Enterobacteriaceae bacterium 9_2_54FAA] Length = 759 Score = 523 bits (1347), Expect = e-146, Method: Compositional matrix adjust. Identities = 274/746 (36%), Positives = 445/746 (59%), Gaps = 22/746 (2%) Query: 12 LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71 L+ + + +L E YL Y++ I +RA+P + DG KPV RRI++AMSE+GL+ A Sbjct: 4 LIHDGSERQALHTFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNNSAK 63 Query: 72 FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYR 130 FKKSAR VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S AA R Sbjct: 64 FKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMR 123 Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190 YTE+R+++ AE++L + + VD+ ++ EP P++ PN+L NGT+GIAVGMAT Sbjct: 124 YTESRLSKYAEVLLGELGQGTVDYTPNFDGTLQEPKTLPARLPNILLNGTTGIAVGMATD 183 Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250 IP HNV+E+ +A + LID P ++++ +LE++ GPD+PT I+ RE I + YR GRG Sbjct: 184 IPPHNVRELAKALVELIDKPSMTLDDILEHVQGPDYPTEAEIITPREEIRKIYRTGRGSV 243 Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-- 308 R+RA W E+ +V++ +P+Q ++++E+IA + AK++P++ED+RDES + Sbjct: 244 RMRAIWKKED-----GEVVISALPHQTSGAKVLEQIASQMRAKKLPMVEDLRDESDHENP 298 Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368 R+V+ P++ +D D +M +F +D+E + +NMN++ + P V L IL EWLA+R Sbjct: 299 TRLVIVPRSNRVDMDQVMAHLFATTDLEKSYRINMNMIGLDNRPAVKNLLEILTEWLAYR 358 Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQV 428 R+ + RR ++R++ + +R+ IL+GLL+A+LNIDE+I IIR ED+PKP ++ RF ++E Q Sbjct: 359 RDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIHIIRTEDEPKPKLIERFGISETQA 418 Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488 +AIL L+LR L KLEE +I+ E D L E++ + +LL S ++ I EI+ + + Sbjct: 419 EAILELKLRHLAKLEEVKIRGEQDELAKERDHLQALLASERKLNTLIKKEIQADAQAYGD 478 Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548 RR+ E A KA + I EP+T+V+S GW+RS K H +D + L +K G Sbjct: 479 D-----RRSPLQEREEA-KAMSEHDFIPSEPVTIVLSEGGWVRSAKGHDIDPTGLSYKAG 532 Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608 DS + A + ++ + + G++Y L L S RG GE + + I + Sbjct: 533 DSFRAAARGKSNQPVVFIDSTGRSYALDPTTLPSARGQGEPLTGKLTPPPGATIEQVLMA 592 Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--DHVAVVGE 666 KLL+ S G F+ ++++A R GK + + K +++ G D + + + Sbjct: 593 ADDQKLLMASDAGYGFVCTFNDLVARNRAGKAMITLPENAKALPPIEINGADDMLLAITQ 652 Query: 667 NRKLLIFSIDQIPEMSRGKG---VRLQSYKDGGISDVICFKIC---EGLTWIDSAGRSYN 720 ++L+F ++ +P++S+GKG V + S + D + + + + R Sbjct: 653 AGRMLMFPVNDLPQLSKGKGNKIVSIPSAQAASGEDKLAWLFVLPPQTSITVHVGKRKLV 712 Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPR 746 +L + +RG G+L+P+G R Sbjct: 713 MKPQELQKFRAERGRKGTLLPRGLQR 738 >gi|238782862|ref|ZP_04626891.1| DNA topoisomerase 4 subunit A [Yersinia bercovieri ATCC 43970] gi|238716285|gb|EEQ08268.1| DNA topoisomerase 4 subunit A [Yersinia bercovieri ATCC 43970] Length = 757 Score = 523 bits (1347), Expect = e-146, Method: Compositional matrix adjust. Identities = 283/746 (37%), Positives = 441/746 (59%), Gaps = 22/746 (2%) Query: 12 LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71 L + + + L E YL Y++ I +RA+P + DG KPV RRI++AMSE+GL A Sbjct: 4 LTHDGAERLPLHTFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLSNSAK 63 Query: 72 FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYR 130 FKKSAR VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S AA R Sbjct: 64 FKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMR 123 Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190 YTE+R+++ AE++L + + VD+ ++ EP + P++ PN+L NGT+GIAVGMAT Sbjct: 124 YTESRLSKYAEVLLGELGQGTVDWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATD 183 Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250 IP HNV+EI +A +ALID P S+E+LLE++ GPDFPT I+ R I + Y GRG Sbjct: 184 IPPHNVREIAQAVIALIDKPATSLEELLEFVQGPDFPTEAEIITPRNEIRKIYENGRGSV 243 Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-- 308 R+RA W E+ GS V+T +P+QV ++++E+IA + AK++P++ED+RDES + Sbjct: 244 RMRALWKKED---GS--AVITALPHQVSGAKVLEQIASQMRAKKLPMVEDLRDESDHENP 298 Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368 R+V+ P+ +D D +M +F +D+E + +NMN++ + P V L IL EWL R Sbjct: 299 TRLVIVPRTNRVDLDQVMNHLFATTDLERSYRINMNMIGLDHRPTVKGLLEILTEWLVFR 358 Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQV 428 R+ + R ++R++ + +R+ IL+GLLIA+LNIDE+I IIR ED+PKP+++ F+++E Q Sbjct: 359 RQTVRNRLNYRLEKVLKRLHILEGLLIAFLNIDEVIHIIRTEDEPKPLLMQHFAISETQA 418 Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488 +AIL L+LR L KLEE +I+ E D L E++++ +LL S ++ I EI+ + Sbjct: 419 EAILELKLRHLAKLEEVKIRGEQDELAKERDQLQALLASERKLNTMIKKEIQADAAAYGD 478 Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548 RR+ E + A KA ++ EP+T+V+S GW+RS K H +D S L +K G Sbjct: 479 D-----RRSPLTERAEA-KAMSDHDIVPSEPVTIVLSEMGWVRSAKGHDIDPSGLSYKAG 532 Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608 DS + A + ++ + + G++Y L L S RG GE + + I + Sbjct: 533 DSFRAAARGMSNQPVVFIDSTGRSYALDPLTLPSARGQGEPLTGKLTPPPGATIEQVLMA 592 Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--DHVAVVGE 666 KLL+ S G F+ ++++A R GKT + + K +++ G D + + Sbjct: 593 PDDQKLLMASDAGYGFVCTFNDLVAKNRAGKTMITLPENAKALPPLEIYGPDDMLLSITA 652 Query: 667 NRKLLIFSIDQIPEMSRGKG---VRLQSYKDGGISDVICFKIC---EGLTWIDSAGRSYN 720 ++L+F + +PE+S+GKG V + S + D + + + + R Sbjct: 653 AGRMLMFPVADLPELSKGKGNKIVSIPSAQAAAGEDRLAWLFVLPPQTSVTLHFGKRKLT 712 Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPR 746 DL + +RG GS +P+G R Sbjct: 713 LRPEDLQKFRAERGRKGSPLPRGLQR 738 >gi|254516085|ref|ZP_05128145.1| DNA topoisomerase IV, A subunit [gamma proteobacterium NOR5-3] gi|219675807|gb|EED32173.1| DNA topoisomerase IV, A subunit [gamma proteobacterium NOR5-3] Length = 749 Score = 523 bits (1346), Expect = e-146, Method: Compositional matrix adjust. Identities = 285/754 (37%), Positives = 449/754 (59%), Gaps = 26/754 (3%) Query: 6 ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65 +S+++++ ++ ++ +SL+ E+ YL Y++ I +RA+P + DG KPV RRI++AMSE+G Sbjct: 1 MSDTSSIDDDGIEGISLKQYAEKAYLDYSMYVILDRALPHIGDGLKPVQRRIVYAMSELG 60 Query: 66 LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124 L A +KKSAR VG+VIGK HPHGD + Y+++V +AQ F RYPL+ GQGN+G D Sbjct: 61 LKSTAKYKKSARTVGDVIGKFHPHGDSAAYEAMVLMAQNFSYRYPLVDGQGNWGAPDDPK 120 Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184 S AA RYTE+R+T A+++L + + VD+ ++ EP + P++ PN+L NGT+GIA Sbjct: 121 SFAAMRYTESRLTAYADVLLGELGQGTVDWVPNFDGTMDEPSLLPAQVPNILLNGTTGIA 180 Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244 VGMAT IP HN++E+ AA+ L+D P+ S+ +L E I GPDFPT I+ + I + Y Sbjct: 181 VGMATDIPPHNLREVVTAAITLLDAPKTSLAELCEIIKGPDFPTEAEIITPPQDIAQIYA 240 Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304 GRG R+RA W +E IVV+ +P+Q SR++E+IA+ + AK++P++ D+RDE Sbjct: 241 TGRGSLRMRAVWELEH-----GDIVVSALPHQASGSRVLEQIAQQMQAKKLPMVADLRDE 295 Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362 S + R+V+ P++ +D + LM +F +D+E + +N+N++ P V LDGIL Sbjct: 296 SDHENPTRLVIVPRSNRIDREGLMSHLFATTDLERTYRVNLNMIGTDGRPGVRSLDGILN 355 Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422 +WL RR+ + RR S+R++ ++RR+ IL+G L+AYLNIDE+I IIR E+ PK ++ RF Sbjct: 356 QWLKFRRDTVRRRLSYRLERVERRLHILQGYLVAYLNIDEVIHIIRTEEHPKQALMQRFE 415 Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482 +++ Q +AIL L+LR+L KLEE +I+ E D L E+E ++ L S + I E+ + Sbjct: 416 ISDVQAEAILELKLRNLAKLEEMKIRGEQDELEKEREWLEKTLGSDARLKTLIKKELTAI 475 Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542 E + RR+ A +A + ++ +PITVV+S +GWIR+ K H +D + Sbjct: 476 AEKYGDD-----RRSPLASREEA-RAFSELELMTADPITVVLSEKGWIRAAKGHDMDPAT 529 Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602 L +K GDS K+A + +++ + G+AYTL NL S RG GE + I+ Sbjct: 530 LSYKSGDSFKLAARGRSNQPAVIIDSTGRAYTLATHNLPSARGQGEPLTGRINPPSGAGF 589 Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT--GDH 660 + D+ + L+ S G F+ +E+ R GK L + + K+ V + Sbjct: 590 DGLMMGDNEQRCLLASDAGYGFVTTLAELQTKNRAGKAALSLPAGAKVVSPVPINEGAQW 649 Query: 661 VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISD-------VICFKICEGLT-WI 712 VA V +LL+F + +P +SRGKG ++ + D K +GLT W Sbjct: 650 VAAVSNEGRLLLFPLADLPSLSRGKGNKIIAIPGPRARDREEYVVATAVLKDDDGLTVWA 709 Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746 + R+E D + G+RG G+ +P+GF R Sbjct: 710 GKRHLTLKRAELD--HYRGERGRRGNKLPRGFQR 741 >gi|238028238|ref|YP_002912469.1| DNA topoisomerase IV subunit A [Burkholderia glumae BGR1] gi|237877432|gb|ACR29765.1| DNA topoisomerase IV, A subunit [Burkholderia glumae BGR1] Length = 774 Score = 523 bits (1346), Expect = e-146, Method: Compositional matrix adjust. Identities = 290/703 (41%), Positives = 425/703 (60%), Gaps = 32/703 (4%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 E ++L E YL YA+S +K RA+PD+ DG KPV RRI++AM+EMGL A K Sbjct: 17 EGGDVLTLGHYAESAYLGYAVSVVKGRALPDVCDGQKPVQRRILYAMNEMGLGNNAKPVK 76 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 SAR+VG+V+GK HPHGDQS YD+LVRLAQ F RYPLI GQGNFG+ DGD AAA RYTEA Sbjct: 77 SARVVGDVLGKYHPHGDQSAYDALVRLAQDFSMRYPLIDGQGNFGSRDGDGAAAMRYTEA 136 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 R+T +A+L+L +D+ VDF Y+ EP + P++ P +L NG SGIAVG+AT IPSH Sbjct: 137 RLTPIAQLLLDEIDQGTVDFMPNYDGSFDEPKLLPARLPFVLLNGASGIAVGLATEIPSH 196 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 N++EI AA+ALI NP+++ +L++ + GPDFP GG I+ S I +Y GRG +VRA Sbjct: 197 NLREIAAAAVALIRNPKLTHAELMQIVPGPDFPGGGQIISSDAEIAAAYETGRGSLKVRA 256 Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAK------------------RIP 296 RW +E++ RG W +VVTE+P +++E+I EL K + Sbjct: 257 RWKIEDLARGQWQLVVTELPPNTSGQKVLEEIEELTNPKIKAGKKTLSPEQVNTKKTMLD 316 Query: 297 LLEDIRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQV 354 LL+ +RDES +D VR+V PK+RSLD ++S+ + +E+ PLN+ ++ P Sbjct: 317 LLDAVRDESGKDAPVRLVFEPKSRSLDQAEFVQSLLAHTSLESNAPLNLVMIGNDGRPAQ 376 Query: 355 MPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK 414 L IL EW+ R+ L RR R+ +D R+ IL+G +I +LNIDE+I IIR D+PK Sbjct: 377 KGLGTILGEWVRFRQLTLTRRCRHRLGKVDDRIHILEGRMIVFLNIDEVIRIIRESDEPK 436 Query: 415 PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQ 474 ++S F LTE Q D IL +RLR L +LE+ +I+ EL+ L AEK K++ LL N+ Sbjct: 437 AALMSAFGLTERQADDILEIRLRQLARLEKIKIEKELEELRAEKAKLEELLA------NE 490 Query: 475 IACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK 534 A + +KEI + G R T + + +AT +A + EP+TVV+S +GW+R+LK Sbjct: 491 SAMKRLMIKEIEGDAKQYGDDRRTLIQQEK--RATF-EAKVVDEPVTVVVSQKGWVRALK 547 Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLI 594 H +D ++ FK GD L A T D ++ + G+ +++P L GRG G + LI Sbjct: 548 GHGLDPASFTFKAGDGLYAAFQCRTPDVLIAWGSKGRVHSVPVQVLPGGRGDGVPVTSLI 607 Query: 595 DLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV--SSEEKMKL 652 +L ++ F ++ +LL+ SS G FI + ++++ + GK F+ + +E + Sbjct: 608 ELESGTHLMHYFAANAEQQLLLASSNGFGFIAKLGDMVSRVKAGKAFMTIDEGAEPLAPM 667 Query: 653 VVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKD 694 V VA + +LL+F +D++ +S G+GV L + +D Sbjct: 668 PVMPLATQVACLSGQGRLLVFGLDEMKTLSAGGRGVILMALED 710 >gi|197364044|ref|YP_002143681.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|197095521|emb|CAR61086.1| topoisomerase IV subunit A [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 752 Score = 522 bits (1345), Expect = e-146, Method: Compositional matrix adjust. Identities = 274/739 (37%), Positives = 449/739 (60%), Gaps = 25/739 (3%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 ++L +E YL Y++ I +RA+P + DG KPV RRI++AMSE+GL+ A FKKSAR V Sbjct: 8 LALHEFMENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTV 67 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQ 138 G+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S AA RYTE+R+++ Sbjct: 68 GDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSK 127 Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198 AEL+L + + D+ ++ EP + P++ PN+L NGT+GIAVGMAT IP HN++E Sbjct: 128 YAELLLSELGQGTADWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLRE 187 Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258 + +AA+ LI+ P+ ++++LL+ + GPD+PT I+ R I + Y GRG R+RA W Sbjct: 188 VAKAAITLIEQPKTTLDQLLDIVQGPDYPTEAEIITPRAEIRKIYENGRGSVRMRAVWTK 247 Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFPK 316 E+ +V+T +P+QV ++++E+IA I K++P+++D+RDES + R+V+ P+ Sbjct: 248 ED-----GAVVITALPHQVSGAKVLEQIAAQIRNKKLPMVDDLRDESDHENPTRLVIVPR 302 Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376 + +D + +M +F +D+E + +N+N++ + P V L IL EWLA RR+ + RR Sbjct: 303 SNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEWLAFRRDTVRRRL 362 Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRL 436 ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF ++E Q +AIL L+L Sbjct: 363 NYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGISETQAEAILELKL 422 Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496 R L KLEE +I+ E D L E++++ +L S ++ + E++ + + RR Sbjct: 423 RHLAKLEEMKIRGEQDELEKERDQLQGILASERKMNTLLKKELQADSDAYGDD-----RR 477 Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALH 556 + E A KA + M+ EP+T+V+S GW+RS K H +D L++K GDS K A+ Sbjct: 478 SPLREREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAVK 536 Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLV 616 + ++ + T G++Y + L S RG GE + + L + + KLL+ Sbjct: 537 GKSNQPVVFIDTTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVEHMLMEGDDQKLLM 596 Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--KLVVKVTGDHVAVVGENRKLLIFS 674 S G F+ ++++A R GKT + + + LV+K D + + + ++L+F Sbjct: 597 ASDAGYGFVCTFNDLVARNRAGKTLITLPENAHVMPPLVIKDEHDMLLAITQAGRMLMFP 656 Query: 675 IDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLL 727 +D +P++S+GKG ++ + D G++ + LT I R +L Sbjct: 657 VDSLPQLSKGKGNKIINIPSAEAAKGDDGLAHLYVLPPQSTLT-IHVGKRKIKLRPEELQ 715 Query: 728 GWLGKRGGVGSLVPKGFPR 746 +G+RG G+L+ +G R Sbjct: 716 KVVGERGRRGTLM-RGLQR 733 >gi|71057503|emb|CAJ18964.1| topoisomerse IV subunit [Salmonella enterica subsp. enterica serovar Paratyphi A] Length = 752 Score = 522 bits (1344), Expect = e-145, Method: Compositional matrix adjust. Identities = 276/740 (37%), Positives = 449/740 (60%), Gaps = 29/740 (3%) Query: 23 RFALEE----RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78 R AL E YL Y++ I +RA+P + DG KPV RRI++AMSE+GL+ A FKKSAR Sbjct: 7 RLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSART 66 Query: 79 VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMT 137 VG+V+GK HPHGD++ Y+++V +AQPF RYPL+ GQGN+G D S AA RYTE+R++ Sbjct: 67 VGDVLGKYHPHGDRACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLS 126 Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197 + AEL+L + + D+ ++ EP + P++ PN+L NGT+GIAVGMAT IP HN++ Sbjct: 127 KYAELLLSELGQGTADWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLR 186 Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257 E+ +AA+ LI+ P+ ++++LL+ + GPD+PT I+ R I + Y GRG R+RA W Sbjct: 187 EVAKAAITLIEQPKTTLDQLLDIVQGPDYPTEAEIITPRAEIRKIYENGRGSVRMRAVWT 246 Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFP 315 E+ +V+T +P+QV ++++E+IA I K++P+++D+RDES + R+V+ P Sbjct: 247 KED-----GAVVITALPHQVSGAKVLEQIAAQIRNKKLPMVDDLRDESDHENPTRLVIVP 301 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 ++ +D + +M +F +D+E + +N+N++ + P V L IL EWLA RR+ + RR Sbjct: 302 RSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEWLAFRRDTVRRR 361 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435 ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF ++E Q +AIL L+ Sbjct: 362 LNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGISETQAEAILELK 421 Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495 LR L KLEE +I+ E D L E++++ +L S ++ + E++ + + R Sbjct: 422 LRHLAKLEEMKIRGEQDELEKERDQLQGILASERKMNTLLKKELQADSDAYGDD-----R 476 Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555 R+ E A KA + M+ EP+T+V+S GW+RS K H +D L++K GDS K A+ Sbjct: 477 RSPLREREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAV 535 Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615 + ++ + T G++Y + L S RG GE + + L + + KLL Sbjct: 536 KGKSNQPVVFIDTTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVEHMLMEGDDQKLL 595 Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--KLVVKVTGDHVAVVGENRKLLIF 673 + S G F+ ++++A R GKT + + + LV+K D + + + ++L+F Sbjct: 596 MASDAGYGFVCTFNDLVARNRAGKTLITLPENAHVMPPLVIKDEHDMLLAITQAGRMLMF 655 Query: 674 SIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDL 726 +D +P++S+GKG ++ + D G++ + LT I R +L Sbjct: 656 PVDSLPQLSKGKGNKIINIPSAEAAKGDDGLAHLYVLPPQSTLT-IHVGKRKIKLRPEEL 714 Query: 727 LGWLGKRGGVGSLVPKGFPR 746 +G+RG G+L+ +G R Sbjct: 715 QKVVGERGRRGTLM-RGLQR 733 >gi|293394327|ref|ZP_06638627.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Serratia odorifera DSM 4582] gi|291423305|gb|EFE96534.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Serratia odorifera DSM 4582] Length = 757 Score = 521 bits (1343), Expect = e-145, Method: Compositional matrix adjust. Identities = 290/748 (38%), Positives = 454/748 (60%), Gaps = 26/748 (3%) Query: 12 LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71 L + V+ + L E YL Y++ I +RA+P + DG KPV RRII+AMSE+GL+ A Sbjct: 4 LTHDGVERLPLHTFTENAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLNNSAK 63 Query: 72 FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYR 130 FKKSAR VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S AA R Sbjct: 64 FKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMR 123 Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190 YTE+R+++ AE++L + + VD+ ++ EP + P++ PN+L NGT+GIAVGMAT Sbjct: 124 YTESRLSKYAEVLLAELGQGTVDWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATD 183 Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250 IP HNV+E+ AA+ALID P S+++LLE++ GPDFPT I+ R+ I + Y+ GRG Sbjct: 184 IPPHNVREVAAAAVALIDKPGASLDELLEFVQGPDFPTEAEIITPRDEIRKIYQNGRGSV 243 Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-- 308 R+RA W E+ GS V+T +P+QV ++++E+IA + AK++P++ED+RDES + Sbjct: 244 RMRAVWKKED---GS--AVITALPHQVSGAKVLEQIASQMRAKKLPMVEDLRDESDHENP 298 Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368 R+V+ P++ +D + +M +F +D+E + +NMN++ + P V L I+ EWLA R Sbjct: 299 TRLVIVPRSNRVDLEQVMNHLFATTDLERSYRVNMNMIGLDNRPSVKGLVEIITEWLAFR 358 Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQV 428 R+ + RR ++R++ + +R+ IL+GLLIA+LNIDE+I IIR+ED+PKPV++ RF ++E Q Sbjct: 359 RDTVRRRLNYRLEKVLKRLHILEGLLIAFLNIDEVIHIIRSEDEPKPVLMQRFGISETQA 418 Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488 +AIL L+LR L KLEE +I+ E D L E++++ +LL S ++ I KEI + Sbjct: 419 EAILELKLRHLAKLEEMKIRGEQDELAKERDQLQALLASERKLNTLIK------KEIQAD 472 Query: 489 STDLG-RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKE 547 S G RR+ E + A KA + + EP+T+V+S GW+RS K H +D S L +K Sbjct: 473 SLAYGDERRSPLTERAEA-KAMSEHDFVPSEPVTIVLSEMGWVRSAKGHDIDPSGLSYKA 531 Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV 607 GD+ + A T ++ + + G++Y L L S RG GE + + I + Sbjct: 532 GDTFRAAARGKTNQPVVFIDSTGRSYALDPLTLPSARGQGEPLTGKLTPPPGATIEQVIM 591 Query: 608 YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGEN 667 KLL+ S G F+ ++++A R GK + + K +++ GD ++ Sbjct: 592 AADDQKLLMASDAGYGFVCTFNDLVARNRAGKVMITLPENAKALPPMEIHGDDDMLLSIT 651 Query: 668 R--KLLIFSIDQIPEMSRGKG---VRLQSYKDGGISDVICFKIC----EGLTWIDSAGRS 718 + ++L+F + +P++S+GKG V + S + DV+ + LT + R Sbjct: 652 KAGRMLMFPVADLPQLSKGKGNKIVSIPSAQAASGEDVLSWLFVLPPQTSLT-LHVGKRK 710 Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPR 746 DL + +RG G+L+P+G R Sbjct: 711 LTLRPEDLQKFRAERGRKGTLLPRGLQR 738 >gi|120555698|ref|YP_960049.1| DNA topoisomerase IV subunit A [Marinobacter aquaeolei VT8] gi|120325547|gb|ABM19862.1| DNA topoisomerase IV subunit A [Marinobacter aquaeolei VT8] Length = 768 Score = 521 bits (1343), Expect = e-145, Method: Compositional matrix adjust. Identities = 278/747 (37%), Positives = 446/747 (59%), Gaps = 24/747 (3%) Query: 13 VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72 +E + VSLR E+ YL Y++ I +RA+P++ DG KPV RRI++AMSE+GL + + Sbjct: 7 TDEGFERVSLRDYTEKAYLDYSMYVILDRALPNVGDGLKPVQRRIVYAMSELGLKSTSKY 66 Query: 73 KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRY 131 KKSAR VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G+ D S AA RY Sbjct: 67 KKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGSPDDPKSFAAMRY 126 Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191 TE+R+ AE++L + + VD+ ++ EP V P++ P++L NGT+GIAVGMAT I Sbjct: 127 TESRLAPFAEVLLSELGQGTVDWVPNFDGTMEEPSVLPARLPHVLLNGTTGIAVGMATDI 186 Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251 P HNV+E+ A + L+D P+ S+++L E+I GPDFPT I+ R+ + + Y GRG R Sbjct: 187 PPHNVREVTAACIRLLDQPDASVDELCEHIKGPDFPTRAEIITPRKDLRQMYETGRGSLR 246 Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--V 309 +RARW R + +V+T++P+QV +R++E+IA+ + K++P++ D+RDES + Sbjct: 247 MRARWI-----RENGEVVITDLPHQVSGNRVLEQIAQQMQTKKLPMVADLRDESDHENPT 301 Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369 R+V+ P++ +D D LM +F +D+E + +N+NV+ P V L IL EWLA R+ Sbjct: 302 RLVIVPRSNRVDLDGLMAHLFASTDLEKTYRVNINVIGNDGRPGVKGLYTILTEWLAFRK 361 Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429 + RR R+ + R+ +L+GLLIAYLNIDE+I IIR EDKPK +++RF L+ Q + Sbjct: 362 TTVTRRLQHRLDKVLARLHLLEGLLIAYLNIDEVIEIIRTEDKPKAELMARFGLSAEQAE 421 Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489 AIL L+LR L KLEE +I+ E D L AE++++ ++L S + I E+ + E F Sbjct: 422 AILELKLRHLAKLEEMKIRGEQDELSAERDELQAILGSEDRLRELIKTELEQDAETFGDD 481 Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549 RR+ E A +A + ++ +P+TVV+S++GW+R+ K H +D + L +K GD Sbjct: 482 -----RRSPIVEREEA-RAFSETDLVSNDPVTVVLSDKGWVRAAKGHDIDPAGLSYKSGD 535 Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609 +A + + L + G+AY+L A +L S RG GE + I+ + + Sbjct: 536 RFALAAKGRNNQQAIFLDSTGRAYSLMAHSLPSARGQGEPLTGRINPPSGATFSGLLMGN 595 Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD----HVAVVG 665 K L+V+ G F+ +++I+ R GK + V ++ V + ++A + Sbjct: 596 PERKTLLVTDGGYGFVTSLNDMISKNRAGKAVVSVPKGARIMPPVMIPETASTLYLAAIS 655 Query: 666 ENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISD----VICFKIC--EGLTWIDSAGRSY 719 ++L+F + ++PE+++GKG ++ S + + V+ + E + + R Sbjct: 656 NEGRMLVFPLSELPELAKGKGNKIISIPSARVQNREEYVVAVAVFGEEDQLEVKAGKRKL 715 Query: 720 NRSENDLLGWLGKRGGVGSLVPKGFPR 746 DL +LG+RG G +P+G R Sbjct: 716 GLRFGDLEHYLGERGRRGHKLPRGLQR 742 >gi|262166469|ref|ZP_06034206.1| topoisomerase IV subunit A [Vibrio mimicus VM223] gi|262026185|gb|EEY44853.1| topoisomerase IV subunit A [Vibrio mimicus VM223] Length = 762 Score = 521 bits (1342), Expect = e-145, Method: Compositional matrix adjust. Identities = 271/681 (39%), Positives = 425/681 (62%), Gaps = 17/681 (2%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 + V+ + LR E+ YL Y++ I +RA+P + DG KPV RRII+AMSE+GL A +KK Sbjct: 8 DGVEQLPLRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSASAKYKK 67 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTE 133 SAR VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S AA RYTE Sbjct: 68 SARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 127 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 A++++ AE++L + + V+++ ++ EP + P++ P++L NG +GIAVGMAT IP Sbjct: 128 AKLSKFAEILLSELGQGTVEWQPNFDGTMQEPKMLPARLPHILLNGVTGIAVGMATDIPP 187 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HNV+E+ +A + LID+P + L++Y+ GPDFPT I+ + + YR GRG R+R Sbjct: 188 HNVREVADATIHLIDHPSAPLTDLMQYVKGPDFPTEAEIITPTVELEKIYRSGRGSVRMR 247 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRI 311 A WC E GS IV+T +P+QV ++L+E+IA + AK++P++ED+RDES + RI Sbjct: 248 AVWCKE----GS-DIVITALPHQVSGAKLLEQIAAQMRAKKLPMVEDLRDESDHENPTRI 302 Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371 V+ P++ +D DLLM +F +D+E F +N+N++ + PQV L IL EW++ RRE Sbjct: 303 VIVPRSNRVDCDLLMNHLFASTDLEKSFRVNLNMIGLDNRPQVKGLVQILSEWISFRRET 362 Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431 + R +R+ + R+ IL+GLLIAYLNIDE+I IIR ED PK V+++RF LT+ Q DAI Sbjct: 363 VRSRLQYRLDKVLARLHILQGLLIAYLNIDEVIEIIRTEDDPKAVLMARFDLTDIQADAI 422 Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491 L+ +LR L KLEE +I+ E D L E++K++ LL S ++ N + EI+ + F Sbjct: 423 LDTKLRHLAKLEEMKIRGEQDELEKERKKLEELLGSERRLNNLLKKEIKADADKFGDD-- 480 Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551 RR+ E A KA ++ ++ E ITVV+S +GWIR K H VD +L++K GD+ Sbjct: 481 ---RRSPLVEREEA-KALTERDLMPSEAITVVLSEKGWIRHAKGHDVDCQSLNYKAGDNY 536 Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611 + + + L +DG++Y+L + L S RG GE I +++ I + + Sbjct: 537 LTHACGKSNQQAVFLGSDGRSYSLESHTLPSARGQGEPITGRLNVAEGTSIRQVVMGEED 596 Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVAVVGENR 668 LV S G F+ + ++++ R GK + + ++ +++ + D + + Sbjct: 597 QLWLVGSDAGYGFVCKGDDLLSKNRSGKALINLPENSEVMTPQVIADLDNDEILAITNQG 656 Query: 669 KLLIFSIDQIPEMSRGKGVRL 689 ++L+F I +P++S+GKG ++ Sbjct: 657 RMLLFPIKDLPQLSKGKGNKI 677 >gi|56415115|ref|YP_152190.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|56129372|gb|AAV78878.1| topoisomerase IV subunit A [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] Length = 752 Score = 521 bits (1342), Expect = e-145, Method: Compositional matrix adjust. Identities = 276/740 (37%), Positives = 448/740 (60%), Gaps = 29/740 (3%) Query: 23 RFALEE----RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78 R AL E YL Y++ I +RA+P + DG KPV RRI++AMSE+GL+ A FKKSAR Sbjct: 7 RLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSART 66 Query: 79 VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMT 137 VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S AA RYTE+R++ Sbjct: 67 VGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLS 126 Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197 + AEL+L + + D+ ++ EP + P++ PN+L NGT+GIAVGMAT IP HN++ Sbjct: 127 KYAELLLSELGQGTADWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLR 186 Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257 E+ +AA+ LI+ P+ ++++LL+ + GPD+PT I+ R I + Y GRG R+RA W Sbjct: 187 EVAKAAITLIEQPKTTLDQLLDIVQGPDYPTEAEIITPRAEIRKIYENGRGSVRMRAVWT 246 Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFP 315 E+ +V+T +P+QV ++++E+IA I K++P+++D+RDES + R+V+ P Sbjct: 247 KED-----GAVVITALPHQVSGAKVLEQIAAQIRNKKLPMVDDLRDESDHENPTRLVIVP 301 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 ++ +D + +M +F +D+E + +N+N++ + P V L IL EWLA RR+ + RR Sbjct: 302 RSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEWLAFRRDTVRRR 361 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435 ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF ++E Q +AIL L+ Sbjct: 362 LNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGISETQAEAILELK 421 Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495 LR L KLEE +I+ E D L E++++ +L S ++ + E++ + + R Sbjct: 422 LRHLAKLEEMKIRGEQDELEKERDQLQGILASERKMNTLLKKELQADSDAYGDD-----R 476 Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555 R+ E A KA + M+ EP+T+V+S GW+RS K H +D L++K GDS K A+ Sbjct: 477 RSPLREREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAV 535 Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615 + ++ + T G++Y + L S RG GE + + L + + KLL Sbjct: 536 KGKSNQPVVFIDTTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVEHMLMEGDDQKLL 595 Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--KLVVKVTGDHVAVVGENRKLLIF 673 + S G F+ ++++A R GKT + + + LV+K D + + + ++L+F Sbjct: 596 MASDAGYGFVCTFNDLVARNRAGKTLITLPENAHVMPPLVIKDEHDMLLAITQAGRMLMF 655 Query: 674 SIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDL 726 +D +P++S+GKG ++ + D G++ + LT I R +L Sbjct: 656 PVDSLPQLSKGKGNKIINIPSAEAAKGDDGLAHLYVLPPQSTLT-IHVGKRKIKLRPEEL 714 Query: 727 LGWLGKRGGVGSLVPKGFPR 746 +G+RG G+L+ +G R Sbjct: 715 QKVVGERGRRGTLM-RGLQR 733 >gi|238755472|ref|ZP_04616812.1| DNA topoisomerase 4 subunit A [Yersinia ruckeri ATCC 29473] gi|238706313|gb|EEP98690.1| DNA topoisomerase 4 subunit A [Yersinia ruckeri ATCC 29473] Length = 757 Score = 521 bits (1342), Expect = e-145, Method: Compositional matrix adjust. Identities = 282/749 (37%), Positives = 444/749 (59%), Gaps = 32/749 (4%) Query: 12 LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71 L + + + L E YL Y++ I +RA+P + DG KPV RRI++AMSE+GL A Sbjct: 4 LTHDGAERLPLHTFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLSNNAK 63 Query: 72 FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYR 130 FKKSAR VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S AA R Sbjct: 64 FKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMR 123 Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190 YTE+R+++ AE++L + + VD+ ++ EP + P++ PN+L NGT+GIAVGMAT Sbjct: 124 YTESRLSKYAEVLLGELGQGTVDWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATD 183 Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250 IP HNV+EI +A +ALID P+ S+E+LLE++ GPDFPT I+ R+ I + Y+ GRG Sbjct: 184 IPPHNVREIAQAVVALIDKPQTSLEELLEFVQGPDFPTDAEIITPRDEIRKIYQNGRGSV 243 Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-- 308 R+RA W E+ GS V+T +P+QV ++++E+IA + AK++P++ED+RDES + Sbjct: 244 RMRAVWKKED---GS--AVITALPHQVSGAKILEQIANQMRAKKLPMVEDLRDESDHENP 298 Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368 R+V+ P+ +D + +M +F +D+E + +NMN++ + P V L IL EWL R Sbjct: 299 TRLVIVPRTNRVDMEQVMNHLFATTDLERSYRINMNMIGLDHRPSVKGLMAILTEWLEFR 358 Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQV 428 R+ + +R ++R+ + +R+ IL+GLLIA+LNIDE+I IIR ED+PKP+++ F ++E Q Sbjct: 359 RDTVRKRLNYRLDKVLKRLHILEGLLIAFLNIDEVIHIIRTEDEPKPLLMQHFGISETQA 418 Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488 +AIL L+LR L KLEE +I+ E + L E++++ +LL S ++ I EI+ + Sbjct: 419 EAILELKLRHLAKLEEVKIRGEQEELAKERDQLQALLASERKLNTLIKKEIQADALAYGD 478 Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548 RR+ E A KA + ++ EP+T+V+S GW+RS K H +D S L +K G Sbjct: 479 E-----RRSPLTERGEA-KAMSEHDIVPSEPVTIVLSEMGWVRSAKGHDIDPSGLSYKAG 532 Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608 DS + A + ++ + + G++Y L L S RG GE + + I + Sbjct: 533 DSFRAAARGKSNQPVVFIDSTGRSYALDPLTLPSARGQGEPLTGKLTPPPGATIEQVLMA 592 Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--DHVAVVGE 666 KLL+ S G F+ S+++A R GK + + K +++ G D + + Sbjct: 593 PDDQKLLMASDAGYGFVCTFSDLVAKNRAGKAMISLPENAKALTPLEIHGPDDMLLSITA 652 Query: 667 NRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWI------DSAGRSYN 720 ++L+F + +PE+S+GKG ++ S I +GL W+ S + Sbjct: 653 AGRMLMFPVADLPELSKGKGNKIVS-----IPAAQAAAGEDGLAWLFVLPPQTSVTLYFG 707 Query: 721 RSE-----NDLLGWLGKRGGVGSLVPKGF 744 + + DL + +RG GS +P+G Sbjct: 708 KRKLILRPEDLQKFRAERGRKGSPLPRGL 736 >gi|262170624|ref|ZP_06038302.1| topoisomerase IV subunit A [Vibrio mimicus MB-451] gi|261891700|gb|EEY37686.1| topoisomerase IV subunit A [Vibrio mimicus MB-451] Length = 761 Score = 521 bits (1342), Expect = e-145, Method: Compositional matrix adjust. Identities = 271/681 (39%), Positives = 425/681 (62%), Gaps = 17/681 (2%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 + V+ + LR E+ YL Y++ I +RA+P + DG KPV RRII+AMSE+GL A +KK Sbjct: 8 DGVEQLPLRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSASAKYKK 67 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTE 133 SAR VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S AA RYTE Sbjct: 68 SARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 127 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 A++++ AE++L + + V+++ ++ EP + P++ P++L NG +GIAVGMAT IP Sbjct: 128 AKLSKFAEILLSELGQGTVEWQPNFDGTMQEPKMLPARLPHILLNGVTGIAVGMATDIPP 187 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HNV+E+ +A + LID+P + L++Y+ GPDFPT I+ + + YR GRG R+R Sbjct: 188 HNVREVADATIHLIDHPSAPLTDLMQYVKGPDFPTEAEIITPTVELEKIYRSGRGSVRMR 247 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRI 311 A WC E GS IV+T +P+QV ++L+E+IA + AK++P++ED+RDES + RI Sbjct: 248 AVWCKE----GS-DIVITALPHQVSGAKLLEQIAAQMRAKKLPMVEDLRDESDHENPTRI 302 Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371 V+ P++ +D DLLM +F +D+E F +N+N++ + PQV L IL EW++ RRE Sbjct: 303 VIVPRSNRVDCDLLMNHLFASTDLEKSFRVNLNMIGLDNRPQVKGLVQILSEWISFRRET 362 Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431 + R +R+ + R+ IL+GLLIAYLNIDE+I IIR ED PK V+++RF LT+ Q DAI Sbjct: 363 VRSRLQYRLDKVLARLHILQGLLIAYLNIDEVIEIIRTEDDPKAVLMARFDLTDIQADAI 422 Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491 L+ +LR L KLEE +I+ E D L E++K++ LL S ++ N + EI+ + F Sbjct: 423 LDTKLRHLAKLEEMKIRGEQDELEKERKKLEELLGSERRLNNLLKKEIKADADKFGDD-- 480 Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551 RR+ E A KA ++ ++ E ITVV+S +GWIR K H VD +L++K GD+ Sbjct: 481 ---RRSPLVEREEA-KALTERDLMPSEAITVVLSEKGWIRHAKGHDVDCQSLNYKAGDNY 536 Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611 + + + L +DG++Y+L + L S RG GE I +++ I + + Sbjct: 537 LTHACGKSNQQAVFLGSDGRSYSLESHTLPSARGQGEPITGRLNVAEGTSIRQVVMGEED 596 Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVAVVGENR 668 LV S G F+ + ++++ R GK + + ++ +++ + D + + Sbjct: 597 QLWLVGSDAGYGFVCKGDDLLSKNRSGKALINLPENSEVMTPQVIADLDNDEILAITNQG 656 Query: 669 KLLIFSIDQIPEMSRGKGVRL 689 ++L+F I +P++S+GKG ++ Sbjct: 657 RMLLFPIKDLPQLSKGKGNKI 677 >gi|119713346|gb|ABL97410.1| DNA topoisomerase IV subunit A [uncultured marine bacterium EB80_02D08] Length = 752 Score = 521 bits (1341), Expect = e-145, Method: Compositional matrix adjust. Identities = 273/743 (36%), Positives = 458/743 (61%), Gaps = 24/743 (3%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 +E + ++SL+ EE YL YA+ I +RA+P++ DG KPV RRI++AMSE+GLD G+ +K Sbjct: 4 QEQINSISLKQYAEESYLNYAMYVILDRALPNIGDGLKPVQRRILYAMSELGLDAGSKYK 63 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYT 132 KSAR VG+VIGK HPHGD + Y+++V +AQ F +YPL+ GQGN+G+ D S AA RYT Sbjct: 64 KSARTVGDVIGKFHPHGDGAAYEAMVLMAQNFSFKYPLVDGQGNWGSQDDPKSFAAMRYT 123 Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192 E+++T+ A L++ + VD++ ++ EPV+FPSK P++L NGTSGIAVGMAT IP Sbjct: 124 ESKLTKFANLLISELKSGTVDWQPNFDGSLLEPVIFPSKLPSILLNGTSGIAVGMATDIP 183 Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252 SHN+ E+ +A + L++NP+ + LL+ + GPDF I+ S E + E Y GRGGF+ Sbjct: 184 SHNINEVIDATVHLLENPKSELADLLKIVKGPDFSNHSPIIISTEELEEIYSTGRGGFKA 243 Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES--AEDVR 310 +A W ++ I++ +PYQ S+++E+IA+ ++ K+IP++ D+ DE E VR Sbjct: 244 QAFWQQDKN-----QIIINALPYQASGSKILEQIADQMVKKKIPMVVDLSDEGDHKEPVR 298 Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370 +V+ K+ ++ + +M +F +D++ + +NMN++S+ P+V L +LKEWL R+ Sbjct: 299 LVITLKSNRVNAEDVMNHLFASTDLQKNYRVNMNLISLKGGPKVFSLIDLLKEWLVFRKN 358 Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDA 430 + R+ R+ ++ R+ IL+GLLI YL++D++I IIR D+PK ++ F L++ Q +A Sbjct: 359 TVIRKLEHRLDQVNDRLHILEGLLIVYLDLDKVIKIIRESDEPKKDIIKAFKLSDIQANA 418 Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490 IL +RLR L KLE+ +++ E D LLAE+ I+ +L+S + I E+ E+KE+F + Sbjct: 419 ILEIRLRQLAKLEQIKLEQERDTLLAEQTDIEKILSSKTRLKTLIKNELLEIKEVFGE-- 476 Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDS 550 R++ E+S A + ++ ++ EP+TVV+S GWIRS K H +D S+L ++ D+ Sbjct: 477 ---ERKSPIKELSGAKVFSEEETLV-TEPVTVVLSAAGWIRSAKGHDIDPSSLSYRGEDT 532 Query: 551 LKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDS 610 L+ + + L ++GKAY+LP +L S RG G+ I + + ++ + + Sbjct: 533 LQDFRRGKSNQVSVFLDSNGKAYSLPTHSLPSARGMGDPISGRVSADSGVKFISTLIGND 592 Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH--VAVVGENR 668 K +++++ G +I E +I+N + GK F+K+ + ++ +KV DH +A + Sbjct: 593 DDKFMIMNTAGYGYISEFKNMISNKKSGKAFMKIPHDAELLKAIKVRNDHMYIAALSNIG 652 Query: 669 KLLIFSIDQIPEMSRGKGVRLQSY-------KDGGISDVICFKICEGLTWIDSAGRSYNR 721 +LLIF+ID++P + +GKG ++ + K+ ++ L I+S R Sbjct: 653 RLLIFNIDELPVLGKGKGNKIINIPTAKFIAKEELMTHAQLLSEASSLR-IESGKRFLTL 711 Query: 722 SENDLLGWLGKRGGVGSLVPKGF 744 DL ++ R G+++P+G+ Sbjct: 712 KLKDLENYISTRAKRGNMLPQGY 734 >gi|126666934|ref|ZP_01737910.1| DNA topoisomerase IV subunit A [Marinobacter sp. ELB17] gi|126628650|gb|EAZ99271.1| DNA topoisomerase IV subunit A [Marinobacter sp. ELB17] Length = 768 Score = 521 bits (1341), Expect = e-145, Method: Compositional matrix adjust. Identities = 282/753 (37%), Positives = 451/753 (59%), Gaps = 32/753 (4%) Query: 13 VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72 +E + V+LR E+ YL Y++ I +RA+P++ DG KPV RRII+AMSE+GL + + Sbjct: 7 TDEGFERVALRDYTEKAYLDYSMYVILDRALPNVGDGLKPVQRRIIYAMSELGLKSTSKY 66 Query: 73 KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRY 131 KKSAR VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G+ D S AA RY Sbjct: 67 KKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGSPDDPKSFAAMRY 126 Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191 TE+R+ + A+++L + + D+ ++ EP + P++ P++L NGT+GIAVGMAT I Sbjct: 127 TESRLARFADVLLSELGQGTADWVPNFDGTMDEPSILPARLPHVLLNGTTGIAVGMATDI 186 Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251 P HNV+E+ A + L+ P+ ++E+L EYI GPD+PT I+ R+ +++ Y GRG R Sbjct: 187 PPHNVREVTAACVHLLSAPDATVEQLCEYIQGPDYPTRAEIITPRKDLLQMYETGRGSLR 246 Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--V 309 +RARW V E G +V+T++P+QV +R++E+IA+ + AK++P++ D+RDES + Sbjct: 247 MRARW-VNEGGD----LVITDLPHQVSGNRVLEQIAQQMQAKKLPMVADLRDESDHENPT 301 Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369 R+V+ P++ +D + LM +F +D+E + +N+NV+ P V L +L EWL RR Sbjct: 302 RLVIVPRSNRVDAEGLMAHLFASTDLEKPYRVNINVIGNDGRPGVKGLVQLLTEWLTFRR 361 Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429 + RR +R+ + R+ +L+GLLIAYLN+DE+I IIR EDKPK ++ RFSL+ +Q + Sbjct: 362 ATVIRRLQYRLDKVLARLHLLEGLLIAYLNLDEVIEIIRYEDKPKAELMVRFSLSADQAE 421 Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489 AIL L+LR L KLEE +I+ E D L E++ + S+L S K+ I E+++ E + Sbjct: 422 AILELKLRHLAKLEEMKIRGEQDELAIERDHLQSILGSEKKLRQLIKTELQQDAETYGDD 481 Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549 RR+ E + +A ++ +P+TVV+S +GW+R+ K H +D L +K GD Sbjct: 482 -----RRSPIVERGES-RAFSNIDLVSNDPVTVVLSEKGWVRAAKGHDIDPLGLSYKAGD 535 Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609 + H +++ L + G+AY L A +L S RG GE + I+ + D Sbjct: 536 KFSLQAHGRNNQQVIFLDSTGRAYALMAHSLPSARGQGEPLSGHINPPPGAQFCGLLMGD 595 Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--KLVVKVTGD------HV 661 S K+++V+ G F ++++ R GKT + V + ++V V ++ Sbjct: 596 SQRKVVLVTDGGYGFATSLGDMLSKNRNGKTLVSVPKGAHLMAPVMVPVMAPESRETLYL 655 Query: 662 AVVGENRKLLIFSIDQIPEMSRGKG--------VRLQSYKDGGISDVICFKICEGLTWID 713 A V ++L+F + ++PE+ +GKG R+QS +D + V F + L I Sbjct: 656 AAVSNEGRMLVFPLTELPELVKGKGNKLISIPSARVQS-RDEFVVAVAVFAHSDQLE-IH 713 Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746 + R + +DL +LG+RG G +P+G R Sbjct: 714 AGKRKMSLQFSDLEHYLGERGRRGHKLPRGLQR 746 >gi|149377744|ref|ZP_01895478.1| DNA topoisomerase IV subunit A [Marinobacter algicola DG893] gi|149357970|gb|EDM46458.1| DNA topoisomerase IV subunit A [Marinobacter algicola DG893] Length = 774 Score = 521 bits (1341), Expect = e-145, Method: Compositional matrix adjust. Identities = 285/748 (38%), Positives = 442/748 (59%), Gaps = 26/748 (3%) Query: 13 VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72 +E + VSLR E+ YL Y++ I +RA+P++ DG KPV RRII+AMSE+GL + + Sbjct: 7 TDEGFERVSLRDYTEKAYLDYSMYVILDRALPNVGDGLKPVQRRIIYAMSELGLKSTSKY 66 Query: 73 KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRY 131 KKSAR VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S AA RY Sbjct: 67 KKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 126 Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191 TE+R+ + A+++L + + VD+ ++ EP V P++ P++L NGT+GIAVGMAT I Sbjct: 127 TESRLAKFADVLLSELGQGTVDWVPNFDGTMDEPSVLPARLPHVLLNGTTGIAVGMATDI 186 Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251 P HNV+E+ A + L+D PE + + L E++ GPDFPT I+ R+ I + Y GRG R Sbjct: 187 PPHNVREVAAACVRLLDQPEATTDDLCEHVQGPDFPTYAEIITPRKDIRQMYETGRGSLR 246 Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--V 309 +RARW E S IVVT++P+QV +R++E+IA+ + K++P++ D+RDES + Sbjct: 247 MRARWINE-----SGEIVVTDLPHQVSGNRVLEQIAQQMQTKKLPMVADLRDESDHENPT 301 Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369 R+V+ P++ +D + LM +F +D+E + +N+NV+ P V L +L EWL+ RR Sbjct: 302 RLVIVPRSNRVDQEGLMAHLFASTDLEKTYRVNINVIGNDGRPGVKGLREMLTEWLSFRR 361 Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429 + RR R+ + R+ IL+GLL+AYLNIDE+IAIIR EDKPK ++SRF L+ Q + Sbjct: 362 TTVTRRLQHRLDKVLARLHILEGLLVAYLNIDEVIAIIRYEDKPKAELMSRFGLSGEQAE 421 Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489 AIL L+LR L KLEE +I+ E D L AE++++ S+L S + I E+ E + Sbjct: 422 AILELKLRHLAKLEEMKIRGEQDELSAERDELQSILGSEDRLRELIKDELLADAETYGDD 481 Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549 RR+ E R KA + ++ +P+TVV+S +GW+R+ K H ++ L +K GD Sbjct: 482 -----RRSPIVE-RREAKAFSETELVSNDPVTVVLSEKGWVRAAKGHDIEPEGLSYKAGD 535 Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609 + +A + + L + G+AY+L A S RG GE + I+ + D Sbjct: 536 AFAMAAKGRNNQQAVFLDSTGRAYSLVAHTFPSARGQGEPLSGRINPPSGATFSGLLMGD 595 Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK-MKLVVKVTGD---HVAVVG 665 ++L+V+ G F+ ++I+ R GK + V K M VV D ++ + Sbjct: 596 PARRVLLVTDGGYGFVTSLDDMISKNRNGKAVVSVPKGAKIMSPVVVPNSDKPLYLGAIS 655 Query: 666 ENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISD-------VICFKICEGLTWIDSAGRS 718 ++L+F + ++PE+++GKG ++ S + + V F + L I + R Sbjct: 656 NEGRMLVFPLSELPELAKGKGNKIISIPSARVQNREEYVVAVAVFAEDDQLE-IRAGKRK 714 Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPR 746 +DL +LG+RG G +P+G R Sbjct: 715 MGLQFSDLEHYLGERGRRGHKLPRGLQR 742 >gi|258620849|ref|ZP_05715883.1| DNA topoisomerase 4 subunit A [Vibrio mimicus VM573] gi|258586237|gb|EEW10952.1| DNA topoisomerase 4 subunit A [Vibrio mimicus VM573] Length = 761 Score = 520 bits (1340), Expect = e-145, Method: Compositional matrix adjust. Identities = 272/681 (39%), Positives = 424/681 (62%), Gaps = 17/681 (2%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 + V+ + LR E+ YL Y++ I +RA+P + DG KPV RRII+AMSE+GL A +KK Sbjct: 8 DGVEQLPLRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSASAKYKK 67 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTE 133 SAR VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S AA RYTE Sbjct: 68 SARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 127 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 A++++ AE++L + + V+++ ++ EP + P++ P++L NG +GIAVGMAT IP Sbjct: 128 AKLSKFAEILLSELGQGTVEWQPNFDGTMQEPKMLPARLPHILLNGVTGIAVGMATDIPP 187 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HNV+E+ EA + LID+P + L++Y+ GPDFPT I+ + + YR GRG R+R Sbjct: 188 HNVREVAEATIHLIDHPSAPLTDLMQYVKGPDFPTEAEIITPTVELEKIYRSGRGSVRMR 247 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRI 311 A WC E GS IV+T +P+QV ++L+E+IA + AK++P++ED+RDES + RI Sbjct: 248 AVWCKE----GS-DIVITALPHQVSGAKLLEQIAAQMRAKKLPMVEDLRDESDHENPTRI 302 Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371 V+ P++ +D DLLM +F +D+E F +N+N++ + PQV L IL EW++ RRE Sbjct: 303 VIVPRSNRVDCDLLMNHLFASTDLEKSFRVNLNMIGLDNRPQVKGLVQILSEWISFRRET 362 Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431 + R +R+ + R+ IL+GLLIAYLNIDE+I IIR ED PK V+++RF LT Q DAI Sbjct: 363 VRSRLQYRLDKVLARLHILQGLLIAYLNIDEVIEIIRTEDDPKAVLMARFDLTGIQADAI 422 Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491 L+ +LR L KLEE +I+ E D L E++K++ LL S ++ N + EI+ + F Sbjct: 423 LDTKLRHLAKLEEMKIRGEQDELEKERKKLEELLGSERRLNNLLKKEIKADADKFGDD-- 480 Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551 RR+ E A KA ++ ++ E ITVV+S +GWIR K H VD +L++K GD+ Sbjct: 481 ---RRSPLVEREEA-KALTERDLMPSEAITVVLSEKGWIRHAKGHDVDCQSLNYKAGDNY 536 Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611 + + + L +DG++Y+L + L S RG GE I +++ I + + Sbjct: 537 LTHACGKSNQQAVFLGSDGRSYSLESHTLPSARGQGEPITGRLNVAEGTTIRQVVMGEED 596 Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVAVVGENR 668 LV S G F+ + ++++ R GK + + ++ +++ + D + + Sbjct: 597 QLWLVGSDAGYGFVCKGDDLLSKNRSGKALINLPENSEVMTPQVIADLDNDEILAITNQG 656 Query: 669 KLLIFSIDQIPEMSRGKGVRL 689 ++L+F I +P++S+GKG ++ Sbjct: 657 RMLLFPIKDLPQLSKGKGNKI 677 >gi|89092023|ref|ZP_01164978.1| DNA topoisomerase IV subunit A [Oceanospirillum sp. MED92] gi|89083758|gb|EAR62975.1| DNA topoisomerase IV subunit A [Oceanospirillum sp. MED92] Length = 759 Score = 520 bits (1340), Expect = e-145, Method: Compositional matrix adjust. Identities = 282/749 (37%), Positives = 458/749 (61%), Gaps = 23/749 (3%) Query: 10 NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69 T E+ + ++L+ E+ YL Y++ I +RA+P + DG KPV RRII+AMSE+GL Sbjct: 4 QTTFEDGTERLALKDFTEKAYLDYSMYVILDRALPHVGDGMKPVQRRIIYAMSELGLKAS 63 Query: 70 AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAA 128 A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G+ D S AA Sbjct: 64 AKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGSPDDPKSFAA 123 Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188 RYTE+R+ + AE++L + + VD+ ++ EP + P++ PN+L NGT+GIAVGMA Sbjct: 124 MRYTESRLARYAEVLLSEISQGTVDWVPNFDGTMREPAILPARLPNVLLNGTTGIAVGMA 183 Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248 T I HN++E+ +A + L+DNP ++++ E + GPD PT I+ SR + + Y GRG Sbjct: 184 TDILPHNLREVAKACVHLLDNPRADLDEITEIVPGPDMPTDAEIITSRRELKKVYETGRG 243 Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308 R+RA + E+ I++T +P+QV ++++E+IA + K++P++ D+RDES + Sbjct: 244 SVRMRAVYTKEQ-----GEIIITALPHQVSGAKILEQIAAQMQQKKLPMVSDLRDESDHE 298 Query: 309 --VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366 R+V+ P++ +D + LM +F +D+E + +NMN++ + PQV L IL EWL+ Sbjct: 299 NPTRLVIIPRSNRVDVEQLMAHLFASTDLERTYRVNMNMIGVDGKPQVKDLRQILVEWLS 358 Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426 R E++ +R + R+ + R+ IL+GL++AYLNIDE+IAIIR+E+ PK ++ RF LTE Sbjct: 359 WRTEIVRKRLNHRLAKVLDRLHILEGLMVAYLNIDEVIAIIRHEEDPKAELIKRFGLTEI 418 Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486 Q DAIL+L+LR L KLEE++I+SE + L E++K++ +L S + I EI++ E + Sbjct: 419 QADAILDLKLRHLAKLEEFKIQSEQNELEEERKKLEGILGSDAKMRKLIKKEIQDAAEEY 478 Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546 RR+ E A +A ++ ++ +P+TVVIS +GWIR+ K H +D L++K Sbjct: 479 GDD-----RRSPIVEREEA-QAFSEKDLLSSDPVTVVISKQGWIRAAKGHEIDAVGLNYK 532 Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606 GD+ K+A T +LL T G+++T+ NL S RG GE + I L I A Sbjct: 533 SGDAFKLACKGRTNQPTILLDTTGRSFTIETHNLPSARGQGEPVTGRITLPKGSTIDAAV 592 Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT---GDHVAV 663 K+L+ S G F+ + S++ + T+ GK L + + +KV D +A Sbjct: 593 AGKDADKILMASDAGYGFVAKISDLTSKTKNGKAALTLPKNANIISPIKVATPETDLLAA 652 Query: 664 VGENRKLLIFSIDQIPEMSRGKG---VRLQSYKDGGISDVIC--FKICEGLTWIDSAGRS 718 V +LL+F + ++PE++RGKG + + S + +++ + + T + AG+ Sbjct: 653 VTNEGRLLVFPVSELPELARGKGNKIINIPSARAAAREELVVALATLSKDDTLMVHAGKQ 712 Query: 719 YNR-SENDLLGWLGKRGGVGSLVPKGFPR 746 + R +D+ + G+RG G+ +P+G+ R Sbjct: 713 HLRLKPSDIEHYRGERGRRGNKLPRGYQR 741 >gi|148653991|ref|YP_001281084.1| DNA topoisomerase IV subunit A [Psychrobacter sp. PRwf-1] gi|148573075|gb|ABQ95134.1| DNA topoisomerase IV subunit A [Psychrobacter sp. PRwf-1] Length = 762 Score = 520 bits (1340), Expect = e-145, Method: Compositional matrix adjust. Identities = 279/737 (37%), Positives = 441/737 (59%), Gaps = 29/737 (3%) Query: 27 EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86 E+ YL YA+ I +RA+P + DG KPV RRII+AMSE+GL KKSAR VG+V+GK Sbjct: 26 EQAYLNYAMYVIMDRALPHIADGLKPVQRRIIYAMSELGLKSTTKPKKSARTVGDVLGKY 85 Query: 87 HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQVAELILQ 145 HPHGD + Y+++V +AQPF RYPLISGQGN+G+ D S AA RYTEA+M+ A +L Sbjct: 86 HPHGDTACYEAMVLMAQPFSYRYPLISGQGNWGSPDDPKSFAAMRYTEAKMSAYANTLLA 145 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 + + VD++D ++ EPV P++ PN+L NGT+GIAVGMAT IP HN+ E+ AA+ Sbjct: 146 ELGQGTVDWQDNFDGSMQEPVTLPARLPNILLNGTTGIAVGMATDIPPHNLNEVVRAAIR 205 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265 L+ NP++S+++L + I PD PT I+ S++ + Y GRG +++RA + V++ + Sbjct: 206 LLKNPDLSVKQLTQSIPAPDLPTAAEIITSKKDLQAMYETGRGSYKMRAVYHVDQQEKN- 264 Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFPKNRSLDPD 323 +++ +PYQV +++ E+IA+L++ K++P + DI DES + RIVL ++ +D Sbjct: 265 -LVIIDALPYQVSGNKVQEQIAKLMMDKKLPWVVDIHDESDHENACRIVLELRSTRVDVA 323 Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383 +M +F +D+E+ + +NMN++ + PQV L +L+EWL RR+V+ RR FR+ I Sbjct: 324 RVMSHLFASTDLESSYRVNMNMIGLNGKPQVKNLKEVLEEWLISRRQVVTRRVQFRLDKI 383 Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLE 443 D+R+ IL GLLIAYLNIDE+I IIR ED PK ++ ++ L++ Q +AIL++RLR L +LE Sbjct: 384 DKRLHILAGLLIAYLNIDEVIRIIREEDDPKQELMGKYDLSDIQANAILDIRLRQLARLE 443 Query: 444 EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVS 503 E +++SE D L AE+ + LL++ + Q+ E E+ + + G R + V Sbjct: 444 EIELRSEKDALEAERATLQELLDN-PESLTQLMIE-----ELEADMKEHGNDRMSSV-VE 496 Query: 504 RADKATLQQA-MIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDR 562 R + L+++ ++ EPIT V+S GWIR+ K H VD + ++ GDS + +H+ + ++ Sbjct: 497 REEATALKESDLVPSEPITAVLSKAGWIRAAKGHDVDAKGMSYRSGDSYQAHVHSKSNEK 556 Query: 563 ILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGN 622 I ++ + G++Y++ A L S RG G+ + ++ ++++ SS+G Sbjct: 557 IYIMDSTGRSYSIEAHTLASARGQGDPLTSVLKPPAGASFEQLLAGADDQRIILASSQGY 616 Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV--------------TGDHVAVVGENR 668 FI + N + GK + ++ K+ V + T + +AVV Sbjct: 617 GFINTLGNLETNQKAGKNVINFDADAKLLTVATIDKTDSETPDDAQALTQNQIAVVTSAG 676 Query: 669 KLLIFSIDQIPEMSRGKGVRLQSYKDG-GISDVICFKICEGLTWIDSAGRSYNRSENDLL 727 LLIF +D++PE RGKG +L + K G + VI + LT I + R DL Sbjct: 677 YLLIFGVDELPEQQRGKGNKLINLKAGEEVLAVIALNSHDSLT-ITAGKRHVTLKPMDLA 735 Query: 728 GWLGKRGGVGSLVPKGF 744 + KRG G +P+GF Sbjct: 736 NYTSKRGNRGGQLPRGF 752 >gi|146305636|ref|YP_001186101.1| DNA topoisomerase IV subunit A [Pseudomonas mendocina ymp] gi|145573837|gb|ABP83369.1| DNA topoisomerase IV subunit A [Pseudomonas mendocina ymp] Length = 749 Score = 520 bits (1340), Expect = e-145, Method: Compositional matrix adjust. Identities = 284/761 (37%), Positives = 455/761 (59%), Gaps = 29/761 (3%) Query: 6 ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65 +S S L E V+ SL E+ YL Y++ I +RA+P + DG KPV RRI++AMSE+G Sbjct: 1 MSESLDLSLEGVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIVYAMSELG 60 Query: 66 LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124 LD A KKSAR VG+V+GK HPHGD + Y+++V +AQPF RY L+ GQGN+G D Sbjct: 61 LDADAKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPDDPK 120 Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184 S AA RYTEAR+++ +E++L + + VD+ ++ +EP P++ PNLL NGT+GIA Sbjct: 121 SFAAMRYTEARLSRYSEVLLSELGQGTVDWVPNFDGTMNEPATLPARLPNLLLNGTTGIA 180 Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244 VGMAT +P HN++E+ A + L+D P ++E+L E+I GPDFPT ++ + +++ Y Sbjct: 181 VGMATDVPPHNLREVAAACVRLLDEPGATVEQLCEHIQGPDFPTEAEVITPKADLLKIYE 240 Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304 GRG R+RA + VE+ I+VT +P+QV ++++E+IA + AK++P++ D+RDE Sbjct: 241 SGRGSVRMRAVYRVED-----GDIIVTALPHQVSGAKVLEQIAAQMQAKKLPMVADLRDE 295 Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362 S + RIV+ P++ +D D LM +F +D+E+ + +N NV+ + PQV L +L Sbjct: 296 SDHENPTRIVIIPRSNRVDADELMTHLFATTDLESSYRVNTNVIGLDGKPQVKDLRTLLS 355 Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422 EWL +R + RR FR+ +++R+ +L+GLLIA+LN+DE+I IIR ED+PKPV++ F Sbjct: 356 EWLVYRVGTVRRRLQFRLDKVEKRLHLLEGLLIAFLNLDEVIRIIRTEDQPKPVLMEAFG 415 Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482 LTE Q D IL+ RLR L +LEE +I+ E D L E+EK+ +LL S + + EI E Sbjct: 416 LTEVQADYILDTRLRQLARLEEMKIRGEQDELAKEREKLLALLGSEAKLKKLVRKEIIED 475 Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQA-MIEKEPITVVISNRGWIRSLKSHSVDLS 541 E + RR+ V+RA+ L + ++ EP+TVV+S +GW+R K H +D + Sbjct: 476 AEKYGDD-----RRSPI--VARAEARALSETELMPTEPVTVVLSEKGWVRCAKGHDIDAT 528 Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD 601 L +K GD K A + + + + G++Y+L A +L S RG GE + + Sbjct: 529 GLSYKAGDGFKAAAPGRSNQYAVFIDSTGRSYSLAAHSLPSARGQGEPLTGRLTPPPGAT 588 Query: 602 IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTG 658 + + + ++ S G F+V+ ++ A + GK L + + K+ K V + Sbjct: 589 FECVMLPEDSALYVIASDAGYGFVVKGEDLQAKNKAGKALLSLPNGAKVVAPKPVTNLED 648 Query: 659 DHVAVVGENRKLLIFSIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTW 711 D +A V +LL+F + +P++ +GKG ++ + ++ ++D+ + G + Sbjct: 649 DWLAAVTTEGRLLLFKVTDLPQLGKGKGNKIIGIPGERVASREEYLTDLAV--LPSGASL 706 Query: 712 IDSAG-RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751 + AG R+ +DL + G+RG G+ +P+GF R + L Sbjct: 707 VLQAGKRTLTLKADDLEHYKGERGRRGNKLPRGFQRVDQLL 747 >gi|238750917|ref|ZP_04612414.1| DNA topoisomerase 4 subunit A [Yersinia rohdei ATCC 43380] gi|238710831|gb|EEQ03052.1| DNA topoisomerase 4 subunit A [Yersinia rohdei ATCC 43380] Length = 757 Score = 520 bits (1340), Expect = e-145, Method: Compositional matrix adjust. Identities = 281/746 (37%), Positives = 444/746 (59%), Gaps = 22/746 (2%) Query: 12 LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71 L + + + L E YL Y++ I +RA+P + DG KPV RRI++AMSE+GL+ A Sbjct: 4 LTHDGAERLPLHTFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNNSAK 63 Query: 72 FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYR 130 FKKSAR VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S AA R Sbjct: 64 FKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMR 123 Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190 YTE+R+++ A+++L + + VD+ ++ EP P++ PN+L NGT+GIAVGMAT Sbjct: 124 YTESRLSKYADVLLGELGQGTVDWTPNFDGTMQEPKTLPARLPNILLNGTTGIAVGMATD 183 Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250 IP HNV+EI +A +ALID P S+++LLE++ GPDFPT I+ R+ I + Y+ GRG Sbjct: 184 IPPHNVREIAQAVIALIDKPATSLDELLEFVQGPDFPTEAEIITPRDDIRKIYQNGRGSV 243 Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-- 308 R+RA W E+ GS V+T +P+QV ++++E+IA + AK++P++ED+RDES + Sbjct: 244 RMRALWKKED---GS--AVITALPHQVSGAKVLEQIASQMRAKKLPMVEDLRDESDHENP 298 Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368 R+V+ P+ +D D +M +F +D+E + +NMN++ + P V L IL EWL R Sbjct: 299 TRLVIVPRTNRVDLDQVMNHLFATTDLERSYRINMNMIGLDHRPSVKGLLEILTEWLVFR 358 Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQV 428 R+ + R ++R++ + +R+ IL+GLLIA+LNIDE+I IIR ED+PKP+++ F+++E Q Sbjct: 359 RQTVRNRLNYRLEKVLKRLHILEGLLIAFLNIDEVIHIIRTEDEPKPLLMQHFAISETQA 418 Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488 +AIL L+LR L KLEE +I+ E D L E++++ +LL S ++ + EI+ + Sbjct: 419 EAILELKLRHLAKLEEVKIRGEQDELAKERDQLQALLASERKLNTLLKKEIQADAAAYGD 478 Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548 RR+ E + A KA ++ EP+T+V+S GW+RS K H +D + L++K G Sbjct: 479 D-----RRSPLKERAEA-KAMSDHDIVPSEPVTIVLSEMGWVRSAKGHDIDPTGLNYKAG 532 Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608 DS + A + ++ + + G++Y L L S RG GE + + I + Sbjct: 533 DSFRAAARGMSNQPVVFIDSTGRSYALDPLTLPSARGQGEPLTGKLTPPPGATIEQVLMA 592 Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--DHVAVVGE 666 KLL+ S G F+ +++IA R GKT + + K +++ G D + + Sbjct: 593 PEHQKLLMASDAGYGFVCTFNDLIAKNRAGKTMITLPENAKALPPLEIYGPDDMLLSITA 652 Query: 667 NRKLLIFSIDQIPEMSRGKGVRLQSYK----DGGISDVICFKICEGLTWI--DSAGRSYN 720 ++L+F + +PE+S+GKG ++ S G ++ + T I R Sbjct: 653 AGRMLMFPVADLPELSKGKGNKIVSIPAPDAAAGKDRLVWLFVLPPQTSITLHFGKRKLT 712 Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPR 746 DL + +RG GS +P+G R Sbjct: 713 LRPEDLQKFRAERGRKGSPLPRGLQR 738 >gi|152980564|ref|YP_001352396.1| DNA topoisomerase IV subunit A [Janthinobacterium sp. Marseille] gi|151280641|gb|ABR89051.1| topoisomerase IV subunit A [Janthinobacterium sp. Marseille] Length = 771 Score = 520 bits (1340), Expect = e-145, Method: Compositional matrix adjust. Identities = 281/695 (40%), Positives = 418/695 (60%), Gaps = 32/695 (4%) Query: 18 KAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSAR 77 +A++L E YL YA+S +K RA+PD+ DG KPV RRI+ AM+E+GL+ A +KSA Sbjct: 18 EALTLTTFAERAYLDYAISVVKGRALPDVCDGQKPVQRRILFAMNELGLNSAAKPRKSAA 77 Query: 78 IVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMT 137 +VG+V+GKLHPHGDQSVYD+LVR+AQ F RYPLI GQGNFG+ DGD AAA RYTEAR+T Sbjct: 78 VVGDVLGKLHPHGDQSVYDALVRMAQDFSLRYPLIDGQGNFGSRDGDGAAAMRYTEARLT 137 Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197 +++L+L +D VDF+ Y+ EP + PS+ P +L NG SGIAVGMAT IPSHN+ Sbjct: 138 PISKLLLDEIDMGTVDFQPNYDGSTEEPKLLPSRLPFVLLNGASGIAVGMATEIPSHNLH 197 Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257 E+ +AA+ALI NP+++ E+L+ + GPDFP GG I+ S +I + Y GRG +VRA W Sbjct: 198 EVAKAAVALIRNPKLTHEELMAIVPGPDFPGGGQIITSPTAISDIYSSGRGSVKVRATWK 257 Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELI-----IAKR-------------IPLLE 299 +E++ RG W VVTE+P+ +++E+I EL + K+ + +L+ Sbjct: 258 IEDMARGQWQAVVTELPHGTSSQKVLEEIEELTNPKIKLGKKSLSPEQLALKQTVLSMLD 317 Query: 300 DIRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPL 357 +RDES D VR+V PK+++ D + + +ET +N+ ++ P+ L Sbjct: 318 TVRDESGRDAPVRLVFEPKSKNQDQTEFTNLLLAHTSLETSVSINLVMIGGDGRPRQKSL 377 Query: 358 DGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM 417 IL+EW+ R + RRS F++Q +D R+ IL+G LNID++I IIR D+PKP + Sbjct: 378 GDILREWIEFRFTTITRRSQFKLQKVDDRIHILEGREAILLNIDKVIKIIRESDEPKPAL 437 Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477 + F L+E Q D IL +RLR L +LE +I+ EL L EK + LL+ N + Sbjct: 438 MDAFRLSERQADDILEIRLRQLARLETIKIQQELAELRNEKTTLQDLLD------NPSSM 491 Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHS 537 + +KEI + G R T EV A+KA+++ +I+ EP+TVVIS +GW+R+ H Sbjct: 492 KRLVIKEIEADEKQFGDARRTLIEV--AEKASVETKVID-EPVTVVISQKGWVRARTGHG 548 Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLN 597 D + FK GD+L T D +L+ ++G+ Y++P L RG G I L++L Sbjct: 549 HDAAQFTFKAGDTLYNTFECRTVDSLLVFGSNGRIYSVPVSALPGARGDGVPITTLVELA 608 Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657 I+ F + LL+ S+ G F + ++++ TR GK+F+ + ++ VT Sbjct: 609 SGSRILHYFAGPADVTLLLASTAGYGFTAKSGDMVSRTRGGKSFITLDDGDEPLAPCPVT 668 Query: 658 --GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRL 689 +A + E +LL+F ID+I ++ G+GV L Sbjct: 669 AGASAIACLSEKGRLLVFGIDEIKSLTAGGRGVIL 703 >gi|310766340|gb|ADP11290.1| DNA topoisomerase IV subunit A [Erwinia sp. Ejp617] Length = 758 Score = 520 bits (1340), Expect = e-145, Method: Compositional matrix adjust. Identities = 277/746 (37%), Positives = 448/746 (60%), Gaps = 22/746 (2%) Query: 12 LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71 L ++ + ++L E YL Y++ I +RA+P + DG KPV RRI++AMSE+GL A Sbjct: 4 LTQDGAERLALHKFTENAYLNYSMYVIMDRALPYIGDGLKPVQRRIVYAMSELGLSNNAK 63 Query: 72 FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYR 130 FKKSAR VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S AA R Sbjct: 64 FKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMR 123 Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190 YTE+R+++ AE++L + + VD+ ++ EP + P++ PN+L NGT+GIAVGMAT Sbjct: 124 YTESRLSKYAEVLLGELGQGTVDYVPNFDGTLQEPSMLPARLPNILLNGTTGIAVGMATD 183 Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250 IP HN++E+ +AA+ LID+P+ ++++LL+ + GPD+PT I+ R I + Y+ GRG Sbjct: 184 IPPHNLREVAKAAITLIDSPKTTLDELLDIVQGPDYPTEAEIITPRNEIRKIYQNGRGSV 243 Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-- 308 R+RA W EE +V+T +P+QV +R++E+IA + K++P++ED+RDES + Sbjct: 244 RMRAVWKKEE-----GDVVITALPHQVSGARVLEQIAVQMRNKKLPMVEDLRDESNHENP 298 Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368 R+V+ P++ +D D +M +F +D+E + +N+N++ + P V L IL EWL R Sbjct: 299 TRLVIVPRSNRVDMDQVMNHLFATTDLERSYRINLNMIGLNNRPAVKNLLEILSEWLIFR 358 Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQV 428 R+ + RR + R++ + +R+ IL GLL+A+LNIDE+I IIR ED+PKPV++SRF ++E Q Sbjct: 359 RDTVRRRLNHRLEKVLKRLHILAGLLVAFLNIDEVIEIIRAEDEPKPVLMSRFDISEIQA 418 Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488 +AIL L+LR L KLEE +I+ E D L E+ ++++L S ++ + E++ + + Sbjct: 419 EAILELKLRHLAKLEEMKIRGEQDELEKERAHLEAILASERKMNTLLKKELQADSDAYGD 478 Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548 RR+ E A KA + +I EP+T+V+S GW+RS K H +D + L +K G Sbjct: 479 D-----RRSPLREREEA-KAIGEHELIPSEPVTIVLSQSGWVRSAKGHDIDPAGLSYKAG 532 Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608 D+ A + ++ + + G++Y L L S RG GE + + + + Sbjct: 533 DAYLGAARGKSNQPVVFIDSTGRSYALDPLTLPSARGQGEPLTGKLTPPPGAVVEQVLMA 592 Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--KLVVKVTGDHVAVVGE 666 D T KLL+ S G F+ SE+++ R GK L + S K+ L ++ D + + Sbjct: 593 DETQKLLMASDAGYGFVCTFSELVSRNRAGKALLTLPSNAKVMTPLAIQSNDDLLLAITA 652 Query: 667 NRKLLIFSIDQIPEMSRGKG---VRLQSYKDGGISDVICFKIC---EGLTWIDSAGRSYN 720 ++L+F + ++P++S+GKG V + S + D + + + E + R Sbjct: 653 AGRMLMFPVSELPQLSKGKGNKIVSIPSAEAASGEDKLAWLLLLTPENAITLYVGKRKLT 712 Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPR 746 DL + +RG G+L+P+G R Sbjct: 713 LKAADLQKFRAERGRRGTLLPRGLQR 738 >gi|259907126|ref|YP_002647482.1| DNA topoisomerase IV subunit A [Erwinia pyrifoliae Ep1/96] gi|224962748|emb|CAX54203.1| DNA topoisomerase 4 subunit A [Erwinia pyrifoliae Ep1/96] gi|283476932|emb|CAY72810.1| topoisomerase IV subunit A [Erwinia pyrifoliae DSM 12163] Length = 758 Score = 520 bits (1339), Expect = e-145, Method: Compositional matrix adjust. Identities = 277/746 (37%), Positives = 448/746 (60%), Gaps = 22/746 (2%) Query: 12 LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71 L ++ + ++L E YL Y++ I +RA+P + DG KPV RRI++AMSE+GL A Sbjct: 4 LTQDGAERLALHKFTENAYLNYSMYVIMDRALPYIGDGLKPVQRRIVYAMSELGLSNNAK 63 Query: 72 FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYR 130 FKKSAR VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S AA R Sbjct: 64 FKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMR 123 Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190 YTE+R+++ AE++L + + VD+ ++ EP + P++ PN+L NGT+GIAVGMAT Sbjct: 124 YTESRLSKYAEVLLGELGQGTVDYVPNFDGTLQEPSMLPARLPNILLNGTTGIAVGMATD 183 Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250 IP HN++E+ +AA+ LID+P+ ++++LL+ + GPD+PT I+ R I + Y+ GRG Sbjct: 184 IPPHNLREVAKAAITLIDSPKTTLDELLDIVQGPDYPTEAEIITPRNEIRKIYQNGRGSV 243 Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-- 308 R+RA W EE +V+T +P+QV +R++E+IA + K++P++ED+RDES + Sbjct: 244 RMRAVWKKEE-----GDVVITALPHQVSGARVLEQIAVQMRNKKLPMVEDLRDESNHENP 298 Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368 R+V+ P++ +D D +M +F +D+E + +N+N++ + P V L IL EWL R Sbjct: 299 TRLVIVPRSNRVDMDQVMNHLFATTDLERSYRINLNMIGLNNRPAVKNLLEILSEWLIFR 358 Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQV 428 R+ + RR + R++ + +R+ IL GLL+A+LNIDE+I IIR ED+PKPV++SRF ++E Q Sbjct: 359 RDTVRRRLNHRLEKVLKRLHILAGLLVAFLNIDEVIEIIRAEDEPKPVLMSRFDISEIQA 418 Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488 +AIL L+LR L KLEE +I+ E D L E+ ++++L S ++ + E++ + + Sbjct: 419 EAILELKLRHLAKLEEMKIRGEQDELEKERAHLEAILASERKMNTLLKKELQADSDAYGD 478 Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548 RR+ E A KA + +I EP+T+V+S GW+RS K H +D + L +K G Sbjct: 479 D-----RRSPLREREEA-KAIGEHELIPSEPVTIVLSQSGWVRSAKGHDIDPAGLSYKAG 532 Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608 D+ A + ++ + + G++Y L L S RG GE + + + + Sbjct: 533 DAYLGAARGKSNQPVVFIDSTGRSYALDPLTLPSARGQGEPLTGKLTPPPGAVVEQVLMA 592 Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--KLVVKVTGDHVAVVGE 666 D T KLL+ S G F+ SE+++ R GK L + S K+ L ++ D + + Sbjct: 593 DETQKLLMASDAGYGFVCTFSELVSRNRAGKALLTLPSNAKVMTPLAIQSNDDLLLAITA 652 Query: 667 NRKLLIFSIDQIPEMSRGKG---VRLQSYKDGGISDVICFKIC---EGLTWIDSAGRSYN 720 ++L+F + ++P++S+GKG V + S + D + + + E + R Sbjct: 653 AGRMLMFPVSELPQLSKGKGNKIVSIPSAEAASGEDKLAWLLLLTPENAITLYVGKRKLT 712 Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPR 746 DL + +RG G+L+P+G R Sbjct: 713 LKAADLQKFRAERGRRGTLLPRGLQR 738 >gi|170719131|ref|YP_001784279.1| DNA topoisomerase IV subunit A [Haemophilus somnus 2336] gi|168827260|gb|ACA32631.1| DNA topoisomerase IV, A subunit [Haemophilus somnus 2336] Length = 747 Score = 520 bits (1339), Expect = e-145, Method: Compositional matrix adjust. Identities = 280/747 (37%), Positives = 448/747 (59%), Gaps = 24/747 (3%) Query: 10 NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69 NT+ E ++ + LR E+ YL Y++ I +RA+P + DG KPV RRII+AMSE+GL+ Sbjct: 2 NTINYEGIEQMPLRQFTEKAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAMSELGLNAS 61 Query: 70 AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAA 128 A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S AA Sbjct: 62 AKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAA 121 Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188 RYTE+R+++++E++L + + V+++ ++ EP P++ P++L NGT+GIAVGMA Sbjct: 122 MRYTESRLSKISEILLSELGQGTVNYQANFDGTLEEPQYLPARLPHILLNGTTGIAVGMA 181 Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248 T IP HN+ E+ +A + L+DNP +++L+ + GPDFPT I+ +E I + Y GRG Sbjct: 182 TDIPPHNLNEVADATIMLLDNPNADLDQLMTALQGPDFPTEAEIISPKEEIRKIYEQGRG 241 Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308 ++RA W E + I++T +P+Q S+++ +IAE + K++P++EDIRDE+ + Sbjct: 242 SIKMRAVWKKE-----NGEIIITALPHQSSPSKIVAQIAEQMQNKKLPMVEDIRDEADHE 296 Query: 309 --VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366 +R+V+ P++ +D D LM +F +D+E + +NMN++ + P V L IL EWL Sbjct: 297 NPIRLVIVPRSNRVDTDALMAHLFATTDLEKSYRVNMNMIGLDNKPAVKNLVQILTEWLT 356 Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426 RR+ + RR +R+ + R+ IL GLLIA+LNIDEII IIRNEDKPK ++++RF+LT+ Sbjct: 357 FRRQTVTRRLQYRLDKVLARLHILDGLLIAFLNIDEIIEIIRNEDKPKEILIARFNLTDE 416 Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486 Q +AILNLRLR L KLEE ++++E +NL E+ ++ +LNS + N I EI++ + F Sbjct: 417 QAEAILNLRLRHLAKLEEQELQAEKNNLAKERNSLEQILNSEIRLNNLIKKEIQQDAKTF 476 Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546 + R + E + A KA + M EPIT+++S GW+R K H ++ AL +K Sbjct: 477 ASP-----RLSPLVERAEA-KAISETDMTPSEPITIILSEMGWVRCAKGHDINARALSYK 530 Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606 GD+ + ++ + + G++YTL +L S R GE + + L I Sbjct: 531 TGDNYLTHACGKSNQPVVFIDSTGRSYTLDPLSLPSARSQGEPLTGKLTLPSGATIEHLL 590 Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--KLVVK-VTGDHVAV 663 + + LL+ S G FI + ++++ + GK + + + LV++ T VA+ Sbjct: 591 IENENQSLLMASDAGYGFICKFEDLVSRNKAGKAVISLPENANVLPPLVLQNSTALLVAL 650 Query: 664 VGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISD-----VICFKICEGLTWIDSAG-R 717 NR +L+F + +PE+S+GKG ++ + V F I E + + AG R Sbjct: 651 TSMNR-MLVFPVADLPELSKGKGNKIIHIPAANAKERSELLVKLFLISEKTSLVFHAGKR 709 Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGF 744 D+ + +RG GS +P+G Sbjct: 710 KVTLKPEDIRKFRAERGRKGSPLPRGL 736 >gi|237748748|ref|ZP_04579228.1| topoisomerase IV subunit A [Oxalobacter formigenes OXCC13] gi|229380110|gb|EEO30201.1| topoisomerase IV subunit A [Oxalobacter formigenes OXCC13] Length = 772 Score = 520 bits (1339), Expect = e-145, Method: Compositional matrix adjust. Identities = 296/766 (38%), Positives = 442/766 (57%), Gaps = 52/766 (6%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 +E+ +++ L E YL YA+S +K RA+PD+ DG KPV RRI++AM+E+ LD A + Sbjct: 15 DEHKESLMLASFAERAYLDYAISVVKGRALPDVCDGQKPVQRRILYAMNELRLDSEAKPR 74 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSA +VG+V+GKLHPHGDQSVYD+LVR+AQ F RYPLI G GNFG+ DGD AAA RYTE Sbjct: 75 KSAAVVGDVLGKLHPHGDQSVYDALVRMAQDFSMRYPLIDGHGNFGSRDGDGAAAMRYTE 134 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 AR+T +AEL+L+ +D+ V+F+D Y+ EP + P++ P L NG SGIAVGMAT IPS Sbjct: 135 ARLTPIAELLLEEIDQGTVEFQDNYDGSTQEPKLLPARLPVTLLNGASGIAVGMATEIPS 194 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E+ AA+A+I NP IS +L+E I GPDFP GG I+ + +I E Y GRG +VR Sbjct: 195 HNLNEVATAAVAMIRNPSISHAELMEIIPGPDFPGGGQIITAPNTISEIYENGRGSVKVR 254 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAEL-----------IIAKRIPL----- 297 ARW +EE+ RG W VV+E+P +++E+I E+ + A+++ L Sbjct: 255 ARWKIEELARGQWQAVVSELPPGTSAQKVLEEIEEITNPKVRAGKKALSAEQVALRQQFL 314 Query: 298 --LEDIRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQ 353 L+ IRDE++ D VRIVL PK++ +PD M+ + + +E P+N+ ++ + P+ Sbjct: 315 GILDTIRDEASRDAPVRIVLEPKSKRQNPDEFMQMLLAHTSLECNAPVNLVMIGIDGRPR 374 Query: 354 VMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP 413 L I+ EW+ R + RR+++R++ +D R+ IL+G LNID +I IIR D+P Sbjct: 375 QKGLTDIISEWIDFRFATVTRRTNWRLKRVDDRIHILEGRETVLLNIDAVIHIIRESDEP 434 Query: 414 KPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWN 473 K ++ F L+E Q D IL +RLR L +LE+ +I+ EL L EK+ + LL++ Sbjct: 435 KAALIDAFQLSERQADDILEIRLRQLARLEKIRIEQELAELRKEKKGLHDLLDNPSSMKR 494 Query: 474 QIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL 533 I ++EI + G R T E A++AT +Q +++ EP+TV+IS GW+R Sbjct: 495 LI------IREIEADRKKYGDARRTLIE--EAERATAEQKIVD-EPVTVIISQNGWVRQR 545 Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593 H ++LSA+ FK GD+L + +TD +L S+ G+ YT+P L GRG G I Sbjct: 546 TGHGLNLSAITFKSGDNLFSSFECRSTDFLLAFSSTGRIYTIPVHQLPGGRGDGMPITTF 605 Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--K 651 ++ ++ IV V +L+ G F + S++++ R GK+F+ + E + Sbjct: 606 AEIGIDETIVQYLVSSPDKSVLLSMDSGYGFAAKTSDMMSRVRNGKSFISLEDGETLLPP 665 Query: 652 LVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDG-------GISDVICF 703 LV+ + V+ E + L+F ++ +S G GV L G + D C Sbjct: 666 LVIPEASKSIGVLSEKGRFLLFDATELRVLSSGGHGVILMGLDKGEKIRATLPVDDNGCL 725 Query: 704 KICEGLTWIDSAGRSYNRSE-----NDLLGWLGKRGGVGSLVPKGF 744 IC ++ NR E N + + GKR G V F Sbjct: 726 VIC--------MAKNDNRYEVRISGNQIETYTGKRARKGKPVETRF 763 >gi|238796975|ref|ZP_04640479.1| DNA topoisomerase 4 subunit A [Yersinia mollaretii ATCC 43969] gi|238719235|gb|EEQ11047.1| DNA topoisomerase 4 subunit A [Yersinia mollaretii ATCC 43969] Length = 757 Score = 520 bits (1339), Expect = e-145, Method: Compositional matrix adjust. Identities = 283/751 (37%), Positives = 439/751 (58%), Gaps = 32/751 (4%) Query: 12 LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71 L + + + L E YL Y++ I +RA+P + DG KPV RRI++AMSE+GL A Sbjct: 4 LTHDGAERLPLHTFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLSNSAK 63 Query: 72 FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYR 130 FKKSAR VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S AA R Sbjct: 64 FKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMR 123 Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190 YTE+R+++ AE++L + + VD+ ++ EP + P++ PN+L NGT+GIAVGMAT Sbjct: 124 YTESRLSKYAEVLLGELGQGTVDWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATD 183 Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250 IP HNV+EI +A +ALID P S+E+LLE++ GPDFPT I+ R I + Y GRG Sbjct: 184 IPPHNVREIAQAVIALIDKPTTSLEELLEFVQGPDFPTEAEIITPRNEIRKIYENGRGSV 243 Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-- 308 R+RA W E+ GS V+T +P+QV ++++E+IA + AK++P++ED+RDES + Sbjct: 244 RMRALWKKED---GS--AVITALPHQVSGAKVLEQIASQMRAKKLPMVEDLRDESDHENP 298 Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368 R+V+ P+ +D D +M +F +D+E + +NMN++ + P V L IL EWL R Sbjct: 299 TRLVIVPRTNRVDLDQVMNHLFATTDLERSYRINMNMIGLDHRPTVKGLLEILTEWLVFR 358 Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQV 428 R+ + R ++R++ + +R+ IL+GLLIA+LNIDE+I IIR ED+PKP+++ F+++E Q Sbjct: 359 RQTVRNRLNYRLEKVLKRLHILEGLLIAFLNIDEVIHIIRTEDEPKPLLMQHFAISETQA 418 Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488 +AIL L+LR L KLEE +I+ E D L E++++ +LL S ++ I EI+ + Sbjct: 419 EAILELKLRHLAKLEEVKIRGEQDELAKERDQLQALLASERKLNTMIKKEIQADAAAYGD 478 Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548 RR+ E + A KA ++ EP+T+V+S GW+RS K H +D L +K G Sbjct: 479 D-----RRSPLTERAEA-KAMSDHDIVPSEPVTIVLSEMGWVRSAKGHDIDPGGLSYKAG 532 Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608 DS + A + ++ + + G++Y L L S RG GE + + I + Sbjct: 533 DSFRAAARGMSNQPVVFIDSTGRSYALDPLTLPSARGQGEPLTGKLTPPPGATIEQVLMA 592 Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--DHVAVVGE 666 KLL+ S G F+ ++++A R GKT + + K +++ G D + + Sbjct: 593 PDDQKLLMASDAGYGFVCTFNDLVAKNRAGKTMITLPENAKALPPLEIHGPDDMLLSITA 652 Query: 667 NRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTW-----------IDSA 715 ++L+F + +PE+S+GKG ++ S I + L W + Sbjct: 653 AGRMLMFPVADLPELSKGKGNKIVS-----IPGAQAAAGEDRLAWLFVLPPQTSVTLHFG 707 Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746 R DL + +RG GS +P+G R Sbjct: 708 KRKLTLRPEDLQKFRAERGRKGSPLPRGLQR 738 >gi|307544311|ref|YP_003896790.1| DNA topoisomerase IV subunit A [Halomonas elongata DSM 2581] gi|307216335|emb|CBV41605.1| DNA topoisomerase IV subunit A [Halomonas elongata DSM 2581] Length = 752 Score = 520 bits (1338), Expect = e-145, Method: Compositional matrix adjust. Identities = 284/746 (38%), Positives = 436/746 (58%), Gaps = 25/746 (3%) Query: 12 LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71 + E +V+ +SLR E+ YL Y++ I +RA+P + DG KPV RRI++AM E+ L A Sbjct: 7 VAEGDVERLSLREYTEKAYLDYSMYVILDRALPHIGDGMKPVQRRIVYAMRELALSANAK 66 Query: 72 FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYR 130 +KKSAR VG+V+GK HPHGD + Y+++V +AQ F RYPL+ GQGN+G+ D S AA R Sbjct: 67 YKKSARTVGDVLGKFHPHGDSACYEAMVLMAQSFSYRYPLVDGQGNWGSPDDPKSFAAMR 126 Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190 YTEAR+++ AE++L + + VD+ ++ +EPVV P++ P++L NG +GIAVGMAT Sbjct: 127 YTEARLSKFAEVLLSELGQGTVDWAPNFDGTMNEPVVLPARLPHVLLNGGTGIAVGMATD 186 Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250 IP HNV E+ EA L+ PE + +L+ ++ GPDFP+ I+ + + Y GRG Sbjct: 187 IPPHNVGEVVEATCHLLRQPEATTAELMAHLPGPDFPSAAEIITPASDLRKIYENGRGSV 246 Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA--ED 308 +VRAR+ EE +V+T +PYQV ++++E+IA + AK++P++ D+RDES E Sbjct: 247 KVRARFVREE-----GNVVITALPYQVSGAKVLEQIAAQMQAKKLPMVADLRDESTHEEP 301 Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368 R+V+ P++ +D + LM +F +D+E +NMNV+ + P+V+ L G+L EWL R Sbjct: 302 TRLVIEPRSNRVDVESLMAHLFATTDLEKNIRVNMNVIGLDGRPRVLSLAGLLSEWLDFR 361 Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQV 428 R + RR R+ ++ R+ IL+GLL AYLNIDE+I IIR ED+PKP ++ F L+E Q Sbjct: 362 RSTVRRRLEHRLGKVEDRLHILEGLLAAYLNIDEVIRIIREEDEPKPALMEAFGLSERQA 421 Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488 +AIL LRLR L KLEE +I+ E D L E++++ LL + + I E+R E + Sbjct: 422 EAILELRLRHLAKLEEMKIRGEQDELEEERKRLKELLGNEAALTDLIERELRAAGEEYGD 481 Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548 RR E A +A + ++ +P+TVV+S +GWIRS K H +D + L +K G Sbjct: 482 P-----RRAPIVEREEA-RALSEVELVGADPVTVVLSEKGWIRSAKGHDIDPAGLSYKAG 535 Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608 D +A T ++LL G+AYTL A NL S R GE + +++ + + Sbjct: 536 DRFALAARGKTNQPLVLLDDTGRAYTLTAHNLPSARSQGEPVTGRVNVAAGAHMAGVMLG 595 Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVAVVG 665 T + L+ S G FI + ++ GK L V + +V + G VA V Sbjct: 596 PPTTRYLLASDGGYGFIAPLEALTGKSKSGKGVLSVPKGCNVLAPLMVPEGEGISVAAVS 655 Query: 666 ENRKLLIFSIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTWIDSAGRS 718 +LL+F +DQ+PEM++GKG ++ + ++ + D+ + L + + R Sbjct: 656 NEGRLLVFPLDQLPEMAKGKGNKMIDIPGARAARREEFLRDLTLLGPGQALV-VQAGKRK 714 Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGF 744 DL + G RG GS +P+G Sbjct: 715 LTLKAGDLDYYRGDRGRRGSKLPRGL 740 >gi|313500891|gb|ADR62257.1| ParC [Pseudomonas putida BIRD-1] Length = 752 Score = 520 bits (1338), Expect = e-145, Method: Compositional matrix adjust. Identities = 288/756 (38%), Positives = 452/756 (59%), Gaps = 29/756 (3%) Query: 6 ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65 +S+S L + V+ SL E+ YL Y++ I +RA+P + DG KPV RRI++AMSE+G Sbjct: 1 MSDSLELSLDGVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIVYAMSELG 60 Query: 66 LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124 LD A KKSAR VG+V+GK HPHGD + Y+++V +AQPF RY L+ GQGN+G D Sbjct: 61 LDADAKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPDDPK 120 Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184 S AA RYTEAR+++ AE++L V + VD+ ++ EP V P++ PN+L NGT+GIA Sbjct: 121 SFAAMRYTEARLSRYAEVLLSEVGQGTVDWVPNFDGTLQEPAVLPARLPNILLNGTTGIA 180 Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244 VGMAT +P HN++E+ A + L+D P+ ++E+L E+I GPD+PT IV R I++ Y Sbjct: 181 VGMATDVPPHNLREVASACVRLLDEPKATVEQLCEHIQGPDYPTEAEIVTPRAEILKMYE 240 Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304 GRG R+RA + VE+ IVVT +P+QV ++++E+IA + AK++P++ D+RDE Sbjct: 241 SGRGSIRMRAVYRVED-----GDIVVTALPHQVSGAKVLEQIAAQMQAKKLPMVADLRDE 295 Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362 S + RIV+ P++ +D D LM+ +F +D+E+ + +N+N++ + PQ+ L IL Sbjct: 296 SDHENPCRIVIIPRSNRVDVDELMQHLFATTDLESTYRVNVNIIGLDGRPQLKNLRTILV 355 Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422 EWL R + RR R+ +++R+ +L GLL A+LN+DE+I IIR E+ PK ++ RF Sbjct: 356 EWLEFRTNTVRRRLQHRLDKVEKRLHLLDGLLTAFLNLDEVIHIIRTEEYPKQALIERFE 415 Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482 LTE Q D IL RLR L +LEE +I+ E D LL E+ K+ +LL S + + E+ + Sbjct: 416 LTEIQADYILETRLRQLARLEEMKIRGEQDELLKEQAKLQALLGSEAKLRKLVRSELIKD 475 Query: 483 KEIFSKSTDLGRRRTTFCEVSRAD-KATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS 541 E + RR+ V+RA+ KA + ++ EP+TVV+S +GW+R K H +D + Sbjct: 476 AETYGDD-----RRSPI--VARAEAKALSENELMPTEPVTVVLSEKGWVRCAKGHDIDAT 528 Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD 601 L +K GD K A + +L+ + G++Y+L A +L S RG GE + + Sbjct: 529 GLSYKAGDGFKAAAAGRSNQFAVLIDSTGRSYSLAAHSLPSARGQGEPLTGRLTPPPGAT 588 Query: 602 IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTG 658 + D +V S G F+V+ ++ A + GK L + + K+ + V Sbjct: 589 FECVLLPDDDALYVVASDAGYGFVVKGEDLQAKNKAGKGLLSLPNGAKVMTPRPVADREQ 648 Query: 659 DHVAVVGENRKLLIFSIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTW 711 D +A V +LL+F + +P++ +GKG ++ + ++ ++D+ I EG T Sbjct: 649 DWLAAVTTEGRLLVFKVSDLPQLGKGKGNKIIGVPGDRVASREEFVTDLAV--IPEGATL 706 Query: 712 IDSAG-RSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746 + AG R+ + +DL + G+RG GS +P+GF R Sbjct: 707 VLQAGKRTLSLKADDLEHYKGERGRRGSKLPRGFQR 742 >gi|148549990|ref|YP_001270092.1| DNA topoisomerase IV subunit A [Pseudomonas putida F1] gi|148514048|gb|ABQ80908.1| DNA topoisomerase IV subunit A [Pseudomonas putida F1] Length = 752 Score = 520 bits (1338), Expect = e-145, Method: Compositional matrix adjust. Identities = 289/756 (38%), Positives = 452/756 (59%), Gaps = 29/756 (3%) Query: 6 ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65 +S+S L + V+ SL E+ YL Y++ I +RA+P + DG KPV RRI++AMSE+G Sbjct: 1 MSDSLELSLDGVERRSLAEFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIVYAMSELG 60 Query: 66 LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124 LD A KKSAR VG+V+GK HPHGD + Y+++V +AQPF RY L+ GQGN+G D Sbjct: 61 LDADAKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPDDPK 120 Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184 S AA RYTEAR+++ AE++L V + VD+ ++ EP V P++ PN+L NGT+GIA Sbjct: 121 SFAAMRYTEARLSRYAEVLLSEVGQGTVDWVPNFDGTLQEPAVLPARLPNILLNGTTGIA 180 Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244 VGMAT +P HN++E+ A + L+D P+ +IE+L E+I GPD+PT IV R I++ Y Sbjct: 181 VGMATDVPPHNLREVASACVRLLDEPKATIEQLCEHIQGPDYPTEAEIVTPRAEILKMYE 240 Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304 GRG R+RA + VE+ IVVT +P+QV ++++E+IA + AK++P++ D+RDE Sbjct: 241 SGRGSIRMRAVYRVED-----GDIVVTALPHQVSGAKVLEQIAAQMQAKKLPMVADLRDE 295 Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362 S + RIV+ P++ +D D LM+ +F +D+E+ + +N+N++ + PQ+ L IL Sbjct: 296 SDHENPCRIVIIPRSNRVDVDELMQHLFATTDLESTYRVNVNIIGLDGRPQLKNLRTILV 355 Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422 EWL R + RR R+ +++R+ +L GLL A+LN+DE+I IIR E+ PK ++ RF Sbjct: 356 EWLEFRTNTVRRRLQHRLDKVEKRLHLLDGLLTAFLNLDEVIHIIRTEEYPKQALIERFE 415 Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482 LTE Q D IL RLR L +LEE +I+ E D LL E+ K+ +LL S + + E+ + Sbjct: 416 LTEIQADYILETRLRQLARLEEMKIRGEQDELLKEQAKLQALLGSEAKLRKLVRSELIKD 475 Query: 483 KEIFSKSTDLGRRRTTFCEVSRAD-KATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS 541 E + RR+ V+RA+ KA + ++ EP+TVV+S +GW+R K H +D + Sbjct: 476 AETYGDD-----RRSPI--VARAEAKALSENELMPTEPVTVVLSEKGWVRCAKGHDIDAT 528 Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD 601 L +K GD K A + +L+ + G++Y+L A +L S RG GE + + Sbjct: 529 GLSYKAGDGFKAAAAGRSNQFAVLIDSTGRSYSLAAHSLPSARGQGEPLTGRLTPPPGAT 588 Query: 602 IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTG 658 + D +V S G F+V+ ++ A + GK L + + K+ + V Sbjct: 589 FECVLLPDDDALYVVASDAGYGFVVKGEDLQAKNKAGKGLLSLPNGAKVMTPRPVADREQ 648 Query: 659 DHVAVVGENRKLLIFSIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTW 711 D +A V +LL+F + +P++ +GKG ++ + ++ ++D+ I EG T Sbjct: 649 DWLAAVTTEGRLLVFKVSDLPQLGKGKGNKIIGVPGDRVASREEFVTDLAV--IPEGGTL 706 Query: 712 IDSAG-RSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746 + AG R+ + +DL + G+RG GS +P+GF R Sbjct: 707 VLQAGKRTLSLKADDLEHYKGERGRRGSKLPRGFQR 742 >gi|258626884|ref|ZP_05721688.1| DNA topoisomerase 4 subunit A [Vibrio mimicus VM603] gi|258580807|gb|EEW05752.1| DNA topoisomerase 4 subunit A [Vibrio mimicus VM603] Length = 761 Score = 520 bits (1338), Expect = e-145, Method: Compositional matrix adjust. Identities = 271/681 (39%), Positives = 424/681 (62%), Gaps = 17/681 (2%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 + V+ + LR E+ YL Y++ I +RA+P + DG KPV RRII+AMSE+GL A +KK Sbjct: 8 DGVEQLPLRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSASAKYKK 67 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTE 133 SAR VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S AA RYTE Sbjct: 68 SARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 127 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 A++++ AE++L + + V+++ ++ EP + P++ P++L NG +GIAVGMAT IP Sbjct: 128 AKLSKFAEILLSELGQGTVEWQPNFDGTMQEPKMLPARLPHILLNGVTGIAVGMATDIPP 187 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HNV+E+ +A + LID+P + L++Y+ GPDFPT I+ + + YR GRG R+R Sbjct: 188 HNVREVADATIHLIDHPSAPLTDLMQYVKGPDFPTEAEIITPTVELEKIYRSGRGSVRMR 247 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRI 311 A WC E GS IV+T +P+QV ++L+E+IA + AK++P++ED+RDES + RI Sbjct: 248 AVWCKE----GS-DIVITALPHQVSGAKLLEQIAAQMRAKKLPMVEDLRDESDHENPTRI 302 Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371 V+ P++ +D DLLM +F +D+E F +N+N++ + PQV L IL EW++ RRE Sbjct: 303 VIVPRSNRVDCDLLMNHLFASTDLEKSFRVNLNMIGLDNRPQVKGLVQILSEWISFRRET 362 Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431 + R +R+ + R+ IL+GLLIAYLNIDE+I IIR ED PK V+++RF LT Q DAI Sbjct: 363 VRSRLQYRLDKVLARLHILQGLLIAYLNIDEVIEIIRTEDDPKAVLMARFDLTGIQADAI 422 Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491 L+ +LR L KLEE +I+ E D L E++K++ LL S ++ N + EI+ + F Sbjct: 423 LDTKLRHLAKLEEMKIRGEQDELEKERKKLEELLGSERRLNNLLKKEIKADADKFGDD-- 480 Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551 RR+ E A KA ++ ++ E ITVV+S +GWIR K H VD +L++K GD+ Sbjct: 481 ---RRSPLVEREEA-KALTERDLMPSEAITVVLSEKGWIRHAKGHDVDCQSLNYKAGDNY 536 Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611 + + + L +DG++Y+L + L S RG GE I +++ I + + Sbjct: 537 LTHACGKSNQQAVFLGSDGRSYSLESHTLPSARGQGEPITGRLNVAEGTSIRQVVMGEED 596 Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVAVVGENR 668 LV S G F+ + ++++ R GK + + ++ +++ + D + + Sbjct: 597 QLWLVGSDAGYGFVCKGDDLLSKNRSGKALINLPENSEVMTPQVIADLDNDEILAITNQG 656 Query: 669 KLLIFSIDQIPEMSRGKGVRL 689 ++L+F I +P++S+GKG ++ Sbjct: 657 RMLLFPIKDLPQLSKGKGNKI 677 >gi|110835354|ref|YP_694213.1| DNA topoisomerase IV subunit A [Alcanivorax borkumensis SK2] gi|110648465|emb|CAL17941.1| DNA topoisomerase IV, A subunit [Alcanivorax borkumensis SK2] Length = 745 Score = 520 bits (1338), Expect = e-145, Method: Compositional matrix adjust. Identities = 275/743 (37%), Positives = 441/743 (59%), Gaps = 25/743 (3%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 + ++ L+ E+ YL Y++ I +RA+P++ DG KPV RRI++AMSE+GL A +KK Sbjct: 3 DEFESFPLKEYTEKAYLDYSMYVILDRALPNIGDGLKPVQRRIVYAMSELGLKNTAKYKK 62 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTE 133 SAR VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G+ D S AA RYTE Sbjct: 63 SARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGSADDPKSFAAMRYTE 122 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 +++ AE++L + + V++ ++ EP + P++ PN+L NGT+GIAVGM+T IP Sbjct: 123 SKLAPYAEVLLSELGQGTVEWLPNFDGTMDEPKLLPARLPNVLLNGTTGIAVGMSTDIPP 182 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN++E+ A + L+ +P S++ L++YI GPDFPT ++ I+ Y G+G + R Sbjct: 183 HNLREVANACIHLLKDPGASLDDLMQYIQGPDFPTEAEVITPINDIIRMYAQGKGSLKQR 242 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRI 311 A + EE IVVT +PYQV ++++E+IA+ + K++P++ D+RDES + R+ Sbjct: 243 AVYEREE-----GDIVVTALPYQVSGAKVLEQIADQMNKKKLPMVSDLRDESDHENPTRL 297 Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371 V+ P++ +D + LM +F +D+E + +N+N++ + PQV LD IL EWL R Sbjct: 298 VITPRSNRVDVEQLMSHLFASTDLEKNYRVNLNMIGIDGRPQVKSLDMILNEWLQFRMVT 357 Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431 + RR R+ + R+ IL+GLL A+LNIDE+I IIR ED PKPV++ RF +++ Q +AI Sbjct: 358 VRRRLQHRLDKVLERLHILEGLLAAFLNIDEVIHIIRTEDAPKPVLMERFGVSDRQAEAI 417 Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491 L L+LR L KLEE +I+ E D L E+E +++ L S + +A E+++ E + Sbjct: 418 LELKLRHLAKLEEMKIRGEQDELNEEREYLETTLGSMAKMKKLVAKELKDDAEKYGDD-- 475 Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551 RR+ E A KA + ++ +PITVV+S +GW+R+ K H VD+ L +K GD Sbjct: 476 ---RRSPLVEREDA-KALDESDLLSADPITVVLSEKGWVRAAKGHEVDVEGLSYKAGDKY 531 Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611 K + + + + G+ Y+LPA L S RG GE + + + A + Sbjct: 532 KACAKGKSNQSVCFIDSTGRTYSLPAHTLPSARGQGEPLSGRVSPPSGASFMAAVMGKDK 591 Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVAVVGENR 668 L+ + G F+V ++++AN + GKT L V ++ + + T D +A+V Sbjct: 592 DAYLMSTDAGYGFVVRYADLLANKKAGKTVLNVPKGARVLPPQPIASTTDDLIALVSNEG 651 Query: 669 KLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICF-------KICEGLTWIDSAGRSYNR 721 +LL+F + ++PEM RGKG ++ S ++D + F + LT + + R Sbjct: 652 RLLVFPVSELPEMVRGKGNKMMSIPGARVADRVEFVQDVQVVGPNDALT-LYAGKRHLTL 710 Query: 722 SENDLLGWLGKRGGVGSLVPKGF 744 NDL + G+RG G+ +P+GF Sbjct: 711 KANDLEHYYGERGRRGAKLPRGF 733 >gi|329911521|ref|ZP_08275556.1| Topoisomerase IV subunit A [Oxalobacteraceae bacterium IMCC9480] gi|327545861|gb|EGF30973.1| Topoisomerase IV subunit A [Oxalobacteraceae bacterium IMCC9480] Length = 772 Score = 520 bits (1338), Expect = e-145, Method: Compositional matrix adjust. Identities = 277/704 (39%), Positives = 418/704 (59%), Gaps = 33/704 (4%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 + + ++L E YL YA+S +K RA+PD+ DG KPV RRI+ AM+++GL+ A +K Sbjct: 17 DGAETLTLATFAERAYLDYAISVVKGRALPDVSDGQKPVQRRILFAMNQLGLNAAAKPRK 76 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 SA +VG+V+GKLHPHGDQSVYD+LVR+AQ F RYPLI GQGNFG+ DGD AAA RYTEA Sbjct: 77 SAAVVGDVLGKLHPHGDQSVYDALVRMAQGFSLRYPLIDGQGNFGSRDGDGAAAMRYTEA 136 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 R+T ++ L+L +D VDF+ Y+ EP + P + P +L NG SGIAVGMAT IPSH Sbjct: 137 RLTPISSLLLDEIDLGTVDFQPNYDGSTEEPSLLPGRLPFVLLNGASGIAVGMATEIPSH 196 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 N++E+ +AA+ALI NP ++ +L+ I GPDFP+GG I+ S ++ E Y GRG +VRA Sbjct: 197 NLREVAQAAVALIRNPALTHAELMAIIPGPDFPSGGQIITSAAALSEMYANGRGSLKVRA 256 Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAK------------------RIP 296 W +EE+ RG W VVTE+P+ +++E+I EL K + Sbjct: 257 LWKIEEMARGQWQAVVTELPHGTSAQKVLEEIEELTNPKIKLGKKALSPDQLAQKQLMLS 316 Query: 297 LLEDIRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQV 354 LL+ +RDES + VR+V PK+++ D + + +ET +N+ ++ P+ Sbjct: 317 LLDAVRDESGREAPVRLVFEPKSKNQDQTEFTNMLLAQTSLETSASINLVMIGGDGRPRQ 376 Query: 355 MPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK 414 L IL+EW+A R + + RRS FR++ ++ R+ IL+G LNIDE+I IIR D+PK Sbjct: 377 KGLGDILREWIAFRFDTVTRRSHFRLKKVEDRIHILEGRETILLNIDEVIRIIRESDEPK 436 Query: 415 PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQ 474 P ++ F L++ Q + IL +RLR L +LE +I+ EL L EK ++ LLN N Sbjct: 437 PALMGAFKLSDRQAEDILEIRLRQLARLEAIKIQQELAGLRTEKSTLEELLN------NP 490 Query: 475 IACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK 534 A + +KEI + G R T E A++AT++Q +I+ EP+TVVIS +GW+R+ Sbjct: 491 GAMKKLIIKEIDADEKRFGDARRTLIEA--AERATVEQKVID-EPVTVVISQKGWLRART 547 Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLI 594 H D + FK GD L T D +L ++G+ Y++ +L RG G I L+ Sbjct: 548 GHGHDPAQFAFKAGDDLYRTFECRTLDSLLAFGSNGRIYSIAVSSLPGARGDGAPISALV 607 Query: 595 DLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE---KMK 651 +L ++ F + +L+ S+ G FI +++I + GK F+ + + + + Sbjct: 608 ELASGSTVLHYFAGSADSTMLLASTAGYGFIARAADMIGRNKAGKAFITLDAGDLPLPPQ 667 Query: 652 LVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDG 695 +++ + GE R LL+F +D++ MS G+G+ L + +DG Sbjct: 668 MLIPSASSVACLSGEGR-LLVFGLDELKTMSGGRGMILMALEDG 710 >gi|269103507|ref|ZP_06156204.1| topoisomerase IV subunit A [Photobacterium damselae subsp. damselae CIP 102761] gi|268163405|gb|EEZ41901.1| topoisomerase IV subunit A [Photobacterium damselae subsp. damselae CIP 102761] Length = 754 Score = 520 bits (1338), Expect = e-145, Method: Compositional matrix adjust. Identities = 280/744 (37%), Positives = 445/744 (59%), Gaps = 23/744 (3%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 + V+ + LR E+ YL Y++ I +RA+P + DG KPV RRI++AMSE+GL A +KK Sbjct: 7 DGVEQLPLRKFTEDAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLSATAKYKK 66 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTE 133 SAR VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S AA RYTE Sbjct: 67 SARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 126 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 +R+++ +E++L + + VD++ ++ EP + P++ P++L NG +GIAVGMAT IP Sbjct: 127 SRLSRFSEVLLSELGQGTVDWQPNFDGTMKEPKMLPARLPHILLNGVTGIAVGMATDIPP 186 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN +E+ AA+ +IDNP+ ++ L+E++ GPD+PT I+ + + + YR GRG ++R Sbjct: 187 HNAREVAAAAVHMIDNPKADLDALMEFVKGPDYPTEAEIITPKAELKKVYRTGRGSIKMR 246 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRI 311 A W E + IV+T +P+QV ++L+E+IA + AK++P++ED+RDES + RI Sbjct: 247 AVWHKE-----NGDIVITSLPHQVSGAKLLEQIATQMRAKKLPMVEDLRDESDHENPTRI 301 Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371 V+ P++ +D + LM +F +D+E F +N+N+L + PQV L I+ EWL +RR Sbjct: 302 VVVPRSNRIDCEQLMNHLFASTDLEKSFRVNLNMLGLDGRPQVKGLVSIISEWLEYRRIT 361 Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431 + RR R+ + R+ IL+GLL AYLNIDE+I IIR+ED PK ++SRF LT Q DAI Sbjct: 362 VRRRLQHRLDKVTARLHILEGLLAAYLNIDEVIEIIRSEDDPKAELMSRFDLTAIQADAI 421 Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491 L ++LR L KLEE +I+ E D L EKE ++ LL S ++ I E+ E + Sbjct: 422 LEIKLRQLAKLEEIKIRGEQDELSKEKEHLEKLLGSERRLNTLIKKELLADAETYGDD-- 479 Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551 RR+ E + A KA ++ +I EPITVV+S +GWIR K H VD S L +K GDS Sbjct: 480 ---RRSPMVERAEA-KALTERDLIPSEPITVVLSEKGWIRHAKGHEVDPSTLSYKSGDSY 535 Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611 + + L +DG++Y L + +L S R GE I ++L ++ + + Sbjct: 536 LAHARGKSNQPAIFLGSDGRSYALESHSLPSARSQGEPITGRLNLTPGSNMRQVMMAEDE 595 Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVAVVGENR 668 L+ S G FI + S++++ + GK L + ++ + + + D + + Sbjct: 596 QLWLMASDAGYGFICKSSDMVSKNKSGKALLTLPENAQVMAPQEIRDIEHDQILAITNEG 655 Query: 669 KLLIFSIDQIPEMSRGKG---VRLQSYKDGGISDVICF--KICEGLTWIDSAG-RSYNRS 722 ++L+F I +P++ +GKG + + + + + + + + +G AG R + Sbjct: 656 RMLLFPIKDLPQLGKGKGNKIINIPAARSKSREEFLSYLQVLHDGAQVTLHAGKRKLSLK 715 Query: 723 ENDLLGWLGKRGGVGSLVPKGFPR 746 +DL + G+RG GS++P+G R Sbjct: 716 PSDLDNFRGERGRRGSILPRGLQR 739 >gi|26991590|ref|NP_747015.1| DNA topoisomerase IV subunit A [Pseudomonas putida KT2440] gi|24986679|gb|AAN70479.1|AE016689_7 DNA topoisomerase IV, A subunit [Pseudomonas putida KT2440] Length = 752 Score = 519 bits (1337), Expect = e-145, Method: Compositional matrix adjust. Identities = 288/756 (38%), Positives = 452/756 (59%), Gaps = 29/756 (3%) Query: 6 ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65 +S+S L + V+ SL E+ YL Y++ I +RA+P + DG KPV RRI++AMSE+G Sbjct: 1 MSDSLELSLDGVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIVYAMSELG 60 Query: 66 LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124 LD A KKSAR VG+V+GK HPHGD + Y+++V +AQPF RY L+ GQGN+G D Sbjct: 61 LDADAKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPDDPK 120 Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184 S AA RYTEAR+++ AE++L V + VD+ ++ EP V P++ PN+L NGT+GIA Sbjct: 121 SFAAMRYTEARLSRYAEVLLSEVGQGTVDWVPNFDGTLQEPAVLPARLPNILLNGTTGIA 180 Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244 VGMAT +P HN++E+ A + L+D P+ +IE+L E+I GPD+PT IV R I++ Y Sbjct: 181 VGMATDVPPHNLREVASACVRLLDEPKATIEQLCEHIQGPDYPTEAEIVTPRAEILKMYE 240 Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304 GRG R+RA + VE+ IVVT +P+QV ++++E+IA + AK++P++ D+RDE Sbjct: 241 SGRGSIRMRAVYRVED-----GDIVVTALPHQVSGAKVLEQIAAQMQAKKLPMVADLRDE 295 Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362 S + RIV+ P++ +D D LM+ +F +D+E+ + +N+N++ + PQ+ L +L Sbjct: 296 SDHENPCRIVIIPRSNRVDVDELMQHLFATTDLESTYRVNVNIIGLDGRPQLKNLRTLLV 355 Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422 EWL R + RR R+ +++R+ +L GLL A+LN+DE+I IIR E+ PK ++ RF Sbjct: 356 EWLEFRTNTVRRRLQHRLDKVEKRLHLLDGLLTAFLNLDEVIHIIRTEEYPKQALIERFE 415 Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482 LTE Q D IL RLR L +LEE +I+ E D LL E+ K+ +LL S + + E+ + Sbjct: 416 LTEIQADYILETRLRQLARLEEMKIRGEQDELLKEQAKLQALLGSEAKLRKLVRSELIKD 475 Query: 483 KEIFSKSTDLGRRRTTFCEVSRAD-KATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS 541 E + RR+ V+RA+ KA + ++ EP+TVV+S +GW+R K H +D + Sbjct: 476 AETYGDD-----RRSPI--VARAEAKALSENELMPTEPVTVVLSEKGWVRCAKGHDIDAT 528 Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD 601 L +K GD K A + +L+ + G++Y+L A +L S RG GE + + Sbjct: 529 GLSYKAGDGFKAAAAGRSNQFAVLIDSTGRSYSLAAHSLPSARGQGEPLTGRLTPPPGAT 588 Query: 602 IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTG 658 + D +V S G F+V+ ++ A + GK L + + K+ + V Sbjct: 589 FECVLLPDDDALYVVASDAGYGFVVKGEDLQAKNKAGKGLLSLPNGAKVMTPRPVADREQ 648 Query: 659 DHVAVVGENRKLLIFSIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTW 711 D +A V +LL+F + +P++ +GKG ++ + ++ ++D+ I EG T Sbjct: 649 DWLAAVTTEGRLLVFKVSDLPQLGKGKGNKIIGVPGDRVASREEFVTDLAV--IPEGATL 706 Query: 712 IDSAG-RSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746 + AG R+ + +DL + G+RG GS +P+GF R Sbjct: 707 VLQAGKRTLSLKADDLEHYKGERGRRGSKLPRGFQR 742 >gi|73760124|dbj|BAE19969.1| topoisomerase IV subunit A [Photobacterium damselae subsp. piscicida] Length = 754 Score = 519 bits (1337), Expect = e-145, Method: Compositional matrix adjust. Identities = 280/744 (37%), Positives = 445/744 (59%), Gaps = 23/744 (3%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 + V+ + LR E+ YL Y++ I +RA+P + DG KPV RRI++AMSE+GL A +KK Sbjct: 7 DGVEQLPLRKFTEDAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLSATAKYKK 66 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTE 133 SAR VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S AA RYTE Sbjct: 67 SARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 126 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 +R+++ +E++L + + VD++ ++ EP + P++ P++L NG +GIAVGMAT IP Sbjct: 127 SRLSRFSEVLLSELGQGTVDWQPNFDGTMKEPKMLPARLPHILLNGVTGIAVGMATDIPP 186 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN +E+ AA+ +IDNP+ ++ L+E++ GPD+PT I+ + + + YR GRG ++R Sbjct: 187 HNAREVAAAAVHMIDNPKADLDALMEFVKGPDYPTEAEIITPKAELKKVYRTGRGSIKMR 246 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRI 311 A W E + IV+T +P+QV ++L+E+IA + AK++P++ED+RDES + RI Sbjct: 247 AVWHKE-----NGDIVITSLPHQVSGAKLLEQIATQMRAKKLPMVEDLRDESDHENPTRI 301 Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371 V+ P++ +D + LM +F +D+E F +N+N+L + PQV L I+ EWL +RR Sbjct: 302 VVVPRSNRIDCEQLMNHLFASTDLEKSFRVNLNMLGLDGRPQVKGLVSIISEWLEYRRIT 361 Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431 + RR R+ + R+ IL+GLL AYLNIDE+I IIR+ED PK ++SRF LT Q DAI Sbjct: 362 VRRRLQHRLDKVTARLHILEGLLAAYLNIDEVIEIIRSEDDPKAELMSRFDLTAIQADAI 421 Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491 L ++LR L KLEE +I+ E D L EKE ++ LL S ++ I E+ E + Sbjct: 422 LEIKLRQLAKLEEIKIRGEQDELSKEKEHLEKLLGSERRLNTLIKKELLADAETYGDD-- 479 Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551 RR+ E + A KA ++ +I EPITVV+S +GWIR K H VD S L +K GDS Sbjct: 480 ---RRSPMVERAEA-KALTERDLIPSEPITVVLSEKGWIRHAKGHEVDPSTLSYKSGDSY 535 Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611 + + L +DG++Y L + +L S R GE I ++L ++ + + Sbjct: 536 LAHARGKSNQPAIFLGSDGRSYALESHSLPSARSQGEPITGRLNLTPGSNMRQVMMAEDE 595 Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVAVVGENR 668 L+ S G FI + S++++ + GK L + ++ + + + D + + Sbjct: 596 QLWLMASDAGYGFICKSSDMVSKNKSGKALLTLPENAQVMAPQEIRDIEHDQILAITNEG 655 Query: 669 KLLIFSIDQIPEMSRGKG---VRLQSYKDGGISDVICF--KICEGLTWIDSAG-RSYNRS 722 ++L+F I +P++ +GKG + + + + + + + + +G AG R + Sbjct: 656 RMLLFPIKDLPQLGKGKGNKIINIPAARSKSREEFLSYLQVLHDGAQVTLHAGKRKLSLK 715 Query: 723 ENDLLGWLGKRGGVGSLVPKGFPR 746 +DL + G+RG GS++P+G R Sbjct: 716 PSDLDNFRGERGRRGSILPRGLQR 739 >gi|16761950|ref|NP_457567.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29143437|ref|NP_806779.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213052530|ref|ZP_03345408.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213424351|ref|ZP_03357175.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213581150|ref|ZP_03362976.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213647440|ref|ZP_03377493.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|289827115|ref|ZP_06545904.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|25292861|pir||AF0888 topoisomerase IV chain A [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16504252|emb|CAD03006.1| topoisomerase IV subunit A [Salmonella enterica subsp. enterica serovar Typhi] gi|29139071|gb|AAO70639.1| topoisomerase IV subunit A [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 752 Score = 519 bits (1337), Expect = e-145, Method: Compositional matrix adjust. Identities = 275/740 (37%), Positives = 448/740 (60%), Gaps = 29/740 (3%) Query: 23 RFALEE----RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78 R AL E YL Y++ I +RA+P + DG KPV RRI++AMSE+GL+ A FKKSAR Sbjct: 7 RLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKFKKSART 66 Query: 79 VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMT 137 VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S AA RYTE+R++ Sbjct: 67 VGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLS 126 Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197 + AEL+L + + D+ ++ EP + P++ PN+L NGT+GIAVGMAT IP HN++ Sbjct: 127 KYAELLLSELGQGTADWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLR 186 Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257 E+ +AA+ LI+ P+ ++++LL+ + GPD+PT I+ R I + Y GRG R+RA W Sbjct: 187 EVAKAAITLIEQPKTTLDQLLDIVQGPDYPTEAEIIIPRAEIRKIYENGRGSVRMRAVWT 246 Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFP 315 E+ +V+T +P+QV ++++E+IA + K++P+++D+RDES + R+V+ P Sbjct: 247 KED-----GAVVITALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVP 301 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 ++ +D + +M +F +D+E + +N+N++ + P V L IL EWLA RR+ + RR Sbjct: 302 RSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEWLAFRRDTVRRR 361 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435 ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF ++E Q +AIL L+ Sbjct: 362 LNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGISETQAEAILELK 421 Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495 LR L KLEE +I+ E D L E++++ +L S ++ + E++ + + R Sbjct: 422 LRHLAKLEEMKIRGEQDELEKERDQLQGILASERKMNTLLKKELQADSDAYGDD-----R 476 Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555 R+ E A KA + M+ EP+T+V+S GW+RS K H +D L++K GDS K A+ Sbjct: 477 RSPLREREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAV 535 Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615 + ++ + T G++Y + L S RG GE + + L + + KLL Sbjct: 536 KGKSNQPVVFIDTTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVEHMLMEGDDQKLL 595 Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--KLVVKVTGDHVAVVGENRKLLIF 673 + S G F+ ++++A R GKT + + + LV+K D + + + ++L+F Sbjct: 596 MASDAGYGFVCTFNDLVARNRAGKTLITLPENAHVMPPLVIKDEHDMLLAITQAGRMLMF 655 Query: 674 SIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDL 726 +D +P++S+GKG ++ + D G++ + LT I R +L Sbjct: 656 PVDSLPQLSKGKGNKIINIPSAEAAKGDDGLAHLYVLPPQSTLT-IHVGKRKIKLRPEEL 714 Query: 727 LGWLGKRGGVGSLVPKGFPR 746 +G+RG G+L+ +G R Sbjct: 715 QKVVGERGRRGTLM-RGLQR 733 >gi|300718406|ref|YP_003743209.1| DNA topoisomerase 4 subunit A [Erwinia billingiae Eb661] gi|299064242|emb|CAX61362.1| DNA topoisomerase 4 subunit A [Erwinia billingiae Eb661] Length = 757 Score = 519 bits (1336), Expect = e-145, Method: Compositional matrix adjust. Identities = 275/751 (36%), Positives = 445/751 (59%), Gaps = 32/751 (4%) Query: 12 LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71 L ++ + +L EE YL Y++ I +RA+P + DG KPV RRI++AMSE+GL+ A Sbjct: 4 LTQDGAERRALHKFTEEAYLNYSMYVIMDRALPYIGDGLKPVQRRIVYAMSELGLNNSAK 63 Query: 72 FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYR 130 FKKSAR VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S AA R Sbjct: 64 FKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMR 123 Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190 YTE+R+++ AE++L + + VD+ ++ EP + P++ PN+L NGT+GIAVGMAT Sbjct: 124 YTESRLSKYAEVLLGELGQGTVDYVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATD 183 Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250 IP HN++E+ +AA+ALID P+ ++++LL+ + GPD+PT I+ R I + Y+ GRG Sbjct: 184 IPPHNLREVAKAAIALIDAPKTTLDELLDIVQGPDYPTEAEIITPRNEIRKIYQSGRGSV 243 Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-- 308 R+RA W E+ +V+T +P+QV +R++E+IA + K++P++ED+RDES + Sbjct: 244 RMRAVWKRED-----GDVVITALPHQVSGARVLEQIAAQMRNKKLPMVEDLRDESNHENP 298 Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368 R+V+ P++ +D D +M +F +D+E + +N+N++ + P V L IL EWL +R Sbjct: 299 TRLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLNNRPAVKNLLEILSEWLIYR 358 Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQV 428 R+ + RR R+ + RR+ IL+GLL+A+LNIDE+I IIR ED+PKPV++SRF ++E Q Sbjct: 359 RDTVRRRLQHRLDKVLRRLHILEGLLVAFLNIDEVIHIIRTEDEPKPVLMSRFEISETQA 418 Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488 +AIL L+LR L KLEE +I+ E D L E++++ +L S ++ + E++ +++ Sbjct: 419 EAILELKLRHLAKLEEMKIRGEQDELAKERDQLQGILASERKMNTLLKKELQADSDLYGD 478 Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548 RR+ E A KA + ++ EP+T+V+S GW+RS K H +D L +K G Sbjct: 479 D-----RRSPLREREEA-KAISESELVPSEPVTIVLSQSGWVRSAKGHDIDPGGLSYKAG 532 Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608 DS + A + ++ + + G++Y L L S RG GE + + + + Sbjct: 533 DSYRAAARGKSNQPVVFVDSTGRSYALDPITLPSARGQGEPLTGKLTPPPGAVMEQVLME 592 Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--KLVVKVTGDHVAVVGE 666 KLL+ S+ G F+ S++++ R GK L + K+ L + D + + Sbjct: 593 ADDQKLLMASNAGYGFVCTFSDLVSRNRAGKALLTLPQNAKVMTPLAIHHDDDLLLAITS 652 Query: 667 NRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTW-----------IDSA 715 ++L+F + +P++S+GKG ++ S I + L W + Sbjct: 653 AGRMLLFPVGDLPQLSKGKGNKIIS-----IPSAQAASGEDNLAWLLLLTPQTSVTLHVG 707 Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746 R +DL + +RG G+L+P+G R Sbjct: 708 KRKLTLKPDDLQKFRAERGRRGTLLPRGLQR 738 >gi|37527804|ref|NP_931149.1| DNA topoisomerase IV subunit A [Photorhabdus luminescens subsp. laumondii TTO1] gi|36787240|emb|CAE16321.1| topoisomerase IV subunit A [Photorhabdus luminescens subsp. laumondii TTO1] Length = 755 Score = 518 bits (1335), Expect = e-144, Method: Compositional matrix adjust. Identities = 273/745 (36%), Positives = 452/745 (60%), Gaps = 22/745 (2%) Query: 12 LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71 + + V+ + L E YL Y++ I +RA+P + DG KPV RRI++AMSE+GL+ A Sbjct: 4 ITHDGVERLPLHSFTETAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNNTAK 63 Query: 72 FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYR 130 FKKSAR VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S AA R Sbjct: 64 FKKSARTVGDVLGKYHPHGDGACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMR 123 Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190 YTE+R+++ AEL+L + VD+ ++ EP + P++ PN+L NGT+GIAVGMAT Sbjct: 124 YTESRLSKYAELLLAELGHGTVDWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATD 183 Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250 IP HN +E+ A + L+D P+ S++ L+E++ GPD+PT I+ S E I + Y+ GRG Sbjct: 184 IPPHNAREVVNALVMLLDKPQSSLDDLMEHVKGPDYPTEAEIITSHEDIRKIYKNGRGSV 243 Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-- 308 R+RA W E+ +V+T +P+QV ++++E+IA + AK++P+++D+RDES + Sbjct: 244 RMRAVWSKED-----GNVVITALPHQVSGAKVLEQIANQMRAKKLPMVDDLRDESDHENP 298 Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368 R+V+ P+ +D + +M +F +D+E + +N+N++ + P V L IL EWL R Sbjct: 299 TRLVIVPRTNRVDLEQVMNHLFATTDLEKSYRVNLNMIGLDNRPTVKGLVEILSEWLVFR 358 Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQV 428 RE + +R + R++ + +R+ +L+GLLIA+LNIDE+I IIR+ED+PKPV++SRF L+E Q Sbjct: 359 RETVRKRLNHRLEKVLKRLHVLEGLLIAFLNIDEVIHIIRSEDEPKPVLMSRFGLSETQT 418 Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488 +AIL L+LR L KLEE +I+ E L E++K+ ++L+S +++ N + KEI + Sbjct: 419 EAILELKLRHLAKLEEVKIRGEQSELAKERDKLQAILSS-ERKLNTLLK-----KEIMAD 472 Query: 489 STDLG-RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKE 547 + G RR+ E A KA + + EP+T+V+S GW+RS K H +D + L++K Sbjct: 473 AATYGDERRSPMRERDEA-KAMSEHDITPSEPVTIVLSEMGWVRSAKGHDIDPAGLNYKA 531 Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV 607 GDS + A + ++ + T G++Y+L +L S RG GE + + + + + Sbjct: 532 GDSFRGAARGKSNQPVVFIDTTGRSYSLDPRDLPSARGQGEPLTGKLTVPAGATVEHVLM 591 Query: 608 YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---DHVAVV 664 + L+VS G FI S+++A R GK + + ++ +++ D + + Sbjct: 592 APDEQQFLMVSDAGYGFICTFSDLVAKNRAGKALITLPENARVMTPLEINNPQDDMLLAI 651 Query: 665 GENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKIC---EGLTWIDSAGRSYNR 721 ++L+F + +P++S+GKG ++ S + +D++ + + + + R Sbjct: 652 TRAGRMLMFPVADLPQLSKGKGNKIISVQSAAENDLLSWLLILPPQSSITLYFGKRKLTL 711 Query: 722 SENDLLGWLGKRGGVGSLVPKGFPR 746 DL + G+RG G+ +P+G R Sbjct: 712 RPEDLQKFRGERGRKGTSLPRGLQR 736 >gi|331674565|ref|ZP_08375325.1| DNA topoisomerase IV, A subunit [Escherichia coli TA280] gi|331068659|gb|EGI40054.1| DNA topoisomerase IV, A subunit [Escherichia coli TA280] Length = 752 Score = 518 bits (1335), Expect = e-144, Method: Compositional matrix adjust. Identities = 274/740 (37%), Positives = 446/740 (60%), Gaps = 29/740 (3%) Query: 23 RFALEE----RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78 R AL E YL Y++ I +RA+P + DG KPV RRI++AMSE+GL+ A FKKSAR Sbjct: 7 RLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSART 66 Query: 79 VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMT 137 VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S AA RYTE+R++ Sbjct: 67 VGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLS 126 Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197 + +EL+L + + D+ ++ EP + P++ PN+L NGT+GIAVGMAT IP HN++ Sbjct: 127 KYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLR 186 Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257 E+ +AA+ALID P+ ++++LL+ + GPD+PT I+ SR I + Y GRG R+RA W Sbjct: 187 EVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWK 246 Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFP 315 E+ +V++ +P+QV +R++E+IA + K++P+++D+RDES + R+V+ P Sbjct: 247 KED-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVP 301 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 ++ +D D +M +F +D+E + +N+N++ + P V L IL EWL RR+ + RR Sbjct: 302 RSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRR 361 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435 ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF LTE Q +AIL L+ Sbjct: 362 LNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAEAILELK 421 Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495 LR L KLEE +I+ E L E++++ +L S ++ N + E++ + + R Sbjct: 422 LRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDD-----R 476 Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555 R+ E A KA + M+ EP+T+V+S GW+RS K H +D L++K GDS K A+ Sbjct: 477 RSPLQEREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAV 535 Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615 + ++ + + G++Y + L S RG GE + + L + + KLL Sbjct: 536 KGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMESDDQKLL 595 Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--KLVVKVTGDHVAVVGENRKLLIF 673 + S G F+ ++++A R GK + + + +V+K D + + + ++L+F Sbjct: 596 MASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIKDASDMLLAITQAGRMLMF 655 Query: 674 SIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDL 726 + +P++S+GKG ++ + + G++ + LT I R +L Sbjct: 656 PVSDLPQLSKGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLT-IHVGKRKIKLRPEEL 714 Query: 727 LGWLGKRGGVGSLVPKGFPR 746 G+RG G+L+ +G R Sbjct: 715 QKVTGERGRRGTLM-RGLQR 733 >gi|327482436|gb|AEA85746.1| DNA topoisomerase IV subunit A [Pseudomonas stutzeri DSM 4166] Length = 750 Score = 518 bits (1334), Expect = e-144, Method: Compositional matrix adjust. Identities = 282/753 (37%), Positives = 446/753 (59%), Gaps = 23/753 (3%) Query: 6 ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65 +S S L + V+ SL E+ YL Y++ I +RA+P + DG KPV RRI++AMSE+G Sbjct: 1 MSESLDLSLDGVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIVYAMSELG 60 Query: 66 LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124 L+ A KKSAR VG+V+GK HPHGD + Y+++V +AQPF RY L+ GQGN+G D Sbjct: 61 LNADAKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPDDPK 120 Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184 S AA RYTEAR+++ +E++L + + VD+ ++ EP P++ PNLL NGT+GIA Sbjct: 121 SFAAMRYTEARLSRYSEVLLSELGQGTVDWVPNFDGTLDEPATLPARLPNLLLNGTTGIA 180 Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244 VGMAT +P HN++E+ A + L+D P S+E+L E++ GPDFPT IV R +++ Y Sbjct: 181 VGMATDVPPHNLREVAAACVRLLDEPSASVEQLCEHVQGPDFPTEAEIVTPRADLLKIYE 240 Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304 GRG R+RA + VE+ IVVT +P+QV S+++E+IA + AK++P++ D+RDE Sbjct: 241 TGRGSVRMRAVYRVED-----GDIVVTALPHQVSGSKVLEQIAGQMQAKKLPMVADLRDE 295 Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362 S + RIV+ P++ +D + LM+ +F +D+E+ + +N NV+ + PQV L +L Sbjct: 296 SDHENPCRIVIIPRSNRVDVEALMQHLFATTDLESSYRVNTNVIGLDGRPQVKNLRTLLS 355 Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422 EWL +R + RR FR+ ++RR+ +L+GLL+A+LN+DE+I IIR ED+PKPV+++RF Sbjct: 356 EWLTYRIGTVRRRLQFRLDKVERRLHLLEGLLVAFLNLDEVIHIIRTEDQPKPVLMARFE 415 Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482 L+E Q D IL+ RLR L +LEE +I+ E D L E+E++ +LL S + + E+ E Sbjct: 416 LSELQADYILDTRLRQLARLEEMKIRGEQDELAKERERLLALLGSEAKLKKLVRKELLED 475 Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542 E + RR+ E + A +A + ++ EP+TVVIS +GW R K H +D Sbjct: 476 AETYGDD-----RRSPIVERAEA-RALTENELLPSEPVTVVISEKGWARCAKGHDIDAGG 529 Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602 L +K GD+ K A + + + + G++Y+L A L S RG GE + + Sbjct: 530 LSYKAGDNFKAAAAGRSNQYAVFIDSTGRSYSLAAHTLPSARGQGEPLTGRLTPPPGASF 589 Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGD 659 + D ++ S G F+V+ ++ A + GK L + + ++ + + D Sbjct: 590 ECVLLPDDEALYVIASDAGYGFVVKGEDLQAKNKAGKALLSLPAGARVVAPRPLASREDD 649 Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISD-----VICFKICEGLTWIDS 714 +A V +LL+F + +P++ +GKG ++ ++ V + G T + Sbjct: 650 WLAAVTTEGRLLVFPVRDLPQLGKGKGNKIIGIPGERVASREEYLVDLAVLPAGATLVLQ 709 Query: 715 AG-RSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746 AG R+ + DL + G+RG G+ +P+GF R Sbjct: 710 AGKRTLSLKAEDLEHYKGERGRRGNKLPRGFQR 742 >gi|74313561|ref|YP_311980.1| DNA topoisomerase IV subunit A [Shigella sonnei Ss046] gi|73857038|gb|AAZ89745.1| DNA topoisomerase IV subunit A [Shigella sonnei Ss046] Length = 752 Score = 518 bits (1334), Expect = e-144, Method: Compositional matrix adjust. Identities = 273/740 (36%), Positives = 447/740 (60%), Gaps = 29/740 (3%) Query: 23 RFALEE----RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78 R AL E YL Y++ I +RA+P + DG KPV RRI++AMSE+GL+ A FKKSAR Sbjct: 7 RLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSART 66 Query: 79 VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMT 137 VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S AA RYTE+R++ Sbjct: 67 VGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLS 126 Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197 + +EL+L + + D+ ++ EP + P++ PN+L NGT+GIAVGMAT IP HN++ Sbjct: 127 KYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLR 186 Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257 E+ +AA+ALID P+ ++++LL+ + GPD+PT I+ SR I + Y GRG R+RA W Sbjct: 187 EVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWK 246 Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFP 315 E+ +V++ +P+QV +R++E+IA + K++P+++D+RDES + R+V+ P Sbjct: 247 KED-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVP 301 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 ++ +D D +M +F +D+E + +N+N++ + P V L IL EWL RR+ + RR Sbjct: 302 RSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRR 361 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435 ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF LTE Q +AIL L+ Sbjct: 362 LNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAEAILELK 421 Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495 LR L KLEE +I+ E L E++++ +L S ++ N + E++ + + R Sbjct: 422 LRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDD-----R 476 Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555 R+ E A KA + M+ EP+T+V+S GW+RS K H +D L++K GDS K+A+ Sbjct: 477 RSPLQEREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKVAV 535 Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615 + ++ + + G++Y + L S RG GE + + L + + KLL Sbjct: 536 KGKSNQSVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMESDDQKLL 595 Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--KLVVKVTGDHVAVVGENRKLLIF 673 + S G F+ ++++A R GK + + + +V++ D + + + ++L+F Sbjct: 596 MASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMF 655 Query: 674 SIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDL 726 + +P++S+GKG ++ + + G++ + LT I R +L Sbjct: 656 PVSDLPQLSKGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLT-IHVGKRKIKLRPEEL 714 Query: 727 LGWLGKRGGVGSLVPKGFPR 746 G+RG G+L+ +G R Sbjct: 715 QKVTGERGRRGTLM-RGLQR 733 >gi|260857155|ref|YP_003231046.1| DNA topoisomerase IV subunit A [Escherichia coli O26:H11 str. 11368] gi|257755804|dbj|BAI27306.1| DNA topoisomerase IV subunit A [Escherichia coli O26:H11 str. 11368] gi|323154718|gb|EFZ40917.1| DNA topoisomerase IV, A subunit [Escherichia coli EPECa14] Length = 752 Score = 518 bits (1334), Expect = e-144, Method: Compositional matrix adjust. Identities = 274/740 (37%), Positives = 446/740 (60%), Gaps = 29/740 (3%) Query: 23 RFALEE----RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78 R AL E YL Y++ I +RA+P + DG KPV RRI++AMSE+GL+ A FKKSAR Sbjct: 7 RLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSART 66 Query: 79 VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMT 137 VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S AA RYTE+R++ Sbjct: 67 VGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLS 126 Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197 + +EL+L + + D+ ++ EP + P++ PN+L NGT+GIAVGMAT IP HN++ Sbjct: 127 KYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLR 186 Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257 E+ +AA+ALID P+ ++E+LL+ + GPD+PT I+ SR I + Y GRG R+RA W Sbjct: 187 EVAQAAIALIDQPKTTLEQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWK 246 Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFP 315 E+ +V++ +P+QV +R++E+IA + K++P+++D+RDES + R+V+ P Sbjct: 247 KED-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVP 301 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 ++ +D D +M +F +D+E + +N+N++ + P V L IL EWL RR+ + RR Sbjct: 302 RSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRR 361 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435 ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF LTE Q +AIL L+ Sbjct: 362 LNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAEAILELK 421 Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495 LR L KLEE +I+ E L E++++ +L S ++ N + E++ + + R Sbjct: 422 LRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDD-----R 476 Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555 R+ E A KA + M+ EP+T+V+S GW+RS K H +D L++K GDS K A+ Sbjct: 477 RSPLQEREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAV 535 Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615 + ++ + + G++Y + L S RG GE + + L + + KLL Sbjct: 536 KGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMESDDQKLL 595 Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--KLVVKVTGDHVAVVGENRKLLIF 673 + S G F+ ++++A R GK + + + +V++ D + + + ++L+F Sbjct: 596 MASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMF 655 Query: 674 SIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDL 726 + +P++S+GKG ++ + + G++ + LT I R +L Sbjct: 656 PVSDLPQLSKGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLT-IHVGKRKIKLRPEEL 714 Query: 727 LGWLGKRGGVGSLVPKGFPR 746 G+RG G+L+ +G R Sbjct: 715 QKVTGERGRRGTLM-RGLQR 733 >gi|307729037|ref|YP_003906261.1| DNA topoisomerase IV subunit A [Burkholderia sp. CCGE1003] gi|307583572|gb|ADN56970.1| DNA topoisomerase IV, A subunit [Burkholderia sp. CCGE1003] Length = 774 Score = 518 bits (1333), Expect = e-144, Method: Compositional matrix adjust. Identities = 276/693 (39%), Positives = 420/693 (60%), Gaps = 36/693 (5%) Query: 27 EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86 E YL YA+S +K RA+PD+ DG KPV RRI++AM+E+GL A KSAR+VG+VIGK Sbjct: 28 EGAYLQYAVSVVKGRALPDVCDGQKPVQRRILYAMNELGLSDNAKPVKSARVVGDVIGKY 87 Query: 87 HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQG 146 HPHGDQS YD+LVRLAQ F RYPLI GQGNFG+ DGD AAA RYTEAR+T +++L+L Sbjct: 88 HPHGDQSAYDALVRLAQDFAMRYPLIDGQGNFGSRDGDGAAAMRYTEARLTPISKLLLDE 147 Query: 147 VDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALAL 206 +D+ VDF Y+ + EP P++ P LL NG SGIAVG+AT IPSHN++E+ A +A+ Sbjct: 148 IDQGTVDFMPNYDGVEEEPRQLPARLPFLLLNGASGIAVGLATEIPSHNLREVAAATVAM 207 Query: 207 IDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSW 266 I NP+I+ +L++++ GPDFP GG I+ S I +Y GRG +VRARW +E++ RG W Sbjct: 208 IRNPKIAHAELMQHLPGPDFPGGGQIISSEAEIAAAYETGRGSLKVRARWKIEDLARGQW 267 Query: 267 CIVVTEIPYQVQKSRLIEKIAE-----LIIAKR-------------IPLLEDIRDESAED 308 +V+TE+P +++E+I E + + K+ + LL+ +RDES +D Sbjct: 268 QLVITELPPNTAAQKVLEEIEEQTNPKIKLGKKALTPEQLQAKQTMLGLLDAVRDESGKD 327 Query: 309 --VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366 VR+V PK+ +D + ++ + +E+ LN+ ++ P+ L IL EW+A Sbjct: 328 APVRLVFEPKSSRIDQTEFVNTLLAHTSLESNASLNLVMVGGDGRPRQKGLSEILHEWIA 387 Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426 R + RR+ R+ +D R+ IL+G +I YLNIDE+I IIR D+PK +++ F L++ Sbjct: 388 FRFATVTRRTRHRLTKVDDRIHILEGRMIVYLNIDEVIRIIRESDEPKVALMAAFGLSDR 447 Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486 Q D IL +RLR L +LE+ +I+ EL L EK K++ LL S + A + +KEI Sbjct: 448 QADDILEIRLRQLARLEKIKIEKELAELRDEKAKLEELLGS------ESAMKRLLIKEIE 501 Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546 + + G R T + + +AT + +I+ EP+TVV+S +GW+R+LK H +D + FK Sbjct: 502 ADAKQYGDERRTLIQQEK--RATYEARVID-EPVTVVVSQKGWVRALKGHGLDTAGFTFK 558 Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606 GD L A T D ++ ++G+ Y++ +L GRG G + LI+L ++ + Sbjct: 559 AGDGLYAAFQCRTPDTLVAWGSNGRVYSVAVASLPGGRGDGVPVTSLIELESGSHLMHYY 618 Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE----EKMKLVVKVTGDHVA 662 + LL+ SS G FI + ++++ + GK+F+ + + M L+ + VA Sbjct: 619 AASADQALLLASSNGFGFIAKVGDMVSRVKAGKSFMTIDAGAVPLAPMPLLPDAS--QVA 676 Query: 663 VVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKD 694 + +LL+F ID++ +S G+GV L + D Sbjct: 677 CLSSTGRLLVFGIDEMKTLSGGGRGVTLMALDD 709 >gi|330501588|ref|YP_004378457.1| DNA topoisomerase IV subunit A [Pseudomonas mendocina NK-01] gi|328915874|gb|AEB56705.1| DNA topoisomerase IV subunit A [Pseudomonas mendocina NK-01] Length = 749 Score = 518 bits (1333), Expect = e-144, Method: Compositional matrix adjust. Identities = 281/760 (36%), Positives = 453/760 (59%), Gaps = 27/760 (3%) Query: 6 ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65 +S S L E V+ SL E+ YL Y++ I +RA+P + DG KPV RRI++AMSE+G Sbjct: 1 MSESLDLSLEGVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIVYAMSELG 60 Query: 66 LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124 LD + KKSAR VG+V+GK HPHGD + Y+++V +AQPF RY L+ GQGN+G D Sbjct: 61 LDADSKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPDDPK 120 Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184 S AA RYTEAR+++ +E++L + + VD+ ++ +EP P++ PNLL NGT+GIA Sbjct: 121 SFAAMRYTEARLSRYSEVLLSELGQGTVDWVPNFDGTMNEPATLPARLPNLLLNGTTGIA 180 Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244 VGMAT +P HN++E+ A + L+D P ++E+L E++ GPDFPT ++ + +++ Y Sbjct: 181 VGMATDVPPHNLREVAAACVRLLDEPSATVEQLCEHVEGPDFPTEAEVITPKADLLKLYE 240 Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304 GRG R+RA + VE+ IVVT +P+QV ++++E+IA + AK++P++ D+RDE Sbjct: 241 TGRGSVRMRAVYRVED-----GDIVVTALPHQVSGAKVLEQIAAQMQAKKLPMVADLRDE 295 Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362 S + RIV+ P++ +D D LM +F +D+E+ + +N NV+ + PQV L +L Sbjct: 296 SDHENPTRIVIIPRSNRVDADELMTHLFATTDLESSYRVNTNVIGLDGKPQVKDLRTLLS 355 Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422 EWL +R + RR FR+ +++R+ +L+GLLIA+LN+DE+I IIR ED PKPV++ F Sbjct: 356 EWLVYRVGTVRRRLQFRLDKVEKRLHLLEGLLIAFLNLDEVIRIIRTEDSPKPVLMETFG 415 Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482 LT+ Q D IL+ RLR L +LEE +I+ E D L E+EK+ +LL+S + + EI E Sbjct: 416 LTDVQADYILDTRLRQLARLEEMKIRGEQDELAKEREKLLALLSSEAKLKKLVRKEILED 475 Query: 483 KEIFSKSTDLGRRRTTFCEVSRAD-KATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS 541 E + RR+ V+RA+ KA + ++ EP+TVV+S +GW+R K H +D + Sbjct: 476 AEKYGDD-----RRSPI--VARAEAKALSETELMPTEPVTVVLSEKGWVRCAKGHDIDAT 528 Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD 601 L +K GD K A + + + + G++Y+L A +L S RG GE + + Sbjct: 529 GLSYKAGDGFKAAAPGRSNQYAVFIDSTGRSYSLTAHSLPSARGQGEPLTGRLTPPPGAT 588 Query: 602 IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTG 658 + + + ++ S G F+V+ ++ A + GK L + + K+ K V + Sbjct: 589 FECVMLPEDSALYVIASDAGYGFVVKGEDLQAKNKAGKALLTLPNGAKVVAPKPVNNLED 648 Query: 659 DHVAVVGENRKLLIFSIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTW 711 D +A V +LL+F + +P++ +GKG ++ + ++ ++D+ L Sbjct: 649 DWLAAVTTEGRLLLFKVTDLPQLGKGKGNKIIGIPGERVASREEYLTDLAVLPSGSSLV- 707 Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751 + + R+ +DL + G+RG G+ +P+GF R + L Sbjct: 708 LQAGKRTLTLKADDLEHYKGERGRRGNKLPRGFQRVDQLL 747 >gi|300724858|ref|YP_003714183.1| DNA topoisomerase IV subunit A [Xenorhabdus nematophila ATCC 19061] gi|297631400|emb|CBJ92097.1| DNA topoisomerase IV, subunit A [Xenorhabdus nematophila ATCC 19061] Length = 750 Score = 518 bits (1333), Expect = e-144, Method: Compositional matrix adjust. Identities = 276/752 (36%), Positives = 445/752 (59%), Gaps = 33/752 (4%) Query: 12 LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71 + + V+ L E YL Y++ I +RA+P + DG KPV RRI++AMSE+GL A Sbjct: 4 ITHDGVERQPLHTFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLSSSAK 63 Query: 72 FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYR 130 FKKSAR VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S AA R Sbjct: 64 FKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMR 123 Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190 YTE+R+++ AEL+L + + VD+ ++ EP + P++ PN+L NGT+GIAVGMAT Sbjct: 124 YTESRLSKYAELLLSELGQGTVDWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATD 183 Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250 IP HN +E+ A +A++D PE+S+++ +EYI GPD+PT I+ ++ I + Y+ GRG Sbjct: 184 IPPHNAREVASALIAMLDKPELSLDEAMEYIKGPDYPTEAEIITPKDDIRKIYKNGRGSV 243 Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-- 308 R+RA W EE +++T +P+QV ++++E+IA + AK++P+++D+RDES + Sbjct: 244 RMRAIWSKEE-----GNVIITALPHQVSGAKVLEQIASQMRAKKLPMVDDLRDESDHENP 298 Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368 R+V+ P+ +D + +M +F +D+E + +N+N++ + P V L IL EWL +R Sbjct: 299 TRLVIVPRTNRVDVEQVMNHLFATTDLERSYRVNLNMIGLDNRPAVKGLVEILSEWLVYR 358 Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQV 428 RE + R + R++ + +R+ IL GLL AYLNIDE+I +IRNED+PKPV++ RF LTE Q Sbjct: 359 RETVRNRLNHRLEKVLKRLHILDGLLAAYLNIDEVIHLIRNEDEPKPVLMQRFGLTETQA 418 Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488 +A+L L+LR L KLEE +I+ E D L E++K+ S+L S +++ N + KEI + Sbjct: 419 EAVLELKLRHLAKLEEVKIRGEQDELSKERDKLQSILGS-ERKLNTLLK-----KEIIAD 472 Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548 + G R + + KA ++ EPITVV+S GW+RS K H +D + L++K G Sbjct: 473 AESYGDDRRSPLKERIEAKAMSDHDILPSEPITVVMSEMGWVRSAKGHEIDPAGLNYKSG 532 Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608 DS + A+ + ++ + T G++Y++ +L S RG GE + + L + + Sbjct: 533 DSFRSAVRGKSNQPVVFIDTTGRSYSVDPLDLPSARGQGEPLTGKLALPAGALVEHLLMA 592 Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH---VAVVG 665 K L+ S G FI S++IA R GK + + K+ +++ + + + Sbjct: 593 KEEQKFLMASDAGYGFICTFSDLIAKNRAGKALITLPENAKVMEPLEINNEQDEMLLAIT 652 Query: 666 ENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTW-----------IDS 714 + ++L+F + +P++S+GKG ++ S I + L+W + Sbjct: 653 KAGRMLMFPVSDLPQLSKGKGNKIVS-----IPAAQAVSGEDTLSWLLVLSPQSTITLYF 707 Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746 R DL + +RG G+ +P+G R Sbjct: 708 GKRKLQLRPEDLQKFRAERGRKGTSLPRGLQR 739 >gi|149693017|emb|CAK55543.1| topoisomerase IV subunit [Salmonella enterica subsp. enterica serovar Typhi] gi|149693019|emb|CAK55544.1| topoisomerase IV subunit [Salmonella enterica subsp. enterica serovar Typhi] Length = 752 Score = 517 bits (1332), Expect = e-144, Method: Compositional matrix adjust. Identities = 275/740 (37%), Positives = 448/740 (60%), Gaps = 29/740 (3%) Query: 23 RFALEE----RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78 R AL E YL Y++ I +RA+P + DG KPV RRI++AMSE+GL+ A FKKSAR Sbjct: 7 RLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKFKKSART 66 Query: 79 VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMT 137 VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S AA RYTE+R++ Sbjct: 67 VGDVLGKYHPHGDIACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLS 126 Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197 + AEL+L + + D+ ++ EP + P++ PN+L NGT+GIAVGMAT IP HN++ Sbjct: 127 KYAELLLSELGQGTADWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLR 186 Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257 E+ +AA+ LI+ P+ ++++LL+ + GPD+PT I+ R I + Y GRG R+RA W Sbjct: 187 EVAKAAITLIEQPKTTLDQLLDIVQGPDYPTEAEIIIPRAEIRKIYENGRGSVRMRAVWT 246 Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFP 315 E+ +V+T +P+QV ++++E+IA + K++P+++D+RDES + R+V+ P Sbjct: 247 KED-----GAVVITALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVP 301 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 ++ +D + +M +F +D+E + +N+N++ + P V L IL EWLA RR+ + RR Sbjct: 302 RSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEWLAFRRDTVRRR 361 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435 ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF ++E Q +AIL L+ Sbjct: 362 LNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGISETQAEAILELK 421 Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495 LR L KLEE +I+ E D L E++++ +L S ++ + E++ + + R Sbjct: 422 LRHLAKLEEMKIRGEQDELEKERDQLQGILASERKMNTLLKKELQADSDAYGDD-----R 476 Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555 R+ E A KA + M+ EP+T+V+S GW+RS K H +D L++K GDS K A+ Sbjct: 477 RSPLREREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAV 535 Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615 + ++ + T G++Y + L S RG GE + + L + + KLL Sbjct: 536 KGKSNQPVVFIDTTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVEHMLMEGDDQKLL 595 Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--KLVVKVTGDHVAVVGENRKLLIF 673 + S G F+ ++++A R GKT + + + LV+K D + + + ++L+F Sbjct: 596 MASDAGYGFVCTFNDLVARNRAGKTLITLPENAHVMPPLVIKDEHDMLLAITQAGRMLMF 655 Query: 674 SIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDL 726 +D +P++S+GKG ++ + D G++ + LT I R +L Sbjct: 656 PVDSLPQLSKGKGNKIINIPSAEAAKGDDGLAHLYVLPPQSTLT-IHVGKRKIKLRPEEL 714 Query: 727 LGWLGKRGGVGSLVPKGFPR 746 +G+RG G+L+ +G R Sbjct: 715 QKVVGERGRRGTLM-RGLQR 733 >gi|331684662|ref|ZP_08385254.1| DNA topoisomerase IV, A subunit [Escherichia coli H299] gi|331078277|gb|EGI49483.1| DNA topoisomerase IV, A subunit [Escherichia coli H299] Length = 752 Score = 517 bits (1332), Expect = e-144, Method: Compositional matrix adjust. Identities = 273/740 (36%), Positives = 446/740 (60%), Gaps = 29/740 (3%) Query: 23 RFALEE----RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78 R AL E YL Y++ I +RA+P + DG KPV RRI++AMSE+GL+ A FKKSAR Sbjct: 7 RLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSART 66 Query: 79 VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMT 137 VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S AA RYTE+R++ Sbjct: 67 VGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLS 126 Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197 + +EL+L + + D+ ++ EP + P++ PN+L NGT+GIAVGMAT IP HN++ Sbjct: 127 KYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLR 186 Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257 E+ +AA+ALID P+ ++++LL+ + GPD+PT I+ SR I + Y GRG R+RA W Sbjct: 187 EVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRIRAVWK 246 Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFP 315 E+ +V++ +P+QV +R++E+IA + K++P+++D+RDES + R+V+ P Sbjct: 247 KED-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVP 301 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 ++ +D D +M +F +D+E + +N+N++ + P V L IL EWL RR+ + RR Sbjct: 302 RSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRR 361 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435 ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF LTE Q +AIL L+ Sbjct: 362 LNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAEAILELK 421 Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495 LR L KLEE +I+ E L E++++ +L S ++ N + E++ + + R Sbjct: 422 LRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDE-----R 476 Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555 R+ E A KA + M+ EP+T+V+S GW+RS K H +D L++K GDS K A+ Sbjct: 477 RSPLQEREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAV 535 Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615 + ++ + + G++Y + L S RG GE + + L + + KLL Sbjct: 536 KGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMESDDQKLL 595 Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--KLVVKVTGDHVAVVGENRKLLIF 673 + S G F+ ++++A R GK + + + +V++ D + + + ++L+F Sbjct: 596 MASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMF 655 Query: 674 SIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDL 726 + +P++S+GKG ++ + + G++ + LT I R +L Sbjct: 656 PVSDLPQLSKGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLT-IHVGKRKIKLRPEEL 714 Query: 727 LGWLGKRGGVGSLVPKGFPR 746 G+RG G+L+ +G R Sbjct: 715 QKVTGERGRRGTLM-RGLQR 733 >gi|146284119|ref|YP_001174272.1| DNA topoisomerase IV subunit A [Pseudomonas stutzeri A1501] gi|145572324|gb|ABP81430.1| DNA topoisomerase IV, A subunit [Pseudomonas stutzeri A1501] Length = 750 Score = 517 bits (1332), Expect = e-144, Method: Compositional matrix adjust. Identities = 281/753 (37%), Positives = 446/753 (59%), Gaps = 23/753 (3%) Query: 6 ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65 +S S L + V+ SL E+ YL Y++ I +RA+P + DG KPV RRI++AMSE+G Sbjct: 1 MSESLDLSLDGVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIVYAMSELG 60 Query: 66 LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124 L+ A KKSAR VG+V+GK HPHGD + Y+++V +AQPF RY L+ GQGN+G D Sbjct: 61 LNADAKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPDDPK 120 Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184 S AA RYTEAR+++ +E++L + + VD+ ++ EP P++ PNLL NGT+GIA Sbjct: 121 SFAAMRYTEARLSRYSEVLLSELGQGTVDWVPNFDGTLDEPATLPARLPNLLLNGTTGIA 180 Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244 VGMAT +P HN++E+ A + L+D P S+E+L E++ GPDFPT IV R +++ Y Sbjct: 181 VGMATDVPPHNLREVAAACVRLLDEPSASVEQLCEHVQGPDFPTEAEIVTPRADLLKIYE 240 Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304 GRG R+RA + VE+ IVVT +P+QV S+++E+IA + AK++P++ D+RDE Sbjct: 241 TGRGSVRMRAVYRVED-----GDIVVTALPHQVSGSKVLEQIAGQMQAKKLPMVADLRDE 295 Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362 S + RIV+ P++ +D + LM+ +F +D+E+ + +N NV+ + PQV L +L Sbjct: 296 SDHENPCRIVIIPRSNRVDVEALMQHLFATTDLESSYRVNTNVIGLDGRPQVKNLRTLLS 355 Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422 EWL +R + RR FR+ +++R+ +L+GLL+A+LN+DE+I IIR ED+PKPV+++RF Sbjct: 356 EWLTYRIGTVRRRLQFRLDKVEKRLHLLEGLLVAFLNLDEVIHIIRTEDQPKPVLMARFE 415 Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482 L+E Q D IL+ RLR L +LEE +I+ E D L E+E++ +LL S + + E+ E Sbjct: 416 LSELQADYILDTRLRQLARLEEMKIRGEQDELAKERERLLALLGSEAKLKKLVRKELLED 475 Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542 E + RR+ E + A +A + ++ EP+TVVIS +GW R K H +D Sbjct: 476 AETYGDD-----RRSPIVERAEA-RALTENELLPSEPVTVVISEKGWARCAKGHDIDAGG 529 Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602 L +K GD+ K A + + + + G++Y+L A L S RG GE + + Sbjct: 530 LSYKAGDNFKAAAAGRSNQYAVFIDSTGRSYSLAAHTLPSARGQGEPLTGRLTPPPGASF 589 Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGD 659 + D ++ S G F+V+ ++ A + GK L + + ++ + + D Sbjct: 590 ECVLLPDDEALYVIASDAGYGFVVKGEDLQAKNKAGKALLSLPAGARVVAPRPLASREDD 649 Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISD-----VICFKICEGLTWIDS 714 +A V +LL+F + +P++ +GKG ++ ++ V + G T + Sbjct: 650 WLAAVTTEGRLLVFPVRDLPQLGKGKGNKIIGIPGERVASREEYLVDLAVLPAGATLVLQ 709 Query: 715 AG-RSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746 AG R+ + DL + G+RG G+ +P+GF R Sbjct: 710 AGKRTLSLKAEDLEHYKGERGRRGNKLPRGFQR 742 >gi|9971918|gb|AAG10480.1|AF279106_42 predicted topoisomerase IV subunit A [uncultured marine gamma proteobacterium EBAC31A08] Length = 749 Score = 517 bits (1332), Expect = e-144, Method: Compositional matrix adjust. Identities = 273/750 (36%), Positives = 462/750 (61%), Gaps = 22/750 (2%) Query: 13 VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72 ++E + ++SL+ EE YL YA+ I +RA+P++ DG KPV RRI++AMSE+GLD G+ + Sbjct: 1 MKEQITSISLKQYAEESYLNYAMYVILDRALPNIGDGLKPVQRRILYAMSELGLDAGSKY 60 Query: 73 KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRY 131 KKSAR VG+VIGK HPHGD + Y+++V +AQ F +YP + GQGN+G+ D S AA RY Sbjct: 61 KKSARTVGDVIGKFHPHGDGAAYEAMVLMAQNFSFKYPFVDGQGNWGSQDDPKSFAAMRY 120 Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191 TE+++T+ A L++ + VD++ ++ EPV+FP+K P++L NGTSGIAVGMAT I Sbjct: 121 TESKLTKFANLLISELKSGTVDWQPNFDGSLLEPVIFPAKLPSILLNGTSGIAVGMATDI 180 Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251 PSHN+ EI +A + LIDNP+ + LL+ I GPDF I+ S++ + E Y G+GGF+ Sbjct: 181 PSHNINEIIDATVHLIDNPKSQLVDLLKIINGPDFSNNSPIIASKDELNEIYSTGKGGFK 240 Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES--AEDV 309 +A+W ++ I++ +PYQ S+++E+IA+ ++ K+IP++ D+ DE E V Sbjct: 241 AQAQWAQDKN-----QIIINALPYQASGSKILEQIADQMLKKKIPMVVDLTDEGDHKEPV 295 Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369 R+V+ K+ ++ + +M +F +D++ + +NMN++S+ P+V L +LKEWL R+ Sbjct: 296 RLVITLKSNRVNAEDVMNHLFASTDLQKNYRVNMNLISLKGGPKVFSLVDLLKEWLVFRK 355 Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429 E + R+ R+ ++ R+ IL+GLLI YL++D++I IIR D+PK +++ F L++ Q + Sbjct: 356 ETVIRKLEHRLDQVNDRLHILEGLLIVYLDLDKVIKIIRESDEPKKDIITAFKLSDIQAN 415 Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489 AIL +RLR L KLE+ +++ E D L+AE+ I+ +L+S + I E+ E+K+ F + Sbjct: 416 AILEIRLRQLAKLEQIKLEQERDTLVAEQTDIEKILSSKTRLKTLIKNELIEIKDEFGEV 475 Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549 R + E + A + ++ ++ EPITVV+S GWIRS K H +D S+L ++ D Sbjct: 476 -----RXSPIREATEAKVFSEEETLV-TEPITVVLSAAGWIRSAKGHEIDPSSLSYRGED 529 Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609 L+ + + L ++GKAY+L + +L S RG G+ I + + +++ + + Sbjct: 530 VLQDYGRGKSNQVSVFLDSNGKAYSLASHSLPSARGMGDPITGRVSADSGVKFISSLIGN 589 Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH--VAVVGEN 667 K +++++ G +I E +++N + GK F+K+ E + +KV DH +A V Sbjct: 590 DEDKFMIMNTAGYGYISEFKNMVSNKKSGKAFMKIPHEADLLKAIKVRDDHLYIAAVSNI 649 Query: 668 RKLLIFSIDQIPEMSRGKG---VRLQSYKDGGISDVICFK--ICEGLTW-IDSAGRSYNR 721 +LLIF ID++P + +GKG + + + K +++ + E + I+S R Sbjct: 650 GRLLIFKIDELPTLGKGKGNKIINIPTAKFIAKEELMTHAQLVSEASSLRIESGKRFLTL 709 Query: 722 SENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751 DL ++ R G+++P+G+ + K + Sbjct: 710 KLKDLENYISTRAKRGNMLPQGYRKVDKMI 739 >gi|254482759|ref|ZP_05095997.1| DNA topoisomerase IV, A subunit [marine gamma proteobacterium HTCC2148] gi|214037118|gb|EEB77787.1| DNA topoisomerase IV, A subunit [marine gamma proteobacterium HTCC2148] Length = 750 Score = 517 bits (1332), Expect = e-144, Method: Compositional matrix adjust. Identities = 286/754 (37%), Positives = 457/754 (60%), Gaps = 31/754 (4%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 E+ ++ VSL+ E+ YL Y++ I +RA+P + DG KPV RRI++AMSE+GL A FK Sbjct: 9 EDGIEQVSLKTYAEKAYLDYSMYVILDRALPHVGDGLKPVQRRIVYAMSELGLKATAKFK 68 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYT 132 KSAR VG+VIGK HPHGD + Y+++V +AQ F RYPL+ GQGN+G+ D S AA RYT Sbjct: 69 KSARTVGDVIGKFHPHGDSAAYEAMVLMAQNFSYRYPLVDGQGNWGSPDDPKSFAAMRYT 128 Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192 E+R+T A+++L + + VD+ ++ EP V P++ PN+L NGT+GIAVGMAT +P Sbjct: 129 ESRLTAYADVLLSELGQGTVDWSPNFDGTMDEPTVLPAQVPNVLLNGTTGIAVGMATDVP 188 Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252 HN++E+ A + L+++P+ ++ +L E++ PDFPT I+ RE I+ Y GRG ++ Sbjct: 189 PHNLREVVAATIHLLESPKATVAELCEHVQAPDFPTDAEIITPREDIMAMYETGRGALKM 248 Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VR 310 RA W E IVV+ +P+QV S+++E+IA + AK++P++ D+RDES + R Sbjct: 249 RAVWEKE-----GPDIVVSALPHQVSGSKVLEQIAHQMQAKKLPMVADLRDESDHENPTR 303 Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370 +V+ P++ ++ + +M +F +D+E + +N+N++ + P V LD ILKEWL R E Sbjct: 304 LVIVPRSNRVEVEAVMNHLFATTDLERSYRVNLNMIGIDGRPGVKGLDRILKEWLKFRTE 363 Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDA 430 + RR +R++ + RR+ IL G L+A+LNIDE+I IIR EDKPKP ++ RF +++ Q +A Sbjct: 364 TVRRRLEYRLERVLRRLHILDGYLVAFLNIDEVIHIIRTEDKPKPALMKRFGISDVQAEA 423 Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490 IL+L+LR+L KLEE +I+ E D L E++++ ++L S + I E++ V E F Sbjct: 424 ILDLKLRNLAKLEEMKIRGEQDELEVERDQLQTILGSAARLKTLIKKELQSVAEKFGDD- 482 Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDS 550 RR+ A +A + ++ +PITVV+S +GWIR+ K H +D S+L +K GD Sbjct: 483 ----RRSPLMARGEA-QAFSELDLMTADPITVVMSEKGWIRAAKGHDIDPSSLSYKSGDG 537 Query: 551 LKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDS 610 K+A + ++L + G+AYT+P+ NL S RG GE + I+ + D Sbjct: 538 FKMAAKGRSNQPTVILDSTGRAYTVPSHNLPSARGQGEPVTGRINPPSGATFEGLMMGDE 597 Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTFL---KVSSEEKMKLVVKVTGDHVAVVGEN 667 L+ S G F+ + E+ + GK L K S + + + G VA V Sbjct: 598 GDLYLLASDAGYGFVAKLGELQTKNKAGKGALNLPKGSGVMQPAAISEAEGAWVAAVTNE 657 Query: 668 RKLLIFSIDQIPEMSRGKG--------VRLQSYKDGGISDVICFKI-CEGLTWIDSAGRS 718 +LL+F ++ +P+M+RGKG R+QS ++ VI ++ + T + AG+ Sbjct: 658 GRLLVFPLEDLPQMARGKGNKIIGIPTARVQSREEF----VIAVQVLTDKDTLVVYAGKR 713 Query: 719 YNRSE-NDLLGWLGKRGGVGSLVPKGFPRSGKFL 751 +++ + +DL + G+RG G+ +P+GF + L Sbjct: 714 HHKLKFSDLKHYCGERGRRGNKLPRGFQKVDAML 747 >gi|167551913|ref|ZP_02345666.1| DNA topoisomerase IV, A subunit [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205323307|gb|EDZ11146.1| DNA topoisomerase IV, A subunit [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] Length = 752 Score = 517 bits (1332), Expect = e-144, Method: Compositional matrix adjust. Identities = 273/740 (36%), Positives = 448/740 (60%), Gaps = 29/740 (3%) Query: 23 RFALEE----RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78 R AL E YL Y++ I +RA+P + DG KPV RRI++AMSE+GL+ A FKKSAR Sbjct: 7 RLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSART 66 Query: 79 VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMT 137 VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S AA RYTE+R++ Sbjct: 67 VGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLS 126 Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197 + AEL+L + + D+ ++ EP + P++ PN+L NGT+GIAVGMAT IP HN++ Sbjct: 127 KYAELLLSELGQGTADWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLR 186 Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257 E+ +AA+ LI+ P+ ++++LL+ + GPD+PT I+ R I + Y GRG R+RA W Sbjct: 187 EVAKAAITLIEQPKTTLDQLLDIVQGPDYPTEAEIITPRAEIRKIYENGRGSVRMRAVWT 246 Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFP 315 E+ +V++ +P+QV ++++E+IA + K++P+++D+RDES + R+V+ P Sbjct: 247 KED-----GAVVISALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVP 301 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 ++ +D + +M +F +D+E + +N+N++ + P V L IL EWLA RR+ + RR Sbjct: 302 RSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEWLAFRRDTVRRR 361 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435 ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF ++E Q +AIL L+ Sbjct: 362 LNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGISETQAEAILELK 421 Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495 LR L KLEE +I+ E D L E++++ +L S ++ + E++ + + R Sbjct: 422 LRHLAKLEEMKIRGEQDELEKERDQLQGILASERKMNTLLKKELQADSDAYGDD-----R 476 Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555 R+ E A KA + M+ EP+T+V+S GW+RS K H +D L++K GDS K A+ Sbjct: 477 RSPLREREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAV 535 Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615 + ++ + T G++Y + L S RG GE + + L + + KLL Sbjct: 536 KGKSNQPVVFIDTTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVEHMLMEGDDQKLL 595 Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--KLVVKVTGDHVAVVGENRKLLIF 673 + S G F+ ++++A R GKT + + + LV++ D + + + ++L+F Sbjct: 596 MASDAGYGFVCTFNDLVARNRAGKTLITLPENAHVMPPLVIEDEHDMLLAITQAGRMLMF 655 Query: 674 SIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDL 726 +D +P++S+GKG ++ + D G++ + LT I R +L Sbjct: 656 PVDSLPQLSKGKGNKIINIPSAEAAKGDDGLAHLYVLPPQSTLT-IHVGKRKIKLRPEEL 714 Query: 727 LGWLGKRGGVGSLVPKGFPR 746 +G+RG G+L+ +G R Sbjct: 715 QKVVGERGRRGTLM-RGLQR 733 >gi|326629208|gb|EGE35551.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 760 Score = 517 bits (1331), Expect = e-144, Method: Compositional matrix adjust. Identities = 272/747 (36%), Positives = 451/747 (60%), Gaps = 25/747 (3%) Query: 12 LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71 L+ + + ++L E YL Y++ I +RA+P + DG KPV RRI++AMSE+GL+ A Sbjct: 8 LMSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAK 67 Query: 72 FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYR 130 FKKSAR VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S AA R Sbjct: 68 FKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMR 127 Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190 YTE+R+++ AEL+L + + D+ ++ EP + P++ PN+L NGT+GIAVGMAT Sbjct: 128 YTESRLSKYAELLLSELGQGTADWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATD 187 Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250 IP HN++E+ +AA+ LI+ P+ ++++LL+ + GPD+PT I+ R I + Y GRG Sbjct: 188 IPPHNLREVAKAAITLIEQPKTTLDQLLDIVQGPDYPTEAEIITPRAEIRKIYENGRGSV 247 Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-- 308 R+RA W E+ +V+T +P+QV ++++E+IA + K++P+++D+RDES + Sbjct: 248 RMRAVWTKED-----GAVVITALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENP 302 Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368 R+V+ P++ +D + +M +F +D+E + +N+N++ + P V L IL EWLA R Sbjct: 303 TRLVIVPRSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEWLAFR 362 Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQV 428 R+ + RR ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF ++E Q Sbjct: 363 RDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGISETQA 422 Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488 +AIL L+LR L KLEE +I+ E D L E++++ +L S ++ + E++ + + Sbjct: 423 EAILELKLRHLAKLEEMKIRGEQDELEKERDQLQGILASERKMNTLLKKELQADSDAYGD 482 Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548 RR+ E A KA + M+ EP+T+V+S GW+RS K H +D L++K G Sbjct: 483 D-----RRSPLREREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAG 536 Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608 DS K A+ + ++ + T G++Y + L S RG GE + + L + + Sbjct: 537 DSFKAAVKGKSNQPVVFIDTTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVEHMLME 596 Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--KLVVKVTGDHVAVVGE 666 KLL+ S G F+ ++++A R GK + + + LV++ D + + + Sbjct: 597 GDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPLVIEDEHDMLLAITQ 656 Query: 667 NRKLLIFSIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTWIDSAGRSY 719 ++L+F +D +P++S+GKG ++ + D G++ + LT I R Sbjct: 657 AGRMLMFPVDSLPQLSKGKGNKIINIPSAEAAKGDDGLAHLYVLPPQSTLT-IHVGKRKI 715 Query: 720 NRSENDLLGWLGKRGGVGSLVPKGFPR 746 +L +G+RG G+L+ +G R Sbjct: 716 KLRPEELQKVVGERGRRGTLM-RGLQR 741 >gi|254491713|ref|ZP_05104892.1| DNA topoisomerase IV, A subunit [Methylophaga thiooxidans DMS010] gi|224463191|gb|EEF79461.1| DNA topoisomerase IV, A subunit [Methylophaga thiooxydans DMS010] Length = 746 Score = 517 bits (1331), Expect = e-144, Method: Compositional matrix adjust. Identities = 283/747 (37%), Positives = 449/747 (60%), Gaps = 25/747 (3%) Query: 11 TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70 T++ ++++ LR E+ YL Y++ I +RA+P + DG KPV RRI++AMSE+GL + Sbjct: 2 TIIVDDLEQQPLRDFTEKAYLDYSMYVILDRALPHIGDGLKPVQRRIVYAMSELGLSALS 61 Query: 71 AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAY 129 KKSAR VG+V+GK HPHGD + Y+++V +AQPF RY LI GQGN+G++D S AA Sbjct: 62 KHKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYTLIDGQGNWGSMDDPKSFAAM 121 Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189 RYTEAR+ A+++L + + D+ ++ EP + P++ PNLL NGT+GIAVGMAT Sbjct: 122 RYTEARLAPYAQVLLSELGQGTADWVPNFDGTMDEPSLLPARLPNLLLNGTTGIAVGMAT 181 Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249 IP HN++E+ A+L L+ +P +++++LLE I GPDFPTG I+ S++ I + Y G G Sbjct: 182 DIPPHNLREVVSASLKLLKSPRVTLDELLEDIQGPDFPTGAEIISSQDEIRKIYETGHGS 241 Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED- 308 + RA + E+ I++ +PYQV ++++E+IA + AK++P++ D+RDES + Sbjct: 242 VKQRASYNKED-----GEIIIDALPYQVSGAKILEQIAAQMNAKKLPMVADLRDESDHEH 296 Query: 309 -VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367 VR+V+ P++ +D D LM +F +D+E +NMN++ M PQV L +L EWL + Sbjct: 297 PVRLVIVPRSNRVDIDSLMSHLFATTDLERSHRVNMNMIGMDGRPQVKNLRDMLIEWLGY 356 Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQ 427 R E + RR +R+ + R+ +L+GLLIAYLNIDE+IAIIR+ED PK VM+ RFS+T+ Q Sbjct: 357 RVETVRRRLQYRLDKVLDRMHVLEGLLIAYLNIDEVIAIIRHEDDPKAVMMERFSITDRQ 416 Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487 ++IL LRLR L KLEE +I+ E+D L E+++++ LL+S + I E+ E F Sbjct: 417 AESILELRLRHLAKLEEMKIRGEMDELSKERKQLELLLSSDTRLKTLIRKELTADAEKFG 476 Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKE 547 RR+ E +A KA ++ EP+T+V+S GW+++ K H VD ++L+F+ Sbjct: 477 DD-----RRSQIVE-RKASKALDATELLPTEPLTIVLSESGWVKAAKGHDVDPTSLNFRT 530 Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV 607 GD ++ A + +I+ L G++Y+L A L S RG GE + + V+ Sbjct: 531 GDRYLTSVKARSNQQIVFLDETGRSYSLSAHTLPSARGQGEPLSGRLQSAPEVRFVSVLA 590 Query: 608 YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVAVV 664 ++ +L+ ++ G F+ ++A + GK + ++ L+ D +AV Sbjct: 591 VEADKTILLTNTAGYGFVTTLENLLAKNKAGKALFNLPKGAQILPPLLLEDQDNDQMAVA 650 Query: 665 GENRKLLIFSIDQIPEMSRGKGVRL----QSYKDGG---ISDVICFKICEGLTWIDSAGR 717 + +LL+F+ +IP +++GKGVRL Q+ GG + VI LT + + R Sbjct: 651 SGDGRLLVFAASEIPTLNKGKGVRLINIPQARFTGGQEWMQSVIIVPQQRSLT-LHAGRR 709 Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGF 744 DL + G+RG G +P+G Sbjct: 710 HLTLKPADLEHYAGERGKRGHKLPRGL 736 >gi|323971855|gb|EGB67080.1| DNA topoisomerase IV [Escherichia coli TA007] Length = 752 Score = 517 bits (1331), Expect = e-144, Method: Compositional matrix adjust. Identities = 273/740 (36%), Positives = 446/740 (60%), Gaps = 29/740 (3%) Query: 23 RFALEE----RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78 R AL E YL Y++ I +RA+P + DG KPV RRI++AMSE+GL+ A FKKSAR Sbjct: 7 RLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSART 66 Query: 79 VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMT 137 VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S AA RYTE+R++ Sbjct: 67 VGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLS 126 Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197 + +EL+L + + D+ ++ EP + P++ PN+L NGT+GIAVGMAT IP HN++ Sbjct: 127 KYSELLLSELGQGTADWMPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLR 186 Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257 E+ +AA+ALID P+ ++++LL+ + GPD+PT I+ SR I + Y GRG R+RA W Sbjct: 187 EVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWK 246 Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFP 315 E+ +V++ +P+QV +R++E+IA + K++P+++D+RDES + R+V+ P Sbjct: 247 KED-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVP 301 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 ++ +D D +M +F +D+E + +N+N++ + P V L IL EWL RR+ + RR Sbjct: 302 RSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRR 361 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435 ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF LTE Q +AIL L+ Sbjct: 362 LNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAEAILELK 421 Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495 LR L KLEE +I+ E L E++++ +L S ++ N + E++ + + R Sbjct: 422 LRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDD-----R 476 Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555 R+ E A KA + M+ EP+T+V+S GW+RS K H +D L++K GDS K A+ Sbjct: 477 RSPLQEREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAV 535 Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615 + ++ + + G++Y + L S RG GE + + L + + KLL Sbjct: 536 KGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMESDDQKLL 595 Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--KLVVKVTGDHVAVVGENRKLLIF 673 + S G F+ ++++A R GK + + + +V++ D + + + ++L+F Sbjct: 596 MASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMF 655 Query: 674 SIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDL 726 + +P++S+GKG ++ + + G++ + LT I R +L Sbjct: 656 PVSDLPQLSKGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLT-IHVGKRKIKLRPEEL 714 Query: 727 LGWLGKRGGVGSLVPKGFPR 746 G+RG G+L+ +G R Sbjct: 715 QKVTGERGRRGTLM-RGLQR 733 >gi|170765566|ref|ZP_02900377.1| DNA topoisomerase IV, A subunit [Escherichia albertii TW07627] gi|170124712|gb|EDS93643.1| DNA topoisomerase IV, A subunit [Escherichia albertii TW07627] Length = 752 Score = 516 bits (1330), Expect = e-144, Method: Compositional matrix adjust. Identities = 272/740 (36%), Positives = 450/740 (60%), Gaps = 29/740 (3%) Query: 23 RFALEE----RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78 R AL E YL Y++ I +RA+P + DG KPV RRI++AMSE+GL+ A FKKSAR Sbjct: 7 RLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSART 66 Query: 79 VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMT 137 VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S AA RYTE+R++ Sbjct: 67 VGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLS 126 Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197 + +EL+L + + D+ ++ EP + P++ PN+L NGT+GIAVGMAT IP HN++ Sbjct: 127 KYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLR 186 Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257 E+ +AA+ALID P+ ++++LL+ + GPD+PT I+ SR I + Y GRG R+RA W Sbjct: 187 EVAQAAIALIDEPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWK 246 Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFP 315 E+ +V++ +P+QV +R++E+IA + K++P+++D+RDES + +R+V+ P Sbjct: 247 KED-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPIRLVIVP 301 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 ++ +D D +M +F +D+E + +N+N++ + P V L IL EWL RR+ + RR Sbjct: 302 RSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRR 361 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435 ++R++ + +R+ IL+GLL+A+LNIDE+I IIR+ED+PKP ++SRF +TE Q +AIL L+ Sbjct: 362 LNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRSEDEPKPKLMSRFGITETQAEAILELK 421 Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495 LR L KLEE +I+ E + L E++++ S+L S ++ N + E++ + + R Sbjct: 422 LRHLAKLEEMKIRGEQNELEKERDQLQSILASERKMNNLLKKELQADAQAYGDE-----R 476 Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555 R+ E A KA + M+ EP+T+V+S GW+RS K H +D L++K GDS K A+ Sbjct: 477 RSPLQEREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAV 535 Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615 + ++ + + G++Y + L S RG GE + + L + + KLL Sbjct: 536 KGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMESDDQKLL 595 Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--KLVVKVTGDHVAVVGENRKLLIF 673 + S G F+ ++++A R GK + + + +V++ D + + + ++L+F Sbjct: 596 MASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMF 655 Query: 674 SIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDL 726 + +P++S+GKG ++ + + G++ + + LT I R +L Sbjct: 656 PVSDLPQLSKGKGNKIINIPSAEAARGEDGLAQLYVLPLQSTLT-IHVGKRKIKLRPEEL 714 Query: 727 LGWLGKRGGVGSLVPKGFPR 746 G+RG G+L+ +G R Sbjct: 715 QKVTGERGRRGTLM-RGLQR 733 >gi|88797643|ref|ZP_01113232.1| DNA topoisomerase IV, A subunit [Reinekea sp. MED297] gi|88779815|gb|EAR11001.1| DNA topoisomerase IV, A subunit [Reinekea sp. MED297] Length = 747 Score = 516 bits (1330), Expect = e-144, Method: Compositional matrix adjust. Identities = 281/740 (37%), Positives = 450/740 (60%), Gaps = 25/740 (3%) Query: 18 KAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSAR 77 + +SL E+ YL Y++ I +RA+P + DG KPV RRI++AMSE+GL A +KKSAR Sbjct: 9 ETISLGQFTEKAYLDYSMYVILDRALPHVGDGLKPVQRRIVYAMSELGLRNTAKYKKSAR 68 Query: 78 IVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARM 136 VG+V+GK HPHGD + Y+++V +AQ F RYPL+ GQGN+G+ D S AA RYTE+R+ Sbjct: 69 TVGDVLGKYHPHGDSACYEAMVLMAQSFSYRYPLVDGQGNWGSPDDPKSFAAMRYTESRL 128 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 + A L+L+ + + VD+ ++ EP V P++ P++L NGT+GIAVGMAT IP HN+ Sbjct: 129 HKNAHLLLEELGQGTVDWVPNFDGTMDEPSVLPARLPHVLLNGTTGIAVGMATDIPPHNL 188 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 +E+ A + LID P+ S+ L+ ++ GPDFPTG ++ +E I + Y GRG R+R+++ Sbjct: 189 KELAAACVHLIDQPDASVTDLMMHVRGPDFPTGAELISPKEDIRKIYEGGRGTLRLRSKY 248 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLF 314 E IV+TE+P+QV S+++E+IA+ + AK++P++ D+RDES + R+V+ Sbjct: 249 IQE-----GTDIVITELPHQVSGSKILEQIAQQMQAKKLPMVADLRDESDHENPTRLVIE 303 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 P++ +D D LM +F +D+E +N+N++ + PQV PL+ IL EWL R E + R Sbjct: 304 PRSNRVDTDALMNHLFATTDLEKTIRVNLNMIGIDGKPQVKPLNHILSEWLEFRTETVRR 363 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNL 434 R +R+ + R+ IL GLLIAYLNIDE+I IIR EDKPK +++RF L++ Q +AIL + Sbjct: 364 RLQYRLDKVLARLHILDGLLIAYLNIDEVIDIIRTEDKPKEELMARFGLSDVQAEAILEI 423 Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494 +LR L KLEE +I+ E D L E+++++ +L S + I KEI + + G Sbjct: 424 KLRQLAKLEEIKIRGEQDELSKERDQLEKILGSKARMRTLIK------KEILADAETYGD 477 Query: 495 RRTTFCEVSRADKATLQQA-MIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKI 553 R T VSRA+ + + ++ E +TVV+S RGWIRS K H ++ L++K GDS Sbjct: 478 DRRTLL-VSRAEASAFSETEILPSEAVTVVLSERGWIRSGKGHELEPEGLNYKSGDSFAF 536 Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613 A + +LL + G++Y+L L S RG GE I ++ + + + + Sbjct: 537 AARGKSNQATVLLDSTGRSYSLQTHTLPSARGQGEPITTRLNPPPGAAMKGLLLGNPDDQ 596 Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVAVVGENRKL 670 L+ S G FI + S++++ + GK L + ++ + V +++ D++A + +L Sbjct: 597 YLLTSDAGYGFIGKLSDMVSKNKAGKALLSLPKGAEVMPPQPVKQLSTDYLAAISNEGRL 656 Query: 671 LIFSIDQIPEMSRGKG---VRLQSYKDGGISDVICFKICEGL--TWIDSAG-RSYNRSEN 724 L+F + +PE+++GKG + + S + +++ + G T + AG R + Sbjct: 657 LVFPVRDLPELAKGKGNKIINIPSSRAAAREELMVGAVVLGADDTLLVYAGKRKLKLRGS 716 Query: 725 DLLGWLGKRGGVGSLVPKGF 744 DL +LG+RG G+ +P+GF Sbjct: 717 DLEHYLGERGRRGNKLPRGF 736 >gi|168819764|ref|ZP_02831764.1| DNA topoisomerase IV, A subunit [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205343323|gb|EDZ30087.1| DNA topoisomerase IV, A subunit [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|320087625|emb|CBY97389.1| topoisomerase IV subunit A [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] Length = 752 Score = 516 bits (1330), Expect = e-144, Method: Compositional matrix adjust. Identities = 273/740 (36%), Positives = 447/740 (60%), Gaps = 29/740 (3%) Query: 23 RFALEE----RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78 R AL E YL Y++ I +RA+P + DG KPV RRI++AMSE+GL+ A FKKSAR Sbjct: 7 RLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSART 66 Query: 79 VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMT 137 VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S AA RYTE+R++ Sbjct: 67 VGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLS 126 Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197 + AEL+L + + D+ ++ EP + P++ PN+L NGT+GIAVGMAT IP HN++ Sbjct: 127 KYAELLLSELGQGTADWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLR 186 Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257 E+ +AA+ LI+ P+ ++++LL+ + GPD+PT I+ R I + Y GRG R+RA W Sbjct: 187 EVAKAAITLIEQPKTTLDQLLDIVQGPDYPTEAEIITPRAEIRKIYENGRGSVRMRAVWT 246 Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFP 315 E+ +V+T +P+QV ++++E+IA + K++P+++D+RDES + R+V+ P Sbjct: 247 KED-----GAVVITALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVP 301 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 ++ +D + +M +F +D+E + +N+N++ + P V L IL EWLA RR+ + RR Sbjct: 302 RSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEWLAFRRDTVRRR 361 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435 ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF ++E Q +AIL L+ Sbjct: 362 LNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGISETQAEAILELK 421 Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495 LR L KLEE +I+ E D L E++++ +L S ++ + E++ + + R Sbjct: 422 LRHLAKLEEMKIRGEQDELEKERDQLQGILASERKMNTLLKKELQADSDAYGDD-----R 476 Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555 R+ E A KA + M+ EP+T+V+S GW+RS K H +D L++K GDS K A+ Sbjct: 477 RSPLREREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAV 535 Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615 + ++ + T G++Y + L S RG GE + + L + + KLL Sbjct: 536 KGKSNQPVVFIDTTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVEHMLMEGDDQKLL 595 Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--KLVVKVTGDHVAVVGENRKLLIF 673 + S G F+ ++++A R GK + + + LV++ D + + + ++L+F Sbjct: 596 MASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPLVIEDEHDMLLAITQAGRMLMF 655 Query: 674 SIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDL 726 +D +P++S+GKG ++ + D G++ + LT I R +L Sbjct: 656 PVDSLPQLSKGKGNKIINIPSAEAAKGDDGLAHLYVLPPQSTLT-IHVGKRKIKLRPEEL 714 Query: 727 LGWLGKRGGVGSLVPKGFPR 746 +G+RG G+L+ +G R Sbjct: 715 QKVVGERGRRGTLM-RGLQR 733 >gi|323168137|gb|EFZ53824.1| DNA topoisomerase IV, A subunit [Shigella sonnei 53G] Length = 752 Score = 516 bits (1330), Expect = e-144, Method: Compositional matrix adjust. Identities = 273/740 (36%), Positives = 446/740 (60%), Gaps = 29/740 (3%) Query: 23 RFALEE----RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78 R AL E YL Y++ I +RA+P + DG KPV RRI++AMSE+GL+ A FKKSAR Sbjct: 7 RLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSART 66 Query: 79 VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMT 137 VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S AA RYTE+R++ Sbjct: 67 VGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLS 126 Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197 + +EL+L + + D+ ++ EP + P++ PN+L NGT+GIAVGMAT IP HN++ Sbjct: 127 KYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLR 186 Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257 E+ +AA+ALID P+ ++++LL+ + GPD+PT I+ SR I + Y GRG R+RA W Sbjct: 187 EVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWK 246 Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFP 315 E+ +V++ +P+QV +R++E+IA + K++P+++D+RDES + R+V+ P Sbjct: 247 KED-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVP 301 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 ++ +D D +M +F +D+E + +N+N++ + P V L IL EWL RR+ + RR Sbjct: 302 RSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRR 361 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435 ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF LTE Q +AIL L+ Sbjct: 362 LNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAEAILELK 421 Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495 LR L KLEE +I+ E L E++++ +L S ++ N + E++ + + R Sbjct: 422 LRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDD-----R 476 Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555 R+ E A KA + M+ EP+T+V+S GW+RS K H +D L++K GDS K A+ Sbjct: 477 RSPLQEREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAV 535 Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615 + ++ + + G++Y + L S RG GE + + L + + KLL Sbjct: 536 KGKSNQSVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMESDDQKLL 595 Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--KLVVKVTGDHVAVVGENRKLLIF 673 + S G F+ ++++A R GK + + + +V++ D + + + ++L+F Sbjct: 596 MASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMF 655 Query: 674 SIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDL 726 + +P++S+GKG ++ + + G++ + LT I R +L Sbjct: 656 PVSDLPQLSKGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLT-IHVGKRKIKLRPEEL 714 Query: 727 LGWLGKRGGVGSLVPKGFPR 746 G+RG G+L+ +G R Sbjct: 715 QKVTGERGRRGTLM-RGLQR 733 >gi|300937506|ref|ZP_07152328.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 21-1] gi|300457445|gb|EFK20938.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 21-1] Length = 752 Score = 516 bits (1330), Expect = e-144, Method: Compositional matrix adjust. Identities = 273/740 (36%), Positives = 446/740 (60%), Gaps = 29/740 (3%) Query: 23 RFALEE----RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78 R AL E YL Y++ I +RA+P + DG KPV RRI++AMSE+GL+ A FKKSAR Sbjct: 7 RLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSART 66 Query: 79 VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMT 137 VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S AA RYTE+R++ Sbjct: 67 VGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLS 126 Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197 + +EL+L + + D+ ++ EP + P++ PN+L NGT+GIAVGMAT IP HN++ Sbjct: 127 KYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLR 186 Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257 E+ +AA+ALID P+ ++++LL+ + GPD+PT I+ SR I + Y GRG R+RA W Sbjct: 187 EVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWK 246 Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFP 315 E+ +V++ +P+QV +R++E+IA + K++P+++D+RDES + R+V+ P Sbjct: 247 KED-----GAVVISSLPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVP 301 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 ++ +D D +M +F +D+E + +N+N++ + P V L IL EWL RR+ + RR Sbjct: 302 RSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRR 361 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435 ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF LTE Q +AIL L+ Sbjct: 362 LNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAEAILELK 421 Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495 LR L KLEE +I+ E L E++++ +L S ++ N + E++ + + R Sbjct: 422 LRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDD-----R 476 Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555 R+ E A KA + M+ EP+T+V+S GW+RS K H +D L++K GDS K A+ Sbjct: 477 RSPLQEREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAV 535 Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615 + ++ + + G++Y + L S RG GE + + L + + KLL Sbjct: 536 KGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMESDDQKLL 595 Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--KLVVKVTGDHVAVVGENRKLLIF 673 + S G F+ ++++A R GK + + + +V++ D + + + ++L+F Sbjct: 596 MASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMF 655 Query: 674 SIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDL 726 + +P++S+GKG ++ + + G++ + LT I R +L Sbjct: 656 PVSDLPQLSKGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLT-IHVGKRKIKLRPEEL 714 Query: 727 LGWLGKRGGVGSLVPKGFPR 746 G+RG G+L+ +G R Sbjct: 715 QKVTGERGRRGTLM-RGLQR 733 >gi|26249591|ref|NP_755631.1| DNA topoisomerase IV subunit A [Escherichia coli CFT073] gi|110643262|ref|YP_670992.1| DNA topoisomerase IV subunit A [Escherichia coli 536] gi|227887731|ref|ZP_04005536.1| DNA topoisomerase IV subunit A [Escherichia coli 83972] gi|293412396|ref|ZP_06655119.1| DNA topoisomerase IV [Escherichia coli B354] gi|300973292|ref|ZP_07172131.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 45-1] gi|301020007|ref|ZP_07184139.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 196-1] gi|301048157|ref|ZP_07195194.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 185-1] gi|331648814|ref|ZP_08349902.1| DNA topoisomerase IV, A subunit [Escherichia coli M605] gi|26109999|gb|AAN82204.1|AE016766_292 Topoisomerase IV subunit A [Escherichia coli CFT073] gi|110344854|gb|ABG71091.1| topoisomerase IV subunit A [Escherichia coli 536] gi|227835127|gb|EEJ45593.1| DNA topoisomerase IV subunit A [Escherichia coli 83972] gi|284923042|emb|CBG36135.1| topoisomerase IV subunit A [Escherichia coli 042] gi|291469167|gb|EFF11658.1| DNA topoisomerase IV [Escherichia coli B354] gi|299881964|gb|EFI90175.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 196-1] gi|300299993|gb|EFJ56378.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 185-1] gi|300410872|gb|EFJ94410.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 45-1] gi|307555117|gb|ADN47892.1| topoisomerase IV subunit A [Escherichia coli ABU 83972] gi|315295061|gb|EFU54398.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 153-1] gi|330909081|gb|EGH37595.1| topoisomerase 4 subunit A [Escherichia coli AA86] gi|331042561|gb|EGI14703.1| DNA topoisomerase IV, A subunit [Escherichia coli M605] Length = 752 Score = 516 bits (1330), Expect = e-144, Method: Compositional matrix adjust. Identities = 273/740 (36%), Positives = 446/740 (60%), Gaps = 29/740 (3%) Query: 23 RFALEE----RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78 R AL E YL Y++ I +RA+P + DG KPV RRI++AMSE+GL+ A FKKSAR Sbjct: 7 RLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSART 66 Query: 79 VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMT 137 VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S AA RYTE+R++ Sbjct: 67 VGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLS 126 Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197 + +EL+L + + D+ ++ EP + P++ PN+L NGT+GIAVGMAT IP HN++ Sbjct: 127 KYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLR 186 Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257 E+ +AA+ALID P+ ++++LL+ + GPD+PT I+ SR I + Y GRG R+RA W Sbjct: 187 EVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWK 246 Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFP 315 E+ +V++ +P+QV +R++E+IA + K++P+++D+RDES + R+V+ P Sbjct: 247 KED-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVP 301 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 ++ +D D +M +F +D+E + +N+N++ + P V L IL EWL RR+ + RR Sbjct: 302 RSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRR 361 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435 ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF LTE Q +AIL L+ Sbjct: 362 LNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAEAILELK 421 Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495 LR L KLEE +I+ E L E++++ +L S ++ N + E++ + + R Sbjct: 422 LRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDE-----R 476 Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555 R+ E A KA + M+ EP+T+V+S GW+RS K H +D L++K GDS K A+ Sbjct: 477 RSPLQEREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAV 535 Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615 + ++ + + G++Y + L S RG GE + + L + + KLL Sbjct: 536 KGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMESDDQKLL 595 Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--KLVVKVTGDHVAVVGENRKLLIF 673 + S G F+ ++++A R GK + + + +V++ D + + + ++L+F Sbjct: 596 MASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMF 655 Query: 674 SIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDL 726 + +P++S+GKG ++ + + G++ + LT I R +L Sbjct: 656 PVSDLPQLSKGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLT-IHVGKRKIKLRPEEL 714 Query: 727 LGWLGKRGGVGSLVPKGFPR 746 G+RG G+L+ +G R Sbjct: 715 QKVTGERGRRGTLM-RGLQR 733 >gi|15803563|ref|NP_289596.1| DNA topoisomerase IV subunit A [Escherichia coli O157:H7 EDL933] gi|15833157|ref|NP_311930.1| DNA topoisomerase IV subunit A [Escherichia coli O157:H7 str. Sakai] gi|16130915|ref|NP_417491.1| DNA topoisomerase IV, subunit A [Escherichia coli str. K-12 substr. MG1655] gi|24114324|ref|NP_708834.1| DNA topoisomerase IV subunit A [Shigella flexneri 2a str. 301] gi|30064372|ref|NP_838543.1| DNA topoisomerase IV subunit A [Shigella flexneri 2a str. 2457T] gi|89109789|ref|AP_003569.1| DNA topoisomerase IV, subunit A [Escherichia coli str. K-12 substr. W3110] gi|110806916|ref|YP_690436.1| DNA topoisomerase IV subunit A [Shigella flexneri 5 str. 8401] gi|157158561|ref|YP_001464484.1| DNA topoisomerase IV subunit A [Escherichia coli E24377A] gi|157162495|ref|YP_001459813.1| DNA topoisomerase IV subunit A [Escherichia coli HS] gi|168747473|ref|ZP_02772495.1| DNA topoisomerase IV, A subunit [Escherichia coli O157:H7 str. EC4113] gi|168753987|ref|ZP_02778994.1| DNA topoisomerase IV, A subunit [Escherichia coli O157:H7 str. EC4401] gi|168760178|ref|ZP_02785185.1| DNA topoisomerase IV, A subunit [Escherichia coli O157:H7 str. EC4501] gi|168767040|ref|ZP_02792047.1| DNA topoisomerase IV, A subunit [Escherichia coli O157:H7 str. EC4486] gi|168773326|ref|ZP_02798333.1| DNA topoisomerase IV, A subunit [Escherichia coli O157:H7 str. EC4196] gi|168781893|ref|ZP_02806900.1| DNA topoisomerase IV, A subunit [Escherichia coli O157:H7 str. EC4076] gi|168785891|ref|ZP_02810898.1| DNA topoisomerase IV, A subunit [Escherichia coli O157:H7 str. EC869] gi|168797609|ref|ZP_02822616.1| DNA topoisomerase IV, A subunit [Escherichia coli O157:H7 str. EC508] gi|170018727|ref|YP_001723681.1| DNA topoisomerase IV subunit A [Escherichia coli ATCC 8739] gi|170082562|ref|YP_001731882.1| DNA topoisomerase IV, subunit A [Escherichia coli str. K-12 substr. DH10B] gi|188494635|ref|ZP_03001905.1| DNA topoisomerase IV, A subunit [Escherichia coli 53638] gi|193062029|ref|ZP_03043125.1| DNA topoisomerase IV, A subunit [Escherichia coli E22] gi|193067270|ref|ZP_03048238.1| DNA topoisomerase IV, A subunit [Escherichia coli E110019] gi|194426504|ref|ZP_03059059.1| DNA topoisomerase IV, A subunit [Escherichia coli B171] gi|194431598|ref|ZP_03063889.1| DNA topoisomerase IV, A subunit [Shigella dysenteriae 1012] gi|194436767|ref|ZP_03068867.1| DNA topoisomerase IV, A subunit [Escherichia coli 101-1] gi|195937163|ref|ZP_03082545.1| DNA topoisomerase IV subunit A [Escherichia coli O157:H7 str. EC4024] gi|208806097|ref|ZP_03248434.1| DNA topoisomerase IV, A subunit [Escherichia coli O157:H7 str. EC4206] gi|208812217|ref|ZP_03253546.1| DNA topoisomerase IV, A subunit [Escherichia coli O157:H7 str. EC4045] gi|208818498|ref|ZP_03258818.1| DNA topoisomerase IV, A subunit [Escherichia coli O157:H7 str. EC4042] gi|209398989|ref|YP_002272495.1| DNA topoisomerase IV, A subunit [Escherichia coli O157:H7 str. EC4115] gi|209920494|ref|YP_002294578.1| DNA topoisomerase IV subunit A [Escherichia coli SE11] gi|217326967|ref|ZP_03443050.1| DNA topoisomerase IV, A subunit [Escherichia coli O157:H7 str. TW14588] gi|218555592|ref|YP_002388505.1| DNA topoisomerase IV subunit A [Escherichia coli IAI1] gi|218696728|ref|YP_002404395.1| DNA topoisomerase IV subunit A [Escherichia coli 55989] gi|218701791|ref|YP_002409420.1| DNA topoisomerase IV subunit A [Escherichia coli IAI39] gi|218706646|ref|YP_002414165.1| DNA topoisomerase IV subunit A [Escherichia coli UMN026] gi|238902132|ref|YP_002927928.1| DNA topoisomerase IV, subunit A [Escherichia coli BW2952] gi|254794973|ref|YP_003079810.1| DNA topoisomerase IV subunit A [Escherichia coli O157:H7 str. TW14359] gi|256019060|ref|ZP_05432925.1| DNA topoisomerase IV subunit A [Shigella sp. D9] gi|256024399|ref|ZP_05438264.1| DNA topoisomerase IV subunit A [Escherichia sp. 4_1_40B] gi|260845776|ref|YP_003223554.1| DNA topoisomerase IV subunit A [Escherichia coli O103:H2 str. 12009] gi|260869776|ref|YP_003236178.1| DNA topoisomerase IV subunit A [Escherichia coli O111:H- str. 11128] gi|261228033|ref|ZP_05942314.1| DNA topoisomerase IV, subunit A [Escherichia coli O157:H7 str. FRIK2000] gi|261254889|ref|ZP_05947422.1| DNA topoisomerase IV subunit A [Escherichia coli O157:H7 str. FRIK966] gi|291284399|ref|YP_003501217.1| DNA topoisomerase 4 subunit A [Escherichia coli O55:H7 str. CB9615] gi|293406635|ref|ZP_06650561.1| DNA topoisomerase IV subunit A [Escherichia coli FVEC1412] gi|293416461|ref|ZP_06659100.1| DNA topoisomerase IV [Escherichia coli B185] gi|293449364|ref|ZP_06663785.1| DNA topoisomerase IV [Escherichia coli B088] gi|298382374|ref|ZP_06991971.1| DNA topoisomerase 4 subunit A [Escherichia coli FVEC1302] gi|300821604|ref|ZP_07101750.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 119-7] gi|300901399|ref|ZP_07119485.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 198-1] gi|300916873|ref|ZP_07133576.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 115-1] gi|300923678|ref|ZP_07139705.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 182-1] gi|300931905|ref|ZP_07147202.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 187-1] gi|301325632|ref|ZP_07219096.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 78-1] gi|307139708|ref|ZP_07499064.1| DNA topoisomerase IV subunit A [Escherichia coli H736] gi|307310350|ref|ZP_07589998.1| DNA topoisomerase IV, A subunit [Escherichia coli W] gi|312972719|ref|ZP_07786892.1| DNA topoisomerase IV, A subunit [Escherichia coli 1827-70] gi|331643719|ref|ZP_08344850.1| DNA topoisomerase IV, A subunit [Escherichia coli H736] gi|331654626|ref|ZP_08355626.1| DNA topoisomerase IV, A subunit [Escherichia coli M718] gi|331669960|ref|ZP_08370805.1| DNA topoisomerase IV, A subunit [Escherichia coli TA271] gi|331679092|ref|ZP_08379764.1| DNA topoisomerase IV, A subunit [Escherichia coli H591] gi|332280161|ref|ZP_08392574.1| topoisomerase IV subunit [Shigella sp. D9] gi|84028840|sp|P0AFI3|PARC_ECO57 RecName: Full=DNA topoisomerase 4 subunit A; AltName: Full=Topoisomerase IV subunit A gi|84028841|sp|P0AFI2|PARC_ECOLI RecName: Full=DNA topoisomerase 4 subunit A; AltName: Full=Topoisomerase IV subunit A gi|84028842|sp|P0AFI4|PARC_SHIFL RecName: Full=DNA topoisomerase 4 subunit A; AltName: Full=Topoisomerase IV subunit A gi|12517588|gb|AAG58155.1|AE005531_8 DNA topoisomerase IV subunit A [Escherichia coli O157:H7 str. EDL933] gi|882549|gb|AAA69187.1| topoisomerase IV subunit [Escherichia coli str. K-12 substr. MG1655] gi|1789396|gb|AAC76055.1| DNA topoisomerase IV, subunit A [Escherichia coli str. K-12 substr. MG1655] gi|13363375|dbj|BAB37326.1| DNA topoisomerase IV subunit A [Escherichia coli O157:H7 str. Sakai] gi|24053483|gb|AAN44541.1| DNA topoisomerase IV subunit A [Shigella flexneri 2a str. 301] gi|30042629|gb|AAP18353.1| DNA topoisomerase IV subunit A [Shigella flexneri 2a str. 2457T] gi|85675822|dbj|BAE77075.1| DNA topoisomerase IV, subunit A [Escherichia coli str. K12 substr. W3110] gi|110616464|gb|ABF05131.1| DNA topoisomerase IV subunit A [Shigella flexneri 5 str. 8401] gi|157068175|gb|ABV07430.1| DNA topoisomerase IV, A subunit [Escherichia coli HS] gi|157080591|gb|ABV20299.1| DNA topoisomerase IV, A subunit [Escherichia coli E24377A] gi|169753655|gb|ACA76354.1| DNA topoisomerase IV, A subunit [Escherichia coli ATCC 8739] gi|169890397|gb|ACB04104.1| DNA topoisomerase IV, subunit A [Escherichia coli str. K-12 substr. DH10B] gi|187770984|gb|EDU34828.1| DNA topoisomerase IV, A subunit [Escherichia coli O157:H7 str. EC4196] gi|188017906|gb|EDU56028.1| DNA topoisomerase IV, A subunit [Escherichia coli O157:H7 str. EC4113] gi|188489834|gb|EDU64937.1| DNA topoisomerase IV, A subunit [Escherichia coli 53638] gi|189000605|gb|EDU69591.1| DNA topoisomerase IV, A subunit [Escherichia coli O157:H7 str. EC4076] gi|189358753|gb|EDU77172.1| DNA topoisomerase IV, A subunit [Escherichia coli O157:H7 str. EC4401] gi|189363711|gb|EDU82130.1| DNA topoisomerase IV, A subunit [Escherichia coli O157:H7 str. EC4486] gi|189369288|gb|EDU87704.1| DNA topoisomerase IV, A subunit [Escherichia coli O157:H7 str. EC4501] gi|189373963|gb|EDU92379.1| DNA topoisomerase IV, A subunit [Escherichia coli O157:H7 str. EC869] gi|189379712|gb|EDU98128.1| DNA topoisomerase IV, A subunit [Escherichia coli O157:H7 str. EC508] gi|192932249|gb|EDV84847.1| DNA topoisomerase IV, A subunit [Escherichia coli E22] gi|192959227|gb|EDV89662.1| DNA topoisomerase IV, A subunit [Escherichia coli E110019] gi|194415812|gb|EDX32079.1| DNA topoisomerase IV, A subunit [Escherichia coli B171] gi|194419954|gb|EDX36032.1| DNA topoisomerase IV, A subunit [Shigella dysenteriae 1012] gi|194424249|gb|EDX40236.1| DNA topoisomerase IV, A subunit [Escherichia coli 101-1] gi|208725898|gb|EDZ75499.1| DNA topoisomerase IV, A subunit [Escherichia coli O157:H7 str. EC4206] gi|208733494|gb|EDZ82181.1| DNA topoisomerase IV, A subunit [Escherichia coli O157:H7 str. EC4045] gi|208738621|gb|EDZ86303.1| DNA topoisomerase IV, A subunit [Escherichia coli O157:H7 str. EC4042] gi|209160389|gb|ACI37822.1| DNA topoisomerase IV, A subunit [Escherichia coli O157:H7 str. EC4115] gi|209759598|gb|ACI78111.1| DNA topoisomerase IV subunit A [Escherichia coli] gi|209759600|gb|ACI78112.1| DNA topoisomerase IV subunit A [Escherichia coli] gi|209759602|gb|ACI78113.1| DNA topoisomerase IV subunit A [Escherichia coli] gi|209759604|gb|ACI78114.1| DNA topoisomerase IV subunit A [Escherichia coli] gi|209759606|gb|ACI78115.1| DNA topoisomerase IV subunit A [Escherichia coli] gi|209913753|dbj|BAG78827.1| DNA topoisomerase IV subunit A [Escherichia coli SE11] gi|217319334|gb|EEC27759.1| DNA topoisomerase IV, A subunit [Escherichia coli O157:H7 str. TW14588] gi|218353460|emb|CAU99553.1| DNA topoisomerase IV, subunit A [Escherichia coli 55989] gi|218362360|emb|CAQ99983.1| DNA topoisomerase IV, subunit A [Escherichia coli IAI1] gi|218371777|emb|CAR19630.1| DNA topoisomerase IV, subunit A [Escherichia coli IAI39] gi|218433743|emb|CAR14660.1| DNA topoisomerase IV, subunit A [Escherichia coli UMN026] gi|238860846|gb|ACR62844.1| DNA topoisomerase IV, subunit A [Escherichia coli BW2952] gi|254594373|gb|ACT73734.1| DNA topoisomerase IV, subunit A [Escherichia coli O157:H7 str. TW14359] gi|257760923|dbj|BAI32420.1| DNA topoisomerase IV subunit A [Escherichia coli O103:H2 str. 12009] gi|257766132|dbj|BAI37627.1| DNA topoisomerase IV subunit A [Escherichia coli O111:H- str. 11128] gi|260447945|gb|ACX38367.1| DNA topoisomerase IV, A subunit [Escherichia coli DH1] gi|290764272|gb|ADD58233.1| DNA topoisomerase 4 subunit A [Escherichia coli O55:H7 str. CB9615] gi|291322454|gb|EFE61883.1| DNA topoisomerase IV [Escherichia coli B088] gi|291426641|gb|EFE99673.1| DNA topoisomerase IV subunit A [Escherichia coli FVEC1412] gi|291431817|gb|EFF04800.1| DNA topoisomerase IV [Escherichia coli B185] gi|298277514|gb|EFI19030.1| DNA topoisomerase 4 subunit A [Escherichia coli FVEC1302] gi|300355171|gb|EFJ71041.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 198-1] gi|300415843|gb|EFJ99153.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 115-1] gi|300420045|gb|EFK03356.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 182-1] gi|300460328|gb|EFK23821.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 187-1] gi|300525742|gb|EFK46811.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 119-7] gi|300847550|gb|EFK75310.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 78-1] gi|306909245|gb|EFN39740.1| DNA topoisomerase IV, A subunit [Escherichia coli W] gi|309703450|emb|CBJ02790.1| topoisomerase IV subunit A [Escherichia coli ETEC H10407] gi|310332661|gb|EFP99874.1| DNA topoisomerase IV, A subunit [Escherichia coli 1827-70] gi|313648136|gb|EFS12582.1| DNA topoisomerase IV, A subunit [Shigella flexneri 2a str. 2457T] gi|315062333|gb|ADT76660.1| DNA topoisomerase IV, subunit A [Escherichia coli W] gi|315137612|dbj|BAJ44771.1| DNA topoisomerase 4 subunit A [Escherichia coli DH1] gi|315615025|gb|EFU95663.1| DNA topoisomerase IV, A subunit [Escherichia coli 3431] gi|320180953|gb|EFW55874.1| Topoisomerase IV subunit A [Shigella boydii ATCC 9905] gi|320189372|gb|EFW64031.1| Topoisomerase IV subunit A [Escherichia coli O157:H7 str. EC1212] gi|320201934|gb|EFW76509.1| Topoisomerase IV subunit A [Escherichia coli EC4100B] gi|320640095|gb|EFX09667.1| DNA topoisomerase IV subunit A [Escherichia coli O157:H7 str. G5101] gi|320645392|gb|EFX14401.1| DNA topoisomerase IV subunit A [Escherichia coli O157:H- str. 493-89] gi|320650704|gb|EFX19161.1| DNA topoisomerase IV subunit A [Escherichia coli O157:H- str. H 2687] gi|320656399|gb|EFX24306.1| DNA topoisomerase IV subunit A [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320661771|gb|EFX29179.1| DNA topoisomerase IV subunit A [Escherichia coli O55:H7 str. USDA 5905] gi|320666923|gb|EFX33899.1| DNA topoisomerase IV subunit A [Escherichia coli O157:H7 str. LSU-61] gi|323163073|gb|EFZ48906.1| DNA topoisomerase IV, A subunit [Escherichia coli E128010] gi|323173738|gb|EFZ59367.1| DNA topoisomerase IV, A subunit [Escherichia coli LT-68] gi|323178726|gb|EFZ64302.1| DNA topoisomerase IV, A subunit [Escherichia coli 1180] gi|323377081|gb|ADX49349.1| DNA topoisomerase IV, A subunit [Escherichia coli KO11] gi|323935979|gb|EGB32274.1| DNA topoisomerase IV [Escherichia coli E1520] gi|323941882|gb|EGB38061.1| DNA topoisomerase IV [Escherichia coli E482] gi|323946736|gb|EGB42756.1| DNA topoisomerase IV [Escherichia coli H120] gi|323960933|gb|EGB56552.1| DNA topoisomerase IV [Escherichia coli H489] gi|323978906|gb|EGB73986.1| DNA topoisomerase IV [Escherichia coli TW10509] gi|324119632|gb|EGC13513.1| DNA topoisomerase IV [Escherichia coli E1167] gi|326337726|gb|EGD61560.1| Topoisomerase IV subunit A [Escherichia coli O157:H7 str. 1125] gi|331037190|gb|EGI09414.1| DNA topoisomerase IV, A subunit [Escherichia coli H736] gi|331048008|gb|EGI20085.1| DNA topoisomerase IV, A subunit [Escherichia coli M718] gi|331062873|gb|EGI34787.1| DNA topoisomerase IV, A subunit [Escherichia coli TA271] gi|331073157|gb|EGI44480.1| DNA topoisomerase IV, A subunit [Escherichia coli H591] gi|332087279|gb|EGI92411.1| DNA topoisomerase IV, A subunit [Shigella dysenteriae 155-74] gi|332102513|gb|EGJ05859.1| topoisomerase IV subunit [Shigella sp. D9] gi|332344976|gb|AEE58310.1| DNA topoisomerase IV, A subunit ParC [Escherichia coli UMNK88] gi|332752693|gb|EGJ83078.1| DNA topoisomerase IV, A subunit [Shigella flexneri K-671] gi|332753078|gb|EGJ83462.1| DNA topoisomerase IV, A subunit [Shigella flexneri 4343-70] gi|332754396|gb|EGJ84762.1| DNA topoisomerase IV, A subunit [Shigella flexneri 2747-71] gi|332765499|gb|EGJ95717.1| DNA topoisomerase IV, A subunit [Shigella flexneri 2930-71] gi|332999773|gb|EGK19357.1| DNA topoisomerase IV, A subunit [Shigella flexneri K-272] gi|333000251|gb|EGK19834.1| DNA topoisomerase IV, A subunit [Shigella flexneri K-218] gi|333014825|gb|EGK34170.1| DNA topoisomerase IV, A subunit [Shigella flexneri K-304] gi|333015641|gb|EGK34980.1| DNA topoisomerase IV, A subunit [Shigella flexneri K-227] Length = 752 Score = 516 bits (1330), Expect = e-144, Method: Compositional matrix adjust. Identities = 273/740 (36%), Positives = 446/740 (60%), Gaps = 29/740 (3%) Query: 23 RFALEE----RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78 R AL E YL Y++ I +RA+P + DG KPV RRI++AMSE+GL+ A FKKSAR Sbjct: 7 RLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSART 66 Query: 79 VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMT 137 VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S AA RYTE+R++ Sbjct: 67 VGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLS 126 Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197 + +EL+L + + D+ ++ EP + P++ PN+L NGT+GIAVGMAT IP HN++ Sbjct: 127 KYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLR 186 Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257 E+ +AA+ALID P+ ++++LL+ + GPD+PT I+ SR I + Y GRG R+RA W Sbjct: 187 EVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWK 246 Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFP 315 E+ +V++ +P+QV +R++E+IA + K++P+++D+RDES + R+V+ P Sbjct: 247 KED-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVP 301 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 ++ +D D +M +F +D+E + +N+N++ + P V L IL EWL RR+ + RR Sbjct: 302 RSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRR 361 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435 ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF LTE Q +AIL L+ Sbjct: 362 LNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAEAILELK 421 Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495 LR L KLEE +I+ E L E++++ +L S ++ N + E++ + + R Sbjct: 422 LRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDD-----R 476 Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555 R+ E A KA + M+ EP+T+V+S GW+RS K H +D L++K GDS K A+ Sbjct: 477 RSPLQEREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAV 535 Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615 + ++ + + G++Y + L S RG GE + + L + + KLL Sbjct: 536 KGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMESDDQKLL 595 Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--KLVVKVTGDHVAVVGENRKLLIF 673 + S G F+ ++++A R GK + + + +V++ D + + + ++L+F Sbjct: 596 MASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMF 655 Query: 674 SIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDL 726 + +P++S+GKG ++ + + G++ + LT I R +L Sbjct: 656 PVSDLPQLSKGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLT-IHVGKRKIKLRPEEL 714 Query: 727 LGWLGKRGGVGSLVPKGFPR 746 G+RG G+L+ +G R Sbjct: 715 QKVTGERGRRGTLM-RGLQR 733 >gi|89070809|ref|ZP_01158057.1| DNA topoisomerase IV subunit A [Oceanicola granulosus HTCC2516] gi|89043596|gb|EAR49804.1| DNA topoisomerase IV subunit A [Oceanicola granulosus HTCC2516] Length = 808 Score = 516 bits (1330), Expect = e-144, Method: Compositional matrix adjust. Identities = 246/413 (59%), Positives = 315/413 (76%), Gaps = 3/413 (0%) Query: 9 SNTLVEENVKA---VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65 S+T ENV LR A+ ERYL YALSTI RA+PD RDG KPVHRRI++AM E+ Sbjct: 2 SDTPDPENVSPDLIEPLRRAIGERYLTYALSTIMHRALPDARDGLKPVHRRILYAMRELR 61 Query: 66 LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125 L F+KSA+I G+V+G HPHGDQ++YD++ RLAQ F RYPL+ GQGNFGNIDGD+ Sbjct: 62 LSSAGGFRKSAKISGDVMGNYHPHGDQAIYDAMARLAQDFNVRYPLVDGQGNFGNIDGDN 121 Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185 AA RYTEARMT AE +L G++EDAVDFR Y+ +EPVV P+ FPNLLANG+SGIAV Sbjct: 122 PAASRYTEARMTAAAEALLDGLNEDAVDFRANYDGTLTEPVVLPAAFPNLLANGSSGIAV 181 Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245 GMAT+IP HN+ E+ +A L LI P+ E LL YI GPDFPTGG++VE RESI E+YR Sbjct: 182 GMATNIPPHNIDELVQACLHLIKTPDARDETLLNYIPGPDFPTGGVLVEPRESIAETYRT 241 Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305 GRG FR+R RW E++GRG W I+VTEIP+QVQKS+LIEK+AE+I K++P+L D+RDES Sbjct: 242 GRGAFRLRCRWHTEDLGRGQWQIIVTEIPFQVQKSKLIEKLAEVIQTKKVPILGDVRDES 301 Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365 AED+RIVL P+++++DPD+LM ++ SD+ETRF LNMNVL G P+V L +L+ +L Sbjct: 302 AEDIRIVLEPRSKNVDPDVLMGMLYRSSDLETRFSLNMNVLIDGLTPKVCSLKEVLRAFL 361 Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV 418 HRREVL RRS RM ID R+E+L+GL++A+L++D +I IIR +D PK ++ Sbjct: 362 DHRREVLLRRSRHRMAKIDHRLEVLEGLIVAFLHLDRVIDIIRYDDDPKAALM 414 Score = 333 bits (853), Expect = 8e-89, Method: Compositional matrix adjust. Identities = 159/330 (48%), Positives = 223/330 (67%), Gaps = 3/330 (0%) Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481 L++ Q +AILN+RLRSLR+LEE ++ +E D L+AE+ +++ LL +G QW +IA ++RE Sbjct: 480 GLSDVQAEAILNMRLRSLRRLEELELVAERDRLMAERAELEDLLETGSLQWAKIAEQLRE 539 Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS 541 V+ F G RRTTF E ++ L+ AMIE+EP+T+V S GWIR+L H +DL+ Sbjct: 540 VRAQFGAKAPGGARRTTFAEAGEVEEVPLE-AMIEREPVTIVCSQMGWIRALTGH-IDLN 597 Query: 542 -ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQ 600 L FK+GD + HA TTDR+LL ++G+ YTL A NL GRG GE ++L++DL + Sbjct: 598 RELKFKDGDGPRFIFHAETTDRLLLFGSNGRFYTLSAANLPGGRGMGEPVRLMVDLPNEA 657 Query: 601 DIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH 660 IV F++ +LLV SS G+ F+V E E++A TR GK L V + + ++ V+GDH Sbjct: 658 RIVDLFIHRPGGRLLVASSAGDGFVVAEEEVVAQTRAGKQVLNVRAPAQARICHPVSGDH 717 Query: 661 VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYN 720 +AVVGENRK+L+F +DQ+PEM RGKGVRLQ YKDGG+SD F + EGL+W D AGR+ Sbjct: 718 LAVVGENRKVLVFPLDQLPEMGRGKGVRLQKYKDGGLSDATTFTLAEGLSWRDPAGRTRT 777 Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750 ++L W G R G G + P+GFPR +F Sbjct: 778 VGPDELAEWQGNRAGSGRMAPRGFPRDNRF 807 >gi|113460743|ref|YP_718810.1| DNA topoisomerase IV subunit A [Haemophilus somnus 129PT] gi|112822786|gb|ABI24875.1| DNA topoisomerase IV subunit A [Haemophilus somnus 129PT] Length = 748 Score = 516 bits (1330), Expect = e-144, Method: Compositional matrix adjust. Identities = 278/742 (37%), Positives = 444/742 (59%), Gaps = 24/742 (3%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 E ++ + LR E+ YL Y++ I +RA+P + DG KPV RRII+AMSE+GL+ A +KK Sbjct: 8 EGIEQMPLRQFTEKAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAMSELGLNASAKYKK 67 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTE 133 SAR VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S AA RYTE Sbjct: 68 SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 127 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 +R+++++E++L + + V+++ ++ EP P++ P++L NGT+GIAVGMAT IP Sbjct: 128 SRLSKISEILLSELGQGTVNYQANFDGTLEEPQYLPARLPHILLNGTTGIAVGMATDIPP 187 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E+ A + L+DNP +++L+ + GPDFPT I+ +E I + Y GRG ++R Sbjct: 188 HNLNEVANATIMLLDNPNADLDQLMTALQGPDFPTEAEIISPKEEIRKIYEQGRGSIKMR 247 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRI 311 A W E + I++T +P+Q S+++ +IAE + K++P++EDIRDE+ + +R+ Sbjct: 248 AVWKKE-----NGEIIITALPHQSSPSKIVAQIAEQMQNKKLPMVEDIRDEADHENPIRL 302 Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371 V+ P++ +D D LM +F +D+E + +NMN++ + P V L IL EWL RR+ Sbjct: 303 VIVPRSNRVDTDALMAHLFATTDLEKSYRVNMNMIGLDNKPAVKNLVQILTEWLTFRRQT 362 Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431 + RR +R+ + R+ IL GLLIA+LNIDEII IIRNEDKPK ++++RF+LT+ Q +AI Sbjct: 363 VTRRLQYRLDKVLARLHILDGLLIAFLNIDEIIEIIRNEDKPKEILIARFNLTDEQAEAI 422 Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491 LNLRLR L KLEE ++++E +NL E+ ++ +LNS + N I EI++ + F+ Sbjct: 423 LNLRLRHLAKLEEQELQAEKNNLAKERNSLEQILNSEIRLNNLIKKEIQQDAKTFASP-- 480 Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551 R + E + A KA + M EPIT+++S GW+R K H ++ AL +K GD+ Sbjct: 481 ---RLSPLVERAEA-KAISETDMTPSEPITIILSEMGWVRCAKGHDINARALSYKTGDNY 536 Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611 + ++ + + G++YTL +L S R GE + + L I + + Sbjct: 537 LTHACGKSNQPVVFIDSTGRSYTLDPLSLPSARSQGEPLTGKLTLPSGATIEHLLIENEN 596 Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--KLVVK-VTGDHVAVVGENR 668 LL+ S G FI + ++++ + GK + + + LV++ T VA+ NR Sbjct: 597 QSLLMASDAGYGFICKFEDLVSRNKAGKAVISLPENANVLPPLVLQNSTALLVALTSMNR 656 Query: 669 KLLIFSIDQIPEMSRGKGVRLQSYKDGGISD-----VICFKICEGLTWIDSAG-RSYNRS 722 +L+F + +PE+S+GKG ++ + V F I E + + AG R Sbjct: 657 -MLVFPVADLPELSKGKGNKIIHIPAANAKERSELLVKLFLISEKTSLVFHAGKRKVTLK 715 Query: 723 ENDLLGWLGKRGGVGSLVPKGF 744 D+ + +RG GS +P+G Sbjct: 716 PEDIQKFRAERGRKGSPLPRGL 737 >gi|323183606|gb|EFZ69003.1| DNA topoisomerase IV, A subunit [Escherichia coli 1357] Length = 749 Score = 516 bits (1330), Expect = e-144, Method: Compositional matrix adjust. Identities = 273/740 (36%), Positives = 446/740 (60%), Gaps = 29/740 (3%) Query: 23 RFALEE----RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78 R AL E YL Y++ I +RA+P + DG KPV RRI++AMSE+GL+ A FKKSAR Sbjct: 4 RLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSART 63 Query: 79 VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMT 137 VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S AA RYTE+R++ Sbjct: 64 VGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLS 123 Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197 + +EL+L + + D+ ++ EP + P++ PN+L NGT+GIAVGMAT IP HN++ Sbjct: 124 KYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLR 183 Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257 E+ +AA+ALID P+ ++++LL+ + GPD+PT I+ SR I + Y GRG R+RA W Sbjct: 184 EVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWK 243 Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFP 315 E+ +V++ +P+QV +R++E+IA + K++P+++D+RDES + R+V+ P Sbjct: 244 KED-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVP 298 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 ++ +D D +M +F +D+E + +N+N++ + P V L IL EWL RR+ + RR Sbjct: 299 RSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRR 358 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435 ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF LTE Q +AIL L+ Sbjct: 359 LNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAEAILELK 418 Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495 LR L KLEE +I+ E L E++++ +L S ++ N + E++ + + R Sbjct: 419 LRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDD-----R 473 Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555 R+ E A KA + M+ EP+T+V+S GW+RS K H +D L++K GDS K A+ Sbjct: 474 RSPLQEREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAV 532 Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615 + ++ + + G++Y + L S RG GE + + L + + KLL Sbjct: 533 KGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMESDDQKLL 592 Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--KLVVKVTGDHVAVVGENRKLLIF 673 + S G F+ ++++A R GK + + + +V++ D + + + ++L+F Sbjct: 593 MASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMF 652 Query: 674 SIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDL 726 + +P++S+GKG ++ + + G++ + LT I R +L Sbjct: 653 PVSDLPQLSKGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLT-IHVGKRKIKLRPEEL 711 Query: 727 LGWLGKRGGVGSLVPKGFPR 746 G+RG G+L+ +G R Sbjct: 712 QKVTGERGRRGTLM-RGLQR 730 >gi|205354091|ref|YP_002227892.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207858433|ref|YP_002245084.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|205273872|emb|CAR38872.1| topoisomerase IV subunit A [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|206710236|emb|CAR34593.1| topoisomerase IV subunit A [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] Length = 752 Score = 516 bits (1329), Expect = e-144, Method: Compositional matrix adjust. Identities = 273/740 (36%), Positives = 447/740 (60%), Gaps = 29/740 (3%) Query: 23 RFALEE----RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78 R AL E YL Y++ I +RA+P + DG KPV RRI++AMSE+GL+ A FKKSAR Sbjct: 7 RLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKFKKSART 66 Query: 79 VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMT 137 VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S AA RYTE+R++ Sbjct: 67 VGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLS 126 Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197 + AEL+L + + D+ ++ EP + P++ PN+L NGT+GIAVGMAT IP HN++ Sbjct: 127 KYAELLLSELGQGTADWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLR 186 Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257 E+ +AA+ LI+ P+ ++++LL+ + GPD+PT I+ R I + Y GRG R+RA W Sbjct: 187 EVAKAAITLIEQPKTTLDQLLDIVQGPDYPTEAEIITPRAEIRKIYENGRGSVRMRAVWT 246 Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFP 315 E+ +V+T +P+QV ++++E+IA + K++P+++D+RDES + R+V+ P Sbjct: 247 KED-----GAVVITALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVP 301 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 ++ +D + +M +F +D+E + +N+N++ + P V L IL EWLA RR+ + RR Sbjct: 302 RSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEWLAFRRDTVRRR 361 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435 ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF ++E Q +AIL L+ Sbjct: 362 LNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGISETQAEAILELK 421 Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495 LR L KLEE +I+ E D L E++++ +L S ++ + E++ + + R Sbjct: 422 LRHLAKLEEMKIRGEQDELEKERDQLQGILASERKMNTLLKKELQADSDAYGDD-----R 476 Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555 R+ E A KA + M+ EP+T+V+S GW+RS K H +D L++K GDS K A+ Sbjct: 477 RSPLREREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAV 535 Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615 + ++ + T G++Y + L S RG GE + + L + + KLL Sbjct: 536 KGKSNQPVVFIDTTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVEHMLMEGDDQKLL 595 Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--KLVVKVTGDHVAVVGENRKLLIF 673 + S G F+ ++++A R GK + + + LV++ D + + + ++L+F Sbjct: 596 MASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPLVIEDEHDMLLAITQAGRMLMF 655 Query: 674 SIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDL 726 +D +P++S+GKG ++ + D G++ + LT I R +L Sbjct: 656 PVDSLPQLSKGKGNKIINIPSAEAAKGDDGLAHLYVLPPQSTLT-IHVGKRKIKLRPEEL 714 Query: 727 LGWLGKRGGVGSLVPKGFPR 746 +G+RG G+L+ +G R Sbjct: 715 QKVVGERGRRGTLM-RGLQR 733 >gi|304396840|ref|ZP_07378720.1| DNA topoisomerase IV, A subunit [Pantoea sp. aB] gi|304355636|gb|EFM20003.1| DNA topoisomerase IV, A subunit [Pantoea sp. aB] Length = 757 Score = 516 bits (1329), Expect = e-144, Method: Compositional matrix adjust. Identities = 276/745 (37%), Positives = 448/745 (60%), Gaps = 24/745 (3%) Query: 12 LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71 L ++ + ++L E+ YL Y++ I +RA+P + DG KPV RRII+AMSE+GL+ A Sbjct: 4 LTQDGAERLALHTFTEDAYLKYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLNASAK 63 Query: 72 FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYR 130 FKKSAR VG+V+GK HPHGD + Y+++V +AQPF RY L+ GQGN+G D S AA R Sbjct: 64 FKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPDDPKSFAAMR 123 Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190 YTE+R+++ AEL+L + + V+F+ ++ EP + P++ PN+L NGT+GIAVGMAT Sbjct: 124 YTESRLSKYAELLLGELGQGTVEFQPNFDGTLQEPKILPARLPNILLNGTTGIAVGMATD 183 Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250 IP HN++E+ +AA+ALID P+ ++E LL+ + GPD+PT I+ R+ I + Y+ GRG Sbjct: 184 IPPHNLREVAQAAIALIDAPKTTLEALLDIVQGPDYPTEAEIITPRDEIRKMYQTGRGSI 243 Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-- 308 R RA W EE G V+T +P+QV +R++E+IA + K++P++ED+RDES + Sbjct: 244 RQRAVWKKEE-GEA----VITALPHQVSGARVLEQIANQMRNKKLPMVEDLRDESDHENP 298 Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368 R+V+ P++ +D D +M +F +D+E + +N+N++ + P V L IL EWL R Sbjct: 299 TRLVIVPRSNRVDLDQIMNHLFATTDLEKSYRVNLNMIGLDNRPAVKNLHEILTEWLVFR 358 Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQV 428 R+ + RR ++R+ + RR+ IL+GLL+A+LNIDE+I IIR ED+PKPV++SRF ++E Q Sbjct: 359 RDTVKRRLNYRLDRVLRRLHILEGLLVAFLNIDEVIDIIRTEDEPKPVLMSRFGISETQA 418 Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488 ++IL L+LR L KLEE +I++E +L E++++ + L S ++ + KE+ + Sbjct: 419 ESILELKLRHLAKLEEVKIRAEQADLEKERDQLQATLASERKMNTLLK------KELQAD 472 Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548 S G R + KA + ++ EP+T+V+S GW+RS K H +D + L +K G Sbjct: 473 SASYGDDRRSPLREREEAKALSETELVPSEPVTIVLSQMGWVRSAKGHDIDPAGLSYKAG 532 Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608 DS A + + + + G++YTL +L S RG GE + + + + Sbjct: 533 DSYLAAARGKSNQPVAFIDSTGRSYTLDPTSLPSARGQGEPLTGKLTPPPGAVVEQVLME 592 Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--KLVVKVTGDHVAVVGE 666 +LL+ S G FI S++++ R GK L + ++ + V D + + + Sbjct: 593 PDDQRLLMASDAGYGFICTFSDLVSRNRAGKALLALPENARVMTPMAVHHEDDMLLAITQ 652 Query: 667 NRKLLIFSIDQIPEMSRGKG---VRLQSYKDGGISDVICFKIC----EGLTWIDSAGRSY 719 ++L+F + ++P+MS+GKG + + S + D + + + +T + Sbjct: 653 AGRMLMFPVGELPQMSKGKGNKIISIPSAEAAAGQDKLAWLMILPPGSAITLHVGKRKML 712 Query: 720 NRSENDLLGWLGKRGGVGSLVPKGF 744 RSE +L + RG G+L+P+G Sbjct: 713 LRSE-ELQKFRADRGRRGTLLPRGL 736 >gi|200388568|ref|ZP_03215180.1| DNA topoisomerase IV, A subunit [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|199605666|gb|EDZ04211.1| DNA topoisomerase IV, A subunit [Salmonella enterica subsp. enterica serovar Virchow str. SL491] Length = 752 Score = 516 bits (1329), Expect = e-144, Method: Compositional matrix adjust. Identities = 273/740 (36%), Positives = 447/740 (60%), Gaps = 29/740 (3%) Query: 23 RFALEE----RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78 R AL E YL Y++ I +RA+P + DG KPV RRI++AMSE+GL+ A FKKSAR Sbjct: 7 RLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKFKKSART 66 Query: 79 VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMT 137 VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S AA RYTE+R++ Sbjct: 67 VGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLS 126 Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197 + AEL+L + + D+ ++ EP + P++ PN+L NGT+GIAVGMAT IP HN++ Sbjct: 127 KYAELLLSELGQGTADWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLR 186 Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257 E+ +AA+ LI+ P+ ++++LL+ + GPD+PT I+ R I + Y GRG R+RA W Sbjct: 187 EVAKAAITLIEQPKTTLDQLLDIVQGPDYPTEAEIITPRAEIRKIYENGRGSVRMRAVWT 246 Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFP 315 E+ +V++ +P+QV ++++E+IA + K++P+++D+RDES + R+V+ P Sbjct: 247 KED-----GAVVISALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVP 301 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 ++ +D + +M +F +D+E + +N+N++ + P V L IL EWLA RR+ + RR Sbjct: 302 RSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEWLAFRRDTVCRR 361 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435 ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF ++E Q +AIL L+ Sbjct: 362 LNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGISETQAEAILELK 421 Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495 LR L KLEE +I+ E D L E++++ +L S ++ + E++ + + R Sbjct: 422 LRHLAKLEEMKIRGEQDELEKERDQLQGILASERKMNTLLKKELQADADAYGDD-----R 476 Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555 R+ E A KA + M+ EP+T+V+S GW+RS K H +D L++K GDS K A+ Sbjct: 477 RSPLREREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAV 535 Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615 + ++ + T G++Y + L S RG GE + + L + + KLL Sbjct: 536 KGKSNQPVVFIDTTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVEHMLMEGDDQKLL 595 Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--KLVVKVTGDHVAVVGENRKLLIF 673 + S G F+ ++++A R GK + + + LV+K D + + + ++L+F Sbjct: 596 MASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPLVIKDEHDMLLAITQAGRMLMF 655 Query: 674 SIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDL 726 +D +P++S+GKG ++ + D G++ + LT I R +L Sbjct: 656 PVDSLPQLSKGKGNKIINIPSAEAAKGDDGLAHLYVLPPQSTLT-IHVGKRKIKLRPEEL 714 Query: 727 LGWLGKRGGVGSLVPKGFPR 746 +G+RG G+L+ +G R Sbjct: 715 QKVVGERGRRGTLM-RGLQR 733 >gi|91212438|ref|YP_542424.1| DNA topoisomerase IV subunit A [Escherichia coli UTI89] gi|117625327|ref|YP_854531.1| DNA topoisomerase IV subunit A [Escherichia coli APEC O1] gi|191172499|ref|ZP_03034039.1| DNA topoisomerase IV, A subunit [Escherichia coli F11] gi|215488349|ref|YP_002330780.1| DNA topoisomerase IV subunit A [Escherichia coli O127:H6 str. E2348/69] gi|218560098|ref|YP_002393011.1| DNA topoisomerase IV subunit A [Escherichia coli S88] gi|218691318|ref|YP_002399530.1| DNA topoisomerase IV subunit A [Escherichia coli ED1a] gi|237706229|ref|ZP_04536710.1| topoisomerase IV subunit A [Escherichia sp. 3_2_53FAA] gi|300993206|ref|ZP_07180269.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 200-1] gi|306816635|ref|ZP_07450767.1| DNA topoisomerase IV subunit A [Escherichia coli NC101] gi|312968640|ref|ZP_07782849.1| DNA topoisomerase IV, A subunit [Escherichia coli 2362-75] gi|331659305|ref|ZP_08360247.1| DNA topoisomerase IV, A subunit [Escherichia coli TA206] gi|91074012|gb|ABE08893.1| topoisomerase IV subunit A [Escherichia coli UTI89] gi|115514451|gb|ABJ02526.1| DNA topoisomerase IV subunit A [Escherichia coli APEC O1] gi|190907167|gb|EDV66766.1| DNA topoisomerase IV, A subunit [Escherichia coli F11] gi|215266421|emb|CAS10859.1| DNA topoisomerase IV, subunit A [Escherichia coli O127:H6 str. E2348/69] gi|218366867|emb|CAR04637.1| DNA topoisomerase IV, subunit A [Escherichia coli S88] gi|218428882|emb|CAR09827.2| DNA topoisomerase IV, subunit A [Escherichia coli ED1a] gi|222034745|emb|CAP77487.1| DNA topoisomerase 4 subunit A [Escherichia coli LF82] gi|226899269|gb|EEH85528.1| topoisomerase IV subunit A [Escherichia sp. 3_2_53FAA] gi|294491010|gb|ADE89766.1| DNA topoisomerase IV, A subunit [Escherichia coli IHE3034] gi|300305132|gb|EFJ59652.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 200-1] gi|305850200|gb|EFM50659.1| DNA topoisomerase IV subunit A [Escherichia coli NC101] gi|307625374|gb|ADN69678.1| DNA topoisomerase IV subunit A [Escherichia coli UM146] gi|312286858|gb|EFR14769.1| DNA topoisomerase IV, A subunit [Escherichia coli 2362-75] gi|312947583|gb|ADR28410.1| DNA topoisomerase IV subunit A [Escherichia coli O83:H1 str. NRG 857C] gi|315288741|gb|EFU48139.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 110-3] gi|315297721|gb|EFU56998.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 16-3] gi|320195173|gb|EFW69802.1| Topoisomerase IV subunit A [Escherichia coli WV_060327] gi|323951454|gb|EGB47329.1| DNA topoisomerase IV [Escherichia coli H252] gi|323957826|gb|EGB53540.1| DNA topoisomerase IV [Escherichia coli H263] gi|324011927|gb|EGB81146.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 60-1] gi|331053887|gb|EGI25916.1| DNA topoisomerase IV, A subunit [Escherichia coli TA206] Length = 752 Score = 516 bits (1329), Expect = e-144, Method: Compositional matrix adjust. Identities = 273/740 (36%), Positives = 446/740 (60%), Gaps = 29/740 (3%) Query: 23 RFALEE----RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78 R AL E YL Y++ I +RA+P + DG KPV RRI++AMSE+GL+ A FKKSAR Sbjct: 7 RLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSART 66 Query: 79 VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMT 137 VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S AA RYTE+R++ Sbjct: 67 VGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLS 126 Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197 + +EL+L + + D+ ++ EP + P++ PN+L NGT+GIAVGMAT IP HN++ Sbjct: 127 KYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLR 186 Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257 E+ +AA+ALID P+ ++++LL+ + GPD+PT I+ SR I + Y GRG R+RA W Sbjct: 187 EVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWK 246 Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFP 315 E+ +V++ +P+QV +R++E+IA + K++P+++D+RDES + R+V+ P Sbjct: 247 KED-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVP 301 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 ++ +D D +M +F +D+E + +N+N++ + P V L IL EWL RR+ + RR Sbjct: 302 RSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRR 361 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435 ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF LTE Q +AIL L+ Sbjct: 362 LNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAEAILELK 421 Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495 LR L KLEE +I+ E L E++++ +L S ++ N + E++ + + R Sbjct: 422 LRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDE-----R 476 Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555 R+ E A KA + M+ EP+T+V+S GW+RS K H +D L++K GDS K A+ Sbjct: 477 RSPLQEREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAV 535 Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615 + ++ + + G++Y + L S RG GE + + L + + KLL Sbjct: 536 KGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMESDDQKLL 595 Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--KLVVKVTGDHVAVVGENRKLLIF 673 + S G F+ ++++A R GK + + + +V++ D + + + ++L+F Sbjct: 596 MASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMF 655 Query: 674 SIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDL 726 + +P++S+GKG ++ + + G++ + LT I R +L Sbjct: 656 PVSDLPQLSKGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLT-IHVGKRKIKLRPEEL 714 Query: 727 LGWLGKRGGVGSLVPKGFPR 746 G+RG G+L+ +G R Sbjct: 715 QKVAGERGRRGTLM-RGLQR 733 >gi|325926739|ref|ZP_08188048.1| DNA topoisomerase IV subunit A [Xanthomonas perforans 91-118] gi|325542875|gb|EGD14329.1| DNA topoisomerase IV subunit A [Xanthomonas perforans 91-118] Length = 747 Score = 516 bits (1329), Expect = e-144, Method: Compositional matrix adjust. Identities = 279/735 (37%), Positives = 433/735 (58%), Gaps = 21/735 (2%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 + LR E YL Y++ + +RA+P L DG KPV RRI++AMSE+GL+ A KKSAR V Sbjct: 15 LPLREYAERAYLDYSMYVVLDRALPFLGDGLKPVQRRIVYAMSELGLNAAAKPKKSARTV 74 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQ 138 G+VIGK HPHGD + Y++LV +AQPF RYPLI GQGNFG+ D S AA RYTE+++T Sbjct: 75 GDVIGKYHPHGDSACYEALVLMAQPFSYRYPLIEGQGNFGSTDDPKSFAAMRYTESKLTP 134 Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198 +AE++L + + D+ ++ EP P++ P+LL NGT+GIAVGMAT +P HN+ E Sbjct: 135 IAEVLLGELGQGTTDWAPNFDGTLEEPTWLPARLPHLLLNGTTGIAVGMATDVPPHNLNE 194 Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258 I A L L+D+P+ S+ L E+++GPD+PT I+ + Y G G R RA + Sbjct: 195 IVSALLRLLDDPDASVADLCEHVLGPDYPTTAEIITPAADLRNIYETGHGSVRARATYKK 254 Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES--AEDVRIVLFPK 316 E IV+ +PYQV S++IE+IA+ + AK++P LEDIRDES VR+VL P+ Sbjct: 255 EHAN-----IVIDALPYQVSPSKVIEQIAQQMRAKKLPWLEDIRDESDHTSPVRVVLVPR 309 Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376 + +D + LM +F+ +D+E + +N+NV+ + PQV L +L EWL+ R + + RR Sbjct: 310 SNRVDAEQLMGHLFVTTDLERSYRVNLNVIGLDGRPQVKNLKHLLSEWLSFRSDTVTRRL 369 Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRL 436 + R+Q ++RR+ +L+GLLIA+LN+DE+I I+R+ED+PKPV++SRF+L+E Q + IL +L Sbjct: 370 NHRLQKVERRLHLLEGLLIAFLNLDEVIRIVRSEDEPKPVLISRFALSEEQAEYILETKL 429 Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496 R L +LEE +I+ E + L E+ +I ++L S + I E+ + F + RR Sbjct: 430 RQLARLEEMKIRGEQEALAKERAQIMAILESKTKLKKLIKDELTADAKKFGDA-----RR 484 Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALH 556 + + A +A + M+ EP+TVV+S +GW+R+ K H VD + + ++EGD L A+ Sbjct: 485 SPLVQRGAA-QAIDETEMVASEPMTVVLSEKGWVRAAKGHEVDPAGMSYREGDGLLAAVR 543 Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLV 616 + +T ++ L +DG+AY+ L S RG+GE + D+ + ++ Sbjct: 544 SRSTHQVAFLDSDGRAYSTAVHTLPSARGNGEPLTGRFSPASGAAFQVMASADNATRFVL 603 Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---DHVAVVGENRKLLIF 673 SS G F+ + + GK L +++ + +V+ D + V LL Sbjct: 604 ASSHGYGFVTRFENLTGRNKAGKAMLNLTTGSHVLTPAQVSNPQTDRIVAVTSAGNLLAV 663 Query: 674 SIDQIPEMSRGKG---VRLQSYKDGGISDVICFKICEGLT-WIDSAGRSYNRSENDLLGW 729 +PE+ +GKG + + K G V + G T + S R+ + S DL + Sbjct: 664 PATDVPELDKGKGNKIIEIPKAKLGTERVVAVVAVAPGNTLLVRSGARTMSLSFKDLDTY 723 Query: 730 LGKRGGVGSLVPKGF 744 +G R GSL+P+G+ Sbjct: 724 VGARASRGSLLPRGW 738 >gi|253991000|ref|YP_003042356.1| DNA topoisomerase IV subunit A [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253782450|emb|CAQ85614.1| topoisomerase IV subunit A [Photorhabdus asymbiotica] Length = 748 Score = 516 bits (1329), Expect = e-144, Method: Compositional matrix adjust. Identities = 275/746 (36%), Positives = 450/746 (60%), Gaps = 24/746 (3%) Query: 12 LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71 + + V+ + L E YL Y++ I +RA+P + DG KPV RRI++AMSE+GL+ A Sbjct: 4 ITHDGVERLPLHSFTETAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNNTAK 63 Query: 72 FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYR 130 FKKSAR VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S AA R Sbjct: 64 FKKSARTVGDVLGKYHPHGDGACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMR 123 Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190 YTE+R+++ AEL+L + VD+ ++ EP + P++ PN+L NGT+GIAVGMAT Sbjct: 124 YTESRLSKYAELLLTELGHGTVDWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATD 183 Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250 IP HN +E+ A + L+D P+ ++++L+E++ GPD+PT I+ S E I + Y+ GRG Sbjct: 184 IPPHNAREVSNALVTLLDKPQSTLDELMEHVKGPDYPTEAEIITSHEDIRKIYKNGRGSV 243 Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-- 308 R+RA W E+ +V+T +P+QV ++++E+IA + AK++P+++D+RDES + Sbjct: 244 RMRAVWSKED-----GNVVITALPHQVSGAKILEQIASQMRAKKLPMVDDLRDESDHENP 298 Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368 R+V+ P+ +D + +M +F +D+E + +N+N++ + P V L IL EWL R Sbjct: 299 TRLVIVPRTNRVDVEQVMNHLFATTDLEKSYRVNLNMIGLDNRPTVKGLVEILSEWLVFR 358 Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQV 428 RE + +R + R++ + +R+ +L+GLLIA+LNIDE+I IIR+ED+PKPV+++RF L+E Q Sbjct: 359 RETVRKRLNHRLEKVLKRLHVLEGLLIAFLNIDEVIDIIRSEDEPKPVLMARFGLSETQT 418 Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488 +AIL L+LR L KLEE +I+ E D L E++K+ ++L S +++ N + KEI + Sbjct: 419 EAILELKLRHLAKLEEMKIRGEQDELAKERDKLQAILGS-ERKLNTLLK-----KEIIAD 472 Query: 489 STDLG-RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKE 547 + G RR+ E A KA + + EP+T+V+S GW+RS K H +D + L++K Sbjct: 473 AATYGDERRSPMRERDEA-KAMSEHDITPSEPVTIVLSEMGWVRSAKGHDIDPAGLNYKA 531 Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV 607 GDS + A + ++ + T G++Y+L +L S RG GE + + L + + Sbjct: 532 GDSFRGAARGKSNQPVVFIDTTGRSYSLDPRDLPSARGQGEPLTGKLTLPAGATVEHVLM 591 Query: 608 YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---DHVAVV 664 K L+ S G FI S+++A R GK + + + +++ D + + Sbjct: 592 ASDEQKFLMASDAGYGFICTFSDLVAKNRAGKALITLPENANVMTPLEINNEQDDMLLAI 651 Query: 665 GENRKLLIFSIDQIPEMSRGKGVRLQSYK----DGGISDVICFKICEGLTWIDSAGRSYN 720 ++L+F + +P++S+GKG ++ S + D +S + +T + Sbjct: 652 TSTGRMLMFPVADLPQLSKGKGNKIISVQAASGDELLSGLFILPPQSSITLYFGKRKLTL 711 Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPR 746 R E DL + +RG G+ +P+G R Sbjct: 712 RPE-DLQKFRAERGRKGTSLPRGLQR 736 >gi|323188545|gb|EFZ73830.1| DNA topoisomerase IV, A subunit [Escherichia coli RN587/1] Length = 752 Score = 516 bits (1329), Expect = e-144, Method: Compositional matrix adjust. Identities = 273/740 (36%), Positives = 445/740 (60%), Gaps = 29/740 (3%) Query: 23 RFALEE----RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78 R AL E YL Y++ I +RA+P + DG KPV RRI++AMSE+GL+ A FKKSAR Sbjct: 7 RLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSART 66 Query: 79 VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMT 137 VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S AA RYTE+R++ Sbjct: 67 VGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLS 126 Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197 + +EL+L + + D+ ++ EP + P++ PN+L NGT+GIAVGMAT IP HN++ Sbjct: 127 KYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLR 186 Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257 E+ +A +ALID P+ ++++LL+ + GPD+PT I+ SR I + Y GRG R+RA W Sbjct: 187 EVAQAVIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWK 246 Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFP 315 E+ +V++ +P+QV +R++E+IA + K++P+++D+RDES + R+V+ P Sbjct: 247 KED-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVP 301 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 ++ +D D +M +F +D+E + +N+N++ + P V L IL EWL RR+ + RR Sbjct: 302 RSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRR 361 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435 ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF LTE Q +AIL L+ Sbjct: 362 LNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAEAILELK 421 Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495 LR L KLEE +I+ E L E++++ +L S ++ N + E++ + + R Sbjct: 422 LRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDE-----R 476 Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555 R+ E A KA + M+ EP+T+V+S GW+RS K H +D L++K GDS K A+ Sbjct: 477 RSPLHEREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAV 535 Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615 + ++ + + G++Y + L S RG GE + + L + + KLL Sbjct: 536 KGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMESDDQKLL 595 Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--KLVVKVTGDHVAVVGENRKLLIF 673 + S G F+ S+++A R GK + + + +V++ D + + + ++L+F Sbjct: 596 MASDAGYGFVCTFSDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMF 655 Query: 674 SIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDL 726 + +P++S+GKG ++ + + G++ + LT I R +L Sbjct: 656 PVSDLPQLSKGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLT-IHVGKRKIKLRPEEL 714 Query: 727 LGWLGKRGGVGSLVPKGFPR 746 G+RG G+L+ +G R Sbjct: 715 QKVTGERGRRGTLM-RGLQR 733 >gi|311278061|ref|YP_003940292.1| DNA topoisomerase IV, A subunit [Enterobacter cloacae SCF1] gi|308747256|gb|ADO47008.1| DNA topoisomerase IV, A subunit [Enterobacter cloacae SCF1] Length = 752 Score = 516 bits (1329), Expect = e-144, Method: Compositional matrix adjust. Identities = 259/668 (38%), Positives = 423/668 (63%), Gaps = 16/668 (2%) Query: 27 EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86 E+ YL Y++ I +RA+P + DG KPV RRI++AMSE+GL A FKKSAR VG+V+GK Sbjct: 15 EKAYLDYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLSASAKFKKSARTVGDVLGKY 74 Query: 87 HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQVAELILQ 145 HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S AA RYTE+R+++ A+++L Sbjct: 75 HPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKYADVLLG 134 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 + + VD+ ++ EP + P++ PN+L NGT+GIAVGMAT IP HNV+E+ +AA+A Sbjct: 135 ELGQGTVDWVPNFDGTMQEPRMLPARLPNILLNGTTGIAVGMATDIPPHNVREVAQAAIA 194 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265 LID P +++++L+ + GPD+PT I+ SR I + Y+ GRG R+RA W E+ Sbjct: 195 LIDKPATTLDEVLDIVQGPDYPTEAEIITSRAEIRKIYQSGRGSVRMRAVWTKED----- 249 Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFPKNRSLDPD 323 +V+ +P+QV +R++E+IA + K++P+++D+RDES + R+V+ P++ +D + Sbjct: 250 GAVVINALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRVDME 309 Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383 +M +F +D+E + +N+N++ + P V L IL EWLA RR+ + RR ++R++ + Sbjct: 310 QVMNHLFATTDLEKSYRINLNMIGLDGRPSVKNLLEILTEWLAFRRDTVRRRLNYRLEKV 369 Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLE 443 RR+ IL+GLL+A+LNIDE+I IIR ED+PKPV++SRF+++E Q +AIL L+LR L KLE Sbjct: 370 LRRLHILEGLLVAFLNIDEVIHIIRTEDEPKPVLMSRFAISETQAEAILELKLRHLAKLE 429 Query: 444 EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVS 503 E +I+ E ++L E+++I ++L S ++ N + E++ E F RR+ E Sbjct: 430 EMKIRGEQNDLEKERDQIQAILASERKMNNLLKKELQADAEAFGDD-----RRSPLHERE 484 Query: 504 RADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRI 563 A KA + M+ EP+T+V+S W+RS K H +D L +K GDS K ++ + + Sbjct: 485 EA-KAMSEHDMLPSEPVTIVLSQMSWVRSAKGHDIDAKGLSYKAGDSWKASVKGKSNQPV 543 Query: 564 LLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNA 623 + + + G++Y + L S RG GE + + L + + KLL+ S G Sbjct: 544 VFIDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMEGDEQKLLMASDAGYG 603 Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKM--KLVVKVTGDHVAVVGENRKLLIFSIDQIPEM 681 F+ S+++A R GK + + ++ LV++ D + + ++L+F + +P++ Sbjct: 604 FVCTFSDLVARNRAGKALITLPENARVMPPLVIEDESDMLLAITSAGRMLMFPVSDLPQL 663 Query: 682 SRGKGVRL 689 S+GKG ++ Sbjct: 664 SKGKGNKI 671 >gi|78047053|ref|YP_363228.1| DNA topoisomerase IV subunit A [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78035483|emb|CAJ23128.1| topoisomerase IV subunit A [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 747 Score = 516 bits (1329), Expect = e-144, Method: Compositional matrix adjust. Identities = 278/735 (37%), Positives = 434/735 (59%), Gaps = 21/735 (2%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 + LR E YL Y++ + +RA+P L DG KPV RRI++AMSE+GL+ A KKSAR V Sbjct: 15 LPLREYAERAYLDYSMYVVLDRALPFLGDGLKPVQRRIVYAMSELGLNAAAKPKKSARTV 74 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQ 138 G+VIGK HPHGD + Y++LV +AQPF RYPLI GQGNFG+ D S AA RYTE+++T Sbjct: 75 GDVIGKYHPHGDSACYEALVLMAQPFSYRYPLIEGQGNFGSTDDPKSFAAMRYTESKLTP 134 Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198 +AE++L + + D+ ++ EP P++ P+LL NGT+GIAVGMAT +P HN+ E Sbjct: 135 IAEVLLGELGQGTTDWAPNFDGTLEEPTWLPARLPHLLLNGTTGIAVGMATDVPPHNLNE 194 Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258 I A L L+D+P+ ++ +L E+++GPD+PT I+ + Y G G R RA + Sbjct: 195 IVSALLRLLDDPDATVAQLCEHVLGPDYPTTAEIITPAADLRNIYETGHGSVRARATYKK 254 Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES--AEDVRIVLFPK 316 E IV+ +PYQV S++IE+IA+ + AK++P LEDIRDES VR+VL P+ Sbjct: 255 EHAN-----IVIDALPYQVSPSKVIEQIAQQMRAKKLPWLEDIRDESDHTSPVRVVLVPR 309 Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376 + +D + LM +F+ +D+E + +N+NV+ + PQV L +L EWL+ R + + RR Sbjct: 310 SNRVDAEQLMGHLFVTTDLERSYRVNLNVIGLDGRPQVKNLKHLLSEWLSFRSDTVTRRL 369 Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRL 436 + R+Q ++RR+ +L+GLLIA+LN+DE+I I+R+ED+PKPV++SRF+L+E Q + IL +L Sbjct: 370 NHRLQKVERRLHLLEGLLIAFLNLDEVIRIVRSEDEPKPVLISRFALSEEQAEYILETKL 429 Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496 R L +LEE +I+ E + L E+ +I ++L S + I E+ + F + RR Sbjct: 430 RQLARLEEMKIRGEQEALAKERAQIIAILESKTKLKKLIKDELTADAKKFGDA-----RR 484 Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALH 556 + + A +A + M+ EP+TVV+S +GW+R+ K H VD + + ++EGD L A+ Sbjct: 485 SPLVQRGAA-QAIDETEMVASEPMTVVLSEKGWVRAAKGHEVDPAGMSYREGDGLLAAVR 543 Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLV 616 + +T ++ L +DG+AY+ L S RG+GE + D+ + ++ Sbjct: 544 SRSTHQVAFLDSDGRAYSTAVHTLPSARGNGEPLTGRFSPASGAAFQVMASADNATRFVL 603 Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---DHVAVVGENRKLLIF 673 SS G F+ + + GK L +++ + +V+ D + V LL Sbjct: 604 ASSHGYGFVTRFENLTGRNKAGKAMLNLTTGSHVLTPAQVSNPQTDRIVAVTSAGNLLAV 663 Query: 674 SIDQIPEMSRGKG---VRLQSYKDGGISDVICFKICEGLT-WIDSAGRSYNRSENDLLGW 729 +PE+ +GKG + + K G V + G T + S R+ + S DL + Sbjct: 664 PATDVPELDKGKGNKIIEIPKAKLGTERVVAVVAVAPGNTLLVRSGARTMSLSFKDLDTY 723 Query: 730 LGKRGGVGSLVPKGF 744 +G R GSL+P+G+ Sbjct: 724 VGARASRGSLLPRGW 738 >gi|224584974|ref|YP_002638773.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|224469502|gb|ACN47332.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] Length = 760 Score = 516 bits (1329), Expect = e-144, Method: Compositional matrix adjust. Identities = 271/747 (36%), Positives = 451/747 (60%), Gaps = 25/747 (3%) Query: 12 LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71 L+ + + ++L E YL Y++ I +RA+P + DG KPV RRI++AMSE+GL+ A Sbjct: 8 LMSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAK 67 Query: 72 FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYR 130 FKKSAR VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S AA R Sbjct: 68 FKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMR 127 Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190 YTE+R+++ AEL+L + + D+ ++ EP + P++ PN+L NGT+GIAVGMAT Sbjct: 128 YTESRLSKYAELLLSELGQGTADWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATD 187 Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250 IP HN++E+ +AA+ LI+ P+ ++++LL+ + GPD+PT I+ R I + Y GRG Sbjct: 188 IPPHNLREVAKAAITLIEQPKTTLDQLLDIVQGPDYPTEAEIITPRAEIRKIYENGRGSV 247 Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-- 308 R+RA W E+ +V++ +P+QV ++++E+IA + K++P+++D+RDES + Sbjct: 248 RMRAVWTKED-----GAVVISALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENP 302 Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368 R+V+ P++ +D + +M +F +D+E + +N+N++ + P V L IL EWLA R Sbjct: 303 TRLVIVPRSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEWLAFR 362 Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQV 428 R+ + RR ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF ++E Q Sbjct: 363 RDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGISETQA 422 Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488 +AIL L+LR L KLEE +I+ E D L E++++ +L S ++ + E++ + + Sbjct: 423 EAILELKLRHLAKLEEMKIRGEQDELEKERDQLQGILASERKMNTLLKKELQADADAYGD 482 Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548 RR+ E A KA + M+ EP+T+V+S GW+RS K H +D L++K G Sbjct: 483 D-----RRSPLREREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAG 536 Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608 DS K A+ + ++ + T G++Y + L S RG GE + + L + + Sbjct: 537 DSFKAAVKGKSNQPVVFIDTTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVEHMLME 596 Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--KLVVKVTGDHVAVVGE 666 KLL+ S G F+ ++++A R GK + + + LV++ D + + + Sbjct: 597 GDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPLVIEDEHDMLLAITQ 656 Query: 667 NRKLLIFSIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTWIDSAGRSY 719 ++L+F +D +P++S+GKG ++ + D G++ + LT I R Sbjct: 657 AGRMLMFPVDSLPQLSKGKGNKIINIPSAEAAKGDDGLAHLYVLPPQSTLT-IHVGKRKI 715 Query: 720 NRSENDLLGWLGKRGGVGSLVPKGFPR 746 +L +G+RG G+L+ +G R Sbjct: 716 KLRPEELQKVVGERGRRGTLM-RGLQR 741 >gi|254244148|ref|ZP_04937470.1| topoisomerase IV subunit A [Pseudomonas aeruginosa 2192] gi|126197526|gb|EAZ61589.1| topoisomerase IV subunit A [Pseudomonas aeruginosa 2192] Length = 754 Score = 516 bits (1328), Expect = e-144, Method: Compositional matrix adjust. Identities = 282/761 (37%), Positives = 452/761 (59%), Gaps = 29/761 (3%) Query: 6 ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65 +S S L E V+ SL E+ YL Y++ I +RA+P + DG KPV RRI++AMSE+G Sbjct: 1 MSESLDLSLEGVERRSLAEFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIVYAMSELG 60 Query: 66 LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124 LD + KKSAR VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D Sbjct: 61 LDADSKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPK 120 Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184 S AA RYTEAR+++ +E++L + + VD+ ++ EP V P++ PNLL NGT+GIA Sbjct: 121 SFAAMRYTEARLSRYSEVLLSELGQGTVDWVPNFDGTLDEPAVLPARLPNLLLNGTTGIA 180 Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244 VGMAT +P HN++E+ A + L+D P ++ +L E++ GPDFPT I+ R + + Y Sbjct: 181 VGMATDVPPHNLREVASACVRLLDQPGATVAELCEHVPGPDFPTEAEIITPRADLQKVYE 240 Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304 GRG R+RA + VE+ IV+ +P+QV S+++E+IA + AK++P++ D+RDE Sbjct: 241 TGRGSVRMRAVYRVED-----GDIVIQALPHQVSGSKVLEQIAGQMQAKKLPMVADLRDE 295 Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362 S + RIV+ P++ +D + LM +F +D+ET + +N+N++ + PQV L +L Sbjct: 296 SDHENPTRIVIIPRSNRVDVEELMTHLFATTDLETSYRVNLNIIGLDGKPQVKDLRQLLS 355 Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422 EWL R + RR FR+ ++RR+ +L GLLIA+LN+DE+I IIR ED+PK V++ RF Sbjct: 356 EWLQFRIGTVRRRLQFRLDKVERRLHLLDGLLIAFLNLDEVIHIIRTEDQPKAVLMERFE 415 Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482 L+E Q D IL+ RLR L +LEE +I+ E + LL E++++ +LL S + + E+ + Sbjct: 416 LSEVQADYILDTRLRQLARLEEMKIRGEQEELLKEQKRLQTLLGSEAKLKKLVREELIKD 475 Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQA-MIEKEPITVVISNRGWIRSLKSHSVDLS 541 E + RR+ V+RA+ L + ++ EP+TVV+S +GW+R K H +D + Sbjct: 476 AETYGDD-----RRSPI--VARAEARALSETELMPTEPVTVVLSEKGWVRCAKGHDIDAA 528 Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD 601 L +K GD K A + + + + G++Y+LPA +L S RG GE + + Sbjct: 529 GLSYKAGDGFKAAAPGRSNQYAVFIDSTGRSYSLPAHSLPSARGQGEPLSGRLTPPPGAS 588 Query: 602 IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTG 658 + D ++ S G F+V+ ++ A + GK L + + + + V V Sbjct: 589 FECVLLPDDDALFVIASDAGYGFVVKGEDLQAKNKAGKALLSLPNGSAVVAPRPVRDVEQ 648 Query: 659 DHVAVVGENRKLLIFSIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTW 711 D +A V +LL+F + +P++ +GKG ++ + ++ ++D+ + G T Sbjct: 649 DWLAAVTTEGRLLLFKVSDLPQLGKGKGNKIIGIPGERVASREEYLTDLAV--LPAGATL 706 Query: 712 IDSAG-RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751 + AG R+ + +DL + G+RG G+ +P+GF R L Sbjct: 707 VLQAGKRTLSLKGDDLEHYKGERGRRGNKLPRGFQRVDSLL 747 >gi|332998728|gb|EGK18324.1| DNA topoisomerase IV, A subunit [Shigella flexneri VA-6] Length = 752 Score = 516 bits (1328), Expect = e-144, Method: Compositional matrix adjust. Identities = 273/740 (36%), Positives = 446/740 (60%), Gaps = 29/740 (3%) Query: 23 RFALEE----RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78 R AL E YL Y++ I +RA+P + DG KPV RRI++AMSE+GL+ A FKKSAR Sbjct: 7 RLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNARAKFKKSART 66 Query: 79 VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMT 137 VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S AA RYTE+R++ Sbjct: 67 VGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLS 126 Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197 + +EL+L + + D+ ++ EP + P++ PN+L NGT+GIAVGMAT IP HN++ Sbjct: 127 KYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLR 186 Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257 E+ +AA+ALID P+ ++++LL+ + GPD+PT I+ SR I + Y GRG R+RA W Sbjct: 187 EVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWK 246 Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFP 315 E+ +V++ +P+QV +R++E+IA + K++P+++D+RDES + R+V+ P Sbjct: 247 KED-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVP 301 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 ++ +D D +M +F +D+E + +N+N++ + P V L IL EWL RR+ + RR Sbjct: 302 RSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRR 361 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435 ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF LTE Q +AIL L+ Sbjct: 362 LNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAEAILELK 421 Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495 LR L KLEE +I+ E L E++++ +L S ++ N + E++ + + R Sbjct: 422 LRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDD-----R 476 Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555 R+ E A KA + M+ EP+T+V+S GW+RS K H +D L++K GDS K A+ Sbjct: 477 RSPLQEREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAV 535 Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615 + ++ + + G++Y + L S RG GE + + L + + KLL Sbjct: 536 KGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMESDDQKLL 595 Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--KLVVKVTGDHVAVVGENRKLLIF 673 + S G F+ ++++A R GK + + + +V++ D + + + ++L+F Sbjct: 596 MASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMF 655 Query: 674 SIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDL 726 + +P++S+GKG ++ + + G++ + LT I R +L Sbjct: 656 PVSDLPQLSKGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLT-IHVGKRKIKLRPEEL 714 Query: 727 LGWLGKRGGVGSLVPKGFPR 746 G+RG G+L+ +G R Sbjct: 715 QKVTGERGRRGTLM-RGLQR 733 >gi|82545280|ref|YP_409227.1| DNA topoisomerase IV subunit A [Shigella boydii Sb227] gi|81246691|gb|ABB67399.1| DNA topoisomerase IV subunit A [Shigella boydii Sb227] gi|320176211|gb|EFW51275.1| Topoisomerase IV subunit A [Shigella dysenteriae CDC 74-1112] gi|332092194|gb|EGI97272.1| DNA topoisomerase IV, A subunit [Shigella boydii 3594-74] Length = 752 Score = 516 bits (1328), Expect = e-144, Method: Compositional matrix adjust. Identities = 273/740 (36%), Positives = 446/740 (60%), Gaps = 29/740 (3%) Query: 23 RFALEE----RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78 R AL E YL Y++ I +RA+P + DG KPV RRI++AMSE+GL+ A FKKSAR Sbjct: 7 RLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSART 66 Query: 79 VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMT 137 VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S AA RYTE+R++ Sbjct: 67 VGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLS 126 Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197 + +EL+L + + D+ ++ EP + P++ PN+L NGT+GIAVGMAT IP HN++ Sbjct: 127 KYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLR 186 Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257 E+ +AA+ALID P+ ++++LL+ + GPD+PT I+ SR I + Y GRG R+RA W Sbjct: 187 EVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWK 246 Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFP 315 E+ +V++ +P+QV +R++E+IA + K++P+++D+RDES + R+V+ P Sbjct: 247 KED-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVP 301 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 ++ +D D +M +F +D+E + +N+N++ + P V L IL EWL RR+ + RR Sbjct: 302 RSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRR 361 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435 ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF LTE Q +AIL L+ Sbjct: 362 LNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAEAILELK 421 Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495 LR L KLEE +I+ E L E++++ +L S ++ N + E++ + + R Sbjct: 422 LRHLAKLEEMKIRGEQSELEKERDQLQGILVSERKMNNLLKKELQADAQAYGDD-----R 476 Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555 R+ E A KA + M+ EP+T+V+S GW+RS K H +D L++K GDS K A+ Sbjct: 477 RSPLQEREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAV 535 Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615 + ++ + + G++Y + L S RG GE + + L + + KLL Sbjct: 536 KGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMESDDQKLL 595 Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--KLVVKVTGDHVAVVGENRKLLIF 673 + S G F+ ++++A R GK + + + +V++ D + + + ++L+F Sbjct: 596 MASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMF 655 Query: 674 SIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDL 726 + +P++S+GKG ++ + + G++ + LT I R +L Sbjct: 656 PVSDLPQLSKGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLT-IHVGKRKIKLRPEEL 714 Query: 727 LGWLGKRGGVGSLVPKGFPR 746 G+RG G+L+ +G R Sbjct: 715 QKVTGERGRRGTLM-RGLQR 733 >gi|88859083|ref|ZP_01133724.1| DNA topoisomerase IV, subunit A [Pseudoalteromonas tunicata D2] gi|88819309|gb|EAR29123.1| DNA topoisomerase IV, subunit A [Pseudoalteromonas tunicata D2] Length = 768 Score = 516 bits (1328), Expect = e-144, Method: Compositional matrix adjust. Identities = 276/753 (36%), Positives = 446/753 (59%), Gaps = 23/753 (3%) Query: 6 ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65 +S+ L + ++ +S+ E+ YL Y++ I +RA+P + DG KPV RRII+AMSE+G Sbjct: 1 MSDLEALSLQGIEQLSMGRFTEDAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELG 60 Query: 66 LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124 L A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D Sbjct: 61 LSSAAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAADDPK 120 Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184 S AA RYTEAR+++ AE++LQ + + D+ ++ EP+V P++ P++L NG +GIA Sbjct: 121 SFAAMRYTEARLSKFAEVLLQELGQGTCDWTPNFDGTMDEPLVLPARLPHILLNGITGIA 180 Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244 VGMAT IP HNV+E+ A L+DNP+ +E+LLE++ PD+PT I+ R I + Y+ Sbjct: 181 VGMATDIPPHNVREVASACSLLLDNPKAELEELLEHVQAPDYPTEAEIITPRSEIQKIYQ 240 Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304 G+G ++RA + EE G IV+T +P+Q +++E+IA + AK++P++ D+RDE Sbjct: 241 TGKGSIKMRAIY-TEEQGD----IVITALPHQCSGGKVLEQIAAQMQAKKLPMVADLRDE 295 Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362 S + RIV+ P++ + + LM +F +D+E + +N+N+L + PQV L IL Sbjct: 296 SDHENPTRIVIIPRSNRIKVEPLMAHLFATTDLEKSYRVNLNMLGLNGRPQVKDLKTILS 355 Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422 EWL RRE + RR +R+ I R+ IL+GLL A+LNIDE+I IIR+EDKPKPV++ RF Sbjct: 356 EWLIFRRETVRRRLQYRLDKILARLHILEGLLAAFLNIDEVIEIIRSEDKPKPVLMERFG 415 Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482 +T+ Q +AIL L+LR L KLEE++I+ E D L E++K++ L S ++ I EI+E Sbjct: 416 ITDIQAEAILELKLRHLAKLEEFKIRGEQDELSQERDKLELTLGSERRMSTLIKKEIQEA 475 Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542 E++ RR+ E + A KA ++ +I E +TVV+S +GW R K H +D +A Sbjct: 476 AELYGDD-----RRSPVIERAEA-KALSEKDLIPSEAVTVVLSEKGWARCAKGHDIDAAA 529 Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602 L ++ GD K + ++ L + G+A+ A +L + R GE + +++ + Sbjct: 530 LSYRAGDEFKALAKGRSNQPVVFLDSSGRAFCTDAHSLPTARSQGEPMTGRFNMSTGVNF 589 Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV---TGD 659 + + L+ S G F+ +++++ + GK + +S+ ++ +KV T D Sbjct: 590 EHVVMGELDAMFLMASDAGYGFVASFADLVSKNKNGKALVSLSTGAQLISPIKVNDITTD 649 Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGIS------DVICFKICEGLTWID 713 + + ++L+F + +P++ +GKG ++ S VI E + Sbjct: 650 NCLAISNEGRMLMFPLRDLPKLGKGKGNKIISIPSARAKTREEFVSVIAVVPKESAVTLH 709 Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746 + R DL +LG+RG G+ +P+G R Sbjct: 710 AGKRKLTLKAADLEHYLGERGRRGNKLPRGLQR 742 >gi|253772143|ref|YP_003034974.1| DNA topoisomerase IV subunit A [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254162968|ref|YP_003046076.1| DNA topoisomerase IV subunit A [Escherichia coli B str. REL606] gi|242378571|emb|CAQ33358.1| topoisomerase IV subunit A, subunit of dimer of topoisomerase IV subunit A and topoisomerase IV [Escherichia coli BL21(DE3)] gi|253323187|gb|ACT27789.1| DNA topoisomerase IV, A subunit [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253974869|gb|ACT40540.1| DNA topoisomerase IV subunit A [Escherichia coli B str. REL606] gi|253979025|gb|ACT44695.1| DNA topoisomerase IV subunit A [Escherichia coli BL21(DE3)] Length = 752 Score = 516 bits (1328), Expect = e-144, Method: Compositional matrix adjust. Identities = 273/740 (36%), Positives = 445/740 (60%), Gaps = 29/740 (3%) Query: 23 RFALEE----RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78 R AL E YL Y++ I +RA+P + DG KPV RRI++AMSE+GL+ A FKKSAR Sbjct: 7 RLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSART 66 Query: 79 VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMT 137 VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S AA RYTE+R++ Sbjct: 67 VGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLS 126 Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197 + +EL+L + + D+ ++ EP + P++ PN+L NGT+GIAVGMAT IP HN++ Sbjct: 127 KYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLR 186 Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257 E+ +AA+ALID P+ ++++LL+ + GPD+PT I+ SR I + Y GRG R+RA W Sbjct: 187 EVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWK 246 Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFP 315 E+ +V++ +P+QV +R++E+IA + K++P+++D+RDES + R+V+ P Sbjct: 247 KED-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVP 301 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 ++ +D D +M +F +D+E + +N+N++ + P V L IL EWL RR+ + RR Sbjct: 302 RSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRR 361 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435 ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF LTE Q +AIL L+ Sbjct: 362 LNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAEAILELK 421 Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495 LR L KLEE +I+ E L E++++ +L S ++ N + E++ + R Sbjct: 422 LRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAHAYGDD-----R 476 Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555 R+ E A KA + M+ EP+T+V+S GW+RS K H +D L++K GDS K A+ Sbjct: 477 RSPLQEREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAV 535 Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615 + ++ + + G++Y + L S RG GE + + L + + KLL Sbjct: 536 KGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMESDDQKLL 595 Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--KLVVKVTGDHVAVVGENRKLLIF 673 + S G F+ ++++A R GK + + + +V++ D + + + ++L+F Sbjct: 596 MASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMF 655 Query: 674 SIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDL 726 + +P++S+GKG ++ + + G++ + LT I R +L Sbjct: 656 PVSDLPQLSKGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLT-IHVGKRKIKLRPEEL 714 Query: 727 LGWLGKRGGVGSLVPKGFPR 746 G+RG G+L+ +G R Sbjct: 715 QKVTGERGRRGTLM-RGLQR 733 >gi|187731712|ref|YP_001881790.1| DNA topoisomerase IV subunit A [Shigella boydii CDC 3083-94] gi|187428704|gb|ACD07978.1| DNA topoisomerase IV, A subunit [Shigella boydii CDC 3083-94] Length = 752 Score = 516 bits (1328), Expect = e-144, Method: Compositional matrix adjust. Identities = 273/740 (36%), Positives = 446/740 (60%), Gaps = 29/740 (3%) Query: 23 RFALEE----RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78 R AL E YL Y++ I +RA+P + DG KPV RRI++AMSE+GL+ A FKKSAR Sbjct: 7 RLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSART 66 Query: 79 VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMT 137 VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S AA RYTE+R++ Sbjct: 67 VGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLS 126 Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197 + +EL+L + + D+ ++ EP + P++ PN+L NGT+GIAVGMAT IP HN++ Sbjct: 127 KYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLR 186 Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257 E+ +AA+ALID P+ ++++LL+ + GPD+PT I+ SR I + Y GRG R+RA W Sbjct: 187 EVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWK 246 Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFP 315 E+ +V++ +P+QV +R++E+IA + K++P+++D+RDES + R+V+ P Sbjct: 247 KED-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVP 301 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 ++ +D D +M +F +D+E + +N+N++ + P V L IL EWL RR+ + RR Sbjct: 302 RSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRR 361 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435 ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF LTE Q +AIL L+ Sbjct: 362 LNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAEAILELK 421 Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495 LR L KLEE +I+ E L E++++ +L S ++ N + E++ + + R Sbjct: 422 LRHLAKLEEMKIRGEQSELEKERDQLQGILVSERKMNNLLKKELQADAQAYGDD-----R 476 Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555 R+ E A KA + M+ EP+T+V+S GW+RS K H +D L++K GDS K A+ Sbjct: 477 RSPLQEREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAV 535 Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615 + ++ + + G++Y + L S RG GE + + L + + KLL Sbjct: 536 KGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMESDDQKLL 595 Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--KLVVKVTGDHVAVVGENRKLLIF 673 + S G F+ ++++A R GK + + + +V++ D + + + ++L+F Sbjct: 596 MASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMF 655 Query: 674 SIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDL 726 + +P++S+GKG ++ + + G++ + LT I R +L Sbjct: 656 PVSDLPQLSKGKGNKIINIPSAEAARGEDGLAQLYILPPQSTLT-IHVGKRKIKLRPEEL 714 Query: 727 LGWLGKRGGVGSLVPKGFPR 746 G+RG G+L+ +G R Sbjct: 715 QKVTGERGRRGTLM-RGLQR 733 >gi|325913975|ref|ZP_08176331.1| DNA topoisomerase IV subunit A [Xanthomonas vesicatoria ATCC 35937] gi|325539744|gb|EGD11384.1| DNA topoisomerase IV subunit A [Xanthomonas vesicatoria ATCC 35937] Length = 747 Score = 516 bits (1328), Expect = e-144, Method: Compositional matrix adjust. Identities = 279/735 (37%), Positives = 433/735 (58%), Gaps = 21/735 (2%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 + LR E YL Y++ + +RA+P L DG KPV RRII AMSE+GL+ A KKSAR V Sbjct: 15 LPLREYAERAYLDYSMYVVLDRALPFLGDGLKPVQRRIIFAMSELGLNAAAKPKKSARTV 74 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQ 138 G+VIGK HPHGD + Y++LV +AQPF RYPLI GQGNFG+ D S AA RYTE+++T Sbjct: 75 GDVIGKYHPHGDSACYEALVLMAQPFSYRYPLIEGQGNFGSTDDPKSFAAMRYTESKLTP 134 Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198 +AE++L + + D+ ++ EP P++ P+LL NGT+GIAVGMAT +P HN+ E Sbjct: 135 IAEVLLGEISQGTTDWAANFDGTLEEPTWLPARLPHLLLNGTTGIAVGMATDVPPHNLNE 194 Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258 I A L L+DNP+ ++ +L E+++GPD+PT I+ + Y G G R RA + Sbjct: 195 IVSALLRLLDNPDATVAELCEHVLGPDYPTTAEIITPAADLRNIYETGHGSVRARATYKK 254 Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES--AEDVRIVLFPK 316 E IV+ +PYQV S++IE+IA+ + AK++P LEDIRDES VR+VL P+ Sbjct: 255 EHAN-----IVIDALPYQVSPSKVIEQIAQQMRAKKLPWLEDIRDESDHTSPVRVVLVPR 309 Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376 + +D + LM +F+ +D+E + +N+NV+ + PQV L +L EWL R + + RR Sbjct: 310 SNRVDAEQLMGHLFVTTDLERSYRVNLNVIGLDGRPQVKNLRQLLSEWLTFRSDTVTRRL 369 Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRL 436 + R+Q ++RR+ +L+GLLIA+LN+DE+I I+R+ED+PKPV++SRF+L+E Q + IL +L Sbjct: 370 NHRLQKVERRLHLLEGLLIAFLNLDEVIRIVRSEDEPKPVLISRFALSEEQAEYILETKL 429 Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496 R L +LEE +I+ E + L E+ +I ++L S + I E+ + F + RR Sbjct: 430 RQLARLEEMKIRGEQEALAKERAQIMAILESKTKLKKLIKDELTADAKKFGDA-----RR 484 Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALH 556 + + A +A + M+ EP+TVV+S +GW+R+ K H VD + + +++GDSL A+ Sbjct: 485 SPLVQRGAA-QAIDETEMVASEPMTVVLSEKGWVRAAKGHEVDPAGMSYRDGDSLLAAVR 543 Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLV 616 + +T ++ L ++G+AY+ L S RG+GE + D+ + ++ Sbjct: 544 SRSTHQVAFLDSEGRAYSTAVHTLPSARGNGEPLTGRFSPGSGASFQVMASADNATRFVL 603 Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---DHVAVVGENRKLLIF 673 SS G F+ + + GK L +++ + +V+ D + V LL Sbjct: 604 ASSHGYGFVTRFENLTGRNKAGKAMLNLTAGSHVLSPAQVSNPQTDRIVAVTSAGNLLAV 663 Query: 674 SIDQIPEMSRGKG---VRLQSYKDGGISDVICFKICEGLT-WIDSAGRSYNRSENDLLGW 729 +PE+ +GKG + + K G V + G T + S R+ + S DL + Sbjct: 664 PATDVPELDKGKGNKIIEIPKAKLGTERVVAVVAVAPGNTLLVRSGARTMSLSFKDLDTY 723 Query: 730 LGKRGGVGSLVPKGF 744 +G R GSL+P+G+ Sbjct: 724 VGARASRGSLLPRGW 738 >gi|301017285|ref|ZP_07182049.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 69-1] gi|300400258|gb|EFJ83796.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 69-1] Length = 752 Score = 516 bits (1328), Expect = e-144, Method: Compositional matrix adjust. Identities = 273/740 (36%), Positives = 446/740 (60%), Gaps = 29/740 (3%) Query: 23 RFALEE----RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78 R AL E YL Y++ I +RA+P + DG KPV RRI++AMSE+GL+ A FKKSAR Sbjct: 7 RLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSART 66 Query: 79 VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMT 137 VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S AA RYTE+R++ Sbjct: 67 VGDVLGKYHPHGDIACYEAMVLMAQPFSYRYPLVDGQGNWGTPDDPKSFAAMRYTESRLS 126 Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197 + +EL+L + + D+ ++ EP + P++ PN+L NGT+GIAVGMAT IP HN++ Sbjct: 127 KYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLR 186 Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257 E+ +AA+ALID P+ ++++LL+ + GPD+PT I+ SR I + Y GRG R+RA W Sbjct: 187 EVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWK 246 Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFP 315 E+ +V++ +P+QV +R++E+IA + K++P+++D+RDES + R+V+ P Sbjct: 247 KED-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVP 301 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 ++ +D D +M +F +D+E + +N+N++ + P V L IL EWL RR+ + RR Sbjct: 302 RSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRR 361 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435 ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF LTE Q +AIL L+ Sbjct: 362 LNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAEAILELK 421 Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495 LR L KLEE +I+ E L E++++ +L S ++ N + E++ + + R Sbjct: 422 LRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDE-----R 476 Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555 R+ E A KA + M+ EP+T+V+S GW+RS K H +D L++K GDS K A+ Sbjct: 477 RSPLQEREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAV 535 Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615 + ++ + + G++Y + L S RG GE + + L + + KLL Sbjct: 536 KGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMESDDQKLL 595 Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--KLVVKVTGDHVAVVGENRKLLIF 673 + S G F+ ++++A R GK + + + +V++ D + + + ++L+F Sbjct: 596 MASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMF 655 Query: 674 SIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDL 726 + +P++S+GKG ++ + + G++ + LT I R +L Sbjct: 656 PVSDLPQLSKGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLT-IHVGKRKIKLRPEEL 714 Query: 727 LGWLGKRGGVGSLVPKGFPR 746 G+RG G+L+ +G R Sbjct: 715 QKVTGERGRRGTLM-RGLQR 733 >gi|254787812|ref|YP_003075241.1| DNA topoisomerase IV subunit A [Teredinibacter turnerae T7901] gi|237683816|gb|ACR11080.1| DNA topoisomerase IV, A subunit [Teredinibacter turnerae T7901] Length = 748 Score = 516 bits (1328), Expect = e-144, Method: Compositional matrix adjust. Identities = 280/749 (37%), Positives = 447/749 (59%), Gaps = 27/749 (3%) Query: 10 NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69 +TLV + + L+ E+ YL Y++ I +RA+P + DG KPV RRI++AMSE+GL Sbjct: 4 STLVPYADEQLPLKVFTEKAYLDYSMYVILDRALPHVGDGLKPVQRRIVYAMSELGLKAS 63 Query: 70 AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAA 128 A +KKSAR VG+VIGK HPHGD + Y+++V +AQPF RYPL+ GQGN+G+ D S AA Sbjct: 64 AKYKKSARTVGDVIGKFHPHGDSAAYEAMVLMAQPFSYRYPLVDGQGNWGSQDDPKSFAA 123 Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188 RYTEAR++ E++L + + V++ ++ EP V P++ P +L NGT+GIAVGMA Sbjct: 124 MRYTEARLSAFTEVLLSELAQGTVEWLPNFDGTLDEPKVLPARVPTVLLNGTTGIAVGMA 183 Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248 T IP HN++E+ +A + L++NP+ +L E+I GPD PT I+ + + + Y GRG Sbjct: 184 TDIPPHNLREVVDATIHLLENPDADNAQLCEFIPGPDMPTDAEIITPKADLQKVYETGRG 243 Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308 ++RA W EE IV+T +P+QV ++++E+IA + AK++P++ D+RDES + Sbjct: 244 SMKMRAVWRKEE-----GDIVITALPHQVSGAKILEQIAAQMQAKKLPMVADLRDESDHE 298 Query: 309 --VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366 +R+V+ P++ +D + +M +F +D+E + +N+N++ + P V L IL++WL+ Sbjct: 299 NPIRLVIVPRSNRIDQEAVMNHLFATTDLERSYRINLNMIGIDGRPGVKSLREILQDWLS 358 Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426 R + RR R+ ++RR+ +L GLLIA+LN+DE+I IIR ED PK ++ RF L+E+ Sbjct: 359 FRMVTVRRRLQHRLDWVERRLHLLDGLLIAFLNLDEVIHIIRTEDHPKQKLMERFELSED 418 Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486 Q + IL+ RLR L +LEE +I+ E L E++++ +L+S ++ I E+ V + F Sbjct: 419 QANYILDTRLRQLARLEEMKIRDEQQKLEKERDELQKILDSARRLKTLIKKELLAVVDEF 478 Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546 + RR+ E S A +A + +I EP+TVV+S +GWIRS K H +D SAL +K Sbjct: 479 GDA-----RRSPMVERSEA-QAFSETELISSEPVTVVLSEKGWIRSAKGHDIDPSALSYK 532 Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606 GDS ++A ++ LLL + G++Y LP L S RG GE + ++ Sbjct: 533 AGDSFRVAARGKSSQATLLLDSTGRSYALPTHTLPSARGQGEPVTGRLNPPSGAVFEGLL 592 Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVAV 663 + D T K+L+ S G FI S++ R GK L V + ++ +L+ +A Sbjct: 593 MGDDTQKVLLASDAGYGFIASLSDLYTKNRSGKAMLSVPAGGRVLAPQLLETTDASWLAA 652 Query: 664 VGENRKLLIFSIDQIPEMSRGKG--------VRLQSYKDGGISDVICFKICEGLTWIDSA 715 +LL F + ++PE++RGKG R+QS ++ ++ V+ + + + S Sbjct: 653 FSNEGRLLAFPVSELPELARGKGNKIINIPAARVQSREEFVVALVVFNE--KSTIKVFSG 710 Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGF 744 R DL +LG+RG G+ +P+GF Sbjct: 711 KRHLGLKYKDLEHYLGERGRRGNKLPRGF 739 >gi|168463617|ref|ZP_02697534.1| DNA topoisomerase IV, A subunit [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|195633491|gb|EDX51905.1| DNA topoisomerase IV, A subunit [Salmonella enterica subsp. enterica serovar Newport str. SL317] Length = 752 Score = 516 bits (1328), Expect = e-144, Method: Compositional matrix adjust. Identities = 273/740 (36%), Positives = 447/740 (60%), Gaps = 29/740 (3%) Query: 23 RFALEE----RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78 R AL E YL Y++ I +RA+P + DG KPV RRI++AMSE+GL+ A FKKSAR Sbjct: 7 RLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSART 66 Query: 79 VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMT 137 VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S AA RYTE+R++ Sbjct: 67 VGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLS 126 Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197 + AEL+L + + D+ ++ EP + P++ PN+L NGT+GIAVGMAT IP HN++ Sbjct: 127 KYAELLLSELGQGTADWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLR 186 Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257 E+ +AA+ LI+ P+ ++++LL+ + GPD+PT I+ R I + Y GRG R+RA W Sbjct: 187 EVAKAAITLIEQPKTTLDQLLDIVQGPDYPTEAEIITPRAEIRKIYENGRGSVRMRAVWT 246 Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFP 315 E+ +V+T +P+QV ++++E+IA + K++P+++D+RDES + R+V+ P Sbjct: 247 KED-----GAVVITALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVP 301 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 ++ +D + +M +F +D+E + +N+N++ + P V L IL EWLA RR+ + RR Sbjct: 302 RSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEWLAFRRDTVRRR 361 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435 ++ ++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF ++E Q +AIL L+ Sbjct: 362 LNYLLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGISETQAEAILELK 421 Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495 LR L KLEE +I+ E D L E++++ +L S ++ + E++ + + R Sbjct: 422 LRHLAKLEEMKIRGEQDELEKERDQLQGILASERKMNTLLKKELQADSDAYGDD-----R 476 Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555 R+ E A KA + M+ EP+T+V+S GW+RS K H +D L++K GDS K A+ Sbjct: 477 RSPLREREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAV 535 Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615 + ++ + T G++Y + L S RG GE + + L + + KLL Sbjct: 536 KGKSNQPVVFIDTTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVEHMLMEGDDQKLL 595 Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--KLVVKVTGDHVAVVGENRKLLIF 673 + S G F+ ++++A R GKT + + + LV++ D + + + ++L+F Sbjct: 596 MASDAGYGFVCTFNDLVARNRAGKTLITLPENAHVMPPLVIEDEHDMLLAITQAGRMLMF 655 Query: 674 SIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDL 726 +D +P++S+GKG ++ + D G++ + LT I R +L Sbjct: 656 PVDSLPQLSKGKGNKIINIPSAEAAKGDDGLAHLYVLPPQSTLT-IHVGKRKIKLRPEEL 714 Query: 727 LGWLGKRGGVGSLVPKGFPR 746 +G+RG G+L+ +G R Sbjct: 715 QKVVGERGRRGTLM-RGLQR 733 >gi|170723862|ref|YP_001751550.1| DNA topoisomerase IV subunit A [Pseudomonas putida W619] gi|169761865|gb|ACA75181.1| DNA topoisomerase IV, A subunit [Pseudomonas putida W619] Length = 752 Score = 515 bits (1327), Expect = e-144, Method: Compositional matrix adjust. Identities = 283/756 (37%), Positives = 455/756 (60%), Gaps = 29/756 (3%) Query: 6 ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65 +S+S L + V+ SL E+ YL Y++ I +RA+P + DG KPV RRI++AMSE+G Sbjct: 1 MSDSLELSLDGVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIVYAMSELG 60 Query: 66 LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124 LD A KKSAR VG+V+GK HPHGD + Y+++V +AQPF RY L+ GQGN+G D Sbjct: 61 LDADAKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPDDPK 120 Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184 S AA RYTEAR+++ +E++L + + VD+ ++ EP V P++ PN+L NGT+GIA Sbjct: 121 SFAAMRYTEARLSRYSEVLLSELGQGTVDWVPNFDGTLQEPAVLPARLPNILLNGTTGIA 180 Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244 VGMAT +P HN++E+ A + L+D P+ ++E+L E+I GPD+PT I+ R I++ Y Sbjct: 181 VGMATDVPPHNLREVASACVRLLDEPKATLEQLCEHIQGPDYPTEAEIITPRAEILKIYE 240 Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304 GRG R+RA + VE+ IVVT +P+QV ++++E+IA + AK++P++ D+RDE Sbjct: 241 SGRGSIRMRAVYRVED-----GDIVVTALPHQVSGAKVLEQIAAQMQAKKLPMVADLRDE 295 Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362 S + RIV+ P++ +D D LM+ +F +++E+ + +N+N++ + PQ+ L +L Sbjct: 296 SDHENPCRIVIIPRSNRVDADELMQHLFATTELESSYRVNVNIIGLDGRPQLKNLRALLL 355 Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422 EWL +R + RR R++ ++RR+ +L+GLL A+LN+DE+I IIR E+ PK +++RF Sbjct: 356 EWLQYRIGTVRRRLQHRLEKVERRLHLLEGLLTAFLNLDEVIHIIRTEEHPKQALIARFD 415 Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482 LTE Q D IL RLR L +LEE +I+ E D LL E+ K+ +LL S + + E+ + Sbjct: 416 LTEIQADYILETRLRQLARLEEMKIRGEQDELLKEQAKLLALLGSDAKLRKLVRSELIKD 475 Query: 483 KEIFSKSTDLGRRRTTFCEVSRAD-KATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS 541 E + RR+ V+RA+ KA + ++ EP+TVV+S +GW+R K H +D + Sbjct: 476 AETYGDD-----RRSPI--VARAEAKALSENELMPTEPVTVVLSEKGWVRCAKGHDIDAT 528 Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD 601 L +K GD K A + +L+ + G++Y++ A L S RG GE + + Sbjct: 529 GLSYKAGDGFKAAAAGRSNQFAVLIDSTGRSYSVAAHTLPSARGQGEPLTGRLTPPPGAT 588 Query: 602 IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTG 658 + D +V S G F+V+ ++ A + GK L + + K+ + V Sbjct: 589 FECVLLPDDDALYVVASDAGYGFVVKGEDLQAKNKAGKGLLSLPNGAKVISPRPVANREQ 648 Query: 659 DHVAVVGENRKLLIFSIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTW 711 D +A V +LL+F + +P++ +GKG ++ + ++ ++D+ I EG T Sbjct: 649 DWLAAVTTEGRLLVFKVADLPQLGKGKGNKIIGVPGDRVASREEYVTDLAV--IPEGATL 706 Query: 712 IDSAG-RSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746 + AG R+ + +DL + G+RG GS +P+GF R Sbjct: 707 VLQAGKRTLSLKPDDLEHYKGERGRRGSKLPRGFQR 742 >gi|322716173|gb|EFZ07744.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 749 Score = 515 bits (1327), Expect = e-144, Method: Compositional matrix adjust. Identities = 272/740 (36%), Positives = 447/740 (60%), Gaps = 29/740 (3%) Query: 23 RFALEE----RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78 R AL E YL Y++ I +RA+P + DG KPV RRI++AMSE+GL+ A FKKSAR Sbjct: 4 RLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSART 63 Query: 79 VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMT 137 VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S AA RYTE+R++ Sbjct: 64 VGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLS 123 Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197 + AEL+L + + D+ ++ EP + P++ PN+L NGT+GIAVGMAT IP HN++ Sbjct: 124 KYAELLLSELGQGTADWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLR 183 Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257 E+ +AA+ LI+ P+ ++++LL+ + GPD+PT I+ R I + Y GRG R+RA W Sbjct: 184 EVAKAAITLIEQPKTTLDQLLDIVQGPDYPTEAEIITPRAEIRKIYENGRGSVRMRAVWT 243 Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFP 315 E+ +V++ +P+QV ++++E+IA + K++P+++D+RDES + R+V+ P Sbjct: 244 KED-----GAVVISALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVP 298 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 ++ +D + +M +F +D+E + +N+N++ + P V L IL EWLA RR+ + RR Sbjct: 299 RSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEWLAFRRDTVRRR 358 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435 ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF ++E Q +AIL L+ Sbjct: 359 LNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGISETQAEAILELK 418 Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495 LR L KLEE +I+ E D L E++++ +L S ++ + E++ + + R Sbjct: 419 LRHLAKLEEMKIRGEQDELEKERDQLQGILASERKMNTLLKKELQADADAYGDD-----R 473 Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555 R+ E A KA + M+ EP+T+V+S GW+RS K H +D L++K GDS K A+ Sbjct: 474 RSPLREREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAV 532 Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615 + ++ + T G++Y + L S RG GE + + L + + KLL Sbjct: 533 KGKSNQPVVFIDTTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVEHMLMEGDDQKLL 592 Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--KLVVKVTGDHVAVVGENRKLLIF 673 + S G F+ ++++A R GK + + + LV++ D + + + ++L+F Sbjct: 593 MASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPLVIEDEHDMLLAITQAGRMLMF 652 Query: 674 SIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDL 726 +D +P++S+GKG ++ + D G++ + LT I R +L Sbjct: 653 PVDSLPQLSKGKGNKIINIPSAEAAKGDDGLAHLYVLPPQSTLT-IHVGKRKIKLRPEEL 711 Query: 727 LGWLGKRGGVGSLVPKGFPR 746 +G+RG G+L+ +G R Sbjct: 712 QKVVGERGRRGTLM-RGLQR 730 >gi|254038188|ref|ZP_04872246.1| DNA topoisomerase IV [Escherichia sp. 1_1_43] gi|300818784|ref|ZP_07098990.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 107-1] gi|226839812|gb|EEH71833.1| DNA topoisomerase IV [Escherichia sp. 1_1_43] gi|281602409|gb|ADA75393.1| DNA topoisomerase 4 subunit A [Shigella flexneri 2002017] gi|300528569|gb|EFK49631.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 107-1] Length = 752 Score = 515 bits (1327), Expect = e-144, Method: Compositional matrix adjust. Identities = 273/740 (36%), Positives = 446/740 (60%), Gaps = 29/740 (3%) Query: 23 RFALEE----RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78 R AL E YL Y++ I +RA+P + DG KPV RRI++AMSE+GL+ A FKKSAR Sbjct: 7 RLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSART 66 Query: 79 VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMT 137 VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S AA RYTE+R++ Sbjct: 67 VGDVLGKYHPHGDIACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLS 126 Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197 + +EL+L + + D+ ++ EP + P++ PN+L NGT+GIAVGMAT IP HN++ Sbjct: 127 KYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLR 186 Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257 E+ +AA+ALID P+ ++++LL+ + GPD+PT I+ SR I + Y GRG R+RA W Sbjct: 187 EVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWK 246 Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFP 315 E+ +V++ +P+QV +R++E+IA + K++P+++D+RDES + R+V+ P Sbjct: 247 KED-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVP 301 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 ++ +D D +M +F +D+E + +N+N++ + P V L IL EWL RR+ + RR Sbjct: 302 RSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRR 361 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435 ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF LTE Q +AIL L+ Sbjct: 362 LNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAEAILELK 421 Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495 LR L KLEE +I+ E L E++++ +L S ++ N + E++ + + R Sbjct: 422 LRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDD-----R 476 Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555 R+ E A KA + M+ EP+T+V+S GW+RS K H +D L++K GDS K A+ Sbjct: 477 RSPLQEREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAV 535 Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615 + ++ + + G++Y + L S RG GE + + L + + KLL Sbjct: 536 KGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMESDDQKLL 595 Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--KLVVKVTGDHVAVVGENRKLLIF 673 + S G F+ ++++A R GK + + + +V++ D + + + ++L+F Sbjct: 596 MASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMF 655 Query: 674 SIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDL 726 + +P++S+GKG ++ + + G++ + LT I R +L Sbjct: 656 PVSDLPQLSKGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLT-IHVGKRKIKLRPEEL 714 Query: 727 LGWLGKRGGVGSLVPKGFPR 746 G+RG G+L+ +G R Sbjct: 715 QKVTGERGRRGTLM-RGLQR 733 >gi|15600157|ref|NP_253651.1| DNA topoisomerase IV subunit A [Pseudomonas aeruginosa PAO1] gi|107104063|ref|ZP_01367981.1| hypothetical protein PaerPA_01005136 [Pseudomonas aeruginosa PACS2] gi|116054424|ref|YP_793432.1| DNA topoisomerase IV subunit A [Pseudomonas aeruginosa UCBPP-PA14] gi|218894059|ref|YP_002442928.1| DNA topoisomerase IV subunit A [Pseudomonas aeruginosa LESB58] gi|254238322|ref|ZP_04931645.1| topoisomerase IV subunit A [Pseudomonas aeruginosa C3719] gi|313109970|ref|ZP_07795896.1| topoisomerase IV subunit A [Pseudomonas aeruginosa 39016] gi|81622037|sp|Q9HUK1|PARC_PSEAE RecName: Full=DNA topoisomerase 4 subunit A; AltName: Full=Topoisomerase IV subunit A gi|9951246|gb|AAG08349.1|AE004909_5 topoisomerase IV subunit A [Pseudomonas aeruginosa PAO1] gi|115589645|gb|ABJ15660.1| topoisomerase IV subunit A [Pseudomonas aeruginosa UCBPP-PA14] gi|126170253|gb|EAZ55764.1| topoisomerase IV subunit A [Pseudomonas aeruginosa C3719] gi|218774287|emb|CAW30104.1| topoisomerase IV subunit A [Pseudomonas aeruginosa LESB58] gi|310882398|gb|EFQ40992.1| topoisomerase IV subunit A [Pseudomonas aeruginosa 39016] Length = 754 Score = 515 bits (1327), Expect = e-144, Method: Compositional matrix adjust. Identities = 282/761 (37%), Positives = 452/761 (59%), Gaps = 29/761 (3%) Query: 6 ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65 +S S L E V+ SL E+ YL Y++ I +RA+P + DG KPV RRI++AMSE+G Sbjct: 1 MSESLDLSLEGVERRSLAEFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIVYAMSELG 60 Query: 66 LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124 LD + KKSAR VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D Sbjct: 61 LDADSKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPK 120 Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184 S AA RYTEAR+++ +E++L + + VD+ ++ EP V P++ PNLL NGT+GIA Sbjct: 121 SFAAMRYTEARLSRYSEVLLSELGQGTVDWVPNFDGTLDEPAVLPARLPNLLLNGTTGIA 180 Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244 VGMAT +P HN++E+ A + L+D P ++ +L E++ GPDFPT I+ R + + Y Sbjct: 181 VGMATDVPPHNLREVASACVRLLDQPGATVAELCEHVPGPDFPTEAEIITPRADLQKVYE 240 Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304 GRG R+RA + VE+ IV+ +P+QV S+++E+IA + AK++P++ D+RDE Sbjct: 241 TGRGSVRMRAVYRVED-----GDIVIHALPHQVSGSKVLEQIAGQMQAKKLPMVADLRDE 295 Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362 S + RIV+ P++ +D + LM +F +D+ET + +N+N++ + PQV L +L Sbjct: 296 SDHENPTRIVIIPRSNRVDVEELMTHLFATTDLETSYRVNLNIIGLDGKPQVKDLRQLLS 355 Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422 EWL R + RR FR+ ++RR+ +L GLLIA+LN+DE+I IIR ED+PK V++ RF Sbjct: 356 EWLQFRIGTVRRRLQFRLDKVERRLHLLDGLLIAFLNLDEVIHIIRTEDQPKAVLMERFE 415 Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482 L+E Q D IL+ RLR L +LEE +I+ E + LL E++++ +LL S + + E+ + Sbjct: 416 LSEVQADYILDTRLRQLARLEEMKIRGEQEELLKEQKRLQTLLGSEAKLKKLVREELIKD 475 Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQA-MIEKEPITVVISNRGWIRSLKSHSVDLS 541 E + RR+ V+RA+ L + ++ EP+TVV+S +GW+R K H +D + Sbjct: 476 AETYGDD-----RRSPI--VARAEARALSETELMPTEPVTVVLSEKGWVRCAKGHDIDAA 528 Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD 601 L +K GD K A + + + + G++Y+LPA +L S RG GE + + Sbjct: 529 GLSYKAGDGFKAAAPGRSNQYAVFIDSTGRSYSLPAHSLPSARGQGEPLSGRLTPPPGAS 588 Query: 602 IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTG 658 + D ++ S G F+V+ ++ A + GK L + + + + V V Sbjct: 589 FECVLLPDDDALFVIASDAGYGFVVKGEDLQAKNKAGKALLSLPNGSAVVAPRPVRDVEQ 648 Query: 659 DHVAVVGENRKLLIFSIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTW 711 D +A V +LL+F + +P++ +GKG ++ + ++ ++D+ + G T Sbjct: 649 DWLAAVTTEGRLLLFKVSDLPQLGKGKGNKIIGIPGERVASREEYLTDLAV--LPAGATL 706 Query: 712 IDSAG-RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751 + AG R+ + +DL + G+RG G+ +P+GF R L Sbjct: 707 VLQAGKRTLSLKGDDLEHYKGERGRRGNKLPRGFQRVDSLL 747 >gi|168242999|ref|ZP_02667931.1| DNA topoisomerase IV, A subunit [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|194446354|ref|YP_002042439.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194450551|ref|YP_002047170.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|204928359|ref|ZP_03219559.1| DNA topoisomerase IV, A subunit [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|194405017|gb|ACF65239.1| DNA topoisomerase IV, A subunit [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194408855|gb|ACF69074.1| DNA topoisomerase IV, A subunit [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|204322681|gb|EDZ07878.1| DNA topoisomerase IV, A subunit [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205337904|gb|EDZ24668.1| DNA topoisomerase IV, A subunit [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|322613577|gb|EFY10518.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322621169|gb|EFY18027.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322624232|gb|EFY21066.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322628030|gb|EFY24819.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322633147|gb|EFY29889.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322636275|gb|EFY32983.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322639370|gb|EFY36060.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322647455|gb|EFY43944.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322648640|gb|EFY45087.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322653692|gb|EFY50018.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322657800|gb|EFY54068.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322663901|gb|EFY60100.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322669086|gb|EFY65237.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322672919|gb|EFY69026.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322678090|gb|EFY74153.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322681266|gb|EFY77299.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322687803|gb|EFY83770.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323195615|gb|EFZ80792.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323199703|gb|EFZ84793.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323202548|gb|EFZ87588.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323207963|gb|EFZ92909.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323212485|gb|EFZ97302.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323215033|gb|EFZ99781.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323222763|gb|EGA07128.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323224155|gb|EGA08448.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323230479|gb|EGA14597.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323235169|gb|EGA19255.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323239209|gb|EGA23259.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323244433|gb|EGA28439.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323247049|gb|EGA31015.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323253469|gb|EGA37298.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323256225|gb|EGA39961.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323262600|gb|EGA46156.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323267305|gb|EGA50789.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323269292|gb|EGA52747.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 752 Score = 515 bits (1327), Expect = e-144, Method: Compositional matrix adjust. Identities = 272/740 (36%), Positives = 447/740 (60%), Gaps = 29/740 (3%) Query: 23 RFALEE----RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78 R AL E YL Y++ I +RA+P + DG KPV RRI++AMSE+GL+ A FKKSAR Sbjct: 7 RLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSART 66 Query: 79 VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMT 137 VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S AA RYTE+R++ Sbjct: 67 VGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLS 126 Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197 + AEL+L + + D+ ++ EP + P++ PN+L NGT+GIAVGMAT IP HN++ Sbjct: 127 KYAELLLSELGQGTADWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLR 186 Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257 E+ +AA+ LI+ P+ ++++LL+ + GPD+PT I+ R I + Y GRG R+RA W Sbjct: 187 EVAKAAITLIEQPKTTLDQLLDIVQGPDYPTEAEIITPRAEIRKIYENGRGSVRMRAVWT 246 Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFP 315 E+ +V++ +P+QV ++++E+IA + K++P+++D+RDES + R+V+ P Sbjct: 247 KED-----GAVVISALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVP 301 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 ++ +D + +M +F +D+E + +N+N++ + P V L IL EWLA RR+ + RR Sbjct: 302 RSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEWLAFRRDTVRRR 361 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435 ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF ++E Q +AIL L+ Sbjct: 362 LNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGISETQAEAILELK 421 Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495 LR L KLEE +I+ E D L E++++ +L S ++ + E++ + + R Sbjct: 422 LRHLAKLEEMKIRGEQDELEKERDQLQGILASERKMNTLLKKELQADSDAYGDD-----R 476 Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555 R+ E A KA + M+ EP+T+V+S GW+RS K H +D L++K GDS K A+ Sbjct: 477 RSPLREREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAV 535 Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615 + ++ + T G++Y + L S RG GE + + L + + KLL Sbjct: 536 KGKSNQPVVFIDTTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVEHMLMEGDDQKLL 595 Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--KLVVKVTGDHVAVVGENRKLLIF 673 + S G F+ ++++A R GK + + + LV++ D + + + ++L+F Sbjct: 596 MASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPLVIEDEHDMLLAITQAGRMLMF 655 Query: 674 SIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDL 726 +D +P++S+GKG ++ + D G++ + LT I R +L Sbjct: 656 PVDSLPQLSKGKGNKIINIPSAEAAKGDDGLAHLYVLPPQSTLT-IHVGKRKIKLRPEEL 714 Query: 727 LGWLGKRGGVGSLVPKGFPR 746 +G+RG G+L+ +G R Sbjct: 715 QKVVGERGRRGTLM-RGLQR 733 >gi|323131534|gb|ADX18964.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] Length = 760 Score = 515 bits (1326), Expect = e-143, Method: Compositional matrix adjust. Identities = 271/747 (36%), Positives = 452/747 (60%), Gaps = 25/747 (3%) Query: 12 LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71 L+ + + ++L E YL Y++ I +RA+P + DG KPV RRI++AMSE+GL+ A Sbjct: 8 LMSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAK 67 Query: 72 FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYR 130 FKKSAR VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S AA R Sbjct: 68 FKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMR 127 Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190 YTE+R+++ AEL+L + + D+ ++ EP + P++ PN+L NGT+GIAVGMAT Sbjct: 128 YTESRLSKYAELLLSELGQGTADWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATD 187 Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250 IP HN++E+ +AA+ LI+ P+ ++++LL+ + GPD+PT I+ R I + Y GRG Sbjct: 188 IPPHNLREVAKAAITLIEQPKTTLDQLLDIVQGPDYPTEAEIITPRAEIRKIYENGRGSV 247 Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-- 308 R+RA W E+ +V++ +P+QV ++++E+IA + K++P+++D+RDES + Sbjct: 248 RMRAVWTKED-----GAVVISALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENP 302 Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368 R+V+ P++ +D + +M +F +D+E + +N+N++ + P V L IL EWLA R Sbjct: 303 TRLVIVPRSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEWLAFR 362 Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQV 428 R+ + RR ++R++ + +R+ IL+GLL+A+LNIDE+I IIR+ED+PKP ++SRF ++E Q Sbjct: 363 RDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRSEDEPKPALMSRFGISETQA 422 Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488 +AIL L+LR L KLEE +I+ E D L E++++ +L S ++ + E++ + + Sbjct: 423 EAILELKLRHLAKLEEMKIRGEQDELEKERDQLQGILASERKMNTLLKKELQADADAYGD 482 Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548 RR+ E A KA + M+ EP+T+V+S GW+RS K H +D L++K G Sbjct: 483 D-----RRSPLREREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAG 536 Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608 DS K A+ + ++ + T G++Y + L S RG GE + + L + + Sbjct: 537 DSFKAAVKGKSNQPVVFIDTTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVEHMLME 596 Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--KLVVKVTGDHVAVVGE 666 KLL+ S G F+ ++++A R GKT + + + LV++ D + + + Sbjct: 597 GDDQKLLMASDAGYGFVCTFNDLVARNRAGKTLITLPENAHVMPPLVIEDEHDMLLAITQ 656 Query: 667 NRKLLIFSIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTWIDSAGRSY 719 ++L+F +D +P++S+GKG ++ + D G++ + LT I R Sbjct: 657 AGRMLMFPVDSLPQLSKGKGNKIINIPSAEAAKGDDGLAHLYVLPPQSTLT-IHVGKRKI 715 Query: 720 NRSENDLLGWLGKRGGVGSLVPKGFPR 746 +L +G+RG G+L+ +G R Sbjct: 716 KLRPEELQKVVGERGRRGTLM-RGLQR 741 >gi|82778369|ref|YP_404718.1| DNA topoisomerase IV subunit A [Shigella dysenteriae Sd197] gi|81242517|gb|ABB63227.1| DNA topoisomerase IV subunit A [Shigella dysenteriae Sd197] Length = 752 Score = 515 bits (1326), Expect = e-143, Method: Compositional matrix adjust. Identities = 273/740 (36%), Positives = 446/740 (60%), Gaps = 29/740 (3%) Query: 23 RFALEE----RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78 R AL E YL Y++ I +RA+P + DG KPV RRI++AMSE+GL+ A FKKSAR Sbjct: 7 RLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSART 66 Query: 79 VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMT 137 VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S AA RYTE+R++ Sbjct: 67 VGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLS 126 Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197 + +EL+L + + D+ ++ EP + P++ PN+L NGT+GIAVGMAT IP HN++ Sbjct: 127 KYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLR 186 Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257 E+ +AA+ALID P+ ++++LL+ + GPD+PT I+ SR I + Y GRG R+RA W Sbjct: 187 EVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWK 246 Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFP 315 E+ +V++ +P+QV +R++E+IA + K++P+++D+RDES + R+V+ P Sbjct: 247 KED-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVP 301 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 ++ +D D +M +F +D+E + +N+N++ + P V L IL EWL RR+ + RR Sbjct: 302 RSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRR 361 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435 ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF LTE Q +AIL L+ Sbjct: 362 LNYRLEKVLKRLHILEGLLVAFLNIDELIEIIRNEDEPKPALMSRFGLTETQAEAILELK 421 Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495 LR L KLEE +I+ E L E++++ +L S ++ N + E++ + + R Sbjct: 422 LRHLAKLEEMKIRCEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDD-----R 476 Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555 R+ E A KA + M+ EP+T+V+S GW+RS K H +D L++K GDS K A+ Sbjct: 477 RSPLQEREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAV 535 Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615 + ++ + + G++Y + L S RG GE + + L + + KLL Sbjct: 536 KGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHILMESDDQKLL 595 Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--KLVVKVTGDHVAVVGENRKLLIF 673 + S G F+ ++++A R GK + + + +V++ D + + + ++L+F Sbjct: 596 MASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMF 655 Query: 674 SIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDL 726 + +P++S+GKG ++ + + G++ + LT I R +L Sbjct: 656 PVSDLPQLSKGKGNKIINIPSAEAARGEDGLAQLYVLPSQSTLT-IHVGKRKIKLRPEEL 714 Query: 727 LGWLGKRGGVGSLVPKGFPR 746 G+RG G+L+ +G R Sbjct: 715 QKVTGERGRRGTLM-RGLQR 733 >gi|332086678|gb|EGI91818.1| DNA topoisomerase IV, A subunit [Shigella boydii 5216-82] Length = 752 Score = 515 bits (1326), Expect = e-143, Method: Compositional matrix adjust. Identities = 273/740 (36%), Positives = 445/740 (60%), Gaps = 29/740 (3%) Query: 23 RFALEE----RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78 R AL E YL Y++ I +RA+P + DG KPV RRI++AMSE+GL+ A FKKSAR Sbjct: 7 RLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSART 66 Query: 79 VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMT 137 VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S AA RYTE+R++ Sbjct: 67 VGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLS 126 Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197 + +EL+L + + D+ ++ EP + P + PN+L NGT+GIAVGMAT IP HN++ Sbjct: 127 KYSELLLSELGQGTADWVPNFDGTLQEPKMLPVRLPNILLNGTTGIAVGMATDIPPHNLR 186 Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257 E+ +AA+ALID P+ ++++LL+ + GPD+PT I+ SR I + Y GRG R+RA W Sbjct: 187 EVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWK 246 Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFP 315 E+ +V++ +P+QV +R++E+IA + K++P+++D+RDES + R+V+ P Sbjct: 247 KED-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVP 301 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 ++ +D D +M +F +D+E + +N+N++ + P V L IL EWL RR+ + RR Sbjct: 302 RSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRR 361 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435 ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF LTE Q +AIL L+ Sbjct: 362 LNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAEAILELK 421 Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495 LR L KLEE +I+ E L E++++ +L S ++ N + E++ + + R Sbjct: 422 LRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDD-----R 476 Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555 R+ E A KA + M+ EP+T+V+S GW+RS K H +D L++K GDS K A+ Sbjct: 477 RSPLQEREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAV 535 Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615 + ++ + + G++Y + L S RG GE + + L + + KLL Sbjct: 536 KGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMESDDQKLL 595 Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--KLVVKVTGDHVAVVGENRKLLIF 673 + S G F+ ++++A R GK + + + +V++ D + + + ++L+F Sbjct: 596 MASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMF 655 Query: 674 SIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDL 726 + +P++S+GKG ++ + + G++ + LT I R +L Sbjct: 656 PVSDLPQLSKGKGNKIINIPSAEAARGEDGMAQLYVLPPQSTLT-IHVGKRKIKLRPEEL 714 Query: 727 LGWLGKRGGVGSLVPKGFPR 746 G+RG G+L+ +G R Sbjct: 715 QKVTGERGRRGTLM-RGLQR 733 >gi|15602234|ref|NP_245306.1| DNA topoisomerase IV subunit A [Pasteurella multocida subsp. multocida str. Pm70] gi|12720615|gb|AAK02453.1| ParC [Pasteurella multocida subsp. multocida str. Pm70] Length = 750 Score = 515 bits (1326), Expect = e-143, Method: Compositional matrix adjust. Identities = 276/746 (36%), Positives = 438/746 (58%), Gaps = 22/746 (2%) Query: 10 NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69 N + E ++ LR E+ YL Y++ I +RA+P + DG KPV RRII+AMSE+GL+ Sbjct: 2 NIINYEGIEQTPLREFTEKAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAMSELGLNAA 61 Query: 70 AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAA 128 A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S AA Sbjct: 62 AKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAA 121 Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188 RYTE+R+ ++A+++L + + VD++ ++ EP P++ P++L NGT+GIAVGMA Sbjct: 122 MRYTESRLAKIADILLSELGQGTVDYQPNFDGTLEEPQYLPARLPHILLNGTTGIAVGMA 181 Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248 T IP HN+ E+ EAA+ LIDNP+ S++ LL + GPD+PT I+ S+E I + Y GRG Sbjct: 182 TDIPPHNINELAEAAVMLIDNPKASLDDLLTVVQGPDYPTEAEIISSKEDIRKLYEQGRG 241 Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308 R+RA W E+ I++T +P+Q S++I +IAE + AK++P++EDIRDE+ + Sbjct: 242 SVRMRAVWKKED-----GEIIITALPHQASPSKVIAQIAEQMSAKKLPMVEDIRDEADHE 296 Query: 309 --VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366 +RIVL P++ +D D LM +F +D+E + +NMN++ + P V L IL EWL Sbjct: 297 NPIRIVLIPRSNRVDVDALMAHLFATTDLEKSYRVNMNMIGLDNRPAVKNLVQILTEWLQ 356 Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426 RR + RR +R+ + R+ IL+GLLIAYLNIDE+I +IR+ED+PK ++ RF L+E Sbjct: 357 FRRTTVTRRLQYRLNKVLDRLHILQGLLIAYLNIDEVIHVIRHEDEPKAALIDRFGLSET 416 Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486 Q +AILNLRLR L KLEE ++++E D L E++ + +L S ++ I EI++ + + Sbjct: 417 QAEAILNLRLRHLAKLEENELQAEKDRLEEERDSLQLILGSERRLNTLIKKEIQQDAQTY 476 Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546 + R + + + A KA + M EP+TV++S GW+R K H +D+ L +K Sbjct: 477 ASP-----RLSPLVQRAEA-KAISESDMTPAEPVTVILSEMGWVRCAKGHDIDVQNLSYK 530 Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606 GD + + + + + G++Y L +L S R GE + + L + Sbjct: 531 AGDKYLSHAYGKSNQAAVFIDSTGRSYALDPLSLPSARSQGEPLTGKLSLPAGASVEHVL 590 Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGE 666 + LL+ S G FI + ++IA + GK + + K+ +++ ++ +V Sbjct: 591 MEQDKQALLMASDAGYGFICQFDDLIARNKAGKALISLPENAKVLTPLRIDNENARLVAL 650 Query: 667 NR--KLLIFSIDQIPEMSRGKGVRLQSYKDGGISD-----VICFKICEGLTWIDSAG-RS 718 ++LIF + +P +++GKG ++ + V F I E + + AG R Sbjct: 651 TSAGRMLIFPVKDLPSLAKGKGNKIVTIPAAHAKARTELLVRLFLINEQTSLVFHAGKRK 710 Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGF 744 D + +RG G+ +P+G Sbjct: 711 ITLKPEDWQKFSAERGRKGTQLPRGL 736 >gi|152985708|ref|YP_001351012.1| DNA topoisomerase IV subunit A [Pseudomonas aeruginosa PA7] gi|150960866|gb|ABR82891.1| DNA topoisomerase IV, A subunit [Pseudomonas aeruginosa PA7] Length = 754 Score = 515 bits (1326), Expect = e-143, Method: Compositional matrix adjust. Identities = 282/761 (37%), Positives = 452/761 (59%), Gaps = 29/761 (3%) Query: 6 ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65 +S S L E V+ SL E+ YL Y++ I +RA+P + DG KPV RRI++AMSE+G Sbjct: 1 MSESLDLSLEGVERRSLAEFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIVYAMSELG 60 Query: 66 LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124 LD + KKSAR VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D Sbjct: 61 LDADSKHKKSARTVGDVLGKFHPHGDLACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPK 120 Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184 S AA RYTEAR+++ +E++L + + VD+ ++ EP V P++ PNLL NGT+GIA Sbjct: 121 SFAAMRYTEARLSRYSEVLLSELGQGTVDWVPNFDGTLDEPAVLPARLPNLLLNGTTGIA 180 Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244 VGMAT +P HN++E+ A + L+D P ++ +L E++ GPDFPT I+ R + + Y Sbjct: 181 VGMATDVPPHNLREVASACVRLLDQPGATVAELCEHVPGPDFPTEAEIITPRADLQKVYE 240 Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304 GRG R+RA + VE+ IV+ +P+QV S+++E+IA + AK++P++ D+RDE Sbjct: 241 TGRGSVRMRAVYRVED-----GDIVIHALPHQVSGSKVLEQIAGQMQAKKLPMVADLRDE 295 Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362 S + RIV+ P++ +D + LM +F +D+ET + +N+N++ + PQV L +L Sbjct: 296 SDHENPTRIVIIPRSNRVDVEELMTHLFATTDLETTYRVNLNIIGLDGKPQVKDLRQLLS 355 Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422 EWL +R + RR FR+ ++RR+ +L GLLIA+LN+DE+I IIR ED+PK V++ RF Sbjct: 356 EWLQYRIGTVRRRLQFRLDKVERRLHLLDGLLIAFLNLDEVIHIIRTEDQPKAVLMERFE 415 Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482 L+E Q D IL+ RLR L +LEE +I+ E + LL E++++ +LL S + + E+ + Sbjct: 416 LSEVQADYILDTRLRQLARLEEMKIRGEQEELLKEQKRLQTLLGSEAKLKKLVREELIKD 475 Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQA-MIEKEPITVVISNRGWIRSLKSHSVDLS 541 E + RR+ V+RA+ L + ++ EP+TVV+S +GW+R K H +D + Sbjct: 476 AETYGDD-----RRSPI--VARAEARALSETELMPTEPVTVVLSEKGWVRCAKGHDIDAA 528 Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD 601 L +K GD K A + + + + G++Y+LPA +L S RG GE + + Sbjct: 529 GLSYKAGDGFKAAAPGRSNQYAVFIDSTGRSYSLPAHSLPSARGQGEPLSGRLTPPPGAS 588 Query: 602 IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTG 658 + D ++ S G F+V+ ++ A + GK L + + + + V V Sbjct: 589 FECVLLPDDDALYVIASDAGYGFVVKGEDLQAKNKAGKALLSLPNGAAVVAPRPVRDVEQ 648 Query: 659 DHVAVVGENRKLLIFSIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTW 711 D +A V +LL+F + +P++ +GKG ++ + ++ ++D+ G T Sbjct: 649 DWLAAVTTEGRLLLFKVSDLPQLGKGKGNKIIGIPGERVASREEYLTDLAVLPA--GATL 706 Query: 712 IDSAG-RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751 + AG R+ + +DL + G+RG G+ +P+GF R L Sbjct: 707 VLQAGKRTLSLKGDDLEHYKGERGRRGNKLPRGFQRVDSLL 747 >gi|197249133|ref|YP_002148101.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|238909975|ref|ZP_04653812.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|197212836|gb|ACH50233.1| DNA topoisomerase IV, A subunit [Salmonella enterica subsp. enterica serovar Agona str. SL483] Length = 752 Score = 515 bits (1326), Expect = e-143, Method: Compositional matrix adjust. Identities = 272/740 (36%), Positives = 447/740 (60%), Gaps = 29/740 (3%) Query: 23 RFALEE----RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78 R AL E YL Y++ I +RA+P + DG KPV RRI++AMSE+GL+ A FKKSAR Sbjct: 7 RLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSART 66 Query: 79 VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMT 137 VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S AA RYTE+R++ Sbjct: 67 VGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLS 126 Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197 + AEL+L + + D+ ++ EP + P++ PN+L NGT+GIAVGMAT IP HN++ Sbjct: 127 KYAELLLSELGQGTADWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLR 186 Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257 E+ +AA+ LI+ P+ ++++LL+ + GPD+PT I+ R I + Y GRG R+RA W Sbjct: 187 EVAKAAITLIEQPKTTLDQLLDIVQGPDYPTEAEIITPRAEIRKIYENGRGSVRMRAVWT 246 Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFP 315 E+ +V++ +P+QV ++++E+IA + K++P+++D+RDES + R+V+ P Sbjct: 247 KED-----GAVVISALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVP 301 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 ++ +D + +M +F +D+E + +N+N++ + P V L IL EWLA RR+ + RR Sbjct: 302 RSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEWLAFRRDTVRRR 361 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435 ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF ++E Q +AIL L+ Sbjct: 362 LNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGISETQAEAILELK 421 Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495 LR L KLEE +I+ E D L E++++ +L S ++ + E++ + + R Sbjct: 422 LRHLAKLEEMKIRGEQDELEKERDQLQGILASERKMNTLLKKELQADADAYGDD-----R 476 Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555 R+ E A KA + M+ EP+T+V+S GW+RS K H +D L++K GDS K A+ Sbjct: 477 RSPLREREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAV 535 Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615 + ++ + T G++Y + L S RG GE + + L + + KLL Sbjct: 536 KGKSNQPVVFIDTTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVEHMLMEGDDQKLL 595 Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--KLVVKVTGDHVAVVGENRKLLIF 673 + S G F+ ++++A R GK + + + LV++ D + + + ++L+F Sbjct: 596 MASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPLVIEDEHDMLLAITQAGRMLMF 655 Query: 674 SIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDL 726 +D +P++S+GKG ++ + D G++ + LT I R +L Sbjct: 656 PVDSLPQLSKGKGNKIINIPSAEAAKGDDGLAHLYVLPPQSTLT-IHVGKRKIKLRPEEL 714 Query: 727 LGWLGKRGGVGSLVPKGFPR 746 +G+RG G+L+ +G R Sbjct: 715 QKVVGERGRRGTLM-RGLQR 733 >gi|299771905|ref|YP_003733931.1| DNA topoisomerase IV subunit A [Acinetobacter sp. DR1] gi|298701993|gb|ADI92558.1| DNA topoisomerase IV subunit A [Acinetobacter sp. DR1] Length = 739 Score = 515 bits (1326), Expect = e-143, Method: Compositional matrix adjust. Identities = 283/732 (38%), Positives = 439/732 (59%), Gaps = 21/732 (2%) Query: 27 EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86 E+ YL YA+ I +RA+P + DG KPV RRI++AMSE+GL KKSAR VG+V+GK Sbjct: 19 EQAYLNYAMYVIMDRALPHISDGLKPVQRRIVYAMSELGLKNSGKPKKSARTVGDVLGKY 78 Query: 87 HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQVAELILQ 145 HPHGD + Y+++V +AQPF RYPLI GQGN+G D S AA RYTEA+++ +EL+L Sbjct: 79 HPHGDSACYEAMVLMAQPFSYRYPLIEGQGNWGAPDDPKSFAAMRYTEAKLSAYSELLLN 138 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 + + D++D ++ EP+ P++ PN+L NGT+GIAVGMAT IP HN++E+ + +A Sbjct: 139 ELGQGTTDWQDNFDGSLKEPITLPARIPNILLNGTTGIAVGMATDIPPHNLREVIKGTIA 198 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265 LI NP+ S EKL EYI GPD PT I+ E +++ GRG +R+RA + +E+ Sbjct: 199 LIRNPQTSDEKLAEYIPGPDLPTKAEIITPPEELLKIQTTGRGSYRMRAVYTIEKNE--- 255 Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES--AEDVRIVLFPKNRSLDPD 323 IV+TE+PYQV S++I +IA+ + AK++PL+ DIRDES A R+V+ ++ +D + Sbjct: 256 --IVITELPYQVSGSKVITQIADQMQAKKLPLVVDIRDESDHANPTRLVIVLRSNRIDAE 313 Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383 +M +F +D+E+ + +N+N++ PQV + IL EW+ R++ + RR + + I Sbjct: 314 AVMSHLFATTDLESSYRVNLNMIGEDGRPQVKSIRRILLEWIEIRKKTVTRRLEYHLNRI 373 Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLE 443 ++R+ IL GLLIAYL+ID +I IIR ED+PKPV++ F++ E Q +AIL L+LR L KLE Sbjct: 374 EKRLHILAGLLIAYLDIDTVIRIIREEDQPKPVLMEHFNIDEIQAEAILELKLRHLAKLE 433 Query: 444 EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVS 503 E +I+ E D L A+ I L + + N I E++E + F RR+ V Sbjct: 434 EMEIRHEQDELAAKAAIIREQLENPESLKNLIIGELKEDAKKFGDE-----RRSPI--VV 486 Query: 504 RADKATL-QQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDR 562 RA+ + +Q ++ E +TVV+S GWIR+ K VD L+++ GD T R Sbjct: 487 RAEAVQIKEQDLMPAEAVTVVLSEAGWIRAAKGADVDAENLNYRAGDQYLSHAVGKTNQR 546 Query: 563 ILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGN 622 I L G++Y LP +L S RG GE + + + ++ D +L+ S+ G Sbjct: 547 IYFLDETGRSYALPISSLPSARGLGEPLSSKLAPASGVSFIQVYLEDEESELIAASTSGY 606 Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEK-MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEM 681 F + ++ N + GKTFL V + K + L+ H+AV+ +LLI + ++P + Sbjct: 607 GFKTQTKQLDTNAKAGKTFLSVPEKSKALPLISAQNMTHLAVLSSAGRLLIIDLAELPNL 666 Query: 682 SRGKGVRL-QSYKDGGISDVICFKICEGLTWIDSAGRSYNRSE-NDLLGWLGKRGGVGSL 739 ++GKG +L Q I + + E + + AG+ + + + +DL ++GKR G L Sbjct: 667 NKGKGNKLIQLDAKEQILSMTTLNLDEIIQVV--AGQQHLKLKGDDLQKYMGKRASKGQL 724 Query: 740 VPKGFPRSGKFL 751 +P+G+ ++ K L Sbjct: 725 LPRGYQKANKLL 736 >gi|312914199|dbj|BAJ38173.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] Length = 752 Score = 515 bits (1326), Expect = e-143, Method: Compositional matrix adjust. Identities = 272/740 (36%), Positives = 449/740 (60%), Gaps = 29/740 (3%) Query: 23 RFALEE----RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78 R AL E YL Y++ I +RA+P + DG KPV RRI++AMSE+GL+ A FKKSAR Sbjct: 7 RLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKFKKSART 66 Query: 79 VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMT 137 VG+V+GK HPHGD++ Y+++V +AQPF RYPL+ GQGN+G D S AA RYTE+R++ Sbjct: 67 VGDVLGKYHPHGDRACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLS 126 Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197 + AEL+L + + D+ ++ EP + P++ PN+L NGT+GIAVGMAT IP HN++ Sbjct: 127 KYAELLLSELGQGTADWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLR 186 Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257 E+ +AA+ LI+ P+ ++++LL+ + GPD+PT I+ R I + Y GRG R+RA W Sbjct: 187 EVAKAAITLIEQPKTTLDQLLDIVQGPDYPTEAEIITPRAEIRKIYENGRGSVRMRAVWT 246 Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFP 315 E+ +V++ +P+QV ++++E+IA + K++P+++D+RDES + R+V+ P Sbjct: 247 KED-----GAVVISALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVP 301 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 ++ +D + +M +F +D+E + +N+N++ + P V L IL EWLA RR+ + RR Sbjct: 302 RSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEWLAFRRDTVRRR 361 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435 ++R++ + +R+ IL+GLL+A+LNIDE+I IIR+ED+PKP ++SRF ++E Q +AIL L+ Sbjct: 362 LNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRSEDEPKPALMSRFGISETQAEAILELK 421 Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495 LR L KLEE +I+ E D L E++++ +L S ++ + E++ + + R Sbjct: 422 LRHLAKLEEMKIRGEQDELEKERDQLQGILASERKMNTLLKKELQADADAYGDD-----R 476 Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555 R+ E A KA + M+ EP+T+V+S GW+RS K H +D L++K GDS K A+ Sbjct: 477 RSPLREREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAV 535 Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615 + ++ + T G++Y + L S RG GE + + L + + KLL Sbjct: 536 KGKSNQPVVFIDTTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVEHMLMEGDDQKLL 595 Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--KLVVKVTGDHVAVVGENRKLLIF 673 + S G F+ ++++A R GKT + + + LV++ D + + + ++L+F Sbjct: 596 MASDAGYGFVCTFNDLVARNRAGKTLITLPENAHVMPPLVIEDEHDMLLAITQAGRMLMF 655 Query: 674 SIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDL 726 +D +P++S+GKG ++ + D G++ + LT I R +L Sbjct: 656 PVDSLPQLSKGKGNKIINIPSAEAAKGDDGLAHLYVLPPQSTLT-IHVGKRKIKLRPEEL 714 Query: 727 LGWLGKRGGVGSLVPKGFPR 746 +G+RG G+L+ +G R Sbjct: 715 QKVVGERGRRGTLM-RGLQR 733 >gi|260913632|ref|ZP_05920108.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Pasteurella dagmatis ATCC 43325] gi|260632171|gb|EEX50346.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Pasteurella dagmatis ATCC 43325] Length = 752 Score = 515 bits (1326), Expect = e-143, Method: Compositional matrix adjust. Identities = 277/746 (37%), Positives = 441/746 (59%), Gaps = 22/746 (2%) Query: 10 NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69 NT+ E ++ LR E+ YL Y++ I +RA+P + DG KPV RRII+AMSE+GL+ Sbjct: 2 NTINYEGIEQTPLREFTEKAYLNYSMYVILDRALPFIGDGLKPVQRRIIYAMSELGLNAT 61 Query: 70 AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAA 128 A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S AA Sbjct: 62 AKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAA 121 Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188 RYTE+R++++AE++L + + VD++ ++ +EP P++ P++L NGT+GIAVGMA Sbjct: 122 MRYTESRLSKIAEVLLSELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMA 181 Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248 T IP HN+ EI +AA+ LIDNP+ +++ LL + GPD+PT I+ S++ I + Y GRG Sbjct: 182 TDIPPHNINEIADAAVMLIDNPKATLDDLLTVVQGPDYPTEAEIISSKDDIRKLYEQGRG 241 Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308 R+RA W E+ IV+T +P+Q S++I +IA+ + AK++P++EDIRDE+ + Sbjct: 242 SVRMRAVWKKED-----GEIVITALPHQSSPSKVIAQIADQMTAKKLPMVEDIRDEADHE 296 Query: 309 --VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366 +RIV+ P++ +D D LM +F +D+E + +NMN++ + P V L IL EWL Sbjct: 297 SPIRIVIVPRSNRVDCDALMAHLFATTDLEKSYRVNMNMIGLDNKPAVKSLVEILTEWLQ 356 Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426 RR + RR R+ + R+ IL GL+IAYLNIDE+I IIRNED+PK V+++RF+LT+ Sbjct: 357 FRRTTVTRRLQHRLDKVLARLHILDGLMIAYLNIDEVIQIIRNEDEPKQVLIARFNLTDE 416 Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486 Q +AILNLRLR L KLEE+++++E D L E++ + L S ++ I EI++ + + Sbjct: 417 QAEAILNLRLRHLAKLEEHELQAEKDRLEEERDSLQLTLGSERRLNGLIKKEIQQDAKTY 476 Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546 + R + E + A KA + M EP+TV++S GW+R K H +D+ + +K Sbjct: 477 TSP-----RLSPLVERAEA-KAISESDMTPAEPVTVILSEMGWVRCAKGHDIDVQNISYK 530 Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606 GD + + + + + G++Y L L S R GE + + L + Sbjct: 531 AGDKYLAHAYGKSNQAAVFIDSTGRSYALDPLTLPSARSQGEPLTGKLTLPAGASVEQVL 590 Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGE 666 + LL+ S G FI + +++A + GK + + ++ +K+T + +V Sbjct: 591 IETENQPLLMASDAGYGFICKFEDLVARNKAGKALISLPENARVLPPLKLTNETALLVAL 650 Query: 667 NR--KLLIFSIDQIPEMSRGKGVRLQSYKDGGISD-----VICFKICEGLTWIDSAG-RS 718 ++LIF +P +++GKG ++ + D V I E T + +G R Sbjct: 651 TSAGRMLIFPAKDLPSLAKGKGNKIVTIPAVNAKDRSELLVRLLLIEESSTLVFHSGKRK 710 Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGF 744 +L + +RG G+ +P+G Sbjct: 711 VTLKPEELQKFRAERGRKGTQLPRGL 736 >gi|262280640|ref|ZP_06058423.1| DNA topoisomerase IV [Acinetobacter calcoaceticus RUH2202] gi|262257540|gb|EEY76275.1| DNA topoisomerase IV [Acinetobacter calcoaceticus RUH2202] Length = 739 Score = 514 bits (1325), Expect = e-143, Method: Compositional matrix adjust. Identities = 283/732 (38%), Positives = 437/732 (59%), Gaps = 21/732 (2%) Query: 27 EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86 E+ YL YA+ I +RA+P + DG KPV RRI+ AMSE+GL KKSAR VG+V+GK Sbjct: 19 EQAYLNYAMYVIMDRALPHISDGLKPVQRRIVFAMSELGLKNSGKPKKSARTVGDVLGKY 78 Query: 87 HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQVAELILQ 145 HPHGD + Y+++V +AQPF RYPLI GQGN+G D S AA RYTEA+++ +EL+L Sbjct: 79 HPHGDSACYEAMVLMAQPFSYRYPLIEGQGNWGAPDDPKSFAAMRYTEAKLSAYSELLLN 138 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 + + D++D ++ EP+ P++ PN+L NGT+GIAVGMAT IP HN++E+ + +A Sbjct: 139 ELGQGTTDWQDNFDGSLKEPITLPARIPNILLNGTTGIAVGMATDIPPHNLREVIKGTIA 198 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265 LI NP+ S EKL EYI PD PT I+ E +++ GRG +R+RA + +E+ Sbjct: 199 LIRNPQTSDEKLAEYIPAPDLPTKAEIITPPEELLKIQTTGRGSYRMRAVYTIEKNE--- 255 Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES--AEDVRIVLFPKNRSLDPD 323 IV+TE+PYQV S++I +IA+ + AK++PL+ DIRDES A R+V+ ++ +D + Sbjct: 256 --IVITELPYQVSGSKVITQIADQMQAKKLPLVVDIRDESDHANPTRLVIVLRSNRIDAE 313 Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383 +M +F +D+E+ + +N+N++ PQV + IL EW+ R++ + RR + + I Sbjct: 314 AVMSHLFATTDLESSYRVNLNMIGEDGRPQVKSIRRILLEWIEIRKKTVTRRLEYHLNRI 373 Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLE 443 ++R+ IL GLLIAYL+ID +I IIR ED+PKPV++ F + E Q +AIL L+LR L KLE Sbjct: 374 EKRLHILAGLLIAYLDIDTVIRIIREEDQPKPVLMEHFKIDEIQAEAILELKLRHLAKLE 433 Query: 444 EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVS 503 E +I+ E D L A+ I L + + N I E++E + F RR+ V+ Sbjct: 434 EMEIRQEQDELAAKAAIIREQLGNPESLKNLIIGELKEDAKKFGDE-----RRSPI--VA 486 Query: 504 RADKATL-QQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDR 562 RA+ + +Q ++ E +TVV+S GWIR+ K VD L+++ GD T R Sbjct: 487 RAEAVQIKEQDLVPAETVTVVLSEAGWIRAAKGADVDAENLNYRAGDQYLSHAVGKTNQR 546 Query: 563 ILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGN 622 I L G++Y LP +L S RG GE + + + ++ D +L+ S+ G Sbjct: 547 IYFLDETGRSYALPISSLPSARGLGEPLSSKLAPASGVSFIQVYLEDEASELIAASTSGY 606 Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEK-MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEM 681 F + ++ N + GKTFL V + K + L+ H+AV+ +LLI + ++P + Sbjct: 607 GFKTQAKQLDTNAKAGKTFLSVPDKSKALPLISAQNMTHLAVLSSAGRLLIIDLAELPNL 666 Query: 682 SRGKGVRL-QSYKDGGISDVICFKICEGLTWIDSAGRSYNRSE-NDLLGWLGKRGGVGSL 739 ++GKG +L Q I + + E + + AG+ + + + +DL +LGKR G L Sbjct: 667 NKGKGNKLIQLEAKEQILSMTTLNLDEIIQVV--AGQQHLKLKGDDLQKYLGKRASKGQL 724 Query: 740 VPKGFPRSGKFL 751 +P+G+ ++ K L Sbjct: 725 LPRGYQKANKLL 736 >gi|323966552|gb|EGB61985.1| DNA topoisomerase IV [Escherichia coli M863] Length = 752 Score = 514 bits (1325), Expect = e-143, Method: Compositional matrix adjust. Identities = 272/740 (36%), Positives = 446/740 (60%), Gaps = 29/740 (3%) Query: 23 RFALEE----RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78 R AL E YL Y++ I +RA+P + DG KPV RRI++AMSE+GL+ A FKKSAR Sbjct: 7 RLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSART 66 Query: 79 VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMT 137 VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S AA RYTE+R++ Sbjct: 67 VGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLS 126 Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197 + +EL+L + + D+ ++ EP + P++ PN+L NGT+GIAVGMAT IP HN++ Sbjct: 127 KYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLR 186 Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257 E+ +AA+ALID P+ ++++LL+ + GPD+PT I+ SR I + Y GRG R+RA W Sbjct: 187 EVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWK 246 Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFP 315 E+ +V++ +P+QV +R++E+IA + K++P+++D+RDES + R+V+ P Sbjct: 247 KED-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVP 301 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 ++ +D D +M +F+ +D+E + +N+N++ + P V L IL EWL RR+ + RR Sbjct: 302 RSNRVDMDQVMNHLFVTTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRR 361 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435 ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF LTE Q +AIL L+ Sbjct: 362 LNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAEAILELK 421 Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495 LR L KLEE +I+ E L E++++ +L S ++ + E++ + + R Sbjct: 422 LRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNKLLKKELQADAQAYGDD-----R 476 Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555 R+ E A KA + M+ EP+T+V+S GW+RS K H +D L++K GDS K A+ Sbjct: 477 RSPLQEREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAV 535 Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615 + ++ + + G++Y + L S RG GE + + L + + KLL Sbjct: 536 KGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMESDDQKLL 595 Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--KLVVKVTGDHVAVVGENRKLLIF 673 + S G F+ ++++A R GK + + + +V++ D + + + ++L+F Sbjct: 596 MASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMF 655 Query: 674 SIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDL 726 + +P++S+GKG ++ + + G++ + LT I R +L Sbjct: 656 PVSDLPQLSKGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLT-IHVGKRKIKLRPEEL 714 Query: 727 LGWLGKRGGVGSLVPKGFPR 746 G+RG G+L+ +G R Sbjct: 715 QKVTGERGRRGTLM-RGLQR 733 >gi|300950773|ref|ZP_07164660.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 116-1] gi|300449943|gb|EFK13563.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 116-1] Length = 752 Score = 514 bits (1325), Expect = e-143, Method: Compositional matrix adjust. Identities = 273/740 (36%), Positives = 446/740 (60%), Gaps = 29/740 (3%) Query: 23 RFALEE----RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78 R AL E YL Y++ I +RA+P + DG KPV RRI++AMSE+GL+ A FKKSAR Sbjct: 7 RLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSART 66 Query: 79 VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMT 137 VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S AA RYTE+R++ Sbjct: 67 VGDVLGKYHPHGDIACYEAMVLMAQPFSYRYPLVDGQGNWGTPDDPKSFAAMRYTESRLS 126 Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197 + +EL+L + + D+ ++ EP + P++ PN+L NGT+GIAVGMAT IP HN++ Sbjct: 127 KYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLR 186 Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257 E+ +AA+ALID P+ ++++LL+ + GPD+PT I+ SR I + Y GRG R+RA W Sbjct: 187 EVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWK 246 Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFP 315 E+ +V++ +P+QV +R++E+IA + K++P+++D+RDES + R+V+ P Sbjct: 247 KED-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVP 301 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 ++ +D D +M +F +D+E + +N+N++ + P V L IL EWL RR+ + RR Sbjct: 302 RSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRR 361 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435 ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF LTE Q +AIL L+ Sbjct: 362 LNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAEAILELK 421 Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495 LR L KLEE +I+ E L E++++ +L S ++ N + E++ + + R Sbjct: 422 LRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDD-----R 476 Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555 R+ E A KA + M+ EP+T+V+S GW+RS K H +D L++K GDS K A+ Sbjct: 477 RSPLQEREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAV 535 Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615 + ++ + + G++Y + L S RG GE + + L + + KLL Sbjct: 536 KGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLLPGATVDHMLMESDDQKLL 595 Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--KLVVKVTGDHVAVVGENRKLLIF 673 + S G F+ ++++A R GK + + + +V++ D + + + ++L+F Sbjct: 596 MASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMF 655 Query: 674 SIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDL 726 + +P++S+GKG ++ + + G++ + LT I R +L Sbjct: 656 PVSDLPQLSKGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLT-IHVGKRKIKLRPEEL 714 Query: 727 LGWLGKRGGVGSLVPKGFPR 746 G+RG G+L+ +G R Sbjct: 715 QKVTGERGRRGTLM-RGLQR 733 >gi|312885198|ref|ZP_07744877.1| DNA topoisomerase IV subunit A [Vibrio caribbenthicus ATCC BAA-2122] gi|309367138|gb|EFP94711.1| DNA topoisomerase IV subunit A [Vibrio caribbenthicus ATCC BAA-2122] Length = 750 Score = 514 bits (1325), Expect = e-143, Method: Compositional matrix adjust. Identities = 279/752 (37%), Positives = 460/752 (61%), Gaps = 27/752 (3%) Query: 9 SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68 SN + + V+ + +R E+ YL Y++ I +RA+P + DG KPV RRII+AMSE+GL Sbjct: 2 SNEITYDGVEQLPMRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61 Query: 69 GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAA 127 A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S A Sbjct: 62 AAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFA 121 Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187 A RYTEA++++ AE++L + + V+++ ++ EP + P++ P++L NG +GIAVGM Sbjct: 122 AMRYTEAKLSKFAEVLLGELGQGTVEWQPNFDGTMKEPQMLPARLPHILLNGVTGIAVGM 181 Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247 AT IP HNV+E+ +AA+ LIDNP+ + ++E++ GPD+PT I+ + + + YR GR Sbjct: 182 ATDIPPHNVREVAKAAIHLIDNPKSELSDVMEFVQGPDYPTEAEIISPKAELEKMYRTGR 241 Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307 G ++RA W E I++T +P+QV ++L+E+IA + AK++P+++D+RDES Sbjct: 242 GSIKMRAVWKKE-----GPEIIITALPHQVSGAKLLEQIANQMRAKKLPMVDDLRDESDH 296 Query: 308 D--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365 + RIV+ P++ +D D LM +F +D+E + +N+N++ + PQV L IL EW+ Sbjct: 297 ENPTRIVIVPRSNRIDCDQLMNHLFASTDLEKNYRVNLNMIGLDNRPQVKGLVQILAEWI 356 Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425 +RR + RR +R+ + R+ +L+GLL+AYLN+DE+I IIRNED+PK ++SRF LTE Sbjct: 357 EYRRATVRRRLQYRLDKVLARLHVLEGLLVAYLNLDEVIEIIRNEDEPKAELMSRFGLTE 416 Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485 Q DAIL+ +LR L KLEE +I+ E + L E++K+++LL S ++ + EI E Sbjct: 417 IQADAILDTKLRHLAKLEEMKIRGEQEELEKERKKLETLLGSERRLNTLLKKEIEADAEK 476 Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545 + RR+ E A KA ++ ++ EPITVV+S++GW+R K H +D + L++ Sbjct: 477 YGDD-----RRSPLIEREEA-KALTERDLVPSEPITVVLSDKGWVRHAKGHELDPATLNY 530 Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605 K GD ++ ++LL +DG++Y+L + +L S R GE I ++++ +I Sbjct: 531 KSGDKYLAHARGKSSQPVVLLGSDGRSYSLESHSLPSARSQGEPITGRLNISSGSNIRHL 590 Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVA 662 + + LV S G F+ + S++++ ++ GK + + ++ + + D + Sbjct: 591 VMGEEEQLWLVGSDAGYGFVCKGSDLLSKSKSGKALVNLPESSEVLPPYAIGHLDSDEIL 650 Query: 663 VVGENRKLLIFSIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTWIDSA 715 V ++L+F I +P++ +GKG ++ +D +S +I + +G T A Sbjct: 651 AVTNQGRMLLFPIKDLPQLGKGKGNKIINIPAAKAKSRDEFVSHLIA--LPKGRTVTLYA 708 Query: 716 G-RSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746 G R E+DL + G+RG G L+P+G R Sbjct: 709 GKRKLGLKESDLDSFRGERGRRGGLLPRGLQR 740 >gi|261868259|ref|YP_003256181.1| DNA topoisomerase IV subunit A [Aggregatibacter actinomycetemcomitans D11S-1] gi|261413591|gb|ACX82962.1| DNA topoisomerase IV subunit A [Aggregatibacter actinomycetemcomitans D11S-1] Length = 751 Score = 514 bits (1325), Expect = e-143, Method: Compositional matrix adjust. Identities = 276/741 (37%), Positives = 446/741 (60%), Gaps = 22/741 (2%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 E ++ + LR E YL Y++ I +RA+P + DG KPV RRII+AMSE+GL+ A +KK Sbjct: 9 EGIEQMPLRHFTESAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAMSELGLNATAKYKK 68 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTE 133 SAR VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G +D S AA RYTE Sbjct: 69 SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAVDDPKSFAAMRYTE 128 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 +R+++++E++L + + VD++ ++ EP P++ P++L NGT+GIAVGMAT IP Sbjct: 129 SRLSKISEILLAELGQGTVDYQPNFDGTLEEPQYLPARLPHILLNGTTGIAVGMATDIPP 188 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ EI +AA+ L+DNP+ ++++LL + GPDFPT I+ +E I + Y+LGRG ++R Sbjct: 189 HNINEIADAAVMLLDNPKTTLDELLTVVQGPDFPTEAEIISPKEDIRKIYQLGRGSIKMR 248 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRI 311 A W E+ IV++ +P+Q S++I +IAE + AK++P++EDIRDE+ + VRI Sbjct: 249 ATWKKED-----GEIVISALPHQSSPSKVIAQIAEQMNAKKLPMVEDIRDEADHENPVRI 303 Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371 VL P++ +D D +M +F +D+E + +NMN++ + P V L IL EWL+ RR Sbjct: 304 VLVPRSNRVDIDAVMAHLFATTDLEKSYRVNMNMIGLDHKPAVKNLLEILTEWLSFRRTT 363 Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431 + RR + + + R+ IL+GL+IA+LNIDE+I IIR ED+PK +++RF+L++ Q +AI Sbjct: 364 VTRRLQYHLNKVLARLHILQGLMIAFLNIDEVIHIIRYEDEPKAELMARFNLSDEQAEAI 423 Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491 LNLRLR L KLEE+++++E L E+ ++ +L S ++ + EI++ +I++ Sbjct: 424 LNLRLRHLAKLEEHELQAEQAELEKERSSLEEILGSERRLNTLLKKEIQQDAKIYASP-- 481 Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551 RR+ E + A KA + M+ EP+TV++S GW+R K H +D L +K GD Sbjct: 482 ---RRSPLVERAEA-KAIAENEMLPTEPVTVILSEMGWVRCAKGHDIDPQGLSYKAGDKY 537 Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611 + + + + + G++Y L L S R GE + + L I + + Sbjct: 538 LAHAYGKSNQAAVFIDSTGRSYALDPLTLPSARSQGEPLTGKLTLPAGATIDQLLIENED 597 Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--KLVVKVTGDHVAVVGENRK 669 LL+ S G FI + +++IA + GK + + K+ L +K + + + + Sbjct: 598 QPLLMASDAGYGFICKFADLIARNKAGKALISLPENAKVLPPLTLKNSTALLVALTSAGR 657 Query: 670 LLIFSIDQIPEMSRGKG---VRLQSYKDGGISDVIC--FKICEGLTWIDSAG-RSYNRSE 723 +LIF +PE+S+GKG V + S S+++ I E + + +G R Sbjct: 658 MLIFPAQDLPELSKGKGNKIVTIPSANAKARSELLVHLLLIEENSSLVFHSGRRKIVLKP 717 Query: 724 NDLLGWLGKRGGVGSLVPKGF 744 DL + +RG G+ +P+G Sbjct: 718 EDLQKFRAERGRKGTQLPRGL 738 >gi|254281513|ref|ZP_04956481.1| DNA topoisomerase IV, A subunit [gamma proteobacterium NOR51-B] gi|219677716|gb|EED34065.1| DNA topoisomerase IV, A subunit [gamma proteobacterium NOR51-B] Length = 749 Score = 514 bits (1325), Expect = e-143, Method: Compositional matrix adjust. Identities = 275/741 (37%), Positives = 444/741 (59%), Gaps = 23/741 (3%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 +V+ +S+R E+ YL Y++ I +RA+P + DG KPV RRII+AMSE+GL G+ +KKS Sbjct: 10 SVETLSMRDYAEKAYLDYSMYVILDRALPHIGDGLKPVQRRIIYAMSELGLKAGSKYKKS 69 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEA 134 AR VG+VIGK HPHGD + Y+++V +AQ F RYPL+ GQGN+G+ D S AA RYTE+ Sbjct: 70 ARTVGDVIGKFHPHGDSAAYEAMVLMAQDFSYRYPLVDGQGNWGSADDPKSFAAMRYTES 129 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 ++ + AE++L + + VD++ ++ +EPVV P++ PN+L NGT+GIAVGMAT +P H Sbjct: 130 KLARYAEVLLGELGQGTVDWQPNFDGTLNEPVVLPAQVPNVLLNGTTGIAVGMATDVPPH 189 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 N++EI +A + L++NP+ ++ L EY+ GPD+PT I+ + + Y+ GRG ++RA Sbjct: 190 NLREIVDATVHLLENPKATVADLCEYVKGPDYPTDSEIITPEDDLQAMYQSGRGSVKMRA 249 Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIV 312 W VE+ IVV +PYQV SR++E+IA + A+++P++ D+RDES + R V Sbjct: 250 SWSVED-----GAIVVNALPYQVSGSRVLEQIAAQMQARKLPMVSDLRDESDHEHATRFV 304 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 + P++ +D + LM +F +D+E + +N+N++ + P V L+ IL EWL RR + Sbjct: 305 IVPRSNRVDLEGLMSHLFATTDLERNYRVNLNLIGIDGRPAVKALNVILGEWLRFRRTTV 364 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAIL 432 RR R+ ++RR+ +L+G LIAYLNIDE+I IIR E++PKP +++RF L++ Q +AIL Sbjct: 365 QRRLEHRLDRVNRRLHVLEGYLIAYLNIDEVIRIIREEEEPKPALIARFGLSDVQAEAIL 424 Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492 +L+LR+L KLEE +I+ E D L AE++K++ L S + I E+ V E+ Sbjct: 425 DLKLRNLAKLEEMKIRGEQDELAAERDKLELTLGSDARMKTLIKKELMAVAEVHGDE--- 481 Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLK 552 RR+ + A + + + +P+T+V+S GWIR+ K H +D ++L++K GD K Sbjct: 482 --RRSPITQREEA-RPFSETELASSDPLTIVLSEMGWIRAAKGHDIDPTSLNYKSGDGFK 538 Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612 +A + ++ + G+AY++ + L S RG GE + I+ + Sbjct: 539 LAARGKSNLPTVVFDSTGRAYSIASHALPSARGQGEPLTGRINPPSGATFEGLLTGADSD 598 Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT-GDH--VAVVGENRK 669 K L+ S G F+ +++ + + GK L + ++ V GD VA V + Sbjct: 599 KFLLASDAGYGFVARFADLQSKNKAGKACLNLPKGARVLQPAAVPLGDQLLVAAVTSLGR 658 Query: 670 LLIFSIDQIPEMSRGKG---VRLQSYKDGGISDV---ICFKICEGLTWIDSAGRSYNRSE 723 LL+F + +PEM+RGKG + + K +V +C + + + + + Sbjct: 659 LLVFPLSDLPEMARGKGNKIIGIPGPKAAAREEVVVGVCAMRSDDVLEVTAGKQHLKLKP 718 Query: 724 NDLLGWLGKRGGVGSLVPKGF 744 DL + G+RG G+ +PKGF Sbjct: 719 ADLEHYRGERGRRGNKLPKGF 739 >gi|27364065|ref|NP_759593.1| DNA topoisomerase IV subunit A [Vibrio vulnificus CMCP6] gi|320157448|ref|YP_004189827.1| topoisomerase IV subunit A [Vibrio vulnificus MO6-24/O] gi|27360183|gb|AAO09120.1| DNA topoisomerase IV, A subunit [Vibrio vulnificus CMCP6] gi|319932760|gb|ADV87624.1| topoisomerase IV subunit A [Vibrio vulnificus MO6-24/O] Length = 761 Score = 514 bits (1325), Expect = e-143, Method: Compositional matrix adjust. Identities = 269/687 (39%), Positives = 421/687 (61%), Gaps = 17/687 (2%) Query: 9 SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68 S + + V+ + +R E+ YL Y++ I +RA+P + DG KPV RRII+AMSE+GL Sbjct: 2 STEITYDGVEQLPMRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61 Query: 69 GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAA 127 A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S A Sbjct: 62 AAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFA 121 Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187 A RYTEA++++ A+++L + + V+++ ++ EP + P++ P++L NG +GIAVGM Sbjct: 122 AMRYTEAKLSKFADVLLGELGQGTVEWQPNFDGTMKEPKMLPARLPHILLNGVTGIAVGM 181 Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247 AT IP HNV+E+ +A + LIDNP + L++Y+ GPDFPT I+ + + YR GR Sbjct: 182 ATDIPPHNVREVADATIHLIDNPAAPLMDLMQYVKGPDFPTEAEIITPSSDLEKMYRSGR 241 Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307 G ++RA WC E GS IV+T +P+QV ++L+E+IA + AK++P++ED+RDES Sbjct: 242 GSVKMRAVWCKE----GS-DIVITALPHQVSGAKLLEQIAAQMRAKKLPMVEDLRDESDH 296 Query: 308 D--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365 + RIV+ P++ +D D LM +F +D+E + +N+N++ + PQV L IL EW+ Sbjct: 297 ENPTRIVIVPRSNRVDCDQLMNHLFASTDLEKSYRVNLNMIGLDNRPQVKGLVQILTEWI 356 Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425 RRE + R +R+ + R+ IL+GLLIAYLNIDE+I IIR ED PK V+++RF +T+ Sbjct: 357 TFRRETVRSRLQYRLDKVLARLHILEGLLIAYLNIDEVIEIIRTEDDPKAVLMARFGITD 416 Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485 Q DAIL+ +LR L KLEE +I+ E D L E++K++ LL S ++ + EIR E Sbjct: 417 IQADAILDTKLRHLAKLEEMKIRGEQDELEKERKKLEELLGSERRLNTLLKKEIRADAEK 476 Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545 F G R + V KA ++ ++ E ITVV+S +GWIR K H VD L + Sbjct: 477 F------GDDRRSPLVVREEAKALTERDLMPNEAITVVLSEKGWIRHAKGHEVDCQGLSY 530 Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605 K GDS + + +LL +DG++Y+L + L S RG GE I +++ I Sbjct: 531 KAGDSYLAHACGKSNQQAVLLGSDGRSYSLESHTLPSARGQGEPITGRLNITPGSSIRQV 590 Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVA 662 + + L+ S G F+ + S++++ R GK + + ++ V+ + D + Sbjct: 591 IMGEEEQLWLIGSDAGYGFVCKGSDLLSKNRSGKALVSLPENAEVMTPSAVLDLDNDDIL 650 Query: 663 VVGENRKLLIFSIDQIPEMSRGKGVRL 689 + ++L+F I +P++ +GKG ++ Sbjct: 651 AITNQGRMLMFPIKDLPQLGKGKGNKI 677 >gi|320184192|gb|EFW59008.1| Topoisomerase IV subunit A [Shigella flexneri CDC 796-83] Length = 752 Score = 514 bits (1325), Expect = e-143, Method: Compositional matrix adjust. Identities = 273/740 (36%), Positives = 446/740 (60%), Gaps = 29/740 (3%) Query: 23 RFALEE----RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78 R AL E YL Y++ I +RA+P + DG KPV RRI++AMSE+GL+ A FKKSAR Sbjct: 7 RLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSART 66 Query: 79 VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMT 137 VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S AA RYTE+R++ Sbjct: 67 VGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLS 126 Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197 + +EL+L + + D+ ++ EP + P++ PN+L NGT+GIAVGMAT IP HN++ Sbjct: 127 KYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLR 186 Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257 E+ +AA+ALID P+ ++++LL+ + GPD+PT I+ SR I + Y GRG R+RA W Sbjct: 187 EVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWK 246 Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFP 315 E+ +V++ +P+QV +R++E+IA + K++P+++D+RDES + R+V+ P Sbjct: 247 KED-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVP 301 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 ++ +D D +M +F +D+E + +N+N++ + P V L IL EWL RR+ + RR Sbjct: 302 RSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRR 361 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435 ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF LTE Q +AIL L+ Sbjct: 362 LNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAEAILELK 421 Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495 LR L KLEE +I+ E L E++++ +L S ++ N + E++ + + R Sbjct: 422 LRHLAKLEEMKIRGEQSELEKERDQLQGILVSERKMNNLLKKELQADAQAYGDD-----R 476 Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555 R+ E A KA + M+ EP+T+V+S GW+RS K H +D L++K GDS K A+ Sbjct: 477 RSPLQEREEA-KAMSEHDMLPSEPVTIVLSLMGWVRSAKGHDIDAPGLNYKAGDSFKAAV 535 Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615 + ++ + + G++Y + L S RG GE + + L + + KLL Sbjct: 536 KGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMESDDQKLL 595 Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--KLVVKVTGDHVAVVGENRKLLIF 673 + S G F+ ++++A R GK + + + +V++ D + + + ++L+F Sbjct: 596 MASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMF 655 Query: 674 SIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDL 726 + +P++S+GKG ++ + + G++ + LT I R +L Sbjct: 656 PVSDLPQLSKGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLT-IHVGKRKIKLRPEEL 714 Query: 727 LGWLGKRGGVGSLVPKGFPR 746 G+RG G+L+ +G R Sbjct: 715 QKVTGERGRRGTLM-RGLQR 733 >gi|28897205|ref|NP_796810.1| DNA topoisomerase IV subunit A [Vibrio parahaemolyticus RIMD 2210633] gi|260879173|ref|ZP_05891528.1| DNA topoisomerase IV, A subunit [Vibrio parahaemolyticus AN-5034] gi|260898010|ref|ZP_05906506.1| DNA topoisomerase IV, A subunit [Vibrio parahaemolyticus Peru-466] gi|260901429|ref|ZP_05909824.1| DNA topoisomerase IV, A subunit [Vibrio parahaemolyticus AQ4037] gi|28805414|dbj|BAC58694.1| DNA topoisomerase IV [Vibrio parahaemolyticus RIMD 2210633] gi|308086338|gb|EFO36033.1| DNA topoisomerase IV, A subunit [Vibrio parahaemolyticus Peru-466] gi|308094166|gb|EFO43861.1| DNA topoisomerase IV, A subunit [Vibrio parahaemolyticus AN-5034] gi|308106483|gb|EFO44023.1| DNA topoisomerase IV, A subunit [Vibrio parahaemolyticus AQ4037] gi|328471974|gb|EGF42851.1| DNA topoisomerase IV subunit A [Vibrio parahaemolyticus 10329] Length = 761 Score = 514 bits (1325), Expect = e-143, Method: Compositional matrix adjust. Identities = 284/750 (37%), Positives = 455/750 (60%), Gaps = 23/750 (3%) Query: 9 SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68 S + + V+ + +R E+ YL Y++ I +RA+P + DG KPV RRII+AMSE+GL Sbjct: 2 STEITYDGVEQLPMRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61 Query: 69 GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAA 127 A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S A Sbjct: 62 SAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFA 121 Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187 A RYTEA++++ AE++L + + V+++ ++ EP + P++ P++L NG +GIAVGM Sbjct: 122 AMRYTEAKLSKFAEVLLGELGQGTVEWQPNFDGTMKEPQMLPARLPHILLNGVTGIAVGM 181 Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247 AT IP HNV+E+ +A + LIDNP+ + ++++++ GPD+PT I+ + I + YR GR Sbjct: 182 ATDIPPHNVREVADATIHLIDNPKAELPEVMQFVKGPDYPTEAEIISPQAEIEKIYRNGR 241 Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307 G ++RA W E GS IV+T IP+QV S+L+E+IA + AK++P++ED+RDES Sbjct: 242 GSIKMRAVWHKE----GS-DIVITSIPHQVSGSKLLEQIANQMRAKKLPMVEDLRDESDH 296 Query: 308 D--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365 + RIV+ P++ +D DLLM +F +D+E + +N+N++ + PQV L IL EW+ Sbjct: 297 ENPTRIVIVPRSNRVDCDLLMNHLFASTDLERSYRVNLNMIGLDNRPQVKGLVQILSEWI 356 Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425 RR + RR +R+ + R+ IL+GLL+AYLN+DE+I IIR ED PK V++ RF +T+ Sbjct: 357 EFRRSTVRRRLQYRLDKVMARLHILEGLLVAYLNLDEVIEIIRTEDDPKAVLMERFGITD 416 Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485 Q DAIL+ +LR L KLEE +I+ E D L E+EK++ LL S ++ + EI+ E Sbjct: 417 IQADAILDTKLRHLAKLEEMKIRGEQDELEKEREKLEQLLGSERRLNTLLKKEIKADAEK 476 Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545 + RR+ E + A KA ++ ++ EPITVV+S +GW+R K H VD +L++ Sbjct: 477 YGDD-----RRSPLVERAEA-KALTERDLVPSEPITVVLSEKGWVRHAKGHDVDAESLNY 530 Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605 K GD ++ + L +DG++Y+L + +L S R GE I +++ I Sbjct: 531 KSGDKYLAHARGKSSQPAVFLGSDGRSYSLESHSLPSARSQGEPITGRLNITAGSSIRQV 590 Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVA 662 + + LV S G F+ + +++++ R GK + + + ++ K V + D + Sbjct: 591 IMSEEDQLWLVGSDAGYGFVCKGADLLSKNRSGKALVTLPANSEVMTPKEVGDLDSDEIL 650 Query: 663 VVGENRKLLIFSIDQIPEMSRGKG---VRLQSYKDGGISDVICFKIC--EGLTWIDSAG- 716 + ++L+F I +P++++GKG + + + K +V+ I +G + AG Sbjct: 651 AITNQGRMLLFPIKDLPQLAKGKGNKIINIPAAKAKEREEVLSHLIALPQGASLTLYAGK 710 Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746 R DL + G+RG GSL+P+G R Sbjct: 711 RKLGLKPADLENFRGERGRRGSLLPRGLQR 740 >gi|198242763|ref|YP_002217152.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|197937279|gb|ACH74612.1| DNA topoisomerase IV, A subunit [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] Length = 752 Score = 514 bits (1325), Expect = e-143, Method: Compositional matrix adjust. Identities = 273/740 (36%), Positives = 446/740 (60%), Gaps = 29/740 (3%) Query: 23 RFALEE----RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78 R AL E YL Y++ I +RA+P + DG KPV RRI++AMSE+GL+ A FKKSAR Sbjct: 7 RLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKFKKSART 66 Query: 79 VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMT 137 VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S AA RYTE+R++ Sbjct: 67 VGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLS 126 Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197 + AEL+L + + D+ ++ EP + P++ PN+L NGT+GIAVGMAT IP HN++ Sbjct: 127 KYAELLLSELGQGTADWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLR 186 Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257 E+ +AA+ LI+ P+ ++++LL+ + GPD+PT I+ R I + Y GRG R+RA W Sbjct: 187 EVAKAAITLIEQPKTTLDQLLDIVQGPDYPTEAEIITPRAEIRKIYENGRGSVRMRAVWT 246 Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFP 315 E+ +V+T +P+QV ++++E+IA + K++P+++D+RDES + R+V+ P Sbjct: 247 KED-----GAVVITALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVP 301 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 ++ +D + +M +F +D+E + +N+N++ + P V L IL EWLA RR+ + RR Sbjct: 302 RSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEWLAFRRDTVRRR 361 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435 ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF ++E Q +AIL L+ Sbjct: 362 LNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGISETQAEAILELK 421 Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495 LR L KLEE +I+ E D L E++++ +L S ++ + E++ + + R Sbjct: 422 LRHLAKLEEMKIRGEQDELEKERDQLQGILASERKMNTLLKKELQADSDAYGDD-----R 476 Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555 R+ E A KA + M+ EP+T+V+S GW+RS K H +D L++K GDS K A+ Sbjct: 477 RSPLREREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAV 535 Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615 + ++ + T G++Y + L S RG GE + + L + + KLL Sbjct: 536 KGKSNQPVVFIDTTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVEHMLMEGDDQKLL 595 Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--KLVVKVTGDHVAVVGENRKLLIF 673 + S G F+ ++++A R GK + + + LV++ D + + ++L+F Sbjct: 596 MASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPLVIEDEHDMLLAITLAGRMLMF 655 Query: 674 SIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDL 726 +D +P++S+GKG ++ + D G++ + LT I R +L Sbjct: 656 PVDSLPQLSKGKGNKIINIPSAEAAKGDDGLAHLYVLPPQSTLT-IHVGKRKIKLRPEEL 714 Query: 727 LGWLGKRGGVGSLVPKGFPR 746 +G+RG G+L+ +G R Sbjct: 715 QKVVGERGRRGTLM-RGLQR 733 >gi|62181688|ref|YP_218105.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|62129321|gb|AAX67024.1| DNA topoisomerase IV, subunit A [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] Length = 749 Score = 514 bits (1325), Expect = e-143, Method: Compositional matrix adjust. Identities = 272/740 (36%), Positives = 447/740 (60%), Gaps = 29/740 (3%) Query: 23 RFALEE----RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78 R AL E YL Y++ I +RA+P + DG KPV RRI++AMSE+GL+ A FKKSAR Sbjct: 4 RLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSART 63 Query: 79 VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMT 137 VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S AA RYTE+R++ Sbjct: 64 VGDVLGKYHPHGDIACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLS 123 Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197 + AEL+L + + D+ ++ EP + P++ PN+L NGT+GIAVGMAT IP HN++ Sbjct: 124 KYAELLLSELGQGTADWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLR 183 Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257 E+ +AA+ LI+ P+ ++++LL+ + GPD+PT I+ R I + Y GRG R+RA W Sbjct: 184 EVAKAAITLIEQPKTTLDQLLDIVQGPDYPTEAEIITPRAEIRKIYENGRGSVRMRAVWT 243 Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFP 315 E+ +V++ +P+QV ++++E+IA + K++P+++D+RDES + R+V+ P Sbjct: 244 KED-----GAVVISALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVP 298 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 ++ +D + +M +F +D+E + +N+N++ + P V L IL EWLA RR+ + RR Sbjct: 299 RSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEWLAFRRDTVRRR 358 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435 ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF ++E Q +AIL L+ Sbjct: 359 LNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGISETQAEAILELK 418 Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495 LR L KLEE +I+ E D L E++++ +L S ++ + E++ + + R Sbjct: 419 LRHLAKLEEMKIRGEQDELEKERDQLQGILASERKMNTLLKKELQADADAYGDD-----R 473 Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555 R+ E A KA + M+ EP+T+V+S GW+RS K H +D L++K GDS K A+ Sbjct: 474 RSPLREREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAV 532 Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615 + ++ + T G++Y + L S RG GE + + L + + KLL Sbjct: 533 KGKSNQPVVFIDTTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVEHMLMEGDDQKLL 592 Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--KLVVKVTGDHVAVVGENRKLLIF 673 + S G F+ ++++A R GK + + + LV++ D + + + ++L+F Sbjct: 593 MASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPLVIEDEHDMLLAITQAGRMLMF 652 Query: 674 SIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDL 726 +D +P++S+GKG ++ + D G++ + LT I R +L Sbjct: 653 PVDSLPQLSKGKGNKIINIPSAEAAKGDDGLAHLYVLPPQSTLT-IHVGKRKIKLRPEEL 711 Query: 727 LGWLGKRGGVGSLVPKGFPR 746 +G+RG G+L+ +G R Sbjct: 712 QKVVGERGRRGTLM-RGLQR 730 >gi|327395262|dbj|BAK12684.1| topoisomerase IV subunit A ParC [Pantoea ananatis AJ13355] Length = 757 Score = 514 bits (1325), Expect = e-143, Method: Compositional matrix adjust. Identities = 278/750 (37%), Positives = 445/750 (59%), Gaps = 34/750 (4%) Query: 12 LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71 L ++ + ++L E YL Y++ I +RA+P + DG KPV RRI++AMSE+GL+ A Sbjct: 4 LTQDGAERLALHTFTENAYLNYSMYVIMDRALPYIGDGLKPVQRRIVYAMSELGLNATAK 63 Query: 72 FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYR 130 FKKSAR VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S AA R Sbjct: 64 FKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMR 123 Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190 YTE+R+++ AE++L + + D+ ++ EP + P++ PN+L NGT+GIAVGMAT Sbjct: 124 YTESRLSKYAEVLLGELGQGTADWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATD 183 Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250 IP HN++E+ +AA+ALID+P+ S++ LLE + GPDFPT I+ R+ I + Y+ GRG Sbjct: 184 IPPHNLREVAQAAIALIDDPKTSLDALLEIVQGPDFPTEAEIITPRDEIRKIYQNGRGSV 243 Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-- 308 R RA W E+ +V+T +P+QV +R++E+IA + K++P++ED+RDES + Sbjct: 244 RQRAVWKKED-----GEVVITALPHQVSGARVLEQIANQMRNKKLPMVEDLRDESDHENP 298 Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368 R+V+ P++ +D D +M +F +D+E + +N+N++ + P V L IL EWL R Sbjct: 299 TRLVIVPRSNRVDLDQVMNHLFATTDLEKSYRINLNMIGLDNRPAVKNLLEILSEWLVFR 358 Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQV 428 R+ + RR ++R+ + RR+ IL GLL+A+LNIDE+I IIR ED+PKPV++SRF ++E Q Sbjct: 359 RDTVRRRLNYRLDRVLRRLHILDGLLVAFLNIDEVIHIIRTEDEPKPVLMSRFDISETQA 418 Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488 +AIL L+LR L KLEE +I+ E L E++++ ++L S ++ + KE+ + Sbjct: 419 EAILELKLRHLAKLEEMKIRGEQSELEKERDQLQAILASERKMNTLLK------KELQAD 472 Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548 S + G R + KA + ++ EP+T+V+S GW+RS K H +D + L +K G Sbjct: 473 SNNFGDDRRSPLREREEAKALSETELVPSEPVTIVLSQMGWVRSAKGHDIDPAGLSYKAG 532 Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608 DS A + + + + G++YTL +L S RG GE + + + + Sbjct: 533 DSYLAAARGKSNQPVAFIDSTGRSYTLDPTSLPSARGQGEPLTGKLTPPPGAVMEQVLME 592 Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--KLVVKVTGDHVAVVGE 666 +LL+ S G FI +++I+ R GK L + ++ + V D + + + Sbjct: 593 PEEQRLLMASDAGYGFICTFNDLISRNRAGKALLTLPENARVMTPMAVHHEDDMLLAITQ 652 Query: 667 NRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTW--IDSAGRSYN---- 720 ++L+F + ++P+MS+GKG ++ S I + L W I G + Sbjct: 653 AGRMLMFPVGELPQMSKGKGNKIIS-----IPSADAASGADKLAWLMILPPGSAITLHVG 707 Query: 721 ------RSENDLLGWLGKRGGVGSLVPKGF 744 RSE +L + RG G+L+P+G Sbjct: 708 KRKLLLRSE-ELQKFRADRGRRGTLLPRGL 736 >gi|90407395|ref|ZP_01215580.1| DNA topoisomerase IV subunit A [Psychromonas sp. CNPT3] gi|90311546|gb|EAS39646.1| DNA topoisomerase IV subunit A [Psychromonas sp. CNPT3] Length = 756 Score = 514 bits (1325), Expect = e-143, Method: Compositional matrix adjust. Identities = 280/754 (37%), Positives = 451/754 (59%), Gaps = 25/754 (3%) Query: 6 ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65 +S+ L + ++ + L EE YL Y++ I +RA+P + DG KPV RRII AMSE+G Sbjct: 1 MSDKQNLSLQGIEQLPLAKFTEEAYLNYSMYVIMDRALPHIGDGLKPVQRRIIFAMSELG 60 Query: 66 LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124 L + KKSAR VG+V+GK HPHGD + Y+++V +AQPF RYPLI GQGN+G D Sbjct: 61 LSALSKHKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLIDGQGNWGAPDDPK 120 Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184 S AA RYTE+R+++ +EL+L + + D++ ++ EP + P++ P++L NG +GIA Sbjct: 121 SFAAMRYTESRLSKFSELLLSEIAQGTTDWKPNFDGTLQEPELLPARLPHILLNGITGIA 180 Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244 VGMAT +P HN++E+ EA L +ID+P+ ++ +LE++ GPD+PT I+ R I Y Sbjct: 181 VGMATDVPPHNLREVAEACLHIIDHPKATLSDILEFVQGPDYPTEAEIITPRHEIKRIYT 240 Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304 GRG F+ RA + +EE IV++ +P++V ++++ IA+ +I K++P++ D+RDE Sbjct: 241 SGRGSFKSRAVYHMEE-----GDIVISALPHRVSGGKILKDIAKQMIDKKLPMVADLRDE 295 Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362 S + R+V+ P+++ +D + LM +F +D+E +N+N++ + + PQV L IL Sbjct: 296 SDRNHPTRLVIVPRSKRIDTEALMHHLFASTDLEVNHKVNLNMIGLDKRPQVKGLLKILN 355 Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422 EWL +R+ + RR FR+ I+ R+ +L+GLLIAYLNIDE+I IIRN D K +++RF Sbjct: 356 EWLVYRKRTVRRRLQFRLDKIETRLHLLEGLLIAYLNIDEVIEIIRNYDDSKAELITRFD 415 Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482 L+E Q AIL ++LR L KLEE QI+SE+ +L EK+K+ LLNS ++++N + Sbjct: 416 LSERQAHAILEIKLRQLAKLEEIQIRSEMSDLNTEKDKLLLLLNS-ERRFNTLLK----- 469 Query: 483 KEIFSKSTDLG-RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS 541 KEI + + + G RR+ E A KA ++ ++ E I+V++S +GWIRS K H VD Sbjct: 470 KEIKADALNYGDARRSPLVERLEA-KALTEKELLPNEQISVILSRQGWIRSAKGHDVDAQ 528 Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD 601 AL++K GD I+ + + + G+AY+L A +L S R GE + + N Sbjct: 529 ALNYKTGDEFLISAQGCSNQSAIFIDASGRAYSLDAHSLPSARSQGEPLTGRFNQNEQCA 588 Query: 602 IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--- 658 V+ + D + ++ S G FI + S+I + + GK + +S + V K++ Sbjct: 589 FVSVLLGDDNDQYIISSDHGYGFIAKFSDINSRNKNGKALINLSENAYLLPVQKLSNNAD 648 Query: 659 DHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISD----VICFKIC--EGLTWI 712 D + ++LIF ++ +P +SRGKG ++ + + V +I EG + Sbjct: 649 DLCLTISNEGRMLIFPVNSLPNLSRGKGNKMINIMGAKATKREEFVTMLRIIPKEGSVTL 708 Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746 + R +DL+ + G+RG G +P+G R Sbjct: 709 HAGKRKLTLKASDLVAYQGERGRRGGKLPRGLQR 742 >gi|255321009|ref|ZP_05362182.1| DNA topoisomerase IV, A subunit [Acinetobacter radioresistens SK82] gi|262379901|ref|ZP_06073056.1| DNA topoisomerase IV, A subunit [Acinetobacter radioresistens SH164] gi|255301973|gb|EET81217.1| DNA topoisomerase IV, A subunit [Acinetobacter radioresistens SK82] gi|262298095|gb|EEY86009.1| DNA topoisomerase IV, A subunit [Acinetobacter radioresistens SH164] Length = 739 Score = 514 bits (1325), Expect = e-143, Method: Compositional matrix adjust. Identities = 276/730 (37%), Positives = 434/730 (59%), Gaps = 17/730 (2%) Query: 27 EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86 E+ YL YA+ I +RA+P + DG KPV RRI++AMSE+GL KKSAR VG+V+GK Sbjct: 19 EQAYLNYAMYVIMDRALPHISDGLKPVQRRIVYAMSELGLKHSGKPKKSARTVGDVLGKY 78 Query: 87 HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQVAELILQ 145 HPHGD + Y+++V +AQPF RYP I GQGN+G+ D S AA RYTEA+++Q +E++L Sbjct: 79 HPHGDSACYEAMVLMAQPFSYRYPFIEGQGNWGSPDDPKSFAAMRYTEAKLSQYSEVLLS 138 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 + + V+++D ++ EPV P++ PN+L NGT+GIAVGMAT IP HN++E+ + +A Sbjct: 139 ELGQGTVEWQDNFDGSLKEPVTLPARVPNILMNGTTGIAVGMATDIPPHNLREVIKGTIA 198 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265 LI NP S KL EYI GPD PT I+ S++ +++ GRG +R+RA + VE+ Sbjct: 199 LIRNPNTSEAKLAEYIPGPDLPTKAEIITSKDELLKIQSTGRGSYRMRAVYTVEKNE--- 255 Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES--AEDVRIVLFPKNRSLDPD 323 I++TE+PYQV S++I +IA+ + AK++PL+ D+RDES R+V+ ++ +D D Sbjct: 256 --IIITELPYQVSGSKIITQIADQMQAKKLPLVSDLRDESDHVNPTRLVIVLRSNRVDAD 313 Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383 +M +F +D+E+ + +N+N++ PQV + IL EW+ R+E + RR + + I Sbjct: 314 TVMSHLFATTDLESSYRVNLNMIGADGRPQVKSIRKILLEWIGIRKETVTRRLQYHLNKI 373 Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLE 443 ++R+ IL GLLIAYL+ID +I IIR ED PK V++ F + E Q +AIL L+LR L KL+ Sbjct: 374 EKRLHILAGLLIAYLDIDTVIRIIREEDHPKAVLIQTFKIDETQAEAILELKLRHLAKLQ 433 Query: 444 EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVS 503 E +I+ E D L A I L + + N I E++E + F RR+ E Sbjct: 434 EMEIRQEQDELSARAALIREQLANPESLKNLIIGELKEDAKKFGD-----ERRSPIVERE 488 Query: 504 RADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRI 563 A + +Q +I EP+TV++S GWIRS K VD L+++ GD + R+ Sbjct: 489 GAVQMR-EQDLIPAEPVTVILSEAGWIRSAKGADVDAEKLNYRAGDQYLSHASGKSNQRV 547 Query: 564 LLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNA 623 +L G++Y L +L S RG GE + + + + V + +++ +SSKG Sbjct: 548 YILDETGRSYALAINSLPSARGLGEPLSSKLSPANGVSFIQILVEEDDQEIIAISSKGYG 607 Query: 624 FIVEESEIIANTRKGKTFLKVSSEEK-MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMS 682 F + ++ N + GK FL + K + L+V H+A++ + +LL+ + ++P ++ Sbjct: 608 FKTQAKQLDTNAKAGKAFLSIPEGGKALPLLVNPDCSHLALLTDTGRLLVLPVSELPSLN 667 Query: 683 RGKGVRL-QSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVP 741 +GKG +L Q +D + + + E + I + + N DL +LGKR G L+P Sbjct: 668 KGKGNKLIQLEQDEQLLSMTTLNLNEIIQVI-AGQKILNIKPGDLDKYLGKRASKGQLLP 726 Query: 742 KGFPRSGKFL 751 +G+ + + L Sbjct: 727 RGYQKVNRLL 736 >gi|16766474|ref|NP_462089.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|167990276|ref|ZP_02571376.1| DNA topoisomerase IV, A subunit [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|197265491|ref|ZP_03165565.1| DNA topoisomerase IV, A subunit [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|20141710|sp|P26973|PARC_SALTY RecName: Full=DNA topoisomerase 4 subunit A; AltName: Full=Topoisomerase IV subunit A gi|16421730|gb|AAL22048.1| DNA topoisomerase IV, subunit A [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|197243746|gb|EDY26366.1| DNA topoisomerase IV, A subunit [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|205331166|gb|EDZ17930.1| DNA topoisomerase IV, A subunit [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|261248304|emb|CBG26141.1| topoisomerase IV subunit A [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267995364|gb|ACY90249.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301159728|emb|CBW19247.1| topoisomerase IV subunit A [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|321225853|gb|EFX50907.1| Topoisomerase IV subunit A [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|332990040|gb|AEF09023.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 752 Score = 514 bits (1324), Expect = e-143, Method: Compositional matrix adjust. Identities = 272/740 (36%), Positives = 448/740 (60%), Gaps = 29/740 (3%) Query: 23 RFALEE----RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78 R AL E YL Y++ I +RA+P + DG KPV RRI++AMSE+GL+ A FKKSAR Sbjct: 7 RLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKFKKSART 66 Query: 79 VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMT 137 VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S AA RYTE+R++ Sbjct: 67 VGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLS 126 Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197 + AEL+L + + D+ ++ EP + P++ PN+L NGT+GIAVGMAT IP HN++ Sbjct: 127 KYAELLLSELGQGTADWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLR 186 Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257 E+ +AA+ LI+ P+ ++++LL+ + GPD+PT I+ R I + Y GRG R+RA W Sbjct: 187 EVAKAAITLIEQPKTTLDQLLDIVQGPDYPTEAEIITPRAEIRKIYENGRGSVRMRAVWT 246 Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFP 315 E+ +V++ +P+QV ++++E+IA + K++P+++D+RDES + R+V+ P Sbjct: 247 KED-----GAVVISALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVP 301 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 ++ +D + +M +F +D+E + +N+N++ + P V L IL EWLA RR+ + RR Sbjct: 302 RSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEWLAFRRDTVRRR 361 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435 ++R++ + +R+ IL+GLL+A+LNIDE+I IIR+ED+PKP ++SRF ++E Q +AIL L+ Sbjct: 362 LNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRSEDEPKPALMSRFGISETQAEAILELK 421 Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495 LR L KLEE +I+ E D L E++++ +L S ++ + E++ + + R Sbjct: 422 LRHLAKLEEMKIRGEQDELEKERDQLQGILASERKMNTLLKKELQADADAYGDD-----R 476 Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555 R+ E A KA + M+ EP+T+V+S GW+RS K H +D L++K GDS K A+ Sbjct: 477 RSPLREREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAV 535 Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615 + ++ + T G++Y + L S RG GE + + L + + KLL Sbjct: 536 KGKSNQPVVFIDTTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVEHMLMEGDDQKLL 595 Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--KLVVKVTGDHVAVVGENRKLLIF 673 + S G F+ ++++A R GKT + + + LV++ D + + + ++L+F Sbjct: 596 MASDAGYGFVCTFNDLVARNRAGKTLITLPENAHVMPPLVIEDEHDMLLAITQAGRMLMF 655 Query: 674 SIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDL 726 +D +P++S+GKG ++ + D G++ + LT I R +L Sbjct: 656 PVDSLPQLSKGKGNKIINIPSAEAAKGDDGLAHLYVLPPQSTLT-IHVGKRKIKLRPEEL 714 Query: 727 LGWLGKRGGVGSLVPKGFPR 746 +G+RG G+L+ +G R Sbjct: 715 QKVVGERGRRGTLM-RGLQR 733 >gi|167855632|ref|ZP_02478391.1| DNA topoisomerase IV subunit A [Haemophilus parasuis 29755] gi|167853259|gb|EDS24514.1| DNA topoisomerase IV subunit A [Haemophilus parasuis 29755] Length = 747 Score = 514 bits (1324), Expect = e-143, Method: Compositional matrix adjust. Identities = 273/737 (37%), Positives = 444/737 (60%), Gaps = 25/737 (3%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 E V+ + ++ E+ YL Y++ I +RA+P + DG KPV RRII+AMSE+GL+ A +KK Sbjct: 8 EGVEQMPIKRFTEDAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAMSELGLNAAAKYKK 67 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTE 133 SAR VG+V+GK HPHGD + Y+++V +AQPF RYPLI GQGN+G D S AA RYTE Sbjct: 68 SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLIDGQGNWGAPDDPKSFAAMRYTE 127 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 ++++++AE++L + + VD++ ++ EP P++ P++L NGT+GIAVGMAT IP Sbjct: 128 SKLSKMAEILLGELGQGTVDYQPNFDGSLEEPKYLPARLPHILLNGTTGIAVGMATDIPP 187 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E+ A++ L+DNP S+ +L+ + GPD+PT I+ R I + Y GRG ++R Sbjct: 188 HNINELAAASVKLLDNPTASLSDILDVVQGPDYPTEAEIITPRSEIAKIYEQGRGSIKMR 247 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRI 311 A W EE IV+ +P+Q S++IE+IA + K++P+++DIRDES + +RI Sbjct: 248 AVWKREENN-----IVINALPHQASPSKVIEQIATQMRNKKLPMVDDIRDESDHENPIRI 302 Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371 VL P++ +D D LM+ +F +D+E + +NMN++ + P V L IL EWLA RR Sbjct: 303 VLEPRSNRIDYDGLMDHLFATTDLEKSYRINMNMIGLDSKPAVKNLLTILTEWLAFRRTT 362 Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431 + RR +FR+ I R+ IL+GL+IA+LN+DE+I IIRNED PK +++RF L++ Q +AI Sbjct: 363 VTRRLNFRLDKIISRLHILEGLMIAFLNLDEVIEIIRNEDNPKAELIARFQLSDEQAEAI 422 Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491 LNLRLR L KLEE+++K+E L E+E + +L S ++ N I EI + F+ Sbjct: 423 LNLRLRHLAKLEEHELKAEQQKLEEEREHLQGILGSERRLNNLIKKEIEADAKAFASP-- 480 Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551 RR+ E + A KA + + EP+TV++S +GW+R K H +D+ L +K GDS Sbjct: 481 ---RRSPLVERAEA-KAISESDLTPTEPVTVILSEKGWVRCAKGHDIDVQNLSYKAGDSY 536 Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611 + + ++ + + G++Y L +L S R GE I I L + + + + Sbjct: 537 LAHAYGKSNQPVVFIDSTGRSYALDPLSLPSARSQGEPITGKISLPDGATVQCVLMAEES 596 Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVAVVGENR 668 K+L+ S G FI + ++++ + GK + ++ K+ +L+ + + + + Sbjct: 597 RKVLMASDSGYGFICQFEDLVSRNKAGKAVISLTENAKVLPPQLLKEGEENLLVAMSNTG 656 Query: 669 KLLIFSIDQIPEMSRGKGVRL-----QSYKDGG--ISDVICFKICEGLTWIDSAGRSYNR 721 ++L+F + ++PE+S+GKG ++ Q+ K+ +S ++ L ++ S R Sbjct: 657 RVLVFPVSELPELSKGKGNKIINISAQAAKERADLLSRLLIINPTSSLVFV-SGKRKITL 715 Query: 722 SENDLLGWLGKRGGVGS 738 D+ + G+R G+ Sbjct: 716 KPTDIEHYRGERARKGT 732 >gi|191167552|ref|ZP_03029364.1| DNA topoisomerase IV, A subunit [Escherichia coli B7A] gi|190902409|gb|EDV62146.1| DNA topoisomerase IV, A subunit [Escherichia coli B7A] Length = 752 Score = 514 bits (1324), Expect = e-143, Method: Compositional matrix adjust. Identities = 272/740 (36%), Positives = 445/740 (60%), Gaps = 29/740 (3%) Query: 23 RFALEE----RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78 R AL E YL Y++ I +RA+P + DG KPV RRI++AMSE+GL+ A FKKSAR Sbjct: 7 RLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSART 66 Query: 79 VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMT 137 VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S AA RYTE+R++ Sbjct: 67 VGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLS 126 Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197 + +EL+L + + D+ ++ EP + P++ PN+L NGT+GIAVGMAT IP HN++ Sbjct: 127 KYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLR 186 Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257 E+ +AA+ALID P+ ++++LL+ + GPD+PT I+ SR I + Y GRG R+RA W Sbjct: 187 EVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWK 246 Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFP 315 E+ +V++ +P+QV +R++E+IA + K++P+++D+RDES + R+V+ P Sbjct: 247 KED-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVP 301 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 ++ +D D +M +F +D+E + +N+N++ + P V L IL EWL RR+ + RR Sbjct: 302 RSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRR 361 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435 ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF LTE Q +AIL L+ Sbjct: 362 LNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAEAILELK 421 Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495 LR L KLEE +I+ E E++++ +L S ++ N + E++ + + R Sbjct: 422 LRHLAKLEEMKIRGEQSEREKERDQLQGILASERKMNNLLKKELQADAQAYGDD-----R 476 Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555 R+ E A KA + M+ EP+T+V+S GW+RS K H +D L++K GDS K A+ Sbjct: 477 RSPLQEREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAV 535 Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615 + ++ + + G++Y + L S RG GE + + L + + KLL Sbjct: 536 KGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMESDDQKLL 595 Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--KLVVKVTGDHVAVVGENRKLLIF 673 + S G F+ ++++A R GK + + + +V++ D + + + ++L+F Sbjct: 596 MASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMF 655 Query: 674 SIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDL 726 + +P++S+GKG ++ + + G++ + LT I R +L Sbjct: 656 PVSDLPQLSKGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLT-IHVGKRKIKLRPEEL 714 Query: 727 LGWLGKRGGVGSLVPKGFPR 746 G+RG G+L+ +G R Sbjct: 715 QKVTGERGRRGTLM-RGLQR 733 >gi|134094033|ref|YP_001099108.1| DNA topoisomerase IV subunit A [Herminiimonas arsenicoxydans] gi|133737936|emb|CAL60981.1| DNA topoisomerase 4 subunit A (Topoisomerase IV subunit A) [Herminiimonas arsenicoxydans] Length = 776 Score = 514 bits (1324), Expect = e-143, Method: Compositional matrix adjust. Identities = 276/695 (39%), Positives = 417/695 (60%), Gaps = 32/695 (4%) Query: 18 KAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSAR 77 ++++L E YL YA+S +K RA+PD+ DG KPV RRI+ AM+E+GL+ A +KSA Sbjct: 18 ESLTLATFAERAYLDYAISVVKGRALPDVCDGQKPVQRRILFAMNELGLNSAAKPRKSAA 77 Query: 78 IVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMT 137 +VG+V+GKLHPHGDQSVYD+LVR+AQ F RYPLI GQGNFG+ DGD AAA RYTEAR+T Sbjct: 78 VVGDVLGKLHPHGDQSVYDALVRMAQDFSLRYPLIDGQGNFGSRDGDGAAAMRYTEARLT 137 Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197 +A+L+++ +D VDF+ Y+ EP + PS+ P +L NG SGIAVGMAT IPSHN++ Sbjct: 138 PIAKLLMEEIDMGTVDFQPNYDGSTEEPKLLPSRLPFVLLNGASGIAVGMATEIPSHNLR 197 Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257 E+ +AA+ALI NP+++ E+L+ + GPDFP GG I+ S +I + YR GRG +VRA W Sbjct: 198 EVAQAAVALIRNPKLTHEELVAIVPGPDFPGGGQIITSPTAISDIYRSGRGSVKVRATWK 257 Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELI-----IAKR-------------IPLLE 299 +E++ RG W VVTE+P+ R++E+I EL + K+ + +L+ Sbjct: 258 IEDMARGQWQAVVTELPHGTSSQRVLEEIEELTNPKIRLGKKSLSPEQLALKQTVLAMLD 317 Query: 300 DIRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPL 357 +RDES D VR+V PK+++ D + + +ET +N+ ++ P+ L Sbjct: 318 TVRDESGRDAPVRLVFEPKSKNQDQTEFTNMLLAHTSLETSVSINLVMIGGDGKPRQKAL 377 Query: 358 DGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM 417 IL+EW+ R + RRS F++Q ++ R+ IL+G LNID++I IIR D+PKP + Sbjct: 378 GDILREWVDFRFTTITRRSQFKLQKVNDRIHILEGREAILLNIDKVIKIIRESDEPKPAL 437 Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477 + F L+E Q D IL +RLR L +LE +I+ EL L +EK + LL+ N + Sbjct: 438 MDAFRLSERQADDILEIRLRQLARLETIKIQQELAELRSEKSTLQDLLD------NPSSM 491 Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHS 537 + +KEI + G +R T EV A+KA ++ +I+ EP+TVVIS +GW+R+ H Sbjct: 492 KRLVIKEIEADEKQFGDKRRTLIEV--AEKAVVETRVID-EPVTVVISQKGWVRARTGHG 548 Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLN 597 D + FK D+L T D +L+ ++G+ Y++ L RG G I L++L Sbjct: 549 HDAAQFTFKASDALYDTFECRTVDTLLVFGSNGRIYSVAVAALPGARGDGVPITTLVELA 608 Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV--SSEEKMKLVVK 655 ++ F + LL+ S+ G F + ++++ TR GK F+ + E + Sbjct: 609 SGTRVLHYFAGPADVTLLLASTAGYGFTAKSGDMVSRTRSGKAFITLDEGDEPLTPRPIF 668 Query: 656 VTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRL 689 +A + E ++L+F ID+I ++ G+GV L Sbjct: 669 AGASAIACLSEKGRVLVFGIDEIKSLTAGGRGVIL 703 >gi|188532595|ref|YP_001906392.1| DNA topoisomerase IV subunit A [Erwinia tasmaniensis Et1/99] gi|188027637|emb|CAO95487.1| DNA topoisomerase IV subunit A [Erwinia tasmaniensis Et1/99] Length = 758 Score = 514 bits (1324), Expect = e-143, Method: Compositional matrix adjust. Identities = 273/746 (36%), Positives = 442/746 (59%), Gaps = 22/746 (2%) Query: 12 LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71 L + + ++L E YL Y++ I +RA+P + DG KPV RRI++AMSE+GL A Sbjct: 4 LTPDGAERLALHEFTENAYLKYSMYVIMDRALPYIGDGLKPVQRRIVYAMSELGLSNSAK 63 Query: 72 FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYR 130 FKKSAR VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S AA R Sbjct: 64 FKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMR 123 Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190 YTE+R+++ AE++L + + VD+ ++ EP + P++ PN+L NGT+GIAVGMAT Sbjct: 124 YTESRLSKYAEVLLGELGQGTVDYVQNFDGTMQEPSMLPARLPNILLNGTTGIAVGMATD 183 Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250 IP HN++E+ +AA+ LID+P+ ++++LL+ + GPD+PT I+ R I + Y+ GRG Sbjct: 184 IPPHNLREVAKAAITLIDSPKTTLDELLDIVQGPDYPTEAEIITPRSEIRKIYQNGRGSV 243 Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-- 308 R+RA W EE +V+T +P+QV +R++E+IA + K++P++ED+RDES + Sbjct: 244 RMRAVWKKEE-----GDVVITALPHQVSGARVLEQIAAQMRNKKLPMVEDLRDESDHENP 298 Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368 R+V+ P++ +D D +M +F +D+E + +N+N++ + P V L IL EWL R Sbjct: 299 TRLVIVPRSNRVDMDQVMNHLFATTDLERSYRINLNMIGLNNRPAVKNLLEILSEWLVFR 358 Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQV 428 R+ + RR + R++ + +R+ IL GLL+A+LNIDE+I IIR ED+PKPV++SRF ++E Q Sbjct: 359 RDTVRRRLNHRLEKVLKRLHILAGLLVAFLNIDEVIEIIRGEDEPKPVLMSRFDISETQA 418 Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488 +AIL L+LR L KLEE +I+ E D L E+ ++ LL S ++ + E++ + + Sbjct: 419 EAILELKLRHLAKLEEMKIRGEQDELEKERAHLEGLLASERKMNTLLKKELQADSDAYGD 478 Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548 RR+ E A KA + ++ EP+T+V+S GW+RS K H +D + L +K G Sbjct: 479 D-----RRSPLREREEA-KAIGEHELMPSEPVTIVLSQSGWVRSAKGHDIDPAGLSYKAG 532 Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608 D A + ++ + + G++Y L L S RG GE + + + + Sbjct: 533 DGYLGAARGKSNQPVVFIDSTGRSYALDPVTLPSARGQGEPLTGKLTPPPGAVVEQVLMA 592 Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--KLVVKVTGDHVAVVGE 666 D T KLL+ S G F+ +++++ R GK L + + + L + D + + Sbjct: 593 DDTQKLLMASDAGYGFVCTFADLVSRNRAGKALLTLPANANVMAPLAIHSNDDLLLAITA 652 Query: 667 NRKLLIFSIDQIPEMSRGKG---VRLQSYKDGGISDVICFKIC---EGLTWIDSAGRSYN 720 ++L+F + +P++S+GKG V + S + D + + + E + R Sbjct: 653 AGRMLMFPVGDLPQLSKGKGNKIVSIPSAEAASGEDKLAWLLLLTPESDITLHVGKRKLT 712 Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPR 746 DL + +RG G+L+P+G R Sbjct: 713 LKAADLQKFRAERGRRGTLLPRGLQR 738 >gi|292486947|ref|YP_003529817.1| topoisomerase IV subunit A [Erwinia amylovora CFBP1430] gi|292900662|ref|YP_003540031.1| DNA topoisomerase IV subunit A [Erwinia amylovora ATCC 49946] gi|291200510|emb|CBJ47639.1| DNA topoisomerase IV subunit A [Erwinia amylovora ATCC 49946] gi|291552364|emb|CBA19409.1| topoisomerase IV subunit A [Erwinia amylovora CFBP1430] gi|312171015|emb|CBX79274.1| topoisomerase IV subunit A [Erwinia amylovora ATCC BAA-2158] Length = 758 Score = 514 bits (1324), Expect = e-143, Method: Compositional matrix adjust. Identities = 275/746 (36%), Positives = 444/746 (59%), Gaps = 22/746 (2%) Query: 12 LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71 L ++ + ++L E YL Y++ I +RA+P + DG KPV RRI++AMSE+GL A Sbjct: 4 LTQDGAERLALHKFTENAYLNYSMYVIMDRALPYIGDGLKPVQRRIVYAMSELGLSNTAK 63 Query: 72 FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYR 130 FKKSAR VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S AA R Sbjct: 64 FKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMR 123 Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190 YTE+R+++ AE++L + + VD+ ++ EP + P++ PN+L NGT+GIAVGMAT Sbjct: 124 YTESRLSKYAEVLLGELGQGTVDYVPNFDGTMQEPSMLPARLPNILLNGTTGIAVGMATD 183 Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250 IP HN++E+ +AA+ LID+P S+++LL+ + GPD+PT I+ R I + Y+ GRG Sbjct: 184 IPPHNLREVAKAAITLIDSPTTSLDELLDIVQGPDYPTEAEIITPRNEIRKIYQNGRGSV 243 Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-- 308 R+RA W EE +V+T +P+QV +R++E+IA + K++P++ED+RDES + Sbjct: 244 RMRAVWKKEE-----GDVVITALPHQVSGARVLEQIAAQMRNKKLPMVEDLRDESNHENP 298 Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368 R+V+ P+++ +D + +M +F +D+E + +N+N++ + P V L IL EWL R Sbjct: 299 TRLVIVPRSQRVDMEQVMNHLFATTDLERSYRINLNMIGLNNRPAVKNLLEILTEWLVFR 358 Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQV 428 R+ + RR + R++ + +R+ IL GLL+A+LNIDE+I IIR ED+PKPV++SRF ++E Q Sbjct: 359 RDTVRRRLNHRLEKVLKRLHILAGLLVAFLNIDEVIEIIRAEDEPKPVLMSRFDISEIQA 418 Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488 +AIL L+LR L KLEE +I+ E D L E+ ++ LL S ++ + E++ + + Sbjct: 419 EAILELKLRHLAKLEEMKIRGEQDELEKERAHLEGLLGSERKLNTLLKKELQADSDAYGD 478 Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548 RR+ E A KA + ++ EP+T+V+S GW+RS K H +D + L +K G Sbjct: 479 E-----RRSPLREREEA-KAIGEHELMPSEPVTIVLSQSGWVRSAKGHDIDPAGLSYKAG 532 Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608 DS A + ++ + + G++Y L L S RG GE + + + + Sbjct: 533 DSFLGAARGKSNQPVVFIDSTGRSYALDPVTLPSARGQGEPLTGKLTPPPGAVVEQVLMA 592 Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--KLVVKVTGDHVAVVGE 666 D T KLL+ S G F+ S++++ R GK L + S ++ L + D + + Sbjct: 593 DDTQKLLMASDAGYGFVCTFSDLVSRNRAGKALLTLPSNARVMAPLAIHRNDDLLLAITA 652 Query: 667 NRKLLIFSIDQIPEMSRGKG---VRLQSYKDGGISDVICFKIC---EGLTWIDSAGRSYN 720 ++L+F + +P++S+GKG + + S + D + + + E + R Sbjct: 653 AGRMLMFPVGDLPQLSKGKGNKIISIPSAEAASGEDKLAWLLLLTPENAITLYVGKRKLT 712 Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPR 746 DL + RG G+L+P+G R Sbjct: 713 LKAADLQKFRADRGRRGTLLPRGLQR 738 >gi|37678773|ref|NP_933382.1| DNA topoisomerase IV subunit A [Vibrio vulnificus YJ016] gi|37197514|dbj|BAC93353.1| topoisomerase IV, subunit A [Vibrio vulnificus YJ016] Length = 761 Score = 514 bits (1324), Expect = e-143, Method: Compositional matrix adjust. Identities = 269/687 (39%), Positives = 421/687 (61%), Gaps = 17/687 (2%) Query: 9 SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68 S + + V+ + +R E+ YL Y++ I +RA+P + DG KPV RRII+AMSE+GL Sbjct: 2 STEITYDGVEQLPMRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61 Query: 69 GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAA 127 A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S A Sbjct: 62 AAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFA 121 Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187 A RYTEA++++ A+++L + + V+++ ++ EP + P++ P++L NG +GIAVGM Sbjct: 122 AMRYTEAKLSKFADVLLGELGQGTVEWQPNFDGTMKEPKMLPARLPHILLNGVTGIAVGM 181 Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247 AT IP HNV+E+ +A + LIDNP + L++Y+ GPDFPT I+ + + YR GR Sbjct: 182 ATDIPPHNVREVADATIHLIDNPAAPLMDLMQYVKGPDFPTEAEIITPSSDLEKMYRSGR 241 Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307 G ++RA WC E GS IV+T +P+QV ++L+E+IA + AK++P++ED+RDES Sbjct: 242 GSVKMRAVWCKE----GS-DIVITALPHQVSGAKLLEQIAAQMRAKKLPMVEDLRDESDH 296 Query: 308 D--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365 + RIV+ P++ +D D LM +F +D+E + +N+N++ + PQV L IL EW+ Sbjct: 297 ENPTRIVIVPRSNRVDCDQLMNHLFASTDLEKSYRVNLNMIGLDNRPQVKGLVQILTEWI 356 Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425 RRE + R +R+ + R+ IL+GLLIAYLNIDE+I IIR ED PK V+++RF +T+ Sbjct: 357 TFRRETVRSRLQYRLDKVLARLHILEGLLIAYLNIDEVIEIIRTEDDPKAVLMARFGITD 416 Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485 Q DAIL+ +LR L KLEE +I+ E D L E++K++ LL S ++ + EIR E Sbjct: 417 IQADAILDTKLRHLAKLEEMKIRGEQDELEKERKKLEELLGSERRLNTLLKKEIRADAEK 476 Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545 F G R + V KA ++ ++ E ITVV+S +GWIR K H VD L + Sbjct: 477 F------GDDRRSPLVVREEAKALTERDLMPNEAITVVLSEKGWIRHAKGHEVDCQGLSY 530 Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605 K GDS + + +LL +DG++Y+L + L S RG GE I +++ I Sbjct: 531 KAGDSYLAHACGKSNQQAVLLGSDGRSYSLESHTLPSARGQGEPITGRLNITPGSSIRQV 590 Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVA 662 + + L+ S G F+ + S++++ R GK + + ++ V+ + D + Sbjct: 591 IMGEEEQLWLIGSDAGYGFVCKGSDLLSKNRSGKALVSLPENAEVMTPSAVLDLDNDDIL 650 Query: 663 VVGENRKLLIFSIDQIPEMSRGKGVRL 689 + ++L+F I +P++ +GKG ++ Sbjct: 651 AITNQGRMLMFPIKDLPQLGKGKGNKI 677 >gi|89075923|ref|ZP_01162298.1| DNA topoisomerase IV subunit A [Photobacterium sp. SKA34] gi|89048364|gb|EAR53942.1| DNA topoisomerase IV subunit A [Photobacterium sp. SKA34] Length = 758 Score = 514 bits (1324), Expect = e-143, Method: Compositional matrix adjust. Identities = 277/745 (37%), Positives = 444/745 (59%), Gaps = 25/745 (3%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 + V+ + LR E+ YL Y++ I +RA+P + DG KPV RRII+AMSE+GL A +KK Sbjct: 7 DGVEQLPLRKFTEDAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAMSELGLSATAKYKK 66 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTE 133 SAR VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S AA RYTE Sbjct: 67 SARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 126 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 +R+++ +E++L + + D+ ++ EP + P++ P++L NG +GIAVGMAT IP Sbjct: 127 SRLSRFSEVLLSELGQGTADWVPNFDGTMQEPKMLPARLPHILLNGVTGIAVGMATDIPP 186 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN +E+ AA+ +I+NP+ ++ L+E++ GPD+PT I+ S+ + + Y+ GRG R+R Sbjct: 187 HNAREVANAAVHMIENPKADLDALMEFVQGPDYPTEAEIITSKADLKKVYKSGRGSIRMR 246 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRI 311 A W E + IV+T +P+Q ++L+E+IA + AK++P++ED+RDES + RI Sbjct: 247 AVWHKE-----NGDIVITALPHQTSGAKLLEQIASQMRAKKLPMVEDLRDESDHENPTRI 301 Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371 V+ P++ +D + LM +F +D+E F N+N+L + PQV L I+ EWL +RR Sbjct: 302 VIVPRSNRIDCEQLMNHLFASTDLEKSFRANLNMLGLDGRPQVKGLVEIIAEWLEYRRTT 361 Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431 + RR +R+ ++ R+ IL+GLL AYLNIDE+I IIRNE+ PK +SRF L+ Q DAI Sbjct: 362 VRRRLQYRLDKVNARLHILEGLLAAYLNIDEVIEIIRNEEDPKAEFMSRFGLSAIQADAI 421 Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491 L ++LR L KLEE +I++E D L E+E+++ LL S ++ I KEI + + Sbjct: 422 LEIKLRQLAKLEEIKIRAEQDELAKEREQLEKLLGSERRLNTLIK------KEILADAEK 475 Query: 492 LG-RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDS 550 G RR+ E A KA ++ +I E ITVV+S +GWIR K H VD S+L++K GDS Sbjct: 476 YGDDRRSPLVEREEA-KALTERDLIPSEAITVVLSEKGWIRHAKGHEVDPSSLNYKSGDS 534 Query: 551 LKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDS 610 + + L +DG++Y L + +L S R GE I ++L ++ + + Sbjct: 535 YLAHARGKSNLPAIFLGSDGRSYALESHSLPSARSQGEPITGRLNLTPGTNMRQVLMAED 594 Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVAVVGEN 667 L+ S G FI + +++++ + GK L V + + V + D + + Sbjct: 595 DQIWLMASDAGYGFICKSTDMVSKNKSGKALLTVPENAAVLPPQPVADIENDQILAITNE 654 Query: 668 RKLLIFSIDQIPEMSRGKG---VRLQSYKDGGISDVICF-KICEGLTWID--SAGRSYNR 721 ++L+F I +P++ +GKG + + S + + + + + T + + R Sbjct: 655 GRMLLFPIKDLPQLGKGKGNKIINIPSARSKAREEFLSYLTVISADTHVTLYAGKRKLGL 714 Query: 722 SENDLLGWLGKRGGVGSLVPKGFPR 746 +DL + G+RG G+++P+G R Sbjct: 715 KPSDLYNFRGERGRRGAMLPRGLQR 739 >gi|327251806|gb|EGE63492.1| DNA topoisomerase IV, A subunit [Escherichia coli STEC_7v] Length = 752 Score = 514 bits (1324), Expect = e-143, Method: Compositional matrix adjust. Identities = 272/740 (36%), Positives = 445/740 (60%), Gaps = 29/740 (3%) Query: 23 RFALEE----RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78 R AL E YL Y++ I +RA+P + DG KPV RRI++AMSE+GL+ A FKKSAR Sbjct: 7 RLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSART 66 Query: 79 VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMT 137 VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S AA RYTE+R++ Sbjct: 67 VGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLS 126 Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197 + +EL+L + + D+ ++ EP + P++ PN+L NGT+GIAVGMAT IP HN++ Sbjct: 127 KYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLR 186 Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257 E+ +AA+ALID P+ ++++LL+ + GPD+PT I+ SR I + Y GRG R+RA W Sbjct: 187 EVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWK 246 Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFP 315 E+ +V++ +P+QV +R++E+IA + K++P+++D+RDES + R+V+ P Sbjct: 247 KED-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVP 301 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 ++ +D D +M +F +D+E + +N+N++ + P V L IL EWL RR+ + RR Sbjct: 302 RSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRR 361 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435 ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF LTE Q +AIL L+ Sbjct: 362 LNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAEAILELK 421 Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495 LR L KLEE +I+ E L E++++ +L S ++ + E++ + + R Sbjct: 422 LRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNKLLKKELQADAQAYGDD-----R 476 Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555 R+ E A KA + M+ EP+T+V+S GW+RS K H +D L++K GDS K A+ Sbjct: 477 RSPLQEREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAV 535 Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615 + ++ + + G++Y + L S RG GE + + L + + KLL Sbjct: 536 KGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMESDDQKLL 595 Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--KLVVKVTGDHVAVVGENRKLLIF 673 + S G F+ ++++A R GK + + + +V++ D + + + ++L+F Sbjct: 596 MASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMF 655 Query: 674 SIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDL 726 + +P++S+GKG ++ + + G++ + LT I R +L Sbjct: 656 PVSDLPQLSKGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLT-IHVGKRKIKLRPEEL 714 Query: 727 LGWLGKRGGVGSLVPKGFPR 746 G+RG G+L+ +G R Sbjct: 715 QKVTGERGRRGTLM-RGLQR 733 >gi|168238130|ref|ZP_02663188.1| DNA topoisomerase IV, A subunit [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|194735135|ref|YP_002116129.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|194710637|gb|ACF89858.1| DNA topoisomerase IV, A subunit [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197288972|gb|EDY28343.1| DNA topoisomerase IV, A subunit [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] Length = 752 Score = 514 bits (1324), Expect = e-143, Method: Compositional matrix adjust. Identities = 271/740 (36%), Positives = 447/740 (60%), Gaps = 29/740 (3%) Query: 23 RFALEE----RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78 R AL E YL Y++ I +RA+P + DG KPV RRI++AMSE+GL+ A FKKSAR Sbjct: 7 RLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSART 66 Query: 79 VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMT 137 VG+V+GK HPHGD++ Y+++V +AQPF RYPL+ GQGN+G D S AA RYTE+R++ Sbjct: 67 VGDVLGKYHPHGDRACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLS 126 Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197 + AEL+L + + D+ ++ EP + P++ PN+L NGT+GIAVGMAT IP HN++ Sbjct: 127 KYAELLLSELGQGTADWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLR 186 Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257 E+ +AA+ LI+ P+ ++++LL+ + GPD+PT I+ R I + Y GRG R+RA W Sbjct: 187 EVAKAAITLIEQPKTTLDQLLDIVQGPDYPTEAEIITPRAEIRKIYENGRGSVRMRAVWT 246 Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFP 315 E+ +V++ +P+QV ++++E+IA + K++P+++D+RDES + R+V+ P Sbjct: 247 KED-----GAVVISALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVP 301 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 ++ +D + +M +F +D+E + +N+N++ + P V L IL EWL RR+ + RR Sbjct: 302 RSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEWLVFRRDTVRRR 361 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435 ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF ++E Q +AIL L+ Sbjct: 362 LNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGISETQAEAILELK 421 Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495 LR L KLEE +I+ E D L E++++ +L S ++ + E++ + + R Sbjct: 422 LRHLAKLEEMKIRGEQDELEKERDQLQGILASERKMNTLLKKELQADSDAYGDD-----R 476 Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555 R+ E A KA + M+ EP+T+V+S GW+RS K H +D L++K GDS K A+ Sbjct: 477 RSPLREREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAV 535 Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615 + ++ + T G++Y + L S RG GE + + L + + KLL Sbjct: 536 KGKSNQPVVFIDTTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVEHMLMEGDDQKLL 595 Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--KLVVKVTGDHVAVVGENRKLLIF 673 + S G F+ ++++A R GK + + + LV++ D + + + ++L+F Sbjct: 596 MASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPLVIEDEHDMLLAITQAGRMLMF 655 Query: 674 SIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDL 726 +D +P++S+GKG ++ + D G++ + LT I R +L Sbjct: 656 PVDSLPQLSKGKGNKIINIPSAEAAKGDDGLAHLYVLPPQSTLT-IHVGKRKIKLRPEEL 714 Query: 727 LGWLGKRGGVGSLVPKGFPR 746 +G+RG G+L+ +G R Sbjct: 715 QKVVGERGRRGTLM-RGLQR 733 >gi|324018137|gb|EGB87356.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 117-3] Length = 752 Score = 514 bits (1323), Expect = e-143, Method: Compositional matrix adjust. Identities = 273/740 (36%), Positives = 445/740 (60%), Gaps = 29/740 (3%) Query: 23 RFALEE----RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78 R AL E YL Y++ I +RA+P + DG KPV RRI++AMSE+GL+ A FKKSAR Sbjct: 7 RLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSART 66 Query: 79 VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMT 137 VG+V+GK HPHGD + Y ++V +AQPF RYPL+ GQGN+G D S AA RYTE+R++ Sbjct: 67 VGDVLGKYHPHGDIACYAAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLS 126 Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197 + +EL+L + + D+ ++ EP + P++ PN+L NGT+GIAVGMAT IP HN++ Sbjct: 127 KYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLR 186 Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257 E+ +AA+ALID P+ ++++LL+ + GPD+PT I+ SR I + Y GRG R+RA W Sbjct: 187 EVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWK 246 Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFP 315 E+ +V++ +P+QV +R++E+IA + K++P+++D+RDES + R+V+ P Sbjct: 247 KED-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVP 301 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 ++ +D D +M +F +D+E + +N+N++ + P V L IL EWL RR+ + RR Sbjct: 302 RSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRR 361 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435 ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF LTE Q +AIL L+ Sbjct: 362 LNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAEAILELK 421 Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495 LR L KLEE +I+ E L E++++ +L S ++ N + E++ + + R Sbjct: 422 LRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDD-----R 476 Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555 R+ E A KA + M+ EP+T+V+S GW+RS K H +D L++K GDS K A+ Sbjct: 477 RSPLQEREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAV 535 Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615 + ++ + + G++Y + L S RG GE + + L + + KLL Sbjct: 536 KGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMESDDQKLL 595 Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--KLVVKVTGDHVAVVGENRKLLIF 673 + S G F+ ++++A R GK + + + +V++ D + + + ++L+F Sbjct: 596 MASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMF 655 Query: 674 SIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDL 726 + +P++S+GKG ++ + + G++ + LT I R +L Sbjct: 656 PVSDLPQLSKGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLT-IHVGKRKIKLRPEEL 714 Query: 727 LGWLGKRGGVGSLVPKGFPR 746 G+RG G+L+ +G R Sbjct: 715 QKVTGERGRRGTLM-RGLQR 733 >gi|77165745|ref|YP_344270.1| DNA topoisomerase IV subunit A [Nitrosococcus oceani ATCC 19707] gi|254434978|ref|ZP_05048486.1| DNA topoisomerase IV, A subunit [Nitrosococcus oceani AFC27] gi|76884059|gb|ABA58740.1| DNA topoisomerase IV subunit A [Nitrosococcus oceani ATCC 19707] gi|207091311|gb|EDZ68582.1| DNA topoisomerase IV, A subunit [Nitrosococcus oceani AFC27] Length = 747 Score = 514 bits (1323), Expect = e-143, Method: Compositional matrix adjust. Identities = 284/731 (38%), Positives = 439/731 (60%), Gaps = 25/731 (3%) Query: 27 EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86 E+ YL Y++ I +RA+P L DG KPV RRII+AMSE+GL GA +KKSAR VG+V+GK Sbjct: 19 EKAYLDYSMYVILDRALPHLGDGLKPVQRRIIYAMSELGLSAGAKYKKSARTVGDVLGKY 78 Query: 87 HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQVAELILQ 145 HPHGD + Y+++V +AQ F RYPLI+GQGN+G+ D S AA RYTEAR+ AEL+L Sbjct: 79 HPHGDSACYEAMVLMAQQFSYRYPLIAGQGNWGSPDDPKSFAAMRYTEARLAPFAELLLS 138 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 V + V++ ++ EP + P++ P++L NGT GIAVGMAT IP HN+ E+ A L Sbjct: 139 EVGQGTVNWAPNFDGTLQEPRLLPARVPHVLLNGTMGIAVGMATDIPPHNLHEVTAACLH 198 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265 L+ P ++ +L EY+ GPD+PT I+ ++V+ Y G+G R+RA++ VE+ Sbjct: 199 LLKYPNATVAELCEYLPGPDYPTEAEIITPSAALVKMYETGQGSVRLRAQYMVEQ----- 253 Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFPKNRSLDPD 323 IVV +P+QV +R++E+IA+ + AK++P+L D+RDES + R+VL P R +D + Sbjct: 254 GNIVVNALPHQVSGARVLEQIAQQMQAKKLPMLADLRDESDHENPTRLVLVPYARRMDVE 313 Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383 +M +F +D+E + +N+NV+ + PQV L +L EW R E L RR +R++ + Sbjct: 314 TVMSHLFATTDLERSYRVNLNVIGLDGRPQVKNLRDLLGEWFYFRIETLRRRFRYRLEKV 373 Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLE 443 + R+++L GLLIAYLNIDE+IAIIR+E+ PKPV+++RF L++ Q +AIL L+LR L +LE Sbjct: 374 EDRLQVLAGLLIAYLNIDEVIAIIRDEEAPKPVLMARFKLSDRQAEAILELKLRYLARLE 433 Query: 444 EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG-RRRTTFCEV 502 E +I++E L AE++ ++ +L S ++I +R+ E+ + + G RR+ E Sbjct: 434 ETKIRAENKALAAERKGLEKMLGS----ESRIKDLLRQ--ELLADAKKFGDARRSPIVER 487 Query: 503 SRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDR 562 S A +Q+++ E ITVV+S +GW+R+ KS V+ +AL ++ GDS + + + Sbjct: 488 SSATVLD-KQSLLPAELITVVLSEKGWVRAAKSQDVNPAALSYRTGDSYRASARGRSNQS 546 Query: 563 ILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGN 622 + L + G++YTLPA L S RG GE + + + + + + + L+ S+ G Sbjct: 547 AIFLDSTGRSYTLPAHGLPSARGQGEPLSGHLQVAPGAEFIAILLAEPEEFYLMASNAGY 606 Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---DHVAVVGENRKLLIFSIDQIP 679 F+ + + R GK L VS+ K V VT D VAV +LL+F + +P Sbjct: 607 GFLCQARHLYTKNRAGKAVLNVSAGAKALPPVPVTDRELDQVAVATNVGRLLLFPLRDLP 666 Query: 680 EMSRGKGVRLQSYKDG----GISDVICFKICE--GLTWIDSAGRSYNRSENDLLGWLGKR 733 ++RGKGV+L + G V + G + + R DL + G+R Sbjct: 667 FIARGKGVKLINISSTRLAQGQEAVRALAVVSQGGALQVFAGRRHLTLKSEDLEPYQGER 726 Query: 734 GGVGSLVPKGF 744 G +P+GF Sbjct: 727 ARRGLTLPRGF 737 >gi|317049570|ref|YP_004117218.1| DNA topoisomerase IV subunit A [Pantoea sp. At-9b] gi|316951187|gb|ADU70662.1| DNA topoisomerase IV, A subunit [Pantoea sp. At-9b] Length = 756 Score = 514 bits (1323), Expect = e-143, Method: Compositional matrix adjust. Identities = 273/747 (36%), Positives = 450/747 (60%), Gaps = 24/747 (3%) Query: 12 LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71 L ++ + ++L E YL Y++ I +RA+P + DG KPV RRI++AMSE+GL+ A Sbjct: 4 LTQDGAERLALHKFTENAYLNYSMYVIMDRALPYIGDGLKPVQRRIVYAMSELGLNASAK 63 Query: 72 FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYR 130 FKKSAR VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S AA R Sbjct: 64 FKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMR 123 Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190 YTE+R+++ AE++L + + VD+ ++ EP + P++ PN+L NGT+GIAVGMAT Sbjct: 124 YTESRLSKYAEILLSELGQGTVDYIPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATD 183 Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250 IP HN++E+ +AA+ LI+ P ++++LL+ + GPDFPT I+ R+ I + Y+ GRG Sbjct: 184 IPPHNIREVAQAAITLIEKPNTTLDELLDIVHGPDFPTEAEIITPRDEIRKIYQNGRGSI 243 Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-- 308 R RA W E+ +V+T +P+QV +R++E+IA + K++P++ED+RDES + Sbjct: 244 RQRAVWKKED-----GEVVITALPHQVSGARVLEQIAAQMRNKKLPMVEDLRDESDHENP 298 Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368 R+V+ P++ +D + +M +F +D+E + +N+N++ + P V L I+ EWL +R Sbjct: 299 TRLVIVPRSNRVDLEQVMNHLFATTDLEKSYRVNLNMIGLDNRPAVKNLLEIISEWLVYR 358 Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQV 428 R+ + RR ++R+ + RR+ IL+GLL+A+LNIDE+I IIR ED+PK V++SRF ++E Q Sbjct: 359 RDTVTRRLNYRLDRVLRRLHILEGLLVAFLNIDEVIHIIRTEDEPKAVLMSRFEISETQA 418 Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488 +AIL L+LR L KLEE +I+ E L E++++ ++L S ++ N + E++ + + Sbjct: 419 EAILELKLRHLAKLEEMKIRGEQAELEKERDQLQAILASDRKMSNLLKKELQADSQTYGD 478 Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548 RR+ E A KA + ++ EP+T+V+S GW+RS K H +D + L +K G Sbjct: 479 D-----RRSPLREREEA-KALSETDLVSAEPVTIVLSQMGWVRSAKGHDIDPAGLSYKAG 532 Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608 D+ A + + + + G++YTL +L S RG GE + + L + + Sbjct: 533 DNYLAAARGKSNQPVAFIDSTGRSYTLDPTSLPSARGQGEPLTGKLTLPPGAVMEQVLME 592 Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--KLVVKVTGDHVAVVGE 666 KLL+ S G FI +++++ R GK L + K+ + V D + + + Sbjct: 593 PDEQKLLMASDAGYGFICTFADLVSRNRSGKALLTLPENAKVMTPMAVNHEDDMLLAITQ 652 Query: 667 NRKLLIFSIDQIPEMSRGKG---VRLQSYKDGGISD----VICFKICEGLTWIDSAGRSY 719 ++L+F + ++P+MS+GKG + + S + SD ++ +T + Sbjct: 653 AGRMLMFPVGELPQMSKGKGNKIISIPSAEAAAGSDKLVWLLILPTGSAITLHVGKRKLV 712 Query: 720 NRSENDLLGWLGKRGGVGSLVPKGFPR 746 RSE +L + RG G+L+P+G R Sbjct: 713 LRSE-ELQKFRADRGRRGTLLPRGLQR 738 >gi|254427439|ref|ZP_05041146.1| DNA topoisomerase IV, A subunit [Alcanivorax sp. DG881] gi|196193608|gb|EDX88567.1| DNA topoisomerase IV, A subunit [Alcanivorax sp. DG881] Length = 745 Score = 514 bits (1323), Expect = e-143, Method: Compositional matrix adjust. Identities = 269/742 (36%), Positives = 439/742 (59%), Gaps = 23/742 (3%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 + ++ L+ E+ YL Y++ I +RA+P++ DG KPV RRI++AMSE+GL + +KK Sbjct: 3 DEFESFPLKEYTEKAYLDYSMYVILDRALPNIGDGLKPVQRRIVYAMSELGLKSTSKYKK 62 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTE 133 SAR VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G+ D S AA RYTE Sbjct: 63 SARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGSADDPKSFAAMRYTE 122 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 +++ AE++L + + V++ ++ EP + P++ PN+L NGT+GIAVGM+T IP Sbjct: 123 SKLAPYAEVLLSELGQGTVEWLPNFDGTMDEPKLLPARLPNVLLNGTTGIAVGMSTDIPP 182 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN++E+ A + L+ +P S++ L++YI GPDFPT ++ I+ Y G+G + R Sbjct: 183 HNLREVANACIHLLKDPGASLDDLMQYIKGPDFPTEAEVITPINDIIRMYAEGKGSLKQR 242 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRI 311 A + E+ IVVT +PYQV ++++E+IA+ + K++P++ D+RDES + R+ Sbjct: 243 AVYERED-----GDIVVTALPYQVSGAKVLEQIADQMNKKKLPMVSDLRDESDHENPTRL 297 Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371 V+ P++ +D + LM +F +D+E + +N+N++ + PQV LD IL EWL R Sbjct: 298 VITPRSNRVDVEQLMSHLFASTDLEKNYRVNLNMIGIDGRPQVKSLDMILNEWLQFRMVT 357 Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431 + RR +R+ + R+ IL+GLL A+LNIDE+I IIR ED PKPV++ RF +++ Q +AI Sbjct: 358 VRRRLQYRLDKVLERLHILEGLLAAFLNIDEVIHIIRTEDAPKPVLMERFGISDRQAEAI 417 Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491 L L+LR L KLEE +I+ E D L E+E +++ L S + +A E+++ E + Sbjct: 418 LELKLRHLAKLEEMKIRGEQDELNEEREYLETTLGSMAKMKKLVAKELKDDAEKYGDD-- 475 Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551 RR+ E A KA + ++ +P+TVV+S +GW+R+ K H VD+ L +K GD Sbjct: 476 ---RRSPLVERDDA-KALDETDLLSADPVTVVLSEKGWVRAAKGHEVDVEGLSYKAGDKY 531 Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611 K + + + + + G+ Y+LPA L S RG GE + + + A + Sbjct: 532 KASAKGKSNQPVCFIDSTGRTYSLPAHTLPSARGQGEPLSGRVSPPSGASFMAAVMGKDK 591 Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVAVVGENR 668 L+ + G F+V ++++AN + GKT L V ++ + + D +A+V Sbjct: 592 DAYLMSTDAGYGFVVRYADLLANKKAGKTVLNVPKGARVLSPQPIASTADDRIALVSNEG 651 Query: 669 KLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSA------GRSYNRS 722 +LL+F + ++PEM RGKG ++ S +++ + F + D A R Sbjct: 652 RLLVFPVSELPEMVRGKGNKMMSIPGARVAERVEFVQDVQVVGPDDALTLYAGKRHLTLK 711 Query: 723 ENDLLGWLGKRGGVGSLVPKGF 744 DL + G+RG G+ +P+GF Sbjct: 712 AGDLEHYYGERGRRGAKLPRGF 733 >gi|329298427|ref|ZP_08255763.1| DNA topoisomerase IV subunit A [Plautia stali symbiont] Length = 757 Score = 514 bits (1323), Expect = e-143, Method: Compositional matrix adjust. Identities = 264/685 (38%), Positives = 426/685 (62%), Gaps = 16/685 (2%) Query: 12 LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71 ++++ + ++L E YL Y++ I +RA+P + DG KPV RRI++AMSE+GL+ A Sbjct: 4 MIQDGAERLALHKFTENAYLNYSMYVIMDRALPYIGDGLKPVQRRIVYAMSELGLNASAK 63 Query: 72 FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYR 130 FKKSAR VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S AA R Sbjct: 64 FKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMR 123 Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190 YTE+R+++ AE++L + + VD+ ++ EP + P++ PN+L NGT+GIAVGMAT Sbjct: 124 YTESRLSKYAEVLLSELGQGTVDYIPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATD 183 Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250 IP HN++E+ EAA+ LID P ++++LLE + GPDFPT I+ R+ I + Y+ GRG Sbjct: 184 IPPHNLREVAEAAVRLIDKPNTTLDELLEIVQGPDFPTEAEIITPRDEIRKIYQNGRGSI 243 Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-- 308 R RA W E+ +V+T +P+QV +R++E+IA + K++P++ED+RDES + Sbjct: 244 RQRAVWKKED-----GEVVITALPHQVSGARVLEQIASQMRNKKLPMVEDLRDESDHENP 298 Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368 R+V+ P + +D D +M +F +D++ + +N+N++ + P V L IL EWL +R Sbjct: 299 TRLVIVPHSNRVDLDQVMNHLFATTDLQKSYRVNLNMIGLDNRPAVKNLLEILSEWLVYR 358 Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQV 428 R+ + RR + ++ + RR+ IL+GLL+A+LNIDE+I IIR+ED+PKPV++SRF ++E Q Sbjct: 359 RDTVTRRLNHSLERVLRRLHILEGLLVAFLNIDEVIHIIRSEDEPKPVLMSRFDISETQA 418 Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488 +AIL L+LR L KLEE +I+ E L E++++ ++L S ++ N + E+ + + Sbjct: 419 EAILELKLRHLAKLEEMKIRGEQAELEKERDQLQAILASDRKMSNLLKKELLADSQTYDD 478 Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548 RR+ E A KA + ++ EP+T+V+S GW+RS K H +D + L +K G Sbjct: 479 D-----RRSPLHEREEA-KALSENELVSAEPVTIVLSQMGWVRSAKGHDIDPAGLSYKAG 532 Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608 DS + A + + + + G++YTL +L S RG GE + + I + Sbjct: 533 DSYRAAARGKSNQPVAFIDSTGRSYTLDPTSLPSARGQGEPLTGKLTPPPGAVIEQVLME 592 Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV--SSEEKMKLVVKVTGDHVAVVGE 666 KLL+ S G FI +++++ R GK L + ++E L V D + + + Sbjct: 593 ADDQKLLMASDAGYGFICTFADLVSRNRAGKALLTLPENAEVMAPLAVHSGDDMLLAITQ 652 Query: 667 NRKLLIFSIDQIPEMSRGKGVRLQS 691 ++L+F + +P+MS+GKG ++ S Sbjct: 653 AGRMLMFPVADLPQMSKGKGNKIIS 677 >gi|294665434|ref|ZP_06730721.1| DNA topoisomerase IV subunit A [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292604802|gb|EFF48166.1| DNA topoisomerase IV subunit A [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 747 Score = 514 bits (1323), Expect = e-143, Method: Compositional matrix adjust. Identities = 278/735 (37%), Positives = 433/735 (58%), Gaps = 21/735 (2%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 + LR E YL Y++ + +RA+P L DG KPV RRI++AMSE+GL+ A KKSAR V Sbjct: 15 LPLREYAERAYLDYSMYVVLDRALPFLGDGLKPVQRRIVYAMSELGLNAAAKPKKSARTV 74 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQ 138 G+VIGK HPHGD + Y++LV +AQPF RYPLI GQGNFG+ D S AA RYTE+++T Sbjct: 75 GDVIGKYHPHGDSACYEALVLMAQPFSYRYPLIEGQGNFGSTDDPKSFAAMRYTESKLTP 134 Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198 +AE++L + + D+ ++ EP P++ P+LL NGT+GIAVGMAT +P HN+ E Sbjct: 135 IAEVLLGELGQGTTDWAPNFDGTLEEPTWLPARLPHLLLNGTTGIAVGMATDVPPHNLNE 194 Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258 I A L L+D+P+ S+ L E+++GPD+PT I+ + Y G G R RA + Sbjct: 195 IVSALLRLLDDPDASVADLCEHVLGPDYPTTAEIITPAADLRNIYETGHGSVRARATYKK 254 Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES--AEDVRIVLFPK 316 E IV+ +PYQV S++IE+IA+ + AK++P LEDIRDES VR+VL P+ Sbjct: 255 EHAN-----IVIDALPYQVSPSKVIEQIAQQMRAKKLPWLEDIRDESDHTSPVRVVLVPR 309 Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376 + +D + LM +F+ +D+E + +N+NV+ + PQV L +L EWL+ R + + RR Sbjct: 310 SNRVDAEQLMGHLFVTTDLERSYRVNLNVIGLDGRPQVKNLKHLLSEWLSFRSDTVTRRL 369 Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRL 436 + R+Q ++RR+ +L+GLLIA+LN+DE+I I+R+ED+PKPV++SRF+L+E Q + IL +L Sbjct: 370 NHRLQKVERRLHLLEGLLIAFLNLDEVIRIVRSEDEPKPVLISRFALSEEQAEYILETKL 429 Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496 R L +LEE +I+ E + L E+ +I ++L S + I E+ + F + RR Sbjct: 430 RQLARLEEMKIRGEQEALAKERAQIIAILESKTKLKKLIKDELTADAKKFGDA-----RR 484 Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALH 556 + + A +A + M+ EP+TVV+S +GW+R+ K H VD + + +++GD L A+ Sbjct: 485 SPLVQRGAA-QAIDETEMVASEPMTVVLSQKGWVRAAKGHEVDPAGMSYRDGDGLLTAVR 543 Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLV 616 + +T ++ L +DG+AY+ L S RG+GE + D+ + ++ Sbjct: 544 SRSTHQVAFLDSDGRAYSTAVHTLPSARGNGEPLTGRFSPASCAAFQVMASADNATRFVL 603 Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---DHVAVVGENRKLLIF 673 SS G F+ + + GK L +++ + +V+ D + V LL Sbjct: 604 ASSHGYGFVTRFENLTGRNKAGKAMLNLTTGSHVLTPAQVSNPQTDRIVAVTSAGNLLAV 663 Query: 674 SIDQIPEMSRGKG---VRLQSYKDGGISDVICFKICEGLT-WIDSAGRSYNRSENDLLGW 729 +PE+ +GKG + + K G V + G T + S R+ + S DL + Sbjct: 664 PATDVPELDKGKGNKIIEIPKAKLGTERVVAVVAVAPGNTLLVRSGARTMSLSFKDLDTY 723 Query: 730 LGKRGGVGSLVPKGF 744 +G R GSL+P+G+ Sbjct: 724 VGARASRGSLLPRGW 738 >gi|170681468|ref|YP_001745289.1| DNA topoisomerase IV subunit A [Escherichia coli SMS-3-5] gi|170519186|gb|ACB17364.1| DNA topoisomerase IV, A subunit [Escherichia coli SMS-3-5] Length = 752 Score = 514 bits (1323), Expect = e-143, Method: Compositional matrix adjust. Identities = 273/740 (36%), Positives = 445/740 (60%), Gaps = 29/740 (3%) Query: 23 RFALEE----RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78 R AL E YL Y++ I +RA+P + DG KPV RRI++AMSE+GL+ A FKKSAR Sbjct: 7 RLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSART 66 Query: 79 VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMT 137 VG+V+GK HPHGD + Y ++V +AQPF RYPL+ GQGN+G D S AA RYTE+R++ Sbjct: 67 VGDVLGKYHPHGDIACYGAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLS 126 Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197 + +EL+L + + D+ ++ EP + P++ PN+L NGT+GIAVGMAT IP HN++ Sbjct: 127 KYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLR 186 Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257 E+ +AA+ALID P+ ++++LL+ + GPD+PT I+ SR I + Y GRG R+RA W Sbjct: 187 EVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWK 246 Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFP 315 E+ +V++ +P+QV +R++E+IA + K++P+++D+RDES + R+V+ P Sbjct: 247 KED-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVP 301 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 ++ +D D +M +F +D+E + +N+N++ + P V L IL EWL RR+ + RR Sbjct: 302 RSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRR 361 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435 ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF LTE Q +AIL L+ Sbjct: 362 LNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAEAILELK 421 Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495 LR L KLEE +I+ E L E++++ +L S ++ N + E++ + + R Sbjct: 422 LRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDE-----R 476 Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555 R+ E A KA + M+ EP+T+V+S GW+RS K H +D L++K GDS K A+ Sbjct: 477 RSPLQEREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAV 535 Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615 + ++ + + G++Y + L S RG GE + + L + + KLL Sbjct: 536 KGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMESDDQKLL 595 Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--KLVVKVTGDHVAVVGENRKLLIF 673 + S G F+ ++++A R GK + + + +V++ D + + + ++L+F Sbjct: 596 MASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMF 655 Query: 674 SIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDL 726 + +P++S+GKG ++ + + G++ + LT I R +L Sbjct: 656 PVSDLPQLSKGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLT-IHVGKRKIKLRPEEL 714 Query: 727 LGWLGKRGGVGSLVPKGFPR 746 G+RG G+L+ +G R Sbjct: 715 QKVTGERGRRGTLM-RGLQR 733 >gi|218550273|ref|YP_002384064.1| DNA topoisomerase IV subunit A [Escherichia fergusonii ATCC 35469] gi|218357814|emb|CAQ90458.1| DNA topoisomerase IV, subunit A [Escherichia fergusonii ATCC 35469] gi|324114943|gb|EGC08908.1| DNA topoisomerase IV [Escherichia fergusonii B253] gi|325498577|gb|EGC96436.1| DNA topoisomerase IV subunit A [Escherichia fergusonii ECD227] Length = 752 Score = 514 bits (1323), Expect = e-143, Method: Compositional matrix adjust. Identities = 274/740 (37%), Positives = 444/740 (60%), Gaps = 29/740 (3%) Query: 23 RFALEE----RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78 R AL E YL Y++ I +RA+P + DG KPV RRI++AMSE+GL+ A FKKSAR Sbjct: 7 RLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSART 66 Query: 79 VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMT 137 VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S AA RYTE+R++ Sbjct: 67 VGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLS 126 Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197 + +EL+L + + D+ ++ EP + P++ PN+L NGT+GIAVGMAT IP HN++ Sbjct: 127 KYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLR 186 Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257 E+ +AA+ LI+ P+ ++E+LL+ + GPD+PT I+ SR I + Y GRG R+RA W Sbjct: 187 EVAKAAITLIEEPKTTLEQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWK 246 Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFP 315 E+ +V+T +P+QV +R++E+IA + K++P+++D+RDES + R+V+ P Sbjct: 247 KED-----GAVVITALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVP 301 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 ++ +D + +M +F +D+E + +N+N++ + P V L IL EWLA RR+ + RR Sbjct: 302 RSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEWLAFRRDTVRRR 361 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435 ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF LTE Q +AIL L+ Sbjct: 362 LNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAEAILELK 421 Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495 LR L KLEE +I+ E L E++++ +L S ++ + E++ + + R Sbjct: 422 LRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNTLLKKELQADADAYGDD-----R 476 Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555 R+ E A KA + M+ EP+T+V+S GW+RS K H +D L +K GDS K A+ Sbjct: 477 RSPLHEREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLSYKAGDSYKAAV 535 Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615 + ++ + + G++Y + L S RG GE + + L I + KLL Sbjct: 536 KGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPVTGKLTLPPGATIDHMLMESDDQKLL 595 Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--KLVVKVTGDHVAVVGENRKLLIF 673 + S G F+ ++++A R GK + + ++ LV++ D + + ++L+F Sbjct: 596 MASDAGYGFVCTFNDLVARNRTGKAMITLPENARVMPPLVIRSETDMLLAITHAGRMLMF 655 Query: 674 SIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDL 726 + +P++S+GKG ++ + + G++ + LT I R +L Sbjct: 656 PVSDLPQLSKGKGNKIINIPSAEAARGEDGLAHLYVMPPQSTLT-IHVGKRKIKLRPEEL 714 Query: 727 LGWLGKRGGVGSLVPKGFPR 746 G+RG G+L+ +G R Sbjct: 715 QKVTGERGRRGTLM-RGLQR 733 >gi|325924480|ref|ZP_08186000.1| DNA topoisomerase IV subunit A [Xanthomonas gardneri ATCC 19865] gi|325545042|gb|EGD16376.1| DNA topoisomerase IV subunit A [Xanthomonas gardneri ATCC 19865] Length = 747 Score = 513 bits (1322), Expect = e-143, Method: Compositional matrix adjust. Identities = 277/735 (37%), Positives = 435/735 (59%), Gaps = 21/735 (2%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 + LR E YL Y++ + +RA+P L DG KPV RRII AMSE+GL+ A KKSAR V Sbjct: 15 LPLREYAERAYLDYSMYVVLDRALPFLGDGLKPVQRRIIFAMSELGLNAAAKPKKSARTV 74 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQ 138 G+VIGK HPHGD + Y++LV +AQPF RYPLI GQGNFG+ D S AA RYTE+++T Sbjct: 75 GDVIGKYHPHGDSACYEALVLMAQPFSYRYPLIEGQGNFGSTDDPKSFAAMRYTESKLTP 134 Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198 +AE++L + + D+ ++ EP P++ P+LL NGT+GIAVGMAT +P HN+ E Sbjct: 135 IAEVLLGEISQGTTDWAANFDGTLEEPTWLPARLPHLLLNGTTGIAVGMATDVPPHNLNE 194 Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258 I A L L+DNP+ ++ +L E+++GPD+PT I+ + Y G G R RA + Sbjct: 195 IVSALLRLLDNPDATVAELCEHVLGPDYPTTAEIITPVADLRAIYETGHGSVRARATYKK 254 Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES--AEDVRIVLFPK 316 E IV+ +PYQV S++IE+IA+ + AK++P LEDIRDES VR+VL P+ Sbjct: 255 EHAN-----IVIDALPYQVSPSKVIEQIAQQMRAKKLPWLEDIRDESDHTSPVRVVLVPR 309 Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376 + +D + LM +F+ +D+E + +N+NV+ + PQV L +L EWL R + + RR Sbjct: 310 SNRVDAEQLMGHLFVTTDLERSYRVNLNVIGLDGRPQVKNLRQLLSEWLTFRSDTVTRRL 369 Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRL 436 + R+Q ++RR+ +L+GLLIA+LN+DE+I I+R+ED+PKPV++++F+L+E Q + IL +L Sbjct: 370 NHRLQKVERRLHLLEGLLIAFLNLDEVIRIVRSEDEPKPVLMAKFALSEEQAEYILETKL 429 Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496 R L +LEE +I+ E + L E+ +I ++L S + I E+ + F + RR Sbjct: 430 RQLARLEEMKIRGEQEALAKERAQILAILESKTKLKKLIKDELTADAKKFGDA-----RR 484 Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALH 556 + + A +A + M+ EP+TVV+S +GW+R+ K H VD + + +++GDSL A+ Sbjct: 485 SPLVQRGAA-QAIDETEMVASEPMTVVLSEKGWVRAAKGHEVDPAGMSYRDGDSLLAAVR 543 Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLV 616 + +T ++ L ++G+AY+ L S RG+GE + D+ + ++ Sbjct: 544 SRSTHQVAFLDSEGRAYSTAVHTLPSARGNGEPLTGRFSPASGASFQVMASADNATRFVL 603 Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT---GDHVAVVGENRKLLIF 673 SS G F+ + + GK L +++ ++ +VT D + V LL Sbjct: 604 ASSHGYGFVTRFENLTGRNKAGKAMLNLTTGAQVLTPAQVTNPQSDRIVAVTSAGNLLAV 663 Query: 674 SIDQIPEMSRGKG---VRLQSYKDGGISDVICFKICEGLT-WIDSAGRSYNRSENDLLGW 729 + +PE+ +GKG + + K G V + G T + S R+ + S DL + Sbjct: 664 AASDVPELDKGKGNKIIEIPKAKLGTERVVAVVAVAPGNTLLVRSGARTMSLSFKDLDTY 723 Query: 730 LGKRGGVGSLVPKGF 744 +G R G+L+P+G+ Sbjct: 724 VGARASRGALLPRGW 738 >gi|281180065|dbj|BAI56395.1| DNA topoisomerase IV subunit A [Escherichia coli SE15] Length = 752 Score = 513 bits (1322), Expect = e-143, Method: Compositional matrix adjust. Identities = 272/740 (36%), Positives = 445/740 (60%), Gaps = 29/740 (3%) Query: 23 RFALEE----RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78 R AL E YL Y++ I +RA+P + DG KPV RRI++AMSE+GL+ A FKKSAR Sbjct: 7 RLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSART 66 Query: 79 VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMT 137 VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S AA RYTE+R++ Sbjct: 67 VGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLS 126 Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197 + +EL+L + + D+ ++ EP + P++ PN+L NGT+GIAVGMAT IP HN++ Sbjct: 127 KYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLR 186 Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257 E+ +AA+ALID P+ ++++LL+ + GPD+PT I+ SR I + Y GRG R+RA W Sbjct: 187 EVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWK 246 Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFP 315 E+ +V++ +P+QV +R++E+IA + K++P+++D+RDES + R+V+ P Sbjct: 247 KED-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVP 301 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 ++ +D D +M +F +D+E + +N+N++ + P V L IL EWL RR+ + RR Sbjct: 302 RSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRR 361 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435 ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF LTE Q +AIL L+ Sbjct: 362 LNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAEAILELK 421 Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495 LR L KLEE +I+ E L E++++ +L S + + + E++ + + R Sbjct: 422 LRHLAKLEEMKIRGEQSELEKERDQLQGILASEHKMNSLLKKELQADAQAYGDE-----R 476 Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555 R+ E A KA + M+ EP+T+V+S GW+RS K H +D L++K GDS K A+ Sbjct: 477 RSPLQEREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAV 535 Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615 + ++ + + G++Y + L S RG GE + + L + + KLL Sbjct: 536 KGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMESDDQKLL 595 Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--KLVVKVTGDHVAVVGENRKLLIF 673 + S G F+ ++++A R GK + + + +V++ D + + + ++L+F Sbjct: 596 MASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMF 655 Query: 674 SIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDL 726 + +P++S+GKG ++ + + G++ + LT I R +L Sbjct: 656 PVSDLPQLSKGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLT-IHVGKRKIKLRPEEL 714 Query: 727 LGWLGKRGGVGSLVPKGFPR 746 G+RG G+L+ +G R Sbjct: 715 QKVTGERGRRGTLM-RGLQR 733 >gi|324005411|gb|EGB74630.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 57-2] Length = 752 Score = 513 bits (1322), Expect = e-143, Method: Compositional matrix adjust. Identities = 273/740 (36%), Positives = 445/740 (60%), Gaps = 29/740 (3%) Query: 23 RFALEE----RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78 R AL E YL Y++ I +RA+P + DG KPV RRI++AMSE+GL+ A FKKSAR Sbjct: 7 RLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSART 66 Query: 79 VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMT 137 VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S AA RYTE+R++ Sbjct: 67 VGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLS 126 Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197 + +EL+L + + D+ ++ EP + P++ PN+L NGT+GIAVGMAT IP HN++ Sbjct: 127 KYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLR 186 Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257 E+ +AA+ALID P+ ++++LL+ + GPD+PT I+ SR I + Y GRG R+RA W Sbjct: 187 EVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWK 246 Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFP 315 E+ +V++ +P+QV +R++E+IA + K++P+++D+RDES + R+V+ P Sbjct: 247 KED-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVP 301 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 ++ +D D +M +F +D+E + +N+N++ + P V L IL EWL RR+ + RR Sbjct: 302 RSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRR 361 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435 ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF LTE Q +AIL L+ Sbjct: 362 LNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAEAILELK 421 Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495 LR L KLEE +I+ E L E++++ +L S ++ N + E++ + + R Sbjct: 422 LRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDE-----R 476 Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555 R+ E A KA + M+ EP+T+V+S GW+RS K H +D L++K GDS K A+ Sbjct: 477 RSPLQEREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAV 535 Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615 + + + + G++Y + L S RG GE + + L + + KLL Sbjct: 536 KGKSNQPGVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMESDDQKLL 595 Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--KLVVKVTGDHVAVVGENRKLLIF 673 + S G F+ ++++A R GK + + + +V++ D + + + ++L+F Sbjct: 596 MASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMF 655 Query: 674 SIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDL 726 + +P++S+GKG ++ + + G++ + LT I R +L Sbjct: 656 PVSDLPQLSKGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLT-IHVGKRKIKLRPEEL 714 Query: 727 LGWLGKRGGVGSLVPKGFPR 746 G+RG G+L+ +G R Sbjct: 715 QKVAGERGRRGTLM-RGLQR 733 >gi|300905852|ref|ZP_07123585.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 84-1] gi|301301950|ref|ZP_07208084.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 124-1] gi|300402321|gb|EFJ85859.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 84-1] gi|300842931|gb|EFK70691.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 124-1] gi|315256920|gb|EFU36888.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 85-1] Length = 752 Score = 513 bits (1322), Expect = e-143, Method: Compositional matrix adjust. Identities = 272/740 (36%), Positives = 445/740 (60%), Gaps = 29/740 (3%) Query: 23 RFALEE----RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78 R AL E YL Y++ I +RA+P + DG KPV RRI++AMSE+GL+ A FKKSAR Sbjct: 7 RLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSART 66 Query: 79 VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMT 137 VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S A RYTE+R++ Sbjct: 67 VGDVLGKYHPHGDIACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAEMRYTESRLS 126 Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197 + +EL+L + + D+ ++ EP + P++ PN+L NGT+GIAVGMAT IP HN++ Sbjct: 127 KYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLR 186 Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257 E+ +AA+ALID P+ ++++LL+ + GPD+PT I+ SR I + Y GRG R+RA W Sbjct: 187 EVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWK 246 Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFP 315 E+ +V++ +P+QV +R++E+IA + K++P+++D+RDES + R+V+ P Sbjct: 247 KED-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVP 301 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 ++ +D D +M +F +D+E + +N+N++ + P V L IL EWL RR+ + RR Sbjct: 302 RSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRR 361 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435 ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF LTE Q +AIL L+ Sbjct: 362 LNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAEAILELK 421 Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495 LR L KLEE +I+ E L E++++ +L S ++ N + E++ + + R Sbjct: 422 LRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDD-----R 476 Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555 R+ E A KA + M+ EP+T+V+S GW+RS K H +D L++K GDS K A+ Sbjct: 477 RSPLQEREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAV 535 Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615 + ++ + + G++Y + L S RG GE + + L + + KLL Sbjct: 536 KGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMESDDQKLL 595 Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--KLVVKVTGDHVAVVGENRKLLIF 673 + S G F+ ++++A R GK + + + +V++ D + + + ++L+F Sbjct: 596 MASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMF 655 Query: 674 SIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDL 726 + +P++S+GKG ++ + + G++ + LT I R +L Sbjct: 656 PVSDLPQLSKGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLT-IHVGKRKIKLRPEEL 714 Query: 727 LGWLGKRGGVGSLVPKGFPR 746 G+RG G+L+ +G R Sbjct: 715 QKVTGERGRRGTLM-RGLQR 733 >gi|300958403|ref|ZP_07170543.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 175-1] gi|300314912|gb|EFJ64696.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 175-1] Length = 752 Score = 513 bits (1322), Expect = e-143, Method: Compositional matrix adjust. Identities = 273/740 (36%), Positives = 445/740 (60%), Gaps = 29/740 (3%) Query: 23 RFALEE----RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78 R AL E YL Y++ I +RA+P + DG KPV RRI++AMSE+GL+ A FKKSAR Sbjct: 7 RLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSART 66 Query: 79 VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMT 137 VG+V+GK HPHGD + Y ++V +AQPF RYPL+ GQGN+G D S AA RYTE+R++ Sbjct: 67 VGDVLGKYHPHGDIACYGAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLS 126 Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197 + +EL+L + + D+ ++ EP + P++ PN+L NGT+GIAVGMAT IP HN++ Sbjct: 127 KYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLR 186 Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257 E+ +AA+ALID P+ ++++LL+ + GPD+PT I+ SR I + Y GRG R+RA W Sbjct: 187 EVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWK 246 Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFP 315 E+ +V++ +P+QV +R++E+IA + K++P+++D+RDES + R+V+ P Sbjct: 247 KED-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVP 301 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 ++ +D D +M +F +D+E + +N+N++ + P V L IL EWL RR+ + RR Sbjct: 302 RSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRR 361 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435 ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF LTE Q +AIL L+ Sbjct: 362 LNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAEAILELK 421 Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495 LR L KLEE +I+ E L E++++ +L S ++ N + E++ + + R Sbjct: 422 LRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDD-----R 476 Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555 R+ E A KA + M+ EP+T+V+S GW+RS K H +D L++K GDS K A+ Sbjct: 477 RSPLQEREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAV 535 Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615 + ++ + + G++Y + L S RG GE + + L + + KLL Sbjct: 536 KGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLLPGATVDHMLMESDDQKLL 595 Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--KLVVKVTGDHVAVVGENRKLLIF 673 + S G F+ ++++A R GK + + + +V++ D + + + ++L+F Sbjct: 596 MASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMF 655 Query: 674 SIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDL 726 + +P++S+GKG ++ + + G++ + LT I R +L Sbjct: 656 PVSDLPQLSKGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLT-IHVGKRKIKLRPEEL 714 Query: 727 LGWLGKRGGVGSLVPKGFPR 746 G+RG G+L+ +G R Sbjct: 715 QKVTGERGRRGTLM-RGLQR 733 >gi|331664632|ref|ZP_08365538.1| DNA topoisomerase IV, A subunit [Escherichia coli TA143] gi|331058563|gb|EGI30544.1| DNA topoisomerase IV, A subunit [Escherichia coli TA143] Length = 752 Score = 513 bits (1321), Expect = e-143, Method: Compositional matrix adjust. Identities = 271/740 (36%), Positives = 445/740 (60%), Gaps = 29/740 (3%) Query: 23 RFALEE----RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78 R AL E YL Y++ I +RA+P + DG KPV RRI++AMSE+GL+ A FKKSAR Sbjct: 7 RLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKFKKSART 66 Query: 79 VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMT 137 VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S AA RYTE+R++ Sbjct: 67 VGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLS 126 Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197 + +EL+L + + D+ ++ EP + P++ PN+L NGT+GIAVGMAT IP HN++ Sbjct: 127 KYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLR 186 Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257 E+ +AA+ALI+ P ++++LL+ + GPD+PT I+ SR I + Y GRG R+RA W Sbjct: 187 EVAQAAIALIEQPNTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWK 246 Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFP 315 E+ +V++ +P+QV +R++E+IA + K++P+++D+RDES + R+V+ P Sbjct: 247 KED-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVP 301 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 ++ +D + +M +F +D+E + +N+N++ + P V L IL EWL RR+ + RR Sbjct: 302 RSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLREILSEWLVFRRDTVRRR 361 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435 ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF LTE Q +AIL L+ Sbjct: 362 LNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAEAILELK 421 Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495 LR L KLEE +I+ E L E++++ +L S ++ N + E++ + + R Sbjct: 422 LRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDE-----R 476 Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555 R+ E A KA + M+ EP+T+V+S GW+RS K H +D L++K GDS K A+ Sbjct: 477 RSPLQEREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAV 535 Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615 + ++ + + G++Y + L S RG GE + + L + + KLL Sbjct: 536 KGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMESDDQKLL 595 Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--KLVVKVTGDHVAVVGENRKLLIF 673 + S G F+ ++++A R GK + + + +V++ D + + + ++L+F Sbjct: 596 MASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMF 655 Query: 674 SIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDL 726 + +P++S+GKG ++ + + G++ + LT I R +L Sbjct: 656 PVSDLPQLSKGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLT-IHVGKRKIKLRPEEL 714 Query: 727 LGWLGKRGGVGSLVPKGFPR 746 G+RG G+L+ +G R Sbjct: 715 QKVTGERGRRGTLM-RGLQR 733 >gi|301643612|ref|ZP_07243653.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 146-1] gi|301077996|gb|EFK92802.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 146-1] Length = 752 Score = 513 bits (1321), Expect = e-143, Method: Compositional matrix adjust. Identities = 272/740 (36%), Positives = 445/740 (60%), Gaps = 29/740 (3%) Query: 23 RFALEE----RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78 R AL E YL Y++ I +RA+P + DG KPV RRI++AMSE+GL+ A FKKSAR Sbjct: 7 RLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSART 66 Query: 79 VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMT 137 VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S AA RYTE+R++ Sbjct: 67 VGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLS 126 Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197 + +EL+L + + D+ ++ EP + P++ PN+L NGT+GIAVGMAT IP HN++ Sbjct: 127 KYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLR 186 Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257 E+ +AA+ALID P+ ++++LL+ + GPD+PT I+ SR I + Y GRG R+RA W Sbjct: 187 EVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWK 246 Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFP 315 E+ +V++ +P+QV +R++E+IA + K++P+++D+RDES + R+V+ P Sbjct: 247 KED-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVP 301 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 ++ +D +M +F +D+E + +N+N++ + P V L IL EWL RR+ + RR Sbjct: 302 RSNRVDMAQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRR 361 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435 ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF LTE Q +AIL L+ Sbjct: 362 LNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAEAILELK 421 Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495 LR L KLEE +I+ E L E++++ +L S ++ N + E++ + + R Sbjct: 422 LRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDD-----R 476 Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555 R+ E A KA + M+ EP+T+V+S GW+RS K H +D L++K GDS K A+ Sbjct: 477 RSPLQEREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAV 535 Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615 + ++ + + G++Y + L S RG GE + + L + + KLL Sbjct: 536 KGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMESDDQKLL 595 Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--KLVVKVTGDHVAVVGENRKLLIF 673 + S G F+ ++++A R GK + + + +V++ D + + + ++L+F Sbjct: 596 MASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMF 655 Query: 674 SIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDL 726 + +P++S+GKG ++ + + G++ + LT I R +L Sbjct: 656 PVSDLPQLSKGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLT-IHVGKRKIKLRPEEL 714 Query: 727 LGWLGKRGGVGSLVPKGFPR 746 G+RG G+L+ +G R Sbjct: 715 QKVTGERGRRGTLM-RGLQR 733 >gi|322831366|ref|YP_004211393.1| DNA topoisomerase IV, A subunit [Rahnella sp. Y9602] gi|321166567|gb|ADW72266.1| DNA topoisomerase IV, A subunit [Rahnella sp. Y9602] Length = 757 Score = 513 bits (1321), Expect = e-143, Method: Compositional matrix adjust. Identities = 283/746 (37%), Positives = 446/746 (59%), Gaps = 22/746 (2%) Query: 12 LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71 + + + ++L E YL Y++ I +RA+P + DG KPV RRII+AMSE+GL A Sbjct: 4 MTHDGTERLALHTFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAMSELGLSNNAK 63 Query: 72 FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYR 130 FKKSAR VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S AA R Sbjct: 64 FKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMR 123 Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190 YTE+R+++ AE++L+ + + VD+ ++ EP + P++ PN+L NGT+GIAVGMAT Sbjct: 124 YTESRLSKYAEVLLRELGQGTVDYVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATD 183 Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250 IP HN++E+ AA+AL++ P S+E LLE++ GPDFPT I+ R I + Y G+G Sbjct: 184 IPPHNIREVAAAAVALLEKPNSSLEDLLEFVQGPDFPTEAEIITPRNEIRKMYESGKGSV 243 Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-- 308 R+RA W E+ GS V+T +P+QV ++++E+IA + AK++P++ED+RDES + Sbjct: 244 RMRAVWHKED---GS--AVITALPHQVSGAKVLEQIASQMRAKKLPMVEDLRDESDHENP 298 Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368 R+V+ P++ +D D +M +F +D+E + +NMN++ + PQV L IL EWLA+R Sbjct: 299 TRLVVVPRSNRIDLDQVMNHLFATTDLERSYRINMNMIGLDHRPQVKGLLEILTEWLAYR 358 Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQV 428 R+ + RR +FR+ + +R+ IL+GLL A+LNIDE+I IIR ED+PKPV++ RF L++ Q Sbjct: 359 RDTVRRRLNFRLDKVLKRLHILEGLLTAFLNIDEVIHIIRTEDEPKPVLMQRFELSDTQA 418 Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488 +AIL L+LR L KLEE +I+ E D L E++++ +LL S ++ I EI+ E F Sbjct: 419 EAILELKLRHLAKLEETKIRGEQDELAKERDQLQALLASERKLSTLIRKEIQADAEAFGD 478 Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548 RR+ E A +A + I EP+T+V+S GW+RS K H +D S L +K G Sbjct: 479 E-----RRSPITEREEA-RAMSEHDFIPSEPVTIVLSESGWVRSAKGHDIDASGLSYKAG 532 Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608 DS + A + ++ + + G++Y L L S RG GE + + I + Sbjct: 533 DSFRAAAKGKSNQPVVFMDSTGRSYALDPTTLPSARGQGEPLTGKLTPPPGATIEHVLMA 592 Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--DHVAVVGE 666 KLL+ S G F+ ++++A R GK + + K +++ G D + + Sbjct: 593 ADDQKLLMASDAGYGFVCTFNDLVARNRAGKAMITLPDNAKAFPPMELHGSDDMLLSITA 652 Query: 667 NRKLLIFSIDQIPEMSRGKG---VRLQSYKDGGISDVICFKIC---EGLTWIDSAGRSYN 720 ++L+F + +P++S+GKG V + + + D + + + + + R Sbjct: 653 AGRMLLFPVADLPQLSKGKGNKIVSIPAAQAASGEDKLAWLLVLPPQTSITLHVGKRKLV 712 Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPR 746 DL + +RG G+L+P+G R Sbjct: 713 LRPEDLQKFRAERGRKGTLLPRGLQR 738 >gi|161506259|ref|YP_001573371.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160867606|gb|ABX24229.1| hypothetical protein SARI_04454 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 752 Score = 513 bits (1321), Expect = e-143, Method: Compositional matrix adjust. Identities = 258/682 (37%), Positives = 426/682 (62%), Gaps = 16/682 (2%) Query: 13 VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72 + E + ++L E YL Y++ I +RA+P + DG KPV RRI++AMSE+GL+ A F Sbjct: 1 MSEMAERLALHEFTETAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKF 60 Query: 73 KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRY 131 KKSAR VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S AA RY Sbjct: 61 KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 120 Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191 TE+R+++ +EL+L + + D+ ++ EP + P++ PN+L NGT+GIAVGMAT I Sbjct: 121 TESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDI 180 Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251 P HN++E+ +AA+ LI+ P+ ++E+LL+ + GPD+PT I+ R I + Y GRG R Sbjct: 181 PPHNLREVAKAAITLIEQPKTTLEQLLDIVQGPDYPTEAEIITPRAEIRKIYENGRGSVR 240 Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--V 309 +RA W E+ +V+T +P+QV ++++E+IA + K++P+++D+RDES + Sbjct: 241 MRAVWTKED-----GAVVITALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPT 295 Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369 R+V+ P++ +D + +M +F +D+E + +N+N++ + P V L IL EWLA RR Sbjct: 296 RLVIVPRSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEWLAFRR 355 Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429 + + RR ++R++ + +R+ IL+GLL+A+LNIDE+I IIR ED+PKP ++SRF +TE Q + Sbjct: 356 DTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRTEDEPKPALMSRFGITETQAE 415 Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489 AIL L+LR L KLEE +I+ E D L E++++ +L S ++ + + E++ + + Sbjct: 416 AILELKLRHLAKLEEMKIRGEQDELEKERDQLQGILASERKMNSLLRKELQADSDAYGDD 475 Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549 RR+ E A KA + M+ EP+T+V+S GW+RS K H +D L++K GD Sbjct: 476 -----RRSPLHEREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGD 529 Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609 S K A+ + ++ + T G++Y + L S RG GE + + L I + Sbjct: 530 SFKAAVKGKSNQPVVFIDTTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATIEHMLMEG 589 Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--KLVVKVTGDHVAVVGEN 667 KLL+ S G F+ ++++A R GK + + + +V++ D + + + Sbjct: 590 DDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDENDMLLAITQA 649 Query: 668 RKLLIFSIDQIPEMSRGKGVRL 689 ++L+F +D +P++S+GKG ++ Sbjct: 650 GRMLMFPVDSLPQLSKGKGNKI 671 >gi|309793584|ref|ZP_07688010.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 145-7] gi|308122541|gb|EFO59803.1| DNA topoisomerase IV, A subunit [Escherichia coli MS 145-7] Length = 752 Score = 513 bits (1321), Expect = e-143, Method: Compositional matrix adjust. Identities = 272/740 (36%), Positives = 445/740 (60%), Gaps = 29/740 (3%) Query: 23 RFALEE----RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78 R AL E YL Y++ I +RA+P + DG KPV RRI++AMSE+GL+ A FKKSAR Sbjct: 7 RLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSART 66 Query: 79 VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMT 137 VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S AA RYTE+R++ Sbjct: 67 VGDVLGKYHPHGDIACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLS 126 Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197 + +EL+L + + D+ ++ EP + P++ PN+L NGT+GIAVGMAT IP HN++ Sbjct: 127 KYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLR 186 Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257 E+ +AA+ALID P+ ++++LL+ + GPD+PT I+ SR I + Y GRG R+RA W Sbjct: 187 EVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWK 246 Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFP 315 E+ +V++ +P+QV +R++E+IA + K++P+++D+RDES + R+V+ P Sbjct: 247 KED-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVP 301 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 ++ +D D +M +F +D+E + +N+N++ + P V L IL EWL RR+ + RR Sbjct: 302 RSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRR 361 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435 ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF LTE Q +AIL L+ Sbjct: 362 LNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAEAILELK 421 Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495 LR L KLEE +I+ E E++++ +L S ++ N + E++ + + R Sbjct: 422 LRHLAKLEEMKIRGEQSEREKERDQLQGILASERKMNNLLKKELQADAQAYGDD-----R 476 Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555 R+ E A KA + M+ EP+T+V+S GW+RS K H +D L++K GDS K A+ Sbjct: 477 RSPLQEREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAV 535 Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615 + ++ + + G++Y + L S RG GE + + L + + KLL Sbjct: 536 KGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMESDDQKLL 595 Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--KLVVKVTGDHVAVVGENRKLLIF 673 + S G F+ ++++A R GK + + + +V++ D + + + ++L+F Sbjct: 596 MASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMF 655 Query: 674 SIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDL 726 + +P++S+GKG ++ + + G++ + LT I R +L Sbjct: 656 PVSDLPQLSKGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLT-IHVGKRKIKLRPEEL 714 Query: 727 LGWLGKRGGVGSLVPKGFPR 746 G+RG G+L+ +G R Sbjct: 715 QKVTGERGRRGTLM-RGLQR 733 >gi|4886575|dbj|BAA77789.1| DNA topoisomerase IV [Vibrio parahaemolyticus] Length = 761 Score = 513 bits (1321), Expect = e-143, Method: Compositional matrix adjust. Identities = 283/750 (37%), Positives = 455/750 (60%), Gaps = 23/750 (3%) Query: 9 SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68 S + + V+ + +R E+ YL Y++ I +RA+P + DG KPV RRII+AMSE+GL Sbjct: 2 STEITYDGVEQLPMRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61 Query: 69 GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAA 127 A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S A Sbjct: 62 SAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFA 121 Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187 A RYTEA++++ AE++L + + V+++ ++ EP + P++ P++L NG +GIAVGM Sbjct: 122 AMRYTEAKLSKFAEVLLGELGQGTVEWQPNFDGTMKEPQMLPARLPHILLNGVTGIAVGM 181 Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247 AT IP HNV+E+ +A + LIDNP+ + ++++++ GPD+PT I+ + I + YR GR Sbjct: 182 ATDIPPHNVREVADATIHLIDNPKAELPEVMQFVKGPDYPTEAEIISPQAEIEKIYRNGR 241 Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307 G ++RA W E GS IV+T IP+QV S+L+E+IA + AK++P++ED+RDES Sbjct: 242 GSIKMRAVWHKE----GS-DIVITSIPHQVSGSKLLEQIANQMRAKKLPMVEDLRDESDH 296 Query: 308 D--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365 + RIV+ P++ ++ DLLM +F +D+E + +N+N++ + PQV L IL EW+ Sbjct: 297 ENPTRIVIVPRSNRVNCDLLMNHLFASTDLERSYRVNLNMIGLDNRPQVKGLVQILSEWI 356 Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425 RR + RR +R+ + R+ IL+GLL+AYLN+DE+I IIR ED PK V++ RF +T+ Sbjct: 357 EFRRSTVRRRLQYRLDKVMARLHILEGLLVAYLNLDEVIEIIRTEDDPKAVLMERFGITD 416 Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485 Q DAIL+ +LR L KLEE +I+ E D L E+EK++ LL S ++ + EI+ E Sbjct: 417 IQADAILDTKLRHLAKLEEMKIRGEQDELEKEREKLEQLLGSERRLNTLLKKEIKADAEK 476 Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545 + RR+ E + A KA ++ ++ EPITVV+S +GW+R K H VD +L++ Sbjct: 477 YGDD-----RRSPLVERAEA-KALTERDLVPSEPITVVLSEKGWVRHAKGHDVDAESLNY 530 Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605 K GD ++ + L +DG++Y+L + +L S R GE I +++ I Sbjct: 531 KSGDKYLAHARGKSSQPAVFLGSDGRSYSLESHSLPSARSQGEPITGRLNITAGSSIRQV 590 Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVA 662 + + LV S G F+ + +++++ R GK + + + ++ K V + D + Sbjct: 591 IMSEEDQLWLVGSDAGYGFVCKGADLLSKNRSGKALVTLPANSEVMTPKEVGDLDSDEIL 650 Query: 663 VVGENRKLLIFSIDQIPEMSRGKG---VRLQSYKDGGISDVICFKIC--EGLTWIDSAG- 716 + ++L+F I +P++++GKG + + + K +V+ I +G + AG Sbjct: 651 AITNQGRMLLFPIKDLPQLAKGKGNKIINIPAAKAKEREEVLSHLIALPQGASLTLYAGK 710 Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746 R DL + G+RG GSL+P+G R Sbjct: 711 RKLGLKPADLENFRGERGRRGSLLPRGLQR 740 >gi|219870634|ref|YP_002475009.1| DNA topoisomerase IV subunit A [Haemophilus parasuis SH0165] gi|219690838|gb|ACL32061.1| DNA topoisomerase IV subunit A [Haemophilus parasuis SH0165] Length = 735 Score = 513 bits (1321), Expect = e-143, Method: Compositional matrix adjust. Identities = 274/729 (37%), Positives = 441/729 (60%), Gaps = 26/729 (3%) Query: 23 RFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEV 82 RF E+ YL Y++ I +RA+P + DG KPV RRII+AMSE+GL+ A +KKSAR VG+V Sbjct: 5 RFT-EDAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAMSELGLNAAAKYKKSARTVGDV 63 Query: 83 IGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQVAE 141 +GK HPHGD++ Y+++V +AQPF RYPLI GQGN+G D S AA RYTE++++++AE Sbjct: 64 LGKFHPHGDRACYEAMVLMAQPFSYRYPLIDGQGNWGAPDDPKSFAAMRYTESKLSKMAE 123 Query: 142 LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICE 201 ++L + + VD++ ++ EP P++ P++L NGT+GIAVGMAT IP HN+ E+ Sbjct: 124 ILLGELGQGTVDYQPNFDGSLEEPKYLPARLPHILLNGTTGIAVGMATDIPPHNINELAA 183 Query: 202 AALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEV 261 A++ L+DNP S+ +L+ + GPD+PT I+ R I + Y GRG ++RA W EE Sbjct: 184 ASVKLLDNPTASLSDILDVVQGPDYPTEAEIITPRSEIAKIYEHGRGSIKMRAVWKREEN 243 Query: 262 GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFPKNRS 319 IV+ +P+Q S++IE+IA + K++P+++DIRDES + +RIVL P++ Sbjct: 244 N-----IVINALPHQASPSKVIEQIATQMRNKKLPMVDDIRDESDHENPIRIVLEPRSNR 298 Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379 +D D LM+ +F +D+E + +NMN++ + P V L IL EWLA RR + RR +FR Sbjct: 299 IDYDGLMDHLFATTDLEKSYRINMNMIGLDGKPAVKNLLTILTEWLAFRRTTVTRRLNFR 358 Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSL 439 + I R+ IL+GL+IA+LNIDE+I IIRNED PK +++RF L++ Q +AILNLRLR L Sbjct: 359 LDKIISRLHILEGLMIAFLNIDEVIEIIRNEDNPKAELIARFQLSDEQAEAILNLRLRHL 418 Query: 440 RKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTF 499 KLEE+++K+E L E+E + +L S ++ N I EI + F+ RR+ Sbjct: 419 AKLEEHELKAEQQKLEEEREHLQGILGSERRLNNLIKKEIEADAKAFASP-----RRSPL 473 Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHT 559 E + A KA + + EP+TV++S +GW+R K H +D+ L +K GDS + + Sbjct: 474 VERAEA-KAISESDLTPTEPVTVILSEKGWVRCAKGHDIDVQNLSYKAGDSYLAHAYGKS 532 Query: 560 TDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSS 619 ++ + + G++Y L +L S R GE I I L + + + + K+L+ S Sbjct: 533 NQPVVFIDSTGRSYALDPLSLPSARSQGEPITGKISLPDGATVQCVLMAEESRKVLMASD 592 Query: 620 KGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVAVVGENRKLLIFSID 676 G FI + ++++ + GK + ++ K+ +L+ + + + + ++L+F + Sbjct: 593 SGYGFICQFEDLVSRNKAGKAVISLTENAKVLPPQLLKEGEENLLVAMSNTGRVLVFPVS 652 Query: 677 QIPEMSRGKGVRL-----QSYKDGG--ISDVICFKICEGLTWIDSAGRSYNRSENDLLGW 729 ++PE+S+GKG ++ Q+ K+ +S ++ L ++ S R D+ + Sbjct: 653 ELPELSKGKGNKIINISAQAAKERADLLSRLLIINPTSSLVFV-SGKRKITLKPTDIEHY 711 Query: 730 LGKRGGVGS 738 G+R G+ Sbjct: 712 RGERARKGT 720 >gi|168231772|ref|ZP_02656830.1| DNA topoisomerase IV, A subunit [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168262869|ref|ZP_02684842.1| DNA topoisomerase IV, A subunit [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|194469135|ref|ZP_03075119.1| DNA topoisomerase IV, A subunit [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194455499|gb|EDX44338.1| DNA topoisomerase IV, A subunit [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|205333761|gb|EDZ20525.1| DNA topoisomerase IV, A subunit [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205348415|gb|EDZ35046.1| DNA topoisomerase IV, A subunit [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] Length = 752 Score = 513 bits (1321), Expect = e-143, Method: Compositional matrix adjust. Identities = 271/740 (36%), Positives = 447/740 (60%), Gaps = 29/740 (3%) Query: 23 RFALEE----RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78 R AL E YL Y++ I +RA+P + DG KPV RRI++AMSE+GL+ A FKKSAR Sbjct: 7 RLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSART 66 Query: 79 VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMT 137 VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S AA RYTE+R++ Sbjct: 67 VGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLS 126 Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197 + AEL+L + + D+ ++ EP + P++ PN+L NGT+GIAVGMAT IP HN++ Sbjct: 127 KYAELLLSELGQGTADWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLR 186 Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257 E+ +AA+ LI+ P+ ++++LL+ + GPD+PT I+ R I + Y GRG R+RA W Sbjct: 187 EVAKAAITLIEQPKTTLDQLLDIVQGPDYPTEAEIITPRAEIRKIYENGRGSVRMRAVWT 246 Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFP 315 E+ +V++ +P+QV ++++E+IA + K++P+++D+RDES + R+V+ P Sbjct: 247 KED-----GAVVISALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVP 301 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 ++ +D + +M +F +D+E + +N+N++ + P V L IL EWLA RR+ + RR Sbjct: 302 RSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEWLAFRRDTVRRR 361 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435 ++R++ + +R+ IL+GLL+A+LNIDE+I IIR+ED+PKP ++SRF ++E Q +AIL L+ Sbjct: 362 LNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRSEDEPKPALMSRFGISETQAEAILELK 421 Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495 LR L KLEE +I+ E D L E++++ +L S ++ + E++ + + R Sbjct: 422 LRHLAKLEEMKIRGEQDELEKERDQLQGILASERKMNTLLKKELQADADAYGDD-----R 476 Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555 R+ E A KA + M+ EP+T+V+S GW+RS K H +D L++K GDS K A+ Sbjct: 477 RSPLREREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAV 535 Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615 + ++ + T G++Y + L S RG GE + + L + + KLL Sbjct: 536 KGKSNQPVVFIDTTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVEHMLMEGDDQKLL 595 Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--KLVVKVTGDHVAVVGENRKLLIF 673 + S G F+ ++++A R GK + + + LV++ D + + + ++L+F Sbjct: 596 MASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPLVIEDEHDMLLAITQAGRMLMF 655 Query: 674 SIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDL 726 +D +P++S+GKG ++ + D G++ + LT I R +L Sbjct: 656 PVDSLPQLSKGKGNKIINIPSAEAAKGDDGLAHLYVLPPQSTLT-IHVGKRKIKLRPEEL 714 Query: 727 LGWLGKRGGVGSLVPKGFPR 746 +G+RG G+L+ +G R Sbjct: 715 QKVVGERGRRGTLM-RGLQR 733 >gi|320538928|ref|ZP_08038604.1| DNA topoisomerase IV, subunit A [Serratia symbiotica str. Tucson] gi|320031088|gb|EFW13091.1| DNA topoisomerase IV, subunit A [Serratia symbiotica str. Tucson] Length = 757 Score = 513 bits (1320), Expect = e-143, Method: Compositional matrix adjust. Identities = 278/753 (36%), Positives = 447/753 (59%), Gaps = 36/753 (4%) Query: 12 LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71 L + V+ + L E YL Y++ I +RA+P + DG KPV RRII+AMSE+GL A Sbjct: 4 LTHDGVERLPLHTFTENAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSNSAK 63 Query: 72 FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYR 130 FKKSAR VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S AA R Sbjct: 64 FKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMR 123 Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190 YTE+R+++ AE++L + + VD+ ++ EP + P++ PN+L NGT+GIAVGMAT Sbjct: 124 YTESRLSKYAEVLLAELGQGTVDWVPNFDGTLQEPKILPARLPNILLNGTTGIAVGMATD 183 Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250 IP HNV+E+ AA+ALID P ++ LL ++ GPDFPT I+ R+ I + Y+ GRG Sbjct: 184 IPPHNVREVATAAVALIDKPGALLDDLLAFVQGPDFPTEAEIITPRDEIRKIYQNGRGSV 243 Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-- 308 R+RA W E+ V+T +P+QV ++++E+IA + AK++P++ED+RDES + Sbjct: 244 RMRAVWNKEDN-----SAVITALPHQVSGAKVLEQIANQMRAKKLPMVEDLRDESDQQNP 298 Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368 R+V+ P++ +D + +M +F +D+E + +NMN++ + PQV L IL EWL +R Sbjct: 299 TRLVVVPRSNRIDLEQVMNHLFATTDLERSYRVNMNMIGLDNRPQVKGLVEILTEWLTYR 358 Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQV 428 R+ + RR ++R++ + +R+ IL+GLL+A+LNID++I IIR+ED+PKPV++ F +++ Q Sbjct: 359 RDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDQVIHIIRSEDEPKPVLMQSFGISDTQA 418 Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488 +AIL L+LR L KLEE++I+ E D L+ E++++ +LL S ++ I KEI + Sbjct: 419 EAILELKLRHLAKLEEFKIRGEQDALVKERDQLQALLASERK------LNILLKKEIQAD 472 Query: 489 STDLG-RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKE 547 + G RR+ E + A KA + + EP+T+V+S GW+RS K H ++ L +K Sbjct: 473 AQAYGDDRRSPIIERAEA-KAMNEHDFVPSEPVTIVLSEMGWVRSAKGHDIEPGGLSYKA 531 Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV 607 GDS + A + ++ + + G++Y L L S RG GE + + I + Sbjct: 532 GDSFRSAARGKSNQPVVFIDSTGRSYALDPLTLPSARGQGEPLTGKLTPPPGATIEQVLM 591 Query: 608 YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH---VAVV 664 KLL+ S G FI ++++A R GK + + + K+ +++ G+ +++ Sbjct: 592 APDDQKLLMASDAGYGFICTFNDLVARNRAGKVMITLPDDAKVLPPIEIHGEDNMLLSIT 651 Query: 665 GENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTW-----------ID 713 R +L+F + +P++S+GKG ++ S I + L W + Sbjct: 652 AAGR-ILMFPVTDLPQLSKGKGNKIVS-----IPATQAATGEDKLAWLLVLPPQTSITLH 705 Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746 R DL + +RG G+ +P+G R Sbjct: 706 VGKRKLTLRPEDLQKFRAERGRKGTQLPRGLQR 738 >gi|127511485|ref|YP_001092682.1| DNA topoisomerase IV subunit A [Shewanella loihica PV-4] gi|126636780|gb|ABO22423.1| DNA topoisomerase IV subunit A [Shewanella loihica PV-4] Length = 755 Score = 513 bits (1320), Expect = e-143, Method: Compositional matrix adjust. Identities = 277/758 (36%), Positives = 448/758 (59%), Gaps = 27/758 (3%) Query: 6 ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65 +S++ L + V+ + LR EE YL Y++ I +RA+P + DG KPV RRI++AMSE+G Sbjct: 1 MSDAIDLSLDGVEQMPLRRFTEEAYLNYSMYVIMDRALPHIGDGLKPVQRRIVYAMSELG 60 Query: 66 LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124 L + KKSAR VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D Sbjct: 61 LSAQSKHKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPK 120 Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184 S AA RYTEAR+++ +E++L + + VD+ ++ EP+V P++ P++L NG +GIA Sbjct: 121 SFAAMRYTEARLSKFSEVLLTELGQGTVDWGVNFDGTLKEPMVLPARLPHILLNGITGIA 180 Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244 VGMAT +P HN +E+ +A + LIDNP++ +E+L+E + GPD+PT I+ R I + Y Sbjct: 181 VGMATDVPPHNARELVDACVELIDNPKVDLERLMELVPGPDYPTEAEIISPRTEIAKIYE 240 Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304 GRG + RA + VE S IV+T +P+Q +++E+IA + AK++P++ D+RDE Sbjct: 241 TGRGSIKARAVYSVE-----SGEIVITALPHQASGGKILEQIAAQMQAKKLPMVADLRDE 295 Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362 S + VRIV+ P++ +D D LM +F +D+E F +N+NVL + PQV L +L Sbjct: 296 SDHESPVRIVIVPRSNRVDCDQLMAHLFATTDLEKNFRVNLNVLGLNGRPQVKGLKQLLT 355 Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422 EWL R + RR R+ + R+ IL+ L+IA+LNIDE+I IIR D PK ++SRF+ Sbjct: 356 EWLEFRLTTVRRRLEHRLDKVLARLHILEALMIAFLNIDEVIEIIRYHDDPKAELMSRFN 415 Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482 LT+ Q +AIL+L+LR L KLEE++IK+E L AE+EK++ LL+S ++ I E+++ Sbjct: 416 LTDEQANAILDLKLRHLAKLEEFKIKTEQSELEAEREKLELLLSSDRRMKTLIKKELKQD 475 Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542 E + RR+ E S + +A +Q ++ E +TVV+S +GW+R K H +D +A Sbjct: 476 AETYGDE-----RRSPLVERSES-RALSEQELVPAEAVTVVLSEKGWVRCAKGHDIDPTA 529 Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602 L +K GD A + + + + G+A+ L S R GE + L+ + + Sbjct: 530 LSYKAGDGFLCAASGRSNHATVFIGSTGRAFATDTHTLPSARSQGEPVTTRFQLSPGESM 589 Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGD 659 A + + L+ S G FI + ++++ + GK L + + ++ K V K + Sbjct: 590 AHALLGEDGQCFLLASDAGYGFIGDYKDMVSRNKAGKALLSLPANAQVLPPKRVDKSRSE 649 Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGV--------RLQSYKDGGISDVICFKICEGLTW 711 + + ++L+FS+D +P++++GKG R +S ++ + + + W Sbjct: 650 SILAITNEGRMLLFSVDALPQLAKGKGNKIIGIASDRAKSREELLVHLHVVPQDTAVTLW 709 Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGK 749 + R +DL + G+RG G+ +P+G R K Sbjct: 710 --AGKRKLTLKPSDLEHYRGERGRRGAKLPRGLQRVDK 745 >gi|93006981|ref|YP_581418.1| DNA topoisomerase IV subunit A [Psychrobacter cryohalolentis K5] gi|92394659|gb|ABE75934.1| DNA topoisomerase IV subunit A [Psychrobacter cryohalolentis K5] Length = 771 Score = 513 bits (1320), Expect = e-143, Method: Compositional matrix adjust. Identities = 277/760 (36%), Positives = 446/760 (58%), Gaps = 37/760 (4%) Query: 12 LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71 L E + S+ E+ YL YA+ I +RA+P++ DG KPV RRI++AMSE+GL A Sbjct: 13 LANEPMDTRSVAEFAEQAYLNYAMYVIMDRALPNIADGLKPVQRRIVYAMSELGLKSTAK 72 Query: 72 FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYR 130 KKSAR VG+V+GK HPHGD + Y+++V +AQPF RYPLI+GQGN+G+ D S AA R Sbjct: 73 AKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLITGQGNWGSPDDPKSFAAMR 132 Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190 YTEA+M+ A +L + + VD++D ++ EP P++ PN+L NGT+GIAVGMAT Sbjct: 133 YTEAKMSAYANTLLAELGQGTVDWQDNFDGTMLEPTTLPARLPNILLNGTTGIAVGMATD 192 Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250 IP HN+ E+ AA+ L+ NPE+S+++L + I PD PT I+ S++ + Y GRG + Sbjct: 193 IPPHNLNEVVRAAIRLLKNPELSVKQLTQSIPAPDLPTPAEIITSKKDLQAIYETGRGSY 252 Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-- 308 ++RA + ++ + +++ +PYQV +++ E+IA+L+ K++P + DI DES + Sbjct: 253 KMRATFHIDPKEKN--LVIINALPYQVSGNKIQEQIAKLMTDKKLPWIVDIHDESDHENA 310 Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368 RIVL K+ +D +M +F +D+E+ + +NMN++ + PQV L IL+EWL R Sbjct: 311 CRIVLELKSTRVDVQRVMSHLFASTDLESNYRVNMNMIGLNGKPQVKNLKEILEEWLVCR 370 Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQV 428 R V+ RR +R+ ID+R+ IL GLLIAYLNIDE+I IIR ED PK ++ + LTE Q Sbjct: 371 RSVVTRRLQYRLDKIDKRLHILAGLLIAYLNIDEVIRIIREEDDPKLSLMQDYDLTEIQA 430 Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488 +AIL++RLR L KLEE +++ E D L AE+ I L++ N + + E+ + Sbjct: 431 NAILDIRLRQLAKLEEIELRREQDELAAERAIIQEYLDNPDSLTNLM------IDELTAD 484 Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548 + G R + +A + ++ EP+T ++S GWIR+ K H VD + + ++ G Sbjct: 485 MKEHGNERVSQLAEREEAQALKESDLVPSEPVTAILSKAGWIRAAKGHDVDAAGMAYRSG 544 Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608 DS + + A ++I +L + G++Y++ A +L S RG G+ + ++ Sbjct: 545 DSYQAHVRAKANEKIYVLDSTGRSYSIDAHSLASARGQGDPLTSVLKPPAGATFEQLLTG 604 Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV------------ 656 D+ ++++ SS+G FI + +N + GK + ++++ ++ + ++ Sbjct: 605 DNDQRIILASSQGYGFINTIGNLDSNQKAGKNIINLAADSRLLPIARIDAQTEVIVSSEN 664 Query: 657 ----------TGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFK-I 705 T DH+AVV LLIF++D +PE +RGKG ++ + K G +V+ + Sbjct: 665 NGIPASENSSTLDHIAVVTNAGYLLIFALDDLPEQARGKGNKMINLK--GDEEVLTITPL 722 Query: 706 CEGLTWIDSAG-RSYNRSENDLLGWLGKRGGVGSLVPKGF 744 + + + +AG R DL + KRG G +P+GF Sbjct: 723 SKHDSLVITAGKRHVTLKPMDLANYTSKRGSRGGQLPRGF 762 >gi|21242194|ref|NP_641776.1| DNA topoisomerase IV subunit A [Xanthomonas axonopodis pv. citri str. 306] gi|21107613|gb|AAM36312.1| topoisomerase IV subunit A [Xanthomonas axonopodis pv. citri str. 306] Length = 747 Score = 513 bits (1320), Expect = e-143, Method: Compositional matrix adjust. Identities = 277/735 (37%), Positives = 432/735 (58%), Gaps = 21/735 (2%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 + LR E YL Y++ + +RA+P L DG KPV RRI++AMSE+GL+ A KKSAR V Sbjct: 15 LPLREYAERAYLDYSMYVVLDRALPFLGDGLKPVQRRIVYAMSELGLNAAAKPKKSARTV 74 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQ 138 G+VIGK HPHGD + Y++LV +AQPF RYPLI GQGNFG+ D S AA RYTE+++T Sbjct: 75 GDVIGKYHPHGDSACYEALVLMAQPFSYRYPLIEGQGNFGSTDDPKSFAAMRYTESKLTP 134 Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198 +AE++L + + D+ ++ EP P++ P+LL NGT+GIAVGMAT +P HN+ E Sbjct: 135 IAEVLLGELGQGTTDWAPNFDGTLEEPTWLPARLPHLLLNGTTGIAVGMATDVPPHNLNE 194 Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258 I A L L+D+P+ S+ L E+++GPD+PT I+ + Y G G R RA + Sbjct: 195 IVSALLRLLDDPDASVADLCEHVLGPDYPTTAEIITPAADLRNIYETGHGSVRARATYKK 254 Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES--AEDVRIVLFPK 316 E I + +PYQV S++IE+IA+ + AK++P LEDIRDES VR+VL P+ Sbjct: 255 EHAN-----IFIDALPYQVSPSKVIEQIAQQMRAKKLPWLEDIRDESDHTSPVRVVLVPR 309 Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376 + +D + LM +F+ +D+E + +N+NV+ + PQV L +L EWL+ R + + RR Sbjct: 310 SNRVDAEQLMGHLFVTTDLERSYRVNLNVIGLDGRPQVKNLKHLLSEWLSFRSDTVTRRL 369 Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRL 436 + R+Q ++RR+ +L+GLLIA+LN+DE+I I+R+ED+PKPV++SRF+L+E Q + IL +L Sbjct: 370 NHRLQKVERRLHLLEGLLIAFLNLDEVIRIVRSEDEPKPVLISRFALSEEQAEYILETKL 429 Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496 R L +LEE +I+ E + L E+ +I ++L S + I E+ + F + RR Sbjct: 430 RQLARLEEMKIRGEQEALAEERAQIMAILESKTKLKKLIKDELTADAKKFGDA-----RR 484 Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALH 556 + + A +A + M+ EP+TVV+S +GW+R+ K H VD + + +++GD L A+ Sbjct: 485 SPLVQRGAA-QAIDETEMVASEPMTVVLSQKGWVRAAKGHEVDPAGMSYRDGDGLLAAVR 543 Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLV 616 + +T ++ L +DG+AY+ L S RG+GE + D+ + ++ Sbjct: 544 SRSTHQVAFLDSDGRAYSTAVHTLPSARGNGEPLTGRFSPASGAAFQVMASADNATRFVL 603 Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---DHVAVVGENRKLLIF 673 SS G F+ + + GK L +++ + +V+ D + V LL Sbjct: 604 ASSHGYGFVTRFENLTGRNKAGKAMLNLTTGSHVLTPAQVSNPQTDRIVAVTSAGNLLAV 663 Query: 674 SIDQIPEMSRGKG---VRLQSYKDGGISDVICFKICEGLT-WIDSAGRSYNRSENDLLGW 729 +PE+ +GKG + + K G V + G T + S R+ + S DL + Sbjct: 664 PATDVPELDKGKGNKIIEIPKAKLGTERVVAVVAVAPGNTLLVRSGARTMSLSFKDLDTY 723 Query: 730 LGKRGGVGSLVPKGF 744 +G R GSL+P+G+ Sbjct: 724 VGARASRGSLLPRGW 738 >gi|146313063|ref|YP_001178137.1| DNA topoisomerase IV subunit A [Enterobacter sp. 638] gi|145319939|gb|ABP62086.1| DNA topoisomerase IV subunit A [Enterobacter sp. 638] Length = 752 Score = 513 bits (1320), Expect = e-143, Method: Compositional matrix adjust. Identities = 273/740 (36%), Positives = 447/740 (60%), Gaps = 29/740 (3%) Query: 23 RFALEE----RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78 R AL E YL Y++ I +RA+P + DG KPV RRI+ AMSE+GL A FKKSAR Sbjct: 7 RLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVFAMSELGLSASAKFKKSART 66 Query: 79 VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMT 137 VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S AA RYTE+R++ Sbjct: 67 VGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLS 126 Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197 + AE++L + + VD+ ++ EP + P++ PN+L NGT+GIAVGMAT IP HN++ Sbjct: 127 KYAEVLLGELGQGTVDWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLR 186 Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257 E+ +AA+ LI+ P +++++L+ + GPD+PT I+ SR I + Y+ GRG R+RA W Sbjct: 187 EVAKAAMTLIEKPNTTLDEVLDIVQGPDYPTEAEIITSRAEIRKIYQNGRGSVRMRAVWT 246 Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFP 315 E+ +V+T +P+QV ++++E+IA + K++P+++D+RDES + R+V+ P Sbjct: 247 KED-----GAVVITALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVP 301 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 ++ +D + +M +F+ +D+E + +N+N++ + P V L IL EWLA RR+ + RR Sbjct: 302 RSNRVDMEQVMNHLFVTTDLEKSYRINLNMIGLNGRPSVKNLLEILTEWLAFRRDTVRRR 361 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435 ++R++ + +R+ IL+GLL+A+LNIDE+I IIR+ED+PKP ++SRF ++E Q +AIL L+ Sbjct: 362 LNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRSEDEPKPALMSRFGISETQAEAILELK 421 Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495 LR L KLEE +I+ E + L E++++ ++L S ++ N + E++ + F R Sbjct: 422 LRHLAKLEEMKIRGEQNELEKERDQLQAILASERKMSNLLKKELQADSDAFGDD-----R 476 Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555 R+ E A KA + M+ EP+T+V+S GW+RS K H +D L +K GDS K A+ Sbjct: 477 RSPLHEREEA-KAMNEHDMLPSEPVTIVLSQSGWVRSAKGHDIDAPGLSYKAGDSFKSAV 535 Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615 + ++ + + G++Y + L S RG GE I + L + + KLL Sbjct: 536 KGKSNQPVVFIDSTGRSYAIDPITLPSARGQGEPITGKLTLPPGATVDHMLMEGEEQKLL 595 Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--KLVVKVTGDHVAVVGENRKLLIF 673 + S G FI ++++A R GK + + + LV++ D + + ++L+F Sbjct: 596 MASDAGYGFICTFNDLVARNRAGKALISLPDNAHVMPPLVIENDNDMLLAITAAGRMLMF 655 Query: 674 SIDQIPEMSRGKGVRLQSYK-------DGGISDVICFKICEGLTWIDSAGRSYNRSENDL 726 + +P++S+GKG ++ S + G++ + LT + R +L Sbjct: 656 PVSDLPQLSKGKGNKIISIPSAEAAKGEDGLAHLFILPPQSTLT-VHVGKRKIKLRPEEL 714 Query: 727 LGWLGKRGGVGSLVPKGFPR 746 +G+RG GSL+ +G R Sbjct: 715 QKVVGERGRRGSLM-RGLQR 733 >gi|326624928|gb|EGE31273.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 760 Score = 512 bits (1319), Expect = e-143, Method: Compositional matrix adjust. Identities = 271/747 (36%), Positives = 449/747 (60%), Gaps = 25/747 (3%) Query: 12 LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71 L+ + + ++L E YL Y++ I +RA+P + DG KPV RRI++AMSE+GL+ A Sbjct: 8 LMSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAK 67 Query: 72 FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYR 130 FKKSAR VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S AA R Sbjct: 68 FKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMR 127 Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190 YTE+R+++ AEL+L + + D+ ++ EP + P++ PN+L NGT+GIAVGMAT Sbjct: 128 YTESRLSKYAELLLSELGQGTADWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATD 187 Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250 IP HN++E+ +AA+ LI+ P+ ++++LL+ + GPD+PT I+ I + Y GRG Sbjct: 188 IPPHNLREVAKAAITLIEQPKTTLDQLLDIVQGPDYPTEAEIITPSAEIRKIYENGRGSV 247 Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-- 308 R+RA W E+ +V+T +P+QV ++++E+IA + K++P+++D+RDES + Sbjct: 248 RMRAVWTKED-----GAVVITALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENP 302 Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368 R+V+ P++ +D + +M +F +D+E + +N+N++ + P V L IL EWLA R Sbjct: 303 TRLVIVPRSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEWLAFR 362 Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQV 428 R+ + RR ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF ++E Q Sbjct: 363 RDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGISETQA 422 Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488 +AIL L+LR L KLEE +I+ E D L E++++ +L S ++ + E++ + + Sbjct: 423 EAILELKLRHLAKLEEMKIRGEQDELEKERDQLQGILASERKMNTLLKKELQADSDAYGD 482 Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548 RR+ E A KA + M+ EP+T+V+S GW+RS K H +D L++K G Sbjct: 483 D-----RRSPLREREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAG 536 Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608 DS K A+ + ++ + T G++Y + L S RG GE + + L + + Sbjct: 537 DSFKAAVKGKSNQPVVFIDTTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVEHMLME 596 Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--KLVVKVTGDHVAVVGE 666 KLL+ S G F+ ++++A R GK + + + LV++ D + + Sbjct: 597 GDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPLVIEDEHDMLLAITL 656 Query: 667 NRKLLIFSIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTWIDSAGRSY 719 ++L+F +D +P++S+GKG ++ + D G++ + LT I R Sbjct: 657 AGRMLMFPVDSLPQLSKGKGNKIINIPSAEAAKGDDGLAHLYVLPPQSTLT-IHVGKRKI 715 Query: 720 NRSENDLLGWLGKRGGVGSLVPKGFPR 746 +L +G+RG G+L+ +G R Sbjct: 716 KLRPEELQKVVGERGRRGTLM-RGLQR 741 >gi|161616162|ref|YP_001590127.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|161365526|gb|ABX69294.1| hypothetical protein SPAB_03964 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] Length = 752 Score = 512 bits (1319), Expect = e-143, Method: Compositional matrix adjust. Identities = 271/740 (36%), Positives = 447/740 (60%), Gaps = 29/740 (3%) Query: 23 RFALEE----RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78 R AL E YL Y++ I +RA+P + DG KPV RRI++AMSE+GL+ A FKKSAR Sbjct: 7 RLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKFKKSART 66 Query: 79 VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMT 137 VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S AA RYTE+R++ Sbjct: 67 VGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLS 126 Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197 + AEL+L + + D+ ++ EP + P++ PN+L NGT+GIAVGMAT IP HN++ Sbjct: 127 KYAELLLSELGQGTADWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLR 186 Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257 E+ +AA+ LI+ P+ ++++LL+ + GPD+PT I+ R I + Y GRG R+RA W Sbjct: 187 EVAKAAITLIEQPKTTLDQLLDIVQGPDYPTEAEIITPRAEIRKIYENGRGSVRMRAVWT 246 Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFP 315 E+ +V++ +P+QV ++++E+IA + K++P+++D+RDES + R+V+ P Sbjct: 247 KED-----GAVVISALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVP 301 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 ++ +D + +M +F +D+E + +N+N++ + P V L IL EWLA RR+ + RR Sbjct: 302 RSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEWLAFRRDTVRRR 361 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435 ++R++ + +R+ IL+GLL+A+LNIDE+I IIR+ED+PKP ++SRF ++E Q +AIL L+ Sbjct: 362 LNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRSEDEPKPALMSRFGISETQAEAILELK 421 Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495 LR L KLEE +I+ E D L E++++ +L S ++ + E++ + + R Sbjct: 422 LRHLAKLEEMKIRGEQDELEKERDQLQGILASERKMNTLLKKELQADADAYGDD-----R 476 Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555 R+ E A KA + M+ EP+T+V+S GW+RS K H +D L++K GDS K A+ Sbjct: 477 RSPLREREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAV 535 Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615 + ++ + T G++Y + L S RG GE + + L + + KLL Sbjct: 536 KGKSNQPVVFIDTTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVEHMLMEGDDQKLL 595 Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--KLVVKVTGDHVAVVGENRKLLIF 673 + S G F+ ++++A R GK + + + LV++ D + + + ++L+F Sbjct: 596 MASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPLVIEDEHDMLLAITQAGRMLMF 655 Query: 674 SIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDL 726 +D +P++S+GKG ++ + D G++ + LT I R +L Sbjct: 656 PVDSLPQLSKGKGNKIINIPSAEAAKGDDGLAHLYVLPPQSTLT-IHVGKRKIKLRPEEL 714 Query: 727 LGWLGKRGGVGSLVPKGFPR 746 +G+RG G+L+ +G R Sbjct: 715 QKVVGERGRRGTLM-RGLQR 733 >gi|326567166|gb|EGE17288.1| DNA topoisomerase IV subunit A [Moraxella catarrhalis BC1] Length = 745 Score = 512 bits (1319), Expect = e-143, Method: Compositional matrix adjust. Identities = 277/727 (38%), Positives = 445/727 (61%), Gaps = 19/727 (2%) Query: 27 EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86 E YL YA+ I +RA+P + DG KPV RRI++AMSE+GL A KKSAR VG+V+GK Sbjct: 15 EYAYLNYAMYVIMDRALPHIADGLKPVQRRIVYAMSELGLKHTAKPKKSARTVGDVLGKY 74 Query: 87 HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQVAELILQ 145 HPHGD + Y+++V +AQPF RYPLI+GQGN+G+ D S AA RYTEA M++ A+++L Sbjct: 75 HPHGDSACYEAMVLMAQPFSYRYPLITGQGNWGSPDDPKSFAAMRYTEANMSRYADILLG 134 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 +++ VD++D ++ SEPV P++ PN+L NGT+GIAVGMAT IP HN+ E+ +A + Sbjct: 135 EIEQGTVDWQDNFDGSLSEPVTLPARLPNILLNGTTGIAVGMATDIPPHNLHEVVKACIR 194 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265 L+ NPE+S ++L++ + PD PT I+ + ++ Y G+G +++RA + + + + Sbjct: 195 LLKNPELSTKQLVQTLPAPDLPTTAEIITPKNDMIAMYETGKGSYKMRATYHTDP--KQN 252 Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES--AEDVRIVLFPKNRSLDPD 323 +++ +PYQV ++++E+IA+L++ K++P + +IRDES RIV+ K L+ D Sbjct: 253 HLVIINALPYQVSGNKVVEQIAKLMMDKKLPWVTEIRDESDNLNPCRIVIELKKSKLNID 312 Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383 +M +F +D+ET + +NMN++ + P+V L IL EWL+ R+ V+ RR +R+ I Sbjct: 313 KIMSHLFANTDLETSYRVNMNMIGINGKPEVKNLKSILLEWLSVRKSVVIRRLQYRLDKI 372 Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLE 443 + R+ IL GLLIAYLNIDEII IIR + PK +++RF LT+ Q +AIL+++LR L KLE Sbjct: 373 NERLHILAGLLIAYLNIDEIIDIIRTAEDPKIELMTRFGLTQTQANAILDIKLRQLAKLE 432 Query: 444 EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVS 503 E ++ +E D L AE+ I LN+ + + E+ I T RR+ V Sbjct: 433 EIELTAEHDRLEAERLLISEQLNNPEMLTKLLIDEL-----IADAKTHGDARRSPV--VQ 485 Query: 504 RADKATLQQA-MIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDR 562 RA+ ++L+ +I EPIT ++S GWIR+ K H D + ++++ GD+ +T+R Sbjct: 486 RAESSSLKAVDLIASEPITAILSQAGWIRAAKGHHADPAEMNYRTGDAYLTHALGKSTER 545 Query: 563 ILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST---CKLLVVSS 619 ++L+ G++Y L + +L S R G+ I L++L I Y+ T +L+ SS Sbjct: 546 LILVDNTGRSYGLDSIHLPSARTQGDPITSLLNLPAGAKIDQLLFYNQTNGSPNVLMASS 605 Query: 620 KGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQI 678 G FI + + + + GK+ + ++ + +VV D VAV N LLIF+ D++ Sbjct: 606 LGYGFINQLANLDTAQKSGKSSINLADGVLLPIVVMQDDDSLVAVSLSNGNLLIFASDEL 665 Query: 679 PEMSRGKGVRLQSYKDG-GISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVG 737 P++++GKG +L + K G I+ + + L I + R+ + ND+ ++ R G Sbjct: 666 PKLAKGKGNKLANLKAGETITAITALSDTDALV-ITAGKRTLTLNPNDIANYIAHRANRG 724 Query: 738 SLVPKGF 744 + +PKGF Sbjct: 725 NPLPKGF 731 >gi|300114693|ref|YP_003761268.1| DNA topoisomerase IV subunit A [Nitrosococcus watsonii C-113] gi|299540630|gb|ADJ28947.1| DNA topoisomerase IV, A subunit [Nitrosococcus watsonii C-113] Length = 747 Score = 512 bits (1319), Expect = e-143, Method: Compositional matrix adjust. Identities = 284/730 (38%), Positives = 435/730 (59%), Gaps = 23/730 (3%) Query: 27 EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86 E+ YL Y++ I +RA+P L DG KPV RRII+AMSE+GL A +KKSAR VG+V+GK Sbjct: 19 EKAYLDYSMYVILDRALPHLGDGLKPVQRRIIYAMSELGLSASAKYKKSARTVGDVLGKY 78 Query: 87 HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQVAELILQ 145 HPHGD + Y+++V +AQ F RYPLI+GQGN+G+ D S AA RYTEAR+ AEL+L Sbjct: 79 HPHGDSACYEAMVLMAQQFSYRYPLIAGQGNWGSPDDPKSFAAMRYTEARLAPFAELLLA 138 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 V + V++ ++ EP + P++ P++L NGT GIAVGMAT IP HN+ E+ A L Sbjct: 139 EVGQGTVNWTPNFDGTLQEPRLLPARVPHVLLNGTMGIAVGMATDIPPHNLHEVAAACLH 198 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265 L+ P ++ +L EY+ GPD+PT I+ ++V+ Y G+G R+RAR+ VE+ Sbjct: 199 LLQCPNATVAELCEYLPGPDYPTEAEIITPSAALVKMYETGQGSVRLRARYRVEQ----- 253 Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFPKNRSLDPD 323 IVV +P+QV +R++E+IA+ + AK++P+L D+RDES + R+VL P R ++ + Sbjct: 254 GNIVVNALPHQVSGARVLEQIAQQMQAKKLPMLADLRDESDHENPTRLVLVPHARRIEVE 313 Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383 +M +F +D+E + +N NV+ + PQV L +L EW R L RR +R++ + Sbjct: 314 TVMSHLFATTDLERSYRVNFNVIGLDGRPQVKNLRDLLGEWFHFRIGTLRRRFQYRLEKV 373 Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLE 443 + R+++L GLLIAYLNIDE++AIIRNE+ PKPV+++RF L++ Q +AIL L+LR L +LE Sbjct: 374 EDRLQVLAGLLIAYLNIDEVVAIIRNEEVPKPVLIARFKLSDRQAEAILELKLRYLARLE 433 Query: 444 EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVS 503 E +I++E L AE+++++ +L S + + + E+ E F + RR+ E Sbjct: 434 ETKIQAENKALAAERKRLEKMLGSESRIKDLLRQELLADTEKFGDA-----RRSPIVERP 488 Query: 504 RADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRI 563 A A QQ+++ E ITVV+S +GW+R+ KS V+ +AL ++ GDS + + + Sbjct: 489 SA-TALDQQSLLPAELITVVLSEKGWVRAAKSQDVNPAALSYRTGDSYRASARGRSNQPA 547 Query: 564 LLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNA 623 + L + G++YTLPA L S RG GE + + + + V + + L+ S+ G Sbjct: 548 VFLDSTGRSYTLPAHGLPSARGQGEPLSGHLQVAPGAEFVAILLAEPEEFYLMASNMGYG 607 Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---DHVAVVGENRKLLIFSIDQIPE 680 F+ + + R GK L VS+ K V V D VAV +LL+F + +P Sbjct: 608 FLCQARHLYTKNRAGKAVLNVSAGAKALPPVPVVDRELDQVAVATNVGRLLLFPLRDLPF 667 Query: 681 MSRGKGVRL-----QSYKDGGISDVICFKICEGLTWIDSAGRSY-NRSENDLLGWLGKRG 734 ++RGKGV+L + G + I +G AGR + DL + G+R Sbjct: 668 IARGKGVKLINISSTRFAQGQEAVRALAVISQGGALQVFAGRRHLTLKSEDLEPYQGERA 727 Query: 735 GVGSLVPKGF 744 G +P+GF Sbjct: 728 RRGLTLPRGF 737 >gi|156932600|ref|YP_001436516.1| DNA topoisomerase IV subunit A [Cronobacter sakazakii ATCC BAA-894] gi|156530854|gb|ABU75680.1| hypothetical protein ESA_00382 [Cronobacter sakazakii ATCC BAA-894] Length = 756 Score = 512 bits (1319), Expect = e-143, Method: Compositional matrix adjust. Identities = 262/685 (38%), Positives = 431/685 (62%), Gaps = 16/685 (2%) Query: 12 LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71 L + + ++L E YL Y++ I +RA+P + DG KPV RRI++AMSE+GL+ A Sbjct: 4 LTHDGAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAK 63 Query: 72 FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYR 130 FKKSAR VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S AA R Sbjct: 64 FKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMR 123 Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190 YTE+R+++ AE++L + + VD+ ++ +EP + P++ PN+L NGT+GIAVGMAT Sbjct: 124 YTESRLSKYAEVLLGELGQGTVDYVPNFDGTLNEPKMLPARLPNILLNGTTGIAVGMATD 183 Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250 IP HN++E+ +AA++LID+P+ ++++LL+ + GPD+PT I+ SR I + Y+ GRG Sbjct: 184 IPPHNLREVAKAAVSLIDSPKTTLDELLDIVQGPDYPTEAEIITSRAEIRKIYQSGRGSV 243 Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-- 308 R+RA W E+ +V++ +P+QV +R++E+IA + AK++P+++D+RDES + Sbjct: 244 RMRAVWKKED-----GAVVISALPHQVSGARVLEQIASQMRAKKLPMVDDLRDESDHENP 298 Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368 R+V+ P++ +D D +M +F +D+E + +N+N++ + P V L IL EWLA R Sbjct: 299 TRLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEWLAFR 358 Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQV 428 R+ + RR ++R++ + +R+ IL+GLL+A+LNIDE+I IIR+ED+PKPV++SRF ++E Q Sbjct: 359 RDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRSEDEPKPVLMSRFGISETQA 418 Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488 +AIL L+LR L KLEE +I+ E +L E+++I +L S ++ + EI+ + + Sbjct: 419 EAILELKLRHLAKLEEMKIRGEQSDLEKERDQIQGILASERKMNTLLKKEIQADADAYGD 478 Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548 RR+ E A KA + M+ EP+T+V+S GW+RS K H +D AL +K G Sbjct: 479 D-----RRSPLHEREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAKALSYKAG 532 Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608 D ++ + ++ + + G++Y L +L S RG GE I + L + + Sbjct: 533 DGWLSSVKGKSNQPVVFIDSTGRSYALDPVSLPSARGQGEPITGKLTLPPGAVVEHMLMT 592 Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--KLVVKVTGDHVAVVGE 666 KLL+ S G F+ +++IA R GK + + + L ++ D + + Sbjct: 593 GEEQKLLMASDAGYGFVCTFNDLIARNRAGKALITLPENAHVLKPLEIEHDDDMLLAITA 652 Query: 667 NRKLLIFSIDQIPEMSRGKGVRLQS 691 ++L+F + +P++S+GKG ++ S Sbjct: 653 AGRMLMFPVADLPQLSKGKGNKIIS 677 >gi|315179147|gb|ADT86061.1| topoisomerase IV, subunit A [Vibrio furnissii NCTC 11218] Length = 757 Score = 512 bits (1319), Expect = e-143, Method: Compositional matrix adjust. Identities = 280/750 (37%), Positives = 450/750 (60%), Gaps = 23/750 (3%) Query: 9 SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68 S + + V+ + LR E+ YL Y++ I +RA+P + DG KPV RRII+AMSE+GL Sbjct: 2 STEITYDGVEQLPLRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61 Query: 69 GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAA 127 A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S A Sbjct: 62 SAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFA 121 Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187 A RYTEA++++ AE++L + + VD++ ++ EP + P++ P++L NG +GIAVGM Sbjct: 122 AMRYTEAKLSKFAEVLLSELGQGTVDWQPNFDGTMKEPKMLPARLPHILLNGVTGIAVGM 181 Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247 AT IP HNV+E+ +A + LIDNP+ + L++Y+ GPD+PT I+ + + + YR GR Sbjct: 182 ATDIPPHNVREVADATIHLIDNPQAGLSDLMQYVKGPDYPTEAEIISPQVELEKVYRTGR 241 Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307 G ++RA W E +V+T +P+QV ++L+E+IA + AK++P++ED+RDES Sbjct: 242 GSVKMRAVWHKEGAD-----VVITALPHQVSGAKLLEQIANQMRAKKLPMVEDLRDESDH 296 Query: 308 D--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365 + RIV+ P++ +D DLLM +F +D+E + +N+N++ + PQV L IL EW+ Sbjct: 297 ENPTRIVIVPRSNRVDCDLLMNHLFASTDLERSYRVNLNMIGLDNRPQVKGLVSILSEWI 356 Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425 RRE + R +R+ + R+ IL+GLLIAYLNIDE+I IIR ED PK V+++RF +++ Sbjct: 357 QFRRETVRSRLQYRLDKVLARLHILEGLLIAYLNIDEVIEIIRTEDDPKAVLMARFGISD 416 Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485 Q DAIL+ +LR L KLEE +I+ E D L E++K++ LL S ++ + E++ E Sbjct: 417 IQADAILDTKLRHLAKLEEMKIRGEQDELEKERKKLEELLGSERRLNTLLKKELKADAEK 476 Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545 + RR+ E A KA ++ ++ E ITVV+S +GWIR K H VD +L++ Sbjct: 477 YGDD-----RRSPLVEREEA-KALTERDLMPSEAITVVLSEKGWIRHAKGHEVDCESLNY 530 Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605 K GD+ + + + L +DG++Y+L + L S RG GE I +++ I Sbjct: 531 KAGDNYLAHACGKSNQQAVFLGSDGRSYSLESHTLPSARGQGEPITGRLNVAEGTSIRQV 590 Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVA 662 + + LV S G F+ + +++++ R GK + + ++ + V + D + Sbjct: 591 VMGEEDQLWLVGSDAGYGFVCKGTDLLSKNRSGKALVNLPENAEIMAPQAVNDLESDEIL 650 Query: 663 VVGENRKLLIFSIDQIPEMSRGKG---VRLQSYKDGGISDVIC--FKICEGLTWIDSAG- 716 + ++L+F I +P++ +GKG + + + K +V+ + +G+T AG Sbjct: 651 AITNQGRMLLFPIKDLPQLGKGKGNKIINIPAAKAKAREEVVSHLMALPKGVTITLYAGK 710 Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746 R DL + G+RG G L+P+G R Sbjct: 711 RKLGLKPADLDNYRGERGRRGGLLPRGLQR 740 >gi|289662944|ref|ZP_06484525.1| DNA topoisomerase IV subunit A [Xanthomonas campestris pv. vasculorum NCPPB702] gi|289670196|ref|ZP_06491271.1| DNA topoisomerase IV subunit A [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 747 Score = 512 bits (1319), Expect = e-143, Method: Compositional matrix adjust. Identities = 277/735 (37%), Positives = 432/735 (58%), Gaps = 21/735 (2%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 + LR E YL Y++ + +RA+P L DG KPV RRII AMSE+GL+ A KKSAR V Sbjct: 15 LPLREYAERAYLDYSMYVVLDRALPFLGDGLKPVQRRIIFAMSELGLNAAAKPKKSARTV 74 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQ 138 G+VIGK HPHGD + Y++LV +AQPF RYPLI GQGNFG+ D S AA RYTE+++T Sbjct: 75 GDVIGKYHPHGDSACYEALVLMAQPFSYRYPLIEGQGNFGSTDDPKSFAAMRYTESKLTP 134 Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198 +AE++L + + D+ ++ EP P++ P+LL NGT+GIAVGMAT +P HN+ E Sbjct: 135 IAEVLLGEISQGTTDWAPNFDGTLEEPTWLPARLPHLLLNGTTGIAVGMATDVPPHNLNE 194 Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258 I A L L+DNP+ ++ +L E+++GPD+PT I+ + Y G G R RA + Sbjct: 195 IVSALLRLLDNPDATVAELCEHVLGPDYPTTAEIITPAADLRAIYETGHGSVRARATYKK 254 Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES--AEDVRIVLFPK 316 E IV+ +PYQV S++IE+IA+ + AK++P LEDIRDES VR+VL P+ Sbjct: 255 EHAN-----IVIDALPYQVSPSKVIEQIAQQMRAKKLPWLEDIRDESDHTSPVRVVLVPR 309 Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376 + +D + LM +F+ +D+E + N+NV+ + PQV L +L EWL R + + RR Sbjct: 310 SNRVDAEQLMGHLFVTTDLERSYRCNLNVIGLDGRPQVKNLRQLLSEWLTFRSDTVTRRL 369 Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRL 436 + R+Q ++RR+ +L+GLLIA+LN+DE+I I+R+ED+PKPV++SRF+L+E Q + IL +L Sbjct: 370 NHRLQKVERRLHLLEGLLIAFLNLDEVIRIVRSEDEPKPVLISRFALSEEQAEYILETKL 429 Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496 R L +LEE +I+ E + L E+ +I ++L S K + ++ + E+ + + G R Sbjct: 430 RQLARLEEMKIRGEQEALAKERAQIMAILES-KTKLKKLIKD-----ELIADAKKFGDAR 483 Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALH 556 + A +A + M+ EP+TVV+S +GW+R+ K H VD + + +++GD L A+ Sbjct: 484 RSPLVQRDAAQAIDETEMVASEPMTVVLSEKGWVRAAKGHEVDPAGMSYRDGDGLLAAVR 543 Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLV 616 + +T ++ L ++G+AY+ L S RG+GE + D+ + ++ Sbjct: 544 SRSTHQVAFLDSEGRAYSTAVHTLPSARGNGEPLTGRFSPASGAAFQVMASADNATRFVL 603 Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---DHVAVVGENRKLLIF 673 SS G F+ + + GK L +++ + +V+ D + V LL Sbjct: 604 ASSHGYGFVTRFENLTGRNKAGKAMLNLTAGSHVLTPAQVSNPQTDRIVAVTSAGNLLAV 663 Query: 674 SIDQIPEMSRGKG---VRLQSYKDGGISDVICFKICEGLT-WIDSAGRSYNRSENDLLGW 729 +PE+ +GKG + + K G V + G T + S R+ + S DL + Sbjct: 664 PASDVPELDKGKGNKIIEIPKAKLGTERVVAVVAVAPGNTLLVRSGARTMSLSFKDLDTY 723 Query: 730 LGKRGGVGSLVPKGF 744 +G R GSL+P+G+ Sbjct: 724 VGARASRGSLLPRGW 738 >gi|260771247|ref|ZP_05880174.1| topoisomerase IV subunit A [Vibrio furnissii CIP 102972] gi|260613844|gb|EEX39036.1| topoisomerase IV subunit A [Vibrio furnissii CIP 102972] Length = 757 Score = 512 bits (1319), Expect = e-143, Method: Compositional matrix adjust. Identities = 280/750 (37%), Positives = 449/750 (59%), Gaps = 23/750 (3%) Query: 9 SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68 S + + V+ + LR E+ YL Y++ I +RA+P + DG KPV RRII+AMSE+GL Sbjct: 2 STEITYDGVEQLPLRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61 Query: 69 GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAA 127 A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S A Sbjct: 62 SAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFA 121 Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187 A RYTEA++++ AE++L + + VD++ ++ EP + P++ P++L NG +GIAVGM Sbjct: 122 AMRYTEAKLSKFAEVLLSELGQGTVDWQPNFDGTMKEPKMLPARLPHILLNGVTGIAVGM 181 Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247 AT IP HNV+E+ +A + LIDNP+ + L++Y+ GPD+PT I+ + + + YR GR Sbjct: 182 ATDIPPHNVREVADATIHLIDNPQAGLSDLMQYVKGPDYPTEAEIISPQVELEKVYRTGR 241 Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307 G ++RA W E +V+T +P+QV ++L+E+IA + AK++P++ED+RDES Sbjct: 242 GSVKMRAVWHKEGAD-----VVITALPHQVSGAKLLEQIANQMRAKKLPMVEDLRDESDH 296 Query: 308 D--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365 + RIV+ P++ +D DLLM +F +D+E + +N+N++ + PQV L IL EW+ Sbjct: 297 ENPTRIVIVPRSNRVDCDLLMNHLFASTDLERSYRVNLNMIGLDNRPQVKGLVSILSEWI 356 Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425 RRE + R +R+ + R+ IL+GLLIAYLNIDE+I IIR ED PK V+++RF +++ Sbjct: 357 QFRRETVRSRLQYRLDKVLARLHILEGLLIAYLNIDEVIEIIRTEDDPKAVLMARFGISD 416 Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485 Q DAIL+ +LR L KLEE +I+ E D L E++K++ LL S ++ + E++ E Sbjct: 417 IQADAILDTKLRHLAKLEEMKIRGEQDELEKERKKLEELLGSERRLNTLLKKELKADAEK 476 Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545 + RR+ E A KA ++ ++ E ITVV+S +GWIR K H VD L++ Sbjct: 477 YGDD-----RRSPLVEREEA-KALTERDLMPSEAITVVLSEKGWIRHAKGHEVDCEGLNY 530 Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605 K GD+ + + + L +DG++Y+L + L S RG GE I +++ I Sbjct: 531 KAGDNYLAHACGKSNQQAVFLGSDGRSYSLESHTLPSARGQGEPITGRLNVAEGTSIRQV 590 Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVA 662 + + LV S G F+ + +++++ R GK + + ++ + V + D + Sbjct: 591 VMGEEDQLWLVGSDAGYGFVCKGTDLLSKNRSGKALVNLPENAEIMAPQAVNDLESDEIL 650 Query: 663 VVGENRKLLIFSIDQIPEMSRGKG---VRLQSYKDGGISDVIC--FKICEGLTWIDSAG- 716 + ++L+F I +P++ +GKG + + + K +V+ + +G+T AG Sbjct: 651 AITNQGRMLLFPIKDLPQLGKGKGNKIINIPAAKAKAREEVVSHLMALPKGVTITLYAGK 710 Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746 R DL + G+RG G L+P+G R Sbjct: 711 RKLGLKPADLDNYRGERGRRGGLLPRGLQR 740 >gi|291618912|ref|YP_003521654.1| ParC [Pantoea ananatis LMG 20103] gi|291153942|gb|ADD78526.1| ParC [Pantoea ananatis LMG 20103] Length = 771 Score = 511 bits (1317), Expect = e-142, Method: Compositional matrix adjust. Identities = 277/750 (36%), Positives = 445/750 (59%), Gaps = 34/750 (4%) Query: 12 LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71 L ++ + ++L E YL Y++ I +RA+P + DG KPV RRI++AMSE+GL+ A Sbjct: 18 LTQDGAERLALHTFTENAYLNYSMYVIMDRALPYIGDGLKPVQRRIVYAMSELGLNATAK 77 Query: 72 FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYR 130 FKKSAR VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S AA R Sbjct: 78 FKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMR 137 Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190 YTE+R+++ AE++L + + D+ ++ EP + P++ PN+L NGT+GIAVGMAT Sbjct: 138 YTESRLSKYAEVLLGELGQGTADWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATD 197 Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250 IP HN++E+ +AA+ALID+P+ S++ LLE + GPDFPT I+ R+ I + Y+ GRG Sbjct: 198 IPPHNLREVAQAAIALIDDPKTSLDALLEIVQGPDFPTEAEIITPRDEIRKIYQNGRGSV 257 Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-- 308 R RA W E+ +V+T +P+QV +R++E+IA + K++P++ED+RDES + Sbjct: 258 RQRAVWKKED-----GEVVITALPHQVSGARVLEQIANQMRNKKLPMVEDLRDESDHENP 312 Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368 R+V+ P++ +D + +M +F +D+E + +N+N++ + P V L IL EWL R Sbjct: 313 TRLVIVPRSNRVDLEQVMNHLFATTDLEKSYRINLNMIGLDNRPAVKNLLEILSEWLVFR 372 Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQV 428 R+ + RR ++R+ + RR+ IL GLL+A+LNIDE+I IIR ED+PKPV++SRF ++E Q Sbjct: 373 RDTVRRRLNYRLDRVLRRLHILDGLLVAFLNIDEVIHIIRTEDEPKPVLMSRFDISETQA 432 Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488 +AIL L+LR L KLEE +I+ E L E++++ ++L S ++ + KE+ + Sbjct: 433 EAILELKLRHLAKLEEMKIRGEQSELEKERDQLQAILASERKMNTLLK------KELQAD 486 Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548 S + G R + KA + ++ EP+T+V+S GW+RS K H +D + L +K G Sbjct: 487 SNNFGDDRRSPLREREEAKALSETELVPSEPVTIVLSQMGWVRSAKGHDIDPAGLSYKAG 546 Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608 DS A + + + + G++YTL +L S RG GE + + + + Sbjct: 547 DSYLAAARGKSNQPVAFIDSTGRSYTLDPTSLPSARGQGEPLTGKLTPPPGAVMEQVLME 606 Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--KLVVKVTGDHVAVVGE 666 +LL+ S G FI +++I+ R GK L + ++ + V D + + + Sbjct: 607 PEEQRLLMASDAGYGFICTFNDLISRNRAGKALLTLPENARVMTPMAVHHEDDMLLAITQ 666 Query: 667 NRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTW--IDSAGRSYN---- 720 ++L+F + ++P+MS+GKG ++ S I + L W I G + Sbjct: 667 AGRMLMFPVGELPQMSKGKGNKIIS-----IPSADAASGADKLAWLMILPPGSAITLHVG 721 Query: 721 ------RSENDLLGWLGKRGGVGSLVPKGF 744 RSE +L + RG G+L+P+G Sbjct: 722 KRKLLLRSE-ELQKFRADRGRRGTLLPRGL 750 >gi|154235|gb|AAA27180.1| parC [Salmonella enterica subsp. enterica serovar Typhimurium] Length = 752 Score = 511 bits (1317), Expect = e-142, Method: Compositional matrix adjust. Identities = 271/740 (36%), Positives = 447/740 (60%), Gaps = 29/740 (3%) Query: 23 RFALEE----RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78 R AL E YL Y++ I +RA+P + DG KPV RRI++AMSE+GL+ A FKKSAR Sbjct: 7 RLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKFKKSART 66 Query: 79 VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMT 137 VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S AA RYTE+R++ Sbjct: 67 VGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLS 126 Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197 + AEL+L + + D+ ++ EP + P++ PN+L NGT+GIAVGMAT IP HN++ Sbjct: 127 KYAELLLSELGQGTADWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLR 186 Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257 E+ +AA+ LI+ P+ ++++LL+ + GPD+PT I+ R I + Y GRG R+ A W Sbjct: 187 EVAKAAITLIEQPKTTLDQLLDIVQGPDYPTEAEIITPRAEIRKIYENGRGSVRIGAVWT 246 Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFP 315 E+ +V++ +P+QV ++++E+IA + K++P+++D+RDES + R+V+ P Sbjct: 247 KED-----GAVVISALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVP 301 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 ++ +D + +M +F +D+E + +N+N++ + P V L IL EWLA RR+ + RR Sbjct: 302 RSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEWLAFRRDTVRRR 361 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435 ++R++ + +R+ IL+GLL+A+LNIDE+I IIR+ED+PKP ++SRF ++E Q +AIL L+ Sbjct: 362 LNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRSEDEPKPALMSRFGISETQAEAILELK 421 Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495 LR L KLEE +I+ E D L E++++ +L S ++ + E++ + + R Sbjct: 422 LRHLAKLEEMKIRGEQDELEKERDQLQGILASERKMNTLLKKELQADADAYGDD-----R 476 Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555 R+ E A KA + M+ EP+T+V+S GW+RS K H +D L++K GDS K A+ Sbjct: 477 RSPLREREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAV 535 Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615 + ++ + T G++Y + L S RG GE + + L + + KLL Sbjct: 536 KGKSNQPVVFIDTTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVEHMLMEGDDQKLL 595 Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--KLVVKVTGDHVAVVGENRKLLIF 673 + S G F+ ++++A R GKT + + + LV++ D + + + ++L+F Sbjct: 596 MASDAGYGFVCTFNDLVARNRAGKTLITLPENAHVMPPLVIEDEHDMLLAITQAGRMLMF 655 Query: 674 SIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDL 726 +D +P++S+GKG ++ + D G++ + LT I R +L Sbjct: 656 PVDSLPQLSKGKGNKIINIPSAEAAKGDDGLAHLYVLPPQSTLT-IHVGKRKIKLRPEEL 714 Query: 727 LGWLGKRGGVGSLVPKGFPR 746 +G+RG G+L+ +G R Sbjct: 715 QKVVGERGRRGTLM-RGLQR 733 >gi|171463637|ref|YP_001797750.1| DNA topoisomerase IV, A subunit [Polynucleobacter necessarius subsp. necessarius STIR1] gi|171193175|gb|ACB44136.1| DNA topoisomerase IV, A subunit [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 791 Score = 511 bits (1317), Expect = e-142, Method: Compositional matrix adjust. Identities = 284/738 (38%), Positives = 423/738 (57%), Gaps = 36/738 (4%) Query: 12 LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71 L E+ +++L E YL YA+S +K RA+PD+ DG KPV RRI+ +MSEMGL A Sbjct: 30 LNEDGKDSLTLAVYAERAYLDYAISVVKGRALPDVSDGQKPVQRRILFSMSEMGLRADAK 89 Query: 72 FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131 KSAR+VG+V+GK HPHGDQS YD+LVRLAQ F RYPLI GQGNFG+ DGD AAA RY Sbjct: 90 PVKSARVVGDVLGKFHPHGDQSAYDALVRLAQSFSLRYPLIDGQGNFGSRDGDGAAAMRY 149 Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191 TEAR+T++A L+L +DE VDF Y+ EP + P++ P +L NG SGIAVGMAT I Sbjct: 150 TEARLTKIAGLLLSEIDEGTVDFAPNYDGSFQEPKLLPARLPFVLLNGASGIAVGMATEI 209 Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251 PSHN++E+ AA+AL+ +P++S +LLE + GPD+P GG I+ S I + Y GRG + Sbjct: 210 PSHNLREVALAAVALMKSPKMSTSELLEIMPGPDYPGGGQIISSAAEIAQIYETGRGSIK 269 Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELI-----IAKR------------ 294 VRARW +EE+ RG W IVV E+P R++++I E+ + K+ Sbjct: 270 VRARWSIEELARGQWQIVVNELPPATSSQRVLQEIEEITNPKVKVGKKTLTLEQNNLKST 329 Query: 295 -IPLLEDIRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRV 351 + +L+ +RDES++D VR+V PK++++D + + + + +E+ P+N+ ++ Sbjct: 330 ILNVLDGVRDESSKDAAVRLVFEPKSKNIDVNEFVNLLLAHTSLESNAPMNLVMIGNDDR 389 Query: 352 PQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED 411 P+ L IL EW+ R + RR+ R+ + R+ IL+G L LNID++I IIRN D Sbjct: 390 PRQKGLKEILSEWIVFRVTTVTRRTQHRLDKVKNRMHILEGRLTVLLNIDKVIKIIRNSD 449 Query: 412 KPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQ 471 +PK ++ F L++ Q + IL++RLR L +LE +I+ EL L E++ ++ LL S Sbjct: 450 EPKADLIKEFKLSDRQAEDILDIRLRQLARLEGIKIEQELKELKTERDDLEGLLQS---- 505 Query: 472 WNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR 531 A R +KEI S D G R T + DK + + + EP+TV++S +GW+R Sbjct: 506 --DTALRKRIIKEIESDMKDFGDDRRTLIQ---EDKRAVAETKVIDEPVTVIVSQKGWVR 560 Query: 532 SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ 591 + H D + FK GD+L T D I +DG+ YT+P L RG G + Sbjct: 561 VRQGHEHDPTQFSFKAGDALYATFEVRTVDVIQGFGSDGRVYTVPVSELPGARGDGSPLT 620 Query: 592 LLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFL----KVSSE 647 ++L +V + S +L+ + G F+ +++ + GK+FL KV + Sbjct: 621 SFVNLASGSQMVAYYAGQSDDLVLLSTKAGFGFLANVADMTTRNKAGKSFLSMDAKVPGD 680 Query: 648 EKMKLV-VKVTGDHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDGGISDVICFKI 705 + V+V VA + E KLL+F +D++ + + GKGV L D Sbjct: 681 APLGAAKVRVGMKQVACLSEASKLLVFPLDELKRLPTGGKGVILMGLDDNEFLASAIAVG 740 Query: 706 CEGLTWIDSAGRSYNRSE 723 +G T+ AGR+ +E Sbjct: 741 PDGATY-SGAGRAGKPTE 757 >gi|269960216|ref|ZP_06174591.1| DNA topoisomerase 4 subunit A [Vibrio harveyi 1DA3] gi|269835023|gb|EEZ89107.1| DNA topoisomerase 4 subunit A [Vibrio harveyi 1DA3] Length = 762 Score = 511 bits (1317), Expect = e-142, Method: Compositional matrix adjust. Identities = 282/750 (37%), Positives = 450/750 (60%), Gaps = 23/750 (3%) Query: 9 SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68 S + + V+ + +R E+ YL Y++ I +RA+P + DG KPV RRII+AMSE+GL Sbjct: 2 STEITYDGVEQLPMRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61 Query: 69 GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAA 127 A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S A Sbjct: 62 SAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFA 121 Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187 A RYTEA++++ AE++L + + V+++ ++ EP + P++ P++L NG +GIAVGM Sbjct: 122 AMRYTEAKLSKFAEVLLGELGQGTVEWQPNFDGTMKEPQMLPARLPHILLNGVTGIAVGM 181 Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247 AT IP HNV+E+ +A + LIDNP+ + +++++ GPD+PT I + I + YR GR Sbjct: 182 ATDIPPHNVREVADATIHLIDNPKAELPDVMQFVKGPDYPTEAEITSPQADIEKIYRNGR 241 Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307 G ++RA W E GS IV+T +P+QV ++L+E+IA + AK++P+++D+RDES Sbjct: 242 GSIKMRAVWHKE----GS-DIVITSLPHQVSGAKLLEQIANQMRAKKLPMVDDLRDESDH 296 Query: 308 D--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365 + RIV+ PK+ +D DLLM +F +D+E + +N+N++ + PQV L IL EW+ Sbjct: 297 ENPTRIVVVPKSNRVDCDLLMNHLFASTDLERSYRVNLNMIGLDNRPQVKGLVQILSEWI 356 Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425 RR + RR R+ + R+ IL+GLL+AYLN+DE+I IIR ED PK V++ RF +T+ Sbjct: 357 EFRRTTVRRRLQHRLDKVMARLHILEGLLVAYLNLDEVIEIIRTEDDPKAVLMERFGITD 416 Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485 Q DAIL+ +LR L KLEE +I+ E D L E+EK++ LL S ++ + EI+ E Sbjct: 417 IQADAILDTKLRHLAKLEEMKIRGEQDELEKEREKLEQLLGSERRLNTLLKKEIKADAEK 476 Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545 + RR+ E + A KA ++ ++ EPITVV+S +GWIR K H VD L + Sbjct: 477 YGDD-----RRSPLVERAEA-KALTERDLVPSEPITVVLSEKGWIRHAKGHDVDAEGLSY 530 Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605 K GD+ + + + +DG++Y+L + +L S R GE I +++ I Sbjct: 531 KSGDNYLAHARGKSNQQAVFFGSDGRSYSLESHSLPSARSQGEPITGRLNITAGSSIRQV 590 Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVA 662 + + LV S G F+ + SE+++ R GK + + + ++ K + + D + Sbjct: 591 IMGEDEQLWLVGSDAGYGFVCKGSELLSKNRSGKALVTLPANSEVMTPKTIADLDSDEIL 650 Query: 663 VVGENRKLLIFSIDQIPEMSRGKG---VRLQSYKDGGISDVIC--FKICEGLTWIDSAG- 716 + ++L+F I +P++++GKG + + + K +V+ + +G + AG Sbjct: 651 AITNQGRMLLFPIKDLPQLAKGKGNKIINIPAAKAKEREEVLSHLMALPQGASLTLYAGK 710 Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746 R DL + G+RG GSL+P+G R Sbjct: 711 RKLGLKPADLENFRGERGRRGSLLPRGLQR 740 >gi|90411889|ref|ZP_01219897.1| DNA topoisomerase IV subunit A [Photobacterium profundum 3TCK] gi|90327147|gb|EAS43519.1| DNA topoisomerase IV subunit A [Photobacterium profundum 3TCK] Length = 756 Score = 511 bits (1317), Expect = e-142, Method: Compositional matrix adjust. Identities = 275/743 (37%), Positives = 448/743 (60%), Gaps = 25/743 (3%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 + V+ + LR E+ YL Y++ I +RA+P + DG KPV RRII+AMSE+GL+ A +KK Sbjct: 7 DGVEQLPLRKFTEDAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAMSELGLNATAKYKK 66 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTE 133 SAR VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S AA RYTE Sbjct: 67 SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 126 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 +R+++ +E++L + + D+ ++ +EP + P++ P++L NG +GIAVGMAT IP Sbjct: 127 SRLSRFSEVLLSELGQGTADWVPNFDGTMNEPKMLPARLPHILLNGITGIAVGMATDIPP 186 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN +E+ AA+ L+DNP+ +++L+E++ GPD+PT I+ + + Y+ GRG R+R Sbjct: 187 HNAREVANAAVHLLDNPKADLDELMEFVKGPDYPTEAEIITPVHDLKKVYKSGRGSIRMR 246 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRI 311 A W E + IV+T +P+QV ++L+E+IA + AK++P++ED+RDES + RI Sbjct: 247 AIWHKE-----NGDIVITALPHQVSGAKLLEQIANQMRAKKLPMVEDLRDESDHENPTRI 301 Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371 V+ P++ +D + LM +F +D+E F +N+N+L + P+V L I+ EWL RR Sbjct: 302 VIVPRSNRIDSEQLMNHLFASTDLEKSFRVNLNMLGLDGRPRVKGLLEIITEWLVFRRST 361 Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431 + RR +R+ + R+ IL+GLL AYLNIDE+I IIRNE+ PK ++SRF L+ Q DAI Sbjct: 362 VRRRLQYRLDKVVARLHILEGLLAAYLNIDEVIEIIRNEENPKAELMSRFELSVIQADAI 421 Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491 L ++LR L KLEE +I+ E D L E++ ++ LL S ++ I EI+ E + Sbjct: 422 LEIKLRQLAKLEEIKIRGEQDELAKERDYLEKLLGSERRLSTLIKKEIQADAEKYGDD-- 479 Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551 RR+ E + A KA ++ +I E ITVV+S +GWIR K + VD ++L +K GD+ Sbjct: 480 ---RRSPLVERAEA-KALTERDLIPSEAITVVLSEKGWIRHAKGYDVDPTSLSYKSGDNY 535 Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611 + +L+ +DG++Y L + +L S R GE + ++L ++ + D Sbjct: 536 LAHARGKSNLPAILIGSDGRSYALESHSLPSARSQGEPVTGRLNLTPGTNLRQVLMADDE 595 Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVAVVGENR 668 L+ S G FI + +++++ + GK L V + K+ + + + D + V+ Sbjct: 596 QMWLMGSDAGYGFICKSTDMVSKNKSGKALLTVPEKAKVMAPQPISNLDTDEILVITNEG 655 Query: 669 KLLIFSIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTWIDSAGRSYNR 721 ++L+F I +P++ +GKG ++ ++ +S +I E +T I + R Sbjct: 656 RMLLFPIKDLPQLGKGKGNKIINIPSARSKSREEFLSQLIVLPQGEQVT-IHAGKRKMGL 714 Query: 722 SENDLLGWLGKRGGVGSLVPKGF 744 +DL + G+RG G+++P+G Sbjct: 715 KASDLDNFRGERGRRGTMLPRGL 737 >gi|326560568|gb|EGE10949.1| DNA topoisomerase IV subunit A [Moraxella catarrhalis 103P14B1] gi|326562212|gb|EGE12540.1| DNA topoisomerase IV subunit A [Moraxella catarrhalis 7169] gi|326572002|gb|EGE22004.1| DNA topoisomerase IV subunit A [Moraxella catarrhalis BC8] gi|326573949|gb|EGE23899.1| DNA topoisomerase IV subunit A [Moraxella catarrhalis O35E] gi|326576270|gb|EGE26185.1| DNA topoisomerase IV subunit A [Moraxella catarrhalis CO72] Length = 745 Score = 511 bits (1317), Expect = e-142, Method: Compositional matrix adjust. Identities = 275/727 (37%), Positives = 446/727 (61%), Gaps = 19/727 (2%) Query: 27 EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86 E YL YA+ I +RA+P + DG KPV RRI++AMSE+GL A KKSAR VG+V+GK Sbjct: 15 EYAYLNYAMYVIMDRALPHIADGLKPVQRRIVYAMSELGLKHTAKPKKSARTVGDVLGKY 74 Query: 87 HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQVAELILQ 145 HPHGD + Y+++V +AQPF RYPLI+GQGN+G+ D S AA RYTEA M++ A+++L Sbjct: 75 HPHGDSACYEAMVLMAQPFSYRYPLITGQGNWGSPDDPKSFAAMRYTEANMSRYADILLG 134 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 +++ VD++D ++ SEPV P++ PN+L NGT+GIAVGMAT IP HN+ E+ +A + Sbjct: 135 EIEQGTVDWQDNFDGSLSEPVTLPARLPNILLNGTTGIAVGMATDIPPHNLHEVVKACIR 194 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265 L+ NPE+S ++L++ + PD PT I+ + ++ Y G+G +++RA + + + + Sbjct: 195 LLKNPELSTKQLVQTLPAPDLPTTAEIITPKNDMIAMYETGKGSYKMRATYHTDP--KQN 252 Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES--AEDVRIVLFPKNRSLDPD 323 +++ +PYQV ++++E+IA+L++ K++P + +IRDES RIV+ K L+ D Sbjct: 253 HLVIINALPYQVSGNKVVEQIAKLMMDKKLPWVTEIRDESDNLNPCRIVIELKKSKLNID 312 Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383 +M +F +D+ET + +NMN++ + P+V L IL EWL+ R+ V+ RR +R+ I Sbjct: 313 KIMSHLFANTDLETSYRVNMNMIGINGKPEVKNLKSILLEWLSVRKSVVIRRLQYRLDKI 372 Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLE 443 + R+ IL GLLIAYLNIDEII IIR + PK +++RF LT+ Q +AIL+++LR L KLE Sbjct: 373 NERLHILAGLLIAYLNIDEIIDIIRTAEDPKIELMTRFGLTQTQANAILDIKLRQLAKLE 432 Query: 444 EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVS 503 E ++ +E D L AE+ I LN+ + + + E+ + + G R + V Sbjct: 433 EIELTAEHDRLEAERLLISEQLNNPEMLTKLL------IDELTADAKTHGDARRSPV-VQ 485 Query: 504 RADKATLQQA-MIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDR 562 RA+ ++L+ +I EPIT ++S GWIR+ K H D + ++++ GD+ +T+R Sbjct: 486 RAESSSLKAVDLIASEPITAILSQAGWIRAAKGHHADPAEMNYRTGDAYLTHALGKSTER 545 Query: 563 ILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST---CKLLVVSS 619 ++L+ G++Y L + +L S R G+ I L++L I Y+ T +L+ SS Sbjct: 546 LILVDNTGRSYGLDSIHLPSARTQGDPITSLLNLPAGAKIDQLLFYNQTNGSPNVLMASS 605 Query: 620 KGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQI 678 G FI + + + + GK+ + ++ + +VV D VAV N LLIF+ D++ Sbjct: 606 LGYGFINQLANLDTAQKSGKSSINLADGVLLPIVVMQDDDSLVAVSLSNGNLLIFASDEL 665 Query: 679 PEMSRGKGVRLQSYKDG-GISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVG 737 P++++GKG +L + K G I+ + + L I + R+ + ND+ ++ R G Sbjct: 666 PKLAKGKGNKLANLKAGETITAITALSDTDALV-ITAGKRTLTLNPNDIANYIAHRANRG 724 Query: 738 SLVPKGF 744 + +PKGF Sbjct: 725 NPLPKGF 731 >gi|104783892|ref|YP_610390.1| DNA topoisomerase IV subunit A [Pseudomonas entomophila L48] gi|95112879|emb|CAK17607.1| DNA topoisomerase IV, subunit A [Pseudomonas entomophila L48] Length = 751 Score = 511 bits (1316), Expect = e-142, Method: Compositional matrix adjust. Identities = 277/746 (37%), Positives = 446/746 (59%), Gaps = 27/746 (3%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 E V+ SL E+ YL Y++ I +RA+P + DG KPV RRI++AMSE+GLD + KK Sbjct: 9 EGVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIVYAMSELGLDADSKHKK 68 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTE 133 SAR VG+V+GK HPHGD + Y+++V +AQPF RY L+ GQGN+G D S AA RYTE Sbjct: 69 SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPDDPKSFAAMRYTE 128 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 AR+++ +E++L + + VD+ ++ EP V P++ PN+L NGT+GIAVGMAT +P Sbjct: 129 ARLSRYSEVLLSELGQGTVDWVPNFDGTLQEPAVLPARLPNILLNGTTGIAVGMATDVPP 188 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN++E+ A + L+D P+ ++E+L E+I GPD+PT IV R I++ Y G+G R+R Sbjct: 189 HNLREVASACVRLLDEPKATLEQLCEHIQGPDYPTEAEIVTPRADILKLYETGKGSIRMR 248 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRI 311 A + VE+ I+VT +P+QV ++++E+IA + AK++P++ D+RDES + RI Sbjct: 249 AVYRVED-----GDIIVTALPHQVSGAKVLEQIAAQMQAKKLPMVADLRDESDHENPCRI 303 Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371 V+ P++ +D LM+ +F +D+E+ + +N+N++ + PQ+ L +L EWL R Sbjct: 304 VIIPRSNRVDAAELMQHLFATTDLESTYRVNVNIIGLDGRPQLKSLRALLLEWLEFRIGT 363 Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431 + RR R+ +++R+ +L GLL A+LN+DE+I IIR E+ PK +++RF LTE Q D I Sbjct: 364 VRRRLQHRLDKVEKRLHLLDGLLTAFLNLDEVIHIIRTEEHPKQALIARFDLTEIQADYI 423 Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491 L RLR L +LEE +I+ E D LL E++++ +LL S + + E+ E E + Sbjct: 424 LETRLRQLARLEEMKIRGEQDELLKEQKRLTTLLGSDAKLRKLVRSELLEDAETYGDD-- 481 Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551 RR+ E + A KA + ++ EP+TVV+S +GW+R K H +D + L +K GD Sbjct: 482 ---RRSPIVERAEA-KALSENELMPTEPVTVVLSEKGWVRCAKGHDIDATGLSYKAGDGF 537 Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611 K A + +L+ + G++Y+L A +L S RG GE + + + + Sbjct: 538 KAAAAGRSNQFAVLIDSTGRSYSLAAHSLPSARGQGEPLTGRLTPPPGATFECVLLPEDE 597 Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVAVVGENR 668 +V S G F+V+ ++ A + GK L + + K+ + V D +A V Sbjct: 598 ALYVVASDAGYGFVVKGEDLQAKNKAGKGLLSLPNGAKVMTPRPVASREQDWLAAVTTEG 657 Query: 669 KLLIFSIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTWIDSAG-RSYN 720 +LL+F + +P++ +GKG ++ + ++ ++D+ I EG T + AG R+ + Sbjct: 658 RLLVFKVADLPQLGKGKGNKIIGVPGDRVASREEFVTDLAV--ISEGSTLVLQAGKRTLS 715 Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPR 746 +DL + G+RG GS +P+GF R Sbjct: 716 LKPDDLEHYKGERGRRGSKLPRGFQR 741 >gi|326568448|gb|EGE18528.1| DNA topoisomerase IV subunit A [Moraxella catarrhalis BC7] Length = 745 Score = 511 bits (1316), Expect = e-142, Method: Compositional matrix adjust. Identities = 275/727 (37%), Positives = 446/727 (61%), Gaps = 19/727 (2%) Query: 27 EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86 E YL YA+ I +RA+P + DG KPV RRI++AMSE+GL A KKSAR VG+V+GK Sbjct: 15 EYAYLNYAMYVIMDRALPHIADGLKPVQRRIVYAMSELGLKHTAKPKKSARTVGDVLGKY 74 Query: 87 HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQVAELILQ 145 HPHGD + Y+++V +AQPF RYPLI+GQGN+G+ D S AA RYTEA M++ A+++L Sbjct: 75 HPHGDSACYEAMVLMAQPFSYRYPLITGQGNWGSPDDPKSFAAMRYTEANMSRYADILLG 134 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 +++ VD++D ++ SEPV P++ PN+L NGT+GIAVGMAT IP HN+ E+ +A + Sbjct: 135 EIEQGTVDWQDNFDGSLSEPVTLPARLPNILLNGTTGIAVGMATDIPPHNLHEVVKACIR 194 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265 L+ NPE+S ++L++ + PD PT I+ + ++ Y G+G +++RA + + + + Sbjct: 195 LLKNPELSTKQLVQTLPAPDLPTTAEIITPKNDMIAMYETGKGSYKMRATYHTDP--KQN 252 Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES--AEDVRIVLFPKNRSLDPD 323 +++ +PYQV ++++E+IA+L++ K++P + +IRDES RIV+ K L+ D Sbjct: 253 HLVIINALPYQVSGNKVVEQIAKLMMDKKLPWVTEIRDESDNLNPCRIVIELKKSKLNID 312 Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383 +M +F +D+ET + +NMN++ + P+V L IL EWL+ R+ V+ RR +R+ I Sbjct: 313 KIMSHLFANTDLETSYRVNMNMIGINGKPEVKNLKSILLEWLSVRKSVVIRRLQYRLDKI 372 Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLE 443 + R+ IL GLLIAYLNIDEII IIR + PK +++RF LT+ Q +AIL+++LR L KLE Sbjct: 373 NERLHILAGLLIAYLNIDEIIDIIRTAEDPKIELMTRFGLTQTQANAILDIKLRQLAKLE 432 Query: 444 EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVS 503 E ++ +E D L AE+ I LN+ + + + E+ + + G R + V Sbjct: 433 EIELTAEHDRLEAERLLISEQLNNPEMLTKLL------IDELTADAKTHGDARRSPV-VQ 485 Query: 504 RADKATLQQA-MIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDR 562 RA+ ++L+ +I EPIT ++S GWIR+ K H D + ++++ GD+ +T+R Sbjct: 486 RAESSSLKAVDLIASEPITAILSQAGWIRAAKGHHADPAEMNYRTGDAYLTHALGKSTER 545 Query: 563 ILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST---CKLLVVSS 619 ++L+ G++Y L + +L S R G+ I L++L I Y+ T +L+ SS Sbjct: 546 LILVDNTGRSYGLDSIHLPSARTQGDPITSLLNLPAGAKIDQLLFYNQTNGSPNVLMASS 605 Query: 620 KGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQI 678 G FI + + + + GK+ + ++ + +VV D VAV N LLIF+ D++ Sbjct: 606 LGYGFINQLANLDTAQKSGKSSINLADGVLLPIVVMQDDDSLVAVSLSNGNLLIFASDEL 665 Query: 679 PEMSRGKGVRLQSYKDG-GISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVG 737 P++++GKG +L + K G I+ + + L I + R+ + ND+ ++ R G Sbjct: 666 PKLAKGKGNKLANLKAGETITAITALSDTDALV-ITAGKRTLTLNPNDIANYIAHRANRG 724 Query: 738 SLVPKGF 744 + +PKGF Sbjct: 725 NPLPKGF 731 >gi|84623543|ref|YP_450915.1| DNA topoisomerase IV subunit A [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188577141|ref|YP_001914070.1| DNA topoisomerase IV subunit A [Xanthomonas oryzae pv. oryzae PXO99A] gi|84367483|dbj|BAE68641.1| topoisomerase IV subunit A [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188521593|gb|ACD59538.1| DNA topoisomerase IV, A subunit [Xanthomonas oryzae pv. oryzae PXO99A] Length = 747 Score = 511 bits (1316), Expect = e-142, Method: Compositional matrix adjust. Identities = 277/735 (37%), Positives = 431/735 (58%), Gaps = 21/735 (2%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 + LR E YL Y++ + +RA+P L DG KPV RRII AMSE+GL+ A KKSAR V Sbjct: 15 LPLREYAERAYLDYSMYVVLDRALPFLGDGLKPVQRRIIFAMSELGLNAAAKPKKSARTV 74 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQ 138 G+VIGK HPHGD + Y++LV +AQPF RYPLI GQGNFG+ D S AA RYTE+++T Sbjct: 75 GDVIGKYHPHGDSACYEALVLMAQPFSYRYPLIEGQGNFGSTDDPKSFAAMRYTESKLTP 134 Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198 +AE++L + + D+ ++ EP P++ P+LL NGT+GIAVGMAT +P HN+ E Sbjct: 135 IAEVLLGELAQGTTDWAPNFDGTLEEPTWLPARLPHLLLNGTTGIAVGMATDVPPHNLNE 194 Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258 I A L L+DNP+ ++ +L E+++GPD+PT I+ + Y G G R RA + Sbjct: 195 IVSALLRLLDNPDATVAELCEHVLGPDYPTTAEIITPAADLRAIYETGHGSVRARATYKK 254 Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES--AEDVRIVLFPK 316 E IV+ +PYQV S++IE+IA+ + AK++P LEDIRDES VR+VL P+ Sbjct: 255 EHAN-----IVIDALPYQVSPSKVIEQIAQQMRAKKLPWLEDIRDESDHTSPVRVVLVPR 309 Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376 + +D + LM +F+ +D+E + N+NV+ + PQV L +L EWL R + + RR Sbjct: 310 SNRVDAEQLMGHLFVTTDLERSYRCNLNVIGLDGRPQVKNLRQLLSEWLTFRSDTVTRRL 369 Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRL 436 R+Q ++RR+ +L+GLLIA+LN+DE+I I+R+ED+PKPV++SRF+L+E Q + IL +L Sbjct: 370 DHRLQKVERRLHLLEGLLIAFLNLDEVIRIVRSEDEPKPVLISRFALSEEQAEYILETKL 429 Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496 R L +LEE +I+ E + L E+ +I ++L S + I E+ + F + RR Sbjct: 430 RQLARLEEMKIRGEQEALAKERAQIMAILESKTKLKKLIKDELTADAKKFGDA-----RR 484 Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALH 556 + + A +A + M+ EP+TVV+S +GW+R+ K H VD + + +++GD L A+ Sbjct: 485 SPLVQRGAA-QAIDETEMVASEPMTVVLSEKGWVRAAKGHEVDPAGMSYRDGDGLLAAVR 543 Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLV 616 + +T ++ L ++G+AY+ L S RG+GE + D+ + ++ Sbjct: 544 SRSTHQVAFLDSEGRAYSTAVHTLPSARGNGEPLTGRFSPASGAAFQVMASADNATRFVL 603 Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---DHVAVVGENRKLLIF 673 SS G F+ + + GK L +++ + +V+ D + V LL Sbjct: 604 ASSHGYGFVTRFENLTGRNKAGKAMLNLTTGSHVLTPAQVSNPQTDRIVAVTSAGNLLAV 663 Query: 674 SIDQIPEMSRGKG---VRLQSYKDGGISDVICFKICEGLT-WIDSAGRSYNRSENDLLGW 729 ++PE+ +GKG + + K G V + G T + S R+ + S DL + Sbjct: 664 PATEVPELDKGKGNKIIEIPKAKLGTERVVAVVAVAPGNTLLVRSGARTMSLSFKDLDTY 723 Query: 730 LGKRGGVGSLVPKGF 744 +G R G+L+P+G+ Sbjct: 724 VGARASRGALLPRGW 738 >gi|221211614|ref|ZP_03584593.1| DNA topoisomerase IV, A subunit [Burkholderia multivorans CGD1] gi|221168975|gb|EEE01443.1| DNA topoisomerase IV, A subunit [Burkholderia multivorans CGD1] Length = 773 Score = 511 bits (1316), Expect = e-142, Method: Compositional matrix adjust. Identities = 284/699 (40%), Positives = 422/699 (60%), Gaps = 32/699 (4%) Query: 19 AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78 A++L E+ YL+YA+S +K RA+PD+ DG KPV RRI++AM+EMGL A KSAR+ Sbjct: 19 ALTLGNYAEQAYLSYAVSVVKSRALPDVCDGQKPVQRRILYAMNEMGLGPDAKPVKSARV 78 Query: 79 VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138 VG+V+GK HPHGDQS YD+LVRLAQ F RYPLI GQGNFG+ DGD AAA RYTEAR+T Sbjct: 79 VGDVLGKYHPHGDQSAYDALVRLAQDFSLRYPLIDGQGNFGSRDGDGAAAMRYTEARLTP 138 Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198 +++L+L +D+ VDF Y+ EP PS+ P +L NG SGIAVG+AT IPSHN++E Sbjct: 139 ISKLLLDEIDQGTVDFMPNYDGSFEEPKTLPSRMPFVLLNGASGIAVGLATEIPSHNLRE 198 Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258 + AA+ALI NP+++ E+L+ I GPDFP GG I+ S I +Y GRG +VRARW + Sbjct: 199 VAAAAVALIRNPKLTHEELMTLIPGPDFPGGGQIISSDAEIASAYETGRGSLKVRARWKI 258 Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAK------------------RIPLLED 300 E++ RG W +VVTE+P +++E+I EL K + LL+ Sbjct: 259 EDLARGQWQLVVTELPPNTSCQKVLEEIEELTNPKLKLGKKTLTPEQLNTKKAMLDLLDA 318 Query: 301 IRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLD 358 +RDES ++ VR+V PK+R++D + S+ + +E+ LN+ ++ P L Sbjct: 319 VRDESGKEAAVRLVFEPKSRTIDQTEFVNSLLAHTSLESNATLNLVMIGADGRPGQKGLL 378 Query: 359 GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV 418 IL EW+ R+ + RR R+ +D R+ IL+G +I +LN+DE+I IIR D+PK ++ Sbjct: 379 TILDEWVKFRQMTMTRRCRHRLGKVDDRIHILEGRMIVFLNLDEVIRIIRESDEPKAALM 438 Query: 419 SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE 478 S F LTE Q + IL +RLR L +LE+ +I+ EL++L EK K++ LL N+ A + Sbjct: 439 SAFGLTERQAEDILEIRLRQLARLEKIKIEKELESLRDEKAKLEELLA------NESAMK 492 Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV 538 +KEI + + G R T + + +AT +A + EP+TVV+S +GW+R+LK H + Sbjct: 493 RLMIKEIEADAKQYGDDRRTL--IQQEKRATF-EAKVVDEPVTVVVSQKGWVRALKGHGL 549 Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNH 598 D + FK GDSL A T DR++ + G+ Y++ L GRG G + LI+L Sbjct: 550 DPAGFSFKAGDSLYAAFQCRTPDRLIAWGSSGRVYSVDVSVLPGGRGDGVPVTSLIELES 609 Query: 599 NQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV--SSEEKMKLVVKV 656 ++ + + LL+ SS G FI + ++++ + GK+F+ + + + V Sbjct: 610 GSHLMHYYAASADQPLLLASSNGFGFIAKVGDMVSRVKAGKSFMTIDPGAVPLAPMPVLP 669 Query: 657 TGDHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKD 694 VA + +LL+F ID++ +S G+GV L + D Sbjct: 670 NATQVACLSSGGRLLVFGIDEMKALSGGGRGVTLMALDD 708 >gi|169632198|ref|YP_001705934.1| DNA topoisomerase IV subunit A [Acinetobacter baumannii SDF] gi|215484961|ref|YP_002327202.1| DNA topoisomerase IV, A subunit [Acinetobacter baumannii AB307-0294] gi|260556418|ref|ZP_05828637.1| DNA topoisomerase IV, A subunit [Acinetobacter baumannii ATCC 19606] gi|169150990|emb|CAO99616.1| DNA topoisomerase IV, subunit A [Acinetobacter baumannii] gi|213987958|gb|ACJ58257.1| DNA topoisomerase IV, A subunit [Acinetobacter baumannii AB307-0294] gi|260410473|gb|EEX03772.1| DNA topoisomerase IV, A subunit [Acinetobacter baumannii ATCC 19606] Length = 739 Score = 511 bits (1316), Expect = e-142, Method: Compositional matrix adjust. Identities = 278/732 (37%), Positives = 440/732 (60%), Gaps = 21/732 (2%) Query: 27 EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86 E+ YL YA+ I +RA+P + DG KPV RRI++AMSE+GL KKSAR VG+V+GK Sbjct: 19 EQAYLNYAMYVIMDRALPHISDGLKPVQRRIVYAMSELGLKSSGKPKKSARTVGDVLGKY 78 Query: 87 HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQVAELILQ 145 HPHGD + Y+++V +AQPF RYPLI GQGN+G+ D S AA RYTEA+++ +EL+L Sbjct: 79 HPHGDSACYEAMVLMAQPFSYRYPLIEGQGNWGSPDDPKSFAAMRYTEAKLSAYSELLLS 138 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 + + +++D ++ EP+ P++ PN+L NGT+GIAVGMAT IP HN++E+ + +A Sbjct: 139 ELGQGTSEWQDNFDGSLKEPITLPARVPNILLNGTTGIAVGMATDIPPHNLREVVKGTIA 198 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265 LI NP+ S EKL EYI PD PT I+ E +++ GRG +R+RA + +E+ Sbjct: 199 LIRNPQTSDEKLAEYIPAPDLPTKAEIITPPEELLKIQTTGRGSYRMRAVYTIEKNE--- 255 Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFPKNRSLDPD 323 IV+TE+PYQV S++I +IA+ + AK++PL+ D+RDES + R+V+ ++ +D + Sbjct: 256 --IVITELPYQVSGSKVITQIADQMQAKKLPLVVDVRDESDHENPTRLVIVLRSNRIDAE 313 Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383 +M +F +D+E+ + +N+N++ PQV + IL EW+ R++ + RR + + I Sbjct: 314 AVMSHLFATTDLESSYRVNLNMIGEDGRPQVKSIRRILLEWIEIRKKTVTRRLQYHLNRI 373 Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLE 443 ++R+ IL GLLIAYL+ID +I IIR ED+PKPV++ F++ E Q +AIL L+LR L KLE Sbjct: 374 EKRLHILAGLLIAYLDIDTVIRIIREEDQPKPVLMEHFNIDEIQAEAILELKLRHLAKLE 433 Query: 444 EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVS 503 E +I+ E D L A+ I L + + N I E++E + F RR+ V+ Sbjct: 434 EMEIRHEQDELSAKAAIIREQLENPESLKNLIISELKEDAKKFGDE-----RRSPI--VA 486 Query: 504 RADKATL-QQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDR 562 RA+ + +Q ++ E +TVV+S GW+R+ K VD L+++ GD T R Sbjct: 487 RAEAVQIKEQDLMPAETVTVVLSEAGWVRAAKGADVDAENLNYRAGDQYLSHAVGKTNQR 546 Query: 563 ILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGN 622 + L G++Y LP NL S RG G+ + + + ++ D +L+ SS G Sbjct: 547 VYFLDETGRSYALPISNLPSARGLGDPLSSKLSPASGVSFIQVYLDDDESELIAASSAGY 606 Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEK-MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEM 681 F + ++ N + GKTFL V + K + L+ H+AV+ +LLI + ++P + Sbjct: 607 GFKTQTKQLDTNAKAGKTFLTVPDKAKALPLISAQNMTHLAVLSSAGRLLILDLAELPNL 666 Query: 682 SRGKGVRL-QSYKDGGISDVICFKICEGLTWIDSAGRSYNRSE-NDLLGWLGKRGGVGSL 739 ++GKG +L Q I + + E + + AG+ + + + +DL ++GKR G L Sbjct: 667 NKGKGNKLIQLEGKEQILSMTTLNLDEIIQVV--AGQQHLKLKGDDLQKYMGKRASKGQL 724 Query: 740 VPKGFPRSGKFL 751 +P+G+ ++ K L Sbjct: 725 LPRGYQKANKLL 736 >gi|323525277|ref|YP_004227430.1| DNA topoisomerase IV subunit A [Burkholderia sp. CCGE1001] gi|323382279|gb|ADX54370.1| DNA topoisomerase IV, A subunit [Burkholderia sp. CCGE1001] Length = 774 Score = 511 bits (1316), Expect = e-142, Method: Compositional matrix adjust. Identities = 275/691 (39%), Positives = 419/691 (60%), Gaps = 32/691 (4%) Query: 27 EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86 E YL YA+S +K RA+PD+ DG KPV RRI++AM+E+GL A KSAR+VG+VIGK Sbjct: 28 EGAYLQYAVSVVKGRALPDVCDGQKPVQRRILYAMNELGLSDNAKPVKSARVVGDVIGKY 87 Query: 87 HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQG 146 HPHGDQS YD+LVRLAQ F RYPLI GQGNFG+ DGD AAA RYTEAR+T +++L+L Sbjct: 88 HPHGDQSAYDALVRLAQDFAMRYPLIDGQGNFGSRDGDGAAAMRYTEARLTPISKLLLDE 147 Query: 147 VDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALAL 206 +D+ VDF Y+ + EP P++ P LL NG SGIAVG+AT IPSHN++E+ A +A+ Sbjct: 148 IDQGTVDFMPNYDGVEQEPRQLPARLPFLLLNGASGIAVGLATEIPSHNLREVAAATVAM 207 Query: 207 IDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSW 266 I NP+I+ L++++ GPDFP GG I+ S I +Y GRG +VRARW +E++ RG W Sbjct: 208 IRNPKIAHADLMQHMPGPDFPGGGQIISSEAEIAAAYESGRGSLKVRARWKIEDLARGQW 267 Query: 267 CIVVTEIPYQVQKSRLIEKIAE-----LIIAKR-------------IPLLEDIRDESAED 308 +V+TE+P +++E+I E + + K+ + LL+ +RDES +D Sbjct: 268 QLVITELPPNTAAQKVLEEIEEQTNPKIKLGKKALTPEQLQAKQTMLSLLDAVRDESGKD 327 Query: 309 --VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366 VR+V PK+ +D + ++ + +E+ LN+ ++ P+ L IL EW+A Sbjct: 328 APVRLVFEPKSSRIDQTEFVNTLLAHTSLESNASLNLVMVGGDGRPRQKGLSEILHEWIA 387 Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426 R + RR+ R+ +D R+ IL+G +I YLNIDE+I IIR D+PK +++ F L++ Sbjct: 388 FRFATVTRRTRHRLTKVDDRIHILEGRMIVYLNIDEVIRIIRESDEPKVALMAAFGLSDR 447 Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486 Q D IL +RLR L +LE+ +I+ EL +L EK K++ LL S + A + +KEI Sbjct: 448 QADDILEIRLRQLARLEKIKIEKELADLRDEKAKLEELLAS------ESAMKRLLIKEIE 501 Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546 + + G R T + + +AT + +I+ EP+TVV+S +GW+R+LK H +D + FK Sbjct: 502 ADAKQYGDERRTLIQQEK--RATYEARVID-EPVTVVVSQKGWVRALKGHGLDTAGFTFK 558 Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606 GD L A T D ++ ++G+ Y++ +L GRG G + LI+L ++ + Sbjct: 559 AGDGLYAAFPCRTPDTLIAWGSNGRVYSVAVASLPGGRGDGVPVTSLIELESGSHLMHYY 618 Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD--HVAVV 664 + LL+ SS G FI + ++++ + GK+F+ + + + + D VA + Sbjct: 619 AAAADQALLLASSNGFGFIAKVGDMVSRVKAGKSFMTIDAGAAPLAPMPMLPDASQVACL 678 Query: 665 GENRKLLIFSIDQIPEMS-RGKGVRLQSYKD 694 +LL+F ID++ +S G+GV L + D Sbjct: 679 SSTGRLLVFGIDEMKTLSGGGRGVTLMALDD 709 >gi|262373914|ref|ZP_06067191.1| DNA topoisomerase IV, A subunit [Acinetobacter junii SH205] gi|262310925|gb|EEY92012.1| DNA topoisomerase IV, A subunit [Acinetobacter junii SH205] Length = 739 Score = 511 bits (1315), Expect = e-142, Method: Compositional matrix adjust. Identities = 275/731 (37%), Positives = 439/731 (60%), Gaps = 19/731 (2%) Query: 27 EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86 E+ YL YA+ I +RA+P + DG KPV RRI++AMSE+GL KKSAR VG+V+GK Sbjct: 19 EQAYLNYAMYVIMDRALPHISDGLKPVQRRIVYAMSELGLKSTGKPKKSARTVGDVLGKY 78 Query: 87 HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQVAELILQ 145 HPHGD + Y+++V +AQPF RYPLI GQGN+G+ D S AA RYTEA+++ +EL+L Sbjct: 79 HPHGDSACYEAMVLMAQPFSYRYPLIEGQGNWGSPDDPKSFAAMRYTEAKLSAYSELLLS 138 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 + + +++D ++ EP+ P++ PN+L NGT+GIAVGMAT IP HN++E+ + +A Sbjct: 139 ELGQGTSEWQDNFDGSMKEPITLPARIPNILLNGTTGIAVGMATDIPPHNLREVVKGTIA 198 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265 LI NPE + EKL EYI PD PT I+ E +++ GRG +R+RA + +++ Sbjct: 199 LIRNPETTDEKLAEYIPAPDLPTKAEIITPPEELLKIQTTGRGSYRMRAVYTIDKNE--- 255 Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFPKNRSLDPD 323 IV+TE+PYQV S++I +IA+ +IAK++PL+ D+RDES R+V+ ++ +D + Sbjct: 256 --IVITELPYQVSGSKVITQIADQMIAKKLPLVSDVRDESDHQNPTRLVIVLRSNRVDAE 313 Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383 +M +F +D+E+ + +N+N++ PQV + IL EW+ R++ + RR + + I Sbjct: 314 TVMSHLFATTDLESSYRVNLNMIGADGRPQVKSIRRILLEWIEIRKQTVTRRLQYHLNKI 373 Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLE 443 ++R+ IL GLLIAYL+ID +I IIR ED+PKPV++ F + + Q +AIL L+LR L KLE Sbjct: 374 EKRLHILAGLLIAYLDIDTVIRIIREEDQPKPVLMQHFGIDDIQAEAILELKLRHLAKLE 433 Query: 444 EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVS 503 E +I+ E + L A+ I L + + N I E++E + F RR+ V+ Sbjct: 434 EMEIRREQEELEAKAAIIREQLANPESLKNLIINELKEDAKKFGDD-----RRSPI--VT 486 Query: 504 RADKATL-QQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDR 562 RAD + +Q ++ E +TVV+S GW+R+ K VD + L+++ GD T R Sbjct: 487 RADAVQIKEQDLMPAETVTVVLSEAGWVRAAKGGDVDAANLNYRAGDQYLSHAVGKTNQR 546 Query: 563 ILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGN 622 + L G++Y LP +L S RG GE + + + F+ D +LL VSS G Sbjct: 547 VYFLDETGRSYALPISSLPSARGLGEPLSSKLAPASGVSFIQVFIEDDASELLAVSSNGY 606 Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEK-MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEM 681 F + +++ N + GK+FL V+ + + L+ HVA++ +LLI + ++P + Sbjct: 607 GFKTQAAQLDTNAKAGKSFLTVADKATALPLLPIQQATHVAILSSAGRLLIVDLTELPVL 666 Query: 682 SRGKGVRL-QSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740 ++GKG +L Q + I + + E + + + + +DL ++GKR G L+ Sbjct: 667 NKGKGNKLIQLDEKEQILSMTTLNLDE-IIQVAAGQQHLKLKGDDLQKYIGKRATKGQLL 725 Query: 741 PKGFPRSGKFL 751 P+G+ ++ + L Sbjct: 726 PRGYQKANRLL 736 >gi|16273429|ref|NP_439678.1| DNA topoisomerase IV subunit A [Haemophilus influenzae Rd KW20] gi|260580312|ref|ZP_05848141.1| DNA topoisomerase IV, A subunit [Haemophilus influenzae RdAW] gi|1172017|sp|P43702|PARC_HAEIN RecName: Full=DNA topoisomerase 4 subunit A; AltName: Full=Topoisomerase IV subunit A gi|1574370|gb|AAC23175.1| topoisomerase IV, subunit A (parC) [Haemophilus influenzae Rd KW20] gi|260092989|gb|EEW76923.1| DNA topoisomerase IV, A subunit [Haemophilus influenzae RdAW] Length = 747 Score = 511 bits (1315), Expect = e-142, Method: Compositional matrix adjust. Identities = 278/743 (37%), Positives = 438/743 (58%), Gaps = 26/743 (3%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 E ++ + LR E+ YL Y++ I +RA+P + DG KPV RRI++AMSE+GL+ A +KK Sbjct: 7 EGIEQMPLRTFTEKAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKYKK 66 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTE 133 SAR VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S AA RYTE Sbjct: 67 SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 126 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 +R+++++E++L + + VD++ ++ +EP P++ P++L NGT+GIAVGMAT IP Sbjct: 127 SRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATDIPP 186 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ EI +AA+ L+DNP+ ++ +LE + GPDFPT I+ + I + Y GRG ++R Sbjct: 187 HNINEIADAAVMLLDNPKAGLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRGSIKMR 246 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRI 311 A W E+ I+++ +P+Q S++I +IAE + AK++P+LEDIRDE+ + +RI Sbjct: 247 ATWKKED-----GEIIISALPHQSSPSKVIAQIAEQMTAKKLPMLEDIRDEADHENPIRI 301 Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371 VL P++ +D D LM +F +D+E + +NMN++ + P V L IL EWL RR Sbjct: 302 VLVPRSNRVDTDALMAHLFATTDLEKSYRVNMNMIGLDHKPAVKGLLEILNEWLDFRRTT 361 Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431 + RR +R+ + R+ IL+GL+IA+LNIDE+I IIR+ED PK +++RF+L++ Q DAI Sbjct: 362 VTRRLQYRLDKVLSRLHILEGLMIAFLNIDEVIEIIRHEDDPKAELMARFNLSDEQADAI 421 Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491 LNLRLR L KLEE Q+K+E D L E+ ++++L S ++ I EI+E + ++ Sbjct: 422 LNLRLRHLAKLEENQLKAEQDELEKERLNLEAILGSERRLNTLIKKEIQEDAKKYANP-- 479 Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551 R + E A K + M EP+TV++S GW+R K H +D +L +K GDS Sbjct: 480 ---RMSQLVEREEA-KMISESDMTPAEPVTVILSEMGWVRCAKGHDIDPKSLSYKAGDSY 535 Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611 + ++ + + G++Y L +L S R GE + ++L I + Sbjct: 536 LAHACGKSNQAVVFIDSTGRSYALDPLSLPSARSQGEPLTGKLNLPTGATIEYVVMASEQ 595 Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVAVVGENR 668 +LL+ S G FI + ++IA + GK + + K+ K ++ T VA+ R Sbjct: 596 QELLMASDAGYGFICKFEDLIARNKAGKALISLPENAKVLKPKTLINSTALVVAITSAGR 655 Query: 669 KLLIFSIDQIPEMSRGKGVRLQSYKDGGISD-------VICFKICEGLTWIDSAGRSYNR 721 +LIF +P +S+GKG ++ + D ++ L + S R Sbjct: 656 -MLIFPAQDLPVLSKGKGNKMITIPAANAKDRSELLTKLLLISDQASLEFY-SGKRKIVL 713 Query: 722 SENDLLGWLGKRGGVGSLVPKGF 744 DL + +RG GS +P+G Sbjct: 714 KPEDLQKFRAERGRKGSTLPRGL 736 >gi|207113492|gb|ACI23464.1| topoisomerase IV [Edwardsiella tarda] Length = 701 Score = 511 bits (1315), Expect = e-142, Method: Compositional matrix adjust. Identities = 263/662 (39%), Positives = 413/662 (62%), Gaps = 16/662 (2%) Query: 35 LSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSV 94 + I +RA+P + DG KPV RRI++AMSE+GL A FKKSAR VG+V+GK HPHG + Sbjct: 1 MYVIMDRALPFIGDGLKPVQRRIVYAMSELGLSASAKFKKSARTVGDVLGKYHPHGVSAC 60 Query: 95 YDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQVAELILQGVDEDAVD 153 Y+++V +AQPF RYPL+ GQGN+G D S AA RYTE+R+++ AE++L + + VD Sbjct: 61 YEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSRYAEILLSELGQGTVD 120 Query: 154 FRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEIS 213 + ++ EP P++ PN+L NGT+GIAVGMAT IP HN +E+ A +AL+DNP+ S Sbjct: 121 YVANFDGTLQEPKFLPARLPNILLNGTTGIAVGMATDIPPHNAREVAAALVALLDNPQSS 180 Query: 214 IEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEI 273 ++ LL +I GPDFPT I+ R+ I + YR GRG R+RA W EE IV++ + Sbjct: 181 LDDLLTHIQGPDFPTEAEIITPRDEIRKIYRTGRGSVRMRAVWRKEESE-----IVISAL 235 Query: 274 PYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFPKNRSLDPDLLMESIFM 331 P+Q ++++E+IA + A+ +++D+RDES + R+V+ P++ +D D LM +F Sbjct: 236 PHQTSGAKVLEQIASQMRARSCSMVDDLRDESDHENPTRLVIVPRSNRVDLDQLMNHLFA 295 Query: 332 LSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILK 391 +D+E + +NMN++ + R P V L IL EWL++RRE + RR ++R++ + +R+ IL+ Sbjct: 296 TTDLEKSYRINMNMIGLDRRPAVKDLREILSEWLSYRRETVRRRLNYRLEKVLKRLHILE 355 Query: 392 GLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451 GLL A+LNIDE+I IIR+ED+PKPV+V+RF L++ Q +AIL L+LR L +LEE +I+ E Sbjct: 356 GLLCAFLNIDEVIHIIRSEDEPKPVLVARFGLSDTQAEAILELKLRHLARLEEVKIRGEQ 415 Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511 D L E++++ +LL S ++ I EI E + + RR+ E S A +A + Sbjct: 416 DALAQERDRLQTLLASERKLGTLIKEEIMADAETYGDA-----RRSPLQERSEA-RAMSE 469 Query: 512 QAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGK 571 + EP+T+V+S GW+RS K H +D S L++K GD+ + A + ++ + + G+ Sbjct: 470 HDFVPSEPVTIVLSEGGWVRSAKGHDIDPSGLNYKAGDAFRAAARGKSNQPVVFIDSSGR 529 Query: 572 AYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEI 631 +Y L L S RG GE + + I + KLL+ S G F+ S++ Sbjct: 530 SYALDPLTLPSARGQGEPLTGKLTPPPGATIEHVLMAADNQKLLMASDAGYGFVCTFSDL 589 Query: 632 IANTRKGKTFLKVSSEEKMKLVVKVTGDH--VAVVGENRKLLIFSIDQIPEMSRGKGVRL 689 +A R GK L + K+ +++ GD + + E ++L+F + +P++S+GKG ++ Sbjct: 590 VACNRAGKAMLTLPENAKVLTPLEINGDDDMLLAITEAGRMLMFPVHDLPQLSKGKGNKI 649 Query: 690 QS 691 S Sbjct: 650 VS 651 >gi|312958634|ref|ZP_07773154.1| gram negative topoisomerase IV, subunit A [Pseudomonas fluorescens WH6] gi|311287177|gb|EFQ65738.1| gram negative topoisomerase IV, subunit A [Pseudomonas fluorescens WH6] Length = 754 Score = 511 bits (1315), Expect = e-142, Method: Compositional matrix adjust. Identities = 278/753 (36%), Positives = 450/753 (59%), Gaps = 29/753 (3%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 + V+ SL E YL Y++ I +RA+P + DG KPV RRII+AMSE+GLD + KK Sbjct: 10 DGVERRSLADFTENAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELGLDADSKHKK 69 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTE 133 SAR VG+V+GK HPHGD + Y+++V +AQPF RY L+ GQGN+G D S AA RYTE Sbjct: 70 SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPDDPKSFAAMRYTE 129 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 AR+++ +E++L + + D+ ++ EP+V P++ PN+L NGT+GIAVGMAT +P Sbjct: 130 ARLSRYSEVLLSELGQGTADWGPNFDGTLDEPLVLPARLPNILLNGTTGIAVGMATDVPP 189 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN++E+ A + L+D P+ ++E+L E+I GPD+PT I+ R +++ Y G+G R+R Sbjct: 190 HNLREVATACVRLLDEPKATVEQLCEHIQGPDYPTEAEIITPRADLLKMYETGKGSVRMR 249 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAK--RIPLLEDIRDESAED--V 309 A + VE+ I+VT +P+QV ++++E+IA L+ AK ++P + D+RDES + Sbjct: 250 AVYHVED-----GDIIVTALPHQVSGAKVLEQIAALMQAKPSKLPQVADLRDESDHENPC 304 Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369 RIV+ P N +D ++LM+ +F +D+E+ + +N+N++ + PQ+ L +L EWLA R Sbjct: 305 RIVIIPTNSRVDHEVLMQHLFASTDLESSYRVNINIIGLDGKPQLKNLRNLLVEWLAFRV 364 Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429 + + RR FR+ ++RR+ +L GLLIAYLN+DE+I IIR + PK +++RF L+E Q D Sbjct: 365 QTVRRRLQFRLDKVERRLHLLDGLLIAYLNLDEVIHIIRTAEHPKAELIARFELSEIQAD 424 Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489 IL+ RLR L +LEE +++ E D LL E+ K+ +LL S + + E+ + E + Sbjct: 425 YILDTRLRQLARLEEMKLRDEQDALLKEQAKLQALLGSEAKLKKLVRSELIKDAETYGDD 484 Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549 RR+ + + A KA + ++ E ITVV+S +GW+RS K H +D + L +K GD Sbjct: 485 -----RRSPIVQRAEA-KALTETELLPNEKITVVLSEKGWVRSAKGHDIDATGLSYKAGD 538 Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609 K A + + + + G++Y++PA L S RG GE + + + + D Sbjct: 539 GFKTAAAGRSNQFAVFIDSTGRSYSVPAHTLPSARGQGEPLTGRLTPPPGANFECVLLPD 598 Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT---GDHVAVVGE 666 ++ S G F+V+ ++ A + GK L + + K+ L V + +A V Sbjct: 599 DDSLYVIASDAGYGFVVKGEDLQAKNKAGKALLSLPNNAKVILPRPVDDRESNWLASVTT 658 Query: 667 NRKLLIFSIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTWIDSAG-RS 718 +LL+F I +P++ +GKG ++ + ++ ++D+ I EG T + AG R+ Sbjct: 659 EGRLLVFKISDLPQLGKGKGNKIIGIPGERVASREEYVTDIAV--IPEGATLVLQAGKRT 716 Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751 + +DL + G+RG G+ +P+GF R L Sbjct: 717 LSLRPDDLEHYKGERGRRGNKLPRGFQRVDALL 749 >gi|4176379|dbj|BAA37152.1| topoisomerase IV subunit [Pseudomonas aeruginosa] Length = 754 Score = 511 bits (1315), Expect = e-142, Method: Compositional matrix adjust. Identities = 280/761 (36%), Positives = 450/761 (59%), Gaps = 29/761 (3%) Query: 6 ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65 +S S L E V+ SL E+ YL Y++ I +RA+P + DG KPV RRI++AMSE+G Sbjct: 1 MSESLDLSLEGVERRSLAEFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIVYAMSELG 60 Query: 66 LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124 LD + KKSAR VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D Sbjct: 61 LDADSKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPK 120 Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184 S AA RYTEAR+++ +E++L + + VD+ ++ EP V P++ PNLL NGT+GIA Sbjct: 121 SFAAMRYTEARLSRYSEVLLSELGQGTVDWVPNFDGTLDEPAVLPARLPNLLLNGTTGIA 180 Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244 VGMAT +P HN++E+ A + L+D P ++ +L E++ GPDFPT I+ R + + Y Sbjct: 181 VGMATDVPPHNLREVASACVRLLDQPGATVAELCEHVPGPDFPTEAEIITPRADLQKVYE 240 Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304 GRG R+RA + E+ IV+ +P+QV S+++E+IA + AK++P++ D+RDE Sbjct: 241 TGRGSVRMRAVYRFED-----GDIVIHALPHQVSGSKVLEQIAGQMQAKKLPMVADLRDE 295 Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362 S + RIV+ P++ +D + LM +F +D+ET + +N+N++ + P V L +L Sbjct: 296 SDHENPTRIVIIPRSNRVDVEELMTHLFATTDLETSYRVNLNIIGLDGKPAVKDLRQLLS 355 Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422 EWL R + RR FR+ ++RR+ +L GLLIA+LN+DE+I IIR ED+PK V++ RF Sbjct: 356 EWLQFRIGTVRRRLQFRLDKVERRLHLLDGLLIAFLNLDEVIHIIRTEDQPKAVLMERFE 415 Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482 L+E Q D IL+ RLR L +LEE +I+ E + LL E++++ +LL S + + E+ + Sbjct: 416 LSEVQADYILDTRLRQLARLEEMKIRGEQEELLKEQKRLQTLLGSEAKLKKLVREELIKD 475 Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQA-MIEKEPITVVISNRGWIRSLKSHSVDLS 541 E + RR+ V+RA+ L + ++ EP+TVV+S +GW+R K H +D + Sbjct: 476 AETYGDD-----RRSPI--VARAEARALSETELMPTEPVTVVLSEKGWVRCAKGHDIDAA 528 Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD 601 L +K GD K A + + + + G++Y+LPA +L S RG GE + + Sbjct: 529 GLSYKAGDGFKAAAPGRSNQYAVFIDSTGRSYSLPAHSLPSARGQGEPLSGRLTPPPGAS 588 Query: 602 IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTG 658 + D ++ S G F+V+ ++ A + GK L + + + + V V Sbjct: 589 FECVLLPDDDALFVIASDAGYGFVVKGEDLQAKNKAGKALLSLPNGSAVVAPRPVRDVEQ 648 Query: 659 DHVAVVGENRKLLIFSIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTW 711 D +A V +LL+F + +P++ +GKG ++ + ++ ++D+ + G T Sbjct: 649 DWLAAVTTEGRLLLFKVSDLPQLGKGKGNKIIGIPGERVASREEYLTDLAV--LPAGATL 706 Query: 712 IDSAG-RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751 + AG R+ + +DL + G+RG G+ +P+GF R L Sbjct: 707 VLQAGKRTLSLKGDDLEHYKGERGRRGNKLPRGFQRVDSLL 747 >gi|70734052|ref|YP_257692.1| DNA topoisomerase IV subunit A [Pseudomonas fluorescens Pf-5] gi|68348351|gb|AAY95957.1| DNA topoisomerase IV, A subunit [Pseudomonas fluorescens Pf-5] Length = 752 Score = 511 bits (1315), Expect = e-142, Method: Compositional matrix adjust. Identities = 275/761 (36%), Positives = 455/761 (59%), Gaps = 29/761 (3%) Query: 6 ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65 +S+S L + V+ SL E YL Y++ I +RA+P + DG KPV RRI++AMSE+G Sbjct: 1 MSDSLDLSLDGVERRSLADFTENAYLNYSMYVIMDRALPHIGDGLKPVQRRIVYAMSELG 60 Query: 66 LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124 LD + KKSAR VG+V+GK HPHGD + Y+++V +AQPF RY L+ GQGN+G D Sbjct: 61 LDADSKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPDDPK 120 Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184 S AA RYTEAR+++ +E++L + + D+ ++ EP+V P++ PN+L NGT+GIA Sbjct: 121 SFAAMRYTEARLSRYSEVLLSELGQGTADWGPNFDGTLQEPLVLPARLPNILLNGTTGIA 180 Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244 VGMAT +P HN++E+ A + L+D P+ ++E+L E+I GPD+PT I+ R +++ Y Sbjct: 181 VGMATDVPPHNLREVASACVRLLDEPKATVEQLCEHIQGPDYPTEAEIITPRADLLKIYE 240 Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304 GRG R+RA + VE+ I+VT +P+QV ++++E+IA + AK++P++ D+RDE Sbjct: 241 TGRGSVRMRAVYRVED-----GDIIVTALPHQVSGAKVLEQIAGQMQAKKLPMVADLRDE 295 Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362 S + RIV+ P++ +D D LM+ +F +++E+ + +N+N++ + PQ+ L +L Sbjct: 296 SDHENPCRIVIIPRSNRVDADELMQHLFATTELESTYRVNINIIGLDGKPQLKNLRALLV 355 Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422 EWL R + RR FR+ ++RR+ +L GLLIAYLN+DE+I IIR E+ P+ ++ RF+ Sbjct: 356 EWLEFRVTTVRRRLQFRLDKVERRLHLLDGLLIAYLNLDEVIHIIRTEEHPRAKLIERFA 415 Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482 L+E Q D IL+ RLR L +LEE ++++E D LL E+ K+ +LLNS + + E+ + Sbjct: 416 LSEIQADYILDTRLRQLARLEEMKLRAEQDELLKEQAKLQALLNSEAKLKKLVRTELLQD 475 Query: 483 KEIFSKSTDLGRRRTTFCEVSRAD-KATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS 541 E + RR+ V+RA+ KA + ++ EP+T+V+S +GW+R K H +D + Sbjct: 476 AETYGDD-----RRSPI--VARAEAKALSENELMPTEPVTIVLSEKGWVRCAKGHDIDAT 528 Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD 601 L +K GD K A + + + + G++Y++ A L S RG GE + + Sbjct: 529 GLSYKAGDGYKTAAPGRSNQFAVFIDSTGRSYSVAAHTLPSARGQGEPLTGRLTPPPGAT 588 Query: 602 IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTG 658 + D ++ S G F+V+ ++ A + GK L + + K+ + V Sbjct: 589 FECVLLPDDDALYVIASDAGYGFVVKGEDLQAKNKAGKALLSLPNNAKVLAPRPVADREQ 648 Query: 659 DHVAVVGENRKLLIFSIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTW 711 + +A V +LL+F I +P++ +GKG ++ + ++ ++D+ +G T Sbjct: 649 NWLASVTTEGRLLVFKISDLPQLGKGKGNKIIGIPGERVASREEYVTDIAVLP--DGATL 706 Query: 712 IDSAG-RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751 + AG R+ + +DL + G+RG G+ +P+GF R L Sbjct: 707 VLQAGKRTLSLKADDLEHYKGERGRRGNKLPRGFQRVDALL 747 >gi|315127625|ref|YP_004069628.1| DNA topoisomerase IV subunit A [Pseudoalteromonas sp. SM9913] gi|315016139|gb|ADT69477.1| DNA topoisomerase IV subunit A [Pseudoalteromonas sp. SM9913] Length = 765 Score = 511 bits (1315), Expect = e-142, Method: Compositional matrix adjust. Identities = 272/753 (36%), Positives = 448/753 (59%), Gaps = 23/753 (3%) Query: 6 ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65 +S+++TL+ + ++ ++ E+ YL Y++ I +RA+P + DG KPV RRII+AMSE+G Sbjct: 1 MSDTDTLLMQGIEQQTMGRFTEDAYLNYSMYVIMDRALPHVGDGLKPVQRRIIYAMSELG 60 Query: 66 LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124 L A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D Sbjct: 61 LSANAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAADDPK 120 Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184 S AA RYTEAR+++ +E++L+ + + VD+ ++ EP+V PS+ P++L NG +GIA Sbjct: 121 SFAAMRYTEARLSKFSEVLLKELGQGTVDWTPNFDGTMDEPLVLPSRLPHILLNGVTGIA 180 Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244 VGMAT IP HNV+E+ A L+D P+ +E+LL+ + PD+PT I+ + I + Y+ Sbjct: 181 VGMATDIPPHNVREVASACCLLLDKPKTELEELLDLVHAPDYPTDAEIITPKADIHKIYK 240 Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304 GRG ++RA +C EE G IV+T +P+Q ++++E+IA + AK++P++ D+RDE Sbjct: 241 TGRGSIKMRAVYC-EEQGD----IVITALPHQCSGAKVLEQIAAQMNAKKLPMVADLRDE 295 Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362 S + RIV+ P++ + + LM +F +D+E + +N+N+L + PQV L IL Sbjct: 296 SDHENPTRIVIVPRSNRIKAEPLMAHLFATTDLEKNYRVNLNMLGLDGRPQVKDLRSILT 355 Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422 EWL RRE + RR +R+ + R+ IL+GLL A+LNIDE+I IIR+EDKPKP+++ RF Sbjct: 356 EWLTFRRETVRRRLQYRLDKVLARLHILEGLLAAFLNIDEVIEIIRSEDKPKPLLMERFE 415 Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482 LT+ Q +AIL L+LR L KLEE++I+ E D L E++K++ L S ++ + EI+E Sbjct: 416 LTDIQAEAILELKLRHLAKLEEFKIRGEQDELAKERDKLEQTLGSDRRMSTLLKKEIQEA 475 Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542 E++ RR+ E A KA ++ +I E +TVV+S++GW R K H +D+ Sbjct: 476 AEMYGDD-----RRSPVIERVEA-KALSEKDLIPSESVTVVLSDKGWARVGKGHDLDVEG 529 Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602 L+++ GD + + + + L + G+A+ A +L S R GE + +L Sbjct: 530 LNYRAGDGYRASARGKSNQPAVFLDSAGRAFATDAHSLPSARSQGEPMTGRFNLTSGASF 589 Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK---VTGD 659 + + LL+ S G FI + ++++ + GK + V + ++ V D Sbjct: 590 EHVVMGEDAQVLLMASDAGYGFITDFKDLVSKNKNGKALVSVPKGGVLLSPIRVNDVASD 649 Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISD-----VICFKICEGLTWIDS 714 + + ++L+F + +P++ +GKG ++ S + + + +G + Sbjct: 650 YCMAISNEGRMLLFPLRDLPKLGKGKGNKIISIPGAKVQAREEFVKVLAVVPQGSSVTLH 709 Query: 715 AG-RSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746 AG R +DL + G+RG G+ +P+G R Sbjct: 710 AGKRKLTLKPSDLEHYHGERGRRGNKLPRGLQR 742 >gi|152978651|ref|YP_001344280.1| DNA topoisomerase IV subunit A [Actinobacillus succinogenes 130Z] gi|150840374|gb|ABR74345.1| DNA topoisomerase IV, A subunit [Actinobacillus succinogenes 130Z] Length = 750 Score = 510 bits (1314), Expect = e-142, Method: Compositional matrix adjust. Identities = 275/742 (37%), Positives = 443/742 (59%), Gaps = 24/742 (3%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 E ++ + LR E YL Y++ I +RA+P + DG KPV RRII+AMSE+GL+ A +KK Sbjct: 7 EGIEQMPLRTFTESAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAMSELGLNAAAKYKK 66 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTE 133 SAR VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S AA RYTE Sbjct: 67 SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 126 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 +R+ +++E++L + + VD++ ++ +EP P++ P++L NGT+GIAVGMAT IP Sbjct: 127 SRLAKISEMLLSELGQGTVDYQPNFDGTIAEPQYLPARLPHILLNGTTGIAVGMATDIPP 186 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ EI +AA+ L+DNP +++ LL + GPDFPT I+ + I + Y GRG ++R Sbjct: 187 HNLNEIADAAVMLLDNPHTTLDDLLTVVQGPDFPTEAEIITPKSDIRKLYEQGRGSVKMR 246 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRI 311 A W E+ IV+T +P+Q S++ ++IA+ + AK++P++EDIRDE+ ++ VR+ Sbjct: 247 AVWKKED-----GEIVITAVPHQSSPSKIQQQIADQMNAKKLPMVEDIRDEADQENPVRL 301 Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371 V+ P++ +D D LM +F +D+E + +NMN++ + P V L IL EWL RR Sbjct: 302 VIVPRSNRVDVDALMNHLFATTDLERSYRVNMNMIGLDHKPAVKNLVQILTEWLQFRRAT 361 Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431 + RR R+ + R+ IL GLLIA+LNIDE+I IIR+ED+PK V+++RF L++ Q +AI Sbjct: 362 VTRRLRHRLDKVLSRLHILDGLLIAFLNIDEVIDIIRHEDEPKTVLMARFKLSDEQAEAI 421 Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491 LNLRLR L KLEE ++K+E L E++ ++ +L+S ++ I EI++ + ++ + Sbjct: 422 LNLRLRHLAKLEETELKAEKARLEEERQHLEQILSSERRLNTLIKKEIQQDAKTYAST-- 479 Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551 RR+ E A KA + M+ EP+TV++S GW+R K H +D+ L++K GD Sbjct: 480 ---RRSPLVEREEA-KAISETEMMPAEPVTVILSEMGWVRCAKGHDIDVQNLNYKAGDKY 535 Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611 + + + + + G++Y + +L S R GE + ++L + + + Sbjct: 536 LAHAYGKSNQPAVFIDSSGRSYAVDPLSLPSARSQGEPLTGKLNLPAGASMEQVLIENEN 595 Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVAVVGENR 668 LL+ S G FI + ++IA + GK L + K+ K++ T +A+ R Sbjct: 596 QPLLMASDAGYGFICQFEDLIARNKAGKAVLTLPENAKVLPPKIIKNSTALLLALTHAGR 655 Query: 669 KLLIFSIDQIPEMSRGKGVRLQSYK--DGGISDVICFK---ICEGLTWIDSAG-RSYNRS 722 +L+F + ++P +S+GKG ++ D + K I E + + +G R Sbjct: 656 -MLMFPVQELPSLSKGKGNKIIGIPAADAKVRSDFVVKLLLISENASLVFHSGKRKITLK 714 Query: 723 ENDLLGWLGKRGGVGSLVPKGF 744 DL + +RG GS +P+G Sbjct: 715 PEDLQKFRAERGRRGSKLPRGL 736 >gi|145632920|ref|ZP_01788653.1| DNA topoisomerase IV subunit A [Haemophilus influenzae 3655] gi|144986576|gb|EDJ93142.1| DNA topoisomerase IV subunit A [Haemophilus influenzae 3655] Length = 747 Score = 510 bits (1314), Expect = e-142, Method: Compositional matrix adjust. Identities = 278/743 (37%), Positives = 440/743 (59%), Gaps = 26/743 (3%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 E ++ + LR E+ YL Y++ I +RA+P + DG KPV RRI++AMSE+GL+ A +KK Sbjct: 7 EGIEQMPLRTFTEKAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKYKK 66 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTE 133 SAR VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S AA RYTE Sbjct: 67 SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 126 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 +R+++++E++L + + VD++ ++ +EP P++ P++L NGT+GIAVGMAT IP Sbjct: 127 SRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATDIPP 186 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ EI +AA+ L+DNP+ ++ +LE + GPDFPT I+ + I + Y GRG ++R Sbjct: 187 HNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRGSIKMR 246 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRI 311 A W E+ I+++ +P+Q S++I +IAE + AK++P+LEDIRDE+ + +RI Sbjct: 247 AIWKKED-----GEIIISALPHQSSPSKVIAQIAEQMTAKKLPMLEDIRDEADHENPIRI 301 Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371 VL P++ +D D LM +F +D+E + +NMN++ + P V L IL EWL RR Sbjct: 302 VLVPRSNRVDTDALMAHLFATTDLEKSYRVNMNMIGLDHKPAVKGLLEILNEWLDFRRTT 361 Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431 + RR +R+ + R+ IL+GL+IA+LNIDE+I IIR+ED PK +++RF+L++ Q DAI Sbjct: 362 VTRRLQYRLDKVLSRLHILEGLMIAFLNIDEVIEIIRHEDDPKAELMARFNLSDEQADAI 421 Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491 LNLRLR L KLEE Q+K+E D L E+ ++++L S ++ I EI+E + ++ Sbjct: 422 LNLRLRHLAKLEENQLKAEQDELEKERLNLEAILGSERRLNTLIKKEIQEDAKKYASP-- 479 Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551 R + E A K + M EP+TV++S GW+R K H +D +L +K GDS Sbjct: 480 ---RMSQLVEREEA-KMISENDMTPAEPVTVILSEMGWVRCAKGHDIDPKSLSYKAGDSY 535 Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611 + ++ + + G++Y L +L S R GE + ++L I + Sbjct: 536 LAHACGKSNQAVVFIDSTGRSYALDPLSLPSARSQGEPLTGKLNLPTGATIEYVVMASEQ 595 Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVAVVGENR 668 +LL+ S G FI + ++IA + GK + + K+ K ++ T VA+ R Sbjct: 596 QELLMASDAGYGFICKFEDLIARNKTGKALISLPENAKVLKPKTLINSTALVVAITSAGR 655 Query: 669 KLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSE----- 723 +LIF +P +S+GKG ++ + D + + L D A ++ + Sbjct: 656 -MLIFPAQDLPVLSKGKGNKMITIPAANAKDRSEL-LTKLLLISDQASLEFHSGKRKIVL 713 Query: 724 --NDLLGWLGKRGGVGSLVPKGF 744 DL + +RG GS +P+G Sbjct: 714 KPEDLQKFRAERGRKGSTLPRGL 736 >gi|319776383|ref|YP_004138871.1| DNA topoisomerase IV subunit A [Haemophilus influenzae F3047] gi|317450974|emb|CBY87203.1| DNA topoisomerase IV, subunit A [Haemophilus influenzae F3047] Length = 747 Score = 510 bits (1314), Expect = e-142, Method: Compositional matrix adjust. Identities = 278/743 (37%), Positives = 438/743 (58%), Gaps = 26/743 (3%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 E ++ + LR E+ YL Y++ I +RA+P + DG KPV RRI++AMSE+GL+ A +KK Sbjct: 7 EGIEQMPLRTFTEKAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKYKK 66 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTE 133 SAR VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S AA RYTE Sbjct: 67 SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 126 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 +R+++++E++L + + VD++ ++ +EP P++ P++L NGT+GIAVGMAT IP Sbjct: 127 SRLSKISEILLSELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATDIPP 186 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ EI +AA+ L+DNP+ ++ +LE + GPDFPT I+ + I + Y GRG ++R Sbjct: 187 HNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRGSIKMR 246 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRI 311 A W E+ I+++ +P+Q S++I +IAE + AK++P+LEDIRDE+ + +RI Sbjct: 247 ATWKKED-----GEIIISALPHQSSPSKVIAQIAEQMTAKKLPMLEDIRDEADHENPIRI 301 Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371 VL P++ +D D LM +F +D+E + +NMN++ + P V L IL EWL RR Sbjct: 302 VLVPRSNRVDTDALMAHLFATTDLEKSYRVNMNMIGLDHKPAVKGLLEILNEWLDFRRAT 361 Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431 + RR +R+ + R+ IL+GL+IA+LNIDE+I IIR+ED PK +++RF+L++ Q DAI Sbjct: 362 VTRRLQYRLDKVLSRLHILEGLMIAFLNIDEVIEIIRHEDDPKAELMARFNLSDEQADAI 421 Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491 LNLRLR L KLEE Q+K+E D L E+ ++++L S ++ I EI+E + ++ Sbjct: 422 LNLRLRHLAKLEENQLKAEQDELEKERLNLEAILGSERRLNTLIKKEIQEDAKKYASP-- 479 Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551 R + E A K + M EP+TV++S GW+R K H +D +L +K GDS Sbjct: 480 ---RMSQLVEREEA-KMISESDMTPAEPVTVILSEMGWVRCAKGHDIDPKSLSYKAGDSY 535 Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611 + ++ + + G++Y L +L S R GE + ++L I + Sbjct: 536 LAHACGKSNQAVVFIDSTGRSYALDPLSLPSARSQGEPLTGKLNLPTGATIEYVVMASEQ 595 Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVAVVGENR 668 +LL+ S G FI + ++IA + GK + + K+ K ++ T VA+ R Sbjct: 596 QELLMASDAGYGFICKFEDLIARNKAGKALISLPENAKVLKPKTLINSTALVVAITSAGR 655 Query: 669 KLLIFSIDQIPEMSRGKGVRLQSYKDGGISD-------VICFKICEGLTWIDSAGRSYNR 721 +LIF +P +S+GKG ++ + D ++ L + S R Sbjct: 656 -MLIFPAQDLPVLSKGKGNKMITIPAANAKDRSELLTKLLLISDQASLEFY-SGKRKIVL 713 Query: 722 SENDLLGWLGKRGGVGSLVPKGF 744 DL + +RG GS +P+G Sbjct: 714 KPEDLQKFRAERGRKGSTLPRGL 736 >gi|54307669|ref|YP_128689.1| DNA topoisomerase IV subunit A [Photobacterium profundum SS9] gi|46912092|emb|CAG18887.1| putative DNA topoisomerase IV [Photobacterium profundum SS9] Length = 756 Score = 510 bits (1314), Expect = e-142, Method: Compositional matrix adjust. Identities = 275/743 (37%), Positives = 446/743 (60%), Gaps = 25/743 (3%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 + V+ + LR E+ YL Y++ I +RA+P + DG KPV RRII+AMSE+GL+ A +KK Sbjct: 7 DGVEQLPLRKFTEDAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAMSELGLNATAKYKK 66 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTE 133 SAR VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S AA RYTE Sbjct: 67 SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 126 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 +R+++ +E++L + + D+ ++ +EP + P++ P++L NG +GIAVGMAT IP Sbjct: 127 SRLSRFSEVLLGELGQGTADWVPNFDGTMNEPKMLPARLPHILLNGITGIAVGMATDIPP 186 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN +E+ AA+ L+DNP +++L+ ++ GPD+PT I+ + + Y GRG R+R Sbjct: 187 HNAREVANAAVHLLDNPTADLDELMRFVKGPDYPTEAEIITPTHDLKKVYATGRGSIRMR 246 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRI 311 A W E + IV+T +P+QV ++L+E+IA + AK++P++ED+RDES + RI Sbjct: 247 AIWHKE-----NGDIVITALPHQVSGAKLLEQIANQMRAKKLPMVEDLRDESDHENPTRI 301 Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371 V+ P++ +D + LM +F +D+E F +N+N+L + P+V L I+ EWL RR Sbjct: 302 VIVPRSNRIDSEQLMNHLFASTDLEKSFRVNLNMLGLDGRPRVKGLLEIITEWLVFRRST 361 Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431 + RR +R+ + R+ IL+GLL AYLN+DE+I IIRNE+ PK ++SRF L+ Q DAI Sbjct: 362 VRRRLQYRLDKVVARLHILEGLLAAYLNLDEVIEIIRNEENPKAELMSRFDLSVIQADAI 421 Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491 L ++LR L KLEE +I+SE D L E++ +D LL S ++ I EI+ E + Sbjct: 422 LEIKLRQLAKLEEIKIRSEQDELAKERDYLDKLLGSERRLSTLIKKEIQADAEKYGDD-- 479 Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551 RR+ E + A KA ++ +I E ITVV+S +GWIR K + VD ++L +K GD+ Sbjct: 480 ---RRSPLVERAEA-KALTERDLIPSEAITVVLSEKGWIRHAKGYDVDPTSLSYKSGDNY 535 Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611 + +L+ +DG++Y L + +L S R GE + ++L ++ + D Sbjct: 536 LAHARGKSNLPAILIGSDGRSYALESHSLPSARSQGEPVTGRLNLTPGTNLRQVLMADDE 595 Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVAVVGENR 668 L+ S G FI + +++++ + GK L V + K+ + + + D + V+ Sbjct: 596 QMWLMGSDAGYGFICKSTDMVSKNKSGKALLTVPEKAKVMAPQPISNLDTDEILVITNEG 655 Query: 669 KLLIFSIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTWIDSAGRSYNR 721 ++L+F I +P++ +GKG ++ ++ +S +I E +T I + R Sbjct: 656 RMLLFPIKDLPQLGKGKGNKIINIPSARSKSREEFLSQLIVLPQGEQVT-IHAGKRKMGL 714 Query: 722 SENDLLGWLGKRGGVGSLVPKGF 744 +DL + G+RG G+++P+G Sbjct: 715 KASDLDNFRGERGRRGTMLPRGL 737 >gi|90580746|ref|ZP_01236549.1| DNA topoisomerase IV subunit A [Vibrio angustum S14] gi|90438014|gb|EAS63202.1| DNA topoisomerase IV subunit A [Vibrio angustum S14] Length = 758 Score = 510 bits (1314), Expect = e-142, Method: Compositional matrix adjust. Identities = 277/745 (37%), Positives = 442/745 (59%), Gaps = 25/745 (3%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 + V+ + LR E+ YL Y++ I +RA+P + DG KPV RRII+AMSE+GL A +KK Sbjct: 7 DGVEQLPLRKFTEDAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAMSELGLSATAKYKK 66 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTE 133 SAR VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S AA RYTE Sbjct: 67 SARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 126 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 +R+++ +E++L + + D+ ++ EP + P++ P++L NG +GIAVGMAT IP Sbjct: 127 SRLSRFSEVLLSELGQGTADWVPNFDGTMQEPKMLPARLPHILLNGVTGIAVGMATDIPP 186 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN +E+ AA+ +I+NP+ ++ L+E++ GPD+PT I+ S+ + + Y+ GRG ++R Sbjct: 187 HNAREVANAAVHMIENPKADLDALMEFVQGPDYPTEAEIITSKADLKKVYKSGRGSIKMR 246 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRI 311 A W E + IV+T +P+Q ++L+E+IA + AK++P++ED+RDES + RI Sbjct: 247 AVWHKE-----NGDIVITALPHQTSGAKLLEQIASQMRAKKLPMVEDLRDESDHENPTRI 301 Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371 V+ P++ +D + LM +F +D+E F N+N+L + PQV L I+ EWL +RR Sbjct: 302 VIVPRSNRIDCEQLMNHLFASTDLEKSFRANLNMLGLDGRPQVKGLVQIIAEWLEYRRTT 361 Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431 + RR +R+ + R+ IL+GLL AYLNIDE+I IIR+ED PK ++SRF L+ Q DAI Sbjct: 362 VRRRLQYRLDKVIARLHILEGLLAAYLNIDEVIEIIRSEDDPKAELMSRFDLSAIQADAI 421 Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491 L ++LR L KLEE +I+ E D L E+E+++ LL S ++ I KEI + + Sbjct: 422 LEIKLRQLAKLEEIKIRGEQDELSKEREQLEKLLGSERRLNTLIK------KEILADAEK 475 Query: 492 LG-RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDS 550 G RR+ E A KA ++ +I E ITVV+S +GWIR K H VD S L++K GDS Sbjct: 476 YGDERRSPLVEREEA-KALTERDLIPSEAITVVLSEKGWIRHAKGHEVDPSTLNYKSGDS 534 Query: 551 LKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDS 610 + + L +DG++Y L + +L S R GE I ++L +I + + Sbjct: 535 YLAHARGKSNLPAIFLGSDGRSYALESHSLPSARSQGEPITGRLNLTPGTNIRQVLMAED 594 Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVAVVGEN 667 L+ S G FI + +++++ + GK L V + + V + D + + Sbjct: 595 DQLWLMASDAGYGFICKSTDMVSKNKSGKALLTVPENAAVLPPQPVADIENDQILAITNE 654 Query: 668 RKLLIFSIDQIPEMSRGKG---VRLQSYKDGGISDVICF-KICEGLTWID--SAGRSYNR 721 ++L+F I +P++ +GKG + + S + + + + + T + + R Sbjct: 655 GRMLLFPIKDLPQLGKGKGNKIINIPSARSKAREEFLSYLTVISADTHVTLYAGKRKLGL 714 Query: 722 SENDLLGWLGKRGGVGSLVPKGFPR 746 +DL + G+RG G+++P+G R Sbjct: 715 KPSDLDNFRGERGRRGAMLPRGLQR 739 >gi|301511579|ref|ZP_07236816.1| DNA topoisomerase IV subunit A [Acinetobacter baumannii AB058] Length = 739 Score = 510 bits (1314), Expect = e-142, Method: Compositional matrix adjust. Identities = 278/732 (37%), Positives = 439/732 (59%), Gaps = 21/732 (2%) Query: 27 EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86 E+ YL YA+ I +RA+P + DG KPV RRI++AMSE+GL KKSAR VG+V+GK Sbjct: 19 EQAYLNYAMYVIMDRALPHISDGLKPVQRRIVYAMSELGLKSSGKPKKSARTVGDVLGKY 78 Query: 87 HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQVAELILQ 145 HPHGD + Y ++V +AQPF RYPLI GQGN+G+ D S AA RYTEA+++ +EL+L Sbjct: 79 HPHGDSACYKAMVLMAQPFSYRYPLIEGQGNWGSPDDPKSFAAMRYTEAKLSAYSELLLS 138 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 + + +++D ++ EP+ P++ PN+L NGT+GIAVGMAT IP HN++E+ + +A Sbjct: 139 ELGQGTSEWQDNFDGSLKEPITLPARVPNILLNGTTGIAVGMATDIPPHNLREVVKGTIA 198 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265 LI NP+ S EKL EYI PD PT I+ E +++ GRG +R+RA + +E+ Sbjct: 199 LIRNPQTSDEKLAEYIPAPDLPTKAEIITPPEELLKIQTTGRGSYRMRAVYTIEKNE--- 255 Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFPKNRSLDPD 323 IV+TE+PYQV S++I +IA+ + AK++PL+ D+RDES + R+V+ ++ +D + Sbjct: 256 --IVITELPYQVSGSKVITQIADQMQAKKLPLVVDVRDESDHENPTRLVIVLRSNRIDAE 313 Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383 +M +F +D+E+ + +N+N++ PQV + IL EW+ R++ + RR + + I Sbjct: 314 AVMSHLFATTDLESSYRVNLNMIGEDGRPQVKSIRRILLEWIEIRKKTVTRRLQYHLNRI 373 Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLE 443 ++R+ IL GLLIAYL+ID +I IIR ED+PKPV++ F++ E Q +AIL L+LR L KLE Sbjct: 374 EKRLHILAGLLIAYLDIDTVIRIIREEDQPKPVLMEHFNIDEIQAEAILELKLRHLAKLE 433 Query: 444 EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVS 503 E +I+ E D L A+ I L + + N I E++E + F RR+ V+ Sbjct: 434 EMEIRHEQDELSAKAAIIREQLENPESLKNLIISELKEDAKKFGDE-----RRSPI--VA 486 Query: 504 RADKATL-QQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDR 562 RA+ + +Q ++ E +TVV+S GW+R+ K VD L+++ GD T R Sbjct: 487 RAEAVQIKEQDLMPAETVTVVLSEAGWVRAAKGADVDAENLNYRAGDQYLSHAVGKTNQR 546 Query: 563 ILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGN 622 + L G++Y LP NL S RG G+ + + + ++ D +L+ SS G Sbjct: 547 VYFLDETGRSYALPISNLPSARGLGDPLSSKLSPASGVSFIQVYLDDDESELIAASSAGY 606 Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEK-MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEM 681 F + ++ N + GKTFL V + K + L+ H+AV+ +LLI + ++P + Sbjct: 607 GFKTQTKQLDTNAKAGKTFLTVPDKAKALPLISAQNMTHLAVLSSAGRLLILDLAELPNL 666 Query: 682 SRGKGVRL-QSYKDGGISDVICFKICEGLTWIDSAGRSYNRSE-NDLLGWLGKRGGVGSL 739 ++GKG +L Q I + + E + + AG+ + + + +DL ++GKR G L Sbjct: 667 NKGKGNKLIQLEGKEQILSMTTLNLDEIIQVV--AGQQHLKLKGDDLQKYMGKRASKGQL 724 Query: 740 VPKGFPRSGKFL 751 +P+G+ ++ K L Sbjct: 725 LPRGYQKANKLL 736 >gi|312797003|ref|YP_004029925.1| Topoisomerase IV subunit A [Burkholderia rhizoxinica HKI 454] gi|312168778|emb|CBW75781.1| Topoisomerase IV subunit A (EC 5.99.1.-) [Burkholderia rhizoxinica HKI 454] Length = 778 Score = 510 bits (1313), Expect = e-142, Method: Compositional matrix adjust. Identities = 292/754 (38%), Positives = 431/754 (57%), Gaps = 42/754 (5%) Query: 27 EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86 E YL YA+S +K RA+P++ DG KPV RRI++AM EMGL A KSAR+VG+V+GK Sbjct: 25 ERAYLDYAVSVVKSRALPEVTDGQKPVQRRILYAMHEMGLAADAKPVKSARVVGDVLGKY 84 Query: 87 HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQG 146 HPHGD S Y++LVRLAQ F RYPLI GQGNFG+ DGD AAA RYTEAR+T +A+L+L Sbjct: 85 HPHGDSSAYEALVRLAQDFSMRYPLIDGQGNFGSRDGDGAAAMRYTEARLTPIAQLLLDE 144 Query: 147 VDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALAL 206 +D+ VDF Y+ EP P + P +L NG SGIAVGMAT +P HN++E+ +AA+ L Sbjct: 145 IDQGTVDFIPNYDGSFEEPKSLPVRLPFVLLNGASGIAVGMATEVPPHNLREVAQAAIEL 204 Query: 207 IDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSW 266 I NP + L+E I GPDFP GG I+ S I +Y GRG +VRARW +EE+ RG W Sbjct: 205 IRNPNLDHAALMERIPGPDFPGGGQIISSPAEIAAAYESGRGSLKVRARWKIEELARGQW 264 Query: 267 CIVVTEIPYQVQKSRLIEKIAELIIAK------------------RIPLLEDIRDESAED 308 +V+TE+P +++E+I EL K + LL+ +RDES +D Sbjct: 265 QLVITELPPGTSSQKVLEEIEELTNPKVKLGKKTLTPEQLQTKQSLLALLDAVRDESGKD 324 Query: 309 --VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366 VR+VL PK+ +DP + ++ + +E+ P+N+ ++ P+ L IL+EW+ Sbjct: 325 SPVRLVLEPKSSRIDPTEFVNTLLAYTSLESSAPINLVMIGADGRPRQKGLGEILREWIG 384 Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426 +R + RR+ FR+ + R+ IL+G +I +LN+DE+I IIR D+PK +++ F L++ Sbjct: 385 YRFATVTRRTRFRLSKVQDRIHILEGRMIVFLNLDEVIRIIRESDEPKAALIAAFGLSQR 444 Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486 Q D IL +RLR L +LE+ +I+ EL L EK +++ LL S +A + +KEI Sbjct: 445 QADDILEIRLRQLARLEKIKIEKELGELRDEKARLEQLLGS------DVAMKRLIIKEIE 498 Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546 + + G R T + DK +A + EP+TVV+S RGW+R+LK H +D S FK Sbjct: 499 ADAKQFGDARRTLIQ---QDKRATFEARVVDEPVTVVVSQRGWVRTLKGHGLDASGFTFK 555 Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606 GDSL A T D ++ ++G+ Y++P L GRG G + LI+L ++ F Sbjct: 556 AGDSLYAAFQCRTPDTLIAWGSNGRVYSVPVAALPGGRGDGVPVTSLIELEAGTHLMHYF 615 Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD--HVAVV 664 LL+ SS G FI ++I+ + GK+F+ + + + + + D VA + Sbjct: 616 AAPLEQPLLLASSNGFGFIARIGDMISRVKAGKSFMTIDAGAQPLAPMPMWPDASQVACL 675 Query: 665 G----ENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719 + +LL+F +D++ +S G+GV L DG + I + + AGR Sbjct: 676 ALGAKDETRLLVFGLDEMKTLSSGGRGVTLIGL-DGNEQLLQALAIGQAGLLLSGAGRGG 734 Query: 720 NRSENDLLG-----WLGKRGGVGSLVPKGFPRSG 748 + L+G ++GKR G F SG Sbjct: 735 KPQQQRLVGDALAPYVGKRARRGKAPAVKFKVSG 768 >gi|88758894|emb|CAJ77831.1| DNA gyrase [Acinetobacter baumannii AYE] Length = 745 Score = 510 bits (1313), Expect = e-142, Method: Compositional matrix adjust. Identities = 278/732 (37%), Positives = 440/732 (60%), Gaps = 21/732 (2%) Query: 27 EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86 E+ YL YA+ I +RA+P + DG KPV RRI++AMSE+GL KKSAR VG+V+GK Sbjct: 25 EQAYLNYAMYVIMDRALPHISDGLKPVQRRIVYAMSELGLKSSGKPKKSARTVGDVLGKY 84 Query: 87 HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQVAELILQ 145 HPHGD + Y+++V +AQPF RYPLI GQGN+G+ D S AA RYTEA+++ +EL+L Sbjct: 85 HPHGDLACYEAMVLMAQPFSYRYPLIEGQGNWGSPDDPKSFAAMRYTEAKLSAYSELLLS 144 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 + + +++D ++ EP+ P++ PN+L NGT+GIAVGMAT IP HN++E+ + +A Sbjct: 145 ELGQGTSEWQDNFDGSLKEPITLPARVPNILLNGTTGIAVGMATDIPPHNLREVVKGTIA 204 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265 LI NP+ S EKL EYI PD PT I+ E +++ GRG +R+RA + +E+ Sbjct: 205 LIRNPQTSDEKLAEYIPAPDLPTKAEIITPPEELLKIQTTGRGSYRMRAVYTIEKNE--- 261 Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFPKNRSLDPD 323 IV+TE+PYQV S++I +IA+ + AK++PL+ D+RDES + R+V+ ++ +D + Sbjct: 262 --IVITELPYQVSGSKVITQIADQMQAKKLPLVVDVRDESDHENPTRLVIVLRSNRIDAE 319 Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383 +M +F +D+E+ + +N+N++ PQV + IL EW+ R++ + RR + + I Sbjct: 320 AVMSHLFATTDLESSYRVNLNMIGEDGRPQVKSIRRILLEWIEIRKKTVTRRLQYHLNRI 379 Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLE 443 ++R+ IL GLLIAYL+ID +I IIR ED+PKPV++ F++ E Q +AIL L+LR L KLE Sbjct: 380 EKRLHILAGLLIAYLDIDTVIRIIREEDQPKPVLMEHFNIDEIQAEAILELKLRHLAKLE 439 Query: 444 EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVS 503 E +I+ E D L A+ I L + + N I E++E + F RR+ V+ Sbjct: 440 EMEIRHEQDELSAKAAIIREQLENPESLKNLIISELKEDAKKFGD-----ERRSPI--VA 492 Query: 504 RADKATL-QQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDR 562 RA+ + +Q ++ E +TVV+S GW+R+ K VD L+++ GD T R Sbjct: 493 RAEAVQIKEQDLMPAETVTVVLSEAGWVRAAKGADVDAENLNYRAGDQYLSHAVGKTNQR 552 Query: 563 ILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGN 622 + L G++Y LP NL S RG G+ + + + ++ D +L+ SS G Sbjct: 553 VYFLDETGRSYALPISNLPSARGLGDPLSSKLSPASGVSFIQVYLDDDESELIAASSAGY 612 Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEK-MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEM 681 F + ++ N + GKTFL V + K + L+ H+AV+ +LLI + ++P + Sbjct: 613 GFKTQTKQLDTNAKAGKTFLTVPDKAKALPLISAQNMTHLAVLSSAGRLLILDLAELPNL 672 Query: 682 SRGKGVRL-QSYKDGGISDVICFKICEGLTWIDSAGRSYNRSE-NDLLGWLGKRGGVGSL 739 ++GKG +L Q I + + E + + AG+ + + + +DL ++GKR G L Sbjct: 673 NKGKGNKLIQLEGKEQILSMTTLNLDEIIQVV--AGQQHLKLKGDDLQKYMGKRASKGQL 730 Query: 740 VPKGFPRSGKFL 751 +P+G+ ++ K L Sbjct: 731 LPRGYQKANKLL 742 >gi|161524096|ref|YP_001579108.1| DNA topoisomerase IV subunit A [Burkholderia multivorans ATCC 17616] gi|189351147|ref|YP_001946775.1| DNA topoisomerase IV subunit A [Burkholderia multivorans ATCC 17616] gi|160341525|gb|ABX14611.1| DNA topoisomerase IV, A subunit [Burkholderia multivorans ATCC 17616] gi|189335169|dbj|BAG44239.1| topoisomerase IV subunit A [Burkholderia multivorans ATCC 17616] Length = 773 Score = 510 bits (1313), Expect = e-142, Method: Compositional matrix adjust. Identities = 283/699 (40%), Positives = 422/699 (60%), Gaps = 32/699 (4%) Query: 19 AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78 A++L E+ YL+YA+S +K RA+PD+ DG KPV RRI++AM+EMGL A KSAR+ Sbjct: 19 ALTLGNYAEQAYLSYAVSVVKSRALPDVCDGQKPVQRRILYAMNEMGLGPDAKPVKSARV 78 Query: 79 VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138 VG+V+GK HPHGDQS YD+LVRLAQ F RYPLI GQGNFG+ DGD AAA RYTEAR+T Sbjct: 79 VGDVLGKYHPHGDQSAYDALVRLAQDFSLRYPLIDGQGNFGSRDGDGAAAMRYTEARLTP 138 Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198 +++L+L +D+ VDF Y+ EP PS+ P +L NG SGIAVG+AT IPSHN++E Sbjct: 139 ISKLLLDEIDQGTVDFMPNYDGSFEEPKTLPSRMPFVLLNGASGIAVGLATEIPSHNLRE 198 Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258 + AA+ALI NP+++ E+L+ I GPDFP GG I+ S I +Y GRG +VRARW + Sbjct: 199 VAAAAVALIRNPKLTHEELMTLIPGPDFPGGGQIISSDAEIASAYETGRGSLKVRARWKI 258 Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAK------------------RIPLLED 300 E++ RG W +VVTE+P +++E+I EL K + LL+ Sbjct: 259 EDLARGQWQLVVTELPPNTSCQKVLEEIEELTNPKLKLGKKTLTPEQLNTKKAMLDLLDA 318 Query: 301 IRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLD 358 +RDES ++ VR+V PK+R++D + S+ + +E+ LN+ ++ P L Sbjct: 319 VRDESGKEAAVRLVFEPKSRTIDQTEFVNSLLAHTSLESNATLNLVMIGADGRPGQKGLL 378 Query: 359 GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV 418 IL EW+ R+ + RR R+ +D R+ IL+G +I +LN+DE+I IIR D+PK ++ Sbjct: 379 TILDEWVKFRQMTMTRRCRHRLGKVDDRIHILEGRMIVFLNLDEVIRIIRESDEPKAALM 438 Query: 419 SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE 478 S F LT+ Q + IL +RLR L +LE+ +I+ EL++L EK K++ LL N+ A + Sbjct: 439 SAFGLTDRQAEDILEIRLRQLARLEKIKIEKELESLRDEKAKLEELLA------NESAMK 492 Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV 538 +KEI + + G R T + + +AT +A + EP+TVV+S +GW+R+LK H + Sbjct: 493 RLMIKEIEADAKQYGDDRRTL--IQQEKRATF-EAKVVDEPVTVVVSQKGWVRALKGHGL 549 Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNH 598 D + FK GDSL A T DR++ + G+ Y++ L GRG G + LI+L Sbjct: 550 DPAGFSFKAGDSLYAAFQCRTPDRLIAWGSSGRVYSVDVSVLPGGRGDGVPVTSLIELES 609 Query: 599 NQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV--SSEEKMKLVVKV 656 ++ + + LL+ SS G FI + ++++ + GK+F+ + + + V Sbjct: 610 GSHLMHYYAASADQPLLLASSNGFGFIAKVGDMVSRVKAGKSFMTIDPGAVPLAPMPVLP 669 Query: 657 TGDHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKD 694 VA + +LL+F ID++ +S G+GV L + D Sbjct: 670 NATQVACLSSGGRLLVFGIDEMKTLSGGGRGVTLMALDD 708 >gi|294648919|ref|ZP_06726373.1| DNA topoisomerase IV subunit A [Acinetobacter haemolyticus ATCC 19194] gi|292825208|gb|EFF83957.1| DNA topoisomerase IV subunit A [Acinetobacter haemolyticus ATCC 19194] Length = 739 Score = 510 bits (1313), Expect = e-142, Method: Compositional matrix adjust. Identities = 277/731 (37%), Positives = 437/731 (59%), Gaps = 19/731 (2%) Query: 27 EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86 E+ YL YA+ I +RA+P + DG KPV RRI++AMSE+GL KKSAR VG+V+GK Sbjct: 19 EQAYLNYAMYVIMDRALPHISDGLKPVQRRIVYAMSELGLKSTGKPKKSARTVGDVLGKY 78 Query: 87 HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQVAELILQ 145 HPHGD + Y+++V +AQPF RYPL+ GQGN+G+ D S AA RYTEA+++ +EL+L Sbjct: 79 HPHGDSACYEAMVLMAQPFSYRYPLVEGQGNWGSPDDPKSFAAMRYTEAKLSAYSELLLS 138 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 + + +++D ++ EP+ P++ PN+L NGT+GIAVGMAT IP HN++E+ + +A Sbjct: 139 ELGQGTSEWQDNFDGSMKEPITLPARIPNILLNGTTGIAVGMATDIPPHNLREVVKGTIA 198 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265 LI NPE + EKL EYI PD PT I+ E +++ GRG +R+R+ + VE+ Sbjct: 199 LIRNPETTDEKLAEYIPAPDLPTKAEIITPPEELLKIQTTGRGSYRMRSIYSVEKNE--- 255 Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES--AEDVRIVLFPKNRSLDPD 323 IV+TE+PYQV S++I +IA+ +IAK++PL+ DIRDES R+V+ ++ +D + Sbjct: 256 --IVITELPYQVSGSKVITQIADQMIAKKLPLVADIRDESDHKNPTRLVIVLRSNRVDAE 313 Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383 +M +F +D+E+ + +N+N++ PQV + IL EW+ R++ + RR + + I Sbjct: 314 TVMSHLFATTDLESSYRVNLNMIGADGRPQVKSIRRILLEWIEIRKQTVTRRLQYHLTKI 373 Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLE 443 ++R+ IL GLLIAYL+ID +I IIR ED+PKPV++ F + E Q +AIL L+LR L KLE Sbjct: 374 EKRLHILAGLLIAYLDIDTVIRIIREEDQPKPVLMQHFGIDEIQAEAILELKLRHLAKLE 433 Query: 444 EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVS 503 E +I+ E + L A+ I L + + N I E++E + F RR+ V+ Sbjct: 434 EMEIRREQEELEAKAAVIREQLANPESLKNLIITELKEDAKKFGDD-----RRSPI--VA 486 Query: 504 RADKATL-QQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDR 562 RA+ + +Q ++ E +TVV+S GW+R+ K VD + L+++ GD T R Sbjct: 487 RAEAVQIREQDLMPAETVTVVLSEAGWVRAAKGADVDAANLNYRAGDQYLSHAVGKTNQR 546 Query: 563 ILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGN 622 + L G++Y LP +L S RG GE + + + V D +LLV SS G Sbjct: 547 VYFLDQKGRSYALPISSLPSARGLGEPLSSKLSPASGVSFIQVLVEDDANELLVASSNGY 606 Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEK-MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEM 681 F + +++ N + GK FL V + K + L+ HVA++ + +LLI + ++P + Sbjct: 607 GFKTQATQLDTNAKAGKAFLTVMEKAKALPLLPIQQATHVAILSSSGRLLIIDLAELPVL 666 Query: 682 SRGKGVRL-QSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740 ++GKG +L Q + I + + E + + + + +DL +LGKR G L+ Sbjct: 667 NKGKGNKLIQLDEKEQILSMTTLALDE-IIQVAAGQQHLKLKGDDLQKYLGKRATKGQLL 725 Query: 741 PKGFPRSGKFL 751 P+G+ ++ + Sbjct: 726 PRGYQKANRLF 736 >gi|169797610|ref|YP_001715403.1| DNA topoisomerase IV subunit A [Acinetobacter baumannii AYE] gi|332851017|ref|ZP_08433152.1| DNA topoisomerase IV, A subunit [Acinetobacter baumannii 6013150] gi|332865611|ref|ZP_08436444.1| DNA topoisomerase IV, A subunit [Acinetobacter baumannii 6013113] gi|169150537|emb|CAM88445.1| DNA topoisomerase IV, subunit A [Acinetobacter baumannii AYE] gi|332730300|gb|EGJ61624.1| DNA topoisomerase IV, A subunit [Acinetobacter baumannii 6013150] gi|332735200|gb|EGJ66278.1| DNA topoisomerase IV, A subunit [Acinetobacter baumannii 6013113] Length = 739 Score = 510 bits (1313), Expect = e-142, Method: Compositional matrix adjust. Identities = 278/732 (37%), Positives = 440/732 (60%), Gaps = 21/732 (2%) Query: 27 EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86 E+ YL YA+ I +RA+P + DG KPV RRI++AMSE+GL KKSAR VG+V+GK Sbjct: 19 EQAYLNYAMYVIMDRALPHISDGLKPVQRRIVYAMSELGLKSSGKPKKSARTVGDVLGKY 78 Query: 87 HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQVAELILQ 145 HPHGD + Y+++V +AQPF RYPLI GQGN+G+ D S AA RYTEA+++ +EL+L Sbjct: 79 HPHGDLACYEAMVLMAQPFSYRYPLIEGQGNWGSPDDPKSFAAMRYTEAKLSAYSELLLS 138 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 + + +++D ++ EP+ P++ PN+L NGT+GIAVGMAT IP HN++E+ + +A Sbjct: 139 ELGQGTSEWQDNFDGSLKEPITLPARVPNILLNGTTGIAVGMATDIPPHNLREVVKGTIA 198 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265 LI NP+ S EKL EYI PD PT I+ E +++ GRG +R+RA + +E+ Sbjct: 199 LIRNPQTSDEKLAEYIPAPDLPTKAEIITPPEELLKIQTTGRGSYRMRAVYTIEKNE--- 255 Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFPKNRSLDPD 323 IV+TE+PYQV S++I +IA+ + AK++PL+ D+RDES + R+V+ ++ +D + Sbjct: 256 --IVITELPYQVSGSKVITQIADQMQAKKLPLVVDVRDESDHENPTRLVIVLRSNRIDAE 313 Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383 +M +F +D+E+ + +N+N++ PQV + IL EW+ R++ + RR + + I Sbjct: 314 AVMSHLFATTDLESSYRVNLNMIGEDGRPQVKSIRRILLEWIEIRKKTVTRRLQYHLNRI 373 Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLE 443 ++R+ IL GLLIAYL+ID +I IIR ED+PKPV++ F++ E Q +AIL L+LR L KLE Sbjct: 374 EKRLHILAGLLIAYLDIDTVIRIIREEDQPKPVLMEHFNIDEIQAEAILELKLRHLAKLE 433 Query: 444 EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVS 503 E +I+ E D L A+ I L + + N I E++E + F RR+ V+ Sbjct: 434 EMEIRHEQDELSAKAAIIREQLENPESLKNLIISELKEDAKKFGDE-----RRSPI--VA 486 Query: 504 RADKATL-QQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDR 562 RA+ + +Q ++ E +TVV+S GW+R+ K VD L+++ GD T R Sbjct: 487 RAEAVQIKEQDLMPAETVTVVLSEAGWVRAAKGADVDAENLNYRAGDQYLSHAVGKTNQR 546 Query: 563 ILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGN 622 + L G++Y LP NL S RG G+ + + + ++ D +L+ SS G Sbjct: 547 VYFLDETGRSYALPISNLPSARGLGDPLSSKLSPASGVSFIQVYLDDDESELIAASSAGY 606 Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEK-MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEM 681 F + ++ N + GKTFL V + K + L+ H+AV+ +LLI + ++P + Sbjct: 607 GFKTQTKQLDTNAKAGKTFLTVPDKAKALPLISAQNMTHLAVLSSAGRLLILDLAELPNL 666 Query: 682 SRGKGVRL-QSYKDGGISDVICFKICEGLTWIDSAGRSYNRSE-NDLLGWLGKRGGVGSL 739 ++GKG +L Q I + + E + + AG+ + + + +DL ++GKR G L Sbjct: 667 NKGKGNKLIQLEGKEQILSMTTLNLDEIIQVV--AGQQHLKLKGDDLQKYMGKRASKGQL 724 Query: 740 VPKGFPRSGKFL 751 +P+G+ ++ K L Sbjct: 725 LPRGYQKANKLL 736 >gi|257464718|ref|ZP_05629089.1| DNA topoisomerase IV subunit A [Actinobacillus minor 202] gi|257450378|gb|EEV24421.1| DNA topoisomerase IV subunit A [Actinobacillus minor 202] Length = 747 Score = 510 bits (1313), Expect = e-142, Method: Compositional matrix adjust. Identities = 271/749 (36%), Positives = 453/749 (60%), Gaps = 26/749 (3%) Query: 9 SNTLVE-ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67 SN ++ E V+ + ++ E+ YL Y++ I +RA+P + DG KPV RRII+AMSE+GL+ Sbjct: 2 SNEIINYEGVEQMPIKRFTEDAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAMSELGLN 61 Query: 68 FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAA 127 A + K+AR VG+V+GK HPHGD + Y ++V +AQ F RYPLI GQGN+G+++ D AA Sbjct: 62 ATAKYAKAARTVGDVLGKFHPHGDSACYGAMVGMAQDFTFRYPLIDGQGNWGSLE-DDAA 120 Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187 AYRYTEAR+T++A ++L +D+ VDF+ ++ EPV FPS+ P++L NG++GIAVGM Sbjct: 121 AYRYTEARLTKIAAILLSELDQGTVDFKPNFDGSKVEPVTFPSRLPHILLNGSTGIAVGM 180 Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247 AT IP HN+ EI EA++ L++NP+ ++ LL + GPD+PT I+ + I + Y GR Sbjct: 181 ATDIPPHNINEIAEASVMLLENPKATLSDLLTVVQGPDYPTEAEIITPKSDIAKIYEQGR 240 Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307 G R+RA W E+ IV+ +P+Q S++I +IA+ + K++P+++DIRDES Sbjct: 241 GSIRMRAVWSKED-----GEIVIQALPHQASPSKIIAQIADQMRNKKLPMVDDIRDESDH 295 Query: 308 D--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365 + +RIV+ P++ +D D LM+ +F +D+E + +NMN++ + P V L IL EWL Sbjct: 296 ENPIRIVIVPRSNRIDFDALMDHLFATTDLEKSYRVNMNMIGLDGKPAVKNLHEILTEWL 355 Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425 + RR + RR + ++ I R+ IL GL+IA+LNIDE+I+IIRNED+PK V+++RF+L++ Sbjct: 356 SFRRSTVTRRLNDKLDKILNRLHILDGLMIAFLNIDEVISIIRNEDEPKAVLMARFNLSD 415 Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485 Q +AILNLRLR L KLEE+++++E + L +E++++ +L S ++ I EI+ + Sbjct: 416 IQAEAILNLRLRHLAKLEEHELQAEKNQLESERDELRLILGSERRLNTLIKKEIQADAKT 475 Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545 F+ RR+ E + A KA + + E +TV++S +GW+R K H +D+ L + Sbjct: 476 FADP-----RRSPLVERAEA-KAISESDLTPTEDVTVILSEKGWVRCAKGHDIDVEGLSY 529 Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605 + GD + ++ L + G+ Y L +L S R GE + I L + Sbjct: 530 RAGDGYLAHTRGRSNQPVVFLDSTGRTYALDPTSLPSARSQGEPLTGKITLPEGATVEQV 589 Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVA 662 + K+L+ S G FI ++++ + GK + ++ K+ +L+ + Sbjct: 590 LMAAPETKVLMASDSGYGFICTFEDLVSRNKAGKAVISLTENAKVLAPQLIDNEEDISLV 649 Query: 663 VVGENRKLLIFSIDQIPEMSRGKGVRL-----QSYKDGG--ISDVICFKICEGLTWIDSA 715 + ++L+F + ++P +S+GKG ++ Q+ K+ ++ ++ K + L ++ S Sbjct: 650 AMSSAGRMLVFPLAELPILSKGKGNKIINISAQAAKERSELLARLLLIKANQSLVFV-SG 708 Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGF 744 R +D+ + G+R GS + +G Sbjct: 709 KRKITLKPSDIDNYRGERARKGSQLVRGL 737 >gi|325124180|gb|ADY83703.1| DNA topoisomerase IV, subunit A [Acinetobacter calcoaceticus PHEA-2] Length = 739 Score = 510 bits (1313), Expect = e-142, Method: Compositional matrix adjust. Identities = 280/732 (38%), Positives = 439/732 (59%), Gaps = 21/732 (2%) Query: 27 EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86 E+ YL YA+ I +RA+P + DG KPV RRI++AMSE+GL KKSAR VG+V+GK Sbjct: 19 EQAYLNYAMYVIMDRALPHISDGLKPVQRRIVYAMSELGLKSSGKPKKSARTVGDVLGKY 78 Query: 87 HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQVAELILQ 145 HPHGD + Y+++V +AQPF RYPLI GQGN+G+ D S AA RYTEA+++ +EL+L Sbjct: 79 HPHGDSACYEAMVLMAQPFSYRYPLIEGQGNWGSPDDPKSFAAMRYTEAKLSAYSELLLS 138 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 + + +++D ++ EP+ P++ PN+L NGT+GIAVGMAT IP HN++E+ + +A Sbjct: 139 ELGQGTSEWQDNFDGSLKEPITLPARVPNILLNGTTGIAVGMATDIPPHNLREVIKGTIA 198 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265 LI NP+ S EKL EYI PD PT I+ E +++ GRG +R+RA + +E+ Sbjct: 199 LIRNPQTSDEKLAEYIPAPDLPTKAEIITPPEELLKIQTTGRGSYRMRAVYTIEKNE--- 255 Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFPKNRSLDPD 323 IV+TE+PYQV S++I +IA+ + AK++PL+ D+RDES + R+V+ ++ +D + Sbjct: 256 --IVITELPYQVSGSKVITQIADQMQAKKLPLVVDVRDESDHENPTRLVIVLRSNRIDAE 313 Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383 +M +F +D+E+ + +N+N++ PQV + IL EW+ R++ + RR + + I Sbjct: 314 AVMSHLFATTDLESSYRVNLNMIGEDGRPQVKSIRRILLEWIEIRKKTVTRRLEYHLNRI 373 Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLE 443 ++R+ IL GLLIAYL+ID +I IIR ED+PKPV++ F + E Q +AIL L+LR L KLE Sbjct: 374 EKRLHILAGLLIAYLDIDTVIRIIREEDQPKPVLMDHFKIDEIQAEAILELKLRHLAKLE 433 Query: 444 EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVS 503 E +I+ E D L A+ I L + + N I E++E + F RR+ V+ Sbjct: 434 EMEIRQEQDELSAKAAIIREQLENPESLKNLIIGELKEDAKKFGDE-----RRSPI--VA 486 Query: 504 RADKATL-QQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDR 562 RA+ + +Q ++ E +TVV+S GWIR+ K VD L+++ GD T R Sbjct: 487 RAEAVQIREQDLMPAEAVTVVLSEAGWIRAAKGADVDAENLNYRAGDQYLSHAVGKTNQR 546 Query: 563 ILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGN 622 I L G++Y LP NL S RG GE + + + ++ D +L+ SS G Sbjct: 547 IYFLDETGRSYALPISNLPSARGLGEPLSSKLAPASGVAFIQVYLDDEESELIAASSSGY 606 Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEK-MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEM 681 F + ++ N + GK+FL V + K + L+ H+AV+ +LLI + ++P + Sbjct: 607 GFKTQVKQLDTNAKAGKSFLSVPEKSKALPLISAQNMTHLAVLSSAGRLLIIDLSELPNL 666 Query: 682 SRGKGVRL-QSYKDGGISDVICFKICEGLTWIDSAGRSYNRSE-NDLLGWLGKRGGVGSL 739 ++GKG +L Q I + + E + + AG+ + + + +DL ++GKR G L Sbjct: 667 NKGKGNKLIQLEAKEQILSMTTLNLDEIIQVV--AGQQHLKLKGDDLQKYMGKRASKGHL 724 Query: 740 VPKGFPRSGKFL 751 +P+G+ ++ K L Sbjct: 725 LPRGYQKANKLL 736 >gi|239502129|ref|ZP_04661439.1| DNA topoisomerase IV subunit A [Acinetobacter baumannii AB900] Length = 739 Score = 510 bits (1313), Expect = e-142, Method: Compositional matrix adjust. Identities = 278/732 (37%), Positives = 440/732 (60%), Gaps = 21/732 (2%) Query: 27 EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86 E+ YL YA+ I +RA+P + DG KPV RRI++AMSE+GL KKSAR VG+V+GK Sbjct: 19 EQAYLNYAMYVIMDRALPHISDGLKPVQRRIVYAMSELGLKSSGKPKKSARTVGDVLGKY 78 Query: 87 HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQVAELILQ 145 HPHGD + Y+++V +AQPF RYPLI GQGN+G+ D S AA RYTEA+++ +EL+L Sbjct: 79 HPHGDSACYEAMVLMAQPFSYRYPLIEGQGNWGSPDDPKSFAAMRYTEAKLSAYSELLLS 138 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 + + +++D ++ EP+ P++ PN+L NGT+GIAVGMAT IP HN++E+ + +A Sbjct: 139 ELGQGTSEWQDNFDGSLKEPITLPARVPNILLNGTTGIAVGMATDIPPHNLREVVKGTIA 198 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265 LI NP+ S EKL EYI PD PT I+ E +++ GRG +R+RA + +E+ Sbjct: 199 LIRNPQTSDEKLAEYIPAPDLPTKAEIITPPEELLKIQTTGRGSYRMRAVYTIEKNE--- 255 Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFPKNRSLDPD 323 IV+TE+PYQV S++I +IA+ + AK++PL+ D+RDES + R+V+ ++ +D + Sbjct: 256 --IVITELPYQVSGSKVITQIADQMQAKKLPLVVDVRDESDHENPTRLVIVLRSNRIDAE 313 Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383 +M +F +D+E+ + +N+N++ PQV + IL EW+ R++ + RR + + I Sbjct: 314 AVMSHLFATTDLESSYRVNLNMIGEDGRPQVKSIRRILLEWIEIRKKTVTRRLQYHLNRI 373 Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLE 443 ++R+ IL GLLIAYL+ID +I IIR ED+PKPV++ F++ E Q +AIL L+LR L KLE Sbjct: 374 EKRLHILAGLLIAYLDIDTVIRIIREEDQPKPVLMEHFNIDEIQAEAILELKLRHLAKLE 433 Query: 444 EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVS 503 E +I+ E D L A+ I L + + N I E++E + F RR+ V+ Sbjct: 434 EMEIRHEQDELSAKAAIIREQLENPESLKNLIIGELKEDAKKFGD-----ERRSPI--VA 486 Query: 504 RADKATL-QQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDR 562 RA+ + +Q ++ E +TVV+S GW+R+ K VD L+++ GD T R Sbjct: 487 RAEAVQIKEQDLMPAETVTVVLSEAGWVRAAKGADVDAENLNYRAGDQYLSHAVGKTNQR 546 Query: 563 ILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGN 622 + L G++Y LP NL S RG G+ + + + ++ D +L+ SS G Sbjct: 547 VYFLDETGRSYALPISNLPSARGLGDPLSSKLSPASGVSFIQVYLDDDESELIAASSAGY 606 Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEK-MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEM 681 F + ++ N + GKTFL V + K + L+ H+AV+ +LLI + ++P + Sbjct: 607 GFKTQTKQLDTNAKAGKTFLTVPDKAKALPLISAQNMTHLAVLSSAGRLLILDLVELPNL 666 Query: 682 SRGKGVRL-QSYKDGGISDVICFKICEGLTWIDSAGRSYNRSE-NDLLGWLGKRGGVGSL 739 ++GKG +L Q I + + E + + AG+ + + + +DL ++GKR G L Sbjct: 667 NKGKGNKLIQLEGKEQILSMTTLNLDEIIQVV--AGQQHLKLKGDDLQKYMGKRASKGQL 724 Query: 740 VPKGFPRSGKFL 751 +P+G+ ++ K L Sbjct: 725 LPRGYQKANKLL 736 >gi|119470527|ref|ZP_01613230.1| DNA topoisomerase IV subunit A [Alteromonadales bacterium TW-7] gi|119446228|gb|EAW27505.1| DNA topoisomerase IV subunit A [Alteromonadales bacterium TW-7] Length = 765 Score = 510 bits (1313), Expect = e-142, Method: Compositional matrix adjust. Identities = 273/753 (36%), Positives = 443/753 (58%), Gaps = 23/753 (3%) Query: 6 ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65 +S+++TL+ + ++ ++ E+ YL Y++ I +RA+P + DG KPV RRII+AMSE+G Sbjct: 1 MSDTDTLLMQGIEQQTMGRFTEDAYLNYSMYVIMDRALPHVGDGLKPVQRRIIYAMSELG 60 Query: 66 LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124 L A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D Sbjct: 61 LSAAAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAADDPK 120 Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184 S AA RYTEAR+++ +E++L+ + + VD+ ++ EPVV PS+ P++L NG +GIA Sbjct: 121 SFAAMRYTEARLSKFSEVLLKELGQGTVDWTPNFDGTLDEPVVLPSRLPHILLNGITGIA 180 Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244 VGMAT IP HNV+E+ A L+D P+ +++LLE + PD+PT I+ + I + Y+ Sbjct: 181 VGMATDIPPHNVREVASACCLLLDKPKTELDELLELVHAPDYPTDAEIITPKADIHKIYK 240 Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304 GRG ++RA + EE G IV+T +P+Q +++E+IA + AK++P++ D+RDE Sbjct: 241 TGRGSIKMRAVYS-EEQGD----IVITALPHQCSGGKVLEQIAAQMNAKKLPMIADLRDE 295 Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362 S + RIV+ P++ + + LM +F +D+E + +N+N+L + PQV L IL Sbjct: 296 SDHENPTRIVIIPRSNRIKAEPLMAHLFATTDLEKNYRVNLNMLGLDGRPQVKDLRSILS 355 Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422 EWL RRE + RR +R+ + R+ IL+GLL A+LNIDE+I IIR+EDKPKP+++ RF Sbjct: 356 EWLIFRRETVRRRLQYRLDKVLARLHILEGLLAAFLNIDEVIEIIRSEDKPKPILMQRFD 415 Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482 LT+ Q +AIL L+LR L KLEE++I+ E D L E++K++ L S ++ + EI+E Sbjct: 416 LTDIQAEAILELKLRHLAKLEEFKIRGEQDELAKERDKLELTLGSDRRMSTLLKKEIQEA 475 Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542 E++ RR+ E S A KA ++ +I E +TVV+S++GW R K H +D Sbjct: 476 AEMYGDD-----RRSPVIERSEA-KALNEKDLIPSESVTVVLSDKGWARVGKGHDLDAQG 529 Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602 L ++ GD+ + + + + L + G+A+ A +L S R GE + +L + Sbjct: 530 LSYRSGDAYRASARGKSNQPAVFLDSAGRAFATDAHSLPSARSQGEPMTGRFNLTTGANF 589 Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE---KMKLVVKVTGD 659 + + + LL+ S G FI + ++++ + GK + V K V V D Sbjct: 590 EHVVMAEDSQVLLMASDAGYGFITDFKDLVSKNKNGKALVSVPKGGILLKPIRVSDVASD 649 Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGIS------DVICFKICEGLTWID 713 + + ++L+F + +P++ +GKG ++ S + V+ + Sbjct: 650 YCMAISNEGRMLLFPLRDLPKLGKGKGNKIISIPGAKVQAREEFVKVLAVVPLGSSVTLH 709 Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746 + R DL + G+RG G+ +P+G R Sbjct: 710 AGKRKLTLKPTDLEHYHGERGRRGNKLPRGLQR 742 >gi|330448752|ref|ZP_08312399.1| DNA topoisomerase IV, A subunit [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328492943|dbj|GAA06896.1| DNA topoisomerase IV, A subunit [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 759 Score = 510 bits (1313), Expect = e-142, Method: Compositional matrix adjust. Identities = 276/745 (37%), Positives = 440/745 (59%), Gaps = 25/745 (3%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 + V+ + LR E+ YL Y++ I +RA+P + DG KPV RRI++AMSE+GL A +KK Sbjct: 7 DGVEQLPLRKFTEDAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLSATAKYKK 66 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTE 133 SAR VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S AA RYTE Sbjct: 67 SARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 126 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 +R+++ +E++L + + D+ ++ EP + P++ P++L NG +GIAVGMAT IP Sbjct: 127 SRLSRFSEVLLSELGQGTADWVPNFDGTMQEPKMLPARLPHILLNGVTGIAVGMATDIPP 186 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN +E+ AA+ +IDNP+ ++ L+E++ GPD+PT I+ S+ + + Y+ GRG ++R Sbjct: 187 HNAREVANAAVHMIDNPKADLDALMEFVQGPDYPTEAEIITSKADLKKVYKSGRGSIKMR 246 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRI 311 A W E + IV+T +P+Q ++L+E+IA + AK++P++ED+RDES + RI Sbjct: 247 AVWHKE-----NGDIVITALPHQTSGAKLLEQIASQMRAKKLPMVEDLRDESDHENPTRI 301 Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371 V+ P++ +D + LM +F +D+E F N+N+L + PQV L I+ EWL +RR Sbjct: 302 VIVPRSNRIDCEQLMNHLFASTDLEKSFRANLNMLGLDGRPQVKGLVQIIAEWLEYRRTT 361 Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431 + RR +R+ + R+ IL+GLL AYLNIDE+I IIR+ED PK ++SRF L+ Q DAI Sbjct: 362 VRRRLQYRLDKVIARLHILEGLLAAYLNIDEVIEIIRSEDDPKAELMSRFDLSAIQADAI 421 Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491 L ++LR L KLEE +I+ E D L E+E+++ LL S ++ I KEI S + Sbjct: 422 LEIKLRQLAKLEEIKIRGEQDELSKEREQLEKLLGSERRLNTLIK------KEILSDAEK 475 Query: 492 LG-RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDS 550 G RR+ E A KA ++ +I E ITVV+S++GWIR K H VD + L +K GD+ Sbjct: 476 YGDERRSPLVEREEA-KALTERDLIPSEAITVVLSDKGWIRHAKGHEVDPTTLSYKSGDN 534 Query: 551 LKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDS 610 + + L +DG++Y L + +L S R GE I ++L ++ + + Sbjct: 535 YLAHARGKSNQPAIFLGSDGRSYALESHSLPSARSQGEPITGRLNLTPGTNMRQVLMAED 594 Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVAVVGEN 667 L+ S G FI + +++++ + GK L V + + V + D + + Sbjct: 595 EQLWLMASDAGYGFICKSTDMVSKNKSGKALLTVPENAAVLPPQPVDNIDSDEILAITNE 654 Query: 668 RKLLIFSIDQIPEMSRGKG---VRLQSYKDGGISDVICFKICEGL---TWIDSAGRSYNR 721 ++L+F I +P++ +GKG + + S + + + + G + + R Sbjct: 655 GRMLLFPIKDLPQLGKGKGNKIINIPSARAKAREEFLSYLAVIGADTHVTLHAGKRKLCL 714 Query: 722 SENDLLGWLGKRGGVGSLVPKGFPR 746 DL + G+RG GS++P+G R Sbjct: 715 KPADLDNFRGERGRRGSMLPRGLQR 739 >gi|58581619|ref|YP_200635.1| DNA topoisomerase IV subunit A [Xanthomonas oryzae pv. oryzae KACC10331] gi|58426213|gb|AAW75250.1| topoisomerase IV subunit A [Xanthomonas oryzae pv. oryzae KACC10331] Length = 747 Score = 509 bits (1312), Expect = e-142, Method: Compositional matrix adjust. Identities = 276/735 (37%), Positives = 432/735 (58%), Gaps = 21/735 (2%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 + LR E YL Y++ + +RA+P L DG KPV RRII AMSE+GL+ A KKSAR V Sbjct: 15 LPLREYAERAYLDYSMYVVLDRALPFLGDGLKPVQRRIIFAMSELGLNAAAKPKKSARTV 74 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQ 138 G+VIGK HPHGD + Y++LV +AQPF RYPLI GQGNFG+ D S AA RYTE+++T Sbjct: 75 GDVIGKYHPHGDSACYEALVLMAQPFSYRYPLIEGQGNFGSTDDPKSFAAMRYTESKLTP 134 Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198 +AE++L + + D+ ++ EP P++ P+LL NGT+GIAVGMAT +P HN+ E Sbjct: 135 IAEVLLGELAQGTTDWAPNFDGTLEEPTWLPARLPHLLLNGTTGIAVGMATDVPPHNLNE 194 Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258 I A L L+DNP+ ++ +L E+++GPD+PT I+ + Y G G R RA + Sbjct: 195 IVSALLRLLDNPDATVAELCEHVLGPDYPTTAEIITPAADLRAIYETGHGSVRARATYKK 254 Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES--AEDVRIVLFPK 316 E IV+ +PYQV S++IE+IA+ + AK++P LEDIRDES VR+VL P+ Sbjct: 255 EHAN-----IVIDALPYQVSPSKVIEQIAQQMRAKKLPWLEDIRDESDHTSPVRVVLVPR 309 Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376 + +D + LM +F+ +D+E + N+NV+ + PQV L +L EWL R + + RR Sbjct: 310 SNRVDAEQLMGHLFVTTDLERSYRCNLNVIGLDGRPQVKNLRQLLSEWLTFRSDTVTRRL 369 Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRL 436 R+Q ++RR+ +L+GLLIA+LN+DE+I I+R+ED+PKPV++SRF+L+E Q + IL +L Sbjct: 370 DHRLQKVERRLHLLEGLLIAFLNLDEVIRIVRSEDEPKPVLISRFALSEEQAEYILETKL 429 Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496 R L +LEE +I+ E + L E+ +I ++L S K + ++ + E+ + + G R Sbjct: 430 RQLARLEEMKIRGEQEALAKERAQIMAILES-KTKLKKLIKD-----ELTADAKKFGDAR 483 Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALH 556 + A +A + M+ EP+TVV+S +GW+R+ K H VD + + +++GD L A+ Sbjct: 484 LSPLVQRGAAQAIDETEMVASEPMTVVLSEKGWVRAAKGHEVDPAGMSYRDGDGLLAAVR 543 Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLV 616 + +T ++ L ++G+AY+ L S RG+GE + D+ + ++ Sbjct: 544 SRSTHQVAFLDSEGRAYSTAVHTLPSARGNGEPLTGRFSPASGAAFQVMASADNATRFVL 603 Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---DHVAVVGENRKLLIF 673 SS G F+ + + GK L +++ + +V+ D + V LL Sbjct: 604 ASSHGYGFVTRFENLTGRNKAGKAMLNLTTGSHVLTPAQVSNPQTDRIVAVTSAGNLLAV 663 Query: 674 SIDQIPEMSRGKG---VRLQSYKDGGISDVICFKICEGLT-WIDSAGRSYNRSENDLLGW 729 ++PE+ +GKG + + K G V + G T + S R+ + S DL + Sbjct: 664 PATEVPELDKGKGNKIIEIPKAKLGTERVVAVVAVAPGNTLLVRSGARTMSLSFKDLDTY 723 Query: 730 LGKRGGVGSLVPKGF 744 +G R G+L+P+G+ Sbjct: 724 VGARASRGALLPRGW 738 >gi|296113890|ref|YP_003627828.1| DNA topoisomerase IV subunit A [Moraxella catarrhalis RH4] gi|295921584|gb|ADG61935.1| DNA topoisomerase IV subunit A [Moraxella catarrhalis RH4] gi|326561441|gb|EGE11791.1| DNA topoisomerase IV subunit A [Moraxella catarrhalis 46P47B1] Length = 745 Score = 509 bits (1312), Expect = e-142, Method: Compositional matrix adjust. Identities = 274/727 (37%), Positives = 445/727 (61%), Gaps = 19/727 (2%) Query: 27 EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86 E YL YA+ I +RA+P + DG KPV RRI++AMSE+GL A KKSAR VG+V+GK Sbjct: 15 EYAYLNYAMYVIMDRALPHIADGLKPVQRRIVYAMSELGLKHTAKPKKSARTVGDVLGKY 74 Query: 87 HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQVAELILQ 145 HPHGD + Y+++V +AQPF RYPLI+GQGN+G+ D S AA RYTEA M++ A+++L Sbjct: 75 HPHGDSACYEAMVLMAQPFSYRYPLITGQGNWGSPDDPKSFAAMRYTEANMSRYADILLG 134 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 +++ VD++D ++ SEPV P++ PN+L NGT+GIAVGMAT IP HN+ E+ + + Sbjct: 135 EIEQGTVDWQDNFDGSLSEPVTLPARLPNILLNGTTGIAVGMATDIPPHNLHEVVKVCIR 194 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265 L+ NPE+S ++L++ + PD PT I+ + ++ Y G+G +++RA + + + + Sbjct: 195 LLKNPELSTKQLVQTLPAPDLPTTAEIITPKNDMIAMYETGKGSYKMRATYHTDP--KQN 252 Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES--AEDVRIVLFPKNRSLDPD 323 +++ +PYQV ++++E+IA+L++ K++P + +IRDES RIV+ K L+ D Sbjct: 253 HLVIINALPYQVSGNKVVEQIAKLMMDKKLPWVTEIRDESDNLNPCRIVIELKKSKLNID 312 Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383 +M +F +D+ET + +NMN++ + P+V L IL EWL+ R+ V+ RR +R+ I Sbjct: 313 KIMSHLFANTDLETSYRVNMNMIGINGKPEVKNLKSILLEWLSVRKSVVIRRLQYRLDKI 372 Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLE 443 + R+ IL GLLIAYLNIDEII IIR + PK +++RF LT+ Q +AIL+++LR L KLE Sbjct: 373 NERLHILAGLLIAYLNIDEIIDIIRTAEDPKIELMTRFGLTQTQANAILDIKLRQLAKLE 432 Query: 444 EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVS 503 E ++ +E D L AE+ I LN+ + + + E+ + + G R + V Sbjct: 433 EIELTAEHDRLEAERLLISEQLNNPEMLTKLL------IDELTADAKTHGDARRSPV-VQ 485 Query: 504 RADKATLQQA-MIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDR 562 RA+ ++L+ +I EPIT ++S GWIR+ K H D + ++++ GD+ +T+R Sbjct: 486 RAESSSLKAVDLIASEPITAILSQAGWIRAAKGHHADPAEMNYRTGDAYLTHALGKSTER 545 Query: 563 ILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST---CKLLVVSS 619 ++L+ G++Y L + +L S R G+ I L++L I Y+ T +L+ SS Sbjct: 546 LILVDNTGRSYGLDSIHLPSARTQGDPITSLLNLPAGAKIDQLLFYNQTNGSPNVLMASS 605 Query: 620 KGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQI 678 G FI + + + + GK+ + ++ + +VV D VAV N LLIF+ D++ Sbjct: 606 LGYGFINQLANLDTAQKSGKSSINLADGVLLPIVVMQDDDSLVAVSLSNGNLLIFASDEL 665 Query: 679 PEMSRGKGVRLQSYKDG-GISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVG 737 P++++GKG +L + K G I+ + + L I + R+ + ND+ ++ R G Sbjct: 666 PKLAKGKGNKLANLKAGETITAITALSDTDALV-ITAGKRTLTLNPNDIANYIAHRANRG 724 Query: 738 SLVPKGF 744 + +PKGF Sbjct: 725 NPLPKGF 731 >gi|260551113|ref|ZP_05825317.1| DNA topoisomerase IV [Acinetobacter sp. RUH2624] gi|260405880|gb|EEW99368.1| DNA topoisomerase IV [Acinetobacter sp. RUH2624] Length = 739 Score = 509 bits (1312), Expect = e-142, Method: Compositional matrix adjust. Identities = 278/732 (37%), Positives = 439/732 (59%), Gaps = 21/732 (2%) Query: 27 EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86 E+ YL YA+ I +RA+P + DG KPV RRI++AMSE+GL KKSAR VG+V+GK Sbjct: 19 EQAYLNYAMYVIMDRALPHISDGLKPVQRRIVYAMSELGLKSSGKPKKSARTVGDVLGKY 78 Query: 87 HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQVAELILQ 145 HPHGD + Y+++V +AQPF RYPLI GQGN+G+ D S AA RYTEA+++ +EL+L Sbjct: 79 HPHGDSACYEAMVLMAQPFSYRYPLIEGQGNWGSPDDPKSFAAMRYTEAKLSAYSELLLS 138 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 + + +++D ++ EP+ P++ PN+L NGT+GIAVGMAT IP HN++E+ + +A Sbjct: 139 ELGQGTSEWQDNFDGSLKEPITLPARVPNILLNGTTGIAVGMATDIPPHNLREVVKGTIA 198 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265 LI NP+ S EKL EYI PD PT I+ E +++ GRG +R+RA + VE+ Sbjct: 199 LIRNPQTSDEKLAEYIPAPDLPTKAEIITPPEELLKIQMTGRGSYRMRAVYSVEK----- 253 Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFPKNRSLDPD 323 IV+TE+PYQV S++I +IA+ + AK++PL+ D+RDES + R+V+ ++ +D + Sbjct: 254 HEIVITELPYQVSGSKVITQIADQMQAKKLPLVVDVRDESDHENPTRLVIVLRSNRIDAE 313 Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383 +M +F +D+E+ + +N+N++ PQV + IL EW+ R++ + RR + + I Sbjct: 314 AVMSHLFATTDLESSYRVNLNMIGEDGRPQVKSIRRILLEWIEIRKKTVTRRLQYHLNRI 373 Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLE 443 ++R+ IL GLLIAYL+ID +I IIR ED+PKPV++ F++ E Q +AIL L+LR L KLE Sbjct: 374 EKRLHILAGLLIAYLDIDTVIRIIREEDQPKPVLMEHFNIDEIQAEAILELKLRHLAKLE 433 Query: 444 EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVS 503 E +I+ E D L A+ I L + + N I E++E + F RR+ V+ Sbjct: 434 EMEIRHEQDELSAKAAIIREQLENPESLKNLIIGELKEDAKKFGDE-----RRSPI--VA 486 Query: 504 RADKATL-QQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDR 562 RA+ + +Q ++ E +TVV+S GW+R+ K VD L+++ GD T R Sbjct: 487 RAEAVQIKEQDLMPAETVTVVLSEAGWVRAAKGADVDAENLNYRAGDQYLSHAVGKTNQR 546 Query: 563 ILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGN 622 + L G++Y LP NL S RG G+ + + + ++ D +L+ SS G Sbjct: 547 VYFLDETGRSYALPISNLPSARGLGDPLSSKLSPASGVSFIQVYLDDDESELIAASSAGY 606 Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEK-MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEM 681 F + ++ + GKTFL V + K + L+ H+AV+ +LLI + ++P + Sbjct: 607 GFKTQTKQLDTTAKAGKTFLTVPEKSKALPLISAQNMTHLAVLSSAGRLLILDLAELPNL 666 Query: 682 SRGKGVRL-QSYKDGGISDVICFKICEGLTWIDSAGRSYNRSE-NDLLGWLGKRGGVGSL 739 ++GKG +L Q I + + E + + AG+ + + + +DL ++GKR G L Sbjct: 667 NKGKGNKLIQLEAKEQILSMTTLNLDEIIQVV--AGQQHLKLKGDDLQKYMGKRASKGQL 724 Query: 740 VPKGFPRSGKFL 751 +P+G+ ++ K L Sbjct: 725 LPRGYQKANKLL 736 >gi|296104673|ref|YP_003614819.1| DNA topoisomerase IV subunit A [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295059132|gb|ADF63870.1| DNA topoisomerase IV subunit A [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 752 Score = 509 bits (1311), Expect = e-142, Method: Compositional matrix adjust. Identities = 275/740 (37%), Positives = 444/740 (60%), Gaps = 29/740 (3%) Query: 23 RFALEE----RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78 R AL E YL Y++ I +RA+P + DG KPV RRI++AMSE+GL+ A FKKSAR Sbjct: 7 RLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKFKKSART 66 Query: 79 VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMT 137 VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S AA RYTE+R++ Sbjct: 67 VGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLS 126 Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197 + AE++L + + VD+ ++ EP + P++ PN+L NGT+GIAVGMAT IP HN++ Sbjct: 127 KYAEVLLGELGQGTVDWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLR 186 Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257 E+ +AA+ LI+ P+ S+++LL+ + GPDFPT I+ SR I + Y+ GRG R+RA W Sbjct: 187 EVAKAAITLIEQPKTSLDELLDIVQGPDFPTEAEIITSRAEIRKIYQNGRGSVRMRAVWT 246 Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFP 315 E+ +V+T +P+QV ++++E+IA + K++P+++D+RDES + R+V+ P Sbjct: 247 KED-----GAVVITALPHQVSGAKVLEQIASQMRNKKLPMVDDLRDESDHENPTRLVIVP 301 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 ++ +D + +M +F +D+E + +N+N++ + P V L IL EWL RR+ + RR Sbjct: 302 RSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLTFRRDTVRRR 361 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435 + R++ + +R+ IL+GLL+A+LNIDE+I IIR ED+PKPV++SRF ++E Q +AIL L+ Sbjct: 362 LNHRLEKVLKRLHILEGLLVAFLNIDEVIEIIRTEDEPKPVLMSRFGISETQAEAILELK 421 Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495 LR L KLEE +I+ E + L E++++ ++L S ++ + E++ + F R Sbjct: 422 LRHLAKLEEMKIRGEQNELEKERDQLQAILASERKMNTLLKKELQADADAFGDD-----R 476 Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555 R+ E A KA + M EP+T+V+S GW+RS K H +D L +K GDS K A+ Sbjct: 477 RSPLHEREEA-KAMNEHDMQPSEPVTIVLSQSGWVRSAKGHDIDAPGLSYKAGDSFKAAV 535 Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615 + + + + G++Y + L S RG GE + + L + + KLL Sbjct: 536 KGKSNQPVAFIDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMEADDQKLL 595 Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--KLVVKVTGDHVAVVGENRKLLIF 673 + S G FI +++++ R GK + + + LVV+ D + + ++L+F Sbjct: 596 LASDAGYGFICTFNDLVSRNRAGKAMISLPDNAHVMPPLVVENESDMLLAITSAGRMLMF 655 Query: 674 SIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDL 726 + +PE+S+GKG ++ + + G++ + LT I R +L Sbjct: 656 PVSDLPELSKGKGNKIINIPSAEAAKGEDGLAHLFILPPQSTLT-IHVGKRKIKLRPEEL 714 Query: 727 LGWLGKRGGVGSLVPKGFPR 746 +G+RG GSL+ +G R Sbjct: 715 QKVVGERGRRGSLM-RGLQR 733 >gi|322506403|gb|ADX01857.1| parC [Acinetobacter baumannii 1656-2] Length = 739 Score = 509 bits (1311), Expect = e-142, Method: Compositional matrix adjust. Identities = 278/732 (37%), Positives = 439/732 (59%), Gaps = 21/732 (2%) Query: 27 EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86 E+ YL YA+ I +RA+P + DG KPV RRI++AMSE+GL KKSAR VG+V+GK Sbjct: 19 EQAYLNYAMYVIMDRALPHISDGLKPVQRRIVYAMSELGLKSSGKPKKSARTVGDVLGKY 78 Query: 87 HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQVAELILQ 145 HPHGD + Y ++V +AQPF RYPLI GQGN+G+ D S AA RYTEA+++ +EL+L Sbjct: 79 HPHGDSACYKAMVLMAQPFSYRYPLIEGQGNWGSPDDPKSFAAMRYTEAKLSAYSELLLS 138 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 + + +++D ++ EP+ P++ PN+L NGT+GIAVGMAT IP HN++E+ + +A Sbjct: 139 ELGQGTSEWQDNFDGSLKEPITLPARVPNILLNGTTGIAVGMATDIPPHNLREVVKGTIA 198 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265 LI NP+ S EKL EYI PD PT I+ E +++ GRG +R+RA + +E+ Sbjct: 199 LIRNPQTSDEKLAEYIPAPDLPTKAEIITPPEELLKIQTTGRGSYRMRAVYTIEKNE--- 255 Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFPKNRSLDPD 323 IV+TE+PYQV S++I +IA+ + AK++PL+ D+RDES + R+V+ ++ +D + Sbjct: 256 --IVITELPYQVSGSKVITQIADQMQAKKLPLVVDVRDESDHENPTRLVIVLRSNRIDAE 313 Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383 +M +F +D+E+ + +N+N++ PQV + IL EW+ R++ + RR + + I Sbjct: 314 AVMSHLFATTDLESSYRVNLNMIGEDGRPQVKSIRRILLEWIEIRKKTVTRRLQYHLNRI 373 Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLE 443 ++R+ IL GLLIAYL+ID +I IIR ED+PKPV++ F++ E Q +AIL L+LR L KLE Sbjct: 374 EKRLHILAGLLIAYLDIDTVIRIIREEDQPKPVLMEHFNIDEIQAEAILELKLRHLAKLE 433 Query: 444 EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVS 503 E +I+ E D L A+ I L + + N I E++E + F RR+ V+ Sbjct: 434 EMEIRHEQDELSAKAAIIREQLENPESLKNLIIGELKEDAKKFGDE-----RRSPI--VA 486 Query: 504 RADKATL-QQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDR 562 RA+ + +Q ++ E +TVV+S GW+R+ K VD L+++ GD T R Sbjct: 487 RAEAVQIKEQDLMPAETVTVVLSEAGWVRAAKGADVDAENLNYRAGDQYLSHAVGKTNQR 546 Query: 563 ILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGN 622 + L G++Y LP NL S RG G+ + + + ++ D +L+ SS G Sbjct: 547 VYFLDETGRSYALPISNLPSARGLGDPLSSKLSPASGVSFIQVYLDDDESELIAASSAGY 606 Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEK-MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEM 681 F + ++ N + GKTFL V + K + L+ H+AV+ +LLI + ++P + Sbjct: 607 GFKTQTKQLDTNAKAGKTFLTVPDKAKALPLISAQNMTHLAVLSSAGRLLILDLAELPNL 666 Query: 682 SRGKGVRL-QSYKDGGISDVICFKICEGLTWIDSAGRSYNRSE-NDLLGWLGKRGGVGSL 739 ++GKG +L Q I + + E + + AG+ + + + +DL ++GKR G L Sbjct: 667 NKGKGNKLIQLEGKEQILSMTTLNLDEIIQVV--AGQQHLKLKGDDLQKYMGKRASKGQL 724 Query: 740 VPKGFPRSGKFL 751 +P+G+ ++ K L Sbjct: 725 LPRGYQKANKLL 736 >gi|68249954|ref|YP_249066.1| DNA topoisomerase IV subunit A [Haemophilus influenzae 86-028NP] gi|68058153|gb|AAX88406.1| topoisomerase IV subunit A [Haemophilus influenzae 86-028NP] Length = 747 Score = 509 bits (1311), Expect = e-142, Method: Compositional matrix adjust. Identities = 278/743 (37%), Positives = 437/743 (58%), Gaps = 26/743 (3%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 E ++ + LR E+ YL Y++ I +RA+P + DG KPV RRI++AMSE+GL+ A +KK Sbjct: 7 EGIEQMPLRTFTEKAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKYKK 66 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTE 133 SAR VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S AA RYTE Sbjct: 67 SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 126 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 +R+++++E++L + + VD++ ++ +EP P++ P++L NGT+GIAVGMAT IP Sbjct: 127 SRLSKISEILLSELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATDIPP 186 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ EI +AA+ L+DNP+ ++ +LE + GPDFPT I+ + I + Y GRG ++R Sbjct: 187 HNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRGSIKMR 246 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRI 311 A W E+ I+++ +P+Q S++I +IAE + AK++P+LEDIRDE+ + +RI Sbjct: 247 ATWKQED-----GEIIISALPHQSSPSKVIAQIAEQMTAKKLPMLEDIRDEADHENPIRI 301 Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371 VL P++ +D D LM +F +D+E + +NMN++ + P V L IL EWL RR Sbjct: 302 VLVPRSNRVDTDALMAHLFATTDLEKNYRVNMNMIGLDHKPAVKGLLEILNEWLDFRRTT 361 Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431 + RR +R+ + R+ IL+GL+IA+LNIDE+I IIR+ED PK ++ RF+L++ Q DAI Sbjct: 362 VTRRLQYRLDKVLSRLHILEGLMIAFLNIDEVIEIIRHEDDPKAELMVRFNLSDEQADAI 421 Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491 LNLRLR L KLEE Q+K+E D L E+ ++++L S ++ I EI+E + ++ Sbjct: 422 LNLRLRHLAKLEENQLKAEQDELEKERLNLEAILGSERRLNTLIKKEIQEDAKKYASP-- 479 Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551 R + E A K + M EP+TV++S GW+R K H +D +L +K GDS Sbjct: 480 ---RMSQLVEREEA-KMISESDMTPAEPVTVILSEMGWVRCAKGHDIDPKSLSYKAGDSY 535 Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611 + ++ + + G++Y L +L S R GE + ++L I + Sbjct: 536 LAHACGKSNQAVVFIDSTGRSYALDPLSLPSARSQGEPLTGKLNLPTGATIEYVVMASEQ 595 Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVAVVGENR 668 +LL+ S G FI + ++IA + GK + + K+ K ++ T VA+ R Sbjct: 596 QELLMASDAGYGFICKFEDLIARNKAGKALISLPENAKVLKPKTLINSTALVVAITSAGR 655 Query: 669 KLLIFSIDQIPEMSRGKGVRLQSYKDGGISD-------VICFKICEGLTWIDSAGRSYNR 721 +LIF +P +S+GKG ++ + D ++ L + S R Sbjct: 656 -MLIFPAQDLPVLSKGKGNKMITIPAANAKDRSELLTKLLLISDQASLEFY-SGKRKIVL 713 Query: 722 SENDLLGWLGKRGGVGSLVPKGF 744 DL + +RG GS +P+G Sbjct: 714 KPEDLQKFRAERGRKGSTLPRGL 736 >gi|213155597|ref|YP_002317642.1| DNA topoisomerase IV, A subunit [Acinetobacter baumannii AB0057] gi|301346045|ref|ZP_07226786.1| DNA topoisomerase IV subunit A [Acinetobacter baumannii AB056] gi|301596192|ref|ZP_07241200.1| DNA topoisomerase IV subunit A [Acinetobacter baumannii AB059] gi|332874996|ref|ZP_08442843.1| DNA topoisomerase IV, A subunit [Acinetobacter baumannii 6014059] gi|213054757|gb|ACJ39659.1| DNA topoisomerase IV, A subunit [Acinetobacter baumannii AB0057] gi|323516270|gb|ADX90651.1| DNA topoisomerase IV subunit A [Acinetobacter baumannii TCDC-AB0715] gi|332736806|gb|EGJ67786.1| DNA topoisomerase IV, A subunit [Acinetobacter baumannii 6014059] Length = 739 Score = 509 bits (1311), Expect = e-142, Method: Compositional matrix adjust. Identities = 278/732 (37%), Positives = 440/732 (60%), Gaps = 21/732 (2%) Query: 27 EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86 E+ YL YA+ I +RA+P + DG KPV RRI++AMSE+GL KKSAR VG+V+GK Sbjct: 19 EQAYLNYAMYVIMDRALPHISDGLKPVQRRIVYAMSELGLKSSGKPKKSARTVGDVLGKY 78 Query: 87 HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQVAELILQ 145 HPHGD + Y+++V +AQPF RYPLI GQGN+G+ D S AA RYTEA+++ +EL+L Sbjct: 79 HPHGDLACYEAMVLMAQPFSYRYPLIEGQGNWGSPDDPKSFAAMRYTEAKLSAYSELLLS 138 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 + + +++D ++ EP+ P++ PN+L NGT+GIAVGMAT IP HN++E+ + +A Sbjct: 139 ELGQGTSEWQDNFDGSLKEPITLPARVPNILLNGTTGIAVGMATDIPPHNLREVVKGTIA 198 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265 LI NP+ S EKL EYI PD PT I+ E +++ GRG +R+RA + +E+ Sbjct: 199 LIRNPQTSDEKLAEYIPAPDLPTKAEIITPPEELLKIQTTGRGSYRMRAVYTIEKNE--- 255 Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFPKNRSLDPD 323 IV+TE+PYQV S++I +IA+ + AK++PL+ D+RDES + R+V+ ++ +D + Sbjct: 256 --IVITELPYQVSGSKVITQIADQMQAKKLPLVVDVRDESDHENPTRLVIVLRSNRIDAE 313 Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383 +M +F +D+E+ + +N+N++ PQV + IL EW+ R++ + RR + + I Sbjct: 314 AVMSHLFATTDLESSYRVNLNMIGEDGRPQVKSIRRILLEWIEIRKKTVTRRLQYHLNRI 373 Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLE 443 ++R+ IL GLLIAYL+ID +I IIR ED+PKPV++ F++ E Q +AIL L+LR L KLE Sbjct: 374 EKRLHILAGLLIAYLDIDTVIRIIREEDQPKPVLMEHFNIDEIQAEAILELKLRHLAKLE 433 Query: 444 EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVS 503 E +I+ E D L A+ I L + + N I E++E + F RR+ V+ Sbjct: 434 EMEIRHEQDELSAKAAIIREQLENPESLKNLIIGELKEDAKKFGDE-----RRSPI--VA 486 Query: 504 RADKATL-QQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDR 562 RA+ + +Q ++ E +TVV+S GW+R+ K VD L+++ GD T R Sbjct: 487 RAEAVQIKEQDLMPAETVTVVLSEAGWVRAAKGADVDAENLNYRAGDQYLSHAVGKTNQR 546 Query: 563 ILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGN 622 + L G++Y LP NL S RG G+ + + + ++ D +L+ SS G Sbjct: 547 VYFLDETGRSYALPISNLPSARGLGDPLSSKLSPASGVSFIQVYLDDDESELIAASSAGY 606 Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEK-MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEM 681 F + ++ N + GKTFL V + K + L+ H+AV+ +LLI + ++P + Sbjct: 607 GFKTQTKQLDTNAKAGKTFLTVPDKAKALPLISAQNMTHLAVLSSAGRLLILDLAELPNL 666 Query: 682 SRGKGVRL-QSYKDGGISDVICFKICEGLTWIDSAGRSYNRSE-NDLLGWLGKRGGVGSL 739 ++GKG +L Q I + + E + + AG+ + + + +DL ++GKR G L Sbjct: 667 NKGKGNKLIQLEGKEQILSMTTLNLDEIIQVV--AGQQHLKLKGDDLQKYMGKRASKGQL 724 Query: 740 VPKGFPRSGKFL 751 +P+G+ ++ K L Sbjct: 725 LPRGYQKANKLL 736 >gi|206579415|ref|YP_002236559.1| DNA topoisomerase IV, A subunit [Klebsiella pneumoniae 342] gi|288933542|ref|YP_003437601.1| DNA topoisomerase IV, subunit alpha [Klebsiella variicola At-22] gi|290511399|ref|ZP_06550768.1| DNA topoisomerase IV, A subunit [Klebsiella sp. 1_1_55] gi|206568473|gb|ACI10249.1| DNA topoisomerase IV, A subunit [Klebsiella pneumoniae 342] gi|288888271|gb|ADC56589.1| DNA topoisomerase IV, A subunit [Klebsiella variicola At-22] gi|289776392|gb|EFD84391.1| DNA topoisomerase IV, A subunit [Klebsiella sp. 1_1_55] Length = 752 Score = 509 bits (1310), Expect = e-142, Method: Compositional matrix adjust. Identities = 272/734 (37%), Positives = 439/734 (59%), Gaps = 28/734 (3%) Query: 23 RFALEE----RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78 R AL E YL Y++ I +RA+P + DG KPV RRI++AMSE+GL+ A FKKSAR Sbjct: 7 RLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSART 66 Query: 79 VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMT 137 VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S AA RYTE+R++ Sbjct: 67 VGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLS 126 Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197 + AEL+L + + VD+ ++ EP + P++ PN+L NGT+GIAVGMAT IP HN++ Sbjct: 127 KYAELLLSELGQGTVDWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLR 186 Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257 E+ +AA+ LI+ P+ ++++LL+ + GPDFPT I+ SR I + Y+ GRG R+RA W Sbjct: 187 EVAKAAITLIEQPKTTLDELLDIVQGPDFPTEAEIITSRAEIRKIYQNGRGSVRMRAVWS 246 Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFP 315 E+ +V++ +P+QV ++++E+IA + K++P+++D+RDES + R+V+ P Sbjct: 247 KED-----GAVVISALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVP 301 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 ++ +D + +M +F +D+E + +N+N++ + P V L IL EWL RR+ + RR Sbjct: 302 RSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRR 361 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435 + R++ + +R+ IL+GLL+A+LNIDE+I IIR ED+PKP ++SRF ++E Q +AIL L+ Sbjct: 362 LNHRLEKVLKRLHILEGLLVAFLNIDEVIEIIRTEDEPKPALMSRFGISETQAEAILELK 421 Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495 LR L KLEE +I+ E D L E++++ ++L S ++ N + E++ + F R Sbjct: 422 LRHLAKLEEMKIRGEQDELEKERDQLQAILASERKMNNLLKKELQADADAFGDE-----R 476 Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555 R+ E A KA + M EP+T+V+S GW+RS K H +D L +K GDS K + Sbjct: 477 RSPLHEREEA-KAMSEHDMQPSEPVTIVLSQMGWVRSAKGHDIDAQGLSYKAGDSWKASA 535 Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615 + ++ + T G++Y + L S RG GE + + L + + KLL Sbjct: 536 KGKSNQPVVFIDTTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVEHMLMESDDRKLL 595 Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--KLVVKVTGDHVAVVGENRKLLIF 673 + S G F+ ++++A R GK + + + LV++ D + + ++L+F Sbjct: 596 MASDAGYGFVCTFNDLVARNRAGKALITLPDNAHVMPPLVIEDESDMLLAITAAGRMLMF 655 Query: 674 SIDQIPEMSRGKGVRLQSYKDG-------GISDVICFKICEGLTWIDSAGRSYNRSENDL 726 + +P++S+GKG ++ S G++ + LT I R +L Sbjct: 656 PVSDLPQLSKGKGNKIISIPAAEAAAGQDGLAHLFILPPQSTLT-IHVGKRKIKLRPEEL 714 Query: 727 LGWLGKRGGVGSLV 740 G+RG GSL+ Sbjct: 715 QKVTGERGRRGSLM 728 >gi|221199540|ref|ZP_03572584.1| DNA topoisomerase IV, A subunit [Burkholderia multivorans CGD2M] gi|221205560|ref|ZP_03578575.1| DNA topoisomerase IV, A subunit [Burkholderia multivorans CGD2] gi|221174398|gb|EEE06830.1| DNA topoisomerase IV, A subunit [Burkholderia multivorans CGD2] gi|221180825|gb|EEE13228.1| DNA topoisomerase IV, A subunit [Burkholderia multivorans CGD2M] Length = 773 Score = 509 bits (1310), Expect = e-142, Method: Compositional matrix adjust. Identities = 283/699 (40%), Positives = 421/699 (60%), Gaps = 32/699 (4%) Query: 19 AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78 A++L E+ YL+YA+S +K RA+PD+ DG KPV RRI++AM+EMGL A KSAR+ Sbjct: 19 ALTLGNYAEQAYLSYAVSVVKSRALPDVCDGQKPVQRRILYAMNEMGLGPDAKPVKSARV 78 Query: 79 VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138 VG+V+GK HPHGDQS YD+LVRLAQ F RYPLI GQGNFG+ DGD AAA RYTEAR+T Sbjct: 79 VGDVLGKYHPHGDQSAYDALVRLAQDFSLRYPLIDGQGNFGSRDGDGAAAMRYTEARLTP 138 Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198 +++L+L +D+ VDF Y+ EP PS+ P +L NG SGIAVG+AT IPSHN++E Sbjct: 139 ISKLLLDEIDQGTVDFMPNYDGSFEEPKTLPSRMPFVLLNGASGIAVGLATEIPSHNLRE 198 Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258 + AA+ALI NP+++ E+L+ I GPDFP GG I+ S I +Y GRG +VRARW + Sbjct: 199 VAAAAVALIRNPKLTHEELMTLIPGPDFPGGGQIISSDAEIASAYETGRGSLKVRARWKI 258 Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAK------------------RIPLLED 300 E++ RG W +VVTE+P +++E+I EL K + LL+ Sbjct: 259 EDLARGQWQLVVTELPPNTSCQKVLEEIEELTNPKLKLGKKTLTPEQLNTKKAMLDLLDA 318 Query: 301 IRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLD 358 +RDES ++ VR+V PK+R++D + S+ + +E+ LN+ ++ P L Sbjct: 319 VRDESGKEAAVRLVFEPKSRTIDQTEFVNSLLAHTSLESNATLNLVMIGADGRPGQKGLL 378 Query: 359 GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV 418 IL EW+ R+ + RR R+ +D R+ IL+G +I +LN+DE+I IIR D+PK ++ Sbjct: 379 TILDEWVKFRQMTMTRRCRHRLGKVDDRIHILEGRMIVFLNLDEVIRIIRESDEPKAALM 438 Query: 419 SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE 478 S F LT+ Q + IL +RLR L +LE+ +I+ EL++L EK K++ LL N A + Sbjct: 439 SAFGLTDRQAEDILEIRLRQLARLEKIKIEKELESLRDEKAKLEELLA------NDSAMK 492 Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV 538 +KEI + + G R T + + +AT +A + EP+TVV+S +GW+R+LK H + Sbjct: 493 RLMIKEIEADAKQYGDDRRTL--IQQEKRATF-EAKVVDEPVTVVVSQKGWVRALKGHGL 549 Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNH 598 D + FK GDSL A T DR++ + G+ Y++ L GRG G + LI+L Sbjct: 550 DPAGFSFKAGDSLYAAFQCRTPDRLIAWGSSGRVYSVDVSVLPGGRGDGVPVTSLIELES 609 Query: 599 NQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV--SSEEKMKLVVKV 656 ++ + + LL+ SS G FI + ++++ + GK+F+ + + + V Sbjct: 610 GSHLMHYYAASADQPLLLASSNGFGFIAKVGDMVSRVKAGKSFMTIDPGAVPLAPMPVLP 669 Query: 657 TGDHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKD 694 VA + +LL+F ID++ +S G+GV L + D Sbjct: 670 NATQVACLSSGGRLLVFGIDEMKTLSGGGRGVTLMALDD 708 >gi|260599287|ref|YP_003211858.1| DNA topoisomerase IV subunit A [Cronobacter turicensis z3032] gi|260218464|emb|CBA33605.1| DNA topoisomerase 4 subunit A [Cronobacter turicensis z3032] Length = 756 Score = 509 bits (1310), Expect = e-142, Method: Compositional matrix adjust. Identities = 260/685 (37%), Positives = 428/685 (62%), Gaps = 16/685 (2%) Query: 12 LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71 L + + ++L E YL Y++ I +RA+P + DG KPV RRI++AMSE+GL+ A Sbjct: 4 LTHDGAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAK 63 Query: 72 FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYR 130 FKKSAR VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S AA R Sbjct: 64 FKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMR 123 Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190 YTE+R+++ AE++L + + VD+ ++ +EP + P++ PN+L NGT+GIAVGMAT Sbjct: 124 YTESRLSKYAEVLLGELGQGTVDYVPNFDGTLNEPKMLPARLPNILLNGTTGIAVGMATD 183 Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250 IP HN++E+ +AA++LID+P+ ++++LL+ + GPD+PT I+ SR I + Y+ GRG Sbjct: 184 IPPHNLREVAKAAVSLIDSPKTTLDELLDIVQGPDYPTEAEIITSRAEIRKIYQSGRGSV 243 Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-- 308 R+RA W E+ +V++ +P+QV +R++E+IA + AK++P+++D+RDES + Sbjct: 244 RMRAVWKKED-----GAVVISALPHQVSGARVLEQIASQMRAKKLPMVDDLRDESDHENP 298 Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368 R+V+ P++ +D D +M +F +D+E + +N+N++ + P V L IL EWL R Sbjct: 299 TRLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEWLVFR 358 Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQV 428 R+ + RR ++R+ + RR+ IL+GLL+A+LNIDE+I IIR ED+PKPV++SRF ++E Q Sbjct: 359 RDTVRRRLNYRLDKVMRRLHILEGLLVAFLNIDEVIEIIRGEDEPKPVLMSRFGISETQA 418 Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488 +AIL L+LR L KLEE +I+ E +L E++++ +L S ++ + EI+ + + Sbjct: 419 EAILELKLRHLAKLEEMKIRGEQSDLEKERDQLQGILASERKMNTLLKKEIQADADAYGD 478 Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548 RR+ E A KA + M+ EP+T+V+S GW+RS K H +D AL +K G Sbjct: 479 D-----RRSPLHEREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAKALSYKAG 532 Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608 D+ + T ++ + + G++Y L +L S RG GE + + L + + Sbjct: 533 DNWLSSAKGKTNQPVVFIDSTGRSYALDPVSLPSARGQGEPLTGKLTLPPGAVVEHMLMT 592 Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--KLVVKVTGDHVAVVGE 666 KLL+ S G F+ ++++A R GK + + + L ++ D + + Sbjct: 593 GEDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVLKPLEIEHDDDMLLAITA 652 Query: 667 NRKLLIFSIDQIPEMSRGKGVRLQS 691 ++L+F + +P++S+GKG ++ S Sbjct: 653 AGRMLMFPVADLPQLSKGKGNKIIS 677 >gi|254251765|ref|ZP_04945083.1| Type IIA topoisomerase [Burkholderia dolosa AUO158] gi|124894374|gb|EAY68254.1| Type IIA topoisomerase [Burkholderia dolosa AUO158] Length = 773 Score = 509 bits (1310), Expect = e-142, Method: Compositional matrix adjust. Identities = 283/699 (40%), Positives = 419/699 (59%), Gaps = 32/699 (4%) Query: 19 AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78 A++L E+ YL+YA+S +K RA+PD+ DG KPV RRI++AM+EMGL A KSAR+ Sbjct: 19 ALTLGNYAEQAYLSYAVSVVKSRALPDVCDGQKPVQRRILYAMNEMGLGPDAKPVKSARV 78 Query: 79 VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138 VG+V+GK HPHGDQS YD+LVRLAQ F RYPLI GQGNFG+ DGD AAA RYTEAR+T Sbjct: 79 VGDVLGKYHPHGDQSAYDALVRLAQDFSLRYPLIDGQGNFGSRDGDGAAAMRYTEARLTP 138 Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198 +++L+L +D+ VDF Y+ EP PS+ P +L NG SGIAVG+AT IPSHN++E Sbjct: 139 ISKLLLDEIDQGTVDFMPNYDGSFEEPKTLPSRMPFVLLNGASGIAVGLATEIPSHNLRE 198 Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258 + AA+ALI NP+++ +L+ I GPDFP GG I+ S I +Y GRG +VRARW + Sbjct: 199 VAAAAVALIRNPKLTHAELMNLIPGPDFPGGGQIISSDAEIAAAYESGRGSLKVRARWKI 258 Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAK------------------RIPLLED 300 E++ RG W +VVTE+P +++E+I EL K + LL+ Sbjct: 259 EDLARGQWQLVVTELPPNTSCQKVLEEIEELTNPKLKLGKKTLTPEQLNTKKAMLDLLDA 318 Query: 301 IRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLD 358 +RDES ++ VR+V PK+R++D + ++ + +E+ LN+ ++ P L Sbjct: 319 VRDESGKEAAVRLVFEPKSRTIDQTEFVNTLLAYTSLESNATLNLVMIGADGRPGQKGLL 378 Query: 359 GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV 418 IL EW+ R+ + RR R+ +D R+ IL+G +I +LNID++I IIR D+PK ++ Sbjct: 379 AILDEWVKFRQLTMTRRCRHRLAKVDDRIHILEGRMIVFLNIDDVIRIIRESDEPKAALI 438 Query: 419 SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE 478 S F LT+ Q + IL +RLR L +LE+ +I+ ELD L EK K++ LL N A + Sbjct: 439 STFGLTDRQAEDILEIRLRQLARLEKIKIEKELDALRDEKAKLEELLA------NDSAMK 492 Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV 538 +KEI + + G R T + + +AT +A + EP+TVV+S RGW+R+LK H + Sbjct: 493 RLMIKEIEADAKQYGDDRRTLIQQEK--RATF-EAKVVDEPVTVVVSQRGWVRALKGHGL 549 Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNH 598 D +A FK GDSL A T DR++ + G+ Y++ L GRG G + LI+L Sbjct: 550 DPAAFSFKAGDSLYAAFQCRTPDRLIAWGSSGRVYSVDVSVLPGGRGDGVPVTSLIELES 609 Query: 599 NQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV--SSEEKMKLVVKV 656 ++ + + LL+ SS G FI + ++++ + GK F+ + + + V Sbjct: 610 GSHLMHYYAAAADQPLLLASSNGFGFIAKVGDMVSRVKAGKAFMTIDEGAVPLAPMPVLP 669 Query: 657 TGDHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKD 694 VA + +LL+F +D++ +S G+GV L + D Sbjct: 670 NATQVACLSSGGRLLVFGMDEMKTLSGGGRGVTLMALDD 708 >gi|304413715|ref|ZP_07395159.1| dimer of topoisomerase IV subunit A [Candidatus Regiella insecticola LSR1] gi|304283806|gb|EFL92200.1| dimer of topoisomerase IV subunit A [Candidatus Regiella insecticola LSR1] Length = 751 Score = 509 bits (1310), Expect = e-142, Method: Compositional matrix adjust. Identities = 284/757 (37%), Positives = 440/757 (58%), Gaps = 37/757 (4%) Query: 10 NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69 L + V++ +L E YL Y++ I +RA+P + DG KPV RRI++AMSE+GL+ Sbjct: 2 TALTHDVVESQALHTFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNNS 61 Query: 70 AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAA 128 A FKKSAR VG+V+GK HPHGD + Y+++V +AQ F RYPLI GQGN+G D S AA Sbjct: 62 AKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQSFSYRYPLIDGQGNWGAPDDPKSFAA 121 Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188 RYTE+R+++ A+++L + + VD+ ++ EP + P++ PN+L NGT+GIAVGMA Sbjct: 122 MRYTESRLSKYAQILLAELSQGTVDWIANFDGTLQEPKMLPARLPNILLNGTTGIAVGMA 181 Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248 T IP HNVQEI +A + LID P S+++LLEY+ GPDFPT I+ R I + Y+ GRG Sbjct: 182 TDIPPHNVQEIAQALIQLIDKPNASLDELLEYVQGPDFPTDAEIITPRHEIKKIYQTGRG 241 Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308 R+RA W EE +V+T +P+QV ++++E+IA + +K++P++ED+RDES + Sbjct: 242 SIRMRAIWNKEEAN-----VVITALPHQVSGAKVLEQIAGQMRSKKLPMIEDLRDESNHE 296 Query: 309 --VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366 R+V+ P++ +D D +M +F +D+E + +NMN++ + P V L IL EWL Sbjct: 297 NPTRLVIIPRSNRIDLDQVMSHLFATTDLEKSYRINMNMIGLDNRPSVKGLLTILSEWLV 356 Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426 +R + + RR ++R+ + RR+ IL+GLL A+LNID++I IIR ED K V+++ FSL+E+ Sbjct: 357 YRCDTVRRRLNYRLDNVQRRLHILEGLLTAFLNIDKVIDIIRTEDDAKSVLITCFSLSES 416 Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486 Q +AIL L+LR L KLEE +++SE E ++ LL S K +NQ+ +K+ Sbjct: 417 QTEAILELKLRQLAKLEEKKLRSEEAEFQQELAQLQMLLES-KAAFNQL------LKKEI 469 Query: 487 SKSTDLGRRRTTFCE----VSRADKATLQQAMIE-KEPITVVISNRGWIRSLKSHSVDLS 541 T + + C + R D + + I+ EP+TVV+S GW+RS K H VD S Sbjct: 470 QADTAVCHHQQNHCRRSPLIQRDDAKAMNEHDIQPSEPVTVVLSKMGWVRSAKGHDVDPS 529 Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD 601 ++K GD + A + + + + G++Y+L L S RG GE + + Sbjct: 530 GFNYKAGDCFRTAAQGKSNQPAVFIDSTGRSYSLDPLTLPSARGQGEPLTGRFISSTEAV 589 Query: 602 IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DH 660 I + D+ +LL+ S G FI S++I R GK + + S K+ +K+ G D Sbjct: 590 IEYVLMADNDQQLLLSSDAGYGFICHFSDLITKNRAGKALMALPSNAKILPPLKLHGADD 649 Query: 661 VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWI-------- 712 + + ++L+F +P +++GKG ++ S IS + L W+ Sbjct: 650 MLLSITAGRILMFPAADLPRLTKGKGNKIIS-----ISKQERMAGSDNLRWLLRLSVQAS 704 Query: 713 ---DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746 S R +L + KRG GSL+P+G R Sbjct: 705 VTFYSGKRKLTLKPEELKKFSAKRGSKGSLLPRGLTR 741 >gi|21230852|ref|NP_636769.1| DNA topoisomerase IV subunit A [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66769149|ref|YP_243911.1| DNA topoisomerase IV subunit A [Xanthomonas campestris pv. campestris str. 8004] gi|21112458|gb|AAM40693.1| topoisomerase IV subunit A [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66574481|gb|AAY49891.1| topoisomerase IV subunit A [Xanthomonas campestris pv. campestris str. 8004] Length = 747 Score = 508 bits (1309), Expect = e-141, Method: Compositional matrix adjust. Identities = 277/735 (37%), Positives = 431/735 (58%), Gaps = 21/735 (2%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 + LR E YL Y++ + +RA+P L DG KPV RRII AMSE+GL+ A KKSAR V Sbjct: 15 LPLREYAERAYLDYSMYVVLDRALPFLGDGLKPVQRRIIFAMSELGLNAAAKPKKSARTV 74 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQ 138 G+VIGK HPHGD + Y++LV +AQPF RYPLI GQGNFG+ D S AA RYTE+++T Sbjct: 75 GDVIGKYHPHGDSACYEALVLMAQPFSYRYPLIEGQGNFGSTDDPKSFAAMRYTESKLTP 134 Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198 +AE++L + + D+ ++ EP P++ P+LL NGT+GIAVGMAT +P HN+ E Sbjct: 135 IAEVLLGEISQGTTDWAANFDGTLEEPTWLPARLPHLLLNGTTGIAVGMATDVPPHNLNE 194 Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258 I A L L+D+P+ ++ +L E+++GPD+PT I+ + Y G G R RA + Sbjct: 195 IVSALLHLLDDPDATVAQLCEHVLGPDYPTNAEIITPVADLRAIYETGHGSVRARATYKK 254 Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES--AEDVRIVLFPK 316 E IV+ +PYQV S++IE+IA+ + AK++P LEDIRDES VR+VL P+ Sbjct: 255 EHAN-----IVIDALPYQVSPSKVIEQIAQQMRAKKLPWLEDIRDESDHTSPVRVVLVPR 309 Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376 + +D + LM +F+ +D+E + +N+NV+ + PQV L +L EWL R + + RR Sbjct: 310 SNRVDAEQLMGHLFVTTDLERSYRVNLNVIGLDGRPQVKNLKHLLSEWLTFRSDTVTRRL 369 Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRL 436 + R+Q ++RR+ +L+GLLIA+LN+DE+I I+R+ED+PKPV+++RF+L+E Q + IL +L Sbjct: 370 NHRLQKVERRLHLLEGLLIAFLNLDEVIRIVRSEDEPKPVLIARFALSEEQAEYILETKL 429 Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496 R L +LEE +I+ E + L E+E+I S+L S + I E+ + F + RR Sbjct: 430 RQLARLEEMKIRGEQEALAKEREQILSILGSKTKLKKLIKDELTADAKKFGDA-----RR 484 Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALH 556 + + A +A + M+ EP+TVV+S +GW+R+ K H VD + + +++GD L A+ Sbjct: 485 SPLVQRGAA-QAIDETEMVASEPMTVVLSEKGWVRAAKGHEVDPAGMSYRDGDGLLAAVR 543 Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLV 616 + +T + L +DG+AY+ L S RG+GE + ++ + ++ Sbjct: 544 SRSTYHVAFLDSDGRAYSTLVHTLPSARGNGEPLTGRFSPASGASFQVLASGENNARFVL 603 Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---DHVAVVGENRKLLIF 673 SS G F+ + + GK L +++ + +V D + V LL Sbjct: 604 ASSHGYGFVTRFENLTGRNKAGKAMLNLTTGAHVLTPAQVLNPQTDRIVAVTSAGNLLAI 663 Query: 674 SIDQIPEMSRGKG---VRLQSYKDGGISDVICFKICEGLT-WIDSAGRSYNRSENDLLGW 729 + +PE+ +GKG + + K G V + G T + S R + S DL + Sbjct: 664 TASDLPELDKGKGNKLIEIPKAKLGTERVVAVAAVAPGNTLLVRSGARVMSLSFKDLDTY 723 Query: 730 LGKRGGVGSLVPKGF 744 +G R G+L+P+G+ Sbjct: 724 VGARASRGALLPRGW 738 >gi|330008921|ref|ZP_08306327.1| DNA topoisomerase IV, A subunit [Klebsiella sp. MS 92-3] gi|328535021|gb|EGF61545.1| DNA topoisomerase IV, A subunit [Klebsiella sp. MS 92-3] Length = 755 Score = 508 bits (1309), Expect = e-141, Method: Compositional matrix adjust. Identities = 271/734 (36%), Positives = 439/734 (59%), Gaps = 28/734 (3%) Query: 23 RFALEE----RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78 R AL E YL Y++ I +RA+P + DG KPV RRI++AMSE+GL+ A FKKSAR Sbjct: 7 RLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSART 66 Query: 79 VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMT 137 VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S AA RYTE+R++ Sbjct: 67 VGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLS 126 Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197 + AEL+L + + VD+ ++ EP + P++ PN+L NGT+GIAVGMAT IP HN++ Sbjct: 127 KYAELLLSELGQGTVDWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLR 186 Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257 E+ +AA+ LI+ P+ ++++LL+ + GPDFPT I+ SR I + Y+ GRG R+RA W Sbjct: 187 EVAKAAITLIEQPKTTLDELLDIVQGPDFPTEAEIITSRAEIRKIYQNGRGSVRMRAVWS 246 Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFP 315 E+ +V++ +P+QV ++++E+IA + K++P+++D+RDES + R+V+ P Sbjct: 247 KED-----GAVVISALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVP 301 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 ++ +D + +M +F +D+E + +N+N++ + P V L IL EWL RR+ + RR Sbjct: 302 RSSRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRR 361 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435 + R++ + +R+ IL+GLL+A+LNIDE+I IIR ED+PKP ++SRF ++E Q +AIL L+ Sbjct: 362 LNHRLEKVLKRLHILEGLLVAFLNIDEVIEIIRTEDEPKPALMSRFGISETQAEAILELK 421 Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495 LR L KLEE +I+ E L E++++ ++L S ++ N + E++ + F R Sbjct: 422 LRHLAKLEEMKIRGEQSELEKERDQLQAILASERKMNNLLKKELQADADAFGDD-----R 476 Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555 R+ E A KA + M+ EP+T+V+S GW+RS K H +D L +K GDS K + Sbjct: 477 RSPLHEREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAQGLSYKAGDSWKASA 535 Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615 + ++ + T G++Y + L S RG GE + + L + + KLL Sbjct: 536 KGKSNQPVVFIDTTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVEHMLMESDDQKLL 595 Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--KLVVKVTGDHVAVVGENRKLLIF 673 + S G F+ ++++A R GK + + + LV++ D + + ++L+F Sbjct: 596 MASDAGYGFVCTFNDLVARNRAGKALITLPDNAHVMPPLVIEDESDMLLAITAAGRMLMF 655 Query: 674 SIDQIPEMSRGKGVRLQSYKDG-------GISDVICFKICEGLTWIDSAGRSYNRSENDL 726 + +P++S+GKG ++ S G++ + LT I R +L Sbjct: 656 PVSDLPQLSKGKGNKIISIPAAEAAAGQDGLAHLFVLPPQSTLT-IHVGKRKIKLRPEEL 714 Query: 727 LGWLGKRGGVGSLV 740 G+RG GSL+ Sbjct: 715 QKVTGERGRRGSLM 728 >gi|152971954|ref|YP_001337063.1| DNA topoisomerase IV subunit A [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|150956803|gb|ABR78833.1| DNA topoisomerase IV subunit A [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] Length = 752 Score = 508 bits (1309), Expect = e-141, Method: Compositional matrix adjust. Identities = 271/734 (36%), Positives = 439/734 (59%), Gaps = 28/734 (3%) Query: 23 RFALEE----RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78 R AL E YL Y++ I +RA+P + DG KPV RRI++AMSE+GL+ A FKKSAR Sbjct: 7 RLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSART 66 Query: 79 VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMT 137 VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S AA RYTE+R++ Sbjct: 67 VGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLS 126 Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197 + AEL+L + + VD+ ++ EP + P++ PN+L NGT+GIAVGMAT IP HN++ Sbjct: 127 KYAELLLSELGQGTVDWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLR 186 Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257 E+ +AA+ LI+ P+ ++++LL+ + GPDFPT I+ SR I + Y+ GRG R+RA W Sbjct: 187 EVAKAAITLIEQPKTTLDELLDIVQGPDFPTEAEIITSRAEIRKIYQNGRGSVRMRAVWS 246 Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFP 315 E+ +V++ +P+QV ++++E+IA + K++P+++D+RDES + R+V+ P Sbjct: 247 KED-----GAVVISALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVP 301 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 ++ +D + +M +F +D+E + +N+N++ + P V L IL EWL RR+ + RR Sbjct: 302 RSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRR 361 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435 + R++ + +R+ IL+GLL+A+LNIDE+I IIR ED+PKP ++SRF ++E Q +AIL L+ Sbjct: 362 LNHRLEKVLKRLHILEGLLVAFLNIDEVIEIIRTEDEPKPALMSRFGISETQAEAILELK 421 Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495 LR L KLEE +I+ E L E++++ ++L S ++ N + E++ + F R Sbjct: 422 LRHLAKLEEMKIRGEQSELEKERDQLQAILASERKMNNLLKKELQADADAFGDD-----R 476 Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555 R+ E A KA + M+ EP+T+V+S GW+RS K H +D L +K GDS K + Sbjct: 477 RSPLHEREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAQGLSYKAGDSWKASA 535 Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615 + ++ + T G++Y + L S RG GE + + L + + KLL Sbjct: 536 KGKSNQPVVFIDTTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVEHMLMESDDQKLL 595 Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--KLVVKVTGDHVAVVGENRKLLIF 673 + S G F+ ++++A R GK + + + LV++ D + + ++L+F Sbjct: 596 MASDAGYGFVCTFNDLVARNRAGKALITLPDNAHVMPPLVIEDESDMLLAITAAGRMLMF 655 Query: 674 SIDQIPEMSRGKGVRLQSYKDG-------GISDVICFKICEGLTWIDSAGRSYNRSENDL 726 + +P++S+GKG ++ S G++ + LT I R +L Sbjct: 656 PVSDLPQLSKGKGNKIISIPAAEAAAGQDGLAHLFVLPPQSTLT-IHVGKRKIKLRPEEL 714 Query: 727 LGWLGKRGGVGSLV 740 G+RG GSL+ Sbjct: 715 QKVTGERGRRGSLM 728 >gi|237729948|ref|ZP_04560429.1| DNA topoisomerase IV subunit A [Citrobacter sp. 30_2] gi|226908554|gb|EEH94472.1| DNA topoisomerase IV subunit A [Citrobacter sp. 30_2] Length = 752 Score = 508 bits (1309), Expect = e-141, Method: Compositional matrix adjust. Identities = 268/740 (36%), Positives = 448/740 (60%), Gaps = 29/740 (3%) Query: 23 RFALEE----RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78 R AL E YL Y++ I +RA+P + DG KPV RRI++AMSE+GL+ A FKKSAR Sbjct: 7 RLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSART 66 Query: 79 VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMT 137 VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S AA RYTE+R++ Sbjct: 67 VGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLS 126 Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197 + AE++L + + D+ ++ EP + P++ PN+L NGT+GIAVGMAT IP HN++ Sbjct: 127 KYAEVLLGELGQGTSDWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLR 186 Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257 E+ +AA+ LI+ P+ ++++LL+ + GPD+PT I+ SR I + Y GRG R+RA W Sbjct: 187 EVAKAAITLIEQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWT 246 Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFP 315 E+ +V++ +P+QV ++++E+IA + K++P+++D+RDES + R+V+ P Sbjct: 247 KED-----GAVVISALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVP 301 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 ++ +D + +M +F +D+E + +N+N++ + P V L IL EWLA RR+ + RR Sbjct: 302 RSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEWLAFRRDTVRRR 361 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435 ++R++ + +R+ IL+GLL+A+LNIDE+I IIR+ED+PKP ++SRF ++E Q +AIL L+ Sbjct: 362 LNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRHEDEPKPELMSRFGISETQAEAILELK 421 Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495 LR L KLEE +I+ E D L E++++ ++L S ++ N + E++ + + R Sbjct: 422 LRHLAKLEEMKIRGEQDELAKERDQLQAILASERKMSNLLKKELQADADAYGDD-----R 476 Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555 R+ E A KA + M+ EP+T+V+S GW+RS K H +D L +K GDS K A+ Sbjct: 477 RSPLQEREEA-KAMSEHDMLPSEPVTIVLSQSGWVRSAKGHDIDAPGLSYKAGDSFKSAV 535 Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615 + ++ + + G++Y + L S RG GE + + L + + KLL Sbjct: 536 KGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVEHMLMEGDDQKLL 595 Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--KLVVKVTGDHVAVVGENRKLLIF 673 + S G F+ ++++A R GK + + ++ +V++ D + + + ++L+F Sbjct: 596 MASDAGYGFVCTFNDLVARNRAGKALITLPENARVMQPVVIEDETDMLLAITQAGRMLMF 655 Query: 674 SIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDL 726 + +P++S+GKG ++ + + G++ + LT I R +L Sbjct: 656 PVSDLPQLSKGKGNKIINIPSAEAAKGEDGLAQLYVLPPQSTLT-IHVGKRKIKLRPEEL 714 Query: 727 LGWLGKRGGVGSLVPKGFPR 746 G+RG G+L+ +G R Sbjct: 715 QKVTGERGRRGTLM-RGLQR 733 >gi|183597857|ref|ZP_02959350.1| hypothetical protein PROSTU_01191 [Providencia stuartii ATCC 25827] gi|188022617|gb|EDU60657.1| hypothetical protein PROSTU_01191 [Providencia stuartii ATCC 25827] Length = 752 Score = 508 bits (1309), Expect = e-141, Method: Compositional matrix adjust. Identities = 269/745 (36%), Positives = 445/745 (59%), Gaps = 23/745 (3%) Query: 12 LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71 + + V+ + L E YL Y++ I +RA+P + DG KPV RRI++AMSE+GL+ A Sbjct: 4 ITHDGVERLPLHAFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNNTAK 63 Query: 72 FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYR 130 +KKSAR VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S AA R Sbjct: 64 YKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMR 123 Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190 YTE+R+++ AE++L + VD+ ++ +EP + P++ PN+L NGT+GIAVGMAT Sbjct: 124 YTESRLSKYAEVLLSELAHGTVDWIPNFDGTLNEPKMLPARLPNILLNGTTGIAVGMATD 183 Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250 IP HN +E+ +A +AL+D P +S++ ++ Y+ PDFPT I+ SRE I + Y+ GRG Sbjct: 184 IPPHNAREVAQALVALLDKPTLSLDDIMSYVPAPDFPTEAEIISSREDIRKIYQNGRGSV 243 Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-- 308 R+RA W E+ V+T +P+QV ++++E+IA + AK++P+++D+RDES + Sbjct: 244 RMRAVWEKED-----GNAVITALPHQVSGAKVLEQIASQMRAKKLPMVDDLRDESDHENP 298 Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368 R+V+ P++ +D + +M +F +D+E + +N+N++ + P V L IL EW+ +R Sbjct: 299 TRLVIVPRSNRVDLEQVMNHLFATTDLEKSYRVNLNMIGLDNRPAVKGLVDILNEWIVYR 358 Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQV 428 R+ + R + R++ + RR+ IL GLLIAYLNIDE+I IIR ED+PKPV++SRF+L++ Q Sbjct: 359 RQTVRNRLNHRLEKVLRRLHILDGLLIAYLNIDEVIEIIRTEDEPKPVLMSRFNLSDTQA 418 Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488 +AIL L+LR L KLEE +I+ E D L+ E++++ S+L S ++ I EI+ + + Sbjct: 419 EAILELKLRHLAKLEEMKIRGEQDELIKERDELQSILGSERKLNTLIKKEIQADAKAYGD 478 Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548 RR+ E A KA + ++ EPITVV+S GW+RS K H ++ S L++K G Sbjct: 479 E-----RRSPLREREEA-KALSEHEILPSEPITVVLSEMGWVRSAKGHDIEPSNLNYKAG 532 Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608 DS K A T ++ L T G++Y++ L S R GE + + L + + Sbjct: 533 DSFKGAARGKTNQPVVFLDTTGRSYSVDPLELPSARSQGEPLTGRLSLPPGATVEHVLMA 592 Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---DHVAVVG 665 K L+ S G FI ++++ + GK + + K+ +++ D + + Sbjct: 593 QDEQKYLMASDAGYGFICTFNDLVTKNKTGKALINLPDNAKILTPIEINNEQEDVLLAIT 652 Query: 666 ENRKLLIFSIDQIPEMSRGKG---VRLQSYKDGGISDVICFKI---CEGLTWIDSAGRSY 719 + ++L+F + +P++S+GKG + + + D++ + + + + R Sbjct: 653 KAGRMLMFPVADLPQLSKGKGNKIINITGAQAASGEDLLVWLLVLPAQASITLYFGKRKL 712 Query: 720 NRSENDLLGWLGKRGGVGSLVPKGF 744 +L + +RG G+ +P+G Sbjct: 713 RLKSEELQKYRAERGRRGTSLPRGL 737 >gi|187478866|ref|YP_786890.1| DNA topoisomerase IV subunit A [Bordetella avium 197N] gi|115423452|emb|CAJ49986.1| topoisomerase IV subunit A [Bordetella avium 197N] Length = 772 Score = 508 bits (1308), Expect = e-141, Method: Compositional matrix adjust. Identities = 269/688 (39%), Positives = 404/688 (58%), Gaps = 31/688 (4%) Query: 19 AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78 A++L E+ YL YA+S ++ RA+PD+ DG KPV RRI++AM +MGL GA KSAR+ Sbjct: 21 ALTLGLYAEQAYLDYAVSVVRGRALPDVGDGQKPVQRRILYAMQDMGLTSGAKPVKSARV 80 Query: 79 VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138 VG+V+GK HPHGDQ+ YD++VR+AQ F RYPLI GQGNFG+ DGD+AAA RYTEAR+T Sbjct: 81 VGDVLGKYHPHGDQAAYDAMVRMAQDFSLRYPLIDGQGNFGSRDGDNAAAMRYTEARLTP 140 Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198 +A L+L+ +DE VDF Y+ EP + P++ P +L NG SGIAVGMAT IPSHN++E Sbjct: 141 IARLLLEELDEGTVDFVPNYDGSQQEPQMLPARLPVMLLNGASGIAVGMATEIPSHNLRE 200 Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258 + +A +ALI NP++ E LL I GPDF GG I+ I Y GRG + RARW Sbjct: 201 VAQACVALIRNPQLPDEDLLALIPGPDFAGGGQIITPAADIAHIYATGRGSLKARARWQF 260 Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAK------------------RIPLLED 300 EE+ RG W +VV E+P +++E+I EL K + LL+ Sbjct: 261 EEMARGQWQLVVHELPPGTSCQKVLEEIEELTNPKVKAGKKSLTPDQQQSKAMMLALLDA 320 Query: 301 IRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLD 358 +RDES +D VR+V PK +D D + + + ME P+N+ + P+ L Sbjct: 321 VRDESGKDAAVRLVFEPKTSRVDRDEFVNILLAQTSMECNVPVNLVCIGTDSRPRQKGLR 380 Query: 359 GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV 418 +L EWLA R E + RR+ +R+ + R+ +L+G ++ YLN+DE+I IR+ D+PKP ++ Sbjct: 381 SVLDEWLAFRSETVVRRTRYRLDKVLDRIHVLEGRMVVYLNVDEVIQTIRDSDEPKPALM 440 Query: 419 SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE 478 RF+LTE Q + IL +RLR L +LE ++I+ EL + E+ ++ LL+ N + + Sbjct: 441 DRFALTERQAEDILEMRLRQLARLEGFKIEQELADKREEQSRLQDLLD------NPGSLK 494 Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV 538 +KEI + + G R T E A++A L+ +++ EP+TVV+S GW+R+ + H Sbjct: 495 RLLIKEIEADAKQHGDERRTLIE--SAERAVLETKVLD-EPVTVVVSRNGWLRARQGHGH 551 Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNH 598 D + FK+GD L A TTD ++ + +G+ YT+ L S RG G+ + +IDL Sbjct: 552 DAAQFTFKQGDDLYGAFECRTTDSLIAVGDNGRVYTVAVSALPSARGDGQPVTTMIDLEA 611 Query: 599 NQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV-- 656 IV + + L+ + F S++ + R GK F+ + + + V + Sbjct: 612 GTRIVHTIAAAADSRWLLATQSAYGFATRLSDMSSRQRAGKQFVTLDKGDVLLRPVPLFE 671 Query: 657 TGDHVAVVGENRKLLIFSIDQIPEMSRG 684 +A++ KLL+F +D++ +S G Sbjct: 672 GAVQLALLSSKAKLLVFGLDELKSLSGG 699 >gi|147106|gb|AAA24297.1| topoisomerase IV subunit [Escherichia coli str. K-12 substr. W3110] Length = 730 Score = 508 bits (1308), Expect = e-141, Method: Compositional matrix adjust. Identities = 266/724 (36%), Positives = 438/724 (60%), Gaps = 25/724 (3%) Query: 35 LSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSV 94 + I +RA+P + DG KPV RRI++AMSE+GL+ A FKKSAR VG+V+GK HPHGD + Sbjct: 1 MYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKYHPHGDSAC 60 Query: 95 YDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQVAELILQGVDEDAVD 153 Y+++V +AQPF RYPL+ GQGN+G D S AA RYTE+R+++ +EL+L + + D Sbjct: 61 YEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKYSELLLSELGQGTAD 120 Query: 154 FRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEIS 213 + ++ EP + P++ PN+L NGT+GIAVGMAT IP HN++E+ +AA+ALID P+ + Sbjct: 121 WVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAQAAIALIDQPKTT 180 Query: 214 IEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEI 273 +++LL+ + GPD+PT I+ SR I + Y GRG R+RA W E+ +V++ + Sbjct: 181 LDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKKED-----GAVVISAL 235 Query: 274 PYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFPKNRSLDPDLLMESIFM 331 P+QV +R++E+IA + K++P+++D+RDES + R+V+ P++ +D D +M +F Sbjct: 236 PHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRVDMDQVMNHLFA 295 Query: 332 LSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILK 391 +D+E + +N+N++ + P V L IL EWL RR+ + RR ++R++ + +R+ IL+ Sbjct: 296 TTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRRLNYRLEKVLKRLHILE 355 Query: 392 GLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451 GLL+A+LNIDE+I IIRNED+PKP ++SRF LTE Q +AIL L+LR L KLEE +I+ E Sbjct: 356 GLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAEAILELKLRHLAKLEEMKIRGEQ 415 Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511 L E++++ +L S ++ N + E++ + + RR+ E A KA + Sbjct: 416 SELEKERDQLQGILASERKMNNLLKKELQADAQAYGDD-----RRSPLQEREEA-KAMSE 469 Query: 512 QAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGK 571 M+ EP+T+V+S GW+RS K H +D L++K GDS K A+ + ++ + + G+ Sbjct: 470 HDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGR 529 Query: 572 AYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEI 631 +Y + L S RG GE + + L + + KLL+ S G F+ +++ Sbjct: 530 SYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDL 589 Query: 632 IANTRKGKTFLKVSSEEKM--KLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRL 689 +A R GK + + + +V++ D + + + ++L+F + +P++S+GKG ++ Sbjct: 590 VARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSKGKGNKI 649 Query: 690 -------QSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742 + + G++ + LT I R +L G+RG G+L+ + Sbjct: 650 INIPSAEAARGEDGLAQLYVLPPQSTLT-IHVGKRKIKLRPEELQKVTGERGRRGTLM-R 707 Query: 743 GFPR 746 G R Sbjct: 708 GLQR 711 >gi|238896530|ref|YP_002921270.1| DNA topoisomerase IV subunit A [Klebsiella pneumoniae NTUH-K2044] gi|238548852|dbj|BAH65203.1| DNA topoisomerase IV subunit A [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 752 Score = 508 bits (1308), Expect = e-141, Method: Compositional matrix adjust. Identities = 271/734 (36%), Positives = 439/734 (59%), Gaps = 28/734 (3%) Query: 23 RFALEE----RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78 R AL E YL Y++ I +RA+P + DG KPV RRI++AMSE+GL+ A FKKSAR Sbjct: 7 RLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSART 66 Query: 79 VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMT 137 VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S AA RYTE+R++ Sbjct: 67 VGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLS 126 Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197 + AEL+L + + VD+ ++ EP + P++ PN+L NGT+GIAVGMAT IP HN++ Sbjct: 127 KYAELLLSELGQGTVDWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLR 186 Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257 E+ +AA+ LI+ P+ ++++LL+ + GPDFPT I+ SR I + Y+ GRG R+RA W Sbjct: 187 EVAKAAITLIEQPKTTLDELLDIVQGPDFPTEAEIITSRAEIRKIYQNGRGSVRMRAVWS 246 Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFP 315 E+ +V++ +P+QV ++++E+IA + K++P+++D+RDES + R+V+ P Sbjct: 247 KED-----GAVVISALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVP 301 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 ++ +D + +M +F +D+E + +N+N++ + P V L IL EWL RR+ + RR Sbjct: 302 RSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRR 361 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435 + R++ + +R+ IL+GLL+A+LNIDE+I IIR ED+PKP ++SRF ++E Q +AIL L+ Sbjct: 362 LNHRLEKVLKRLHILEGLLVAFLNIDEVIEIIRTEDEPKPPLMSRFGISETQAEAILELK 421 Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495 LR L KLEE +I+ E L E++++ ++L S ++ N + E++ + F R Sbjct: 422 LRHLAKLEEMKIRGEQSELEKERDQLQAILASERKMNNLLKKELQADADAFGDD-----R 476 Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555 R+ E A KA + M+ EP+T+V+S GW+RS K H +D L +K GDS K + Sbjct: 477 RSPLHEREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAQGLSYKAGDSWKASA 535 Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615 + ++ + T G++Y + L S RG GE + + L + + KLL Sbjct: 536 KGKSNQPVVFIDTTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVEHMLMESDDQKLL 595 Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--KLVVKVTGDHVAVVGENRKLLIF 673 + S G F+ ++++A R GK + + + LV++ D + + ++L+F Sbjct: 596 MASDAGYGFVCTFNDLVARNRAGKALITLPDNAHVMPPLVIEDESDMLLAITAAGRMLMF 655 Query: 674 SIDQIPEMSRGKGVRLQSYKDG-------GISDVICFKICEGLTWIDSAGRSYNRSENDL 726 + +P++S+GKG ++ S G++ + LT I R +L Sbjct: 656 PVSDLPQLSKGKGNKIISIPAAEAAAGQDGLAHLFVLPPQSTLT-IHVGKRKIKLRPEEL 714 Query: 727 LGWLGKRGGVGSLV 740 G+RG GSL+ Sbjct: 715 QKVTGERGRRGSLM 728 >gi|289207717|ref|YP_003459783.1| DNA topoisomerase IV, subunit alpha [Thioalkalivibrio sp. K90mix] gi|288943348|gb|ADC71047.1| DNA topoisomerase IV, A subunit [Thioalkalivibrio sp. K90mix] Length = 753 Score = 508 bits (1308), Expect = e-141, Method: Compositional matrix adjust. Identities = 278/756 (36%), Positives = 445/756 (58%), Gaps = 27/756 (3%) Query: 9 SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68 + +L + + + L+ E+ YL Y++ I +RA+P + DG KPV RRII+AMSE+GL Sbjct: 6 TPSLFANSGEQLPLKDFTEKAYLDYSMYVILDRALPHIGDGLKPVQRRIIYAMSELGLSA 65 Query: 69 GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAA 127 A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF RYP + GQGN+G+ D S A Sbjct: 66 TAKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPFVDGQGNWGSPDDPKSFA 125 Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187 A RYTE+R+++ A+L+L + + VD+ ++ EP V P++ PN+L NG SGIAVGM Sbjct: 126 AMRYTESRLSRYAQLLLSELGQGTVDWVPNFDGALDEPKVLPARLPNVLLNGGSGIAVGM 185 Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247 AT IP HN++E+ A + L+++P+ ++ +L E++ PDFPT I+ + + Y G+ Sbjct: 186 ATDIPPHNLREVAAACVHLLEHPKATLAELCEHLPAPDFPTEAEIISPPAELRKVYETGQ 245 Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307 G R RAR+ R IVVT +P+QV ++L+E+IA I AK++P++ED+RDES Sbjct: 246 GSIRARARYE-----REGDDIVVTALPHQVSGAKLLEQIASQIRAKKLPMVEDLRDESDH 300 Query: 308 D--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365 + R+V+ P++ +D + LM +F +D+E + +NMNV+ + PQV L G+L EWL Sbjct: 301 EHPTRLVITPRSNRVDVEALMAHLFATTDLEKTYRVNMNVIGLDGRPQVRDLAGLLGEWL 360 Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425 R E + RR +R++ + R+ +L+GLLIAYLNIDE+IAIIR D+PKP ++SRF L++ Sbjct: 361 EFRIETVRRRLQWRLEKVQARLHVLEGLLIAYLNIDEVIAIIREYDQPKPELMSRFGLSD 420 Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485 Q +AIL L+LR L KLEE +I+ E D L E+++++ L S ++ Q+ +EI Sbjct: 421 IQAEAILELKLRHLAKLEEMKIRGEQDELATERDQLEKTLGSERRLRTQVR------REI 474 Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545 + D G R + A +A + A++ EP+TVV+S +GW R+ K H VD L++ Sbjct: 475 EKDAADYGDERRSPLVQRAAAQALDESALVPTEPLTVVLSEKGWARAAKGHDVDARGLNY 534 Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605 K GD+ + A+ + + + + G+ YT+ A L S RG GE + ++ V Sbjct: 535 KAGDAFQAAVTGRSNQPVAFIDSTGRTYTIAAHTLPSARGQGEPLSGRVNPPEGARFVGM 594 Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---DHVA 662 + L+ + G F+ + +++ + GK L V + + V DH+A Sbjct: 595 ATGAEEDRWLLGTDHGYGFVAKLGDLLGRQKAGKNVLTVPAGAAVLQPAPVRNPHEDHIA 654 Query: 663 VVGENRKLLIFSIDQIPEMSRGKGVRL-----QSYKDGG--ISDVICFKICEGLTWIDSA 715 VV LL+F ++PE++RGKG +L + KDG + DV + T + A Sbjct: 655 VVTTRGYLLLFPATELPELARGKGNKLIGIPSAALKDGSERVLDVAVLGPQD--TLVVHA 712 Query: 716 GRSYNR-SENDLLGWLGKRGGVGSLVPKGFPRSGKF 750 G+ + + ++G+R G +P+G+ + + Sbjct: 713 GKRFKALVPAEWAEYVGERARRGRQLPRGYQNANRL 748 >gi|77361500|ref|YP_341075.1| DNA topoisomerase IV subunit A [Pseudoalteromonas haloplanktis TAC125] gi|76876411|emb|CAI87633.1| DNA topoisomerase IV, subunit A [Pseudoalteromonas haloplanktis TAC125] Length = 764 Score = 508 bits (1308), Expect = e-141, Method: Compositional matrix adjust. Identities = 273/753 (36%), Positives = 445/753 (59%), Gaps = 23/753 (3%) Query: 6 ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65 +S+++TL+ + ++ ++ E+ YL Y++ I +RA+P + DG KPV RRII+AMSE+G Sbjct: 1 MSDTDTLLMQGIEQQTMGRFTEDAYLNYSMYVIMDRALPHVGDGLKPVQRRIIYAMSELG 60 Query: 66 LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124 L A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D Sbjct: 61 LSANAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAADDPK 120 Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184 S AA RYTEAR+++ +E++L+ + + VD+ ++ EPVV PS+ P++L NG +GIA Sbjct: 121 SFAAMRYTEARLSKFSEILLKELGQGTVDWTPNFDGTMDEPVVLPSRLPHILLNGITGIA 180 Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244 VGMAT IP HNV+E+ A L+D P+ +E+LL + PD+PT I+ + I + Y+ Sbjct: 181 VGMATDIPPHNVREVASACCLLLDKPKTELEELLTLVHAPDYPTDAEIITPKADIHKIYK 240 Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304 GRG ++RA + E+ IV+T +P+Q +++E+IA + AK++P++ D+RDE Sbjct: 241 TGRGSIKMRAVYTQEQ-----GDIVITALPHQCSGGKVLEQIAAQMNAKKLPMVADLRDE 295 Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362 S + RIV+ P++ + + LM +F +D+E + +N+N+L + PQV L IL Sbjct: 296 SDHENPTRIVIIPRSNRIKAEPLMAHLFATTDLEKSYRVNLNMLGLDGRPQVKNLLTILT 355 Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422 EWL RRE + RR +R+ + R+ IL+GLL A+LNIDE+I IIR+EDKPKPV++ RF Sbjct: 356 EWLVFRRETVRRRLQYRLDKVLARLHILEGLLAAFLNIDEVIEIIRSEDKPKPVLMERFD 415 Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482 LT+ Q +AIL L+LR L KLEE++I+ E D L E++K+ L S ++ + EI+E Sbjct: 416 LTDIQAEAILELKLRHLAKLEEFKIRGEQDELAKERDKLQQTLGSDRRMSTLLKKEIQEA 475 Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542 EI+ RR+ E A KA ++ +I E +TVV+S++GW R K H +D+ Sbjct: 476 AEIYGDD-----RRSPVVERLEA-KALNEKDLIPSESVTVVLSDKGWARVGKGHDLDVQG 529 Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602 L ++ GD+ + + + + L + G+A+ A +L S R GE + +L+ + Sbjct: 530 LSYRAGDAYRASARGKSNQPAVFLDSAGRAFATDAHSLPSARSQGEPMTGRFNLSAGANF 589 Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK---VTGD 659 + + LL+ S G FI + ++++ + GK + V + ++ V D Sbjct: 590 EHVVMGEDNQVLLMASDAGYGFITDFKDLVSKNKNGKALVSVPKGGLLLSPIRVNEVASD 649 Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISD-----VICFKICEGLTWIDS 714 + + ++L+F + +P++ +GKG ++ S + + + EG + Sbjct: 650 YCMAISNEGRMLLFPLRDLPKLGKGKGNKIISIPGAKVQAREEFVKVLAVVPEGSSVTLH 709 Query: 715 AG-RSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746 AG R +DL + G+RG G+ +P+G R Sbjct: 710 AGKRKLTLKPSDLEHYYGERGRRGNKLPRGLQR 742 >gi|156973196|ref|YP_001444103.1| DNA topoisomerase IV subunit A [Vibrio harveyi ATCC BAA-1116] gi|156524790|gb|ABU69876.1| hypothetical protein VIBHAR_00876 [Vibrio harveyi ATCC BAA-1116] Length = 762 Score = 508 bits (1308), Expect = e-141, Method: Compositional matrix adjust. Identities = 282/750 (37%), Positives = 451/750 (60%), Gaps = 23/750 (3%) Query: 9 SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68 S + + V+ + +R E+ YL Y++ I +RA+P + DG KPV RRII+AMSE+GL Sbjct: 2 STEITYDGVEQLPMRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61 Query: 69 GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAA 127 A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S A Sbjct: 62 SAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFA 121 Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187 A RYTEA++++ AE++L + + V+++ ++ EP + P++ P++L NG +GIAVGM Sbjct: 122 AMRYTEAKLSKFAEVLLGELGQGTVEWQPNFDGTMKEPQMLPARLPHILLNGVTGIAVGM 181 Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247 AT IP HNV+E+ +A + LIDNP+ + +++++ GPD+PT I+ + I + YR GR Sbjct: 182 ATDIPPHNVREVADATIHLIDNPKAELPDVMQFVKGPDYPTEAEIISPQADIEKIYRNGR 241 Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307 G ++RA W E GS IV+T +P+QV ++L+E+IA + AK++P+++D+RDES Sbjct: 242 GSIKMRAVWHKE----GS-DIVITSLPHQVSGAKLLEQIANQMRAKKLPMVDDLRDESDH 296 Query: 308 D--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365 + RIV+ PK+ +D DLLM +F +D+E + +N+N++ + PQV L IL EW+ Sbjct: 297 ENPTRIVVVPKSNRVDCDLLMNHLFASTDLERSYRVNLNMIGLDNRPQVKGLVQILSEWI 356 Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425 RR + RR R+ + R+ IL+GLL+AYLN+DE+I IIR ED PK V++ RF +T+ Sbjct: 357 EFRRTTVRRRLQHRLDKVMARLHILEGLLVAYLNLDEVIEIIRTEDDPKAVLMERFGITD 416 Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485 Q DAIL+ +LR L KLEE +I+ E D L E+EK++ LL S ++ + EI+ E Sbjct: 417 IQADAILDTKLRHLAKLEEMKIRGEQDELEKEREKLERLLGSERRLNTLLKKEIKADAEK 476 Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545 + RR+ E + A KA ++ ++ EPITVV+S +GWIR K H VD L + Sbjct: 477 YGDD-----RRSPMVERAEA-KALTERDLVPSEPITVVLSEKGWIRHAKGHDVDAEGLSY 530 Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605 K GD + + + +DG++Y+L + +L S R GE I +++ +I Sbjct: 531 KSGDKYLAHARGKSNQQAVFFGSDGRSYSLESHSLPSARSQGEPITGRLNITAGSNIRQV 590 Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVA 662 + + LV S G F+ + SE+++ R GK + + + ++ K + + D + Sbjct: 591 IMGEEEQLWLVGSDAGYGFVCKGSELLSKNRSGKALVTLPANSEVMTPKTIADLDSDEIL 650 Query: 663 VVGENRKLLIFSIDQIPEMSRGKG---VRLQSYKDGGISDVIC--FKICEGLTWIDSAG- 716 + ++L+F I +P++++GKG + + + K +V+ + +G + AG Sbjct: 651 AITNQGRMLLFPIKDLPQLAKGKGNKIINIPAAKAKEREEVLSHLMALPQGASLTLYAGK 710 Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746 R DL + G+RG GSL+P+G R Sbjct: 711 RKLGLKPADLENFRGERGRRGSLLPRGLQR 740 >gi|295097533|emb|CBK86623.1| DNA topoisomerase IV subunit A [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 752 Score = 508 bits (1307), Expect = e-141, Method: Compositional matrix adjust. Identities = 272/740 (36%), Positives = 443/740 (59%), Gaps = 29/740 (3%) Query: 23 RFALEE----RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78 R AL E YL Y++ I +RA+P + DG KPV RRI++AMSE+GL+ A FKKSAR Sbjct: 7 RLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKFKKSART 66 Query: 79 VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMT 137 VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S AA RYTE+R++ Sbjct: 67 VGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLS 126 Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197 + AE++L + + VD+ ++ EP + P++ PN+L NGT+GIAVGMAT IP HN++ Sbjct: 127 KYAEVLLGELGQGTVDWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLR 186 Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257 E+ +AA+ LI+ P+ S++ LL+ + GPD+PT I+ SR I + Y+ GRG R+RA W Sbjct: 187 EVAKAAITLIEQPKTSLDDLLDIVQGPDYPTEAEIITSRAEIRKIYQNGRGSVRMRAVWT 246 Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFP 315 E+ +V+T +P+QV ++++E+IA + K++P+++D+RDES + R+V+ P Sbjct: 247 KED-----GAVVITALPHQVSGAKVLEQIASQMRNKKLPMVDDLRDESDHENPTRLVIVP 301 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 ++ +D + +M +F +D+E + +N+N++ + P V L IL EWLA RR+ + RR Sbjct: 302 RSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEWLAFRRDTVRRR 361 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435 + R++ + +R+ IL+GLL+A+LNIDE+I IIR ED+PKP ++SRF ++E Q +AIL L+ Sbjct: 362 LNHRLEKVLKRLHILEGLLVAFLNIDEVIEIIRTEDEPKPALMSRFGISETQAEAILELK 421 Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495 LR L +LEE +I+ E + L E++++ ++L S ++ + E++ + F R Sbjct: 422 LRHLARLEEMKIRGEQNELEKERDQLQAILASERKMNTLLKKELQADADAFGDD-----R 476 Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555 R+ E A KA + M+ EP+T+V+S GW+RS K H +D L +K GDS K A+ Sbjct: 477 RSPLHEREEA-KAMNEHDMLPSEPVTIVLSQSGWVRSAKGHDIDAPGLSYKSGDSFKAAV 535 Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615 + + + + G++Y + L S RG GE + + L + + KLL Sbjct: 536 KGKSNQPVAFIDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMEADDQKLL 595 Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--KLVVKVTGDHVAVVGENRKLLIF 673 + S G FI +++++ R GK + + + L+++ D + + ++L+F Sbjct: 596 MASDAGYGFICTFNDLVSRNRAGKALISLPDNAHVMPPLIIENESDMLLAITAAGRMLMF 655 Query: 674 SIDQIPEMSRGKGVRLQSYKDG-------GISDVICFKICEGLTWIDSAGRSYNRSENDL 726 + +PE+S+GKG ++ S G++ + LT I R +L Sbjct: 656 PVSDLPELSKGKGNKIISIPSAEAAKGVDGLAHLFLLPPQSTLT-IHVGKRKIKLRPEEL 714 Query: 727 LGWLGKRGGVGSLVPKGFPR 746 +G+RG GSL+ +G R Sbjct: 715 QKVVGERGRRGSLM-RGLQR 733 >gi|145637576|ref|ZP_01793233.1| DNA topoisomerase IV subunit A [Haemophilus influenzae PittHH] gi|145269262|gb|EDK09208.1| DNA topoisomerase IV subunit A [Haemophilus influenzae PittHH] Length = 747 Score = 508 bits (1307), Expect = e-141, Method: Compositional matrix adjust. Identities = 277/743 (37%), Positives = 437/743 (58%), Gaps = 26/743 (3%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 E ++ + LR E+ YL Y++ I +RA+P + DG KPV RRI++AMSE+GL+ A +KK Sbjct: 7 EGIEQMPLRTFTEKAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKYKK 66 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTE 133 SAR VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S AA RYTE Sbjct: 67 SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 126 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 +R+++++E++L + + VD++ ++ +EP P++ P++L NGT+GIAVGMAT IP Sbjct: 127 SRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATDIPP 186 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ EI +AA+ L+DNP+ ++ +LE + GPDFPT I+ + I + Y GRG ++R Sbjct: 187 HNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRGSIKMR 246 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRI 311 A W E+ I+++ +P+Q S++I +IA+ + AK++P+LEDIRDE+ + +RI Sbjct: 247 AIWKKED-----GEIIISALPHQSSPSKVIAQIADQMTAKKLPMLEDIRDEADHENPIRI 301 Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371 VL P++ +D D LM +F +D+E + +NMN++ + P V L IL EWL RR Sbjct: 302 VLVPRSNRVDTDALMAHLFATTDLEKSYRVNMNMIGLDHKPAVKGLLEILNEWLDFRRTT 361 Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431 + RR +R+ + R+ IL+GL+IA+LNIDE+I IIR ED PK +++RF+L++ Q DAI Sbjct: 362 VTRRLQYRLDKVLSRLHILEGLMIAFLNIDEVIEIIRQEDDPKAELMARFNLSDEQADAI 421 Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491 LNLRLR L KLEE Q+K+E D L E+ ++++L S ++ I EI+E + ++ Sbjct: 422 LNLRLRHLAKLEENQLKAEQDELEKERLNLEAILESERRLNTLIKKEIQEDAKKYASP-- 479 Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551 R + E A K + M EP+TV++S GW+R K H +D +L +K GDS Sbjct: 480 ---RMSQLVEREEA-KMISESDMTPAEPVTVILSEMGWVRCAKGHDIDPKSLSYKAGDSY 535 Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611 + ++ + + G++Y L +L S R GE + ++L I + Sbjct: 536 LAHACGKSNQAVVFIDSTGRSYALDPLSLPSARSQGEPLTGKLNLPTGATIEYVVMASEQ 595 Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVAVVGENR 668 +LL+ S G FI + ++IA + GK + + K+ K ++ T VA+ R Sbjct: 596 QELLMASDAGYGFICKFEDLIARNKAGKALISLPENAKVLKPKTLINSTALVVAITSAGR 655 Query: 669 KLLIFSIDQIPEMSRGKGVRLQSYKDGGISD-------VICFKICEGLTWIDSAGRSYNR 721 +LIF +P +S+GKG ++ + D ++ L + S R Sbjct: 656 -MLIFPAQDLPVLSKGKGNKMITIPAANAKDRSELLTKLLLISDQASLEFY-SGKRKIVL 713 Query: 722 SENDLLGWLGKRGGVGSLVPKGF 744 DL + +RG GS +P+G Sbjct: 714 KPEDLQKFRAERGRKGSTLPRGL 736 >gi|71066423|ref|YP_265150.1| DNA topoisomerase IV subunit A [Psychrobacter arcticus 273-4] gi|71039408|gb|AAZ19716.1| DNA topoisomerase IV subunit A [Psychrobacter arcticus 273-4] Length = 772 Score = 508 bits (1307), Expect = e-141, Method: Compositional matrix adjust. Identities = 278/760 (36%), Positives = 443/760 (58%), Gaps = 37/760 (4%) Query: 12 LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71 L E + S+ E+ YL YA+ I +RA+P++ DG KPV RRI++AMSE+GL A Sbjct: 13 LANEPMDTRSVAEFAEQAYLNYAMYVIMDRALPNIADGLKPVQRRIVYAMSELGLKSTAK 72 Query: 72 FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYR 130 KKSAR VG+V+GK HPHGD + Y+++V +AQPF RYPLI+GQGN+G+ D S AA R Sbjct: 73 AKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLITGQGNWGSPDDPKSFAAMR 132 Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190 YTEA+M+ A +L + + VD++D ++ EP P++ PN+L NGT+GIAVGMAT Sbjct: 133 YTEAKMSAYANTLLAELGQGTVDWQDNFDGTMQEPTTLPARLPNILLNGTTGIAVGMATD 192 Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250 IP HN+ E+ AA+ L+ NPE+S+++L + I PD PT I+ S++ + Y GRG + Sbjct: 193 IPPHNLIEVVRAAIRLLKNPELSVKQLTQSIPAPDLPTPAEIITSKKDLQAMYETGRGSY 252 Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-- 308 ++RA + ++ + +++ +PYQV +++ E+IA+L+ K++P + DI DES + Sbjct: 253 KMRATFHIDPKEKN--LVIIDALPYQVSGNKIQEQIAKLMTDKKLPWITDIHDESDHENA 310 Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368 RIVL ++ +D D +M +F +D+E+ + +NMN++ + PQV L IL+EWL R Sbjct: 311 CRIVLELRSTRVDVDRVMSHLFASTDLESNYRVNMNMIGLNGKPQVKNLKEILEEWLVCR 370 Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQV 428 R V+ RR +R+ ID+R+ IL GLLIAYLNIDE+I IIR ED PK ++ + LT+ Q Sbjct: 371 RSVVTRRLQYRLDKIDKRLHILAGLLIAYLNIDEVIRIIREEDDPKLSLMQDYDLTDIQA 430 Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488 +AIL++RLR L KLEE +++ E D L AE+ I L+ N + + E+ + Sbjct: 431 NAILDIRLRQLAKLEEIELRREQDELAAERAIIQEYLD------NPDSLTTLMIDELTAD 484 Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548 + G R + +A + ++ EPIT V+S GWIR+ K H VD + + ++ G Sbjct: 485 MKEHGNERVSPLAEREEAQALKESDLVPSEPITAVLSKAGWIRAAKGHDVDAAGMSYRSG 544 Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608 D+ + + + ++I +L + G++Y++ A +L S RG G+ + ++ Sbjct: 545 DAYQAHVRGKSNEKIYVLDSTGRSYSIDAHSLASARGQGDPLTSVLKPPAGATFEQLLTG 604 Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM----------KLVVKV-- 656 ++++ SS+G FI + +N + GK + +++ ++ L+V Sbjct: 605 ADDQRIILASSQGYGFINTIGNLDSNQKAGKNIINLAANSRLLPIACIDTQADLLVSAEN 664 Query: 657 ----------TGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFK-I 705 T DH+AVV LLIF++D +PE +RGKG ++ + K G +V+ + Sbjct: 665 NGISDTENSSTPDHIAVVTNAGYLLIFALDDLPEQARGKGNKMITLK--GDEEVLTITPL 722 Query: 706 CEGLTWIDSAG-RSYNRSENDLLGWLGKRGGVGSLVPKGF 744 + + I +AG R DL + KRG G +P+GF Sbjct: 723 SKQDSLIITAGKRHVTLKPMDLANYTSKRGSRGGQLPRGF 762 >gi|293610016|ref|ZP_06692317.1| DNA topoisomerase IV [Acinetobacter sp. SH024] gi|292827248|gb|EFF85612.1| DNA topoisomerase IV [Acinetobacter sp. SH024] Length = 739 Score = 508 bits (1307), Expect = e-141, Method: Compositional matrix adjust. Identities = 279/732 (38%), Positives = 439/732 (59%), Gaps = 21/732 (2%) Query: 27 EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86 E+ YL YA+ I +RA+P + DG KPV RRI++AMSE+GL KKSAR VG+V+GK Sbjct: 19 EQAYLNYAMYVIMDRALPHISDGLKPVQRRIVYAMSELGLKSSGKPKKSARTVGDVLGKY 78 Query: 87 HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQVAELILQ 145 HPHGD + Y+++V +AQPF RYPLI GQGN+G+ D S AA RYTEA+++ +EL+L Sbjct: 79 HPHGDSACYEAMVLMAQPFSYRYPLIEGQGNWGSPDDPKSFAAMRYTEAKLSAYSELLLS 138 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 + + +++D ++ EP+ P++ PN+L NGT+GIAVGMAT IP HN++E+ + +A Sbjct: 139 ELGQGTSEWQDNFDGSLKEPITLPARVPNILLNGTTGIAVGMATDIPPHNLREVIKGTIA 198 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265 LI NP+ S EKL EYI PD PT I+ E +++ GRG +R+RA + +E+ Sbjct: 199 LIRNPQTSDEKLAEYIPAPDLPTKAEIITPPEELLKIQTTGRGSYRMRAVYTIEKNE--- 255 Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFPKNRSLDPD 323 IV+TE+PYQV S++I +IA+ + AK++PL+ D+RDES + R+V+ ++ +D + Sbjct: 256 --IVITELPYQVSGSKVITQIADQMQAKKLPLVVDVRDESDHENPTRLVIVLRSNRIDAE 313 Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383 +M +F +D+E+ + +N+N++ PQV + IL EW+ R++ + RR + + I Sbjct: 314 AVMSHLFATTDLESSYRVNLNMIGEDGRPQVKSIRRILLEWIEIRKKTVTRRLEYHLNRI 373 Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLE 443 ++R+ IL GLLIAYL+ID +I IIR ED+PKPV++ F + E Q +AIL L+LR L KLE Sbjct: 374 EKRLHILAGLLIAYLDIDTVIRIIREEDQPKPVLMDHFKIDEIQAEAILELKLRHLAKLE 433 Query: 444 EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVS 503 E +I+ E D L A+ I L + + N I E++E + F RR+ V+ Sbjct: 434 EMEIRQEQDELSAKAAIIREQLENPESLKNLIIGELKEDAKKFGDE-----RRSPI--VA 486 Query: 504 RADKATL-QQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDR 562 RA+ + +Q ++ E +TVV+S GWIR+ K VD L+++ GD T R Sbjct: 487 RAEAVQIREQDLMPAEAVTVVLSEAGWIRAAKGADVDAENLNYRAGDQYLSHAVGKTNQR 546 Query: 563 ILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGN 622 I L G++Y LP +L S RG GE + + + ++ D +L+ SS G Sbjct: 547 IYFLDETGRSYALPISSLPSARGLGEPLSSKLAPASGVAFIQVYLDDEESELIAASSSGY 606 Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEK-MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEM 681 F + ++ N + GK+FL V + K + L+ H+AV+ +LLI + ++P + Sbjct: 607 GFKTQVKQLDTNAKAGKSFLSVPEKSKALPLISAQNMTHLAVLSSAGRLLIIDLSELPNL 666 Query: 682 SRGKGVRL-QSYKDGGISDVICFKICEGLTWIDSAGRSYNRSE-NDLLGWLGKRGGVGSL 739 ++GKG +L Q I + + E + + AG+ + + + +DL ++GKR G L Sbjct: 667 NKGKGNKLIQLEAKEQILSMTTLNLDEIIQVV--AGQQHLKLKGDDLQKYMGKRASKGHL 724 Query: 740 VPKGFPRSGKFL 751 +P+G+ ++ K L Sbjct: 725 LPRGYQKANKLL 736 >gi|114775359|ref|ZP_01450927.1| DNA topoisomerase IV subunit A [Mariprofundus ferrooxydans PV-1] gi|114553470|gb|EAU55851.1| DNA topoisomerase IV subunit A [Mariprofundus ferrooxydans PV-1] Length = 1441 Score = 508 bits (1307), Expect = e-141, Method: Compositional matrix adjust. Identities = 268/716 (37%), Positives = 434/716 (60%), Gaps = 38/716 (5%) Query: 26 LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85 E Y +Y L + +RAIPD+RDG KPVHRRI++AM + L KKSAR+VG+VIGK Sbjct: 690 FRELYRSYGLKVVGDRAIPDVRDGMKPVHRRILYAMEMLKLRSNTKTKKSARVVGDVIGK 749 Query: 86 LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145 HPHGD +VY ++VR+AQP+V RYPLI GQGNFG+IDGDSAAA RYTEARMT +AE IL Sbjct: 750 YHPHGDSAVYGAMVRMAQPWVMRYPLIDGQGNFGSIDGDSAAAMRYTEARMTPIAEAILS 809 Query: 146 GVDEDAVD-FRDTYNEEDSEPVVFPSKFPNLLANGTSG-IAVGMATSIPSHNVQEICEAA 203 G +D + ++ Y+++D EP+V P+ FP ++ N ++G AVG T IPSHN+ E+ A Sbjct: 810 GDLKDGITMYQPNYDDQDKEPMVLPAPFPLVMMNSSTGNPAVGFKTEIPSHNLTELLGAC 869 Query: 204 LAL---------IDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 +AL +++P + ++I PDFP GGII + E + Y G G +R+ Sbjct: 870 IALAKKRGRTGAMESP-TDFRDVRKHITAPDFPGGGIIANTHEELEAMYAKGYGKMLLRS 928 Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLI----EKIAELIIA--KRIPLLEDIRDE-SAE 307 +W VE + +G W IVVTEIPY ++KS L+ +I++ IA +++P+++D+RDE SAE Sbjct: 929 KWHVETLPKGLWQIVVTEIPYGIEKSPLLIEMGARISDKTIAESRQLPMIDDLRDESSAE 988 Query: 308 D-VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG---------RVPQVMPL 357 D +RIVLFPK+R+LDP+ +M +F ++++ L R+P + PL Sbjct: 989 DGIRIVLFPKSRNLDPEQIMLHLFSATNLQVTIQYATYALEKWHDTPNGERYRLPSLFPL 1048 Query: 358 DGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM 417 D +++ +L +R+E++ R+ R+ I R+ IL GLL+AY NI EI+ II + D+P+P++ Sbjct: 1049 DKMIRSFLDYRQELVMSRAKVRLAEITARLHILDGLLLAYPNIREIVEIILDNDEPRPII 1108 Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477 + ++SLTE Q DAIL +RL LRKLE+ +++ E D L E + +L+ +W I Sbjct: 1109 MEKYSLTEIQTDAILAIRLSQLRKLEQMKLQGEHDRLSEEAAGLHQVLDDDAHRWKHITG 1168 Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHS 537 E+R+ + F RRT + + ++ ++ +EP+T ++S +GW++ ++ S Sbjct: 1169 ELRDALKKFGD-----ERRTIVDPDAPKSRPMSREQIVSREPVTAILSKQGWLKGMRGSS 1223 Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLN 597 +D+S++ F+E D L + HTTD+++L+ G+A+++ A +L SGRG+GE + + Sbjct: 1224 IDVSSVRFRESDKLLDSAAGHTTDQLILIGRTGRAFSMLAADLPSGRGNGEPVSKHFVFS 1283 Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657 N+ + + LV ++ G+AF S++++ +KGK F+ + ++ + ++ Sbjct: 1284 INEAPTRMVMVKPDAEYLVATTAGHAFRAMGSDMVSANKKGKAFINFPASSRLLCIREIE 1343 Query: 658 GDH--VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDG--GISDVICFKICEGL 709 H A + ++ + D+ P + +GKG+ + K G G+ D + EG+ Sbjct: 1344 AAHDAFAFIDSYGRMAVILKDEFPLLGKGKGLTAVAMKKGSKGLRDAAPITLKEGI 1399 >gi|330807212|ref|YP_004351674.1| DNA topoisomerase IV subunit A [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327375320|gb|AEA66670.1| DNA topoisomerase IV subunit A [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 754 Score = 508 bits (1307), Expect = e-141, Method: Compositional matrix adjust. Identities = 276/753 (36%), Positives = 448/753 (59%), Gaps = 29/753 (3%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 + V+ SL E YL Y++ I +RA+P + DG KPV RRII+AMSE+GLD + KK Sbjct: 10 DGVERRSLADFTENAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELGLDADSKHKK 69 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTE 133 SAR VG+V+GK HPHGD + Y+++V +AQPF RY L+ GQGN+G D S AA RYTE Sbjct: 70 SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPDDPKSFAAMRYTE 129 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 AR+++ +E++L + + D+ ++ EP+V P++ PN+L NGT+GIAVGMAT +P Sbjct: 130 ARLSRYSEVLLSELGQGTADWGPNFDGTLDEPLVLPARLPNILLNGTTGIAVGMATDVPP 189 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN++E+ A + L+D P+ ++E+L E+I GPD+PT I+ R +++ Y GRG R+R Sbjct: 190 HNLREVATACVRLLDEPKATVEQLCEHIQGPDYPTEAEIITPRADLLKIYETGRGSVRMR 249 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAK--RIPLLEDIRDESAED--V 309 A + VE+ I+VT +P+QV ++++E+IA ++ AK + P + D+RDES + Sbjct: 250 AVYHVED-----GDIIVTALPHQVSGAKVLEQIAAMMQAKPSKAPQVADLRDESDHENPC 304 Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369 RIV+ P N +D D LM+ +F +D+E+ + +N+N++ + PQ+ L +L EWL R Sbjct: 305 RIVIIPVNSRVDHDALMQHLFASTDLESSYRVNINIIGLDGKPQLKNLRALLVEWLEFRV 364 Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429 + + RR FR+ ++RR+ +L GLLIAYLN+DE+I IIR E+ PK +++RF+L+E Q D Sbjct: 365 KTVRRRLQFRLDKVERRLHLLDGLLIAYLNLDEVIHIIRTEEHPKASLIARFALSEIQAD 424 Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489 IL+ RLR L +LEE ++++E D LL E+ K+ +LL S + + E+ + E + Sbjct: 425 YILDTRLRQLARLEEMKLRAEQDELLKEQAKLQALLGSEAKLKKLVRTELLKDAETYGDD 484 Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549 RR+ E + A KA + ++ E +TVV+S +GW+RS K H +D + L +K GD Sbjct: 485 -----RRSPIVERAEA-KALSEHDLLPNEKVTVVLSEKGWVRSAKGHDIDATGLSYKAGD 538 Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609 K + + + + G++Y++PA L S RG GE + + + D Sbjct: 539 GFKALAAGRSNQFAVFVDSTGRSYSVPAHTLPSARGQGEPLTGRLTPPPGATFECVLMPD 598 Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVAVVGE 666 ++ S G F+V+ ++ A + GK L + + K+ + V + +A V Sbjct: 599 DDGLYVIASDAGYGFVVKGEDLQAKNKAGKALLSLPNNAKVIAPRPVADRESNWLASVTT 658 Query: 667 NRKLLIFSIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTWIDSAG-RS 718 +LL+F I +P++ +GKG ++ + ++ ++D+ + EG T + AG R+ Sbjct: 659 EGRLLVFKISDLPQLGKGKGNKIIGISGERVASREEYVTDIAV--LPEGATLVLQAGKRT 716 Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751 + +DL + G+RG G+ +P+GF R L Sbjct: 717 LSLKADDLEHYKGERGRRGNKLPRGFQRVDALL 749 >gi|261342452|ref|ZP_05970310.1| DNA topoisomerase IV, A subunit [Enterobacter cancerogenus ATCC 35316] gi|288315089|gb|EFC54027.1| DNA topoisomerase IV, A subunit [Enterobacter cancerogenus ATCC 35316] Length = 752 Score = 508 bits (1307), Expect = e-141, Method: Compositional matrix adjust. Identities = 274/740 (37%), Positives = 440/740 (59%), Gaps = 29/740 (3%) Query: 23 RFALEE----RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78 R AL E YL Y++ I +RA+P + DG KPV RRI++AMSE+GL A FKKSAR Sbjct: 7 RLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLSASAKFKKSART 66 Query: 79 VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMT 137 VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S AA RYTE+R++ Sbjct: 67 VGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLS 126 Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197 + AEL+L + + VD+ ++ EP + P++ PN+L NGT+GIAVGMAT IP HN++ Sbjct: 127 KYAELLLGELGQGTVDWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLR 186 Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257 E+ AA+ LI+ P+ S+++LL+ + GPD+PT I+ SR I + Y+ GRG R+RA W Sbjct: 187 EVANAAITLIEQPKTSLDELLDIVQGPDYPTEAEIITSRAEIRKIYQNGRGSVRMRAVWN 246 Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFP 315 E+ +V+T +P+QV ++++E+IA + K++P+++D+RDES + R+V+ P Sbjct: 247 KED-----GAVVITALPHQVSGAKVLEQIASQMRNKKLPMVDDLRDESDHENPTRLVIVP 301 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 ++ +D D +M +F +D+E + +N+N++ + P V L IL EWL RR+ + RR Sbjct: 302 RSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEWLTFRRDTVRRR 361 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435 + R++ + +R+ IL+GLL+A+LNIDE+I IIR ED+PKP ++SRF ++E Q +AIL L+ Sbjct: 362 LNHRLEKVLKRLHILEGLLVAFLNIDEVIEIIRTEDEPKPALMSRFGISETQAEAILELK 421 Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495 LR L KLEE +I+ E D L E++K+ ++L S ++ + E++ + F R Sbjct: 422 LRHLAKLEEMKIRGEQDELEKERDKLQAILASERKMNTLLKKELQADADAFGDD-----R 476 Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555 R+ E A +A + M EP+T+V+S GW+RS K H +D L +K GDS K A+ Sbjct: 477 RSPLHEREEA-RAMNEHDMQPSEPVTIVLSQSGWVRSAKGHDIDAPGLSYKAGDSFKAAV 535 Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615 + + + + G++Y + L S RG GE + + L + + KLL Sbjct: 536 KGKSNQPVAFIDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMESDDQKLL 595 Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--KLVVKVTGDHVAVVGENRKLLIF 673 + S G FI +++++ R GK + + + LV++ D + + ++L+F Sbjct: 596 MASDAGYGFICTFNDLVSRNRAGKALISLPDNAHVMPPLVIENDSDMLLAITAAGRMLMF 655 Query: 674 SIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDL 726 + +P +S+GKG ++ + + G++ + LT I R +L Sbjct: 656 PVSDLPALSKGKGNKIINIPSAEAAKGEDGLAHLFILPPQSTLT-IHVGKRKIKLRPEEL 714 Query: 727 LGWLGKRGGVGSLVPKGFPR 746 +G+RG GSL+ +G R Sbjct: 715 QKVVGERGRRGSLM-RGLQR 733 >gi|283836445|ref|ZP_06356186.1| DNA topoisomerase IV, A subunit [Citrobacter youngae ATCC 29220] gi|291067820|gb|EFE05929.1| DNA topoisomerase IV, A subunit [Citrobacter youngae ATCC 29220] Length = 752 Score = 508 bits (1307), Expect = e-141, Method: Compositional matrix adjust. Identities = 256/676 (37%), Positives = 424/676 (62%), Gaps = 20/676 (2%) Query: 23 RFALEE----RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78 R AL E YL Y++ I +RA+P + DG KPV RRI++AMSE+GL+ A FKKSAR Sbjct: 7 RLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSART 66 Query: 79 VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMT 137 VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S AA RYTE+R++ Sbjct: 67 VGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLS 126 Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197 + AE++L + + D+ ++ EP + P++ PN+L NGT+GIAVGMAT IP HN++ Sbjct: 127 KYAEVLLGELGQGTSDWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLR 186 Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257 E+ +AA+ LI+ P+ ++++LL+ + GPD+PT I+ SR I + Y GRG R+RA W Sbjct: 187 EVAKAAITLIEQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWT 246 Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFP 315 E+ +V++ +P+QV ++++E+IA + K++P+++D+RDES + R+V+ P Sbjct: 247 KED-----GAVVISALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVP 301 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 ++ +D + +M +F +D+E + +N+N++ + P V L IL EWLA RR+ + RR Sbjct: 302 RSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEWLAFRRDTVRRR 361 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435 ++R++ + +R+ IL+GLL+A+LNIDE+I IIR+ED+PKP ++SRF ++E Q +AIL L+ Sbjct: 362 LNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRHEDEPKPELMSRFGISETQAEAILELK 421 Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495 LR L KLEE +I+ E D L E++++ ++L S ++ N + E++ E + R Sbjct: 422 LRHLAKLEEMKIRGEQDELAKERDQLQAILASERKMNNLLKKELQADAEAYGDD-----R 476 Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555 R+ E A KA + M+ EP+T+V+S GW+RS K H +D L +K GDS K A+ Sbjct: 477 RSPLQEREEA-KAMSEHDMLPSEPVTIVLSQSGWVRSAKGHDIDAPGLSYKAGDSFKSAV 535 Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615 + ++ + + G++Y + L S RG GE + + L + + + KLL Sbjct: 536 KGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVEHMLMENDDRKLL 595 Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--KLVVKVTGDHVAVVGENRKLLIF 673 + S G F+ ++++A R GK + + + +V++ D + + ++L+F Sbjct: 596 MASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDETDMLLAITTAGRMLMF 655 Query: 674 SIDQIPEMSRGKGVRL 689 + +P++S+GKG ++ Sbjct: 656 PVSDLPQLSKGKGNKI 671 >gi|330828213|ref|YP_004391165.1| Topoisomerase IV subunit A [Aeromonas veronii B565] gi|328803349|gb|AEB48548.1| Topoisomerase IV subunit A [Aeromonas veronii B565] Length = 758 Score = 507 bits (1306), Expect = e-141, Method: Compositional matrix adjust. Identities = 280/754 (37%), Positives = 447/754 (59%), Gaps = 25/754 (3%) Query: 6 ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65 +S++ L + V+ +R E+ YL Y++ I +RA+P + DG KPV RRII+AMSE+G Sbjct: 1 MSDAIELSLDGVERQPMRTFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELG 60 Query: 66 LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124 L + KKSAR VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D Sbjct: 61 LSALSKHKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPK 120 Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184 S AA RYTEAR+++ +EL+L + + V++ ++ EPVV P++ P++L NG +GIA Sbjct: 121 SFAAMRYTEARLSRFSELLLSELGQGTVEWTPNFDGTMKEPVVLPARLPHILLNGVTGIA 180 Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244 VGMAT IP HN +E+ A L+DNP ++ L+++I GPD+PT I+ R+ I + Y Sbjct: 181 VGMATDIPPHNAREVAYACAELLDNPNAGLDVLMQHIQGPDYPTNAEIITPRDDIRKIYE 240 Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304 G+G + RA W EE G IV+T +P+Q ++++E+IA ++AK++P++ D+RDE Sbjct: 241 TGKGSIKQRAVWS-EEDGD----IVITALPHQASGAKIMEQIAAQMVAKKLPMVTDLRDE 295 Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362 S + R+V+ P++ +D + LM +F +D+E + +N+N+L + PQV L IL Sbjct: 296 SDHENPTRLVIVPRSNRVDVEGLMAHLFATTDLEKNYRVNLNILGLDNRPQVKCLKTILS 355 Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422 EW+ RRE + RR FR+ + R+ IL+GLLIAYLNIDE+I IIR ED+P VMV RF+ Sbjct: 356 EWIQFRRETVRRRLQFRLDKVLARLHILEGLLIAYLNIDEVIEIIRTEDEPGKVMVERFN 415 Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482 +TE Q +AIL L+LR L KLEE+++++E + L E++K++ +L S +++ N + Sbjct: 416 ITETQAEAILELKLRHLAKLEEFKLRAEQNELAEERDKLELILGS-ERRLNTLL-----K 469 Query: 483 KEIFSKSTDLG-RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS 541 KE+ + + G RRT E + A A ++ +I EP+TV++S++GW+R+ K H VD++ Sbjct: 470 KELLADAEKYGDDRRTPLVERATA-VALTEKELIPSEPVTVILSDKGWVRAAKGHDVDVA 528 Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD 601 L +K GDS + + + LST G+ Y L + L S R GE + L ++ Sbjct: 529 GLSYKAGDSYLAHACGRSNQQAVFLSTLGRTYALESHTLPSARSQGEPLTGRFALGAGEE 588 Query: 602 IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--- 658 + + + L+ S G F+ ++I + GK L V ++ K+ Sbjct: 589 VRHLVMGNEGEPYLIASDAGYGFVCTYDDLIGKNKNGKALLTVPEGGQVMAPQKIGSPET 648 Query: 659 DHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISD-----VICFKICEGLTWID 713 D + ++L+F ++ +P + +GKG +L S + V+ I +G + Sbjct: 649 DLCMAISNEGRMLLFPLNTLPVLGKGKGNKLISIPSARVKAREEFVVMAAVIPQGQSVTL 708 Query: 714 SAG-RSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746 AG R +DL + G+RG G+ +P+G R Sbjct: 709 FAGKRKLTLKPSDLDYYRGERGRRGAKLPRGLQR 742 >gi|197334816|ref|YP_002157022.1| DNA topoisomerase IV, A subunit [Vibrio fischeri MJ11] gi|197316306|gb|ACH65753.1| DNA topoisomerase IV, A subunit [Vibrio fischeri MJ11] Length = 758 Score = 507 bits (1306), Expect = e-141, Method: Compositional matrix adjust. Identities = 273/750 (36%), Positives = 443/750 (59%), Gaps = 23/750 (3%) Query: 9 SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68 S + E V+ + LR E+ YL Y++ I +RA+P + DG KPV RRII+AMSE+GL Sbjct: 2 STEMSLEGVEQLPLRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61 Query: 69 GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAA 127 A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S A Sbjct: 62 NAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFA 121 Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187 A RYTE+++++ A+++L + + VD++ ++ EP + PS+ P++L NG +GIAVGM Sbjct: 122 AMRYTESKLSKFADVLLGEIGQGTVDWQPNFDGTMKEPTILPSRLPHILLNGITGIAVGM 181 Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247 AT IP HNV+E+ A + L++NP+ ++++++++ GPD+PT I+ I + YR GR Sbjct: 182 ATDIPPHNVREVANATVHLLENPKADLDEVMDFVKGPDYPTKAEIISPSSEIKKIYRSGR 241 Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307 G ++RA W EE IV+T +P+QV S+L+E+IA + AK++P+++D+RDES Sbjct: 242 GSIKMRAVWHKEE-----GDIVITALPHQVSGSKLLEQIANQMRAKKLPMVDDLRDESDH 296 Query: 308 D--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365 + RIV+ P++ +D + LM +F +D+E + +N+N++ + + PQV L IL EW+ Sbjct: 297 ENPTRIVIVPRSNRVDAEPLMNHLFASTDLEKSYRVNLNMIGLDQRPQVKGLVSILSEWI 356 Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425 RR + +R R+ + R+ IL+GLL AYLNIDE+I IIR ED PK +++RF L+E Sbjct: 357 EFRRTTVRKRLQHRLDKVLARLHILEGLLAAYLNIDEVIEIIRTEDDPKHELMTRFDLSE 416 Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485 Q +AIL ++LR L KLEE +I+ E D L E++ ++ LL S ++ I EI E Sbjct: 417 KQAEAILEIKLRQLAKLEEIKIRGEQDELAKERDYLEKLLGSERRLNTLIKKEILADAEK 476 Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545 F RR+ E + A KA ++ +I E ITVV+S++GWIR K H VD + L++ Sbjct: 477 FGDD-----RRSPLVERAEA-KAMTERDLIPSEAITVVLSDKGWIRHAKGHDVDPTTLNY 530 Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605 K GD + + + ++G++Y L + L S R GE I +++ I Sbjct: 531 KSGDKYLAHARGKSNAPAVFMGSNGRSYALESHTLPSARSQGEPITGRLNITAGSQITHV 590 Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVA 662 + + L+ S G F+ + +++++ + GK L + ++ + V + D + Sbjct: 591 VMGEEEQTWLISSDAGYGFVCKGADLLSKNKNGKALLTLPENSQVMNPEAVSDLESDEIL 650 Query: 663 VVGENRKLLIFSIDQIPEMSRGKG---VRLQSYKDGGISDVIC--FKICEGLTWIDSAG- 716 + ++L+F I +P++ +GKG + + + + + + + +G T AG Sbjct: 651 AITNEGRMLLFPIKDLPQLGKGKGNKIINIPAARSKSREEFLSHLLPLPQGATITLYAGK 710 Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746 R DL + G+RG GSL+P+G R Sbjct: 711 RKLGLKPTDLDNFRGERGRRGSLLPRGLQR 740 >gi|59712834|ref|YP_205610.1| DNA topoisomerase IV subunit A [Vibrio fischeri ES114] gi|59480935|gb|AAW86722.1| DNA topoisomerase IV, subunit A [Vibrio fischeri ES114] Length = 758 Score = 507 bits (1306), Expect = e-141, Method: Compositional matrix adjust. Identities = 273/750 (36%), Positives = 443/750 (59%), Gaps = 23/750 (3%) Query: 9 SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68 S + E V+ + LR E+ YL Y++ I +RA+P + DG KPV RRII+AMSE+GL Sbjct: 2 STEMSLEGVEQLPLRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61 Query: 69 GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAA 127 A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S A Sbjct: 62 NAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFA 121 Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187 A RYTE+++++ A+++L + + VD++ ++ EP + PS+ P++L NG +GIAVGM Sbjct: 122 AMRYTESKLSKFADVLLGEIGQGTVDWQPNFDGTMKEPTILPSRLPHILLNGITGIAVGM 181 Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247 AT IP HNV+E+ A + L++NP+ ++++++++ GPD+PT I+ I + YR GR Sbjct: 182 ATDIPPHNVREVANATVHLLENPKADLDEVMDFVKGPDYPTKAEIISPSSEIKKIYRSGR 241 Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307 G ++RA W EE IV+T +P+QV S+L+E+IA + AK++P+++D+RDES Sbjct: 242 GSIKMRAVWHKEE-----GDIVITALPHQVSGSKLLEQIANQMRAKKLPMVDDLRDESDH 296 Query: 308 D--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365 + RIV+ P++ +D + LM +F +D+E + +N+N++ + + PQV L IL EW+ Sbjct: 297 ENPTRIVIVPRSNRVDAEPLMNHLFASTDLEKSYRVNLNMIGLDQRPQVKGLVSILSEWI 356 Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425 RR + +R R+ + R+ IL+GLL AYLNIDE+I IIR ED PK +++RF L+E Sbjct: 357 EFRRTTVRKRLQHRLDKVLARLHILEGLLAAYLNIDEVIEIIRTEDDPKHELMTRFDLSE 416 Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485 Q +AIL ++LR L KLEE +I+ E D L E++ ++ LL S ++ I EI E Sbjct: 417 KQAEAILEIKLRQLAKLEEIKIRGEQDELAKERDYLEKLLGSERRLNTLIKKEILADAEK 476 Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545 F RR+ E + A KA ++ +I E ITVV+S++GWIR K H VD + L++ Sbjct: 477 FGDD-----RRSPLVERAEA-KAMTERDLIPSEAITVVLSDKGWIRHAKGHDVDPTTLNY 530 Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605 K GD + + + ++G++Y L + L S R GE I +++ I Sbjct: 531 KSGDKYLAHARGKSNAPAVFMGSNGRSYALESHTLPSARSQGEPITGRLNITAGSQITHV 590 Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVA 662 + + L+ S G F+ + +++++ + GK L + ++ + V + D + Sbjct: 591 VMGEEEQTWLISSDAGYGFVCKGADLLSKNKNGKALLTLPENSQVMNPEAVSDLESDEIL 650 Query: 663 VVGENRKLLIFSIDQIPEMSRGKG---VRLQSYKDGGISDVIC--FKICEGLTWIDSAG- 716 + ++L+F I +P++ +GKG + + + + + + + +G T AG Sbjct: 651 AITNEGRMLLFPIKDLPQLGKGKGNKIINIPAARSKSREEFLSHLLPLPQGATITLYAGK 710 Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746 R DL + G+RG GSL+P+G R Sbjct: 711 RKLGLKPTDLDNFRGERGRRGSLLPRGLQR 740 >gi|83721285|ref|YP_441495.1| DNA topoisomerase IV subunit A [Burkholderia thailandensis E264] gi|257139821|ref|ZP_05588083.1| DNA topoisomerase IV subunit A [Burkholderia thailandensis E264] gi|83655110|gb|ABC39173.1| DNA topoisomerase IV, A subunit [Burkholderia thailandensis E264] Length = 772 Score = 507 bits (1306), Expect = e-141, Method: Compositional matrix adjust. Identities = 291/729 (39%), Positives = 427/729 (58%), Gaps = 34/729 (4%) Query: 23 RFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEV 82 R+A E +YL YA+S +K RA+PD+ DG KPV RRI++AM+EMGL A KSAR+VG+V Sbjct: 24 RYA-ERQYLDYAVSVVKGRALPDVSDGQKPVQRRILYAMNEMGLGDNAKPVKSARVVGDV 82 Query: 83 IGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAEL 142 +GK HPHGDQS YD+LVRLAQ F RYPLI GQGNFG+ DGD AAA RYTEAR+T +A+L Sbjct: 83 LGKYHPHGDQSAYDALVRLAQDFSMRYPLIDGQGNFGSRDGDGAAAMRYTEARLTPIAKL 142 Query: 143 ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEA 202 +L +DE VDF Y+ EP + P++ P +L NG SGIAVG+AT IPSHN++E+ A Sbjct: 143 LLDEIDEGTVDFMPNYDGSFDEPKLLPARLPFVLLNGASGIAVGLATEIPSHNLREVAAA 202 Query: 203 ALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVG 262 A+ALI +P + +L++ + GPDFP GG I+ S I +Y GRG +VRARW +E++ Sbjct: 203 AVALIRHPALPHAELMQLVPGPDFPGGGQIISSDAEISAAYETGRGSLKVRARWKIEDLA 262 Query: 263 RGSWCIVVTEIPYQVQKSRLIEKIAELIIAK------------------RIPLLEDIRDE 304 RG W +VVTE+P +++E+I EL K + LL+ +RDE Sbjct: 263 RGQWQLVVTELPPNTSCQKVLEEIEELTNPKLKAGKKTLTQEQINTKKTMLDLLDAVRDE 322 Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362 S +D VR+V PK R++D + S+ + +E+ LN+ ++ P L IL Sbjct: 323 SGKDAPVRLVFEPKTRTIDQTEFVNSLLAHTSLESNAALNLVMIGEDGRPAQKGLASILG 382 Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422 EW+ R+ + RR R+ ++ R+ IL+G +I +LNIDE+I IIR D+PK ++S F Sbjct: 383 EWVRFRQATVTRRCRHRLGKVNDRIHILEGRMIVFLNIDEVIRIIREADEPKAALISAFG 442 Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482 LTE Q D IL +RLR L +LE+ +I+ EL+ L AEK K++ LL N+ A + + Sbjct: 443 LTERQADDILEIRLRQLARLEKIKIEKELEELRAEKAKLEELLA------NESAMKRLMI 496 Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542 KEI + + G R T + + +AT +A + EP+TVV+S +GW+R+LK H +D ++ Sbjct: 497 KEIEADAKQYGDERRTLIQQEK--RATF-EAKVVDEPVTVVVSQKGWVRALKGHGLDPAS 553 Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602 FK GD L A T D ++ + G+ Y++ L GRG G + LI+L + Sbjct: 554 FSFKAGDGLYAAFQCRTPDTLIAWGSTGRVYSVAVQVLPGGRGDGVPVTSLIELESGSHL 613 Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD--H 660 + F + LL+ SS G FI + ++++ + GK+F+ + + + V D Sbjct: 614 LHYFAAPAEQPLLLASSNGFGFIAKIGDMVSRVKAGKSFMTIDTGAAPLAPMPVLPDASQ 673 Query: 661 VAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719 VA + +LL+F +D++ +S G+GV L + D + V I + GR Sbjct: 674 VACLSSGGRLLVFGMDEMKTLSGGGRGVILMAL-DAKETLVQALAIDAAGVVLTGTGRGG 732 Query: 720 NRSENDLLG 728 E L G Sbjct: 733 KAQEEALAG 741 >gi|167580263|ref|ZP_02373137.1| DNA topoisomerase IV subunit A [Burkholderia thailandensis TXDOH] Length = 772 Score = 507 bits (1306), Expect = e-141, Method: Compositional matrix adjust. Identities = 290/729 (39%), Positives = 427/729 (58%), Gaps = 34/729 (4%) Query: 23 RFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEV 82 R+A E +YL YA+S +K RA+PD+ DG KPV RRI++AM+EMGL A KSAR+VG+V Sbjct: 24 RYA-ERQYLDYAVSVVKGRALPDVSDGQKPVQRRILYAMNEMGLGDNAKPVKSARVVGDV 82 Query: 83 IGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAEL 142 +GK HPHGDQS YD+LVRLAQ F RYPLI GQGNFG+ DGD AAA RYTEAR+T +A+L Sbjct: 83 LGKYHPHGDQSAYDALVRLAQDFSMRYPLIDGQGNFGSRDGDGAAAMRYTEARLTPIAKL 142 Query: 143 ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEA 202 +L +DE VDF Y+ EP + P++ P +L NG SGIAVG+AT IPSHN++E+ A Sbjct: 143 LLDEIDEGTVDFMPNYDGSFDEPKLLPARLPFVLLNGASGIAVGLATEIPSHNLREVAAA 202 Query: 203 ALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVG 262 A+ALI +P + +L++ + GPDFP GG I+ S I +Y GRG +VRARW +E++ Sbjct: 203 AVALIRHPALPHAELMQLVPGPDFPGGGQIISSDAEISAAYETGRGSLKVRARWKIEDLA 262 Query: 263 RGSWCIVVTEIPYQVQKSRLIEKIAELIIAK------------------RIPLLEDIRDE 304 RG W +VVTE+P +++E+I EL K + LL+ +RDE Sbjct: 263 RGQWQLVVTELPPNTSCQKVLEEIEELTNPKLKAGKKTLTQEQINTKKTMLDLLDAVRDE 322 Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362 S +D VR+V PK R++D + S+ + +E+ LN+ ++ P L IL Sbjct: 323 SGKDAPVRLVFEPKTRTIDQTEFVNSLLAHTSLESNAALNLVMIGEDGRPAQKGLASILG 382 Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422 EW+ R+ + RR R+ ++ R+ IL+G +I +LNIDE+I IIR D+PK ++S F Sbjct: 383 EWVRFRQATVTRRCRHRLGKVNDRIHILEGRMIVFLNIDEVIRIIREADEPKAALISAFG 442 Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482 LTE Q D IL +RLR L +LE+ +I+ EL+ L AEK K++ LL N+ A + + Sbjct: 443 LTERQADDILEIRLRQLARLEKIKIEKELEELRAEKAKLEELLA------NESAMKRLMI 496 Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542 +EI + + G R T + + +AT +A + EP+TVV+S +GW+R+LK H +D ++ Sbjct: 497 REIEADAKQYGDERRTLIQQEK--RATF-EAKVVDEPVTVVVSQKGWVRALKGHGLDPAS 553 Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602 FK GD L A T D ++ + G+ Y++ L GRG G + LI+L + Sbjct: 554 FSFKAGDGLYAAFQCRTPDTLIAWGSTGRVYSVAVQVLPGGRGDGVPVTSLIELESGSHL 613 Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD--H 660 + F + LL+ SS G FI + ++++ + GK+F+ + + + V D Sbjct: 614 LHYFAAPAEQPLLLASSNGFGFIAKIGDMVSRVKAGKSFMTIDTGAAPLAPMPVLPDASQ 673 Query: 661 VAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719 VA + +LL+F +D++ +S G+GV L + D + V I + GR Sbjct: 674 VACLSSGGRLLVFGMDEMKTLSGGGRGVILMAL-DAKETLVQALAIDAAGVVLTGTGRGG 732 Query: 720 NRSENDLLG 728 E L G Sbjct: 733 KAQEESLAG 741 >gi|262042306|ref|ZP_06015471.1| topoisomerase IV subunit A [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259040370|gb|EEW41476.1| topoisomerase IV subunit A [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 752 Score = 507 bits (1306), Expect = e-141, Method: Compositional matrix adjust. Identities = 270/734 (36%), Positives = 439/734 (59%), Gaps = 28/734 (3%) Query: 23 RFALEE----RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78 R AL E YL Y++ I +RA+P + DG KPV RRI++AMSE+GL+ A FKKSAR Sbjct: 7 RLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSART 66 Query: 79 VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMT 137 VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S AA RYTE+R++ Sbjct: 67 VGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLS 126 Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197 + AEL+L + + VD+ ++ EP + P++ PN+L NGT+GIAVGMAT IP HN++ Sbjct: 127 KYAELLLSELGQGTVDWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLR 186 Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257 E+ +AA+ LI+ P+ ++++LL+ + GPDFPT I+ SR I + Y+ GRG R+RA W Sbjct: 187 EVAKAAITLIEQPKTTLDELLDIVQGPDFPTEAEIITSRAEIRKIYQNGRGSVRMRAVWS 246 Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFP 315 E+ +V++ +P+QV ++++E+IA + K++P+++D+RDES + R+V+ P Sbjct: 247 KED-----GAVVISALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVP 301 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 ++ +D + +M +F +D+E + +N+N++ + P V L IL EWL RR+ + RR Sbjct: 302 RSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRR 361 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435 + R++ + +R+ IL+GLL+A+LNIDE+I IIR ED+PKP ++SRF ++E Q +AIL L+ Sbjct: 362 LNHRLEKVLKRLHILEGLLVAFLNIDEVIEIIRTEDEPKPALMSRFGISETQAEAILELK 421 Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495 LR L KLEE +I+ E L E++++ ++L S ++ N + E++ + F R Sbjct: 422 LRHLAKLEEMKIRGEQSELEKERDQLQAILASERKMNNLLKKELQADADAFGDD-----R 476 Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555 R+ E A KA + M+ EP+T+V+S GW+RS K H +D L +K GDS K + Sbjct: 477 RSPLHEREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAQGLSYKAGDSWKASA 535 Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615 + ++ + T G++Y + L S RG GE + + L + + KLL Sbjct: 536 KGKSNQPVVFIDTTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVEHMLMESDDQKLL 595 Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--KLVVKVTGDHVAVVGENRKLLIF 673 + S G F+ ++++A R GK + + + LV++ + + + ++L+F Sbjct: 596 MASDAGYGFVCTFNDLVARNRAGKALITLPDNAHVMPPLVIEDESNMLLAITAAGRMLMF 655 Query: 674 SIDQIPEMSRGKGVRLQSYKDG-------GISDVICFKICEGLTWIDSAGRSYNRSENDL 726 + +P++S+GKG ++ S G++ + LT I R +L Sbjct: 656 PVSDLPQLSKGKGNKIISIPAAEAASGQDGLAHLFVLPPQSTLT-IHVGKRKIKLRPEEL 714 Query: 727 LGWLGKRGGVGSLV 740 G+RG GSL+ Sbjct: 715 QKVTGERGRRGSLM 728 >gi|166712712|ref|ZP_02243919.1| DNA topoisomerase IV subunit A [Xanthomonas oryzae pv. oryzicola BLS256] Length = 747 Score = 507 bits (1306), Expect = e-141, Method: Compositional matrix adjust. Identities = 276/735 (37%), Positives = 431/735 (58%), Gaps = 21/735 (2%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 + LR E YL Y++ + +RA+P L DG KPV RRII AMSE+GL+ A KKSAR V Sbjct: 15 LPLREYAERAYLDYSMYVVLDRALPFLGDGLKPVQRRIIFAMSELGLNAAAKPKKSARTV 74 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQ 138 G+VIGK HPHGD + Y++LV +AQPF RY LI GQGNFG+ D S AA RYTE+++T Sbjct: 75 GDVIGKYHPHGDSACYEALVLMAQPFSYRYRLIEGQGNFGSTDDPKSFAAMRYTESKLTP 134 Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198 +AE++L + + D+ ++ EP P++ P+LL NGT+GIAVGMAT +P HN+ E Sbjct: 135 IAEVLLGELAQGTTDWAPNFDGTLEEPTWLPARLPHLLLNGTTGIAVGMATDVPPHNLNE 194 Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258 I A L L+DNP+ ++ +L E+++GPD+PT I+ + Y G G R RA + Sbjct: 195 IVSALLRLLDNPDATVAELCEHVLGPDYPTTAEIITPAADLRAIYETGHGSVRARATYKK 254 Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES--AEDVRIVLFPK 316 E IV+ +PYQV S++IE+IA+ + AK++P LEDIRDES VR+VL P+ Sbjct: 255 EHAN-----IVIDALPYQVSPSKVIEQIAQQMRAKKLPWLEDIRDESDHTSPVRVVLVPR 309 Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376 + +D + LM +F+ +D+E + N+NV+ + PQV L +L EWL R + + RR Sbjct: 310 SNRVDAEQLMGHLFVTTDLERSYRCNLNVIGLDGRPQVKNLRQLLSEWLTFRSDTVTRRL 369 Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRL 436 + R+Q ++RR+ +L+GLLIA+LN+DE+I I+R+ED+PKPV++SRF+L+E Q + IL +L Sbjct: 370 NHRLQKVERRLHLLEGLLIAFLNLDEVIRIVRSEDEPKPVLISRFALSEEQAEYILETKL 429 Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496 R L +LEE +I+ E + L E+ +I ++L S + I E+ + F + RR Sbjct: 430 RQLARLEEMKIRGEQEALAKERAQIMAILESKTKLKKLIKDELTADAKKFGDA-----RR 484 Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALH 556 + + A +A + M+ EP+TVV+S +GW+R+ K H VD + + +++GD L A+ Sbjct: 485 SPLVQRG-AAQAIDETEMVASEPMTVVLSEKGWVRAAKGHEVDPAGMSYRDGDGLLAAVR 543 Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLV 616 + +T ++ L ++G+AY+ L S RG+GE + D+ + ++ Sbjct: 544 SRSTHQVAFLDSEGRAYSTAVHTLPSARGNGEPLTGRFSPASGAAFQVMASADNATRFVL 603 Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---DHVAVVGENRKLLIF 673 SS G F+ + + GK L +++ + +V+ D + V LL Sbjct: 604 ASSHGYGFVTRFENLTGRNKAGKAMLNLTTGSHVLTPAQVSNPQTDRIVAVTSAGNLLAV 663 Query: 674 SIDQIPEMSRGKG---VRLQSYKDGGISDVICFKICEGLT-WIDSAGRSYNRSENDLLGW 729 ++PE+ +GKG + + K G V + G T + S R+ + S DL + Sbjct: 664 PATEVPELDKGKGNKIIEIPKAKLGTERVVAVVAVAPGNTLLVRSGARTMSLSFKDLDTY 723 Query: 730 LGKRGGVGSLVPKGF 744 +G R G+L+P+G+ Sbjct: 724 VGARASRGALLPRGW 738 >gi|71277810|ref|YP_270822.1| DNA topoisomerase IV subunit A [Colwellia psychrerythraea 34H] gi|71143550|gb|AAZ24023.1| DNA topoisomerase IV, A subunit [Colwellia psychrerythraea 34H] Length = 769 Score = 507 bits (1306), Expect = e-141, Method: Compositional matrix adjust. Identities = 269/745 (36%), Positives = 443/745 (59%), Gaps = 25/745 (3%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 + V+ V LR EE YL Y++ I +RA+P + DG KPV RRI++AMSE+GL A +KK Sbjct: 10 DGVEQVPLRRFTEEAYLNYSMYVIMDRALPHIGDGLKPVQRRIVYAMSELGLSATAKYKK 69 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTE 133 SAR VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S AA RYTE Sbjct: 70 SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 129 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 +R+++ +E++L + + VD++ ++ EP P++ P++L NG +GIAVGMAT IP Sbjct: 130 SRLSRFSEVLLAELGQGTVDWQPNFDGTMQEPKTLPARLPHILLNGITGIAVGMATDIPP 189 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HNV+E+ +A + LI+NP+ + LLE++ GPD+PT I+ + I + Y+ GRG R+R Sbjct: 190 HNVREVADACVHLIENPKAEVSDLLEFVKGPDYPTDAEIITPKAEIEKIYQTGRGSIRMR 249 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRI 311 A + VE+ IV+T +P+Q +++E+IA + AK++P++ D+RDES + VR+ Sbjct: 250 AVYDVEQ-----GDIVITSLPHQASGGKILEQIAGQMTAKKLPMVVDLRDESDHENPVRL 304 Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371 V+ P++ +D + LM+ +F +D+E + +N+N++ + P V L IL EWL +RRE Sbjct: 305 VIIPRSNRVDVEQLMQHLFASTDLEKSYRVNINMIGLDNRPAVKNLLVILSEWLEYRRET 364 Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431 + RR +R+ + R+ IL GLL+AYLNIDE+I IIR D PK ++SRF+L++ Q +I Sbjct: 365 VRRRLQYRLDKVLARLHILDGLLVAYLNIDEVIEIIRGYDDPKAELMSRFALSDTQAHSI 424 Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491 L ++LR L KLEE +I++E D L E++ ++ +LNS + + EI E + Sbjct: 425 LEIKLRQLAKLEEIKIRAEQDELRIEQDYLEKILNSKARMSTLMKKEILAAAEQYGDD-- 482 Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551 RR+ E S + KA ++ ++ E +TVV+S++GW R K H +D ++L +K GD Sbjct: 483 ---RRSQLVERSES-KALTEKDLVPSEAVTVVVSDKGWARCAKGHDIDPTSLSYKAGDGY 538 Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611 A + ++ + +DG+A+T A L + R GE + +L+ + V + + D Sbjct: 539 LCASKGRSNRPVVFIGSDGRAFTTDAHTLPTARSQGEPLTGRFNLSTGKTFVHSIMSDDD 598 Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVAVVGENR 668 + L+VS G F+ ++++ + GK + + K+ + + + D+ + Sbjct: 599 AQYLLVSDAGYGFVSSFGDMVSRNKNGKALISLPEAAKVLMPQCINNIENDNCLTITSEG 658 Query: 669 KLLIFSIDQIPEMSRGKGVRL------QSYKDGGISDVICFKICEGLTWIDSAG-RSYNR 721 ++L+F + +P +S+GKG ++ +S ++C I EG AG R Sbjct: 659 RMLVFPVKNLPVLSKGKGNKIINIPSARSKLREEFVSLLCI-IPEGAAITLHAGKRKLTL 717 Query: 722 SENDLLGWLGKRGGVGSLVPKGFPR 746 D+ + G+RG G+ +P+G R Sbjct: 718 KAADIEHYKGERGRRGNKLPRGLQR 742 >gi|90415524|ref|ZP_01223458.1| DNA topoisomerase IV, A subunit [marine gamma proteobacterium HTCC2207] gi|90332847|gb|EAS48017.1| DNA topoisomerase IV, A subunit [marine gamma proteobacterium HTCC2207] Length = 750 Score = 507 bits (1306), Expect = e-141, Method: Compositional matrix adjust. Identities = 274/741 (36%), Positives = 442/741 (59%), Gaps = 32/741 (4%) Query: 26 LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85 +E+ YL Y++ I +RA+P + DG KPV RRII+AMSE+GL A +KKSAR VG+VIGK Sbjct: 21 VEQAYLDYSMYVILDRALPHIGDGLKPVQRRIIYAMSELGLKASAKYKKSARTVGDVIGK 80 Query: 86 LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQVAELIL 144 HPHGD + Y+++V +AQPF RYPL+ GQGN+G+ D S AA RYTE+++++ A+ +L Sbjct: 81 FHPHGDSAAYEAMVLMAQPFSYRYPLVDGQGNWGSADDPKSFAAMRYTESKLSKYADALL 140 Query: 145 QGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAAL 204 + + ++R ++ EP + P++ PN+L NGT+GIAVGMAT IP HN+ E+ A L Sbjct: 141 SELGQGTANWRPNFDATMDEPEILPARVPNVLLNGTTGIAVGMATDIPPHNLNEVVSACL 200 Query: 205 ALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRG 264 ++DNP+ + +L+E+I PD+PT I+ S++ I Y GRG ++RA W E+ Sbjct: 201 HMLDNPKADVAELMEFIKAPDYPTDAEIITSQKDIQNVYETGRGSIKMRAIWHRED---- 256 Query: 265 SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFPKNRSLDP 322 I+VT +P+Q S+++E+IA + K++P++ED+RDES + R+V+ P++ +D Sbjct: 257 -GDIIVTALPFQASGSKILEQIAAQMRNKKLPMVEDLRDESDHENPTRLVITPRSNRVDV 315 Query: 323 DLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQA 382 D LM+ +F D+E + +N+N++ + P VM L I+K+WL R +V RR S+R++ Sbjct: 316 DALMDHLFATCDLERSYRVNLNIIGINGKPGVMNLRQIIKDWLLFRTDVTRRRLSYRLEK 375 Query: 383 IDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKL 442 +D+R+ +L GLLIA+LNIDE+I +IR ED+PKP +++RF L++ Q + IL+ +LR L +L Sbjct: 376 VDKRLHLLDGLLIAFLNIDEVIHLIRTEDEPKPALIARFGLSDIQAEYILDTKLRQLARL 435 Query: 443 EEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEV 502 EE++I++E D L EK +++ +L S + + E++ E F RR+ V Sbjct: 436 EEFKIRAEQDELAKEKAELELILGSETRLKTLVKKELKAAAEEFGDE-----RRSPL--V 488 Query: 503 SRADKATL-QQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTD 561 +R + + ++ ++ EPITVV+S++GWIR K H +D + L +K GD A + Sbjct: 489 ARGEASAFNEKDLLTAEPITVVLSDKGWIRGAKGHDIDPTTLSYKSGDKFLSAACGRSNQ 548 Query: 562 RILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKG 621 + L + G+ Y L L S RG GE +++ + K+L+ + G Sbjct: 549 NVFLQDSVGRFYALGGHTLPSARGQGEPATGRLNVASGALFTDVIMGADDQKVLLGTDAG 608 Query: 622 NAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH---VAVVGENRKLLIFSIDQI 678 FI + ++ R GK + + K+ L K+ D +A V +LL+F I ++ Sbjct: 609 YGFIGKIGDLYTKNRAGKAVVSLPKGAKI-LSPKMVNDANALIAAVSNEGRLLVFPIAEL 667 Query: 679 PEMSRGK--------GVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY-NRSENDLLGW 729 PE++RGK G RLQ+ ++ I + I EG + + +G+ Y DL + Sbjct: 668 PELARGKGNKIINIPGSRLQAREEFVIDYGV---ISEGDSLVVHSGKRYLVMKAKDLEHY 724 Query: 730 LGKRGGVGSLVPKGFPRSGKF 750 G+RG G +P+GF + K Sbjct: 725 SGERGRRGHKLPRGFQKVDKL 745 >gi|292492463|ref|YP_003527902.1| DNA topoisomerase IV, subunit alpha [Nitrosococcus halophilus Nc4] gi|291581058|gb|ADE15515.1| DNA topoisomerase IV, A subunit [Nitrosococcus halophilus Nc4] Length = 743 Score = 507 bits (1306), Expect = e-141, Method: Compositional matrix adjust. Identities = 282/747 (37%), Positives = 442/747 (59%), Gaps = 27/747 (3%) Query: 10 NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69 NT +EE SL E+ YL Y++ I +RA+P L DG KPV RRII+AMSE+GL Sbjct: 2 NTDIEER----SLGDFAEKAYLDYSMYVILDRALPHLADGLKPVQRRIIYAMSELGLSAS 57 Query: 70 AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAA 128 A +KKSAR VG+V+GK HPHGD + Y+++V +AQ F RYPLI GQGN+G+ D S AA Sbjct: 58 AKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQQFSYRYPLIEGQGNWGSPDDPKSFAA 117 Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188 RYTEAR+ AEL+L + + V++ ++ E + P++ P++L NG +GIAVGMA Sbjct: 118 MRYTEARLAPFAELLLSEIGQGTVEWVPNFDGTLREVSLLPARVPHVLLNGATGIAVGMA 177 Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248 T IP HN+ E+ A L L++ P+ ++ +L + + GPD+PT I+ +++ Y+ G G Sbjct: 178 TDIPPHNLGEVVAACLRLLERPKATVAELCDCLPGPDYPTKAEIITPPTELLKMYQTGHG 237 Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308 R+RA + +E +G IV+ +PYQV +R++E+IA+ + AK++P+L D+RDES + Sbjct: 238 SVRMRACYTLE---KGD--IVINALPYQVSGARILEQIAQQMQAKKLPMLVDLRDESDHE 292 Query: 309 --VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366 R+VL P+ R ++ + +M +F +D+E + +N+NV+ + PQV L +L EWL Sbjct: 293 NPTRLVLVPRTRRVEVETVMSHLFATTDLERSYRVNLNVIGLDGRPQVKNLRDLLAEWLH 352 Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426 R E++ RR R++ + R++IL GLLIAYLNIDE+IAIIR E++PKPV+++RF L++ Sbjct: 353 FRIEIIRRRLQHRLEKVQDRLQILAGLLIAYLNIDEVIAIIRKEEEPKPVLMARFELSDR 412 Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486 Q +AIL L+LR L +LEE +I++E L AE+++++ +L S +Q + E+ E F Sbjct: 413 QAEAILELKLRHLMRLEETKIRAEDKALAAERKRLEKILGSERQIKGLLRKELVADVEKF 472 Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546 + RR+ E A A +QA++ EPITVV+S +GW+R+ KSH VD + L ++ Sbjct: 473 GDA-----RRSPIVERPSA-TALDEQALLPAEPITVVLSEKGWVRAAKSHEVDPTTLSYR 526 Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606 GD + + + + L + G++YTLPA L S RG GE + + + + V Sbjct: 527 TGDGYRASARGRSNQPAIFLDSTGRSYTLPAHGLPSARGQGEPLSGHLQVVPGAEFVAVL 586 Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---DHVAV 663 + + L+ S G F+ + + A R GK L +S+ + V V + +A+ Sbjct: 587 LAEPEIFYLMASDAGYGFLCQAKHLYAKNRAGKAVLNLSAGARALPPVPVADIEVEQIAI 646 Query: 664 VGENRKLLIFSIDQIPEMSRGKGVRL------QSYKDGGISDVICFKICEGLTWIDSAGR 717 +LL+F + ++P M+RGKGV+L +S + + G I + R Sbjct: 647 ATNTGRLLLFPLGELPIMTRGKGVKLIHIPSPRSAQRQEAVRALAVVPPGGALQIFAGRR 706 Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGF 744 DL + G+R G +P+GF Sbjct: 707 HLTLKSEDLEFYRGERARRGHTLPRGF 733 >gi|134296545|ref|YP_001120280.1| DNA topoisomerase IV subunit A [Burkholderia vietnamiensis G4] gi|134139702|gb|ABO55445.1| DNA topoisomerase IV subunit A [Burkholderia vietnamiensis G4] Length = 773 Score = 507 bits (1306), Expect = e-141, Method: Compositional matrix adjust. Identities = 281/704 (39%), Positives = 423/704 (60%), Gaps = 36/704 (5%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 + A++L E+ YL+YA+S +K RA+PD+ DG KPV RRI+ AM+EMGL A KS Sbjct: 16 DTDALTLGNYAEQAYLSYAVSVVKSRALPDVCDGQKPVQRRILFAMNEMGLGPDAKPVKS 75 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 AR+VG+V+GK HPHGDQS YD+LVRLAQ F RYPLI GQGNFG+ DGD AAA RYTEAR Sbjct: 76 ARVVGDVLGKYHPHGDQSAYDALVRLAQDFSLRYPLIDGQGNFGSRDGDGAAAMRYTEAR 135 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 +T +++L+L +D+ VDF Y+ EP PS+ P +L NG SGIAVG+AT IPSHN Sbjct: 136 LTPISKLLLDEIDQGTVDFMPNYDGSFEEPKTLPSRMPFVLLNGASGIAVGLATEIPSHN 195 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 ++E+ AA+ALI NP+++ +L+ I GPDFP GG I+ S I +Y GRG +VRA+ Sbjct: 196 LREVAAAAVALIRNPKLTHAELMNLIPGPDFPGGGQIISSDAEISAAYETGRGSLKVRAK 255 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAK------------------RIPL 297 W +E++ RG W +VVTE+P +++E+I EL K + L Sbjct: 256 WKIEDLARGQWQLVVTELPPNTSGQKVLEEIEELTNPKLKLGKKTLTPEQLNTKKAMLDL 315 Query: 298 LEDIRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVM 355 L+ +RDES ++ VR+V PK+R++D + ++ + +E+ LN+ ++ P Sbjct: 316 LDAVRDESGKEAAVRLVFEPKSRTIDQTEFVNTLLAYTSLESNATLNLVMIGADGRPGQK 375 Query: 356 PLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP 415 L IL EW+ +R+ + RR R+ +D R+ IL+G +I +LNIDE+I IIR D+PK Sbjct: 376 GLLTILDEWVKYRQSTMTRRCRHRLAKVDDRIHILEGRMIVFLNIDEVIRIIRESDEPKS 435 Query: 416 VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQI 475 ++S F LTE Q + IL +RLR L +LE+ +I+ ELD L EK K++ LL N+ Sbjct: 436 ALMSAFGLTERQAEDILEIRLRQLARLEKIKIEKELDALRDEKAKLEELLA------NES 489 Query: 476 ACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKS 535 A + +KEI + + G R T + + +AT +A + EP+TVV+S +GW+R+LK Sbjct: 490 AMKRLMIKEIEADAKQYGDDRRTLIQQEK--RATF-EAKVVDEPVTVVVSQKGWVRALKG 546 Query: 536 HSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLID 595 H +D + FK GD L A T DR++ + G+ Y++ L GRG G + LI+ Sbjct: 547 HGLDPAGFSFKAGDGLYAAFQCRTPDRLIAWGSSGRVYSVDVSVLPGGRGDGVPVTSLIE 606 Query: 596 LNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE----EKMK 651 L ++ + +LL+ SS G F+ + ++++ + GK+F+ + + M Sbjct: 607 LESGSHLMHYYAAPVDQQLLLASSNGFGFLAKVGDMVSRVKAGKSFMTIDAGAVPLAPMP 666 Query: 652 LVVKVTGDHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKD 694 ++ T VA + +LL+F++D++ +S G+GV L + D Sbjct: 667 VLPNAT--QVACLSSGGRLLVFAMDEMKTLSGGGRGVTLMALDD 708 >gi|157148585|ref|YP_001455904.1| DNA topoisomerase IV subunit A [Citrobacter koseri ATCC BAA-895] gi|157085790|gb|ABV15468.1| hypothetical protein CKO_04412 [Citrobacter koseri ATCC BAA-895] Length = 752 Score = 507 bits (1306), Expect = e-141, Method: Compositional matrix adjust. Identities = 257/676 (38%), Positives = 421/676 (62%), Gaps = 20/676 (2%) Query: 23 RFALEE----RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78 R AL E YL Y++ I +RA+P + DG KPV RRI++AMSE+GL+ A FKKSAR Sbjct: 7 RLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSART 66 Query: 79 VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMT 137 VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S AA RYTE+R++ Sbjct: 67 VGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLS 126 Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197 + AE++L + + D+ ++ EP + P++ PN+L NGT+GIAVGMAT IP HN++ Sbjct: 127 KYAEVLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLR 186 Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257 E+ +AA+ LI+ P+ ++E++L+ + GPD+PT I+ SR I + Y GRG R+RA W Sbjct: 187 EVAKAAITLIEQPKTTLEQVLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWK 246 Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFP 315 E+ +V+T +P+QV +R++E+IA + K++P+++D+RDES + R+V+ P Sbjct: 247 KED-----GAVVITALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVP 301 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 ++ +D + +M +F +D+E + +N+N++ + P V L IL EWLA RR+ + RR Sbjct: 302 RSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEWLAFRRDTVRRR 361 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435 ++R++ + +R+ IL+GLL+A+LNIDE+I IIR+ED+PKP ++SRF +TE Q +AIL L+ Sbjct: 362 LNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRHEDEPKPALMSRFGITETQAEAILELK 421 Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495 LR L KLEE +I+ E D L E++++ +L S ++ + E++ + + R Sbjct: 422 LRHLAKLEEMKIRGEQDELAKERDQLQGILASERKMNTLLKKELQADSDAYGDD-----R 476 Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555 R+ E A KA + M+ EP+T+V+S GW+RS K H +D L++K GDS K + Sbjct: 477 RSPLREREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAQGLNYKSGDSWKASA 535 Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615 + ++ + T G++Y + L S RG GE + + L + + KLL Sbjct: 536 KGKSNQPVVFIDTTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVEHMLMEGDEQKLL 595 Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--KLVVKVTGDHVAVVGENRKLLIF 673 + S G F+ ++++A R GK + + + +V++ D + + ++L+F Sbjct: 596 MASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDETDMLLAITAAGRMLMF 655 Query: 674 SIDQIPEMSRGKGVRL 689 + +P++S+GKG ++ Sbjct: 656 PVSDLPQLSKGKGNKI 671 >gi|184156534|ref|YP_001844873.1| DNA topoisomerase IV subunit A [Acinetobacter baumannii ACICU] gi|183208128|gb|ACC55526.1| Type topoisomerase IV (DNA gyrase/topo IV) [Acinetobacter baumannii ACICU] Length = 739 Score = 507 bits (1306), Expect = e-141, Method: Compositional matrix adjust. Identities = 277/732 (37%), Positives = 439/732 (59%), Gaps = 21/732 (2%) Query: 27 EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86 E+ YL YA+ I +RA+P + DG KPV RRI++AMSE+GL KKSAR VG+V+GK Sbjct: 19 EQAYLNYAMYVIMDRALPHISDGLKPVQRRIVYAMSELGLKSSGKPKKSARTVGDVLGKY 78 Query: 87 HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQVAELILQ 145 HPHGD + Y+++V +AQPF RYPLI GQGN+G+ D S AA RYTEA+++ +EL+L Sbjct: 79 HPHGDSACYEAMVLMAQPFSYRYPLIEGQGNWGSPDDPKSFAAMRYTEAKLSAYSELLLS 138 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 + + +++D ++ EP+ P++ PN+L NGT+GIAVGMAT IP HN++E+ + +A Sbjct: 139 ELGQGTSEWQDNFDGSLKEPITLPARVPNILLNGTTGIAVGMATDIPPHNLREVVKGTIA 198 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265 LI NP+ S KL EYI PD PT I+ E +++ GRG +R+RA + +E+ Sbjct: 199 LIRNPQTSDGKLAEYIPAPDLPTKAEIITPPEELLKIQTTGRGSYRMRAVYTIEKNE--- 255 Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFPKNRSLDPD 323 IV+TE+PYQV S++I +IA+ + AK++PL+ D+RDES + R+V+ ++ +D + Sbjct: 256 --IVITELPYQVSGSKVITQIADQMQAKKLPLVVDVRDESDHENPTRLVIVLRSNRIDAE 313 Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383 +M +F +D+E+ + +N+N++ PQV + IL EW+ R++ + RR + + I Sbjct: 314 AVMSHLFATTDLESSYRVNLNMIGEDGRPQVKSIRRILLEWIEIRKKTVTRRLQYHLNRI 373 Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLE 443 ++R+ IL GLLIAYL+ID +I IIR ED+PKPV++ F++ E Q +AIL L+LR L KLE Sbjct: 374 EKRLHILAGLLIAYLDIDTVIRIIREEDQPKPVLMEHFNIDEIQAEAILELKLRHLAKLE 433 Query: 444 EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVS 503 E +I+ E D L A+ I L + + N I E++E + F RR+ V+ Sbjct: 434 EMEIRHEQDELSAKAAIIREQLENPESLKNLIIGELKEDAKKFGDE-----RRSPI--VA 486 Query: 504 RADKATL-QQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDR 562 RA+ + +Q ++ E +TVV+S GW+R+ K VD L+++ GD T R Sbjct: 487 RAEAVQIKEQDLMPAETVTVVLSEAGWVRAAKGADVDAENLNYRAGDQYLSHAVGKTNQR 546 Query: 563 ILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGN 622 + L G++Y LP NL S RG G+ + + + ++ D +L+ SS G Sbjct: 547 VYFLDETGRSYALPISNLPSARGLGDPLSSKLSPASGVSFIQVYLDDDESELIAASSAGY 606 Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEK-MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEM 681 F + ++ N + GKTFL V + K + L+ H+AV+ +LLI + ++P + Sbjct: 607 GFKTQTKQLDTNAKAGKTFLTVPDKAKALPLISAQNMTHLAVLSSAGRLLILDLVELPNL 666 Query: 682 SRGKGVRL-QSYKDGGISDVICFKICEGLTWIDSAGRSYNRSE-NDLLGWLGKRGGVGSL 739 ++GKG +L Q I + + E + + AG+ + + + +DL ++GKR G L Sbjct: 667 NKGKGNKLIQLEGKEQILSMTTLNLDEIIQVV--AGQQHLKLKGDDLQKYMGKRASKGQL 724 Query: 740 VPKGFPRSGKFL 751 +P+G+ ++ K L Sbjct: 725 LPRGYQKANKLL 736 >gi|226952331|ref|ZP_03822795.1| DNA topoisomerase IV, subunit A [Acinetobacter sp. ATCC 27244] gi|226836943|gb|EEH69326.1| DNA topoisomerase IV, subunit A [Acinetobacter sp. ATCC 27244] Length = 739 Score = 507 bits (1306), Expect = e-141, Method: Compositional matrix adjust. Identities = 276/731 (37%), Positives = 437/731 (59%), Gaps = 19/731 (2%) Query: 27 EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86 E+ YL YA+ I +RA+P + DG KPV RRI++AMSE+GL KKSAR VG+V+GK Sbjct: 19 EQAYLNYAMYVIMDRALPHISDGLKPVQRRIVYAMSELGLKSTGKPKKSARTVGDVLGKY 78 Query: 87 HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQVAELILQ 145 HPHGD + Y+++V +AQPF RYPL+ GQGN+G+ D S AA RYTEA+++ +EL+L Sbjct: 79 HPHGDSACYEAMVLMAQPFSYRYPLVEGQGNWGSPDDPKSFAAMRYTEAKLSAYSELLLS 138 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 + + +++D ++ EP+ P++ PN+L NGT+GIAVGMAT IP HN++E+ + +A Sbjct: 139 ELGQGTSEWQDNFDGSMKEPITLPARIPNILLNGTTGIAVGMATDIPPHNLREVVKGTIA 198 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265 LI NPE + EKL EYI PD PT I+ E +++ GRG +R+R+ + VE+ Sbjct: 199 LIRNPETTDEKLAEYIPAPDLPTKAEIITPPEELLKIQTTGRGSYRMRSIYTVEKNE--- 255 Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES--AEDVRIVLFPKNRSLDPD 323 IV+TE+PYQV S++I +IA+ +IAK++PL+ DIRDES R+V+ ++ +D + Sbjct: 256 --IVITELPYQVSGSKVITQIADQMIAKKLPLVADIRDESDHKNPTRLVIVLRSNRVDAE 313 Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383 +M +F +D+E+ + +N+N++ PQV + IL EW+ R++ + RR + + I Sbjct: 314 TVMSHLFATTDLESSYRVNLNMIGADGRPQVKSIRRILLEWIEIRKQTVTRRLQYHLTKI 373 Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLE 443 ++R+ IL GLLIAYL+ID +I IIR ED+PKPV++ F + E Q +AIL L+LR L KLE Sbjct: 374 EKRLHILAGLLIAYLDIDTVIRIIREEDQPKPVLMQHFGIDEIQAEAILELKLRHLAKLE 433 Query: 444 EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVS 503 E +I+ E + L A+ I L + + + I E++E + F RR+ V+ Sbjct: 434 EMEIRREQEELEAKAAVIREQLANPESLKSLIINELKEDAKKFGDD-----RRSPI--VA 486 Query: 504 RADKATL-QQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDR 562 RA+ + +Q ++ E +TVV+S GW+R+ K VD + L+++ GD T R Sbjct: 487 RAEAVQIREQDLMPAETVTVVLSEAGWVRAAKGADVDAANLNYRAGDQYLSHAVGKTNQR 546 Query: 563 ILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGN 622 + L G++Y LP +L S RG GE + + + V D +LLV SS G Sbjct: 547 VYFLDQKGRSYALPISSLPSARGLGEPLSSKLSPASGVSFIQVLVEDDANELLVASSNGY 606 Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEK-MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEM 681 F + +++ N + GK FL V + K + L+ HVA++ + +LLI + ++P + Sbjct: 607 GFKTQATQLDTNAKAGKAFLTVMEKAKALPLLPIQQATHVAILSSSGRLLIIDLAELPVL 666 Query: 682 SRGKGVRL-QSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740 ++GKG +L Q + I + + E + + + + +DL +LGKR G L+ Sbjct: 667 NKGKGNKLIQLDEKEQILSMTTLALDE-IIQVAAGQQHLKLKGDDLQKYLGKRATKGQLL 725 Query: 741 PKGFPRSGKFL 751 P+G+ ++ + Sbjct: 726 PRGYQKANRLF 736 >gi|145589084|ref|YP_001155681.1| DNA topoisomerase IV subunit A [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145047490|gb|ABP34117.1| DNA topoisomerase IV subunit A [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 793 Score = 507 bits (1306), Expect = e-141, Method: Compositional matrix adjust. Identities = 284/738 (38%), Positives = 420/738 (56%), Gaps = 36/738 (4%) Query: 12 LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71 L E+ ++L E YL YA+S +K RA+PD+ DG KPV RRI+ +MSEMGL A Sbjct: 32 LNEDGKDGLTLAVYAERAYLDYAISVVKGRALPDVADGQKPVQRRILFSMSEMGLRADAK 91 Query: 72 FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131 KSAR+VG+V+GK HPHGDQS YD+LVRLAQ F RYPLI GQGNFG+ DGD AAA RY Sbjct: 92 PVKSARVVGDVLGKFHPHGDQSAYDALVRLAQSFSLRYPLIDGQGNFGSRDGDGAAAMRY 151 Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191 TEAR+T++A L+L +DE VDF Y+ EP + P++ P +L NG SGIAVGMAT I Sbjct: 152 TEARLTKIAGLLLSEIDEGTVDFAPNYDGSFQEPKLLPARLPFVLLNGASGIAVGMATEI 211 Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251 PSHN++E+ AA+AL+ +P++S +LL + GPD+P GG I+ S I + Y GRG + Sbjct: 212 PSHNLREVASAAIALMKSPKMSTAELLGIMPGPDYPGGGQIISSPAEIAQIYETGRGSIK 271 Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELI-----IAKR------------ 294 VRARW VEE+ RG W IVV E+P R++++I E+ + K+ Sbjct: 272 VRARWSVEELARGQWQIVVNELPPSASSQRVLQEIEEITNPKVKVGKKTLTPEQNNLKST 331 Query: 295 -IPLLEDIRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRV 351 + +L+ +RDES++D VR+V PK++++D + + + + +E+ P+N+ ++ Sbjct: 332 ILNVLDGVRDESSKDAAVRLVFEPKSKNIDVNEFVNLLLAHTSLESNAPMNLVMIGNDGR 391 Query: 352 PQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED 411 P+ L IL EW+ R + RR+ +R+ + R+ IL+G LI LNID++I IIRN D Sbjct: 392 PRQKGLKEILSEWVEFRVSTVTRRTQYRLGKVKDRMHILEGRLIVLLNIDKVIKIIRNSD 451 Query: 412 KPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQ 471 +PK ++ F L++ Q + IL++RLR L +LE +I+ EL L E++ ++ LL S Sbjct: 452 EPKSDLIKEFKLSDRQAEDILDIRLRQLARLEGIKIEQELKQLQTERDDLEGLLQS---- 507 Query: 472 WNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR 531 R +KEI S D G R T + DK + + + EP+TV++S +GW+R Sbjct: 508 --DAVLRKRIIKEIESDLKDFGDDRRTLIQ---EDKRAVAETKVIDEPVTVIVSQKGWVR 562 Query: 532 SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ 591 + H D + FK GD+L T D I +DG+ YT+ L RG G + Sbjct: 563 VRQGHEHDATQFSFKAGDALYGTFEVRTIDVIQGFGSDGRVYTVQVSELPGARGDGSPLT 622 Query: 592 LLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK 651 ++L +V + +L+ + G F+ S++ + GK+F+ V S+ Sbjct: 623 SFVNLATGSQMVAYYAGQPDDLVLLSTKAGYGFLANVSDMSTRNKAGKSFISVDSKVPGD 682 Query: 652 LV-----VKVTGDHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDGGISDVICFKI 705 VKV VA + E KLL+FS+D++ + + GKGV L D Sbjct: 683 APLGAAKVKVGMKQVACLSEASKLLVFSLDELKRLPTGGKGVILMGLDDKEFLASAIAVG 742 Query: 706 CEGLTWIDSAGRSYNRSE 723 +G T+ AGR+ +E Sbjct: 743 SDGATY-SGAGRAGKPTE 759 >gi|92114661|ref|YP_574589.1| DNA topoisomerase IV subunit A [Chromohalobacter salexigens DSM 3043] gi|91797751|gb|ABE59890.1| DNA topoisomerase IV subunit A [Chromohalobacter salexigens DSM 3043] Length = 750 Score = 507 bits (1306), Expect = e-141, Method: Compositional matrix adjust. Identities = 283/744 (38%), Positives = 438/744 (58%), Gaps = 25/744 (3%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 E +V+ +SL+ E+ YL Y++ I +RA+P + DG KPV RRI++AM E+ L A +K Sbjct: 9 EGDVERLSLKEYTEKAYLDYSMYVILDRALPHIGDGMKPVQRRIVYAMRELSLTASAKYK 68 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYT 132 KSAR VG+V+GK HPHGD + Y+++V +AQ F RYPLI GQGN+G+ D S AA RYT Sbjct: 69 KSARTVGDVLGKFHPHGDSACYEAMVLMAQSFSYRYPLIDGQGNWGSPDDPKSFAAMRYT 128 Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192 EAR+++ +E++L + + VD+ ++ EP V P++ P++L NG +GIAVGMAT IP Sbjct: 129 EARLSKFSEVLLSELGQGTVDWTPNFDGTLDEPAVLPARLPHVLLNGATGIAVGMATDIP 188 Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252 HNV+E+ +A L+ +P+ ++ L+ Y+ PDFPT I+ + + Y GRG ++ Sbjct: 189 PHNVREVVDATCHLLRHPQATVSDLMAYVPAPDFPTEAEIISPSSDLAKLYESGRGSVKL 248 Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV--R 310 R R+ +EE +VVT +PYQV ++++E+IA + AK++P++ D+RDES + R Sbjct: 249 RGRYTLEE-----GNVVVTALPYQVSGAKVLEQIAAQMQAKKLPMVADLRDESTHETPTR 303 Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370 +V+ P++ +D + LM +F +D+E +N+NV+ + P+VM L+ IL EWL RR Sbjct: 304 LVIVPRSNRVDVEALMAHLFATTDLEKNVRVNLNVIGLDGRPRVMALNAILDEWLRFRRA 363 Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDA 430 + RR R+ ++ R+ IL+GLL AYLNIDE+I IIR ED PK ++ F L+E Q +A Sbjct: 364 TVRRRLEHRLGKVEDRLHILEGLLTAYLNIDEVIRIIREEDVPKTALIEAFGLSERQAEA 423 Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490 IL LRLR L KLEE++I+ E D LLAE+E++ LL + + I E+R+ + + + Sbjct: 424 ILELRLRHLAKLEEFKIRGEQDELLAERERLKELLGNDAALTDLIERELRQDADGYGDA- 482 Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDS 550 RR E A KA + +I +PITVV+S +GWIRS K H +D + L +K GD Sbjct: 483 ----RRAPLVERGEA-KALSEVELIGADPITVVLSEKGWIRSAKGHEIDPAGLSYKAGDR 537 Query: 551 LKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDS 610 +A + ++LL G++YTL A NL S R GE I I+ +V + Sbjct: 538 FHLAARGKSNQPLVLLDDAGRSYTLTAHNLPSARSQGEPITGRINPGAGARMVGVMLDVP 597 Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT---GDHVAVVGEN 667 + L+ S G FI ++I ++ GK L V + V V +AVV Sbjct: 598 EARYLLASDGGYGFIARLDDLIGKSKAGKAALSVPKGCNVLPPVAVPEGEDTRIAVVSNE 657 Query: 668 RKLLIFSIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTWIDSAGRSYN 720 +LL+F ++Q+P M++GKG ++ + ++ + D+ L + + R Sbjct: 658 GRLLVFPLEQLPVMAKGKGNKMIDIPGARAANREEFVRDLAMLPAGASLV-VHAGKRKQT 716 Query: 721 RSENDLLGWLGKRGGVGSLVPKGF 744 S DL ++G+RG GS + +GF Sbjct: 717 LSSRDLDYYVGERGRRGSKLSRGF 740 >gi|229844203|ref|ZP_04464344.1| DNA topoisomerase IV subunit A [Haemophilus influenzae 6P18H1] gi|229847153|ref|ZP_04467258.1| DNA topoisomerase IV subunit A [Haemophilus influenzae 7P49H1] gi|229809982|gb|EEP45703.1| DNA topoisomerase IV subunit A [Haemophilus influenzae 7P49H1] gi|229813197|gb|EEP48885.1| DNA topoisomerase IV subunit A [Haemophilus influenzae 6P18H1] Length = 747 Score = 507 bits (1305), Expect = e-141, Method: Compositional matrix adjust. Identities = 277/743 (37%), Positives = 437/743 (58%), Gaps = 26/743 (3%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 E ++ + LR E+ YL Y++ I +RA+P + DG KPV RRI++AMSE+GL+ A +KK Sbjct: 7 EGIEQMPLRTFTEKAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKYKK 66 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTE 133 SAR VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S AA RYTE Sbjct: 67 SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 126 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 +R+++++E++L + + VD++ ++ +EP P++ P++L NGT+GIAVGMAT IP Sbjct: 127 SRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATDIPP 186 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ EI +AA+ L+DNP+ ++ +LE + GPDFPT I+ + I + Y GRG ++R Sbjct: 187 HNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRGSIKMR 246 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRI 311 A W E+ I+++ +P+Q S++I +IA+ + AK++P+LEDIRDE+ + +RI Sbjct: 247 ATWKKED-----GEIIISALPHQSSPSKVIAQIADQMTAKKLPMLEDIRDEADHENPIRI 301 Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371 VL P++ +D D LM +F +D+E + +NMN++ + P V L IL EWL RR Sbjct: 302 VLVPRSNRVDTDALMAHLFATTDLEKSYRVNMNMIGLDHKPAVKGLLEILNEWLDFRRTT 361 Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431 + RR +R+ + R+ IL+GL+IA+LNIDE+I IIR+ED PK ++ RF+L++ Q DAI Sbjct: 362 VTRRLQYRLDKVLSRLHILEGLMIAFLNIDEVIEIIRHEDDPKAELMVRFNLSDEQADAI 421 Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491 LNLRLR L KLEE Q+K+E D L E+ ++++L S ++ I EI+E + ++ Sbjct: 422 LNLRLRHLAKLEENQLKAEQDELEKERLNLEAILGSERRLNTLIKKEIQEDAKKYASP-- 479 Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551 R + E A K + M EP+TV++S GW+R K H +D +L +K GDS Sbjct: 480 ---RMSQLVEREEA-KMISESDMTPAEPVTVILSEMGWVRCAKGHDIDPKSLSYKAGDSY 535 Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611 + ++ + + G++Y L +L S R GE + ++L I + Sbjct: 536 LAHACGKSNQAVVFIDSTGRSYALDPISLPSARSQGEPLTGKLNLPTGATIEYVVMASEQ 595 Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVAVVGENR 668 +LL+ S G FI + ++IA + GK + + K+ K ++ T VA+ R Sbjct: 596 QELLMASDAGYGFICKFEDLIARNKTGKALISLPENAKVLKPKTLINSTALVVAITSAGR 655 Query: 669 KLLIFSIDQIPEMSRGKGVRLQSYKDGGISD-------VICFKICEGLTWIDSAGRSYNR 721 +LIF +P +S+GKG ++ + D ++ L + S R Sbjct: 656 -MLIFPAQDLPVLSKGKGNKMITIPAANAKDRSELLTKLLLISDQASLEFY-SGKRKIVL 713 Query: 722 SENDLLGWLGKRGGVGSLVPKGF 744 DL + +RG GS +P+G Sbjct: 714 KPEDLQKFRTERGRKGSTLPRGL 736 >gi|119713194|gb|ABL97262.1| DNA topoisomerase IV subunit A [uncultured marine bacterium EB0_50A10] Length = 753 Score = 507 bits (1305), Expect = e-141, Method: Compositional matrix adjust. Identities = 268/743 (36%), Positives = 452/743 (60%), Gaps = 24/743 (3%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 ++ ++SL+ EE YL YA+ I +RA+P++ DG KPV RRI++AMSE+GLD G+ +K Sbjct: 4 QDQTNSISLKQYAEESYLNYAMYVILDRALPNIGDGLKPVQRRILYAMSELGLDAGSKYK 63 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYT 132 KSAR VG+VIGK HPHGD + Y+++V +AQ F +YPL+ GQGN+G+ D S AA RYT Sbjct: 64 KSARTVGDVIGKFHPHGDSAAYEAMVLMAQNFSFKYPLVDGQGNWGSQDDPKSFAAMRYT 123 Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192 E+++T+ A+L++ + VD++ ++ EPV+FP+K P++L NGTSGIAVGMAT IP Sbjct: 124 ESKLTKFADLLISELKSGTVDWQPNFDGSLLEPVIFPAKIPSILLNGTSGIAVGMATDIP 183 Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252 SHN+ E+ +A + ++NP+ ++ L + I GPDF I+ S E ++E Y GRGGF+ Sbjct: 184 SHNINEVIDATIHTLENPKAELKDLTKIIKGPDFSNEAPIIASFEELLEIYSTGRGGFKA 243 Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES--AEDVR 310 +A W E+ I++ +PYQ S+++E+IA+ ++ K+IP++ D+ DE E VR Sbjct: 244 QAHWTQEKNE-----IIINALPYQASGSKILEQIADQMLKKKIPMVIDLADEGDHKEPVR 298 Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370 +V+ K+ ++ +M +F +D++ + NMN++S+ P+V L ++KEWL R+ Sbjct: 299 LVITLKSNRVNAQDVMNHLFASTDLQKNYRANMNLISLKGGPKVFTLVELIKEWLVFRKN 358 Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDA 430 + R+ R+ ++ R+ IL+GLLI YL++D++I IIR D+PK ++ F L++ Q +A Sbjct: 359 TVTRKLEHRLDQVNDRLHILEGLLIVYLDLDKVIKIIRESDEPKKEIIKAFKLSDIQANA 418 Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490 IL +RLR L KLE+ +++ E D LL E+ KI+ +L S + I E+ E+K+ F + Sbjct: 419 ILEIRLRQLAKLEQIKLEQERDTLLEEQNKIEKILGSKTRLKTLIKNELLEIKDEFGED- 477 Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDS 550 R++ E S A + ++ ++ E ITVV+S GWIRS K H +D S+L ++ D Sbjct: 478 ----RKSPIKESSEAKVFSEEETLV-TESITVVLSEAGWIRSAKGHEIDPSSLSYRGEDK 532 Query: 551 LKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDS 610 L+ + + L ++GKAY+LP+ +L S RG G+ I + + ++ + + Sbjct: 533 LQDFCRGKSNQLSVFLDSNGKAYSLPSYSLPSARGMGDPISGRVSADSGVKFISTLIGND 592 Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHV--AVVGENR 668 K +++++ G +I E +++N + GK F+K+ +E ++ ++V DHV A V Sbjct: 593 DDKYMIMNTAGYGYISEFKNMVSNKKSGKAFMKLPNEAQLLKALRVREDHVYIAAVSNIG 652 Query: 669 KLLIFSIDQIPEMSRGKGVRLQSY-------KDGGISDVICFKICEGLTWIDSAGRSYNR 721 +LLIF I+++P + +GKG ++ + K+ ++ L ++S R Sbjct: 653 RLLIFEINELPVLPKGKGNKIINIPTSKFVAKEEYMAHAQLISPSSSLR-VESGKRFLTL 711 Query: 722 SENDLLGWLGKRGGVGSLVPKGF 744 DL ++ R G+++P+G+ Sbjct: 712 KLKDLENYISSRAKRGNMLPQGY 734 >gi|240949646|ref|ZP_04753981.1| DNA topoisomerase IV subunit A [Actinobacillus minor NM305] gi|240295904|gb|EER46580.1| DNA topoisomerase IV subunit A [Actinobacillus minor NM305] Length = 747 Score = 507 bits (1305), Expect = e-141, Method: Compositional matrix adjust. Identities = 273/749 (36%), Positives = 453/749 (60%), Gaps = 26/749 (3%) Query: 9 SNTLVE-ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67 SN ++ E V+ + ++ E+ YL Y++ I +RA+P + DG KPV RRII+AMSE+GL+ Sbjct: 2 SNEIINYEGVEQMPIKRFTEDAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAMSELGLN 61 Query: 68 FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAA 127 A + K+AR VG+V+GK HPHGD + Y ++V +AQ F RYPLI GQGN+G+++ D AA Sbjct: 62 ATAKYAKAARTVGDVLGKFHPHGDSACYGAMVGMAQDFTFRYPLIDGQGNWGSLE-DDAA 120 Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187 AYRYTEAR+T++A ++L +D+ VDF+ ++ EPV FPS+ P++L NG++GIAVGM Sbjct: 121 AYRYTEARLTKIAAILLSELDQGTVDFKPNFDGSKVEPVTFPSRLPHILLNGSTGIAVGM 180 Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247 AT IP HN+ EI EA++ L++NP+ ++ LL + GPD+PT I+ + I + Y GR Sbjct: 181 ATDIPPHNINEIAEASVMLLENPKATLSDLLTVVQGPDYPTEAEIITPKSDIAKIYEQGR 240 Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307 G R+RA W E+ IV+ +P+Q S++I +IA+ + K++P+++DIRDES Sbjct: 241 GSIRMRAVWSKED-----GEIVIQALPHQASPSKIIAQIADQMRNKKLPMVDDIRDESDH 295 Query: 308 D--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365 + +RIV+ P++ +D D LM+ +F +D+E + +NMN++ + P V L IL EWL Sbjct: 296 ENPIRIVIVPRSNRIDFDALMDHLFATTDLEKSYRVNMNMIGLDGKPAVKNLHDILTEWL 355 Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425 + RR + RR + ++ I R+ IL GL+IA+LNIDE+I+IIRNED+PK V+++RF+L++ Sbjct: 356 SFRRSTVTRRLNDKLDKILNRLHILDGLMIAFLNIDEVISIIRNEDEPKAVLMARFNLSD 415 Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485 Q +AILNLRLR L KLEE+++++E + L +E++++ +L S ++ I EI+ + Sbjct: 416 IQAEAILNLRLRHLAKLEEHELQAEKNQLESERDELRLILGSERRLNTLIKKEIQADAKT 475 Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545 F+ RR+ E + A KA + + E +TV++S +GW+R K H +D+ L + Sbjct: 476 FADP-----RRSPLVERAEA-KAISESDLTPTEDVTVILSEKGWVRCAKGHDIDVEGLSY 529 Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605 + GD + ++ L + G+AY L +L S R GE + I L + Sbjct: 530 RAGDGYLAHARGRSNQPVVFLDSTGRAYALDPTSLPSARSQGEPLTGKITLPEGAIVEQV 589 Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVA 662 + K+L+ S G FI ++++ + GK + ++ K+ +L+ + Sbjct: 590 LMAAPETKVLMASDSGYGFICTFDDLVSRNKAGKAVISLTENAKVLAPQLIDNEEDVSLV 649 Query: 663 VVGENRKLLIFSIDQIPEMSRGKGVRL-----QSYK--DGGISDVICFKICEGLTWIDSA 715 + ++L+F I ++P +S+GKG ++ Q+ K ++ ++ K + L ++ S Sbjct: 650 AMSSAGRMLVFPIAELPILSKGKGNKIINISAQAAKERRELLARLLLIKANQSLVFV-SG 708 Query: 716 GRSYNRSENDLLGWLGKRGGVGSLVPKGF 744 R +D+ + G+R GS + +G Sbjct: 709 KRKITLKPSDIDNYRGERARKGSQLVRGL 737 >gi|322514216|ref|ZP_08067278.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Actinobacillus ureae ATCC 25976] gi|322119909|gb|EFX91918.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Actinobacillus ureae ATCC 25976] Length = 748 Score = 507 bits (1305), Expect = e-141, Method: Compositional matrix adjust. Identities = 268/743 (36%), Positives = 448/743 (60%), Gaps = 25/743 (3%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 E V+ + ++ E+ YL Y++ I +RA+P + DG KPV RRII+AMSE+GL+ A +KK Sbjct: 8 EGVEQMPIKRFTEDAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAMSELGLNASAKYKK 67 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTE 133 SAR VG+V+GK HPHGD + Y+++V +AQPF RYPLI GQGN+G D S AA RYTE Sbjct: 68 SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLIDGQGNWGAPDDPKSFAAMRYTE 127 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 ++++++AE++L + + VD++ ++ EP P++ P++L NGT GIAVGMAT IP Sbjct: 128 SKLSKMAEVLLGELGQGTVDYQPNFDGSLEEPKYLPARLPHILLNGTMGIAVGMATDIPP 187 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E+ EA++ L++NP S+ +L+ + GPD+PT I+ + I + Y G+G ++R Sbjct: 188 HNINELVEASVMLLENPRASLAELMTVVQGPDYPTEAEIITPKADIAKMYEQGKGSIKMR 247 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRI 311 A W E+ IV++ +P+Q S++IE+IA + K++P+++DIRDES + +RI Sbjct: 248 AVWKKED-----GEIVISALPHQASPSKIIEQIATQMRNKKLPMVDDIRDESDHENSIRI 302 Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371 V+ P++ +D + LM+ +F +D+E + +NMN++ + P V L IL EWLA RR Sbjct: 303 VIVPRSNRIDFEALMDHLFATTDLEKSYRVNMNMIGLDGKPAVKNLHTILTEWLAFRRTT 362 Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431 + RR ++R+ I R+ IL GL+IA+LNIDE+I IIRNED+PK +++RF+L+E Q +AI Sbjct: 363 VRRRLNYRLDKILNRLHILDGLIIAFLNIDEVIEIIRNEDEPKTALMARFNLSEAQAEAI 422 Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491 LNLRLR L KLEE+++++E L E++++ L S ++ I EI+ ++F+ Sbjct: 423 LNLRLRHLAKLEEHELQAEKSQLEKERDELQLTLGSERRLNTLIKKEIQADAKVFASP-- 480 Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551 RR+ E + A KA + + E +TV++S +GW+R K H +D+ L ++ GD Sbjct: 481 ---RRSPLVERAEA-KAISESDLTPTEDVTVILSEKGWVRCAKGHDIDVQGLSYRAGDGY 536 Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611 H + ++ L + G+AY L +L S R GE + I L + + +S Sbjct: 537 LAHAHGRSNQPVVFLDSTGRAYALDPTSLPSARSQGEPLTGKITLPDGATVQQVLMANSD 596 Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVAVVGENR 668 K+L+ S G FI ++++ + GK + ++ K+ +L+ + + Sbjct: 597 TKVLMASDSGYGFICSFEDLVSRNKAGKAVISLTENAKVLPPQLIDNEAELSLVAMSSVG 656 Query: 669 KLLIFSIDQIPEMSRGKGVRL-----QSYKDGG--ISDVICFKICEGLTWIDSAGRSYNR 721 ++L+F I ++P++S+GKG ++ + K+G ++ ++ K + L ++ S R Sbjct: 657 RMLVFPITELPQLSKGKGNKIINISAPAAKEGNELLARLLLVKPTQSLVFV-SGKRKITL 715 Query: 722 SENDLLGWLGKRGGVGSLVPKGF 744 +D+ + G+R GS + +G Sbjct: 716 KPSDIDNYRGERARKGSQLVRGL 738 >gi|56461053|ref|YP_156334.1| DNA topoisomerase IV subunit A [Idiomarina loihiensis L2TR] gi|56180063|gb|AAV82785.1| DNA topoisomerase IV subunit A [Idiomarina loihiensis L2TR] Length = 747 Score = 507 bits (1305), Expect = e-141, Method: Compositional matrix adjust. Identities = 276/738 (37%), Positives = 441/738 (59%), Gaps = 28/738 (3%) Query: 23 RFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEV 82 RF EE YL Y++ I +RA+P++ DG KPV RRI++AMSE+GL A +KKSAR VG+V Sbjct: 13 RFT-EEAYLNYSMYVIMDRALPNIGDGLKPVQRRIVYAMSELGLSALAKYKKSARTVGDV 71 Query: 83 IGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQVAE 141 +GK HPHGD + Y+++V +AQPF R+PL+ GQGN+G+ D S AA RYTEAR+++ +E Sbjct: 72 LGKFHPHGDSACYEAMVLMAQPFTYRHPLVDGQGNWGSPDDPKSFAAMRYTEARLSKFSE 131 Query: 142 LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICE 201 ++L + + VD+ ++ EP V P++ P++L NG +GIAVGMAT IP HN +E+ Sbjct: 132 VLLSELGQGTVDWIPNFDGTMKEPQVLPARLPHILLNGVTGIAVGMATDIPPHNAREVAN 191 Query: 202 AALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEV 261 A L++ P +E ++E + GPD+PT I+ E IV+ Y GRG ++RA + VE+ Sbjct: 192 ACAMLLEKPGSQLEDIMEVLKGPDYPTDAEIITPSEDIVKLYETGRGSIKMRACYSVED- 250 Query: 262 GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFPKNRS 319 IV+T +P+Q +R++E+IA + AK++PL+ D+RDES + R+V+ P++ Sbjct: 251 ----GEIVITALPHQASGARVLEQIAHQMQAKKLPLVSDLRDESDHENPTRLVVVPRSNR 306 Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379 +D + LM +F +D+E ++ +N+N+L + P+V PL GILKEWL R+ + RR R Sbjct: 307 VDTEQLMNHLFATTDLEKQYRVNLNILGLDGRPKVKPLVGILKEWLEFRQTTVTRRLQHR 366 Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSL 439 + + R+ IL+GLLIAYLNIDE+I IIR EDKPK ++SRF+LT+ Q +AIL L+LR L Sbjct: 367 LDKVLARLHILEGLLIAYLNIDEVIEIIRTEDKPKEELMSRFALTDKQAEAILELKLRHL 426 Query: 440 RKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG-RRRTT 498 KLEE ++ E D L E+EK+++LL S ++ I KE+ + + + G RR+ Sbjct: 427 AKLEEMKLTGEQDELNKEREKLETLLGSDRRLKTLIK------KELLADAENYGDERRSP 480 Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAH 558 E S A KA ++ + E +TVV+S +GW+R+ K H ++ L +K GDS + Sbjct: 481 IVERSEA-KALSERDLTPAEAVTVVLSKKGWVRTAKGHDIEGDKLSYKSGDSYLASAEGK 539 Query: 559 TTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVS 618 + ++ L + GK+++ A L S R GE + L +++ + LL+ S Sbjct: 540 SNQPVVFLDSSGKSFSCEAHLLPSARSQGEPLTGRFSLVAGENVEHVLMAKDESHLLLAS 599 Query: 619 SKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVAVVGENRKLLIFSI 675 G F+ + S++++ + GK + + + K+ V + D V V+ ++L+F + Sbjct: 600 DAGYGFVCQFSDLVSRNKNGKAIITLPTGAKILPPNNVNDLQHDKVIVISNEGRMLVFPV 659 Query: 676 DQIPEMSRGKGVRLQSY-------KDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLG 728 +P++S+GKG +L S ++ + + +T I + R DL Sbjct: 660 ADLPQLSKGKGNKLISIPALRAQSREEYVVALATAAPDAAITLI-AGKRKLTLKPADLEH 718 Query: 729 WLGKRGGVGSLVPKGFPR 746 + G+RG G+ +P+G R Sbjct: 719 YYGERGRRGNKLPRGLQR 736 >gi|309973202|gb|ADO96403.1| DNA topoisomerase IV, subunit A [Haemophilus influenzae R2846] Length = 747 Score = 507 bits (1305), Expect = e-141, Method: Compositional matrix adjust. Identities = 277/743 (37%), Positives = 437/743 (58%), Gaps = 26/743 (3%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 E ++ + LR E+ YL Y++ I +RA+P + DG KPV RRI++AMSE+GL+ A +KK Sbjct: 7 EGIEQMPLRTFTEKAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKYKK 66 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTE 133 SAR VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S AA RYTE Sbjct: 67 SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 126 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 +R+++++E++L + + VD++ ++ +EP P++ P++L NGT+GIAVGMAT IP Sbjct: 127 SRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATDIPP 186 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ EI +AA+ L+DNP+ ++ +LE + GPDFPT I+ + I + Y GRG ++R Sbjct: 187 HNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRGSIKMR 246 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRI 311 A W E+ I+++ +P+Q S++I +IA+ + AK++P+LEDIRDE+ + +RI Sbjct: 247 ATWKKED-----GEIIISALPHQSSPSKVIAQIADQMTAKKLPMLEDIRDEADHENPIRI 301 Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371 VL P++ +D D LM +F +D+E + +NMN++ + P V L IL EWL RR Sbjct: 302 VLVPRSNRVDTDALMAHLFATTDLEKSYRVNMNMIGLDHKPAVKGLLEILNEWLDFRRTT 361 Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431 + RR +R+ + R+ IL+GL+IA+LNIDE+I IIR+ED PK ++ RF+L++ Q DAI Sbjct: 362 VTRRLQYRLDKVLSRLHILEGLMIAFLNIDEVIEIIRHEDDPKAELMVRFNLSDEQADAI 421 Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491 LNLRLR L KLEE Q+K+E D L E+ ++++L S ++ I EI+E + ++ Sbjct: 422 LNLRLRHLAKLEENQLKAEQDELEKERLNLEAILGSERRLNTLIKKEIQEDAKKYASP-- 479 Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551 R + E A K + M EP+TV++S GW+R K H +D +L +K GDS Sbjct: 480 ---RMSQLVEREEA-KMISESDMTPAEPVTVILSEMGWVRCAKGHDIDPKSLSYKAGDSY 535 Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611 + ++ + + G++Y L +L S R GE + ++L I + Sbjct: 536 LAHACGKSNQAVVFIDSTGRSYALDPISLPSARSQGEPLTGKLNLPTGATIEYVVMASEQ 595 Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVAVVGENR 668 +LL+ S G FI + ++IA + GK + + K+ K ++ T VA+ R Sbjct: 596 QELLMASDAGYGFICKFEDLIARNKTGKALISLPENAKVLKPKTLINSTALVVAITSAGR 655 Query: 669 KLLIFSIDQIPEMSRGKGVRLQSYKDGGISD-------VICFKICEGLTWIDSAGRSYNR 721 +LIF +P +S+GKG ++ + D ++ L + S R Sbjct: 656 -MLIFPAQDLPVLSKGKGNKMITIPAANAKDRSELLTKLLLISDQASLEFY-SGKRKIVL 713 Query: 722 SENDLLGWLGKRGGVGSLVPKGF 744 DL + +RG GS +P+G Sbjct: 714 KPEDLQKFRTERGRKGSTLPRGL 736 >gi|307252132|ref|ZP_07534031.1| DNA topoisomerase 4 subunit A [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306860432|gb|EFM92446.1| DNA topoisomerase 4 subunit A [Actinobacillus pleuropneumoniae serovar 6 str. Femo] Length = 751 Score = 507 bits (1305), Expect = e-141, Method: Compositional matrix adjust. Identities = 268/743 (36%), Positives = 448/743 (60%), Gaps = 25/743 (3%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 E V+ + ++ E+ YL Y++ I +RA+P + DG KPV RRII+AMSE+GL+ A +KK Sbjct: 11 EGVEQMPIKRFTEDAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAMSELGLNASAKYKK 70 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTE 133 SAR VG+V+GK HPHGD + Y+++V +AQPF RYPLI GQGN+G D S AA RYTE Sbjct: 71 SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLIDGQGNWGAPDDPKSFAAMRYTE 130 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 ++++++AE++L + + VD++ ++ EP P++ P++L NGT GIAVGMAT IP Sbjct: 131 SKLSKMAEVLLGELGQGTVDYQPNFDGSLEEPKYLPARLPHILLNGTMGIAVGMATDIPP 190 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E+ EA++ L++NP+ S+ +L+ + GPD+PT I+ + I + Y G+G ++R Sbjct: 191 HNINELAEASVMLLENPKASLAELMTVVQGPDYPTEAEIITPKADIAKMYEQGKGSIKMR 250 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRI 311 A W E+ IV++ +P+Q S++IE+IA + K++P+++DIRDES + +RI Sbjct: 251 AVWKKED-----GEIVISALPHQASPSKVIEQIATQMRNKKLPMVDDIRDESDHENPIRI 305 Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371 VL P++ +D + LM+ +F +D+E + +NMN++ + P V L IL EWL RR Sbjct: 306 VLVPRSNRIDFEALMDHLFATTDLEKSYRVNMNMIGLDGKPAVKNLHTILTEWLVFRRTT 365 Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431 + RR ++R+ I R+ IL GL+IA+LNIDE+I IIRNED+PK +++RF+L+E Q +AI Sbjct: 366 VTRRLNYRLDKILNRLHILDGLMIAFLNIDEVIEIIRNEDEPKTALMARFNLSEAQAEAI 425 Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491 LNLRLR L KLEE+++++E L E++++ L S ++ I EI+ + F+ Sbjct: 426 LNLRLRHLAKLEEHELQAEKSQLEKERDELQLTLGSERRLNTLIKKEIQADAKAFASP-- 483 Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551 RR+ E + A KA + + E +TV++S +GW+R K H +D+ L ++ GD Sbjct: 484 ---RRSPLVERAEA-KAISESDLTPTEDVTVILSEKGWVRCAKGHDIDVQGLSYRAGDGY 539 Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611 + + ++ L + G+AY L +L S R GE + I L + + +S Sbjct: 540 LAHAYGRSNQPVVFLDSTGRAYALDPTSLPSARSQGEPLTGKITLPDGATVQQVLMANSD 599 Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVAVVGENR 668 K+L+ S G FI ++++ + GK + ++ K+ +L+ + + Sbjct: 600 TKVLMASDSGYGFICSFEDLVSRNKAGKAVISLTENAKVLPPQLIDNEAELSLVAMSSVG 659 Query: 669 KLLIFSIDQIPEMSRGKGVRL-----QSYKDGG--ISDVICFKICEGLTWIDSAGRSYNR 721 ++L+F I ++P++S+GKG ++ Q+ K+G ++ ++ K + L ++ S R Sbjct: 660 RMLVFPITELPQLSKGKGNKIINISAQAAKEGNELLARLLLVKPTQSLVFV-SGKRKITL 718 Query: 722 SENDLLGWLGKRGGVGSLVPKGF 744 +D+ + G+R GS + +G Sbjct: 719 KPSDIDNYRGERARKGSQLVRGL 741 >gi|71042522|pdb|1ZVU|A Chain A, Structure Of The Full-Length E. Coli Parc Subunit Length = 716 Score = 506 bits (1304), Expect = e-141, Method: Compositional matrix adjust. Identities = 265/719 (36%), Positives = 436/719 (60%), Gaps = 25/719 (3%) Query: 40 ERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLV 99 +RA+P + DG KPV RRI++AMSE+GL+ A FKKSAR VG+V+GK HPHGD + Y+++V Sbjct: 2 DRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKYHPHGDSACYEAMV 61 Query: 100 RLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTY 158 +AQPF RYPL+ GQGN+G D S AA RYTE+R+++ +EL+L + + D+ + Sbjct: 62 LMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKYSELLLSELGQGTADWVPNF 121 Query: 159 NEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLL 218 + EP + P++ PN+L NGT+GIAVGMAT IP HN++E+ +AA+ALID P+ ++++LL Sbjct: 122 DGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAQAAIALIDQPKTTLDQLL 181 Query: 219 EYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQ 278 + + GPD+PT I+ SR I + Y GRG R+RA W E+ +V++ +P+QV Sbjct: 182 DIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKKED-----GAVVISALPHQVS 236 Query: 279 KSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDME 336 +R++E+IA + K++P+++D+RDES + R+V+ P++ +D D +M +F +D+E Sbjct: 237 GARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRVDMDQVMNHLFATTDLE 296 Query: 337 TRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIA 396 + +N+N++ + P V L IL EWL RR+ + RR ++R++ + +R+ IL+GLL+A Sbjct: 297 KSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRRLNYRLEKVLKRLHILEGLLVA 356 Query: 397 YLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLA 456 +LNIDE+I IIRNED+PKP ++SRF LTE Q +AIL L+LR L KLEE +I+ E L Sbjct: 357 FLNIDEVIEIIRNEDEPKPALMSRFGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEK 416 Query: 457 EKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE 516 E++++ +L S ++ N + E++ + + RR+ E A KA + M+ Sbjct: 417 ERDQLQGILASERKMNNLLKKELQADAQAYGDD-----RRSPLQEREEA-KAMSEHDMLP 470 Query: 517 KEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLP 576 EP+T+V+S GW+RS K H +D L++K GDS K A+ + ++ + + G++Y + Sbjct: 471 SEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAID 530 Query: 577 AGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR 636 L S RG GE + + L + + KLL+ S G F+ ++++A R Sbjct: 531 PITLPSARGQGEPLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNR 590 Query: 637 KGKTFLKVSSEEKM--KLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRL----- 689 GK + + + +V++ D + + + ++L+F + +P++S+GKG ++ Sbjct: 591 AGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSKGKGNKIINIPS 650 Query: 690 --QSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746 + + G++ + LT I R +L G+RG G+L+ +G R Sbjct: 651 AEAARGEDGLAQLYVLPPQSTLT-IHVGKRKIKLRPEELQKVTGERGRRGTLM-RGLQR 707 >gi|269993789|dbj|BAI50571.1| DNA topoisomerase IV subunit A [Pseudoalteromonas atlantica] Length = 764 Score = 506 bits (1304), Expect = e-141, Method: Compositional matrix adjust. Identities = 271/753 (35%), Positives = 446/753 (59%), Gaps = 23/753 (3%) Query: 6 ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65 +S+++TL+ + ++ ++ E+ YL Y++ I +RA+P + DG KPV RRII+AMSE+G Sbjct: 1 MSDTDTLLMQGIEQQTMGRFTEDAYLNYSMYVIMDRALPHVGDGLKPVQRRIIYAMSELG 60 Query: 66 LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124 L A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D Sbjct: 61 LSAAAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAADDPK 120 Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184 S AA RYTEAR+++ +E++L+ + + VD+ ++ EP+V P++ P++L NG +GIA Sbjct: 121 SFAAMRYTEARLSKFSEVLLKELGQGTVDWTPNFDGTMDEPLVLPARLPHILLNGVTGIA 180 Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244 VGMAT IP HNV+E+ A L+D P+ +++LLE + PD+PT I+ + I + Y+ Sbjct: 181 VGMATDIPPHNVREVASACCLLLDKPKTELDELLELVHAPDYPTDAEIITPKADIHKIYK 240 Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304 GRG ++RA + EE G IV+T +P+Q ++++E+IA + AK++P++ D+RDE Sbjct: 241 TGRGSIKMRAVYT-EEHGD----IVITALPHQCSGAKVLEQIAAQMNAKKLPMVADLRDE 295 Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362 S + RIV+ P++ + + LM +F +D+E + +N+N+L + PQV L IL Sbjct: 296 SDHENPTRIVIVPRSNRIKAEPLMAHLFATTDLEKNYRVNLNMLGLDGRPQVKDLRSILS 355 Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422 EWL RRE + RR R+ + R+ IL+GLL A+LNIDE+I IIR EDKPKPV++ RF Sbjct: 356 EWLTFRRETVRRRLQHRLDKVLARLHILEGLLAAFLNIDEVIEIIRTEDKPKPVLMERFD 415 Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482 LT+ Q +AIL L+LR L KLEE++I+ E D L E++K++ L S ++ + EI+E Sbjct: 416 LTDTQAEAILELKLRHLAKLEEFKIRGEQDELAKERDKLEQTLGSDRRMSTLLKKEIQEA 475 Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542 +++ RR+ E A KA ++ +I E +TVV+S++GW R K H +D+ Sbjct: 476 ADMYGDD-----RRSPVIERVEA-KALSEKDLIPSESVTVVLSDKGWARVGKGHDIDVEG 529 Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602 L+++ GD K + + + L + G+A+ A +L S R GE + +L + Sbjct: 530 LNYRAGDEYKASAKGKSNQPAVFLDSAGRAFATDAHSLPSARSQGEPMTGRFNLTTGANF 589 Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---D 659 + + LL+ S G FI + ++++ + GK + V + ++V D Sbjct: 590 EHVVMGEDNQVLLMASDAGYGFITDFKDLVSKNKNGKALVSVPKGGILLSPIRVNDVATD 649 Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISD-----VICFKICEGLTWIDS 714 + + ++L+F + +P++ +GKG ++ S + + + +G + Sbjct: 650 YCMAISNEGRMLLFPLRDLPKLGKGKGNKIISIPGAKVQAREEFVKVLAVVPQGSSVTLH 709 Query: 715 AG-RSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746 AG R +DL + G+RG G+ +P+G R Sbjct: 710 AGKRKLTLKPSDLEHYHGERGRRGNKLPRGLQR 742 >gi|303252209|ref|ZP_07338377.1| DNA topoisomerase IV subunit A [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307247552|ref|ZP_07529596.1| DNA topoisomerase 4 subunit A [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|302648992|gb|EFL79180.1| DNA topoisomerase IV subunit A [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|306855917|gb|EFM88076.1| DNA topoisomerase 4 subunit A [Actinobacillus pleuropneumoniae serovar 2 str. S1536] Length = 748 Score = 506 bits (1304), Expect = e-141, Method: Compositional matrix adjust. Identities = 268/743 (36%), Positives = 448/743 (60%), Gaps = 25/743 (3%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 E V+ + ++ E+ YL Y++ I +RA+P + DG KPV RRII+AMSE+GL+ A +KK Sbjct: 8 EGVEQMPIKRFTEDAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAMSELGLNASAKYKK 67 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTE 133 SAR VG+V+GK HPHGD + Y+++V +AQPF RYPLI GQGN+G D S AA RYTE Sbjct: 68 SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLIDGQGNWGAPDDPKSFAAMRYTE 127 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 ++++++AE++L + + VD++ ++ EP P++ P++L NGT GIAVGMAT IP Sbjct: 128 SKLSKMAEVLLGELGQGTVDYQPNFDGSLEEPKYLPARLPHILLNGTMGIAVGMATDIPP 187 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E+ EA++ L++NP+ S+ +L+ + GPD+PT I+ + I + Y G+G ++R Sbjct: 188 HNINELAEASVMLLENPKASLAELMTVVQGPDYPTEAEIITPKADIAKMYEQGKGSIKMR 247 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRI 311 A W E+ IV+ +P+Q S++IE+IA + K++P+++DIRDES + +RI Sbjct: 248 AVWKKED-----GEIVILALPHQASPSKIIEQIATQMRNKKLPMVDDIRDESDHENPIRI 302 Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371 VL P++ +D + LM+ +F +D+E + +NMN++ + P V L IL EWL RR Sbjct: 303 VLVPRSNRIDFEALMDHLFATTDLEKSYRVNMNMIGLDGKPAVKNLHTILTEWLVFRRTT 362 Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431 + RR ++R+ I R+ IL+GL+IA+LNIDE+I IIRNED+PK +++RF+L+E Q +AI Sbjct: 363 VTRRLNYRLDKILNRLHILEGLMIAFLNIDEVIEIIRNEDEPKTALMARFNLSEAQTEAI 422 Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491 LNLRLR L KLEE+++++E L E++++ L S ++ I EI+ + F+ Sbjct: 423 LNLRLRHLAKLEEHELQAEKSQLEKERDELQLTLGSERRLNTLIKKEIQADAKAFASP-- 480 Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551 RR+ E + A KA + + E +TV++S +GW+R K H +D+ L ++ GD Sbjct: 481 ---RRSPLVERAEA-KAISESDLTPTEDVTVILSEKGWVRCAKGHDIDVQGLSYRAGDGY 536 Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611 + + ++ L + G+AY L +L S R GE + I L + + +S Sbjct: 537 LAHAYGRSNQPVVFLDSTGRAYALDPTSLPSARSQGEPLTGKITLPDGATVQQVLMANSD 596 Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVAVVGENR 668 K+L+ S G FI ++++ + GK + ++ K+ +L+ + + Sbjct: 597 TKVLMASDSGYGFICSFEDLVSRNKAGKAVISLTENAKVLPPQLIDNEAELSLVAMSSVG 656 Query: 669 KLLIFSIDQIPEMSRGKGVRL-----QSYKDGG--ISDVICFKICEGLTWIDSAGRSYNR 721 ++L+F I ++P++S+GKG ++ Q+ K+G ++ ++ K + L ++ S R Sbjct: 657 RMLVFPITELPQLSKGKGNKIINISAQAAKEGNELLARLLLVKPAQSLVFV-SGKRKITL 715 Query: 722 SENDLLGWLGKRGGVGSLVPKGF 744 +D+ + G+R GS + +G Sbjct: 716 KPSDIDNYRGERARKGSQLVRGL 738 >gi|167618386|ref|ZP_02387017.1| DNA topoisomerase IV subunit A [Burkholderia thailandensis Bt4] Length = 772 Score = 506 bits (1304), Expect = e-141, Method: Compositional matrix adjust. Identities = 291/729 (39%), Positives = 427/729 (58%), Gaps = 34/729 (4%) Query: 23 RFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEV 82 R+A E +YL YA+S +K RA+PD+ DG KPV RRI++AM+EMGL A KSAR+VG+V Sbjct: 24 RYA-ERQYLDYAVSVVKGRALPDVSDGQKPVQRRILYAMNEMGLGDNAKPVKSARVVGDV 82 Query: 83 IGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAEL 142 +GK HPHGDQS YD+LVRLAQ F RYPLI GQGNFG+ DGD AAA RYTEAR+T +A+L Sbjct: 83 LGKYHPHGDQSAYDALVRLAQDFSMRYPLIDGQGNFGSRDGDGAAAMRYTEARLTPIAKL 142 Query: 143 ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEA 202 +L +DE VDF Y+ EP + P++ P +L NG SGIAVG+AT IPSHN++E+ A Sbjct: 143 LLDEIDEGTVDFMPNYDGSFDEPKLLPARLPFVLLNGASGIAVGLATEIPSHNLREVAAA 202 Query: 203 ALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVG 262 A+ALI +P + +L++ + GPDFP GG I+ S I +Y GRG +VRARW +E++ Sbjct: 203 AVALIRHPALPHAELMQLVPGPDFPGGGQIISSDAEISAAYETGRGSLKVRARWKIEDLA 262 Query: 263 RGSWCIVVTEIPYQVQKSRLIEKIAELIIAK------------------RIPLLEDIRDE 304 RG W +VVTE+P +++E+I EL K + LL+ +RDE Sbjct: 263 RGQWQLVVTELPPNTSCQKVLEEIEELTNPKLKAGKKTLTQEQINTKKTMLDLLDAVRDE 322 Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362 S +D VR+V PK R++D + S+ + +E+ LN+ ++ P L IL Sbjct: 323 SGKDAPVRLVFEPKTRTIDQTEFVNSLLAHTSLESNAVLNLVMIGEDGRPAQKGLASILG 382 Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422 EW+ R+ + RR R+ ++ R+ IL+G +I +LNIDE+I IIR D+PK ++S F Sbjct: 383 EWVRFRQATVTRRCRHRLGKVNDRIHILEGRMIVFLNIDEVIRIIREADEPKAALISAFG 442 Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482 LTE Q D IL +RLR L +LE+ +I+ EL+ L AEK K++ LL N+ A + + Sbjct: 443 LTERQADDILEIRLRQLARLEKIKIEKELEELRAEKAKLEELLA------NESAMKRLMI 496 Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542 KEI + + G R T + + +AT +A + EP+TVV+S +GW+R+LK H +D ++ Sbjct: 497 KEIEADAKQYGDERRTLIQQEK--RATF-EAKVVDEPVTVVVSQKGWVRALKGHGLDPAS 553 Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602 FK GD L A T D ++ + G+ Y++ L GRG G + LI+L + Sbjct: 554 FSFKAGDGLYAAFQCRTPDTLIAWGSTGRVYSVAVQVLPGGRGDGVPVTSLIELESGSHL 613 Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD--H 660 + F + LL+ SS G FI + ++++ + GK+F+ + + + V D Sbjct: 614 LHYFAAPAEQPLLLASSNGFGFIAKIGDMVSRVKAGKSFMTIDTGAAPLAPMPVLPDASQ 673 Query: 661 VAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719 VA + +LL+F +D++ +S G+GV L + D + V I + GR Sbjct: 674 VACLSSGGRLLVFGMDEMKTLSGGGRGVILMAL-DAKETLVQALAIDAAGVVLTGTGRGG 732 Query: 720 NRSENDLLG 728 E L G Sbjct: 733 KAQEEALAG 741 >gi|67906499|gb|AAY82606.1| predicted topoisomerase IV subunit A [uncultured bacterium MedeBAC35C06] Length = 743 Score = 506 bits (1304), Expect = e-141, Method: Compositional matrix adjust. Identities = 276/736 (37%), Positives = 448/736 (60%), Gaps = 22/736 (2%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 +SL+ E+ YL YA+ I +RA+P++ DG KPV RRI++AMSE+GLD G+ +KKSAR V Sbjct: 8 ISLKKYAEDAYLNYAMYVILDRALPNIGDGLKPVQRRILYAMSELGLDAGSKYKKSARTV 67 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQ 138 G+VIGK HPHGD + Y+++V +AQ F +YPL+ GQGN+G+ D S AA RYTE+++T+ Sbjct: 68 GDVIGKFHPHGDSAAYEAMVLMAQDFSFKYPLVDGQGNWGSQDDPKSFAAMRYTESKLTK 127 Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198 A+L++ + VD++ ++ EPV+FP+K P++L NGTSGIAVGMAT I SHN+ E Sbjct: 128 FAKLLIDELKAGTVDWQPNFDGSLLEPVIFPAKVPSILLNGTSGIAVGMATDISSHNINE 187 Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258 + +A + +++NP+ + + LL+ I GPDF IV + E + E Y GRGGF+++A W Sbjct: 188 VLDATIHVLENPKSTTKDLLKIIKGPDFSNNAKIVANSEELFEIYSTGRGGFKIQANWDK 247 Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES--AEDVRIVLFPK 316 E IV+T +PYQ S+++E+IA+ ++ K++P++ D+ DE E VR+V+ K Sbjct: 248 E-----GNDIVITSLPYQASGSKILEQIADQMLNKKVPMIVDLADEGDHQEPVRLVISLK 302 Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376 + ++ D +M +F +D++ + NMN++S+ P+V LD +LKEW+ R+ + R+ Sbjct: 303 SNRVNADDVMNHLFATTDLQKSYRFNMNLISLSGNPRVFALDELLKEWIKFRKITVTRKL 362 Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRL 436 R+ ++ R+ IL GL I YLNIDE+I IIR D+PK + +F L++ QV+AIL +RL Sbjct: 363 ENRLDQVNDRLHILDGLAIVYLNIDEVIKIIRESDEPKKELSKKFKLSDIQVNAILEIRL 422 Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496 R L KLE+ +I++E + L E+ +I+ +L S + I E+ E+K+ F + R+ Sbjct: 423 RQLAKLEQIKIETEQNKLSEEQSEIEKILASRSRLKTLIKNELIEIKQEFGE-----ERK 477 Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALH 556 + E S A K ++ I EP+T+V+S GWIRS K H +D S+L ++ D L+ Sbjct: 478 SPIIESSSA-KVFSEEETIVTEPVTIVLSKAGWIRSAKGHEIDPSSLSYRGDDLLQDFCR 536 Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLV 616 + + L+++GKAYTL A +L S RG G+ I I + + + + K +V Sbjct: 537 GKSNQNTVFLASNGKAYTLSAHSLPSARGLGDPITGRISADSGIIFKSCAIGEQEDKYVV 596 Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENR--KLLIFS 674 +S G +I + + +I+N + G+ F+KV + +K DH +V + ++LIF+ Sbjct: 597 SNSAGFGYISDFASMISNKKSGRAFMKVPEGADVHKAIKYREDHEFIVAISNIGRMLIFN 656 Query: 675 IDQIPEMSRGKGVRL-----QSYKDGGISDV-ICFKICEGLTWIDSAGRSYNRSENDLLG 728 I+++P + +GKG ++ +K G S I E + IDS + DL Sbjct: 657 IEELPFLQKGKGNKIINIPTPKFKSGEESMTHIELLAPESILRIDSGKQHMRLKFKDLQN 716 Query: 729 WLGKRGGVGSLVPKGF 744 ++ R G+++P+G+ Sbjct: 717 YISTRAKRGNMLPQGY 732 >gi|167835908|ref|ZP_02462791.1| DNA topoisomerase IV subunit A [Burkholderia thailandensis MSMB43] Length = 772 Score = 506 bits (1304), Expect = e-141, Method: Compositional matrix adjust. Identities = 290/729 (39%), Positives = 426/729 (58%), Gaps = 34/729 (4%) Query: 23 RFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEV 82 R+A E +YL YA+S +K RA+PD+ DG KPV RRI++AM+EMGL A KSAR+VG+V Sbjct: 24 RYA-ERQYLDYAVSVVKGRALPDVSDGQKPVQRRILYAMNEMGLGDNAKPVKSARVVGDV 82 Query: 83 IGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAEL 142 +GK HPHGDQS YD+LVRLAQ F RYPLI GQGNFG+ DGD AAA RYTEAR+T +A+L Sbjct: 83 LGKYHPHGDQSAYDALVRLAQDFSMRYPLIDGQGNFGSRDGDGAAAMRYTEARLTPIAKL 142 Query: 143 ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEA 202 +L +DE VDF Y+ EP + P + P +L NG SGIAVG+AT IPSHN++E+ A Sbjct: 143 LLDEIDEGTVDFMPNYDGSFDEPKLLPGRLPFVLLNGASGIAVGLATEIPSHNLREVAAA 202 Query: 203 ALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVG 262 A+ALI +P + +L++ + GPDFP GG I+ S I +Y GRG +VRARW +E++ Sbjct: 203 AVALIRHPALPHAELMQLVPGPDFPGGGQIISSDAEISAAYETGRGSLKVRARWKIEDLA 262 Query: 263 RGSWCIVVTEIPYQVQKSRLIEKIAELIIAK------------------RIPLLEDIRDE 304 RG W +VVTE+P +++E+I EL K + LL+ +RDE Sbjct: 263 RGQWQLVVTELPPNTSCQKVLEEIEELTNPKLKAGKKTLTQEQINTKKAMLDLLDAVRDE 322 Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362 S +D VR+V PK R++D + S+ + +E+ LN+ ++ P L IL Sbjct: 323 SGKDAPVRLVFEPKTRTIDQTEFVNSLLAHTSLESNAALNLVMIGEDGRPAQKGLASILG 382 Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422 EW+ R+ + RR R+ ++ R+ IL+G +I +LNIDE+I IIR D+PK ++S F Sbjct: 383 EWVRFRQATVTRRCRHRLGKVNDRIHILEGRMIVFLNIDEVIRIIRESDEPKAALISAFG 442 Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482 LTE Q D IL +RLR L +LE+ +I+ EL+ L AEK K++ LL N+ A + + Sbjct: 443 LTERQADDILEIRLRQLARLEKIKIEKELEELRAEKAKLEELLA------NESAMKRLMI 496 Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542 KEI + + G R T + + +AT +A + EP+TVV+S +GW+R+LK H +D ++ Sbjct: 497 KEIETDAKQYGDERRTLIQQEK--RATF-EAKVVDEPVTVVVSQKGWVRALKGHGLDPAS 553 Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602 FK GD L A T D ++ + G+ Y++ L GRG G + LI+L + Sbjct: 554 FSFKAGDGLYAAFQCRTPDTLIAWGSTGRVYSVSVQVLPGGRGDGVPVTSLIELESGSHL 613 Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD--H 660 + F + LL+ SS G F+ + ++++ + GK+F+ + + + V D Sbjct: 614 LHYFAAPAEQPLLLASSNGFGFVAKVGDMVSRVKAGKSFMTIDAGAAPLAPMPVLPDAAQ 673 Query: 661 VAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719 VA + +LL+F +D++ +S G+GV L + D + V I + GR Sbjct: 674 VACLSSGGRLLVFGMDEMKALSGGGRGVILMAL-DAKETLVQALAINAAGVVLTGTGRGG 732 Query: 720 NRSENDLLG 728 E L G Sbjct: 733 KAQEEALAG 741 >gi|332529074|ref|ZP_08405039.1| DNA topoisomerase IV subunit A [Hylemonella gracilis ATCC 19624] gi|332041518|gb|EGI77879.1| DNA topoisomerase IV subunit A [Hylemonella gracilis ATCC 19624] Length = 792 Score = 506 bits (1304), Expect = e-141, Method: Compositional matrix adjust. Identities = 266/708 (37%), Positives = 406/708 (57%), Gaps = 57/708 (8%) Query: 30 YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF----GAAFKKSARIVGEVIGK 85 YL YALS +K RA+PD+ DG KPV RRI++AM MGL + A KSAR+VG+V+G+ Sbjct: 27 YLEYALSVVKGRALPDVSDGQKPVQRRILYAMERMGLGYSGNTAAKPVKSARVVGDVLGR 86 Query: 86 LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145 HPHGDQ+ YD+LVR+AQ F QRYPLI GQGNFG+ DGD AAA RYTEAR+ +++ L+L Sbjct: 87 FHPHGDQAAYDALVRMAQDFAQRYPLIDGQGNFGSRDGDGAAAMRYTEARLAKISSLLLD 146 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 +DE VDF Y+ EP P++ P L NG SGIAVG+AT IPSHN+ E+ A +A Sbjct: 147 EIDEGTVDFMPNYDGSTEEPKQLPARLPFTLLNGASGIAVGLATEIPSHNISEVAAACVA 206 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265 LI P++ E+L E + GPD+P GG I+ + I E+YR GRG +VRARW +EE+ RG Sbjct: 207 LIKTPKLKDEELFELLPGPDYPGGGQIISAEADIAEAYRTGRGSLKVRARWKIEELARGQ 266 Query: 266 WCIVVTEIPYQVQKSRLIEKIAEL------------------IIAKRIPLLEDIRDESAE 307 W +VVTE+P V +++E+I EL + + + +L+ +RDES++ Sbjct: 267 WQLVVTELPPGVSTQKVLEEIEELSNPKVKAGKKTVTQEQTQLKSTLLSVLDGVRDESSK 326 Query: 308 D--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365 D VR+V PK +D + L+ ++ + +ET P+N+ ++ + P + +L+EW+ Sbjct: 327 DAPVRLVCEPKTSKIDQNELITTLLAHTSLETSAPINLTMVGLDGKPVQKSMRQMLEEWI 386 Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425 A RR+ + RRS R+ + R+ IL+G LN+DE+I IIRN D+PKP ++ RF L++ Sbjct: 387 AFRRQTIARRSQHRLGKVQDRIHILEGRQTVLLNVDEVIKIIRNSDEPKPALIKRFRLSD 446 Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485 Q + IL +RLR L +LE +I+ EL L +++++ +L S A VKEI Sbjct: 447 RQAEDILEIRLRQLARLEAIKIEQELAELRGKEKELQDILGS------PAALRKLMVKEI 500 Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545 + + G R T + A+K + + + EP+TVV+S +GW+R+ + H D ++ F Sbjct: 501 EADAKAFGDARRTLIQ---AEKKAVAEVKVIDEPVTVVVSQKGWVRARQGHGHDAASFAF 557 Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605 K GD L T D +L ++G+ Y++P L RG G+ + +++L +V Sbjct: 558 KAGDGLYGTFECRTVDVMLAFGSNGRVYSVPVSALPGARGDGQPLTTMVELEAGTQLVHY 617 Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK---------V 656 + ++ LL+ +S G F+ + +++ + GK F+ S+ V + Sbjct: 618 YAGPASAWLLLSTSGGYGFLAQVEHMVSRQKGGKAFINCGSDGTPDTVCRPSMAHAPNPA 677 Query: 657 TG--------------DHVAVVGENRKLLIFSIDQI-PEMSRGKGVRL 689 TG HV V ++L F I ++ P S G+G+ L Sbjct: 678 TGVVASAAEGGLHSPASHVVCVSTGGRILSFQIGELKPMPSGGRGLML 725 >gi|303251555|ref|ZP_07337729.1| DNA topoisomerase IV subunit A [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|302649553|gb|EFL79735.1| DNA topoisomerase IV subunit A [Actinobacillus pleuropneumoniae serovar 6 str. Femo] Length = 748 Score = 506 bits (1304), Expect = e-141, Method: Compositional matrix adjust. Identities = 268/743 (36%), Positives = 448/743 (60%), Gaps = 25/743 (3%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 E V+ + ++ E+ YL Y++ I +RA+P + DG KPV RRII+AMSE+GL+ A +KK Sbjct: 8 EGVEQMPIKRFTEDAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAMSELGLNASAKYKK 67 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTE 133 SAR VG+V+GK HPHGD + Y+++V +AQPF RYPLI GQGN+G D S AA RYTE Sbjct: 68 SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLIDGQGNWGAPDDPKSFAAMRYTE 127 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 ++++++AE++L + + VD++ ++ EP P++ P++L NGT GIAVGMAT IP Sbjct: 128 SKLSKMAEVLLGELGQGTVDYQPNFDGSLEEPKYLPARLPHILLNGTMGIAVGMATDIPP 187 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E+ EA++ L++NP+ S+ +L+ + GPD+PT I+ + I + Y G+G ++R Sbjct: 188 HNINELAEASVMLLENPKASLAELMTVVQGPDYPTEAEIITPKADIAKMYEQGKGSIKMR 247 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRI 311 A W E+ IV++ +P+Q S++IE+IA + K++P+++DIRDES + +RI Sbjct: 248 AVWKKED-----GEIVISALPHQASPSKVIEQIATQMRNKKLPMVDDIRDESDHENPIRI 302 Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371 VL P++ +D + LM+ +F +D+E + +NMN++ + P V L IL EWL RR Sbjct: 303 VLVPRSNRIDFEALMDHLFATTDLEKSYRVNMNMIGLDGKPAVKNLHTILTEWLVFRRTT 362 Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431 + RR ++R+ I R+ IL GL+IA+LNIDE+I IIRNED+PK +++RF+L+E Q +AI Sbjct: 363 VTRRLNYRLDKILNRLHILDGLMIAFLNIDEVIEIIRNEDEPKTALMARFNLSEAQAEAI 422 Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491 LNLRLR L KLEE+++++E L E++++ L S ++ I EI+ + F+ Sbjct: 423 LNLRLRHLAKLEEHELQAEKSQLEKERDELQLTLGSERRLNTLIKKEIQADAKAFASP-- 480 Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551 RR+ E + A KA + + E +TV++S +GW+R K H +D+ L ++ GD Sbjct: 481 ---RRSPLVERAEA-KAISESDLTPTEDVTVILSEKGWVRCAKGHDIDVQGLSYRAGDGY 536 Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611 + + ++ L + G+AY L +L S R GE + I L + + +S Sbjct: 537 LAHAYGRSNQPVVFLDSTGRAYALDPTSLPSARSQGEPLTGKITLPDGATVQQVLMANSD 596 Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVAVVGENR 668 K+L+ S G FI ++++ + GK + ++ K+ +L+ + + Sbjct: 597 TKVLMASDSGYGFICSFEDLVSRNKAGKAVISLTENAKVLPPQLIDNEAELSLVAMSSVG 656 Query: 669 KLLIFSIDQIPEMSRGKGVRL-----QSYKDGG--ISDVICFKICEGLTWIDSAGRSYNR 721 ++L+F I ++P++S+GKG ++ Q+ K+G ++ ++ K + L ++ S R Sbjct: 657 RMLVFPITELPQLSKGKGNKIINISAQAAKEGNELLARLLLVKPTQSLVFV-SGKRKITL 715 Query: 722 SENDLLGWLGKRGGVGSLVPKGF 744 +D+ + G+R GS + +G Sbjct: 716 KPSDIDNYRGERARKGSQLVRGL 738 >gi|296108660|ref|YP_003620361.1| DNA topoisomerase IV subunit A [Legionella pneumophila 2300/99 Alcoy] gi|295650562|gb|ADG26409.1| DNA topoisomerase IV subunit A [Legionella pneumophila 2300/99 Alcoy] Length = 751 Score = 506 bits (1304), Expect = e-141, Method: Compositional matrix adjust. Identities = 289/755 (38%), Positives = 443/755 (58%), Gaps = 35/755 (4%) Query: 6 ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65 I N N + E+ L E+ YL Y++ I +RA+P + DG KPV RRI++AMSE+G Sbjct: 4 IPNMNEVTEKK----PLTEFTEKAYLDYSMYVILDRALPSIADGLKPVQRRIVYAMSELG 59 Query: 66 LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124 L A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF RYP + GQGN+G+ D Sbjct: 60 LKATAKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPFVDGQGNWGSPDDPK 119 Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184 S AA RYTEAR++ A+++L + + VD+ D ++ EP + P++ PN+L NG +GIA Sbjct: 120 SFAAMRYTEARLSHYADVLLGELLQGTVDWVDNFDGTLQEPALLPARLPNILLNGATGIA 179 Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244 VGMA+ I HN+ E+ A + L+DNP+ I+ + EYI GPDFPT I+ E+I Y Sbjct: 180 VGMASDILPHNLTEVANACIHLLDNPQADIKTICEYIKGPDFPTEAEIISPSETIRAMYE 239 Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304 G G ++RA + E+ IV+T +PYQV +R++E+IA + K++P++ED+RDE Sbjct: 240 SGNGSIKMRAIYTQEKQN-----IVITALPYQVSGARVMEQIALQMQQKKLPMVEDLRDE 294 Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362 S + R+V+ P++ +D + LM +F +D+E + +N N++ + P+V L IL Sbjct: 295 SDHEHPTRLVIIPRSNRVDIESLMSHLFATTDLERSYRVNFNMIGLDGKPRVKGLLAILT 354 Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422 EWL R + RR FR++ + R+ IL+GLLIAYLNIDE+IAIIR ++PK ++SRF+ Sbjct: 355 EWLEFRLTTVKRRLQFRLEKVLERIHILEGLLIAYLNIDEVIAIIREHEQPKQGLISRFN 414 Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482 LTE Q +AIL ++LR L KLEE +++ ELD L E++ + L S + EI + Sbjct: 415 LTERQAEAILEMKLRHLAKLEEIKLRGELDELSDERDTLQKTLASHSLLKELVKEEITKD 474 Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQA-MIEKEPITVVISNRGWIRSLKSHSVDLS 541 ++ F DL RR+ ++R D L++ ++ EPITVV+S GW+R+ K H VD Sbjct: 475 RDEFG---DL--RRSPI--ITREDSQALKEEDILPNEPITVVLSKNGWVRAAKGHDVDGK 527 Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD 601 L +K GD K A T ++L +GK Y+LP L S RG GE L LN + Sbjct: 528 ELSYKAGDEFKAQTLARTNQQVLFFDGEGKVYSLPGHALPSARGQGEP--LTGKLNPAEG 585 Query: 602 IVTAFVY--DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKV 656 ++ + + K+L+ + G FI + ++ R GK +K+S + +L+ Sbjct: 586 VLFEAIVGGEPEQKVLLATDSGYGFIAKIEDLYVKNRNGKACIKLSENSHILPPRLIPNR 645 Query: 657 TGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSY-------KDGGISDVICFKICEGL 709 VA +LLIFS++++PE+SRGKG +L S ++ I D+ + L Sbjct: 646 EQLFVACATNVGRLLIFSLEELPELSRGKGNKLISIPVAKAVSREEYIVDMQVLTTNDSL 705 Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGF 744 T + + R + DL + G+RG G+ +P+G Sbjct: 706 T-VHAGKRHFTLKGEDLTHYKGERGRRGNRLPRGL 739 >gi|209696077|ref|YP_002264007.1| DNA topoisomerase IV subunit A [Aliivibrio salmonicida LFI1238] gi|208010030|emb|CAQ80353.1| topoisomerase IV subunit A [Aliivibrio salmonicida LFI1238] Length = 756 Score = 506 bits (1304), Expect = e-141, Method: Compositional matrix adjust. Identities = 278/744 (37%), Positives = 437/744 (58%), Gaps = 23/744 (3%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 E V+ + LR E+ YL Y++ I +RA+P + DG KPV RRII AMSE+GL A +KK Sbjct: 8 EGVEQLPLRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIFAMSELGLSANAKYKK 67 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTE 133 SAR VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S AA RYTE Sbjct: 68 SARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 127 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 +++++ A+++L + + VD++ ++ EP + P++ P++L NG GIAVGMAT IP Sbjct: 128 SKLSKFADVLLGEISQGTVDWQPNFDGTMKEPKILPARLPHILLNGIMGIAVGMATDIPP 187 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HNV+E+ A + L+DNP+ +++++ +I GPD+PT I+ S I + Y GRG ++R Sbjct: 188 HNVREVANATVHLLDNPKADLDEVMNFIQGPDYPTEAEIITSHSDIKKIYSTGRGSVKMR 247 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRI 311 A W E GS IV+T +P+QV S+L+E+IA + AK++P+++D+RDES + RI Sbjct: 248 AVWHKE----GS-DIVITALPHQVSGSKLLEQIANQMRAKKLPMVDDLRDESDHENPTRI 302 Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371 V+ P++ ++ + LM +F +D+E F +N+N++ + PQV L IL EW+ RR Sbjct: 303 VIVPRSNRIEAEPLMNHLFASTDLEKSFRVNLNMIGLDLRPQVKGLVSILNEWIEFRRTT 362 Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431 + +R R+ I R+ IL GLL AYLNIDE+I IIR ED PK +++RF LT Q +AI Sbjct: 363 VRKRLQHRLDKILARLHILDGLLAAYLNIDEVIEIIRTEDDPKHELMTRFDLTAIQAEAI 422 Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491 L ++LR L KLEE +I+ E D L E+++++ LL S ++ I EI E F Sbjct: 423 LEIKLRQLAKLEEIKIRGEQDELAKERDQLEKLLGSERRLSTLIKKEILADAEKFGDD-- 480 Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551 RR+ E A KA ++ +I E ITV++S++GWIR K H VD + L+FK GD Sbjct: 481 ---RRSPLIERDEA-KAMTERDLIPSEAITVILSDKGWIRHAKGHEVDPTTLNFKSGDKY 536 Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611 H + + + +G++Y L + L S R GE I +++ I + + Sbjct: 537 LTHAHGKSNAPAVFIGNNGRSYALESHTLPSARSQGEPITGRLNITAGSQITHVVMGEED 596 Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE---KMKLVVKVTGDHVAVVGENR 668 L+ S G F+ + S++++ + GKT L + + V + D + + Sbjct: 597 QTWLISSDAGYGFVCKGSDLLSKNKNGKTLLTLPDNSLVMNPETVSDLDSDEILAITNEG 656 Query: 669 KLLIFSIDQIPEMSRGKG---VRLQSYKDGGISDVICF--KICEGLTWIDSAG-RSYNRS 722 ++L+F I +P++ +GKG + + + + + + + + +G T AG R Sbjct: 657 RMLLFPIKDLPQLGKGKGNKIINIPAARSKSRDEFLSYLLPLPQGATITLYAGKRKLGLK 716 Query: 723 ENDLLGWLGKRGGVGSLVPKGFPR 746 +DL + G+RG GSL+P+G R Sbjct: 717 PSDLDNFRGERGRRGSLLPRGLQR 740 >gi|45644631|gb|AAS73019.1| predicted topoisomerase IV subunit A [uncultured marine gamma proteobacterium EBAC20E09] Length = 747 Score = 506 bits (1304), Expect = e-141, Method: Compositional matrix adjust. Identities = 257/683 (37%), Positives = 429/683 (62%), Gaps = 16/683 (2%) Query: 12 LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71 + ++ ++SL+ E+ YL YA+ I +RA+P++ DG KPV RRI++AMSE+GLD + Sbjct: 1 MTKDKFDSISLKKYAEDSYLNYAMYVILDRALPNISDGLKPVQRRILYAMSELGLDASSK 60 Query: 72 FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYR 130 +KKSAR VG+VIGK HPHGD + Y+++V +AQ F +YPL+ GQGN+G+ D S AA R Sbjct: 61 YKKSARTVGDVIGKFHPHGDSAAYEAMVLMAQNFSFKYPLVDGQGNWGSQDDPKSFAAMR 120 Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190 YTE+++T A L++ + VD++ ++ EPV+FPSK P +L NGTSGIAVGMAT Sbjct: 121 YTESKLTSFANLLISELKSGTVDWQPNFDGSLLEPVIFPSKLPVILLNGTSGIAVGMATD 180 Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250 IPSHN+ E+ +A + +++ P+ + LL+ I GPDF I+ + E + E Y GRGGF Sbjct: 181 IPSHNINEVIDATVKILEKPKSELNDLLKIIKGPDFSNAAPIIVNNEELQEMYSSGRGGF 240 Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-- 308 +++A+W E+ I++ +PYQ S+++E+IAE ++ K++P++ D+ DE + Sbjct: 241 KIQAQWKQEKN-----SIIINSLPYQASGSKILEQIAEQMLNKKLPMVVDLADEGDHEDP 295 Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368 VR+V+ K+ ++ + LM +F +D++ + +NMN++S+ P+V PL +LKEWLA R Sbjct: 296 VRLVITLKSNRVNAEDLMNHLFASTDLQKSYRMNMNLISLKGGPKVFPLVDLLKEWLAFR 355 Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQV 428 ++ + R+ R+ ++ R+ IL+GLL +++IDE+I IIR D+PK ++ F L+E Q Sbjct: 356 KDTVKRKLEHRLDQVNDRLHILEGLLSIFIDIDEVIKIIRKSDEPKKDLIKAFKLSEIQA 415 Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488 +AIL ++LR L KLE+ +++ E +NL E+ +I+ +L S + I E+ E+KE+F + Sbjct: 416 NAILEIKLRQLAKLEQIKLEDEKNNLDNEQNEIEKVLKSKARLKTLIKKELIEIKEMFGE 475 Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548 R++ E S A K ++ + EPITVV+S GWIRS K H +D +L ++ Sbjct: 476 -----ERKSPIIESSNA-KVFSEEDTLVTEPITVVLSKAGWIRSAKGHDIDPHSLSYRGD 529 Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608 D+L+ + + L ++GKAY++P+ +L S RG GE I ++ + +++ + Sbjct: 530 DNLQDFARGKSNQLAVFLDSNGKAYSIPSHSLPSARGMGEPITGRLNADSGVQFISSIIG 589 Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH--VAVVGE 666 + K L++++ G +I E + N + G+ F+K+ KM + + DH +A V Sbjct: 590 EDNGKYLIMNTAGYGYISEFKNMTTNKKTGRAFMKLPEHAKMLKAIPIREDHSYIAAVSN 649 Query: 667 NRKLLIFSIDQIPEMSRGKGVRL 689 KLLIF ++++P + +GKG ++ Sbjct: 650 IGKLLIFKLEELPILGKGKGNKI 672 >gi|307256600|ref|ZP_07538381.1| DNA topoisomerase 4 subunit A [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|307261034|ref|ZP_07542716.1| DNA topoisomerase 4 subunit A [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306865010|gb|EFM96912.1| DNA topoisomerase 4 subunit A [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306869336|gb|EFN01131.1| DNA topoisomerase 4 subunit A [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 748 Score = 506 bits (1303), Expect = e-141, Method: Compositional matrix adjust. Identities = 268/743 (36%), Positives = 448/743 (60%), Gaps = 25/743 (3%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 E V+ + ++ E+ YL Y++ I +RA+P + DG KPV RRII+AMSE+GL+ A +KK Sbjct: 8 EGVEQMPIKRFTEDAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAMSELGLNASAKYKK 67 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTE 133 SAR VG+V+GK HPHGD + Y+++V +AQPF RYPLI GQGN+G D S AA RYTE Sbjct: 68 SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLIDGQGNWGAPDDPKSFAAMRYTE 127 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 ++++++AE++L + + VD++ ++ EP P++ P++L NGT GIAVGMAT IP Sbjct: 128 SKLSKMAEVLLGELGQGTVDYQPNFDGSLEEPKYLPARLPHILLNGTMGIAVGMATDIPP 187 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E+ EA++ L++NP+ S+ +L+ + GPD+PT I+ + I + Y G+G ++R Sbjct: 188 HNINELAEASVMLLENPKASLAELMTVVQGPDYPTEAEIITPKADIAKMYEQGKGSIKMR 247 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRI 311 A W E+ IV++ +P+Q S++IE+IA + K++P+++DIRDES + +RI Sbjct: 248 AVWKKED-----GEIVISALPHQASPSKVIEQIATQMRNKKLPMVDDIRDESDHENPIRI 302 Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371 VL P++ +D + LM+ +F +D+E + +NMN++ + P V L IL EWL RR Sbjct: 303 VLVPRSNRIDFEALMDHLFATTDLEKSYRVNMNMIGLDGKPAVKNLHTILTEWLVFRRTT 362 Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431 + RR ++R+ I R+ IL GL+IA+LNIDE+I IIRNED+PK +++RF+L+E Q +AI Sbjct: 363 VTRRLNYRLDKILNRLHILDGLMIAFLNIDEVIEIIRNEDEPKTALMARFNLSEAQAEAI 422 Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491 LNLRLR L KLEE+++++E L E++++ L S ++ I EI+ + F+ Sbjct: 423 LNLRLRHLAKLEEHELQAEKSQLEKERDELQLTLGSERRLNTLIKKEIQADAKAFASP-- 480 Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551 RR+ E + A KA + + E +TV++S +GW+R K H +D+ L ++ GD Sbjct: 481 ---RRSPLVERAEA-KAISESDLTPTEDVTVILSEKGWVRCAKGHDIDVQGLSYRAGDGY 536 Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611 + + ++ L + G+AY L +L S R GE + I L + + +S Sbjct: 537 LAHAYGRSNQPVVFLDSTGRAYALDPTSLPSARSQGEPLTGKITLPDGATVQQVLMANSD 596 Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVAVVGENR 668 K+L+ S G FI ++++ + GK + ++ K+ +L+ + + Sbjct: 597 TKVLMASDSGYGFICSFEDLVSRNKAGKAVISLTENAKVLPPQLIDNEAELSLVAMSSVG 656 Query: 669 KLLIFSIDQIPEMSRGKGVRL-----QSYKDGG--ISDVICFKICEGLTWIDSAGRSYNR 721 ++L+F I ++P++S+GKG ++ Q+ K+G ++ ++ K + L ++ S R Sbjct: 657 RMLVFPITELPQLSKGKGNKIINISAQAAKEGNELLARLLLVKPTQSLVFV-SGKRKITL 715 Query: 722 SENDLLGWLGKRGGVGSLVPKGF 744 +D+ + G+R GS + +G Sbjct: 716 KPSDIDNYRGERARKGSQLVRGL 738 >gi|121998761|ref|YP_001003548.1| DNA topoisomerase IV subunit A [Halorhodospira halophila SL1] gi|121590166|gb|ABM62746.1| DNA topoisomerase IV subunit A [Halorhodospira halophila SL1] Length = 750 Score = 506 bits (1303), Expect = e-141, Method: Compositional matrix adjust. Identities = 281/736 (38%), Positives = 428/736 (58%), Gaps = 22/736 (2%) Query: 22 LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81 LR E YL Y++ I +RA+P + DG KPV RRI++AMSE+GL A +KKSAR VG+ Sbjct: 14 LREFTERAYLDYSMYVILDRALPHVSDGLKPVQRRIVYAMSELGLSAAAKYKKSARTVGD 73 Query: 82 VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQVA 140 V+GK HPHGD + Y+++V +AQPF RYPLI GQGN+G+ D S AA RYTEAR+T A Sbjct: 74 VLGKYHPHGDAACYEAMVHMAQPFTYRYPLIDGQGNWGSPDDPKSFAAMRYTEARLTPYA 133 Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200 ++L + + V++ ++ EP P++ PN+L NG SGIAVGMAT IP HN++E+ Sbjct: 134 RVLLNELGQGTVEWIPNFDGALQEPERLPARLPNVLLNGGSGIAVGMATDIPPHNLREVV 193 Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEE 260 +A + L+D PE + +L E++ PDFPT ++ RE + Y G G R RARW E Sbjct: 194 DACVHLLDRPEATTAELCEHVPAPDFPTASDVITPREELRTIYERGHGTVRARARW---E 250 Query: 261 VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFPKNR 318 R IV+ +PYQV ++++E+IA I ++++P++ED+RDES D VRIV+ ++R Sbjct: 251 YEREQAQIVIHALPYQVAGAKVMEQIAAQIQSRKLPMVEDLRDESDHDAPVRIVVQLRSR 310 Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378 DP+ +M+ +F +D+E + +++NV+ + P+V L +L EWL+ R E + RR ++ Sbjct: 311 RQDPERVMDHLFATTDLERGYRVHLNVIGLDGRPRVFSLRDLLAEWLSFRTETVRRRLTW 370 Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRS 438 R++ ++ R+ IL+GLL AYLNIDE+IAIIR ED+PKPV++ RF L++ Q +AIL LRLR Sbjct: 371 RLEKVEDRLHILEGLLTAYLNIDEVIAIIREEDEPKPVLMERFGLSDAQAEAILELRLRH 430 Query: 439 LRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTT 498 L +LEE +I+ E +L E++++ + L + Q+ E+ E RR+ Sbjct: 431 LARLEEMKIRGEQGDLERERDELRATLGDAARLREQVKSELLGDAEAHGDE-----RRSP 485 Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAH 558 + A +A + ++ EP+TVV+S +GW+R+ K H VD + L +K GD Sbjct: 486 LVQRGPA-RAMDETELMPSEPVTVVLSEKGWVRAAKGHEVDATGLSYKAGDGYLDHALGR 544 Query: 559 TTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVS 618 + + L + G+AY +PA L S R GE + + + DS + L+ S Sbjct: 545 SNQPAIFLDSTGRAYAVPAHTLPSARSQGEPLTKRLTPPEKARFQSVLAGDSESRWLLAS 604 Query: 619 SKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGENRKLLIFS 674 G F V E+ + R GK L + + V V G V V + +LL+F Sbjct: 605 DAGYGFRVPLRELFSRNRSGKAVLTLPDGAAVLPPVTVPAEADGAEVVVASSDGRLLVFP 664 Query: 675 IDQIPEMSRGKGVRL-----QSYKDGGISDVICFKICEGLTWIDSAGRSYNR-SENDLLG 728 ++++PEM+RGKG +L Q +D V + G AG++ R S +DL Sbjct: 665 LEELPEMARGKGNKLIGIPAQRLRDREEVVVAVAVLPAGAALRVEAGKTGKRLSHSDLEA 724 Query: 729 WLGKRGGVGSLVPKGF 744 + RG G +P+G Sbjct: 725 FRAARGRRGVQLPRGL 740 >gi|251792942|ref|YP_003007668.1| DNA topoisomerase IV subunit A [Aggregatibacter aphrophilus NJ8700] gi|247534335|gb|ACS97581.1| hypothetical protein NT05HA_1220 [Aggregatibacter aphrophilus NJ8700] Length = 750 Score = 506 bits (1303), Expect = e-141, Method: Compositional matrix adjust. Identities = 273/747 (36%), Positives = 450/747 (60%), Gaps = 22/747 (2%) Query: 9 SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68 ++++ E ++ + LR E YL Y++ I +RA+P + DG KPV RRII+AMSE+GL+ Sbjct: 2 TDSINYEGIEQMPLRHFTERAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAMSELGLNA 61 Query: 69 GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAA 127 A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G +D S A Sbjct: 62 AAKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAVDDPKSFA 121 Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187 A RYTE+R+++++E++L + + VD++ ++ EP P++ P++L NGT+GIAVGM Sbjct: 122 AMRYTESRLSKISEVLLAELGQGTVDYQPNFDGTLEEPQYLPARLPHILLNGTTGIAVGM 181 Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247 AT IP HN+ EI +AA+ L+DNP+ +++ LL + GPDFPT I+ +E I + Y+ GR Sbjct: 182 ATDIPPHNINEIADAAVMLLDNPKTTLDDLLTVVQGPDFPTEAEIISPKEEIHKIYQQGR 241 Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307 G ++RA W E+ I+++ +P+Q S++I +IAE + AK++P++EDIRDE+ Sbjct: 242 GSIKMRAAWKKED-----GEIIISALPHQASPSKVIAQIAEQMTAKKLPMVEDIRDEADH 296 Query: 308 D--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365 + VRIV+ P++ +D D +M +F +D+E + +NMN++ + P V L IL EWL Sbjct: 297 ENPVRIVIVPRSNRVDTDAMMAHLFATTDLEKSYRVNMNMIGLDYKPAVKNLLEILTEWL 356 Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425 RR + RR +R+ + R+ IL+GL+IA+LNIDE+I IIR+ED+PK +++RF+L++ Sbjct: 357 TFRRTTVTRRLQYRLDKVLARLHILQGLMIAFLNIDEVIEIIRHEDEPKAELMARFNLSD 416 Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485 Q +AILNLRLR L KLEE+Q+++E L E+ ++ +L S ++ + EI++ + Sbjct: 417 AQAEAILNLRLRHLAKLEEHQLQAEQAELEKERSSLEEILGSERRLNTLLKKEIQQDAKT 476 Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545 ++ RR+ E + A KA + M+ EP+TV++S GW+R K H +D L++ Sbjct: 477 YASP-----RRSPLVERAEA-KAIAENEMLPTEPVTVILSEMGWVRCAKGHDIDPQGLNY 530 Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605 K GD + + + + + G++Y L +L S R GE + + L I Sbjct: 531 KAGDKYLAHAYGKSNQPAVFIDSTGRSYALDPLSLPSARSQGEPLTGKLTLPAGATIDQL 590 Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--KLVVKVTGDHVAV 663 + + LL+ S G FI + ++++A + GK + + K+ L +K + Sbjct: 591 LIENEDQPLLMASDAGYGFICKFADLVARNKAGKALISLPENAKVLPPLTLKNPTALLVA 650 Query: 664 VGENRKLLIFSIDQIPEMSRGKG---VRLQSYKDGGISDVIC--FKICEGLTWIDSAG-R 717 + ++LIF + +PE+S+GKG V + S S+++ I E + + +G R Sbjct: 651 LTSAGRMLIFPVQDLPELSKGKGNKIVTIPSANAKARSELLVRLLLIEENSSLVFHSGKR 710 Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGF 744 DL + +RG G+ +P+G Sbjct: 711 KVTLKPEDLQKFRAERGRKGTQLPRGL 737 >gi|237746616|ref|ZP_04577096.1| topoisomerase IV subunit A [Oxalobacter formigenes HOxBLS] gi|229377967|gb|EEO28058.1| topoisomerase IV subunit A [Oxalobacter formigenes HOxBLS] Length = 772 Score = 506 bits (1303), Expect = e-141, Method: Compositional matrix adjust. Identities = 284/726 (39%), Positives = 422/726 (58%), Gaps = 39/726 (5%) Query: 13 VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72 EE + + L E YL YA+S +K RA+PD+ DG KPV RRI++AM+E+ L A Sbjct: 14 AEEPRETLMLASFAERAYLDYAISVVKGRALPDVCDGQKPVQRRILYAMNELRLAPDAKP 73 Query: 73 KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132 +KSA +VG+V+GKLHPHGDQSVYD+LVR+AQ F RYPLI G GNFG+ DGD AAA RYT Sbjct: 74 RKSAAVVGDVLGKLHPHGDQSVYDALVRMAQDFSLRYPLIDGHGNFGSRDGDGAAAMRYT 133 Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192 EAR+T +A L+L+ + + V+F+D Y+ EP P++ P L NG SGIAVG+AT IP Sbjct: 134 EARLTPIARLLLEEIGQGTVEFQDNYDGSTQEPKRLPARLPFTLLNGASGIAVGLATEIP 193 Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252 SHN+ E+ EAA ALI NP+IS ++L+E + GPDFP GG I+ + +I E YR GRG +V Sbjct: 194 SHNLNEVAEAAKALIRNPKISHDELMEILPGPDFPGGGQIITAPHAISEIYRNGRGSLKV 253 Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR------------------ 294 RARW +EE+ RG W VVTE+P +++E+I E+ K Sbjct: 254 RARWKIEELARGQWQAVVTELPPGTSAQKVLEEIEEITNPKVRNGKKALSPEQISLRQQF 313 Query: 295 IPLLEDIRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVP 352 + +L+ +RDE++ D VR+VL PK++ ++P M+S+ + +E P+N+ ++ + P Sbjct: 314 LGMLDAVRDEASRDAPVRLVLEPKSKRINPGEFMQSLLAHTSLECNTPVNLVMIGIDGRP 373 Query: 353 QVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK 412 + L ILKEW+ R + R+S+R+ +D R+ IL+G LNID +I IIR D+ Sbjct: 374 RQKSLSDILKEWIEFRFVTVRHRTSWRLGRVDDRIHILEGRETVLLNIDRVIRIIRESDE 433 Query: 413 PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQW 472 PK ++ F L+E Q D IL +RLR L +LE+ +I+ EL L EKE + LL+ Sbjct: 434 PKTALIETFRLSEKQADDILEIRLRQLARLEKIRIEQELAELRREKETLHDLLD------ 487 Query: 473 NQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS 532 N + + ++EI + G R T E A+KA + + I EP+TV++S GW+R Sbjct: 488 NPASMKRLVIREIEADRKKFGDIRRTLIE--EAEKAVV-EPKIADEPVTVIVSQNGWVRQ 544 Query: 533 LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL 592 H + LS L FK GDSL A +TD +L S+ G+ YT+ L GRG G I Sbjct: 545 RTGHGLTLSGLSFKSGDSLLAAYECRSTDLLLAFSSTGRIYTVAVHALPGGRGDGMPITT 604 Query: 593 LIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652 + ++ IV F +L+ + G F + +++ + R GK+F+ + +E + Sbjct: 605 FAETGIDETIVRYFAGSPDTTVLISTDSGYGFSAKVADMSSRVRNGKSFISLEKDETLLP 664 Query: 653 VVKVTGDH--VAVVGENRKLLIFSIDQIPE-MSRGKGVRLQSYKDGG-------ISDVIC 702 V ++ D + + N LL+F + ++ +S G+GV L + G +S+ C Sbjct: 665 PVAISPDDKWIGALSGNGHLLLFDMTELRALLSGGRGVILMGLEKGDKLMAARPVSEKGC 724 Query: 703 FKICEG 708 +C+ Sbjct: 725 TVVCQA 730 >gi|256823222|ref|YP_003147185.1| DNA topoisomerase IV subunit A [Kangiella koreensis DSM 16069] gi|256796761|gb|ACV27417.1| DNA topoisomerase IV, A subunit [Kangiella koreensis DSM 16069] Length = 746 Score = 506 bits (1302), Expect = e-141, Method: Compositional matrix adjust. Identities = 286/745 (38%), Positives = 432/745 (57%), Gaps = 25/745 (3%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 E ++ SL E+ YL Y++ I +RA+P + DG KPV RRI++AMSE+GL A +KK Sbjct: 4 EGIEKKSLAEFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIVYAMSELGLKATAKYKK 63 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTE 133 SAR VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S AA RYTE Sbjct: 64 SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 123 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 +R+ +EL+L + + V++ ++ EP V P++ PNLL NGT+GIAVGMAT IP Sbjct: 124 SRLAAYSELLLSELGQGTVNWTPNFDGTMDEPEVLPARIPNLLLNGTTGIAVGMATDIPP 183 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E+ +A + L++NP+ + LLE+I GPDFPT I+ R I+E Y GRG R+R Sbjct: 184 HNLAEVGKACVHLLENPKAELPDLLEFIQGPDFPTDAEIITPRADILELYEKGRGSIRMR 243 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRI 311 AR+ E+ IV+T +P+Q S+++E+IA + AK++P++ D+RDES + R+ Sbjct: 244 ARFEKED-----GDIVITSLPHQASGSKILEQIAAQMQAKKLPMVSDLRDESDHENPTRL 298 Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371 V+ P++ +D + LM +F +D+E + +NMN++ + PQV L +LKEWL R E Sbjct: 299 VIEPRSNRVDIEELMRHLFATTDLERTYRVNMNMIGIDGRPQVKNLRVMLKEWLEFRHET 358 Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431 + RR R+ + R+ IL GLLIAYLNIDE+I IIR EDKPK ++ RF L++ Q ++I Sbjct: 359 VRRRLQHRLDKVMDRLHILDGLLIAYLNIDEVIHIIRTEDKPKLKLMERFDLSDRQAESI 418 Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491 L L+LR L KLEE +IK E L E + + L S ++ I EI EV E + Sbjct: 419 LELKLRHLAKLEEMKIKGEQSELEDEADWLQLTLGSKQRMKTLIKKEIEEVIEQYGDD-- 476 Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551 RR+ E A KA + ++ EP+TV++S +GW+R K H VD ++++ GD Sbjct: 477 ---RRSPIVERKEA-KALSETELLPTEPVTVILSEKGWVRCAKGHDVDAVGMNYRSGDKY 532 Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611 + + + L + G+ ++L A L S RG GE + ++ + + + + Sbjct: 533 LDSAQGKSNQYAVFLDSTGRTFSLLANTLPSARGLGEPVTGRVNPIAGAEFMATMMGEDD 592 Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--KLVVKVTGDH--VAVVGEN 667 K L + G F+ + S+++ TR GK FL + S K+ VK + VAV E Sbjct: 593 DKFLFATDAGYGFVAKFSDLVTKTRNGKAFLNLPSGSKVVKPCSVKDSASQFCVAVSNEG 652 Query: 668 RKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKIC------EGLTWIDSAGRSYNR 721 R +L+F + +PE+++GKG ++ S + F I + I S R Sbjct: 653 R-MLVFPLADLPELAKGKGNKIISIPTAKLKLREEFMIAVTAIGEDDSLVIHSGKRHLTL 711 Query: 722 SENDLLGWLGKRGGVGSLVPKGFPR 746 DL + G+RG G +P+GF R Sbjct: 712 KPKDLEHYRGERGRRGHKLPRGFQR 736 >gi|309785334|ref|ZP_07679965.1| DNA topoisomerase IV, A subunit [Shigella dysenteriae 1617] gi|308926454|gb|EFP71930.1| DNA topoisomerase IV, A subunit [Shigella dysenteriae 1617] Length = 726 Score = 506 bits (1302), Expect = e-141, Method: Compositional matrix adjust. Identities = 265/719 (36%), Positives = 436/719 (60%), Gaps = 25/719 (3%) Query: 40 ERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLV 99 +RA+P + DG KPV RRI++AMSE+GL+ A FKKSAR VG+V+GK HPHGD + Y+++V Sbjct: 2 DRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKYHPHGDSACYEAMV 61 Query: 100 RLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTY 158 +AQPF RYPL+ GQGN+G D S AA RYTE+R+++ +EL+L + + D+ + Sbjct: 62 LMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKYSELLLSELGQGTADWVPNF 121 Query: 159 NEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLL 218 + EP + P++ PN+L NGT+GIAVGMAT IP HN++E+ +AA+ALID P+ ++++LL Sbjct: 122 DGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAQAAIALIDQPKTTLDQLL 181 Query: 219 EYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQ 278 + + GPD+PT I+ SR I + Y GRG R+RA W E+ +V++ +P+QV Sbjct: 182 DIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKKED-----GAVVISALPHQVS 236 Query: 279 KSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDME 336 +R++E+IA + K++P+++D+RDES + R+V+ P++ +D D +M +F +D+E Sbjct: 237 GARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRVDMDQVMNHLFATTDLE 296 Query: 337 TRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIA 396 + +N+N++ + P V L IL EWL RR+ + RR ++R++ + +R+ IL+GLL+A Sbjct: 297 KSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRRLNYRLEKVLKRLHILEGLLVA 356 Query: 397 YLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLA 456 +LNIDE+I IIRNED+PKP ++SRF LTE Q +AIL L+LR L KLEE +I+ E L Sbjct: 357 FLNIDELIEIIRNEDEPKPALMSRFGLTETQAEAILELKLRHLAKLEEMKIRCEQSELEK 416 Query: 457 EKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE 516 E++++ +L S ++ N + E++ + + RR+ E A KA + M+ Sbjct: 417 ERDQLQGILASERKMNNLLKKELQADAQAYGDD-----RRSPLQEREEA-KAMSEHDMLP 470 Query: 517 KEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLP 576 EP+T+V+S GW+RS K H +D L++K GDS K A+ + ++ + + G++Y + Sbjct: 471 SEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAID 530 Query: 577 AGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR 636 L S RG GE + + L + + KLL+ S G F+ ++++A R Sbjct: 531 PITLPSARGQGEPLTGKLTLPPGATVDHILMESDDQKLLMASDAGYGFVCTFNDLVARNR 590 Query: 637 KGKTFLKVSSEEKM--KLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRL----- 689 GK + + + +V++ D + + + ++L+F + +P++S+GKG ++ Sbjct: 591 AGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSKGKGNKIINIPS 650 Query: 690 --QSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746 + + G++ + LT I R +L G+RG G+L+ +G R Sbjct: 651 AEAARGEDGLAQLYVLPSQSTLT-IHVGKRKIKLRPEELQKVTGERGRRGTLM-RGLQR 707 >gi|311105322|ref|YP_003978175.1| DNA topoisomerase IV subunit A [Achromobacter xylosoxidans A8] gi|310760011|gb|ADP15460.1| DNA topoisomerase IV, A subunit [Achromobacter xylosoxidans A8] Length = 778 Score = 505 bits (1301), Expect = e-141, Method: Compositional matrix adjust. Identities = 276/743 (37%), Positives = 430/743 (57%), Gaps = 39/743 (5%) Query: 19 AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78 A++L E+ YL YA+S ++ RA+PD+ DG KPV RRI++AM MGL GA KSAR+ Sbjct: 26 AITLARYAEQAYLDYAVSVVRGRALPDVGDGQKPVQRRILYAMQAMGLAAGAKPVKSARV 85 Query: 79 VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138 VG+V+GK HPHGDQ+ YD++VR+AQ F RYPLI GQGNFG+ DGD+AAA RYTEAR+T Sbjct: 86 VGDVLGKYHPHGDQAAYDAMVRMAQDFSLRYPLIDGQGNFGSRDGDNAAAMRYTEARLTP 145 Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198 +A+L+L +DE VDF Y+ EP + P++ P +L NG SGIAVGMAT IP HN++E Sbjct: 146 IAKLLLDELDEGTVDFVPNYDGSQQEPQMLPARLPVMLLNGASGIAVGMATEIPPHNLRE 205 Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258 + +A +ALI +P++ +L I GPDF GG I+ E I + Y GRG +VRARW Sbjct: 206 VAQACVALIKHPQLPDAELHALIPGPDFAGGGQIITPAEDIAQIYAGGRGSLKVRARWQF 265 Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAK------------------RIPLLED 300 EE+ RG W +VVTE+P +++E+I E+ K + LL+ Sbjct: 266 EEMARGQWQLVVTELPPGTSGQKVLEEIEEITNPKVKTGKKSLTPEQTQAKAVMLNLLDA 325 Query: 301 IRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLD 358 +RDES +D VR+V PK +D D + ++ + ME+ +N+ + P+ L Sbjct: 326 VRDESGKDAAVRLVFEPKTSRVDRDEFVNTLLAQTSMESSSSINLVCIGTDGRPRQKGLR 385 Query: 359 GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV 418 IL EW+A R + RR+ +R+ + R+ +L+G ++ YLN+DE+I IR D+P+ ++ Sbjct: 386 DILVEWIAFRTNTVVRRTRYRLDKVIDRIHVLEGRMVVYLNVDEVIQTIRESDEPRAALM 445 Query: 419 SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE 478 RF L+E Q + IL +RLR L +LE ++I+ EL + ++ ++ LL+ N + + Sbjct: 446 ERFKLSERQAEDILEMRLRQLARLEGFKIEQELADKREDQVRLQELLD------NPASLK 499 Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV 538 +KEI + + G R T E A++A L+ +++ EP+TV++S +GW+R+ + H Sbjct: 500 RLLIKEIEADAKQYGDDRRTLIET--AERAVLETKVLD-EPVTVIVSQKGWLRARQGHGH 556 Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNH 598 D S FK+GD L A TTD ++ + +G+ Y++P G L S RG G+ + +IDL Sbjct: 557 DASQFGFKQGDDLYGAFECRTTDTLIAVGDNGRVYSVPVGGLPSARGDGQPVTTMIDLGS 616 Query: 599 NQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV-SSEEKMKLVVKVT 657 IV + L+ + G F + S++++ R GK F+ + +E ++ V Sbjct: 617 GTRIVHTIAAAPDSRWLLATRGGYGFAAKLSDMVSRQRAGKQFITLEEGDELLRPVPLFA 676 Query: 658 G-DHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAG 716 G +A++ K L+F +D++ +S G + DG +D + + G + +AG Sbjct: 677 GAKQLALLSHKGKFLVFGLDEVKTLSGGGRGTILMGLDG--TDKLDQTVPIGAGGLRAAG 734 Query: 717 RSYNRSENDLL------GWLGKR 733 N+ D+L ++GKR Sbjct: 735 IYRNKHTEDILVGDALAPYIGKR 757 >gi|293604500|ref|ZP_06686905.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Achromobacter piechaudii ATCC 43553] gi|292817081|gb|EFF76157.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Achromobacter piechaudii ATCC 43553] Length = 776 Score = 505 bits (1301), Expect = e-141, Method: Compositional matrix adjust. Identities = 276/748 (36%), Positives = 425/748 (56%), Gaps = 41/748 (5%) Query: 19 AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78 A++L E+ YL YA+S ++ RA+PD+ DG KPV RRI+ AM MGL GA KSAR+ Sbjct: 24 AITLARYAEQAYLDYAVSVVRGRALPDVGDGQKPVQRRILFAMQAMGLAAGAKPVKSARV 83 Query: 79 VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138 VG+V+GK HPHGDQ+ YD++VR+AQ F RYPLI GQGNFG+ DGD+AAA RYTEAR+T Sbjct: 84 VGDVLGKYHPHGDQAAYDAMVRMAQDFSLRYPLIDGQGNFGSRDGDNAAAMRYTEARLTP 143 Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198 +A+L+L +DE VDF Y+ EP + P++ P +L NG SGIAVGMAT IP HN++E Sbjct: 144 IAKLLLDELDEGTVDFVPNYDGSQQEPQMLPARLPVMLLNGASGIAVGMATEIPPHNLRE 203 Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258 + +A +ALI P++ +L I GPDF GG I+ I + Y GRG +VRARW Sbjct: 204 VAQACVALIKQPQLPDAELHAMIPGPDFAGGGQIITPAADIAQIYGTGRGSLKVRARWTF 263 Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAK------------------RIPLLED 300 EE+ RG W +V+TE+P +++E+I E+ K + LL+ Sbjct: 264 EEMARGQWQLVITELPPGTSGQKVLEEIEEITNPKVKSGKKSLTPEQTQAKAVMLNLLDA 323 Query: 301 IRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLD 358 +RDES +D VR+V PK +D D + ++ + ME+ +N+ + P+ L Sbjct: 324 VRDESGKDAAVRLVFEPKTSRVDRDEFVNTLLAQTSMESSSSINLVCIGTDGRPRQKGLR 383 Query: 359 GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV 418 IL EW+A R + RR+ FR+ + R+ +L+G ++ YLN+DE+I IR D+P+ ++ Sbjct: 384 DILVEWVAFRTHTVVRRTRFRLDKVTDRIHVLEGRMLVYLNVDEVIQTIRESDEPRAALM 443 Query: 419 SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE 478 RF L+E Q + IL +RLR L +LE ++I+ EL + ++ + LL+ N + Sbjct: 444 ERFKLSERQAEDILEMRLRQLARLEGFKIEQELADKRKDQISLQELLD------NPTTLK 497 Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV 538 +KEI + + G R T E A++A L+ +++ EP+TV++S +GW+R+ + H Sbjct: 498 RLLIKEIEADAKQYGDERRTLIET--AERAVLETKVLD-EPVTVIVSQKGWLRARQGHGH 554 Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNH 598 D S FK+GD L A TTD ++ + +G+ Y++P G L S RG G+ + +IDL Sbjct: 555 DASQFTFKQGDDLYGAFECRTTDTLIAMGDNGRVYSVPVGGLPSARGDGQPVTTMIDLES 614 Query: 599 NQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV-- 656 IV + L+ + G F + S++++ R GK F+ + + ++M V + Sbjct: 615 GTRIVHTIAAAPESRWLLATRGGYGFAAKLSDMVSRQRAGKQFITLETGDEMLRPVPLFE 674 Query: 657 TGDHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSA 715 H+A++ K L+F +D+ +S G+G L SD + + G + + Sbjct: 675 GATHLALLSAKGKFLVFGLDECKSLSGGGRGTILMGLD---ASDKLDQTVPIGARGLRAT 731 Query: 716 GRSYNRSENDLLG------WLGKRGGVG 737 G N+ D+L ++GKR G Sbjct: 732 GIYRNKLTEDILAGDALAPYVGKRARKG 759 >gi|94311455|ref|YP_584665.1| DNA topoisomerase IV subunit A [Cupriavidus metallidurans CH34] gi|93355307|gb|ABF09396.1| DNA topoisomerase IV, subunit A [Cupriavidus metallidurans CH34] Length = 776 Score = 505 bits (1301), Expect = e-140, Method: Compositional matrix adjust. Identities = 269/700 (38%), Positives = 407/700 (58%), Gaps = 28/700 (4%) Query: 13 VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72 +E +++L E YL YA+S +K RA+P++ DG KPV RRI+ AM MGL A Sbjct: 10 ADEPADSLTLARYAERAYLDYAVSVVKGRALPEVADGQKPVQRRILFAMQAMGLRADAKP 69 Query: 73 KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132 KSAR+VGEV+GK HPHGDQS YD+LVRLAQ F RYPLI GQGNFG+ DGD AAA RYT Sbjct: 70 VKSARVVGEVLGKFHPHGDQSAYDALVRLAQDFSLRYPLIDGQGNFGSRDGDGAAAMRYT 129 Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192 EAR+T ++ L+L +D VDF Y+ + EP + P++ P +L NG SGIAVGMAT IP Sbjct: 130 EARLTPISRLLLDEIDMGTVDFLPNYDGSEEEPKLLPARLPFVLLNGASGIAVGMATEIP 189 Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252 HN++E+ A +A+I NP IS+ LL + GPD+P GG I+ I + Y GRG +V Sbjct: 190 PHNLREVAGATVAMIRNPNISLADLLALMPGPDYPGGGQIISPASEIAQIYESGRGSLKV 249 Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAK------------------R 294 RARW +EE+ RG W +VVTE+P +++E+I E+ K Sbjct: 250 RARWTIEEMARGQWQMVVTELPPGTSAQKVLEEIEEITNPKIRTGKKALTPEQTQLKTTM 309 Query: 295 IPLLEDIRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVP 352 + +L+ +RDES +D VR+V PK+++ + ++++ + +E+ P+N+ ++ P Sbjct: 310 LSVLDAVRDESGKDAPVRLVFEPKSKNTEQQDFIQTLLAHTSLESGAPINLVMIGTDGRP 369 Query: 353 QVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK 412 + L IL+EW+ R + RR+ F++ ++ R+ IL+G ++ LNIDE+I IIR D+ Sbjct: 370 RQKGLQEILREWIEFRFATVTRRTRFQLTKVEDRIHILEGRMLVLLNIDEVIRIIRESDE 429 Query: 413 PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQW 472 PKP ++ F L++ Q + IL +RLR L +LE +I+ EL L E+ ++D LL S Sbjct: 430 PKPALIEAFRLSDRQAEDILEIRLRQLARLEAIKIEQELAKLRDEQAELDVLLKSETMMR 489 Query: 473 NQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS 532 +I EI + + +S D RRT E SRA + + EP+TV++S +GW+R+ Sbjct: 490 RRIIKEIEQDAKQYSPE-DKDPRRTLIQEASRA----AAEVKVIDEPVTVIVSGKGWVRT 544 Query: 533 LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL 592 + H D S FK GD+L T D +L ++G+ Y++ L GRG G + Sbjct: 545 RQGHGHDASQFTFKAGDNLYGTFECRTIDTLLAFGSNGRVYSVAVSGLPGGRGDGVPVTT 604 Query: 593 LIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652 LIDL I F + ++L+ ++ GN F+ + ++I + GK F+ + + + Sbjct: 605 LIDLAAGTQIAHTFAGAAEQRMLIATAGGNGFVTKVGDMIGRQKAGKAFVTLDEGDTLLA 664 Query: 653 VVKVTGD--HVAVVGENRKLLIFSIDQIPEMSR-GKGVRL 689 + + HVA N +LL+ +D++ +S G+GV L Sbjct: 665 PTPIGEECTHVACFSANGRLLLAGLDEVKVLSAGGRGVIL 704 >gi|119475094|ref|ZP_01615447.1| DNA topoisomerase IV subunit A [marine gamma proteobacterium HTCC2143] gi|119451297|gb|EAW32530.1| DNA topoisomerase IV subunit A [marine gamma proteobacterium HTCC2143] Length = 753 Score = 505 bits (1301), Expect = e-140, Method: Compositional matrix adjust. Identities = 286/758 (37%), Positives = 455/758 (60%), Gaps = 31/758 (4%) Query: 6 ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65 +S+ + + V+ VSL+ E+ YL Y++ I +RA+P++ DG KPV RRI++AMSE+G Sbjct: 1 MSDQFHIAADGVEQVSLKHYTEKAYLDYSMYVILDRALPNISDGLKPVQRRIVYAMSELG 60 Query: 66 LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG-NIDGD 124 L GA +KKSAR VG+VIGK HPHGD SVY+++V +AQ F RYPL+ GQGN+G + D Sbjct: 61 LKAGAKYKKSARTVGDVIGKYHPHGDSSVYEAMVLMAQNFSYRYPLVDGQGNWGASDDPK 120 Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184 S AA RYTE+++ ++L+L + + V ++ ++ EP V P++ PN+L NGT+GIA Sbjct: 121 SFAAMRYTESKLAAFSDLLLAELGQGTVAWQANFDGTMDEPKVLPARVPNVLLNGTTGIA 180 Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244 VGMAT IP HN++E+ A + L++ P +I++L E+I GPD+PT I+ + + Y+ Sbjct: 181 VGMATDIPPHNLREVVSACIRLLEEPTTTIDQLCEHIQGPDYPTDAEIITPIDDMRNMYK 240 Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304 G+G R+RA W E GS +VVT +P+QV S+++E+IA+ I AK++P++ D+RDE Sbjct: 241 TGKGSIRMRAVWQKE----GS-DVVVTALPHQVSGSKILEQIAQQIHAKKLPMVADLRDE 295 Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362 S + R+V+ PK+ +D + +M +F +D+E + +N+N++ + P+V LD IL Sbjct: 296 SDHENPTRLVIIPKSNRVDIEPMMNHLFASTDLERTYRVNLNMIGIDGGPEVKSLDKILT 355 Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422 EWL R + + RR R+Q ++ R+ L L+I YLN+DE+I IIR E+ PKPV++ RF Sbjct: 356 EWLQFRSDTVRRRLQHRLQKVEERLMRLAALMIVYLNVDEVIRIIREEEYPKPVLIERFD 415 Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482 L E Q + I+ +LR L +LEE +I+SE ++L EKE ++ +L S ++ + E+ EV Sbjct: 416 LVEMQAEYIMETKLRQLARLEEVKIRSEEEDLEKEKENLEQILASARRLKTLVKKELLEV 475 Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542 E + RR+ A KA ++ ++ EP+TVV+S +GW+RS K H +D + Sbjct: 476 AEEYGDD-----RRSPIASRGEA-KAFTEEELMTTEPVTVVLSEKGWVRSAKGHDIDPQS 529 Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602 L +K GDS +A + +++L + GKAYT+ A +L S RG GE + I+ Sbjct: 530 LSYKSGDSFHLAAKGKSNQSVVILDSTGKAYTVAAHSLPSARGQGEPLTGRINSPSGASF 589 Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD--- 659 + + L+ S G F+V+ S++ + GK L + ++ V G Sbjct: 590 EGLMMGRADDLYLLASDAGYGFVVKFSDLQTKNKAGKAALSLPKGARVLQPGMVAGTETE 649 Query: 660 --HVAVVGENRKLLIFSIDQIPEMSRGKG--------VRLQSYKDGGISDVICFKICEGL 709 +VA V ++LIF + ++P MSRGKG RLQ+ ++ ++ I I E Sbjct: 650 LRYVAAVSNEGRMLIFPLTELPTMSRGKGNKIIGIPPSRLQAREEFVVAVAI---INERD 706 Query: 710 TWIDSAGRSY-NRSENDLLGWLGKRGGVGSLVPKGFPR 746 T AG+ Y N ++L ++G+RG G +P+GF + Sbjct: 707 TLRVHAGKRYVNMKFSELDHYMGERGRRGHKLPRGFQK 744 >gi|52843173|ref|YP_096972.1| DNA topoisomerase IV subunit A [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52630284|gb|AAU29025.1| DNA topoisomerase IV subunit A [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 751 Score = 505 bits (1301), Expect = e-140, Method: Compositional matrix adjust. Identities = 291/756 (38%), Positives = 444/756 (58%), Gaps = 37/756 (4%) Query: 6 ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65 I N N + E+ L E+ YL Y++ I +RA+P + DG KPV RRI++AMSE+G Sbjct: 4 IPNMNEVTEKK----PLTEFTEKAYLDYSMYVILDRALPSIADGLKPVQRRIVYAMSELG 59 Query: 66 LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124 L A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF RYP + GQGN+G+ D Sbjct: 60 LKATAKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPFVDGQGNWGSPDDPK 119 Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184 S AA RYTEAR++ A+++L + + VD+ D ++ EP + P++ PN+L NG +GIA Sbjct: 120 SFAAMRYTEARLSHYADVLLGELLQGTVDWVDNFDGTLQEPALLPARLPNILLNGATGIA 179 Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244 VGMA+ I HN+ E+ A + L+DNP+ I+ + EYI GPDFPT I+ E+I Y Sbjct: 180 VGMASDILPHNLTEVANACIHLLDNPQADIKTICEYIKGPDFPTEAEIISPSETIRAIYE 239 Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304 G G ++RA + E+ IV+T +PYQV +R++E+IA + K++P++ED+RDE Sbjct: 240 SGNGSIKMRAIYTQEKQN-----IVITALPYQVSGARVMEQIALQMQQKKLPMVEDLRDE 294 Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362 S + R+V+ P++ +D + LM +F +D+E + +N N++ + P+V L IL Sbjct: 295 SDHEHPTRLVIIPRSNRVDIESLMSHLFATTDLERSYRVNFNMIGLDGKPRVKGLLAILT 354 Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422 EWL R + RR FR++ + R+ IL+GLLIAYLNIDE+IAIIR D+PK ++SRF+ Sbjct: 355 EWLEFRLATVKRRLQFRLEKVLERIHILEGLLIAYLNIDEVIAIIREHDQPKQGLISRFN 414 Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482 LTE Q +AIL ++LR L KLEE +++ ELD L E++ + L S + + E+ V Sbjct: 415 LTERQAEAILEMKLRHLAKLEEIKLRGELDELSDERDTLQKTLAS-----HSLLKEL--V 467 Query: 483 KEIFSKSTD-LGRRRTTFCEVSRADKATLQQA-MIEKEPITVVISNRGWIRSLKSHSVDL 540 KE +K D G R + ++R D L++ ++ EPITVV+S GW+R+ K H VD Sbjct: 468 KEEITKDRDEFGDPRLSPI-ITREDSQALKEEDILPNEPITVVLSKNGWVRAAKGHDVDG 526 Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQ 600 L +K GD K A T ++L +GK Y+LP L S RG GE L LN + Sbjct: 527 KELSYKAGDEFKAQTLARTNQQVLFFDGEGKVYSLPGHVLPSARGQGEP--LTGKLNPAE 584 Query: 601 DIVTAFVY--DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVK 655 ++ + + K+L+ + G FI + ++ R GK +K+S + +L+ Sbjct: 585 GVLFEAIVGGEPEQKVLLATDSGYGFIAKIEDLYVKNRNGKACIKLSENSHILPPRLIPN 644 Query: 656 VTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSY-------KDGGISDVICFKICEG 708 VA +LLIFS++++PE+SRGKG +L S ++ I D+ + Sbjct: 645 REQLFVACATNVGRLLIFSLEELPELSRGKGNKLISIPVAKAVSREEYIVDMQVLTTNDS 704 Query: 709 LTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGF 744 LT + + R + DL + G+RG G+ +P+G Sbjct: 705 LT-VYAGKRHFTLKGEDLTHYKGERGRRGNRLPRGL 739 >gi|148361319|ref|YP_001252526.1| DNA topoisomerase IV subunit A [Legionella pneumophila str. Corby] gi|148283092|gb|ABQ57180.1| DNA topoisomerase IV subunit A [Legionella pneumophila str. Corby] Length = 751 Score = 505 bits (1300), Expect = e-140, Method: Compositional matrix adjust. Identities = 287/755 (38%), Positives = 441/755 (58%), Gaps = 35/755 (4%) Query: 6 ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65 I N N + E+ L E+ YL Y++ I +RA+P + DG KPV RRI++AMSE+G Sbjct: 4 IPNMNEVTEKK----PLTEFTEKAYLDYSMYVILDRALPSIADGLKPVQRRIVYAMSELG 59 Query: 66 LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124 L A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF RYP + GQGN+G+ D Sbjct: 60 LKATAKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPFVDGQGNWGSPDDPK 119 Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184 S AA RYTEAR++ A+++L + + VD+ D ++ EP + P++ PN+L NG +GIA Sbjct: 120 SFAAMRYTEARLSLYADVLLGELLQGTVDWVDNFDGTLQEPALLPARLPNILLNGATGIA 179 Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244 VGMA+ I HN+ E+ A + L+DNP+ I+ + EYI GPDFPT I+ E+I Y Sbjct: 180 VGMASDILPHNLTEVANACIHLLDNPQADIKTICEYIKGPDFPTEAEIISPSETIRAMYE 239 Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304 G G ++RA + E+ IV+T +PYQV +R++E+IA + K++P++ED+RDE Sbjct: 240 SGNGSIKMRAIYAQEKQN-----IVITALPYQVSGARVMEQIALQMQQKKLPMVEDLRDE 294 Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362 S + R+V+ P++ +D + LM +F +D+E + +N N++ + P+V L IL Sbjct: 295 SDHEHPTRLVIIPRSNRVDIESLMSHLFATTDLERSYRVNFNMIGLDGKPRVKGLLAILT 354 Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422 EWL R + RR FR++ + R+ IL+GLLIAYLNIDE+IAIIR ++PK ++SRF+ Sbjct: 355 EWLEFRLTTVKRRLQFRLEKVLERIHILEGLLIAYLNIDEVIAIIREHEQPKQGLISRFN 414 Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482 LTE Q +AIL ++LR L KLEE +++ ELD L E++ + L S + EI + Sbjct: 415 LTERQAEAILEMKLRHLAKLEEIKLRGELDELSDERDTLQKTLASHSLLKELVKEEITKD 474 Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQA-MIEKEPITVVISNRGWIRSLKSHSVDLS 541 ++ F RR+ ++R D L++ ++ EPITVV+S GW+R+ K H VD Sbjct: 475 RDEFGDP-----RRSPI--ITREDSQALKEEDILPNEPITVVLSKNGWVRAAKGHDVDGK 527 Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD 601 L +K GD K A T ++L +GK Y+LP L S RG GE L LN + Sbjct: 528 ELSYKAGDEFKAQTLARTNQQVLFFDGEGKVYSLPGHALPSARGQGEP--LTGKLNPAEG 585 Query: 602 IVTAFVY--DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKV 656 ++ + + K+L+ + G FI + ++ R GK +K+S + +L+ Sbjct: 586 VLFEAIVGGEPEQKVLLATDSGYGFIAKIEDLYVKNRNGKACIKLSENSHILPPRLIPNR 645 Query: 657 TGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSY-------KDGGISDVICFKICEGL 709 VA +LLIFS++++PE+SRGKG +L S ++ I D+ + L Sbjct: 646 EQLFVACATNVGRLLIFSLEELPELSRGKGNKLISIPVAKAVSREEYIVDMQVLTTNDSL 705 Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGF 744 T + + R + DL + G+RG G+ +P+G Sbjct: 706 T-VHAGKRHFTLKGEDLTHYKGERGRRGNRLPRGL 739 >gi|283787151|ref|YP_003367016.1| topoisomerase IV subunit A [Citrobacter rodentium ICC168] gi|282950605|emb|CBG90276.1| topoisomerase IV subunit A [Citrobacter rodentium ICC168] Length = 752 Score = 505 bits (1300), Expect = e-140, Method: Compositional matrix adjust. Identities = 271/740 (36%), Positives = 444/740 (60%), Gaps = 29/740 (3%) Query: 23 RFALEE----RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78 R AL E YL Y++ I +RA+P + DG KPV RRI++AMSE+GL+ A FKKSAR Sbjct: 7 RLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSART 66 Query: 79 VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMT 137 VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S AA RYTE+R++ Sbjct: 67 VGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLS 126 Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197 + AE++L + + D+ ++ EP + P++ PN+L NGT+GIAVGMAT IP HN++ Sbjct: 127 KYAEVLLGELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLR 186 Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257 E+ +AA+ LI+ P+ ++++LLE + GPDFPT I+ R I + Y GRG R+RA W Sbjct: 187 EVAKAAITLIEKPKTTLDELLEIVQGPDFPTEAEIITPRAEIRKIYENGRGSVRMRAVWT 246 Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFP 315 E+ +V+T +P+QV ++++E+IA + K++P+++D+RDES + R+V+ P Sbjct: 247 KED-----GAVVITALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVVVP 301 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 ++ +D + +M +F +D+E + +N+N++ + P V L IL EWLA RR+ + RR Sbjct: 302 RSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEWLAFRRDTVRRR 361 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435 ++R++ + +R+ IL+GLL+A+LNIDE+I IIR ED+PKP ++SRF +TE Q +AIL L+ Sbjct: 362 LNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRTEDEPKPALMSRFGITETQAEAILELK 421 Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495 LR L KLEE +I+ E D L E++++ +L S ++ + E++ + + R Sbjct: 422 LRHLAKLEEMKIRGEQDELEKERDQLQGILASERKMNTLLKKELQADSDAYGDD-----R 476 Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555 R+ E A KA + M+ EP+T+V+S GW+RS K H +D L++K GDS K + Sbjct: 477 RSPLHEREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAQGLNYKAGDSYKSDV 535 Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615 + ++ + T G++Y + L S RG GE + + L + + KLL Sbjct: 536 KGKSNQPVVFIDTTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVEHMLMEADERKLL 595 Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--KLVVKVTGDHVAVVGENRKLLIF 673 + S G F+ ++++A R GK + + + +V+ D + + + ++L+F Sbjct: 596 MASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIDDESDMLLAITQAGRMLMF 655 Query: 674 SIDQIPEMSRGKGVRL------QSYK-DGGISDVICFKICEGLTWIDSAGRSYNRSENDL 726 + +P++S+GKG ++ ++ K + G++ + LT I R +L Sbjct: 656 PVSDLPQLSKGKGNKIINIPSAEALKGEDGLAHLYVLPPQSTLT-IHVGKRKIKLRPEEL 714 Query: 727 LGWLGKRGGVGSLVPKGFPR 746 G+RG G+L+ +G R Sbjct: 715 QKVTGERGRRGTLM-RGLQR 733 >gi|229588056|ref|YP_002870175.1| DNA topoisomerase IV subunit A [Pseudomonas fluorescens SBW25] gi|229359922|emb|CAY46776.1| topoisomerase IV subunit A [Pseudomonas fluorescens SBW25] Length = 754 Score = 505 bits (1300), Expect = e-140, Method: Compositional matrix adjust. Identities = 275/753 (36%), Positives = 448/753 (59%), Gaps = 29/753 (3%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 + V+ SL E YL Y++ I +RA+P + DG KPV RRII+AMSE+GLD + KK Sbjct: 10 DGVERRSLADFTENAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELGLDADSKHKK 69 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTE 133 SAR VG+V+GK HPHGD + Y+++V +AQPF RY L+ GQGN+G D S AA RYTE Sbjct: 70 SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPDDPKSFAAMRYTE 129 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 AR+++ +E++L + + D+ ++ EP+V P++ PN+L NGT+GIAVGMAT +P Sbjct: 130 ARLSRYSEVLLSELGQGTADWGPNFDGTLDEPLVLPARLPNILLNGTTGIAVGMATDVPP 189 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN++E+ A + L+D P+ ++E+L E+I GPD+PT I+ R +++ Y G+G R+R Sbjct: 190 HNLREVATACVRLLDEPKATVEQLCEHIQGPDYPTEAEIITPRADLLKMYETGKGSVRMR 249 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAK--RIPLLEDIRDESAED--V 309 A + +E+ I+VT +P+QV ++++E+IA L+ AK ++P + D+RDES + Sbjct: 250 AVYHIED-----GDIIVTALPHQVSGAKVLEQIAALMQAKPSKLPQVADLRDESDHENPC 304 Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369 RIV+ P N +D ++LM+ +F +++E+ + +N+N++ + PQ+ L +L EWL R Sbjct: 305 RIVIIPTNSRVDHEVLMQHLFASTELESSYRVNVNIIGLDGKPQLKNLRNLLVEWLEFRI 364 Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVD 429 + RR FR+ ++RR+ +L GLLIAYLN+DE+I IIR + PK +++RF L+E Q D Sbjct: 365 NTVRRRLQFRLDKVERRLHLLDGLLIAYLNLDEVIHIIRTAEHPKAELIARFELSEIQAD 424 Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489 IL+ RLR L +LEE +++ E D LL E+ K+ +LL S + + E+ + E + Sbjct: 425 YILDTRLRQLARLEEMKLRDEQDALLKEQAKLQALLGSEAKLKKLVRSELIKDAETYGDD 484 Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549 RR+ + + A KA + ++ E ITVV+S +GW+RS K H +D + L +K GD Sbjct: 485 -----RRSPIVQRAEA-KALTETELLPNEKITVVLSEKGWVRSAKGHDIDATGLSYKAGD 538 Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609 K A + + + + G++Y++PA L S RG GE + + + + D Sbjct: 539 GFKTAAAGRSNQFAVFIDSTGRSYSVPAHTLPSARGQGEPLTGRLTPPPGANFECVLLPD 598 Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT---GDHVAVVGE 666 ++ S G F+V+ ++ A + GK L + + K+ L V + +A V Sbjct: 599 DDALYVIASDAGYGFVVKGEDLQAKNKAGKALLSLPNNAKVILPRPVDDRESNWLASVTT 658 Query: 667 NRKLLIFSIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTWIDSAG-RS 718 +LL+F I +P++ +GKG ++ + ++ ++D+ I EG T + AG R+ Sbjct: 659 EGRLLVFKISDLPQLGKGKGNKIIGIPGERVASREEYVTDIAV--IPEGSTLVLQAGKRT 716 Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751 + +DL + G+RG G+ +P+GF R L Sbjct: 717 LSLRPDDLEHYKGERGRRGNKLPRGFQRVDALL 749 >gi|117619627|ref|YP_858203.1| DNA topoisomerase IV subunit A [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117561034|gb|ABK37982.1| DNA topoisomerase IV, A subunit [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 764 Score = 505 bits (1300), Expect = e-140, Method: Compositional matrix adjust. Identities = 274/754 (36%), Positives = 444/754 (58%), Gaps = 25/754 (3%) Query: 6 ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65 +S++ L + V+ +R E+ YL Y++ I +RA+P + DG KPV RRII+AMSE+G Sbjct: 1 MSDAIELSLDGVERQPMRTFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELG 60 Query: 66 LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124 L + KKSAR VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D Sbjct: 61 LSALSKHKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPK 120 Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184 S AA RYTEAR+++ +EL+L + + V++ ++ EPVV P++ P++L NG +GIA Sbjct: 121 SFAAMRYTEARLSRFSELLLSELGQGTVEWTPNFDGTMKEPVVLPARLPHILLNGVTGIA 180 Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244 VGMAT IP HN +E+ A + L+DNP ++ L+ ++ GPD+PT I+ R+ I + Y Sbjct: 181 VGMATDIPPHNAREVAHACVELLDNPNAGLDALMAHVQGPDYPTNAEIITPRDDIRKIYE 240 Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304 G+G + RA W E+ IV+T +P+Q ++++E+IA ++AK++P++ D+RDE Sbjct: 241 TGKGSIKQRAVWNEED-----GDIVITALPHQASGAKIMEQIAAQMVAKKLPMVTDLRDE 295 Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362 S + R+V+ P++ +D + LM +F +D+E + +N+N+L + PQV L IL Sbjct: 296 SDHENPTRLVIVPRSNRVDVEGLMAHLFATTDLEKNYRVNLNILGLDNRPQVKDLKTILT 355 Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422 EWL+ RRE + RR +R+ + R+ IL+GLLIAYLNIDE+I IIR E++P VM+ RF+ Sbjct: 356 EWLSFRRETVRRRLQYRLDKVLARLHILEGLLIAYLNIDEVIEIIRTEEEPGRVMMERFN 415 Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482 ++E Q +AIL L+LR L KLEE+++++E + L E++K++ +L S ++ + Sbjct: 416 ISEAQAEAILELKLRHLAKLEEFKLRAEQNELAEERDKLELILGSERRLSTLLK------ 469 Query: 483 KEIFSKSTDLG-RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS 541 KEI + + G RRT E + A A ++ + EP+TV++S++GW+R+ K H VD+ Sbjct: 470 KEILADAEKYGDDRRTPLVERATA-VALTEKELTPSEPVTVILSDKGWVRAAKGHDVDVE 528 Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD 601 L +K GD+ H + + + LST G+ Y+L A L S R GE + L ++ Sbjct: 529 GLSYKAGDNYLAHAHGRSNQQAVFLSTLGRTYSLEAHTLPSARSQGEPLTGRFALGAGEE 588 Query: 602 IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--- 658 + + + L+ S G F+ + ++I + GK L V + K+ Sbjct: 589 VRHLVMGNEGEPYLICSDAGYGFVCKYDDLIGKNKNGKALLTVPEGGLVMAPQKIGAPDT 648 Query: 659 DHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISD-----VICFKICEGLTWID 713 D + ++L+F ++ +P + +GKG +L S + V+ I +G + Sbjct: 649 DLCMAISNEGRMLLFPLNTLPVLGKGKGNKLISIPSARVKAREEFVVMAAVIPQGQSVTL 708 Query: 714 SAG-RSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746 AG R DL + G+RG G+ +P+G R Sbjct: 709 FAGKRKLTLKPADLDYYRGERGRRGAKLPRGLQR 742 >gi|54295818|ref|YP_128233.1| DNA topoisomerase IV subunit A [Legionella pneumophila str. Lens] gi|53755650|emb|CAH17152.1| DNA topoisomerase IV, A subunit [Legionella pneumophila str. Lens] Length = 751 Score = 504 bits (1299), Expect = e-140, Method: Compositional matrix adjust. Identities = 287/755 (38%), Positives = 442/755 (58%), Gaps = 35/755 (4%) Query: 6 ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65 I N N + E+ L E+ YL Y++ I +RA+P + DG KPV RRI++AMSE+G Sbjct: 4 IPNMNEVTEKK----PLTEFTEKAYLDYSMYVILDRALPSIADGLKPVQRRIVYAMSELG 59 Query: 66 LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124 L A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF RYP + GQGN+G+ D Sbjct: 60 LKATAKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPFVDGQGNWGSPDDPK 119 Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184 S AA RYTEAR++ A+++L + + VD+ D ++ EP + P++ PN+L NG +GIA Sbjct: 120 SFAAMRYTEARLSHYADVLLGELLQGTVDWVDNFDGTLQEPALLPARLPNILLNGATGIA 179 Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244 VGMA+ I HN+ E+ A + L+DNP+ I+ + EYI GPDFPT I+ E+I Y Sbjct: 180 VGMASDILPHNLTEVANACIHLLDNPQADIKTICEYIKGPDFPTEAEIISPSETIRAMYE 239 Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304 G G ++RA + E+ IV+T +PYQV +R++E+IA + K++P++ED+RDE Sbjct: 240 SGNGSIKMRAIYTQEKQN-----IVITALPYQVSGARVMEQIALQMQQKKLPMVEDLRDE 294 Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362 S + R+V+ P++ +D + LM +F +D+E + +N N++ + P+V L IL Sbjct: 295 SDHEHPTRLVIIPRSNRVDIESLMSHLFATTDLERSYRVNFNMIGLDGKPRVKGLLAILT 354 Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422 EWL R + RR FR++ + R+ IL+GLLIAYLNIDE+IAIIR ++PK ++SRF+ Sbjct: 355 EWLEFRLATVKRRLQFRLEKVLERIHILEGLLIAYLNIDEVIAIIREHEQPKQGLISRFN 414 Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482 LTE Q +AIL ++LR L KLEE +++ ELD L E++ + L S + EI + Sbjct: 415 LTERQAEAILEMKLRHLAKLEEIKLRGELDELSDERDTLQKTLASHFLLKELVKEEITKD 474 Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQA-MIEKEPITVVISNRGWIRSLKSHSVDLS 541 ++ F RR+ ++R D L++ ++ EPITVV+S GW+R+ K H VD Sbjct: 475 RDEFGDP-----RRSPI--ITREDSQALKEEDILPNEPITVVLSKNGWVRAAKGHDVDGK 527 Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD 601 L +K GD K A T ++L +GK Y+LP L S RG GE L LN + Sbjct: 528 ELSYKAGDEFKAQTLARTNQQVLFFDGEGKVYSLPGHVLPSARGQGEP--LTGKLNPAEG 585 Query: 602 IVTAFVY--DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKV 656 ++ + + K+L+ + G FI + ++ R GK +K+S + + +L+ Sbjct: 586 VLFEAIVGGEPEQKVLLATDSGYGFIAKIEDLYVKNRNGKACIKLSEKSHILPPRLIPNR 645 Query: 657 TGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSY-------KDGGISDVICFKICEGL 709 VA +LLIFS++++PE+SRGKG +L S ++ I D+ + L Sbjct: 646 EQLFVACATNVGRLLIFSLEELPELSRGKGNKLISIPAAKAVSREEYIVDIQVLTTNDSL 705 Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGF 744 T + + R + DL + G+RG G+ +P+G Sbjct: 706 T-VHAGKRHFTLKGEDLTHYKGERGRRGNRLPRGL 739 >gi|54298984|ref|YP_125353.1| DNA topoisomerase IV subunit A [Legionella pneumophila str. Paris] gi|53752769|emb|CAH14204.1| DNA topoisomerase IV, A subunit [Legionella pneumophila str. Paris] Length = 751 Score = 504 bits (1299), Expect = e-140, Method: Compositional matrix adjust. Identities = 288/755 (38%), Positives = 441/755 (58%), Gaps = 35/755 (4%) Query: 6 ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65 I N N + E+ L E+ YL Y++ I +RA+P + DG KPV RRI++AMSE+G Sbjct: 4 IPNMNEVTEKK----PLTEFTEKAYLDYSMYVILDRALPSIADGLKPVQRRIVYAMSELG 59 Query: 66 LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124 L A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF RYP + GQGN+G+ D Sbjct: 60 LKATAKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPFVDGQGNWGSPDDPK 119 Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184 S AA RYTEAR++ A+++L + + VD+ D ++ EP + P++ PN+L NG +GIA Sbjct: 120 SFAAMRYTEARLSLYADVLLGELLQGTVDWVDNFDGTLQEPALLPARLPNILLNGATGIA 179 Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244 VGMA+ I HN+ E+ A + L+DNP+ I+ + EYI GPDFPT I+ E+I Y Sbjct: 180 VGMASDILPHNLTEVANACIHLLDNPQADIKTICEYIKGPDFPTEAEIISPSETIRAMYE 239 Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304 G G ++RA + E+ IV+T +PYQV +R++E+IA + K++P++ED+RDE Sbjct: 240 SGNGSIKMRAIYAQEKQN-----IVITALPYQVSGARVMEQIALQMQQKKLPMVEDLRDE 294 Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362 S + R+V+ P++ +D + LM +F +D+E + +N N++ + P+V L IL Sbjct: 295 SDHEHPTRLVIIPRSNRVDIESLMSHLFATTDLERSYRVNFNMIGLDGKPRVKGLLTILT 354 Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422 EWL R + RR FR++ + R+ IL+GLLIAYLNIDE+IAIIR ++PK ++SRF+ Sbjct: 355 EWLEFRLTTVKRRLQFRLEKVLERIHILEGLLIAYLNIDEVIAIIREHEQPKQGLISRFN 414 Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482 LTE Q +AIL ++LR L KLEE +++ ELD L E++ + L S + EI + Sbjct: 415 LTERQAEAILEMKLRHLAKLEEIKLRGELDELSDERDTLQKTLASHSLLKELVKEEITKD 474 Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQA-MIEKEPITVVISNRGWIRSLKSHSVDLS 541 ++ F RR+ ++R D L++ ++ EPITVV+S GW+R+ K H VD Sbjct: 475 RDEFGDP-----RRSPI--ITREDSQALKEEDILPNEPITVVLSKNGWVRAAKGHDVDGK 527 Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD 601 L +K GD K A T ++L +GK Y+LP L S RG GE L LN + Sbjct: 528 ELSYKAGDEFKAQTLARTNQQVLFFDGEGKVYSLPGHALPSARGQGEP--LTGKLNPAEG 585 Query: 602 IVTAFVY--DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKV 656 I+ + + K+L+ + G FI + ++ R GK +K+S + +L+ Sbjct: 586 ILFEAIVGGEPEQKVLLATDSGYGFIAKIEDLYVKNRNGKACIKLSENSHILPPRLIPNR 645 Query: 657 TGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSY-------KDGGISDVICFKICEGL 709 VA +LLIFS++++PE+SRGKG +L S ++ I D+ + L Sbjct: 646 EQLFVACATNVGRLLIFSLEELPELSRGKGNKLISIPVAKAVSREEYIVDMQVLTTNDSL 705 Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGF 744 T + + R + DL + G+RG G+ +P+G Sbjct: 706 T-VHAGKRHFTLKGEDLTHYKGERGRRGNRLPRGL 739 >gi|295675918|ref|YP_003604442.1| DNA topoisomerase IV, A subunit [Burkholderia sp. CCGE1002] gi|295435761|gb|ADG14931.1| DNA topoisomerase IV, A subunit [Burkholderia sp. CCGE1002] Length = 773 Score = 504 bits (1299), Expect = e-140, Method: Compositional matrix adjust. Identities = 276/691 (39%), Positives = 416/691 (60%), Gaps = 32/691 (4%) Query: 27 EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86 E YL YA+S +K RA+PD+ DG KPV RRI AM+EMGL A KSAR+VG+V+GK Sbjct: 27 ERAYLEYAVSVVKGRALPDVCDGQKPVQRRIQFAMNEMGLSDNAKPVKSARVVGDVLGKY 86 Query: 87 HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQG 146 HPHGDQS YD+LVRLAQ F RYPLI GQGNFG+ DGD AAA RYTEAR+T +A+L+L Sbjct: 87 HPHGDQSAYDALVRLAQDFSMRYPLIDGQGNFGSRDGDGAAAMRYTEARLTPIAKLLLAE 146 Query: 147 VDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALAL 206 +D+ VDF Y+ EP V P++ P +L NG SGIAVG+AT IPSHN++E+ AA+AL Sbjct: 147 IDQGTVDFMPNYDGSFDEPKVLPARLPFVLLNGASGIAVGLATEIPSHNLREVASAAVAL 206 Query: 207 IDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSW 266 I +P++S +L++++ GPDFP GG I+ S I +Y GRG +VRARW +E++ RG W Sbjct: 207 IRHPKLSHAELMQHVPGPDFPGGGQIISSEAEIAAAYETGRGSLKVRARWKIEDLARGQW 266 Query: 267 CIVVTEIPYQVQKSRLIEKIAE-----LIIAKR-------------IPLLEDIRDESAED 308 +V+TE+P +++E+I E + + K+ + L++ +RDES +D Sbjct: 267 QLVITELPPNTAAQKVLEEIEEQTNPKIKLGKKTLTPEQLQTKQTLLGLVDAVRDESGKD 326 Query: 309 --VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366 VR+V PK+ +D + ++ + +E+ PLNM ++ P+ L IL EW+A Sbjct: 327 APVRLVFEPKSSRIDQTEFVNTLLAHTSLESNAPLNMVMVGGDGRPRQKGLSEILHEWIA 386 Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426 R + RR+ R+ +D R+ IL+G +I +LNIDE+I IIR D+PK +++ F LT+ Sbjct: 387 FRFATVTRRTRHRLSKVDDRIHILEGRMIVFLNIDEVIRIIRESDEPKVALMAAFGLTDR 446 Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486 Q + IL +RLR L +LE+ +I+ EL L EK K++ LL S Q+ +KEI Sbjct: 447 QAEDILEIRLRQLARLEKIKIEKELAELREEKAKLEELLGSEPAMKRQL------IKEIE 500 Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546 + + G R T + + +AT +A + EP+TVV+S +GW+R+LK H +D + FK Sbjct: 501 ADAKQYGDERRTLIQQEK--RATF-EARVVDEPVTVVVSQKGWVRALKGHGLDTAGFTFK 557 Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606 GD L A T D ++ ++G+ Y++ L GRG G + LI+L ++ + Sbjct: 558 AGDGLYAAFQCRTPDTLIAWGSNGRVYSVAVAQLPGGRGDGVPVTSLIELESGSHLMHYY 617 Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD--HVAVV 664 + LL+ SS G FI + ++++ + GK+F+ + + + + D VA + Sbjct: 618 AASADQALLLASSNGFGFIAKVGDMVSRVKAGKSFMTIDAGAAPLAPMPMLPDAAQVACL 677 Query: 665 GENRKLLIFSIDQIPEMS-RGKGVRLQSYKD 694 +LL+F +D++ +S G+GV L + D Sbjct: 678 SSGGRLLVFGLDEMKTLSGGGRGVTLMALDD 708 >gi|188992297|ref|YP_001904307.1| DNA topoisomerase IV subunit A [Xanthomonas campestris pv. campestris str. B100] gi|167734057|emb|CAP52263.1| Topoisomerase IV subunit A [Xanthomonas campestris pv. campestris] Length = 747 Score = 504 bits (1299), Expect = e-140, Method: Compositional matrix adjust. Identities = 274/735 (37%), Positives = 430/735 (58%), Gaps = 21/735 (2%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 + LR E YL Y++ + +RA+P L DG KPV RRII AMSE+GL+ A KKSAR V Sbjct: 15 LPLREYAERAYLDYSMYVVLDRALPFLGDGLKPVQRRIIFAMSELGLNAAAKPKKSARTV 74 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQ 138 G+VIGK HPHGD + Y++LV +AQPF RYPLI GQGNFG+ D S AA RYTE+++T Sbjct: 75 GDVIGKYHPHGDSACYEALVLMAQPFSYRYPLIEGQGNFGSTDDPKSFAAMRYTESKLTP 134 Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198 +AE++L + + D+ ++ EP P++ P+LL NGT+GIAVGMAT +P HN+ E Sbjct: 135 IAEVLLGEISQGTTDWAANFDGTLEEPTWLPARLPHLLLNGTTGIAVGMATDVPPHNLNE 194 Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258 I A L L+D+P+ ++ +L E+++GPD+PT I+ + Y G G R RA + Sbjct: 195 IVSALLHLLDDPDATVAQLCEHVLGPDYPTSAEIITPVADLRAIYETGHGSVRARATYKK 254 Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES--AEDVRIVLFPK 316 E IV+ +PYQV S++IE+IA+ + AK++P LEDIRDES VR+VL P+ Sbjct: 255 EHAN-----IVIDALPYQVSPSKVIEQIAQQMRAKKLPWLEDIRDESDHTSPVRVVLVPR 309 Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376 + +D + LM +F+ +D+E + +N+NV+ + PQV L +L EWL R + + RR Sbjct: 310 SNRVDAEQLMGHLFVTTDLERSYRVNLNVIGLDGRPQVKNLKHLLSEWLTFRSDTVTRRL 369 Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRL 436 + R+Q ++RR+ +L+GLLIA+LN+DE+I I+R+ED+PKPV+++RF+L+E Q + IL +L Sbjct: 370 NHRLQKVERRLHLLEGLLIAFLNLDEVIRIVRSEDEPKPVLIARFALSEEQAEYILETKL 429 Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496 R L +LEE +I+ E + L E+ ++ ++L S + I E+ + F + RR Sbjct: 430 RQLARLEEMKIRGEQEALAKERAQLMAILESKTKLKKLIKDELTADAKKFGDA-----RR 484 Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALH 556 + + A +A + M+ EP+TVV+S +GW+R+ K H VD + + +++GD L A+ Sbjct: 485 SPLVQRGAA-QAIDETEMVASEPMTVVLSEKGWVRAAKGHEVDPAGMSYRDGDGLLAAVR 543 Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLV 616 + +T + L +DG+AY+ L S RG+GE + ++ + ++ Sbjct: 544 SRSTYHVAFLDSDGRAYSTLVHTLPSARGNGEPLTGRFSPASGASFQVLASGENNARFVL 603 Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---DHVAVVGENRKLLIF 673 SS G F+ + + GK L +++ + +V D + V LL Sbjct: 604 ASSHGYGFVTRFENLTGRNKAGKAMLNLTTGAHVLTPAQVLNPQTDRIVAVTSAGNLLAI 663 Query: 674 SIDQIPEMSRGKG---VRLQSYKDGGISDVICFKICEGLT-WIDSAGRSYNRSENDLLGW 729 + +PE+ +GKG + + K G V + G T + S R + S DL + Sbjct: 664 TASDLPELDKGKGNKLIEIPKAKLGTERVVAVAAVAPGNTLLVRSGARVMSLSFKDLDTY 723 Query: 730 LGKRGGVGSLVPKGF 744 +G R G+L+P+G+ Sbjct: 724 VGARASRGALLPRGW 738 >gi|190149891|ref|YP_001968416.1| DNA topoisomerase 4 subunit A [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|307263215|ref|ZP_07544835.1| DNA topoisomerase 4 subunit A [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|189915022|gb|ACE61274.1| DNA topoisomerase 4 subunit A [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|306871432|gb|EFN03156.1| DNA topoisomerase 4 subunit A [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 748 Score = 504 bits (1299), Expect = e-140, Method: Compositional matrix adjust. Identities = 267/743 (35%), Positives = 448/743 (60%), Gaps = 25/743 (3%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 E V+ + ++ E+ YL Y++ I +RA+P + DG KPV RRII+AMSE+GL+ A +KK Sbjct: 8 EGVEQMPIKRFTEDAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAMSELGLNASAKYKK 67 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTE 133 SAR VG+V+GK HPHGD + Y+++V +AQPF RYPLI GQGN+G D S AA RYTE Sbjct: 68 SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLIDGQGNWGAPDDPKSFAAMRYTE 127 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 ++++++AE++L + + VD++ ++ EP P++ P++L NGT GIAVGMAT IP Sbjct: 128 SKLSKMAEVLLGELGQGTVDYQPNFDGSLEEPKYLPARLPHILLNGTMGIAVGMATDIPP 187 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E+ EA++ L++NP+ S+ +L+ + GPD+PT I+ + I + Y G+G ++R Sbjct: 188 HNINELAEASVMLLENPKASLAELMTVVQGPDYPTEAEIITPKADIAKMYEQGKGSIKMR 247 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRI 311 A W E+ IV++ +P+Q S++IE+IA + K++P+++DIRDES + +RI Sbjct: 248 AVWKKED-----GEIVISALPHQASPSKVIEQIATQMRNKKLPMVDDIRDESDHENPIRI 302 Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371 V+ P++ +D + LM+ +F +D+E + +NMN++ + P V L IL EWL RR Sbjct: 303 VIVPRSNRIDFEALMDHLFATTDLEKSYRVNMNMIGLDGKPAVKTLHTILTEWLVFRRTT 362 Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431 + RR + R+ I R+ IL+GL+IA+LNIDE I IIRNED+PK +++RF+L+E Q +AI Sbjct: 363 VTRRLNHRLDKILNRLHILEGLMIAFLNIDEAIEIIRNEDEPKTALMARFNLSEAQAEAI 422 Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491 LNLRLR L KLEE+++++E L E++++ L S ++ I EI+ ++F+ Sbjct: 423 LNLRLRHLAKLEEHELQAEKSQLEKERDELQLTLGSERRLNTLIKKEIQADAKVFASP-- 480 Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551 RR+ E + A KA + + E +TV++S +GW+R K H +D+ L ++ GD Sbjct: 481 ---RRSPLVERAEA-KAISESDLTPTEDVTVILSEKGWVRCAKGHDIDVQGLSYRAGDGY 536 Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611 + + ++ L + G+AY L +L S R GE + I L + + +S Sbjct: 537 LAHAYGRSNQPVVFLDSTGRAYALDPTSLPSARSQGEPLTGKITLPDGATVQQVLMANSD 596 Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVAVVGENR 668 K+L+ S G FI ++++ + GK + ++ K+ +L+ + + Sbjct: 597 TKVLMASDSGYGFICSFEDLVSRNKAGKAVISLTENAKVLPPQLIDNEAELSLVAMSSVG 656 Query: 669 KLLIFSIDQIPEMSRGKGVRL-----QSYKDGG--ISDVICFKICEGLTWIDSAGRSYNR 721 ++L+F I ++P++S+GKG ++ Q+ K+G ++ ++ K + L ++ S R Sbjct: 657 RMLVFPITELPQLSKGKGNKIINISAQAAKEGNELLARLLLVKPTQSLVFV-SGKRKITL 715 Query: 722 SENDLLGWLGKRGGVGSLVPKGF 744 +D+ + G+R GS + +G Sbjct: 716 KPSDIDNYRGERARKGSQLVRGL 738 >gi|114320129|ref|YP_741812.1| DNA topoisomerase IV subunit A [Alkalilimnicola ehrlichii MLHE-1] gi|114226523|gb|ABI56322.1| DNA topoisomerase IV subunit A [Alkalilimnicola ehrlichii MLHE-1] Length = 749 Score = 504 bits (1299), Expect = e-140, Method: Compositional matrix adjust. Identities = 273/738 (36%), Positives = 434/738 (58%), Gaps = 25/738 (3%) Query: 22 LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81 LR E+ YL Y++ I +RA+P++ DG KPV RRI++AMSE+GL A +KKSAR VG+ Sbjct: 15 LREFTEKAYLDYSMYVILDRALPNVGDGLKPVQRRIVYAMSELGLSNLAKYKKSARTVGD 74 Query: 82 VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQVA 140 V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G+ D S AA RYTEAR+ A Sbjct: 75 VLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGSADDPKSFAAMRYTEARLAPYA 134 Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200 +L+LQ + + VD+ ++ EP + P++ PN+L NG +GIAVGMAT IP HN++E+ Sbjct: 135 KLLLQELGQGTVDWVPNFDGTMEEPGLLPARVPNVLLNGGTGIAVGMATDIPPHNLREVV 194 Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEE 260 A + L+D PE L+ ++ PDFPT I+ +++ I Y G G R+RAR+ Sbjct: 195 SACVHLLDEPEADTVALMAHVPAPDFPTEAEIITAKDDIRRIYETGNGTLRMRARY---- 250 Query: 261 VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFPKNR 318 R + I+VT +PYQV S+++E+IA + +K++P++ED+RDES + R+V+ P++ Sbjct: 251 -ERENGDIIVTALPYQVSGSKVLEQIAGQMQSKKLPMVEDLRDESDHENPTRLVITPRSN 309 Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378 +D +ME +F +D+E + +N+NV+++ P+V+ L +L EWL R + + RR ++ Sbjct: 310 RVDIHRVMEHLFATTDLEKNYRVNLNVIALDGRPRVLGLRELLLEWLTFRTDTVRRRLNW 369 Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRS 438 R+Q + R+ IL+GLLIAYLNIDE+IAIIR ED+PKPV+++RF L+E Q +AIL L+LR Sbjct: 370 RLQKVQDRLHILEGLLIAYLNIDEVIAIIREEDEPKPVLMARFGLSERQAEAILELKLRH 429 Query: 439 LRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTT 498 L KLEE +I+ E +L E++++ ++L S ++ I E+R E + RR+ Sbjct: 430 LAKLEEMKIRGEQGDLERERDELQTILGSDERLRELIKEELRADAEQYGDE-----RRSP 484 Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAH 558 S A +A + ++ EP+TVV+S +GW+R+ K H VD L++K GD + Sbjct: 485 LVTRSAA-RALDETDLMPSEPVTVVLSEKGWVRAAKGHEVDAPGLNYKAGDQYRDHAPGR 543 Query: 559 TTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVS 618 + + + L G++Y+L A L S RG GE + + D ++ + Sbjct: 544 SNQQAVFLDHTGRSYSLTAHTLPSARGQGEPLTGRLSPAPGARFEHVLCGDPASLWVLAT 603 Query: 619 SKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD---HVAVVGENRKLLIFSI 675 G F+ S++ A R GK L V ++ T D +A V +LL+F + Sbjct: 604 DAGYGFVCALSDMYAKNRSGKALLTVPQGARVLAPTPATADEGAELAAVSSGGRLLVFPL 663 Query: 676 DQIPEMSRGKGVRLQSYKDGGI-------SDVICFKICEGLTWIDSAGRSYNRSENDLLG 728 ++P +++GKG ++ + + + +GL+ + R +DL Sbjct: 664 SELPRLAKGKGNKIIGIPAAAVKAREELLTGLAVIAPGQGLS-LTVGRRGMTLKPDDLAA 722 Query: 729 WLGKRGGVGSLVPKGFPR 746 + RG G+L+P+G R Sbjct: 723 YRAPRGRRGALLPRGLRR 740 >gi|78067167|ref|YP_369936.1| DNA topoisomerase IV subunit A [Burkholderia sp. 383] gi|77967912|gb|ABB09292.1| DNA topoisomerase IV subunit A [Burkholderia sp. 383] Length = 773 Score = 504 bits (1298), Expect = e-140, Method: Compositional matrix adjust. Identities = 282/704 (40%), Positives = 422/704 (59%), Gaps = 36/704 (5%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 + +A++L E+ YL+YA+S +K RA+PD+ DG KPV RRI+ AM+EMGL A KS Sbjct: 16 DAEALTLGNYAEQAYLSYAVSVVKSRALPDVCDGQKPVQRRILFAMNEMGLGPDAKPVKS 75 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 AR+VG+V+GK HPHGDQS YD+LVRLAQ F RYPLI GQGNFG+ DGD AAA RYTEAR Sbjct: 76 ARVVGDVLGKYHPHGDQSAYDALVRLAQDFSLRYPLIDGQGNFGSRDGDGAAAMRYTEAR 135 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 +T +A+L+L +D+ VDF Y+ EP PS+ P +L NG SGIAVG+AT IPSHN Sbjct: 136 LTPIAKLLLDEIDQGTVDFMPNYDGSFEEPKTLPSRMPFVLLNGASGIAVGLATEIPSHN 195 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 ++E+ AA+ LI NP++S +L+ I GPDFP GG I+ S I +Y GRG +VRAR Sbjct: 196 LREVAAAAVTLIRNPKLSHAELMNLIPGPDFPGGGQIISSDTEIAAAYETGRGSLKVRAR 255 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAK------------------RIPL 297 W +E++ RG W +VVTE+P +++E+I EL K + L Sbjct: 256 WKIEDLARGQWQLVVTELPPNTSGQKVLEEIEELTNPKLKLGKKTLTPEQLNTKKAMLDL 315 Query: 298 LEDIRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVM 355 L+ +RDES ++ VR+V PK+R++D + ++ + +E+ LN+ ++ P Sbjct: 316 LDAVRDESGKEAAVRLVFEPKSRTIDQTEFVNTLLAYTSLESNATLNLVMIGADGRPGQK 375 Query: 356 PLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP 415 L IL EW+ R+ + RR R+ +D R+ IL+G +I +LNIDE+I IIR D+PK Sbjct: 376 GLLTILDEWVKFRQLTMTRRCRHRLAKVDDRIHILEGRMIVFLNIDEVIRIIRESDEPKS 435 Query: 416 VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQI 475 ++S F L+E Q + IL +RLR L +LE+ +I+ EL+ L EK K++ LL N+ Sbjct: 436 ALMSAFGLSERQAEDILEIRLRQLARLEKIKIEKELEALRDEKAKLEELLA------NES 489 Query: 476 ACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKS 535 A + +KEI + + G R T + + +AT +A + EP+TVV+S +GW+R+LK Sbjct: 490 AMKRLMIKEIEADAKQYGDDRRTLIQQEK--RATF-EAKVVDEPVTVVVSQKGWVRALKG 546 Query: 536 HSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLID 595 H +D ++ FK GD L A T DR++ + G+ Y++ L GRG G + LI+ Sbjct: 547 HGLDPASFSFKAGDHLYAAFQCRTPDRLIAWGSSGRVYSVDVSVLPGGRGDGVPVTSLIE 606 Query: 596 LNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE----EKMK 651 L ++ F + +LL+ SS G F+ + ++++ + GK F+ + + M Sbjct: 607 LESGSHLMHYFAAPADQQLLLASSNGFGFLAKVGDMVSRVKAGKAFMTIDAGAVPLAPMP 666 Query: 652 LVVKVTGDHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKD 694 ++ T VA + +LL+F +D++ +S G+GV L + D Sbjct: 667 VLPNAT--QVACLSSGGRLLVFGMDEMKTLSGGGRGVILMALDD 708 >gi|218708461|ref|YP_002416082.1| DNA topoisomerase IV subunit A [Vibrio splendidus LGP32] gi|116248624|gb|ABJ90451.1| gyrase A subunit [Vibrio splendidus] gi|218321480|emb|CAV17432.1| Topoisomerase IV subunit A [Vibrio splendidus LGP32] Length = 752 Score = 504 bits (1298), Expect = e-140, Method: Compositional matrix adjust. Identities = 267/687 (38%), Positives = 434/687 (63%), Gaps = 17/687 (2%) Query: 9 SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68 SN + + V+ + +R E+ YL Y++ I +RA+P + DG KPV RRII+AMSE+GL Sbjct: 2 SNEITYDGVEQLPMRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61 Query: 69 GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAA 127 + +KKSAR VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S A Sbjct: 62 ASKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFA 121 Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187 A RYTEA++++ AE++L + + VD++ ++ EP + P++ P++L NG +GIAVGM Sbjct: 122 AMRYTEAKLSKFAEVLLGELGQGTVDWQPNFDGTMKEPQMLPARLPHILLNGITGIAVGM 181 Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247 AT IP HNV+E+ AA+ LID P+ + ++ +I GPD+PT I+ + I + YR GR Sbjct: 182 ATDIPPHNVREVANAAIHLIDTPKAELPDVMGFIQGPDYPTEAEIISPKSDIEKIYRTGR 241 Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307 G ++RA W E GS IV+T +P+QV ++L+E+IA + AK++P+++D+RDES Sbjct: 242 GSIKMRAVWHKE----GS-DIVITALPHQVSGAKLLEQIANQMRAKKLPMVDDLRDESDH 296 Query: 308 D--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365 + RIV+ P++ +D D LM +F +D+E F +N+N++ + PQV L ILKEW+ Sbjct: 297 ENPTRIVVVPRSNRIDCDQLMSHLFASTDLEKNFRVNLNMIGLDNRPQVKGLVQILKEWI 356 Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425 RR + RR +R+ + R+ IL+GLL AYLNIDE+I IIR ED+P PV++SRF+++E Sbjct: 357 EFRRTTVRRRLQYRLDKVLARLHILEGLLAAYLNIDEVIEIIRTEDEPCPVLMSRFNISE 416 Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485 Q +AIL+++LR+L KLEE++I++E + L AE+EK++ LL S ++ I EI+ + Sbjct: 417 IQANAILDIKLRNLAKLEEFKIRAEQEELEAEREKLEKLLGSERRLNTLIKKEIQADADK 476 Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545 + RR+ E + A KA ++ ++ EPITVV+S +GWIR K H VD L++ Sbjct: 477 YGDD-----RRSPLIERAEA-KALTERDLVPSEPITVVLSEKGWIRHAKGHEVDAEGLNY 530 Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605 K GD + + + + L +DG++Y+L + +L S R GE I ++++ I Sbjct: 531 KSGDKFLASAKGKSNQQAVFLGSDGRSYSLESHSLPSARSQGEPITGRLNVSPGTSIRQV 590 Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL---VVKVTGDHVA 662 + ++ LV S G F+ + S++++ + GK + + ++ L + + + + Sbjct: 591 VMGENEQLWLVGSDAGYGFVCKGSDLLSKNKSGKALVNLPQASEVMLPSPIADLDSNQIL 650 Query: 663 VVGENRKLLIFSIDQIPEMSRGKGVRL 689 + ++L+F I +P++S+GKG ++ Sbjct: 651 AITNQGRMLLFPIKDLPQLSKGKGNKI 677 >gi|284008570|emb|CBA75133.1| DNA topoisomerase IV subunit A [Arsenophonus nasoniae] Length = 751 Score = 504 bits (1298), Expect = e-140, Method: Compositional matrix adjust. Identities = 271/745 (36%), Positives = 443/745 (59%), Gaps = 23/745 (3%) Query: 12 LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71 + + V+ L E YL Y++ I +RA+P + DG KPV RRI++AMSE+GL A Sbjct: 4 ITHDGVEQQPLYTFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLSNAAK 63 Query: 72 FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYR 130 +KKSAR VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S AA R Sbjct: 64 YKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMR 123 Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190 YTE+R+++ AE +L + V + ++ +EP P++ PN+L NGT+GIAVGMAT Sbjct: 124 YTESRLSKYAETLLSELGLGTVAWTPNFDGTLTEPKTLPARLPNILLNGTTGIAVGMATD 183 Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250 IP HN +E+ A +AL++NP+ + L+++I PD+PT I+ S+E I + Y+ GRG Sbjct: 184 IPPHNAREVASALVALLENPKADLNMLMDFIPAPDYPTEAEIISSKEDIQKIYQTGRGSI 243 Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-- 308 R+RA W +++ G V+T +P+QV ++++E+IA + AK++P++ED+RDES + Sbjct: 244 RLRAVWEIDD-GHA----VITALPHQVSGAKVLEQIASQMRAKKLPMVEDLRDESDHENP 298 Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368 R+V+ P++ +D + +M +F +D+E + +N+N++ + P V L IL EWL R Sbjct: 299 TRLVIVPRSNRIDLEQVMTHLFATTDLERSYRVNLNMIGLDNRPAVKGLVEILNEWLLFR 358 Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQV 428 RE + R + R++ + +R+ IL GLLIAYLNIDE+I IIRNED+PK V+V+RF+L+E Q Sbjct: 359 RETVRNRLNHRLEKVLKRLHILDGLLIAYLNIDEVIHIIRNEDEPKAVLVARFALSETQA 418 Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488 ++IL L+LR L KLEE++++ E D+L E++++ ++L S ++ I EI + + Sbjct: 419 ESILELKLRHLAKLEEFKLRGEQDDLAKERDQLQAILGSERRLNTLIKKEIETDAQTYGD 478 Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548 RR+ E A KA + ++ EP+T+++S GW+RS K H +D + L++K G Sbjct: 479 D-----RRSPLKERIEA-KAMNEHDILPSEPVTIILSVMGWVRSAKGHDIDPTNLNYKAG 532 Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608 D A T ++ L + G++Y+L +L S RG GE + + L I Sbjct: 533 DGFCSAARGKTNQPVVFLDSTGRSYSLDPLDLPSARGQGEPLTGKLALPPGATIEHVLTA 592 Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---DHVAVVG 665 K L+ S G FI S+++A + GK + + S K+ ++V D + + Sbjct: 593 AEEQKYLLASDAGYGFICTFSDLVAKNKAGKALITLPSNAKVLAPLEVNNEQQDLLLAIT 652 Query: 666 ENRKLLIFSIDQIPEMSRGKG---VRLQSYKDGGISDVIC---FKICEGLTWIDSAGRSY 719 + ++LIF + ++P++S+GKG + + + + D++ F + + R Sbjct: 653 KAGRMLIFPVSELPQLSKGKGNKIINISAAQSASRDDLLVWLMFLQPQSSITLYFGKRKL 712 Query: 720 NRSENDLLGWLGKRGGVGSLVPKGF 744 + DL + +RG GS +P+G Sbjct: 713 KLNPEDLQKYRAERGRKGSSLPRGL 737 >gi|86148732|ref|ZP_01067007.1| DNA topoisomerase IV subunit A [Vibrio sp. MED222] gi|85833481|gb|EAQ51664.1| DNA topoisomerase IV subunit A [Vibrio sp. MED222] Length = 752 Score = 504 bits (1298), Expect = e-140, Method: Compositional matrix adjust. Identities = 267/687 (38%), Positives = 434/687 (63%), Gaps = 17/687 (2%) Query: 9 SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68 SN + + V+ + +R E+ YL Y++ I +RA+P + DG KPV RRII+AMSE+GL Sbjct: 2 SNEITYDGVEQLPMRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61 Query: 69 GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAA 127 + +KKSAR VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S A Sbjct: 62 ASKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFA 121 Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187 A RYTEA++++ AE++L + + VD++ ++ EP + P++ P++L NG +GIAVGM Sbjct: 122 AMRYTEAKLSKFAEVLLGELGQGTVDWQPNFDGTMKEPQMLPARLPHILLNGITGIAVGM 181 Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247 AT IP HNV+E+ AA+ LID P+ + ++ +I GPD+PT I+ + I + YR GR Sbjct: 182 ATDIPPHNVREVANAAIHLIDTPKAELPDVMGFIQGPDYPTEAEIISPKSDIEKIYRTGR 241 Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307 G ++RA W E GS IV+T +P+QV ++L+E+IA + AK++P+++D+RDES Sbjct: 242 GSIKMRAVWHKE----GS-DIVITALPHQVSGAKLLEQIANQMRAKKLPMVDDLRDESDH 296 Query: 308 D--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365 + RIV+ P++ +D D LM +F +D+E F +N+N++ + PQV L ILKEW+ Sbjct: 297 ENPTRIVVVPRSNRIDCDQLMSHLFASTDLEKNFRVNLNMIGLDNRPQVKGLVQILKEWI 356 Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425 RR + RR +R+ + R+ IL+GLL AYLNIDE+I IIR ED+P PV++SRF+++E Sbjct: 357 EFRRTTVRRRLQYRLDKVLARLHILEGLLAAYLNIDEVIEIIRTEDEPCPVLMSRFNISE 416 Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485 Q +AIL+++LR+L KLEE++I++E + L AE+EK++ LL S ++ I EI+ + Sbjct: 417 IQANAILDIKLRNLAKLEEFKIRAEQEELEAEREKLEKLLGSERRLNTLIKKEIQADADK 476 Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545 + RR+ E + A KA ++ ++ EPITVV+S +GWIR K H VD L++ Sbjct: 477 YGDD-----RRSPLIERAEA-KALTERDLVPSEPITVVLSEKGWIRHAKGHEVDAEGLNY 530 Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605 K GD + + + + L +DG++Y+L + +L S R GE I ++++ I Sbjct: 531 KSGDKFLASAKGKSNQQAVFLGSDGRSYSLESHSLPSARSQGEPITGRLNVSPGSSIRQV 590 Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL---VVKVTGDHVA 662 + ++ LV S G F+ + S++++ + GK + + ++ L + + + + Sbjct: 591 VMGENEQLWLVGSDAGYGFVCKGSDLLSKNKSGKALVNLPQASEVMLPSPIADLDSNQIL 650 Query: 663 VVGENRKLLIFSIDQIPEMSRGKGVRL 689 + ++L+F I +P++S+GKG ++ Sbjct: 651 AITNQGRMLLFPIKDLPQLSKGKGNKI 677 >gi|294338942|emb|CAZ87286.1| DNA topoisomerase 4 subunit A (Topoisomerase IV subunit A) [Thiomonas sp. 3As] Length = 777 Score = 504 bits (1298), Expect = e-140, Method: Compositional matrix adjust. Identities = 281/759 (37%), Positives = 432/759 (56%), Gaps = 45/759 (5%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 E++ +++L YL YA+S +K RA+PD+ DG KPV RRI++AM MGL A Sbjct: 14 EDDTDSLALGDYARRAYLDYAISVVKGRALPDVCDGLKPVQRRILYAMWRMGLTADAKPV 73 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSAR+VG+V+G+ HPHGDQ+ YD+LVRL+Q F QRYPLI GQGNFG+ DGD AAA RYTE Sbjct: 74 KSARVVGDVLGRFHPHGDQAAYDALVRLSQNFAQRYPLIDGQGNFGSRDGDGAAAMRYTE 133 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 AR++ +A L+L +D DF Y+ +EP + P++ P +L NG SGIAVGMAT IP+ Sbjct: 134 ARLSPIARLLLSEIDAGTADFIPNYDGSTTEPRLLPARLPFVLLNGASGIAVGMATEIPA 193 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN++E+ A +AL+ NP + + L + GPDF TGG ++ S + I +Y +GRG +VR Sbjct: 194 HNLREVASACVALLKNPRLELADALALMPGPDFATGGQLISSPQDIAAAYAVGRGSLKVR 253 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP----------------- 296 ARW VEE+ RG W +V+ E+P+ ++E+I EL K P Sbjct: 254 ARWTVEELARGQWQLVINELPHGTSTQMVLEEIEELSNPKIRPGKKALAPEQIALKATLL 313 Query: 297 -LLEDIRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQ 353 LL+ +RDES + VR+V P++ +D + ++ + +ET P+N+ ++ P+ Sbjct: 314 NLLDTVRDESGREAAVRLVFEPRSSRIDQAEFVNTLLARTSLETSVPINLVMIGTDGKPR 373 Query: 354 VMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP 413 L IL+EW+A+RR+ + RRS R++ +D R+ IL+G LN+DE+I IRN D P Sbjct: 374 QKGLMDILREWVAYRRDTVQRRSKHRLEQVDARIHILEGRQQVLLNLDEVIETIRNSDDP 433 Query: 414 KPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWN 473 +P +++RF LTE Q D IL++RLR L +LE +I EL E ++ LL K Sbjct: 434 RPALMARFDLTELQADDILDMRLRQLARLEAIRIDKELAAQRTEAAELQKLLADEKAMTR 493 Query: 474 QIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL 533 +I + EI + + G R T + A++ + + + E +TV++S +GW+R+ Sbjct: 494 RI------ISEIEADAKQFGDDRRTLIQ---AEQRAVAEVKVVDEAVTVIVSQKGWLRTQ 544 Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593 K H + LSAL FK GD+L + D +++L +DG+AY++ +L GRG G+ + Sbjct: 545 KGHGLVLSALTFKPGDALYATFECRSVDPLVVLGSDGRAYSIDVADLPGGRGDGQPVTSF 604 Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE--KMK 651 I+L + T LL+ +++G F+ + ++ R GKTF+ + + + Sbjct: 605 IELAPGTQALHYLAGARTTALLLWTAQGFGFVTRIGDALSRQRAGKTFMTLEDGDVPQRP 664 Query: 652 LVVKV-TGD----HVAVVGENRKLLIFSIDQIPEMSR-GKGVRL--QSYKDGGISDVICF 703 LV+ + GD +A++ +LLI++ ++ +SR G+GV L Q K+ +S Sbjct: 665 LVLGIDVGDSPTGRLALLSTGGRLLIYAAAEVKALSRGGRGVTLMEQDAKEALLSIAHLV 724 Query: 704 KICEGLTWIDSAGRSYNRSENDLLG-----WLGKRGGVG 737 E L + GR L G +LGKR G Sbjct: 725 GEREAL-LVSGKGRGGTERSTSLSGTQQALYLGKRAKRG 762 >gi|115352446|ref|YP_774285.1| DNA topoisomerase IV subunit A [Burkholderia ambifaria AMMD] gi|115282434|gb|ABI87951.1| DNA topoisomerase IV subunit A [Burkholderia ambifaria AMMD] Length = 773 Score = 504 bits (1298), Expect = e-140, Method: Compositional matrix adjust. Identities = 282/704 (40%), Positives = 421/704 (59%), Gaps = 36/704 (5%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 + A++L E+ YL+YA+S +K RA+PD+ DG KPV RRI+ AM+EMGL A KS Sbjct: 16 DADALTLGNYAEQAYLSYAVSVVKSRALPDVCDGQKPVQRRILFAMNEMGLGPDAKPVKS 75 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 AR+VG+V+GK HPHGDQS YD+LVRLAQ F RYPLI GQGNFG+ DGD AAA RYTEAR Sbjct: 76 ARVVGDVLGKYHPHGDQSAYDALVRLAQDFSLRYPLIDGQGNFGSRDGDGAAAMRYTEAR 135 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 +T +++L+L +D+ VDF Y+ EP PS+ P +L NG SGIAVG+AT IPSHN Sbjct: 136 LTPISKLLLDEIDQGTVDFMPNYDGSFEEPKTLPSRMPFVLLNGASGIAVGLATEIPSHN 195 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 ++E+ AA+ALI NP+++ +L+ I GPDFP GG I+ S I +Y GRG +VRAR Sbjct: 196 LREVAAAAVALIRNPKLTHAELMNLIPGPDFPGGGQIISSDTEIAAAYETGRGSLKVRAR 255 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAK------------------RIPL 297 W +E++ RG W +VVTE+P +++E+I EL K + L Sbjct: 256 WKIEDLARGQWQLVVTELPPSTSGQKVLEEIEELTNPKLKLGKKTLTPEQLNTKKAMLDL 315 Query: 298 LEDIRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVM 355 L+ +RDES ++ VR+V PK+R++D + ++ + +E+ LN+ ++ P Sbjct: 316 LDAVRDESGKEAAVRLVFEPKSRTIDQTEFVNTLLAYTSLESNATLNLVMIGADGRPGQK 375 Query: 356 PLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP 415 L IL EW+ R+ + RRS R+ +D R+ IL+G +I +LNIDE+I IIR D+PK Sbjct: 376 GLLTILDEWVKFRQLTMTRRSRHRLAKVDDRIHILEGRMIVFLNIDEVIRIIREADEPKA 435 Query: 416 VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQI 475 ++S F LT+ Q + IL +RLR L +LE+ +I+ EL+ L EK K++ LL N+ Sbjct: 436 ALMSAFGLTDRQAEDILEIRLRQLARLEKIKIEKELETLRDEKAKLEELLA------NES 489 Query: 476 ACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKS 535 A + +KEI + + G R T + + +AT +A + EP+TVV+S +GW+R+LK Sbjct: 490 AMKRLMIKEIETDAKQYGDDRRTLIQQEK--RATF-EAKVVDEPVTVVVSQKGWVRALKG 546 Query: 536 HSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLID 595 H +D + FK GD L A T DR++ + G+ Y++ L GRG G + LI+ Sbjct: 547 HGLDPAGFTFKAGDHLYAAFQCRTPDRLIAWGSSGRVYSVDVSVLPGGRGDGVPVTSLIE 606 Query: 596 LNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE----EKMK 651 L ++ F +LL+ SS G F+ + ++++ + GK F+ + + M Sbjct: 607 LESGSHLMHYFAAPVDQQLLLASSNGFGFLAKVGDMVSRVKAGKAFMTIDAGAVPLAPMP 666 Query: 652 LVVKVTGDHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKD 694 ++ T VA + +LL+F +D++ +S G+GV L + D Sbjct: 667 VLPNAT--QVACLSSGGRLLVFGMDEMKTLSGGGRGVILMALDD 708 >gi|317403449|gb|EFV83960.1| topoisomerase IV subunit A [Achromobacter xylosoxidans C54] Length = 773 Score = 504 bits (1298), Expect = e-140, Method: Compositional matrix adjust. Identities = 278/744 (37%), Positives = 430/744 (57%), Gaps = 41/744 (5%) Query: 19 AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78 A++L E+ YL YA+S ++ RA+PD+ DG KPV RRI+ AM MGL GA KSAR+ Sbjct: 21 AITLARYAEQAYLDYAVSVVRGRALPDVGDGQKPVQRRILFAMQAMGLAAGAKPVKSARV 80 Query: 79 VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138 VG+V+GK HPHGDQ+ YD++VR+AQ F RYPLI GQGNFG+ DGD+AAA RYTEAR+T Sbjct: 81 VGDVLGKYHPHGDQAAYDAMVRMAQDFSLRYPLIDGQGNFGSRDGDNAAAMRYTEARLTP 140 Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198 +A+L+L +DE VDF Y+ EP + P++ P +L NG SGIAVGMAT IP HN++E Sbjct: 141 IAKLLLDELDEGTVDFVPNYDGSQQEPQMLPARLPVMLLNGASGIAVGMATEIPPHNLRE 200 Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258 + +A +ALI P++ +L I GPDF GG I+ I + Y GRG +VRARW Sbjct: 201 VAQACVALIKQPQLPDAELFGMIPGPDFAGGGQIITPAADIAQIYAGGRGSLKVRARWQF 260 Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAK------------------RIPLLED 300 EE+ RG W +VVTE+P +++E+I E+ K + LL+ Sbjct: 261 EEMARGQWQLVVTELPPGTSCQKVLEEIEEITNPKVKSGKKSLTPEQTQAKAVMLNLLDA 320 Query: 301 IRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLD 358 +RDES +D VR+V PK +D D + ++ + ME+ +N+ + P+ L Sbjct: 321 VRDESGKDAAVRLVFEPKTSRVDRDEFVNTLLAQTSMESSASVNLVCIGTDGRPRQKGLR 380 Query: 359 GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV 418 IL EWLA R + RR+ FR+ + R+ +L+G ++ YLN+DE+I IR D+P+ ++ Sbjct: 381 DILAEWLAFRTNTVLRRTRFRLDKVIDRIHVLEGRMVVYLNVDEVIQTIRESDEPRAALM 440 Query: 419 SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE 478 RF+L++ Q + IL +RLR L +LE ++I+ EL++ E+ + LL+ N + Sbjct: 441 ERFNLSDRQAEDILEVRLRQLARLEGFKIEQELEDKRKEQVALQELLD------NPNTLK 494 Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV 538 +KEI + + G R T E A++A L+ +++ EP+TV++S +GW+R+ + H Sbjct: 495 RLLIKEIEADAKQYGDDRRTLIET--AERAVLETKVLD-EPVTVIVSQKGWLRARQGHGH 551 Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNH 598 D S FK+GD L A TTD ++ + +G+ Y++P L S RG G+ + +IDL Sbjct: 552 DASQFGFKQGDDLYGAFECRTTDTLIAMGDNGRVYSVPVAGLPSARGDGQPVTTMIDLES 611 Query: 599 NQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV-SSEEKMKLVVKVT 657 IV + + L+ + G F + S++ + R GK F+ + + +E ++ V Sbjct: 612 GTRIVHTIAAAADSRWLLATRGGYGFAAKLSDMTSRQRAGKQFITLEAGDELLRPVPLFE 671 Query: 658 G-DHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSA 715 G +A++ + K L+F +D++ +S G+G L DG +D + + G + +A Sbjct: 672 GATQLALLSQKGKFLVFGLDEVKSLSGGGRGTILMGL-DG--ADKLDQTVPIGALGLRAA 728 Query: 716 GRSYNRSENDLLG------WLGKR 733 G N+ D+L ++GKR Sbjct: 729 GIYRNKHTEDILAGAALAVYVGKR 752 >gi|33152625|ref|NP_873978.1| DNA topoisomerase IV subunit A [Haemophilus ducreyi 35000HP] gi|33148849|gb|AAP96367.1| topoisomerase IV subunit A [Haemophilus ducreyi 35000HP] Length = 748 Score = 504 bits (1297), Expect = e-140, Method: Compositional matrix adjust. Identities = 275/745 (36%), Positives = 446/745 (59%), Gaps = 29/745 (3%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 E V+ + ++ E+ YL Y++ I +RA+P + DG KPV RRII++MSE+GL+ A +KK Sbjct: 8 EGVEQMPIKRFTEDAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYSMSELGLNASAKYKK 67 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTE 133 SAR VG+V+GK HPHGD + Y+++V +AQPF RYPLI GQGN+G D S AA RYTE Sbjct: 68 SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLIDGQGNWGAPDDPKSFAAMRYTE 127 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 ++++++AE++L + + VD++ ++ +EP P++ P++L NGT GIAVGMAT IP Sbjct: 128 SKLSKMAEILLNELGQGTVDYQPNFDGSLAEPQYLPARLPHILLNGTMGIAVGMATDIPP 187 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ EI +A + L++NP ++ +LL I GPD+PT I+ + IV+ Y GRG ++R Sbjct: 188 HNINEIAQAGVMLLENPYTTLNELLTVIQGPDYPTEAEIITPKADIVKMYEQGRGSIKMR 247 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRI 311 A W EE IV+ +P+Q S++IE+IA + K++PL+EDIRDES + +RI Sbjct: 248 AVWKKEENE-----IVIYALPHQASPSKIIEQIATQMRNKKLPLVEDIRDESDHENPIRI 302 Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371 VL P++ +D + LM+ +F +D+E + +NMN++ + P V L IL EWL RR Sbjct: 303 VLVPRSNRIDFNGLMDHLFATTDLEKSYRVNMNMIGLDGKPAVKNLVTILTEWLHFRRTT 362 Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431 + RR S+R+ + R+ IL GL+ A+LNID++I IIR++D+PK ++ RF+LT Q DAI Sbjct: 363 VVRRLSYRLDKVLNRLHILNGLMTAFLNIDDVIEIIRHQDEPKAELIERFALTGIQADAI 422 Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491 LNLRLR L KLEE+Q+++E L E+ ++ LL S ++ N I EI++ + F Sbjct: 423 LNLRLRHLAKLEEHQLQAEQHQLEHERNELQRLLASDRRLNNLIKQEIQQDAKAF----- 477 Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551 + RR+ E + A KA + + E ITV++S +GW+R K H +D+ L ++ GD Sbjct: 478 VSPRRSPLIERAEA-KAIAESDLTPTEDITVILSEKGWVRCAKGHDIDVQGLSYRAGDGY 536 Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611 + ++ L + G+AYT+ L S R GE + I L I + + Sbjct: 537 LAHTRGRSNQPVVFLDSTGRAYTIDPTTLPSARSQGEPLTSKISLPEGASIQQVLMANPE 596 Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV---TGDHVAVVGEN- 667 K+L+ S G FI +++I+ + GK +S E K++V D +++V + Sbjct: 597 SKMLMASDAGYGFICTFNDLISRNKAGKAV--ISLPENAKILVPQWIENSDELSIVAMST 654 Query: 668 -RKLLIFSIDQIPEMSRGKGVRL-----QSYKDGG--ISDVICFKICEGLTWIDSAGRSY 719 ++L+F + ++P +++GKG ++ Q+ K+G ++ ++ K + L ++ + R Sbjct: 655 INRMLVFPLTELPTLTKGKGNKIMNIATQAAKEGKELLARLLLIKSNQSLVFM-AGKRKI 713 Query: 720 NRSENDLLGWLGKRGGVGSLVPKGF 744 D+ + G+R G+ + +G Sbjct: 714 TLKPADIDHYRGERARKGTQLVRGL 738 >gi|332535130|ref|ZP_08410940.1| topoisomerase IV subunit A [Pseudoalteromonas haloplanktis ANT/505] gi|332035448|gb|EGI71946.1| topoisomerase IV subunit A [Pseudoalteromonas haloplanktis ANT/505] Length = 764 Score = 504 bits (1297), Expect = e-140, Method: Compositional matrix adjust. Identities = 276/753 (36%), Positives = 449/753 (59%), Gaps = 23/753 (3%) Query: 6 ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65 +S+++TL+ + ++ ++ E+ YL Y++ I +RA+P + DG KPV RRII+AMSE+G Sbjct: 1 MSDTDTLLMQGIEQQTMGRFTEDAYLNYSMYVIMDRALPHVGDGLKPVQRRIIYAMSELG 60 Query: 66 LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124 L A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D Sbjct: 61 LSANAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAADDPK 120 Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184 S AA RYTEAR+++ +E++L+ + + VD+ ++ EPVV PS+ P++L NG +GIA Sbjct: 121 SFAAMRYTEARLSKFSEVLLKELGQGTVDWTPNFDGTMDEPVVLPSRLPHILLNGITGIA 180 Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244 VGMAT IP HNV+E+ A L+D P+ +E+LLE + PD+PT I+ + I + Y+ Sbjct: 181 VGMATDIPPHNVREVASACCLLLDKPKTELEELLELVHAPDYPTDAEIITPKADIHKIYK 240 Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304 GRG ++RA + EE G IV+T +P+Q +++E+IA + AK++P++ D+RDE Sbjct: 241 TGRGSIKMRAVY-TEEHGD----IVITALPHQCSGGKVLEQIAAQMNAKKLPMIADLRDE 295 Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362 S + RIV+ P++ + + LM +F +D+E + +N+N+L + PQV L IL Sbjct: 296 SDHENPTRIVIIPRSNRIKAEPLMAHLFATTDLEKNYRVNLNMLGLDGRPQVKDLRCILS 355 Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422 EWL RRE + RR +R+ + R+ IL+GLL A+LNIDE+I IIR+EDKPKPV++ RF Sbjct: 356 EWLTFRRETVRRRLQYRLDKVLARLHILEGLLAAFLNIDEVIEIIRSEDKPKPVLMERFD 415 Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482 LT+ Q +AIL L+LR L KLEE++I+ E D L E++K+ +L S ++ + EI+E Sbjct: 416 LTDTQAEAILELKLRHLAKLEEFKIRGEQDELAKERDKLAQILGSERRMSTLLKKEIQEA 475 Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542 E++ RR+ E S A KA ++ +I E +TVV+S++GW R K H +D+ Sbjct: 476 AEMYGDD-----RRSPVIERSEA-KALNEKDLIPSESVTVVLSDKGWARVGKGHDLDVQG 529 Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602 L+++ GD + + + + L + G+A+ A +L S R GE + +L + Sbjct: 530 LNYRSGDGFRASARGKSNQPAVFLDSAGRAFATDAHSLPSARSQGEPMTGRFNLTPGANF 589 Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK---VTGD 659 + + LL+ S G FI + ++++ + GK + V + ++ V D Sbjct: 590 EHVVMSEDEQVLLMASDAGYGFITDFKDLVSKNKNGKALVSVPKGGILLSPIRVNDVASD 649 Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISD-----VICFKICEGLTWIDS 714 + + ++L+F + +P++S+GKG ++ S + + + +G + Sbjct: 650 YCMAISNEGRMLLFPLRDLPKLSKGKGNKIISIPGAKVQAREEFVKVLAVVPQGSSVTLH 709 Query: 715 AG-RSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746 AG R +DL + G+RG G+ +P+G R Sbjct: 710 AGKRKLTLKPSDLEHYHGERGRRGNKLPRGLQR 742 >gi|254497413|ref|ZP_05110212.1| DNA topoisomerase IV subunit A [Legionella drancourtii LLAP12] gi|254353369|gb|EET12105.1| DNA topoisomerase IV subunit A [Legionella drancourtii LLAP12] Length = 756 Score = 504 bits (1297), Expect = e-140, Method: Compositional matrix adjust. Identities = 279/734 (38%), Positives = 441/734 (60%), Gaps = 31/734 (4%) Query: 27 EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86 E+ YL Y++ I +RA+P + DG KPV RRI++AMSE+GL A KKSAR VG+V+GK Sbjct: 20 EKAYLDYSMYVILDRALPHIADGLKPVQRRIVYAMSELGLKATAKHKKSARTVGDVLGKF 79 Query: 87 HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQVAELILQ 145 HPHGD + Y+++V +AQPF RYP + GQGN+G+ D S AA RYTEAR++ A+++L Sbjct: 80 HPHGDSACYEAMVLMAQPFSYRYPFVDGQGNWGSPDDPKSFAAMRYTEARLSAYADVLLA 139 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 + + VD+ D ++ EP + P++ PN+L NG +GIAVGMA+ I HN+ E+ A + Sbjct: 140 ELQQGTVDWVDNFDGTLQEPSLLPARLPNILLNGATGIAVGMASDILPHNLTEVANACVH 199 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265 L+DNP+ + ++++I GPDFPT I+ E+I Y G G ++RA + E+ Sbjct: 200 LLDNPQADLSAIMQHIKGPDFPTAAEIITPPEAITTLYATGHGSIKMRAIYNPEK----- 254 Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFPKNRSLDPD 323 IV+T +PYQV ++++E+IA + K++P++ED+RDES + R+V+ P++ +D D Sbjct: 255 QNIVITALPYQVSGAKVMEQIALQMQQKKLPMVEDLRDESDHEHPTRLVIIPRSNRVDVD 314 Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383 LM +F +D+E + +N N++ + P+V L IL EWL +R V+ RR +R+ + Sbjct: 315 GLMSHLFATTDLERSYRVNFNMIGLDGKPRVKNLITILSEWLIYRVSVVKRRLEYRLAKV 374 Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLE 443 R+ +L+GLLIAYLNIDE+IAIIR + PK +++RF+L+E Q +AIL ++LR L KLE Sbjct: 375 LERIHVLEGLLIAYLNIDEVIAIIREHEHPKQGLIARFNLSERQAEAILEMKLRHLAKLE 434 Query: 444 EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVS 503 E +I+ ELD L E++ + S+L S ++ N + EI + ++ F G R + V Sbjct: 435 EIKIRGELDELSIERDHLQSILTSEQKLKNLVKDEIIKDRDAF------GDVRRSPIIVR 488 Query: 504 RADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRI 563 + +A ++ ++ EPITVV+S GW+R+ K H ++ S L +K GD K A + +I Sbjct: 489 QESQALKEEDILPNEPITVVLSKNGWVRAAKGHDINGSELSYKAGDEFKAQATARSNQQI 548 Query: 564 LLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVV--SSKG 621 + ++GK Y+LP +L S RG GE L LN + I+ V + LV+ S G Sbjct: 549 VFFDSEGKVYSLPGHSLPSARGQGEP--LTGKLNPAEGILFETVVGGEAEQLVLLASDAG 606 Query: 622 NAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH----VAVVGENRKLLIFSIDQ 677 F+ + S++ R GK +K+ + ++ L ++ + VA +LLIFSI + Sbjct: 607 YGFVAKMSDLYVKNRNGKACVKLPAASRI-LPPRILPNQEELLVACATSVGRLLIFSIKE 665 Query: 678 IPEMSRGKGVRLQSY-------KDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWL 730 +PE+SRGKG +L S ++ + DV + LT + + R + DL + Sbjct: 666 LPELSRGKGNKLISIPATKTASREEYVIDVQVLSNQDVLT-VHAGKRHFTLKGADLEHYK 724 Query: 731 GKRGGVGSLVPKGF 744 G+RG G+ +P+G Sbjct: 725 GERGRRGNRLPRGL 738 >gi|84394565|ref|ZP_00993270.1| DNA topoisomerase IV subunit A [Vibrio splendidus 12B01] gi|84374815|gb|EAP91757.1| DNA topoisomerase IV subunit A [Vibrio splendidus 12B01] Length = 752 Score = 503 bits (1296), Expect = e-140, Method: Compositional matrix adjust. Identities = 266/687 (38%), Positives = 434/687 (63%), Gaps = 17/687 (2%) Query: 9 SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68 SN + + V+ + +R E+ YL Y++ I +RA+P + DG KPV RRII+AMSE+GL Sbjct: 2 SNEITYDGVEQLPMRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61 Query: 69 GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAA 127 + +KKSAR VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S A Sbjct: 62 ASKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFA 121 Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187 A RYTEA++++ AE++L + + VD++ ++ EP + P++ P++L NG +GIAVGM Sbjct: 122 AMRYTEAKLSKFAEVLLGELGQGTVDWQPNFDGTMKEPQMLPARLPHILLNGITGIAVGM 181 Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247 AT IP HNV+E+ AA+ LID P+ + ++ +I GPD+PT I+ + I + YR GR Sbjct: 182 ATDIPPHNVREVANAAIHLIDTPKAELPDVMGFIQGPDYPTEAEIISPKSDIEKIYRTGR 241 Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307 G ++RA W E GS IV+T +P+QV ++L+E+IA + AK++P+++D+RDES Sbjct: 242 GSIKMRAVWHKE----GS-DIVITSLPHQVSGAKLLEQIANQMRAKKLPMVDDLRDESDH 296 Query: 308 D--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365 + RIV+ P++ +D D LM +F +D+E F +N+N++ + PQV L ILKEW+ Sbjct: 297 ENPTRIVVVPRSNRIDCDQLMSHLFASTDLEKNFRVNLNMIGLDNRPQVKGLVQILKEWI 356 Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425 RR + RR +R+ + R+ IL+GLL AYLNIDE+I IIR ED+P PV+++RF+++E Sbjct: 357 EFRRTTVRRRLQYRLDKVLARLHILEGLLAAYLNIDEVIEIIRTEDEPCPVLMNRFNISE 416 Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485 Q +AIL+++LR+L KLEE++I++E + L AE+EK++ LL S ++ I EI+ + Sbjct: 417 IQANAILDIKLRNLAKLEEFKIRAEQEELEAEREKLEKLLGSERRLNTLIKKEIQADADK 476 Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545 + RR+ E + A KA ++ ++ EPITVV+S +GWIR K H VD L++ Sbjct: 477 YGDD-----RRSPLIERAEA-KALTERDLVPSEPITVVLSEKGWIRHAKGHEVDAEGLNY 530 Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605 K GD + + + + L +DG++Y+L + +L S R GE I ++++ I Sbjct: 531 KSGDKFLASTKGKSNQQAVFLGSDGRSYSLESHSLPSARSQGEPITGRLNVSPGTSIRQV 590 Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL---VVKVTGDHVA 662 + ++ LV S G F+ + S++++ + GK + + ++ L + + + + Sbjct: 591 VMGENEQLWLVGSDAGYGFVCKGSDLLSKNKSGKALVNLPQASEVMLPSPIADLDSNQIL 650 Query: 663 VVGENRKLLIFSIDQIPEMSRGKGVRL 689 + ++L+F I +P++S+GKG ++ Sbjct: 651 AITNQGRMLLFPIKDLPQLSKGKGNKI 677 >gi|261492516|ref|ZP_05989069.1| DNA topoisomerase IV subunit A [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261311675|gb|EEY12825.1| DNA topoisomerase IV subunit A [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 748 Score = 503 bits (1296), Expect = e-140, Method: Compositional matrix adjust. Identities = 265/743 (35%), Positives = 446/743 (60%), Gaps = 25/743 (3%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 E ++ + ++ E+ YL Y++ I +RA+P + DG KPV RRII+AMSE+GL+ A +KK Sbjct: 8 EGIEQMPIKRFTEDAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAMSELGLNASAKYKK 67 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTE 133 SAR VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S AA RYTE Sbjct: 68 SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 127 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 ++++++AE++L + + VD++ ++ EP P++ P++L NGT GIAVGMAT IP Sbjct: 128 SKLSKIAEILLGELGQGTVDYQPNFDGSLEEPKYLPARLPHILLNGTMGIAVGMATDIPP 187 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E+ +A++ L+DNP+ +++ +L + GPD+PT I+ + I Y GRG ++R Sbjct: 188 HNINELADASVMLLDNPKATLDDVLSVVQGPDYPTEAEIITPKAEIARMYEQGRGSIKMR 247 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRI 311 A W EE IV++ +P+Q S++IE++A + K++P+++DIRDES + +RI Sbjct: 248 AVWKKEE-----GEIVISALPHQASPSKIIEQVATQMRNKKLPMVDDIRDESDHENPIRI 302 Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371 V+ P++ +D D LM+ +F +D+E + +NMN++ + P V L IL EWL+ RR Sbjct: 303 VIVPRSNRIDFDALMDHLFATTDLEKSYRVNMNMIGLDGKPAVKNLLTILNEWLSFRRTT 362 Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431 + RR ++R+ I R+ IL GL+IA+LNIDE+I IIRNED+PK +++RF+LT+ Q +AI Sbjct: 363 VTRRLNYRLDKILNRLHILDGLMIAFLNIDEVIEIIRNEDEPKAELMARFNLTDVQAEAI 422 Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491 LNLRLR L KLEE+Q+++E L E++++ +L S ++ + I EI+ + F+ Sbjct: 423 LNLRLRHLAKLEEHQLQAEKSELEKERDELQLILGSERRLNSLIKKEIQADAKAFASP-- 480 Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551 RR+ E + + KA + + E +TV++S +GW+R K H +D+ AL ++ GD Sbjct: 481 ---RRSPLVERAES-KAIAESDLTPTEDVTVILSEKGWVRCAKGHDIDVQALSYRAGDDY 536 Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611 + ++ L + G+AY L +L S R GE + I L + + +S Sbjct: 537 LAHARGRSNQPVVFLDSTGRAYALDPTSLPSARSQGEPLTGKITLPEGATVQQVLMANSE 596 Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVAVVGENR 668 K+L+ S G FI ++++ + GK + ++ K+ +L+ + + Sbjct: 597 TKVLMASDSGYGFICTFEDLVSRNKAGKAVISLTENAKVLPPQLLENDENLSLVAMSNVG 656 Query: 669 KLLIFSIDQIPEMSRGKGVRL-----QSYKDGG--ISDVICFKICEGLTWIDSAGRSYNR 721 ++L+F + ++P +S+GKG ++ + K G ++ ++ K L ++ S R Sbjct: 657 RMLVFPVSELPALSKGKGNKIINISAAAAKSGDEYLARLLVIKPTNSLVFV-SGKRKITL 715 Query: 722 SENDLLGWLGKRGGVGSLVPKGF 744 +D+ + G+R GS + +G Sbjct: 716 KPSDIDNYRGERARKGSQLVRGL 738 >gi|260775391|ref|ZP_05884288.1| topoisomerase IV subunit A [Vibrio coralliilyticus ATCC BAA-450] gi|260608572|gb|EEX34737.1| topoisomerase IV subunit A [Vibrio coralliilyticus ATCC BAA-450] Length = 756 Score = 503 bits (1296), Expect = e-140, Method: Compositional matrix adjust. Identities = 277/750 (36%), Positives = 449/750 (59%), Gaps = 23/750 (3%) Query: 9 SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68 S + + V+ + +R E+ YL Y++ I +RA+P + DG KPV RRII+AMSE+GL Sbjct: 2 STEITYDGVEQLPMRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61 Query: 69 GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAA 127 A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S A Sbjct: 62 AAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFA 121 Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187 A RYTEA++++ AE++L + + V+++ ++ EP + P++ P++L NG +GIAVGM Sbjct: 122 AMRYTEAKLSKFAEVLLGELGQGTVEWQPNFDGTMKEPQMLPARLPHILLNGVTGIAVGM 181 Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247 AT IP HNV+EI +A + LIDNP+ + ++ ++ GPD+PT I+ + + + YR GR Sbjct: 182 ATDIPPHNVREIADATIHLIDNPKSELADVMNFVQGPDYPTEAEIISPKAELEKIYRTGR 241 Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307 G ++RA W E IV+T +P+QV ++L+E+IA + AK++P+++D+RDES Sbjct: 242 GSIKMRAVWHKE-----GGDIVITALPHQVSGAKLLEQIASQMRAKKLPMVDDLRDESDH 296 Query: 308 D--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365 + RIV+ P++ +D D LM +F +D+E F +N+N++ + PQV L IL EW+ Sbjct: 297 ENPTRIVVVPRSNRIDCDQLMNHLFASTDLEKNFRVNLNMIGLDNRPQVKGLVQILSEWI 356 Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425 RR + RR R+ + R+ IL+GLL+AYLN+DE+I IIR ED PK V+++RF +T+ Sbjct: 357 EFRRATVRRRLQHRLDKVLARLHILEGLLVAYLNLDEVIEIIRTEDDPKAVLMARFGITD 416 Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485 Q DAIL+ +LR L KLEE +I+ E + L E+EK++ LL S ++ + EI+ E Sbjct: 417 IQADAILDTKLRHLAKLEEMKIRGEQEELEKEREKLEQLLGSERRLNTLLKKEIKADAEK 476 Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545 + RR+ E + A KA ++ ++ EPITVV+S++GWIR K H VD L++ Sbjct: 477 YGDD-----RRSPLVERAEA-KALTERDLVPSEPITVVLSDKGWIRHAKGHDVDAEGLNY 530 Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605 K GD + + + L +DG++Y+L + +L S R GE I +++N +I Sbjct: 531 KSGDKYLAHARGKSNQQAVFLGSDGRSYSLESHSLPSARSQGEPITGRLNINAGTNIRHV 590 Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVA 662 + + LV S G F+ + S++++ R GK + + ++ + + D + Sbjct: 591 VMGEEDQLWLVGSDAGYGFVCKGSDLLSKNRSGKALVTLPQNSEVMTPDTISNLDNDEIL 650 Query: 663 VVGENRKLLIFSIDQIPEMSRGKG---VRLQSYKDGGISDVIC--FKICEGLTWIDSAG- 716 + ++L+F I +P++ +GKG + + + K +++ + +G + AG Sbjct: 651 AITNQGRMLLFPIKDLPQLGKGKGNKIINIPAAKAKEREEMVSHLMSLPQGASVTLYAGK 710 Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746 R DL + G+RG GSL+P+G R Sbjct: 711 RKLGLKPADLDNFRGERGRRGSLLPRGLQR 740 >gi|331007253|ref|ZP_08330459.1| Topoisomerase IV subunit A [gamma proteobacterium IMCC1989] gi|330418941|gb|EGG93401.1| Topoisomerase IV subunit A [gamma proteobacterium IMCC1989] Length = 749 Score = 503 bits (1296), Expect = e-140, Method: Compositional matrix adjust. Identities = 275/743 (37%), Positives = 437/743 (58%), Gaps = 25/743 (3%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 E+ + +SL+ E+ YL Y++ I +RA+P++ DG KPV RRI++AMSE+GL A FKK Sbjct: 9 ESDETISLKDYAEKAYLDYSMYVILDRALPNIGDGLKPVQRRIVYAMSELGLKATAKFKK 68 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTE 133 SAR VG+VIGK HPHGD + Y+++V +AQPF RYPL+ GQGN+G+ D S AA RYTE Sbjct: 69 SARTVGDVIGKFHPHGDSAAYEAMVLMAQPFSYRYPLVDGQGNWGSPDDPKSFAAMRYTE 128 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 +R+T +E++L + + V++ ++ EP V P++ PN+L NGT+GIAVGMAT IP Sbjct: 129 SRLTAYSEVLLSELGQGTVEWAPNFDGTIDEPKVLPAQVPNILLNGTTGIAVGMATDIPP 188 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN++E+ A + L+ NP+ ++ +L+E+++ PD PT I+ S + I Y GRG R+R Sbjct: 189 HNLREVVSACIHLLSNPKATVTELMEFVLAPDMPTDAEIITSPKDIQTMYETGRGSLRMR 248 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRI 311 W G+ IVVT +P+QV ++++E+IA + AK++P++ D+RDES + R+ Sbjct: 249 CIW-----GQEDGDIVVTSLPHQVSGAKILEQIAAQMQAKKLPMVADLRDESDHENPTRL 303 Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371 V+ P++ +D + LM +F +D+E + +NMN++ + +P V PL+ IL EWL+ R Sbjct: 304 VIIPRSNRIDVEQLMSHLFASTDLERTYRINMNMIGIDGLPAVKPLNVILTEWLSFRMVT 363 Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431 + RR +R+ + +R+ IL+G L A+LNIDE+I IIR EDKPK V++ RF +T+ Q +AI Sbjct: 364 VRRRLQYRLDKVLKRLHILEGYLAAFLNIDEVIHIIRTEDKPKQVLMDRFGVTDIQAEAI 423 Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491 L L+LR + KLEE +I+ E D L E E ++ +L S + N + E++ + E + Sbjct: 424 LELKLRQIAKLEEIKIRGEQDELAKEGEWLEGILASATKLKNLVKKELQAIAEKY----- 478 Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551 G R + V +A + ++ +PITVV+S +GWIRS K H VD +AL +K GD+ Sbjct: 479 -GNDRRSPIVVRGEAQALSEMDLLTSDPITVVLSEKGWIRSAKGHDVDPAALSYKAGDAY 537 Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611 + T LL+ + G++Y L + L S RG GE ++ + Sbjct: 538 MFSAKGKTNQNALLIDSTGRSYALASHTLPSSRGQGEPASGRLNPPSGAVFTGLLMGVEK 597 Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK---LVVKVTGDHVAVVGENR 668 ++L+ S G F+ E + + GK L + ++ ++ V +VA Sbjct: 598 QRVLIASDAGYGFVTELGNLYTKNKAGKALLTLPKGARVLPPFMIDDVADAYVAAASNEG 657 Query: 669 KLLIFSIDQIPEMSRGKGVRLQSY-------KDGGISDVICFKICEGLTWIDSAGRSYNR 721 +LLIF + +PE++RGKG ++ S ++ + + + LT + S R Sbjct: 658 RLLIFPLSDLPELARGKGNKMLSIPGARVEAREEFVVSIAVIHSKQKLT-VYSGKRHTTF 716 Query: 722 SENDLLGWLGKRGGVGSLVPKGF 744 DL + G+RG G +P+GF Sbjct: 717 KMADLEHYKGERGRRGHKLPRGF 739 >gi|149913518|ref|ZP_01902051.1| DNA topoisomerase IV, A subunit [Roseobacter sp. AzwK-3b] gi|149812638|gb|EDM72467.1| DNA topoisomerase IV, A subunit [Roseobacter sp. AzwK-3b] Length = 814 Score = 503 bits (1295), Expect = e-140, Method: Compositional matrix adjust. Identities = 239/410 (58%), Positives = 311/410 (75%) Query: 19 AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78 A LR A+ ERYL YALSTI RA+PD RDG KPVHRRI++AM E+ L F+KSA+I Sbjct: 16 AEPLRRAIGERYLTYALSTIMHRALPDARDGLKPVHRRILYAMRELRLSSTGGFRKSAKI 75 Query: 79 VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138 G+V+G HPHGD ++YD++ RLAQ F RYPL+ GQGNFGNIDGD+ AA RYTEARMT Sbjct: 76 SGDVMGNYHPHGDAAIYDAMARLAQDFAVRYPLVDGQGNFGNIDGDNPAASRYTEARMTA 135 Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198 VAE +L G++E+AVD+RD Y+ EP+V P+ FPNLLANG+SGIAVGMAT+IP HN+ E Sbjct: 136 VAEALLDGLNENAVDYRDNYDGTLREPIVLPASFPNLLANGSSGIAVGMATNIPPHNISE 195 Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258 + +A L LI P+ + LL YI GPDFPTGG+IVE RE+I ++YR GRG FR+R +W V Sbjct: 196 LVDACLHLIKVPDARDDTLLNYIPGPDFPTGGVIVEPRENIAQAYRTGRGAFRLRCKWEV 255 Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318 E++GRG W IVVTEIPYQVQKS+L+EK+AE+I K++P+L DIRDESA+DVR+VL P+++ Sbjct: 256 EDLGRGQWQIVVTEIPYQVQKSKLVEKLAEVIQTKKVPILADIRDESADDVRMVLEPRSK 315 Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378 ++DP++LM ++ SD+E RF LNMNVL G P+V L +L+ +L RREVL RRS Sbjct: 316 NVDPEVLMGMLYRNSDLEVRFSLNMNVLIDGVTPKVCSLKEVLRAFLDFRREVLERRSRH 375 Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQV 428 RM ID R+E+L+GL+ A+LN+D +I IIR +D PK ++ T +Q Sbjct: 376 RMAKIDNRLEVLQGLITAFLNLDRVIEIIRYDDDPKVALMYEDWSTPHQA 425 Score = 327 bits (837), Expect = 6e-87, Method: Compositional matrix adjust. Identities = 162/334 (48%), Positives = 223/334 (66%), Gaps = 10/334 (2%) Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482 L++ Q +AILN+RLRSLR+LEE + E D L+ E+ ++ LL QW+ I+ ++R+V Sbjct: 484 LSDVQAEAILNMRLRSLRRLEEDALVRERDTLMEERAGLEDLLEDETLQWDAISEQLRQV 543 Query: 483 KEIFSK-----STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHS 537 K+ F + ++G RRT F E ++ L+ AMI++EPITVV S GWIR++ H Sbjct: 544 KKTFGRDYVLDGKNVGVRRTQFAEAGEVEEVPLE-AMIDREPITVVCSKMGWIRAMSGH- 601 Query: 538 VDLS-ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDL 596 +DLS L FK+GD + HA TTDR+L+ T+G+ YTL A NL GRG GE ++L++DL Sbjct: 602 IDLSRELKFKDGDEGRFVFHAETTDRLLVFGTNGRFYTLSAANLPGGRGMGEPLRLMVDL 661 Query: 597 NHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV 656 + +IV F++ KLLV SS G+ F+V E E++A TR GK L V + + K+ KV Sbjct: 662 PNEAEIVDLFIHRPGAKLLVASSAGDGFVVPEDEVVAQTRSGKQVLNVRDDVRAKVCTKV 721 Query: 657 TGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAG 716 GDHVA VGENRK+LIF++D++PEM RGKGVRLQ YKDGG+SD F + +GL+W D AG Sbjct: 722 EGDHVACVGENRKVLIFALDELPEMGRGKGVRLQKYKDGGLSDATTFALADGLSWHDPAG 781 Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750 R+ RSE DL W GKR G + P+GFPR +F Sbjct: 782 RT--RSETDLAEWTGKRASAGRMAPRGFPRDNRF 813 >gi|170733716|ref|YP_001765663.1| DNA topoisomerase IV subunit A [Burkholderia cenocepacia MC0-3] gi|254247560|ref|ZP_04940881.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit [Burkholderia cenocepacia PC184] gi|124872336|gb|EAY64052.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit [Burkholderia cenocepacia PC184] gi|169816958|gb|ACA91541.1| DNA topoisomerase IV, A subunit [Burkholderia cenocepacia MC0-3] Length = 773 Score = 503 bits (1295), Expect = e-140, Method: Compositional matrix adjust. Identities = 281/701 (40%), Positives = 421/701 (60%), Gaps = 36/701 (5%) Query: 19 AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78 A++L E+ YL+YA+S +K RA+PD+ DG KPV RRI+ AM+EMGL A KSAR+ Sbjct: 19 ALTLGNYAEQAYLSYAVSVVKSRALPDVCDGQKPVQRRILFAMNEMGLGPDAKPVKSARV 78 Query: 79 VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138 VG+V+GK HPHGDQS YD+LVRLAQ F RYPLI GQGNFG+ DGD AAA RYTEAR+T Sbjct: 79 VGDVLGKYHPHGDQSAYDALVRLAQDFSLRYPLIDGQGNFGSRDGDGAAAMRYTEARLTP 138 Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198 +A+L+L +D+ VDF Y+ EP PS+ P +L NG SGIAVG+AT IPSHN++E Sbjct: 139 IAKLLLDEIDQGTVDFMPNYDGSFEEPKTLPSRMPFVLLNGASGIAVGLATEIPSHNLRE 198 Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258 + AA+ALI NP+++ +L+ I GPDFP GG I+ S I +Y GRG +VRA+W + Sbjct: 199 VAAAAVALIRNPKLTHAELMNLIPGPDFPGGGQIISSDTEIAAAYETGRGSLKVRAKWKI 258 Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAK------------------RIPLLED 300 E++ RG W +VVTE+P +++E+I EL K + LL+ Sbjct: 259 EDLARGQWQLVVTELPPSTSGQKVLEEIEELTNPKLKLGKKTLTPEQLNTKKAMLDLLDA 318 Query: 301 IRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLD 358 +RDES ++ VR+V PK+R++D + ++ + +E+ LN+ ++ P L Sbjct: 319 VRDESGKEAAVRLVFEPKSRTIDQTEFVNTLLAYTSLESNATLNLVMIGADGRPGQKGLL 378 Query: 359 GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV 418 IL EW+ R+ + RR R+ +D R+ IL+G +I +LNIDE+I IIR D+PK ++ Sbjct: 379 TILDEWVKFRQLTMTRRCRHRLAKVDDRIHILEGRMIVFLNIDEVIRIIRESDEPKAALM 438 Query: 419 SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE 478 S F L+E Q + IL +RLR L +LE+ +I+ ELD L EK K++ LL N+ A + Sbjct: 439 SAFGLSERQAEDILEIRLRQLARLEKIKIEKELDALRDEKAKLEELLA------NESAMK 492 Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV 538 +KEI + + G R T + + +AT +A + EP+TVV+S +GW+R+LK H + Sbjct: 493 RLMIKEIEADAKQYGDDRRTLIQQEK--RATF-EAKVVDEPVTVVVSQKGWVRALKGHGL 549 Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNH 598 D + FK GD L A T DR++ + G+ Y++ L GRG G + LI+L Sbjct: 550 DPAGFTFKAGDHLYAAFQCRTPDRLIAWGSSGRVYSVDVSVLPGGRGDGVPVTSLIELES 609 Query: 599 NQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE----EKMKLVV 654 ++ + + +LL+ SS G F+ + ++++ + GK+F+ + + M ++ Sbjct: 610 GSHLMHYYAAPADQQLLLASSNGFGFLAKVGDMVSRLKAGKSFMTIDAGAVPLAPMPVLP 669 Query: 655 KVTGDHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKD 694 T VA + +LL+F +D++ +S G+GV L + D Sbjct: 670 NAT--QVACLSSGGRLLVFGMDEMKTLSGGGRGVILMALDD 708 >gi|107023296|ref|YP_621623.1| DNA topoisomerase IV subunit A [Burkholderia cenocepacia AU 1054] gi|116690379|ref|YP_836002.1| DNA topoisomerase IV subunit A [Burkholderia cenocepacia HI2424] gi|105893485|gb|ABF76650.1| DNA topoisomerase IV subunit A [Burkholderia cenocepacia AU 1054] gi|116648468|gb|ABK09109.1| DNA topoisomerase IV subunit A [Burkholderia cenocepacia HI2424] Length = 773 Score = 503 bits (1295), Expect = e-140, Method: Compositional matrix adjust. Identities = 281/701 (40%), Positives = 421/701 (60%), Gaps = 36/701 (5%) Query: 19 AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78 A++L E+ YL+YA+S +K RA+PD+ DG KPV RRI+ AM+EMGL A KSAR+ Sbjct: 19 ALTLGNYAEQAYLSYAVSVVKSRALPDVCDGQKPVQRRILFAMNEMGLGPDAKPVKSARV 78 Query: 79 VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138 VG+V+GK HPHGDQS YD+LVRLAQ F RYPLI GQGNFG+ DGD AAA RYTEAR+T Sbjct: 79 VGDVLGKYHPHGDQSAYDALVRLAQDFSLRYPLIDGQGNFGSRDGDGAAAMRYTEARLTP 138 Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198 +A+L+L +D+ VDF Y+ EP PS+ P +L NG SGIAVG+AT IPSHN++E Sbjct: 139 IAKLLLDEIDQGTVDFMPNYDGSFEEPKTLPSRMPFVLLNGASGIAVGLATEIPSHNLRE 198 Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258 + AA+ALI NP+++ +L+ I GPDFP GG I+ S I +Y GRG +VRA+W + Sbjct: 199 VAAAAVALIRNPKLTHAELMNLIPGPDFPGGGQIISSDTEIAAAYETGRGSLKVRAKWKI 258 Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAK------------------RIPLLED 300 E++ RG W +VVTE+P +++E+I EL K + LL+ Sbjct: 259 EDLARGQWQLVVTELPPSTSGQKVLEEIEELTNPKLKLGKKTLTPEQLNTKKAMLDLLDA 318 Query: 301 IRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLD 358 +RDES ++ VR+V PK+R++D + ++ + +E+ LN+ ++ P L Sbjct: 319 VRDESGKEAAVRLVFEPKSRTIDQTEFVNTLLAYTSLESNATLNLVMIGADGRPGQKGLL 378 Query: 359 GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV 418 IL EW+ R+ + RR R+ +D R+ IL+G +I +LNIDE+I IIR D+PK ++ Sbjct: 379 TILDEWVKFRQLTMTRRCRHRLAKVDDRIHILEGRMIVFLNIDEVIRIIRESDEPKAALM 438 Query: 419 SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE 478 S F L+E Q + IL +RLR L +LE+ +I+ ELD L EK K++ LL N+ A + Sbjct: 439 SAFGLSERQAEDILEIRLRQLARLEKIKIEKELDALRDEKAKLEELLA------NESAMK 492 Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV 538 +KEI + + G R T + + +AT +A + EP+TVV+S +GW+R+LK H + Sbjct: 493 RLMIKEIEADAKQYGDDRRTLIQQEK--RATF-EAKVVDEPVTVVVSQKGWVRALKGHGL 549 Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNH 598 D + FK GD L A T DR++ + G+ Y++ L GRG G + LI+L Sbjct: 550 DPAGFTFKAGDHLYAAFQCRTPDRLIAWGSSGRVYSVDVSVLPGGRGDGVPVTSLIELES 609 Query: 599 NQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE----EKMKLVV 654 ++ + + +LL+ SS G F+ + ++++ + GK+F+ + + M ++ Sbjct: 610 GSHLMHYYAAPADQQLLLASSNGFGFLAKVGDMVSRLKAGKSFMTIDAGAVPLAPMPVLP 669 Query: 655 KVTGDHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKD 694 T VA + +LL+F +D++ +S G+GV L + D Sbjct: 670 NAT--QVACLSSGGRLLVFGMDEMKTLSGGGRGVILMALDD 708 >gi|121604108|ref|YP_981437.1| DNA topoisomerase IV subunit A [Polaromonas naphthalenivorans CJ2] gi|120593077|gb|ABM36516.1| DNA topoisomerase IV subunit A [Polaromonas naphthalenivorans CJ2] Length = 784 Score = 503 bits (1295), Expect = e-140, Method: Compositional matrix adjust. Identities = 271/712 (38%), Positives = 408/712 (57%), Gaps = 47/712 (6%) Query: 21 SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG-------AAFK 73 SL + YL YALS +K RA+PD+ DG KPV RRI+++M+ MGL FG A Sbjct: 20 SLAAYAQRAYLEYALSVVKGRALPDVCDGQKPVQRRILYSMARMGLAFGGPNGATGARPV 79 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 K AR+VG+V+G+ HPHGDQ+ YD+LVR+AQ F QRYPLI GQGNFG+ DGD AAA RYTE Sbjct: 80 KCARVVGDVLGRFHPHGDQAAYDALVRMAQDFSQRYPLIDGQGNFGSRDGDGAAAMRYTE 139 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 AR+ ++ L++ +DE VDF Y+ EP P++ P L NG SGIAVG+AT IPS Sbjct: 140 ARLARITTLLMDEIDEGTVDFIPNYDGSTEEPRQLPARLPFTLLNGASGIAVGLATEIPS 199 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN++E+ +A +ALI P++S E+L I GPD+P GG I+ S I +YR GRG +VR Sbjct: 200 HNLREVADACVALIKTPKLSDEELYTLIAGPDYPGGGQIISSGAEIAAAYRTGRGSLKVR 259 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAK------------------RI 295 ARW +EE+ RG W +VV E+P V R++E+I E+ K + Sbjct: 260 ARWKIEELARGQWQLVVQELPPGVSTQRVLEEIEEITNPKIKLGKKALSLDQVQLKQSML 319 Query: 296 PLLEDIRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQ 353 +L+ +RDES++D VR+V PK L+ ++ + +E+ P+NM ++ + P Sbjct: 320 AVLDVVRDESSKDAAVRLVFEPKTSRTAQAELINTLLSHTSLESSSPINMTMIGLDGRPT 379 Query: 354 VMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP 413 L +L EW+A R+ + +RS R+ + R+ IL+G LNIDE+IAIIR D+P Sbjct: 380 QKSLRQMLNEWIAFRQTTIEKRSQHRLDKVLARIHILEGRQTVLLNIDEVIAIIRQSDEP 439 Query: 414 KPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWN 473 K +++RFSL++ Q + IL +RLR L +LE +I+ EL L E+ +++ +L N Sbjct: 440 KSALIARFSLSDRQAEDILEIRLRQLARLEAIKIEQELKTLREEQGRLEDILG------N 493 Query: 474 QIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL 533 A +KEI + + R T + A+K ++ + + EP+TVV+S++GW+R+ Sbjct: 494 PTALRRLMIKEIEADAKQFADPRRTLIQ---AEKKSVLEVKVLDEPVTVVVSSKGWVRAR 550 Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593 H S+ FK GD+L T D +L ++G+ Y++P L RG G+ + L Sbjct: 551 GGHGHAPSSFAFKAGDALYGTFECRTVDTLLAFGSNGRLYSVPVAMLPGARGDGQPVTTL 610 Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653 IDL ++ F ++ LL+ SS G F+ +++ R GK F+ ++ E + Sbjct: 611 IDLESGTQLLHYFAGPASAMLLLSSSGGYGFLATVENMVSRNRSGKAFITLAEGETLCRP 670 Query: 654 VKVTG----------DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKD 694 V+G HVA +++L F I +I +M + G+G+ L +D Sbjct: 671 SHVSGASGSQPLPPATHVACASTGQRILTFDIGEIKQMEKGGRGLMLIDLED 722 >gi|170700643|ref|ZP_02891641.1| DNA topoisomerase IV, A subunit [Burkholderia ambifaria IOP40-10] gi|170134462|gb|EDT02792.1| DNA topoisomerase IV, A subunit [Burkholderia ambifaria IOP40-10] Length = 773 Score = 503 bits (1295), Expect = e-140, Method: Compositional matrix adjust. Identities = 282/704 (40%), Positives = 420/704 (59%), Gaps = 36/704 (5%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 + A++L E+ YL+YA+S +K RA+PD+ DG KPV RRI+ AM+EMGL A KS Sbjct: 16 DADALTLGNYAEQAYLSYAVSVVKSRALPDVCDGQKPVQRRILFAMNEMGLGPDAKPVKS 75 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 AR+VG+V+GK HPHGDQS YD+LVRLAQ F RYPLI GQGNFG+ DGD AAA RYTEAR Sbjct: 76 ARVVGDVLGKYHPHGDQSAYDALVRLAQDFSLRYPLIDGQGNFGSRDGDGAAAMRYTEAR 135 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 +T +++L+L +D+ VDF Y+ EP PS+ P +L NG SGIAVG+AT IPSHN Sbjct: 136 LTPISKLLLDEIDQGTVDFMPNYDGSFEEPKTLPSRMPFVLLNGASGIAVGLATEIPSHN 195 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 ++E+ AA+ALI NP+++ +L+ I GPDFP GG I+ S I +Y GRG +VRAR Sbjct: 196 LREVAAAAVALIRNPKLTHAELMNLIPGPDFPGGGQIISSDTEIAAAYETGRGSLKVRAR 255 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAK------------------RIPL 297 W +E++ RG W +VVTE+P +++E+I EL K + L Sbjct: 256 WKIEDLARGQWQLVVTELPPSTSGQKVLEEIEELTNPKLKLGKKTLTPEQLNTKKAMLDL 315 Query: 298 LEDIRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVM 355 L+ +RDES ++ VR+V PK+R++D + ++ + +E+ LN+ ++ P Sbjct: 316 LDAVRDESGKEAAVRLVFEPKSRTIDQTEFVNTLLAYTSLESNATLNLVMIGADGRPGQK 375 Query: 356 PLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP 415 L IL EW+ R+ + RR R+ +D R+ IL+G +I +LNIDE+I IIR D+PK Sbjct: 376 GLLTILDEWVTFRQLTMTRRCRHRLAKVDDRIHILEGRMIVFLNIDEVIRIIREADEPKA 435 Query: 416 VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQI 475 ++S F LT+ Q + IL +RLR L +LE+ +I+ EL+ L EK K++ LL N+ Sbjct: 436 ALMSAFGLTDRQAEDILEIRLRQLARLEKIKIEKELEALRDEKAKLEELLA------NES 489 Query: 476 ACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKS 535 A + +KEI + + G R T + + +AT +A + EP+TVV+S +GW+R+LK Sbjct: 490 AMKRLMIKEIETDAKQYGDDRRTLIQQEK--RATF-EAKVVDEPVTVVVSQKGWVRALKG 546 Query: 536 HSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLID 595 H +D + FK GD L A T DR++ + G+ Y++ L GRG G + LI+ Sbjct: 547 HGLDPAGFTFKAGDHLYAAFQCRTPDRLIAWGSSGRVYSVDVSVLPGGRGDGVPVTSLIE 606 Query: 596 LNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE----EKMK 651 L ++ F +LL+ SS G F+ + ++++ + GK F+ + S M Sbjct: 607 LESGSHLMHYFAAPVDQQLLLASSNGFGFLAKVGDMVSRVKAGKAFMTIDSGAVPLAPMP 666 Query: 652 LVVKVTGDHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKD 694 ++ T VA + +LL+F +D++ +S G+GV L + D Sbjct: 667 VLPNAT--QVACLSSGGRLLVFGMDEMKTLSGGGRGVILMALDD 708 >gi|145297605|ref|YP_001140446.1| DNA topoisomerase IV subunit A [Aeromonas salmonicida subsp. salmonicida A449] gi|142850377|gb|ABO88698.1| topoisomerase IV subunit A [Aeromonas salmonicida subsp. salmonicida A449] Length = 764 Score = 503 bits (1295), Expect = e-140, Method: Compositional matrix adjust. Identities = 280/755 (37%), Positives = 443/755 (58%), Gaps = 27/755 (3%) Query: 6 ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65 +S++ L + V+ +R E+ YL Y++ I +RA+P + DG KPV RRII+AMSE+G Sbjct: 1 MSDAIELSLDGVERQPMRTFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELG 60 Query: 66 LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124 L + KKSAR VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D Sbjct: 61 LSALSKHKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPK 120 Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184 S AA RYTEAR+++ +EL+L + + VD+ ++ EPVV P++ P++L NG +GIA Sbjct: 121 SFAAMRYTEARLSRFSELLLSELGQGTVDWTPNFDGTMKEPVVLPARLPHILLNGITGIA 180 Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244 VGMAT IP HN +E+ A L+DNP ++ L+ +I GPD+PT I+ R+ I + Y Sbjct: 181 VGMATDIPPHNAREVAYACAELLDNPNAGLDALMAHIQGPDYPTSAEIITPRDDIRKIYE 240 Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304 G+G + RA W EE G IV+T +P+Q ++++E+IA ++AK++P++ D+RDE Sbjct: 241 TGKGSIKQRAVWN-EEDGD----IVITALPHQASGAKIMEQIAAQMVAKKLPMVTDLRDE 295 Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362 S + R+V+ P++ +D + LM +F +D+E + +N+N+L + PQV L IL Sbjct: 296 SDHENPTRLVIIPRSNRVDMEALMAHLFATTDLEKNYRVNLNILGLDNRPQVKTLKMILS 355 Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422 EW+ RRE + RR +R+ + R+ IL+GLL+AYLNIDE+I IIR ED+P VMV RF+ Sbjct: 356 EWIIFRRETVRRRLQYRLDKVLARLHILEGLLVAYLNIDEVIEIIRTEDEPGKVMVERFN 415 Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482 ++E Q +AIL L+LR L KLEE+++++E D L E++K++ LL S +++ N + Sbjct: 416 ISETQAEAILELKLRHLAKLEEFKLRAEQDELAIERDKLELLLGS-ERRLNTLL-----K 469 Query: 483 KEIFSKSTDLG-RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS 541 KE+ + + G RRT E + A A ++ + EP+TV++S++GW+R+ K H VD++ Sbjct: 470 KELLADAEKYGDDRRTPLVERASA-VALTEKELTPSEPVTVILSDKGWVRAAKGHDVDVA 528 Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD 601 L +K GD + + + LST G+ Y L A L S R GE + L ++ Sbjct: 529 GLSYKAGDGYLAHACGRSNQQAVFLSTLGRTYALEAHTLPSARSQGEPLTGRFALGAGEE 588 Query: 602 IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--- 658 + + + L+ S G F+ ++I + GK L V E + + + G Sbjct: 589 VRHLVMGNEGEPYLICSDAGYGFVCTYDDLIGKNKNGKALLTV-PEGGLVMAPQKIGSPE 647 Query: 659 -DHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISD-----VICFKICEGLTWI 712 D + ++L+F ++ +P + +GKG +L S + V+ I +G Sbjct: 648 TDLCMAISNEGRMLLFPLNTLPVLGKGKGNKLISIPSARVKAREEFMVMAAIIPQGQYVT 707 Query: 713 DSAG-RSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746 AG R DL + G+RG G+ +P+G R Sbjct: 708 LFAGKRKLTLKPADLDYYRGERGRRGAKLPRGLQR 742 >gi|165975992|ref|YP_001651585.1| DNA topoisomerase IV subunit A [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|165876093|gb|ABY69141.1| topoisomerase IV subunit A [Actinobacillus pleuropneumoniae serovar 3 str. JL03] Length = 736 Score = 503 bits (1294), Expect = e-140, Method: Compositional matrix adjust. Identities = 267/735 (36%), Positives = 443/735 (60%), Gaps = 26/735 (3%) Query: 23 RFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEV 82 RF E+ YL Y++ I +RA+P + DG KPV RRII+AMSE+GL+ A +KKSAR VG+V Sbjct: 5 RFT-EDAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAMSELGLNASAKYKKSARTVGDV 63 Query: 83 IGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQVAE 141 +GK HPHGD + Y+++V +AQPF RYPLI GQGN+G D S AA RYTE++++++AE Sbjct: 64 LGKFHPHGDSACYEAMVLMAQPFSYRYPLIDGQGNWGAPDDPKSFAAMRYTESKLSKMAE 123 Query: 142 LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICE 201 ++L + + VD++ ++ EP P++ P++L NGT GIAVGMAT IP HN+ E+ E Sbjct: 124 VLLGELGQGTVDYQPNFDGSLEEPKYLPARLPHILLNGTMGIAVGMATDIPPHNINELAE 183 Query: 202 AALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEV 261 A++ L++NP+ S+ +L+ + GPD+PT I+ + I + Y G+G ++RA W E+ Sbjct: 184 ASVMLLENPKASLAELMTVVQGPDYPTEAEIITPKADIAKMYEQGKGSIKMRAVWKKED- 242 Query: 262 GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFPKNRS 319 IV++ +P+Q S++IE+IA + K++P+++DIRDES + +RIVL P++ Sbjct: 243 ----GEIVISALPHQASPSKVIEQIATQMRNKKLPMVDDIRDESDHENPIRIVLVPRSNR 298 Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379 +D + LM+ +F +D+E + +NMN++ + P V L IL EWL RR + RR ++R Sbjct: 299 IDFEALMDHLFATTDLEKSYRVNMNMIGLDGKPAVKNLHTILTEWLVFRRTTVTRRLNYR 358 Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSL 439 + I R+ IL GL+IA+LNIDE+I IIRNED+PK +++RF+L+E Q +AILNLRLR L Sbjct: 359 LDKILNRLHILDGLMIAFLNIDEVIEIIRNEDEPKTALMARFNLSEAQAEAILNLRLRHL 418 Query: 440 RKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTF 499 KLEE+++++E L E++++ L S ++ I EI+ + F+ R + Sbjct: 419 AKLEEHELQAEKSQLEKERDELQLTLGSERRLNTLIKKEIQADAKAFASP-----RHSPL 473 Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHT 559 E + A KA + + E +TV++S +GW+R K H +D+ L ++ GD + + Sbjct: 474 VERAEA-KAISESDLTPTEDVTVILSEKGWVRCAKGHDIDVQGLSYRAGDGYLAHAYGRS 532 Query: 560 TDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSS 619 ++ L + G+AY L +L S R GE + I L + + +S K+L+ S Sbjct: 533 NQPVVFLDSTGRAYALDPTSLPSARSQGEPLTGKITLPDGATVQQVLMANSDTKVLMASD 592 Query: 620 KGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVAVVGENRKLLIFSID 676 G FI ++++ + GK + ++ K+ +L+ + + ++L+F I Sbjct: 593 SGYGFICSFEDLVSRNKAGKAVISLTENAKVLPPQLIDNEAELSLVAMSSVGRMLVFPIT 652 Query: 677 QIPEMSRGKGVRL-----QSYKDGG--ISDVICFKICEGLTWIDSAGRSYNRSENDLLGW 729 ++P++S+GKG ++ Q+ K+G ++ ++ K + L ++ S R +D+ + Sbjct: 653 ELPQLSKGKGNKIINISAQAAKEGNELLARLLLVKPTQSLVFV-SGKRKITLKPSDIDNY 711 Query: 730 LGKRGGVGSLVPKGF 744 G+R GS + +G Sbjct: 712 RGERARKGSQLVRGL 726 >gi|224826726|ref|ZP_03699826.1| DNA topoisomerase IV, A subunit [Lutiella nitroferrum 2002] gi|224600946|gb|EEG07129.1| DNA topoisomerase IV, A subunit [Lutiella nitroferrum 2002] Length = 791 Score = 503 bits (1294), Expect = e-140, Method: Compositional matrix adjust. Identities = 283/750 (37%), Positives = 427/750 (56%), Gaps = 36/750 (4%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 + L E YL YA+S +K RA+P++ DG KPV RRI++AM +MGL GA KSAR+V Sbjct: 37 IPLDLYAERAYLEYAMSVVKGRALPEVADGQKPVQRRILYAMRDMGLTHGAKPVKSARVV 96 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 GE++GK HPHGD S Y++LVR+AQ F RYPLI GQGNFG+ DGD AAA RYTEAR+T + Sbjct: 97 GEILGKYHPHGDSSAYEALVRMAQDFTLRYPLIDGQGNFGSRDGDGAAAMRYTEARLTPI 156 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 AEL+L +D VDF Y+ EP + P++ P +L NG SGIAVG+AT IP HN+ E+ Sbjct: 157 AELLLSEIDMGTVDFVPNYDGAFDEPALLPARLPMVLLNGASGIAVGLATEIPPHNLTEV 216 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 AA+AL+DNPE+S +L+ Y+ GPDFP GG I+ E I+ +Y GRG RVRA+W VE Sbjct: 217 AGAAVALLDNPELSTAELMAYVPGPDFPGGGQIITPVEDILAAYESGRGSVRVRAKWEVE 276 Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAK------------------RIPLLEDI 301 ++ RG W ++VTE+P +++ +I E K + LL+ + Sbjct: 277 KLARGQWRVIVTELPPGSSAQKVLAEIEEATNPKVKSGKKTLTQDQQNLKSLMLSLLDRV 336 Query: 302 RDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359 RDES D VR+V PK+ DPD + + + +E LN+ ++ + P L Sbjct: 337 RDESDSDSPVRLVFEPKSSRQDPDEFINVLLAQTSLEGNAALNLVMIGLDGRPGQKGLKP 396 Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS 419 IL EWLA RR + RR R+ +D+R+ IL+G +IA+++IDE+I +IR D+PKP ++ Sbjct: 397 ILAEWLAFRRRTVTRRLEHRLSQVDKRIHILEGRMIAFIHIDEVIRVIRESDEPKPDLIK 456 Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479 F LTE Q + IL +RLR L +LE ++++ EL L E+E + LL + + + + Sbjct: 457 AFGLTEVQAEDILEIRLRQLARLEGFKLEKELSELREEREGLRHLLATP----DALTGLM 512 Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539 R+ EI + + G R + E+ A++A L Q I EP+T+++S +GWIR+ H+VD Sbjct: 513 RD--EIQADAAKYGDARRS--EIKAAERAVLTQT-IADEPVTIILSQKGWIRARVGHNVD 567 Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHN 599 LSAL FK+GD+L + T +++L + G+AYT+ + +GRG G + L++L Sbjct: 568 LSALSFKDGDALATVVETRTVWPVIVLDSKGRAYTVDPAVVPTGRGDGVPVASLVELQDG 627 Query: 600 QDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD 659 + + ++ +S G FI + ++ + GK F+ + E + + V Sbjct: 628 AKPAQLLSGPDSTRFVLANSGGYGFIAKIGDMAGRVKAGKAFMTLEDGESVLAPLHVPAS 687 Query: 660 ------HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWID 713 + +N +LL F ++ E+++G+G+ L +G I + Sbjct: 688 AKLDALRLVAAADNGRLLAFPAGELKELAKGRGLMLMQLGEGEALTAIGLVGGDKAQLTA 747 Query: 714 SAGRSYNRSENDLLG-WLGKRGGVGSLVPK 742 + R E L + GKR G L+PK Sbjct: 748 QSVRGKQSEEKVALAEYDGKRARRGQLLPK 777 >gi|315633997|ref|ZP_07889286.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Aggregatibacter segnis ATCC 33393] gi|315477247|gb|EFU67990.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Aggregatibacter segnis ATCC 33393] Length = 750 Score = 503 bits (1294), Expect = e-140, Method: Compositional matrix adjust. Identities = 272/747 (36%), Positives = 447/747 (59%), Gaps = 22/747 (2%) Query: 9 SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68 ++++ E ++ + LR E YL Y++ I +RA+P + DG KPV RRII+AMSE+GL+ Sbjct: 2 TDSINYEGIEQMPLRHFTERAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAMSELGLNA 61 Query: 69 GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAA 127 A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G +D S A Sbjct: 62 AAKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAVDDPKSFA 121 Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187 A RYTE+R+++++E++L + + VD++ ++ EP P++ P++L NGT+GIAVGM Sbjct: 122 AMRYTESRLSKISEVLLAELGQGTVDYQPNFDGTLEEPQYLPARLPHILLNGTTGIAVGM 181 Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247 AT IP HN+ EI +AA+ L+DNP+ ++ LL + GPDFPT I+ +E I + Y+ GR Sbjct: 182 ATDIPPHNINEIADAAVMLLDNPKTTLNDLLTVVQGPDFPTEAEIISPKEEIRKIYQQGR 241 Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307 G ++RA W E+ I+++ +P+Q S++I +IAE + AK++P++EDIRDE+ Sbjct: 242 GSIKMRAAWKKED-----GEIIISALPHQASPSKVIAQIAEQMTAKKLPMVEDIRDEADH 296 Query: 308 D--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365 + VRIV+ P++ +D D +M +F +D+E + +NMN++ + P V L IL EWL Sbjct: 297 ENPVRIVIVPRSNRVDTDAMMAHLFATTDLEKSYRVNMNMIGLDYKPAVKNLLEILTEWL 356 Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425 RR + RR +R+ + R+ IL+GL+IA+LNIDE+I IIR+ED+PK +++RF+L++ Sbjct: 357 TFRRTTVTRRLQYRLDKVLARLHILQGLMIAFLNIDEVIEIIRHEDEPKAELMARFNLSD 416 Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485 Q +AILNLRLR L KLEE+Q+++E L E+ ++ +L S ++ + EI++ + Sbjct: 417 AQAEAILNLRLRHLAKLEEHQLQAEQAELEKERSSLEEILGSERRLNTLLKKEIQQDAKT 476 Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545 ++ RR+ E + A KA + M+ EP+TV++S GW+R K H +D L + Sbjct: 477 YASP-----RRSPLVERAEA-KAIAENEMLPTEPVTVILSEMGWVRCAKGHDIDPQGLSY 530 Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605 K GD + + + + + G++Y L +L S R GE + + L + Sbjct: 531 KAGDKYLAHAYGKSNQPAVFIDSTGRSYALDPLSLPSARSQGEPLTGKLTLPAGATVDQL 590 Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--KLVVKVTGDHVAV 663 + + LL+ S G FI + ++++A + GK + + K+ L +K + Sbjct: 591 LIENEDQPLLMASDAGYGFICKFADLVARNKAGKALISLPENAKVLPPLTLKNPTALLVA 650 Query: 664 VGENRKLLIFSIDQIPEMSRGKG---VRLQSYKDGGISDVIC--FKICEGLTWIDSAG-R 717 + ++LIF +PE+S+GKG V + S S+++ I E + + +G R Sbjct: 651 LTSAGRMLIFPAQDLPELSKGKGNKIVTIPSANAKARSELLVRLLLIEENSSLVFHSGKR 710 Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGF 744 DL + +RG G+ +P+G Sbjct: 711 KVTLKPEDLQKFRAERGRKGTQLPRGL 737 >gi|296134958|ref|YP_003642200.1| DNA topoisomerase IV, A subunit [Thiomonas intermedia K12] gi|295795080|gb|ADG29870.1| DNA topoisomerase IV, A subunit [Thiomonas intermedia K12] Length = 777 Score = 503 bits (1294), Expect = e-140, Method: Compositional matrix adjust. Identities = 264/706 (37%), Positives = 412/706 (58%), Gaps = 37/706 (5%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 E++ +++L YL YA+S +K RA+PD+ DG KPV RRI++AM MGL A Sbjct: 14 EDDTDSLALGDYARRAYLDYAISVVKGRALPDVCDGLKPVQRRILYAMWRMGLTADAKPV 73 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSAR+VG+V+G+ HPHGDQ+ YD+LVRL+Q F QRYPLI GQGNFG+ DGD AAA RYTE Sbjct: 74 KSARVVGDVLGRFHPHGDQAAYDALVRLSQDFAQRYPLIDGQGNFGSRDGDGAAAMRYTE 133 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 AR+ +A L+L +D DF Y+ +EP + P++ P +L NG SGIAVGMAT IP+ Sbjct: 134 ARLAPIARLLLGEIDAGTADFIPNYDGSTTEPRLLPARLPFVLLNGASGIAVGMATEIPA 193 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN++E+ A +AL+ NP + + L + GPDF TGG ++ S + I +Y +GRG +VR Sbjct: 194 HNLREVASACVALLKNPRLELADALALMPGPDFATGGQLISSPQDIAAAYAVGRGSLKVR 253 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP----------------- 296 ARW VEE+ RG W +V+ E+P+ ++E+I EL K P Sbjct: 254 ARWTVEELARGQWQLVINELPHGTSTQMVLEEIEELSNPKIRPGKKALAPEQIALKATLL 313 Query: 297 -LLEDIRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQ 353 LL+ +RDES + VR+V P++ +D + ++ + +ET P+N+ ++ P+ Sbjct: 314 NLLDTVRDESGREAAVRLVFEPRSSRIDQAEFVNTLLARTSLETSVPINLVMIGTDGKPR 373 Query: 354 VMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP 413 L IL+EW+A+RR+ + RRS R++ +D R+ IL+G LN+DE+I IRN D P Sbjct: 374 QKGLMDILREWVAYRRDTVQRRSKHRLEQVDARIHILEGRQQVLLNLDEVIETIRNSDDP 433 Query: 414 KPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWN 473 +P +++RF LTE Q D IL++RLR L +LE +I EL E ++ LL K Sbjct: 434 RPALMARFDLTELQADDILDMRLRQLARLEAIRIDKELAAQRTEAAELQKLLADEKAMTR 493 Query: 474 QIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL 533 +I + EI + + G R T + A++ + + + E +TV++S +GW+R Sbjct: 494 RI------ISEIEADAKQFGDDRRTLIQ---AEQRAVAEVKVVDEAVTVIVSQKGWLRVQ 544 Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593 K H + LSAL FK GD+L + D +++L +DG+AY++ +L GRG G+ + Sbjct: 545 KGHGLVLSALTFKPGDALYATFECRSVDPLVVLGSDGRAYSMDVADLPGGRGDGQPVTSF 604 Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK-- 651 I+L + T LL+ +++G F+ S+ ++ R GKTF+ + + ++ Sbjct: 605 IELAPGTQALHYLAGARTTALLLWTAQGFGFVTHISDALSRQRAGKTFVTLEDGDTLQRP 664 Query: 652 LVVKVTGD-----HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQS 691 LV+ D +A + + +LL++ ++ ++R G+G+ L + Sbjct: 665 LVLDTDADGSPVGRLATLSADGRLLLYPAAEVKTLARGGRGITLMA 710 >gi|28198504|ref|NP_778818.1| DNA topoisomerase IV subunit A [Xylella fastidiosa Temecula1] gi|182681182|ref|YP_001829342.1| DNA topoisomerase IV subunit A [Xylella fastidiosa M23] gi|28056588|gb|AAO28467.1| topoisomerase IV subunit A [Xylella fastidiosa Temecula1] gi|182631292|gb|ACB92068.1| DNA topoisomerase IV, A subunit [Xylella fastidiosa M23] Length = 749 Score = 502 bits (1293), Expect = e-140, Method: Compositional matrix adjust. Identities = 277/737 (37%), Positives = 427/737 (57%), Gaps = 23/737 (3%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 + LR E YL Y++ + +RA+P + DG KPV RRII+AM E+ L+ A KKS R V Sbjct: 15 MPLREYAERAYLDYSMYVVLDRALPFIGDGLKPVQRRIIYAMHELRLNPKAKPKKSVRAV 74 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQ 138 G+VIGK HPHGD + Y++LV +AQPF RYPLI GQGNFG+ D S AA RYTE+++T Sbjct: 75 GDVIGKYHPHGDLACYEALVLMAQPFSYRYPLIEGQGNFGSSDDPKSFAAMRYTESKLTP 134 Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198 ++E++L + E V++ ++ EP PS+ P+LL NGT+GIAVGMAT +P HN+ E Sbjct: 135 ISEILLSELSEGTVNWITNFDGTLEEPAWLPSRLPHLLLNGTTGIAVGMATDVPPHNLNE 194 Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258 I A + L+DNP +I L +YI GPD+PT I+ + Y G G R RA + Sbjct: 195 IASALIHLLDNPNATIAALCQYIRGPDYPTAAEIITPPNDLQNLYETGNGSVRTRATYHK 254 Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLL--EDIRDES--AEDVRIVLF 314 E+ +V+T +PYQV S++IE+IA+ I +K++P L E +RDES VRIVLF Sbjct: 255 ED-----GNVVITSLPYQVSPSKVIEQIAQQIRSKKLPWLDGEGVRDESDHKNPVRIVLF 309 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 P+++ +D + LM +F +D+E +N+NV+ + PQV PL +L EWL+ R + + R Sbjct: 310 PRSQRIDVEQLMGHLFATTDLEKSHRVNLNVIGLDGRPQVKPLKQLLSEWLSFRSDTVTR 369 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNL 434 R +R+Q ++ R+ +L+GLLIA+LN+D++I IIRNED+PKPV+++RF L++ Q + IL+ Sbjct: 370 RLKYRLQKVESRLHLLEGLLIAFLNLDKVIHIIRNEDEPKPVLIARFGLSDAQTEYILDT 429 Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494 +LR L +LEE I+SE D L E+++I+ +L+S Q I E+ + + G Sbjct: 430 KLRQLARLEEMAIRSEQDALTKERDEINVILDSDVQLKKLIK------DELLADAKTFGD 483 Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIA 554 R +A +A + ++ EP+TVV+S +GWIR+ K H VD S + ++EGD L A Sbjct: 484 ARRAPLVARQAAQAIDESELVASEPMTVVLSEKGWIRAAKGHDVDPSGMFYREGDRLLAA 543 Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614 + +T ++ L ++G+AY+ L S RG+GE + D+ Sbjct: 544 VRTRSTHQVSFLDSEGRAYSTLVHTLPSARGNGEPLTGRFSPAPGASFQAMASADNDKLF 603 Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGDHVAVVGENRKLL 671 ++ SS G FI + + GK + ++ + + + V D + V LL Sbjct: 604 VLASSHGYGFITRFENLTGRNKAGKAMIHLTPGAQVMGLAPLTNVQHDRIVAVTSAGNLL 663 Query: 672 IFSIDQIPEMSRGKGVRLQSYKDGGISD---VICFKICEGLTWIDSAG-RSYNRSENDLL 727 + ++PE+ +GKG +L ++ V + T + +G R+ S DL Sbjct: 664 AIAASELPELDKGKGNKLIDIPKTKLATERLVAVIAVASSHTLLLYSGERTMRLSFKDLE 723 Query: 728 GWLGKRGGVGSLVPKGF 744 +L RG G L+P+G+ Sbjct: 724 AYLDTRGSRGQLLPRGW 740 >gi|149909420|ref|ZP_01898075.1| DNA topoisomerase IV, A subunit [Moritella sp. PE36] gi|149807530|gb|EDM67479.1| DNA topoisomerase IV, A subunit [Moritella sp. PE36] Length = 751 Score = 502 bits (1293), Expect = e-140, Method: Compositional matrix adjust. Identities = 278/745 (37%), Positives = 433/745 (58%), Gaps = 25/745 (3%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 E V+ LR E+ YL Y++ I +RA+P + DG KPV RRI +AMSE+GL GA +KK Sbjct: 10 EGVEEQPLREFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRITYAMSELGLHAGAKYKK 69 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTE 133 SAR VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S AA RYTE Sbjct: 70 SARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 129 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 A++++ AE++L V VD+ ++ EP + P++ P++L NG +GIAVGMAT IP Sbjct: 130 AKLSKFAEVLLGEVGLGTVDWSPNFDGTMKEPQLLPARLPHILLNGVTGIAVGMATDIPP 189 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HNV+E+ A L LIDNP+ + +L+ Y+ GPD+PT I+ + I + Y G+G ++R Sbjct: 190 HNVREVTNACLHLIDNPKAELSELMAYVKGPDYPTEAEIITPEKDIAKIYETGKGSIKMR 249 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRI 311 A + +E S IV++ +P+QV +++E+IA + AK++P++ D+RDES + R+ Sbjct: 250 AVFTIE-----SGDIVISALPHQVSGGKILEQIAAQMQAKKLPMVADLRDESDHENPTRL 304 Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371 V+ P++ +D + LM +F +D+E F +N+N++ + PQV L IL EWL R Sbjct: 305 VIIPRSNRIDIEQLMAHLFASTDLEKNFRVNLNMIGLNEKPQVKGLKKILSEWLVFRHST 364 Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431 + RR FR+ + R+ +L GLLIA+LNIDE+I IIRN D PK ++SRF L+ Q +A+ Sbjct: 365 VRRRLQFRLDKVLSRLHMLDGLLIAFLNIDEVIDIIRNYDDPKAELISRFDLSVKQAEAV 424 Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491 L L+LR L KLEE +I+ E L E+ K++ LL+S + ++A ++ KE+ + + Sbjct: 425 LELKLRHLAKLEEMRIRGEQGELNTERHKLEQLLSSDR----RLATLVK--KELIADAEK 478 Query: 492 LG-RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDS 550 G RR+ E A KA ++ ++ E +TVV+S +GW R K H VD L +K D Sbjct: 479 FGDERRSPIIERKEA-KALTEKELMPNEAVTVVLSQQGWARCAKGHDVDAKGLSYKASDG 537 Query: 551 LKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDS 610 K A + + + + G+++ L A L S R GE + L + V A + D Sbjct: 538 YKDAAEGRSNCPAVFIDSSGRSFALDAHTLPSARSQGEPLTTRFTLAAGKTFVHALMADD 597 Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE---KMKLVVKVTGDHVAVVGEN 667 + + L+ S G FI + S++I+ + GK L + + + + V + DH ++ Sbjct: 598 SQQYLLSSDAGYGFIGKFSDMISRNKNGKALLTLPAAGLVIEPQAVTDIATDHCLIISNE 657 Query: 668 RKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFK-----ICEGLTWIDSAG-RSYNR 721 ++LIF + +P +S+GKG +L + + F + EG + AG R Sbjct: 658 GRMLIFPLSSLPLLSKGKGNKLMNIPSARVKSREEFVQMLTIVPEGQSVTLYAGKRKLTL 717 Query: 722 SENDLLGWLGKRGGVGSLVPKGFPR 746 DL + G+RG G +P+G R Sbjct: 718 KPADLEHYKGERGRRGFKLPRGLQR 742 >gi|307611863|emb|CBX01579.1| DNA topoisomerase IV, A subunit [Legionella pneumophila 130b] Length = 751 Score = 502 bits (1293), Expect = e-140, Method: Compositional matrix adjust. Identities = 287/755 (38%), Positives = 441/755 (58%), Gaps = 35/755 (4%) Query: 6 ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65 I N N + E+ L E+ YL Y++ I +RA+P + DG KPV RRI++AMSE+G Sbjct: 4 IPNMNEVTEKK----PLTEFTEKAYLDYSMYVILDRALPSIADGLKPVQRRIVYAMSELG 59 Query: 66 LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124 L A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF RYP + GQGN+G+ D Sbjct: 60 LKATAKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPFVDGQGNWGSPDDPK 119 Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184 S AA RYTEAR++ A+++L + + VD+ D ++ EP + P++ PN+L NG +GIA Sbjct: 120 SFAAMRYTEARLSLYADVLLGELLQGTVDWVDNFDGTLQEPALLPARLPNILLNGATGIA 179 Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244 VGMA+ I HN+ E+ A + L+DNP+ I+ + EYI GPDFPT I+ E+I Y Sbjct: 180 VGMASDILPHNLTEVANACIHLLDNPQADIKTICEYIKGPDFPTEAEIISPSETIRAMYE 239 Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304 G G ++RA + E+ IV+T +PYQV +R++E+IA + K++P++ED+RDE Sbjct: 240 SGNGSIKMRAIYTQEKQN-----IVITALPYQVSGARVMEQIALQMQQKKLPMVEDLRDE 294 Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362 S + R+V+ P++ +D + LM +F +D+E + +N N++ + P+V L IL Sbjct: 295 SDHEHPTRLVIIPRSNRVDIESLMSHLFATTDLERSYRVNFNMIGLDGKPRVKGLLAILT 354 Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422 EWL R + RR FR++ + R+ IL+GLLIAYLNIDE+IAIIR ++PK ++SRF+ Sbjct: 355 EWLEFRLATVKRRLQFRLEKVLERIHILEGLLIAYLNIDEVIAIIREHEQPKQGLISRFN 414 Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482 LTE Q +AIL ++LR L KLEE +++ ELD L E++ + L S + EI + Sbjct: 415 LTERQAEAILEMKLRHLAKLEEIKLRGELDELSDERDTLQKTLASHFLLKELVKEEITKD 474 Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQA-MIEKEPITVVISNRGWIRSLKSHSVDLS 541 ++ F RR+ ++R D L++ ++ EPITVV+S GW+R+ K H VD Sbjct: 475 RDEFGDP-----RRSPI--ITREDSQALKEEDILPNEPITVVLSKNGWVRAAKGHDVDGK 527 Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD 601 L +K GD K A T ++L +GK Y+LP L S RG GE L LN + Sbjct: 528 ELSYKAGDEFKAQTLARTNQQVLFFDGEGKVYSLPGHVLPSARGQGEP--LTGKLNPAEG 585 Query: 602 IVTAFVY--DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKV 656 ++ + + K+L+ + G FI + ++ R GK +K+S + +L+ Sbjct: 586 VLFEAIVGGEPEQKVLLATDSGYGFIAKIEDLYVKNRNGKACIKLSENSHILPPRLIPNR 645 Query: 657 TGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSY-------KDGGISDVICFKICEGL 709 VA +LLIFS++++PE+SRGKG +L S ++ I D+ + L Sbjct: 646 EQLFVACATNVGRLLIFSLEELPELSRGKGNKLISIPAAKAVSREEYIVDMQVLTTNDSL 705 Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGF 744 T + + R + DL + G+RG G+ +P+G Sbjct: 706 T-VYAGKRHFTLKGEDLTHYKGERGRRGNRLPRGL 739 >gi|172061320|ref|YP_001808972.1| DNA topoisomerase IV subunit A [Burkholderia ambifaria MC40-6] gi|171993837|gb|ACB64756.1| DNA topoisomerase IV, A subunit [Burkholderia ambifaria MC40-6] Length = 773 Score = 502 bits (1293), Expect = e-140, Method: Compositional matrix adjust. Identities = 281/704 (39%), Positives = 420/704 (59%), Gaps = 36/704 (5%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 + A++L E+ YL+YA+S +K RA+PD+ DG KPV RRI+ AM+EMGL A KS Sbjct: 16 DADALTLGNYAEQAYLSYAVSVVKSRALPDVCDGQKPVQRRILFAMNEMGLGPDAKPVKS 75 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 AR+VG+V+GK HPHGDQS YD+LVRLAQ F RYPLI GQGNFG+ DGD AAA RYTEAR Sbjct: 76 ARVVGDVLGKYHPHGDQSAYDALVRLAQDFSLRYPLIDGQGNFGSRDGDGAAAMRYTEAR 135 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 +T +++L+L +D+ VDF Y+ EP PS+ P +L NG SGIAVG+AT IPSHN Sbjct: 136 LTPISKLLLDEIDQGTVDFMPNYDGSFEEPKTLPSRMPFVLLNGASGIAVGLATEIPSHN 195 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 ++E+ AA+ALI NP+++ +L+ I GPDFP GG I+ S I +Y GRG +VRAR Sbjct: 196 LREVAAAAVALIRNPKLTHAELMNLIPGPDFPGGGQIISSDTEIAAAYETGRGSLKVRAR 255 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAK------------------RIPL 297 W +E++ RG W +VVTE+P +++E+I EL K + L Sbjct: 256 WKIEDLARGQWQLVVTELPPSTSGQKVLEEIEELTNPKLKLGKKTLTPEQLNTKKAMLDL 315 Query: 298 LEDIRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVM 355 L+ +RDES ++ VR+V PK+R++D + ++ + +E+ LN+ ++ P Sbjct: 316 LDAVRDESGKEAAVRLVFEPKSRTIDQTEFVNTLLAYTSLESNATLNLVMIGADGRPGQK 375 Query: 356 PLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP 415 L IL EW+ R+ + RR R+ +D R+ IL+G +I +LNIDE+I IIR D+PK Sbjct: 376 GLLTILDEWVKFRQLTMTRRCRHRLAKVDDRIHILEGRMIVFLNIDEVIRIIREADEPKA 435 Query: 416 VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQI 475 ++S F LT+ Q + IL +RLR L +LE+ +I+ EL+ L EK K++ LL N+ Sbjct: 436 ALMSAFGLTDRQAEDILEIRLRQLARLEKIKIEKELETLRDEKAKLEELLA------NES 489 Query: 476 ACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKS 535 A + +KEI + + G R T + + +AT +A + EP+TVV+S +GW+R+LK Sbjct: 490 AMKRLMIKEIETDAKQYGDDRRTLIQQEK--RATF-EAKVVDEPVTVVVSQKGWVRALKG 546 Query: 536 HSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLID 595 H +D + FK GD L A T DR++ + G+ Y++ L GRG G + LI+ Sbjct: 547 HGLDPAGFTFKAGDHLYAAFQCRTPDRLIAWGSSGRVYSVDVSVLPGGRGDGVPVTSLIE 606 Query: 596 LNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE----EKMK 651 L ++ F +LL+ SS G F+ + ++++ + GK F+ + + M Sbjct: 607 LESGSHLMHYFAAPVDQQLLLASSNGFGFLAKVGDMVSRVKAGKAFMTIDTGAVPLAPMP 666 Query: 652 LVVKVTGDHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKD 694 ++ T VA + +LL+F +D++ +S G+GV L + D Sbjct: 667 VLPNAT--QVACLSSGGRLLVFGMDEMKTLSGGGRGVILMALDD 708 >gi|206560813|ref|YP_002231578.1| DNA topoisomerase IV subunit A [Burkholderia cenocepacia J2315] gi|198036855|emb|CAR52755.1| topoisomerase IV subunit A [Burkholderia cenocepacia J2315] Length = 773 Score = 502 bits (1293), Expect = e-140, Method: Compositional matrix adjust. Identities = 290/753 (38%), Positives = 440/753 (58%), Gaps = 38/753 (5%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 + +A++L E+ YL+YA+S +K RA+PD+ DG KPV RRI+ AM+EMGL A KS Sbjct: 16 DAEALTLGNYAEQAYLSYAVSVVKSRALPDVCDGQKPVQRRILFAMNEMGLGPDAKPVKS 75 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 AR+VG+V+GK HPHGDQS YD+LVRLAQ F RYPLI GQGNFG+ DGD AAA RYTEAR Sbjct: 76 ARVVGDVLGKYHPHGDQSAYDALVRLAQDFSLRYPLIDGQGNFGSRDGDGAAAMRYTEAR 135 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 +T +A+L+L +D+ VDF Y+ EP PS+ P +L NG SGIAVG+AT IPSHN Sbjct: 136 LTPIAKLLLDEIDQGTVDFMPNYDGSFEEPKTLPSRMPFVLLNGASGIAVGLATEIPSHN 195 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 ++E+ AA+ALI NP+++ +L+ I GPDFP GG I+ S I +Y GRG +VRA+ Sbjct: 196 LREVAAAAVALIRNPKLTHAELMSLIPGPDFPGGGQIISSDTEISAAYETGRGSLKVRAK 255 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAK------------------RIPL 297 W +E++ RG W +VVTE+P +++E+I EL K + L Sbjct: 256 WKIEDLARGQWQLVVTELPPNTSGQKVLEEIEELTNPKLKLGKKTLTPEQLNTKKAMLDL 315 Query: 298 LEDIRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVM 355 L+ +RDES ++ VR+V PK+R++D + ++ + +E+ LN+ ++ P Sbjct: 316 LDAVRDESGKEAAVRLVFEPKSRTIDQTEFVNTLLAYTSLESNATLNLVMIGADGRPGQK 375 Query: 356 PLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP 415 L IL EW+ R+ + RR R+ +D R+ IL+G +I +LNIDE+I IIR D+PK Sbjct: 376 GLLTILDEWVKFRQLTMTRRCRHRLAKVDDRIHILEGRMIVFLNIDEVIRIIRESDEPKA 435 Query: 416 VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQI 475 ++S F L+E Q + IL +RLR L +LE+ +I+ EL+ L EK K++ LL N Sbjct: 436 ALMSAFGLSERQAEDILEIRLRQLARLEKIKIEKELEALRDEKAKLEELLA------NDS 489 Query: 476 ACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKS 535 A + +KEI + + G R T + + +AT +A + EP+TVV+S +GW+R+LK Sbjct: 490 AMKRLMIKEIEADAKQYGDDRRTLIQQEK--RATF-EAKVVDEPVTVVVSQKGWVRALKG 546 Query: 536 HSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLID 595 H +D + FK GD L A T DR++ + G+ Y++ L GRG G + LI+ Sbjct: 547 HGLDPAGFTFKAGDHLYAAFQCRTPDRLIAWGSSGRVYSVDVSVLPGGRGDGVPVTSLIE 606 Query: 596 LNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE----EKMK 651 L ++ + + +LL+ SS G F+ + ++++ + GK+F+ + + M Sbjct: 607 LESGSHLMHYYAAPADQQLLLASSNGFGFLAKVGDMVSRVKAGKSFMTIDAGAVPLAPMP 666 Query: 652 LVVKVTGDHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLT 710 ++ T VA + +LL+F +D++ +S G+GV L + D + V I Sbjct: 667 VLPNAT--QVACLSSGGRLLVFGMDEMKTLSGGGRGVILMALDDKE-TLVQALAIDPAGV 723 Query: 711 WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKG 743 + GR ++++D L + G +G KG Sbjct: 724 VLIGTGRG-GKAQDDTLSYAGLAPHIGKRARKG 755 >gi|304310491|ref|YP_003810089.1| Topoisomerase IV subunit A [gamma proteobacterium HdN1] gi|301796224|emb|CBL44432.1| Topoisomerase IV subunit A [gamma proteobacterium HdN1] Length = 751 Score = 502 bits (1293), Expect = e-140, Method: Compositional matrix adjust. Identities = 275/744 (36%), Positives = 444/744 (59%), Gaps = 25/744 (3%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 E+ V+ ++L+ E YL Y++ I +RA+P + DG KPV RRI++AMSE+GL A K Sbjct: 9 EDGVERLALKTYTERAYLDYSMYVILDRALPHIGDGLKPVQRRIVYAMSELGLKNSAKHK 68 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYT 132 KSAR VG+V+GK HPHGD + Y+++V +AQPF RY L+ GQGN+G+ D S AA RYT Sbjct: 69 KSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGSPDDPKSFAAMRYT 128 Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192 E+R++ AE++L + + VD++ ++ EPV+ P++ PN+L NG +GIAVGMAT IP Sbjct: 129 ESRLSPYAEVLLSELGQGTVDWQPNFDGTLEEPVLLPARLPNVLLNGATGIAVGMATDIP 188 Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252 HN+ E+ A + L+ +P S++ L E + GPDFPT I+ R ++ Y GRG ++ Sbjct: 189 PHNLGEVTRACIRLLKDPGCSLDDLCEDVPGPDFPTEAEIITPRHELIRMYATGRGSIKM 248 Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VR 310 RA + E GS IV+T +P+QV +R++E+IA+ + AK++P+++D+RDES + R Sbjct: 249 RAVYTRE----GS-DIVITALPHQVSGARILEQIAQQMNAKKLPMVQDLRDESDHENPTR 303 Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370 +V+ P++ +D + LM +F +D+E + +NMN++ + P+V L IL EWL R Sbjct: 304 LVIIPRSNRVDVEALMGHLFATTDLERNYRVNMNMIGLDGRPRVRGLYDILSEWLEFRIT 363 Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDA 430 + RR +R+ + R+ L+GLLIA+LNIDE+I IIR ED PKP ++ RF +++ Q +A Sbjct: 364 TVRRRLQWRLDKVLERLHKLEGLLIAFLNIDEVIHIIRTEDDPKPRLMERFGISDIQAEA 423 Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490 IL L+LR L KLEE +I+ E L E++ ++S+L S ++ N+I E+ E + + Sbjct: 424 ILELKLRHLAKLEEMKIRGEQAELEKERKDLESVLGSAQKLKNKIVKELEADIERYGDA- 482 Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDS 550 RR+ E A +A + ++ EP+TV++S +GW+R+ K H +D + L +K GD+ Sbjct: 483 ----RRSPLIEREEA-RAMDETELVGAEPVTVILSQKGWVRAAKGHDIDAAGLSYKTGDA 537 Query: 551 LKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDS 610 L + ++ + + G++YTLPA L S RG GE + + + Sbjct: 538 LLGIAQGKSNQTVIFIDSTGRSYTLPAHGLPSARGQGEPLIGKLTPPPGASFEALLMGAD 597 Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---DHVAVVGEN 667 + L+ S G F+++ S+ + GK L V K+ KV+ ++VA V + Sbjct: 598 HDRYLLASDAGYGFVMKLSDAETRNKAGKALLSVPENAKVLAPRKVSDIDREYVAAVAND 657 Query: 668 RKLLIFSIDQIPEMSRGKGVRLQSY-------KDGGISDVICFKICEGLTWIDSAGRSYN 720 +LL+F + ++PE++RGKG ++ ++ + DV+ + L I S R Sbjct: 658 GRLLVFPLKELPELARGKGNQMMGIPSAKAKAREEYLVDVLLMTEADQL-LICSGKRQLT 716 Query: 721 RSENDLLGWLGKRGGVGSLVPKGF 744 +DL +LG+RG G+ +P+GF Sbjct: 717 MKFSDLQHYLGERGRRGNKLPRGF 740 >gi|262376957|ref|ZP_06070183.1| DNA topoisomerase IV, A subunit [Acinetobacter lwoffii SH145] gi|262307995|gb|EEY89132.1| DNA topoisomerase IV, A subunit [Acinetobacter lwoffii SH145] Length = 739 Score = 502 bits (1293), Expect = e-140, Method: Compositional matrix adjust. Identities = 277/731 (37%), Positives = 438/731 (59%), Gaps = 19/731 (2%) Query: 27 EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86 E+ YL YA+ I +RA+P + DG KPV RRI++AMSE+GL + + KKSAR VG+V+GK Sbjct: 19 EQAYLNYAMYVIMDRALPHISDGLKPVQRRIVYAMSELGLKWTSKPKKSARTVGDVLGKY 78 Query: 87 HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQVAELILQ 145 HPHGD + Y+++V +AQPF RYP I GQGN+G+ D S AA RYTEA+++Q +EL+L Sbjct: 79 HPHGDSACYEAMVLMAQPFSYRYPFIEGQGNWGSPDDPKSFAAMRYTEAKLSQYSELLLS 138 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 + + +++D ++ EPV P++ PN+L NGT+GIAVGMAT IP HN++E+ + +A Sbjct: 139 ELGQGTCEWQDNFDGSMKEPVNLPARVPNILLNGTTGIAVGMATDIPPHNLREVVKGTIA 198 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265 LI NP ++ EK+ EYI PD PT I+ +++ GRG +R+RA + V++ Sbjct: 199 LIRNPNLTDEKIAEYIPAPDLPTKAEIITPPAELLKIQTTGRGSYRMRAVYSVDKNE--- 255 Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES--AEDVRIVLFPKNRSLDPD 323 I++TE+PYQV S++I +IA+ + AK++PL+ D+RDES A R+V+ ++ +D + Sbjct: 256 --IIITELPYQVSGSKIITQIADQMQAKKLPLVSDVRDESDHANPTRLVIVLRSNRIDAE 313 Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383 +M +F +D+E+ + +NMN++ PQV + IL EW+ R+ + RR + + I Sbjct: 314 SVMSHLFATTDLESSYRVNMNMIGADGRPQVKSIRRILLEWIEIRKTTVTRRLQYHLNKI 373 Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLE 443 ++R+ IL GL+IAYLNIDE+I IIR ED+PKPV++ RF++ E Q +AIL L+LR L KLE Sbjct: 374 EKRLHILGGLIIAYLNIDEVIQIIREEDQPKPVLMQRFNIDEIQAEAILELKLRHLAKLE 433 Query: 444 EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVS 503 E +++ E + L A+ I L + + + I E+++ + F RR+ V Sbjct: 434 EMEMRREQEELEAKAAVIREQLANPESLKSLIISELKDDAKKFGDD-----RRSPI--VQ 486 Query: 504 RADKATLQQA-MIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDR 562 RA+ A + + M+ +P+TVV+S GWIR K H VD L+F+ GD + R Sbjct: 487 RAEAAVINETEMLPADPVTVVLSEAGWIRCAKGHEVDAENLNFRAGDQYLSHAQGKSNQR 546 Query: 563 ILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGN 622 + +L G++Y L L S RG GE + + V + ++L S+KG Sbjct: 547 VYVLDDTGRSYALAINTLPSARGLGEPLSSKLSPGSGVGFKQVLVAEDETEILAASNKGY 606 Query: 623 AFIVEESEIIANTRKGKTFLKVS-SEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEM 681 F + ++ + + GK FL +S E M L HVA++ +LLI + ++P + Sbjct: 607 GFKTQAKQLDTSAKAGKAFLNLSEGAEVMNLQPLEDATHVALLSSAGRLLIVDLAELPVL 666 Query: 682 SRGKGVRLQSYKDGG-ISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740 ++GKG +L +DG I + K+ E + + + + +DL ++GKRG G L+ Sbjct: 667 NKGKGNKLIQLEDGDQILSMTLLKLDE-IIQVLAGQQQLKLKGDDLRKYIGKRGAKGQLL 725 Query: 741 PKGFPRSGKFL 751 P+G+ ++ K L Sbjct: 726 PRGYQKANKLL 736 >gi|258545626|ref|ZP_05705860.1| topoisomerase IV subunit A [Cardiobacterium hominis ATCC 15826] gi|258519093|gb|EEV87952.1| topoisomerase IV subunit A [Cardiobacterium hominis ATCC 15826] Length = 749 Score = 502 bits (1292), Expect = e-139, Method: Compositional matrix adjust. Identities = 278/733 (37%), Positives = 443/733 (60%), Gaps = 24/733 (3%) Query: 26 LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85 +E+ YL Y++ I +RA+P + DG KPV RRII+AMSE+GL + KKSAR VG+VIGK Sbjct: 15 VEKAYLDYSMYVILDRALPHIGDGLKPVQRRIIYAMSELGLSHQSKHKKSARTVGDVIGK 74 Query: 86 LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQVAELIL 144 HPHGD + Y+++V +AQ F RYPL+ GQGN+G+ D S AA RYTE+R+T A+ +L Sbjct: 75 YHPHGDSACYEAMVLMAQDFAYRYPLVDGQGNWGSADDPKSFAAMRYTESRLTGYAKTLL 134 Query: 145 QGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAAL 204 +++ V++ ++ EP P++ PN+L NG SGIAVGMAT++ HN+ E+ A Sbjct: 135 AELEQGTVEWVANFDGTLQEPARLPARLPNILLNGGSGIAVGMATNLLPHNLGEVVAACR 194 Query: 205 ALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRG 264 ALI +P ++ + L++YI PDFPTGG +V +RE I YR GRG R+RA W +E+ Sbjct: 195 ALIADPLLTDDALMQYIPAPDFPTGGELVSAREEIAALYRTGRGAVRLRATWHLEDGN-- 252 Query: 265 SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFPKNRSLDP 322 I++ ++PYQV S++ E+IA+ + AK++ LED+RDES + +R+VL P++ +D Sbjct: 253 ---IIIDQLPYQVSGSKVQEQIAKQMQAKKLAWLEDLRDESDHEHPIRLVLVPRSNRVDH 309 Query: 323 DLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQA 382 + LM+ +F +D+E R+ MN++ + PQV L IL+EWL +R E + RR + R+ A Sbjct: 310 ERLMQHLFATTDLEKRYSAQMNMIGLDGRPQVKNLGQILREWLVYREETVRRRLNHRLHA 369 Query: 383 IDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKL 442 ++ R+ IL+GLLIAYLN+DEII IIR ED+P+PV+++ F+L+E Q +AILN RLR L +L Sbjct: 370 VNERLHILQGLLIAYLNLDEIIRIIRTEDEPRPVLMATFALSEAQAEAILNTRLRHLARL 429 Query: 443 EEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEV 502 EE QI++E + L AE++ + LL S ++ IA E+ + + RRT E Sbjct: 430 EEIQIRAEQEALAAEQQHLHELLQSRERLLTLIADELAADAATYGDA-----RRTVIIE- 483 Query: 503 SRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDR 562 A A + + E +T+++S GWIR K H++D +AL +K GD+ + + + Sbjct: 484 REAAVALDETELTPSEAVTLILSKMGWIRGGKGHAIDGAALTYKNGDAYLTQISGRSNQQ 543 Query: 563 ILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGN 622 LL+ +G++YTL L S R +GE + + ++ + I+ A + + + L+ + G Sbjct: 544 ACLLADNGRSYTLALHGLPSARSYGEPLSSSMSIDASAHIIAAAIIEPERRYLIAADNGY 603 Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGDHVAVVGENRKLLIFSIDQIP 679 F++ +E+ + T+ GKT + + ++ + D +A+ E R LI + ++IP Sbjct: 604 GFLIPGAELTSKTKSGKTLITPGGASRAITLQALPDGETDILAISNEGRVALIPA-EEIP 662 Query: 680 EMSRGKG-----VRLQSYKDGGISDVICFKICEGL-TWIDSAGRSYNRSENDLLGWLGKR 733 E+++GKG + ++Y GI + G + S + N+ +L R Sbjct: 663 ELAKGKGSQTLAIAKKTYDADGIRLAHILAVPRGRDITLHSGKQKLTIRANEREHYLTPR 722 Query: 734 GGVGSLVPKGFPR 746 G G+ +PK + R Sbjct: 723 GHKGNWLPKNYRR 735 >gi|171317649|ref|ZP_02906834.1| DNA topoisomerase IV, A subunit [Burkholderia ambifaria MEX-5] gi|171097177|gb|EDT42027.1| DNA topoisomerase IV, A subunit [Burkholderia ambifaria MEX-5] Length = 777 Score = 502 bits (1292), Expect = e-139, Method: Compositional matrix adjust. Identities = 281/706 (39%), Positives = 419/706 (59%), Gaps = 36/706 (5%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 + A++L E+ YL+YA+S +K RA+PD+ DG KPV RRI+ AM+EMGL A KS Sbjct: 16 DADALTLGNYAEQAYLSYAVSVVKSRALPDVCDGQKPVQRRILFAMNEMGLGPDAKPVKS 75 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 AR+VG+V+GK HPHGDQS YD+LVRLAQ F RYPLI GQGNFG+ DGD AAA RYTEAR Sbjct: 76 ARVVGDVLGKYHPHGDQSAYDALVRLAQDFSLRYPLIDGQGNFGSRDGDGAAAMRYTEAR 135 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 +T +++L+L +D+ VDF Y+ EP PS+ P +L NG SGIAVG+AT IPSHN Sbjct: 136 LTPISKLLLDEIDQGTVDFMPNYDGSFEEPKTLPSRMPFVLLNGASGIAVGLATEIPSHN 195 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 ++E+ AA+ALI NP+++ +L+ I GPDFP GG I+ S I +Y GRG +VRAR Sbjct: 196 LREVAAAAVALIRNPKLTHAELMNLIPGPDFPGGGQIISSDTEIAAAYETGRGSLKVRAR 255 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAK------------------RIPL 297 W +EE+ RG W +VVTE+P +++E+I EL K + L Sbjct: 256 WKIEELARGQWQLVVTELPPSTSGQKVLEEIEELTNPKLKLGKKTLTPEQLNTKKAMLDL 315 Query: 298 LEDIRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVM 355 L+ +RDES ++ VR+V PK+R++D + ++ + +E+ LN+ ++ P Sbjct: 316 LDAVRDESGKEAAVRLVFEPKSRTIDQTEFVNTLLAYTSLESNATLNLVMIGADGRPGQK 375 Query: 356 PLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP 415 L IL EW+ R+ + RR R+ +D R+ IL+G +I +LNIDE+I IIR+ D+PK Sbjct: 376 GLLTILDEWVKFRQLTMTRRCRHRLAKVDDRIHILEGRMIVFLNIDEVIRIIRDADEPKA 435 Query: 416 VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQI 475 ++S F LT+ Q + IL +RLR L +LE+ +I+ EL+ L EK K++ LL N+ Sbjct: 436 ALMSAFGLTDRQAEDILEIRLRQLARLEKIKIEKELEALRDEKAKLEELLA------NES 489 Query: 476 ACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKS 535 A + +KEI + + G R T + + +AT +A + EP+TVV+S +GW+R+LK Sbjct: 490 AMKRLMIKEIETDAKQYGDDRRTLIQQEK--RATF-EAKVVDEPVTVVVSQKGWVRALKG 546 Query: 536 HSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLID 595 H +D + FK GD L A T DR++ + G+ Y++ L GRG G + LI+ Sbjct: 547 HGLDPAGFTFKAGDHLYAAFQCRTPDRLIAWGSSGRVYSVDVSVLPGGRGDGVPVTSLIE 606 Query: 596 LNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV-- 653 L ++ + +LL+ SS G F+ + ++++ + GK F+ + + V Sbjct: 607 LESGSHLMHYYAAPVDQQLLLASSNGFGFLAKVGDMVSRVKAGKAFMTIDTGVAAGAVPL 666 Query: 654 ----VKVTGDHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKD 694 V VA + +LL+F +D++ +S G+GV L + D Sbjct: 667 APMPVLPNATQVACLSSGGRLLVFGMDEMKTLSGGGRGVILMALDD 712 >gi|119505503|ref|ZP_01627575.1| DNA topoisomerase IV subunit A [marine gamma proteobacterium HTCC2080] gi|119458612|gb|EAW39715.1| DNA topoisomerase IV subunit A [marine gamma proteobacterium HTCC2080] Length = 752 Score = 501 bits (1291), Expect = e-139, Method: Compositional matrix adjust. Identities = 281/751 (37%), Positives = 436/751 (58%), Gaps = 46/751 (6%) Query: 18 KAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSAR 77 + +SLR E+ YL Y++ I +RA+P++ DG KPV RRI++AMSE+GL A FKKSAR Sbjct: 12 ETLSLRDYAEKAYLDYSMYVILDRALPNIGDGLKPVQRRIVYAMSELGLKATAKFKKSAR 71 Query: 78 IVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARM 136 VG+VIGK HPHGD + Y+++V +AQ F RYPLI GQGN+G+ D S AA RYTE+R+ Sbjct: 72 TVGDVIGKFHPHGDSAAYEAMVLMAQDFSYRYPLIDGQGNWGSPDDPKSFAAMRYTESRL 131 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 T+ A+++L + + VD++ ++ EP+V P++ PNLL NGT+GIAVGMAT IP HN+ Sbjct: 132 TRYADILLAELGQGTVDWQPNFDGTLDEPMVLPARVPNLLLNGTTGIAVGMATDIPPHNL 191 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 +E+ +A + L++ P +E L + I GPDFPT I+ R I Y+ GRG ++RA W Sbjct: 192 REVVKATIRLLEAPRAGLEDLSDIIQGPDFPTDAEIITPRSEISAMYKTGRGSLKMRAAW 251 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLF 314 VE+ +VV +P+QV S+++E+IA + A+++P++ D+RDES + R V+ Sbjct: 252 RVED-----GAVVVHALPHQVSGSKVLEQIAAQMQARKLPMVADLRDESDHEHPTRFVVV 306 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 P++ +D D LM +F +D+E + +N+NV+ + P V L IL EWL RR + R Sbjct: 307 PRSNRVDLDGLMSHLFATTDLERNYRVNLNVIGIDGRPGVKSLATILLEWLEFRRTTVRR 366 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNL 434 R R++ + +R+ IL+G L+AYLNIDE+I I+R ED+P+P +++RF LTE Q DAIL+L Sbjct: 367 RLEHRLEKVLKRLHILEGYLVAYLNIDEVIRIVREEDEPRPALMARFQLTELQADAILDL 426 Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG- 493 +LR+L KLEE +I+ E + L E++ + L S + I KE+ S + D G Sbjct: 427 KLRNLAKLEEMKIRGEQNELAEERDDLQKTLGSDARLKTLIK------KELESVANDHGD 480 Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKI 553 RR+ E A KA + + +P+T+V+S +GWIR+ K H +D AL +K GD K+ Sbjct: 481 DRRSPIVEREEA-KAFSELELTTADPLTIVLSEKGWIRAAKGHDIDPEALSYKSGDGFKL 539 Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613 A + ++ + G++Y+LP+ L S RG GE + I+ + Sbjct: 540 AAKGRSNQPTVVFDSTGRSYSLPSHQLPSARGQGEPLTGRINPPSGATFEALLTGVDADR 599 Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFL------------KVSSEEKMKLVVKVTGDHV 661 L+ S G F+ +++ + GK L V S ++ +V VT + Sbjct: 600 YLLASDAGYGFVGRFADLQTKNKAGKAVLSLPKGAGVLQPGSVGSADETAMVAAVTNEG- 658 Query: 662 AVVGENRKLLIFSIDQIPEMSRGKG--------VRLQSYKDGGISDVICFKICEGLTWID 713 +LL+F + +PE+SRGKG R + ++ + V+ + + I Sbjct: 659 -------RLLVFPLTDLPELSRGKGNKIIGIPTPRAAAREELMVGAVVL--VPGNVLQIT 709 Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGF 744 + R +DL + G+RG G+ +P GF Sbjct: 710 AGKRHLKLKFSDLEHYRGERGRRGNKLPNGF 740 >gi|254230595|ref|ZP_04923957.1| DNA topoisomerase IV, A subunit [Vibrio sp. Ex25] gi|262395285|ref|YP_003287139.1| topoisomerase IV subunit A [Vibrio sp. Ex25] gi|151936882|gb|EDN55778.1| DNA topoisomerase IV, A subunit [Vibrio sp. Ex25] gi|262338879|gb|ACY52674.1| topoisomerase IV subunit A [Vibrio sp. Ex25] Length = 761 Score = 501 bits (1291), Expect = e-139, Method: Compositional matrix adjust. Identities = 266/687 (38%), Positives = 425/687 (61%), Gaps = 17/687 (2%) Query: 9 SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68 S + + V+ + +R E+ YL Y++ I +RA+P + DG KPV RRII+AMSE+GL Sbjct: 2 STEITYDGVEQLPMRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61 Query: 69 GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAA 127 A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S A Sbjct: 62 SAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFA 121 Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187 A RYTEA++++ AE++L + + V+++ ++ EP + P++ P++L NG +GIAVGM Sbjct: 122 AMRYTEAKLSKFAEVLLGELGQGTVEWQPNFDGTMKEPQMLPARLPHILLNGVTGIAVGM 181 Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247 AT IP HNV+EI +A + LIDNP+ + +++Y+ GPD+PT I+ + I + YR GR Sbjct: 182 ATDIPPHNVREIADATIHLIDNPKAELPDVMQYVKGPDYPTEAEIISPQADIEKIYRNGR 241 Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307 G ++RA W E GS IV+T +P+QV ++L+E+IA + AK++P+++D+RDES Sbjct: 242 GSIKMRAVWHKE----GS-DIVITSLPHQVSGAKLLEQIANQMRAKKLPMVDDLRDESDH 296 Query: 308 D--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365 + RIV+ PK+ +D DLLM +F +D+E + +N+N++ + PQV L IL EW+ Sbjct: 297 ENPTRIVVVPKSNRVDCDLLMNHLFASTDLERSYRVNLNMIGLDNRPQVKGLVQILSEWI 356 Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425 RR + RR R+ + R+ IL+GLL+AYLN+DE+I IIR ED PK V+++RF +T+ Sbjct: 357 EFRRTTVRRRLQHRLDKVMARLHILEGLLVAYLNLDEVIEIIRTEDDPKAVLMARFGITD 416 Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485 Q DAIL+ +LR L KLEE +I+ E D L E+EK++ LL S ++ + EI+ E Sbjct: 417 IQADAILDTKLRHLAKLEEMKIRGEQDELEKEREKLEQLLGSERRLNTLLKKEIKADAEK 476 Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545 + RR+ E + A KA ++ ++ EPITVV+S +GWIR K H VD L++ Sbjct: 477 YGDD-----RRSPLVERAEA-KALTERDLVPSEPITVVLSEKGWIRHAKGHDVDAEGLNY 530 Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605 K GD + + L +DG++Y+L + +L S R GE I +++ I Sbjct: 531 KSGDKYLAHARGKSNQPAVFLGSDGRSYSLESHSLPSARSQGEPITGRLNITAGSSIRQV 590 Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVA 662 + + LV S G F+ + +++++ R GK + + + ++ K + + D + Sbjct: 591 IMSEEDQLWLVGSDAGYGFVCKGADLLSKNRSGKALVTLPANSEVMTPKAIEDLDSDEIL 650 Query: 663 VVGENRKLLIFSIDQIPEMSRGKGVRL 689 + ++L+F I +P++++GKG ++ Sbjct: 651 AITNQGRMLLFPIKDLPQLAKGKGNKI 677 >gi|47779375|gb|AAT38604.1| predicted topoisomerase IV subunit A [uncultured gamma proteobacterium eBACHOT4E07] Length = 748 Score = 501 bits (1291), Expect = e-139, Method: Compositional matrix adjust. Identities = 257/676 (38%), Positives = 426/676 (63%), Gaps = 16/676 (2%) Query: 19 AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78 ++SL+ EE YL YA+ I +RA+P++ DG KPV RRI++AMSE+GLD G+ +KKSAR Sbjct: 8 SISLKKYAEESYLNYAMYVILDRALPNVGDGLKPVQRRILYAMSELGLDAGSKYKKSART 67 Query: 79 VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMT 137 VG+VIGK HPHGD + Y+++V +AQ F +YPL+ GQGN+G+ D S AA RYTE+++T Sbjct: 68 VGDVIGKFHPHGDSAAYEAMVLMAQNFSFKYPLVDGQGNWGSQDDPKSFAAMRYTESKLT 127 Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197 A L++ + VD++ ++ EPV+FP+K P +L NGTSGIAVGMAT IPSHN+ Sbjct: 128 NFANLLISELKSGTVDWQPNFDGSLLEPVIFPAKIPMILLNGTSGIAVGMATDIPSHNIN 187 Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257 E+ +A + +++ P+ ++ LL+ I GPDF IV S E + E Y GRGGF+++A+W Sbjct: 188 EVIDATVKILEKPKSDLKDLLKIIKGPDFSNNASIVASPEELEEMYSSGRGGFKIQAQWM 247 Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFP 315 ++ I++ +PYQ S+++E+IAE +I K++P++ D+ DE + +R+V+ Sbjct: 248 QDKN-----QIIINALPYQASGSKILEQIAEQMINKKLPMVVDLADEGDHEDPIRLVITL 302 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 K+ ++ + +M ++ +D++ + +NMN++S+ P+V L +LKEW+ R++ L R+ Sbjct: 303 KSNRVNAEDVMNHLYASTDLQKNYRVNMNLISLKGGPKVFSLVDLLKEWVIFRKDTLKRK 362 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435 R+ ++ R+ IL+GLL ++++D++I IIRN D+PK ++ F L+E Q +AIL +R Sbjct: 363 LEHRLDQVNDRLHILEGLLTIFVDLDKVIKIIRNSDEPKKELIKAFKLSEIQANAILEIR 422 Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495 LR L KLE+ +I++E + L+ E++ I+ +L S + I E+ E+KE+F G Sbjct: 423 LRQLAKLEQLKIENERNELVNERDDIEKILKSKSRLKTLIKNELNEIKELF------GEE 476 Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555 R + S K ++ I EPITVV+S GW+RS K H +D + L ++ DSL+ Sbjct: 477 RKSPIINSTNAKIFSEEETIVTEPITVVLSKAGWVRSAKGHEIDPNTLSYRGDDSLQDFA 536 Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615 + + L ++GKAY++ + +L S RG GE I ++ + +++ + K L Sbjct: 537 RGRSNQLAIFLDSNGKAYSIQSHSLPSARGMGEPITGRLNADSGVQFISSVIGVEGNKFL 596 Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--KLVVKVTGDHVAVVGENRKLLIF 673 ++++ G +I E +I+N + G+ F+K+ KM + VK H+A V KLLIF Sbjct: 597 IMNTAGYGYISEYQNMISNKKTGRAFMKLPDNAKMLKAIPVKDNHTHIAAVSNIGKLLIF 656 Query: 674 SIDQIPEMSRGKGVRL 689 +I+++P + +GKG ++ Sbjct: 657 NIEELPILGKGKGNKI 672 >gi|126440445|ref|YP_001058187.1| DNA topoisomerase IV subunit A [Burkholderia pseudomallei 668] gi|126219938|gb|ABN83444.1| DNA topoisomerase IV, A subunit [Burkholderia pseudomallei 668] Length = 772 Score = 501 bits (1291), Expect = e-139, Method: Compositional matrix adjust. Identities = 288/729 (39%), Positives = 425/729 (58%), Gaps = 34/729 (4%) Query: 23 RFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEV 82 R+A E +YL YA+S +K RA+PD+ DG KPV RRI++AM+EMGL A KSAR+VG+V Sbjct: 24 RYA-ERQYLDYAVSVVKGRALPDVSDGQKPVQRRILYAMNEMGLGDNAKPVKSARVVGDV 82 Query: 83 IGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAEL 142 +GK HPHGDQS YD+LVRLAQ F RYPLI GQGNFG+ DGD AAA RYTEAR+T +A+L Sbjct: 83 LGKYHPHGDQSAYDALVRLAQDFSMRYPLIDGQGNFGSRDGDGAAAMRYTEARLTPIAKL 142 Query: 143 ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEA 202 +L +DE V+F Y+ EP + P++ P +L NG SGIAVG+AT IPSHN++E+ A Sbjct: 143 LLDEIDEGTVEFMPNYDGSFDEPKLLPARLPFVLLNGASGIAVGLATEIPSHNLREVAAA 202 Query: 203 ALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVG 262 A+ALI +P + +L+ + GPDFP GG I+ S I +Y GRG +VRARW +E++ Sbjct: 203 AVALIRHPALPHAELMRLVPGPDFPGGGQIISSDAEISAAYETGRGSLKVRARWKIEDLA 262 Query: 263 RGSWCIVVTEIPYQVQKSRLIEKIAELIIAK------------------RIPLLEDIRDE 304 RG W +VVTE+P +++E+I EL K + LL+ +RDE Sbjct: 263 RGQWQLVVTELPPNTSCQKVLEEIEELTNPKLKAGKKTLTQEQINTKKTLLDLLDAVRDE 322 Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362 S +D VR+V PK R++D + S+ + +E+ LN+ ++ P L IL Sbjct: 323 SGKDAPVRLVFEPKTRAIDQTEFVNSLLAHTSLESNAALNLVMIGEDGRPAQKGLASILG 382 Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422 EW+ R+ + RR R+ ++ R+ IL+G +I +LNIDE+I IIR D+PK ++S F Sbjct: 383 EWVRFRQATVTRRCRHRLGKVNDRIHILEGRMIVFLNIDEVIRIIREADEPKAALISAFG 442 Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482 LTE Q D IL +RLR L +LE+ +I+ EL+ L AEK K++ LL N+ A + + Sbjct: 443 LTERQADDILEIRLRQLARLEKIKIEKELEELRAEKAKLEELLA------NESAMKRLMI 496 Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542 KEI + + G R T + + +AT +A + EP+TVV+S +GW+R+LK H +D ++ Sbjct: 497 KEIEADAKQYGDERRTLIQQEK--RATF-EAKVVDEPVTVVVSQKGWVRALKGHGLDPAS 553 Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602 FK GD L A T D ++ + G+ Y++ L GRG G + LI+L + Sbjct: 554 FSFKAGDGLYAAFQCRTPDTLIAWGSTGRVYSVAVQVLPGGRGDGVPVTSLIELESGSHL 613 Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD--H 660 + + + LL+ SS G F+ + ++++ + GK+F+ + + V D Sbjct: 614 LHYYAAPAEQPLLLASSNGFGFVAKVGDMVSRVKAGKSFMTIDDGAAPLAPMPVLPDASQ 673 Query: 661 VAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719 VA + +LL+F +D++ +S G+GV L + D + V I + GR Sbjct: 674 VACLSSGGRLLVFGMDEMKTLSGGGRGVILMAL-DAKETLVQALAIDAAGVVLTGTGRGG 732 Query: 720 NRSENDLLG 728 E L G Sbjct: 733 KAQEEALAG 741 >gi|145642079|ref|ZP_01797650.1| DNA topoisomerase IV subunit A [Haemophilus influenzae R3021] gi|145273259|gb|EDK13134.1| DNA topoisomerase IV subunit A [Haemophilus influenzae 22.4-21] Length = 747 Score = 501 bits (1291), Expect = e-139, Method: Compositional matrix adjust. Identities = 276/742 (37%), Positives = 439/742 (59%), Gaps = 24/742 (3%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 E ++ + LR E+ YL Y++ I +RA+P + DG KPV RRI++AMSE+GL+ A +KK Sbjct: 7 EGIEQMPLRTFTEKAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKYKK 66 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTE 133 SAR VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S AA RYTE Sbjct: 67 SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 126 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 +R+++++E++L + + VD++ ++ +EP P++ P++L NGT+GIAVGMAT IP Sbjct: 127 SRLSKISEILLSELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATDIPP 186 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ EI +A + L+DNP+ ++ +LE + GPDFPT I+ + I + Y GRG ++R Sbjct: 187 HNINEIADATVMLLDNPKAGLDDVLEIVQGPDFPTEAEIISPKAEIRKIYEQGRGSIKMR 246 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRI 311 A W E+ I+++ +P+Q S++I +IA+ + AK++P+LEDIRDE+ + +RI Sbjct: 247 ATWKKED-----GEIIISALPHQASPSKVIAQIADQMTAKKLPMLEDIRDEADHENPIRI 301 Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371 VL P++ +D D LM +F +D+E + +NMN++ + P V L IL EWL RR Sbjct: 302 VLVPRSNRVDTDALMAHLFATTDLEKSYRVNMNMIGLDHKPAVKGLLEILNEWLTFRRTT 361 Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431 + RR +R+ + R+ IL+GL+IA+LNIDE+I IIRNED PK +++RF+L++ Q DAI Sbjct: 362 VTRRLQYRLDKVLSRLHILEGLMIAFLNIDEVIEIIRNEDDPKTELMARFNLSDEQADAI 421 Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491 LNLRLR L KLEE Q+K+E D L E+ ++++L S ++ I EI+E + ++ Sbjct: 422 LNLRLRHLAKLEENQLKAEQDELEKERLNLEAILGSERRLNTLIKKEIQEDAKKYASP-- 479 Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551 R + E A K + M EP+TV++S GW+R K H +D +L++K GDS Sbjct: 480 ---RMSQLVEREEA-KMISESEMTPAEPVTVILSEMGWVRCAKGHDIDPKSLNYKAGDSY 535 Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611 + + ++ + + G++Y L +L S R GE + ++L I + Sbjct: 536 RAHACGKSNQAVVFIDSTGRSYALDPLSLPSARSQGEPLTGKLNLPTGATIEYVVMAGEQ 595 Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVAVVGENR 668 +LL+ S G FI + ++IA + GK + + K+ K ++ T +A+ R Sbjct: 596 QELLMASDAGYGFICKFEDLIARNKAGKALISLPENAKVLKPKTLINSTALVIAITSAGR 655 Query: 669 KLLIFSIDQIPEMSRGKGVRLQSYKDGGISD--VICFKIC----EGLTWIDSAGRSYNRS 722 +LIF +P +S+GKG ++ + D + K+ + S R Sbjct: 656 -MLIFPAQDLPVLSKGKGNKIITIPAANAKDRSELLIKLLLISDQASLEFHSGKRKIVLK 714 Query: 723 ENDLLGWLGKRGGVGSLVPKGF 744 DL + +RG GS +P+G Sbjct: 715 PEDLQKFRAERGRKGSTLPRGL 736 >gi|296159126|ref|ZP_06841953.1| DNA topoisomerase IV, A subunit [Burkholderia sp. Ch1-1] gi|295890687|gb|EFG70478.1| DNA topoisomerase IV, A subunit [Burkholderia sp. Ch1-1] Length = 774 Score = 501 bits (1291), Expect = e-139, Method: Compositional matrix adjust. Identities = 275/693 (39%), Positives = 420/693 (60%), Gaps = 36/693 (5%) Query: 27 EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86 E YL YA+S +K RA+PD+ DG KPV RRI+ AM++MGL A KSAR+VG+V+GK Sbjct: 28 ERAYLDYAVSVVKGRALPDVCDGQKPVQRRILFAMNDMGLSDNAKPVKSARVVGDVLGKY 87 Query: 87 HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQG 146 HPHGDQS YD+LVRLAQ F RYPLI GQGNFG+ DGD AAA RYTEAR+T +A+L+L Sbjct: 88 HPHGDQSAYDALVRLAQDFSMRYPLIDGQGNFGSRDGDGAAAMRYTEARLTPIAKLLLDE 147 Query: 147 VDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALAL 206 +++ VDF Y+ E EP + P++ P +L NG SGIAVG+AT IPSHN++E+ AA+A+ Sbjct: 148 INQGTVDFMKNYDGEFDEPRLLPARLPFVLLNGASGIAVGLATEIPSHNLREVAAAAVAM 207 Query: 207 IDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSW 266 I NP++ +L++YI GPDFP GG I+ S I +Y GRG +VRARW +EE+ RG W Sbjct: 208 IRNPKLQHAELMQYIPGPDFPGGGQIISSEAEISAAYESGRGSLKVRARWKIEELARGQW 267 Query: 267 CIVVTEIPYQVQKSRLIEKIAE-----LIIAKR-------------IPLLEDIRDESAED 308 +V+TE+P +++E+I E + + K+ + LL+ +RDES +D Sbjct: 268 QLVITELPPSTAAQKVLEEIEEQTNPKIKLGKKTLTPEQLQTKQTMLALLDAVRDESGKD 327 Query: 309 --VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366 VR+V PK+ +D + ++ + +E+ LN+ ++ P+ L IL EW+A Sbjct: 328 APVRLVFEPKSSRIDQTDFVNTLLAHTSLESNASLNLVMVGGDGRPRQKGLSEILHEWIA 387 Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426 R + RR+ R+ +D R+ IL+G +I +LNIDE+I IIR D+PK +++ F L++ Sbjct: 388 FRFATVTRRTRHRLSKVDDRIHILEGRMIVFLNIDEVIRIIRESDEPKVALMAAFGLSDR 447 Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486 Q + IL +RLR L +LE+ +I+ EL L EK +++ LL S + A + +KEI Sbjct: 448 QAEDILEIRLRQLARLEKIKIEKELAELKDEKARLEELLGS------ESAMKRLLIKEIE 501 Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546 + G R T + + +AT +A + EP+TVV+S +GW+R+LK H +D + FK Sbjct: 502 GDAKQYGDERRTLIQQEK--RATF-EARVVDEPVTVVVSQKGWVRALKGHGLDAAGFTFK 558 Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606 GD L A T D ++ ++G+ Y++ L GRG G + LI+L ++ + Sbjct: 559 AGDGLYAAFQCRTPDTLVAWGSNGRVYSVAVAMLPGGRGDGVPVTSLIELESGSHLMHYY 618 Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK----MKLVVKVTGDHVA 662 + LL+ SS G FI + ++++ + GK+F+ + + + M ++ T H+A Sbjct: 619 AASADQALLLASSNGFGFIAKVGDMVSRVKAGKSFMTIDAGAQPLAPMPMLPDAT--HIA 676 Query: 663 VVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKD 694 + N +LL+F +D++ +S G+GV L + D Sbjct: 677 CLSSNGRLLVFGLDEMKTLSGGGRGVTLMALDD 709 >gi|113868626|ref|YP_727115.1| DNA topoisomerase IV subunit A [Ralstonia eutropha H16] gi|113527402|emb|CAJ93747.1| Topoisomerase IV subunit A [Ralstonia eutropha H16] Length = 780 Score = 501 bits (1291), Expect = e-139, Method: Compositional matrix adjust. Identities = 275/700 (39%), Positives = 411/700 (58%), Gaps = 30/700 (4%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 EE +++L E YL YA+S +K RA+P++ DG KPV RRI+ AM EMGL A Sbjct: 11 EEPADSLTLARYAERAYLDYAVSVVKGRALPEVADGQKPVQRRILFAMHEMGLRADAKPV 70 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSAR+VG+V+GK HPHGDQS YD+LVRLAQ F RYPLI GQGNFG+ DGD AAA RYTE Sbjct: 71 KSARVVGDVLGKFHPHGDQSAYDALVRLAQDFSLRYPLIDGQGNFGSRDGDGAAAMRYTE 130 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 AR+T ++ L+L +DE VDF Y+ EP + P++ P +L NG SGIAVGMAT IP Sbjct: 131 ARLTPISRLLLDEIDEGTVDFAPNYDGSMQEPRLLPARLPFVLLNGASGIAVGMATEIPP 190 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN++E+ A +A+I NP I++ +LL + GPD+P GG I+ I + Y GRG +VR Sbjct: 191 HNLREVAAATVAMIRNPNITLAELLALMPGPDYPGGGQIISPASDIAQIYEGGRGSLKVR 250 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAEL------------------IIAKRI 295 ARW +EE+ RG W +VVTE+P +++E+I E+ + A + Sbjct: 251 ARWTIEEMARGQWQLVVTELPPNTSAQKVLEEIEEITNPKIKTGKKALTQDQQQLKATVL 310 Query: 296 PLLEDIRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQ 353 +L+ +RDES +D VR+V PK++++ + ++ + +E+ P+N+ ++ P+ Sbjct: 311 AVLDAVRDESGKDAPVRLVFEPKSKNVGQQEFIHTLLAHTSLESGAPINLVMIGTDGRPR 370 Query: 354 VMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP 413 L IL EW+A R + + RR+ R+ ++ R+ IL+G ++ LNIDE+I IIR D+P Sbjct: 371 QKGLREILSEWIAFRFDTVTRRTRHRLGKVEDRIHILEGRMLVLLNIDEVIRIIRESDEP 430 Query: 414 KPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWN 473 KP ++ F L++ Q + IL +RLR L +LE +I+ EL L E+ +D LL S Sbjct: 431 KPALIEAFGLSDRQAEDILEIRLRQLARLEAIRIEKELKELREEQADLDVLLKSETMMRR 490 Query: 474 QIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL 533 +I EI + +S D RRT E RA + + EP+TVV+S +GW+R+ Sbjct: 491 RIIKEIETDAKQYSPE-DKDPRRTLIQEERRA----AAEVRVIDEPVTVVMSQKGWVRTR 545 Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593 + H D FK GD+L T D +L+ T+G+ Y++P +L GRG G I L Sbjct: 546 QGHGHDAQQFTFKAGDALYGTFECRTVDVLLVFGTNGRVYSVPVASLPGGRGDGVPITTL 605 Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653 I+L + F + ++L+ ++ GN F + ++I+ + GK+FL + + L Sbjct: 606 IELQSGSQVAHTFAGSAEQRMLIATAGGNGFQTKVGDMISRQKGGKSFLTLDDGD-TPLA 664 Query: 654 VKVTGD---HVAVVGENRKLLIFSIDQIPEMSR-GKGVRL 689 GD HVA + N +LL+ ++D++ +S G+GV L Sbjct: 665 PAPIGDEATHVACLSGNGRLLLVALDEVKVLSAGGRGVIL 704 >gi|77456731|ref|YP_346236.1| DNA topoisomerase IV subunit A [Pseudomonas fluorescens Pf0-1] gi|77380734|gb|ABA72247.1| topoisomerase IV subunit A [Pseudomonas fluorescens Pf0-1] Length = 754 Score = 501 bits (1291), Expect = e-139, Method: Compositional matrix adjust. Identities = 277/764 (36%), Positives = 451/764 (59%), Gaps = 33/764 (4%) Query: 4 DNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63 DN+++S VE SL E YL Y++ I +RA+P + DG KPV RRI++AMSE Sbjct: 3 DNLADSLDGVERR----SLADFTENAYLNYSMYVIMDRALPHIGDGLKPVQRRIVYAMSE 58 Query: 64 MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123 +GLD + KKSAR VG+V+GK HPHGD + Y+++V +AQPF RY L+ GQGN+G D Sbjct: 59 LGLDADSKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPDD 118 Query: 124 -DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182 S AA RYTEAR+++ +E++L + + D+ ++ EP+V P++ PN+L NGT+G Sbjct: 119 PKSFAAMRYTEARLSRYSEVLLSELGQGTADWGPNFDGTLQEPLVLPARLPNILLNGTTG 178 Query: 183 IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242 IAVGMAT +P HN++E+ A + L+D P+ ++E+L E+I GPD+PT I+ R +++ Sbjct: 179 IAVGMATDVPPHNLREVATACVRLLDEPKATVEQLCEHIQGPDYPTEAEIITPRADLLKM 238 Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAK--RIPLLED 300 Y G+G R+RA + VE+ I+VT +P+QV ++++E+IA L+ AK + P + D Sbjct: 239 YETGKGSVRMRAVYHVED-----GDIIVTALPHQVSGAKVLEQIAALMQAKPSKAPQIAD 293 Query: 301 IRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLD 358 +RDES + RIV+ P N +D + LM+ +F +++E+ + +N+N++ + PQ+ L Sbjct: 294 LRDESDHENPCRIVIIPVNSRVDHEALMQHLFASTELESTYRVNVNIIGLDGKPQLKNLR 353 Query: 359 GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV 418 +L EWL R + RR FR+ ++RR+ +L GLLIAYLN+DE+I IIR E+ PK ++ Sbjct: 354 ALLVEWLEFRVLTVRRRLQFRLDKVERRLHLLDGLLIAYLNLDEVIHIIRTEEHPKAKLI 413 Query: 419 SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE 478 RF+L+E Q D IL+ RLR L +LEE +++ E D LL E+ K+ +LL+S + + E Sbjct: 414 ERFALSEIQADYILDTRLRQLARLEEMKLRDEQDELLKEQAKLQALLSSEAKLKKLVRSE 473 Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV 538 + + E + RR+ E + A KA + ++ E +TVV+S +GWIRS K H + Sbjct: 474 LLKDAETYGDD-----RRSPIVERAEA-KALTEHDLLPNEKVTVVLSEKGWIRSAKGHEI 527 Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNH 598 D + L +K GD K + + +++ + G++Y+L L S RG GE + + Sbjct: 528 DATGLSYKAGDGFKTSAAGRSNQSAVVIDSTGRSYSLATHTLPSARGQGEPLTGRLTPPP 587 Query: 599 NQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVK 655 + + ++ S G F+V+ ++ A + GK L + + K+ + V Sbjct: 588 GATFECVLMPEEDSLYVIASDAGYGFVVKGEDLQAKNKAGKALLSLPNNAKVIAPRPVAD 647 Query: 656 VTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEG 708 + +A V +LLIF I +P++ +GKG ++ + ++ ++D+ + EG Sbjct: 648 REHNWLASVTTEGRLLIFKISDLPQLGKGKGNKIIGISGERVASREEYVTDIAV--LPEG 705 Query: 709 LTWIDSAG-RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751 T + AG R+ + +DL + G+RG G+ +P+GF R L Sbjct: 706 ATLVLQAGKRTLSLKADDLEHYKGERGRRGNKLPRGFQRVDALL 749 >gi|53718707|ref|YP_107693.1| DNA topoisomerase IV subunit A [Burkholderia pseudomallei K96243] gi|76809296|ref|YP_332711.1| DNA topoisomerase IV subunit A [Burkholderia pseudomallei 1710b] gi|126454891|ref|YP_001065425.1| DNA topoisomerase IV subunit A [Burkholderia pseudomallei 1106a] gi|167718667|ref|ZP_02401903.1| DNA topoisomerase IV subunit A [Burkholderia pseudomallei DM98] gi|167737679|ref|ZP_02410453.1| DNA topoisomerase IV subunit A [Burkholderia pseudomallei 14] gi|167821800|ref|ZP_02453480.1| DNA topoisomerase IV subunit A [Burkholderia pseudomallei 91] gi|167844837|ref|ZP_02470345.1| DNA topoisomerase IV subunit A [Burkholderia pseudomallei B7210] gi|167901844|ref|ZP_02489049.1| DNA topoisomerase IV subunit A [Burkholderia pseudomallei NCTC 13177] gi|167910067|ref|ZP_02497158.1| DNA topoisomerase IV subunit A [Burkholderia pseudomallei 112] gi|167918095|ref|ZP_02505186.1| DNA topoisomerase IV subunit A [Burkholderia pseudomallei BCC215] gi|217419881|ref|ZP_03451387.1| DNA topoisomerase IV, A subunit [Burkholderia pseudomallei 576] gi|237811437|ref|YP_002895888.1| DNA topoisomerase IV, A subunit [Burkholderia pseudomallei MSHR346] gi|242315575|ref|ZP_04814591.1| DNA topoisomerase IV, A subunit [Burkholderia pseudomallei 1106b] gi|254181317|ref|ZP_04887914.1| DNA topoisomerase IV, A subunit [Burkholderia pseudomallei 1655] gi|254190688|ref|ZP_04897195.1| DNA topoisomerase IV, A subunit [Burkholderia pseudomallei Pasteur 52237] gi|254195008|ref|ZP_04901437.1| DNA topoisomerase IV, A subunit [Burkholderia pseudomallei S13] gi|254259114|ref|ZP_04950168.1| DNA topoisomerase IV, A subunit [Burkholderia pseudomallei 1710a] gi|254298403|ref|ZP_04965855.1| DNA topoisomerase IV, A subunit [Burkholderia pseudomallei 406e] gi|52209121|emb|CAH35065.1| topoisomerase IV subunit A [Burkholderia pseudomallei K96243] gi|76578749|gb|ABA48224.1| DNA topoisomerase IV, A subunit [Burkholderia pseudomallei 1710b] gi|126228533|gb|ABN92073.1| DNA topoisomerase IV, A subunit [Burkholderia pseudomallei 1106a] gi|157808208|gb|EDO85378.1| DNA topoisomerase IV, A subunit [Burkholderia pseudomallei 406e] gi|157938363|gb|EDO94033.1| DNA topoisomerase IV, A subunit [Burkholderia pseudomallei Pasteur 52237] gi|169651756|gb|EDS84449.1| DNA topoisomerase IV, A subunit [Burkholderia pseudomallei S13] gi|184211855|gb|EDU08898.1| DNA topoisomerase IV, A subunit [Burkholderia pseudomallei 1655] gi|217397185|gb|EEC37201.1| DNA topoisomerase IV, A subunit [Burkholderia pseudomallei 576] gi|237504161|gb|ACQ96479.1| DNA topoisomerase IV, A subunit [Burkholderia pseudomallei MSHR346] gi|242138814|gb|EES25216.1| DNA topoisomerase IV, A subunit [Burkholderia pseudomallei 1106b] gi|254217803|gb|EET07187.1| DNA topoisomerase IV, A subunit [Burkholderia pseudomallei 1710a] Length = 772 Score = 501 bits (1291), Expect = e-139, Method: Compositional matrix adjust. Identities = 288/729 (39%), Positives = 425/729 (58%), Gaps = 34/729 (4%) Query: 23 RFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEV 82 R+A E +YL YA+S +K RA+PD+ DG KPV RRI++AM+EMGL A KSAR+VG+V Sbjct: 24 RYA-ERQYLDYAVSVVKGRALPDVSDGQKPVQRRILYAMNEMGLGDNAKPVKSARVVGDV 82 Query: 83 IGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAEL 142 +GK HPHGDQS YD+LVRLAQ F RYPLI GQGNFG+ DGD AAA RYTEAR+T +A+L Sbjct: 83 LGKYHPHGDQSAYDALVRLAQDFSMRYPLIDGQGNFGSRDGDGAAAMRYTEARLTPIAKL 142 Query: 143 ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEA 202 +L +DE V+F Y+ EP + P++ P +L NG SGIAVG+AT IPSHN++E+ A Sbjct: 143 LLDEIDEGTVEFMPNYDGSFDEPKLLPARLPFVLLNGASGIAVGLATEIPSHNLREVAAA 202 Query: 203 ALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVG 262 A+ALI +P + +L+ + GPDFP GG I+ S I +Y GRG +VRARW +E++ Sbjct: 203 AVALIRHPALPHAELMRLVPGPDFPGGGQIISSDAEISAAYETGRGSLKVRARWKIEDLA 262 Query: 263 RGSWCIVVTEIPYQVQKSRLIEKIAELIIAK------------------RIPLLEDIRDE 304 RG W +VVTE+P +++E+I EL K + LL+ +RDE Sbjct: 263 RGQWQLVVTELPPNTSCQKVLEEIEELTNPKLKAGKKTLTQEQINTKKTLLDLLDAVRDE 322 Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362 S +D VR+V PK R++D + S+ + +E+ LN+ ++ P L IL Sbjct: 323 SGKDAPVRLVFEPKTRAIDQTEFVNSLLAHTSLESNAALNLVMIGEDGRPAQKGLASILG 382 Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422 EW+ R+ + RR R+ ++ R+ IL+G +I +LNIDE+I IIR D+PK ++S F Sbjct: 383 EWVRFRQATVTRRCRHRLGKVNDRIHILEGRMIVFLNIDEVIRIIREADEPKAALISAFG 442 Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482 LTE Q D IL +RLR L +LE+ +I+ EL+ L AEK K++ LL N+ A + + Sbjct: 443 LTERQADDILEIRLRQLARLEKIKIEKELEELRAEKAKLEELLA------NESAMKRLMI 496 Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542 KEI + + G R T + + +AT +A + EP+TVV+S +GW+R+LK H +D ++ Sbjct: 497 KEIEADAKQYGDERRTLIQQEK--RATF-EAKVVDEPVTVVVSQKGWVRALKGHGLDPAS 553 Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602 FK GD L A T D ++ + G+ Y++ L GRG G + LI+L + Sbjct: 554 FSFKAGDGLYAAFQCRTPDTLIAWGSTGRVYSVAVQVLPGGRGDGVPVTSLIELESGSHL 613 Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD--H 660 + + + LL+ SS G F+ + ++++ + GK+F+ + + V D Sbjct: 614 LHYYAAPAEQPLLLASSNGFGFVAKVGDMVSRVKAGKSFMTIDDGAAPLAPMPVLPDASQ 673 Query: 661 VAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719 VA + +LL+F +D++ +S G+GV L + D + V I + GR Sbjct: 674 VACLSSGGRLLVFGMDEMKTLSGGGRGVILMAL-DAKETLVQALAIDAAGVVLTGTGRGG 732 Query: 720 NRSENDLLG 728 E L G Sbjct: 733 KAQEEALAG 741 >gi|167823285|ref|ZP_02454756.1| DNA topoisomerase IV subunit A [Burkholderia pseudomallei 9] gi|226194517|ref|ZP_03790115.1| DNA topoisomerase IV, A subunit [Burkholderia pseudomallei Pakistan 9] gi|225933602|gb|EEH29591.1| DNA topoisomerase IV, A subunit [Burkholderia pseudomallei Pakistan 9] Length = 772 Score = 501 bits (1291), Expect = e-139, Method: Compositional matrix adjust. Identities = 288/729 (39%), Positives = 425/729 (58%), Gaps = 34/729 (4%) Query: 23 RFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEV 82 R+A E +YL YA+S +K RA+PD+ DG KPV RRI++AM+EMGL A KSAR+VG+V Sbjct: 24 RYA-ERQYLDYAVSVVKGRALPDVSDGQKPVQRRILYAMNEMGLGDNAKPVKSARVVGDV 82 Query: 83 IGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAEL 142 +GK HPHGDQS YD+LVRLAQ F RYPLI GQGNFG+ DGD AAA RYTEAR+T +A+L Sbjct: 83 LGKYHPHGDQSAYDALVRLAQDFSMRYPLIDGQGNFGSRDGDGAAAMRYTEARLTPIAKL 142 Query: 143 ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEA 202 +L +DE V+F Y+ EP + P++ P +L NG SGIAVG+AT IPSHN++E+ A Sbjct: 143 LLDEIDEGTVEFMPNYDGSFDEPKLLPARLPFVLLNGASGIAVGLATEIPSHNLREVAAA 202 Query: 203 ALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVG 262 A+ALI +P + +L+ + GPDFP GG I+ S I +Y GRG +VRARW +E++ Sbjct: 203 AVALIRHPALPHAELMRLVPGPDFPGGGQIISSDAEISAAYETGRGSLKVRARWKIEDLA 262 Query: 263 RGSWCIVVTEIPYQVQKSRLIEKIAELIIAK------------------RIPLLEDIRDE 304 RG W +VVTE+P +++E+I EL K + LL+ +RDE Sbjct: 263 RGQWQLVVTELPPNTSCQKVLEEIEELTNPKLKAGKKTLTQEQINTKKTLLDLLDAVRDE 322 Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362 S +D VR+V PK R++D + S+ + +E+ LN+ ++ P L IL Sbjct: 323 SGKDAPVRLVFEPKTRAIDQTEFVNSLLAHTSLESNAALNLVMIGEDGRPAQKGLASILG 382 Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422 EW+ R+ + RR R+ ++ R+ IL+G +I +LNIDE+I IIR D+PK ++S F Sbjct: 383 EWVRFRQATVTRRCRHRLGKVNDRIHILEGRMIVFLNIDEVIRIIREADEPKAALISAFG 442 Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482 LTE Q D IL +RLR L +LE+ +I+ EL+ L AEK K++ LL N+ A + + Sbjct: 443 LTERQADDILEIRLRQLARLEKIKIEKELEELRAEKAKLEELLA------NESAMKRLMI 496 Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542 KEI + + G R T + + +AT +A + EP+TVV+S +GW+R+LK H +D ++ Sbjct: 497 KEIEADAKQYGDERRTLIQQEK--RATF-EAKVVDEPVTVVVSQKGWVRALKGHGLDPAS 553 Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602 FK GD L A T D ++ + G+ Y++ L GRG G + LI+L + Sbjct: 554 FSFKAGDGLYAAFQCRTPDTLIAWGSTGRVYSVAVQVLPGGRGDGVPVTSLIELESGSHL 613 Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD--H 660 + + + LL+ SS G F+ + ++++ + GK+F+ + + V D Sbjct: 614 LHYYAAPAEQPLLLASSNGFGFVAKVGDMVSRVKAGKSFMTIDDGAAPLAPMPVLPDASQ 673 Query: 661 VAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719 VA + +LL+F +D++ +S G+GV L + D + V I + GR Sbjct: 674 VACLSSGGRLLVFGMDEMKTLSGGGRGVILMAL-DAKEALVQALAIDAAGVVLTGTGRGG 732 Query: 720 NRSENDLLG 728 E L G Sbjct: 733 KAQEEALAG 741 >gi|261496791|ref|ZP_05993165.1| DNA topoisomerase IV subunit A [Mannheimia haemolytica serotype A2 str. OVINE] gi|261307538|gb|EEY08867.1| DNA topoisomerase IV subunit A [Mannheimia haemolytica serotype A2 str. OVINE] Length = 748 Score = 501 bits (1290), Expect = e-139, Method: Compositional matrix adjust. Identities = 265/743 (35%), Positives = 446/743 (60%), Gaps = 25/743 (3%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 E ++ + ++ E+ YL Y++ I +RA+P + DG KPV RRII+AMSE+GL+ A +KK Sbjct: 8 EGIEQMPIKRFTEDAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAMSELGLNASAKYKK 67 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTE 133 SAR VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S AA RYTE Sbjct: 68 SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 127 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 ++++++AE++L + + VD++ ++ EP P++ P++L NGT GIAVGMAT IP Sbjct: 128 SKLSKIAEILLGELGQGTVDYQPNFDGSLEEPKYLPARLPHILLNGTMGIAVGMATDIPP 187 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E+ +A++ L+DNP+ +++ +L + GPD+PT I+ + I Y GRG ++R Sbjct: 188 HNINELADASVMLLDNPKATLDDVLSVVQGPDYPTEAEIITPKAEIARMYEQGRGSIKMR 247 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRI 311 A W EE IV++ +P+Q S++IE++A + K++P+++DIRDES + +RI Sbjct: 248 AVWKKEE-----GEIVISALPHQASPSKIIEQVATQMRNKKLPMVDDIRDESDHENPIRI 302 Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371 V+ P++ +D D LM+ +F +D+E + +NMN++ + P V L IL EWL+ RR Sbjct: 303 VIVPRSNRIDFDALMDHLFATTDLEKSYRVNMNMIGLDGKPAVKNLLTILNEWLSFRRTT 362 Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431 + RR ++R+ I R+ IL GL+IA+LNIDE+I IIRNED+PK +++RF+LT+ Q +AI Sbjct: 363 VTRRLNYRLDKILNRLYILDGLMIAFLNIDEVIEIIRNEDEPKAELMARFNLTDVQAEAI 422 Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491 LNLRLR L KLEE+Q+++E L E++++ +L S ++ + I EI+ + F+ Sbjct: 423 LNLRLRHLAKLEEHQLQAEKSELEKERDELQLILGSERRLNSLIKKEIQADAKAFASP-- 480 Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551 RR+ E + + KA + + E +TV++S +GW+R K H +D+ AL ++ GD Sbjct: 481 ---RRSPLVERAES-KAIAESDLTPIEDVTVILSEKGWVRCAKGHDIDVQALSYRAGDDY 536 Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611 + ++ L + G+AY L +L S R GE + I L + + +S Sbjct: 537 LAHARGRSNQPVVFLDSTGRAYALDPTSLPSARSQGEPLTGKITLPEGATVQQVLMANSE 596 Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVAVVGENR 668 K+L+ S G FI ++++ + GK + ++ K+ +L+ + + Sbjct: 597 TKVLMASDSGYGFICTFEDLVSRNKAGKAVISLTENAKVLPPQLLENDENLSLVAMSNVG 656 Query: 669 KLLIFSIDQIPEMSRGKGVRL-----QSYKDGG--ISDVICFKICEGLTWIDSAGRSYNR 721 ++L+F + ++P +S+GKG ++ + K G ++ ++ K L ++ S R Sbjct: 657 RMLVFPVSELPALSKGKGNKIINISAAAAKSGDEYLARLLVIKPTNSLVFV-SGKRKITL 715 Query: 722 SENDLLGWLGKRGGVGSLVPKGF 744 +D+ + G+R GS + +G Sbjct: 716 KPSDIDNYRGERARKGSQLVRGL 738 >gi|53726260|ref|YP_103774.1| DNA topoisomerase IV subunit A [Burkholderia mallei ATCC 23344] gi|67644033|ref|ZP_00442776.1| DNA topoisomerase IV, A subunit [Burkholderia mallei GB8 horse 4] gi|121601347|ref|YP_992041.1| DNA topoisomerase IV subunit A [Burkholderia mallei SAVP1] gi|124385940|ref|YP_001028485.1| DNA topoisomerase IV subunit A [Burkholderia mallei NCTC 10229] gi|126448292|ref|YP_001081616.1| DNA topoisomerase IV subunit A [Burkholderia mallei NCTC 10247] gi|166998423|ref|ZP_02264283.1| DNA topoisomerase IV, A subunit [Burkholderia mallei PRL-20] gi|254175656|ref|ZP_04882316.1| DNA topoisomerase IV, A subunit [Burkholderia mallei ATCC 10399] gi|254202475|ref|ZP_04908838.1| DNA topoisomerase IV, A subunit [Burkholderia mallei FMH] gi|254207810|ref|ZP_04914160.1| DNA topoisomerase IV, A subunit [Burkholderia mallei JHU] gi|254356287|ref|ZP_04972563.1| DNA topoisomerase IV, A subunit [Burkholderia mallei 2002721280] gi|52429683|gb|AAU50276.1| DNA topoisomerase IV, A subunit [Burkholderia mallei ATCC 23344] gi|121230157|gb|ABM52675.1| DNA topoisomerase IV, A subunit [Burkholderia mallei SAVP1] gi|124293960|gb|ABN03229.1| DNA topoisomerase IV, A subunit [Burkholderia mallei NCTC 10229] gi|126241162|gb|ABO04255.1| DNA topoisomerase IV, A subunit [Burkholderia mallei NCTC 10247] gi|147746722|gb|EDK53799.1| DNA topoisomerase IV, A subunit [Burkholderia mallei FMH] gi|147751704|gb|EDK58771.1| DNA topoisomerase IV, A subunit [Burkholderia mallei JHU] gi|148025284|gb|EDK83438.1| DNA topoisomerase IV, A subunit [Burkholderia mallei 2002721280] gi|160696700|gb|EDP86670.1| DNA topoisomerase IV, A subunit [Burkholderia mallei ATCC 10399] gi|238525515|gb|EEP88943.1| DNA topoisomerase IV, A subunit [Burkholderia mallei GB8 horse 4] gi|243065485|gb|EES47671.1| DNA topoisomerase IV, A subunit [Burkholderia mallei PRL-20] Length = 772 Score = 501 bits (1290), Expect = e-139, Method: Compositional matrix adjust. Identities = 288/729 (39%), Positives = 425/729 (58%), Gaps = 34/729 (4%) Query: 23 RFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEV 82 R+A E +YL YA+S +K RA+PD+ DG KPV RRI++AM+EMGL A KSAR+VG+V Sbjct: 24 RYA-ERQYLDYAVSVVKGRALPDVSDGQKPVQRRILYAMNEMGLGDNAKPVKSARVVGDV 82 Query: 83 IGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAEL 142 +GK HPHGDQS YD+LVRLAQ F RYPLI GQGNFG+ DGD AAA RYTEAR+T +A+L Sbjct: 83 LGKYHPHGDQSAYDALVRLAQDFSMRYPLIDGQGNFGSRDGDGAAAMRYTEARLTPIAKL 142 Query: 143 ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEA 202 +L +DE V+F Y+ EP + P++ P +L NG SGIAVG+AT IPSHN++E+ A Sbjct: 143 LLDEIDEGTVEFMPNYDGSFDEPKLLPARLPFVLLNGASGIAVGLATEIPSHNLREVAAA 202 Query: 203 ALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVG 262 A+ALI +P + +L+ + GPDFP GG I+ S I +Y GRG +VRARW +E++ Sbjct: 203 AVALIRHPALPHAELMRLVPGPDFPGGGQIISSDAEISAAYETGRGSLKVRARWKIEDLA 262 Query: 263 RGSWCIVVTEIPYQVQKSRLIEKIAELIIAK------------------RIPLLEDIRDE 304 RG W +VVTE+P +++E+I EL K + LL+ +RDE Sbjct: 263 RGQWQLVVTELPPNTSCQKVLEEIEELTNPKLKAGKKTLTQEQINTKKTLLDLLDAVRDE 322 Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362 S +D VR+V PK R++D + S+ + +E+ LN+ ++ P L IL Sbjct: 323 SGKDAPVRLVFEPKTRAIDQTEFVNSLLAHTSLESNAALNLVMIGEDGRPAQRGLASILG 382 Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422 EW+ R+ + RR R+ ++ R+ IL+G +I +LNIDE+I IIR D+PK ++S F Sbjct: 383 EWVRFRQATVTRRCRHRLGKVNDRIHILEGRMIVFLNIDEVIRIIREADEPKAALISAFG 442 Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482 LTE Q D IL +RLR L +LE+ +I+ EL+ L AEK K++ LL N+ A + + Sbjct: 443 LTERQADDILEIRLRQLARLEKIKIEKELEELRAEKAKLEELLA------NESAMKRLMI 496 Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542 KEI + + G R T + + +AT +A + EP+TVV+S +GW+R+LK H +D ++ Sbjct: 497 KEIEADAKQYGDERRTLIQQEK--RATF-EAKVVDEPVTVVVSQKGWVRALKGHGLDPAS 553 Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602 FK GD L A T D ++ + G+ Y++ L GRG G + LI+L + Sbjct: 554 FSFKAGDGLYAAFQCRTPDTLIAWGSTGRVYSVAVQVLPGGRGDGVPVTSLIELESGSHL 613 Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD--H 660 + + + LL+ SS G F+ + ++++ + GK+F+ + + V D Sbjct: 614 LHYYAAPAEQPLLLASSNGFGFVAKVGDMVSRVKAGKSFMTIDDGAAPLAPMPVLPDASQ 673 Query: 661 VAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719 VA + +LL+F +D++ +S G+GV L + D + V I + GR Sbjct: 674 VACLSSGGRLLVFGMDEMKTLSGGGRGVILMAL-DAKETLVQALAIDAAGVVLTGTGRGG 732 Query: 720 NRSENDLLG 728 E L G Sbjct: 733 KAQEEALAG 741 >gi|145639072|ref|ZP_01794680.1| DNA topoisomerase IV subunit A [Haemophilus influenzae PittII] gi|145272044|gb|EDK11953.1| DNA topoisomerase IV subunit A [Haemophilus influenzae PittII] gi|309751024|gb|ADO81008.1| DNA topoisomerase IV, subunit A [Haemophilus influenzae R2866] Length = 747 Score = 501 bits (1290), Expect = e-139, Method: Compositional matrix adjust. Identities = 278/743 (37%), Positives = 439/743 (59%), Gaps = 26/743 (3%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 E ++ + LR E+ YL Y++ I +RA+P + DG KPV RRI++AMSE+GL+ A +KK Sbjct: 7 EGIEQMPLRTFTEKAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKYKK 66 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTE 133 SAR VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S AA RYTE Sbjct: 67 SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 126 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 +R+++++E++L + + VD++ ++ +EP P++ P++L NGT+GIAVGMAT IP Sbjct: 127 SRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATDIPP 186 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ EI +AA+ L+DNP+ ++ +LE + GPDFPT I+ + I + Y GRG ++R Sbjct: 187 HNINEIADAAVMLLDNPKAKLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRGSIKMR 246 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRI 311 A W E+ I+++ +P+Q S++I +IAE + AK++P+LEDIRDE+ + +RI Sbjct: 247 ATWKKED-----GEIIISALPHQSSPSKVIAQIAEQMTAKKLPMLEDIRDEADHENPIRI 301 Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371 VL P++ +D D LM +F +D+E + +NMN++ + P V L IL EWL RR Sbjct: 302 VLVPRSNRVDTDALMAHLFATTDLEKSYRVNMNMIGLDHKPAVKGLLEILNEWLTFRRTT 361 Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431 + RR +R+ + R+ IL+GL+IA+LNIDE+I IIR+ED PK +++RF+L++ Q DAI Sbjct: 362 VTRRLQYRLDKVLSRLHILEGLMIAFLNIDEVIEIIRHEDDPKAELMARFNLSDEQADAI 421 Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491 LNLRLR L KLEE Q+K+E D L E+ ++++L S ++ I EI+E + ++ S Sbjct: 422 LNLRLRHLAKLEENQLKAEQDELEKERLNLEAILGSERRLNTLIKKEIQEDAKKYASS-- 479 Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551 R + E A K + M EP+TV++S GW+R K H +D +L +K GDS Sbjct: 480 ---RMSQLVEREEA-KMISESDMTPAEPVTVILSEMGWVRCAKGHDIDPKSLSYKAGDSY 535 Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611 + ++ + + G++Y L +L S R GE + ++L I + Sbjct: 536 LAHACGKSNQAVVFIDSTGRSYALDPLSLPSARSQGEPLTGKLNLPTGATIEYVVMASEQ 595 Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVAVVGENR 668 +LL+ S G FI + ++IA + GK + + K+ K ++ T VA+ R Sbjct: 596 QELLMASDAGYGFICKFEDLIARNKTGKALISLPENAKVLKPKTLINSTALVVAITSAGR 655 Query: 669 KLLIFSIDQIPEMSRGKGVRLQSYKDGGISD-------VICFKICEGLTWIDSAGRSYNR 721 +L+F +P +S+GKG ++ + D ++ L + S R Sbjct: 656 -MLLFPAQDLPVLSKGKGNKMITIPAANAKDRSELLTKLLLISDQASLEFY-SGKRKIVL 713 Query: 722 SENDLLGWLGKRGGVGSLVPKGF 744 DL + +RG GS +P+G Sbjct: 714 KPEDLQKFRAERGRKGSTLPRGL 736 >gi|170691863|ref|ZP_02883027.1| DNA topoisomerase IV, A subunit [Burkholderia graminis C4D1M] gi|170143147|gb|EDT11311.1| DNA topoisomerase IV, A subunit [Burkholderia graminis C4D1M] Length = 774 Score = 501 bits (1290), Expect = e-139, Method: Compositional matrix adjust. Identities = 274/693 (39%), Positives = 418/693 (60%), Gaps = 36/693 (5%) Query: 27 EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86 E YL YA+S +K RA+PD+ DG KPV RRI+ AM++MGL A KSAR+VG+V+GK Sbjct: 28 ERAYLDYAVSVVKGRALPDVCDGQKPVQRRILFAMNDMGLSDNAKPVKSARVVGDVLGKY 87 Query: 87 HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQG 146 HPHGDQS YD+LVRLAQ F RYPLI GQGNFG+ DGD AAA RYTEAR+T +A+L+L Sbjct: 88 HPHGDQSAYDALVRLAQDFSMRYPLIDGQGNFGSRDGDGAAAMRYTEARLTPIAKLLLAE 147 Query: 147 VDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALAL 206 +D+ VDF Y+ E EP + P++ P +L NG SGIAVG+AT IPSHN++E+ A +A+ Sbjct: 148 IDQGTVDFMKNYDGEFDEPRLLPARLPFVLLNGASGIAVGLATEIPSHNLREVAAATVAM 207 Query: 207 IDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSW 266 I NP+I+ +L+E++ GPDFP GG I+ S I +Y GRG +VRARW +E++ RG W Sbjct: 208 IRNPKITHAELMEHVPGPDFPGGGQIISSEAEISAAYETGRGSLKVRARWKIEDLARGQW 267 Query: 267 CIVVTEIPYQVQKSRLIEKIAE-----LIIAKR-------------IPLLEDIRDESAED 308 +V+TE+P +++E+I E + + K+ + LL+ +RDES +D Sbjct: 268 QLVITELPPNTAAQKVLEEIEEQTNPKIKLGKKALTPEQLQGKQTMLGLLDAVRDESGKD 327 Query: 309 --VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366 VR+V PK+ +D + ++ + +E+ LNM ++ P+ L IL EW+A Sbjct: 328 APVRLVFEPKSSRIDQTEFVNTLLAHTSLESNASLNMVMVGGDGRPRQKGLSEILHEWIA 387 Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426 R + RR+ R+ +D R+ IL+G +I +LNIDE+I IIR D+PK +++ F L++ Sbjct: 388 FRFATVTRRTRHRLTKVDDRIHILEGRMIVFLNIDEVIRIIRESDEPKVALMAAFGLSDR 447 Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486 Q + IL +RLR L +LE+ +I+ EL L EK K++ LL S + A + +KE+ Sbjct: 448 QAEDILEIRLRQLARLEKIKIEKELAELRDEKAKLEELLGS------ESAMKRLLIKEVE 501 Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546 + + G R T + +K +A + EP+TVV+S +GW+R+LK H +D + FK Sbjct: 502 ADAKQYGDERRTLIQ---QEKRATYEARVVDEPVTVVVSQKGWVRALKGHGLDTAGFTFK 558 Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606 GDSL A T D ++ ++G+ Y++ +L GRG G + LI++ ++ + Sbjct: 559 AGDSLYAAFQCRTPDTLIAWGSNGRVYSVAVASLPGGRGDGVPVTSLIEMESGSHLMHYY 618 Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK----MKLVVKVTGDHVA 662 + LL+ SS G FI + ++++ + GK+F+ + + M ++ T VA Sbjct: 619 AASADQALLLASSNGFGFIAKVGDMVSRVKAGKSFMTIDAGAAPLAPMPMLPDAT--QVA 676 Query: 663 VVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKD 694 + +LL+F ID++ +S G+GV L + D Sbjct: 677 CLSSAGRLLVFGIDEMKTLSGGGRGVTLMALDD 709 >gi|329123548|ref|ZP_08252111.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Haemophilus aegyptius ATCC 11116] gi|327470364|gb|EGF15822.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Haemophilus aegyptius ATCC 11116] Length = 747 Score = 501 bits (1290), Expect = e-139, Method: Compositional matrix adjust. Identities = 279/743 (37%), Positives = 439/743 (59%), Gaps = 26/743 (3%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 E ++ + LR E+ YL Y++ I +RA+P + DG KPV RRI++AMSE+GL+ A +KK Sbjct: 7 EGIEQMPLRTFTEKAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKYKK 66 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTE 133 SAR VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S AA RYTE Sbjct: 67 SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 126 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 +R++++AE++L + + VD++ ++ +EP P++ P++L NGT+GIAVGMAT IP Sbjct: 127 SRLSKIAEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATDIPP 186 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ EI +AA+ L+DNP+ ++ +LE + GPDFPT I+ + I + Y GRG ++R Sbjct: 187 HNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRGSIKMR 246 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRI 311 A W E+ I+++ +P+Q S++I +IA+ + AK++P+LEDIRDE+ + +RI Sbjct: 247 ATWKKED-----GEIIISALPHQSSPSKVIAQIADQMTAKKLPMLEDIRDEADHENPIRI 301 Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371 VL P++ +D D LM +F +D+E + +NMN++ + P V L IL EWL RR Sbjct: 302 VLVPRSNRVDTDALMAHLFATTDLEKSYRVNMNMIGLDHKPAVKGLLEILNEWLTFRRTT 361 Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431 + RR +R+ + R+ IL+GL+IA+LNIDE+I IIR+ED PK +++RF+L++ Q DAI Sbjct: 362 VTRRLQYRLDKVLSRLHILEGLMIAFLNIDEVIEIIRHEDDPKAELMARFNLSDEQADAI 421 Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491 LNLRLR L KLEE Q+K+E D L E+ ++++L S ++ I EI+E + ++ S Sbjct: 422 LNLRLRHLAKLEENQLKAEQDELEKERLNLEAILGSERRLNTLIKKEIQEDAKKYASS-- 479 Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551 R + E A K + M EP+TV++S GW+R K H +D +L +K GDS Sbjct: 480 ---RMSQLVEREEA-KMISESDMTPAEPVTVILSEMGWVRCAKGHDIDPKSLSYKAGDSY 535 Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611 + ++ + + G++Y L +L S R GE + ++L I + Sbjct: 536 LAHACGKSNQAVVFIDSTGRSYALDPLSLPSARSQGEPLTGKLNLPTGATIEYVVMASEQ 595 Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVAVVGENR 668 +LL+ S G FI + ++IA + GK + + K+ K ++ T VA+ R Sbjct: 596 QELLMASDAGYGFICKFEDLIARNKTGKALISLPENAKVLKPKTLINSTALVVAITSAGR 655 Query: 669 KLLIFSIDQIPEMSRGKGVRLQSYKDGGISD-------VICFKICEGLTWIDSAGRSYNR 721 +LIF +P +S+GKG ++ + D ++ L + S R Sbjct: 656 -MLIFPAQDLPVLSKGKGNKMITIPAANAKDRSELLTKLLLISDQASLEFY-SGKRKIVL 713 Query: 722 SENDLLGWLGKRGGVGSLVPKGF 744 DL + +RG GS +P+G Sbjct: 714 KPEDLQKFRAERGRKGSTLPRGL 736 >gi|167893371|ref|ZP_02480773.1| DNA topoisomerase IV subunit A [Burkholderia pseudomallei 7894] Length = 738 Score = 501 bits (1290), Expect = e-139, Method: Compositional matrix adjust. Identities = 280/692 (40%), Positives = 415/692 (59%), Gaps = 33/692 (4%) Query: 23 RFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEV 82 R+A E +YL YA+S +K RA+PD+ DG KPV RRI++AM+EMGL A KSAR+VG+V Sbjct: 24 RYA-ERQYLDYAVSVVKGRALPDVSDGQKPVQRRILYAMNEMGLGDNAKPVKSARVVGDV 82 Query: 83 IGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAEL 142 +GK HPHGDQS YD+LVRLAQ F RYPLI GQGNFG+ DGD AAA RYTEAR+T +A+L Sbjct: 83 LGKYHPHGDQSAYDALVRLAQDFSMRYPLIDGQGNFGSRDGDGAAAMRYTEARLTPIAKL 142 Query: 143 ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEA 202 +L +DE V+F Y+ EP + P++ P +L NG SGIAVG+AT IPSHN++E+ A Sbjct: 143 LLDEIDEGTVEFMPNYDGSFDEPKLLPARLPFVLLNGASGIAVGLATEIPSHNLREVAAA 202 Query: 203 ALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVG 262 A+ALI +P + +L+ + GPDFP GG I+ S I +Y GRG +VRARW +E++ Sbjct: 203 AVALIRHPALPHAELMRLVPGPDFPGGGQIISSDAEISAAYETGRGSLKVRARWKIEDLA 262 Query: 263 RGSWCIVVTEIPYQVQKSRLIEKIAELIIAK------------------RIPLLEDIRDE 304 RG W +VVTE+P +++E+I EL K + LL+ +RDE Sbjct: 263 RGQWQLVVTELPPNTSCQKVLEEIEELTNPKLKAGKKTLTQEQINTKKTLLDLLDAVRDE 322 Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362 S +D VR+V PK R++D + S+ + +E+ LN+ ++ P L IL Sbjct: 323 SGKDAPVRLVFEPKTRAIDQTEFVNSLLAHTSLESNAALNLVMIGEDGRPAQKGLASILG 382 Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422 EW+ R+ + RR R+ ++ R+ IL+G +I +LNIDE+I IIR D+PK ++S F Sbjct: 383 EWVRFRQATVTRRCRHRLGKVNDRIHILEGRMIVFLNIDEVIRIIREADEPKAALISAFG 442 Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482 LTE Q D IL +RLR L +LE+ +I+ EL+ L AEK K++ LL N+ A + + Sbjct: 443 LTERQADDILEIRLRQLARLEKIKIEKELEELRAEKAKLEELLA------NESAMKRLMI 496 Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542 KEI + + G R T + + +AT +A + EP+TVV+S +GW+R+LK H +D ++ Sbjct: 497 KEIEADAKQYGDERRTLIQQEK--RATF-EAKVVDEPVTVVVSQKGWVRALKGHGLDPAS 553 Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602 FK GD L A T D ++ + G+ Y++ L GRG G + LI+L + Sbjct: 554 FSFKAGDGLYAAFQCRTPDTLIAWGSTGRVYSVAVQVLPGGRGDGVPVTSLIELESGSHL 613 Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD--H 660 + + + LL+ SS G F+ + ++++ + GK+F+ + + V D Sbjct: 614 LHYYAAPAEQPLLLASSNGFGFVAKVGDMVSRVKAGKSFMTIDDGAAPLAPMPVLPDASQ 673 Query: 661 VAVVGENRKLLIFSIDQIPEMS-RGKGVRLQS 691 VA + +LL+F +D++ +S G+GV L + Sbjct: 674 VACLSSGGRLLVFGMDEMKTLSGGGRGVILMA 705 >gi|167562026|ref|ZP_02354942.1| DNA topoisomerase IV subunit A [Burkholderia oklahomensis EO147] Length = 776 Score = 501 bits (1290), Expect = e-139, Method: Compositional matrix adjust. Identities = 278/696 (39%), Positives = 412/696 (59%), Gaps = 37/696 (5%) Query: 23 RFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEV 82 R+A E YL+YA+S +K RA+PD+ DG KPV RRI+ AM+EMGL A KSAR+VG+V Sbjct: 24 RYA-ESAYLSYAVSVVKGRALPDVCDGQKPVQRRILFAMNEMGLGNNAKPVKSARVVGDV 82 Query: 83 IGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAEL 142 +GK HPHGDQS YD+LVRLAQ F RYPLI GQGNFG+ DGD AAA RYTEAR+T +A+L Sbjct: 83 LGKYHPHGDQSAYDALVRLAQDFSMRYPLIDGQGNFGSRDGDGAAAMRYTEARLTPIAQL 142 Query: 143 ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEA 202 +L + E VDF Y+ EP + P + P +L NG SGIAVG+AT IPSHN++E+ A Sbjct: 143 LLDEIGEGTVDFMPNYDGSFDEPKLLPGRLPFVLLNGASGIAVGLATEIPSHNLREVAAA 202 Query: 203 ALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVG 262 A+ALI NP++ +L++ + GPDFP GG I+ S I +Y GRG +VRARW +EE+ Sbjct: 203 AVALIRNPKLPHAELMQLVPGPDFPGGGQIISSDAEISAAYETGRGSLKVRARWKIEELA 262 Query: 263 RGSWCIVVTEIPYQVQKSRLIEKIAELIIAK------------------RIPLLEDIRDE 304 RG W +VVTE+P +++E+I EL K + LL+ +RDE Sbjct: 263 RGQWQLVVTELPPNTSGQKVLEEIEELTNPKLKAGKKTLTQEQINTKKSMLDLLDAVRDE 322 Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362 S +D VR+V PK R++D + S+ + +E+ LN+ ++ P L IL Sbjct: 323 SGKDAPVRLVFEPKTRTIDQSDFVNSLLAHTSLESNATLNLVMIGEDGRPAQKGLAAILG 382 Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422 EW+ R+ + RR R+ ++ R+ IL+G +I +LNIDE+I IIR D+PK ++ F Sbjct: 383 EWVRFRQGTVTRRCRHRLGKVNDRIHILEGRMIVFLNIDEVIRIIRESDEPKQALIGAFG 442 Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482 LTE Q + IL +RLR L +LE+ +I+ EL+ L AEK K++ LL N+ A + + Sbjct: 443 LTERQAEDILEIRLRQLARLEKIKIEKELEELRAEKAKLEELLA------NESAMKRLMI 496 Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542 KEI + + G R T + + +AT + ++++ +TVV+S +GW+R+LK H +D ++ Sbjct: 497 KEIEADAKQFGDERRTL--IQQEKRATFETKVVDEP-VTVVVSQKGWVRALKGHGLDPAS 553 Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602 FK GD L A T D ++ + G+ Y++ L GRG G + LI+L + Sbjct: 554 FSFKAGDGLYAAFQCRTPDTLIAWGSTGRVYSVSVQVLPGGRGDGVPVTSLIELESGSHL 613 Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV------SSEEKMKLVVKV 656 + F + LL+ SS G FI + ++++ + GK+F+ + + + V Sbjct: 614 LHYFAAPAEQPLLLASSNGFGFIAKVGDMVSRVKAGKSFMTIDTGVAGGAAPLAPMPVLP 673 Query: 657 TGDHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQS 691 VA + +LL+F ID++ + G+GV L + Sbjct: 674 AASRVACLSSGGRLLVFGIDEMKTLGGGGRGVILMA 709 >gi|268590585|ref|ZP_06124806.1| DNA topoisomerase IV, A subunit [Providencia rettgeri DSM 1131] gi|291313973|gb|EFE54426.1| DNA topoisomerase IV, A subunit [Providencia rettgeri DSM 1131] Length = 751 Score = 501 bits (1290), Expect = e-139, Method: Compositional matrix adjust. Identities = 267/746 (35%), Positives = 443/746 (59%), Gaps = 25/746 (3%) Query: 12 LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71 + + V+ + L E YL Y++ I +RA+P + DG KPV RRI++AMSE+GL A Sbjct: 4 ITHDGVERLPLHAFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLSNTAK 63 Query: 72 FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYR 130 +KKSAR VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S AA R Sbjct: 64 YKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMR 123 Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190 YTE+R+++ AE++L + VD+ ++ +EP + P++ PN+L NGT+GIAVGMAT Sbjct: 124 YTESRLSKYAEILLSELGHGTVDWVPNFDGTLNEPKMLPARLPNILLNGTTGIAVGMATD 183 Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250 IP HN +E+ +A +AL+D P ++++ ++ ++ GPDFPT I+ SR+ I + Y+ GRG Sbjct: 184 IPPHNAREVAQALVALLDKPTLNLDDIMAFVPGPDFPTEAEIISSRDDIRKIYQNGRGSV 243 Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-- 308 R+RA W E+ V+T +P+QV ++++E+IA + AK++P++ED+RDES + Sbjct: 244 RMRAVWEKED-----GNAVITALPHQVSGAKVLEQIASQMRAKKLPMVEDLRDESNHENP 298 Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368 R+V+ P++ +D + +M +F +D+E + +N+N++ + P V L IL EW+A+R Sbjct: 299 TRLVIVPRSNRVDLEQVMTHLFATTDLERSYRVNLNMIGLDNRPAVKGLVEILNEWIAYR 358 Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQV 428 R+ + R + R++ + RR+ IL GLLIAYLNIDE+I IIR ED+PK V++SRF++++ Q Sbjct: 359 RQTVRNRLNHRLEKVLRRLHILDGLLIAYLNIDEVIEIIRTEDEPKAVLMSRFNISDTQA 418 Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488 +AIL L+LR L KLEE +I+ E D L E++ + ++L S ++ I KEI + Sbjct: 419 EAILELKLRHLAKLEEMKIRGEQDELAKERDDLQAILGSERRLNTLIK------KEIQAD 472 Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548 + D G R + KA + ++ EPITVV+S+ GW+RS K H ++ + L++K G Sbjct: 473 AKDYGDDRRSPLHEREEAKAMSEHEILPSEPITVVLSDMGWVRSAKGHDIEPTNLNYKAG 532 Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608 D K A + + L T G++Y++ L S R GE + + L I + Sbjct: 533 DGFKGAARGKSNQAAVFLDTTGRSYSVDPLELPSARSQGEPLTGKLTLPPGATIEHVLMA 592 Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---DHVAVVG 665 K L+ S G FI ++++ + GK + + K+ +++ D + + Sbjct: 593 PDEQKYLMASDAGYGFICTFNDLVTKNKAGKALISLPENAKVLAPIELHNEQEDLLLAIT 652 Query: 666 ENRKLLIFSIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTWIDSAGRS 718 + ++LIF + +P++S+GKG ++ + D ++ ++ + +T + R Sbjct: 653 KAGRMLIFPVADLPQLSKGKGNKIINIAGTQAATGDDLLTWLMILPVGASMT-LHFGKRK 711 Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGF 744 DL + +RG G+ +P+G Sbjct: 712 LKFKAEDLQKYRSERGRKGTSLPRGM 737 >gi|162950918|gb|ABY21498.1| ParC [Shigella boydii] Length = 657 Score = 501 bits (1289), Expect = e-139, Method: Compositional matrix adjust. Identities = 255/662 (38%), Positives = 412/662 (62%), Gaps = 20/662 (3%) Query: 23 RFALEE----RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78 R AL E YL Y++ I +RA+P + DG KPV RRI++AMSE+GL+ A FKKSAR Sbjct: 7 RLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSART 66 Query: 79 VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMT 137 VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S AA RYTE+R++ Sbjct: 67 VGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLS 126 Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197 + +EL+L + + D+ ++ EP + P++ PN+L NGT+GIAVGMAT IP HN++ Sbjct: 127 KYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLR 186 Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257 E+ +AA+ALID P+ ++++LL+ + GPD+PT I+ SR I + Y GRG R+RA W Sbjct: 187 EVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWK 246 Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFP 315 E+ +V++ +P+QV +R++E+IA + K++P+++D+RDES + R+V+ P Sbjct: 247 KED-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVP 301 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 ++ +D D +M +F +D+E + +N+N++ + P V L IL EWL RR+ + RR Sbjct: 302 RSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRR 361 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435 ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF LTE Q +AIL L+ Sbjct: 362 LNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAEAILELK 421 Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495 LR L KLEE +I+ E L E++++ +L S ++ N + E++ + + R Sbjct: 422 LRHLAKLEEMKIRGEQSELEKERDQLQGILVSERKMNNLLKKELQADAQAYGDD-----R 476 Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555 R+ E A KA + M+ EP+T+V+S GW+RS K H +D L++K GDS K A+ Sbjct: 477 RSPLQEREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAV 535 Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615 + ++ + + G++Y + L S RG GE + + L + + KLL Sbjct: 536 KGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMESDDQKLL 595 Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--KLVVKVTGDHVAVVGENRKLLIF 673 + S G F+ ++++A R GK + + + +V++ D + + + ++L+F Sbjct: 596 MASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMF 655 Query: 674 SI 675 + Sbjct: 656 PV 657 >gi|319786528|ref|YP_004146003.1| DNA topoisomerase IV subunit alpha [Pseudoxanthomonas suwonensis 11-1] gi|317465040|gb|ADV26772.1| DNA topoisomerase IV, A subunit [Pseudoxanthomonas suwonensis 11-1] Length = 747 Score = 501 bits (1289), Expect = e-139, Method: Compositional matrix adjust. Identities = 275/735 (37%), Positives = 427/735 (58%), Gaps = 21/735 (2%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 + LR E YL Y++ + +RA+P L DG KPV RRII++MSE+GL+ A KKSAR V Sbjct: 15 IPLREYAERAYLDYSMYVVLDRALPFLGDGLKPVQRRIIYSMSELGLNAAAKPKKSARTV 74 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQ 138 G+VIGK HPHGD + Y++LV +AQPF RYPLI GQGNFG+ D S AA RYTE+++T Sbjct: 75 GDVIGKYHPHGDSACYEALVLMAQPFSYRYPLIEGQGNFGSSDDPKSFAAMRYTESKLTP 134 Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198 +AE++L + + VD+ ++ EP P++ P+LL NGT+GIAVGMAT +P HN+ E Sbjct: 135 IAEVLLGELGQGTVDWVPNFDGTLEEPSWMPARLPHLLLNGTTGIAVGMATDVPPHNLNE 194 Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258 I A + L+D+P+ ++ L E++ GPD+PT I+ S + Y G G R RA W Sbjct: 195 IVSACVRLLDDPDATVADLCEHVRGPDYPTEAEIITSPSDLRAMYENGTGSVRARATWQK 254 Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES--AEDVRIVLFPK 316 E + VVT +PYQV S++IE+IA + K++P LEDIRDES A VR+VL P+ Sbjct: 255 E-----NGNFVVTALPYQVSPSKVIEQIAAQMRTKKLPWLEDIRDESDHANPVRVVLVPR 309 Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376 + +D + LM +F +D+E + +N+NV+ + P V L +L EWL R + + RR Sbjct: 310 SNRVDAEQLMGHLFATTDLEKSYRVNLNVIGLDGKPAVKNLRTLLDEWLTFRTDTVVRRL 369 Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRL 436 R + ++RR+ +L+GLL+A+LN+DE+I IIR ED+P+P +++RF LT Q D IL RL Sbjct: 370 KHRQEKVERRLHLLEGLLVAFLNLDEVIRIIRTEDEPRPALIARFGLTGEQADYILETRL 429 Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496 R L +LEE +I+ E D L E E+I + L+S K + ++ + E+ + + G R Sbjct: 430 RQLARLEEMKIRGEQDELARELERIVATLDS-KARLKKLVKD-----ELLADAKKFGDAR 483 Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALH 556 + + A A + ++ EP+TVV+S +GW+R+ K H VD + L ++EGD+L A+ Sbjct: 484 RSPLVLREAAHAIDETELVPSEPVTVVLSQKGWVRAAKGHDVDAAGLSYREGDALLGAVR 543 Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLV 616 A +T ++ L + G++Y+ PA +L S RG+GE + + ++ + ++ Sbjct: 544 ARSTWQVAFLDSHGRSYSTPAHSLPSARGNGEPLTGRFSPASGASFLALASGENDTRFVL 603 Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVAVVGENRKLLIF 673 SS G F+ + + GK + +++ + +V D + V LL Sbjct: 604 ASSHGYGFVTRFENLTGRNKAGKALINLATGANVLQPAVVGNPETDRIVAVTSAGHLLAI 663 Query: 674 SIDQIPEMSRGKGVRLQSYKDGGI-SDVICFKICEGLT---WIDSAGRSYNRSENDLLGW 729 ++PE+ +GKG +L + ++ + G + S R+ S DL + Sbjct: 664 PAAELPELDKGKGNKLIDIPRAKLGTERVVAVAAVGPAQKLQVYSGQRTMTLSFKDLDTY 723 Query: 730 LGKRGGVGSLVPKGF 744 LG R G L+P+G+ Sbjct: 724 LGARATRGGLLPRGW 738 >gi|167569284|ref|ZP_02362158.1| DNA topoisomerase IV subunit A [Burkholderia oklahomensis C6786] Length = 776 Score = 501 bits (1289), Expect = e-139, Method: Compositional matrix adjust. Identities = 278/696 (39%), Positives = 412/696 (59%), Gaps = 37/696 (5%) Query: 23 RFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEV 82 R+A E YL+YA+S +K RA+PD+ DG KPV RRI+ AM+EMGL A KSAR+VG+V Sbjct: 24 RYA-ESAYLSYAVSVVKGRALPDVCDGQKPVQRRILFAMNEMGLGNNAKPVKSARVVGDV 82 Query: 83 IGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAEL 142 +GK HPHGDQS YD+LVRLAQ F RYPLI GQGNFG+ DGD AAA RYTEAR+T +A+L Sbjct: 83 LGKYHPHGDQSAYDALVRLAQDFSMRYPLIDGQGNFGSRDGDGAAAMRYTEARLTPIAQL 142 Query: 143 ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEA 202 +L + E VDF Y+ EP + P + P +L NG SGIAVG+AT IPSHN++E+ A Sbjct: 143 LLDEIGEGTVDFMPNYDGSFDEPKLLPGRLPFVLLNGASGIAVGLATEIPSHNLREVAAA 202 Query: 203 ALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVG 262 A+ALI NP++ +L++ + GPDFP GG I+ S I +Y GRG +VRARW +EE+ Sbjct: 203 AVALIRNPKLPHAELMQLVPGPDFPGGGQIISSDAEISAAYETGRGSLKVRARWKIEELA 262 Query: 263 RGSWCIVVTEIPYQVQKSRLIEKIAELIIAK------------------RIPLLEDIRDE 304 RG W +VVTE+P +++E+I EL K + LL+ +RDE Sbjct: 263 RGQWQLVVTELPPNTSGQKVLEEIEELTNPKLKAGKKTLTQEQINTKKSMLDLLDAVRDE 322 Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362 S +D VR+V PK R++D + S+ + +E+ LN+ ++ P L IL Sbjct: 323 SGKDAPVRLVFEPKTRTIDQSDFVNSLLAHTSLESNATLNLVMIGEDGRPAQKGLAAILG 382 Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422 EW+ R+ + RR R+ ++ R+ IL+G +I +LNIDE+I IIR D+PK ++ F Sbjct: 383 EWVRFRQGTVTRRCRHRLGKVNDRIHILEGRMIVFLNIDEVIRIIRESDEPKQALIGAFG 442 Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482 LTE Q + IL +RLR L +LE+ +I+ EL+ L AEK K++ LL N+ A + + Sbjct: 443 LTERQAEDILEIRLRQLARLEKIKIEKELEELRAEKAKLEELLA------NESAMKRLMI 496 Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542 KEI + + G R T + + +AT + ++++ +TVV+S +GW+R+LK H +D ++ Sbjct: 497 KEIEADAKQFGDERRTL--IQQEKRATFETKVVDEP-VTVVVSQKGWVRALKGHGLDPAS 553 Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602 FK GD L A T D ++ + G+ Y++ L GRG G + LI+L + Sbjct: 554 FSFKAGDGLYAAFQCRTPDTLIAWGSTGRVYSVSVQVLPGGRGDGVPVTSLIELESGSHL 613 Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV------SSEEKMKLVVKV 656 + F + LL+ SS G FI + ++++ + GK+F+ + + + V Sbjct: 614 LHYFAAPAEQPLLLASSNGFGFIAKVGDMVSRVKAGKSFMTIDTGIAGGAAPLAPMPVLP 673 Query: 657 TGDHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQS 691 VA + +LL+F ID++ + G+GV L + Sbjct: 674 AASRVACLSSGGRLLVFGIDEMKTLGGGGRGVILMA 709 >gi|197286190|ref|YP_002152062.1| DNA topoisomerase IV subunit A [Proteus mirabilis HI4320] gi|227357309|ref|ZP_03841666.1| DNA topoisomerase IV subunit A [Proteus mirabilis ATCC 29906] gi|194683677|emb|CAR44631.1| DNA topoisomerase IV subunit A [Proteus mirabilis HI4320] gi|227162572|gb|EEI47561.1| DNA topoisomerase IV subunit A [Proteus mirabilis ATCC 29906] Length = 985 Score = 501 bits (1289), Expect = e-139, Method: Compositional matrix adjust. Identities = 260/688 (37%), Positives = 420/688 (61%), Gaps = 21/688 (3%) Query: 12 LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71 L + V+ L E YL Y++ I +RA+P + DG KPV RRI++AMSE+GL+ A Sbjct: 4 LTHDGVERQPLHLFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNSSAK 63 Query: 72 FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYR 130 FKKSAR VG+V+GK HPHGD + Y+++V +AQPF RYPLI GQGN+G D S AA R Sbjct: 64 FKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLIDGQGNWGAPDDPKSFAAMR 123 Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190 YTE+R+++ ++++L + VD+ ++ EP + P++ PN+L NGT+GIAVGMAT Sbjct: 124 YTESRLSKYSQILLSELGHGTVDWIPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATD 183 Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250 IP HN +EI +A L+DNP+ + +++Y+ GPD+PT ++ + E I + Y+ GRG Sbjct: 184 IPPHNAREIGQALTMLLDNPDAGLSDVMQYVQGPDYPTEAEVITAPEDIKKIYKTGRGSI 243 Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-- 308 R+RA W EE C V+T +P+QV ++++E+IA L+ AK++PL++D+RDES + Sbjct: 244 RMRAVWQKEE-----GCAVITALPHQVSGAKVLEQIAALMRAKKLPLVDDLRDESDHENP 298 Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368 R+V+ P++ +D + +M +F+ +D+E + +N+N++ + P V L IL EWL +R Sbjct: 299 TRLVIVPRSNRVDLEQVMYYLFVNTDLEKSYRVNLNMIGLDNRPAVKGLLTILNEWLVYR 358 Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQV 428 R+ + R + R++ + RR+EILKGLLIAYLNIDE+I IIR ED+PK ++ RF+L++ Q Sbjct: 359 RQTVTNRLNHRLEKVLRRLEILKGLLIAYLNIDEVIEIIRYEDEPKAELMRRFALSDIQA 418 Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488 +AIL LRLR L KLEE ++++E D L E++ I+ LLNS ++ + KEI + Sbjct: 419 EAILELRLRHLAKLEEIKLQAESDELEKERDSIEKLLNSPRRLNTLLK------KEIEAD 472 Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548 + + G R + K +Q M+ EP+T+V+S GW+RS K H +D S + ++ G Sbjct: 473 AKEFGDERRSPIRPQEEAKVVNEQDMLPSEPVTIVLSEMGWVRSAKGHEIDPSTMSYRAG 532 Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608 DS A+ + +L L + G++Y+L ++ SGR GE + + + + Sbjct: 533 DSYHSAVRGMSNQPVLFLDSTGRSYSLSPNDMPSGRSQGEPLTGKLTFPPDASVKYMLAG 592 Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH------VA 662 + + L+ + +G ++ E+ + GK L VS E ++ V + + Sbjct: 593 AAKQEYLLATKEGYGSVLSYEEMETKNKTGKGLLTVSDETELLAPFLVDAEKKNNQHWLV 652 Query: 663 VVGENRKLLIFSIDQIPEMS-RGKGVRL 689 ++ + ++L S + + EM+ +G+G RL Sbjct: 653 IITDKTRILAISAEHLNEMNKKGRGTRL 680 Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 60/239 (25%), Positives = 113/239 (47%), Gaps = 11/239 (4%) Query: 515 IEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT 574 + E +TV++S +G IR K H++D ++ FK GD A+ + + L+ T G++YT Sbjct: 736 LHPEAVTVIMSEKGLIRCQKGHNIDAKSVGFKTGDDYFDAVEGMSNQAVHLIDTTGQSYT 795 Query: 575 LPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIAN 634 + L SGR G+ + + + + + +S+ K+L+ S G FI ++ + Sbjct: 796 VDVDALPSGRSKGDDLTGRLKVQKGAQLRHVVMGESSDKILMASDAGYGFICSIDDLTSK 855 Query: 635 TRKGKTFLKVSSEEKMKLVVKVTGDHVA----VVGENRKLLIFSIDQIPEMSRGKGVRL- 689 R GK+ L + E + L + D ++ ++ + ++LIF ++P M +GKG ++ Sbjct: 856 NRAGKSLLTL-PENALPLPPQRLNDELSDLIMIITQGGRMLIFEASELPTMVKGKGNQMV 914 Query: 690 ---QSYKDGGISDVICFKIC--EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKG 743 S G V ++ + R S N+L + KRG G+ +P+G Sbjct: 915 SIPASQAASGEDKVAWLRVLPENASVTLHFGKRKLTMSMNELQTFKAKRGRRGTSLPRG 973 >gi|189474076|gb|ACD99844.1| ParC [Shigella flexneri] Length = 657 Score = 500 bits (1288), Expect = e-139, Method: Compositional matrix adjust. Identities = 255/662 (38%), Positives = 412/662 (62%), Gaps = 20/662 (3%) Query: 23 RFALEE----RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78 R AL E YL Y++ I +RA+P + DG KPV RRI++AMSE+GL+ A FKKSAR Sbjct: 7 RLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSART 66 Query: 79 VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMT 137 VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S AA RYTE+R++ Sbjct: 67 VGDVLGKYHPHGDIACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLS 126 Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197 + +EL+L + + D+ ++ EP + P++ PN+L NGT+GIAVGMAT IP HN++ Sbjct: 127 KYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLR 186 Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257 E+ +AA+ALID P+ ++++LL+ + GPD+PT I+ SR I + Y GRG R+RA W Sbjct: 187 EVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWK 246 Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFP 315 E+ +V++ +P+QV +R++E+IA + K++P+++D+RDES + R+V+ P Sbjct: 247 KED-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVP 301 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 ++ +D D +M +F +D+E + +N+N++ + P V L IL EWL RR+ + RR Sbjct: 302 RSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRR 361 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435 ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF LTE Q +AIL L+ Sbjct: 362 LNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAEAILELK 421 Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495 LR L KLEE +I+ E L E++++ +L S ++ N + E++ + + R Sbjct: 422 LRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDD-----R 476 Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555 R+ E A KA + M+ EP+T+V+S GW+RS K H +D L++K GDS K A+ Sbjct: 477 RSPLQEREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAV 535 Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615 + ++ + + G++Y + L S RG GE + + L + + KLL Sbjct: 536 KGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMESDDQKLL 595 Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--KLVVKVTGDHVAVVGENRKLLIF 673 + S G F+ ++++A R GK + + + +V++ D + + + ++L+F Sbjct: 596 MASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMF 655 Query: 674 SI 675 + Sbjct: 656 PV 657 >gi|91228381|ref|ZP_01262308.1| DNA topoisomerase IV subunit A [Vibrio alginolyticus 12G01] gi|91188080|gb|EAS74385.1| DNA topoisomerase IV subunit A [Vibrio alginolyticus 12G01] Length = 761 Score = 500 bits (1287), Expect = e-139, Method: Compositional matrix adjust. Identities = 266/687 (38%), Positives = 424/687 (61%), Gaps = 17/687 (2%) Query: 9 SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68 S + + V+ + +R E+ YL Y++ I +RA+P + DG KPV RRII+AMSE+GL Sbjct: 2 STEITYDGVEQLPMRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61 Query: 69 GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAA 127 A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S A Sbjct: 62 SAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFA 121 Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187 A RYTEA++++ AE++L + + V+++ ++ EP + P++ P++L NG +GIAVGM Sbjct: 122 AMRYTEAKLSKFAEVLLGELGQGTVEWQPNFDGTMKEPQMLPARLPHILLNGVTGIAVGM 181 Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247 AT IP HNV+EI +A + LIDNP+ + +++Y+ GPD+PT I+ + I + YR GR Sbjct: 182 ATDIPPHNVREIADATIHLIDNPKAELPDVMQYVKGPDYPTEAEIISPQADIEKIYRNGR 241 Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307 G ++RA W E GS IV+T +P+QV ++L+E+IA + AK++P+++D+RDES Sbjct: 242 GSIKMRAVWHKE----GS-DIVITSLPHQVSGAKLLEQIANQMRAKKLPMVDDLRDESDH 296 Query: 308 D--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365 + RIV+ PK+ +D DLLM +F +D+E + +N+N++ + PQV L IL EW+ Sbjct: 297 ENPTRIVVVPKSNRVDCDLLMNHLFASTDLERSYRVNLNMIGLDNRPQVKGLVQILSEWI 356 Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425 RR + RR R+ + R+ IL+GLL+AYLN+DE+I IIR ED PK V++ RF +T+ Sbjct: 357 EFRRTTVRRRLQHRLDKVMARLHILEGLLVAYLNLDEVIEIIRTEDDPKAVLMERFGITD 416 Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485 Q DAIL+ +LR L KLEE +I+ E D L E+EK++ LL S ++ + EI+ E Sbjct: 417 IQADAILDTKLRHLAKLEEMKIRGEQDELEKEREKLEQLLGSERRLNTLLKKEIKADAEK 476 Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545 + RR+ E + A KA ++ ++ EPITVV+S +GWIR K H VD L++ Sbjct: 477 YGDD-----RRSPMVERAEA-KALTERDLVPSEPITVVLSEKGWIRHAKGHDVDAEGLNY 530 Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605 K GD + + L +DG++Y+L + +L S R GE I +++ I Sbjct: 531 KSGDKYLAHARGKSNQPAVFLGSDGRSYSLESHSLPSARSQGEPITGRLNITAGSSIRQV 590 Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVA 662 + + LV S G F+ + +++++ R GK + + + ++ K + + D + Sbjct: 591 IMSEEEQLWLVGSDAGYGFVCKGADLLSKNRSGKALVTLPANSEIMTPKEIEDLDSDEIL 650 Query: 663 VVGENRKLLIFSIDQIPEMSRGKGVRL 689 + ++L+F I +P++++GKG ++ Sbjct: 651 AITNQGRMLLFPIKDLPQLAKGKGNKI 677 >gi|15837954|ref|NP_298642.1| DNA topoisomerase IV subunit A [Xylella fastidiosa 9a5c] gi|9106353|gb|AAF84162.1|AE003967_6 topoisomerase IV subunit [Xylella fastidiosa 9a5c] Length = 749 Score = 500 bits (1287), Expect = e-139, Method: Compositional matrix adjust. Identities = 276/737 (37%), Positives = 428/737 (58%), Gaps = 23/737 (3%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 + LR E YL Y++ + +RA+P + DG KPV RRII+AM E+ L+ A KKS R V Sbjct: 15 MPLREYAERAYLDYSMYVVLDRALPFIGDGLKPVQRRIIYAMHELRLNPKAKPKKSVRAV 74 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQ 138 G+VIGK HPHGD + Y++LV +AQPF RYPLI GQGNFG+ D S AA RYTE+++T Sbjct: 75 GDVIGKYHPHGDLACYEALVLMAQPFSYRYPLIEGQGNFGSSDDPKSFAAMRYTESKLTP 134 Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198 ++E++L + E V++ ++ EP PS+ P+LL NGT+GIAVGMAT +P HN+ E Sbjct: 135 ISEILLSELSEGTVNWITNFDGTLEEPAWLPSRLPHLLLNGTTGIAVGMATDVPPHNLNE 194 Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258 I A + L+DNP +I L +YI GPD+PT I+ + Y G G R RA + Sbjct: 195 IASALIHLLDNPNATIAALCQYIRGPDYPTAAEIITPPSDLQNLYETGNGSVRTRATYHK 254 Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLL--EDIRDES--AEDVRIVLF 314 E+ +V+T +PYQV S++IE+IA+ I +K++P L E +RDES VRIVLF Sbjct: 255 ED-----GNVVITSLPYQVSPSKVIEQIAQQIRSKKLPWLDGEGVRDESDHKNPVRIVLF 309 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 P+++ +D + LM +F +D+E +N+NV+ + PQV PL +L EWL+ R + + Sbjct: 310 PRSQRIDVEQLMGHLFATTDLEKSHRVNLNVIGLDGRPQVKPLKQLLSEWLSFRSDTVTH 369 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNL 434 R +R+Q ++ R+ +L+GLLIA+LN+D++I IIRNED+PKPV+++RF L++ Q + IL+ Sbjct: 370 RLKYRLQKVESRLHLLEGLLIAFLNLDKVIHIIRNEDEPKPVLIARFGLSDAQTEYILDT 429 Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494 +LR L +LEE I++E D L E+++I+ +L+S Q I E+ + + G Sbjct: 430 KLRQLARLEEMAIRNEQDALTKERDEINVILDSDIQLKKLIK------DELLADAKTFGD 483 Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIA 554 R +A +A + ++ EP+TVV+S +GWIR+ K H VD S + ++EGD L A Sbjct: 484 ARRAPLVARQAAQAIDESELVASEPMTVVLSEKGWIRAAKGHEVDPSGMSYREGDRLLAA 543 Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614 + +T ++ L ++G+AY+ L S RG+GE + D+ Sbjct: 544 VRTRSTHQVSFLDSEGRAYSTLVHTLPSARGNGEPLTGRFSPAPGASFQAMASADNDKLF 603 Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---DHVAVVGENRKLL 671 ++ SS G FI + + GKT + ++ ++ + +T D + V LL Sbjct: 604 VLASSHGYGFITRFENLTGRNKAGKTMIHLTPGAQVMGLAPLTDVRHDRIVAVTSAGNLL 663 Query: 672 IFSIDQIPEMSRGKGVRLQSYKDGGISD---VICFKICEGLTWIDSAG-RSYNRSENDLL 727 + ++PE+ +GKG +L ++ V + T + +G R+ S DL Sbjct: 664 AIAASELPELDKGKGNKLIDIPKTKLATERLVAVIAVASSHTLLLYSGERTMRLSFKDLE 723 Query: 728 GWLGKRGGVGSLVPKGF 744 +L RG G L+P+G+ Sbjct: 724 AYLDTRGSRGHLLPRGW 740 >gi|332290089|ref|YP_004420941.1| DNA topoisomerase IV subunit A [Gallibacterium anatis UMN179] gi|330432985|gb|AEC18044.1| DNA topoisomerase IV subunit A [Gallibacterium anatis UMN179] Length = 731 Score = 500 bits (1287), Expect = e-139, Method: Compositional matrix adjust. Identities = 267/727 (36%), Positives = 439/727 (60%), Gaps = 22/727 (3%) Query: 35 LSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSV 94 + I +RA+P + DG KPV RRII+AMSE+GL+ A +KKSAR VG+V+GK HPHGD + Sbjct: 1 MYVIMDRALPFIGDGLKPVQRRIIYAMSELGLNASAKYKKSARTVGDVLGKFHPHGDTAC 60 Query: 95 YDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQVAELILQGVDEDAVD 153 Y+++V +AQPF RYPL+ GQGN+G D S AA RYTE+R+++++EL+L + + VD Sbjct: 61 YEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKISELLLSELGQGTVD 120 Query: 154 FRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEIS 213 ++ ++ EP P++ P++L NGT+GIAVGMAT IP HN+ EI +A + L++NP+ S Sbjct: 121 YQPNFDGTLDEPQYLPARLPHILLNGTTGIAVGMATDIPPHNINEIAQALILLLENPDTS 180 Query: 214 IEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEI 273 ++++L+ + PDFPT I+ +E + + Y G+G ++RA W E+ IV+T + Sbjct: 181 MDEVLDIVKAPDFPTEAEIITPKEDLRKIYLNGKGSLKMRAVWSKED-----GEIVITAL 235 Query: 274 PYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFPKNRSLDPDLLMESIFM 331 PYQ +++IE+IA + K++P+++DI+DES + R+V+ P++ +D + LM +F Sbjct: 236 PYQASGAKIIEQIAAQMRNKKLPMVDDIKDESDHENPTRLVIVPRSNRVDENELMAHLFA 295 Query: 332 LSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILK 391 +D+E + +NMN++ + R P V L IL EWL+ RR+ + RR +R+ + R+ IL Sbjct: 296 TTDLEKSYRVNMNMIGLDRKPAVKNLYTILTEWLSFRRQTVTRRLQYRLDKVLSRLHILD 355 Query: 392 GLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451 GLLIA+LNIDE+I IIRNED+PK ++SRF+L+E Q +AILNLRLR L KLEE ++++E Sbjct: 356 GLLIAFLNIDEVIHIIRNEDEPKQELMSRFALSEEQAEAILNLRLRHLAKLEETELRAEQ 415 Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511 L E+++++ +L+S K I EI + + ++ R + E A KA + Sbjct: 416 KQLEQERKQLEKILSSDKNLNQLIKKEIEQDAKTYASP-----RLSKIVEREEA-KAISE 469 Query: 512 QAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGK 571 A++ EP+TV++S GW+R K H +D +L +K GD+ + + +++ L + G+ Sbjct: 470 SALVPVEPVTVILSEMGWVRCAKGHDIDPQSLSYKAGDNYLAHVCGRSNQQVIFLDSTGR 529 Query: 572 AYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEI 631 +Y+L +L S R GE I + L I + + LL+ S G F+ ++ Sbjct: 530 SYSLDPLSLPSARSQGEPITGKLTLPAGAMIEQLLMPKAEQALLMASDAGYGFVCNAEDL 589 Query: 632 IANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVG--ENRKLLIFSIDQIPEMSRGKG--- 686 I + GK + + K+ V + V +V K+L+F + ++P++S+GKG Sbjct: 590 ITRNKAGKAAISLPENAKVLPPVVIENKSVLLVAITSANKMLLFPLSELPQLSKGKGNKI 649 Query: 687 VRLQSYKDGGISDVIC--FKICEGLTWIDSAG-RSYNRSENDLLGWLGKRGGVGSLVPKG 743 + + + K +++ F I EG + I +G R ++ + G+RG G+ +P+G Sbjct: 650 INIPAAKAKAREELLVRLFVIEEGSSLIFRSGKRKVTLDAKEISHYYGERGRRGASLPRG 709 Query: 744 FPRSGKF 750 S + Sbjct: 710 VQHSAEI 716 >gi|220935287|ref|YP_002514186.1| DNA topoisomerase (ATP-hydrolyzing) [Thioalkalivibrio sp. HL-EbGR7] gi|219996597|gb|ACL73199.1| DNA topoisomerase (ATP-hydrolyzing) [Thioalkalivibrio sp. HL-EbGR7] Length = 749 Score = 500 bits (1287), Expect = e-139, Method: Compositional matrix adjust. Identities = 275/744 (36%), Positives = 433/744 (58%), Gaps = 27/744 (3%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 E + + L+ E+ YL Y++ I +RA+P++ DG KPV RRII+AMSE+GL + +KK Sbjct: 9 EGAERLPLKDFTEKAYLDYSMYVILDRALPNIGDGLKPVQRRIIYAMSELGLSAASKYKK 68 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTE 133 SAR VG+V+GK HPHGD + Y+++V +AQPF RYP + GQGN+G+ D S AA RYTE Sbjct: 69 SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPFVDGQGNWGSPDDPKSFAAMRYTE 128 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 +R++ A+L+L + + VD+ ++ EP V P++ PN+L NG +GIAVGMAT IP Sbjct: 129 SRLSPYAQLLLSELGQGTVDWVPNFDGTLEEPKVLPARLPNVLLNGGTGIAVGMATDIPP 188 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN++E+ A + L+DNP S+ L E+I GPDFPT I+ R + + Y G GG R+R Sbjct: 189 HNLREVASACVHLLDNPRASVADLCEHIQGPDFPTEAEIITPRAELRKMYESGNGGLRMR 248 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRI 311 AR+ E I++T +PYQV S+++E+IA + AK++P++ED+RDES + R+ Sbjct: 249 ARYEREGTD-----IIITALPYQVSGSKVLEQIAAQMNAKKLPMVEDLRDESDHEHPTRL 303 Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371 V+ P++ ++ + LM +F +D+E + +N+N++ + PQV L +L EWL R E Sbjct: 304 VIQPRSNRVEVEALMAHLFATTDLERSYRVNLNMIGLDGRPQVKGLLTLLGEWLHFRTET 363 Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431 + RR +R+ + R+ IL+GLLIAYLNIDE+I IIR D+PKPV++ RF LT+ Q +AI Sbjct: 364 VRRRLQWRLDKVLARLHILEGLLIAYLNIDEVIRIIRENDEPKPVLMERFGLTDTQAEAI 423 Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491 L L+LR L KLEE +I+ E D L E++ ++ L S + I EI+ E F Sbjct: 424 LELKLRHLAKLEEMKIRGEQDELEKERDSLEKTLGSAARLKRLIREEIQADAEKF----- 478 Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551 G R + A +A + ++ EP+TVV+S GW+R+ K H VD L +K GD+ Sbjct: 479 -GDERRSPIVARAAAQAMDESELVPTEPLTVVLSKMGWVRAAKGHDVDAEGLSYKSGDAF 537 Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611 A + + + + G+ YTLPA L S RG GE + + V + + Sbjct: 538 LSAARGRSNQPAVFIDSTGRTYTLPAHTLPSARGQGEPLSGRLSPPDGARFVGVMMGAPS 597 Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV---TGDHVAVVGENR 668 L+ + G F+ ++ + + GK L V + K+ V+V D +A Sbjct: 598 DLFLLSTDYGYGFVCSLEDMQSRNKAGKAVLSVPAGAKVLPPVRVRDIDADWIAAATSEG 657 Query: 669 KLLIFSIDQIPEMSRGKGVRLQSY-------KDGGISDVICFKICEGLTWIDSAGRSYNR 721 LL+ ++++P M+RGKG ++ + ++ ++ + + E LT + AG+ + Sbjct: 658 HLLVTRLNELPRMARGKGNKIINVPSAKLKTREEWVAAITLVQDGEPLTVV--AGKKFKT 715 Query: 722 SEN-DLLGWLGKRGGVGSLVPKGF 744 + ++ + +RG G +P+GF Sbjct: 716 MKGPEVDEYAAERGKRGKKLPRGF 739 >gi|254361259|ref|ZP_04977402.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Mannheimia haemolytica PHL213] gi|153092755|gb|EDN73798.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Mannheimia haemolytica PHL213] Length = 748 Score = 499 bits (1286), Expect = e-139, Method: Compositional matrix adjust. Identities = 264/743 (35%), Positives = 445/743 (59%), Gaps = 25/743 (3%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 E ++ + ++ E+ YL Y++ I +RA+P + DG KPV RRII+AMSE+GL+ A +KK Sbjct: 8 EGIEQMPIKRFTEDAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAMSELGLNASAKYKK 67 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTE 133 SAR VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S AA RYTE Sbjct: 68 SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 127 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 ++++++AE++L + + VD++ ++ EP P++ P++L NGT GIAVGMAT IP Sbjct: 128 SKLSKIAEILLGELGQGTVDYQPNFDGSLEEPKYLPARLPHILLNGTMGIAVGMATDIPP 187 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E+ +A++ L+DNP+ +++ +L + GPD+PT I+ + I Y GRG ++R Sbjct: 188 HNINELADASVMLLDNPKATLDDVLSVVQGPDYPTEAEIITPKAEIARMYEQGRGSIKMR 247 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRI 311 A W EE IV++ +P+Q S++IE++A + K++P+++DIRDES + +RI Sbjct: 248 AVWKKEE-----GEIVISALPHQASPSKIIEQVATQMRNKKLPMVDDIRDESDHENPIRI 302 Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371 V+ P++ +D D LM+ +F +D+E + +NMN++ + P V L IL EWL+ RR Sbjct: 303 VIVPRSNRIDFDALMDHLFATTDLEKSYRVNMNMIGLDGKPAVKNLLTILNEWLSFRRTT 362 Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431 + RR ++R+ I R+ IL GL+IA+LNIDE+I IIRNED+PK +++RF+LT+ Q +AI Sbjct: 363 VTRRLNYRLDKILNRLHILDGLMIAFLNIDEVIEIIRNEDEPKAELMARFNLTDVQAEAI 422 Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491 LNLRLR L KLEE+Q+++E L E++++ +L S ++ + I EI+ + F+ Sbjct: 423 LNLRLRHLAKLEEHQLQAEKSELEKERDELQLILGSERRLNSLIKKEIQADAKAFASP-- 480 Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551 RR+ E + + KA + + E +TV++S +GW+R K H +D+ AL + GD Sbjct: 481 ---RRSPLVERAES-KAIAESDLTPTEDVTVILSEKGWVRCAKGHDIDVQALSHRAGDGY 536 Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611 + ++ L + G+AY L +L S R GE + I L + + Sbjct: 537 LAHARGRSNQPVVFLDSTGRAYALDPTSLPSARSQGEPLTGKITLPEGAVVQQVLMASPE 596 Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVAVVGENR 668 K+L+ S G FI +++++ + GK + ++ K+ +L+ + + Sbjct: 597 TKVLMASDSGYGFICTFADLVSRNKAGKAVISLTENAKVLPPQLLENDENLSLVAMSNVG 656 Query: 669 KLLIFSIDQIPEMSRGKGVRL-----QSYKDGG--ISDVICFKICEGLTWIDSAGRSYNR 721 ++L+F + ++P++S+GKG ++ + K G ++ ++ K L ++ S R Sbjct: 657 RMLVFPVSELPQLSKGKGNKIINISAAAAKSGDEYLARLLVIKPTNSLVFV-SGKRKITL 715 Query: 722 SENDLLGWLGKRGGVGSLVPKGF 744 +D+ + G+R GS + +G Sbjct: 716 KPSDVDNYRGERARKGSQLVRGL 738 >gi|167585849|ref|ZP_02378237.1| DNA topoisomerase IV, A subunit [Burkholderia ubonensis Bu] Length = 712 Score = 499 bits (1286), Expect = e-139, Method: Compositional matrix adjust. Identities = 281/699 (40%), Positives = 418/699 (59%), Gaps = 32/699 (4%) Query: 19 AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78 A++L E+ YL+YA+S +K RA+PD+ DG KPV RRI+ AM+EMGL A KSAR+ Sbjct: 19 ALTLGNYAEQAYLSYAVSVVKGRALPDVCDGQKPVQRRILFAMNEMGLGPDAKPVKSARV 78 Query: 79 VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138 VG+V+GK HPHGDQS YD+LVRLAQ F RYPLI GQGNFG+ DGD AAA RYTEAR+T Sbjct: 79 VGDVLGKYHPHGDQSAYDALVRLAQDFSLRYPLIDGQGNFGSRDGDGAAAMRYTEARLTP 138 Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198 +++L+L +D+ VDF Y+ EP + P + P +L NG SGIAVG+AT IPSHN++E Sbjct: 139 ISKLLLDEIDQGTVDFMPNYDGSFEEPKLLPGRLPFVLLNGASGIAVGLATEIPSHNLRE 198 Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258 + AA+ALI +P ++ +L+ I GPDFP GG I+ S I +Y GRG +VRARW + Sbjct: 199 VAAAAVALIRHPHLTHAELMGLIPGPDFPGGGQIISSDAEISTAYESGRGSLKVRARWKI 258 Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAK------------------RIPLLED 300 E++ RG W +VVTE+P +++E+I EL K + LL+ Sbjct: 259 EDLARGQWQLVVTELPPSTSCQKVLEEIEELTNPKLKLGKKTLTPEQLNTKKAMLDLLDA 318 Query: 301 IRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLD 358 +RDES ++ VR+V PK+R++D + S+ + +E+ LN+ ++ P L Sbjct: 319 VRDESGKEAPVRLVFEPKSRTIDQTEFVNSLLAHTSLESNATLNLVMIGADGRPGQKGLL 378 Query: 359 GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV 418 IL EW+ R+ + RR R+ +D R+ IL+G +I +LNIDE+I IIR D+PK ++ Sbjct: 379 TILGEWVKFRQLTMTRRCRHRLGKVDDRIHILEGRMIVFLNIDEVIRIIRESDEPKAALM 438 Query: 419 SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE 478 S F L+E Q + IL +RLR L +LE+ +I+ ELD L EK K++ LL N+ A + Sbjct: 439 SAFGLSERQAEDILEIRLRQLARLEKIKIEKELDALRDEKAKLEELLA------NESAMK 492 Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV 538 +KEI + + G R T + + +AT +A + EP+TVV+S +GW+R+LK H + Sbjct: 493 RLMIKEIEADAKQYGDDRRTL--IQQEKRATF-EAKVVDEPVTVVVSQKGWVRALKGHGL 549 Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNH 598 D + FK GDSL A T DR++ + G+ Y++ L GRG G + LI+L Sbjct: 550 DPAGFSFKAGDSLYAAFQCRTPDRLIAWGSRGRVYSVDVAVLPGGRGDGVPVTSLIELES 609 Query: 599 NQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV--SSEEKMKLVVKV 656 ++ F + +LL+ SS G F+ + ++++ + GK F+ + + + V Sbjct: 610 GTHLMHYFAASADQQLLLASSNGFGFLAKVGDMVSRVKAGKAFMTIDEGAAPLAPMPVLP 669 Query: 657 TGDHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKD 694 VA + +LL+F +D++ +S G+GV L + D Sbjct: 670 NAKQVACLSSGGRLLVFGMDEMKTLSGGGRGVILMALDD 708 >gi|50083513|ref|YP_045023.1| DNA topoisomerase IV subunit A [Acinetobacter sp. ADP1] gi|49529489|emb|CAG67201.1| DNA topoisomerase IV, subunit A [Acinetobacter sp. ADP1] Length = 738 Score = 499 bits (1286), Expect = e-139, Method: Compositional matrix adjust. Identities = 274/731 (37%), Positives = 435/731 (59%), Gaps = 20/731 (2%) Query: 27 EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86 E+ YL YA+ I +RA+P + DG KPV RRI++AMSE+GL KKSAR VG+V+GK Sbjct: 19 EQAYLNYAMYVIMDRALPHISDGLKPVQRRIVYAMSELGLKSTGKPKKSARTVGDVLGKY 78 Query: 87 HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQVAELILQ 145 HPHGD + Y+++V +AQPF RYPL+ GQGN+G+ D S AA RYTEA+++ +EL+L Sbjct: 79 HPHGDSACYEAMVLMAQPFSYRYPLVEGQGNWGSPDDPKSFAAMRYTEAKLSAYSELLLS 138 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 + + VD++D ++ EP+ P++ PN+L NGT GIAVGMAT IP HN++E+ + +A Sbjct: 139 ELGQGTVDWQDNFDGSLKEPINLPARVPNILLNGTMGIAVGMATDIPPHNLREVVKGTIA 198 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265 LI NPE + EKL EYI PD PT I+ ++ +++ GRG +R RA + +++ Sbjct: 199 LIRNPETTDEKLAEYIPAPDLPTKAEIITPKDELLKIQTTGRGSYRARAVYHIDK----- 253 Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE--DVRIVLFPKNRSLDPD 323 IV+TE+PYQV S++I +IA+ + AK++PL+ D+RDES R+V+ ++ +D Sbjct: 254 NEIVITELPYQVSGSKVITQIADQMQAKKLPLVSDVRDESDHRNPTRLVIVLRSNRVDAA 313 Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383 +M +F +D+ET + +N+N++ PQV + IL EW+ R+ + RR + + I Sbjct: 314 AVMSHLFATTDLETSYRVNLNMIGSDGRPQVKSIRRILLEWIEIRKTTVTRRLQYHLNKI 373 Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLE 443 ++R+ IL GLLIAYL+ID +I IIR ED+PKPV++ F++ E Q +AIL L+LR L KLE Sbjct: 374 EKRLHILAGLLIAYLDIDTVIKIIREEDQPKPVLMQHFNIDEIQAEAILELKLRHLAKLE 433 Query: 444 EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVS 503 E +I+ E + L A I L + + N I E++E + F RR+ + Sbjct: 434 EMEIRREQEELEARAAVIREQLGNPESLKNLIINELKEDAKKFGDD-----RRSPIVQRE 488 Query: 504 RADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRI 563 A + +Q ++ E +TVV+S GWIRS K VD L+++ GD + + R+ Sbjct: 489 EAVQIR-EQDLLPAETVTVVLSEAGWIRSAKGE-VDAENLNYRAGDQYQSHAIGKSNQRV 546 Query: 564 LLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNA 623 +L G++Y L GNL S RG GE + + + + ++ D +L+ VS G Sbjct: 547 YVLDETGRSYALSIGNLPSARGLGEPLSSKLSPANGVSFIQVYINDEESELIAVSDAGYG 606 Query: 624 FIVEESEIIANTRKGKTFLKVSSEEK-MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMS 682 F + ++ N + GK FL V K + L+ H+A++ + +LLI + ++P ++ Sbjct: 607 FKTQTKQLDTNAKAGKAFLSVPEGAKALPLLTIRDATHLAMLSSSGRLLIVDLSELPILN 666 Query: 683 RGKGVRLQSYKDGG-ISDVICFKICEGLTWIDSAGRSYNRSE-NDLLGWLGKRGGVGSLV 740 +GKG +L D I + + E + + AG+ + + + +DL ++GKR G L+ Sbjct: 667 KGKGNKLIQLDDKDQILSMTLLSLNEIIQVV--AGQQHLKIKGDDLQKYMGKRATKGQLL 724 Query: 741 PKGFPRSGKFL 751 P+G+ ++ + L Sbjct: 725 PRGYQKANRLL 735 >gi|301170269|emb|CBW29874.1| DNA topoisomerase IV, subunit A [Haemophilus influenzae 10810] Length = 747 Score = 499 bits (1286), Expect = e-139, Method: Compositional matrix adjust. Identities = 277/743 (37%), Positives = 439/743 (59%), Gaps = 26/743 (3%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 E ++ + LR E+ YL Y++ I +RA+P + DG KPV RRI++AMSE+GL+ A +KK Sbjct: 7 EGIEQMPLRTFTEKAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKYKK 66 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTE 133 SAR VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S AA RYTE Sbjct: 67 SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 126 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 +R+++++E++L + + VD++ ++ +EP P++ P++L NGT+GIAVGMAT IP Sbjct: 127 SRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATDIPP 186 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ EI +AA+ L+DNP+ ++ +LE + GPDFPT I+ + I + Y GRG ++R Sbjct: 187 HNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRGSIKMR 246 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRI 311 A W E+ I+++ +P+Q S++I +IA+ + AK++P+LEDIRDE+ + +RI Sbjct: 247 ATWKKED-----GEIIISALPHQSSPSKVIAQIADQMTAKKLPMLEDIRDEADHENPIRI 301 Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371 VL P++ +D D LM +F +D+E + +NMN++ + P V L IL EWL RR Sbjct: 302 VLVPRSNRVDTDALMAHLFATTDLEKSYRVNMNMIGLDHKPAVKGLLEILNEWLTFRRTT 361 Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431 + RR +R+ + R+ IL+GL+IA+LNIDE+I IIR+ED PK +++RF+L++ Q DAI Sbjct: 362 VTRRLQYRLDKVLSRLHILEGLMIAFLNIDEVIEIIRHEDDPKAELMARFNLSDEQADAI 421 Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491 LNLRLR L KLEE Q+K+E D L E+ ++++L S ++ I EI+E + ++ Sbjct: 422 LNLRLRHLAKLEENQLKAEQDELEKERLNLEAILGSERRLNTLIKKEIQEDAKKYASP-- 479 Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551 R + E A K + M+ EP+TV++S GW+R K H +D +L +K GDS Sbjct: 480 ---RMSQLVEREEA-KMISESDMMPAEPVTVILSEMGWVRCAKGHDIDPKSLSYKAGDSY 535 Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611 + ++ + + G++Y L +L S R GE + ++L I + Sbjct: 536 LAHACGKSNQAVVFIDSTGRSYALDPLSLPSARSQGEPLTGKLNLPTGATIEYVVMASEQ 595 Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVAVVGENR 668 +LL+ S G FI + ++IA + GK + + K+ K ++ T VA+ R Sbjct: 596 QELLMASDAGYGFICKFEDLIARNKTGKALISLPENAKVLKPKTLINSTALVVAITSAGR 655 Query: 669 KLLIFSIDQIPEMSRGKGVRLQSYKDGGISD-------VICFKICEGLTWIDSAGRSYNR 721 +LIF +P +S+GKG ++ + D ++ L + S R Sbjct: 656 -MLIFPAQDLPVLSKGKGNKMITIPAANAKDRSELLTKLLLISDQASLEFY-SGKRKIVL 713 Query: 722 SENDLLGWLGKRGGVGSLVPKGF 744 DL + +RG GS +P+G Sbjct: 714 KPEDLQKFRAERGRKGSTLPRGL 736 >gi|325578620|ref|ZP_08148720.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Haemophilus parainfluenzae ATCC 33392] gi|325159856|gb|EGC71986.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Haemophilus parainfluenzae ATCC 33392] Length = 751 Score = 499 bits (1285), Expect = e-139, Method: Compositional matrix adjust. Identities = 277/741 (37%), Positives = 435/741 (58%), Gaps = 22/741 (2%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 E ++ + LR E+ YL Y++ I +RA+P + DG KPV RRI++AMSE+GL+ A FKK Sbjct: 7 EGIEQMPLRTFTEKAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNAAAKFKK 66 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTE 133 SAR VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S AA RYTE Sbjct: 67 SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 126 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 +R+++++E++L + + VDF+ ++ EP P++ P++L NGT+GIAVGMAT IP Sbjct: 127 SRLSKISEILLSELGQGTVDFQPNFDGTLEEPQYLPARLPHILLNGTTGIAVGMATDIPP 186 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E+ +AA+ L+DNP++ ++ +L I GPDFPT I+ ++ I + Y GRG ++R Sbjct: 187 HNINEVADAAVMLLDNPKVGLDDVLNIIQGPDFPTEAEIISPKDDIRKMYETGRGSIKMR 246 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRI 311 A W E+ I+++ +P+Q S++I +IAE + AK++P++EDIRDE+ + VRI Sbjct: 247 ATWHKED-----GEIIISALPHQSSPSKIIAQIAEQMTAKKLPMVEDIRDEADYENPVRI 301 Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371 VL P++ +D D LM +F +D+E + +NMN++ + P V L +L EWL RR Sbjct: 302 VLVPRSNRVDTDALMAHLFATTDLEKSYRVNMNMIGLDHKPAVKGLLQVLTEWLTFRRTT 361 Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431 + RR R+ + R+ IL GL+IA+LNIDE+I IIR ED+PK V+++RF+L++ Q +AI Sbjct: 362 VTRRLQHRLDKVLARLHILDGLMIAFLNIDEVIEIIRTEDEPKQVLMARFNLSDEQAEAI 421 Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491 LNLRLR L KLEE+Q+++E D L E+ ++ +L S ++ I EI+E + ++ Sbjct: 422 LNLRLRHLAKLEEHQLQAEKDKLEEERSNLELILGSERRLNTLIKKEIQEDAKKYASP-- 479 Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551 R + E A KA + M EP+TV++S GW+R K H +D + L +K GD Sbjct: 480 ---RMSQLVEREEA-KAISESEMTPAEPVTVILSEMGWVRCAKGHDIDPAGLSYKAGDKY 535 Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611 + ++ + + G++Y L +L S R GE + + L I + Sbjct: 536 LAHACGKSNQPVIFIDSTGRSYALDPLSLPSARSQGEPLTGKLTLPAGATIEQVIMEPEK 595 Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENR--K 669 +LL+ S G FI + ++IA + GK + + K+ K++ +V + Sbjct: 596 QELLMASDAGYGFICKFEDLIARNKAGKALISLPENAKVLKPEKLSESASLLVSLTSAGR 655 Query: 670 LLIFSIDQIPEMSRGKGVRLQSYKDGGISD-----VICFKICEGLTW-IDSAGRSYNRSE 723 +LIF + +P +S+GKG ++ S V F I E + S R Sbjct: 656 MLIFPVRDLPALSKGKGNKIISIPAANAKARSELLVKLFLISEQASLEFHSGKRKITLKP 715 Query: 724 NDLLGWLGKRGGVGSLVPKGF 744 DL + +RG GS +P+G Sbjct: 716 EDLQKFRAERGRKGSQLPRGL 736 >gi|261344788|ref|ZP_05972432.1| hypothetical protein PROVRUST_06053 [Providencia rustigianii DSM 4541] gi|282567233|gb|EFB72768.1| DNA topoisomerase IV, A subunit [Providencia rustigianii DSM 4541] Length = 751 Score = 499 bits (1285), Expect = e-139, Method: Compositional matrix adjust. Identities = 266/745 (35%), Positives = 443/745 (59%), Gaps = 23/745 (3%) Query: 12 LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71 + + V+ + L+ E YL Y++ I +RA+P + DG KPV RRI++AMSE+GL A Sbjct: 4 ITHDGVERIPLQTFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLSNAAK 63 Query: 72 FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYR 130 +KKSAR VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S AA R Sbjct: 64 YKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMR 123 Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190 YTE+R+++ AE++L + VD+ ++ +EP + P++ PN+L NGT+GIAVGMAT Sbjct: 124 YTESRLSKYAEVLLSELAHGTVDWVPNFDGTLNEPKMLPARLPNILLNGTTGIAVGMATD 183 Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250 IP HN +E+ A +AL++ P+++++ +++YI GPD+PT I+ S E I + Y+ GRG Sbjct: 184 IPPHNAREVASALVALLEKPKLNLDDIMQYIPGPDYPTEAEIISSPEDIRKIYQNGRGSV 243 Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-- 308 R+RA W E+ V+T +P+QV ++++E+IA + AK++P++ED+RDES + Sbjct: 244 RMRAVWEKED-----GNAVITALPHQVSGAKVLEQIANQMRAKKLPMVEDLRDESDHENP 298 Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368 R+V+ P++ +D + +M +F +D+E + +N+N++ + P V L IL EW+ +R Sbjct: 299 TRLVIVPRSNRVDLEQVMTHLFATTDLERSYRVNLNMIGLDNRPSVKGLVEILNEWITYR 358 Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQV 428 R+ + R + R++ + RR+ IL GLLIAYLNIDE+I IIR E++PKPV++SRF+++E Q Sbjct: 359 RQTVRNRLNHRLEKVLRRLHILDGLLIAYLNIDEVIEIIRAEEEPKPVLMSRFNISETQA 418 Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488 +AIL L+LR L KLEE +I+ E D L E++++ ++L S + I EI+ + + Sbjct: 419 EAILELKLRHLAKLEEMKIRGEQDELAKERDELQAILGSEARLNTLIKKEIQADAKAYGD 478 Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548 RR+ E A KA + ++ EPITVV+S+ GW+RS K H ++ S L +K G Sbjct: 479 D-----RRSPLQEREEA-KALSEHEILPSEPITVVLSDMGWVRSAKGHDIEPSNLSYKAG 532 Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608 DS K A + + L + G++Y++ L S R GE + + L I + Sbjct: 533 DSFKEAARGKSNQAAVFLDSTGRSYSVDPLELPSARSQGEPLTGKLTLPPGATIEHVLMA 592 Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---DHVAVVG 665 K L+ S G FI ++++ + GK + + K+ +++ D + + Sbjct: 593 PEEQKYLMASDAGYGFICTFNDLVTKNKTGKALISLPENAKVLSPIELNNEKEDLLLAIT 652 Query: 666 ENRKLLIFSIDQIPEMSRGKG---VRLQSYKDGGISDVICFKIC---EGLTWIDSAGRSY 719 + ++L+F + +P++S+GKG + + + D++ + + + + R Sbjct: 653 KAGRMLLFPVSNLPQLSKGKGNKIINITGAQAASGEDLLVWLMVVPPQSAITLYFGKRKL 712 Query: 720 NRSENDLLGWLGKRGGVGSLVPKGF 744 DL + +RG G+ +P+G Sbjct: 713 KFKSEDLQKYRAERGRKGTTLPRGL 737 >gi|91782491|ref|YP_557697.1| DNA topoisomerase IV subunit A [Burkholderia xenovorans LB400] gi|91686445|gb|ABE29645.1| DNA topoisomerase IV subunit A [Burkholderia xenovorans LB400] Length = 774 Score = 499 bits (1285), Expect = e-139, Method: Compositional matrix adjust. Identities = 274/690 (39%), Positives = 418/690 (60%), Gaps = 36/690 (5%) Query: 27 EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86 E YL YA+S +K RA+PD+ DG KPV RRI+ AM++MGL A KSAR+VG+V+GK Sbjct: 28 ERAYLDYAVSVVKGRALPDVCDGQKPVQRRILFAMNDMGLSDNAKPVKSARVVGDVLGKY 87 Query: 87 HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQG 146 HPHGDQS YD+LVRLAQ F RYPLI GQGNFG+ DGD AAA RYTEAR+T +A+L+L Sbjct: 88 HPHGDQSAYDALVRLAQDFSMRYPLIDGQGNFGSRDGDGAAAMRYTEARLTPIAKLLLDE 147 Query: 147 VDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALAL 206 +++ VDF Y+ E EP + P++ P +L NG SGIAVG+AT IPSHN++E+ AA+A+ Sbjct: 148 INQGTVDFMKNYDGEFDEPRLLPARLPFVLLNGASGIAVGLATEIPSHNLREVAAAAVAM 207 Query: 207 IDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSW 266 I NP++ +L++YI GPDFP GG I+ S I +Y GRG +VRARW +EE+ RG W Sbjct: 208 IRNPKLQHAELMQYIPGPDFPGGGQIISSEAEISAAYESGRGSLKVRARWKIEELARGQW 267 Query: 267 CIVVTEIPYQVQKSRLIEKIAE-----LIIAKR-------------IPLLEDIRDESAED 308 +V+TE+P +++E+I E + + K+ + LL+ +RDES +D Sbjct: 268 QLVITELPPSTAAQKVLEEIEEQTNPKIKLGKKTLTPEQLQTKQTMLALLDAVRDESGKD 327 Query: 309 --VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366 VR+V PK+ +D + ++ + +E+ LN+ ++ P+ L IL EW+A Sbjct: 328 APVRLVFEPKSSRIDQTDFVNTLLAHTSLESNASLNLVMVGGDGRPRQKGLSEILHEWIA 387 Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426 R + RR+ R+ +D R+ IL+G +I +LNIDE+I IIR D+PK +++ F L++ Sbjct: 388 FRFATVTRRTRHRLSKVDDRIHILEGRMIVFLNIDEVIRIIRESDEPKVALMAAFGLSDR 447 Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486 Q + IL +RLR L +LE+ +I+ EL L EK +++ LL S + A + +KEI Sbjct: 448 QAEDILEIRLRQLARLEKIKIEKELAELKDEKARLEELLGS------ESAMKRLLIKEIE 501 Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546 + G R T + + +AT +A + EP+TVV+S +GW+R+LK H +D + FK Sbjct: 502 GDAKQYGDERRTLIQQEK--RATF-EARVVDEPVTVVVSQKGWVRALKGHGLDAAGFTFK 558 Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606 GD L A T D ++ ++G+ Y++ L GRG G + LI+L ++ + Sbjct: 559 AGDGLYAAFQCRTPDTLVAWGSNGRVYSVAVAMLPGGRGDGVPVTSLIELESGSHLMHYY 618 Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK----MKLVVKVTGDHVA 662 + LL+ SS G FI ++++ + GK+F+ + + + M ++ T H+A Sbjct: 619 AASADQALLLASSNGFGFIARVGDMVSRVKAGKSFMTIDAGAQPLAPMPMLPDAT--HIA 676 Query: 663 VVGENRKLLIFSIDQIPEMS-RGKGVRLQS 691 + N +LL+F +D++ +S G+GV L + Sbjct: 677 CLSSNGRLLVFGLDEMKTLSGGGRGVTLMA 706 >gi|148826812|ref|YP_001291565.1| DNA topoisomerase IV subunit A [Haemophilus influenzae PittGG] gi|148718054|gb|ABQ99181.1| DNA topoisomerase IV subunit A [Haemophilus influenzae PittGG] Length = 747 Score = 499 bits (1285), Expect = e-139, Method: Compositional matrix adjust. Identities = 278/743 (37%), Positives = 438/743 (58%), Gaps = 26/743 (3%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 E ++ + LR E+ YL Y++ I +RA+P + DG KPV RRI++AMSE+GL+ A +KK Sbjct: 7 EGIEQMPLRTFTEKAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKYKK 66 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTE 133 SAR VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S AA RYTE Sbjct: 67 SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 126 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 +R++++AE++L + + VD++ ++ +EP P++ P++L NGT+GIAVGMAT IP Sbjct: 127 SRLSKIAEILLSELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATDIPP 186 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ EI +AA+ L+DNP+ ++ +LE + GPDFPT I+ + I + Y GRG ++R Sbjct: 187 HNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRGSIKMR 246 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRI 311 A W E+ I+++ +P+Q S++I +IA+ + AK++P+LEDIRDE+ + +RI Sbjct: 247 ATWKKED-----GEIIISALPHQSSPSKVIAQIADQMTAKKLPMLEDIRDEADHENPIRI 301 Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371 VL P++ +D D LM +F +D+E + +NMN++ + P V L IL EWL RR Sbjct: 302 VLVPRSNRVDTDALMAHLFATTDLEKSYRVNMNMIGLDHKPAVKGLLEILNEWLTFRRTT 361 Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431 + RR +R+ + R+ IL+GL+IA+LNIDE+I IIR+ED PK +++RF+L++ Q DAI Sbjct: 362 VTRRLQYRLDKVLSRLHILEGLMIAFLNIDEVIEIIRHEDDPKAELMARFNLSDEQADAI 421 Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491 LNLRLR L KLEE Q+K+E D L E+ ++++L S ++ I EI+E + ++ Sbjct: 422 LNLRLRHLAKLEENQLKAEQDELEKERLNLEAILGSERRLNTLIKKEIQEDAKKYASP-- 479 Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551 R + E A K + M EP+TV++S GW+R K H +D +L +K GDS Sbjct: 480 ---RMSQLVEREEA-KMISESDMTPAEPVTVILSEMGWVRCAKGHDIDPKSLSYKAGDSY 535 Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611 + ++ + + G++Y L +L S R GE + ++L I + Sbjct: 536 LAHACGKSNQAVVFIDSTGRSYALDPLSLPSARSQGEPLTGKLNLPTGATIEYVVMASEQ 595 Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVAVVGENR 668 +LL+ S G FI + ++IA + GK + + K+ K ++ T VA+ R Sbjct: 596 QELLMASDAGYGFICKFEDLIARNKTGKALISLPENAKVLKPKTLINSTALVVAITSAGR 655 Query: 669 KLLIFSIDQIPEMSRGKGVRLQSYKDGGISD-------VICFKICEGLTWIDSAGRSYNR 721 +LIF +P +S+GKG ++ + D ++ L + S R Sbjct: 656 -MLIFPAQDLPVLSKGKGNKMITIPAANAKDRSELLTKLLLISDQASLEFY-SGKRKIVL 713 Query: 722 SENDLLGWLGKRGGVGSLVPKGF 744 DL + +RG GS +P+G Sbjct: 714 KPEDLQKFRAERGRKGSTLPRGL 736 >gi|330960107|gb|EGH60367.1| DNA topoisomerase IV subunit A [Pseudomonas syringae pv. maculicola str. ES4326] Length = 751 Score = 499 bits (1285), Expect = e-139, Method: Compositional matrix adjust. Identities = 274/761 (36%), Positives = 450/761 (59%), Gaps = 29/761 (3%) Query: 6 ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65 +S+S L + V+ SL E+ YL Y++ I +RA+P + DG KPV RRII+AMSE+G Sbjct: 1 MSDSLDLSLDGVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELG 60 Query: 66 LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124 L A KKSAR VG+V+GK HPHGD + Y+++V +AQPF RY L+ GQGN+G D Sbjct: 61 LGADAKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPDDPK 120 Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184 S AA RYTEAR+++ +E++L + + D+ ++ EP V P++ PN+L NGT+GIA Sbjct: 121 SFAAMRYTEARLSRYSEVLLSELGQGTADWVPNFDGTLDEPAVLPARLPNILLNGTTGIA 180 Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244 VGMAT +P HN++E+ A + L+D+P+ +I +L E+I+GPD+PT I+ R +++ Y Sbjct: 181 VGMATDVPPHNLREVASACVHLLDDPKATIPELCEHILGPDYPTEAEIITPRADLLKIYE 240 Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304 GRG R+RA + +E+ I+VT +P+QV ++++E+IA + AK++P++ D+RDE Sbjct: 241 TGRGSVRMRAVYRIED-----GDIIVTSLPHQVSGAKVLEQIAAQMQAKKLPMVADLRDE 295 Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362 S + RIV+ P++ ++ D LM+ +F +++E+ + +N+N++ + PQ+ L +L Sbjct: 296 SDHENPCRIVIIPRSNRVELDELMQHLFATTELESSYRVNINIIGLDGKPQLKNLKTLLG 355 Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422 EWL R + RR FR+ ++ R+ +L GLL AYLN+DE+I IIR + PK +++RF Sbjct: 356 EWLTFRIGTVRRRLKFRLDKVEHRLHLLDGLLTAYLNLDEVIHIIRTAEHPKAELIARFG 415 Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482 LTE Q D IL+ RLR L +LEE +++SE D L E+ K+ +LL S + + E+ Sbjct: 416 LTEIQADYILDTRLRQLARLEEMKLRSEQDALRKEQAKLLALLGSEAKLRKLVRAELIAD 475 Query: 483 KEIFSKSTDLGRRRTTFCEVSRAD-KATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS 541 E + RR+ V+RA+ KA + ++ EP+TVV+S +GW+R K H +D + Sbjct: 476 AETYGDD-----RRSPI--VARAEAKALSENELMPTEPVTVVLSEKGWVRCAKGHDIDAT 528 Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD 601 L +K GD K + + + + + G++Y++PA L S RG GE + + Sbjct: 529 GLSYKAGDGFKTSSIGRSNQFAVFIDSTGRSYSVPAHTLPSARGQGEPLTGKLQPPPGAT 588 Query: 602 IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--- 658 + + ++ S G F+V+ ++ A + GK L + + K+ L V Sbjct: 589 FECVLMPEDDALYVIASDAGYGFVVKGEDLQAKNKAGKALLSLPAGAKVILPRPVPDREQ 648 Query: 659 DHVAVVGENRKLLIFSIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTW 711 + +A V +LL+F I +P++ +GKG ++ + ++ ++D+ I +G T Sbjct: 649 NWLAAVTTEGRLLVFKISDLPQLGKGKGNKIIGIPGERVASREEYVTDLAV--IAQGATL 706 Query: 712 IDSAG-RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751 + AG R+ + DL + G+RG G+ +P+GF R L Sbjct: 707 VLQAGKRTLSLKPEDLEHYKGERGRRGNKLPRGFQRVDALL 747 >gi|212711190|ref|ZP_03319318.1| hypothetical protein PROVALCAL_02262 [Providencia alcalifaciens DSM 30120] gi|212686358|gb|EEB45886.1| hypothetical protein PROVALCAL_02262 [Providencia alcalifaciens DSM 30120] Length = 751 Score = 499 bits (1285), Expect = e-139, Method: Compositional matrix adjust. Identities = 267/745 (35%), Positives = 443/745 (59%), Gaps = 23/745 (3%) Query: 12 LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71 + + V+ + L E YL Y++ I +RA+P + DG KPV RRI++AMSE+GL A Sbjct: 4 ITHDGVERLPLHAFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLSNTAK 63 Query: 72 FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYR 130 +KKSAR VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S AA R Sbjct: 64 YKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMR 123 Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190 YTE+R+++ AE++L + VD+ ++ +EP + P++ PN+L NGT+GIAVGMAT Sbjct: 124 YTESRLSKYAEVLLSELGHGTVDWVPNFDGTLNEPKMLPARLPNILLNGTTGIAVGMATD 183 Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250 IP HN +E+ A +AL++ P++++++++++I GPDFPT I+ S E I + Y+ GRG Sbjct: 184 IPPHNAREVASALVALLEKPKLNLDEIMQFIPGPDFPTEAEIISSPEDIRKVYQNGRGSV 243 Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-- 308 R+RA W EE V+T +P+QV ++++E+IA + AK++P++ED+RDES + Sbjct: 244 RMRAVWEKEE-----GNAVITALPHQVSGAKILEQIANQMRAKKLPMVEDLRDESDHENP 298 Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368 R+V+ P++ +D + +M +F +D+E + +N+N++ + P V L IL EW+ +R Sbjct: 299 TRLVIVPRSNRVDLEQVMTHLFATTDLERSYRVNLNMIGLDNRPAVKGLVEILNEWIIYR 358 Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQV 428 R+ + R + R++ + RR+ IL GLLIAYLNIDE+I IIRNED+PK V++SRF++++ Q Sbjct: 359 RQTVRNRLNHRLEKVLRRLHILDGLLIAYLNIDEVIEIIRNEDEPKAVLMSRFNISDTQA 418 Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488 +AIL L+LR L KLEE +I+ E D L E++++ ++L S + I EI+ + + Sbjct: 419 EAILELKLRHLAKLEEMKIRGEQDELAKERDELQAILGSEARLNTLIKKEIQADAKAYGD 478 Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548 RR+ E A KA + ++ EPITVV+S+ GW+RS K H ++ S L +K G Sbjct: 479 D-----RRSPLQEREEA-KALSEHEILPSEPITVVLSDMGWVRSAKGHDIEPSNLSYKAG 532 Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608 DS K A + + L + G++Y++ L S R GE + + L I + Sbjct: 533 DSFKGAARGKSNQAAVFLDSTGRSYSIDPLELPSARSQGEPLTGKLTLPPGATIEHVLMA 592 Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---DHVAVVG 665 K L+ S G FI ++++ + GK + + K+ +++ D + + Sbjct: 593 PEEQKYLMASDAGYGFICTFNDLVTKNKTGKALMSLPENAKVMAPIELNNEKEDLLLAIT 652 Query: 666 ENRKLLIFSIDQIPEMSRGKG---VRLQSYKDGGISDVICFKIC---EGLTWIDSAGRSY 719 + ++L+F + +P++S+GKG + + + D++ + + + + R Sbjct: 653 KAGRMLLFPVSDLPQLSKGKGNKIINITGAQAASGEDLLVWLMVIPPQASITLYFGKRKL 712 Query: 720 NRSENDLLGWLGKRGGVGSLVPKGF 744 DL + +RG G+ +P+G Sbjct: 713 KFKSEDLQKYRAERGRKGTSLPRGL 737 >gi|237798261|ref|ZP_04586722.1| DNA topoisomerase IV subunit A [Pseudomonas syringae pv. oryzae str. 1_6] gi|331021113|gb|EGI01170.1| DNA topoisomerase IV subunit A [Pseudomonas syringae pv. oryzae str. 1_6] Length = 751 Score = 499 bits (1285), Expect = e-139, Method: Compositional matrix adjust. Identities = 275/761 (36%), Positives = 449/761 (59%), Gaps = 29/761 (3%) Query: 6 ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65 +S+S L + V+ SL E+ YL Y++ I +RA+P + DG KPV RRII+AMSE+G Sbjct: 1 MSDSLDLSLDGVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELG 60 Query: 66 LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124 L A KKSAR VG+V+GK HPHGD + Y+++V +AQPF RY L+ GQGN+G D Sbjct: 61 LGADAKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPDDPK 120 Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184 S AA RYTEAR+++ +E++L + + D+ ++ EP V P++ PN+L NGT+GIA Sbjct: 121 SFAAMRYTEARLSRYSEVLLSELGQGTADWVPNFDGTLDEPAVLPARLPNILLNGTTGIA 180 Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244 VGMAT +P HN++E+ A + L+D P+ +I +L E+I+GPD+PT I+ R +++ Y Sbjct: 181 VGMATDVPPHNLREVASACVRLLDEPKATIPELCEHILGPDYPTEAEIITPRADLLKIYE 240 Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304 GRG R+RA + +E+ IVVT +P+QV ++++E+IA + AK++P++ D+RDE Sbjct: 241 TGRGSVRMRAVYRIED-----GDIVVTSLPHQVSGAKVLEQIAAQMQAKKLPMVADLRDE 295 Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362 S + RIV+ P++ ++ D LM+ +F +++E+ + +N+N++ + PQ+ L +L Sbjct: 296 SDHENPCRIVIIPRSNRVELDELMQHLFATTELESSYRVNINIIGLDGKPQLKNLKTLLS 355 Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422 EWL R + RR FR+ ++ R+ +L GLL AYLN+DE+I IIR + PK +++RF Sbjct: 356 EWLTFRIGTVRRRLQFRLDKVEHRLHLLDGLLTAYLNLDEVIHIIRTAEHPKAELIARFG 415 Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482 LTE Q D IL+ RLR L +LEE +++SE D L E+ K+ +LL S + + E+ Sbjct: 416 LTEIQADYILDTRLRQLARLEEMKLRSEQDALRKEQAKLLALLGSESKLRKLVRAELIAD 475 Query: 483 KEIFSKSTDLGRRRTTFCEVSRAD-KATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS 541 E + RR+ V+RA+ KA + ++ EP+TVV+S +GW+R K H +D + Sbjct: 476 AETYGDD-----RRSPI--VARAEAKALSENELMPTEPVTVVLSEKGWVRCAKGHDIDAT 528 Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD 601 L +K GD K + + + + + G++Y++PA L S RG GE + + Sbjct: 529 GLSYKAGDGFKTSSIGRSNQFAVFIDSTGRSYSVPAHTLPSARGQGEPLTGKLQPPPGAT 588 Query: 602 IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--- 658 + + ++ S G F+V+ ++ A + GK L + + K+ L V Sbjct: 589 FECVLMPEDDALYVIASDAGYGFVVKGEDLQAKNKAGKALLSLPAGAKVILPRPVPDREQ 648 Query: 659 DHVAVVGENRKLLIFSIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTW 711 + +A V +LL+F I +P++ +GKG ++ + ++ ++D+ I +G T Sbjct: 649 NWLAAVTTEGRLLVFKISDLPQLGKGKGNKIIGIPGERVASREEYVTDLAV--IAQGATL 706 Query: 712 IDSAG-RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751 + AG R+ + DL + G+RG G+ +P+GF R L Sbjct: 707 VLQAGKRTLSLKPEDLEHYKGERGRRGNKLPRGFQRVDALL 747 >gi|293390337|ref|ZP_06634671.1| DNA topoisomerase IV subunit A [Aggregatibacter actinomycetemcomitans D7S-1] gi|290950871|gb|EFE00990.1| DNA topoisomerase IV subunit A [Aggregatibacter actinomycetemcomitans D7S-1] Length = 719 Score = 499 bits (1284), Expect = e-139, Method: Compositional matrix adjust. Identities = 268/716 (37%), Positives = 433/716 (60%), Gaps = 22/716 (3%) Query: 40 ERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLV 99 +RA+P + DG KPV RRII+AMSE+GL+ A +KKSAR VG+V+GK HPHGD + Y+++V Sbjct: 2 DRALPFIGDGLKPVQRRIIYAMSELGLNATAKYKKSARTVGDVLGKFHPHGDSACYEAIV 61 Query: 100 RLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTY 158 +AQPF RYPL+ GQGN+G +D S AA RYTE+R++++AE++L + + VD++ + Sbjct: 62 LMAQPFSYRYPLVDGQGNWGAVDDPKSFAAMRYTESRLSKIAEILLAELGQGTVDYQPNF 121 Query: 159 NEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLL 218 + EP P++ P++L NGT+GIAVGMAT IP HN+ EI +AA+ L+DNP+ ++++L Sbjct: 122 DGTLEEPQYLPARLPHILLNGTTGIAVGMATDIPPHNINEIADAAVMLLDNPKTTLDELS 181 Query: 219 EYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQ 278 + GPDFPT I+ +E I + Y+LGRG ++RA W E+ IV+ +P+Q Sbjct: 182 TVVQGPDFPTEAEIISPKEDIRKIYQLGRGSIKMRATWKKED-----GEIVIRALPHQSS 236 Query: 279 KSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDME 336 S++I +IAE + AK++P++EDIRDE+ + VRIVL P++ +D D +M +F +D+E Sbjct: 237 PSKVIAQIAEQMNAKKLPMVEDIRDEADHENPVRIVLVPRSNRVDIDAMMAHLFATTDLE 296 Query: 337 TRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIA 396 + +NMN++ + P V L IL EWL+ RR + RR +R+ + R+ IL+GL+IA Sbjct: 297 KSYRVNMNMIGLDHKPAVKNLLEILTEWLSFRRATVTRRLQYRLNKVLARLHILQGLMIA 356 Query: 397 YLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLA 456 +LNIDE+I IIR+ED+PK +++RF+L++ Q +AILNLRLR L KLEE+++++E L Sbjct: 357 FLNIDEVIHIIRHEDEPKAELMARFNLSDEQAEAILNLRLRHLAKLEEHELQAEQTELEK 416 Query: 457 EKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE 516 E+ ++ +L S ++ + EI++ + ++ RR+ E + A KA + M+ Sbjct: 417 ERSSLEEILGSERRLNTLLKKEIQQDAKTYASP-----RRSPLVERAEA-KAIAENEMLP 470 Query: 517 KEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLP 576 EP+TV++S GW+R K H +D L +K GD + + + + + G++Y L Sbjct: 471 TEPVTVILSEMGWVRCAKGHDIDPQGLSYKAGDKYLAHAYGKSNQAAVFIDSTGRSYALD 530 Query: 577 AGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR 636 L S R GE + + L I + + LL+ S G FI + +++IA + Sbjct: 531 PLMLPSARSQGEPLTGKLTLPAGATIDQLLIENEDQPLLMASDAGYGFICKFADLIARNK 590 Query: 637 KGKTFLKVSSEEKM--KLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGKG---VRLQS 691 GK + + K+ L +K + + + ++LIF +PE+S+GKG V + S Sbjct: 591 AGKALISLPENAKVLPPLTLKNSTALLVALTSAGRMLIFPAQDLPELSKGKGNKIVTIPS 650 Query: 692 YKDGGISDVIC--FKICEGLTWIDSAG-RSYNRSENDLLGWLGKRGGVGSLVPKGF 744 S+++ I E + + +G R + DL + +RG G+ +P+G Sbjct: 651 ANAKARSELLVRLLLIEENSSLVFHSGRRKIVLNPEDLQKFRAERGRKGTQLPRGL 706 >gi|145631949|ref|ZP_01787703.1| DNA topoisomerase IV subunit A [Haemophilus influenzae R3021] gi|144982400|gb|EDJ89974.1| DNA topoisomerase IV subunit A [Haemophilus influenzae R3021] Length = 747 Score = 499 bits (1284), Expect = e-139, Method: Compositional matrix adjust. Identities = 277/743 (37%), Positives = 438/743 (58%), Gaps = 26/743 (3%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 E ++ + LR E+ YL Y++ I +RA+P + DG KPV RRI++AMSE+GL+ A +KK Sbjct: 7 EGIEQMPLRTFTEKAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKYKK 66 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTE 133 SAR VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S AA RYTE Sbjct: 67 SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 126 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 +R++++AE++L + + VD++ ++ +EP P++ P++L NGT+GIAVGMAT IP Sbjct: 127 SRLSKIAEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATDIPP 186 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ EI +AA+ L+DNP+ ++ +LE + GPDFPT I+ + I + Y GRG ++R Sbjct: 187 HNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRGSIKMR 246 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRI 311 A W E+ I+++ +P+Q S++I +IA+ + AK++P+LEDIRDE+ + +RI Sbjct: 247 ATWKKED-----GEIIISALPHQSSPSKVIAQIADQMTAKKLPMLEDIRDEADHENPIRI 301 Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371 VL P++ +D D LM +F +D+E + +NMN++ + P V L IL EWL RR Sbjct: 302 VLVPRSNRVDTDALMAHLFATTDLEKSYRVNMNMIGLDHKPAVKGLLEILNEWLTFRRTT 361 Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431 + RR +R+ + R+ IL+GL+IA+LNIDE+I IIR+ED PK ++ RF+L++ Q DAI Sbjct: 362 VTRRLQYRLDKVLSRLHILEGLMIAFLNIDEVIEIIRHEDDPKAELMVRFNLSDEQADAI 421 Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491 LNLRLR L KLEE Q+K+E D L E+ ++++L S ++ I EI+E + ++ Sbjct: 422 LNLRLRHLAKLEENQLKAEQDELEKERLNLEAILGSERRLNTLIKKEIQEDAKKYASP-- 479 Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551 R + E A K + M EP+TV++S GW+R K H +D +L +K GD+ Sbjct: 480 ---RMSQLVEREEA-KMISESDMTPAEPVTVILSEMGWVRCAKGHDIDPKSLSYKAGDNY 535 Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611 + + ++ + + G++Y L +L S R GE + ++L I + Sbjct: 536 RAHACGKSNQAVVFIDSTGRSYALDPLSLPSARSQGEPLTGKLNLPTGATIEYVVMASEQ 595 Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVAVVGENR 668 +LL+ S G FI + ++IA + GK + + K+ K ++ T VA+ R Sbjct: 596 QELLMASDAGYGFICKFEDLIARNKTGKALISLPENAKVLKPKTLINSTALVVAITSAGR 655 Query: 669 KLLIFSIDQIPEMSRGKGVRLQSYKDGGISD-------VICFKICEGLTWIDSAGRSYNR 721 +LIF +P +S+GKG ++ + D ++ L + S R Sbjct: 656 -MLIFPAQDLPVLSKGKGNKMITIPAANAKDRSELLTKLLLISDQASLEFY-SGKRKIVL 713 Query: 722 SENDLLGWLGKRGGVGSLVPKGF 744 DL + +RG GS +P+G Sbjct: 714 KPEDLQKFRAERGRKGSTLPRGL 736 >gi|241764345|ref|ZP_04762373.1| DNA topoisomerase IV, A subunit [Acidovorax delafieldii 2AN] gi|241366301|gb|EER60844.1| DNA topoisomerase IV, A subunit [Acidovorax delafieldii 2AN] Length = 784 Score = 499 bits (1284), Expect = e-139, Method: Compositional matrix adjust. Identities = 262/703 (37%), Positives = 400/703 (56%), Gaps = 46/703 (6%) Query: 19 AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK----- 73 A+ L + YL YALS +K RA+PD+ DG KPV RRI++AM MGL + + Sbjct: 18 ALDLAGYAQRAYLEYALSVVKGRALPDVCDGLKPVQRRILYAMDRMGLGYSGPTRSTAAK 77 Query: 74 --KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131 KSAR+VG+V+G+ HPHGDQS YD+LVR+AQ F QRYPLI GQGNFG+ DGD AAA RY Sbjct: 78 PVKSARVVGDVLGRFHPHGDQSAYDALVRMAQDFAQRYPLIDGQGNFGSRDGDGAAAMRY 137 Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191 TEAR++++ L+L +DE VDF Y+ EP P++ P L NG SGIAVG+AT I Sbjct: 138 TEARLSRITSLLLDEIDEGTVDFMPNYDGSTEEPRQLPARLPFALLNGASGIAVGLATEI 197 Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251 PSHN++EI +A +ALI P +S + LL + GPD+P GG I+ S I ++YR GRG + Sbjct: 198 PSHNLREIADACIALIKTPSLSQDDLLALVPGPDYPGGGQIISSAGDIADAYRTGRGSLK 257 Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAEL------------------IIAK 293 VRARW +E++ RG W +VV E+P V R++E+I E+ + A Sbjct: 258 VRARWKIEDLARGQWQLVVNELPPGVSTQRVLEEIEEITNPKVKAGKKALSQDQTQLKAS 317 Query: 294 RIPLLEDIRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRV 351 + +L+ +RDES++D VR+V PK L+ ++ + +ET P+N+ ++ + Sbjct: 318 MLAVLDVVRDESSKDAPVRLVFEPKTGKTPQQELITALLAHTSLETSAPINLTMVGLDGK 377 Query: 352 PQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED 411 P L +L+EW+A R+ + RRS R+ + R+ IL+G LNIDE+IAIIR + Sbjct: 378 PVQKSLRLMLEEWIAFRQTTITRRSQHRLAKVLDRIHILEGRQTVLLNIDEVIAIIRAAE 437 Query: 412 KPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQ 471 +PK +++RF+L++ Q + IL +RLR L +LE +I+ EL L + K++ +LN Sbjct: 438 EPKAALIARFNLSDRQAEDILEIRLRQLARLEAIKIEQELKELRESQGKLEDILN----- 492 Query: 472 WNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR 531 N + VKEI + + R T + A+K + + + EP+TV++S +GW+R Sbjct: 493 -NPGSLRRTMVKEIEADAKTFADARRTLIQ---AEKKAVAEVKVVDEPVTVIVSQKGWVR 548 Query: 532 SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ 591 + H + ++ FK GD L T D+++ ++G+ Y++P L GRG G+ + Sbjct: 549 ARTGHGHEAASFAFKAGDGLYATFECRTVDQLIGFGSNGRVYSVPVAQLPGGRGDGQPVT 608 Query: 592 LLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK 651 LI+L ++ F ++ LL+ +S G F+ +++ + GK FL + E + Sbjct: 609 TLIELESGTQLLHYFAGPASATLLLSNSGGYGFLASVENLVSRQKGGKAFLTLGEGETVC 668 Query: 652 LVVKVTGD----------HVAVVGENRKLLIFSIDQIPEMSRG 684 G HVA ++L F I ++ M+ G Sbjct: 669 PPSHAAGSTGAQPLPPATHVACASAGGRILTFEISELKTMANG 711 >gi|33596502|ref|NP_884145.1| DNA topoisomerase IV subunit A [Bordetella parapertussis 12822] gi|33566271|emb|CAE37182.1| topoisomerase IV subunit A [Bordetella parapertussis] Length = 771 Score = 499 bits (1284), Expect = e-139, Method: Compositional matrix adjust. Identities = 273/745 (36%), Positives = 427/745 (57%), Gaps = 41/745 (5%) Query: 18 KAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSAR 77 +A++L E+ YL YA+S ++ RA+PD+ DG KPV RRI++AM MGL GA KSAR Sbjct: 19 EAITLGRYAEQAYLDYAVSVVRGRALPDVGDGQKPVQRRILYAMQAMGLAAGAKPVKSAR 78 Query: 78 IVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMT 137 +VG+V+GK HPHGDQ+ YD++VR+AQ F RYPLI G GNFG+ DGD+AAA RYTEAR+T Sbjct: 79 VVGDVLGKYHPHGDQAAYDAMVRMAQDFSLRYPLIDGHGNFGSRDGDNAAAMRYTEARLT 138 Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197 ++L+L ++E VDF Y+ EP + P++ P +L NG SGIAVGMAT IPSHN++ Sbjct: 139 PFSKLLLDELEEGTVDFVPNYDGSQQEPAMLPARLPVMLLNGASGIAVGMATEIPSHNLR 198 Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257 E+ +A +ALI NP++ E+LL + GPDF GG I+ I + Y GRG + RARW Sbjct: 199 EVAQACVALIRNPKLPQEELLALVPGPDFAGGGQIITPAADIAQIYATGRGSLKARARWQ 258 Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAK------------------RIPLLE 299 EE+ RG W +VVTE+P +++E+I E+ K + LL+ Sbjct: 259 FEEMARGQWQLVVTELPPGTSGQKVLEEIEEITNPKVRAGKKSLSAEQQQAKAVMLSLLD 318 Query: 300 DIRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPL 357 +RDES +D VR+V PK +D D + ++ + ME+ P+N+ + P+ L Sbjct: 319 AVRDESGKDAAVRLVFEPKTSRVDRDEFVNTLLAQTSMESNVPVNVVCIGTDGRPRQKSL 378 Query: 358 DGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM 417 +L+EW+A R + + RR+ R+ + R+ +L+G ++ YLN+DE+I IR ++P+ + Sbjct: 379 RDVLEEWVAFRTDTVVRRTRHRLDKVLDRIHVLEGRMVVYLNVDEVIQTIREAEEPRAAL 438 Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477 ++RF LTE Q + IL +RLR L +LE +I+ EL E+ ++ LL+ N + Sbjct: 439 MARFGLTERQAEDILEMRLRQLARLEGIKIEQELAGKREEQLRLQDLLD------NPGSL 492 Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHS 537 + +KEI + G R T E A++A L+ +++ EP+TV++S +GW+R+ + H Sbjct: 493 KRLLIKEIEGDAKQYGDDRRTLIET--AERAVLETKVVD-EPVTVIVSQKGWLRARQGHG 549 Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLN 597 D FK+GD L A TTD ++ + +G+ Y++ L S RG G+ + +IDL Sbjct: 550 HDAGQFSFKQGDDLYGAFECRTTDTLIAVGDNGRVYSVAVSGLPSARGDGQPVTTMIDLE 609 Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV-SSEEKMKLVVKV 656 IV S + L+ + +G F S++ + R GK F+ + +E ++ V Sbjct: 610 AGTRIVHTIAAASDSRWLLATRRGFGFAARLSDMSSRQRAGKQFITLEKGDELLRPVPLF 669 Query: 657 TG-DHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDS 714 G +A++ K L+F +D++ +S G+G L +D + + G + + Sbjct: 670 EGATQLALLSAKGKFLVFGLDEVKSLSGGGRGTILMGLD---TADKLDQTVPIGAAGLRA 726 Query: 715 AGRSYNRSENDLLG------WLGKR 733 AG N+ D+L ++GKR Sbjct: 727 AGIYRNKQTEDILAGAALAPYVGKR 751 >gi|170728513|ref|YP_001762539.1| DNA topoisomerase IV subunit A [Shewanella woodyi ATCC 51908] gi|169813860|gb|ACA88444.1| DNA topoisomerase IV, A subunit [Shewanella woodyi ATCC 51908] Length = 758 Score = 499 bits (1284), Expect = e-139, Method: Compositional matrix adjust. Identities = 272/755 (36%), Positives = 445/755 (58%), Gaps = 27/755 (3%) Query: 6 ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65 +S++ L + V+ + +R E+ YL Y++ I +RA+P + DG KPV RRII+AMSE+G Sbjct: 1 MSDAIDLSLDGVEQMPMRRFTEDAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELG 60 Query: 66 LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124 L + KKSAR VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D Sbjct: 61 LTSQSKHKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPK 120 Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184 S AA RYTEAR+++ +E++L + + VD+ ++ EP+V PS+ P++L NG +GIA Sbjct: 121 SFAAMRYTEARLSKFSEVLLSELGQGTVDWGVNFDGTMKEPLVLPSRLPHILLNGITGIA 180 Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244 VGMAT +P HN +E+ A + L+DNP+ + +++E++ GPD+PT I+ IV+ Y Sbjct: 181 VGMATDVPPHNTRELVSACIELLDNPKAELAEIMEHVPGPDYPTEAEIITPAADIVKIYT 240 Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304 GRG + RA + VE + IV+T +P+Q +++E+IA + AK++P++ D+RDE Sbjct: 241 TGRGSIKARAVYAVE-----NGEIVITALPHQASGGKILEQIAAQMQAKKLPMVVDLRDE 295 Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362 S + VRIV+ P++ +D D +M +F +D+E F +N+N+L + PQV L IL Sbjct: 296 SDHESPVRIVIVPRSNRIDCDQVMAHLFATTDLEKSFRVNLNILGLNGRPQVKGLLQILN 355 Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422 EWL +R + + RR +R+ I R+ IL L+IA+LNIDE+I IIR E+ PK ++SR++ Sbjct: 356 EWLEYRFQTVTRRVQYRLDKILARLHILDALMIAFLNIDEVIEIIRYEEDPKAELMSRYN 415 Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482 L++ Q DAIL+L+LR L KLEE++IK+E L AE++K+ LL+S ++ I E+++ Sbjct: 416 LSDKQADAILDLKLRHLAKLEEFKIKTEQSELEAERDKLQLLLSSDRRMKTLIKKELKQD 475 Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542 E + RR+ E S + KA + + E +TVV+S +GW+R K H +D A Sbjct: 476 AETYGDD-----RRSPLIERSES-KALTEHELAPVEAVTVVLSEKGWVRCAKGHDIDAKA 529 Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602 L +K GDS + + + + + G+A+ L S R GE I +L+ + + Sbjct: 530 LSYKAGDSFLCSATGRSNQPSVFIGSTGRAFATETHTLPSARSQGEPITTRFNLSPGEIM 589 Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGD 659 + D L+ S G F+ ++I+ + GK L + + K+ KLV + + Sbjct: 590 EHVLLGDEDKYYLLASDAGYGFVGSYKDMISRNKAGKALLTLPANSKVISPKLVDRSRPE 649 Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGK--------GVRLQSYKDGGISDVICFKICEGLTW 711 + + ++L+FS++ +P++S+GK G R ++ ++ I + + W Sbjct: 650 SILAITNEGRMLLFSMEALPQLSKGKGNKIIGIPGERAKAREELLIHLYVVPEDTSVTLW 709 Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746 + R +DL + G+RG G+ +P+G R Sbjct: 710 --AGKRKLTLKPSDLEHYRGERGRRGAKLPRGLQR 742 >gi|71274853|ref|ZP_00651141.1| Gram negative topoisomerase IV, subunit A [Xylella fastidiosa Dixon] gi|170729899|ref|YP_001775332.1| DNA topoisomerase IV subunit A [Xylella fastidiosa M12] gi|71164585|gb|EAO14299.1| Gram negative topoisomerase IV, subunit A [Xylella fastidiosa Dixon] gi|167964692|gb|ACA11702.1| topoisomerase IV subunit A [Xylella fastidiosa M12] Length = 749 Score = 499 bits (1284), Expect = e-139, Method: Compositional matrix adjust. Identities = 275/737 (37%), Positives = 426/737 (57%), Gaps = 23/737 (3%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 + LR E YL Y++ + +RA+P + DG KPV RRII+AM E+ L+ A KKS R V Sbjct: 15 MPLREYAERAYLDYSMYVVLDRALPFIGDGLKPVQRRIIYAMHELRLNPKAKPKKSVRAV 74 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQ 138 G+VIGK HPHGD + Y++LV +AQPF RYPLI GQGNFG+ D S AA RYTE+++T Sbjct: 75 GDVIGKYHPHGDLACYEALVLMAQPFSYRYPLIEGQGNFGSSDDPKSFAAMRYTESKLTP 134 Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198 ++E++L + E V++ ++ EP PS+ P+LL NGT+GIAVGMAT +P HN+ E Sbjct: 135 ISEILLSELSEGTVNWITNFDGTLEEPAWLPSRLPHLLLNGTTGIAVGMATDVPPHNLNE 194 Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258 I A + L+DNP +I L +YI GPD+PT I+ + Y G G R RA + Sbjct: 195 ITSALIHLLDNPNATIAALCQYIRGPDYPTAAEIITPPSDLQNLYETGNGSVRTRATYHK 254 Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLL--EDIRDES--AEDVRIVLF 314 E+ +V+T +PYQV S++IE+IA+ I +K++P L E +RDES VRIVLF Sbjct: 255 ED-----GNVVITSLPYQVSPSKVIEQIAQQIRSKKLPWLDGEGVRDESDHKNPVRIVLF 309 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 P+++ +D + LM +F +D+E +N+NV+ + PQV PL +L EWL+ R + + R Sbjct: 310 PRSQRIDVEQLMGHLFATTDLEKSHRVNLNVIGLDGRPQVKPLKQLLSEWLSFRSDTVTR 369 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNL 434 R +R+Q ++ R+ +L+GLLI +LN+D++I IIRNED+PKPV+++RF L++ Q + IL+ Sbjct: 370 RLKYRLQKVENRLHLLEGLLITFLNLDKVIHIIRNEDEPKPVLIARFGLSDAQTEYILDT 429 Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494 +LR L +LEE I+SE D L E+++I+ +L+S Q I E+ + + G Sbjct: 430 KLRQLARLEEMAIRSEQDALTKERDEINVILDSDVQLKKLIK------DELLADAKTFGD 483 Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIA 554 R +A +A + ++ EP+TVV+S +GWIR+ K H VD S + ++EGD L A Sbjct: 484 ARRAPLVARQAAQAIDESELVASEPMTVVLSEKGWIRAAKGHDVDPSGMSYREGDRLLAA 543 Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKL 614 + +T ++ L ++G+AY+ L S RG+GE + D+ Sbjct: 544 VRTRSTHQVSFLDSEGRAYSTLVHTLPSARGNGEPLTGRFSPAPGASFQAMASADNDKLF 603 Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGDHVAVVGENRKLL 671 ++ SS G FI + + GK + ++ + + + V D + V LL Sbjct: 604 VLASSHGYGFITRFENLTGRNKAGKAMIHLTPGAQVMGLAPLTDVQHDRIVAVTSAGNLL 663 Query: 672 IFSIDQIPEMSRGKGVRLQSYKDGGISD---VICFKICEGLTWIDSAG-RSYNRSENDLL 727 + ++PE+ +GKG +L ++ V + T + +G R+ + S DL Sbjct: 664 AIAASELPELDKGKGNKLIDIPKTKLATERLVAVIAVASSHTLLLYSGERTMHLSFKDLE 723 Query: 728 GWLGKRGGVGSLVPKGF 744 +L RG G L+P+ + Sbjct: 724 AYLDTRGSRGQLLPRSW 740 >gi|145634902|ref|ZP_01790609.1| DNA topoisomerase IV subunit A [Haemophilus influenzae PittAA] gi|145267768|gb|EDK07765.1| DNA topoisomerase IV subunit A [Haemophilus influenzae PittAA] Length = 747 Score = 498 bits (1283), Expect = e-138, Method: Compositional matrix adjust. Identities = 277/743 (37%), Positives = 437/743 (58%), Gaps = 26/743 (3%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 E ++ + LR E+ YL Y++ I +RA+P + DG KPV RRI++AMSE+GL+ A +KK Sbjct: 7 EGIEQMPLRTFTEKAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKYKK 66 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTE 133 SAR VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S AA RYTE Sbjct: 67 SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 126 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 +R+++++E++L + + VD++ ++ +EP P++ P++L NGT+GIAVGMAT IP Sbjct: 127 SRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATDIPP 186 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ EI +AA+ L+DNP+ ++ +LE + GPDFPT I+ + I + Y GRG ++R Sbjct: 187 HNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRGSIKMR 246 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRI 311 A W E+ I+++ +P+Q S++I +IA+ + AK++P+LEDIRDE+ + +RI Sbjct: 247 ATWKKED-----GEIIISALPHQSSPSKVIAQIADQMTAKKLPMLEDIRDEADHENPIRI 301 Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371 VL P++ +D D LM +F +D+E + +NMN++ + P V L IL EWL RR Sbjct: 302 VLVPRSNRVDTDALMAHLFATTDLEKSYRVNMNMIGLDHKPAVKGLLEILNEWLTFRRTT 361 Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431 + RR +R+ + R+ IL+GL+IA+LNIDE+I IIR ED PK +++RF+L++ Q DAI Sbjct: 362 VTRRLQYRLDKVLSRLHILEGLMIAFLNIDEVIEIIRQEDDPKAELMARFNLSDEQADAI 421 Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491 LNLRLR L KLEE Q+K+E D L E+ ++++L S ++ I EI+E + ++ Sbjct: 422 LNLRLRHLAKLEENQLKAEQDELEKERLNLEAILGSERRLNTLIKKEIQEDAKKYTSP-- 479 Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551 R + E A K + M EP+TV++S GW+R K H +D +L +K GDS Sbjct: 480 ---RMSQLVEREEA-KMISESDMTPAEPVTVILSEMGWVRCAKGHDIDPKSLSYKAGDSY 535 Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611 + ++ + + G++Y L +L S R GE + ++L I + Sbjct: 536 LAHACGKSNQAVVFIDSTGRSYALDPLSLPSARSQGEPLTGKLNLPTGATIEYVVMASEQ 595 Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVAVVGENR 668 +LL+ S G FI + ++IA + GK + + K+ K ++ T VA+ R Sbjct: 596 QELLMASDAGYGFICKFEDLIARNKAGKALISLPENAKVLKPKTLINSTALVVAITSAGR 655 Query: 669 KLLIFSIDQIPEMSRGKGVRLQSYKDGGISD-------VICFKICEGLTWIDSAGRSYNR 721 +LIF +P +S+GKG ++ + D ++ L + S R Sbjct: 656 -MLIFPAQDLPVLSKGKGNKMITIPAANAKDRSELLTKLLLISDQASLEFY-SGKRKIVL 713 Query: 722 SENDLLGWLGKRGGVGSLVPKGF 744 DL + +RG GS +P+G Sbjct: 714 KPEDLQKFRAERGRKGSTLPRGL 736 >gi|226939028|ref|YP_002794099.1| DNA topoisomerase IV subunit A [Laribacter hongkongensis HLHK9] gi|226713951|gb|ACO73089.1| ParC [Laribacter hongkongensis HLHK9] Length = 760 Score = 498 bits (1283), Expect = e-138, Method: Compositional matrix adjust. Identities = 279/755 (36%), Positives = 428/755 (56%), Gaps = 45/755 (5%) Query: 19 AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78 ++ L E YL YA+S +K RA+P++ DG KPV RRI++AM EMGL GA KSAR+ Sbjct: 10 SLPLDLYAERAYLEYAMSVVKGRALPEVADGQKPVQRRILYAMKEMGLAAGAKPVKSARV 69 Query: 79 VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138 VGE++GK HPHGD S Y++LVR+AQ F RYPLI GQGNFG+ DGD AAA RYTEAR+T Sbjct: 70 VGEILGKYHPHGDSSAYEALVRMAQDFTLRYPLIDGQGNFGSRDGDGAAAMRYTEARLTP 129 Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198 +A+L+L +D+ VDF Y+ EP + P++ P +L NG SGIAVGMAT IP HN+ E Sbjct: 130 IADLLLAEIDQGTVDFVPNYDGAFDEPRLLPARLPMVLLNGASGIAVGMATEIPPHNLTE 189 Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258 + AA+AL+ +P + L+ Y+ GPDFP GG I+ + + I +Y GRG RVRA+W V Sbjct: 190 VAAAAVALLKDPALDTAGLMTYLPGPDFPGGGRIITASDDIRAAYESGRGSVRVRAQWEV 249 Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAK------------------RIPLLED 300 E++ RG W ++V+E+P +++ +I + K + L+ Sbjct: 250 EKLARGQWRVIVSELPPGSSAQKVLAEIEDATNPKPRAGKKALSQEQQNLKNLMLSQLDR 309 Query: 301 IRDES--AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLD 358 +RDES VR+V PK+ L+PD M + + ME +N+ ++ M PQ L Sbjct: 310 VRDESDGEHPVRLVFEPKSSRLNPDEFMTLLLAQTSMEQNVSMNLVMVGMDGRPQQKGLK 369 Query: 359 GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV 418 IL EWL R + RR + R+ +++R+ IL+G + +L++D +I +IR D+PKP ++ Sbjct: 370 AILSEWLGFRETTVTRRLAHRLDKVEQRIHILEGRQLVFLSLDAVIRVIRESDEPKPELM 429 Query: 419 SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE 478 + F L+E Q + IL +RLR L +LE ++++ EL L E + LL S + I Sbjct: 430 AAFGLSEIQAEDILEIRLRQLARLEGFRLEKELGELRDEAGGLRHLLASDHARQKLI--- 486 Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV 538 +KEI + + G RR + E+ A+KATL Q + EP+T+++S +GW+R+ H V Sbjct: 487 ---IKEIEADAAKYGDRRRS--ELKPAEKATLTQT-VADEPVTLILSKKGWLRARVGHHV 540 Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNH 598 DL+ L FK+GD+L L T +++L + G+AYT+ A ++ +GRG G + LID+ Sbjct: 541 DLATLAFKDGDALAAVLETRTVWPVVVLDSHGRAYTVDAADVPTGRGDGVPVTSLIDVQE 600 Query: 599 NQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG 658 + + +V S G F+VE ++++ + GK FL + + E V VT Sbjct: 601 QAQVCHMLAAPEDARFVVAGSGGYGFVVEMKDMVSRVKAGKAFLTLEAHEIPLAPVPVTA 660 Query: 659 DHVA-----VVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICF------KICE 707 +A + + + L+F ++ +++G+G+ L DG + + +IC Sbjct: 661 AGLAAGQLVAISQQARALVFPASELKALAKGRGLMLMQLDDGDTLETLAVVEGSAARICG 720 Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPK 742 L GR + + + GKR G L+PK Sbjct: 721 TL----RTGRE-DSFRLEFADYAGKRAKKGKLLPK 750 >gi|307824022|ref|ZP_07654249.1| DNA topoisomerase IV, A subunit [Methylobacter tundripaludum SV96] gi|307734806|gb|EFO05656.1| DNA topoisomerase IV, A subunit [Methylobacter tundripaludum SV96] Length = 743 Score = 498 bits (1283), Expect = e-138, Method: Compositional matrix adjust. Identities = 274/746 (36%), Positives = 443/746 (59%), Gaps = 22/746 (2%) Query: 12 LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71 +++ N + + L+ E+ YL Y++ I +RA+P++ DG KPV RRI++AMSE+GL A Sbjct: 2 IMQGNFEQLPLKDFAEKAYLDYSMYVILDRALPNIADGLKPVQRRIVYAMSELGLTATAK 61 Query: 72 FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYR 130 FKKSAR VG+V+GK HPHGD + Y+++V +AQ F RYPL+ GQGN+G+ D S AA R Sbjct: 62 FKKSARTVGDVLGKYHPHGDSACYEAMVLMAQDFSYRYPLVDGQGNWGSPDDPKSFAAMR 121 Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190 YTE+R+T A+ +L + + VD+ D ++ EPV+ P++ PN+L NGT GIAVGMAT Sbjct: 122 YTESRLTAYAQTLLSELGQGTVDWADNFDATLKEPVLLPARLPNILLNGTMGIAVGMATD 181 Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250 IP HN++E+ A + L+D+P +++ L +I GPD+PT I+ S E I + Y G G Sbjct: 182 IPPHNLREVANACIQLLDDPNSTLDMLFTHIKGPDYPTDAEIITSAEDIQKMYVSGGGSI 241 Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-- 308 ++RA++ E+ IV+T +P+QV ++L+E+IA ++AK++P++ED+RDES + Sbjct: 242 KMRAKYEQED-----GNIVITALPHQVSGAKLLEQIAAQMLAKKLPMIEDLRDESDHENP 296 Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368 R+++ P+++ +D D +M +F +D+E + +NMN++ + P+V L IL EWLA R Sbjct: 297 TRLLVIPRSKRIDADEVMSHLFATTDLEKSYRVNMNMIGLDGRPKVKGLRDILVEWLAFR 356 Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQV 428 E + +R +R+ + R+ IL GLLIAYLNIDE+IAIIR+ED PKPV++ RF +T+ Q Sbjct: 357 TETVRKRLQYRLDKVLARLHILDGLLIAYLNIDEVIAIIRSEDHPKPVLMERFGITDIQT 416 Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488 +AIL L+LR L KLEE +I+ E D L E+ ++ L S + N++ IR KE+ Sbjct: 417 EAILELKLRHLAKLEEMKIRGEQDELELERAALEKTLGSPR-LLNRL---IR--KELERD 470 Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548 + G R + A +A A+I EP+TV++S +GWIR+ K H +D+++L+++ G Sbjct: 471 AEKYGDDRRSPIVARDAAQALETTALITNEPLTVILSEKGWIRAAKGHDIDVASLNYRSG 530 Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608 D A+ TT + +L + G+AY+ +L S R GE + ++ + Sbjct: 531 DGFLDAVKCRTTQPVYILDSTGRAYSTATHDLPSARTQGEPLTGRLNPPPGSLFLHLLAG 590 Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--KLVVKVTGDHVAVVGE 666 ++ S G F V+ E+++ + GK + + K+ ++ D +AVV Sbjct: 591 QPDDWYVLASHFGYGFRVQLKELLSKNKAGKLLITLPDGAKVLKPTPIRSEADSLAVVTL 650 Query: 667 NRKLLIFSIDQIPEMSRGKGVRLQSYKDGGIS---DVICFKIC---EGLTWIDSAGRSYN 720 +LLIF + ++P +++GKG +L ++ D + + G I + R Sbjct: 651 QGRLLIFPVAELPALAKGKGNKLIQIPTADLTAGKDYVIAAVALPENGQLKIIAGKRQLT 710 Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPR 746 D+ + R G +P+GF R Sbjct: 711 LKGADVEHYSAGRAKRGLALPRGFQR 736 >gi|134288295|ref|YP_001110458.1| DNA topoisomerase IV subunit A [Burkholderia vietnamiensis G4] gi|134132945|gb|ABO59655.1| DNA topoisomerase IV subunit A [Burkholderia vietnamiensis G4] Length = 808 Score = 498 bits (1282), Expect = e-138, Method: Compositional matrix adjust. Identities = 264/684 (38%), Positives = 394/684 (57%), Gaps = 29/684 (4%) Query: 27 EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86 E YL YA+S ++ R +PD+ DG KPV RR+++AM++MGL A KSAR+VG+V+GK Sbjct: 64 ERAYLDYAMSVVRGRTLPDVEDGQKPVQRRLLYAMNDMGLTATAKPVKSARVVGDVLGKY 123 Query: 87 HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQG 146 HPHGDQS YD+LVRLAQ F RYPLI GQGNFG+ DGD AAA RYTEAR+T A+L+L Sbjct: 124 HPHGDQSAYDALVRLAQDFSMRYPLIDGQGNFGSRDGDGAAAMRYTEARLTPFADLLLAE 183 Query: 147 VDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALAL 206 +D+ VDF+ Y+ EP + P++ P LL NG SGIAVGMAT IPSHN++E+ +A L Sbjct: 184 IDQGTVDFQPNYDGAFEEPSLLPARLPVLLLNGASGIAVGMATDIPSHNLREVADACSLL 243 Query: 207 IDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSW 266 I P+ + ++ + GPD+P G I+ I + Y GRG RVRARW +E++ RG W Sbjct: 244 IRRPDATFGDVMSVLPGPDYPGGAQIISDIADIHKVYEGGRGSLRVRARWSLEQLARGQW 303 Query: 267 CIVVTEIPYQVQKSRLIEKIAELIIAK------------------RIPLLEDIRDESAED 308 I VTE+P+ V +++E+I EL K + +L+ +RD+S E Sbjct: 304 QIAVTELPHGVSTQKVLEEIEELTNPKIKAGKKALTQEQGNMKALLLSVLDSVRDDSDEK 363 Query: 309 --VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366 VRIV P + P+ LM + + +E +N+ + + PQ + L EW+ Sbjct: 364 HPVRIVFEPHSSRQTPEQLMNVLLAHTSLECNASVNLVTIGLDGRPQQKGIVPALTEWVE 423 Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426 R + RR+ R+ ++RR+ IL G +IA+LNID++I +IR D+PK +++ F L+E Sbjct: 424 FRYRTVTRRTEHRLAEVERRIHILDGRMIAFLNIDQVIKVIRESDEPKRDLIATFHLSEV 483 Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486 Q + IL +RLR L +LE +I+ EL L E+ + SLL NQI EI K+ F Sbjct: 484 QAEDILEIRLRQLARLEGIKIEKELAQLQDEQRHLQSLLADRAAMTNQILKEIEADKQKF 543 Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAM-IEKEPITVVISNRGWIRSLKSHSVDLSALHF 545 G R T E A+K T + +P+T+++S GW+R+ H +D+S L F Sbjct: 544 ------GDDRRTLIE--SAEKVTSGAVVPTADDPVTIIVSRSGWLRARSGHGIDISTLTF 595 Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605 K GD L ++ T+ + + T+G+ Y + + + +GRG G + LI+L + Sbjct: 596 KAGDDLLASIETRTSTSLAVFDTNGRCYNVASALIPTGRGDGVPLTSLIELQGGGRLTHV 655 Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVG 665 V D T L+ SS G ++ ++++ + GK F + E M K+ GD V+ V Sbjct: 656 IVIDQTANYLIASSGGYGYVCAGADLLTRQKAGKAFATLEPGEVMHPPAKIAGDTVSAVC 715 Query: 666 ENRKLLIFSIDQIPEMSRGKGVRL 689 +L++F + ++ M +GKGV+L Sbjct: 716 SGGRLVLFPLSEVKVMPKGKGVKL 739 >gi|291615237|ref|YP_003525394.1| DNA topoisomerase IV, A subunit [Sideroxydans lithotrophicus ES-1] gi|291585349|gb|ADE13007.1| DNA topoisomerase IV, A subunit [Sideroxydans lithotrophicus ES-1] Length = 790 Score = 498 bits (1282), Expect = e-138, Method: Compositional matrix adjust. Identities = 269/694 (38%), Positives = 409/694 (58%), Gaps = 36/694 (5%) Query: 27 EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86 E YL YA+S +K RA+P++ DG KPV RRI++AM +MGL G KSAR+VG+V+GK Sbjct: 50 ERAYLEYAVSVVKGRALPEVCDGQKPVQRRILYAMRQMGLTHGNKHVKSARVVGDVLGKY 109 Query: 87 HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQG 146 HPHGD S Y+++VRLAQ F RYPL+ GQGNFG+ DGD+AAA RYTEAR+T +A+L+L Sbjct: 110 HPHGDSSAYEAMVRLAQDFAMRYPLVDGQGNFGSRDGDNAAAMRYTEARLTPIADLLLSE 169 Query: 147 VDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALAL 206 +D VDF Y+ EP + P++ P +L NG SGIAVGMAT IPSHN++E+ +AA+AL Sbjct: 170 LDMGTVDFIPNYDGAFQEPAMLPARLPMVLLNGASGIAVGMATEIPSHNLKEVAKAAVAL 229 Query: 207 IDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSW 266 NP + +KLL YI GPDFP GG I+ S I ++Y GRG ++RARW +E++ RG W Sbjct: 230 AKNPNVKDDKLLSYISGPDFPGGGQIISSAADIRDAYASGRGSLKMRARWSIEQLARGQW 289 Query: 267 CIVVTEIPYQVQKSRLIEKIAELIIAKR------------------IPLLEDIRDES--A 306 +VV+E P+ V +++E+I EL K + +L+ + DES + Sbjct: 290 QVVVSEFPHGVSAQKVLEEIDELTNPKVKANKKSLTPEQTQNKQLILSVLDAVADESDKS 349 Query: 307 EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366 + R+V PK+ PD +M + + ++ +N+ ++ + PQ L +L+EW+ Sbjct: 350 QKTRLVFQPKSSKQSPDDMMAVLLTHTSLQNSVSVNLTMIGLDGRPQQKALTQVLREWVE 409 Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426 R + RR +R+ ++ R+ IL G +I YLNIDE+I +IRN D PK ++ +F L+E Sbjct: 410 FRLRTVTRRCDYRLGQVNDRLHILAGRMIVYLNIDEVIKVIRNSDAPKEDLMKKFDLSER 469 Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE--VKE 484 Q + IL +RLR L +LE +I+ E+ L AE +++ +L S + +RE V E Sbjct: 470 QAEDILEIRLRQLARLEGIKIEREIKELKAEAKELKRVLGSEE--------ALRELVVGE 521 Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH 544 I + + G R T E ++ K T Q + EP+TV IS R W+R+ H +D SA+ Sbjct: 522 IEADAKQYGDERRTLIEEAQITKVTAQ---VSDEPVTVFISQRFWVRTRLGHGIDASAIA 578 Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVT 604 FK+GDS+ TTD+ +++ ++G+ ++P L +GRG G + I+L I Sbjct: 579 FKDGDSIAATYECRTTDQCIVICSNGRVCSIPVSALPTGRGDGAPLATFIELAPGAKIAH 638 Query: 605 AFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH--VA 662 AF + +L+ +S G F +++ + GK F+ V E + V+ H VA Sbjct: 639 AFCGKTETPVLISTSAGYGFPCFIGDMVGRNKAGKQFISVKEETILPPVLLAPTQHSLVA 698 Query: 663 VVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDG 695 + +N +LL+F + ++ + GKG+ L K+G Sbjct: 699 ALSKNARLLVFVLSELKLLQGGGKGMMLIDLKEG 732 >gi|260583322|ref|ZP_05851096.1| DNA topoisomerase IV, A subunit [Haemophilus influenzae NT127] gi|260093635|gb|EEW77549.1| DNA topoisomerase IV, A subunit [Haemophilus influenzae NT127] Length = 747 Score = 498 bits (1281), Expect = e-138, Method: Compositional matrix adjust. Identities = 278/743 (37%), Positives = 437/743 (58%), Gaps = 26/743 (3%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 E ++ + LR E+ YL Y++ I +RA+P + DG KPV RRI++AMSE+GL+ A +KK Sbjct: 7 EGIEQMPLRTFTEKAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKYKK 66 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTE 133 SAR VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S AA RYTE Sbjct: 67 SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 126 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 +R++++AE++L + + VD++ ++ +EP P++ P++L NGT+GIAVGMAT IP Sbjct: 127 SRLSKIAEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATDIPP 186 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ EI +AA+ L+DNP+ ++ +LE + GPDFPT I+ + I + Y GRG ++R Sbjct: 187 HNINEIADAAVMLLDNPKAKLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRGSIKMR 246 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRI 311 A W E+ I+++ +P+Q S++I +IA+ + AK++P+LEDIRDE+ + +RI Sbjct: 247 ATWKKED-----GEIIISALPHQSSPSKVIAQIADQMTAKKLPMLEDIRDEADHENPIRI 301 Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371 VL P++ +D D LM +F +D+E + +NMN++ + P V L IL EWL RR Sbjct: 302 VLVPRSNRVDTDALMAHLFATTDLEKSYRVNMNMIGLDHKPAVKGLLEILNEWLTFRRTT 361 Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431 + RR +R+ + R+ IL+GL+IA+LNIDE+I IIR+ED PK ++ RF+L++ Q DAI Sbjct: 362 VTRRLQYRLDKVLSRLHILEGLMIAFLNIDEVIEIIRHEDDPKAELMVRFNLSDEQADAI 421 Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491 LNLRLR L KLEE Q+K+E D L E+ ++++L S ++ I EI+E + ++ Sbjct: 422 LNLRLRHLAKLEENQLKAEQDELEKERLNLEAILGSERRLNTLIKKEIQEDAKKYASP-- 479 Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551 R + E A K + M EP+TV++S GW+R K H +D +L +K GDS Sbjct: 480 ---RMSQLVEREEA-KMISESDMTPAEPVTVILSEMGWVRCAKGHDIDPKSLSYKAGDSY 535 Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611 + ++ + + G++Y L +L S R GE + ++L I + Sbjct: 536 LAHACGKSNQAVVFIDSTGRSYALDPLSLPSARSQGEPLTGKLNLPTGATIEYVVMASEQ 595 Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVAVVGENR 668 +LL+ S G FI + ++IA + GK + + K+ K ++ T VA+ R Sbjct: 596 QELLMASDAGYGFICKFEDLIARNKAGKALISLPENAKVLKPKTLINSTALVVAITSAGR 655 Query: 669 KLLIFSIDQIPEMSRGKGVRLQSYKDGGISD-------VICFKICEGLTWIDSAGRSYNR 721 +LIF +P +S+GKG ++ + D ++ L + S R Sbjct: 656 -MLIFPAQDLPVLSKGKGNKMITIPAANAKDRSELLTKLLLISDQASLEFY-SGKRKIVL 713 Query: 722 SENDLLGWLGKRGGVGSLVPKGF 744 DL + +RG GS +P+G Sbjct: 714 KPEDLQKFRTERGRKGSTLPRGL 736 >gi|209516132|ref|ZP_03264991.1| DNA topoisomerase IV, A subunit [Burkholderia sp. H160] gi|209503416|gb|EEA03413.1| DNA topoisomerase IV, A subunit [Burkholderia sp. H160] Length = 773 Score = 498 bits (1281), Expect = e-138, Method: Compositional matrix adjust. Identities = 277/691 (40%), Positives = 414/691 (59%), Gaps = 32/691 (4%) Query: 27 EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86 E YL YA+S +K RA+PD+ DG KPV RRI+ AM+EMGL A KSAR+VG+V+GK Sbjct: 27 ERAYLEYAVSVVKGRALPDVCDGQKPVQRRILFAMNEMGLGDNAKPVKSARVVGDVLGKY 86 Query: 87 HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQG 146 HPHGDQS YD+LVRLAQ F RYPLI GQGNFG+ DGD AAA RYTEAR+T +A+L+L Sbjct: 87 HPHGDQSAYDALVRLAQDFSMRYPLIDGQGNFGSRDGDGAAAMRYTEARLTPIAKLLLGE 146 Query: 147 VDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALAL 206 +D+ VDF Y+ EP V P++ P +L NG SGIAVG+AT IPSHN++E+ AA+AL Sbjct: 147 IDQGTVDFMPNYDGSFEEPKVLPARLPFVLLNGASGIAVGLATEIPSHNLREVAGAAVAL 206 Query: 207 IDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSW 266 I +P++S +L++++ GPDFP GG I+ S I +Y GRG +VRARW +E++ RG W Sbjct: 207 IRHPKLSHAELMQHVPGPDFPGGGQIISSEAEIAAAYETGRGSLKVRARWKIEDLARGQW 266 Query: 267 CIVVTEIPYQVQKSRLIEKIAELIIAK------------------RIPLLEDIRDESAED 308 +V+TE+P +++E+I E I K + L++ +RDES +D Sbjct: 267 QLVITELPPNTAAQKVLEEIEEQINPKIKLGKKALTPEQLQTKQTLLGLVDAVRDESGKD 326 Query: 309 --VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366 VR+V PK+ +D + ++ + +E+ PLNM ++ P+ L IL EW+A Sbjct: 327 APVRLVFEPKSSRIDQTEFVNTLLAHTSLESNAPLNMVMVGGDGRPRQKGLSEILHEWIA 386 Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426 R + RR+ R+ +D R+ IL+G +I +LNIDE+I IIR D+PK +++ F LT+ Sbjct: 387 FRFTTVTRRTRHRLSKVDDRIHILEGRMIVFLNIDEVIRIIRESDEPKVALMAAFGLTDR 446 Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486 Q + IL +RLR L +LE+ +I+ EL L EK K++ LL S Q+ +KEI Sbjct: 447 QAEDILEIRLRQLARLEKIKIEKELAELREEKAKLEELLGSESAMKRQL------IKEIE 500 Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546 + + G R T + + +AT +A + EP+TVV+S +GW+R+LK H +D + FK Sbjct: 501 ADAKQYGDERRTLIQQEK--RATF-EARVVDEPVTVVVSQKGWVRALKGHGLDAAGFTFK 557 Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606 GD L A T D ++ ++G+ Y++ L GRG G + LI+L ++ + Sbjct: 558 AGDGLYAAFQCRTPDTLIAWGSNGRVYSVAVAQLPGGRGDGVPVTSLIELESGSHLMHYY 617 Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD--HVAVV 664 + LL+ SS G FI + ++++ + GK+F+ + + + + D VA + Sbjct: 618 AASAEQALLLASSNGFGFIAKVGDMVSRVKAGKSFMTIDAGAAPLAPMPMLPDAEQVACL 677 Query: 665 GENRKLLIFSIDQIPEMS-RGKGVRLQSYKD 694 +LL+F +D++ +S G+GV L D Sbjct: 678 SSGGRLLVFGLDEMKTLSGGGRGVTLMGLDD 708 >gi|119897403|ref|YP_932616.1| DNA topoisomerase IV subunit A [Azoarcus sp. BH72] gi|119669816|emb|CAL93729.1| DNA topoisomerase IV subunit A [Azoarcus sp. BH72] Length = 801 Score = 497 bits (1280), Expect = e-138, Method: Compositional matrix adjust. Identities = 276/721 (38%), Positives = 416/721 (57%), Gaps = 32/721 (4%) Query: 19 AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78 A+ L E YLAYA+S +K RA+P + DG KPV RRI++AM+EM L+ A KSAR+ Sbjct: 53 ALPLDLYAERAYLAYAMSVVKSRALPQVEDGMKPVQRRILYAMNEMRLNATAKHVKSARV 112 Query: 79 VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138 VG+VIGK HPHGD SVYD++VR+AQ F RYPL+ GQGNFG+ DGDSAAA RYTE R+T Sbjct: 113 VGDVIGKYHPHGDSSVYDAMVRVAQDFSLRYPLVDGQGNFGSRDGDSAAAMRYTECRLTP 172 Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198 +AEL+L +D VDF Y+ EP + P++ P +L NG SGIAVGMAT IP HN++E Sbjct: 173 IAELLLSEIDRGTVDFVPNYDGAFEEPQLLPARLPFVLLNGASGIAVGMATEIPPHNLRE 232 Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258 + EA LI +PE ++ +L + GPDFP GG ++ S E+I ++Y GRG R+RARW + Sbjct: 233 VAEATCHLIRHPEAGLDDILPLLPGPDFPGGGQLISSPEAIRDAYAGGRGSLRMRARWRI 292 Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR------------------IPLLED 300 EE+ RG W ++V E+P+ V ++++ +I L + + +L+ Sbjct: 293 EELARGQWRVIVEELPHGVSAAQVLSEIETLTNPQPRAGKKEVSQEQKQLKQLVLGVLDT 352 Query: 301 IRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLD 358 +RDES++ VRIVL PK+ D M + + +ET +NM ++ PQ L Sbjct: 353 VRDESSDKAPVRIVLEPKSSRQSRDEFMAVLLAHTSLETSVSVNMTMIGRDGRPQQKNLV 412 Query: 359 GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV 418 IL+EW+ R + RR+ R+ +DRR+ IL+G +IA+L+I+++I +IR D+PKP ++ Sbjct: 413 QILREWIDFRYVTVERRTRHRLDEVDRRIHILEGRMIAFLHIEDVIRVIRESDEPKPALI 472 Query: 419 SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE 478 + F L++ Q + IL +RLR L +LE ++I+ EL+ L E+E + +L+ N+ A Sbjct: 473 AAFGLSDVQAEDILEIRLRQLARLEGFKIEKELNELKEEREGLQHVLD------NRSAMT 526 Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE--KEPITVVISNRGWIRSLKSH 536 +KEI + G R T E A + A I EP+TV++S GWIRS + H Sbjct: 527 RLILKEIGEDTKKYGDDRRTLIETV----APIASAEISVADEPVTVILSKNGWIRSRQGH 582 Query: 537 SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDL 596 +D +A+ +K GD L TT ++++ T G+AYT+ +L GRG G I L++ Sbjct: 583 GLDAAAISYKAGDFAFALLETRTTWPLIVIDTHGRAYTVKVSDLPGGRGDGVPIATLVEF 642 Query: 597 NHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV 656 D L +S G F+ ++ + R GK F+ + EK+ KV Sbjct: 643 QDGGKPAQVVSDDPATTWLFANSGGYGFLCSVADATSRQRAGKAFMALEKGEKVLAPAKV 702 Query: 657 TGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAG 716 G+ +A EN ++L+F ++ S G+GV + + +G + + + I+ AG Sbjct: 703 FGEWIAAGSENGRILVFPRAEMKTQSGGRGVIVMALDEGEALSAVAVPADDAVLTIEGAG 762 Query: 717 R 717 R Sbjct: 763 R 763 >gi|90020047|ref|YP_525874.1| DNA topoisomerase IV subunit A [Saccharophagus degradans 2-40] gi|89949647|gb|ABD79662.1| DNA topoisomerase IV subunit A [Saccharophagus degradans 2-40] Length = 748 Score = 497 bits (1280), Expect = e-138, Method: Compositional matrix adjust. Identities = 263/747 (35%), Positives = 442/747 (59%), Gaps = 23/747 (3%) Query: 10 NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69 +T+V + + + L+ E+ YL Y++ I +RA+P + DG KPV RRI++AMSE+GL Sbjct: 4 STVVYDAEEQIPLKQFSEKAYLDYSMYVILDRALPHVGDGLKPVQRRIVYAMSELGLKST 63 Query: 70 AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAA 128 A +KKSAR VG+VIGK HPHGD + Y+++V +AQPF RYPL+ GQGN+G+ D S AA Sbjct: 64 AKYKKSARTVGDVIGKFHPHGDSASYEAMVIMAQPFSFRYPLVDGQGNWGSQDDPKSFAA 123 Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188 RYTE+R+ ++++L + + VD++ ++ EP V P+K P +L NGT+GIAVGMA Sbjct: 124 MRYTESRLAAFSDVLLAELGQGTVDWQPNFDGTLDEPKVLPAKVPTVLLNGTTGIAVGMA 183 Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248 T IP HN++E+ A + L++NP ++ +L E+++GPD PT I+ RE I++ Y G+G Sbjct: 184 TDIPPHNLRELVNATIHLLENPNATVPELCEHLLGPDMPTEAEIISPREDIIKMYETGKG 243 Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308 ++RA W E G + V+T +P+QV ++++E+IA + AK++P++ D+RDES + Sbjct: 244 SLKMRAIWTKE--GNDA---VITALPHQVSGAKILEQIAAQMQAKKLPMVADLRDESDHE 298 Query: 309 --VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366 R+V+ P++ +D D +M +F +D+E + +N+N++ + P V LD IL +WL+ Sbjct: 299 NPTRLVIVPRSNRIDIDGVMNHLFATTDLERNYRVNLNMIGINGRPGVRSLDKILGDWLS 358 Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426 R + RR R+ ++RR+ +L LIA+LN+DE+I I+R EDKP+ V++ RF LTE Sbjct: 359 FRMVTVRRRLQHRLDWVNRRLHLLDAALIAFLNLDEVIEIVRTEDKPREVLMQRFDLTEE 418 Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486 Q + IL+ RLR L +LEE +I+ E D L E++ I+ L S + I ++ +V + Sbjct: 419 QANYILDTRLRQLARLEEMKIRGEQDELQKERDTIEKTLGSARMMKTLIKKDMLQVLK-- 476 Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546 + G R + +A + ++ EP+TVV+S +GWIRS K H +D ++L +K Sbjct: 477 ----EHGDERRSPIVTREESQAFSEDQLLTSEPVTVVLSEKGWIRSAKGHEMDPASLSYK 532 Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606 GD K A + ++L+ + G++Y L A L S RG GE + ++ I Sbjct: 533 AGDEFKFASRGKSNQSVILIDSTGRSYALAAHTLPSARGQGEPVTGRLNPPSGATIEGML 592 Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVAV 663 + ++L+ S G F+ + ++++ + GK L + ++ ++ + +A Sbjct: 593 MGSEDQRVLLASDAGYGFVGKLGDLVSKNKAGKAALTLPKGAEVLPPTVIEDLDNTWLAA 652 Query: 664 VGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISD----VICFKICEGLTWID--SAGR 717 +LL+F + ++PE++RGKG ++ + + + VI + + + S R Sbjct: 653 FSNEGRLLVFKVTELPELARGKGNKIINIPSARVQNREEFVIALAVVQASDTLKVVSGKR 712 Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGF 744 N DL ++G+RG G+ +P+GF Sbjct: 713 HLNLKFKDLEHYIGERGRRGNKLPRGF 739 >gi|209363674|ref|YP_001423529.2| DNA topoisomerase IV subunit A [Coxiella burnetii Dugway 5J108-111] gi|207081607|gb|ABS77839.2| topoisomerase IV subunit A [Coxiella burnetii Dugway 5J108-111] Length = 753 Score = 497 bits (1280), Expect = e-138, Method: Compositional matrix adjust. Identities = 271/752 (36%), Positives = 441/752 (58%), Gaps = 25/752 (3%) Query: 6 ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65 ++ S T +V+ L +E+ YL Y++S I +RA+P + DG KPV RRI++AMSE+G Sbjct: 3 MTKSTTPNALDVERQPLSEFVEKAYLDYSMSVILDRALPHIADGLKPVQRRIVYAMSELG 62 Query: 66 LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124 L A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF RYP + GQGN+G+ D Sbjct: 63 LKSTAKYKKSARTVGDVLGKFHPHGDTACYEAMVLMAQPFSFRYPFVDGQGNWGSADDPK 122 Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184 S AA RYTEAR++ A+L+L+ + E VD+ ++ EP + P++ PN+L NGTSGIA Sbjct: 123 SFAAMRYTEARLSAYAQLLLKELQEGTVDWIPNFDGTLKEPALLPARLPNVLLNGTSGIA 182 Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244 VGMAT IP HN+ E+ +A + L+++PE +++ ++++I GPD+PT I+ I YR Sbjct: 183 VGMATDIPPHNLTEVADACIHLLEHPEATLKDVMKFIQGPDYPTAAEIITPTAEIRTLYR 242 Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304 G+G R+RA + E + IV+T +P+QV +R++E+IA ++AK++P + DIRDE Sbjct: 243 TGQGSLRMRATYQKE-----NGEIVITALPHQVSGNRVMEQIAAQMVAKKLPAVSDIRDE 297 Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362 S + R+V+ P++ ++ LM +F+ +D+E + +N+N++ + P+V L +LK Sbjct: 298 SDHENPTRLVITPRSNRINIHELMAHLFVTTDLERSYRVNLNMIGIDGRPKVKDLISLLK 357 Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422 EWL R + + +R +R+Q + R+ +L+G +IAYLN+D IIAIIR EDKPKPV++ +F Sbjct: 358 EWLEFRMQTVRKRLQYRLQFVIERLHLLEGFIIAYLNLDAIIAIIRKEDKPKPVLMKKFK 417 Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482 L++ Q +AIL ++LR L KLEE +I+ E L E+++I+ L S + I E+ Sbjct: 418 LSDRQAEAILEIKLRQLAKLEEKKIRDEQAILTKERDEIEKTLASKTKLKKLIRGELAAD 477 Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542 KE + G +R + K ++ M+ EP+TVV+S +GWIR+ K H V+ Sbjct: 478 KEKY------GDKRCSPLMERPIAKMIREEEMVPSEPVTVVLSKKGWIRAAKGHEVEGET 531 Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602 L+++ GD + T + + L + GK+Y LPA L S RG G+ + + Sbjct: 532 LNYRSGDEFLMQAQGRTNELAVFLDSAGKSYALPAHTLPSARGLGDPLTSRLKPASGAHF 591 Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV---TGD 659 V + L+ S G F+ + R GK +K+ ++ L +V Sbjct: 592 VGVLMGADDDLFLLASDAGYGFLTSLVNLHVKNRSGKAVIKLPKGAQVMLPQRVHDKETQ 651 Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGIS--DVICFKIC-----EGLTWI 712 ++A + +LL+F I ++PE+ +GKG ++ ++ + C + LT + Sbjct: 652 YLAAITSEGRLLLFPIAELPELPKGKGNKIIQIAPARVANREEYCVALAVLHEKSSLT-L 710 Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGF 744 S R + +DL + G+RG G+ +P+GF Sbjct: 711 YSGKRRFTLKPDDLAQFQGERGRRGNKLPRGF 742 >gi|319761822|ref|YP_004125759.1| DNA topoisomerase iv, a subunit [Alicycliphilus denitrificans BC] gi|330826318|ref|YP_004389621.1| DNA topoisomerase IV subunit A [Alicycliphilus denitrificans K601] gi|317116383|gb|ADU98871.1| DNA topoisomerase IV, A subunit [Alicycliphilus denitrificans BC] gi|329311690|gb|AEB86105.1| DNA topoisomerase IV, A subunit [Alicycliphilus denitrificans K601] Length = 780 Score = 497 bits (1280), Expect = e-138, Method: Compositional matrix adjust. Identities = 276/762 (36%), Positives = 423/762 (55%), Gaps = 50/762 (6%) Query: 19 AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG----AAFKK 74 A+ L + YL YALS +K RA+PD+ DG KPV RRI++AM MGL + A K Sbjct: 17 ALGLGGYAQRAYLEYALSVVKGRALPDVCDGLKPVQRRILYAMDRMGLSYSGNAPAKPVK 76 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 SAR+VG+V+G+ HPHGDQS YD+LVRLAQ F QRYPLI GQGNFG+ DGD AAA RYTEA Sbjct: 77 SARVVGDVLGRFHPHGDQSAYDALVRLAQDFSQRYPLIDGQGNFGSRDGDGAAAMRYTEA 136 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 R+T++A L+L +D+ VDF Y+ EP P++ P L NG SGIAVG+AT IPSH Sbjct: 137 RLTKIAGLLLGEIDQGTVDFVPNYDGSTQEPRQLPARLPFALLNGASGIAVGLATEIPSH 196 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 N++E+ +A +AL+ NP +S E+L + GPD+P GG I+ S I ++YR GRG +VRA Sbjct: 197 NLREVADACVALVKNPRLSDEELFALVPGPDYPGGGQIISSVADIQDAYRGGRGSLKVRA 256 Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAEL------------------IIAKRIP 296 RW +E++ RG W +VVTE+P V +++E+I ++ + A + Sbjct: 257 RWKIEDLARGQWQMVVTELPPGVSAQKVLEEIEDITNPKVKAGKKALTQEQQQLKASMLA 316 Query: 297 LLEDIRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQV 354 +L+ +RDES++D VRIV PK + L+ ++ + +ET P+N+ ++ + P Sbjct: 317 VLDGVRDESSKDAPVRIVFEPKTGRVPQQELVTALLGHTSLETSAPINLTMVGLDGRPVQ 376 Query: 355 MPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK 414 L +L EW+ R++ + RRS R+ + R+ IL+G + LNIDE+IAIIR D PK Sbjct: 377 KSLRQMLAEWVEFRQQTITRRSQHRLAKVLDRIHILEGRQLVLLNIDEVIAIIRAADDPK 436 Query: 415 PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQ 474 +++RFSL+E Q + IL +RLR L +LE +I+ EL L E+ +++ +L N Sbjct: 437 AALMARFSLSERQAEDILEIRLRQLARLEAIKIEQELSELRKEQGQLEDILA------NP 490 Query: 475 IACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK 534 + V+EI + + R T + K + + + EP TVV+S +GW+R+ + Sbjct: 491 ASLRRLMVREIEADAKQFADARRTLIQEE---KKVVAEVKVVDEPTTVVVSQKGWVRTRQ 547 Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLI 594 H + FK GD L T D++++ ++G+ Y++P L GRG G+ + LI Sbjct: 548 GHGHAADSFAFKAGDGLYGTFECRTVDQLIVFGSNGRLYSVPVAQLPGGRGDGQPVTTLI 607 Query: 595 DLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654 +L I F +LL+ S G F+ + +++ + GK F+ + E + Sbjct: 608 ELEPGTQIAHYFAGPVQAQLLLAGSGGYGFVAQVEHMVSRNKGGKAFVALGEGETLCAPS 667 Query: 655 KVTG----------DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKD-GGISDVIC 702 V G HV ++L F I ++ +M + G+G+ L + +D ++ Sbjct: 668 HVAGTSASQPLAAATHVCCASAGGRILTFDIGELKQMDKGGRGLMLIALEDKDSLAGAAA 727 Query: 703 FKICEGLTWIDSAGRSYN-----RSENDLLGWLGKRGGVGSL 739 + + + GR RS N+ G G++G L Sbjct: 728 YTRSVRIAGVGRGGRQREEQLEIRSLNNARGTRGRKGKAADL 769 >gi|213967906|ref|ZP_03396052.1| DNA topoisomerase IV, A subunit [Pseudomonas syringae pv. tomato T1] gi|301384425|ref|ZP_07232843.1| DNA topoisomerase IV subunit A [Pseudomonas syringae pv. tomato Max13] gi|302062283|ref|ZP_07253824.1| DNA topoisomerase IV subunit A [Pseudomonas syringae pv. tomato K40] gi|302132287|ref|ZP_07258277.1| DNA topoisomerase IV subunit A [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213927249|gb|EEB60798.1| DNA topoisomerase IV, A subunit [Pseudomonas syringae pv. tomato T1] Length = 751 Score = 497 bits (1280), Expect = e-138, Method: Compositional matrix adjust. Identities = 272/761 (35%), Positives = 447/761 (58%), Gaps = 29/761 (3%) Query: 6 ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65 +S+S L + V+ SL E+ YL Y++ I +RA+P + DG KPV RRII+AMSE+G Sbjct: 1 MSDSLDLSLDGVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELG 60 Query: 66 LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124 L A KKSAR VG+V+GK HPHGD + Y+++V +AQPF RY L+ GQGN+G D Sbjct: 61 LGADAKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPDDPK 120 Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184 S AA RYTEAR+++ +E++L + + D+ ++ EP V P++ PN+L NGT+GIA Sbjct: 121 SFAAMRYTEARLSRYSEVLLSELGQGTADWVPNFDGTLDEPAVLPARLPNILLNGTTGIA 180 Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244 VGMAT +P HN++E+ A + L+D P+ +I +L E+I+GPD+PT I+ R +++ Y Sbjct: 181 VGMATDVPPHNLREVASACVHLLDEPKATIPELCEHILGPDYPTEAEIITPRADLLKIYE 240 Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304 GRG R+RA + +E+ I+VT +P+QV ++++E+IA + AK++P++ D+RDE Sbjct: 241 TGRGSVRMRAVYRIED-----GDIIVTSLPHQVSGAKVLEQIAAQMQAKKLPMVADLRDE 295 Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362 S D RIV+ P++ ++ D LM+ +F +++E+ + +N+N++ + PQ+ L +L Sbjct: 296 SDHDNPCRIVIIPRSNRVELDELMQHLFATTELESSYRVNINIIGLDGKPQLKNLKTLLS 355 Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422 EWL R + RR FR+ ++ R+ +L GLL AYLN+DE+I IIR + PK +++RF Sbjct: 356 EWLTFRIGTVRRRLQFRLDKVEHRLHLLDGLLTAYLNLDEVIHIIRTAEHPKAELIARFG 415 Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482 L+E Q D IL+ RLR L +LEE +++SE D L E+ K+ +LL S + + E+ Sbjct: 416 LSEIQADYILDTRLRQLARLEEMKLRSEQDALRKEQAKLQALLGSESKLRKLVRAELIAD 475 Query: 483 KEIFSKSTDLGRRRTTFCEVSRAD-KATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS 541 E + RR+ V+RA+ KA + ++ EP+TVV+S +GW+R K H +D + Sbjct: 476 AETYGDD-----RRSPI--VARAEAKALSENELMPTEPVTVVLSEKGWVRCAKGHDIDAT 528 Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD 601 L +K GD K + + + + + G++Y++ A L S RG GE + + Sbjct: 529 GLSYKAGDGFKTSAIGRSNQFAVFIDSTGRSYSVAAHTLPSARGQGEPLTGKLQPPPGAT 588 Query: 602 IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--- 658 + + ++ S G F+V+ ++ A + GK L + K+ L V Sbjct: 589 FECVLLPEDDALYVIASDAGYGFVVKGEDLQAKNKAGKALLSLPGGAKVILPRPVADREL 648 Query: 659 DHVAVVGENRKLLIFSIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTW 711 + +A V +LL+F + +P++ +GKG ++ + ++ ++D+ I +G T Sbjct: 649 NWLAAVTTEGRLLVFKVSDLPQLGKGKGNKIIGIPGERVASREEYVTDLAV--IAQGATL 706 Query: 712 IDSAG-RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751 + AG R+ + DL + G+RG G+ +P+GF R L Sbjct: 707 VLQAGKRTLSLKPEDLEHYKGERGRRGNKLPRGFQRVDALL 747 >gi|194290251|ref|YP_002006158.1| DNA topoisomerase iv subunit a [Cupriavidus taiwanensis LMG 19424] gi|193224086|emb|CAQ70095.1| DNA topoisomerase IV, subunit A [Cupriavidus taiwanensis LMG 19424] Length = 780 Score = 497 bits (1280), Expect = e-138, Method: Compositional matrix adjust. Identities = 283/751 (37%), Positives = 428/751 (56%), Gaps = 40/751 (5%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 EE +++L E YL YA+S +K RA+P++ DG KPV RRI+ AM EMGL A Sbjct: 11 EEPADSLTLARYAERAYLDYAVSVVKGRALPEVADGQKPVQRRILFAMHEMGLRADAKPV 70 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSAR+VG+V+GK HPHGDQS YD+LVRLAQ F RYPLI GQGNFG+ DGD AAA RYTE Sbjct: 71 KSARVVGDVLGKFHPHGDQSAYDALVRLAQDFSLRYPLIDGQGNFGSRDGDGAAAMRYTE 130 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 AR+T ++ L+L +DE VDF Y+ EP + P++ P +L NG SGIAVGMAT IP Sbjct: 131 ARLTPISRLLLDEIDEGTVDFIPNYDGSMQEPKLLPARLPFVLLNGASGIAVGMATEIPP 190 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN++E+ A +A+I NP I++ +LL + GPD+P GG I+ I + Y GRG +VR Sbjct: 191 HNLREVAAATVAMIRNPNIALAELLALMPGPDYPGGGQIISPAADIAQIYENGRGSLKVR 250 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAEL------------------IIAKRI 295 ARW +EE+ RG W +VVTE+P +++E+I E+ + A + Sbjct: 251 ARWTIEEMARGQWQLVVTELPPNTSAQKVLEEIEEITNPKIKTGKKALTPDQQQLKATVL 310 Query: 296 PLLEDIRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQ 353 +L+ +RDES +D VR+V PK++++D ++++ + +E+ P+N+ ++ P+ Sbjct: 311 AVLDAVRDESGKDAPVRLVFEPKSKNIDQQEFIQTLLAHTSLESGAPINLVMIGTDGRPR 370 Query: 354 VMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP 413 L IL EW+A R + + RR+ R+ ++ R+ IL+G ++ LNIDE+I IIR D+P Sbjct: 371 QKGLREILGEWIAFRFDTVTRRTRHRLGKVEDRIHILEGRMLVLLNIDEVIRIIRESDEP 430 Query: 414 KPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWN 473 KP +V F L++ Q + IL +RLR L +LE +I+ EL L E+ +D LL S Sbjct: 431 KPALVEAFGLSDRQAEDILEIRLRQLARLEAIRIEKELKELREEQADLDVLLKSETMMRR 490 Query: 474 QIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL 533 +I EI + +S D RRT E RA + + EP+TVV+S +GW+R+ Sbjct: 491 RIIKEIETDAKQYSPE-DKDPRRTLIQEERRA----AAEVRVIDEPVTVVMSQKGWVRTR 545 Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593 + H D FK GD+L T D +L+ T+G+ Y++P +L GRG G I L Sbjct: 546 QGHGHDPQQFTFKAGDALYNTFDCRTVDVLLVFGTNGRVYSVPVSSLPGGRGDGVPITTL 605 Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653 I+L + F +++ ++L+ ++ GN F ++ + GK+FL + + L Sbjct: 606 IELQSGSQVAHTFAGNASQRVLIATANGNGFQTTVGDMTGRQKGGKSFLTLDDGD-APLA 664 Query: 654 VKVTGD---HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGL 709 G+ H A + N +LL+ +++++ +S G+GV L + + + + G Sbjct: 665 PAPIGEEATHAACLSGNGRLLLVALEEVKVLSAGGRGVILMELEP---KEKLLQAVAVGA 721 Query: 710 TW--IDSAGRSYNRSENDLLG-----WLGKR 733 + AGR S L G ++GKR Sbjct: 722 PGLVLSGAGRGGKPSSQKLAGQSLLPYVGKR 752 >gi|212633645|ref|YP_002310170.1| DNA topoisomerase IV subunit A [Shewanella piezotolerans WP3] gi|212555129|gb|ACJ27583.1| DNA gyrase, subunit A [Shewanella piezotolerans WP3] Length = 755 Score = 497 bits (1280), Expect = e-138, Method: Compositional matrix adjust. Identities = 275/754 (36%), Positives = 438/754 (58%), Gaps = 25/754 (3%) Query: 6 ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65 +S++ L + V+ + +R EE YL Y++ I +RA+P + DG KPV RRII+AMSE+G Sbjct: 1 MSDAIDLSLDGVEQMPMRRFTEEAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELG 60 Query: 66 LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124 L + KKSAR VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D Sbjct: 61 LSAQSKHKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPK 120 Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184 S AA RYTEAR+++ +E++L + + VD+ ++ EP+V P++ P++L NG +GIA Sbjct: 121 SFAAMRYTEARLSKFSEVLLSELGQGTVDWGVNFDGTMKEPLVLPARLPHILLNGITGIA 180 Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244 VGMAT +P HN +E+ A + L+DNP+ + +L+E++ GPD+PT I+ I + Y+ Sbjct: 181 VGMATDVPPHNAKELVGACVELLDNPKADLPRLMEFVPGPDYPTEAEIITPSADIAKIYQ 240 Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304 GRG + RA + +E + +V++ +P+Q +++E+IA + AK++P++ D+RDE Sbjct: 241 TGRGSIKARAVYTIE-----NGEVVISALPHQASSGKILEQIAAQMQAKKLPMVTDLRDE 295 Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362 S + VR+V+ P++ +D D +M +F +D+E + +N+NVL + PQV L +L Sbjct: 296 SDHESPVRMVIVPRSNRVDCDQMMAHLFATTDLEKSYRVNLNVLGLNGRPQVKGLRELLT 355 Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422 EWL R + RR FR+ I R+ IL L+IA+LNIDE+I IIR D PK +++RF Sbjct: 356 EWLVFRMTTVKRRLEFRLDKILARLHILDALMIAFLNIDEVIEIIRFHDDPKAELMTRFE 415 Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482 L++ Q DAIL+L+LR L KLEE++IKSE L AE++K+ LL+S ++ I Sbjct: 416 LSDKQADAILDLKLRHLAKLEEFKIKSEQSELEAERDKLQLLLSSERRMKTLIK------ 469 Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542 KE+ D G R + V KA +Q ++ E +TVV+S +GW+R K H VD + Sbjct: 470 KELIKDGEDYGDDRRSPLVVRGESKALTEQELVPAESVTVVLSEKGWVRCAKGHEVDGKS 529 Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602 L +K GD + + + + T G+A+ L S R GE I +L + Sbjct: 530 LSYKAGDEFLCSAPGRSNQPSVFIDTSGRAFATETHTLPSARSQGEPITTRFNLAPGATM 589 Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-- 660 + D + ++ S G FI ++I+ + GK L + + K+ L KV Sbjct: 590 EHVLLADESQCYILASDAGYGFIAANKDMISRNKAGKALLSLPANAKVLLPQKVDKSKAQ 649 Query: 661 --VAVVGENRKLLIFSIDQIPEMSRGKGVRL-----QSYKDGGISDVICFKICEGLTWID 713 +A+ E R +L+FS+D +P++++GKG ++ + K+ + I E + Sbjct: 650 SILAITNEGR-MLLFSLDALPQLTKGKGNKIIGIPTERAKNREELLIHLNVIPEDMPVTL 708 Query: 714 SAG-RSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746 AG R +DL + G+RG G+ +P+G R Sbjct: 709 WAGKRKLTLKPSDLEHYRGERGRRGAKLPRGLQR 742 >gi|165919299|ref|ZP_02219385.1| DNA topoisomerase IV, A subunit [Coxiella burnetii RSA 334] gi|165917022|gb|EDR35626.1| DNA topoisomerase IV, A subunit [Coxiella burnetii RSA 334] Length = 751 Score = 497 bits (1280), Expect = e-138, Method: Compositional matrix adjust. Identities = 271/752 (36%), Positives = 441/752 (58%), Gaps = 25/752 (3%) Query: 6 ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65 ++ S T +V+ L +E+ YL Y++S I +RA+P + DG KPV RRI++AMSE+G Sbjct: 1 MTKSTTPNALDVERQPLSEFVEKAYLDYSMSVILDRALPHIADGLKPVQRRIVYAMSELG 60 Query: 66 LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124 L A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF RYP + GQGN+G+ D Sbjct: 61 LKSTAKYKKSARTVGDVLGKFHPHGDTACYEAMVLMAQPFSFRYPFVDGQGNWGSADDPK 120 Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184 S AA RYTEAR++ A+L+L+ + E VD+ ++ EP + P++ PN+L NGTSGIA Sbjct: 121 SFAAMRYTEARLSAYAQLLLKELQEGTVDWIPNFDGTLKEPALLPARLPNVLLNGTSGIA 180 Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244 VGMAT IP HN+ E+ +A + L+++PE +++ ++++I GPD+PT I+ I YR Sbjct: 181 VGMATDIPPHNLTEVADACIHLLEHPEATLKDVMKFIQGPDYPTAAEIIAPTAEIRTLYR 240 Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304 G+G R+RA + E + IV+T +P+QV +R++E+IA ++AK++P + DIRDE Sbjct: 241 TGQGSLRMRATYQKE-----NGEIVITALPHQVSGNRVMEQIAAQMVAKKLPAVSDIRDE 295 Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362 S + R+V+ P++ ++ LM +F+ +D+E + +N+N++ + P+V L +LK Sbjct: 296 SDHENPTRLVITPRSNRINIHELMAHLFVTTDLERSYRVNLNMIGIDGRPKVKDLISLLK 355 Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422 EWL R + + +R +R+Q + R+ +L+G +IAYLN+D IIAIIR EDKPKPV++ +F Sbjct: 356 EWLEFRMQTVRKRLQYRLQFVIERLHLLEGFIIAYLNLDAIIAIIRKEDKPKPVLMKKFK 415 Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482 L++ Q +AIL ++LR L KLEE +I+ E L E+++I+ L S + I E+ Sbjct: 416 LSDRQAEAILEIKLRQLAKLEEKKIRDEQAILTKERDEIEKTLASKTKLKKLIRGELAAD 475 Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542 KE + G +R + K ++ M+ EP+TVV+S +GWIR+ K H V+ Sbjct: 476 KEKY------GDKRCSPLMERPIAKMIREEEMVPSEPVTVVLSKKGWIRAAKGHEVEGET 529 Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602 L+++ GD + T + + L + GK+Y LPA L S RG G+ + + Sbjct: 530 LNYRSGDEFLMQAQGRTNELAVFLDSAGKSYALPAHTLPSARGLGDPLTSRLKPASGAHF 589 Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV---TGD 659 V + L+ S G F+ + R GK +K+ ++ L +V Sbjct: 590 VGVLMGADDDLFLLASDAGYGFLTSLVNLHVKNRSGKAVIKLPKGAQVMLPQRVHDKETQ 649 Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGIS--DVICFKIC-----EGLTWI 712 ++A + +LL+F I ++PE+ +GKG ++ ++ + C + LT + Sbjct: 650 YLAAITSEGRLLLFPIAELPELPKGKGNKIIQIAPARVANREEYCVALAVLHEKSSLT-L 708 Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGF 744 S R + +DL + G+RG G+ +P+GF Sbjct: 709 YSGKRRFTLKPDDLAQFQGERGRRGNKLPRGF 740 >gi|187923203|ref|YP_001894845.1| DNA topoisomerase IV subunit A [Burkholderia phytofirmans PsJN] gi|187714397|gb|ACD15621.1| DNA topoisomerase IV, A subunit [Burkholderia phytofirmans PsJN] Length = 774 Score = 497 bits (1279), Expect = e-138, Method: Compositional matrix adjust. Identities = 273/693 (39%), Positives = 416/693 (60%), Gaps = 36/693 (5%) Query: 27 EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86 E YL YA+S +K RA+PD+ DG KPV RRI+ AM++MGL A KSAR+VG+V+GK Sbjct: 28 ERAYLDYAVSVVKGRALPDVCDGQKPVQRRILFAMNDMGLSDNAKPVKSARVVGDVLGKY 87 Query: 87 HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQG 146 HPHGDQS YD+LVRLAQ F RYPLI GQGNFG+ DGD AAA RYTEAR+T +A+L+L Sbjct: 88 HPHGDQSAYDALVRLAQDFSMRYPLIDGQGNFGSRDGDGAAAMRYTEARLTPIAKLLLDE 147 Query: 147 VDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALAL 206 +++ VDF Y+ EP + P++ P +L NG SGIAVG+AT IPSHN++E+ A +A+ Sbjct: 148 INQGTVDFMPNYDGSSEEPRLLPARLPFVLLNGASGIAVGLATEIPSHNLREVAAATVAM 207 Query: 207 IDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSW 266 I NP+I +L+++I GPDFP G I+ S I +Y GRG +VRARW +EE+ RG W Sbjct: 208 IRNPKIEHAELMQHIAGPDFPGGAQIISSDAEISAAYESGRGSLKVRARWKIEELARGQW 267 Query: 267 CIVVTEIPYQVQKSRLIEKIAE-----LIIAKR-------------IPLLEDIRDESAED 308 +V+TE+P +++E+I E + + K+ + LL+ +RDES D Sbjct: 268 QLVITELPPNTAAQKVLEEIEEQTNPKIKLGKKALTPEQLQTKQTMLALLDAVRDESGRD 327 Query: 309 --VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366 VR+V PK+ +D + ++ + +E+ LNM ++ P+ L IL EW+A Sbjct: 328 APVRLVFEPKSSRIDQTDFVNTLLAYTSLESNASLNMVMVGGDGRPRQKGLSEILHEWIA 387 Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426 R + RR+ R+ +D R+ IL+G +I +LNIDE+I IIR D+PK +++ F L++ Sbjct: 388 FRFATVTRRTRHRLSKVDDRIHILEGRMIVFLNIDEVIRIIRESDEPKVALMAAFGLSDR 447 Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486 Q + IL +RLR L +LE+ +I+ EL L EK K++ LL S + A + +KEI Sbjct: 448 QAEDILEIRLRQLARLEKIKIEKELAELRDEKAKLEELLGS------ESAMKRLLIKEIE 501 Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546 + G R T + + +AT +A + EP+TVV+S +GW+R+LK H +D++ FK Sbjct: 502 GDAKQYGDERRTLIQQEK--RATF-EARVVDEPVTVVVSQKGWVRALKGHGLDVAGFTFK 558 Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606 GD L A T D ++ ++G+ Y++ L GRG G + LI+L ++ + Sbjct: 559 AGDGLYAAFQCRTPDTLVAWGSNGRVYSVAVAMLPGGRGDGVPVTSLIELESGSHLLHYY 618 Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE----EKMKLVVKVTGDHVA 662 + LL+ SS G F+ + ++++ + GK+F+ + + + M ++ T H+A Sbjct: 619 AASAEQALLLASSNGFGFVAKVGDMVSRVKAGKSFMTIDAGAAPLKPMPMLPDAT--HIA 676 Query: 663 VVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKD 694 + +LL+F ID++ +S G+GV L + D Sbjct: 677 CLSSGGRLLVFGIDEMKTLSGGGRGVTLMALDD 709 >gi|149191297|ref|ZP_01869552.1| DNA topoisomerase IV subunit A [Vibrio shilonii AK1] gi|148834895|gb|EDL51877.1| DNA topoisomerase IV subunit A [Vibrio shilonii AK1] Length = 758 Score = 497 bits (1279), Expect = e-138, Method: Compositional matrix adjust. Identities = 283/750 (37%), Positives = 455/750 (60%), Gaps = 23/750 (3%) Query: 9 SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68 S + + V+ + LR E+ YL Y++ I +RA+P + DG KPV RRII+AMSE+GL Sbjct: 2 STEMSFDGVEQLPLRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61 Query: 69 GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAA 127 A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S A Sbjct: 62 AAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFA 121 Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187 A RYTEA++++ AE++L + + V+++ ++ EP + P++ P++L NG +GIAVGM Sbjct: 122 AMRYTEAKLSKFAEVLLGEIGQGTVEWQPNFDGTMKEPKILPARLPHILLNGITGIAVGM 181 Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247 AT IP HNV+EI +A + LIDNP+ + ++++++ GPD+PT I+ + + YR GR Sbjct: 182 ATDIPPHNVREIADATIHLIDNPKADLPQVMDFVKGPDYPTEAEIISPSADLEKIYRTGR 241 Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307 G ++RA W E GS IV+T +P+QV ++L+E+IA + AK++P+++D+RDES Sbjct: 242 GSVKMRAVWHKE----GS-DIVITALPHQVSGAKLLEQIANQMRAKKLPMVDDLRDESDH 296 Query: 308 D--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365 + RIV+ P++ +D D LM +F +D+E F +N+N++ + PQV L IL EW+ Sbjct: 297 ENPTRIVVVPRSNRIDCDQLMNHLFASTDLEKNFRVNLNMIGLDNRPQVKGLVQILSEWI 356 Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425 RRE + +R +R+ I R+ IL+GLL+AYLN+DE+I IIR ED+PK V++ RF +T+ Sbjct: 357 QFRRETVRKRLQYRLDKILARLHILEGLLVAYLNLDEVIEIIRTEDEPKAVLMERFGITD 416 Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485 Q DAIL+ +LR L KLEE +I+ E + L E+EK++ LL S ++ + EI+ E Sbjct: 417 IQADAILDTKLRHLAKLEEMKIRGEQEELEKEREKLEKLLGSERRMNTLLKKEIQADAEK 476 Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545 + RR+ E + A KA ++ ++ EPITVV+S +GWIR K H VD S+L++ Sbjct: 477 YGDD-----RRSPIVERAEA-KAMTERDLVPSEPITVVLSEKGWIRHAKGHDVDASSLNY 530 Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605 K GD + + + L +DG++Y+L + +L S R GE I +++N +I Sbjct: 531 KAGDKYLASARGKSNQPAVFLGSDGRSYSLESHSLPSARSQGEPITGRLNINAGTNIRQV 590 Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVA 662 + + + LV S G F+ + S++++ R GK + + ++ ++ + D + Sbjct: 591 VMGEESQLWLVGSDAGYGFVCKGSDLLSKNRSGKALVTLPQGAEVITPSMIGDLESDEIL 650 Query: 663 VVGENRKLLIFSIDQIPEMSRGKG---VRLQSYKDGGISDVIC--FKICEGLTWIDSAG- 716 + ++L+F I +P++ +GKG + + S K + + + +G T AG Sbjct: 651 AITNQGRMLLFPIKDLPQLGKGKGNKIINIPSAKAKAREEFVSHLMALPQGATITLYAGK 710 Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746 R DL + G+RG G L+P+G R Sbjct: 711 RKLGLKPADLENFRGERGRRGGLLPRGLQR 740 >gi|119944625|ref|YP_942305.1| DNA topoisomerase IV subunit A [Psychromonas ingrahamii 37] gi|119863229|gb|ABM02706.1| DNA topoisomerase IV subunit A [Psychromonas ingrahamii 37] Length = 759 Score = 497 bits (1279), Expect = e-138, Method: Compositional matrix adjust. Identities = 284/758 (37%), Positives = 440/758 (58%), Gaps = 25/758 (3%) Query: 6 ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65 +SN L E V+ + L EE YL YA+ I +RA+P + DG KPV RRII+AMSE+G Sbjct: 1 MSNLLDLSLEGVEKLPLTKFTEEAYLNYAMYVIMDRALPHISDGLKPVQRRIIYAMSELG 60 Query: 66 LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124 L + KKSAR VG+V+GK HPHGD + Y+++V +AQPF RYPLI GQGN+G D Sbjct: 61 LSALSKHKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLIDGQGNWGAPDDPK 120 Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184 S AA RYTE+R++ +EL+L V D++ ++ EPV+ P++ P++L NG SGIA Sbjct: 121 SFAAMRYTESRLSAFSELLLSEVALGTTDWKPNFDGTMKEPVLLPARLPHILLNGISGIA 180 Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244 VGMAT IP HNV+E+ A LID+P+ ++ L+ ++ GPD+PT I+ I + Y Sbjct: 181 VGMATDIPPHNVREVAAACCHLIDHPKANLIDLMAFVQGPDYPTEAEIITPNSDIKKIYE 240 Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304 GRG F+ RA + VE + IV+T +P++V +++++IA+ + K++P++ D+RDE Sbjct: 241 TGRGSFKSRAVYTVE-----NGEIVITALPHRVSGGKILKEIAKQMQDKKLPMIADLRDE 295 Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362 S + R+V+ P++ +D + LM +F +D+E +N+N+L + + PQV L IL Sbjct: 296 SDHENPTRLVIIPRSNRIDIEGLMHHLFASTDLEVNHKVNLNMLGLDQRPQVKGLVTILN 355 Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422 EWL +R + + RR FR+ I R+ IL+GLL AYLNIDE+I IIR D K ++SRF Sbjct: 356 EWLVYRMKTVRRRLQFRLDKILARLHILEGLLAAYLNIDEVIEIIRTCDDAKAELMSRFE 415 Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482 L+ Q AIL ++LR L KLEE QI++E+D L E+ K++ LL+S +++ N + Sbjct: 416 LSAIQAHAILEIKLRQLAKLEEIQIRAEMDTLTDEQTKLERLLSS-ERRLNTLV-----K 469 Query: 483 KEIFSKSTDLG-RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS 541 KEI + + G RR+ E A KA ++ ++ E +TVV+S +GW+RS K VD Sbjct: 470 KEIQADALKYGDDRRSPLIERIEA-KALTEKELMPSETVTVVLSTQGWVRSAKGLDVDAQ 528 Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD 601 AL++K GD + + + G+AY+L +L S R GE + + N N Sbjct: 529 ALNYKSGDEFLTKAQGRSNQSCIFIDASGRAYSLDVHSLPSARSQGEPLTGRFNQNENVP 588 Query: 602 IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--- 658 V A + D + L+ S G FI + S+I + + GKT + ++ ++ K+T Sbjct: 589 FVCALIGDDDDRYLISSDHGYGFIAKFSDINSRNKNGKTLINLTPNAQLMPPKKMTAADD 648 Query: 659 DHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISD----VICFKICEGLTWI-- 712 D + +LL+F ++ +P +S+GKG R+ + + V +I + + Sbjct: 649 DWCLTISNEGRLLLFPVNSLPSLSKGKGNRMLNIISAKATKREEFVTMLEIIPQASSVTL 708 Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750 + R +DL+ + G+RG GS +P+G R K Sbjct: 709 HAGKRKLTLKPSDLVHYQGERGRRGSKLPRGLQRVDKI 746 >gi|319779377|ref|YP_004130290.1| Topoisomerase IV subunit A [Taylorella equigenitalis MCE9] gi|317109401|gb|ADU92147.1| Topoisomerase IV subunit A [Taylorella equigenitalis MCE9] Length = 768 Score = 497 bits (1279), Expect = e-138, Method: Compositional matrix adjust. Identities = 266/691 (38%), Positives = 410/691 (59%), Gaps = 35/691 (5%) Query: 18 KAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSAR 77 ++V L + YL YA S +K RA+PD+ DG KPV RRI++AM MGL G KSAR Sbjct: 16 ESVDLGTYASKAYLDYAFSVVKGRALPDVGDGQKPVQRRILYAMDRMGLRAGVKPVKSAR 75 Query: 78 IVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMT 137 +VG+V+GK HPHGDQ+ YD++VR+AQ F RYPLI GQGNFG+ DGD AAA RYTEAR++ Sbjct: 76 VVGDVLGKYHPHGDQAAYDAMVRMAQDFSLRYPLIDGQGNFGSRDGDGAAAMRYTEARLS 135 Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197 +AEL+L + E V+F Y+ ++ EP + P++ P LL NG SGIAVGMAT IPSHN+ Sbjct: 136 PIAELLLDELGEKTVEFIPNYDGQELEPAMLPARLPFLLLNGASGIAVGMATEIPSHNLG 195 Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257 E+ A +A+I NP IS ++L + + GPD+ +G I+ E + + Y G+G +VRARW Sbjct: 196 EVANACIAIIKNPNISSDELFDILPGPDYHSGAQIISQPEVLKQIYETGKGTVKVRARWE 255 Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP------------------LLE 299 EE+ RG W +VVTE+P +++E+I EL K P LL+ Sbjct: 256 FEELARGQWQMVVTELPPNTSCQKVLEEIEELTNPKVKPGKKSLNSEQQNTKSMMLGLLD 315 Query: 300 DIRDESA--EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPL 357 +RDES + VR+V PK +D + + ++ + ME +N+ + + P+ L Sbjct: 316 AVRDESGREDSVRLVFEPKTSRIDREEFVNALLTHTSMEGNSSINLVCIGIDGKPRQRNL 375 Query: 358 DGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM 417 IL EW+ R E + R+ +R++ + R+ +L+G I LN+DE+I+ IRN D+PKP + Sbjct: 376 KEILIEWVQFRTETVLSRTKYRLERVLDRIHVLEGREIVLLNVDEVISTIRNSDEPKPAL 435 Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477 + +F+L++ Q + IL ++LR L KLE +I+ EL++ E++K+++LLNS QI Sbjct: 436 IEKFNLSDRQAEDILEMKLRQLAKLEGIKIQQELEDKRLEQKKLENLLNSNSSLKKQI-- 493 Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHS 537 +KEI S + R T + A+KATL+ +++ EP+TV+IS++GW+R+ + H Sbjct: 494 ----IKEIESDAKKYADARRTL--IKHAEKATLEVKVVD-EPVTVIISDKGWVRARQGHG 546 Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLN 597 V+ SAL+FK GDSL T D ++ + ++G+ YT+P +L S RG G+ +IDL Sbjct: 547 VEESALNFKSGDSLYGTFEVRTVDNLIGIGSNGRVYTVPVSSLPSARGDGQPYSAMIDLE 606 Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV---- 653 I L++ G F+ ++++ + GK+F +S EE L+ Sbjct: 607 SKTQISHYVCAKEDSVWLLMQDNGLGFVTTFKDMVSRIKAGKSF--ISMEEGANLLRPIP 664 Query: 654 VKVTGDHVAVVGENRKLLIFSIDQIPEMSRG 684 V + ++ ++ +N + LI I I ++ G Sbjct: 665 VGSSARYIGMLSKNDRFLIVPIQDIKHLNSG 695 >gi|33602203|ref|NP_889763.1| DNA topoisomerase IV subunit A [Bordetella bronchiseptica RB50] gi|33576641|emb|CAE33719.1| topoisomerase IV subunit A [Bordetella bronchiseptica RB50] Length = 771 Score = 497 bits (1279), Expect = e-138, Method: Compositional matrix adjust. Identities = 272/745 (36%), Positives = 426/745 (57%), Gaps = 41/745 (5%) Query: 18 KAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSAR 77 +A++L E+ YL YA+S ++ RA+PD+ DG KPV RRI++AM MGL GA KSAR Sbjct: 19 EAITLGRYAEQAYLDYAVSVVRGRALPDVGDGQKPVQRRILYAMQAMGLAAGAKPVKSAR 78 Query: 78 IVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMT 137 +VG+V+GK HPHGDQ+ YD++VR+AQ F RYPLI G GNFG+ DGD+AAA RYTEAR+T Sbjct: 79 VVGDVLGKYHPHGDQAAYDAMVRMAQDFSLRYPLIDGHGNFGSRDGDNAAAMRYTEARLT 138 Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197 ++L+L ++E VDF Y+ EP + P++ P +L NG SGIAVGMAT IPSHN++ Sbjct: 139 PFSKLLLDELEEGTVDFVPNYDGSQQEPAMLPARLPVMLLNGASGIAVGMATEIPSHNLR 198 Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257 E+ +A +ALI NP++ E+LL + GPDF GG I+ I + Y GRG + RARW Sbjct: 199 EVAQACVALIRNPKLPQEELLALVPGPDFAGGGQIITPAADIAQIYATGRGSLKARARWQ 258 Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAK------------------RIPLLE 299 EE+ RG W +VVTE+P +++E+I E+ K + LL+ Sbjct: 259 FEEMARGQWQLVVTELPPGTSGQKVLEEIEEITNPKVRAGKKSLSAEQQQAKAVMLSLLD 318 Query: 300 DIRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPL 357 +RDES +D VR+V PK +D D + ++ + ME+ P+N+ + P+ L Sbjct: 319 AVRDESGKDAAVRLVFEPKTSRVDRDEFVNTLLAQTSMESNVPVNVVCIGTDGRPRQKSL 378 Query: 358 DGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM 417 +L+EW+A R + + RR+ R+ + R+ +L+G ++ YLN+DE+I IR ++P+ + Sbjct: 379 RDVLEEWVAFRTDTVVRRTRHRLDKVLDRIHVLEGRMVVYLNVDEVIQTIREAEEPRAAL 438 Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477 ++RF LTE Q + IL +RLR L +LE +I+ EL E+ ++ LL+ N + Sbjct: 439 MARFGLTERQAEDILEMRLRQLARLEGIKIEQELAGKREEQLRLQDLLD------NPGSL 492 Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHS 537 + +KEI + G R T E A++A L+ +++ EP+TV++S +GW+R+ + H Sbjct: 493 KRLLIKEIEGDAKQYGDDRRTLIET--AERAVLETKVVD-EPVTVIVSQKGWLRARQGHG 549 Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLN 597 D FK+GD L A TTD ++ + +G+ Y++ L S RG G+ + +IDL Sbjct: 550 HDAGQFSFKQGDDLYGAFECRTTDTLIAVGDNGRVYSVAVSGLPSARGDGQPVTTMIDLE 609 Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV-SSEEKMKLVVKV 656 IV + L+ + +G F S++ + R GK F+ + +E ++ V Sbjct: 610 AGTRIVHTIAAAPGSRWLLATRRGFGFAARLSDMSSRQRAGKQFITLEQGDELLRPVPLF 669 Query: 657 TG-DHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDS 714 G +A++ K L+F +D++ +S G+G L +D + + G + + Sbjct: 670 EGATQLALLSAKGKFLVFGLDEVKSLSGGGRGTILMGLD---TADKLDQTVPIGAAGLRA 726 Query: 715 AGRSYNRSENDLLG------WLGKR 733 AG N+ D+L ++GKR Sbjct: 727 AGIYRNKQTEDILAGAALAPYVGKR 751 >gi|33592393|ref|NP_880037.1| DNA topoisomerase IV subunit A [Bordetella pertussis Tohama I] gi|33572038|emb|CAE41562.1| topoisomerase IV subunit A [Bordetella pertussis Tohama I] gi|332381809|gb|AEE66656.1| DNA topoisomerase IV subunit A [Bordetella pertussis CS] Length = 771 Score = 496 bits (1278), Expect = e-138, Method: Compositional matrix adjust. Identities = 273/749 (36%), Positives = 427/749 (57%), Gaps = 41/749 (5%) Query: 18 KAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSAR 77 +A++L E+ YL YA+S ++ RA+PD+ DG KPV RRI++AM MGL GA KSAR Sbjct: 19 EAITLGRYAEQAYLDYAVSVVRGRALPDVGDGQKPVQRRILYAMQAMGLAAGAKPVKSAR 78 Query: 78 IVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMT 137 +VG+V+GK HPHGDQ+ YD++VR+AQ F RYPLI G GNFG+ DGD+AAA RYTEAR+T Sbjct: 79 VVGDVLGKYHPHGDQAAYDAMVRMAQDFSLRYPLIDGHGNFGSRDGDNAAAMRYTEARLT 138 Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197 ++L+L ++E VDF Y+ EP + P++ P +L NG SGIAVGMAT IPSHN++ Sbjct: 139 PFSKLLLDELEEGTVDFVPNYDGSQQEPAMLPARLPVMLLNGASGIAVGMATEIPSHNLR 198 Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257 E+ +A +ALI NP++ E+LL + GPDF GG I+ I + Y GRG + RARW Sbjct: 199 EVAQACVALIRNPKLPQEELLALVPGPDFAGGGQIITPAADIAQIYATGRGSLKARARWQ 258 Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAK------------------RIPLLE 299 EE+ RG W +VVTE+P +++E+I E+ K + LL+ Sbjct: 259 FEEMARGQWQLVVTELPPGTSGQKVLEEIEEITNPKVRAGKKSLSAEQQQAKAVMLSLLD 318 Query: 300 DIRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPL 357 +RDES +D VR+V PK +D D + ++ + ME+ P+N+ + P+ L Sbjct: 319 AVRDESGKDAAVRLVFEPKTSRVDRDEFVNTLLAQTSMESNVPVNVVCIGTDGRPRQKSL 378 Query: 358 DGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM 417 +L+EW+A R + + RR+ R+ + R+ +L+G ++ YLN+DE+I IR ++P+ + Sbjct: 379 RDVLEEWVAFRTDTVVRRTRHRLDKVLDRIHVLEGRMVVYLNVDEVIQTIREAEEPRAAL 438 Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477 ++RF LTE Q + IL +RLR L +LE +I+ EL E+ ++ LL+ N + Sbjct: 439 MARFGLTERQAEDILEMRLRQLARLEGIKIEQELAGKREEQLRLQDLLD------NPGSL 492 Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHS 537 + +KEI + G R T E A++A L+ +++ EP+TV++S +GW+R+ + H Sbjct: 493 KRLLIKEIEGDAKQYGDDRRTLIET--AERAVLETKVVD-EPVTVIVSQKGWLRARQGHG 549 Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLN 597 D FK+GD L A TTD ++ + +G+ Y++ L S RG G+ + +IDL Sbjct: 550 HDAGQFSFKQGDDLYGAFECRTTDTLIAVGDNGRVYSVAVSGLPSARGDGQPVTTMIDLE 609 Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV-SSEEKMKLVVKV 656 IV + L+ + +G F S++ + R GK F+ + +E ++ V Sbjct: 610 AGTRIVHTIAAAPDSRWLLATRRGFGFAARLSDMSSRQRAGKQFITLEKGDELLRPVPLF 669 Query: 657 TG-DHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDS 714 G +A++ K L+F +D++ +S G+G L +D + + G + + Sbjct: 670 EGATQLALLSAKGKFLVFDLDEVKSLSGGGRGTILMGLD---TADKLDQTVPIGAAGLRA 726 Query: 715 AGRSYNRSENDLLG------WLGKRGGVG 737 AG N+ D+L ++GKR G Sbjct: 727 AGIYRNKQTEDILAGAALAPYVGKRARKG 755 >gi|164685899|ref|ZP_01945345.2| DNA topoisomerase IV, A subunit [Coxiella burnetii 'MSU Goat Q177'] gi|164601420|gb|EAX33836.2| DNA topoisomerase IV, A subunit [Coxiella burnetii 'MSU Goat Q177'] Length = 751 Score = 496 bits (1278), Expect = e-138, Method: Compositional matrix adjust. Identities = 271/752 (36%), Positives = 441/752 (58%), Gaps = 25/752 (3%) Query: 6 ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65 ++ S T +V+ L +E+ YL Y++S I +RA+P + DG KPV RRI++AMSE+G Sbjct: 1 MTKSTTPNALDVERQPLSEFVEKAYLDYSMSVILDRALPHIADGLKPVQRRIVYAMSELG 60 Query: 66 LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124 L A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF RYP + GQGN+G+ D Sbjct: 61 LKSTAKYKKSARTVGDVLGKFHPHGDTACYEAMVLMAQPFSFRYPFVDGQGNWGSADDPK 120 Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184 S AA RYTEAR++ A+L+L+ + E VD+ ++ EP + P++ PN+L NGTSGIA Sbjct: 121 SFAAMRYTEARLSAYAQLLLKELQEGTVDWIPNFDGTLKEPALLPARLPNVLLNGTSGIA 180 Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244 VGMAT IP HN+ E+ +A + L+++PE +++ ++++I GPD+PT I+ I YR Sbjct: 181 VGMATDIPPHNLTEVADACIHLLEHPEATLKDVMKFIQGPDYPTAAEIITPTAEIRTLYR 240 Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304 G+G R+RA + E + IV+T +P+QV +R++E+IA ++AK++P + DIRDE Sbjct: 241 TGQGSLRMRATYQKE-----NGEIVITALPHQVSGNRVMEQIAAQMVAKKLPAVSDIRDE 295 Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362 S + R+V+ P++ ++ LM +F+ +D+E + +N+N++ + P+V L +LK Sbjct: 296 SDHENPTRLVITPRSNRINIHELMAHLFVTTDLERSYRVNLNMIGIDGRPKVKDLISLLK 355 Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422 EWL R + + +R +R+Q + R+ +L+G +IAYLN+D IIAIIR EDKPKPV++ +F Sbjct: 356 EWLEFRMQTVRKRLQYRLQFVIERLHLLEGFIIAYLNLDAIIAIIRKEDKPKPVLMKKFK 415 Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482 L++ Q +AIL ++LR L KLEE +I+ E L E+++I+ L S + I E+ Sbjct: 416 LSDRQAEAILEIKLRQLAKLEEKKIRDEQAILTKERDEIEKTLASKTKLKKLIRGELAAD 475 Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542 KE + G +R + K ++ M+ EP+TVV+S +GWIR+ K H V+ Sbjct: 476 KEKY------GDKRCSPLMERPIAKMIREEEMVPSEPVTVVLSKKGWIRAAKGHEVEGET 529 Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602 L+++ GD + T + + L + GK+Y LPA L S RG G+ + + Sbjct: 530 LNYRSGDEFLMQAQGRTNELAVFLDSAGKSYALPAHTLPSARGLGDPLTSRLKPASGAHF 589 Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV---TGD 659 V + L+ S G F+ + R GK +K+ ++ L +V Sbjct: 590 VGILMGADDDLFLLASDAGYGFLTSLVNLHVKNRSGKAVIKLPKGAQVMLPQRVHDKETQ 649 Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGIS--DVICFKIC-----EGLTWI 712 ++A + +LL+F I ++PE+ +GKG ++ ++ + C + LT + Sbjct: 650 YLAAITSEGRLLLFPIAELPELPKGKGNKIIQIAPARVANREEYCVALAVLHEKSSLT-L 708 Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGF 744 S R + +DL + G+RG G+ +P+GF Sbjct: 709 YSGKRRFTLKPDDLAQFQGERGRRGNKLPRGF 740 >gi|212217840|ref|YP_002304627.1| DNA topoisomerase IV subunit A [Coxiella burnetii CbuK_Q154] gi|212012102|gb|ACJ19482.1| topoisomerase IV subunit A [Coxiella burnetii CbuK_Q154] Length = 753 Score = 496 bits (1278), Expect = e-138, Method: Compositional matrix adjust. Identities = 271/752 (36%), Positives = 441/752 (58%), Gaps = 25/752 (3%) Query: 6 ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65 ++ S T +V+ L +E+ YL Y++S I +RA+P + DG KPV RRI++AMSE+G Sbjct: 3 MTKSTTPNALDVERQPLSEFVEKAYLDYSMSVILDRALPHIADGLKPVQRRIVYAMSELG 62 Query: 66 LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124 L A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF RYP + GQGN+G+ D Sbjct: 63 LKSTAKYKKSARTVGDVLGKFHPHGDTACYEAMVLMAQPFSFRYPFVDGQGNWGSADDPK 122 Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184 S AA RYTEAR++ A+L+L+ + E VD+ ++ EP + P++ PN+L NGTSGIA Sbjct: 123 SFAAMRYTEARLSAYAQLLLKELQEGTVDWIPNFDGTLKEPALLPARLPNVLLNGTSGIA 182 Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244 VGMAT IP HN+ E+ +A + L+++PE +++ ++++I GPD+PT I+ I YR Sbjct: 183 VGMATDIPPHNLTEVADACIHLLEHPEATLKDVMKFIQGPDYPTAAEIITPTAEIRTLYR 242 Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304 G+G R+RA + E + IV+T +P+QV +R++E+IA ++AK++P + DIRDE Sbjct: 243 TGQGSLRMRATYQKE-----NGEIVITALPHQVSGNRVMEQIAAQMVAKKLPAVSDIRDE 297 Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362 S + R+V+ P++ ++ LM +F+ +D+E + +N+N++ + P+V L +LK Sbjct: 298 SDHENPTRLVITPRSNRINIHELMAHLFVTTDLERSYRVNLNMIGIDGRPKVKDLISLLK 357 Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422 EWL R + + +R +R+Q + R+ +L+G +IAYLN+D IIAIIR EDKPKPV++ +F Sbjct: 358 EWLEFRMQTVRKRLQYRLQFVIERLHLLEGFIIAYLNLDAIIAIIRKEDKPKPVLMKKFK 417 Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482 L++ Q +AIL ++LR L KLEE +I+ E L E+++I+ L S + I E+ Sbjct: 418 LSDRQAEAILEIKLRQLAKLEEKKIRDEQAILTKERDEIEKTLASKTKLKKLIRGELAAD 477 Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542 KE + G +R + K ++ M+ EP+TVV+S +GWIR+ K H V+ Sbjct: 478 KEKY------GDKRCSPLMERPIAKMIREEEMVPSEPVTVVLSKKGWIRAAKGHEVEGET 531 Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602 L+++ GD + T + + L + GK+Y LPA L S RG G+ + + Sbjct: 532 LNYRSGDEFLMQAQGRTNELAVFLDSAGKSYALPAHTLPSARGLGDPLTSRLKPASGAHF 591 Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV---TGD 659 V + L+ S G F+ + R GK +K+ ++ L +V Sbjct: 592 VGILMGADDDLFLLASDAGYGFLTSLVNLHVKNRSGKAVIKLPKGAQVMLPQRVHDKETQ 651 Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGIS--DVICFKIC-----EGLTWI 712 ++A + +LL+F I ++PE+ +GKG ++ ++ + C + LT + Sbjct: 652 YLAAITSEGRLLLFPIAELPELPKGKGNKIIQIAPARVANREEYCVALAVLHEKSSLT-L 710 Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGF 744 S R + +DL + G+RG G+ +P+GF Sbjct: 711 YSGKRRFTLKPDDLAQFQGERGRRGNKLPRGF 742 >gi|91794566|ref|YP_564217.1| DNA topoisomerase IV subunit A [Shewanella denitrificans OS217] gi|91716568|gb|ABE56494.1| DNA topoisomerase IV subunit A [Shewanella denitrificans OS217] Length = 770 Score = 496 bits (1277), Expect = e-138, Method: Compositional matrix adjust. Identities = 270/754 (35%), Positives = 440/754 (58%), Gaps = 25/754 (3%) Query: 6 ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65 +S++ L + V+ + LR EE YL Y++ I +RA+P + DG KPV RRII+AMSE+G Sbjct: 1 MSDAINLSLDGVEQMPLRRFTEEAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELG 60 Query: 66 LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124 L + KKSAR VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D Sbjct: 61 LSAQSKHKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPK 120 Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184 S AA RYTEAR+++ +E++L + + VD+ D ++ EP P++ P++L NG +GIA Sbjct: 121 SFAAMRYTEARLSKFSEVLLSELGQGTVDWGDNFDGTMKEPKTLPARLPHILLNGITGIA 180 Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244 VGMAT +P HNV+E+ A + L+D P+ + +LLE + GPD+PT I+ I + Y Sbjct: 181 VGMATDVPPHNVRELVAACVELLDEPKTELARLLEIVPGPDYPTEAEIITPSADIAKIYE 240 Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304 GRG + RA + +E+ I++T +P+Q +++E+IA +IAK++P++ D+RDE Sbjct: 241 TGRGSIKARAVYTLEQ-----GEIIITALPHQAGSGKILEQIANQMIAKKLPMVADLRDE 295 Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362 S + VR+V+ P++ +D D LM +F +D++ F +N+NVL + PQV L +L Sbjct: 296 SDHENPVRLVIVPRSNRVDCDQLMAHLFATTDLQKSFRVNLNVLGLDGRPQVKGLKEMLS 355 Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422 EWL +R + RR +R++ + R+ IL LLIA+LNIDE+I IIR ++ PK + +RF+ Sbjct: 356 EWLVYRVGTVTRRLEYRLEKVLARLHILDALLIAFLNIDEVIEIIRYQEDPKSELKARFN 415 Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482 LT+ Q +AIL+L+LR L KLEE++I +E + L AE++K+ +L S ++ + E+ Sbjct: 416 LTDKQAEAILDLKLRHLAKLEEFKITAEQEELAAERDKLQLILGSERRLKTLVKKELIAD 475 Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542 E + + RR+ E S + KA QQ + E +TVV+S +GW+R K H VD A Sbjct: 476 GETYGDA-----RRSPIVERSES-KALTQQELTPTEAVTVVLSEKGWVRCAKGHDVDGQA 529 Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602 L +K GDS + + + + T G+A+ + L S R GE I ++ + + Sbjct: 530 LSYKSGDSYLGSAIGKSNQAAVFIDTSGRAFATDSHTLPSARSQGEPITTRFNMAPGESM 589 Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-- 660 + D + L+ S G FI S++ + + GK L + + + ++ Sbjct: 590 QHVLMGDDDQRYLMASDAGYGFICSFSDMASRNKAGKALLTLPENAQSLMPKRIDSSQSP 649 Query: 661 --VAVVGENRKLLIFSIDQIPEMSRGKG---VRLQSYKDGGISDV---ICFKICEGLTWI 712 +A+ E R +L+F +D +P++S+GKG + + S + ++ +C + + Sbjct: 650 SILAITNEGR-MLMFELDALPQLSKGKGNKIIGIPSERSKAREELLAHLCLVPADCSVTL 708 Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746 + R +DL + G+RG G+ +P+G R Sbjct: 709 WAGKRKLTLKPSDLEHYRGERGRRGAKLPRGLQR 742 >gi|161830937|ref|YP_001597685.1| DNA topoisomerase IV subunit A [Coxiella burnetii RSA 331] gi|161762804|gb|ABX78446.1| DNA topoisomerase IV, A subunit [Coxiella burnetii RSA 331] Length = 751 Score = 496 bits (1276), Expect = e-138, Method: Compositional matrix adjust. Identities = 271/752 (36%), Positives = 441/752 (58%), Gaps = 25/752 (3%) Query: 6 ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65 ++ S T +V+ L +E+ YL Y++S I +RA+P + DG KPV RRI++AMSE+G Sbjct: 1 MTKSTTPNALDVERQPLSEFVEKAYLDYSMSVILDRALPHIADGLKPVQRRIVYAMSELG 60 Query: 66 LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124 L A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF RYP + GQGN+G+ D Sbjct: 61 LKSTAKYKKSARTVGDVLGKFHPHGDTACYEAMVLMAQPFSFRYPFVDGQGNWGSADDPK 120 Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184 S AA RYTEAR++ A+L+L+ + E VD+ ++ EP + P++ PN+L NGTSGIA Sbjct: 121 SFAAMRYTEARLSAYAQLLLKELQEGTVDWIPNFDGTLKEPALLPARLPNVLLNGTSGIA 180 Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244 VGMAT IP HN+ E+ +A + L+++PE +++ ++++I GPD+PT I+ I YR Sbjct: 181 VGMATDIPPHNLTEVADACIHLLEHPEATLKDVMKFIQGPDYPTAAEIITPTAEIRTLYR 240 Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304 G+G R+RA + E + IV+T +P+QV +R++E+IA ++AK++P + DIRDE Sbjct: 241 TGQGSLRMRATYQKE-----NGEIVITALPHQVSGNRVMEQIAAQMVAKKLPAVSDIRDE 295 Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362 S + R+V+ P++ ++ LM +F+ +D+E + +N+N++ + P+V L +LK Sbjct: 296 SDHENPTRLVITPRSNRINIHELMAHLFVTTDLERSYRVNLNMIGIDGRPKVKDLISLLK 355 Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422 EWL R + + +R +R+Q + R+ +L+G +IAYLN+D IIAIIR EDKPKPV++ +F Sbjct: 356 EWLEFRMQTVRKRLQYRLQFVIERLHLLEGFIIAYLNLDAIIAIIRKEDKPKPVLMKKFK 415 Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482 L++ Q +AIL ++LR L KLEE +I+ E L E+++I+ L S + I E+ Sbjct: 416 LSDRQAEAILEIKLRQLAKLEEKKIRDEQAILTKERDEIEKTLASKTKLKKLIRGELAAD 475 Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542 KE + G +R + K ++ M+ EP+TVV+S +GWIR+ K H V+ Sbjct: 476 KEKY------GDKRCSPLMERPIAKMIREEEMVPSEPVTVVLSKKGWIRAAKGHEVEGET 529 Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602 L+++ GD + T + + L + GK+Y LPA L S RG G+ + + Sbjct: 530 LNYRSGDEFLMQAQGRTNELAVFLDSAGKSYALPAHILPSARGLGDPLTSRLKPASGAHF 589 Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV---TGD 659 V + L+ S G F+ + R GK +K+ ++ L +V Sbjct: 590 VGVLMGADDDLFLLASDAGYGFLTSLVNLHVKNRSGKAVIKLPKGAQVMLPQRVHDKETQ 649 Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGIS--DVICFKIC-----EGLTWI 712 ++A + +LL+F I ++PE+ +GKG ++ ++ + C + LT + Sbjct: 650 YLAAITSEGRLLLFPIAELPELPKGKGNKIIQIAPARVANREEYCVALAVLHEKSSLT-L 708 Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGF 744 S R + +DL + G+RG G+ +P+GF Sbjct: 709 YSGKRRFTLKPDDLAQFQGERGRRGNKLPRGF 740 >gi|307249786|ref|ZP_07531764.1| DNA topoisomerase 4 subunit A [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306858201|gb|EFM90279.1| DNA topoisomerase 4 subunit A [Actinobacillus pleuropneumoniae serovar 4 str. M62] Length = 748 Score = 496 bits (1276), Expect = e-138, Method: Compositional matrix adjust. Identities = 268/743 (36%), Positives = 449/743 (60%), Gaps = 25/743 (3%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 E V+ + ++ E+ YL Y++ I +RA+P + DG KPV RRII+AMSE+GL+ A +KK Sbjct: 8 EGVEQMPIKRFTEDAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAMSELGLNASAKYKK 67 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTE 133 SAR VG+V+GK HPHGD + Y+++V +AQPF RYPLI GQGN+G D S AA RYTE Sbjct: 68 SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLIDGQGNWGAPDDPKSFAAMRYTE 127 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 ++++++AE++L + + VD++ ++ EP P++ P++L NGT GIAVGMAT IP Sbjct: 128 SKLSKMAEVLLGELGQGTVDYQPNFDGSLEEPKYLPARLPHILLNGTMGIAVGMATDIPP 187 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E+ EA++ L++NP+ S+ +L+ + GPD+PT I+ + I + Y G+G ++R Sbjct: 188 HNINELAEASVMLLENPKASLAELMTVVQGPDYPTEAEIITPKADIAKMYEQGKGSIKMR 247 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRI 311 A W E+ IV++ +P+Q S++IE+IA + K++P+++DIRDES + +RI Sbjct: 248 AVWKKED-----GEIVISALPHQASPSKVIEQIATQMRNKKLPMVDDIRDESDHENPIRI 302 Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371 V+ P++ +D + LM+ +F +D+E + +NMN++ + P V L IL EWL RR Sbjct: 303 VIVPRSNRIDFEALMDHLFATTDLEKSYRVNMNMIGLDGKPAVKNLHTILTEWLTFRRTT 362 Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431 + RR ++R+ I R+ IL+GL+IA+LNIDE+I IIRNED+PK +++RF+L+E Q +AI Sbjct: 363 VTRRLNYRLDKILNRLHILEGLMIAFLNIDEVIEIIRNEDEPKTALMARFNLSEAQSEAI 422 Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491 LNLRLR L KLEE+++++E L E++++ L S ++ I EI+ + F+ Sbjct: 423 LNLRLRHLAKLEEHELQAEKSQLEKERDELQLTLGSERRLNTLIKKEIQADAKAFASP-- 480 Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551 RR+ E + A KA + + E +TV++S +GW+R K H +D+ L ++ GD Sbjct: 481 ---RRSPLVERAEA-KAISESDLTPTEDVTVILSEKGWVRCAKGHDIDVQGLSYRAGDGY 536 Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611 H + ++ L + G+AY L +L S R GE + I L + + +S Sbjct: 537 LAHAHGRSNQPVVFLDSTGRAYALDPTSLPSARSQGEPLTGKITLPEGATVQQVLMANSD 596 Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVAVVGENR 668 K+L+ S G FI ++++ + GK + ++ K+ +L+ + + Sbjct: 597 TKVLMASDSGYGFICSFEDLVSRNKAGKAVISLTENAKVLPPQLIENDAELSLVAMSSVG 656 Query: 669 KLLIFSIDQIPEMSRGKGVRL-----QSYKDGG--ISDVICFKICEGLTWIDSAGRSYNR 721 ++L+F I ++P++S+GKG ++ Q+ K+G ++ ++ K + L ++ S R Sbjct: 657 RMLVFPITELPQLSKGKGNKIINISAQAAKEGNELLARLLLVKPTQSLVFV-SGKRKITL 715 Query: 722 SENDLLGWLGKRGGVGSLVPKGF 744 +D+ + G+R GS + +G Sbjct: 716 KPSDIDNYRGERARKGSQLVRGL 738 >gi|145629699|ref|ZP_01785495.1| DNA topoisomerase IV subunit A [Haemophilus influenzae 22.1-21] gi|144978036|gb|EDJ87815.1| DNA topoisomerase IV subunit A [Haemophilus influenzae 22.1-21] Length = 747 Score = 496 bits (1276), Expect = e-138, Method: Compositional matrix adjust. Identities = 278/743 (37%), Positives = 440/743 (59%), Gaps = 26/743 (3%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 E ++ + LR E+ YL Y++ I +RA+P + DG KPV RRI++AMSE+GL+ A +KK Sbjct: 7 EGIEQMPLRTFTEKAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKYKK 66 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTE 133 SAR VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S AA RYTE Sbjct: 67 SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 126 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 +R+++++E++L + + VD++ ++ +EP P++ P++L NGT+GIAVGMAT IP Sbjct: 127 SRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATDIPP 186 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ EI +AA+ L+DNP+ ++ +LE + GPDFPT I+ + I + Y GRG ++R Sbjct: 187 HNINEIADAAVMLLDNPKARLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRGSIKMR 246 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRI 311 A W E+ I+++ +P+Q S++I +IA+ + AK++P+LEDIRDE+ + +RI Sbjct: 247 ATWKKED-----GEIIISALPHQSSPSKVIAQIADQMTAKKLPMLEDIRDEADHENPIRI 301 Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371 VL P++ +D D LM +F +D+E + +NMN++ + P V L IL EWL RR Sbjct: 302 VLAPRSNRVDTDALMAHLFATTDLEKSYRVNMNMIGLDHKPAVKGLLEILNEWLTFRRTT 361 Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431 + RR +R+ + R+ IL+GL+IA+LNIDE+I IIR+ED PK +++RF+L++ Q DAI Sbjct: 362 VTRRLQYRLDKVLSRLHILEGLMIAFLNIDEVIEIIRHEDDPKVELMARFNLSDEQADAI 421 Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491 LNLRLR L KLEE Q+K+E D L E+ ++++L S ++ I EI+E + ++ Sbjct: 422 LNLRLRHLAKLEENQLKAEQDELEKERLNLEAILGSERRLNTLIKKEIQEDAKKYASP-- 479 Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551 R + E A K + M EP+TV++S GW+R K H +D +L +K GDS Sbjct: 480 ---RMSQLVEREEA-KMISESDMTPAEPVTVILSEMGWVRCAKGHDIDPKSLSYKAGDSY 535 Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611 + + + + G++Y L +L S R GE + ++L I + Sbjct: 536 LAHACGKSNQAVAFIDSTGRSYALDPLSLPSARSQGEPLTGKLNLPTGATIEYVVMASEQ 595 Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVAVVGENR 668 +LL+ S G FI + ++IA + GK + + K+ K ++ T VA+ R Sbjct: 596 QELLMASDAGYGFICKFEDLIARNKTGKALISLPENAKVLKPKTLINSTALVVAITSAGR 655 Query: 669 KLLIFSIDQIPEMSRGKGVRL-----QSYKDGG--ISDVICFKICEGLTWIDSAGRSYNR 721 +LIF +P +S+GKG ++ + KD ++ ++ L + S R Sbjct: 656 -MLIFPAQDLPVLSKGKGNKMITILAANAKDRSELLTKLLLISDQASLEFY-SGKRKIVL 713 Query: 722 SENDLLGWLGKRGGVGSLVPKGF 744 DL + +RG GS +P+G Sbjct: 714 KPEDLQKFRAERGRKGSTLPRGL 736 >gi|29655151|ref|NP_820843.1| DNA topoisomerase IV subunit A [Coxiella burnetii RSA 493] gi|29542420|gb|AAO91357.1| topoisomerase IV subunit A [Coxiella burnetii RSA 493] Length = 753 Score = 496 bits (1276), Expect = e-138, Method: Compositional matrix adjust. Identities = 271/752 (36%), Positives = 441/752 (58%), Gaps = 25/752 (3%) Query: 6 ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65 ++ S T +V+ L +E+ YL Y++S I +RA+P + DG KPV RRI++AMSE+G Sbjct: 3 MTKSTTPNALDVERQPLSEFVEKAYLDYSMSVILDRALPHIADGLKPVQRRIVYAMSELG 62 Query: 66 LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124 L A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF RYP + GQGN+G+ D Sbjct: 63 LKSTAKYKKSARTVGDVLGKFHPHGDTACYEAMVLMAQPFSFRYPFVDGQGNWGSADDPK 122 Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184 S AA RYTEAR++ A+L+L+ + E VD+ ++ EP + P++ PN+L NGTSGIA Sbjct: 123 SFAAMRYTEARLSAYAQLLLKELQEGTVDWIPNFDGTLKEPALLPARLPNVLLNGTSGIA 182 Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244 VGMAT IP HN+ E+ +A + L+++PE +++ ++++I GPD+PT I+ I YR Sbjct: 183 VGMATDIPPHNLTEVADACIHLLEHPEATLKDVMKFIQGPDYPTAAEIITPTAEIRTLYR 242 Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304 G+G R+RA + E + IV+T +P+QV +R++E+IA ++AK++P + DIRDE Sbjct: 243 TGQGSLRMRATYQKE-----NGEIVITALPHQVSGNRVMEQIAAQMVAKKLPAVSDIRDE 297 Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362 S + R+V+ P++ ++ LM +F+ +D+E + +N+N++ + P+V L +LK Sbjct: 298 SDHENPTRLVITPRSNRINIHELMAHLFVTTDLERSYRVNLNMIGIDGRPKVKDLISLLK 357 Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422 EWL R + + +R +R+Q + R+ +L+G +IAYLN+D IIAIIR EDKPKPV++ +F Sbjct: 358 EWLEFRMQTVRKRLQYRLQFVIERLHLLEGFIIAYLNLDAIIAIIRKEDKPKPVLMKKFK 417 Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482 L++ Q +AIL ++LR L KLEE +I+ E L E+++I+ L S + I E+ Sbjct: 418 LSDRQAEAILEIKLRQLAKLEEKKIRDEQAILTKERDEIEKTLASKTKLKKLIRGELAAD 477 Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542 KE + G +R + K ++ M+ EP+TVV+S +GWIR+ K H V+ Sbjct: 478 KEKY------GDKRCSPLMERPIAKMIREEEMVPSEPVTVVLSKKGWIRAAKGHEVEGET 531 Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602 L+++ GD + T + + L + GK+Y LPA L S RG G+ + + Sbjct: 532 LNYRSGDEFLMQAQGRTNELAVFLDSAGKSYALPAHILPSARGLGDPLTSRLKPASGAHF 591 Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV---TGD 659 V + L+ S G F+ + R GK +K+ ++ L +V Sbjct: 592 VGVLMGADDDLFLLASDAGYGFLTSLVNLHVKNRSGKAVIKLPKGAQVMLPQRVHDKETQ 651 Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGIS--DVICFKIC-----EGLTWI 712 ++A + +LL+F I ++PE+ +GKG ++ ++ + C + LT + Sbjct: 652 YLAAITSEGRLLLFPIAELPELPKGKGNKIIQIAPARVANREEYCVALAVLHEKSSLT-L 710 Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGF 744 S R + +DL + G+RG G+ +P+GF Sbjct: 711 YSGKRRFTLKPDDLAQFQGERGRRGNKLPRGF 742 >gi|24375385|ref|NP_719428.1| DNA topoisomerase IV subunit A [Shewanella oneidensis MR-1] gi|24350215|gb|AAN56872.1|AE015822_4 DNA topoisomerase IV, A subunit [Shewanella oneidensis MR-1] Length = 758 Score = 496 bits (1276), Expect = e-138, Method: Compositional matrix adjust. Identities = 271/754 (35%), Positives = 447/754 (59%), Gaps = 25/754 (3%) Query: 6 ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65 +S++ L + V+ + LR EE YL Y++ I +RA+P + DG KPV RRII+AMSE+G Sbjct: 1 MSDAIKLSLDGVEQMPLRRFTEEAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELG 60 Query: 66 LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124 L + KKSAR VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D Sbjct: 61 LSAQSKHKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPK 120 Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184 S AA RYTEAR+++ +E++L + + V++ ++ EP V P++ P++L NG +GIA Sbjct: 121 SFAAMRYTEARLSKFSEVLLSELGQGTVEWGANFDGTLKEPKVLPARLPHILLNGITGIA 180 Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244 VGMAT IP HNV+E+ A +AL+D P++ +E+L+ Y+ GPD+PT I+ I + Y Sbjct: 181 VGMATDIPPHNVRELVNACVALLDEPKLDLEQLMAYVPGPDYPTEAEIITPAADIAKIYE 240 Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304 GRG + RA + VE + IV+T +P+Q +++E IA + AK++P++ D+RDE Sbjct: 241 TGRGSLKARAVYSVE-----AGEIVITALPHQASSGKILELIAAQMQAKKLPMVADLRDE 295 Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362 S + VR+V+ P++ +D D LM +F +D+E F +N+NVL + P+V L +L Sbjct: 296 SDHENPVRLVIVPRSNRVDCDQLMAHLFATTDLEKSFRVNLNVLGLDGRPRVKGLKDLLT 355 Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422 EWL R + + RR +R+ + R+ IL+ L+IA+LNIDE+I IIR D+PK +++RF+ Sbjct: 356 EWLEFRVDTVRRRLEYRLDKVLARLHILEALMIAFLNIDEVIEIIRFHDEPKAELMARFN 415 Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482 LT+ Q +AIL L+LR L KLEE++IK+E D L AE+EK++ LL S ++ I E+ + Sbjct: 416 LTDKQAEAILELKLRHLAKLEEFKIKAEQDELEAEREKLEQLLGSERRLKTLIKKELIQD 475 Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542 E + RR+ E + KA +Q + EP+TVV+S++GW+RS K H +D + Sbjct: 476 GETYGDD-----RRSPIVERHES-KALTEQELTPSEPVTVVLSDKGWVRSAKGHDIDAES 529 Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602 L +K GD + + + + + G+A+ + +L S R GE I ++ + + Sbjct: 530 LSYKAGDQYLCSAMGRSNQAAVFIDSSGRAFATDSHSLPSARSQGEPITTRFNMAPGETM 589 Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-- 660 + + L+ + G FI +++++ + GK L + + K + + Sbjct: 590 QHVILGEDEQCFLLATDAGYGFICTFNDMVSRNKAGKALLSLPTNAKSLPPKPIDRNREM 649 Query: 661 --VAVVGENRKLLIFSIDQIPEMSRGKG---VRLQSYKDGGISDVIC-FKICEGLTWID- 713 +A+ E R +L+FS++ +P++S+GKG + + S + +++ ++ T + Sbjct: 650 SILAITNEGR-MLLFSLEALPQLSKGKGNKIIGIPSERAKNREELMTHLQLVPADTSVTL 708 Query: 714 -SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746 + R +DL + G+RG G+ +P+G R Sbjct: 709 WAGKRKLTLKPSDLEHYRGERGRRGAKLPRGLQR 742 >gi|212211891|ref|YP_002302827.1| DNA topoisomerase IV subunit A [Coxiella burnetii CbuG_Q212] gi|212010301|gb|ACJ17682.1| topoisomerase IV subunit A [Coxiella burnetii CbuG_Q212] Length = 753 Score = 495 bits (1275), Expect = e-137, Method: Compositional matrix adjust. Identities = 271/752 (36%), Positives = 441/752 (58%), Gaps = 25/752 (3%) Query: 6 ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65 ++ S T +V+ L +E+ YL Y++S I +RA+P + DG KPV RRI++AMSE+G Sbjct: 3 MTKSTTPNALDVERQPLSEFVEKAYLDYSMSVILDRALPHIADGLKPVQRRIVYAMSELG 62 Query: 66 LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124 L A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF RYP + GQGN+G+ D Sbjct: 63 LKSTAKYKKSARTVGDVLGKFHPHGDTACYEAMVLMAQPFSFRYPFVDGQGNWGSADDPK 122 Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184 S AA RYTEAR++ A+L+L+ + E VD+ ++ EP + P++ PN+L NGTSGIA Sbjct: 123 SFAAMRYTEARLSAYAQLLLKELQEGTVDWIPNFDGTLKEPALLPARLPNVLLNGTSGIA 182 Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244 VGMAT IP HN+ E+ +A + L+++PE +++ ++++I GPD+PT I+ I YR Sbjct: 183 VGMATDIPPHNLTEVADACIHLLEHPEATLKDVMKFIQGPDYPTAAEIITPTAEIRTLYR 242 Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304 G+G R+RA + E + IV+T +P+QV +R++E+IA ++AK++P + DIRDE Sbjct: 243 TGQGSLRMRATYQKE-----NGEIVITALPHQVSGNRVMEQIAAQMVAKKLPAVSDIRDE 297 Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362 S + R+V+ P++ ++ LM +F+ +D+E + +N+N++ + P+V L +LK Sbjct: 298 SDHENPTRLVITPRSNRINIHELMAHLFVTTDLERSYRVNLNMIGIDGRPKVKDLISLLK 357 Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422 EWL R + + +R +R+Q + R+ +L+G +IAYLN+D IIAIIR EDKPKPV++ +F Sbjct: 358 EWLEFRMQTVRKRLQYRLQFVIERLHLLEGFIIAYLNLDAIIAIIRKEDKPKPVLMKKFK 417 Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482 L++ Q +AIL ++LR L KLEE +I+ E L E+++I+ L S + I E+ Sbjct: 418 LSDRQAEAILEIKLRQLAKLEEKKIRDEQAILTKERDEIEKTLASKTKLKKLIRGELAAD 477 Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542 KE + G +R + K ++ M+ EP+TVV+S +GWIR+ K H V+ Sbjct: 478 KEKY------GDKRCSPLMERPIAKMIREEEMVPSEPVTVVLSKKGWIRAAKGHEVEGET 531 Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602 L+++ GD + T + + L + GK+Y LPA L S RG G+ + + Sbjct: 532 LNYRSGDEFLMQAQGRTNELAVFLDSAGKSYALPAHILPSARGLGDPLTSRLKPASGAHF 591 Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV---TGD 659 V + L+ S G F+ + R GK +K+ ++ L +V Sbjct: 592 VGVLMGADDDLFLLASDAGYGFLTSLVNLHVKNRSGKAVIKLPKGAQVMLPQRVHDKETQ 651 Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGIS--DVICFKIC-----EGLTWI 712 ++A + +LL+F I ++PE+ +GKG ++ ++ + C + LT + Sbjct: 652 YLAAITSEGRLLLFPIAELPELPKGKGNKIIQIAPSRVANREEYCVALAVLHEKSSLT-L 710 Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGF 744 S R + +DL + G+RG G+ +P+GF Sbjct: 711 YSGKRRFTLKPDDLAQFQGERGRRGNKLPRGF 742 >gi|28872074|ref|NP_794693.1| DNA topoisomerase IV subunit A [Pseudomonas syringae pv. tomato str. DC3000] gi|28855328|gb|AAO58388.1| DNA topoisomerase IV, A subunit [Pseudomonas syringae pv. tomato str. DC3000] gi|331014591|gb|EGH94647.1| DNA topoisomerase IV subunit A [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 751 Score = 495 bits (1275), Expect = e-137, Method: Compositional matrix adjust. Identities = 271/761 (35%), Positives = 447/761 (58%), Gaps = 29/761 (3%) Query: 6 ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65 +S+S L + V+ SL E+ YL Y++ I +RA+P + DG KPV RRII+AMSE+G Sbjct: 1 MSDSLDLSLDGVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELG 60 Query: 66 LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124 L A KKSAR VG+V+GK HPHGD + Y+++V +AQPF RY L+ GQGN+G D Sbjct: 61 LGADAKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPDDPK 120 Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184 S AA RYTEAR+++ +E++L + + D+ ++ EP V P++ PN+L NGT+GIA Sbjct: 121 SFAAMRYTEARLSRYSEVLLSELGQGTADWVPNFDGTLDEPAVLPARLPNILLNGTTGIA 180 Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244 VGMAT +P HN++E+ A + L+D P+ +I +L E+I+GPD+PT I+ R +++ Y Sbjct: 181 VGMATDVPPHNLREVASACVHLLDEPKATIPELCEHILGPDYPTEAEIITPRADLLKIYE 240 Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304 GRG R+RA + +E+ I+VT +P+QV ++++E+IA + AK++P++ D+RDE Sbjct: 241 TGRGSVRMRAVYRIED-----GDIIVTSLPHQVSGAKVLEQIAAQMQAKKLPMVADLRDE 295 Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362 S + RIV+ P++ ++ D LM+ +F +++E+ + +N+N++ + PQ+ L +L Sbjct: 296 SDHENPCRIVIIPRSNRVELDELMQHLFATTELESSYRVNINIIGLDGKPQLKNLKTLLS 355 Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422 EWL R + RR FR+ ++ R+ +L GLL AYLN+DE+I IIR + PK +++RF Sbjct: 356 EWLTFRIGTVRRRLQFRLDKVEHRLHLLDGLLTAYLNLDEVIHIIRTAEHPKAELIARFG 415 Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482 L+E Q D IL+ RLR L +LEE +++SE D L E+ K+ +LL S + + E+ Sbjct: 416 LSEIQADYILDTRLRQLARLEEMKLRSEQDALRKEQAKLQALLGSESKLRKLVRAELIAD 475 Query: 483 KEIFSKSTDLGRRRTTFCEVSRAD-KATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS 541 E + RR+ V+RA+ KA + ++ EP+TVV+S +GW+R K H +D + Sbjct: 476 AETYGDD-----RRSPI--VARAEAKALSENELMPTEPVTVVLSEKGWVRCAKGHDIDAT 528 Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD 601 L +K GD K + + + + + G++Y++ A L S RG GE + + Sbjct: 529 GLSYKAGDGFKTSAIGRSNQFAVFIDSTGRSYSVAAHTLPSARGQGEPLTGKLQPPPGAT 588 Query: 602 IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--- 658 + + ++ S G F+V+ ++ A + GK L + K+ L V Sbjct: 589 FECVLLPEDDALYVIASDAGYGFVVKGEDLQAKNKAGKALLSLPGGAKVILPRPVADREL 648 Query: 659 DHVAVVGENRKLLIFSIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTW 711 + +A V +LL+F + +P++ +GKG ++ + ++ ++D+ I +G T Sbjct: 649 NWLAAVTTEGRLLVFKVSDLPQLGKGKGNKIIGIPGERVASREEYVTDLAV--IAQGATL 706 Query: 712 IDSAG-RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751 + AG R+ + DL + G+RG G+ +P+GF R L Sbjct: 707 VLQAGKRTLSLKPEDLEHYKGERGRRGNKLPRGFQRVDALL 747 >gi|323498027|ref|ZP_08103035.1| DNA topoisomerase IV subunit A [Vibrio sinaloensis DSM 21326] gi|323316903|gb|EGA69906.1| DNA topoisomerase IV subunit A [Vibrio sinaloensis DSM 21326] Length = 760 Score = 495 bits (1275), Expect = e-137, Method: Compositional matrix adjust. Identities = 264/687 (38%), Positives = 422/687 (61%), Gaps = 17/687 (2%) Query: 9 SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68 S + + V+ + +R E+ YL Y++ I +RA+P + DG KPV RRII+AMSE+GL Sbjct: 2 STEITYDGVEQLPMRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61 Query: 69 GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAA 127 A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S A Sbjct: 62 AAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFA 121 Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187 A RYTEA++++ AE++L + + V+++ ++ EP + P++ P++L NG +GIAVGM Sbjct: 122 AMRYTEAKLSKFAEVLLGELGQGTVEWQPNFDGTMKEPQMLPARLPHILLNGVTGIAVGM 181 Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247 AT IP HNV+E+ AA+ LIDNP+ + ++ ++ GPD+PT I+ + + + YR GR Sbjct: 182 ATDIPPHNVREVANAAVHLIDNPKSELADVMNFVQGPDYPTEAEIISPKADLEKIYRTGR 241 Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307 G ++RA W E GS IV+T +P+QV ++L+E+IA + AK++P+++D+RDES Sbjct: 242 GSIKMRAVWHKE----GS-DIVITSLPHQVSGAKLLEQIANQMRAKKLPMVDDLRDESDH 296 Query: 308 D--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365 + RIV+ P++ +D D LM +F +D+E F +N+N++ + PQV L IL EW+ Sbjct: 297 ENPTRIVVVPRSNRIDCDQLMNHLFASTDLEKNFRVNLNMIGLDNRPQVKGLVQILSEWI 356 Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425 RR + RR R+ + R+ IL+GLL+AYLN+DE+I IIR ED PK V+++RF +TE Sbjct: 357 EFRRSTVRRRLQHRLDKVMARLHILEGLLVAYLNLDEVIEIIRTEDDPKAVLMARFGITE 416 Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485 Q DAIL+ +LR L KLEE +I+ E D L E+EK++ LL S ++ + EI+ E Sbjct: 417 IQADAILDTKLRHLAKLEEMKIRGEQDELEKEREKLEKLLGSERRLNTLLKKEIQADAEK 476 Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545 + RR+ E + A KA ++ ++ EPITVV+S +GWIR K H VD L + Sbjct: 477 YGDD-----RRSPLVERAEA-KALTERDLVPSEPITVVLSEKGWIRHAKGHDVDAEGLSY 530 Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605 K GD + + + +DG++Y+L + +L S R GE I +++ I Sbjct: 531 KSGDKYLAHARGKSNQQAVFFGSDGRSYSLESHSLPSARSQGEPITGRLNITAGSAIRQV 590 Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVA 662 + + LV S G F+ + S++++ R GK + + + ++ K + + D + Sbjct: 591 IMGEEEQLWLVGSDAGYGFVCKGSDLLSKNRSGKALVTLPANSEVMEPKTIADLDSDEIV 650 Query: 663 VVGENRKLLIFSIDQIPEMSRGKGVRL 689 + ++L+F I +P++++GKG ++ Sbjct: 651 AITNQGRMLLFPIKDLPQLAKGKGNKI 677 >gi|253996178|ref|YP_003048242.1| DNA topoisomerase IV subunit A [Methylotenera mobilis JLW8] gi|253982857|gb|ACT47715.1| DNA topoisomerase IV, A subunit [Methylotenera mobilis JLW8] Length = 761 Score = 495 bits (1275), Expect = e-137, Method: Compositional matrix adjust. Identities = 270/716 (37%), Positives = 409/716 (57%), Gaps = 36/716 (5%) Query: 1 MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60 M + N+N EEN AV + EE YLAYA+S +K RA+P + DG KPV RRI++A Sbjct: 1 MDTSMLENNN---EEN--AVPIGEYAEEAYLAYAVSVVKGRALPSVEDGQKPVQRRILYA 55 Query: 61 MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120 M EMGL G KSAR+VG V+G HPHGD S Y++ VRLAQ F RYPLI GQGNFG+ Sbjct: 56 MKEMGLVAGVKPVKSARVVGNVLGMYHPHGDSSAYEAAVRLAQDFTLRYPLIDGQGNFGS 115 Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180 DGD AAA RYTE R++ +A+L+L +D VDF+ Y+ EPV+ P++ P +L NG Sbjct: 116 RDGDGAAAMRYTEMRLSPIADLLLSEIDRGTVDFQSNYDGAFQEPVLLPARLPMMLLNGA 175 Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240 SGIAVGMAT I HN++EI A L ++DNP + ++++ GPDFP GG ++ I+ Sbjct: 176 SGIAVGMATEIVPHNMREIANAVLHIMDNPNCTTADFMQHVPGPDFPGGGQLITQTADIL 235 Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQV------------------QKSRL 282 +Y GRG R+RARW VE + RG W I++ E+P+ V + + Sbjct: 236 STYETGRGSLRLRARWVVEPMARGQWRIIINELPHGVSVETIQDEILAISNPKPKKDKKT 295 Query: 283 IEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLN 342 I++ LI + +++ ++ E +DVR+++ PK + D LM + + + ME P+N Sbjct: 296 IDQDQLLIKQSALSMIDTVKSEGKKDVRLIIEPKTSKVSSDELMAFLLLHTSMEVSCPVN 355 Query: 343 MNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDE 402 M ++ P + ILKEW+A R V+ RR F + I++R+ IL+G +IA+L+IDE Sbjct: 356 MVMIGTDGRPAQKGMIAILKEWIAFRLNVVRRRCQFDLDKINKRIHILEGRMIAFLHIDE 415 Query: 403 IIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKID 462 +I +IRN D+PK +++ F L+E Q + IL +RLR L +LE ++I+ EL +L E + + Sbjct: 416 VIKVIRNSDEPKTDLIAAFQLSEIQAEDILEIRLRQLARLEGFKIEKELKDLREEADGLQ 475 Query: 463 SLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITV 522 ++L S + A EI++ E + RRT V R Q+A + EP+T+ Sbjct: 476 TILGSDTKLRRLTAKEIKQDAEKYGDD-----RRTLIEPVERVQGG--QKAFVVDEPVTI 528 Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582 ++S GWIR+ + H V+ A+ +K GDS + TT I+LL ++G+ Y A + Sbjct: 529 LLSKNGWIRARQGHGVERDAISWKAGDSEFAVIETRTTLPIVLLDSNGRCYAFDASTVPG 588 Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFL 642 G+G G + +I++ + +V A + L +S FI ++A + GK F+ Sbjct: 589 GKGDGIPLSSIIEVQNGAKLVHALSGKDDDRYLFATSNSYGFIAPLKGLVARPKAGKAFM 648 Query: 643 KVSSEEKMKLVVKVTGD---HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKD 694 K E K ++ + D H+ V KLL+F++ ++ E GKGVR+ D Sbjct: 649 K--PEGKATILPPLALDDRTHLVVTSSENKLLVFAVTEMNEYPNGGKGVRIMDIPD 702 >gi|300692059|ref|YP_003753054.1| DNA topoisomerase IV, subunit A [Ralstonia solanacearum PSI07] gi|299079119|emb|CBJ51786.1| DNA topoisomerase IV, subunit A [Ralstonia solanacearum PSI07] Length = 781 Score = 495 bits (1274), Expect = e-137, Method: Compositional matrix adjust. Identities = 273/718 (38%), Positives = 414/718 (57%), Gaps = 38/718 (5%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 E +A++L E YL YA+S +K RA+P++ DG KPV RRI+ AM EMGL A K Sbjct: 12 EPAEALTLAHYAERAYLDYAVSVVKGRALPEVADGQKPVQRRILFAMHEMGLRADAKPVK 71 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 SAR+VG+V+GK HPHGDQS YD+LVRLAQ F RYPLI GQGNFG+ DGD AAA RYTEA Sbjct: 72 SARVVGDVLGKYHPHGDQSAYDALVRLAQDFSLRYPLIDGQGNFGSRDGDGAAAMRYTEA 131 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 R+T ++ L+L+ +D+ VDF Y+ EP + P++ P +L NG SGIAVGMAT IPSH Sbjct: 132 RLTPISRLLLEELDQGTVDFIPNYDGSMDEPKLLPARLPFVLLNGASGIAVGMATEIPSH 191 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 N++E+ AA+ALI + +++ L++Y+ GPDFP GG I+ S I + Y GRG +VRA Sbjct: 192 NLREVAIAAVALIRDDKLTSTDLMQYMPGPDFPGGGQIISSAADIAQIYETGRGSLKVRA 251 Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAK------------------RIP 296 RW +E++ RG W +VVTE+P +++E+I EL K + Sbjct: 252 RWKIEDLARGQWQLVVTELPPNTSSQKVLEEIEELTNPKVRTGKKSLTPDQLQLKQTMLG 311 Query: 297 LLEDIRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQV 354 LL+ +RDES +D VR+V PK++++ ++ + +E+ P+N+ ++ P+ Sbjct: 312 LLDAVRDESGKDAPVRLVFEPKSKNIGQQEFANALLAHTSLESGAPINLVMIGTDGRPRQ 371 Query: 355 MPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK 414 L IL+EW+A+R E + RR+ R+ ++ R+ IL+G + L I+E+I IIR D+PK Sbjct: 372 KGLADILREWIAYRFETVTRRTRHRLGKVEDRIHILEGRQMVLLRIEEVIRIIRESDEPK 431 Query: 415 PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQ 474 P ++ F L+E Q + IL +RLR L +LE +I+ EL +L E+ +D LL S + Sbjct: 432 PALMQAFGLSERQAEDILEIRLRQLARLEAIKIEQELKDLREEQADLDVLLKS------E 485 Query: 475 IACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK 534 R +KEI + + G R T + R A ++ + EP+TV++S +GW+R+ + Sbjct: 486 TVMRRRIIKEIETDAKQYGDDRRTLIQEERRAAAEVK---VVDEPVTVIVSQKGWVRTRQ 542 Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLST-----DGKAYTLPAGNLLSGRGHGEA 589 H D + FK GD L TTD +L+ T G+ Y++ NL GRG G Sbjct: 543 GHGHDATQFGFKAGDVLYDTFECRTTDALLIFGTRDDKGTGRVYSVAVANLPGGRGDGVP 602 Query: 590 IQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649 + LI+L I + +L+ + GN F+ + +++ + GK FL + ++ Sbjct: 603 LTTLIELAPGTHIAHTLAGHAEQNVLISTRGGNGFLAKVGDMVGRQKGGKAFLTLDEGDQ 662 Query: 650 MKLVVKVTGDH--VAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSY-KDGGISDVICF 703 V D VA + N +LL+F + ++ + S G+GV L K+ ++ + F Sbjct: 663 PNKPAAVPEDAYGVACLSANGRLLLFPLSEVKTLASGGRGVILMELEKNETLAQALAF 720 >gi|307245439|ref|ZP_07527527.1| DNA topoisomerase 4 subunit A [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307254393|ref|ZP_07536231.1| DNA topoisomerase 4 subunit A [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307258852|ref|ZP_07540584.1| DNA topoisomerase 4 subunit A [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306853780|gb|EFM85997.1| DNA topoisomerase 4 subunit A [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306862692|gb|EFM94648.1| DNA topoisomerase 4 subunit A [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306867203|gb|EFM99059.1| DNA topoisomerase 4 subunit A [Actinobacillus pleuropneumoniae serovar 11 str. 56153] Length = 748 Score = 495 bits (1274), Expect = e-137, Method: Compositional matrix adjust. Identities = 268/743 (36%), Positives = 447/743 (60%), Gaps = 25/743 (3%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 E V+ + ++ E+ YL Y++ I +RA+P + DG KPV RRII+AMSE+GL+ A +KK Sbjct: 8 EGVEQMPIKRFTEDAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAMSELGLNASAKYKK 67 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTE 133 SAR VG+V+GK HPHGD + Y+++V +AQPF RYPLI GQGN+G D S AA RYTE Sbjct: 68 SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLIDGQGNWGAPDDPKSFAAMRYTE 127 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 ++++++AE++L + + VD++ ++ EP P++ P++L NGT GIAVGMAT IP Sbjct: 128 SKLSKMAEVLLGELGQGTVDYQPNFDGSLEEPKYLPARLPHILLNGTMGIAVGMATDIPP 187 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E+ EA++ L++NP+ S+ +L+ + GPD+PT I+ + I + Y G+G ++R Sbjct: 188 HNINELAEASVMLLENPKASLAELMTVVQGPDYPTEAEIITPKADIAKMYEQGKGSIKMR 247 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRI 311 A W E+ IV+ +P+Q S++IE+IA + K++P+++DIRDES + +RI Sbjct: 248 AVWKKED-----GEIVILALPHQASPSKIIEQIATQMRNKKLPMVDDIRDESDHENPIRI 302 Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371 V+ P++ +D + LM+ +F +D+E + +NMN++ + P V L IL EWL RR Sbjct: 303 VIVPRSNRIDFEALMDHLFATTDLEKSYRVNMNMIGLDGKPAVKNLQTILTEWLTFRRTT 362 Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431 + RR ++R+ I R+ IL+GL+IA+LNIDE+I IIRNED+PK +++RF+L+E Q +AI Sbjct: 363 VTRRLNYRLDKILNRLHILEGLMIAFLNIDEVIEIIRNEDEPKTALMARFNLSEAQSEAI 422 Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491 LNLRLR L KLEE++++ E L E++++ L S ++ I EI+ + F+ Sbjct: 423 LNLRLRHLAKLEEHELQEEKSQLEKERDELQLTLGSERRLNTLIKKEIQADAKAFASP-- 480 Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551 RR+ E + A KA + + E +TV++S +GW+R K H +D+ L ++ GD Sbjct: 481 ---RRSPLVERAEA-KAISESDLTPTEDVTVILSEKGWVRCAKGHDIDVQGLSYRAGDGY 536 Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611 H + ++ L + G+AY L +L S R GE + I L + + +S Sbjct: 537 LAHAHGRSNQPVVFLDSTGRAYALDPTSLPSARSQGEPLTGKITLPDGATVQQVLMANSD 596 Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVAVVGENR 668 K+L+ S G FI ++++ + GK + ++ K+ +L+ + + Sbjct: 597 TKVLMASDSGYGFICSFEDLVSRNKAGKAVISLTENAKVLPPQLIDNEAELSLVAMSSVG 656 Query: 669 KLLIFSIDQIPEMSRGKGVRL-----QSYKDGG--ISDVICFKICEGLTWIDSAGRSYNR 721 ++L+F I ++P++S+GKG ++ Q+ K+G ++ ++ K + L ++ S R Sbjct: 657 RMLVFPITELPQLSKGKGNKIINISAQAAKEGNELLARLLLVKPTQSLVFV-SGKRKITL 715 Query: 722 SENDLLGWLGKRGGVGSLVPKGF 744 +D+ + G+R GS + +G Sbjct: 716 KPSDIDNYRGERARKGSQLVRGL 738 >gi|163856284|ref|YP_001630582.1| DNA topoisomerase IV subunit A [Bordetella petrii DSM 12804] gi|163260012|emb|CAP42313.1| topoisomerase IV subunit A [Bordetella petrii] Length = 771 Score = 494 bits (1273), Expect = e-137, Method: Compositional matrix adjust. Identities = 260/684 (38%), Positives = 400/684 (58%), Gaps = 32/684 (4%) Query: 23 RFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEV 82 R+A E+ YL YA+S ++ RA+PD+ DG KPV RRI++AM +MGL GA KSAR+VG+V Sbjct: 25 RYA-EQAYLDYAVSVVRGRALPDVGDGQKPVQRRILYAMQDMGLGPGAKPVKSARVVGDV 83 Query: 83 IGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAEL 142 +GK HPHGDQ+ YD++VR+AQ F RYPLI G GNFG+ DGD+AAA RYTEAR+T + L Sbjct: 84 LGKYHPHGDQAAYDAMVRMAQDFSLRYPLIDGHGNFGSRDGDNAAAMRYTEARLTPFSRL 143 Query: 143 ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEA 202 +L +DE VDF Y+ EP + P++ P +L NG SGIAVGMAT IPSHN++E+ +A Sbjct: 144 LLDELDEGTVDFAPNYDGSQQEPQMLPARLPVMLLNGASGIAVGMATEIPSHNLREVAQA 203 Query: 203 ALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVG 262 +ALI P +S E+L + GPDF GG I+ I + Y GRG + RARW EE+ Sbjct: 204 CVALIKQPRLSDEELHAMVPGPDFAGGGQIITPAADIAQIYAGGRGSLKARARWRFEEMA 263 Query: 263 RGSWCIVVTEIPYQVQKSRLIEKIAELIIAK------------------RIPLLEDIRDE 304 RG W +VV E+P +++E+I E+ K + LL+ +RDE Sbjct: 264 RGQWQLVVHELPPGTSCQKVLEEIEEITNPKVKTGKKSLTTDQQQAKAVMLNLLDAVRDE 323 Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362 S +D VR+V PK +D D + ++ + ME+ P+N+ + P+ L IL Sbjct: 324 SGKDAAVRLVFEPKTSRVDRDEFVNTLLAQTSMESSVPVNLVCIGTDGRPRQKGLRDILT 383 Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422 EWLA R + + RR+ R+ + R+ +L+G ++ YLN+DE+I IR D+PK ++ RF Sbjct: 384 EWLAFRTDTVVRRTRHRLDKVIDRIHVLEGRMVVYLNVDEVIQTIRESDEPKAALMQRFQ 443 Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482 L+E Q + IL +RLR L +LE +I+ EL + E+ ++ LL+ N + + V Sbjct: 444 LSERQAEDILEMRLRQLARLEGIKIEQELADKREEQSRLQELLD------NPASLKRLLV 497 Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542 KEI + + G R T E A++A L+ +++ EP+TV++S +GW+R+ + H D + Sbjct: 498 KEIEADAKQYGDERRTLIET--AERAVLETKVVD-EPVTVIVSQKGWLRARQGHGHDAAQ 554 Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602 FK+GD L A TTD ++ + +G+ Y++ L S RG G+ + +IDL I Sbjct: 555 FGFKQGDDLYGAFECRTTDTLIAVGDNGRVYSVAVAGLPSARGDGQPVTTMIDLAPGTRI 614 Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV--TGDH 660 V + + L+ + +G F ++++ R GK F+ + + + + V + Sbjct: 615 VHSIAASPDSRWLLATQRGFGFAARLGDMVSRQRGGKQFITLEAGDALLRPVPLFDGARQ 674 Query: 661 VAVVGENRKLLIFSIDQIPEMSRG 684 +A++ K L+F +D++ +S G Sbjct: 675 LALLSAKGKFLVFGLDEVKSLSAG 698 >gi|330963726|gb|EGH63986.1| DNA topoisomerase IV subunit A [Pseudomonas syringae pv. actinidiae str. M302091] Length = 751 Score = 494 bits (1273), Expect = e-137, Method: Compositional matrix adjust. Identities = 271/761 (35%), Positives = 447/761 (58%), Gaps = 29/761 (3%) Query: 6 ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65 +S+S L + V+ SL E+ YL Y++ I +RA+P + DG KPV RRII+AMSE+G Sbjct: 1 MSDSLDLSLDGVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELG 60 Query: 66 LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124 L A KKSAR VG+V+GK HPHGD + Y+++V +AQPF RY L+ GQGN+G D Sbjct: 61 LGADAKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPDDPK 120 Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184 S AA RYTEAR+++ +E++L + + D+ ++ EP V P++ PN+L NGT+GIA Sbjct: 121 SFAAMRYTEARLSRYSEVLLSELGQGTADWVPNFDGTLDEPAVLPARLPNILLNGTTGIA 180 Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244 VGMAT +P HN++E+ A + L+D P+ +I +L E+I+GPD+PT I+ R +++ Y Sbjct: 181 VGMATDVPPHNLREVARACVHLLDEPKATIPELCEHILGPDYPTEAEIITPRADLLKIYE 240 Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304 GRG R+RA + +E+ I+VT +P+QV ++++E+IA + AK++P++ D+RDE Sbjct: 241 TGRGSVRMRAVYRIED-----GDIIVTSLPHQVSGAKVLEQIAAQMQAKKLPMVADLRDE 295 Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362 S + RIV+ P++ ++ D LM+ +F +++E+ + +N+N++ + PQ+ L +L Sbjct: 296 SDHENPCRIVIIPRSNRVELDELMQHLFATTELESSYRVNINIIGLDGKPQLKNLKTLLS 355 Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422 EWL R + RR FR+ ++ R+ +L GLL AYLN+DE+I IIR + PK +++RF Sbjct: 356 EWLTFRIGTVRRRLQFRLDKVEHRLHLLDGLLTAYLNLDEVIHIIRTAEHPKAELIARFG 415 Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482 L+E Q D IL+ RLR L +LEE +++SE D L E+ K+ +LL S + + E+ Sbjct: 416 LSEIQADYILDTRLRQLARLEEMKLRSEQDALRKEQAKLQALLGSESKLRKLVRAELIAD 475 Query: 483 KEIFSKSTDLGRRRTTFCEVSRAD-KATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS 541 E + RR+ V+RA+ KA + ++ EP+TVV+S +GW+R K H +D + Sbjct: 476 AETYGDD-----RRSPI--VARAEAKALSENELMPTEPVTVVLSEKGWVRCAKGHDIDAT 528 Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD 601 L +K GD K + + + + + G++Y++ A L S RG GE + + Sbjct: 529 GLSYKAGDGFKTSAIGRSNQFAVFIDSTGRSYSVAAHTLPSARGQGEPLTGKLQPPPGAT 588 Query: 602 IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL---VVKVTG 658 + + ++ S G F+V+ ++ A + GK L + K+ L V Sbjct: 589 FECVLLPEDDALYVIASDAGYGFVVKGEDLQAKNKAGKALLSLPGGAKVILPRPVADREQ 648 Query: 659 DHVAVVGENRKLLIFSIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTW 711 + +A V +LL+F + +P++ +GKG ++ + ++ ++D+ I +G T Sbjct: 649 NWLAAVTTEGRLLVFKVSDLPQLGKGKGNKIIGIPGERVASREEYVTDLAV--ITQGATL 706 Query: 712 IDSAG-RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751 + AG R+ + DL + G+RG G+ +P+GF R L Sbjct: 707 VLQAGKRTLSLRPEDLEHYKGERGRRGNKLPRGFQRVDALL 747 >gi|114564486|ref|YP_752000.1| DNA topoisomerase IV subunit A [Shewanella frigidimarina NCIMB 400] gi|114335779|gb|ABI73161.1| DNA topoisomerase IV subunit A [Shewanella frigidimarina NCIMB 400] Length = 767 Score = 494 bits (1273), Expect = e-137, Method: Compositional matrix adjust. Identities = 269/754 (35%), Positives = 440/754 (58%), Gaps = 25/754 (3%) Query: 6 ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65 +S++ L + V+ + LR E YL Y++ I +RA+P + DG KPV RRII+AMSE+G Sbjct: 1 MSDAIELSLDGVEQMPLRRFTEGAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELG 60 Query: 66 LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124 L + KKSAR VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D Sbjct: 61 LSAQSKHKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPK 120 Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184 S AA RYTEAR+++ +E++L + + VD+ ++ EPV P++ P++L NG +GIA Sbjct: 121 SFAAMRYTEARLSKFSEVLLSELGQGTVDWSPNFDGTMKEPVTLPARLPHILLNGITGIA 180 Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244 VGMAT IP HNV E+ A + LIDNP+ + +L+E++ GPD+PT I+ R I Y Sbjct: 181 VGMATDIPPHNVHELVGACIELIDNPKADLARLMEFVPGPDYPTEAEIITPRADIERIYD 240 Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304 G+G R RA + EE G IV+T +P+Q +++E+IA + AK++P++ D+RDE Sbjct: 241 TGKGSIRARAVYS-EEQGE----IVITSLPHQASSGKILEQIANQMQAKKLPMVSDLRDE 295 Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362 S + VR+V+ P++ +D D LM +F +D+E F +N+NVL + P+V L +L Sbjct: 296 SDHENPVRLVIVPRSNRIDCDQLMTHLFATTDLEKSFRVNLNVLGLDGRPKVKGLKQLLT 355 Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422 EWL R + RR +R+ + R+ IL+ L++A+LNIDE+I IIR D+PK +++RF+ Sbjct: 356 EWLEFRLTTVTRRLQYRLDKVLARLHILEALMVAFLNIDEVIEIIRYNDEPKAELMARFN 415 Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482 L++ Q ++IL L+LR L KLEE++IK E D L AE++K++ LL+S ++ + E+ + Sbjct: 416 LSDKQAESILELKLRHLAKLEEFKIKGEQDELAAERDKLELLLSSERRLKTLVKKELIQD 475 Query: 483 KEIFSKSTDLGRRRTTFCEVSRAD-KATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS 541 E + + RR+ E R D KA +Q + E +TVV+S++GW+R K H VD+ Sbjct: 476 GETYGDN-----RRSPIIE--RVDAKALTEQELTPTESVTVVLSDKGWVRCAKGHDVDVE 528 Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD 601 L +K GDS ++ + + + + G+A+ + L S R GE I ++ Sbjct: 529 GLSYKSGDSYLCSVMGKSNQAAVFIDSTGRAFATDSHTLPSARSQGEPITTRFNMAPGAT 588 Query: 602 IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE---KMKLVVKVTG 658 + + + L+ + G FI ++++ + GK L + + + KL+ K Sbjct: 589 MQHVLMGEDEQFFLLATDAGYGFICAYPDLVSRNKAGKALLSLPTNALAMQPKLINKTAD 648 Query: 659 DHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISD----VICFKICEGLTWID- 713 + + ++L+FS+D +P++S+GKG ++ + ++ + T + Sbjct: 649 QSLLAITSEGRMLMFSLDALPQLSKGKGNKIIGIPTDRAKNREELLLHLNVVPHNTAVTL 708 Query: 714 -SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746 + R +DL + G+RG G+ +P+G R Sbjct: 709 WAGKRKLTLKPSDLEHYRGERGRRGAKLPRGLQR 742 >gi|270158444|ref|ZP_06187101.1| DNA topoisomerase IV subunit A [Legionella longbeachae D-4968] gi|289166718|ref|YP_003456856.1| DNA topoisomerase IV, A subunit [Legionella longbeachae NSW150] gi|269990469|gb|EEZ96723.1| DNA topoisomerase IV subunit A [Legionella longbeachae D-4968] gi|288859891|emb|CBJ13877.1| DNA topoisomerase IV, A subunit [Legionella longbeachae NSW150] Length = 753 Score = 494 bits (1273), Expect = e-137, Method: Compositional matrix adjust. Identities = 274/751 (36%), Positives = 443/751 (58%), Gaps = 28/751 (3%) Query: 8 NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67 N+ T+ E + + + F E+ YL Y++ I +RA+P + DG KPV RRI++AMSE+GL Sbjct: 2 NAKTMNEVSERKLLAEFT-EKAYLDYSMYVILDRALPHIADGLKPVQRRIVYAMSELGLK 60 Query: 68 FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSA 126 A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF RYP + GQGN+G+ D S Sbjct: 61 ATAKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPFVDGQGNWGSPDDPKSF 120 Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186 AA RYTEAR+++ AE++L + + VD+ D ++ EP + P++ PN+L NG +GIAVG Sbjct: 121 AAMRYTEARLSRYAEVLLAELLQGTVDWVDNFDGTLQEPALLPARLPNILLNGATGIAVG 180 Query: 187 MATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLG 246 MA+ I HN+ E+ A + L+DNP + + +YI GPDFPT I+ E+I Y G Sbjct: 181 MASDILPHNLTEVANACVYLLDNPHADLAAITQYIKGPDFPTEAEIITPPEAISAMYETG 240 Query: 247 RGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA 306 G ++RA + E+ IV+T +PYQV ++++E+IA + K++P++ED+RDES Sbjct: 241 NGSIKMRAVYNQEKQN-----IVITALPYQVSGAKVLEQIALQMQQKKLPMVEDLRDESD 295 Query: 307 ED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364 + R+V+ P++ +D + LM +F +D+E + +N N++ + P+V L I+ EW Sbjct: 296 HEHPTRLVIVPRSNRVDIEGLMSHLFATTDLERSYRVNFNMIGLDGKPRVKGLVEIISEW 355 Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLT 424 L +R V+ RR +R+ + R+ +L+GLLIAYLNIDE+IAIIR ++PK +++RF+++ Sbjct: 356 LVYRISVVRRRLEYRLAKVLDRIHVLEGLLIAYLNIDEVIAIIREHEQPKQGLIARFNIS 415 Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484 + Q +AIL ++LR L KLEE +++ ELD L E++ + ++L S +Q+ ++ E E Sbjct: 416 DRQAEAILEMKLRHLAKLEEIKLRGELDELCMERDNLQAILAS-EQRLKKLVKE-----E 469 Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH 544 I + + G R + V + +A ++ ++ EPITVV+S +GW+R+ K H ++ L Sbjct: 470 ITNDRDEFGDVRRSPIIVRQESQALKEEDILPNEPITVVLSKKGWVRAAKGHDINGCELS 529 Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVT 604 FK GD K A + +IL ++GK Y+LP L S RG GE + ++ Sbjct: 530 FKAGDDFKAQATARSNQQILFFDSEGKVYSLPGHVLPSARGQGEPLTGKLNPAEGALFEA 589 Query: 605 AFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH---- 660 A ++ +L+ S G FI + ++ R GK +K+ E L ++ H Sbjct: 590 AVGGEADQSVLLASDAGYGFIAKIGDLYVKNRNGKACIKL-PETSHILPPRILPKHDELF 648 Query: 661 VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSY-------KDGGISDVICFKICEGLTWID 713 +A +LLI S +IPE+SRGKG +L S ++ + D+ + LT + Sbjct: 649 IACATNAGRLLICSTKEIPELSRGKGNKLISIPTAKVVSREEYVIDIQVLTADDTLT-VH 707 Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGF 744 + R + DL + G+RG G+ +P+G Sbjct: 708 AGKRHFTLKGADLEHYKGERGRRGNRLPRGL 738 >gi|301156479|emb|CBW15950.1| DNA topoisomerase IV, subunit A [Haemophilus parainfluenzae T3T1] Length = 740 Score = 494 bits (1273), Expect = e-137, Method: Compositional matrix adjust. Identities = 277/737 (37%), Positives = 432/737 (58%), Gaps = 24/737 (3%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 + LR E+ YL Y++ I +RA+P + DG KPV RRI++AMSE+GL+ A FKKSAR V Sbjct: 1 MPLRTFTEKAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNAAAKFKKSARTV 60 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQ 138 G+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S AA RYTE+R+++ Sbjct: 61 GDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSK 120 Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198 ++E++L + + VDF+ ++ EP P++ P++L NGT+GIAVGMAT IP HN+ E Sbjct: 121 ISEILLSELGQGTVDFQPNFDGTLEEPQYLPARLPHILLNGTTGIAVGMATDIPPHNINE 180 Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258 + +AA+ L+DNP+ ++ +L I GPDFPT I+ ++ I + Y GRG ++RA W Sbjct: 181 VADAAVMLLDNPKAGLDDVLNIIQGPDFPTEAEIISPKDDIRKMYETGRGSIKMRATWHK 240 Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFPK 316 E+ I+++ +P+Q S++I +IAE + AK++P++EDIRDE+ + VRIVL P+ Sbjct: 241 ED-----GEIIISALPHQSSPSKIIAQIAEQMTAKKLPMVEDIRDEADYENPVRIVLVPR 295 Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376 + +D D LM +F +D+E + +NMN++ + P V L +L EWL RR + RR Sbjct: 296 SNRVDTDALMAHLFATTDLEKSYRVNMNMIGLDHKPAVKGLLQVLIEWLTFRRTTVTRRL 355 Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRL 436 R+ + R+ IL GL+IA+LNIDE+I IIR ED+PK V+++RF+L++ Q +AILNLRL Sbjct: 356 QHRLDKVLARLHILDGLMIAFLNIDEVIEIIRTEDEPKQVLMARFNLSDEQAEAILNLRL 415 Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496 R L KLEE+Q+++E D L E+ ++ +L S ++ I EI+E + ++ R Sbjct: 416 RHLAKLEEHQLQAEKDKLEEERSNLELILGSERRLNTLIKKEIQEDAKKYASP-----RM 470 Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALH 556 + E A KA + M EP+TV++S GW+R K H +D L +K GD Sbjct: 471 SQLVEREEA-KAISESEMTPAEPVTVILSEMGWVRCAKGHDIDPEGLSYKAGDKYLAHAC 529 Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLV 616 + ++ + + G++Y L +L S R GE + + L I + +LL+ Sbjct: 530 GKSNQPVIFIDSTGRSYALDPLSLPSARSQGEPLTGKLTLPAGATIEQVIMEPEKQELLM 589 Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVAVVGENRKLLIF 673 S G FI + ++IA + GK + + K+ + + + T V++ R +LIF Sbjct: 590 ASDAGYGFICKFEDLIARNKAGKALISLPENAKVLKPETLSESTSLLVSLTSAGR-MLIF 648 Query: 674 SIDQIPEMSRGKGVRLQSYKDGGISD-----VICFKICEGLTW-IDSAGRSYNRSENDLL 727 + +P +S+GKG ++ S V F I E + S R DL Sbjct: 649 PVRDLPALSKGKGNKIISIPAANAKARSELLVKLFLISEQASLEFHSGKRKITLKPEDLQ 708 Query: 728 GWLGKRGGVGSLVPKGF 744 + +RG GS +P+G Sbjct: 709 KFRAERGRKGSQLPRGL 725 >gi|46143722|ref|ZP_00134570.2| COG0188: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126208060|ref|YP_001053285.1| DNA topoisomerase IV subunit A [Actinobacillus pleuropneumoniae L20] gi|126096852|gb|ABN73680.1| DNA topoisomerase 4 subunit A [Actinobacillus pleuropneumoniae serovar 5b str. L20] Length = 748 Score = 494 bits (1272), Expect = e-137, Method: Compositional matrix adjust. Identities = 267/743 (35%), Positives = 448/743 (60%), Gaps = 25/743 (3%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 E V+ + ++ E+ YL Y++ I +RA+P + DG KPV RRII+AMSE+GL+ A +KK Sbjct: 8 EGVEQMPIKRFTEDAYLNYSMYVIMDRALPFIGDGLKPVQRRIIYAMSELGLNASAKYKK 67 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTE 133 SAR VG+V+GK HPHGD + Y+++V +AQPF RYPLI GQGN+G D S AA RYTE Sbjct: 68 SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLIDGQGNWGAPDDPKSFAAMRYTE 127 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 ++++++AE++L + + VD++ ++ EP P++ P++L NGT GIAVGMAT IP Sbjct: 128 SKLSKMAEVLLGELGQGTVDYQPNFDGSLEEPKYLPARLPHILLNGTMGIAVGMATDIPP 187 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E+ EA++ L++NP+ S+ +L+ + GPD+PT I+ + I + Y G+G ++R Sbjct: 188 HNINELAEASVMLLENPKASLAELMTVVQGPDYPTEAEIITPKADIAKMYEQGKGSIKMR 247 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRI 311 A W E+ IV++ +P+Q S++IE+IA + K++P+++DIRDES + +RI Sbjct: 248 AVWKKED-----GEIVISALPHQASPSKVIEQIATQMRNKKLPMVDDIRDESDHENPIRI 302 Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371 V+ P++ +D + LM+ +F +D+E + +NMN++ + P V L IL EWL RR Sbjct: 303 VIVPRSNRIDFEALMDHLFATTDLEKSYRVNMNMIGLDGKPAVKNLQTILTEWLTFRRTT 362 Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431 + RR ++R+ I R+ IL GL+IA+LNIDE+I IIRNED+PK +++RF+L+E Q +AI Sbjct: 363 VTRRLNYRLDKILNRLHILDGLMIAFLNIDEVIEIIRNEDEPKTALMARFNLSEAQAEAI 422 Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491 LNLRLR L KLEE+++++E L E++++ L S ++ I EI+ + F+ Sbjct: 423 LNLRLRHLAKLEEHELQAEKSQLEKERDELQLTLGSERRLNTLIKKEIQADAKAFASP-- 480 Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551 RR+ E + A KA + + E +TV++S +GW+R K H +D+ L ++ GD Sbjct: 481 ---RRSPLVERAEA-KAISESDLTPTEDVTVILSEKGWVRCAKGHDIDVQGLSYRAGDGY 536 Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611 + + ++ L + G+AY L +L S R GE + I L + + +S Sbjct: 537 LAHAYGRSNQPVVFLDSTGRAYALDPTSLPSARSQGEPLTGKITLPEGATVQQVLMANSD 596 Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVAVVGENR 668 K+L+ S G FI ++++ + GK + ++ K+ +L+ + + Sbjct: 597 TKVLMASDSGYGFICSFEDLVSRNKAGKAVISLTENAKVLPPQLIDNEAELSLVAMSSVG 656 Query: 669 KLLIFSIDQIPEMSRGKGVRL-----QSYKDGG--ISDVICFKICEGLTWIDSAGRSYNR 721 ++L+F I ++P++S+GKG ++ Q+ K+G ++ ++ K + L ++ S R Sbjct: 657 RMLVFPITELPQLSKGKGNKIINISAQAAKEGNELLARLLLVKPTQSLVFV-SGKRKITL 715 Query: 722 SENDLLGWLGKRGGVGSLVPKGF 744 +D+ + G+R GS + +G Sbjct: 716 KPSDIDNYRGERARKGSQLVRGL 738 >gi|308050987|ref|YP_003914553.1| DNA topoisomerase IV subunit A [Ferrimonas balearica DSM 9799] gi|307633177|gb|ADN77479.1| DNA topoisomerase IV subunit A [Ferrimonas balearica DSM 9799] Length = 754 Score = 494 bits (1272), Expect = e-137, Method: Compositional matrix adjust. Identities = 271/758 (35%), Positives = 441/758 (58%), Gaps = 27/758 (3%) Query: 6 ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65 +++ N + E V+ LR E+ YL YA+ I +RA+P + DG KPV RRII+AMSE+G Sbjct: 1 MTDHNAMSLEGVEQQPLRQFTEQAYLNYAMYVIMDRALPHIGDGLKPVQRRIIYAMSELG 60 Query: 66 LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124 L A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D Sbjct: 61 LSATAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFTYRYPLVDGQGNWGAPDDPK 120 Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184 S AA RYTE+R+++ +E++L + + V++ ++ EP + PS+ P++L NG +GIA Sbjct: 121 SFAAMRYTESRLSRFSEVLLSELGQGTVEWGPNFDGTLKEPKLLPSRLPHILLNGVTGIA 180 Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244 VGMAT IP HN +E+ A L++NP+ +E+L+ ++ GPD+PT I+ R I + Y+ Sbjct: 181 VGMATDIPPHNAREVAAACAHLLENPKAELEELMGFVQGPDYPTAAEIITPRTEIAKIYQ 240 Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304 GRG ++RA V +V G IV+T +P+QV S+LIE+IA + AK++P++ D+RDE Sbjct: 241 TGRGSVKMRA---VYQVIDGE--IVITALPHQVSGSKLIEQIASQMQAKKLPMVTDLRDE 295 Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362 S + VR+V+ P++ +D D +M +F +D+E + +N+N+L + P V L IL Sbjct: 296 SDHENPVRLVIVPRSNRIDLDQVMAHLFATTDLEKSYRVNLNMLGLDNRPGVRDLKSILS 355 Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422 EWL R + + RR +R+ + R+ IL GLLIA+LNIDE+I IIR+ED+PK ++SRF Sbjct: 356 EWLVFRTDTVRRRLQYRLDKVLARLHILDGLLIAFLNIDEVIEIIRSEDEPKAALMSRFG 415 Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482 L+E Q +AIL ++LR L KLEE +I++E + L AE++K+ ++L S ++ + E+ Sbjct: 416 LSEKQAEAILEIKLRQLAKLEEIKIRAEQEELAAERDKLQTILGSERRLKTLVKKELLAD 475 Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542 E + RR+ E A +A +Q + EP+TVV+S + W R K H V+ + Sbjct: 476 AETYGDD-----RRSPLVERGEA-RALTEQELTPAEPVTVVMSQKAWGRCAKGHDVEPES 529 Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602 L ++ GD + ++ L + G+AYT +L S R GE + +L + Sbjct: 530 LSYRAGDGYLAHARGRSNQPVVFLESSGRAYTTEPHSLPSARSQGEPLSGRFNLVAGARL 589 Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGD 659 + L+ + G F+ + E+++ + GK L V + ++ + + D Sbjct: 590 EHVVMGQDDDHYLMATDAGYGFVGQFKEMVSRNKAGKALLTVPTGAEILPPQRIRDQAND 649 Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKG--------VRLQSYKDGGISDVICFKICEGLTW 711 + + ++L+F + Q+P +++GKG R +S ++ V+ + + W Sbjct: 650 RLLAISTEGRMLLFPLSQLPVLAKGKGNKIIGIPSERAKSREEYVKHLVVLPQGAQITLW 709 Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGK 749 + R +DL +LG+RG G+ +P+G R K Sbjct: 710 --AGKRKLTLKSSDLEHYLGERGRRGNKLPRGLQRVDK 745 >gi|289649098|ref|ZP_06480441.1| DNA topoisomerase IV subunit A [Pseudomonas syringae pv. aesculi str. 2250] Length = 751 Score = 494 bits (1272), Expect = e-137, Method: Compositional matrix adjust. Identities = 273/761 (35%), Positives = 449/761 (59%), Gaps = 29/761 (3%) Query: 6 ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65 +S+S L + V+ SL E+ YL Y++ I +RA+P + DG KPV RRII+AMSE+G Sbjct: 1 MSDSLDLSLDGVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELG 60 Query: 66 LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124 L A KKSAR VG+V+GK HPHGD + Y+++V +AQPF RY L+ GQGN+G D Sbjct: 61 LGADAKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPDDPK 120 Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184 S AA RYTEAR+++ +E++L + + D+ ++ EP V P++ PN+L NGT+GIA Sbjct: 121 SFAAMRYTEARLSRYSEVLLSELGQGTADWVPNFDGTLDEPAVLPARLPNILLNGTTGIA 180 Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244 VGMAT +PSHN++E+ A + L+D+P+ ++ +L E+I+GPD+PT I+ R +++ Y Sbjct: 181 VGMATDVPSHNLREVASACVHLLDDPKATVPELCEHILGPDYPTEAEIITPRADLLKIYE 240 Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304 GRG R+RA + +E+ IVVT +P+QV ++++E+IA + AK++P++ D+RDE Sbjct: 241 TGRGSVRMRAVYRIED-----GDIVVTSLPHQVSGAKVLEQIAAQMQAKKLPMVADLRDE 295 Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362 S + RIV+ P++ ++ D LM+ +F +++E+ + +N+N++ + PQ+ L +L Sbjct: 296 SDHENPCRIVIIPRSNRVELDELMQHLFATTELESSYRVNINIIGLDGKPQLKNLKTLLG 355 Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422 EWL R + RR FR+ ++ R+ +L GLL AYLN+DE+I IIR + PK +++RF Sbjct: 356 EWLTFRIGTVRRRLQFRLDKVEHRLHLLDGLLTAYLNLDEVIHIIRTAEHPKAELIARFG 415 Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482 L+E Q D IL+ RLR L +LEE +++SE D L E+ K+ +LL S + + E+ Sbjct: 416 LSEIQADYILDTRLRQLARLEEMKLRSEQDALRKEQAKLLALLGSESKLRKLVRAELIAD 475 Query: 483 KEIFSKSTDLGRRRTTFCEVSRAD-KATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS 541 E + RR+ V+RA+ KA + ++ EP+TVV+S +GW+R K H +D Sbjct: 476 AETYGDD-----RRSPI--VARAEAKALSENELMPTEPVTVVLSEKGWVRCAKGHDIDAI 528 Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD 601 L +K GD K + + + + + G++Y++ A L S RG GE + + Sbjct: 529 GLSYKAGDGFKTSSIGRSNQFAVFIDSTGRSYSVAAHTLPSARGQGEPLTGKLQPPPGAT 588 Query: 602 IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--- 658 + + ++ S G F+V+ ++ A + GK L + + K+ L V Sbjct: 589 FECVLMPEDDALYVIASDAGYGFVVKGEDLQAKNKAGKALLSLPNGAKVILPRPVPDREQ 648 Query: 659 DHVAVVGENRKLLIFSIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTW 711 + +A V +LL+F I +P++ +GKG ++ + ++ ++D+ I +G T Sbjct: 649 NWLAAVTTEGRLLVFKISDLPQLGKGKGNKIIGIPGERVASREEYVTDLAV--IAQGATL 706 Query: 712 IDSAG-RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751 + AG R+ + DL + G+RG G+ +P+GF R L Sbjct: 707 VLQAGKRTLSLKPEDLEHYKGERGRRGNKLPRGFQRVDALL 747 >gi|330899874|gb|EGH31293.1| DNA topoisomerase IV subunit A [Pseudomonas syringae pv. japonica str. M301072PT] gi|330979119|gb|EGH78028.1| DNA topoisomerase IV subunit A [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 751 Score = 494 bits (1272), Expect = e-137, Method: Compositional matrix adjust. Identities = 271/761 (35%), Positives = 449/761 (59%), Gaps = 29/761 (3%) Query: 6 ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65 +S+S L + V+ SL E+ YL Y++ I +RA+P + DG KPV RRII+AMSE+G Sbjct: 1 MSDSLDLSLDGVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELG 60 Query: 66 LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124 L A KKSAR VG+V+GK HPHGD + Y+++V +AQPF RY L+ GQGN+G D Sbjct: 61 LGADAKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPDDPK 120 Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184 S AA RYTEAR+++ +E++L + + D+ ++ EP V P++ PN+L NGT+GIA Sbjct: 121 SFAAMRYTEARLSRYSEVLLSELGQGTADWVPNFDGTLDEPAVLPARLPNILLNGTTGIA 180 Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244 VGMAT +P HN++E+ A + L+D+P+ ++ +L E+I+GPD+PT I+ R +++ Y Sbjct: 181 VGMATDVPPHNLREVASACVRLLDDPKATVAELCEHILGPDYPTEAEIITPRADLLKIYE 240 Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304 GRG R+RA + +E+ I+VT +P+QV ++++E+IA + AK++P++ D+RDE Sbjct: 241 TGRGSVRMRAVYRIED-----GDIIVTSLPHQVSGAKVLEQIAAQMQAKKLPMVADLRDE 295 Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362 S + RIV+ P++ ++ D LM+ +F +++E+ + +N+N++ + PQ+ L +L Sbjct: 296 SDHENPCRIVIIPRSNRVELDELMQHLFATTELESSYRVNINIIGLDGKPQLKNLKTLLG 355 Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422 EWL R + RR FR+ ++ R+ +L GLL AYLN+DE+I IIR + PK +++RF Sbjct: 356 EWLTFRIGTVRRRLQFRLDKVEHRLHLLDGLLTAYLNLDEVIHIIRTAEHPKAELIARFD 415 Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482 L+E Q D IL+ RLR L +LEE +++SE D L E+ K+ +LL S + + E+ Sbjct: 416 LSEIQADYILDTRLRQLARLEEMKLRSEQDALRKEQAKLQALLGSESKLRKLVRAELIAD 475 Query: 483 KEIFSKSTDLGRRRTTFCEVSRAD-KATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS 541 E + RR+ V+RA+ KA + ++ EP+TVV+S +GW+R K H +D + Sbjct: 476 AETYGDD-----RRSPI--VARAEAKALSENELMPTEPVTVVLSEKGWVRCAKGHDIDAT 528 Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD 601 L +K GD K + + + + + G++Y++ A L S RG GE + + Sbjct: 529 GLSYKAGDGFKTSSIGRSNQFAVFIDSTGRSYSVAAHTLPSARGQGEPLTGKLQPPPGAT 588 Query: 602 IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--- 658 + + ++ S G F+V+ ++ A + GK L + + K+ L V Sbjct: 589 FECVLLPEDDALYVIASDAGYGFVVKGEDLQAKNKAGKALLSLPAGAKVILPRPVPDREQ 648 Query: 659 DHVAVVGENRKLLIFSIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTW 711 + +A V +LL+F I +P++ +GKG ++ + ++ ++D+ I +G T Sbjct: 649 NWLAAVTTEGRLLVFKISDLPQLGKGKGNKIIGIPGERVASREEYVTDLAV--IGQGATL 706 Query: 712 IDSAG-RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751 + AG R+ + DL + G+RG G+ +P+GF R L Sbjct: 707 VLQAGKRTLSLKPEDLEHYKGERGRRGNKLPRGFQRVDALL 747 >gi|73542042|ref|YP_296562.1| DNA topoisomerase IV subunit A [Ralstonia eutropha JMP134] gi|72119455|gb|AAZ61718.1| DNA topoisomerase IV subunit A [Ralstonia eutropha JMP134] Length = 780 Score = 494 bits (1272), Expect = e-137, Method: Compositional matrix adjust. Identities = 270/699 (38%), Positives = 412/699 (58%), Gaps = 28/699 (4%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 EE +++L E YL YA+S +K RA+P++ DG KPV RRI+ AM EMGL A Sbjct: 11 EEPADSLTLARYAERAYLDYAVSVVKGRALPEVADGQKPVQRRILFAMHEMGLRADAKPV 70 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSAR+VG+V+GK HPHGDQS YD+LVRLAQ F RYPLI GQGNFG+ DGD AAA RYTE Sbjct: 71 KSARVVGDVLGKYHPHGDQSAYDALVRLAQDFSLRYPLIDGQGNFGSRDGDGAAAMRYTE 130 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 AR+T ++ L+L +D+ VDF Y+ EP + P++ P +L NG SGIAVGMAT +P Sbjct: 131 ARLTPISRLLLDEIDQGTVDFIANYDGSMEEPKLLPARMPFVLLNGASGIAVGMATEVPP 190 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN++E+ A +A+I NP I++ +LL + GPD+P GG I+ I + Y GRG +VR Sbjct: 191 HNLREVAGATVAMIRNPNITLAELLALMPGPDYPGGGQIISPAADIAQIYESGRGSLKVR 250 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAEL------------------IIAKRI 295 ARW +EE+ RG W +VVTE+P +++E+I EL + A + Sbjct: 251 ARWTIEEMARGQWQLVVTELPPATSAQKVLEEIEELTNPKVKAGKKALTPEQQQLKASVL 310 Query: 296 PLLEDIRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQ 353 +L+ +RDES +D VR+V PK+++++ ++++ + +E+ P+N+ ++ P+ Sbjct: 311 AVLDAVRDESGKDAPVRLVFEPKSKNIEQQEFIQTLLAHTSLESGAPVNLVMIGTDGRPR 370 Query: 354 VMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP 413 L IL+EW+ R + RR+ +R+ ++ R+ IL+G ++ LNIDE+I IIR D+P Sbjct: 371 QKGLRDILREWIDFRFATVTRRTRYRLGKVEDRIHILEGRMLVLLNIDEVIRIIRESDEP 430 Query: 414 KPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWN 473 KP ++ RF L++ Q + IL +RLR L +LE +I+ EL +L E+ +D LL S Sbjct: 431 KPALMERFGLSDRQAEDILEIRLRQLARLEAIRIEKELKDLREEQADLDVLLKSDTMMRR 490 Query: 474 QIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL 533 +I EI + +S D RRT E RA + + EP+TVV+S +GW+R+ Sbjct: 491 RIIKEIETDAKQYSPE-DKDPRRTLIQEERRA----AAEVRVVDEPVTVVVSQKGWVRTR 545 Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593 + H D FK GD+L T D +L T+G+ Y++P +L GRG G + L Sbjct: 546 QGHGHDAQQFTFKAGDALYDTFECRTIDVLLAFGTNGRVYSVPVASLPGGRGDGVPLTTL 605 Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653 I+L I F + ++L+ + GN F+ + +++ + GK+FL + + Sbjct: 606 IELQPGSQIAHTFAGSAEQRMLIATQGGNGFLTKIADMTGRQKGGKSFLTLDDGDAPLTP 665 Query: 654 VKVTGD--HVAVVGENRKLLIFSIDQIPEMSR-GKGVRL 689 + + HVA + N +LL+ ++D++ +S G+GV L Sbjct: 666 APIASEATHVACLSGNGRLLLVALDEVKVLSAGGRGVIL 704 >gi|83745761|ref|ZP_00942818.1| Topoisomerase IV subunit A [Ralstonia solanacearum UW551] gi|207743675|ref|YP_002260067.1| dna topoisomerase iv (subunit a) protein [Ralstonia solanacearum IPO1609] gi|83727451|gb|EAP74572.1| Topoisomerase IV subunit A [Ralstonia solanacearum UW551] gi|206595074|emb|CAQ62001.1| dna topoisomerase iv (subunit a) protein [Ralstonia solanacearum IPO1609] Length = 783 Score = 494 bits (1272), Expect = e-137, Method: Compositional matrix adjust. Identities = 270/703 (38%), Positives = 408/703 (58%), Gaps = 37/703 (5%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 E +A++L E YL YA+S +K RA+P++ DG KPV RRI+ AM EMGL A K Sbjct: 12 EPAEALTLAHYAERAYLDYAVSVVKGRALPEVADGQKPVQRRILFAMHEMGLRADAKPVK 71 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 SAR+VG+V+GK HPHGDQS YD+LVRLAQ F RYPLI GQGNFG+ DGD AAA RYTEA Sbjct: 72 SARVVGDVLGKYHPHGDQSAYDALVRLAQDFSLRYPLIDGQGNFGSRDGDGAAAMRYTEA 131 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 R+T ++ L+L+ +D+ VDF Y+ EP + P++ P +L NG SGIAVGMAT IPSH Sbjct: 132 RLTPISRLLLEELDQGTVDFIPNYDGSMDEPKLLPARLPFVLLNGASGIAVGMATEIPSH 191 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 N++E+ A +ALI + +++ L +Y+ GPDFP GG I+ S I + Y GRG +VRA Sbjct: 192 NLREVATATVALIRDDKLTSTDLTQYMPGPDFPGGGQIISSAADIAQIYETGRGSLKVRA 251 Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAK------------------RIP 296 RW +EE+ RG W +VVTE+P +++E+I EL K + Sbjct: 252 RWKIEELARGQWQLVVTELPPNTSSQKVLEEIEELTNPKVRTGKKSLTPEQLQLKQTLLG 311 Query: 297 LLEDIRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQV 354 LL+ +RDES +D VR+V PK++++ ++ + +E+ +N+ ++ P+ Sbjct: 312 LLDAVRDESGKDAPVRLVFEPKSKNIGQQEFANALLAHTSLESGAAINLVMIGTDGRPRQ 371 Query: 355 MPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK 414 L IL+EW+ +R E + RR+ +R+ ++ R+ IL+G + L I+E+I IIR D+PK Sbjct: 372 KGLRDILREWIVYRFETVTRRTRYRLGKVEDRIHILEGRQMVLLRIEEVIRIIRESDEPK 431 Query: 415 PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQ 474 ++ F+LT+ Q + IL +RLR L +LE +I+ EL NL E+ ++D LL S + Sbjct: 432 AALIQAFNLTDRQAEDILEIRLRQLARLEAIKIEQELKNLREEQGELDVLLKS------E 485 Query: 475 IACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK 534 R +KEI + + G R T + R A ++ + EP+TV++S +GW+R+ + Sbjct: 486 TMMRRRIIKEIETDAKQYGDDRRTLIQEERRAAAEVK---VIDEPVTVIVSQKGWVRTRQ 542 Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLST-----DGKAYTLPAGNLLSGRGHGEA 589 H D + FK GD+L TTD +L+ T G+ Y++ NL GRG G Sbjct: 543 GHGHDATQFGFKAGDTLYDTFECRTTDALLIFGTRDDKGTGRVYSVAVANLPGGRGDGVP 602 Query: 590 IQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649 + LI+L I + +L+ + GN F+ + +++ + GK FL + ++ Sbjct: 603 LTTLIELAPGTHIAHTLAGHAEQNVLIATRGGNGFLAKVGDMVGRQKGGKAFLTLDEGDQ 662 Query: 650 MKLVVKVTGDH--VAVVGENRKLLIFSIDQIPEM-SRGKGVRL 689 V V D VA + N +LL+F + ++ + S G+GV L Sbjct: 663 PNKPVAVAEDAYGVACLSANGRLLLFPLSEVKTLASGGRGVIL 705 >gi|294139240|ref|YP_003555218.1| DNA topoisomerase IV subunit A [Shewanella violacea DSS12] gi|293325709|dbj|BAJ00440.1| DNA topoisomerase IV, A subunit [Shewanella violacea DSS12] Length = 757 Score = 494 bits (1272), Expect = e-137, Method: Compositional matrix adjust. Identities = 269/744 (36%), Positives = 440/744 (59%), Gaps = 23/744 (3%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 + V+ +S+R E+ YL Y++ I +RA+P + DG KPV RRII+AMSE+GL + KK Sbjct: 10 DGVEQMSMRRFTEDAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELGLSSQSKHKK 69 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTE 133 SAR VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S AA RYTE Sbjct: 70 SARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 129 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 AR+++ AE++L + + VD+ ++ EP+V PS+ P++L NG +GIAVGMAT +P Sbjct: 130 ARLSKFAEVLLSELGQGTVDWGVNFDGTMKEPLVLPSRLPHILLNGITGIAVGMATDVPP 189 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN +E+ A + L+DNP+ +E+L+E++ GPD+PT I+ SR I + Y G+G + R Sbjct: 190 HNTRELVAACVELLDNPKADLERLMEFVPGPDYPTEAEIITSRADITKIYATGKGSIKAR 249 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRI 311 A + +E + IV+T +P+Q +++E+IA + AK++P++ D+RDES + VRI Sbjct: 250 AVYAIE-----NGEIVITALPHQASGGKILEQIAAQMQAKKLPMVVDLRDESDHENPVRI 304 Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371 V+ P++ +D D LM +F +D++ F +N+N+L + PQV L IL EWL R Sbjct: 305 VVIPRSNRVDCDQLMAHLFATTDLQKNFRVNLNILGLNGRPQVKGLKQILTEWLEFRLTT 364 Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431 + RR + R+ + R+ IL+ L++A+LNIDE+I IIR E+ PK ++SRF +++ Q DAI Sbjct: 365 VTRRITHRLDKVLARLHILEALMVAFLNIDEVIEIIRYEENPKAELMSRFKVSDIQADAI 424 Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491 L+L+LR L KLEE +I SE L E++K+ LL+S ++ I E+ + E + Sbjct: 425 LDLKLRHLAKLEEMKITSEQGELATERDKLQLLLSSDRRLKTLIKKELIQDGETYGDD-- 482 Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551 RR+ E S + KA + + E +TVV+S +GW+R K H +D + L +K GD Sbjct: 483 ---RRSPLVERSES-KALTEHELSPVEAVTVVLSEKGWVRCAKGHDIDGNGLSYKSGDGF 538 Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611 + + + + + G+A+ L S R GE I +L+ + + + D Sbjct: 539 LCSAAGRSNQPSVFIGSTGRAFATETHTLPSARSQGEPITTRFNLSPGEVMEHVLLGDED 598 Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVAVVGENR 668 L+ S G F+ ++++ + GK L + + K+ KLV K + + + Sbjct: 599 KFYLLASDAGYGFVGSYKDMVSRNKAGKALLSLPANAKVIKPKLVDKSKVESILAITNEG 658 Query: 669 KLLIFSIDQIPEMSRGKG---VRLQSYKDGGISDVIC--FKICEGLTWIDSAG-RSYNRS 722 ++L+FS++ +P++S+GKG + + + + +++ + + EG + AG R Sbjct: 659 RMLLFSMEALPQLSKGKGNKIIGIPTERAKNREELLTHLYVVPEGTSVTLWAGKRKLTLK 718 Query: 723 ENDLLGWLGKRGGVGSLVPKGFPR 746 +DL + G+RG G+ +P+G R Sbjct: 719 PSDLEHYRGERGRRGAKLPRGLQR 742 >gi|146291880|ref|YP_001182304.1| DNA topoisomerase IV subunit A [Shewanella putrefaciens CN-32] gi|145563570|gb|ABP74505.1| DNA topoisomerase IV subunit A [Shewanella putrefaciens CN-32] Length = 758 Score = 494 bits (1271), Expect = e-137, Method: Compositional matrix adjust. Identities = 269/755 (35%), Positives = 440/755 (58%), Gaps = 27/755 (3%) Query: 6 ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65 +S++ L + V+ + LR EE YL Y++ I +RA+P + DG KPV RRII+AMSE+G Sbjct: 1 MSDAIELSLDGVEQMPLRRFTEEAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELG 60 Query: 66 LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124 L + KKSAR VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D Sbjct: 61 LSAQSKHKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPK 120 Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184 S AA RYTEAR+++ +E++L + + VD+ ++ EP V P++ P++L NG +GIA Sbjct: 121 SFAAMRYTEARLSKFSEVLLSELGQGTVDWGANFDGTLKEPKVLPARLPHILLNGITGIA 180 Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244 VGMAT IP HNV+E+ A +AL+D+P++ +E+L+ Y+ GPD+PT I+ I + Y Sbjct: 181 VGMATDIPPHNVRELVSACVALLDDPKLELEQLMSYVPGPDYPTEAEIITPSADIAKIYE 240 Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304 GRG R RA + VE S I++T +P+Q +++E+IA + AK++P++ D+RDE Sbjct: 241 SGRGSLRARAVYTVE-----SGEIIITALPHQASSGKILEQIAGQMQAKKLPMVADLRDE 295 Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362 S + VR+V+ P++ +D D LM +F +D+E F +N+NVL + P+V L +L Sbjct: 296 SDHENPVRLVVVPRSNRVDCDQLMAHLFATTDLEKSFRVNLNVLGLDGRPRVKGLKTLLT 355 Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422 EWL R + + RR +R+ + R+ IL+ L+IA+LNIDE+I IIR D+PK +++RFS Sbjct: 356 EWLEFRVDTVKRRLEYRLDKVLSRLHILEALMIAFLNIDEVIEIIRFHDEPKVELMARFS 415 Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482 LT+ Q +AIL L+LR L KLEE++I +E + L AE+EK++ LL S ++ I Sbjct: 416 LTDKQAEAILELKLRHLAKLEEFKITAEQNELEAEREKLEQLLGSERRLKTLIK------ 469 Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542 KE+ + G R + +A +Q + EP+TVV+S +GW+R K H +D + Sbjct: 470 KELIQDAETYGDNRRSPIVQRHESRALTEQELTPSEPVTVVLSEKGWVRCAKGHDIDPLS 529 Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602 L +K GD + + + + + G+A+ + L S R GE I ++ + + Sbjct: 530 LSYKAGDQYLCSAMGRSNQAAVFIDSSGRAFATDSHTLPSARSQGEPITTRFNMAPGETM 589 Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGD 659 + + L+ + G FI +++++ + GK L + + K KL+ + Sbjct: 590 QHVIMGEEEQCYLLATDAGYGFICTYNDMVSRNKAGKALLSLPTNAKSLTPKLIDRTKEM 649 Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLT-W 711 + + ++L+FS+ +P++S+GKG ++ +D ++ + +T W Sbjct: 650 SLLAITNEGRMLLFSLAALPQLSKGKGNKIIGIPSERAKSRDELMTHLQLVPSDTSVTLW 709 Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746 + R +DL + G+RG G+ +P+G R Sbjct: 710 --AGKRKLTLKPSDLEHYRGERGRRGAKLPRGLQR 742 >gi|330873810|gb|EGH07959.1| DNA topoisomerase IV subunit A [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 751 Score = 494 bits (1271), Expect = e-137, Method: Compositional matrix adjust. Identities = 270/761 (35%), Positives = 447/761 (58%), Gaps = 29/761 (3%) Query: 6 ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65 +S+S L + V+ SL E+ YL Y++ I +RA+P + DG KPV RRII+AMSE+G Sbjct: 1 MSDSLDLSLDGVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELG 60 Query: 66 LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124 L A KKSAR VG+V+GK HPHGD + Y+++V +AQPF RY L+ GQGN+G D Sbjct: 61 LGADAKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPDDPK 120 Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184 S AA RYTEAR+++ +E++L + + D+ ++ EP V P++ PN+L NGT+GIA Sbjct: 121 SFAAMRYTEARLSRYSEVLLSELGQGTADWVPNFDGTLDEPAVLPARLPNILLNGTTGIA 180 Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244 VGMAT +P HN++E+ A + L+D P+ +I +L E+I+GPD+PT I+ R +++ Y Sbjct: 181 VGMATDVPPHNLREVASACVHLLDEPKATIPELCEHILGPDYPTEAEIITPRADLLKIYE 240 Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304 GRG R+RA + +E+ I+VT +P+QV ++++E+IA + AK++P++ D+RDE Sbjct: 241 TGRGSVRMRAVYRIED-----GDIIVTSLPHQVSGAKVLEQIAAQMQAKKLPMVADLRDE 295 Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362 S + RIV+ P++ ++ D LM+ +F +++E+ + +N+N++ + PQ+ L +L Sbjct: 296 SDHENPCRIVIIPRSNRVELDELMQHLFATTELESSYRVNINIIGLDGKPQLKNLKTLLS 355 Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422 EWL R + RR FR+ ++ R+ +L GLL AYLN+DE+I IIR + PK +++RF Sbjct: 356 EWLTFRIGTVRRRLQFRLDKVEHRLHLLDGLLTAYLNLDEVIHIIRTAEHPKAELIARFG 415 Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482 L+E Q D IL+ RLR L +LEE +++SE D L E+ K+ +LL S + + E+ Sbjct: 416 LSEIQADYILDTRLRQLARLEEMKLRSEQDALRKEQAKLQALLGSESKLRKLVRAELIAD 475 Query: 483 KEIFSKSTDLGRRRTTFCEVSRAD-KATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS 541 E + RR+ V+RA+ +A + ++ EP+TVV+S +GW+R K H +D + Sbjct: 476 AETYGDD-----RRSPI--VARAEARALSENELMPTEPVTVVLSEKGWVRCAKGHDIDAT 528 Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD 601 L +K GD K + + + + + G++Y++ A L S RG GE + + Sbjct: 529 GLSYKAGDGFKTSAIGRSNQFAVFIDSTGRSYSVAAHTLPSARGQGEPLTGKLQPPPGAT 588 Query: 602 IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL---VVKVTG 658 + + ++ S G F+V+ ++ A + GK L + K+ L V Sbjct: 589 FECVLLPEDDALYVIASDAGYGFVVKGEDLQAKNKAGKALLSLPGGAKVILPRPVADREQ 648 Query: 659 DHVAVVGENRKLLIFSIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTW 711 + +A V +LL+F + +P++ +GKG ++ + ++ ++D+ I +G T Sbjct: 649 NWLAAVTTEGRLLVFKVSDLPQLGKGKGNKIIGIPGERVASREEYVTDLAV--ITQGATL 706 Query: 712 IDSAG-RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751 + AG R+ + DL + G+RG G+ +P+GF R L Sbjct: 707 VLQAGKRTLSLKPEDLEHYKGERGRRGNKLPRGFQRVDALL 747 >gi|289628176|ref|ZP_06461130.1| DNA topoisomerase IV subunit A [Pseudomonas syringae pv. aesculi str. NCPPB3681] Length = 751 Score = 494 bits (1271), Expect = e-137, Method: Compositional matrix adjust. Identities = 273/761 (35%), Positives = 449/761 (59%), Gaps = 29/761 (3%) Query: 6 ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65 +S+S L + V+ SL E+ YL Y++ I +RA+P + DG KPV RRII+AMSE+G Sbjct: 1 MSDSLDLSLDGVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELG 60 Query: 66 LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124 L A KKSAR VG+V+GK HPHGD + Y+++V +AQPF RY L+ GQGN+G D Sbjct: 61 LGADAKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPDDPK 120 Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184 S AA RYTEAR+++ +E++L + + D+ ++ EP V P++ PN+L NGT+GIA Sbjct: 121 SFAAMRYTEARLSRYSEVLLSELGQGTADWVPNFDGTLDEPAVLPARLPNILLNGTTGIA 180 Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244 VGMAT +PSHN++E+ A + L+D+P+ ++ +L E+I+GPD+PT I+ R +++ Y Sbjct: 181 VGMATDVPSHNLREVASACVHLLDDPKATVPELCEHILGPDYPTEAEIITPRADLLKIYE 240 Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304 GRG R+RA + +E+ IVVT +P+QV ++++E+IA + AK++P++ D+RDE Sbjct: 241 TGRGSVRMRAVYRIED-----GDIVVTSLPHQVSGAKVLEQIAAQMQAKKLPMVADLRDE 295 Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362 S + RIV+ P++ ++ D LM+ +F +++E+ + +N+N++ + PQ+ L +L Sbjct: 296 SDHENPCRIVIIPRSNRVELDELMQHLFATTELESSYRVNINIIGLDGKPQLKNLKTLLG 355 Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422 EWL R + RR FR+ ++ R+ +L GLL AYLN+DE+I IIR + PK +++RF Sbjct: 356 EWLTFRIGTVRRRLQFRLDKVEHRLHLLDGLLTAYLNLDEVIHIIRTAEHPKAELIARFG 415 Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482 L+E Q D IL+ RLR L +LEE +++SE D L E+ K+ +LL S + + E+ Sbjct: 416 LSEIQADYILDTRLRQLARLEEMKLRSEQDALRKEQAKLLALLGSESKLRKLVRAELIAD 475 Query: 483 KEIFSKSTDLGRRRTTFCEVSRAD-KATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS 541 E + RR+ V+RA+ KA + ++ EP+TVV+S +GW+R K H +D Sbjct: 476 AETYGDD-----RRSPI--VARAEAKALSENELMPTEPVTVVLSEKGWVRCAKGHDIDAI 528 Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD 601 L +K GD K + + + + + G++Y++ A L S RG GE + + Sbjct: 529 GLSYKAGDGFKTSSIGRSNQFAVFIDSTGRSYSVAAHTLPSARGQGEPLTGKLQPPPGAT 588 Query: 602 IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--- 658 + + ++ S G F+V+ ++ A + GK L + + K+ L V Sbjct: 589 FECVLMPEDDALYVIASDAGYGFVVKGEDLQAKNKAGKALLSLPNGAKVILPRPVPDREQ 648 Query: 659 DHVAVVGENRKLLIFSIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTW 711 + +A V +LL+F I +P++ +GKG ++ + ++ ++D+ I +G T Sbjct: 649 NWLAAVTTEGRLLVFKISDLPQLGKGKGNKIIGIPGERVASREEYVTDLAV--IAQGATL 706 Query: 712 IDSAG-RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751 + AG R+ + DL + G+RG G+ +P+GF R L Sbjct: 707 VLHAGKRTLSLKPEDLEHYKGERGRRGNKLPRGFQRVDALL 747 >gi|17545697|ref|NP_519099.1| DNA topoisomerase IV subunit A [Ralstonia solanacearum GMI1000] gi|17427991|emb|CAD14680.1| probable dna topoisomerase iv (subunit a) protein [Ralstonia solanacearum GMI1000] Length = 781 Score = 494 bits (1271), Expect = e-137, Method: Compositional matrix adjust. Identities = 272/718 (37%), Positives = 413/718 (57%), Gaps = 38/718 (5%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 E +A++L E YL YA+S +K RA+P++ DG KPV RRI+ AM EMGL A K Sbjct: 12 EPAEALTLAHYAERAYLDYAVSVVKGRALPEVADGQKPVQRRILFAMHEMGLRADAKPVK 71 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 SAR+VG+V+GK HPHGDQS YD+LVRLAQ F RYPLI GQGNFG+ DGD AAA RYTEA Sbjct: 72 SARVVGDVLGKYHPHGDQSAYDALVRLAQDFSLRYPLIDGQGNFGSRDGDGAAAMRYTEA 131 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 R+T ++ L+L+ +D+ VDF Y+ EP + P++ P +L NG SGIAVGMAT IPSH Sbjct: 132 RLTPISRLLLEELDQGTVDFIPNYDGSMDEPRLLPARLPFVLLNGASGIAVGMATEIPSH 191 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 N++E+ AA+ALI + +++ L++Y+ GPDFP GG I+ S I + Y GRG +VRA Sbjct: 192 NLREVATAAVALIRDDKLTSTDLMQYMPGPDFPGGGQIISSAADIAQIYETGRGSLKVRA 251 Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAK------------------RIP 296 RW +E++ RG W +VVTE+P +++E+I EL K + Sbjct: 252 RWKIEDLARGQWQLVVTELPPNTSSQKVLEEIEELTNPKVRAGKKSLTPEQLQLKQTLLG 311 Query: 297 LLEDIRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQV 354 LL+ +RDES +D VR+V PK++++ ++ + +E+ +N+ ++ P+ Sbjct: 312 LLDAVRDESGKDAPVRLVFEPKSKNIGQQEFANALLAHTSLESGAAINLVMIGTDGRPRQ 371 Query: 355 MPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK 414 L IL+EW+ +R + RR+ R+ ++ R+ IL+G + LNIDE+I IIR D+PK Sbjct: 372 KGLREILREWIDYRFATVTRRTRHRLGKVEDRIHILEGRQLVLLNIDEVIRIIRESDEPK 431 Query: 415 PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQ 474 P ++ F L+E Q + IL +RLR L +LE +I+ EL +L E+ ++D LL S + Sbjct: 432 PALMQAFGLSERQAEDILEIRLRQLARLEAIKIEQELKDLREEQAELDVLLKSETMMRRR 491 Query: 475 IACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK 534 I VKEI + + G R T + R A ++ + EP+TV++S +GW+R+ + Sbjct: 492 I------VKEIETDAKQFGDDRRTLIQEERRAAAEVK---VVDEPVTVIVSQKGWVRTRQ 542 Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLST-----DGKAYTLPAGNLLSGRGHGEA 589 H D + FK GD+L TTD +L+ T G+ Y++ NL GRG G Sbjct: 543 GHGHDATQFGFKAGDTLYDTFECRTTDALLIFGTRDDKGTGRVYSVAVANLPGGRGDGVP 602 Query: 590 IQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649 + LI+L I + +L+ + GN F+ + +++ + GK FL + ++ Sbjct: 603 LTTLIELAPGTHIAHTLASHAEQNVLISTQGGNGFLAKVGDMVGRQKGGKAFLTLDEGDQ 662 Query: 650 MKLVVKVTGDH--VAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSY-KDGGISDVICF 703 V D A + N +LL+F + ++ + S G+GV L K+ ++ + F Sbjct: 663 PNKPAAVPEDAYGAACLSANGRLLLFPLAEVKTLASGGRGVILMELEKNETLAQALAF 720 >gi|160872377|ref|ZP_02062509.1| DNA topoisomerase IV, A subunit [Rickettsiella grylli] gi|159121176|gb|EDP46514.1| DNA topoisomerase IV, A subunit [Rickettsiella grylli] Length = 749 Score = 494 bits (1271), Expect = e-137, Method: Compositional matrix adjust. Identities = 273/739 (36%), Positives = 433/739 (58%), Gaps = 24/739 (3%) Query: 21 SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVG 80 +LR E+ YL Y++S I +RA+P + DG KPV RRII+AMSE+GL A KKSAR VG Sbjct: 15 ALRSFTEKAYLDYSMSVILDRALPHIGDGLKPVQRRIIYAMSELGLTALAKHKKSARTVG 74 Query: 81 EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQV 139 +V+GK HPHGD + Y+++V +AQ F RYPLI GQGN+G+ D S AA RYTE+R+T+ Sbjct: 75 DVLGKFHPHGDNACYEAMVLMAQAFSYRYPLIDGQGNWGSQDDPKSFAAMRYTESRLTRY 134 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A +L + + VD+ ++ EP P++ PN+L NG SGIAVGMAT IPSHN+ E+ Sbjct: 135 AHALLTELSDGTVDWLPNFDATLEEPKRLPARLPNILLNGASGIAVGMATDIPSHNLIEV 194 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 A + L+D P ++ L I GPDFP+ I+ R + Y+ G G R RA + E Sbjct: 195 VNACIRLLDEPNTTLTDLCALIQGPDFPSAAEIITPRSEMCTIYQQGHGVIRARAIYREE 254 Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFPKN 317 + I++T +PYQV +++IE+IAE I K++PL++D+RDES + RIV+ P++ Sbjct: 255 KNQ-----IIITGLPYQVSGAKIIEQIAEQIRDKKLPLIDDLRDESDHESPTRIVIIPRS 309 Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377 +D D LM+ +F +D+E + +N+N++ + PQV L IL+EWL +R+ + +R Sbjct: 310 SRVDTDALMDHLFATTDLERSYRINLNMIGLDGRPQVKNLRAILQEWLEYRQTTVKKRLE 369 Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLR 437 F + I +R+ +L+G LI Y ++DE+I +IR D PK ++ + L++ Q DAIL +RLR Sbjct: 370 FHLNKILQRLHLLEGFLIVYCHLDEVINLIRQVDDPKTQLMRHYKLSDIQADAILEIRLR 429 Query: 438 SLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRT 497 L KLEE ++++E +L+AE++ + +L+S Q I E++E + + DL RR+ Sbjct: 430 QLAKLEEIKLRAEQKSLIAERDNLQKILSSKTQLKRLIRSELQEDAKRYG---DL--RRS 484 Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHA 557 F E RA +A + +I EP+TV++S RGWIR+ K H D+S L FK GD+LK + Sbjct: 485 PFVE-RRAAQALQKTEIISSEPMTVILSTRGWIRAAKGHDFDVSGLSFKAGDALKSTVLG 543 Query: 558 HTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVV 617 + ++L+ + G++Y+ P +L S R GE + + + + ++V Sbjct: 544 RSNQLLVLMDSTGRSYSTPLHSLPSARSSGEPLTSRFNPPPGVQFESMISGNPDQAIVVS 603 Query: 618 SSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---DHVAVVGENRKLLIFS 674 S G FI + SE+ + R GK+ LK+S+ + ++ + +VA+ LLI S Sbjct: 604 SDAGYGFITQLSEMYSKNRNGKSLLKLSAHAHVLPLLALNAIDSSYVALATNTGYLLIIS 663 Query: 675 IDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLL 727 ++P++SRGKG ++ + ++ I+ + + S + D + Sbjct: 664 AYELPQLSRGKGNKMMQISSKKREQREEFIAKITSLPSKNSSLLLTSGKKQVVWKARDWI 723 Query: 728 GWLGKRGGVGSLVPKGFPR 746 + GKRG G +P+G + Sbjct: 724 HYRGKRGQRGRKLPRGLQK 742 >gi|148979400|ref|ZP_01815506.1| DNA topoisomerase IV subunit A [Vibrionales bacterium SWAT-3] gi|145961836|gb|EDK27129.1| DNA topoisomerase IV subunit A [Vibrionales bacterium SWAT-3] Length = 752 Score = 494 bits (1271), Expect = e-137, Method: Compositional matrix adjust. Identities = 264/687 (38%), Positives = 426/687 (62%), Gaps = 17/687 (2%) Query: 9 SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68 SN + + V+ + +R E+ YL Y++ I +RA+P + DG KPV RRII+AMSE+GL Sbjct: 2 SNEITFDGVEQLPMRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61 Query: 69 GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAA 127 + +KKSAR VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S A Sbjct: 62 ASKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFA 121 Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187 A RYTEA++++ AE++L + + V+++ ++ EP + P++ P++L NG +GIAVGM Sbjct: 122 AMRYTEAKLSKFAEVLLGELGQGTVEWQPNFDGTMKEPQMLPARLPHILLNGITGIAVGM 181 Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247 AT IP HNV+EI +A + LID+P+ + +++E + GPD+PT I+ + I + Y+ GR Sbjct: 182 ATDIPPHNVREIADATIKLIDSPKAELSEIMESVQGPDYPTEAEIISPKSDIEKIYKTGR 241 Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307 G ++RA W E GS IV+T +P+QV ++L+E+IA + AK++P+++D+RDES Sbjct: 242 GSIKMRAVWHKE----GS-DIVITALPHQVSGAKLLEQIANQMRAKKLPMVDDLRDESDH 296 Query: 308 D--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365 + RIV+ P++ +D D LM +F +D+E F +N+N++ + PQV L ILKEW+ Sbjct: 297 ENPTRIVVVPRSNRIDCDQLMSHLFASTDLEKNFRVNLNMIGLDNRPQVKGLVQILKEWI 356 Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425 RR + RR R+ + R+ IL+GLL+AYLN+DE+I IIR ED PK V++ RF +TE Sbjct: 357 EFRRTTVRRRLQHRLDKVLARLHILEGLLVAYLNLDEVIEIIRTEDDPKAVLMERFGITE 416 Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485 Q DAIL+ +LR L KLEE +I+ E D L E+EK++ LL S ++ I EI+ + Sbjct: 417 IQADAILDTKLRHLAKLEEMKIRGEQDELEKEREKLEKLLGSERRLNTLIKKEIQADADK 476 Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545 + RR+ E + A KA ++ ++ EPITVV+S +GWIR K H VD L++ Sbjct: 477 YGDD-----RRSPLVERAEA-KAMTERDLVPSEPITVVLSEKGWIRHAKGHEVDAEGLNY 530 Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605 K GD + + + + L +DG++Y+L + +L S R GE I ++++ I Sbjct: 531 KSGDKFLASAKGKSNQQAVFLGSDGRSYSLESHSLPSARSQGEPITGRLNISAGTSIRQV 590 Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVA 662 + + LV S G F+ + S++++ + GK + + ++ + + + + Sbjct: 591 VMGEDEQLWLVGSDAGYGFVCKGSDLLSKNKSGKALVNLPQSSEVIAPSPIADLESNQIL 650 Query: 663 VVGENRKLLIFSIDQIPEMSRGKGVRL 689 + ++L+F I +P++S+GKG ++ Sbjct: 651 AITNQGRMLLFPIKDLPQLSKGKGNKI 677 >gi|120600192|ref|YP_964766.1| DNA topoisomerase IV subunit A [Shewanella sp. W3-18-1] gi|120560285|gb|ABM26212.1| DNA topoisomerase IV subunit A [Shewanella sp. W3-18-1] Length = 758 Score = 494 bits (1271), Expect = e-137, Method: Compositional matrix adjust. Identities = 269/755 (35%), Positives = 441/755 (58%), Gaps = 27/755 (3%) Query: 6 ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65 +S++ L + V+ + LR EE YL Y++ I +RA+P + DG KPV RRII+AMSE+G Sbjct: 1 MSDAIELSLDGVEQMPLRRFTEEAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELG 60 Query: 66 LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124 L + KKSAR VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D Sbjct: 61 LSAQSKHKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPK 120 Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184 S AA RYTEAR+++ +E++L + + VD+ ++ EP V P++ P++L NG +GIA Sbjct: 121 SFAAMRYTEARLSKFSEVLLSELGQGTVDWGANFDGTLKEPKVLPARLPHILLNGITGIA 180 Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244 VGMAT IP HNV+E+ A +AL+D+P++ +E+L+ Y+ GPD+PT I+ I + Y Sbjct: 181 VGMATDIPPHNVRELVSACVALLDDPKLELEQLMSYVPGPDYPTEAEIITPSADIAKIYE 240 Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304 GRG R RA + VE S I++T +P+Q +++E+IA + AK++P++ D+RDE Sbjct: 241 SGRGSLRARAVYTVE-----SGEIIITALPHQASSGKILEQIAGQMQAKKLPMVADLRDE 295 Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362 S + VR+V+ P++ +D D LM +F +D+E F +N+NVL + P+V L +L Sbjct: 296 SDHENPVRLVVVPRSNRVDCDQLMAHLFATTDLEKSFRVNLNVLGLDGRPRVKGLKTLLT 355 Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422 EWL R + + RR +R+ + R+ IL+ L+IA+LNIDE+I IIR D+PK +++RFS Sbjct: 356 EWLEFRVDTVKRRLEYRLDKVLSRLHILEALMIAFLNIDEVIEIIRFHDEPKVELMARFS 415 Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482 LT+ Q +AIL L+LR L KLEE++I +E + L AE+EK++ LL S ++ I Sbjct: 416 LTDKQAEAILELKLRHLAKLEEFKITAEQNELEAEREKLEQLLGSERRLKTLIK------ 469 Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542 KE+ + G R + +A +Q + EP+TVV+S +GW+R K H +D + Sbjct: 470 KELIQDAETYGDNRRSPIVQRHESRALTEQELTPSEPVTVVLSEKGWVRCAKGHDIDPLS 529 Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602 L +K GD + + + + + G+A+ + L S R GE I ++ + + Sbjct: 530 LSYKAGDQYLCSAMGRSNQAAVFIDSSGRAFATDSHTLPSARSQGEPITTRFNMAPGETM 589 Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGD 659 + + L+ + G FI +++++ + GK L + + K KL+ + Sbjct: 590 QHVIMGEEEQCYLLATDAGYGFICTYNDMVSRNKAGKALLSLPTNAKSLPPKLIDRNREM 649 Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLT-W 711 + + ++L+FS++ +P++S+GKG ++ +D ++ + +T W Sbjct: 650 SLLAITNEGRMLLFSLEALPQLSKGKGNKIIGIPSERAKSRDELMTHLQLVPSDTSVTLW 709 Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746 + R +DL + G+RG G+ +P+G R Sbjct: 710 --AGKRKLTLKPSDLEHYRGERGRRGAKLPRGLQR 742 >gi|319425115|gb|ADV53189.1| DNA topoisomerase IV, A subunit [Shewanella putrefaciens 200] Length = 758 Score = 493 bits (1270), Expect = e-137, Method: Compositional matrix adjust. Identities = 269/755 (35%), Positives = 444/755 (58%), Gaps = 27/755 (3%) Query: 6 ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65 +S++ L + V+ + LR EE YL Y++ I +RA+P + DG KPV RRII+AMSE+G Sbjct: 1 MSDAIELSLDGVEQMPLRRFTEEAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELG 60 Query: 66 LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124 L + KKSAR VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D Sbjct: 61 LSAQSKHKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPK 120 Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184 S AA RYTEAR+++ +E++L + + VD+ ++ EP V P++ P++L NG +GIA Sbjct: 121 SFAAMRYTEARLSKFSEVLLSELGQGTVDWGANFDGTLKEPKVLPARLPHILLNGITGIA 180 Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244 VGMAT IP HNV+E+ A +AL+D+P++ +E+L+ Y+ GPD+PT I+ I + Y Sbjct: 181 VGMATDIPPHNVRELVSACVALLDDPKLELEQLMSYVPGPDYPTEAEIITPSADIAKIYE 240 Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304 GRG R RA + VE S I++T +P+Q +++E+IA + AK++P++ D+RDE Sbjct: 241 SGRGSLRARAVYTVE-----SGEIIITALPHQASSGKILEQIAGQMQAKKLPMVADLRDE 295 Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362 S + VR+V+ P++ +D D LM +F +D+E F +N+NVL + P+V L +L Sbjct: 296 SDHENPVRLVVVPRSNRVDCDQLMAHLFATTDLEKSFRVNLNVLGLDGRPRVKGLKTLLT 355 Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422 EWL R + + RR +R+ + R+ IL+ L+IA+LNIDE+I IIR D+PK +++RFS Sbjct: 356 EWLEFRVDTVKRRLEYRLDKVLSRLHILEALMIAFLNIDEVIEIIRFHDEPKVELMARFS 415 Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482 LT+ Q +AIL L+LR L KLEE++I +E + L AE+EK++ LL S ++ I E+ + Sbjct: 416 LTDKQAEAILELKLRHLAKLEEFKITAEQNELEAEREKLEQLLGSERRLKTLIKKELIQD 475 Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542 E + + RR+ + + +A +Q + EP+TVV+S +GW+R K H +D + Sbjct: 476 GETYGDN-----RRSPIVQRHES-RALTEQELTPSEPVTVVLSEKGWVRCAKGHDIDPLS 529 Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602 L +K GD + + + + + G+A+ + L S R GE I ++ + + Sbjct: 530 LSYKAGDQYLCSAMGRSNQAAVFIDSSGRAFATDSHTLPSARSQGEPITTRFNMAPGETM 589 Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGD 659 + + L+ + G FI +++++ + GK L + + K KL+ + Sbjct: 590 QHVLMGEEEQCYLLATDAGYGFICTYNDMVSRNKAGKALLSLPTNAKSLTPKLIDRTKEM 649 Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLT-W 711 + + ++L+FS+ +P++S+GKG ++ +D ++ + +T W Sbjct: 650 SLLAITNEGRMLLFSLAALPQLSKGKGNKIIGIPSERAKSRDELMTHLQLVPSETSVTLW 709 Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746 + R +DL + G+RG G+ +P+G R Sbjct: 710 --AGKRKLTLKPSDLEHYRGERGRRGAKLPRGLQR 742 >gi|114046267|ref|YP_736817.1| DNA topoisomerase IV subunit A [Shewanella sp. MR-7] gi|113887709|gb|ABI41760.1| DNA topoisomerase IV subunit A [Shewanella sp. MR-7] Length = 758 Score = 493 bits (1270), Expect = e-137, Method: Compositional matrix adjust. Identities = 266/753 (35%), Positives = 446/753 (59%), Gaps = 23/753 (3%) Query: 6 ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65 +S++ L + V+ + LR EE YL Y++ I +RA+P + DG KPV RRII+AMSE+G Sbjct: 1 MSDAIKLSLDGVEQMPLRRFTEEAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELG 60 Query: 66 LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124 L + KKSAR VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D Sbjct: 61 LSAQSKHKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPK 120 Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184 S AA RYTEAR+++ +E++L + + V++ ++ EP V P++ P++L NG +GIA Sbjct: 121 SFAAMRYTEARLSKFSEVLLSELGQGTVEWGANFDGTLKEPKVLPARLPHILLNGITGIA 180 Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244 VGMAT IP HN +E+ A +AL+D+P++ +E+L+ Y+ GPD+PT I+ I + Y Sbjct: 181 VGMATDIPPHNARELVNACVALLDDPKLELEQLMGYVPGPDYPTEAEIITPSADIAKIYE 240 Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304 GRG + RA + VE + IV+T +P+Q +++E+IA + AK++P++ D+RDE Sbjct: 241 TGRGSLKARAVYSVE-----AGEIVITALPHQASSGKILEQIAAQMQAKKLPMVADLRDE 295 Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362 S + VR+V+ P++ +D D LM +F +D+E F +N+NVL + P+V L +L Sbjct: 296 SDHENPVRLVVVPRSNRVDCDQLMAHLFATTDLEKSFRVNLNVLGLDGRPRVKGLKELLT 355 Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422 EWL R + + RR +R+ + R+ IL+ L+IA+LNIDE+I IIR D+PK +++RF+ Sbjct: 356 EWLEFRVDTVRRRLEYRLDKVLARLHILEALMIAFLNIDEVIEIIRFHDEPKAELMARFN 415 Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482 LT+ Q +AIL L+LR L KLEE++IK+E D L AE+EK++ LL+S ++ I E+ + Sbjct: 416 LTDRQAEAILELKLRHLAKLEEFKIKAEQDELEAEREKLEQLLSSERRLKTLIKKELIQD 475 Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542 E + RR+ E + +A +Q + EP+TVV+S +GW+R K H +D + Sbjct: 476 GETYGDD-----RRSPIVERHES-RALTEQELTPSEPVTVVLSEKGWVRCAKGHDIDAES 529 Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602 L +K GD + + + + + G+A+ + +L S R GE I ++ + + Sbjct: 530 LSYKAGDQYLCSAMGRSNQAAVFIDSSGRAFATDSHSLPSARSQGEPITTRFNMAPGETM 589 Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGD 659 + + L+ + G FI +++++ + GK L + K +L+ + Sbjct: 590 QHVILGEDEQCFLLATDAGYGFICTYNDMVSRNKAGKALLSLPPNAKSLPPRLIDRSREM 649 Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKG---VRLQSYKDGGISDVIC-FKICEGLTWID-- 713 + + ++L+FS++ +P++S+GKG + + S + +++ ++ T + Sbjct: 650 SILAITNEGRMLLFSLEALPQLSKGKGNKIIGIPSERAKNREELMTHLQLVPADTPVTLW 709 Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746 + R +DL + G+RG G+ +P+G R Sbjct: 710 AGKRKLTLKPSDLEHYRGERGRRGAKLPRGLQR 742 >gi|302878549|ref|YP_003847113.1| DNA topoisomerase IV, A subunit [Gallionella capsiferriformans ES-2] gi|302581338|gb|ADL55349.1| DNA topoisomerase IV, A subunit [Gallionella capsiferriformans ES-2] Length = 798 Score = 493 bits (1269), Expect = e-137, Method: Compositional matrix adjust. Identities = 280/746 (37%), Positives = 436/746 (58%), Gaps = 43/746 (5%) Query: 27 EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86 E YL YA+S +K RA+PD+ DG KPV RRI++AM EMGL + F KSAR+VGEV+GK Sbjct: 51 ERAYLEYAVSVVKGRALPDVCDGQKPVQRRILYAMREMGLTHNSTFVKSARVVGEVLGKF 110 Query: 87 HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQG 146 HPHGD S YD++VRLAQ F RYPL+ GQGNFG+ DGD++AA RYTEAR+T +A ++L Sbjct: 111 HPHGDSSAYDAMVRLAQNFSLRYPLVDGQGNFGSRDGDNSAAMRYTEARLTPIAAVLLSE 170 Query: 147 VDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALAL 206 +D VD Y+ EP + P++ P +L NG SGIAVGMAT IPSHN++EI AA Sbjct: 171 LDMGTVDLIPNYDGHFQEPAMLPARLPMVLLNGASGIAVGMATEIPSHNLREIGGAAALC 230 Query: 207 IDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSW 266 + NP+ S E++L I GPD P+G I+ S I E YR GRG ++RARW VEE+ RG W Sbjct: 231 VRNPDCSDEEILSGITGPDLPSGAQIISSPAEIRECYRTGRGSLKMRARWSVEELARGQW 290 Query: 267 CIVVTEIPYQVQKSRLIEKIAELI-----IAKR-------------IPLLEDIRDESAED 308 + V E+P+ V +++E+I EL + K+ + +L+ + DES +D Sbjct: 291 RVAVFELPHGVSSKKIMEEIEELTNPKFRLGKKTLTTEQIHNKQLILSVLDKVADESDKD 350 Query: 309 --VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366 VR+V PK+ + LM + + +E +NM ++ + P+ + I++EW Sbjct: 351 QAVRLVFEPKSGRQSVEELMAILLAHTSLECGLSINMVMIGIDGRPKQKAITDIIREWAQ 410 Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426 R + RR ++R+ I+ R+ +L+G + +LN+DE+I IIR D PK +++RF L++ Sbjct: 411 FRLATVHRRCTYRLSQINDRIHVLEGRMTVFLNLDEVIRIIRESDDPKVALIARFELSDR 470 Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486 Q + IL +RLR L ++E +I+ EL L E ++ +L S ++A EI E +I Sbjct: 471 QAEDILEIRLRQLARMEGIKIERELKGLQEEGADLNKMLASESLLRRRVAREIDE--DIK 528 Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546 + D RRT + +A++ +L +++ EP+TV+IS + W R+ H +DLSA+ FK Sbjct: 529 AYGDD---RRTL---IEQAERVSLTATVVD-EPVTVLISQKYWGRTRIGHGLDLSAVAFK 581 Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606 EGDSL A +TD+ +++S++G+ ++P L GRG G + L++L IV F Sbjct: 582 EGDSLLAAFECRSTDQCIVISSNGRVCSIPVSVLPGGRGDGVPLTTLVELAAGAKIVRVF 641 Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK-MKLVVKVTGDHVAVVG 665 + +L+ +S F+ + S++I + GK F+ + +E + V+ + V+ Sbjct: 642 CGAAEQNVLLATSASYGFVCQLSDMIGRNKAGKQFITIEGDELILPPVLYTPSEQAQVIS 701 Query: 666 ENR--KLLIFSIDQIPEMSR----GKGVRLQSYKDGGISDVICFKICEGLTWID--SAGR 717 +R +LL F+ +PEM R G+G+ + ++G + + +T I ++GR Sbjct: 702 VSRSGRLLSFA---LPEMKRLSSGGRGLIVMGLEEGDVLASLMVAEKSKITVISQTASGR 758 Query: 718 --SYNRSENDLLGWLGKRGGVGSLVP 741 + SE +LL GKR +G ++P Sbjct: 759 EQAIRLSEAELLTHFGKRARMGRMLP 784 >gi|319943519|ref|ZP_08017801.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Lautropia mirabilis ATCC 51599] gi|319743334|gb|EFV95739.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Lautropia mirabilis ATCC 51599] Length = 780 Score = 493 bits (1269), Expect = e-137, Method: Compositional matrix adjust. Identities = 261/651 (40%), Positives = 388/651 (59%), Gaps = 29/651 (4%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 EE+ ++L E YL YA+STI+ RA+PD+ DG KPV RRI+ AM EMGL A Sbjct: 10 EESTDGLTLARYAERAYLDYAISTIRSRALPDVSDGQKPVQRRILFAMHEMGLGPAAKPV 69 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSAR+VG+V+GK HPHGD + YD++VR+AQ F RYPL+ GQGNFG+ DGD AAA RYTE Sbjct: 70 KSARVVGDVLGKYHPHGDSAAYDAMVRMAQDFSLRYPLVDGQGNFGSRDGDGAAAMRYTE 129 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 AR+TQ A L+L +D+ V+F Y+ +EP + P++ P +L NG SGIAV MAT IPS Sbjct: 130 ARLTQYARLLLDEIDQGTVEFVPNYDGSATEPELLPARLPMILLNGASGIAVAMATEIPS 189 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E+ +AA+ALI +P++S E L++ + GPDFP GG I+ S + E+YR GRG RVR Sbjct: 190 HNLVEVAQAAIALIRDPKLSHEALMQIMPGPDFPGGGQIISSSADLAEAYRSGRGSIRVR 249 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAEL----------------IIAKR--I 295 AR+ +EE+ RG W +VV E+P+ V +++E++ EL + AK + Sbjct: 250 ARYHIEELARGQWQLVVDELPHGVSSQKVLEEVEELSNPKVRSGKKALTPEQLQAKSQIL 309 Query: 296 PLLEDIRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQ 353 +++ +RDES + VR+V PK ++ LL+ ++ + +ET +N+ +L + P+ Sbjct: 310 NVMDAVRDESGREAAVRLVFEPKTSRIEQALLVNTLLACTSLETSVSINLVMLGQDKRPR 369 Query: 354 VMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP 413 L IL+EW+ R + RRS+ R+ ++ R+ IL+G + LNIDE+I IIR D+P Sbjct: 370 QKTLTEILQEWIDFRLHTVRRRSAHRLGKVEDRIHILEGRQLVLLNIDEVIRIIRESDEP 429 Query: 414 KPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWN 473 KP ++ F LTE Q + IL +RLR L +LE +I+ EL L E++K+ LL S Sbjct: 430 KPALMQAFGLTERQAEDILEIRLRQLARLEAIRIEQELKELFDERKKLQGLLGS------ 483 Query: 474 QIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL 533 + + +KEI + G R T E + +Q +EP+TV+IS +GW+RS Sbjct: 484 EATLKKAVIKEIEADIKTYGDDRRTLIEAAEKAAVEARQV---EEPVTVIISAKGWVRSR 540 Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593 + H D +FK GD L A TTD++ L+++G+ Y++P L S RG G + Sbjct: 541 QGHGHDARQFNFKTGDELAGAYEVKTTDQLHALASNGRVYSIPVAGLPSARGDGVPVTSF 600 Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV 644 ++L I+ AF + +L+ + KG + + + GK FL + Sbjct: 601 VELEAGSQILHAFAAPADAGVLLATEKGFGLTCVAGDWQSRMKAGKHFLTL 651 >gi|332284680|ref|YP_004416591.1| topoisomerase IV subunit A [Pusillimonas sp. T7-7] gi|330428633|gb|AEC19967.1| topoisomerase IV subunit A [Pusillimonas sp. T7-7] Length = 767 Score = 493 bits (1269), Expect = e-137, Method: Compositional matrix adjust. Identities = 276/750 (36%), Positives = 423/750 (56%), Gaps = 41/750 (5%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 ++L E+ YL YA+S ++ RA+P++ DG KPV RRI++AM MGL GA KSAR+V Sbjct: 18 ITLAQYAEQAYLDYAVSVVRGRALPEVADGQKPVQRRILYAMQAMGLGSGAKPVKSARVV 77 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+V+GK HPHGDQ+ YD++VR+AQ FV RYPL+ GQGNFG+ DGD+AAA RYTEAR+T Sbjct: 78 GDVLGKYHPHGDQAAYDAMVRMAQDFVLRYPLVDGQGNFGSRDGDNAAAMRYTEARLTPF 137 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A ++L +DE VDF Y+ EPV+ P++ P +L NG SGIAVGMAT IPSHN++E+ Sbjct: 138 ARVLLDELDEGTVDFVSNYDGSQKEPVLLPARLPVMLLNGASGIAVGMATEIPSHNLREV 197 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 +A +ALI NP++ E L + GPDF GG I+ S I Y GRG + RARW E Sbjct: 198 AQACVALIRNPKLPDEDLYTLVPGPDFAGGGQIISSAADIAHIYASGRGSIKARARWQFE 257 Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKI------------------AELIIAKRIPLLEDI 301 E+ RG W +VV E+P +++E+I + I A + LL+ + Sbjct: 258 ELARGQWQLVVNELPPGTSSQKVLEEIEDRTNPKVKAGKKSLTSEQQQIKALMLGLLDAV 317 Query: 302 RDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359 RDES +D VR+V PK +D D + + + ME +N+ + P L Sbjct: 318 RDESGKDAAVRLVFEPKTSRIDRDEFVNMLLAQTSMEGSVSINLVCIGTDGRPGQRALRQ 377 Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS 419 +L EWL R + + RR+ +R+ + R+ +L+G ++ YLN+DE+I IR D+P+ ++ Sbjct: 378 VLTEWLGFRAQTMTRRTQYRLDKVTDRIHVLEGRMVVYLNVDEVIQTIRESDEPRAALMQ 437 Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479 RF L+E Q + IL +RLR L +LE ++I+ EL E+ + LL+ N A + Sbjct: 438 RFDLSERQAEDILEMRLRQLARLEGFKIEKELAAQRDEQAALRELLD------NPSAFKR 491 Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539 +KEI + + G R T EV A++A L+ ++E EP+TV+IS RGW+RS + H D Sbjct: 492 LMIKEIEADAKQYGDDRRTLIEV--AERAVLENRVVE-EPVTVIISQRGWLRSRQGHGHD 548 Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHN 599 S +FK GD L A+ +TD ++ S G+ YT+ +L S RG G+ + ++++ Sbjct: 549 ASQFNFKAGDGLYDAIECLSTDELVAFSNTGRVYTVAVSSLPSARGDGQPVTSMMEVESG 608 Query: 600 QDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--KLVVKVT 657 I + + ++ + G FI ++ R GK F+ + + + L ++ T Sbjct: 609 SRITHMIAGAAQQRYVLGTQAGYGFITTLKDLTTRQRAGKQFITLDDGDVLIKPLRLRDT 668 Query: 658 GDHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLTWIDSAG 716 H+A++ + + L+ ++ ++ +S G+G L G D++ + G I + G Sbjct: 669 DQHLAMLAKKGRFLVVALSELKRLSGGGRGTILMGLDAG---DILAQWVPVGPDGILAKG 725 Query: 717 RSYNRS-----ENDLLG-WLGKRGGVGSLV 740 NR D LG +LGKR G ++ Sbjct: 726 VYRNRDIVETLSLDALGEYLGKRARKGKIL 755 >gi|323142727|ref|ZP_08077444.1| DNA topoisomerase IV, A subunit [Succinatimonas hippei YIT 12066] gi|322417522|gb|EFY08139.1| DNA topoisomerase IV, A subunit [Succinatimonas hippei YIT 12066] Length = 771 Score = 493 bits (1269), Expect = e-137, Method: Compositional matrix adjust. Identities = 271/753 (35%), Positives = 447/753 (59%), Gaps = 25/753 (3%) Query: 7 SNSNTLVEENVKAVSL-RFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65 ++ N L E ++ + L RFA E YL Y+++ I++RA+P + DG KPV RRII+AM+++G Sbjct: 5 TDKNKLSLEGIEQMPLERFA-ENAYLNYSMNVIRDRALPSVSDGMKPVQRRIIYAMAKLG 63 Query: 66 LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGD 124 + A KSAR VGEV+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G++ D Sbjct: 64 IGPKAKHVKSARTVGEVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGDVEDPK 123 Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184 S AA RYTE+R++ ++++LQ ++ VDF ++ EP P++ PN+L NGT+GIA Sbjct: 124 SFAAMRYTESRLSIYSDILLQDLNTGCVDFIPNFDGTAEEPKALPARLPNILLNGTTGIA 183 Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244 VGMAT IP HN+ E+ AA+ L++NPE S+ L++++ GPD+P G I+ + +++ Y Sbjct: 184 VGMATDIPPHNLTEVANAAVYLLENPEASVNDLMQFVQGPDYPCGAEIITPKSDLLKMYE 243 Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304 G+G R RA + VE+ G IVV+ +P+QV ++ ++IA+L+ K++P++ D+ + Sbjct: 244 TGKGIVRQRAVYKVEKEG-----IVVSALPFQVSGGQVEKQIADLMAKKKLPMVSDLINA 298 Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362 S + R+++ P++ +D D LM +F ++D+E+ + +N+N+L + PQV L IL Sbjct: 299 SDHNNPCRLIIVPRSNRIDCDELMNHLFAVTDLESTYRVNLNILGLDGKPQVKNLKQILS 358 Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422 EWL R++ + +R S R+ ++RR+ +L+GLL+ +LN+DE+I IIR E+ PK ++ RF+ Sbjct: 359 EWLVFRQQTVTKRLSKRLDNVERRLHLLEGLLVVFLNLDEVIRIIREEENPKAKLIERFN 418 Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482 LTE QV+ IL +LR L +LEE +IK E + LLAEK+K++SLL S + I EI Sbjct: 419 LTEAQVEYILETKLRQLARLEEMKIKEEQEKLLAEKKKLESLLGSQARLKTFIKKEILAD 478 Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542 +++ RR E S A A + ++ P+TV++S GW+R ++ D Sbjct: 479 VKLYGDE-----RRCPVVERSEA-VAFSEDDLMPSTPVTVILSKMGWVRQASEYNADAEH 532 Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602 + ++ GD K + + + ++ G+AY++ L S RG GE + ++L + Sbjct: 533 MTYRAGDGFKDKASGRSNQQAVFITNLGRAYSVDIRELPSARGQGEPLSSKVNLQQGEFA 592 Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV---TGD 659 + S L+ S K FI + +I+ + G+ + + ++ K+ +K+ + D Sbjct: 593 EYVIIGQSNDYFLLASDKAYGFICKYEDILTRLKGGRALVSLDADAKLFAPIKLSDKSSD 652 Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYK----DGGISDVICFKIC-EGLTWIDS 714 +AV KLLI+ + +P + RGKG +L S D GI V + EG + I Sbjct: 653 LLAVASRQGKLLIYKAEDLPVLPRGKGNKLISIAGAKLDMGIDGVAAVAVLPEGSSIIIH 712 Query: 715 AG-RSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746 G R N S +++ L R G +P+GF + Sbjct: 713 CGKRILNLSASEITERLSVRTKRGDTLPRGFQK 745 >gi|66043821|ref|YP_233662.1| DNA topoisomerase IV subunit A [Pseudomonas syringae pv. syringae B728a] gi|63254528|gb|AAY35624.1| Gram negative topoisomerase IV, subunit A [Pseudomonas syringae pv. syringae B728a] Length = 751 Score = 493 bits (1269), Expect = e-137, Method: Compositional matrix adjust. Identities = 271/761 (35%), Positives = 450/761 (59%), Gaps = 29/761 (3%) Query: 6 ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65 +S+S L + V+ SL E+ YL Y++ I +RA+P + DG KPV RRII+AMSE+G Sbjct: 1 MSDSLDLSLDGVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELG 60 Query: 66 LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124 L A KKSAR VG+V+GK HPHGD + Y+++V +AQPF RY L+ GQGN+G D Sbjct: 61 LGADAKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPDDPK 120 Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184 S AA RYTEAR+++ +E++L + + D+ ++ EP V P++ PN+L NGT+GIA Sbjct: 121 SFAAMRYTEARLSRYSEVLLSELGQGTADWVPNFDGTLDEPAVLPARLPNILLNGTTGIA 180 Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244 VGMAT +P HN++E+ A + L+D+P+ ++ +L E+I+GPD+PT I+ R +++ Y Sbjct: 181 VGMATDVPPHNLREVASACVRLLDDPKATVPELCEHILGPDYPTEAEIITPRADLLKIYE 240 Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304 GRG R+RA + +E+ I+VT +P+QV ++++E+IA + AK++P++ D+RDE Sbjct: 241 TGRGSVRMRAVYRIED-----GDIIVTALPHQVSGAKVLEQIAAQMQAKKLPMVADLRDE 295 Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362 S + RIV+ P++ ++ D LM+ +F +++E+ + +N+N++ + PQ+ L +L Sbjct: 296 SDHENPCRIVIIPRSNRVELDELMQHLFATTELESSYRVNINIIGLDGKPQLKNLKTLLG 355 Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422 EWL R + RR FR+ ++ R+ +L GLL AYLN+DE+I IIR + PK +++RF Sbjct: 356 EWLTFRIGTVRRRLQFRLDKVEHRLHLLDGLLTAYLNLDEVIHIIRTAEHPKAELIARFD 415 Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482 L+E Q D IL+ RLR L +LEE +++SE D L E+ K+ +LL+S + + E+ Sbjct: 416 LSEIQADYILDTRLRQLARLEEMKLRSEQDALRKEQAKLLALLSSESKLRKLVRAELIAD 475 Query: 483 KEIFSKSTDLGRRRTTFCEVSRAD-KATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS 541 E + RR+ V+RA+ KA + ++ EP+TVV+S +GW+R K H +D + Sbjct: 476 AETYGDE-----RRSPI--VARAEAKALSENELMPTEPVTVVLSEKGWVRCAKGHDIDAT 528 Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD 601 L +K GD K + + + + + G++Y++ A L S RG GE + + Sbjct: 529 GLSYKAGDGFKTSSIGRSNQFAVFIDSTGRSYSVAAHTLPSARGQGEPLTGKLQPPPGAT 588 Query: 602 IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--- 658 + + ++ S G F+V+ ++ A + GK L + + K+ L V Sbjct: 589 FECVLLPEDDALYVIASDAGYGFVVKGEDLQAKNKAGKALLSLPAGAKVILPRPVPDREQ 648 Query: 659 DHVAVVGENRKLLIFSIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTW 711 + +A V +LL+F I +P++ +GKG ++ + ++ ++D+ I +G T Sbjct: 649 NWLAAVTTEGRLLVFKISDLPQLGKGKGNKIIGIPGERVASREEYVTDLAV--IGQGATL 706 Query: 712 IDSAG-RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751 + AG R+ + DL + G+RG G+ +P+GF R L Sbjct: 707 VLQAGKRTLSLKPEDLEHYKGERGRRGNKLPRGFQRVDALL 747 >gi|302189668|ref|ZP_07266341.1| DNA topoisomerase IV subunit A [Pseudomonas syringae pv. syringae 642] Length = 751 Score = 493 bits (1268), Expect = e-137, Method: Compositional matrix adjust. Identities = 271/761 (35%), Positives = 450/761 (59%), Gaps = 29/761 (3%) Query: 6 ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65 +S+S L + V+ SL E+ YL Y++ I +RA+P + DG KPV RRII+AMSE+G Sbjct: 1 MSDSLDLSLDGVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELG 60 Query: 66 LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124 L A KKSAR VG+V+GK HPHGD + Y+++V +AQPF RY L+ GQGN+G D Sbjct: 61 LGADAKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPDDPK 120 Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184 S AA RYTEAR+++ +E++L + + D+ ++ EP V P++ PN+L NGT+GIA Sbjct: 121 SFAAMRYTEARLSRYSEVLLSELGQGTADWVPNFDGTLDEPAVLPARLPNILLNGTTGIA 180 Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244 VGMAT +P HN++E+ A + L+D+P+ ++ +L E+I+GPD+PT I+ R +++ Y Sbjct: 181 VGMATDVPPHNLREVASACVRLLDDPKATVPELCEHILGPDYPTEAEIITPRADLLKIYE 240 Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304 GRG R+RA + +E+ I+VT +P+QV ++++E+IA + AK++P++ D+RDE Sbjct: 241 TGRGSVRMRAVYRIED-----GDIIVTSLPHQVSGAKVLEQIAAQMQAKKLPMVADLRDE 295 Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362 S + RIV+ P++ ++ D LM+ +F +++E+ + +N+N++ + PQ+ L +L Sbjct: 296 SDHENPCRIVIIPRSNRVELDELMQHLFATTELESSYRVNINIIGLDGKPQLKNLKTLLG 355 Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422 EWL R + RR FR+ ++ R+ +L GLL AYLN+DE+I IIR + PK +++RF Sbjct: 356 EWLTFRIGTVRRRLQFRLDKVEHRLHLLDGLLTAYLNLDEVIHIIRTAEHPKAELIARFD 415 Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482 L+E Q D IL+ RLR L +LEE +++SE D L E+ K+ +LL+S + + E+ Sbjct: 416 LSEIQADYILDTRLRQLARLEEMKLRSEQDALRKEQAKLLALLSSESKLRKLVRAELIAD 475 Query: 483 KEIFSKSTDLGRRRTTFCEVSRAD-KATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS 541 E + RR+ V+RA+ KA + ++ EP+TVV+S +GW+R K H +D + Sbjct: 476 AETYGDD-----RRSPI--VARAEAKALSENELMPTEPVTVVLSEKGWVRCAKGHDIDAT 528 Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD 601 L +K GD K + + + + + G++Y++ A L S RG GE + + Sbjct: 529 GLSYKAGDGFKTSSIGRSNQFAVFIDSTGRSYSVAAHTLPSARGQGEPLTGKLQPPPGAT 588 Query: 602 IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--- 658 + + ++ S G F+V+ ++ A + GK L + + K+ L V Sbjct: 589 FECVLLPEDDALYVIASDAGYGFVVKGEDLQAKNKAGKALLSLPAGAKVILPRPVPDREQ 648 Query: 659 DHVAVVGENRKLLIFSIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTW 711 + +A V +LL+F I +P++ +GKG ++ + ++ ++D+ I +G T Sbjct: 649 NWLAAVTTEGRLLVFKISDLPQLGKGKGNKIIGIPGERVASREEYVTDLAV--IGQGATL 706 Query: 712 IDSAG-RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751 + AG R+ + DL + G+RG G+ +P+GF R L Sbjct: 707 VLQAGKRTLSLKPEDLEHYKGERGRRGNKLPRGFQRVDALL 747 >gi|330971534|gb|EGH71600.1| DNA topoisomerase IV subunit A [Pseudomonas syringae pv. aceris str. M302273PT] Length = 751 Score = 493 bits (1268), Expect = e-137, Method: Compositional matrix adjust. Identities = 271/761 (35%), Positives = 450/761 (59%), Gaps = 29/761 (3%) Query: 6 ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65 +S+S L + V+ SL E+ YL Y++ I +RA+P + DG KPV RRII+AMSE+G Sbjct: 1 MSDSLDLSLDGVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELG 60 Query: 66 LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124 L A KKSAR VG+V+GK HPHGD + Y+++V +AQPF RY L+ GQGN+G D Sbjct: 61 LGADAKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPDDPK 120 Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184 S AA RYTEAR+++ +E++L + + D+ ++ EP V P++ PN+L NGT+GIA Sbjct: 121 SFAAMRYTEARLSRYSEVLLSELGQGTADWVPNFDGTLDEPAVLPARLPNILLNGTTGIA 180 Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244 VGMAT +P HN++E+ A + L+D+P+ ++ +L E+I+GPD+PT I+ R +++ Y Sbjct: 181 VGMATDVPPHNLREVASACVRLLDDPKATVAELCEHILGPDYPTEAEIITPRADLLKIYE 240 Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304 GRG R+RA + +E+ I+VT +P+QV ++++E+IA + AK++P++ D+RDE Sbjct: 241 TGRGSVRMRAVYRIED-----GDIIVTALPHQVSGAKVLEQIAAQMQAKKLPMVADLRDE 295 Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362 S + RIV+ P++ ++ D LM+ +F +++E+ + +N+N++ + PQ+ L +L Sbjct: 296 SDHENPCRIVIIPRSNRVELDELMQHLFATTELESSYRVNINIIGLDGKPQLKNLKTLLG 355 Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422 EWL R + RR FR+ ++ R+ +L GLL AYLN+DE+I IIR + PK +++RF Sbjct: 356 EWLTFRIGTVRRRLQFRLDKVEHRLHLLDGLLTAYLNLDEVIHIIRTAEHPKAELIARFD 415 Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482 L+E Q D IL+ RLR L +LEE +++SE D L E+ K+ +LL+S + + E+ Sbjct: 416 LSEIQADYILDTRLRQLARLEEMKLRSEQDALRKEQAKLLALLSSESKLRKLVRAELIAD 475 Query: 483 KEIFSKSTDLGRRRTTFCEVSRAD-KATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS 541 E + RR+ V+RA+ KA + ++ EP+TVV+S +GW+R K H +D + Sbjct: 476 AETYGDE-----RRSPI--VARAEAKALSENELMPTEPVTVVLSEKGWVRCAKGHDIDAT 528 Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD 601 L +K GD K + + + + + G++Y++ A L S RG GE + + Sbjct: 529 GLSYKAGDGFKTSSIGRSNQFAVFIDSTGRSYSVAAHTLPSARGQGEPLTGKLQPPPGAT 588 Query: 602 IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--- 658 + + ++ S G F+V+ ++ A + GK L + + K+ L V Sbjct: 589 FECVLLPEDDALYVIASDAGYGFVVKGEDLQAKNKAGKALLSLPAGAKVILPRPVPDREQ 648 Query: 659 DHVAVVGENRKLLIFSIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTW 711 + +A V +LL+F I +P++ +GKG ++ + ++ ++D+ I +G T Sbjct: 649 NWLAAVTTEGRLLVFKISDLPQLGKGKGNKIIGIPGERVASREEYVTDLAV--IGQGATL 706 Query: 712 IDSAG-RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751 + AG R+ + DL + G+RG G+ +P+GF R L Sbjct: 707 VLQAGKRTLSLKPEDLEHYKGERGRRGNKLPRGFQRVDALL 747 >gi|300704689|ref|YP_003746292.1| DNA topoisomerase iv subunit A [Ralstonia solanacearum CFBP2957] gi|299072353|emb|CBJ43691.1| DNA topoisomerase IV, subunit A [Ralstonia solanacearum CFBP2957] Length = 783 Score = 493 bits (1268), Expect = e-137, Method: Compositional matrix adjust. Identities = 270/703 (38%), Positives = 407/703 (57%), Gaps = 37/703 (5%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 E +A++L E YL YA+S +K RA+P++ DG KPV RRI+ AM EMGL A K Sbjct: 12 EPAEALTLAHYAERAYLDYAVSVVKGRALPEVADGQKPVQRRILFAMHEMGLRADAKPVK 71 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 SAR+VG+V+GK HPHGDQS YD+LVRLAQ F RYPLI GQGNFG+ DGD AAA RYTEA Sbjct: 72 SARVVGDVLGKYHPHGDQSAYDALVRLAQDFSLRYPLIDGQGNFGSRDGDGAAAMRYTEA 131 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 R+T ++ L+L+ +D+ VDF Y+ EP + P++ P +L NG SGIAVGMAT IPSH Sbjct: 132 RLTPISRLLLEELDQGTVDFIPNYDGSMDEPKLLPARLPFVLLNGASGIAVGMATEIPSH 191 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 N++E+ A +ALI + +++ L +Y+ GPDFP GG I+ S I + Y GRG +VRA Sbjct: 192 NLREVAAATVALIRDDKLTSTDLTQYMPGPDFPGGGQIISSAADIAQIYETGRGSLKVRA 251 Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAK------------------RIP 296 RW +EE+ RG W +VVTE+P +++E+I EL K + Sbjct: 252 RWKIEELARGQWQLVVTELPPNTSSQKVLEEIEELTNPKVRTGKKSLTPEQLQLKQTLLG 311 Query: 297 LLEDIRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQV 354 LL+ +RDES +D VR+V PK++++ ++ + +E+ +N+ ++ P+ Sbjct: 312 LLDAVRDESGKDAPVRLVFEPKSKNIGQQEFANALLAHTSLESGAAINLVMIGTDGRPRQ 371 Query: 355 MPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK 414 L IL+EW+ +R E + RR+ +R+ ++ R+ IL+G + L I+E+I IIR D+PK Sbjct: 372 KGLRDILREWIVYRFETVTRRTRYRLGKVEDRIHILEGRQMVLLRIEEVIRIIRESDEPK 431 Query: 415 PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQ 474 ++ F+LT+ Q + IL +RLR L +LE +I+ EL NL E+ ++D LL S + Sbjct: 432 AALIQAFNLTDRQAEDILEIRLRQLARLEAIKIEQELKNLREEQGELDVLLKSETMMRRR 491 Query: 475 IACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK 534 I VKEI + + G R T + R A ++ + EP+TV++S +GW+R+ + Sbjct: 492 I------VKEIETDAKQYGDDRRTLIQEERRAAAEVK---VIDEPVTVIVSQKGWVRTRQ 542 Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLST-----DGKAYTLPAGNLLSGRGHGEA 589 H D + FK GD+L TTD +L+ T G+ Y++ NL GRG G Sbjct: 543 GHGHDATQFGFKAGDTLYDTFECRTTDALLIFGTRDDKGTGRVYSVAVANLPGGRGDGVP 602 Query: 590 IQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649 + LI+L I + +L+ + GN F+ + +++ + GK FL + ++ Sbjct: 603 LTTLIELAPGTHIAHTLAGHAEQNVLIATRGGNGFLAKVGDMVGRQKGGKAFLTLDEGDQ 662 Query: 650 MKLVVKVTGDH--VAVVGENRKLLIFSIDQIPEM-SRGKGVRL 689 V D VA + N +LL+F + ++ + S G+GV L Sbjct: 663 PNKPAAVAEDAYGVACLSANGRLLLFPLSEVKTLASGGRGVIL 705 >gi|320321902|gb|EFW77998.1| DNA topoisomerase IV subunit A [Pseudomonas syringae pv. glycinea str. B076] gi|320330993|gb|EFW86967.1| DNA topoisomerase IV subunit A [Pseudomonas syringae pv. glycinea str. race 4] gi|330872230|gb|EGH06379.1| DNA topoisomerase IV subunit A [Pseudomonas syringae pv. glycinea str. race 4] Length = 751 Score = 493 bits (1268), Expect = e-137, Method: Compositional matrix adjust. Identities = 271/761 (35%), Positives = 449/761 (59%), Gaps = 29/761 (3%) Query: 6 ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65 +S+S L + V+ SL E+ YL Y++ I +RA+P + DG KPV RRII+AMSE+G Sbjct: 1 MSDSLDLSLDGVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELG 60 Query: 66 LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124 L A KKSAR VG+V+GK HPHGD + Y+++V +AQPF RY L+ GQGN+G D Sbjct: 61 LGADAKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPDDPK 120 Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184 S AA RYTEAR+++ +E++L + + D+ ++ EP V P++ PN+L NGT+GIA Sbjct: 121 SFAAMRYTEARLSRYSEVLLSELGQGTADWVPNFDGTLDEPAVLPARLPNILLNGTTGIA 180 Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244 VGMAT +P HN++E+ A + L+D+P+ ++ +L E+I+GPD+PT I+ R +++ Y Sbjct: 181 VGMATDVPPHNLREVASACVHLLDDPKATVPELCEHILGPDYPTEAEIITPRADLLKIYE 240 Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304 GRG R+RA + +E+ IVVT +P+QV ++++E+IA + AK++P++ D+RDE Sbjct: 241 TGRGSVRMRAVYRIED-----GDIVVTSLPHQVSGAKVLEQIAAQMQAKKLPMVADLRDE 295 Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362 S + RIV+ P++ ++ D LM+ +F +++E+ + +N+N++ + PQ+ L +L Sbjct: 296 SDHENPCRIVIIPRSNRVELDELMQHLFATTELESSYRVNINIIGLDGKPQLKNLKTLLG 355 Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422 EWL R + RR FR+ ++ R+ +L GLL AYLN+DE+I IIR + PK +++RF Sbjct: 356 EWLTFRIGTVRRRLQFRLDKVEHRLHLLDGLLTAYLNLDEVIHIIRTAEHPKAELIARFG 415 Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482 L+E Q D IL+ RLR L +LEE +++SE + L E+ K+ +LL S + + E+ Sbjct: 416 LSEIQADYILDTRLRQLARLEEMKLRSEQEALRKEQAKLLALLGSESKLRKLVRAELIAD 475 Query: 483 KEIFSKSTDLGRRRTTFCEVSRAD-KATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS 541 E + RR+ V+RA+ KA + ++ EP+TVV+S +GW+R K H +D + Sbjct: 476 AETYGDD-----RRSPI--VARAEAKALSENELMPTEPVTVVLSEKGWVRCAKGHDIDAT 528 Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD 601 L +K GD K + + + + + G++Y++ A L S RG GE + + Sbjct: 529 GLSYKAGDGFKTSSIGRSNQFAVFIDSTGRSYSVAAHTLPSARGQGEPLTGKLQPPPGAT 588 Query: 602 IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--- 658 + + ++ S G F+V+ ++ A + GK L + + K+ L V Sbjct: 589 FECVLMPEDDALYVIASDAGYGFVVKGEDLQAKNKAGKALLSLPNGAKVILPRPVPDREQ 648 Query: 659 DHVAVVGENRKLLIFSIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTW 711 + +A V +LL+F I +P++ +GKG ++ + ++ ++D+ I +G T Sbjct: 649 NWLAAVTTEGRLLVFKISDLPQLGKGKGNKIIGIPGERVASREEYVTDLAV--IAQGATL 706 Query: 712 IDSAG-RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751 + AG R+ + DL + G+RG G+ +P+GF R L Sbjct: 707 VLQAGKRTLSLKSEDLEHYKGERGRRGNKLPRGFQRVDALL 747 >gi|113971561|ref|YP_735354.1| DNA topoisomerase IV subunit A [Shewanella sp. MR-4] gi|113886245|gb|ABI40297.1| DNA topoisomerase IV subunit A [Shewanella sp. MR-4] Length = 758 Score = 492 bits (1267), Expect = e-137, Method: Compositional matrix adjust. Identities = 266/753 (35%), Positives = 445/753 (59%), Gaps = 23/753 (3%) Query: 6 ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65 +S++ L + V+ + LR EE YL Y++ I +RA+P + DG KPV RRII+AMSE+G Sbjct: 1 MSDAIKLSLDGVEQMPLRRFTEEAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELG 60 Query: 66 LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124 L + KKSAR VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D Sbjct: 61 LSAQSKHKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPK 120 Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184 S AA RYTEAR+++ +E++L + + V++ ++ EP V P++ P++L NG +GIA Sbjct: 121 SFAAMRYTEARLSKFSEVLLSELGQGTVEWGANFDGTLKEPKVLPARLPHILLNGITGIA 180 Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244 VGMAT IP HN +E+ A +AL+D+P++ +E+L+ Y+ GPD+PT I+ I + Y Sbjct: 181 VGMATDIPPHNARELVNACVALLDDPKLELEQLMGYVPGPDYPTEAEIITPSADIAKIYE 240 Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304 GRG + RA + VE + IV+T +P+Q +++E+IA + AK++P++ D+RDE Sbjct: 241 TGRGSLKARAVYSVE-----AGEIVITALPHQASSGKILEQIAAQMQAKKLPMVADLRDE 295 Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362 S + VR+V+ P++ +D D LM +F +D+E F +N+NVL + P+V L +L Sbjct: 296 SDHENPVRLVVVPRSNRVDCDQLMAHLFATTDLEKSFRVNLNVLGLDGRPRVKGLKDLLT 355 Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422 EWL R + + RR +R+ + R+ IL+ L+IA+LNIDE+I IIR D+PK +++RF+ Sbjct: 356 EWLEFRVDTVRRRLEYRLDKVLARLHILEALMIAFLNIDEVIEIIRFHDEPKAELMARFN 415 Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482 LT+ Q +AIL L+LR L KLEE++IK+E D L AE+EK++ LL S ++ I E+ + Sbjct: 416 LTDKQAEAILELKLRHLAKLEEFKIKAEQDELEAEREKLELLLGSDRRLKTLIKKELIQD 475 Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542 E + RR+ E + +A +Q + EP+TVV+S +GW+R K H +D + Sbjct: 476 GETYGDD-----RRSPIVERHES-RALTEQELTPSEPVTVVLSEKGWVRCAKGHDIDAES 529 Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602 L +K GD + + + + + G+A+ + +L S R GE I ++ + + Sbjct: 530 LSYKAGDQYLCSAMGRSNQAAVFIDSSGRAFATDSHSLPSARSQGEPITTRFNMAPGETM 589 Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGD 659 + + L+ + G FI +++++ + GK L + K +L+ + Sbjct: 590 QHVILGEDEQCFLLATDAGYGFICTYNDMVSRNKAGKALLSLPPNAKSLPPRLIDRSREM 649 Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKG---VRLQSYKDGGISDVIC-FKICEGLTWID-- 713 + + ++L+FS++ +P++S+GKG + + S + +++ ++ T + Sbjct: 650 SILAITNEGRMLLFSLEALPQLSKGKGNKIIGIPSERAKNREELMTHLQLVPADTPVTLW 709 Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746 + R +DL + G+RG G+ +P+G R Sbjct: 710 AGKRKLTLKPSDLEHYRGERGRRGAKLPRGLQR 742 >gi|119776173|ref|YP_928913.1| DNA topoisomerase IV subunit A [Shewanella amazonensis SB2B] gi|119768673|gb|ABM01244.1| DNA topoisomerase IV subunit A [Shewanella amazonensis SB2B] Length = 756 Score = 492 bits (1267), Expect = e-137, Method: Compositional matrix adjust. Identities = 270/754 (35%), Positives = 438/754 (58%), Gaps = 25/754 (3%) Query: 6 ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65 +S++ L + V+ + LR EE YL Y++ I +RA+P + DG KPV RRI++AMSE+G Sbjct: 1 MSDAIDLSLDGVEQMPLRRFTEEAYLNYSMYVIMDRALPHIGDGLKPVQRRIVYAMSELG 60 Query: 66 LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124 L+ + KKSAR VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D Sbjct: 61 LNAQSKHKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPK 120 Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184 S AA RYTEAR+++ +E++L + + VD+ ++ EP V P++ P++L NG +GIA Sbjct: 121 SFAAMRYTEARLSRFSEVLLSELGQGTVDWGVNFDGTMKEPKVLPARLPHILLNGVTGIA 180 Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244 VGMAT IP HN +E+ A + LIDNP +++L+E + GPD+PT I+ + I + Y Sbjct: 181 VGMATDIPPHNARELTRACIELIDNPATELKRLMELVPGPDYPTEAEIITPADEIAKIYE 240 Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304 GRG R+RA + +E + +V++ +P+Q S+++E+IA + AK++P++ D+RDE Sbjct: 241 SGRGSIRMRAVYEME-----NGEVVISALPHQASSSKILEQIAAQMQAKKLPMVTDLRDE 295 Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362 S + VR+VL P++ +D + LM +F +++E + +N+NV+ + P+V L +L Sbjct: 296 SDHENPVRLVLVPRSNRVDVEQLMAHLFATTELEKSYRVNLNVIGLDGRPKVKGLKDMLA 355 Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422 EWL R E + RR FR+ + R+ IL+ L+IA+LNIDE+I IIR D+PK +++RF Sbjct: 356 EWLVFRTETVRRRLQFRLDKVLARLHILEALMIAFLNIDEVIEIIRFHDEPKAELMARFG 415 Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482 L++ Q +AIL L+LR L KLEE +IK+E L E+ K++ +L S ++ I E+ + Sbjct: 416 LSDRQAEAILELKLRHLAKLEEMKIKAEQSELEEERNKLEQILGSERRLKTLIKKELEKD 475 Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542 E + G R + V +A +Q ++ EP+TVV+S +GW+R K H +D A Sbjct: 476 AETY------GDDRRSPLVVRGESRALTEQELLPTEPVTVVLSEKGWVRCAKGHDIDAGA 529 Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602 L +K GD A + + + + + G+A++ L S R GE I +L + + Sbjct: 530 LSYKAGDGFLCAAQGRSNQQSVFIDSSGRAFSTDTHTLPSARSQGEPITTRFNLAPGETM 589 Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-- 660 + + L+ S G F+ +++I+ + GK L + S K +V D Sbjct: 590 EHVLLGEEQHHYLLASDAGYGFVCSFADMISRNKAGKALLSLPSGAKALAPRRVDKDANP 649 Query: 661 --VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSA--- 715 +A+ E R +L+F +D +P++++GKG ++ + I L DSA Sbjct: 650 SILAITNEGR-MLVFGLDALPQLAKGKGNKIIGIPSERAKNREELLIHLHLVPADSAVTL 708 Query: 716 ---GRSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746 R +DL + G+RG G+ +P+G R Sbjct: 709 WAGKRKLTLKSSDLEHYRGERGRRGAKLPRGLQR 742 >gi|257482430|ref|ZP_05636471.1| DNA topoisomerase IV subunit A [Pseudomonas syringae pv. tabaci ATCC 11528] gi|331009744|gb|EGH89800.1| DNA topoisomerase IV subunit A [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 751 Score = 492 bits (1267), Expect = e-137, Method: Compositional matrix adjust. Identities = 271/761 (35%), Positives = 449/761 (59%), Gaps = 29/761 (3%) Query: 6 ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65 +S+S L + V+ SL E+ YL Y++ I +RA+P + DG KPV RRII+AMSE+G Sbjct: 1 MSDSLDLSLDGVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELG 60 Query: 66 LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124 L A KKSAR VG+V+GK HPHGD + Y+++V +AQPF RY L+ GQGN+G D Sbjct: 61 LGADAKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPDDPK 120 Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184 S AA RYTEAR+++ +E++L + + D+ ++ EP V P++ PN+L NGT+GIA Sbjct: 121 SFAAMRYTEARLSRYSEVLLSELGQGTADWVPNFDGTLDEPAVLPARLPNILLNGTTGIA 180 Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244 VGMAT +P HN++E+ A + L+D+P+ ++ +L E+I+GPD+PT I+ R +++ Y Sbjct: 181 VGMATDVPPHNLREVASACVHLLDDPKATVPELCEHILGPDYPTEAEIITPRADLLKIYE 240 Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304 GRG R+RA + +E+ IVVT +P+QV ++++E+IA + AK++P++ D+RDE Sbjct: 241 TGRGSVRMRAVYRIED-----GDIVVTSLPHQVSGAKVLEQIAAQMQAKKLPMVADLRDE 295 Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362 S + RIV+ P++ ++ D LM+ +F +++E+ + +N+N++ + PQ+ L +L Sbjct: 296 SDHENPCRIVIIPRSNRVELDELMQHLFATTELESSYRVNINIIGLDGKPQLKNLKTLLG 355 Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422 EWL R + RR FR+ ++ R+ +L GLL AYLN+DE+I IIR + PK +++RF Sbjct: 356 EWLTFRIGTVRRRLQFRLDKVEHRLHLLDGLLTAYLNLDEVIHIIRTAEHPKAELIARFG 415 Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482 L+E Q D IL+ RLR L +LEE +++SE + L E+ K+ +LL S + + E+ Sbjct: 416 LSEIQADYILDTRLRQLARLEEMKLRSEQEALRKEQAKLLALLGSESKLRKLVRAELIAD 475 Query: 483 KEIFSKSTDLGRRRTTFCEVSRAD-KATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS 541 E + RR+ V+RA+ KA + ++ EP+TVV+S +GW+R K H +D + Sbjct: 476 AETYGDD-----RRSPI--VARAEAKALSENELMPTEPVTVVLSEKGWVRCAKGHDIDAT 528 Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD 601 L +K GD K + + + + + G++Y++ A L S RG GE + + Sbjct: 529 GLSYKAGDGFKTSSIGRSNQFAVFIDSTGRSYSVAAHTLPSARGQGEPLTGKLQPPPGAT 588 Query: 602 IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--- 658 + + ++ S G F+V+ ++ A + GK L + + K+ L V Sbjct: 589 FECVLMPEDDALYVIASDAGYGFVVKGEDLQAKNKAGKALLSLPNGAKVILPRPVPDREQ 648 Query: 659 DHVAVVGENRKLLIFSIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTW 711 + +A V +LL+F I +P++ +GKG ++ + ++ ++D+ I +G T Sbjct: 649 NWLAAVTTEGRLLVFKISDLPQLGKGKGNKIIGIPGERVASREEYVTDLAV--IAQGATL 706 Query: 712 IDSAG-RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751 + AG R+ + DL + G+RG G+ +P+GF R L Sbjct: 707 VLQAGKRTLSLKPEDLEHYKGERGRRGNKLPRGFQRVDALL 747 >gi|330865875|gb|EGH00584.1| DNA topoisomerase IV subunit A [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 751 Score = 492 bits (1267), Expect = e-137, Method: Compositional matrix adjust. Identities = 273/761 (35%), Positives = 448/761 (58%), Gaps = 29/761 (3%) Query: 6 ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65 +S+S L + V+ SL E+ YL Y++ I +RA+P + DG KPV RRII+AMSE+G Sbjct: 1 MSDSLDLSLDGVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELG 60 Query: 66 LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124 L A KKSAR VG+V+GK HPHGD + Y+++V +AQPF RY L+ GQGN+G D Sbjct: 61 LGADAKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPDDPK 120 Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184 S AA RYTEAR+++ +E++L + + D+ ++ EP V P++ PN+L NGT+GIA Sbjct: 121 SFAAMRYTEARLSRYSEVLLSELGQGTADWVPNFDGTLDEPAVLPARLPNILLNGTTGIA 180 Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244 VGMAT +PSHN +E+ A + L+D+P+ ++ +L E+I+GPD+PT I+ R +++ Y Sbjct: 181 VGMATDVPSHNRREVASACVHLLDDPKATVPELCEHILGPDYPTEAEIITPRADLLKIYE 240 Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304 GRG R+RA + +E+ IVVT +P+QV ++++E+IA + AK++P++ D+RDE Sbjct: 241 TGRGSVRMRAVYRIED-----GDIVVTSLPHQVSGAKVLEQIAAQMQAKKLPMVADLRDE 295 Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362 S + RIV+ P++ ++ D LM+ +F +++E+ + +N+N++ + PQ+ L +L Sbjct: 296 SDHENPCRIVIIPRSNRVELDELMQHLFATTELESSYRVNINIIGLDGKPQLKNLKTLLG 355 Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422 EWL R + RR FR+ ++ R+ +L GLL AYLN+DE+I IIR + PK +++RF Sbjct: 356 EWLTFRIGTVRRRLQFRLDKVEHRLHLLDGLLTAYLNLDEVIHIIRTAEHPKAELIARFG 415 Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482 L+E Q D IL+ RLR L +LEE +++SE D L E+ K+ +LL S + + E+ Sbjct: 416 LSEIQADYILDTRLRQLARLEEMKLRSEQDALRKEQAKLLALLGSESKLRKLVRAELIAD 475 Query: 483 KEIFSKSTDLGRRRTTFCEVSRAD-KATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS 541 E + RR+ V+RA+ KA + ++ EP+TVV+S +GW+R K H +D Sbjct: 476 AETYGDD-----RRSPI--VARAEAKALSENELMPTEPVTVVLSEKGWVRCAKGHDIDAI 528 Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD 601 L +K GD K + + + + + G++Y++ A L S RG GE + + Sbjct: 529 GLSYKAGDGFKTSSIGRSNQFAVFIDSTGRSYSVAAHTLPSARGQGEPLTGKLQPPPGAT 588 Query: 602 IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--- 658 + + ++ S G F+V+ ++ A + GK L + + K+ L V Sbjct: 589 FECVLMPEDDALYVIASDAGYGFVVKGEDLQAKNKAGKALLSLPNGAKVILPRPVPDREQ 648 Query: 659 DHVAVVGENRKLLIFSIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTW 711 + +A V +LL+F I +P++ +GKG ++ + ++ ++D+ I +G T Sbjct: 649 NWLAAVTTEGRLLVFKISDLPQLGKGKGNKIIGIPGERVASREEYVTDLAV--IAQGATL 706 Query: 712 IDSAG-RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751 + AG R+ + DL + G+RG G+ +P+GF R L Sbjct: 707 VLHAGKRTLSLKPEDLEHYKGERGRRGNKLPRGFQRVDALL 747 >gi|207725315|ref|YP_002255711.1| dna topoisomerase iv (subunit a) protein [Ralstonia solanacearum MolK2] gi|206590550|emb|CAQ37512.1| dna topoisomerase iv (subunit a) protein [Ralstonia solanacearum MolK2] Length = 783 Score = 492 bits (1267), Expect = e-137, Method: Compositional matrix adjust. Identities = 269/703 (38%), Positives = 407/703 (57%), Gaps = 37/703 (5%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 E +A++L E YL YA+S +K RA+P++ DG KPV RRI+ AM EMGL A K Sbjct: 12 EPAEALTLAHYAERAYLDYAVSVVKGRALPEVADGQKPVQRRILFAMHEMGLRADAKPVK 71 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 SAR+VG+V+GK HPHGDQS YD+LVRLAQ F RYPLI GQGNFG+ DGD AAA RYTEA Sbjct: 72 SARVVGDVLGKYHPHGDQSAYDALVRLAQDFSLRYPLIDGQGNFGSRDGDGAAAMRYTEA 131 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 R+T ++ L+L+ +D+ VDF Y+ EP + P++ P +L NG SGIAVGMAT IPSH Sbjct: 132 RLTPISRLLLEELDQGTVDFIPNYDGSMDEPKLLPARLPFVLLNGASGIAVGMATEIPSH 191 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 N++E+ A +ALI + +++ L +Y+ GPDFP GG I+ S I + Y GRG +VRA Sbjct: 192 NLREVATATVALIRDDKLTSTDLTQYMPGPDFPGGGQIISSAADIAQIYETGRGSLKVRA 251 Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAK------------------RIP 296 RW +EE+ RG W +VVTE+P +++E+I EL K + Sbjct: 252 RWKIEELARGQWQLVVTELPPNTSSQKVLEEIEELTNPKVRTGKKSLTPEQLQLKQTLLG 311 Query: 297 LLEDIRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQV 354 LL+ +RDES +D VR+V PK++++ ++ + +E+ +N+ ++ P+ Sbjct: 312 LLDAVRDESGKDAPVRLVFEPKSKNIGQQEFANALLAHTSLESGAAINLVMIGTDGRPRQ 371 Query: 355 MPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK 414 L IL+EW+ +R E + RR+ +R+ ++ R+ IL+G + L I+E+I IIR D+PK Sbjct: 372 KGLRDILREWIVYRFETVTRRTRYRLGKVEDRIHILEGRQMVLLRIEEVIRIIRESDEPK 431 Query: 415 PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQ 474 ++ F+LT+ Q + IL +RLR L +LE +I+ EL NL E+ ++D LL S + Sbjct: 432 AALIQAFNLTDRQAEDILEIRLRQLARLEAIKIEQELKNLREEQGELDVLLKSETMMRRR 491 Query: 475 IACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK 534 I +KEI + + G R T + R A ++ + EP+TV++S +GW+R+ + Sbjct: 492 I------IKEIETDAKQYGDDRRTLIQEERRAAAEVK---VIDEPVTVIVSQKGWVRTRQ 542 Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLST-----DGKAYTLPAGNLLSGRGHGEA 589 H D + FK GD+L TTD +L+ T G+ Y++ NL GRG G Sbjct: 543 GHGHDATQFGFKAGDTLYDTFECRTTDALLIFGTRDDKGTGRVYSVAVANLPGGRGDGVP 602 Query: 590 IQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649 + LI+L I + +L+ + GN F+ + +++ + GK FL + ++ Sbjct: 603 LTTLIELAPGTHIAHTLAGHAEQNVLIATRGGNGFLAKVGDMVGRQKGGKAFLTLDEGDQ 662 Query: 650 MKLVVKVTGDH--VAVVGENRKLLIFSIDQIPEM-SRGKGVRL 689 V D VA + N +LL+F + ++ + S G+GV L Sbjct: 663 PNKPAAVAEDAYGVACLSANGRLLLFPLSEVKTLASGGRGVIL 705 >gi|71734792|ref|YP_272849.1| DNA topoisomerase IV subunit A [Pseudomonas syringae pv. phaseolicola 1448A] gi|71555345|gb|AAZ34556.1| DNA topoisomerase IV, A subunit [Pseudomonas syringae pv. phaseolicola 1448A] Length = 751 Score = 492 bits (1267), Expect = e-137, Method: Compositional matrix adjust. Identities = 271/761 (35%), Positives = 449/761 (59%), Gaps = 29/761 (3%) Query: 6 ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65 +S+S L + V+ SL E+ YL Y++ I +RA+P + DG KPV RRII+AMSE+G Sbjct: 1 MSDSLDLSLDGVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELG 60 Query: 66 LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124 L A KKSAR VG+V+GK HPHGD + Y+++V +AQPF RY L+ GQGN+G D Sbjct: 61 LGADAKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPDDPK 120 Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184 S AA RYTEAR+++ +E++L + + D+ ++ EP V P++ PN+L NGT+GIA Sbjct: 121 SFAAMRYTEARLSRYSEVLLSELGQGTADWVPNFDGTLDEPAVLPARLPNILLNGTTGIA 180 Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244 VGMAT +P HN++E+ A + L+D+P+ ++ +L E+I+GPD+PT I+ R +++ Y Sbjct: 181 VGMATDVPPHNLREVASACVHLLDDPKATVPELCEHILGPDYPTEAEIITPRADLLKIYE 240 Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304 GRG R+RA + +E+ IVVT +P+QV ++++E+IA + AK++P++ D+RDE Sbjct: 241 TGRGSVRMRAVYRIED-----GDIVVTSLPHQVSGAKVLEQIAAQMQAKKLPMVADLRDE 295 Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362 S + RIV+ P++ ++ D LM+ +F +++E+ + +N+N++ + PQ+ L +L Sbjct: 296 SDHENPCRIVIIPRSNRVELDELMQHLFATTELESSYRVNINIIGLDGKPQLKNLKTLLG 355 Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422 EWL R + RR FR+ ++ R+ +L GLL AYLN+DE+I IIR + PK +++RF Sbjct: 356 EWLTFRIGTVRRRLQFRLDKVEHRLHLLDGLLTAYLNLDEVIHIIRTAEHPKAELIARFG 415 Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482 L+E Q D IL+ RLR L +LEE +++SE + L E+ K+ +LL S + + E+ Sbjct: 416 LSEIQADYILDTRLRQLARLEEMKLRSEQEALRKEQAKLLALLGSESKLRKLVRAELIAD 475 Query: 483 KEIFSKSTDLGRRRTTFCEVSRAD-KATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS 541 E + RR+ V+RA+ KA + ++ EP+TVV+S +GW+R K H +D + Sbjct: 476 AETYGDD-----RRSPI--VARAEAKALSENELMPTEPVTVVLSEKGWVRCAKGHDIDAT 528 Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD 601 L +K GD K + + + + + G++Y++ A L S RG GE + + Sbjct: 529 GLSYKAGDGFKTSSIGRSNQFAVFIDSTGRSYSVAAHTLPSARGQGEPLTGKLQPPPGAA 588 Query: 602 IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--- 658 + + ++ S G F+V+ ++ A + GK L + + K+ L V Sbjct: 589 FECVLMPEDDALYVIASDAGYGFVVKGEDLQAKNKAGKALLSLPNGAKVILPRPVPDREQ 648 Query: 659 DHVAVVGENRKLLIFSIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTW 711 + +A V +LL+F I +P++ +GKG ++ + ++ ++D+ I +G T Sbjct: 649 NWLAAVTTEGRLLVFKISDLPQLGKGKGNKIIGIPGERVASREEYVTDLAV--IAQGATL 706 Query: 712 IDSAG-RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751 + AG R+ + DL + G+RG G+ +P+GF R L Sbjct: 707 VLQAGKRTLSLKPEDLEHYKGERGRRGNKLPRGFQRVDALL 747 >gi|261253832|ref|ZP_05946405.1| topoisomerase IV subunit A [Vibrio orientalis CIP 102891] gi|260937223|gb|EEX93212.1| topoisomerase IV subunit A [Vibrio orientalis CIP 102891] Length = 758 Score = 492 bits (1266), Expect = e-136, Method: Compositional matrix adjust. Identities = 261/687 (37%), Positives = 425/687 (61%), Gaps = 17/687 (2%) Query: 9 SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68 S+ + + V+ + +R E+ YL Y++ I +RA+P + DG KPV RRII+AMSE+GL Sbjct: 2 SSEITYDGVEQLPMRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61 Query: 69 GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAA 127 A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S A Sbjct: 62 AAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFA 121 Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187 A RYTEA++++ AE++L + + V+++ ++ EP + P++ P++L NG +GIAVGM Sbjct: 122 AMRYTEAKLSKFAEVLLGELGQGTVEWQPNFDGTMKEPQMLPARLPHILLNGVTGIAVGM 181 Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247 AT IP HNV+E+ +AA+ LID+P+ + ++ ++ GPD+PT I+ + + + YR GR Sbjct: 182 ATDIPPHNVREVADAAIHLIDHPKAELPDVMNFVQGPDYPTEAEIISPKADLEKIYRTGR 241 Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307 G ++RA W E GS IV+T +P+QV ++L+E+IA + AK++P+++D+RDES Sbjct: 242 GSVKMRAVWHKE----GS-DIVITALPHQVSGAKLLEQIANQMRAKKLPMVDDLRDESDH 296 Query: 308 D--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365 + RIV+ P++ +D D LM +F +D+E F +N+N++ + PQV L IL EW+ Sbjct: 297 ENPTRIVVVPRSNRIDCDQLMNHLFASTDLEKSFRVNLNMIGLDNRPQVKGLVQILSEWI 356 Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425 RR + RR R+ + R+ IL+GLLIAYLN+DE+I IIR ED PK V+++RF +TE Sbjct: 357 EFRRTTVRRRLQHRLDKVMARLHILEGLLIAYLNLDEVIEIIRTEDDPKAVLMARFGITE 416 Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485 Q DAIL+ +LR L KLEE +I+ E D L E+EK++ LL S ++ + EI+ + Sbjct: 417 IQADAILDTKLRHLAKLEEMKIRGEQDELEKEREKLEKLLGSERRMNTLLKKEIQADADK 476 Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545 + RR+ E + A KA ++ ++ EPITVV+S +GWIR K H VD L++ Sbjct: 477 YGDD-----RRSPLVERAEA-KALTERDLVPSEPITVVLSEKGWIRHAKGHDVDAEGLNY 530 Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605 K GD + + + L DG++Y+L + ++ S R GE I +++N I Sbjct: 531 KSGDKYLAHARGKSNQQAVFLGNDGRSYSLESHSMPSARSQGEPITGRLNINAGTSIRHV 590 Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVA 662 + + L+ S G F+ + S++++ + GK + + + ++ + + + D + Sbjct: 591 VMGEEEQLWLIGSDAGYGFVCKGSDLLSKNKSGKALVTLPANSEVISPQTISNLDTDEIL 650 Query: 663 VVGENRKLLIFSIDQIPEMSRGKGVRL 689 + ++L+F I +P++ +GKG ++ Sbjct: 651 TITNQGRMLLFPIKDLPQLGKGKGNKI 677 >gi|330984579|gb|EGH82682.1| DNA topoisomerase IV subunit A [Pseudomonas syringae pv. lachrymans str. M301315] Length = 751 Score = 492 bits (1266), Expect = e-136, Method: Compositional matrix adjust. Identities = 271/761 (35%), Positives = 448/761 (58%), Gaps = 29/761 (3%) Query: 6 ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65 +S+S L + V+ SL E+ YL Y++ I +RA+P + DG KPV RRII+AMSE+G Sbjct: 1 MSDSLDLSLDGVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELG 60 Query: 66 LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124 L A KKSAR VG+V+GK HPHGD + Y+++V +AQPF RY L+ GQGN+G D Sbjct: 61 LGADAKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPDDPK 120 Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184 S AA RYTEAR+++ +E++L + + D+ ++ EP V P++ PN+L NGT+GIA Sbjct: 121 SFAAMRYTEARLSRYSEVLLSELGQGTADWVPNFDGTLDEPAVLPARLPNILLNGTTGIA 180 Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244 VGMAT +P HN++E+ A + L+D+P ++ +L E+I+GPD+PT I+ R +++ Y Sbjct: 181 VGMATDVPPHNLREVASACVHLLDDPNATVPELCEHILGPDYPTEAEIITPRADLLKIYE 240 Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304 GRG R+RA + +E+ IVVT +P+QV ++++E+IA + AK++P++ D+RDE Sbjct: 241 TGRGSVRMRAVYRIED-----GDIVVTSLPHQVSGAKVLEQIAAQMQAKKLPMVADLRDE 295 Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362 S + RIV+ P++ ++ D LM+ +F +++E+ + +N+N++ + PQ+ L +L Sbjct: 296 SDHENPCRIVIIPRSNRVELDELMQHLFATTELESSYRVNINIIGLDGKPQLKNLKTLLG 355 Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422 EWL R + RR FR+ ++ R+ +L GLL AYLN+DE+I IIR + PK +++RF Sbjct: 356 EWLTFRIGTVRRRLQFRLDKVEHRLHLLDGLLTAYLNLDEVIHIIRTAEHPKAELIARFG 415 Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482 L+E Q D IL+ RLR L +LEE +++SE + L E+ K+ +LL S + + E+ Sbjct: 416 LSEIQADYILDTRLRQLARLEEMKLRSEQEALRKEQAKLLALLGSESKLRKLVRAELIAD 475 Query: 483 KEIFSKSTDLGRRRTTFCEVSRAD-KATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS 541 E + RR+ V+RA+ KA + ++ EP+TVV+S +GW+R K H +D + Sbjct: 476 AETYGDD-----RRSPI--VARAEAKALSENELMPTEPVTVVLSEKGWVRCAKGHDIDAT 528 Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD 601 L +K GD K + + + + + G++Y++ A L S RG GE + + Sbjct: 529 GLSYKAGDGFKTSSIGRSNQFAIFIDSTGRSYSVAAHTLPSARGQGEPLTGKLQPPPGAT 588 Query: 602 IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--- 658 + + ++ S G F+V+ ++ A + GK L + + K+ L V Sbjct: 589 FECVLMPEDDALYVIASDAGYGFVVKGEDLQAKNKAGKALLSLPNGAKVILPRPVPDREQ 648 Query: 659 DHVAVVGENRKLLIFSIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTW 711 + +A V +LL+F I +P++ +GKG ++ + ++ ++D+ I +G T Sbjct: 649 NWLAAVTTEGRLLVFKISDLPQLGKGKGNKIIGIPGERVASREEYVTDLAV--IAQGATL 706 Query: 712 IDSAG-RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751 + AG R+ + DL + G+RG G+ +P+GF R L Sbjct: 707 VLQAGKRTLSLKPEDLEHYKGERGRRGNKLPRGFQRVDALL 747 >gi|126732309|ref|ZP_01748109.1| DNA topoisomerase IV subunit A [Sagittula stellata E-37] gi|126707178|gb|EBA06244.1| DNA topoisomerase IV subunit A [Sagittula stellata E-37] Length = 809 Score = 492 bits (1266), Expect = e-136, Method: Compositional matrix adjust. Identities = 233/400 (58%), Positives = 300/400 (75%) Query: 19 AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78 A LR A+ ERYL YALSTI RA+PD RDG KPVHRRI++AM + L F KSA+I Sbjct: 16 AEPLRRAIGERYLTYALSTIMHRALPDARDGLKPVHRRILYAMRRLRLSSTGGFLKSAKI 75 Query: 79 VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138 G+ +G HPHGD ++YD++ RLAQ F RYPL+ GQGNFGNIDGD+ AA RYTEARMT Sbjct: 76 SGDTMGDFHPHGDAAIYDAMARLAQDFTIRYPLVDGQGNFGNIDGDNPAASRYTEARMTV 135 Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198 ++E +L+G+DE++VDFR Y+ EP V P+ +PNLLANG+SGIAVGMAT+IP HN+ E Sbjct: 136 MSEALLEGLDENSVDFRPNYDGRLEEPSVLPASYPNLLANGSSGIAVGMATNIPPHNIGE 195 Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258 + A L LI +P + L++Y+ GPDFPTGG+IVE E+I +YR GRG R+RARW V Sbjct: 196 LINACLHLIRSPNAVDDTLMQYVPGPDFPTGGVIVEPAENIATAYRTGRGSIRLRARWHV 255 Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318 E++GRG W VVTEIPYQVQKS+L+E+IAELI K+IP+L D+RDESA+D+R+VL PK + Sbjct: 256 EDLGRGQWQAVVTEIPYQVQKSKLVERIAELIQTKKIPVLADVRDESADDIRMVLEPKTK 315 Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378 ++DPDLLM +F SD+E RF LNMNVL G P+V L L+ +L RR+VL RRS Sbjct: 316 NVDPDLLMNMLFRNSDLEIRFSLNMNVLIDGVTPKVCSLKECLRAFLDFRRDVLIRRSKH 375 Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV 418 RM ID R+E+L+GL+IA+LN+D +I IIR +D PK ++ Sbjct: 376 RMAKIDNRLEVLEGLIIAFLNLDRVIDIIRYDDDPKAALM 415 Score = 319 bits (817), Expect = 1e-84, Method: Compositional matrix adjust. Identities = 157/328 (47%), Positives = 219/328 (66%), Gaps = 1/328 (0%) Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482 L++ Q +AILN+RLRSLR+LEE ++ +E D L+ E+ ++ LL S QW +I E+ EV Sbjct: 482 LSDVQAEAILNMRLRSLRRLEELELVNERDKLMEERAGLEDLLASEDMQWGRIKEELNEV 541 Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542 K+ F+K G+R TTF E + A+ L+ AMIE+EP+TVV S GWIR++ H Sbjct: 542 KKTFTKGYKRGQRLTTFAEATEAEDVPLE-AMIEREPVTVVCSKMGWIRAMTGHIALDRE 600 Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602 L FK+GD + HA TTD++L+ ++G+ YT+ A NL GRG GE ++L++DL ++ +I Sbjct: 601 LKFKDGDGPRFIFHAETTDKLLVFGSNGRFYTVLAANLPGGRGMGEPLRLMVDLPNDTEI 660 Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVA 662 V V+ +LLV SS G+ F+V E E+IA TR GK L V K + V+G+ VA Sbjct: 661 VDILVHRPGQRLLVASSAGDGFLVPEDEVIAQTRAGKQVLNVKDPVKAMICKPVSGNAVA 720 Query: 663 VVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRS 722 VVGENRK+LIF +D++PEM RGKGVRLQ YKDGG+SDV F + GL+W+D AGR+ S Sbjct: 721 VVGENRKVLIFMLDELPEMGRGKGVRLQKYKDGGLSDVRTFTLEAGLSWLDPAGRTRTVS 780 Query: 723 ENDLLGWLGKRGGVGSLVPKGFPRSGKF 750 ++L W+ KR G G + P+GFPR KF Sbjct: 781 SDELTEWVAKRAGSGRMAPRGFPRDNKF 808 >gi|332139905|ref|YP_004425643.1| DNA topoisomerase IV subunit A [Alteromonas macleodii str. 'Deep ecotype'] gi|327549927|gb|AEA96645.1| DNA topoisomerase IV subunit A [Alteromonas macleodii str. 'Deep ecotype'] Length = 761 Score = 492 bits (1266), Expect = e-136, Method: Compositional matrix adjust. Identities = 270/745 (36%), Positives = 431/745 (57%), Gaps = 25/745 (3%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 + V+ + LR E+ YL Y++ I +RA+P + DG KPV RRII+AMS++GL+ A +KK Sbjct: 10 DGVEQLPLRRFTEDAYLNYSMYVIMDRALPHISDGLKPVQRRIIYAMSDLGLNASAKYKK 69 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTE 133 SAR VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S AA RYTE Sbjct: 70 SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 129 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 A++++ AE++L + + VD+ ++ EP V P++ P++L NG +GIAVGMAT IP Sbjct: 130 AKLSRFAEVLLNELGQGTVDWVPNFDGTLEEPSVLPARLPHILLNGVTGIAVGMATDIPP 189 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HNV+E+ A L+DN + + +L ++ GPD+PT I+ + I + Y GRG ++R Sbjct: 190 HNVRELANACAMLLDNSKAELSDVLAHVNGPDYPTEAEIITPKADIQKLYETGRGSIKMR 249 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRI 311 A + E S +V+T +P+Q ++++E+IA + AK++P++ D+RDES + R+ Sbjct: 250 AVYSEE-----SGDVVITALPHQASGAKILEQIAAQMQAKKLPMVSDLRDESDHENPTRL 304 Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371 V+ P++ +D LM+ +F +D+E + +N+N++ + PQV L IL EWL +R++ Sbjct: 305 VITPRSNRVDVTQLMQHLFATTDLEKNYRVNLNMIGLDGRPQVKDLRTILTEWLQYRKDT 364 Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431 + RR +R+ + R+ IL+GLLIA+LNIDE+I IIR DKPKP ++SRF L++ Q +AI Sbjct: 365 VTRRLQYRLDKVLARLHILEGLLIAFLNIDEVIEIIRTYDKPKPELMSRFGLSDKQAEAI 424 Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491 L L+LR L KLEE +IK E D L AE++K+ LL S ++ I KEI + + Sbjct: 425 LELKLRHLAKLEEMKIKGEQDELAAERDKLQQLLGSDRRLKTLIK------KEILADAEK 478 Query: 492 LG-RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDS 550 G RR+ E A KA ++ ++ E +TVV+S +GW R K H +D L +K GD Sbjct: 479 YGDDRRSPIVERGEA-KALSEKELVPAESVTVVLSEKGWARCAKGHDIDAEGLSYKAGDG 537 Query: 551 LKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDS 610 + + + + + G+ ++ A L S R GE + + + A + Sbjct: 538 YLSSAEGKSNQPAVFMDSSGRTFSCDAHGLPSARSQGEPLTGRFSIVGGESFQHAIMAQD 597 Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---DHVAVVGEN 667 K LV S G F+ ++++ + GK +L + + K+ VT D + Sbjct: 598 DSKFLVGSDAGYGFVGTFKDMVSKNKAGKAYLSLPTAAKVMKPTPVTNPDTDWCLSISNE 657 Query: 668 RKLLIFSIDQIPEMSRGKG---VRLQSYKDGGISDV--ICFKICEGLTWIDSAG-RSYNR 721 ++L+F + +P + +GKG + + S K + I + +G AG R+ Sbjct: 658 GRMLMFPLRDLPSLGKGKGNKLINIPSAKSQSREEYVKILTVVPDGTAIKVGAGKRNMTL 717 Query: 722 SENDLLGWLGKRGGVGSLVPKGFPR 746 S DL + G+RG G+ +P+G R Sbjct: 718 SAEDLTHYQGERGRRGNKLPRGLQR 742 >gi|85713134|ref|ZP_01044167.1| DNA topoisomerase IV subunit A [Idiomarina baltica OS145] gi|85693050|gb|EAQ31015.1| DNA topoisomerase IV subunit A [Idiomarina baltica OS145] Length = 760 Score = 491 bits (1265), Expect = e-136, Method: Compositional matrix adjust. Identities = 270/735 (36%), Positives = 440/735 (59%), Gaps = 29/735 (3%) Query: 27 EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86 E+ YL Y++ I +RA+P + DG KPV RRII+AMSE+GL A +KKSAR VG+V+GK Sbjct: 16 EDAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELGLSALAKYKKSARTVGDVLGKF 75 Query: 87 HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQVAELILQ 145 HPHGD + Y+++V +AQPF R+PL+ GQGN+G+ D S AA RYTEA+++ +E++L Sbjct: 76 HPHGDSACYEAMVLMAQPFSYRHPLVDGQGNWGSPDDPKSFAAMRYTEAKLSHFSEVLLS 135 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 + + VD+ ++ EP + P++ P++L NG +GIAVGMAT IP HN +E+ A Sbjct: 136 ELGQGTVDWIPNFDGTMREPKMLPARLPHILLNGVTGIAVGMATDIPPHNAREVANACAL 195 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265 LID P +++++E++ GPD+PT I+ + + + Y GRG ++RA++ +EE Sbjct: 196 LIDRPSADLDEVMEHLQGPDYPTDAEIITPKADLKKLYESGRGTIKMRAKYHLEENE--- 252 Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFPKNRSLDPD 323 IV+T +P+Q ++++E+IA + AK++PL+ D+RDES + R+V+ P++ +D + Sbjct: 253 --IVLTALPHQASGAKVLEQIAAQMQAKKLPLVSDLRDESDHENPTRLVVVPRSNRVDTE 310 Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383 LM+ +F +D+E ++ +N+N+L + PQV PL GIL EWL R++ + RR +R+ + Sbjct: 311 QLMKHLFATTDLEKQYRVNLNILGLDGRPQVKPLVGILGEWLEFRKQTVTRRLQYRLDKV 370 Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLE 443 + R+ IL+GLLIA+LNIDE+I IIR ED+PK ++ RF+LT+ Q +AIL L+LR L +LE Sbjct: 371 EARLHILQGLLIAFLNIDEVIEIIRYEDEPKKELIKRFALTDTQAEAILELKLRHLARLE 430 Query: 444 EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG-RRRTTFCEV 502 E ++K E + L E+EK+ LLNS ++ I KEI + + G RR+ E Sbjct: 431 EMKLKGEQEELEKEREKLSQLLNSDRRLKTLIK------KEILADAEKYGDERRSPLVER 484 Query: 503 SRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDR 562 + A KA + + E +TVV+S +GW+R K H VD L +K GDS + A + Sbjct: 485 AEA-KALSETELTPAEAVTVVLSAKGWVRCAKGHDVDGEKLSYKSGDSFQAAAQGKSNLP 543 Query: 563 ILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGN 622 ++ L T G++Y+ A +L S R GE + ++ + + A + L+ S G Sbjct: 544 VVFLDTSGRSYSCEAHSLPSARSQGEPLTGRFNMVAGEMVQHALMARDEQYYLLSSDAGY 603 Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD---HVAVVGENRKLLIFSIDQIP 679 F+ + ++++ + GK L + + K+ V+V V VV ++L+F I +P Sbjct: 604 GFVCQFKDLVSRNKNGKAILTLPTGAKVMPPVEVKDTAQAQVIVVSNEGRMLVFPIADLP 663 Query: 680 EMSRGKG--------VRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLG 731 ++++GKG +R QS ++ ++ + E + + R DL + G Sbjct: 664 QLAKGKGNKMISIPTLRAQSREEYVVA--VSVASPESTVTLHAGRRKLTLKPADLAHYHG 721 Query: 732 KRGGVGSLVPKGFPR 746 +RG G+ +P+G R Sbjct: 722 ERGRRGNKLPRGLQR 736 >gi|91789023|ref|YP_549975.1| DNA topoisomerase IV subunit A [Polaromonas sp. JS666] gi|91698248|gb|ABE45077.1| DNA topoisomerase IV subunit A [Polaromonas sp. JS666] Length = 784 Score = 491 bits (1265), Expect = e-136, Method: Compositional matrix adjust. Identities = 268/707 (37%), Positives = 398/707 (56%), Gaps = 47/707 (6%) Query: 21 SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK------- 73 SL + YL YALS +K RA+PD+ DG KPV RRI+++M+ MGL FG A Sbjct: 20 SLAAYAQRAYLEYALSVVKGRALPDVCDGQKPVQRRILYSMARMGLGFGGANGASGAKPV 79 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSAR+VG+V+GK HPHGDQ+ YD++VR+AQ F QRYPL+ GQGNFG+ DGD AAA RYTE Sbjct: 80 KSARVVGDVLGKYHPHGDQAAYDAMVRMAQDFSQRYPLVDGQGNFGSRDGDGAAAMRYTE 139 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 AR+ ++ L+L +DE VDF Y+ EP P++ P L NG SGIAVG+AT IPS Sbjct: 140 ARLARITTLLLDELDEGTVDFAPNYDGSFEEPRQLPARLPFTLLNGASGIAVGLATEIPS 199 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN++E+ +A +ALI P +S E+L I GPD+P GG I+ S I +Y GRG +VR Sbjct: 200 HNLREVADACVALIKTPRLSDEELYTLIAGPDYPGGGQIISSTAEIAAAYSTGRGSLKVR 259 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAK------------------RI 295 ARW +E++ RG W +VV E+P V R++E+I EL K + Sbjct: 260 ARWKIEDLARGQWQLVVQELPPGVSTQRVLEEIEELTNPKIKAGKKALSQEQVQLKQTVL 319 Query: 296 PLLEDIRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQ 353 +L+ +RDES++D VR+V PK + L+ ++ + +E+ +N+ ++ + P Sbjct: 320 SVLDVVRDESSKDAAVRLVFEPKTSRIGQSELINTLLAHTSLESSASINLTMVGLDGKPT 379 Query: 354 VMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP 413 L +L EW+ R+ + RRS R+ + R+ IL+G + LNIDE+IAIIR D+P Sbjct: 380 QKTLRQMLGEWIEFRQATVQRRSQHRLDKVLDRIHILEGRQLVLLNIDEVIAIIRQSDEP 439 Query: 414 KPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWN 473 K +++RFSL+E Q + IL +RLR L +LE +I+ EL L E+ K++ +L S Sbjct: 440 KAALIARFSLSERQAEDILEIRLRQLARLEAIKIEQELKTLREEQGKLEEILGS------ 493 Query: 474 QIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL 533 A VKEI + + R T + A+K + + + EP+TVV+S +GW+R+ Sbjct: 494 PAALRRLLVKEIEADAKQFADPRRTLIQ---AEKKAVLEVKVLDEPVTVVVSAKGWVRAR 550 Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593 H D ++ FK GD L T D +L + G+ Y++P +L RG G+ + L Sbjct: 551 SGHGHDAASFAFKAGDGLYATFECRTVDTLLAFGSRGRIYSVPVASLPGARGDGQPLTTL 610 Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653 IDL +V F + LL+ +S G F+ + + + GK F+ + E + Sbjct: 611 IDLESGTQLVHYFAGPANATLLLSASGGYGFLATVENMTSRLKAGKAFISCAEGETVCRP 670 Query: 654 VKVTG----------DHVAVVGENRKLLIFSIDQIP-EMSRGKGVRL 689 V+G HVA ++L F I ++ + + G+G+ L Sbjct: 671 SHVSGGTGATPLNPATHVACASTGGRILTFEIAELKLQAAGGRGLML 717 >gi|330951454|gb|EGH51714.1| DNA topoisomerase IV subunit A [Pseudomonas syringae Cit 7] Length = 751 Score = 491 bits (1265), Expect = e-136, Method: Compositional matrix adjust. Identities = 270/761 (35%), Positives = 450/761 (59%), Gaps = 29/761 (3%) Query: 6 ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65 +S+S L + V+ SL E+ YL Y++ I +RA+P + DG KPV RRII+AMSE+G Sbjct: 1 MSDSLDLSLDGVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELG 60 Query: 66 LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124 L A KKSAR VG+V+GK HPHGD + Y+++V +AQPF RY L+ GQGN+G D Sbjct: 61 LGADAKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPDDPK 120 Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184 S AA RYTEAR+++ +E++L + + D+ ++ EP V P++ PN+L NGT+GIA Sbjct: 121 SFAAMRYTEARLSRYSEVLLSELGQGTADWVPNFDGTLDEPAVLPARLPNILLNGTTGIA 180 Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244 VGMAT +P HN++E+ A + L+D+P+ ++ +L E+I+GPD+PT I+ R +++ Y Sbjct: 181 VGMATDVPPHNLREVASACVRLLDDPKATVPELCEHILGPDYPTEAEIITPRADLLKIYE 240 Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304 GRG R+RA + +E+ I+VT +P+QV ++++E+IA + AK++P++ D+RDE Sbjct: 241 TGRGSVRMRAVYRIED-----GDIIVTSLPHQVSGAKVLEQIAAQMQAKKLPMVADLRDE 295 Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362 S + RIV+ P++ ++ D LM+ +F +++E+ + +N+N++ + PQ+ L +L Sbjct: 296 SDHENPCRIVIIPRSNRVELDELMQHLFATTELESSYRVNINIIGLDGKPQLKNLKTLLG 355 Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422 EWL R + RR FR+ ++ R+ +L GLL AYLN+DE+I IIR + PK +++RF Sbjct: 356 EWLTFRIGTVRRRLQFRLDKVEHRLHLLDGLLTAYLNLDEVIHIIRTAEHPKAELIARFD 415 Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482 L+E Q D IL+ RLR L +LEE +++SE D L E+ K+ +LL+S + + E+ Sbjct: 416 LSEIQADYILDTRLRQLARLEEMKLRSEQDALRKEQAKLLALLSSESKLRKLVRAELIAD 475 Query: 483 KEIFSKSTDLGRRRTTFCEVSRAD-KATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS 541 E + RR+ V+RA+ KA + ++ +P+TVV+S +GW+R K H +D + Sbjct: 476 AETYGDD-----RRSPI--VARAEAKALSENELMPTQPVTVVLSEKGWVRCAKGHDIDAT 528 Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD 601 L +K GD K + + + + + G++Y++ A L S RG GE + + Sbjct: 529 GLSYKAGDGFKTSSIGRSNQFAVFIDSTGRSYSVAAHTLPSARGQGEPLTGKLQPPPGAT 588 Query: 602 IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--- 658 + + ++ S G F+V+ ++ A + GK L + + K+ L V Sbjct: 589 FECVLLPEDDALYVIASDAGYGFVVKGEDLQAKNKAGKALLSLPAGAKVILPRPVPDREQ 648 Query: 659 DHVAVVGENRKLLIFSIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTW 711 + +A V +LL+F I +P++ +GKG ++ + ++ ++D+ I +G T Sbjct: 649 NWLAAVTTEGRLLVFKISDLPQLGKGKGNKIIGIPGERVASREEYVTDLAV--IGQGATL 706 Query: 712 IDSAG-RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751 + AG R+ + DL + G+RG G+ +P+GF R L Sbjct: 707 VLQAGKRTLSLKPEDLEHYKGERGRRGNKLPRGFQRVDALL 747 >gi|56475779|ref|YP_157368.1| DNA topoisomerase IV subunit A [Aromatoleum aromaticum EbN1] gi|56311822|emb|CAI06467.1| DNA topoisomerase IV subunit A (EC 5.99.1.-) [Aromatoleum aromaticum EbN1] Length = 786 Score = 491 bits (1265), Expect = e-136, Method: Compositional matrix adjust. Identities = 272/724 (37%), Positives = 409/724 (56%), Gaps = 32/724 (4%) Query: 27 EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86 E YLAYA+S +K RA+P + DG KPV RRI++AM+EM L + KSAR+VG+VIGK Sbjct: 42 ERAYLAYAMSVVKSRALPQVEDGMKPVQRRILYAMNEMRLSAASKHVKSARVVGDVIGKY 101 Query: 87 HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQG 146 HPHGD SVYD++VR+AQ F RYPL+ GQGNFG+ DGDSAAA RYTE R+T +AEL+L Sbjct: 102 HPHGDTSVYDAMVRVAQDFSLRYPLVDGQGNFGSRDGDSAAAMRYTECRLTPIAELLLAE 161 Query: 147 VDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALAL 206 +D VDF Y+ EP + P++ P +L NG SGIAVGMAT IP HN++E+ +A L Sbjct: 162 IDRGTVDFVPNYDGAFHEPQLLPARLPFVLLNGASGIAVGMATEIPPHNLREVADAVCHL 221 Query: 207 IDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSW 266 I +P+ ++ +L + GPDFP GG ++ S ++I ++Y GRG R+RARW VEE+ RG W Sbjct: 222 IRHPDAGLDDVLPLLPGPDFPGGGQLISSADAIRDAYAGGRGSLRMRARWHVEELARGQW 281 Query: 267 CIVVTEIPYQVQKSRLIEKIAELIIAKR------------------IPLLEDIRDESAED 308 +++ E+P+ V + ++ I L + + +LE +RDES++ Sbjct: 282 RVIIDELPHGVSAASVLAGIETLTNPQPRGGKKDVSQEQKNLKQLVLGVLETVRDESSDK 341 Query: 309 --VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRV----PQVMPLDGILK 362 VRIVL P++ D M + + +E +NM ++ G V PQ L IL+ Sbjct: 342 SPVRIVLEPRSSRQSRDEFMAVLLAHTSLENSVSVNMTMIGHGPVHGGRPQQKNLVQILR 401 Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422 EW+ R + RR+ R+ +DRR+ IL G +IA+L+I+++I +IR D+PKP ++ F Sbjct: 402 EWIDFRYVTVERRTRHRLDEVDRRLHILAGRMIAFLHIEDVIRVIRESDEPKPALIDAFG 461 Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482 L+E Q + IL +RLR L +LE ++I+ EL L E+EK+ LL+S I + Sbjct: 462 LSEIQAEDILEIRLRQLARLEGFRIEKELAELKEEREKLQHLLDSRAAMTKLI------L 515 Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542 KEI + G R T E A + + EP+TV++S GW+R+ + H +D +A Sbjct: 516 KEITDDAKKYGDERRTLIESVAA--VAPAEISVPDEPVTVIVSKNGWVRARQGHGIDAAA 573 Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602 + +K GD + +T +++L T G+AYT+ L GRG G I L+D + + Sbjct: 574 VTYKAGDFAFALVETRSTWPLVVLDTHGRAYTIRVAELPGGRGDGVPIATLVDFQNGAKL 633 Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVA 662 + + +S G FI E + R GK F+ V EK+ +V G+ +A Sbjct: 634 AQVVSAEPESAWMFANSGGYGFICTLLEATSRQRAGKAFMTVEKGEKVLAPARVLGERIA 693 Query: 663 VVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRS 722 V EN +LL+F ++ + G+GV + + +G + E + + GR + Sbjct: 694 AVSENGRLLVFPRSEMKVQAGGRGVIVMALDEGESMVAVAAPADEAVLKVAGIGRGNKAT 753 Query: 723 ENDL 726 DL Sbjct: 754 SVDL 757 >gi|117919184|ref|YP_868376.1| DNA topoisomerase IV subunit A [Shewanella sp. ANA-3] gi|117611516|gb|ABK46970.1| DNA topoisomerase IV subunit A [Shewanella sp. ANA-3] Length = 758 Score = 491 bits (1265), Expect = e-136, Method: Compositional matrix adjust. Identities = 267/754 (35%), Positives = 447/754 (59%), Gaps = 25/754 (3%) Query: 6 ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65 +S++ L + V+ + LR EE YL Y++ I +RA+P + DG KPV RRII+AMSE+G Sbjct: 1 MSDAIKLSLDGVEQMPLRRFTEEAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELG 60 Query: 66 LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124 L + KKSAR VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D Sbjct: 61 LSAQSKHKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPK 120 Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184 S AA RYTEAR+++ +E++L + + V++ ++ EP V P++ P++L NG +GIA Sbjct: 121 SFAAMRYTEARLSKFSEVLLSELGQGTVEWGANFDGTLKEPKVLPARLPHILLNGITGIA 180 Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244 VGMAT IP HN +E+ A +AL+D+P++ +E+L+ Y+ GPD+PT I+ I + Y Sbjct: 181 VGMATDIPPHNARELVNACVALLDDPKLELEQLMGYVPGPDYPTEAEIITPAADIAKVYE 240 Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304 GRG + RA + V+ + IV+T +P+Q +++E+IA + AK++P++ D+RDE Sbjct: 241 TGRGSIKARAVYSVD-----AGEIVITALPHQASSGKILEQIAAQMQAKKLPMVADLRDE 295 Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362 S + VR+V+ P++ +D D LM +F +D+E F +N+NVL + P+V L +L Sbjct: 296 SDHENPVRLVVVPRSNRVDCDQLMAHLFATTDLEKSFRVNLNVLGLDGRPRVKGLKELLT 355 Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422 EWL R + + RR +R+ + R+ IL+ L+IA+LNIDE+I IIR D+PK +++RF+ Sbjct: 356 EWLEFRVDTVRRRLEYRLDKVLARLHILEALMIAFLNIDEVIEIIRFHDEPKAELMARFN 415 Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482 LT+ Q +AIL L+LR L KLEE++IK+E D L AE+EK++ LL+S ++ I E+ + Sbjct: 416 LTDRQAEAILELKLRHLAKLEEFKIKAEQDELEAEREKLEQLLSSDRRLKTLIKKELIQD 475 Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542 E + RR+ E + +A +Q + EP+TVV+S +GW+R K H +D + Sbjct: 476 GETYGDD-----RRSPIVERHES-RALTEQELTPSEPVTVVLSEKGWVRCAKGHDIDAES 529 Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602 L +K GD + + + + + G+A+ + +L S R GE I ++ + + Sbjct: 530 LSYKAGDQYLCSAMGRSNQAAVFIDSSGRAFATDSHSLPSARSQGEPITTRFNMAPGETM 589 Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-- 660 + + L+ + G FI +++++ + GK L + + K + + Sbjct: 590 QHVILGEDEQCFLLATDAGYGFICTYNDMVSRNKAGKALLSLPTNAKSLPPRPIDRNREM 649 Query: 661 --VAVVGENRKLLIFSIDQIPEMSRGKG---VRLQSYKDGGISDVIC-FKICEGLTWID- 713 +A+ E R +L+FS++ +P++S+GKG + + S + +++ ++ T + Sbjct: 650 SILAITNEGR-MLLFSLEALPQLSKGKGNKIIGIPSERAKNREELMTHLQLVPADTSVTL 708 Query: 714 -SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746 + R +DL + G+RG G+ +P+G R Sbjct: 709 WAGKRKLTLKPSDLEHYRGERGRRGAKLPRGLQR 742 >gi|157373920|ref|YP_001472520.1| DNA topoisomerase IV subunit A [Shewanella sediminis HAW-EB3] gi|157316294|gb|ABV35392.1| DNA topoisomerase (ATP-hydrolyzing) [Shewanella sediminis HAW-EB3] Length = 757 Score = 491 bits (1264), Expect = e-136, Method: Compositional matrix adjust. Identities = 270/755 (35%), Positives = 440/755 (58%), Gaps = 27/755 (3%) Query: 6 ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65 +S++ L + V+ + LR E YL Y++ I +RA+P + DG KPV RRII+AMSE+G Sbjct: 1 MSDAIDLSLDGVEQMPLRRFTEAAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELG 60 Query: 66 LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124 L + KKSAR VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D Sbjct: 61 LSAQSKHKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPK 120 Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184 S AA RYTEAR+++ +E++L + + VD+ ++ EP+V PS+ P++L NG +GIA Sbjct: 121 SFAAMRYTEARLSKFSEVLLSELGQGTVDWGVNFDGTMKEPLVLPSRLPHILLNGITGIA 180 Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244 VGMAT +P HN +E+ A + L+DNP+ + K++E++ GPD+PT I+ I + Y Sbjct: 181 VGMATDVPPHNTRELVAACIELLDNPKADLAKIMEFVPGPDYPTEAEIITPSSDISKIYT 240 Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304 GRG + RA + +E + +V+T +P+Q +++E++A + AK++P++ D+RDE Sbjct: 241 TGRGSIKARAVYKIE-----NGEVVITALPHQASGGKILEQVAAQMQAKKLPMVVDLRDE 295 Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362 S + VRIV+ P++ +D D LM +F +D+E F +N+N+L + PQV L IL Sbjct: 296 SDHENPVRIVVVPRSNRVDCDQLMAHLFATTDLEKSFRVNLNILGLNGRPQVKGLKQILT 355 Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422 EWL +R + + RR R+ I R+ IL+ L+ A+LNIDE+I IIR ED PK ++SRF+ Sbjct: 356 EWLEYRFQTVTRRVQHRLDKILSRLHILEALMTAFLNIDEVIEIIRYEDNPKAELMSRFN 415 Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482 LT+ Q DAIL+L+LR L KLEE++IK E L AE++K+ LL+S ++ I E+ + Sbjct: 416 LTDIQADAILDLKLRHLAKLEEFKIKGEQSELEAERDKLQLLLSSDRRMKTLIKKELIQD 475 Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542 E + RR+ E + KA +Q + E +TVV+S +GW+R K H +D A Sbjct: 476 GETYGDD-----RRSPLVERGES-KALTEQELAPVEAVTVVLSEKGWVRCAKGHDIDAKA 529 Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602 L +K GD + + + + + G+A+ L S R GE I +L+ + + Sbjct: 530 LSYKSGDGFLCSAAGRSNQPSVFIGSTGRAFATETHTLPSARSQGEPITTRFNLSPGEVM 589 Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGD 659 + D L+ S G F+ ++++ + GK L + + K+ ++V K + Sbjct: 590 EHVLLGDDDKFYLLASDAGYGFVGSYKDMVSRNKAGKALLSLPANAKVIVPQIVDKSKVE 649 Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLT-W 711 + + ++L+FS++ +P++S+GKG ++ ++ +S + +T W Sbjct: 650 SILAITNEGRMLLFSLEALPQLSKGKGNKIIGIPSERAKSREELLSHLHVVPEDTAVTLW 709 Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746 + R +DL + G+RG G+ +P+G R Sbjct: 710 --AGKRKLTLKPSDLEHYRGERGRRGAKLPRGLQR 742 >gi|257092304|ref|YP_003165945.1| DNA topoisomerase IV subunit A [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257044828|gb|ACV34016.1| DNA topoisomerase IV, A subunit [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 781 Score = 491 bits (1264), Expect = e-136, Method: Compositional matrix adjust. Identities = 273/701 (38%), Positives = 416/701 (59%), Gaps = 29/701 (4%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 E+ +V L + YL YA++ +K RA+PD++DG KPV RR++ AM E+GL A K Sbjct: 31 EDDDSVLLHDSAARDYLEYAIAVVKGRALPDVKDGLKPVQRRVLFAMRELGLSATAKPVK 90 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 SAR+VG+VIGK HPHGD S YD++VR+AQPF+ RYPL+ GQGNFG+ DGD+AAA RYTEA Sbjct: 91 SARVVGDVIGKYHPHGDTSAYDAMVRVAQPFMLRYPLVDGQGNFGSRDGDNAAAMRYTEA 150 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 R+T +AEL+L + E VDF+ Y+ EP P++ P LL NG SGIAVGMAT IPSH Sbjct: 151 RLTAIAELLLGELGEGTVDFQPNYDGSFDEPAFLPARLPFLLLNGASGIAVGMATEIPSH 210 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 N++E+ AA+ I++P +++L+E+I GPD+P GG I+ S I +Y GRG RVRA Sbjct: 211 NLREVAAAAIHKIEHPAAGLDELMEHIPGPDYPGGGQIISSAADIAAAYASGRGSLRVRA 270 Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP------------------ 296 R+ EE+ RG+W +V E+P V ++++ +I L+ + P Sbjct: 271 RYEFEEMARGAWQLVFRELPPGVSSAKVLSEIGALLNPQPRPGKKAIEQSAAQLKTLMAS 330 Query: 297 LLEDIRDESA--EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQV 354 L+ RDES +DVR+V P + +D + + + + +ET P+N+ + + P Sbjct: 331 QLDRARDESGKDDDVRLVFEPSSSRIDRNEFVALLLAHTSLETSAPINLVAVGIDGRPCQ 390 Query: 355 MPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK 414 L ++ EW R + RR+ FR+Q D R+ IL+G I +LNIDE+I IIR D PK Sbjct: 391 KSLTDLIGEWCTFRIRTVHRRTEFRLQKADDRIHILEGRHIVFLNIDEVIRIIRESDDPK 450 Query: 415 PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQ 474 +++RF+L++ Q + IL +RLR L +LE +I+ ELD L E+E + LL S Q Sbjct: 451 AALIARFTLSDRQAEDILEIRLRQLARLEGIRIEQELDKLRGEREGLLKLLGSDALLRRQ 510 Query: 475 IACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK 534 + IRE+K K D RRT + A ++ + A + EP+TV+IS +GW R + Sbjct: 511 V---IREIKADAEKHGDA--RRTIILAATTASRSEV--AAVADEPVTVIISEKGWARVRQ 563 Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLI 594 H +DLS + FK+GD A + D ++++S++G+A+T+ +L GRG G + + Sbjct: 564 GHGLDLSGVVFKDGDRAGSAQECRSVDSLVIISSEGRAFTVAIASLPDGRGMGAPLSSFV 623 Query: 595 DLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654 DL + I + +LL + G FI ++++ + GK FL V + + Sbjct: 624 DLGGGK-IAHVLTGRADDELLFAKTSGYGFICTYGDLLSRQKAGKAFLSVEEGAGILPPL 682 Query: 655 KVTG-DHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKD 694 ++ G DH+A + E+ +LL+F + Q+ ++ GKGV++ +D Sbjct: 683 RIAGKDHLAALSEDGRLLVFPLAQMKRLASGKGVQIIGLRD 723 >gi|163749332|ref|ZP_02156581.1| DNA topoisomerase IV subunit A [Shewanella benthica KT99] gi|161331051|gb|EDQ01977.1| DNA topoisomerase IV subunit A [Shewanella benthica KT99] Length = 757 Score = 491 bits (1264), Expect = e-136, Method: Compositional matrix adjust. Identities = 270/753 (35%), Positives = 443/753 (58%), Gaps = 23/753 (3%) Query: 6 ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65 +S++ L + V+ +S+R E+ YL Y++ I +RA+P + DG KPV RRII+AMSE+G Sbjct: 1 MSDAINLSLDGVEQMSMRRFTEDAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELG 60 Query: 66 LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124 L + KKSAR VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D Sbjct: 61 LSAQSKHKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPK 120 Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184 S AA RYTEAR+++ +E++L + + VD+ ++ EP+V PS+ P++L NG +GIA Sbjct: 121 SFAAMRYTEARLSKFSEVLLSELGQGTVDWGVNFDGTMKEPLVLPSRLPHILLNGITGIA 180 Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244 VGMAT +P HN +E+ A + L+DNP+ +E+L+E++ GPD+PT I+ R I + Y Sbjct: 181 VGMATDVPPHNTRELVAACVELLDNPKADLERLMEFVPGPDYPTEAEIITPRADIAKIYS 240 Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304 G+G + RA + VE S IV+T +P+Q +++E+IA + AK++P++ D+RDE Sbjct: 241 TGKGSIKARAVYAVE-----SGEIVITALPHQASGGKILEQIAAQMQAKKLPMVVDLRDE 295 Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362 S + VRI++ P++ +D D LM +F +D++ F +N+N++ + PQV L IL Sbjct: 296 SDHENPVRIIVVPRSNRVDCDQLMAHLFATTDLQKNFRVNLNIIGLNGKPQVKGLKQILT 355 Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422 EWL R + RR + R+ + R+ IL L++A+LNIDE+I IIR ++ PK ++SRF Sbjct: 356 EWLEFRLTTVTRRITHRLDKVLSRLHILDALMVAFLNIDEVIEIIRYKENPKTELMSRFQ 415 Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482 ++E Q DAIL+L+LR L KLEE +I SE D L E++K++ LL+S ++ I E+ Sbjct: 416 ISEIQADAILDLKLRHLAKLEEVKITSEQDELEVERDKLELLLSSDRRLKTLIKKELIHD 475 Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542 E + RR+ E S + KA +Q + E +TVV+S +GW+R K H +D A Sbjct: 476 GETYGDD-----RRSPLVERSES-KALTEQELAPVEAVTVVLSEKGWVRCAKGHDIDGHA 529 Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602 L +K GD + + + + + G+++ L S R GE I +L+ + + Sbjct: 530 LSYKSGDGFLCSAVGRSNQPAVFIGSTGRSFATDTHTLPSARSQGEPITTRFNLSPGEVM 589 Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGD 659 + D L+ S G F+ ++++ + GK L + + K+ +LV K + Sbjct: 590 EHLLLGDDEKFYLLASDAGYGFVGSYKDMVSRNKAGKALLSLPANAKVIKPQLVDKSKVE 649 Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRL-----QSYKDGGISDVICFKICEGLTWIDS 714 + + ++L+FS++ +P++S+GKG ++ + K+ + + E ++ Sbjct: 650 SILAITNEGRMLLFSMESLPQLSKGKGNKIIGIPTERAKNREELLIHLHVVPEDISVTLW 709 Query: 715 AG-RSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746 AG R +DL + G+RG G+ +P+G R Sbjct: 710 AGKRKLTLKPSDLEHYRGERGRRGAKLPRGLQR 742 >gi|309781097|ref|ZP_07675835.1| DNA topoisomerase IV, A subunit [Ralstonia sp. 5_7_47FAA] gi|308920163|gb|EFP65822.1| DNA topoisomerase IV, A subunit [Ralstonia sp. 5_7_47FAA] Length = 780 Score = 491 bits (1263), Expect = e-136, Method: Compositional matrix adjust. Identities = 267/703 (37%), Positives = 408/703 (58%), Gaps = 37/703 (5%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 E +A++L E YL YA+S +K RA+P++ DG KPV RRI+ AM EMGL A K Sbjct: 12 EPAEALTLGAYAERAYLDYAISVVKGRALPEVADGQKPVQRRILFAMHEMGLRSDAKPVK 71 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 SAR+VG+V+GK HPHGDQS YD+LVRLAQ F RYPLI GQGNFG+ DGD AAA RYTEA Sbjct: 72 SARVVGDVLGKFHPHGDQSAYDALVRLAQDFSLRYPLIDGQGNFGSRDGDGAAAMRYTEA 131 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 R+T ++ L+L+ +D+ VDF Y+ EP + P++ P +L NG SGIAVGMAT IPSH Sbjct: 132 RLTPISRLLLEELDQGTVDFIPNYDGSMEEPKLLPARLPFVLLNGASGIAVGMATEIPSH 191 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 N++E+ A +ALI + +++ L++Y+ GPDFP GG I+ S I + Y GRG +VRA Sbjct: 192 NLREVAAATVALIRDDKLTSTDLMQYMPGPDFPGGGQIISSAADIAQVYESGRGSLKVRA 251 Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAK------------------RIP 296 RW +EE+ RG W +VV E+P +++E+I EL K + Sbjct: 252 RWKIEELARGQWQLVVNELPPNTSSQKVLEEIEELTNPKVRTGKKSLSPDQLTMKQTMLG 311 Query: 297 LLEDIRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQV 354 LL+ +RDES +D VR+V PK++++D ++ + +E+ +N+ ++ P+ Sbjct: 312 LLDAVRDESGKDAPVRLVFEPKSKNIDQQEFANALLAHTSLESGAAINLVMIGTDGRPRQ 371 Query: 355 MPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK 414 L IL+EW+ +R + RR+ R+ ++ R+ IL+G + L ++++I IIR ++PK Sbjct: 372 KGLAEILREWITYRFATVTRRTRHRLGKVEDRIHILEGRQLVLLRVEDVIRIIRESEEPK 431 Query: 415 PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQ 474 ++ F+L++ Q + IL +RLR L +LE +I+ EL NL E+ ++D LL S + Sbjct: 432 AALIQVFNLSDRQAEDILEIRLRQLARLEAIKIEQELKNLREEQGELDVLLKSETMMRRR 491 Query: 475 IACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK 534 I +KEI + + G R TF + R A ++ + EP+TV++S +GW+R+ + Sbjct: 492 I------IKEIETDAKQYGDDRRTFIQEERRAAAEVK---VVDEPVTVIVSQKGWVRTRQ 542 Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLST-----DGKAYTLPAGNLLSGRGHGEA 589 H D + FK GD+L TTD +L+ T G+ Y++ NL GRG G Sbjct: 543 GHGHDATQFTFKAGDTLYDTFECRTTDALLIFGTRDDKGTGRVYSVAVANLPGGRGDGVP 602 Query: 590 IQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649 + LI+L I F + L++ + GN F+ + +++ + GK FL + ++ Sbjct: 603 LTTLIELAPGTHIAHTFAGHAEQSLVISTRGGNGFLAKVGDMVGRQKAGKAFLTLDEGDQ 662 Query: 650 MKLVVKVTGDH--VAVVGENRKLLIFSIDQIPEM-SRGKGVRL 689 V D VA + E +LL+F I ++ + S G+GV L Sbjct: 663 PNKPAPVPADAYGVACLSEGGRLLLFQISELKTLASGGRGVIL 705 >gi|332970389|gb|EGK09381.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Kingella kingae ATCC 23330] Length = 757 Score = 491 bits (1263), Expect = e-136, Method: Compositional matrix adjust. Identities = 268/707 (37%), Positives = 417/707 (58%), Gaps = 38/707 (5%) Query: 17 VKAVSLRFA--LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 V A +L A E YL YA+S +K RA+P ++DG KPV RRI+ AM +MGL GA K Sbjct: 3 VSADTLNLADYAERAYLEYAMSVVKGRALPAVQDGQKPVQRRILFAMKDMGLAHGAKPVK 62 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 SAR+VGE++GK HPHGD S Y+++VR+AQ F RYPLI G GNFG+ DGD AAA RYTEA Sbjct: 63 SARVVGEILGKYHPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEA 122 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 R+T +AEL+L +++ VDF Y+ EPV P++ P +L NG SGIAVGMAT IPSH Sbjct: 123 RLTPIAELLLSEINQGTVDFVPNYDGAFDEPVSLPARLPMVLLNGASGIAVGMATEIPSH 182 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 N+ E+ +AA+ L+ P + + L++Y PDF GG I+ S + + Y+ G+G RVRA Sbjct: 183 NLNEVTQAAIVLLKKPNLEVADLMKYCPAPDFAGGGHIITSAKDLQNIYQSGKGSVRVRA 242 Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAK------------------RIP 296 R+ ++++ RG W ++V+E+P ++++ +I E K + Sbjct: 243 RYEIDKMARGQWRVIVSELPPNTSAAKILAEIEEQTNPKPKAGKKQLNQDQLNTKKLMLD 302 Query: 297 LLEDIRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQV 354 L+E +RDES + VR+V PK+ ++P+ + ++ + +E +N+ ++ M P Sbjct: 303 LIEKVRDESDSEHPVRLVFEPKSSRVEPEHFINTLMAQTSLEGNVSINLVMMGMDNRPAQ 362 Query: 355 MPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK 414 L IL+EWL +R + RR R+ A+++R+ IL+G +IA+L+IDEII +IR D+PK Sbjct: 363 KNLKTILQEWLDYRVATVTRRLQHRLDAVEKRIHILEGRMIAFLHIDEIIKVIRESDEPK 422 Query: 415 PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQ 474 ++++F+LTE Q + IL +RLR L +LE +++SEL+ L E+ + LL + Sbjct: 423 ADLIAKFNLTEIQAEDILEIRLRQLARLEGIKLESELNELRDEQSSLQHLLADENDKKKL 482 Query: 475 IACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK 534 I +KE+ + + G R T E A++ATL Q + EPIT+++S +GWIR+ Sbjct: 483 I------IKEMQADAKQFGDERRTLVEA--AERATLTQTTAD-EPITLILSQKGWIRARA 533 Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLI 594 H VDLS + FKEGD L+ L T +++L T G++YT+ ++ GRG G + LI Sbjct: 534 GHDVDLSQIAFKEGDDLQQVLETRTVQPVIVLDTLGRSYTIDPADVPKGRGDGVPVGSLI 593 Query: 595 DLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS------EE 648 D+ ++T L+ +S G FI + ++ + + GKT + + S E Sbjct: 594 DIQAAASVLTMIAGSVDEHYLLANSGGYGFICKLEDLHSRLKAGKTIMMLESGEVALLPE 653 Query: 649 KMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKD 694 K+ L + D + + +LL F I ++ M++G+G++L S +D Sbjct: 654 KVYLSSLINPDCKIVLATAQNRLLAFPIGEMKIMAKGRGLQLISLQD 700 >gi|323491054|ref|ZP_08096246.1| DNA topoisomerase IV subunit A [Vibrio brasiliensis LMG 20546] gi|323314718|gb|EGA67790.1| DNA topoisomerase IV subunit A [Vibrio brasiliensis LMG 20546] Length = 760 Score = 490 bits (1262), Expect = e-136, Method: Compositional matrix adjust. Identities = 261/687 (37%), Positives = 422/687 (61%), Gaps = 17/687 (2%) Query: 9 SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68 S + + V+ + +R E+ YL Y++ I +RA+P + DG KPV RRII+AMSE+GL Sbjct: 2 STEITYDGVEQLPMRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61 Query: 69 GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAA 127 A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S A Sbjct: 62 AAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFA 121 Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187 A RYTEA++++ AE++L + + V+++ ++ EP + P++ P++L NG +GIAVGM Sbjct: 122 AMRYTEAKLSKFAEVLLGELGQGTVEWQPNFDGTMKEPQMLPARLPHILLNGVTGIAVGM 181 Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247 AT IP HNV+E+ +A + LIDNP+ + ++ ++ GPD+PT I+ + + + YR GR Sbjct: 182 ATDIPPHNVREVADATIHLIDNPKSELPDIMNFVQGPDYPTEAEIISPKADLEKIYRTGR 241 Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307 G ++RA W E IV+T +P+QV ++L+E+IA + AK++P+++D+RDES Sbjct: 242 GSIKMRAVWHKE-----GNEIVITSLPHQVSGAKLLEQIANQMRAKKLPMVDDLRDESDH 296 Query: 308 D--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365 + RIV+ P++ +D D LM +F +D+E + +N+N++ + PQV L IL EW+ Sbjct: 297 ENPTRIVVVPRSNRVDCDQLMNHLFASTDLEKNYRVNLNMIGLDNRPQVKGLVQILSEWI 356 Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425 RR + RR R+ + R+ IL+GLL+AYLN+DE+I IIR ED PK V+++RF +T+ Sbjct: 357 EFRRATVRRRLQHRLDKVLARLHILEGLLVAYLNLDEVIEIIRTEDDPKAVLMARFGITD 416 Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485 Q DAIL+ +LR L KLEE +I+ E D L E+EK++ LL S ++ + EI+ E Sbjct: 417 IQADAILDTKLRHLAKLEEMKIRGEQDELEKEREKLELLLGSERRLNTLLKKEIKADAEK 476 Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545 + RR+ E + A KA ++ ++ EPITVV+S +GWIR K H VD +L++ Sbjct: 477 YGDD-----RRSPMVERAEA-KALTERDLVPSEPITVVLSEKGWIRHAKGHDVDAGSLNY 530 Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605 K GD+ + + + L DG++Y+L + +L S R GE I +++ +I Sbjct: 531 KSGDNYLAHSRGKSNQQAVFLGNDGRSYSLESHSLPSARSQGEPITGRLNIAAGTNIRHV 590 Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVA 662 + + LV S G F+ + S++++ R GK + + ++ K V + D + Sbjct: 591 VMGEEEQLWLVGSDAGYGFVCKGSDLLSKNRSGKALVTLPQNSEVLLPKAVGNLENDEIL 650 Query: 663 VVGENRKLLIFSIDQIPEMSRGKGVRL 689 + ++L+F I +P++ +GKG ++ Sbjct: 651 AITNQGRMLLFPIKDLPQLGKGKGNKI 677 >gi|241760829|ref|ZP_04758920.1| DNA topoisomerase IV, A subunit [Neisseria flavescens SK114] gi|241318726|gb|EER55278.1| DNA topoisomerase IV, A subunit [Neisseria flavescens SK114] Length = 767 Score = 490 bits (1262), Expect = e-136, Method: Compositional matrix adjust. Identities = 275/741 (37%), Positives = 413/741 (55%), Gaps = 40/741 (5%) Query: 27 EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86 E YL YA+S +K RA+P++ DG KPV RRI+ AM +MGL GA KSAR+VGE++GK Sbjct: 25 ERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGEILGKY 84 Query: 87 HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQG 146 HPHGD S Y+++VR+AQ F RYPLI G GNFG+ DGD AAA RYTEAR+T +AEL+L Sbjct: 85 HPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAELLLSE 144 Query: 147 VDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALAL 206 +++ VDF Y+ EP+ P++ P +L NG SGIAVGMAT IPSHN+ E+ +AA+AL Sbjct: 145 INQGTVDFVPNYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIPSHNLNEVTQAAIAL 204 Query: 207 IDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSW 266 + P + L++YI PDF GG I+ + + Y G+G RVRAR+ +E++ RG W Sbjct: 205 LKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETGKGSVRVRARYEIEKLARGQW 264 Query: 267 CIVVTEIPYQVQKSRLIEKIAELIIAK------------------RIPLLEDIRDES--A 306 ++VTE+P ++++ +I E K + L++ +RDES Sbjct: 265 RVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDQLNTKKLMLDLIDRVRDESDGE 324 Query: 307 EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366 VR+V PK+ +D D + ++ + +E +N+ ++ + P L IL+EWL Sbjct: 325 HPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMMGLDNRPAQKNLKTILQEWLD 384 Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426 R + RR FR+ +++R+ IL+G L +L+IDE+I +IR D PK +++ F LTE Sbjct: 385 FRVVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKVIRESDDPKADLMAAFGLTEI 444 Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486 Q + IL +RLR L +LE ++++ EL+ L E+ +++ LL ++ I +KE+ Sbjct: 445 QAEDILEIRLRQLARLEGFKLEKELNELREEQGRLNILLGDENEKRKLI------IKEMQ 498 Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546 + G R T E A +A L Q + EPIT+++S +GWIRS H++DLS FK Sbjct: 499 ADMKQFGDARRTLVE--EAGRAVLTQTTAD-EPITLILSEKGWIRSRAGHNLDLSQTAFK 555 Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606 EGD LK L T +++L + G+ YTL A + GRG G + LI+L + V Sbjct: 556 EGDRLKQTLEGRTVLPVVILDSLGRTYTLDAAEIPGGRGDGVPVSSLIELQNGAKPVAML 615 Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD------- 659 L+ S G FI + ++++ + GK + V S E + V V Sbjct: 616 TGQPEQHYLLSGSGGYGFITKLADMVGRVKAGKVVMTVDSGETVLPPVAVYASSLINPDC 675 Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719 V + N +LL FSI ++ M +G+G++L S +G + I T + R Sbjct: 676 KVVLASSNHRLLAFSIGELKVMPKGRGLQLMSLAEGASLEHIMVTTSPEFTVVSVGRRGA 735 Query: 720 NRSEN----DLLGWLGKRGGV 736 E D+ G GK+G V Sbjct: 736 EHQEKLRIADIDGKRGKKGKV 756 >gi|332304966|ref|YP_004432817.1| DNA topoisomerase IV, A subunit [Glaciecola agarilytica 4H-3-7+YE-5] gi|332172295|gb|AEE21549.1| DNA topoisomerase IV, A subunit [Glaciecola agarilytica 4H-3-7+YE-5] Length = 770 Score = 490 bits (1261), Expect = e-136, Method: Compositional matrix adjust. Identities = 265/745 (35%), Positives = 439/745 (58%), Gaps = 23/745 (3%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 ++ ++ + +R EE YL Y++ I +RA+P + DG KPV RRI++AMSE+GL A +K Sbjct: 9 KDGIEQLPMRQFTEESYLNYSMYVIMDRALPHIGDGLKPVQRRIVYAMSELGLSNNAKYK 68 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYT 132 KSAR VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S AA RYT Sbjct: 69 KSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYT 128 Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192 E+R+++ +E++L + + VD++ ++ EP + P++ P++L NG +GIAVGMAT IP Sbjct: 129 ESRLSKFSEVLLTELGQGTVDWQPNFDGTLDEPKILPARLPHILLNGITGIAVGMATDIP 188 Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252 HNV+E+ A L+DN + + +LL ++ GPD+PT I+ + I + Y GRG ++ Sbjct: 189 PHNVREVANACAHLLDNSKAELHELLAFVQGPDYPTDAEIITPKSDIRKMYETGRGSIKM 248 Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VR 310 RA + EE G I++T +P+Q +++E+IA + AK++P++ D+RDES + R Sbjct: 249 RAVY-YEEAGD----IIITALPHQASGGKILEQIAAQMQAKKLPMVSDLRDESDHENPTR 303 Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370 +++ P++ +D + LM+ +F +D+E + +N+N++ + PQV L IL EWL R++ Sbjct: 304 LLITPRSNRVDVEQLMQHLFATTDLEKNYRVNINMIGLDGRPQVKDLRMILSEWLVFRKD 363 Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDA 430 + RR FR+ + R+ IL+GL+IA+LNIDE+I IIR E+KPK V++ FSL++ Q +A Sbjct: 364 TVVRRLQFRLDKVLARLHILEGLMIAFLNIDEVIRIIRYEEKPKQVLMDTFSLSDIQAEA 423 Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490 IL L+LR L KLEE +IK E D L E++++ +L S ++ I EI E++ Sbjct: 424 ILELKLRHLAKLEEMKIKGEQDALAKERDELQLILGSDRRLKTLIKKEILAAAELYGDD- 482 Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDS 550 RR+ E S + KA ++ +I EP+TVV+S +GW R K H VD+ L +K GD Sbjct: 483 ----RRSPIIERSES-KALTEKELIPSEPVTVVLSEKGWARCAKGHDVDVVGLSYKAGDK 537 Query: 551 LKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDS 610 + + + + + T G+A++ A L S R GE I + + + + Sbjct: 538 YLASSKGRSNQQAVFMDTSGRAFSCDAHVLPSARSQGEPITGRFSIVSGETVEHVVMGQD 597 Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVAVVGEN 667 + L+ S G F+ + +++I+ R GK +L + K+ + V ++ D + Sbjct: 598 EQQYLIASDAGYGFVGKFADMISKNRAGKAYLSLPKSAKVISPQPVHDLSSDWCLAISNE 657 Query: 668 RKLLIFSIDQIPEMSRGKG---VRLQSYKDGGISDV--ICFKICEGLTWIDSAG-RSYNR 721 ++L+F + +P + +GKG + + S K + + + +G AG R Sbjct: 658 GRMLMFPLRDLPSLGKGKGNKIISIPSAKSQAREEFVKVLAVVPQGANVKVLAGKRGMTL 717 Query: 722 SENDLLGWLGKRGGVGSLVPKGFPR 746 + +DL + G+RG G+ +P+G R Sbjct: 718 TADDLTHYQGERGRRGNKLPRGLQR 742 >gi|261379296|ref|ZP_05983869.1| DNA topoisomerase IV, A subunit [Neisseria subflava NJ9703] gi|284797734|gb|EFC53081.1| DNA topoisomerase IV, A subunit [Neisseria subflava NJ9703] Length = 767 Score = 489 bits (1260), Expect = e-136, Method: Compositional matrix adjust. Identities = 275/741 (37%), Positives = 413/741 (55%), Gaps = 40/741 (5%) Query: 27 EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86 E YL YA+S +K RA+P++ DG KPV RRI+ AM +MGL GA KSAR+VGE++GK Sbjct: 25 ERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGEILGKY 84 Query: 87 HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQG 146 HPHGD S Y+++VR+AQ F RYPLI G GNFG+ DGD AAA RYTEAR+T +AEL+L Sbjct: 85 HPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAELLLSE 144 Query: 147 VDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALAL 206 +++ VDF Y+ EPV P++ P +L NG SGIAVGMAT IPSHN+ E+ +AA+AL Sbjct: 145 INQGTVDFVPNYDGAFDEPVHLPARLPMVLLNGASGIAVGMATEIPSHNLNEVTQAAIAL 204 Query: 207 IDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSW 266 + P + L++YI PDF GG I+ + + Y G+G RVRAR+ +E++ RG W Sbjct: 205 LKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETGKGSVRVRARYEIEKLARGQW 264 Query: 267 CIVVTEIPYQVQKSRLIEKIAELIIAK------------------RIPLLEDIRDES--A 306 ++VTE+P ++++ +I E K + L++ +RDES Sbjct: 265 RVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDQLNTKKLMLDLIDRVRDESDGE 324 Query: 307 EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366 VR+V PK+ +D D + ++ + +E +N+ ++ + P L IL+EWL Sbjct: 325 HPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMMGLDNRPAQKNLKTILQEWLD 384 Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426 R + RR FR+ +++R+ IL+G L +L+IDE+I +IR D PK +++ F LTE Sbjct: 385 FRVVTVTRRLKFRLSQVEKRLHILEGRLKVFLHIDEVIKVIRESDDPKADLMAAFGLTEI 444 Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486 Q + IL +RLR L +LE ++++ EL+ L E+ +++ LL ++ I +KE+ Sbjct: 445 QAEDILEIRLRQLARLEGFKLEKELNELREEQGRLNILLGDENEKRKLI------IKEMQ 498 Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546 + G R T E A +A L Q + EPIT+++S +GWIRS H++DLS FK Sbjct: 499 ADMKQFGDARRTLVE--EAGRAVLTQTTAD-EPITLILSEKGWIRSRAGHNLDLSQTAFK 555 Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606 EGD LK + T +++L + G+ YTL A + GRG G + LI+L + V Sbjct: 556 EGDRLKQTIEGRTVLPVVILDSLGRTYTLDAAEIPGGRGDGVPVSSLIELQNGAKPVAML 615 Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD------- 659 L+ S G FI + +++I + GK + V S E + V V Sbjct: 616 TGQPEQHYLLSGSGGYGFITKLADMIGRVKAGKVIMTVDSGETVLPPVAVYASSLINPDC 675 Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719 V + + +LL FSI ++ M +G+G++L S +G + I T + R Sbjct: 676 KVVLASSDHRLLAFSIGELKVMPKGRGLQLMSLAEGASLEHIMVTTSPEFTVVSVGRRGA 735 Query: 720 NRSEN----DLLGWLGKRGGV 736 E D+ G GK+G V Sbjct: 736 EHQEKLRIADIDGKRGKKGKV 756 >gi|297539209|ref|YP_003674978.1| DNA topoisomerase IV subunit A [Methylotenera sp. 301] gi|297258556|gb|ADI30401.1| DNA topoisomerase IV, A subunit [Methylotenera sp. 301] Length = 761 Score = 489 bits (1260), Expect = e-136, Method: Compositional matrix adjust. Identities = 267/716 (37%), Positives = 406/716 (56%), Gaps = 36/716 (5%) Query: 1 MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60 M + N+N EEN AV + EE YLAYA+S +K RA+P + DG KPV RRI+ A Sbjct: 1 MDTSMLENNN---EEN--AVPIGEYAEEAYLAYAVSVVKGRALPSVEDGQKPVQRRILFA 55 Query: 61 MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120 M EMGL G KSAR+VG V+G HPHGD S Y++ VRLAQ F RYPLI GQGNFG+ Sbjct: 56 MKEMGLIAGVKPVKSARVVGNVLGMYHPHGDSSAYEAAVRLAQDFTLRYPLIDGQGNFGS 115 Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180 DGD AAA RYTE R++ +A+L+L +D VDF+ Y+ EPV+ P++ P +L NG Sbjct: 116 RDGDGAAAMRYTEMRLSPIADLLLSEIDRGTVDFQSNYDGAFQEPVLLPARLPMMLLNGA 175 Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240 SGIAVGMAT + HN++EI A L ++DNP+ + ++Y+ GPDFP GG ++ I+ Sbjct: 176 SGIAVGMATEMIPHNMREIANAVLHVMDNPDATTADFMQYVPGPDFPGGGQLITQTADIL 235 Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQV------------------QKSRL 282 +Y GRG R+RARW VE + RG W I++ E+P+ V + + Sbjct: 236 STYETGRGSLRLRARWIVEPMARGQWRIIIHELPHGVSVETIQDEILAISNPKPKKDKKT 295 Query: 283 IEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLN 342 I++ L+ + +++ ++ E +DVR+++ PK + D LM + + + ME P+N Sbjct: 296 IDQDQLLVKQSALSMIDTVKSEGKKDVRLIIEPKTSKVSSDELMAFLLLHTSMEVSCPVN 355 Query: 343 MNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDE 402 M ++ P + ILKEW+A R V+ RR F + I++R+ IL+G +IA+L+IDE Sbjct: 356 MVMIGTDGRPAQKGMIAILKEWIAFRLNVVRRRCQFDLDKINKRIHILEGRMIAFLHIDE 415 Query: 403 IIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKID 462 +I +IRN D+PK +++ F L+E Q + IL +RLR L +LE ++I+ EL +L E + + Sbjct: 416 VIRVIRNSDEPKTDLIAAFQLSEIQAEDILEIRLRQLARLEGFKIEKELKDLREEADGLQ 475 Query: 463 SLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITV 522 ++L S + A EI++ E + + RRT V R Q+A + EP+T+ Sbjct: 476 NILGSDNKLRKLTAKEIKQDAEKYGDN-----RRTLIEPVERVQGG--QKAFVVDEPVTI 528 Query: 523 VISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582 +IS GWIR+ + H V+ ++ +K GD + T I+LL T+G+ Y A + Sbjct: 529 LISKNGWIRARQGHGVERESIVWKSGDGEFAVIETRTVLPIVLLDTNGRCYAFDASTVPG 588 Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFL 642 G+G G + +I++ + + A + L +S F+ ++A + GK F+ Sbjct: 589 GKGDGIPLSSIIEVQNGAKLAHALSGKDDDRYLFATSNSYGFVAPLKGLVARPKAGKAFM 648 Query: 643 KVSSEEKMKLVVKVTGD---HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKD 694 K E+ ++ + D HVAV K L+F I ++ E GKGVR+ D Sbjct: 649 K--PEDGALILPPIKLDERTHVAVTSSENKFLVFPISEVNEYPNGGKGVRMMDIPD 702 >gi|187927926|ref|YP_001898413.1| DNA topoisomerase IV subunit A [Ralstonia pickettii 12J] gi|187724816|gb|ACD25981.1| DNA topoisomerase IV, A subunit [Ralstonia pickettii 12J] Length = 780 Score = 489 bits (1260), Expect = e-136, Method: Compositional matrix adjust. Identities = 267/703 (37%), Positives = 407/703 (57%), Gaps = 37/703 (5%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 E +A++L E YL YA+S +K RA+P++ DG KPV RRI+ AM EMGL A K Sbjct: 12 EPAEALTLGAYAERAYLDYAISVVKGRALPEVADGQKPVQRRILFAMHEMGLRSDAKPVK 71 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 SAR+VG+V+GK HPHGDQS YD+LVRLAQ F RYPLI GQGNFG+ DGD AAA RYTEA Sbjct: 72 SARVVGDVLGKFHPHGDQSAYDALVRLAQDFSLRYPLIDGQGNFGSRDGDGAAAMRYTEA 131 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 R+T ++ L+L+ +D+ VDF Y+ EP + P++ P +L NG SGIAVGMAT IPSH Sbjct: 132 RLTPISRLLLEELDQGTVDFIPNYDGSMEEPKLLPARLPFVLLNGASGIAVGMATEIPSH 191 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 N++E+ A +ALI + +++ L++Y+ GPDFP GG I+ S I + Y GRG +VRA Sbjct: 192 NLREVAAATVALIRDDKLTSTDLMQYMPGPDFPGGGQIISSAADIAQVYESGRGSLKVRA 251 Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAK------------------RIP 296 RW +EE+ RG W +VV E+P +++E+I EL K + Sbjct: 252 RWKIEELARGQWQLVVNELPPNTSSQKVLEEIEELTNPKVRTGKKSLSPDQLTMKQTMLG 311 Query: 297 LLEDIRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQV 354 LL+ +RDES +D VR+V PK++++D ++ + +E+ +N+ ++ P+ Sbjct: 312 LLDAVRDESGKDAPVRLVFEPKSKNIDQQEFANALLAHTSLESGAAINLVMIGTDGRPRQ 371 Query: 355 MPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK 414 L IL+EW+ +R + RR+ R+ ++ R+ IL+G + L I+++I IIR + PK Sbjct: 372 KGLAEILREWIVYRFATVTRRTRHRLGKVEDRIHILEGRQLVLLRIEDVIRIIRESEDPK 431 Query: 415 PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQ 474 ++ F+L++ Q + IL +RLR L +LE +I+ EL NL E+ ++D LL S + Sbjct: 432 AALIQVFNLSDRQAEDILEIRLRQLARLEAIKIEQELKNLREEQGELDVLLKSETMMRRR 491 Query: 475 IACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK 534 I +KEI + + G R TF + R A ++ + EP+TV++S +GW+R+ + Sbjct: 492 I------IKEIETDAKQYGDDRRTFIQEERRAAAEVK---VVDEPVTVIVSQKGWVRTRQ 542 Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLST-----DGKAYTLPAGNLLSGRGHGEA 589 H D + FK GD+L TTD +L+ T G+ Y++ NL GRG G Sbjct: 543 GHGHDATQFTFKAGDTLYDTFECRTTDALLIFGTRDDKGTGRVYSVAVANLPGGRGDGVP 602 Query: 590 IQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649 + LI+L I F + L++ + GN F+ + +++ + GK FL + ++ Sbjct: 603 LTTLIELAPGTHIAHTFAGHAEQNLVISTRGGNGFLAKVGDMVGRQKAGKAFLTLDEGDQ 662 Query: 650 MKLVVKVTGDH--VAVVGENRKLLIFSIDQIPEM-SRGKGVRL 689 V D VA + E ++L+F I ++ + S G+GV L Sbjct: 663 PNKPAPVPADAYGVACLSEGGRMLLFQISELKTLASGGRGVIL 705 >gi|121607398|ref|YP_995205.1| DNA topoisomerase IV subunit A [Verminephrobacter eiseniae EF01-2] gi|121552038|gb|ABM56187.1| DNA topoisomerase IV subunit A [Verminephrobacter eiseniae EF01-2] Length = 785 Score = 489 bits (1259), Expect = e-136, Method: Compositional matrix adjust. Identities = 267/721 (37%), Positives = 402/721 (55%), Gaps = 46/721 (6%) Query: 1 MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60 M +IS+ +T + + + L + YL YALS +K RA+PD+ DG KPV RRI++A Sbjct: 1 MSDPSISDFSTAGNDEGETLGLADYAQRAYLEYALSVVKGRALPDVCDGLKPVQRRILYA 60 Query: 61 MSEMGLDFGAAFK-------KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLIS 113 M MGL +G A KSAR+VG+V+G+ HPHGDQS YD+LVR+AQ F QRYPLI Sbjct: 61 MGRMGLGYGGAAGNTAAKPVKSARVVGDVLGRFHPHGDQSAYDALVRMAQDFAQRYPLID 120 Query: 114 GQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFP 173 GQGNFG+ DGDSAAA RYTEAR++++A L+L +DE VDF Y+ EP P++ P Sbjct: 121 GQGNFGSRDGDSAAAMRYTEARLSRIARLLLDEIDEGTVDFMPNYDGSTEEPRQLPARLP 180 Query: 174 NLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIV 233 L NG SGIAVG+AT IPSHN+ EI A +ALI P ++ E+LL + GPD+P GG I+ Sbjct: 181 FALLNGASGIAVGLATEIPSHNLGEIAAACIALIKTPALTQEELLALVPGPDYPGGGQII 240 Query: 234 ESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAEL---- 289 S I +Y+ GRG ++R+RW +EE+ RG W +VV E+P V R++E+I EL Sbjct: 241 SSAAEIAGAYQTGRGSLKLRSRWKIEELARGQWQLVVNELPPGVSTQRVLEEIEELTNPK 300 Query: 290 --------------IIAKRIPLLEDIRDESAED--VRIVLFPKNRSLDPDLLMESIFMLS 333 + A + +L+ +RDES +D VR+V PK L+ ++ + Sbjct: 301 IKVGKKALSQEQTQLKASLLAVLDLVRDESGKDAPVRLVFEPKTGKTPQQELITALLAHT 360 Query: 334 DMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGL 393 +ET P+N+ ++ + P L +L+EW+A R+ + RRS + + R+ IL+G Sbjct: 361 SLETSAPINLTLVGLDGRPVQKSLRQMLQEWIAFRQTTITRRSQHHLNKVLERIHILEGR 420 Query: 394 LIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453 I L++DE+IAIIR D+PK +++R+SL++ Q + IL +RLR L +LE +I EL Sbjct: 421 QIVLLHLDEVIAIIRQADEPKAALMARWSLSDRQAEDILEIRLRQLARLEALRIGQELKE 480 Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513 L + K++ +LN + A +KEI + + R T + A+K + + Sbjct: 481 LRDRQGKLEDILN------HPGALRRTLIKEIETDAKTFADPRRTLIQ---AEKKAVIEV 531 Query: 514 MIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573 + EP+TVV+S +GW+R H + ++ FK GD L T D +L +G+ Y Sbjct: 532 RVPDEPVTVVVSQKGWVRVRSGHGHEAASFAFKAGDGLYGTFECRTVDTLLAFGNNGRVY 591 Query: 574 TLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIA 633 ++ L RG G+ + LI+L ++ F + LL+ +S G F+ +I+ Sbjct: 592 SVAVSLLPGARGDGQPVTTLIELEAGTQVLHYFAGPAQATLLLSNSGGYGFLATVEHMIS 651 Query: 634 NTRKGKTFLKVSSEEKMKLVVKVTGD----------HVAVVGENRKLLIFSIDQIPEMSR 683 + GKTFL ++ E G HVA ++L F + ++ M+ Sbjct: 652 RQKGGKTFLTLAGGETPCPPSHAFGSTGSAPVLPATHVACASTGGRILTFELGELKTMAN 711 Query: 684 G 684 G Sbjct: 712 G 712 >gi|241662515|ref|YP_002980875.1| DNA topoisomerase IV subunit A [Ralstonia pickettii 12D] gi|240864542|gb|ACS62203.1| DNA topoisomerase IV, A subunit [Ralstonia pickettii 12D] Length = 780 Score = 489 bits (1259), Expect = e-136, Method: Compositional matrix adjust. Identities = 268/703 (38%), Positives = 407/703 (57%), Gaps = 37/703 (5%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 E +A++L E YL YA+S +K RA+P++ DG KPV RRI+ AM EMGL A K Sbjct: 12 EPAEALTLGAYAERAYLDYAISVVKGRALPEVADGQKPVQRRILFAMHEMGLRSDAKPVK 71 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 SAR+VG+V+GK HPHGDQS YD+LVRLAQ F RYPLI GQGNFG+ DGD AAA RYTEA Sbjct: 72 SARVVGDVLGKFHPHGDQSAYDALVRLAQDFSLRYPLIDGQGNFGSRDGDGAAAMRYTEA 131 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 R+T ++ L+L+ +D+ VDF Y+ EP + P++ P +L NG SGIAVGMAT IPSH Sbjct: 132 RLTPISRLLLEELDQGTVDFIPNYDGSMEEPKLLPARLPFVLLNGASGIAVGMATEIPSH 191 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 N++E+ A +ALI + +++ L++Y+ GPDFP GG I+ S I + Y GRG +VRA Sbjct: 192 NLREVAAATVALIRDDKLTSTDLMQYMPGPDFPGGGQIISSAADIAQVYESGRGSLKVRA 251 Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAK------------------RIP 296 RW +EE+ RG W +VV E+P +++E+I EL K + Sbjct: 252 RWKIEELARGQWQLVVNELPPNTSSQKVLEEIEELTNPKVRTGKKSLSPDQLTMKQTMLG 311 Query: 297 LLEDIRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQV 354 LL+ +RDES +D VR+V PK++++D ++ + +E+ +N+ ++ P+ Sbjct: 312 LLDAVRDESGKDAPVRLVFEPKSKNIDQQEFANALLAHTSLESGAAINLVMIGTDGRPRQ 371 Query: 355 MPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK 414 L IL+EW+ +R + RR+ R+ ++ R+ IL+G + L I+++I IIR ++PK Sbjct: 372 KGLAEILREWITYRFATVTRRTRHRLGKVEDRIHILEGRQLVLLRIEDVIRIIRESEEPK 431 Query: 415 PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQ 474 ++ F+L++ Q + IL +RLR L +LE +I+ EL NL E+ ++D LL S + Sbjct: 432 AALIQVFNLSDRQAEDILEIRLRQLARLEAIKIEQELKNLREEQGELDVLLKSETMMRRR 491 Query: 475 IACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK 534 I +KEI + + G R T + R A ++ I EP+TV++S +GW+R+ + Sbjct: 492 I------IKEIETDAKQYGDDRRTLIQEERRAAAEVK---IVDEPVTVIVSQKGWVRTRQ 542 Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLST-----DGKAYTLPAGNLLSGRGHGEA 589 H D + FK GD+L TTD +L+ T G+ Y++ NL GRG G Sbjct: 543 GHGHDATQFTFKAGDTLYDTFECRTTDALLIFGTRDDKGTGRVYSVAVANLPGGRGDGVP 602 Query: 590 IQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649 + LI+L I F + L++ + GN F+ + +++ + GK FL + ++ Sbjct: 603 LTTLIELAPGTHIAHTFAGHAEQNLVISTRGGNGFLAKVGDMVGRQKAGKAFLTLDEGDQ 662 Query: 650 MKLVVKVTGDH--VAVVGENRKLLIFSIDQIPEM-SRGKGVRL 689 V D VA + E +LL+F I ++ + S G+GV L Sbjct: 663 PNKPAPVPADAYGVACLSEGGRLLLFQISELKTLASGGRGVIL 705 >gi|262370201|ref|ZP_06063528.1| DNA topoisomerase IV [Acinetobacter johnsonii SH046] gi|262315240|gb|EEY96280.1| DNA topoisomerase IV [Acinetobacter johnsonii SH046] Length = 739 Score = 489 bits (1258), Expect = e-136, Method: Compositional matrix adjust. Identities = 272/733 (37%), Positives = 435/733 (59%), Gaps = 23/733 (3%) Query: 27 EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86 E+ YL YA+ I +RA+P + DG KPV RRI++AMSE+GL KKSAR VG+V+GK Sbjct: 19 EQAYLNYAMYVIMDRALPHISDGLKPVQRRIVYAMSELGLKHSGKPKKSARTVGDVLGKY 78 Query: 87 HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQVAELILQ 145 HPHGD + Y+++V +AQPF RYP I GQGN+G+ D S AA RYTEA+++Q +E++L Sbjct: 79 HPHGDSACYEAMVLMAQPFSYRYPFIEGQGNWGSPDDPKSFAAMRYTEAKLSQYSEVLLS 138 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 + + D++D ++ EPV P++ PN+L NGT+GIAVGMAT IP HN++E+ + +A Sbjct: 139 ELGQGTCDWQDNFDGSMKEPVTLPARIPNILLNGTTGIAVGMATDIPPHNLREVVKGTIA 198 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265 LI NP + EK+ EYI PD PT I+ E +++ GRG +R+R+ + +E+ Sbjct: 199 LIRNPNLGDEKVAEYIPAPDLPTKAEIITPPEELLKIQSTGRGSYRMRSVYRIEKNE--- 255 Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFPKNRSLDPD 323 IV+T++PYQV S++I +IA+ + AK++PL+ D+RDES R+V+ ++ +D + Sbjct: 256 --IVITDLPYQVSGSKVISQIADQMQAKKLPLVSDVRDESDHQNPTRLVIVLRSNRIDAE 313 Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383 +M +F +D+E+ + +NMN++ PQV + IL EW+ R+E + RR + + I Sbjct: 314 AVMSHLFATTDLESSYRVNMNMIGADGRPQVKSIRRILLEWIEIRKETVTRRLQYHLNKI 373 Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLE 443 ++R+ IL GL+IAYLNIDE+I IIR E++PK ++SRF++ + Q +AIL L+LR L +LE Sbjct: 374 EKRLHILGGLIIAYLNIDEVIRIIREEEQPKAELMSRFNIDDIQAEAILELKLRHLARLE 433 Query: 444 EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVS 503 E +++ E + L A+ I L + + + A I E+K+ K D RR+ V Sbjct: 434 EMEMRREQEELEAKAALIREQLANPE---SLKALIINELKDDAKKYGD--DRRSPI--VH 486 Query: 504 RADKATL-QQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDR 562 RA+ + +Q + +P+TVV+S GWIRS K H VD L+F+ GD + R Sbjct: 487 RAEATAMSEQDFMPADPVTVVLSEAGWIRSAKGHEVDAENLNFRAGDQYLSHAQGKSNQR 546 Query: 563 ILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGN 622 + +L G++Y L +L S RG GE + + F+ D +++ +SSKG Sbjct: 547 VYVLDESGRSYALAINSLPSARGLGEPLSSKLSPASGVGFKQVFIADDETEVMALSSKGY 606 Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEK-MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEM 681 F + ++ N + GK FL + + M L H+A++ +LLI + ++P + Sbjct: 607 GFKTQAKQLDTNAKAGKAFLTLPEKATVMPLTSVDQATHLALLTSTGRLLILELSELPVL 666 Query: 682 SRGKGVRLQSYKDGGISDVICFK---ICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGS 738 ++GKG +L ++ D I F + + + + + +DL ++GKR G Sbjct: 667 NKGKGNKLIQLEE---KDQIVFMTRLTLDEILQVVAGQQQLKLKGDDLQKYIGKRASKGQ 723 Query: 739 LVPKGFPRSGKFL 751 L+P+G+ ++ K L Sbjct: 724 LLPRGYQKANKLL 736 >gi|124267742|ref|YP_001021746.1| DNA topoisomerase IV subunit A [Methylibium petroleiphilum PM1] gi|124260517|gb|ABM95511.1| DNA topoisomerase IV subunit A [Methylibium petroleiphilum PM1] Length = 769 Score = 489 bits (1258), Expect = e-136, Method: Compositional matrix adjust. Identities = 263/703 (37%), Positives = 406/703 (57%), Gaps = 37/703 (5%) Query: 10 NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF- 68 N +N A++L E YL YALS +K RA+PD+ DG KPV RRI++AM +GL F Sbjct: 7 NAAGGDNGDAITLAHYAERAYLEYALSVVKGRALPDVCDGQKPVQRRILYAMERLGLAFT 66 Query: 69 ---GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125 G KSAR+VG+V+G+ HPHGD + YD+LVR+AQ F QRYPLI GQGNFG+ DGD Sbjct: 67 TAGGPKAMKSARVVGDVLGRYHPHGDTAAYDALVRMAQDFSQRYPLIDGQGNFGSRDGDG 126 Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185 AAA RYTEAR+ + L+L +DE VDF Y+ EP P++ P +L NG SGIAV Sbjct: 127 AAAMRYTEARLAPITRLLLDEIDEGTVDFIPNYDGSTQEPKQLPARLPFVLLNGASGIAV 186 Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245 G+AT IPSHN++E+ AA+ALI ++S ++L + GPD+P GG I+ + I ++YR Sbjct: 187 GLATEIPSHNLREVAAAAVALIKQEKLSDDELFALLPGPDYPGGGQIISAEADIRDAYRS 246 Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAK------------ 293 GRG +VRA+W +E++ RG W +VVTE+P +++E+I EL K Sbjct: 247 GRGSLKVRAKWKIEDLARGQWNLVVTELPPGTSAQKVLEEIEELTNPKVKAGKKALSAEQ 306 Query: 294 ------RIPLLEDIRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNV 345 + +L+ +RDES ++ VR+V PK+R+++ L+ + + +ET +N+ + Sbjct: 307 TQLKTTVLAVLDAVRDESGKEAAVRLVFEPKSRTVEQQELINVLLAHTSLETSASINLTM 366 Query: 346 LSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIA 405 + P + +L EW+ R E + RR+ R+ + R+ IL+G + LNIDE+I Sbjct: 367 VGADGRPTQKSMRQMLTEWIGFRLETVQRRTRHRLGKVLDRIHILEGRQLVLLNIDEVIR 426 Query: 406 IIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLL 465 IIRN D+PKP ++ RF L++ Q + IL +RLR L +LE +I+ EL +L E+ +++ +L Sbjct: 427 IIRNADEPKPALIERFRLSDRQAEDILEIRLRQLARLEAIKIEQELKSLREEQGRLEEIL 486 Query: 466 NSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVIS 525 NS A + VKEI + + G R T + A+K + + + EP+TVVIS Sbjct: 487 NS------PAALKRTVVKEIEADAKTHGDERRTLIQ---AEKKAVAEVKVVDEPVTVVIS 537 Query: 526 NRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRG 585 ++GW+R+ + H D +A FK GD+L T D +L+ ++G+ Y++ L RG Sbjct: 538 SKGWVRARQGHGHDAAAFAFKAGDTLYGTFECRTVDTLLVFGSNGRVYSVAVSGLPGARG 597 Query: 586 HGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS 645 G+ I +I+L F + LL+ ++ G + + ++ + R GK FL ++ Sbjct: 598 DGQPITSMIELESGTQPQHYFAGPADATLLLANTGGYGLLAKAGDLQSRQRGGKGFLTLA 657 Query: 646 SEEKMKLVVKV-TGDHVAVVGENRKLLIFSIDQI---PEMSRG 684 EK + +A + +LL+F++D + P+ RG Sbjct: 658 EGEKPLPPSRADAAGQIACLSLGGRLLVFALDDLKLQPKGGRG 700 >gi|319639079|ref|ZP_07993836.1| DNA topoisomerase 4 subunit A [Neisseria mucosa C102] gi|317399657|gb|EFV80321.1| DNA topoisomerase 4 subunit A [Neisseria mucosa C102] Length = 767 Score = 488 bits (1257), Expect = e-135, Method: Compositional matrix adjust. Identities = 272/741 (36%), Positives = 413/741 (55%), Gaps = 40/741 (5%) Query: 27 EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86 E YL YA+S +K RA+P++ DG KPV RRI+ AM +MGL GA KSAR+VGE++GK Sbjct: 25 ERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGEILGKY 84 Query: 87 HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQG 146 HPHGD S Y+++VR+AQ F RYPLI G GNFG+ DGD AAA RYTEAR+T +AEL+L Sbjct: 85 HPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAELLLSE 144 Query: 147 VDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALAL 206 +++ VDF Y+ EP+ P++ P +L NG SGIAVGMAT IPSHN+ E+ +AA+AL Sbjct: 145 INQGTVDFVPNYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIPSHNLNEVTQAAIAL 204 Query: 207 IDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSW 266 + P + L++YI PDF GG I+ + + Y G+G RVRAR+ +E++ RG W Sbjct: 205 LKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETGKGSVRVRARYEIEKLARGQW 264 Query: 267 CIVVTEIPYQVQKSRLIEKIAELIIAK------------------RIPLLEDIRDES--A 306 ++VTE+P ++++ +I E K + L++ +RDES Sbjct: 265 RVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDQLNTKKLMLDLIDRVRDESDGE 324 Query: 307 EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366 VR+V PK+ +D D + ++ + +E +N+ ++ + P L IL+EWL Sbjct: 325 HPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMMGLDNRPAQKNLKTILQEWLD 384 Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426 R + RR FR+ +++R+ IL+G L +L+IDE+I +IR D PK +++ F LTE Sbjct: 385 FRVVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKVIRESDDPKADLMAAFGLTEI 444 Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486 Q + IL +RLR L +LE ++++ EL+ L E+ +++ LL ++ I +KE+ Sbjct: 445 QAEDILEIRLRQLARLEGFKLEKELNELREEQGRLNILLGDENEKRKLI------IKEMQ 498 Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546 + G R T E A +A L Q + EPIT+++S +GWIRS H++DLS FK Sbjct: 499 ADMKQFGDARRTLVE--EAGRAVLTQTTAD-EPITLILSEKGWIRSRAGHNLDLSQTAFK 555 Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606 EGD LK L T +++L + G+ YTL A + GRG G + LI+L + V Sbjct: 556 EGDRLKQTLEGRTVLPVVILDSLGRTYTLDAAEIPGGRGDGVPVSSLIELQNGAKPVAML 615 Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD------- 659 L+ S G FI + ++++ + GK + V S E + V V Sbjct: 616 TGQPEQHYLLSGSGGYGFIAKLADMVGRVKAGKVVMTVDSSETVLPPVAVYASSLINPDC 675 Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719 + + + +LL FSI ++ M +G+G++L S +G + + T + R Sbjct: 676 KIVLASSDHRLLAFSIGELKVMPKGRGLQLMSLAEGASLEHVMVTTSPEFTVVSVGRRGA 735 Query: 720 NRSEN----DLLGWLGKRGGV 736 E D+ G GK+G V Sbjct: 736 EHQEKLRIADIDGKRGKKGKV 756 >gi|237653593|ref|YP_002889907.1| DNA topoisomerase IV subunit A [Thauera sp. MZ1T] gi|237624840|gb|ACR01530.1| DNA topoisomerase IV, A subunit [Thauera sp. MZ1T] Length = 814 Score = 488 bits (1257), Expect = e-135, Method: Compositional matrix adjust. Identities = 264/693 (38%), Positives = 401/693 (57%), Gaps = 29/693 (4%) Query: 23 RFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEV 82 R+A E YLAYA+S +K RA+P + DG KPV RRI+ AM+EM L + KSAR+VG+V Sbjct: 71 RYA-ERAYLAYAMSVVKSRALPQVEDGLKPVQRRILFAMNEMRLSSTSKHVKSARVVGDV 129 Query: 83 IGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAEL 142 IGK HPHGD SVYD++VR+AQ F RYPL+ GQGNFG+ DGDSAAA RYTE R+T +AEL Sbjct: 130 IGKYHPHGDSSVYDAMVRVAQDFSLRYPLVDGQGNFGSRDGDSAAAMRYTECRLTPIAEL 189 Query: 143 ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEA 202 +L +D VDF Y+ EP + P++ P +L NG SGIAVGMAT IP HN++E+ EA Sbjct: 190 LLSEIDRGTVDFIPNYDGAFEEPQLLPARLPFVLLNGASGIAVGMATEIPPHNLREVAEA 249 Query: 203 ALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVG 262 LI +PE +++ +L + GPDFP GG ++ + ++I E+Y GRG R+RARW +EE+ Sbjct: 250 TCHLIRHPEATLDDVLAMLPGPDFPGGGQLISTPQTIREAYATGRGSLRLRARWKIEELA 309 Query: 263 RGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR------------------IPLLEDIRDE 304 RG W +V E+P+ V ++++ +I L + + L+ +RDE Sbjct: 310 RGQWRAIVEELPHGVSAAQVLSEIETLTNPQPRAGKKEVSQEQKNLRQLVLGALDTVRDE 369 Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362 S++ VRIVL PK+ + D M + + +ET +NM ++ PQ L IL+ Sbjct: 370 SSDKAPVRIVLEPKSSRQNRDEFMAVLLAHTSLETSASVNMTMIGRDGRPQQKNLVQILR 429 Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422 EW+ R + RR+ R+ +DRR+ IL+G +IA+L+I+E+I +IR D+PKP +++ F Sbjct: 430 EWIDFRYVTVERRTRHRLDEVDRRIHILEGRMIAFLHIEEVIRVIRESDEPKPALIAAFG 489 Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482 L++ Q + IL +RLR L +LE ++I+ EL L E+ + LL+S I EI++ Sbjct: 490 LSDVQAEDILEIRLRQLARLEGFKIEKELAELKDERAGLQHLLDSRAAMTKLILKEIQDD 549 Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542 + + RRT V+ A + + EP+TV++S GW+RS + H +D + Sbjct: 550 AKKYGDD-----RRTLVEAVAAVAPAEIS---VPDEPVTVIVSKNGWVRSRQGHGIDPAG 601 Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602 + +K GD L TT ++++ +G+AYT+ L GRG G I L++ + Sbjct: 602 IAYKAGDFGFAVLETRTTWPLIVIDGNGRAYTVKVSELPGGRGDGAPITTLVEFQDGGKL 661 Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVA 662 +S G F+ ++ + R GK F+ + EK+ KV GD +A Sbjct: 662 AQVVTDTPDSVYFFANSGGYGFLCSVADASSRQRAGKAFMSLEKGEKVLAPAKVFGDWIA 721 Query: 663 VVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDG 695 EN ++L+F ++ S G+GV + + +G Sbjct: 722 AASENGRILVFPRPEMKTQSGGRGVIVMALDEG 754 >gi|239995394|ref|ZP_04715918.1| DNA topoisomerase IV subunit A [Alteromonas macleodii ATCC 27126] Length = 761 Score = 488 bits (1256), Expect = e-135, Method: Compositional matrix adjust. Identities = 266/745 (35%), Positives = 434/745 (58%), Gaps = 25/745 (3%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 + V+ + LR E+ YL Y++ I +RA+P + DG KPV RRII+AMS++GL A +KK Sbjct: 10 DGVEQLPLRRFTEDAYLNYSMYVIMDRALPHISDGLKPVQRRIIYAMSDLGLSANAKYKK 69 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTE 133 SAR VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S AA RYTE Sbjct: 70 SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 129 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 A++++ +E++L + + VD+ ++ +EP V P++ P++L NG +GIAVGMAT IP Sbjct: 130 AKLSRFSEVLLNELGQGTVDWVPNFDGTLNEPSVLPARLPHILLNGVTGIAVGMATDIPP 189 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HNV+E+ A L+DN + + +LE++ GPD+PT I+ + I + Y GRG ++R Sbjct: 190 HNVRELANACAMLLDNSKAELSDVLEHVNGPDYPTEAEIITPKSDIQKLYETGRGSIKMR 249 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRI 311 A + +EE G +V+T +P+Q ++++E+IA + AK++P++ D+RDES + R+ Sbjct: 250 AVY-MEENGD----VVITALPHQASGAKILEQIAAQMQAKKLPMVSDLRDESDHENPTRL 304 Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371 V+ P++ +D LM+ +F +D+E + +N+N++ + PQV L IL EWL +R++ Sbjct: 305 VITPRSNRIDVTQLMQHLFATTDLEKNYRVNLNMIGLDGRPQVKDLRTILSEWLQYRKDT 364 Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431 + RR +R+ + R+ IL+GLLIA+LNIDE+I IIR DKPKP +++RF L++ Q +AI Sbjct: 365 VTRRLQYRLDKVLARLHILEGLLIAFLNIDEVIEIIRTYDKPKPELMARFGLSDTQAEAI 424 Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491 L L+LR L KLEE +IK E D L E++K+ LL S ++ I KEI + + Sbjct: 425 LELKLRHLAKLEEMKIKGEQDELAEERDKLQQLLGSDRRLKTLIK------KEILADAEK 478 Query: 492 LG-RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDS 550 G RR+ E A KA ++ ++ E +TVV+S +GW R K H +D L +K GD+ Sbjct: 479 YGDDRRSPIVERGEA-KALSEKELVPAESVTVVLSEKGWARCAKGHDIDAEGLSYKAGDA 537 Query: 551 LKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDS 610 + + + + + G+ ++ A L S R GE + + + + Sbjct: 538 YLSSAEGKSNQPAVFMDSSGRTFSCDAHGLPSARSQGEPLTGRFSIVGGESFQHVIMAQD 597 Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---DHVAVVGEN 667 K LV S G F+ ++++ + GK +L + + K+ VT D + Sbjct: 598 ESKFLVGSDAGYGFVGTFKDMVSKNKAGKAYLSLPTAAKVMKPTPVTNPDSDWCLSISNE 657 Query: 668 RKLLIFSIDQIPEMSRGKG---VRLQSYKDGGISDV--ICFKICEGLTWIDSAG-RSYNR 721 ++L+F + +P + +GKG + + S K + + + +G AG R+ Sbjct: 658 GRMLMFPLRDLPSLGKGKGNKLINIPSAKSQSREEYVKVLAVVPDGAAIKVGAGKRNMTL 717 Query: 722 SENDLLGWLGKRGGVGSLVPKGFPR 746 + +DL + G+RG G+ +P+G R Sbjct: 718 TADDLTHYQGERGRRGNKLPRGLQR 742 >gi|238897995|ref|YP_002923675.1| DNA topoisomerase IV, subunit A [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229465753|gb|ACQ67527.1| DNA topoisomerase IV, subunit A [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 745 Score = 488 bits (1255), Expect = e-135, Method: Compositional matrix adjust. Identities = 277/753 (36%), Positives = 441/753 (58%), Gaps = 24/753 (3%) Query: 10 NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69 N + ++L E+ YL Y++ I +RA+P + DG KPV RRI++AMSE+GL+ Sbjct: 2 NQFTQPTEDYLALHTFTEKAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNNT 61 Query: 70 AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAA 128 A FKKSAR VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S AA Sbjct: 62 AKFKKSARAVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAA 121 Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188 RYTE+R+++ AE++L+ + E VD++ ++ EP + P++ PN+L NGT+GIAVGMA Sbjct: 122 MRYTESRLSKYAEVLLRELGEGTVDWQANFDGTLQEPKMLPARLPNILLNGTTGIAVGMA 181 Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248 T IP HN++EI A + LID P+IS+++L+ ++ GPDFPT I+ RE I + YR GRG Sbjct: 182 TDIPPHNIKEIAYALIQLIDQPQISLKELMRWVQGPDFPTEAEIISPREEIEQIYRTGRG 241 Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308 R+RA W EE V+T +P+QV ++++E+IA+ + AK++P+LED+RDES + Sbjct: 242 SIRMRAVWKKEEGN-----AVITALPHQVSGAKILEQIAQQMRAKKLPMLEDLRDESDHE 296 Query: 309 --VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366 R+++ P++ + + +M +F +D+E +NMN++ + + P V L IL EWL Sbjct: 297 HPTRLIIMPRHHGVHLEAVMNHLFATTDLEKSVRINMNMIGLDQRPLVKGLVSILTEWLT 356 Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426 RR L RR F + I +R+ +LKGLL+A+LNIDE+I IIR ED+ K ++SRF L+ Sbjct: 357 FRRATLRRRLLFNLDKILKRLHVLKGLLVAFLNIDEVIHIIRTEDEQKSFLISRFGLSLI 416 Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486 Q DAIL L+LR L KLEE I++E D L E + SLL S K+ N I +I++ ++ Sbjct: 417 QADAILELKLRHLAKLEEINIRAEQDALEKESGTLQSLLASEKKLNNLIKKDIQDDACLY 476 Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546 ++ RR+ + + A K + + ++ EP+TV++S GW R K H +D L++K Sbjct: 477 GQN-----RRSPLVQRT-ASKESNENEVLPSEPVTVILSKMGWARCAKGHEIDPVGLNYK 530 Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606 + D+ + +LL + G+ Y L L R GE + + + Sbjct: 531 KSDAFYAMARGKSHQSFVLLDSTGRTYALDPMKLPHARHQGEPVMGKLTPPQGAVVKALM 590 Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--KLVVKVTGDHVAVV 664 + + L+ S G FI ++++A R GK + + ++ L++ ++ + Sbjct: 591 MAEPEQSYLMASDAGYGFICTFADMVAKNRGGKILMTLPEGAQILPPLLITHANHYLLSI 650 Query: 665 GENRKLLIFSIDQIPEMSRGKGVR----LQSYKDGGISDVICFKIC---EGLTWIDSAGR 717 ++LIFS+ +P +S+GKG + L + G+ VI + + +T + S R Sbjct: 651 TALGRMLIFSMADLPTLSKGKGNKIISILSADWQAGLDRVIHLFMLPPNQSVT-LYSGKR 709 Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750 + + L + +RG G+L+P+GF R K Sbjct: 710 KLHLTHQHLQKFCSQRGKRGTLLPRGFQRIDKI 742 >gi|319897149|ref|YP_004135344.1| DNA topoisomerase iv, subunit a [Haemophilus influenzae F3031] gi|317432653|emb|CBY81016.1| DNA topoisomerase IV, subunit A [Haemophilus influenzae F3031] Length = 744 Score = 488 bits (1255), Expect = e-135, Method: Compositional matrix adjust. Identities = 272/743 (36%), Positives = 437/743 (58%), Gaps = 29/743 (3%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 E ++ + LR E+ YL Y++ I +RA+P + DG KPV RRI++AMSE+GL+ A +KK Sbjct: 7 EGIEQMPLRTFTEKAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKYKK 66 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTE 133 SAR VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S AA RYTE Sbjct: 67 SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 126 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 +R+++++E++L + + VD++ ++ +EP P++ P++L NGT+GIAVGMAT IP Sbjct: 127 SRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATDIPP 186 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ EI +A + L+DNP+ ++ +LE + GPDFPT I+ + I + Y GRG ++R Sbjct: 187 HNINEIADATVMLLDNPKAGLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRGSIKMR 246 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRI 311 A W E+ I+++ +P+Q S++I +IA+ + AK++P+LEDIRDE+ + +RI Sbjct: 247 ATWKKED-----GEIIISALPHQSSPSKVIAQIADQMTAKKLPMLEDIRDEADHENPIRI 301 Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371 VL P++ +D D LM +F +D+E + +NMN++ + P V L IL EWL RR Sbjct: 302 VLVPRSNRVDTDALMAHLFATTDLEKSYRVNMNMIGLDHKPAVKGLLEILNEWLTFRRTT 361 Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431 + RR +R+ + R+ IL+GL+IA+LNIDE+I IIR+ED PK ++ RF+L++ Q DAI Sbjct: 362 VTRRLQYRLDKVLSRLHILEGLMIAFLNIDEVIEIIRHEDDPKAELMVRFNLSDEQADAI 421 Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491 LNLRLR L KLEE Q+K+E D L E+ ++++L S ++ I EI+E + ++ Sbjct: 422 LNLRLRHLAKLEENQLKAEQDELEKERLNLEAILGSERRLNTLIKKEIQEDAKKYASP-- 479 Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551 R + E R + + ++ + P+TV++S GW+R K H +D +L +K GD+ Sbjct: 480 ---RMSQLVE--REEAKMISES--DMTPVTVILSEMGWVRCAKGHDIDPKSLSYKAGDNY 532 Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611 + ++ + + G++Y L +L S R GE + ++L I + Sbjct: 533 LAHACGKSNQAVVFIDSTGRSYALDPLSLPSARSQGEPLTGKLNLPTGATIEYVVMASEQ 592 Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVAVVGENR 668 +LL+ S G FI + ++IA + GK + + K+ K ++ T VA+ R Sbjct: 593 QELLMASDAGYGFICKFEDLIARNKTGKALISLPENAKVLKPKTLINSTALVVAITSAGR 652 Query: 669 KLLIFSIDQIPEMSRGKGVRLQSYKDGGISD-------VICFKICEGLTWIDSAGRSYNR 721 +LIF +P +S+GKG ++ + D ++ L + S R Sbjct: 653 -MLIFPAQDLPVLSKGKGNKMITIPAANAKDRSELLTKLLLISDQASLEFY-SGKRKIVL 710 Query: 722 SENDLLGWLGKRGGVGSLVPKGF 744 DL + +RG GS +P+G Sbjct: 711 KPEDLQKFRAERGRKGSTLPRGL 733 >gi|78484729|ref|YP_390654.1| DNA topoisomerase IV subunit A [Thiomicrospira crunogena XCL-2] gi|78363015|gb|ABB40980.1| DNA topoisomerase IV subunit A [Thiomicrospira crunogena XCL-2] Length = 742 Score = 488 bits (1255), Expect = e-135, Method: Compositional matrix adjust. Identities = 258/695 (37%), Positives = 416/695 (59%), Gaps = 15/695 (2%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 E ++ S+ E+ YL YA+ I +RA+P + DG KPV RRII+AMSE+GL A KK Sbjct: 9 EGIEQQSVAQFTEKAYLDYAMYVILDRALPHIGDGLKPVQRRIIYAMSELGLKSTAKHKK 68 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTE 133 SAR VG+V+GK HPHGD + Y+++V +AQ F RYPL+ GQGN+G++D S AA RYTE Sbjct: 69 SARTVGDVLGKFHPHGDSACYEAMVLMAQDFSFRYPLVDGQGNWGSVDDPKSFAAMRYTE 128 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 A++++ ++L+L+ + VD+ ++ +EP V P++ P++L NGTSGIAVGMAT IP Sbjct: 129 AKLSKFSQLLLEETAQGTVDWVPNFDGSLNEPSVLPARVPHVLLNGTSGIAVGMATDIPP 188 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN++E+ A +AL+DN ++ ++L E++ GPD+P +++ + Y G G R R Sbjct: 189 HNLREVVNACVALLDNQNLTTQELCEHLPGPDYPNNALVITPAAERLRLYETGSGSIRQR 248 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRI 311 A + VEE +V+ +P+QV ++++E+IA + AK++P++ D+RDES + +R+ Sbjct: 249 ANYFVEE----GVNVVIDALPFQVSGAKVLEQIASQMRAKKLPMVVDLRDESDHENPIRL 304 Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371 V+ +++ +D + M +F +D+E + +N+NV+ + PQV L +L EWL +R E Sbjct: 305 VVELRSKRVDVEAAMLHLFATTDLERSYRVNLNVIGLNGRPQVKSLKTMLTEWLVYRTET 364 Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431 + RR R+ + R+ IL GLLIA+LNIDE+IAIIR EDKPKPV++ RF L++ Q +A+ Sbjct: 365 VRRRLQHRLDKVLARLHILDGLLIAFLNIDEVIAIIREEDKPKPVLMERFGLSDTQAEAV 424 Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491 L L+LR L KLEE +I+ E + L AE++KI+ +L S + + KE+ S + Sbjct: 425 LELKLRQLAKLEEMRIRGEQEELEAERKKIEKILGSAARMKTLVK------KELLSDAEA 478 Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551 G R + ++ +A +Q ++ E ITVV+S GW+R+ K H VD L +K GD+ Sbjct: 479 YGDDRRSPLSDAKQAQAMSEQDLLPSESITVVLSENGWVRAAKGHDVDGRTLGYKSGDAF 538 Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611 + + L G+AY+LPA +L S R HGE + + + Sbjct: 539 CSQALGQSRQLSVFLDDTGRAYSLPAHSLPSARSHGEPLTGRLSPASGAKFKQVMLGQPK 598 Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKL 670 + ++ SS G FI E + + + GK + + ++ +V ++ V VV + ++ Sbjct: 599 EQYVLASSAGYGFITELENLYSKNKAGKAAISLPKGSELLAPARVEAENWVMVVTDEPRM 658 Query: 671 LIFSIDQIPEMSRGKGVRLQSYKDG-GISDVICFK 704 L+F + ++P +S+GKG +L G + + FK Sbjct: 659 LVFEMSELPVLSKGKGNKLMQMPKGVSVKAIFAFK 693 >gi|109896837|ref|YP_660092.1| DNA topoisomerase IV subunit A [Pseudoalteromonas atlantica T6c] gi|109699118|gb|ABG39038.1| DNA topoisomerase IV subunit A [Pseudoalteromonas atlantica T6c] Length = 770 Score = 487 bits (1253), Expect = e-135, Method: Compositional matrix adjust. Identities = 264/745 (35%), Positives = 439/745 (58%), Gaps = 23/745 (3%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 ++ ++ + +R EE YL Y++ I +RA+P + DG KPV RRI++AMSE+GL A +K Sbjct: 9 KDGIEQLPMRQFTEESYLNYSMYVIMDRALPHIGDGLKPVQRRIVYAMSELGLSNNAKYK 68 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYT 132 KSAR VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S AA RYT Sbjct: 69 KSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYT 128 Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192 E+R+++ +E++L + + VD++ ++ EP + P++ P++L NG +GIAVGMAT IP Sbjct: 129 ESRLSKFSEVLLTELGQGTVDWQPNFDGTLDEPKILPARLPHILLNGITGIAVGMATDIP 188 Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252 HNV+E+ A L+DN + + +LLE++ GPD+PT I+ + I + Y GRG ++ Sbjct: 189 PHNVREVANACAHLLDNSKAELHELLEFVQGPDYPTDAEIITPQSDIRKMYETGRGSIKM 248 Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VR 310 RA + EE G I++T +P+Q +++E+IA + AK++P++ D+RDES + R Sbjct: 249 RAVY-YEEAGD----IIITALPHQASGGKVLEQIAAQMQAKKLPMVSDLRDESDHENPTR 303 Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370 +++ P++ +D + LM+ +F +D+E + +N+N++ + PQV L IL EWL R++ Sbjct: 304 LLITPRSNRVDVEQLMQHLFATTDLEKNYRVNINMIGLDGRPQVKDLRMILSEWLIFRKD 363 Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDA 430 + RR +R+ + R+ IL+GL+IA+LNIDE+I IIR EDKPK V++ FSL++ Q +A Sbjct: 364 TVVRRLQYRLDKVLARLHILEGLMIAFLNIDEVIRIIRYEDKPKLVLMDTFSLSDIQAEA 423 Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490 IL L+LR L KLEE +IK E D L E++++ +L S ++ I EI E++ Sbjct: 424 ILELKLRHLAKLEEMKIKGEQDELAKERDELQLILGSDRRLKTLIKKEILAAAEMYGDD- 482 Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDS 550 RR+ E S + KA ++ +I E +TVV+S +GW R K H VD+ L +K GD Sbjct: 483 ----RRSPIIERSES-KALSEKELIPSEAVTVVLSEKGWARCAKGHDVDVVGLSYKAGDK 537 Query: 551 LKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDS 610 + + + + + T G+A++ A L S R GE I + + + + Sbjct: 538 YLASSKGRSNQQAVFMDTSGRAFSCDAHLLPSARSQGEPITGRFSIVSGESVEHVVMGQD 597 Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHVAVVGEN 667 + L+ S G F+ + +++I+ R GK ++ + K+ + V ++ D + Sbjct: 598 EQQYLIASDAGYGFVGKFADMISKNRAGKAYISLPKAAKIIAPQAVHDLSSDWCLAISNE 657 Query: 668 RKLLIFSIDQIPEMSRGKG---VRLQSYKDGGISDV--ICFKICEGLTWIDSAG-RSYNR 721 ++L+F + +P + +GKG + + S K + + + +G AG R Sbjct: 658 GRMLMFPLRDLPSLGKGKGNKIISIPSAKSQAREEFVKVLAVVPQGANIKVLAGKRGMTL 717 Query: 722 SENDLLGWLGKRGGVGSLVPKGFPR 746 + +DL + G+RG G+ +P+G R Sbjct: 718 TADDLTHYQGERGRRGNKLPRGLQR 742 >gi|299066934|emb|CBJ38129.1| DNA topoisomerase IV, subunit A [Ralstonia solanacearum CMR15] Length = 781 Score = 486 bits (1252), Expect = e-135, Method: Compositional matrix adjust. Identities = 270/718 (37%), Positives = 410/718 (57%), Gaps = 38/718 (5%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 E +A++L E YL YA+S +K RA+P++ DG KPV RRI+ AM EMGL A K Sbjct: 12 EPAEALTLAHYAERAYLDYAVSVVKGRALPEVADGQKPVQRRILFAMHEMGLRADAKPVK 71 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 SAR+VG+V+GK HPHGDQS YD+LVRLAQ F RYPLI GQGNFG+ DGD AAA RYTEA Sbjct: 72 SARVVGDVLGKYHPHGDQSAYDALVRLAQDFSLRYPLIDGQGNFGSRDGDGAAAMRYTEA 131 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 R+T ++ L+L+ +D+ VDF Y+ EP + P++ P +L NG SGIAVGMAT IPSH Sbjct: 132 RLTPISRLLLEELDQGTVDFIPNYDGSMDEPRLMPARLPFVLLNGASGIAVGMATEIPSH 191 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 N++E+ AA+ALI + ++ L +YI GPDFP GG I+ S I + Y GRG +VRA Sbjct: 192 NLREVATAAVALIRDDTLTSTDLTQYIPGPDFPGGGQIISSAADIAQIYETGRGSLKVRA 251 Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAK------------------RIP 296 RW +E++ RG W +VVTE+P +++E+I EL K + Sbjct: 252 RWKIEDLARGQWQLVVTELPPNTSSQKVLEEIEELTNPKVRTGKKSLTPEQLQLKQTMLG 311 Query: 297 LLEDIRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQV 354 LL+ +RDES +D VR+V PK++++ ++ + +E+ +N+ ++ P+ Sbjct: 312 LLDAVRDESGKDAPVRLVFEPKSKNIGQQEFANALLAHTSLESGAAINLVMIGTDGRPRQ 371 Query: 355 MPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK 414 L IL+EW+ +R + RR+ R+ ++ R+ IL+G + L I+E+I IIR D+PK Sbjct: 372 KGLREILREWIDYRFATVTRRTRHRLGKVEDRIHILEGRQMVLLRIEEVIRIIRESDEPK 431 Query: 415 PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQ 474 ++ F+L++ Q + IL +RLR L +LE +I+ EL NL E+ ++D LL S + Sbjct: 432 AALIQAFNLSDRQAEDILEIRLRQLARLEAIKIEQELKNLREEQAELDVLLKS------E 485 Query: 475 IACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK 534 R VKEI + + G R T + R A ++ + EP+TV++S +GW+R+ + Sbjct: 486 TMMRRRIVKEIETDAKQFGDDRRTLIQEERRAAAEVK---VVDEPVTVIVSQKGWVRTRQ 542 Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLST-----DGKAYTLPAGNLLSGRGHGEA 589 H D + FK GD+L TTD +L+ T G+ Y++ NL GRG G Sbjct: 543 GHGHDATQFGFKAGDTLYDTFECRTTDALLIFGTRDDKGTGRVYSVAVANLPGGRGDGVP 602 Query: 590 IQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649 + LI+L I + +L+ + GN F+ + +++ + GK FL + ++ Sbjct: 603 LTTLIELAPGTHIAHTLASHAEQNVLISTQGGNGFLAKVGDMVGRQKGGKAFLTLDEGDQ 662 Query: 650 MKLVVKVTGDH--VAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSY-KDGGISDVICF 703 V D A + N +LL+F + ++ + S G+GV L K+ ++ + F Sbjct: 663 PNKPAAVPEDAYGAACLSANGRLLLFPLSEVKTLASGGRGVILMELEKNETLAQALAF 720 >gi|160900515|ref|YP_001566097.1| DNA topoisomerase IV subunit A [Delftia acidovorans SPH-1] gi|160366099|gb|ABX37712.1| DNA topoisomerase IV, A subunit [Delftia acidovorans SPH-1] Length = 795 Score = 486 bits (1252), Expect = e-135, Method: Compositional matrix adjust. Identities = 264/717 (36%), Positives = 405/717 (56%), Gaps = 63/717 (8%) Query: 30 YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF-------GAAFKKSARIVGEV 82 YL YALS +K RA+PD+ DG KPV RRI++AM MGL + A KSAR+VG+V Sbjct: 28 YLEYALSVVKGRALPDVTDGLKPVQRRILYAMDRMGLSYSGPNHNTAAKPVKSARVVGDV 87 Query: 83 IGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAEL 142 +G+ HPHGDQS YD+LVR+AQ F QRYPL+ GQGNFG+ DGD AAA RYTEAR++++ L Sbjct: 88 LGRFHPHGDQSAYDALVRMAQDFNQRYPLVDGQGNFGSRDGDGAAAMRYTEARLSKITGL 147 Query: 143 ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEA 202 +L +D VDF Y+ EP P++ P L NG SGIAVG+AT IPSHN++E+ +A Sbjct: 148 LLDEIDMGTVDFVPNYDGSTQEPQQLPARLPFALLNGASGIAVGLATEIPSHNLREVADA 207 Query: 203 ALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVG 262 +ALI P++S E+L + I GPD+P GG I+ S I ++YR GRG ++RARW +EE+ Sbjct: 208 CVALIKRPQLSDEELFQIIPGPDYPGGGQIISSASDIQDAYRTGRGSLKLRARWKIEELA 267 Query: 263 RGSWCIVVTEIPYQVQKSRLIEKIAEL------------------IIAKRIPLLEDIRDE 304 RG W +VVTE+P V +++E+I ++ + A + +L+ +RDE Sbjct: 268 RGQWQMVVTELPPGVSAQKVLEEIEDITNPKVKTGKKALSQEQTQLKASMLAVLDGVRDE 327 Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362 S++D VR+V PK + L+ ++ + +E+ +N+ ++ + P L +L+ Sbjct: 328 SSKDAPVRLVFEPKTGKVPQQELITALLAHTSLESSSSINLTMIGLDGRPVQKSLRLMLE 387 Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422 EW+A R+ + RRS R+ + R+ IL+G LNID++IAIIR D+P+ ++ F+ Sbjct: 388 EWIAFRQTTVTRRSQHRLAKVLDRIHILEGRQAVLLNIDKVIAIIRASDEPRQALIDAFA 447 Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482 L+E Q D IL +RLR L +LE +I+ EL L E+ K++ +L S + ++ C Sbjct: 448 LSERQADDILEIRLRQLARLEAIKIEQELKELRTEQGKLEDILGS-ESTMRRLIC----- 501 Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542 KEI + + R T + K + + + EP TV+IS++GW+R+ + H VD Sbjct: 502 KEIEADAKQFADARRTLIQEE---KKVVAEVKVVDEPTTVIISDKGWVRTRQGHGVDAGT 558 Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602 L FK GDSL T D++L ++G+ Y++P L GRG G+ + LI+L I Sbjct: 559 LSFKAGDSLHGTFECRTVDQLLAFGSNGRIYSVPVAQLPGGRGDGQPVTTLIELEAGTQI 618 Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS----------------- 645 + F LL+ S G F+ ++++ + GK F+ ++ Sbjct: 619 LYYFAGAEGTALLLSGSGGYGFVAMVGDMVSRQKAGKAFVTLADGETLCAPSTAYGVPMG 678 Query: 646 -------SEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKD 694 E+ L++ T HV ++L F I + M++ G+G+ L +D Sbjct: 679 ARAEPQEGEQGAGLLLPAT--HVICASTGGRILTFEIASLKHMAKGGRGLMLLDLED 733 >gi|296391805|ref|ZP_06881280.1| DNA topoisomerase IV subunit A [Pseudomonas aeruginosa PAb1] Length = 644 Score = 486 bits (1252), Expect = e-135, Method: Compositional matrix adjust. Identities = 253/645 (39%), Positives = 395/645 (61%), Gaps = 16/645 (2%) Query: 6 ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65 +S S L E V+ SL E+ YL Y++ I +RA+P + DG KPV RRI++AMSE+G Sbjct: 1 MSESLDLSLEGVERRSLAEFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIVYAMSELG 60 Query: 66 LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124 LD + KKSAR VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D Sbjct: 61 LDADSKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPK 120 Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184 S AA RYTEAR+++ +E++L + + VD+ ++ EP V P++ PNLL NGT+GIA Sbjct: 121 SFAAMRYTEARLSRYSEVLLSELGQGTVDWVPNFDGTLDEPAVLPARLPNLLLNGTTGIA 180 Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244 VGMAT +P HN++E+ A + L+D P ++ +L E++ GPDFPT I+ R + + Y Sbjct: 181 VGMATDVPPHNLREVASACVRLLDQPGATVAELCEHVPGPDFPTEAEIITPRADLQKVYE 240 Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304 GRG R+RA + VE+ IV+ +P+QV S+++E+IA + AK++P++ D+RDE Sbjct: 241 TGRGSVRMRAVYRVED-----GDIVIHALPHQVSGSKVLEQIAGQMQAKKLPMVADLRDE 295 Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362 S + RIV+ P++ +D + LM +F +D+ET + +N+N++ + PQV L +L Sbjct: 296 SDHENPTRIVIIPRSNRVDVEELMTHLFATTDLETSYRVNLNIIGLDGKPQVKDLRQLLS 355 Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422 EWL R + RR FR+ ++RR+ +L GLLIA+LN+DE+I IIR ED+PK V++ RF Sbjct: 356 EWLQFRIGTVRRRLQFRLDKVERRLHLLDGLLIAFLNLDEVIHIIRTEDQPKAVLMERFE 415 Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482 L+E Q D IL+ RLR L +LEE +I+ E + LL E++++ +LL S + + E+ + Sbjct: 416 LSEVQADYILDTRLRQLARLEEMKIRGEQEELLKEQKRLQTLLGSEAKLKKLVREELIKD 475 Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQA-MIEKEPITVVISNRGWIRSLKSHSVDLS 541 E + RR+ V+RA+ L + ++ EP+TVV+S +GW+R K H +D + Sbjct: 476 AETYGDD-----RRSPI--VARAEARALSETELMPTEPVTVVLSEKGWVRCAKGHDIDAA 528 Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD 601 L +K GD K A + + + + G++Y+LPA +L S RG GE + + Sbjct: 529 GLSYKAGDGFKAAAPGRSNQYAVFIDSTGRSYSLPAHSLPSARGQGEPLSGRLTPPPGAS 588 Query: 602 IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS 646 + D ++ S G F+V+ ++ A + GK L + + Sbjct: 589 FECVLLPDDDALFVIASDAGYGFVVKGEDLQAKNKAGKALLSLPN 633 >gi|120610029|ref|YP_969707.1| DNA topoisomerase IV subunit A [Acidovorax citrulli AAC00-1] gi|120588493|gb|ABM31933.1| DNA topoisomerase IV subunit A [Acidovorax citrulli AAC00-1] Length = 785 Score = 486 bits (1251), Expect = e-135, Method: Compositional matrix adjust. Identities = 270/692 (39%), Positives = 394/692 (56%), Gaps = 46/692 (6%) Query: 30 YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK-------KSARIVGEV 82 YL YALS +K RA+PD+ DG KPV RRI+ AM MGL +G + KSAR+VG+V Sbjct: 30 YLEYALSVVKGRALPDVCDGMKPVQRRILFAMERMGLAYGGPTRNVPAKPVKSARVVGDV 89 Query: 83 IGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAEL 142 +G+ HPHGDQS YD+LVRLAQ F QRYPLI GQGNFG+ DGD AAA RYTEAR+T++A L Sbjct: 90 LGRFHPHGDQSAYDALVRLAQDFSQRYPLIDGQGNFGSRDGDGAAAMRYTEARLTRIASL 149 Query: 143 ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEA 202 +L +D+ VDF Y+ EP P++ P L NG SGIAVG+AT IPSHN++EI +A Sbjct: 150 LLDEIDQGTVDFVPNYDGSTEEPRQLPARLPFALLNGASGIAVGLATEIPSHNLREIADA 209 Query: 203 ALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVG 262 +AL+ NP+++ E+L + GPD+P GG I+ S I ++YR GRG +VRARW +E++ Sbjct: 210 CVALVKNPKLADEELAALVPGPDYPGGGQIISSPGDIQDAYRTGRGSLKVRARWKIEDLA 269 Query: 263 RGSWCIVVTEIPYQVQKSRLIEKIAEL------------------IIAKRIPLLEDIRDE 304 RG W +VVTE+P V +++E+I EL + A + +L+ +RDE Sbjct: 270 RGQWQMVVTELPPGVSAQKVLEEIEELTNPKVKAGKKALSQEQTQLKATVLGVLDVVRDE 329 Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362 S++D VRIV PK + L+ ++ + +ET P+N+ ++ + P L +L+ Sbjct: 330 SSKDAPVRIVFEPKTGRVPQQELITTLLAHTSLETSAPINLTMVGLDGKPVQKSLRRMLE 389 Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422 EW+A R++ + RRS R+ + R+ IL+G LNIDE+IAIIR D+PK ++ RF Sbjct: 390 EWIAFRQQTITRRSQHRLAKVLDRIHILEGRQTVLLNIDEVIAIIRASDEPKAALIERFR 449 Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482 L++ Q + IL +RLR L +LE +I+ EL L E+ K++ +L N + V Sbjct: 450 LSDRQAEDILEIRLRQLARLEAIKIEQELKELREEQGKLEDILA------NPASLRRLMV 503 Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542 KEI + + R T + ADK + + EP+TVV+S +GW+R+ + H D Sbjct: 504 KEIEADAKQFADARRTLIQ---ADKRATAEVKVVDEPVTVVVSQKGWVRARQGHGHDAGT 560 Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602 FK GD+L T D ++ ++G+ Y++ L RG G+ I LIDL Sbjct: 561 FAFKSGDALYGTFECRTVDTLIAFGSNGRVYSVAVSQLPGARGDGQPITTLIDLEAGTQP 620 Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGD 659 V F + LL+ S G FI + A R GK F+ + E++ +G Sbjct: 621 VHYFAGPANAALLLAGSGGYGFIAAVEHMTARNRGGKAFVSLGEGEQLCRPSHAAFTSGS 680 Query: 660 -------HVAVVGENRKLLIFSIDQIPEMSRG 684 HV ++L F I ++ +M+ G Sbjct: 681 QPLAPATHVCCASAGGRILTFEITELKQMANG 712 >gi|222110144|ref|YP_002552408.1| DNA topoisomerase iv subunit a [Acidovorax ebreus TPSY] gi|221729588|gb|ACM32408.1| DNA topoisomerase IV, A subunit [Acidovorax ebreus TPSY] Length = 784 Score = 486 bits (1251), Expect = e-135, Method: Compositional matrix adjust. Identities = 263/692 (38%), Positives = 397/692 (57%), Gaps = 46/692 (6%) Query: 30 YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK-------KSARIVGEV 82 YL YALS +K RA+PD+ DG KPV RRI++AM MGL + + KSAR+VG+V Sbjct: 29 YLEYALSVVKGRALPDVCDGLKPVQRRILYAMDRMGLGYSGPNRNVAAKPVKSARVVGDV 88 Query: 83 IGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAEL 142 +G+ HPHGDQS YD+LVRLAQ F QRYPLI GQGNFG+ DGD AAA RYTEAR+T++A L Sbjct: 89 LGRFHPHGDQSAYDALVRLAQDFNQRYPLIDGQGNFGSRDGDGAAAMRYTEARLTRIAGL 148 Query: 143 ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEA 202 +L +D VDF Y+ EP P++ P L NG SGIAVG+AT IPSHN++E+ +A Sbjct: 149 LLDEIDMGTVDFVPNYDGSTQEPRQLPARLPFALLNGASGIAVGLATEIPSHNLREVADA 208 Query: 203 ALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVG 262 +AL+ P++S E+L + GPD+P GG I+ + I ++YR GRG +VRARW +E++ Sbjct: 209 CVALVKKPQLSDEELFALVPGPDYPGGGQIISTDADIQDAYRTGRGSLKVRARWKIEDLA 268 Query: 263 RGSWCIVVTEIPYQVQKSRLIEKIAELIIAK------------------RIPLLEDIRDE 304 RG W +VVTE+P V +++E+I EL K + LL+ +RDE Sbjct: 269 RGQWQMVVTELPPGVSAQKVLEEIEELTNPKVKTGKKALTQEQTQLKAALLALLDGVRDE 328 Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362 S++D VR+V+ PK + L+ ++ + +ET P+N+ ++ + P L +L+ Sbjct: 329 SSKDAPVRLVIEPKTGKVPQQDLITALLAHTSLETSAPINLTMVGLDGRPVQKSLREMLQ 388 Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422 EW+ R+ + RRS R+ + R+ IL+G + LNIDE+IAIIR D+PK +++RF Sbjct: 389 EWIDFRQTTITRRSQHRLDKVLDRIHILEGRQLVLLNIDEVIAIIRQADEPKAALIARFH 448 Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482 L++ Q + IL +RLR L +LE +I+ EL L E+ K++ +L + +A EI Sbjct: 449 LSDRQAEDILEIRLRQLARLEAIKIEQELKELRDEQGKLEDILANPASLRRLMAKEIEAD 508 Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542 ++F + RRT +A+K + + + EP+TVV+S +GW+R+ + H + + Sbjct: 509 AKLFGDA-----RRTLI----QAEKKAVAEVKVLDEPVTVVVSEKGWVRARQGHGHEAGS 559 Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602 FK GD L T D +++ ++G+ Y++ +L GRG G+ I LI+L Sbjct: 560 FAFKSGDGLYGTFECRTVDTLIVFGSNGRVYSVAVSSLPGGRGDGQPITTLIELEAGTQP 619 Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGD 659 V F + LL+ S G F+ + A R GK F+ + E++ +G Sbjct: 620 VHYFAGPANAALLLAGSGGYGFLSTVEHMTARNRGGKAFVNLGEGERLCRPSHAAFTSGS 679 Query: 660 -------HVAVVGENRKLLIFSIDQIPEMSRG 684 HV ++L F I ++ M +G Sbjct: 680 QPLAPATHVCCASVGGRVLTFEIAELKLMEKG 711 >gi|167625556|ref|YP_001675850.1| DNA topoisomerase IV subunit A [Shewanella halifaxensis HAW-EB4] gi|167355578|gb|ABZ78191.1| DNA topoisomerase IV, A subunit [Shewanella halifaxensis HAW-EB4] Length = 755 Score = 486 bits (1251), Expect = e-135, Method: Compositional matrix adjust. Identities = 277/755 (36%), Positives = 439/755 (58%), Gaps = 27/755 (3%) Query: 6 ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65 +S++ L + V+ + LR EE YL Y++ I +RA+P + DG KPV RRII+AMSE+G Sbjct: 1 MSDAIDLSLDGVEQMPLRRFTEEAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELG 60 Query: 66 LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124 L + KKSAR VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D Sbjct: 61 LSAQSKHKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPK 120 Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184 S AA RYTEAR+++ +E++L + + VD+ ++ EP+V P++ P++L NG +GIA Sbjct: 121 SFAAMRYTEARLSKFSEVLLSELGQGTVDWGVNFDGTMKEPLVLPARLPHILLNGITGIA 180 Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244 VGMAT +P HN +E+ A + L+DNP+ + +L+E++ GPD+PT I+ I + Y+ Sbjct: 181 VGMATDVPPHNAKELVGACVELLDNPKADLARLMEFVPGPDYPTEAEIITPAADITKIYQ 240 Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304 GRG + RA + VE + IV+T +P+Q +++E+IA + AK++P++ D+RDE Sbjct: 241 TGRGSIKARAVYTVE-----NGEIVITALPHQASSGKILEQIASQMQAKKLPMVTDLRDE 295 Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362 S + VR+++ P++ +D D LM +F +D++ + +N+NVL + PQV L +L Sbjct: 296 SDHESPVRMIIVPRSNRVDCDQLMAHLFATTDLQKSYRVNLNVLGLNGRPQVKGLLELLT 355 Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422 EWL R + RR +R+ I R+ IL L+IA+LNIDE+I IIR D PK ++SRF+ Sbjct: 356 EWLTFRMTTVKRRLEYRLDKILARLHILDALMIAFLNIDEVIEIIRYNDDPKAELISRFA 415 Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482 L++ Q DAIL+L+LR L KLEE++IK E L AE++K+ LL+S ++ I Sbjct: 416 LSDKQADAILDLKLRHLAKLEEFKIKGEQSELEAERDKLQLLLSSERRMKTLIK------ 469 Query: 483 KEIFSKSTDLG-RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS 541 KE+ D G RR+ E + + KA QQ ++ E +TVV+S +GW+R K H VD Sbjct: 470 KELIKDGEDYGDERRSPLVERTES-KALTQQELVAVESVTVVLSEKGWVRCAKGHEVDGQ 528 Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD 601 +L +K GDS + + + + T G+A+ L S R GE I +L Sbjct: 529 SLSYKAGDSFLRSAQGRSNQPSVFIDTSGRAFATDTHTLPSARSQGEPITTRFNLAPGTT 588 Query: 602 IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH- 660 + + D L+ S G FI ++++ + GK L + + K+ L KV Sbjct: 589 MEHLLLSDDEQCYLLASDAGYGFICANKDMVSRNKAGKALLSLPANAKVLLPQKVDKSKP 648 Query: 661 ---VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISD----VICFKICEGLTWID 713 +A+ E R +L+FS+D +P++S+GKG ++ + ++ + T + Sbjct: 649 QSILAITNEGR-MLLFSLDALPQLSKGKGNKIIGIPGERAKNREELLLHLNVIPEDTAVT 707 Query: 714 --SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746 + R +DL + G+RG G+ +P+G R Sbjct: 708 LWAGKRKLTLKPSDLEHYRGERGRRGAKLPRGLQR 742 >gi|121593434|ref|YP_985330.1| DNA topoisomerase IV subunit A [Acidovorax sp. JS42] gi|120605514|gb|ABM41254.1| DNA topoisomerase IV subunit A [Acidovorax sp. JS42] Length = 784 Score = 486 bits (1251), Expect = e-135, Method: Compositional matrix adjust. Identities = 264/692 (38%), Positives = 396/692 (57%), Gaps = 46/692 (6%) Query: 30 YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK-------KSARIVGEV 82 YL YALS +K RA+PD+ DG KPV RRI++AM MGL + + KSAR+VG+V Sbjct: 29 YLEYALSVVKGRALPDVCDGLKPVQRRILYAMDRMGLGYSGPNRNVAAKPVKSARVVGDV 88 Query: 83 IGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAEL 142 +G+ HPHGDQS YD+LVRLAQ F QRYPLI GQGNFG+ DGD AAA RYTEAR+T++A L Sbjct: 89 LGRFHPHGDQSAYDALVRLAQDFNQRYPLIDGQGNFGSRDGDGAAAMRYTEARLTRIAGL 148 Query: 143 ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEA 202 +L +D VDF Y+ EP P++ P L NG SGIAVG+AT IPSHN++E+ +A Sbjct: 149 LLDEIDMGTVDFVPNYDGSTQEPRQLPARLPFALLNGASGIAVGLATEIPSHNLREVADA 208 Query: 203 ALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVG 262 +AL+ P++S E+L + GPD+P GG I+ + I ++YR GRG +VRARW +E++ Sbjct: 209 CVALVKKPQLSDEELFALVPGPDYPGGGQIISTDADIQDAYRTGRGSLKVRARWKIEDLA 268 Query: 263 RGSWCIVVTEIPYQVQKSRLIEKIAELIIAK------------------RIPLLEDIRDE 304 RG W +VVTE+P V +++E+I EL K + LL+ +RDE Sbjct: 269 RGQWQMVVTELPPGVSAQKVLEEIEELTNPKVKTGKKALTQEQTQLKAALLALLDGVRDE 328 Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362 S++D VR+V+ PK + L+ ++ + +ET P+N+ ++ + P L +L+ Sbjct: 329 SSKDAPVRLVIEPKTGKVPQQDLITALLAHTSLETSAPINLTMVGLDGRPVQKSLREMLQ 388 Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422 EW+ R+ + RRS R+ + R+ IL+G + LNIDE+IAIIR D+PK +++RF Sbjct: 389 EWIDFRQTTITRRSQHRLDKVLDRIHILEGRQLVLLNIDEVIAIIRQADEPKAALIARFH 448 Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482 L++ Q + IL +RLR L +LE +I+ EL L E+ K++ +L N + V Sbjct: 449 LSDRQAEDILEIRLRQLARLEAIKIEQELKELRDEQGKLEDILA------NPASLRRLMV 502 Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542 KEI + + G R T + A+K + + + EP+TVV+S +GW+R+ + H + + Sbjct: 503 KEIEADAKLFGDARRTLIQ---AEKKAVAEVKVLDEPVTVVVSEKGWVRARQGHGHEAGS 559 Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602 FK GD L T D +++ ++G+ Y++ +L GRG G+ I LI+L Sbjct: 560 FAFKSGDGLYGTFECRTVDTLIVFGSNGRVYSVAVSSLPGGRGDGQPITTLIELEAGTQP 619 Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGD 659 V F + LL+ S G F+ + A R GK F+ + E++ +G Sbjct: 620 VHYFAGPANAALLLAGSGGYGFLSTVEHMTARNRGGKAFVNLGEGERLCRPSHAAFTSGS 679 Query: 660 -------HVAVVGENRKLLIFSIDQIPEMSRG 684 HV ++L F I ++ M +G Sbjct: 680 QPLAPATHVCCASVGGRVLTFEIAELKLMEKG 711 >gi|332994706|gb|AEF04761.1| DNA topoisomerase IV subunit A [Alteromonas sp. SN2] Length = 768 Score = 485 bits (1248), Expect = e-134, Method: Compositional matrix adjust. Identities = 268/745 (35%), Positives = 431/745 (57%), Gaps = 25/745 (3%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 + V+ + LR E+ YL Y++ I +RA+P + DG KPV RRII+AMS++GL A +KK Sbjct: 10 DGVEQLPLRRFTEDAYLNYSMYVIMDRALPHIADGLKPVQRRIIYAMSDLGLSANAKYKK 69 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTE 133 SAR VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S AA RYTE Sbjct: 70 SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 129 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 A++++ +E++L + + VD+ ++ EP V P++ P++L NG +GIAVGMAT IP Sbjct: 130 AKLSRFSEVLLDELGQGTVDWTPNFDGTLEEPCVLPARLPHILLNGVTGIAVGMATDIPP 189 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HNV+E+ A L+DN + + +LE++ GPD+PT ++ + I + Y GRG ++R Sbjct: 190 HNVRELAYACAMLLDNSKAELSDVLEHVNGPDYPTEAEVITPKADIRKLYETGRGSIKMR 249 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRI 311 A + EE G IVVT +P+Q +++E+IA + AK++P++ D+RDES + R+ Sbjct: 250 AVFH-EENGD----IVVTALPHQASGGKILEQIAGQMQAKKLPMVSDLRDESDHENPTRL 304 Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371 ++ P++ +D LM+ +F +D+E + +N+N++ + P+V L IL EWL +R+E Sbjct: 305 LITPRSNRIDTAQLMQHLFATTDLEKNYRVNLNMIGLDGRPKVKDLRTILSEWLVYRKET 364 Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431 + RR +R+ + R+ IL+GLLIA+LNIDE+I IIR +KPK ++SRFSL++ Q +AI Sbjct: 365 VTRRLQYRLDKVLARLHILEGLLIAFLNIDEVIEIIRTYEKPKQELISRFSLSDKQAEAI 424 Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491 L L+LR L KLEE +IK E D L AE++K+ +LL S ++ I KEI + + Sbjct: 425 LELKLRHLAKLEEMKIKGEQDELAAERDKLQTLLGSDRRLKTLIK------KEILADAEK 478 Query: 492 LG-RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDS 550 G RR+ E A KA ++ ++ E +TVV+S +GW R K + +D L +K GD Sbjct: 479 YGDDRRSPIVERGEA-KALSEKELVPAESVTVVLSEKGWARCAKGYDIDAEGLSYKAGDG 537 Query: 551 LKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDS 610 + + + + + G+ ++ A L S R GE + L + + Sbjct: 538 YLSSAEGKSNQPAVFMDSSGRTFSCDAHGLPSARSQGEPLTGRFALVGGESFEHVIMASD 597 Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTFL---KVSSEEKMKLVVKVTGDHVAVVGEN 667 K LV S G F+ ++++ + GK +L K + K K V D + Sbjct: 598 EAKFLVGSDAGYGFVGTFKDMVSKNKAGKAYLSLPKAAKVMKPKPVTNPESDWCLTISNE 657 Query: 668 RKLLIFSIDQIPEMSRGKGVRLQSYKDGGISD-----VICFKICEGLTWIDSAG-RSYNR 721 ++L+F + +P + +GKG +L + + + +G + +AG R+ Sbjct: 658 GRMLLFPLKDLPSLGKGKGNKLINIPGAKAQSREEFVTVLAVVPDGASLKVTAGKRNMTL 717 Query: 722 SENDLLGWLGKRGGVGSLVPKGFPR 746 S +DL + G+RG G+ +P+G R Sbjct: 718 SASDLEHYYGERGRRGNKLPRGLQR 742 >gi|186476876|ref|YP_001858346.1| DNA topoisomerase IV subunit A [Burkholderia phymatum STM815] gi|184193335|gb|ACC71300.1| DNA topoisomerase IV, A subunit [Burkholderia phymatum STM815] Length = 773 Score = 485 bits (1248), Expect = e-134, Method: Compositional matrix adjust. Identities = 268/690 (38%), Positives = 413/690 (59%), Gaps = 36/690 (5%) Query: 27 EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86 E YL YA+S +K RA+PD+ DG KPV RRI++AM+EMGL A KSAR+VG+V+GK Sbjct: 27 ERAYLDYAVSVVKGRALPDVCDGQKPVQRRILYAMNEMGLGDNAKPVKSARVVGDVLGKY 86 Query: 87 HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQG 146 HPHGDQS YD+LVRLAQ F RYPLI GQGNFG+ DGD AAA RYTEAR+T +A+L+L Sbjct: 87 HPHGDQSAYDALVRLAQDFSMRYPLIDGQGNFGSRDGDGAAAMRYTEARLTPIAKLLLDE 146 Query: 147 VDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALAL 206 +D+ VDF Y+ EP + P++ P +L NG SGIAVG+AT IPSHN++E+ AA+A+ Sbjct: 147 IDQGTVDFMPNYDGSFEEPKLLPARLPFVLLNGASGIAVGLATEIPSHNLREVAAAAVAM 206 Query: 207 IDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSW 266 I +P+I+ +L++ + GPDFP GG I+ S I ++Y GRG +VRARW +E++ RG W Sbjct: 207 IRHPKITHAELMQLVPGPDFPGGGQIISSEAEISQAYETGRGSLKVRARWKIEDLARGQW 266 Query: 267 CIVVTEIPYQVQKSRLIEKIAE-----LIIAKR-------------IPLLEDIRDESAED 308 +V+TE+P +++E+I E + + K+ + LL+ +RDES +D Sbjct: 267 QLVITELPPNTSGQKVLEEIEEQTNPKIKLGKKSLTPEQLQTKQTLLGLLDAVRDESGKD 326 Query: 309 --VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366 VR+V PK+ +D + ++ + +E+ LN+ ++ P+ + +L EW+ Sbjct: 327 APVRLVFEPKSSRIDQTEFVNTLLAHTSLESNATLNLVMVGADGRPRQKGIGEMLHEWIG 386 Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426 R + RRS R+ ++ R+ IL+G +I +LNIDE+I IIR ++PK ++ F L++ Sbjct: 387 FRFTTVTRRSQHRLNKVNERIHILEGRMIVFLNIDEVIRIIRESEEPKAALIEAFKLSDR 446 Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486 Q + IL +RLR L +LE +I+ EL L EK K++ LL S + A + +KEI Sbjct: 447 QAEDILEIRLRQLARLEAIKIEKELSELRDEKAKLEELLGS------EPAMKRLLIKEIE 500 Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546 + + G R T + + +AT +A + EP+TVV+S +GW+R+LK H +D + FK Sbjct: 501 ADAKQYGDDRRTL--IQQEKRATF-EARVVDEPVTVVVSQKGWVRALKGHGLDPAGFTFK 557 Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606 GD L A T D ++ + G+ Y++ L GRG G + LI+L ++ + Sbjct: 558 AGDGLYAAFQCRTPDMLIAWGSKGRVYSVAVSQLPGGRGDGVPVTSLIELESGTHLMHYY 617 Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV----SSEEKMKLVVKVTGDHVA 662 + LL+ SS G FI + ++++ + GK F+ + + M ++ T VA Sbjct: 618 AASAEQALLLASSNGFGFIAKVGDMVSRVKAGKAFMTIDEGATPLAPMPMLPDAT--QVA 675 Query: 663 VVGENRKLLIFSIDQIPEMS-RGKGVRLQS 691 + +LL+F +D++ +S G+GV L + Sbjct: 676 CLSGGGRLLVFGLDEMKTLSGGGRGVILMA 705 >gi|330983687|gb|EGH81790.1| DNA topoisomerase IV subunit A [Pseudomonas syringae pv. lachrymans str. M301315] Length = 750 Score = 484 bits (1247), Expect = e-134, Method: Compositional matrix adjust. Identities = 275/755 (36%), Positives = 446/755 (59%), Gaps = 27/755 (3%) Query: 6 ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65 +S++ + + V+ SL E YL Y++ I +RA+P + DG KPV RRI++AMSE+G Sbjct: 1 MSDTTQMSMDGVERRSLADFTESAYLNYSMYVILDRALPHIGDGLKPVQRRIVYAMSELG 60 Query: 66 LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124 LD + KKSAR VG+V+GK HPHGD + Y+++V +AQPF RY L+ GQGN+G D Sbjct: 61 LDADSKHKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPDDPK 120 Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184 S AA RYTEAR+++ AE +L + + VDF ++ EP+ P++ PN+L NGTSGIA Sbjct: 121 SFAAMRYTEARLSRYAETMLDELGQGTVDFGPNFDGTMQEPLTLPARLPNILLNGTSGIA 180 Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244 VGMAT +P HN++E+ A + LID P S+E LLE++ PD+PT I+ S + + Y Sbjct: 181 VGMATDVPPHNLREVAAACIRLIDQPTASLENLLEHVKAPDYPTSAEIISSPADLHKVYS 240 Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304 GRG R+RA + VE+ +V+T +P+QV ++++E+IA + AK++P++ D+RDE Sbjct: 241 TGRGSIRMRAVYNVED-----GDVVITGLPHQVSGAKVLEQIAAQMQAKKLPMVTDLRDE 295 Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362 S + RIV+ P++ +D LM+ +F +++E+ + +NMNV+ + PQV L +L Sbjct: 296 SDHENPCRIVIVPRSNRVDTQGLMDHLFATTELESTYRVNMNVIGLDGRPQVKDLRTMLS 355 Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422 EWL +R + RR +R+ +D+R+ +L+GLLIA+LN+DE+I IIR E+ P+ +++RF Sbjct: 356 EWLQYRITTVRRRLQYRLDKVDKRLHLLEGLLIAFLNMDEVIHIIRTEEHPRVALMARFE 415 Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482 L+E Q D IL RLR L +LEE +I+ E + LL E+E + L S Q+ +RE Sbjct: 416 LSEAQADYILETRLRQLARLEEMKIRGEQEELLRERETLAGYLGS----ETQLKGLVRE- 470 Query: 483 KEIFSKSTDLG-RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS 541 EI + + G RR+ E + A KA + ++ EP+TVV+S +GW+R+ K VD S Sbjct: 471 -EIMADADYYGDDRRSPLVERAEA-KALSESELMPSEPVTVVLSEKGWVRAGKGSDVDGS 528 Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD 601 L +K GD+ K + + + + + G++++L A L S R GE + + Sbjct: 529 TLSYKAGDTFKTSASGRSNQFAVFIDSTGRSFSLAAHTLASARTQGEPLSGKLTGQPGAS 588 Query: 602 IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH- 660 + D ++ S G F+V+ ++ A + GK + +S K+ + + V+ Sbjct: 589 YEWVVMPDDEALYVLASDAGYGFLVKGEDLQAKNKNGKALINLSENSKVLMPLPVSNADE 648 Query: 661 ---VAVVGENRKLLIFSIDQIPEMSRGKG---VRLQSYKDGGISDVIC--FKICEGLTWI 712 VA+ E R LL+F ++P++ +GKG + + S K +++ + EG + + Sbjct: 649 QWIVALTSEGR-LLMFKASELPQLGKGKGNKIISVPSDKAQAREELMTQLLVLDEGKSVV 707 Query: 713 DSAG-RSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746 ++G R+ DL + RG GS++P+G+ + Sbjct: 708 ITSGKRTMTLKPGDLESYKSMRGKRGSMLPRGYQK 742 >gi|326316176|ref|YP_004233848.1| DNA topoisomerase IV subunit A [Acidovorax avenae subsp. avenae ATCC 19860] gi|323373012|gb|ADX45281.1| DNA topoisomerase IV, A subunit [Acidovorax avenae subsp. avenae ATCC 19860] Length = 785 Score = 484 bits (1247), Expect = e-134, Method: Compositional matrix adjust. Identities = 269/694 (38%), Positives = 395/694 (56%), Gaps = 50/694 (7%) Query: 30 YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK-------KSARIVGEV 82 YL YALS +K RA+PD+ DG KPV RRI+ AM MGL +G + KSAR+VG+V Sbjct: 30 YLEYALSVVKGRALPDVCDGMKPVQRRILFAMERMGLAYGGPTRNVPAKPVKSARVVGDV 89 Query: 83 IGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAEL 142 +G+ HPHGDQS YD+LVRLAQ F QRYPLI GQGNFG+ DGD AAA RYTEAR+T++A L Sbjct: 90 LGRFHPHGDQSAYDALVRLAQDFSQRYPLIDGQGNFGSRDGDGAAAMRYTEARLTRIASL 149 Query: 143 ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEA 202 +L +D+ V F Y+ EP P++ P L NG SGIAVG+AT IPSHN++EI +A Sbjct: 150 LLDEIDQGTVGFVPNYDGSTEEPRQLPARLPFALLNGASGIAVGLATEIPSHNLREIADA 209 Query: 203 ALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVG 262 +AL+ NP+++ E+L + GPD+P GG I+ S I ++YR GRG +VRARW +E++ Sbjct: 210 CVALVKNPKLADEELAAMVPGPDYPGGGQIISSPGDIQDAYRTGRGSLKVRARWKIEDLA 269 Query: 263 RGSWCIVVTEIPYQVQKSRLIEKIAEL------------------IIAKRIPLLEDIRDE 304 RG W +VVTE+P V +++E+I EL + A + +L+ +RDE Sbjct: 270 RGQWQMVVTELPPGVSAQKVLEEIEELTNPKVKAGKKALSQEQTQLKATVLGVLDVVRDE 329 Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362 S++D VRIV PK + L+ ++ + +ET P+N+ ++ + P L +L+ Sbjct: 330 SSKDAPVRIVFEPKTGKVPQQELITTLLAHTSLETSAPINLTMVGLDGKPVQKSLRRMLE 389 Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422 EW+A R++ + RRS R+ + R+ IL+G LNIDE+IAIIR D+PK ++ RF Sbjct: 390 EWIAFRQQTITRRSQHRLAKVLDRIHILEGRQTVLLNIDEVIAIIRTADEPKAALIERFR 449 Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482 L++ Q + IL +RLR L +LE +I+ EL L E+ K++ +L N + V Sbjct: 450 LSDRQAEDILEIRLRQLARLEAIKIEQELKELREEQGKLEDILA------NPASLRRLMV 503 Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542 KEI + + R T + ADK + + EP+TVV+S +GW+R+ + H D Sbjct: 504 KEIEADAKQFADARRTLIQ---ADKRATAEVKVVDEPVTVVVSQKGWVRARQGHGHDAGT 560 Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602 FK GD+L T D ++ ++G+ Y++ L RG G+ I LI+L Sbjct: 561 FAFKSGDALYGTFECRTVDTLIAFGSNGRVYSVAVSQLPGARGDGQPITTLIELEAGTQP 620 Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM------------ 650 V F + LL+ S G FI + A R GK F+ + E++ Sbjct: 621 VHYFAGPANAALLLAGSGGYGFIAAVEHMTARNRGGKAFVSLGEGEQLCRPSHAAFTSGS 680 Query: 651 KLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRG 684 + +V T HV ++L F I ++ +M+ G Sbjct: 681 QALVPAT--HVCCASAGGRILTFEITELKQMANG 712 >gi|298484933|ref|ZP_07003031.1| Topoisomerase IV subunit A [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298160487|gb|EFI01510.1| Topoisomerase IV subunit A [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 753 Score = 484 bits (1246), Expect = e-134, Method: Compositional matrix adjust. Identities = 271/764 (35%), Positives = 447/764 (58%), Gaps = 33/764 (4%) Query: 6 ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65 +S+S L + V+ SL E+ YL Y++ I +RA+P + DG KPV RRII+AMSE+G Sbjct: 1 MSDSLDLSLDGVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELG 60 Query: 66 LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124 L A KKSAR VG+V+GK HPHGD + Y+++V +AQPF RY L+ GQGN+G D Sbjct: 61 LGADAKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPDDPK 120 Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184 S AA RYTEAR+++ +E++L + + D+ ++ EP V P++ PN+L NGT+GIA Sbjct: 121 SFAAMRYTEARLSRYSEVLLSELGQGTADWVPNFDGTLEEPAVLPARLPNILLNGTTGIA 180 Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244 VGMAT +P HN++E+ A + L+D+P+ ++ +L E+I+GPD+PT I+ R +++ Y Sbjct: 181 VGMATDVPPHNLREVASACVHLLDDPKATVPELCEHILGPDYPTEAEIITPRADLLKIYE 240 Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304 GRG R+RA + +E+ IVVT +P+QV ++++E+IA + AK++P++ D+RDE Sbjct: 241 TGRGSVRMRAVYRIED-----GDIVVTSLPHQVSGAKVLEQIAAQMQAKKLPMVADLRDE 295 Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362 S + RIV+ P++ ++ D LM+ +F +++E+ + +N+N++ + PQ+ L +L Sbjct: 296 SDHENPCRIVIIPRSNRVELDELMQHLFATTELESSYRVNINIIGLDGKPQLKNLKTLLG 355 Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422 EWL R + RR FR+ ++ R+ +L GLL AYLN+DE+I IIR + PK +++RF Sbjct: 356 EWLTFRIGTVRRRLQFRLDKVEHRLHLLDGLLTAYLNLDEVIHIIRTAEHPKAELIARFG 415 Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482 L+E Q D IL+ RLR L +LEE +++SE + L E+ K+ +LL S + + E+ Sbjct: 416 LSEIQADYILDTRLRQLARLEEMKLRSEQEALRKEQAKLLALLGSESKLRKLVRAELIAD 475 Query: 483 KEIFSKSTDLGRRRTTFCEVSRAD-KATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS 541 E + + RR+ V+RA+ KA + ++ EP+TVV+S +GW+R K H +D + Sbjct: 476 AETYGDN-----RRSPI--VARAEAKALSENELMPTEPVTVVLSEKGWVRCAKGHDIDAT 528 Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD 601 L +K GD K + + + + + G++Y++ A L S RG GE + + Sbjct: 529 GLSYKAGDGFKTSSIGRSNQFAVFIDSTGRSYSVAAHTLPSARGQGEPLTGKLQPPPGAT 588 Query: 602 IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--- 658 + + ++ S G F+V+ ++ A + GK L + + K+ L V Sbjct: 589 FECVLMPEDDALYVIASDAGYGFVVKGEDLQAKNKAGKALLSLPNGAKVILPRPVPDREQ 648 Query: 659 DHVAVVGENRKLLIFSIDQIPEM----------SRGKGVRLQSYKDGGISDVICFKICEG 708 + +A V +LL+F I +P++ G R+ S ++ ++D+ I +G Sbjct: 649 NWLAAVTTEGRLLVFKISDLPQLGKGKGKGNKIIGIPGERVAS-REEYVTDLAV--IAQG 705 Query: 709 LTWIDSAG-RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751 T + AG R+ + DL + G+RG G+ +P+GF R L Sbjct: 706 ATLVLQAGKRTLSLKPEDLEHYKGERGRRGNKLPRGFQRVDALL 749 >gi|238021053|ref|ZP_04601479.1| hypothetical protein GCWU000324_00950 [Kingella oralis ATCC 51147] gi|237868033|gb|EEP69039.1| hypothetical protein GCWU000324_00950 [Kingella oralis ATCC 51147] Length = 765 Score = 483 bits (1244), Expect = e-134, Method: Compositional matrix adjust. Identities = 272/737 (36%), Positives = 413/737 (56%), Gaps = 52/737 (7%) Query: 27 EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86 E YL YA+S +K RA+P ++DG KPV RRI+ AM +MGL GA KSAR+VGE++GK Sbjct: 21 ERAYLEYAMSVVKGRALPAVQDGQKPVQRRILFAMKDMGLTHGAKPVKSARVVGEILGKY 80 Query: 87 HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQG 146 HPHGD S Y+++VR+AQ F RYPLI G GNFG+ DGD AAA RYTEAR+T +AEL+L Sbjct: 81 HPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPLAELLLSE 140 Query: 147 VDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALAL 206 +++ VDF Y+ EP P++ P +L NG SGIAVGMAT IPSHN+ E+ +AA+AL Sbjct: 141 INQGTVDFIPNYDGAFEEPESLPARLPMVLLNGASGIAVGMATEIPSHNLGEVAQAAVAL 200 Query: 207 IDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSW 266 + NP ++ L +I PDF G I+ + I + Y G+G RVRAR+ VE++ RG W Sbjct: 201 LKNPALTTADLHHHIPAPDFAGGAHIITPAKDIAQIYETGKGSIRVRARYDVEKLARGQW 260 Query: 267 CIVVTEIPYQVQKSRLIEKIAELIIAK------------------RIPLLEDIRDES--A 306 +VV+E+P ++++ +I E K + LLE +RDES Sbjct: 261 RVVVSELPPNTSSAKILAEIEEQTNPKPKAGKKQLNQDQLNTKKLMLDLLEKVRDESDGE 320 Query: 307 EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366 VR+V PK+ + P+ + ++ + ME +N+ ++ + P L IL+EWL Sbjct: 321 HPVRLVFEPKSSRMQPETFINTLMAQTSMEGNVSVNLVMMGLDNRPAQKNLKTILQEWLD 380 Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426 +R + RR R+ A+++R+ IL G +IA+L+ID++I +IR D+PKP +++ F LTE Sbjct: 381 YRTATVTRRLQHRLDAVEKRIHILDGRMIAFLHIDQVIKVIREADEPKPELMAAFQLTEI 440 Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486 Q + IL +RLR L +LE +I+ EL+ L E + +LL ++ I +KEI Sbjct: 441 QAEDILEIRLRQLARLEGIKIERELNELREEAGSLKTLLGDENEKRKLI------IKEIQ 494 Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546 + + G R T E A++ATL Q + EPIT+++S +GW+R+ H VD + + FK Sbjct: 495 ADAKQFGDARRTLVEA--AERATLTQTTAD-EPITLILSQQGWLRARAGHGVDAAQIAFK 551 Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606 EGD+L+ L T +++ + G++YTL A + GRG G I LI+L +V Sbjct: 552 EGDALQQVLETRTVQPVVVWDSHGRSYTLDAAEIPKGRGDGVPIASLIELPSQASVVALL 611 Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD------- 659 + L+ G FI + ++ + GK L + E V++ D Sbjct: 612 AGAADDYYLLSGCHGYGFIAKLEDLFTRQKAGKAVLTLDDNETALPPVRIANDWLIAPDS 671 Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719 + + N++LL F + ++ M++G+G++L DG + LT Sbjct: 672 RIVLASANKRLLAFPVSEMKIMAKGRGLQLIKLSDGD-----TLALASALT--------- 717 Query: 720 NRSENDLLGWLGKRGGV 736 SE+ L +GKRG + Sbjct: 718 --SEHYTLHIIGKRGAI 732 >gi|298370321|ref|ZP_06981637.1| DNA topoisomerase IV, A subunit [Neisseria sp. oral taxon 014 str. F0314] gi|298281781|gb|EFI23270.1| DNA topoisomerase IV, A subunit [Neisseria sp. oral taxon 014 str. F0314] Length = 769 Score = 483 bits (1244), Expect = e-134, Method: Compositional matrix adjust. Identities = 263/696 (37%), Positives = 398/696 (57%), Gaps = 36/696 (5%) Query: 27 EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86 E YL YA+S +K RA+P++ DG KPV RRI+ AM +MGL GA KSAR+VGE++GK Sbjct: 22 ERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGEILGKY 81 Query: 87 HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQG 146 HPHGD S Y+++VR+AQ F RYPLI G GNFG+ DGD AAA RYTEAR+T +AEL+L Sbjct: 82 HPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAELLLSE 141 Query: 147 VDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALAL 206 +++ VDF Y+ EP+ P++ P +L NG SGIAVGMAT IPSHN+ E+ +AA+AL Sbjct: 142 INQGTVDFVPNYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIPSHNLNEVTQAAIAL 201 Query: 207 IDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSW 266 + P + L++YI PDF GG I+ + + Y G+G RVRAR+ +E++ RG W Sbjct: 202 LKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETGKGSVRVRARYEIEKLARGQW 261 Query: 267 CIVVTEIPYQVQKSRLIEKIAELIIAK------------------RIPLLEDIRDES--A 306 ++VTE+P ++++ +I E K + L++ +RDES Sbjct: 262 RMIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDQLNTKKLMLDLIDRVRDESDGE 321 Query: 307 EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366 VR+V PK+ +D D + ++ + +E +N+ ++ + P L IL+EWL Sbjct: 322 HPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMMGLDNRPAQKNLKTILQEWLD 381 Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426 R + RR FR+ +++R+ IL+G L +L+IDE+I +IR D PK +++ F LTE Sbjct: 382 FRVVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKVIRESDDPKADLMAAFGLTEI 441 Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486 Q + IL +RLR L +LE ++++ EL+ L E+ +++ LL ++ I +KE+ Sbjct: 442 QAEDILEIRLRQLARLEGFKLEKELNELREEQGRLNILLGDENEKRKLI------IKEMQ 495 Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546 + G R T E A +A L Q + EPIT+++S +GWIRS H++DLS FK Sbjct: 496 ADMKQFGDARRTLVE--EAGRAVLTQTTAD-EPITLILSEKGWIRSRAGHNLDLSQTAFK 552 Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606 EGD LK L T +++L + G+ YTL A + GRG G + LI+L + V Sbjct: 553 EGDRLKQTLEGRTVLPVVILDSLGRTYTLDAAEIPGGRGDGVPVSSLIELQNGAKPVAML 612 Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD------- 659 L+ S G FI + +++ + GK + V S E + + V Sbjct: 613 TGQPEQHYLLSGSGGYGFIAKLGDMVGRVKAGKVVMTVDSGETVLPPIAVYASSLINPDC 672 Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDG 695 + + + +LL FSI ++ M +G+G++L S DG Sbjct: 673 KIVLASSDHRLLAFSIGELKVMPKGRGLQLMSLTDG 708 >gi|9623018|gb|AAF90006.1|AF227958_1 DNA topoisomerase IV subunit [Serratia marcescens] Length = 756 Score = 483 bits (1244), Expect = e-134, Method: Compositional matrix adjust. Identities = 274/746 (36%), Positives = 442/746 (59%), Gaps = 23/746 (3%) Query: 12 LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71 L + V+ + L E YL Y++ I + A+P + DG KPV RRII+AMSE+GL A Sbjct: 4 LTHDGVERLPLHTFTENAYLNYSMYVIMDPALPYIGDGLKPVQRRIIYAMSELGLTNSAK 63 Query: 72 FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYR 130 FKKSAR VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S AA R Sbjct: 64 FKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMR 123 Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190 YTE+R+++ AE++L + + VD+ ++ EP + P++ PN+L NGT+GIAVGMAT Sbjct: 124 YTESRLSKYAEVLLAELGQGTVDWIPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATD 183 Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250 IP HNV+E+ AA+AL+D P S++ LLE++ GPDFPT I+ R+ I + Y+ GRG Sbjct: 184 IPPHNVREVAAAAVALLDKPGASLDDLLEFVQGPDFPTEAEIITPRDEIRKIYQSGRGSV 243 Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-- 308 R+RA E+ GS V+T +P+QV ++++E+IA + AK++P++ED+RDES + Sbjct: 244 RMRAVGKKED---GS--AVITALPHQVSGAKVLEQIASQMRAKKLPMVEDLRDESDHENP 298 Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368 R+V+ P++ +D + +M +F +D+E + +NMN++ + P V L IL EWLA+R Sbjct: 299 TRLVIVPRSNRIDLEQVMNHLFATTDLERSYRINMNMIGLDNTPAVKGLVEILTEWLAYR 358 Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQV 428 R+ + RR ++R++ + +R+ IL+GLL+A+LNIDE+I IIR+ED+PKPV++ RF +++ Q Sbjct: 359 RDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIHIIRSEDEPKPVLMQRFGISDTQA 418 Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488 +AIL L+LR L KLEE +I+ E D L E++++ +LL S ++ I EI+ + + Sbjct: 419 EAILELKLRHLAKLEEVKIRGEQDELAKERDQLQALLASERKLNTLIKKEIQADAQTYGD 478 Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548 D RR T E KA + + EP+T+V+S GW+RS K H +D + L +K G Sbjct: 479 --DRLRRLTERAEA----KAMSEHDFVPSEPVTIVLSEMGWVRSAKGHDIDPAGLSYKAG 532 Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608 DS A+ + ++ + + ++ + L S R GE + + I + Sbjct: 533 DSFA-AVRGKSNQVVVFIDSTERSTAVDPMKLPSARRQGEPLTGKLTPPPGATIEQVLMA 591 Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--DHVAVVGE 666 KLL+ S G F+ ++++A R GK + + + +++ G D + + Sbjct: 592 ADDQKLLMASDAGYGFVCTFNDLVARNRAGKVMITLPDNARALPPMEIHGADDMLLSITA 651 Query: 667 NRKLLIFSIDQIPEMSRGKG---VRLQSYKDGGISDVICFKIC---EGLTWIDSAGRSYN 720 ++L+F + +P++S+GKG V + + + D + + + + R Sbjct: 652 AGRMLMFPVADLPQLSKGKGNKIVSIPAAQAAAGEDKLAWLFVLPPQASVTLYVGKRKLT 711 Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPR 746 DL L +RG G+ +P+G R Sbjct: 712 LRPEDLHEDLPERGRKGTQLPRGLQR 737 >gi|225075739|ref|ZP_03718938.1| hypothetical protein NEIFLAOT_00755 [Neisseria flavescens NRL30031/H210] gi|224952905|gb|EEG34114.1| hypothetical protein NEIFLAOT_00755 [Neisseria flavescens NRL30031/H210] Length = 767 Score = 483 bits (1243), Expect = e-134, Method: Compositional matrix adjust. Identities = 264/696 (37%), Positives = 398/696 (57%), Gaps = 36/696 (5%) Query: 27 EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86 E YL YA+S +K RA+P++ DG KPV RRI+ AM +MGL GA KSAR+VGE++GK Sbjct: 25 ERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGEILGKY 84 Query: 87 HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQG 146 HPHGD S Y+++VR+AQ F RYPLI G GNFG+ DGD AAA RYTEAR+T +AEL+L Sbjct: 85 HPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAELLLSE 144 Query: 147 VDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALAL 206 +++ VDF Y+ EP+ P++ P +L NG SGIAVGMAT IPSHN+ E+ +AA+AL Sbjct: 145 INQGTVDFVPNYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIPSHNLNEVTQAAIAL 204 Query: 207 IDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSW 266 + P + L++YI PDF GG I+ + + Y G+G RVRAR+ +E++ RG W Sbjct: 205 LKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETGKGSVRVRARYEIEKLARGQW 264 Query: 267 CIVVTEIPYQVQKSRLIEKIAELIIAK------------------RIPLLEDIRDES--A 306 ++VTE+P ++++ +I E K + L++ +RDES Sbjct: 265 RVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDQLNTKKLMLDLIDRVRDESDGE 324 Query: 307 EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366 VR+V PK+ +D D + ++ + +E +N+ ++ + P L IL+EWL Sbjct: 325 HPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMMGLDNRPAQKNLKTILQEWLD 384 Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426 R + RR FR+ +++R+ IL+G L +L+IDE+I +IR D PK +++ F LTE Sbjct: 385 FRTVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKVIRESDDPKADLMAAFGLTEI 444 Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486 Q + IL +RLR L +LE ++++ EL+ L E+ +++ LL ++ + +KE+ Sbjct: 445 QAEDILEIRLRQLARLEGFKLEKELNELREEQGRLNILLGDENEKRKLM------IKEMQ 498 Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546 + G R T E A +A L Q + EPIT+++S +GWIRS H++DLS FK Sbjct: 499 ADMKQYGDARRTLVE--EAGRAVLTQTTAD-EPITLILSEKGWIRSRAGHNLDLSQTAFK 555 Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606 EGD LK L T +++L + G+ YTL A + GRG G I LI+L + + Sbjct: 556 EGDRLKQTLEGRTVLPVVILDSLGRTYTLDAAEIPGGRGDGVPISSLIELQNGAKPIAML 615 Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD------- 659 L+ S G FI + +++ + GK + V S E + V V Sbjct: 616 TGLPEQHYLLSGSGGYGFIAKLGDMVGRVKAGKVVMTVDSGETVLPPVAVYASSLINPDC 675 Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDG 695 V + + +LL FSI ++ M +G+G++L S DG Sbjct: 676 KVVLASSDHRLLAFSIGELKVMPKGRGLQLMSLTDG 711 >gi|294789295|ref|ZP_06754533.1| DNA topoisomerase IV, A subunit [Simonsiella muelleri ATCC 29453] gi|294482720|gb|EFG30409.1| DNA topoisomerase IV, A subunit [Simonsiella muelleri ATCC 29453] Length = 759 Score = 483 bits (1242), Expect = e-134, Method: Compositional matrix adjust. Identities = 270/736 (36%), Positives = 421/736 (57%), Gaps = 52/736 (7%) Query: 27 EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86 E YL YA+S +K RA+P ++DG KPV RRI+ AM +MGL GA KSAR+VGE++GK Sbjct: 13 ERAYLEYAMSVVKGRALPAVQDGQKPVQRRILFAMKDMGLVHGAKPVKSARVVGEILGKY 72 Query: 87 HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQG 146 HPHGD S Y+++VR+AQ F RYPLI G GNFG+ DGD AAA RYTEA +T +AEL+L Sbjct: 73 HPHGDSSAYEAMVRMAQDFTLRYPLIDGVGNFGSRDGDGAAAMRYTEACLTPLAELLLSE 132 Query: 147 VDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALAL 206 +++ VDF Y+ EPV P++ P +L NG SGIAVGMAT IPSHN+ E+ +AA+AL Sbjct: 133 INQGTVDFVPNYDGAFDEPVSLPARLPMVLLNGASGIAVGMATEIPSHNLNEVTQAAVAL 192 Query: 207 IDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSW 266 + P + + L+++I PDF GG I+ + + Y G+G RVRAR+ ++++ RG W Sbjct: 193 LKKPSLQLTDLMDFIPAPDFAGGGHIITPTKDLQHIYETGKGSLRVRARYQIDKMARGQW 252 Query: 267 CIVVTEIPYQVQKSRLIEKIAELIIAK------------------RIPLLEDIRDESAED 308 ++V+E+P ++++ +I E K + L+E +RDES + Sbjct: 253 RVIVSELPPNTSAAKILAEIEEQTNPKPKAGKKQLNQDQLNTKKLMLDLIEKVRDESDSE 312 Query: 309 --VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366 VR+V PK+ ++P+ + ++ + +E +N+ ++ M P L IL+EWL Sbjct: 313 HPVRLVFEPKSSRIEPEHFVNTLMAQTSLEGNVSVNLVMMGMDNRPAQKNLKTILQEWLD 372 Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426 +R + RR R+ A+++R+ IL G +IA+L+IDEII +IR D+PK ++ +F LTE Sbjct: 373 YRVATVTRRLQHRLHAVEKRIHILDGRMIAFLHIDEIIRVIRESDEPKQDLIRQFGLTEI 432 Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486 Q D IL +RLR L +LE ++KSEL+ L E+ + +LL+ + I +KE+ Sbjct: 433 QADDILEIRLRQLARLEGVKLKSELNELREEQGSLKNLLSDEDAKKKLI------IKEMK 486 Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546 + + G R T E A++ATL Q + EPIT+++S +GWIR+ H VDLS + FK Sbjct: 487 ADAKQFGDARRTLVEA--AERATLTQTTAD-EPITLILSQKGWIRARAGHDVDLSQIAFK 543 Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606 EGD L+ L T +++L G++YT+ ++ GRG G + LI++ + Sbjct: 544 EGDDLQQVLQTRTVQSVVVLDDLGRSYTINPADVPKGRGDGVPLGSLIEIQAGAKALAML 603 Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV-------TGD 659 + L+ S G FI + ++ + ++ GKT + + + E + V V Sbjct: 604 SGSNDDHYLLAHSGGYGFICKLEDLHSRSKTGKTVMMLEAGETVLPPVPVYLSALINPDC 663 Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719 V + E ++LL F I ++ M++G+G++L + G +I + Sbjct: 664 KVVLATEQKRLLAFPIGEMKIMAKGRGLQLIRLQ--GNDKLILINVL------------- 708 Query: 720 NRSENDLLGWLGKRGG 735 ++EN L +GKRGG Sbjct: 709 -KTENCTLDIVGKRGG 723 >gi|299530846|ref|ZP_07044261.1| DNA topoisomerase IV subunit A [Comamonas testosteroni S44] gi|298721362|gb|EFI62304.1| DNA topoisomerase IV subunit A [Comamonas testosteroni S44] Length = 796 Score = 483 bits (1242), Expect = e-134, Method: Compositional matrix adjust. Identities = 265/716 (37%), Positives = 400/716 (55%), Gaps = 60/716 (8%) Query: 30 YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF-------GAAFKKSARIVGEV 82 YL YALS +K RA+PD+ DG KPV RRI++AM MGL + A KSAR+VG+V Sbjct: 28 YLEYALSVVKGRALPDVSDGLKPVQRRILYAMDRMGLGYSGPNGNTAAKPVKSARVVGDV 87 Query: 83 IGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAEL 142 +G+ HPHGDQS YD+LVR+AQ F QRYPL+ GQGNFG+ DGD AAA RYTEAR++++ L Sbjct: 88 LGRFHPHGDQSAYDALVRMAQDFNQRYPLVDGQGNFGSRDGDGAAAMRYTEARLSKITGL 147 Query: 143 ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEA 202 +L +D VDF Y+ EP P++ P L NG SGIAVG+AT IPSHN+ E+ A Sbjct: 148 LLDEIDMGTVDFVPNYDGSTQEPKQLPARLPFSLLNGASGIAVGLATEIPSHNLPEVAAA 207 Query: 203 ALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVG 262 +ALI P++ E+LL I GPD+P GG I+ S I ++YR GRG +VRARW +EE+ Sbjct: 208 CVALIKKPQLPEEELLALIPGPDYPGGGQIISSSSDIADAYRTGRGSLKVRARWKIEELA 267 Query: 263 RGSWCIVVTEIPYQVQKSRLIEKIAEL------------------IIAKRIPLLEDIRDE 304 RG W +VVTE+P V +++E+I ++ + A + +L+ +RDE Sbjct: 268 RGQWQLVVTELPPGVSAQKVLEEIEDITNPKVKTGKKALSQEQTQLKASMLAVLDCVRDE 327 Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362 S++D VRIV PK + L+ ++ + +E+ +N+ + + P L +L+ Sbjct: 328 SSKDAPVRIVFEPKTGKIPQSELITALLAHTSLESSSSINLTSIGLDGRPVQKSLRQMLE 387 Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422 EW+A R + + RRS R++ + R+ IL+G LNID++IAIIR D+PK ++ F+ Sbjct: 388 EWIAFRFQTVTRRSQHRLEKVLDRIHILEGRQAVLLNIDKVIAIIRASDEPKQALIDAFN 447 Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482 L+E Q + IL +RLR L +LE +I+ EL L +E+ K++ +L S + ++ C Sbjct: 448 LSERQAEDILEIRLRQLARLEAIKIEQELKELRSEQGKLEDILGS-EATMRRLIC----- 501 Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542 KEI + + G R T K + + + EP TV+IS +GW+R+ + H VD Sbjct: 502 KEIEADAKTFGDARRTLIHEE---KKVVAEVKVVDEPTTVIISEKGWVRTRQGHGVDAGT 558 Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602 L FK GDSL T D++L ++G+ Y++P L GRG G+ + +I+L + Sbjct: 559 LSFKAGDSLYGTFECRTVDQLLAFGSNGRVYSVPVSALPGGRGDGQPVTTMIELEAGTQL 618 Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---- 658 + F + +LL+ S F ++++ + GK F+ + E + V G Sbjct: 619 LYYFAGSESTQLLLSGSGAYGFTANVGDMVSRQKAGKAFVTLGEGETLCAPSVVHGVPMN 678 Query: 659 -------------------DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKD 694 HV ++L F I ++ M + G+G+ L S +D Sbjct: 679 ARAEYVEGGEQGAGLLNPASHVICASVGGRILTFEIAELKAMPKGGRGLMLISLED 734 >gi|118602336|ref|YP_903551.1| DNA topoisomerase IV subunit A [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] gi|118567275|gb|ABL02080.1| DNA topoisomerase IV subunit A [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] Length = 745 Score = 483 bits (1242), Expect = e-134, Method: Compositional matrix adjust. Identities = 276/730 (37%), Positives = 439/730 (60%), Gaps = 22/730 (3%) Query: 27 EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86 E YL Y++ I +RA+P + DG KPV RRI++AMSE+GL A FKKSAR VG+V+GK Sbjct: 16 ERAYLDYSMYVILDRALPFIGDGLKPVQRRIVYAMSELGLKSTARFKKSARTVGDVLGKF 75 Query: 87 HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQVAELILQ 145 HPHGD + Y+++V +AQPF RYP I GQGN+G D S AA RYTE+++++ ++L+L Sbjct: 76 HPHGDSACYEAMVLMAQPFSYRYPFIDGQGNWGAPDDPKSFAAMRYTESKLSRYSDLLLS 135 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 +++ V++ D ++ EP P++ PNLL NGTSGIAVGM T++P HN+ E+ A +A Sbjct: 136 EINQGTVNWVDNFDGSLQEPKNLPAQVPNLLLNGTSGIAVGMTTNVPPHNLTEVVSACIA 195 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265 L+D P + ++ +++ I PD+PT IV S + + Y G G ++RA + E +G+ Sbjct: 196 LLDKPSMDLDGIMQIIRAPDYPTDADIVSSPADLRQIYETGHGSVKMRAIYQKE---KGN 252 Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFPKNRSLDPD 323 IV+ +P+Q +++I +IA I AK++PL++DIRDES + RIV+ P++ +D D Sbjct: 253 --IVIEALPFQTSGAKVIIQIAAQIRAKKLPLVDDIRDESDHENPTRIVIIPRSNRVDVD 310 Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383 +LM +F +++E + +NMNV+ + P V+ L +LKEWL++R +V+ R ++R+ I Sbjct: 311 VLMLHLFATTELEKSYRVNMNVIGLNGKPGVLSLIPMLKEWLSYRMKVVINRLTYRLDKI 370 Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLE 443 R+ ILKGLLIA+LNIDE+IAIIR DKPK V++ F L++ QV+AIL L+LR L KLE Sbjct: 371 LVRLHILKGLLIAFLNIDEVIAIIREHDKPKLVLIDHFKLSDIQVEAILELKLRYLAKLE 430 Query: 444 EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVS 503 E +I++E +L EKEK+ LL+S + I E++ + + F RR+ Sbjct: 431 EIKIQAEQQDLALEKEKLKLLLSSDLRLKILIKKELKAIIKDFGD-----ERRSNIKRNV 485 Query: 504 RADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRI 563 +A + + E ITVV+S +GW+RS K +S+D + L++K GDS ++ + + Sbjct: 486 NTAQAFSEDDLAPAENITVVLSEKGWVRSAKGYSIDPNTLNYKAGDSYLTSVKGKSNKPV 545 Query: 564 LLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNA 623 + + + G++Y+L A +L S RG GE + + V + ++ +L+ S+ G Sbjct: 546 IFIDSTGRSYSLLANSLSSARGQGEPLTGKLSPPSEARFVDVIMGKASQNILLASNIGYG 605 Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV---TGDHVAVVGENRKLLIFSIDQIPE 680 FI +++++ + GK F +S +M ++ V +A+V +LLIF I ++P Sbjct: 606 FIATIGDLLSSRQAGKAFFSLSKGAQMMRIINVDDLDNQFIALVTNRGRLLIFPISELPI 665 Query: 681 MSRGKGVRL--QSYKDGGISDVICFKICEGLTW----IDSAGRSYNRSENDLLGWLGKRG 734 +S+GKG +L S KD IC L + + R + DL ++ R Sbjct: 666 LSKGKGSKLIQISTKDVKSRQEFVMNICILLETQHLKVIAGKRHFTIKFQDLSNYISSRA 725 Query: 735 GVGSLVPKGF 744 G L+PKG+ Sbjct: 726 RCGKLLPKGY 735 >gi|221068510|ref|ZP_03544615.1| DNA topoisomerase IV, A subunit [Comamonas testosteroni KF-1] gi|220713533|gb|EED68901.1| DNA topoisomerase IV, A subunit [Comamonas testosteroni KF-1] Length = 796 Score = 482 bits (1241), Expect = e-134, Method: Compositional matrix adjust. Identities = 265/716 (37%), Positives = 400/716 (55%), Gaps = 60/716 (8%) Query: 30 YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF-------GAAFKKSARIVGEV 82 YL YALS +K RA+PD+ DG KPV RRI++AM MGL + A KSAR+VG+V Sbjct: 28 YLEYALSVVKGRALPDVSDGLKPVQRRILYAMERMGLSYSGPNGNTAAKPVKSARVVGDV 87 Query: 83 IGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAEL 142 +G+ HPHGDQS YD+LVR+AQ F QRYPL+ GQGNFG+ DGD AAA RYTEAR++++ L Sbjct: 88 LGRFHPHGDQSAYDALVRMAQDFNQRYPLVDGQGNFGSRDGDGAAAMRYTEARLSKITGL 147 Query: 143 ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEA 202 +L +D VDF Y+ EP P++ P L NG SGIAVG+AT IPSHN+ E+ A Sbjct: 148 LLDEIDMGTVDFVPNYDGSTQEPKQLPARLPFSLLNGASGIAVGLATEIPSHNLPEVAAA 207 Query: 203 ALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVG 262 +ALI P++ E+LL I GPD+P GG I+ S I ++YR GRG +VRARW +EE+ Sbjct: 208 CVALIKKPQLPEEELLALIPGPDYPGGGQIISSSSDIADAYRTGRGSLKVRARWKIEELA 267 Query: 263 RGSWCIVVTEIPYQVQKSRLIEKIAEL------------------IIAKRIPLLEDIRDE 304 RG W +VVTE+P V +++E+I ++ + A + +L+ +RDE Sbjct: 268 RGQWQLVVTELPPGVSAQKVLEEIEDITNPKVKTGKKALSQEQTQLKASMLAVLDCVRDE 327 Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362 S++D VRIV PK + L+ ++ + +E+ +N+ + + P L +L+ Sbjct: 328 SSKDAPVRIVFEPKTGKIPQSELITALLAHTSLESSSSINLTSIGLDGRPVQKSLRQMLE 387 Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422 EW+A R + + RRS R++ + R+ IL+G LNID++IAIIR D+PK ++ F+ Sbjct: 388 EWIAFRFQTVTRRSQHRLEKVLDRIHILEGRQAVLLNIDKVIAIIRASDEPKQALIEAFN 447 Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482 L+E Q + IL +RLR L +LE +I+ EL L +E+ K++ +L S + ++ C Sbjct: 448 LSERQAEDILEIRLRQLARLEAIKIEQELKELRSEQGKLEDILGS-EATMRRLIC----- 501 Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542 KEI + + G R T K + + + EP TV+IS +GW+R+ + H VD + Sbjct: 502 KEIEADAKTFGDARRTLIHEE---KKVVAEVKVVDEPTTVIISEKGWVRTRQGHGVDAAT 558 Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602 L FK GDSL T D++L ++G+ Y++P L GRG G+ + +I+L + Sbjct: 559 LSFKAGDSLYGTFECRTVDQLLAFGSNGRVYSVPVSALPGGRGDGQPVTTMIELEAGTQL 618 Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---- 658 + F +LL+ S F ++++ + GK F+ + E + V G Sbjct: 619 LYYFAGSEGTQLLLSGSGAYGFTANVGDMVSRQKAGKAFVTLGEGETLCAPSVVHGVPMN 678 Query: 659 -------------------DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKD 694 HV ++L F I ++ M + G+G+ L S +D Sbjct: 679 ARAEYVEGGEQGAGLLNPASHVICASVGGRILTFEIAELKAMPKGGRGLMLISLED 734 >gi|34495530|ref|NP_899745.1| DNA topoisomerase IV subunit A [Chromobacterium violaceum ATCC 12472] gi|34101385|gb|AAQ57754.1| DNA topoisomerase IV subunit A [Chromobacterium violaceum ATCC 12472] Length = 783 Score = 482 bits (1241), Expect = e-134, Method: Compositional matrix adjust. Identities = 275/749 (36%), Positives = 425/749 (56%), Gaps = 35/749 (4%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 + L E YL YA+S +K RA+P++ DG KPV RRI++AM +MGL GA KSAR+V Sbjct: 32 IPLDLYAERAYLEYAMSVVKGRALPEVADGQKPVQRRILYAMRDMGLVHGAKPVKSARVV 91 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 GE++GK HPHGD S Y++LVR+AQ F RYPLI GQGNFG+ DGD AAA RYTEAR+T + Sbjct: 92 GEILGKYHPHGDSSAYEALVRMAQDFTLRYPLIDGQGNFGSRDGDGAAAMRYTEARLTPI 151 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 AEL+L +D VDF Y+ EP + P++ P +L NG SGIAVG+AT IP HN+ E+ Sbjct: 152 AELLLSEIDMGTVDFVPNYDGAFEEPSLLPARLPMVLLNGASGIAVGLATEIPPHNLTEV 211 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 A +AL+D+PE+ L++Y+ GPDFP GG I+ I+ +Y G+G RVRA+W VE Sbjct: 212 AAACVALLDDPELDTAALMQYVPGPDFPGGGQIITPVADILSAYETGKGSVRVRAKWEVE 271 Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAEL----IIAKRIPLLED--------------I 301 ++ RG W +VTE+P +++ +I E + A + L +D + Sbjct: 272 KLARGQWRAIVTELPPGSSAQKVLAEIEEATNPKLKAGKKQLSQDQQNLKKLMLDLLDRV 331 Query: 302 RDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359 RDES + VR+V PK+ DPD M + + +E LN+ ++ + P L Sbjct: 332 RDESDSESPVRLVFEPKSSRQDPDEFMNILLAQTSLEGNASLNLVMIGLDGRPGQKGLKP 391 Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS 419 IL EW+ RR + RR + R+ +D+R+ IL+G +IA+++IDE+I +IR D+PKP ++ Sbjct: 392 ILTEWIDFRRTTVTRRLAHRLAQVDKRIHILEGRMIAFIHIDEVIRVIRESDEPKPDLIK 451 Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479 F LTE Q + IL +RLR L +LE ++++ EL L E+E + +L++ + + I Sbjct: 452 AFGLTEIQAEDILEIRLRQLARLEGFKLEKELSELREEREGLRHVLDTP----DALTRLI 507 Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539 R+ EI + + G +R T E+ A++A L Q + EP+T+++S +GWIR+ H+V+ Sbjct: 508 RD--EIQADAAKYGDKRRT--EIKAAERAVLTQTTAD-EPVTLILSQKGWIRARVGHNVE 562 Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHN 599 L L FK+GD L + T ++L +G+AYT+ + +GRG G + L+DL Sbjct: 563 LETLSFKDGDGLAAVVETRTVWNAIVLDHNGRAYTIDPATVPTGRGDGVPVASLVDLQDG 622 Query: 600 QDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD 659 + +V S G FI + ++ + GK F+ + + E + VK+ Sbjct: 623 AKPAQLISGRDEDRFVVAGSGGYGFIAKIGDMAGRVKAGKAFITLDASETVLEPVKLPAA 682 Query: 660 -----HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDG-GISDVICFKICEGLTWID 713 + ++ +LL F ++ E+++G+G+ L + DG ++ + + L Sbjct: 683 PLEQLQLVAASDSDRLLAFPAAELKELAKGRGLMLMALDDGAALTAIGLVAGGKALLSTT 742 Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPK 742 S + L + GKR G L+PK Sbjct: 743 SVRGKEAEEKLALEEFAGKRAKKGKLMPK 771 >gi|121635258|ref|YP_975503.1| DNA topoisomerase IV subunit A [Neisseria meningitidis FAM18] gi|120866964|emb|CAM10726.1| DNA topoisomerase IV subunit A [Neisseria meningitidis FAM18] gi|325138598|gb|EGC61157.1| DNA topoisomerase IV, A subunit [Neisseria meningitidis ES14902] gi|325142792|gb|EGC65164.1| DNA topoisomerase IV, A subunit [Neisseria meningitidis 961-5945] gi|325198714|gb|ADY94170.1| DNA topoisomerase IV, A subunit [Neisseria meningitidis G2136] Length = 765 Score = 482 bits (1240), Expect = e-133, Method: Compositional matrix adjust. Identities = 280/749 (37%), Positives = 419/749 (55%), Gaps = 42/749 (5%) Query: 23 RFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEV 82 R+A E YL YA+S +K RA+P++ DG KPV RRI+ AM +MGL GA KSAR+VGE+ Sbjct: 17 RYA-ERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGEI 75 Query: 83 IGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAEL 142 +GK HPHGD S Y+++VR+AQ F RYPLI G GNFG+ DGD AAA RYTEAR+T +AEL Sbjct: 76 LGKYHPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAEL 135 Query: 143 ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEA 202 +L +++ VDF Y+ EP+ P++ P +L NG SGIAVGMAT IPSHN+ E+ +A Sbjct: 136 LLSEINQGTVDFVPNYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIPSHNLNEVTQA 195 Query: 203 ALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVG 262 A+AL+ P + L++YI PDF GG I+ + + Y G+G RVRAR+ +E++ Sbjct: 196 AIALLKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETGKGSVRVRARYEIEKLA 255 Query: 263 RGSWCIVVTEIPYQVQKSRLIEKIAELIIAK------------------RIPLLEDIRDE 304 RG W ++VTE+P S+++ +I E K + L++ +RDE Sbjct: 256 RGQWRVIVTELPPNANSSKILAEIEEQTNPKPKAGKKQLNQDQLNTKKLMLDLIDRVRDE 315 Query: 305 S--AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362 S VR+V PK+ +D D + ++ + +E +N+ ++ + P L IL+ Sbjct: 316 SDGEHPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMMGLDNRPAQKNLKTILQ 375 Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422 EWL R + RR FR+ +++R+ IL+G L +L+IDE+I +IR D PK +++ F Sbjct: 376 EWLDFRTVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKVIRESDDPKADLMAAFG 435 Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482 LTE Q + IL +RLR L +LE ++++ EL+ L E+ +++ LL+ ++ I + Sbjct: 436 LTEIQAEDILEIRLRQLARLEGFKLEKELNELREEQGRLNILLSDENEKRKLI------I 489 Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542 KEI + G R T E A +A L Q + EPIT+++S +GWIRS H++DLS Sbjct: 490 KEIQADMKQYGDARRTLVE--EAGRAVLTQTTAD-EPITLILSEKGWIRSRAGHNLDLSQ 546 Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602 FKEGD LK L T +++L + G+ YTL A + GRG G + LI+L + Sbjct: 547 TTFKEGDRLKQTLEGRTVLPVVILDSSGRTYTLDAAEIPGGRGDGVPVSSLIELQNGAKP 606 Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-- 660 V L+ SS G FI + +++ + GK + S E + V V Sbjct: 607 VAMLTGLPEQHYLLSSSGGYGFIAKLGDMVGRVKAGKVVMTADSGETVLPPVAVYASSFI 666 Query: 661 ------VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDS 714 +A +NR L F I ++ M++GKG+++ + G S E I+S Sbjct: 667 NPDCKIIAATNQNRA-LAFPIGELKIMAKGKGLQIIGL-NAGESMTHTAVSSEPEILIES 724 Query: 715 AGRSYNRSENDLLGWL--GKRGGVGSLVP 741 GR ++ + L KRG G L+P Sbjct: 725 EGRRGAAHKDRIPISLLEAKRGKKGKLLP 753 >gi|255066925|ref|ZP_05318780.1| DNA topoisomerase IV, A subunit [Neisseria sicca ATCC 29256] gi|255048750|gb|EET44214.1| DNA topoisomerase IV, A subunit [Neisseria sicca ATCC 29256] Length = 769 Score = 482 bits (1240), Expect = e-133, Method: Compositional matrix adjust. Identities = 273/743 (36%), Positives = 417/743 (56%), Gaps = 44/743 (5%) Query: 27 EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86 E YL YA+S +K RA+P++ DG KPV RRI+ AM +MGL GA KSAR+VGE++GK Sbjct: 23 ERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGEILGKY 82 Query: 87 HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQG 146 HPHGD S Y+++VR+AQ F RYPLI G GNFG+ DGD AAA RYTEAR+T +AEL+L Sbjct: 83 HPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAELLLSE 142 Query: 147 VDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALAL 206 +++ VDF Y+ EP+ P++ P +L NG SGIAVGMAT IPSHN+ E+ +AA+AL Sbjct: 143 INQGTVDFVPNYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIPSHNLNEVTQAAIAL 202 Query: 207 IDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSW 266 + P + L++YI PDF GG I+ + + Y G+G RVRAR+ +E++ RG W Sbjct: 203 LKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETGKGSVRVRARYEIEKLARGQW 262 Query: 267 CIVVTEIPYQVQKSRLIEKIAELIIAK------------------RIPLLEDIRDES--A 306 ++VTE+P ++++ +I E K + L++ +RDES Sbjct: 263 RVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDQLNTKKLMLDLIDRVRDESDGE 322 Query: 307 EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366 VR+V PK+ +D D + ++ + +E +N+ ++ + P L IL+EWL Sbjct: 323 HPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMMGLDNRPAQKNLKTILQEWLD 382 Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426 R + RR FR+ +++R+ IL+G L +L+IDE+I +IR D PK +++ F LTE Sbjct: 383 FRVVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKVIRESDDPKTDLMAAFGLTEI 442 Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486 Q + IL +RLR L +LE ++++ EL+ L E+ +++ LL ++ I +KE+ Sbjct: 443 QAEDILEIRLRQLARLEGFKLEKELNELREEQGRLNILLGDENEKRKLI------IKEMQ 496 Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546 + G R T E A +A L Q + EPIT+++S +GWIRS H++DLS FK Sbjct: 497 ADMKQFGDARRTLVE--EAGRAVLTQTTAD-EPITLILSEKGWIRSRAGHNLDLSQTAFK 553 Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606 EGD LK L T +++L + G+ YTL A + GRG G + LI+L + V Sbjct: 554 EGDRLKQTLEGRTVLPVVILDSLGRTYTLDAAEIPGGRGDGVPVSSLIELQNGAKPVAML 613 Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD------- 659 L+ S G FI + +++ + GK + V S E + + V Sbjct: 614 TGQPEQHYLLSGSGGYGFITKLGDMVGRVKAGKVVMTVDSGETVLPPIAVYASSLINPDC 673 Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGG-ISDVICFKICEGLTWIDSAG-R 717 + + + +LL FSI ++ M +G+G++L S +G + V+ E + +++ G R Sbjct: 674 KIVLASSDHRLLAFSIGELKVMPKGRGLQLMSLTEGASLEHVLVTTAAEFI--VETVGKR 731 Query: 718 SYNRSEN----DLLGWLGKRGGV 736 E D+ G GK+G V Sbjct: 732 GAAHQEKLRICDIEGKRGKKGKV 754 >gi|217972003|ref|YP_002356754.1| DNA topoisomerase IV subunit A [Shewanella baltica OS223] gi|217497138|gb|ACK45331.1| DNA topoisomerase IV, A subunit [Shewanella baltica OS223] Length = 758 Score = 482 bits (1240), Expect = e-133, Method: Compositional matrix adjust. Identities = 260/753 (34%), Positives = 441/753 (58%), Gaps = 23/753 (3%) Query: 6 ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65 +S++ L + V+ + LR EE YL Y++ I +RA+P + DG KPV RRII+AMSE+G Sbjct: 1 MSDAIKLSLDGVEQMPLRRFTEEAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELG 60 Query: 66 LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124 L + KKSAR VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D Sbjct: 61 LSAQSKHKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPK 120 Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184 S AA RYTEAR+++ +E++L + + V++ ++ EP V P++ P++L NG +GIA Sbjct: 121 SFAAMRYTEARLSKFSEVLLSELGQGTVEWGANFDGTLKEPKVLPARLPHILLNGITGIA 180 Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244 VGMAT IP HNV+E+ A +AL+D+P++ +E+L+ ++ GPD+PT I+ I + Y Sbjct: 181 VGMATDIPPHNVRELVSACVALLDDPKLDLEQLMAFVPGPDYPTEAEIITPSADIAKIYE 240 Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304 GRG R RA + V+ I++T +P+Q +++E+IA + AK++P++ D+RDE Sbjct: 241 SGRGSLRARAVYTVD-----GGEIIITALPHQASSGKILEQIAGQMQAKKLPMVADLRDE 295 Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362 S + VR+V+ P++ +D D LM +F +D+E F +N+NVL + P+V L +L Sbjct: 296 SDHENPVRLVVVPRSNRVDCDQLMAHLFATTDLEKSFRVNLNVLGLDGRPRVKGLKTLLT 355 Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422 EWL R + + RR +R+ + R+ IL+ L+IA+LNIDE+I IIR D+PK +++RFS Sbjct: 356 EWLEFRVDTVKRRLEYRLDKVVSRLHILEALMIAFLNIDEVIEIIRFHDEPKAELMARFS 415 Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482 L++ Q ++IL L+LR L KLEE++I +E + L AE+EK++ LL S ++ I Sbjct: 416 LSDKQAESILELKLRHLAKLEEFKITAEQNELEAEREKLEQLLGSERRLKTLIK------ 469 Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542 KE+ + G R + + +A +Q + E +TVV+S +GW+R K H +D + Sbjct: 470 KELIQDAETYGDDRRSPIVLRNESRALTEQELTPTEAVTVVLSEKGWVRCAKGHDIDPLS 529 Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602 L +K GD + + + + + G+A+ + L S R GE I ++ + + Sbjct: 530 LSYKSGDQYLCSAIGRSNQAAVFIDSSGRAFATDSHTLPSARSQGEPITTRFNMAPGETM 589 Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGD 659 + + L+ + G FI +++++ + GK L + + K KL+ + Sbjct: 590 QHVLMGEEDQCYLLATDAGYGFICSYNDMVSRNKAGKALLSLPTNAKSLTPKLIDRTKEM 649 Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKG---VRLQSYKDGGISDVIC-FKICEGLTWID-- 713 + + ++L+FS++ +P++S+GKG + + + + +++ ++ T + Sbjct: 650 SLLAITNEGRMLLFSLEALPQLSKGKGNKIIGIPTERAKNREELMTHLQLVPSDTPVTLW 709 Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746 + R +DL + G+RG G+ +P+G R Sbjct: 710 AGKRKLTLKPSDLEHYRGERGRRGAKLPRGLQR 742 >gi|261365318|ref|ZP_05978201.1| DNA topoisomerase IV, A subunit [Neisseria mucosa ATCC 25996] gi|288566249|gb|EFC87809.1| DNA topoisomerase IV, A subunit [Neisseria mucosa ATCC 25996] Length = 769 Score = 482 bits (1240), Expect = e-133, Method: Compositional matrix adjust. Identities = 273/743 (36%), Positives = 417/743 (56%), Gaps = 44/743 (5%) Query: 27 EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86 E YL YA+S +K RA+P++ DG KPV RRI+ AM +MGL GA KSAR+VGE++GK Sbjct: 23 ERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGLAAGAKPVKSARVVGEILGKY 82 Query: 87 HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQG 146 HPHGD S Y+++VR+AQ F RYPLI G GNFG+ DGD AAA RYTEAR+T +AEL+L Sbjct: 83 HPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAELLLSE 142 Query: 147 VDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALAL 206 +++ VDF Y+ EP+ P++ P +L NG SGIAVGMAT IPSHN+ E+ +AA+AL Sbjct: 143 INQGTVDFVPNYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIPSHNLNEVTQAAIAL 202 Query: 207 IDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSW 266 + P + L++YI PDF GG I+ + + Y G+G RVRAR+ +E++ RG W Sbjct: 203 LKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETGKGSVRVRARYEIEKLARGQW 262 Query: 267 CIVVTEIPYQVQKSRLIEKIAELIIAK------------------RIPLLEDIRDES--A 306 ++VTE+P ++++ +I E K + L++ +RDES Sbjct: 263 RVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDQLNTKKLMLDLIDRVRDESDGE 322 Query: 307 EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366 VR+V PK+ +D D + ++ + +E +N+ ++ + P L IL+EWL Sbjct: 323 HPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMMGLDNRPAQKNLKTILQEWLD 382 Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426 R + RR FR+ +++R+ IL+G L +L+IDE+I +IR D PK +++ F LTE Sbjct: 383 FRVVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKVIRESDDPKADLMAAFGLTEI 442 Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486 Q + IL +RLR L +LE ++++ EL+ L E+ +++ LL ++ I +KE+ Sbjct: 443 QAEDILEIRLRQLARLEGFKLEKELNELREEQGRLNILLGDENEKRKLI------IKEMQ 496 Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546 + G R T E A +A L Q + EPIT+++S +GWIRS H++DLS FK Sbjct: 497 ADMKQFGDARRTLVE--EAGRAVLTQTTAD-EPITLILSEKGWIRSRAGHNLDLSQTAFK 553 Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606 EGD LK L T +++L + G+ YTL A + GRG G + LI+L + V Sbjct: 554 EGDRLKQTLEGRTVLPVVILDSLGRTYTLDAAEIPGGRGDGVPVSSLIELQNGAKPVAML 613 Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD------- 659 L+ S G FI + +++ + GK + V S E + + V Sbjct: 614 TGQPEQHYLLSGSGGYGFIAKLGDMVGRVKAGKVVMTVDSGETVLPPIAVYASSLINPDC 673 Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGG-ISDVICFKICEGLTWIDSAG-R 717 + + + +LL FSI ++ M +G+G++L S +G + V+ E + +++ G R Sbjct: 674 KIVLASSDHRLLAFSIGELKVMPKGRGLQLMSLTEGASLEHVLVTTAAEFI--VETVGKR 731 Query: 718 SYNRSEN----DLLGWLGKRGGV 736 E D+ G GK+G V Sbjct: 732 GAAHQEKLRICDIEGKRGKKGKV 754 >gi|264677302|ref|YP_003277208.1| DNA topoisomerase IV, subunit alpha [Comamonas testosteroni CNB-2] gi|262207814|gb|ACY31912.1| DNA topoisomerase IV, A subunit [Comamonas testosteroni CNB-2] Length = 803 Score = 481 bits (1239), Expect = e-133, Method: Compositional matrix adjust. Identities = 265/716 (37%), Positives = 400/716 (55%), Gaps = 60/716 (8%) Query: 30 YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF-------GAAFKKSARIVGEV 82 YL YALS +K RA+PD+ DG KPV RRI++AM MGL + A KSAR+VG+V Sbjct: 35 YLEYALSVVKGRALPDVSDGLKPVQRRILYAMDRMGLGYSGPNGNTAAKPVKSARVVGDV 94 Query: 83 IGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAEL 142 +G+ HPHGDQS YD+LVR+AQ F QRYPL+ GQGNFG+ DGD AAA RYTEAR++++ L Sbjct: 95 LGRFHPHGDQSAYDALVRMAQDFNQRYPLVDGQGNFGSRDGDGAAAMRYTEARLSKITGL 154 Query: 143 ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEA 202 +L +D VDF Y+ EP P++ P L NG SGIAVG+AT IPSHN+ E+ A Sbjct: 155 LLDEIDMGTVDFVPNYDGSTQEPKQLPARLPFSLLNGASGIAVGLATEIPSHNLPEVAAA 214 Query: 203 ALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVG 262 +ALI P++ E+LL I GPD+P GG I+ S I ++YR GRG +VRARW +EE+ Sbjct: 215 CVALIKKPQLPEEELLALIPGPDYPGGGQIISSSSDIADAYRTGRGSLKVRARWKIEELA 274 Query: 263 RGSWCIVVTEIPYQVQKSRLIEKIAEL------------------IIAKRIPLLEDIRDE 304 RG W +VVTE+P V +++E+I ++ + A + +L+ +RDE Sbjct: 275 RGQWQLVVTELPPGVSAQKVLEEIEDITNPKVKTGKKALSQEQTQLKASMLAVLDCVRDE 334 Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362 S++D VRIV PK + L+ ++ + +E+ +N+ + + P L +L+ Sbjct: 335 SSKDAPVRIVFEPKTGKIPQSELITALLAHTSLESSSSINLTSIGLDGRPVQKSLRQMLE 394 Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422 EW+A R + + RRS R++ + R+ IL+G LNID++IAIIR D+PK ++ F+ Sbjct: 395 EWIAFRFQTVTRRSQHRLEKVLDRIHILEGRQAVLLNIDKVIAIIRASDEPKQALIDAFN 454 Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482 L+E Q + IL +RLR L +LE +I+ EL L +E+ K++ +L S + ++ C Sbjct: 455 LSERQAEDILEIRLRQLARLEAIKIEQELKELRSEQGKLEDILGS-EATMRRLIC----- 508 Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542 KEI + + G R T K + + + EP TV+IS +GW+R+ + H VD + Sbjct: 509 KEIEADAKTFGDARRTLIHEE---KKVVAEVKVVDEPTTVIISEKGWVRTRQGHGVDAAT 565 Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602 L FK GDSL T D++L ++G+ Y++P L GRG G+ + +I+L + Sbjct: 566 LSFKAGDSLYGTFECRTVDQLLAFGSNGRVYSVPVSALPGGRGDGQPVTTMIELEAGTQL 625 Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---- 658 + F +LL+ S F ++++ + GK F+ + E + V G Sbjct: 626 LYYFAGSEGTQLLLSGSGAYGFTANVGDMVSRQKAGKAFVTLGEGETLCAPSVVHGVPMN 685 Query: 659 -------------------DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKD 694 HV ++L F I ++ M + G+G+ L S +D Sbjct: 686 ARAEHVEGGEQGAGLLNPASHVICASVGGRILTFEIAELKAMPKGGRGLMLISLED 741 >gi|325132712|gb|EGC55395.1| DNA topoisomerase IV, A subunit [Neisseria meningitidis M6190] Length = 780 Score = 481 bits (1239), Expect = e-133, Method: Compositional matrix adjust. Identities = 280/749 (37%), Positives = 419/749 (55%), Gaps = 42/749 (5%) Query: 23 RFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEV 82 R+A E YL YA+S +K RA+P++ DG KPV RRI+ AM +MGL GA KSAR+VGE+ Sbjct: 32 RYA-ERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGEI 90 Query: 83 IGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAEL 142 +GK HPHGD S Y+++VR+AQ F RYPLI G GNFG+ DGD AAA RYTEAR+T +AEL Sbjct: 91 LGKYHPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAEL 150 Query: 143 ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEA 202 +L +++ VDF Y+ EP+ P++ P +L NG SGIAVGMAT IPSHN+ E+ +A Sbjct: 151 LLSEINQGTVDFVPNYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIPSHNLNEVTQA 210 Query: 203 ALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVG 262 A+AL+ P + L++YI PDF GG I+ + + Y G+G RVRAR+ +E++ Sbjct: 211 AIALLKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETGKGSVRVRARYEIEKLA 270 Query: 263 RGSWCIVVTEIPYQVQKSRLIEKIAELIIAK------------------RIPLLEDIRDE 304 RG W ++VTE+P S+++ +I E K + L++ +RDE Sbjct: 271 RGQWRVIVTELPPNANSSKILAEIEEQTNPKPKAGKKQLNQDQLNTKKLMLDLIDRVRDE 330 Query: 305 S--AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362 S VR+V PK+ +D D + ++ + +E +N+ ++ + P L IL+ Sbjct: 331 SDGEHPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMMGLDNRPAQKNLKTILQ 390 Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422 EWL R + RR FR+ +++R+ IL+G L +L+IDE+I +IR D PK +++ F Sbjct: 391 EWLDFRTVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKVIRESDDPKADLMAAFG 450 Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482 LTE Q + IL +RLR L +LE ++++ EL+ L E+ +++ LL+ ++ I + Sbjct: 451 LTEIQAEDILEIRLRQLARLEGFKLEKELNELREEQGRLNILLSDENEKRKLI------I 504 Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542 KEI + G R T E A +A L Q + EPIT+++S +GWIRS H++DLS Sbjct: 505 KEIQADMKQYGDARRTLVE--EAGRAVLTQTTAD-EPITLILSEKGWIRSRAGHNLDLSQ 561 Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602 FKEGD LK L T +++L + G+ YTL A + GRG G + LI+L + Sbjct: 562 TTFKEGDRLKQTLEGRTVLPVVILDSSGRTYTLDAAEIPGGRGDGVPVSSLIELQNGAKP 621 Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-- 660 V L+ SS G FI + +++ + GK + S E + V V Sbjct: 622 VAMLTGLPEQHYLLSSSGGYGFIAKLGDMVGRVKAGKVVMTADSGETVLPPVAVYASSFI 681 Query: 661 ------VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDS 714 +A +NR L F I ++ M++GKG+++ + G S E I+S Sbjct: 682 NPDCKIIAATNQNRA-LAFPIGELKIMAKGKGLQIIGL-NAGESMTHTAVSSEPEILIES 739 Query: 715 AGRSYNRSENDLLGWL--GKRGGVGSLVP 741 GR ++ + L KRG G L+P Sbjct: 740 EGRRGAAHKDRIPISLLEAKRGKKGKLLP 768 >gi|294668149|ref|ZP_06733256.1| DNA topoisomerase IV, A subunit [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291309857|gb|EFE51100.1| DNA topoisomerase IV, A subunit [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 768 Score = 481 bits (1239), Expect = e-133, Method: Compositional matrix adjust. Identities = 263/696 (37%), Positives = 398/696 (57%), Gaps = 36/696 (5%) Query: 27 EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86 E YL YA+S +K RA+P++ DG KPV RRI+ AM +MGL GA KSAR+VGE++GK Sbjct: 23 ERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGEILGKY 82 Query: 87 HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQG 146 HPHGD S Y+++VR+AQ F RYPLI G GNFG+ DGD AAA RYTEAR+T +AEL+L Sbjct: 83 HPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAELLLSE 142 Query: 147 VDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALAL 206 +++ VDF Y+ EP+ P++ P +L NG SGIAVGMAT IPSHN+ E+ +AA+AL Sbjct: 143 INQGTVDFVPNYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIPSHNLNEVTQAAIAL 202 Query: 207 IDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSW 266 + P + L++YI PDF GG I+ + + Y G+G RVRAR+ +E++ RG W Sbjct: 203 LKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETGKGSVRVRARYEIEKLARGQW 262 Query: 267 CIVVTEIPYQVQKSRLIEKIAELIIAK------------------RIPLLEDIRDES--A 306 ++VTE+P ++++ +I E K + L++ +RDES Sbjct: 263 RVIVTELPPNTNSAKILAEIEEQTNPKPKAGKKQLNQDQLNTKKLMLDLIDRVRDESDGE 322 Query: 307 EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366 VR+V PK+ +D D + ++ + +E +N+ ++ + P L IL+EWL Sbjct: 323 HPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMMGLDNRPAQKNLKTILQEWLD 382 Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426 R + RR F + +++R+ IL+G L +L+IDE+I +IR D PK +++ F LTE Sbjct: 383 FRVVTVTRRLKFCLNQVEKRLHILEGRLKVFLHIDEVIKVIRESDDPKADLMAAFGLTEI 442 Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486 Q + IL +RLR L +LE ++++ EL+ L E+ +++ LL ++ I +KE+ Sbjct: 443 QAEDILEIRLRQLARLEGFKLEKELNELREEQGRLNILLGDENEKRKLI------IKEMQ 496 Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546 + G R T E A +A L Q + EPIT+++S +GWIRS H++DLS FK Sbjct: 497 ADMKQFGDARRTLVE--EAGRAVLTQTTAD-EPITLILSEKGWIRSRAGHNLDLSQTAFK 553 Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606 EGD LK L T +++L + G+ YTL A + GRG G + LI+L + V Sbjct: 554 EGDRLKQTLEGRTVLPVVILDSLGRTYTLDAAEIPGGRGDGVPVSSLIELQNGAKPVAML 613 Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD------- 659 L+ S G FI + ++++ + GK + V S E + + V Sbjct: 614 TGQPEQHYLLSGSGGYGFITKLADMVGRVKAGKVVMTVDSGETVLPPIAVYASSLINPDC 673 Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDG 695 V + + +LL FSI ++ M +G+G++L S DG Sbjct: 674 KVVLASSDHRLLAFSIGELKVMPKGRGLQLMSLTDG 709 >gi|126175767|ref|YP_001051916.1| DNA topoisomerase IV subunit A [Shewanella baltica OS155] gi|152999327|ref|YP_001365008.1| DNA topoisomerase IV subunit A [Shewanella baltica OS185] gi|160873942|ref|YP_001553258.1| DNA topoisomerase IV subunit A [Shewanella baltica OS195] gi|304411162|ref|ZP_07392777.1| DNA topoisomerase IV, A subunit [Shewanella baltica OS183] gi|307306457|ref|ZP_07586200.1| DNA topoisomerase IV, A subunit [Shewanella baltica BA175] gi|125998972|gb|ABN63047.1| DNA topoisomerase IV subunit A [Shewanella baltica OS155] gi|151363945|gb|ABS06945.1| DNA topoisomerase IV, A subunit [Shewanella baltica OS185] gi|160859464|gb|ABX47998.1| DNA topoisomerase IV, A subunit [Shewanella baltica OS195] gi|304350355|gb|EFM14758.1| DNA topoisomerase IV, A subunit [Shewanella baltica OS183] gi|306910748|gb|EFN41176.1| DNA topoisomerase IV, A subunit [Shewanella baltica BA175] gi|315266174|gb|ADT93027.1| DNA topoisomerase IV, A subunit [Shewanella baltica OS678] Length = 758 Score = 481 bits (1239), Expect = e-133, Method: Compositional matrix adjust. Identities = 260/753 (34%), Positives = 441/753 (58%), Gaps = 23/753 (3%) Query: 6 ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65 +S++ L + V+ + LR EE YL Y++ I +RA+P + DG KPV RRII+AMSE+G Sbjct: 1 MSDAIKLSLDGVEQMPLRRFTEEAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSELG 60 Query: 66 LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124 L + KKSAR VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D Sbjct: 61 LSAQSKHKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPK 120 Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184 S AA RYTEAR+++ +E++L + + V++ ++ EP V P++ P++L NG +GIA Sbjct: 121 SFAAMRYTEARLSKFSEVLLSELGQGTVEWGANFDGTLKEPKVLPARLPHILLNGITGIA 180 Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244 VGMAT IP HNV+E+ A +AL+D+P++ +E+L+ ++ GPD+PT I+ I + Y Sbjct: 181 VGMATDIPPHNVRELVSACVALLDDPKLELEQLMAFVPGPDYPTEAEIITPSADIAKIYE 240 Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304 GRG R RA + V+ I++T +P+Q +++E+IA + AK++P++ D+RDE Sbjct: 241 SGRGSLRARAVYTVD-----GGEIIITALPHQASSGKILEQIAGQMQAKKLPMVADLRDE 295 Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362 S + VR+V+ P++ +D D LM +F +D+E F +N+NVL + P+V L +L Sbjct: 296 SDHENPVRLVVVPRSNRVDCDQLMAHLFATTDLEKSFRVNLNVLGLDGRPRVKGLKTLLT 355 Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422 EWL R + + RR +R+ + R+ IL+ L+IA+LNIDE+I IIR D+PK +++RFS Sbjct: 356 EWLEFRVDTVKRRLEYRLDKVVSRLHILEALMIAFLNIDEVIEIIRFHDEPKAELMARFS 415 Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482 L++ Q ++IL L+LR L KLEE++I +E + L AE+EK++ LL S ++ I Sbjct: 416 LSDKQAESILELKLRHLAKLEEFKITAEQNELEAEREKLEQLLGSERRLKTLIK------ 469 Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542 KE+ + G R + + +A +Q + E +TVV+S +GW+R K H +D + Sbjct: 470 KELIQDAETYGDDRRSPIVLRNESRALTEQELTPTEAVTVVLSEKGWVRCAKGHDIDPLS 529 Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602 L +K GD + + + + + G+A+ + L S R GE I ++ + + Sbjct: 530 LSYKSGDQYLCSAIGRSNQAAVFIDSSGRAFATDSHTLPSARSQGEPITTRFNMAPGETM 589 Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGD 659 + + L+ + G FI +++++ + GK L + + K KL+ + Sbjct: 590 QHVLMGEEDQCYLLATDAGYGFICSYNDMVSRNKAGKALLSLPTNAKSLTPKLIDRTKEM 649 Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKG---VRLQSYKDGGISDVIC-FKICEGLTWID-- 713 + + ++L+FS++ +P++S+GKG + + + + +++ ++ T + Sbjct: 650 SLLAITNEGRMLLFSLEALPQLSKGKGNKIIGIPTERAKNREELMTHLQLVPSDTPVTLW 709 Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746 + R +DL + G+RG G+ +P+G R Sbjct: 710 AGKRKLTLKPSDLEHYRGERGRRGAKLPRGLQR 742 >gi|221133675|ref|ZP_03559980.1| DNA topoisomerase IV subunit A [Glaciecola sp. HTCC2999] Length = 788 Score = 481 bits (1239), Expect = e-133, Method: Compositional matrix adjust. Identities = 260/755 (34%), Positives = 432/755 (57%), Gaps = 27/755 (3%) Query: 6 ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65 +SN T+ ++ V+ + +R E+ YL Y++ I +RA+P + DG KPV RRII+AMS++G Sbjct: 1 MSNEVTINQDGVEQLPIRRFTEDAYLNYSMYVIMDRALPHIGDGLKPVQRRIIYAMSDLG 60 Query: 66 LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124 L A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D Sbjct: 61 LSANAKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFTYRYPLVDGQGNWGAPDDPK 120 Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184 S AA RYTEAR+++ +E++L + + D+ ++ EP V P++ P++L NG +GIA Sbjct: 121 SFAAMRYTEARLSRFSEVLLAELGQGTADWSPNFDGTLKEPKVLPARLPHILLNGVTGIA 180 Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244 VGMAT IP HNV+E+ A L+DN + +LLE++ GPD+PT I+ + I + Y Sbjct: 181 VGMATDIPPHNVRELANACSLLLDNSRTELGQLLEHVQGPDYPTDAEIITPKADIQKIYE 240 Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304 GRG ++RA + EE G +++T +P+Q +++E+IA + K++P++ D+RDE Sbjct: 241 TGRGSIKMRAVY-TEENGE----VIITALPHQASGGKILEQIAGQMQTKKLPMVSDLRDE 295 Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362 S + R+V+ P++ +D + LM +F +D+E + +N+N++ + PQV L IL Sbjct: 296 SDHENPTRLVVTPRSNRVDIEQLMAHLFATTDLEKNYRVNINMIGLDGRPQVKDLKSILS 355 Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422 EWL RR+ + RR +R+ + R+ IL+GL+IA+LNIDE+I IIR+ D+PK +++RF Sbjct: 356 EWLVFRRDTVTRRLQYRLDKVLARLHILEGLMIAFLNIDEVIEIIRHHDEPKQELMARFG 415 Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482 L++ Q +AIL L+LR L KLEE +IK E D L E++ + L S ++ I Sbjct: 416 LSDTQAEAILELKLRHLAKLEEMKIKGEQDELSKERDALQLTLGSDRRMKTLIK------ 469 Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542 KE+ + + G R + KA ++ ++ EP+TVVIS +GW R K H VD Sbjct: 470 KELMADAEKYGDDRRSPIVQRGESKALSEKELVPSEPVTVVISAKGWARCAKGHDVDAPN 529 Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602 L +K DS + + + + G+ ++ A L S R GE + ++ + Sbjct: 530 LSYKGDDSYLASAKGRSNQPAVFFDSSGRTFSCDAHTLPSARSQGEPLTGRFNMVSGEQF 589 Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGD 659 + + + K L+ S G F+ +++++ + GK +L + S K+ LV + D Sbjct: 590 EHVIMANESQKFLMASDAGYGFVGSFADMLSKNKAGKAYLSLPSAAKVLTPVLVNDIETD 649 Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKG--------VRLQSYKDGGISDVICFKICEGLTW 711 + ++L+F + +P + +GKG + ++ ++ ++ I C+ Sbjct: 650 RCLAISNEGRMLLFPLRDLPSLGKGKGNKIINIPSAKAKTREEFIVALAIVPNGCD--VK 707 Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746 I + R +DL + G+RG G+ +P+G R Sbjct: 708 ILAGKRGMTLKASDLEHYYGERGRRGNKLPRGLQR 742 >gi|146329441|ref|YP_001209587.1| DNA topoisomerase IV subunit A [Dichelobacter nodosus VCS1703A] gi|146232911|gb|ABQ13889.1| DNA topoisomerase IV, A subunit [Dichelobacter nodosus VCS1703A] Length = 739 Score = 481 bits (1237), Expect = e-133, Method: Compositional matrix adjust. Identities = 268/733 (36%), Positives = 415/733 (56%), Gaps = 20/733 (2%) Query: 21 SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVG 80 SL E+ YL YA+ I +RA+P L DG KPV RR+++AMSE+GL G+ +KKSAR VG Sbjct: 8 SLAAFTEKAYLDYAMYVILDRALPALADGLKPVQRRLVYAMSELGLSAGSKYKKSARTVG 67 Query: 81 EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQV 139 +V+GK HPHGD + Y+++V +AQ F RYPLI GQGN+G+ D S AA RYTE+++T Sbjct: 68 DVLGKYHPHGDSACYEAMVLMAQNFSYRYPLIDGQGNWGSADDPKSFAAMRYTESKLTAY 127 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A +L ++ + VD+ ++ EP P++ PN+L NG SGIAVGM+T IP HN+ EI Sbjct: 128 AHSLLAELNPETVDWTANFDGTLQEPKTLPARLPNILLNGGSGIAVGMSTDIPPHNMGEI 187 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 A AL+ NP++S E LL+ + PDFPTGG+++ +RE I YR G G R+RA + +E Sbjct: 188 VAACQALLKNPQLSEEALLQIVPAPDFPTGGVLINTREEIAHCYRTGSGSVRLRASYHIE 247 Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES--AEDVRIVLFPKN 317 + IV+ E+PYQV S++ E+I + I K++ LE +RDES R+VL P++ Sbjct: 248 KDN-----IVIDELPYQVSGSKVQEQITQQIQEKKLLWLEAVRDESDHKNPTRLVLLPRS 302 Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377 +D LM+ +F +D+E + +N++ + PQ+ PL IL+EWL +R + + RR S Sbjct: 303 HRIDKKRLMQHLFATTDLEKTVRIQLNMIGLDGKPQIKPLIVILREWLTYREQTVMRRLS 362 Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLR 437 +R+ A++ R+EIL GL IA+L +D +I IIR D + ++ LT Q +AILN+RLR Sbjct: 363 YRLHALNERLEILAGLRIAFLQLDTVIQIIREHDDAQTALMQALPLTAAQSEAILNIRLR 422 Query: 438 SLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRT 497 L KLEE I E L+ E++ + +L+++ + IA E+ + ++ RRT Sbjct: 423 QLAKLEENAIVQEEKTLIDEQKSLQNLIDNRDARLQFIADELAADAQNYADP-----RRT 477 Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHA 557 TF + A A +A E +T+V+S W+R K+H VD L +K GD + + A Sbjct: 478 TFIKPD-AKTALPARAWQPSEAVTLVLSKMAWVRLAKTHQVDGRTLAYKSGDEFLLQIAA 536 Query: 558 HTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVV 617 + +L DG+ Y L N+ S RG+GE + IV A D ++ Sbjct: 537 KSDQTAILCGNDGRYYALSLANIASARGYGEPLSRYFSFAEKTTIVAAAALDPEQYYVLA 596 Query: 618 SSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENR-KLLIFSID 676 ++ F+V+ S+++A T+KGK L V + L+ + + +N + LIF Sbjct: 597 ANNAYGFVVKGSDLVAKTKKGKAVLNVGKANALALLPLFDEESLLCALDNTGRTLIFPAR 656 Query: 677 QIPEMSRGKGVRLQS-----YKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLG 731 +P+ S+GKG ++ + + G + + + S RS + + + G Sbjct: 657 DLPQQSKGKGNKIMAITQKEWIQGVRLKQLLILPPQASCLLTSGKRSMQLNAQNWAPYCG 716 Query: 732 KRGGVGSLVPKGF 744 RG G +P+ F Sbjct: 717 ARGQKGVYLPQPF 729 >gi|157963370|ref|YP_001503404.1| DNA topoisomerase IV subunit A [Shewanella pealeana ATCC 700345] gi|157848370|gb|ABV88869.1| DNA topoisomerase IV, A subunit [Shewanella pealeana ATCC 700345] Length = 755 Score = 480 bits (1236), Expect = e-133, Method: Compositional matrix adjust. Identities = 273/754 (36%), Positives = 441/754 (58%), Gaps = 25/754 (3%) Query: 6 ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65 +S++ L + V+ + LR EE YL Y++ I +RA+P + DG KPV RRI++AMSE+G Sbjct: 1 MSDAIDLSLDGVEQMPLRRFTEEAYLNYSMYVIMDRALPHIGDGLKPVQRRIVYAMSELG 60 Query: 66 LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124 L + KKSAR VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D Sbjct: 61 LSAQSKHKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPK 120 Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184 S AA RYTEAR+++ +E++L + + VD+ ++ EP+V P++ P++L NG +GIA Sbjct: 121 SFAAMRYTEARLSKFSEVLLSELGQGTVDWGVNFDGTMKEPLVLPARLPHILLNGITGIA 180 Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244 VGMAT +P HNV+E+ A + L+DNP+ + +L+E++ GPD+PT I+ I + Y+ Sbjct: 181 VGMATDVPPHNVKELVGACVELLDNPKADLARLMEFVPGPDYPTEAEIITPAADITKIYQ 240 Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304 GRG + RA + VE + +V+T +P+Q +++E+IA + AK++P++ D+RDE Sbjct: 241 TGRGSIKARAVYTVE-----NGEVVITALPHQASSGKILEQIASQMQAKKLPMVTDLRDE 295 Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362 S + VR+V+ P++ +D + +M +F +D++ + +N+NVL + PQV L +L Sbjct: 296 SDHESPVRMVIVPRSNRVDCEQMMAHLFATTDLQKSYRVNLNVLGLNGRPQVKGLLELLT 355 Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422 EWL R + RR +R+ I R+ IL L+IA+LNIDE+I IIR D PK ++SRF+ Sbjct: 356 EWLTFRMTTVKRRIEYRLDKILSRLHILDALMIAFLNIDEVIEIIRYNDDPKAELISRFN 415 Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482 L++ Q DAIL+L+LR L KLEE++IK+E L AE++K+ LL+S ++ I Sbjct: 416 LSDKQADAILDLKLRHLAKLEEFKIKAEQSELEAERDKLQLLLSSERRMKTLIK------ 469 Query: 483 KEIFSKSTDLG-RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS 541 KE+ S D G RR+ E + + +A +Q ++ E +TVV+S +GW+R K H VD Sbjct: 470 KELIKDSEDYGDERRSPLVERTES-RALTEQELVPVESVTVVLSEKGWVRCAKGHEVDGK 528 Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD 601 +L +K GD + + + + T G+A+ L S R GE I +L Sbjct: 529 SLSYKAGDGFLRSAQGRSNQPSVFIDTSGRAFATETHTLPSARSQGEPITTRFNLASGAT 588 Query: 602 IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTG 658 + + D L+ S G FI ++++ + GK L + + K+ + V K Sbjct: 589 MEHLLLSDEEQCYLLASDAGYGFICANKDMVSRNKAGKALLSLPANAKVLFPQRVDKSKA 648 Query: 659 DHVAVVGENRKLLIFSIDQIPEMSRGKGVRL-----QSYKDGGISDVICFKICEGLTWID 713 + + ++L+FS+D +P++S+GKG ++ + K+ + I E + Sbjct: 649 QSILAITNEGRMLLFSLDALPQLSKGKGNKIIGIPGERAKNREELLLHLNVIPEDTSVTL 708 Query: 714 SAG-RSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746 AG R +DL + G+RG G+ +P+G R Sbjct: 709 WAGKRKLTLKPSDLEHYRGERGRRGAKLPRGLQR 742 >gi|325204576|gb|ADZ00030.1| DNA topoisomerase IV, A subunit [Neisseria meningitidis M01-240355] Length = 765 Score = 480 bits (1235), Expect = e-133, Method: Compositional matrix adjust. Identities = 278/749 (37%), Positives = 419/749 (55%), Gaps = 42/749 (5%) Query: 23 RFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEV 82 R+A E YL YA+S +K RA+P++ DG KPV RRI+ AM +MGL GA KSAR+VGE+ Sbjct: 17 RYA-ERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGEI 75 Query: 83 IGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAEL 142 +GK HPHGD S Y+++VR+AQ F RYPLI G GNFG+ DGD AAA RYTEAR+T +AEL Sbjct: 76 LGKYHPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAEL 135 Query: 143 ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEA 202 +L +++ VDF Y+ EP+ P++ P +L NG SGIAVGMAT IPSHN+ E+ +A Sbjct: 136 LLSEINQGTVDFVPNYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIPSHNLNEVTQA 195 Query: 203 ALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVG 262 A+AL+ P + L++YI PDF GG I+ + + Y G+G RVRAR+ +E++ Sbjct: 196 AIALLKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETGKGSVRVRARYEIEKLA 255 Query: 263 RGSWCIVVTEIPYQVQKSRLIEKIAELIIAK------------------RIPLLEDIRDE 304 RG W ++VTE+P ++++ +I E K + L++ +RDE Sbjct: 256 RGQWRVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDQLNTKKLMLDLIDRVRDE 315 Query: 305 S--AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362 S VR+V PK+ +D D + ++ + +E +N+ ++ + P L IL+ Sbjct: 316 SDGEHPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMMGLDNRPAQKNLKTILQ 375 Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422 EWL R + RR FR+ +++R+ IL+G L +L+IDE+I +IR D PK +++ F Sbjct: 376 EWLDFRTVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKVIRESDDPKADLMAAFG 435 Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482 LTE Q + IL +RLR L +LE ++++ EL+ L E+ +++ LL ++ I V Sbjct: 436 LTEIQAEDILEIRLRQLARLEGFKLEKELNELREEQGRLNILLGDENEKRKLI------V 489 Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542 KE+ + G R T E A +A L Q + EPIT+++S +GWIRS H++DLS Sbjct: 490 KEMQADMKQFGDVRRTLVE--EAGRAVLTQTTAD-EPITLILSEKGWIRSRAGHNLDLSQ 546 Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602 FKEGD LK L T +++L + G+ YTL A + GRG G + LI+L + Sbjct: 547 TAFKEGDRLKQTLEGRTVLPVVILDSSGRTYTLDAAEIPGGRGDGVPVSSLIELQNGAKP 606 Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-- 660 V L+ SS G FI + ++++ + GK + S E + + V Sbjct: 607 VAMLTGLPEQHYLLSSSGGYGFIAKLADMVGRVKAGKVVMTTDSGETVLPPIAVYASSFI 666 Query: 661 ------VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDS 714 +A +NR L F I ++ M++GKG+++ + G S E I+S Sbjct: 667 NPDCKIIAATSQNRA-LAFPIGELKIMAKGKGLQIIGL-NAGESLTHTAVSSEPEILIES 724 Query: 715 AGRSYNRSENDLLGWL--GKRGGVGSLVP 741 GR ++ + L KRG G L+P Sbjct: 725 EGRRGAAHKDRIPVSLLEAKRGKKGKLLP 753 >gi|218768577|ref|YP_002343089.1| DNA topoisomerase IV subunit A [Neisseria meningitidis Z2491] gi|121052585|emb|CAM08925.1| DNA topoisomerase IV subunit A [Neisseria meningitidis Z2491] gi|319410814|emb|CBY91203.1| topoisomerase IV subunit A [Neisseria meningitidis WUE 2594] Length = 765 Score = 480 bits (1235), Expect = e-133, Method: Compositional matrix adjust. Identities = 279/749 (37%), Positives = 418/749 (55%), Gaps = 42/749 (5%) Query: 23 RFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEV 82 R+A E YL YA+S +K RA+P++ DG KPV RRI+ AM +MGL GA KSAR+VGE+ Sbjct: 17 RYA-ERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGEI 75 Query: 83 IGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAEL 142 +GK HPHGD S Y+++VR+AQ F RYPLI G GNFG+ DGD AAA RYTEAR+T +AEL Sbjct: 76 LGKYHPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAEL 135 Query: 143 ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEA 202 +L +++ VDF Y+ EP+ P++ P +L NG SGIAVGMAT IPSHN+ E+ +A Sbjct: 136 LLSEINQGTVDFVPNYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIPSHNLNEVTQA 195 Query: 203 ALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVG 262 A+AL+ P + L++YI PDF GG I+ + + Y G+G RVRAR+ +E++ Sbjct: 196 AIALLKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETGKGSVRVRARYEIEKLA 255 Query: 263 RGSWCIVVTEIPYQVQKSRLIEKIAELIIAK------------------RIPLLEDIRDE 304 RG W ++VTE+P ++++ +I E K + L++ +RDE Sbjct: 256 RGQWRVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDQLNTKKLMLDLIDRVRDE 315 Query: 305 S--AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362 S VR+V PK+ +D D + ++ + +E +N+ ++ + P L IL+ Sbjct: 316 SDGEHPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMMGLDNRPAQKNLKTILQ 375 Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422 EWL R + RR FR+ +++R+ IL+G L +L+IDE+I +IR D PK +++ F Sbjct: 376 EWLDFRTVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKVIRESDDPKTDLMAAFG 435 Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482 LTE Q + IL +RLR L +LE ++++ EL+ L E+ +++ LL ++ I V Sbjct: 436 LTEIQAEDILEIRLRQLARLEGFKLEKELNELREEQGRLNILLGDENEKRKLI------V 489 Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542 KE+ + G R T E A +A L Q + EPIT+++S +GWIRS H++DLS Sbjct: 490 KEMQADMKQFGDARRTLVE--EAGRAVLTQTTAD-EPITLILSEKGWIRSRAGHNLDLSQ 546 Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602 FKEGD LK L T +++L + G+ YTL A + GRG G + LI+L + Sbjct: 547 TAFKEGDRLKQTLEGRTILPVVILDSSGRTYTLDAAEIPGGRGDGVPVSSLIELQNGAKP 606 Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-- 660 V L+ SS G FI + +++ + GK + S E + V V Sbjct: 607 VAMLTGLPEQHYLLSSSGGYGFIAKLGDMVGRVKAGKVVMTADSGETVLPPVAVYASSFI 666 Query: 661 ------VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDS 714 +A +NR L F I ++ M++GKG+++ + G S E I+S Sbjct: 667 NPDCKIIAATNQNRA-LAFPIGELKIMAKGKGLQIIGL-NAGESMTHTAVSSEPEILIES 724 Query: 715 AGRSYNRSENDLLGWL--GKRGGVGSLVP 741 GR ++ + L KRG G L+P Sbjct: 725 EGRRGAAHKDRIPISLLEAKRGKKGKLLP 753 >gi|254670048|emb|CBA04870.1| topoisomerase IV subunit A [Neisseria meningitidis alpha153] Length = 777 Score = 480 bits (1235), Expect = e-133, Method: Compositional matrix adjust. Identities = 279/749 (37%), Positives = 419/749 (55%), Gaps = 42/749 (5%) Query: 23 RFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEV 82 R+A E YL YA+S +K RA+P++ DG KPV RRI+ AM +MGL GA KSAR+VGE+ Sbjct: 29 RYA-ERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGEI 87 Query: 83 IGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAEL 142 +GK HPHGD S Y+++VR+AQ F RYPLI G GNFG+ DGD AAA RYTEAR+T +AEL Sbjct: 88 LGKYHPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAEL 147 Query: 143 ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEA 202 +L +++ VDF Y+ EP+ P++ P +L NG SGIAVGMAT IPSHN+ E+ +A Sbjct: 148 LLSEINQGTVDFVPNYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIPSHNLNEVTQA 207 Query: 203 ALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVG 262 A+AL+ P + L++YI PDF GG I+ + + Y G+G RVRAR+ +E++ Sbjct: 208 AIALLKKPTLETSDLMQYIPAPDFAGGGQIITPADELRRIYETGKGSVRVRARYEIEKLA 267 Query: 263 RGSWCIVVTEIPYQVQKSRLIEKIAELIIAK------------------RIPLLEDIRDE 304 RG W ++VTE+P ++++ +I E K + L++ +RDE Sbjct: 268 RGQWRVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDQLNTKKLMLDLIDRVRDE 327 Query: 305 S--AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362 S VR+V PK+ +D D + ++ + +E +N+ ++ + P L IL+ Sbjct: 328 SDGEHPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMMGLDNRPAQKNLKTILQ 387 Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422 EWL R + RR FR+ +++R+ IL+G L +L+IDE+I +IR D PK +++ F Sbjct: 388 EWLDFRTVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKVIRESDDPKADLMAAFG 447 Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482 LTE Q + IL +RLR L +LE ++++ EL+ L E+ +++ LL+ ++ I V Sbjct: 448 LTEIQAEDILEIRLRQLARLEGFKLEKELNELREEQGRLNILLSDENEKRKLI------V 501 Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542 KE+ + G R T E A +A L Q + EPIT+++S +GWIRS H++DLS Sbjct: 502 KEMQADMKQYGDARRTLVE--EAGRAVLTQTTAD-EPITLILSEKGWIRSRAGHNLDLSQ 558 Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602 FKEGD LK L T +++L + G+ YTL A + GRG G + LI+L + Sbjct: 559 TAFKEGDCLKQTLEGRTVLPVVILDSSGRTYTLDAAEIPGGRGDGVPVSSLIELQNGAKP 618 Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-- 660 V L+ SS G FI + +++ + GK + S E + V V Sbjct: 619 VAMLTGLPEQHYLLSSSSGYGFITKLGDMVGRVKAGKVVMTADSGETVLPPVAVYASSFI 678 Query: 661 ------VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDS 714 +A +NR L F I ++ M++GKG+++ + G S E I+S Sbjct: 679 NPDCKIIAATSQNRA-LAFPIGELKIMAKGKGLQIIGL-NAGESMTHTAVSSELEILIES 736 Query: 715 AGRSYNRSENDLLGWL--GKRGGVGSLVP 741 GR ++ + L KRG G L+P Sbjct: 737 EGRRGAAHKDRIPISLLEAKRGKKGRLLP 765 >gi|325271257|ref|ZP_08137800.1| DNA topoisomerase IV subunit A [Pseudomonas sp. TJI-51] gi|324103607|gb|EGC00911.1| DNA topoisomerase IV subunit A [Pseudomonas sp. TJI-51] Length = 607 Score = 480 bits (1235), Expect = e-133, Method: Compositional matrix adjust. Identities = 249/588 (42%), Positives = 374/588 (63%), Gaps = 14/588 (2%) Query: 6 ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65 +S+S L + V+ SL E+ YL Y++ I +RA+P + DG KPV RRI++AMSE+G Sbjct: 1 MSDSLELSLDGVERRSLADFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIVYAMSELG 60 Query: 66 LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-D 124 LD A KKSAR VG+V+GK HPHGD + Y+++V +AQPF RY L+ GQGN+G D Sbjct: 61 LDADAKHKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYTLVDGQGNWGAPDDPK 120 Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184 S AA RYTEAR+++ AE++L V + VD+ ++ EP V P++ PN+L NGT+GIA Sbjct: 121 SFAAMRYTEARLSRYAEVLLSEVGQGTVDWVPNFDGTLQEPAVLPARLPNILLNGTTGIA 180 Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244 VGMAT +P HN++E+ A + L+D P+ +IE+L E+I GPD+PT IV R I++ Y Sbjct: 181 VGMATDVPPHNLREVASACVRLLDEPKATIEQLCEHIQGPDYPTEAEIVTPRAEILKMYE 240 Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304 GRG R+RA + VE+ IVVT +P+QV ++++E+IA + AK++P++ D+RDE Sbjct: 241 SGRGSIRMRAVYRVEDGD-----IVVTALPHQVSGAKVLEQIAAQMQAKKLPMVADLRDE 295 Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362 S + RIV+ P++ +D D LM+ +F +D+E+ + +N+N++ + PQ+ L IL Sbjct: 296 SDHENPCRIVIIPRSNRVDADELMQHLFATTDLESSYRVNINIIGLDGRPQLKNLRTILV 355 Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422 EWL R + RR R+ +++R+ +L GLL A+LN+DE+I IIR ED PK +++RF Sbjct: 356 EWLEFRTHTVRRRLQHRLDKVEKRLHLLDGLLTAFLNLDEVIHIIRTEDHPKQALIARFG 415 Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482 LTE Q D IL RLR L +LEE +I+ E D LL E+ K+ +LL S + + E+ + Sbjct: 416 LTEIQADYILETRLRQLARLEEMKIRGEQDELLKEQAKLQALLGSEAKLRKLVRSELIKD 475 Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542 E + RR+ E + A KA + ++ EP+TVV+S +GWIR K H +D + Sbjct: 476 AETYGDD-----RRSPIVERAEA-KALSENELMPTEPVTVVLSEKGWIRCAKGHDIDATG 529 Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAI 590 L +K GD K A + +L+ + G++Y+L A +L S RG GE + Sbjct: 530 LSYKAGDGFKAAAAGRSNQFAVLIDSTGRSYSLAAHSLPSARGQGEPL 577 >gi|224369431|ref|YP_002603595.1| DNA topoisomerase IV subunit A [Desulfobacterium autotrophicum HRM2] gi|223692148|gb|ACN15431.1| ParC [Desulfobacterium autotrophicum HRM2] Length = 753 Score = 480 bits (1235), Expect = e-133, Method: Compositional matrix adjust. Identities = 273/740 (36%), Positives = 441/740 (59%), Gaps = 31/740 (4%) Query: 27 EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86 E YL Y++ I +RA+P + DG KPV RRI++AMS++GL + KKSAR VG+V+GK Sbjct: 22 ETAYLNYSMYVILDRALPYIGDGLKPVQRRIVYAMSQLGLSSSSKHKKSARTVGDVLGKY 81 Query: 87 HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQVAELILQ 145 HPHGD + Y+++V LAQPF RYPL+ GQGN+G D S AA RYTE+R++ A+++L Sbjct: 82 HPHGDSACYEAMVLLAQPFSCRYPLLDGQGNWGAPDDPKSFAAMRYTESRLSTYADILLS 141 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 +D A ++ ++ +EP + P++ PN+L NGT+GIAVGMAT IP HN+ E+ +A + Sbjct: 142 ELDLGATEWTPNFDGTLNEPTLLPARLPNILLNGTTGIAVGMATDIPPHNLTEVAQALVH 201 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265 L+D+P+ ++++L E+I GPD+PT I+ I + Y+ G G ++RA++ V++ Sbjct: 202 LLDHPDATVDQLCEFIQGPDYPTEAEIITPLSEIRQMYKTGNGRIKMRAKFHVDD----- 256 Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES--AEDVRIVLFPKNRSLDPD 323 IVVT +P+ +++E+IA + AK++P++ D+RDES E R+V+ PK R+ + Sbjct: 257 GDIVVTALPHHSSGEKILEQIAAQMQAKKLPMVVDLRDESDHEEPTRLVIIPKART-NTT 315 Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383 LM+ +F +D+E + +NMN++ + P+V PL IL EWLA R + + +R S R+ + Sbjct: 316 ALMDHLFATTDLERSYRINMNMIGINGRPEVKPLQVILSEWLAFRIDTVRKRISHRLDKV 375 Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLE 443 + R+ +L+GLL A+LNIDEIIAIIRN D+PKPV++ RF+L++ Q AIL ++LR+L KLE Sbjct: 376 NDRLHLLEGLLTAFLNIDEIIAIIRNSDEPKPVLMERFNLSDRQATAILEIKLRNLAKLE 435 Query: 444 EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVS 503 E +I++E D+L +E+++++ +L S K+ I RE++ DL RR+ E Sbjct: 436 EIKIQAEKDSLDSERQQLEKILASDKRLRTLIK---REIQADAKTHGDL--RRSPIFERK 490 Query: 504 RADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRI 563 A+ A ++ +I+ EP+TV++S GW R+ K H +D+ L FK GD L + + Sbjct: 491 EAE-AFSEEEVIQIEPMTVILSKNGWARTAKGHDIDIEKLKFKFGDDLLVTAPTMSNRPA 549 Query: 564 LLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNA 623 + + G++Y++ L S R GE + + L I++ + L+ ++ G Sbjct: 550 VFFDSSGRSYSIATHTLASARTMGEPLTGRLTLKPENHIISLVTGEDDDLFLLYTNTGFG 609 Query: 624 FIVEESEIIANTRKGKTFLKVS------SEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQ 677 FI S +IA +R GK L V + E +K D +A V + +L+IF + + Sbjct: 610 FITRFSNLIAKSRTGKAVLTVEEFSEFMAPEPLK---NPETDLLAAVTTSGRLIIFPVRE 666 Query: 678 IPEMSRGKGVRLQSYKDG-----GISDVICFKIC-EGLTWIDSAGRSYNR-SENDLLGWL 730 +P M +GKG ++ G + K+ EG + AG+ + + S + + Sbjct: 667 MPIMEKGKGNKIIGIPKNQLSVPGTERIKTLKLLPEGAAIVIYAGKHFLKLSVGNQDNYR 726 Query: 731 GKRGGVGSLVPKGFPRSGKF 750 KRG G +P+GF F Sbjct: 727 SKRGYRGKKLPRGFQNVSHF 746 >gi|313668023|ref|YP_004048307.1| DNA topoisomerase IV subunit A [Neisseria lactamica ST-640] gi|313005485|emb|CBN86920.1| DNA topoisomerase IV subunit A [Neisseria lactamica 020-06] Length = 765 Score = 479 bits (1234), Expect = e-133, Method: Compositional matrix adjust. Identities = 280/749 (37%), Positives = 418/749 (55%), Gaps = 42/749 (5%) Query: 23 RFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEV 82 R+A E YL YA+S +K RA+P++ DG KPV RRI+ AM +MGL GA KSAR+VGE+ Sbjct: 17 RYA-ERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGEI 75 Query: 83 IGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAEL 142 +GK HPHGD S Y+++VR+AQ F RYPLI G GNFG+ DGD AAA RYTEAR+T +AEL Sbjct: 76 LGKYHPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAEL 135 Query: 143 ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEA 202 +L +++ VDF Y+ EP+ P++ P +L NG SGIAVGMAT IPSHN+ E+ +A Sbjct: 136 LLSEINQGTVDFVPNYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIPSHNLNEVTQA 195 Query: 203 ALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVG 262 A+AL+ P + L++YI PDF GG I+ + + Y G+G RVRAR+ +E++ Sbjct: 196 AIALLKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETGKGSVRVRARYEIEKLA 255 Query: 263 RGSWCIVVTEIPYQVQKSRLIEKIAELIIAK------------------RIPLLEDIRDE 304 RG W ++VTE+P ++++ +I E K + L++ +RDE Sbjct: 256 RGQWRVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDQLNTKKLMLDLIDRVRDE 315 Query: 305 S--AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362 S VR+V PK+ +D D + ++ + +E +N+ ++ + P L IL+ Sbjct: 316 SDGEHPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMMGLDNRPAQKNLKTILQ 375 Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422 EWL R + RR FR+ +++R+ IL+G L +L+IDE+I +IR D PK +++ F Sbjct: 376 EWLDFRTVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKVIRESDDPKADLMAAFG 435 Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482 LTE Q + IL +RLR L +LE ++++ EL+ L E+ +++ LL ++ I V Sbjct: 436 LTEIQAEDILEIRLRQLARLEGFKLEKELNELREEQGRLNILLGDENEKRKLI------V 489 Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542 KE+ + G R T E A +A L Q + EPIT+++S +GWIRS H++DLS Sbjct: 490 KEMQADMKQYGDARRTLVE--EAGRAVLTQTTAD-EPITLILSEKGWIRSRAGHNLDLSQ 546 Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602 FKEGD LK L T +++L + G+ YTL A + GRG G I LI+L + Sbjct: 547 TAFKEGDRLKQTLEGRTVLPVVILDSLGRTYTLDAAEIPGGRGDGVPISSLIELQNGAKP 606 Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-- 660 V L+ SS G FI + +++ + GK + S E + V V Sbjct: 607 VAMLTGLPEQHYLLSSSGGYGFIAKLGDMVGRVKAGKVVMTADSGETVLPPVAVYASSFI 666 Query: 661 ------VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDS 714 +A +NR L F I ++ M++GKG+++ + G S E I+S Sbjct: 667 NPDCKIIAATSQNRA-LAFPIGELKIMAKGKGLQIIGL-NAGESMTHTAVSSEPEILIES 724 Query: 715 AGRSYNRSENDLLGWL--GKRGGVGSLVP 741 GR ++ + L KRG G L+P Sbjct: 725 EGRRGAAHKDRIPVSLLEAKRGKKGKLLP 753 >gi|149926251|ref|ZP_01914513.1| DNA topoisomerase IV subunit A [Limnobacter sp. MED105] gi|149825069|gb|EDM84281.1| DNA topoisomerase IV subunit A [Limnobacter sp. MED105] Length = 773 Score = 479 bits (1234), Expect = e-133, Method: Compositional matrix adjust. Identities = 266/707 (37%), Positives = 411/707 (58%), Gaps = 38/707 (5%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 ++ + ++L E YL YA+S +K RA+P+ DG KPV RRI++AM+EMGL A K Sbjct: 14 DDSETITLGLYAERAYLDYAISVVKGRALPECADGQKPVQRRILYAMNEMGLGNNAKPVK 73 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 SAR+VG+V+GK HPHGDQ+ YD+LVR+AQ F RYPLI GQGNFG+ DGD AAA RYTEA Sbjct: 74 SARVVGDVLGKYHPHGDQAAYDALVRMAQNFTLRYPLIDGQGNFGSRDGDGAAAMRYTEA 133 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 R+T +A+L+L VD VDF Y+ EP + P++ P +L NG SGIAVGMAT IP H Sbjct: 134 RLTPIAKLLLDEVDMGTVDFIPNYDGSFQEPKLLPARLPFVLLNGASGIAVGMATDIPPH 193 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 N++E+ A + LI +P ++ ++ ++ PDFP G I+ ++ E Y GRG +VRA Sbjct: 194 NIREVAAATIHLIKHPNADLDTIMGHLPAPDFPGGAQIISPASAMKEIYAGGRGSIKVRA 253 Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAEL------------------IIAKRIP 296 RW +EE+ RG W +VV E+P ++++E+I EL + A+ + Sbjct: 254 RWDIEEMARGQWQLVVKELPPNTSTAKVLEEIEELTNPKVKTGKKGLSTEQQNLKAQVLA 313 Query: 297 LLEDIRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQV 354 +L+ +RDES ++ VR+V PK+R++ + + + +ET +N+ + P Sbjct: 314 MLDAVRDESGKENAVRLVFEPKSRNVSVEEFSNLLLSHTSLETNTSINLVSIDNAGRPGQ 373 Query: 355 MPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK 414 L +L +W+ R+ + RRS R+ ++ R+ +L+G LIA+LNIDE+I +IR D+PK Sbjct: 374 RGLIAMLLDWIEFRKVCVTRRSQHRLAQVNDRIHVLEGRLIAWLNIDEVIKVIRESDEPK 433 Query: 415 PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQ 474 P ++ F L++ Q + IL +RLR L +LE+ +I+ EL L EK +++LL + + Sbjct: 434 PALIEAFKLSDRQAEDILEIRLRQLARLEKIKIEQELAKLAEEKADLEALLADEGKLKTR 493 Query: 475 IACEIREVKEIFSKSTD-LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL 533 I EIR K TD G R T E A+KA+++ ++E EP TV++S + WIR+ Sbjct: 494 IIGEIR-------KDTDTYGDDRRTLIE--EAEKASVEVKVVE-EPTTVIVSQKFWIRNR 543 Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD---GKAYTLPAGNLLSGRGHGEAI 590 + H D + FK GD+L A TTD L GK +++P GRG G Sbjct: 544 QGHGHDAAQFGFKVGDALYAAFECKTTDNTYLFGAGNALGKVFSVPVAAWPGGRGDGIPA 603 Query: 591 QLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM 650 Q L++LN + A +T + + S F+ + + + GK F+ ++ EK+ Sbjct: 604 QSLVELNGGS-LSHALAAPATQPVFLACSAAYGFLATAGNMESRMKAGKQFISLNPGEKL 662 Query: 651 --KLVVKVTGDHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKD 694 +++ T D VAV+ E+ + +F +D++ ++S G+GV+L D Sbjct: 663 LSPALLQPTDDRVAVLSESGRFHVFMLDELKQLSGGGRGVQLLPLDD 709 >gi|325201724|gb|ADY97178.1| DNA topoisomerase IV, A subunit [Neisseria meningitidis M01-240149] gi|325208532|gb|ADZ03984.1| DNA topoisomerase IV, A subunit [Neisseria meningitidis NZ-05/33] Length = 765 Score = 479 bits (1232), Expect = e-132, Method: Compositional matrix adjust. Identities = 277/749 (36%), Positives = 420/749 (56%), Gaps = 42/749 (5%) Query: 23 RFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEV 82 R+A E YL YA+S +K RA+P++ DG KPV RRI+ AM +MGL GA KSAR+VGE+ Sbjct: 17 RYA-ERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGEI 75 Query: 83 IGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAEL 142 +GK HPHGD S Y+++VR+AQ F RYPLI G GNFG+ DGD AAA RYTEAR+T +AEL Sbjct: 76 LGKYHPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAEL 135 Query: 143 ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEA 202 +L +++ VDF Y+ EP+ P++ P +L NG SGIAVGMAT IPSHN+ E+ +A Sbjct: 136 LLSEINQGTVDFVPNYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIPSHNLNEVTQA 195 Query: 203 ALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVG 262 A+AL+ P + L++YI PDF GG I+ + + Y G+G RVRAR+ +E++ Sbjct: 196 AIALLKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETGKGSVRVRARYEIEKLA 255 Query: 263 RGSWCIVVTEIPYQVQKSRLIEKIAELIIAK------------------RIPLLEDIRDE 304 RG W ++VTE+P ++++ +I E K + L++ +RDE Sbjct: 256 RGQWRVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDQLNTKKLMLDLIDRVRDE 315 Query: 305 S--AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362 S VR+V PK+ +D D + ++ + +E +N+ ++ + P L IL+ Sbjct: 316 SDGEHPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMMGLDNRPAQKNLKTILQ 375 Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422 EWL R + RR FR+ +++R+ IL+G L +L+IDE+I +IR D PK +++ F Sbjct: 376 EWLDFRTVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKVIRESDDPKADLMAAFG 435 Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482 LTE Q + IL +RLR L +LE ++++ EL+ L E+ +++ LL ++ I + Sbjct: 436 LTEIQAEDILEIRLRQLARLEGFKLEKELNELREEQGRLNILLGDENEKRKLI------I 489 Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542 KE+ + G R T E A +A L Q + EPIT+++S +GWIRS H++DLS Sbjct: 490 KEMQADMKQYGDARRTLVE--EAGRAVLTQTTAD-EPITLILSEKGWIRSRAGHNLDLSQ 546 Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602 FKEGD LK L T +++L + G+ YTL A + GRG G + LI+L ++ Sbjct: 547 TAFKEGDRLKQTLEGRTVLPVVILDSLGRTYTLDAAEIPGGRGDGVPVSSLIELQNSAKP 606 Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-- 660 V L+ SS G FI + ++++ + GK + S E + + V Sbjct: 607 VAMLTGLPEQHYLLSSSGGYGFIAKLADMVGRVKAGKVVMTTDSGETVLPPIAVYASSFI 666 Query: 661 ------VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDS 714 +A +NR L F I ++ M++GKG+++ + G S E I+S Sbjct: 667 NPDCKIIAATSQNRA-LAFPIGELKIMAKGKGLQIIGL-NAGESLTHTAVSSEPEILIES 724 Query: 715 AGRSYNRSENDLLGWL--GKRGGVGSLVP 741 GR ++ + L KRG G L+P Sbjct: 725 EGRRGAAHKDRIPVSLLEAKRGKKGKLLP 753 >gi|194097827|ref|YP_002000872.1| DNA topoisomerase IV subunit A [Neisseria gonorrhoeae NCCP11945] gi|193933117|gb|ACF28941.1| DNA topoisomerase IV subunit A [Neisseria gonorrhoeae NCCP11945] Length = 767 Score = 479 bits (1232), Expect = e-132, Method: Compositional matrix adjust. Identities = 277/749 (36%), Positives = 419/749 (55%), Gaps = 42/749 (5%) Query: 23 RFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEV 82 R+A E YL YA+S +K RA+P++ DG KPV RRI+ AM +MGL GA KSAR+VGE+ Sbjct: 19 RYA-ERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGEI 77 Query: 83 IGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAEL 142 +GK HPHGD+S Y+++VR+AQ F RYPLI G GNFG+ DGD AAA RYTEAR+T +AEL Sbjct: 78 LGKYHPHGDRSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAEL 137 Query: 143 ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEA 202 +L +++ VDF Y+ EP+ P++ P +L NG SGIAVGMAT IPSHN+ E+ +A Sbjct: 138 LLSEINQGTVDFMPNYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIPSHNLNEVTQA 197 Query: 203 ALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVG 262 A+AL+ P + L++YI PDF GG I+ + + Y G+G RVRAR+ +E++ Sbjct: 198 AIALLKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETGKGSVRVRARYEIEKLA 257 Query: 263 RGSWCIVVTEIPYQVQKSRLIEKIAELIIAK------------------RIPLLEDIRDE 304 RG W ++VTE+P ++++ +I E K + L++ +RDE Sbjct: 258 RGQWRVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDRLNTKKLMLDLIDRVRDE 317 Query: 305 S--AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362 S VR+V PK+ +D D + ++ + +E +N+ ++ + P L IL+ Sbjct: 318 SDGEHPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMMGLDNRPAQKNLKTILQ 377 Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422 EWL R + RR FR+ +++R+ IL+G L +L+IDE+I +IR D PK +++ F Sbjct: 378 EWLDFRVVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKVIRESDDPKADLMAVFG 437 Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482 LTE Q + IL +RLR L +LE ++++ EL+ L E+ +++ LL ++ I + Sbjct: 438 LTEIQAEDILEIRLRQLARLEGFKLEKELNELREEQGRLNILLGDENEKRKLI------I 491 Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542 KE+ + G R T E A +A L Q + EPIT+++S +GWIRS H++DLS Sbjct: 492 KEMQADMKQFGDARRTLVE--EAGRAVLTQTAAD-EPITLILSEKGWIRSRAGHNLDLSQ 548 Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602 FKEGD LK L T +++L + G+ Y++ A + GRG G + LI+L + Sbjct: 549 TAFKEGDRLKQTLEGRTVLPVVILDSSGRTYSIDAAEIPGGRGDGVPVSSLIELQNGAKP 608 Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-- 660 V L+ SS G FI + +++ + GK + S E + V V Sbjct: 609 VAMLTGLPEQHYLLSSSGGYGFIAKLGDMVGRVKAGKVVMTADSGETVLPPVAVYASSFI 668 Query: 661 ------VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDS 714 +A +NR L F I ++ M++GKG+++ + G S E I+S Sbjct: 669 NPDCKIIAATSQNRA-LAFPIGELKIMAKGKGLQIIGL-NAGESMTHTAVSSEPEILIES 726 Query: 715 AGRSYNRSENDLLGWL--GKRGGVGSLVP 741 GR ++ L L KRG G L+P Sbjct: 727 EGRRGAAHKDRLPVALIEAKRGKKGRLLP 755 >gi|296313795|ref|ZP_06863736.1| DNA topoisomerase IV, A subunit [Neisseria polysaccharea ATCC 43768] gi|296839618|gb|EFH23556.1| DNA topoisomerase IV, A subunit [Neisseria polysaccharea ATCC 43768] Length = 767 Score = 478 bits (1231), Expect = e-132, Method: Compositional matrix adjust. Identities = 278/749 (37%), Positives = 419/749 (55%), Gaps = 42/749 (5%) Query: 23 RFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEV 82 R+A E YL YA+S +K RA+P++ DG KPV RRI+ AM +MGL GA KSAR+VGE+ Sbjct: 19 RYA-ERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGEI 77 Query: 83 IGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAEL 142 +GK HPHGD S Y+++VR+AQ F RYPLI G GNFG+ DGD AAA RYTEAR+T +AEL Sbjct: 78 LGKYHPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAEL 137 Query: 143 ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEA 202 +L +++ VDF Y+ EP+ P++ P +L NG SGIAVGMAT IPSHN+ E+ +A Sbjct: 138 LLSEINQGTVDFVPNYDGAFDEPLHLPARLPIVLLNGASGIAVGMATEIPSHNLNEVTQA 197 Query: 203 ALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVG 262 A+AL+ P + L++YI PDF GG I+ + + Y G+G RVRAR+ +E++ Sbjct: 198 AIALLKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETGKGSVRVRARYEIEKLA 257 Query: 263 RGSWCIVVTEIPYQVQKSRLIEKIAELIIAK------------------RIPLLEDIRDE 304 RG W ++VTE+P ++++ +I E K + L++ +RDE Sbjct: 258 RGQWRVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDQLNTKKLMLDLIDRVRDE 317 Query: 305 S--AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362 S VR+V PK+ +D D + ++ + +E +N+ ++ + P L IL+ Sbjct: 318 SDGEHPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMMGLDNRPAQKNLKTILQ 377 Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422 EWL R + RR FR+ +++R+ IL+G L +L+IDE+I +IR D PK +++ F Sbjct: 378 EWLDFRVVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKVIRESDDPKADLMAAFG 437 Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482 LTE Q + IL +RLR L +LE ++++ EL+ L E+ +++ LL+ ++ I + Sbjct: 438 LTEIQAEDILEIRLRQLARLEGFKLEKELNELREEQGRLNILLSDENEKRKLI------I 491 Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542 KE+ + G R T E A +A L Q + EPIT+++S +GWIRS H++DLS Sbjct: 492 KEMQADMKQFGDARRTLVE--EAGRAVLTQTTAD-EPITLILSEKGWIRSRAGHNLDLSQ 548 Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602 FKEGD LK L T +++L + G+ YTL A + GRG G + LI+L + Sbjct: 549 TAFKEGDCLKQTLEGRTVLPVVILDSSGRTYTLDAAEIPGGRGDGVPVSSLIELQNGAKP 608 Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-- 660 V L+ SS G FI + +++ + GK + S E + V V Sbjct: 609 VAMLTGLPEQHYLLSSSGGYGFIAKLGDMVGRVKAGKVVMTTDSGETVLPPVAVYASSFI 668 Query: 661 ------VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDS 714 +A +NR L F I ++ M++GKG+++ + G S E I+S Sbjct: 669 NPDCKIIAATSQNRA-LAFPIGELKIMAKGKGLQIIGL-NAGESLTHTAVSSEPEILIES 726 Query: 715 AGRSYNRSENDLLGWL--GKRGGVGSLVP 741 GR ++ + L KRG G L+P Sbjct: 727 EGRRGAAHKDRIPVSLLEAKRGKKGRLLP 755 >gi|240116473|ref|ZP_04730535.1| DNA topoisomerase IV subunit A [Neisseria gonorrhoeae PID18] gi|240122331|ref|ZP_04735287.1| DNA topoisomerase IV subunit A [Neisseria gonorrhoeae PID332] gi|260441694|ref|ZP_05795510.1| DNA topoisomerase IV subunit A [Neisseria gonorrhoeae DGI2] gi|268602145|ref|ZP_06136312.1| DNA topoisomerase 4 subunit A [Neisseria gonorrhoeae PID18] gi|268680916|ref|ZP_06147778.1| DNA topoisomerase 4 subunit A [Neisseria gonorrhoeae PID332] gi|291045076|ref|ZP_06570784.1| DNA topoisomerase IV subunit A [Neisseria gonorrhoeae DGI2] gi|268586276|gb|EEZ50952.1| DNA topoisomerase 4 subunit A [Neisseria gonorrhoeae PID18] gi|268621200|gb|EEZ53600.1| DNA topoisomerase 4 subunit A [Neisseria gonorrhoeae PID332] gi|291011079|gb|EFE03076.1| DNA topoisomerase IV subunit A [Neisseria gonorrhoeae DGI2] Length = 767 Score = 478 bits (1230), Expect = e-132, Method: Compositional matrix adjust. Identities = 277/749 (36%), Positives = 417/749 (55%), Gaps = 42/749 (5%) Query: 23 RFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEV 82 R+A E YL YA+S +K RA+P++ DG KPV RRI+ AM +MGL GA KSAR+VGE+ Sbjct: 19 RYA-ERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGEI 77 Query: 83 IGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAEL 142 +GK HPHGD S Y+++VR+AQ F RYPLI G GNFG+ DGD AAA RYTEAR+T +AEL Sbjct: 78 LGKYHPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAEL 137 Query: 143 ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEA 202 +L +++ VDF Y+ EP+ P++ P +L NG SGIAVGMAT IPSHN+ E+ +A Sbjct: 138 LLSEINQGTVDFMPNYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIPSHNLNEVTQA 197 Query: 203 ALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVG 262 A+AL+ P + L++YI PDF GG I+ + + Y G+G RVRAR+ +E++ Sbjct: 198 AIALLKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETGKGSVRVRARYEIEKLA 257 Query: 263 RGSWCIVVTEIPYQVQKSRLIEKIAELIIAK------------------RIPLLEDIRDE 304 RG W ++VTE+P ++++ +I E K + L++ +RDE Sbjct: 258 RGQWRVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDRLNTKKLMLDLIDRVRDE 317 Query: 305 S--AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362 S VR+V PK+ +D D + ++ + +E +N+ ++ + P L IL+ Sbjct: 318 SDGEHPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMMGLDNRPAQKNLKTILQ 377 Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422 EWL R + RR FR+ +++R+ IL+G L +L+IDE+I +IR D PK +++ F Sbjct: 378 EWLDFRVVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKVIRESDDPKADLMAAFG 437 Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482 LTE Q + IL +RLR L +LE ++++ EL+ L E+ +++ L ++ I + Sbjct: 438 LTEIQAEDILEIRLRQLARLEGFKLEKELNELREEQGRLNIFLGDENEKRKLI------I 491 Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542 KE+ + G R T E A +A L Q + EPIT+++S +GWIRS H++DLS Sbjct: 492 KEMQADMKQFGDARRTLVE--EAGRAVLTQTAAD-EPITLILSEKGWIRSRAGHNLDLSQ 548 Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602 FKEGD LK L T +++L + G+ Y++ A + GRG G I LI+L + Sbjct: 549 TAFKEGDRLKQTLEGRTVLPVVILDSSGRTYSIDAAEIPGGRGDGVPISSLIELQNGAKP 608 Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-- 660 V L+ SS G FI + +++ + GK + S E + V V Sbjct: 609 VAMLTGLPEQHYLLSSSGGYGFIAKLGDMVGRVKAGKVVMTADSGETVLPPVAVYASSFI 668 Query: 661 ------VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDS 714 +A +NR L F I ++ M++GKG+++ + G S E I+S Sbjct: 669 NPDCKIIAATSQNRA-LAFPIGELKIMAKGKGLQIIGL-NAGESMTHTAVSSEPEILIES 726 Query: 715 AGRSYNRSENDLLGWL--GKRGGVGSLVP 741 GR ++ L L KRG G L+P Sbjct: 727 EGRRGAAHKDRLPVALIEAKRGKKGRLLP 755 >gi|240117116|ref|ZP_04731178.1| DNA topoisomerase IV subunit A [Neisseria gonorrhoeae PID1] gi|268602801|ref|ZP_06136968.1| DNA topoisomerase IV subunit A [Neisseria gonorrhoeae PID1] gi|268586932|gb|EEZ51608.1| DNA topoisomerase IV subunit A [Neisseria gonorrhoeae PID1] Length = 767 Score = 478 bits (1230), Expect = e-132, Method: Compositional matrix adjust. Identities = 277/749 (36%), Positives = 418/749 (55%), Gaps = 42/749 (5%) Query: 23 RFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEV 82 R+A E YL YA+S +K RA+P++ DG KPV RRI+ AM +MGL GA KSAR+VGE+ Sbjct: 19 RYA-ERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGEI 77 Query: 83 IGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAEL 142 +GK HPHGD S Y+++VR+AQ F RYPLI G GNFG+ DGD AAA RYTEAR+T +AEL Sbjct: 78 LGKYHPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAEL 137 Query: 143 ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEA 202 +L +++ VDF Y+ EP+ P++ P +L NG SGIAVGMAT IPSHN+ E+ +A Sbjct: 138 LLSEINQGTVDFMPNYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIPSHNLNEVTQA 197 Query: 203 ALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVG 262 A+AL+ P + L++YI PDF GG I+ + + Y G+G RVRAR+ +E++ Sbjct: 198 AIALLKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETGKGSVRVRARYEIEKLA 257 Query: 263 RGSWCIVVTEIPYQVQKSRLIEKIAELIIAK------------------RIPLLEDIRDE 304 RG W ++VTE+P ++++ +I E K + L++ +RDE Sbjct: 258 RGQWRVIVTELPPNANSAKILVEIEEQTNPKPKAGKKQLNQDRLNTKKLMLDLIDRVRDE 317 Query: 305 S--AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362 S VR+V PK+ +D D + ++ + +E +N+ ++ + P L IL+ Sbjct: 318 SDGEHPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMMGLDNRPAQKNLKTILQ 377 Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422 EWL R + RR FR+ +++R+ IL+G L +L+IDE+I +IR D PK +++ F Sbjct: 378 EWLDFRIVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKVIRESDDPKADLMAAFG 437 Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482 LTE Q + IL +RLR L +LE ++++ EL+ L E+ +++ LL ++ I + Sbjct: 438 LTEIQAEDILEIRLRQLARLEGFKLEKELNELREEQGRLNILLGDENEKRKLI------I 491 Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542 KE+ + G R T E A +A L Q + EPIT+++S +GWIRS H++DLS Sbjct: 492 KEMQADMKQFGDARRTLVE--EAGRAVLTQTAAD-EPITLILSEKGWIRSRAGHNLDLSQ 548 Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602 FKEGD LK L T +++L + G+ Y++ A + GRG G + LI+L + Sbjct: 549 TAFKEGDRLKQTLEGRTVLPVVILDSSGRTYSIDAAEIPGGRGDGVPVSSLIELQNGAKP 608 Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-- 660 V L+ SS G FI + +++ + GK + S E + V V Sbjct: 609 VAMLTGLPEQHYLLSSSGGYGFIAKLGDMVGRVKAGKVVMTADSGETVLPPVAVYASSFI 668 Query: 661 ------VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDS 714 +A +NR L F I ++ M++GKG+++ + G S E I+S Sbjct: 669 NPDCKIIAATSQNRA-LAFPIGELKIMAKGKGLQIIGL-NAGESMTHTAVSSEPEILIES 726 Query: 715 AGRSYNRSENDLLGWL--GKRGGVGSLVP 741 GR ++ L L KRG G L+P Sbjct: 727 EGRRGAAHKDRLPVALIEAKRGKKGRLLP 755 >gi|225023611|ref|ZP_03712803.1| hypothetical protein EIKCOROL_00471 [Eikenella corrodens ATCC 23834] gi|224943493|gb|EEG24702.1| hypothetical protein EIKCOROL_00471 [Eikenella corrodens ATCC 23834] Length = 770 Score = 478 bits (1230), Expect = e-132, Method: Compositional matrix adjust. Identities = 268/760 (35%), Positives = 422/760 (55%), Gaps = 39/760 (5%) Query: 10 NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69 NT E+ + L E YL YA+S +K RA+PD+ DG KPV RRI+ AM EMGL Sbjct: 4 NTASAEHSDILLLAPYAERAYLEYAMSVVKGRALPDVGDGQKPVQRRILFAMKEMGLAAN 63 Query: 70 AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129 + KSAR+VGE++GK HPHGD S YD++VR+AQ F RYPLI G GNFG+ DGD AAA Sbjct: 64 SKPVKSARVVGEILGKYHPHGDASAYDAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAM 123 Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189 RYTEAR+T +AEL+L + + VDF Y+ EPV P++ P +L NG SGIAVGMAT Sbjct: 124 RYTEARLTPIAELLLSELHQGTVDFVPNYDGAFEEPVALPARLPMVLLNGASGIAVGMAT 183 Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249 IP HN+ E+ AA+AL+ P ++ +L+E+ PDF GG I+ + +++ Y G+G Sbjct: 184 EIPPHNLGEVTAAAVALLKKPTLTTAELMEHTPAPDFAGGGHIITPAKDLLQLYETGKGS 243 Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAK---------------- 293 RVRAR+ +E++ RG W +V+TE+P +++ +I E K Sbjct: 244 IRVRARYEIEKLARGQWRLVITELPPNTSAQKILAEIEEQTNPKPKSGKKQLNQDQLNTK 303 Query: 294 --RIPLLEDIRDES--AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG 349 + L++ +RDES VR+V PK+ ++PD + ++ + +E P N+ ++ + Sbjct: 304 KLMLELIDKVRDESDGEHPVRLVFEPKSSRIEPDNFINTLMAQTGLEGNVPANLVMIGLD 363 Query: 350 RVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN 409 P L IL+EWL R + RR R++ + +R+ IL G + A+L+IDE+I +IR Sbjct: 364 NRPAQKNLKTILQEWLDFRVSTVTRRLQHRLEQVLKRIHILDGRMTAFLHIDEVIRVIRE 423 Query: 410 EDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGK 469 D+PKP +++ F L+E Q + IL +RLR L +LE ++++ EL +L E+ + +LL Sbjct: 424 ADEPKPELMAAFGLSEIQAEDILEIRLRQLARLEGFKLEQELADLREEEGYLKNLLADEG 483 Query: 470 QQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW 529 + I +KE+ + + G R T V+ A++A L + EP+T+++S +GW Sbjct: 484 AKKKLI------IKEMQADAKQFGDPRRTL--VAEAERAALTHTTAD-EPVTLILSRQGW 534 Query: 530 IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEA 589 IRS H +DLSA FKEGD L+ L T D +++L T G++YT+ + GRG G Sbjct: 535 IRSRAGHGLDLSATAFKEGDELQQTLETRTVDPVVVLDTLGRSYTIDPAEIPGGRGDGVP 594 Query: 590 IQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649 + L++L ++ L+ S G FI + +++ + GK +K+ + E Sbjct: 595 LASLLELQPGASVLAMLAGQPQEHYLLAGSGGYGFIAKLGDLVGRVKAGKEVVKLEAGET 654 Query: 650 MKLVVKVTGD-------HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVIC 702 + + V + + + LL F I ++ M++G+G++L S + + Sbjct: 655 LLMPQPVHQSALINPDCRLVLASAEKHLLAFPIGELKVMAKGRGLQLMSLRGNDTLQLTA 714 Query: 703 FKICEGLTWIDSAGR--SYNRSENDLLGWLGKRGGVGSLV 740 + W+ S G+ + +R + GKRG G ++ Sbjct: 715 L-VSTPDFWVCSRGKRGAAHRERLRVQDIEGKRGRKGRML 753 >gi|308389734|gb|ADO32054.1| DNA topoisomerase IV subunit A [Neisseria meningitidis alpha710] gi|325130659|gb|EGC53400.1| DNA topoisomerase IV, A subunit [Neisseria meningitidis OX99.30304] gi|325136733|gb|EGC59333.1| DNA topoisomerase IV, A subunit [Neisseria meningitidis M0579] Length = 765 Score = 478 bits (1230), Expect = e-132, Method: Compositional matrix adjust. Identities = 277/749 (36%), Positives = 419/749 (55%), Gaps = 42/749 (5%) Query: 23 RFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEV 82 R+A E YL YA+S +K RA+P++ DG KPV RRI+ AM +MGL GA KSAR+VGE+ Sbjct: 17 RYA-ERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGEI 75 Query: 83 IGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAEL 142 +GK HPHGD S Y+++VR+AQ F RYPLI G GNFG+ DGD AAA RYTEAR+T +AEL Sbjct: 76 LGKYHPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAEL 135 Query: 143 ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEA 202 +L +++ VDF Y+ EP+ P++ P +L NG SGIAVGMAT IPSHN+ E+ +A Sbjct: 136 LLSEINQGTVDFVPNYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIPSHNLNEVTQA 195 Query: 203 ALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVG 262 A+AL+ P + L++YI PDF GG I+ + + Y G+G RVRAR+ +E++ Sbjct: 196 AIALLKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETGKGSVRVRARYEIEKLA 255 Query: 263 RGSWCIVVTEIPYQVQKSRLIEKIAELIIAK------------------RIPLLEDIRDE 304 RG W ++VTE+P ++++ +I E K + L++ +RDE Sbjct: 256 RGQWRVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDQLNTKKLMLDLIDRVRDE 315 Query: 305 S--AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362 S VR+V PK+ +D D + ++ + +E +N+ ++ + P L IL+ Sbjct: 316 SDGEHPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMMGLDNRPAQKNLKTILQ 375 Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422 EWL R + RR FR+ +++R+ IL+G L +L+IDE+I +IR D PK +++ F Sbjct: 376 EWLDFRTVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKVIRESDDPKADLMAAFG 435 Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482 LTE Q + IL +RLR L +LE ++++ EL+ L E+ +++ LL ++ I + Sbjct: 436 LTEIQAEDILEIRLRQLARLEGFKLEKELNELREEQGRLNILLGDENEKRKLI------I 489 Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542 KE+ + G R T E A +A L Q + EPIT+++S +GWIRS H++DLS Sbjct: 490 KEMQADMKQYGDARRTLVE--EAGRAVLTQTTAD-EPITLILSEKGWIRSRAGHNLDLSQ 546 Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602 FKEGD LK L T +++L + G+ YTL A + GRG G + LI+L + Sbjct: 547 TAFKEGDRLKQTLEGRTVLPVVILDSLGRTYTLDAAEIPGGRGDGVPVSSLIELQNGAKP 606 Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-- 660 V L+ SS G FI + ++++ + GK + S E + + V Sbjct: 607 VAMLTGLPEQHYLLSSSGGYGFIAKLADMVGRVKAGKVVMTTDSGETVLPPIAVYASSFI 666 Query: 661 ------VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDS 714 +A +NR L F I ++ M++GKG+++ + G S E I+S Sbjct: 667 NPDCKIIAATSQNRA-LAFPIGELKIMAKGKGLQIIGL-NAGESLTHTAVSSEPEILIES 724 Query: 715 AGRSYNRSENDLLGWL--GKRGGVGSLVP 741 GR ++ + L KRG G L+P Sbjct: 725 EGRRGAAHKDRIPVSLLEAKRGKKGKLLP 753 >gi|240014515|ref|ZP_04721428.1| DNA topoisomerase IV subunit A [Neisseria gonorrhoeae DGI18] gi|240079697|ref|ZP_04724240.1| DNA topoisomerase IV subunit A [Neisseria gonorrhoeae FA19] gi|240121037|ref|ZP_04733999.1| DNA topoisomerase IV subunit A [Neisseria gonorrhoeae PID24-1] gi|268595844|ref|ZP_06130011.1| DNA topoisomerase IV subunit A [Neisseria gonorrhoeae FA19] gi|293399703|ref|ZP_06643855.1| DNA topoisomerase IV, A subunit [Neisseria gonorrhoeae F62] gi|268549632|gb|EEZ44651.1| DNA topoisomerase IV subunit A [Neisseria gonorrhoeae FA19] gi|291609954|gb|EFF39077.1| DNA topoisomerase IV, A subunit [Neisseria gonorrhoeae F62] Length = 767 Score = 478 bits (1230), Expect = e-132, Method: Compositional matrix adjust. Identities = 277/749 (36%), Positives = 417/749 (55%), Gaps = 42/749 (5%) Query: 23 RFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEV 82 R+A E YL YA+S +K RA+P++ DG KPV RRI+ AM +MGL GA KSAR+VGE+ Sbjct: 19 RYA-ERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGEI 77 Query: 83 IGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAEL 142 +GK HPHGD S Y+++VR+AQ F RYPLI G GNFG+ DGD AAA RYTEAR+T +AEL Sbjct: 78 LGKYHPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAEL 137 Query: 143 ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEA 202 +L +++ VDF Y+ EP+ P++ P +L NG SGIAVGMAT IPSHN+ E+ +A Sbjct: 138 LLSEINQGTVDFMPNYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIPSHNLNEVTQA 197 Query: 203 ALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVG 262 A+AL+ P + L++YI PDF GG I+ + + Y G+G RVRAR+ +E++ Sbjct: 198 AIALLKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETGKGSVRVRARYEIEKLA 257 Query: 263 RGSWCIVVTEIPYQVQKSRLIEKIAELIIAK------------------RIPLLEDIRDE 304 RG W ++VTE+P ++++ +I E K + L++ +RDE Sbjct: 258 RGQWRVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDRLNTKKLMLDLIDRVRDE 317 Query: 305 S--AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362 S VR+V PK+ +D D + ++ + +E +N+ ++ + P L IL+ Sbjct: 318 SDGEHPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMMGLDNRPAQKNLKTILQ 377 Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422 EWL R + RR FR+ +++R+ IL+G L +L+IDE+I +IR D PK +++ F Sbjct: 378 EWLDFRIVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKVIRESDDPKADLMAAFG 437 Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482 LTE Q + IL +RLR L +LE ++++ EL+ L E+ +++ L ++ I + Sbjct: 438 LTEIQAEDILEIRLRQLARLEGFKLEKELNELREEQGRLNIFLGDENEKRKLI------I 491 Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542 KE+ + G R T E A +A L Q + EPIT+++S +GWIRS H++DLS Sbjct: 492 KEMQADMKQFGDARRTLVE--EAGRAVLTQTAAD-EPITLILSEKGWIRSRAGHNLDLSQ 548 Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602 FKEGD LK L T +++L + G+ Y++ A + GRG G I LI+L + Sbjct: 549 TAFKEGDRLKQTLEGRTVLPVVILDSSGRTYSIDAAEIPGGRGDGVPISSLIELQNGAKP 608 Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-- 660 V L+ SS G FI + +++ + GK + S E + V V Sbjct: 609 VAMLTGLPEQHYLLSSSGGYGFIAKLGDMVGRVKAGKVVMTADSGETVLPPVAVYASSFI 668 Query: 661 ------VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDS 714 +A +NR L F I ++ M++GKG+++ + G S E I+S Sbjct: 669 NPDCKIIAATSQNRA-LAFPIGELKIMAKGKGLQIIGL-NAGESMTHTAVSSEPEILIES 726 Query: 715 AGRSYNRSENDLLGWL--GKRGGVGSLVP 741 GR ++ L L KRG G L+P Sbjct: 727 EGRRGAAHKDRLPVALIEAKRGKKGRLLP 755 >gi|15677455|ref|NP_274611.1| DNA topoisomerase IV subunit A [Neisseria meningitidis MC58] gi|7226854|gb|AAF41957.1| topoisomerase IV subunit A [Neisseria meningitidis MC58] gi|316983853|gb|EFV62833.1| DNA topoisomerase IV, A subunit [Neisseria meningitidis H44/76] gi|325140750|gb|EGC63264.1| DNA topoisomerase IV, A subunit [Neisseria meningitidis CU385] gi|325199801|gb|ADY95256.1| DNA topoisomerase IV, A subunit [Neisseria meningitidis H44/76] Length = 767 Score = 478 bits (1229), Expect = e-132, Method: Compositional matrix adjust. Identities = 278/749 (37%), Positives = 418/749 (55%), Gaps = 42/749 (5%) Query: 23 RFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEV 82 R+A E YL YA+S +K RA+P++ DG KPV RRI+ AM +MGL GA KSAR+VGE+ Sbjct: 19 RYA-ERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGEI 77 Query: 83 IGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAEL 142 +GK HPHGD S Y+++VR+AQ F RYPLI G GNFG+ DGD AAA RYTEAR+T +AEL Sbjct: 78 LGKYHPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAEL 137 Query: 143 ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEA 202 +L +++ VDF Y+ EP+ P++ P +L NG SGIAVGMAT IP HN+ E+ +A Sbjct: 138 LLSEINQGTVDFVPNYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIPPHNLNEVTQA 197 Query: 203 ALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVG 262 A+AL+ P + L++YI PDF GG I+ + + Y G+G RVRAR+ +E++ Sbjct: 198 AIALLKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETGKGSVRVRARYEIEKLA 257 Query: 263 RGSWCIVVTEIPYQVQKSRLIEKIAELIIAK------------------RIPLLEDIRDE 304 RG W ++VTE+P ++++ +I E K + L++ +RDE Sbjct: 258 RGQWRVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDQLNTKKLMLDLIDRVRDE 317 Query: 305 S--AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362 S VR+V PK+ +D D + ++ + +E +N+ ++ + P L IL+ Sbjct: 318 SDGEHPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMMGLDNRPAQKNLKTILQ 377 Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422 EWL R + RR FR+ +++R+ IL+G L +L+IDE+I +IR D PK +++ F Sbjct: 378 EWLDFRTVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKVIRESDDPKADLMAAFG 437 Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482 LTE Q + IL +RLR L +LE ++++ EL+ L E+ +++ LL+ ++ I V Sbjct: 438 LTEIQAEDILEIRLRQLARLEGFKLEKELNELREEQGRLNILLSDENEKRKLI------V 491 Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542 KE+ + G R T E A +A L Q + EPIT+++S +GWIRS H++DLS Sbjct: 492 KEMQADMKQYGDARRTLVE--EAGRAVLTQTTAD-EPITLILSEKGWIRSRAGHNLDLSQ 548 Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602 FKEGD LK L T +++L + G+ YTL A + GRG G + LI+L + Sbjct: 549 TAFKEGDCLKQTLEGRTVLPVVILDSSGRTYTLDAAEIPGGRGDGVPVSSLIELQNGAKP 608 Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-- 660 V L+ SS G FI + +++ + GK + S E + V V Sbjct: 609 VAMLTGLPEQHYLLSSSSGYGFITKLGDMVGRVKAGKVVMTADSGETVLPPVAVYASSFI 668 Query: 661 ------VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDS 714 +A +NR L F I ++ M++GKG+++ + G S E I+S Sbjct: 669 NPDCKIIAATSQNRA-LAFPIGELKIMAKGKGLQIIGL-NAGESMTHTAVSSELEILIES 726 Query: 715 AGRSYNRSENDLLGWL--GKRGGVGSLVP 741 GR ++ + L KRG G L+P Sbjct: 727 EGRRGAAHKDRIPISLLEAKRGKKGRLLP 755 >gi|240016960|ref|ZP_04723500.1| DNA topoisomerase IV subunit A [Neisseria gonorrhoeae FA6140] gi|240125064|ref|ZP_04737950.1| DNA topoisomerase IV subunit A [Neisseria gonorrhoeae SK-92-679] gi|268683659|ref|ZP_06150521.1| ParC [Neisseria gonorrhoeae SK-92-679] gi|268623943|gb|EEZ56343.1| ParC [Neisseria gonorrhoeae SK-92-679] Length = 767 Score = 478 bits (1229), Expect = e-132, Method: Compositional matrix adjust. Identities = 277/749 (36%), Positives = 417/749 (55%), Gaps = 42/749 (5%) Query: 23 RFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEV 82 R+A E YL YA+S +K RA+P++ DG KPV RRI+ AM +MGL GA KSAR+VGE+ Sbjct: 19 RYA-ERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGEI 77 Query: 83 IGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAEL 142 +GK HPHGD S Y+++VR+AQ F RYPLI G GNFG+ DGD AAA RYTEAR+T +AEL Sbjct: 78 LGKYHPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAEL 137 Query: 143 ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEA 202 +L +++ VDF Y+ EP+ P++ P +L NG SGIAVGMAT IPSHN+ E+ +A Sbjct: 138 LLSEINQGTVDFMPNYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIPSHNLNEVTQA 197 Query: 203 ALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVG 262 A+AL+ P + L++YI PDF GG I+ + + Y G+G RVRAR+ +E++ Sbjct: 198 AIALLKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETGKGSVRVRARYEIEKLA 257 Query: 263 RGSWCIVVTEIPYQVQKSRLIEKIAELIIAK------------------RIPLLEDIRDE 304 RG W ++VTE+P ++++ +I E K + L++ +RDE Sbjct: 258 RGQWRVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDRLNTKKLMLDLIDRVRDE 317 Query: 305 S--AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362 S VR+V PK+ +D D + ++ + +E +N+ ++ + P L IL+ Sbjct: 318 SDGEHPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMMGLDNRPAQKNLKTILQ 377 Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422 EWL R + RR FR+ +++R+ IL+G L +L+IDE+I +IR D PK +++ F Sbjct: 378 EWLDFRVVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKVIRESDDPKADLMAVFG 437 Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482 LTE Q + IL +RLR L +LE ++++ EL+ L E+ +++ L ++ I + Sbjct: 438 LTEIQAEDILEIRLRQLARLEGFKLEKELNELREEQGRLNIFLGDENEKRKLI------I 491 Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542 KE+ + G R T E A +A L Q + EPIT+++S +GWIRS H++DLS Sbjct: 492 KEMQADMKQFGDARRTLVE--EAGRAVLTQTAAD-EPITLILSEKGWIRSRAGHNLDLSQ 548 Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602 FKEGD LK L T +++L + G+ Y++ A + GRG G I LI+L + Sbjct: 549 TAFKEGDRLKQTLEGRTVLPVVILDSSGRTYSIDAAEIPGGRGDGVPISSLIELQNGAKP 608 Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-- 660 V L+ SS G FI + +++ + GK + S E + V V Sbjct: 609 VAMLTGLPEQHYLLSSSGGYGFIAKLGDMVGRVKAGKVVMTADSGETVLPPVAVYASSFI 668 Query: 661 ------VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDS 714 +A +NR L F I ++ M++GKG+++ + G S E I+S Sbjct: 669 NPDCKIIAATSQNRA-LAFPIGELKIMAKGKGLQIIGL-NAGESMTHTAVSSEPEILIES 726 Query: 715 AGRSYNRSENDLLGWL--GKRGGVGSLVP 741 GR ++ L L KRG G L+P Sbjct: 727 EGRRGAAHKDRLPVALIEAKRGKKGRLLP 755 >gi|325128664|gb|EGC51532.1| DNA topoisomerase IV, A subunit [Neisseria meningitidis N1568] gi|325205664|gb|ADZ01117.1| DNA topoisomerase IV, A subunit [Neisseria meningitidis M04-240196] Length = 765 Score = 478 bits (1229), Expect = e-132, Method: Compositional matrix adjust. Identities = 280/765 (36%), Positives = 424/765 (55%), Gaps = 49/765 (6%) Query: 7 SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66 ++SNTL+ L E YL YA+S +K RA+P++ DG KPV RRI+ AM +MGL Sbjct: 8 TDSNTLM--------LGQYAERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGL 59 Query: 67 DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126 GA KSAR+VGE++GK HPHGD S Y+++VR+AQ F RYPLI G GNFG+ DGD A Sbjct: 60 TAGAKPVKSARVVGEILGKYHPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGA 119 Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186 AA RYTEAR+T +AEL+L +++ VDF Y+ EP+ P++ P +L NG SGIAVG Sbjct: 120 AAMRYTEARLTPIAELLLSEINQGTVDFVPNYDGAFDEPLHLPARLPMVLLNGASGIAVG 179 Query: 187 MATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLG 246 MAT IPSHN+ E+ +AA+AL+ P + L++YI PDF GG I+ + + Y G Sbjct: 180 MATEIPSHNLNEVTQAAIALLKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETG 239 Query: 247 RGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAK------------- 293 +G RVRAR+ +E++ RG W ++VTE+P ++++ +I E K Sbjct: 240 KGSVRVRARYEIEKLARGQWRVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDQL 299 Query: 294 -----RIPLLEDIRDES--AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL 346 + L++ +RDES VR+V PK+ +D D + ++ + +E +N+ ++ Sbjct: 300 NTKKLMLDLIDRVRDESDGEHPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMM 359 Query: 347 SMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAI 406 + P L IL+EWL R + RR FR+ +++R+ IL+G L +L+IDE+I + Sbjct: 360 GLDNRPAQKNLKTILQEWLDFRTVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKV 419 Query: 407 IRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466 IR D PK +++ F LTE Q + IL +RLR L +LE ++++ EL+ L E+ +++ LL Sbjct: 420 IRESDDPKADLMAAFGLTEIQAEDILEIRLRQLARLEGFKLEKELNELREEQGRLNILLG 479 Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526 ++ I +KE+ + G R T E A +A L Q + EPIT+++S Sbjct: 480 DENEKRKLI------IKEMQADMKQYGDARRTLVE--EAGRAVLTQTTAD-EPITLILSE 530 Query: 527 RGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH 586 +GWIRS H++DLS FKEGD LK L T +++L + G+ YTL A + GRG Sbjct: 531 KGWIRSRAGHNLDLSQTAFKEGDRLKQTLEGRTVLPVVILDSLGRTYTLDAAEIPGGRGD 590 Query: 587 GEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS 646 G + LI+L + V L+ SS G FI + ++++ + GK + S Sbjct: 591 GVPVSSLIELQNGAKPVAMLTGLPEQHYLLSSSGGYGFIAKLADMVGRVKAGKVVMTTDS 650 Query: 647 EEKMKLVVKVTGDH--------VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGIS 698 E + + V +A +NR L F I ++ M++GKG+++ + G S Sbjct: 651 GETVLPPIAVYASSFINPDCKIIAATSQNRA-LAFPIGELKIMAKGKGLQIIGL-NAGES 708 Query: 699 DVICFKICEGLTWIDSAGRSYNRSENDLLGWL--GKRGGVGSLVP 741 E I+S GR ++ + L KRG G L+P Sbjct: 709 LTHTAVSSEPEILIESEGRRGAAHKDRIPVSLLEAKRGKKGKLLP 753 >gi|261392159|emb|CAX49667.1| topoisomerase IV subunit A [Neisseria meningitidis 8013] Length = 765 Score = 478 bits (1229), Expect = e-132, Method: Compositional matrix adjust. Identities = 278/759 (36%), Positives = 419/759 (55%), Gaps = 62/759 (8%) Query: 23 RFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEV 82 R+A E YL YA+S +K RA+P++ DG KPV RRI+ AM +MGL GA KSAR+VGE+ Sbjct: 17 RYA-ERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGEI 75 Query: 83 IGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAEL 142 +GK HPHGD S Y+++VR+AQ F RYPLI G GNFG+ DGD AAA RYTEAR+T +AEL Sbjct: 76 LGKYHPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAEL 135 Query: 143 ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEA 202 +L +++ VDF Y+ EP+ P++ P +L NG SGIAVGMAT IPSHN+ E+ +A Sbjct: 136 LLSEINQGTVDFVPNYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIPSHNLNEVTQA 195 Query: 203 ALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVG 262 A+AL+ P + L++YI PDF GG I+ + + Y G+G RVRAR+ +E++ Sbjct: 196 AIALLKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETGKGSVRVRARYEIEKLA 255 Query: 263 RGSWCIVVTEIPYQVQKSRLIEKIAELIIAK------------------RIPLLEDIRDE 304 RG W ++VTE+P ++++ +I E K + L++ +RDE Sbjct: 256 RGQWRVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDQLNTKKLMLDLIDRVRDE 315 Query: 305 S--AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362 S VR+V PK+ +D D + ++ + +E +N+ ++ + P L IL+ Sbjct: 316 SDGEHPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMMGLDNRPAQKNLKTILQ 375 Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422 EWL R + RR FR+ +++R+ IL+G L +L+IDE+I +IR D PK +++ F Sbjct: 376 EWLDFRTVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKVIRESDDPKADLMAAFG 435 Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482 LTE Q + IL +RLR L +LE ++++ EL+ L E+ +++ LL ++ I + Sbjct: 436 LTEIQAEDILEIRLRQLARLEGFKLEKELNELREEQGRLNILLGDENEKRKLI------I 489 Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542 KE+ + G R T E A +A L Q + EPIT+++S +GWIRS H++DLS Sbjct: 490 KEMQADMKQYGDARRTLVE--EAGRAVLTQTTAD-EPITLILSEKGWIRSRAGHNLDLSQ 546 Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602 FKEGD LK L T +++L + G+ YTL A + GRG G + LI+L + Sbjct: 547 TAFKEGDRLKQTLEGRTVLPVVILDSLGRTYTLDAAEIPGGRGDGVPVSSLIELQNGAKP 606 Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-- 660 V L+ SS G FI + ++++ + GK + S E + + V Sbjct: 607 VAMLTGLPEQHYLLSSSGGYGFIAKLADMVGRVKAGKVVMTTDSGETVLPPIAVYASSFI 666 Query: 661 ------VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLT---- 710 +A +NR L F I ++ M++GKG++ +I E LT Sbjct: 667 NPDCKIIAATSQNRA-LAFPIGELKIMAKGKGLQ-----------IIGLNASESLTHTAV 714 Query: 711 ------WIDSAGRSYNRSENDLLGWL--GKRGGVGSLVP 741 I+S GR ++ + L KRG G L+P Sbjct: 715 SSEPEILIESEGRRGAAHKDRIPVSLLEAKRGKKGKLLP 753 >gi|309378367|emb|CBX23013.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 767 Score = 477 bits (1228), Expect = e-132, Method: Compositional matrix adjust. Identities = 278/749 (37%), Positives = 418/749 (55%), Gaps = 42/749 (5%) Query: 23 RFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEV 82 R+A E YL YA+S +K RA+P++ DG KPV RRI+ AM +MGL GA KSAR+VGE+ Sbjct: 19 RYA-ERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGEI 77 Query: 83 IGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAEL 142 +GK HPHGD S Y+++VR+AQ F RYPLI G GNFG+ DGD AAA RYTEAR+T +AEL Sbjct: 78 LGKYHPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAEL 137 Query: 143 ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEA 202 +L +++ VDF Y+ EPV P++ P +L NG SGIAVGMAT IPSHN+ E+ +A Sbjct: 138 LLSEINQGTVDFVPNYDGAFDEPVHLPARLPMVLLNGASGIAVGMATEIPSHNLNEVTQA 197 Query: 203 ALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVG 262 A+AL+ P + L++YI PDF GG I+ + + Y G+G RVRAR+ +E++ Sbjct: 198 AIALLKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETGKGSVRVRARYEIEKLA 257 Query: 263 RGSWCIVVTEIPYQVQKSRLIEKIAELIIAK------------------RIPLLEDIRDE 304 RG W ++VTE+P ++++ +I E K + L++ +RDE Sbjct: 258 RGQWRVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDQLNTKKLMLDLIDRVRDE 317 Query: 305 S--AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362 S VR+V PK+ +D D + ++ + +E +N+ ++ + P L IL+ Sbjct: 318 SDGEHPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMMGLDNRPAQKNLKTILQ 377 Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422 EWL R + RR FR+ +++R+ IL+G L +L+IDE+I +IR D PK ++ F Sbjct: 378 EWLDFRTVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKVIRESDDPKADLMEAFG 437 Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482 LTE Q + IL +RLR L +LE ++++ EL+ L E+ +++ LL ++ + + Sbjct: 438 LTEIQAEDILEIRLRQLARLEGFKLEKELNELREEQGRLNILLGDENEKRKLM------I 491 Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542 KE+ + G R T E A +A L Q + EPIT+++S +GWIRS H++DLS Sbjct: 492 KEMQADMKQYGDARRTLVE--EAGRAVLTQTTAD-EPITLILSEKGWIRSRAGHNLDLSQ 548 Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602 FKEGD LK L T +++L + G+ YTL A + GRG G + LI+L + Sbjct: 549 TAFKEGDCLKQTLEGRTVLPVVILDSLGRTYTLDAAEIPGGRGDGVPVSSLIELQNGAKP 608 Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-- 660 V L+ SS G FI + ++++ + GK + S E + V V Sbjct: 609 VAMLTGLPEQHYLLSSSGGYGFIAKLADMVGRVKAGKVVMTADSGETVLPPVAVYASSFI 668 Query: 661 ------VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDS 714 +A +NR L F I ++ M++GKG+++ + G S E I+S Sbjct: 669 NPDCKIIAATNQNRA-LAFPIGELKIMAKGKGLQIIGL-NTGESMTHTAVSSEPEILIES 726 Query: 715 AGRSYNRSENDLLGWL--GKRGGVGSLVP 741 GR ++ + L KRG G L+P Sbjct: 727 EGRRGAAHKDRIPVSLLEAKRGKKGRLLP 755 >gi|59801618|ref|YP_208330.1| DNA topoisomerase IV subunit A [Neisseria gonorrhoeae FA 1090] gi|59718513|gb|AAW89918.1| DNA topoisomerase IV subunit A [Neisseria gonorrhoeae FA 1090] Length = 767 Score = 477 bits (1227), Expect = e-132, Method: Compositional matrix adjust. Identities = 276/749 (36%), Positives = 417/749 (55%), Gaps = 42/749 (5%) Query: 23 RFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEV 82 R+A E YL YA+S +K RA+P++ DG KPV RRI+ AM +MGL GA KSAR+VGE+ Sbjct: 19 RYA-ERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGEI 77 Query: 83 IGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAEL 142 +GK HPHGD S Y+++VR+AQ F RYPLI G GNFG+ DGD AAA RYTEAR+T +AEL Sbjct: 78 LGKYHPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAEL 137 Query: 143 ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEA 202 +L +++ VDF Y+ EP+ P++ P +L NG SGIAVGMAT IPSHN+ E+ +A Sbjct: 138 LLSEINQGTVDFMPNYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIPSHNLNEVTQA 197 Query: 203 ALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVG 262 A+AL+ P + L++YI PDF GG I+ + + Y G+G RVRAR+ +E++ Sbjct: 198 AIALLKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETGKGSVRVRARYEIEKLA 257 Query: 263 RGSWCIVVTEIPYQVQKSRLIEKIAELIIAK------------------RIPLLEDIRDE 304 RG W ++VTE+P ++++ +I E K + L++ +RDE Sbjct: 258 RGQWRVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDRLNTKKLMLDLIDRVRDE 317 Query: 305 S--AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362 S VR+V PK+ +D D + ++ + +E +N+ ++ + P L IL+ Sbjct: 318 SDGEHPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMMGLDNRPAQKNLKTILQ 377 Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422 EWL R + RR FR+ +++R+ IL+G L +L+IDE+I +IR D PK +++ F Sbjct: 378 EWLDFRVVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKVIRESDDPKADLMAVFG 437 Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482 LTE Q + IL +RLR L +LE ++++ EL+ L E+ +++ L ++ I + Sbjct: 438 LTEIQAEDILEIRLRQLARLEGFKLEKELNELREEQGRLNIFLGDENEKRKLI------I 491 Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542 KE+ + G R T E A +A L Q + EPIT+++S +GWIRS H++DLS Sbjct: 492 KEMQADMKQFGDARRTLVE--EAGRAVLTQTAAD-EPITLILSEKGWIRSRAGHNLDLSQ 548 Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602 FKEGD LK L T +++L + G+ Y++ A + GRG G + LI+L + Sbjct: 549 TAFKEGDRLKQTLEGRTVLPVVILDSSGRTYSIDAAEIPGGRGDGVPVSSLIELQNGAKP 608 Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-- 660 V L+ SS G FI + +++ + GK + S E + V V Sbjct: 609 VAMLTGLPEQHYLLSSSGGYGFIAKLGDMVGRVKAGKVVMTADSGETVLPPVAVYASSFI 668 Query: 661 ------VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDS 714 +A +NR L F I ++ M++GKG+++ + G S E I+S Sbjct: 669 NPDCKIIAATSQNRA-LAFPIGELKIMAKGKGLQIIGL-NAGESMTHTAVSSEPEILIES 726 Query: 715 AGRSYNRSENDLLGWL--GKRGGVGSLVP 741 GR ++ L L KRG G L+P Sbjct: 727 EGRRGAAHKDRLPVALIEAKRGKKGRLLP 755 >gi|240113730|ref|ZP_04728220.1| DNA topoisomerase IV subunit A [Neisseria gonorrhoeae MS11] gi|254494487|ref|ZP_05107658.1| DNA topoisomerase 4 subunit A [Neisseria gonorrhoeae 1291] gi|268599802|ref|ZP_06133969.1| ParC [Neisseria gonorrhoeae MS11] gi|226513527|gb|EEH62872.1| DNA topoisomerase 4 subunit A [Neisseria gonorrhoeae 1291] gi|268583933|gb|EEZ48609.1| ParC [Neisseria gonorrhoeae MS11] Length = 767 Score = 477 bits (1227), Expect = e-132, Method: Compositional matrix adjust. Identities = 276/749 (36%), Positives = 417/749 (55%), Gaps = 42/749 (5%) Query: 23 RFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEV 82 R+A E YL YA+S +K RA+P++ DG KPV RRI+ AM +MGL GA KSAR+VGE+ Sbjct: 19 RYA-ERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGEI 77 Query: 83 IGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAEL 142 +GK HPHGD S Y+++VR+AQ F RYPLI G GNFG+ DGD AAA RYTEAR+T +AEL Sbjct: 78 LGKYHPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAEL 137 Query: 143 ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEA 202 +L +++ VDF Y+ EP+ P++ P +L NG SGIAVGMAT IPSHN+ E+ +A Sbjct: 138 LLSEINQGTVDFMPNYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIPSHNLNEVTQA 197 Query: 203 ALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVG 262 A+AL+ P + L++YI PDF GG I+ + + Y G+G RVRAR+ +E++ Sbjct: 198 AIALLKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETGKGSVRVRARYEIEKLA 257 Query: 263 RGSWCIVVTEIPYQVQKSRLIEKIAELIIAK------------------RIPLLEDIRDE 304 RG W ++VTE+P ++++ +I E K + L++ +RDE Sbjct: 258 RGQWRVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDRLNTKKLMLDLIDRVRDE 317 Query: 305 S--AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362 S VR+V PK+ +D D + ++ + +E +N+ ++ + P L IL+ Sbjct: 318 SDGEHPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMMGLDNRPAQKNLKTILQ 377 Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422 EWL R + RR FR+ +++R+ IL+G L +L+IDE+I +IR D PK +++ F Sbjct: 378 EWLDFRIVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKVIRESDDPKADLMAVFG 437 Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482 LTE Q + IL +RLR L +LE ++++ EL+ L E+ +++ L ++ I + Sbjct: 438 LTEIQAEDILEIRLRQLARLEGFKLEKELNELREEQGRLNIFLGDENEKRKLI------I 491 Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542 KE+ + G R T E A +A L Q + EPIT+++S +GWIRS H++DLS Sbjct: 492 KEMQADMKQFGDARRTLVE--EAGRAVLTQTAAD-EPITLILSEKGWIRSRAGHNLDLSQ 548 Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602 FKEGD LK L T +++L + G+ Y++ A + GRG G + LI+L + Sbjct: 549 TAFKEGDRLKQTLEGRTVLPVVILDSSGRTYSIDAAEIPGGRGDGVPVSSLIELQNGAKP 608 Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-- 660 V L+ SS G FI + +++ + GK + S E + V V Sbjct: 609 VAMLTGLPEQHYLLSSSGGYGFIAKLGDMVGRVKAGKVVMTADSGETVLPPVAVYASSFI 668 Query: 661 ------VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDS 714 +A +NR L F I ++ M++GKG+++ + G S E I+S Sbjct: 669 NPDCKIIAATSQNRA-LAFPIGELKIMAKGKGLQIIGL-NAGESMTHTAVSSEPEILIES 726 Query: 715 AGRSYNRSENDLLGWL--GKRGGVGSLVP 741 GR ++ L L KRG G L+P Sbjct: 727 EGRRGAAHKDRLPVALIEAKRGKKGRLLP 755 >gi|317163603|gb|ADV07144.1| DNA topoisomerase IV subunit A [Neisseria gonorrhoeae TCDC-NG08107] Length = 767 Score = 476 bits (1225), Expect = e-132, Method: Compositional matrix adjust. Identities = 276/749 (36%), Positives = 417/749 (55%), Gaps = 42/749 (5%) Query: 23 RFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEV 82 R+A E YL YA+S +K RA+P++ DG KPV RRI+ AM +MGL GA KSAR+VGE+ Sbjct: 19 RYA-ERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGEI 77 Query: 83 IGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAEL 142 +GK HPHGD+ Y+++VR+AQ F RYPLI G GNFG+ DGD AAA RYTEAR+T +AEL Sbjct: 78 LGKYHPHGDRPAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAEL 137 Query: 143 ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEA 202 +L +++ VDF Y+ EP+ P++ P +L NG SGIAVGMAT IPSHN+ E+ +A Sbjct: 138 LLSEINQGTVDFMPNYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIPSHNLNEVTQA 197 Query: 203 ALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVG 262 A+AL+ P + L++YI PDF GG I+ + + Y G+G RVRAR+ +E++ Sbjct: 198 AIALLKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETGKGSVRVRARYEIEKLA 257 Query: 263 RGSWCIVVTEIPYQVQKSRLIEKIAELIIAK------------------RIPLLEDIRDE 304 RG W ++VTE+P ++++ +I E K + L++ +RDE Sbjct: 258 RGQWRVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDRLNTKKLMLDLIDRVRDE 317 Query: 305 S--AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362 S VR+V PK+ +D D + ++ + +E +N+ ++ + P L IL+ Sbjct: 318 SDGEHPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMMGLDNRPAQKNLKTILQ 377 Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422 EWL R + RR FR+ +++R+ IL+G L +L+IDE+I +IR D PK +++ F Sbjct: 378 EWLDFRVVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKVIRESDDPKADLMAVFG 437 Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482 LTE Q + IL +RLR L +LE ++++ EL+ L E+ +++ L ++ I + Sbjct: 438 LTEIQAEDILEIRLRQLARLEGFKLEKELNELREEQGRLNIFLGDENEKRKLI------I 491 Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542 KE+ + G R T E A +A L Q + EPIT+++S +GWIRS H++DLS Sbjct: 492 KEMQADMKQFGDARRTLVE--EAGRAVLTQTAAD-EPITLILSEKGWIRSRAGHNLDLSQ 548 Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602 FKEGD LK L T +++L + G+ Y++ A + GRG G I LI+L + Sbjct: 549 TAFKEGDRLKQTLEGRTVLPVVILDSSGRTYSIDAAEIPGGRGDGVPISSLIELQNGAKP 608 Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-- 660 V L+ SS G FI + +++ + GK + S E + V V Sbjct: 609 VAMLTGLPEQHYLLSSSGGYGFIAKLGDMVGRVKAGKVVMTADSGETVLPPVAVYASSFI 668 Query: 661 ------VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDS 714 +A +NR L F I ++ M++GKG+++ + G S E I+S Sbjct: 669 NPDCKIIAATSQNRA-LAFPIGELKIMAKGKGLQIIGL-NAGESMTHTAVSSEPEILIES 726 Query: 715 AGRSYNRSENDLLGWL--GKRGGVGSLVP 741 GR ++ L L KRG G L+P Sbjct: 727 EGRRGAAHKDRLPVALIEAKRGKKGRLLP 755 >gi|304386981|ref|ZP_07369239.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Neisseria meningitidis ATCC 13091] gi|304338938|gb|EFM05034.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Neisseria meningitidis ATCC 13091] Length = 780 Score = 476 bits (1225), Expect = e-132, Method: Compositional matrix adjust. Identities = 277/745 (37%), Positives = 416/745 (55%), Gaps = 41/745 (5%) Query: 27 EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86 E YL YA+S +K RA+P++ DG KPV RRI+ AM +MGL GA KSAR+VGE++GK Sbjct: 35 ERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGEILGKY 94 Query: 87 HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQG 146 HPHGD S Y+++VR+AQ F RYPLI G GNFG+ DGD AAA RYTEAR+T +AEL+L Sbjct: 95 HPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAELLLSE 154 Query: 147 VDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALAL 206 +++ VDF Y+ EP+ P++ P +L NG SGIAVGMAT IPSHN+ E+ +AA+AL Sbjct: 155 INQGTVDFVPNYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIPSHNLNEVTQAAIAL 214 Query: 207 IDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSW 266 + P + L++YI PDF GG I+ + + Y G+G RVRAR+ +E++ RG W Sbjct: 215 LKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETGKGRVRVRARYEIEKLARGQW 274 Query: 267 CIVVTEIPYQVQKSRLIEKIAELIIAK------------------RIPLLEDIRDES--A 306 ++VTE+P ++++ +I E K + L++ +RDES Sbjct: 275 RVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDQLNTKKLMLDLIDRVRDESDGE 334 Query: 307 EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366 VR+V PK+ +D D + ++ + +E +N+ ++ + P L IL+EWL Sbjct: 335 HPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMMGLDNRPAQKNLKTILQEWLD 394 Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426 R + RR FR+ +++R+ IL+G L +L+IDE+I +IR D PK +++ F LTE Sbjct: 395 FRVVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKVIRESDDPKTDLMAAFGLTEI 454 Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486 Q + IL +RLR L +LE ++++ EL+ L E+ +++ LL+ ++ I VKE+ Sbjct: 455 QAEDILEIRLRQLARLEGFKLEKELNELREEQGRLNILLSDENEKRKLI------VKEMQ 508 Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546 + G R T E A +A L Q + EPIT+++S +GWIRS H++DLS FK Sbjct: 509 ADMKQYGDARRTLVE--EAGRAVLTQTTAD-EPITLILSEKGWIRSRAGHNLDLSQTAFK 565 Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606 EGD LK L T +++L + G+ YTL A + GRG G + LI+L + V Sbjct: 566 EGDCLKQTLEGRTILPVVILDSSGRTYTLDAAEIPGGRGDGVPVSSLIELQNGAKPVAML 625 Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH------ 660 L+ SS G FI + +++ + GK + S E + V V Sbjct: 626 TGLPEQHYLLSSSGGYGFIAKLGDMVGRVKAGKVVMTADSGETVLPPVAVYASSFINPDC 685 Query: 661 --VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718 +A +NR L F I ++ M++GKG+++ + G S E I+S GR Sbjct: 686 KIIAATSQNRA-LAFPIGELKIMAKGKGLQIIGL-NAGESMTHTAVSSELEILIESEGRR 743 Query: 719 YNRSENDLLGWL--GKRGGVGSLVP 741 ++ + L KRG G L+P Sbjct: 744 GAAHKDRIPISLLEAKRGKKGRLLP 768 >gi|325134719|gb|EGC57358.1| DNA topoisomerase IV, A subunit [Neisseria meningitidis M13399] gi|325144839|gb|EGC67127.1| DNA topoisomerase IV, A subunit [Neisseria meningitidis M01-240013] Length = 767 Score = 476 bits (1225), Expect = e-132, Method: Compositional matrix adjust. Identities = 276/749 (36%), Positives = 418/749 (55%), Gaps = 42/749 (5%) Query: 23 RFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEV 82 R+A E YL YA+S +K RA+P++ DG KPV RRI+ AM +MGL GA KSAR+VGE+ Sbjct: 19 RYA-ERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGEI 77 Query: 83 IGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAEL 142 +GK HPHGD S Y+++VR+AQ F RYPLI G GNFG+ DGD AAA RYTEAR+T +AEL Sbjct: 78 LGKYHPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAEL 137 Query: 143 ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEA 202 +L +++ VDF Y+ EP+ P++ P +L NG SGIAVGMAT IP HN+ E+ +A Sbjct: 138 LLSEINQGTVDFVPNYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIPPHNLNEVTQA 197 Query: 203 ALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVG 262 A+AL+ P + L++YI PDF GG I+ + + Y G+G RVRAR+ +E++ Sbjct: 198 AIALLKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETGKGSVRVRARYEIEKLA 257 Query: 263 RGSWCIVVTEIPYQVQKSRLIEKIAELIIAK------------------RIPLLEDIRDE 304 RG W ++VTE+P ++++ +I E K + L++ +RDE Sbjct: 258 RGQWRVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDQLNTKKLMLDLIDRVRDE 317 Query: 305 S--AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362 S VR+V PK+ +D D + ++ + +E +N+ ++ + P L IL+ Sbjct: 318 SDGEHPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMMGLDNRPAQKNLKTILQ 377 Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422 EWL R + RR FR+ +++R+ IL+G L +L+IDE+I +IR D PK +++ F Sbjct: 378 EWLDFRTVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKVIRESDDPKADLMAAFG 437 Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482 LTE Q + IL +RLR L +LE ++++ EL+ L E+ +++ LL ++ I + Sbjct: 438 LTEIQAEDILEIRLRQLARLEGFKLEKELNELREEQGRLNILLGDENEKRKLI------I 491 Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542 KE+ + G R T E A +A L Q + EPIT+++S +GWIRS H++DLS Sbjct: 492 KEMQADMKQYGDARRTLVE--EAGRAVLTQTTAD-EPITLILSEKGWIRSRAGHNLDLSQ 548 Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602 FKEGD LK L T +++L + G+ YTL A + GRG G + LI+L + Sbjct: 549 TAFKEGDRLKQTLEGRTVLPVVILDSLGRTYTLDAAEIPGGRGDGVPVSSLIELQNGAKP 608 Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-- 660 V L+ SS G FI + ++++ + GK + S E + + V Sbjct: 609 VAMLTGLPEQHYLLSSSGGYGFIAKLADMVGRVKAGKVVMTTDSGETVLPPIAVYASSFI 668 Query: 661 ------VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDS 714 +A +NR L F I ++ M++GKG+++ + G S E I+S Sbjct: 669 NPDCKIIAATSQNRA-LAFPIGELKIMAKGKGLQIIGL-NAGESLTHTAVSSEPEILIES 726 Query: 715 AGRSYNRSENDLLGWL--GKRGGVGSLVP 741 GR ++ + L KRG G L+P Sbjct: 727 EGRRGAAHKDRIPVSLLEAKRGKKGKLLP 755 >gi|148244443|ref|YP_001219137.1| DNA topoisomerase IV subunit A [Candidatus Vesicomyosocius okutanii HA] gi|146326270|dbj|BAF61413.1| DNA topoisomerase IV subunit A [Candidatus Vesicomyosocius okutanii HA] Length = 745 Score = 476 bits (1224), Expect = e-132, Method: Compositional matrix adjust. Identities = 271/734 (36%), Positives = 438/734 (59%), Gaps = 30/734 (4%) Query: 27 EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86 E YL Y++ I +RA+P + DG KPV RRII+AMSE+GL A FKKSAR VG+V+GK Sbjct: 16 ERAYLDYSMYVILDRALPFVGDGLKPVQRRIIYAMSELGLKSTAKFKKSARTVGDVLGKF 75 Query: 87 HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQVAELILQ 145 HPHGD + Y+S+V +AQ F RYP I GQGN+G D S AA RYTE+++++ A+L+L Sbjct: 76 HPHGDSACYESMVLMAQKFSYRYPFIDGQGNWGAPDNPKSFAAMRYTESKLSRYADLLLL 135 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 +++ V++ D ++ EP P++ PNLL NG SGIAVGMAT +P HN+ E+ A + Sbjct: 136 EINQGTVNWTDNFDGSLQEPKNLPAQVPNLLLNGASGIAVGMATDVPPHNLIEVVSACIV 195 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265 L+DNP I ++ +++ I PD+PT IV S + + Y G G ++RA + E +G+ Sbjct: 196 LLDNPSIDLDDIMQTIQAPDYPTDADIVSSSADLRQIYDTGYGSVKMRAVYQKE---KGN 252 Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFPKNRSLDPD 323 IV+ +P+QV +++I +I + AK++PL++DIRDES + RIV+ + D D Sbjct: 253 --IVIEALPFQVSGAKVISQIVVQMRAKKLPLVDDIRDESDHENPTRIVIILHSNRFDVD 310 Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383 LM +F +++E + +NMNV+ + P+V+PL +LKEWL++R +V+ R + R I Sbjct: 311 ALMLHLFATTELEKNYRVNMNVIGLDGKPRVLPLIPMLKEWLSYRMQVVTNRLTCRFDKI 370 Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLE 443 R+ ILKGLLIA LNI+E+IA+IR DKPK V+++ F L Q +AIL L+LR L KLE Sbjct: 371 IVRLHILKGLLIALLNINEVIAVIREYDKPKLVLINHFKLNTIQAEAILELKLRHLAKLE 430 Query: 444 EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG-RRRTTFCEV 502 E +I++E L+ E+++++ LL+S + + KE+ D G RR+ Sbjct: 431 EVRIRTEQQELVLERKQLELLLSSNSR------LKSLIKKELKIIIKDFGDERRSNIKSN 484 Query: 503 SRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDR 562 +A + ++ E +TVV+SN+GW+R +K H +D + L++K GDS ++ + Sbjct: 485 VNVAQAFSEDNLVLAEDVTVVLSNKGWVRRVKGHDIDPTTLNYKAGDSYLTSVKGKSNKM 544 Query: 563 ILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGN 622 ++ + + G++Y+L A +L + RG GE + + + + ++ +L+ S G Sbjct: 545 VIFIDSTGRSYSLLAHSLSNSRGQGEPLTGKLSPPLGAQFIDIIMGKTSQNILLSSDVGY 604 Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV--TGDHVAVVGENR-KLLIFSIDQIP 679 FI +++++ + GK FL +S ++ V+ V + + + NR +LLIFSI ++P Sbjct: 605 GFIATFDDLLSSRQTGKVFLSLSKGAQVMRVINVDDVDNQLVALATNRGRLLIFSISELP 664 Query: 680 EMSRGKGVRL--------QSYKDGGISDVICFKICEGLTWIDSAGRSYNRSE-NDLLGWL 730 +S+GKG +L ++ ++ S I F+ + +AG+ Y + DL ++ Sbjct: 665 MLSKGKGNKLIQIPVNSAKTRQEFVASVCILFETQQLRV---NAGKHYLTIKFQDLNNYI 721 Query: 731 GKRGGVGSLVPKGF 744 R G L+PKG+ Sbjct: 722 SNRACRGKLLPKGY 735 >gi|269214097|ref|ZP_05983595.2| DNA topoisomerase IV, A subunit [Neisseria cinerea ATCC 14685] gi|269144559|gb|EEZ70977.1| DNA topoisomerase IV, A subunit [Neisseria cinerea ATCC 14685] Length = 752 Score = 476 bits (1224), Expect = e-132, Method: Compositional matrix adjust. Identities = 275/751 (36%), Positives = 417/751 (55%), Gaps = 53/751 (7%) Query: 27 EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86 E YL YA+S +K RA+P++ DG KPV RRI+ AM +MGL GA KSAR+VGE++GK Sbjct: 7 ERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGLAAGAKPVKSARVVGEILGKY 66 Query: 87 HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQG 146 HPHGD S Y+++VR+AQ F RYPLI G GNFG+ DGD AAA RYTEAR+T +AEL+L Sbjct: 67 HPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAELLLSE 126 Query: 147 VDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALAL 206 +++ VDF Y+ EP+ P++ P +L NG SGIAVGMAT IPSHN+ E+ +AA+AL Sbjct: 127 INQGTVDFVPNYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIPSHNLNEVTQAAIAL 186 Query: 207 IDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSW 266 + P + L++YI PDF GG I+ + + Y G+G RVRAR+ +E++ RG W Sbjct: 187 LKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETGKGSVRVRARYEIEKLARGQW 246 Query: 267 CIVVTEIPYQVQKSRLIEKIAELIIAK------------------RIPLLEDIRDES--A 306 ++VTE+P ++++ +I E K + L++ +RDES Sbjct: 247 RVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDQLNTKKLMLDLIDRVRDESDGE 306 Query: 307 EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366 VR+V PK+ +D D + ++ + +E +N+ ++ + P L IL+EWL Sbjct: 307 HPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMMGLDNRPAQKNLKTILQEWLD 366 Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426 R + RR FR+ +++R+ IL+G L +L+IDE+I +IR D PK +++ F LTE Sbjct: 367 FRVVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKVIRESDDPKADLMAAFGLTEI 426 Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486 Q + IL +RLR L +LE ++++ EL+ L E+ +++ LL ++ I +KE+ Sbjct: 427 QAEDILEIRLRQLARLEGFKLEKELNELREEQGRLNILLGDENEKRKLI------IKEMQ 480 Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546 + G R T E A +A L Q + EPIT+++S +GWIRS H++DLS FK Sbjct: 481 ADMKQFGDARRTLVE--EAGRAVLTQTTAD-EPITLILSEKGWIRSRAGHNLDLSQTAFK 537 Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606 EGD LK L T +++L + G+ YTL A + GRG G + LI+L + V Sbjct: 538 EGDRLKQTLEGRTVLPVVILDSLGRTYTLDAAEIPGGRGDGVPVSSLIELQNGAKPVAML 597 Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH------ 660 L+ S G FI + ++++ + GK + V S E + V V Sbjct: 598 TGQPEQHYLLSGSGGYGFITKLADMVGRVKAGKVVMTVDSGETVLPPVAVYASSLINPDC 657 Query: 661 --VAVVGENRKLLIFSIDQIPEMSRGKGVRL------QSYKDGGISDVICFKICEGLTWI 712 +A +NR + F I ++ M +GKG+++ +S G+S E I Sbjct: 658 KIIAATNQNRA-ISFPIGELKIMPKGKGLQIIGLNAGESMTHTGVS-------SETEILI 709 Query: 713 DSAGRSYNRSENDLLGWL--GKRGGVGSLVP 741 +S G+ ++ + L KRG G L+P Sbjct: 710 ESEGKRGAAHKDRIPVSLLEAKRGKKGKLLP 740 >gi|240127046|ref|ZP_04739707.1| DNA topoisomerase IV subunit A [Neisseria gonorrhoeae SK-93-1035] gi|268685400|ref|ZP_06152262.1| ParC [Neisseria gonorrhoeae SK-93-1035] gi|268625684|gb|EEZ58084.1| ParC [Neisseria gonorrhoeae SK-93-1035] Length = 767 Score = 476 bits (1224), Expect = e-132, Method: Compositional matrix adjust. Identities = 276/749 (36%), Positives = 416/749 (55%), Gaps = 42/749 (5%) Query: 23 RFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEV 82 R+A E YL YA+S +K RA+P++ DG KPV RRI+ AM +MGL GA KSAR+VGE+ Sbjct: 19 RYA-ERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGEI 77 Query: 83 IGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAEL 142 +GK HPHGD S Y+++VR+AQ F RYPLI G GNFG+ DGD AAA RYTEAR+T +AEL Sbjct: 78 LGKYHPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAEL 137 Query: 143 ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEA 202 +L +++ VDF Y+ EP+ P++ P +L NG SGIAVGMAT IPSHN+ E+ +A Sbjct: 138 LLSEINQGTVDFMPNYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIPSHNLNEVTQA 197 Query: 203 ALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVG 262 A+AL+ P + L++YI PDF GG I+ + + Y G+G RVRAR+ +E++ Sbjct: 198 AIALLKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETGKGSVRVRARYEIEKLA 257 Query: 263 RGSWCIVVTEIPYQVQKSRLIEKIAELIIAK------------------RIPLLEDIRDE 304 RG W ++VTE+P ++++ +I E K + L++ +RDE Sbjct: 258 RGQWRVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDRLNTKKLMLDLIDRVRDE 317 Query: 305 S--AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362 S VR+V PK+ +D D + ++ + +E +N+ ++ + P L IL+ Sbjct: 318 SDGEHPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMMGLDNRPAQKNLKTILQ 377 Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422 EWL R + RR FR+ +++R+ IL+G L +L+IDE+I IR D PK +++ F Sbjct: 378 EWLDFRIVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKAIRESDDPKADLMAAFG 437 Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482 LTE Q + IL +RLR L +LE ++++ EL+ L E+ +++ L ++ I + Sbjct: 438 LTEIQAEDILEIRLRQLARLEGFKLEKELNELREEQGRLNIFLGDENEKRKLI------I 491 Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542 KE+ + G R T E A +A L Q + EPIT+++S +GWIRS H++DLS Sbjct: 492 KEMQADMKQFGDARRTLVE--EAGRAVLTQTAAD-EPITLILSEKGWIRSRAGHNLDLSQ 548 Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602 FKEGD LK L T +++L + G+ Y++ A + GRG G + LI+L + Sbjct: 549 TAFKEGDRLKQTLEGRTVLPVVILDSSGRTYSIDAAEIPGGRGDGVPVSSLIELQNGAKP 608 Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-- 660 V L+ SS G FI + +++ + GK + S E + V V Sbjct: 609 VAMLTGLPEQHYLLSSSGGYGFIAKLGDMVGRVKAGKVVMTADSGETVLPPVAVYASSFI 668 Query: 661 ------VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDS 714 +A +NR L F I ++ M++GKG+++ + G S E I+S Sbjct: 669 NPDCKIIAATSQNRA-LAFPIGELKIMAKGKGLQIIGL-NAGESMTHTAVSSEPEILIES 726 Query: 715 AGRSYNRSENDLLGWL--GKRGGVGSLVP 741 GR ++ L L KRG G L+P Sbjct: 727 EGRRGAAHKDRLPVALIEAKRGKKGRLLP 755 >gi|297180057|gb|ADI16282.1| type IIa topoisomerase (DNA gyrase/topo II, topoisomerase IV), a subunit [uncultured bacterium HF0010_16H03] Length = 701 Score = 476 bits (1224), Expect = e-132, Method: Compositional matrix adjust. Identities = 254/696 (36%), Positives = 422/696 (60%), Gaps = 24/696 (3%) Query: 61 MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120 MSE+GLD G+ +KKSAR VG+VIGK HPHGD + Y+++V +AQ F +YPL+ GQGN+G+ Sbjct: 1 MSELGLDAGSKYKKSARTVGDVIGKFHPHGDSAAYEAMVLMAQNFSFKYPLVDGQGNWGS 60 Query: 121 IDG-DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANG 179 D S AA RYTE+++T+ ++L++ + VD++ ++ EPV+FPSK P++L NG Sbjct: 61 QDDPKSFAAMRYTESKLTKFSDLLISELKSGTVDWQPNFDGSLLEPVIFPSKIPSILLNG 120 Query: 180 TSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESI 239 TSGIAVGMAT IPSHN+ E+ +A + +++NP+ I LL+ I GPDF I+ S+E + Sbjct: 121 TSGIAVGMATDIPSHNINEVIDATIYILENPKAEINDLLKIIKGPDFANKAPIIASQEEL 180 Query: 240 VESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299 E Y+ GRGGF+ +A W E+ IV+ +PYQ S+++E+IA+ ++ K+IP++ Sbjct: 181 EEIYKSGRGGFKAQAHWVKEKNN-----IVINALPYQASGSKILEQIADQMLKKKIPMVV 235 Query: 300 DIRDES--AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPL 357 D+ DE E VR+V+ K+ ++ D +M +F +D++ + +NMN++S+ P+V L Sbjct: 236 DLADEGDHKEPVRLVITLKSNRVNADDVMNHLFASTDLQKNYRVNMNLISLQGGPKVFSL 295 Query: 358 DGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM 417 ++KEWL R+ + R+ R+ ++ R+ IL+GLLI YL++D++I IIR D+PK + Sbjct: 296 VEVIKEWLTFRKNTVIRKLEHRLDQVNDRLHILEGLLIVYLDLDKVIKIIRESDEPKKDI 355 Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477 F L++ Q +AIL ++LR L KLE+ +++ E D LL E+ +I+ +LNS + I Sbjct: 356 TKAFKLSDIQANAILEIKLRQLAKLEQIKLEQERDALLEEQNEIEKILNSKTRLKTLIKK 415 Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHS 537 E+ E+K+ F G R + S K ++ + E ITVV+S GWIRS K H Sbjct: 416 ELLEIKDGF------GEDRKSPIRQSSDAKVFSEEDTLVTESITVVLSEAGWIRSAKGHE 469 Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLN 597 +D S+L ++ D L+ + + L ++GKAY+LP+ +L S RG G+ I + + Sbjct: 470 IDPSSLAYRGEDKLQDFCQGKSNQIAVFLDSNGKAYSLPSHSLPSARGMGDPITGRVSAD 529 Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657 ++ + + K +++++ G +I E S +++N + G+ F+K+ ++ ++ V+KV Sbjct: 530 SGVKFISTVIGNDIDKFMIMNTAGYGYISEFSNMVSNKKSGRAFMKLPNKAELLKVIKVR 589 Query: 658 GDHV--AVVGENRKLLIFSIDQIPEMSRGKGVRLQSY-------KDGGISDVICFKICEG 708 DHV A V +LLIF ID++P + +GKG ++ + K+ +S + Sbjct: 590 EDHVYIAAVSNIGRLLIFKIDELPVLGKGKGNKIINIPTPKFLAKEEYMSHAQLISLSSS 649 Query: 709 LTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGF 744 L I+S R DL ++ R G+++P+G+ Sbjct: 650 LR-IESGKRFLTLKLKDLQNYISSRAKRGNMLPQGY 684 >gi|239816398|ref|YP_002945308.1| DNA topoisomerase IV subunit A [Variovorax paradoxus S110] gi|239802975|gb|ACS20042.1| DNA topoisomerase (ATP-hydrolyzing) [Variovorax paradoxus S110] Length = 798 Score = 475 bits (1223), Expect = e-132, Method: Compositional matrix adjust. Identities = 261/705 (37%), Positives = 401/705 (56%), Gaps = 59/705 (8%) Query: 30 YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK-------KSARIVGEV 82 YL YALS +K RA+PD+ DG KPV RRI+++MS MGL FG A KSAR+VG+V Sbjct: 30 YLEYALSVVKGRALPDVSDGQKPVQRRILYSMSRMGLGFGGANGTVGAKPVKSARVVGDV 89 Query: 83 IGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAEL 142 +G+ HPH DQ+ YD+LVR+AQ F QRYPL GQGNFG+ DGD AAA RYTEAR+ ++ L Sbjct: 90 LGRFHPHSDQAAYDALVRMAQDFSQRYPLADGQGNFGSRDGDGAAAMRYTEARLARITSL 149 Query: 143 ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEA 202 +L +DE VDF Y+ EP + P++ P L NG SGIAVG+AT IPSHN++EI +A Sbjct: 150 LLDEIDEGTVDFIPNYDGSTEEPRLLPARLPFTLLNGASGIAVGLATEIPSHNLREIADA 209 Query: 203 ALALI-DNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEV 261 +ALI N ++S E+LL+ + GPD+P G I+ I ++YR GRG +VRARW +E++ Sbjct: 210 CVALIKSNGKLSDEELLQIVPGPDYPGGAQIISGPADIADAYRTGRGSLKVRARWKIEDL 269 Query: 262 GRGSWCIVVTEIPYQVQKSRLIEKIAEL------------------IIAKRIPLLEDIRD 303 RG W +VV E+P V +++E+I E+ + A + +L+ +RD Sbjct: 270 ARGQWQLVVNELPPGVSTQKVLEEIEEITNPKVKAGKKALSADQTQLKAAMLSVLDVVRD 329 Query: 304 ESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361 ES++D VR+V PK + D + ++ + +ET P+N+ ++ + P L +L Sbjct: 330 ESSKDAAVRLVFEPKTSRISQDEFITTLLAQTSLETSSPINLTMVGIDGKPTQKSLRQML 389 Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRF 421 EW+A R + +RS FR+ + R+ IL+G + LNIDE+IAIIR + PK +++RF Sbjct: 390 NEWIAFREVTVEKRSRFRLNKVMDRIHILEGRQLVLLNIDEVIAIIRAAEDPKAALIARF 449 Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481 +L+E Q + IL +RLR L +LE +I+ +LD L E++K++ +L S + EI Sbjct: 450 NLSEVQAEDILEIRLRQLARLEGIKIQQQLDELRTEQKKLEDILGSPAALRRLLVKEIEA 509 Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS 541 + F RRT +A+K + + + EP+TV++S +GW+R+ K + + + Sbjct: 510 DAKTFEDP-----RRTLI----QAEKRAVAEVKVVDEPVTVIVSQKGWVRAQKGWASEKA 560 Query: 542 A--------LHFKEGDSLKIALHAHTTDRILLLSTDG----KAYTLPAGNLLSGRGHGEA 589 A FK GD+L A + D +L+ + + YT+P +L RG G+ Sbjct: 561 AGNGGTAPEYSFKSGDTLYGAFECRSVDTLLVFGSAKDKSVRVYTVPVASLPGARGDGQP 620 Query: 590 IQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649 + LI+L+ + F +L+ ++ G FI +++ R GK F+ V E+ Sbjct: 621 VTTLIELDAGTHVTHFFAGPVGASVLLANTGGYGFIATVENMMSRQRGGKAFIDVGEGEQ 680 Query: 650 M---KLVVKVTG-------DHVAVVGENRKLLIFSIDQIPEMSRG 684 + LV +G HVA ++L F I ++ + +G Sbjct: 681 LCRPSLVGGASGAEPMPAATHVACASTGGRILTFDIAELKSLPKG 725 >gi|260771892|ref|ZP_05880810.1| topoisomerase IV subunit A [Vibrio metschnikovii CIP 69.14] gi|260613184|gb|EEX38385.1| topoisomerase IV subunit A [Vibrio metschnikovii CIP 69.14] Length = 704 Score = 475 bits (1222), Expect = e-131, Method: Compositional matrix adjust. Identities = 262/698 (37%), Positives = 418/698 (59%), Gaps = 23/698 (3%) Query: 61 MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120 MSE+GL A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G Sbjct: 1 MSELGLSASAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGA 60 Query: 121 IDG-DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANG 179 D S AA RYTEA++++ AE++L + + V+++ ++ EP + P++ P++L NG Sbjct: 61 PDDPKSFAAMRYTEAKLSKFAEVLLGELGQGTVEWQPNFDGTMQEPKMLPARLPHILLNG 120 Query: 180 TSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESI 239 +GIAVGMAT IP HNV+E+ EA + LI++P S+ L++Y+ GPDFPT I+ + Sbjct: 121 VTGIAVGMATDIPPHNVREVVEATIHLIEHPSASLIDLMQYVKGPDFPTEAEIISPPSDL 180 Query: 240 VESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299 + Y+ GRG ++RA W E GS IV++ +P+QV ++L+E+IA + AK++P++E Sbjct: 181 EKIYQTGRGSIKMRAVWHKE----GS-DIVISALPHQVSGAKLLEQIAGQMRAKKLPMVE 235 Query: 300 DIRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPL 357 D+RDES + RIV+ P++ +D D LM +F +D+E F +N+N++ + P+V L Sbjct: 236 DLRDESDHENPTRIVIVPRSSRVDCDTLMNHLFASTDLEKSFRVNLNMIGLNNRPEVKGL 295 Query: 358 DGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM 417 IL EW+ RRE + R +R+ + R+ IL+GLLIAYLNIDE+I IIR ED+PK ++ Sbjct: 296 TQILSEWIEFRRETVRARLQYRLDKVLARLHILQGLLIAYLNIDEVIEIIRQEDEPKGIL 355 Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477 + RF +++ Q DAIL+ +LR L KLEE +I+ E D L E+ K++ LL S ++ + Sbjct: 356 MERFGISDIQADAILDTKLRHLAKLEEVKIRGEQDALDKERAKLEELLGSERRLNTLLKK 415 Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHS 537 E++ E + RR+ E + A KA ++ ++ E ITVVIS +GW+R K H Sbjct: 416 ELKADAEKYGDD-----RRSPIVERAEA-KALTERDLMPNEMITVVISEKGWVRHAKGHE 469 Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLN 597 VD +L++K GD+ + ++ L +DG++Y+L A L S RG GE I +++ Sbjct: 470 VDCHSLNYKSGDNYLAHACGKSNQQVAFLGSDGRSYSLEAHTLPSARGQGEPITGRLNIT 529 Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVV 654 I + + LV S G F+ + S++++ R GK + + + ++ + V Sbjct: 530 EGSSIRQVIMGEDDQLWLVGSDAGYGFVCKGSDLLSKNRSGKALVNLPNNSELLAPQAVN 589 Query: 655 KVTGDHVAVVGENRKLLIFSIDQIPEMSRGKG---VRLQSYKDGGISDVIC--FKICEGL 709 + D + V ++L+F I +P++S+GKG + + S K +V+ I G Sbjct: 590 DLQHDEILAVTNQGRMLLFPIKDLPQLSKGKGNKIINIPSAKAKAREEVVSHLLAIPSGS 649 Query: 710 TWIDSAG-RSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746 + AG R DL + G+RG G+L+P+G R Sbjct: 650 SITLYAGKRKLGLKPTDLDNFRGERGRRGALLPRGLQR 687 >gi|261400975|ref|ZP_05987100.1| DNA topoisomerase IV, A subunit [Neisseria lactamica ATCC 23970] gi|269209085|gb|EEZ75540.1| DNA topoisomerase IV, A subunit [Neisseria lactamica ATCC 23970] Length = 767 Score = 474 bits (1221), Expect = e-131, Method: Compositional matrix adjust. Identities = 280/765 (36%), Positives = 424/765 (55%), Gaps = 49/765 (6%) Query: 7 SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66 ++SNTL+ R+A E YL YA+S +K RA+P++ DG KPV RRI+ AM +MGL Sbjct: 10 TDSNTLILG-------RYA-ERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGL 61 Query: 67 DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126 GA KSAR+VGE++GK HPHGD S Y+++VR+AQ F RYPLI G GNFG+ DGD A Sbjct: 62 TAGAKPVKSARVVGEILGKYHPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGA 121 Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186 AA RYTEAR+T +AEL+L +++ VDF Y+ EP+ P++ P +L NG SGIAVG Sbjct: 122 AAMRYTEARLTPIAELLLSEINQGTVDFVPNYDGAFDEPLHLPARLPMVLLNGASGIAVG 181 Query: 187 MATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLG 246 MAT IP HN+ E+ +AA+AL+ P + L++YI PDF GG I+ + + Y G Sbjct: 182 MATEIPPHNLNEVTQAAIALLKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETG 241 Query: 247 RGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAK------------- 293 +G RVRAR+ +E++ RG W ++VTE+P ++++ +I E K Sbjct: 242 KGSVRVRARYEIEKLARGQWRVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDQL 301 Query: 294 -----RIPLLEDIRDES--AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL 346 + L++ +RDES VR+V PK+ +D D + ++ + +E +N+ ++ Sbjct: 302 NTKKLMLDLIDRVRDESDGEHPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMM 361 Query: 347 SMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAI 406 + P L IL+EWL R + RR FR+ +++R+ IL+G L +L+IDE+I + Sbjct: 362 GLDNRPAQKNLKTILQEWLDFRVVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKV 421 Query: 407 IRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466 IR D PK +++ F LTE Q + IL +RLR L +LE ++++ EL+ L E+ +++ LL+ Sbjct: 422 IRESDDPKADLMAAFGLTEIQAEDILEIRLRQLARLEGFKLEKELNELREEQGRLNILLS 481 Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526 ++ I VKE+ + G R T E A +A L Q + EPIT+++S Sbjct: 482 DENEKRKLI------VKEMQADMKQYGDARRTLVE--EAGRAVLTQTTAD-EPITLILSE 532 Query: 527 RGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH 586 +GWIRS H++DLS FKEGD LK L T +++L + G+ YTL A + GRG Sbjct: 533 KGWIRSRAGHNLDLSQTTFKEGDRLKQTLEGRTVLPVVILDSLGRTYTLDAAEIPGGRGD 592 Query: 587 GEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS 646 G + LI+L + V L+ S G FI + +++ + GK + S Sbjct: 593 GVPVSSLIELQNGAKPVAMLTGLPEQHYLLSGSGGYGFIAKLGDMVGRVKAGKVVMTADS 652 Query: 647 EEKMKLVVKVTGDH--------VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGIS 698 E + + V +A +NR L F I ++ M++GKG+++ + G S Sbjct: 653 GETVLPPIAVYASSFINPDCKIIAATSQNRA-LAFPIGELKIMAKGKGLQIIGL-NAGES 710 Query: 699 DVICFKICEGLTWIDSAGRSYNRSENDLLGWL--GKRGGVGSLVP 741 E I+S GR ++ + L KRG G L+P Sbjct: 711 LTHTAVSSEPEILIESEGRRGAAHKDRIPVSLLEAKRGKKGRLLP 755 >gi|161870455|ref|YP_001599627.1| DNA topoisomerase IV subunit A [Neisseria meningitidis 053442] gi|161596008|gb|ABX73668.1| DNA topoisomerase IV subunit A [Neisseria meningitidis 053442] Length = 765 Score = 474 bits (1221), Expect = e-131, Method: Compositional matrix adjust. Identities = 279/765 (36%), Positives = 422/765 (55%), Gaps = 49/765 (6%) Query: 7 SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66 ++SNTL+ L E YL YA+S +K RA+P++ DG KPV RRI+ AM +MGL Sbjct: 8 TDSNTLM--------LGQYAERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGL 59 Query: 67 DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126 GA KSAR+VGE++GK HPHGD S Y+++VR+AQ F RYPLI G GNFG+ DGD A Sbjct: 60 TAGAKPVKSARVVGEILGKYHPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGA 119 Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186 AA RYTEAR+T +AEL+L + + VDF Y+ EP+ P++ P +L NG SGIAVG Sbjct: 120 AAMRYTEARLTPIAELLLSEIHQGTVDFVPNYDGAFDEPLHLPARLPMVLLNGASGIAVG 179 Query: 187 MATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLG 246 MAT IP HN+ E+ +AA+AL+ P + L++YI PDF GG I+ + + Y G Sbjct: 180 MATEIPPHNLNEVTQAAIALLKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETG 239 Query: 247 RGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAK------------- 293 +G RVRAR+ +E++ RG W ++VTE+P ++++ +I E K Sbjct: 240 KGSVRVRARYEIEKLARGQWRVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDQL 299 Query: 294 -----RIPLLEDIRDES--AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL 346 + L++ +RDES VR+V PK+ +D D + ++ + +E +N+ ++ Sbjct: 300 NTKKLMLDLIDRVRDESDGEHPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMM 359 Query: 347 SMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAI 406 + P L IL+EWL R + RR FR+ +++R+ IL+G L +L+IDE+I + Sbjct: 360 GLDNRPAQKNLKTILQEWLDFRTVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKV 419 Query: 407 IRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466 IR D PK +++ F LTE Q + IL +RLR L +LE ++++ EL+ L E+ +++ LL Sbjct: 420 IRESDDPKADLMAAFGLTEIQAEDILEIRLRQLARLEGFKLEKELNELREEQGRLNILLG 479 Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526 ++ I +KE+ + G R T E A +A L Q + EPIT+++S Sbjct: 480 DENEKRKLI------IKEMQADMKQYGDARRTLVE--EAGRAVLTQTTAD-EPITLILSE 530 Query: 527 RGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH 586 +GWIRS H++DLS FKEGD LK L T +++L + G+ YTL A + GRG Sbjct: 531 KGWIRSRAGHNLDLSQTAFKEGDRLKQTLEGRTVLPVVILDSLGRTYTLDAAEIPGGRGD 590 Query: 587 GEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS 646 G + LI+L + V L+ SS G FI + ++++ + GK + S Sbjct: 591 GVPVSSLIELQNGAKPVAMLTGLPEQHYLLSSSGGYGFIAKLADMVGRVKAGKVVMTTDS 650 Query: 647 EEKMKLVVKVTGDH--------VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGIS 698 E + + V +A +NR L F I ++ M++GKG+++ + G S Sbjct: 651 GETVLPPIAVYASSFINPDCKIIAATSQNRA-LAFPIGELKIMAKGKGLQIIGL-NAGES 708 Query: 699 DVICFKICEGLTWIDSAGRSYNRSENDLLGWL--GKRGGVGSLVP 741 E I+S GR ++ + L KRG G L+P Sbjct: 709 MTHTAVSSEPEILIESEGRRGAAHKDRIPISLLEAKRGKKGKLLP 753 >gi|254805369|ref|YP_003083590.1| topoisomerase IV subunit A [Neisseria meningitidis alpha14] gi|254668911|emb|CBA07100.1| topoisomerase IV subunit A [Neisseria meningitidis alpha14] Length = 765 Score = 474 bits (1221), Expect = e-131, Method: Compositional matrix adjust. Identities = 277/749 (36%), Positives = 416/749 (55%), Gaps = 42/749 (5%) Query: 23 RFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEV 82 R+A E YL YA+S +K RA+P++ DG KPV RRI+ AM +MGL GA KSAR+VGE+ Sbjct: 17 RYA-ERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGEI 75 Query: 83 IGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAEL 142 +GK HPHGD S Y+++VR+AQ F RYPLI G GNFG+ DGD AAA RYTEAR+T +AEL Sbjct: 76 LGKYHPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAEL 135 Query: 143 ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEA 202 +L + + VDF Y+ EP+ P++ P +L NG SGIAVGMAT IP HN+ E+ +A Sbjct: 136 LLSEIHQGTVDFVPNYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIPPHNLNEVTQA 195 Query: 203 ALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVG 262 A+AL+ P + L++YI PDF GG I+ S + + Y G+G RVRAR+ +E++ Sbjct: 196 AIALLKKPTLETADLMQYIPAPDFAGGGQIITSADELRRIYETGKGSVRVRARYEIEKLA 255 Query: 263 RGSWCIVVTEIPYQVQKSRLIEKIAELIIAK------------------RIPLLEDIRDE 304 RG W ++VTE+P ++++ +I E K + L++ +RDE Sbjct: 256 RGQWRVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDQLNTKKLMLDLIDRVRDE 315 Query: 305 S--AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362 S VR+V PK+ +D D + ++ + +E +N+ ++ + P L IL+ Sbjct: 316 SDGEHPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMMGLDNRPAQKNLKTILQ 375 Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422 EWL R + RR FR+ +++R+ IL+G L +L+IDE+I +IR D PK +++ F Sbjct: 376 EWLDFRVVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKVIRESDDPKADLMAAFG 435 Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482 LTE Q + IL +RLR L +LE ++++ EL+ L E+ +++ LL ++ I + Sbjct: 436 LTEIQAEDILEIRLRQLARLEGFKLEKELNELREEQGRLNILLGDENEKRKLI------I 489 Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542 KE+ + G R T E A +A L Q + EPIT+++S +GWIRS H++DLS Sbjct: 490 KEMQADMKQFGDARRTLVE--EAGRAVLTQTTAD-EPITLILSEKGWIRSRAGHNLDLSQ 546 Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602 FKEGD LK L T +++L + G+ YTL A + GRG G I LI+L + Sbjct: 547 TAFKEGDRLKQTLEGRTVLPVVILDSLGRTYTLDAAEIPGGRGDGVPISSLIELQNGAKP 606 Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-- 660 V L+ S G FI + +++ + GK + S E + V V Sbjct: 607 VAMLTGLPEQHYLLSGSGGYGFIAKLGDMVGRVKAGKVVMTADSGETVLPPVAVYASSFI 666 Query: 661 ------VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDS 714 +A +NR + F I ++ M++GKG+++ + G S E I+S Sbjct: 667 NPDCKIIAATSQNRA-IAFPIGELKIMAKGKGLQIIGL-NAGESMTHTAVSSEPEILIES 724 Query: 715 AGRSYNRSENDLLGWL--GKRGGVGSLVP 741 GR ++ + L KRG G L+P Sbjct: 725 EGRRGAAHKDRIPISLLEAKRGKKGRLLP 753 >gi|254673276|emb|CBA08348.1| topoisomerase IV subunit A [Neisseria meningitidis alpha275] Length = 1278 Score = 474 bits (1221), Expect = e-131, Method: Compositional matrix adjust. Identities = 278/755 (36%), Positives = 420/755 (55%), Gaps = 42/755 (5%) Query: 27 EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86 E YL YA+S +K RA+P++ DG KPV RRI+ AM +MGL GA KSAR+VGE++GK Sbjct: 20 ERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGEILGKY 79 Query: 87 HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQG 146 HPHGD S Y+++VR+AQ F RYPLI G GNFG+ DGD AAA RYTEAR+T +AEL+L Sbjct: 80 HPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAELLLSE 139 Query: 147 VDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALAL 206 +++ VDF Y+ EP+ P++ P +L NG SGIAVGMAT IPSHN+ E+ +AA+AL Sbjct: 140 INQGTVDFVPNYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIPSHNLNEVTQAAIAL 199 Query: 207 IDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSW 266 + P + L++YI PDF GG I+ + + Y G+G RVRAR+ +E++ RG W Sbjct: 200 LKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETGKGSVRVRARYEIEKLARGQW 259 Query: 267 CIVVTEIPYQVQKSRLIEKIAELIIAK------------------RIPLLEDIRDES--A 306 ++VTE+P ++++ +I E K + L++ +RDES Sbjct: 260 RVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDQLNTKKLMLDLIDRVRDESDGE 319 Query: 307 EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366 VR+V PK+ +D D + ++ + +E +N+ ++ + P L IL+EWL Sbjct: 320 HPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMMGLDNRPAQKNLKTILQEWLD 379 Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426 R + RR FR+ +++R+ IL+G L +L+IDE+I +IR D PK +++ F LTE Sbjct: 380 FRTVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKVIRESDDPKADLMAAFGLTEI 439 Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486 Q + IL +RLR L +LE ++++ EL+ L E+ +++ LL ++ I +KE+ Sbjct: 440 QAEDILEIRLRQLARLEGFKLEKELNELREEQGRLNILLGDENEKRKLI------IKEMQ 493 Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546 + G R T E A +A L Q + EPIT+++S +GWIRS H++DLS FK Sbjct: 494 ADMKQYGDARRTLVE--EAGRAVLTQTTAD-EPITLILSEKGWIRSRAGHNLDLSQTAFK 550 Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606 EGD LK L T +++L + G+ YTL A + GRG G + LI+L + V Sbjct: 551 EGDRLKQTLEGRTVLPVVILDSLGRTYTLDAAEIPGGRGDGVPVSSLIELQNGAKPVAML 610 Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH------ 660 L+ SS G FI + ++++ + GK + S E + + V Sbjct: 611 TGLPEQHYLLSSSGGYGFIAKLADMVGRVKAGKVVMTTDSGETVLPPIAVYASSFINPDC 670 Query: 661 --VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718 +A +NR L F I ++ M++GKG+++ + G S E I+S GR Sbjct: 671 KIIAATSQNRA-LAFPIGELKIMAKGKGLQIIGL-NAGESLTHTAVSSEPEILIESEGRR 728 Query: 719 YNRSENDLLGWL--GKRGGVGSLVPK-GFPRSGKF 750 ++ + L KRG G L+P G P + F Sbjct: 729 GAAHKDRIPVSLLEAKRGKKGKLLPHIGQPETAFF 763 >gi|171059313|ref|YP_001791662.1| DNA topoisomerase IV subunit A [Leptothrix cholodnii SP-6] gi|170776758|gb|ACB34897.1| DNA topoisomerase IV, A subunit [Leptothrix cholodnii SP-6] Length = 774 Score = 474 bits (1220), Expect = e-131, Method: Compositional matrix adjust. Identities = 263/696 (37%), Positives = 400/696 (57%), Gaps = 40/696 (5%) Query: 19 AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK----K 74 A++L E YL YALS +K RA+PD+ DG KPV RRI+++M MGL F A K Sbjct: 20 ALTLAHYAERAYLEYALSVVKGRALPDVCDGQKPVQRRILYSMQRMGLAFAGAGGAKPVK 79 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 AR+VG+V+G+ HPHGD + YD+LVR+AQ F QRYPL+ GQGNFG+ DGD AAA RYTEA Sbjct: 80 CARVVGDVLGRYHPHGDTAAYDALVRMAQDFSQRYPLVDGQGNFGSRDGDGAAAMRYTEA 139 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 R+ +A L+L +DE +DF Y+ EP + P++ P +L NG SGIAVG+AT +PSH Sbjct: 140 RLAPIARLLLDEIDEGTIDFVPNYDGSTEEPALLPARLPFVLLNGASGIAVGLATEVPSH 199 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 N++E+ A +ALI + +S E L + PD+P GG I+ S I E+YR GRG +VRA Sbjct: 200 NLREVAAAVVALIRDEHLSDEDLYALLPAPDYPGGGQIISSETDIREAYRTGRGSLKVRA 259 Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAK------------------RIP 296 RW +EE+ RG W +VVTE+P R++E+I EL K + Sbjct: 260 RWKIEELARGQWQLVVTELPPGASAQRVLEEIEELSNPKIKAGKKALSTEQVQNKALLLS 319 Query: 297 LLEDIRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQV 354 +L+ +RDES +D VR+V P++R+++ L+ + + +E P+N+ ++ P Sbjct: 320 VLDGVRDESNKDAMVRMVFEPRSRTVEQQELITILLAHTSLECSAPINLTMVGADGRPTQ 379 Query: 355 MPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK 414 L IL EW+ R+ + RR+ R+ + R+ +L+G + LNIDE+I IIR D+PK Sbjct: 380 KSLRRILVEWIGFRQATVRRRTEHRLARVLDRMHVLEGRQLVLLNIDEVIRIIRESDEPK 439 Query: 415 PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLL-NSGKQQWN 473 +++RF+L++ Q + IL +RLR L +LE +I+ EL L E+ K+D +L N G + Sbjct: 440 AALIARFALSDRQAEDILEIRLRQLARLEAIRIEQELAELRTEQGKLDDILANPGTLRRL 499 Query: 474 QIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL 533 I +EI + + G R T + A+K + + + EP+T+V+S +GW+R+ Sbjct: 500 LI-------REIEADAKAHGDARRTLIQ---AEKRAVVEVKVVDEPVTLVVSQKGWVRAR 549 Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593 H D + FK GD L T D +++L +DG+ Y++P L RG G I L Sbjct: 550 TGHGHDPAGFAFKAGDGLYGTFECRTVDALVVLGSDGRVYSVPVNTLPGARGDGVPITSL 609 Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653 I+L I+ ++ LL+ S G + + ++I+ + GK FL + E+ Sbjct: 610 IELEAGSQILHYIAGSASTPLLLAHSGGTGLLAQIGDLISRQKGGKAFLTLEPSERCLPP 669 Query: 654 VKVTGDH--VAVVGENRKLLIFSIDQI---PEMSRG 684 + V +H VA + + +LL+F +D++ P RG Sbjct: 670 LPVALEHRQVACLSSSGRLLVFGLDELKRQPNGGRG 705 >gi|239998315|ref|ZP_04718239.1| DNA topoisomerase IV subunit A [Neisseria gonorrhoeae 35/02] gi|268594175|ref|ZP_06128342.1| DNA topoisomerase IV subunit A [Neisseria gonorrhoeae 35/02] gi|268547564|gb|EEZ42982.1| DNA topoisomerase IV subunit A [Neisseria gonorrhoeae 35/02] Length = 768 Score = 473 bits (1218), Expect = e-131, Method: Compositional matrix adjust. Identities = 277/750 (36%), Positives = 418/750 (55%), Gaps = 43/750 (5%) Query: 23 RFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEV 82 R+A E YL YA+S +K RA+P++ DG KPV RRI+ AM +MGL GA KSAR+VGE+ Sbjct: 19 RYA-ERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGEI 77 Query: 83 IGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAEL 142 +GK HPHGD S Y+++VR+AQ F RYPLI G GNFG+ DGD AAA RYTEAR+T +AEL Sbjct: 78 LGKYHPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAEL 137 Query: 143 ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEA 202 +L +++ VDF Y+ EP+ P++ P +L NG SGIAVGMAT IPSHN+ E+ +A Sbjct: 138 LLSEINQGTVDFMPNYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIPSHNLNEVTQA 197 Query: 203 ALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVG 262 A+AL+ P + L++YI PDF GG I+ + + Y G+G RVRAR+ +E++ Sbjct: 198 AIALLKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETGKGSVRVRARYEIEKLA 257 Query: 263 RGSW-CIVVTEIPYQVQKSRLIEKIAELIIAK------------------RIPLLEDIRD 303 RG W ++VTE+P ++++ +I E K + L++ +RD Sbjct: 258 RGQWRRVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDRLNTKKLMLDLIDRVRD 317 Query: 304 ES--AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361 ES VR+V PK+ +D D + ++ + +E +N+ ++ + P L IL Sbjct: 318 ESDGEHPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMMGLDNRPAQKNLKTIL 377 Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRF 421 +EWL R + RR FR+ +++R+ IL+G L +L+IDE+I +IR D PK +++ F Sbjct: 378 QEWLDFRIVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKVIRESDDPKADLMAAF 437 Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481 LTE Q + IL +RLR L +LE ++++ EL+ L E+ +++ LL ++ I Sbjct: 438 GLTEIQAEDILEIRLRQLARLEGFKLEKELNELREEQGRLNILLGDENEKRKLI------ 491 Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS 541 +KE+ + G R T E A +A L Q + EPIT+++S +GWIRS H++DLS Sbjct: 492 IKEMQADMKQFGDARRTLVE--EAGRAVLTQTAAD-EPITLILSEKGWIRSRAGHNLDLS 548 Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD 601 FKEGD LK L T +++L + G+ Y++ A + GRG G + LI+L + Sbjct: 549 QTAFKEGDRLKQTLEGRTVLPVVILDSSGRTYSIDAAEIPGGRGDGVPVSSLIELQNGAK 608 Query: 602 IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH- 660 V L+ SS G FI + +++ + GK + S E + V V Sbjct: 609 PVAMLTGLPEQHYLLSSSGGYGFIAKLGDMVGRVKAGKVVMTADSGETVLPPVAVYASSF 668 Query: 661 -------VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWID 713 +A +NR L F I ++ M++GKG+++ + G S E I+ Sbjct: 669 INPDCKIIAATSQNRA-LAFPIGELKIMAKGKGLQIIGL-NAGESMTHTAVSSEPEILIE 726 Query: 714 SAGRSYNRSENDLLGWL--GKRGGVGSLVP 741 S GR ++ L L KRG G L+P Sbjct: 727 SEGRRGAAHKDRLPVALIEAKRGKKGRLLP 756 >gi|329119989|ref|ZP_08248661.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Neisseria bacilliformis ATCC BAA-1200] gi|327463902|gb|EGF10216.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Neisseria bacilliformis ATCC BAA-1200] Length = 798 Score = 473 bits (1218), Expect = e-131, Method: Compositional matrix adjust. Identities = 260/713 (36%), Positives = 402/713 (56%), Gaps = 37/713 (5%) Query: 9 SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68 + +++ EN + ++A E YL YA+S +K RA+P++ DG KPV RRI++AM +MGL Sbjct: 36 TPSVLSENDTLILGQYA-ERAYLEYAMSVVKGRALPEVSDGQKPVQRRILYAMRDMGLTA 94 Query: 69 GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128 GA KSAR+VGE++GK HPHGD S Y+++VR+AQ F RYPLI G GNFG+ DGD AAA Sbjct: 95 GAKPVKSARVVGEILGKYHPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAA 154 Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188 RYTEAR+T +AEL+L + + VDF Y+ EP + P++ P +L NG SGIAVGMA Sbjct: 155 MRYTEARLTPIAELLLSEIHQGTVDFVPNYDGAFEEPAMLPARLPMVLLNGASGIAVGMA 214 Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248 T IP HN+ E+ +AA+AL+ P + L+E+I PDF GG I+ + + Y G+G Sbjct: 215 TEIPPHNLGEVTQAAIALLKKPHLETADLMEFIPAPDFAGGGQIITPAADLRQIYETGKG 274 Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAK--------------- 293 RVRAR+ +E + RG W ++VTE+P ++++ +I E K Sbjct: 275 SVRVRARYEIERLARGQWRVIVTELPPNTNAAKILAEIEEQTNPKPKAGKKQLNQDQLNT 334 Query: 294 ---RIPLLEDIRDES--AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSM 348 + L++ +RDES VR+V PK+ D D + ++ + +E +N+ ++ + Sbjct: 335 KKLMLDLIDRVRDESDGEHPVRLVFEPKSSRTDTDAFINTLMAQTSLEGNVLMNLVMMGL 394 Query: 349 GRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR 408 P L IL+EWL R + RR FR+ +++R+ IL+G L +L+IDE+I +IR Sbjct: 395 DNRPAQKNLKTILQEWLDFRVVTVTRRLKFRLSQVEKRLHILEGRLKVFLHIDEVIKVIR 454 Query: 409 NEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSG 468 D PK +++ F LTE Q + IL +RLR L +LE ++++ EL+ L E+ +++ LL Sbjct: 455 ESDDPKTDLMAAFGLTEIQAEDILEIRLRQLARLEGFKLEKELNELREEQGRLNILLGDE 514 Query: 469 KQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRG 528 ++ I +KE+ + G R T E A +A L Q + EP+T+++S +G Sbjct: 515 NEKKKLI------IKEMQADMKQYGDERRTLVE--EAGRAVLTQTTAD-EPVTLILSEKG 565 Query: 529 WIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE 588 WIRS H++DLS FKEGD LK L T +++L T G+ YTL A + GRG G Sbjct: 566 WIRSRAGHNLDLSQTAFKEGDRLKQTLEGRTVQPVIILDTLGRTYTLDAAEIPGGRGDGV 625 Query: 589 AIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE 648 + LI+L + L+ S G FI + +++++ + GK + + + E Sbjct: 626 PVSSLIELQNGAKPAAMLTGVPEQHYLLAGSGGYGFIAKLADMVSRNKNGKVLMTLDAGE 685 Query: 649 KMKLVVKVTGD-------HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKD 694 + V V V + +LL F + ++ M +G+G++L D Sbjct: 686 TVLPPVPVYASSLINPDCKVVLADSGNRLLAFPLGELKVMPKGRGLQLTPLSD 738 >gi|254448121|ref|ZP_05061584.1| DNA topoisomerase IV, A subunit [gamma proteobacterium HTCC5015] gi|198262247|gb|EDY86529.1| DNA topoisomerase IV, A subunit [gamma proteobacterium HTCC5015] Length = 750 Score = 473 bits (1217), Expect = e-131, Method: Compositional matrix adjust. Identities = 247/670 (36%), Positives = 405/670 (60%), Gaps = 19/670 (2%) Query: 27 EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86 E+ YL Y++ I +RA+P + DG KPV RRII+AMSE+GL + KK+AR VG+V+GK Sbjct: 18 EKAYLDYSMYVILDRALPHIGDGMKPVQRRIIYAMSELGLSASSKHKKAARTVGDVLGKY 77 Query: 87 HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQVAELILQ 145 HPHGD + Y+++V +AQPF RYPL+ GQGN+G+ D S AA RYTEA++ + L+L Sbjct: 78 HPHGDSACYEAMVLMAQPFTYRYPLVDGQGNWGSPDDPKSFAAMRYTEAKLRPYSRLMLH 137 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 + + VD++ ++ +EPVV P++ PN+L NGT+GIAVGMAT IP HN++E+ A +A Sbjct: 138 ELGQGTVDWQPNFDGTMNEPVVLPARVPNVLLNGTTGIAVGMATDIPPHNLREVASACIA 197 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265 L+DN +S+E+L+ YI PD+PT +V + I + Y G G R+RA++ VEE Sbjct: 198 LLDNSRLSVEELMAYIPAPDYPTDAEVVTPKSDIQKMYETGNGSIRMRAKYTVEEGD--- 254 Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFPKNRSLDPD 323 +V+T +P+Q ++++E+IA+ + K++P+++D+RDES + +R V+ P++ ++ D Sbjct: 255 --VVITALPHQTYGAKVMEQIAQQMRDKKLPMVDDLRDESDHENPIRFVISPRSNRVNID 312 Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383 LM +F +D+E + +NMNV+ + P+V L IL EWL R + + RR +R+ + Sbjct: 313 ELMSHLFATTDLERNYRVNMNVIGLDGRPRVRNLREILVEWLKFRIQTVTRRLQWRLDKV 372 Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLE 443 ++R+ IL+GLL+AYLN+DE+I IIR ED+PK V++ F L++ Q +AIL +LR L KLE Sbjct: 373 EKRLHILEGLLVAYLNLDEVIRIIRTEDEPKAVLMKAFKLSDEQAEAILETKLRHLAKLE 432 Query: 444 EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG-RRRTTFCEV 502 E +I+ E ++L E++ + L S ++ I KE+ + + D G RR+ E Sbjct: 433 EMKIRGEQEDLERERDDLQKTLGSKQRLKTLIK------KELKADAQDYGDDRRSPLVER 486 Query: 503 SRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDR 562 A + + A++ EP T+VIS +GW+R+ K H + L++K GD + T + Sbjct: 487 EAAQQMD-ETALVPSEPTTIVISEKGWVRAGKGHDLKPEELNYKAGDGYQHHALGRTNQQ 545 Query: 563 ILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGN 622 + + ++G+ YTL A + S R GE + + + + V L+ + G Sbjct: 546 AVFIDSNGRTYTLVAHSFPSARSFGEPLTGKLKVKDGAEFVGVMAGKPQDLYLLATDAGY 605 Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---DHVAVVGENRKLLIFSIDQIP 679 ++ + +++ + GK L V K+ V V D + V E + +D++P Sbjct: 606 GYVAKLEDMMTRNKAGKAMLSVPKGAKVLPPVPVRSYEQDWLVGVTEQGYCGVIKLDELP 665 Query: 680 EMSRGKGVRL 689 ++ +GKGV++ Sbjct: 666 QLPKGKGVKM 675 >gi|319941585|ref|ZP_08015911.1| DNA topoisomerase IV [Sutterella wadsworthensis 3_1_45B] gi|319804955|gb|EFW01797.1| DNA topoisomerase IV [Sutterella wadsworthensis 3_1_45B] Length = 902 Score = 473 bits (1217), Expect = e-131, Method: Compositional matrix adjust. Identities = 264/710 (37%), Positives = 403/710 (56%), Gaps = 37/710 (5%) Query: 13 VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72 EE+ R+A + YL YA+S +K RA+P++ DG KPV RRI+ M MGL F Sbjct: 102 AEEDGALTLARYA-SQAYLEYAMSVVKSRALPEVTDGQKPVQRRILIDMYRMGLKFEGRS 160 Query: 73 KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132 KSARIVG+V+GK HPHGDQSVYD+LVR+AQ F RYPL+ +GNFG+ DGDSAAA RYT Sbjct: 161 VKSARIVGDVLGKYHPHGDQSVYDALVRMAQTFSLRYPLLVAEGNFGSRDGDSAAAMRYT 220 Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192 E R+T +++L+L+ VD +VDF+ Y+ EPV P+K P +L NG+SGIAVGMAT IP Sbjct: 221 ETRLTPISQLLLEEVDLGSVDFQPNYDGNFQEPVELPAKLPFVLLNGSSGIAVGMATEIP 280 Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252 HN+ E+ A + L++NP+ + ++LE + PDFP GG I+ ++ I YR GRG RV Sbjct: 281 PHNLGEVAAACVRLLENPDADLNEILELMPAPDFPCGGQIITPKDEIRAIYRSGRGKLRV 340 Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAEL-----------IIAKR------- 294 RARW E++ RG W +V+ E+P ++++I ++ + AK+ Sbjct: 341 RARWHFEDLARGQWQLVIDELPPAASARSILDRIEQISNPRPKKDKKTLSAKQQQAKSAM 400 Query: 295 IPLLEDIRDESAE--DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVP 352 + LL+++RDES + DVR+V PK +D D + + +D+E+ P+N+ +L + P Sbjct: 401 LSLLDNVRDESGKSVDVRLVFEPKTSKVDRDEFVNYLLSETDLESNVPVNLVMLGLDGKP 460 Query: 353 QVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK 412 + L IL++W+A R V+ RRS R++ + R+ +L+G + LNID +IAIIRN D Sbjct: 461 RQKGLLEILQDWIAFRLAVVRRRSEARLEKVLDRIHVLEGRSLVLLNIDRVIAIIRNADD 520 Query: 413 PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQW 472 PK ++ F LT+ Q D IL +RL+ L +L I+ EL L E+ ++ +L S Sbjct: 521 PKADLIKEFGLTDRQADDILEIRLKQLARLAAIAIEKELAQLAKERAGLEKILGSDGALK 580 Query: 473 NQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS 532 Q A EI + F+ RRT E +A + EP+TVVIS +G++R+ Sbjct: 581 RQTAKEIEAAAKSFADP-----RRTVVEEAEQA----AHEVQTADEPVTVVISRKGFLRA 631 Query: 533 LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL 592 H D S + FK GD L+ + ++ +I L G+ YTL L GRG G + Sbjct: 632 RTGHGHDCSLMSFKTGDGLEATIECRSSSQISFLDQAGRVYTLAVSALPGGRGDGSPLSA 691 Query: 593 LIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM-- 650 +DL D ++V+S G +++ S++ + G+ F+ + E + Sbjct: 692 FVDLPKGAQPAGWISADPNAAAVIVTSGGKGMVLKASDVSTRLKAGRDFVTLGEGESLLP 751 Query: 651 --KLVVKVT-GDH-VAVVGENRKLLIFSIDQIP-EMSRGKGVRLQSYKDG 695 +L +K G+ +A + + +LL+F + ++ S GKG+ + + G Sbjct: 752 PIELPLKAAQGEQLIACLSSSNRLLVFPLKEVRVTASGGKGMSFMTLETG 801 >gi|332527919|ref|ZP_08403953.1| DNA topoisomerase IV subunit A [Rubrivivax benzoatilyticus JA2] gi|332112493|gb|EGJ12286.1| DNA topoisomerase IV subunit A [Rubrivivax benzoatilyticus JA2] Length = 771 Score = 472 bits (1214), Expect = e-130, Method: Compositional matrix adjust. Identities = 258/696 (37%), Positives = 397/696 (57%), Gaps = 35/696 (5%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF----GA 70 E A++L E YL YALS +K RA+PD+ DG KPV RRI++AM MGL + GA Sbjct: 11 EPADALTLADYAERAYLEYALSVVKGRALPDVCDGQKPVQRRILYAMHRMGLGYNGNVGA 70 Query: 71 AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130 KSAR+VG+V+G+ HPHGD + YD++VR+AQ F QRYPL+ GQGNFG+ DGD AAA R Sbjct: 71 KPVKSARVVGDVLGRYHPHGDTAAYDAMVRMAQDFSQRYPLVDGQGNFGSRDGDGAAAMR 130 Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190 YTEAR+ +A L+L +DE VDF+ Y+ EP P++ P +L NG SGIAVG+AT Sbjct: 131 YTEARLAPIARLLLDEIDEGTVDFQPNYDGSTQEPRQLPARLPFVLLNGASGIAVGLATE 190 Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250 IPSHN++E+ AA+ LI +P ++ + L + GPDFP GG I+ S I +Y GRG Sbjct: 191 IPSHNLREVAAAAVELIRDPALADDALYTLLPGPDFPGGGQIISSAAEIRAAYASGRGSL 250 Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP-------------- 296 +VRARW +E++ RG W +VV E+P R++E+I EL K P Sbjct: 251 KVRARWTIEDLARGQWQLVVNELPPGTSAQRVLEEIEELTNPKLRPGKKALTQEQQQLKQ 310 Query: 297 ----LLEDIRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGR 350 +L+ +RDES++D VR+V PK+R++ L+ ++ + +E P+N+ ++ Sbjct: 311 TVLAVLDAVRDESSKDAPVRLVFEPKSRTVSQQDLITTLLANTSLECNSPVNLTMVGADG 370 Query: 351 VPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE 410 P L +L+EW+ R++ + RR+ R+ + R+ +L+G + LNIDE+I IIR Sbjct: 371 RPTQKSLRQMLEEWIGFRQQTVQRRTRHRLDKVLERIHVLEGRQLVLLNIDEVIRIIRES 430 Query: 411 DKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQ 470 D+P+ +++RF+L+E Q D IL+LRLR L +LE +I+ EL L + +++ +L S Sbjct: 431 DEPRAALIARFNLSERQADDILDLRLRQLARLEAIKIEQELKELRETQARLEEILASPAV 490 Query: 471 QWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI 530 + ++EI + + G R T + R A ++ TVV+S +GW+ Sbjct: 491 LKRTL------IREIEADAKACGDERRTLIQEERRAVAEIRVVDEPV---TVVVSQKGWV 541 Query: 531 RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAI 590 R+LK H V+ S L FK GD+L + D +L+ G+ Y++ +L GRG G I Sbjct: 542 RALKGHEVERSTLGFKAGDALYATFACRSVDTLLVFGDRGRVYSVAVSSLPGGRGDGVPI 601 Query: 591 QLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM 650 LI+L I + + LL+ +S G + + ++ R GK+FL + + E+ Sbjct: 602 TTLIELEAGTAIAHYWAGAADTTLLLANSGGFGLLAKAGDLHGRQRAGKSFLTLEAGERP 661 Query: 651 --KLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRG 684 V + A + + +LL++ +D++ G Sbjct: 662 LEPWAVAAGQTNAACLAADGRLLVYPLDELKHQPNG 697 >gi|260223056|emb|CBA33237.1| DNA topoisomerase 4 subunit A [Curvibacter putative symbiont of Hydra magnipapillata] Length = 812 Score = 471 bits (1213), Expect = e-130, Method: Compositional matrix adjust. Identities = 273/711 (38%), Positives = 404/711 (56%), Gaps = 65/711 (9%) Query: 30 YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK-------KSARIVGEV 82 YL YALS +K RA+PD+ DG KPV RRI+++M MGL FG A KSAR+VG+V Sbjct: 38 YLEYALSVVKGRALPDVCDGLKPVQRRILYSMGRMGLGFGGANGNAGAKPVKSARVVGDV 97 Query: 83 IGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAEL 142 +G+ HPHGDQS YD+LVR+AQ F QRYPL+ GQGNFG+ DGD AAA RYTEAR+ ++ L Sbjct: 98 LGRFHPHGDQSAYDALVRMAQDFSQRYPLVDGQGNFGSRDGDGAAAMRYTEARLAKITTL 157 Query: 143 ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEA 202 +L +D+ VDF+ Y+ EP P++ P L NG SGIAVG+AT IPSHN++E+ +A Sbjct: 158 LLDEIDQGTVDFQPNYDGSTEEPKQLPARLPFSLLNGASGIAVGLATEIPSHNLREVADA 217 Query: 203 ALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVG 262 +ALI N ++S ++L I GPDFP GG I+ S I ++YR GRG +VRARW +E++ Sbjct: 218 CVALIKNDKLSDDELFTLIPGPDFPGGGQIISSASDIADAYRSGRGSLKVRARWKIEDLA 277 Query: 263 RGSWCIVVTEIPYQVQKSRLIEKIAEL------------------IIAKRIPLLEDIRDE 304 RG W +VVTE+P V R++E+I EL + A + +L+ +RDE Sbjct: 278 RGQWQLVVTELPPGVSSQRVLEEIEELTNPKVKAGKKALSQEQTQLKASILSVLDVVRDE 337 Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362 S +D VR+V PK+R+++ L+ ++ + +ET P+N+ ++ + P L +L Sbjct: 338 SNKDALVRLVFEPKSRTVEQQELITALLAHTSLETSSPINLTMVGLDGKPVQKSLRQMLV 397 Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422 EW+A R + RRS R+ + R+ IL+G LNIDE+IAIIRN D+PK +++RF+ Sbjct: 398 EWVAFRASTIERRSRHRLGKVLDRIHILEGRQTVLLNIDEVIAIIRNSDEPKAALIARFN 457 Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482 L++ Q + IL +RLR L +LE +I+ EL L E+ K++ +L S + EI Sbjct: 458 LSDRQAEDILEIRLRQLARLEAIKIEQELSELRTEQGKLEEILGSPAALRRLMVKEIEAD 517 Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542 ++F+ + RRT +A+K + + + EP+TVV+S +GW+R+ H + S Sbjct: 518 AKVFADA-----RRTLI----QAEKKAVAEVKVVDEPVTVVVSEKGWVRARTGHGHEAST 568 Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602 FK GD L T D +L+ ++G+ YT+P L GRG G+ + L++L I Sbjct: 569 FAFKAGDGLYGTFECRTVDTLLVFGSNGRIYTVPVSALPGGRGDGQPVTTLLELEGGTQI 628 Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG---- 658 + F S+ +LL+ SS G FI + + + GK F+ V E V+G Sbjct: 629 LYYFAGPSSAQLLLSSSGGYGFIASVENMTSRQKAGKAFVGVGEGETPCAPSVVSGAQGK 688 Query: 659 -------------------------DHVAVVGENRKLLIFSIDQIPEMSRG 684 HVA ++L F I ++ M+ G Sbjct: 689 VTFAGKEGSTAPGAAGAQATLLAPATHVACASTGGRILTFEITELKTMANG 739 >gi|89901417|ref|YP_523888.1| DNA topoisomerase IV subunit A [Rhodoferax ferrireducens T118] gi|89346154|gb|ABD70357.1| DNA topoisomerase IV subunit A [Rhodoferax ferrireducens T118] Length = 796 Score = 471 bits (1213), Expect = e-130, Method: Compositional matrix adjust. Identities = 269/710 (37%), Positives = 403/710 (56%), Gaps = 54/710 (7%) Query: 30 YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG-------AAFKKSARIVGEV 82 YL YALS +K RA+PD+ DG KPV RRI+++MS MGL FG A KSARIVG+V Sbjct: 34 YLEYALSVVKGRALPDVCDGQKPVQRRILYSMSRMGLGFGGPNGNTGAKPVKSARIVGDV 93 Query: 83 IGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAEL 142 +G+ HPHGD SVYD+ VR+AQ F QRYPLI G GNFG+ DGD AAA RYTEAR+ ++ L Sbjct: 94 LGRFHPHGDSSVYDAAVRMAQDFSQRYPLIDGHGNFGSRDGDGAAAMRYTEARLAKITGL 153 Query: 143 ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEA 202 +L +DE VDF Y+ EP P++ P L NG SGIAVG+AT IPSHN++E+ +A Sbjct: 154 LLDEIDEGTVDFMPNYDGSTQEPSQLPARLPFNLLNGASGIAVGLATEIPSHNLREVADA 213 Query: 203 ALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVG 262 +ALI +P++S L I GPD+P GG I+ S E I E+YR GRG + RARW +E++ Sbjct: 214 CIALIKSPQLSESDLFALIPGPDYPGGGQIISSAEDIAEAYRSGRGSLKCRARWKIEDLA 273 Query: 263 RGSWCIVVTEIPYQVQKSRLIEKIAEL------------------IIAKRIPLLEDIRDE 304 RG W +V+TE+P V R++E+I EL + A + +L+ +RDE Sbjct: 274 RGQWRLVLTELPPGVSTQRVLEEIEELSNPKVKAGKKALSLEQNQLKATLLSVLDGVRDE 333 Query: 305 SAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362 S++D VR+V PK + L+ ++ + +ET P+N+ ++ + P L +L Sbjct: 334 SSKDAAVRLVCEPKTSRISQQELITTLLAHTSLETSSPINLTMIGLDGRPTQKSLRQMLT 393 Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422 EW+A R++ + RRS R+ + R+ IL+G + LNIDE+IAIIR D+PK +++RF Sbjct: 394 EWIAFRQKTIERRSQHRLGKVLDRIHILEGRALVLLNIDEVIAIIRQADEPKAALIARFH 453 Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482 L++ Q + IL +RLR L +LE +I+ EL L E++K++ +L S A + Sbjct: 454 LSDRQAEDILEIRLRQLARLEAIKIEQELAGLRGEQQKLEEILGSPS------ALRRLMI 507 Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542 KEI + + R T + A+K + + + EP+TVV+S +GW+R+ K + + +A Sbjct: 508 KEIEADAKTFADPRRTLIQ---AEKKAVLEVKVVDEPVTVVVSQKGWVRAQKGWASERAA 564 Query: 543 -------LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLID 595 FK GD+L T D +L ++G+ Y++ L RG G+ + L++ Sbjct: 565 NGVLPAEYSFKAGDALYDTFECRTVDTLLAFGSNGRVYSVAVALLPGARGDGQPMTSLLE 624 Query: 596 LNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655 L ++ F + LL+ SS G F+ + + + GK F+ ++ E + Sbjct: 625 LEAGTQLLYYFAGPAPATLLLSSSGGYGFLASVENMTSRLKAGKAFVTCNAGEILCRPSP 684 Query: 656 VTG----------DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKD 694 V G HVA ++L F I Q+ M+ G+G+ L +D Sbjct: 685 VAGGSGATPWPAATHVACASAGGRILTFEISQLKTMATGGRGLMLIDLED 734 >gi|221632669|ref|YP_002521890.1| DNA gyrase subunit A [Thermomicrobium roseum DSM 5159] gi|221155840|gb|ACM04967.1| DNA gyrase, A subunit [Thermomicrobium roseum DSM 5159] Length = 836 Score = 470 bits (1210), Expect = e-130, Method: Compositional matrix adjust. Identities = 289/757 (38%), Positives = 439/757 (57%), Gaps = 32/757 (4%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 V+ +S+ ++ YL YA+S I +RA+PD+RDG KPV RRI++ M EMGL A ++KSA Sbjct: 14 VRVISIEEEMKRSYLDYAMSVIVQRALPDVRDGLKPVQRRILYGMYEMGLRPNAKYRKSA 73 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 IVGEV+ HPHGD +VYD+LVR+ QPF RYPLI GQGNFG++DGDSAAA RYTEAR+ Sbjct: 74 GIVGEVLKSYHPHGDSAVYDALVRMVQPFTMRYPLIDGQGNFGSVDGDSAAAMRYTEARL 133 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 +AE +L +D+ VDF Y++ EP V P++ PNLL NG SGIAVGMAT+IP HN+ Sbjct: 134 APIAEELLADIDKQTVDFVPNYDDSTREPSVLPARLPNLLVNGASGIAVGMATNIPPHNL 193 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ +A + LIDNPE ++E+L+E + GPDFPTGGII+ RE I+ +Y GRG VRAR Sbjct: 194 GEVVDALVYLIDNPEATVEELVERLPGPDFPTGGIIL-GREGILAAYATGRGRIVVRARA 252 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316 +EE GRG I+VTE+PYQV K+ LIE+IAEL+ + R+ + D+RDES D ++ Sbjct: 253 HIEETGRGRTSIIVTELPYQVNKAALIERIAELVKSGRLEGIHDLRDESDRDGMRIVIEL 312 Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376 R P ++ ++F + ++T F +NM L G +P+V+ L +L+ +L HR++V+ RR+ Sbjct: 313 KRDAQPKTVLNNLFKHTQLQTTFGVNMLALVDGVLPRVLTLKRLLQLYLEHRQQVIRRRT 372 Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN----EDKPKPVMVSRFSLTENQVDAIL 432 F ++ +RR +L+GL IA ++DE+I+ IRN ED + +M +RF+LTE Q +AIL Sbjct: 373 EFDLRQAERRAHVLEGLKIALDHLDEVISTIRNARSAEDARQQLM-ARFNLTEIQANAIL 431 Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492 +++LR L LE +I+ E LLA ++ +LL + + E+ E+KE + Sbjct: 432 DMQLRRLAALERQKIEDEYRELLARIAELRALLADAAKILAVVRKELLELKERYGDP--- 488 Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI-RSLKSH-------SVDLSALH 544 RRT E S + ++ + + V +++RG++ RS H ++ + Sbjct: 489 --RRTQIQEAS---SEISDEDLVPRVDVIVTLTSRGYVKRSTNGHFRVQHRGGRGVNGMA 543 Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS-GR-GHGEAIQLLIDLNHNQDI 602 ++ DS++ + A T D +L + G+ + LP L GR G I ++L +++ Sbjct: 544 VRDEDSIQHIVLASTHDSLLFFTNRGRVFQLPTYELPDVGRNARGLPIVNFLNLQPGEEV 603 Query: 603 VTAF-VYD-STCKLLVVSSKGNAFIVEESEIIANTR-KGKTFLKVSSEEKMKLVVKVTG- 658 T V D ST L ++ E +N R G + + + +++ V +G Sbjct: 604 TTLLPVRDFSTATFLFFCTRQGRVKRVRLEEFSNVRASGLIAMSLDAGDELAWVRPTSGS 663 Query: 659 DHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKIC--EGLTWIDSAG 716 D V +V + + + F D + M R G + D G + VI ++ EG + S Sbjct: 664 DEVILVTAHGQAIRFPEDDVRPMGRQAGGVIGVRLDEGDA-VIAAEVVRPEGDLLLVSQY 722 Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753 R+ D G RGG G + K PR+G ++ Sbjct: 723 GYGKRTSLDEFRTQG-RGGSGVIAMKVTPRTGHVAAA 758 >gi|325265708|ref|ZP_08132397.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Kingella denitrificans ATCC 33394] gi|324982839|gb|EGC18462.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Kingella denitrificans ATCC 33394] Length = 761 Score = 469 bits (1206), Expect = e-129, Method: Compositional matrix adjust. Identities = 254/696 (36%), Positives = 410/696 (58%), Gaps = 36/696 (5%) Query: 27 EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86 E YL YA+S +K RA+P ++DG KPV RRI++AM +MGL KSAR+VGE++GK Sbjct: 15 ERAYLEYAMSVVKGRALPAVQDGQKPVQRRILYAMKDMGLVHNGKPVKSARVVGEILGKY 74 Query: 87 HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQG 146 HPHGD S Y+++VR+AQ F RYPLI G GNFG+ DGD AAA RYTEAR++ +A+L+L Sbjct: 75 HPHGDSSAYEAMVRMAQNFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLSPIADLLLSE 134 Query: 147 VDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALAL 206 + + VDF Y+ + EPV+ P++ P +L NG SGIAVGMAT IPSHN+ EI +AA+AL Sbjct: 135 IQQGTVDFVPNYDGAEKEPVLLPARLPMVLLNGASGIAVGMATEIPSHNLTEITQAAIAL 194 Query: 207 IDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSW 266 + NP ++ L+ Y+ PDF GG I+ + + + Y G+G RVRAR+ ++++ RG W Sbjct: 195 LKNPNLNTADLMAYVPAPDFAGGGHIITPAKDVRQIYETGKGSLRVRARYEIDKMARGQW 254 Query: 267 CIVVTEIPYQVQKSRLIEKIAELIIAK------------------RIPLLEDIRDES--A 306 ++V+E+P ++++ +I E K + L+E +RD+S Sbjct: 255 RVIVSELPPNTSSAKILAEIEEQTNPKPKAGKKQLSQDQINTKKLMLDLIEKVRDDSDGE 314 Query: 307 EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366 VR++ PK+ ++P + ++ + +E +N+ ++ P L IL+EWL Sbjct: 315 HPVRLIFEPKSSRIEPQHFVNTLMAQTGLEGNVSVNLVMMGADNRPAQKNLKTILQEWLD 374 Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTEN 426 +R + RR R+ A++RR+ IL G LIA+L+IDE+I +IR D+PK +++ FSL+E Sbjct: 375 YRVATVTRRLQHRLNAVERRIHILDGRLIAFLHIDEVIRVIREADEPKADLMANFSLSEI 434 Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486 Q + IL +RLR L +LE ++++EL+ L E+ + +LL + I +KE+ Sbjct: 435 QAEDILEIRLRQLARLEGIKLENELNELREEQSSLHTLLGDENAKKKHI------IKEMQ 488 Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546 + + G R T E A++ATL Q + EP+T+++S +GWIR+ H VD++ FK Sbjct: 489 ADAKQFGDARRTLVEA--AERATLTQTTAD-EPVTLILSQKGWIRARSGHDVDIAQTVFK 545 Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606 EGD L+ L A T +++L G++YT+ ++ GRG G + LID+ N IV+ Sbjct: 546 EGDGLQQILPARTVQPVIVLDDSGRSYTINPADIPKGRGDGVPLASLIDMPANAQIVSML 605 Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK------MKLVVKVTGD- 659 + L+ +S G FI + + + + GKT + + + E + L + D Sbjct: 606 TGEPEDHYLLANSGGYGFICKLEHLHSRLKAGKTVMTLDNGETVLPPVCVHLSSLINPDC 665 Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDG 695 + + + +LL F + ++ M++G+G+++ S ++G Sbjct: 666 KIMLATAHNRLLAFPLGEMKIMAKGRGLQMISLQEG 701 >gi|319792864|ref|YP_004154504.1| DNA topoisomerase (ATP-hydrolyzing) [Variovorax paradoxus EPS] gi|315595327|gb|ADU36393.1| DNA topoisomerase (ATP-hydrolyzing) [Variovorax paradoxus EPS] Length = 797 Score = 468 bits (1205), Expect = e-129, Method: Compositional matrix adjust. Identities = 258/705 (36%), Positives = 398/705 (56%), Gaps = 59/705 (8%) Query: 30 YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG-------AAFKKSARIVGEV 82 YL YALS +K RA+PD+ DG KPV RRI+++MS MGL FG A KSAR+VG+V Sbjct: 29 YLEYALSVVKGRALPDVSDGQKPVQRRILYSMSRMGLGFGGTNGTVGAKPVKSARVVGDV 88 Query: 83 IGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAEL 142 +G+ HPH DQ+ YD+LVR+AQ F QRYPL+ GQGNFG+ DGD AAA RYTEAR+ ++ L Sbjct: 89 LGRFHPHSDQAAYDALVRMAQDFSQRYPLVDGQGNFGSRDGDGAAAMRYTEARLARITSL 148 Query: 143 ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEA 202 +L +DE VDF Y+ EP + P++ P L NG SGIAVG+AT IPSHN++EI +A Sbjct: 149 LLDEIDEGTVDFIPNYDGSTEEPRLLPARLPFTLLNGASGIAVGLATEIPSHNLREIADA 208 Query: 203 ALALI-DNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEV 261 +ALI N ++S E+L + GPD+P G I+ I ++YR GRG +VRARW +E++ Sbjct: 209 CVALIKSNGKLSEEELFAIVPGPDYPGGAQIISGASDIADAYRTGRGSLKVRARWKIEDL 268 Query: 262 GRGSWCIVVTEIPYQVQKSRLIEKIAEL------------------IIAKRIPLLEDIRD 303 RG W +VV E+P V +++E+I E+ + A + +L+ +RD Sbjct: 269 ARGQWQLVVNELPPGVSTQKVLEEIEEITNPKVKAGKKALSAEQTQLKAAMLSVLDVVRD 328 Query: 304 ESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361 ES++D VR+V PK + + + ++ + +ET P+N+ ++ + P L +L Sbjct: 329 ESSKDAAVRLVFEPKTSRISQEEFITTLLAQTSLETSSPINLTMVGIDGKPTQKSLRQML 388 Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRF 421 EW+A R + +RS R+ + R+ IL+G + LNIDE+IAIIR + PK +++RF Sbjct: 389 NEWIAFREITVEKRSRHRLNKVLERIHILEGRQLVLLNIDEVIAIIRAAEDPKAALIARF 448 Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481 +L+E Q + IL +RLR L +LE +I+ EL L E++K++ +L S + EI Sbjct: 449 NLSERQAEDILEIRLRQLARLEAIKIEQELKGLREEQKKLEDILGSPATLRRLLIKEIEA 508 Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS 541 + F RRT +A+K + + + EP+TV++S +GW+R+ K + + + Sbjct: 509 DAKTFEDP-----RRTLI----QAEKRAVAEVKVVDEPVTVIVSQKGWVRAQKGWASEKA 559 Query: 542 A--------LHFKEGDSLKIALHAHTTDRILLLSTDG----KAYTLPAGNLLSGRGHGEA 589 A FK GD+L A + D +L+ + + YT+P +L RG G+ Sbjct: 560 AGNGGAAPEYSFKSGDTLYGAFECRSVDTLLVFGSSKDKSVRVYTVPVASLPGARGDGQP 619 Query: 590 IQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649 + LI+L+ + F +L+ ++ G FI +++ R GK F+ V E+ Sbjct: 620 VTTLIELDAGTHVTHFFAGPVGASVLLANTGGYGFIATVENMMSRQRGGKAFIDVGEGEQ 679 Query: 650 M---KLVVKVTG-------DHVAVVGENRKLLIFSIDQIPEMSRG 684 + LV +G HVA ++L F I ++ + +G Sbjct: 680 LCRPSLVGGASGAEPMPAATHVACASTGGRILTFDIAELKSLPKG 724 >gi|71899845|ref|ZP_00681994.1| Gram negative topoisomerase IV, subunit A [Xylella fastidiosa Ann-1] gi|71730362|gb|EAO32444.1| Gram negative topoisomerase IV, subunit A [Xylella fastidiosa Ann-1] Length = 650 Score = 468 bits (1204), Expect = e-129, Method: Compositional matrix adjust. Identities = 243/576 (42%), Positives = 366/576 (63%), Gaps = 16/576 (2%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 + LR E YL Y++ + +RA+P + DG KPV RRII+AM E+ L+ A KKS R V Sbjct: 15 MPLREYAERAYLDYSMYVVLDRALPFIGDGLKPVQRRIIYAMHELRLNPKAKPKKSVRAV 74 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQ 138 G+VIGK HPHGD + Y++LV +AQPF RYPLI GQGNFG+ D S AA RYTE+++T Sbjct: 75 GDVIGKYHPHGDLACYEALVLMAQPFSYRYPLIEGQGNFGSSDDPKSFAAMRYTESKLTP 134 Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198 ++E++L + E V++ ++ EP PS+ P+LL NGT+GIAVGMAT +P HN+ E Sbjct: 135 ISEILLSELSEGTVNWITNFDGTLEEPAWLPSRLPHLLLNGTTGIAVGMATDVPPHNLNE 194 Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258 I A + L+DNP +I L +YI GPD+PT I+ + Y G G R RA + Sbjct: 195 IASALIHLLDNPNATIAALCQYIRGPDYPTAAEIITPPSDLQNLYETGNGSVRTRATYHK 254 Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLL--EDIRDES--AEDVRIVLF 314 E+ +V+T +PYQV S++IE+IA+ I +K++P L E +RDES VRIVLF Sbjct: 255 EDGN-----VVITSLPYQVSPSKVIEQIAQQIRSKKLPWLDGEGVRDESDHKNPVRIVLF 309 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 P+++ +D + LM +F +D+E +N+NV+ + PQV PL +L EWL+ R + + R Sbjct: 310 PRSQRIDVEQLMGHLFATTDLEKSHRVNLNVIGLDGRPQVKPLKQLLSEWLSFRSDTVTR 369 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNL 434 R +R+Q ++ R+ +L+GLLIA+LN+D++I IIRNED+PKPV+++RF L++ Q + IL+ Sbjct: 370 RLKYRLQKVESRLHMLEGLLIAFLNLDKVIHIIRNEDEPKPVLIARFGLSDAQTEYILDT 429 Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494 +LR L +LEE I+SE D L E+++I+ +L+S Q I E+ + + G Sbjct: 430 KLRQLARLEEMAIRSEQDALTKERDEINVILDSDVQLKKLIK------DELLADAKTFGD 483 Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIA 554 R +A +A + ++ EP+TVV+S +GWIR+ K H VD S + ++EGD L A Sbjct: 484 ARRAPLVARQAAQAIDESELVASEPMTVVLSEKGWIRAAKGHDVDPSGMSYREGDRLLAA 543 Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAI 590 + +T ++ L ++G+AY+ L + RG+GE + Sbjct: 544 VRTRSTHQVSFLDSEGRAYSTLVHTLPAARGNGEPL 579 >gi|1352715|sp|P48374|PARC_NEIGO RecName: Full=DNA topoisomerase 4 subunit A; AltName: Full=Topoisomerase IV subunit A gi|529410|gb|AAA82151.1| ParC [Neisseria gonorrhoeae] Length = 768 Score = 466 bits (1198), Expect = e-129, Method: Compositional matrix adjust. Identities = 276/750 (36%), Positives = 413/750 (55%), Gaps = 43/750 (5%) Query: 23 RFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEV 82 R+A E YL YA+S +K RA+P++ DG KPV RRI+ AM +MGL GA KSAR+VGE+ Sbjct: 19 RYA-ERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGEI 77 Query: 83 IGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAEL 142 +GK HPHGD S Y+++VR+AQ F RYPLI G GNFG+ DGD AAA RYTEAR+T +AEL Sbjct: 78 LGKYHPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGAAAMRYTEARLTPIAEL 137 Query: 143 ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEA 202 +L +++ VDF Y+ EP+ P++ P +L NG SGIAVGMAT IPSHN+ E+ +A Sbjct: 138 LLSEINQGTVDFMPNYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIPSHNLNEVTQA 197 Query: 203 ALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVG 262 A+AL+ P + L++YI PDF GG I+ + + Y G+G RVRAR+ +E++ Sbjct: 198 AIALLKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETGKGSVRVRARYEIEKLA 257 Query: 263 RGSWCIVVTEIPYQVQKSRLIEKIAELIIAK------------------RIPLLEDIRDE 304 RG W ++VTE+P ++++ +I E K + L++ +RDE Sbjct: 258 RGQWRVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDRLNTKKLMLDLIDRVRDE 317 Query: 305 S--AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362 S VR+V PK+ +D D + ++ + +E +N+ ++ + P L IL+ Sbjct: 318 SDGEHPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMMGLDNRPAQKNLKTILQ 377 Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS 422 EWL R + RR FR+ +++R+ IL+G L +L+IDE+I +IR D PK +++ F Sbjct: 378 EWLDFRIVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKVIRESDDPKADLMAVFG 437 Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482 LTE Q + IL +RLR L +LE ++++ EL+ L E+ +++ L ++ I + Sbjct: 438 LTEIQAEDILEIRLRQLARLEGFKLEKELNELREEQGRLNIFLGDENEKRKLI------I 491 Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542 KE+ + G R T E A +A L Q + EPIT+++S +GWIRS H++DLS Sbjct: 492 KEMQADMKQFGDARRTLVE--EAGRAVLTQTAAD-EPITLILSEKGWIRSRAGHNLDLSQ 548 Query: 543 LHFKEGDSLKIALHA-HTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD 601 FKEGD LK L H R G+ Y++ A + GRG G + LI+L + Sbjct: 549 TAFKEGDRLKQTLEGPHCFTRRHPRFIRGRTYSIDAAEIPGGRGDGVPVSSLIELQNGAK 608 Query: 602 IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH- 660 V L+ SS G FI + +++ + GK + S E + V V Sbjct: 609 PVAMLTGLPEQHYLLSSSGGYGFIAKLGDMVGRVKAGKVVMTADSGETVLPPVAVYASSF 668 Query: 661 -------VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWID 713 +A +NR L F I ++ M++GKG+++ + G S E I+ Sbjct: 669 INPDCKIIAATSQNRA-LAFPIGELKIMAKGKGLQIIGL-NAGESMTHTAVSSEPEILIE 726 Query: 714 SAGRSYNRSENDLLGWL--GKRGGVGSLVP 741 S GR ++ L L KRG G L+P Sbjct: 727 SEGRRGAAHKDRLPVALIEAKRGKKGRLLP 756 >gi|89892752|ref|YP_516239.1| DNA gyrase subunit A [Desulfitobacterium hafniense Y51] gi|89332200|dbj|BAE81795.1| DNA gyrase subunit A [Desulfitobacterium hafniense Y51] Length = 828 Score = 465 bits (1197), Expect = e-128, Method: Compositional matrix adjust. Identities = 284/752 (37%), Positives = 446/752 (59%), Gaps = 42/752 (5%) Query: 26 LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85 L++ ++ Y++S I RA+PD+RDG KPVHRRII+ + E+G+ + KSAR+VG+ +GK Sbjct: 19 LKKSFIDYSMSVIVSRALPDVRDGLKPVHRRIIYTLHELGMTPNKPYSKSARLVGDCMGK 78 Query: 86 LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145 HPHGD S+YD++VRLAQ F RYPLI G GNFG++DGDSAAA RYTEARM+++ + +L Sbjct: 79 FHPHGDSSIYDAVVRLAQDFSTRYPLIDGHGNFGSVDGDSAAAMRYTEARMSKITQYMLA 138 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 +D+D VDF+ Y+E + EP V P+KFPNLL NG++GIAVGMAT+IP HN+ E+ E +A Sbjct: 139 DIDKDTVDFQPNYDEREQEPKVMPAKFPNLLVNGSAGIAVGMATNIPPHNLTEVIEGTIA 198 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGR-G 264 IDNPEI I++L+ YI GPDFPTG I+ + E I+ +YR G+G FR RA+ VEE+ + G Sbjct: 199 QIDNPEIEIKELMTYIKGPDFPTGASIMGT-EGIISAYRTGKGSFRTRAKAHVEEMEKSG 257 Query: 265 SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDL 324 I+VTEIPY V K+RL+EKIAEL+ KRI + D+RDES ++ R ++P + Sbjct: 258 KMRIIVTEIPYMVNKARLVEKIAELVREKRIEGITDLRDESDRTGMRIVMELRRDVNPQV 317 Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384 L+ ++ + ME F +N+ L G+ P+V+ L I+ ++ H+++V+ RR+ F + + Sbjct: 318 LLNQLYKHTQMEESFGVNILALVDGQ-PKVLNLKQIIHYFIEHQKDVIVRRTRFELNKAE 376 Query: 385 RRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAILNLRLRSLRK 441 IL+GL IA IDE+I+IIR +E K ++SRF L++ Q AI+++RL+ L Sbjct: 377 AEAHILEGLRIALDYIDEVISIIRTSADEQSAKDNLMSRFGLSDKQSQAIVDMRLKRLTG 436 Query: 442 LEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCE 501 LE +I+ + + + ++LNS + N I E++EVKE F RRT E Sbjct: 437 LEREKIEEQYQKIQETIAYLKAVLNSEQMVLNIIKQELQEVKEKFGDE-----RRT---E 488 Query: 502 VSRADKATLQQAMIEKEPITVVISNRGWIRSL-----KSHSVDLSALH---FKEGDSLKI 553 +S + +I+ E + + +S+RG+I+ + KS +H +E D ++ Sbjct: 489 ISFDATHMNIEDLIDDEEVVITMSHRGYIKRMPLNTYKSQRRGGKGVHGMATREEDFVEK 548 Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEAIQLLIDLNHNQDIVTAFV---- 607 T IL +T GK Y L A + +GR G G A+ L+ +N +++ +TA + Sbjct: 549 IFTTSTHQYILFFTTRGKVYRLKAHEIPEAGRTGKGTALVNLLSINPSEEKITAVLSIRK 608 Query: 608 YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT--GDHVAVVG 665 Y+ L + + KG E + + G + +S ++++ + V++T +H+ + Sbjct: 609 YNEDFHLFMATRKGIVKKTLLKEYDSPRKDGLIAISLSGDDEL-IDVRLTKPDEHIIIAT 667 Query: 666 ENRKLLIFSIDQIPEMSRG----KGVRLQSYKDGGIS-DVICFKICEGLTWID-SAGRSY 719 +N + F + +M R KG+ L+ +D +S DVI + E L+ + + Sbjct: 668 KNGLCIRFLESDVRQMGRTAHGVKGISLEK-EDLVVSMDVIYEEEAEILSMTELGFSKRT 726 Query: 720 NRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751 + SE + G RGG G + K ++GK + Sbjct: 727 SLSEYRVQG----RGGKGIIATKLNAKTGKLV 754 >gi|219666077|ref|YP_002456512.1| DNA gyrase subunit alpha [Desulfitobacterium hafniense DCB-2] gi|219536337|gb|ACL18076.1| DNA gyrase, A subunit [Desulfitobacterium hafniense DCB-2] Length = 828 Score = 465 bits (1197), Expect = e-128, Method: Compositional matrix adjust. Identities = 284/752 (37%), Positives = 445/752 (59%), Gaps = 42/752 (5%) Query: 26 LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85 L++ ++ Y++S I RA+PD+RDG KPVHRRII+ + E+G+ + KSAR+VG+ +GK Sbjct: 19 LKKSFIDYSMSVIVSRALPDVRDGLKPVHRRIIYTLHELGMTPNKPYSKSARLVGDCMGK 78 Query: 86 LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145 HPHGD S+YD++VRLAQ F RYPLI G GNFG++DGDSAAA RYTEARM ++ + +L Sbjct: 79 FHPHGDSSIYDAVVRLAQDFSTRYPLIDGHGNFGSVDGDSAAAMRYTEARMAKITQYMLA 138 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 +D+D VDF+ Y+E + EP V P+KFPNLL NG++GIAVGMAT+IP HN+ E+ E +A Sbjct: 139 DIDKDTVDFQPNYDEREQEPKVMPAKFPNLLVNGSAGIAVGMATNIPPHNLTEVIEGTIA 198 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGR-G 264 IDNPEI I++L+ YI GPDFPTG I+ + E I+ +YR G+G FR RA+ VEE+ + G Sbjct: 199 QIDNPEIEIKELMNYIKGPDFPTGASIMGT-EGIISAYRTGKGSFRTRAKAHVEEMEKSG 257 Query: 265 SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDL 324 I+VTEIPY V K+RL+EKIAEL+ KRI + D+RDES ++ R ++P + Sbjct: 258 KMRIIVTEIPYMVNKARLVEKIAELVREKRIEGITDLRDESDRTGMRIVMELRRDVNPQV 317 Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384 L+ ++ + ME F +N+ L G+ P+V+ L I+ ++ H+++V+ RR+ F + + Sbjct: 318 LLNQLYKHTQMEESFGVNILALVDGQ-PKVLNLKQIIHYFIEHQKDVIVRRTRFELNKAE 376 Query: 385 RRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAILNLRLRSLRK 441 IL+GL IA IDE+I+IIR +E K ++SRF L++ Q AI+++RL+ L Sbjct: 377 AEAHILEGLRIALDYIDEVISIIRTSADEQSAKDNLMSRFGLSDKQSQAIVDMRLKRLTG 436 Query: 442 LEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCE 501 LE +I+ + + + ++LNS + N I E++EVKE F RRT E Sbjct: 437 LEREKIEEQYQKIQETIAYLKAVLNSEQMVLNIIKQELQEVKEKFGDE-----RRT---E 488 Query: 502 VSRADKATLQQAMIEKEPITVVISNRGWIRSL-----KSHSVDLSALH---FKEGDSLKI 553 +S + +I+ E + + +S+RG+I+ + KS +H +E D ++ Sbjct: 489 ISFDATHMNIEDLIDDEEVVITMSHRGYIKRMPLNTYKSQRRGGKGVHGMATREEDFVEK 548 Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEAIQLLIDLNHNQDIVTAFV---- 607 T IL +T GK Y L A + +GR G G A+ L+ +N +++ +TA + Sbjct: 549 IFTTSTHQYILFFTTRGKVYRLKAHEIPEAGRTGKGTALVNLLSINPSEEKITAVLSIRK 608 Query: 608 YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT--GDHVAVVG 665 Y+ L + + KG E + + G + +S ++++ + V++T +H+ + Sbjct: 609 YNEDFHLFMATRKGIVKKTLLKEYDSPRKDGLIAISLSGDDEL-IDVRLTKPDEHIIIAT 667 Query: 666 ENRKLLIFSIDQIPEMSRG----KGVRLQSYKDGGIS-DVICFKICEGLTWID-SAGRSY 719 +N + F + +M R KG+ L+ +D +S DVI + E L+ + + Sbjct: 668 KNGLCIRFLESDVRQMGRTAHGVKGISLEK-EDLVVSMDVIYEEEAEILSMTELGFSKRT 726 Query: 720 NRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751 + SE + G RGG G + K ++GK + Sbjct: 727 SLSEYRVQG----RGGKGIIATKLNAKTGKLV 754 >gi|330998783|ref|ZP_08322511.1| DNA topoisomerase IV, A subunit [Parasutterella excrementihominis YIT 11859] gi|329576280|gb|EGG57796.1| DNA topoisomerase IV, A subunit [Parasutterella excrementihominis YIT 11859] Length = 939 Score = 463 bits (1192), Expect = e-128, Method: Compositional matrix adjust. Identities = 257/719 (35%), Positives = 416/719 (57%), Gaps = 39/719 (5%) Query: 2 GVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61 G D + + + + ++L + YL YA+S +K RA+PD+ DG KPV RRI++AM Sbjct: 152 GSDIVEEALKHADTDCDELTLAYFASRAYLEYAISVVKGRALPDVCDGMKPVQRRILYAM 211 Query: 62 SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121 +GL+ KSAR+VGEV+GK HPHGD + YD++VRLAQ F RYPL+ GQGNFG+ Sbjct: 212 KRLGLNPDVKTVKSARVVGEVLGKYHPHGDSAAYDAMVRLAQDFTMRYPLVQGQGNFGSA 271 Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181 DGD AAA RYTE R+++ A+L+L +D+ V F Y+ EPV+ P++ P LL NG+S Sbjct: 272 DGDGAAAMRYTEVRLSKYADLLLGELDKGTVKFIPNYDGTHKEPVLLPARLPVLLLNGSS 331 Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241 GIAVGMAT IPSHN+ E+ EAA+ +I NPEI+ ++LLE + GPDFP G ++ S I Sbjct: 332 GIAVGMATEIPSHNLTEVGEAAIEVIRNPEITTDELLEIVKGPDFPGGAQVISSASDIKN 391 Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAEL-----------I 290 YR G G +VRA + EE+ RG W +V +PY+V +++ ++ L + Sbjct: 392 VYRSGYGNLQVRATYHFEELSRGQWQLVFDSVPYKVSVMKVMSELEALTNPKAPQGKKSL 451 Query: 291 IAKR-------IPLLEDIRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPL 341 AK+ + ++ +RDES+ + VR+V+ PK++S+D + L+ +I + +ET Sbjct: 452 TAKQQQDKQLIMNVMSGMRDESSAEAPVRLVIDPKSKSIDREELVSTILSKTSLETSCKF 511 Query: 342 NMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNID 401 N+ V+ + P+ L IL EW++ R + RS + + R+ L+G LI ++I+ Sbjct: 512 NLVVIGIDGKPRQKGLKDILSEWVSFRLRTVRARSQTSLNEAEARIHTLEGRLIVLVDIE 571 Query: 402 EIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKI 461 E+I IIR D PK +++ F L++ Q + IL ++LR L L+E +++ EL+ L E E++ Sbjct: 572 EVIRIIRGADDPKKELITHFGLSDTQAEDILEIKLRQLASLDEVKLRKELEKLRNEAERL 631 Query: 462 DSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPIT 521 LL K+ ++ EIR+ + + G R T E ++ A++ + +I+ EP+T Sbjct: 632 RGLLTDEKKLRREVTKEIRQDIDTY------GDERRTLIEEAKG--ASIAKQVID-EPVT 682 Query: 522 VVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL 581 V++S +G++RS + H D A++FK GD + ++ + D + +LS G+ Y++P +L Sbjct: 683 VIVSEKGFLRSRQGHGFDARAMNFKLGDKYRCSMECRSVDNLYILSNTGRIYSIPVSSLP 742 Query: 582 SGRGHGEAIQLLIDLNHNQDIVTAFVY---DSTCKLLVVSSKGNAFIVEESEIIANTRKG 638 S RG G + + QD F Y S LL S F + S++ R G Sbjct: 743 SARGEGTHVSAFVQF---QDGDVPFDYICGASDTVLLFTSDAAMGFFCKMSDLAVRQRGG 799 Query: 639 KTFLKVSSEEKMKLVVK--VTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKD 694 K+F + + + + V +TG +A + + +L++F+ D++ +S GKG + + +D Sbjct: 800 KSFFILDGAKPLPVQVSTPLTG-WIAALSSSGRLVVFTTDELRALSSGGKGTTIMALQD 857 >gi|303257798|ref|ZP_07343808.1| DNA topoisomerase IV, A subunit [Burkholderiales bacterium 1_1_47] gi|302859401|gb|EFL82482.1| DNA topoisomerase IV, A subunit [Burkholderiales bacterium 1_1_47] Length = 813 Score = 462 bits (1188), Expect = e-127, Method: Compositional matrix adjust. Identities = 257/719 (35%), Positives = 414/719 (57%), Gaps = 39/719 (5%) Query: 2 GVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61 G D + + + + ++L + YL YA+S +K RA+PD+ DG KPV RRI++AM Sbjct: 26 GSDIVEEALKHADTDCDELTLAYFASRAYLEYAISVVKGRALPDVCDGMKPVQRRILYAM 85 Query: 62 SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121 +GL+ KSAR+VGEV+GK HPHGD + YD++VRLAQ F RYPL+ GQGNFG+ Sbjct: 86 KRLGLNPDVKTVKSARVVGEVLGKYHPHGDLAAYDAMVRLAQDFTMRYPLVQGQGNFGSA 145 Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181 DGD AAA RYTE R+++ A+L+L +D+ V F Y+ EPV+ P++ P LL NG+S Sbjct: 146 DGDGAAAMRYTEVRLSKYADLLLGELDKGTVKFIPNYDGTHKEPVLLPARLPVLLLNGSS 205 Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241 GIAVGMAT IPSHN+ E+ EAA+ +I NPEI+ ++LLE + GPDFP G ++ S I Sbjct: 206 GIAVGMATEIPSHNLTEVGEAAIEVIRNPEITTDELLEIVKGPDFPGGAQVISSASDIKN 265 Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAEL-----------I 290 YR G G +VRA + EE+ RG W +V +PY+V +++ ++ L + Sbjct: 266 VYRSGYGNLQVRATYHFEELSRGQWQLVFDSVPYKVSVMKVMSELEALTNPKAPQGKKSL 325 Query: 291 IAKR-------IPLLEDIRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPL 341 AK+ + ++ +RDES+ + VR+V+ PK++S+D + L+ +I + +ET Sbjct: 326 TAKQQQDKQLIMNVMSGMRDESSAEAPVRLVIDPKSKSIDREELVSTILSKTSLETSCKF 385 Query: 342 NMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNID 401 N+ V+ + P+ L IL EW++ R + RS + + R+ L+G LI ++I+ Sbjct: 386 NLVVIGIDGKPRQKGLKDILSEWVSFRLRTVRARSQTSLNEAEARIHTLEGRLIVLVDIE 445 Query: 402 EIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKI 461 E+I IIR D PK +++ F L++ Q + IL ++LR L L+E +++ EL+ L E E++ Sbjct: 446 EVIRIIRGTDDPKKELITHFGLSDTQAEDILEIKLRQLASLDEVKLRKELEKLRNEAERL 505 Query: 462 DSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPIT 521 LL K+ ++ EIR+ + + G R T E A A++ + +I+ EP+T Sbjct: 506 RGLLTDEKKLRREVTKEIRQDIDTY------GDERRTLIE--EAKGASIAKQVID-EPVT 556 Query: 522 VVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL 581 V++S +G++RS + H D A++FK GD + ++ + D + +LS G+ Y++P +L Sbjct: 557 VIVSEKGFLRSRQGHGFDARAMNFKLGDKYRCSMECRSVDNLYILSNTGRIYSIPVSSLP 616 Query: 582 SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK---LLVVSSKGNAFIVEESEIIANTRKG 638 S RG G + + QD F Y LL S F + S++ R G Sbjct: 617 SARGEGTHVSAFVQF---QDGDVPFDYICGAPDTVLLFTSDAAMGFFCKMSDLAVRQRGG 673 Query: 639 KTFLKVSSEEKMKLVVK--VTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKD 694 K+F + + + + V +TG +A + + +L++F+ D++ +S GKG + + +D Sbjct: 674 KSFFILDGAKPLPVQVSTPLTG-WIAALSSSGRLVVFTTDELRALSSGGKGTTIMALQD 731 >gi|257127027|ref|YP_003165141.1| DNA gyrase subunit alpha [Leptotrichia buccalis C-1013-b] gi|257050966|gb|ACV40150.1| DNA gyrase, A subunit [Leptotrichia buccalis C-1013-b] Length = 855 Score = 462 bits (1188), Expect = e-127, Method: Compositional matrix adjust. Identities = 274/715 (38%), Positives = 429/715 (60%), Gaps = 48/715 (6%) Query: 5 NISN-SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63 ++SN SN +E+ +KA YL Y++S I RA+PD+RDG KPVHRRI+ +MSE Sbjct: 36 DLSNESNVYIEDEIKAA---------YLDYSMSVIVSRALPDVRDGLKPVHRRILFSMSE 86 Query: 64 MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123 MG+ FKKSARIVG+V+GK HPHGD SVY ++VR+AQ F RY LI G GNFG+IDG Sbjct: 87 MGMSHKTPFKKSARIVGDVLGKYHPHGDSSVYGAMVRMAQDFNMRYELIDGHGNFGSIDG 146 Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183 D AAA RYTEARM ++ E +L+ + +D +D+R ++E EPVV P+K PNLL NG +GI Sbjct: 147 DEAAAMRYTEARMAKITEELLEDIRKDTIDYRKNFDESLDEPVVLPAKLPNLLLNGANGI 206 Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243 AVGMAT+IP HN+ E+ + +ALIDNPEISI++L+ YI GPDFPTGGII ++ I ++Y Sbjct: 207 AVGMATNIPPHNLGEVVDGIIALIDNPEISIDELITYIKGPDFPTGGII-NGKQGIYDAY 265 Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303 R GRG RV R VE G I+VTE+PYQV K+RLIEKIA+L+ K+I + D+RD Sbjct: 266 RTGRGKLRVAGRVEVETSKTGKESIIVTELPYQVNKARLIEKIADLVRQKKITGISDLRD 325 Query: 304 ESAED-VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362 E+ D +RIV+ K + + +L++ S++ +D++ F + M L + P+V+ L IL+ Sbjct: 326 ETDRDGIRIVIELK-KGEESELILNSLYKFTDLQNTFGVIMLAL-VDNAPRVLNLKQILQ 383 Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVS 419 ++L HR EV+ RR+ F ++ R IL+G IA NI+E+I IIR + + + +++ Sbjct: 384 KYLEHRFEVITRRTEFELKKAKNRAHILEGFKIALDNIEEVIRIIRASKDANVARAELIA 443 Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479 +F +E Q AIL++RL+ L LE +I E + L+ E++ +L+ + + I E Sbjct: 444 KFGFSEIQAKAILDMRLQRLTGLERDKINQEYNELMLLIEELTGILSDDSKIYGIIKEEG 503 Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------R 531 ++KE D G R T +RA+ + + +I+ E + V ++ +G++ R Sbjct: 504 LKLKE------DFGDERRTEIRNARAEISI--EDLIKDEEVVVTLTEKGYVKRVAIDTYR 555 Query: 532 SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEA 589 S K + ++A + E D +K A D +L+ +T GK +++ + + G+ Sbjct: 556 SQKRGGIGVNATNTVEDDVVKDMYIAKALDTLLIFTTKGKVFSIKVYEIPETGKQARGKL 615 Query: 590 IQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESE--IIANTRK-GKTFLK 643 I +I+L+ ++ + T ++ L V+ G +V++SE + N +K GK ++ Sbjct: 616 IGNIINLDDDEKVSTIIKVREFEKNKNLFFVTRNG---VVKKSELTLFDNIKKAGKRAIR 672 Query: 644 VSSEEKMKLVVKVTG---DHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKD 694 ++ ++++ + +G D + +N + FS + M G GVR + +D Sbjct: 673 LNEDDEVMFIGLTSGSGEDEIFAATKNGIAIRFSEKDVRSMGTGAAGVRGINLRD 727 >gi|71907479|ref|YP_285066.1| DNA topoisomerase IV subunit A [Dechloromonas aromatica RCB] gi|71847100|gb|AAZ46596.1| DNA topoisomerase IV subunit A [Dechloromonas aromatica RCB] Length = 805 Score = 460 bits (1183), Expect = e-127, Method: Compositional matrix adjust. Identities = 247/686 (36%), Positives = 392/686 (57%), Gaps = 30/686 (4%) Query: 29 RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHP 88 RYL YA+S + RA+P DG KPV RRI++AM MGL KSAR+VG+VIGK HP Sbjct: 77 RYLEYAMSVVTGRALPSAADGQKPVQRRILYAMHRMGLYKSPRHVKSARVVGDVIGKYHP 136 Query: 89 HGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVD 148 HGD SVYD++VR+AQ + RYP++ GQGNFG+ DGD+AAA RYTEAR+T +AEL+L +D Sbjct: 137 HGDSSVYDAMVRMAQDWSLRYPIVDGQGNFGSRDGDNAAAMRYTEARLTPIAELLLAELD 196 Query: 149 EDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208 E VD++ Y+ + EP + P++ P L NG SGIAVGMAT IP+HN++E+ AA+ LI Sbjct: 197 EGTVDWKPNYDGANDEPALLPARLPFALLNGASGIAVGMATEIPAHNLREVANAAVNLIR 256 Query: 209 NPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCI 268 NP+ +++L+ I GPD+P G I+ S E I +YR GRG RVRA+W +E + RG W + Sbjct: 257 NPDFGEDEVLKLIPGPDYPGGAQIISSPEEIAATYRSGRGSLRVRAKWKIENLARGQWKL 316 Query: 269 VVTEIPYQVQKSRLIEKI-------AELIIAKRIPLLED---------------IRDESA 306 V+TE+P V + ++ +I A+ K++ E +RDES Sbjct: 317 VITELPPGVSTATVMSEIEACSNPVAKEKAGKKVFTPEQLNLKAAFLSSISESGVRDESG 376 Query: 307 ED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364 ++ VR+V+ P + D L+ + + +ET +N+ +L + P+ L ++ EW Sbjct: 377 KEHAVRLVIEPASSRQGQDDLVRMLLAHTSLETNASINLTILGVNGTPRQASLYSMIAEW 436 Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLT 424 R + RR+ R+ A ++R+ IL+G L+ID +I +IR D PK +++ F L+ Sbjct: 437 CRFRLTTVERRTRHRLTAAEKRIHILEGRQAILLDIDRVIKVIRESDDPKADLMAHFKLS 496 Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484 E Q + IL +RLR L +LE +I EL L E ++ LL+S + +A EI + Sbjct: 497 EIQAEDILEIRLRQLARLEGIKIGEELAKLREEAAGLNKLLDSEEALRACVAAEIEADAK 556 Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH 544 + RRT ++ + + I EP T+++S GW+RS H++D + L Sbjct: 557 KYGDD-----RRTLIEADAKVTMSDAKTVSIVDEPTTLIVSKHGWLRSRTGHNIDPTQLT 611 Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVT 604 F+ GDSL L T D +++L G+AY++ A ++ G+G G ++D + Sbjct: 612 FRSGDSLLACLPCRTVDSLIILDHLGRAYSISAADIPGGKGDGVPATSVVDFQDGGKLCL 671 Query: 605 AFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAV 663 A + + LV + G F + S+ ++ + GK FL + E + + + +A Sbjct: 672 ALSTSADKRYLVAADGGYGFRCQGSDFLSRGKAGKAFLTLGDGEAPAIFMPAPAEGEIAC 731 Query: 664 VGENRKLLIFSIDQIPEMSRGKGVRL 689 V ++ + L+F+I+++ +++G+G++L Sbjct: 732 VTKDGRALVFNIEEVRLLAKGRGLKL 757 >gi|262039493|ref|ZP_06012795.1| DNA gyrase, A subunit [Leptotrichia goodfellowii F0264] gi|261746474|gb|EEY34011.1| DNA gyrase, A subunit [Leptotrichia goodfellowii F0264] Length = 853 Score = 457 bits (1177), Expect = e-126, Method: Compositional matrix adjust. Identities = 283/777 (36%), Positives = 448/777 (57%), Gaps = 54/777 (6%) Query: 5 NISNS-NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63 N++N N +E+ +KA YL Y++S I RA+PD+RDG KPVHRRI+ AM+E Sbjct: 35 NMTNEVNIYIEDEIKA---------SYLDYSMSVIVSRALPDVRDGLKPVHRRILFAMNE 85 Query: 64 MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123 MG+ FKKSARIVGEV+GK HPHGD SVY+++VRLAQ F RY L+ G GNFG++DG Sbjct: 86 MGMTHDKPFKKSARIVGEVLGKYHPHGDSSVYNAMVRLAQDFNMRYLLVDGHGNFGSVDG 145 Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183 D AAA RYTEARM ++ +L +D++ +DFR ++E EP V P+K PNLL NG++GI Sbjct: 146 DEAAAMRYTEARMAKITAELLADIDKNTIDFRKNFDESLDEPTVLPAKLPNLLLNGSTGI 205 Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243 AVGMAT+IP HN+ EIC+ +ALIDN EIS+++L+ YI GPDFPTGGII ++ I E+Y Sbjct: 206 AVGMATNIPPHNLSEICDGIVALIDNREISVDELINYIKGPDFPTGGII-NGKQGIYEAY 264 Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303 R GRG +V + +E G I+VTE+PYQV K+RLIEKIAEL+ K++ + D+RD Sbjct: 265 RTGRGKIKVAGKVKIETSKTGKESIIVTELPYQVNKARLIEKIAELVRHKKLTGISDLRD 324 Query: 304 ES-AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362 ES E +RIV+ K + + +L++ S++ +D++ F + M L + P+V+ L IL+ Sbjct: 325 ESDREGIRIVIELK-KGEESELILNSLYKFTDLQNTFGIIMLAL-VNNAPRVLNLKQILE 382 Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVS 419 +L HR V+ RR F + + R IL+G IA NIDE+I IIR + ++ + +++ Sbjct: 383 NYLEHRYNVITRRVQFELNKAENRAHILEGFKIALDNIDEVIRIIRGSKDANEAREKLIA 442 Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479 F +E Q AIL++RL+ L LE +I+ E L+ E++ S+L +++ I E+ Sbjct: 443 SFGFSEIQAKAILDMRLQRLTGLERDKIEQEYRELMLLIEELRSILADDSKKYRIIKDEV 502 Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR-------- 531 ++KE D G +R T + +R + + +I+ E + V ++ +G+++ Sbjct: 503 IKLKE------DFGDKRRTEIKEARVEIGI--EDLIKDEDVVVTLTEKGYVKRTSIDTYH 554 Query: 532 SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEA 589 S + + ++A + E D +K A D +L+ +T GK +++ + + G+ Sbjct: 555 SQRRGGIGVNATNTVEDDVIKDMYIAKNLDTLLIFTTKGKVFSMKVYEIPEAGKQARGKL 614 Query: 590 IQLLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESE--IIANTRK-GKTFLK 643 I LI L+ ++ + T ++ + ++ G +V++++ + AN K G L Sbjct: 615 ISNLIKLSEDERVSTVIRVREFEKDKAIFFITKDG---VVKKTDLTLFANINKTGIRALT 671 Query: 644 VSSEEKMKLVVKVTG---DHVAVVGENRKLLIFSIDQIPEMSRG----KGVRLQSYKDGG 696 + E+++K +G D + + N + F + + M R KG+ L+ KD Sbjct: 672 LRDEDELKFAGLTSGSEKDEIFIATRNGISIRFCEEDVRVMGRTAAGVKGITLRD-KDYV 730 Query: 697 ISDVICF--KICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751 ++ VI KI E L+ + Y + + RGG G + K ++GK + Sbjct: 731 VAAVIINPEKISEELSVMTITEEGYGKRTALSEYKVQSRGGKGIINLKINEKTGKIV 787 >gi|262195364|ref|YP_003266573.1| DNA topoisomerase (ATP-hydrolyzing) [Haliangium ochraceum DSM 14365] gi|262078711|gb|ACY14680.1| DNA topoisomerase (ATP-hydrolyzing) [Haliangium ochraceum DSM 14365] Length = 787 Score = 456 bits (1172), Expect = e-126, Method: Compositional matrix adjust. Identities = 283/739 (38%), Positives = 419/739 (56%), Gaps = 35/739 (4%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM-SEMGLDFGAAFKKSARI 78 SL+ RYL YALS I RA+PD+RDG KPV RRI++AM ++ L A KKSA++ Sbjct: 31 ASLQAEARRRYLNYALSVITARALPDVRDGLKPVQRRILYAMQADEKLSHEAKHKKSAKV 90 Query: 79 VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138 VG VIG+ HPHGD +VYD++VR+AQPF R PL+ G GNFG++DGDS AAYRYTEAR+T Sbjct: 91 VGAVIGRYHPHGDTAVYDAMVRMAQPFSLRLPLVDGSGNFGSLDGDSPAAYRYTEARLTA 150 Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198 A +L + V FR Y+ EP V P++FPNLL NG++GIAVGMAT+IP HN++E Sbjct: 151 AAMQLLDELKYATVPFRANYDATAEEPTVLPARFPNLLVNGSTGIAVGMATNIPPHNLRE 210 Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258 + +A +AL D+PE+++ LL+YI GPDFPTGG I+ S+ + E Y GRG RVR + + Sbjct: 211 LTKALIALADDPELNVSGLLKYIKGPDFPTGGQILNSKAELREIYEEGRGAIRVRGEYKL 270 Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318 E R S +VVT +PY V K+ ++E+IAE+II +++P L D+RDES DVR+VL K + Sbjct: 271 ETQKR-SKILVVTSVPYGVTKATVVERIAEVIIKRKLPQLLDVRDESTTDVRVVLEIK-K 328 Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVL----SMGRVPQVMPLDGILKEWLAHRREVLFR 374 DP+++M +F + ++ F +N+ L + P + L +L+ +L R EV R Sbjct: 329 DADPEMIMAYLFKHTPLQLNFNVNLTCLVPSGNDASQPAQLGLKDMLRHFLDFRYEVTER 388 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVDAI 431 R F + A+ RR+ IL+G ++ + +DE I IIR D + ++ +F L + QVDAI Sbjct: 389 RYQFELAALLRRIHILEGFVVIFDALDETIRIIRRSDGRQDAAQKIMKKFGLDKEQVDAI 448 Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491 L LRL L KLE I+ EL + ++ + I+++L S K+ W + E+ EV E+ Sbjct: 449 LELRLYRLAKLEINIIREELADKRSQAKSIEAILRSEKKLWGVVKTELGEVAEL------ 502 Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551 LG R T + A+ A I E VV++ GW++ + D ++ +EGD + Sbjct: 503 LGDARRTKTGGAAAELEFDADAYIIDEDAHVVLTRDGWLKRQRELK-DPTSTRLREGDEV 561 Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611 L T + + + G AY + ++ + G+G+ +Q L + IV A +D Sbjct: 562 MAVLAGSTKEHVAFFTNYGSAYVIKIYDVPATSGYGDPVQKLFKFKDGERIVAAMAFDPR 621 Query: 612 C----KLLVVSSKG-NAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGE 666 +LL VSS G E TR G+ F + +++ VV D + VV Sbjct: 622 AMPPDELLTVSSGGFGQRFASEPFTQPTTRAGRKFARPPKGDEIVDVVATEEDDIVVVAT 681 Query: 667 NRKL-LIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICF----KICEGLTWIDSA--GRS 718 + L +I ++ GKGV + K G VI F + E L +++SA GR+ Sbjct: 682 RKGYTLACRSGEINKLENPGKGVTV--IKTGEHDKVIGFISGGRRAEAL-YVESAKGGRT 738 Query: 719 YNRSENDLLGWLGKRGGVG 737 + + + L RGG G Sbjct: 739 FEL--HAVAQRLTTRGGKG 755 >gi|260890950|ref|ZP_05902213.1| DNA gyrase, A subunit [Leptotrichia hofstadii F0254] gi|260859503|gb|EEX74003.1| DNA gyrase, A subunit [Leptotrichia hofstadii F0254] Length = 645 Score = 455 bits (1170), Expect = e-125, Method: Compositional matrix adjust. Identities = 253/615 (41%), Positives = 384/615 (62%), Gaps = 35/615 (5%) Query: 5 NISN-SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63 ++SN SN +E+ +KA YL Y++S I RA+PD+RDG KPVHRRI+ +MSE Sbjct: 36 DLSNESNVYIEDEIKAA---------YLDYSMSVIVSRALPDVRDGLKPVHRRILFSMSE 86 Query: 64 MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123 MG+ FKKSARIVG+V+GK HPHGD SVY ++VR+AQ F RY LI G GNFG+IDG Sbjct: 87 MGMSHKTPFKKSARIVGDVLGKYHPHGDSSVYGAMVRMAQDFNMRYELIDGHGNFGSIDG 146 Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183 D AAA RYTEARM ++ E +L + +D +D+R ++E EPVV P+K PNLL NG +GI Sbjct: 147 DEAAAMRYTEARMAKITEELLADIGKDTIDYRKNFDESLDEPVVLPAKLPNLLLNGANGI 206 Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243 AVGMAT+IP HN+ E+ + +ALIDNPEISI++L+ YI GPDFPTGGII ++ I ++Y Sbjct: 207 AVGMATNIPPHNLGEVVDGIVALIDNPEISIDELITYIKGPDFPTGGII-NGKQGIYDAY 265 Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303 R GRG RV R VE G I+VTE+PYQV K+RLIEKIA+L+ K+I + D+RD Sbjct: 266 RTGRGKLRVAGRVEVETSKTGKESIIVTELPYQVNKARLIEKIADLVRQKKITGISDLRD 325 Query: 304 ESAED-VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362 E+ D +RIV+ K + + +L++ S++ +D++ F + M L + P+V+ L +L+ Sbjct: 326 ETDRDGIRIVIELK-KGEESELILNSLYKFTDLQNTFGVIMLAL-VDNAPRVLNLKQVLQ 383 Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVS 419 ++L HR EV+ RR+ F ++ R IL+G IA NI+E+I IIR + + + +++ Sbjct: 384 KYLEHRFEVITRRTEFELKKAKNRAHILEGFKIALDNIEEVIRIIRASKDANVARTELIA 443 Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479 +F +E Q AIL++RL+ L LE +I E + L+ E++ +L+ + + I E Sbjct: 444 KFGFSEIQAKAILDMRLQRLTGLERDKINQEYNELMLLIEELTGILSDDSKIYGIIKEEA 503 Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------R 531 ++KE D G R T +RA+ + + +I+ E + V ++ +G++ R Sbjct: 504 LKLKE------DFGDERRTEIRNARAEISI--EDLIKDEEVVVTLTEKGYVKRVAIDTYR 555 Query: 532 SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEA 589 S K + ++A + E D +K A T D +L+ +T GK +++ + + G+ Sbjct: 556 SQKRGGIGVNATNTIEDDVVKDMYIAKTLDTLLIFTTKGKVFSVKVYEIPETGKQARGKL 615 Query: 590 IQLLIDLNHNQDIVT 604 I +I+L+ ++ + T Sbjct: 616 IGNIINLDTDEKVST 630 >gi|198283801|ref|YP_002220122.1| DNA topoisomerase IV subunit A [Acidithiobacillus ferrooxidans ATCC 53993] gi|218666998|ref|YP_002426432.1| DNA topoisomerase IV, A subunit [Acidithiobacillus ferrooxidans ATCC 23270] gi|198248322|gb|ACH83915.1| DNA topoisomerase IV, A subunit [Acidithiobacillus ferrooxidans ATCC 53993] gi|218519211|gb|ACK79797.1| DNA topoisomerase IV, A subunit [Acidithiobacillus ferrooxidans ATCC 23270] Length = 801 Score = 454 bits (1169), Expect = e-125, Method: Compositional matrix adjust. Identities = 260/684 (38%), Positives = 394/684 (57%), Gaps = 37/684 (5%) Query: 35 LSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSV 94 +S + RAIP L DG KPV RRI++AM +MGL KSAR+VGEVIGK HPHGD SV Sbjct: 81 MSVVTGRAIPALADGQKPVQRRILYAMRDMGLQRSPQHVKSARVVGEVIGKWHPHGDTSV 140 Query: 95 YDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDF 154 YD++VR+AQ F RYP++ GQGNFG++DGDSAAA RYTEA +T ++EL+L +DE VDF Sbjct: 141 YDAMVRMAQHFTLRYPVVDGQGNFGSLDGDSAAAMRYTEANLTPISELLLAEMDEGTVDF 200 Query: 155 RDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISI 214 R Y+ EPV P++ P LL NG SGIAVGMAT IP HN++E+ + L+ P+++ Sbjct: 201 RSNYDGTLEEPVTLPARLPFLLMNGASGIAVGMATEIPPHNLRELAQVCAELVLRPDMAD 260 Query: 215 EKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIP 274 +++L+ I GPDFP GG I+ + I E+Y GRG RVRARW VE++ RG W I V ++P Sbjct: 261 DEILQQIPGPDFPGGGQIISTPGQIREAYLSGRGSIRVRARWEVEKLARGEWRIAVQQLP 320 Query: 275 YQVQKSRLIEKIAELIIAKR--------------------IPLLEDIRDES--AEDVRIV 312 V ++++ +I L + + ++ +RDES A VRIV Sbjct: 321 PGVSTAQILSEIETLSNPQAKGEGKKKALTPEQQATKNAMLSQMDTVRDESGKAHAVRIV 380 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSM-GRVPQVMPLDGILKEWLAHRREV 371 + P++R+ DP LM + + +E+ +N+ VL + G+ P MPL IL++W+ +R Sbjct: 381 IEPRSRNQDPQSLMTYLLARTSLESNQSVNLTVLDLDGKAP-CMPLTRILRQWVRYRVTT 439 Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431 + RRS FR+ R+ IL+G L L+ID +I +IR D PK +++ F L+E Q + I Sbjct: 440 VRRRSQFRLDKALARIHILEGRLRVLLDIDAVIRVIRESDDPKADLMTHFDLSEIQAEDI 499 Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491 L +RLR L +L +++ E LA+K++ + L++ Q +++ I E EI + + Sbjct: 500 LEIRLRQLARLAGIELERE----LADKQETAAYLSALLQDESRLRALIAE--EIQADAKK 553 Query: 492 LGRRRTTFCEVSRA-DKATLQQ--AMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548 G R T E A ++Q A I EP+TV++S +GW+R+ H +D + L FKEG Sbjct: 554 FGDDRRTLLEADTAITNKSIQTIAAAITDEPVTVIVSQKGWLRTRSGHGLDTATLGFKEG 613 Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608 D+L A + D ++LL G+AY++ + GRG G + +D + + Sbjct: 614 DALLQAFEVRSVDTLVLLDHSGRAYSIAVAQIPGGRGDGIPVSSQVDFQPGGVLASVACG 673 Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT---GDHVAVVG 665 LV + G F+ + R GK FL + +E+ +++VT + + + Sbjct: 674 AGDSLWLVAGTGGYGFLTTLENMTGRNRAGKAFLTLDPKERPLPLIRVTDLQAEALCLSS 733 Query: 666 ENRKLLIFSIDQIPEMSRGKGVRL 689 + R LL F + + + +GKGV+L Sbjct: 734 DGRGLL-FPLVDVKNLPKGKGVKL 756 >gi|169823703|ref|YP_001691314.1| DNA gyrase A subunit [Finegoldia magna ATCC 29328] gi|167830508|dbj|BAG07424.1| DNA gyrase A subunit [Finegoldia magna ATCC 29328] Length = 806 Score = 454 bits (1168), Expect = e-125, Method: Compositional matrix adjust. Identities = 269/688 (39%), Positives = 419/688 (60%), Gaps = 35/688 (5%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 N+K L+ +E YL Y++S I RA+PD+RDG KPVHRRII+ M + GL + KS Sbjct: 7 NIKPADLKREMESAYLDYSMSVIVSRALPDVRDGLKPVHRRIIYGMQQQGLFPDRKYSKS 66 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 AR+VGEV+GK HPHGD ++YD++VRLAQ F RYPL+ GQGNFG+IDGD AAA RYTE R Sbjct: 67 ARLVGEVMGKYHPHGDSAIYDAVVRLAQDFNMRYPLVDGQGNFGSIDGDGAAAPRYTELR 126 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 M ++A +L+ +++D VDF+D Y+ E+ EPVV PS+FPNL+ NG+SGIAVGMAT++ HN Sbjct: 127 MDKLALEMLRDINKDTVDFQDNYDGEEQEPVVLPSRFPNLIVNGSSGIAVGMATNMAPHN 186 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 + E +A +A IDNP I+IE+L++YI PDFPTGG I+ E + +Y GRG R+RA Sbjct: 187 LGETIDALIATIDNPNITIEELMKYIKAPDFPTGGNIM-GLEEVKNAYTTGRGKVRLRAE 245 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLF 314 +EE +G + I+VTEIPYQV KS LI+KIA+L+ K+I + D+RDES + +RIV+ Sbjct: 246 ARIEE-SKGRFKIIVTEIPYQVNKSNLIKKIADLVKQKKIEGISDLRDESDRKGMRIVIE 304 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K R +P++++ +++ + M+T F + +N+ + VP+V+ L ++ +L H+ V+ R Sbjct: 305 TK-RDANPNIVLNNLYKYTQMQTTFGI-INLALVNGVPKVLTLKQLIDHYLVHQEIVVRR 362 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE-DKPKPVMVSRFSLTENQVDAILN 433 R+ F + R+ I++GLL A NIDEII IIR D ++ RF +E Q AIL+ Sbjct: 363 RTQFDLNKAKARIHIVEGLLKAIDNIDEIIHIIRTSYDDALEKLMERFGFSEIQAQAILD 422 Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493 +RL+ L+ LE+ ++++E D L A EK+ +LN+ I E+ E++ ++ Sbjct: 423 MRLKRLQGLEKEKLQNEFDELSALIEKLTEILNNRHMLLEIIKDELSEIRTKYADD---- 478 Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD--------LSALHF 545 RRT ++ R D ++E+E + + I+N+G+I+ + + + ++A+ Sbjct: 479 -RRT---KILRDDGDFEDMELLEEEDMFITITNKGYIKRISTDAYKVQHRGGRGVNAMGM 534 Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIV 603 K+GD +K T +L + GK Y+L A + S G I LI ++ ++++ Sbjct: 535 KDGDFIKDMFATTTHQDLLFFTNKGKVYSLKAYEVPEASRTARGSNIINLIQIDADENVT 594 Query: 604 TAFVYDSTCK----LLVVSSKGNAFIVEESEIIANTRK-GKTFLKVSSEEKM---KLVVK 655 D + ++ ++ KG S + N RK G +K +++ KLV K Sbjct: 595 QVLALDKEKENDQFIIFITKKGKVKKTSLS-LYENIRKTGIIAIKFDEGDELIDVKLVEK 653 Query: 656 VTGDHVAVVGENRKLLIFSIDQIPEMSR 683 + V +V + L F++DQ+ ++SR Sbjct: 654 --NEEVIIVTKKGMSLQFNVDQLRDLSR 679 >gi|169836389|ref|ZP_02869577.1| DNA gyrase subunit A [candidate division TM7 single-cell isolate TM7a] Length = 745 Score = 454 bits (1168), Expect = e-125, Method: Compositional matrix adjust. Identities = 271/713 (38%), Positives = 425/713 (59%), Gaps = 48/713 (6%) Query: 5 NISN-SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63 ++SN +N +E+ +KA YL Y++S I RA+PD+RDG KPVHRRI+ +MSE Sbjct: 36 DLSNEANVYIEDEIKAA---------YLDYSMSVIVSRALPDVRDGLKPVHRRILFSMSE 86 Query: 64 MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123 MG+ FKKSARIVG+V+GK HPHGD SVY ++VR+AQ F RY LI G GNFG+IDG Sbjct: 87 MGMSHKTPFKKSARIVGDVLGKYHPHGDSSVYGAMVRMAQDFNMRYELIDGHGNFGSIDG 146 Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183 D AAA RYTEARM ++ E +L + +D +D+R ++E EPVV P+K PNLL NG +GI Sbjct: 147 DEAAAMRYTEARMAKITEELLADIGKDTIDYRKNFDESLDEPVVLPAKLPNLLLNGANGI 206 Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243 AVGMAT+IP HN+ E+ + +ALIDNPEISI++L+ YI GPDFPTGGII ++ I ++Y Sbjct: 207 AVGMATNIPPHNLGEVVDGIVALIDNPEISIDELIGYIKGPDFPTGGII-NGKQGIYDAY 265 Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303 + GRG RV R +E G IVVTE+PYQV KSRLIEKIA+L+ K++ + D+RD Sbjct: 266 KTGRGKLRVAGRVEIETSKTGRKSIVVTELPYQVNKSRLIEKIADLVKQKKLTGISDLRD 325 Query: 304 ESAED-VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362 E+ D +RIV+ K + + +L++ S++ +D++ F + M L + P+V+ L +L+ Sbjct: 326 ETDRDGIRIVIELK-KGEESELILNSLYKFTDLQNTFGVIMLAL-VDNAPRVLNLKQVLQ 383 Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVS 419 ++L HR EV+ RR+ F ++ R IL+G IA NI+E+I IIR + + + ++ Sbjct: 384 KYLEHRFEVITRRTEFELKKARNRAHILEGFKIALDNIEEVIRIIRASKDANVARVELID 443 Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479 +F +E Q AIL++RL+ L LE +I E + L+ EK+ +L+ + + I E Sbjct: 444 KFEFSEIQAKAILDMRLQRLTGLERDKINQEYNELMQLIEKLMGILSDDSKIYGIIKEEA 503 Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------R 531 ++KE D G R T +RA+ + + +I+ E + V ++ +G++ R Sbjct: 504 LKLKE------DFGDERRTEIRNARAEISI--EDLIKDEEVVVTLTEKGYVKRVAIDTYR 555 Query: 532 SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEA 589 S K + ++A + E D +K A D +L+ +T GK +++ + + G+ Sbjct: 556 SQKRGGIGVNATNTVEDDVVKDMYIAKALDTLLIFTTKGKVFSIKVYEIPETGKQARGKL 615 Query: 590 IQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESE--IIANTRK-GKTFLK 643 I +I+L++++ + T ++ L V+ G +V++SE + +N K GK ++ Sbjct: 616 IGNIINLDNDEKVSTIIKVREFEKNRNLFFVTRNG---VVKKSELTLFSNIMKAGKRAIR 672 Query: 644 VSSEEKMKLVVKVTG---DHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSY 692 ++ ++++ + +G D + N + FS + M + GVR Y Sbjct: 673 LNDDDEVMFIGLTSGSGEDEIFAATRNGIAIKFSEKDVRSMGTSAVGVRELHY 725 >gi|302380116|ref|ZP_07268589.1| DNA gyrase, A subunit [Finegoldia magna ACS-171-V-Col3] gi|302312058|gb|EFK94066.1| DNA gyrase, A subunit [Finegoldia magna ACS-171-V-Col3] Length = 806 Score = 454 bits (1167), Expect = e-125, Method: Compositional matrix adjust. Identities = 269/688 (39%), Positives = 419/688 (60%), Gaps = 35/688 (5%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 N+K L+ +E YL Y++S I RA+PD+RDG KPVHRRII+ M + GL + KS Sbjct: 7 NIKPADLKREMESAYLDYSMSVIVSRALPDVRDGLKPVHRRIIYGMQQQGLFPDRKYSKS 66 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 AR+VGEV+GK HPHGD ++YD++VRLAQ F RYPL+ GQGNFG+IDGD AAA RYTE R Sbjct: 67 ARLVGEVMGKYHPHGDSAIYDAVVRLAQDFNMRYPLVDGQGNFGSIDGDGAAAPRYTELR 126 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 M ++A +L+ +++D VDF+D Y+ E+ EPVV PS+FPNL+ NG+SGIAVGMAT++ HN Sbjct: 127 MDKLALEMLRDINKDTVDFQDNYDGEEQEPVVLPSRFPNLIVNGSSGIAVGMATNMAPHN 186 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 + E +A +A IDNP I+IE+L++YI PDFPTGG I+ E + +Y GRG R+RA Sbjct: 187 LGETIDALIATIDNPNITIEELMKYIKAPDFPTGGNIM-GLEEVKNAYTTGRGKVRLRAE 245 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLF 314 +EE +G + I+VTEIPYQV KS LI+KIA+L+ K+I + D+RDES + +RIV+ Sbjct: 246 ARIEE-SKGRFKIIVTEIPYQVNKSNLIKKIADLVKQKKIEGISDLRDESDRKGMRIVIE 304 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K R +P++++ +++ + M+T F + +N+ + VP+V+ L ++ +L H+ V+ R Sbjct: 305 TK-RDANPNIVLNNLYKYTQMQTTFGI-INLALVNGVPKVLTLKQLIDHYLVHQEIVVRR 362 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE-DKPKPVMVSRFSLTENQVDAILN 433 R+ F + R+ I++GLL A NIDEII IIR D ++ RF +E Q AIL+ Sbjct: 363 RTQFDLNKAKARIHIVEGLLKAIDNIDEIIHIIRTSYDDALEKLMERFGFSEIQAQAILD 422 Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493 +RL+ L+ LE+ ++++E D L A EK+ +LN+ I E+ E++ ++ Sbjct: 423 MRLKRLQGLEKEKLQNEFDELSALIEKLTEILNNRHMLLEIIKDELSEIRTKYADD---- 478 Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD--------LSALHF 545 RRT ++ R D ++E+E + + I+N+G+I+ + + + ++A+ Sbjct: 479 -RRT---KILRDDGDFEDMELLEEEDMFITITNKGYIKRISTDAYKVQHRGGRGVNAMGM 534 Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIV 603 K+GD +K T +L + GK Y+L A + S G I LI ++ ++++ Sbjct: 535 KDGDFIKDMFATTTHQDLLFFTNKGKVYSLKAYEVPEASRTARGSNIINLIQIDADENVT 594 Query: 604 TAFVYDSTCK----LLVVSSKGNAFIVEESEIIANTRK-GKTFLKVSSEEKM---KLVVK 655 D + ++ ++ KG S + N RK G +K +++ KLV K Sbjct: 595 QVLALDKEKENDQFIIFITKKGKVKKTSLS-LYENIRKTGIIAIKFDEGDELIDVKLVEK 653 Query: 656 VTGDHVAVVGENRKLLIFSIDQIPEMSR 683 + V +V + L F++DQ+ ++SR Sbjct: 654 --NEEVIIVTKKGMSLQFNVDQLRDLSR 679 >gi|303234487|ref|ZP_07321125.1| DNA gyrase, A subunit [Finegoldia magna BVS033A4] gi|302494442|gb|EFL54210.1| DNA gyrase, A subunit [Finegoldia magna BVS033A4] Length = 806 Score = 453 bits (1165), Expect = e-125, Method: Compositional matrix adjust. Identities = 269/688 (39%), Positives = 419/688 (60%), Gaps = 35/688 (5%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 N+K L+ +E YL Y++S I RA+PD+RDG KPVHRRII+ M + GL + KS Sbjct: 7 NIKPADLKREMESAYLDYSMSVIVSRALPDVRDGLKPVHRRIIYGMQQQGLFPDRKYSKS 66 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 AR+VGEV+GK HPHGD ++YD++VRLAQ F RYPL+ GQGNFG+IDGD AAA RYTE R Sbjct: 67 ARLVGEVMGKYHPHGDIAIYDAVVRLAQDFNMRYPLVDGQGNFGSIDGDGAAAPRYTELR 126 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 M ++A +L+ +++D VDF+D Y+ E+ EPVV PS+FPNL+ NG+SGIAVGMAT++ HN Sbjct: 127 MDKLALEMLRDINKDTVDFQDNYDGEEQEPVVLPSRFPNLIVNGSSGIAVGMATNMAPHN 186 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 + E +A +A IDNP I+IE+L++YI PDFPTGG I+ E + +Y GRG R+RA Sbjct: 187 LGETIDALIATIDNPNITIEELMKYIKAPDFPTGGNIM-GLEEVKNAYTTGRGKVRLRAE 245 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLF 314 +EE +G + I+VTEIPYQV KS LI+KIA+L+ K+I + D+RDES + +RIV+ Sbjct: 246 ARIEE-SKGRFKIIVTEIPYQVNKSNLIKKIADLVKQKKIEGISDLRDESDRKGMRIVIE 304 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K R +P++++ +++ + M+T F + +N+ + VP+V+ L ++ +L H+ V+ R Sbjct: 305 TK-RDANPNIVLNNLYKYTQMQTTFGI-INLALVNGVPKVLTLKQLIDHYLVHQEIVVRR 362 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE-DKPKPVMVSRFSLTENQVDAILN 433 R+ F + R+ I++GLL A NIDEII IIR D ++ RF +E Q AIL+ Sbjct: 363 RTQFDLNKAKARIHIVEGLLKAIDNIDEIIHIIRTSYDDALEKLMERFGFSEIQAQAILD 422 Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493 +RL+ L+ LE+ ++++E D L A EK+ +LN+ I E+ E++ ++ Sbjct: 423 MRLKRLQGLEKEKLQNEFDELSALIEKLTEILNNRHMLLEIIKDELSEIRTKYADD---- 478 Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD--------LSALHF 545 RRT ++ R D ++E+E + + I+N+G+I+ + + + ++A+ Sbjct: 479 -RRT---KILRDDGDFEDMELLEEEDMFITITNKGYIKRISTDAYKVQHRGGRGVNAMGM 534 Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIV 603 K+GD +K T +L + GK Y+L A + S G I LI ++ ++++ Sbjct: 535 KDGDFIKDMFATTTHQDLLFFTNKGKVYSLKAYEVPEASRTARGSNIINLIQIDADENVT 594 Query: 604 TAFVYDSTCK----LLVVSSKGNAFIVEESEIIANTRK-GKTFLKVSSEEKM---KLVVK 655 D + ++ ++ KG S + N RK G +K +++ KLV K Sbjct: 595 QVLALDKEKENDQFIIFITKKGKVKKTSLS-LYENIRKTGIIAIKFDEGDELIDVKLVEK 653 Query: 656 VTGDHVAVVGENRKLLIFSIDQIPEMSR 683 + V +V + L F++DQ+ ++SR Sbjct: 654 --NEEVIIVTKKGMSLQFNVDQLRDLSR 679 >gi|269118650|ref|YP_003306827.1| DNA gyrase subunit alpha [Sebaldella termitidis ATCC 33386] gi|268612528|gb|ACZ06896.1| DNA gyrase, A subunit [Sebaldella termitidis ATCC 33386] Length = 819 Score = 451 bits (1160), Expect = e-124, Method: Compositional matrix adjust. Identities = 250/626 (39%), Positives = 385/626 (61%), Gaps = 38/626 (6%) Query: 18 KAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSAR 77 K + + ++ YL Y++S I RA+PD+RDG KPVHRRI+ AM+E+G+ + +KKSAR Sbjct: 12 KPIYIEDEIKASYLDYSMSVIVSRALPDVRDGLKPVHRRILFAMNELGMTYDKPYKKSAR 71 Query: 78 IVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMT 137 IVGEV+GK HPHGD +VY ++VRLAQ F RY LI+G GN+G+IDGD AAA RYTEARM Sbjct: 72 IVGEVLGKYHPHGDSAVYGAMVRLAQEFNTRYLLINGHGNYGSIDGDGAAAMRYTEARMA 131 Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197 +++ +L+ +D++ +DFR ++E EP V P+K PNLL NG +GIAVGMAT+IP HN Sbjct: 132 KISNELLEDIDKNTIDFRKNFDESLDEPTVLPAKLPNLLLNGATGIAVGMATNIPPHNAG 191 Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257 E+C+ +A+I+NP+I+I++L+ YI GPDFPTGGII R I+E+Y+ GRG RV + Sbjct: 192 EVCDGIVAMIENPDITIDELITYITGPDFPTGGII-NGRSGIIEAYKTGRGKVRVAGKIK 250 Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPK 316 +EE G I+V E+PYQV K+RLIE+IAEL+ K++ + D+RDES D +R+V+ K Sbjct: 251 IEESKNGKESIIVNELPYQVNKARLIERIAELVRNKKLTGISDLRDESDRDGIRVVIELK 310 Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376 R + +L++ S++ +D++ F + L + P+V+ L IL+ +L HR V+ RR+ Sbjct: 311 -RGEESELILNSLYKYTDLQNTFGIIFLAL-VDNAPRVLNLKEILQNYLKHRYSVVTRRT 368 Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-----NEDKPKPVMVSRFSLTENQVDAI 431 F + ++R IL+G IA NIDE+I IIR NE K K +++ F+ +E Q AI Sbjct: 369 KFELDKAEKRAHILEGFKIALDNIDEVIKIIRGSQDGNEAKDK--LMAGFAFSEVQAKAI 426 Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491 L++RL+ L LE +I+ E L+ E++ ++L+ + + I E++++KE FS Sbjct: 427 LDMRLQRLTGLERGKIEEEYKELMLLIEELKAILSDPDKIYAIIKEEVKKIKEDFSDP-- 484 Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSAL 543 RRT E+ A + +I+ E + V ++++G++ R+ K + +SA Sbjct: 485 ---RRT---EIRDARVEIGIEDLIKDEEVVVTLTDKGYVKRTPIDVYRAQKRGGIGVSAT 538 Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDLNH 598 + E D +K A D +L+ +T G K Y +P S + G I +I L Sbjct: 539 NILEDDIIKDMYIAKNLDSLLIFTTKGKVHDIKVYEIPEA---SKQARGRLISNIIKLQE 595 Query: 599 NQ---DIVTAFVYDSTCKLLVVSSKG 621 ++ I+ ++ + V+ KG Sbjct: 596 DEMVSTIIKVREFEKDKDIFFVTRKG 621 >gi|297588051|ref|ZP_06946695.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Finegoldia magna ATCC 53516] gi|297574740|gb|EFH93460.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Finegoldia magna ATCC 53516] Length = 806 Score = 449 bits (1155), Expect = e-124, Method: Compositional matrix adjust. Identities = 264/687 (38%), Positives = 417/687 (60%), Gaps = 33/687 (4%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 N+K L+ +E YL Y++S I RA+PD+RDG KPVHRRII+ M + GL + KS Sbjct: 7 NIKPADLKKEMESAYLDYSMSVIVSRALPDVRDGLKPVHRRIIYGMQQQGLFPDRKYSKS 66 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 AR+VGEV+GK HPHGD ++YD++VRLAQ F RYPL+ GQGNFG+IDGD AAA RYTE R Sbjct: 67 ARLVGEVMGKYHPHGDSAIYDAVVRLAQDFNMRYPLVDGQGNFGSIDGDGAAAPRYTELR 126 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 M +++ +L+ +++D VDF+D Y+ E+ EPVV PS+FPNL+ NG+SGIAVGMAT++ HN Sbjct: 127 MAKLSLEMLRDINKDTVDFQDNYDGEEQEPVVLPSRFPNLIVNGSSGIAVGMATNMAPHN 186 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 + E +A +A IDNP I+IE+L+++I PDFPTGG I+ E + +Y GRG ++RA Sbjct: 187 LGETIDALIASIDNPNITIEELMKHIKAPDFPTGGNIM-GLEEVKNAYTTGRGKVKLRAE 245 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLF 314 +EE +G + I+VTEIPYQV KS LI+KIA+L+ K++ + D+RDES + +RIV+ Sbjct: 246 ARIEE-SKGRYKIIVTEIPYQVNKSNLIKKIADLVKQKKLEGISDLRDESDRKGMRIVIE 304 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K R +P++++ +++ + M+T F + +N+ + VP+V+ L ++ +L H+ V+ R Sbjct: 305 TK-RDANPNIVLNNLYKYTQMQTTFGI-INLALVNGVPKVLTLKQLIDHYLVHQEIVVRR 362 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE-DKPKPVMVSRFSLTENQVDAILN 433 R+ F + R+ I++GLL A NIDEII IIR D ++ RF +E Q AIL+ Sbjct: 363 RTQFDLNKAKARIHIVEGLLKAIDNIDEIIHIIRTSYDDALEKLMQRFGFSEIQAQAILD 422 Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493 +RL+ L+ LE+ ++++E D L A E++ +LN+ I E+ E+K +S Sbjct: 423 MRLKRLQGLEKEKLQNEFDELSALIEQLTEILNNRHMLLEIIKDELTEIKTKYSDD---- 478 Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD--------LSALHF 545 RRT ++ R D ++E+E + + I+N+G+I+ + + + ++A+ Sbjct: 479 -RRT---KILRDDGDFEDMELLEEEDMFITITNKGYIKRISTDAYKVQHRGGRGVNAMGM 534 Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIV 603 K+GD +K T +L + GK Y+L A + S G I LI ++ ++ + Sbjct: 535 KDGDFIKDMFATTTHQDLLFFTNKGKVYSLKAYEVPEASRTARGSNIINLIQIDADESVT 594 Query: 604 TAFVYDSTC---KLLVVSSKGNAFIVEESEIIANTRK-GKTFLKVSSEEKM---KLVVKV 656 D + ++ +K ++ N RK G +K +++ KLV K Sbjct: 595 QVLALDKDKEDDQFIIFITKNGKVKKTSLDLYENIRKTGIIAIKFDEGDELIDVKLVEK- 653 Query: 657 TGDHVAVVGENRKLLIFSIDQIPEMSR 683 ++V +V + L F++DQ+ ++SR Sbjct: 654 -NENVIIVTKKGMSLQFNVDQLRDLSR 679 >gi|164510800|emb|CAK18882.1| topoisomerase II subunit A [Staphylococcus intermedius] Length = 882 Score = 447 bits (1151), Expect = e-123, Method: Compositional matrix adjust. Identities = 282/755 (37%), Positives = 435/755 (57%), Gaps = 46/755 (6%) Query: 26 LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85 + E +L YA+S I RA+PD+RDG KPVHRRI++ ++E G+ +KKSARIVG+V+GK Sbjct: 18 MRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKSARIVGDVMGK 77 Query: 86 LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145 HPHGD S+Y+++VR+AQ F RYPL+ GQGNFG++DGD AAA RYTEARMT++A +L+ Sbjct: 78 YHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEARMTKLALELLR 137 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 +++D +DF D Y+ + EP V PS+FPNLL NG SGIAVGMAT+IP HN++E+ + L+ Sbjct: 138 DINKDTIDFIDNYDGNEREPSVLPSRFPNLLVNGASGIAVGMATNIPPHNMREVIDGVLS 197 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265 L NP+I+I +L+E I GPDFPT G+I+ + I +Y GRG +RA+ +E G G Sbjct: 198 LSHNPDITISELMEDIQGPDFPTAGLIL-GKSGIRRAYETGRGSVIMRAKAEIESRGGGR 256 Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA--EDVRIVLFPKNRSLDPD 323 IVVTEIP+QV K+R+IEKIA+L+ K+I + D+RDE++ VR+V+ + + + Sbjct: 257 ERIVVTEIPFQVNKARMIEKIADLVRDKKIDGITDLRDETSLRTGVRVVIDVR-KDANAS 315 Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383 +++ +++ + ++T F +NM L GR PQ++ L L +L H++EV+ RR+ + ++ Sbjct: 316 VILNNLYKQTPLQTSFGVNMIALVNGR-PQLINLKQALYHYLEHQKEVVRRRTEYNLRKA 374 Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQVDAILNLRLRSLR 440 R IL+GL IA +IDEII IIR D K M SRF+L+E Q AIL++RLR L Sbjct: 375 KDRAHILEGLRIALDHIDEIITIIRESDTDKVAMESLQSRFALSERQAQAILDMRLRRLT 434 Query: 441 KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500 LE +I+ E ++L+A +++++L ++ + E+ E+KE F G R T Sbjct: 435 GLERDKIEQEYNDLIAYIAELEAILADEEKLLELVREELTEIKEKF------GDERRTEI 488 Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DLSALHFKEGDSLK 552 ++ D+ + +I +E I + +S+ +I+ L + + + ++ E D + Sbjct: 489 QLGGIDQLE-DEDLIPEEQIVITLSHNNYIKRLPASTYRAQNRGGRGVQGMNTLEDDFVS 547 Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAFV--- 607 + T D +L + G+ Y L + LS + G I I+L+ ++ I T Sbjct: 548 QLVTTSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPIVNAIELDQDEVISTMIAVKD 607 Query: 608 YDSTCKLLV-VSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGE 666 DS LV V+ KG S R GK +K ++++ V GD ++G Sbjct: 608 LDSEEDFLVFVTKKGLIKRSALSNFNRINRNGKIAIKFRDDDELIAVRLTDGDKHILIGT 667 Query: 667 NRKLLI-FSIDQIPEMSR----GKGVRLQSYKDGGISDVICFKICEG-----LTWIDSAG 716 + LI F + MSR KG+RL +DG +VI + + + + G Sbjct: 668 AQASLIRFKETDVRAMSRIAAGVKGIRL---RDG--DEVIGLDVADDDNKDEILVVTEKG 722 Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751 S D L RGG+G K R+G+ + Sbjct: 723 YGKRTSIEDY--RLSNRGGMGVKTAKLTERNGRLV 755 >gi|307352948|ref|YP_003893999.1| DNA gyrase subunit A [Methanoplanus petrolearius DSM 11571] gi|307156181|gb|ADN35561.1| DNA gyrase, A subunit [Methanoplanus petrolearius DSM 11571] Length = 825 Score = 447 bits (1151), Expect = e-123, Method: Compositional matrix adjust. Identities = 255/615 (41%), Positives = 384/615 (62%), Gaps = 27/615 (4%) Query: 8 NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67 NS+ + V VS+ ++ YL YA+S I RAIPD+RDG KPVHRR ++AM EMG Sbjct: 6 NSSAEQVKRVLPVSIEEEMKSSYLDYAMSVIVGRAIPDVRDGLKPVHRRTLYAMGEMGNY 65 Query: 68 FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAA 127 FKKSARIVGEV+GK HPHGD S+YD+LV++AQPF RY L+ GQGNFG+IDGDSAA Sbjct: 66 HDKPFKKSARIVGEVMGKYHPHGDSSIYDTLVKMAQPFSYRYMLVEGQGNFGSIDGDSAA 125 Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187 A RYTEAR+ V+E +L+ +D++ VDF ++E EP+V P+K PNLL NG+ GIAVGM Sbjct: 126 AMRYTEARLDPVSESLLEDIDKETVDFGPNFDESLQEPLVLPAKIPNLLVNGSDGIAVGM 185 Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247 AT +P HN+ E+C A A+ID+PEIS L+EY+ GPDFPTGG+I+ R I +Y GR Sbjct: 186 ATKMPPHNIGEVCSAVCAMIDDPEISPAGLMEYMPGPDFPTGGVIL-GRSGIASAYTTGR 244 Query: 248 GGFRVRARWCVEE-VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA 306 G R+R +E+ G I+++EIPYQV K+RLIE+IA+L+ K+I + DIRDES Sbjct: 245 GRIRMRGVAEIEDHEGSKKSRIIISEIPYQVNKARLIEQIADLVRDKKIDGISDIRDESD 304 Query: 307 ED-VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365 +D +R+V+ K +S+ P +++ ++ + +E+ F + +N+ + P+V+ L I++E+L Sbjct: 305 KDGIRVVIELK-KSIVPMVVLNQLYKHTPLESTFGV-INLAIVDNQPKVLTLKEIIQEFL 362 Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFS 422 HR+ V++RR+ F ++ + R+ IL+GLL+A NID +IA IR + ++ F Sbjct: 363 KHRKSVIYRRTIFELKKAEDRLHILRGLLLALDNIDAVIATIRGSSTTEEASQKLIENFG 422 Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482 L E Q DAIL ++LR L LE+ +I E D LL E E++ +++ + +I E E+ Sbjct: 423 LDEIQADAILKMQLRRLAALEQQKIIDERDGLLKEVERLKLIISDEGHIFAEIKKETLEI 482 Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD--- 539 E +S RR +VS DK L IE + + V +++ +I+S+ + Sbjct: 483 SEKYSDE----RRTKISHDVSDLDKEDL----IENKQVLVSLTSHNYIKSMPLDTYKGQH 534 Query: 540 -----LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQL 592 + + K+ D +K A T D +L ++ G+ Y L ++ + + G+AI Sbjct: 535 RGGRGIIGMSTKDEDFVKSVFVASTHDYLLCFTSSGRVYWLKVYDIPEATRQSRGKAIVN 594 Query: 593 LIDLNHNQDIVTAFV 607 L++L +++ VTA + Sbjct: 595 LLELG-DEEKVTAVI 608 >gi|310777812|ref|YP_003966145.1| DNA gyrase subunit A [Ilyobacter polytropus DSM 2926] gi|309747135|gb|ADO81797.1| DNA gyrase subunit A [Ilyobacter polytropus DSM 2926] Length = 819 Score = 447 bits (1149), Expect = e-123, Method: Compositional matrix adjust. Identities = 263/711 (36%), Positives = 417/711 (58%), Gaps = 33/711 (4%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 N+ + +++ YL Y++S I RA+PD+RDG KPVHRRI+ AMSEMG+ FKKS Sbjct: 3 NINVRYIEEEMKQSYLDYSMSVIVSRALPDVRDGLKPVHRRILFAMSEMGMTHDKPFKKS 62 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 ARIVGEV+GK HPHGD +VY+++VR+AQ F RY LI G GNFG+IDGDSAAA RYTEAR Sbjct: 63 ARIVGEVLGKYHPHGDSAVYNTMVRMAQDFNFRYQLIDGHGNFGSIDGDSAAAMRYTEAR 122 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 M ++ +L +D++ +D+R +++ EP V P+K PNLL NG +GIAVGMAT+IP HN Sbjct: 123 MAKITSELLVDIDKNTIDYRKNFDDSLDEPQVLPAKLPNLLLNGATGIAVGMATNIPPHN 182 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 + E+ + LALI+N EI+ E+L+EY+ GPDFPTGGII + + I E+Y GRG RVR + Sbjct: 183 LGELLDGVLALIENKEITPEELMEYVTGPDFPTGGII-DGTKGIYEAYTTGRGRVRVRGK 241 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA--EDVRIVL 313 +EE+ G I++TEIP+QV K+RLIEKIAEL+ K+I + D+RDES+ E +RIV+ Sbjct: 242 VDIEELKNGKSNIIITEIPFQVNKARLIEKIAELVKEKKITGITDLRDESSAREGMRIVV 301 Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373 K R +P++++ I+ ++++ F + + L + +P+V+ L IL ++ HR +V+ Sbjct: 302 ELK-RDEEPEIVLNKIYKYTELQNTFGIILLAL-VDNMPKVLNLKEILSHYINHRFDVIT 359 Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDA 430 RR+ + ++ + R IL+G +A NID II IIR + + ++ ++S ++ Q + Sbjct: 360 RRTKYDLEKSENRAHILEGFRVALENIDRIIEIIRGSKDGNTAREHLIEKYSFSDIQARS 419 Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490 IL+++L+ L LE ++++E L+ +++ +L++ ++ ++ I + E+KE +S Sbjct: 420 ILDMKLQRLTGLEREKVENEYTALMEHIKELKDILSNDQRVYDIIKEDCEELKEKYSDE- 478 Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSVDLSA 542 R T E R D + +I+ E + V ++N+G+++ + K +S Sbjct: 479 -----RRTQIEEERLDINI--EDLIKDEKVIVTLTNKGYVKRMNLDKYKAQKRGGKGVST 531 Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQ 600 + EGD L+ A D +++ + GK Y L + S + G+ I LI+L N+ Sbjct: 532 QNTVEGDFLENMYTASNLDTLMIFTDTGKVYNLKVYEIPEFSKQSRGKLIANLINLQENE 591 Query: 601 ---DIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV--VK 655 I+ + T LL V+ +G SE R G +K+ + + V V+ Sbjct: 592 KVKSIIKTREFSDTQDLLFVTKEGLVKKTVLSEFKNLNRSGLRAIKLKDGDDLIFVGLVE 651 Query: 656 VTGDHVAVVGENRKLLIFSIDQIPEMSRGK-GVR-LQSYKDGGISDVICFK 704 D V + +N + F + M R GVR + KD + + K Sbjct: 652 SPNDQVFIATKNGYSIKFPHENARNMGRATIGVRGINLRKDDDVVSAVIIK 702 >gi|56961789|ref|YP_173511.1| DNA gyrase subunit A [Bacillus clausii KSM-K16] gi|56908023|dbj|BAD62550.1| DNA gyrase subunit A [Bacillus clausii KSM-K16] Length = 830 Score = 446 bits (1148), Expect = e-123, Method: Compositional matrix adjust. Identities = 269/702 (38%), Positives = 412/702 (58%), Gaps = 57/702 (8%) Query: 26 LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85 ++E ++ YA+S I RA+PD+RDG KPVHRRI++AM E+G+ +KKSARIVGEV+GK Sbjct: 18 MKESFIDYAMSVIVSRALPDVRDGMKPVHRRILYAMFELGMTPDKPYKKSARIVGEVLGK 77 Query: 86 LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145 HPHGD SVYD++VR+AQ F RY L++G GNFG+IDGDSAAA RYTE++M++++ +++ Sbjct: 78 YHPHGDTSVYDAMVRMAQDFSYRYMLVNGHGNFGSIDGDSAAAMRYTESKMSKISMELVR 137 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 +++D VDF D Y+ + EP V PS+FPNLL NGTSGIAVGMAT+IP H + E+ + LA Sbjct: 138 DLNKDTVDFIDNYDGTEREPKVMPSRFPNLLVNGTSGIAVGMATNIPPHQLGEVIDGVLA 197 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265 L NP+ISI +L+EYI GPDFPTGG I+ R I ++Y GRG VRA+ + E +G Sbjct: 198 LAKNPDISIPELMEYIPGPDFPTGGEIL-GRSGIRKAYSTGRGSITVRAKTEIVE-NKGK 255 Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325 I+VTE+PYQV K+RLIEKIAEL+ K+I + ++RD S + ++ R +P+++ Sbjct: 256 QSIIVTELPYQVNKARLIEKIAELVRDKKIDGITELRDSSDRNGMNIVIDVRRDANPNVI 315 Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385 + ++F + ++T F +NM L GR P+V+ L L+++LAH+ EV+ RR+ F + + Sbjct: 316 LNNLFKQTALQTSFGINMLALVNGR-PEVLNLKQTLEQYLAHQVEVIRRRTQFDLNKAEA 374 Query: 386 RVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVDAILNLRLRSLRKL 442 R IL+GL IA +IDEIIA+IR D + ++ RF L+ +Q AIL++RL+ L L Sbjct: 375 RAHILEGLRIALDHIDEIIALIRGSDTAEIARNGLIERFELSYDQAQAILDMRLQRLTGL 434 Query: 443 EEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEV 502 E +++ E ++LA ++ ++L S ++ + I EI +KE F+ RRT + Sbjct: 435 ERDKLEQEYKDVLARIAELRAILASDEKVIDVIQEEILAIKEKFNDE-----RRTV---I 486 Query: 503 SRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSVDLSALHFKEGDSLKIA 554 S +++ + +I ++ I + I++ G+I+ L K + + + D ++ Sbjct: 487 SASEEHLEDEDLIPRQNIVITITHNGYIKRLPISTYRAQKRGGKGVQGMGTNDDDFVQHL 546 Query: 555 LHAHTTDRILLLSTDGKAYTL---------------PAGNLLSGRGHGEAIQLLIDLNHN 599 +T +L+ + GKAY L PA NLL GE I +I + Sbjct: 547 FTTNTHHTVLVFTNKGKAYRLKGYEIPELGRTAKGIPAINLLP-FDPGETISTVIPIE-- 603 Query: 600 QDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF-LKVSSEEKMKLVVKVTG 658 +D L V+ G A + S AN RKG F + + + + V G Sbjct: 604 -------CFDDDSYLFFVTEHGIAKRTKLSA-FANIRKGGLFAINLREGDSLHGVRLTDG 655 Query: 659 DHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDV 700 + ++G + + I + PE VRL GG+ + Sbjct: 656 NREVMIGTKQGMAI----RFPETD----VRLMGRTAGGVKGI 689 >gi|255094678|ref|ZP_05324156.1| DNA gyrase subunit A [Clostridium difficile CIP 107932] gi|255316432|ref|ZP_05358015.1| DNA gyrase subunit A [Clostridium difficile QCD-76w55] gi|255519092|ref|ZP_05386768.1| DNA gyrase subunit A [Clostridium difficile QCD-97b34] gi|260681775|ref|YP_003213060.1| DNA gyrase subunit A [Clostridium difficile CD196] gi|260207938|emb|CBA60051.1| DNA gyrase subunit A [Clostridium difficile CD196] Length = 808 Score = 446 bits (1146), Expect = e-123, Method: Compositional matrix adjust. Identities = 249/628 (39%), Positives = 396/628 (63%), Gaps = 30/628 (4%) Query: 13 VEENVKAVSLRFA--LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70 +EEN K + + A +++ Y+ Y++S I RA+PD+RDG KPVHRRI+++MSE+ L Sbjct: 1 MEENNKILPIEIAEEMKKSYIDYSMSVIAGRALPDVRDGLKPVHRRILYSMSELNLTPDK 60 Query: 71 AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130 ++KSARIVG+V+GK HPHGD +VY ++VR+AQ F R L+ G GNFG++DGDS AA R Sbjct: 61 PYRKSARIVGDVLGKYHPHGDTAVYYAMVRMAQDFSTRALLVDGHGNFGSVDGDSPAAMR 120 Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190 YTEA+M++++ +L+ ++++ VDF+ ++E EP V P+++PNLL NG++GIAVGMATS Sbjct: 121 YTEAKMSKLSLELLRDIEKETVDFKPNFDESLKEPSVLPARYPNLLVNGSNGIAVGMATS 180 Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250 IP HN+ E+ +A + LIDNPE S++ L++++ GPDFPT II+ +ESI E+YR GRG Sbjct: 181 IPPHNLAEVIDATVYLIDNPECSVDDLIKFVQGPDFPTAAIIM-GKESIAEAYRTGRGKV 239 Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-V 309 +VR+R +EE+ +G I+VTEIPYQV K++L+E+IAEL+ KRI + D+RDES + + Sbjct: 240 KVRSRAFIEELPKGKQQIIVTEIPYQVNKAKLVERIAELVKEKRIEGISDLRDESNRNGM 299 Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369 RIV+ K R + ++++ +++ S ME F + M L G+ P+V+ L IL ++ H+ Sbjct: 300 RIVIELK-RDANANIVLNNLYKHSQMEDTFSIIMLALVDGQ-PRVLNLKQILYHYIKHQE 357 Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTEN 426 +V+ RR+ F + + R IL+GL IA NID +I++IR + K ++ +F LTE Sbjct: 358 DVVTRRTKFELNKAEARAHILEGLKIALDNIDAVISLIRASKTGQEAKIGLIEKFKLTEI 417 Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486 Q AIL++RL+ L LE +I++E ++L+ + ++ +L + N I EI +KE + Sbjct: 418 QAQAILDMRLQRLTGLERDKIEAEYEDLIKKINRLKEILADERLLLNVIKNEITIIKENY 477 Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD------- 539 S RRT E+ A+ + +I E I + +++ G+I+ L S + Sbjct: 478 SDE-----RRT---EIRHAEGEIDMRDLISDEEIAITLTHFGYIKRLPSDTYKSQKRGGR 529 Query: 540 -LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDL 596 +SAL +E D ++ + T R+L + G+ + L A + G+ G AI L+ L Sbjct: 530 GISALTTREEDFVRHLVTTTTHSRLLFFTNKGRVFKLNAYEIPEGKRQAKGTAIVNLLQL 589 Query: 597 NHNQDIVTAFVYDSTCK---LLVVSSKG 621 + ++ I T D + LL+ + KG Sbjct: 590 SADEKIATLIPIDGNDENEYLLLATKKG 617 >gi|302340766|ref|YP_003805972.1| DNA gyrase subunit alpha [Spirochaeta smaragdinae DSM 11293] gi|301637951|gb|ADK83378.1| DNA gyrase, A subunit [Spirochaeta smaragdinae DSM 11293] Length = 818 Score = 446 bits (1146), Expect = e-122, Method: Compositional matrix adjust. Identities = 278/763 (36%), Positives = 436/763 (57%), Gaps = 40/763 (5%) Query: 15 ENVKAVSLRFALEER----YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70 E +K + ++EE YL YA+S I RA+PD+RDG KPVHRRI+++M+EMGL Sbjct: 2 EEIKGQVIPISIEEEVRGSYLNYAMSVIVSRALPDVRDGLKPVHRRILYSMNEMGLRSDR 61 Query: 71 AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130 AFKK RIVG+V+GK HPHGDQS+YD+LVRLAQ F RYP++ QGNFG++DGD AA R Sbjct: 62 AFKKCGRIVGDVLGKYHPHGDQSIYDALVRLAQDFSMRYPVVRPQGNFGSVDGDPPAAMR 121 Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190 YTEA+M +VAE +L+ + ++ VD+ Y++ EP+V P FP LL NG SGIAVGMAT+ Sbjct: 122 YTEAKMDRVAEEMLKDIKKETVDYGPNYDDSMQEPLVLPGAFPYLLTNGASGIAVGMATN 181 Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250 + HN++E+C A +A I++ ISI+ L++YI GPDFPTGGII R I +++R G+G Sbjct: 182 MAPHNLREVCAAIVAYINDANISIDDLMKYIKGPDFPTGGIIF-GRRGIKQAFRTGKGKI 240 Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-V 309 VR+++ +E G I+VTEIPY V K+ LI KIA+L+ KRI + D+RDES D + Sbjct: 241 TVRSKFVIETTKSGKDRIIVTEIPYAVNKANLIVKIADLVKEKRIDGISDLRDESDRDGM 300 Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369 RIV+ K R P +++ +F + ++ F + N+ + +P+ + L ++ ++ HR Sbjct: 301 RIVIELK-RGTVPKVVLNQLFSHTALQQNFNVT-NLALVDGMPKQLNLKELVHYFVRHRV 358 Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTEN 426 EV+ RR+ + ++ + R IL+GL IA NIDE++ II++ ++ + ++ RF L+E Sbjct: 359 EVVTRRTRYDLKKAEERAHILEGLKIALDNIDEVVQIIKSSNDVNQARERLMERFKLSER 418 Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486 Q AIL++RL+ L LE +I+ EL +LA + LL+S ++ + E E+ + + Sbjct: 419 QSQAILDMRLQKLTSLETKKIEEELREVLALIAYLKDLLSSEQKILGVVRDETEEIAQKY 478 Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV-------- 538 G R T ++ ++ +I+KE + V++SN+G+I+ + S Sbjct: 479 ------GDDRKTEIVADEVEEINIED-LIQKEDMVVLVSNKGFIKRVPVSSYRNQGRGGK 531 Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDL 596 S+ D +K A T D IL ++ +GKAY + + G G I+ L+++ Sbjct: 532 GSSSAKLINEDFIKHLFIASTHDYILFVTNEGKAYWMKVHEIPEGSRASRGTHIKALLEI 591 Query: 597 NHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653 + N+DI T + L + +++G V+ S+ +G +K+ + + + Sbjct: 592 SANEDITTIVSLQEFSEEHYLFMATARGIVKKVKTSDFRNARTRGIIAIKLDNGDTLITA 651 Query: 654 VKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK----GVRLQSYKDGGISDVICFKICEG 708 V GD + +V N L F DQ+ M R G+RLQS D ++ ++ + E Sbjct: 652 VLTRGDSEIVIVSRNGNALRFHEDQVRAMGRASRGVTGIRLQS--DDELAGILRVEDNEK 709 Query: 709 LTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751 + + G R E D G RG G + K RSG+ + Sbjct: 710 MLLLSENGLG-KRVEYDHFSLHG-RGTRGQIAYKTSERSGEIV 750 >gi|164686441|ref|ZP_02210469.1| hypothetical protein CLOBAR_00006 [Clostridium bartlettii DSM 16795] gi|164604452|gb|EDQ97917.1| hypothetical protein CLOBAR_00006 [Clostridium bartlettii DSM 16795] Length = 811 Score = 445 bits (1145), Expect = e-122, Method: Compositional matrix adjust. Identities = 251/629 (39%), Positives = 397/629 (63%), Gaps = 31/629 (4%) Query: 13 VEENVKAVSLRFA--LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70 +EEN + + + +++ Y+ YA+S I RA+PD+RDG KPVHRRI+++M+E+ L Sbjct: 3 MEENNRIIPAEISKEMKDSYIDYAMSVIAGRALPDVRDGLKPVHRRILYSMNELNLTPDK 62 Query: 71 AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130 ++KSARIVG+V+GK HPHGD +VY ++VR+AQ F R L+ G GNFG++DGDS AA R Sbjct: 63 PYRKSARIVGDVLGKYHPHGDSAVYLAMVRMAQDFSTRGLLVDGHGNFGSVDGDSPAAMR 122 Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190 YTEA+M++++ +L+ +D++ VDF ++E EP V P++FPNLL NG++GIAVGMATS Sbjct: 123 YTEAKMSKLSLELLRDIDKETVDFGPNFDESLKEPTVLPARFPNLLVNGSNGIAVGMATS 182 Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250 IP HN+ E +A + LIDNP+ +++L++YI GPDFPTG II+ ++SI E+YR GRG Sbjct: 183 IPPHNLGETIDATVHLIDNPDCDVDELMQYIQGPDFPTGAIIM-GKDSIAEAYRTGRGKV 241 Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-V 309 +VR+R +EE+ +G IVVTEIPYQV K++L+E+IAEL+ KRI + D+RDES + + Sbjct: 242 KVRSRAEIEELPKGKQQIVVTEIPYQVNKAKLVERIAELVKDKRIEGISDLRDESNRNGM 301 Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369 RIV+ K R ++ ++++ +++ S +E F + M L G VP+++ L IL ++ H++ Sbjct: 302 RIVIELK-RDVNANIVLNNLYKHSQLEDTFSIIMLSLVNG-VPRILNLKQILHYYVEHQK 359 Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTEN 426 +V+ RR+ F + R IL+GL IA IDE+I++IR N K ++ +F L+E Sbjct: 360 DVVTRRTKFELNKAQARAHILEGLRIALDYIDEVISLIRSSANTQIAKSGLMDKFKLSEI 419 Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486 Q AIL++RL+ L LE ++++E + L+ + E ++S+L + I EI E+K+ + Sbjct: 420 QAQAILDMRLQKLTGLEREKVEAEYNELMKKIEYLESILADEQLLLGVIKDEILEIKKKY 479 Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD------- 539 S + RRT E+ A+ + +I+ E IT+ +++ G+I+ L + Sbjct: 480 SDA-----RRT---EIRHAEGEIDIKDLIDDEEITITLTHFGYIKRLPLDTYKSQRRGGR 531 Query: 540 -LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDL 596 +SAL +E D +K + T +R+L + G+ + L A + G+ G AI L+ L Sbjct: 532 GISALTVREEDFVKHLITTRTHNRLLFFTNRGRVFRLDAFEVPEGKRQAKGTAIVNLLQL 591 Query: 597 NHNQDIVTAFVYDSTCK----LLVVSSKG 621 N+ I T D LL+ + KG Sbjct: 592 GPNEKIATLIEVDGRADDDSYLLLATKKG 620 >gi|255657643|ref|ZP_05403052.1| DNA gyrase subunit A [Clostridium difficile QCD-23m63] gi|296880072|ref|ZP_06904041.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Clostridium difficile NAP07] gi|296428939|gb|EFH14817.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Clostridium difficile NAP07] Length = 808 Score = 445 bits (1145), Expect = e-122, Method: Compositional matrix adjust. Identities = 249/628 (39%), Positives = 397/628 (63%), Gaps = 30/628 (4%) Query: 13 VEENVKAVSLRFA--LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70 +EEN K + + A +++ Y+ Y++S I RA+PD+RDG KPVHRRI+++MSE+ L Sbjct: 1 MEENNKILPIEIAEEMKKSYIDYSMSVIAGRALPDVRDGLKPVHRRILYSMSELNLTPDK 60 Query: 71 AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130 ++KSARIVG+V+GK HPHGD +VY ++VR+AQ F R L+ G GNFG++DGDS AA R Sbjct: 61 PYRKSARIVGDVLGKYHPHGDTAVYYAMVRMAQDFSTRALLVDGHGNFGSVDGDSPAAMR 120 Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190 YTEA+M++++ +L+ ++++ VDF+ ++E EP V P+++PNLL NG++GIAVGMATS Sbjct: 121 YTEAKMSKLSLELLRDIEKETVDFKPNFDESLKEPSVLPARYPNLLVNGSNGIAVGMATS 180 Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250 IP HN+ E+ +A + LIDNPE S++ L++++ GPDFPT II+ +ESI E+YR GRG Sbjct: 181 IPPHNLAEVIDATVYLIDNPECSVDDLIKFVQGPDFPTAAIIM-GKESIAEAYRTGRGKV 239 Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-V 309 +VR+R +EE+ +G I+VTEIPYQV K++L+E+IAEL+ KRI + D+RDES + + Sbjct: 240 KVRSRAFIEELPKGKQQIIVTEIPYQVNKAKLVERIAELVKEKRIEGISDLRDESNRNGM 299 Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369 RIV+ K R + ++++ +++ S ME F + M L G+ P+V+ L IL ++ H+ Sbjct: 300 RIVIELK-RDANANIVLNNLYKHSQMEDTFSIIMLALVDGQ-PRVLNLKQILYHYIKHQE 357 Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTEN 426 +V+ RR+ F + + R IL+GL IA NID +I++IR + K ++ +F+LTE Sbjct: 358 DVVTRRTKFELNKAEARAHILEGLKIALDNIDAVISLIRASKTGQEAKLGLIEKFNLTEI 417 Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486 Q AIL++RL+ L LE +I++E ++L+ + ++ +L + N I EI +KE + Sbjct: 418 QAQAILDMRLQRLTGLERDKIEAEYEDLIKKINRLKEILADERLLLNVIKDEITIIKENY 477 Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD------- 539 S RRT E+ A+ + +I E I + +++ G+I+ L S + Sbjct: 478 SDE-----RRT---EIRHAEGEIDMRDLISDEEIAITLTHFGYIKRLPSDTYKSQKRGGR 529 Query: 540 -LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDL 596 +SAL +E D ++ + T R+L + G+ + L A + G+ G AI L+ L Sbjct: 530 GISALTTREEDFVRHLVTTTTHSRLLFFTNKGRVFKLNAYEIPEGKRQAKGTAIVNLLQL 589 Query: 597 NHNQDIVTAFVYDSTCK---LLVVSSKG 621 + ++ I T D + LL+ + KG Sbjct: 590 SADEKIATLIPIDGNDENEYLLLATKKG 617 >gi|218672669|ref|ZP_03522338.1| DNA topoisomerase IV subunit A [Rhizobium etli GR56] Length = 303 Score = 445 bits (1144), Expect = e-122, Method: Compositional matrix adjust. Identities = 213/302 (70%), Positives = 265/302 (87%), Gaps = 1/302 (0%) Query: 22 LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81 L+ ALE+RYLAYALSTI RA+PD+RDG KPVHRRI++AM+EMGL +AF+K A+IVGE Sbjct: 1 LKAALEQRYLAYALSTIMHRALPDVRDGLKPVHRRIVYAMNEMGLRPTSAFRKCAKIVGE 60 Query: 82 VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE 141 V+G HPHGDQS+YD+L RLAQ F QRY L++GQGNFGNIDGDS AA RYTE++MT V+E Sbjct: 61 VMGNYHPHGDQSIYDALARLAQDFSQRYTLVNGQGNFGNIDGDSPAAMRYTESKMTAVSE 120 Query: 142 LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICE 201 L+L+G+D+DAVDFRDTY+E +SEPVV P FPNLLANG+SGIAVGMATSIPSHN E+C+ Sbjct: 121 LLLEGIDQDAVDFRDTYDESNSEPVVLPGAFPNLLANGSSGIAVGMATSIPSHNAHELCD 180 Query: 202 AALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEV 261 AAL LI +P+ ++EKL+E+I GPDFPTGGII++SR+SI+ESYR GRGGFRVRA+W E++ Sbjct: 181 AALHLIKHPDATVEKLVEFIPGPDFPTGGIIIDSRDSIIESYRTGRGGFRVRAKWQTEDL 240 Query: 262 GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN-RSL 320 GRG + IV+TEIP+QVQKSRLIEKIAEL+IA+++PLLEDIRDESAED+R + + +N S+ Sbjct: 241 GRGGYQIVITEIPFQVQKSRLIEKIAELLIARKLPLLEDIRDESAEDIRCLSWCRNLGSV 300 Query: 321 DP 322 DP Sbjct: 301 DP 302 >gi|126697572|ref|YP_001086469.1| DNA gyrase subunit A [Clostridium difficile 630] gi|255308725|ref|ZP_05352896.1| DNA gyrase subunit A [Clostridium difficile ATCC 43255] gi|115249009|emb|CAJ66820.1| DNA gyrase subunit A [Clostridium difficile] Length = 808 Score = 445 bits (1144), Expect = e-122, Method: Compositional matrix adjust. Identities = 249/628 (39%), Positives = 396/628 (63%), Gaps = 30/628 (4%) Query: 13 VEENVKAVSLRFA--LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70 +EEN K + + A +++ Y+ Y++S I RA+PD+RDG KPVHRRI+++MSE+ L Sbjct: 1 MEENNKILPIEIAEEMKKSYIDYSMSVIAGRALPDVRDGLKPVHRRILYSMSELNLTPDK 60 Query: 71 AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130 ++KSARIVG+V+GK HPHGD +VY ++VR+AQ F R L+ G GNFG++DGDS AA R Sbjct: 61 PYRKSARIVGDVLGKYHPHGDTAVYYAMVRMAQDFSTRALLVDGHGNFGSVDGDSPAAMR 120 Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190 YTEA+M++++ +L+ ++++ VDF+ ++E EP V P+++PNLL NG++GIAVGMATS Sbjct: 121 YTEAKMSKLSLELLRDIEKETVDFKPNFDESLKEPSVLPARYPNLLVNGSNGIAVGMATS 180 Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250 IP HN+ E+ +A + LIDNPE S++ L++++ GPDFPT II+ +ESI E+YR GRG Sbjct: 181 IPPHNLAEVIDATVYLIDNPECSVDDLIKFVQGPDFPTAAIIM-GKESIAEAYRTGRGKV 239 Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-V 309 +VR+R +EE+ +G I+VTEIPYQV K++L+E+IAEL+ KRI + D+RDES + + Sbjct: 240 KVRSRAFIEELPKGKQQIIVTEIPYQVNKAKLVERIAELVKEKRIEGISDLRDESNRNGM 299 Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369 RIV+ K R + ++++ +++ S ME F + M L G+ P+V+ L IL ++ H+ Sbjct: 300 RIVIELK-RDANANIVLNNLYKHSQMEDTFSIIMLALVDGQ-PRVLNLKQILYHYIKHQE 357 Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTEN 426 +V+ RR+ F + + R IL+GL IA NID +I++IR + K ++ +F LTE Sbjct: 358 DVVTRRTKFELNKAEARAHILEGLKIALDNIDAVISLIRASKTGQEAKLGLIEKFKLTEI 417 Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486 Q AIL++RL+ L LE +I++E ++L+ + ++ +L + N I EI +KE + Sbjct: 418 QAQAILDMRLQRLTGLERDKIEAEYEDLIKKINRLKEILADERLLLNVIKDEITIIKENY 477 Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD------- 539 S RRT E+ A+ + +I E I + +++ G+I+ L S + Sbjct: 478 SDE-----RRT---EIRHAEGEIDMRDLISDEEIAITLTHFGYIKRLPSDTYKSQKRGGR 529 Query: 540 -LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDL 596 +SAL +E D ++ + T R+L + G+ + L A + G+ G AI L+ L Sbjct: 530 GISALTTREEDFVRHLVTTTTHSRLLFFTNKGRVFKLNAYEIPEGKRQAKGTAIVNLLQL 589 Query: 597 NHNQDIVTAFVYDSTCK---LLVVSSKG 621 + ++ I T D + LL+ + KG Sbjct: 590 SADEKIATLIPIDGNDENEYLLLATKKG 617 >gi|293400050|ref|ZP_06644196.1| DNA gyrase, A subunit [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291306450|gb|EFE47693.1| DNA gyrase, A subunit [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 844 Score = 445 bits (1144), Expect = e-122, Method: Compositional matrix adjust. Identities = 262/691 (37%), Positives = 413/691 (59%), Gaps = 30/691 (4%) Query: 12 LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71 L ++ +K V + + + +L Y++S I +RA+PD+RDG KPVHRRI+HAM+E+G+ Sbjct: 3 LNKDKLKEVDISKEMRKSFLDYSMSVIVDRALPDVRDGLKPVHRRILHAMNELGIVASKP 62 Query: 72 FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131 FKKSARIVGEVIGK HPHGD +VYD++VR+AQ F RY L+ G GNFG++DGD AAA RY Sbjct: 63 FKKSARIVGEVIGKYHPHGDTAVYDAMVRMAQDFSYRYMLVQGHGNFGSMDGDGAAAMRY 122 Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191 TEARM+++A +L+ ++++ VDF Y+ E++EP V P++FPNL+ NG GIAVGMAT+I Sbjct: 123 TEARMSKIAMELLRDINKNTVDFGPNYDGEETEPKVMPARFPNLIVNGAVGIAVGMATNI 182 Query: 192 PSHNVQEICEAALALIDNPEISIEKLLE-YIIGPDFPTGGIIVESRESIVESYRLGRGGF 250 P HN+ E +A A++D+P+I++ +L++ YI GPDFPTGGII+ R I ++Y GRG Sbjct: 183 PPHNLTETIDATFAVMDDPDITVMELMDNYIKGPDFPTGGIIL-GRSGIRQAYETGRGSI 241 Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-V 309 R+++ VEE+G G IVVTEIPYQV K+ LI KIA+L+ K++ + + DES D + Sbjct: 242 ITRSKYHVEEMGNGKNRIVVTEIPYQVNKANLISKIADLVREKQVDGITYLNDESNRDGI 301 Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369 RIV+ + + + +++M +F L+ ++T F +NM L G P+ M + +L+ ++ H+ Sbjct: 302 RIVIELR-KDVQVEVVMNQLFRLTSLQTSFGVNMLALVNG-APKQMGIKEMLQHYVDHQI 359 Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTEN 426 +V+ RR+ F ++ + R IL+GL IA +IDEII +IR N+ + + ++ RF LTE Sbjct: 360 DVVVRRTQFDLKKAEDRAHILEGLRIALDHIDEIIRLIRESQNDAEARSGLMERFKLTEI 419 Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486 Q +AIL +RLR L LE +I++E LL + +L + + I E+ EVK F Sbjct: 420 QANAILEMRLRRLTGLERDKIENEYQELLKTIADLKDILANHSRVIQIIKDELTEVKNRF 479 Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV-------- 538 RRT E+S AD + + +I E + + ++ G+I+ + + Sbjct: 480 GDP-----RRT---EISEADYSMEDEDLIPVEDVVITMTTNGYIKRMPIDTYRTQNRGGR 531 Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS-GR-GHGEAIQLLIDL 596 + + E D +++ T D ++L + GK Y + + S GR G + L++L Sbjct: 532 GVKGMSVNEDDIVELLTTMSTHDYLMLFTNLGKVYRMKGYKIPSAGRTAKGLPVVNLLNL 591 Query: 597 NHNQDIVTAFVYDSTCK---LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653 + + + + + LL V+ G SE + + GK + + ++++ V Sbjct: 592 DKEEKVRALVPVNPESESEYLLFVTQNGLVKRTPMSEFDSIRQNGKIAITLRDDDELMGV 651 Query: 654 VKVTG-DHVAVVGENRKLLIFSIDQIPEMSR 683 + TG D + + G N K + F D I M R Sbjct: 652 KETTGDDEIIIAGSNGKAVRFHEDGIRAMGR 682 >gi|307719918|ref|YP_003875450.1| DNA gyrase subunit A [Spirochaeta thermophila DSM 6192] gi|306533643|gb|ADN03177.1| DNA gyrase subunit A [Spirochaeta thermophila DSM 6192] Length = 809 Score = 444 bits (1143), Expect = e-122, Method: Compositional matrix adjust. Identities = 256/627 (40%), Positives = 380/627 (60%), Gaps = 31/627 (4%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 V V + ++E YL YA+S I RA+PD+RDG KPV RRI++AM EMGL FKKS Sbjct: 7 KVVPVPIEEEIKESYLNYAMSVIVSRALPDVRDGLKPVQRRILYAMYEMGLRHDRPFKKS 66 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 RIVG+V+GK HPHGDQS+YD+LVRLAQ F RYP++ GQGNFG+IDGD AA RYTEA+ Sbjct: 67 GRIVGDVLGKYHPHGDQSIYDALVRLAQEFSMRYPMVIGQGNFGSIDGDPPAAMRYTEAK 126 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 + ++AE +L+ ++++ VDF Y+E EP V P+ P LL NG SGIAVGMAT+IP HN Sbjct: 127 LHKIAEEMLRDINKETVDFVPNYDESLKEPAVLPAAVPYLLINGASGIAVGMATNIPPHN 186 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 + E+ A A+IDNPEI + LL Y+ GPDFPTGGII ++ I +Y G+GG VRAR Sbjct: 187 LGEVSRAIAAVIDNPEIPPKDLLRYVKGPDFPTGGIIF-GKKGIRSAYLTGKGGVVVRAR 245 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315 +E + G IVVTEIPY V KS L+E++A L+ K+I + +IRDES + ++F Sbjct: 246 LSLETLRSGREAIVVTEIPYAVNKSSLLERVASLVRDKKIEGISEIRDESDRNGLRIVFE 305 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 R + P +++ +F ++ ++T F +N L G+ PQ + L I++ +++HR+EV+ RR Sbjct: 306 LKRGVIPKVVINRLFSMTPLQTTFHVNALALVGGK-PQTLTLKEIIQHFISHRKEVVTRR 364 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAII---RNEDKPKPVMVSRFSLTENQVDAIL 432 + + ++ + R IL+GL IA NIDE+IAII R D + ++ RF L+E Q AIL Sbjct: 365 AQYDLRKAEERAHILEGLKIALDNIDEVIAIIKKSRTVDSARNNLMRRFGLSERQAQAIL 424 Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492 ++RL+ L LE +I EL+ L E++ LL S ++ + E E+ + + Sbjct: 425 DMRLQKLTSLETRKIIEELEATLKLIEELKELLGSERKILEVVKNETLEL------AKEY 478 Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL-------KSHSVDLSALHF 545 G R T A+ ++ +I+KE + V++S G I+ + + Sbjct: 479 GDERRTEIVAEEAEDLDIED-LIQKEDMVVLVSRDGLIKRMPVSAYRRQGRGGKGLMGGK 537 Query: 546 KEGDSLKIALH-AHTTDRILLLSTDGKAYTL-----PAGNLLSGRGHGEAIQLLIDLNHN 599 GD + L A T D IL LS +GKAY L P G+ +S G++I+ L+ L+ + Sbjct: 538 LSGDDVVSHLFVASTHDYILFLSNEGKAYYLKVHEIPEGSRVS---QGKSIRSLVQLSPD 594 Query: 600 QD---IVTAFVYDSTCKLLVVSSKGNA 623 + +V+ ++ ++ ++++KG A Sbjct: 595 EQVSAVVSVETFEEEREVFMITAKGLA 621 >gi|241889930|ref|ZP_04777228.1| DNA gyrase, A subunit [Gemella haemolysans ATCC 10379] gi|241863552|gb|EER67936.1| DNA gyrase, A subunit [Gemella haemolysans ATCC 10379] Length = 815 Score = 444 bits (1143), Expect = e-122, Method: Compositional matrix adjust. Identities = 277/777 (35%), Positives = 453/777 (58%), Gaps = 62/777 (7%) Query: 13 VEENVKAVSLR---FALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69 +E+N ++LR +E +L Y++S I RA+PD+RDG KPVHRRI++A +++GL + Sbjct: 1 MEDNKNNITLRNITTEIENSFLDYSMSVIVSRALPDVRDGLKPVHRRILYAFNDLGLTYD 60 Query: 70 AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129 +KKSA +VGEV+ K HPHGD + Y ++VRLAQ F RYPL+ GQGNFG+IDGDSAAA Sbjct: 61 KPYKKSAFVVGEVMAKYHPHGDSATYGTIVRLAQDFNSRYPLVDGQGNFGSIDGDSAAAM 120 Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189 RYTEARM+++A +L+ +++D VD +D Y+ EP V P++ PNLL NG+SGIAVGMAT Sbjct: 121 RYTEARMSKIASELLRDINKDTVDMQDNYDGTKQEPKVLPARIPNLLVNGSSGIAVGMAT 180 Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249 +IP HN+ E+ + +AL DN EI+I +L+ I GPDFPTG ++ R IV++Y GRG Sbjct: 181 NIPPHNLGEVIDGVIALADNSEITIAELMSKIKGPDFPTGSFLL-GRSGIVKAYTTGRGS 239 Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-ED 308 +R + +E++ G I++TEIPYQV K++L+EKIAEL K+I + D+RDES + Sbjct: 240 VIMRGKTEIEQMKNGKERIIITEIPYQVNKAKLVEKIAELARDKKIEGVTDLRDESNLKG 299 Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368 +RIV+ + R ++ ++++ +++ L+ +++ F +NM L G VP+++ L +L +L H+ Sbjct: 300 IRIVIELR-RDVNSNVILNNLYKLTPLQSSFGVNMIALVNG-VPKLLNLKEVLYYYLEHQ 357 Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTE 425 +EV+ RR+ F ++ R IL+GL IA NID II++IR ++ K ++ +F LTE Sbjct: 358 KEVVVRRTKFDLKKAQARAHILEGLRIALDNIDRIISLIRGSQTAEEAKAGLIDQFGLTE 417 Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485 Q AIL++RL+ L LE +I+ E L+ ++ +L ++ + E+ EVKE Sbjct: 418 IQAQAILDMRLQRLTGLERDKIEEEYSKLMELIADLEDILAKPERVIQIVKDELLEVKEK 477 Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD------ 539 F +RR+ E + D+ + +IEKE I + +S+ +I+ L + + Sbjct: 478 FGD-----KRRSIIIE-GQVDQIE-NEDLIEKEQIIITLSHNQYIKRLAASTYKSQGRGG 530 Query: 540 --LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAG--NLLSGRGHGEAIQLLID 595 ++ + + D++ L T D IL + GK YTL N +S + G I L++ Sbjct: 531 RGVNGMTTNDEDNVAYMLSCSTHDHILFFTDKGKVYTLKGYEINQMSRQSKGIPIINLLE 590 Query: 596 LNH----NQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEI---IANTRKGKTFLKVSSEE 648 + N I + + + L+ + G I+++S++ + +KGK LK+ ++ Sbjct: 591 IEKEEKVNSIIAISDLQEEGTNLIFSTKYG---IIKKSKLGDYASILKKGKIALKLDEDD 647 Query: 649 KMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEM---SRG-KGVRLQSYKDGGISDVICF 703 + V ++T D + +V N + + + +++ M SRG KG+ L D + Sbjct: 648 SLIDVQRITDDQDIMIVTANGQAIRINAEKVRTMGRVSRGVKGITLSP------DDYVV- 700 Query: 704 KICEGLTWIDSAGRSYNRSENDLLGWLGK--------RGGVGSLVPKGFPRSGKFLS 752 G+ +D + + +EN +G + K RGG G V K ++GK ++ Sbjct: 701 ----GMEVVDESKKILTVTENG-IGKISKSTEFNVINRGGKGVKVAKVTKKTGKIVA 752 >gi|323463207|gb|ADX75360.1| DNA gyrase, A subunit [Staphylococcus pseudintermedius ED99] Length = 878 Score = 444 bits (1143), Expect = e-122, Method: Compositional matrix adjust. Identities = 280/755 (37%), Positives = 436/755 (57%), Gaps = 46/755 (6%) Query: 26 LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85 + E +L YA+S I RA+PD+RDG KPVHRRI++ ++E G+ +KKSARIVG+V+GK Sbjct: 18 MRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKSARIVGDVMGK 77 Query: 86 LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145 HPHGD S+Y+++VR+AQ F RYPL+ GQGNFG++DGD AAA RYTEARMT++A +L+ Sbjct: 78 YHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEARMTKLALELLR 137 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 +++D +DF D Y+ + EP V PS+FPNLL NG SGIAVGMAT+IP HN++E+ + L+ Sbjct: 138 DINKDTIDFIDNYDGNEREPSVLPSRFPNLLVNGASGIAVGMATNIPPHNMREVIDGVLS 197 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265 L NP+I+I +L+E I GPDFPT G+I+ + I +Y GRG +RA+ +E G G Sbjct: 198 LSHNPDITISELMEDIQGPDFPTAGLIL-GKSGIRRAYETGRGSVIMRAKAEIESRGGGR 256 Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA--EDVRIVLFPKNRSLDPD 323 IVVTEIP+QV K+R+IEKIAEL+ K+I + D+RDE++ VR+V+ + + + Sbjct: 257 DRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRVVIDVR-KDANAS 315 Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383 +++ +++ + ++T F +NM L GR PQ++ L L +L H++EV+ RR+ + ++ Sbjct: 316 VILNNLYKQTPLQTSFGVNMIALVNGR-PQLINLKQALYHYLEHQKEVVRRRTEYNLRKA 374 Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQVDAILNLRLRSLR 440 R IL+GL IA +IDEII IIR + K M SRF+L+E Q AIL++RLR L Sbjct: 375 KDRAHILEGLRIALDHIDEIITIIRESETDKVAMESLQSRFALSERQAQAILDMRLRRLT 434 Query: 441 KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500 LE +I+ E ++L+A +++++L ++ + E+ E+KE F G R T Sbjct: 435 GLERDKIEQEYNDLIAYIAELEAILADEEKLLELVREELTEIKEKF------GDDRRTEI 488 Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DLSALHFKEGDSLK 552 ++ D+ + +I +E I + +S+ +I+ L + + + ++ + D + Sbjct: 489 QLGGIDQLE-DEDLIPEEQIVITLSHNNYIKRLPASTYRAQNRGGRGVQGMNTLDDDFVS 547 Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAFV--- 607 + T D +L + G+ Y L + LS + G I +I+L+ ++ I T Sbjct: 548 QLVTTSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPIVNVIELDQDEVISTMIAVKD 607 Query: 608 YDSTCKLLV-VSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGE 666 DS LV V+ KG S R GK +K ++++ V G+ ++G Sbjct: 608 LDSEEDFLVFVTKKGLIKRSALSNFNRINRNGKIAIKFRDDDELIAVCLTDGEKHILIGT 667 Query: 667 NRKLLI-FSIDQIPEMSR----GKGVRLQSYKDGGISDVICFKICEG-----LTWIDSAG 716 + LI F + MSR KG+RL +DG +VI + + + + G Sbjct: 668 AQASLIRFKETDVRAMSRIAAGVKGIRL---RDG--DEVIGLDVADDDNQDEILVVTEKG 722 Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751 S D L RGG+G K R+G+ + Sbjct: 723 YGKRTSIEDY--RLSNRGGMGVKTAKLTERNGRLV 755 >gi|296452675|ref|ZP_06894366.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Clostridium difficile NAP08] gi|296258457|gb|EFH05361.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Clostridium difficile NAP08] Length = 808 Score = 444 bits (1143), Expect = e-122, Method: Compositional matrix adjust. Identities = 249/628 (39%), Positives = 397/628 (63%), Gaps = 30/628 (4%) Query: 13 VEENVKAVSLRFA--LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70 +EEN K + + A +++ Y+ Y++S I RA+PD+RDG KPVHRRI+++MSE+ L Sbjct: 1 MEENNKILPIEIAEEMKKSYIDYSMSVIAGRALPDVRDGLKPVHRRILYSMSELNLTPDK 60 Query: 71 AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130 ++KSARIVG+V+GK HPHGD +VY ++VR+AQ F R L+ G GNFG++DGDS AA R Sbjct: 61 PYRKSARIVGDVLGKYHPHGDIAVYYAMVRMAQDFSTRALLVDGHGNFGSVDGDSPAAMR 120 Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190 YTEA+M++++ +L+ ++++ VDF+ ++E EP V P+++PNLL NG++GIAVGMATS Sbjct: 121 YTEAKMSKLSLELLRDIEKETVDFKPNFDESLKEPSVLPARYPNLLVNGSNGIAVGMATS 180 Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250 IP HN+ E+ +A + LIDNPE S++ L++++ GPDFPT II+ +ESI E+YR GRG Sbjct: 181 IPPHNLAEVIDATVYLIDNPECSVDDLIKFVQGPDFPTAAIIM-GKESIAEAYRTGRGKV 239 Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-V 309 +VR+R +EE+ +G I+VTEIPYQV K++L+E+IAEL+ KRI + D+RDES + + Sbjct: 240 KVRSRAFIEELPKGKQQIIVTEIPYQVNKAKLVERIAELVKEKRIEGISDLRDESNRNGM 299 Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369 RIV+ K R + ++++ +++ S ME F + M L G+ P+V+ L IL ++ H+ Sbjct: 300 RIVIELK-RDANANIVLNNLYKHSQMEDTFSIIMLALVDGQ-PRVLNLKQILYHYIKHQE 357 Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTEN 426 +V+ RR+ F + + R IL+GL IA NID +I++IR + K ++ +F+LTE Sbjct: 358 DVVTRRTKFELNKAEARAHILEGLKIALDNIDAVISLIRASKTGQEAKLGLIEKFNLTEI 417 Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486 Q AIL++RL+ L LE +I++E ++L+ + ++ +L + N I EI +KE + Sbjct: 418 QAQAILDMRLQRLTGLERDKIEAEYEDLIKKINRLKEILADERLLLNVIKDEITIIKENY 477 Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD------- 539 S RRT E+ A+ + +I E I + +++ G+I+ L S + Sbjct: 478 SDE-----RRT---EIRHAEGEIDMRDLISDEEIAITLTHFGYIKRLPSDTYKSQKRGGR 529 Query: 540 -LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDL 596 +SAL +E D ++ + T R+L + G+ + L A + G+ G AI L+ L Sbjct: 530 GISALTTREEDFVRHLVTTTTHSRLLFFTNKGRVFKLNAYEIPEGKRQAKGTAIVNLLQL 589 Query: 597 NHNQDIVTAFVYDSTCK---LLVVSSKG 621 + ++ I T D + LL+ + KG Sbjct: 590 SADEKIATLIPIDGNDENEYLLLATKKG 617 >gi|329767179|ref|ZP_08258706.1| DNA gyrase A subunit [Gemella haemolysans M341] gi|328836846|gb|EGF86493.1| DNA gyrase A subunit [Gemella haemolysans M341] Length = 815 Score = 444 bits (1143), Expect = e-122, Method: Compositional matrix adjust. Identities = 275/782 (35%), Positives = 449/782 (57%), Gaps = 72/782 (9%) Query: 13 VEENVKAVSLR---FALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69 +E+N ++LR +E +L Y++S I RA+PD+RDG KPVHRRI++A +++GL + Sbjct: 1 MEDNKNNITLRNITTEIENSFLDYSMSVIVSRALPDVRDGLKPVHRRILYAFNDLGLTYD 60 Query: 70 AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129 +KKSA +VGEV+ K HPHGD + Y ++VRLAQ F RYPL+ GQGNFG+IDGD AAA Sbjct: 61 KPYKKSAFVVGEVMAKYHPHGDSATYGTIVRLAQDFNSRYPLVDGQGNFGSIDGDGAAAM 120 Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189 RYTEARM+++A +L+ +++D VD +D Y+ EP V P++ PNLL NG+SGIAVGMAT Sbjct: 121 RYTEARMSKIASELLRDINKDTVDMQDNYDGTKQEPKVLPARIPNLLVNGSSGIAVGMAT 180 Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249 +IP HN+ E+ + +AL DN EI+I +L+ I GPDFPTG ++ R IV++Y GRG Sbjct: 181 NIPPHNLGEVIDGVIALADNSEITIAELMSKIKGPDFPTGSFLL-GRSGIVKAYTTGRGS 239 Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-ED 308 +R + +E++ G IV+TEIPYQV K++L+EKIAEL K+I + D+RDES + Sbjct: 240 VIMRGKTEIEQMKNGKERIVITEIPYQVNKAKLVEKIAELARDKKIEGVTDLRDESNLKG 299 Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368 +RIV+ + R ++ ++++ +++ L+ +++ F +NM L G VP+++ L +L +L H+ Sbjct: 300 IRIVIELR-RDVNSNVILNNLYKLTPLQSSFGVNMIALVNG-VPKLLNLKEVLYYYLEHQ 357 Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTE 425 +EV+ RR+ F ++ R IL+GL IA NID II++IR ++ K ++ +F LTE Sbjct: 358 KEVVVRRTKFDLKKAQARAHILEGLRIALDNIDRIISLIRGSQTAEEAKAGLIDQFGLTE 417 Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485 Q AIL++RL+ L LE +I+ E L+ ++ +L ++ + E+ EVKE Sbjct: 418 IQAQAILDMRLQRLTGLERDKIEEEYSKLMELIADLEDILAKPERVIQIVKDELLEVKEK 477 Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD------ 539 F +RR+ E + D+ + +IEKE I + +S+ +I+ L + + Sbjct: 478 FGD-----KRRSVIIE-GQVDQIE-NEDLIEKEQIIITLSHNQYIKRLAASTYKSQGRGG 530 Query: 540 --LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAG--NLLSGRGHG-------- 587 ++ + + D++ L T D IL + GK YTL N +S + G Sbjct: 531 RGVNGMTTNDEDNVAYMLSCSTHDHILFFTDKGKVYTLKGYEINQMSRQSKGIPIINLLE 590 Query: 588 ----EAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLK 643 E + +I ++ Q+ T+ ++ + ++ S G+ + +KGK LK Sbjct: 591 IEKEEKVNSIIAISDLQEEGTSLIFSTKYGIIKKSKLGDYASI--------LKKGKIALK 642 Query: 644 VSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEM---SRG-KGVRLQSYKDGGIS 698 + ++ + V ++T D + +V N + + + +++ M SRG KG+ L Sbjct: 643 LDEDDSLIDVQRITDDQDIMIVTANGQAIRINAEKVRTMGRVSRGVKGITLSP------D 696 Query: 699 DVICFKICEGLTWIDSAGRSYNRSENDLLGWLGK--------RGGVGSLVPKGFPRSGKF 750 D + G+ +D + + +EN +G + K RGG G V K ++GK Sbjct: 697 DYVV-----GMEVVDESKKILTVTENG-IGKISKSTEFNVINRGGKGVKVAKVTKKTGKI 750 Query: 751 LS 752 ++ Sbjct: 751 VA 752 >gi|258646171|ref|ZP_05733640.1| DNA gyrase, A subunit [Dialister invisus DSM 15470] gi|260403557|gb|EEW97104.1| DNA gyrase, A subunit [Dialister invisus DSM 15470] Length = 815 Score = 444 bits (1142), Expect = e-122, Method: Compositional matrix adjust. Identities = 257/682 (37%), Positives = 397/682 (58%), Gaps = 45/682 (6%) Query: 22 LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81 L ++ Y+ YA+S I RA+PD+RDG KPVHRRI++AM+E G+ A+KKSARIVG+ Sbjct: 13 LERQMKTSYIDYAMSVIVTRALPDVRDGLKPVHRRILYAMNEAGMLPNKAYKKSARIVGD 72 Query: 82 VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE 141 V+GK HPHGD +VYDS VR+AQ F RYPL+ G GNFG+IDGDSAAA RYTE RM ++ Sbjct: 73 VLGKYHPHGDTAVYDSAVRMAQDFSIRYPLVDGHGNFGSIDGDSAAAMRYTEMRMAKITL 132 Query: 142 LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICE 201 +L+ +D+D VDF Y+ +EP+V PS+ PNLL NG+ GIAVGMAT++P HN+ E+ Sbjct: 133 EMLRDIDKDTVDFMPNYDGSLTEPLVLPSRIPNLLVNGSYGIAVGMATNVPPHNLAEVVN 192 Query: 202 AALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEV 261 A+IDNPEI+I++L++YI GPDFPT II + + I ++YR GRG VRAR +EE+ Sbjct: 193 GLCAMIDNPEITIDELMKYIKGPDFPTAAII-QGHKGIEDTYRTGRGSITVRARVDIEEM 251 Query: 262 GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLD 321 RG I+VTE+PYQV K+RL+E IA+L K I + +RDES ++ ++ Sbjct: 252 ERGKNRIIVTELPYQVNKARLVEMIADLSRQKVIDGITALRDESDRSGMRIVIELRSDVN 311 Query: 322 PDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQ 381 P +++ +++ + M+ F M L G P+++ L IL +L H+ EV+ RRS + ++ Sbjct: 312 PQIMLNNLYKHTQMQVNFGSIMLALVDGH-PRILNLKQILYYYLKHQEEVITRRSRYELE 370 Query: 382 AIDRRVEILKGLLIAYLNIDEIIAII---RNEDKPKPVMVSRFSLTENQVDAILNLRLRS 438 + + IL+GLLIA +IDE+I I R ++ K ++S+F L+E Q AIL++RLR Sbjct: 371 KAEAKAHILEGLLIALDHIDEVIRTIRESRTDEVAKTALISKFGLSEKQAVAILDMRLRR 430 Query: 439 LRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTT 498 L LE +I+++ ++ + LL+S ++ + E+ + K F G +R T Sbjct: 431 LTGLERDKIEADYKDVQETIAYLRDLLSSREKIMGVVKAELTDEKNNF------GDKRRT 484 Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DLSALHFKEGDS 550 + D +I +P+T+ ++ + +I+ + S + +S L K+GD Sbjct: 485 EIAAALGDMDVTD--LIPDKPMTITLTKQNYIKRIDSSDLRTQKKGGRGVSGLKMKDGDY 542 Query: 551 LKIALHAHTTDRILLLSTDGK-----AYTLPAG----------NLLSGRGHGEAIQLLID 595 ++ L T DRIL + GK AY +P N ++ G E + L+D Sbjct: 543 VRKILTTSTHDRILFFTNKGKVYMKTAYDIPESSRTARGSAMINFITSLGADEHVTELLD 602 Query: 596 LNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655 L+ ++ + T LL+V+ G E + G +++ E+++ V+ Sbjct: 603 LDISE--------EGTKYLLMVTKYGYIKKTALEEYKNINKNGLIAMRLKDEDRLVAVLP 654 Query: 656 VTGDHVAVVGENRKLLI-FSID 676 V G+ ++G + + I FSID Sbjct: 655 VKGNEEIIMGTRKGMAIRFSID 676 >gi|255102905|ref|ZP_05331882.1| DNA gyrase subunit A [Clostridium difficile QCD-63q42] Length = 808 Score = 444 bits (1142), Expect = e-122, Method: Compositional matrix adjust. Identities = 249/628 (39%), Positives = 396/628 (63%), Gaps = 30/628 (4%) Query: 13 VEENVKAVSLRFA--LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70 +EEN K + + A +++ Y+ Y++S I RA+PD+RDG KPVHRRI+++MSE+ L Sbjct: 1 MEENNKILPIEIAEEMKKSYIDYSMSVIAGRALPDVRDGLKPVHRRILYSMSELNLTPDK 60 Query: 71 AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130 ++KSARIVG+V+GK HPHGD +VY ++VR+AQ F R L+ G GNFG++DGDS AA R Sbjct: 61 PYRKSARIVGDVLGKYHPHGDIAVYYAMVRMAQDFSTRALLVDGHGNFGSVDGDSPAAMR 120 Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190 YTEA+M++++ +L+ ++++ VDF+ ++E EP V P+++PNLL NG++GIAVGMATS Sbjct: 121 YTEAKMSKLSLELLRDIEKETVDFKPNFDESLKEPSVLPARYPNLLVNGSNGIAVGMATS 180 Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250 IP HN+ E+ +A + LIDNPE S++ L++++ GPDFPT II+ +ESI E+YR GRG Sbjct: 181 IPPHNLAEVIDATVYLIDNPECSVDDLIKFVQGPDFPTAAIIM-GKESIAEAYRTGRGKV 239 Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-V 309 +VR+R +EE+ +G I+VTEIPYQV K++L+E+IAEL+ KRI + D+RDES + + Sbjct: 240 KVRSRAFIEELPKGKQQIIVTEIPYQVNKAKLVERIAELVKEKRIEGISDLRDESNRNGM 299 Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369 RIV+ K R + ++++ +++ S ME F + M L G+ P+V+ L IL ++ H+ Sbjct: 300 RIVIELK-RDANANIVLNNLYKHSQMEDTFSIIMLALVDGQ-PRVLNLKQILYHYIKHQE 357 Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTEN 426 +V+ RR+ F + + R IL+GL IA NID +I++IR + K ++ +F LTE Sbjct: 358 DVVTRRTKFELNKAEARAHILEGLKIALDNIDAVISLIRASKTGQEAKLGLIEKFKLTEI 417 Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486 Q AIL++RL+ L LE +I++E ++L+ + ++ +L + N I EI +KE + Sbjct: 418 QAQAILDMRLQRLTGLERDKIEAEYEDLIKKINRLKEILADERLLLNVIKDEITIIKENY 477 Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD------- 539 S RRT E+ A+ + +I E I + +++ G+I+ L S + Sbjct: 478 SDE-----RRT---EIRHAEGEIDMRDLISDEEIAITLTHFGYIKRLPSDTYKSQKRGGR 529 Query: 540 -LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDL 596 +SAL +E D ++ + T R+L + G+ + L A + G+ G AI L+ L Sbjct: 530 GISALTTREEDFVRHLVTTTTHSRLLFFTNKGRVFKLNAYEIPEGKRQAKGTAIVNLLQL 589 Query: 597 NHNQDIVTAFVYDSTCK---LLVVSSKG 621 + ++ I T D + LL+ + KG Sbjct: 590 SADEKIATLIPIDGNDENEYLLLATKKG 617 >gi|315187333|gb|EFU21089.1| DNA gyrase subunit A [Spirochaeta thermophila DSM 6578] Length = 809 Score = 444 bits (1142), Expect = e-122, Method: Compositional matrix adjust. Identities = 256/627 (40%), Positives = 380/627 (60%), Gaps = 31/627 (4%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 V V + ++E YL YA+S I RA+PD+RDG KPV RRI++AM EMGL FKKS Sbjct: 7 KVVPVPIEEEIKESYLNYAMSVIVSRALPDVRDGLKPVQRRILYAMYEMGLRHDRPFKKS 66 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 RIVG+V+GK HPHGDQS+YD+LVRLAQ F RYP++ GQGNFG+IDGD AA RYTEA+ Sbjct: 67 GRIVGDVLGKYHPHGDQSIYDALVRLAQEFSMRYPMVIGQGNFGSIDGDPPAAMRYTEAK 126 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 + ++AE +L+ ++++ VDF Y+E EP V P+ P LL NG SGIAVGMAT+IP HN Sbjct: 127 LHKIAEEMLRDINKETVDFVPNYDESLKEPAVLPAAVPYLLINGASGIAVGMATNIPPHN 186 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 + E+ A A+IDNPEI + LL Y+ GPDFPTGGII ++ I +Y G+GG VRAR Sbjct: 187 LGEVSRAIAAVIDNPEIPPKDLLRYVKGPDFPTGGIIF-GKKGIRSAYLTGKGGVVVRAR 245 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315 +E + G IVVTEIPY V KS L+E++A L+ K+I + +IRDES + ++F Sbjct: 246 LSLETLRSGREAIVVTEIPYAVNKSSLLERVASLVRDKKIEGISEIRDESDRNGLRIVFE 305 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 R + P +++ +F ++ ++T F +N L G+ PQ + L I++ +++HR+EV+ RR Sbjct: 306 LKRGVIPKVVINRLFSMTPLQTTFHVNALALVGGK-PQTLTLKEIIQHFISHRKEVVTRR 364 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAII---RNEDKPKPVMVSRFSLTENQVDAIL 432 + + ++ + R IL+GL IA NIDE+IAII R D + ++ RF L+E Q AIL Sbjct: 365 AQYDLRKAEERAHILEGLKIALDNIDEVIAIIKKSRTVDSARNNLMRRFGLSERQAQAIL 424 Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492 ++RL+ L LE +I EL+ L E++ LL S ++ + E E+ + + Sbjct: 425 DMRLQKLTSLETRKIIEELEATLKLIEELKELLGSERKILEVVKNETLELAKGY------ 478 Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL-------KSHSVDLSALHF 545 G R T A+ ++ +I+KE + V++S G I+ + + Sbjct: 479 GDERRTEIVAEEAEDLDIED-LIQKEDMVVLVSRDGLIKRMPVSAYRRQGRGGKGLMGGK 537 Query: 546 KEGDSLKIALH-AHTTDRILLLSTDGKAYTL-----PAGNLLSGRGHGEAIQLLIDLNHN 599 GD + L A T D IL LS +GKAY L P G+ +S G++I+ L+ L+ + Sbjct: 538 LSGDDVVSHLFVASTHDYILFLSNEGKAYYLKVHEIPEGSRVS---QGKSIRSLVQLSPD 594 Query: 600 QD---IVTAFVYDSTCKLLVVSSKGNA 623 + +V+ ++ ++ ++++KG A Sbjct: 595 EQVSAVVSVETFEEEREVFMITAKGLA 621 >gi|319893735|ref|YP_004150610.1| DNA gyrase subunit A [Staphylococcus pseudintermedius HKU10-03] gi|317163431|gb|ADV06974.1| DNA gyrase subunit A [Staphylococcus pseudintermedius HKU10-03] Length = 878 Score = 444 bits (1142), Expect = e-122, Method: Compositional matrix adjust. Identities = 280/755 (37%), Positives = 437/755 (57%), Gaps = 46/755 (6%) Query: 26 LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85 + E +L YA+S I RA+PD+RDG KPVHRRI++ ++E G+ +KKSARIVG+V+GK Sbjct: 18 MRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKSARIVGDVMGK 77 Query: 86 LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145 HPHGD S+Y+++VR+AQ F RYPL+ GQGNFG++DGD AAA RYTEARMT++A +L+ Sbjct: 78 YHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEARMTKLALELLR 137 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 +++D +DF D Y+ + EP V PS+FPNLL NG SGIAVGMAT+IP HN++E+ + L+ Sbjct: 138 DINKDTIDFIDNYDGNEREPSVLPSRFPNLLVNGASGIAVGMATNIPPHNMREVIDGVLS 197 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265 L NP+I+I +L+E I GPDFPT G+I+ + I +Y GRG +RA+ +E G G Sbjct: 198 LSHNPDITISELMEDIQGPDFPTAGLIL-GKSGIRRAYETGRGSVIMRAKAEIESRGGGR 256 Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA--EDVRIVLFPKNRSLDPD 323 IVVTEIP+QV K+R+IEKIAEL+ K+I + D+RDE++ VR+V+ + + + Sbjct: 257 DRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRVVIDVR-KDANAS 315 Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383 +++ +++ + ++T F +NM L GR PQ++ L L +L H++EV+ RR+ + ++ Sbjct: 316 VILNNLYKQTPLQTSFGVNMIALVNGR-PQLINLKQALYHYLEHQKEVVRRRTEYNLRKA 374 Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQVDAILNLRLRSLR 440 R IL+GL IA +IDEII IIR + K M SRF+L+E Q AIL++RLR L Sbjct: 375 KDRAHILEGLRIALDHIDEIITIIRESETDKVAMESLQSRFALSERQAQAILDMRLRRLT 434 Query: 441 KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500 LE +I+ E ++L+A +++++L ++ + E+ E+KE F G R T Sbjct: 435 GLERDKIEQEYNDLIAYIAELEAILADEEKLLELVREELTEIKEKF------GDDRRTEI 488 Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DLSALHFKEGDSLK 552 ++ D+ + +I +E I + +S+ +I+ L + + + ++ + D + Sbjct: 489 QLGGIDQLE-DEDLIPEEQIVITLSHNNYIKRLPASTYRAQNRGGRGVQGMNTLDDDFVS 547 Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAFV--- 607 + T D++L + G+ Y L + LS + G I +I+L+ ++ I T Sbjct: 548 QLVTTSTHDQVLFFTNKGRVYKLKGYEVPELSRQSKGIPIVNVIELDQDEVISTMIAVKD 607 Query: 608 YDSTCKLLV-VSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGE 666 DS LV V+ KG S R GK +K ++++ V G+ ++G Sbjct: 608 LDSEEDFLVFVTKKGLIKRSALSNFNRINRNGKIAIKFRDDDELIAVRLTDGEKHILIGT 667 Query: 667 NRKLLI-FSIDQIPEMSR----GKGVRLQSYKDGGISDVICFKICEG-----LTWIDSAG 716 + LI F + MSR KG+RL +DG +VI + + + + G Sbjct: 668 AQASLIRFKETDVRAMSRIAAGVKGIRL---RDG--DEVIGLDVADDDNQDEILVVTEKG 722 Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751 S D L RGG+G K R+G+ + Sbjct: 723 YGKRTSIEDY--RLSNRGGMGVKTAKLTERNGRLV 755 >gi|188584650|ref|YP_001916195.1| DNA gyrase subunit A [Natranaerobius thermophilus JW/NM-WN-LF] gi|179349337|gb|ACB83607.1| DNA gyrase subunit A [Natranaerobius thermophilus JW/NM-WN-LF] Length = 807 Score = 444 bits (1142), Expect = e-122, Method: Compositional matrix adjust. Identities = 259/697 (37%), Positives = 416/697 (59%), Gaps = 30/697 (4%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 V + ++ +E +L YA+S I RA+PD+RDG KPVHRRI+ AM ++G+ +KKSA Sbjct: 9 VVPIDIQEEMENSFLDYAMSVIVSRALPDVRDGLKPVHRRILFAMHDLGITPEKPYKKSA 68 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VGEV+GK HPHGD ++YD++VR+AQ F RYPL+ G GNFG++DGDSAAA RYTE RM Sbjct: 69 RVVGEVLGKYHPHGDVALYDAMVRMAQDFSTRYPLVDGHGNFGSVDGDSAAAMRYTEVRM 128 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 +++ +L+ +D++ +D++ ++E EPVV PS+FPNLL NG++GIAVGMAT+IP HN+ Sbjct: 129 AKISTELLKDIDKETIDYQQNFDETLEEPVVLPSRFPNLLVNGSAGIAVGMATNIPPHNL 188 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ + +A+I+NPEI+ E L+ YI GPDFPTGGII+ R I ++Y GRG ++RA+ Sbjct: 189 DEVIDGIVAMIENPEIADEDLMNYIKGPDFPTGGIIL-GRNGIKDAYSTGRGKLKIRAKT 247 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316 +E + I+VTEIPYQV K++LIE IA L+ K+I + D+RDES D V+ Sbjct: 248 EIENLKGNKHRILVTEIPYQVNKAKLIESIASLVREKKIEGISDLRDESDRDGLRVVIEL 307 Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376 R ++P++L+ ++ + +E F + + L G P+V+ L IL +L ++EV+ RR+ Sbjct: 308 KRDVNPNVLLNQLYKYTTLEQSFGIILLALVNGE-PKVLSLREILDHYLEFQKEVIIRRT 366 Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVDAILN 433 + ++ + R IL+GL IA N+D +I +IR K +++ FSL++ Q AIL+ Sbjct: 367 KYLLRKAEARAHILEGLKIALNNLDAVIKLIRQSKTVKEAKEGLMNNFSLSDKQAQAILD 426 Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493 +RL+ L LE +I+ E LL + + + +L + N I EI+E+KE +S S Sbjct: 427 MRLQKLTALERDKIEEEYSELLKKIDYYNRVLGDEQLVLNIIKEEIQEIKEKYSDS---- 482 Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHF 545 RRT ++ D+ ++ +I E + + ++++G++ R+ K +S + Sbjct: 483 -RRTLIT--NKTDELD-EEDLIPDEEVIITLTHQGYVKRVPLSTYRNQKRGGRGISGMTT 538 Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIV 603 K D ++ T + IL + GK Y L + S + G AI L+ ++ ++ I Sbjct: 539 KNDDFVEHLFATSTHNYILFFTNKGKVYRLKVYEIPEASRQARGTAIVNLLAIDPDEHI- 597 Query: 604 TAFV----YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD 659 TA + + L V+ +G A V SE+ A + G + ++ ++++ V G Sbjct: 598 TAVIPIQEFTEDDYLFFVTKQGVAKKVILSELKAYRKDGLIAINLNEDDELIDVHLTDGK 657 Query: 660 HVAVVGENRKLLI-FSIDQIPEMSRG-KGVRLQSYKD 694 ++G + L I FS +++ M R +GV+ S KD Sbjct: 658 QEIILGTEQGLAIKFSEEEVRSMGRNSRGVKGISLKD 694 >gi|254977348|ref|ZP_05273820.1| DNA gyrase subunit A [Clostridium difficile QCD-66c26] gi|255652275|ref|ZP_05399177.1| DNA gyrase subunit A [Clostridium difficile QCD-37x79] gi|306521989|ref|ZP_07408336.1| DNA gyrase, A subunit [Clostridium difficile QCD-32g58] Length = 808 Score = 444 bits (1142), Expect = e-122, Method: Compositional matrix adjust. Identities = 249/628 (39%), Positives = 396/628 (63%), Gaps = 30/628 (4%) Query: 13 VEENVKAVSLRFA--LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70 +EEN K + + A +++ Y+ Y++S I RA+PD+RDG KPVHRRI+++MSE+ L Sbjct: 1 MEENNKILPIEIAEEMKKSYIDYSMSVIAGRALPDVRDGLKPVHRRILYSMSELNLTPDK 60 Query: 71 AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130 ++KSARIVG+V+GK HPHGD +VY ++VR+AQ F R L+ G GNFG++DGDS AA R Sbjct: 61 PYRKSARIVGDVLGKYHPHGDIAVYYAMVRMAQDFSTRALLVDGHGNFGSVDGDSPAAMR 120 Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190 YTEA+M++++ +L+ ++++ VDF+ ++E EP V P+++PNLL NG++GIAVGMATS Sbjct: 121 YTEAKMSKLSLELLRDIEKETVDFKPNFDESLKEPSVLPARYPNLLVNGSNGIAVGMATS 180 Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250 IP HN+ E+ +A + LIDNPE S++ L++++ GPDFPT II+ +ESI E+YR GRG Sbjct: 181 IPPHNLAEVIDATVYLIDNPECSVDDLIKFVQGPDFPTAAIIM-GKESIAEAYRTGRGKV 239 Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-V 309 +VR+R +EE+ +G I+VTEIPYQV K++L+E+IAEL+ KRI + D+RDES + + Sbjct: 240 KVRSRAFIEELPKGKQQIIVTEIPYQVNKAKLVERIAELVKEKRIEGISDLRDESNRNGM 299 Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369 RIV+ K R + ++++ +++ S ME F + M L G+ P+V+ L IL ++ H+ Sbjct: 300 RIVIELK-RDANANIVLNNLYKHSQMEDTFSIIMLALVDGQ-PRVLNLKQILYHYIKHQE 357 Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTEN 426 +V+ RR+ F + + R IL+GL IA NID +I++IR + K ++ +F LTE Sbjct: 358 DVVTRRTKFELNKAEARAHILEGLKIALDNIDAVISLIRASKTGQEAKIGLIEKFKLTEI 417 Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486 Q AIL++RL+ L LE +I++E ++L+ + ++ +L + N I EI +KE + Sbjct: 418 QAQAILDMRLQRLTGLERDKIEAEYEDLIKKINRLKEILADERLLLNVIKNEITIIKENY 477 Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD------- 539 S RRT E+ A+ + +I E I + +++ G+I+ L S + Sbjct: 478 SDE-----RRT---EIRHAEGEIDMRDLISDEEIAITLTHFGYIKRLPSDTYKSQKRGGR 529 Query: 540 -LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDL 596 +SAL +E D ++ + T R+L + G+ + L A + G+ G AI L+ L Sbjct: 530 GISALTTREEDFVRHLVTTTTHSRLLFFTNKGRVFKLNAYEIPEGKRQAKGTAIVNLLQL 589 Query: 597 NHNQDIVTAFVYDSTCK---LLVVSSKG 621 + ++ I T D + LL+ + KG Sbjct: 590 SADEKIATLIPIDGNDENEYLLLATKKG 617 >gi|164510803|emb|CAK18884.1| topoisomerase II subunit A [Staphylococcus pseudintermedius] Length = 878 Score = 444 bits (1141), Expect = e-122, Method: Compositional matrix adjust. Identities = 280/755 (37%), Positives = 436/755 (57%), Gaps = 46/755 (6%) Query: 26 LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85 + E +L YA+S I RA+PD+RDG KPVHRRI++ ++E G+ +KKSARIVG+V+GK Sbjct: 18 MRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKSARIVGDVMGK 77 Query: 86 LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145 HPHGD S+Y+++VR+AQ F RYPL+ GQGNFG++DGD AAA RYTEARMT++A +L+ Sbjct: 78 YHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEARMTKLALELLR 137 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 +++D +DF D Y+ + EP V PS+FPNLL NG SGIAVGMAT+IP HN++E+ + L+ Sbjct: 138 DINKDTIDFIDNYDGNEREPSVLPSRFPNLLVNGASGIAVGMATNIPPHNMREVIDGVLS 197 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265 L NP+I+I +L+E I GPDFPT G+I+ + I +Y GRG +RA+ +E G G Sbjct: 198 LSHNPDITISELMEDIQGPDFPTAGLIL-GKSGIRRAYETGRGSVIMRAKAEIESRGGGR 256 Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA--EDVRIVLFPKNRSLDPD 323 IVVTEIP+QV K+R+IEKIAEL+ K+I + D+RDE++ VR+V+ + + + Sbjct: 257 DRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRVVIDVR-KDANAS 315 Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383 +++ +++ + ++T F +NM L GR PQ++ L L +L H++EV+ RR+ + ++ Sbjct: 316 VILNNLYKQTPLQTSFGVNMIALVNGR-PQLINLKQALYHYLEHQKEVVRRRTEYNLRKA 374 Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQVDAILNLRLRSLR 440 R IL+GL IA +IDEII IIR + K M SRF+L+E Q AIL++RLR L Sbjct: 375 KDRAHILEGLRIALDHIDEIITIIRESETDKVAMESLQSRFALSERQAQAILDMRLRRLT 434 Query: 441 KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500 LE +I+ E ++L+A +++++L ++ + E+ E+KE F G R T Sbjct: 435 GLERDKIEQEYNDLIAYIAELEAILADEEKLLELVREELTEIKEKF------GDDRRTEI 488 Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DLSALHFKEGDSLK 552 ++ D+ + +I +E I + +S+ +I+ L + + + ++ + D + Sbjct: 489 QLGGIDQLE-DEDLIPEEQIVITLSHNNYIKRLPASTYRAQNRGGRGVQGMNTLDDDFVS 547 Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAFV--- 607 + T D +L + G+ Y L + LS + G I +I+L+ ++ I T Sbjct: 548 QLVTTSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPIVNVIELDQDEVISTMIAVKD 607 Query: 608 YDSTCKLLV-VSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGE 666 DS LV V+ KG S R GK +K ++++ V G+ ++G Sbjct: 608 LDSEEDFLVFVTKKGLIKRSALSNFNRINRNGKIAIKFRDDDELIAVRLTDGEKHILIGT 667 Query: 667 NRKLLI-FSIDQIPEMSR----GKGVRLQSYKDGGISDVICFKICEG-----LTWIDSAG 716 + LI F + MSR KG+RL +DG +VI + + + + G Sbjct: 668 AQASLIRFKETDVRAMSRIAAGVKGIRL---RDG--DEVIGLDVADDDNQDEILVVTEKG 722 Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751 S D L RGG+G K R+G+ + Sbjct: 723 YGKRTSIEDY--RLSNRGGMGVKTAKLTERNGRLV 755 >gi|85857849|ref|YP_460051.1| DNA gyrase subunit A [Syntrophus aciditrophicus SB] gi|85720940|gb|ABC75883.1| DNA gyrase subunit A [Syntrophus aciditrophicus SB] Length = 833 Score = 444 bits (1141), Expect = e-122, Method: Compositional matrix adjust. Identities = 296/750 (39%), Positives = 433/750 (57%), Gaps = 40/750 (5%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 V++ +++ Y+ YA+S I RAIPD+RDG KPVHRR++ AMSEMG + +KKSARIV Sbjct: 12 VNIEDEMKKSYMDYAMSVIIGRAIPDVRDGLKPVHRRVLFAMSEMGNRWNKPYKKSARIV 71 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G++IGK HPHGD + YD++VRLAQ F RYPLI GQGNFG+ID D AA RYTE RM ++ Sbjct: 72 GDIIGKYHPHGDAAAYDTIVRLAQDFSMRYPLIDGQGNFGSIDDDPPAAMRYTEVRMARI 131 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 E IL +++D VDF Y+E EP + PS+ P LL NGT+GIAVG+AT+IP HNV E+ Sbjct: 132 TEEILADLEKDTVDFVPNYDESLMEPSILPSRIPTLLLNGTAGIAVGVATNIPPHNVTEV 191 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 +ALI NPE+++E+++++I GPDFPT G I RE I+ +YR GRG R+RA+ +E Sbjct: 192 LSGTIALIRNPEMTLEEIMQFIPGPDFPTAGFI-NGREGIISAYRTGRGIIRLRAKVVIE 250 Query: 260 EVGRGSW-CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFPKN 317 + R IVVTEIPYQV K+ LIEKI+EL+ K+I + D+RDES E +RIV+ K Sbjct: 251 KNERNDRESIVVTEIPYQVNKAALIEKISELVKEKKITGISDLRDESDREGIRIVIDLK- 309 Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377 R + ++++ ++ + ME+ F + M + G+ P V L ILK ++ R+ V+ RR++ Sbjct: 310 RDENSNVILNQLYKHTQMESTFGIIMLAIENGQ-PHVFNLIEILKSFIEFRKVVIVRRTT 368 Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFSLTENQVDAILNL 434 F + R IL+GL+IA NIDE++A+I+ P+ + SRFSLT+ Q AIL++ Sbjct: 369 FEVNKARERAHILEGLIIALDNIDEVVAVIKASKSPQEAASALCSRFSLTDIQARAILDM 428 Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494 RL+ L LE+ +IK E D LL E E++ +L+ ++ I I E++EI + D Sbjct: 429 RLQRLTGLEQSKIKEEFDALLKEIERLQGILDDPRKVLEVI---ISEMEEIIDRYGD--E 483 Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFK 546 RRT E+ + + + MI +E + V S G+I R+ + + K Sbjct: 484 RRT---EIVASSEDIDIEDMIAEEEMVVTYSQGGYIKRNPSSLYRTQRRGGRGKVGMMTK 540 Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL-LSGR-GHGEAIQLLIDLNHNQDIVT 604 E D ++ A T D +L+ + G+ Y L + +GR G+ I LI++ ++ + Sbjct: 541 EEDVVERLFIASTHDYVLIFTNAGRLYWLKVYQIPQAGRMAKGKPIVNLINIGPDERVAA 600 Query: 605 AFVYDSTCKLLVVSSKGNAFIVEESEIIA--NTRKGKTFLKVSSEEKMKLV-VKVTGDHV 661 S + V A IV+++++ A N R G + +S +E +LV VK+TG Sbjct: 601 VLPVRSFEEGQAVIMATRAGIVKKTDLTAYSNPRSG-GIIALSIDEGDELVDVKLTGGDQ 659 Query: 662 AVVGENR--KLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKIC-EGLTWIDSAGR 717 V R K + F D I M R +GVR S VI I EG + + + Sbjct: 660 DVFLATRKGKAIRFKEDDIRTMGRTARGVRGISMDSD--DAVIGMDIPREGNAIVTVSEK 717 Query: 718 SYNRSENDLLGWLGKRGGVG----SLVPKG 743 + L KRGG G +VPKG Sbjct: 718 GCGKRTAVSEYRLQKRGGKGMINLRIVPKG 747 >gi|164510806|emb|CAK18886.1| topoisomerase II subunit A [Staphylococcus pseudintermedius] Length = 878 Score = 442 bits (1138), Expect = e-122, Method: Compositional matrix adjust. Identities = 280/755 (37%), Positives = 437/755 (57%), Gaps = 46/755 (6%) Query: 26 LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85 + E +L YA+S I RA+PD+RDG KPVHRRI++ ++E G+ +KKSARIVG+V+GK Sbjct: 18 MRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKSARIVGDVMGK 77 Query: 86 LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145 HPHGD S+Y+++VR+AQ F RYPL+ GQGNFG++DGD AAA RYTEARMT++A +L+ Sbjct: 78 YHPHGDLSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEARMTKLALELLR 137 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 +++D +DF D Y+ + EP V PS+FPNLL NG SGIAVGMAT+IP HN++E+ + L+ Sbjct: 138 DINKDTIDFIDNYDGNEREPSVLPSRFPNLLVNGASGIAVGMATNIPPHNMREVIDGVLS 197 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265 L NP+I+I +L+E I GPDFPT G+I+ + I +Y GRG +RA+ +E G G Sbjct: 198 LSHNPDITISELMEDIQGPDFPTAGLIL-GKSGIRRAYETGRGSVIMRAKAEIESRGGGR 256 Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA--EDVRIVLFPKNRSLDPD 323 IVVTEIP+QV K+R+IEKIAEL+ K+I + D+RDE++ VR+V+ + + + Sbjct: 257 DRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRVVIDVR-KDANAS 315 Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383 +++ +++ + ++T F +NM L GR PQ++ L L +L H++EV+ RR+ + ++ Sbjct: 316 VILNNLYKQTPLQTSFGVNMIALVNGR-PQLINLKQALYHYLEHQKEVVRRRTEYNLRKA 374 Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQVDAILNLRLRSLR 440 R IL+GL IA +IDEII IIR + K M SRF+L+E Q AIL++RLR L Sbjct: 375 KDRAHILEGLRIALDHIDEIITIIRESETDKVAMESLQSRFALSERQAQAILDMRLRRLT 434 Query: 441 KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500 LE +I+ E ++L+A +++++L ++ + E+ E+KE F G R T Sbjct: 435 GLERDKIEQEYNDLIAYIAELEAILADEEKLLELVREELTEIKEKF------GDDRRTEI 488 Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DLSALHFKEGDSLK 552 ++ D+ + +I +E I + +S+ +I+ L + + + ++ + D + Sbjct: 489 QLGGIDQLE-DEDLIPEEQIVITLSHNNYIKRLPASTYRAQNRGGRGVQGMNTLDDDFVS 547 Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAFV--- 607 + T D++L + G+ Y L + LS + G I +I+L+ ++ I T Sbjct: 548 QLVTTSTHDQVLFFTNKGRVYKLKGYEVPELSRQSKGIPIVNVIELDQDEVISTMIAVKD 607 Query: 608 YDSTCKLLV-VSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGE 666 DS LV V+ KG S R GK +K ++++ V G+ ++G Sbjct: 608 LDSEEDFLVFVTKKGLIKRSALSNFNRINRNGKIAIKFRDDDELIAVRLTDGEKHILIGT 667 Query: 667 NRKLLI-FSIDQIPEMSR----GKGVRLQSYKDGGISDVICFKICEG-----LTWIDSAG 716 + LI F + MSR KG+RL +DG +VI + + + + G Sbjct: 668 AQASLIRFKEADVRAMSRIAAGVKGIRL---RDG--DEVIGLDVADDDNQDKILVVTEKG 722 Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751 S D L RGG+G K R+G+ + Sbjct: 723 YGKRTSIEDY--RLSNRGGMGVKTAKLTERNGRLV 755 >gi|313671975|ref|YP_004050086.1| DNA gyrase subunit a [Calditerrivibrio nitroreducens DSM 19672] gi|312938731|gb|ADR17923.1| DNA gyrase subunit A [Calditerrivibrio nitroreducens DSM 19672] Length = 805 Score = 442 bits (1138), Expect = e-122, Method: Compositional matrix adjust. Identities = 279/757 (36%), Positives = 422/757 (55%), Gaps = 60/757 (7%) Query: 30 YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89 YL YA+S I RA+PD+RDG KPVHRR+++AM EMGL +KKSAR+VG+VIGK HPH Sbjct: 21 YLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMYEMGLSHNKPYKKSARVVGDVIGKFHPH 80 Query: 90 GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDE 149 GD +VYD+LVRLAQ F RYPL+ GQGNFG++DGDSAAA RYTE RM ++ + +L +D+ Sbjct: 81 GDSAVYDTLVRLAQDFSMRYPLVDGQGNFGSVDGDSAAAMRYTEVRMAKITDELLLDIDK 140 Query: 150 DAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDN 209 D VDF Y+ EP+V P++ PNLL NG+SGIAVGMAT+IP HN+ E+ +A + IDN Sbjct: 141 DTVDFAPNYDGSIEEPLVLPTRVPNLLINGSSGIAVGMATNIPPHNLGEVVDALIHRIDN 200 Query: 210 PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIV 269 PE +++ +L++I GPDFPT GI++ + + +Y GRG ++RAR ++++ G IV Sbjct: 201 PESTLDDILKFIKGPDFPTAGILMGVSD-LKTAYLTGRGAIKIRARAEIQQLKSGKEQIV 259 Query: 270 VTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKNRSLDPDLLMES 328 +TEIPYQV KS LIEKIAEL+ K I + ++RDES D +R+V+ K L PD+++ Sbjct: 260 ITEIPYQVNKSSLIEKIAELVRDKVIVGITELRDESDRDGIRVVIEIKKGEL-PDVILNQ 318 Query: 329 IFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVE 388 ++ + ME F +N L GR PQ +PL IL E++ HR ++ RR+ F ++ + R+ Sbjct: 319 LYKFTQMEVTFGINTVALVNGR-PQTLPLLKILDEFIGHRITIVTRRTKFLLRKAEERLH 377 Query: 389 ILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEY 445 IL+GL A NIDE+IAII+ + K ++ RFS ++ QV AIL+++L+ L LE Sbjct: 378 ILEGLKTAVENIDEVIAIIKGSADVKEAKAKLIDRFSFSDLQVSAILDMKLQKLTGLEIE 437 Query: 446 QIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRA 505 ++ E L E S+LN+ + I E+ E+K+ ++ +RRT E+ Sbjct: 438 KLVEEYKETLKNIEYYKSILNNHQILMGIIKDELLEIKDKYAD-----KRRT---EIVYD 489 Query: 506 DKATLQQAMIEKEPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHA 557 + +I + V I+N+G+I+ S K SA K D ++ + Sbjct: 490 HNELSIEDLIPDTEMVVTITNQGYIKRTPLSFFSSQKRGGKGKSATLSKGEDFIETLIVT 549 Query: 558 HTTDRILLLSTDG-----KAYTLPA----------GNLLSGRGHGEAIQLLI---DLNHN 599 ++L + G K Y LP NLLS GE I ++ DL+H+ Sbjct: 550 SNHSKLLFFTNQGKIHFLKVYELPESAPGTRGRHISNLLS-FSQGEYIASVVTLSDLDHD 608 Query: 600 QDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV-SSEEKMKLVVKVTG 658 + I Y K V E + R G +K+ ++E + V+ Sbjct: 609 KYIFMCTKYGIVKKTAV-------------EEFKSGRSGIVAMKLRENDELVSTVITTDN 655 Query: 659 DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDS-AG 716 D++ + N K + F ++ +M R GVR + ++ V+ ++ G +I + Sbjct: 656 DNITIATRNGKTIQFESKEVRDMGRTATGVRGITLEEDDY--VVSMEVLTGAPFILTVTS 713 Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753 Y + + RGG G + K P++G + + Sbjct: 714 NGYGKCSLVSDYRIQSRGGKGLKLSKVTPKTGPIVGA 750 >gi|313900989|ref|ZP_07834479.1| DNA gyrase, A subunit [Clostridium sp. HGF2] gi|312954409|gb|EFR36087.1| DNA gyrase, A subunit [Clostridium sp. HGF2] Length = 837 Score = 442 bits (1137), Expect = e-121, Method: Compositional matrix adjust. Identities = 266/692 (38%), Positives = 414/692 (59%), Gaps = 32/692 (4%) Query: 12 LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71 L +E + V + ++ +L Y++S I +RA+PD+RDG KPVHRRI+HAM+E+G+ Sbjct: 3 LNKEKLIQVDISKEMKTSFLDYSMSVIVDRALPDVRDGMKPVHRRILHAMNELGIVASKP 62 Query: 72 FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131 FKKSARIVGEVIGK HPHGD +VYD++VR+AQ F RY L+ G GNFG++DGD AAA RY Sbjct: 63 FKKSARIVGEVIGKYHPHGDTAVYDAMVRMAQDFSYRYMLVQGHGNFGSMDGDGAAAMRY 122 Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191 TEARM+++A +++ +++D VDF Y+ E++EP V P++FPNLL NG+ GIAVGMAT+I Sbjct: 123 TEARMSKIAMEMMKDINKDTVDFIPNYDNEETEPAVLPARFPNLLVNGSVGIAVGMATNI 182 Query: 192 PSHNVQEICEAALALIDNPEISIEKLLE-YIIGPDFPTGGIIVESRESIVESYRLGRGGF 250 P HN+ E +A A++DNPEIS+ +L++ YI GPDFPTGGII+ R I +++ GRG Sbjct: 183 PPHNLTETIDATFAIMDNPEISVVELMDNYIKGPDFPTGGIIL-GRAGIRQAFETGRGSI 241 Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDV 309 VR++ +E++G G IVVTEIPYQV K+ LI KIA+L+ K+I + + DES E + Sbjct: 242 MVRSKHHLEDMGNGKTRIVVTEIPYQVNKANLITKIADLVREKQIEGITYLNDESNREGI 301 Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369 RIV+ + + PD+++ ++ ++ ++T F +NM L + + P+ M + L+ ++ H+ Sbjct: 302 RIVIELR-KDAQPDVILNQLYRMTQLQTSFGVNMLAL-VEKTPKQMGIREALQHYVNHQI 359 Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTEN 426 +V RR+ F ++ + R IL+GL IA +IDEII +IR N+ + + ++ +F LTE Sbjct: 360 DVTVRRTKFELKKAEDRAHILEGLRIALDHIDEIIHLIRSSQNDAEARTGLMEQFKLTEI 419 Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486 Q +AIL +RLR L LE +I++E L+ + +L + + I E+ EVK F Sbjct: 420 QANAILEMRLRRLTGLERDKIENEYRELMNTIADLRDILANHDRVLGIIRDELTEVKNRF 479 Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV-------- 538 RRT E+S AD + +I E + + ++ G+I+ + + + Sbjct: 480 GDE-----RRT---EISEADYDMQDEDLIPVEDVVITMTTNGYIKRMPTDTYRTQNRGGR 531 Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEAIQLLIDL 596 + + E D + + + T D ++L + GK Y + + SGR G + L++L Sbjct: 532 GVKGMSVNEDDIVDLLITMSTHDYLMLFTNLGKVYRIKGYKVPNSGRTAKGLPVVNLLNL 591 Query: 597 NHNQDIVTAFV---YDSTCK-LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652 + ++ V A V DS LL V+ G SE + + GK + + +++ Sbjct: 592 D-KEEKVRALVPVRPDSESSFLLFVTKNGLVKRTPMSEFDSIRQNGKIAITLREFDELVG 650 Query: 653 VVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR 683 V + TG D + + G N K + F D I M R Sbjct: 651 VKETTGDDEIIIAGSNGKAVRFHEDDIRAMGR 682 >gi|257452985|ref|ZP_05618284.1| DNA gyrase subunit A [Fusobacterium sp. 3_1_5R] gi|317059525|ref|ZP_07924010.1| DNA gyrase subunit A [Fusobacterium sp. 3_1_5R] gi|313685201|gb|EFS22036.1| DNA gyrase subunit A [Fusobacterium sp. 3_1_5R] Length = 811 Score = 441 bits (1135), Expect = e-121, Method: Compositional matrix adjust. Identities = 238/613 (38%), Positives = 388/613 (63%), Gaps = 28/613 (4%) Query: 26 LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85 L+E YL Y++S I RA+PD+RDG KPVHRRI+ AM+EMG+ FKKSARIVGEV+GK Sbjct: 13 LKESYLDYSMSVIVSRALPDVRDGLKPVHRRILFAMNEMGMTNDKPFKKSARIVGEVLGK 72 Query: 86 LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145 HPHGD +VY+++VR+AQ F RY L+ G GNFG+IDGDSAAA RYTEARM+++ +L+ Sbjct: 73 YHPHGDTAVYNTMVRMAQEFNYRYMLVEGHGNFGSIDGDSAAAMRYTEARMSKITAELLE 132 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 +D++ +DFR +++ EP V PSK P+LL NG++GIAVGMAT+IP HN+ E+ + +L Sbjct: 133 DIDKNTIDFRKNFDDSLDEPTVLPSKLPHLLLNGSTGIAVGMATNIPPHNLGELVDGSLQ 192 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265 LIDNPEIS +L+EYI GPDFPTGGII + ++ I ++Y GRG RVR + +EE G Sbjct: 193 LIDNPEISDLELMEYIKGPDFPTGGII-DGKKGIRDAYLTGRGKIRVRGKVKIEENKNGK 251 Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLFPKNRSLDPDL 324 + +++ EIPYQ+ KS LIE+IA L+ K+I + D+RDES E +R+V+ K + +P+L Sbjct: 252 FFLIIEEIPYQLNKSTLIERIANLVKEKKITGIVDLRDESNREGIRVVIELK-KGEEPEL 310 Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384 ++ ++ +++++ F + M L + VP+V+ L +L E+++HR +V+ RR+ F + Sbjct: 311 VLNKLYKYTELQSTFGVIMLAL-VNNVPKVLTLKQMLCEYISHRFQVITRRTLFDLDKAQ 369 Query: 385 RRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAILNLRLRSLRK 441 +R IL+G IA NI+ II +IR + ++ K ++ +++ TE Q +IL++RL+ L Sbjct: 370 KRAHILQGYRIALENINRIIEMIRSSKDANQAKEQLIEKYAFTEIQAKSILDMRLQRLTG 429 Query: 442 LEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCE 501 LE ++++E +L ++ +L+ + ++ + E+ +VK+ + G +R T E Sbjct: 430 LEREKVEAEYQDLEKLIIELQDILSHDNKIYDIMKQELLKVKDTY------GDKRRTHIE 483 Query: 502 VSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD--------LSALHFKEGDSLKI 553 R + L + +I+ E + + +N+G+I+ ++++ ++ L+ + D + Sbjct: 484 EERME--ILPEDLIKDEEMIITCTNKGYIKRIEANKYKSQNRGGKGVTGLNTIDDDVVDT 541 Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQD---IVTAFVY 608 L A D +++ + GK Y + L LS + G I L+ + + I+ V+ Sbjct: 542 ILTASNLDTLMIFTDKGKVYNIKVYQLPELSRQSRGRLISNLLRIGEEEKIRAIIKTRVF 601 Query: 609 DSTCKLLVVSSKG 621 D +L+ V+ +G Sbjct: 602 DKEKELVFVTKQG 614 >gi|208778885|ref|ZP_03246231.1| DNA topoisomerase IV, A subunit [Francisella novicida FTG] gi|208744685|gb|EDZ90983.1| DNA topoisomerase IV, A subunit [Francisella novicida FTG] Length = 742 Score = 441 bits (1135), Expect = e-121, Method: Compositional matrix adjust. Identities = 263/731 (35%), Positives = 418/731 (57%), Gaps = 24/731 (3%) Query: 27 EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86 E+ YL Y++ I +RA+P + DG KPV RRII+AMSE+GL + +KKSAR VG+V+GK Sbjct: 18 EQAYLNYSMYVILDRALPHISDGLKPVQRRIIYAMSEIGLSHLSKYKKSARTVGDVLGKY 77 Query: 87 HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQVAELILQ 145 HPHGD + Y+++V +AQ F RYP I GQGN+G+ID S AA RYTE+R+++ A L+L Sbjct: 78 HPHGDSACYEAMVLMAQDFSYRYPFIDGQGNWGSIDDPKSFAAMRYTESRLSKYAVLLLD 137 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 + + VD+ ++ EP + P++ PN+L NG GIAVGM+T IP HN+ EI A L Sbjct: 138 ELKKGTVDWAKNFDGTMDEPKLLPAQVPNILLNGAMGIAVGMSTYIPPHNITEIINACLQ 197 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265 L+ NP +IE++LE + PD+P G I+ S+E I + Y+ G G R +A + + G Sbjct: 198 LLSNPNSTIEEILEIVEAPDYPGGANIISSKEEIADVYKSGNGSIRQQAVYEYDNHGN-- 255 Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES--AEDVRIVLFPKNRSLDPD 323 +V+T++P+QV + ++E+IA + ++I +++I+DES E V+IVL+ + Sbjct: 256 --VVITKLPHQVSSAAVMEQIANELKQQKITWIKNIQDESDDKEPVKIVLYSATIKKNIK 313 Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383 +M + +D+E F +NMN++ + PQV L IL EWL +R+ L RR + + Sbjct: 314 KIMGHLLATTDLEKSFRVNMNMIGLDNRPQVKNLLDILNEWLEYRKHTLRRRLQTSLDKV 373 Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLE 443 R+ IL+GLLIA+LNIDE+I IIRN D P + +RF+L+E Q +AILN+RLR L K+E Sbjct: 374 LDRLHILEGLLIAFLNIDEVIDIIRNYDDPSGELQTRFTLSEIQAEAILNIRLRKLAKIE 433 Query: 444 EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVS 503 E +IK E L E+E ++ LNS + N + E +++ TD G R + V+ Sbjct: 434 EIEIKKEQKELQKERELLEGYLNSEVKFRNLMKKEFKQI------LTDFGDSRRSKIIVA 487 Query: 504 RADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRI 563 +A ++ ++ E +T+++S GWIR K ++D + L +K D + ++ ++ Sbjct: 488 EKAQALEEKDLMPSEKVTIILSKAGWIRCAKGENIDPAGLSYKPEDKPFLVTTGNSNIKL 547 Query: 564 LLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNA 623 + S GKAY++ L S RG+GE I I L+ I++ ++ L+ S G A Sbjct: 548 VFFSKLGKAYSMYIDKLPSARGYGEHITTYIPLDKQDQIISMAFVNAAGYFLIASESGKA 607 Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR 683 F++ ++I N GK +++ K + + V + +I + + Sbjct: 608 FVIPAEDLITNKVTGKNIF--DADDVFKFIPYDKDLKMLAVSSQGRAIIRDFASFALLKK 665 Query: 684 GKG---VRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNR--SENDLLGWLGKRGGVGS 738 GKG +RL K + + F+ + LT +AG+ + R S+N + K G G Sbjct: 666 GKGKSIIRLD--KKDKLKFIELFRANQELTL--NAGKRFIRIDSKNIETYYSDKPSGGGV 721 Query: 739 LVPKGFPRSGK 749 L+P+GF + K Sbjct: 722 LLPQGFRKITK 732 >gi|218283251|ref|ZP_03489312.1| hypothetical protein EUBIFOR_01901 [Eubacterium biforme DSM 3989] gi|218216006|gb|EEC89544.1| hypothetical protein EUBIFOR_01901 [Eubacterium biforme DSM 3989] Length = 822 Score = 441 bits (1134), Expect = e-121, Method: Compositional matrix adjust. Identities = 260/686 (37%), Positives = 400/686 (58%), Gaps = 30/686 (4%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 V+ V + + +L Y++S I RA+PD+RDG KPVHRRI+HAM+++G+ G A KKSA Sbjct: 11 VEDVEISKEMRTAFLDYSMSVIVSRALPDVRDGMKPVHRRILHAMNQLGITSGVAHKKSA 70 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 RIVGEVIGK HPHGD +VYD++VR+AQ F RYPL+ G GNFG++DGD AAA RYTEARM Sbjct: 71 RIVGEVIGKYHPHGDTAVYDAMVRMAQDFSYRYPLVDGHGNFGSLDGDGAAAMRYTEARM 130 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 ++++ +++ + +D VDF Y+ E++EPVV PS+ PNLL NG GIAVGMAT+IP HN+ Sbjct: 131 SKISMEMMRDIQKDTVDFIPNYDGEENEPVVLPSRIPNLLINGAVGIAVGMATNIPPHNL 190 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E +A A++DNP+I++ +L+E I GPDFPTGGII+ R+ I +++ GRG +R+++ Sbjct: 191 SETIQAIFAVMDNPDITVPQLMEVIKGPDFPTGGIIL-GRKGIRQAFETGRGSIMIRSKY 249 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLFP 315 VEE+ G I+ EIPYQV K+ LI K+A LI K I + + DES E +RIV+ Sbjct: 250 RVEELTNGKKQIIFYEIPYQVNKANLITKMASLIRDKAIQGVTYLNDESNREGIRIVMEL 309 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 K + ++++ +F L+ ++T F +NM L GR P+ +PL I+ +++ H+ +V+ R+ Sbjct: 310 K-KDAQEEVILNQLFRLTPLQTSFGINMLALENGR-PKQLPLKDIIHDYIDHQVDVVVRK 367 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV----MVSRFSLTENQVDAI 431 + F ++ R IL+GL IA +IDE+I +IR+ K + + F L+ Q AI Sbjct: 368 TQFELKKAQDRAHILEGLRIAMDHIDEVIHMIRSSKKDEAGLSQDLCDAFGLSMIQAKAI 427 Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491 L ++LR L LE +I++E LL E + +L + + I ++ E+ + + Sbjct: 428 LAMQLRRLSGLERDKIENEYQQLLLTIEDLKDILANHDRVLQIIRDDLNEIDQKYGDE-- 485 Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSAL 543 RRT E+S A + +I E + + ++ G+I R+ + +L Sbjct: 486 ---RRT---EISDASVDMEDEDLIPVEDVIITLTESGYIKRQLVDTYRAQNRGGRGIKSL 539 Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL--LIDLNHNQD 601 E DS+ + T D +LL + G+ Y L N+ SG + I + L+ L + Sbjct: 540 TLNEEDSIDTMISMSTHDFLLLFTDKGRVYRLKGYNVPSGSRTSKGIPIVNLMTLEKGEK 599 Query: 602 I---VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG 658 + V D + LL V+ G SE R GK + + +++++ V TG Sbjct: 600 VNVLVAVPKDDESETLLFVTKNGIVKRTSVSEFENINRNGKIAISLKPDDELRFVKLTTG 659 Query: 659 -DHVAVVGENRKLLIFSIDQIPEMSR 683 D V + G N K + F+ DQ+ M R Sbjct: 660 QDEVIISGSNGKAVRFNEDQVRIMGR 685 >gi|325478817|gb|EGC81927.1| DNA gyrase, A subunit [Anaerococcus prevotii ACS-065-V-Col13] Length = 814 Score = 441 bits (1134), Expect = e-121, Method: Compositional matrix adjust. Identities = 276/766 (36%), Positives = 446/766 (58%), Gaps = 45/766 (5%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 + N+ V L +++ YL Y++S I RA+PD+RDG KPVHRRI++ M +GLD + Sbjct: 4 DNNIINVDLEEKMKDSYLEYSMSVIVSRALPDVRDGLKPVHRRILYGMEGLGLDPNKPTR 63 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSAR+VG+V+GK HPHGD ++YD+LVRLAQ F RYPL GQGNFG+IDGD AAA RYTE Sbjct: 64 KSARVVGDVMGKYHPHGDSAIYDALVRLAQDFSTRYPLAQGQGNFGSIDGDDAAAMRYTE 123 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 +M+++A+ +L+ +++D VDF ++EE+ EP V PS+FPNLL NG++GIAVGMAT++ Sbjct: 124 VKMSKIAKEMLRDINKDTVDFMPNFDEEEMEPTVLPSRFPNLLVNGSNGIAVGMATNMAP 183 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E +A +A + NPEISIE+L + + GPDFPTG I+ + I ++Y+ GRG ++R Sbjct: 184 HNLGESIDACVAYMKNPEISIEELNKILPGPDFPTGAYIL-GKSGIKDAYQTGRGKVKLR 242 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312 A +E + I+V+EIPYQV KSRLIEKIA+L+ K+I + DIRDES + +RIV Sbjct: 243 AVAKIEPFKKNRERIIVSEIPYQVNKSRLIEKIADLVKDKKIDGISDIRDESDRKGMRIV 302 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 + K R + ++++ +++ + +ET F + +N+ + +PQV+ L +++ ++ H++EV+ Sbjct: 303 IEIK-RDSNANIVLNNLYKYTQLETTFGI-INLALVDGIPQVLNLKELIEYYIDHQKEVV 360 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVD 429 RR+SF + R I++GL+IA NIDEII IIR + D+ K + +F+LT+ Q Sbjct: 361 TRRTSFDLSKAKARKHIVEGLIIAIDNIDEIIRIIRSSYDNDEIKKIFFEKFNLTDKQSQ 420 Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489 AIL+++L+ L LE ++ +E L + S+LNS + I E+ E+K+ FS Sbjct: 421 AILDMQLKRLSGLEIDKLNAENKELEETISYLLSILNSEENLIKLIISEMEEIKDKFSDD 480 Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--KSHSVD------LS 541 RR + D + +IEKE + + ++N G+I+ L ++ V ++ Sbjct: 481 ----RRSKIIPDEGEID----IEELIEKEDVLLTLTNDGYIKRLPIDTYKVQNRGGKGIA 532 Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHN 599 A + KEGD +K +T + +L ++ GK Y+L + G + G AI +++L Sbjct: 533 AGNTKEGDFIKKIKTTNTHEDLLFFTSLGKVYSLKTYEVPEGSRQSRGTAIINILNLESG 592 Query: 600 QDIVTAFVYDSTCK--LLVVSSKGNAFIVEESEIIANTRK-GKTFLKVSSEEKMKLVVKV 656 + I + +V+ +K E+E N RK G + + +K+ V ++ Sbjct: 593 ERITEMMTLSELNEDSQIVLQTKDGTIKKTEAENFTNIRKNGIIAISLKDGDKLISVRQI 652 Query: 657 TGDHVAVVGENRKLLI-FSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI-- 712 + ++ + + I F+ + M R +GVR +G +V+ I T++ Sbjct: 653 DKEEELIISTKKGMTIQFNSQDLRSMGRIAQGVRAIKLAEG--DEVVSMNIKGDETYLLV 710 Query: 713 ---DSAGR--SYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753 + G+ S+N +N RGG G K ++GK + + Sbjct: 711 VTENGFGKKTSFNNFKNQ------NRGGKGVKCHKVTDKTGKVVDT 750 >gi|257466635|ref|ZP_05630946.1| DNA gyrase subunit A [Fusobacterium gonidiaformans ATCC 25563] gi|315917789|ref|ZP_07914029.1| DNA gyrase, A subunit [Fusobacterium gonidiaformans ATCC 25563] gi|313691664|gb|EFS28499.1| DNA gyrase, A subunit [Fusobacterium gonidiaformans ATCC 25563] Length = 811 Score = 441 bits (1133), Expect = e-121, Method: Compositional matrix adjust. Identities = 238/613 (38%), Positives = 388/613 (63%), Gaps = 28/613 (4%) Query: 26 LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85 L+E YL Y++S I RA+PD+RDG KPVHRRI+ AM+EMG+ FKKSARIVGEV+GK Sbjct: 13 LKESYLDYSMSVIVSRALPDVRDGLKPVHRRILFAMNEMGMTNDKPFKKSARIVGEVLGK 72 Query: 86 LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145 HPHGD +VY+++VR+AQ F RY L+ G GNFG+IDGDSAAA RYTEARM+++ +L+ Sbjct: 73 YHPHGDTAVYNTMVRMAQEFNYRYMLVEGHGNFGSIDGDSAAAMRYTEARMSKITAELLE 132 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 +D++ +DFR +++ EP V PSK P+LL NG++GIAVGMAT+IP HN+ E+ + +L Sbjct: 133 DIDKNTIDFRKNFDDSLDEPTVLPSKLPHLLLNGSTGIAVGMATNIPPHNLGELVDGSLQ 192 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265 LIDNPEIS +L+EYI GPDFPTGGII + ++ I ++Y GRG RVR + +EE G Sbjct: 193 LIDNPEISDLELMEYIKGPDFPTGGII-DGKKGIRDAYLTGRGKIRVRGKVKIEENKNGK 251 Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLFPKNRSLDPDL 324 + +++ EIPYQ+ KS LIE+IA L+ K+I + D+RDES E +R+V+ K + +P+L Sbjct: 252 FFLIIEEIPYQLNKSTLIERIANLVKEKKITGIVDLRDESNREGIRVVIELK-KGEEPEL 310 Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384 ++ ++ +++++ F + M L + VP+V+ L +L E+++HR +V+ RR+ F + Sbjct: 311 VLNKLYKYTELQSTFGVIMLAL-VNNVPKVLTLKQMLCEYISHRFQVITRRTLFDLDKAQ 369 Query: 385 RRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAILNLRLRSLRK 441 +R IL+G IA NI+ II +IR + ++ K ++ +++ TE Q +IL++RL+ L Sbjct: 370 KRAHILQGYRIALENINRIIEMIRSSKDANQAKEQLIEKYAFTEIQAKSILDMRLQRLTG 429 Query: 442 LEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCE 501 LE ++++E +L ++ +L+ + ++ + E+ +VK+ + G +R T E Sbjct: 430 LEREKVEAEYQDLEKLIIELQDILSYDNKIYDIMKQELLKVKDTY------GDKRRTHIE 483 Query: 502 VSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD--------LSALHFKEGDSLKI 553 R + L + +I+ E + + +N+G+I+ ++++ ++ L+ + D + Sbjct: 484 EERME--ILPEDLIKDEEMIITCTNKGYIKRIEANKYKSQNRGGKGVTGLNTIDDDVVDT 541 Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQD---IVTAFVY 608 L A D +++ + GK Y + L LS + G I L+ + + I+ V+ Sbjct: 542 ILTASNLDTLMIFTDKGKVYNIKVYQLPELSRQSRGRLISNLLRIGEEEKIRAIIKTRVF 601 Query: 609 DSTCKLLVVSSKG 621 D +L+ V+ +G Sbjct: 602 DKEKELVFVTKQG 614 >gi|257462461|ref|ZP_05626873.1| DNA gyrase subunit A [Fusobacterium sp. D12] gi|317060118|ref|ZP_07924603.1| DNA gyrase subunit A [Fusobacterium sp. D12] gi|313685794|gb|EFS22629.1| DNA gyrase subunit A [Fusobacterium sp. D12] Length = 810 Score = 441 bits (1133), Expect = e-121, Method: Compositional matrix adjust. Identities = 243/633 (38%), Positives = 394/633 (62%), Gaps = 43/633 (6%) Query: 9 SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68 SN +EE +K E YL Y++S I RA+PD+RDG KPVHRRI+ AM+EMG+ Sbjct: 5 SNRYIEEELK---------ESYLDYSMSVIVSRALPDVRDGLKPVHRRILFAMNEMGMTN 55 Query: 69 GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128 FKKSARIVGEV+GK HPHGD +VY+++VR+AQ F RY L+ G GNFG+IDGDSAAA Sbjct: 56 DKPFKKSARIVGEVLGKYHPHGDTAVYNTMVRMAQEFNYRYMLVEGHGNFGSIDGDSAAA 115 Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188 RYTEARM+++ +L+ +D++ +DFR +++ EP V PSK P+LL NG++GIAVGMA Sbjct: 116 MRYTEARMSKITAELLEDIDKNTIDFRKNFDDSLDEPTVLPSKLPHLLLNGSTGIAVGMA 175 Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248 T+IP HN+ E+ + +L LIDNP+IS +L+EYI GPDFPTGGII + ++ I ++Y GRG Sbjct: 176 TNIPPHNLGELVDGSLQLIDNPDISDLELMEYIQGPDFPTGGII-DGKKGIRDAYLTGRG 234 Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-E 307 RVR + +EE G + I++ EIPYQ+ K+ LIE+IA L+ K+I + D+RDES E Sbjct: 235 KIRVRGKVKIEENKNGKFFIIIEEIPYQLNKATLIERIANLVKEKKITGIVDLRDESNRE 294 Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367 +R+V+ K + +P+L++ ++ +++++ F + M L + VP+++ L +L E++ H Sbjct: 295 GIRVVIELK-KGEEPELVLNKLYKYTELQSTFGVIMLAL-VNNVPKILTLKQMLSEYIGH 352 Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLT 424 R +V+ RR+ F + +R IL+G IA NI+ II +IR + ++ K ++ +++ T Sbjct: 353 RFQVITRRTLFDLDKAQKRAHILQGYRIALENINRIIEMIRSSKDANQAKEQLIEKYAFT 412 Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSE---LDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481 E Q +IL++RL+ L LE ++++E L+ L+ E + +L+ + ++ + E+ E Sbjct: 413 EIQAKSILDMRLQRLTGLEREKVEAEYQILEKLILE---LQDILSHDSKIYDIMKKELLE 469 Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD-- 539 VKE++ G R T E R + L + +I+ E + + +N+G+I+ ++++ Sbjct: 470 VKEVY------GDNRRTHIEEERME--ILPEDLIKDEEMIITCTNKGYIKRIEANKYKSQ 521 Query: 540 ------LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQ 591 +S L+ + D + L A D +++ + GK Y + L LS + G I Sbjct: 522 NRGGKGVSGLNTIDDDVVDKILTASNLDTLMIFTDKGKVYNIKVYQLPELSRQSRGRLIS 581 Query: 592 LLIDLNHNQD---IVTAFVYDSTCKLLVVSSKG 621 ++ + + I+ ++D +L+ V+ +G Sbjct: 582 NILRIGEEEKIRAIIKTRIFDKEKELIFVTKQG 614 >gi|302341705|ref|YP_003806234.1| DNA gyrase, A subunit [Desulfarculus baarsii DSM 2075] gi|301638318|gb|ADK83640.1| DNA gyrase, A subunit [Desulfarculus baarsii DSM 2075] Length = 834 Score = 441 bits (1133), Expect = e-121, Method: Compositional matrix adjust. Identities = 252/624 (40%), Positives = 380/624 (60%), Gaps = 30/624 (4%) Query: 30 YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89 YL YA+S I RA+PD RDG KPVHRRI+ AM E+ DF +KKSAR+VG+VIGK HPH Sbjct: 21 YLDYAMSVIVGRALPDARDGLKPVHRRILFAMRELRNDFNKPYKKSARVVGDVIGKYHPH 80 Query: 90 GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDE 149 GD +VYD+LVR+AQ F RY L+ GQGNFG++DGD+AAA RYTE RM ++A +L +D+ Sbjct: 81 GDSAVYDALVRMAQDFAMRYTLVDGQGNFGSVDGDAAAAMRYTEVRMAKLANELLADIDK 140 Query: 150 DAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDN 209 D VDF D Y+ EPVV P+K P LL NG+SGIAVGMAT+IP HN+ E+ A +AL+DN Sbjct: 141 DTVDFTDNYDGSLKEPVVLPTKAPALLINGSSGIAVGMATNIPPHNLGEVARALVALLDN 200 Query: 210 PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRG-SWCI 268 P+I + +L+ ++ GPDFPT G I E I ++YR GRG ++RA+ +E V R I Sbjct: 201 PDIGVRELMRHVPGPDFPTRGFI-HGAEGIEQAYRDGRGSIQIRAKANIETVARTKKTSI 259 Query: 269 VVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMES 328 +VTE+PYQV K+RL+EK+AEL+ K+I + D+RDES D V+F R P +++ Sbjct: 260 IVTELPYQVNKARLLEKVAELVKDKKIEGISDLRDESDRDGMRVVFDLRRDAVPQVVLNQ 319 Query: 329 IFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVE 388 +F + M+T F +NM + GR P++M L +L+ ++ HRRE++ RR++F + + R Sbjct: 320 LFKFTQMQTTFGINMLAIDRGR-PRLMGLKDVLELFIEHRREIVLRRTAFDLAKAEARAH 378 Query: 389 ILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVDAILNLRLRSLRKLEEY 445 IL+GL IA N+DE+I +IR P K ++SRFSL+E Q AIL +RL+ L LE Sbjct: 379 ILEGLRIALDNLDEVIELIRAAKNPAEAKDGLMSRFSLSEKQAQAILEMRLQRLTGLERD 438 Query: 446 QIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRA 505 +I +E ++ E ++ +L S ++ I E + E F +RRT V R Sbjct: 439 KIMAEYREVIKEIARLRHILESDEEVRRIIREETLLLAEEFGD-----KRRTEI--VGRV 491 Query: 506 DKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHA 557 L+ MI +E + V +S+ G+I R+ + + K+ D ++ A Sbjct: 492 SDIELED-MIAEEEMVVTLSHGGYIKRTPTSLYRAQRRGGKGSRGMATKDEDFVEDLFTA 550 Query: 558 HTTDRILLLSTDGKAYTLPAGNL-LSGRG-HGEAIQLLIDLNHNQDIVTAFV---YDSTC 612 T +L+ + G+ Y L + +GR G+AI L+ + ++ + T + Sbjct: 551 STHSYLLIFTDAGRLYWLKVHEIPQAGRASRGKAIVNLVQMLPDESVSTVLAVREFVEGR 610 Query: 613 KLLVVSSKGNAFIVEESEIIANTR 636 ++++ + KG +++++E+++ +R Sbjct: 611 QVIMATQKG---VIKKTELMSFSR 631 >gi|210624031|ref|ZP_03294148.1| hypothetical protein CLOHIR_02100 [Clostridium hiranonis DSM 13275] gi|210153238|gb|EEA84244.1| hypothetical protein CLOHIR_02100 [Clostridium hiranonis DSM 13275] Length = 816 Score = 441 bits (1133), Expect = e-121, Method: Compositional matrix adjust. Identities = 252/613 (41%), Positives = 382/613 (62%), Gaps = 28/613 (4%) Query: 26 LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85 +++ Y+ Y++S I RA+PD+RDG KPVHRRI+++M+E+ L ++KSARIVG+V+GK Sbjct: 19 MKKSYIEYSMSVIVGRALPDVRDGLKPVHRRILYSMNELNLSPDKPYRKSARIVGDVLGK 78 Query: 86 LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145 HPHGD SVY ++V++AQ F R PL+ G GNFG++DGDS AA RYTEARM++++ +L+ Sbjct: 79 YHPHGDSSVYMAMVKMAQDFSTRVPLVDGHGNFGSVDGDSPAAMRYTEARMSKLSMELLR 138 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 +D++ VDF ++E EP+V P++FPNLL NG++GIAVGMATSIP HN+ E+ +A + Sbjct: 139 DIDKETVDFGPNFDESLKEPLVLPARFPNLLVNGSNGIAVGMATSIPPHNLGEVIDATVH 198 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265 LID P+ +E+L+ Y+ GPDFPTG II+ + ESI E+YR GRG +VRAR +EE+ +G Sbjct: 199 LIDRPDADVEELMGYVKGPDFPTGAIIMGT-ESIKEAYRTGRGKIKVRARAEIEELPKGK 257 Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKNRSLDPDL 324 IVVTEIPYQV K+RL+E+IAEL+ K+I + D+RDES + +RIV+ K R ++ ++ Sbjct: 258 QQIVVTEIPYQVNKARLVERIAELVKDKKIEGISDLRDESNRNGMRIVIELK-RDVNANI 316 Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384 ++ +++ S ME + M L G P+ + L +L ++ H+++V+ RR+ + + + Sbjct: 317 ILNNLYKHSQMEETISVIMIALVNGE-PKCLNLKEVLHYYIEHQKDVVTRRTKYELNKAE 375 Query: 385 RRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLTENQVDAILNLRLRSLRK 441 R IL+GL IA NID +I IR+ + K +V RF LTE Q AIL +RL L Sbjct: 376 ARAHILEGLKIALDNIDAVIETIRSSKTSSEAKEKLVERFGLTEIQAQAILEMRLNRLTG 435 Query: 442 LEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCE 501 LE +I +E D L+ + ++ +L S + I EI E+K +K TD RRT E Sbjct: 436 LEREKIDAEYDELMKKIAELKEILASEEVLLGVIKDEIIEIK---NKYTD--ERRT---E 487 Query: 502 VSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKI 553 + A+ +I++E I + +++ G+I RS K +SAL +E D +K Sbjct: 488 IQHAEGEIDVIDLIDEEEIAITLTHFGYIKRLPADTYRSQKRGGRGISALTTREEDFVKH 547 Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFVYDST 611 + T R+L + G+ + L A + G+ G AI L+ L + I T D Sbjct: 548 LISTTTHSRLLFFTNRGRVFRLNAYEIPEGKRQAKGTAIVNLLQLGPGEKIATLIDVDGK 607 Query: 612 CK---LLVVSSKG 621 + LL+ + KG Sbjct: 608 EENKYLLIATKKG 620 >gi|268317740|ref|YP_003291459.1| DNA gyrase, A subunit [Rhodothermus marinus DSM 4252] gi|262335274|gb|ACY49071.1| DNA gyrase, A subunit [Rhodothermus marinus DSM 4252] Length = 853 Score = 441 bits (1133), Expect = e-121, Method: Compositional matrix adjust. Identities = 284/786 (36%), Positives = 435/786 (55%), Gaps = 66/786 (8%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 V++ ++ Y+ Y++S I RA+PD+RDG KPVHRR+++ M E+GL A +KKSARIV Sbjct: 11 VNIEEEMKSSYIDYSMSVIVGRALPDVRDGLKPVHRRVLYGMYELGLTASAPYKKSARIV 70 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 GEV+GK HPHGD +VYD++VR+AQ F RYPL+ GQGNFG+IDGDS AA RYTEAR+T++ Sbjct: 71 GEVLGKYHPHGDAAVYDTMVRMAQDFAMRYPLVDGQGNFGSIDGDSPAAMRYTEARLTRL 130 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 AE +L+ +D+D VDF+D ++ EPVV P+ PNL+ NG GIAVGMAT IP HN+ E Sbjct: 131 AEEMLRDIDKDTVDFQDNFDGSLKEPVVLPAALPNLIVNGADGIAVGMATKIPPHNLGEA 190 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 +A +A+IDNP+IS+++LL+++ PDFPTGGII + E+Y GRG +RAR E Sbjct: 191 VDALVAMIDNPDISLDELLKHLPAPDFPTGGIIY-GYSGVKEAYATGRGRILIRARIHEE 249 Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFPKNR 318 E+ G +V+TEIPYQV KS LIEKIA L+ +RI + DIRDES E +R+VL + Sbjct: 250 EIRPGRMALVITEIPYQVNKSSLIEKIAHLVRERRIDGITDIRDESDREGLRVVLELRKD 309 Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378 ++ P ++ ++ + + F +NM L GR P+ + L +++ +L HR EV+ RR+ F Sbjct: 310 AV-PLVIQNQLYKYTPCQQTFGVNMVALVNGR-PRTLTLKELMRHYLDHRHEVVTRRTRF 367 Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK------------------------ 414 ++ + R IL+GL IA ++D +I IIR P Sbjct: 368 ELRKAEERAHILEGLKIALDHLDLVINIIRYSADPDEARQRLMEGVLPERLTPEQRERLG 427 Query: 415 -PV-MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQW 472 PV +S F+LTE Q +AIL LRL L LE +++ E LL E E++ S+L S +W Sbjct: 428 LPVEQISHFTLTEAQANAILALRLSRLTGLERQKLEEEYRALLQEIERLRSILASEPLRW 487 Query: 473 NQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS 532 I E+ E+K+ ++ + RRT D A + +IE E + V +S++G I+ Sbjct: 488 QIIREELLELKQKYADA-----RRTEIDYAGGGDFAI--EDLIEDEQVVVTLSHQGLIKR 540 Query: 533 LKSH--------SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL-----PAGN 579 H V + A +E D ++ D +L + G+ Y L P G+ Sbjct: 541 TPVHIYRQQGRGGVGMKASGMREDDYIEHLFACKNHDYLLFFTDHGRCYWLRVYDIPEGS 600 Query: 580 LLS-GRGHGEAIQLLID------LNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEII 632 S GR IQ+ D LN ++ + T +L+ + +G +V+++E+ Sbjct: 601 RTSLGRSIRNLIQIAPDDRVRAVLNIRKEDFENPEFLRTHYVLMATRQG---LVKKTELE 657 Query: 633 ANTR-KGKTFLKVSSEEKMKLVVKVTGD---HVAVVGENRKLLIFSIDQIPEMSRG-KGV 687 A +R + + ++ E +L+ V D HV + +++ F + M R +GV Sbjct: 658 AFSRPRADGIIAIAFAEGDELIEAVLTDGRAHVLLASSGGRVVRFDESDVRPMGRNTRGV 717 Query: 688 RLQSYKDG-GISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746 R + + G + ++ + + Y + + +RGG G K PR Sbjct: 718 RGIALETGEQVVGMVAVSPEASPCILSISANGYGKRTPLEEYPVHRRGGKGVWTMKITPR 777 Query: 747 SGKFLS 752 +G+ ++ Sbjct: 778 TGRLIA 783 >gi|227500981|ref|ZP_03931030.1| DNA topoisomerase (ATP-hydrolyzing) [Anaerococcus tetradius ATCC 35098] gi|227216754|gb|EEI82152.1| DNA topoisomerase (ATP-hydrolyzing) [Anaerococcus tetradius ATCC 35098] Length = 814 Score = 440 bits (1132), Expect = e-121, Method: Compositional matrix adjust. Identities = 253/656 (38%), Positives = 405/656 (61%), Gaps = 30/656 (4%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 +N+ + L ++ YL Y++S I RA+PD+RDG KPVHRRI++ M +GLD +K Sbjct: 5 QNIMNIDLESKMKSSYLEYSMSVIVARALPDVRDGLKPVHRRILYDMQLLGLDPNKPTRK 64 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 SAR+VG+V+GK HPHGD ++YD+LVRLAQ F RYPL GQGNFG+IDGD+AAA RYTE Sbjct: 65 SARVVGDVMGKFHPHGDSAIYDALVRLAQDFSTRYPLAQGQGNFGSIDGDAAAAMRYTEV 124 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 RM+++A+ +L+ + +D VDF ++EE+ EP V PS+FPNLL NG++GIAVGMAT++ H Sbjct: 125 RMSKIAKEMLRDIGKDTVDFMPNFDEEELEPTVLPSRFPNLLVNGSNGIAVGMATNMAPH 184 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 N+ E +A +A + +PEISI+ L+E I GPDFPTG +I+ + I E+Y+ GRG + RA Sbjct: 185 NLGEAIDACIAYMKDPEISIDDLIEIIPGPDFPTGALIL-GKSGIKEAYKTGRGKIKQRA 243 Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVL 313 +E + I++TEIPYQV K+RLIEKIA+L+ KR+ + DIRDES + +RIV+ Sbjct: 244 VAKIEPFKKNRERIIITEIPYQVNKARLIEKIADLVKEKRVDGISDIRDESDRKGMRIVV 303 Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373 K R +P++++ +++ + +E F + +N+ + P+++ L +++ ++ H++EV+ Sbjct: 304 EIK-RDSNPNIVLNNLYKYTQLENTFGI-INLALVAGEPKILNLKELIEYYVDHQKEVVT 361 Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDA 430 RR++F + R I++GL+IA +IDEII IIR + D+ K + +F LTE Q A Sbjct: 362 RRTTFDLSKARDRKHIVEGLIIAIDHIDEIIKIIRSSYDNDQIKKIFYDKFKLTEVQSQA 421 Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490 IL+++L+ L LE ++ +E D L + + S+LNS + N I E+ E+KE ++ Sbjct: 422 ILDMQLKRLSGLEIEKLNAENDELARMIDYLLSILNSEETLINLIIDEMTEIKEKYADD- 480 Query: 491 DLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSL--KSHSVD------LS 541 RRT D+ ++ + E+E I + ++ G+I+ L ++ V ++ Sbjct: 481 ----RRTQIV----PDEGEIEISELFEREDILITLTKDGYIKRLPIDTYKVQNRGGKGIA 532 Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHN 599 A + KEGD +K + +T + +L ++ GK ++L A + S G+AI +++L Sbjct: 533 AGNTKEGDFIKKIITTNTHEELLFFTSMGKVFSLEAYMIPEASRTSRGQAIINILNLESG 592 Query: 600 QDIVTAFVYDSTCK--LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653 + I K +V+ +K ++E AN RK + +S +E KL+ Sbjct: 593 ERITEMMTLSDLHKNSQIVLQTKNGTIKKTDAENFANIRKN-GIIAISLQENDKLI 647 >gi|238018253|ref|ZP_04598679.1| hypothetical protein VEIDISOL_00077 [Veillonella dispar ATCC 17748] gi|237864724|gb|EEP66014.1| hypothetical protein VEIDISOL_00077 [Veillonella dispar ATCC 17748] Length = 823 Score = 440 bits (1132), Expect = e-121, Method: Compositional matrix adjust. Identities = 277/762 (36%), Positives = 421/762 (55%), Gaps = 67/762 (8%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 N+ V + ++ Y+ YA+S I RA+PD+RDG KPVHRRI++AM E G+ +KKS Sbjct: 10 NIHPVQIDKEMKNAYIDYAMSVIVMRALPDVRDGLKPVHRRILYAMHETGMTPNKPYKKS 69 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 ARIVG+V+GK HPHGD SVYD+ VRLAQ F RY L+ G GNFG+IDGDSAAA RYTE R Sbjct: 70 ARIVGDVLGKYHPHGDSSVYDATVRLAQDFNTRYLLVDGHGNFGSIDGDSAAAMRYTEVR 129 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 M ++ + +L +D++ VDF Y+E EP V P+K PNLL NG+SGIAVGMAT+IP HN Sbjct: 130 MAKITQEMLADIDKETVDFMPNYDESLQEPTVLPAKIPNLLINGSSGIAVGMATNIPPHN 189 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 + E+C LIDNP++++E+L+ I GPDFPTG +I+ RE I ++Y GRG ++RAR Sbjct: 190 LNEVCNGLTMLIDNPDVTVEELMTQIKGPDFPTGALIL-GREGIKKAYSTGRGSVKMRAR 248 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315 +EE+ +G IVVTEIPYQV K+R+IE IA L K I + +RDES ++ Sbjct: 249 ATIEEMAKGKHKIVVTEIPYQVNKARVIETIANLSRDKVIDGITALRDESDRQGMRIVIE 308 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 + PD+++ ++ + ++ F + M L G P+V+ L +L +L HR +V+ RR Sbjct: 309 LRADVQPDIVLNKLYKHTQLQESFGVIMLALVDGH-PRVLNLKEVLGYYLDHRLDVIVRR 367 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLTENQVDAIL 432 + F + + R IL+GLLIA +IDE+IA IR+ ++ + ++ +F L+E Q AIL Sbjct: 368 TQFELNKAEARAHILEGLLIALDHIDEVIATIRSSQTDEIARNALMQKFGLSEKQAVAIL 427 Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492 ++RLR L LE +I+ E LLA E + ++L S +Q I E+ ++K+ + Sbjct: 428 DMRLRRLTGLEREKIEEEYKELLALIEDLKAILASEARQRQIIKEELEDMKKKYGDP--- 484 Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSH--------SVDLSALH 544 RR + S D + +I E + + ++ +G+I+ + ++ + + Sbjct: 485 -RRSEITIDTSDLD----VEDLIADEEMVITLTKQGYIKRMNANVYRNQHKGGAGVIGMK 539 Query: 545 FKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGH----------GEA 589 KE D + +H T + +L ++ G KAY +P + RG GE+ Sbjct: 540 TKEDDYVTQIMHVRTHNTLLFFTSTGRTYRLKAYEVPEAGSRNSRGTAMVNVLPLAVGES 599 Query: 590 IQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649 + +IDL + V F+ + VV +EE I R G + + ++ Sbjct: 600 VTTMIDLERIHEDVNLFM---VTEFGVVKRTA----IEEYRNI--RRSGLNAINLDEGDR 650 Query: 650 MKLVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSRG----KGVRLQSYKDGGISDVICFK 704 + V TG+ ++G + I FS + M R +G++L + DV+ Sbjct: 651 LISVSVTTGNQDILIGTKLGIAIRFSESDVRLMKRAAHGVRGIKLNT------GDVV--- 701 Query: 705 ICEGLTWID-SAGRSYNRSE------NDLLGW-LGKRGGVGS 738 + G+ D S + + SE ND + L KRGG GS Sbjct: 702 VGAGVLNADESEAQVFTISEEGFGKRNDAEAYTLQKRGGKGS 743 >gi|269926182|ref|YP_003322805.1| DNA gyrase, A subunit [Thermobaculum terrenum ATCC BAA-798] gi|269789842|gb|ACZ41983.1| DNA gyrase, A subunit [Thermobaculum terrenum ATCC BAA-798] Length = 809 Score = 440 bits (1132), Expect = e-121, Method: Compositional matrix adjust. Identities = 234/572 (40%), Positives = 357/572 (62%), Gaps = 20/572 (3%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 V+ V + + YL YA+S I RA+PD+RDG KPV RR ++AM ++GL A ++KSA Sbjct: 6 VRPVDIDQEMRSSYLDYAMSVIMSRALPDVRDGLKPVQRRTLYAMYQLGLTQSARYRKSA 65 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 IVGEV+ HPHGD +VYD+LVR+AQ F RYPL+ GQGNFG++DGDSAAA RYTEAR+ Sbjct: 66 GIVGEVLKLYHPHGDSAVYDTLVRMAQDFTLRYPLVDGQGNFGSVDGDSAAAMRYTEARL 125 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 T +AE +L+ +D+D VDF Y++ + EPVV PS+ PNLL NG+SGIAVGMAT+IP HN+ Sbjct: 126 TGLAEELLRDIDKDTVDFVPNYDDSEREPVVLPSRIPNLLINGSSGIAVGMATNIPPHNL 185 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 +EIC+ + LID+P+ +IE L + + GPDFPTGGII+ RE I+ +Y G+G VRA+ Sbjct: 186 REICDGLIYLIDHPDATIEDLSKIVQGPDFPTGGIIL-GREGILSAYGTGKGKIIVRAKA 244 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316 +EE+ I+VTE+PYQV K+ LIEKIAEL+ +RIP + DIRDES + ++ Sbjct: 245 HIEELRGNRSAIIVTELPYQVNKAALIEKIAELVKEERIPSISDIRDESDRNGMRIVIEL 304 Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376 R P ++ ++ + M+T F +N L G VP+++ L +++ ++ HR+ V+ RR+ Sbjct: 305 RREAQPLKVLNQLYKFTPMQTTFGVNSLALVDGTVPRMLTLKQMMRHYIEHRQIVIRRRT 364 Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAILN 433 + + R +L+GL+IA N+D +I IRN D K ++ F LTE Q AIL+ Sbjct: 365 EYDLGKARARAHVLEGLMIALSNLDAVINTIRNSRSADAAKTKLMQDFGLTEVQAQAILD 424 Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493 ++LR L LE +I+ EL + A+ + +S+L S ++ + +++E+++ + Sbjct: 425 MQLRRLAALERQKIEDELKEVRAQIREYESILASPEKVLAIVKSDLQEIRDKYGDE---- 480 Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHS--------VDLSALHF 545 RRT E S + + +I + V +++RG+I+ L + ++ + Sbjct: 481 -RRTKIVEASGDIR---DEDLIPNIEVAVSVTDRGYIKRLPPDTYRTQRRGGRGVNGVGV 536 Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPA 577 K+ D ++ L +T D +L + GK Y + A Sbjct: 537 KDSDVVEHLLVCNTMDSVLFFTNKGKVYQIKA 568 >gi|77917623|ref|YP_355438.1| DNA gyrase subunit A [Pelobacter carbinolicus DSM 2380] gi|77543706|gb|ABA87268.1| DNA gyrase subunit A [Pelobacter carbinolicus DSM 2380] Length = 835 Score = 440 bits (1131), Expect = e-121, Method: Compositional matrix adjust. Identities = 285/769 (37%), Positives = 442/769 (57%), Gaps = 48/769 (6%) Query: 12 LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71 L E+N K V++ L + Y+ YA+S I RA+PD+RDG KPVHRR+++AM E+G + Sbjct: 2 LTEQNKKTVNIEDELRKSYMDYAMSVIIGRALPDVRDGLKPVHRRVLYAMHELGNAYNKP 61 Query: 72 FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131 +KKSAR+VG+VIGK HPHGD +VYD++VRLAQ F RYPL+ GQGNFG++DGDSAAA RY Sbjct: 62 YKKSARVVGDVIGKYHPHGDSAVYDTIVRLAQDFAMRYPLVDGQGNFGSLDGDSAAAMRY 121 Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191 TE RM ++A +L ++++ VDF Y++ EP+V P KFPNLL NG+ GIAVGMAT I Sbjct: 122 TEVRMDKLAHELLADLEKETVDFGPNYDDSLQEPLVLPCKFPNLLVNGSEGIAVGMATKI 181 Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251 P HN+ E+ + +A+ID+P + E L I GPDFPT G I+ RE I ++Y GRG + Sbjct: 182 PPHNLGEVIDGLVAIIDDPTLDDEDLFRLIPGPDFPTAGFIL-GREGIRKAYETGRGIVQ 240 Query: 252 VRARWCVEEVGRGSW-CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDV 309 +RAR VE+ R S IVVTEIPYQV K+RLIEKIAEL+ +++I + D+RDES E + Sbjct: 241 MRARALVEKDRRTSREKIVVTEIPYQVNKARLIEKIAELVKSRKIEGISDLRDESDREGI 300 Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369 R+V+ K + + P++++ ++ ++ M++ F + M + G+ P+V+ L +L+ ++ HR+ Sbjct: 301 RVVVELK-KDVIPEVILNQLYKMTAMQSSFGIIMLAIVNGQ-PRVLSLRAVLEHFIEHRK 358 Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTEN 426 E++ RR F ++ + + IL+G IA N+DE+IAII+ P K ++ RF+L+E Sbjct: 359 EIVTRRCIFELRKAEEKAHILEGFKIALENLDEVIAIIKQSANPREAKQRLMERFALSEI 418 Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486 Q AIL++RL L +E +I +E +LA ++ +L S + I E+ E++E F Sbjct: 419 QAQAILDMRLHRLTGMERDKIMAEYREILALINRLKEILASEVEILKIIKSELSEIREKF 478 Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSV 538 + RRT + R D + + +I E + V +S+ G+I RS + Sbjct: 479 ADP-----RRTEIVD-HRGDLSL--EDLIVDEDMVVTVSHSGYIKRNAVSLYRSQRRGGK 530 Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDL 596 ++ + KE D ++ A T +L+ + GK Y L + G G+AI L+ L Sbjct: 531 GVTGMRPKEEDFVEQLFIASTHSFVLVFTDAGKVYWLKVHEIPQGGRASRGKAIVNLLQL 590 Query: 597 NHNQDIVTAF-VYDSTCKLLVVSSKGNAFIVEESEII--ANTRKGKTFLKVSSEEKMKLV 653 +++ + V + T ++ + N IV++++++ AN R G + ++ +E +LV Sbjct: 591 QSGENVTSILPVREFTEGRYIIFATQNG-IVKKTDLMAYANPRSG-GIIALTIDEGDRLV 648 Query: 654 VKVTGD---HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGL 709 D V + +N K + F M R +GVR + + G VI ++ Sbjct: 649 STRLSDGEMDVLLASQNGKAIRFPEKDARAMGRTSRGVRGMALE--GDDQVIGMEVVSDT 706 Query: 710 TWIDSA-------GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751 T G+ N E G RGG G + K R+GK + Sbjct: 707 TAATLVTVTEHGYGKRTNLDEYRQQG----RGGKGIITIKTSERNGKVV 751 >gi|313893473|ref|ZP_07827043.1| DNA gyrase, A subunit [Veillonella sp. oral taxon 158 str. F0412] gi|313441916|gb|EFR60338.1| DNA gyrase, A subunit [Veillonella sp. oral taxon 158 str. F0412] Length = 824 Score = 440 bits (1131), Expect = e-121, Method: Compositional matrix adjust. Identities = 243/618 (39%), Positives = 366/618 (59%), Gaps = 36/618 (5%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 N+ V + ++ Y+ YA+S I RA+PD+RDG KPVHRRI++AM E G+ +KKS Sbjct: 10 NIHPVQIDKEMKNAYIDYAMSVIVMRALPDVRDGLKPVHRRILYAMHETGMTPNKPYKKS 69 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 ARIVG+V+GK HPHGD SVYD+ VRLAQ F RY L+ G GNFG+IDGDSAAA RYTE R Sbjct: 70 ARIVGDVLGKYHPHGDSSVYDATVRLAQDFNTRYLLVDGHGNFGSIDGDSAAAMRYTEVR 129 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 M ++ + +L +D++ VDF Y+E EP V P+K PNLL NG+SGIAVGMAT+IP HN Sbjct: 130 MAKITQEMLADIDKETVDFMPNYDESLQEPTVLPAKIPNLLINGSSGIAVGMATNIPPHN 189 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 + E+C LIDNP++++++L+ I GPDFPTG +I+ RE I ++Y GRG ++RAR Sbjct: 190 LNEVCNGLTMLIDNPDVTVDELMTQIKGPDFPTGALIL-GREGIKKAYSTGRGSVKMRAR 248 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315 +EE+ +G IVVTEIPYQV K+R+IE IA L K I + +RDES ++ Sbjct: 249 ATIEEMAKGKHKIVVTEIPYQVNKARVIETIANLSRDKVIDGITALRDESDRQGMRIVIE 308 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 + PD+++ ++ + ++ F + M L G P+V+ L +L +L HR V+ RR Sbjct: 309 LRADVQPDIVLNKLYKHTQLQESFGVIMLALVDGH-PRVLNLKEVLGYYLDHRLNVIVRR 367 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLTENQVDAIL 432 + F + + R IL+GLLIA +IDE+IA IR+ ++ + ++ +F L+E Q AIL Sbjct: 368 TQFELNKAEARAHILEGLLIALDHIDEVIATIRSSQTDEIARNALMQKFGLSEKQAVAIL 427 Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492 ++RLR L LE +I+ E LLA E + ++L+S +Q I E+ ++K+ + Sbjct: 428 DMRLRRLTGLEREKIEDEYKELLALIEDLKAILSSEARQRQIIKDELDDMKKKYGDP--- 484 Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSH--------SVDLSALH 544 RR + S D + +I E + + ++ +G+I+ + ++ + + Sbjct: 485 -RRSEITIDTSDLD----VEDLIADEEMVITLTKQGYIKRMNANVYRNQHKGGAGVIGMK 539 Query: 545 FKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGH----------GEA 589 KE D + +H T + +L ++ G KAY +P + RG GE+ Sbjct: 540 TKEDDYVTQIMHVRTHNTLLFFTSTGRTYRLKAYEVPEAGSRNSRGTAMVNVLPLAVGES 599 Query: 590 IQLLIDLNHNQDIVTAFV 607 + +IDL Q+ V F+ Sbjct: 600 VTTMIDLERVQEDVNLFM 617 >gi|329770364|ref|ZP_08261746.1| A subunit protein [Gemella sanguinis M325] gi|328836487|gb|EGF86147.1| A subunit protein [Gemella sanguinis M325] Length = 814 Score = 440 bits (1131), Expect = e-121, Method: Compositional matrix adjust. Identities = 274/781 (35%), Positives = 449/781 (57%), Gaps = 70/781 (8%) Query: 13 VEENVKAVSLR---FALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69 +E+N ++LR +E +L Y++S I RA+PD+RDG KPVHRRI++A +++GL + Sbjct: 1 MEDNKNNITLRNITTEIENSFLDYSMSVIVSRALPDVRDGLKPVHRRILYAFNDLGLTYD 60 Query: 70 AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129 +KKSA +VGEV+ K HPHGD + Y ++VRLAQ F RYP++ GQGNFG+IDGD AAA Sbjct: 61 KPYKKSAFVVGEVMAKYHPHGDSATYGTIVRLAQDFNSRYPMVDGQGNFGSIDGDGAAAM 120 Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189 RYTEARM+++A +L+ +++D VD +D Y+ EP V PS+ PNLL NG+SGIAVGMAT Sbjct: 121 RYTEARMSKIASEMLRDINKDTVDMQDNYDGTKQEPKVLPSRIPNLLVNGSSGIAVGMAT 180 Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249 +IP HN+ E+ + +AL DN EI+I +L+ I GPDFPTG ++ R IV++Y GRG Sbjct: 181 NIPPHNLGEVIDGVIALADNSEITIAELMTKIKGPDFPTGAYLL-GRSGIVKAYTTGRGS 239 Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-ED 308 +R + +E++ G I++TEIPYQV K++L+EKIAEL K+I + D+RDES + Sbjct: 240 VIMRGKTEIEQMKNGKERIIITEIPYQVNKAKLVEKIAELARDKKIEGITDLRDESNLKG 299 Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368 +RIV+ + R ++ ++++ +++ L+ ++ F +NM L G VP+++ L +L +L H+ Sbjct: 300 MRIVIELR-RDVNSNVILNNLYKLTPLQGSFGVNMIALVDG-VPKLLNLKEVLYYYLEHQ 357 Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTE 425 +EV+ RR+ F + R IL+GL IA NID II++IR ++ K +++ FSL+E Sbjct: 358 KEVVVRRTRFDLNKAKARAHILEGLRIALDNIDRIISLIRGSQTTEEAKSGLINEFSLSE 417 Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485 Q AIL++RL+ L LE +I+ E L+ E ++ +L ++ + E+ EVKE Sbjct: 418 IQAQAILDMRLQRLTGLERDKIEEEYKKLMELIEDLEDILAKPERVLEIVKEELLEVKEK 477 Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD------ 539 F +RR+ E + D+ + +IEKE I + +S+ +I+ L + + Sbjct: 478 FGD-----KRRSVIIE-GQVDQIE-NEDLIEKEQIIITLSHNQYIKRLAASTYKSQGRGG 530 Query: 540 --LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAG--NLLSGRGHG-------- 587 ++ + + D++ L T D IL + GK YTL N +S + G Sbjct: 531 RGVNGMTTNDEDNVAYMLSCSTHDHILFFTDKGKVYTLKGYEINQMSRQSKGIPIINLLE 590 Query: 588 ----EAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGN-AFIVEESEIIANTRKGKTFL 642 E + +I ++ Q+ T+ ++ + ++ S G+ A I+++ +I +G + + Sbjct: 591 IEKEEKVNSIIAISDLQEEGTSLMFSTRFGIVKKSKLGDYASILKKGKIALKLDEGDSLI 650 Query: 643 KVS--SEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISD 699 V ++E+ ++V G + + E + Q+ +SRG KG+ L D Sbjct: 651 DVQRITDEQDIMIVTANGQAIRINAE-------KVRQMGRVSRGVKGITLSP------DD 697 Query: 700 VICFKICEGLTWIDSAGRSYNRSENDLLGWLGK--------RGGVGSLVPKGFPRSGKFL 751 + G+ +D + + +EN +G + K RGG G V K ++GK + Sbjct: 698 YVI-----GMEVVDESKKILTVTENG-IGKISKSTEFNVINRGGKGVKVAKVTKKTGKIV 751 Query: 752 S 752 + Sbjct: 752 A 752 >gi|89255872|ref|YP_513234.1| DNA topoisomerase IV subunit A [Francisella tularensis subsp. holarctica LVS] gi|115314361|ref|YP_763084.1| DNA topoisomerase IV subunit A [Francisella tularensis subsp. holarctica OSU18] gi|167010098|ref|ZP_02275029.1| DNA topoisomerase IV subunit A [Francisella tularensis subsp. holarctica FSC200] gi|169656530|ref|YP_001427921.2| DNA topoisomerase IV subunit A [Francisella tularensis subsp. holarctica FTNF002-00] gi|254367236|ref|ZP_04983264.1| DNA topoisomerase IV subunit A [Francisella tularensis subsp. holarctica 257] gi|89143703|emb|CAJ78902.1| DNA topoisomerase IV subunit A [Francisella tularensis subsp. holarctica LVS] gi|115129260|gb|ABI82447.1| DNA topoisomerase (ATP-hydrolyzing) [Francisella tularensis subsp. holarctica OSU18] gi|134253054|gb|EBA52148.1| DNA topoisomerase IV subunit A [Francisella tularensis subsp. holarctica 257] gi|164551598|gb|ABU60965.2| DNA topoisomerase IV, A subunit [Francisella tularensis subsp. holarctica FTNF002-00] Length = 741 Score = 440 bits (1131), Expect = e-121, Method: Compositional matrix adjust. Identities = 262/731 (35%), Positives = 418/731 (57%), Gaps = 24/731 (3%) Query: 27 EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86 E+ YL Y++ I +RA+P + DG KPV RRII+AMSE+GL + +KKSAR VG+V+GK Sbjct: 18 EQAYLNYSMYVILDRALPHISDGLKPVQRRIIYAMSEIGLSHLSKYKKSARTVGDVLGKY 77 Query: 87 HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQVAELILQ 145 HPHGD + Y+++V +AQ F RYP I GQGN+G+ID S AA RYTE+R+++ A L+L Sbjct: 78 HPHGDSACYEAMVLMAQDFSYRYPFIDGQGNWGSIDDPKSFAAMRYTESRLSKYAVLLLD 137 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 + + VD+ ++ EP + P++ PN+L NG GIAVGM+T IP HN+ EI A L Sbjct: 138 ELKKGTVDWAKNFDGTMDEPKLLPAQVPNILLNGAMGIAVGMSTYIPPHNITEIINACLQ 197 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265 L+ P +IE++LE + PD+P G I+ S+E I + Y+ G G R +A + + G Sbjct: 198 LLSKPNSTIEEILEIVEAPDYPGGANIISSKEEIADVYKSGNGSIRQQAVYEYDNHGN-- 255 Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES--AEDVRIVLFPKNRSLDPD 323 +V+T++P+QV + ++E+IA + ++I +++I+DES E V+IVL+ + Sbjct: 256 --VVITKLPHQVSSAAVMEQIANELKQQKITWIKNIKDESDDKEPVKIVLYSATIKKNIK 313 Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383 +M + + +D+E F +NMN++ + PQV L IL EWL +R+ L RR + + Sbjct: 314 KIMGHLLVTTDLEKSFRVNMNMIGLDNRPQVKNLLDILNEWLEYRKHTLRRRLQTSLDKV 373 Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLE 443 R+ IL+GLLIA+LNIDE+I IIRN D P + +RF+L+E Q +AILN+RLR L K+E Sbjct: 374 LDRLHILEGLLIAFLNIDEVIDIIRNYDDPSGELQTRFTLSEIQAEAILNIRLRKLAKIE 433 Query: 444 EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVS 503 E +IK E L E+E ++ LNS + N + E +++ TD G R + V+ Sbjct: 434 EIEIKKEQKELQKERELLEGYLNSEVKFRNLMKKEFKQI------LTDFGDSRRSKIIVA 487 Query: 504 RADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRI 563 +A ++ ++ E +T+++S GWIR K ++D + L +K D + ++ ++ Sbjct: 488 EKAQALEEKDLMPSEKVTIILSKAGWIRCAKGENIDPAGLSYKPEDKPFLVTTGNSNIKL 547 Query: 564 LLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNA 623 + S GKAY++ L S RG+GE I I L+ I++ ++ L+ S G A Sbjct: 548 VFFSKLGKAYSMYIDKLPSARGYGEHITTYIPLDKQDQIISMAFVNAAGYFLIASESGKA 607 Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR 683 F++ ++I N GK +++ K + + V + +I + + Sbjct: 608 FVIPAEDLITNKVTGKNIF--DADDVFKFIPYDKDLKMLAVSSQGRAIIRDFASFALLKK 665 Query: 684 GKG---VRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNR--SENDLLGWLGKRGGVGS 738 GKG +RL K + + F+ + LT +AG+ + R S+N + K G G Sbjct: 666 GKGKSIIRLD--KKDKLKFIELFRANQELTL--NAGKRFIRIDSKNIETYYSDKPSGGGV 721 Query: 739 LVPKGFPRSGK 749 L+P+GF + K Sbjct: 722 LLPQGFRKITK 732 >gi|148262090|ref|YP_001228796.1| DNA gyrase, A subunit [Geobacter uraniireducens Rf4] gi|146395590|gb|ABQ24223.1| DNA gyrase subunit A [Geobacter uraniireducens Rf4] Length = 832 Score = 440 bits (1131), Expect = e-121, Method: Compositional matrix adjust. Identities = 284/768 (36%), Positives = 437/768 (56%), Gaps = 51/768 (6%) Query: 12 LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71 L + N AV++ ++ Y+ YA+S I RA+PD+RDG KPVHRR ++AM +MG D+ Sbjct: 2 LTQTNKVAVNIEDEMKRSYMDYAMSVIIGRALPDVRDGLKPVHRRCLYAMYDMGNDYNKP 61 Query: 72 FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131 +KKSAR+VG+VIGK HPHGD +VYD+LVR+AQ F RYPL+ GQGNFG+IDGDS AA RY Sbjct: 62 YKKSARVVGDVIGKYHPHGDTAVYDTLVRMAQDFSLRYPLVDGQGNFGSIDGDSPAAMRY 121 Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191 TE RM Q+A +L +D++ V+ Y++ EP+V P+KFPNLL NG+SGIAVGMAT+I Sbjct: 122 TEIRMYQLAHELLADLDKETVEMGPNYDDSLQEPLVLPAKFPNLLVNGSSGIAVGMATNI 181 Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251 P HN+ E+ + +A+I NP ++ E+L+E I GPDFPT G I RE IV +Y GRG + Sbjct: 182 PPHNLSEVIDGIIAVIQNPLLTFEELIELIPGPDFPTAGFIY-GREGIVSAYGTGRGIIQ 240 Query: 252 VRARWCVEEVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDV 309 +RAR +E + IVVTEIPYQV K+RL+EKIAEL+ K+I + D+RDES E + Sbjct: 241 MRARAMIETHKKTERQSIVVTEIPYQVNKARLVEKIAELVREKKIEGISDLRDESDREGM 300 Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369 RIV+ K + +P +L+ ++ + M++ F + M + R P+V+ L + ++ HRR Sbjct: 301 RIVIELK-KDENPQILLNHLYKQTQMQSSFGIIMLAIVNNR-PRVLTLRETINYFIDHRR 358 Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTEN 426 E++ RR+ F ++ + R IL+GL IA N+DE+I +I++ P K ++SRF L+E Sbjct: 359 EIVTRRTIFDLKKAEARAHILEGLKIALDNLDEVINLIKSSASPAEAKTGLMSRFGLSEI 418 Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486 Q AIL++RL L LE +I +E +L ++ +L S + N I E+RE+K+ F Sbjct: 419 QAQAILDMRLHRLTGLERDKIVAEYLEILKYIARLKEILASETEILNIIVGELRELKDKF 478 Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSV 538 +RRT VS+ + +L+ ++E E + V IS+ G+I R+ + Sbjct: 479 GD-----KRRTEI--VSQTAEISLEDTIVE-EDMVVTISHTGYIKRNAVTLYRAQRRGGK 530 Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGRG-HGEAIQLLIDL 596 + + KE D ++ A + D ++ + GK Y L + +GR G+AI L++L Sbjct: 531 GKTGMKTKEEDFVEQLFIASSKDYLMFFTDAGKVYWLKVYEIPEAGRATRGKAIVNLLNL 590 Query: 597 NHNQDIVTAF-VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655 + N+ I V + T ++ + N + + + + + + V+ +E KL+ Sbjct: 591 STNEKITAILPVKEFTADKFIMMATRNGVVKKTPLLEYSHPRVGGIIAVNLDEGDKLITV 650 Query: 656 VTGD---HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGI-----------SDV 700 D V + +N K + F + + R +GVR + +D + +D Sbjct: 651 ALTDGRQDVLLASKNGKSIRFKESDVRTVGRVSRGVRGMTLEDDDVVIGMEILNENFTDS 710 Query: 701 ICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG 748 F + E + G+ SE RGG G + K R+G Sbjct: 711 TLFTVTE-----NGFGKRTELSEY----RCQSRGGKGVITIKTTERNG 749 >gi|254368711|ref|ZP_04984724.1| DNA topoisomerase IV subunit A [Francisella tularensis subsp. holarctica FSC022] gi|157121632|gb|EDO65802.1| DNA topoisomerase IV subunit A [Francisella tularensis subsp. holarctica FSC022] Length = 741 Score = 439 bits (1130), Expect = e-121, Method: Compositional matrix adjust. Identities = 262/731 (35%), Positives = 418/731 (57%), Gaps = 24/731 (3%) Query: 27 EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86 E+ YL Y++ I +RA+P + DG KPV RRII+AMSE+GL + +KKSAR VG+V+GK Sbjct: 18 EQAYLNYSMYVILDRALPHISDGLKPVQRRIIYAMSEIGLSHLSKYKKSARTVGDVLGKY 77 Query: 87 HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQVAELILQ 145 HPHGD + Y+++V +AQ F RYP I GQGN+G+ID S AA RYTE+R+++ A L+L Sbjct: 78 HPHGDSACYEAMVLMAQDFSYRYPFIDGQGNWGSIDDPKSFAAMRYTESRLSKYAVLLLD 137 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 + + VD+ ++ EP + P++ PN+L NG GIAVGM+T IP HN+ EI A L Sbjct: 138 ELKKGTVDWAKNFDGTMDEPKLLPAQVPNILLNGAMGIAVGMSTYIPPHNITEIINACLQ 197 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265 L+ P +IE++LE + PD+P G I+ S+E I + Y+ G G R +A + + G Sbjct: 198 LLSKPNSTIEEILEIVEAPDYPGGANIISSKEEIADVYKSGNGSIRQQAVYEYDNHGN-- 255 Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES--AEDVRIVLFPKNRSLDPD 323 +V+T++P+QV + ++E+IA + ++I +++I+DES E V+IVL+ + Sbjct: 256 --VVITKLPHQVSSAAVMEQIANELKQQKITWIKNIQDESDDKEPVKIVLYSATIKKNIK 313 Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383 +M + + +D+E F +NMN++ + PQV L IL EWL +R+ L RR + + Sbjct: 314 KIMGHLLVTTDLEKSFRVNMNMIGLDNRPQVKNLLDILNEWLEYRKHTLRRRLQTSLDKV 373 Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLE 443 R+ IL+GLLIA+LNIDE+I IIRN D P + +RF+L+E Q +AILN+RLR L K+E Sbjct: 374 LDRLHILEGLLIAFLNIDEVIDIIRNYDDPSGELQTRFTLSEIQAEAILNIRLRKLAKIE 433 Query: 444 EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVS 503 E +IK E L E+E ++ LNS + N + E +++ TD G R + V+ Sbjct: 434 EIEIKKEQKELQKERELLEGYLNSEVKFRNLMKKEFKQI------LTDFGDSRRSKIIVA 487 Query: 504 RADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRI 563 +A ++ ++ E +T+++S GWIR K ++D + L +K D + ++ ++ Sbjct: 488 EKAQALEEKDLMPSEKVTIILSKAGWIRCAKGENIDPAGLSYKPEDKPFLVTTGNSNIKL 547 Query: 564 LLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNA 623 + S GKAY++ L S RG+GE I I L+ I++ ++ L+ S G A Sbjct: 548 VFFSKLGKAYSMYIDKLPSARGYGEHITTYIPLDKQDQIISMAFVNAAGYFLIASESGKA 607 Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR 683 F++ ++I N GK +++ K + + V + +I + + Sbjct: 608 FVIPAEDLITNKVTGKNIF--DADDVFKFIPYDKDLKMLAVSSQGRAIIRDFASFALLKK 665 Query: 684 GKG---VRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNR--SENDLLGWLGKRGGVGS 738 GKG +RL K + + F+ + LT +AG+ + R S+N + K G G Sbjct: 666 GKGKSIIRLD--KKDKLKFIELFRANQELTL--NAGKRFIRIDSKNIETYYSDKPSGGGV 721 Query: 739 LVPKGFPRSGK 749 L+P+GF + K Sbjct: 722 LLPQGFRKITK 732 >gi|118497092|ref|YP_898142.1| DNA topoisomerase IV subunit A [Francisella tularensis subsp. novicida U112] gi|194323389|ref|ZP_03057166.1| DNA topoisomerase IV, A subunit [Francisella tularensis subsp. novicida FTE] gi|118422998|gb|ABK89388.1| DNA topoisomerase IV subunit A [Francisella novicida U112] gi|194322244|gb|EDX19725.1| DNA topoisomerase IV, A subunit [Francisella tularensis subsp. novicida FTE] Length = 742 Score = 439 bits (1130), Expect = e-121, Method: Compositional matrix adjust. Identities = 261/731 (35%), Positives = 418/731 (57%), Gaps = 24/731 (3%) Query: 27 EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86 E+ YL Y++ I +RA+P + DG KPV RRII+AMSE+GL + +KKSAR VG+V+GK Sbjct: 18 EQAYLNYSMYVILDRALPHISDGLKPVQRRIIYAMSEIGLSHLSKYKKSARTVGDVLGKY 77 Query: 87 HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQVAELILQ 145 HPHGD + Y+++V +AQ F RYP I GQGN+G+ID S AA RYTE+R+++ A L+L Sbjct: 78 HPHGDSACYEAMVLMAQDFSYRYPFIDGQGNWGSIDDPKSFAAMRYTESRLSKYAVLLLD 137 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 + + VD+ ++ EP + P++ PN+L NG GIAVGM+T IP HN+ EI A L Sbjct: 138 ELKKGTVDWAKNFDGTMDEPKLLPAQVPNILLNGAMGIAVGMSTYIPPHNITEIINACLQ 197 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265 L+ P +IE++LE + PD+P G I+ S+E I + Y+ G G R +A + + G Sbjct: 198 LLSKPNSTIEEILEIVEAPDYPGGANIISSKEEIADVYKSGNGSIRQQAVYEYDNHGN-- 255 Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES--AEDVRIVLFPKNRSLDPD 323 +V+T++P+QV + ++E+IA + ++I +++I+DES E V+IVL+ + Sbjct: 256 --VVITKLPHQVSSAAVMEQIANELKQQKITWIKNIQDESDDKEPVKIVLYSATTKNNIK 313 Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383 +M + +D+E F +NMN++ + PQV L IL EWL +R+ L RR + + Sbjct: 314 KIMGHLLATTDLEKSFRVNMNMIGLDNRPQVKNLLDILNEWLEYRKHTLRRRLQTSLDKV 373 Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLE 443 R+ IL+GLLIA+LNIDE+I IIRN D P + +RF+L+E Q +AILN+RLR L K+E Sbjct: 374 LDRLHILEGLLIAFLNIDEVIDIIRNYDDPSGELQTRFTLSEIQAEAILNIRLRKLAKIE 433 Query: 444 EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVS 503 E +IK E L E+E ++ LNS + N + E +++ TD G R + V+ Sbjct: 434 EIEIKKEQKELQKERELLEGYLNSEVKFRNLMKKEFKQI------LTDFGDSRRSKIIVA 487 Query: 504 RADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRI 563 +A ++ ++ E +T+++S GWIR K ++D + L +K D + ++ ++ Sbjct: 488 EKAQALEEKDLMPSEKVTIILSKAGWIRCAKGENIDPAGLSYKPEDKPFLVTTGNSNIKL 547 Query: 564 LLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNA 623 + S GKAY++ L S RG+GE I I L+ I++ ++ L+ S G A Sbjct: 548 VFFSKLGKAYSMYVDKLPSARGYGEHITTYIPLDKQDQIISIAFVNAAGYFLIASESGKA 607 Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR 683 F++ ++I N GK +++ K + + + +++I + + Sbjct: 608 FVIPAEDLITNKITGKNIF--DADDVFKFMPFDQDHKMLAISSQGRVIIRDFASFALLKK 665 Query: 684 GKG---VRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNR--SENDLLGWLGKRGGVGS 738 GKG +RL K + + F+ + LT +AG+ + R S+N + K G G Sbjct: 666 GKGKSIIRLD--KKDKLKFIELFRANQELTL--NAGKRFIRIDSKNIETYYSDKPSGGGV 721 Query: 739 LVPKGFPRSGK 749 L+P+GF + K Sbjct: 722 LLPQGFRKITK 732 >gi|229100796|ref|ZP_04231615.1| DNA gyrase subunit A [Bacillus cereus Rock3-28] gi|228682625|gb|EEL36683.1| DNA gyrase subunit A [Bacillus cereus Rock3-28] Length = 822 Score = 439 bits (1129), Expect = e-121, Method: Compositional matrix adjust. Identities = 256/704 (36%), Positives = 417/704 (59%), Gaps = 50/704 (7%) Query: 9 SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68 S+ + ++ +++ + +L YA+S I RA+PD+RDG KPVHRR+++AM+++G+ Sbjct: 2 SDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 61 Query: 69 GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128 A+KKSARIVGEVIGK HPHGD +VY+++VR+AQ F QRY L+ G GNFG++DGDSAAA Sbjct: 62 DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 121 Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188 RYTEARM++++ +++ + ++ +D++D Y+ + EP+V P++FPNLL NGT+GIAVGMA Sbjct: 122 MRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMA 181 Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248 T+IP H + E+ + LAL NP+I+I +L+EYI GPDFPT G+I+ R I +Y GRG Sbjct: 182 TNIPPHQLGEVIDGVLALSHNPDITIAELMEYIPGPDFPTAGLIL-GRSGIRRAYETGRG 240 Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308 +RA+ +EE G I+VTE+PYQV K+RLIEKIAEL+ K+I + D+RDES + Sbjct: 241 SIMLRAKVEIEEKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRN 300 Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368 ++ R + ++L+ +++ + ++T F +NM L G PQV+ L L +L H+ Sbjct: 301 GMRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGE-PQVLNLKQNLYHYLEHQ 359 Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTE 425 + V+ RR+++ ++ + R IL+GL IA ++DE+I +IR+ D K ++ RF L+E Sbjct: 360 KVVIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLMERFGLSE 419 Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485 Q AIL++RL+ L LE +I+ E +L+ ++ ++L ++ I E+ EVKE Sbjct: 420 KQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIAELKAILADEEKVLEIIREELTEVKER 479 Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSLKSHSVD----- 539 F+ +RRT E++ ++ + +I ++ I + +++ G+I+ L + + Sbjct: 480 FND-----KRRT---EITIGGMEFIEDEDLIPEQNIAITLTHNGYIKRLPASTYKTQNRG 531 Query: 540 ---LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLL 581 + + + D ++ L T D IL + GK Y LP NLL Sbjct: 532 GRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEIPEYSRTAKGLPIINLL 591 Query: 582 SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR-KGKT 640 G GE I +I + D F++ +T + + + ++F AN R G Sbjct: 592 -GVDKGEWINAIIPIREFGD--DQFLFFTTKQGISKRTPLSSF--------ANIRTNGLI 640 Query: 641 FLKVSSEEKMKLVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSR 683 + + E+++ V +GD +VG + +LI F+ + M R Sbjct: 641 AISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGR 684 >gi|229099921|ref|ZP_04230844.1| DNA gyrase subunit A [Bacillus cereus Rock3-29] gi|229118984|ref|ZP_04248329.1| DNA gyrase subunit A [Bacillus cereus Rock1-3] gi|228664509|gb|EEL20005.1| DNA gyrase subunit A [Bacillus cereus Rock1-3] gi|228683536|gb|EEL37491.1| DNA gyrase subunit A [Bacillus cereus Rock3-29] Length = 823 Score = 439 bits (1129), Expect = e-121, Method: Compositional matrix adjust. Identities = 256/704 (36%), Positives = 417/704 (59%), Gaps = 50/704 (7%) Query: 9 SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68 S+ + ++ +++ + +L YA+S I RA+PD+RDG KPVHRR+++AM+++G+ Sbjct: 2 SDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 61 Query: 69 GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128 A+KKSARIVGEVIGK HPHGD +VY+++VR+AQ F QRY L+ G GNFG++DGDSAAA Sbjct: 62 DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 121 Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188 RYTEARM++++ +++ + ++ +D++D Y+ + EP+V P++FPNLL NGT+GIAVGMA Sbjct: 122 MRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMA 181 Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248 T+IP H + E+ + LAL NP+I+I +L+EYI GPDFPT G+I+ R I +Y GRG Sbjct: 182 TNIPPHQLGEVIDGVLALSHNPDITIAELMEYIPGPDFPTAGLIL-GRSGIRRAYETGRG 240 Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308 +RA+ +EE G I+VTE+PYQV K+RLIEKIAEL+ K+I + D+RDES + Sbjct: 241 SIMLRAKVEIEEKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRN 300 Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368 ++ R + ++L+ +++ + ++T F +NM L G PQV+ L L +L H+ Sbjct: 301 GMRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGE-PQVLNLKQNLYHYLEHQ 359 Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTE 425 + V+ RR+++ ++ + R IL+GL IA ++DE+I +IR+ D K ++ RF L+E Sbjct: 360 KVVIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLMERFGLSE 419 Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485 Q AIL++RL+ L LE +I+ E +L+ ++ ++L ++ I E+ EVKE Sbjct: 420 KQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIAELKAILADEEKVLEIIREELTEVKER 479 Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSLKSHSVD----- 539 F+ +RRT E++ ++ + +I ++ I + +++ G+I+ L + + Sbjct: 480 FND-----KRRT---EITIGGMEFIEDEDLIPEQNIAITLTHNGYIKRLPASTYKTQNRG 531 Query: 540 ---LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLL 581 + + + D ++ L T D IL + GK Y LP NLL Sbjct: 532 GRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEIPEYSRTAKGLPIINLL 591 Query: 582 SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR-KGKT 640 G GE I +I + D F++ +T + + + ++F AN R G Sbjct: 592 -GVDKGEWINAIIPIREFGD--DQFLFFTTKQGISKRTPLSSF--------ANIRTNGLI 640 Query: 641 FLKVSSEEKMKLVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSR 683 + + E+++ V +GD +VG + +LI F+ + M R Sbjct: 641 AISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGR 684 >gi|254373919|ref|ZP_04989401.1| hypothetical protein FTDG_00074 [Francisella novicida GA99-3548] gi|151571639|gb|EDN37293.1| hypothetical protein FTDG_00074 [Francisella novicida GA99-3548] Length = 742 Score = 439 bits (1129), Expect = e-121, Method: Compositional matrix adjust. Identities = 261/731 (35%), Positives = 418/731 (57%), Gaps = 24/731 (3%) Query: 27 EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86 E+ YL Y++ I +RA+P + DG KPV RRII+AMSE+GL + +KKSAR VG+V+GK Sbjct: 18 EQAYLNYSMYVILDRALPHISDGLKPVQRRIIYAMSEIGLSHLSKYKKSARTVGDVLGKY 77 Query: 87 HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQVAELILQ 145 HPHGD + Y+++V +AQ F RYP I GQGN+G+ID S AA RYTE+R+++ A L+L Sbjct: 78 HPHGDSACYEAMVLMAQDFSYRYPFIDGQGNWGSIDDPKSFAAMRYTESRLSKYAVLLLD 137 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 + + VD+ ++ EP + P++ PN+L NG GIAVGM+T IP HN+ EI A L Sbjct: 138 ELKKGTVDWVKNFDGTMDEPKLLPAQVPNILLNGAMGIAVGMSTYIPPHNITEIINACLQ 197 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265 L+ P +IE++LE + PD+P G I+ S+E I + Y+ G G R +A + + G Sbjct: 198 LLSKPNSTIEEILEIVEAPDYPGGANIISSKEEIADVYKSGNGSIRQQAVYEYDNHGN-- 255 Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES--AEDVRIVLFPKNRSLDPD 323 +V+T++P+QV + ++E+IA + ++I +++I+DES E V+IVL+ + Sbjct: 256 --VVITKLPHQVSSAAVMEQIANELKQQKITWIKNIQDESDDKEPVKIVLYSATTKNNIK 313 Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383 +M + +D+E F +NMN++ + PQV L IL EWL +R+ L RR + + Sbjct: 314 KIMGHLLATTDLEKSFRVNMNMIGLDNRPQVKNLLDILNEWLEYRKHTLRRRLQTSLDKV 373 Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLE 443 R+ IL+GLLIA+LNIDE+I IIRN D P + +RF+L+E Q +AILN+RLR L K+E Sbjct: 374 LDRLHILEGLLIAFLNIDEVIDIIRNYDDPSGELQTRFTLSEIQAEAILNIRLRKLAKIE 433 Query: 444 EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVS 503 E +IK E L E+E ++ LNS + N + E +++ TD G R + V+ Sbjct: 434 EIEIKKEQKELQKERELLEGYLNSEVKFRNLMKKEFKQI------LTDFGDSRRSKIIVA 487 Query: 504 RADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRI 563 +A ++ ++ E +T+++S GWIR K ++D + L +K D + ++ ++ Sbjct: 488 EKAQALEEKDLMPSEKVTIILSKAGWIRCAKGENIDPAGLSYKPEDKPFLVTTGNSNIKL 547 Query: 564 LLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNA 623 + S GKAY++ L S RG+GE I I L+ I++ ++ L+ S G A Sbjct: 548 VFFSKLGKAYSMYVDKLPSARGYGEHITTYIPLDKQDQIISIAFVNAAGYFLIASESGKA 607 Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR 683 F++ ++I N GK +++ K + + + +++I + + Sbjct: 608 FVIPAEDLITNKITGKNIF--DADDVFKFMPFDQDHKMLAISSQGRVIIRDFASFALLKK 665 Query: 684 GKG---VRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNR--SENDLLGWLGKRGGVGS 738 GKG +RL K + + F+ + LT +AG+ + R S+N + K G G Sbjct: 666 GKGKSIIRLD--KKDKLKFIELFRANQELTL--NAGKRFIRIDSKNIETYYSDKPSGGGV 721 Query: 739 LVPKGFPRSGK 749 L+P+GF + K Sbjct: 722 LLPQGFRKITK 732 >gi|309774994|ref|ZP_07670010.1| DNA gyrase, A subunit [Erysipelotrichaceae bacterium 3_1_53] gi|308917248|gb|EFP62972.1| DNA gyrase, A subunit [Erysipelotrichaceae bacterium 3_1_53] Length = 837 Score = 439 bits (1129), Expect = e-121, Method: Compositional matrix adjust. Identities = 264/692 (38%), Positives = 415/692 (59%), Gaps = 32/692 (4%) Query: 12 LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71 L +E + V + + +L Y++S I +RA+PD+RDG KPVHRRI+HAM+E+G+ Sbjct: 3 LNKEKLIQVDISKEMRTSFLDYSMSVIVDRALPDVRDGMKPVHRRILHAMNELGIVASKP 62 Query: 72 FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131 FKKSARIVGEVIGK HPHGD +VYD++VR+AQ F RY L+ G GNFG++DGD AAA RY Sbjct: 63 FKKSARIVGEVIGKYHPHGDIAVYDAMVRMAQDFSYRYMLVQGHGNFGSMDGDGAAAMRY 122 Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191 TEARM+++A +++ ++++ VDF Y+ E++EP V P++FPNLL NG+ GIAVGMAT+I Sbjct: 123 TEARMSKIAMEMMKDINKNTVDFIPNYDNEETEPSVLPARFPNLLVNGSVGIAVGMATNI 182 Query: 192 PSHNVQEICEAALALIDNPEISIEKLLE-YIIGPDFPTGGIIVESRESIVESYRLGRGGF 250 P HN+ E +A A++DNP+IS+ +L++ YI GPDFPTGGII+ R I +++ GRG Sbjct: 183 PPHNLTETIDATFAIMDNPDISVVELMDNYIKGPDFPTGGIIL-GRAGIRQAFETGRGSI 241 Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDV 309 VR++ +E++G G IVVTE+PYQV K+ LI KIA+L+ K+I + + DES E + Sbjct: 242 LVRSKHHLEDMGNGKTRIVVTEVPYQVNKANLITKIADLVREKQIEGITYLNDESNREGI 301 Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369 RIV+ + + PD+++ ++ ++ ++T F +NM L + + P+ M + L+ ++ H+ Sbjct: 302 RIVIELR-KDAQPDVILNQLYRMTQLQTSFGVNMLAL-VDKTPKQMGIREALQHYVDHQI 359 Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTEN 426 +V RR+ F ++ + R IL+GL IA +IDEII +IR N+ + + ++ +F LTE Sbjct: 360 DVTVRRTKFELKKAEDRAHILEGLRIALDHIDEIIHLIRSSQNDAEARAGLMEQFKLTEI 419 Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486 Q +AIL +RLR L LE +I++E L+A + +L + + + I E+ EVK F Sbjct: 420 QANAILEMRLRRLTGLERDKIENEYRELMATIADLRDILANHDRVLSIIRDELTEVKNRF 479 Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV-------- 538 RRT E+S AD + +I E + + ++ G+I+ + + + Sbjct: 480 GDE-----RRT---EISEADYDMQDEDLIPVEDVVITMTTNGYIKRMPTDTYRTQNRGGR 531 Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEAIQLLIDL 596 + + E D + + + T D ++L + GK Y + + SGR G + L++L Sbjct: 532 GVKGMSVNEDDIVDLLITMSTHDYLMLFTNLGKVYRIKGYKVPNSGRTAKGLPVVNLLNL 591 Query: 597 NHNQDIVTAFV---YDSTCK-LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652 + ++ V A V DS LL V+ G SE + + GK + + +++ Sbjct: 592 D-KEEKVRALVPVRPDSESSFLLFVTKNGLVKRTPMSEFDSIRQNGKIAITLREFDELVG 650 Query: 653 VVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR 683 V + TG D + + G N K + F D I M R Sbjct: 651 VKETTGDDEIIIAGSNGKAVRFHEDDIRAMGR 682 >gi|308066846|ref|YP_003868451.1| DNA gyrase subunit A [Paenibacillus polymyxa E681] gi|305856125|gb|ADM67913.1| DNA gyrase subunit A [Paenibacillus polymyxa E681] Length = 854 Score = 439 bits (1128), Expect = e-120, Method: Compositional matrix adjust. Identities = 261/690 (37%), Positives = 414/690 (60%), Gaps = 42/690 (6%) Query: 26 LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85 + E ++ YA+S I RA+PD+RDG KPVHRRI++AMSE+G+ +KKSARIVGEVIGK Sbjct: 18 MRESFMDYAMSIIVSRALPDVRDGLKPVHRRILYAMSELGMSPDKPYKKSARIVGEVIGK 77 Query: 86 LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145 HPHGD +VYD++VR+AQ F RY L+ G GNFG++DGD AAA RYTEAR++++A +L+ Sbjct: 78 YHPHGDTAVYDTMVRMAQDFSLRYMLVDGHGNFGSVDGDMAAAMRYTEARLSKIAMEMLR 137 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 ++++ VDF Y+ E+SEPVV P+++PNLL NG GIAVGMAT+IP HN+ E+ + A Sbjct: 138 DLNKETVDFMPNYDGEESEPVVLPARYPNLLVNGVGGIAVGMATNIPPHNLGEVIDGVQA 197 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265 LI+NP+I+ +L++YI GPDFPT G I+ R I ++Y+ GRG +RA+ +EE+G + Sbjct: 198 LIENPDITPMELMDYIQGPDFPTAGYIL-GRSGIRQAYQTGRGSVTMRAKTTIEEIGNKA 256 Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325 I+V E+PYQV K+RL+EKIAEL+ KRI + D+RDES V+ R ++P+++ Sbjct: 257 R-IIVHELPYQVNKARLVEKIAELVRDKRIEGITDLRDESDRTGMRVVIELRRDVNPNVV 315 Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385 + ++F + M++ F +NM + + P+++ L +L +L H+ EV+ RR+ F ++ + Sbjct: 316 LNNLFKHTAMQSNFGINMLAI-VNNEPKILNLKDVLYHYLKHQVEVIRRRTEFDLKKAEA 374 Query: 386 RVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVDAILNLRLRSLRKL 442 R IL+GL IA ++DE+IA+IR+ + ++ RFSLT Q AIL++RL+ L L Sbjct: 375 RAHILEGLRIALDHLDEVIALIRSSQTAEAAREGLIERFSLTLEQSQAILDMRLQRLTGL 434 Query: 443 EEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEV 502 E +I++E + L+ + + +L + N I+ E+ E+KE F+ RRT E+ Sbjct: 435 EREKIENEYNELIQKIAEYREILANEHLVLNIISEELNELKERFADD-----RRT---EI 486 Query: 503 SRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIA 554 + +++ L + +I +E + + +++ G+I RS K + + K+ D ++ Sbjct: 487 TVGEESILDEDLIPREDVIITVTHTGYIKRLPVTTYRSQKRGGRGVVGMDTKDEDFVEHL 546 Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDI-----VTAFV 607 ++ +L + GK Y + A + LS G I LI + + I + FV Sbjct: 547 FITNSHHHLLFFTDKGKVYRIKAYEIPDLSRTARGTPIINLIQIEQGESINAVIPIEEFV 606 Query: 608 YDSTCKLLVVSSKGNAFIVEESEI--IANTRKGKTFLKVSSEEKMKLVVKVT-GDHVAVV 664 DS L + G I++++ + AN RKG E+ + VK+T G ++ Sbjct: 607 EDSY--LFFATQHG---IIKKTPLDDYANIRKGGLIAINLREDDALIEVKLTDGQQEMII 661 Query: 665 GENRKLLI-FSIDQIPEMSRG----KGVRL 689 G + + I F + M R KG+ L Sbjct: 662 GTAQGMSIRFPESDVRSMGRSATGVKGINL 691 >gi|228942643|ref|ZP_04105175.1| DNA gyrase subunit A [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228975573|ref|ZP_04136125.1| DNA gyrase subunit A [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228982209|ref|ZP_04142498.1| DNA gyrase subunit A [Bacillus thuringiensis Bt407] gi|228777561|gb|EEM25839.1| DNA gyrase subunit A [Bacillus thuringiensis Bt407] gi|228784183|gb|EEM32210.1| DNA gyrase subunit A [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228817069|gb|EEM63162.1| DNA gyrase subunit A [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 823 Score = 439 bits (1128), Expect = e-120, Method: Compositional matrix adjust. Identities = 256/704 (36%), Positives = 417/704 (59%), Gaps = 50/704 (7%) Query: 9 SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68 S+ + ++ +++ + +L YA+S I RA+PD+RDG KPVHRR+++AM+++G+ Sbjct: 2 SDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 61 Query: 69 GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128 A+KKSARIVGEVIGK HPHGD +VY+++VR+AQ F QRY L+ G GNFG++DGDSAAA Sbjct: 62 DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 121 Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188 RYTEARM++++ +++ + ++ +D++D Y+ + EP+V P++FPNLL NGT+GIAVGMA Sbjct: 122 MRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMA 181 Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248 T+IP H + E+ + LAL NP+I+I +L+EYI GPDFPT G+I+ R I +Y GRG Sbjct: 182 TNIPPHQLGEVIDGVLALSHNPDITIAELMEYIPGPDFPTSGLIL-GRSGIRRAYETGRG 240 Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308 +RA+ +EE G I+VTE+PYQV K+RLIEKIAEL+ K+I + D+RDES + Sbjct: 241 SIMLRAKVEIEEKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRN 300 Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368 ++ R + ++L+ +++ + ++T F +NM L G PQV+ L L +L H+ Sbjct: 301 GMRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGE-PQVLNLKQNLYHYLEHQ 359 Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTE 425 + V+ RR+++ ++ + R IL+GL IA ++DE+I +IR+ D K ++ RF L+E Sbjct: 360 KVVIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLMERFGLSE 419 Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485 Q AIL++RL+ L LE +I+ E +L+ ++ ++L ++ I E+ EVKE Sbjct: 420 KQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIAELKAILADEEKVLEIIREELTEVKER 479 Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSLKSHSVD----- 539 F+ +RRT E++ ++ + +I ++ I + +++ G+I+ L + + Sbjct: 480 FND-----KRRT---EITIGGMEFIEDEDLIPEQNIAITLTHNGYIKRLPASTYKTQNRG 531 Query: 540 ---LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLL 581 + + + D ++ L T D IL + GK Y LP NLL Sbjct: 532 GRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEIPEYSRTAKGLPIINLL 591 Query: 582 SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR-KGKT 640 G GE I +I + D F++ +T + + + ++F AN R G Sbjct: 592 -GVDKGEWINAIIPIREFGD--DQFLFFTTKQGISKRTPLSSF--------ANIRTNGLI 640 Query: 641 FLKVSSEEKMKLVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSR 683 + + E+++ V +GD +VG + +LI F+ + M R Sbjct: 641 AISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGR 684 >gi|254372457|ref|ZP_04987946.1| DNA topoisomerase IV subunit A [Francisella tularensis subsp. novicida GA99-3549] gi|151570184|gb|EDN35838.1| DNA topoisomerase IV subunit A [Francisella novicida GA99-3549] Length = 742 Score = 439 bits (1128), Expect = e-120, Method: Compositional matrix adjust. Identities = 261/731 (35%), Positives = 418/731 (57%), Gaps = 24/731 (3%) Query: 27 EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86 E+ YL Y++ I +RA+P + DG KPV RRII+AMSE+GL + +KKSAR VG+V+GK Sbjct: 18 EQAYLNYSMYVILDRALPHISDGLKPVQRRIIYAMSEIGLSHLSKYKKSARTVGDVLGKY 77 Query: 87 HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQVAELILQ 145 HPHGD + Y+++V +AQ F RYP I GQGN+G+ID S AA RYTE+R+++ A L+L Sbjct: 78 HPHGDSACYEAMVLMAQDFSYRYPFIDGQGNWGSIDDPKSFAAMRYTESRLSKYAVLLLD 137 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 + + VD+ ++ EP + P++ PN+L NG GIAVGM+T IP HN+ EI A L Sbjct: 138 ELKKGTVDWVKNFDGTMDEPKLLPAQVPNILLNGAMGIAVGMSTYIPPHNITEIINACLQ 197 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265 L+ P +IE++LE + PD+P G I+ S+E I + Y+ G G R +A + + G Sbjct: 198 LLSKPNSTIEEILEIVEAPDYPGGANIISSKEEIADVYKSGNGSIRQQAVYEYDNHGN-- 255 Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES--AEDVRIVLFPKNRSLDPD 323 +V+T++P+QV + ++E+IA + ++I +++I+DES E V+IVL+ + Sbjct: 256 --VVITKLPHQVSSAAVMEQIANELKQQKITWIKNIQDESDDKEPVKIVLYSATTKNNIK 313 Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383 +M + +D+E F +NMN++ + PQV L IL EWL +R+ L RR + + Sbjct: 314 KIMGHLLATTDLEKSFRVNMNMIGLDNRPQVKNLLDILNEWLEYRKHTLRRRLQTSLDKV 373 Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLE 443 R+ IL+GLLIA+LNIDE+I IIRN D P + +RF+L+E Q +AILN+RLR L K+E Sbjct: 374 LDRLHILEGLLIAFLNIDEVIDIIRNYDDPSGELQTRFTLSEIQAEAILNIRLRKLAKIE 433 Query: 444 EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVS 503 E +IK E L E+E ++ LNS + N + E +++ TD G R + V+ Sbjct: 434 EIEIKKEQKELQKERELLEGYLNSEVKFRNLMKKEFKQI------LTDFGDSRRSKIIVA 487 Query: 504 RADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRI 563 +A ++ ++ E +T+++S GWIR K ++D + L +K D + ++ ++ Sbjct: 488 EKAQALEEKDLMPSEKVTIILSKAGWIRCAKGENIDPAGLSYKPEDKPFLVTTGNSNIKL 547 Query: 564 LLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNA 623 + S GKAY++ L S RG+GE I I L+ I++ ++ L+ S G A Sbjct: 548 VFFSKLGKAYSMYVDKLPSARGYGEHITTYIPLDKKDQIISIAFVNAAGYFLIASESGKA 607 Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR 683 F++ ++I N GK +++ K + + + +++I + + Sbjct: 608 FVIPAEDLITNKITGKNIF--DADDVFKFMPFDQDHKMLAISSQGRVIIRDFASFALLKK 665 Query: 684 GKG---VRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNR--SENDLLGWLGKRGGVGS 738 GKG +RL K + + F+ + LT +AG+ + R S+N + K G G Sbjct: 666 GKGKSIIRLD--KKDKLKFIELFRANQELTL--NAGKRFIRIDSKNIETYYSDKPSGGGV 721 Query: 739 LVPKGFPRSGK 749 L+P+GF + K Sbjct: 722 LLPQGFRKITK 732 >gi|269837749|ref|YP_003319977.1| DNA gyrase, A subunit [Sphaerobacter thermophilus DSM 20745] gi|269787012|gb|ACZ39155.1| DNA gyrase, A subunit [Sphaerobacter thermophilus DSM 20745] Length = 836 Score = 439 bits (1128), Expect = e-120, Method: Compositional matrix adjust. Identities = 235/572 (41%), Positives = 355/572 (62%), Gaps = 21/572 (3%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 V+ + + + YL YA+S I +RA+PD+RDG KPV RRI++AM EMGL + F+KS Sbjct: 5 TVRQIDIDVEMRRSYLDYAMSVIVQRALPDVRDGLKPVQRRILYAMHEMGLRPQSRFRKS 64 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 A IVGEV+ HPH D +VYD+LVR+ QPF RYPL+ GQGNFG++DGDSAAA RYTEA+ Sbjct: 65 AGIVGEVLKLYHPHSDSAVYDALVRMVQPFSLRYPLVEGQGNFGSVDGDSAAAMRYTEAK 124 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 + ++E +LQ +D++ VDF+ Y+ E EPVV P+K PNLL NG +GIAVGMAT+IP HN Sbjct: 125 LAAISEEMLQDIDKNTVDFKPNYDGEAQEPVVLPAKLPNLLVNGAAGIAVGMATNIPPHN 184 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 + E+C+ + LIDNPE + + LLE I GPDFPTGG+I+ RE I +Y G+G +RAR Sbjct: 185 LAEVCDGLIMLIDNPEATSDDLLEVIQGPDFPTGGVIL-GREGIRAAYATGKGRVVIRAR 243 Query: 256 WCVEEVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314 +EE+ RG+ + I+VTE+PYQV K+ L+EKIAEL+ A RI + D+RDES ++ Sbjct: 244 THIEEMPRGNRYQIIVTELPYQVNKAALLEKIAELVKAGRIEGIHDLRDESDRTGMRMVI 303 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 R P ++ ++F + ++ F +NM L G P+V+ L +L+ +L HR+EV+ R Sbjct: 304 ELKRDAQPQRVLNALFKHTQLQQTFGVNMLALVDGTQPRVLTLRRLLQLYLDHRQEVVRR 363 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAI 431 R+ + RR IL+GL IA ++DE+I IR + + +++RF TE Q +AI Sbjct: 364 RTEHELGRARRRAHILEGLKIALDHLDEVIQTIRQSQTIESARTNLINRFGFTEVQANAI 423 Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491 L+++LR L LE ++I++E +LL E ++ LL + I E+ ++++ F Sbjct: 424 LDMQLRRLAALERHKIENEYRDLLKEIAGLEELLADPAKILAVIREELVQLRDKFGDE-- 481 Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DLSAL 543 RRT +VS + +I + V+I+NRG+++ + + ++ + Sbjct: 482 ---RRTLIQDVS---GEITDEDLIPDVSVLVMITNRGYVKRIADGTYRQQHRGGRGVTGM 535 Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575 +E D + + A T D +L + G+ + L Sbjct: 536 TLREEDGVHRIVAARTHDSLLFFTDRGRVFQL 567 >gi|30018284|ref|NP_829915.1| DNA gyrase subunit A [Bacillus cereus ATCC 14579] gi|29893824|gb|AAP07116.1| DNA gyrase subunit A [Bacillus cereus ATCC 14579] Length = 824 Score = 438 bits (1127), Expect = e-120, Method: Compositional matrix adjust. Identities = 256/704 (36%), Positives = 417/704 (59%), Gaps = 50/704 (7%) Query: 9 SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68 S+ + ++ +++ + +L YA+S I RA+PD+RDG KPVHRR+++AM+++G+ Sbjct: 3 SDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 62 Query: 69 GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128 A+KKSARIVGEVIGK HPHGD +VY+++VR+AQ F QRY L+ G GNFG++DGDSAAA Sbjct: 63 DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 122 Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188 RYTEARM++++ +++ + ++ +D++D Y+ + EP+V P++FPNLL NGT+GIAVGMA Sbjct: 123 MRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMA 182 Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248 T+IP H + E+ + LAL NP+I+I +L+EYI GPDFPT G+I+ R I +Y GRG Sbjct: 183 TNIPPHQLGEVIDGVLALSHNPDITIAELMEYIPGPDFPTAGLIL-GRSGIRRAYETGRG 241 Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308 +RA+ +EE G I+VTE+PYQV K+RLIEKIAEL+ K+I + D+RDES + Sbjct: 242 SIMLRAKVEIEEKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRN 301 Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368 ++ R + ++L+ +++ + ++T F +NM L G PQV+ L L +L H+ Sbjct: 302 GMRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGE-PQVLNLKQNLYHYLEHQ 360 Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTE 425 + V+ RR+++ ++ + R IL+GL IA ++DE+I +IR+ D K ++ RF L+E Sbjct: 361 KVVIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLMERFGLSE 420 Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485 Q AIL++RL+ L LE +I+ E +L+ ++ ++L ++ I E+ EVKE Sbjct: 421 KQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIAELKAILADEEKVLEIIREELTEVKER 480 Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSLKSHSVD----- 539 F+ +RRT E++ ++ + +I ++ I + +++ G+I+ L + + Sbjct: 481 FND-----KRRT---EITIGGMEFIEDEDLIPEQNIAITLTHNGYIKRLPASTYKTQNRG 532 Query: 540 ---LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLL 581 + + + D ++ L T D IL + GK Y LP NLL Sbjct: 533 GRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEIPEYSRTAKGLPIINLL 592 Query: 582 SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR-KGKT 640 G GE I +I + D F++ +T + + + ++F AN R G Sbjct: 593 -GVDKGEWINAIIPIREFGD--DQFLFFTTKQGVSKRTPLSSF--------ANIRTNGLI 641 Query: 641 FLKVSSEEKMKLVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSR 683 + + E+++ V +GD +VG + +LI F+ + M R Sbjct: 642 AISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGR 685 >gi|319956757|ref|YP_004168020.1| DNA gyrase subunit a [Nitratifractor salsuginis DSM 16511] gi|319419161|gb|ADV46271.1| DNA gyrase subunit A [Nitratifractor salsuginis DSM 16511] Length = 843 Score = 438 bits (1127), Expect = e-120, Method: Compositional matrix adjust. Identities = 258/612 (42%), Positives = 386/612 (63%), Gaps = 34/612 (5%) Query: 10 NTLVE--ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67 N L E E V+ V + +++ YL Y++S I RA+PD RDG KPVHRRI++AM+E+GL Sbjct: 2 NDLFENSEGVEQVKIEESIQGSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMNELGLT 61 Query: 68 FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAA 127 AA+KKSARIVG+VIGK HPHGD +VYD+LVR+AQ F R PL+ GQGNFG+IDGD+AA Sbjct: 62 HRAAYKKSARIVGDVIGKYHPHGDTAVYDALVRMAQDFSMRIPLVDGQGNFGSIDGDNAA 121 Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187 A RYTEARMT++AE +L+ +D+D VDF Y++ EP V PS+ PNLL NG++GIAVGM Sbjct: 122 AMRYTEARMTKLAEELLRDIDKDTVDFVPNYDDSLREPDVLPSRVPNLLLNGSAGIAVGM 181 Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247 AT+IP H + E+ +A L ++NPE +E+L++ + GPDFPTGG+I ++ I+++Y GR Sbjct: 182 ATNIPPHRLDELIDAHLIRLENPEAEVEELMQVLKGPDFPTGGVIF-GKKGIIDAYSTGR 240 Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-A 306 G +VRA+ +E+ + IV+ E+PYQV KSRLIE IA+L+ K+I + +IRDES Sbjct: 241 GRIKVRAKTHIEQ-HKNREAIVIDELPYQVNKSRLIETIAQLVRDKQIEGISEIRDESDR 299 Query: 307 EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366 E +R+V+ K ++ D+++ ++F + M+T F + M + + + P+V L +L ++ Sbjct: 300 EGIRVVIELKRDAM-SDIVLNNLFKSTQMQTTFGIIMLAI-VNKEPKVFTLPELLDLFIN 357 Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSL 423 HR+ V+ RR+ F ++ R IL+GL IA NIDE+I IIR ++ + + ++SRF L Sbjct: 358 HRKTVIIRRTIFDLEKARARAHILEGLKIAVDNIDEVIKIIRASADDSEARANLMSRFDL 417 Query: 424 TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483 +E Q AIL +RLR L LE +I+SEL L E ++S+L S I E+ EVK Sbjct: 418 SEIQARAILEMRLRRLTGLEIEKIESELAELRKTIEYLESILKSETMIEEIIKKELLEVK 477 Query: 484 EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD---- 539 E FS RRT E+ + +I EP+ V I++RG+I+ + + Sbjct: 478 EAFSDE-----RRT---EIVDDYDDIDIEDLIPNEPMVVTITHRGYIKRVPVKQYEKQRR 529 Query: 540 ----LSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAI 590 +A+ E D ++ ++T D ++ ++ G K Y +P G S G+A+ Sbjct: 530 GGKGKTAVTTYEDDFIERFFISNTHDTLMFVTDKGQLYWLKVYRIPEG---SRTAKGKAV 586 Query: 591 QLLIDLNHNQDI 602 LI+L+ ++ I Sbjct: 587 VNLINLDKDEKI 598 >gi|303228520|ref|ZP_07315349.1| DNA gyrase, A subunit [Veillonella atypica ACS-134-V-Col7a] gi|302516812|gb|EFL58725.1| DNA gyrase, A subunit [Veillonella atypica ACS-134-V-Col7a] Length = 821 Score = 438 bits (1127), Expect = e-120, Method: Compositional matrix adjust. Identities = 272/754 (36%), Positives = 418/754 (55%), Gaps = 51/754 (6%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 N+ V + ++ Y+ YA+S I RA+PD+RDG KPVHRRI++AM E G+ +KKS Sbjct: 10 NIHPVQIDKEMKNAYIDYAMSVIVMRALPDVRDGLKPVHRRILYAMHETGMTPNKPYKKS 69 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 ARIVG+V+GK HPHGD SVYD+ VRLAQ F RY L+ G GNFG+IDGDSAAA RYTE R Sbjct: 70 ARIVGDVLGKYHPHGDSSVYDATVRLAQDFNTRYLLVDGHGNFGSIDGDSAAAMRYTEVR 129 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 M ++ + +L +D++ VDF Y+E EP V P+K PNLL NG+SGIAVGMAT+IP HN Sbjct: 130 MAKITQEMLADIDKETVDFMPNYDESLQEPTVLPAKIPNLLINGSSGIAVGMATNIPPHN 189 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 + E+C LIDNP++++++L+ I GPDFPTG +I+ RE I ++Y GRG ++RAR Sbjct: 190 LNEVCNGLEMLIDNPDVTVDELMTQIKGPDFPTGALIL-GREGIKKAYSTGRGSVKMRAR 248 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315 +EE+ +G IVVTEIPYQV K+R+IE IA L K I + +RDES ++ Sbjct: 249 ATIEEMAKGKHKIVVTEIPYQVNKARVIETIANLSRDKVIDGITALRDESDRQGMRIVIE 308 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 + PD+++ ++ + ++ F + M L G P+V+ L +L +L HR +V+ RR Sbjct: 309 LRADVQPDIVLNKLYKHTQLQESFGVIMLALVDGH-PRVLNLKEVLGYYLDHRLDVIVRR 367 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLTENQVDAIL 432 + F + + R IL+GLLIA +IDE+IA IR+ ++ + ++ +F L+E Q AIL Sbjct: 368 TQFELNKAEARAHILEGLLIALDHIDEVIATIRSSQTDEIARNALMQKFGLSEKQAVAIL 427 Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492 ++RLR L LE +I+ E LLA E + ++L S +Q I E+ ++K+ + Sbjct: 428 DMRLRRLTGLEREKIEEEYKELLALIEDLKAILASEARQRQIIKDELEDMKKKYGDP--- 484 Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSH--------SVDLSALH 544 RR + S D + +I E + + ++ +G+I+ + ++ + + Sbjct: 485 -RRSEITIDTSDLD----VEDLIADEEMVITLTKQGYIKRMNANVYRNQHKGGAGVIGMK 539 Query: 545 FKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGH----------GEA 589 KE D + +H T + +L ++ G KAY +P + RG GE+ Sbjct: 540 TKEDDYVTQIMHVRTHNTLLFFTSTGRTYRLKAYEVPEAGSRNSRGTAMVNVLPLAVGES 599 Query: 590 IQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649 + +IDL + V F+ + VV +EE I R G + + ++ Sbjct: 600 VTTMIDLERIHENVNLFM---VTEFGVVKRTA----IEEYRNI--RRSGLNAINLDDGDR 650 Query: 650 MKLVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSR-GKGVRLQSYKDGGI---SDVICFK 704 + V+ TG+ ++G + I + + + M R GVR K G + + V+ Sbjct: 651 LISVIVTTGNQDILIGTKLGMAIRCNEEDVRLMKRAAHGVRGIKLKTGDVVVGAGVLESD 710 Query: 705 ICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGS 738 E + S R+E D + KRGG+G+ Sbjct: 711 ESEAQVFTISEEGYGKRNEADAYN-VQKRGGIGT 743 >gi|206970103|ref|ZP_03231056.1| DNA gyrase, A subunit [Bacillus cereus AH1134] gi|218231332|ref|YP_002364861.1| DNA gyrase subunit A [Bacillus cereus B4264] gi|228924239|ref|ZP_04087510.1| DNA gyrase subunit A [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228955744|ref|ZP_04117739.1| DNA gyrase subunit A [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228961758|ref|ZP_04123361.1| DNA gyrase subunit A [Bacillus thuringiensis serovar pakistani str. T13001] gi|229051163|ref|ZP_04194707.1| DNA gyrase subunit A [Bacillus cereus AH676] gi|229072959|ref|ZP_04206155.1| DNA gyrase subunit A [Bacillus cereus F65185] gi|229077282|ref|ZP_04209966.1| DNA gyrase subunit A [Bacillus cereus Rock4-2] gi|229112907|ref|ZP_04242438.1| DNA gyrase subunit A [Bacillus cereus Rock1-15] gi|229130740|ref|ZP_04259693.1| DNA gyrase subunit A [Bacillus cereus BDRD-Cer4] gi|229148044|ref|ZP_04276383.1| DNA gyrase subunit A [Bacillus cereus BDRD-ST24] gi|229153653|ref|ZP_04281829.1| DNA gyrase subunit A [Bacillus cereus m1550] gi|229181740|ref|ZP_04309063.1| DNA gyrase subunit A [Bacillus cereus 172560W] gi|229193745|ref|ZP_04320686.1| DNA gyrase subunit A [Bacillus cereus ATCC 10876] gi|296500844|ref|YP_003662544.1| DNA gyrase subunit A [Bacillus thuringiensis BMB171] gi|206734680|gb|EDZ51849.1| DNA gyrase, A subunit [Bacillus cereus AH1134] gi|218159289|gb|ACK59281.1| DNA gyrase, A subunit [Bacillus cereus B4264] gi|228589770|gb|EEK47648.1| DNA gyrase subunit A [Bacillus cereus ATCC 10876] gi|228601773|gb|EEK59271.1| DNA gyrase subunit A [Bacillus cereus 172560W] gi|228629839|gb|EEK86492.1| DNA gyrase subunit A [Bacillus cereus m1550] gi|228635469|gb|EEK91960.1| DNA gyrase subunit A [Bacillus cereus BDRD-ST24] gi|228652757|gb|EEL08642.1| DNA gyrase subunit A [Bacillus cereus BDRD-Cer4] gi|228670586|gb|EEL25899.1| DNA gyrase subunit A [Bacillus cereus Rock1-15] gi|228706026|gb|EEL58330.1| DNA gyrase subunit A [Bacillus cereus Rock4-2] gi|228710205|gb|EEL62183.1| DNA gyrase subunit A [Bacillus cereus F65185] gi|228722226|gb|EEL73627.1| DNA gyrase subunit A [Bacillus cereus AH676] gi|228797952|gb|EEM44962.1| DNA gyrase subunit A [Bacillus thuringiensis serovar pakistani str. T13001] gi|228803972|gb|EEM50596.1| DNA gyrase subunit A [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228835457|gb|EEM80827.1| DNA gyrase subunit A [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|296321896|gb|ADH04824.1| DNA gyrase subunit A [Bacillus thuringiensis BMB171] Length = 823 Score = 438 bits (1127), Expect = e-120, Method: Compositional matrix adjust. Identities = 256/704 (36%), Positives = 417/704 (59%), Gaps = 50/704 (7%) Query: 9 SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68 S+ + ++ +++ + +L YA+S I RA+PD+RDG KPVHRR+++AM+++G+ Sbjct: 2 SDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 61 Query: 69 GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128 A+KKSARIVGEVIGK HPHGD +VY+++VR+AQ F QRY L+ G GNFG++DGDSAAA Sbjct: 62 DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 121 Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188 RYTEARM++++ +++ + ++ +D++D Y+ + EP+V P++FPNLL NGT+GIAVGMA Sbjct: 122 MRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMA 181 Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248 T+IP H + E+ + LAL NP+I+I +L+EYI GPDFPT G+I+ R I +Y GRG Sbjct: 182 TNIPPHQLGEVIDGVLALSHNPDITIAELMEYIPGPDFPTAGLIL-GRSGIRRAYETGRG 240 Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308 +RA+ +EE G I+VTE+PYQV K+RLIEKIAEL+ K+I + D+RDES + Sbjct: 241 SIMLRAKVEIEEKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRN 300 Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368 ++ R + ++L+ +++ + ++T F +NM L G PQV+ L L +L H+ Sbjct: 301 GMRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGE-PQVLNLKQNLYHYLEHQ 359 Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTE 425 + V+ RR+++ ++ + R IL+GL IA ++DE+I +IR+ D K ++ RF L+E Sbjct: 360 KVVIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLMERFGLSE 419 Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485 Q AIL++RL+ L LE +I+ E +L+ ++ ++L ++ I E+ EVKE Sbjct: 420 KQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIAELKAILADEEKVLEIIREELTEVKER 479 Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSLKSHSVD----- 539 F+ +RRT E++ ++ + +I ++ I + +++ G+I+ L + + Sbjct: 480 FND-----KRRT---EITIGGMEFIEDEDLIPEQNIAITLTHNGYIKRLPASTYKTQNRG 531 Query: 540 ---LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLL 581 + + + D ++ L T D IL + GK Y LP NLL Sbjct: 532 GRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEIPEYSRTAKGLPIINLL 591 Query: 582 SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR-KGKT 640 G GE I +I + D F++ +T + + + ++F AN R G Sbjct: 592 -GVDKGEWINAIIPIREFGD--DQFLFFTTKQGVSKRTPLSSF--------ANIRTNGLI 640 Query: 641 FLKVSSEEKMKLVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSR 683 + + E+++ V +GD +VG + +LI F+ + M R Sbjct: 641 AISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGR 684 >gi|303230598|ref|ZP_07317348.1| DNA gyrase, A subunit [Veillonella atypica ACS-049-V-Sch6] gi|302514653|gb|EFL56645.1| DNA gyrase, A subunit [Veillonella atypica ACS-049-V-Sch6] Length = 821 Score = 438 bits (1127), Expect = e-120, Method: Compositional matrix adjust. Identities = 272/754 (36%), Positives = 418/754 (55%), Gaps = 51/754 (6%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 N+ V + ++ Y+ YA+S I RA+PD+RDG KPVHRRI++AM E G+ +KKS Sbjct: 10 NIHPVQIDKEMKNAYIDYAMSVIVMRALPDVRDGLKPVHRRILYAMHETGMTPNKPYKKS 69 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 ARIVG+V+GK HPHGD+SVYD+ VRLAQ F RY L+ G GNFG+IDGDSAAA RYTE R Sbjct: 70 ARIVGDVLGKYHPHGDRSVYDATVRLAQDFNTRYLLVDGHGNFGSIDGDSAAAMRYTEVR 129 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 M ++ + +L +D++ VDF Y+E EP V P+K PNLL NG+SGIAVGMAT+IP HN Sbjct: 130 MAKITQEMLADIDKETVDFMPNYDESLQEPTVLPAKIPNLLINGSSGIAVGMATNIPPHN 189 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 + E+C LIDNP++++++L+ I GPDFPTG +I+ RE I ++Y GRG ++RAR Sbjct: 190 LNEVCNGLTMLIDNPDVTVDELMTQIKGPDFPTGALIL-GREGIKKAYSTGRGSVKMRAR 248 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315 +EE+ +G IVVTEIPYQV K+R+IE IA L K I + +RDES ++ Sbjct: 249 ATIEEMAKGKHKIVVTEIPYQVNKARVIETIANLSRDKVIDGITALRDESDRQGMRIVIE 308 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 + PD+++ ++ + ++ F + M L G P+V+ L +L +L HR V+ RR Sbjct: 309 LRADVQPDIVLNKLYKHTQLQESFGVIMLALVDGH-PRVLNLKEVLGYYLDHRLNVIVRR 367 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLTENQVDAIL 432 + F + + R IL+GLLIA +IDE+IA IR+ ++ + ++ +F L+E Q AIL Sbjct: 368 TQFELNKAEARAHILEGLLIALDHIDEVIATIRSSQTDEIARNALMQKFGLSEKQAVAIL 427 Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492 ++RLR L LE +I+ E LLA E + ++L S +Q I E+ ++K+ + Sbjct: 428 DMRLRRLTGLEREKIEDEYKELLALIEDLKAILASEARQRQIIKDELDDMKKKYGDP--- 484 Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSH--------SVDLSALH 544 RR + S D + +I E + + ++ +G+I+ + ++ + + Sbjct: 485 -RRSEITIDTSDLD----VEDLIADEEMVITLTKQGYIKRMNANVYRNQHKGGAGVIGMK 539 Query: 545 FKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGH----------GEA 589 KE D + +H T + +L ++ G KAY +P + RG GE+ Sbjct: 540 TKEDDYVTQIMHVRTHNTLLFFTSTGRTYRLKAYEVPEAGSRNSRGTAMVNVLPLAVGES 599 Query: 590 IQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649 + +IDL + V F+ + VV +EE I R G + + ++ Sbjct: 600 VTTMIDLERIHENVNLFM---VTEFGVVKRTA----IEEYRNI--RRSGLNAINLDDGDR 650 Query: 650 MKLVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSR-GKGVRLQSYKDGGI---SDVICFK 704 + V+ TG+ ++G + I + + + M R GVR K G + + V+ Sbjct: 651 LISVIVTTGNQDILIGTKLGMAIRCNEEDVRLMKRAAHGVRGIKLKTGDVVVGAGVLESD 710 Query: 705 ICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGS 738 E + S R+E D + KRGG+G+ Sbjct: 711 ESEAQVFTISEEGYGKRNEADAYN-VQKRGGIGT 743 >gi|310820412|ref|YP_003952770.1| type II DNA topoisomerase subunit A [Stigmatella aurantiaca DW4/3-1] gi|309393484|gb|ADO70943.1| Type II DNA topoisomerase, A subunit [Stigmatella aurantiaca DW4/3-1] Length = 794 Score = 438 bits (1127), Expect = e-120, Method: Compositional matrix adjust. Identities = 256/690 (37%), Positives = 396/690 (57%), Gaps = 25/690 (3%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM-SEMGLDFGAAFK 73 EN + L RYL YALS I RA+PD+RDG KPV RR+++ M + L A ++ Sbjct: 35 ENFQPAPLAEEARRRYLNYALSVITSRALPDVRDGLKPVQRRVLYGMYHDHRLTQDAKYQ 94 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSA++VG ++G+ HPHGD S+YD+LVRLAQ F RYPL+ G GNFG++DGD+AAA RYTE Sbjct: 95 KSAKVVGTIMGQYHPHGDASIYDALVRLAQDFSLRYPLVDGHGNFGSLDGDAAAAMRYTE 154 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 R+ ++ +L + + V FR Y+ SEP+V PS+ P LL NGT+GIAVGMAT+IP Sbjct: 155 CRLAGISGEMLTELGKKTVGFRPNYDGTLSEPIVIPSRLPQLLMNGTTGIAVGMATNIPP 214 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 H++ E+C+A ALI+N ++++ L++++ GPDFPTGG I+ S+ + E Y G+G R+R Sbjct: 215 HHLGELCDALAALIENGNLAVKDLMKFVKGPDFPTGGQILNSKAELREIYETGQGSVRIR 274 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313 + +E+V +G I++T IPY V KS L+ KI +L+ +++PLL D+RDES ++VRIVL Sbjct: 275 GEYALEDVKKGGQQIIITSIPYTVNKSTLVSKIGDLVRERKLPLLLDVRDESTKEVRIVL 334 Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQV-----MPLDGILKEWLAHR 368 K R P+L+M ++ + ++T F +N+ L P+V + L IL+ +L R Sbjct: 335 EFK-RDASPELVMAYLYKHTPLQTNFGVNLTCLVPTDNPEVGAPKRLDLKSILQYFLDFR 393 Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR----NEDKPKPVMVSRFSLT 424 EV+ +R + + +RV IL+G Y +DE+I IIR +D K +M +RF L Sbjct: 394 FEVVTKRFQHELGELQKRVHILEGFEKVYDALDEMIRIIRASEGKQDAAKKLM-ARFKLD 452 Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484 E QVDAIL ++L L +LE I+ EL E ++I+ +L ++ W + E+ E+K Sbjct: 453 EVQVDAILEMKLYKLARLEILVIQEELKQKRLEVKRIEGILKDKRKLWGTVKDELAEIKA 512 Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH 544 ++ +RRT + + A I E VV++ GWI+ ++ D S Sbjct: 513 TYND-----KRRTRIGGAGSEEVEFSEDAFIVDEDAHVVLTRDGWIKRVREVK-DPSTTR 566 Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVT 604 +EGD++ L ++L S G AY ++ + G+G+ +Q L + + IV Sbjct: 567 LREGDAVMTVLAGSLKSNLVLFSNFGAAYVTRFNDVPASTGYGDPVQKLFKFDDGERIVG 626 Query: 605 AFVYDSTC----KLLVVSSKGNAFIVE-ESEIIANTRKGKTFLKVSSEEKMKLVVKV-TG 658 A DS KL+ V+ G E + +TR G+ + K +++ V V Sbjct: 627 ALSLDSRLPRPQKLVAVTKDGLGLRFPLEGHVEVSTRSGRRYAKTGEGDEIIGVQPVGEK 686 Query: 659 DHVAVVGENRKLLIFSIDQIPEMS-RGKGV 687 D +AV+ E + ++ E++ GKGV Sbjct: 687 DLLAVLTERTYATVCRAAEVNELAGPGKGV 716 >gi|218895147|ref|YP_002443558.1| DNA gyrase, A subunit [Bacillus cereus G9842] gi|228905438|ref|ZP_04069393.1| DNA gyrase subunit A [Bacillus thuringiensis IBL 4222] gi|228968647|ref|ZP_04129630.1| DNA gyrase subunit A [Bacillus thuringiensis serovar sotto str. T04001] gi|218544417|gb|ACK96811.1| DNA gyrase, A subunit [Bacillus cereus G9842] gi|228791076|gb|EEM38694.1| DNA gyrase subunit A [Bacillus thuringiensis serovar sotto str. T04001] gi|228854258|gb|EEM98961.1| DNA gyrase subunit A [Bacillus thuringiensis IBL 4222] Length = 823 Score = 438 bits (1127), Expect = e-120, Method: Compositional matrix adjust. Identities = 256/704 (36%), Positives = 417/704 (59%), Gaps = 50/704 (7%) Query: 9 SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68 S+ + ++ +++ + +L YA+S I RA+PD+RDG KPVHRR+++AM+++G+ Sbjct: 2 SDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 61 Query: 69 GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128 A+KKSARIVGEVIGK HPHGD +VY+++VR+AQ F QRY L+ G GNFG++DGDSAAA Sbjct: 62 DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 121 Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188 RYTEARM++++ +++ + ++ +D++D Y+ + EP+V P++FPNLL NGT+GIAVGMA Sbjct: 122 MRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMA 181 Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248 T+IP H + E+ + LAL NP+I+I +L+EYI GPDFPT G+I+ R I +Y GRG Sbjct: 182 TNIPPHQLGEVIDGVLALSHNPDITIAELMEYIPGPDFPTSGLIL-GRSGIRRAYETGRG 240 Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308 +RA+ +EE G I+VTE+PYQV K+RLIEKIAEL+ K+I + D+RDES + Sbjct: 241 SIMLRAKVEIEEKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRN 300 Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368 ++ R + ++L+ +++ + ++T F +NM L G PQV+ L L +L H+ Sbjct: 301 GMRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGE-PQVLNLKQNLYHYLEHQ 359 Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTE 425 + V+ RR+++ ++ + R IL+GL IA ++DE+I +IR+ D K ++ RF L+E Sbjct: 360 KVVIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLMERFGLSE 419 Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485 Q AIL++RL+ L LE +I+ E +L+ ++ ++L ++ I E+ EVKE Sbjct: 420 KQAQAILDMRLQRLTGLEREKIEQEYQDLMNLIAELKAILADEEKVLEIIREELTEVKER 479 Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSLKSHSVD----- 539 F+ +RRT E++ ++ + +I ++ I + +++ G+I+ L + + Sbjct: 480 FND-----KRRT---EITIGGMEFIEDEDLIPEQNIAITLTHNGYIKRLPASTYKTQNRG 531 Query: 540 ---LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLL 581 + + + D ++ L T D IL + GK Y LP NLL Sbjct: 532 GRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEIPEYSRTAKGLPIINLL 591 Query: 582 SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR-KGKT 640 G GE I +I + D F++ +T + + + ++F AN R G Sbjct: 592 -GVDKGEWINAIIPIREFGD--DQFLFFTTKQGISKRTPLSSF--------ANIRTNGLI 640 Query: 641 FLKVSSEEKMKLVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSR 683 + + E+++ V +GD +VG + +LI F+ + M R Sbjct: 641 AISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGR 684 >gi|169335584|ref|ZP_02862777.1| hypothetical protein ANASTE_01999 [Anaerofustis stercorihominis DSM 17244] gi|169258322|gb|EDS72288.1| hypothetical protein ANASTE_01999 [Anaerofustis stercorihominis DSM 17244] Length = 822 Score = 438 bits (1127), Expect = e-120, Method: Compositional matrix adjust. Identities = 255/686 (37%), Positives = 417/686 (60%), Gaps = 28/686 (4%) Query: 26 LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85 ++ Y+ YA+S I RA+PD+RDG KPVHRRI+++MSE+ L + ++KSARIVG+ +GK Sbjct: 23 MQTSYIDYAMSVIVGRALPDVRDGLKPVHRRILYSMSELNLSYDKPYRKSARIVGDTMGK 82 Query: 86 LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145 HPHGD S+YD++VRLAQ F RYPL+ G GNFG+IDGDS AA RYTEA+MT++ +L+ Sbjct: 83 YHPHGDSSIYDAMVRLAQDFSTRYPLVDGHGNFGSIDGDSQAAMRYTEAKMTKMTGEMLR 142 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 + ++ VD+ ++E EPVV PS+FPNLL NG++GIAVGMAT+IP HN++E+ +A +A Sbjct: 143 DISKETVDYAPNFDETLKEPVVLPSRFPNLLVNGSNGIAVGMATNIPPHNLREVVDAIIA 202 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265 LI+NP I I L++Y+ GPDFPTGGII+ + I +Y GRG ++R++ +EE+ + Sbjct: 203 LIENPNIEINDLIKYVKGPDFPTGGIIM-GKTGIYNAYTTGRGRIKLRSKTHIEEISKKR 261 Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325 IVVTEIPY V K++++EKIA+L+ K++ + DIRDES + V + ++ ++ Sbjct: 262 QRIVVTEIPYMVNKAKMVEKIADLVRDKKVVGISDIRDESDRNGIRVAIDLRKDVNASII 321 Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385 + ++ + ++ F + +N+ + P+V+ L IL +L H+++++ RR+ + ++ Sbjct: 322 LNQLYKYTQLQDTFSV-INLALVDNQPKVLNLKEILVHYLNHQKDIIVRRTEYDLKKAKA 380 Query: 386 RVEILKGLLIAYLNIDEIIAIIR-NEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEE 444 R I++GLLIA NIDEII IIR + + + ++ RF L+E Q AI+++RLR L+ LE Sbjct: 381 RAHIVEGLLIALDNIDEIIKIIRASYNDAEEKLMERFDLSEVQAKAIVDMRLRRLQGLER 440 Query: 445 YQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSR 504 ++++E LL E ++S+L S + + I E+ E+K+ + RRT F EV Sbjct: 441 EKLENEYAELLKTIEYLESVLASDELVMSIIKEELSEIKDKYGDE-----RRTAF-EVD- 493 Query: 505 ADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD--------LSALHFKEGDSLKIALH 556 D+ + +IE+E I V I++ G+++ L + + ++AL +E D +K Sbjct: 494 -DEDFDMEDLIEEEDIVVTITHVGYVKRLPASTYKTQKRGGKGVTALSTRENDFVKHLFF 552 Query: 557 AHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK- 613 T I+ + GK Y L + S G AI L+ L+ + I TA + K Sbjct: 553 TTTHHYIMFFTNKGKVYRLKGYEIPDASRIAKGTAIVNLLALDPGEKI-TAVIPIKEFKD 611 Query: 614 --LLVVSSKGNAF-IVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKL 670 LV++++ F +E ++ + G + ++ ++++ V G+ ++G ++ L Sbjct: 612 DEYLVMATRNGVFKKTSLTEYDSSRKNGIVAINLAEDDELIGVSLTDGNQNIILGTHKGL 671 Query: 671 LI-FSIDQIPEMSR-GKGVRLQSYKD 694 I F+ + + R KGV+ S KD Sbjct: 672 AIKFNEADVRAIGRVSKGVKGISLKD 697 >gi|219849213|ref|YP_002463646.1| DNA gyrase subunit A [Chloroflexus aggregans DSM 9485] gi|219543472|gb|ACL25210.1| DNA gyrase, A subunit [Chloroflexus aggregans DSM 9485] Length = 824 Score = 438 bits (1127), Expect = e-120, Method: Compositional matrix adjust. Identities = 240/579 (41%), Positives = 360/579 (62%), Gaps = 32/579 (5%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 V+ VS+ + YL+YA+S I RA+PD RDG KPV RRI++ M +MG +KKSA Sbjct: 6 VRPVSITNEMRTAYLSYAMSVIVSRALPDARDGLKPVQRRILYGMWDMGFRSNQPYKKSA 65 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 RIVG+V+GK+HPHGD +VYD+L R+AQP+ RYPLI GQGNFG+IDGD AA RYTEAR+ Sbjct: 66 RIVGDVLGKMHPHGDSAVYDALARMAQPWSMRYPLIDGQGNFGSIDGDPPAAMRYTEARL 125 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 +AE +L +D+D VDFRD ++ EPVV P+ PNLL NG SGIAVGMAT+IP HN+ Sbjct: 126 APIAEELLSEIDKDTVDFRDNFDGSYREPVVLPAILPNLLLNGASGIAVGMATNIPPHNL 185 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+C+A LID+PE ++E+L+E I GPDFPT G+I+ + E I+ +Y GRG +RA+ Sbjct: 186 GELCDAISYLIDHPEATVEELMEIIPGPDFPTAGLILGT-EGILAAYSTGRGQITLRAKT 244 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFP 315 +EE GRG++ IVVTE+PYQV K+RL E+IAEL+ ++I + D+RDES + +R+V+ Sbjct: 245 HIEEAGRGAYMIVVTELPYQVNKARLQERIAELVKDRKIEGIRDVRDESDRNGMRLVILL 304 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVL-SMGRVPQVMPLDGILKEWLAHRREVLFR 374 K + P ++ +++ + M+T F +NM L GR P+V+ L +L+E++ HR+EV+ R Sbjct: 305 KQDA-QPKKVLNALYKHTQMQTTFGINMLALVEHGRQPRVLTLKRLLQEYINHRQEVIRR 363 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAI 431 R+ F + R IL+GL IA N+D +I IR+ + + ++ FSLTE Q AI Sbjct: 364 RTEFDLARARERAHILEGLKIALDNLDAVIQTIRDSRTAESARNNLMRNFSLTERQAQAI 423 Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491 L L+LR L LE +I+ E ++ +++ +L + ++ + I ++ +KE + Sbjct: 424 LELQLRRLAALERQKIEEEYREVIKLIAELEDILANPRKVLHLIKEDLSRLKEKYGDP-- 481 Query: 492 LGRRRTTFC-----EVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSV 538 RRT EVS D +I + + +++RG+I R+ + Sbjct: 482 ---RRTRIIPDVTGEVSDED-------LIPDVRVMITLTDRGYIKRQLPDAYRTQRRGGR 531 Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPA 577 + + +E D ++ L ++ D +L + GK Y + A Sbjct: 532 GIKGMLTREQDIVRHLLTCNSLDNLLFFTDRGKVYQIKA 570 >gi|326937803|gb|AEA13699.1| DNA gyrase subunit A [Bacillus thuringiensis serovar chinensis CT-43] Length = 816 Score = 438 bits (1126), Expect = e-120, Method: Compositional matrix adjust. Identities = 256/704 (36%), Positives = 417/704 (59%), Gaps = 50/704 (7%) Query: 9 SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68 S+ + ++ +++ + +L YA+S I RA+PD+RDG KPVHRR+++AM+++G+ Sbjct: 2 SDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 61 Query: 69 GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128 A+KKSARIVGEVIGK HPHGD +VY+++VR+AQ F QRY L+ G GNFG++DGDSAAA Sbjct: 62 DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 121 Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188 RYTEARM++++ +++ + ++ +D++D Y+ + EP+V P++FPNLL NGT+GIAVGMA Sbjct: 122 MRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMA 181 Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248 T+IP H + E+ + LAL NP+I+I +L+EYI GPDFPT G+I+ R I +Y GRG Sbjct: 182 TNIPPHQLGEVIDGVLALSHNPDITIAELMEYIPGPDFPTSGLIL-GRSGIRRAYETGRG 240 Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308 +RA+ +EE G I+VTE+PYQV K+RLIEKIAEL+ K+I + D+RDES + Sbjct: 241 SIMLRAKVEIEEKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRN 300 Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368 ++ R + ++L+ +++ + ++T F +NM L G PQV+ L L +L H+ Sbjct: 301 GMRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGE-PQVLNLKQNLYHYLEHQ 359 Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTE 425 + V+ RR+++ ++ + R IL+GL IA ++DE+I +IR+ D K ++ RF L+E Sbjct: 360 KVVIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLMERFGLSE 419 Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485 Q AIL++RL+ L LE +I+ E +L+ ++ ++L ++ I E+ EVKE Sbjct: 420 KQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIAELKAILADEEKVLEIIREELTEVKER 479 Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSLKSHSVD----- 539 F+ +RRT E++ ++ + +I ++ I + +++ G+I+ L + + Sbjct: 480 FND-----KRRT---EITIGGMEFIEDEDLIPEQNIAITLTHNGYIKRLPASTYKTQNRG 531 Query: 540 ---LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLL 581 + + + D ++ L T D IL + GK Y LP NLL Sbjct: 532 GRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEIPEYSRTAKGLPIINLL 591 Query: 582 SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR-KGKT 640 G GE I +I + D F++ +T + + + ++F AN R G Sbjct: 592 -GVDKGEWINAIIPIREFGD--DQFLFFTTKQGISKRTPLSSF--------ANIRTNGLI 640 Query: 641 FLKVSSEEKMKLVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSR 683 + + E+++ V +GD +VG + +LI F+ + M R Sbjct: 641 AISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGR 684 >gi|229014661|ref|ZP_04171775.1| DNA gyrase subunit A [Bacillus mycoides DSM 2048] gi|229170198|ref|ZP_04297884.1| DNA gyrase subunit A [Bacillus cereus AH621] gi|228613299|gb|EEK70438.1| DNA gyrase subunit A [Bacillus cereus AH621] gi|228746672|gb|EEL96561.1| DNA gyrase subunit A [Bacillus mycoides DSM 2048] Length = 823 Score = 437 bits (1125), Expect = e-120, Method: Compositional matrix adjust. Identities = 256/703 (36%), Positives = 414/703 (58%), Gaps = 48/703 (6%) Query: 9 SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68 S+ + ++ +++ + +L YA+S I RA+PD+RDG KPVHRR+++AM+++G+ Sbjct: 2 SDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 61 Query: 69 GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128 A+KKSARIVGEVIGK HPHGD +VY+++VR+AQ F QRY L+ G GNFG++DGDSAAA Sbjct: 62 DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 121 Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188 RYTEARM++++ +++ + ++ +D++D Y+ + EPVV P++FPNLL NGT+GIAVGMA Sbjct: 122 MRYTEARMSKISMELIRDITKNTIDYQDNYDGSEREPVVLPARFPNLLVNGTTGIAVGMA 181 Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248 T+IP H + E+ + LAL NP+I+I +L+EYI GPDFPT G+I+ R I +Y GRG Sbjct: 182 TNIPPHQLGEVIDGVLALSHNPDITIAELMEYIPGPDFPTSGLIL-GRSGIRRAYETGRG 240 Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308 +RA+ +EE G I+VTE+PYQV K+RLIEKIAEL+ K+I + D+RDES + Sbjct: 241 SIILRAKVEIEEKANGKQTIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRN 300 Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368 ++ R + ++L+ +++ + ++T F +NM L G PQV+ L L +L H+ Sbjct: 301 GMRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGE-PQVLNLKQNLYYYLEHQ 359 Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTE 425 + V+ RR+++ ++ + R IL+GL IA ++DE+I +IR+ D K ++ RF L+E Sbjct: 360 KVVIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLMERFGLSE 419 Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485 Q AIL++RL+ L LE +I+ E +L+ ++ ++L ++ I E+ EVKE Sbjct: 420 KQAQAILDMRLQRLTGLEREKIEQEYQDLMKIIAELKAILADEEKVLEIIREELAEVKER 479 Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD------ 539 F+ +RRT +A + +I ++ I + +++ G+I+ L + + Sbjct: 480 FND-----KRRTEIT--IGGMEAIEDEDLIPEQNIAITLTHNGYIKRLPASTYKTQNRGG 532 Query: 540 --LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLLS 582 + + + D ++ L T D IL + GK Y +P NLL Sbjct: 533 RGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEIPEYSRTAKGIPIINLL- 591 Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR-KGKTF 641 G GE I +I + D F++ +T + + + ++F AN R G Sbjct: 592 GVDKGEWINAIIPIREFGD--DQFLFFTTKQGISKRTPLSSF--------ANIRTNGLIA 641 Query: 642 LKVSSEEKMKLVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSR 683 + + E+++ V +GD +VG + +LI F+ + M R Sbjct: 642 ISLREEDELISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGR 684 >gi|228911334|ref|ZP_04075138.1| DNA gyrase subunit A [Bacillus thuringiensis IBL 200] gi|228848352|gb|EEM93202.1| DNA gyrase subunit A [Bacillus thuringiensis IBL 200] Length = 822 Score = 437 bits (1125), Expect = e-120, Method: Compositional matrix adjust. Identities = 256/704 (36%), Positives = 417/704 (59%), Gaps = 50/704 (7%) Query: 9 SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68 S+ + ++ +++ + +L YA+S I RA+PD+RDG KPVHRR+++AM+++G+ Sbjct: 2 SDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 61 Query: 69 GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128 A+KKSARIVGEVIGK HPHGD +VY+++VR+AQ F QRY L+ G GNFG++DGDSAAA Sbjct: 62 DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 121 Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188 RYTEARM++++ +++ + ++ +D++D Y+ + EP+V P++FPNLL NGT+GIAVGMA Sbjct: 122 MRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMA 181 Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248 T+IP H + E+ + LAL NP+I+I +L+EYI GPDFPT G+I+ R I +Y GRG Sbjct: 182 TNIPPHQLGEVIDGVLALSHNPDITIAELMEYIPGPDFPTSGLIL-GRSGIRRAYETGRG 240 Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308 +RA+ +EE G I+VTE+PYQV K+RLIEKIAEL+ K+I + D+RDES + Sbjct: 241 SIMLRAKVEIEEKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRN 300 Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368 ++ R + ++L+ +++ + ++T F +NM L G PQV+ L L +L H+ Sbjct: 301 GMRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGE-PQVLNLKQNLYHYLEHQ 359 Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTE 425 + V+ RR+++ ++ + R IL+GL IA ++DE+I +IR+ D K ++ RF L+E Sbjct: 360 KVVIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLMERFGLSE 419 Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485 Q AIL++RL+ L LE +I+ E +L+ ++ ++L ++ I E+ EVKE Sbjct: 420 KQAQAILDMRLQRLTGLEREKIEQEYQDLMNLIAELKAILADEEKVLEIIREELIEVKER 479 Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSLKSHSVD----- 539 F+ +RRT E++ ++ + +I ++ I + +++ G+I+ L + + Sbjct: 480 FND-----KRRT---EITIGGMEFIEDEDLIPEQNIAITLTHNGYIKRLPASTYKTQNRG 531 Query: 540 ---LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLL 581 + + + D ++ L T D IL + GK Y LP NLL Sbjct: 532 GRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEIPEYSRTAKGLPIINLL 591 Query: 582 SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR-KGKT 640 G GE I +I + D F++ +T + + + ++F AN R G Sbjct: 592 -GVDKGEWINAIIPIREFGD--DQFLFFTTKQGISKRTPLSSF--------ANIRTNGLI 640 Query: 641 FLKVSSEEKMKLVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSR 683 + + E+++ V +GD +VG + +LI F+ + M R Sbjct: 641 AISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGR 684 >gi|206889694|ref|YP_002247895.1| DNA gyrase, A subunit [Thermodesulfovibrio yellowstonii DSM 11347] gi|206741632|gb|ACI20689.1| DNA gyrase, A subunit [Thermodesulfovibrio yellowstonii DSM 11347] Length = 826 Score = 437 bits (1124), Expect = e-120, Method: Compositional matrix adjust. Identities = 268/668 (40%), Positives = 397/668 (59%), Gaps = 60/668 (8%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 NV V++ ++ YL YA+S I RA+PD+RDG KPV RRI++AM GL G + K Sbjct: 3 NVLKVNIEEEMKTSYLDYAMSVIIGRALPDVRDGLKPVQRRILYAMFREGLLAGKKYSKC 62 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 A +VGEV+ K HPHGDQ+VYD+LVRLAQ F RYPLI GQGNFG+IDGD AAYRYTEAR Sbjct: 63 AGVVGEVLKKYHPHGDQAVYDALVRLAQDFNMRYPLIDGQGNFGSIDGDPPAAYRYTEAR 122 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 +T++AE +LQ +D++ V F ++ EP+V P++ PNLL NG+SGIAVGMAT+IP HN Sbjct: 123 LTKIAEELLQDIDKETVPFAPNFDATTQEPLVLPARIPNLLINGSSGIAVGMATNIPPHN 182 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 + EI +A + L++NP+IS+E+LLE++ GPDFPTGG I E I + Y GRG R+RA+ Sbjct: 183 LNEIVDALIKLLENPQISMEELLEFVKGPDFPTGGTIY-GIEGIRDLYLTGRGLIRIRAK 241 Query: 256 WCVEEVGRGSWC------------------IVVTEIPYQVQKSRLIEKIAELIIAKRIPL 297 +E +G I++TEIPYQV K++LIEKIAEL+ K+I Sbjct: 242 VKIERETKGKKSKEVPLFEIEPEGKAFKEKIIITEIPYQVNKAKLIEKIAELVREKKIEG 301 Query: 298 LEDIRDESA-EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMP 356 + +IRDES E +R+VL K + P++++ +++ + MET F + + G+ P+++ Sbjct: 302 ITEIRDESNREGIRVVLELKKGEM-PEVVLNNLYKHTQMETTFGGILLAIVDGQ-PRILN 359 Query: 357 LDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP--- 413 L L E+L HR++V+ +R++F ++ + + IL GL IA N+DE+I+IIR P Sbjct: 360 LKEALWEFLKHRKDVVIKRTAFDLKKAEHQAHILLGLKIAVENLDEVISIIRKSQNPEEA 419 Query: 414 KPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWN 473 K +++RF LTE Q AIL++RL+ L LE +I + + +L E E++ ++L S + N Sbjct: 420 KMKLMNRFPLTEIQAQAILDMRLQRLTGLEREKIIQDYETILKEIERLKAILESEELVRN 479 Query: 474 QIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--- 530 I E+ E+K+ + G R T E+ K + +I +E + + +++ G+I Sbjct: 480 IIKDELIEIKQKY------GDERKT--EIVTETKEINIEDLITQEDMVITLTHLGYIKRT 531 Query: 531 -----RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR 584 RS K L+ + D L+ L T D I+ S G+ Y L + +GR Sbjct: 532 SLSDYRSQKRGGKGLTPMETVTDDYLESVLIGSTHDHIMFFSNFGRVYCLKVYQIPEAGR 591 Query: 585 -GHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLK 643 G+AI L+ L + I TA V CK +EE ++ T+KG F+K Sbjct: 592 VSKGKAIVNLLPLQEGEKITTALV----CK-----------DIEEGYLMMFTKKG--FVK 634 Query: 644 VSSEEKMK 651 +S E+ K Sbjct: 635 KTSLEEFK 642 >gi|163938019|ref|YP_001642903.1| DNA gyrase subunit A [Bacillus weihenstephanensis KBAB4] gi|229065154|ref|ZP_04200447.1| DNA gyrase subunit A [Bacillus cereus AH603] gi|229136320|ref|ZP_04265067.1| DNA gyrase subunit A [Bacillus cereus BDRD-ST196] gi|163860216|gb|ABY41275.1| DNA gyrase, A subunit [Bacillus weihenstephanensis KBAB4] gi|228647192|gb|EEL03280.1| DNA gyrase subunit A [Bacillus cereus BDRD-ST196] gi|228716183|gb|EEL67902.1| DNA gyrase subunit A [Bacillus cereus AH603] Length = 823 Score = 437 bits (1124), Expect = e-120, Method: Compositional matrix adjust. Identities = 256/703 (36%), Positives = 414/703 (58%), Gaps = 48/703 (6%) Query: 9 SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68 S+ + ++ +++ + +L YA+S I RA+PD+RDG KPVHRR+++AM+++G+ Sbjct: 2 SDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 61 Query: 69 GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128 A+KKSARIVGEVIGK HPHGD +VY+++VR+AQ F QRY L+ G GNFG++DGDSAAA Sbjct: 62 DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 121 Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188 RYTEARM++++ +++ + ++ +D++D Y+ + EPVV P++FPNLL NGT+GIAVGMA Sbjct: 122 MRYTEARMSKISMELIRDITKNTIDYQDNYDGSEREPVVLPARFPNLLVNGTTGIAVGMA 181 Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248 T+IP H + E+ + LAL NP+I+I +L+EYI GPDFPT G+I+ R I +Y GRG Sbjct: 182 TNIPPHQLGEVIDGVLALSHNPDITIAELMEYIPGPDFPTSGLIL-GRSGIRRAYETGRG 240 Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308 +RA+ +EE G I+VTE+PYQV K+RLIEKIAEL+ K+I + D+RDES + Sbjct: 241 SIILRAKVEIEERANGKQTIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRN 300 Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368 ++ R + ++L+ +++ + ++T F +NM L G PQV+ L L +L H+ Sbjct: 301 GMRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGE-PQVLNLKQNLYYYLEHQ 359 Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTE 425 + V+ RR+++ ++ + R IL+GL IA ++DE+I +IR+ D K ++ RF L+E Sbjct: 360 KVVIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLMERFGLSE 419 Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485 Q AIL++RL+ L LE +I+ E +L+ ++ ++L ++ I E+ EVKE Sbjct: 420 KQAQAILDMRLQRLTGLEREKIEQEYQDLMKIIAELKAILADEEKVLEIIREELAEVKER 479 Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD------ 539 F+ +RRT +A + +I ++ I + +++ G+I+ L + + Sbjct: 480 FND-----KRRTEIT--IGGMEAIEDEDLIPEQNIAITLTHNGYIKRLPASTYKTQNRGG 532 Query: 540 --LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLLS 582 + + + D ++ L T D IL + GK Y +P NLL Sbjct: 533 RGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEIPEYSRTAKGIPIINLL- 591 Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR-KGKTF 641 G GE I +I + D F++ +T + + + ++F AN R G Sbjct: 592 GVDKGEWINAIIPIREFGD--DQFLFFTTKQGISKRTPLSSF--------ANIRTNGLIA 641 Query: 642 LKVSSEEKMKLVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSR 683 + + E+++ V +GD +VG + +LI F+ + M R Sbjct: 642 ISLREEDELISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGR 684 >gi|222824141|ref|YP_002575715.1| DNA gyrase, subunit A [Campylobacter lari RM2100] gi|222539363|gb|ACM64464.1| DNA gyrase, subunit A [Campylobacter lari RM2100] Length = 858 Score = 437 bits (1124), Expect = e-120, Method: Compositional matrix adjust. Identities = 250/607 (41%), Positives = 387/607 (63%), Gaps = 32/607 (5%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 + +++ + + +++ YL Y++S I RA+PD RDG KPVHRRI++AM+++G+ +A+K Sbjct: 8 DSDIENIDIESSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMNDLGVGSRSAYK 67 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSARIVG+VIGK HPHGD +VYD+LVR+AQ F RYP + GQGNFG+IDGD AAA RYTE Sbjct: 68 KSARIVGDVIGKYHPHGDVAVYDALVRMAQDFSMRYPSVDGQGNFGSIDGDGAAAMRYTE 127 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 ARMT +AE +L+ +D+D VDF Y++ SEP V P++ PNLL NG+SGIAVGMAT+IP Sbjct: 128 ARMTILAEELLRDIDKDTVDFVPNYDDSMSEPDVLPARVPNLLLNGSSGIAVGMATNIPP 187 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 H++ E+ + L LIDN E S+E+++++I GPDFPTGGII ++ I+E+YR GRG +VR Sbjct: 188 HSLNELIDGLLYLIDNKESSLEEIMQFIKGPDFPTGGIIY-GKKGIIEAYRTGRGRVKVR 246 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIV 312 A+ +E+ IV+ E+PYQ K+RLIE+IA+L K+I + ++RDES E +R+V Sbjct: 247 AKTHIEKRANKD-IIVIDELPYQTNKARLIEQIADLAKEKQIEGIAEVRDESDREGIRVV 305 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 + K ++ ++++ ++F + ME+ F + M + + P+V L +LK +L HR+ V+ Sbjct: 306 IELKRDAM-SEIVLNNLFKSTTMESTFGVIMLAIH-NKEPKVFSLIELLKLFLNHRKTVI 363 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE-DKP--KPVMVSRFSLTENQVD 429 RR+ F +Q R IL+GL IA NIDE+IA+I+N D P K +++ +F L+E Q + Sbjct: 364 IRRTIFELQKARARAHILEGLKIALDNIDEVIALIKNSPDNPTAKNLLMQKFGLSELQSN 423 Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489 AIL+++L L LE +I +EL LLAE E++D +L S N I E++E++ F Sbjct: 424 AILDMKLGRLTGLEREKIDNELKELLAEIERLDEILKSEALLENLIKDELKEIRSKF--- 480 Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS-------- 541 D+ R ++ + +I E + V I++RG+I+ + S + Sbjct: 481 -DVPR----ITQIEDDYDDIDIEDLIPNENMVVTITHRGYIKRVPSKQYEKQKRGGKGKV 535 Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDL 596 A+ + D ++ A+T D ++ ++ G K Y +P G S G+A+ LI+L Sbjct: 536 AVTTYDDDFIENFFTANTHDTLMFVTDRGQLYWLKVYKIPEG---SRTAKGKAVVNLINL 592 Query: 597 NHNQDIV 603 ++ I+ Sbjct: 593 QADEKIM 599 >gi|328676554|gb|AEB27424.1| Topoisomerase IV subunit A [Francisella cf. novicida Fx1] Length = 742 Score = 437 bits (1124), Expect = e-120, Method: Compositional matrix adjust. Identities = 260/731 (35%), Positives = 417/731 (57%), Gaps = 24/731 (3%) Query: 27 EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86 E+ YL Y++ I +RA+P + DG KPV RRII+AMSE+GL + +KKSAR VG+V+GK Sbjct: 18 EQAYLNYSMYVILDRALPHISDGLKPVQRRIIYAMSEIGLSHLSKYKKSARTVGDVLGKY 77 Query: 87 HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQVAELILQ 145 HPHGD + Y+++V +AQ F RYP I GQGN+G+ID S AA RYTE+R+++ A L+L Sbjct: 78 HPHGDSACYEAMVLMAQDFSYRYPFIDGQGNWGSIDDPKSFAAMRYTESRLSKYAVLLLD 137 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 + + VD+ ++ EP + P++ PN+L NG GIAVGM+T IP HN+ EI A L Sbjct: 138 ELKKGTVDWVKNFDGTMDEPKLLPAQVPNILLNGAMGIAVGMSTYIPPHNITEIINACLQ 197 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265 L+ P +IE++LE + PD+P G I+ S+E I + Y+ G G R +A + + G Sbjct: 198 LLSKPNSTIEEILEIVEAPDYPGGANIISSKEEIADVYKSGNGSIRQQAVYEYDNHGN-- 255 Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES--AEDVRIVLFPKNRSLDPD 323 +V+T++P+QV + ++E+IA + ++I +++I+DES E V+IVL+ + Sbjct: 256 --VVITKLPHQVSSAAVMEQIANELKQQKITWIKNIQDESDDKEPVKIVLYSATTKSNIK 313 Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383 +M + +D+E F +NMN++ + PQV L IL EWL +R+ L RR + + Sbjct: 314 KIMGHLLATTDLEKSFRVNMNMIGLDNRPQVKNLLDILNEWLEYRKHTLRRRLQTSLDKV 373 Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLE 443 R+ IL+GLLIA+LNIDE+I IIRN D P + +RF+L+E Q +AILN+RLR L K+E Sbjct: 374 LDRLHILEGLLIAFLNIDEVIDIIRNYDDPSGELQTRFTLSEIQAEAILNIRLRKLAKIE 433 Query: 444 EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVS 503 E +IK E L E+E ++ LNS + N + E +++ D G R + V+ Sbjct: 434 EIEIKKEQKELQKERELLEGYLNSEVKFRNLMKKEFKQI------LIDFGDSRRSKIIVA 487 Query: 504 RADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRI 563 +A ++ ++ E +T+++S GWIR K ++D + L +K D + ++ ++ Sbjct: 488 EKAQALEEKDLMPSEKVTIILSKAGWIRCAKGENIDPAGLSYKPEDKPFLVTTGNSNIKL 547 Query: 564 LLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNA 623 + S GKAY++ L S RG+GE I I L+ I++ ++ L+ S G A Sbjct: 548 VFFSKLGKAYSMYVDKLPSARGYGEHITTYIPLDKQDQIISIAFVNAAGYFLIASESGKA 607 Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR 683 F++ ++I N GK +++ K + + + +++I + + Sbjct: 608 FVIPAEDLITNKVTGKNIF--DADDVFKFMPFDQDHKMLAISSQGRVIIRDFASFALLKK 665 Query: 684 GKG---VRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNR--SENDLLGWLGKRGGVGS 738 GKG +RL K + + F+ + LT +AG+ + R S+N + K G G Sbjct: 666 GKGKSIIRLD--KKDKLKFIELFRANQELTL--NAGKRFIRIDSKNIETYYSDKPSGGGV 721 Query: 739 LVPKGFPRSGK 749 L+P+GF + K Sbjct: 722 LLPQGFRKITK 732 >gi|257065526|ref|YP_003151782.1| DNA gyrase, A subunit [Anaerococcus prevotii DSM 20548] gi|256797406|gb|ACV28061.1| DNA gyrase, A subunit [Anaerococcus prevotii DSM 20548] Length = 814 Score = 437 bits (1124), Expect = e-120, Method: Compositional matrix adjust. Identities = 280/767 (36%), Positives = 445/767 (58%), Gaps = 47/767 (6%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 + N+ V L +++ YL Y++S I RA+PD+RDG KPVHRRI++ M +GLD + Sbjct: 4 DNNIINVDLEKKMKDSYLEYSMSVIVSRALPDVRDGLKPVHRRILYGMEGLGLDPNKPTR 63 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSAR+VG+V+GK HPHGD ++YD+LVRLAQ F RYPL GQGNFG+IDGD AAA RYTE Sbjct: 64 KSARVVGDVMGKYHPHGDSAIYDALVRLAQDFSTRYPLAQGQGNFGSIDGDDAAAMRYTE 123 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 RM+++A+ +L+ +++D VDF ++EE+ EPVV PS+FPNLL NG++GIAVGMAT++ Sbjct: 124 VRMSKIAKEMLRDINKDTVDFMPNFDEEELEPVVLPSRFPNLLVNGSNGIAVGMATNMAP 183 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E +A +A + +PEISIE L + I GPDFPTG I+ + I ++Y GRG ++R Sbjct: 184 HNLGESIDACIAYMKDPEISIEDLNKIIPGPDFPTGAYIL-GKAGIKDAYSTGRGKVKLR 242 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312 A +E + IV+TEIPYQV KSRLIEKIA+L+ KRI + DIRDES + +RIV Sbjct: 243 AVCKIEPFKKNRERIVITEIPYQVNKSRLIEKIADLVKDKRIDGISDIRDESDRKGMRIV 302 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 + K R + ++++ +++ + +ET F + +N+ + VP+V+ L +++ ++ H+++V+ Sbjct: 303 IEIK-RDSNANIVLNNLYKYTQLETTFGI-INLALVDGVPKVLNLKELIEYYIEHQKDVV 360 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVD 429 RR+SF + R I++GL+IA NIDEII IIR + D+ K + +F LT+ Q Sbjct: 361 TRRTSFDLSKAKARKHIVEGLIIAIDNIDEIIRIIRSSYDNDEIKKIFFEKFGLTDKQSQ 420 Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489 AIL+++L+ L LE ++ +E L + S+LNS + N I E+ E+KE FS Sbjct: 421 AILDMQLKRLSGLEIDKLNAENKELEETIAYLLSILNSEENLLNLIIDEMEEIKEKFSDD 480 Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--KSHSVD------LS 541 RR + D + +IEKE + + ++ G+I+ L ++ V ++ Sbjct: 481 ----RRSKIIPDEGEID----IEELIEKEDVLLTLTKDGYIKRLPIDTYKVQNRGGKGIA 532 Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHN 599 A + KEGD +K +T + +L ++ GK Y+L + G + G AI ++ L Sbjct: 533 AGNTKEGDFIKKIKTTNTHEDLLFFTSFGKVYSLKTYEVPEGSRQSRGIAIINILKLESG 592 Query: 600 QDIVTAFVYDSTCK--LLVVSSKGNAFIVEESEIIANTRK-GKTFLKVSSEEKMKLVVKV 656 + I K +V+ +K ++E N RK G + + +++ V ++ Sbjct: 593 EKITEMMTLSELNKDSQIVLQTKMGTIKKTDAENFTNIRKNGIIAISLKEYDRLISVRQI 652 Query: 657 TGDHVAVVGENRKLLI-FSIDQIPEMSR-GKGVR-LQSYKDGGISDVICFKICEGLTWI- 712 + ++ + I F+ + M R +GVR ++ KD +V+ I T++ Sbjct: 653 DKEEELIISTKNGMTIQFNSADLRSMGRIAQGVRAIKLDKD---DEVVSMNIKGDETYLL 709 Query: 713 ----DSAGR--SYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753 ++ G+ S+N +N RGG G K ++GK + + Sbjct: 710 VVTENAYGKKTSFNNFKNQ------NRGGKGVKCHKVTEKTGKIIDT 750 >gi|229159055|ref|ZP_04287111.1| DNA gyrase subunit A [Bacillus cereus ATCC 4342] gi|228624474|gb|EEK81245.1| DNA gyrase subunit A [Bacillus cereus ATCC 4342] Length = 823 Score = 437 bits (1124), Expect = e-120, Method: Compositional matrix adjust. Identities = 255/704 (36%), Positives = 417/704 (59%), Gaps = 50/704 (7%) Query: 9 SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68 S+ + ++ +++ + +L YA+S I RA+PD+RDG KPVHRR+++AM+++G+ Sbjct: 2 SDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 61 Query: 69 GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128 A+KKSARIVGEVIGK HPHGD +VY+++VR+AQ F QRY L+ G GNFG++DGDSAAA Sbjct: 62 DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 121 Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188 RYTEARM++++ +++ + ++ +D++D Y+ + EP+V P++FPNLL NGT+GIAVGMA Sbjct: 122 MRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMA 181 Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248 T+IP H + E+ + LAL NP+I+I +L+E+I GPDFPT G+I+ R I +Y GRG Sbjct: 182 TNIPPHQLGEVIDGVLALSHNPDITIAELMEFIPGPDFPTAGLIL-GRSGIRRAYETGRG 240 Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308 +RA+ +EE G I+VTE+PYQV K+RLIEKIAEL+ K+I + D+RDES + Sbjct: 241 SIILRAKVEIEEKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRN 300 Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368 ++ R + ++L+ +++ + ++T F +NM L G PQV+ L L +L H+ Sbjct: 301 GMRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGE-PQVLNLKQNLYHYLEHQ 359 Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTE 425 + V+ RR+++ ++ + R IL+GL IA ++DE+I +IR+ D K ++ RF L+E Sbjct: 360 KVVIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLIERFGLSE 419 Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485 Q AIL++RL+ L LE +I+ E +L+ ++ ++L ++ I E+ EVKE Sbjct: 420 KQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIAELKAILADEEKVLEIIREELTEVKER 479 Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSLKSHSVD----- 539 F+ +RRT E++ ++ + +I ++ I + +++ G+I+ L + + Sbjct: 480 FND-----KRRT---EITIGGMEFIEDEDLIPEQNIAITLTHNGYIKRLPASTYKTQNRG 531 Query: 540 ---LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLL 581 + + + D ++ L T D IL + GK Y LP NLL Sbjct: 532 GRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEIPEYSRTAKGLPIINLL 591 Query: 582 SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR-KGKT 640 G GE I +I + D F++ +T + + + ++F AN R G Sbjct: 592 -GVDKGEWINAIIPIREFGD--DQFLFFTTKQGISKRTPLSSF--------ANIRTNGLI 640 Query: 641 FLKVSSEEKMKLVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSR 683 + + E+++ V +GD +VG + +LI F+ + M R Sbjct: 641 AISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGR 684 >gi|52145203|ref|YP_081625.1| DNA gyrase subunit A [Bacillus cereus E33L] gi|51978672|gb|AAU20222.1| DNA topoisomerase II, ATP-hydrolyzing (DNA gyrase, subunit A) [Bacillus cereus E33L] Length = 823 Score = 437 bits (1124), Expect = e-120, Method: Compositional matrix adjust. Identities = 255/704 (36%), Positives = 417/704 (59%), Gaps = 50/704 (7%) Query: 9 SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68 S+ + ++ +++ + +L YA+S I RA+PD+RDG KPVHRR+++AM+++G+ Sbjct: 2 SDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 61 Query: 69 GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128 A+KKSARIVGEVIGK HPHGD +VY+++VR+AQ F QRY L+ G GNFG++DGDSAAA Sbjct: 62 DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 121 Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188 RYTEARM++++ +++ + ++ +D++D Y+ + EP+V P++FPNLL NGT+GIAVGMA Sbjct: 122 MRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMA 181 Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248 T+IP H + E+ + LAL NP+I+I +L+E+I GPDFPT G+I+ R I +Y GRG Sbjct: 182 TNIPPHQLGEVIDGVLALSHNPDITIAELMEFIPGPDFPTAGLIL-GRSGIRRAYETGRG 240 Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308 +RA+ +EE G I+VTE+PYQV K+RLIEKIAEL+ K+I + D+RDES + Sbjct: 241 SIILRAKVEIEEKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRN 300 Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368 ++ R + ++L+ +++ + ++T F +NM L G PQV+ L L +L H+ Sbjct: 301 GMRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGE-PQVLNLKQNLYHYLEHQ 359 Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTE 425 + V+ RR+++ ++ + R IL+GL IA ++DE+I +IR+ D K ++ RF L+E Sbjct: 360 KVVIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLIERFGLSE 419 Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485 Q AIL++RL+ L LE +I+ E +L+ ++ ++L ++ I E+ EVKE Sbjct: 420 KQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIAELKAILADEEKVLEIIREELTEVKER 479 Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSLKSHSVD----- 539 F+ +RRT E++ ++ + +I ++ I + +++ G+I+ L + + Sbjct: 480 FND-----KRRT---EITIGGMEFIEDEDLIPEQNIAITLTHNGYIKRLPASTYKTQNRG 531 Query: 540 ---LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLL 581 + + + D ++ L T D IL + GK Y LP NLL Sbjct: 532 GRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEIPEYSRTAKGLPIINLL 591 Query: 582 SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR-KGKT 640 G GE I +I + D F++ +T + + + ++F AN R G Sbjct: 592 -GVDKGEWINAIIPIREFGD--DQFLFFTTKQGISKRTPLSSF--------ANIRTNGLI 640 Query: 641 FLKVSSEEKMKLVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSR 683 + + E+++ V +GD +VG + +LI F+ + M R Sbjct: 641 AISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGR 684 >gi|329121426|ref|ZP_08250050.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Dialister micraerophilus DSM 19965] gi|327469341|gb|EGF14811.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Dialister micraerophilus DSM 19965] Length = 812 Score = 437 bits (1124), Expect = e-120, Method: Compositional matrix adjust. Identities = 256/693 (36%), Positives = 408/693 (58%), Gaps = 35/693 (5%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 E + + L ++ Y+ YA+S I RA+PD+RDG KPVHRRI++AM E G+ F+ Sbjct: 5 EGKIVSTPLEGQMKNSYIDYAMSVIVTRALPDVRDGLKPVHRRILYAMQESGMISSKPFR 64 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSAR+VG+V+GK HPHGD +VY+S VR+AQ F RY L+ G GNFG++DGDSAAA RYTE Sbjct: 65 KSARLVGDVLGKYHPHGDTAVYESAVRMAQDFSTRYLLVDGHGNFGSVDGDSAAAMRYTE 124 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 RM +++ +L+ +D+D VDF Y+ EPVV PS+ PNLL NG+ GIAVGMAT+IPS Sbjct: 125 MRMAKISAEMLRDIDKDTVDFMPNYDGSLQEPVVLPSRIPNLLVNGSYGIAVGMATNIPS 184 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E+ + A+IDNPEI++++L+ Y+ GPDFPTG II+ ++ I ++YR GRG +VR Sbjct: 185 HNLGEVVDGLCAMIDNPEITVDELMNYVKGPDFPTGAIIM-GKKGIQDTYRTGRGSIKVR 243 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313 A+ +EE+ G IVVTEIPYQV K+RL+E IAEL K I + +RDES + ++ Sbjct: 244 AKTEIEEMSHGKNRIVVTEIPYQVNKARLVENIAELSKQKVIEGITALRDESDRNGMRIV 303 Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373 ++P +++ ++F + +E F M L G P+V+ L ++ +L H+ EV+ Sbjct: 304 IELRSDINPQIMLNNLFKHTQLEINFGAIMLSLVDGH-PRVLSLKQMMYYYLKHQEEVIT 362 Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDA 430 RRS + + + IL+GLLIA +IDE+I IR + + K ++S+F L+E Q A Sbjct: 363 RRSRYELDKAKAKAHILEGLLIALDHIDEVIKTIRASKTDGEAKDSLMSKFELSEKQSVA 422 Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490 IL++RLR L LE +I+S+ +++ ++ LL+ + + E+ E+KE F Sbjct: 423 ILDMRLRRLTGLEREKIESDYKDVMEVIAYLEDLLSDRNKIMKVVKDELIEIKEKFGDE- 481 Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DLSA 542 RRT F + + T ++ EP+T+ ++ +I+ ++S + +S Sbjct: 482 ----RRTQFEKSTEGFDLT---DLVPDEPMTITVTKHNYIKRMESSDIRIQRKGGRGVSG 534 Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAY--TLPAGNLLSGRGHGEA-IQLLIDLNHN 599 + K+ D + ++ T +R+L + +GK Y ++ L S G A I + L + Sbjct: 535 MKMKDDDYVWKIMNTSTHNRLLFFTDEGKVYLKSVIEFPLSSRTARGSALINFIPTLEKD 594 Query: 600 QDIVTAFVYDSTCK----LLVVSSKG--NAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653 + + D + + LL+++ G ++EE + I + G L+++ +++ V Sbjct: 595 ERVTEMLDPDMSTEGVKYLLMITRYGYVKKTLIEEYKHI--NKNGIIALRLNEGDRLVKV 652 Query: 654 VKVTGDHVAVVGENRKLLI-FSI--DQIPEMSR 683 + V GD ++G + + I FSI D+I + R Sbjct: 653 IPVVGDEDVILGTRKGMAIRFSIADDEIRAVGR 685 >gi|71894333|ref|YP_278441.1| DNA gyrase subunit A [Mycoplasma synoviae 53] gi|71851121|gb|AAZ43730.1| DNA gyrase subunit A [Mycoplasma synoviae 53] Length = 865 Score = 437 bits (1123), Expect = e-120, Method: Compositional matrix adjust. Identities = 250/695 (35%), Positives = 419/695 (60%), Gaps = 39/695 (5%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 E + V++ +E +L YA+S + RAIPD RDG KPVHRRI++ MSE+G+ G +KK Sbjct: 62 EGLTPVAIHDEVETSFLDYAMSVLVSRAIPDARDGLKPVHRRILYDMSELGMTPGTQYKK 121 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 SARIVG+V+GK HPHGD SVY+++VRLAQ F RYPL+ G GNFG+IDGD A+ RYTEA Sbjct: 122 SARIVGDVLGKYHPHGDSSVYNAMVRLAQDFSMRYPLVDGHGNFGSIDGDEPASMRYTEA 181 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 RM +++ +L+G+ ++ VDF D Y+ + EP V PS+FPNLL +G+ GIAVGMATSIP H Sbjct: 182 RMAKISTELLEGIKKNTVDFVDNYDSTEKEPAVLPSRFPNLLVSGSIGIAVGMATSIPPH 241 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 N++E +A +A N +I++E+LL+YI GPDFPTGG+I+ ++ I+E+Y+ GRG +R+ Sbjct: 242 NLKETIDAVIAYARNKDITVEELLQYIKGPDFPTGGVILGTK-GILEAYKTGRGQIPLRS 300 Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVL 313 + + ++ + I++T+IPY ++KS ++E I++L + + D+RDES D +RIV+ Sbjct: 301 EYEIVQLKNEKFRIIITKIPYNIRKSAIVESISKLDKENAVEGISDLRDESNRDGIRIVI 360 Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373 K + +P++++ +F S + T+F +NM L + P+++ L +L +L H++EVL Sbjct: 361 DIK-KGFNPEVVLNKLFKKSSLLTKFSVNMVAL-VNTQPKLLTLKDVLDVYLEHQKEVLT 418 Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDA 430 R +F ++ + IL+GLL+A NID+++A+I+ +++ ++ ++SL+E Q A Sbjct: 419 RELNFDLKKAQDSIHILEGLLVATNNIDDVVALIKSSSSDEVASKKLIEKYSLSEEQAKA 478 Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490 ILN+RL L L ++ +E++ L E ++I S+L+S ++ N + ++ ++KE + Sbjct: 479 ILNMRLGRLTGLSYSKMTNEIEELRKEIQRITSILDSEQELVNNVIADLEKIKEKY---- 534 Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL--------SA 542 G R T + S + +Q +I ++ I + + G+++ + +L + Sbjct: 535 --GDSRKTSIDASASSSINEEQ-LIPRKDIVITATVDGFVKRVNLEEYNLQNRGGMGSTG 591 Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNH-- 598 + GD++ + +T + L S GK Y L A + + G + L++LN Sbjct: 592 MKTWSGDAILSIIQTNTHVDLFLFSNLGKVYKLRAYKIQEADKKSKGNSFANLVELNKEL 651 Query: 599 NQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKG-----KTFLKVSSEEKM 650 N+ I+ Y+S LL V+ KG IV+++ + N +K K F E+++ Sbjct: 652 NEKIIRILPVDSYESNLHLLTVTKKG---IVKKT-ALDNFKKVRSNGIKAFKLKDEEDEL 707 Query: 651 KLVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSRG 684 K V+ VT + +V N K ++ F +I +R Sbjct: 708 KDVILVTNSDLVLVANNHKNVVKFEASKIRSQARN 742 >gi|241667133|ref|ZP_04754711.1| DNA topoisomerase IV subunit A [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254875687|ref|ZP_05248397.1| DNA topoisomerase IV subunit A [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254841708|gb|EET20122.1| DNA topoisomerase IV subunit A [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 739 Score = 437 bits (1123), Expect = e-120, Method: Compositional matrix adjust. Identities = 265/729 (36%), Positives = 417/729 (57%), Gaps = 20/729 (2%) Query: 27 EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86 E+ YL Y++ I +RA+P + DG KPV RRII+AMSE+GL + +KKSAR VG+V+GK Sbjct: 18 EQAYLNYSMYVILDRALPHISDGLKPVQRRIIYAMSEIGLSHLSKYKKSARTVGDVLGKY 77 Query: 87 HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQVAELILQ 145 HPHGD + Y+++V +AQ F RYP I GQGN+G+ID S AA RYTE+R+++ A L+L Sbjct: 78 HPHGDSACYEAMVLMAQNFSYRYPFIDGQGNWGSIDDPKSFAAMRYTESRLSKYAVLLLD 137 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 + + VD+ ++ EP + P++ PN+L NG GIAVGM+T IP HN+ E+ A L Sbjct: 138 ELKKGTVDWVKNFDGTMDEPKLLPAQVPNILLNGAMGIAVGMSTYIPPHNITEVINACLH 197 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265 L+ NP+ SIE++LE I PD+P G I+ S+E I E Y+ G G R +A + + G Sbjct: 198 LLSNPKASIEEVLEIIEAPDYPGGANIISSKEEIAEVYKSGNGSIRQQAVYEYDNHGN-- 255 Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES--AEDVRIVLFPKNRSLDPD 323 +++T +P+QV + ++E+IA + ++I +++I+DES E V+IVL+ + + Sbjct: 256 --VIITRLPHQVSSASVMEQIANQLKQQKITWIKNIQDESDDKEPVKIVLYSASTKKNIQ 313 Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383 +M + +D+E F +NMN++ + PQV L IL EWL +RR L RR + + Sbjct: 314 KIMGHLLATTDLEKSFRVNMNMIGLDNRPQVKNLLDILNEWLEYRRHTLRRRLQTSLDKV 373 Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLE 443 R+ IL+GLLIA+LNIDE+I IIRN D P + SRF+L+E Q +AILN+RLR L K+E Sbjct: 374 LDRLHILEGLLIAFLNIDEVIEIIRNFDDPSLELQSRFALSEIQAEAILNIRLRKLAKIE 433 Query: 444 EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVS 503 E +IK E L EKE ++ LNS + N + E++++ F S RR+ + Sbjct: 434 EIEIKKEQKELQKEKELLEGYLNSEVKFKNLMKKELKQILADFGDS-----RRSKIVQAD 488 Query: 504 RADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRI 563 +A +A ++ ++ E +TV++S GW+R K ++D L +K D +A ++ ++ Sbjct: 489 KA-QALEEKDLMPSERVTVILSKAGWVRCAKGDNIDPKGLSYKPEDKPYLATSGNSNIKL 547 Query: 564 LLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNA 623 + + GKAY++ S RG+GE I I L+ +I+ + L+ S+ G Sbjct: 548 IFFTKLGKAYSMYVDKFPSARGYGEHITTYIPLDKEDEIINIEFANVAEHFLIASTSGKG 607 Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR 683 F++ ++IAN GK +++ K + + V + +I + + + Sbjct: 608 FVIPAEDLIANKVTGKNIF--DADDVFKFIPYDKDLKMLAVSSQGRAIIRDFESFAVLKK 665 Query: 684 GKGVRLQSYKDGGISDVI-CFKICEGLTWIDSAGRSYNRSENDLLG--WLGKRGGVGSLV 740 GKG + I FK+ + LT SAG+ + R +N + K G G L+ Sbjct: 666 GKGKAIIKLDKKDKLKFIELFKLEQELTL--SAGKRFIRIDNKNFETYYTDKPSGGGVLL 723 Query: 741 PKGFPRSGK 749 P+GF + K Sbjct: 724 PQGFRKITK 732 >gi|308171898|ref|YP_003918603.1| DNA gyrase subunit A [Bacillus amyloliquefaciens DSM 7] gi|307604762|emb|CBI41133.1| DNA gyrase (subunit A) [Bacillus amyloliquefaciens DSM 7] gi|328551707|gb|AEB22199.1| DNA gyrase subunit A [Bacillus amyloliquefaciens TA208] gi|328909966|gb|AEB61562.1| DNA gyrase (subunit A) [Bacillus amyloliquefaciens LL3] Length = 819 Score = 437 bits (1123), Expect = e-120, Method: Compositional matrix adjust. Identities = 234/579 (40%), Positives = 365/579 (63%), Gaps = 23/579 (3%) Query: 6 ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65 +S NT V+ V++ + +L YA+S I RA+PD+RDG KPVHRRI++AM+++G Sbjct: 1 MSEQNT---PQVREVNISQEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMNDLG 57 Query: 66 LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125 + +KKSARIVGEVIGK HPHGD +VY+S+VR+AQ F RY L+ G GNFG++DGDS Sbjct: 58 MTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDS 117 Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185 AAA RYTEARM+++A IL+ + +D +D++D Y+ + EP V PS+FPNLL NG +GIAV Sbjct: 118 AAAMRYTEARMSKIAMEILRDITKDTIDYQDNYDGSEREPAVMPSRFPNLLVNGAAGIAV 177 Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245 GMAT+IP H + E+ + LA+ +NPEI+I++L+EYI GPDFPT G I+ R I ++Y Sbjct: 178 GMATNIPPHQLGEVIDGVLAVSENPEITIQELMEYIPGPDFPTAGQIL-GRSGIRKAYES 236 Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305 GRG +RA+ +E+ G I+VTE+PYQV K+RLIEKIA+L+ K+I + D+RDES Sbjct: 237 GRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKARLIEKIADLVRDKKIEGITDLRDES 296 Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365 + V+ R + +++ +++ + ++T F +N+ L G+ P+V+ L L+ +L Sbjct: 297 DRNGMRVVIELRRDANAHVILNNLYKQTALQTSFGINLLALVDGQ-PKVLSLKQCLEHYL 355 Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFS 422 H++ V+ RR+++ ++ + R IL+GL IA ++D +I++IRN + ++ +FS Sbjct: 356 DHQKVVIRRRTAYELRKAEARAHILEGLRIALDHLDAVISLIRNSQTAEIARTGLIEQFS 415 Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482 LTE Q AIL++RL+ L LE +I+ E +L+A ++ +L + ++ I E+ E+ Sbjct: 416 LTEKQAQAILDMRLQRLTGLEREKIEEEYQSLVALIAELKDILANEERVLEIIREELNEI 475 Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLK 534 KE F+ RRT V+ + + +IE+E I + +++ G++ RS K Sbjct: 476 KERFNDE-----RRTEI--VTSGLETIEDEDLIERENIVITLTHNGYVKRLPASTYRSQK 528 Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573 + + E D ++ + T D IL S GK Y Sbjct: 529 RGGKGVQGMGTNEDDFVEHLISTSTHDTILFFSNKGKVY 567 >gi|294781816|ref|ZP_06747149.1| DNA gyrase, A subunit [Fusobacterium sp. 1_1_41FAA] gi|294481926|gb|EFG29694.1| DNA gyrase, A subunit [Fusobacterium sp. 1_1_41FAA] Length = 812 Score = 437 bits (1123), Expect = e-120, Method: Compositional matrix adjust. Identities = 240/606 (39%), Positives = 373/606 (61%), Gaps = 25/606 (4%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 NV + L+E YL Y++S I RA+PD+RDG KPVHRRI+ AM+EMG+ FKKS Sbjct: 3 NVDNRYIEEELKESYLDYSMSVIVSRALPDVRDGLKPVHRRILFAMNEMGMTNDKPFKKS 62 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 ARIVGEV+GK HPHGD +VY ++VR+AQ F RY L+ G GNFG+IDGDSAAA RYTEAR Sbjct: 63 ARIVGEVLGKYHPHGDSAVYGTMVRMAQDFNYRYLLVEGHGNFGSIDGDSAAAMRYTEAR 122 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 M ++ +L+ +D+D +D+R +++ EP V P+K PNLL NG GIAVGMAT+IP HN Sbjct: 123 MEKITAELLEDIDKDTIDWRKNFDDSLDEPTVLPAKLPNLLLNGAIGIAVGMATNIPPHN 182 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 + E+ + LALIDN +I I +L+ YI GPDFPTG II + R I+E+Y+ GRG +VR + Sbjct: 183 LGELVDGILALIDNKDIEILELMNYIKGPDFPTGAII-DGRAGIIEAYKTGRGKIKVRGK 241 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLF 314 +EE G I+V+EIPYQ+ K+ LIEKIA L+ K+I + D+RDES E +RIV+ Sbjct: 242 VDIEEQKNGKANIIVSEIPYQLNKANLIEKIANLVKEKKITEISDLRDESNREGIRIVIE 301 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K + +P+L++ ++ +D++ F + M L + VP+V+ L +L E++ HR +V+ R Sbjct: 302 VK-KGEEPELVLNKLYKFTDLQNTFGVIMLSL-VNNVPRVLNLKEMLNEYIKHRFDVITR 359 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAI 431 R++F + ++R ILKG IA NID II +IR + ++ ++ T+ Q +I Sbjct: 360 RTAFDLDKAEKRAHILKGYQIALENIDRIIELIRASSDGTVAREQLIEKYGFTDIQARSI 419 Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491 L+++L+ L LE +I +E + A +++ +L + + + E+ E+KE ++ Sbjct: 420 LDMKLQRLTGLEREKIDNEYKEIEALIKELREVLADNSKIYEIMKKELLEIKEKYND--- 476 Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD--------LSAL 543 +R T E R + L + +I+ E I + +N+G+++ +++ +SAL Sbjct: 477 ---KRRTQIEEERME--ILPEDLIKDEEIIITYTNKGYVKRIEASKYKAQRRGGRGVSAL 531 Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQD 601 + E D + + A T D +++ + GK Y + A + LS + G + +I+L+ + Sbjct: 532 NTIEDDYAEKIISASTLDTMMIFTDKGKVYNIRAYEIPDLSKQSRGRLLSNIINLSEGEK 591 Query: 602 IVTAFV 607 + V Sbjct: 592 VSDTIV 597 >gi|313891414|ref|ZP_07825030.1| DNA gyrase, A subunit [Dialister microaerophilus UPII 345-E] gi|313120189|gb|EFR43365.1| DNA gyrase, A subunit [Dialister microaerophilus UPII 345-E] Length = 812 Score = 437 bits (1123), Expect = e-120, Method: Compositional matrix adjust. Identities = 256/693 (36%), Positives = 408/693 (58%), Gaps = 35/693 (5%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 E + + L ++ Y+ YA+S I RA+PD+RDG KPVHRRI++AM E G+ F+ Sbjct: 5 EGKIVSTPLEGQMKNSYIDYAMSVIVTRALPDVRDGLKPVHRRILYAMQESGMISSKPFR 64 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSAR+VG+V+GK HPHGD +VY+S VR+AQ F RY L+ G GNFG++DGDSAAA RYTE Sbjct: 65 KSARLVGDVLGKYHPHGDTAVYESAVRMAQDFSTRYLLVDGHGNFGSVDGDSAAAMRYTE 124 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 RM +++ +L+ +D+D VDF Y+ EPVV PS+ PNLL NG+ GIAVGMAT+IPS Sbjct: 125 MRMAKISAEMLRDIDKDTVDFMPNYDGSLQEPVVLPSRIPNLLVNGSYGIAVGMATNIPS 184 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E+ + A+IDNPEI++++L+ Y+ GPDFPTG II+ ++ I ++YR GRG +VR Sbjct: 185 HNLGEVVDGLCAMIDNPEITVDELMNYVKGPDFPTGAIIM-GKKGIQDTYRTGRGSIKVR 243 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313 A+ +EE+ G IVVTEIPYQV K+RL+E IAEL K I + +RDES + ++ Sbjct: 244 AKTEIEEMSHGKNRIVVTEIPYQVNKARLVENIAELSKQKVIEGITALRDESDRNGMRIV 303 Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373 ++P +++ ++F + +E F M L G P+V+ L ++ +L H+ EV+ Sbjct: 304 IELRSDINPQIMLNNLFKHTQLEINFGAIMLSLVDGH-PRVLSLKQMMYYYLKHQEEVIT 362 Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDA 430 RRS + + + IL+GLLIA +IDE+I IR + + K ++S+F L+E Q A Sbjct: 363 RRSRYELDKAKAKAHILEGLLIALDHIDEVIKTIRASKTDGEAKDSLMSKFELSEKQSVA 422 Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490 IL++RLR L LE +I+S+ +++ ++ LL+ + + E+ E+KE F Sbjct: 423 ILDMRLRRLTGLEREKIESDYKDVMEVIAYLEDLLSDRNKIMKVVKDELIEIKEKFGDE- 481 Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DLSA 542 RRT F + + T ++ EP+T+ ++ +I+ ++S + +S Sbjct: 482 ----RRTQFEKSTEGFDLT---DLVPDEPMTITVTKHNYIKRMESSDIRIQRKGGRGVSG 534 Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAY--TLPAGNLLSGRGHGEA-IQLLIDLNHN 599 + K+ D + ++ T +R+L + +GK Y ++ L S G A I + L + Sbjct: 535 MKMKDDDYVWKIMNTSTHNRLLFFTDEGKVYLKSVIEFPLSSRTARGSALINFIPTLEKD 594 Query: 600 QDIVTAFVYDSTCK----LLVVSSKG--NAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653 + + D + + LL+++ G ++EE + I + G L+++ +++ V Sbjct: 595 ERVTEMLDPDMSNEGVKYLLMITRYGYVKKTLIEEYKHI--NKNGIIALRLNEGDRLVKV 652 Query: 654 VKVTGDHVAVVGENRKLLI-FSI--DQIPEMSR 683 + V GD ++G + + I FSI D+I + R Sbjct: 653 IPVVGDEDVILGTRKGMAIRFSIADDEIRSVGR 685 >gi|298675299|ref|YP_003727049.1| DNA gyrase subunit A [Methanohalobium evestigatum Z-7303] gi|298288287|gb|ADI74253.1| DNA gyrase, A subunit [Methanohalobium evestigatum Z-7303] Length = 830 Score = 436 bits (1122), Expect = e-120, Method: Compositional matrix adjust. Identities = 253/703 (35%), Positives = 419/703 (59%), Gaps = 43/703 (6%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 E++ V + +++ Y+ YA+S I RA+PD RDG KPVHRRI+++M E G+ + +KK Sbjct: 24 EDISPVLIEEEMKKSYIDYAMSVIVGRALPDARDGLKPVHRRILYSMKEAGITYDKPYKK 83 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 SAR+VG+V+GK HPHGD +VYDSLVR+ Q F RYPL+ GQGNFG+IDGDSAAA RYTE Sbjct: 84 SARVVGDVLGKFHPHGDMAVYDSLVRMVQEFSMRYPLVDGQGNFGSIDGDSAAAMRYTEV 143 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 RM +++E +L +D++ V F+ Y+ +EP V P+K PNL+ NG++GIAVGMAT+IP H Sbjct: 144 RMEKISEEMLVDIDKETVPFQPNYDGALTEPTVLPAKLPNLIVNGSTGIAVGMATNIPPH 203 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 N++E+ + L +IDNP++SI +L I GPDFPT G I+ + E I +Y GRG ++R+ Sbjct: 204 NLKEVADGLLMMIDNPDVSIPELRTAIKGPDFPTAGTILGT-EGIKSAYETGRGRIKIRS 262 Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVL 313 +EE+ IVV+E+PYQV K+ LIE IA L+ K+I + D+RDES E +RIV+ Sbjct: 263 VADIEEMKNDKHRIVVSELPYQVNKANLIESIASLVRDKKIQGISDLRDESDREGIRIVI 322 Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373 R+ +P++++ ++ + ++ + + +N+ + VP+V+ L +L+ +L HR +V+ Sbjct: 323 -ELARNTNPNVILNQLYKHTQLQVTYGI-INLALVDGVPKVLNLYELLQIYLNHRMDVIQ 380 Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDA 430 +RS ++++ + R IL GL I N+DE+I+ IRN + K ++ +F L E Q A Sbjct: 381 KRSQYQLRKAEERAHILDGLKICLGNLDEVISFIRNSKTTPEAKEGLIEKFQLDEAQAKA 440 Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490 IL++RL++L +E+ +I+SE + L+ + + ++ S +++N I E+ E+KE ++ Sbjct: 441 ILDMRLQNLTAIEQDKIESEYNELVEKIADLKEIIASDSRKYNIIKDELTELKENYADE- 499 Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL------KSH--SVDLSA 542 RRT ++ +D+ ++ +I +E + + I+N G+I+ L K H ++ Sbjct: 500 ----RRT---DIQSSDEELSEEDLIPEEDVLITITNSGYIKRLPVTTYSKQHRGGRGVAG 552 Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDLN 597 ++ K+ D ++ A T D +LL + G K Y +P G S + G+A+ L +L Sbjct: 553 INVKDDDFVEDVFVASTRDYLLLFTNKGRVNCKKVYEIPQG---SKQSRGKALVNLFELE 609 Query: 598 HNQDI---VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654 +++ + +T + LL+ + G S TRK + ++ E +LV Sbjct: 610 NDEAVSSMITVKEFSDDWNLLMATKYGTVKKTPLSSF--KTRKKSGLIAINLNENDELVN 667 Query: 655 KVTGD---HVAVVGENRKLLIFSIDQIPEMSRG----KGVRLQ 690 + D + +V K + F+ + M R +G+RL Sbjct: 668 VILTDGQNDIILVSSTGKAIRFAETNVRPMGRAAQGVRGIRLN 710 >gi|262066873|ref|ZP_06026485.1| DNA gyrase, A subunit [Fusobacterium periodonticum ATCC 33693] gi|291379424|gb|EFE86942.1| DNA gyrase, A subunit [Fusobacterium periodonticum ATCC 33693] Length = 812 Score = 436 bits (1122), Expect = e-120, Method: Compositional matrix adjust. Identities = 239/606 (39%), Positives = 375/606 (61%), Gaps = 25/606 (4%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 NV + L+E YL Y++S I RA+PD+RDG KPVHRRI+ AM+EMG+ FKKS Sbjct: 3 NVDNRYIEEELKESYLDYSMSVIVSRALPDVRDGLKPVHRRILFAMNEMGMTNDKPFKKS 62 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 ARIVGEV+GK HPHGD +VY ++VR+AQ F RY L+ G GNFG+IDGDSAAA RYTEAR Sbjct: 63 ARIVGEVLGKYHPHGDSAVYGTMVRMAQDFNYRYLLVEGHGNFGSIDGDSAAAMRYTEAR 122 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 M ++ +L+ +D+D +D+R +++ EP V P+K PNLL NG GIAVGMAT+IP HN Sbjct: 123 MEKITAELLEDIDKDTIDWRKNFDDSLDEPTVLPAKLPNLLLNGAIGIAVGMATNIPPHN 182 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 + E+ + LALIDN +I I +L+ YI GPDFPTG II + R I+E+Y+ GRG +VR + Sbjct: 183 LGELVDGILALIDNKDIEILELMNYIKGPDFPTGAII-DGRAGIIEAYKTGRGKIKVRGK 241 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLF 314 +EE G I+V+EIPYQ+ K+ LIEKIA L+ K+I + D+RDES E +R+V+ Sbjct: 242 VDIEEQKNGKANIIVSEIPYQLNKANLIEKIANLVKEKKITEISDLRDESNREGIRVVIE 301 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K + +P+L++ ++ +D++T F + M L + VP+V+ L +L E++ HR +V+ R Sbjct: 302 VK-KGEEPELVLNKLYKYTDLQTTFGVIMLSL-VNNVPRVLNLKEMLNEYIKHRFDVITR 359 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAI 431 R++F + ++R ILKG IA NID II +IR + ++ ++ T+ Q +I Sbjct: 360 RTAFDLDKAEKRAHILKGYQIALENIDRIIELIRASSDGTVAREQLIEKYGFTDIQARSI 419 Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491 L+++L+ L LE +I +E + A +++ +L+ + + + E+ E+K+ ++ Sbjct: 420 LDMKLQRLTGLEREKIDNEYKEIEALIKELREVLSDNSKIYEIMKKELLELKDKYND--- 476 Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD--------LSAL 543 +R T E R + L + +I+ E I + +N+G+++ +++ +SAL Sbjct: 477 ---KRRTQIEEERME--ILPEDLIKDEEIIITYTNKGYVKRIEASKYKAQRRGGRGVSAL 531 Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQD 601 + E D + + A T D +++ + GK Y + A + LS + G + +I+L+ + Sbjct: 532 NTIEDDYAEKIITASTLDTMMIFTDKGKVYNIRAYEIPDLSKQSRGRLLSNIINLSEGEK 591 Query: 602 IVTAFV 607 + V Sbjct: 592 VSDTIV 597 >gi|13357638|ref|NP_077912.1| DNA gyrase subunit A [Ureaplasma parvum serovar 3 str. ATCC 700970] gi|170761893|ref|YP_001752161.1| DNA gyrase subunit A [Ureaplasma parvum serovar 3 str. ATCC 27815] gi|171920319|ref|ZP_02931663.1| DNA gyrase, A subunit [Ureaplasma parvum serovar 1 str. ATCC 27813] gi|183508667|ref|ZP_02958161.1| DNA gyrase, A subunit [Ureaplasma parvum serovar 14 str. ATCC 33697] gi|186701885|ref|ZP_02971542.1| DNA gyrase, A subunit [Ureaplasma parvum serovar 6 str. ATCC 27818] gi|11386848|sp|Q9PR63|GYRA_UREPA RecName: Full=DNA gyrase subunit A gi|11270992|pir||F82937 DNA topoisomerase chain A, DNA gyrase A subunit UU082 [imported] - Ureaplasma urealyticum gi|6899033|gb|AAF30487.1|AE002107_11 DNA topoisomerase chain A - DNA gyrase A subunit [Ureaplasma parvum serovar 3 str. ATCC 700970] gi|168827470|gb|ACA32732.1| DNA gyrase, A subunit [Ureaplasma parvum serovar 3 str. ATCC 27815] gi|171902737|gb|EDT49026.1| DNA gyrase, A subunit [Ureaplasma parvum serovar 1 str. ATCC 27813] gi|182676135|gb|EDT88040.1| DNA gyrase, A subunit [Ureaplasma parvum serovar 14 str. ATCC 33697] gi|186701192|gb|EDU19474.1| DNA gyrase, A subunit [Ureaplasma parvum serovar 6 str. ATCC 27818] Length = 840 Score = 436 bits (1122), Expect = e-120, Method: Compositional matrix adjust. Identities = 263/699 (37%), Positives = 409/699 (58%), Gaps = 37/699 (5%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 +K S+ +E +L Y++S I RA+PD+RDGFKPVHRR + A E G+ +KKSA Sbjct: 25 IKEQSITKEVETSFLDYSMSVIVARALPDVRDGFKPVHRRALFAAFENGMTHDKPYKKSA 84 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R VG+VIGK HPHGDQ+VY ++VR+AQ F RY L+ G GNFG+IDGDSAAA RYTEAR+ Sbjct: 85 RWVGDVIGKYHPHGDQAVYQTIVRMAQDFSMRYLLVDGHGNFGSIDGDSAAAMRYTEARL 144 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 ++++ +L+ +D++ VDF Y+ + EP V PS FPNLL NGT+GIAVGMAT+IP HN+ Sbjct: 145 SKISYELLKYIDKETVDFVPNYDASEQEPSVLPSGFPNLLTNGTTGIAVGMATNIPPHNL 204 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+C+A A N ++I +++EY+ GPDFPTG I I++ + GRG +R+++ Sbjct: 205 TEVCQAIKAYAKNHNVTISEIMEYLKGPDFPTGAEIY-GDSGIIKYFNTGRGSVTIRSKY 263 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFP 315 +E++G+G IVVTEIPY V K+ LIEKI EL+ K+I + D+RDES+ D +RIV+ Sbjct: 264 EIEDIGQGRVAIVVTEIPYMVNKANLIEKIVELVTNKQIEGISDLRDESSRDGIRIVIEV 323 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 K R + P++L+ +F + ++T F +N N+ + VP V+ + ++K + H+ E+L RR Sbjct: 324 K-RDVIPEVLLNKLFKTTPLQTNFSVN-NLALVNGVPMVLNIKEMIKYYFEHQIEILVRR 381 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432 ++F ++ R+ I++GL+IA NIDE+I II+ ++D ++ RF LTE Q AIL Sbjct: 382 TNFDLKKAKERIHIVEGLVIAVNNIDEVIKIIKASGDDDIASKSLIQRFDLTELQTKAIL 441 Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492 +RLR+L L ++K E ++L+ + ++ +LN+ +Q N I CE + + K D Sbjct: 442 EMRLRALTGLNIDKLKKEYEDLILVIKDLEDVLNNYNRQVN-IICE--NLDYLIEKFGDE 498 Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSVDLSALH 544 R + S D + +I E I V +S RG+ + L + V + L Sbjct: 499 RRTEIMYGVSSHID----DEDLIPVEDIVVTMSKRGYFKRLPIDTYKNQRRGGVGVQGLK 554 Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDI 602 E D ++ L A+T +L S G+ Y L + G + I + + + ++ I Sbjct: 555 TYEDDDVEKILVANTHTDLLFFSDLGRVYRLRGHEVPLGSRQSKGIPAINFLPIEKSESI 614 Query: 603 VTAFVYDS--TCKLLVVSSKG---NAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657 +T D+ L +SKG A + + I AN GK + + +K+ V++ Sbjct: 615 LTILPIDNYDQGSLFFTTSKGIIKRANLSDFESIRAN---GKIAITLKDGDKLFSVMQTL 671 Query: 658 G-DHVAVVGENRKLLIFSIDQIPEMSR----GKGVRLQS 691 G D V + N ++ F+ + EM R KG+ L++ Sbjct: 672 GNDEVFIGASNGNVIRFNENDAREMGRIATGVKGINLEN 710 >gi|52078498|ref|YP_077289.1| DNA gyrase subunit A [Bacillus licheniformis ATCC 14580] gi|52783862|ref|YP_089691.1| DNA gyrase subunit A [Bacillus licheniformis ATCC 14580] gi|319648525|ref|ZP_08002741.1| DNA gyrase subunit A [Bacillus sp. BT1B_CT2] gi|52001709|gb|AAU21651.1| DNA gyrase (subunit A) [Bacillus licheniformis ATCC 14580] gi|52346364|gb|AAU38998.1| GyrA [Bacillus licheniformis ATCC 14580] gi|317389604|gb|EFV70415.1| DNA gyrase subunit A [Bacillus sp. BT1B_CT2] Length = 822 Score = 436 bits (1122), Expect = e-120, Method: Compositional matrix adjust. Identities = 229/568 (40%), Positives = 362/568 (63%), Gaps = 20/568 (3%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 V+ V++ + +L YA+S I RA+PD+RDG KPVHRRI++AM+++G+ +KKSA Sbjct: 9 VQEVNISQEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSA 68 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 RIVGEVIGK HPHGD +VY+++VR+AQ F RY L+ G GNFG++DGDSAAA RYTEARM Sbjct: 69 RIVGEVIGKYHPHGDSAVYEAMVRMAQDFNYRYMLVQGHGNFGSVDGDSAAAMRYTEARM 128 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 ++++ IL+ +++D +D++D Y+ + EPVV P++FPNLL NG +GIAVGMAT+IP H + Sbjct: 129 SKISMEILRDINKDTIDYQDNYDGSEKEPVVMPARFPNLLVNGAAGIAVGMATNIPPHQL 188 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ + LA+ NP+I++ +L+E I GPDFPT G+I+ R I ++Y GRG +RA+ Sbjct: 189 GEVIDGVLAVSKNPDITLPELMEIIPGPDFPTAGLIL-GRSGIRKAYETGRGSITLRAKA 247 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316 +EE G I++TEIPYQV K+RLIEKIA+L+ K+I + D+RDES + ++ Sbjct: 248 QIEETSSGKPVIIITEIPYQVNKARLIEKIADLVRDKKIDGITDLRDESDRNGMRIVIEL 307 Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376 R + ++L+ +++ + ++T F +N+ L G+ P+V+ L L+ +L H++ V+ RR+ Sbjct: 308 RRDANANVLLNNLYKQTALQTSFGINLLALVDGQ-PKVLSLKQCLEHYLDHQKVVIRRRT 366 Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAILN 433 +F ++ + R IL+GL +A ++DE+I++IRN K ++ +FSLTE Q AIL+ Sbjct: 367 AFELRKAEARAHILEGLRVALDHLDEVISLIRNSQTAEIAKNGLIEKFSLTEKQAQAILD 426 Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493 +RL+ L LE +I+ E +L+ ++ ++L ++ I E+ EVKE F+ Sbjct: 427 MRLQRLTGLEREKIEEEYQSLVELIAELKAILADEEKVLEIIREELTEVKERFNDE---- 482 Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DLSALHF 545 RRT V+ + + +I +E I V +++ G+I+ L S + + + Sbjct: 483 -RRTEI--VTSGLETIEDEDLITRENIVVTLTHNGYIKRLPSSTYRSQKRGGKGIQGMGT 539 Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAY 573 E D ++ + T D IL S GK Y Sbjct: 540 NEDDFVEHLISTSTHDTILFFSNKGKVY 567 >gi|269798887|ref|YP_003312787.1| DNA gyrase subunit alpha [Veillonella parvula DSM 2008] gi|269095516|gb|ACZ25507.1| DNA gyrase, A subunit [Veillonella parvula DSM 2008] Length = 822 Score = 436 bits (1122), Expect = e-120, Method: Compositional matrix adjust. Identities = 242/618 (39%), Positives = 364/618 (58%), Gaps = 36/618 (5%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 N+ V + ++ Y+ YA+S I RA+PD+RDG KPVHRRI++AM E G+ +KKS Sbjct: 10 NIHPVQIDKEMKNAYIDYAMSVIVMRALPDVRDGLKPVHRRILYAMHETGMTPNKPYKKS 69 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 ARIVG+V+GK HPHGD SVYD+ VRLAQ F RY L+ G GNFG+IDGDSAAA RYTE R Sbjct: 70 ARIVGDVLGKYHPHGDSSVYDATVRLAQDFNTRYLLVDGHGNFGSIDGDSAAAMRYTEVR 129 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 M ++ +L +D++ VDF Y+E EP V P+K PNLL NG+SGIAVGMAT+IP HN Sbjct: 130 MAKITTEMLADIDKETVDFMPNYDESLQEPTVLPAKIPNLLINGSSGIAVGMATNIPPHN 189 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 + E+C LIDNP++++++L+ I GPDFPTG +I+ RE I ++Y GRG ++RAR Sbjct: 190 LNEVCNGLAMLIDNPDVTVDELMTAIKGPDFPTGALIL-GREGIKKAYSTGRGSVKMRAR 248 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315 +EE+ +G IVVTEIPYQV K+R+IE IA L K I + +RDES ++ Sbjct: 249 ATIEEMSKGKHKIVVTEIPYQVNKARVIETIANLSRDKVIDGITALRDESDRQGMRIVIE 308 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 + PD+++ ++ + ++ F + M L G P+V+ L +L +L HR +V+ RR Sbjct: 309 LRADVQPDIVLNKLYKHTQLQESFGVIMLALVDGH-PRVLNLKEVLGYYLDHRLDVIVRR 367 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLTENQVDAIL 432 + F + + R IL+GLLIA +IDE+IA IR+ ++ + ++ +F L+E Q AIL Sbjct: 368 TQFELNKAEARAHILEGLLIALDHIDEVIATIRSSQTDEIARNALMQKFGLSEKQAVAIL 427 Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492 ++RLR L LE +I+ E LLA E + ++L S +Q I E+ ++K+ + Sbjct: 428 DMRLRRLTGLEREKIEEEYKELLALIEDLKAILGSEARQRQIIKDELDDMKKKYGDP--- 484 Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSH--------SVDLSALH 544 RR + S D + +I E + + ++ +G+I+ + ++ + + Sbjct: 485 -RRSEITIDTSDLD----VEDLIADEEMVITLTKQGYIKRMNANVYRNQHKGGAGVIGMK 539 Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTL-----PAGNLLSGRGH----------GEA 589 KE D + +H T + +L ++ G+AY L P + RG GE+ Sbjct: 540 TKEDDYVTQIMHVRTHNTLLFFTSAGRAYRLKAYEVPEAGSRNSRGTAMVNVLPLAVGES 599 Query: 590 IQLLIDLNHNQDIVTAFV 607 + +IDL + V F+ Sbjct: 600 VTTMIDLERVHEDVNLFM 617 >gi|167626575|ref|YP_001677075.1| DNA topoisomerase IV subunit A [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|167596576|gb|ABZ86574.1| DNA topoisomerase (ATP-hydrolyzing) [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 739 Score = 436 bits (1122), Expect = e-120, Method: Compositional matrix adjust. Identities = 265/729 (36%), Positives = 418/729 (57%), Gaps = 20/729 (2%) Query: 27 EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86 E+ YL Y++ I +RA+P + DG KPV RRII+AMSE+GL + +KKSAR VG+V+GK Sbjct: 18 EQAYLNYSMYVILDRALPHISDGLKPVQRRIIYAMSEIGLSHLSKYKKSARTVGDVLGKY 77 Query: 87 HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQVAELILQ 145 HPHGD + Y+++V +AQ F RYP I GQGN+G+ID S AA RYTE+R+++ A L+L Sbjct: 78 HPHGDSACYEAMVLMAQNFSYRYPFIDGQGNWGSIDDPKSFAAMRYTESRLSKYAVLLLD 137 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 + + VD+ ++ EP + P++ PN+L NG GIAVGM+T IP HN+ E+ A L Sbjct: 138 ELKKGTVDWVKNFDGTMDEPKLLPAQVPNILLNGAMGIAVGMSTYIPPHNITEVINACLH 197 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265 L+ NP+ SIE++LE I PD+P G I+ S+E I E Y+ G G R +A + + G Sbjct: 198 LLSNPKASIEEVLEIIEAPDYPGGANIISSKEEIAEVYKSGNGSIRQQAVYEYDNHGN-- 255 Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES--AEDVRIVLFPKNRSLDPD 323 +++T +P+QV + ++E+IA + ++I +++I+DES E V+IVL+ + + Sbjct: 256 --VIITRLPHQVSSASVMEQIANQLKQQKITWIKNIQDESDDKEPVKIVLYSASTKKNIQ 313 Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383 +M + +D+E F +NMN++ + PQV L IL EWL +RR L RR + + Sbjct: 314 KIMGHLLATTDLEKSFRVNMNMIGLDNRPQVKNLLDILNEWLEYRRHTLRRRLQTSLDKV 373 Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLE 443 R+ IL+G+LIA+LNIDE+I IIRN D P + SRF+L+E Q +AILN+RLR L K+E Sbjct: 374 LDRLHILEGMLIAFLNIDEVIDIIRNYDDPSLELQSRFALSEIQAEAILNIRLRKLAKIE 433 Query: 444 EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVS 503 E +IK E L EKE ++ LNS + N + E++++ F S RR+ E Sbjct: 434 EIEIKKEQKELQKEKELLEGYLNSEVKFKNLMKKELKQILADFGDS-----RRSKIVEAD 488 Query: 504 RADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRI 563 +A +A ++ ++ E +TV++S GW+R K ++D L +K D +A ++ ++ Sbjct: 489 KA-QALEEKDLMPSERVTVILSKAGWVRCAKGDNIDPKGLSYKPEDKPYLATSGNSNIKL 547 Query: 564 LLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNA 623 + + GKAY++ S RG+GE I I L+ +I+ + L+ S+ G Sbjct: 548 IFFTKLGKAYSMYVDKFPSARGYGEHITTYIPLDKEDEIINIEFANVAEHFLIASTSGKG 607 Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR 683 F++ ++IAN GK +++ K + + V + +I + + + Sbjct: 608 FVIPAEDLIANKVTGKNIF--DADDVFKFIPYDKDLKMLAVSSQGRAIIRDFESFAVLKK 665 Query: 684 GKGVRLQSY-KDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLG--WLGKRGGVGSLV 740 GKG + K + + FK + LT SAG+ + R +N + K G G L+ Sbjct: 666 GKGKAIIKLDKKDELKFIELFKPEQELTL--SAGKRFIRIDNKNFETYYTDKPSGGGVLL 723 Query: 741 PKGFPRSGK 749 P+GF + K Sbjct: 724 PQGFRKITK 732 >gi|229094605|ref|ZP_04225672.1| DNA gyrase subunit A [Bacillus cereus Rock3-42] gi|300118804|ref|ZP_07056524.1| DNA gyrase subunit A [Bacillus cereus SJ1] gi|228688852|gb|EEL42683.1| DNA gyrase subunit A [Bacillus cereus Rock3-42] gi|298723772|gb|EFI64494.1| DNA gyrase subunit A [Bacillus cereus SJ1] Length = 823 Score = 436 bits (1122), Expect = e-120, Method: Compositional matrix adjust. Identities = 255/704 (36%), Positives = 417/704 (59%), Gaps = 50/704 (7%) Query: 9 SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68 S+ + ++ +++ + +L YA+S I RA+PD+RDG KPVHRR+++AM+++G+ Sbjct: 2 SDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 61 Query: 69 GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128 A+KKSARIVGEVIGK HPHGD +VY+++VR+AQ F QRY L+ G GNFG++DGDSAAA Sbjct: 62 DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 121 Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188 RYTEARM++++ +++ + ++ +D++D Y+ + EP+V P++FPNLL NGT+GIAVGMA Sbjct: 122 MRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMA 181 Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248 T+IP H + E+ + LAL NP+I+I +L+E+I GPDFPT G+I+ R I +Y GRG Sbjct: 182 TNIPPHQLGEVIDGVLALSHNPDITIAELMEFIPGPDFPTAGLIL-GRSGIRRAYETGRG 240 Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308 +RA+ +EE G I+VTE+PYQV K+RLIEKIAEL+ K+I + D+RDES + Sbjct: 241 SIILRAKVEIEEKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRN 300 Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368 ++ R + ++L+ +++ + ++T F +NM L G PQV+ L L +L H+ Sbjct: 301 GMRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGE-PQVLNLKQNLYHYLEHQ 359 Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTE 425 + V+ RR+++ ++ + R IL+GL IA ++DE+I +IR+ D K ++ RF L+E Sbjct: 360 KVVIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLMERFGLSE 419 Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485 Q AIL++RL+ L LE +I+ E +L+ ++ ++L ++ I E+ EVKE Sbjct: 420 KQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIAELKAILADEEKVLEIIREELTEVKER 479 Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSLKSHSVD----- 539 F+ +RRT E++ ++ + +I ++ I + +++ G+I+ L + + Sbjct: 480 FND-----KRRT---EITIGGMEFIEDEDLIPEQNIAITLTHNGYIKRLPASTYKTQNRG 531 Query: 540 ---LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLL 581 + + + D ++ L T D IL + GK Y LP NLL Sbjct: 532 GRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEIPEYSRTAKGLPIINLL 591 Query: 582 SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR-KGKT 640 G GE I +I + D F++ +T + + + ++F AN R G Sbjct: 592 -GVDKGEWINAIIPIREFGD--DQFLFFTTKQGISKRTPLSSF--------ANIRTNGLI 640 Query: 641 FLKVSSEEKMKLVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSR 683 + + E+++ V +GD +VG + +LI F+ + M R Sbjct: 641 AISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGR 684 >gi|282849502|ref|ZP_06258886.1| DNA gyrase, A subunit [Veillonella parvula ATCC 17745] gi|282580439|gb|EFB85838.1| DNA gyrase, A subunit [Veillonella parvula ATCC 17745] Length = 823 Score = 436 bits (1122), Expect = e-120, Method: Compositional matrix adjust. Identities = 242/618 (39%), Positives = 364/618 (58%), Gaps = 36/618 (5%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 N+ V + ++ Y+ YA+S I RA+PD+RDG KPVHRRI++AM E G+ +KKS Sbjct: 10 NIHPVQIDKEMKNAYIDYAMSVIVMRALPDVRDGLKPVHRRILYAMHETGMTPNKPYKKS 69 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 ARIVG+V+GK HPHGD SVYD+ VRLAQ F RY L+ G GNFG+IDGDSAAA RYTE R Sbjct: 70 ARIVGDVLGKYHPHGDSSVYDATVRLAQDFNTRYLLVDGHGNFGSIDGDSAAAMRYTEVR 129 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 M ++ +L +D++ VDF Y+E EP V P+K PNLL NG+SGIAVGMAT+IP HN Sbjct: 130 MAKITTEMLADIDKETVDFMPNYDESLQEPTVLPAKIPNLLINGSSGIAVGMATNIPPHN 189 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 + E+C LIDNP++++++L+ I GPDFPTG +I+ RE I ++Y GRG ++RAR Sbjct: 190 LNEVCNGLAMLIDNPDVTVDELMTAIKGPDFPTGALIL-GREGIKKAYSTGRGSVKMRAR 248 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315 +EE+ +G IVVTEIPYQV K+R+IE IA L K I + +RDES ++ Sbjct: 249 ATIEEMSKGKHKIVVTEIPYQVNKARVIETIANLSRDKVIDGITALRDESDRQGMRIVIE 308 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 + PD+++ ++ + ++ F + M L G P+V+ L +L +L HR +V+ RR Sbjct: 309 LRADVQPDIVLNKLYKHTQLQETFGVIMLALVDGH-PRVLNLKEVLGYYLDHRLDVIVRR 367 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLTENQVDAIL 432 + F + + R IL+GLLIA +IDE+IA IR+ ++ + ++ +F L+E Q AIL Sbjct: 368 TQFELNKAEARAHILEGLLIALDHIDEVIATIRSSQTDEIARNALMQKFGLSEKQAVAIL 427 Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492 ++RLR L LE +I+ E LLA E + ++L S +Q I E+ ++K+ + Sbjct: 428 DMRLRRLTGLEREKIEEEYKELLALIEDLKAILASEARQRQIIKDELDDMKKKYGDP--- 484 Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSH--------SVDLSALH 544 RR + S D + +I E + + ++ +G+I+ + ++ + + Sbjct: 485 -RRSEITIDTSDLD----VEDLIADEEMVITLTKQGYIKRMNANVYRNQHKGGAGVIGMK 539 Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTL-----PAGNLLSGRGH----------GEA 589 KE D + +H T + +L ++ G+AY L P + RG GE+ Sbjct: 540 TKEDDYVTQIMHVRTHNTLLFFTSAGRAYRLKAYEVPEAGSRNSRGTAMVNVLPLAVGES 599 Query: 590 IQLLIDLNHNQDIVTAFV 607 + +IDL + V F+ Sbjct: 600 VTTMIDLERVHEDVNLFM 617 >gi|56418541|ref|YP_145859.1| DNA gyrase subunit A [Geobacillus kaustophilus HTA426] gi|261417506|ref|YP_003251188.1| DNA gyrase subunit A [Geobacillus sp. Y412MC61] gi|297528382|ref|YP_003669657.1| DNA gyrase subunit alpha [Geobacillus sp. C56-T3] gi|319765164|ref|YP_004130665.1| DNA gyrase subunit alpha [Geobacillus sp. Y412MC52] gi|56378383|dbj|BAD74291.1| DNA gyrase subunit A [Geobacillus kaustophilus HTA426] gi|261373963|gb|ACX76706.1| DNA gyrase, A subunit [Geobacillus sp. Y412MC61] gi|297251634|gb|ADI25080.1| DNA gyrase, A subunit [Geobacillus sp. C56-T3] gi|317110030|gb|ADU92522.1| DNA gyrase, A subunit [Geobacillus sp. Y412MC52] Length = 818 Score = 436 bits (1121), Expect = e-120, Method: Compositional matrix adjust. Identities = 231/568 (40%), Positives = 359/568 (63%), Gaps = 20/568 (3%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 ++ V++ + +L YA+S I RA+PD+RDG KPVHRRI++AM ++G+ +KKSA Sbjct: 9 IREVNISQEMRSSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMHDLGMTADKPYKKSA 68 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 RIVGEVIGK HPHGD +VYD++VR+AQ F RY L+ G GNFG+IDGD+AAA RYTEARM Sbjct: 69 RIVGEVIGKYHPHGDAAVYDTMVRMAQDFNYRYMLVDGHGNFGSIDGDAAAAMRYTEARM 128 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 +++A +L+ +++D +D++D Y+ + EPVV PS+FPNLL NG+SGIAVGMAT+IP H + Sbjct: 129 SKIAMELLRDINKDTIDYQDNYDGSEKEPVVLPSRFPNLLVNGSSGIAVGMATNIPPHQL 188 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ +A LAL NPE+++ L+EYI GPDFPT G I+ R I ++Y GRG +RA+ Sbjct: 189 GEVIDALLALSQNPEMTVADLMEYIPGPDFPTAGQII-GRSGIRKAYETGRGSITLRAKA 247 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316 +E+ G I+VTE+PYQV K++LIE+IAEL+ K+I + D+RDES ++ Sbjct: 248 EIEQQPNGKETIIVTELPYQVNKAKLIERIAELVRDKKIDGITDLRDESDRSGMRIVIEV 307 Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376 R + +++ +++ + ++T F +NM L G P+V+ L L+ +L H++ V+ RR+ Sbjct: 308 RRDANAKVVLNNLYKHTALQTSFGINMLALVNGE-PKVLNLKECLEHYLNHQKTVIRRRT 366 Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVDAILN 433 +F ++ + R IL+GL IA ++DE+I +IR + +++RFSL+E Q AIL+ Sbjct: 367 AFELKKAEARAHILEGLRIALDHLDEVIDLIRRSQTTEAAREGLMARFSLSERQAQAILD 426 Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493 +RL+ L LE +I+ E +L+ ++ +L ++ I E+ E+KE F+ Sbjct: 427 MRLQRLTGLEREKIEQEYQDLVRLIAELRGVLADEEKVLQIIRDELSEIKERFNDE---- 482 Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHF 545 RRT VS A + + +I +E + + ++++G+I RS K + +H Sbjct: 483 -RRTEI--VSGAVEQFDDEDLIPQEHVVITLTHKGYIKRLPLSTYRSQKRGGRGVQGMHT 539 Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAY 573 E D ++ L T D +L + GK Y Sbjct: 540 AEDDFVEHLLITSTHDTVLFFTNKGKVY 567 >gi|319790113|ref|YP_004151746.1| DNA gyrase, A subunit [Thermovibrio ammonificans HB-1] gi|317114615|gb|ADU97105.1| DNA gyrase, A subunit [Thermovibrio ammonificans HB-1] Length = 809 Score = 436 bits (1121), Expect = e-120, Method: Compositional matrix adjust. Identities = 267/757 (35%), Positives = 432/757 (57%), Gaps = 36/757 (4%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 E + V + ++ YL YA+S I RA+PD+RDG KPVHRRI+++M ++GL FKK Sbjct: 2 ERIVPVPIEEEMKHSYLDYAMSVIVGRALPDVRDGLKPVHRRILYSMYQLGLMPDKPFKK 61 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 SARIVGE +GK HPHGD +VYD+LVR+AQ F RYPLI GQGNFG+IDGDSAAA RYTEA Sbjct: 62 SARIVGETLGKFHPHGDTAVYDALVRMAQDFSMRYPLIEGQGNFGSIDGDSAAAMRYTEA 121 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 R++++A +L+ +++D VDF+ ++ EP V P+KFPNLL NG SGIAVGMAT+IP H Sbjct: 122 RLSKIALELLKDIEKDTVDFKPNFDGSLEEPEVLPAKFPNLLVNGASGIAVGMATNIPPH 181 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 N+ E+C+A L+D+PE + E+L+++I GPDFPTG ++ E + + Y+ GRG +RA Sbjct: 182 NISEVCKAVQYLVDHPEATTEELMQFIKGPDFPTGAEVINP-EELPKIYKKGRGSVTIRA 240 Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVL 313 + +EEV R IV+TE+PYQV K+ LI+KIAEL+ K+I + DIRDES E +R+V+ Sbjct: 241 KHTIEEV-RKRSAIVITELPYQVNKADLIKKIAELVKEKKIDGIADIRDESDREGIRVVI 299 Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373 K R P +++ ++ L+ ++T F NM L G P+++ L L+E++ RREV+ Sbjct: 300 ELK-RDATPQVVLNRLYKLTPLQTNFNFNMIALVNGE-PKLLNLKRYLEEFIGFRREVIL 357 Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV---SRFSLTENQVDA 430 RR+++ ++ + R+ IL+GL A NID ++ +++ P+ + +F L+E Q A Sbjct: 358 RRTAYLLRKAEARLHILEGLRKALENIDAVVKLVKEAPSPQEALEGLREKFELSEAQAKA 417 Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490 IL+++L+ L LE +I E L E ++ S ++Q I E+ ++ E F Sbjct: 418 ILDMKLQRLTGLEREKIDQEHAALTEEANYYRFVMESDQEQRRLIKEEMAQIIEKFGD-- 475 Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSA 542 +RRT VS+ + + ++MIE E + + ++++G++ R+ + Sbjct: 476 ---QRRTKI--VSKESEIDI-ESMIEDEEVIIFLTHKGFVARVSAGTYRTQSRSGTGVRG 529 Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQ 600 + +EGD +K + A + D +L+ + GK Y L A + + G +I+ + Sbjct: 530 IKTREGDFVKDMITASSKDYLLIFTNQGKVYWLKAYEIPKMERPSRGHSIRNFLPGMAGN 589 Query: 601 DIVTAFV----YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV 656 +IV+ + + + V+ +G E G + + +++ V V Sbjct: 590 EIVSRIIPVKEFSLNKDVFFVTQRGYVKRTPLKEFSNPRSTGINAINLEPGDRLVYVGLV 649 Query: 657 TG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVR--LQSYKDGGISDVICFKICEGLTWI 712 + D++ ++ +N + + F + + +M R +GVR L D ++ + L + Sbjct: 650 SDKDNIILISKNGRAIKFPVADVRQMGRNARGVRGILLDPDDSVVAAAVVEPEDRFLLIV 709 Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGK 749 G Y + L +RGG G + K ++GK Sbjct: 710 TEKG--YGKRVEIEEFHLQRRGGKGLIAAKLSEKTGK 744 Score = 43.1 bits (100), Expect = 0.18, Method: Compositional matrix adjust. Identities = 44/179 (24%), Positives = 81/179 (45%), Gaps = 13/179 (7%) Query: 524 ISNRGWIR--SLKS----HSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPA 577 ++ RG+++ LK S ++A++ + GD L D I+L+S +G+A P Sbjct: 610 VTQRGYVKRTPLKEFSNPRSTGINAINLEPGDRLVYVGLVSDKDNIILISKNGRAIKFPV 669 Query: 578 GNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK-LLVVSSKGNAFIVEESEIIANTR 636 ++ + ++ ++ L+ + +V A V + + LL+V+ KG VE E R Sbjct: 670 ADVRQMGRNARGVRGIL-LDPDDSVVAAAVVEPEDRFLLIVTEKGYGKRVEIEEFHLQRR 728 Query: 637 KGKTFLKVSSEEKMKLVVKVT----GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQ 690 GK + EK V T + + +V + K++ IP R +GVR+Q Sbjct: 729 GGKGLIAAKLSEKTGKVADATTLKDDEPIILVSKKGKIIRVKSADIPVYGRHTRGVRIQ 787 >gi|289208383|ref|YP_003460449.1| DNA gyrase subunit alpha [Thioalkalivibrio sp. K90mix] gi|288944014|gb|ADC71713.1| DNA gyrase, A subunit [Thioalkalivibrio sp. K90mix] Length = 870 Score = 436 bits (1121), Expect = e-120, Method: Compositional matrix adjust. Identities = 298/796 (37%), Positives = 444/796 (55%), Gaps = 83/796 (10%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 V+L +++ YL YA+S I RA+PD+RDG KPVHRR+++AM E+G D+ +KKSAR+V Sbjct: 11 VNLEDEMQQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMRELGNDYNKPYKKSARVV 70 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGD +VYD++VR+AQPF RY L GQGNFG+IDGDS AA RYTE RM ++ Sbjct: 71 GDVIGKYHPHGDSAVYDAIVRMAQPFSMRYMLADGQGNFGSIDGDSPAAMRYTEVRMARI 130 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A +L +D++ VDF D Y+ ++EP V PSKFPNLL NG++GIAVGMAT+IP HN++E+ Sbjct: 131 AAELLADIDKETVDFIDNYDGSETEPAVLPSKFPNLLVNGSAGIAVGMATNIPPHNLREV 190 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 A +ALID+PEISIE L+E++ GPDFPT GII E + E+YR GRG +RAR VE Sbjct: 191 INACVALIDDPEISIEGLMEHVPGPDFPTAGII-NGVEGVREAYRTGRGRVLIRARSHVE 249 Query: 260 EVGRGSW-CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318 + G IVVTE+PYQV K+RL EKIAEL+ KRI + ++RDES +D ++ R Sbjct: 250 PLEGGQREAIVVTELPYQVNKARLTEKIAELVKEKRIDGISELRDESDKDGMRLVIELKR 309 Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378 ++++ ++M + M+ F +N+ L G+ P+V+ L +L+ +L HRREV+ RR+ F Sbjct: 310 GEMAEVVLNHLYMHTQMQNVFGINIVALVDGQ-PKVLDLRQVLESFLRHRREVVTRRTIF 368 Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR--------------- 420 ++ R IL+GL IA NID +I +IR P K +++R Sbjct: 369 DLRKARERAHILEGLAIALANIDPVIELIRAAPNPAEAKAGLLARSWPLGVVSDMLDRAG 428 Query: 421 -------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKI 461 + L+E Q AIL+LRL L LE+ +I E LL E + Sbjct: 429 ASASRPEDLAADYGVGDDGYRLSEAQAQAILDLRLHRLTGLEQDKILDEYRELLDLIEDL 488 Query: 462 DSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPIT 521 +L SG++ +I E+ V E F RR+ E R TL+ +I +E + Sbjct: 489 LDILGSGERLQQEIRNELLAVAEQFGDE-----RRSEIRE--RQANLTLED-LIGEEDVV 540 Query: 522 VVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG--- 570 V +S+ G++ R+ + +A FKE D + L A+T D +L S+ G Sbjct: 541 VTLSHAGYVKYQPVADYRAQRRGGRGKAAASFKEEDFVDRLLVANTHDTVLCFSSRGRVY 600 Query: 571 --KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQ---DIVTAFVYDSTCKLLVVSSKGNAFI 625 K Y LP G+ S G+ I L+ L ++ I+ YD + +V+++G Sbjct: 601 WLKVYELPQGSRAS---RGKPIVNLLPLEADERINAILPVREYDPDHYVFMVTARGT--- 654 Query: 626 VEESEIIANTRKGKT-FLKVSSEEKMKLV-VKVTGDH--VAVVGENRKLLIFSIDQIPEM 681 V+++ + +R+ T + V + LV V +T V +V K + FS + + M Sbjct: 655 VKKTPLTDFSRRRSTGIIAVDLRDDDYLVDVSLTDGQMDVMLVTTAGKAVRFSENDVRPM 714 Query: 682 SRG----KGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVG 737 R +GVR++S D + + + EG + + R+ D + +RGG G Sbjct: 715 GRTACGVRGVRMES--DHRV--IALLNVAEGAALLATENGYGKRTRFDEF-PVHRRGGQG 769 Query: 738 SLVPKGFPRSGKFLSS 753 + + R+G + + Sbjct: 770 VIGIQTEGRNGPLVGA 785 >gi|91772466|ref|YP_565158.1| DNA gyrase subunit A [Methanococcoides burtonii DSM 6242] gi|91711481|gb|ABE51408.1| DNA gyrase subunit A [Methanococcoides burtonii DSM 6242] Length = 830 Score = 436 bits (1121), Expect = e-120, Method: Compositional matrix adjust. Identities = 271/765 (35%), Positives = 434/765 (56%), Gaps = 39/765 (5%) Query: 11 TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70 T E + + ++ ++ Y+ YA+S I RA+PD RDG KPVHRRI++AM E G+ + Sbjct: 24 TDTSERIVPILIQDEMKNSYIDYAMSVIVGRALPDARDGLKPVHRRILYAMKEAGMTYDK 83 Query: 71 AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130 A+KKSAR+VG+V+GK HPHGD +VYDSLVR+ Q F RYPLI GQGNFG+IDGDSAAA R Sbjct: 84 AYKKSARVVGDVLGKYHPHGDTAVYDSLVRMVQEFSLRYPLIDGQGNFGSIDGDSAAAMR 143 Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190 YTE+RM +++ +L +D++ V +R Y+ EP V P++ PNLL NG++GIAVGMAT+ Sbjct: 144 YTESRMDRISNEMLADIDKETVLYRPNYDGSLKEPTVLPARLPNLLINGSTGIAVGMATN 203 Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250 + HN+ E+ +A L LI++PE I L+E + GPDFPTGG+I+ + I +Y GRG Sbjct: 204 MAPHNLGEVIDATLMLIEDPETPISSLMEIVKGPDFPTGGVIL-GHQGIKSAYETGRGPI 262 Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310 ++RA +EE+ IVV+E+PYQV KSRLIE IA L+ K+I + D+RDES D Sbjct: 263 KIRAVTSIEEMKNDKKRIVVSELPYQVNKSRLIENIAALVREKKIVGISDLRDESDRDGI 322 Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370 V R+ +P++++ ++ + M+T F + +N+ + +P+ + L +L+ +L HR + Sbjct: 323 RVSIELTRNTNPEVILNQLYKHTQMQTTFGI-INLALVDNIPRELTLKELLQIYLEHRID 381 Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQ 427 V+ +RS F M+ D + ILKGL+IA +IDE+IA+IR D+ K +++RF L E Q Sbjct: 382 VILKRSMFDMRKADEKAHILKGLMIALDHIDEVIALIRGSNAVDEAKEGLMTRFGLDEVQ 441 Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487 AIL++RL+ L LE +I+ E L+ E + ++ S +++++ I E+ ++E F+ Sbjct: 442 AKAILDMRLQKLTGLERQKIEDEHGELVKLIEDLKDIIESDERKYSIIKEELHAIRERFA 501 Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD-------- 539 +RRT E++ + + +I E + V I+N G+I+ + + Sbjct: 502 D-----KRRT---EITGSHVEFEDEDLIPVEEVIVTITNSGYIKRMPVDTYSQQHRGGKG 553 Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLI 594 + + KE D ++ + T D ++ + G K Y LP G S + G+A+ L+ Sbjct: 554 VIGMETKEQDVVEDIFISSTHDYLMFFTNRGKVHWKKVYGLPEG---SRQSKGKAVVNLL 610 Query: 595 DLNHNQDI---VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK-GKTFLKVSSEEKM 650 DL N+ + +T ++ L + + G S+ +N RK G LK+ +++ Sbjct: 611 DLAENESVTATITVKEFEEDKFLFMATRMGTVKKTPLSD-FSNVRKAGIIALKLDEGDEL 669 Query: 651 KLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVR-LQSYKDGGISDVICFKICE 707 V G + +V + K + F + M R +GVR ++ D + + + Sbjct: 670 VNVALTDGSKEIMMVSRHGKAIRFCERDVRPMGRTARGVRGMRLTGDDIVVSLDIVDLST 729 Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752 L I G + ++ G KRGG G + R+G ++ Sbjct: 730 KLLTITENGYGKRTTFDEYRGM--KRGGQGVITIVTSLRNGPVIN 772 >gi|224372704|ref|YP_002607076.1| DNA gyrase subunit A [Nautilia profundicola AmH] gi|223588774|gb|ACM92510.1| DNA gyrase, A subunit [Nautilia profundicola AmH] Length = 816 Score = 436 bits (1120), Expect = e-120, Method: Compositional matrix adjust. Identities = 236/602 (39%), Positives = 382/602 (63%), Gaps = 32/602 (5%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 VS+ L + YL Y++S I RA+PD+RDG KPVHRRI++AM +MG+ G+A+KKSARIV Sbjct: 6 VSIEETLSKSYLEYSMSVIVGRALPDVRDGLKPVHRRILYAMHKMGITAGSAYKKSARIV 65 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGD +VY++LVR+AQPF R PLI GQGNFG+IDGD+AAA RYTEAR+T++ Sbjct: 66 GDVIGKYHPHGDSAVYEALVRMAQPFSMRMPLIDGQGNFGSIDGDNAAAMRYTEARLTKI 125 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 AE +L+ +D+D VDF Y+ + EPVV P++FPNLL NG+SGIAVGMAT+IP HN++E+ Sbjct: 126 AEELLKDIDKDTVDFIPNYDGTEREPVVLPARFPNLLVNGSSGIAVGMATNIPPHNLEEL 185 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 +A + +IDN + ++E +L+++ GPDFPTGG I + I+E+Y+ GRG ++RA+ +E Sbjct: 186 IDALIYMIDNKDATLEDILQFVKGPDFPTGGTIF-GKSGIIEAYKTGRGSIKIRAKHHIE 244 Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLFPKNR 318 G IV+ E+P+QV K++LIEKI++L+ K + + ++RDES E +R+V+ K Sbjct: 245 HKG-NKEVIVIDELPFQVNKAKLIEKISDLVKDKVVEGISEVRDESDREGIRVVIELKKD 303 Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378 ++ ++++ +++ + M+ F +NM + + P++ L +L ++ HR+ V+ RR+ + Sbjct: 304 AM-SEIILNNLYKHTQMQVSFGINM-LGIYDKQPKLFNLFELLDIFIKHRKTVVIRRTIY 361 Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVDAILNLR 435 ++ +R IL+GLLIA NIDE++ II+ + K +++RF LT+ Q AIL++R Sbjct: 362 ELEEAKKRAHILEGLLIALANIDEVVEIIKKSNDTKEAKENLINRFELTDVQAQAILDMR 421 Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495 L L LE ++++E L+ + E ++S+L I E+ E+K+ + Sbjct: 422 LARLTSLEVEKLENEYKELMEKIEYLNSILKDENILNGVIKDELLEIKKKYPTP------ 475 Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS--------ALHFKE 547 + A + +I E + V I++RG+++ + + + AL E Sbjct: 476 --RLTNIEEDYDAIDIEDLIPNEEMVVTITHRGYVKRVPLKAYERQNRGGKGKKALTIYE 533 Query: 548 GDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602 D ++ A++ D +++++ G K Y +P G+ S G+AI LI+L+ ++ I Sbjct: 534 DDFIEDFYVANSHDTLMIITDRGQLHWLKVYRIPEGSRTS---KGKAIVNLINLDKDEKI 590 Query: 603 VT 604 T Sbjct: 591 QT 592 >gi|229176170|ref|ZP_04303662.1| DNA gyrase subunit A [Bacillus cereus MM3] gi|228607329|gb|EEK64659.1| DNA gyrase subunit A [Bacillus cereus MM3] Length = 823 Score = 436 bits (1120), Expect = e-120, Method: Compositional matrix adjust. Identities = 254/704 (36%), Positives = 417/704 (59%), Gaps = 50/704 (7%) Query: 9 SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68 S+ + ++ +++ + +L YA+S I RA+PD+RDG KPVHRR+++AM+++G+ Sbjct: 2 SDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 61 Query: 69 GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128 A+KKSARIVGEVIGK HPHGD +VY+++VR+AQ F QRY L+ G GNFG++DGDSAAA Sbjct: 62 DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 121 Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188 RYTEARM++++ +++ + ++ +D++D Y+ + EP+V P++FPNLL NGT+GIAVGMA Sbjct: 122 MRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMA 181 Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248 T+IP H + E+ + LAL NP+I+I +L+E+I GPDFPT G+I+ R I +Y GRG Sbjct: 182 TNIPPHQLGEVIDGVLALSHNPDITIAELMEFIPGPDFPTAGLIL-GRSGIRRAYETGRG 240 Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308 +RA+ +EE G I+VTE+PYQV K+RLIEKIAEL+ K+I + D+RDES + Sbjct: 241 SIMLRAKVEIEEKSNGKQSILVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRN 300 Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368 ++ R + ++L+ +++ + ++T F +NM L G PQV+ L L +L H+ Sbjct: 301 GMRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGE-PQVLNLKQNLYHYLEHQ 359 Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTE 425 + V+ RR+++ ++ + R IL+GL IA ++DE+I +IR+ D K ++ RF L+E Sbjct: 360 KVVIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQSLMERFGLSE 419 Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485 Q AIL++RL+ L LE +I+ E +L+ ++ ++L ++ I E+ EVKE Sbjct: 420 KQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIAELKAILADEEKVLEIIREELTEVKER 479 Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSLKSHSVD----- 539 F+ +RRT E++ ++ + +I ++ I + +++ G+I+ L + + Sbjct: 480 FND-----KRRT---EITIGGMEFIEDEDLIPEQNIAITLTHNGYIKRLPASTYKTQNRG 531 Query: 540 ---LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLL 581 + + + D ++ L T D IL + GK Y +P NLL Sbjct: 532 GRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEIPEYSRTAKGIPIINLL 591 Query: 582 SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR-KGKT 640 G GE I +I + D F++ +T + + + ++F AN R G Sbjct: 592 -GVDKGEWINAIIPIREFGD--DEFLFFTTKQGISKRTPLSSF--------ANIRTNGLI 640 Query: 641 FLKVSSEEKMKLVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSR 683 + + E+++ V +GD +VG + +LI F+ + M R Sbjct: 641 AISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGR 684 >gi|237736254|ref|ZP_04566735.1| DNA gyrase subunit A [Fusobacterium mortiferum ATCC 9817] gi|229421602|gb|EEO36649.1| DNA gyrase subunit A [Fusobacterium mortiferum ATCC 9817] Length = 843 Score = 436 bits (1120), Expect = e-120, Method: Compositional matrix adjust. Identities = 229/591 (38%), Positives = 372/591 (62%), Gaps = 25/591 (4%) Query: 26 LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85 ++E YL Y++S I RA+PD+RDG KPVHRRI+ AM+E+G+ F +KKSARIVGEV+GK Sbjct: 13 MKESYLDYSMSVIVSRALPDVRDGMKPVHRRILFAMNELGMSFDKPYKKSARIVGEVLGK 72 Query: 86 LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145 HPHGD +VY ++VR+AQ F RYPLISG GNFG+IDGDSAAA RYTEARM +++ +L+ Sbjct: 73 YHPHGDSAVYSTMVRMAQDFNYRYPLISGHGNFGSIDGDSAAAMRYTEARMAKISNELLE 132 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 +D++ +DFR +++ EP V P+K PNLL NG +GIAVGMAT+IP HN+ E+ + LA Sbjct: 133 DIDKNTIDFRKNFDDSLDEPTVLPAKLPNLLLNGATGIAVGMATNIPPHNLGEVVDGTLA 192 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265 LIDNPE++ L+EYI GPDFPTGGII + + I ++Y GRG RVR + +EE+ G Sbjct: 193 LIDNPELTPLDLMEYIKGPDFPTGGII-DGDKGIKDAYMTGRGKVRVRGKIEIEELKNGK 251 Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKNRSLDPDL 324 I++ EIPYQ+ K+ LIEKIAEL+ K+I + D+RDES D +R+V+ K + +P+L Sbjct: 252 INIIIREIPYQLNKATLIEKIAELVKDKKIVGISDLRDESDRDGIRVVIELK-KGEEPEL 310 Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384 ++ ++ +D+++ F + M L + P+V+ L I++E++ HR EV+ RR+ F + + Sbjct: 311 ILNKLYKYTDLQSTFGIIMLAL-VNNTPRVLNLKQIIEEYIKHRFEVITRRTQFNLDKAE 369 Query: 385 RRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAILNLRLRSLRK 441 +R IL+G IA NID II ++R + ++ + +V ++ T+ Q AIL+++L+ L Sbjct: 370 KRAHILQGYRIALNNIDRIIELVRAATDGNQAREQLVEKYGFTDIQARAILDMKLQRLTG 429 Query: 442 LEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCE 501 LE ++++E + ++ +L + + + + E++E+K+ + RRT Sbjct: 430 LERDKVEAEYQEIEKYISELREILANDSKIYEIMKTELQELKDKYDDD-----RRTV--- 481 Query: 502 VSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSVDLSALHFKEGDSLKI 553 + + K + +I+ E + + +N+G+++ + K +++ + E D ++ Sbjct: 482 IEKERKEINPEDLIKDEEVILTFTNKGYVKRMELSKYKAQKRGGRGVASQNTVEDDFVEN 541 Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDI 602 A D +++ + G+ Y + + S + G I +I+L ++ I Sbjct: 542 IESAMNLDTLMIFTNQGRVYNIKVYEIPETSKQSRGRLIGNIINLKTDEKI 592 >gi|228994213|ref|ZP_04154113.1| DNA gyrase subunit A [Bacillus pseudomycoides DSM 12442] gi|228765665|gb|EEM14319.1| DNA gyrase subunit A [Bacillus pseudomycoides DSM 12442] Length = 822 Score = 436 bits (1120), Expect = e-119, Method: Compositional matrix adjust. Identities = 226/569 (39%), Positives = 365/569 (64%), Gaps = 22/569 (3%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 ++ +++ + +L YA+S I RA+PD+RDG KPVHRR+++AM+++G+ A+KKSA Sbjct: 10 IREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITADKAYKKSA 69 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 RIVGEVIGK HPHGD +VY+++VR+AQ F QRY L+ G GNFG++DGDSAAA RYTEARM Sbjct: 70 RIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAAMRYTEARM 129 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 ++++ +L+ + ++ +D++D Y+ + EP+V P++FPNLL NGT+GIAVGMAT+IP H + Sbjct: 130 SKISMELLRDITKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMATNIPPHQL 189 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ + LAL NP+I+I +L+E+I GPDFPT G+I+ R I +Y GRG +RA+ Sbjct: 190 GEVIDGVLALSHNPDITIAELMEFIPGPDFPTAGLIL-GRSGIRRAYETGRGSIILRAKV 248 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316 +EE G I+VTE+PYQV K+RLIEKIAEL+ K+I + D+RDES + ++ Sbjct: 249 EIEEKANGKQAIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRNGMRIVMEV 308 Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376 R + ++L+ +++ + ++T F +NM L G PQV+ L L +L H++ V+ RR+ Sbjct: 309 RRDANANVLLNNLYKHTALQTSFGINMLSLVNGE-PQVLNLKQTLYYYLEHQQVVIRRRT 367 Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAILN 433 ++ ++ + R IL+GL IA ++DE+I +IR+ D K ++ RF L+E Q AIL+ Sbjct: 368 AYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLMERFGLSEKQAQAILD 427 Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493 +RL+ L LE +I+ E +L+ ++ ++L ++ I E+ EVKE F+ Sbjct: 428 MRLQRLTGLEREKIEQEYQDLMKLIAELKAILADEEKVLEIIREELTEVKERFND----- 482 Query: 494 RRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSLKSHSVD--------LSALH 544 +RRT E++ +++ + +I ++ I + +++ G+I+ L + + + + Sbjct: 483 KRRT---EITIGGMESIEDEDLIPEQNIAITLTHNGYIKRLPASTYKTQNRGGRGVQGMG 539 Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAY 573 + D ++ L T D IL + GK Y Sbjct: 540 TNDDDFVEHLLTTSTHDHILFFTNKGKVY 568 >gi|289551839|ref|YP_003472743.1| DNA gyrase subunit A [Staphylococcus lugdunensis HKU09-01] gi|289181370|gb|ADC88615.1| DNA gyrase subunit A [Staphylococcus lugdunensis HKU09-01] Length = 894 Score = 436 bits (1120), Expect = e-119, Method: Compositional matrix adjust. Identities = 251/653 (38%), Positives = 388/653 (59%), Gaps = 31/653 (4%) Query: 26 LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85 + E +L YA+S I RA+PD+RDG KPVHRRI++ ++E G+ +KKSARIVG+V+GK Sbjct: 18 MRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKSARIVGDVMGK 77 Query: 86 LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145 HPHGD S+YD++VR+AQ F RYPL+ GQGNFG++DGD AAA RYTEA+MT++ +L+ Sbjct: 78 YHPHGDSSIYDAMVRMAQTFSYRYPLVDGQGNFGSMDGDGAAAMRYTEAKMTKITLELLR 137 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 +++D +DF D Y+ + EP V P++FPNLL NG SGIAVGMAT+IP HN+ E+ + L Sbjct: 138 DINKDTIDFLDNYDGTEREPAVLPARFPNLLVNGASGIAVGMATNIPPHNLTEVIDGVLN 197 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265 L NP+I+I +L+E I GPDFPT GII+ + I +Y GRG ++RAR +EE G G Sbjct: 198 LSKNPDITIAELMEDIKGPDFPTSGIIL-GKSGIRRAYETGRGSIQMRARAEIEERGGGR 256 Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA--EDVRIVLFPKNRSLDPD 323 IVVTEIPYQV K+R+IEKIAEL+ K++ + D+RDE++ VR+V+ + + + + Sbjct: 257 QRIVVTEIPYQVNKARMIEKIAELVRDKKVDGITDLRDETSLRTGVRVVIDIR-KDANAN 315 Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383 +++ +++ L+ ++T F NM L GR P+++ L L ++L H++ V+ RR+ + ++ Sbjct: 316 VILNNLYKLTPLQTSFGANMIALVDGR-PKLINLKEALVQYLEHQKVVVRRRTEYNLRKA 374 Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVDAILNLRLRSLR 440 R IL+GL IA +IDEII+ IR + K M S RF LTE Q AIL++RLR L Sbjct: 375 KDRAHILEGLRIALDHIDEIISTIRESETDKVAMTSLQERFKLTERQAQAILDMRLRRLT 434 Query: 441 KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500 LE +I++E + LLA ++++ +L + + E+ E+KE F G R T Sbjct: 435 GLERDKIEAEYNELLAYIDELERILADEEVLLQLVRDELTEIKERF------GDERRTEI 488 Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DLSALHFKEGDSLK 552 ++ D + +I +E I + +S+ +I+ L + + ++ E D + Sbjct: 489 QLGGIDNIE-DEDLIPEEQIVITLSHNNYIKRLPVSTYRAQNRGGRGVQGMNTLEEDFVS 547 Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAFVYDS 610 + T D +L + G+ Y L + LS + G + I+L +++ I T + Sbjct: 548 QLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIELANDESISTMIAVND 607 Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAV 663 + S+GN I I F ++ K+ + K + +AV Sbjct: 608 ------LESEGNYLIFATKNGIVKRSALSNFSHINKNGKIAIGFKEDDELIAV 654 >gi|229164445|ref|ZP_04292373.1| DNA gyrase subunit A [Bacillus cereus R309803] gi|228619050|gb|EEK75948.1| DNA gyrase subunit A [Bacillus cereus R309803] Length = 823 Score = 436 bits (1120), Expect = e-119, Method: Compositional matrix adjust. Identities = 256/704 (36%), Positives = 417/704 (59%), Gaps = 50/704 (7%) Query: 9 SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68 S+ + ++ +++ + +L YA+S I RA+PD+RDG KPVHRR+++AM+++G+ Sbjct: 2 SDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 61 Query: 69 GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128 A+KKSARIVGEVIGK HPHGD +VY+++VR+AQ F QRY L+ G GNFG++DGDSAAA Sbjct: 62 DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 121 Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188 RYTEARM++++ +++ + ++ +D++D Y+ + EPVV P++FPNLL NGT+GIAVGMA Sbjct: 122 MRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPVVLPARFPNLLVNGTTGIAVGMA 181 Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248 T+IP H + E+ + LAL NP+I+I +L+EYI GPDFPT G+I+ R I +Y GRG Sbjct: 182 TNIPPHQLGEVIDGVLALSHNPDITIAELMEYIPGPDFPTSGLIL-GRSGIRRAYETGRG 240 Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308 +RA+ +EE G I+VTE+PYQV K+RLIEKIAEL+ K+I + D+RDES + Sbjct: 241 SIILRAKVEIEERANGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRN 300 Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368 ++ R + ++L+ +++ + ++T F +NM L G PQV+ L L +L H+ Sbjct: 301 GMRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGE-PQVLNLKQNLYYYLEHQ 359 Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTE 425 + V+ RR+++ ++ + R IL+GL IA ++DE+I +IR+ D K ++ RF L+E Sbjct: 360 KVVIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLMERFGLSE 419 Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485 Q AIL++RL+ L LE +I+ E +L+ ++ ++L ++ I E+ EVK+ Sbjct: 420 KQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIAELKAILADEEKVLEIIREELTEVKDR 479 Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSLKSHSVD----- 539 F+ +RRT E++ ++ + +I ++ I + +++ G+I+ L + + Sbjct: 480 FND-----KRRT---EITIGGMEFIEDEDLIPEQNIAITLTHNGYIKRLPASTYKTQNRG 531 Query: 540 ---LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLL 581 + + + D ++ L T D IL + GK Y LP NLL Sbjct: 532 GRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEIPEYSRTAKGLPIINLL 591 Query: 582 SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR-KGKT 640 G GE I +I + D F++ +T + + + ++F AN R G Sbjct: 592 -GVDKGEWINAIIPIREFGD--DQFLFFTTKQGISKRTPLSSF--------ANIRTNGLI 640 Query: 641 FLKVSSEEKMKLVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSR 683 + + E+++ V +GD +VG + +LI F+ + M R Sbjct: 641 AISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGR 684 >gi|228995402|ref|ZP_04155074.1| DNA gyrase subunit A [Bacillus mycoides Rock3-17] gi|229003016|ref|ZP_04160875.1| DNA gyrase subunit A [Bacillus mycoides Rock1-4] gi|228758244|gb|EEM07430.1| DNA gyrase subunit A [Bacillus mycoides Rock1-4] gi|228764355|gb|EEM13230.1| DNA gyrase subunit A [Bacillus mycoides Rock3-17] Length = 821 Score = 436 bits (1120), Expect = e-119, Method: Compositional matrix adjust. Identities = 226/569 (39%), Positives = 365/569 (64%), Gaps = 22/569 (3%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 ++ +++ + +L YA+S I RA+PD+RDG KPVHRR+++AM+++G+ A+KKSA Sbjct: 10 IREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITADKAYKKSA 69 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 RIVGEVIGK HPHGD +VY+++VR+AQ F QRY L+ G GNFG++DGDSAAA RYTEARM Sbjct: 70 RIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAAMRYTEARM 129 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 ++++ +L+ + ++ +D++D Y+ + EP+V P++FPNLL NGT+GIAVGMAT+IP H + Sbjct: 130 SKISMELLRDITKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMATNIPPHQL 189 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ + LAL NP+I+I +L+E+I GPDFPT G+I+ R I +Y GRG +RA+ Sbjct: 190 GEVIDGVLALSHNPDITIAELMEFIPGPDFPTAGLIL-GRSGIRRAYETGRGSIILRAKV 248 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316 +EE G I+VTE+PYQV K+RLIEKIAEL+ K+I + D+RDES + ++ Sbjct: 249 EIEEKANGKQAIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRNGMRIVMEV 308 Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376 R + ++L+ +++ + ++T F +NM L G PQV+ L L +L H++ V+ RR+ Sbjct: 309 RRDANANVLLNNLYKHTALQTSFGINMLSLVNGE-PQVLNLKQTLYYYLEHQQVVIRRRT 367 Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAILN 433 ++ ++ + R IL+GL IA ++DE+I +IR+ D K ++ RF L+E Q AIL+ Sbjct: 368 AYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLMERFGLSEKQAQAILD 427 Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493 +RL+ L LE +I+ E +L+ ++ ++L ++ I E+ EVKE F+ Sbjct: 428 MRLQRLTGLEREKIEQEYQDLMKLIAELKAILADEEKVLEIIREELTEVKERFND----- 482 Query: 494 RRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSLKSHSVD--------LSALH 544 +RRT E++ +++ + +I ++ I + +++ G+I+ L + + + + Sbjct: 483 KRRT---EITIGGMESIEDEDLIPEQNIAITLTHNGYIKRLPASTYKTQNRGGRGVQGMG 539 Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAY 573 + D ++ L T D IL + GK Y Sbjct: 540 TNDDDFVEHLLTTSTHDHILFFTNKGKVY 568 >gi|229035152|ref|ZP_04189098.1| DNA gyrase subunit A [Bacillus cereus AH1271] gi|228728218|gb|EEL79248.1| DNA gyrase subunit A [Bacillus cereus AH1271] Length = 823 Score = 436 bits (1120), Expect = e-119, Method: Compositional matrix adjust. Identities = 254/704 (36%), Positives = 417/704 (59%), Gaps = 50/704 (7%) Query: 9 SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68 S+ + ++ +++ + +L YA+S I RA+PD+RDG KPVHRR+++AM+++G+ Sbjct: 2 SDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 61 Query: 69 GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128 A+KKSARIVGEVIGK HPHGD +VY+++VR+AQ F QRY L+ G GNFG++DGDSAAA Sbjct: 62 DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 121 Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188 RYTEARM++++ +++ + ++ +D++D Y+ + EP+V P++FPNLL NGT+GIAVGMA Sbjct: 122 MRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMA 181 Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248 T+IP H + E+ + LAL NP+I+I +L+E+I GPDFPT G+I+ R I +Y GRG Sbjct: 182 TNIPPHQLGEVIDGVLALSHNPDITIAELMEFIPGPDFPTAGLIL-GRSGIRRAYETGRG 240 Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308 +RA+ +EE G I+VTE+PYQV K+RLIEKIAEL+ K+I + D+RDES + Sbjct: 241 SIMLRAKVEIEEKSNGKQSILVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRN 300 Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368 ++ R + ++L+ +++ + ++T F +NM L G PQV+ L L +L H+ Sbjct: 301 GMRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGE-PQVLNLKQNLYHYLEHQ 359 Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTE 425 + V+ RR+++ ++ + R IL+GL IA ++DE+I +IR+ D K ++ RF L+E Sbjct: 360 KVVIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLMERFGLSE 419 Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485 Q AIL++RL+ L LE +I+ E +L+ ++ ++L ++ I E+ EVKE Sbjct: 420 KQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIAELKAILADEEKVLEIIREELTEVKER 479 Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSLKSHSVD----- 539 F+ +RRT E++ ++ + +I ++ I + +++ G+I+ L + + Sbjct: 480 FND-----KRRT---EITIGGMEFIEDEDLIPEQNIAITLTHNGYIKRLPASTYKTQNRG 531 Query: 540 ---LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLL 581 + + + D ++ L T D IL + GK Y +P NLL Sbjct: 532 GRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEIPEYSRTAKGIPIINLL 591 Query: 582 SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR-KGKT 640 G GE I +I + D F++ +T + + + ++F AN R G Sbjct: 592 -GVDKGEWINAIIPIREFGD--DEFLFFTTKQGISKRTPLSSF--------ANIRTNGLI 640 Query: 641 FLKVSSEEKMKLVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSR 683 + + E+++ V +GD +VG + +LI F+ + M R Sbjct: 641 AISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGR 684 >gi|315659990|ref|ZP_07912848.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Staphylococcus lugdunensis M23590] gi|315494891|gb|EFU83228.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Staphylococcus lugdunensis M23590] Length = 894 Score = 435 bits (1119), Expect = e-119, Method: Compositional matrix adjust. Identities = 251/653 (38%), Positives = 388/653 (59%), Gaps = 31/653 (4%) Query: 26 LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85 + E +L YA+S I RA+PD+RDG KPVHRRI++ ++E G+ +KKSARIVG+V+GK Sbjct: 18 MRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKSARIVGDVMGK 77 Query: 86 LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145 HPHGD S+YD++VR+AQ F RYPL+ GQGNFG++DGD AAA RYTEA+MT++ +L+ Sbjct: 78 YHPHGDSSIYDAMVRMAQTFSYRYPLVDGQGNFGSMDGDGAAAMRYTEAKMTKITLELLR 137 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 +++D +DF D Y+ + EP V P++FPNLL NG SGIAVGMAT+IP HN+ E+ + L Sbjct: 138 DINKDTIDFLDNYDGTEREPAVLPARFPNLLVNGASGIAVGMATNIPPHNLTEVIDGVLN 197 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265 L NP+I+I +L+E I GPDFPT GII+ + I +Y GRG ++RAR +EE G G Sbjct: 198 LSKNPDITIAELMEDIKGPDFPTSGIIL-GKSGIRRAYETGRGSIQMRARAEIEERGGGR 256 Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA--EDVRIVLFPKNRSLDPD 323 IVVTEIPYQV K+R+IEKIAEL+ K++ + D+RDE++ VR+V+ + + + + Sbjct: 257 QRIVVTEIPYQVNKARMIEKIAELVRDKKVDGITDLRDETSLRTGVRVVIDIR-KDANAN 315 Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383 +++ +++ L+ ++T F NM L GR P+++ L L ++L H++ V+ RR+ + ++ Sbjct: 316 VILNNLYKLTPLQTSFGANMIALVDGR-PKLINLKEALVQYLEHQKVVVRRRTEYNLRKA 374 Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVDAILNLRLRSLR 440 R IL+GL IA +IDEII+ IR + K M S RF LTE Q AIL++RLR L Sbjct: 375 KDRAHILEGLRIALDHIDEIISTIRESETDKVAMTSLQERFKLTERQAQAILDMRLRRLT 434 Query: 441 KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500 LE +I++E + LLA ++++ +L + + E+ E+KE F G R T Sbjct: 435 GLERDKIEAEYNELLAYIDELERILADEEVLLQLVRDELTEIKERF------GDERRTEI 488 Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DLSALHFKEGDSLK 552 ++ D + +I +E I + +S+ +I+ L + + ++ E D + Sbjct: 489 QLGGIDNIE-DEDLIPEEQIVITLSHNNYIKRLPVSTYRAQNRGGRGVQGMNTLEEDFVS 547 Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAFVYDS 610 + T D +L + G+ Y L + LS + G + I+L +++ I T + Sbjct: 548 QLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIELANDESISTMIAVND 607 Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAV 663 + S+GN I I F ++ K+ + K + +AV Sbjct: 608 ------LESEGNYLIFATKNGIVKRSALSNFSHINKNGKIAIGFKEDDELIAV 654 >gi|229015411|ref|ZP_04172417.1| DNA gyrase subunit A [Bacillus cereus AH1273] gi|229026935|ref|ZP_04183258.1| DNA gyrase subunit A [Bacillus cereus AH1272] gi|228734393|gb|EEL85064.1| DNA gyrase subunit A [Bacillus cereus AH1272] gi|228745890|gb|EEL95886.1| DNA gyrase subunit A [Bacillus cereus AH1273] Length = 823 Score = 435 bits (1119), Expect = e-119, Method: Compositional matrix adjust. Identities = 254/704 (36%), Positives = 415/704 (58%), Gaps = 50/704 (7%) Query: 9 SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68 S+ + ++ +++ + +L YA+S I RA+PD+RDG KPVHRR+++AM+++G+ Sbjct: 2 SDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 61 Query: 69 GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128 A+KKSARIVGEVIGK HPHGD +VY+++VR+AQ F QRY L+ G GNFG++DGDSAAA Sbjct: 62 DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 121 Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188 RYTEARM++++ +++ + ++ +D++D Y+ + EP+V P++FPNLL NGT+GIAVGMA Sbjct: 122 MRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMA 181 Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248 T+IP H + E+ + LAL NP+I+I +L+E+I GPDFPT G+I+ R I +Y GRG Sbjct: 182 TNIPPHQLGEVIDGVLALSHNPDITIAELMEFIPGPDFPTAGLIL-GRSGIRRAYETGRG 240 Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308 +RA+ +EE G I+VTE+PYQV K+RLIEKIAEL+ K+I + D+RDES + Sbjct: 241 SIMLRAKVEIEEKSNGKQSILVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRN 300 Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368 ++ R + ++L+ +++ + ++T F +NM L G PQV+ L L +L H+ Sbjct: 301 GMRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGE-PQVLNLKQNLYHYLEHQ 359 Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTE 425 + V+ RR+++ ++ + R IL+GL IA ++DE+I +IR D K ++ RF L+E Sbjct: 360 KVVIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRGSKTADIAKQGLMERFGLSE 419 Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485 Q AIL++RL+ L LE +I+ E L+ ++ ++L ++ I E+ EVKE Sbjct: 420 KQAQAILDMRLQRLTGLEREKIEQEYQELMKLIAELKAILADEEKVLEIIREELTEVKER 479 Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSLKSHSVD----- 539 F+ +RRT E++ ++ + +I ++ I + +++ G+I+ L + + Sbjct: 480 FND-----KRRT---EITIGGMEFIEDEDLIPEQNIAITLTHNGYIKRLPASTYKTQNRG 531 Query: 540 ---LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLL 581 + + + D ++ L T D IL + GK Y +P NLL Sbjct: 532 GRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEIPEYSRTAKGIPIINLL 591 Query: 582 SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR-KGKT 640 G GE I +I + D F++ +T + + + ++F AN R G Sbjct: 592 -GVDKGEWINAIIPIREFGD--DQFLFFTTKQGISKRTPLSSF--------ANIRTNGLI 640 Query: 641 FLKVSSEEKMKLVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSR 683 + + E+++ V +GD +VG + +LI F+ + M R Sbjct: 641 AISLREEDELISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGR 684 >gi|187931348|ref|YP_001891332.1| DNA topoisomerase IV subunit A [Francisella tularensis subsp. mediasiatica FSC147] gi|187712257|gb|ACD30554.1| DNA topoisomerase IV, A subunit [Francisella tularensis subsp. mediasiatica FSC147] Length = 741 Score = 435 bits (1119), Expect = e-119, Method: Compositional matrix adjust. Identities = 261/731 (35%), Positives = 415/731 (56%), Gaps = 24/731 (3%) Query: 27 EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86 E+ YL Y++ I +RA+P + DG KPV RRII+AMSE+GL + +KKSAR VG+V+GK Sbjct: 18 EQAYLNYSMYVILDRALPHISDGLKPVQRRIIYAMSEIGLSHLSKYKKSARTVGDVLGKY 77 Query: 87 HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQVAELILQ 145 HPHGD + Y+++V +AQ F RYP I GQGN+G+ID S AA RYTE+R+++ A L+L Sbjct: 78 HPHGDSACYEAMVLMAQDFSYRYPFIDGQGNWGSIDDPKSFAAMRYTESRLSKYAVLLLD 137 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 + + VD+ ++ EP + P++ PN+L NG GIAVGM+T IP HN+ EI A L Sbjct: 138 ELKKGTVDWAKNFDGTMDEPKLLPAQVPNILLNGAMGIAVGMSTYIPPHNITEIINACLQ 197 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265 L+ P +IE++LE + PD+P G I+ S+E I + Y+ G G R +A + + G Sbjct: 198 LLSKPNSTIEEILEIVEAPDYPGGANIISSKEEIADVYKSGNGSIRQQAVYEYDNHGN-- 255 Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES--AEDVRIVLFPKNRSLDPD 323 +V+T++P+QV + ++E+IA + ++I +++I+DES E V+IVL+ + Sbjct: 256 --VVITKLPHQVSSAAVMEQIANELKQQKITWIKNIQDESDDKEPVKIVLYSATIKKNIK 313 Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383 +M + +D+E F +NMN++ + PQV L IL EWL +R+ L RR + + Sbjct: 314 KIMGHLLATTDLEKSFRVNMNMIGLDNRPQVKNLLDILNEWLEYRKHTLRRRLQTSLDKV 373 Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLE 443 R+ IL+GLLIA+LNIDE+I IIRN D P + +RF+L+E Q +AILN+RLR L K+E Sbjct: 374 LDRLHILEGLLIAFLNIDEVIDIIRNYDDPSGELQTRFTLSEIQAEAILNIRLRKLAKIE 433 Query: 444 EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVS 503 E +IK E L E+E ++ LNS + N + E +++ TD G R + V+ Sbjct: 434 EIEIKKEQKELQKERELLEGYLNSEVKFRNLMKKEFKQI------LTDFGDSRRSKIIVA 487 Query: 504 RADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRI 563 + ++ ++ E +T+++S GWIR K ++D + L +K D + + ++ Sbjct: 488 EKAQVLEEKDLMPSEKVTIILSKAGWIRCAKGENIDPAGLSYKPEDKPFLVTTGNGNIKL 547 Query: 564 LLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNA 623 + S GKAY++ L S RG+GE I I L+ I++ ++ L+ S G A Sbjct: 548 VFFSKLGKAYSMYIDKLPSARGYGEHITTYIPLDKQDQIISMAFVNAAGYFLIASESGKA 607 Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR 683 F++ ++I N GK +++ K + + V + +I + + Sbjct: 608 FVIPAEDLITNKVTGKNIF--DADDVFKFIPYDKDLKMLAVSSQGRAIIRDFASFALLKK 665 Query: 684 GKG---VRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNR--SENDLLGWLGKRGGVGS 738 GKG +RL K + + F+ + LT +AG+ + R S+N + K G G Sbjct: 666 GKGKSIIRLD--KKDKLKFIELFRANQELTL--NAGKRFIRIDSKNIETYYSDKPSGGGV 721 Query: 739 LVPKGFPRSGK 749 L+P+GF + K Sbjct: 722 LLPQGFRKITK 732 >gi|78045002|ref|YP_361486.1| DNA gyrase subunit A [Carboxydothermus hydrogenoformans Z-2901] gi|77997117|gb|ABB16016.1| DNA gyrase, A subunit [Carboxydothermus hydrogenoformans Z-2901] Length = 812 Score = 435 bits (1119), Expect = e-119, Method: Compositional matrix adjust. Identities = 263/692 (38%), Positives = 408/692 (58%), Gaps = 32/692 (4%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 V V L ++ YL YA+S I RA+PD+RDG KPVHRRI++AM +G+ +KSA Sbjct: 7 VLPVKLEEEMKSSYLDYAMSVIVGRALPDVRDGLKPVHRRILYAMHILGMTPDKPHRKSA 66 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 IVGEV+GK HPHGD +VYD++VR+AQ F RYPLI G GNFG++DGDSAAA RYTEARM Sbjct: 67 HIVGEVLGKFHPHGDVAVYDAMVRMAQDFSTRYPLIDGHGNFGSVDGDSAAAMRYTEARM 126 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 ++ +L+ +D++ VDF Y+ EPVV PS+ PNLL NG+SGIAVGMAT+IP HN+ Sbjct: 127 AKITVEMLRDIDKETVDFMPNYDNSTKEPVVLPSRIPNLLVNGSSGIAVGMATNIPPHNL 186 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 +E+ + + +ID+PE+ I +L++ I GPDFPTGG I+ R+ I ++Y GRG +VRA Sbjct: 187 REVIDGVVKMIDDPEVEIGELMKIIKGPDFPTGGKIM-GRQGIRQAYTTGRGTIKVRAVT 245 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFP 315 E++ G I+VTE+PYQV K++LIEKIAEL+ K+I + D+RDES + +RIV+ Sbjct: 246 TFEKLSGGKTAIIVTELPYQVNKAKLIEKIAELVRDKKIDGIADLRDESDRKGMRIVIEL 305 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 K R +P +++ +F + ++ F + M L + P+++ L IL +L H+++V+ RR Sbjct: 306 K-RDANPQVVLNQLFKHTQLQDTFGIIMLAL-VDNQPRILNLKEILFYYLEHQKDVVTRR 363 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAIL 432 + + + + R IL+GL IA N+DE+I IIR D + ++SRF LTE Q AIL Sbjct: 364 TRYDLNKAEERAHILEGLKIALANLDEVIKIIRGSKDVDTAREGLMSRFGLTEKQAQAIL 423 Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492 ++RL+ L LE +I E L+ + E +S+L + I E+ E+KE + + Sbjct: 424 DMRLQRLTALEREKIDEEYRELIKKIEYFNSILADERVLLGVIRQELLEIKEKYGDA--- 480 Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD--------LSALH 544 RRT +++ + ++ +I +E + + I+++G+I+ L + ++A+ Sbjct: 481 --RRT---QITNEESIFDEEDLIAEEDMVITITHQGYIKRLPVDTYKNQRRGGRGVTAMA 535 Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEAIQLLIDLNHNQDI 602 KE D ++ T + +L + GK Y L + +GR G I L+ ++ ++ I Sbjct: 536 TKEEDFVRHLFVTSTHNYLLFFTNKGKVYRLKVHEIPEAGRQAKGTPIVNLLYVDQDERI 595 Query: 603 VTAFV----YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG 658 TA + + L +V+ G SE ++ R G L + +K+ V TG Sbjct: 596 -TAIIPVKEFTDDHYLFMVTKNGIVKKTVLSEYDSSRRDGIIALSLEEGDKLIDVKLSTG 654 Query: 659 DHVAVVGENRKLLI-FSIDQIPEMSR-GKGVR 688 ++G + + I FS + M R +GV+ Sbjct: 655 QEEVIIGTKKGMAIRFSETDVRPMGRTARGVK 686 >gi|187250429|ref|YP_001874911.1| DNA gyrase subunit A [Elusimicrobium minutum Pei191] gi|186970589|gb|ACC97574.1| DNA gyrase, A subunit [Elusimicrobium minutum Pei191] Length = 840 Score = 435 bits (1119), Expect = e-119, Method: Compositional matrix adjust. Identities = 278/776 (35%), Positives = 432/776 (55%), Gaps = 64/776 (8%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 N+K+ + ++ Y+ YA+S I RA+PD+RDG KP+HRR+++ M+EMGL + +FKKS Sbjct: 14 NIKSRDIGEEMKRSYIDYAMSVIVGRALPDVRDGLKPIHRRLLYGMNEMGLKYNKSFKKS 73 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 AR+VG+V+GK HPHGD ++YDSLVRLAQ F R L+ GQGNFG++DGD AAA RYTE R Sbjct: 74 ARVVGDVMGKYHPHGDSAIYDSLVRLAQDFSLRDTLVDGQGNFGSVDGDMAAAMRYTEVR 133 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 + ++A+ +L +D++ V F D Y+ EP V P+K PNLL NG+SGIAVGMAT+IP+HN Sbjct: 134 LERIADEMLNDIDKNTVKFMDNYDGSMQEPSVLPAKMPNLLVNGSSGIAVGMATNIPTHN 193 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 + E+C+A + +I NP ++ ++L+ I GPDFPTG II R+ I + + G+G +V+AR Sbjct: 194 LSEVCDAVIEVIKNPGVTTKELMNIIKGPDFPTGAIIC-GRKGIFDYFETGKGSVKVQAR 252 Query: 256 WCVEEVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVL 313 +EE GRG IVVTEIPYQV K+ LIE IA L+ K++ + DIRDES +R+V+ Sbjct: 253 AEIEEGGRGGRSAIVVTEIPYQVNKTNLIEAIAGLVKDKKVTDIADIRDESDRRGMRLVI 312 Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373 K R D +++ ++ + ++T F +NM + GR P+++P+ ++K ++ HR+EV+ Sbjct: 313 EVK-RDGDARVVLNHLYKHTQLQTSFSVNMLAIVDGR-PRILPIKEVMKCYVKHRKEVVT 370 Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVDA 430 R+ F + +R IL+GLLIA N+D++I IIR P K ++ F+L+E Q A Sbjct: 371 ARTRFDLNKAQKREHILQGLLIAIANLDKVIKIIREAQDPTEAKFALIREFALSEPQSQA 430 Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490 IL++RL L +L I+ E LLA ++ +L ++ I E++ +K+ Sbjct: 431 ILDMRLHQLTQLSSASIEKEQKELLALIAELKGILEDPQKVLAIIVDELKGLKK------ 484 Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSA 542 D G R T + T++ +IE+E + + +SN G+ R+ + Sbjct: 485 DYGTERKTEISNTELSDMTMED-LIEEEDVVITLSNDGYAKRIPLDTYRTQNRGGKGVIG 543 Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDLN 597 KE D ++ T IL+ +T G +AY +P GN LS G+AI L+ ++ Sbjct: 544 GKTKEEDFIEHLFVTSTHATILMFTTRGRVFSLRAYEIPEGNRLS---KGKAIVNLLQIS 600 Query: 598 HNQDIVTAFVY------DSTCKLLVVSSKGNAFIVEESEIIANTRK-GKTFLKVSSEEKM 650 + + I +A +S L + ++ E AN RK G + + + + Sbjct: 601 NEEKITSAVAIEDFDPKNSGETYLTMCTRFGLIKRVELGDFANIRKSGIIAIGLEDGDVL 660 Query: 651 KLVVKVTGDHVAVVG-ENRKLLIFSIDQIPEMSRG----KGVRL----------QSYKDG 695 V G ++ + K + F +QI M R +G+RL + KD Sbjct: 661 TSVQMTHGKSDLIIATRDGKAIRFDEEQIRAMGRQAKGVRGIRLGKDDIVVGMEHALKDA 720 Query: 696 GISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751 DV+ +CE + Y R +N RGG G++ K R+GK + Sbjct: 721 PGPDVLS--VCENGYGKRTEFTEY-RKQN--------RGGSGTITIKTTERNGKVV 765 >gi|228474188|ref|ZP_04058925.1| DNA gyrase, A subunit [Staphylococcus hominis SK119] gi|314935206|ref|ZP_07842559.1| DNA gyrase, A subunit [Staphylococcus hominis subsp. hominis C80] gi|228271883|gb|EEK13220.1| DNA gyrase, A subunit [Staphylococcus hominis SK119] gi|313656541|gb|EFS20280.1| DNA gyrase, A subunit [Staphylococcus hominis subsp. hominis C80] Length = 884 Score = 435 bits (1119), Expect = e-119, Method: Compositional matrix adjust. Identities = 246/632 (38%), Positives = 384/632 (60%), Gaps = 29/632 (4%) Query: 9 SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68 +++L + + ++ + E +L YA+S I RA+PD+RDG KPVHRRI++ ++E G+ Sbjct: 2 ADSLPQSRINERNITNEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTP 61 Query: 69 GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128 +KKSARIVG+V+GK HPHGD S+YD++VR+AQ F RYPL+ GQGNFG++DGD AAA Sbjct: 62 DKPYKKSARIVGDVMGKYHPHGDSSIYDAMVRMAQTFSYRYPLVDGQGNFGSMDGDGAAA 121 Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188 RYTEA+MT++ +L+ +++D +DF D Y+ + EP V PS+FPNLL NG SGIAVGMA Sbjct: 122 MRYTEAKMTKITLELLRDINKDTIDFLDNYDGTEREPEVLPSRFPNLLVNGASGIAVGMA 181 Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248 T+IP HN+ E+ + L L NP+++I +L+E I GPDFPT G+I+ + I +Y GRG Sbjct: 182 TNIPPHNLTEVIDGVLRLSQNPDVTISELMEDIQGPDFPTSGLIL-GKSGIRRAYETGRG 240 Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-- 306 ++RAR +EE G G IVVTEIPYQV K+R+IEKIAEL KRI + D+RDE++ Sbjct: 241 SIQMRARASIEERGGGRQRIVVTEIPYQVNKARMIEKIAELAREKRIEGITDLRDETSLR 300 Query: 307 EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366 VR+V+ + + + ++++ +++ + ++T F +NM L GR P+++ L L E+L Sbjct: 301 TGVRVVIDVR-KDANANVILNNLYKHTPLQTSFGVNMIALVNGR-PKLINLKEALVEYLE 358 Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSL 423 H++ V+ RR+ + ++ R IL+GL IA +IDEII+IIR D K M + RF L Sbjct: 359 HQKTVVRRRTEYNLKKAKDRAHILEGLRIALDHIDEIISIIRESDTDKVAMETLQERFKL 418 Query: 424 TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483 +E Q AIL++RLR L LE +I++E + LL+ +++ +L + + + E+ E+K Sbjct: 419 SERQAQAILDMRLRRLTGLERDKIENEYNELLSYIAELEEILANEEVLLQLVRDELTEIK 478 Query: 484 EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV----- 538 E F G R T ++ D + +I +E I + +S+ +I+ L + Sbjct: 479 ERF------GDERRTEIQLGGLDHLE-DEDLIPEEQIVITLSHNNYIKRLPVSTYRSQNR 531 Query: 539 ---DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLL 593 + ++ E D + + T D +L + G+ Y L + LS + G + Sbjct: 532 GGRGVQGMNTLEEDFVSQLVTLSTHDNVLFFTNKGRVYKLKGYEVPELSRQSKGIPVINA 591 Query: 594 IDLNHNQDIVTAF----VYDSTCKLLVVSSKG 621 I+L +++ I T + D L+ + KG Sbjct: 592 IELENDEVISTMIAVRDLEDENSFLVFATKKG 623 >gi|323342249|ref|ZP_08082481.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Erysipelothrix rhusiopathiae ATCC 19414] gi|322463361|gb|EFY08555.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Erysipelothrix rhusiopathiae ATCC 19414] Length = 835 Score = 435 bits (1118), Expect = e-119, Method: Compositional matrix adjust. Identities = 262/719 (36%), Positives = 424/719 (58%), Gaps = 44/719 (6%) Query: 10 NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69 NT + +K ++ +++ +++YA+S I RA+PD+RDG KPVHRRI++AM+++G+ Sbjct: 4 NTQSYDKIKQRNISEEMKKSFVSYAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSD 63 Query: 70 AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129 +KKSARIVGEVIGK HPHGD +VYDS+VR+AQ F RY LI G GNFG+IDGD AAA Sbjct: 64 KPYKKSARIVGEVIGKYHPHGDTAVYDSMVRMAQEFSYRYMLIDGHGNFGSIDGDGAAAM 123 Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189 RYTEARM++++ +++ ++++ VDF D Y+ E+ EPVV PS+FPN+L NG +GIAVGMAT Sbjct: 124 RYTEARMSKISMELIRDINKNTVDFIDNYDGEEREPVVLPSRFPNVLVNGGTGIAVGMAT 183 Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLE-YIIGPDFPTGGIIVESRESIVESYRLGRG 248 +IP HN+ E+ +A +ALIDNP+I+I++L+E YI GPDFPTG +++ R I ++ GRG Sbjct: 184 NIPPHNLGEVIDATIALIDNPDITIKELMEDYIFGPDFPTGALLL-GRSGIKSAFETGRG 242 Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-E 307 +RA+ +EE+ G I+++EIPYQV K+ L+EKIA L+ K I + D+RDES E Sbjct: 243 SVVMRAKVDIEEMKNGKPRIIISEIPYQVNKATLVEKIATLVRDKEIDGITDLRDESNRE 302 Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367 +RIV+ + R + ++++ ++ L+ +++ F +NM L GR P+++ L +L + H Sbjct: 303 GIRIVVELR-REVQAEVVLNQLYRLTALQSSFGVNMLALVNGR-PELLNLLQVLSHYRDH 360 Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR----FSL 423 + E++ RR+ F ++ + R IL+GL+IA +IDE+I+IIR+ K P ++R F L Sbjct: 361 QIEIVTRRTQFELKKAEDRAHILQGLMIALDHIDEVISIIRSS-KDDPEAITRLNEAFDL 419 Query: 424 TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483 TE Q A+L+++LR L L+ ++++E + L + +L + + I E+ E+K Sbjct: 420 TEIQSKAVLDMQLRRLTGLQRDKVENEFNELTILIVDLKDILANHDRLLTIIKDELIEIK 479 Query: 484 EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD---- 539 F RR+ E+ AD L + +I E I V ++ G+I+ S + Sbjct: 480 TKFGDD-----RRS---EIVEADIDMLDEDLIPVEDIVVTMTMNGYIKRTTVDSFNTQNR 531 Query: 540 ----LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL--L 593 + + + D++ + T D +LL + GK Y + N+ S + I + L Sbjct: 532 GGKGVRGISTYDEDTVDQFIAMSTHDYLLLFTNLGKVYRIRGFNVPSSSRTSKGIPVVNL 591 Query: 594 IDLNHNQDIVTAFVY---DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM 650 ++L + + T D + V+ +G VE E + + GK + + ++++ Sbjct: 592 LNLTEGETVKTLVKVAKDDESKYAFFVTKQGIVKRVEVQEFESIRQNGKIAITLREDDEL 651 Query: 651 KLVVKVTGDHVAVV-GENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEG 708 V GD+ ++ G N K + F +++ M R S VI F + EG Sbjct: 652 VGVRMTNGDNEIIIGGSNGKAVRFDENEVRSMGRTA------------SGVIGFNVDEG 698 >gi|149182284|ref|ZP_01860763.1| DNA gyrase subunit A [Bacillus sp. SG-1] gi|148849976|gb|EDL64147.1| DNA gyrase subunit A [Bacillus sp. SG-1] Length = 839 Score = 435 bits (1118), Expect = e-119, Method: Compositional matrix adjust. Identities = 233/569 (40%), Positives = 361/569 (63%), Gaps = 20/569 (3%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 NVK +++ + +L YA+S I RA+PD+RDG KPVHRRI++AM+++G+ A+KKS Sbjct: 8 NVKEINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKAYKKS 67 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 ARIVGEVIGK HPHGD +VYD++VR+AQ F RY L+ G GNFG++DGDSAAA RYTEAR Sbjct: 68 ARIVGEVIGKYHPHGDTAVYDTMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEAR 127 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 M++++ I++ +++D +D+RD Y+ + EP+V PS+FPNLL NG+SGIAVGMAT+IP H Sbjct: 128 MSKISMEIIRDINKDTIDYRDNYDGSEREPIVMPSRFPNLLVNGSSGIAVGMATNIPPHQ 187 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 + E+ + LAL +PEI+I++L++YI GPDFPT G+IV R I +Y G+G +RA+ Sbjct: 188 LGEVIDGLLALSHDPEITIQELMDYIPGPDFPTAGMIV-GRSGIRRAYESGKGSITMRAK 246 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315 +E G I+V EIPYQV K++LIEKIA+L+ K+I + D+RDES + ++ Sbjct: 247 VRIETKANGKETIIVDEIPYQVNKAKLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIE 306 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 + + ++L+ +++ + ++T F +N+ L G+ P+V+ L L +L H++ V+ RR Sbjct: 307 VRKDANANVLLNNLYKQTALQTSFGINLLALVDGQ-PKVLNLKQCLYYYLEHQKVVIRRR 365 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAIL 432 + F ++ + R IL+GL IA +IDEIIA+IR D + ++ FSL+E Q AIL Sbjct: 366 TEFELKKAEARAHILEGLRIALDHIDEIIALIRGSQTTDIAREGLMENFSLSEKQAQAIL 425 Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492 ++RL+ L LE +I++E L+ ++ ++L ++ I E+ E+KE F+ Sbjct: 426 DMRLQRLTGLERDKIENEYQELVKLIAELKAILADEEKVLEIIREELNEIKERFNDE--- 482 Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALH 544 RRT V+ + + +I +E I + +++ G+I RS K + + Sbjct: 483 --RRTEI--VAGGIEQIEDEDLIPRENIILTLTHNGYIKRLPVSTYRSQKRGGRGIQGMG 538 Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAY 573 E D ++ L T D IL + GKA+ Sbjct: 539 TNEDDFVEHLLTTSTHDTILFFTNKGKAF 567 >gi|218901212|ref|YP_002449046.1| DNA gyrase, A subunit [Bacillus cereus AH820] gi|228930500|ref|ZP_04093500.1| DNA gyrase subunit A [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228931512|ref|ZP_04094422.1| DNA gyrase subunit A [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228988723|ref|ZP_04148808.1| DNA gyrase subunit A [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229124997|ref|ZP_04254171.1| DNA gyrase subunit A [Bacillus cereus 95/8201] gi|218539391|gb|ACK91789.1| DNA gyrase, A subunit [Bacillus cereus AH820] gi|228658498|gb|EEL14164.1| DNA gyrase subunit A [Bacillus cereus 95/8201] gi|228771035|gb|EEM19516.1| DNA gyrase subunit A [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228828155|gb|EEM73879.1| DNA gyrase subunit A [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228829219|gb|EEM74856.1| DNA gyrase subunit A [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 823 Score = 435 bits (1118), Expect = e-119, Method: Compositional matrix adjust. Identities = 254/704 (36%), Positives = 416/704 (59%), Gaps = 50/704 (7%) Query: 9 SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68 S+ + ++ +++ + +L YA+S I RA+PD+RDG KPVHRR+++AM+++G+ Sbjct: 2 SDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 61 Query: 69 GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128 A+KKSARIVGEVIGK HPHGD +VY+++VR+AQ F QRY L+ G GNFG++DGDSAAA Sbjct: 62 DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 121 Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188 RYTEARM++++ +++ + ++ +D++D Y+ + EP+V P++FPNLL NGT+GIAVGMA Sbjct: 122 MRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMA 181 Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248 T+IP H + E+ + LAL NP+I+I +L+E I GPDFPT G+I+ R I +Y GRG Sbjct: 182 TNIPPHQLGEVIDGVLALSHNPDITIAELMECIPGPDFPTAGLIL-GRSGIRRAYETGRG 240 Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308 +RA+ +EE G I+VTE+PYQV K+RLIEKIAEL+ K+I + D+RDES + Sbjct: 241 SIILRAKVEIEEKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRN 300 Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368 ++ R + ++L+ +++ + ++T F +NM L G PQV+ L L +L H+ Sbjct: 301 GMRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGE-PQVLNLKQNLYHYLEHQ 359 Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTE 425 + V+ RR+++ ++ + R IL+GL IA ++DE+I +IRN K ++ RF L+E Sbjct: 360 KVVIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRNSKTAEIAKQGLMERFGLSE 419 Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485 Q AIL++RL+ L LE +I+ E +L+ ++ ++L ++ I E+ EVKE Sbjct: 420 KQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIAELKAILADEEKVLEIIREELTEVKER 479 Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSLKSHSVD----- 539 F+ +RRT E++ +++ + +I ++ I + +++ G+I+ L + + Sbjct: 480 FND-----KRRT---EITIGGMESIEDEDLIPEQNIAITLTHNGYIKRLPASTYKTQNRG 531 Query: 540 ---LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLL 581 + + + D ++ L T D IL + GK Y +P NLL Sbjct: 532 GRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEIPEYSRTAKGIPIINLL 591 Query: 582 SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR-KGKT 640 G GE I +I + D F++ +T + + + ++F AN R G Sbjct: 592 -GVDKGEWINAIIPIREFGD--DEFLFFTTKQGISKRTPLSSF--------ANIRTNGLI 640 Query: 641 FLKVSSEEKMKLVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSR 683 + + E+++ V +GD +VG + +LI F+ + M R Sbjct: 641 AISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGR 684 >gi|294792425|ref|ZP_06757572.1| DNA gyrase, A subunit [Veillonella sp. 6_1_27] gi|294456324|gb|EFG24687.1| DNA gyrase, A subunit [Veillonella sp. 6_1_27] Length = 803 Score = 434 bits (1117), Expect = e-119, Method: Compositional matrix adjust. Identities = 274/752 (36%), Positives = 416/752 (55%), Gaps = 67/752 (8%) Query: 26 LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85 ++ Y+ YA+S I RA+PD+RDG KPVHRRI++AM E G+ +KKSARIVG+V+GK Sbjct: 1 MKNAYIDYAMSVIVMRALPDVRDGLKPVHRRILYAMHETGMTPNKPYKKSARIVGDVLGK 60 Query: 86 LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145 HPHGD SVYD+ VRLAQ F RY L+ G GNFG+IDGDSAAA RYTE RM ++ +L Sbjct: 61 YHPHGDSSVYDATVRLAQDFNTRYLLVDGHGNFGSIDGDSAAAMRYTEVRMAKITTEMLA 120 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 +D++ VDF Y+E EP V P+K PNLL NG+SGIAVGMAT+IP HN+ E+C Sbjct: 121 DIDKETVDFMPNYDESLQEPTVLPAKIPNLLINGSSGIAVGMATNIPPHNLNEVCNGLAM 180 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265 LIDNP++++++L+ I GPDFPTG +I+ RE I ++Y GRG ++RAR +EE+ +G Sbjct: 181 LIDNPDVTVDELMTAIKGPDFPTGALIL-GREGIKKAYSTGRGSVKMRARATIEEMSKGK 239 Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325 IVVTEIPYQV K+R+IE IA L K I + +RDES ++ + PD++ Sbjct: 240 HKIVVTEIPYQVNKARVIETIANLSRDKVIDGITALRDESDRQGMRIVIELRADVQPDIV 299 Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385 + ++ + ++ F + M L G P+V+ L +L +L HR +V+ RR+ F + + Sbjct: 300 LNKLYKHTQLQETFGVIMLALVDGH-PRVLNLKEVLGYYLDHRLDVIVRRTQFELNKAEA 358 Query: 386 RVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLTENQVDAILNLRLRSLRKL 442 R IL+GLLIA +IDE+IA IR+ ++ + ++ +F L+E Q AIL++RLR L L Sbjct: 359 RAHILEGLLIALDHIDEVIATIRSSQTDEIARNALMQKFGLSEKQAVAILDMRLRRLTGL 418 Query: 443 EEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEV 502 E +I+ E LLA E + ++L S +Q I E+ ++K+ + RR + Sbjct: 419 EREKIEEEYKELLALIEDLKAILASEARQRQIIKDELDDMKKKYGDP----RRSEITIDT 474 Query: 503 SRADKATLQQAMIEKEPITVVISNRGWIRSLKSH--------SVDLSALHFKEGDSLKIA 554 S D + +I E + + ++ +G+I+ + ++ + + KE D + Sbjct: 475 SDLD----VEDLIADEEMVITLTKQGYIKRMNANVYRNQHKGGAGVIGMKTKEDDYVTQI 530 Query: 555 LHAHTTDRILLLSTDGKAYTL-----PAGNLLSGRGH----------GEAIQLLIDLNHN 599 +H T + +L ++ G+AY L P + RG GE++ +IDL Sbjct: 531 MHVRTHNTLLFFTSTGRAYRLKAYEVPEAGSRNSRGTAMVNVLPLAVGESVTTMIDLERV 590 Query: 600 QDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD 659 + V F+ + VV +EE I R G + + +++ V TG+ Sbjct: 591 HEDVNLFM---VTEFGVVKRTA----IEEYRNI--RRSGLNAINLDEGDRLISVNVTTGN 641 Query: 660 HVAVVGENRKLLI-FSIDQIPEMSRG----KGVRLQSYKDGGISDVICFKICEGLTWID- 713 ++G + I FS + M R +G++L + DV+ + G+ D Sbjct: 642 QDILIGTKLGIAIRFSEHDVRLMKRAAHGVRGIKLNA------GDVV---VGAGVLNTDE 692 Query: 714 SAGRSYNRSE------NDLLGW-LGKRGGVGS 738 S + + SE ND + L KRGG GS Sbjct: 693 SEAQVFTISEEGFGKRNDAEAYTLQKRGGKGS 724 >gi|299541760|ref|ZP_07052083.1| DNA gyrase subunit A [Lysinibacillus fusiformis ZC1] gi|298725498|gb|EFI66139.1| DNA gyrase subunit A [Lysinibacillus fusiformis ZC1] Length = 821 Score = 434 bits (1117), Expect = e-119, Method: Compositional matrix adjust. Identities = 271/750 (36%), Positives = 431/750 (57%), Gaps = 50/750 (6%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 VK +++ +E +L YA+S I RA+PD+RDG KPVHRRI++ M E+G A+KKSA Sbjct: 9 VKGINITEEIETSFLDYAMSVIVSRALPDVRDGLKPVHRRILYGMQELGNTADKAYKKSA 68 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 RIVG+V+GK HPHGD S+YD++VR+AQ F RY L+ G GNFG++DGD AAA RYTE+RM Sbjct: 69 RIVGDVMGKYHPHGDSSIYDAMVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAMRYTESRM 128 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 +++A +L+ +++D +D+ D Y+ + EP+V PS++PNLL NG +GIAVGMAT+IP H + Sbjct: 129 SKIAMEMLRDINKDTIDYTDNYDGSEKEPIVLPSRYPNLLVNGAAGIAVGMATNIPPHQL 188 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E +A +AL +NP I+ E+L+E I GPDFPTGG+I+ R I +Y GRG +RA+ Sbjct: 189 GETIDAVIALSENPAITTEELMEIIPGPDFPTGGLIL-GRSGIRRAYETGRGSIIIRAKV 247 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316 +E+ G I++ E+PYQV K++LIEKIAEL+ K+I + ++RDES V+ Sbjct: 248 EIEQKANGKETILIHELPYQVNKAKLIEKIAELVRDKKIDGITNLRDESDRRGMRVVIEV 307 Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376 + + ++++ +++ + M++ F +NM L G+ P+V+ L +L +L H++ ++ RR+ Sbjct: 308 RKDANANVVLNNLYKQTAMQSSFGINMLSLVNGQ-PKVLGLKEMLYHYLEHQKVIIRRRT 366 Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAILN 433 F ++ + R IL+GL IA +IDEIIAIIR ++ KP ++ RFSL+E Q AIL+ Sbjct: 367 EFDLRKAEDRAHILEGLRIALDHIDEIIAIIRGSRSGEEAKPQLMERFSLSERQAQAILD 426 Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493 +RL L LE +I++E L +++ ++L ++ + I EI E+KE F+ + Sbjct: 427 MRLVRLSGLEREKIEAEYQELQVLIDELKAILADEEKIVDIIRTEILELKERFNDT---- 482 Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DLSALHF 545 RRT S + + +I E V +++ G+I+ L +++ + + Sbjct: 483 -RRTEIT--SGGIEMIEDEDLIPVENSVVTLTHNGYIKRLAANTYRSQKRGGRGVQGMGT 539 Query: 546 KEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQ 600 E D ++ ++ T D IL ++ G K Y +P G I L+++ + Sbjct: 540 NEDDFVEHLMNTSTHDTILFFTSKGKVFRAKGYEIPE---FGRTAKGLPIVNLLNIEKGE 596 Query: 601 DIVTAFV----YDSTCKLLVVSSKGNAFIVEESEI--IANTRKGKTFLKVSSEEKMKLV- 653 VTA + +D + + G I + + + AN R + +S E L+ Sbjct: 597 K-VTAMIRVASFDDDAYFIFTTKTG---ITKRTPVSQFANIRT-NGLIAISLREDDDLIS 651 Query: 654 VKVT-GDHVAVVGENRKLLI-FSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEG-- 708 V++T G+ ++G +L+ F D I M R GVR +DG +V+ +I E Sbjct: 652 VRLTDGEKQVIIGTRDGMLVRFQEDDIRSMGRTAGGVRGIKLRDG--DEVVGMEIVEPGQ 709 Query: 709 -LTWIDSAGRSYNRSENDLLGWLGKRGGVG 737 + + G SE D L RGGVG Sbjct: 710 EILVVTEKGYGKRTSEEDY--RLQSRGGVG 737 >gi|171920662|ref|ZP_02931894.1| DNA gyrase, A subunit [Ureaplasma urealyticum serovar 13 str. ATCC 33698] gi|209554572|ref|YP_002284501.1| DNA gyrase subunit A [Ureaplasma urealyticum serovar 10 str. ATCC 33699] gi|225550915|ref|ZP_03771864.1| DNA gyrase, A subunit [Ureaplasma urealyticum serovar 2 str. ATCC 27814] gi|171903395|gb|EDT49684.1| DNA gyrase, A subunit [Ureaplasma urealyticum serovar 13 str. ATCC 33698] gi|209542073|gb|ACI60302.1| DNA gyrase, A subunit [Ureaplasma urealyticum serovar 10 str. ATCC 33699] gi|225380069|gb|EEH02431.1| DNA gyrase, A subunit [Ureaplasma urealyticum serovar 2 str. ATCC 27814] Length = 844 Score = 434 bits (1117), Expect = e-119, Method: Compositional matrix adjust. Identities = 266/698 (38%), Positives = 406/698 (58%), Gaps = 37/698 (5%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 +K S+ +E +L Y++S I RA+PD+RDGFKPVHRR + A E G+ +KKSA Sbjct: 25 IKEQSITKEVETSFLDYSMSVIVARALPDVRDGFKPVHRRALFAAFENGMTHDKPYKKSA 84 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R VG+VIGK HPHGDQ+VY ++VR+AQ F RY L+ G GNFG+IDGDSAAA RYTEAR+ Sbjct: 85 RWVGDVIGKYHPHGDQAVYQTIVRMAQEFSMRYLLVDGHGNFGSIDGDSAAAMRYTEARL 144 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 ++++ +L+ +D++ VDF Y+ + EP V PS FPNLL NGT+GIAVGMAT+IP HN+ Sbjct: 145 SKISYELLKYIDKETVDFVPNYDASEQEPSVLPSGFPNLLTNGTTGIAVGMATNIPPHNL 204 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+C+A A N +ISI +++E++ GPDFPTG I I+ + GRG +R+++ Sbjct: 205 TEVCQAIKAYAKNHDISIPEIMEHLKGPDFPTGAEIY-GDSGIINYFNTGRGSVTIRSKY 263 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFP 315 +E++G+G IVVTEIPY V K LIEKI EL+ K+I + D+RDES+ D +RIV+ Sbjct: 264 EIEDIGQGRVAIVVTEIPYMVNKVNLIEKIVELVTNKQIEGISDLRDESSRDGIRIVIEV 323 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 K R + P++L+ +F + ++T F +N N+ + VP V+ + ++K + H+ EVL RR Sbjct: 324 K-RDVIPEVLLNKLFKTTALQTNFSVN-NLALVNGVPMVLNIKEMIKYYFEHQIEVLVRR 381 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432 + F ++ R+ I++GL+IA NIDE+I II+ ++D +++RF LTE Q AIL Sbjct: 382 TKFDLRKAKERIHIVEGLVIAVNNIDEVIKIIKASGDDDIASKALIARFGLTELQTKAIL 441 Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492 +RLR+L L ++K E ++LL E ++ +L + +Q N I CE + + K D Sbjct: 442 EMRLRALTGLNIDKLKKEYEDLLLIIEDLEDILENYDRQVN-IICE--NLDYLIEKFGDE 498 Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSVDLSALH 544 R + S D + +I E I V +S RG+ + L + V + L Sbjct: 499 RRTEIMYGVSSHID----DEDLIPVEDIVVTMSKRGYFKRLPIDTYKNQRRGGVGVQGLK 554 Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDI 602 E D ++ L A+T +L S G+ Y L + G + I + + + ++ I Sbjct: 555 TYEDDDVEKILVANTHTDLLFFSDLGRVYRLRGHEVPLGSRQSKGIPAINFLPIEKSESI 614 Query: 603 VTAFVYDS--TCKLLVVSSKG---NAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657 +T D+ L +SKG A + + I AN GK + + +K+ V++ Sbjct: 615 LTILPIDNYEQGSLFFTTSKGIIKRANLSDFESIRAN---GKIAITLKEGDKLFSVMQTL 671 Query: 658 G-DHVAVVGENRKLLIFSIDQIPEMSR----GKGVRLQ 690 G D V + N ++ F+ + EM R KG+ L+ Sbjct: 672 GNDEVFIGASNGNVIRFNENDAREMGRIATGVKGINLE 709 >gi|163846815|ref|YP_001634859.1| DNA gyrase subunit A [Chloroflexus aurantiacus J-10-fl] gi|222524636|ref|YP_002569107.1| DNA gyrase subunit A [Chloroflexus sp. Y-400-fl] gi|163668104|gb|ABY34470.1| DNA gyrase, A subunit [Chloroflexus aurantiacus J-10-fl] gi|222448515|gb|ACM52781.1| DNA gyrase, A subunit [Chloroflexus sp. Y-400-fl] Length = 822 Score = 434 bits (1117), Expect = e-119, Method: Compositional matrix adjust. Identities = 238/579 (41%), Positives = 361/579 (62%), Gaps = 32/579 (5%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 V+ V++ + YL+YA+S I RA+PD RDG KPV RRI++ M +MG +KKSA Sbjct: 6 VRPVNITNEMRTAYLSYAMSVIVSRALPDARDGLKPVQRRILYGMWDMGFRSNQPYKKSA 65 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 RIVG+V+GK+HPHGD +VYD+L R+AQP+ RYPLI GQGNFG+IDGD AA RYTEAR+ Sbjct: 66 RIVGDVLGKMHPHGDSAVYDALARMAQPWSMRYPLIDGQGNFGSIDGDPPAAMRYTEARL 125 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 +AE +L +++D VDFRD ++ EPVV P+ PNLL NG SGIAVGMAT+IP HN+ Sbjct: 126 APIAEELLSEIEKDTVDFRDNFDGSYREPVVLPAILPNLLLNGASGIAVGMATNIPPHNL 185 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+C+A LI++PE ++E+L++ I GPDFPT G+I+ + E I+ +Y GRG +RA+ Sbjct: 186 GELCDAISYLIEHPEATVEELMKIIPGPDFPTAGLILGT-EGILAAYSTGRGQITLRAKT 244 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFP 315 +EE GRG++ IVVTE+PYQV K+RL E+IAEL+ ++I + D+RDES +R+V+ Sbjct: 245 HIEEAGRGAFMIVVTELPYQVNKARLQERIAELVKDRKIEGIRDVRDESDRTGMRLVILL 304 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVL-SMGRVPQVMPLDGILKEWLAHRREVLFR 374 K + P ++ +++ + M+T F +NM L GR P+V+ L +L+E++ HR+EV+ R Sbjct: 305 KQDA-QPKKVLNALYKHTQMQTTFGINMLALVEHGRQPRVLTLKRLLQEYITHRQEVIRR 363 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAI 431 R+ F + R IL+GL IA N+D +I IR+ + + ++S FSLTE Q AI Sbjct: 364 RTEFDLARARERAHILEGLKIALDNLDAVIQTIRDSRTAESARNNLMSNFSLTERQAQAI 423 Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491 L+L+LR L LE +I+ E ++ +++ +L + ++ + I ++ +KE + Sbjct: 424 LDLQLRRLAALERKKIEDEYREVIKLIAELEDILANPRKVLHLIQQDLTRLKEKYGDP-- 481 Query: 492 LGRRRTTFC-----EVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSV 538 RRT EVS D +I + + +++RG+I R+ + Sbjct: 482 ---RRTRIIPDVTGEVSDED-------LIPDVRVMITLTDRGYIKRQLPDAYRTQRRGGR 531 Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPA 577 + + +E D ++ L ++ D +L + GK Y L A Sbjct: 532 GIKGMLTREQDIVRHLLTCNSLDNLLFFTDRGKVYQLKA 570 >gi|320159763|ref|YP_004172987.1| DNA gyrase subunit A [Anaerolinea thermophila UNI-1] gi|319993616|dbj|BAJ62387.1| DNA gyrase subunit A [Anaerolinea thermophila UNI-1] Length = 814 Score = 434 bits (1117), Expect = e-119, Method: Compositional matrix adjust. Identities = 278/762 (36%), Positives = 420/762 (55%), Gaps = 40/762 (5%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 +++V + + YL YA+S I RA+PD RDG KPVHRRI++AM +MG+ +A+KKS Sbjct: 5 TIQSVDIDEQMRTAYLDYAMSVIVARALPDARDGLKPVHRRILYAMEDMGIRANSAYKKS 64 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 ARIVGEV+GK HPHGD +VYD++ R+AQ F RYPLI GQGNFG+IDGD+ AA RYTEAR Sbjct: 65 ARIVGEVLGKYHPHGDMAVYDAMARMAQDFSMRYPLIDGQGNFGSIDGDAPAAMRYTEAR 124 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 + +AE +L +D+D VDF D ++ EPVV P++ PNLL NG+SGIAVGMATSIP HN Sbjct: 125 LNPMAEELLADIDKDTVDFTDNFDGTLKEPVVLPARLPNLLLNGSSGIAVGMATSIPPHN 184 Query: 196 VQEICEAALALIDN----PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251 ++E+ +A LI+N +I+ E L+ I GPDFPTGGIIV RE I+ Y GR Sbjct: 185 LREVAQAVDYLIENYDQMDDITAEDLMRIIPGPDFPTGGIIV-GREGILHGYSTGRSRLT 243 Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311 VR +EE G + I++TEIPYQV K+ LIE+IAEL+ ++ + D+RDES Sbjct: 244 VRGVARIEEQKGGRYNIIITEIPYQVNKAGLIERIAELVREGKLDEISDLRDESDRHGMS 303 Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371 ++ R P ++ ++ + +++ F +NM L + P+++PL L+ ++ HR+EV Sbjct: 304 IVIELRRGAQPRQVLNQLYKYTPLQSTFSVNMLAL-VDNEPRLLPLKRALQVFIQHRQEV 362 Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQV 428 L RR+ F + R IL+GLLIA N+D +IAIIR + + + ++ RF LTE Q Sbjct: 363 LTRRTRFELDKARARAHILEGLLIALANLDAVIAIIRQSPDAETARQRLIERFKLTEVQA 422 Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488 AIL+++LR L LE +I+ E + ++ LL + ++ I +++E+ E + Sbjct: 423 QAILDMQLRRLAALERQKIEDEYREVTERIAYLEDLLANPRKILALIQTDMKELAEKYGD 482 Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS------- 541 + RRT ++ D + ++ ++ E + + ++ RG+I+ + + + Sbjct: 483 N-----RRTRIAAEAKEDFS--EEDLVADEAVLITLTARGYIKRVNASAYRTQNRGGKGV 535 Query: 542 -ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGRGHG--EAIQLLIDLN 597 KE D + L A T D +L + GK Y A + +GR AI +L L Sbjct: 536 IGQEVKEEDEITTILAARTLDTLLFFTDRGKVYAQKAHQIPEAGRTDKGIPAINVLA-LE 594 Query: 598 HNQDIVTAFVYDSTCK---LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654 N+ I A S L+ + G V+ SE + G + + + +++ V Sbjct: 595 ANERITVAVAVRSFADARYCLMATVNGKVKRVDLSEFESVRPSGLIAISLENGDQLGWVR 654 Query: 655 KVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE---GL 709 G HV +V E + F+ ++ M R GV S ++G V I E GL Sbjct: 655 LTDGSRHVLLVTEQGYTVRFAESEVRSMGRQASGVTGISLREG--DRVASMDIVEEGGGL 712 Query: 710 TWIDSAGRSYNRSENDLLGWLGKR-GGVGSLVPKGFPRSGKF 750 + + G R D G+ GGV +L K ++GK Sbjct: 713 LLVTTKGFG-KRVRLDEFVLKGRAIGGVMALDHKAIAKTGKL 753 >gi|315644306|ref|ZP_07897476.1| DNA gyrase, A subunit [Paenibacillus vortex V453] gi|315280681|gb|EFU43970.1| DNA gyrase, A subunit [Paenibacillus vortex V453] Length = 832 Score = 434 bits (1117), Expect = e-119, Method: Compositional matrix adjust. Identities = 263/705 (37%), Positives = 416/705 (59%), Gaps = 41/705 (5%) Query: 12 LVEENVKAVSLR---FALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68 + EEN + R + E ++ YA+S I RA+PD+RDG KPVHRRI++AMSE+G+ Sbjct: 1 MAEENFSQIKDRDIGTEMRESFMDYAMSIIVSRALPDVRDGMKPVHRRILYAMSELGMAP 60 Query: 69 GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128 KKSARIVGEVIGK HPHGD +VY+S+VR+AQ F RY L+ G GNFG+IDGD AAA Sbjct: 61 DKPHKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFSMRYMLVDGHGNFGSIDGDMAAA 120 Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188 RYTEAR++++A +L+ ++++ +DF Y+ E+ EPVV P+++PNLL NG SGIAVGMA Sbjct: 121 MRYTEARLSKIAMEMLRDINKETIDFAPNYDGEEHEPVVLPARYPNLLVNGVSGIAVGMA 180 Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248 T+IP HN+ E+ + A+I NP+I+ +L+EYI GPDFPT G I+ RE I ++YR GRG Sbjct: 181 TNIPPHNLGEVIDGVQAMIRNPDITPMELMEYIQGPDFPTAGFIL-GREGIRQAYRTGRG 239 Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308 +RA+ +EE IVV EIPYQV K+RL+EKIAEL+ KRI + D+RDES + Sbjct: 240 SVTMRAKATIEE-NNNKARIVVHEIPYQVNKARLVEKIAELVRDKRIDGITDLRDESDRN 298 Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368 ++ R ++P++++ +++ + M++ F +NM + + P+++ L +L +L H+ Sbjct: 299 GMRIVIELRRDVNPNVVLNNLYKHTAMQSNFGINMLAI-VNNEPKILNLRDVLFYYLEHQ 357 Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTE 425 V+ RR+ F ++ + R IL+GL IA ++DE+IA+IR + + ++ RF L++ Sbjct: 358 VIVIRRRTEFELRKAEARAHILEGLRIALDHLDEVIALIRASQTTEAAREGLIERFGLSQ 417 Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485 Q AIL++RL+ L LE +I++E LLA+ ++ +L + I E++E+KE Sbjct: 418 EQAQAILDMRLQRLTGLEREKIENEYQELLAKIAELREILANEHLVLQIINDELQEIKER 477 Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------- 538 FS RRT E++ + + L + +I +E + + I++ G+I+ L +++ Sbjct: 478 FSDE-----RRT---EITVGEDSILDEDLIPREEVIITITHTGYIKRLPANTYRSQKRGG 529 Query: 539 -DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLID 595 + + K D ++ ++ ++ + GKAY L A + LS G I LI Sbjct: 530 RGVVGMDTKSEDFVEHLFVTNSHHYLMFFTDKGKAYRLKAYEIPELSRTARGTPIINLIQ 589 Query: 596 LNHNQDI---VTAFVYDSTCKLLVVSSKGNAFIVEES--EIIANTRKGKTFLKVSSEEKM 650 + + I + +DS L + +G +V+++ E N RKG E+ Sbjct: 590 IEQGESINAVIPVENFDSDNFLFFATRQG---VVKKTPLEDYVNIRKGGLIAINLREDDS 646 Query: 651 KLVVKVT-GDHVAVVGENRKLLI-FSIDQIPEMSRG----KGVRL 689 + VK+T G ++G + + I F + M R KG+ L Sbjct: 647 LIEVKLTDGQQEIIIGTAQGMSIRFKESDVRSMGRSATGVKGITL 691 >gi|39995115|ref|NP_951066.1| DNA gyrase subunit A [Geobacter sulfurreducens PCA] gi|39981877|gb|AAR33339.1| DNA gyrase, A subunit [Geobacter sulfurreducens PCA] gi|298504145|gb|ADI82868.1| DNA gyrase, A subunit [Geobacter sulfurreducens KN400] Length = 857 Score = 434 bits (1117), Expect = e-119, Method: Compositional matrix adjust. Identities = 290/787 (36%), Positives = 430/787 (54%), Gaps = 72/787 (9%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 N AV++ ++ Y+ YA+S I RA+PD+RDG KPVHRR ++AM +MG D+ +KKS Sbjct: 7 NKTAVNIEDEMKRSYMDYAMSVIIGRALPDVRDGLKPVHRRCLYAMYDMGNDYNKPYKKS 66 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 AR+VG+VIGK HPHGD + YD++VR+AQ F RYPL+ GQGNFG++DGDS AA RYTE R Sbjct: 67 ARVVGDVIGKYHPHGDAAAYDTIVRMAQDFSLRYPLVDGQGNFGSVDGDSPAAMRYTEIR 126 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 M Q+A +L ++++ VD Y+ +EP+V PSKFPNLL NG+SGIAVGMAT+IP HN Sbjct: 127 MEQLAHELLNDLEKETVDLGPNYDGSLTEPLVLPSKFPNLLVNGSSGIAVGMATNIPPHN 186 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 + E+ +A I+NP IS E+LL I GPDFPTGG I RE I++ YR GRG ++RAR Sbjct: 187 LTEVINGIIATIENPNISFEELLALIPGPDFPTGGFIY-GREGILQGYRTGRGIVQMRAR 245 Query: 256 WCVEEVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314 +E + I+VTEIPYQV K+ LI KIAEL+ K++ + DIRDES D ++ Sbjct: 246 ASIETHKKTERQSIIVTEIPYQVNKANLITKIAELVREKKLEGISDIRDESDRDGMRIVI 305 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 R +P +++ ++ + M+T F +NM + GR P+V+ L + ++ HRRE++ R Sbjct: 306 DLKRDENPQVILNHLYKQTQMQTSFGINMLAIVAGR-PRVLTLRDAIGHFIDHRREIVTR 364 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK-------------------- 414 R+ F ++ + R IL+G IA +D +I +IR P Sbjct: 365 RTIFDLKKAEARAHILEGYKIALDWLDAVIELIRGSKTPAEAKEGLMSGLFSDEEWLRKM 424 Query: 415 ----PVMVSRFS----LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466 P + S++ LTE Q ILNLRL L LE +I E D++L ++ +L Sbjct: 425 GLPLPAIHSQYQKPVRLTEVQAQEILNLRLHRLTGLERDKILQEYDDILKYIARLKEILA 484 Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526 S + I E+RE+KE F RRT V R+ + +L+ ++E E + V +S+ Sbjct: 485 SEAEILKIIVGELRELKEKFGDE-----RRTEI--VDRSAEISLEDTIVE-EDVVVTVSH 536 Query: 527 RGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAG 578 G+I RS + + + KE D ++ A + D +L + GK Y + Sbjct: 537 TGYIKRTAVSQYRSQRRGGKGKTGMKTKEEDFVEHLFVASSKDFMLFFTDAGKVYQIKVY 596 Query: 579 NLLSG--RGHGEAIQLLIDLNHNQDIVTAFV----YDSTCKLLVVSSKGNAFIVEESEI- 631 + G G+AI L++L N+ I TA + +D +++ + G +V++S + Sbjct: 597 EIPEGGRATRGKAIVNLLNLQENEQI-TAILSVKGFDDDRNIIMATRLG---VVKKSPLR 652 Query: 632 -IANTRKGKTFLKVSSEEKMKLVVKVTGD---HVAVVGENRKLLIFSIDQIPEMSR-GKG 686 AN R G + V+ ++ KL+ D V + +N K + F D M R +G Sbjct: 653 EYANIRSG-GIIAVNLDDGDKLIAVALTDGRQDVLLASKNGKSIRFHEDDARPMGRVSRG 711 Query: 687 VRLQSYKDGGISDVICFKI----CEGLTWIDSAGRSY-NRSENDLLGWLGKRGGVGSLVP 741 VR S +D + VI +I G T + R+E D + RGG G + Sbjct: 712 VRGMSLEDDDV--VIGMEIINPNATGSTIFTVTENGFGKRTELDEY-RVQSRGGKGIITI 768 Query: 742 KGFPRSG 748 K R+G Sbjct: 769 KTTERNG 775 >gi|134302521|ref|YP_001122491.1| DNA topoisomerase IV subunit A [Francisella tularensis subsp. tularensis WY96-3418] gi|134050298|gb|ABO47369.1| DNA topoisomerase IV, A subunit [Francisella tularensis subsp. tularensis WY96-3418] Length = 741 Score = 434 bits (1116), Expect = e-119, Method: Compositional matrix adjust. Identities = 261/731 (35%), Positives = 416/731 (56%), Gaps = 24/731 (3%) Query: 27 EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86 E+ YL Y++ I +RA+P + DG KPV RRII+AMSE+GL + +KKSAR VG+V+GK Sbjct: 18 EQAYLNYSMYVILDRALPHISDGLKPVQRRIIYAMSEIGLSHLSKYKKSARTVGDVLGKY 77 Query: 87 HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQVAELILQ 145 HPHGD + Y+++V +AQ F RYP I GQGN+G+ID S AA RYTE+R+++ A L+L Sbjct: 78 HPHGDSACYEAMVLMAQDFSYRYPFIDGQGNWGSIDDPKSFAAMRYTESRLSKYAVLLLD 137 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 + + VD+ ++ EP + P++ PN+L NG GIAVGM+T IP HN+ EI A L Sbjct: 138 ELKKGTVDWAKNFDGTMDEPKLLPAQVPNILLNGAMGIAVGMSTYIPPHNITEIINACLQ 197 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265 L+ P +IE++LE + PD+P G I+ S+E I + Y+ G G R +A + + G Sbjct: 198 LLSKPNSTIEEILEIVEAPDYPGGANIIGSKEEIADVYKSGNGSIRQQAVYEYDNHGN-- 255 Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES--AEDVRIVLFPKNRSLDPD 323 +V+T++P+QV + ++E+IA + ++I +++I+DES E V+IVL+ + Sbjct: 256 --VVITKLPHQVSSAAVMEQIANELKQQKITWIKNIQDESDDKEPVKIVLYSATIKKNIK 313 Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383 +M + +D+E F +NMN++ + PQV L IL EWL +R+ L RR + + Sbjct: 314 KIMGHLLATTDLEKSFRVNMNMIGLDNRPQVKNLLDILNEWLEYRKHTLRRRLQTSLDKV 373 Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLE 443 R+ IL+GLLIA+LNIDE+I IIRN D + +RF+L+E Q +AILN+RLR L K+E Sbjct: 374 LDRLHILEGLLIAFLNIDEVIDIIRNYDDSSGELQTRFTLSEIQAEAILNIRLRKLAKIE 433 Query: 444 EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVS 503 E +IK E L E+E ++ LNS + N + E +++ TD G R + V+ Sbjct: 434 EIEIKKEQKELQKERELLEGYLNSEVKFRNLMKKEFKQI------LTDFGDSRRSKIIVA 487 Query: 504 RADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRI 563 +A ++ ++ E +T+++S GWIR K ++D + L +K D + ++ ++ Sbjct: 488 EKAQALEEKDLMPSEKVTIILSKAGWIRCAKGENIDPAGLSYKPEDKPFLVTTGNSNIKL 547 Query: 564 LLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNA 623 + S GKAY++ L S RG+GE I I L+ I++ ++ L+ S G A Sbjct: 548 VFFSKLGKAYSMYIDKLPSARGYGEHITTYIPLDKQDQIISMAFVNAARYFLIASESGKA 607 Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR 683 F++ ++I N GK +++ K + + V + +I + + Sbjct: 608 FVIPAEDLITNKVTGKNIF--DADDVFKFIPYDKDLKMLAVSSQGRAIIRDFASFALLKK 665 Query: 684 GKG---VRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNR--SENDLLGWLGKRGGVGS 738 GKG +RL K + + F+ + LT +AG+ + R S+N + K G G Sbjct: 666 GKGKSIIRLD--KKDKLKFIELFRANQELTL--NAGKRFIRIDSKNIETYYSDKPSGGGV 721 Query: 739 LVPKGFPRSGK 749 L+P+GF + K Sbjct: 722 LLPQGFRKITK 732 >gi|257881317|ref|ZP_05660970.1| DNA gyrase subunit A [Enterococcus faecium 1,231,502] gi|257893109|ref|ZP_05672762.1| DNA gyrase subunit A [Enterococcus faecium 1,231,408] gi|294623764|ref|ZP_06702592.1| DNA gyrase, A subunit [Enterococcus faecium U0317] gi|257816975|gb|EEV44303.1| DNA gyrase subunit A [Enterococcus faecium 1,231,502] gi|257829488|gb|EEV56095.1| DNA gyrase subunit A [Enterococcus faecium 1,231,408] gi|291596718|gb|EFF27941.1| DNA gyrase, A subunit [Enterococcus faecium U0317] Length = 823 Score = 434 bits (1116), Expect = e-119, Method: Compositional matrix adjust. Identities = 231/573 (40%), Positives = 365/573 (63%), Gaps = 22/573 (3%) Query: 13 VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72 + EN+ V+L +++ ++ YA+S I RA+PD+RDG KPVHRRI++ M+E+G+ A Sbjct: 5 IRENIHDVNLTSEMKDSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKAH 64 Query: 73 KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132 KKSARIVG+V+GK HPHGD+++Y+S+VR+AQPF RY L+ G GNFG++DGD AAA RYT Sbjct: 65 KKSARIVGDVMGKYHPHGDRAIYESMVRMAQPFSYRYMLVDGHGNFGSVDGDGAAAMRYT 124 Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192 EARM+++A +L+ ++++ VDF+ Y++ + EPVV P++FPNLL NGT+GIAVGMAT+IP Sbjct: 125 EARMSKIATEMLRDINKNTVDFQSNYDDTEKEPVVLPARFPNLLVNGTTGIAVGMATNIP 184 Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252 HN+ E+ A L+DNP+++ +L+E + GPDFPTGG+++ + I +Y G+G V Sbjct: 185 PHNLSEVVAAIDLLMDNPDVTTNELMEVLPGPDFPTGGLVM-GKSGIRRAYETGKGSITV 243 Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRI 311 RA+ + E+ G I+VTE+PY V K++LIE+I+EL KRI + D+RDES+ E +RI Sbjct: 244 RAKVEITEMPNGKERIIVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMRI 303 Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371 V+ + R +++ +++ L+ ++ F NM + G VP+V+ L IL+ ++ H+REV Sbjct: 304 VIDIR-RDASASVILNNLYKLTSLQNSFGFNMLAIEKG-VPKVLSLKQILENYIEHQREV 361 Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQV 428 + RR+ F + + R IL+GL IA +IDEIIAIIR ++D+ K M+ RF L++ Q Sbjct: 362 ITRRTVFEKEKAEARAHILEGLRIALDHIDEIIAIIRGSKSDDEAKATMIERFDLSDRQS 421 Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488 AIL++RLR L LE +I++E LL E + +L ++ I E+ ++ + F Sbjct: 422 QAILDMRLRRLTGLEREKIENEYQELLKLIEDLTDILARPERVTEIIKNELADLNQRF-- 479 Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DL 540 G +R T V + + E+E + + ++N G+I+ L ++ + Sbjct: 480 ----GDKRRTELLVGEVLSLEDEDLIEEEEIV-ITLTNNGYIKRLANNEFRAQRRGGRGV 534 Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573 + D +K + T D +L + +GK Y Sbjct: 535 QGMGIHNDDFVKNLVSCSTHDTLLFFTNNGKVY 567 >gi|121533296|ref|ZP_01665124.1| DNA gyrase, A subunit [Thermosinus carboxydivorans Nor1] gi|121307855|gb|EAX48769.1| DNA gyrase, A subunit [Thermosinus carboxydivorans Nor1] Length = 625 Score = 434 bits (1116), Expect = e-119, Method: Compositional matrix adjust. Identities = 240/599 (40%), Positives = 371/599 (61%), Gaps = 23/599 (3%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 V V + ++ Y+ YA+S I RA+PD+RDG KPVHRRI++AM E G+ +KKSA Sbjct: 8 VLPVRIEEEMKNSYIDYAMSVIVMRALPDVRDGLKPVHRRILYAMHEAGMTPNKPYKKSA 67 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 RIVGEV+GK HPHGD SVYD++VR+AQ F RYPLI G GNFG++DGD+AAA RYTE RM Sbjct: 68 RIVGEVLGKYHPHGDSSVYDAIVRMAQDFSTRYPLIDGHGNFGSVDGDAAAAMRYTEVRM 127 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 +++AE +L +D+D VDF Y+E EP V P+K PNLL NG++GIAVGMAT+IP HN+ Sbjct: 128 SRIAEEMLADIDKDTVDFVPNYDESLKEPTVLPAKIPNLLVNGSAGIAVGMATNIPPHNL 187 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ +A + +IDNPE+S+++L+ I GPDFPTGG+I+ R+ I ++Y GRG ++RA+ Sbjct: 188 GEVVDALVMMIDNPEVSVKELMMAIKGPDFPTGGLIL-GRDGIKQAYTTGRGVIKMRAQA 246 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316 VE++ G IVVTEIPYQV K++L+E IA L+ K I + D+RDES V+ Sbjct: 247 RVEKMSSGKHRIVVTEIPYQVNKAKLVETIANLVRDKTIDGITDLRDESDRTGMRVVIEL 306 Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376 R ++ D+++ ++ + ++ F + M L GR P+++ L +L +L H+++V+ RR+ Sbjct: 307 RRDVNADVILNQLYKHTQLQETFGVIMLALVDGR-PRILNLRDMLHYYLEHQKDVIIRRT 365 Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVDAILN 433 F ++ R IL+GL IA ++DE+I IR P + ++++F+L+E Q AIL+ Sbjct: 366 KFELEKARARAHILEGLKIALDHLDEVITTIRQSRTPEIARDALIAKFALSEKQAQAILD 425 Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493 +RL+ L LE +I+ E ++L E ++++L ++ I E+ +VK+ F + Sbjct: 426 MRLQRLTGLEREKIEEEYKDVLETIEWLEAVLADERKVMGIIKDELLDVKKRFGDA---- 481 Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHF 545 RR +VS+ + + +I E I + I+++G++ RS + ++ + Sbjct: 482 RRTVITSDVSKLE----VEDLIANEDIVITITHQGYVKRLPVDTYRSQRRGGRGVTGMGT 537 Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEAIQLLIDLNHNQDI 602 KE D ++ A T IL + G+ Y L L +GR G AI L+ + ++ I Sbjct: 538 KEEDFVEHLFVATTHHNILFFTNKGRVYRLKGYELPDAGRTAKGSAIINLLPMEKDEKI 596 >gi|69246711|ref|ZP_00604079.1| DNA gyrase, subunit A [Enterococcus faecium DO] gi|258615265|ref|ZP_05713035.1| DNA gyrase, A subunit [Enterococcus faecium DO] gi|293563256|ref|ZP_06677708.1| DNA gyrase, A subunit [Enterococcus faecium E1162] gi|293569154|ref|ZP_06680460.1| DNA gyrase, A subunit [Enterococcus faecium E1071] gi|68195125|gb|EAN09584.1| DNA gyrase, subunit A [Enterococcus faecium DO] gi|291588123|gb|EFF19965.1| DNA gyrase, A subunit [Enterococcus faecium E1071] gi|291604795|gb|EFF34277.1| DNA gyrase, A subunit [Enterococcus faecium E1162] Length = 823 Score = 434 bits (1115), Expect = e-119, Method: Compositional matrix adjust. Identities = 231/573 (40%), Positives = 364/573 (63%), Gaps = 22/573 (3%) Query: 13 VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72 + EN+ V+L +++ ++ YA+S I RA+PD+RDG KPVHRRI++ M+E+G+ A Sbjct: 5 IRENIHDVNLTSEMKDSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKAH 64 Query: 73 KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132 KKSARIVG+V+GK HPHGD ++Y+S+VR+AQPF RY L+ G GNFG++DGD AAA RYT Sbjct: 65 KKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRYMLVDGHGNFGSVDGDGAAAMRYT 124 Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192 EARM+++A +L+ ++++ VDF+ Y++ + EPVV P++FPNLL NGT+GIAVGMAT+IP Sbjct: 125 EARMSKIATEMLRDINKNTVDFQSNYDDTEKEPVVLPARFPNLLVNGTTGIAVGMATNIP 184 Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252 HN+ E+ A L+DNP+++ +L+E + GPDFPTGG+++ + I +Y G+G V Sbjct: 185 PHNLSEVVAAIDLLMDNPDVTTNELMEVLPGPDFPTGGLVM-GKSGIRRAYETGKGSITV 243 Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRI 311 RA+ + E+ G I+VTE+PY V K++LIE+I+EL KRI + D+RDES+ E +RI Sbjct: 244 RAKVEITEMPNGKERIIVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMRI 303 Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371 V+ + R +++ +++ L+ ++ F NM + G VP+V+ L IL+ ++ H+REV Sbjct: 304 VIDIR-RDASASVILNNLYKLTSLQNSFGFNMLAIEKG-VPKVLSLKQILENYIEHQREV 361 Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQV 428 + RR+ F + + R IL+GL IA +IDEIIAIIR ++D+ K M+ RF L++ Q Sbjct: 362 ITRRTVFEKEKAEARAHILEGLRIALDHIDEIIAIIRGSKSDDEAKATMIERFDLSDRQS 421 Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488 AIL++RLR L LE +I++E LL E + +L ++ I E+ ++ + F Sbjct: 422 QAILDMRLRRLTGLEREKIENEYQELLKLIEDLTDILARPERVTEIIKNELADLNQRF-- 479 Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DL 540 G +R T V + + E+E + + ++N G+I+ L ++ + Sbjct: 480 ----GDKRRTELLVGEVLSLEDEDLIEEEEIV-ITLTNNGYIKRLANNEFRAQRRGGRGV 534 Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573 + D +K + T D +L + +GK Y Sbjct: 535 QGMGIHNDDFVKNLVSCSTHDTLLFFTNNGKVY 567 >gi|261206922|ref|ZP_05921611.1| DNA gyrase subunit A [Enterococcus faecium TC 6] gi|289566501|ref|ZP_06446925.1| DNA gyrase, A subunit [Enterococcus faecium D344SRF] gi|294616654|ref|ZP_06696425.1| DNA gyrase, A subunit [Enterococcus faecium E1636] gi|260078550|gb|EEW66252.1| DNA gyrase subunit A [Enterococcus faecium TC 6] gi|289161710|gb|EFD09586.1| DNA gyrase, A subunit [Enterococcus faecium D344SRF] gi|291590474|gb|EFF22212.1| DNA gyrase, A subunit [Enterococcus faecium E1636] Length = 823 Score = 434 bits (1115), Expect = e-119, Method: Compositional matrix adjust. Identities = 231/573 (40%), Positives = 364/573 (63%), Gaps = 22/573 (3%) Query: 13 VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72 + EN+ V+L +++ ++ YA+S I RA+PD+RDG KPVHRRI++ M+E+G+ A Sbjct: 5 IRENIHDVNLTSEMKDSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKAH 64 Query: 73 KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132 KKSARIVG+V+GK HPHGD ++Y+S+VR+AQPF RY L+ G GNFG++DGD AAA RYT Sbjct: 65 KKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRYMLVDGHGNFGSVDGDGAAAMRYT 124 Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192 EARM+++A +L+ ++++ VDF+ Y++ + EPVV P++FPNLL NGT+GIAVGMAT+IP Sbjct: 125 EARMSKIATEMLRDINKNTVDFQSNYDDTEKEPVVLPARFPNLLVNGTTGIAVGMATNIP 184 Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252 HN+ E+ A L+DNP+++ +L+E + GPDFPTGG+++ + I +Y G+G V Sbjct: 185 PHNLSEVVAAIDLLMDNPDVTTNELMEVLPGPDFPTGGLVM-GKSGIRRAYETGKGSITV 243 Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRI 311 RA+ + E+ G I+VTE+PY V K++LIE+I+EL KRI + D+RDES+ E +RI Sbjct: 244 RAKVEITEMPNGKERIIVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMRI 303 Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371 V+ + R +++ +++ L+ ++ F NM + G VP+V+ L IL+ ++ H+REV Sbjct: 304 VIDIR-RDASASVILNNLYKLTSLQNSFGFNMLAIEKG-VPKVLSLKQILENYIEHQREV 361 Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQV 428 + RR+ F + + R IL+GL IA +IDEIIAIIR ++D+ K M+ RF L++ Q Sbjct: 362 ITRRTVFEKEKAEARAHILEGLRIALDHIDEIIAIIRGSKSDDEAKATMIERFDLSDRQS 421 Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488 AIL++RLR L LE +I++E LL E + +L ++ I E+ ++ + F Sbjct: 422 QAILDMRLRRLTGLEREKIENEYQELLKLIEDLTDILARPERVTEIIKNELADLNQRF-- 479 Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DL 540 G +R T V + + E+E + + ++N G+I+ L ++ + Sbjct: 480 ----GDKRRTELLVGEVLSLEDEDLIEEEEIV-ITLTNNGYIKRLANNEFRAQRRGGRGV 534 Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573 + D +K + T D +L + +GK Y Sbjct: 535 QGMGIHNDDFVKNLVSCSTHDTLLFFTNNGKVY 567 >gi|297624155|ref|YP_003705589.1| DNA gyrase subunit A [Truepera radiovictrix DSM 17093] gi|297165335|gb|ADI15046.1| DNA gyrase, A subunit [Truepera radiovictrix DSM 17093] Length = 827 Score = 434 bits (1115), Expect = e-119, Method: Compositional matrix adjust. Identities = 239/573 (41%), Positives = 362/573 (63%), Gaps = 23/573 (4%) Query: 12 LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71 L E V V + ++ ++ YA+S I +RA+PD+RDG KPV RRI++AM E+GL Sbjct: 5 LNEGQVVPVVITDEIKTSFINYAMSVIVDRALPDVRDGLKPVQRRILYAMQELGLFPRNK 64 Query: 72 FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131 + KSA +VGEVI K HPHGD ++YD++VR+AQ + RY L+ GQGNFG+IDGD AAAYRY Sbjct: 65 YVKSAGVVGEVIKKYHPHGDTAIYDAMVRMAQDWNVRYTLVDGQGNFGSIDGDPAAAYRY 124 Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191 TEARMT VAE IL +D++ VDF++ ++ EP V PS PN+L NG SGIAVGMAT+I Sbjct: 125 TEARMTSVAEAILADIDKETVDFKENFDGTTVEPEVLPSAVPNMLVNGASGIAVGMATNI 184 Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251 P HN+ E+ + LA++DNPEI++++L+E+I GPDFPTGG++ SR I +++ GRG R Sbjct: 185 PPHNLGEVVDGLLAMLDNPEITLDELMEHIKGPDFPTGGVM--SRTGIRQAFETGRGSIR 242 Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311 +RA+ EE GRG+ IVVTEIPYQV K+ LI+ A L+ +KRI + +IRDES Sbjct: 243 LRAKVRFEERGRGT-SIVVTEIPYQVNKTSLIQTAAGLVRSKRIEDIANIRDESDRQGMR 301 Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371 ++F R P+L++ ++ + +++ F +N N+ + R P+V+PL L +L HR +V Sbjct: 302 IVFELKRGAHPELVLNQLYKYTQLQSTFSVN-NLAIVDRSPRVLPLKDALALFLDHRADV 360 Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDKP--KPVMVSRFSLTENQV 428 + RR++F ++ R IL+G LIA +DE+IA+IR + D P + +V+ F LTE Q Sbjct: 361 VRRRTTFELRKARERAHILEGYLIALERLDEVIALIRGSADGPTAREGLVAEFGLTEVQA 420 Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488 A+L++RL+ L LE +++ E L AE +++++L + I E+REVK+ F+ Sbjct: 421 QAVLDMRLQRLTGLEREKLQGEYRELQAEIARLEAILGDANELRKVIKRELREVKKNFAD 480 Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDL 540 + RRT ++S D ++ +I +E + V ++ G+I R+ + Sbjct: 481 A-----RRT---QISDNDSDISKEDLIAEEHMVVTLTRGGYIKRTPLAAYRAQARGGRGV 532 Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573 +A KE D + + +T D +L + G+ Y Sbjct: 533 NAQKAKEDDINSMLIVGNTHDYLLFFTDRGRVY 565 >gi|196249899|ref|ZP_03148595.1| DNA gyrase, A subunit [Geobacillus sp. G11MC16] gi|196210775|gb|EDY05538.1| DNA gyrase, A subunit [Geobacillus sp. G11MC16] Length = 822 Score = 434 bits (1115), Expect = e-119, Method: Compositional matrix adjust. Identities = 227/568 (39%), Positives = 357/568 (62%), Gaps = 20/568 (3%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 ++ V++ + +L YA+S I RA+PD+RDG KPVHRRI++AM ++G+ +KKSA Sbjct: 9 IREVNISQEMRSSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMHDLGMTADKPYKKSA 68 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 RIVGEVIGK HPHGD +VYD++VR+AQ F RY L+ G GNFG+IDGD+AAA RYTEARM Sbjct: 69 RIVGEVIGKYHPHGDAAVYDTMVRMAQDFNYRYMLVDGHGNFGSIDGDAAAAMRYTEARM 128 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 +++A +L+ +++D +D++D Y+ + EPVV PS+FPNLL NG+SGIAVGMAT+IP H + Sbjct: 129 SKIAMELLRDINKDTIDYQDNYDGSEKEPVVLPSRFPNLLVNGSSGIAVGMATNIPPHQL 188 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ +A LAL NPE+++ L+EYI GPDFPT G I+ R I ++Y GRG +RA+ Sbjct: 189 GEVIDALLALSQNPEMTVADLMEYIPGPDFPTAGQII-GRSGIRKAYETGRGSITLRAKA 247 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316 +E+ G I+V+E+PYQV K++LIE+IAEL+ ++I + D+RDES + ++ Sbjct: 248 EIEQHANGKATIIVSELPYQVNKAKLIERIAELVRERKIDGITDLRDESDRNGMRIVIEV 307 Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376 R + +++ +++ + ++T F +NM L G P+V+ L L+ +L H++ V+ RR+ Sbjct: 308 RRDANAKVVLNNLYKYTALQTSFGINMLALVNGE-PKVLNLKECLEHYLNHQKTVIRRRT 366 Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVDAILN 433 +F ++ + R IL+GL IA ++DE+I +IR + ++ RFSL+E Q AIL+ Sbjct: 367 AFELKKAEARAHILEGLRIALDHLDEVIDLIRRSQTTEAAREGLMERFSLSERQAQAILD 426 Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493 +RL+ L LE +I+ E +++ ++ ++L ++ I E+ E+KE F+ D Sbjct: 427 MRLQRLTGLEREKIEQEYQDIVRLIAELRAVLADEEKVLQIIRDELSEIKERFN---DER 483 Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHF 545 R V + D + +I E I + ++++G+I RS K + +H Sbjct: 484 RTEIVVGAVEQLD----DEDLIPHEHIVITLTHKGYIKRLPLSTYRSQKRGGRGVQGMHT 539 Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAY 573 E D ++ L T D +L + GK Y Sbjct: 540 SEDDFVEHLLITSTHDTVLFFTNKGKVY 567 >gi|138893685|ref|YP_001124138.1| DNA gyrase subunit A [Geobacillus thermodenitrificans NG80-2] gi|134265198|gb|ABO65393.1| DNA gyrase subunit A [Geobacillus thermodenitrificans NG80-2] Length = 822 Score = 434 bits (1115), Expect = e-119, Method: Compositional matrix adjust. Identities = 228/568 (40%), Positives = 358/568 (63%), Gaps = 20/568 (3%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 ++ V++ + +L YA+S I RA+PD+RDG KPVHRRI++AM ++G+ +KKSA Sbjct: 9 IREVNISQEMRSSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMHDLGMTADKPYKKSA 68 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 RIVGEVIGK HPHGD +VYD++VR+AQ F RY L+ G GNFG+IDGD+AAA RYTEARM Sbjct: 69 RIVGEVIGKYHPHGDAAVYDTMVRMAQDFNYRYMLVDGHGNFGSIDGDAAAAMRYTEARM 128 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 +++A +L+ +++D +D++D Y+ + EPVV PS+FPNLL NG+SGIAVGMAT+IP H + Sbjct: 129 SKIAMELLRDINKDTIDYQDNYDGSEKEPVVLPSRFPNLLVNGSSGIAVGMATNIPPHQL 188 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ +A LAL NPE+++ L+EYI GPDFPT G I+ R I ++Y GRG +RA+ Sbjct: 189 GEVIDALLALSQNPEMTVADLMEYIPGPDFPTAGQII-GRSGIRKAYETGRGSITLRAKA 247 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316 +E+ G I+V+E+PYQV K++LIE+IAEL+ ++I + D+RDES + ++ Sbjct: 248 EIEQHANGKETIIVSELPYQVNKAKLIERIAELVRERKIDGITDLRDESDRNGMRIVIEV 307 Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376 R + +++ +++ + ++T F +NM L G P+V+ L L+ +L H++ V+ RR+ Sbjct: 308 RRDANAKVVLNNLYKYTALQTSFGINMLALVNGE-PKVLNLKECLEHYLNHQKTVIRRRT 366 Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVDAILN 433 +F ++ + R IL+GL IA ++DE+I +IR + ++ RFSL+E Q AIL+ Sbjct: 367 AFELKKAEARAHILEGLRIALDHLDEVIDLIRRSQTTEAAREGLMERFSLSERQAQAILD 426 Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493 +RL+ L LE +I+ E +++ ++ ++L ++ I E+ E+KE F+ Sbjct: 427 MRLQRLTGLEREKIEQEYQDIVRLIAELRAVLADEEKVLQIIRDELSEIKERFNDE---- 482 Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHF 545 RRT V A + + +I E I + ++++G+I RS K + +H Sbjct: 483 -RRTEI--VVGAVEQLDDEDLIPHEHIVITLTHKGYIKRLPLSTYRSQKRGGRGVQGMHT 539 Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAY 573 E D ++ L T D +L + GK Y Sbjct: 540 SEDDFVEHLLITSTHDTVLFFTNKGKVY 567 >gi|167635125|ref|ZP_02393442.1| DNA gyrase, A subunit [Bacillus anthracis str. A0442] gi|254742122|ref|ZP_05199809.1| DNA gyrase subunit A [Bacillus anthracis str. Kruger B] gi|167529599|gb|EDR92349.1| DNA gyrase, A subunit [Bacillus anthracis str. A0442] Length = 823 Score = 434 bits (1115), Expect = e-119, Method: Compositional matrix adjust. Identities = 253/704 (35%), Positives = 416/704 (59%), Gaps = 50/704 (7%) Query: 9 SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68 S+ + ++ +++ + +L YA+S I RA+PD+RDG KPVHRR+++AM+++G+ Sbjct: 2 SDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 61 Query: 69 GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128 A+KKSARIVGEVIGK HPHGD +VY+++VR+AQ F QRY L+ G GNFG++DGDSAAA Sbjct: 62 DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 121 Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188 RYTEARM++++ +++ + ++ +D++D Y+ + EP+V P++FPNLL NGT+GIAVGMA Sbjct: 122 MRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMA 181 Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248 T+IP H + E+ + LAL NP+I+I +L+E I GPDFPT G+I+ R I +Y GRG Sbjct: 182 TNIPPHQLGEVIDGVLALSHNPDITIAELMECIPGPDFPTAGLIL-GRSGIRRAYETGRG 240 Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308 +RA+ +EE G I+VTE+PYQV K+RLIEKIAEL+ K+I + D+RDES + Sbjct: 241 SIMLRAKVEIEEKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRN 300 Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368 ++ R + ++L+ +++ + ++T F +NM L G PQV+ L L +L H+ Sbjct: 301 GMRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGE-PQVLNLKQNLYHYLEHQ 359 Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTE 425 + V+ RR+++ ++ + R IL+GL IA ++DE+I +IR+ K ++ RF L+E Sbjct: 360 KVVIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTAEIAKQGLMERFGLSE 419 Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485 Q AIL++RL+ L LE +I+ E +L+ ++ ++L ++ I E+ EVKE Sbjct: 420 KQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIAELKAILADEEKVLEIIREELTEVKER 479 Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSLKSHSVD----- 539 F+ +RRT E++ +++ + +I ++ I + +++ G+I+ L + + Sbjct: 480 FND-----KRRT---EITIGGMESIEDEDLIPEQNIAITLTHNGYIKRLPASTYKTQNRG 531 Query: 540 ---LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLL 581 + + + D ++ L T D IL + GK Y +P NLL Sbjct: 532 GRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEIPEYSRTAKGIPIINLL 591 Query: 582 SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR-KGKT 640 G GE I +I + D F++ +T + + + ++F AN R G Sbjct: 592 -GVDKGEWINAIIPIREFGD--DEFLFFTTKQGISKRTPLSSF--------ANIRTNGLI 640 Query: 641 FLKVSSEEKMKLVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSR 683 + + E+++ V +GD +VG + +LI F+ + M R Sbjct: 641 AISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGR 684 >gi|257885592|ref|ZP_05665245.1| DNA gyrase subunit A [Enterococcus faecium 1,231,501] gi|257821448|gb|EEV48578.1| DNA gyrase subunit A [Enterococcus faecium 1,231,501] Length = 823 Score = 433 bits (1114), Expect = e-119, Method: Compositional matrix adjust. Identities = 231/573 (40%), Positives = 364/573 (63%), Gaps = 22/573 (3%) Query: 13 VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72 + EN+ V+L +++ ++ YA+S I RA+PD+RDG KPVHRRI++ M+E+G+ A Sbjct: 5 IRENIHDVNLTSEMKDSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKAH 64 Query: 73 KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132 KKSARIVG+V+GK HPHGD ++Y+S+VR+AQPF RY L+ G GNFG++DGD AAA RYT Sbjct: 65 KKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRYMLVDGHGNFGSVDGDGAAAMRYT 124 Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192 EARM+++A +L+ ++++ VDF+ Y++ + EPVV P++FPNLL NGT+GIAVGMAT+IP Sbjct: 125 EARMSKIATEMLRDINKNTVDFQSNYDDTEKEPVVLPARFPNLLVNGTTGIAVGMATNIP 184 Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252 HN+ E+ A L+DNP+++ +L+E + GPDFPTGG+++ + I +Y G+G V Sbjct: 185 PHNLSEVVAAIDLLMDNPDVTTNELMEVLPGPDFPTGGLVM-GKSGIRRAYETGKGSITV 243 Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRI 311 RA+ + E+ G I+VTE+PY V K++LIE+I+EL KRI + D+RDES+ E +RI Sbjct: 244 RAKVEITEMPNGKERIIVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMRI 303 Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371 V+ + R +++ +++ L+ ++ F NM + G VP+V+ L IL+ ++ H+REV Sbjct: 304 VIDIR-RDASASVILNNLYKLTSLQNSFGFNMLAIEKG-VPKVLSLKQILENYIEHQREV 361 Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQV 428 + RR+ F + + R IL+GL IA +IDEIIAIIR ++D+ K M+ RF L++ Q Sbjct: 362 ITRRTVFEKEKAEARAHILEGLRIALDHIDEIIAIIRGSKSDDEAKATMIERFDLSDRQS 421 Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488 AIL++RLR L LE +I++E LL E + +L ++ I E+ ++ + F Sbjct: 422 QAILDMRLRRLTGLEREKIENEYQELLKLIEDLTDILARPERVTEIIKNELADLNQRF-- 479 Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DL 540 G +R T V + + E+E + + ++N G+I+ L ++ + Sbjct: 480 ----GDKRRTELLVGEVLSLEDEDLIEEEEIV-ITLTNNGYIKRLANNEFRAQRRGGRGV 534 Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573 + D +K + T D +L + +GK Y Sbjct: 535 QGMGIHNDDFVKNLVSCSTHDTLLFFTNNGKVY 567 >gi|257899276|ref|ZP_05678929.1| DNA gyrase subunit A [Enterococcus faecium Com15] gi|293553552|ref|ZP_06674179.1| DNA gyrase, A subunit [Enterococcus faecium E1039] gi|293572723|ref|ZP_06683687.1| DNA gyrase, A subunit [Enterococcus faecium E980] gi|257837188|gb|EEV62262.1| DNA gyrase subunit A [Enterococcus faecium Com15] gi|291602307|gb|EFF32532.1| DNA gyrase, A subunit [Enterococcus faecium E1039] gi|291607215|gb|EFF36573.1| DNA gyrase, A subunit [Enterococcus faecium E980] Length = 823 Score = 433 bits (1114), Expect = e-119, Method: Compositional matrix adjust. Identities = 231/573 (40%), Positives = 364/573 (63%), Gaps = 22/573 (3%) Query: 13 VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72 + EN+ V+L +++ ++ YA+S I RA+PD+RDG KPVHRRI++ M+E+G+ A Sbjct: 5 IRENIHDVNLTSEMKDSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKAH 64 Query: 73 KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132 KKSARIVG+V+GK HPHGD ++Y+S+VR+AQPF RY L+ G GNFG++DGD AAA RYT Sbjct: 65 KKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRYMLVDGHGNFGSVDGDGAAAMRYT 124 Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192 EARM+++A +L+ ++++ VDF+ Y++ + EPVV P++FPNLL NGT+GIAVGMAT+IP Sbjct: 125 EARMSKIATEMLRDINKNTVDFQSNYDDTEKEPVVLPARFPNLLVNGTTGIAVGMATNIP 184 Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252 HN+ E+ A L+DNP+++ +L+E + GPDFPTGG+++ + I +Y G+G V Sbjct: 185 PHNLSEVVAAIDLLMDNPDVTTNELMEVLPGPDFPTGGLVM-GKSGIRRAYETGKGSITV 243 Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRI 311 RA+ + E+ G I+VTE+PY V K++LIE+I+EL KRI + D+RDES+ E +RI Sbjct: 244 RAKVEITEMPNGKERILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMRI 303 Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371 V+ + R +++ +++ L+ ++ F NM + G VP+V+ L IL+ ++ H+REV Sbjct: 304 VIDVR-RDASASVILNNLYKLTSLQNSFGFNMLAIEKG-VPKVLSLKQILENYIEHQREV 361 Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQV 428 + RR+ F + + R IL+GL IA +IDEIIAIIR ++D+ K M+ RF L++ Q Sbjct: 362 ITRRTVFEKEKAEARAHILEGLRIALDHIDEIIAIIRGSKSDDEAKATMIERFDLSDRQS 421 Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488 AIL++RLR L LE +I++E LL E + +L ++ I E+ ++ + F Sbjct: 422 QAILDMRLRRLTGLEREKIENEYQELLKLIEDLTDILARPERVTEIIKNELADLNQRF-- 479 Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DL 540 G +R T V + + E+E + + ++N G+I+ L ++ + Sbjct: 480 ----GDKRRTELLVGEVLSLEDEDLIEEEEIV-ITLTNNGYIKRLANNEFRAQRRGGRGV 534 Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573 + D +K + T D +L + +GK Y Sbjct: 535 QGMGIHNDDFVKNLVSCSTHDTLLFFTNNGKVY 567 >gi|257878651|ref|ZP_05658304.1| DNA gyrase subunit A [Enterococcus faecium 1,230,933] gi|257812879|gb|EEV41637.1| DNA gyrase subunit A [Enterococcus faecium 1,230,933] Length = 823 Score = 433 bits (1114), Expect = e-119, Method: Compositional matrix adjust. Identities = 231/573 (40%), Positives = 364/573 (63%), Gaps = 22/573 (3%) Query: 13 VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72 + EN+ V+L +++ ++ YA+S I RA+PD+RDG KPVHRRI++ M+E+G+ A Sbjct: 5 IRENIHDVNLTSEMKDSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKAH 64 Query: 73 KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132 KKSARIVG+V+GK HPHGD ++Y+S+VR+AQPF RY L+ G GNFG++DGD AAA RYT Sbjct: 65 KKSARIVGDVMGKYHPHGDYAIYESMVRMAQPFSYRYMLVDGHGNFGSVDGDGAAAMRYT 124 Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192 EARM+++A +L+ ++++ VDF+ Y++ + EPVV P++FPNLL NGT+GIAVGMAT+IP Sbjct: 125 EARMSKIATEMLRDINKNTVDFQSNYDDTEKEPVVLPARFPNLLVNGTTGIAVGMATNIP 184 Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252 HN+ E+ A L+DNP+++ +L+E + GPDFPTGG+++ + I +Y G+G V Sbjct: 185 PHNLSEVVAAIDLLMDNPDVTTNELMEVLPGPDFPTGGLVM-GKSGIRRAYETGKGSITV 243 Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRI 311 RA+ + E+ G I+VTE+PY V K++LIE+I+EL KRI + D+RDES+ E +RI Sbjct: 244 RAKVEITEMPNGKERIIVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMRI 303 Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371 V+ + R +++ +++ L+ ++ F NM + G VP+V+ L IL+ ++ H+REV Sbjct: 304 VIDIR-RDASASVILNNLYKLTSLQNSFGFNMLAIEKG-VPKVLSLKQILENYIEHQREV 361 Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQV 428 + RR+ F + + R IL+GL IA +IDEIIAIIR ++D+ K M+ RF L++ Q Sbjct: 362 ITRRTVFEKEKAEARAHILEGLRIALDHIDEIIAIIRGSKSDDEAKATMIERFDLSDRQS 421 Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488 AIL++RLR L LE +I++E LL E + +L ++ I E+ ++ + F Sbjct: 422 QAILDMRLRRLTGLEREKIENEYQELLKLIEDLTDILARPERVTEIIKNELADLNQRF-- 479 Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DL 540 G +R T V + + E+E + + ++N G+I+ L ++ + Sbjct: 480 ----GDKRRTELLVGEVLSLEDEDLIEEEEIV-ITLTNNGYIKRLANNEFRAQRRGGRGV 534 Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573 + D +K + T D +L + +GK Y Sbjct: 535 QGMGIHNDDFVKNLVSCSTHDTLLFFTNNGKVY 567 >gi|304315546|ref|YP_003850691.1| DNA gyrase subunit alpha [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302777048|gb|ADL67607.1| DNA gyrase, A subunit [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 815 Score = 433 bits (1113), Expect = e-119, Method: Compositional matrix adjust. Identities = 257/679 (37%), Positives = 415/679 (61%), Gaps = 32/679 (4%) Query: 6 ISNSNTLVEE-NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEM 64 +S++NT EE V V + +++ ++ YA+S I RA+PD+RDG KPVHRRI++AM+ + Sbjct: 1 MSDNNTNNEEMRVIPVDVEDEMKKSFIDYAMSVIVSRALPDVRDGLKPVHRRILYAMNGL 60 Query: 65 GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124 GL +KKS +VGEV+GK HPHGD +VYD++VR+AQ F R L+ G GNFG+IDGD Sbjct: 61 GLTPDKPYKKSVSVVGEVLGKYHPHGDVAVYDAMVRMAQDFSMRETLVDGHGNFGSIDGD 120 Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184 AAA RYTEAR++++A +L ++++ VDF ++E EPVV PS+FPN+L NG+ GIA Sbjct: 121 PAAAMRYTEARLSKIALEMLTDINKETVDFVPNFDENYKEPVVLPSRFPNILVNGSQGIA 180 Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244 VGMAT+IP HN+ E+ + +A IDNP I+ E L++YI GPDFPTGG+IV ++ I E+Y Sbjct: 181 VGMATNIPPHNLGEVIDGIIAYIDNPYITTEGLMKYIKGPDFPTGGLIV-GKDGIRETYE 239 Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304 GRG VRA+ +EE G IV+TE+PY V KS+L+EKIAEL+ K I + D+RDE Sbjct: 240 TGRGKIIVRAKAEIEE-HNGRNRIVITEVPYMVIKSKLVEKIAELVRDKHIEGISDLRDE 298 Query: 305 SAED-VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363 S + +RIV+ K R ++P +++ ++M + M+ F M L G P+++ L+ I+++ Sbjct: 299 SDRNGMRIVIELK-RDVNPKVVLNKLYMHTQMQQTFGAIMLALVDG-APKILSLNQIIEK 356 Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV----MVS 419 ++ H+ +V+ RR+ F +Q + R IL+GL IA +IDE+I +IR+ K +P+ ++ Sbjct: 357 YVDHQVDVITRRTRFELQKAEERAHILEGLKIALDHIDEVINVIRSS-KTEPIAKKNLMD 415 Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479 +F L++ Q AI+++RL L LE +++ EL+ L + E++ +L K+ I E+ Sbjct: 416 KFGLSDKQSQAIVDMRLGRLTGLERQKVEDELNELYRKIEELKGILADEKKVLEIIKKEL 475 Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------R 531 +E+K+ FS R+T V++ D+ ++ +++ E V +++ G+I + Sbjct: 476 KEIKDKFS-----SERKTHI--VAKVDEMDIED-LVQLEDAVVTMTHFGYIKRMPLDAYK 527 Query: 532 SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEA 589 S K +S + +E D ++ T DR+L + GK Y+L ++ SGR G A Sbjct: 528 SQKRGGKGISGISTREDDFVENVFTTTTHDRLLFFTNKGKVYSLRTIDIPESGRQAKGTA 587 Query: 590 IQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEI--IANTRK-GKTFLKVSS 646 I LI ++ ++ + + K V I++++EI +K G T +K+ Sbjct: 588 IVNLIQIDQDEKVSAVIPIKKSVKAKYVVMCTKKGIIKKTEIDDFPKIKKSGNTAIKLDD 647 Query: 647 EEKMKLVVKVTGDHVAVVG 665 +++ V+ GD ++G Sbjct: 648 GDELINVMLTNGDREIIIG 666 >gi|251794044|ref|YP_003008775.1| DNA gyrase subunit alpha [Paenibacillus sp. JDR-2] gi|247541670|gb|ACS98688.1| DNA gyrase, A subunit [Paenibacillus sp. JDR-2] Length = 835 Score = 433 bits (1113), Expect = e-119, Method: Compositional matrix adjust. Identities = 264/689 (38%), Positives = 413/689 (59%), Gaps = 40/689 (5%) Query: 26 LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85 + + ++ YA+S I RA+PD+RDG KPVHRRI++AMSE+G+ +KKSARIVGEVIGK Sbjct: 19 MRDSFMDYAMSIIVSRALPDVRDGLKPVHRRILYAMSELGMSSDKPYKKSARIVGEVIGK 78 Query: 86 LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145 HPHGD SVY+++VR+AQ F RY L+ G GNFG+IDGD AAA RYTEAR++++A +L+ Sbjct: 79 YHPHGDSSVYEAMVRMAQDFSMRYMLVDGHGNFGSIDGDMAAAMRYTEARLSKIAMEMLR 138 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 ++++ VDF Y+ E+ EP V PS+FPNLL NG +GIAVGMAT+IP HN+ E+ + A Sbjct: 139 DLNKETVDFVPNYDGEEKEPAVLPSRFPNLLVNGVTGIAVGMATNIPPHNLTEVIDGIQA 198 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265 LI NPEI+ +L++Y+ GPDFPT GI++ I ++Y GRG +RAR +EE G + Sbjct: 199 LIRNPEITPVELIDYVKGPDFPTAGIVM-GLSGIRQAYLTGRGTVTMRARATIEENGNKA 257 Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325 I+V E+PYQV K+RL+EKIAEL+ K+I + D+RDES + V+ R + P ++ Sbjct: 258 R-IIVYELPYQVNKARLVEKIAELVREKKIEGITDLRDESDRNGMRVVIELRRDVTPSVV 316 Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385 + +++ + M++ F +NM L G P+ + + +L +L H+ EV+ RR+ + ++ + Sbjct: 317 LNNLYKQTQMQSNFGINMLALVNGE-PKTLNIREMLYYYLQHQIEVIRRRTEYDLKKAEA 375 Query: 386 RVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKL 442 R IL+GL IA ++DE+IA+IR D + ++ RF+L+ Q AIL++RL+ L L Sbjct: 376 RAHILEGLRIALDHLDEVIALIRASQTADIAREGLIERFALSYEQAQAILDMRLQRLTGL 435 Query: 443 EEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEV 502 E +I++E L+ + + ++L + N I+ E+ E+KE F RRT E+ Sbjct: 436 ERDKIEAEYAELMKKIAEYKAILADEQLVLNIISDELNEIKERFGDE-----RRT---EI 487 Query: 503 SRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIA 554 + +D+ L + +I +E + + I++ G+I RS K + + KE D ++ Sbjct: 488 TVSDEEILDEDLIPREDVIISITHTGYIKRLPVTTYRSQKRGGKGVVGMDTKEHDFVEHL 547 Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDI---VTAFVYD 609 ++T +L + GK Y L A + LS G I LI + + I + +D Sbjct: 548 FVSNTHHYLLFFTNKGKVYRLKAYEIPDLSRTARGTPIINLIQIEQGETINAVIPVESFD 607 Query: 610 STCKLLVVSSKGNAFIVEESEI--IANTRKGKTFLKVSSEEKMKLV-VKVT-GDHVAVVG 665 S L + +G IV+++ + N RK + +S E +L+ VK+T G+ V+G Sbjct: 608 SESYLFFATRQG---IVKKTPLDDYMNIRK-VGLIAISIREDDELIGVKLTDGNQEIVMG 663 Query: 666 ENRKLLI-FSIDQIPEMSRG----KGVRL 689 + + I FS + M R KG++L Sbjct: 664 TAQGMSIRFSEQDVRSMGRSATGVKGIQL 692 >gi|294794230|ref|ZP_06759366.1| DNA gyrase, A subunit [Veillonella sp. 3_1_44] gi|294454560|gb|EFG22933.1| DNA gyrase, A subunit [Veillonella sp. 3_1_44] Length = 803 Score = 433 bits (1113), Expect = e-119, Method: Compositional matrix adjust. Identities = 273/752 (36%), Positives = 417/752 (55%), Gaps = 67/752 (8%) Query: 26 LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85 ++ Y+ YA+S I RA+PD+RDG KPVHRRI++AM E G+ +KKSARIVG+V+GK Sbjct: 1 MKNAYIDYAMSVIVMRALPDVRDGLKPVHRRILYAMHETGMTPNKPYKKSARIVGDVLGK 60 Query: 86 LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145 HPHGD SVYD+ VRLAQ F RY L+ G GNFG+IDGDSAAA RYTE RM ++ + +L Sbjct: 61 YHPHGDISVYDATVRLAQDFNTRYLLVDGHGNFGSIDGDSAAAMRYTEVRMAKITQEMLA 120 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 +D++ VDF Y+E EP V P+K PNLL NG+SGIAVGMAT+IP HN+ E+C Sbjct: 121 DIDKETVDFMPNYDESLQEPTVLPAKIPNLLINGSSGIAVGMATNIPPHNLNEVCNGLAM 180 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265 LIDNP++++++L+ I GPDFPTG +I+ RE I ++Y GRG ++RAR +EE+ +G Sbjct: 181 LIDNPDVTVDELMTAIKGPDFPTGALIL-GREGIKKAYSTGRGSVKMRARATIEEMSKGK 239 Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325 IVVTEIPYQV K+R+IE IA L K I + +RDES ++ + PD++ Sbjct: 240 HKIVVTEIPYQVNKARVIETIANLSRDKVIDGITALRDESDRQGMRIVIELRADVQPDIV 299 Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385 + ++ + ++ F + M L G P+V+ L +L +L HR +V+ RR+ F + + Sbjct: 300 LNKLYKHTQLQETFGVIMLALVDGH-PRVLNLKEVLGYYLDHRLDVIVRRTQFELNKAEA 358 Query: 386 RVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLTENQVDAILNLRLRSLRKL 442 R IL+GLLIA +IDE+IA IR+ ++ + ++ +F L+E Q AIL++RLR L L Sbjct: 359 RAHILEGLLIALDHIDEVIATIRSSQTDEIARNALMQKFGLSEKQAVAILDMRLRRLTGL 418 Query: 443 EEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEV 502 E +I+ E LLA E + ++L + +Q I E+ ++K+ + RR + Sbjct: 419 EREKIEEEYKELLALIEDLKAILANEARQRQIIKDELDDMKKKYGDP----RRSEITIDT 474 Query: 503 SRADKATLQQAMIEKEPITVVISNRGWIRSLKSH--------SVDLSALHFKEGDSLKIA 554 S D + +I E + + ++ +G+I+ + ++ + + KE D + Sbjct: 475 SDLD----VEDLIADEEMVITLTKQGYIKRMNANVYRNQHKGGAGVIGMKTKEDDYVTQI 530 Query: 555 LHAHTTDRILLLSTDGKAYTL-----PAGNLLSGRGH----------GEAIQLLIDLNHN 599 +H T + +L ++ G+AY L P + RG GE++ +IDL Sbjct: 531 MHVRTHNTLLFFTSTGRAYRLKAYEVPEAGSRNSRGTAMVNVLPLAVGESVTTMIDLERV 590 Query: 600 QDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD 659 + V F+ + VV +EE I R G + + +++ V TG+ Sbjct: 591 HEDVNLFM---VTEFGVVKRTA----IEEYRNI--RRSGLNAINLDEGDRLISVNVTTGN 641 Query: 660 HVAVVGENRKLLI-FSIDQIPEMSRG----KGVRLQSYKDGGISDVICFKICEGLTWID- 713 ++G + I FS + M R +G++L + DV+ + G+ D Sbjct: 642 QDILIGTKLGIAIRFSEHDVRLMKRAAHGVRGIKLNA------GDVV---VGAGVLNTDE 692 Query: 714 SAGRSYNRSE------NDLLGW-LGKRGGVGS 738 S + + SE ND + L KRGG GS Sbjct: 693 SEAQVFTISEEGFGKRNDAEAYTLQKRGGKGS 724 >gi|227550645|ref|ZP_03980694.1| DNA topoisomerase (ATP-hydrolyzing) [Enterococcus faecium TX1330] gi|257896292|ref|ZP_05675945.1| DNA gyrase subunit A [Enterococcus faecium Com12] gi|293379373|ref|ZP_06625517.1| DNA gyrase, A subunit [Enterococcus faecium PC4.1] gi|227180224|gb|EEI61196.1| DNA topoisomerase (ATP-hydrolyzing) [Enterococcus faecium TX1330] gi|257832857|gb|EEV59278.1| DNA gyrase subunit A [Enterococcus faecium Com12] gi|292641896|gb|EFF60062.1| DNA gyrase, A subunit [Enterococcus faecium PC4.1] Length = 823 Score = 433 bits (1113), Expect = e-119, Method: Compositional matrix adjust. Identities = 231/573 (40%), Positives = 360/573 (62%), Gaps = 22/573 (3%) Query: 13 VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72 + EN+ V+L +++ ++ YA+S I RA+PD+RDG KPVHRRI++ M+E+G+ A Sbjct: 5 IRENIHDVNLTSEMKDSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKAH 64 Query: 73 KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132 KKSARIVG+V+GK HPHGD ++Y+S+VR+AQPF RY L+ G GNFG++DGD AAA RYT Sbjct: 65 KKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRYMLVDGHGNFGSVDGDGAAAMRYT 124 Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192 EARM+++A +L+ ++++ VDF+ Y++ + EPVV P++FPNLL NGT+GIAVGMAT+IP Sbjct: 125 EARMSKIATEMLRDINKNTVDFQSNYDDTEKEPVVLPARFPNLLVNGTTGIAVGMATNIP 184 Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252 HN+ E+ A L+DNP+++ +L+E + GPDFPTGG+++ + I +Y G+G V Sbjct: 185 PHNLSEVVAAIDLLMDNPDVTTNELMEVLPGPDFPTGGLVM-GKSGIRRAYETGKGSITV 243 Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRI 311 RA+ + E+ G I+VTE+PY V K++LIE+I+EL KRI + D+RDES+ E +RI Sbjct: 244 RAKVEITEMPNGKERILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMRI 303 Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371 V+ + R +++ +++ L+ ++ F NM + G VP+V+ L IL+ ++ H+REV Sbjct: 304 VIDIR-RDASASVILNNLYKLTSLQNSFGFNMLAIEKG-VPKVLSLKQILENYIEHQREV 361 Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQV 428 + RR+ F + + R IL+GL IA +IDEIIAIIR ++D+ K M+ RF L++ Q Sbjct: 362 ITRRTVFEKEKAEARAHILEGLRIALDHIDEIIAIIRGSKSDDEAKATMIERFDLSDRQS 421 Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488 AIL++RLR L LE +I++E LL E + +L ++ I E+ ++ + F Sbjct: 422 QAILDMRLRRLTGLEREKIENEYQELLKLIEDLTDILARPERVTEIIKNELADLNQRFGD 481 Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DL 540 +RRT E+ IT ++N G+I+ L ++ + Sbjct: 482 -----KRRTELLVGEVLSLEDEDLIEEEEIVIT--LTNNGYIKRLANNEFRAQRRGGRGV 534 Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573 + D +K + T D +L + +GK Y Sbjct: 535 QGMGIHNDDFVKNLVSCSTHDTLLFFTNNGKVY 567 >gi|148978903|ref|ZP_01815223.1| DNA gyrase, subunit A [Vibrionales bacterium SWAT-3] gi|145962101|gb|EDK27387.1| DNA gyrase, subunit A [Vibrionales bacterium SWAT-3] Length = 880 Score = 433 bits (1113), Expect = e-119, Method: Compositional matrix adjust. Identities = 275/725 (37%), Positives = 414/725 (57%), Gaps = 64/725 (8%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + V++ L YL YA+S I RA+PD+RDG KPVHRR++ AM+ +G D+ +KKSA Sbjct: 8 ITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSA 67 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG+IDGDSAAA RYTE RM Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVRM 127 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 ++A +L +D++ VD+ Y+ + P V P+K PNLL NG SGIAVGMAT+IP HN+ Sbjct: 128 AKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGASGIAVGMATNIPPHNL 187 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ + LALI+N EI+I++L++YI GPDFPT +I R+ IV++Y+ GRG +R++ Sbjct: 188 GEVVDGCLALINNEEITIDELMDYIPGPDFPTAALI-SGRKGIVDAYKTGRGKVYMRSKA 246 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFP 315 +E G I+VTEIPYQV K+RLIEKIAEL+ K++ + +RDES +D +RIV+ Sbjct: 247 DIEADKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIEC 306 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 K R ++++ +++ + ++T F +NM L+ G+ PQ+ L +LK ++ HRREV+ RR Sbjct: 307 K-RDAVGEVVLNNLYAQTQLQTTFGINMVALNNGQ-PQLFNLKDMLKCFVDHRREVVTRR 364 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR------------ 420 + F ++ R IL+ L +A NIDEII +IRN P K +V+R Sbjct: 365 TIFELKKARDRAHILEALSLALANIDEIIELIRNAPTPADAKAGLVARGWDLGNVASMLE 424 Query: 421 ----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458 + LTE Q AIL LRL L LE +I E LL E Sbjct: 425 RAGTDAARPDWLEDQYGIRDGQYFLTETQAQAILELRLHRLTGLEHEKILDEYKALLEEI 484 Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518 ++ +L S ++ I E+ V+EI+ RRT E++ A + +I +E Sbjct: 485 AELMHILASTERLMEVIREELEAVREIYGDE-----RRT---EITAAVHDIDMEELIAQE 536 Query: 519 PITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570 + V +SN G+++ + + SA K+ D ++ L A+T D IL ST G Sbjct: 537 DVVVTLSNAGYVKYQILSDYEAQRRGGKGKSATKMKDEDYIERLLVANTHDNILCFSTRG 596 Query: 571 KAYTLPAGNL-LSGR-GHGEAIQLLIDLNHNQDIVTAF-VYDSTCKLLVVSSKGNAFIVE 627 K Y L L L+ R G+ I ++ L + I V + + + + + G+ + + Sbjct: 597 KTYRLKVYQLPLASRTARGKPIVNILPLEEGERITAILPVSEFSNEKFIFMATGDGTVKK 656 Query: 628 ES-EIIANTR-KGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR- 683 S + AN R G + + ++ + V GD + + ++ K++ F+ D++ M R Sbjct: 657 TSLDQFANVRANGLIAVNLRDDDSLIGVDITNGDSDIMLFSKSGKVVRFNEDKVRAMGRT 716 Query: 684 GKGVR 688 GVR Sbjct: 717 ASGVR 721 >gi|185178715|ref|ZP_02964532.1| DNA gyrase, A subunit [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|188024419|ref|ZP_02997078.1| DNA gyrase, A subunit [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|188518713|ref|ZP_03004135.1| DNA gyrase, A subunit [Ureaplasma urealyticum serovar 11 str. ATCC 33695] gi|188524146|ref|ZP_03004216.1| DNA gyrase, A subunit [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|195867460|ref|ZP_03079464.1| DNA gyrase, A subunit [Ureaplasma urealyticum serovar 9 str. ATCC 33175] gi|198273444|ref|ZP_03205980.1| DNA gyrase, A subunit [Ureaplasma urealyticum serovar 4 str. ATCC 27816] gi|225551039|ref|ZP_03771985.1| DNA gyrase, A subunit [Ureaplasma urealyticum serovar 8 str. ATCC 27618] gi|184209314|gb|EDU06357.1| DNA gyrase, A subunit [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|188018704|gb|EDU56744.1| DNA gyrase, A subunit [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|188997709|gb|EDU66806.1| DNA gyrase, A subunit [Ureaplasma urealyticum serovar 11 str. ATCC 33695] gi|195659822|gb|EDX53202.1| DNA gyrase, A subunit [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|195660936|gb|EDX54189.1| DNA gyrase, A subunit [Ureaplasma urealyticum serovar 9 str. ATCC 33175] gi|198249964|gb|EDY74744.1| DNA gyrase, A subunit [Ureaplasma urealyticum serovar 4 str. ATCC 27816] gi|225378854|gb|EEH01219.1| DNA gyrase, A subunit [Ureaplasma urealyticum serovar 8 str. ATCC 27618] Length = 844 Score = 433 bits (1113), Expect = e-119, Method: Compositional matrix adjust. Identities = 265/698 (37%), Positives = 406/698 (58%), Gaps = 37/698 (5%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 +K S+ +E +L Y++S I RA+PD+RDGFKPVHRR + A E G+ +KKSA Sbjct: 25 IKEQSITKEVETSFLDYSMSVIVARALPDVRDGFKPVHRRALFAAFENGMTHDKPYKKSA 84 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R VG+VIGK HPHGDQ+VY ++VR+AQ F RY L+ G GNFG+IDGDSAAA RYTEAR+ Sbjct: 85 RWVGDVIGKYHPHGDQAVYQTIVRMAQEFSMRYLLVDGHGNFGSIDGDSAAAMRYTEARL 144 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 ++++ +L+ +D++ VDF Y+ + EP V PS FPNLL NGT+GIAVGMAT+IP HN+ Sbjct: 145 SKISYELLKYIDKETVDFVPNYDASEQEPSVLPSGFPNLLTNGTTGIAVGMATNIPPHNL 204 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+C+A A N +ISI +++E++ GPDFPTG I I+ + GRG +R+++ Sbjct: 205 TEVCQAIKAYAKNHDISIPEIMEHLKGPDFPTGAEIY-GDSGIINYFNTGRGSVTIRSKY 263 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFP 315 +E++G+G IVVTEIPY V K LIEKI EL+ K+I + D+RDES+ D +RIV+ Sbjct: 264 EIEDIGQGRVAIVVTEIPYMVNKVNLIEKIVELVTNKQIEGISDLRDESSRDGIRIVIEV 323 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 K R + P++L+ +F + ++T F +N N+ + VP V+ + ++K + H+ EVL RR Sbjct: 324 K-RDVIPEVLLNKLFKTTALQTNFSVN-NLALVNGVPMVLNIKEMIKYYFEHQIEVLVRR 381 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432 + F ++ R+ I++GL+IA NIDE+I II+ ++D +++RF LTE Q AIL Sbjct: 382 TKFDLRKAKERIHIVEGLVIAVNNIDEVIKIIKASGDDDIASKALIARFGLTELQTKAIL 441 Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492 +RLR+L L ++K E ++LL + ++ +L + +Q N I CE + + K D Sbjct: 442 EMRLRALTGLNIDKLKKEYEDLLLIIKDLEDILENYDRQVN-IICE--NLDYLIEKFGDE 498 Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSVDLSALH 544 R + S D + +I E I V +S RG+ + L + V + L Sbjct: 499 RRTEIMYGVSSHID----DEDLIPVEDIVVTMSKRGYFKRLPIDTYKNQRRGGVGVQGLK 554 Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQDI 602 E D ++ L A+T +L S G+ Y L + G + I + + + ++ I Sbjct: 555 TYEDDDVEKILVANTHTDLLFFSDLGRVYRLRGHEVPLGSRQSKGIPAINFLPIEKSESI 614 Query: 603 VTAFVYDS--TCKLLVVSSKG---NAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657 +T D+ L +SKG A + + I AN GK + + +K+ V++ Sbjct: 615 LTILPIDNYEQGSLFFTTSKGIIKRANLSDFESIRAN---GKIAITLKEGDKLFSVMQTL 671 Query: 658 G-DHVAVVGENRKLLIFSIDQIPEMSR----GKGVRLQ 690 G D V + N ++ F+ + EM R KG+ L+ Sbjct: 672 GNDEVFIGASNGNVIRFNENDAREMGRIATGVKGINLE 709 >gi|257888090|ref|ZP_05667743.1| DNA gyrase subunit A [Enterococcus faecium 1,141,733] gi|257824144|gb|EEV51076.1| DNA gyrase subunit A [Enterococcus faecium 1,141,733] Length = 823 Score = 433 bits (1113), Expect = e-119, Method: Compositional matrix adjust. Identities = 231/573 (40%), Positives = 360/573 (62%), Gaps = 22/573 (3%) Query: 13 VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72 + EN+ V+L +++ ++ YA+S I RA+PD+RDG KPVHRRI++ M+E+G+ A Sbjct: 5 IRENIHDVNLTSEMKDSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKAH 64 Query: 73 KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132 KKSARIVG+V+GK HPHGD ++Y+S+VR+AQPF RY L+ G GNFG++DGD AAA RYT Sbjct: 65 KKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRYMLVDGHGNFGSVDGDGAAAMRYT 124 Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192 EARM+++A +L+ ++++ VDF+ Y++ + EPVV P++FPNLL NGT+GIAVGMAT+IP Sbjct: 125 EARMSKIATEMLRDINKNTVDFQSNYDDTEKEPVVLPARFPNLLVNGTTGIAVGMATNIP 184 Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252 HN+ E+ A L+DNP+++ +L+E + GPDFPTGG+++ + I +Y G+G V Sbjct: 185 PHNLSEVVAAIDLLMDNPDVTTNELMEVLPGPDFPTGGLVM-GKSGIRRAYETGKGSITV 243 Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRI 311 RA+ + E+ G I+VTE+PY V K++LIE+I+EL KRI + D+RDES+ E +RI Sbjct: 244 RAKVEITEMPNGKERILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMRI 303 Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371 V+ + R +++ +++ L+ ++ F NM + G VP+V+ L IL+ ++ H+REV Sbjct: 304 VIDIR-RDASASVILNNLYKLTSLQNSFGFNMLAIEKG-VPKVLSLKQILENYIEHQREV 361 Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQV 428 + RR+ F + + R IL+GL IA +IDEIIAIIR ++D+ K M+ RF L++ Q Sbjct: 362 ITRRTVFEKEKAEARAHILEGLRIALDHIDEIIAIIRGSKSDDEAKATMIERFDLSDRQS 421 Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488 AIL++RLR L LE +I++E LL E + +L ++ I E+ ++ + F Sbjct: 422 QAILDMRLRRLTGLEREKIENEYQELLKLIEDLTDILARPERVTEIIKNELADLNQRFGD 481 Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DL 540 +RRT E+ IT ++N G+I+ L ++ + Sbjct: 482 -----KRRTELLVGEVLSLEDEDLIEEEEIVIT--LTNNGYIKRLANNEFRAQRRGGRGV 534 Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573 + D +K + T D +L + +GK Y Sbjct: 535 QGMGIHNDDFVKNLVSCSTHDTLLFFTNNGKVY 567 >gi|312149537|gb|ADQ29608.1| DNA gyrase, A subunit [Borrelia burgdorferi N40] Length = 810 Score = 433 bits (1113), Expect = e-119, Method: Compositional matrix adjust. Identities = 246/611 (40%), Positives = 380/611 (62%), Gaps = 35/611 (5%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 +E + V + ++ YL YA+S I RA+PD+RDG KPVHRRI+++M EMGL AFK Sbjct: 7 KEQILNVRIEDEIKTSYLNYAMSVIVSRALPDVRDGLKPVHRRILYSMYEMGLRSDKAFK 66 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 K+ RIVG+V+GK HPHGDQS+YD+LVRLAQ F RYP+I GQGNFG+IDGD AA RYTE Sbjct: 67 KAGRIVGDVLGKYHPHGDQSIYDALVRLAQDFSLRYPVIRGQGNFGSIDGDPPAAMRYTE 126 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 A+M ++ E I++ +D++ V+F+ Y++ SEP + PS FP LL NG+SGIAVGMAT++ Sbjct: 127 AKMEKITEYIVKDIDKETVNFKSNYDDSLSEPEIMPSSFPFLLVNGSSGIAVGMATNMAP 186 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN++EIC+A + ++DN SI LL+ + GPDFPT G IV + ++++++Y+ G+G +R Sbjct: 187 HNLREICDAIVYMLDNENASIFDLLKIVKGPDFPTFGEIVYN-DNLIKAYKTGKGSVVIR 245 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIV 312 AR+ +EE I+VTEIPY V KS L+ K+A L +++ L DIRDES E +RIV Sbjct: 246 ARYHIEERAEDRNAIIVTEIPYTVNKSALLMKVALLAKEEKLEGLLDIRDESDREGIRIV 305 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 L K R DP ++M ++ ++ + F +N N+ + +P+ + L+ +L E++ HR+ ++ Sbjct: 306 LEVK-RGFDPHVIMNLLYEYTEFKKHFSIN-NLALVNGIPKQLNLEELLFEFIEHRKNII 363 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVD 429 RR F ++ + +L+GL IA NIDEII II++ K +VS F L+E Q + Sbjct: 364 ERRIEFDLRKAKEKAHVLEGLNIALNNIDEIIKIIKSSKLAKDAKERLVSNFGLSEIQAN 423 Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAE-KEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488 ++L++RL+ L LE ++++ EL+ LL+ K+ D LLN +R + I + Sbjct: 424 SVLDMRLQKLTALEIFKLEEELNILLSLIKDYEDILLNP-----------VRIINIIREE 472 Query: 489 STDLG-----RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD---- 539 + +LG RRT K ++ M +KE I V+++ +G+++ L + Sbjct: 473 TINLGLKFGDERRTKIIYDEEVLKTSMSDLM-QKENIVVMLTKKGFLKRLSQNEYKLQGT 531 Query: 540 ----LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLL 593 LS+ +GD + IAL +T D + ++S +GK Y + A + S G+ I L Sbjct: 532 GGKGLSSFDLNDGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRASKGQNISEL 591 Query: 594 IDLNHNQDIVT 604 I+L ++I+T Sbjct: 592 INLGDQEEILT 602 >gi|294619750|ref|ZP_06699155.1| DNA gyrase, A subunit [Enterococcus faecium E1679] gi|291594020|gb|EFF25489.1| DNA gyrase, A subunit [Enterococcus faecium E1679] Length = 823 Score = 433 bits (1113), Expect = e-119, Method: Compositional matrix adjust. Identities = 231/573 (40%), Positives = 363/573 (63%), Gaps = 22/573 (3%) Query: 13 VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72 + EN+ V+L +++ ++ YA+S I RA+PD+RDG KPVHRRI++ M+E+G+ A Sbjct: 5 IRENIHDVNLTSEMKDSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKAH 64 Query: 73 KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132 KKSARIVG+V+GK HPHGD ++Y S+VR+AQPF RY L+ G GNFG++DGD AAA RYT Sbjct: 65 KKSARIVGDVMGKYHPHGDSAIYKSMVRMAQPFSYRYMLVDGHGNFGSVDGDGAAAMRYT 124 Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192 EARM+++A +L+ ++++ VDF+ Y++ + EPVV P++FPNLL NGT+GIAVGMAT+IP Sbjct: 125 EARMSKIATEMLRDINKNTVDFQSNYDDTEKEPVVLPARFPNLLVNGTTGIAVGMATNIP 184 Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252 HN+ E+ A L+DNP+++ +L+E + GPDFPTGG+++ + I +Y G+G V Sbjct: 185 PHNLSEVVAAIDLLMDNPDVTTNELMEVLPGPDFPTGGLVM-GKSGIRRAYETGKGSITV 243 Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRI 311 RA+ + E+ G I+VTE+PY V K++LIE+I+EL KRI + D+RDES+ E +RI Sbjct: 244 RAKVEITEMPNGKERIIVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMRI 303 Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371 V+ + R +++ +++ L+ ++ F NM + G VP+V+ L IL+ ++ H+REV Sbjct: 304 VIDIR-RDASASVILNNLYKLTSLQNSFGFNMLAIEKG-VPKVLSLKQILENYIEHQREV 361 Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQV 428 + RR+ F + + R IL+GL IA +IDEIIAIIR ++D+ K M+ RF L++ Q Sbjct: 362 ITRRTVFEKEKAEARAHILEGLRIALDHIDEIIAIIRGSKSDDEAKATMIERFDLSDRQS 421 Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488 AIL++RLR L LE +I++E LL E + +L ++ I E+ ++ + F Sbjct: 422 QAILDMRLRRLTGLEREKIENEYQELLKLIEDLTDILARPERVTEIIKNELADLNQRF-- 479 Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DL 540 G +R T V + + E+E + + ++N G+I+ L ++ + Sbjct: 480 ----GDKRRTELLVGEVLSLEDEDLIEEEEIV-ITLTNNGYIKRLANNEFRAQRRGGRGV 534 Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573 + D +K + T D +L + +GK Y Sbjct: 535 QGMGIHNDDFVKNLVSCSTHDTLLFFTNNGKVY 567 >gi|329925102|ref|ZP_08280046.1| DNA gyrase, A subunit [Paenibacillus sp. HGF5] gi|328940221|gb|EGG36553.1| DNA gyrase, A subunit [Paenibacillus sp. HGF5] Length = 834 Score = 432 bits (1112), Expect = e-119, Method: Compositional matrix adjust. Identities = 248/648 (38%), Positives = 392/648 (60%), Gaps = 35/648 (5%) Query: 12 LVEENVKAVSLR---FALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68 + EEN + R + E ++ YA+S I RA+PD+RDG KPVHRRI++AMSE+G+ Sbjct: 1 MAEENFSQIKDRDIGTEMRESFMDYAMSIIVSRALPDVRDGMKPVHRRILYAMSELGMAP 60 Query: 69 GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128 KKSARIVGEVIGK HPHGD +VY+S+VR+AQ F RY L+ G GNFG+IDGD AAA Sbjct: 61 DKPHKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFSMRYMLVDGHGNFGSIDGDMAAA 120 Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188 RYTEAR++++A +L+ ++++ +DF Y+ E+ EPVV P+++PNLL NG SGIAVGMA Sbjct: 121 MRYTEARLSKIAMEMLRDINKETIDFAPNYDGEEQEPVVLPARYPNLLVNGVSGIAVGMA 180 Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248 T+IP HN+ E+ + A+I NP+I+ +L+EYI GPDFPT G I+ RE I ++YR GRG Sbjct: 181 TNIPPHNLGEVIDGVQAMIRNPDITPMELMEYIQGPDFPTAGYIL-GREGIRQAYRTGRG 239 Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308 +RA+ +EE IVV EIPYQV K+RL+EKIAEL+ KRI + D+RDES + Sbjct: 240 SVTMRAKATIEE-NNNKARIVVHEIPYQVNKARLVEKIAELVREKRIDGITDLRDESDRN 298 Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368 ++ R ++P++++ +++ + M++ F +NM + + P+++ L +L +L H+ Sbjct: 299 GMRIVIELRRDVNPNVVLNNLYKHTAMQSNFGINMLAI-VNNEPKILNLRDVLFHYLEHQ 357 Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTE 425 V+ RR+ F ++ + R IL+GL +A ++DE+IA+IR + + ++ RF L+ Sbjct: 358 VTVIRRRTEFELKKAEARAHILEGLRVALDHLDEVIALIRASQTTEAAREGLMERFGLSH 417 Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485 Q AIL++RL+ L LE +I++E LLA ++ +L + I E++E+KE Sbjct: 418 EQAQAILDMRLQRLTGLEREKIENEYQELLARIAELREILANEHLVLQIINDELQEIKER 477 Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------- 538 F+ RRT E++ + + L + +I +E + + I++ G+I+ L +++ Sbjct: 478 FADE-----RRT---EITVGEDSILDEDLIPREEVIITITHTGYIKRLPANTYRSQKRGG 529 Query: 539 -DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLID 595 + + K D ++ ++ ++ + GKAY L A + LS G I LI Sbjct: 530 RGVVGMDTKSEDFVEHLFVTNSHHYLMFFTDKGKAYRLKAYEIPELSRTARGTPIINLIQ 589 Query: 596 LNHNQDI---VTAFVYDSTCKLLVVSSKGNAFIVEES--EIIANTRKG 638 + + I + +DS L + +G +V+++ E N RKG Sbjct: 590 IEQGESINAVIPVENFDSDNYLFFATRQG---VVKKTPLEDYVNIRKG 634 >gi|314948161|ref|ZP_07851557.1| DNA gyrase, A subunit [Enterococcus faecium TX0082] gi|313645415|gb|EFS09995.1| DNA gyrase, A subunit [Enterococcus faecium TX0082] Length = 823 Score = 432 bits (1112), Expect = e-119, Method: Compositional matrix adjust. Identities = 231/573 (40%), Positives = 363/573 (63%), Gaps = 22/573 (3%) Query: 13 VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72 + EN+ V+L +++ ++ YA+S I RA+PD+RDG KPVHRRI++ M+E+G+ A Sbjct: 5 IRENIHDVNLTSEMKDSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKAH 64 Query: 73 KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132 KKSARIVG+V+GK HPHGD ++Y S+VR+AQPF RY L+ G GNFG++DGD AAA RYT Sbjct: 65 KKSARIVGDVMGKYHPHGDSAIYKSMVRMAQPFSYRYMLVDGHGNFGSVDGDGAAAMRYT 124 Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192 EARM+++A +L+ ++++ VDF+ Y++ + EPVV P++FPNLL NGT+GIAVGMAT+IP Sbjct: 125 EARMSKIATEMLRDINKNTVDFQSNYDDTEKEPVVLPARFPNLLVNGTTGIAVGMATNIP 184 Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252 HN+ E+ A L+DNP+++ +L+E + GPDFPTGG+++ + I +Y G+G V Sbjct: 185 PHNLSEVVAAIDLLMDNPDVTTNELMEVLPGPDFPTGGLVM-GKSGIRRAYETGKGSITV 243 Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRI 311 RA+ + E+ G I+VTE+PY V K++LIE+I+EL KRI + D+RDES+ E +RI Sbjct: 244 RAKVEITEMPNGKERIIVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMRI 303 Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371 V+ + R +++ +++ L+ ++ F NM + G VP+V+ L IL+ ++ H+REV Sbjct: 304 VIDIR-RDASASVILNNLYKLTSLQNSFGFNMLAIEKG-VPKVLSLKQILENYIEHQREV 361 Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQV 428 + RR+ F + + R IL+GL IA +IDEIIAIIR ++D+ K M+ RF L++ Q Sbjct: 362 ITRRTVFEKEKAEARAHILEGLRIALDHIDEIIAIIRGSKSDDEAKATMIERFDLSDRQS 421 Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488 AIL++RLR L LE +I++E LL E + +L ++ I E+ ++ + F Sbjct: 422 QAILDMRLRRLTGLEREKIENEYQELLKLIEDLTDILARPERVTEIIKNELADLNQRF-- 479 Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DL 540 G +R T V + + E+E + + ++N G+I+ L ++ + Sbjct: 480 ----GDKRRTELLVGEVLSLEDEDLIEEEEIV-ITLTNNGYIKRLANNEFRAQRRGGRGV 534 Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573 + D +K + T D +L + +GK Y Sbjct: 535 QGMGIHNDDFVKNLVSCSTHDTLLFFTNNGKVY 567 >gi|297582345|ref|YP_003698125.1| DNA gyrase subunit A [Bacillus selenitireducens MLS10] gi|297140802|gb|ADH97559.1| DNA gyrase, A subunit [Bacillus selenitireducens MLS10] Length = 835 Score = 432 bits (1112), Expect = e-119, Method: Compositional matrix adjust. Identities = 257/702 (36%), Positives = 414/702 (58%), Gaps = 38/702 (5%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 + V +++ + ++ YA+S I RA+PD+RDG KPVHRRI++AM+E+G+ A+K Sbjct: 6 QSRVTEINISQEMRTSFMDYAMSVIVSRALPDVRDGMKPVHRRILYAMNELGITSDKAYK 65 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSARIVGEVIGK HPHGD +VY+++VR+AQ F R L+ G GNFG++DGDSAAA RYTE Sbjct: 66 KSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSYRNMLVDGHGNFGSVDGDSAAAMRYTE 125 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 ARM++++ +L+ +++D +D++D Y+ + EPVV P++FPNLL NG SGIAVGMAT+IP Sbjct: 126 ARMSKISMELLRDINKDTIDYQDNYDGSEREPVVLPARFPNLLVNGASGIAVGMATNIPP 185 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E+ + LAL NPEI+IE+L+E+I GPDFPTG IV I +Y G+G +R Sbjct: 186 HNLSEVIDGVLALSKNPEITIEQLMEHISGPDFPTGAEIV-GISGIRRAYETGKGSIMIR 244 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313 + +E+ W I+V E+PYQV K+RLIEKIAEL+ K+I + D+RDES ++ Sbjct: 245 SNARIEDHNGKPW-IIVDELPYQVNKARLIEKIAELVRDKKIDGITDLRDESDRTGMRIV 303 Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373 R ++ ++L+ +++ + ++T F +N L GR PQV+ L L +L H+R V+ Sbjct: 304 IELRRDVNANVLLNNLYKQTALQTSFGINTLALVNGR-PQVLNLKETLVHYLDHQRVVIR 362 Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDA 430 RR+ F ++ + R IL+GL +A ++DE+IA+IR D + ++ +F L+ +Q A Sbjct: 363 RRTEFELRKAEARAHILEGLRVALDHLDEVIALIRGSQTTDIARDGLMEQFDLSHDQAQA 422 Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490 IL++RL+ L LE +I++E + L+A ++ ++L ++ I E+ E+++ F Sbjct: 423 ILDMRLQRLTGLERDKIENEYNELMARIAELKAILADDEKVLEIIREELLEIRDRFG--- 479 Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSA 542 D R TF E S D + +I ++ + + +S+ G+I RS K + Sbjct: 480 DDRRTTITFGEDSMED-----EDLIPRQNVVITVSHHGYIKRIPVSTYRSQKRGGRGVQG 534 Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602 + + D ++ ++ D +L + GK Y + + + + I ++ L +D Sbjct: 535 MGTHDEDFVRHLFVTNSHDHMLFFTNKGKVYRMKGYEVPEQKRTSKGIPIINLLQIEKDE 594 Query: 603 VTAFV-----YDSTCKLLVVSSKGNAFIVEESEIIA--NTRKGKTF-LKVSSEEKMKLVV 654 + V +D+ L+ ++ G + + +E+ A N RKG F +K+ +++ V Sbjct: 595 YISTVIPISEFDANHSLIFMTKYG---VSKRTELDAFKNIRKGGLFAIKLREGDELHGVR 651 Query: 655 KVTGDHVAVVGENRKLLI-FSIDQIPEMSRG----KGVRLQS 691 G VVG + + I FS + M R KG+RLQS Sbjct: 652 LTDGSKELVVGTKKGMSIRFSETDVRLMGRTATGVKGLRLQS 693 >gi|118475784|ref|YP_892935.1| DNA gyrase subunit A [Bacillus thuringiensis str. Al Hakam] gi|118415009|gb|ABK83428.1| DNA gyrase subunit A [Bacillus thuringiensis str. Al Hakam] Length = 824 Score = 432 bits (1112), Expect = e-119, Method: Compositional matrix adjust. Identities = 253/704 (35%), Positives = 416/704 (59%), Gaps = 50/704 (7%) Query: 9 SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68 S+ + ++ +++ + +L YA+S I RA+PD+RDG KPVHRR+++AM+++G+ Sbjct: 3 SDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 62 Query: 69 GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128 A+KKSARIVGEVIGK HPHGD +VY+++VR+AQ F QRY L+ G GNFG++DGDSAAA Sbjct: 63 DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 122 Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188 RYTEARM++++ +++ + ++ +D++D Y+ + EP+V P++FPNLL NGT+GIAVGMA Sbjct: 123 MRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMA 182 Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248 T+IP H + E+ + LAL NP+I+I +L+E I GPDFPT G+I+ R I +Y GRG Sbjct: 183 TNIPPHQLGEVIDGVLALSHNPDITIAELMECIPGPDFPTAGLIL-GRSGIRRAYETGRG 241 Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308 +RA+ +EE G I+VTE+PYQV K+RLIEKIAEL+ K+I + D+RDES + Sbjct: 242 SIILRAKVEIEEKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRN 301 Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368 ++ R + ++L+ +++ + ++T F +NM L G PQV+ L L +L H+ Sbjct: 302 GMRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGE-PQVLNLKQNLYHYLEHQ 360 Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTE 425 + V+ RR+++ ++ + R IL+GL IA ++DE+I +IR+ K ++ RF L+E Sbjct: 361 KVVIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTAEIAKQGLMERFGLSE 420 Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485 Q AIL++RL+ L LE +I+ E +L+ ++ ++L ++ I E+ EVKE Sbjct: 421 KQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIAELKAILADEEKVLEIIREELTEVKER 480 Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSLKSHSVD----- 539 F+ +RRT E++ +++ + +I ++ I + +++ G+I+ L + + Sbjct: 481 FND-----KRRT---EITIGGMESIEDEDLIPEQNIAITLTHNGYIKRLPASTYKTQNRG 532 Query: 540 ---LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLL 581 + + + D ++ L T D IL + GK Y +P NLL Sbjct: 533 GRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEIPEYSRTAKGIPIINLL 592 Query: 582 SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR-KGKT 640 G GE I +I + D F++ +T + + + ++F AN R G Sbjct: 593 -GVDKGEWINAIIPIREFGD--DEFLFFTTKQGISKRTPLSSF--------ANIRTNGLI 641 Query: 641 FLKVSSEEKMKLVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSR 683 + + E+++ V +GD +VG + +LI F+ + M R Sbjct: 642 AISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGR 685 >gi|261403884|ref|YP_003240125.1| DNA gyrase subunit A [Paenibacillus sp. Y412MC10] gi|261280347|gb|ACX62318.1| DNA gyrase, A subunit [Paenibacillus sp. Y412MC10] Length = 834 Score = 432 bits (1112), Expect = e-119, Method: Compositional matrix adjust. Identities = 248/648 (38%), Positives = 392/648 (60%), Gaps = 35/648 (5%) Query: 12 LVEENVKAVSLR---FALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68 + EEN + R + E ++ YA+S I RA+PD+RDG KPVHRRI++AMSE+G+ Sbjct: 1 MAEENFSQIKDRDIGTEMRESFMDYAMSIIVSRALPDVRDGMKPVHRRILYAMSELGMAP 60 Query: 69 GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128 KKSARIVGEVIGK HPHGD +VY+S+VR+AQ F RY L+ G GNFG+IDGD AAA Sbjct: 61 DKPHKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFSMRYMLVDGHGNFGSIDGDMAAA 120 Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188 RYTEAR++++A +L+ ++++ +DF Y+ E+ EPVV P+++PNLL NG SGIAVGMA Sbjct: 121 MRYTEARLSKIAMEMLRDINKETIDFAPNYDGEEQEPVVLPARYPNLLVNGVSGIAVGMA 180 Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248 T+IP HN+ E+ + A+I NP+I+ +L+EYI GPDFPT G I+ RE I ++YR GRG Sbjct: 181 TNIPPHNLGEVIDGVQAMIRNPDITPMELMEYIQGPDFPTAGYIL-GREGIRQAYRTGRG 239 Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308 +RA+ +EE IVV EIPYQV K+RL+EKIAEL+ KRI + D+RDES + Sbjct: 240 SVTMRAKATIEE-NNNKARIVVHEIPYQVNKARLVEKIAELVREKRIDGITDLRDESDRN 298 Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368 ++ R ++P++++ +++ + M++ F +NM + + P+++ L +L +L H+ Sbjct: 299 GMRIVIELRRDVNPNVVLNNLYKHTAMQSNFGINMLAI-VNNEPKILNLRDVLFHYLEHQ 357 Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTE 425 V+ RR+ F ++ + R IL+GL +A ++DE+IA+IR + + ++ RF L+ Sbjct: 358 VTVIRRRTEFELKKAEARAHILEGLRVALDHLDEVIALIRASQTTEAAREGLMERFGLSH 417 Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485 Q AIL++RL+ L LE +I++E LLA ++ +L + I E++E+KE Sbjct: 418 EQAQAILDMRLQRLTGLEREKIENEYQELLARIAELREILANEHLVLQIINDELQEIKER 477 Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------- 538 F+ RRT E++ + + L + +I +E + + I++ G+I+ L +++ Sbjct: 478 FADE-----RRT---EITVGEDSILDEDLIPREEVIITITHTGYIKRLPANTYRSQKRGG 529 Query: 539 -DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLID 595 + + K D ++ ++ ++ + GKAY L A + LS G I LI Sbjct: 530 RGVVGMDTKSEDFVEHLFVTNSHHYLMFFTDKGKAYRLKAYEIPELSRTARGTPIINLIQ 589 Query: 596 LNHNQDI---VTAFVYDSTCKLLVVSSKGNAFIVEES--EIIANTRKG 638 + + I + +DS L + +G +V+++ E N RKG Sbjct: 590 IEQGESINAVIPVENFDSDNYLFFATRQG---VVKKTPLEDYVNIRKG 634 >gi|314940126|ref|ZP_07847306.1| DNA gyrase, A subunit [Enterococcus faecium TX0133a04] gi|314943043|ref|ZP_07849847.1| DNA gyrase, A subunit [Enterococcus faecium TX0133C] gi|314953425|ref|ZP_07856343.1| DNA gyrase, A subunit [Enterococcus faecium TX0133A] gi|314993836|ref|ZP_07859172.1| DNA gyrase, A subunit [Enterococcus faecium TX0133B] gi|314998139|ref|ZP_07863021.1| DNA gyrase, A subunit [Enterococcus faecium TX0133a01] gi|313587851|gb|EFR66696.1| DNA gyrase, A subunit [Enterococcus faecium TX0133a01] gi|313591727|gb|EFR70572.1| DNA gyrase, A subunit [Enterococcus faecium TX0133B] gi|313594528|gb|EFR73373.1| DNA gyrase, A subunit [Enterococcus faecium TX0133A] gi|313598243|gb|EFR77088.1| DNA gyrase, A subunit [Enterococcus faecium TX0133C] gi|313640631|gb|EFS05211.1| DNA gyrase, A subunit [Enterococcus faecium TX0133a04] Length = 823 Score = 432 bits (1112), Expect = e-119, Method: Compositional matrix adjust. Identities = 231/573 (40%), Positives = 360/573 (62%), Gaps = 22/573 (3%) Query: 13 VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72 + EN+ V+L +++ ++ YA+S I RA+PD+RDG KPVHRRI++ M+E+G+ A Sbjct: 5 IRENIHDVNLTSEMKDSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKAH 64 Query: 73 KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132 KKSARIVG+V+GK HPHGD ++Y+S+VR+AQPF RY L+ G GNFG++DGD AAA RYT Sbjct: 65 KKSARIVGDVMGKYHPHGDIAIYESMVRMAQPFSYRYMLVDGHGNFGSVDGDGAAAMRYT 124 Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192 EARM+++A +L+ ++++ VDF+ Y++ + EPVV P++FPNLL NGT+GIAVGMAT+IP Sbjct: 125 EARMSKIATEMLRDINKNTVDFQSNYDDTEKEPVVLPARFPNLLVNGTTGIAVGMATNIP 184 Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252 HN+ E+ A L+DNP+++ +L+E + GPDFPTGG+++ + I +Y G+G V Sbjct: 185 PHNLSEVVAAIDLLMDNPDVTTNELMEVLPGPDFPTGGLVM-GKSGIRRAYETGKGSITV 243 Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRI 311 RA+ + E+ G I+VTE+PY V K++LIE+I+EL KRI + D+RDES+ E +RI Sbjct: 244 RAKVEITEMPNGKERIIVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMRI 303 Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371 V+ + R +++ +++ L+ ++ F NM + G VP+V+ L IL+ ++ H+REV Sbjct: 304 VIDIR-RDASASVILNNLYKLTSLQNSFGFNMLAIEKG-VPKVLSLKQILENYIEHQREV 361 Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQV 428 + RR+ F + + R IL+GL IA +IDEIIAIIR ++D+ K M+ RF L++ Q Sbjct: 362 ITRRTVFEKEKAEARAHILEGLRIALDHIDEIIAIIRGSKSDDEAKATMIERFDLSDRQS 421 Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488 AIL++RLR L LE +I++E LL E + +L ++ I E+ ++ + F Sbjct: 422 QAILDMRLRRLTGLEREKIENEYQELLKLIEDLTDILARPERVTEIIKNELADLNQRFGD 481 Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DL 540 +RRT E+ IT ++N G+I+ L ++ + Sbjct: 482 -----KRRTELLVGEVLSLEDEDLIEEEEIVIT--LTNNGYIKRLANNEFRAQRRGGRGV 534 Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573 + D +K + T D +L + +GK Y Sbjct: 535 QGMGIHNDDFVKNLVSCSTHDTLLFFTNNGKVY 567 >gi|30260201|ref|NP_842578.1| DNA gyrase subunit A [Bacillus anthracis str. Ames] gi|42779087|ref|NP_976334.1| DNA gyrase subunit A [Bacillus cereus ATCC 10987] gi|47525260|ref|YP_016609.1| DNA gyrase subunit A [Bacillus anthracis str. 'Ames Ancestor'] gi|49183045|ref|YP_026297.1| DNA gyrase subunit A [Bacillus anthracis str. Sterne] gi|49476687|ref|YP_034366.1| DNA gyrase subunit A [Bacillus thuringiensis serovar konkukian str. 97-27] gi|65317474|ref|ZP_00390433.1| COG0188: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit [Bacillus anthracis str. A2012] gi|165873036|ref|ZP_02217657.1| DNA gyrase, A subunit [Bacillus anthracis str. A0488] gi|167641756|ref|ZP_02399999.1| DNA gyrase, A subunit [Bacillus anthracis str. A0193] gi|170689477|ref|ZP_02880667.1| DNA gyrase, A subunit [Bacillus anthracis str. A0465] gi|170707601|ref|ZP_02898054.1| DNA gyrase, A subunit [Bacillus anthracis str. A0389] gi|177655272|ref|ZP_02936826.1| DNA gyrase, A subunit [Bacillus anthracis str. A0174] gi|190569281|ref|ZP_03022175.1| DNA gyrase, A subunit [Bacillus anthracis Tsiankovskii-I] gi|196041934|ref|ZP_03109221.1| DNA gyrase, A subunit [Bacillus cereus NVH0597-99] gi|196045484|ref|ZP_03112715.1| DNA gyrase, A subunit [Bacillus cereus 03BB108] gi|227812684|ref|YP_002812693.1| DNA gyrase, A subunit [Bacillus anthracis str. CDC 684] gi|228918106|ref|ZP_04081634.1| DNA gyrase subunit A [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|229187723|ref|ZP_04314859.1| DNA gyrase subunit A [Bacillus cereus BGSC 6E1] gi|229199682|ref|ZP_04326325.1| DNA gyrase subunit A [Bacillus cereus m1293] gi|229604222|ref|YP_002864663.1| DNA gyrase, A subunit [Bacillus anthracis str. A0248] gi|254687065|ref|ZP_05150923.1| DNA gyrase subunit A [Bacillus anthracis str. CNEVA-9066] gi|254724152|ref|ZP_05185937.1| DNA gyrase subunit A [Bacillus anthracis str. A1055] gi|254735168|ref|ZP_05192878.1| DNA gyrase subunit A [Bacillus anthracis str. Western North America USA6153] gi|254755968|ref|ZP_05208000.1| DNA gyrase subunit A [Bacillus anthracis str. Vollum] gi|254761352|ref|ZP_05213374.1| DNA gyrase subunit A [Bacillus anthracis str. Australia 94] gi|301051747|ref|YP_003789958.1| DNA gyrase subunit A [Bacillus anthracis CI] gi|30253522|gb|AAP24064.1| DNA gyrase, A subunit [Bacillus anthracis str. Ames] gi|42735002|gb|AAS38942.1| DNA gyrase, A subunit [Bacillus cereus ATCC 10987] gi|47500408|gb|AAT29084.1| DNA gyrase, A subunit [Bacillus anthracis str. 'Ames Ancestor'] gi|49176972|gb|AAT52348.1| DNA gyrase, A subunit [Bacillus anthracis str. Sterne] gi|49328243|gb|AAT58889.1| DNA topoisomerase II, ATP-hydrolyzing (DNA gyrase, subunit A) [Bacillus thuringiensis serovar konkukian str. 97-27] gi|164711248|gb|EDR16804.1| DNA gyrase, A subunit [Bacillus anthracis str. A0488] gi|167510310|gb|EDR85713.1| DNA gyrase, A subunit [Bacillus anthracis str. A0193] gi|170127597|gb|EDS96471.1| DNA gyrase, A subunit [Bacillus anthracis str. A0389] gi|170666579|gb|EDT17352.1| DNA gyrase, A subunit [Bacillus anthracis str. A0465] gi|172080199|gb|EDT65291.1| DNA gyrase, A subunit [Bacillus anthracis str. A0174] gi|190559588|gb|EDV13579.1| DNA gyrase, A subunit [Bacillus anthracis Tsiankovskii-I] gi|196023691|gb|EDX62367.1| DNA gyrase, A subunit [Bacillus cereus 03BB108] gi|196027189|gb|EDX65809.1| DNA gyrase, A subunit [Bacillus cereus NVH0597-99] gi|227006418|gb|ACP16161.1| DNA gyrase, A subunit [Bacillus anthracis str. CDC 684] gi|228583777|gb|EEK41952.1| DNA gyrase subunit A [Bacillus cereus m1293] gi|228595791|gb|EEK53475.1| DNA gyrase subunit A [Bacillus cereus BGSC 6E1] gi|228841586|gb|EEM86702.1| DNA gyrase subunit A [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|229268630|gb|ACQ50267.1| DNA gyrase, A subunit [Bacillus anthracis str. A0248] gi|300373916|gb|ADK02820.1| DNA gyrase subunit A [Bacillus cereus biovar anthracis str. CI] Length = 823 Score = 432 bits (1112), Expect = e-119, Method: Compositional matrix adjust. Identities = 253/704 (35%), Positives = 416/704 (59%), Gaps = 50/704 (7%) Query: 9 SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68 S+ + ++ +++ + +L YA+S I RA+PD+RDG KPVHRR+++AM+++G+ Sbjct: 2 SDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 61 Query: 69 GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128 A+KKSARIVGEVIGK HPHGD +VY+++VR+AQ F QRY L+ G GNFG++DGDSAAA Sbjct: 62 DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 121 Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188 RYTEARM++++ +++ + ++ +D++D Y+ + EP+V P++FPNLL NGT+GIAVGMA Sbjct: 122 MRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMA 181 Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248 T+IP H + E+ + LAL NP+I+I +L+E I GPDFPT G+I+ R I +Y GRG Sbjct: 182 TNIPPHQLGEVIDGVLALSHNPDITIAELMECIPGPDFPTAGLIL-GRSGIRRAYETGRG 240 Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308 +RA+ +EE G I+VTE+PYQV K+RLIEKIAEL+ K+I + D+RDES + Sbjct: 241 SIILRAKVEIEEKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRN 300 Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368 ++ R + ++L+ +++ + ++T F +NM L G PQV+ L L +L H+ Sbjct: 301 GMRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGE-PQVLNLKQNLYHYLEHQ 359 Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTE 425 + V+ RR+++ ++ + R IL+GL IA ++DE+I +IR+ K ++ RF L+E Sbjct: 360 KVVIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTAEIAKQGLMERFGLSE 419 Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485 Q AIL++RL+ L LE +I+ E +L+ ++ ++L ++ I E+ EVKE Sbjct: 420 KQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIAELKAILADEEKVLEIIREELTEVKER 479 Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSLKSHSVD----- 539 F+ +RRT E++ +++ + +I ++ I + +++ G+I+ L + + Sbjct: 480 FND-----KRRT---EITIGGMESIEDEDLIPEQNIAITLTHNGYIKRLPASTYKTQNRG 531 Query: 540 ---LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLL 581 + + + D ++ L T D IL + GK Y +P NLL Sbjct: 532 GRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEIPEYSRTAKGIPIINLL 591 Query: 582 SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR-KGKT 640 G GE I +I + D F++ +T + + + ++F AN R G Sbjct: 592 -GVDKGEWINAIIPIREFGD--DEFLFFTTKQGISKRTPLSSF--------ANIRTNGLI 640 Query: 641 FLKVSSEEKMKLVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSR 683 + + E+++ V +GD +VG + +LI F+ + M R Sbjct: 641 AISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGR 684 >gi|15594780|ref|NP_212569.1| DNA gyrase, subunit A (gyrA) [Borrelia burgdorferi B31] gi|216264751|ref|ZP_03436743.1| DNA gyrase, A subunit [Borrelia burgdorferi 156a] gi|218249915|ref|YP_002374946.1| DNA gyrase, A subunit [Borrelia burgdorferi ZS7] gi|223888797|ref|ZP_03623388.1| DNA gyrase, A subunit [Borrelia burgdorferi 64b] gi|226321744|ref|ZP_03797270.1| DNA gyrase, A subunit [Borrelia burgdorferi Bol26] gi|3913797|sp|O51396|GYRA_BORBU RecName: Full=DNA gyrase subunit A gi|2688338|gb|AAC66803.1| DNA gyrase, subunit A (gyrA) [Borrelia burgdorferi B31] gi|215981224|gb|EEC22031.1| DNA gyrase, A subunit [Borrelia burgdorferi 156a] gi|218165103|gb|ACK75164.1| DNA gyrase, A subunit [Borrelia burgdorferi ZS7] gi|223885613|gb|EEF56712.1| DNA gyrase, A subunit [Borrelia burgdorferi 64b] gi|226232933|gb|EEH31686.1| DNA gyrase, A subunit [Borrelia burgdorferi Bol26] gi|312147746|gb|ADQ30405.1| DNA gyrase, A subunit [Borrelia burgdorferi JD1] Length = 810 Score = 432 bits (1112), Expect = e-119, Method: Compositional matrix adjust. Identities = 245/611 (40%), Positives = 380/611 (62%), Gaps = 35/611 (5%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 +E + V + ++ YL YA+S I RA+PD+RDG KPVHRRI+++M EMGL AFK Sbjct: 7 KEQILNVRIEDEIKTSYLNYAMSVIVSRALPDVRDGLKPVHRRILYSMYEMGLRSDKAFK 66 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 K+ RIVG+V+GK HPHGDQS+YD+LVRLAQ F RYP+I GQGNFG+IDGD AA RYTE Sbjct: 67 KAGRIVGDVLGKYHPHGDQSIYDALVRLAQDFSLRYPVIRGQGNFGSIDGDPPAAMRYTE 126 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 A+M ++ E I++ +D++ V+F+ Y++ SEP + PS FP LL NG+SGIAVGMAT++ Sbjct: 127 AKMEKITEYIVKDIDKETVNFKSNYDDSLSEPEIMPSSFPFLLVNGSSGIAVGMATNMAP 186 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN++EIC+A + ++DN SI LL+ + GPDFPT G IV + ++++++Y+ G+G +R Sbjct: 187 HNLREICDAIVYMLDNENASIFDLLKIVKGPDFPTFGEIVYN-DNLIKAYKTGKGSVVIR 245 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIV 312 AR+ +EE I+VTEIPY V KS L+ K+A L +++ L DIRDES E +RIV Sbjct: 246 ARYHIEERAEDRNAIIVTEIPYTVNKSALLMKVALLAKEEKLEGLLDIRDESDREGIRIV 305 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 L K R DP ++M ++ ++ + F +N N+ + +P+ + L+ +L E++ HR+ ++ Sbjct: 306 LEVK-RGFDPHVIMNLLYEYTEFKKHFSIN-NLALVNGIPKQLNLEELLFEFIEHRKNII 363 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVD 429 RR F ++ + +L+GL IA NIDE+I II++ K +VS F L+E Q + Sbjct: 364 ERRIEFDLRKAKEKAHVLEGLNIALNNIDEVIKIIKSSKLAKDARERLVSNFGLSEIQAN 423 Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAE-KEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488 ++L++RL+ L LE ++++ EL+ LL+ K+ D LLN +R + I + Sbjct: 424 SVLDMRLQKLTALEIFKLEEELNILLSLIKDYEDILLNP-----------VRIINIIREE 472 Query: 489 STDLG-----RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD---- 539 + +LG RRT K ++ M +KE I V+++ +G+++ L + Sbjct: 473 TINLGLKFGDERRTKIIYDEEVLKTSMSDLM-QKENIVVMLTKKGFLKRLSQNEYKLQGT 531 Query: 540 ----LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLL 593 LS+ +GD + IAL +T D + ++S +GK Y + A + S G+ I L Sbjct: 532 GGKGLSSFDLNDGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRASKGQNISEL 591 Query: 594 IDLNHNQDIVT 604 I+L ++I+T Sbjct: 592 INLGDQEEILT 602 >gi|152973860|ref|YP_001373377.1| DNA gyrase subunit A [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152022612|gb|ABS20382.1| DNA gyrase, A subunit [Bacillus cytotoxicus NVH 391-98] Length = 821 Score = 432 bits (1112), Expect = e-119, Method: Compositional matrix adjust. Identities = 234/578 (40%), Positives = 369/578 (63%), Gaps = 24/578 (4%) Query: 9 SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68 S+ + ++ V++ + +L YA+S I RA+PD+RDG KPVHRR+++AM+++G+ Sbjct: 2 SDNQQQARIREVNISQEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 61 Query: 69 GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128 A+KKSARIVGEVIGK HPHGD +VY+++VR+AQ F QRY L+ G GNFG+IDGDSAAA Sbjct: 62 DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSIDGDSAAA 121 Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188 RYTEA+M++++ +L+ + ++ +D++D Y+ + EPVV P++FPNLL NG +GIAVGMA Sbjct: 122 MRYTEAKMSKISMELLRDITKNTIDYQDNYDGSEREPVVLPARFPNLLVNGATGIAVGMA 181 Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248 T+IP H + E+ + LAL NPEI+I +L+EYI GPDFPT G+I+ R I +Y GRG Sbjct: 182 TNIPPHQLGEVIDGVLALSRNPEITIAELMEYIPGPDFPTAGLIL-GRSGIRRAYETGRG 240 Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AE 307 +RA+ +EE G I+VTEIPYQV K+RLIEKIAEL+ K+I + D+RDES Sbjct: 241 SITLRAKVEIEEKANGRQSIIVTEIPYQVNKARLIEKIAELVRDKKIDGITDLRDESDRR 300 Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367 +RIV+ + R + ++L+ +++ + ++T F +NM L G P+V+ L L +L H Sbjct: 301 GLRIVMEVR-RDANANVLLNNLYKHTALQTSFGINMLSLVDGE-PKVLNLKQTLYYYLEH 358 Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLT 424 ++ V+ RR+++ ++ + R IL+GL IA ++DE+I +IR+ D K ++ RF+L+ Sbjct: 359 QKVVIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLIERFALS 418 Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484 E Q AIL++RL+ L LE +I+ E LL ++ ++L ++ I E+ EVKE Sbjct: 419 EKQAQAILDMRLQRLTGLEREKIEQEYQELLKLIAELKAILADEEKVLEIIREELTEVKE 478 Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSLKSHSVD---- 539 F+ RRT E++ +++ + +I ++ I + +++ G+I+ L + + Sbjct: 479 RFNDE-----RRT---EITIGGIESIEDEDLIPEQNIAITLTHNGYIKRLPASTYKTQNR 530 Query: 540 ----LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573 + + + D ++ L T D IL + GK Y Sbjct: 531 GGRGVQGMGTNDDDFVEHLLTTSTHDHILYFTNKGKVY 568 >gi|206975819|ref|ZP_03236730.1| DNA gyrase, A subunit [Bacillus cereus H3081.97] gi|217957587|ref|YP_002336129.1| DNA gyrase subunit A [Bacillus cereus AH187] gi|222093780|ref|YP_002527827.1| DNA gyrase subunit a [Bacillus cereus Q1] gi|229142243|ref|ZP_04270767.1| DNA gyrase subunit A [Bacillus cereus BDRD-ST26] gi|206745913|gb|EDZ57309.1| DNA gyrase, A subunit [Bacillus cereus H3081.97] gi|217063216|gb|ACJ77466.1| DNA gyrase, A subunit [Bacillus cereus AH187] gi|221237825|gb|ACM10535.1| DNA topoisomerase II, ATP-hydrolyzing (DNA gyrase, subunit A) [Bacillus cereus Q1] gi|228641261|gb|EEK97568.1| DNA gyrase subunit A [Bacillus cereus BDRD-ST26] gi|324324000|gb|ADY19260.1| DNA gyrase subunit A [Bacillus thuringiensis serovar finitimus YBT-020] Length = 823 Score = 432 bits (1112), Expect = e-119, Method: Compositional matrix adjust. Identities = 253/704 (35%), Positives = 416/704 (59%), Gaps = 50/704 (7%) Query: 9 SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68 S+ + ++ +++ + +L YA+S I RA+PD+RDG KPVHRR+++AM+++G+ Sbjct: 2 SDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 61 Query: 69 GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128 A+KKSARIVGEVIGK HPHGD +VY+++VR+AQ F QRY L+ G GNFG++DGDSAAA Sbjct: 62 DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 121 Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188 RYTEARM++++ +++ + ++ +D++D Y+ + EP+V P++FPNLL NGT+GIAVGMA Sbjct: 122 MRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMA 181 Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248 T+IP H + E+ + LAL NP+I+I +L+E I GPDFPT G+I+ R I +Y GRG Sbjct: 182 TNIPPHQLGEVIDGVLALSHNPDITIAELMECIPGPDFPTAGLIL-GRSGIRRAYETGRG 240 Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308 +RA+ +EE G I+VTE+PYQV K+RLIEKIAEL+ K+I + D+RDES + Sbjct: 241 SIILRAKVEIEEKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRN 300 Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368 ++ R + ++L+ +++ + ++T F +NM L G PQV+ L L +L H+ Sbjct: 301 GMRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGE-PQVLNLKQNLYHYLEHQ 359 Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTE 425 + V+ RR+++ ++ + R IL+GL IA ++DE+I +IR+ K ++ RF L+E Sbjct: 360 KVVIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTAEIAKQGLMERFGLSE 419 Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485 Q AIL++RL+ L LE +I+ E +L+ ++ ++L ++ I E+ EVKE Sbjct: 420 KQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIAELKAILADEEKVLEIIREELTEVKER 479 Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSLKSHSVD----- 539 F+ +RRT E++ +++ + +I ++ I + +++ G+I+ L + + Sbjct: 480 FND-----KRRT---EITIGGMESIEDEDLIPEQNIAITLTHNGYIKRLPASTYKTQNRG 531 Query: 540 ---LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLL 581 + + + D ++ L T D IL + GK Y +P NLL Sbjct: 532 GRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEIPEYSRTAKGIPIINLL 591 Query: 582 SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR-KGKT 640 G GE I +I + D F++ +T + + + ++F AN R G Sbjct: 592 -GVDKGEWINAIIPIREFGD--DEFLFFTTKQGISKRTPLSSF--------ANIRTNGLI 640 Query: 641 FLKVSSEEKMKLVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSR 683 + + E+++ V +GD +VG + +LI F+ + M R Sbjct: 641 AISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGR 684 >gi|228949216|ref|ZP_04111484.1| DNA gyrase subunit A [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228810499|gb|EEM56852.1| DNA gyrase subunit A [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 823 Score = 432 bits (1112), Expect = e-119, Method: Compositional matrix adjust. Identities = 253/704 (35%), Positives = 416/704 (59%), Gaps = 50/704 (7%) Query: 9 SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68 S+ + ++ +++ + +L YA+S I RA+PD+RDG KPVHRR+++AM+++G+ Sbjct: 2 SDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 61 Query: 69 GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128 A+KKSARIVGEVIGK HPHGD +VY+++VR+AQ F QRY L+ G GNFG++DGDSAAA Sbjct: 62 DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 121 Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188 RYTEARM++++ +++ + ++ +D++D Y+ + EP+V P++FPNLL NGT+GIAVGMA Sbjct: 122 MRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMA 181 Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248 T+IP H + E+ + LAL NP+I+I +L+E I GPDFPT G+I+ R I +Y GRG Sbjct: 182 TNIPPHQLGEVIDGVLALSHNPDITIAELMECIPGPDFPTAGLIL-GRSGIRRAYETGRG 240 Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308 +RA+ +EE G I+VTE+PYQV K+RLIEKIAEL+ K+I + D+RDES + Sbjct: 241 SIILRAKVEIEEKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRN 300 Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368 ++ R + ++L+ +++ + ++T F +NM L G PQV+ L L +L H+ Sbjct: 301 GMRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGE-PQVLNLKQNLYHYLEHQ 359 Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTE 425 + V+ RR+++ ++ + R IL+GL IA ++DE+I +IR+ K ++ RF L+E Sbjct: 360 KVVIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTAEIAKQGLMERFGLSE 419 Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485 Q AIL++RL+ L LE +I+ E +L+ ++ ++L ++ I E+ EVKE Sbjct: 420 KQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIAELKAILADEEKVLEIIREELTEVKER 479 Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSLKSHSVD----- 539 F+ +RRT E++ +++ + +I ++ I + +++ G+I+ L + + Sbjct: 480 FND-----KRRT---EITIGGMESIEDEDLIPEQNIAITLTHNGYIKRLPASTYKTQNRG 531 Query: 540 ---LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLL 581 + + + D ++ L T D IL + GK Y +P NLL Sbjct: 532 GRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEIPEYSRTAKGIPIINLL 591 Query: 582 SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR-KGKT 640 G GE I +I + D F++ +T + + + ++F AN R G Sbjct: 592 -GVDKGEWINAIIPIREFGD--DEFLFFTTKQGISKRTPLSSF--------ANIRTNGLI 640 Query: 641 FLKVSSEEKMKLVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSR 683 + + E+++ V +GD +VG + +LI F+ + M R Sbjct: 641 AISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGR 684 >gi|195942015|ref|ZP_03087397.1| DNA gyrase, subunit A (gyrA) [Borrelia burgdorferi 80a] Length = 810 Score = 432 bits (1112), Expect = e-119, Method: Compositional matrix adjust. Identities = 245/611 (40%), Positives = 380/611 (62%), Gaps = 35/611 (5%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 +E + V + ++ YL YA+S I RA+PD+RDG KPVHRRI+++M EMGL AFK Sbjct: 7 KEQILNVRIEDEIKTSYLNYAMSVIVSRALPDVRDGLKPVHRRILYSMYEMGLRSDKAFK 66 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 K+ RIVG+V+GK HPHGDQS+YD+LVRLAQ F RYP+I GQGNFG+IDGD AA RYTE Sbjct: 67 KAGRIVGDVLGKYHPHGDQSIYDALVRLAQDFSLRYPVIRGQGNFGSIDGDPPAAMRYTE 126 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 A+M ++ E I++ +D++ V+F+ Y++ SEP + PS FP LL NG+SGIAVGMAT++ Sbjct: 127 AKMEKITEYIVKDIDKETVNFKSNYDDSLSEPEIMPSSFPFLLVNGSSGIAVGMATNMAP 186 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN++EIC+A + ++DN SI LL+ + GPDFPT G IV + ++++++Y+ G+G +R Sbjct: 187 HNLREICDAIVYMLDNENASIFDLLKIVKGPDFPTFGEIVYN-DNLIKAYKTGKGSVVIR 245 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIV 312 AR+ +EE I+VTEIPY V KS L+ K+A L +++ L DIRDES E +RIV Sbjct: 246 ARYHIEERAEDRNAIIVTEIPYTVNKSALLMKVALLAKEEKLEGLLDIRDESDREGIRIV 305 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 L K R DP ++M ++ ++ + F +N N+ + +P+ + L+ +L E++ HR+ ++ Sbjct: 306 LEVK-RGFDPHVIMNLLYEYTEFKKHFSIN-NLALVNGIPKQLNLEELLFEFIEHRKNII 363 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVD 429 RR F ++ + +L+GL IA NIDE+I II++ K +VS F L+E Q + Sbjct: 364 ERRIEFDLRKAKEKAHVLEGLNIALNNIDEVIKIIKSSKLAKDAKEKLVSNFGLSEIQAN 423 Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAE-KEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488 ++L++RL+ L LE ++++ EL+ LL+ K+ D LLN +R + I + Sbjct: 424 SVLDMRLQKLTALEIFKLEEELNILLSLIKDYEDILLNP-----------VRIINIIREE 472 Query: 489 STDLG-----RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD---- 539 + +LG RRT K ++ M +KE I V+++ +G+++ L + Sbjct: 473 TINLGLKFGDERRTKIIYDEEVLKTSMSDLM-QKENIVVMLTKKGFLKRLSQNEYKLQGT 531 Query: 540 ----LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLL 593 LS+ +GD + IAL +T D + ++S +GK Y + A + S G+ I L Sbjct: 532 GGKGLSSFDLNDGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRASKGQNISEL 591 Query: 594 IDLNHNQDIVT 604 I+L ++I+T Sbjct: 592 INLGDQEEILT 602 >gi|227485762|ref|ZP_03916078.1| DNA topoisomerase (ATP-hydrolyzing) [Anaerococcus lactolyticus ATCC 51172] gi|227236317|gb|EEI86332.1| DNA topoisomerase (ATP-hydrolyzing) [Anaerococcus lactolyticus ATCC 51172] Length = 815 Score = 432 bits (1112), Expect = e-119, Method: Compositional matrix adjust. Identities = 259/694 (37%), Positives = 416/694 (59%), Gaps = 32/694 (4%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 +N+ + L ++ YL Y++S I RA+PD+RDG KPVHRRI++ M ++GLD +K Sbjct: 5 QNIINIDLEKKMKSSYLEYSMSVIVSRALPDVRDGLKPVHRRILYGMQQLGLDPNKPTRK 64 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 SAR+VG+V+GK HPHGD ++YD+LVRLAQ F RYPL GQGNFG+IDGD AAA RYTE Sbjct: 65 SARVVGDVMGKFHPHGDSAIYDALVRLAQDFSTRYPLAQGQGNFGSIDGDQAAAMRYTEV 124 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 RM+++A+ +L+ + +D VDF ++ E+ EP V PS+FPNLL NG++GIAVGMAT++ H Sbjct: 125 RMSKIAKEMLRDIGKDTVDFIPNFDGEEMEPSVLPSRFPNLLVNGSNGIAVGMATNMAPH 184 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 N+ E +A +A + NPEISI+ L+++I GPDFPTG +I+ + I E+Y GRG + RA Sbjct: 185 NLGESIDACIAYMRNPEISIDDLIKFIPGPDFPTGALIL-GKTGIKEAYTTGRGKIKQRA 243 Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVL 313 +E + I+++EIPYQV K+RLIEKIA+L+ KRI + DIRDES + +RIV+ Sbjct: 244 VCRIEPFKKNRERIIISEIPYQVNKARLIEKIADLVKEKRIDGISDIRDESDRKGMRIVV 303 Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373 K R + ++++ +++ + +E F + +N+ +G P+++ L +++ ++ H++EV+ Sbjct: 304 EIK-RDSNANIVLNNLYKYTQLENTFGI-INLALVGGEPKILNLKELIEYYVDHQKEVVT 361 Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDA 430 RR++F + R I++GL+IA +IDEII IIR + D+ K + R+ L++ Q A Sbjct: 362 RRTNFDLSRARERKHIVEGLIIAIDHIDEIIKIIRSSYDNDEIKKIFFDRYKLSDAQSQA 421 Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490 IL+++L+ L LE ++ +E L E + S+LNS + N I EI E+KE +S Sbjct: 422 ILDMQLKRLSGLEIEKLNAENKELADTIEYLLSILNSEENLINLIIDEITEIKEKYSDE- 480 Query: 491 DLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSL--KSHSVD------LS 541 RRT D+ + +IE+E I + ++ G+I+ L ++ V ++ Sbjct: 481 ----RRTKIV----PDEGEIDITELIEEEDILINLTKDGYIKRLPIDTYKVQNRGGKGIA 532 Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNHN 599 A + KEGD +K + +T + +L ++ GK Y+L A + G G+AI +++L Sbjct: 533 AGNTKEGDFIKKIITTNTHEDLLFFTSLGKVYSLEAYKIPEGSRTSRGQAIINILNLETG 592 Query: 600 QDIVTAFVYDSTCK--LLVVSSKGNAFIVEESEIIANTRK-GKTFLKVSSEEKMKLVVKV 656 + I K LV+ ++ ++E N R+ G + + +K+ V ++ Sbjct: 593 EKITEMMTLSELSKNSQLVLQTQQGQIKKTDAENFTNIRRNGIIAISLKDWDKLISVRQI 652 Query: 657 TGDHVAVVGENRKLLI-FSIDQIPEMSRGK-GVR 688 D ++ + I F+ + M R GVR Sbjct: 653 DKDEELIISTQNGMTIQFNTKDVRSMGRSAVGVR 686 >gi|221218140|ref|ZP_03589606.1| DNA gyrase, A subunit [Borrelia burgdorferi 72a] gi|224533599|ref|ZP_03674188.1| DNA gyrase, A subunit [Borrelia burgdorferi CA-11.2a] gi|225548621|ref|ZP_03769668.1| DNA gyrase, A subunit [Borrelia burgdorferi 94a] gi|225549647|ref|ZP_03770613.1| DNA gyrase, A subunit [Borrelia burgdorferi 118a] gi|221192088|gb|EEE18309.1| DNA gyrase, A subunit [Borrelia burgdorferi 72a] gi|224513272|gb|EEF83634.1| DNA gyrase, A subunit [Borrelia burgdorferi CA-11.2a] gi|225369924|gb|EEG99371.1| DNA gyrase, A subunit [Borrelia burgdorferi 118a] gi|225370651|gb|EEH00087.1| DNA gyrase, A subunit [Borrelia burgdorferi 94a] Length = 810 Score = 432 bits (1112), Expect = e-119, Method: Compositional matrix adjust. Identities = 245/611 (40%), Positives = 380/611 (62%), Gaps = 35/611 (5%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 +E + V + ++ YL YA+S I RA+PD+RDG KPVHRRI+++M EMGL AFK Sbjct: 7 KEQILNVRIEDEIKTSYLNYAMSVIVSRALPDVRDGLKPVHRRILYSMYEMGLRSDKAFK 66 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 K+ RIVG+V+GK HPHGDQS+YD+LVRLAQ F RYP+I GQGNFG+IDGD AA RYTE Sbjct: 67 KAGRIVGDVLGKYHPHGDQSIYDALVRLAQDFSLRYPVIRGQGNFGSIDGDPPAAMRYTE 126 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 A+M ++ E I++ +D++ V+F+ Y++ SEP + PS FP LL NG+SGIAVGMAT++ Sbjct: 127 AKMEKITEYIVKDIDKETVNFKSNYDDSLSEPEIMPSSFPFLLVNGSSGIAVGMATNMAP 186 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN++EIC+A + ++DN SI LL+ + GPDFPT G IV + ++++++Y+ G+G +R Sbjct: 187 HNLREICDAIVYMLDNENASIFDLLKIVKGPDFPTFGEIVYN-DNLIKAYKTGKGSVVIR 245 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIV 312 AR+ +EE I+VTEIPY V KS L+ K+A L +++ L DIRDES E +RIV Sbjct: 246 ARYHIEERAEDRNAIIVTEIPYTVNKSALLMKVALLAKEEKLEGLLDIRDESDREGIRIV 305 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 L K R DP ++M ++ ++ + F +N N+ + +P+ + L+ +L E++ HR+ ++ Sbjct: 306 LEVK-RGFDPHVIMNLLYEYTEFKKHFSIN-NLALVNGIPKQLNLEELLFEFIEHRKNII 363 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVD 429 RR F ++ + +L+GL IA NIDE+I II++ K +VS F L+E Q + Sbjct: 364 ERRIEFDLRKAKEKAHVLEGLNIALNNIDEVIKIIKSSKLAKDAKERLVSNFGLSEIQAN 423 Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAE-KEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488 ++L++RL+ L LE ++++ EL+ LL+ K+ D LLN +R + I + Sbjct: 424 SVLDMRLQKLTALEIFKLEEELNILLSLIKDYEDILLNP-----------VRIINIIREE 472 Query: 489 STDLG-----RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD---- 539 + +LG RRT K ++ M +KE I V+++ +G+++ L + Sbjct: 473 TINLGLKFGDERRTKIIYDEEVLKTSMSDLM-QKENIVVMLTKKGFLKRLSQNEYKLQGT 531 Query: 540 ----LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLL 593 LS+ +GD + IAL +T D + ++S +GK Y + A + S G+ I L Sbjct: 532 GGKGLSSFDLNDGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRASKGQNISEL 591 Query: 594 IDLNHNQDIVT 604 I+L ++I+T Sbjct: 592 INLGDQEEILT 602 >gi|323705856|ref|ZP_08117428.1| DNA gyrase, A subunit [Thermoanaerobacterium xylanolyticum LX-11] gi|323534852|gb|EGB24631.1| DNA gyrase, A subunit [Thermoanaerobacterium xylanolyticum LX-11] Length = 812 Score = 432 bits (1112), Expect = e-119, Method: Compositional matrix adjust. Identities = 264/711 (37%), Positives = 427/711 (60%), Gaps = 37/711 (5%) Query: 4 DNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63 DN +N E V V + +++ ++ YA+S I RA+PD+RDG KPVHRRI++AM+ Sbjct: 3 DNTNNE----ELRVIPVDVEDEMKKSFIDYAMSVIVSRALPDVRDGLKPVHRRILYAMNG 58 Query: 64 MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123 +GL +KKS +VGEV+GK HPHGD +VYD++VR+AQ F R L+ G GNFG+IDG Sbjct: 59 LGLTPDKPYKKSVTVVGEVLGKYHPHGDVAVYDAMVRMAQDFSMRETLVDGHGNFGSIDG 118 Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183 D AAA RYTEAR++++A +L ++++ VDF ++E EPVV PS+FPNLL NG+ GI Sbjct: 119 DPAAAMRYTEARLSKIALEMLTDINKETVDFVPNFDENYKEPVVLPSRFPNLLVNGSQGI 178 Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243 AVGMAT+IP HN+ E+ + +A IDNP I+ ++L+ YI GPDFPTGG+IV ++ I E+Y Sbjct: 179 AVGMATNIPPHNLGEVIDGIIAYIDNPYIATDELMRYIKGPDFPTGGLIV-GKDGIRETY 237 Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303 GRG VRA+ +EE G IVVTE+PY V KS+L+EKIAEL+ K I + D+RD Sbjct: 238 ETGRGKIIVRAKAEIEE-HNGRNRIVVTELPYMVIKSKLVEKIAELVRDKHIEGISDLRD 296 Query: 304 ESAED-VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362 ES + +RIV+ K R ++P +++ ++M + M+ F M L G P+++ L+ I++ Sbjct: 297 ESDRNGMRIVIELK-RDVNPKVVLNKLYMHTQMQQTFGAIMLALVDG-APKILSLNQIIE 354 Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV----MV 418 +++ H+ +V+ RR+ F +Q + R IL+GL IA +IDE+I +IR+ K +P+ ++ Sbjct: 355 KYVDHQVDVITRRTKFDLQKAEERAHILEGLKIALDHIDEVINVIRSS-KTEPIAKNNLM 413 Query: 419 SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE 478 +F L++ Q AI+++RL L LE +I+ EL++L + +++ S+L+ K+ + I E Sbjct: 414 DKFGLSDRQAQAIVDMRLGRLTGLERQKIEDELNDLYQKIKELKSILSDEKKVLDIIKKE 473 Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL----- 533 +++VK+ +S RRT V++ D+ ++ +++ E V +++ G+I+ + Sbjct: 474 LKDVKDKYSSG-----RRTHI--VAKEDEVDIED-LVQLEDAVVTMTHFGYIKRMPLDAY 525 Query: 534 ---KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGE 588 K +S + +E D ++ T DR+L + GK Y+L ++ SGR G Sbjct: 526 KAQKRGGKGISGISTREDDFVENVFTTTTHDRLLFFTNKGKVYSLRTIDIPESGRQAKGT 585 Query: 589 AIQLLIDLNHNQDI--VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK-GKTFLKVS 645 AI LI ++ ++ + V K +V+ +K E + +K G T +K+ Sbjct: 586 AIINLIQIDQDEKVNAVIPIKKSHNAKYVVMCTKNGIIKKTEIDDFPKIKKSGNTAIKLD 645 Query: 646 SEEKMKLVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSR-GKGVRLQSYKD 694 +++ V+ G+ ++G I F D + M R +GV + +D Sbjct: 646 DGDELINVMLTDGNREIIIGTANGFCIRFHEDNLRPMGRQARGVIAVTLRD 696 >gi|260558232|ref|ZP_05830428.1| DNA gyrase subunit A [Enterococcus faecium C68] gi|260075406|gb|EEW63712.1| DNA gyrase subunit A [Enterococcus faecium C68] Length = 823 Score = 432 bits (1112), Expect = e-119, Method: Compositional matrix adjust. Identities = 231/573 (40%), Positives = 363/573 (63%), Gaps = 22/573 (3%) Query: 13 VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72 + EN+ V+L +++ ++ YA+S I RA+PD+RDG KPVHRRI++ M+E+G+ A Sbjct: 5 IRENIHDVNLTSEMKDSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKAH 64 Query: 73 KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132 KKSARIVG+V+GK HPHGD ++Y S+VR+AQPF RY L+ G GNFG++DGD AAA RYT Sbjct: 65 KKSARIVGDVMGKYHPHGDSAIYGSMVRMAQPFSYRYMLVDGHGNFGSVDGDGAAAMRYT 124 Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192 EARM+++A +L+ ++++ VDF+ Y++ + EPVV P++FPNLL NGT+GIAVGMAT+IP Sbjct: 125 EARMSKIATEMLRDINKNTVDFQSNYDDTEKEPVVLPARFPNLLVNGTTGIAVGMATNIP 184 Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252 HN+ E+ A L+DNP+++ +L+E + GPDFPTGG+++ + I +Y G+G V Sbjct: 185 PHNLSEVVAAIDLLMDNPDVTTNELMEVLPGPDFPTGGLVM-GKSGIRRAYETGKGSITV 243 Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRI 311 RA+ + E+ G I+VTE+PY V K++LIE+I+EL KRI + D+RDES+ E +RI Sbjct: 244 RAKVEITEMPNGKERIIVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMRI 303 Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371 V+ + R +++ +++ L+ ++ F NM + G VP+V+ L IL+ ++ H+REV Sbjct: 304 VIDIR-RDASASVILNNLYKLTSLQNSFGFNMLAIEKG-VPKVLSLKQILENYIEHQREV 361 Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQV 428 + RR+ F + + R IL+GL IA +IDEIIAIIR ++D+ K M+ RF L++ Q Sbjct: 362 ITRRTVFEKEKAEARAHILEGLRIALDHIDEIIAIIRGSKSDDEAKATMIERFDLSDRQS 421 Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488 AIL++RLR L LE +I++E LL E + +L ++ I E+ ++ + F Sbjct: 422 QAILDMRLRRLTGLEREKIENEYQELLKLIEDLTDILARPERVTEIIKNELADLNQRF-- 479 Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DL 540 G +R T V + + E+E + + ++N G+I+ L ++ + Sbjct: 480 ----GDKRRTELLVGEVLSLEDEDLIEEEEIV-ITLTNNGYIKRLANNEFRAQRRGGRGV 534 Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573 + D +K + T D +L + +GK Y Sbjct: 535 QGMGIHNDDFVKNLVSCSTHDTLLFFTNNGKVY 567 >gi|150387860|ref|YP_001317909.1| DNA gyrase, A subunit [Alkaliphilus metalliredigens QYMF] gi|149947722|gb|ABR46250.1| DNA gyrase, A subunit [Alkaliphilus metalliredigens QYMF] Length = 830 Score = 432 bits (1112), Expect = e-119, Method: Compositional matrix adjust. Identities = 243/644 (37%), Positives = 396/644 (61%), Gaps = 35/644 (5%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 ++N+ +++ +++ Y+ Y++S I RA+PD+RDG KPVHRRI+++M E+G+ K Sbjct: 5 KDNIVPINIESEMKKSYIDYSMSVIVGRALPDVRDGLKPVHRRILYSMIELGVTPDKPHK 64 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSARIVG+V+GK HPHGD +VYD++VRLAQ F RY L+ G GNFG++DGD AAA RYTE Sbjct: 65 KSARIVGDVLGKYHPHGDTAVYDAMVRLAQDFSMRYLLVDGHGNFGSVDGDGAAAMRYTE 124 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 AR+++++ +++ ++++ VD+R ++E EP V PS+FPNLL NG++GIAVGMAT+IP Sbjct: 125 ARLSKISVEMIRDINKETVDYRPNFDETLKEPAVLPSRFPNLLVNGSNGIAVGMATNIPP 184 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E+ ++ + LID+ E IE +E+I GPDFPTGGII+ + E I ++Y GRG +VR Sbjct: 185 HNLGEVIDSVVTLIDDSEAEIEDFMEHIKGPDFPTGGIILGT-EGIKDAYTTGRGKIKVR 243 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIV 312 A+ +EE+ +G I+V EIPYQV K+RLIEKIAEL+ K+I + D+RDES E +RIV Sbjct: 244 AKASIEEMSKGRQHIIVNEIPYQVNKARLIEKIAELVRDKKIEGISDLRDESDREGMRIV 303 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 + K R + ++++ ++ + +E F + M + G+ P+V+ L +L +L H+++++ Sbjct: 304 IELK-RDANANVVLNKLYKHTQLEDTFGVIMIAIVDGQ-PKVLNLKEVLTHYLNHQKDII 361 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVD 429 RR+ F + + R IL+GL IA N+DE+I +IR D K ++ +FSL+E Q Sbjct: 362 VRRTKFDLNKAEDRAHILEGLKIALDNLDEVIKLIRGSDNTQIAKAGLMEKFSLSEKQAQ 421 Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489 AIL++RL+ L LE +++ E L+ + +L + + + I E+ E++E ++ Sbjct: 422 AILDMRLQKLTGLEIEKVEEEYKELIKIINHLKEILANERLLLDIIKEELLEIREKYAD- 480 Query: 490 TDLGRRRTTFCEVSRADKATLQQA-MIEKEPITVVISNRGWI--------RSLKSHSVDL 540 +RRT D ++ ++++E + + +++ G+I RS K + Sbjct: 481 ----KRRTEIA----IDPGSINMIDLVDEEDVVITLTHFGYIKRLPIDTYRSQKRGGKGI 532 Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNH 598 S + ++ D ++ T +L + GK Y L + GR G AI L+ L+ Sbjct: 533 SGVTTRDEDFVEKLTITSTHSPLLFFTNLGKVYKLNVYEIPEGRRQAKGTAIVNLLQLSA 592 Query: 599 NQDIVTAFVYDSTCK---LLVVSSKGNAFIVEESEIIA--NTRK 637 N+ I D C L++ + KG I++++E+ NTRK Sbjct: 593 NEKIAAVIPVDRDCNEQYLVMATQKG---IIKKTELCQFDNTRK 633 >gi|78221233|ref|YP_382980.1| DNA gyrase subunit A [Geobacter metallireducens GS-15] gi|78192488|gb|ABB30255.1| DNA gyrase subunit A [Geobacter metallireducens GS-15] Length = 857 Score = 432 bits (1111), Expect = e-119, Method: Compositional matrix adjust. Identities = 272/727 (37%), Positives = 405/727 (55%), Gaps = 62/727 (8%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 N AV++ ++ Y+ YA+S I RA+PD+RDG KPVHRR ++AM +MG D+ +KKS Sbjct: 7 NKTAVNIEDEMKRSYMDYAMSVIIGRALPDVRDGLKPVHRRCLYAMYDMGNDYNKPYKKS 66 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 AR+VG+VIGK HPHGD + YD++VR+AQ F RYPL+ GQGNFG++DGDS AA RYTE R Sbjct: 67 ARVVGDVIGKYHPHGDTAAYDTIVRMAQDFSLRYPLVDGQGNFGSVDGDSPAAMRYTEIR 126 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 M Q+A +L ++++ VD Y+ +EP+V PSKFPNLL NG+SGIAVGMAT+IP HN Sbjct: 127 MEQLAHELLNDLEKETVDLGFNYDGSLTEPLVLPSKFPNLLVNGSSGIAVGMATNIPPHN 186 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 + E+ + +A I NP IS E+LL + GPDFPTGG I RE I++ YR GRG ++RAR Sbjct: 187 LSEVIDGIIATIGNPHISFEELLALVPGPDFPTGGFIY-GREGILQGYRTGRGIVQMRAR 245 Query: 256 WCVEEVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314 +E + IVVTEIPYQV K+ LI KIAEL+ K++ + DIRDES D ++ Sbjct: 246 ASIETHKKTERQSIVVTEIPYQVNKANLITKIAELVREKKLEGISDIRDESDRDGMRIVI 305 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 R +P +++ ++ + M+T F +NM + GR P+V+ L + ++ HRRE++ R Sbjct: 306 DLKRDENPQVILNHLYKQTQMQTSFGINMLAIVAGR-PKVLTLQDAIGHFIDHRREIVTR 364 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK-------------------- 414 R+ F ++ + R IL+G IA +D +I +IR P Sbjct: 365 RTIFDLKKAEARAHILEGYKIALDWLDAVIELIRGSKTPAEAREGLMSGLFSDEEWLQKM 424 Query: 415 ----PVMVSRFS----LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466 P + S++ LTE Q ILNLRL L LE +I E +++L ++ +L Sbjct: 425 GLPLPAIHSQYQKPVRLTEVQAQEILNLRLHRLTGLERDKILQEYEDILKYIARLKEILA 484 Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526 S + I E+RE+KE F RRT V R+ + +L+ ++E E + V +S+ Sbjct: 485 SEAEILKIIVGELRELKEKFGDE-----RRTEI--VDRSAEISLEDTIVE-EDVVVTVSH 536 Query: 527 RGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAG 578 G+I RS + + + KE D ++ A + D +L + GK Y + Sbjct: 537 TGYIKRTAVSQYRSQRRGGKGKTGMKTKEEDFVEHLFVASSKDFMLFFTDAGKVYQIKVY 596 Query: 579 NLLSG--RGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEI-- 631 + G G+AI L++L N+ I +D +L+ + G +V++S + Sbjct: 597 EIPEGGRATRGKAIVNLLNLQENEQITAILSVKGFDDERNILMATRLG---VVKKSPLRE 653 Query: 632 IANTRKGKTFLKVSSEEKMKLVVKVTGD---HVAVVGENRKLLIFSIDQIPEMSR-GKGV 687 AN R G + V+ +E+ KL+ D V + N K + F + M R +GV Sbjct: 654 YANIRSG-GIIAVNLDEEDKLIAVALTDGRQDVLLASRNGKSIRFHEEDARPMGRVSRGV 712 Query: 688 RLQSYKD 694 R + +D Sbjct: 713 RGMTLED 719 >gi|260891936|ref|YP_003238033.1| DNA gyrase, A subunit [Ammonifex degensii KC4] gi|260864077|gb|ACX51183.1| DNA gyrase, A subunit [Ammonifex degensii KC4] Length = 802 Score = 432 bits (1111), Expect = e-119, Method: Compositional matrix adjust. Identities = 262/711 (36%), Positives = 413/711 (58%), Gaps = 41/711 (5%) Query: 26 LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85 + + YL YA+S I RA+PD+RDG KPVHRRI++AM +G+ +KSA IVGEV+ + Sbjct: 13 MRQSYLDYAMSVIVGRALPDVRDGLKPVHRRILYAMHTLGMTPDRPHRKSAYIVGEVLAR 72 Query: 86 LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145 HPHGD VYD+LVRLAQ F RYPL+ G GNFG+IDGD+ AA RYTEAR+++ A +L+ Sbjct: 73 YHPHGDAPVYDALVRLAQDFACRYPLVDGHGNFGSIDGDAPAAMRYTEARLSRYALEMLR 132 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 +++D VDF Y+ EP V PS+ PNLL NG++GIAVGMAT+IP HN+ E+ + LA Sbjct: 133 DINKDTVDFVPNYDGTTQEPAVLPSRLPNLLVNGSAGIAVGMATNIPPHNLGEVIDGLLA 192 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265 LIDNP++S+E+L+ Y+ GPDFPTGGII+ RE I +Y GRGG VR + +E G + Sbjct: 193 LIDNPDLSLEELMRYVPGPDFPTGGIIL-GREGIRTAYATGRGGIVVRGKATIERKGNRN 251 Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325 IV+TEIPYQV K+RL+E+IAEL+ KR+ + D+RDES V+ R DP ++ Sbjct: 252 -LIVITEIPYQVNKARLLERIAELVKEKRLEGVADLRDESDRSGIRVVVELKRDADPQVI 310 Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385 + ++ + +E F + M L G+ P+V+ L +++ +L H++EV+ RR + ++ Sbjct: 311 LNRLYKHTQLEETFGVIMLALVNGQ-PEVLSLKEMMRHYLNHQKEVVVRRCQYELREAQL 369 Query: 386 RVEILKGLLIAYLNIDEIIAIIRN-EDKP--KPVMVSRFSLTENQVDAILNLRLRSLRKL 442 R+E+++GL++A NID ++ +I+ D P K ++S F LTE Q AIL++RL+ L L Sbjct: 370 RLEVVEGLVVAVDNIDAVVQLIKTAPDVPTAKERLISTFGLTEKQAQAILDMRLQRLTAL 429 Query: 443 EEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEV 502 E ++ +EL L + ++ +L + W + E++ +KE F+ RRT + Sbjct: 430 EREKLVAELKELKEKIAYLEGVLADEAKVWGIVKEELKALKERFADP-----RRTLIVD- 483 Query: 503 SRADKATLQ-QAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKI 553 ++ T + + +I E + V++S++G+I RS ++ L K+GD ++ Sbjct: 484 ---EEVTYRPEDLIPAEQVVVLLSHQGYIKRQDKSLYRSQHRGGRGVTGLKLKDGDFVRH 540 Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFV---- 607 A+T D +L ++ G+ + L + G G A+ L+ L+ + VTA + Sbjct: 541 LYLANTHDYLLFFTSAGRVHRLKVYEIPEAERAGRGTALPNLLQLSPEEQ-VTAIIPVAD 599 Query: 608 YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV-SSEEKMKLVVKVTGDHVAVVGE 666 + +L+V+ +G + E+ R G + + +E + + + V +V E Sbjct: 600 FSEDKYVLLVTRQGVVKKLPLGELANIRRVGLNAISLDPGDELVAAALPGPEEEVLLVTE 659 Query: 667 NRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAG 716 K + F ++ M R +GVR + G D + GL +D AG Sbjct: 660 GGKAIRFRAAEVRPMGRAARGVRGMKLRPG---DRVA-----GLAVLDGAG 702 >gi|111115262|ref|YP_709880.1| DNA gyrase, subunit A [Borrelia afzelii PKo] gi|110890536|gb|ABH01704.1| DNA gyrase, subunit A [Borrelia afzelii PKo] Length = 810 Score = 432 bits (1111), Expect = e-119, Method: Compositional matrix adjust. Identities = 250/632 (39%), Positives = 387/632 (61%), Gaps = 40/632 (6%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 +E + V + ++ YL YA+S I RA+PD+RDG KPVHRRI+++M EMGL AFK Sbjct: 7 KEQILNVKIEDEIKTSYLNYAMSVIVSRALPDVRDGLKPVHRRILYSMYEMGLRSDKAFK 66 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 K+ RIVG+V+GK HPHGDQS+YD+LVRLAQ F RYP+I GQGNFG+IDGD AA RYTE Sbjct: 67 KAGRIVGDVLGKYHPHGDQSIYDALVRLAQDFSLRYPVIRGQGNFGSIDGDPPAAMRYTE 126 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 A+M ++AE I++ +D++ V+F+ Y++ SEP + PS FP LL NG+SGIAVGMAT++ Sbjct: 127 AKMARIAEYIVKDIDKETVNFKSNYDDSLSEPEIMPSSFPFLLVNGSSGIAVGMATNMAP 186 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN++EIC+A + ++DN SI LL+ + GPDFPT G IV + +++V++Y+ G+G +R Sbjct: 187 HNLREICDAIVYMLDNENASIFDLLKIVKGPDFPTFGEIVYN-DNLVKAYKTGKGSVVIR 245 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIV 312 AR+ +EE I+VTEIPY V KS L+ K+A L +++ L DIRDES E +RIV Sbjct: 246 ARYHIEERTEDRNAIIVTEIPYTVNKSALLMKVAFLAKEEKLEGLLDIRDESDREGIRIV 305 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 L K R DP ++M ++ ++ + F +N N+ + +P+ + L+ +L E++ HR+ ++ Sbjct: 306 LEVK-RGFDPHVIMNLLYEYTEFKKHFSIN-NLALVDGIPKQLNLEELLFEFIEHRKNII 363 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVD 429 RR F ++ + +L+GL IA NIDE+I II++ K +V+ F L+E Q + Sbjct: 364 ERRIEFDLRKAKEKAHVLEGLNIALNNIDEVIKIIKSSKLAKDAKERLVANFGLSEIQAN 423 Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAE-KEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488 ++L+++L+ L LE ++++ EL+ LL+ K+ D LLN +R + I + Sbjct: 424 SVLDMKLQKLTALEIFKLEEELNVLLSLIKDYEDILLNP-----------VRIINIIREE 472 Query: 489 STDLG-----RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD---- 539 + +LG RRT K ++ M +KE I V+++ +G+++ L + Sbjct: 473 TINLGLKFGDERRTKIIYDEEVLKTSMSDLM-QKENIVVMLTKKGFLKRLSQNEYKLQGT 531 Query: 540 ----LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLL 593 LS+ +GD + IAL ++ D + ++S +GK Y + A + S G+ I L Sbjct: 532 GGKGLSSFDLNDGDEIAIALCVNSHDYLFMISNEGKLYLINAYEIKDSSRASKGQNISEL 591 Query: 594 IDLNHNQDIVTA-----FVYDSTCKLLVVSSK 620 I+L ++I+T F DS L S K Sbjct: 592 INLGAQEEILTIKNSKDFTDDSYLLLTTASGK 623 >gi|296131559|ref|YP_003638806.1| DNA gyrase, A subunit [Thermincola sp. JR] gi|296030137|gb|ADG80905.1| DNA gyrase, A subunit [Thermincola potens JR] Length = 814 Score = 432 bits (1111), Expect = e-119, Method: Compositional matrix adjust. Identities = 262/692 (37%), Positives = 417/692 (60%), Gaps = 38/692 (5%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 +++ ++ YL YA+S I RA+PD+RDG KPVHRRI++AMSE+G+ KKSAR+V Sbjct: 15 ININDEMKNSYLDYAMSVIVGRALPDVRDGLKPVHRRILYAMSELGMTPDKPHKKSARLV 74 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 GEV+GK HPHGD +VYD++VR+AQ F RYPL+ G GNFG+IDGDSAAA RYTEARM ++ Sbjct: 75 GEVLGKYHPHGDTAVYDAMVRMAQDFACRYPLVDGHGNFGSIDGDSAAAMRYTEARMAKI 134 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 + +L +D+D VDF +++ EPVV P++ PNLL NG+SGIAVGMAT+IP HN+ EI Sbjct: 135 TQEMLADIDKDTVDFVPNFDDTLKEPVVLPARIPNLLINGSSGIAVGMATNIPPHNLGEI 194 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 + + LIDNP+ + ++L+ + GPDFPTGGII+ RE I +Y+ GRG R+RA+ +E Sbjct: 195 IDGVIMLIDNPDATPQELMMAVKGPDFPTGGIIM-GREGIKSAYKTGRGAIRIRAKTTIE 253 Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319 + G I+V E+PYQV K+RLIEKIAEL+ K+I + D+RDES ++ + Sbjct: 254 TMSNGKSRILVHELPYQVNKARLIEKIAELVRDKKIDGITDLRDESDRMGMQIVIELRKD 313 Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379 +P +++ +F + ++ F + M L G+ P+V+ L L +L H+++V+ RR+ F Sbjct: 314 ANPQVVLNQLFKHTQLQETFGVIMLALVDGQ-PKVLNLRDALFYYLEHQKDVITRRTRFE 372 Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAILNLRL 436 + + R IL+GL IA ++DE+I IR + + ++ +F L+E Q AIL++RL Sbjct: 373 LDKAEARAHILEGLKIALDHLDEVIKTIRESRTVEIARNALMDKFGLSEKQAQAILDMRL 432 Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496 + L LE +++ E NLL + ++L + I E+ +KE ++ RR Sbjct: 433 QKLTGLEREKLEEEYKNLLERIAYLKAVLANEHMVLGIIKEELLVIKEKYNDP-----RR 487 Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEG 548 T E+S D + +I +E + + I++ G+I R+ K ++A+ KE Sbjct: 488 T---EISINDVNIDTEDLIAEEDMVITITHLGYIKRIALDTYRNQKRGGRGVTAMGTKEE 544 Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEAIQLLIDLNHNQDIVTAF 606 D ++ T +L + GK Y L N+ +GR G AI L+ ++ ++ I TA Sbjct: 545 DFVEHLFITTTHHYLLFFTNKGKVYKLKVHNIPEAGRQAKGTAIVNLLYISGDEKI-TAV 603 Query: 607 V----YDSTCKLLVVSSKGNAFIVEESEII--ANTRKGKTFLKVSSEEKMKLV-VKVT-G 658 + +D+ LL ++ KG +++++ ++ +TRK + +S +E +L+ VK+T G Sbjct: 604 IPVRSFDTEEYLLTITRKG---VIKKTPLVEYGSTRK-DGIIALSLDENDELIDVKLTNG 659 Query: 659 DHVAVVGENR-KLLIFSIDQIPEMSR-GKGVR 688 + ++G K + F+ +++ M R +GVR Sbjct: 660 KNEVIIGTKEGKAIRFAEEEVRSMGRAARGVR 691 >gi|224477951|ref|YP_002635557.1| DNA gyrase subunit A [Staphylococcus carnosus subsp. carnosus TM300] gi|222422558|emb|CAL29372.1| DNA gyrase subunit A [Staphylococcus carnosus subsp. carnosus TM300] Length = 892 Score = 432 bits (1111), Expect = e-119, Method: Compositional matrix adjust. Identities = 254/669 (37%), Positives = 400/669 (59%), Gaps = 35/669 (5%) Query: 26 LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85 + E +L YA+S I RA+PD+RDG KPVHRRI++ ++E G+ +KKSARIVG+V+GK Sbjct: 18 MRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKSARIVGDVMGK 77 Query: 86 LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145 HPHGD S+Y+++VR+AQ F RYPL+ GQGNFG++DGD AAA RYTEARMT++A +L+ Sbjct: 78 YHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEARMTKLATELLR 137 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 +++D +DF D Y+ + EP V P++FPNLL NG SGIAVGMAT+IP HN+ E+ L+ Sbjct: 138 DINKDTIDFIDNYDGTEREPAVLPARFPNLLVNGASGIAVGMATNIPPHNMTEVINGVLS 197 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265 L NP+I+I +L+E I GPDFPT G+I+ + I +Y GRG ++RAR +EE G G Sbjct: 198 LSHNPDITISELMEDIQGPDFPTAGLIL-GKSGIRRAYETGRGSIQMRARAEIEERGGGR 256 Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA--EDVRIVLFPKNRSLDPD 323 IVV+EIP+QV K+R+IEKIAEL K++ + D+RDE++ VR+V+ + + + Sbjct: 257 QRIVVSEIPFQVNKARMIEKIAELAREKKVDGITDLRDETSLRTGVRVVIDIR-KDANAS 315 Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383 +++ +++ L+ ++T F +NM L GR P+++ L L E+L H++ V+ RR+ + ++ Sbjct: 316 VILNNLYKLTPLQTSFGVNMIALINGR-PKLINLKEALVEYLEHQKVVVRRRTEYNLKKA 374 Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQVDAILNLRLRSLR 440 + R IL+GL IA +IDEII+ IR + K M RF L+E Q AIL++RLR L Sbjct: 375 EDRAHILEGLRIALDHIDEIISTIRESETDKEAMERLQGRFKLSERQAQAILDMRLRRLT 434 Query: 441 KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500 LE +I+SE + L+A E++ ++L ++ + E+ EV+E F G R + Sbjct: 435 GLERDKIESEYNELIAYIEELRAILADEEKLLELVREELTEVRERF------GDERRSEI 488 Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DLSALHFKEGDSLK 552 ++ D+ + +I +E I + +S+ +I+ L + + ++ E D + Sbjct: 489 QLGGLDQIE-DEDLIPEEQIVITLSHNNYIKRLPVSTYRAQNRGGRGVQGMNTLEEDFVS 547 Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAFVYDS 610 + T D +L + G+ Y L + LS + G + I+L +++ I T + Sbjct: 548 QIVTMSTHDNVLFFTNKGRVYKLKGYEVPELSRQSKGIPVINAIELENDESISTMIAVND 607 Query: 611 TCK---LLVVSSKGNAFIVEESEIIAN----TRKGKTFLKVSSEEKMKLVVKVTGDHVAV 663 K LV ++K N + S ++N R GK + E+++ V G + Sbjct: 608 LEKEDAYLVFATK-NGIVKRSS--LSNFSHINRNGKIAINFRDEDELVAVRLTDGTKDVL 664 Query: 664 VGENRKLLI 672 +G + LI Sbjct: 665 LGTSHASLI 673 >gi|315925616|ref|ZP_07921826.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Pseudoramibacter alactolyticus ATCC 23263] gi|315621157|gb|EFV01128.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Pseudoramibacter alactolyticus ATCC 23263] Length = 832 Score = 432 bits (1111), Expect = e-118, Method: Compositional matrix adjust. Identities = 236/608 (38%), Positives = 381/608 (62%), Gaps = 28/608 (4%) Query: 13 VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72 V N++ V + ++ Y+ YA+S I RA+PD+RDG KPVHRRI++AM +MG+ F Sbjct: 10 VAHNLRNVKIEDEMKNCYIDYAMSVIIGRALPDVRDGLKPVHRRILYAMHQMGMTPDKPF 69 Query: 73 KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132 +KSARIVGEV+GK HPHGD SVYD++VR+AQ F RY ++GQGNFG++DGD AAA RYT Sbjct: 70 RKSARIVGEVLGKYHPHGDSSVYDAMVRMAQDFSTRYMTVNGQGNFGSVDGDGAAAMRYT 129 Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192 EARM++++ +L+ ++++ VDF D ++ + EPVV PS+FP+LL NG+ GIAVGMAT+IP Sbjct: 130 EARMSRISLEMLRDINKETVDFMDNFDGSEQEPVVLPSRFPHLLVNGSQGIAVGMATNIP 189 Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252 HN+ E+ + +A ID+P+IS++ L+ +I GPDFPT G+I+ + I E+Y GRG ++ Sbjct: 190 PHNLGEVIDGTIAYIDDPDISVDDLMTHIKGPDFPTAGVIL-GKSGIREAYETGRGRIKI 248 Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES--AEDVR 310 R++ V+ + +G IV++EIPY V K++LI+KIAEL+ KR+ + DIRDE+ +R Sbjct: 249 RSKVAVKNMTKGKKQIVISEIPYMVNKAKLIQKIAELVKDKRVEGITDIRDETDLKHGIR 308 Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370 IV+ K R + +++ ++ + ++ + + +N+ + P+V+ L IL ++AH++E Sbjct: 309 IVVELK-RDTNATIVLNQLYKHTQLQDTYGV-INLALVDGQPKVLSLKQILHYYVAHQKE 366 Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQ 427 ++ RR+ F ++ + R IL+G IA NIDE+I IIR K ++ RF+LT+ Q Sbjct: 367 IIVRRTKFDLKKAEARAHILEGYRIALDNIDEVIQIIRESRDAKIAKTHLMDRFALTDIQ 426 Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487 AIL++RL+ L LE +I++E L+ + + ++L K I E+ E+K+ + Sbjct: 427 AQAILDMRLQRLTGLEREKIETEYAELMQKIAEYKAILADEKLVLGIIKDELTEIKDKYG 486 Query: 488 KSTDLGRRRTTF-CEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV-------- 538 RRT+F +V D L I++E + V +++ G+++ + + + Sbjct: 487 DD-----RRTSFDIDVEDFDVEDL----IKEEEVVVTMTHVGYVKRIAADTYRAQNRGGK 537 Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL-LSGR-GHGEAIQLLIDL 596 +SAL +E D ++ T D +L + GK Y L A + + GR G AI ++ L Sbjct: 538 GISALSTRENDFIEHIFTTSTHDDLLFFTNKGKYYRLKAYEIPVGGRTSRGTAIVNILQL 597 Query: 597 NHNQDIVT 604 + ++ I T Sbjct: 598 DPDESITT 605 >gi|56707545|ref|YP_169441.1| DNA topoisomerase IV subunit A [Francisella tularensis subsp. tularensis SCHU S4] gi|110670016|ref|YP_666573.1| DNA topoisomerase IV subunit A [Francisella tularensis subsp. tularensis FSC198] gi|224456614|ref|ZP_03665087.1| DNA topoisomerase IV subunit A [Francisella tularensis subsp. tularensis MA00-2987] gi|254370068|ref|ZP_04986074.1| DNA topoisomerase IV subunit A [Francisella tularensis subsp. tularensis FSC033] gi|254874363|ref|ZP_05247073.1| DNA topoisomerase IV subunit A [Francisella tularensis subsp. tularensis MA00-2987] gi|56604037|emb|CAG45029.1| DNA topoisomerase IV subunit A [Francisella tularensis subsp. tularensis SCHU S4] gi|110320349|emb|CAL08412.1| DNA topoisomerase IV subunit A [Francisella tularensis subsp. tularensis FSC198] gi|151568312|gb|EDN33966.1| DNA topoisomerase IV subunit A [Francisella tularensis subsp. tularensis FSC033] gi|254840362|gb|EET18798.1| DNA topoisomerase IV subunit A [Francisella tularensis subsp. tularensis MA00-2987] gi|282158699|gb|ADA78090.1| DNA topoisomerase IV subunit A [Francisella tularensis subsp. tularensis NE061598] Length = 741 Score = 432 bits (1111), Expect = e-118, Method: Compositional matrix adjust. Identities = 263/731 (35%), Positives = 416/731 (56%), Gaps = 24/731 (3%) Query: 27 EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86 E+ YL Y++ I +RA+P + DG KPV RRII+AMSE+GL + +KKSAR VG+V+GK Sbjct: 18 EQAYLNYSMYVILDRALPHISDGLKPVQRRIIYAMSEIGLSHLSKYKKSARTVGDVLGKY 77 Query: 87 HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQVAELILQ 145 HPHGD + Y+++V +AQ F RYP I GQGN+G+ID S AA RYTE+R+++ A L+L Sbjct: 78 HPHGDSACYEAMVLMAQDFSYRYPFIDGQGNWGSIDDPKSFAAMRYTESRLSKYAVLLLD 137 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 + + VD+ ++ EP + P++ PN+L NG GIAVGM+T IP HN+ EI A L Sbjct: 138 ELKKGTVDWAKNFDGTMDEPKLLPAQVPNILLNGAMGIAVGMSTYIPPHNITEIINACLQ 197 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265 L+ P +IE++LE + PD+P G I+ S+E I + Y+ G G R +A V E S Sbjct: 198 LLSKPNSTIEEILEIVEAPDYPGGANIISSKEEIADVYKSGNGSIRQQA---VYEYDNHS 254 Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES--AEDVRIVLFPKNRSLDPD 323 +V+T++P+QV + ++E+IA + ++I +++I+DES E V+IVL+ + Sbjct: 255 -NVVITKLPHQVSSAAVMEQIANELKQQKITWIKNIQDESDDKEPVKIVLYSATIKKNIK 313 Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383 +M + +D+E F +NMN++ + PQV L IL EWL +R+ L RR + + Sbjct: 314 KIMGHLLATTDLEKSFRVNMNMIGLDNRPQVKNLLDILNEWLEYRKHTLRRRLQTSLDKV 373 Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLE 443 R+ IL+GLLIA+LNIDE+I IIRN D + +RF+L+E Q +AILN+RLR L K+E Sbjct: 374 LDRLHILEGLLIAFLNIDEVIDIIRNYDDSSGELQTRFTLSEIQAEAILNIRLRKLAKIE 433 Query: 444 EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVS 503 E +IK E L E+E ++ LNS + N + E +++ TD G R + V+ Sbjct: 434 EIEIKKEQKELQKERELLEGYLNSEVKFRNLMKKEFKQI------LTDFGDSRRSKIIVA 487 Query: 504 RADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRI 563 +A ++ ++ E +T+++S GWIR K ++D + L +K D + ++ ++ Sbjct: 488 EKAQALEEKDLMPSEKVTIILSKAGWIRCAKGENIDPAGLSYKPEDKPFLVTTGNSNIKL 547 Query: 564 LLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNA 623 + S GKAY++ L S RG+GE I I L+ I++ ++ L+ S G A Sbjct: 548 VFFSKLGKAYSMYIDKLPSARGYGEHITTYIPLDKQDQIISMAFVNAARYFLIASESGKA 607 Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR 683 F++ ++I N GK +++ K + + V + +I + + Sbjct: 608 FVIPAEDLITNKVTGKNIF--DADDVFKFIPYDKDLKMLAVSSQGRAIIRDFASFALLKK 665 Query: 684 GKG---VRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNR--SENDLLGWLGKRGGVGS 738 GKG +RL K + + F+ + LT +AG+ + R S+N + K G G Sbjct: 666 GKGKSIIRLD--KKDKLKFIELFRANQELTL--NAGKRFIRIDSKNIETYYSYKPSGGGV 721 Query: 739 LVPKGFPRSGK 749 L+P+GF + K Sbjct: 722 LLPQGFRKITK 732 >gi|310639479|ref|YP_003944237.1| DNA gyrase, a subunit [Paenibacillus polymyxa SC2] gi|309244429|gb|ADO53996.1| DNA gyrase, A subunit [Paenibacillus polymyxa SC2] Length = 854 Score = 432 bits (1111), Expect = e-118, Method: Compositional matrix adjust. Identities = 257/690 (37%), Positives = 413/690 (59%), Gaps = 42/690 (6%) Query: 26 LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85 + E ++ YA+S I RA+PD+RDG KPVHRRI++AMSE+G+ +KKSARIVGEVIGK Sbjct: 18 MRESFMDYAMSIIVSRALPDVRDGLKPVHRRILYAMSELGMSPDKPYKKSARIVGEVIGK 77 Query: 86 LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145 HPHGD +VYD++VR+AQ F RY L+ G GNFG++DGD AAA RYTEAR++++A +L+ Sbjct: 78 YHPHGDTAVYDTMVRMAQDFSLRYMLVDGHGNFGSVDGDMAAAMRYTEARLSKIAMEMLR 137 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 ++++ VDF Y+ E++EPVV P+++PNLL NG GIAVGMAT+IP HN+ E+ + A Sbjct: 138 DLNKETVDFMPNYDGEENEPVVLPARYPNLLVNGVGGIAVGMATNIPPHNLGEVIDGVQA 197 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265 LI+NP+I+ +L++YI GPDFPT G I+ R I ++Y+ GRG +RA+ +EE+G + Sbjct: 198 LIENPDITPMELMDYIQGPDFPTAGYIL-GRSGIRQAYQTGRGSVTMRAKTTIEEIGNKA 256 Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325 I+V E+PYQV K+RL+EKIAEL+ KRI + D+RDES ++ R ++P+++ Sbjct: 257 R-IIVHELPYQVNKARLVEKIAELVRDKRIEGITDLRDESDRTGMRIVIELRRDVNPNVV 315 Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385 + ++F + M++ F +NM + + P+++ L +L +L H+ EV+ RR+ F ++ + Sbjct: 316 LNNLFKHTAMQSNFGINMLAI-VNNEPKILNLKDVLYYYLKHQIEVIRRRTEFDLKKAEA 374 Query: 386 RVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVDAILNLRLRSLRKL 442 R IL+GL IA ++DE+I++IR+ + ++ RFSLT Q AIL++RL+ L L Sbjct: 375 RAHILEGLRIALDHLDEVISLIRSSQTAEAAREGLIERFSLTLEQAQAILDMRLQRLTGL 434 Query: 443 EEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEV 502 E +I++E + L+ + + +L + N I+ E+ E+K F+ RRT E+ Sbjct: 435 EREKIENEYNELIQKIMEYREILANEHLVLNIISEELNELKGRFADD-----RRT---EI 486 Query: 503 SRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIA 554 + +++ L + +I +E + + +++ G+I RS K + + K+ D ++ Sbjct: 487 TVGEESILDEDLIPREDVIITVTHTGYIKRLPVTTYRSQKRGGRGVVGMDTKDEDFVEHL 546 Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDI-----VTAFV 607 ++ +L + GK Y + A + LS G I LI + + I + FV Sbjct: 547 FITNSHHHLLFFTDKGKVYRIKAYEIPDLSRTARGTPIINLIQIEQGESINAVIPIEEFV 606 Query: 608 YDSTCKLLVVSSKGNAFIVEESEI--IANTRKGKTFLKVSSEEKMKLVVKVT-GDHVAVV 664 DS L + G I++++ + AN RKG E+ + VK+T G ++ Sbjct: 607 EDSY--LFFATQHG---IIKKTPLDDYANIRKGGLIAINLREDDALIEVKLTDGQQEMII 661 Query: 665 GENRKLLI-FSIDQIPEMSRG----KGVRL 689 G + + I F + M R KG+ L Sbjct: 662 GTAQGMSIRFPESDVRSMGRSATGVKGISL 691 >gi|57168897|ref|ZP_00368027.1| DNA gyrase, A subunit [Campylobacter coli RM2228] gi|305431952|ref|ZP_07401119.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Campylobacter coli JV20] gi|57019733|gb|EAL56419.1| DNA gyrase, A subunit [Campylobacter coli RM2228] gi|304445036|gb|EFM37682.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Campylobacter coli JV20] Length = 855 Score = 432 bits (1111), Expect = e-118, Method: Compositional matrix adjust. Identities = 247/618 (39%), Positives = 389/618 (62%), Gaps = 36/618 (5%) Query: 3 VDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62 ++NI N ++ +++ + + +++ YL Y++S I RA+PD RDG KPVHRRI++AM+ Sbjct: 1 MENIFNKDS----DIELIDIENSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMN 56 Query: 63 EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122 ++G+ +A+KKSARIVG+VIGK HPHGD +VYD+LVR+AQ F RYP I GQGNFG+ID Sbjct: 57 DLGVGSRSAYKKSARIVGDVIGKYHPHGDTAVYDALVRMAQDFSMRYPSIDGQGNFGSID 116 Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182 GD AAA RYTEARMT +AE +L+ +D+D VDF Y++ SEP V P++ PNLL NG+SG Sbjct: 117 GDGAAAMRYTEARMTILAEELLRDIDKDTVDFVPNYDDSMSEPDVLPARVPNLLLNGSSG 176 Query: 183 IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242 IAVGMAT+IP H++ E+ + L L+D+ + S+E L+++I GPDFPTGGII ++ I+E+ Sbjct: 177 IAVGMATNIPPHSLNELVDGLLYLLDHKDASLEDLMQFIKGPDFPTGGIIY-GKKGIIEA 235 Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302 YR GRG ++RA+ +E+ IV+ E+PYQ K+RLIE+IAEL+ K+I + ++R Sbjct: 236 YRTGRGRVKIRAKTHIEKKSNKD-IIVIDELPYQTNKARLIEQIAELVKEKQIEGISEVR 294 Query: 303 DESA-EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361 DES E +R+V+ K ++ ++++ ++F + ME+ F + M + + P++ L +L Sbjct: 295 DESDREGIRVVIELKREAM-SEIVLNNLFKSTTMESTFGVIMLAIH-NKEPKIFSLIELL 352 Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMV 418 +L HR+ V+ RR+ F +Q R IL+GL IA NIDE+IA+I+N + +V Sbjct: 353 NLFLNHRKTVIIRRTIFELQKARARAHILEGLKIALDNIDEVIALIKNSPDNTTARDSLV 412 Query: 419 SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE 478 ++F LTE Q +AIL+++L L LE +I++EL L+ E ++D +L S N I E Sbjct: 413 AKFGLTELQANAILDMKLGRLTGLEREKIENELAELMKEIARLDEILKSETLLENLIRDE 472 Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV 538 ++E+K F D+ R ++ + +I E + V I++RG+I+ + S Sbjct: 473 LKEIKSKF----DVPR----ITQIEDDYDDIDIEDLIPNENMVVTITHRGYIKRVPSKQY 524 Query: 539 DLS--------ALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRG 585 + A+ + D ++ A+T D ++ ++ G K Y +P G S Sbjct: 525 EKQKRGGKGKLAVTTYDDDFIESFFTANTHDTLMFVTDRGQLYWLKVYKIPEG---SRTA 581 Query: 586 HGEAIQLLIDLNHNQDIV 603 G+A+ LI+L ++ I+ Sbjct: 582 KGKAVVNLINLQADEKIM 599 >gi|260778824|ref|ZP_05887716.1| DNA gyrase subunit A [Vibrio coralliilyticus ATCC BAA-450] gi|260604988|gb|EEX31283.1| DNA gyrase subunit A [Vibrio coralliilyticus ATCC BAA-450] Length = 880 Score = 432 bits (1111), Expect = e-118, Method: Compositional matrix adjust. Identities = 275/725 (37%), Positives = 413/725 (56%), Gaps = 64/725 (8%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + V++ L YL YA+S I RA+PD+RDG KPVHRR++ AM+ +G D+ +KKSA Sbjct: 8 ITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSA 67 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG+IDGDSAAA RYTE RM Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVRM 127 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 ++A +L +D++ VD+ Y+ + P V P+K PNLL NG SGIAVGMAT+IP HN+ Sbjct: 128 AKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGASGIAVGMATNIPPHNL 187 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ + LA I+N EI+I++L++YI GPDFPT +I R+ IV++Y+ GRG +R++ Sbjct: 188 TEVIDGCLAYINNEEITIDELMDYIPGPDFPTAALI-SGRKGIVDAYKTGRGKIYMRSKA 246 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFP 315 +E G IVVTEIPYQV K+RLIEKIAEL+ K++ + +RDES +D +RIV+ Sbjct: 247 EIEADKNGKETIVVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIEC 306 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 K ++ ++++ +++ + ++T F +NM L+ G+ PQ+ L +LK ++ HRREV+ RR Sbjct: 307 KRDAVG-EVVLNNLYANTQLQTTFGINMVALNNGQ-PQLFNLKDMLKCFVDHRREVVTRR 364 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR------------ 420 + F ++ R IL+GL +A NIDEII +IR P K +V+R Sbjct: 365 TIFELRKARERAHILEGLALALANIDEIIELIRRAPTPAEAKEGLVARGWDLGNVAAMLE 424 Query: 421 ----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458 + LTE Q AIL+LRL+ L LE +I E LL E Sbjct: 425 RAGTDAARPEWLEPQFGIRDGQYFLTEQQAQAILDLRLQKLTGLEHEKILDEYKQLLEEI 484 Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518 ++ +L S ++ I E+ V++ F + RRT E++ A + +I +E Sbjct: 485 AELMHILASTERLMEVIREELEAVRDGFGDA-----RRT---EITAAIHDIDMEELIARE 536 Query: 519 PITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570 + V +S+ G+++ + + SA KE D ++ L A+T D IL ST G Sbjct: 537 DVVVTLSHEGYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILCFSTRG 596 Query: 571 KAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAF-VYDSTCKLLVVSSKGNAFIVE 627 K Y L L S G+ I ++ L N+ I V + + + + + G+ + + Sbjct: 597 KTYRLKVYQLPQASRTARGKPIVNILPLEENERITAILPVSEFSPEKFIFMATGDGTVKK 656 Query: 628 ES-EIIANTRKGKTFLKVSSEEKMKLVVKVT-GDH-VAVVGENRKLLIFSIDQIPEMSR- 683 S + AN R E+ + V +T GD + + + K++ FS D++ M R Sbjct: 657 TSLDQFANVRSNGLIAVNLREDDSLIGVDITDGDSDIMLFSKAGKVVRFSEDKVRAMGRT 716 Query: 684 GKGVR 688 GVR Sbjct: 717 AAGVR 721 >gi|224532519|ref|ZP_03673144.1| DNA gyrase, A subunit [Borrelia burgdorferi WI91-23] gi|224512591|gb|EEF82967.1| DNA gyrase, A subunit [Borrelia burgdorferi WI91-23] Length = 662 Score = 432 bits (1111), Expect = e-118, Method: Compositional matrix adjust. Identities = 252/658 (38%), Positives = 399/658 (60%), Gaps = 38/658 (5%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 +E + V + ++ YL YA+S I RA+PD+RDG KPVHRRI+++M EMGL AFK Sbjct: 7 KEQILNVRIEDEIKTSYLNYAMSVIVSRALPDVRDGLKPVHRRILYSMYEMGLRSDKAFK 66 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 K+ RIVG+V+GK HPHGDQS+YD+LVRLAQ F RYP+I GQGNFG+IDGD AA RYTE Sbjct: 67 KAGRIVGDVLGKYHPHGDQSIYDALVRLAQDFSLRYPVIRGQGNFGSIDGDPPAAMRYTE 126 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 A+M ++ E I++ +D++ V+F+ Y++ SEP + PS FP LL NG+SGIAVGMAT++ Sbjct: 127 AKMEKITEYIVKDIDKETVNFKSNYDDSLSEPEIMPSSFPFLLVNGSSGIAVGMATNMAP 186 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN++EIC+A + ++DN SI LL+ + GPDFPT G IV + ++++++Y+ G+G +R Sbjct: 187 HNLREICDAIVYMLDNENASIFDLLKIVKGPDFPTFGEIVYN-DNLIKAYKTGKGSVVIR 245 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIV 312 AR+ +EE I+VTEIPY V KS L+ K+A L +++ L DIRDES E +RIV Sbjct: 246 ARYHIEERAEDRNAIIVTEIPYTVNKSALLMKVALLAKEEKLEGLLDIRDESDREGIRIV 305 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 L K R DP ++M ++ ++ + F +N N+ + +P+ + L+ +L E++ HR+ ++ Sbjct: 306 LEVK-RGFDPHVIMNLLYEYTEFKKHFSIN-NLALVNGIPKQLNLEELLFEFIEHRKNII 363 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVD 429 RR F ++ + +L+GL IA NIDE+I II++ K +VS F L+E Q + Sbjct: 364 ERRIEFDLRKAKEKAHVLEGLNIALNNIDEVIKIIKSSKLAKDAKERLVSNFGLSEIQAN 423 Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAE-KEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488 ++L++RL+ L LE ++++ EL+ LL+ K+ D LLN +R + I + Sbjct: 424 SVLDMRLQKLTALEIFKLEEELNILLSLIKDYEDILLNP-----------VRIINIIREE 472 Query: 489 STDLG-----RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD---- 539 + +LG RRT K ++ M +KE I V+++ +G+++ L + Sbjct: 473 TINLGLKFGDERRTKIIYDEEVLKTSMSDLM-QKENIVVMLTKKGFLKRLSQNEYKLQGT 531 Query: 540 ----LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLL 593 LS+ +GD + IAL +T D + ++S +GK Y + A + S G+ I L Sbjct: 532 GGKGLSSFDLNDGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRASKGQNISEL 591 Query: 594 IDLNHNQDIVT---AFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE 648 I+L ++I+T + LL+ ++ G E ++ A +G +K++ ++ Sbjct: 592 INLGDQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLNDKD 649 >gi|31323275|gb|AAP43927.1| DNA gyrase subunit A [Bacillus anthracis] gi|31323279|gb|AAP43928.1| DNA gyrase subunit A [Bacillus cereus] Length = 742 Score = 432 bits (1111), Expect = e-118, Method: Compositional matrix adjust. Identities = 253/704 (35%), Positives = 416/704 (59%), Gaps = 50/704 (7%) Query: 9 SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68 S+ + ++ +++ + +L YA+S I RA+PD+RDG KPVHRR+++AM+++G+ Sbjct: 2 SDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 61 Query: 69 GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128 A+KKSARIVGEVIGK HPHGD +VY+++VR+AQ F QRY L+ G GNFG++DGDSAAA Sbjct: 62 DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 121 Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188 RYTEARM++++ +++ + ++ +D++D Y+ + EP+V P++FPNLL NGT+GIAVGMA Sbjct: 122 MRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMA 181 Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248 T+IP H + E+ + LAL NP+I+I +L+E I GPDFPT G+I+ R I +Y GRG Sbjct: 182 TNIPPHQLGEVIDGVLALSHNPDITIAELMECIPGPDFPTAGLIL-GRSGIRRAYETGRG 240 Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308 +RA+ +EE G I+VTE+PYQV K+RLIEKIAEL+ K+I + D+RDES + Sbjct: 241 SIILRAKVEIEEKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRN 300 Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368 ++ R + ++L+ +++ + ++T F +NM L G PQV+ L L +L H+ Sbjct: 301 GMRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGE-PQVLNLKQNLYHYLEHQ 359 Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTE 425 + V+ RR+++ ++ + R IL+GL IA ++DE+I +IR+ K ++ RF L+E Sbjct: 360 KVVIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTAEIAKQGLMERFGLSE 419 Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485 Q AIL++RL+ L LE +I+ E +L+ ++ ++L ++ I E+ EVKE Sbjct: 420 KQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIAELKAILADEEKVLEIIREELTEVKER 479 Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSLKSHSVD----- 539 F+ +RRT E++ +++ + +I ++ I + +++ G+I+ L + + Sbjct: 480 FND-----KRRT---EITIGGMESIEDEDLIPEQNIAITLTHNGYIKRLPASTYKTQNRG 531 Query: 540 ---LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLL 581 + + + D ++ L T D IL + GK Y +P NLL Sbjct: 532 GRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEIPEYSRTAKGIPIINLL 591 Query: 582 SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR-KGKT 640 G GE I +I + D F++ +T + + + ++F AN R G Sbjct: 592 -GVDKGEWINAIIPIREFGD--DEFLFFTTKQGISKRTPLSSF--------ANIRTNGLI 640 Query: 641 FLKVSSEEKMKLVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSR 683 + + E+++ V +GD +VG + +LI F+ + M R Sbjct: 641 AISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGR 684 >gi|237752402|ref|ZP_04582882.1| DNA gyrase, subunit A (gyrA) [Helicobacter winghamensis ATCC BAA-430] gi|229375891|gb|EEO25982.1| DNA gyrase, subunit A (gyrA) [Helicobacter winghamensis ATCC BAA-430] Length = 825 Score = 432 bits (1111), Expect = e-118, Method: Compositional matrix adjust. Identities = 282/768 (36%), Positives = 441/768 (57%), Gaps = 53/768 (6%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 ++++ V++ +++E YL Y++S I RA+PD RDG KPVHRRI++AM E+G+ A+KK Sbjct: 10 QDIQNVNIEDSIKESYLDYSMSVIIGRALPDARDGLKPVHRRILYAMYELGVTSRVAYKK 69 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 SARIVG+VIGK HPHGD +VYD+LVR+AQ F R L+ GQGNFG+IDGDSAAA RYTEA Sbjct: 70 SARIVGDVIGKYHPHGDTAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDSAAAMRYTEA 129 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 RMTQ AE +L+ +D+D VDF Y++ EP + PS+ PNLL NG++GIAVGMAT+IP H Sbjct: 130 RMTQAAEEVLRDIDKDTVDFLSNYDDTLQEPDILPSRLPNLLINGSNGIAVGMATNIPPH 189 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 EI +A + LIDNP+ S++++L+++ GPDFPTGGII + I E+Y GRG ++RA Sbjct: 190 RTDEIIDALVYLIDNPKASLDEILQFVEGPDFPTGGIIY-GKSGIREAYESGRGRIKIRA 248 Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVL 313 + +E+ + IV+ EIPYQV K+RL+E+IAEL K I + ++RDES E +R+V+ Sbjct: 249 KTHIEKT-KTKDIIVIDEIPYQVNKARLVEQIAELAKEKVIDGIAEVRDESDREGIRVVI 307 Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373 K ++ ++++ +F + ME+ F + + + + P+V L +L +L+HR+ V+ Sbjct: 308 ELKREAM-SEIVLNHLFKSTPMESTFGIILLAI-YNKEPKVFTLLELLDLFLSHRKSVVI 365 Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVDA 430 RR+ F ++ R IL+GL IA NID I+A+IR PK ++++FSL+E Q A Sbjct: 366 RRTIFELEKAKARAHILEGLRIALENIDAIVALIRASSDPKVAKEGLITQFSLSEIQAQA 425 Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490 IL++RL+ L LE +I++E LL E E + ++L S I E+ E+KE FS Sbjct: 426 ILDMRLQRLTGLERDKIENEYQALLKEIEHLSAILRSESLLNGIIKEELLEIKEKFST-- 483 Query: 491 DLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549 +R TT E D ++ + +I EP+ V +S+RG+++ + + + G Sbjct: 484 ---KRLTTIEE----DYESIDVEDLIPNEPVVVTMSHRGYVKRVPVRTYEKQ----NRGG 532 Query: 550 SLKIALHAH------------TTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLID 595 KI+ + H T D IL ++ G+ Y L + S G+A+ LI+ Sbjct: 533 KGKISANTHDDDFIESFFVSDTHDTILFITDKGQLYWLKVYKIPEASRTAIGKAVVNLIN 592 Query: 596 LNHNQDI---VTAFVYDSTCKLLVVSSKGNAFIVEESEI--IANTRK-GKTFLKVSSEEK 649 L ++ I +T ++S L + G I++ + + N R G + + + Sbjct: 593 LAPDEKIMATITTKDFNSNKSLAFFTKNG---IIKRTNLSEFKNIRSVGVRAINLDENDA 649 Query: 650 MKLVVKVTGD--HVAVVGENRKLLIFSIDQIPEMSR-GKGV---RLQSYKDGGISDVICF 703 + ++ D + VV + F +D + E+ R +GV + + KD I + Sbjct: 650 LVTAKIISSDIKEILVVTYEGMCVRFGVDNVREIGRVARGVTAIKFKMPKDYVIGATVVA 709 Query: 704 KICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751 E + + G N+ + RGG G + K P++GK + Sbjct: 710 SENEEILSVSEKGIGKRTEVNEY--RITNRGGKGVIAMKLTPKTGKLV 755 >gi|216263471|ref|ZP_03435466.1| DNA gyrase, A subunit [Borrelia afzelii ACA-1] gi|215980315|gb|EEC21136.1| DNA gyrase, A subunit [Borrelia afzelii ACA-1] Length = 810 Score = 432 bits (1111), Expect = e-118, Method: Compositional matrix adjust. Identities = 250/632 (39%), Positives = 387/632 (61%), Gaps = 40/632 (6%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 +E + V + ++ YL YA+S I RA+PD+RDG KPVHRRI+++M EMGL AFK Sbjct: 7 KEQILNVKIEDEIKTSYLNYAMSVIVSRALPDVRDGLKPVHRRILYSMYEMGLRSDKAFK 66 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 K+ RIVG+V+GK HPHGDQS+YD+LVRLAQ F RYP+I GQGNFG+IDGD AA RYTE Sbjct: 67 KAGRIVGDVLGKYHPHGDQSIYDALVRLAQDFSLRYPVIRGQGNFGSIDGDPPAAMRYTE 126 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 A+M ++AE I++ +D++ V+F+ Y++ SEP + PS FP LL NG+SGIAVGMAT++ Sbjct: 127 AKMARIAEYIVKDIDKETVNFKSNYDDSLSEPEIMPSSFPFLLVNGSSGIAVGMATNMAP 186 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN++EIC+A + ++DN SI LL+ + GPDFPT G IV + +++V++Y+ G+G +R Sbjct: 187 HNLREICDAIVYMLDNENASIFDLLKIVKGPDFPTFGEIVYN-DNLVKAYKTGKGSVIIR 245 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIV 312 AR+ +EE I+VTEIPY V KS L+ K+A L +++ L DIRDES E +RIV Sbjct: 246 ARYHIEERTEDRNAIIVTEIPYTVNKSALLMKVAFLAKEEKLEGLLDIRDESDREGIRIV 305 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 L K R DP ++M ++ ++ + F +N N+ + +P+ + L+ +L E++ HR+ ++ Sbjct: 306 LEVK-RGFDPHVIMNLLYEYTEFKKHFSIN-NLALVDGIPKQLNLEELLFEFIEHRKNII 363 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVD 429 RR F ++ + +L+GL IA NIDE+I II++ K +V+ F L+E Q + Sbjct: 364 ERRIEFDLRKAKEKAHVLEGLNIALNNIDEVIKIIKSSKLAKDAKERLVANFGLSEIQAN 423 Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAE-KEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488 ++L+++L+ L LE ++++ EL+ LL+ K+ D LLN +R + I + Sbjct: 424 SVLDMKLQKLTALEIFKLEEELNVLLSLIKDYEDILLNP-----------VRIINIIREE 472 Query: 489 STDLG-----RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD---- 539 + +LG RRT K ++ M +KE I V+++ +G+++ L + Sbjct: 473 TINLGLKFGDERRTKIIYDEEVLKTSMSDLM-QKENIVVMLTKKGFLKRLSQNEYKLQGT 531 Query: 540 ----LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLL 593 LS+ +GD + IAL ++ D + ++S +GK Y + A + S G+ I L Sbjct: 532 GGKGLSSFDLNDGDEIAIALCVNSHDYLFMISNEGKLYLINAYEIKDSSRASKGQNISEL 591 Query: 594 IDLNHNQDIVTA-----FVYDSTCKLLVVSSK 620 I+L ++I+T F DS L S K Sbjct: 592 INLGAQEEILTIKNSKDFTDDSYLLLTTASGK 623 >gi|225862063|ref|YP_002747441.1| DNA gyrase, A subunit [Bacillus cereus 03BB102] gi|225790276|gb|ACO30493.1| DNA gyrase, A subunit [Bacillus cereus 03BB102] Length = 823 Score = 432 bits (1110), Expect = e-118, Method: Compositional matrix adjust. Identities = 253/704 (35%), Positives = 415/704 (58%), Gaps = 50/704 (7%) Query: 9 SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68 S+ + ++ +++ + +L YA+S I RA+PD+RDG KPVHRR+++AM+++G+ Sbjct: 2 SDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 61 Query: 69 GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128 A+KKSARIVGEVIGK HPHGD +VY+++VR+AQ F QRY L+ G GNFG++DGDSAAA Sbjct: 62 DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 121 Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188 RYTEARM++++ +++ + ++ +D++D Y+ + EP+V P++FPNLL NGT+GIAVGMA Sbjct: 122 MRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMA 181 Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248 T+IP H + E+ + LAL NP+I+I +L+E I GPDFPT G+I+ R I +Y GRG Sbjct: 182 TNIPPHQLGEVIDGVLALSHNPDITIAELMECIPGPDFPTAGLIL-GRSGIRRAYETGRG 240 Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308 +RA+ +EE G I+VTE+PYQV K+RLIEKIAEL+ K+I + D+RDES + Sbjct: 241 SIILRAKVEIEEKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRN 300 Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368 ++ R + ++L+ +++ + ++T F +NM L G PQV+ L L +L H+ Sbjct: 301 GMRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGE-PQVLNLKQNLYHYLEHQ 359 Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTE 425 + V+ RR+++ ++ + R IL+GL IA ++DE+I +IR+ K ++ RF L+E Sbjct: 360 KVVIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTAEIAKQGLMERFGLSE 419 Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485 Q AIL++RL+ L LE +I+ E L+ ++ ++L ++ I E+ EVKE Sbjct: 420 KQAQAILDMRLQRLTGLEREKIEQEYQELMKLIAELKAILADEEKVLEIIREELTEVKER 479 Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSLKSHSVD----- 539 F+ +RRT E++ +++ + +I ++ I + +++ G+I+ L + + Sbjct: 480 FND-----KRRT---EITIGGMESIEDEDLIPEQNIAITLTHNGYIKRLPASTYKTQNRG 531 Query: 540 ---LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLL 581 + + + D ++ L T D IL + GK Y +P NLL Sbjct: 532 GRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEIPEYSRTAKGIPIINLL 591 Query: 582 SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR-KGKT 640 G GE I +I + D F++ +T + + + ++F AN R G Sbjct: 592 -GVDKGEWINAIIPIREFGD--DEFLFFTTKQGISKRTPLSSF--------ANIRTNGLI 640 Query: 641 FLKVSSEEKMKLVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSR 683 + + E+++ V +GD +VG + +LI F+ + M R Sbjct: 641 AISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGR 684 >gi|169825627|ref|YP_001695785.1| DNA gyrase subunit A [Lysinibacillus sphaericus C3-41] gi|168990115|gb|ACA37655.1| DNA gyrase subunit A [Lysinibacillus sphaericus C3-41] Length = 821 Score = 432 bits (1110), Expect = e-118, Method: Compositional matrix adjust. Identities = 272/751 (36%), Positives = 433/751 (57%), Gaps = 52/751 (6%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 VK +++ +E +L YA+S I RA+PD+RDG KPVHRRI++ M E+G +KKSA Sbjct: 9 VKGINITEEIETSFLDYAMSVIVSRALPDVRDGLKPVHRRILYGMQELGNTADKPYKKSA 68 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 RIVG+V+GK HPHGD S+YD++VR+AQ F RY L+ G GNFG++DGD AAA RYTE+RM Sbjct: 69 RIVGDVMGKYHPHGDSSIYDAMVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAMRYTESRM 128 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 +++A +L+ +++D +D+ D Y+ + EP+V PS++PNLL NG +GIAVGMAT+IP H++ Sbjct: 129 SKIAMEMLRDINKDTIDYTDNYDGSEKEPIVLPSRYPNLLVNGAAGIAVGMATNIPPHHL 188 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E +A +AL +NP I+ E+L+E I GPDFPTGG+I+ R I +Y GRG +RA+ Sbjct: 189 GETIDAVIALSENPAITTEELMEIIPGPDFPTGGLIL-GRSGIRRAYESGRGSIIIRAKV 247 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316 +E+ G I+V E+PYQV K++LIEKIAEL+ K+I + ++RDES V+ Sbjct: 248 EIEQKANGKETILVHELPYQVNKAKLIEKIAELVRDKKIDGITNLRDESDRRGMRVVIEV 307 Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376 + + ++++ +++ + M++ F +NM L G+ P+V+ L +L +L H++ ++ RR+ Sbjct: 308 RKDANANVVLNNLYKQTAMQSSFGINMLSLVNGQ-PKVLGLKEMLYHYLEHQKVIIRRRT 366 Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAILN 433 F ++ + R IL+GL IA +IDEIIAIIR ++ KP ++ RF+L+E Q AIL+ Sbjct: 367 EFDLRKAEDRAHILEGLRIALDHIDEIIAIIRGSRSGEEAKPQLMERFNLSERQAQAILD 426 Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493 +RL L LE +I++E L ++ ++L + + I EI E+K+ +S + Sbjct: 427 MRLVRLSGLEREKIEAEYQELQVLIAELKAILADEAKIVDIIRTEILELKDRYSDT---- 482 Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DLSALHF 545 RRT S + + +I E V +++ G+I+ L +++ + + Sbjct: 483 -RRTEIT--SGGIEMIEDEDLIPVENSVVTLTHNGYIKRLAANTYRSQKRGGRGVQGMGT 539 Query: 546 KEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGR-GHGEAIQLLIDLNHN 599 E D ++ ++ T D IL ++ G K Y +P GR G I L++++ Sbjct: 540 NEDDFVEHLMNTSTHDTILFFTSKGKVFRAKGYEIPE----YGRTAKGLPIVNLLNIDKG 595 Query: 600 QDIVTAFV----YDSTCKLLVVSSKGNAFIVEESEI--IANTRKGKTFLKVSSEEKMKLV 653 + VTA + +D + + G I + + + AN R + +S E L+ Sbjct: 596 EK-VTAMIRVGSFDEDAYFIFTTKTG---ITKRTPVSQFANIRT-NGLIAISLREDDDLI 650 Query: 654 -VKVT-GDHVAVVGENRKLLI-FSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEG- 708 V++T GD ++G +L+ F D I M R GVR +DG +V+ +I E Sbjct: 651 SVRLTDGDKQIIIGTRDGMLVRFQEDDIRSMGRTAGGVRGIKLRDG--DEVVGMEIVEPG 708 Query: 709 --LTWIDSAGRSYNRSENDLLGWLGKRGGVG 737 + + G SE+D L RGGVG Sbjct: 709 QEILVVTEKGYGKRTSEDDY--RLQSRGGVG 737 >gi|317010917|gb|ADU84664.1| DNA gyrase subunit A [Helicobacter pylori SouthAfrica7] Length = 830 Score = 432 bits (1110), Expect = e-118, Method: Compositional matrix adjust. Identities = 264/698 (37%), Positives = 413/698 (59%), Gaps = 40/698 (5%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 +N+ V + ++EE YLAY++S I RA+PD RDG KPVHRRI++AM+E+GL A+KK Sbjct: 10 KNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMNELGLTSKVAYKK 69 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 SARIVG+VIGK HPHGD +VYD+LVR+AQ F R L+ GQGNFG+IDGD+AAA RYTEA Sbjct: 70 SARIVGDVIGKYHPHGDSAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDNAAAMRYTEA 129 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 RMT+ +E IL+ +D+D +DF Y++ EP + PS+ PNLL NG +GIAVGMATSIP H Sbjct: 130 RMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGIAVGMATSIPPH 189 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 + EI +A + +++NP ++++LE+IIGPDFPTGGII + IVE+Y+ GRG +VRA Sbjct: 190 RIDEIIDALVHVLENPNAELDEVLEFIIGPDFPTGGIIY-GKAGIVEAYKTGRGRVKVRA 248 Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVL 313 + VE+ + IV+ E+P+Q K++L+E+I++L K+I + ++RDES E +R+V+ Sbjct: 249 KVHVEKT-KHKEVIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRDESDREGIRVVI 307 Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373 K ++ ++++ ++ L+ MET F + + + + P++ L +L +L HR+ ++ Sbjct: 308 ELKRDAM-SEIVLNHLYKLTAMETTFSIILLAI-YNKEPKIFTLLELLHLFLNHRKTIII 365 Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVDA 430 RR+ F ++ R IL+G LIA NIDEI+ +I+ + P K ++ RF+L+E Q A Sbjct: 366 RRTIFELEKAKARAHILEGYLIALDNIDEIVQLIKTSESPEMAKNALMERFTLSEIQSKA 425 Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490 IL +RL+ L LE +IK E NLL E+++ +L S + + E+ EVKE FS Sbjct: 426 ILEMRLQRLTGLERDKIKEEYQNLLELIEELNGILKSEDRLNGVVKTELLEVKEQFSSP- 484 Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI---------RSLKSHSVDLS 541 RRT E+ + + + +I EP+ V +S +G++ R + LS Sbjct: 485 ----RRT---EIQESYENIDIEDLIANEPMVVSMSYKGYVKRVDLKVYERQNRGGKGKLS 537 Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDL 596 + E D ++ A+T D +L ++ G K Y +P N ++ G+AI LI L Sbjct: 538 GSTY-EDDFIESFFVANTHDILLFITNKGQLYHLKVYKIPEANRIA---MGKAIVNLISL 593 Query: 597 NHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--K 651 ++ I+ + L + G SE +N G + + ++++ Sbjct: 594 APDEKIMATLSTKDFSDERSLAFFTKNGVVKRTNLSEFGSNRSCGIRAIVLDEDDELVSA 653 Query: 652 LVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRG-KGVR 688 +V H+ + + + F ++ + EM R GVR Sbjct: 654 KIVDKNAKHLLIASHSGTFIKFPLENVREMGRSTHGVR 691 >gi|288554612|ref|YP_003426547.1| DNA gyrase subunit A [Bacillus pseudofirmus OF4] gi|288545772|gb|ADC49655.1| DNA gyrase subunit A [Bacillus pseudofirmus OF4] Length = 855 Score = 432 bits (1110), Expect = e-118, Method: Compositional matrix adjust. Identities = 249/688 (36%), Positives = 411/688 (59%), Gaps = 30/688 (4%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 VK +++ ++ ++ YA+S I RA+PD RDG KPVHRRI++AM+E+G+ A+KKSA Sbjct: 9 VKEINISQEMKSSFMDYAMSVIVSRALPDARDGLKPVHRRILYAMNELGMTSDKAYKKSA 68 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 RIVGEVIGK HPHGD +VY+++VR+AQ F RY L+ G GNFG+IDGD+AAA RYTEA+M Sbjct: 69 RIVGEVIGKYHPHGDSAVYETMVRMAQDFSYRYMLVDGHGNFGSIDGDAAAAMRYTEAKM 128 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 ++++ +L+ +++D +D++D Y+ + EP+V P++FPNLL NG SGIAVGMAT+IP H + Sbjct: 129 SKISMELLRDINKDTIDYQDNYDGSEREPIVMPARFPNLLVNGASGIAVGMATNIPPHQL 188 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ +A LAL NP+ISI +L+EYI GPDFPTG I+ R I ++Y+ GRG +RA+ Sbjct: 189 GEVIDAVLALSKNPDISIPELMEYIPGPDFPTGAEIL-GRSGIRKAYQTGRGSITLRAQT 247 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316 +EE +G I+V+E+PYQV K++LIEKIAEL+ K+I + D+RDES + ++ Sbjct: 248 EIEEY-KGKPRILVSELPYQVNKAKLIEKIAELVRDKKIDGITDLRDESDRNGMRIVIEL 306 Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376 R + ++L+ +++ + ++T F +N+ L G+ P+V+ L L+ +L H+ +V+ RR+ Sbjct: 307 RRDANANVLLNNLYKQTALQTSFGINLLALVEGQ-PKVLTLKECLEHYLGHQVQVIRRRT 365 Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVDAILN 433 +F ++ + R IL+GL IA ++DE+I++IR+ + ++ +FSL+ Q AIL+ Sbjct: 366 AFELRKAEARAHILEGLRIALDHLDEVISLIRSSQTTEIARNGLMEQFSLSYEQAQAILD 425 Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493 +RL+ L LE +I++E L+A+ ++ ++L G++ I E+ EVKE F+ Sbjct: 426 MRLQRLTGLERDKIENEYKELIAKIAELKAILADGEKVLEIIREELIEVKEKFNDE---- 481 Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHF 545 RRT +S + + +I ++ + + +++ G+I RS + + + Sbjct: 482 -RRTV---ISMNEDHLEDEDLIPRQNVVITLTHHGYIKRMPISTYRSQRRGGKGIQGMGT 537 Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIV 603 + D ++ ++ IL + GK Y L + L G I L+ + ++ I Sbjct: 538 NDDDFMQHLFTTNSHHTILFFTNKGKVYRLKGYEIPELGRTAKGIPIINLLQIEQDETIS 597 Query: 604 TAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF-LKVSSEEKMKLVVKVTGD 659 T +D L ++ G A + S AN R+G F + + ++++ V G Sbjct: 598 TVIPIEEFDDNSYLFFLTKHGIAKRTQLSS-FANIRRGGLFAITLRGDDELHGVRLTDGG 656 Query: 660 HVAVVGENRKLLI-FSIDQIPEMSRGKG 686 ++G + I F + M R G Sbjct: 657 QEVIIGTKHGMAIRFHETDVRLMGRTAG 684 >gi|212212978|ref|YP_002303914.1| DNA gyrase subunit A [Coxiella burnetii CbuG_Q212] gi|212011388|gb|ACJ18769.1| DNA gyrase subunit A [Coxiella burnetii CbuG_Q212] Length = 850 Score = 432 bits (1110), Expect = e-118, Method: Compositional matrix adjust. Identities = 283/784 (36%), Positives = 431/784 (54%), Gaps = 71/784 (9%) Query: 26 LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85 L++ YL YA+S I RA+PD+RDG KPVHRR+++AMSE+G D+ KKSARIVG+VIGK Sbjct: 19 LKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSELGNDWNKPNKKSARIVGDVIGK 78 Query: 86 LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145 HPHGD +VYD++VR+AQPF RY LI GQGNFG++DGD+ AA RYTE R+++ A ++ Sbjct: 79 YHPHGDVAVYDTIVRMAQPFSLRYLLIDGQGNFGSVDGDAPAAMRYTEIRLSRFAHALMA 138 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 +D++ VDF Y+E + P V P++ PNLL NG SGIAVGMAT+IP HN+ EI A LA Sbjct: 139 DLDKETVDFAPNYDETEMAPAVLPTRVPNLLINGASGIAVGMATNIPPHNLNEIINATLA 198 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265 LI+NP++++E+L+ YI GPDFPT GII R IV++Y+ GRG VRA+ +E G Sbjct: 199 LIENPDLNVEELMRYIPGPDFPTAGII-NGRNGIVQAYKTGRGRIYVRAKTEIETTKSGR 257 Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325 IVV E+PYQV K+RL+EKI EL+ KRI + +RDES + ++ +R + +++ Sbjct: 258 SLIVVHELPYQVNKARLLEKIGELVREKRIEGISGLRDESDKRGMRMVIEVSRGDNAEIV 317 Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385 + +++ + ++T F +NM L G+ P+V+ L +L +L HRREV+ RR+ F ++ Sbjct: 318 LNNLYAQTQLQTVFGINMVALDNGQ-PRVLNLKQLLSAFLQHRREVVTRRTLFELRKARE 376 Query: 386 RVEILKGLLIAYLNIDEIIAIIRNEDKP------------KPVMVSRF------------ 421 R IL+GL +A NIDE+IA+I+ P KP V+ F Sbjct: 377 RAHILEGLGVALANIDEVIALIKKAKTPAIAKENLLAQAWKPGAVADFLKKAGSDRTRPD 436 Query: 422 -------------SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSG 468 L+ Q AIL+LRL L LE +I+ E ++ + E++ ++++ Sbjct: 437 DLAAEFGLRKEGYYLSPAQAQAILDLRLHRLTGLETDKIREEYIAIIDKIEELIAIVSDP 496 Query: 469 KQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATL-QQAMIEKEPITVVISNR 527 + I E+ VKE F RRT + D + L + +I +E V +S+ Sbjct: 497 DKLHEVIREELIAVKEQFGDE-----RRTVIID----DHSDLTHEDLIPEEHRVVTLSHE 547 Query: 528 GWIR--SLKSHSVDLS------ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN 579 G+I+ SL S+ A KE D +K L A++ D IL ST GK Y L Sbjct: 548 GYIKSQSLSSYQAQHRGGRGKLAAAVKEQDFVKNILVANSHDTILCFSTQGKVYWLKVYQ 607 Query: 580 LLSGR--GHGEAIQLLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIAN 634 + G G I L+ L ++ I YD + + + +++G V +E Sbjct: 608 VPQGSRIARGRPIINLLPLVKDEQISAILPIRAYDGSHFVFMATAQGAIKKVSLAEFSQP 667 Query: 635 TRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSRG----KGVRL 689 KGK L ++ +++ V G + +V + K + F ++ EM R +G++L Sbjct: 668 RTKGKIALALNEGDRLVGVDITDGKKEIMLVTDAGKAIRFHEKEVREMGRSARGVRGIKL 727 Query: 690 QSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGK 749 ++ ++ + +I K + G + +D RGG G + + R+GK Sbjct: 728 KAKQN--VIALIVVKPKGNILTATVHGYGQRTALDDYRST--GRGGQGVMAIRINSRNGK 783 Query: 750 FLSS 753 +S+ Sbjct: 784 VVSA 787 >gi|51598689|ref|YP_072877.1| DNA gyrase, subunit A [Borrelia garinii PBi] gi|51573260|gb|AAU07285.1| DNA gyrase, subunit A [Borrelia garinii PBi] Length = 810 Score = 432 bits (1110), Expect = e-118, Method: Compositional matrix adjust. Identities = 253/655 (38%), Positives = 399/655 (60%), Gaps = 32/655 (4%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 +E + + + ++ YL YA+S I RA+PD+RDG KPVHRRI+++M E+GL AFK Sbjct: 7 KEQILNIKIEDEIKTSYLNYAMSVIVSRALPDVRDGLKPVHRRILYSMYELGLRSDKAFK 66 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 K+ RIVG+V+GK HPHGDQS+YD+LVRLAQ F RYP+I GQGNFG+IDGD AA RYTE Sbjct: 67 KAGRIVGDVLGKYHPHGDQSIYDALVRLAQDFSLRYPVIRGQGNFGSIDGDPPAAMRYTE 126 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 A+M ++ E I++ +D++ V+F+ Y++ SEP + PS FP LL NG+SGIAVGMAT++ Sbjct: 127 AKMERITEYIVKDIDKETVNFKSNYDDSLSEPEIMPSSFPFLLVNGSSGIAVGMATNMAP 186 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN++EIC+A + ++DN SI LL+ + GPDFPT G IV + ++++++Y+ G+G +R Sbjct: 187 HNLREICDAIVYMLDNENASIFDLLKIVKGPDFPTFGEIVYN-DNLIKAYKTGKGSVVIR 245 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIV 312 AR+ +EE G I+VTEIPY V KS L+ K+A L +++ L DIRDES E +RIV Sbjct: 246 ARYHIEERIEGRNAIIVTEIPYTVNKSALLMKVALLAKEEKLEGLLDIRDESDREGIRIV 305 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 L K R DP ++M ++ ++ + F +N N+ + +P+ + L+ +L E++ HR+ V+ Sbjct: 306 LEVK-RGFDPHVIMNLLYEYTEFKKHFSIN-NLALVDGIPKQLNLEELLFEFIEHRKNVI 363 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVD 429 RR F ++ + +L+GL IA NIDE+I II++ K +V+ F L+E Q + Sbjct: 364 ERRIEFDLRKAKEKAHVLEGLNIALNNIDEVINIIKSSRLAKDARERLVANFGLSEIQAN 423 Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAE-KEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488 ++L+++L+ L LE ++++ EL+ LL+ K+ D LLN + I IRE E + Sbjct: 424 SVLDMKLQKLTALEIFKLEEELNVLLSLIKDYEDILLNPAR-----IINIIRE--ETINL 476 Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD--------L 540 G R T T +++KE I V+++ +G+++ L + L Sbjct: 477 GLKFGDERRTKIIYDEEVLKTSMSDLMQKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGL 536 Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNH 598 S+ +GD + IAL +T D + ++S +GK Y + A + S G+ I LI+L Sbjct: 537 SSFDLNDGDEVAIALCVNTHDYLFMVSNEGKLYLINAYEIKDSSRASKGQNISELINLGD 596 Query: 599 NQDIVT-----AFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE 648 ++I+T F DS LL+ ++ G E ++ A +G +K++ ++ Sbjct: 597 QEEILTIKNSKEFTDDSY--LLLTTASGKIARFESTDFKAVKSRGVIVIKLNDKD 649 >gi|257890534|ref|ZP_05670187.1| DNA gyrase subunit A [Enterococcus faecium 1,231,410] gi|257826894|gb|EEV53520.1| DNA gyrase subunit A [Enterococcus faecium 1,231,410] Length = 823 Score = 432 bits (1110), Expect = e-118, Method: Compositional matrix adjust. Identities = 231/573 (40%), Positives = 359/573 (62%), Gaps = 22/573 (3%) Query: 13 VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72 + EN+ V+L +++ ++ YA+S I RA+PD+RDG KPVHRRI++ M+E+G+ A Sbjct: 5 IRENIHDVNLTSEMKDSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKAH 64 Query: 73 KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132 KKSARIVG+V+GK HPHGD ++Y S+VR+AQPF RY L+ G GNFG++DGD AAA RYT Sbjct: 65 KKSARIVGDVMGKYHPHGDCAIYGSMVRMAQPFSYRYMLVDGHGNFGSVDGDGAAAMRYT 124 Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192 EARM+++A +L+ ++++ VDF+ Y++ + EPVV P++FPNLL NGT+GIAVGMAT+IP Sbjct: 125 EARMSKIATEMLRDINKNTVDFQSNYDDTEKEPVVLPARFPNLLVNGTTGIAVGMATNIP 184 Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252 HN+ E+ A L+DNP+++ +L+E + GPDFPTGG+++ + I +Y G+G V Sbjct: 185 PHNLSEVVAAIDLLMDNPDVTTNELMEVLPGPDFPTGGLVM-GKSGIRRAYETGKGSITV 243 Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRI 311 RA+ + E+ G I+VTE+PY V K++LIE+I+EL KRI + D+RDES+ E +RI Sbjct: 244 RAKVEITEMPNGKERIIVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMRI 303 Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371 V+ + R +++ +++ L+ ++ F NM + G VP+V+ L IL+ ++ H+REV Sbjct: 304 VIDIR-RDASASVILNNLYKLTSLQNSFGFNMLAIEKG-VPKVLSLKQILENYIEHQREV 361 Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQV 428 + RR+ F + + R IL+GL IA +IDEIIAIIR ++D+ K M+ RF L++ Q Sbjct: 362 ITRRTVFEKEKAEARAHILEGLRIALDHIDEIIAIIRGSKSDDEAKATMIERFDLSDRQS 421 Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488 AIL++RLR L LE +I++E LL E + +L ++ I E+ ++ + F Sbjct: 422 QAILDMRLRRLTGLEREKIENEYQELLKLIEDLTDILARPERVTEIIKNELADLNQRFGD 481 Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DL 540 +RRT E+ IT ++N G+I+ L ++ + Sbjct: 482 -----KRRTELLVGEVLSLEDEDLIEEEEIVIT--LTNNGYIKRLANNEFRAQRRGGRGV 534 Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573 + D +K + T D +L + +GK Y Sbjct: 535 QGMGIHNDDFVKNLVSCSTHDTLLFFTNNGKVY 567 >gi|226321065|ref|ZP_03796607.1| DNA gyrase, A subunit [Borrelia burgdorferi 29805] gi|226233475|gb|EEH32214.1| DNA gyrase, A subunit [Borrelia burgdorferi 29805] Length = 810 Score = 432 bits (1110), Expect = e-118, Method: Compositional matrix adjust. Identities = 244/611 (39%), Positives = 379/611 (62%), Gaps = 35/611 (5%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 +E + V + ++ YL YA+S I RA+PD+RDG KPVHRRI+++M EMGL AFK Sbjct: 7 KEQILNVRIEDEIKTSYLNYAMSVIVSRALPDVRDGLKPVHRRILYSMYEMGLRSDKAFK 66 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 K+ RIVG+V+GK HPHGDQS+YD+LVRLAQ F RYP+I GQGNFG+IDGD AA RYTE Sbjct: 67 KAGRIVGDVLGKYHPHGDQSIYDALVRLAQDFSLRYPVIRGQGNFGSIDGDPPAAMRYTE 126 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 A+M ++ E I++ +D++ V+F+ Y++ SEP + PS FP LL NG+SGIAVGMAT++ Sbjct: 127 AKMEKITEYIVKDIDKETVNFKSNYDDSLSEPEIMPSSFPFLLVNGSSGIAVGMATNMAP 186 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN++EIC+A + ++DN SI LL+ + GPDFPT G IV + ++++++Y+ G+G +R Sbjct: 187 HNLREICDAIVYMLDNENASIFDLLKIVKGPDFPTFGEIVYN-DNLIKAYKTGKGSVVIR 245 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIV 312 AR+ +EE I+VTEIPY V KS L+ K+A L +++ L DIRDES E +RIV Sbjct: 246 ARYHIEERAEDRNAIIVTEIPYTVNKSALLMKVALLAKEEKLEGLLDIRDESDREGIRIV 305 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 L K R DP ++M ++ ++ + F +N N+ + +P+ + L+ +L E++ HR+ ++ Sbjct: 306 LEVK-RGFDPHVIMNLLYEYTEFKKHFSIN-NLALVNGIPKQLNLEELLFEFIEHRKNII 363 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVD 429 RR F ++ + +L+GL IA NIDE+I II++ K +VS F L+E Q + Sbjct: 364 ERRIEFDLKKAKEKAHVLEGLNIALNNIDEVIKIIKSSKLAKDAKERLVSSFGLSEIQAN 423 Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAE-KEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488 ++L++RL+ L LE ++++ E + LL+ K+ D LLN +R + I + Sbjct: 424 SVLDMRLQKLTALEIFKLEEEFNILLSLIKDYEDILLNP-----------VRIINIIREE 472 Query: 489 STDLG-----RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD---- 539 + +LG RRT K ++ M +KE I V+++ +G+++ L + Sbjct: 473 TINLGLKFGDERRTKIIYDEEVLKTSMSDLM-QKENIVVMLTKKGFLKRLSQNEYKLQGT 531 Query: 540 ----LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLL 593 LS+ +GD + IAL +T D + ++S +GK Y + A + S G+ I L Sbjct: 532 GGKGLSSFDLNDGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRASKGQNISEL 591 Query: 594 IDLNHNQDIVT 604 I+L ++I+T Sbjct: 592 INLGDQEEILT 602 >gi|298243499|ref|ZP_06967306.1| DNA gyrase, A subunit [Ktedonobacter racemifer DSM 44963] gi|297556553|gb|EFH90417.1| DNA gyrase, A subunit [Ktedonobacter racemifer DSM 44963] Length = 852 Score = 431 bits (1109), Expect = e-118, Method: Compositional matrix adjust. Identities = 278/772 (36%), Positives = 421/772 (54%), Gaps = 59/772 (7%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 N+K V++ + YL Y++S I RA+PD+RDG KPVHRRI++AM +MGL ++K Sbjct: 5 NIKTVNIVEQMTGAYLDYSMSVIVSRALPDVRDGLKPVHRRILYAMEQMGLQSNRTYRKC 64 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 A VGEV+ HPHGD SVY++LVR+AQP+ RYPL+ GQGNFG+ D D AA RYTEA+ Sbjct: 65 AGTVGEVLKSYHPHGDASVYEALVRMAQPWSMRYPLVLGQGNFGSQDDDPPAAMRYTEAK 124 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 M +A+ +L+ +D+D VDF Y+ + EPVVFP++ PNLL NGT+GIAVGMAT+IP HN Sbjct: 125 MAAIADELLRDIDKDTVDFVPNYDNQAKEPVVFPARLPNLLLNGTTGIAVGMATNIPPHN 184 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 + EIC+ + LI+NPE + E L + GPDFPTGG+I + RE I +Y GRG +RAR Sbjct: 185 LHEICDGIIHLIENPEATTEDLARIVRGPDFPTGGLI-QGREGIRNTYANGRGRIVIRAR 243 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLF 314 +EE RG I+ TE+PYQV K+ L++KIAEL KRI + ++RDES + +R+V+ Sbjct: 244 THIEENERGRASIITTELPYQVNKADLVKKIAELARDKRIEGISEVRDESDRQGMRMVVE 303 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K R +P ++ S+F + M++ F NM L + PQ + L L+ ++ HR +V+ R Sbjct: 304 LK-RDANPRSILNSLFKYTAMQSSFNTNMLAL-VDSQPQTLTLKKFLQHYITHREQVITR 361 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR----FSLTENQVDA 430 R+ F ++ + R IL+GL IA N+DE+I IIR + + F + Q A Sbjct: 362 RTQFELRKAEARKHILEGLKIAMDNLDEVINIIRGSRRETAGLAEELQQTFGFSNEQARA 421 Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490 +L++RL SL L+ +++ EL ++L + LL+ + I +++E+KE F + Sbjct: 422 VLDMRLASLAALQRQKVEDELRDVLQHIDYYHKLLSDINEIRGIIMADLKELKEKFGDA- 480 Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DLSA 542 RRT E D + +I E + V ++ +G+I+ L S + ++ Sbjct: 481 ----RRTEIEEGEVRDFK--DEDLIPNEEVVVTLTEKGYIKRLPSGTYRAQRRGGRGVTG 534 Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQ 600 + +E D+++ L HT D +L + G+ + L L S GE + LI + + Sbjct: 535 MATREDDTVRHLLVPHTHDSLLFFTDRGRVFQLRVYELPDTSRTARGEHLINLISIEQRE 594 Query: 601 DIVTAFVY---DSTCKLLVVSS-KGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV 656 VTA VY T LVV++ KG S+ R G + + ++++ + K+ Sbjct: 595 R-VTAIVYVPKGHTHDFLVVATKKGEVKKTAMSDFEVVRRSGLIAMNLEDDDEL-IGAKL 652 Query: 657 TGDH--VAVVGENRKLLIFSIDQIPEMSRGKG-------------VRLQSYKDGGISDVI 701 G V ++ + + F +DQ+ SR G V L + GG V+ Sbjct: 653 VGPEADVLLITLHGHAIRFGVDQLRSASRTSGGVRGIRLTDDDTVVSLNAVIPGGELLVV 712 Query: 702 CFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753 T ID +YN RGG G L K ++GK S+ Sbjct: 713 TEHGYGKRTPIDEYP-TYN------------RGGSGVLTSKVTEKTGKVASA 751 >gi|219685127|ref|ZP_03539947.1| DNA gyrase, A subunit [Borrelia garinii Far04] gi|219673223|gb|EED30242.1| DNA gyrase, A subunit [Borrelia garinii Far04] Length = 810 Score = 431 bits (1109), Expect = e-118, Method: Compositional matrix adjust. Identities = 249/627 (39%), Positives = 384/627 (61%), Gaps = 30/627 (4%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 +E + + + ++ YL YA+S I RA+PD+RDG KPVHRRI+++M EMGL AFK Sbjct: 7 KEQILNIKIEDEIKTSYLNYAMSVIVSRALPDVRDGLKPVHRRILYSMYEMGLRSDKAFK 66 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 K+ RIVG+V+GK HPHGDQS+YD+LVRLAQ F RYP+I GQGNFG+IDGD AA RYTE Sbjct: 67 KAGRIVGDVLGKYHPHGDQSIYDALVRLAQDFSLRYPVIRGQGNFGSIDGDPPAAMRYTE 126 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 A+M ++ E I++ +D++ V+F+ Y++ SEP + PS FP LL NG+SGIAVGMAT++ Sbjct: 127 AKMERITEYIVKDIDKETVNFKSNYDDSLSEPEIMPSSFPFLLVNGSSGIAVGMATNMAP 186 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN++EIC+A + ++DN SI LL+ + GPDFPT G IV + ++++++Y+ G+G +R Sbjct: 187 HNLREICDAIVYMLDNDNASIFDLLKIVKGPDFPTFGEIVYN-DNLIKAYKTGKGSVVIR 245 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIV 312 AR+ +EE I+VTEIPY V KS L+ K+A L+ +++ L DIRDES E +RIV Sbjct: 246 ARYHIEERTEDRNAIIVTEIPYTVNKSALLMKVAFLVKEEKLEGLLDIRDESDREGIRIV 305 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 L K R DP ++M ++ ++ + F +N N+ + +P+ + L+ +L E++ HR+ ++ Sbjct: 306 LEVK-RGFDPHVIMNLLYEYTEFKKHFSIN-NLALVDGIPKQLNLEELLFEFIEHRKNII 363 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVD 429 RR F ++ + IL+GL IA NIDE+I II++ K +V+ F L+E Q + Sbjct: 364 ERRIEFDLRKAKEKAHILEGLNIALNNIDEVINIIKSSRLAKDARERLVANFGLSEIQAN 423 Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAE-KEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488 ++L+++L+ L LE ++++ EL+ LL+ K+ D LLN + I IRE E + Sbjct: 424 SVLDMKLQKLTALEIFKLEEELNVLLSLIKDYEDILLNPAR-----IINIIRE--ETINL 476 Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD--------L 540 G R T T +++KE I V+++ +G+++ L + L Sbjct: 477 GLKFGDERRTKIIYDEEVLKTSMSDLMQKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGL 536 Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNH 598 S+ +GD + IAL +T D + ++S +GK Y + A + S G+ I LI+L Sbjct: 537 SSFDLNDGDEVAIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRASKGQNISELINLGD 596 Query: 599 NQDIVT-----AFVYDSTCKLLVVSSK 620 ++I+T F DS L S K Sbjct: 597 QEEILTIKNSKEFTDDSYLLLTTASGK 623 >gi|229542309|ref|ZP_04431369.1| DNA gyrase, A subunit [Bacillus coagulans 36D1] gi|229326729|gb|EEN92404.1| DNA gyrase, A subunit [Bacillus coagulans 36D1] Length = 824 Score = 431 bits (1109), Expect = e-118, Method: Compositional matrix adjust. Identities = 235/565 (41%), Positives = 357/565 (63%), Gaps = 20/565 (3%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 E N+ V+L + +L YA+S I RAIPD+RDG KPVHRRI++AM ++G+ A+K Sbjct: 6 ESNIVEVNLTQEMRTSFLDYAMSVIVSRAIPDVRDGLKPVHRRILYAMHDLGMTPDKAYK 65 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSARIVGEVIGK HPHGD +VY+++VR+AQ F RY L+ G GNFG++DGD AAA RYTE Sbjct: 66 KSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSYRYMLVDGHGNFGSVDGDPAAAMRYTE 125 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 ARM++++ +L+ +++D +DF+D Y+ + EP V PS+FPNLL NG+SGIAVGMAT+IP Sbjct: 126 ARMSKISLELLRDINKDTIDFQDNYDGSEKEPAVLPSRFPNLLVNGSSGIAVGMATNIPP 185 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 H + E+ + LAL +P+I+I++L+EYI GPDFPT G+IV R I +Y GRG +R Sbjct: 186 HQLGEVIDGILALSKDPDITIQELMEYIPGPDFPTAGLIV-GRSGIRRAYETGRGSITLR 244 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313 AR +E+ G I+VTE+PYQV K++LIE+IAEL+ KRI + D+RDES + ++ Sbjct: 245 ARVEIEQRSNGKESIIVTELPYQVNKAKLIERIAELVHEKRIDGITDLRDESDRNGMRMV 304 Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373 R + ++++ +++ + M+T F +N+ L G+ P+V+ L LK +L H+ EV+ Sbjct: 305 IEVRRDANANVILNNLYKHTAMQTTFGINLLALVAGQ-PKVLNLKQALKFYLDHQEEVIR 363 Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDA 430 RR++F ++ + R IL+GL IA +ID II +IR+ D + ++ +FSL+E Q A Sbjct: 364 RRTAFELKKAEARAHILEGLRIALDHIDAIIQLIRSSQTTDIARTGLMEQFSLSEKQAQA 423 Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490 IL++RL+ L LE +I+ E L+ ++ ++L ++ I E+ E+KE F+ Sbjct: 424 ILDMRLQRLTGLEREKIEEEYRGLIQLIAELKAVLADEEKVLEIIREELLEIKERFNDE- 482 Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSA 542 RRT S D+ + +I +E I + +++ G+I RS K + Sbjct: 483 ----RRTEIIAAS-VDQIE-DEDLIPQESIAITLTHNGYIKRLPISTYRSQKRGGRGVQG 536 Query: 543 LHFKEGDSLKIALHAHTTDRILLLS 567 + E D ++ L T D IL + Sbjct: 537 MGTNEDDFVEHLLTTSTHDTILFFT 561 >gi|223983500|ref|ZP_03633686.1| hypothetical protein HOLDEFILI_00967 [Holdemania filiformis DSM 12042] gi|223964672|gb|EEF68998.1| hypothetical protein HOLDEFILI_00967 [Holdemania filiformis DSM 12042] Length = 849 Score = 431 bits (1109), Expect = e-118, Method: Compositional matrix adjust. Identities = 237/611 (38%), Positives = 376/611 (61%), Gaps = 26/611 (4%) Query: 8 NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67 + N N+K ++ + +L Y++S I RA+PD+RDG KPVHRRI++AM+++G+ Sbjct: 2 DENNFNHGNIKTTNISSEMRTSFLDYSMSVIVARALPDVRDGMKPVHRRILYAMNDLGIV 61 Query: 68 FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAA 127 KKSARIVGEVIGK HPHGD +VY+++VR+AQ F RYPL+ G GNFG++DGD AA Sbjct: 62 ADKPHKKSARIVGEVIGKYHPHGDTAVYETMVRMAQDFSYRYPLVDGHGNFGSVDGDGAA 121 Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187 A RYTEARM++++ +L+ +++D VD+ D Y+ E+ EPVV P +FPNLL NGT+GIAVGM Sbjct: 122 AMRYTEARMSKISMELLRDINKDTVDWMDNYDGEEHEPVVLPCRFPNLLVNGTTGIAVGM 181 Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLE-YIIGPDFPTGGIIVESRESIVESYRLG 246 AT+IP HN+ E +A A++DNP+I++ +L+E YI GPDFPTGG I+ R I ++Y G Sbjct: 182 ATNIPPHNLGETIDAVFAVMDNPDITVMELMEDYISGPDFPTGGYIL-GRAGIKQAYETG 240 Query: 247 RGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES- 305 RG +R++ VE++ G I+VTEIPY V K+ L+EKIA L+ K I + D+RDES Sbjct: 241 RGSIMIRSKVKVEDMPNGKKQIIVTEIPYVVNKAALVEKIASLVREKIIEGITDLRDESN 300 Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365 E +RIV+ + + + D+++ ++ ++ ++T F +NM VL + PQ + L +LK +L Sbjct: 301 MEGIRIVIELR-KDVQSDVILNQLYRMTSLQTSFGVNMIVL-VDNAPQQLGLKDVLKCYL 358 Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFS 422 H+ +V RR+ F ++ + R IL+GL IA +ID II++IR+ M + F Sbjct: 359 DHQIDVTVRRTRFELKKAEDRAHILEGLKIALDHIDAIISLIRSSKDTSIAMNGLMENFG 418 Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482 L+E Q AIL+++ R L LE +I+ E D+L+A+ + +LN+ + I E+ E+ Sbjct: 419 LSEIQAKAILDMQFRRLTGLERQKIEEEYDSLMAQITDLKDILNNHSRVLEIIRSELTEI 478 Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS- 541 KE ++ +RR+ E+ A+ + +I +E + + ++ G+++ + + L Sbjct: 479 KEKYND-----KRRS---EIIDAEIDMQDEDLIPQEDVVITMTVNGYVKRIPVDTYRLQN 530 Query: 542 -------ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN--LLSGRGHGEAIQL 592 + E D + L T D +L+ + GK Y + L S G I Sbjct: 531 RGGKGIKGMSMHEDDIVDQFLTMMTHDYLLMFTNQGKVYRIKGYQVPLASRTSKGIPIVN 590 Query: 593 LIDLNHNQDIV 603 L++L+ ++ ++ Sbjct: 591 LLNLDKDEKVL 601 >gi|317495093|ref|ZP_07953464.1| DNA gyrase, subunit A [Gemella moribillum M424] gi|316914800|gb|EFV36275.1| DNA gyrase, subunit A [Gemella moribillum M424] Length = 815 Score = 431 bits (1109), Expect = e-118, Method: Compositional matrix adjust. Identities = 270/784 (34%), Positives = 444/784 (56%), Gaps = 76/784 (9%) Query: 13 VEENVKAVSLR---FALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69 +E+N ++LR +E +L Y++S I RA+PD+RDG KPVHRRI++A +E+GL Sbjct: 1 MEDNKNNITLRNITTEIENSFLDYSMSVIVSRALPDVRDGLKPVHRRILYAFNELGLTHD 60 Query: 70 AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129 ++KSA +VGEV+ K HPHGD + Y ++VRLAQ F RYP++ GQGNFG+IDGD AAA Sbjct: 61 KPYRKSAAVVGEVMAKYHPHGDLATYGTIVRLAQDFNSRYPMVDGQGNFGSIDGDGAAAM 120 Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189 RYTEARM+++A +L+ +++D VD ++ Y+ EP V P++ PNLL NG+SGIAVGMAT Sbjct: 121 RYTEARMSKIASEMLRDINKDTVDMQENYDGTKQEPKVLPARIPNLLVNGSSGIAVGMAT 180 Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249 +IP HN+ E+ + +AL DN EI+I +L+ I GPDFPTG ++ R IV++Y GRG Sbjct: 181 NIPPHNLGEVIDGVVALADNSEITIAELMTKIKGPDFPTGAHLL-GRSGIVKAYTTGRGS 239 Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-ED 308 +R + +E++ G IV+TEIPYQV K++L+EKIAEL K+I + D+RDES + Sbjct: 240 IIMRGKTEIEQIKNGKERIVITEIPYQVNKAKLVEKIAELARDKKIEGVTDLRDESNLKG 299 Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368 +RIV+ + R ++ ++++ +++ L+ +++ F +NM L G VP+++ L L +L H+ Sbjct: 300 MRIVIELR-RDVNSNVILNNLYKLTPLQSSFGVNMIALVNG-VPKLLNLKEALYHYLEHQ 357 Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTE 425 +EV+ RR+ F + R IL+GL IA NID II++IR ++ K ++ +FSLT+ Sbjct: 358 KEVVVRRTRFDLNKAKARAHILEGLRIALDNIDRIISLIRGSQTTEEAKTGLMEQFSLTD 417 Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485 Q AIL++RL+ L LE +I+ E L+ ++ +L ++ + E+ E+K+ Sbjct: 418 VQAQAILDMRLQRLTGLERDKIEEEYKKLMELIADLEDILAKPERVIEIVKEELLEIKDK 477 Query: 486 FSKSTDLGRRRTTFCE--VSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD---- 539 + +RR+ E + + D + +IEKE I + +S+ +I+ L + + Sbjct: 478 YGD-----KRRSVIIEGQIDQID----NEDLIEKEQIIITLSHNQYIKRLAASTYKSQGR 528 Query: 540 ----LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAG--NLLSGRGHG------ 587 ++ + + D++ L T D IL + GK YTL N +S + G Sbjct: 529 GGRGVNGMTTNDEDNIAYMLSCSTHDHILFFTDKGKVYTLKGYEINQMSRQSKGIPIINL 588 Query: 588 ------EAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF 641 E + +I ++ Q+ T+ ++ + ++ S G+ + +KGK Sbjct: 589 LEIEKEEKVNSIIAISDLQEEDTSLIFSTKFGIIKKSKLGDYASI--------LKKGKIA 640 Query: 642 LKVSSEEKMKLVVKVTGDH----VAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGG 696 LK+ + + V ++T D V G+ ++ + Q+ +SRG KG+ L Sbjct: 641 LKLDDGDSLIDVQRITDDQDIMIVTANGQAIRINAKKVRQMGRVSRGVKGITLSP----- 695 Query: 697 ISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGK--------RGGVGSLVPKGFPRSG 748 D + G+ +D + + +EN +G + K RGG G V K ++G Sbjct: 696 -DDYVV-----GMEVVDESKKILTVTENG-IGKISKSTEFNVINRGGKGVKVAKVTKKTG 748 Query: 749 KFLS 752 K ++ Sbjct: 749 KIVA 752 >gi|297616220|ref|YP_003701379.1| DNA gyrase subunit alpha [Syntrophothermus lipocalidus DSM 12680] gi|297144057|gb|ADI00814.1| DNA gyrase, A subunit [Syntrophothermus lipocalidus DSM 12680] Length = 811 Score = 431 bits (1108), Expect = e-118, Method: Compositional matrix adjust. Identities = 265/728 (36%), Positives = 415/728 (57%), Gaps = 33/728 (4%) Query: 30 YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89 +L Y++S I RA+PD+RDG KPVHRRI++A E G+ +KSA +VG V+G+ HPH Sbjct: 21 FLDYSMSVIVSRALPDVRDGLKPVHRRILYAFYEQGMTPEKPHRKSANLVGLVLGQYHPH 80 Query: 90 GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDE 149 GD +VYD++VR+AQ F RY L+ G GNFG++DGDS AA RYTEAR+T +A +L+ +++ Sbjct: 81 GDAAVYDAMVRMAQDFSMRYCLVDGHGNFGSVDGDSPAAMRYTEARLTALAVEMLRDIEK 140 Query: 150 DAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDN 209 D VDFR Y++ EPVV P++ PNLL NG++GIAVGMATSIP HN+ E+ E + L++N Sbjct: 141 DTVDFRPNYDDTRQEPVVLPARLPNLLINGSTGIAVGMATSIPPHNLTEVVEGLIHLLEN 200 Query: 210 PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIV 269 PE ++++L+ YI GPDFPT G+I+ +R + ++YR GRG VR R +EE G IV Sbjct: 201 PEATVDELMRYIKGPDFPTAGLIMGTR-GMRQAYRTGRGSVTVRGRCEIEEKKGGRTSIV 259 Query: 270 VTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFPKNRSLDPDLLMES 328 VTEIPY V K++L+E+IAEL+ K+I + D+RDES +RIV+ + R + P +++ Sbjct: 260 VTEIPYMVNKAKLVERIAELVKEKKIDGITDLRDESDRRGIRIVMDIR-RDISPSVILNK 318 Query: 329 IFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVE 388 ++ + ++ F + + L G PQV+ L +L ++L HRREV+ RR+ F ++ R+ Sbjct: 319 LYRNTQLQDNFGITLLALVDGE-PQVLNLKEMLNQYLNHRREVIRRRTEFDLKVARDRLH 377 Query: 389 ILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVDAILNLRLRSLRKLEEY 445 I++GL IA N+DE++ IIRN K ++SRF LTE Q +AI+ +RLR L LE Sbjct: 378 IVEGLKIALDNLDEVVDIIRNSPDVKTARNNLMSRFDLTEMQAEAIVEMRLRQLTGLERN 437 Query: 446 QIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRA 505 +++ E L+ ++ +L ++ I ++ ++K F +RRT E+ Sbjct: 438 KLEEEYRELVGRISDLEDILRRPERVQAIIKEDLIDIKTRFGD-----KRRT---EIREE 489 Query: 506 DKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHA 557 D + + +IE+E I V +SNRG+I RS + ++ + D Sbjct: 490 DASFEAEDLIEEESIVVTLSNRGYIKRQPLSTYRSQRRGGKGVTGTAIRSEDFATDIFVT 549 Query: 558 HTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTC 612 T +L + G+ Y+L A + S + G + + LN + + T +D+ Sbjct: 550 TTLSTLLFFTNHGRVYSLKAYQVPEASRQSRGTPVINFLRLNPGEKVNTVISVNRFDAGQ 609 Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV-TGDHVAVVGENRKLL 671 L++ + G V E R G + + +++++ V K+ GD + +V + Sbjct: 610 HLVMATRTGMVKKVPIDEFRQIRRSGIIAINLRNQDELVGVQKIYKGDRLVLVTGRGYSI 669 Query: 672 IFSIDQIPEMSRG-KGVRLQSYKDGG-ISDVICFKICEGLTWIDSAGRSYNRSENDLLGW 729 +F + M RG GVR S + G + D+ +K EG + R Y + + Sbjct: 670 VFDEGDVRVMGRGAAGVRGISLEQGDKVIDIDKYK--EGADMLLVTERGYGKRTSLQELR 727 Query: 730 LGKRGGVG 737 L KRGG G Sbjct: 728 LQKRGGKG 735 >gi|110801534|ref|YP_697358.1| DNA gyrase subunit A [Clostridium perfringens SM101] gi|110682035|gb|ABG85405.1| DNA gyrase, A subunit [Clostridium perfringens SM101] Length = 839 Score = 431 bits (1108), Expect = e-118, Method: Compositional matrix adjust. Identities = 275/773 (35%), Positives = 438/773 (56%), Gaps = 54/773 (6%) Query: 11 TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70 +L E V + + +++ Y+ YA+S I RA+PD+RDG KPVHRRI+++M E+GL Sbjct: 2 SLNEGKVIPIDINKEMKKCYIDYAMSVIVGRALPDVRDGLKPVHRRILYSMQELGLYPER 61 Query: 71 AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130 ++K ARIVGEV+GK HPHGD SVYD+LVR+AQ F RY L+ G GNFG++DGDSAAA R Sbjct: 62 GYRKCARIVGEVLGKYHPHGDSSVYDALVRMAQDFSLRYMLVDGHGNFGSVDGDSAAAMR 121 Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190 YTEA+M ++A +L+ ++++ VDF ++ E+ EPVV PS++PNLL NG+SGIAVGMAT+ Sbjct: 122 YTEAKMNKIASEMLRDINKNTVDFTPNFDGEEKEPVVLPSRYPNLLVNGSSGIAVGMATN 181 Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250 IP HN+ E+ + +ALIDNPE++ +L+ YI GPDFPT GII+ + I +Y G+G Sbjct: 182 IPPHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAGIIM-GKSGIRAAYETGKGRI 240 Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDV 309 VRA+ +EE G I+VTE+PYQV K++LIE IA+L+ K+I + D+RDES E + Sbjct: 241 VVRAKAEIEE-ENGRHKIIVTELPYQVNKAKLIEYIADLVKDKKITGISDLRDESDREGM 299 Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369 R+V+ K R +P++ + ++ + M+ F + M L + PQ++ L +L ++ ++ Sbjct: 300 RMVIELK-RDANPNVTLNLLYKHTKMQDTFGVIMLAL-VDNQPQILNLKQVLVHYINFQK 357 Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTEN 426 +V+ RR+ F + R IL+GL+IA NIDE+I IIR+ K ++ RFSL+E Sbjct: 358 DVITRRTQFELNKAKERAHILEGLIIALDNIDEVINIIRSSKTSEIAKNTLIERFSLSEK 417 Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486 Q AIL +RLR L LE +I++E + L+ + ++++L S ++ I E+ E+K + Sbjct: 418 QAAAILEMRLRRLTGLERDKIENEYNELMKLIDYLNAILASEERLLEVIKEELLEIKSKY 477 Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD------- 539 S RRT ++ + + + +I++E + + +++ G+I+ + S Sbjct: 478 SDE-----RRT---QIEKQENEIDIEDLIQEEDVVITLTHTGYIKRISSDVYSAQKRGGK 529 Query: 540 -LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEAIQLLIDL 596 + A+ KE D ++ L T +L +T GK Y + A + +GR G + ++ L Sbjct: 530 GIQAMTTKEDDFVENVLVTSTHSNLLFFTTKGKVYKIKAYEVPDAGRTAKGTNLVNILPL 589 Query: 597 NHNQDIVTAFVYDST---------CKLLVVSS---KGNAFIVEESEIIANTRKGKTFLKV 644 ++ I T + KL +V K I + I N R+G L+ Sbjct: 590 EADEKIQTVLSFKDVQEDGYLFMGTKLGIVKKTPLKDFKNIRKNGLIALNLREGDELLRA 649 Query: 645 SSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICF 703 ++ VT D A+ F+ + M R GV+ S ++G ++ +C Sbjct: 650 KITYGDADIIFVTQDGNAIR--------FNETDVRPMGRTASGVKAISLREGDVA--VCM 699 Query: 704 KIC---EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753 I E L + G Y + N + RGG+G + K ++GK + + Sbjct: 700 DIAVEDEKLLVVSENG--YGKRTNLDEYKVQNRGGIGLITYKVSDKTGKVVGA 750 >gi|196036123|ref|ZP_03103523.1| DNA gyrase, A subunit [Bacillus cereus W] gi|195991290|gb|EDX55258.1| DNA gyrase, A subunit [Bacillus cereus W] Length = 823 Score = 431 bits (1108), Expect = e-118, Method: Compositional matrix adjust. Identities = 253/704 (35%), Positives = 415/704 (58%), Gaps = 50/704 (7%) Query: 9 SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68 S+ + ++ +++ + +L YA+S I RA+PD+RDG KPVHRR+++AM+++G+ Sbjct: 2 SDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 61 Query: 69 GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128 A+KKSARIVGEVIGK HPHGD +VY+++VR+AQ F QRY L+ G GNFG++DGDSAAA Sbjct: 62 DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 121 Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188 RYTEARM++++ +++ + ++ +D++D Y+ + EP+V P++FPNLL NGT+GIAVGMA Sbjct: 122 MRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMA 181 Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248 T+IP H + E+ + LAL NP+I+I +L+E I GPDFPT G+I+ R I +Y GRG Sbjct: 182 TNIPPHQLGEVIDGVLALSHNPDITIAELMECIPGPDFPTAGLIL-GRSGIRRAYETGRG 240 Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308 +RA+ +EE G I+VTE+PYQV K+RLIEKIAEL+ K+I + D+RDES + Sbjct: 241 SIILRAKVEIEEKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRN 300 Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368 ++ R + ++L+ +++ + ++T F +NM L G PQV+ L L +L H+ Sbjct: 301 GMRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGE-PQVLNLKQNLYHYLEHQ 359 Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTE 425 + V+ RR+++ ++ + R IL+GL IA ++DE+I +IR+ K ++ RF L+E Sbjct: 360 KVVIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTAEIAKQGLMERFGLSE 419 Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485 Q AIL++RL+ L LE +I+ E +L+ ++ ++L ++ I E+ EVKE Sbjct: 420 KQAQAILDMRLQRLTGLEREKIEQEYQDLMKLIAELKAILADEEKVLEIIREELTEVKER 479 Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSLKSHSVD----- 539 F+ +RRT E++ ++ + +I ++ I + +++ G+I+ L + + Sbjct: 480 FND-----KRRT---EITIGGMEFIEDEDLIPEQNIAITLTHNGYIKRLPASTYKTQNRG 531 Query: 540 ---LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLL 581 + + + D ++ L T D IL + GK Y +P NLL Sbjct: 532 GRGVQGMGTNDDDFVEHLLTTSTHDHILFFTNKGKVYRTKGYEIPEYSRTAKGIPIINLL 591 Query: 582 SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR-KGKT 640 G GE I +I + D F++ +T + + + ++F AN R G Sbjct: 592 -GVDKGEWINAIIPIREFGD--DEFLFFTTKQGISKRTPLSSF--------ANIRTNGLI 640 Query: 641 FLKVSSEEKMKLVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSR 683 + + E+++ V +GD +VG + +LI F+ + M R Sbjct: 641 AISLREEDEVISVRLTSGDKDIIVGTSNGMLIRFNEQDVRSMGR 684 >gi|296330043|ref|ZP_06872527.1| DNA gyrase subunit A [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305672705|ref|YP_003864376.1| DNA gyrase subunit A [Bacillus subtilis subsp. spizizenii str. W23] gi|296153082|gb|EFG93947.1| DNA gyrase subunit A [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305410948|gb|ADM36066.1| DNA gyrase subunit A [Bacillus subtilis subsp. spizizenii str. W23] Length = 821 Score = 431 bits (1108), Expect = e-118, Method: Compositional matrix adjust. Identities = 231/569 (40%), Positives = 363/569 (63%), Gaps = 22/569 (3%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 V+ +++ + +L YA+S I RA+PD+RDG KPVHRRI++AM+++G+ A+KKSA Sbjct: 9 VREINISQEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKAYKKSA 68 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 RIVGEVIGK HPHGD +VY+S+VR+AQ F RY L+ G GNFG++DGDSAAA RYTEARM Sbjct: 69 RIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARM 128 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 ++++ IL+ + +D +D++D Y+ + EPVV PS+FPNLL NG +GIAVGMAT+IP H + Sbjct: 129 SKISMEILRDITKDTIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQL 188 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 EI + LA+ +NP+I+I +L+E+I GPDFPT G I+ R I ++Y GRG +RA+ Sbjct: 189 GEIIDGVLAVSENPDITIPELMEFIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKA 247 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316 +E+ G I+VTE+PYQV K++LIEKIA+L+ K+I + D+RDES ++ Sbjct: 248 EIEQTSSGKERIIVTELPYQVNKAKLIEKIADLVRDKKIEGITDLRDESDRTGMRIVIEI 307 Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376 R + ++++ +++ + ++T F +N+ L G+ P+V+ L L+ +L H++ V+ RR+ Sbjct: 308 RRDANANVILNNLYKQTALQTSFGINLLALVDGQ-PKVLNLKQCLEHYLDHQKVVIRRRT 366 Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAILN 433 ++ ++ + R IL+GL IA ++D +I++IRN + ++ +FSLTE Q AIL+ Sbjct: 367 AYELRKAEARAHILEGLRIALDHLDAVISLIRNSQTAEIARTGLIEQFSLTEKQAQAILD 426 Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493 +RL+ L LE +I+ E +L+ ++ +L + + I E+ E+KE F+ Sbjct: 427 MRLQRLTGLEREKIEEEYLSLVKLIAELKDILANEYKVLEIIREELTEIKERFNDE---- 482 Query: 494 RRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALH 544 RRT E+ A T++ + +IE+E I V +++ G+I RS K + + Sbjct: 483 -RRT---EIVTAGLETIEDEDLIERENIVVTLTHNGYIKRLPASTYRSQKRGGKGVQGMG 538 Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAY 573 E D ++ + T D IL S GK Y Sbjct: 539 TNEDDFVEHLISTSTHDTILFFSNKGKVY 567 >gi|315165722|gb|EFU09739.1| DNA gyrase, A subunit [Enterococcus faecalis TX1302] Length = 833 Score = 431 bits (1108), Expect = e-118, Method: Compositional matrix adjust. Identities = 269/771 (34%), Positives = 444/771 (57%), Gaps = 57/771 (7%) Query: 13 VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72 ++EN++ V+L ++E ++ YA+S I RA+PD+RDG KPVHRRI++ M+E+G+ Sbjct: 5 IKENIQDVNLTSEMKESFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 64 Query: 73 KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132 KKSARIVG+V+GK HPHGD ++Y+S+VR+AQPF R L+ G GNFG++DGD AAA RYT Sbjct: 65 KKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRAMLVDGHGNFGSVDGDGAAAMRYT 124 Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192 EARM+++A +L+ ++++ VDF+ Y++ + EPVV P++FPNLL NGT+GIAVGMAT+IP Sbjct: 125 EARMSKIALEMLRDINKNTVDFQGNYDDSEQEPVVLPARFPNLLVNGTTGIAVGMATNIP 184 Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252 HN+ E+ +A L+DNP+++ +L+E + GPDFPTGG+++ + I +Y G+G V Sbjct: 185 PHNLSEVIDATSLLMDNPDVTTNELMEVLPGPDFPTGGLVM-GKSGIRRAYETGKGSITV 243 Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRI 311 RA+ + E+ G I+VTE+PY V K++LIE+I+EL KRI + D+RDES+ E +RI Sbjct: 244 RAKVELTEMPNGKERILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMRI 303 Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371 V+ + R + +++ +++ ++ ++T F NM + G VP+++ L IL+ ++ H++EV Sbjct: 304 VIDVR-RDVSASVVLNNLYKMTALQTSFGFNMLAIEKG-VPKILSLKRILENYVEHQKEV 361 Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQV 428 + RR+ F + R IL+GL IA +IDEIIAIIR ++D+ K ++ RF ++ Q Sbjct: 362 ITRRTIFDKNKAEARAHILEGLRIALDHIDEIIAIIRGSQSDDEAKATLIERFEFSDRQA 421 Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488 AIL++RLR L LE +I++E LL ++ +L ++ I E+ +V+ F Sbjct: 422 QAILDMRLRRLTGLERDKIENEYQELLKFIADLEDILARPERVIEIIKTELNDVRTKFGD 481 Query: 489 STDLGRRRTTFC--EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV-------- 538 + RRT EV + + +IE+E + + ++N G+I+ + + Sbjct: 482 A-----RRTELLVGEVL----SLEDEDLIEEEEVVITLTNNGYIKRMANSEFRAQRRGGR 532 Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY---------------TLPAGNLLSG 583 + + + D +K + T D +L + GK Y +P NLL G Sbjct: 533 GVQGMGVHDDDFVKNLVSCSTHDTLLFFTNTGKVYRAKGYEIPEYGRTAKGIPVINLL-G 591 Query: 584 RGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLK 643 E IQ +I + + +++ +T K V + AF S I +N G + Sbjct: 592 IDSAEKIQAIISVEGKAE-AGKYLFFTTLKGTVKRTAVTAF----SNIRSN---GLIAIS 643 Query: 644 VSSEEKMKLVVKVTGDHVAVVGENRKL-LIFSIDQIPEMSRG----KGVRLQSYKDGGIS 698 + E+++ VV G+ ++G + + F + + +M R +G+RL+ D + Sbjct: 644 LKEEDELVNVVTTNGNQKMIIGTHAGYSVTFDENTVRDMGRTASGVRGIRLRE-NDYVVG 702 Query: 699 DVICFKICEGLTWIDSA-GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG 748 I + E L ++ G+ SE + G GK ++ K P +G Sbjct: 703 AAILDENKEVLVITENGYGKRTKASEYPVKGRGGKGIKTANITEKNGPLAG 753 >gi|111013719|gb|ABH03380.1| DNA gyrase A subunit [Helicobacter pullorum NCTC 12824] Length = 829 Score = 431 bits (1108), Expect = e-118, Method: Compositional matrix adjust. Identities = 249/614 (40%), Positives = 382/614 (62%), Gaps = 36/614 (5%) Query: 12 LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71 L+ ++++ V++ +++E YL Y++S I RA+PD RDG KPVHRRI++AM E+G+ A Sbjct: 4 LLNQDIQNVNIEDSIKESYLDYSMSVIVGRALPDARDGLKPVHRRILYAMYELGVTSKAK 63 Query: 72 FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131 +KKSARIVG+VIGK HPHGD +VYD+LVR+AQ F R L+ GQGNFG+IDGDSAAA RY Sbjct: 64 YKKSARIVGDVIGKYHPHGDTAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDSAAAMRY 123 Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191 TEA+MTQ AE +L+ +D+D VDF Y++ EP + PS+ PNLL NG++GIAVGMAT+I Sbjct: 124 TEAKMTQAAEEVLRDIDKDTVDFLPNYDDTLKEPDILPSRLPNLLINGSNGIAVGMATNI 183 Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251 P H V EI +A + LIDNP+ + ++L+++ GPDFPTGGII + I E+Y GRG + Sbjct: 184 PPHRVDEIIDALVYLIDNPKAELNEILQFVEGPDFPTGGIIY-GKNGIREAYETGRGRIK 242 Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVR 310 VRA+ +E+ + IV+ EIPYQV K+RL+E+IAEL K I + ++RDES E +R Sbjct: 243 VRAKTHIEKT-KTKDIIVIDEIPYQVNKARLVEQIAELAKEKVIEGISEVRDESDREGIR 301 Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370 +V+ K ++ ++++ +F + ME+ F + + + + P++ L +L +++HR+ Sbjct: 302 VVIELKREAM-SEIVLNHLFKSTPMESTFGIILLAI-YNKEPKIFTLLELLGLFISHRKS 359 Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQ 427 V+ RR+ F ++ R IL+GL IA NIDEI+++IR+ PK ++S+F+L+E Q Sbjct: 360 VVIRRTIFELEKAKARAHILEGLRIALENIDEIVSLIRSSSDPKVAKEGLISQFNLSEIQ 419 Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487 AIL++RL+ L LE +I++E LL E E ++S+L S I E+ EVKE FS Sbjct: 420 AQAILDMRLQRLTGLEREKIENEYQELLKEIEYLNSILRSEDLLNKIIKEELLEVKEKFS 479 Query: 488 KSTDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546 +R T E D ++ + +I E + V +S+RG+++ + + + Sbjct: 480 T------KRLTAIE---EDYESIDMEDLIPNEAVVVTMSHRGYVKRVPVRTYEKQ----N 526 Query: 547 EGDSLKIALHAH------------TTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQL 592 G KI+ + H T D I+ ++ G+ Y L + S G+A+ Sbjct: 527 RGGKGKISANTHDDDFIESFFVSDTHDTIMFITNKGQLYWLKVYKIPEASRTAIGKAVVN 586 Query: 593 LIDLNHNQDIVTAF 606 LI+L ++ I+ Sbjct: 587 LINLAPDEKIMATI 600 >gi|219684136|ref|ZP_03539080.1| DNA gyrase, A subunit [Borrelia garinii PBr] gi|219672125|gb|EED29178.1| DNA gyrase, A subunit [Borrelia garinii PBr] Length = 810 Score = 431 bits (1108), Expect = e-118, Method: Compositional matrix adjust. Identities = 245/607 (40%), Positives = 380/607 (62%), Gaps = 27/607 (4%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 +E + + + ++ YL YA+S I RA+PD+RDG KPVHRRI+++M EMGL AFK Sbjct: 7 KEQILNIKIEDEIKTSYLNYAMSVIVSRALPDVRDGLKPVHRRILYSMYEMGLRSDKAFK 66 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 K+ RIVG+V+GK HPHGDQS+YD+LVRLAQ F RYP+I GQGNFG+IDGD AA RYTE Sbjct: 67 KAGRIVGDVLGKYHPHGDQSIYDALVRLAQDFSLRYPVIRGQGNFGSIDGDPPAAMRYTE 126 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 A+M ++ E I++ +D++ V+F+ Y++ SEP + PS FP LL NG+SGIAVGMAT++ Sbjct: 127 AKMERITEYIVKDIDKETVNFKSNYDDSLSEPEIMPSSFPFLLVNGSSGIAVGMATNMAP 186 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN++EIC+A + ++DN SI LL+ + GPDFPT G IV + ++++++Y+ G+G +R Sbjct: 187 HNLREICDAIVYMLDNENASIFDLLKIVKGPDFPTFGEIVYN-DNLIKAYKTGKGSVVIR 245 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIV 312 AR+ +EE I+VTEIPY V KS L+ K+A L+ +++ L DIRDES E +RIV Sbjct: 246 ARYHIEERTEDRNAIIVTEIPYTVNKSALLMKVALLVKEEKLEGLLDIRDESDREGIRIV 305 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 L K R DP ++M ++ ++ + F +N N+ + +P+ + L+ +L E++ HR+ ++ Sbjct: 306 LEVK-RGFDPHVIMNLLYEYTEFKKHFSIN-NLALVDGIPKQLNLEELLFEFIEHRKNII 363 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVD 429 RR F ++ + IL+GL IA NIDE+I II++ K +V+ F L+E Q + Sbjct: 364 ERRIEFDLRKAKEKAHILEGLNIALNNIDEVINIIKSSRLAKDARERLVANFGLSEIQAN 423 Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAE-KEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488 ++L+++L+ L LE ++++ EL+ LL+ K+ D LLN + I IRE E + Sbjct: 424 SVLDMKLQKLTALEIFKLEEELNVLLSLIKDYEDILLNPAR-----IINIIRE--ETINL 476 Query: 489 STDLG-RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD-------- 539 G RRT K ++ M +KE I V+++ +G+++ L + Sbjct: 477 GLKFGDERRTKIIYDEEVLKTSMSDLM-QKENIVVMLTKKGFLKRLSQNEYKLQGTGGKG 535 Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLN 597 LS+ +GD + IAL +T D + ++S +GK Y + A + S G+ I LI+L Sbjct: 536 LSSFDLNDGDEVAIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRASKGQNISELINLG 595 Query: 598 HNQDIVT 604 ++I+T Sbjct: 596 DQEEILT 602 >gi|54294303|ref|YP_126718.1| DNA gyrase, subunit A, type II topoisomerase [Legionella pneumophila str. Lens] gi|53754135|emb|CAH15608.1| DNA gyrase, subunit A, type II topoisomerase [Legionella pneumophila str. Lens] Length = 863 Score = 431 bits (1107), Expect = e-118, Method: Compositional matrix adjust. Identities = 286/802 (35%), Positives = 438/802 (54%), Gaps = 87/802 (10%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 V V++ L++ YL YA+S I RA+PD+RDG KPVHRR++ AMSE+G D+ +KKSA Sbjct: 8 VLPVNIEDELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELGNDWNKPYKKSA 67 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD +VYD++VR+AQPF RY LI GQGNFG++DGD+ AA RYTE RM Sbjct: 68 RVVGDVIGKYHPHGDTAVYDTIVRMAQPFSMRYMLIDGQGNFGSVDGDAPAAMRYTEVRM 127 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 ++VA +L +D++ VDF Y+E + PVV PS+ PNLL NG+SGIAVGMAT+IP HN+ Sbjct: 128 SKVAHALLADLDKETVDFSPNYDETEFAPVVLPSRIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ A +AL+D P+ S+E L+E I GPDFPT II R I+E YR G+G +RAR Sbjct: 188 TEVINACIALVDEPDTSLEDLMEIIPGPDFPTAAII-NGRAGIIEGYRTGKGRVVIRART 246 Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315 +E + G I++ E+PYQV K+RLIE+IAEL+ K+I + +RDES + V+ Sbjct: 247 EIETDESSGRQSIIIQELPYQVNKARLIERIAELVRDKKIEGISGLRDESDKQGMRVVIE 306 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 R+ D+++ ++F + M+ F +NM L G+ P+ + L IL+ ++ HRREV+ RR Sbjct: 307 LKRNEVADVVLNNLFAHTQMQNVFGINMVALVDGQ-PRTLNLKQILEYFIKHRREVVTRR 365 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR------------ 420 + F ++ R +L+GL IA NIDE+IA+I+ P K ++S+ Sbjct: 366 TIFELKKARNRAHLLEGLGIALANIDEMIALIKQSSTPQDAKSALLSKIWQPGLVKAMLE 425 Query: 421 ----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458 + L+E Q AIL LRL L LE+ +I +E + LL Sbjct: 426 KAGSNASRPDDLTEEYGLHENGYKLSEAQAQAILELRLHRLTALEQDKIINEFEELLNLI 485 Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518 +++ +L S ++ I E+ E+K F RRT E++ + + + +I +E Sbjct: 486 KELLDILASPERLMQVIRDELIEIKSQFGDE-----RRT---EITASQEDLTIEDLITEE 537 Query: 519 PITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570 + V +S++G+++ + + SA H K+ D ++ + A T D +L S G Sbjct: 538 DVVVTLSHQGYVKYQPITAYQAQRRGGKGKSATHVKDEDFVERLVIASTHDTLLCFSNHG 597 Query: 571 -----KAYTLPAGNLLS-GR--------GHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLV 616 KAY LP + S GR GE I ++ + +D ++V+ +T K V Sbjct: 598 KLYWLKAYQLPQASRASRGRPIINILPLAEGEEINAMLPVREYKD--GSYVFMATKKGTV 655 Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV-VKVT--GDHVAVVGENRKLLIF 673 NAF + + + V EE LV V +T + + + K++ F Sbjct: 656 KKVPLNAF---------SRPRSNGIIAVDLEEDDSLVGVDITDGARDIMLFTDAGKVIRF 706 Query: 674 SIDQIPEMSR-GKGVR-LQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLG 731 ++ M R +GVR ++ KD + ++ G T + + Y + + + Sbjct: 707 DESKVRPMGRTARGVRGIRVEKDQAVKSLVVVDPSGG-TILTATENGYGKRTHIDEYRVS 765 Query: 732 KRGGVGSLVPKGFPRSGKFLSS 753 RGG G + + R+GK + S Sbjct: 766 GRGGQGVISIQVTERNGKVVRS 787 >gi|34556798|ref|NP_906613.1| DNA gyrase subunit A [Wolinella succinogenes DSM 1740] gi|34482513|emb|CAE09513.1| DNA GYRASE SUBUNIT A [Wolinella succinogenes] Length = 828 Score = 431 bits (1107), Expect = e-118, Method: Compositional matrix adjust. Identities = 283/765 (36%), Positives = 429/765 (56%), Gaps = 99/765 (12%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 E++K V++ +++E YL Y++S I RA+PD RDG KPVHRRI++AM E+G+ AA+KK Sbjct: 9 EDIKEVNIEDSVKESYLDYSMSVIVGRALPDARDGLKPVHRRILYAMHELGVGARAAYKK 68 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 SARIVG+VIGK HPHGD +VYD+LVR+AQ F R L+ GQGNFG+IDGD+AAA RYTEA Sbjct: 69 SARIVGDVIGKYHPHGDTAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDNAAAMRYTEA 128 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 RMTQ +E IL+ ++++ VDF Y++ EP V PS+ PNLL NG++GIAVGMAT+IP H Sbjct: 129 RMTQASEEILRDIEKETVDFVSNYDDTLKEPDVLPSRIPNLLVNGSNGIAVGMATNIPPH 188 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 + E+ EA + LID+P+ +E L+ ++ GPDFPTGGII ++ I+E+YR GRG RVRA Sbjct: 189 RLDEVVEALIHLIDHPQAELEDLMGFVEGPDFPTGGIIY-GKQGIIEAYRTGRGRIRVRA 247 Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVL 313 + +E+ + IV+ E+PYQ K+RL+E+IAEL K I + ++RDES E +R+V+ Sbjct: 248 KTHIEK-NKTKDVIVIDEVPYQTNKARLVEQIAELAKEKVIEGIAEVRDESDREGIRVVI 306 Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373 K ++ ++++ +F + MET F + + + + P++ L +L +L HR+ V+ Sbjct: 307 ELKKDAM-SEIVLNHLFKSTAMETTFGIILLAIH-NKEPKIFTLLELLNLFLNHRKTVVI 364 Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDA 430 RR+ F ++ R IL+GL IA +IDEI+++IR + + K +++RF L+E Q A Sbjct: 365 RRTIFELEKAKARAHILEGLRIALDHIDEIVSLIRASSDAKEAKEGLMARFGLSEIQSQA 424 Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490 IL++RL+ L LE +I++E LL E E++ ++L S ++ I E+ E++E FS Sbjct: 425 ILDMRLQRLTGLEREKIENEYQELLKEIERLTAILRSEEKLNEIIKQELIEIREKFST-- 482 Query: 491 DLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549 +R+TT E D ++ + +I EP V +S+RG+++ + S + G Sbjct: 483 ---KRKTTIEE----DYESIDIEDLIPNEPTVVTMSHRGYVKRVPLRSYEKQ----NRGG 531 Query: 550 SLKIALHAH------------TTDRILLLSTDG-----KAYTLP-AGNLLSGRGHGEAIQ 591 KI+ + H T D IL ++ G K Y +P AG G+ IQ Sbjct: 532 KGKISGNTHDDDFIESFFVSNTHDTILFITDKGQLYWLKVYRIPEAGRTAIGKAVVNLIQ 591 Query: 592 L-----------------------------------------------LIDLNHNQDIVT 604 + I+L+ N ++VT Sbjct: 592 IGADEKIMATITTQDFNEDKSLMFFTKNGIVKRSNLSEFKNIRSVGIRAINLDDNDELVT 651 Query: 605 AFVYDSTCK-LLVVSSKGNA--FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHV 661 A + DS K + V + KG F VE+ I +G T ++ +E GD Sbjct: 652 ARIIDSNVKEIFVATYKGMCIRFPVEDIREIGRVARGVTGIRFKEDEDYVAGATTIGD-- 709 Query: 662 AVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKIC 706 E +LL S I + + + RLQS G VI K+ Sbjct: 710 ----EKEELLTVSEKGIGKRTEAEEYRLQSRGGKG---VIAMKLT 747 >gi|182627055|ref|ZP_02954780.1| DNA gyrase, A subunit [Clostridium perfringens D str. JGS1721] gi|177907581|gb|EDT70220.1| DNA gyrase, A subunit [Clostridium perfringens D str. JGS1721] Length = 839 Score = 431 bits (1107), Expect = e-118, Method: Compositional matrix adjust. Identities = 275/773 (35%), Positives = 438/773 (56%), Gaps = 54/773 (6%) Query: 11 TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70 +L E V + + +++ Y+ YA+S I RA+PD+RDG KPVHRRI+++M E+GL Sbjct: 2 SLNEGKVIPIDINKEMKKCYIDYAMSVIVGRALPDVRDGLKPVHRRILYSMQELGLYPER 61 Query: 71 AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130 ++K ARIVGEV+GK HPHGD SVYD+LVR+AQ F RY L+ G GNFG++DGDSAAA R Sbjct: 62 GYRKCARIVGEVLGKYHPHGDSSVYDALVRMAQDFSLRYMLVDGHGNFGSVDGDSAAAMR 121 Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190 YTEA+M ++A +L+ ++++ VDF ++ E+ EPVV PS++PNLL NG+SGIAVGMAT+ Sbjct: 122 YTEAKMNKIASEMLRDINKNTVDFIPNFDGEEKEPVVLPSRYPNLLVNGSSGIAVGMATN 181 Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250 IP HN+ E+ + +ALIDNPE++ +L+ YI GPDFPT GII+ + I +Y G+G Sbjct: 182 IPPHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAGIIM-GKSGIRAAYETGKGRI 240 Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDV 309 VRA+ +EE G I+VTE+PYQV K++LIE IA+L+ K+I + D+RDES E + Sbjct: 241 VVRAKAEIEE-ENGRHKIIVTELPYQVNKAKLIEYIADLVKDKKITGISDLRDESDREGM 299 Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369 R+V+ K R +P++ + ++ + M+ F + M L + PQ++ L +L ++ ++ Sbjct: 300 RMVIELK-RDANPNVTLNLLYKHTKMQDTFGVIMLAL-VDNQPQILNLKQVLVHYINFQK 357 Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTEN 426 +V+ RR+ F + R IL+GL+IA NIDE+I IIR+ K ++ RFSL+E Sbjct: 358 DVITRRTQFELNKAKERAHILEGLIIALDNIDEVINIIRSSKTSEIAKNTLIERFSLSEK 417 Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486 Q AIL +RLR L LE +I++E + L+ + ++++L S ++ I E+ E+K + Sbjct: 418 QAAAILEMRLRRLTGLERDKIENEYNELMKLIDYLNAILASEERLLEVIKEELLEIKAKY 477 Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD------- 539 S RRT ++ + + + +I++E + + +++ G+I+ + S Sbjct: 478 SDE-----RRT---QIEKQENEIDIEDLIQEEDVVITLTHTGYIKRISSDVYSAQKRGGK 529 Query: 540 -LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEAIQLLIDL 596 + A+ KE D ++ L T +L +T GK Y + A + +GR G + ++ L Sbjct: 530 GIQAMTTKEDDFVENVLVTSTHSNLLFFTTKGKVYKIKAYEVPDAGRTAKGTNLVNILPL 589 Query: 597 NHNQDIVTAFVYDST---------CKLLVVSS---KGNAFIVEESEIIANTRKGKTFLKV 644 ++ I T + KL +V K I + I N R+G L+ Sbjct: 590 EADEKIQTVLSFKDVQEDGYLFMGTKLGIVKKTPLKDFKNIRKNGLIALNLREGDELLRA 649 Query: 645 SSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICF 703 ++ VT D A+ F+ + M R GV+ S ++G ++ +C Sbjct: 650 KITYGDADIIFVTQDGNAIR--------FNETDVRPMGRTASGVKAISLREGDVA--VCM 699 Query: 704 KIC---EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753 I E L + G Y + N + RGG+G + K ++GK + + Sbjct: 700 DIAVEDEKLLVVSENG--YGKRTNLDEYKVQNRGGIGLITYKVSDKTGKVVGA 750 >gi|323494793|ref|ZP_08099892.1| DNA gyrase subunit A [Vibrio brasiliensis LMG 20546] gi|323310986|gb|EGA64151.1| DNA gyrase subunit A [Vibrio brasiliensis LMG 20546] Length = 876 Score = 431 bits (1107), Expect = e-118, Method: Compositional matrix adjust. Identities = 249/605 (41%), Positives = 362/605 (59%), Gaps = 57/605 (9%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + V++ L YL YA+S I RA+PD+RDG KPVHRR++ AM+ +G D+ +KKSA Sbjct: 8 ITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSA 67 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG+IDGDSAAA RYTE RM Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVRM 127 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 ++A +L +D++ VD+ Y+ + P V P+K PNLL NG SGIAVGMAT+IP HN+ Sbjct: 128 AKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGASGIAVGMATNIPPHNL 187 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ + LA I+N EI+I++L++YI GPDFPT +I R+ IV++Y+ GRG +R++ Sbjct: 188 GEVIDGCLAYINNEEITIDELMDYIPGPDFPTAALI-SGRKGIVDAYKTGRGKIYMRSKA 246 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFP 315 +E G I+VTEIPYQV K+RLIEKIAEL+ K++ + +RDES +D +RIV+ Sbjct: 247 EIEADKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIEC 306 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 K R ++++ +++ + ++T F +NM L+ G+ PQ+ L +LK ++ HRREV+ RR Sbjct: 307 K-RDAVGEVVLNNLYAQTQLQTTFGINMVALNNGQ-PQLFNLKDMLKCFVDHRREVVTRR 364 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR------------ 420 + + ++ R IL+GL +A NIDEII +IRN P K +V+R Sbjct: 365 TIYELRKARDRAHILEGLALALANIDEIIELIRNAPTPAEAKAGLVARGWDLGNVAAMLE 424 Query: 421 ----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458 + LTE Q AIL+LRL L LE +I E LL E Sbjct: 425 RAGTDAARPDWLEEQYGIRDGQYFLTETQAQAILDLRLHKLTGLEHEKILDEYKALLDEI 484 Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518 ++ +L S ++ I E+ V+E F + RRT E++ A + +I +E Sbjct: 485 AELMHILASTERLMEVIREELESVREAFGDA-----RRT---EITAASHDIDMEELIARE 536 Query: 519 PITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570 + V +S+ G+++ + + SA KE D ++ L A+T D IL ST G Sbjct: 537 DVVVTLSHEGYVKYQILSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILCFSTRG 596 Query: 571 KAYTL 575 K Y L Sbjct: 597 KTYRL 601 >gi|168212010|ref|ZP_02637635.1| DNA gyrase, A subunit [Clostridium perfringens B str. ATCC 3626] gi|170710062|gb|EDT22244.1| DNA gyrase, A subunit [Clostridium perfringens B str. ATCC 3626] Length = 829 Score = 431 bits (1107), Expect = e-118, Method: Compositional matrix adjust. Identities = 276/773 (35%), Positives = 438/773 (56%), Gaps = 54/773 (6%) Query: 11 TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70 +L E V + + +++ Y+ YA+S I RA+PD+RDG KPVHRRI+++M E+GL Sbjct: 2 SLNEGKVIPIDINKEMKKCYIDYAMSVIVGRALPDVRDGLKPVHRRILYSMQELGLYPER 61 Query: 71 AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130 ++K ARIVGEV+GK HPHGD SVYD+LVR+AQ F RY L+ G GNFG++DGDSAAA R Sbjct: 62 GYRKCARIVGEVLGKYHPHGDSSVYDALVRMAQDFSLRYMLVDGHGNFGSVDGDSAAAMR 121 Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190 YTEA+M ++A +L+ ++++ VDF ++ E+ EPVV PS++PNLL NG+SGIAVGMAT+ Sbjct: 122 YTEAKMNKIASEMLRDINKNTVDFIPNFDGEEKEPVVLPSRYPNLLVNGSSGIAVGMATN 181 Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250 IP HN+ E+ + +ALIDNPE++ +L+ YI GPDFPT GII+ + I +Y G+G Sbjct: 182 IPPHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAGIIM-GKSGIRAAYETGKGRI 240 Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDV 309 VRA+ +EE G I+VTE+PYQV K++LIE IA+L+ K+I + D+RDES E + Sbjct: 241 VVRAKAEIEE-ENGRHKIIVTELPYQVNKAKLIEYIADLVKDKKITGISDLRDESDREGM 299 Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369 R+V+ K R +P++ + ++ + M+ F + M L + PQV+ L +L ++ ++ Sbjct: 300 RMVIELK-RDANPNVTLNLLYKHTKMQDTFGVIMLAL-VDNQPQVLNLKQVLVHYINFQK 357 Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTEN 426 +V+ RR+ F + R IL+GL+IA NIDE+I IIR+ K ++ RFSL+E Sbjct: 358 DVITRRTQFELNKAKERAHILEGLIIALDNIDEVINIIRSSKTSEIAKNTLIERFSLSEK 417 Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486 Q AIL +RLR L LE +I++E + L+ + ++++L S ++ I E+ E+K + Sbjct: 418 QAAAILEMRLRRLTGLERDKIENEYNELMKLIDYLNAILASEERLLEVIKEELLEIKAKY 477 Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD------- 539 S RRT ++ + + + +I++E + + +++ G+I+ + S Sbjct: 478 SDE-----RRT---QIEKQENEIDIEDLIQEEDVVITLTHTGYIKRISSDVYSAQKRGGK 529 Query: 540 -LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEAIQLLIDL 596 + A+ KE D ++ L T +L +T GK Y + A + +GR G + ++ L Sbjct: 530 GIQAMTTKEDDFVENVLVTSTHSNLLFFTTKGKVYKIKAYEVPDAGRTAKGTNLVNILPL 589 Query: 597 NHNQDIVTAFVYDST---------CKLLVVSS---KGNAFIVEESEIIANTRKGKTFLKV 644 ++ I T + KL +V K I + I N R+G L+ Sbjct: 590 EADEKIQTVLSFKDVQEDGYLFMGTKLGIVKKTPLKDFKNIRKNGLIALNLREGDELLRA 649 Query: 645 SSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICF 703 ++ VT D A+ F+ + M R GV+ S ++G ++ +C Sbjct: 650 KITYGDADIIFVTQDGNAIR--------FNETDVRPMGRTASGVKAISLREGDVA--VCM 699 Query: 704 KIC---EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753 I E L + G Y + N + RGG+G + K ++GK + + Sbjct: 700 DIAVEDEKLLVVSENG--YGKRTNLDEYKVQNRGGIGLITYKVSDKTGKVVGA 750 >gi|237738560|ref|ZP_04569041.1| DNA gyrase subunit A [Fusobacterium sp. 2_1_31] gi|229424043|gb|EEO39090.1| DNA gyrase subunit A [Fusobacterium sp. 2_1_31] Length = 812 Score = 431 bits (1107), Expect = e-118, Method: Compositional matrix adjust. Identities = 242/621 (38%), Positives = 373/621 (60%), Gaps = 55/621 (8%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 NV + L+E YL Y++S I RA+PD+RDG KPVHRRI+ AM+EMG+ FKKS Sbjct: 3 NVDNRYIEEELKESYLDYSMSVIVSRALPDVRDGLKPVHRRILFAMNEMGMTNDKPFKKS 62 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 ARIVGEV+GK HPHGD +VY ++VR+AQ F RY L+ G GNFG+IDGDSAAA RYTEAR Sbjct: 63 ARIVGEVLGKYHPHGDSAVYGTMVRMAQDFNYRYLLVEGHGNFGSIDGDSAAAMRYTEAR 122 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 M ++ +L+ +D+D +D+R +++ EP V P+K PNLL NG GIAVGMAT+IP HN Sbjct: 123 MEKITAELLEDIDKDTIDWRKNFDDSLDEPTVLPAKLPNLLLNGAIGIAVGMATNIPPHN 182 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 + E+ + LALIDN +I I +L+ +I GPDFPTG II + R I+E+Y+ GRG +VR + Sbjct: 183 LGELVDGILALIDNKDIEILELMNFIKGPDFPTGAII-DGRAGIIEAYKTGRGKIKVRGK 241 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLF 314 +EE G I+V+EIPYQ+ K+ LIEKIA L+ K+I + D+RDES E +RIV+ Sbjct: 242 VDIEEQKNGKANIIVSEIPYQLNKANLIEKIANLVKEKKITEISDLRDESNREGIRIVIE 301 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K + +P+L++ ++ +D++T F + M L + VP+V+ L +L E++ HR EV+ R Sbjct: 302 VK-KGEEPELVLNKLYKYTDLQTTFGVIMLSL-VNNVPRVLNLKEMLNEYIKHRFEVITR 359 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAI 431 R++F + ++R ILKG IA NID II +IR + ++ ++ T+ Q +I Sbjct: 360 RTAFDLDKAEKRAHILKGYQIALENIDRIIELIRASSDGTVAREQLIEKYGFTDIQARSI 419 Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491 L+++L+ L L E+EKID+ ++ +I I+E++E+ + ++ Sbjct: 420 LDMKLQRLTGL--------------EREKIDN-------EYKEIEALIKELREVLADNSK 458 Query: 492 L---------------GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSH 536 + +R T E R + L + +I+ E I + +N+G+++ +++ Sbjct: 459 IYEIMKKELLELKEKYNDKRRTQIEEERME--ILPEDLIKDEEIIITYTNKGYVKRIEAS 516 Query: 537 SVD--------LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGH 586 +SAL+ E D + + A T D +++ + GK Y + A + LS + Sbjct: 517 KYKAQRRGGRGVSALNTIEDDYAEKIITASTLDTMMIFTDKGKVYNIRAYEIPDLSKQSR 576 Query: 587 GEAIQLLIDLNHNQDIVTAFV 607 G I +I+L+ + + V Sbjct: 577 GRLIGNIINLSEGEKVRDTIV 597 >gi|323497716|ref|ZP_08102731.1| DNA gyrase subunit A [Vibrio sinaloensis DSM 21326] gi|323317192|gb|EGA70188.1| DNA gyrase subunit A [Vibrio sinaloensis DSM 21326] Length = 877 Score = 431 bits (1107), Expect = e-118, Method: Compositional matrix adjust. Identities = 274/725 (37%), Positives = 412/725 (56%), Gaps = 64/725 (8%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + V++ L YL YA+S I RA+PD+RDG KPVHRR++ AM+ +G D+ +KKSA Sbjct: 8 ITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSA 67 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG+IDGDSAAA RYTE RM Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVRM 127 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 ++A +L +D++ VD+ Y+ + P V P+K PNLL NG SGIAVGMAT+IP HN+ Sbjct: 128 AKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGASGIAVGMATNIPPHNL 187 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ + LA I+N EI+I++L++YI GPDFPT +I R+ IV++Y+ GRG +R++ Sbjct: 188 TEVIDGCLAYINNEEITIDELMDYIPGPDFPTAALI-SGRKGIVDAYKTGRGKIYMRSKA 246 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFP 315 VE G I+VTEIPYQV K+RLIEKIAEL+ K++ + +RDES +D +RIV+ Sbjct: 247 EVEADKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIEC 306 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 K R ++++ +++ + ++T F +NM L+ G+ PQ+ L +LK ++ HRREV+ RR Sbjct: 307 K-RDAVGEVVLNNLYANTQLQTTFGINMVALNNGQ-PQLFNLKDMLKCFVDHRREVVTRR 364 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR------------ 420 + F ++ R IL+GL +A NIDEII +IR P K +V+R Sbjct: 365 TIFELRKARERAHILEGLALALANIDEIIDLIRKAPTPAEAKAGLVARGWDLGNVAAMLE 424 Query: 421 ----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458 + LTE Q AIL+LRL L LE +I E LL E Sbjct: 425 RAGTDAARPEWLEAQYGIRDGQYFLTETQAQAILDLRLHKLTGLEHEKILDEYKALLDEI 484 Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518 ++ +L S ++ I E+ V++ F + RRT E++ A + +I +E Sbjct: 485 AELMHILASTERLMEVIREELETVRDAFGDA-----RRT---EITAASHDIDMEELIARE 536 Query: 519 PITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570 + V +SN G+++ + + SA K+ D ++ L A+T D IL ST G Sbjct: 537 DVVVTLSNAGYVKYQILSDYEAQRRGGKGKSATKMKDEDYIERLLVANTHDNILCFSTRG 596 Query: 571 KAYTLPAGNL-LSGR-GHGEAIQLLIDLNHNQDIVTAFVYDS-TCKLLVVSSKGNAFIVE 627 K Y L L L+ R G+ I ++ L + I D + + + + G+ + + Sbjct: 597 KTYRLKVYQLPLASRTARGKPIVNILPLEEGERITAILPVDEFSPEKFIFMATGDGTVKK 656 Query: 628 ES-EIIANTR-KGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR- 683 S + AN R G + + ++ + V GD + + + K++ F+ D++ M R Sbjct: 657 TSLDQFANVRSNGLIAVNLRDDDSLIGVDITNGDSDIMLFSKAGKVVRFNEDKVRAMGRT 716 Query: 684 GKGVR 688 GVR Sbjct: 717 AAGVR 721 >gi|304405882|ref|ZP_07387540.1| DNA gyrase, A subunit [Paenibacillus curdlanolyticus YK9] gi|304345125|gb|EFM10961.1| DNA gyrase, A subunit [Paenibacillus curdlanolyticus YK9] Length = 825 Score = 431 bits (1107), Expect = e-118, Method: Compositional matrix adjust. Identities = 261/699 (37%), Positives = 423/699 (60%), Gaps = 42/699 (6%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 +K + + + ++ YA+S I RA+PD+RDG KPVHRRI++AMSE+G+ +KKSA Sbjct: 9 IKDRDIGIEMRDSFMDYAMSIIVSRALPDVRDGLKPVHRRILYAMSELGMSPDKPYKKSA 68 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 RIVGEVIGK HPHGD +VY+S+VR+AQ F R L+ G GNFG+IDGD AAA RYTEAR+ Sbjct: 69 RIVGEVIGKYHPHGDSAVYESMVRMAQDFSMRNMLVDGHGNFGSIDGDMAAAMRYTEARL 128 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 +++A +L+ +++D VDF Y+ E+ EPVV PS++PNLL NG +GIAVGMAT+IP HN+ Sbjct: 129 SKIAMELLRDLNKDTVDFAPNYDGEEHEPVVLPSRYPNLLVNGVTGIAVGMATNIPPHNL 188 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 +E+ + ALI NP+I+ +L+EYI GPDFPT G ++ I ++Y GRG +RAR Sbjct: 189 REVIDGVQALIVNPDITSIELMEYIKGPDFPTYGYVM-GHSGIRQAYTTGRGSVTMRARA 247 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316 +E+ G G I+V E+PYQV K+RL+EKIAEL+ K+I + D+RDES + V+ Sbjct: 248 IIEDNG-GKARIIVHELPYQVIKARLVEKIAELVREKKIEGITDLRDESDRNGMRVVIEL 306 Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376 R ++P++++ +++ + M++ F +NM L + R P+V+ L +L +L H+ E++ RR+ Sbjct: 307 RRDVNPNVVLNNLYKQTQMQSTFGINMLAL-VNREPKVLNLRDMLYHYLQHQIEIIRRRT 365 Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAILN 433 + ++ + R IL+GL IA ++DE+IA+IR D+ + +++RFSL+ Q AIL+ Sbjct: 366 EYDLKKAEARAHILEGLRIALDHLDEVIALIRGSRTADEAREGLITRFSLSLEQAQAILD 425 Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493 +RL+ L LE +I++E LLA+ + ++L + + I+ E+ E+KE F Sbjct: 426 MRLQRLTGLERDKIEAEYAELLAKIAEYKAILADEQLVLDIISTELNEIKERFGDD---- 481 Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHF 545 RRT E++ + L + +I +E + + I++ G++ RS + + + Sbjct: 482 -RRT---EITIGEDEILDEDLIPREDVIISITHSGYVKRLPVTTYRSQRRGGRGVIGMDT 537 Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIV 603 K+ D ++ ++T +L + GK Y L A + LS G I L+ + + +V Sbjct: 538 KDDDFVEHLFVSNTHHYLLFFTDKGKVYRLKAYEIPDLSRTARGTPIINLLQIEQGE-VV 596 Query: 604 TAFV----YDSTCKLLVVSSKGNAFIVEESEI--IANTRKGKTFLKVSSEEKMKLV-VKV 656 A + +D+ L + +G +V+++ + AN RK + +S E L+ VK+ Sbjct: 597 NAVIPVEAFDNDKYLFFATRQG---VVKKTPLDDYANIRK-VGLIAISLREDDDLISVKL 652 Query: 657 T-GDHVAVVGENRKLLI-FSIDQIPEMSRG----KGVRL 689 T G+ ++G ++ + I F + M R KG++L Sbjct: 653 TDGNQEIIMGTSQGMSIRFPEQDVRSMGRSATGVKGIQL 691 >gi|242281241|ref|YP_002993370.1| DNA gyrase, A subunit [Desulfovibrio salexigens DSM 2638] gi|242124135|gb|ACS81831.1| DNA gyrase, A subunit [Desulfovibrio salexigens DSM 2638] Length = 817 Score = 430 bits (1106), Expect = e-118, Method: Compositional matrix adjust. Identities = 239/602 (39%), Positives = 364/602 (60%), Gaps = 24/602 (3%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 +++ L++ YL Y+LS I RAIPD+RDG KPVHRRI++AM E+G + ++KKSAR+V Sbjct: 4 ITIEEELKKSYLEYSLSVIIGRAIPDVRDGLKPVHRRILYAMHELGNTYNRSYKKSARVV 63 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGD +VYD+LVR+AQ F R PL+ GQGNFG+IDGD+AAA RYTEARM+++ Sbjct: 64 GDVIGKYHPHGDSAVYDALVRMAQEFSMRDPLVDGQGNFGSIDGDAAAAMRYTEARMSKL 123 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 + L +++ VDFRD Y+ EP V P+K PNLL NGTSGIAVGMAT+IP HN+ E+ Sbjct: 124 SSEFLADLEKKTVDFRDNYDNSLQEPSVLPTKVPNLLLNGTSGIAVGMATNIPPHNLGEL 183 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 + L+DNPE IE L+++I GPDFPTG + + + E+Y GRG ++R +E Sbjct: 184 INGTVHLLDNPECEIEDLMDFIKGPDFPTGALCFGGK-GLREAYLTGRGSIKIRGVVNIE 242 Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFPKNR 318 E G IV+TEIPY + KS ++EKIA+L+ +I + D+RDES + +R+V+ K Sbjct: 243 EKKNGRQSIVITEIPYALNKSSMVEKIAQLVGEGKIEGVSDLRDESDRKGIRVVVDLKKG 302 Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378 ++ D+++ S++ + +E F +NM ++ R PQ+M L IL +L HRREV+ RR+ F Sbjct: 303 AI-ADIIINSLYKFTQLEQSFGINMMAVNANR-PQLMNLKQILAAFLEHRREVIIRRTRF 360 Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAILNLR 435 + ++R IL+GL IA NIDE++ IIR N D+ + ++ RF L++ Q AIL++R Sbjct: 361 DLDKCEKRAHILEGLRIALDNIDEVVKIIRGSSNGDEARIGLMDRFELSKVQAQAILDMR 420 Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495 L+ L LE ++ E +L + E S+L + + I E+ E+K+ ++ R Sbjct: 421 LQRLTNLEHEKLLEEYAEILKKIEYFKSILANEEVLKGVIRDELVEIKDNYATE-----R 475 Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSVDLSALHFKE 547 +T + + D + +I + + +S RG+I+ K ++ + K+ Sbjct: 476 KTVLMDHNPDDIDI--EDLIPDDDAVITLSRRGYIKRTPLSNYQKQKRGGKGIAGVQTKD 533 Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTA 605 GD + L +LL ++ GK + + + S G I L+ L ++ I TA Sbjct: 534 GDFIHTFLTTSNHQYLLLFTSKGKMFKIKVHQVPEASRIARGAHIANLLPLEKDETIATA 593 Query: 606 FV 607 Sbjct: 594 MT 595 >gi|28898706|ref|NP_798311.1| DNA gyrase subunit A [Vibrio parahaemolyticus RIMD 2210633] gi|153839549|ref|ZP_01992216.1| DNA gyrase, A subunit [Vibrio parahaemolyticus AQ3810] gi|260363695|ref|ZP_05776479.1| DNA gyrase, A subunit [Vibrio parahaemolyticus K5030] gi|260879738|ref|ZP_05892093.1| DNA gyrase, A subunit [Vibrio parahaemolyticus AN-5034] gi|260898788|ref|ZP_05907229.1| DNA gyrase, A subunit [Vibrio parahaemolyticus Peru-466] gi|260901601|ref|ZP_05909996.1| DNA gyrase, A subunit [Vibrio parahaemolyticus AQ4037] gi|28806924|dbj|BAC60195.1| DNA gyrase, subunit A [Vibrio parahaemolyticus RIMD 2210633] gi|149746930|gb|EDM57918.1| DNA gyrase, A subunit [Vibrio parahaemolyticus AQ3810] gi|308086608|gb|EFO36303.1| DNA gyrase, A subunit [Vibrio parahaemolyticus Peru-466] gi|308093282|gb|EFO42977.1| DNA gyrase, A subunit [Vibrio parahaemolyticus AN-5034] gi|308108685|gb|EFO46225.1| DNA gyrase, A subunit [Vibrio parahaemolyticus AQ4037] gi|308113396|gb|EFO50936.1| DNA gyrase, A subunit [Vibrio parahaemolyticus K5030] Length = 878 Score = 430 bits (1106), Expect = e-118, Method: Compositional matrix adjust. Identities = 271/725 (37%), Positives = 414/725 (57%), Gaps = 64/725 (8%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + V++ L YL YA+S I RA+PD+RDG KPVHRR++ AM+ +G D+ +KKSA Sbjct: 8 ITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSA 67 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG+IDGDSAAA RYTE RM Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVRM 127 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 ++A +L +D++ VD+ Y+ + P V P+K PNLL NG SGIAVGMAT+IP HN+ Sbjct: 128 AKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGASGIAVGMATNIPPHNL 187 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ + LA I+N EI+I++L++YI GPDFPT +I R+ IV++Y+ GRG +R++ Sbjct: 188 GEVIDGCLAYINNEEITIDELMDYIPGPDFPTAALI-SGRKGIVDAYKTGRGKIYMRSKA 246 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFP 315 +E G I+VTEIPYQV K+RLIEKIAEL+ K++ + +RDES +D +RIV+ Sbjct: 247 EIETEKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIEC 306 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 K ++ ++++ +++ + ++T F +NM L+ G+ PQ+ L +LK ++ HRREV+ RR Sbjct: 307 KRDAVG-EVVLNNLYAQTQLQTTFGINMVALNNGQ-PQLFNLKDMLKCFVDHRREVVTRR 364 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR------------ 420 + F ++ R IL+GL +A NIDEII +IR P K +++R Sbjct: 365 TIFELRKARERAHILEGLALALANIDEIIDLIRKAPTPAEAKAGLIARGWDLGNVAAMLE 424 Query: 421 ----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458 + LTE Q AIL+LRL L LE +I +E LL E Sbjct: 425 RAGTDAARPEWLEPQYGIRDGQYFLTEQQAQAILDLRLHKLTGLEHEKILAEYKELLEEI 484 Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518 ++ +L S ++ I E+ V++ F+ + RRT E++ A + +I +E Sbjct: 485 AELMHILASTERLMEVIREELEAVRDGFADA-----RRT---EITAASHDIDMEELIARE 536 Query: 519 PITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570 + V +S+ G+++ + + SA K+ D ++ L A+T D IL ST G Sbjct: 537 DVVVTLSHEGYVKYQILSDYEAQRRGGKGKSATRMKDEDYIERLLVANTHDNILCFSTRG 596 Query: 571 KAYTLPAGNL-LSGR-GHGEAIQLLIDLNHNQDIVTAFVYDS-TCKLLVVSSKGNAFIVE 627 K Y L L L+ R G+ I ++ L + I D + + + G+ + + Sbjct: 597 KTYRLKVYQLPLASRTARGKPIVNILPLEDGERITAILPVDEFSADKFIFMATGDGTVKK 656 Query: 628 ES-EIIANTR-KGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR- 683 S + AN R G + + ++ + V TG + + + K++ FS D++ M R Sbjct: 657 TSLDQFANVRSNGLIAVNLRDDDSLIGVDITTGSSDIMLFSKAGKVVRFSEDKVRAMGRT 716 Query: 684 GKGVR 688 GVR Sbjct: 717 AAGVR 721 >gi|253573847|ref|ZP_04851189.1| DNA gyrase, A subunit [Paenibacillus sp. oral taxon 786 str. D14] gi|251846324|gb|EES74330.1| DNA gyrase, A subunit [Paenibacillus sp. oral taxon 786 str. D14] Length = 840 Score = 430 bits (1106), Expect = e-118, Method: Compositional matrix adjust. Identities = 257/689 (37%), Positives = 411/689 (59%), Gaps = 40/689 (5%) Query: 26 LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85 + E ++ YA+S I RA+PD+RDG KPVHRRI++AMS++G+ FKKSARIVGEVIGK Sbjct: 18 MRESFMDYAMSIIVSRALPDVRDGLKPVHRRILYAMSDLGMHPDKPFKKSARIVGEVIGK 77 Query: 86 LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145 HPHGD +VY+++VR+AQ F RY L+ G GNFG++DGD AAA RYTEAR++++A +L+ Sbjct: 78 YHPHGDSAVYETMVRMAQDFSMRYMLVEGHGNFGSVDGDMAAAMRYTEARLSKIAMEMLR 137 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 ++++ +DF Y+ E+ EPVV PS+FPNLL NG SGIAVGMAT+IP HN+ E+ + A Sbjct: 138 DINKETIDFMPNYDGEEQEPVVLPSRFPNLLVNGVSGIAVGMATNIPPHNLGEVIDGVQA 197 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265 LI NPEIS +L++YI GPDFPT I+ R I ++Y GRG +RA+ +EE + Sbjct: 198 LIKNPEISSLELMDYIKGPDFPTAAYIL-GRSGIRQAYTTGRGSITMRAKTTIEEHNNKA 256 Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325 IVV E+PYQV K+RL+EKIAEL+ K+I + D+RDES V+ R ++P+++ Sbjct: 257 R-IVVEELPYQVNKARLVEKIAELVREKKIDGITDLRDESDRTGMRVVIELRRDVNPNVV 315 Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385 + +++ + +++ F +NM + + P+++ L +L +L H+ EV+ RR+ F ++ + Sbjct: 316 LNNLYKHTALQSTFGINMLAI-VNNEPKILTLKDVLSHYLQHQVEVVRRRTEFDLKKAEA 374 Query: 386 RVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKL 442 R IL+GL IA +IDE+IA+IR ++++ + +++RF L+ Q AIL++RLR L L Sbjct: 375 RAHILEGLRIALDHIDEVIALIRGSNSDEEAREGLITRFGLSLEQAQAILDMRLRRLTGL 434 Query: 443 EEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEV 502 E +I+ E + LL + + +L + + I E++E++E ++ RRT E+ Sbjct: 435 EREKIEDEYNELLQKIAEYREILANEQLVLKIIGEELQEIRERYADE-----RRT---EI 486 Query: 503 SRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIA 554 + +++ L + +I +E + + I++ G+I RS K + + K+ D ++ Sbjct: 487 TIGEESILDEDLIPQEEVVITITHTGYIKRLPVTTYRSQKRGGRGVVGMDTKDNDFVEHL 546 Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAFV----Y 608 ++ ++ + GKAY L A + L G I LI + + V A + + Sbjct: 547 FVTNSHHYLMFFTDRGKAYRLKAYEIPELGRTARGTPIINLIQIEQGE-TVNAVIEVERF 605 Query: 609 DSTCKLLVVSSKGNAFIVEESEI--IANTRKGKTFLKVSSEEKMKLVVKVT-GDHVAVVG 665 D L + +G IV+++ I N RKG E+ + VK+T G+ ++G Sbjct: 606 DDNKYLFFATKQG---IVKKTPIEDYINIRKGGLIAVNLREDDTLIDVKLTDGNEEVIMG 662 Query: 666 ENRKLLI-FSIDQIPEMSRG----KGVRL 689 + + I F + M R KG+ L Sbjct: 663 TAQGMSIRFPESDVRSMGRAATGVKGITL 691 >gi|315151296|gb|EFT95312.1| DNA gyrase, A subunit [Enterococcus faecalis TX0012] Length = 828 Score = 430 bits (1106), Expect = e-118, Method: Compositional matrix adjust. Identities = 268/771 (34%), Positives = 444/771 (57%), Gaps = 57/771 (7%) Query: 13 VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72 ++EN++ V+L ++E ++ YA+S I RA+PD+RDG KPVHRRI++ M+E+G+ Sbjct: 5 IKENIQDVNLTSEMKESFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 64 Query: 73 KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132 KKSARIVG+V+GK HPHGD ++Y+S+VR+AQPF R L+ G GNFG++DGD AAA RYT Sbjct: 65 KKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRAMLVDGHGNFGSVDGDGAAAMRYT 124 Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192 EARM+++A +L+ ++++ VDF+ Y++ + EPVV P++FPNLL NGT+GIAVGMAT+IP Sbjct: 125 EARMSKIALEMLRDINKNTVDFQGNYDDSEQEPVVLPARFPNLLVNGTTGIAVGMATNIP 184 Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252 HN+ E+ +A L+DNP+++ +L+E + GPDFPTGG+++ + I +Y G+G V Sbjct: 185 PHNLSEVIDATSLLMDNPDVTTNELMEVLPGPDFPTGGLVM-GKSGIRRAYETGKGSITV 243 Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRI 311 RA+ + E+ G I+VTE+PY V K++LIE+I+EL KRI + D+RDES+ E +RI Sbjct: 244 RAKVELTEMPNGKERILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMRI 303 Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371 V+ + R + +++ +++ ++ ++T F NM + G VP+++ L IL+ ++ H++EV Sbjct: 304 VIDVR-RDVSASVVLNNLYKMTALQTSFGFNMLAIEKG-VPKILSLKRILENYVEHQKEV 361 Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQV 428 + RR+ F + R IL+GL IA +IDEIIAIIR ++D+ K ++ RF ++ Q Sbjct: 362 ITRRTIFDKNKAEARAHILEGLRIALDHIDEIIAIIRGSQSDDEAKATLIERFEFSDRQA 421 Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488 AIL++RLR L LE +I++E LL ++ +L ++ I E+ +V+ F Sbjct: 422 QAILDMRLRRLTGLERDKIENEYQELLKFIADLEDILARPERVIEIIKTELNDVRTKFGD 481 Query: 489 STDLGRRRTTFC--EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV-------- 538 + RRT EV + + +IE+E + + ++N G+I+ + + Sbjct: 482 A-----RRTELLVGEVL----SLEDEDLIEEEEVVITLTNNGYIKRMANSEFRAQRRGGR 532 Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY---------------TLPAGNLLSG 583 + + + D +K + T D +L + GK Y +P NLL G Sbjct: 533 GVQGMGVHDDDFVKKLVSCSTHDTLLFFTNTGKVYRAKGYEIPEYGRTAKGIPVINLL-G 591 Query: 584 RGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLK 643 E IQ +I + + +++ +T K V + AF S I +N G + Sbjct: 592 IDSAEKIQAIISVEGKAE-AGKYLFFTTLKGTVKRTAVTAF----SNIRSN---GLIAIS 643 Query: 644 VSSEEKMKLVVKVTGDHVAVVGENRKL-LIFSIDQIPEMSRG----KGVRLQSYKDGGIS 698 + ++++ VV G+ ++G + + F + + +M R +G+RL+ D + Sbjct: 644 LKEDDELVNVVTTNGNQKMIIGTHAGYSVTFDENTVRDMGRTASGVRGIRLRE-NDYVVG 702 Query: 699 DVICFKICEGLTWIDSA-GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG 748 I + E L ++ G+ SE + G GK ++ K P +G Sbjct: 703 AAILDENKEVLVITENGYGKRTKASEYPVKGRGGKGIKTANITEKNGPLAG 753 >gi|315179992|gb|ADT86906.1| DNA gyrase, subunit A [Vibrio furnissii NCTC 11218] Length = 877 Score = 430 bits (1106), Expect = e-118, Method: Compositional matrix adjust. Identities = 274/729 (37%), Positives = 415/729 (56%), Gaps = 72/729 (9%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + V++ L YL YA+S I RA+PD+RDG KPVHRR++ AM+ +G D+ A+KKSA Sbjct: 8 ITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKKSA 67 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG+IDGDSAAA RYTE RM Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVRM 127 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 ++A +L +D++ VD+ Y+ + P V P+K PNLL NG SGIAVGMAT+IP HN+ Sbjct: 128 AKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGASGIAVGMATNIPPHNL 187 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ + LA IDN I+I++L++YI GPDFPT +I R+ IV++Y+ GRG +R++ Sbjct: 188 TEVIDGCLAFIDNESITIDELMDYIPGPDFPTAALI-SGRKGIVDAYKTGRGKIYMRSKA 246 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFP 315 +E G I+VTEIPYQV K+RLIEKIAEL+ K++ + +RDES +D +RIV+ Sbjct: 247 EIEADKHGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIEC 306 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 K R ++++ +++ + ++T F +NM L G+ P++ L +LK ++ HRREV+ RR Sbjct: 307 K-RDAVGEVVLNNLYANTQLQTTFGINMVALDNGQ-PKLFNLKDMLKCFVDHRREVVTRR 364 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR------------ 420 + F ++ R IL+GL +A NID+II +IR P K +V+R Sbjct: 365 TIFELRKARERAHILEGLALALANIDDIIDLIRKASTPAEAKAGLVARGWALGNVAAMLE 424 Query: 421 ----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458 + LTE Q AIL+LRL L LE +I E LL E Sbjct: 425 RAGTDAARPEWLEPQYGIRDGQYFLTEQQAQAILDLRLHKLTGLEHEKILDEYKQLLEEI 484 Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518 ++ +L S ++ I E++ V++ + + RRT E++ A + +I +E Sbjct: 485 AELMHILASTERLMEVIREELQAVRDGYGDA-----RRT---EITAASHDIDLEELIARE 536 Query: 519 PITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570 + V +S+ G+++ + + SA K+ D ++ L A+T D IL ST G Sbjct: 537 DVVVTLSHEGYVKYQLLSDYEAQRRGGKGKSATRMKDEDYIERLLVANTHDNILCFSTRG 596 Query: 571 KAYTLPAGNL-LSGR-GHGEAIQLLIDLNHNQDI-----VTAFVYDSTCKLLVVSSKGNA 623 K Y + L L+ R G+ I L+ L N+ I VT F D + + G+ Sbjct: 597 KTYRMKVYQLPLASRTARGKPIVNLLPLEDNERITAILPVTEFSDDK----FIFMATGDG 652 Query: 624 FIVEES-EIIANTR-KGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPE 680 + + S + +N R G + + ++ + V GD + + ++ K++ F+ DQ+ Sbjct: 653 TVKKTSLDQFSNVRSNGLIAVNLRDDDSLIGVDITNGDSEIMLFSKSGKVVRFNEDQVRA 712 Query: 681 MSR-GKGVR 688 M R GVR Sbjct: 713 MGRTASGVR 721 >gi|332702341|ref|ZP_08422429.1| DNA gyrase, A subunit [Desulfovibrio africanus str. Walvis Bay] gi|332552490|gb|EGJ49534.1| DNA gyrase, A subunit [Desulfovibrio africanus str. Walvis Bay] Length = 827 Score = 430 bits (1106), Expect = e-118, Method: Compositional matrix adjust. Identities = 262/695 (37%), Positives = 406/695 (58%), Gaps = 34/695 (4%) Query: 19 AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78 VS++ +E+ YL Y+LS I RAIPD+RDG KPVHRRI++AM E+G + A+KKSAR+ Sbjct: 6 TVSIKSEIEKSYLEYSLSVIIGRAIPDVRDGLKPVHRRILYAMHELGNSYNRAYKKSARV 65 Query: 79 VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138 VG+VIGK HPHGDQSVYD+LVR+AQ F R ++ GQGNFG+IDGD+AAA RYTE RM++ Sbjct: 66 VGDVIGKYHPHGDQSVYDALVRMAQDFSMRDLVVDGQGNFGSIDGDAAAAMRYTEVRMSR 125 Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198 +A L ++++ VDFR Y+ EP V P+K PNLL NGTSGIAVGMAT+IP HN+ E Sbjct: 126 LASEFLADIEKETVDFRPNYDNSLQEPAVLPTKVPNLLLNGTSGIAVGMATNIPPHNLGE 185 Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258 + +A L L+DNPE + L ++ GPDFPT R ++++Y GRG ++R V Sbjct: 186 LMDATLHLLDNPECTPRDLTAFVKGPDFPTAASCYGGR-GLMDAYETGRGSIKIRGTVAV 244 Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFPKN 317 EE G IV++EIP+ + KS L+EKIA LI KRI + D+RDES + +RIVL K Sbjct: 245 EEKKGGRESIVISEIPFALNKSSLVEKIAALINDKRIDGVSDLRDESDRKGIRIVLDLKK 304 Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377 ++ PD+++ ++ + +E+ F +NM + +G P ++ L IL +L HRREV+ RR+ Sbjct: 305 GAI-PDIIINMLYKFTPLESSFGINMMAV-VGSRPMLLNLKSILDYFLQHRREVILRRTR 362 Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAILNL 434 F + ++R IL+GLLIA NIDE++ IIR+ + K ++ RF L++ Q AIL++ Sbjct: 363 FDLDKAEKRAHILEGLLIALDNIDEVVRIIRSSATALEAKSRLMERFGLSDVQSQAILDM 422 Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494 RL+ L LE+ +++ E LL + E + S+L + + I E+ EV+ IF+ Sbjct: 423 RLQRLVNLEQEKLREEFAELLKKIEYLKSILTNEEVLKGVIREELSEVRRIFATP----- 477 Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSVD------LSALHFK 546 R+T E D ++ +I E + + +S RG+I+ +L S+ +S + Sbjct: 478 RKTVILE-QDLDSIDIED-LIADEEVVLTLSRRGYIKRTTLDSYQQQKRGGKGISGVLTG 535 Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQDIVT 604 + D + +LL + G+ + L + G G I L+ L+ ++ + T Sbjct: 536 DDDFVHTFCSTSNHQYLLLFTNRGRMHQLKVHQVPEGGRYAKGSHIANLLPLDKDEHVTT 595 Query: 605 AFV---YDSTCKLLVVSSKGNAFIVEESEIIANTR-KGKTFLKVSSEEKMKLVVKVTG-D 659 A + + V+ +G + + AN R G + + ++++ +V ++ G D Sbjct: 596 ALTVREFAEHNYFMFVTKRG-MIKKTSASLYANVRSSGVRAVNLRDDDELIMVREINGRD 654 Query: 660 HVAVVGENRKLLIFSIDQIPEMSRG----KGVRLQ 690 + +V + F+ +I + RG KG+ L+ Sbjct: 655 ELILVTAEGTSIRFTSAEIRPIGRGATGVKGIALR 689 >gi|254302373|ref|ZP_04969731.1| DNA topoisomerase (ATP-hydrolyzing) [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148322565|gb|EDK87815.1| DNA topoisomerase (ATP-hydrolyzing) [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 811 Score = 430 bits (1106), Expect = e-118, Method: Compositional matrix adjust. Identities = 244/623 (39%), Positives = 384/623 (61%), Gaps = 28/623 (4%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 NV + L+E YL Y++S I RA+PD+RDG KPVHRRI+ AM+EMG+ FKKS Sbjct: 3 NVDNRYIEEELKESYLDYSMSVIVSRALPDVRDGLKPVHRRILFAMNEMGMTNDKPFKKS 62 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 ARIVGEV+GK HPHGD +VY ++VR+AQ F RY L+ G GNFG+IDGDSAAA RYTEAR Sbjct: 63 ARIVGEVLGKYHPHGDSAVYGTMVRMAQDFNYRYLLVEGHGNFGSIDGDSAAAMRYTEAR 122 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 M ++ +L+ +D+D +D+R +++ EP V P+K PNLL NG GIAVGMAT+IP HN Sbjct: 123 MEKITAELLEDIDKDTIDWRKNFDDSLDEPTVLPAKLPNLLLNGAIGIAVGMATNIPPHN 182 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 + E+ + LA+IDN +I I +L+ YI GPDFPTG II + R I+E+Y+ GRG +VR + Sbjct: 183 LGELVDGILAIIDNKDIEILELMNYIKGPDFPTGAII-DGRAGIIEAYKTGRGKIKVRGK 241 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLF 314 +EE G I+V+EIPYQ+ K+ LIEKIA L+ K+I + D+RDES E +RI++ Sbjct: 242 VDIEEQKNGKSNIIVSEIPYQLNKANLIEKIANLVKEKKITEISDLRDESNREGIRILIE 301 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K + +P+L++ ++ +D++T F + M L + VP+V+ L +L E++ HR +V+ R Sbjct: 302 VK-KGEEPELVLNKLYKYTDLQTTFGVIMLSL-VNNVPRVLNLKEMLNEYIKHRFDVITR 359 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAI 431 R+ F + ++R ILKG IA NID II +IR + ++ +++ T+ Q +I Sbjct: 360 RTVFDLDKAEKRAHILKGYQIALENIDRIIELIRASSDGTVAREQLIEKYAFTDIQARSI 419 Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491 L+++L+ L LE +I +E + A +++ +L + + + E+ E+KE ++ Sbjct: 420 LDMKLQRLTGLEREKIDTEFKEIEALIKELREVLEDNNKIYEIMKKELLELKEKYND--- 476 Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD--------LSAL 543 +RRTT E R + L + +I+ E I + +N+G+++ +++ +SAL Sbjct: 477 --KRRTTIEE-ERME--ILPEDLIKDEEIIITYTNKGYVKRIEASKYKAQRRGGRGVSAL 531 Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQD 601 + E D + + A T D I++ + GK Y + A + LS + G + +I+L+ + Sbjct: 532 NTIEDDFAEKIISASTLDTIMVFTDKGKVYNIRAYEIPDLSKQSRGRLLSNIINLSEGEK 591 Query: 602 IVTAFV---YDSTCKLLVVSSKG 621 + V + S +++ ++ G Sbjct: 592 VRDTIVIKEFSSEKEVVFITKNG 614 >gi|49475756|ref|YP_033797.1| DNA gyrase subunit A [Bartonella henselae str. Houston-1] gi|49238563|emb|CAF27803.1| DNA gyrase subunit a [Bartonella henselae str. Houston-1] Length = 931 Score = 430 bits (1106), Expect = e-118, Method: Compositional matrix adjust. Identities = 257/700 (36%), Positives = 391/700 (55%), Gaps = 69/700 (9%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 ++ VS+ ++ YL YA+S I RA+PD+RDG KPVHRRI+HAM+EMGL F ++KSA Sbjct: 16 IEPVSIIDEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAMNEMGLSFNKPYRKSA 75 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 +VGEV+GK HPHGD S+YD+LVR+AQ F R PLI GQGNFG++DGD AA RYTE R+ Sbjct: 76 GVVGEVMGKFHPHGDASIYDALVRMAQDFSLRNPLIDGQGNFGSVDGDPPAAMRYTECRL 135 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 +V+E +L +D+D VDF+D Y+ + EPVV P++FPNLL NG+ GIAVGMAT+IP HN+ Sbjct: 136 EKVSEELLADIDKDTVDFQDNYDGREREPVVLPARFPNLLVNGSGGIAVGMATNIPPHNL 195 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ +A +ALIDNP+I+++K++E I GPDFPTGGII+ + +Y GRG +RA+ Sbjct: 196 GEVLDACIALIDNPDITLDKIIEIIPGPDFPTGGIIL-GHSGVRSAYETGRGSIIMRAKV 254 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316 +EE G I+V+EIPYQV K+ +IEK+AEL+ KRI + D+RDES D V+ Sbjct: 255 DIEETRNGRQAIIVSEIPYQVNKATMIEKMAELVRDKRIEGISDLRDESDRDGYRVVIEL 314 Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376 R + D+++ ++ + ++T F NM L+ G+ P+ M L +L+ +++ R EV+ RR+ Sbjct: 315 KRDVIADVVLNQLYRYTPLQTSFGCNMVALNGGK-PEQMTLLDMLRAFVSFREEVVSRRT 373 Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV------------------ 418 + ++ R +L GL +A NIDEIIA+IR P+ + Sbjct: 374 KYLLRKARERAHVLVGLALAVANIDEIIALIRKAPDPQTARIKLMERRWPAADVAPLIKL 433 Query: 419 -----------SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467 + ++L+E Q AIL LRL+ L L +I EL+ + + +L S Sbjct: 434 IDDPRHIIHADNTYNLSEEQARAILELRLQRLTALGRDEIADELNKIGVDITDYLHILAS 493 Query: 468 GKQQWNQIACEIREVKEIFSKSTDLGRRRTTF----CEVSRADKATLQQAMIEKEPITVV 523 + + I E+ ++E F+ RRT F E+ D +I E + V Sbjct: 494 RSRIMSIIKDELNVLREAFATP-----RRTVFGFGSAEMDCED-------LIAPEDMVVT 541 Query: 524 ISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG----- 570 +S+ G+I R+ + S + K+ D + +T +L ST G Sbjct: 542 VSHSGYIKRVPLSTYRAQRRGGKGRSGMSTKDEDFVTRLFVVNTHTPVLFFSTRGIVYKE 601 Query: 571 KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD------STCKLLVVSSKGNAF 624 K + LP G + + G A+ ++ L + I T S ++ +++G Sbjct: 602 KVWRLPLG---TPQSRGRALINMLPLQQGERITTIMPLPEDEARWSALDVMFATTRGTVR 658 Query: 625 IVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVV 664 + S+ + R GK +K+ E+++ V T H V+ Sbjct: 659 RNKLSDFVQINRNGKIAMKLDEEDEILSVETCTERHDVVL 698 >gi|148358948|ref|YP_001250155.1| DNA gyrase subunit A [Legionella pneumophila str. Corby] gi|296106997|ref|YP_003618697.1| DNA gyrase, subunit A, type II topoisomerase [Legionella pneumophila 2300/99 Alcoy] gi|148280721|gb|ABQ54809.1| DNA gyrase, subunit A, type II topoisomerase [Legionella pneumophila str. Corby] gi|295648898|gb|ADG24745.1| DNA gyrase, subunit A, type II topoisomerase [Legionella pneumophila 2300/99 Alcoy] Length = 863 Score = 430 bits (1106), Expect = e-118, Method: Compositional matrix adjust. Identities = 286/802 (35%), Positives = 438/802 (54%), Gaps = 87/802 (10%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 V V++ L++ YL YA+S I RA+PD+RDG KPVHRR++ AMSE+G D+ +KKSA Sbjct: 8 VLPVNIEDELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELGNDWNKPYKKSA 67 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD +VYD++VR+AQPF RY LI GQGNFG++DGD+ AA RYTE RM Sbjct: 68 RVVGDVIGKYHPHGDTAVYDTIVRMAQPFSMRYLLIDGQGNFGSVDGDAPAAMRYTEVRM 127 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 ++VA +L +D++ VDF Y+E + PVV PS+ PNLL NG+SGIAVGMAT+IP HN+ Sbjct: 128 SKVAHALLADLDKETVDFSPNYDETEFAPVVLPSRIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ A +AL+D P+ S+E L+E I GPDFPT II R I+E YR G+G +RAR Sbjct: 188 TEVINACIALVDEPDTSLEDLMEIIPGPDFPTAAII-NGRAGIIEGYRTGKGRVVIRART 246 Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315 +E + G I++ E+PYQV K+RLIE+IAEL+ K+I + +RDES + V+ Sbjct: 247 EIETDENSGRQSIIIQELPYQVNKARLIERIAELVRDKKIEGISGLRDESDKQGMRVVIE 306 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 R+ D+++ ++F + M+ F +NM L G+ P+ + L IL+ ++ HRREV+ RR Sbjct: 307 LKRNEVADVVLNNLFAHTQMQNVFGINMVALVDGQ-PRTLNLKQILEYFIKHRREVVTRR 365 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR------------ 420 + F ++ R +L+GL IA NIDE+IA+I+ P K ++S+ Sbjct: 366 TIFELKKARNRAHLLEGLGIALANIDEMIALIKQSPTPQDAKNALLSKIWQPGLVKAMLE 425 Query: 421 ----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458 + L+E Q AIL LRL L LE+ +I +E + LL Sbjct: 426 KAGSNASRPDDLTEEYGLHENGYKLSEAQAQAILELRLHRLTALEQDKIINEFEELLNLI 485 Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518 +++ +L S ++ I E+ E+K F RRT E++ + + + +I +E Sbjct: 486 KELLDILASPERLMQVIRDELIEIKSQFGDE-----RRT---EITASQEDLTIEDLITEE 537 Query: 519 PITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570 + V +S++G+++ + + SA H K+ D ++ + A T D +L S G Sbjct: 538 DVVVTLSHQGYVKYQPITAYQAQRRGGKGKSATHVKDEDFVERLVIASTHDTLLCFSNHG 597 Query: 571 -----KAYTLPAGNLLS-GR--------GHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLV 616 KAY LP + S GR GE I ++ + +D ++V+ +T K V Sbjct: 598 KLYWLKAYQLPQASRTSRGRPIINILPLAEGEEINAMLPVREYKD--GSYVFMATKKGTV 655 Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV-VKVT--GDHVAVVGENRKLLIF 673 NAF + + + V EE LV V +T + + + K++ F Sbjct: 656 KKVPLNAF---------SRPRSNGIIAVDLEEDDSLVGVDITDGARDIMLFTDAGKVIRF 706 Query: 674 SIDQIPEMSR-GKGVR-LQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLG 731 ++ M R +GVR ++ KD + ++ G T + + Y + + + Sbjct: 707 DESKVRPMGRTARGVRGIRVEKDQAVKSLVVVDPSGG-TILTATENGYGKRTHIDEYRVS 765 Query: 732 KRGGVGSLVPKGFPRSGKFLSS 753 RGG G + + R+GK + S Sbjct: 766 GRGGQGVISIQVTERNGKVVRS 787 >gi|168207730|ref|ZP_02633735.1| DNA gyrase, A subunit [Clostridium perfringens E str. JGS1987] gi|169343478|ref|ZP_02864478.1| DNA gyrase, A subunit [Clostridium perfringens C str. JGS1495] gi|169298430|gb|EDS80519.1| DNA gyrase, A subunit [Clostridium perfringens C str. JGS1495] gi|170660932|gb|EDT13615.1| DNA gyrase, A subunit [Clostridium perfringens E str. JGS1987] Length = 839 Score = 430 bits (1106), Expect = e-118, Method: Compositional matrix adjust. Identities = 275/773 (35%), Positives = 438/773 (56%), Gaps = 54/773 (6%) Query: 11 TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70 +L E V + + +++ Y+ YA+S I RA+PD+RDG KPVHRRI+++M E+GL Sbjct: 2 SLNEGKVIPIDINKEMKKCYIDYAMSVIVGRALPDVRDGLKPVHRRILYSMQELGLYPER 61 Query: 71 AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130 ++K ARIVGEV+GK HPHGD SVYD+LVR+AQ F RY L+ G GNFG++DGDSAAA R Sbjct: 62 GYRKCARIVGEVLGKYHPHGDSSVYDALVRMAQDFSLRYMLVDGHGNFGSVDGDSAAAMR 121 Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190 YTEA+M ++A +L+ ++++ VDF ++ E+ EPVV PS++PNLL NG+SGIAVGMAT+ Sbjct: 122 YTEAKMNKIASEMLRDINKNTVDFIPNFDGEEKEPVVLPSRYPNLLVNGSSGIAVGMATN 181 Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250 IP HN+ E+ + +ALIDNPE++ +L+ YI GPDFPT GII+ + I +Y G+G Sbjct: 182 IPPHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAGIIM-GKSGIRAAYETGKGRI 240 Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDV 309 VRA+ +EE G I+VTE+PYQV K++LIE IA+L+ K+I + D+RDES E + Sbjct: 241 VVRAKAEIEE-ENGRHKIIVTELPYQVNKAKLIEYIADLVKDKKITGISDLRDESDREGM 299 Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369 R+V+ K R +P++ + ++ + M+ F + M L + PQ++ L +L ++ ++ Sbjct: 300 RMVIELK-RDANPNVTLNLLYKHTKMQDTFGVIMLAL-VDNQPQILNLKQVLVHYINFQK 357 Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTEN 426 +V+ RR+ F + R IL+GL+IA NIDE+I IIR+ K ++ RFSL+E Sbjct: 358 DVITRRTQFELNKAKERAHILEGLIIALDNIDEVINIIRSSKTSEIAKNTLIERFSLSEK 417 Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486 Q AIL +RLR L LE +I++E + L+ + ++++L S ++ I E+ E+K + Sbjct: 418 QAAAILEMRLRRLTGLERDKIENEYNELMKLIDYLNAILASEERLLEVIKEELLEIKSKY 477 Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD------- 539 S RRT ++ + + + +I++E + + +++ G+I+ + S Sbjct: 478 SDE-----RRT---QIEKQENEIDIEDLIQEEDVVITLTHTGYIKRISSDVYSAQKRGGK 529 Query: 540 -LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEAIQLLIDL 596 + A+ KE D ++ L T +L +T GK Y + A + +GR G + ++ L Sbjct: 530 GIQAMTTKEDDFVENVLVTSTHSNLLFFTTKGKVYKIKAYEVPDAGRTAKGTNLVNILPL 589 Query: 597 NHNQDIVTAFVYDST---------CKLLVVSS---KGNAFIVEESEIIANTRKGKTFLKV 644 ++ I T + KL +V K I + I N R+G L+ Sbjct: 590 EADEKIQTVLSFKDVQEDGYLFMGTKLGIVKKTPLKDFKNIRKNGLIALNLREGDELLRA 649 Query: 645 SSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICF 703 ++ VT D A+ F+ + M R GV+ S ++G ++ +C Sbjct: 650 KITYGDADIIFVTQDGNAIR--------FNETDVRPMGRTASGVKAISLREGDVA--VCM 699 Query: 704 KIC---EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753 I E L + G Y + N + RGG+G + K ++GK + + Sbjct: 700 DIAVEDEKLLVVSENG--YGKRTNLDEYKVQNRGGIGLITYKVSDKTGKVVGA 750 >gi|260768285|ref|ZP_05877219.1| DNA gyrase subunit A [Vibrio furnissii CIP 102972] gi|260616315|gb|EEX41500.1| DNA gyrase subunit A [Vibrio furnissii CIP 102972] Length = 878 Score = 430 bits (1106), Expect = e-118, Method: Compositional matrix adjust. Identities = 274/729 (37%), Positives = 415/729 (56%), Gaps = 72/729 (9%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + V++ L YL YA+S I RA+PD+RDG KPVHRR++ AM+ +G D+ A+KKSA Sbjct: 8 ITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKKSA 67 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG+IDGDSAAA RYTE RM Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVRM 127 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 ++A +L +D++ VD+ Y+ + P V P+K PNLL NG SGIAVGMAT+IP HN+ Sbjct: 128 AKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGASGIAVGMATNIPPHNL 187 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ + LA IDN I+I++L++YI GPDFPT +I R+ IV++Y+ GRG +R++ Sbjct: 188 TEVIDGCLAFIDNESITIDELMDYIPGPDFPTAALI-SGRKGIVDAYKTGRGKIYMRSKA 246 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFP 315 +E G I+VTEIPYQV K+RLIEKIAEL+ K++ + +RDES +D +RIV+ Sbjct: 247 EIEADKHGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIEC 306 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 K R ++++ +++ + ++T F +NM L G+ P++ L +LK ++ HRREV+ RR Sbjct: 307 K-RDAVGEVVLNNLYANTQLQTTFGINMVALDNGQ-PKLFNLKEMLKCFVDHRREVVTRR 364 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR------------ 420 + F ++ R IL+GL +A NID+II +IR P K +V+R Sbjct: 365 TIFELRKARERAHILEGLALALANIDDIIDLIRKASTPAEAKAGLVARGWALGNVAAMLE 424 Query: 421 ----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458 + LTE Q AIL+LRL L LE +I E LL E Sbjct: 425 RAGTDAARPEWLELQYGIRDGQYFLTEQQAQAILDLRLHKLTGLEHEKILDEYKQLLEEI 484 Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518 ++ +L S ++ I E++ V++ + + RRT E++ A + +I +E Sbjct: 485 AELMHILASTERLMEVIREELQAVRDGYGDA-----RRT---EITAASHDIDLEELIARE 536 Query: 519 PITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570 + V +S+ G+++ + + SA K+ D ++ L A+T D IL ST G Sbjct: 537 DVVVTLSHEGYVKYQLLSDYEAQRRGGKGKSATRMKDEDYIERLLVANTHDNILCFSTRG 596 Query: 571 KAYTLPAGNL-LSGR-GHGEAIQLLIDLNHNQDI-----VTAFVYDSTCKLLVVSSKGNA 623 K Y + L L+ R G+ I L+ L N+ I VT F D + + G+ Sbjct: 597 KTYRMKVYQLPLASRTARGKPIVNLLPLEDNERITAILPVTEFSDDK----FIFMATGDG 652 Query: 624 FIVEES-EIIANTR-KGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPE 680 + + S + +N R G + + ++ + V GD + + ++ K++ F+ DQ+ Sbjct: 653 TVKKTSLDQFSNVRSNGLIAVNLRDDDSLIGVDITNGDSEIMLFSKSGKVVRFNEDQVRA 712 Query: 681 MSR-GKGVR 688 M R GVR Sbjct: 713 MGRTASGVR 721 >gi|54297327|ref|YP_123696.1| DNA gyrase, subunit A, type II topoisomerase [Legionella pneumophila str. Paris] gi|53751112|emb|CAH12523.1| DNA gyrase, subunit A, type II topoisomerase [Legionella pneumophila str. Paris] Length = 863 Score = 430 bits (1106), Expect = e-118, Method: Compositional matrix adjust. Identities = 285/802 (35%), Positives = 439/802 (54%), Gaps = 87/802 (10%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 V V++ L++ YL YA+S I RA+PD+RDG KPVHRR++ AMSE+G D+ +KKSA Sbjct: 8 VLPVNIEDELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELGNDWNKPYKKSA 67 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD +VYD++VR+AQPF RY LI GQGNFG++DGD+ AA RYTE RM Sbjct: 68 RVVGDVIGKYHPHGDTAVYDTIVRMAQPFSMRYLLIDGQGNFGSVDGDAPAAMRYTEVRM 127 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 ++VA +L +D++ VDF Y+E + PVV PS+ PNLL NG+SGIAVGMAT+IP HN+ Sbjct: 128 SKVAHALLADLDKETVDFSPNYDETEFAPVVLPSRIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ A +AL+D P+ S+E L+E I GPDFPT II R I+E YR G+G +RAR Sbjct: 188 TEVINACIALVDEPDTSLEDLMEIIPGPDFPTAAII-NGRAGIIEGYRTGKGRVVIRART 246 Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315 +E + G I++ E+PYQV K+RLIE+IAEL+ K++ + +RDES + V+ Sbjct: 247 EIETDESSGRQSIIIQELPYQVNKARLIERIAELVRDKKVEGISGLRDESDKQGMRVVIE 306 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 R+ D+++ ++F + M+ F +NM L G+ P+ + L IL+ ++ HRREV+ RR Sbjct: 307 LKRNEVADVVLNNLFAHTQMQNVFGINMVALVDGQ-PRTLNLKQILEYFIKHRREVVTRR 365 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR------------ 420 + F ++ R +L+GL IA NIDE+IA+I+ P K ++S+ Sbjct: 366 TIFELKKARSRAHLLEGLGIALANIDEMIALIKQSPTPQDAKSALLSKIWQPGLVKAMLE 425 Query: 421 ----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458 + L+E Q AIL LRL L LE+ +I +E + LL Sbjct: 426 KAGSNASRPDDLTEEYGLHENGYKLSEAQAQAILELRLHRLTALEQDKIINEFEELLNLI 485 Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518 +++ +L S ++ I E+ E+K F RRT E++ + + + +I +E Sbjct: 486 KELLDILASPERLMQVIRDELIEIKSQFGDE-----RRT---EITASQEDLTIEDLITEE 537 Query: 519 PITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570 + V +S++G+++ + + SA H K+ D ++ + A T D +L S G Sbjct: 538 DVVVTLSHQGYVKYQPITAYQAQRRGGKGKSATHVKDEDFVERLVIASTHDTLLCFSNHG 597 Query: 571 -----KAYTLPAGNLLS-GR--------GHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLV 616 KAY LP + S GR GE I ++ + +D ++V+ +T K V Sbjct: 598 KLYWLKAYQLPQASRASRGRPIINILPLAEGEEINAMLPVREYKD--GSYVFMATKKGTV 655 Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV-VKVTGD--HVAVVGENRKLLIF 673 NAF + + + V EE LV V +T + + + K++ F Sbjct: 656 KKVPLNAF---------SRPRSNGIIAVDLEEDDSLVGVDITDGTRDIMLFTDAGKVIRF 706 Query: 674 SIDQIPEMSR-GKGVR-LQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLG 731 +++ M R +GVR ++ KD + ++ G T + + Y + + + Sbjct: 707 DENKVRPMGRTARGVRGIRVEKDQAVKSLVVVD-PNGGTILTATENGYGKRTHIDEYRVS 765 Query: 732 KRGGVGSLVPKGFPRSGKFLSS 753 RGG G + + R+GK + S Sbjct: 766 GRGGQGVISIQVTERNGKVVRS 787 >gi|242310771|ref|ZP_04809926.1| DNA gyrase subunit A [Helicobacter pullorum MIT 98-5489] gi|239523169|gb|EEQ63035.1| DNA gyrase subunit A [Helicobacter pullorum MIT 98-5489] Length = 829 Score = 430 bits (1106), Expect = e-118, Method: Compositional matrix adjust. Identities = 249/614 (40%), Positives = 382/614 (62%), Gaps = 36/614 (5%) Query: 12 LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71 L+ ++++ V++ +++E YL Y++S I RA+PD RDG KPVHRRI++AM E+G+ A Sbjct: 4 LLNQDIQNVNIEDSIKESYLDYSMSVIVGRALPDARDGLKPVHRRILYAMYELGVTSKAK 63 Query: 72 FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131 +KKSARIVG+VIGK HPHGD +VYD+LVR+AQ F R L+ GQGNFG+IDGDSAAA RY Sbjct: 64 YKKSARIVGDVIGKYHPHGDIAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDSAAAMRY 123 Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191 TEA+MTQ AE +L+ +D+D VDF Y++ EP + PS+ PNLL NG++GIAVGMAT+I Sbjct: 124 TEAKMTQAAEEVLRDIDKDTVDFLPNYDDTLKEPDILPSRLPNLLINGSNGIAVGMATNI 183 Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251 P H V EI +A + LIDNP+ + ++L+++ GPDFPTGGII + I E+Y GRG + Sbjct: 184 PPHRVDEIIDALVYLIDNPKAELNEILQFVEGPDFPTGGIIY-GKNGIREAYETGRGRIK 242 Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVR 310 VRA+ +E+ + IV+ EIPYQV K+RL+E+IAEL K I + ++RDES E +R Sbjct: 243 VRAKTHIEKT-KTKDIIVIDEIPYQVNKARLVEQIAELAKEKVIEGISEVRDESDREGIR 301 Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370 +V+ K ++ ++++ +F + ME+ F + + + + P++ L +L +++HR+ Sbjct: 302 VVIELKREAM-SEIVLNHLFKSTPMESTFGIILLAI-YNKEPKIFTLLELLGLFISHRKS 359 Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQ 427 V+ RR+ F ++ R IL+GL IA NIDEI+++IR+ PK ++S+F+L+E Q Sbjct: 360 VVIRRTIFELEKAKARAHILEGLRIALENIDEIVSLIRSSSDPKVAKEGLISQFNLSEIQ 419 Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487 AIL++RL+ L LE +I++E LL E E ++S+L S I E+ EVKE FS Sbjct: 420 AQAILDMRLQRLTGLEREKIENEYQELLKEIEYLNSILRSEDLLNKIIKEELLEVKEKFS 479 Query: 488 KSTDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546 +R T E D ++ + +I E + V +S+RG+++ + + + Sbjct: 480 T------KRLTAIE---EDYESIDMEDLIPNEAVVVTMSHRGYVKRVPVRTYEKQ----N 526 Query: 547 EGDSLKIALHAH------------TTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQL 592 G KI+ + H T D I+ ++ G+ Y L + S G+A+ Sbjct: 527 RGGKGKISANTHDDDFIESFFVSDTHDTIMFITNKGQLYWLKVYKIPEASRTAIGKAVVN 586 Query: 593 LIDLNHNQDIVTAF 606 LI+L ++ I+ Sbjct: 587 LINLAPDEKIMATI 600 >gi|328474729|gb|EGF45534.1| DNA gyrase subunit A [Vibrio parahaemolyticus 10329] Length = 878 Score = 430 bits (1105), Expect = e-118, Method: Compositional matrix adjust. Identities = 272/725 (37%), Positives = 413/725 (56%), Gaps = 64/725 (8%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + V++ L YL YA+S I RA+PD+RDG KPVHRR++ AM+ +G D+ +KKSA Sbjct: 8 ITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSA 67 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG+IDGDSAAA RYTE RM Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVRM 127 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 ++A +L +D++ VD+ Y+ + P V P+K PNLL NG SGIAVGMAT+IP HN+ Sbjct: 128 AKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGASGIAVGMATNIPPHNL 187 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ + LA I+N EI+I++L++YI GPDFPT +I R+ IV++Y+ GRG +R++ Sbjct: 188 GEVIDGCLAYINNEEITIDELMDYIPGPDFPTAALI-SGRKGIVDAYKTGRGKIYMRSKA 246 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFP 315 +E G I+VTEIPYQV K+RLIEKIAEL+ K++ + +RDES +D +RIV+ Sbjct: 247 EIETEKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIEC 306 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 K R ++++ +++ + ++T F +NM L+ G+ PQ+ L +LK ++ HRREV+ RR Sbjct: 307 K-RDAVGEVVLNNLYAQTQLQTTFGINMVALNNGQ-PQLFNLKDMLKCFVDHRREVVTRR 364 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR------------ 420 + F ++ R IL+GL +A NIDEII +IR P K +++R Sbjct: 365 TIFELRKARERAHILEGLALALANIDEIIDLIRKAPTPAEAKAGLIARGWDLGNVAAMLE 424 Query: 421 ----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458 + LTE Q AIL+LRL L LE +I +E LL E Sbjct: 425 RAGTDAARPEWLEPQYGIRDGQYFLTEQQAQAILDLRLHKLTGLEHEKILAEYKELLEEI 484 Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518 ++ +L S ++ I E+ V++ F+ + RRT E++ A + +I +E Sbjct: 485 AELMHILASTERLMEVIREELEAVRDGFADA-----RRT---EITAASHDIDMEELIARE 536 Query: 519 PITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570 + V +S+ G+++ + + SA K+ D ++ L A+T D IL ST G Sbjct: 537 DVVVTLSHEGYVKYQILSDYEAQRRGGKGKSATRMKDEDYIERLLVANTHDNILCFSTRG 596 Query: 571 KAYTLPAGNL-LSGR-GHGEAIQLLIDLNHNQDIVTAFVYDS-TCKLLVVSSKGNAFIVE 627 K Y L L L+ R G+ I ++ L + I D + + + G+ + + Sbjct: 597 KTYRLKVYQLPLASRTARGKPIVNILPLEDGERITAILPVDEFSADKFIFMATGDGTVKK 656 Query: 628 ES-EIIANTR-KGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR- 683 S + AN R G + + ++ + V TG + + + K++ FS D++ M R Sbjct: 657 TSLDQFANVRSNGLIAVNLRDDDSLIGVDITTGSSDIMLFSKAGKVVRFSEDKVRAMGRT 716 Query: 684 GKGVR 688 GVR Sbjct: 717 AAGVR 721 >gi|307610121|emb|CBW99663.1| DNA gyrase, subunit A, type II topoisomerase [Legionella pneumophila 130b] Length = 863 Score = 430 bits (1105), Expect = e-118, Method: Compositional matrix adjust. Identities = 286/802 (35%), Positives = 438/802 (54%), Gaps = 87/802 (10%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 V V++ L++ YL YA+S I RA+PD+RDG KPVHRR++ AMSE+G D+ +KKSA Sbjct: 8 VLPVNIEDELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELGNDWNKPYKKSA 67 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD +VYD++VR+AQPF RY LI GQGNFG++DGD+ AA RYTE RM Sbjct: 68 RVVGDVIGKYHPHGDTAVYDTIVRMAQPFSMRYMLIDGQGNFGSVDGDAPAAMRYTEVRM 127 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 ++VA +L +D++ VDF Y+E + PVV PS+ PNLL NG+SGIAVGMAT+IP HN+ Sbjct: 128 SKVAHALLADLDKETVDFSPNYDETEFAPVVLPSRIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ A +AL+D P+ S+E L+E I GPDFPT II R I+E YR G+G +RAR Sbjct: 188 TEVINACIALVDEPDTSLEDLMEIIPGPDFPTAAII-NGRAGIIEGYRTGKGRVVIRART 246 Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315 +E + G I++ E+PYQV K+RLIE+IAEL+ K+I + +RDES + V+ Sbjct: 247 EIETDESSGRQSIIIQELPYQVNKARLIERIAELVRDKKIEGISGLRDESDKQGMRVVIE 306 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 R+ D+++ ++F + M+ F +NM L G+ P+ + L IL+ ++ HRREV+ RR Sbjct: 307 LKRNEVADVVLNNLFAHTQMQNVFGINMVALVDGQ-PRTLNLKQILEYFIKHRREVVTRR 365 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR------------ 420 + F ++ R +L+GL IA NIDE+IA+I+ P K ++S+ Sbjct: 366 TIFELKKARSRAHLLEGLGIALANIDEMIALIKQSPTPQDAKSALLSKIWQPGLVKAMLE 425 Query: 421 ----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458 + L+E Q AIL LRL L LE+ +I +E + LL Sbjct: 426 KAGSNASRPDDLTEEYGLHENGYKLSEAQAQAILELRLHRLTALEQDKIINEFEELLNLI 485 Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518 +++ +L S ++ I E+ E+K F RRT E++ + + + +I +E Sbjct: 486 KELLDILASPERLMQVIRDELIEIKSQFGDE-----RRT---EITASQEDLTIEDLITEE 537 Query: 519 PITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570 + V +S++G+++ + + SA H K+ D ++ + A T D +L S G Sbjct: 538 DVVVTLSHQGYVKYQPITAYQAQRRGGKGKSATHVKDEDFVERLVIASTHDTLLCFSNHG 597 Query: 571 -----KAYTLPAGNLLS-GR--------GHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLV 616 KAY LP + S GR GE I ++ + +D ++V+ +T K V Sbjct: 598 KLYWLKAYQLPQASRASRGRPIINILPLAEGEEINAMLPVREYKD--GSYVFMATKKGTV 655 Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV-VKVT--GDHVAVVGENRKLLIF 673 NAF + + + V EE LV V +T + + + K++ F Sbjct: 656 KKVPLNAF---------SRPRSNGIIAVDLEEDDSLVGVDITDGARDIMLFTDAGKVIRF 706 Query: 674 SIDQIPEMSR-GKGVR-LQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLG 731 ++ M R +GVR ++ KD + ++ G T + + Y + + + Sbjct: 707 DESKVRPMGRTARGVRGIRVEKDQAVKSLVVVDPSGG-TILTATENGYGKRTHIDEYRVS 765 Query: 732 KRGGVGSLVPKGFPRSGKFLSS 753 RGG G + + R+GK + S Sbjct: 766 GRGGQGVISIQVTERNGKVVRS 787 >gi|126652000|ref|ZP_01724192.1| DNA gyrase subunit A [Bacillus sp. B14905] gi|126591269|gb|EAZ85378.1| DNA gyrase subunit A [Bacillus sp. B14905] Length = 821 Score = 430 bits (1105), Expect = e-118, Method: Compositional matrix adjust. Identities = 271/751 (36%), Positives = 433/751 (57%), Gaps = 52/751 (6%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 VK +++ +E +L YA+S I RA+PD+RDG KPVHRRI++ M E+G +KKSA Sbjct: 9 VKGINITEEIETSFLDYAMSVIVSRALPDVRDGLKPVHRRILYGMQELGNTADKPYKKSA 68 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 RIVG+V+GK HPHGD S+YD++VR+AQ F RY L+ G GNFG++DGD AAA RYTE+RM Sbjct: 69 RIVGDVMGKYHPHGDSSIYDAMVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAMRYTESRM 128 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 +++A +L+ +++D +D+ D Y+ + EP+V PS++PNLL NG +GIAVGMAT+IP H++ Sbjct: 129 SKIAMEMLRDINKDTIDYTDNYDGSEKEPIVLPSRYPNLLVNGAAGIAVGMATNIPPHHL 188 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E +A +AL +NP I+ E+L+E I GPDFPTGG+I+ R I +Y GRG +RA+ Sbjct: 189 GETIDAVIALSENPAITTEELMEIIPGPDFPTGGLIL-GRSGIRRAYESGRGSIIIRAKV 247 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316 +E+ G I+V E+PYQV K++LIEKIAEL+ K+I + ++RDES V+ Sbjct: 248 EIEQKANGKETILVHELPYQVNKAKLIEKIAELVRDKKIDGITNLRDESDRRGMRVVIEV 307 Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376 + + ++++ +++ + M++ F +NM L G+ P+V+ L +L +L H++ ++ RR+ Sbjct: 308 RKDANANVVLNNLYKQTAMQSSFGINMLSLVNGQ-PKVLGLKEMLYHYLEHQKVIIRRRT 366 Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAILN 433 F ++ + R IL+GL IA +IDEIIAIIR ++ KP ++ RF+L+E Q AIL+ Sbjct: 367 EFDLRKAEDRAHILEGLRIALDHIDEIIAIIRGSRSGEEAKPQLMERFNLSERQAQAILD 426 Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493 +RL L LE +I++E L ++ ++L + + I EI E+K+ +S D+ Sbjct: 427 MRLVRLSGLEREKIEAEYQELQVLIAELKAILADEAKIVDIIRTEILELKDRYS---DIR 483 Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DLSALHF 545 R T + + + +I E V +++ G+I+ L +++ + + Sbjct: 484 RTEITSGGIEMIE----DEDLIPVENSVVTLTHNGYIKRLAANTYRSQKRGGRGVQGMGT 539 Query: 546 KEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGR-GHGEAIQLLIDLNHN 599 E D ++ ++ T D IL ++ G K Y +P GR G I L++++ Sbjct: 540 NEDDFVEHLMNTSTHDTILFFTSKGKVFRAKGYEIPE----YGRTAKGLPIVNLLNIDKG 595 Query: 600 QDIVTAFV----YDSTCKLLVVSSKGNAFIVEESEI--IANTRKGKTFLKVSSEEKMKLV 653 + VTA + +D + + G I + + + AN R + +S E L+ Sbjct: 596 EK-VTAMIRVGSFDEDAYFIFTTKTG---ITKRTPVSQFANIRT-NGLIAISLREDDDLI 650 Query: 654 -VKVT-GDHVAVVGENRKLLI-FSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEG- 708 V++T GD ++G +L+ F D I M R GVR +DG +V+ +I E Sbjct: 651 SVRLTDGDKQIIIGTRDGMLVRFQEDDIRSMGRTAGGVRGIKLRDG--DEVVGMEIVEPG 708 Query: 709 --LTWIDSAGRSYNRSENDLLGWLGKRGGVG 737 + + G SE+D L RGGVG Sbjct: 709 QEILVVTEKGYGKRTSEDDY--RLQSRGGVG 737 >gi|212218851|ref|YP_002305638.1| DNA gyrase subunit A [Coxiella burnetii CbuK_Q154] gi|215918987|ref|NP_819556.2| DNA gyrase subunit A [Coxiella burnetii RSA 493] gi|206583872|gb|AAO90070.2| DNA gyrase subunit A [Coxiella burnetii RSA 493] gi|212013113|gb|ACJ20493.1| DNA gyrase subunit A [Coxiella burnetii CbuK_Q154] Length = 850 Score = 430 bits (1105), Expect = e-118, Method: Compositional matrix adjust. Identities = 282/784 (35%), Positives = 431/784 (54%), Gaps = 71/784 (9%) Query: 26 LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85 L++ YL YA+S I RA+PD+RDG KPVHRR+++AMSE+G D+ KKSARIVG+VIGK Sbjct: 19 LKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSELGNDWNKPNKKSARIVGDVIGK 78 Query: 86 LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145 HPHGD +VYD++VR+AQPF RY LI GQGNFG++DGD+ AA RYTE R+++ A ++ Sbjct: 79 YHPHGDVAVYDTIVRMAQPFSLRYLLIDGQGNFGSVDGDAPAAMRYTEIRLSRFAHALMA 138 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 +D++ VDF Y+E + P V P++ PNLL NG SGIAVGMAT+IP HN+ EI A LA Sbjct: 139 DLDKETVDFAPNYDETEMAPAVLPTRVPNLLINGASGIAVGMATNIPPHNLNEIINATLA 198 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265 LI+NP++++E+L+ +I GPDFPT GII R IV++Y+ GRG VRA+ +E G Sbjct: 199 LIENPDLNVEELMRHIPGPDFPTAGII-NGRNGIVQAYKTGRGRIYVRAKTEIETTKSGR 257 Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325 IVV E+PYQV K+RL+EKI EL+ KRI + +RDES + ++ +R + +++ Sbjct: 258 SLIVVHELPYQVNKARLLEKIGELVREKRIEGISGLRDESDKRGMRMVIEVSRGDNAEIV 317 Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385 + +++ + ++T F +NM L G+ P+V+ L +L +L HRREV+ RR+ F ++ Sbjct: 318 LNNLYAQTQLQTVFGINMVALDNGQ-PRVLNLKQLLSAFLQHRREVVTRRTLFELRKARE 376 Query: 386 RVEILKGLLIAYLNIDEIIAIIRNEDKP------------KPVMVSRF------------ 421 R IL+GL +A NIDE+IA+I+ P KP V+ F Sbjct: 377 RAHILEGLGVALANIDEVIALIKKAKTPAIAKENLLAQAWKPGAVADFLKKAGSDRTRPD 436 Query: 422 -------------SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSG 468 L+ Q AIL+LRL L LE +I+ E ++ + E++ ++++ Sbjct: 437 DLAAEFGLRKEGYYLSPAQAQAILDLRLHRLTGLETDKIREEYIAIIDKIEELIAIVSDP 496 Query: 469 KQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATL-QQAMIEKEPITVVISNR 527 + I E+ VKE F RRT + D + L + +I +E V +S+ Sbjct: 497 DKLHEVIREELIAVKEQFGDE-----RRTVIID----DHSDLTHEDLIPEEHRVVTLSHE 547 Query: 528 GWIR--SLKSHSVDLS------ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN 579 G+I+ SL S+ A KE D +K L A++ D IL ST GK Y L Sbjct: 548 GYIKSQSLSSYQAQHRGGRGKLAAAVKEQDFVKNILVANSHDTILCFSTQGKVYWLKVYQ 607 Query: 580 LLSGR--GHGEAIQLLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIAN 634 + G G I L+ L ++ I YD + + + +++G V +E Sbjct: 608 VPQGSRIARGRPIINLLPLVKDEQISAILPIRAYDGSHFVFMATAQGAIKKVSLAEFSQP 667 Query: 635 TRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSRG----KGVRL 689 KGK L ++ +++ V G + +V + K + F ++ EM R +G++L Sbjct: 668 RTKGKIALALNEGDRLVGVDITDGKKEIMLVTDAGKAIRFHEKEVREMGRSARGVRGIKL 727 Query: 690 QSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGK 749 ++ ++ + +I K + G + +D RGG G + + R+GK Sbjct: 728 KAKQN--VIALIVVKPKGNILTATVHGYGQRTALDDYRST--GRGGQGVMAIRINSRNGK 783 Query: 750 FLSS 753 +S+ Sbjct: 784 VVSA 787 >gi|164685995|ref|ZP_01946409.2| DNA gyrase, A subunit [Coxiella burnetii 'MSU Goat Q177'] gi|165924109|ref|ZP_02219941.1| DNA gyrase, A subunit [Coxiella burnetii RSA 334] gi|164601521|gb|EAX32985.2| DNA gyrase, A subunit [Coxiella burnetii 'MSU Goat Q177'] gi|165916448|gb|EDR35052.1| DNA gyrase, A subunit [Coxiella burnetii RSA 334] Length = 848 Score = 430 bits (1105), Expect = e-118, Method: Compositional matrix adjust. Identities = 282/784 (35%), Positives = 431/784 (54%), Gaps = 71/784 (9%) Query: 26 LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85 L++ YL YA+S I RA+PD+RDG KPVHRR+++AMSE+G D+ KKSARIVG+VIGK Sbjct: 17 LKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSELGNDWNKPNKKSARIVGDVIGK 76 Query: 86 LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145 HPHGD +VYD++VR+AQPF RY LI GQGNFG++DGD+ AA RYTE R+++ A ++ Sbjct: 77 YHPHGDVAVYDTIVRMAQPFSLRYLLIDGQGNFGSVDGDAPAAMRYTEIRLSRFAHALMA 136 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 +D++ VDF Y+E + P V P++ PNLL NG SGIAVGMAT+IP HN+ EI A LA Sbjct: 137 DLDKETVDFAPNYDETEMAPAVLPTRVPNLLINGASGIAVGMATNIPPHNLNEIINATLA 196 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265 LI+NP++++E+L+ +I GPDFPT GII R IV++Y+ GRG VRA+ +E G Sbjct: 197 LIENPDLNVEELMRHIPGPDFPTAGII-NGRNGIVQAYKTGRGRIYVRAKTEIETTKSGR 255 Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325 IVV E+PYQV K+RL+EKI EL+ KRI + +RDES + ++ +R + +++ Sbjct: 256 SLIVVHELPYQVNKARLLEKIGELVREKRIEGISGLRDESDKRGMRMVIEVSRGDNAEIV 315 Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385 + +++ + ++T F +NM L G+ P+V+ L +L +L HRREV+ RR+ F ++ Sbjct: 316 LNNLYAQTQLQTVFGINMVALDNGQ-PRVLNLKQLLSAFLQHRREVVTRRTLFELRKARE 374 Query: 386 RVEILKGLLIAYLNIDEIIAIIRNEDKP------------KPVMVSRF------------ 421 R IL+GL +A NIDE+IA+I+ P KP V+ F Sbjct: 375 RAHILEGLGVALANIDEVIALIKKAKTPAIAKENLLAQAWKPGAVADFLKKAGSDRTRPD 434 Query: 422 -------------SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSG 468 L+ Q AIL+LRL L LE +I+ E ++ + E++ ++++ Sbjct: 435 DLAAEFGLRKEGYYLSPAQAQAILDLRLHRLTGLETDKIREEYIAIIDKIEELIAIVSDP 494 Query: 469 KQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATL-QQAMIEKEPITVVISNR 527 + I E+ VKE F RRT + D + L + +I +E V +S+ Sbjct: 495 DKLHEVIREELIAVKEQFGDE-----RRTVIID----DHSDLTHEDLIPEEHRVVTLSHE 545 Query: 528 GWIR--SLKSHSVDLS------ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN 579 G+I+ SL S+ A KE D +K L A++ D IL ST GK Y L Sbjct: 546 GYIKSQSLSSYQAQHRGGRGKLAAAVKEQDFVKNILVANSHDTILCFSTQGKVYWLKVYQ 605 Query: 580 LLSGR--GHGEAIQLLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIAN 634 + G G I L+ L ++ I YD + + + +++G V +E Sbjct: 606 VPQGSRIARGRPIINLLPLVKDEQISAILPIRAYDGSHFVFMATAQGAIKKVSLAEFSQP 665 Query: 635 TRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSRG----KGVRL 689 KGK L ++ +++ V G + +V + K + F ++ EM R +G++L Sbjct: 666 RTKGKIALALNEGDRLVGVDITDGKKEIMLVTDAGKAIRFHEKEVREMGRSARGVRGIKL 725 Query: 690 QSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGK 749 ++ ++ + +I K + G + +D RGG G + + R+GK Sbjct: 726 KAKQN--VIALIVVKPKGNILTATVHGYGQRTALDDYRST--GRGGQGVMAIRINSRNGK 781 Query: 750 FLSS 753 +S+ Sbjct: 782 VVSA 785 >gi|269102944|ref|ZP_06155641.1| DNA gyrase subunit A [Photobacterium damselae subsp. damselae CIP 102761] gi|268162842|gb|EEZ41338.1| DNA gyrase subunit A [Photobacterium damselae subsp. damselae CIP 102761] Length = 873 Score = 430 bits (1105), Expect = e-118, Method: Compositional matrix adjust. Identities = 257/638 (40%), Positives = 378/638 (59%), Gaps = 65/638 (10%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + V++ L+ YL YA+S I RA+PD+RDG KPVHRR++ AM+ +G D+ A+KKSA Sbjct: 8 ITPVNIEEELKGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKKSA 67 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG+IDGDSAAA RYTE RM Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVRM 127 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 +++A +L +++D VD+ Y+ + P V P+K PNLL NG+SGIAVGMAT+IP HN+ Sbjct: 128 SKIAHELLADLEKDTVDYVPNYDGTEHIPAVLPTKIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ + LA IDN EI+I++L+EYI GPDFPT +I R+ I+++Y+ GRG +R++ Sbjct: 188 GEVIDGCLAYIDNEEITIDQLMEYIPGPDFPTAAMI-SGRKGIIDAYKTGRGKIYMRSKA 246 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFP 315 +E G I+VTEIPYQV K+RLIEKIAEL+ K++ + +RDES +D +RIV+ Sbjct: 247 EIEADKNGRETIIVTEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDGMRIVIEC 306 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 K R ++++ +++ + ++T F +NM L G+ P++ L +LK ++ HRREV+ RR Sbjct: 307 K-RDAVGEVVLNNLYAQTQLQTTFGINMVALDNGQ-PKLFNLKEMLKCFVNHRREVVTRR 364 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR------------ 420 + F ++ R IL+GL +A NIDEII +IR P K +V+R Sbjct: 365 TIFELRKARDRAHILEGLALALANIDEIIELIRRAPTPAEAKAGLVARGWELGNVAAMLE 424 Query: 421 ----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458 + LTE Q AIL+LRL L LE +I E LL E Sbjct: 425 RAGTDAARPDWLAEEFGIRDNLYYLTEQQAQAILDLRLHKLTGLEHEKILDEYKTLLEEI 484 Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518 ++ +L+S ++ I E+ VKE F+ + RRT E++ A + +I +E Sbjct: 485 AELLHILSSAERLMEVIREELELVKEQFNDA-----RRT---EITAATHDIDLEDLINQE 536 Query: 519 PITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570 + V +S+ G+++ + + +A K+ D ++ L A+T D IL ST G Sbjct: 537 DVVVTLSHEGYVKYQVLTDYEAQRRGGKGKAATRMKDEDFIERLLVANTHDTILCFSTRG 596 Query: 571 -----KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIV 603 K Y LP L S G+ I ++ L N+ I Sbjct: 597 RMYWLKVYQLP---LASRTARGKPIVNILPLEENERIT 631 >gi|229550694|ref|ZP_04439419.1| DNA gyrase, A subunit [Enterococcus faecalis ATCC 29200] gi|229304127|gb|EEN70123.1| DNA gyrase, A subunit [Enterococcus faecalis ATCC 29200] Length = 833 Score = 430 bits (1105), Expect = e-118, Method: Compositional matrix adjust. Identities = 268/771 (34%), Positives = 444/771 (57%), Gaps = 57/771 (7%) Query: 13 VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72 ++EN++ V+L ++E ++ YA+S I RA+PD+RDG KPVHRRI++ M+E+G+ Sbjct: 5 IKENIQDVNLTSEMKESFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 64 Query: 73 KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132 KKSARIVG+V+GK HPHGD ++Y+S+VR+AQPF R L+ G GNFG++DGD AAA RYT Sbjct: 65 KKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRAMLVDGHGNFGSVDGDGAAAMRYT 124 Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192 EARM+++A +L+ ++++ VDF+ Y++ + EPVV P++FPNLL NGT+GIAVGMAT+IP Sbjct: 125 EARMSKIALEMLRDINKNTVDFQGNYDDSEQEPVVLPARFPNLLVNGTTGIAVGMATNIP 184 Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252 HN+ E+ +A L+DNP+++ +L+E + GPDFPTGG+++ + I +Y G+G V Sbjct: 185 PHNLSEVIDATSLLMDNPDVTTNELMEVLPGPDFPTGGLVM-GKSGIRRAYETGKGSITV 243 Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRI 311 RA+ + E+ G I+VTE+PY V K++LIE+I+EL KRI + D+RDES+ E +RI Sbjct: 244 RAKVELTEMPNGKERILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMRI 303 Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371 V+ + R + +++ +++ ++ ++T F NM + G VP+++ L IL+ ++ H++EV Sbjct: 304 VIDVR-RDVSASVVLNNLYKMTALQTSFGFNMLAIEKG-VPKILSLKRILENYVEHQKEV 361 Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQV 428 + RR+ F + R IL+GL IA +IDEIIAIIR ++D+ K ++ RF ++ Q Sbjct: 362 ITRRTIFDKNKAEARAHILEGLRIALDHIDEIIAIIRGSQSDDEAKATLIERFEFSDRQA 421 Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488 AIL++RLR L LE +I++E LL ++ +L ++ I E+ +V+ F Sbjct: 422 QAILDMRLRRLTGLERDKIENEYQELLKFIADLEDILARPERVIEIIKTELNDVRTKFGD 481 Query: 489 STDLGRRRTTFC--EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV-------- 538 + RRT EV + + +IE+E + + ++N G+I+ + + Sbjct: 482 A-----RRTELLVGEVL----SLEDEDLIEEEEVVITLTNNGYIKRMANSEFRAQRRGGR 532 Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY---------------TLPAGNLLSG 583 + + + D +K + T D +L + GK Y +P NLL G Sbjct: 533 GVQGMGVHDDDFVKNLVSCSTHDTLLFFTNTGKVYRAKGYEIPEYGRTAKGIPVINLL-G 591 Query: 584 RGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLK 643 E IQ +I + + +++ +T K V + AF S I +N G + Sbjct: 592 IDSAEKIQAIISVEGKAE-AGKYLFFTTLKGTVKRTSVTAF----SNIRSN---GLIAIS 643 Query: 644 VSSEEKMKLVVKVTGDHVAVVGENRKL-LIFSIDQIPEMSRG----KGVRLQSYKDGGIS 698 + ++++ VV G+ ++G + + F + + +M R +G+RL+ D + Sbjct: 644 LKEDDELVNVVTTNGNQKMIIGTHAGYSVTFDENTVRDMGRTASGVRGIRLRE-NDYVVG 702 Query: 699 DVICFKICEGLTWIDSA-GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG 748 I + E L ++ G+ SE + G GK ++ K P +G Sbjct: 703 AAILDENKEVLVITENGYGKRTKASEYPVKGRGGKGIKTANITEKNGPLAG 753 >gi|168218300|ref|ZP_02643925.1| DNA gyrase, A subunit [Clostridium perfringens NCTC 8239] gi|182379686|gb|EDT77165.1| DNA gyrase, A subunit [Clostridium perfringens NCTC 8239] Length = 839 Score = 430 bits (1105), Expect = e-118, Method: Compositional matrix adjust. Identities = 275/773 (35%), Positives = 438/773 (56%), Gaps = 54/773 (6%) Query: 11 TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70 +L E V + + +++ Y+ YA+S I RA+PD+RDG KPVHRRI+++M E+GL Sbjct: 2 SLNEGKVIPIDINKEMKKCYIDYAMSVIVGRALPDVRDGLKPVHRRILYSMQELGLYPER 61 Query: 71 AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130 ++K ARIVGEV+GK HPHGD SVYD+LVR+AQ F RY L+ G GNFG++DGDSAAA R Sbjct: 62 GYRKCARIVGEVLGKYHPHGDSSVYDALVRMAQDFSLRYMLVDGHGNFGSVDGDSAAAMR 121 Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190 YTEA+M ++A +L+ ++++ VDF ++ E+ EPVV PS++PNLL NG+SGIAVGMAT+ Sbjct: 122 YTEAKMNKIASEMLRDINKNTVDFIPNFDGEEKEPVVLPSRYPNLLVNGSSGIAVGMATN 181 Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250 IP HN+ E+ + +ALIDNPE++ +L+ YI GPDFPT GII+ + I +Y G+G Sbjct: 182 IPPHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAGIIM-GKSGIRAAYETGKGRI 240 Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDV 309 VRA+ +EE G I+VTE+PYQV K++LIE IA+L+ K+I + D+RDES E + Sbjct: 241 VVRAKAEIEE-ENGRHKIIVTELPYQVNKAKLIEYIADLVKDKKITGISDLRDESDREGM 299 Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369 R+V+ K R +P++ + ++ + M+ F + M L + PQ++ L +L ++ ++ Sbjct: 300 RMVIELK-RDANPNVTLNLLYKHTKMQDTFGVIMLAL-VDNQPQILNLKQVLVHYINFQK 357 Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTEN 426 +V+ RR+ F + R IL+GL+IA NIDE+I IIR+ K ++ RFSL+E Sbjct: 358 DVITRRTQFELNKAKERAHILEGLIIALDNIDEVINIIRSSKTSEIAKNTLIERFSLSEK 417 Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486 Q AIL +RLR L LE +I++E + L+ + ++++L S ++ I E+ E+K + Sbjct: 418 QAAAILEMRLRRLTGLERDKIENEYNELMKLIDYLNAILASEERLLEVIKEELLEIKAKY 477 Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD------- 539 S RRT ++ + + + +I++E + + +++ G+I+ + S Sbjct: 478 SDE-----RRT---QIEKQENEIDIEDLIQEEDVVITLTHTGYIKRISSDVYSAQKRGGK 529 Query: 540 -LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEAIQLLIDL 596 + A+ KE D ++ L T +L +T GK Y + A + +GR G + ++ L Sbjct: 530 GIQAMTTKEDDFVENVLVTSTHSNLLFFTTKGKVYKIKAYEVPDAGRTAKGTNLVNILPL 589 Query: 597 NHNQDIVTAFVYDST---------CKLLVVSS---KGNAFIVEESEIIANTRKGKTFLKV 644 ++ I T + KL +V K I + I N R+G L+ Sbjct: 590 EADEKIQTVLSFKDVQEDGYLFMGTKLGIVKKTPLKDFKNIRKNGLIALNLREGDELLRA 649 Query: 645 SSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICF 703 ++ VT D A+ F+ + M R GV+ S ++G ++ +C Sbjct: 650 KITYGDADIIFVTQDGNAIR--------FNETDVRPMGRTASGVKAISLREGDVA--VCM 699 Query: 704 KIC---EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753 I E L + G Y + N + RGG+G + K ++GK + + Sbjct: 700 DIAVEDEKLLVVSENG--YGKRTNLDEYKVQNRGGIGLITYKVSDKTGKVVGA 750 >gi|308049654|ref|YP_003913220.1| DNA gyrase subunit A [Ferrimonas balearica DSM 9799] gi|307631844|gb|ADN76146.1| DNA gyrase subunit A [Ferrimonas balearica DSM 9799] Length = 876 Score = 430 bits (1105), Expect = e-118, Method: Compositional matrix adjust. Identities = 274/731 (37%), Positives = 413/731 (56%), Gaps = 76/731 (10%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + +++ L+ YL YA+S I RA+PD+RDG KPVHRR++ AM+E+G D+ +KKSA Sbjct: 8 ITPINIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELGNDWNKPYKKSA 67 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG++DGDSAAA RYTE RM Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYTLVDGQGNFGSVDGDSAAAMRYTEVRM 127 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 ++A +L +D++ VD+ Y+ + P V P+K PNLL NG SGIAVGMAT+IP HN+ Sbjct: 128 DRIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKVPNLLVNGASGIAVGMATNIPPHNL 187 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ + L LIDN +I++L+E I GPDFPTGGII R+ I E+YR GRG VRA+ Sbjct: 188 TEVVDGCLHLIDNEHATIDELIEIIPGPDFPTGGII-NGRKGIFEAYRTGRGKIYVRAKT 246 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316 VE G I+V EIPYQV K+RLIEKIAEL+ K+I + +RDES +D ++ Sbjct: 247 EVETDKNGREAIIVNEIPYQVNKARLIEKIAELVKDKKIEGISGLRDESDKDGMRIVIEL 306 Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376 R P++++ +++ + M+T F +NM L+ G+ P++ L +L+ ++ HRREV+ RR+ Sbjct: 307 KRGEVPEVVLNNLYAQTQMQTVFGMNMVALANGQ-PKIFNLKEMLEAFIRHRREVVTRRT 365 Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN--------------------------- 409 + ++ R IL+GL IA NID II +IR Sbjct: 366 VYELRKARERAHILEGLAIALANIDPIIELIRQSPTPAEAREALLSQGWDLGNVAGMLEK 425 Query: 410 --EDKPKPVMVS--------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKE 459 +D +P ++ ++ LT Q AIL+LRL+ L LE I E +LL + Sbjct: 426 AGDDAARPEWLTPEYGIRDGKYYLTLEQAKAILDLRLQKLTGLEHEAILDEYKSLLEQIA 485 Query: 460 KIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEP 519 ++ +L S ++ I E+ VK T G R T E+S A + +I +E Sbjct: 486 ELLHILGSTERLMEVIREELEAVK------TQYGDERMT--EISAASADISMEDLITQED 537 Query: 520 ITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGK 571 + V +S++G+++ + + SA K+ D ++ L A+T D IL S+ GK Sbjct: 538 VVVTLSHQGYVKYQPLTDYEAQRRGGKGKSATKMKDEDFIERLLVANTHDTILCFSSIGK 597 Query: 572 AY-----TLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV----YDSTCKLLVVSSKGN 622 Y LP L S G I L+ L + I TA + Y + +L ++KG Sbjct: 598 VYWMRVFQLP---LASRTARGRPIVNLLPLGEGERI-TAILPVEEYSADKFILFATAKGT 653 Query: 623 AFIVEESEIIANTR---KGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQI 678 V+++ + A +R G + ++ ++++ V G++ V + + K++ F+ DQ+ Sbjct: 654 ---VKKTALNAYSRPLSSGIRAINLADDDELIGVNITEGNNEVMLFSDAGKVVRFNEDQV 710 Query: 679 PEMSR-GKGVR 688 M R GVR Sbjct: 711 RAMGRTATGVR 721 >gi|71898266|ref|ZP_00680440.1| DNA gyrase, subunit A [Xylella fastidiosa Ann-1] gi|71732005|gb|EAO34062.1| DNA gyrase, subunit A [Xylella fastidiosa Ann-1] Length = 893 Score = 430 bits (1105), Expect = e-118, Method: Compositional matrix adjust. Identities = 281/768 (36%), Positives = 411/768 (53%), Gaps = 82/768 (10%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 V+L + + YL YA+S I RA+PD RDG KPVHRR+++AM E+G ++ KSARI+ Sbjct: 11 VNLEDEMRKSYLDYAMSVIVGRALPDARDGMKPVHRRVLYAMHELGAHSDKSYFKSARII 70 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 GEV+GK HPHGDQSVYD+LVR+AQPF RY L+ GQGNFG++DGD AAA RYTE+RM+++ Sbjct: 71 GEVLGKYHPHGDQSVYDTLVRMAQPFSLRYLLVEGQGNFGSVDGDPAAAMRYTESRMSRI 130 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 + ++ +D++ VDF+ Y+E+++EP V P++FPNLL NG+SGIAVGMAT+IP HN+ E Sbjct: 131 SHDLIADIDKETVDFQPNYDEKETEPTVMPTRFPNLLVNGSSGIAVGMATNIPPHNLVES 190 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 A +ALIDNPE+ I+ L+EYI GPDFPT GII IV YR GRG R+RA+ +E Sbjct: 191 INACIALIDNPELDIDGLMEYIPGPDFPTAGII-NGTAGIVAGYRTGRGRVRMRAKADIE 249 Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319 G IVVTEIPYQV K+RLIEKIAEL+ KRI + ++RDES +D + R Sbjct: 250 VADNGREAIVVTEIPYQVNKARLIEKIAELVKEKRIDGISELRDESDKDGMRIYIEVKRG 309 Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379 ++++ +++ + ME+ F +NM L GR PQ++ L IL+ ++ HRREV+ RR+ F Sbjct: 310 ESAEVVLNNLYQQTHMESVFGINMVALVDGR-PQLLNLKQILQAFIRHRREVVTRRTIFE 368 Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAII-------------------------------- 407 ++ R +L+GL +A NIDE+I +I Sbjct: 369 LRKARARAHVLEGLTVALANIDEMIHLIKTSPSPQEAKERLLAKTWAPGLVGTLLSASGG 428 Query: 408 ---RNEDKPKPVMV--SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKID 462 R ED P+ V + + LTE QV IL +RL L LE+ ++ E LL + Sbjct: 429 EASRPEDLPQGVGLIGDSYQLTEVQVRQILEMRLHRLTGLEQDKLAEEYQQLLEIIVGLI 488 Query: 463 SLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITV 522 +L S I E+ +++E + G R T S D L +I E + V Sbjct: 489 RILESPDVLLQVIRDELLKIREEY------GDVRRTEIRHSEEDLDILD--LIAPEDVVV 540 Query: 523 VISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGK--- 571 +S+ G+ R+ K +A+ KE D + +T D +L ++ GK Sbjct: 541 TLSHAGYAKRQPVSAYRAQKRGGRGRAAVTTKEEDFIDHLWLVNTHDTLLTFTSTGKVFW 600 Query: 572 --AYTLP-AGNLLSGRG--------HGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSK 620 Y LP AG+ GR GE +Q ++ + Y + + + Sbjct: 601 LSVYQLPEAGSNARGRPIINWIPLEPGEKVQAVLPVRE---------YAENHYVFFATRQ 651 Query: 621 GNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIP 679 G SE +GK + + + + V G+ V + N K + FS + + Sbjct: 652 GTVKKTPLSEFAFRLARGKIAINLDQGDALIGVALTDGERDVLLFASNGKTVRFSENTVR 711 Query: 680 EMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDL 726 M R GVR +G +V+ I E T +D + +++D+ Sbjct: 712 SMGRTATGVRGIKLTEG--EEVVSLIIAEPATGVDMLEEAEETADDDI 757 >gi|256963988|ref|ZP_05568159.1| conserved hypothetical protein [Enterococcus faecalis HIP11704] gi|256954484|gb|EEU71116.1| conserved hypothetical protein [Enterococcus faecalis HIP11704] Length = 833 Score = 429 bits (1104), Expect = e-118, Method: Compositional matrix adjust. Identities = 268/771 (34%), Positives = 445/771 (57%), Gaps = 57/771 (7%) Query: 13 VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72 ++EN++ V+L ++E ++ YA+S I RA+PD+RDG KPVHRRI++ M+E+G+ Sbjct: 5 IKENIQDVNLTSEMKESFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 64 Query: 73 KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132 KKSARIVG+V+GK HPHGD+++Y+S+VR+AQPF R L+ G GNFG++DGD AAA RYT Sbjct: 65 KKSARIVGDVMGKYHPHGDRAIYESMVRMAQPFSYRAMLVDGHGNFGSVDGDGAAAMRYT 124 Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192 EARM+++A +L+ ++++ VDF+ Y++ + EPVV P++FPNLL NGT+GIAVGMAT+IP Sbjct: 125 EARMSKIALEMLRDINKNTVDFQGNYDDSEQEPVVLPARFPNLLVNGTTGIAVGMATNIP 184 Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252 HN+ E+ +A L+DNP+++ +L+E + GPDFPTGG+++ + I +Y G+G V Sbjct: 185 PHNLSEVIDATSLLMDNPDVTTNELMEVLPGPDFPTGGLVM-GKSGIRRAYETGKGSITV 243 Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRI 311 RA+ + E+ G I+VTE+PY V K++LIE+I+EL KRI + D+RDES+ E +RI Sbjct: 244 RAKVELTEMPNGKERILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMRI 303 Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371 V+ + R + +++ +++ ++ ++T F NM + G VP+++ L IL+ ++ H++EV Sbjct: 304 VIDVR-RDVSASVVLNNLYKMTALQTSFGFNMLAIEKG-VPKILSLKRILENYVEHQKEV 361 Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQV 428 + RR+ F + R IL+GL IA +IDEIIAIIR ++D+ K ++ RF ++ Q Sbjct: 362 ITRRTIFDKNKAEARAHILEGLRIALDHIDEIIAIIRGSQSDDEAKATLIERFEFSDRQA 421 Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488 AIL++RLR L LE +I++E LL ++ +L ++ I E+ +V+ F Sbjct: 422 QAILDMRLRRLTGLERDKIENEYQELLKFIADLEDILARPERVIEIIKTELNDVRTKFGD 481 Query: 489 STDLGRRRTTFC--EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV-------- 538 + RRT EV + + +IE+E + + ++N G+I+ + + Sbjct: 482 A-----RRTELLVGEVL----SLEDEDLIEEEEVVITLTNNGYIKRMANSEFRAQRRGGR 532 Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY---------------TLPAGNLLSG 583 + + + D +K + T D +L + GK Y +P NLL G Sbjct: 533 GVQGMGVHDDDFVKNLVSCSTHDTLLFFTNTGKVYRAKGYEIPEYGRTAKGIPVINLL-G 591 Query: 584 RGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLK 643 E IQ +I + + +++ +T K V + AF S I +N G + Sbjct: 592 IDSAEKIQAIISVEGKAE-AGKYLFFTTLKGTVKRTAVTAF----SNIRSN---GLIAIS 643 Query: 644 VSSEEKMKLVVKVTGDHVAVVGENRKL-LIFSIDQIPEMSRG----KGVRLQSYKDGGIS 698 + ++++ VV G+ ++G + + F + + +M R +G+RL+ D + Sbjct: 644 LKEDDELVNVVTTNGNQKMIIGTHAGYSVTFDENTVRDMGRTASGVRGIRLRE-NDYVVG 702 Query: 699 DVICFKICEGLTWIDSA-GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG 748 I + E L ++ G+ SE + G GK ++ K P +G Sbjct: 703 AAILDENKEVLVITENGYGKRTKASEYPVKGRGGKGIKTANITEKNGPLAG 753 >gi|288932437|ref|YP_003436497.1| DNA gyrase subunit alpha [Ferroglobus placidus DSM 10642] gi|288894685|gb|ADC66222.1| DNA gyrase, A subunit [Ferroglobus placidus DSM 10642] Length = 775 Score = 429 bits (1104), Expect = e-118, Method: Compositional matrix adjust. Identities = 269/771 (34%), Positives = 431/771 (55%), Gaps = 98/771 (12%) Query: 30 YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89 YL YA+S I RA+PD+RDG KPV RRI+++M EMGL ++KSARIVG+V+GK HPH Sbjct: 15 YLDYAMSVIVGRALPDVRDGLKPVQRRILYSMYEMGLFSNRNYRKSARIVGDVLGKYHPH 74 Query: 90 GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDE 149 GD +VY++LVR+AQ F RYPLI GQGNFG+IDGD AA RYTEAR+T++AE +L+ +D+ Sbjct: 75 GDAAVYEALVRMAQDFNMRYPLIDGQGNFGSIDGDEPAAMRYTEARLTKIAEEMLKDIDK 134 Query: 150 DAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDN 209 D VDF ++ EP V P+ FPNLLANG+SGIAVGMAT+IP HN++EIC+A + I N Sbjct: 135 DTVDFVPNFDNTLKEPSVLPAAFPNLLANGSSGIAVGMATNIPPHNLREICDAIVEYIRN 194 Query: 210 PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIV 269 P++++ +L++++ GPDFPTGGIIV E I+++Y GRG +R + E+ I+ Sbjct: 195 PDVTVRELMKHVKGPDFPTGGIIV-GVEGIIKAYETGRGRIILRGKVEFED-----NAII 248 Query: 270 VTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFPKNRSLDPDLLMES 328 + E+PY V+KS ++EKIA L+ ++ ++ +RDES E +R+V+ K+ +D +L+++ Sbjct: 249 IREVPYTVRKSLIVEKIANLVKEGKLEEVKAVRDESDREGIRVVVELKS-GVDKNLVLKK 307 Query: 329 IFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVE 388 +++ + ++ + + + L + P+++ L ++ E++ HRREV+ RR+++ ++ + R+ Sbjct: 308 LYLYTPLQITYSIMLLAL-VNTQPKILTLKDLIAEYVNHRREVVRRRTAYELEKAEERIH 366 Query: 389 ILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVDAILNLRLRSLRKLEEY 445 +L+G I N+DE I++IR+ P K +++RFSL+E Q DA+L +RL+ L + Sbjct: 367 VLEGFKIVISNLDEAISLIRSSKSPSEAKEKLINRFSLSEKQADAVLQMRLQKLTSM--- 423 Query: 446 QIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR----------- 494 E+D +L E E++D +I+E+K I S + Sbjct: 424 ----EIDGILKEYEELDK--------------KIKELKSILSSQEKMDEIIIKELEEIKK 465 Query: 495 -----RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSVDLS 541 RRT E + ++ T + I+ E ++I+ G+ + L + V S Sbjct: 466 NYGDDRRTKIVE--KYEEIT-EVDTIKDEENVLIITKDGYAKRLDESDFRVQRRGGVGTS 522 Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD 601 + ++GD + + DRILL + DGKA+++ A + G+ + L L + Sbjct: 523 GISLRDGDYAAYIVKVRSLDRILLFTKDGKAFSINAYEIPKQERSGKGVSLKRFLRIEDE 582 Query: 602 IVTAFVYDSTCKLLVVSSKGNAFIVEESEI-----IANTRKGKTFLKVSSEEKMKLVVKV 656 IV +V KG+ I+ ES IA K ++S E + V K+ Sbjct: 583 IVG----------IVPFGKGSVVILTESGYIKKVNIAEFENAKRSGILASPESVAFVKKL 632 Query: 657 TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQS-------YKDGGISDVICFKICEG 708 G V + EN +L+ F +++PE R +GV+ S + D G D+I Sbjct: 633 DGKEVIIATENGRLVRFKAEEVPEYKRNARGVKAVSLDGDKIAWMDVGSEDLI------- 685 Query: 709 LTWIDSAGRSYNRSENDLLGWLGKRG--------GVGSLVPKGFPRSGKFL 751 LT ++ ++E L G +G G LV F +S K + Sbjct: 686 LTLTENGYGKMTKTEEFRLTGRGAKGVTAHKVNEKTGKLVFAEFVKSDKLM 736 >gi|161830072|ref|YP_001596456.1| DNA gyrase, A subunit [Coxiella burnetii RSA 331] gi|161761939|gb|ABX77581.1| DNA gyrase, A subunit [Coxiella burnetii RSA 331] Length = 848 Score = 429 bits (1104), Expect = e-118, Method: Compositional matrix adjust. Identities = 282/784 (35%), Positives = 431/784 (54%), Gaps = 71/784 (9%) Query: 26 LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85 L++ YL YA+S I RA+PD+RDG KPVHRR+++AMSE+G D+ KKSARIVG+VIGK Sbjct: 17 LKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSELGNDWNKPNKKSARIVGDVIGK 76 Query: 86 LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145 HPHGD +VYD++VR+AQPF RY LI GQGNFG++DGD+ AA RYTE R+++ A ++ Sbjct: 77 YHPHGDVAVYDTIVRMAQPFSLRYLLIDGQGNFGSVDGDAPAAMRYTEIRLSRFAHALMA 136 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 +D++ VDF Y+E + P V P++ PNLL NG SGIAVGMAT+IP HN+ EI A LA Sbjct: 137 DLDKETVDFAPNYDETEMAPAVLPTRVPNLLINGASGIAVGMATNIPPHNLNEIINATLA 196 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265 LI+NP++++E+L+ +I GPDFPT GII R IV++Y+ GRG VRA+ +E G Sbjct: 197 LIENPDLNVEELMRHIPGPDFPTAGII-NGRNGIVQAYKTGRGRIYVRAKTEIETTKSGR 255 Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325 IVV E+PYQV K+RL+EKI EL+ KRI + +RDES + ++ +R + +++ Sbjct: 256 SLIVVHELPYQVNKARLLEKIGELVREKRIEGISGLRDESDKRGMRMVIEVSRGDNAEIV 315 Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385 + +++ + ++T F +NM L G+ P+V+ L +L +L HRREV+ RR+ F ++ Sbjct: 316 LNNLYAQTQLQTVFGINMVALDNGQ-PRVLNLKQLLSAFLQHRREVVTRRTLFELRKARE 374 Query: 386 RVEILKGLLIAYLNIDEIIAIIRNEDKP------------KPVMVSRF------------ 421 R IL+GL +A NIDE+IA+I+ P KP V+ F Sbjct: 375 RAHILEGLGVALANIDEVIALIKKAKTPAIAKENLLAQAWKPGAVADFLKKAGSDRTQPD 434 Query: 422 -------------SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSG 468 L+ Q AIL+LRL L LE +I+ E ++ + E++ ++++ Sbjct: 435 DLAAEFGLRKEGYYLSPAQAQAILDLRLHRLTGLETDKIREEYIAIIDKIEELIAIVSDP 494 Query: 469 KQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATL-QQAMIEKEPITVVISNR 527 + I E+ VKE F RRT + D + L + +I +E V +S+ Sbjct: 495 DKLHEVIREELIAVKEQFGDE-----RRTVIID----DHSDLTHEDLIPEEHRVVTLSHE 545 Query: 528 GWIR--SLKSHSVDLS------ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN 579 G+I+ SL S+ A KE D +K L A++ D IL ST GK Y L Sbjct: 546 GYIKSQSLSSYQAQHRGGRGKLAAAVKEQDFVKNILVANSHDTILCFSTQGKVYWLKVYQ 605 Query: 580 LLSGR--GHGEAIQLLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIAN 634 + G G I L+ L ++ I YD + + + +++G V +E Sbjct: 606 VPQGSRIARGRPIINLLPLVKDEQISAILPIRAYDGSHFVFMATAQGAIKKVSLAEFSQP 665 Query: 635 TRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSRG----KGVRL 689 KGK L ++ +++ V G + +V + K + F ++ EM R +G++L Sbjct: 666 RTKGKIALALNEGDRLVGVDITDGKKEIMLVTDAGKAIRFHEKEVREMGRSARGVRGIKL 725 Query: 690 QSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGK 749 ++ ++ + +I K + G + +D RGG G + + R+GK Sbjct: 726 KAKQN--VIALIVVKPKGNILTATVHGYGQRTALDDYRST--GRGGQGVMAIRINSRNGK 781 Query: 750 FLSS 753 +S+ Sbjct: 782 VVSA 785 >gi|227555690|ref|ZP_03985737.1| DNA gyrase, A subunit [Enterococcus faecalis HH22] gi|227175200|gb|EEI56172.1| DNA gyrase, A subunit [Enterococcus faecalis HH22] Length = 816 Score = 429 bits (1104), Expect = e-118, Method: Compositional matrix adjust. Identities = 268/771 (34%), Positives = 444/771 (57%), Gaps = 57/771 (7%) Query: 13 VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72 ++EN++ V+L ++E ++ YA+S I RA+PD+RDG KPVHRRI++ M+E+G+ Sbjct: 5 IKENIQDVNLTSEMKESFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 64 Query: 73 KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132 KKSARIVG+V+GK HPHGD ++Y+S+VR+AQPF R L+ G GNFG++DGD AAA RYT Sbjct: 65 KKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRAMLVDGHGNFGSVDGDGAAAMRYT 124 Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192 EARM+++A +L+ ++++ VDF+ Y++ + EPVV P++FPNLL NGT+GIAVGMAT+IP Sbjct: 125 EARMSKIALEMLRDINKNTVDFQGNYDDSEQEPVVLPARFPNLLVNGTTGIAVGMATNIP 184 Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252 HN+ E+ +A L+DNP+++ +L+E + GPDFPTGG+++ + I +Y G+G V Sbjct: 185 PHNLSEVIDATSLLMDNPDVTTNELMEVLPGPDFPTGGLVM-GKSGIRRAYETGKGSITV 243 Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRI 311 RA+ + E+ G I+VTE+PY V K++LIE+I+EL KRI + D+RDES+ E +RI Sbjct: 244 RAKVELTEMPNGKERILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMRI 303 Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371 V+ + R + +++ +++ ++ ++T F NM + G VP+++ L IL+ ++ H++EV Sbjct: 304 VIDVR-RDVSASVVLNNLYKMTALQTSFGFNMLAIEKG-VPKILSLKRILENYVEHQKEV 361 Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQV 428 + RR+ F + R IL+GL IA +IDEIIAIIR ++D+ K ++ RF ++ Q Sbjct: 362 ITRRTIFDKNKAEARAHILEGLRIALDHIDEIIAIIRGSQSDDEAKATLIERFEFSDRQA 421 Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488 AIL++RLR L LE +I++E LL ++ +L ++ I E+ +V+ F Sbjct: 422 QAILDMRLRRLTGLERDKIENEYQELLKFIADLEDILARPERVIEIIKTELNDVRTKFGD 481 Query: 489 STDLGRRRTTFC--EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV-------- 538 + RRT EV + + +IE+E + + ++N G+I+ + + Sbjct: 482 A-----RRTELLVGEVL----SLEDEDLIEEEEVVITLTNNGYIKRMANSEFRAQRRGGR 532 Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY---------------TLPAGNLLSG 583 + + + D +K + T D +L + GK Y +P NLL G Sbjct: 533 GVQGMGVHDDDFVKNLVSCSTHDTLLFFTNTGKVYRAKGYEIPEYGRTAKGIPVINLL-G 591 Query: 584 RGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLK 643 E IQ +I + + +++ +T K V + AF S I +N G + Sbjct: 592 IDSAEKIQAIISVEGKAE-AGKYLFFTTLKGTVKRTAVTAF----SNIRSN---GLIAIS 643 Query: 644 VSSEEKMKLVVKVTGDHVAVVGENRKL-LIFSIDQIPEMSRG----KGVRLQSYKDGGIS 698 + ++++ VV G+ ++G + + F + + +M R +G+RL+ D + Sbjct: 644 LKEDDELVNVVTTNGNQKMIIGTHAGYSVTFDENTVRDMGRTASGVRGIRLRE-NDYVVG 702 Query: 699 DVICFKICEGLTWIDSA-GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG 748 I + E L ++ G+ SE + G GK ++ K P +G Sbjct: 703 AAILDENKEVLVITENGYGKRTKASEYPVKGRGGKGIKTANITEKNGPLAG 753 >gi|28199802|ref|NP_780116.1| DNA gyrase subunit A [Xylella fastidiosa Temecula1] gi|182682554|ref|YP_001830714.1| DNA gyrase subunit A [Xylella fastidiosa M23] gi|28057923|gb|AAO29765.1| DNA gyrase subunit A [Xylella fastidiosa Temecula1] gi|182632664|gb|ACB93440.1| DNA gyrase, A subunit [Xylella fastidiosa M23] Length = 893 Score = 429 bits (1104), Expect = e-118, Method: Compositional matrix adjust. Identities = 281/768 (36%), Positives = 411/768 (53%), Gaps = 82/768 (10%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 V+L + + YL YA+S I RA+PD RDG KPVHRR+++AM E+G ++ KSARI+ Sbjct: 11 VNLEDEMRKSYLDYAMSVIVGRALPDARDGMKPVHRRVLYAMHELGAHSDKSYFKSARII 70 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 GEV+GK HPHGDQSVYD+LVR+AQPF RY L+ GQGNFG++DGD AAA RYTE+RM+++ Sbjct: 71 GEVLGKYHPHGDQSVYDTLVRMAQPFSLRYLLVEGQGNFGSVDGDPAAAMRYTESRMSRI 130 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 + ++ +D++ VDF+ Y+E+++EP V P++FPNLL NG+SGIAVGMAT+IP HN+ E Sbjct: 131 SHDLIADIDKETVDFQPNYDEKETEPTVMPTRFPNLLVNGSSGIAVGMATNIPPHNLVES 190 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 A +ALIDNPE+ I+ L+EYI GPDFPT GII IV YR GRG R+RA+ +E Sbjct: 191 INACIALIDNPELDIDGLMEYIPGPDFPTAGII-NGTAGIVAGYRTGRGRVRMRAKADIE 249 Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319 G IVVTEIPYQV K+RLIEKIAEL+ KRI + ++RDES +D + R Sbjct: 250 VADNGREAIVVTEIPYQVNKARLIEKIAELVKEKRIDGISELRDESDKDGMRIYIEVKRG 309 Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379 ++++ +++ + ME+ F +NM L GR PQ++ L IL+ ++ HRREV+ RR+ F Sbjct: 310 ESAEVVLNNLYQQTQMESVFGINMVALVDGR-PQLLNLKQILQAFIRHRREVVTRRTIFE 368 Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAII-------------------------------- 407 ++ R +L+GL +A NIDE+I +I Sbjct: 369 LRKARARAHVLEGLTVALANIDEMIHLIKTSPSPQEAKERLLAKTWAPGLVGTLLSASGG 428 Query: 408 ---RNEDKPKPVMV--SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKID 462 R ED P+ V + + LTE QV IL +RL L LE+ ++ E LL + Sbjct: 429 EASRPEDLPQGVGLIGDSYQLTEVQVRQILEMRLHRLTGLEQDKLAEEYQQLLEIIVGLI 488 Query: 463 SLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITV 522 +L S I E+ +++E + G R T S D L +I E + V Sbjct: 489 RILESPDVLLQVIRDELLKIREEY------GDVRRTEIRHSEEDLDILD--LIAPEDVVV 540 Query: 523 VISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGK--- 571 +S+ G+ R+ K +A+ KE D + +T D +L ++ GK Sbjct: 541 TLSHAGYAKRQPVSAYRAQKRGGRGRAAVTTKEEDFIDHLWLVNTHDTLLTFTSTGKVFW 600 Query: 572 --AYTLP-AGNLLSGRG--------HGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSK 620 Y LP AG+ GR GE +Q ++ + Y + + + Sbjct: 601 LSVYQLPEAGSNARGRPIINWIPLEPGEKVQAVLPVRE---------YAENHYVFFATRQ 651 Query: 621 GNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIP 679 G SE +GK + + + + V G+ V + N K + FS + + Sbjct: 652 GTVKKTPLSEFAFRLARGKIAINLDQGDALIGVALTDGERDVLLFASNGKTVRFSENTVR 711 Query: 680 EMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDL 726 M R GVR +G +V+ I E T +D + +++D+ Sbjct: 712 SMGRTATGVRGIKLTEG--EEVVSLIIAEPATGVDMLEEAEETADDDI 757 >gi|332306880|ref|YP_004434731.1| DNA gyrase, A subunit [Glaciecola agarilytica 4H-3-7+YE-5] gi|332174209|gb|AEE23463.1| DNA gyrase, A subunit [Glaciecola agarilytica 4H-3-7+YE-5] Length = 897 Score = 429 bits (1104), Expect = e-118, Method: Compositional matrix adjust. Identities = 261/635 (41%), Positives = 366/635 (57%), Gaps = 65/635 (10%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 +++ L+ YL YA+S I RA+PD+RDG KPVHRR++ AM+E+ DF +KKSAR+V Sbjct: 11 INIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELKNDFNKPYKKSARVV 70 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG++DGDSAAA RYTE RM ++ Sbjct: 71 GDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRMAKI 130 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 + +L ++++ VDF Y+ + P V P+K PNLL NG+SGIAVGMAT+IP HN+ E+ Sbjct: 131 SHELLADLEKETVDFVPNYDGTEFIPDVLPTKVPNLLINGSSGIAVGMATNIPPHNLTEV 190 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 +ALID PE+SIE+L+EYI GPDFPT I R+ I E+YR GRG +RAR +E Sbjct: 191 VNGCIALIDKPELSIEELMEYIPGPDFPTAAFI-SGRKGIEEAYRTGRGKIYMRARAEIE 249 Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKNR 318 G I+V EIPYQV K+RLIEKIAEL+ K+I + +RDES +D +RIV+ K R Sbjct: 250 REDNGKETIIVHEIPYQVNKARLIEKIAELVKEKKIEGISALRDESDKDGMRIVVEVK-R 308 Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378 + ++L+ ++ + M+T F +NM L + P+V L ILK ++ HRREV+ RR+ F Sbjct: 309 NESGEVLLNHLYSQTQMQTVFGINMVALDKTQ-PKVFNLLDILKAFVLHRREVVTRRTVF 367 Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS------------------- 419 ++ R IL+GL IA NID IIA+I+ P +S Sbjct: 368 ELKKARERAHILEGLAIALANIDPIIALIKASKSPSDAKISLTAQGWQLGDVSEMLERAG 427 Query: 420 ------------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKI 461 + LTE Q AIL+LRL L LE +I SE LL ++ Sbjct: 428 NDAARPDWLEPEFGIRDGLYYLTEQQAQAILDLRLNKLTGLEHEKILSEYKELLDLIAEL 487 Query: 462 DSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPIT 521 +L S ++ I E+ ++++ F RRT E++ A + +IE+E + Sbjct: 488 LHILGSPERLMEVIREELEKIRDEFGDE-----RRT---EITAASHDIDIEDLIEREEVV 539 Query: 522 VVISNRGWIRSLKSHSVD--------LSALHFKEGDSLKIALHAHTTDRILLLSTDG--- 570 V +S G+++ K + + SA KE D ++ L A+T D IL ST G Sbjct: 540 VTLSREGYVKYQKLNDYESQRRGGKGKSATKMKEEDFIEKLLVANTHDHILCFSTRGRLY 599 Query: 571 --KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIV 603 K Y LP L S G I ++ L N+ I Sbjct: 600 WLKVYQLP---LASRNARGRPIVNILPLEENERIT 631 >gi|319651105|ref|ZP_08005239.1| DNA gyrase subunit A [Bacillus sp. 2_A_57_CT2] gi|317397275|gb|EFV77979.1| DNA gyrase subunit A [Bacillus sp. 2_A_57_CT2] Length = 841 Score = 429 bits (1104), Expect = e-118, Method: Compositional matrix adjust. Identities = 225/568 (39%), Positives = 363/568 (63%), Gaps = 20/568 (3%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 VK +++ + +L YA+S I RA+PD+RDG KPVHRRI++AM ++G+ FKKSA Sbjct: 9 VKEINISQEMRSSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMHDLGMHSDKPFKKSA 68 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 RIVGEVIGK HPHGD +VYD++VR+AQ F RY L+ G GNFG++DGD+AAA RYTEARM Sbjct: 69 RIVGEVIGKYHPHGDSAVYDTMVRMAQDFNYRYMLVDGHGNFGSVDGDAAAAMRYTEARM 128 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 ++++ +L+ +++D +D++D Y+ + EPVV P++FPNLL NGTSGIAVGMAT+IP H + Sbjct: 129 SKISMELLRDINKDTIDYQDNYDGAEKEPVVMPARFPNLLVNGTSGIAVGMATNIPPHQL 188 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ + LA+ P++++++L+E I GPDFPT G+I+ R I ++Y GRG +RA+ Sbjct: 189 GEVIDGVLAISQEPDLTVQELMEIIPGPDFPTAGLIL-GRSGIRKAYETGRGSITLRAKV 247 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316 +E+ G I+V EIPYQV K++LIEKIAEL+ KRI + D+RDES + ++ Sbjct: 248 EIEQKSNGKEVIIVNEIPYQVNKAKLIEKIAELVRDKRIDGITDLRDESDRNGMRIVIEV 307 Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376 + + ++L+ +++ + ++T F +N+ L G+ P+V+ L L+ +L H++ V+ RR+ Sbjct: 308 RKDANANVLLNNLYKQTALQTSFGINLLALVDGQ-PKVLNLKQCLQHYLDHQKVVIRRRT 366 Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAILN 433 F ++ + R IL+GL IA ++DE+I +IR+ D + ++++F+L+E Q AIL+ Sbjct: 367 EFELKKAEARAHILEGLRIALDHLDEVINLIRSSQTTDIAREGLMTKFNLSEKQAQAILD 426 Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493 +RL+ L LE +I+ E +L+A ++ ++L ++ I E+ EVKE F+ Sbjct: 427 MRLQRLTGLEREKIEDEYSSLVALIAELKAILADEEKVLEIIREELTEVKERFND----- 481 Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSVDLSALHF 545 +RRT V+ + + +I +E I + ++++G+I+ L K + + Sbjct: 482 KRRTEI--VAGGIEQIEDEDLIPRENIVLTLTHKGYIKRLPVSTYRAQKRGGRGIQGMGT 539 Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAY 573 E D ++ + T D IL + GK Y Sbjct: 540 NEDDFVEHLITTSTHDTILFFTNKGKVY 567 >gi|229515631|ref|ZP_04405090.1| DNA gyrase subunit A [Vibrio cholerae TMA 21] gi|229347400|gb|EEO12360.1| DNA gyrase subunit A [Vibrio cholerae TMA 21] Length = 894 Score = 429 bits (1104), Expect = e-118, Method: Compositional matrix adjust. Identities = 258/646 (39%), Positives = 379/646 (58%), Gaps = 64/646 (9%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + V++ L YL YA+S I RA+PD+RDG KPVHRR++ AM+ +G D+ A+KKSA Sbjct: 8 ITPVNIEDELRSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKKSA 67 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG+IDGDSAAA RYTE RM Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVRM 127 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 +++A +L +D++ VD+ Y+ + P V P+K PNLL NG+SGIAVGMAT+IP HN+ Sbjct: 128 SKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGSSGIAVGMATNIPPHNL 187 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ + LA IDN I+I++L++YI GPDFPT +I R+ I+++Y+ GRG +R++ Sbjct: 188 GEVIDGCLAYIDNESITIDELMDYIPGPDFPTAALI-SGRKGIIDAYKTGRGKVYMRSKA 246 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFP 315 +E G I+V+EIPYQV K+RLIEKIAEL+ K++ + +RDES +D +RIV+ Sbjct: 247 EIETDKNGKETIIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDGMRIVIEC 306 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 K R ++++ +++ + ++T F +NM L G+ P++ L +LK ++ HRREV+ RR Sbjct: 307 K-RDAVGEVVLNNLYANTQLQTTFGINMVALDNGQ-PKLFNLKEMLKCFVDHRREVVTRR 364 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR------------ 420 + F ++ R IL+GL +A NIDEII +IR P K +++R Sbjct: 365 TIFELRKARERAHILEGLALALANIDEIIELIRRASTPAEAKEGLIARGWDLGNVAAMLE 424 Query: 421 ----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458 + LTE Q AIL+LRL L LE +I E LL E Sbjct: 425 RAGTDAARPEWLEPQYGIRDGKYFLTEQQAQAILDLRLHKLTGLEHEKILDEYKQLLEEI 484 Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518 + +L S ++ I E+ ++ FS + RRT E++ A + +I +E Sbjct: 485 AALMHILASTERLMEVIREELEAIRAGFSDA-----RRT---EITAATHDIDMEELIARE 536 Query: 519 PITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570 + V +S+ G+++ + + SA KE D ++ L A+T D ILL ST G Sbjct: 537 DVVVTLSHEGYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFSTRG 596 Query: 571 KAYTLPAGNL-LSGR-GHGEAIQLLIDLNHNQDI-----VTAFVYD 609 K Y + L L+ R G+ I L+ L N+ I VT F D Sbjct: 597 KTYRMKVYQLPLASRTARGKPIVNLLPLEENERITAILPVTEFSED 642 >gi|258620208|ref|ZP_05715247.1| DNA gyrase, subunit A [Vibrio mimicus VM573] gi|262171718|ref|ZP_06039396.1| DNA gyrase subunit A [Vibrio mimicus MB-451] gi|258587566|gb|EEW12276.1| DNA gyrase, subunit A [Vibrio mimicus VM573] gi|261892794|gb|EEY38780.1| DNA gyrase subunit A [Vibrio mimicus MB-451] Length = 893 Score = 429 bits (1104), Expect = e-118, Method: Compositional matrix adjust. Identities = 258/646 (39%), Positives = 380/646 (58%), Gaps = 64/646 (9%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + V++ L YL YA+S I RA+PD+RDG KPVHRR++ AM+ +G D+ A+KKSA Sbjct: 8 ITPVNIEDELRSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKKSA 67 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG+IDGDSAAA RYTE RM Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVRM 127 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 +++A +L +D++ VD+ Y+ + P V P+K PNLL NG+SGIAVGMAT+IP HN+ Sbjct: 128 SKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGSSGIAVGMATNIPPHNL 187 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ + LA IDN I+I++L++YI GPDFPT +I R+ I+++Y+ GRG +R++ Sbjct: 188 GEVIDGCLAYIDNEAITIDELMDYIPGPDFPTAALI-SGRKGIIDAYKTGRGKVYMRSKA 246 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFP 315 +E G I+V+EIPYQV K+RLIEKIAEL+ K++ + +RDES +D +RIV+ Sbjct: 247 EIETDKNGKETIIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDGMRIVIEC 306 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 K R ++++ +++ + ++T F +NM L G+ P++ L +LK ++ HRREV+ RR Sbjct: 307 K-RDAVGEVVLNNLYANTQLQTTFGINMVALDNGQ-PKLFNLKEMLKCFVDHRREVVTRR 364 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR------------ 420 + F ++ R IL+GL +A NIDEII +IR+ P K +++R Sbjct: 365 TIFELRKARERAHILEGLALALANIDEIIELIRHAATPAEAKEGLIARGWDLGNVAAMLE 424 Query: 421 ----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458 + LTE Q AIL+LRL L LE +I E LL E Sbjct: 425 RAGTDAARPEWLEPQYGIRDGKYFLTEQQAQAILDLRLHKLTGLEHEKILDEYKQLLEEI 484 Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518 + +L S ++ I E+ ++ FS + RRT E++ A + +I +E Sbjct: 485 AALMHILASTERLMEVIREELEAIRAGFSDA-----RRT---EITAATHDIDMEELIARE 536 Query: 519 PITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570 + V +S+ G+++ + + SA KE D ++ L A+T D ILL ST G Sbjct: 537 DVVVTLSHEGYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFSTRG 596 Query: 571 KAYTLPAGNL-LSGR-GHGEAIQLLIDLNHNQDI-----VTAFVYD 609 K Y + L L+ R G+ I L+ L N+ I VT F D Sbjct: 597 KTYRMKVYQLPLASRTARGKPIVNLLPLEENERITAILPVTEFSED 642 >gi|261211022|ref|ZP_05925312.1| DNA gyrase subunit A [Vibrio sp. RC341] gi|260839997|gb|EEX66597.1| DNA gyrase subunit A [Vibrio sp. RC341] Length = 880 Score = 429 bits (1104), Expect = e-118, Method: Compositional matrix adjust. Identities = 258/646 (39%), Positives = 380/646 (58%), Gaps = 64/646 (9%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + V++ L YL YA+S I RA+PD+RDG KPVHRR++ AM+ +G D+ A+KKSA Sbjct: 8 ITPVNIEDELRSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKKSA 67 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG+IDGDSAAA RYTE RM Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVRM 127 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 +++A +L +D++ VD+ Y+ + P V P+K PNLL NG+SGIAVGMAT+IP HN+ Sbjct: 128 SKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGSSGIAVGMATNIPPHNL 187 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ + LA IDN I+I++L++YI GPDFPT +I R+ I+++Y+ GRG +R++ Sbjct: 188 GEVIDGCLAYIDNEAITIDELMDYIPGPDFPTAALI-SGRKGIIDAYKTGRGKVYMRSKA 246 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFP 315 +E G I+V+EIPYQV K+RLIEKIAEL+ K++ + +RDES +D +RIV+ Sbjct: 247 EIEADKNGKETIIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDGMRIVIEC 306 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 K R ++++ +++ + ++T F +NM L G+ P++ L +LK ++ HRREV+ RR Sbjct: 307 K-RDAVGEVVLNNLYANTQLQTTFGINMVALDNGQ-PKLFNLKEMLKCFVDHRREVVTRR 364 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR------------ 420 + F ++ R IL+GL +A NIDEII +IR+ P K +++R Sbjct: 365 TIFELRKARERAHILEGLALALANIDEIIELIRHAATPAEAKEGLIARGWDLGNVAAMLE 424 Query: 421 ----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458 + LTE Q AIL+LRL L LE +I E LL E Sbjct: 425 RAGTDAARPEWLEPQYGIRDGKYFLTEQQAQAILDLRLHKLTGLEHEKILDEYKQLLEEI 484 Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518 + +L S ++ I E+ ++ FS + RRT E++ A + +I +E Sbjct: 485 AALMHILASTERLMEVIREELEAIRAGFSDA-----RRT---EITAATHDIDMEELIARE 536 Query: 519 PITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570 + V +S+ G+++ + + SA KE D ++ L A+T D ILL ST G Sbjct: 537 DVVVTLSHEGYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFSTRG 596 Query: 571 KAYTLPAGNL-LSGR-GHGEAIQLLIDLNHNQDI-----VTAFVYD 609 K Y + L L+ R G+ I L+ L N+ I VT F D Sbjct: 597 KTYRMKVYQLPLASRTARGKPIVNLLPLEENERITAILPVTEFSED 642 >gi|257088491|ref|ZP_05582852.1| DNA gyrase A subunit gyrA [Enterococcus faecalis CH188] gi|312903112|ref|ZP_07762293.1| DNA gyrase, A subunit [Enterococcus faecalis TX0635] gi|256997303|gb|EEU83823.1| DNA gyrase A subunit gyrA [Enterococcus faecalis CH188] gi|310633503|gb|EFQ16786.1| DNA gyrase, A subunit [Enterococcus faecalis TX0635] gi|315578844|gb|EFU91035.1| DNA gyrase, A subunit [Enterococcus faecalis TX0630] gi|327533859|gb|AEA92693.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Enterococcus faecalis OG1RF] Length = 833 Score = 429 bits (1104), Expect = e-118, Method: Compositional matrix adjust. Identities = 268/771 (34%), Positives = 444/771 (57%), Gaps = 57/771 (7%) Query: 13 VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72 ++EN++ V+L ++E ++ YA+S I RA+PD+RDG KPVHRRI++ M+E+G+ Sbjct: 5 IKENIQDVNLTSEMKESFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 64 Query: 73 KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132 KKSARIVG+V+GK HPHGD ++Y+S+VR+AQPF R L+ G GNFG++DGD AAA RYT Sbjct: 65 KKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRAMLVDGHGNFGSVDGDGAAAMRYT 124 Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192 EARM+++A +L+ ++++ VDF+ Y++ + EPVV P++FPNLL NGT+GIAVGMAT+IP Sbjct: 125 EARMSKIALEMLRDINKNTVDFQGNYDDSEQEPVVLPARFPNLLVNGTTGIAVGMATNIP 184 Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252 HN+ E+ +A L+DNP+++ +L+E + GPDFPTGG+++ + I +Y G+G V Sbjct: 185 PHNLSEVIDATSLLMDNPDVTTNELMEVLPGPDFPTGGLVM-GKSGIRRAYETGKGSITV 243 Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRI 311 RA+ + E+ G I+VTE+PY V K++LIE+I+EL KRI + D+RDES+ E +RI Sbjct: 244 RAKVELTEMPNGKERILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMRI 303 Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371 V+ + R + +++ +++ ++ ++T F NM + G VP+++ L IL+ ++ H++EV Sbjct: 304 VIDVR-RDVSASVVLNNLYKMTALQTSFGFNMLAIEKG-VPKILSLKRILENYVEHQKEV 361 Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQV 428 + RR+ F + R IL+GL IA +IDEIIAIIR ++D+ K ++ RF ++ Q Sbjct: 362 ITRRTIFDKNKAEARAHILEGLRIALDHIDEIIAIIRGSQSDDEAKATLIERFEFSDRQA 421 Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488 AIL++RLR L LE +I++E LL ++ +L ++ I E+ +V+ F Sbjct: 422 QAILDMRLRRLTGLERDKIENEYQELLKFIADLEDILARPERVIEIIKTELNDVRTKFGD 481 Query: 489 STDLGRRRTTFC--EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV-------- 538 + RRT EV + + +IE+E + + ++N G+I+ + + Sbjct: 482 A-----RRTELLVGEVL----SLEDEDLIEEEEVVITLTNNGYIKRMANSEFRAQRRGGR 532 Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY---------------TLPAGNLLSG 583 + + + D +K + T D +L + GK Y +P NLL G Sbjct: 533 GVQGMGVHDDDFVKNLVSCSTHDTLLFFTNTGKVYRAKGYEIPEYGRTAKGIPVINLL-G 591 Query: 584 RGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLK 643 E IQ +I + + +++ +T K V + AF S I +N G + Sbjct: 592 IDSAEKIQAIISVEGKAE-AGKYLFFTTLKGTVKRTAVTAF----SNIRSN---GLIAIS 643 Query: 644 VSSEEKMKLVVKVTGDHVAVVGENRKL-LIFSIDQIPEMSRG----KGVRLQSYKDGGIS 698 + ++++ VV G+ ++G + + F + + +M R +G+RL+ D + Sbjct: 644 LKEDDELVNVVTTNGNQKMIIGTHAGYSVTFDENTVRDMGRTASGVRGIRLRE-NDYVVG 702 Query: 699 DVICFKICEGLTWIDSA-GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG 748 I + E L ++ G+ SE + G GK ++ K P +G Sbjct: 703 AAILDENKEVLVITENGYGKRTKASEYPVKGRGGKGIKTANITEKNGPLAG 753 >gi|18308989|ref|NP_560923.1| DNA gyrase subunit A [Clostridium perfringens str. 13] gi|18143664|dbj|BAB79713.1| DNA gyrase subunit A [Clostridium perfringens str. 13] Length = 763 Score = 429 bits (1104), Expect = e-118, Method: Compositional matrix adjust. Identities = 275/773 (35%), Positives = 438/773 (56%), Gaps = 54/773 (6%) Query: 11 TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70 +L E V + + +++ Y+ YA+S I RA+PD+RDG KPVHRRI+++M E+GL Sbjct: 2 SLNEGKVIPIDINKEMKKCYIDYAMSVIVGRALPDVRDGLKPVHRRILYSMQELGLYPER 61 Query: 71 AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130 ++K ARIVGEV+GK HPHGD SVYD+LVR+AQ F RY L+ G GNFG++DGDSAAA R Sbjct: 62 GYRKCARIVGEVLGKYHPHGDSSVYDALVRMAQDFSLRYMLVDGHGNFGSVDGDSAAAMR 121 Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190 YTEA+M ++A +L+ ++++ VDF ++ E+ EPVV PS++PNLL NG+SGIAVGMAT+ Sbjct: 122 YTEAKMNKIASEMLRDINKNTVDFIPNFDGEEKEPVVLPSRYPNLLVNGSSGIAVGMATN 181 Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250 IP HN+ E+ + +ALIDNPE++ +L+ YI GPDFPT GII+ + I +Y G+G Sbjct: 182 IPPHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAGIIM-GKSGIRAAYETGKGRI 240 Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDV 309 VRA+ +EE G I+VTE+PYQV K++LIE IA+L+ K+I + D+RDES E + Sbjct: 241 VVRAKAEIEE-ENGRHKIIVTELPYQVNKAKLIEYIADLVKDKKITGISDLRDESDREGM 299 Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369 R+V+ K R +P++ + ++ + M+ F + M L + PQ++ L +L ++ ++ Sbjct: 300 RMVIELK-RDANPNVTLNLLYKHTKMQDTFGVIMLAL-VDNQPQILNLKQVLVHYINFQK 357 Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTEN 426 +V+ RR+ F + R IL+GL+IA NIDE+I IIR+ K ++ RFSL+E Sbjct: 358 DVITRRTQFELNKAKERAHILEGLIIALDNIDEVINIIRSSKTSEIAKNTLIERFSLSEK 417 Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486 Q AIL +RLR L LE +I++E + L+ + ++++L S ++ I E+ E+K + Sbjct: 418 QAAAILEMRLRRLTGLERDKIENEYNELMKLIDYLNAILASEERLLEVIKEELLEIKAKY 477 Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD------- 539 S RRT ++ + + + +I++E + + +++ G+I+ + S Sbjct: 478 SDE-----RRT---QIEKQENEIDIEDLIQEEDVVITLTHTGYIKRISSDVYSAQKRGGK 529 Query: 540 -LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEAIQLLIDL 596 + A+ KE D ++ L T +L +T GK Y + A + +GR G + ++ L Sbjct: 530 GIQAMTTKEDDFVENVLVTSTHSNLLFFTTKGKVYKIKAYEVPDAGRTAKGTNLVNILPL 589 Query: 597 NHNQDIVTAFVYDST---------CKLLVVSS---KGNAFIVEESEIIANTRKGKTFLKV 644 ++ I T + KL +V K I + I N R+G L+ Sbjct: 590 EADEKIQTVLSFKDVQEDGYLFMGTKLGIVKKTPLKDFKNIRKNGLIALNLREGDELLRA 649 Query: 645 SSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICF 703 ++ VT D A+ F+ + M R GV+ S ++G ++ +C Sbjct: 650 KITYGDADIIFVTQDGNAIR--------FNETDVRPMGRTASGVKAISLREGDVA--VCM 699 Query: 704 KIC---EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753 I E L + G Y + N + RGG+G + K ++GK + + Sbjct: 700 DIAVEDEKLLVVSENG--YGKRTNLDEYKVQNRGGIGLITYKVSDKTGKVVGA 750 >gi|257417431|ref|ZP_05594425.1| conserved hypothetical protein [Enterococcus faecalis AR01/DG] gi|257159259|gb|EEU89219.1| conserved hypothetical protein [Enterococcus faecalis ARO1/DG] Length = 833 Score = 429 bits (1104), Expect = e-118, Method: Compositional matrix adjust. Identities = 268/771 (34%), Positives = 444/771 (57%), Gaps = 57/771 (7%) Query: 13 VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72 ++EN++ V+L ++E ++ YA+S I RA+PD+RDG KPVHRRI++ M+E+G+ Sbjct: 5 IKENIQDVNLTSEMKESFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 64 Query: 73 KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132 KKSARIVG+V+GK HPHGD ++Y+S+VR+AQPF R L+ G GNFG++DGD AAA RYT Sbjct: 65 KKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRAMLVDGHGNFGSVDGDGAAAMRYT 124 Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192 EARM+++A +L+ ++++ VDF+ Y++ + EPVV P++FPNLL NGT+GIAVGMAT+IP Sbjct: 125 EARMSKIALEMLRDINKNTVDFQGNYDDSEQEPVVLPARFPNLLVNGTTGIAVGMATNIP 184 Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252 HN+ E+ +A L+DNP+++ +L+E + GPDFPTGG+++ + I +Y G+G V Sbjct: 185 PHNLSEVIDATSLLMDNPDVTTNELMEVLPGPDFPTGGLVM-GKSGIRRAYETGKGSITV 243 Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRI 311 RA+ + E+ G I+VTE+PY V K++LIE+I+EL KRI + D+RDES+ E +RI Sbjct: 244 RAKVELTEMPNGKERILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMRI 303 Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371 V+ + R + +++ +++ ++ ++T F NM + G VP+++ L IL+ ++ H++EV Sbjct: 304 VIDVR-RDVSASVVLNNLYKMTALQTSFGFNMLAIEKG-VPKILSLKRILENYVEHQKEV 361 Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQV 428 + RR+ F + R IL+GL IA +IDEIIAIIR ++D+ K ++ RF ++ Q Sbjct: 362 ITRRTIFDKNKAEARAHILEGLRIALDHIDEIIAIIRGSQSDDEAKATLIERFEFSDRQA 421 Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488 AIL++RLR L LE +I++E LL ++ +L ++ I E+ +V+ F Sbjct: 422 QAILDMRLRRLTGLERDKIENEYQELLIFIADLEDILARPERVIEIIKTELNDVRTKFGD 481 Query: 489 STDLGRRRTTFC--EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV-------- 538 + RRT EV + + +IE+E + + ++N G+I+ + + Sbjct: 482 A-----RRTELLVGEVL----SLEDEDLIEEEEVVITLTNNGYIKRMANSEFRAQRRGGR 532 Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY---------------TLPAGNLLSG 583 + + + D +K + T D +L + GK Y +P NLL G Sbjct: 533 GVQGMGVHDDDFVKNLVSCSTHDTLLFFTNTGKVYRAKGYEIPEYGRTAKGIPVINLL-G 591 Query: 584 RGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLK 643 E IQ +I + + +++ +T K V + AF S I +N G + Sbjct: 592 IDSAEKIQAIISVEGKAE-AGKYLFFTTLKGTVKRTAVTAF----SNIRSN---GLIAIS 643 Query: 644 VSSEEKMKLVVKVTGDHVAVVGENRKL-LIFSIDQIPEMSRG----KGVRLQSYKDGGIS 698 + ++++ VV G+ ++G + + F + + +M R +G+RL+ D + Sbjct: 644 LKEDDELVNVVTTNGNQKMIIGTHAGYSVTFDENTVRDMGRTASGVRGIRLRE-NDYVVG 702 Query: 699 DVICFKICEGLTWIDSA-GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG 748 I + E L ++ G+ SE + G GK ++ K P +G Sbjct: 703 AAILDENKEVLVITENGYGKRTKASEYPVKGRGGKGIKTANITEKNGPLAG 753 >gi|255994574|ref|ZP_05427709.1| DNA gyrase, A subunit [Eubacterium saphenum ATCC 49989] gi|255993287|gb|EEU03376.1| DNA gyrase, A subunit [Eubacterium saphenum ATCC 49989] Length = 818 Score = 429 bits (1104), Expect = e-118, Method: Compositional matrix adjust. Identities = 263/749 (35%), Positives = 431/749 (57%), Gaps = 31/749 (4%) Query: 8 NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67 ++N +V EN+ + ++E YL YA+S I RA+PD+RDG KPVHRRI++ M +G+ Sbjct: 2 DNNKIVGENIIQNEIYSEMKESYLDYAMSVIVGRALPDVRDGLKPVHRRILYGMHNLGIT 61 Query: 68 FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAA 127 KKSAR VGEV+ K HPHGD S+YD++VR+AQ F RY L+ G GNFG+I+GD AA Sbjct: 62 PDKPHKKSARTVGEVMAKYHPHGDSSIYDAMVRMAQDFSIRYMLVDGHGNFGSIEGDGAA 121 Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187 A RYTEARM+ +A +L+ +D+ VDF +++E+ EP V PS+FP LL NG++GIAVGM Sbjct: 122 AMRYTEARMSHLALQMLRDIDKKTVDFVPNFDDEEEEPSVLPSRFPQLLVNGSNGIAVGM 181 Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247 ATSIP HN+ E+ +A + LID+ E S+E+L + I GPDFPTG I+ R I E Y G+ Sbjct: 182 ATSIPPHNLGEVIDATVKLIDDRETSVEELAKIIKGPDFPTGAKIL-GRAGIREGYLTGQ 240 Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-A 306 G ++R+ +E+ +G +VV+EIPYQV K+RL+EKI EL+ K I + +IRDE+ Sbjct: 241 GKIKIRSTIDIEQTKKGKEQLVVSEIPYQVNKTRLMEKIGELVKEKIIEGISEIRDETNK 300 Query: 307 EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366 E +RIV+ K R + +++ ++ + ++ + M L G P+ + L IL E++ Sbjct: 301 EGIRIVIELK-RDANASIVLNKLYKHTSLQESMSMIMIALVNGE-PKKLTLLQILNEYIK 358 Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE-DKPKPVMVSRFSLTE 425 H++E++ RR+ F ++ + R IL+GL IA NIDEII IIR+ D K ++ FSL+E Sbjct: 359 HQKEIVTRRTQFDLEKAENRAHILEGLRIALDNIDEIIKIIRSSYDDAKQKLMDTFSLSE 418 Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485 Q AIL+++L L+ LE +I++E L + +L++ N I E+ E+KE Sbjct: 419 VQTQAILDMKLARLQGLEREKIENEYSELQKKISYYKEILSNEGLLMNVIKEELLEIKEK 478 Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHS 537 ++ RRT + D ++ +IE++ +T+ ++++G+ + + K Sbjct: 479 YADE-----RRTQIVD---DDTNIEEEDLIERKNVTITLTHKGYAKRMDVDEYKTQKRGG 530 Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--ID 595 ++ L +E D +K ++ T D +L + GKA+ + A + + I ++ ++ Sbjct: 531 KGITGLKTRENDFVKNIINTSTHDDLLFFTNYGKAHKIKAYQIPEATRTAKGIPIINFVN 590 Query: 596 LNHNQDIVTAFVYDSTCK---LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652 L+ ++I D + L+ V+S+G V+ SE +N + G +K+ +K+ Sbjct: 591 LDKTEEITAVIPIDEFREDKYLIAVTSQGLIKKVKLSEFESNRKSGLIAVKLHDGDKLIA 650 Query: 653 VVKVTGDHVAVVGENRKLLI-FSIDQIPEMSRGK-GVRLQSYKDGGISDVICFK-ICEGL 709 + K GD ++ + + I F+ + + R GV+ + K G ++I + + +G Sbjct: 651 IEKTNGDDDVLIVTRKGMSIRFNENDVRATGRQSIGVKAITLK--GDDEIISMQLVSKGK 708 Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGS 738 + + + Y + L RGG G+ Sbjct: 709 ELLVVSKKGYGKRTGTDKYTLQTRGGKGN 737 >gi|255971554|ref|ZP_05422140.1| conserved hypothetical protein [Enterococcus faecalis T1] gi|257418837|ref|ZP_05595831.1| DNA gyrase A gyrA [Enterococcus faecalis T11] gi|255962572|gb|EET95048.1| conserved hypothetical protein [Enterococcus faecalis T1] gi|257160665|gb|EEU90625.1| DNA gyrase A gyrA [Enterococcus faecalis T11] Length = 813 Score = 429 bits (1104), Expect = e-118, Method: Compositional matrix adjust. Identities = 268/771 (34%), Positives = 444/771 (57%), Gaps = 57/771 (7%) Query: 13 VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72 ++EN++ V+L ++E ++ YA+S I RA+PD+RDG KPVHRRI++ M+E+G+ Sbjct: 5 IKENIQDVNLTSEMKESFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 64 Query: 73 KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132 KKSARIVG+V+GK HPHGD ++Y+S+VR+AQPF R L+ G GNFG++DGD AAA RYT Sbjct: 65 KKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRAMLVDGHGNFGSVDGDGAAAMRYT 124 Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192 EARM+++A +L+ ++++ VDF+ Y++ + EPVV P++FPNLL NGT+GIAVGMAT+IP Sbjct: 125 EARMSKIALEMLRDINKNTVDFQGNYDDSEQEPVVLPARFPNLLVNGTTGIAVGMATNIP 184 Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252 HN+ E+ +A L+DNP+++ +L+E + GPDFPTGG+++ + I +Y G+G V Sbjct: 185 PHNLSEVIDATSLLMDNPDVTTNELMEVLPGPDFPTGGLVM-GKSGIRRAYETGKGSITV 243 Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRI 311 RA+ + E+ G I+VTE+PY V K++LIE+I+EL KRI + D+RDES+ E +RI Sbjct: 244 RAKVELTEMPNGKERILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMRI 303 Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371 V+ + R + +++ +++ ++ ++T F NM + G VP+++ L IL+ ++ H++EV Sbjct: 304 VIDVR-RDVSASVVLNNLYKMTALQTSFGFNMLAIEKG-VPKILSLKRILENYVEHQKEV 361 Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQV 428 + RR+ F + R IL+GL IA +IDEIIAIIR ++D+ K ++ RF ++ Q Sbjct: 362 ITRRTIFDKNKAEARAHILEGLRIALDHIDEIIAIIRGSQSDDEAKATLIERFEFSDRQA 421 Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488 AIL++RLR L LE +I++E LL ++ +L ++ I E+ +V+ F Sbjct: 422 QAILDMRLRRLTGLERDKIENEYQELLKFIADLEDILARPERVIEIIKTELNDVRTKFGD 481 Query: 489 STDLGRRRTTFC--EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV-------- 538 + RRT EV + + +IE+E + + ++N G+I+ + + Sbjct: 482 A-----RRTELLVGEVL----SLEDEDLIEEEEVVITLTNNGYIKRMANSEFRAQRRGGR 532 Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY---------------TLPAGNLLSG 583 + + + D +K + T D +L + GK Y +P NLL G Sbjct: 533 GVQGMGVHDDDFVKNLVSCSTHDTLLFFTNTGKVYRAKGYEIPEYGRTAKGIPVINLL-G 591 Query: 584 RGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLK 643 E IQ +I + + +++ +T K V + AF S I +N G + Sbjct: 592 IDSAEKIQAIISVEGKAE-AGKYLFFTTLKGTVKRTAVTAF----SNIRSN---GLIAIS 643 Query: 644 VSSEEKMKLVVKVTGDHVAVVGENRKL-LIFSIDQIPEMSRG----KGVRLQSYKDGGIS 698 + ++++ VV G+ ++G + + F + + +M R +G+RL+ D + Sbjct: 644 LKEDDELVNVVTTNGNQKMIIGTHAGYSVTFDENTVRDMGRTASGVRGIRLRE-NDYVVG 702 Query: 699 DVICFKICEGLTWIDSA-GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG 748 I + E L ++ G+ SE + G GK ++ K P +G Sbjct: 703 AAILDENKEVLVITENGYGKRTKASEYPVKGRGGKGIKTANITEKNGPLAG 753 >gi|34763291|ref|ZP_00144249.1| DNA gyrase subunit A [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|27887039|gb|EAA24152.1| DNA gyrase subunit A [Fusobacterium nucleatum subsp. vincentii ATCC 49256] Length = 811 Score = 429 bits (1103), Expect = e-118, Method: Compositional matrix adjust. Identities = 240/621 (38%), Positives = 373/621 (60%), Gaps = 55/621 (8%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 NV + L+E YL Y++S I RA+PD+RDG KPVHRRI+ AM+EMG+ FKKS Sbjct: 3 NVDNRYIEEELKESYLDYSMSVIVSRALPDVRDGLKPVHRRILFAMNEMGMTNDKPFKKS 62 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 ARIVGEV+GK HPHGD +VY ++VR+AQ F RY L+ G GNFG+IDGDSAAA RYTEAR Sbjct: 63 ARIVGEVLGKYHPHGDSAVYGTMVRMAQDFNYRYLLVEGHGNFGSIDGDSAAAMRYTEAR 122 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 M ++ +L+ +D++ +D+R +++ EP V P+K PNLL NG GIAVGMAT+IP HN Sbjct: 123 MEKITAELLEDIDKNTIDWRKNFDDSLDEPTVLPAKLPNLLLNGAIGIAVGMATNIPPHN 182 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 + E+ + LA+IDN +I I +L+ YI GPDFPTG II + R I+E+Y+ GRG +VR + Sbjct: 183 LGELVDGILAIIDNKDIEILELMNYIKGPDFPTGAII-DGRAGIIEAYKTGRGKIKVRGK 241 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLF 314 +EE+ G I+V+EIPYQ+ K+ LIEKIA L+ K+I + D+RDES E +RI++ Sbjct: 242 IDIEELKNGKSNIIVSEIPYQLNKANLIEKIANLVKEKKITEISDLRDESNREGIRILIE 301 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K + +P+L++ ++ +D++T F + M L + VP+V+ L +L E++ HR +V+ R Sbjct: 302 VK-KGEEPELVLNKLYKYTDLQTTFGVIMLSL-VNNVPRVLNLKEMLNEYIKHRFDVITR 359 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAI 431 R++F + ++R ILKG IA NID II +IR + ++ +++ T+ Q +I Sbjct: 360 RTAFDLDKAEKRAHILKGYQIALENIDRIIELIRASSDGTVAREQLIEKYAFTDIQARSI 419 Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491 L+++L+ L L EKEKID+ ++ +I I+E++E+ + Sbjct: 420 LDMKLQRLTGL--------------EKEKIDT-------EFKEIEALIKELREVLEDNNK 458 Query: 492 L---------------GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSH 536 + +R T E R + L + +I+ E I + +N+G+++ +++ Sbjct: 459 IYEIMKKELLELKEKYNDKRRTKIEEERME--ILPEDLIKDEEIIITYTNKGYVKRIEAS 516 Query: 537 SVD--------LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGH 586 +SAL+ E D + + A T D I++ + GK Y + A + LS + Sbjct: 517 KYKAQKRGGKGVSALNTIEDDFAEKIISASTLDTIMVFTDKGKVYNIRAYEIPDLSKQSR 576 Query: 587 GEAIQLLIDLNHNQDIVTAFV 607 G + +I+L+ + + V Sbjct: 577 GRLLSNIINLSEGEKVRDTIV 597 >gi|257081352|ref|ZP_05575713.1| conserved hypothetical protein [Enterococcus faecalis E1Sol] gi|256989382|gb|EEU76684.1| conserved hypothetical protein [Enterococcus faecalis E1Sol] Length = 838 Score = 429 bits (1103), Expect = e-118, Method: Compositional matrix adjust. Identities = 268/771 (34%), Positives = 444/771 (57%), Gaps = 57/771 (7%) Query: 13 VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72 ++EN++ V+L ++E ++ YA+S I RA+PD+RDG KPVHRRI++ M+E+G+ Sbjct: 5 IKENIQDVNLTSEMKESFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 64 Query: 73 KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132 KKSARIVG+V+GK HPHGD ++Y+S+VR+AQPF R L+ G GNFG++DGD AAA RYT Sbjct: 65 KKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRAMLVDGHGNFGSVDGDGAAAMRYT 124 Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192 EARM+++A +L+ ++++ VDF+ Y++ + EPVV P++FPNLL NGT+GIAVGMAT+IP Sbjct: 125 EARMSKIALEMLRDINKNTVDFQGNYDDSEQEPVVLPARFPNLLVNGTTGIAVGMATNIP 184 Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252 HN+ E+ +A L+DNP+++ +L+E + GPDFPTGG+++ + I +Y G+G V Sbjct: 185 PHNLSEVIDATSLLMDNPDVTTNELMEVLPGPDFPTGGLVM-GKSGIRRAYETGKGSITV 243 Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRI 311 RA+ + E+ G I+VTE+PY V K++LIE+I+EL KRI + D+RDES+ E +RI Sbjct: 244 RAKVELTEMPNGKERILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMRI 303 Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371 V+ + R + +++ +++ ++ ++T F NM + G VP+++ L IL+ ++ H++EV Sbjct: 304 VIDVR-RDVSASVVLNNLYKMTALQTSFGFNMLAIEKG-VPKILSLKRILENYVEHQKEV 361 Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQV 428 + RR+ F + R IL+GL IA +IDEIIAIIR ++D+ K ++ RF ++ Q Sbjct: 362 ITRRTIFDKNKAEARAHILEGLRIALDHIDEIIAIIRGSQSDDEAKATLIERFEFSDRQA 421 Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488 AIL++RLR L LE +I++E LL ++ +L ++ I E+ +V+ F Sbjct: 422 QAILDMRLRRLTGLERDKIENEYQELLKFIADLEDILARPERVIEIIKTELNDVRTKFGD 481 Query: 489 STDLGRRRTTFC--EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV-------- 538 + RRT EV + + +IE+E + + ++N G+I+ + + Sbjct: 482 A-----RRTELLVGEVL----SLEDEDLIEEEEVVITLTNNGYIKRMANSEFRAQRRGGR 532 Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY---------------TLPAGNLLSG 583 + + + D +K + T D +L + GK Y +P NLL G Sbjct: 533 GVQGMGVHDDDFVKNLVSCSTHDTLLFFTNTGKVYRAKGYEIPEYGRTAKGIPVINLL-G 591 Query: 584 RGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLK 643 E IQ +I + + +++ +T K V + AF S I +N G + Sbjct: 592 IDSAEKIQAIISVEGKAE-AGKYLFFTTLKGTVKRTAVTAF----SNIRSN---GLIAIS 643 Query: 644 VSSEEKMKLVVKVTGDHVAVVGENRKL-LIFSIDQIPEMSRG----KGVRLQSYKDGGIS 698 + ++++ VV G+ ++G + + F + + +M R +G+RL+ D + Sbjct: 644 LKEDDELVNVVTTNGNQKMIIGTHAGYSVTFDENTVRDMGRTASGVRGIRLRE-NDYVVG 702 Query: 699 DVICFKICEGLTWIDSA-GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG 748 I + E L ++ G+ SE + G GK ++ K P +G Sbjct: 703 AAILDENKEVLVITENGYGKRTKASEYPVKGRGGKGIKTANITEKNGPLAG 753 >gi|29374667|ref|NP_813819.1| DNA gyrase, A subunit [Enterococcus faecalis V583] gi|229547124|ref|ZP_04435849.1| DNA gyrase, A subunit [Enterococcus faecalis TX1322] gi|256618522|ref|ZP_05475368.1| conserved hypothetical protein [Enterococcus faecalis ATCC 4200] gi|256761859|ref|ZP_05502439.1| conserved hypothetical protein [Enterococcus faecalis T3] gi|256854986|ref|ZP_05560347.1| hypothetical protein EFYG_02229 [Enterococcus faecalis T8] gi|256957010|ref|ZP_05561181.1| conserved hypothetical protein [Enterococcus faecalis DS5] gi|257078687|ref|ZP_05573048.1| conserved hypothetical protein [Enterococcus faecalis JH1] gi|257084009|ref|ZP_05578370.1| conserved hypothetical protein [Enterococcus faecalis Fly1] gi|257087839|ref|ZP_05582200.1| conserved hypothetical protein [Enterococcus faecalis D6] gi|257421348|ref|ZP_05598338.1| DNA gyrase subunit A gyrA [Enterococcus faecalis X98] gi|294781254|ref|ZP_06746601.1| DNA gyrase, A subunit [Enterococcus faecalis PC1.1] gi|300862176|ref|ZP_07108256.1| DNA gyrase, A subunit [Enterococcus faecalis TUSoD Ef11] gi|307268922|ref|ZP_07550286.1| DNA gyrase, A subunit [Enterococcus faecalis TX4248] gi|307274017|ref|ZP_07555227.1| DNA gyrase, A subunit [Enterococcus faecalis TX0855] gi|307276494|ref|ZP_07557614.1| DNA gyrase, A subunit [Enterococcus faecalis TX2134] gi|307284064|ref|ZP_07564234.1| DNA gyrase, A subunit [Enterococcus faecalis TX0860] gi|307287176|ref|ZP_07567247.1| DNA gyrase, A subunit [Enterococcus faecalis TX0109] gi|307296595|ref|ZP_07576415.1| DNA gyrase, A subunit [Enterococcus faecalis TX0411] gi|312901291|ref|ZP_07760574.1| DNA gyrase, A subunit [Enterococcus faecalis TX0470] gi|312951715|ref|ZP_07770609.1| DNA gyrase, A subunit [Enterococcus faecalis TX0102] gi|15982568|dbj|BAB69479.1| DNA gyrase A subunit [Enterococcus faecalis] gi|29342125|gb|AAO79891.1| DNA gyrase, A subunit [Enterococcus faecalis V583] gi|229307706|gb|EEN73693.1| DNA gyrase, A subunit [Enterococcus faecalis TX1322] gi|256598049|gb|EEU17225.1| conserved hypothetical protein [Enterococcus faecalis ATCC 4200] gi|256683110|gb|EEU22805.1| conserved hypothetical protein [Enterococcus faecalis T3] gi|256709499|gb|EEU24546.1| hypothetical protein EFYG_02229 [Enterococcus faecalis T8] gi|256947506|gb|EEU64138.1| conserved hypothetical protein [Enterococcus faecalis DS5] gi|256986717|gb|EEU74019.1| conserved hypothetical protein [Enterococcus faecalis JH1] gi|256992039|gb|EEU79341.1| conserved hypothetical protein [Enterococcus faecalis Fly1] gi|256995869|gb|EEU83171.1| conserved hypothetical protein [Enterococcus faecalis D6] gi|257163172|gb|EEU93132.1| DNA gyrase subunit A gyrA [Enterococcus faecalis X98] gi|294451717|gb|EFG20172.1| DNA gyrase, A subunit [Enterococcus faecalis PC1.1] gi|295112345|emb|CBL30982.1| DNA gyrase subunit A [Enterococcus sp. 7L76] gi|300848701|gb|EFK76458.1| DNA gyrase, A subunit [Enterococcus faecalis TUSoD Ef11] gi|306495931|gb|EFM65519.1| DNA gyrase, A subunit [Enterococcus faecalis TX0411] gi|306501774|gb|EFM71065.1| DNA gyrase, A subunit [Enterococcus faecalis TX0109] gi|306503435|gb|EFM72684.1| DNA gyrase, A subunit [Enterococcus faecalis TX0860] gi|306506821|gb|EFM75971.1| DNA gyrase, A subunit [Enterococcus faecalis TX2134] gi|306509325|gb|EFM78385.1| DNA gyrase, A subunit [Enterococcus faecalis TX0855] gi|306514730|gb|EFM83281.1| DNA gyrase, A subunit [Enterococcus faecalis TX4248] gi|310630288|gb|EFQ13571.1| DNA gyrase, A subunit [Enterococcus faecalis TX0102] gi|311291668|gb|EFQ70224.1| DNA gyrase, A subunit [Enterococcus faecalis TX0470] gi|315026672|gb|EFT38604.1| DNA gyrase, A subunit [Enterococcus faecalis TX2137] gi|315030117|gb|EFT42049.1| DNA gyrase, A subunit [Enterococcus faecalis TX4000] gi|315033551|gb|EFT45483.1| DNA gyrase, A subunit [Enterococcus faecalis TX0017] gi|315036374|gb|EFT48306.1| DNA gyrase, A subunit [Enterococcus faecalis TX0027] gi|315143590|gb|EFT87606.1| DNA gyrase, A subunit [Enterococcus faecalis TX2141] gi|315148272|gb|EFT92288.1| DNA gyrase, A subunit [Enterococcus faecalis TX4244] gi|315153722|gb|EFT97738.1| DNA gyrase, A subunit [Enterococcus faecalis TX0031] gi|315155118|gb|EFT99134.1| DNA gyrase, A subunit [Enterococcus faecalis TX0043] gi|315158752|gb|EFU02769.1| DNA gyrase, A subunit [Enterococcus faecalis TX0312] gi|315170507|gb|EFU14524.1| DNA gyrase, A subunit [Enterococcus faecalis TX1342] gi|315174177|gb|EFU18194.1| DNA gyrase, A subunit [Enterococcus faecalis TX1346] gi|315573986|gb|EFU86177.1| DNA gyrase, A subunit [Enterococcus faecalis TX0309B] gi|315581937|gb|EFU94128.1| DNA gyrase, A subunit [Enterococcus faecalis TX0309A] gi|323479245|gb|ADX78684.1| DNA gyrase, A subunit [Enterococcus faecalis 62] Length = 833 Score = 429 bits (1103), Expect = e-118, Method: Compositional matrix adjust. Identities = 268/771 (34%), Positives = 444/771 (57%), Gaps = 57/771 (7%) Query: 13 VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72 ++EN++ V+L ++E ++ YA+S I RA+PD+RDG KPVHRRI++ M+E+G+ Sbjct: 5 IKENIQDVNLTSEMKESFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 64 Query: 73 KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132 KKSARIVG+V+GK HPHGD ++Y+S+VR+AQPF R L+ G GNFG++DGD AAA RYT Sbjct: 65 KKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRAMLVDGHGNFGSVDGDGAAAMRYT 124 Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192 EARM+++A +L+ ++++ VDF+ Y++ + EPVV P++FPNLL NGT+GIAVGMAT+IP Sbjct: 125 EARMSKIALEMLRDINKNTVDFQGNYDDSEQEPVVLPARFPNLLVNGTTGIAVGMATNIP 184 Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252 HN+ E+ +A L+DNP+++ +L+E + GPDFPTGG+++ + I +Y G+G V Sbjct: 185 PHNLSEVIDATSLLMDNPDVTTNELMEVLPGPDFPTGGLVM-GKSGIRRAYETGKGSITV 243 Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRI 311 RA+ + E+ G I+VTE+PY V K++LIE+I+EL KRI + D+RDES+ E +RI Sbjct: 244 RAKVELTEMPNGKERILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMRI 303 Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371 V+ + R + +++ +++ ++ ++T F NM + G VP+++ L IL+ ++ H++EV Sbjct: 304 VIDVR-RDVSASVVLNNLYKMTALQTSFGFNMLAIEKG-VPKILSLKRILENYVEHQKEV 361 Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQV 428 + RR+ F + R IL+GL IA +IDEIIAIIR ++D+ K ++ RF ++ Q Sbjct: 362 ITRRTIFDKNKAEARAHILEGLRIALDHIDEIIAIIRGSQSDDEAKATLIERFEFSDRQA 421 Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488 AIL++RLR L LE +I++E LL ++ +L ++ I E+ +V+ F Sbjct: 422 QAILDMRLRRLTGLERDKIENEYQELLKFIADLEDILARPERVIEIIKTELNDVRTKFGD 481 Query: 489 STDLGRRRTTFC--EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV-------- 538 + RRT EV + + +IE+E + + ++N G+I+ + + Sbjct: 482 A-----RRTELLVGEVL----SLEDEDLIEEEEVVITLTNNGYIKRMANSEFRAQRRGGR 532 Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY---------------TLPAGNLLSG 583 + + + D +K + T D +L + GK Y +P NLL G Sbjct: 533 GVQGMGVHDDDFVKNLVSCSTHDTLLFFTNTGKVYRAKGYEIPEYGRTAKGIPVINLL-G 591 Query: 584 RGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLK 643 E IQ +I + + +++ +T K V + AF S I +N G + Sbjct: 592 IDSAEKIQAIISVEGKAE-AGKYLFFTTLKGTVKRTAVTAF----SNIRSN---GLIAIS 643 Query: 644 VSSEEKMKLVVKVTGDHVAVVGENRKL-LIFSIDQIPEMSRG----KGVRLQSYKDGGIS 698 + ++++ VV G+ ++G + + F + + +M R +G+RL+ D + Sbjct: 644 LKEDDELVNVVTTNGNQKMIIGTHAGYSVTFDENTVRDMGRTASGVRGIRLRE-NDYVVG 702 Query: 699 DVICFKICEGLTWIDSA-GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG 748 I + E L ++ G+ SE + G GK ++ K P +G Sbjct: 703 AAILDENKEVLVITENGYGKRTKASEYPVKGRGGKGIKTANITEKNGPLAG 753 >gi|153212262|ref|ZP_01948050.1| DNA gyrase, subunit A [Vibrio cholerae 1587] gi|124116640|gb|EAY35460.1| DNA gyrase, subunit A [Vibrio cholerae 1587] Length = 894 Score = 429 bits (1103), Expect = e-118, Method: Compositional matrix adjust. Identities = 258/646 (39%), Positives = 379/646 (58%), Gaps = 64/646 (9%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + V++ L YL YA+S I RA+PD+RDG KPVHRR++ AM+ +G D+ A+KKSA Sbjct: 8 ITPVNIEDELRSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKKSA 67 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG+IDGDSAAA RYTE RM Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVRM 127 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 +++A +L +D++ VD+ Y+ + P V P+K PNLL NG+SGIAVGMAT+IP HN+ Sbjct: 128 SKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGSSGIAVGMATNIPPHNL 187 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ + LA IDN I+I++L++YI GPDFPT +I R+ I+++Y+ GRG +R++ Sbjct: 188 GEVIDGCLAYIDNEAITIDELMDYIPGPDFPTAALI-SGRKGIIDAYKTGRGKVYMRSKA 246 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFP 315 +E G I+V+EIPYQV K+RLIEKIAEL+ K++ + +RDES +D +RIV+ Sbjct: 247 EIETDKNGKETIIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDGMRIVIEC 306 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 K R ++++ +++ + ++T F +NM L G+ P++ L +LK ++ HRREV+ RR Sbjct: 307 K-RDAVGEVVLNNLYANTQLQTTFGINMVALDNGQ-PKLFNLKEMLKCFVDHRREVVTRR 364 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR------------ 420 + F ++ R IL+GL +A NIDEII +IR P K +++R Sbjct: 365 TIFELRKARERAHILEGLALALANIDEIIELIRRASTPAEAKEGLIARGWDLGNVAAMLE 424 Query: 421 ----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458 + LTE Q AIL+LRL L LE +I E LL E Sbjct: 425 RAGTDAARPEWLEPQYGIRDGKYFLTEQQAQAILDLRLHKLTGLEHEKILDEYKQLLEEI 484 Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518 + +L S ++ I E+ ++ FS + RRT E++ A + +I +E Sbjct: 485 AALMHILASTERLMEVIREELEAIRAGFSDA-----RRT---EITAATHDIDMEELIARE 536 Query: 519 PITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570 + V +S+ G+++ + + SA KE D ++ L A+T D ILL ST G Sbjct: 537 DVVVTLSHEGYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFSTRG 596 Query: 571 KAYTLPAGNL-LSGR-GHGEAIQLLIDLNHNQDI-----VTAFVYD 609 K Y + L L+ R G+ I L+ L N+ I VT F D Sbjct: 597 KTYRMKVYQLPLASRTARGKPIVNLLPLEENERITAILPVTEFSED 642 >gi|255974527|ref|ZP_05425113.1| conserved hypothetical protein [Enterococcus faecalis T2] gi|255967399|gb|EET98021.1| conserved hypothetical protein [Enterococcus faecalis T2] Length = 807 Score = 429 bits (1103), Expect = e-118, Method: Compositional matrix adjust. Identities = 268/771 (34%), Positives = 444/771 (57%), Gaps = 57/771 (7%) Query: 13 VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72 ++EN++ V+L ++E ++ YA+S I RA+PD+RDG KPVHRRI++ M+E+G+ Sbjct: 5 IKENIQDVNLTSEMKESFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 64 Query: 73 KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132 KKSARIVG+V+GK HPHGD ++Y+S+VR+AQPF R L+ G GNFG++DGD AAA RYT Sbjct: 65 KKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRAMLVDGHGNFGSVDGDGAAAMRYT 124 Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192 EARM+++A +L+ ++++ VDF+ Y++ + EPVV P++FPNLL NGT+GIAVGMAT+IP Sbjct: 125 EARMSKIALEMLRDINKNTVDFQGNYDDSEQEPVVLPARFPNLLVNGTTGIAVGMATNIP 184 Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252 HN+ E+ +A L+DNP+++ +L+E + GPDFPTGG+++ + I +Y G+G V Sbjct: 185 PHNLSEVIDATSLLMDNPDVTTNELMEVLPGPDFPTGGLVM-GKSGIRRAYETGKGSITV 243 Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRI 311 RA+ + E+ G I+VTE+PY V K++LIE+I+EL KRI + D+RDES+ E +RI Sbjct: 244 RAKVELTEMPNGKERILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMRI 303 Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371 V+ + R + +++ +++ ++ ++T F NM + G VP+++ L IL+ ++ H++EV Sbjct: 304 VIDVR-RDVSASVVLNNLYKMTALQTSFGFNMLAIEKG-VPKILSLKRILENYVEHQKEV 361 Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQV 428 + RR+ F + R IL+GL IA +IDEIIAIIR ++D+ K ++ RF ++ Q Sbjct: 362 ITRRTIFDKNKAEARAHILEGLRIALDHIDEIIAIIRGSQSDDEAKATLIERFEFSDRQA 421 Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488 AIL++RLR L LE +I++E LL ++ +L ++ I E+ +V+ F Sbjct: 422 QAILDMRLRRLTGLERDKIENEYQELLKFIADLEDILARPERVIEIIKTELNDVRTKFGD 481 Query: 489 STDLGRRRTTFC--EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV-------- 538 + RRT EV + + +IE+E + + ++N G+I+ + + Sbjct: 482 A-----RRTELLVGEVL----SLEDEDLIEEEEVVITLTNNGYIKRMANSEFRAQRRGGR 532 Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY---------------TLPAGNLLSG 583 + + + D +K + T D +L + GK Y +P NLL G Sbjct: 533 GVQGMGVHDDDFVKNLVSCSTHDTLLFFTNTGKVYRAKGYEIPEYGRTAKGIPVINLL-G 591 Query: 584 RGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLK 643 E IQ +I + + +++ +T K V + AF S I +N G + Sbjct: 592 IDSAEKIQAIISVEGKAE-AGKYLFFTTLKGTVKRTAVTAF----SNIRSN---GLIAIS 643 Query: 644 VSSEEKMKLVVKVTGDHVAVVGENRKL-LIFSIDQIPEMSRG----KGVRLQSYKDGGIS 698 + ++++ VV G+ ++G + + F + + +M R +G+RL+ D + Sbjct: 644 LKEDDELVNVVTTNGNQKMIIGTHAGYSVTFDENTVRDMGRTASGVRGIRLRE-NDYVVG 702 Query: 699 DVICFKICEGLTWIDSA-GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG 748 I + E L ++ G+ SE + G GK ++ K P +G Sbjct: 703 AAILDENKEVLVITENGYGKRTKASEYPVKGRGGKGIKTANITEKNGPLAG 753 >gi|258624431|ref|ZP_05719378.1| DNA gyrase, subunit A [Vibrio mimicus VM603] gi|262165509|ref|ZP_06033246.1| DNA gyrase subunit A [Vibrio mimicus VM223] gi|258583278|gb|EEW08080.1| DNA gyrase, subunit A [Vibrio mimicus VM603] gi|262025225|gb|EEY43893.1| DNA gyrase subunit A [Vibrio mimicus VM223] Length = 894 Score = 429 bits (1103), Expect = e-118, Method: Compositional matrix adjust. Identities = 258/646 (39%), Positives = 380/646 (58%), Gaps = 64/646 (9%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + V++ L YL YA+S I RA+PD+RDG KPVHRR++ AM+ +G D+ A+KKSA Sbjct: 8 ITPVNIEDELRSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKKSA 67 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG+IDGDSAAA RYTE RM Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVRM 127 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 +++A +L +D++ VD+ Y+ + P V P+K PNLL NG+SGIAVGMAT+IP HN+ Sbjct: 128 SKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGSSGIAVGMATNIPPHNL 187 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ + LA IDN I+I++L++YI GPDFPT +I R+ I+++Y+ GRG +R++ Sbjct: 188 GEVIDGCLAYIDNEAITIDELMDYIPGPDFPTAALI-SGRKGIIDAYKTGRGKVYMRSKA 246 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFP 315 +E G I+V+EIPYQV K+RLIEKIAEL+ K++ + +RDES +D +RIV+ Sbjct: 247 EIETDKNGKETIIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDGMRIVIEC 306 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 K R ++++ +++ + ++T F +NM L G+ P++ L +LK ++ HRREV+ RR Sbjct: 307 K-RDAVGEVVLNNLYANTQLQTTFGINMVALDNGQ-PKLFNLKEMLKCFVDHRREVVTRR 364 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR------------ 420 + F ++ R IL+GL +A NIDEII +IR+ P K +++R Sbjct: 365 TIFELRKARERAHILEGLALALANIDEIIELIRHAATPAEAKEGLIARGWDLGNVAAMLE 424 Query: 421 ----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458 + LTE Q AIL+LRL L LE +I E LL E Sbjct: 425 RAGTDAARPEWLEPQYGIRDGKYFLTEQQAQAILDLRLHKLTGLEHEKILDEYKQLLEEI 484 Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518 + +L S ++ I E+ ++ FS + RRT E++ A + +I +E Sbjct: 485 AALMHILASTERLMEVIREELEAIRAGFSDA-----RRT---EITAATHDIDMEELIARE 536 Query: 519 PITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570 + V +S+ G+++ + + SA KE D ++ L A+T D ILL ST G Sbjct: 537 DVVVTLSHEGYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFSTRG 596 Query: 571 KAYTLPAGNL-LSGR-GHGEAIQLLIDLNHNQDI-----VTAFVYD 609 K Y + L L+ R G+ I L+ L N+ I VT F D Sbjct: 597 KTYRMKVYQLPLASRTARGKPIVNLLPLEENERITAILPVTEFSED 642 >gi|326789145|ref|YP_004306966.1| DNA gyrase subunit alpha [Clostridium lentocellum DSM 5427] gi|326539909|gb|ADZ81768.1| DNA gyrase, A subunit [Clostridium lentocellum DSM 5427] Length = 844 Score = 429 bits (1103), Expect = e-118, Method: Compositional matrix adjust. Identities = 262/690 (37%), Positives = 399/690 (57%), Gaps = 44/690 (6%) Query: 30 YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89 Y+ YA+S I RA+PD+RDG KPVHRRI+++MSE+GL ++KSARIVG+ +GK HPH Sbjct: 24 YIDYAMSVIVSRALPDVRDGLKPVHRRILYSMSELGLGSDKQYRKSARIVGDTMGKYHPH 83 Query: 90 GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDE 149 GD S+Y ++VR+AQ F RYPL+ GQGNFG+IDGDS AA RYTEARM+++ L+L +D+ Sbjct: 84 GDSSIYGAMVRMAQEFSTRYPLVDGQGNFGSIDGDSPAAMRYTEARMSKMTALMLADIDK 143 Query: 150 DAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDN 209 D V+FR ++E EP V PS+FPNLL NG+SGIAVGMAT+IP HN+ E+ + +IDN Sbjct: 144 DTVEFRPNFDESSKEPCVLPSRFPNLLVNGSSGIAVGMATNIPPHNLTEVVNGVIRMIDN 203 Query: 210 ----------PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 E IE+L+ I GPDFPTG I R I ++YR GRG +V+A+ +E Sbjct: 204 YMGENEEHEVRETEIEELMAIIEGPDFPTGATIY-GRYGIDQAYRTGRGKVKVKAKAEIE 262 Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319 + G IVVTEIPY V KS LIEK+A+L+ ++I + DIRDES + ++ R Sbjct: 263 AMQGGKNRIVVTEIPYMVNKSSLIEKMADLVKERKIDGITDIRDESDRNGISMVIELRRD 322 Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379 ++P +++ ++ + ++ F +NM L + P+V+ L IL+E+L H++EV+ RR+ F Sbjct: 323 VNPTVILNQLYKYTQLQDTFSINMLALVDDK-PKVLNLKQILEEYLKHQKEVVTRRTQFE 381 Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAILNLRL 436 + + R IL+GL A NID ++++IR N + K ++ LTE Q AI+ +RL Sbjct: 382 LNKAEARAHILEGLRKALDNIDLVVSLIRESANVQEAKDKLMEAIELTEIQAQAIVEMRL 441 Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496 R+L LE +I E LL + E + S+L S + + I EI EVK+ + GRR Sbjct: 442 RALTGLEREKIDQEYAELLEKIEYLKSILASEYKLLSVIKDEITEVKQKYGD----GRRT 497 Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD--------LSALHFKEG 548 + D L I++E I V I+ G+I+ + + + ++ E Sbjct: 498 DITIDEDEYDIEDL----IDEENIVVTITQLGYIKRIPLDTYKNQNRGGKGIIGVNTIED 553 Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNL-LSGR-GHGEAIQLLIDLNHNQDIVTAF 606 D +K + I+ + GKAY + + +GR G AI L++L+ ++ I F Sbjct: 554 DFIKQLFVTTNFNYIMFFTNKGKAYRIKGYRIPEAGRTARGTAIVNLLELDKDEKITAVF 613 Query: 607 V---YDSTCKLLVVSSKGNAFIVEESEI--IANTRKGKTF-LKVSSEEKMKLVVKVTG-D 659 ++ L +V+ KG ++++ + N RKG L ++ E+++ V + T D Sbjct: 614 PIKEFEDNTFLTMVTKKGQ---IKKTPLKDFRNIRKGGLIALSLNEEDELVDVHQTTSKD 670 Query: 660 HVAVVGENRKLLIFSIDQIPEMSR-GKGVR 688 + V N + ++F + M R +GVR Sbjct: 671 AILVATRNGQGIMFDATDVRPMGRTARGVR 700 >gi|262402399|ref|ZP_06078960.1| DNA gyrase subunit A [Vibrio sp. RC586] gi|262351181|gb|EEZ00314.1| DNA gyrase subunit A [Vibrio sp. RC586] Length = 894 Score = 429 bits (1103), Expect = e-118, Method: Compositional matrix adjust. Identities = 258/646 (39%), Positives = 380/646 (58%), Gaps = 64/646 (9%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + V++ L YL YA+S I RA+PD+RDG KPVHRR++ AM+ +G D+ A+KKSA Sbjct: 8 ITPVNIEDELRSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKKSA 67 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG+IDGDSAAA RYTE RM Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVRM 127 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 +++A +L +D++ VD+ Y+ + P V P+K PNLL NG+SGIAVGMAT+IP HN+ Sbjct: 128 SKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGSSGIAVGMATNIPPHNL 187 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ + LA IDN I+I++L++YI GPDFPT +I R+ I+++Y+ GRG +R++ Sbjct: 188 GEVIDGCLAYIDNEAITIDELMDYIPGPDFPTAALI-SGRKGIIDAYKTGRGKVYMRSKA 246 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFP 315 +E G I+V+EIPYQV K+RLIEKIAEL+ K++ + +RDES +D +RIV+ Sbjct: 247 EIEADKNGKETIIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDGMRIVIEC 306 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 K R ++++ +++ + ++T F +NM L G+ P++ L +LK ++ HRREV+ RR Sbjct: 307 K-RDAVGEVVLNNLYANTQLQTTFGINMVALDNGQ-PKLFNLKEMLKCFVDHRREVVTRR 364 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR------------ 420 + F ++ R IL+GL +A NIDEII +IR+ P K +++R Sbjct: 365 TIFELRKARERAHILEGLALALANIDEIIELIRHAATPAEAKEGLIARGWDLGNVAAMLE 424 Query: 421 ----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458 + LTE Q AIL+LRL L LE +I E LL E Sbjct: 425 RAGTDAARPEWLEPQYGIRDGKYFLTEQQAQAILDLRLHKLTGLEHEKILDEYKQLLEEI 484 Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518 + +L S ++ I E+ ++ FS + RRT E++ A + +I +E Sbjct: 485 AALMHILASTERLMEVIREELEAIRAGFSDA-----RRT---EITAATHDIDMEELIARE 536 Query: 519 PITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570 + V +S+ G+++ + + SA KE D ++ L A+T D ILL ST G Sbjct: 537 DVVVTLSHEGYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFSTRG 596 Query: 571 KAYTLPAGNL-LSGR-GHGEAIQLLIDLNHNQDI-----VTAFVYD 609 K Y + L L+ R G+ I L+ L N+ I VT F D Sbjct: 597 KTYRMKVYQLPLASRTARGKPIVNLLPLEENERITAILPVTEFSED 642 >gi|311070654|ref|YP_003975577.1| DNA gyrase subunit A [Bacillus atrophaeus 1942] gi|310871171|gb|ADP34646.1| DNA gyrase subunit A [Bacillus atrophaeus 1942] Length = 821 Score = 429 bits (1103), Expect = e-118, Method: Compositional matrix adjust. Identities = 232/569 (40%), Positives = 362/569 (63%), Gaps = 22/569 (3%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 V+ +++ + +L YA+S I RA+PD+RDG KPVHRRI++AM+++G+ A+KKSA Sbjct: 9 VREINISQEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKAYKKSA 68 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 RIVGEVIGK HPHGD +VY+S+VR+AQ F RY L+ G GNFG++DGDSAAA RYTEARM Sbjct: 69 RIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARM 128 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 +++A IL+ + +D +D++D Y+ + EPVV PS+FPNLL NG +GIAVGMAT+IP H + Sbjct: 129 SKIAMEILRDITKDTIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQL 188 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 EI + LA+ +N +I+I++L+E+I GPDFPT G I+ R I ++Y GRG +RA+ Sbjct: 189 GEIIDGVLAVSENKDITIQELMEFIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKA 247 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316 +EE G I+VTE+PYQV K+RLIEKIA+L+ K+I + D+RDES + ++ Sbjct: 248 EIEETPSGKERILVTELPYQVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEI 307 Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376 R + +++ +++ + ++T F +N+ L G P+V+ L L +L H++ V+ RR+ Sbjct: 308 RRDANAHVILNNLYKQTALQTSFGINLLALVDGE-PKVLNLKQCLVHYLDHQKVVIRRRT 366 Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVDAILN 433 ++ ++ + R IL+GL IA ++D +I++IRN + ++ +FSLTE Q AIL+ Sbjct: 367 AYELRKAEARAHILEGLRIALDHLDAVISLIRNSQTAEIARNGLIEQFSLTEKQAQAILD 426 Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493 +RL+ L LE +I+ E +L+ ++ +L + ++ I E+ E+KE F+ Sbjct: 427 MRLQRLTGLEREKIEEEYQSLVKLIAELKEILANEEKVLEIIREELTEIKERFND----- 481 Query: 494 RRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALH 544 +RRT E+ A T++ + +IE+E I V +++ G+I RS K + + Sbjct: 482 KRRT---EIVTAGLETIEDEDLIERENIVVTLTHNGYIKRLPASTYRSQKRGGKGVQGMG 538 Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAY 573 D ++ + T D IL S GK Y Sbjct: 539 TNGDDFVEHLISTSTHDTILFFSNKGKVY 567 >gi|229521371|ref|ZP_04410790.1| DNA gyrase subunit A [Vibrio cholerae TM 11079-80] gi|229341469|gb|EEO06472.1| DNA gyrase subunit A [Vibrio cholerae TM 11079-80] Length = 895 Score = 429 bits (1103), Expect = e-118, Method: Compositional matrix adjust. Identities = 258/646 (39%), Positives = 379/646 (58%), Gaps = 64/646 (9%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + V++ L YL YA+S I RA+PD+RDG KPVHRR++ AM+ +G D+ A+KKSA Sbjct: 8 ITPVNIEDELRSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKKSA 67 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG+IDGDSAAA RYTE RM Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVRM 127 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 +++A +L +D++ VD+ Y+ + P V P+K PNLL NG+SGIAVGMAT+IP HN+ Sbjct: 128 SKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGSSGIAVGMATNIPPHNL 187 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ + LA IDN I+I++L++YI GPDFPT +I R+ I+++Y+ GRG +R++ Sbjct: 188 GEVIDGCLAYIDNEAITIDELMDYIPGPDFPTAALI-SGRKGIIDAYKTGRGKVYMRSKA 246 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFP 315 +E G I+V+EIPYQV K+RLIEKIAEL+ K++ + +RDES +D +RIV+ Sbjct: 247 EIETDKNGKETIIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDGMRIVIEC 306 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 K R ++++ +++ + ++T F +NM L G+ P++ L +LK ++ HRREV+ RR Sbjct: 307 K-RDAVGEVVLNNLYANTQLQTTFGINMVALDNGQ-PKLFNLKEMLKCFVDHRREVVTRR 364 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR------------ 420 + F ++ R IL+GL +A NIDEII +IR P K +++R Sbjct: 365 TIFELRKARERAHILEGLALALANIDEIIELIRRAATPAEAKEGLIARGWDLGNVAAMLE 424 Query: 421 ----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458 + LTE Q AIL+LRL L LE +I E LL E Sbjct: 425 RAGTDAARPEWLEPQYGIRDGKYFLTEQQAQAILDLRLHKLTGLEHEKILDEYKQLLEEI 484 Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518 + +L S ++ I E+ ++ FS + RRT E++ A + +I +E Sbjct: 485 AALMHILASTERLMEVIREELEAIRAGFSDA-----RRT---EITAATHDIDMEELIARE 536 Query: 519 PITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570 + V +S+ G+++ + + SA KE D ++ L A+T D ILL ST G Sbjct: 537 DVVVTLSHEGYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFSTRG 596 Query: 571 KAYTLPAGNL-LSGR-GHGEAIQLLIDLNHNQDI-----VTAFVYD 609 K Y + L L+ R G+ I L+ L N+ I VT F D Sbjct: 597 KTYRMKVYQLPLASRTARGKPIVNLLPLEENERITAILPVTEFSED 642 >gi|308184486|ref|YP_003928619.1| DNA gyrase subunit A [Helicobacter pylori SJM180] gi|308060406|gb|ADO02302.1| DNA gyrase subunit A [Helicobacter pylori SJM180] Length = 833 Score = 429 bits (1103), Expect = e-118, Method: Compositional matrix adjust. Identities = 250/626 (39%), Positives = 386/626 (61%), Gaps = 43/626 (6%) Query: 4 DNISNSNTLVE-ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62 DN N++ E +N+ V + ++EE YLAY++S I RA+PD RDG KPVHRRI++AM Sbjct: 3 DNSVQDNSVNETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMH 62 Query: 63 EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122 E+GL A+KKSARIVG+VIGK HPHGD +VYD+LVR+AQ F R L+ GQGNFG+ID Sbjct: 63 ELGLTSKVAYKKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSID 122 Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182 GD+AAA RYTEARMT+ +E IL+ +D+D +DF Y++ EP + PS+ PNLL NG +G Sbjct: 123 GDNAAAMRYTEARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANG 182 Query: 183 IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242 IAVGMATSIP H + EI +A + +++NP ++++LE++ GPDFPTGGII + IVE+ Sbjct: 183 IAVGMATSIPPHRIDEIIDALVHVLENPNAELDEILEFVKGPDFPTGGIIY-GKAGIVEA 241 Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302 Y+ GRG +VRA+ VE+ + IV+ E+P+Q K++L+E+I++L K+I + ++R Sbjct: 242 YKTGRGRVKVRAKVHVEKT-KNKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVR 300 Query: 303 DES-AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361 DES E +R+V+ K ++ ++++ ++ L+ MET F + + + + P++ L +L Sbjct: 301 DESDREGIRVVIELKRDAM-SEIVLNHLYKLTTMETTFSIILLAI-YNKEPKIFTLLELL 358 Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMV 418 +L HR+ ++ RR+ F ++ R IL+G LIA NIDEI+ +I+ P K ++ Sbjct: 359 CLFLNHRKTIIIRRTIFELEKAKARAHILEGYLIALDNIDEIVQLIKTSPSPEAAKNTLM 418 Query: 419 SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE 478 RF+L+E Q AIL +RL+ L LE +IK E NLL + ++ +L S + + E Sbjct: 419 ERFTLSEIQSKAILEMRLQRLTGLERDKIKEEYQNLLELIDDLNGILKSEDRLNEVVKTE 478 Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV 538 + EVKE FS RRT E+ + ++ + +I EP+ V +S++G+++ V Sbjct: 479 LLEVKEQFSSP-----RRT---EIQESYESIDTEDLIANEPMVVSMSHKGYVK-----RV 525 Query: 539 DLSALHFK-------------EGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNL 580 DL A + E D ++ A+T D +L ++ G K Y +P + Sbjct: 526 DLKAYERQNRGGKGKLSGSTYEDDFIENFFVANTHDILLFITNKGQLYHLKVYKIPEASR 585 Query: 581 LSGRGHGEAIQLLIDLNHNQDIVTAF 606 ++ G+AI LI L ++ I+ Sbjct: 586 IA---MGKAIVNLISLAPDEKIMATL 608 >gi|89894291|ref|YP_517778.1| hypothetical protein DSY1545 [Desulfitobacterium hafniense Y51] gi|89333739|dbj|BAE83334.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 808 Score = 429 bits (1103), Expect = e-118, Method: Compositional matrix adjust. Identities = 232/605 (38%), Positives = 364/605 (60%), Gaps = 19/605 (3%) Query: 11 TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70 ++ EEN+ SL L E YL Y+ I +RA+PD+RDG KPVHRRII+AM E+G+ Sbjct: 2 SIPEENITQRSLEEVLPESYLGYSKHVILQRAVPDVRDGLKPVHRRIIYAMDELGMTPDK 61 Query: 71 AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130 + KSAR+VG+ +GK HPHGD S+YD+ VR+AQP+ RYPLI GQGNFG+IDGD AAA R Sbjct: 62 PYSKSARLVGDCMGKYHPHGDSSIYDAAVRMAQPWATRYPLIDGQGNFGSIDGDGAAAMR 121 Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190 YTE RMT +++L+ Q +++D + F+ Y++ + EP+V PS FPNLL NG SGIAVGMA++ Sbjct: 122 YTEMRMTHLSQLMTQDIEKDVIPFKPNYDQREKEPIVLPSPFPNLLVNGGSGIAVGMASN 181 Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250 IP HN++E+ A + IDNP +++E+L+E + GPDFPTGG+I+ S + E+YR GRG Sbjct: 182 IPPHNLREVVAALILQIDNPHVTLEQLMEKVKGPDFPTGGLIIGS-QGFTEAYRSGRGKV 240 Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDV 309 +R + +E G IV+TEIP+QV KS L KI +I + ++RDES E + Sbjct: 241 TMRGKAIIESGKNGKSLIVITEIPFQVSKSTLAAKIEAQSENGKIEGISEVRDESDREGI 300 Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369 R+V+ K + DP +++ ++ + ++ F + V+S P+V+ L I + +L HR+ Sbjct: 301 RLVVECK-KDADPKRILKLLYKYTQLQETFGIINLVISEEGTPRVLGLKEINRSYLQHRK 359 Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTEN 426 EV+ RR+ + + R IL+GL+IA N+DE++ IIR+ P K +++RF +E Sbjct: 360 EVVLRRTEYELAKAKARAHILEGLVIAINNLDEVLQIIRSSKTPALAKAGLITRFEFSEV 419 Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486 Q AIL+++L+ L LE I+ E +L +++S+L + + I E++++ E + Sbjct: 420 QAQAILDMKLQHLTNLELDGIRKEYAEILKLIAELESILADINKVYTIIKHELKQIAEQY 479 Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHS----VDLSA 542 RRT D+ ++P+ V+++ +G+I+ + + + ++ A Sbjct: 480 GDE-----RRTLILPEDVGDEVDYSAFEEPEKPMEVLLTKKGFIKQIPTPTRRSQINAIA 534 Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRG---HGEAIQLLIDLNHN 599 FK+GD L + + D + + +GK Y A L++ G G A+ L L Sbjct: 535 FAFKDGDVLLEHVSCTSKDTLYFFTHNGKYYDAKA-KLVAEAGAKEKGRAVNNLFPLPEE 593 Query: 600 QDIVT 604 + IV Sbjct: 594 ERIVA 598 >gi|256822117|ref|YP_003146080.1| DNA gyrase subunit A [Kangiella koreensis DSM 16069] gi|256795656|gb|ACV26312.1| DNA gyrase, A subunit [Kangiella koreensis DSM 16069] Length = 879 Score = 429 bits (1103), Expect = e-118, Method: Compositional matrix adjust. Identities = 284/790 (35%), Positives = 440/790 (55%), Gaps = 70/790 (8%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 +++ L+ YL YA+S I RA+PD+RDG KPVHRR+++AM+ +G D+ A+KKSAR+V Sbjct: 11 INIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDYNKAYKKSARVV 70 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG+IDGDSAAA RYTE RM ++ Sbjct: 71 GDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVRMDKL 130 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A +L ++++ VDF D Y+ +SEP V P++ PNLL NG+SGIAVGMAT+IP HN+ E+ Sbjct: 131 AHQLLADLEKETVDFEDNYDGSESEPTVLPTRVPNLLINGSSGIAVGMATNIPPHNLTEV 190 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 + LALIDNP+I+I +L+EYI GPDFPT II R I+++Y GRG +R+R VE Sbjct: 191 IDGCLALIDNPDITIPELMEYIKGPDFPTAAII-NGRAGIIDAYHTGRGKIYLRSRSHVE 249 Query: 260 -EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318 + G IVVTE+PYQV K+RLIEKIAEL+ K+I + +RDES +D ++ + Sbjct: 250 TDEKSGKQSIVVTELPYQVNKARLIEKIAELVKDKKIEGITGLRDESDKDGMRMVIELRK 309 Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378 P++++ +++ S M+ F +NM L + P++ L + ++ HRREV+ RR+ F Sbjct: 310 GEVPEVVLNNLYAQSQMQNVFGINMVALDNNQ-PRLFNLKDAIDAFVTHRREVVTRRTIF 368 Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK----------------PVMVSR-- 420 ++ + +L+GL IA NID II +I+ PK M++R Sbjct: 369 ELRKAREKAHVLEGLAIALANIDAIIELIKESPTPKEAKEGLMGRGWEPGQVSTMLARAG 428 Query: 421 -------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKI 461 + L++ Q AIL+LRL L LE +I E +LL E++ Sbjct: 429 TEACRPEELAAEFGFHDGFYKLSDAQAQAILDLRLHKLTGLEHDKILGEYKDLLGLIEEL 488 Query: 462 DSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPIT 521 +L S ++ I E+ EV+E F RR+ + S+ D +I +E + Sbjct: 489 LRILMSTERLLEVIREELEEVRENFGDE-----RRSEILD-SKLDLTIAD--LITEEDVV 540 Query: 522 VVISNRGWIR--SLKSHSVDL------SALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573 V +S+ G+++ +L + SA K+ D ++ L A T D IL S+ GK Y Sbjct: 541 VTLSHEGYVKYQALSEYKAQRRGGRGKSATKMKDEDFIEKLLVASTHDTILCFSSTGKVY 600 Query: 574 TLPAGNLL-SGRG-HGEAIQLLIDLNHNQDIVTAF-VYDSTCKLLVVSSKGNAFIVEES- 629 L L +GRG G+ I ++ L + + I + + + V + N + + S Sbjct: 601 WLKVFELPNAGRGSRGKPIVNVLPLENGERINAILPIREFSEDKFVFMATANGTVKKTSL 660 Query: 630 EIIANTR-KGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKG 686 E + R G L ++ ++++ VV+ G +H+ + + K++ F + M R +G Sbjct: 661 EQFSRPRSNGIIALTIADDDELIGVVETDGSNHIMMFSDAGKVIRFDEANVRGMGRTARG 720 Query: 687 VRLQSYKDGG--ISDVICFKICEGLTWIDSA-GRSYNRSENDLLGWLGKRGGVGSLVPKG 743 VR +G I ++ + LT ++ G+ ++ L G RGG G + + Sbjct: 721 VRGMKLPEGAKVIQMIVAEEDGSVLTATENGYGKRTAMEDHPLRG----RGGQGVISIQM 776 Query: 744 FPRSGKFLSS 753 R+G +S+ Sbjct: 777 SERNGAVVSA 786 >gi|84393089|ref|ZP_00991854.1| DNA gyrase, subunit A [Vibrio splendidus 12B01] gi|84376246|gb|EAP93129.1| DNA gyrase, subunit A [Vibrio splendidus 12B01] Length = 895 Score = 429 bits (1103), Expect = e-118, Method: Compositional matrix adjust. Identities = 249/605 (41%), Positives = 362/605 (59%), Gaps = 57/605 (9%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + V++ L YL YA+S I RA+PD+RDG KPVHRR++ AM+ +G D+ A+KKSA Sbjct: 8 ITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKKSA 67 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD +VY+S+VR+AQPF RY L+ GQGNFG++DGDSAAA RYTE RM Sbjct: 68 RVVGDVIGKYHPHGDSAVYESIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEVRM 127 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 +++A +L +D+D VDF Y+ + P V P+K PNLL NG SGIAVGMAT+IP HN+ Sbjct: 128 SKIAGELLTDLDKDTVDFVPNYDGTEQIPAVLPTKIPNLLVNGASGIAVGMATNIPPHNL 187 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ + LA I+N +I+I++L++YI GPDFPT +I R+ IV++Y+ GRG +R+R Sbjct: 188 GEVVDGCLAFINNEDITIDELMDYIPGPDFPTAALI-SGRKGIVDAYKTGRGKVYMRSRA 246 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFP 315 +E G I+VTEIPYQV K+RLIEKIAEL+ K++ + +RDES +D +RIV+ Sbjct: 247 NIEMEKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIEC 306 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 K R ++++ +++ + ++T F +NM L+ G+ PQ+ + +LK ++ HRREV+ RR Sbjct: 307 K-RDAVGEVVLNNLYSQTQLQTTFGINMVALNNGQ-PQLFNIKDMLKCFVDHRREVVTRR 364 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR------------ 420 + F ++ R IL+ L +A NIDEII +I+N P K +VSR Sbjct: 365 TIFELKKARDRAHILEALSLALANIDEIIELIKNAPTPAEAKVGLVSRGWDLGNVASMLE 424 Query: 421 ----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458 + LTE Q AIL LRL L LE +I E LL E Sbjct: 425 RAGTDAARPDWLEDQYGIRDGQYFLTETQAQAILELRLHRLTGLEHEKILDEYKALLEEI 484 Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518 ++ +L S ++ I E+ V++I+ RRT E++ A + +I +E Sbjct: 485 AELMHILASTERLMEVIREELEAVRDIYGDE-----RRT---EITAAVHDIDMEELIAQE 536 Query: 519 PITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570 + V +SN G+++ + + SA K+ D ++ L A+T D IL ST G Sbjct: 537 DVVVTLSNAGYVKYQILSDYEAQRRGGKGKSATKMKDEDYIERLLVANTHDNILCFSTRG 596 Query: 571 KAYTL 575 K Y L Sbjct: 597 KTYRL 601 >gi|220934707|ref|YP_002513606.1| DNA gyrase, A subunit [Thioalkalivibrio sp. HL-EbGR7] gi|219996017|gb|ACL72619.1| DNA gyrase, A subunit [Thioalkalivibrio sp. HL-EbGR7] Length = 864 Score = 429 bits (1103), Expect = e-118, Method: Compositional matrix adjust. Identities = 288/793 (36%), Positives = 437/793 (55%), Gaps = 77/793 (9%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 V+L + + YL YA+S I RA+PD+RDG KPVHRR+++AM E+G D+ +KKSAR+V Sbjct: 11 VNLEDEMRQSYLDYAMSVIIGRALPDVRDGLKPVHRRVLYAMQELGNDWNKPYKKSARVV 70 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG++DGD+ AA RYTE RM ++ Sbjct: 71 GDVIGKYHPHGDTAVYDTIVRMAQPFSMRYMLVDGQGNFGSVDGDAPAAMRYTEVRMAKL 130 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A +L +D++ VDF D Y+ + EP VFP++ PNLL NG++GIAVGMAT+IP HN++E+ Sbjct: 131 AHQLLADIDKETVDFVDNYDGSEREPSVFPTRLPNLLINGSAGIAVGMATNIPPHNMREV 190 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 +A +ALID+P I I +L+E++ GPDFPT +I I E+Y GRG +RAR VE Sbjct: 191 VDACVALIDDPSIGIPQLMEHLPGPDFPTAAVI-NGATGIHEAYHTGRGRIYLRARSHVE 249 Query: 260 -EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318 + G G +VVTE+PYQV K+RL+EKIAEL+ K++ + ++RDES +D ++ R Sbjct: 250 TDEGSGRQSLVVTELPYQVNKARLLEKIAELVKEKKLEGISELRDESDKDGMRMVIELKR 309 Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378 P++++ +++ + M+ F +NM L G+ P+++ L +L+ +L HRREV+ RR+ + Sbjct: 310 GEVPEVILNNLYQHTQMQNVFGINMVALVDGQ-PRLLDLKQVLEAFLRHRREVVTRRTIY 368 Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV----------------MVSR-- 420 ++ R +L+GL +A NIDE+IA+I+ P M++R Sbjct: 369 DLRKARERAHVLEGLAVALANIDEVIALIKASASPAEAKAGLMGRAWKSGVVDEMLARAG 428 Query: 421 -------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKI 461 + L++ Q AIL+LRL L LE+ ++ SE LL EKI Sbjct: 429 AATSRPEDLDAAFGIHADGYYLSDAQAQAILDLRLHRLTGLEQEKVVSEYKELL---EKI 485 Query: 462 DSLLN---SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518 D LL+ S + I E+ E++E F RRT E SR D TL+ +I +E Sbjct: 486 DDLLDILGSPDRLMRVIRDELLEMREQFGDE-----RRTEIIE-SRLD-LTLED-LITEE 537 Query: 519 PITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570 + V +S+ G+ R+ K SA FK+ D + + T D IL S+ G Sbjct: 538 DVVVTLSHAGYAKYQPVSAYRAQKRGGRGKSATSFKDEDFVDRLVVCSTHDTILCFSSRG 597 Query: 571 KAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEE 628 KAY L L G G+ I L+ L + I + L V ++ V++ Sbjct: 598 KAYWLKVYELPQGSRAARGKPIVNLLPLEEGERINAILPVREYLEDLYVFMSTSSGTVKK 657 Query: 629 SEIIANTR-KGKTFLKVSSEEKMKLVVKVTGD---HVAVVGENRKLLIFSIDQIPEMSRG 684 + ++ +R + + V + +LV D V ++ K + FS +Q+ M R Sbjct: 658 TPLVDFSRPRSNGIIAVDLRDGDQLVDVAITDGSRDVMLLTSAGKAIRFSEEQVRPMGRT 717 Query: 685 ----KGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740 +GVRL +D + +I + EG I + R+ D G RGG G + Sbjct: 718 ACGVRGVRLA--EDQRVISLII--VDEGTVLIATENGYGKRTPPDDFPVHG-RGGQGVIA 772 Query: 741 PKGFPRSGKFLSS 753 + R+G + + Sbjct: 773 IQTGGRNGAVVGA 785 >gi|86148463|ref|ZP_01066753.1| DNA gyrase, subunit A [Vibrio sp. MED222] gi|85833760|gb|EAQ51928.1| DNA gyrase, subunit A [Vibrio sp. MED222] Length = 890 Score = 429 bits (1103), Expect = e-118, Method: Compositional matrix adjust. Identities = 249/605 (41%), Positives = 362/605 (59%), Gaps = 57/605 (9%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + V++ L YL YA+S I RA+PD+RDG KPVHRR++ AM+ +G D+ A+KKSA Sbjct: 8 ITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKKSA 67 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD +VY+S+VR+AQPF RY L+ GQGNFG++DGDSAAA RYTE RM Sbjct: 68 RVVGDVIGKYHPHGDSAVYESIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEVRM 127 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 +++A +L +D+D VDF Y+ + P V P+K PNLL NG SGIAVGMAT+IP HN+ Sbjct: 128 SKIAGELLTDLDKDTVDFVPNYDGTEQIPAVLPTKIPNLLVNGASGIAVGMATNIPPHNL 187 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ + LA I+N +I+I++L++YI GPDFPT +I R+ IV++Y+ GRG +R+R Sbjct: 188 GEVVDGCLAFINNEDITIDELMDYIPGPDFPTAALI-SGRKGIVDAYKTGRGKVYMRSRA 246 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFP 315 +E G I+VTEIPYQV K+RLIEKIAEL+ K++ + +RDES +D +RIV+ Sbjct: 247 EIETEKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIEC 306 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 K R ++++ +++ + ++T F +NM L+ G+ PQ+ + +LK ++ HRREV+ RR Sbjct: 307 K-RDAVGEVVLNNLYSQTQLQTTFGINMVALNNGQ-PQLFNIKDMLKCFVDHRREVVTRR 364 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR------------ 420 + F ++ R IL+ L +A NIDEII +I+N P K +VSR Sbjct: 365 TIFELKKARDRAHILEALSLALANIDEIIELIKNAPTPAEAKVGLVSRGWDLGNVASMLE 424 Query: 421 ----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458 + LTE Q AIL LRL L LE +I E LL E Sbjct: 425 RAGTDAARPDWLEDQYGIRDGQYFLTETQAQAILELRLHRLTGLEHEKILDEYKALLEEI 484 Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518 ++ +L S ++ I E+ V++I+ RRT E++ A + +I +E Sbjct: 485 AELMHILASTERLMEVIREELEAVRDIYGDE-----RRT---EITAAVHDIDMEELIAQE 536 Query: 519 PITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570 + V +SN G+++ + + SA K+ D ++ L A+T D IL ST G Sbjct: 537 DVVVTLSNAGYVKYQILSDYEAQRRGGKGKSATKMKDEDYIERLLVANTHDNILCFSTRG 596 Query: 571 KAYTL 575 K Y L Sbjct: 597 KTYRL 601 >gi|153801315|ref|ZP_01955901.1| DNA gyrase, subunit A [Vibrio cholerae MZO-3] gi|229529662|ref|ZP_04419052.1| DNA gyrase subunit A [Vibrio cholerae 12129(1)] gi|124123140|gb|EAY41883.1| DNA gyrase, subunit A [Vibrio cholerae MZO-3] gi|229333436|gb|EEN98922.1| DNA gyrase subunit A [Vibrio cholerae 12129(1)] Length = 894 Score = 429 bits (1103), Expect = e-118, Method: Compositional matrix adjust. Identities = 258/646 (39%), Positives = 379/646 (58%), Gaps = 64/646 (9%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + V++ L YL YA+S I RA+PD+RDG KPVHRR++ AM+ +G D+ A+KKSA Sbjct: 8 ITPVNIEDELRSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKKSA 67 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG+IDGDSAAA RYTE RM Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVRM 127 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 +++A +L +D++ VD+ Y+ + P V P+K PNLL NG+SGIAVGMAT+IP HN+ Sbjct: 128 SKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGSSGIAVGMATNIPPHNL 187 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ + LA IDN I+I++L++YI GPDFPT +I R+ I+++Y+ GRG +R++ Sbjct: 188 GEVIDGCLAYIDNEAITIDELMDYIPGPDFPTAALI-SGRKGIIDAYKTGRGKVYMRSKA 246 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFP 315 +E G I+V+EIPYQV K+RLIEKIAEL+ K++ + +RDES +D +RIV+ Sbjct: 247 EIETDKNGKETIIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDGMRIVIEC 306 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 K R ++++ +++ + ++T F +NM L G+ P++ L +LK ++ HRREV+ RR Sbjct: 307 K-RDAVGEVVLNNLYANTQLQTTFGINMVALDNGQ-PKLFNLKEMLKCFVDHRREVVTRR 364 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR------------ 420 + F ++ R IL+GL +A NIDEII +IR P K +++R Sbjct: 365 TIFELRKARERAHILEGLALALANIDEIIELIRRAATPAEAKEGLIARGWDLGNVAAMLE 424 Query: 421 ----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458 + LTE Q AIL+LRL L LE +I E LL E Sbjct: 425 RAGTDAARPEWLEPQYGIRDGKYFLTEQQAQAILDLRLHKLTGLEHEKILDEYKQLLEEI 484 Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518 + +L S ++ I E+ ++ FS + RRT E++ A + +I +E Sbjct: 485 AALMHILASTERLMEVIREELEAIRAGFSDA-----RRT---EITAATHDIDMEELIARE 536 Query: 519 PITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570 + V +S+ G+++ + + SA KE D ++ L A+T D ILL ST G Sbjct: 537 DVVVTLSHEGYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFSTRG 596 Query: 571 KAYTLPAGNL-LSGR-GHGEAIQLLIDLNHNQDI-----VTAFVYD 609 K Y + L L+ R G+ I L+ L N+ I VT F D Sbjct: 597 KTYRMKVYQLPLASRTARGKPIVNLLPLEENERITAILPVTEFSED 642 >gi|153827297|ref|ZP_01979964.1| DNA gyrase, subunit A [Vibrio cholerae MZO-2] gi|149738788|gb|EDM53130.1| DNA gyrase, subunit A [Vibrio cholerae MZO-2] Length = 894 Score = 429 bits (1102), Expect = e-117, Method: Compositional matrix adjust. Identities = 258/646 (39%), Positives = 379/646 (58%), Gaps = 64/646 (9%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + V++ L YL YA+S I RA+PD+RDG KPVHRR++ AM+ +G D+ A+KKSA Sbjct: 8 ITPVNIEDELRSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKKSA 67 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG+IDGDSAAA RYTE RM Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVRM 127 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 +++A +L +D++ VD+ Y+ + P V P+K PNLL NG+SGIAVGMAT+IP HN+ Sbjct: 128 SKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGSSGIAVGMATNIPPHNL 187 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ + LA IDN I+I++L++YI GPDFPT +I R+ I+++Y+ GRG +R++ Sbjct: 188 GEVIDGCLAYIDNESITIDELMDYIPGPDFPTAALI-SGRKGIIDAYKTGRGKVYMRSKA 246 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFP 315 +E G I+V+EIPYQV K+RLIEKIAEL+ K++ + +RDES +D +RIV+ Sbjct: 247 EIETDKNGKETIIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDGMRIVIEC 306 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 K R ++++ +++ + ++T F +NM L G+ P++ L +LK ++ HRREV+ RR Sbjct: 307 K-RDAVGEVVLNNLYANTQLQTTFGINMVALDNGQ-PKLFNLKEMLKCFVDHRREVVTRR 364 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR------------ 420 + F ++ R IL+GL +A NIDEII +IR P K +++R Sbjct: 365 TIFELRKARERAHILEGLALALANIDEIIELIRRAATPAEAKEGLIARGWDLGNVAAMLE 424 Query: 421 ----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458 + LTE Q AIL+LRL L LE +I E LL E Sbjct: 425 RAGTDAARPEWLEPQYGIRDGKYFLTEQQAQAILDLRLHKLTGLEHEKILDEYKQLLEEI 484 Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518 + +L S ++ I E+ ++ FS + RRT E++ A + +I +E Sbjct: 485 AALMHILASTERLMEVIREELEAIRAGFSDA-----RRT---EITAATHDIDMEELIARE 536 Query: 519 PITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570 + V +S+ G+++ + + SA KE D ++ L A+T D ILL ST G Sbjct: 537 DVVVTLSHEGYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFSTRG 596 Query: 571 KAYTLPAGNL-LSGR-GHGEAIQLLIDLNHNQDI-----VTAFVYD 609 K Y + L L+ R G+ I L+ L N+ I VT F D Sbjct: 597 KTYRMKVYQLPLASRTARGKPIVNLLPLEENERITAILPVTEFSED 642 >gi|242243250|ref|ZP_04797695.1| DNA gyrase subunit A [Staphylococcus epidermidis W23144] gi|242233199|gb|EES35511.1| DNA gyrase subunit A [Staphylococcus epidermidis W23144] Length = 893 Score = 429 bits (1102), Expect = e-117, Method: Compositional matrix adjust. Identities = 262/694 (37%), Positives = 408/694 (58%), Gaps = 37/694 (5%) Query: 26 LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85 + E +L YA+S I RA+PD+RDG KPVHRRI++ ++E G+ +KKSARIVG+V+GK Sbjct: 18 MRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKSARIVGDVMGK 77 Query: 86 LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145 HPHGD S+Y+++VR+AQ F RYPL+ GQGNFG++DGD AAA RYTEARMT++ +L+ Sbjct: 78 YHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEARMTKITLELLR 137 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 +++D +DF D Y+ + EP V P++FPNLL NG +GIAVGMAT+IP HN+ E+ + L+ Sbjct: 138 DINKDTIDFIDNYDGNEREPSVLPARFPNLLVNGAAGIAVGMATNIPPHNLTEVIDGVLS 197 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265 L NP+I+I +L+E I GPDFPT G+++ + I +Y GRG ++R+R +EE G G Sbjct: 198 LSKNPDITINELMEDIQGPDFPTAGLVL-GKSGIRRAYETGRGSIQMRSRAEIEERGGGR 256 Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA--EDVRIVLFPKNRSLDPD 323 IVVTEIP+QV K+R+IEKIAEL+ K+I + D+RDE++ VR+V+ + + + Sbjct: 257 QRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRVVIDVR-KDANAS 315 Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383 +++ +++ + ++T F +NM L GR P+++ L L +L H++ V+ RR+ + ++ Sbjct: 316 VILNNLYKQTPLQTSFGVNMIALVNGR-PKLINLKEALIHYLEHQKTVVRRRTEYNLKKA 374 Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVDAILNLRLRSLR 440 R IL+GL IA +IDEII IR D K M S RF LTE Q AIL++RLR L Sbjct: 375 RDRAHILEGLRIALDHIDEIITTIRESDTDKIAMASLQERFKLTERQAQAILDMRLRRLT 434 Query: 441 KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500 LE +I+SE + LL ++++ +L + + E+ E+KE F RRT Sbjct: 435 GLERDKIESEYNELLEYIKELEEILADEEVLLQLVRDELTEIKERFGDE-----RRT--- 486 Query: 501 EVSRADKATLQ-QAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSL 551 E+ L+ + +I +E I + +S+ +I RS + ++ + D + Sbjct: 487 EIQLGGLEDLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRSQNRGGRGIQGMNTLDEDFV 546 Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAFV-- 607 + T D +L + G+ Y L + LS + G I I+L +++ I T Sbjct: 547 SQLVTMSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPIINAIELENDETISTMIAVK 606 Query: 608 -YDSTCKLLVVSSKGNAFIVEESEIIANTR---KGKTFLKVSSEEKMKLVVKVTGDHVAV 663 +S LV ++K IV+ S + +R GK + ++++ V TG+ + Sbjct: 607 DLESEEDYLVFATKQG--IVKRSSLSNFSRINKNGKIAINFKEDDELIAVRLTTGNEDIL 664 Query: 664 VGENRKLLI-FSIDQIPEMSR-GKGVRLQSYKDG 695 +G LI FS + + R GV+ S ++G Sbjct: 665 IGTAHASLIRFSESTLRPLGRTAAGVKGISLREG 698 >gi|315586626|gb|ADU41007.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Helicobacter pylori 35A] Length = 828 Score = 429 bits (1102), Expect = e-117, Method: Compositional matrix adjust. Identities = 250/625 (40%), Positives = 384/625 (61%), Gaps = 46/625 (7%) Query: 4 DNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63 DN+ N +N+ V + ++EE YLAY++S I RA+PD RDG KPVHRRI++AM E Sbjct: 3 DNLINET----KNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHE 58 Query: 64 MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123 +GL A+KKSARIVG+VIGK HPHGD +VYD+LVR+AQ F R L+ GQGNFG+IDG Sbjct: 59 LGLTSKVAYKKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSIDG 118 Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183 D+AAA RYTEARMT+ +E IL+ +D+D +DF Y++ EP + PS+ PNLL NG +GI Sbjct: 119 DNAAAMRYTEARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGI 178 Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243 AVGMATSIP H + EI +A + +++NP ++K+LE++ GPDFPTGGII + I+E+Y Sbjct: 179 AVGMATSIPPHRIDEIIDALVHVLENPNAGLDKILEFVKGPDFPTGGIIY-GKAGIIEAY 237 Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303 + GRG +VRA+ VE+ + IV+ E+P+Q K++L+E+I++L K+I + ++RD Sbjct: 238 KTGRGRVKVRAKVHVEKT-KNKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRD 296 Query: 304 ES-AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362 ES E +R+V+ K ++ ++++ ++ L+ MET F + + + + P++ L +L+ Sbjct: 297 ESDREGIRVVIELKRDAM-SEIVLNHLYKLTTMETTFSIILLAI-YNKEPKIFTLLELLR 354 Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVS 419 +L HR+ ++ RR+ F ++ R IL+G LIA NIDEI+ +I+ P K ++ Sbjct: 355 LFLNHRKTIIIRRTIFELEKAKARAHILEGYLIALDNIDEIVQLIKTSQSPEAAKNALME 414 Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479 RF+L+E Q AIL +RL+ L LE +IK E NLL + ++ +L S + + E+ Sbjct: 415 RFTLSEIQSKAILEMRLQRLTGLEREKIKEEYQNLLELIDDLNGILKSEDRLNEVVKTEL 474 Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539 EVKE FS +RRT E+ A + + +I EP+ V +S +G+++ VD Sbjct: 475 LEVKEQFS-----SQRRT---EIQEAYENIDIEDLIANEPMVVSMSYKGYVK-----RVD 521 Query: 540 LSALHFK-------------EGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLL 581 L A + E D ++ A+T D +L ++ G K Y +P + + Sbjct: 522 LKAYERQNRGGKGKLSGNTYEDDFIENFFVANTHDILLFITNKGQLYHLKVYKIPEASRI 581 Query: 582 SGRGHGEAIQLLIDLNHNQDIVTAF 606 + G+AI LI L ++ I+ Sbjct: 582 A---MGKAIVNLISLAPDEKIMATL 603 >gi|315168225|gb|EFU12242.1| DNA gyrase, A subunit [Enterococcus faecalis TX1341] Length = 833 Score = 429 bits (1102), Expect = e-117, Method: Compositional matrix adjust. Identities = 268/771 (34%), Positives = 444/771 (57%), Gaps = 57/771 (7%) Query: 13 VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72 ++EN++ V+L ++E ++ YA+S I RA+PD+RDG KPVHRRI++ M+E+G+ Sbjct: 5 IKENIQDVNLTSEMKESFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 64 Query: 73 KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132 KKSARIVG+V+GK HPHGD ++Y+S+VR+AQPF R L+ G GNFG++DGD AAA RYT Sbjct: 65 KKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRAMLVDGHGNFGSVDGDGAAAMRYT 124 Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192 EARM+++A +L+ ++++ VDF+ Y++ + EPVV P++FPNLL NGT+GIAVGMAT+IP Sbjct: 125 EARMSKIALEMLRDINKNTVDFQGNYDDSEQEPVVLPARFPNLLVNGTTGIAVGMATNIP 184 Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252 HN+ E+ +A L+DNP+++ +L+E + GPDFPTGG+++ + I +Y G+G V Sbjct: 185 PHNLSEVIDATSLLMDNPDVTTNELMEVLPGPDFPTGGLVM-GKSGIRRAYETGKGSITV 243 Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRI 311 RA+ + E+ G I+VTE+PY V K++LIE+I+EL KRI + D+RDES+ E +RI Sbjct: 244 RAKVELTEMPNGKERILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMRI 303 Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371 V+ + R + +++ +++ ++ ++T F NM + G VP+++ L IL+ ++ H++EV Sbjct: 304 VIDVR-RDVSASVVLNNLYKMTALQTSFGFNMLAIEKG-VPKILSLKRILENYVEHQKEV 361 Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQV 428 + RR+ F + R IL+GL IA +IDEIIAIIR ++D+ K ++ RF ++ Q Sbjct: 362 ITRRTIFDKNKAEARAHILEGLRIALDHIDEIIAIIRGSQSDDEAKATLIERFEFSDRQA 421 Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488 AIL++RLR L LE +I++E LL ++ +L ++ I E+ +V+ F Sbjct: 422 QAILDMRLRRLTGLERDKIENEYQELLKFIADLEDILARPERVIEIIKTELNDVRTKFGD 481 Query: 489 STDLGRRRTTFC--EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV-------- 538 + RRT EV + + +IE+E + + ++N G+I+ + + Sbjct: 482 A-----RRTELLVGEVL----SLEDEDLIEEEEVVITLTNNGYIKRMANSEFRAQRRGGR 532 Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY---------------TLPAGNLLSG 583 + + + D +K + T D +L + GK Y +P NLL G Sbjct: 533 GVQGMGVHDDDFVKNLVSCSTHDTLLFFTNTGKVYRAKGYEIPEYGRTAKGIPVINLL-G 591 Query: 584 RGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLK 643 E IQ +I + + +++ +T K V + AF S I +N G + Sbjct: 592 IDSTEKIQAIISVEGKAE-AGKYLFFTTLKGTVKRTAVTAF----SNIRSN---GLIAIS 643 Query: 644 VSSEEKMKLVVKVTGDHVAVVGENRKL-LIFSIDQIPEMSRG----KGVRLQSYKDGGIS 698 + ++++ VV G+ ++G + + F + + +M R +G+RL+ D + Sbjct: 644 LKEDDELVNVVTTNGNQKMIIGTHAGYSVTFDENTVRDMGRTASGVRGIRLRE-NDYVVG 702 Query: 699 DVICFKICEGLTWIDSA-GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG 748 I + E L ++ G+ SE + G GK ++ K P +G Sbjct: 703 AAILDENKEVLVITENGYGKRTKASEYPVKGRGGKGIKTANITEKNGPLAG 753 >gi|154253489|ref|YP_001414313.1| DNA gyrase subunit A [Parvibaculum lavamentivorans DS-1] gi|154157439|gb|ABS64656.1| DNA gyrase, A subunit [Parvibaculum lavamentivorans DS-1] Length = 965 Score = 429 bits (1102), Expect = e-117, Method: Compositional matrix adjust. Identities = 260/756 (34%), Positives = 407/756 (53%), Gaps = 61/756 (8%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 E +V +++ + YL YA+S I RA+PD RDG KPVHRRI+ +M+E G D+ ++ Sbjct: 65 ERDVAPIAIEDEMRSSYLDYAMSVIVSRALPDARDGLKPVHRRILFSMNENGYDWNKPYR 124 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSAR+VG+VIGK HPHGDQS+YD+LVR+AQ F R PL+ GQGNFG++DGD AA RYTE Sbjct: 125 KSARVVGDVIGKYHPHGDQSIYDALVRMAQDFSMRLPLLDGQGNFGSVDGDPPAAMRYTE 184 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 RM + A +L +D++ +DF+D Y+ + EPVV P++ PNLL NG +GIAVGMAT+IP Sbjct: 185 VRMAKTAHALLNDIDKNTIDFKDNYDGTEREPVVLPAELPNLLVNGANGIAVGMATNIPP 244 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E+ +A +ALIDNP+I+I++L+E++ PDFPTGGI++ R+ +Y G+G VR Sbjct: 245 HNLGEVIDACIALIDNPDITIDELIEHVPAPDFPTGGIML-GRQGARLAYHTGKGSVVVR 303 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313 R EEV + I+++EIPYQV K+ ++EKIA+L+ KRI + D+RDES + V+ Sbjct: 304 GRVEFEEVRKDRQAIIISEIPYQVNKASMVEKIADLVREKRIEGIADLRDESDRNGMRVV 363 Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373 R PD+++ ++ S ++ F NM L GR P++M L L+ ++A R EV+ Sbjct: 364 VELRRDAVPDVVLNQLYRFSPLQQSFGCNMLALDHGR-PELMNLKQFLEIFVAFREEVIS 422 Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFS----------- 422 RR+ F + R +L GL IA NIDE+I +IR P S + Sbjct: 423 RRTKFELNKARDRAHVLVGLAIAVANIDEVIKLIRTAPDPASARESLMARDWPARDIAPL 482 Query: 423 ------------------LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSL 464 ++E Q AIL LRL+ L L +I EL L E S+ Sbjct: 483 IALIDDPRHQLREDGTIRMSEEQARAILELRLQRLTALGRDEIGDELKGLGERIEDYLSI 542 Query: 465 LNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVI 524 L S + + + E+ +K F+ RRT E++ ++ + +I++E + V + Sbjct: 543 LRSRARVLDIMRTELTAIKAEFATP-----RRT---EIAESESDFEDEDLIQREDMVVTV 594 Query: 525 SNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLP 576 S++G+I R+ + S + K+ D + A+T +L S+ G Y L Sbjct: 595 SHQGYIKRVPLSTYRAQRRGGKGRSGMSTKDEDFVTRLFVANTHTPMLFFSSTGMVYKLK 654 Query: 577 AGNLL--SGRGHGEAIQLLIDLNHNQDIVTAF-------VYDSTCKLLVVSSKGNAFIVE 627 L + + G+A+ ++ L+H + I T +DS ++ + KG+ + Sbjct: 655 VWRLPQSTPQARGKAMINILPLDHGEYITTVMPMPEDEASWDS-LHVMFATRKGSVRRNK 713 Query: 628 ESEIIANTRKGKTFLKVSSEEKMKLVVKVT----GDHVAVVGENRKLLIFSIDQIPEMSR 683 S+ + R GK +K ++ +V V D V + N + + F + ++ S Sbjct: 714 LSDFVQINRNGKIAMKFEGDDADDAIVGVQICTEEDDVLLTAANGRCVRFPVTEVRVFSS 773 Query: 684 GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719 K ++ + G +I I + + R+Y Sbjct: 774 RKSTGVRGIRLGDDDKLIAMSIMRHVDVTPAEARAY 809 >gi|254291709|ref|ZP_04962496.1| DNA gyrase, subunit A [Vibrio cholerae AM-19226] gi|150422393|gb|EDN14353.1| DNA gyrase, subunit A [Vibrio cholerae AM-19226] Length = 894 Score = 429 bits (1102), Expect = e-117, Method: Compositional matrix adjust. Identities = 258/646 (39%), Positives = 379/646 (58%), Gaps = 64/646 (9%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + V++ L YL YA+S I RA+PD+RDG KPVHRR++ AM+ +G D+ A+KKSA Sbjct: 8 ITPVNIEDELRSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKKSA 67 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG+IDGDSAAA RYTE RM Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVRM 127 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 +++A +L +D++ VD+ Y+ + P V P+K PNLL NG+SGIAVGMAT+IP HN+ Sbjct: 128 SKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGSSGIAVGMATNIPPHNL 187 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ + LA IDN I+I++L++YI GPDFPT +I R+ I+++Y+ GRG +R++ Sbjct: 188 GEVIDGCLAYIDNEAITIDELMDYIPGPDFPTAALI-SGRKGIIDAYKTGRGKVYMRSKA 246 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFP 315 +E G I+V+EIPYQV K+RLIEKIAEL+ K++ + +RDES +D +RIV+ Sbjct: 247 EIETDKNGKETIIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDGMRIVIEC 306 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 K R ++++ +++ + ++T F +NM L G+ P++ L +LK ++ HRREV+ RR Sbjct: 307 K-RDAVGEVVLNNLYANTQLQTTFGINMVALDNGQ-PKLFNLKEMLKCFVDHRREVVTRR 364 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR------------ 420 + F ++ R IL+GL +A NIDEII +IR P K +++R Sbjct: 365 TIFELRKARERAHILEGLALALANIDEIIELIRRAATPAEAKEGLIARGWDLGNVAAMLE 424 Query: 421 ----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458 + LTE Q AIL+LRL L LE +I E LL E Sbjct: 425 RAGTDAARPEWLEPQYGIRDGKYLLTEQQAQAILDLRLHKLTGLEHEKILDEYKQLLEEI 484 Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518 + +L S ++ I E+ ++ FS + RRT E++ A + +I +E Sbjct: 485 AALMHILASTERLMEVIREELEAIRAGFSDA-----RRT---EITAATHDIDMEELIARE 536 Query: 519 PITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570 + V +S+ G+++ + + SA KE D ++ L A+T D ILL ST G Sbjct: 537 DVVVTLSHEGYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFSTRG 596 Query: 571 KAYTLPAGNL-LSGR-GHGEAIQLLIDLNHNQDI-----VTAFVYD 609 K Y + L L+ R G+ I L+ L N+ I VT F D Sbjct: 597 KTYRMKVYQLPLASRTARGKPIVNLLPLEENERITAILPVTEFSED 642 >gi|313894729|ref|ZP_07828290.1| DNA gyrase, A subunit [Selenomonas sp. oral taxon 137 str. F0430] gi|312976638|gb|EFR42092.1| DNA gyrase, A subunit [Selenomonas sp. oral taxon 137 str. F0430] Length = 815 Score = 429 bits (1102), Expect = e-117, Method: Compositional matrix adjust. Identities = 276/723 (38%), Positives = 411/723 (56%), Gaps = 52/723 (7%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 E V V+L ++ Y+ YA+S I RA+PD+RDG KPVHRRI++AM G+ +K Sbjct: 7 EGRVVPVNLEHEMKNSYIDYAMSVIVARALPDVRDGLKPVHRRILYAMQGSGMTSTKPYK 66 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSARIVGEV+GK HPHGD SVYD++VR+AQ F RY L G GNFG++DGDSAAA RYTE Sbjct: 67 KSARIVGEVLGKYHPHGDSSVYDAIVRMAQDFSMRYMLADGHGNFGSVDGDSAAAMRYTE 126 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 RM++++EL+L+ +D++ VDF D Y+ + EP V P+KFP LL NGT+GIAVGMAT+IP Sbjct: 127 VRMSKISELMLRDIDKETVDFTDNYDGSEKEPTVLPAKFPQLLVNGTAGIAVGMATNIPP 186 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E+ L LIDNP+ ++E+L+ I GPDFPT G+I+ + E I ++Y GRG ++R Sbjct: 187 HNMTEVINGTLMLIDNPDTTVEELMGVIKGPDFPTAGLILGT-EEIRKAYTTGRGVIKMR 245 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313 AR +E + G I+VTE+PYQV K+RLIEKIAEL+ K+I + D+RDES ++ Sbjct: 246 ARAHIETMSNGKPRIIVTELPYQVNKARLIEKIAELVRDKQIDGITDLRDESDRSGMRIV 305 Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373 R P++++ ++ + ++ F + M L G+ P +M L +L +++H+ V+ Sbjct: 306 IELRRDSAPNVILNQLYKHTQLQDSFGVIMLALVDGQ-PVIMNLRSVLGHYISHQETVIT 364 Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAII---RNEDKPKPVMVSRFSLTENQVDA 430 RR+ + + + R IL+GL IA ++D +I I R D + ++ F LTE Q A Sbjct: 365 RRTQYELAKAEARAHILEGLTIALDHLDAVITTIRESRTADIARTALMEGFKLTEKQAQA 424 Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490 IL+LRL+ L LE +I+ E +LA E+ S+L + I E+ EV++ K Sbjct: 425 ILDLRLQRLTGLEREKIEQEYQEVLAAIEEFKSILADRNKVLAIIKNELIEVRD---KYG 481 Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSVDLSA 542 D R TF + S D L I +E + V ++ +I+ + + V + Sbjct: 482 DERRTEITF-DASEMDIKDL----IAEEDVVVTLTMSNYIKRIPLDTYRRQRRGGVGVKG 536 Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEAIQLLIDLNHNQ 600 + KE D + L T IL + G+A+ L A + SGR G AI L+ + ++ Sbjct: 537 MGTKETDVVSDLLITTTHHEILFFTNRGRAFVLKAYEIPESGRAAKGTAIVNLLAVEADE 596 Query: 601 DIVTAFVYDSTCK----LLVVSSKGNAFIVEESEI--IANTRKGKTFLKVSSEEKMKLV- 653 I TA + K L + + KG +V+++ + AN RK V+ +E +L+ Sbjct: 597 RI-TAVIQVREFKPDRFLFLGTRKG---VVKKTPLAEFANIRKSG-LRAVNLDEDDELIG 651 Query: 654 VKVTGDHVAVVGENR--------KLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFK 704 VK T GENR K + F D + M R +GVR + DG +V+ Sbjct: 652 VKFTD------GENRIMLGTRLGKAITFPEDGVRSMGRIARGVRGITLSDG--DEVVAMD 703 Query: 705 ICE 707 I + Sbjct: 704 ILK 706 >gi|320531050|ref|ZP_08032080.1| DNA gyrase, A subunit [Selenomonas artemidis F0399] gi|320136716|gb|EFW28668.1| DNA gyrase, A subunit [Selenomonas artemidis F0399] Length = 824 Score = 429 bits (1102), Expect = e-117, Method: Compositional matrix adjust. Identities = 276/723 (38%), Positives = 412/723 (56%), Gaps = 52/723 (7%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 E V V+L ++ Y+ YA+S I RA+PD+RDG KPVHRRI++AM G+ +K Sbjct: 16 EGRVVPVNLEHEMKNSYIDYAMSVIVARALPDVRDGLKPVHRRILYAMQGSGMTSTKPYK 75 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSARIVGEV+GK HPHGD SVYD++VR+AQ F RY L G GNFG++DGDSAAA RYTE Sbjct: 76 KSARIVGEVLGKYHPHGDSSVYDAIVRMAQDFSMRYMLADGHGNFGSVDGDSAAAMRYTE 135 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 RM++++EL+L+ +D++ VDF D Y+ + EP+V P+KFP LL NGT+GIAVGMAT+IP Sbjct: 136 VRMSKISELMLRDIDKETVDFTDNYDGSEKEPIVLPAKFPQLLVNGTAGIAVGMATNIPP 195 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E+ L LIDNP+ ++E+L+ I GPDFPT G+I+ + E I ++Y GRG ++R Sbjct: 196 HNMTEVINGTLMLIDNPDTTVEELMGVIKGPDFPTAGLILGT-EEIRKAYTTGRGVIKMR 254 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313 AR +E + G I+VTE+PYQV K+RLIEKIAEL+ K+I + D+RDES ++ Sbjct: 255 ARAHIETMSNGKPRIIVTELPYQVNKARLIEKIAELVRDKQIDGITDLRDESDRSGMRIV 314 Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373 R P++++ ++ + ++ F + M L G+ P +M L +L +++H+ V+ Sbjct: 315 IELRRDSAPNVILNQLYKHTQLQDSFGVIMLALVDGQ-PVIMNLRSVLGHYISHQETVIT 373 Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAII---RNEDKPKPVMVSRFSLTENQVDA 430 RR+ + + + R IL+GL IA ++D +I I R D + ++ F LTE Q A Sbjct: 374 RRTQYELAKAEARAHILEGLTIALDHLDAVITTIRESRTADIARTALMEGFKLTEKQAQA 433 Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490 IL+LRL+ L LE +I+ E +LA E+ S+L + I E+ EV++ K Sbjct: 434 ILDLRLQRLTGLEREKIEQEYQEVLAAIEEFKSILADRNKVLAIIKNELIEVRD---KYG 490 Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSVDLSA 542 D R TF + S D L I +E + V ++ +I+ + + V + Sbjct: 491 DERRTEITF-DASEMDIKDL----IAEEDVVVTLTMSNYIKRIPLDTYRRQRRGGVGVKG 545 Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEAIQLLIDLNHNQ 600 + KE D + L T IL + G+A+ L A + SGR G AI L+ + ++ Sbjct: 546 MGTKETDIVSDLLITTTHHEILFFTNRGRAFVLKAYEIPESGRAAKGTAIVNLLAVEADE 605 Query: 601 DIVTAFVYDSTCK----LLVVSSKGNAFIVEESEI--IANTRKGKTFLKVSSEEKMKLV- 653 I TA + K L + + KG +V+++ + AN RK V+ +E +L+ Sbjct: 606 RI-TAVIQVREFKPDRFLFLGTRKG---VVKKTPLAEFANIRKSG-LRAVNLDEDDELIG 660 Query: 654 VKVTGDHVAVVGENR--------KLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFK 704 VK T GENR K + F D + M R +GVR + DG +V+ Sbjct: 661 VKFTD------GENRIMLGTRHGKAITFPEDGVRSMGRIARGVRGITLSDG--DEVVAMD 712 Query: 705 ICE 707 I + Sbjct: 713 ILK 715 >gi|229511173|ref|ZP_04400652.1| DNA gyrase subunit A [Vibrio cholerae B33] gi|229351138|gb|EEO16079.1| DNA gyrase subunit A [Vibrio cholerae B33] Length = 894 Score = 429 bits (1102), Expect = e-117, Method: Compositional matrix adjust. Identities = 258/646 (39%), Positives = 379/646 (58%), Gaps = 64/646 (9%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + V++ L YL YA+S I RA+PD+RDG KPVHRR++ AM+ +G D+ A+KKSA Sbjct: 8 ITPVNIEDELRSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKKSA 67 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD++VYD++VR+AQPF RY L+ GQGNFG+IDGDSAAA RYTE RM Sbjct: 68 RVVGDVIGKYHPHGDRAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVRM 127 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 +++A +L +D++ VD+ Y+ + P V P+K PNLL NG SGIAVGMAT+IP HN+ Sbjct: 128 SKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGASGIAVGMATNIPPHNL 187 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ + LA IDN I+I++L++YI GPDFPT +I R+ I+++Y+ GRG +R++ Sbjct: 188 GEVIDGCLAYIDNEAITIDELMDYIPGPDFPTAALI-SGRKGIIDAYKTGRGKVYMRSKA 246 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFP 315 +E G I+V+EIPYQV K+RLIEKIAEL+ K++ + +RDES +D +RIV+ Sbjct: 247 EIETDKNGKETIIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDGMRIVIEC 306 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 K R ++++ +++ + ++T F +NM L G+ P++ L +LK ++ HRREV+ RR Sbjct: 307 K-RDAVGEVVLNNLYANTQLQTTFGINMVALDNGQ-PKLFNLKEMLKCFVDHRREVVTRR 364 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR------------ 420 + F ++ R IL+GL +A NIDEII +IR P K +++R Sbjct: 365 TIFELRKARERAHILEGLALALANIDEIIELIRRAATPAEAKEGLIARGWDLGNVAAMLE 424 Query: 421 ----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458 + LTE Q AIL+LRL L LE +I E LL E Sbjct: 425 RAGTDAARPEWLEPQYGIRDGKYFLTEQQAQAILDLRLHKLTGLEHEKILDEYKQLLEEI 484 Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518 + +L S ++ I E+ ++ FS + RRT E++ A + +I +E Sbjct: 485 AALMHILASTERLMEVIREELEAIRAGFSDA-----RRT---EITAATHDIDMEELIARE 536 Query: 519 PITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570 + V +S+ G+++ + + SA KE D ++ L A+T D ILL ST G Sbjct: 537 DVVVTLSHEGYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFSTRG 596 Query: 571 KAYTLPAGNL-LSGR-GHGEAIQLLIDLNHNQDI-----VTAFVYD 609 K Y + L L+ R G+ I L+ L N+ I VT F D Sbjct: 597 KTYRMKVYQLPLASRTARGKPIVNLLPLEENERITAILPVTEFSED 642 >gi|15611708|ref|NP_223359.1| DNA gyrase subunit A [Helicobacter pylori J99] gi|9789773|sp|Q9ZLD9|GYRA_HELPJ RecName: Full=DNA gyrase subunit A gi|4155194|gb|AAD06219.1| DNA GYRASE SUBUNIT A [Helicobacter pylori J99] Length = 828 Score = 429 bits (1102), Expect = e-117, Method: Compositional matrix adjust. Identities = 249/614 (40%), Positives = 378/614 (61%), Gaps = 42/614 (6%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 +N+ V + ++EE YLAY++S I RA+PD RDG KPVHRRI++AM E+GL A+KK Sbjct: 10 KNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHELGLTSKVAYKK 69 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 SARIVG+VIGK HPHGD +VYD+LVR+AQ F R L+ GQGNFG+IDGD+AAA RYTEA Sbjct: 70 SARIVGDVIGKYHPHGDTAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDNAAAMRYTEA 129 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 RMT+ +E IL+ +D+D +DF Y++ EP + PS+ PNLL NG +GIAVGMATSIP H Sbjct: 130 RMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGIAVGMATSIPPH 189 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 + EI +A ++ NP ++K+LE++ GPDFPTGGII + IVE+Y+ GRG +VRA Sbjct: 190 RIDEIIDALAHVLGNPNAELDKILEFVKGPDFPTGGIIY-GKAGIVEAYKTGRGRVKVRA 248 Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVL 313 + VE+ + IV+ E+P+Q K++L+E+I++L K+I + ++RDES E +R+V+ Sbjct: 249 KVHVEKT-KNKEIIVLGEMPFQTNKAKLVEQISDLAREKQIEGISEVRDESDREGIRVVI 307 Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373 K ++ ++++ ++ L+ MET F + + + + P++ L +L+ +L HR+ ++ Sbjct: 308 ELKRDAM-SEIVLNHLYKLTTMETTFSIILLAI-YNKEPKIFTLLELLRLFLNHRKTIII 365 Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVDA 430 RR+ F ++ R IL+G LIA NIDEI+ +I+ P K ++ RFSL+E Q A Sbjct: 366 RRTIFELEKAKARAHILEGYLIALDNIDEIVRLIKTSPSPEAAKNALIERFSLSEIQSKA 425 Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490 IL +RL+ L LE +IK E NLL + ++ +L S + + E+ EVKE FS Sbjct: 426 ILEMRLQRLTGLERDKIKEEYQNLLELIDDLNGILKSEDRLNEVVKTELLEVKEQFSSP- 484 Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK---- 546 RRT E+ + ++ + +I EP+ V +S +G+++ VDL A + Sbjct: 485 ----RRT---EIQESYESIDTEDLIANEPMVVSMSYKGYVK-----RVDLKAYERQNRGG 532 Query: 547 ---------EGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQL 592 E D ++ A+T D +L ++ G K Y +P + ++ G+AI Sbjct: 533 KGKLSGSTYEDDFIENFFVANTHDILLFITNKGQLYHLKVYKIPEASRIA---MGKAIVN 589 Query: 593 LIDLNHNQDIVTAF 606 LI L N+ I+ Sbjct: 590 LISLAPNEKIMATL 603 >gi|182416729|ref|ZP_02948128.1| DNA gyrase, A subunit [Clostridium butyricum 5521] gi|182379386|gb|EDT76881.1| DNA gyrase, A subunit [Clostridium butyricum 5521] Length = 835 Score = 429 bits (1102), Expect = e-117, Method: Compositional matrix adjust. Identities = 276/764 (36%), Positives = 439/764 (57%), Gaps = 42/764 (5%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 E V V + +++ Y+ YA+S I RA+PD+RDG KPVHRRI++++ +GL ++ Sbjct: 6 EGKVIPVDINHEMKKCYIDYAMSVIVGRALPDVRDGLKPVHRRILYSLQGLGLTPEKGYR 65 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 K ARIVGEV+GK HPHGD SVYD+LVR+AQ F RY L+ G GNFG++DGDSAAA RYTE Sbjct: 66 KCARIVGEVLGKYHPHGDSSVYDALVRMAQDFSMRYMLVDGHGNFGSVDGDSAAAMRYTE 125 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 A+M ++A +L+ ++++ VDF ++ E+ EPVV PS+FPNLL NG+SGIAVGMAT+IP Sbjct: 126 AKMNKIAVEMLRDINKNTVDFMPNFDGEEQEPVVLPSRFPNLLVNGSSGIAVGMATNIPP 185 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ EI + + LIDNPE+++ L+ I GPDFPTG I+ + I +Y GRG VR Sbjct: 186 HNLGEIIDGTIMLIDNPELTVLDLMTKIQGPDFPTGATIM-GKAGIRAAYETGRGKIVVR 244 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIV 312 A +EE G IVVTEIPYQV K++LIE IA+L+ K+I + D+RDES D +RIV Sbjct: 245 ADAEIEE-ENGRHKIVVTEIPYQVNKAKLIENIADLVKDKKITGISDLRDESDRDGMRIV 303 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 + K R +P++++ ++ + ++ F + M L + P+V+ + IL ++ +++EV+ Sbjct: 304 VELK-RDANPNVVLNLLYKHTKLQDSFGVIMLAL-VNNEPRVLNIKEILSNYIDYQKEVI 361 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVD 429 RR+ F + + R IL+GL IA NIDE+I+IIR+ K ++ +F+L++ Q Sbjct: 362 TRRTVFELNKAEARAHILEGLRIALDNIDEVISIIRHSKTAEIAKNTLMEKFALSDKQAT 421 Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489 AIL +RLR L LE +I+ E L+ + E + S+L S ++ I E+ ++K +S Sbjct: 422 AILEMRLRRLTGLEREKIEEEYAELMKQIEYLKSILASEEKLLGVIKDELSDIKAKYSDE 481 Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD--------LS 541 RRT +V ++ ++ +I++E + + ++N G+I+ + + + + Sbjct: 482 -----RRTKIEKV--VNEIDIED-LIQEEDVVITLTNSGYIKRISADTYSAQRRGGKGIQ 533 Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEAIQLLIDLNHN 599 A+ KE D ++ + T +L + G+ Y L A + +GR G + LI + + Sbjct: 534 AMTTKEDDFVEHVMITSTHSDVLFFTNRGRVYKLRAYEIPDAGRQAKGTNVINLIAIEPD 593 Query: 600 QDIVTAFVYDSTCK--LLVVSSKGNAFIVEESEI--IANTRK-GKTFLKVSSEEKMKLVV 654 + I T K L +++K IV+++ I N RK G L + +++ V Sbjct: 594 EKIQTVLTVSDGKKEGFLFMATKNG--IVKKTHISEFKNLRKNGLIALSLKDNDELLKVK 651 Query: 655 KVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKIC---EGL 709 GD ++ +V +N + F+ + M R GV+ + KD ++ +C I E L Sbjct: 652 NTYGDANIMIVTQNGYAVRFNEKNVRAMGRTASGVKAINLKDDDVA--VCMDIAVDGEEL 709 Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753 I G ++ + RGGVG + K ++GK + Sbjct: 710 LVISENGFGKRTPVSEY--KVQNRGGVGLITYKISEKTGKLTGA 751 >gi|116754691|ref|YP_843809.1| DNA gyrase, A subunit [Methanosaeta thermophila PT] gi|116666142|gb|ABK15169.1| DNA gyrase subunit A [Methanosaeta thermophila PT] Length = 796 Score = 429 bits (1102), Expect = e-117, Method: Compositional matrix adjust. Identities = 244/635 (38%), Positives = 386/635 (60%), Gaps = 40/635 (6%) Query: 26 LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85 ++ Y+ YA+S I RA+PD+RDG KPVHRRI++AM E G+ F +KKSARIVG+V+GK Sbjct: 12 MKSSYIDYAMSVIVGRALPDVRDGLKPVHRRILYAMYEQGVTFDQPYKKSARIVGDVMGK 71 Query: 86 LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145 HPHGD ++YD++VR+AQ F RY LI GQGNFG++DGD AA RYTE R++++A +L Sbjct: 72 YHPHGDVAIYDTMVRMAQDFSMRYTLIDGQGNFGSVDGDPPAAMRYTEVRLSKIAGEMLA 131 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 +++D VDF Y+ EP V PS+ PNLL NG++GIAVGMAT+IP HN++E+ A + Sbjct: 132 DIEKDTVDFVPNYDGSLKEPTVLPSRLPNLLVNGSTGIAVGMATNIPPHNLREVVYALIH 191 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265 LI+NP+ S+ L+ +I GPDFPTGG IV R I +Y GRG +RAR +EE RGS Sbjct: 192 LIENPDASVTDLMNFIRGPDFPTGGYIV-GRSGIESAYSTGRGTITIRARSEIEEGRRGS 250 Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFPKNRSLDPDL 324 I+ TE+PYQV K++++E IAEL+ A R+ + +IRDES E +R+V+ K + ++P + Sbjct: 251 R-IIFTELPYQVNKAKVVEDIAELVKAGRVDGISEIRDESDREGIRLVVELK-QGVNPQV 308 Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384 ++ + + +ET + + VL G+ P+ + L L++++ +R EV+ RR+ F ++ + Sbjct: 309 VLNQLHKHTQLETTYGIINLVLVDGQ-PRTLTLKETLEQYINYRAEVIERRTRFELEQAE 367 Query: 385 RRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVDAILNLRLRSLRK 441 +R IL G+LIA +IDE+IA+IR P + ++++RF L+E Q AIL++RL+ L Sbjct: 368 KRAHILAGILIALRDIDEVIALIRGSPSPSDARNLLMNRFGLSEEQARAILDMRLQRLTG 427 Query: 442 LEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCE 501 LE+ ++ SE L + ++ +L S + + I E+RE+ EI+ RRT E Sbjct: 428 LEQEKVASEARELESTIARLKGILASRTEVLDIIKNELRELDEIYGDD-----RRTEILE 482 Query: 502 VSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG-----------DS 550 + ++ + +I+ E + V+I+N G+I K + + + + G D Sbjct: 483 ---SVESVRPEDLIQDEEVAVIITNNGYI---KRQPLSVYRMQRRGGKGSIGAETKSEDF 536 Query: 551 LKIALHAHTTDRILLLSTDGKA-----YTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605 + A T D +++ + GKA Y +P ++S G I L+ L N+ I A Sbjct: 537 VTDIFTASTLDYLMIFTDRGKAHWLRVYEIP---MVSKVARGRPIASLLQLEENERITEA 593 Query: 606 FVYDS--TCKLLVVSSKGNAFIVEESEIIANTRKG 638 +S T + +V++++ + + +N R+G Sbjct: 594 IPVESFGTDEYIVLATRNGSIVKTPLRAFSNPRRG 628 >gi|319399909|gb|EFV88155.1| DNA gyrase, A subunit [Staphylococcus epidermidis FRI909] Length = 893 Score = 429 bits (1102), Expect = e-117, Method: Compositional matrix adjust. Identities = 262/694 (37%), Positives = 408/694 (58%), Gaps = 37/694 (5%) Query: 26 LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85 + E +L YA+S I RA+PD+RDG KPVHRRI++ ++E G+ +KKSARIVG+V+GK Sbjct: 18 MRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKSARIVGDVMGK 77 Query: 86 LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145 HPHGD S+Y+++VR+AQ F RYPL+ GQGNFG++DGD AAA RYTEARMT++ +L+ Sbjct: 78 YHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEARMTKITLELLR 137 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 +++D +DF D Y+ + EP V P++FPNLL NG +GIAVGMAT+IP HN+ E+ + L+ Sbjct: 138 DINKDTIDFIDNYDGNEREPSVLPARFPNLLVNGAAGIAVGMATNIPPHNLTEVIDGVLS 197 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265 L NP+I+I +L+E I GPDFPT G+++ + I +Y GRG ++R+R +EE G G Sbjct: 198 LSKNPDITINELMEDIQGPDFPTAGLVL-GKSGIRRAYETGRGSIQMRSRAEIEERGGGR 256 Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA--EDVRIVLFPKNRSLDPD 323 IVVTEIP+QV K+R+IEKIAEL+ K+I + D+RDE++ VR+V+ + + + Sbjct: 257 QRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRVVIDVR-KDANAS 315 Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383 +++ +++ + ++T F +NM L GR P+++ L L +L H++ V+ RR+ + ++ Sbjct: 316 VILNNLYKQTPLQTSFGVNMIALVNGR-PKLINLKEALIHYLEHQKTVVRRRTEYNLKKA 374 Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVDAILNLRLRSLR 440 R IL+GL IA +IDEII IR D K M S RF LTE Q AIL++RLR L Sbjct: 375 RDRAHILEGLRIALDHIDEIITTIRESDTDKIAMASLQERFKLTERQAQAILDMRLRRLT 434 Query: 441 KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500 LE +I+SE + LL ++++ +L + + E+ E+KE F RRT Sbjct: 435 GLERDKIESEYNELLEYIKELEEILADEEVLLQLVRDELTEIKERFGDE-----RRT--- 486 Query: 501 EVSRADKATLQ-QAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSL 551 E+ L+ + +I +E I + +S+ +I RS + ++ + D + Sbjct: 487 EIQLGGLEDLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRSQNRGGRGIQGMNTLDEDFV 546 Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAFV-- 607 + T D +L + G+ Y L + LS + G I I+L +++ I T Sbjct: 547 SQLVTMSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPIINAIELENDETISTMIAVK 606 Query: 608 -YDSTCKLLVVSSKGNAFIVEESEIIANTR---KGKTFLKVSSEEKMKLVVKVTGDHVAV 663 +S LV ++K IV+ S + +R GK + ++++ V TG+ + Sbjct: 607 DLESEEDYLVFATKQG--IVKRSSLSNFSRINKNGKIAINFKEDDELIAVRLTTGNEDIL 664 Query: 664 VGENRKLLI-FSIDQIPEMSR-GKGVRLQSYKDG 695 +G LI FS + + R GV+ S ++G Sbjct: 665 IGTAHASLIRFSESTLRPLGRTAAGVKGISLREG 698 >gi|15641271|ref|NP_230903.1| DNA gyrase, subunit A [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121590733|ref|ZP_01678064.1| DNA gyrase, subunit A [Vibrio cholerae 2740-80] gi|121729795|ref|ZP_01682231.1| DNA gyrase, subunit A [Vibrio cholerae V52] gi|147673690|ref|YP_001216823.1| DNA gyrase, subunit A [Vibrio cholerae O395] gi|227081430|ref|YP_002809981.1| DNA gyrase, subunit A [Vibrio cholerae M66-2] gi|229505155|ref|ZP_04394665.1| DNA gyrase subunit A [Vibrio cholerae BX 330286] gi|229518292|ref|ZP_04407736.1| DNA gyrase subunit A [Vibrio cholerae RC9] gi|229525857|ref|ZP_04415262.1| DNA gyrase subunit A [Vibrio cholerae bv. albensis VL426] gi|229608175|ref|YP_002878823.1| DNA gyrase subunit A [Vibrio cholerae MJ-1236] gi|254848382|ref|ZP_05237732.1| DNA gyrase [Vibrio cholerae MO10] gi|262159069|ref|ZP_06030181.1| DNA gyrase subunit A [Vibrio cholerae INDRE 91/1] gi|262169427|ref|ZP_06037119.1| DNA gyrase subunit A [Vibrio cholerae RC27] gi|9655742|gb|AAF94417.1| DNA gyrase, subunit A [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121547414|gb|EAX57525.1| DNA gyrase, subunit A [Vibrio cholerae 2740-80] gi|121628470|gb|EAX60960.1| DNA gyrase, subunit A [Vibrio cholerae V52] gi|146315573|gb|ABQ20112.1| DNA gyrase, subunit A [Vibrio cholerae O395] gi|227009318|gb|ACP05530.1| DNA gyrase, subunit A [Vibrio cholerae M66-2] gi|227013175|gb|ACP09385.1| DNA gyrase, subunit A [Vibrio cholerae O395] gi|229339438|gb|EEO04455.1| DNA gyrase subunit A [Vibrio cholerae bv. albensis VL426] gi|229345007|gb|EEO09981.1| DNA gyrase subunit A [Vibrio cholerae RC9] gi|229357378|gb|EEO22295.1| DNA gyrase subunit A [Vibrio cholerae BX 330286] gi|229370830|gb|ACQ61253.1| DNA gyrase subunit A [Vibrio cholerae MJ-1236] gi|254844087|gb|EET22501.1| DNA gyrase [Vibrio cholerae MO10] gi|262022240|gb|EEY40949.1| DNA gyrase subunit A [Vibrio cholerae RC27] gi|262029254|gb|EEY47906.1| DNA gyrase subunit A [Vibrio cholerae INDRE 91/1] Length = 894 Score = 428 bits (1101), Expect = e-117, Method: Compositional matrix adjust. Identities = 258/646 (39%), Positives = 378/646 (58%), Gaps = 64/646 (9%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + V++ L YL YA+S I RA+PD+RDG KPVHRR++ AM+ +G D+ A+KKSA Sbjct: 8 ITPVNIEDELRSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKKSA 67 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG+IDGDSAAA RYTE RM Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVRM 127 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 +++A +L +D++ VD+ Y+ + P V P+K PNLL NG SGIAVGMAT+IP HN+ Sbjct: 128 SKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGASGIAVGMATNIPPHNL 187 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ + LA IDN I+I++L++YI GPDFPT +I R+ I+++Y+ GRG +R++ Sbjct: 188 GEVIDGCLAYIDNEAITIDELMDYIPGPDFPTAALI-SGRKGIIDAYKTGRGKVYMRSKA 246 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFP 315 +E G I+V+EIPYQV K+RLIEKIAEL+ K++ + +RDES +D +RIV+ Sbjct: 247 EIETDKNGKETIIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDGMRIVIEC 306 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 K R ++++ +++ + ++T F +NM L G+ P++ L +LK ++ HRREV+ RR Sbjct: 307 K-RDAVGEVVLNNLYANTQLQTTFGINMVALDNGQ-PKLFNLKEMLKCFVDHRREVVTRR 364 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR------------ 420 + F ++ R IL+GL +A NIDEII +IR P K +++R Sbjct: 365 TIFELRKARERAHILEGLALALANIDEIIELIRRAATPAEAKEGLIARGWDLGNVAAMLE 424 Query: 421 ----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458 + LTE Q AIL+LRL L LE +I E LL E Sbjct: 425 RAGTDAARPEWLEPQYGIRDGKYFLTEQQAQAILDLRLHKLTGLEHEKILDEYKQLLEEI 484 Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518 + +L S ++ I E+ ++ FS + RRT E++ A + +I +E Sbjct: 485 AALMHILASTERLMEVIREELEAIRAGFSDA-----RRT---EITAATHDIDMEELIARE 536 Query: 519 PITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570 + V +S+ G+++ + + SA KE D ++ L A+T D ILL ST G Sbjct: 537 DVVVTLSHEGYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFSTRG 596 Query: 571 KAYTLPAGNL-LSGR-GHGEAIQLLIDLNHNQDI-----VTAFVYD 609 K Y + L L+ R G+ I L+ L N+ I VT F D Sbjct: 597 KTYRMKVYQLPLASRTARGKPIVNLLPLEENERITAILPVTEFSED 642 >gi|27466923|ref|NP_763560.1| DNA gyrase subunit A [Staphylococcus epidermidis ATCC 12228] gi|251811369|ref|ZP_04825842.1| DNA gyrase subunit A [Staphylococcus epidermidis BCM-HMP0060] gi|282874726|ref|ZP_06283605.1| DNA gyrase, A subunit [Staphylococcus epidermidis SK135] gi|293367575|ref|ZP_06614228.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Staphylococcus epidermidis M23864:W2(grey)] gi|82592835|sp|P0C0R0|GYRA_STAES RecName: Full=DNA gyrase subunit A gi|27314465|gb|AAO03602.1|AE016744_5 DNA gyrase subunit A [Staphylococcus epidermidis ATCC 12228] gi|251805118|gb|EES57775.1| DNA gyrase subunit A [Staphylococcus epidermidis BCM-HMP0060] gi|281296442|gb|EFA88957.1| DNA gyrase, A subunit [Staphylococcus epidermidis SK135] gi|291318288|gb|EFE58681.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Staphylococcus epidermidis M23864:W2(grey)] gi|329724140|gb|EGG60658.1| DNA gyrase, A subunit [Staphylococcus epidermidis VCU144] Length = 893 Score = 428 bits (1101), Expect = e-117, Method: Compositional matrix adjust. Identities = 262/694 (37%), Positives = 408/694 (58%), Gaps = 37/694 (5%) Query: 26 LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85 + E +L YA+S I RA+PD+RDG KPVHRRI++ ++E G+ +KKSARIVG+V+GK Sbjct: 18 MRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKSARIVGDVMGK 77 Query: 86 LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145 HPHGD S+Y+++VR+AQ F RYPL+ GQGNFG++DGD AAA RYTEARMT++ +L+ Sbjct: 78 YHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEARMTKITLELLR 137 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 +++D +DF D Y+ + EP V P++FPNLL NG +GIAVGMAT+IP HN+ E+ + L+ Sbjct: 138 DINKDTIDFIDNYDGNEREPSVLPARFPNLLVNGAAGIAVGMATNIPPHNLTEVIDGVLS 197 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265 L NP+I+I +L+E I GPDFPT G+++ + I +Y GRG ++R+R +EE G G Sbjct: 198 LSKNPDITINELMEDIQGPDFPTAGLVL-GKSGIRRAYETGRGSIQMRSRAEIEERGGGR 256 Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA--EDVRIVLFPKNRSLDPD 323 IVVTEIP+QV K+R+IEKIAEL+ K+I + D+RDE++ VR+V+ + + + Sbjct: 257 QRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRVVIDVR-KDANAS 315 Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383 +++ +++ + ++T F +NM L GR P+++ L L +L H++ V+ RR+ + ++ Sbjct: 316 VILNNLYKQTPLQTSFGVNMIALVNGR-PKLINLKEALIHYLEHQKTVVRRRTEYNLKKA 374 Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVDAILNLRLRSLR 440 R IL+GL IA +IDEII IR D K M S RF LTE Q AIL++RLR L Sbjct: 375 RDRAHILEGLRIALDHIDEIITTIRESDTDKIAMASLQERFKLTERQAQAILDMRLRRLT 434 Query: 441 KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500 LE +I+SE + LL ++++ +L + + E+ E+KE F RRT Sbjct: 435 GLERDKIESEYNELLEYIKELEEILADEEVLLQLVRDELTEIKERFGDE-----RRT--- 486 Query: 501 EVSRADKATLQ-QAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSL 551 E+ L+ + +I +E I + +S+ +I RS + ++ + D + Sbjct: 487 EIQLGGLEDLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRSQNRGGRGIQGMNTLDEDFV 546 Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAFV-- 607 + T D +L + G+ Y L + LS + G I I+L +++ I T Sbjct: 547 SQLVTMSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPIINAIELENDETISTMIAVK 606 Query: 608 -YDSTCKLLVVSSKGNAFIVEESEIIANTR---KGKTFLKVSSEEKMKLVVKVTGDHVAV 663 +S LV ++K IV+ S + +R GK + ++++ V TG+ + Sbjct: 607 DLESEEDYLVFATKQG--IVKRSSLSNFSRINKNGKIAINFKEDDELIAVRLTTGNEDIL 664 Query: 664 VGENRKLLI-FSIDQIPEMSR-GKGVRLQSYKDG 695 +G LI FS + + R GV+ S ++G Sbjct: 665 IGTAHASLIRFSESTLRPLGRTAAGVKGISLREG 698 >gi|52841647|ref|YP_095446.1| DNA gyrase, subunit A, type II topoisomerase [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52628758|gb|AAU27499.1| DNA gyrase, A subunit [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 871 Score = 428 bits (1101), Expect = e-117, Method: Compositional matrix adjust. Identities = 286/802 (35%), Positives = 437/802 (54%), Gaps = 87/802 (10%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 V V++ L++ YL YA+S I RA+PD+RDG KPVHRR++ AMSE+ D+ +KKSA Sbjct: 16 VLPVNIEDELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELSNDWNKPYKKSA 75 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD +VYD++VR+AQPF RY LI GQGNFG++DGD+ AA RYTE RM Sbjct: 76 RVVGDVIGKYHPHGDTAVYDTIVRMAQPFSMRYMLIDGQGNFGSVDGDAPAAMRYTEVRM 135 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 ++VA +L +D++ VDF Y+E + PVV PS+ PNLL NG+SGIAVGMAT+IP HN+ Sbjct: 136 SKVAHALLADLDKETVDFSPNYDETEFAPVVLPSRIPNLLVNGSSGIAVGMATNIPPHNL 195 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ A +AL+D P+ S+E L+E I GPDFPT II R I+E YR G+G +RAR Sbjct: 196 TEVINACIALVDEPDTSLEDLMEIIPGPDFPTAAII-NGRAGIIEGYRTGKGRVVIRART 254 Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315 +E + G I++ E+PYQV K+RLIE+IAEL+ K+I + +RDES + V+ Sbjct: 255 EIETDESSGRQSIIIQELPYQVNKARLIERIAELVRDKKIEGISGLRDESDKQGMRVVIE 314 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 R+ D+++ ++F + M+ F +NM L G+ P+ + L IL+ ++ HRREV+ RR Sbjct: 315 LKRNEVADVVLNNLFAHTQMQNVFGINMVALVDGQ-PRTLNLKQILEYFIKHRREVVTRR 373 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP------------KPVMV----- 418 + F ++ R +L+GL IA NIDE+IA+I+ P +P +V Sbjct: 374 TIFELKKARSRAHLLEGLGIALANIDEMIALIKQSPTPQDAKSALLSKIWQPGLVKAMLE 433 Query: 419 --------------------SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458 S + L+E Q AIL LRL L LE+ +I +E + LL Sbjct: 434 KAGSNASRPDDLTEEYGLHESGYKLSEAQAQAILELRLHRLTALEQDKIINEFEELLNLI 493 Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518 +++ +L S ++ I E+ E+K F RRT E++ + + + +I +E Sbjct: 494 KELLDILASPERLMQVIRDELIEIKSQFGDE-----RRT---EITASQEDLTIEDLITEE 545 Query: 519 PITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570 + V +S++G+++ + + SA H K+ D ++ + A T D +L S G Sbjct: 546 DVVVTLSHQGYVKYQPITAYQAQRRGGKGKSATHVKDEDFVERLVIASTHDTLLCFSNHG 605 Query: 571 -----KAYTLPAGNLLS-GR--------GHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLV 616 KAY LP + S GR GE I ++ + +D ++V+ +T K V Sbjct: 606 KLYWLKAYQLPQASRASRGRPIINILPLAEGEEINAMLPVREYKD--GSYVFMATKKGTV 663 Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV-VKVT--GDHVAVVGENRKLLIF 673 NAF + + + V EE LV V +T + + + K++ F Sbjct: 664 KKVPLNAF---------SRPRSNGIIAVDLEEDDSLVGVDITDGARDIMLFTDAGKVIRF 714 Query: 674 SIDQIPEMSR-GKGVR-LQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLG 731 ++ M R +GVR ++ KD + ++ G T + + Y + + + Sbjct: 715 DESKVRPMGRTARGVRGIRVEKDQAVKSLVVVDPSGG-TILTATENGYGKRTHIDEYRVS 773 Query: 732 KRGGVGSLVPKGFPRSGKFLSS 753 RGG G + + R+GK + S Sbjct: 774 GRGGQGVISIQVTERNGKVVRS 795 >gi|19705415|ref|NP_602910.1| DNA gyrase subunit A [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|296328807|ref|ZP_06871321.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|19713408|gb|AAL94209.1| DNA gyrase subunit A [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|296154142|gb|EFG94946.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 811 Score = 428 bits (1101), Expect = e-117, Method: Compositional matrix adjust. Identities = 245/635 (38%), Positives = 383/635 (60%), Gaps = 52/635 (8%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 NV + L+E YL Y++S I RA+PD+RDG KPVHRRI+ AM+EMG+ FKKS Sbjct: 3 NVDNRYIEEELKESYLDYSMSVIVSRALPDVRDGLKPVHRRILFAMNEMGMTNDKPFKKS 62 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 ARIVGEV+GK HPHGD +VY ++VR+AQ F RY L+ G GNFG+IDGDSAAA RYTEAR Sbjct: 63 ARIVGEVLGKYHPHGDSAVYGTMVRMAQDFNYRYLLVEGHGNFGSIDGDSAAAMRYTEAR 122 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 M ++ +L+ +D+D +D+R +++ EP V P+K PNLL NG GIAVGMAT+IP HN Sbjct: 123 MEKITAELLEDIDKDTIDWRKNFDDSLDEPTVLPAKLPNLLLNGAIGIAVGMATNIPPHN 182 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 + E+ + LA+IDN +I I +L+ YI GPDFPTG II + R I+++Y+ GRG +VR + Sbjct: 183 LGELVDGILAIIDNKDIEILELMNYIKGPDFPTGAII-DGRVGIIDAYKTGRGKIKVRGK 241 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLF 314 +EE+ G I+V+EIPYQ+ K+ LIEKIA L+ K+I + D+RDES E +RI++ Sbjct: 242 VDIEELKNGKSNIIVSEIPYQLNKANLIEKIANLVKEKKITEISDLRDESNREGIRILIE 301 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K + +P+L++ ++ +D++T F + M L + VP+V+ L +L E++ HR +V+ R Sbjct: 302 VK-KGEEPELVLNKLYKYTDLQTTFGVIMLSL-VNNVPRVLNLKEMLNEYIKHRFDVITR 359 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAI 431 R++F + ++R ILKG IA NID II +IR + ++ +++ T+ Q +I Sbjct: 360 RTAFDLDKAEKRAHILKGYQIALENIDRIIELIRASSDGTVAREQLIEKYAFTDIQARSI 419 Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491 L+++L+ L LE +I +E ++I++L+ E+REV E +K D Sbjct: 420 LDMKLQRLTGLEREKIDTEF-------KEIETLIK-----------ELREVLEDNNKIYD 461 Query: 492 L------------GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539 + G +R T E R + L + +I+ E I + +N+G+++ +++ Sbjct: 462 IMKKELLELKEKYGDKRRTKIEEERME--ILPEDLIKDEEIIITYTNKGYVKRIEASKYK 519 Query: 540 --------LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEA 589 +SAL+ E D + A T D I++ + GK Y + A + LS + G Sbjct: 520 AQRRGGKGVSALNTIEDDYAEKITSASTLDTIMVFTDRGKVYNIRAYEIPDLSRQSRGRL 579 Query: 590 IQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKG 621 + +I+L+ + + V + +++ ++ KG Sbjct: 580 LSNIINLSEGEKVRDTIVIKEFSPEKEVVFITKKG 614 >gi|108763597|ref|YP_630704.1| type II DNA topoisomerase subunit A [Myxococcus xanthus DK 1622] gi|108467477|gb|ABF92662.1| type II DNA topoisomerase, A subunit [Myxococcus xanthus DK 1622] Length = 813 Score = 428 bits (1101), Expect = e-117, Method: Compositional matrix adjust. Identities = 249/685 (36%), Positives = 396/685 (57%), Gaps = 25/685 (3%) Query: 29 RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM-SEMGLDFGAAFKKSARIVGEVIGKLH 87 RY+ YALS I RA+PD+RDG KPV RRI+ M + L A ++KSA++VG V+G+ H Sbjct: 67 RYINYALSVITSRALPDVRDGLKPVQRRILFGMFHDHRLTHEAKYQKSAKVVGSVMGQYH 126 Query: 88 PHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGV 147 PHGD S+Y++LVR+AQ F RYPL+ G GNFG++DGD AAA RYTE R+ ++ +L + Sbjct: 127 PHGDASIYEALVRMAQDFSLRYPLVDGHGNFGSLDGDGAAAMRYTECRLAMLSSELLTEL 186 Query: 148 DEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALI 207 + V FR TY+ EPVV P++ P LL NGT+GIAVGMAT+IP H++ E+ +A +ALI Sbjct: 187 GKKTVAFRPTYDGTLQEPVVIPARVPQLLMNGTTGIAVGMATNIPPHHLGELVDALVALI 246 Query: 208 DNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWC 267 +NP++ + LL+++ GPDFPTGG I+ ++ + + Y G+G R+R + +E++ RG Sbjct: 247 ENPQLLTKDLLKWVKGPDFPTGGQILNDKKELRDIYESGQGSIRIRGEYKLEDLKRGGQQ 306 Query: 268 IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLME 327 IV+T IPY V KS L+ K +L+ +++PL+ D+RDES +DVRIVL K + +P+L+M Sbjct: 307 IVITSIPYTVNKSTLVAKFGDLVRERKLPLITDVRDESTKDVRIVLELK-KDANPELVMA 365 Query: 328 SIFMLSDMETRFPLNMNVLSMGR------VPQVMPLDGILKEWLAHRREVLFRRSSFRMQ 381 ++ + ++T F +N+ L + P+ + L IL +L R +V+ +R + Sbjct: 366 YLYKQTPLQTNFGVNLTCLVPIKDKPELSTPERLNLRDILWYFLTFRFDVVTKRFEHELG 425 Query: 382 AIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVDAILNLRLRS 438 + RRV IL+G Y +DE+I IIR + + +++RF L E QVDAIL ++L Sbjct: 426 ELLRRVHILEGFEKVYDALDEMIKIIRASEGKQDAARKLIARFKLDEAQVDAILEMKLYK 485 Query: 439 LRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTT 498 L +LE ++ EL AE ++I +L + W + E+ E+K ++ +RRT Sbjct: 486 LARLEILVVEKELKEKRAEIKRIQGILKDKNKVWGTVRDELGEMKARYND-----KRRTR 540 Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAH 558 + +A I E VVI+ GW++ ++ D S +EGD++ L Sbjct: 541 IGGAGSEEMEFSAEAFIADEDAHVVITRDGWVKRVREVK-DPSTTRLREGDAVMAVLAGS 599 Query: 559 TTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTC----KL 614 ++L S G AY ++ + G+GE +Q + + +V+A D+ KL Sbjct: 600 LKANLVLFSNFGTAYVTRFNDVPASTGYGEPVQKFFKFDDGERVVSALSLDARLPRPQKL 659 Query: 615 LVVSSKGNAF-IVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLI 672 + V+ +G + E + +TR G+ + K +++ V VT D +AV+ E L+ Sbjct: 660 VGVTKQGMGMRFLLEPHLEVSTRAGRRYAKTGEGDEIIGVQPVTDRDLLAVLTEKTSALV 719 Query: 673 FSIDQIPEMS-RGKGVRLQSYKDGG 696 + ++ E++ GKGV + DGG Sbjct: 720 CKVAEVNELAGPGKGVTVIKV-DGG 743 >gi|224534775|ref|ZP_03675347.1| DNA gyrase, A subunit [Borrelia spielmanii A14S] gi|224514023|gb|EEF84345.1| DNA gyrase, A subunit [Borrelia spielmanii A14S] Length = 810 Score = 428 bits (1101), Expect = e-117, Method: Compositional matrix adjust. Identities = 246/631 (38%), Positives = 389/631 (61%), Gaps = 41/631 (6%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 +E + V + ++ YL YA+S I RA+PD+RDG KPVHRRI+++M EMGL AFK Sbjct: 7 KEQILNVKIEDEIKTSYLNYAMSVIVSRALPDVRDGLKPVHRRILYSMYEMGLRSDKAFK 66 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 K+ RIVG+V+GK HPHGDQS+YD+LVRLAQ F RYP+I GQGNFG+IDGD AA RYTE Sbjct: 67 KAGRIVGDVLGKYHPHGDQSIYDALVRLAQDFSLRYPVIRGQGNFGSIDGDPPAAMRYTE 126 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 A+M ++AE I++ +D++ V+F+ Y++ SEP + PS FP LL NG+SGIAVGMAT++ Sbjct: 127 AKMEKIAEYIVKDIDKETVNFKSNYDDSLSEPEIMPSSFPFLLVNGSSGIAVGMATNMAP 186 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN++EIC+A + ++DN S+ LL+ + GPDFPT G IV + ++++++Y+ G+G +R Sbjct: 187 HNLREICDAIVYMLDNENASMFDLLKIVKGPDFPTFGEIVYN-DNLIKAYKTGKGSVVIR 245 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIV 312 A++ +EE ++VTEIPY V KS L+ K+A L +++ L DIRDES E +RIV Sbjct: 246 AKYHIEERTEDRNAVIVTEIPYTVNKSALLMKVAFLAKEEKLEGLLDIRDESDREGIRIV 305 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 L K R DP ++M ++ ++ + F +N N+ + +P+ + L+ +L E++ HR+ ++ Sbjct: 306 LEVK-RGFDPHVIMNLLYEYTEFKKHFSIN-NLALVDGIPKQLNLEELLFEFIEHRKNII 363 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR----NEDKPKPVMVSRFSLTENQV 428 RR F ++ + +L+GL IA NIDE+I +I+ ++D K +V+ F L+E Q Sbjct: 364 ERRIEFDLKKAKEKAHVLEGLNIALNNIDEVIKVIKLSKLSKD-AKERLVANFGLSEIQA 422 Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAE-KEKIDSLLNSGKQQWNQIACEIREVKEIFS 487 +++L+++L+ L LE ++++ EL+ LL+ K+ D LLN +R + I Sbjct: 423 NSVLDMKLQKLTALEIFKLEEELNVLLSLIKDYEDILLNP-----------VRIINIIRE 471 Query: 488 KSTDLG-----RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD--- 539 ++ +LG RRT K ++ M +KE I V+++ +G+++ L + Sbjct: 472 ETINLGLKFGDERRTKIIYDEEVLKTSMSDLM-QKENIVVMLTKKGFLKRLSQNEYKLQG 530 Query: 540 -----LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQL 592 LS+ +GD + IAL +T D + ++S +GK Y + A + S G+ I Sbjct: 531 TGGKGLSSFDLNDGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRASKGQNISE 590 Query: 593 LIDLNHNQDIVT----AFVYDSTCKLLVVSS 619 LI+L ++I+T D C LL +S Sbjct: 591 LINLGAQEEILTIKNSKDFTDDACLLLTTAS 621 >gi|153829746|ref|ZP_01982413.1| DNA gyrase, A subunit [Vibrio cholerae 623-39] gi|148874780|gb|EDL72915.1| DNA gyrase, A subunit [Vibrio cholerae 623-39] Length = 848 Score = 428 bits (1101), Expect = e-117, Method: Compositional matrix adjust. Identities = 258/646 (39%), Positives = 379/646 (58%), Gaps = 64/646 (9%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + V++ L YL YA+S I RA+PD+RDG KPVHRR++ AM+ +G D+ A+KKSA Sbjct: 8 ITPVNIEDELRSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKKSA 67 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG+IDGDSAAA RYTE RM Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVRM 127 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 +++A +L +D++ VD+ Y+ + P V P+K PNLL NG+SGIAVGMAT+IP HN+ Sbjct: 128 SKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGSSGIAVGMATNIPPHNL 187 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ + LA IDN I+I++L++YI GPDFPT +I R+ I+++Y+ GRG +R++ Sbjct: 188 GEVIDGCLAYIDNEAITIDELMDYIPGPDFPTAALI-SGRKGIIDAYKTGRGKVYMRSKA 246 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFP 315 +E G I+V+EIPYQV K+RLIEKIAEL+ K++ + +RDES +D +RIV+ Sbjct: 247 EIETDKNGKETIIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDGMRIVIEC 306 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 K R ++++ +++ + ++T F +NM L G+ P++ L +LK ++ HRREV+ RR Sbjct: 307 K-RDAVGEVVLNNLYANTQLQTTFGINMVALDNGQ-PKLFNLKEMLKCFVDHRREVVTRR 364 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR------------ 420 + F ++ R IL+GL +A NIDEII +IR P K +++R Sbjct: 365 TIFELRKARERAHILEGLALALANIDEIIELIRRAATPAEAKEGLIARGWDLGNVAAMLE 424 Query: 421 ----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458 + LTE Q AIL+LRL L LE +I E LL E Sbjct: 425 RAGTDAARPEWLEPQYGIRDGKYFLTEQQAQAILDLRLHKLTGLEHEKILDEYKQLLEEI 484 Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518 + +L S ++ I E+ ++ FS + RRT E++ A + +I +E Sbjct: 485 AALMHILASTERLMEVIREELEAIRAGFSDA-----RRT---EITAATHDIDMEELIARE 536 Query: 519 PITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570 + V +S+ G+++ + + SA KE D ++ L A+T D ILL ST G Sbjct: 537 DVVVTLSHEGYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFSTRG 596 Query: 571 KAYTLPAGNL-LSGR-GHGEAIQLLIDLNHNQDI-----VTAFVYD 609 K Y + L L+ R G+ I L+ L N+ I VT F D Sbjct: 597 KTYRMKVYQLPLASRTARGKPIVNLLPLEENERITAILPVTEFSED 642 >gi|323487682|ref|ZP_08092940.1| DNA gyrase subunit A [Planococcus donghaensis MPA1U2] gi|323398416|gb|EGA91204.1| DNA gyrase subunit A [Planococcus donghaensis MPA1U2] Length = 852 Score = 428 bits (1101), Expect = e-117, Method: Compositional matrix adjust. Identities = 232/569 (40%), Positives = 359/569 (63%), Gaps = 22/569 (3%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 V+ +++ + +L YA+S I RA+PD+RDG KPVHRRI++AM ++G+ +KKSA Sbjct: 9 VEEINISTEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMHDLGITADKGYKKSA 68 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 RIVG+VIGK HPHGD +VY+++VR+AQ F RY L+ G GNFG++DGDSAAA RYTE++M Sbjct: 69 RIVGDVIGKYHPHGDSAVYETMVRMAQDFSYRYMLVDGHGNFGSVDGDSAAAMRYTESKM 128 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 ++++ +L+ ++++ VD+RD Y+ ++ EP+V PS+FPNLL NGTSGIAVGMAT+IP H++ Sbjct: 129 SKISMELLRDLNKNTVDYRDNYDGQEKEPIVLPSRFPNLLVNGTSGIAVGMATNIPPHHL 188 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E +A LAL DNP I+ E+L+E+I GPDFPTGGII+ R I +Y G+G +R+ Sbjct: 189 GETIDAVLALADNPAITTEELMEHIEGPDFPTGGIIL-GRSGIRRAYETGKGSVLIRSVV 247 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316 +E G I+V EIP+QV K+RLIEKIAEL+ K+I + D+RDES + ++ Sbjct: 248 DIETKPNGKEVIIVNEIPFQVNKARLIEKIAELVRDKKIDGITDLRDESDRNGMRIVIEV 307 Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376 R +L+ +++ + M+T F LNM L GR P+V+ L IL +L H++ V+ RR+ Sbjct: 308 RRDASASVLLNNLYKQTAMQTSFGLNMLALVDGR-PKVLSLKEILFHYLEHQKVVIRRRT 366 Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAILN 433 F + + R IL+GL IA +ID IIA+IR ++ + +++ F+LTE Q AIL+ Sbjct: 367 QFELTKAEDRAHILEGLRIALDHIDAIIALIRGSQTAEQARNGLMTDFNLTERQSQAILD 426 Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493 +RL+ L LE +I+ E L+ E++ +L + + I E+ E+K+ FS Sbjct: 427 MRLQRLTGLERDKIEEEYQALVKLIEELRYILANEYRILEIIKEEMLEIKDRFSD----- 481 Query: 494 RRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSLKSHSV--------DLSALH 544 +RRT E++ + + +I E + +++ G+I+ L +++ + + Sbjct: 482 KRRT---EITTGGAEMFEDEDLIPVEATVLTLTHNGYIKRLPANTYRSQKRGGRGVQGMG 538 Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAY 573 E D ++ L+ T D IL + GK Y Sbjct: 539 TNEDDFVEHLLYTSTHDTILFFTNKGKVY 567 >gi|110800886|ref|YP_694482.1| DNA gyrase subunit A [Clostridium perfringens ATCC 13124] gi|168215273|ref|ZP_02640898.1| DNA gyrase, A subunit [Clostridium perfringens CPE str. F4969] gi|110675533|gb|ABG84520.1| DNA gyrase, A subunit [Clostridium perfringens ATCC 13124] gi|170713335|gb|EDT25517.1| DNA gyrase, A subunit [Clostridium perfringens CPE str. F4969] Length = 839 Score = 428 bits (1101), Expect = e-117, Method: Compositional matrix adjust. Identities = 274/773 (35%), Positives = 438/773 (56%), Gaps = 54/773 (6%) Query: 11 TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70 +L E V + + +++ Y+ YA+S I RA+PD+RDG KPVHRRI+++M E+GL Sbjct: 2 SLNEGKVIPIDINKEMKKCYIDYAMSVIVGRALPDVRDGLKPVHRRILYSMQELGLYPER 61 Query: 71 AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130 ++K ARIVGEV+GK HPHGD SVYD+LVR+AQ F RY L+ G GNFG++DGDSAAA R Sbjct: 62 GYRKCARIVGEVLGKYHPHGDSSVYDALVRMAQDFSLRYMLVDGHGNFGSVDGDSAAAMR 121 Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190 YTEA+M ++A +L+ ++++ VDF ++ E+ EPVV PS++PNLL NG+SGIAVGMAT+ Sbjct: 122 YTEAKMNKIASEMLRDINKNTVDFIPNFDGEEKEPVVLPSRYPNLLVNGSSGIAVGMATN 181 Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250 IP HN+ E+ + +ALIDNPE++ +L+ YI GPDFPT GII+ + I +Y G+G Sbjct: 182 IPPHNLGEVIDGTIALIDNPELTSLELMTYIKGPDFPTAGIIM-GKSGIRAAYETGKGRI 240 Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDV 309 VRA+ +EE G I+VTE+PYQV K++LIE IA+L+ K+I + D+RDES E + Sbjct: 241 VVRAKAEIEE-ENGRHKIIVTELPYQVNKAKLIEYIADLVKDKKITGISDLRDESDREGM 299 Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369 R+V+ K R +P++ + ++ + M+ F + M L + PQ++ L +L ++ ++ Sbjct: 300 RMVIELK-RDANPNVTLNLLYKHTKMQDTFGVIMLAL-VDNQPQILNLKQVLVHYINFQK 357 Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTEN 426 +V+ RR+ F + R IL+GL+IA NID++I IIR+ K ++ RFSL+E Sbjct: 358 DVITRRTQFELNKAKERAHILEGLIIALDNIDDVINIIRSSKTSEIAKNTLIERFSLSEK 417 Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486 Q AIL +RLR L LE +I++E + L+ + ++++L S ++ I E+ E+K + Sbjct: 418 QAAAILEMRLRRLTGLERDKIENEYNELMKLIDYLNAILASEERLLEVIKEELLEIKAKY 477 Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD------- 539 S RRT ++ + + + +I++E + + +++ G+I+ + S Sbjct: 478 SDE-----RRT---QIEKQENEIDIEDLIQEEDVVITLTHTGYIKRISSDVYSAQKRGGK 529 Query: 540 -LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEAIQLLIDL 596 + A+ KE D ++ L T +L +T GK Y + A + +GR G + ++ L Sbjct: 530 GIQAMTTKEDDFVENVLVTSTHSNLLFFTTKGKVYKIKAYEVPDAGRTAKGTNLVNILPL 589 Query: 597 NHNQDIVTAFVYDST---------CKLLVVSS---KGNAFIVEESEIIANTRKGKTFLKV 644 ++ I T + KL +V K I + I N R+G L+ Sbjct: 590 EADEKIQTVLSFKDVQEDGYLFMGTKLGIVKKTPLKDFKNIRKNGLIALNLREGDELLRA 649 Query: 645 SSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICF 703 ++ VT D A+ F+ + M R GV+ S ++G ++ +C Sbjct: 650 KITYGDADIIFVTQDGNAIR--------FNETDVRPMGRTASGVKAISLREGDVA--VCM 699 Query: 704 KIC---EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753 I E L + G Y + N + RGG+G + K ++GK + + Sbjct: 700 DIAVEDEKLLVVSENG--YGKRTNLDEYKVQNRGGIGLITYKVSDKTGKVVGA 750 >gi|329735767|gb|EGG72048.1| DNA gyrase, A subunit [Staphylococcus epidermidis VCU028] Length = 894 Score = 428 bits (1101), Expect = e-117, Method: Compositional matrix adjust. Identities = 262/694 (37%), Positives = 408/694 (58%), Gaps = 37/694 (5%) Query: 26 LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85 + E +L YA+S I RA+PD+RDG KPVHRRI++ ++E G+ +KKSARIVG+V+GK Sbjct: 18 MRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKSARIVGDVMGK 77 Query: 86 LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145 HPHGD S+Y+++VR+AQ F RYPL+ GQGNFG++DGD AAA RYTEARMT++ +L+ Sbjct: 78 YHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEARMTKITLELLR 137 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 +++D +DF D Y+ + EP V P++FPNLL NG +GIAVGMAT+IP HN+ E+ + L+ Sbjct: 138 DINKDTIDFIDNYDGNEREPSVLPARFPNLLVNGAAGIAVGMATNIPPHNLTEVIDGVLS 197 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265 L NP+I+I +L+E I GPDFPT G+++ + I +Y GRG ++R+R +EE G G Sbjct: 198 LSKNPDITINELMEDIQGPDFPTAGLVL-GKSGIRRAYETGRGSIQMRSRAEIEERGGGR 256 Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA--EDVRIVLFPKNRSLDPD 323 IVVTEIP+QV K+R+IEKIAEL+ K+I + D+RDE++ VR+V+ + + + Sbjct: 257 QRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRVVIDVR-KDANAS 315 Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383 +++ +++ + ++T F +NM L GR P+++ L L +L H++ V+ RR+ + ++ Sbjct: 316 VILNNLYKQTPLQTSFGVNMIALVNGR-PKLINLKEALIHYLEHQKTVVRRRTEYNLKKA 374 Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVDAILNLRLRSLR 440 R IL+GL IA +IDEII IR D K M S RF LTE Q AIL++RLR L Sbjct: 375 RDRAHILEGLRIALDHIDEIITTIRESDTDKIAMASLQERFKLTERQAQAILDMRLRRLT 434 Query: 441 KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500 LE +I+SE + LL ++++ +L + + E+ E+KE F RRT Sbjct: 435 GLERDKIESEYNELLEYIKELEEILADEEVLLQLVRDELTEIKERFGDE-----RRT--- 486 Query: 501 EVSRADKATLQ-QAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSL 551 E+ L+ + +I +E I + +S+ +I RS + ++ + D + Sbjct: 487 EIQLGGLEDLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRSQNRGGRGIQGMNTLDEDFV 546 Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAFV-- 607 + T D +L + G+ Y L + LS + G I I+L +++ I T Sbjct: 547 SQLVTMSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPIINAIELENDETISTMIAVK 606 Query: 608 -YDSTCKLLVVSSKGNAFIVEESEIIANTR---KGKTFLKVSSEEKMKLVVKVTGDHVAV 663 +S LV ++K IV+ S + +R GK + ++++ V TG+ + Sbjct: 607 DLESEEDYLVFATKQG--IVKRSSLSNFSRINKNGKIAINFKEDDELIAVRLTTGNEDIL 664 Query: 664 VGENRKLLI-FSIDQIPEMSR-GKGVRLQSYKDG 695 +G LI FS + + R GV+ S ++G Sbjct: 665 IGTAHASLIRFSESTLRPLGRTAAGVKGISLREG 698 >gi|197116407|ref|YP_002136834.1| DNA gyrase subunit A [Geobacter bemidjiensis Bem] gi|197085767|gb|ACH37038.1| DNA gyrase, A subunit [Geobacter bemidjiensis Bem] Length = 836 Score = 428 bits (1101), Expect = e-117, Method: Compositional matrix adjust. Identities = 244/603 (40%), Positives = 371/603 (61%), Gaps = 24/603 (3%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 N +V++ ++ Y+ YA+S I RA+PD+RDG KPVHRR + AM +M D+ +KKS Sbjct: 6 NKVSVNIEDEMKRSYMDYAMSVIVGRALPDVRDGLKPVHRRCLFAMYDMSNDWNKPYKKS 65 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 AR+VG+VIGK HPHGD +VYD+LVR+AQ F RYPL+ GQGNFG+IDGDS AA RYTE R Sbjct: 66 ARVVGDVIGKYHPHGDTAVYDTLVRMAQDFSLRYPLVDGQGNFGSIDGDSPAAMRYTEIR 125 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 M Q+A +L +D++ V + Y++ EP+V PSKFPNLL NG++GIAVGMAT+IP HN Sbjct: 126 MEQLAHELLADIDKETVPYGPNYDDSLKEPLVLPSKFPNLLVNGSAGIAVGMATNIPPHN 185 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 + E+ + +A+IDNP+++ E+L+E I GPDFPTGG I RE I+++Y GRG ++RA+ Sbjct: 186 LSEVIDGIVAIIDNPQLTFEELVELIPGPDFPTGGFIY-GREGIMKAYSTGRGIIQMRAK 244 Query: 256 WCVEEVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314 +E + IVVTEIPYQV K+RL+EKIAEL+ K+I + D+RDES + V+ Sbjct: 245 VQIETQKKTERQSIVVTEIPYQVNKARLVEKIAELVKEKKIEGISDLRDESDREGMRVVI 304 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 + +P +++ ++ + M++ F + M + R P+V+ L + ++ HR+E++ R Sbjct: 305 ELKKDENPTIILNHLYKQTQMQSSFGIIMLAIVNSR-PRVLTLRETIDFFIEHRKEIVTR 363 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVDAI 431 R+ F ++ + R IL+GL IA N+DE+IA+I+ P K ++ RF L++ Q AI Sbjct: 364 RTIFDLKKAEARAHILEGLKIALDNLDEVIALIKASASPAEAKAGLMERFGLSDLQAQAI 423 Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491 L++RL L LE +I EL +L ++ +L S + I E+ E+K+ F Sbjct: 424 LDMRLHRLTGLEREKIMEELREILKYIARLKEILASEAEILKIIVGELVELKDKF----- 478 Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSAL 543 G +R + + AD +L+ ++E E + V IS+ G+I R+ + + + Sbjct: 479 -GDKRRSEIVMQTAD-ISLEDTIVE-EDMVVTISHTGYIKRNAVTLYRAQRRGGKGKTGM 535 Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEAIQLLIDLNHNQD 601 KE D ++ A T D ++ + GK Y L + +GR G+AI L++L N+ Sbjct: 536 KTKEEDFVEQLFIASTKDYLMFFTDAGKVYWLKVYEIPEAGRAARGKAIVNLLNLAANEK 595 Query: 602 IVT 604 I T Sbjct: 596 ITT 598 >gi|209364105|ref|YP_001424883.2| DNA gyrase subunit A [Coxiella burnetii Dugway 5J108-111] gi|207082038|gb|ABS77442.2| DNA gyrase subunit A [Coxiella burnetii Dugway 5J108-111] Length = 850 Score = 428 bits (1101), Expect = e-117, Method: Compositional matrix adjust. Identities = 281/784 (35%), Positives = 430/784 (54%), Gaps = 71/784 (9%) Query: 26 LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85 L++ YL YA+S I RA+PD+RDG KPVHRR+++AMSE+G D+ KKSARIVG+VIGK Sbjct: 19 LKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSELGNDWNKPNKKSARIVGDVIGK 78 Query: 86 LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145 HPHGD +VYD++VR+AQPF RY LI GQGNFG++DGD+ AA RYTE R+++ A ++ Sbjct: 79 YHPHGDVAVYDTIVRMAQPFSLRYLLIDGQGNFGSVDGDAPAAMRYTEIRLSRFAHALMA 138 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 +D++ VDF Y+E + P V P++ PNLL NG SGIAVGMAT+IP HN+ EI A LA Sbjct: 139 DLDKETVDFAPNYDETEMAPAVLPTRVPNLLINGASGIAVGMATNIPPHNLNEIINATLA 198 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265 LI+NP++++E+L+ +I GPDFPT GII R IV++Y+ GRG VRA+ +E G Sbjct: 199 LIENPDLNVEELMRHIPGPDFPTAGII-NGRNGIVQAYKTGRGRIYVRAKTEIETTKSGR 257 Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325 IV E+PYQV K+RL+EKI EL+ KRI + +RDES + ++ +R + +++ Sbjct: 258 SLIVAHELPYQVNKARLLEKIGELVREKRIEGISGLRDESDKRGMRMVIEVSRGDNAEIV 317 Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385 + +++ + ++T F +NM L G+ P+V+ L +L +L HRREV+ RR+ F ++ Sbjct: 318 LNNLYAQTQLQTVFGINMVALDNGQ-PRVLNLKQLLSAFLQHRREVVTRRTLFELRKARE 376 Query: 386 RVEILKGLLIAYLNIDEIIAIIRNEDKP------------KPVMVSRF------------ 421 R IL+GL +A NIDE+IA+I+ P KP V+ F Sbjct: 377 RAHILEGLGVALANIDEVIALIKKAKTPAIAKENLLAQAWKPGAVADFLKKAGSDRTRPD 436 Query: 422 -------------SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSG 468 L+ Q AIL+LRL L LE +I+ E ++ + E++ ++++ Sbjct: 437 DLAAEFGLRKEGYYLSPAQAQAILDLRLHRLTGLETDKIREEYIAIIDKIEELIAIVSDP 496 Query: 469 KQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATL-QQAMIEKEPITVVISNR 527 + I E+ VKE F RRT + D + L + +I +E V +S+ Sbjct: 497 DKLHEVIREELIAVKEQFGDE-----RRTVIID----DHSDLTHEDLIPEEHRVVTLSHE 547 Query: 528 GWIR--SLKSHSVDLS------ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN 579 G+I+ SL S+ A KE D +K L A++ D IL ST GK Y L Sbjct: 548 GYIKSQSLSSYQAQHRGGRGKLAAAVKEQDFVKNILVANSHDTILCFSTQGKVYWLKVYQ 607 Query: 580 LLSGR--GHGEAIQLLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIAN 634 + G G I L+ L ++ I YD + + + +++G V +E Sbjct: 608 VPQGSRIARGRPIINLLPLVKDEQISAILPIRAYDGSHFVFMATAQGAIKKVSLAEFSQP 667 Query: 635 TRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSRG----KGVRL 689 KGK L ++ +++ V G + +V + K + F ++ EM R +G++L Sbjct: 668 RTKGKIALALNEGDRLVGVDITDGKKEIMLVTDAGKAIRFHEKEVREMGRSARGVRGIKL 727 Query: 690 QSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGK 749 ++ ++ + +I K + G + +D RGG G + + R+GK Sbjct: 728 KAKQN--VIALIVVKPKGNILTATVHGYGQRTALDDYRST--GRGGQGVMAIRINSRNGK 783 Query: 750 FLSS 753 +S+ Sbjct: 784 VVSA 787 >gi|256846673|ref|ZP_05552129.1| DNA gyrase, A subunit [Fusobacterium sp. 3_1_36A2] gi|294784380|ref|ZP_06749671.1| DNA gyrase, A subunit [Fusobacterium sp. 3_1_27] gi|256717893|gb|EEU31450.1| DNA gyrase, A subunit [Fusobacterium sp. 3_1_36A2] gi|294487952|gb|EFG35307.1| DNA gyrase, A subunit [Fusobacterium sp. 3_1_27] Length = 811 Score = 428 bits (1101), Expect = e-117, Method: Compositional matrix adjust. Identities = 239/606 (39%), Positives = 376/606 (62%), Gaps = 25/606 (4%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 NV + L+E YL Y++S I RA+PD+RDG KPVHRRI+ AM+EMG+ FKKS Sbjct: 3 NVDNRYIEEELKESYLDYSMSVIVSRALPDVRDGLKPVHRRILFAMNEMGMTNDKPFKKS 62 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 ARIVGEV+GK HPHGD +VY ++VR+AQ F RY L+ G GNFG+IDGDSAAA RYTEAR Sbjct: 63 ARIVGEVLGKYHPHGDSAVYGTMVRMAQDFNYRYLLVEGHGNFGSIDGDSAAAMRYTEAR 122 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 M ++ +L+ +D++ +D+R +++ EP V P+K PNLL NG GIAVGMAT+IP HN Sbjct: 123 MEKITAELLEDIDKNTIDWRKNFDDSLDEPTVLPAKLPNLLLNGAIGIAVGMATNIPPHN 182 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 + E+ + LA+IDN +I I +L+ YI GPDFPTG II + R I+E+Y+ GRG +VR + Sbjct: 183 LGELVDGILAIIDNKDIEILELMNYIKGPDFPTGAII-DGRAGIIEAYKTGRGKIKVRGK 241 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLF 314 +EE+ G I+V+EIPYQ+ K+ LIEKIA L+ K+I + D+RDES E +RI++ Sbjct: 242 IDIEELKNGKSNIIVSEIPYQLNKANLIEKIANLVKEKKITEISDLRDESNREGIRILIE 301 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K + +P+L++ ++ +D++T F + M L + VP+V+ L +L E++ HR +V+ R Sbjct: 302 VK-KGEEPELVLNKLYKYTDLQTTFGVIMLSL-VNNVPRVLNLKEMLNEYIKHRFDVITR 359 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAI 431 R++F + ++R ILKG IA NID II +IR + ++ +++ T+ Q +I Sbjct: 360 RTAFDLDKAEKRAHILKGYQIALENIDRIIELIRASSDGTVAREQLIEKYAFTDIQARSI 419 Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491 L+++L+ L LE +I +E + A +++ +L + + + E+ E+KE ++ Sbjct: 420 LDMKLQRLTGLEREKIDTEFKEIEALIKELREVLEDNNKIYEIMKKELLELKEKYND--- 476 Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD--------LSAL 543 +R T E R + L + +I+ E I + +N+G+++ +++ +SAL Sbjct: 477 ---KRRTKIEEERME--ILPEDLIKDEEIIITYTNKGYVKRIEASKYKAQKRGGKGVSAL 531 Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQD 601 + E D + + A T D I++ + GK Y + A + LS + G + +I+L+ + Sbjct: 532 NTIEDDFAEKIISASTLDTIMVFTDKGKVYNIRAYEIPDLSKQSRGRLLSNIINLSEGEK 591 Query: 602 IVTAFV 607 + V Sbjct: 592 VRDTIV 597 >gi|218709923|ref|YP_002417544.1| DNA gyrase, subunit A [Vibrio splendidus LGP32] gi|218322942|emb|CAV19119.1| DNA gyrase, subunit A [Vibrio splendidus LGP32] Length = 890 Score = 428 bits (1101), Expect = e-117, Method: Compositional matrix adjust. Identities = 249/605 (41%), Positives = 362/605 (59%), Gaps = 57/605 (9%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + V++ L YL YA+S I RA+PD+RDG KPVHRR++ AM+ +G D+ A+KKSA Sbjct: 8 ITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKKSA 67 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD +VY+S+VR+AQPF RY L+ GQGNFG++DGDSAAA RYTE RM Sbjct: 68 RVVGDVIGKYHPHGDSAVYESIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEVRM 127 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 +++A +L +D+D VDF Y+ + P V P+K PNLL NG SGIAVGMAT+IP HN+ Sbjct: 128 SKIAGELLTDLDKDTVDFVPNYDGTEQIPAVLPTKIPNLLVNGASGIAVGMATNIPPHNL 187 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ + LA I+N +I+I++L++YI GPDFPT +I R+ IV++Y+ GRG +R+R Sbjct: 188 GEVVDGCLAFINNEDITIDELMDYIPGPDFPTAALI-SGRKGIVDAYKTGRGKVYMRSRA 246 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFP 315 +E G I+VTEIPYQV K+RLIEKIAEL+ K++ + +RDES +D +RIV+ Sbjct: 247 EIETEKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIEC 306 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 K R ++++ +++ + ++T F +NM L+ G+ PQ+ + +LK ++ HRREV+ RR Sbjct: 307 K-RDAVGEVVLNNLYSQTQLQTTFGINMVALNNGQ-PQLFNIKDMLKCFVDHRREVVTRR 364 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR------------ 420 + F ++ R IL+ L +A NIDEII +I+N P K +VSR Sbjct: 365 TIFELKKARDRAHILEALSLALANIDEIIELIKNAPTPAEAKVGLVSRGWDLGNVASMLE 424 Query: 421 ----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458 + LTE Q AIL LRL L LE +I E LL E Sbjct: 425 RAGTDAARPDWLEDQYGIRDGQYFLTETQAQAILELRLHRLTGLEHEKILDEYKALLEEI 484 Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518 ++ +L S ++ I E+ V++I+ RRT E++ A + +I +E Sbjct: 485 AELMHILASTERLMEVIREELEAVRDIYGDE-----RRT---EITAAVHDIDMEELIAQE 536 Query: 519 PITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570 + V +SN G+++ + + SA K+ D ++ L A+T D IL ST G Sbjct: 537 DVVVTLSNAGYVKYQILSDYEAQRRGGKGKSATKMKDEDYIERLLVANTHDNILCFSTRG 596 Query: 571 KAYTL 575 K Y L Sbjct: 597 KTYRL 601 >gi|154684525|ref|YP_001419686.1| DNA gyrase subunit A [Bacillus amyloliquefaciens FZB42] gi|154350376|gb|ABS72455.1| GyrA [Bacillus amyloliquefaciens FZB42] Length = 793 Score = 428 bits (1101), Expect = e-117, Method: Compositional matrix adjust. Identities = 227/550 (41%), Positives = 350/550 (63%), Gaps = 20/550 (3%) Query: 35 LSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSV 94 +S I RA+PD+RDG KPVHRRI++AM+++G+ +KKSARIVGEVIGK HPHGD +V Sbjct: 1 MSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYHPHGDSAV 60 Query: 95 YDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDF 154 Y+S+VR+AQ F RY L+ G GNFG++DGDSAAA RYTEARM+++A IL+ + +D +D+ Sbjct: 61 YESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKIAMEILRDITKDTIDY 120 Query: 155 RDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISI 214 +D Y+ + EPVV PS+FPNLL NG +GIAVGMAT+IP H + E+ E LA+ +NPEI+ Sbjct: 121 QDNYDGAEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEVIEGVLAVSENPEITN 180 Query: 215 EKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIP 274 ++L+EYI GPDFPT G I+ R I ++Y GRG +RA+ +EE G I+VTE+P Sbjct: 181 QELMEYIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEETSSGKERIIVTELP 239 Query: 275 YQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSD 334 YQV K+RLIEKIA+L+ K+I + D+RDES + ++ R + +++ +++ + Sbjct: 240 YQVNKARLIEKIADLVRDKKIEGITDLRDESDRNGMRIVIEIRRDANAHVILNNLYKQTA 299 Query: 335 METRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLL 394 ++T F +N+ L G+ P+V+ L L+ +L H++ V+ RR+++ ++ + R IL+GL Sbjct: 300 LQTSFGINLLALVDGQ-PKVLSLKQCLEHYLDHQKVVIRRRTAYELRKAEARAHILEGLR 358 Query: 395 IAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451 IA ++D +I++IRN + ++ +FSLTE Q AIL++RL+ L LE +I+ E Sbjct: 359 IALDHLDAVISLIRNSQTAEIARTGLIEQFSLTEKQAQAILDMRLQRLTGLEREKIEEEY 418 Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511 +L+A ++ +L + + I E+ E+KE F+ RRT V+ + Sbjct: 419 QSLVALIAELKDILANEARVLEIIREELNEIKERFNDE-----RRTEI--VTSGLETIED 471 Query: 512 QAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRI 563 + +IE+E I + +++ G++ RS K + + E D ++ + T D I Sbjct: 472 EDLIERENIVITLTHNGYVKRLPASTYRSQKRGGKGVQGMGTNEDDFVEHLISTSTHDTI 531 Query: 564 LLLSTDGKAY 573 L S GK Y Sbjct: 532 LFFSNKGKVY 541 >gi|109898785|ref|YP_662040.1| DNA gyrase, A subunit [Pseudoalteromonas atlantica T6c] gi|109701066|gb|ABG40986.1| DNA gyrase subunit A [Pseudoalteromonas atlantica T6c] Length = 897 Score = 428 bits (1101), Expect = e-117, Method: Compositional matrix adjust. Identities = 261/635 (41%), Positives = 366/635 (57%), Gaps = 65/635 (10%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 +++ L+ YL YA+S I RA+PD+RDG KPVHRR++ AM+E+ DF +KKSAR+V Sbjct: 11 INIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELKNDFNKPYKKSARVV 70 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG++DGDSAAA RYTE RM ++ Sbjct: 71 GDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRMAKI 130 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 + +L ++++ VDF Y+ + P V P+K PNLL NG+SGIAVGMAT+IP HN+ E+ Sbjct: 131 SHELLADLEKETVDFVPNYDGTEFIPDVLPTKVPNLLINGSSGIAVGMATNIPPHNLTEV 190 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 +ALID PE+SIE+L+EYI GPDFPT I R+ I E+YR GRG +RAR +E Sbjct: 191 VNGCIALIDKPELSIEELMEYIPGPDFPTAAFI-SGRKGIEEAYRTGRGKIYMRARAEIE 249 Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKNR 318 G IVV EIPYQV K+RLIEKIAEL+ K+I + +RDES +D +RIV+ K R Sbjct: 250 REDNGKETIVVHEIPYQVNKARLIEKIAELVKEKKIEGISALRDESDKDGMRIVVEVK-R 308 Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378 + ++L+ ++ + M+T F +NM L + P+V L IL+ ++ HRREV+ RR+ F Sbjct: 309 NESGEVLLNHLYSQTQMQTVFGINMVALDKTQ-PKVFNLLEILQAFVLHRREVVTRRTVF 367 Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS------------------- 419 ++ R IL+GL IA NID IIA+I+ P +S Sbjct: 368 ELKKARERAHILEGLAIALANIDPIIALIKASKSPSDAKISLTAQGWALGDVSDMLERAG 427 Query: 420 ------------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKI 461 + LTE Q AIL+LRL L LE +I SE LL ++ Sbjct: 428 NDAARPDWLEPEFGIRDGLYYLTEQQAQAILDLRLNKLTGLEHEKILSEYKELLDLIAEL 487 Query: 462 DSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPIT 521 +L S ++ I E+ ++++ F RRT E++ A + +IE+E + Sbjct: 488 LHILGSPERLMEVIREELEKIRDEFGDE-----RRT---EITAASHDIDIEDLIEREEVV 539 Query: 522 VVISNRGWIRSLKSHSVD--------LSALHFKEGDSLKIALHAHTTDRILLLSTDG--- 570 V +S G+++ K + + SA KE D ++ L A+T D IL ST G Sbjct: 540 VTLSREGYVKYQKLNDYESQRRGGKGKSATKMKEEDFIEKLLVANTHDHILCFSTRGRLY 599 Query: 571 --KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIV 603 K Y LP L S G I ++ L N+ I Sbjct: 600 WLKVYQLP---LASRNARGRPIVNILPLEANERIT 631 >gi|315163336|gb|EFU07353.1| DNA gyrase, A subunit [Enterococcus faecalis TX0645] Length = 833 Score = 428 bits (1101), Expect = e-117, Method: Compositional matrix adjust. Identities = 268/771 (34%), Positives = 444/771 (57%), Gaps = 57/771 (7%) Query: 13 VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72 ++EN++ V+L ++E ++ YA+S I RA+PD+RDG KPVHRRI++ M+E+G+ Sbjct: 5 IKENIQDVNLTSEMKESFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 64 Query: 73 KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132 KKSARIVG+V+GK HPHGD ++Y+S+VR+AQPF R L+ G GNFG++DGD AAA RYT Sbjct: 65 KKSARIVGDVMGKYHPHGDIAIYESMVRMAQPFSYRAMLVDGHGNFGSVDGDGAAAMRYT 124 Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192 EARM+++A +L+ ++++ VDF+ Y++ + EPVV P++FPNLL NGT+GIAVGMAT+IP Sbjct: 125 EARMSKIALEMLRDINKNTVDFQGNYDDSEQEPVVLPARFPNLLVNGTTGIAVGMATNIP 184 Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252 HN+ E+ +A L+DNP+++ +L+E + GPDFPTGG+++ + I +Y G+G V Sbjct: 185 PHNLSEVIDATSLLMDNPDVTTNELMEVLPGPDFPTGGLVM-GKSGIRRAYETGKGSITV 243 Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRI 311 RA+ + E+ G I+VTE+PY V K++LIE+I+EL KRI + D+RDES+ E +RI Sbjct: 244 RAKVELTEMPNGKERILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMRI 303 Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371 V+ + R + +++ +++ ++ ++T F NM + G VP+++ L IL+ ++ H++EV Sbjct: 304 VIDVR-RDVSASVVLNNLYKMTALQTSFGFNMLAIEKG-VPKILSLKRILENYVEHQKEV 361 Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQV 428 + RR+ F + R IL+GL IA +IDEIIAIIR ++D+ K ++ RF ++ Q Sbjct: 362 ITRRTIFDKNKAEARAHILEGLRIALDHIDEIIAIIRGSQSDDEAKATLIERFEFSDRQA 421 Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488 AIL++RLR L LE +I++E LL ++ +L ++ I E+ +V+ F Sbjct: 422 QAILDMRLRRLTGLERDKIENEYQELLKFIADLEDILARPERVIEIIKTELNDVRTKFGD 481 Query: 489 STDLGRRRTTFC--EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV-------- 538 + RRT EV + + +IE+E + + ++N G+I+ + + Sbjct: 482 A-----RRTELLVGEVL----SLEDEDLIEEEEVVITLTNNGYIKRMANSEFRAQRRGGR 532 Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY---------------TLPAGNLLSG 583 + + + D +K + T D +L + GK Y +P NLL G Sbjct: 533 GVQGMGVHDDDFVKNLVSCSTHDTLLFFTNTGKVYRAKGYEIPEYGRTAKGIPVINLL-G 591 Query: 584 RGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLK 643 E IQ +I + + +++ +T K V + AF S I +N G + Sbjct: 592 IDSAEKIQAIISVEGKAE-AGKYLFFTTLKGTVKRTAVTAF----SNIRSN---GLIAIS 643 Query: 644 VSSEEKMKLVVKVTGDHVAVVGENRKL-LIFSIDQIPEMSRG----KGVRLQSYKDGGIS 698 + ++++ VV G+ ++G + + F + + +M R +G+RL+ D + Sbjct: 644 LKEDDELVNVVTTNGNQKMIIGTHAGYSVTFDENTVRDMGRTASGVRGIRLRE-NDYVVG 702 Query: 699 DVICFKICEGLTWIDSA-GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG 748 I + E L ++ G+ SE + G GK ++ K P +G Sbjct: 703 AAILDENKEVLVITENGYGKRTKASEYPVKGRGGKGIKTANITEKNGPLAG 753 >gi|147921291|ref|YP_684895.1| type II DNA topoisomerase II (gyrase), subunit A [uncultured methanogenic archaeon RC-I] gi|110620291|emb|CAJ35569.1| type II DNA topoisomerase II (gyrase), subunit A [uncultured methanogenic archaeon RC-I] Length = 826 Score = 428 bits (1101), Expect = e-117, Method: Compositional matrix adjust. Identities = 248/607 (40%), Positives = 363/607 (59%), Gaps = 35/607 (5%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 E + V + ++ Y+ YA+S I RA+PD+RDG KPVHRR ++ M E+G +KK Sbjct: 19 ETLLPVQIEEEMKRSYIDYAMSVIVGRALPDVRDGLKPVHRRCLYGMYELGNTHDKPYKK 78 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 SAR+VG+V+GK HPHGD ++YD++VR+AQ F RY L+ GQGNFG+IDGD AAA RYTE Sbjct: 79 SARVVGDVMGKYHPHGDAAIYDTIVRMAQDFSLRYTLVDGQGNFGSIDGDGAAAMRYTEV 138 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 R+ ++AE IL +D++ VDF ++E EPVV P++ PNLL NG+SGIAVGMAT+IP H Sbjct: 139 RLERIAEEILADLDKETVDFAPNFDETLKEPVVLPARLPNLLINGSSGIAVGMATNIPPH 198 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 N+ EI + +A+IDNPEI +LL Y+ GPDFPT G I +E I E+Y GRG R+RA Sbjct: 199 NLGEIVDGTIAVIDNPEIEPIELLNYVKGPDFPTAGFIY-GKEGIKEAYLTGRGSIRMRA 257 Query: 255 RW-CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIV 312 + V+E G I+VTEIPY V K+RLIE IA+L+ K+I + D+RDES D +RIV Sbjct: 258 KAEIVDE--NGKMSIIVTEIPYMVNKARLIESIADLVKDKKIEGISDLRDESDRDGMRIV 315 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 + K ++ + ++++ +F + ME+ F +N N+ + P + L + ++ HR+EV+ Sbjct: 316 IELK-KAANANVILNQLFKHTQMESTFGVN-NIALVDNTPMTLSLKETIGYFIKHRQEVV 373 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVD 429 RRS F ++ R IL GLLIA NID+ + IIR N D+ K ++ ++ L++ Q Sbjct: 374 TRRSQFELKKAQAREHILAGLLIALTNIDDFVRIIRGSANADEAKATLMEKYGLSDEQSR 433 Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489 AIL++RL L LE +I E +L+ E ++ +L S + + I E+ ++K + Sbjct: 434 AILDMRLARLTALERQKIDDERADLIKEIAHLNEVLASPQMVLDIIKAELLDMKAKYGDE 493 Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLS 541 RRT E + + + +I E + V ISN G+I R+ + V + Sbjct: 494 -----RRTKIVESA---GEIVDEDLIPVENVVVTISNTGYIKRMPVDTYRTQRRGGVGIV 545 Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL------PAGNLLSGRGHGEAIQLLID 595 + KE D + A T D IL S GK Y+L PA S + G+AI LI+ Sbjct: 546 GMETKEEDFVVDLFVASTHDNILFFSNKGKVYSLKVYEIPPAA---SRQARGKAIINLIN 602 Query: 596 LNHNQDI 602 + + I Sbjct: 603 IEPGEAI 609 >gi|237669626|ref|ZP_04529604.1| DNA gyrase, A subunit [Clostridium butyricum E4 str. BoNT E BL5262] gi|237654860|gb|EEP52422.1| DNA gyrase, A subunit [Clostridium butyricum E4 str. BoNT E BL5262] Length = 835 Score = 428 bits (1100), Expect = e-117, Method: Compositional matrix adjust. Identities = 276/764 (36%), Positives = 439/764 (57%), Gaps = 42/764 (5%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 E V V + +++ Y+ YA+S I RA+PD+RDG KPVHRRI++++ +GL ++ Sbjct: 6 EGKVIPVDINHEMKKCYIDYAMSVIVGRALPDVRDGLKPVHRRILYSLQGLGLTPEKGYR 65 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 K ARIVGEV+GK HPHGD SVYD+LVR+AQ F RY L+ G GNFG++DGDSAAA RYTE Sbjct: 66 KCARIVGEVLGKYHPHGDSSVYDALVRMAQDFSMRYMLVDGHGNFGSVDGDSAAAMRYTE 125 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 A+M ++A +L+ ++++ VDF ++ E+ EPVV PS+FPNLL NG+SGIAVGMAT+IP Sbjct: 126 AKMNKIAVEMLRDINKNTVDFMPNFDGEEQEPVVLPSRFPNLLVNGSSGIAVGMATNIPP 185 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ EI + + LIDNPE+++ L+ I GPDFPTG I+ + I +Y GRG VR Sbjct: 186 HNLGEIIDGTIMLIDNPELTVLYLMTKIQGPDFPTGATIM-GKAGIRAAYETGRGKIVVR 244 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIV 312 A +EE G IVVTEIPYQV K++LIE IA+L+ K+I + D+RDES D +RIV Sbjct: 245 ADAEIEE-ENGRHKIVVTEIPYQVNKAKLIENIADLVKDKKITGISDLRDESDRDGMRIV 303 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 + K R +P++++ ++ + ++ F + M L + P+V+ + IL ++ +++EV+ Sbjct: 304 VELK-RDANPNVVLNLLYKHTKLQDSFGVIMLAL-VNNEPRVLNIKEILSNYIDYQKEVI 361 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVD 429 RR+ F + + R IL+GL IA NIDE+I+IIR+ K ++ +F+L++ Q Sbjct: 362 TRRTVFELNKAEARAHILEGLRIALDNIDEVISIIRHSKTAEIAKNTLMEKFALSDKQAT 421 Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489 AIL +RLR L LE +I+ E L+ + E + S+L S ++ I E+ ++K +S Sbjct: 422 AILEMRLRRLTGLEREKIEEEYAELMKQIEYLKSILASEEKLLGVIKDELSDIKAKYSDE 481 Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD--------LS 541 RRT +V ++ ++ +I++E + + ++N G+I+ + + + + Sbjct: 482 -----RRTKIEKV--VNEIDIED-LIQEEDVVITLTNSGYIKRISADTYSAQRRGGKGIQ 533 Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEAIQLLIDLNHN 599 A+ KE D ++ + T +L + G+ Y L A + +GR G + LI + + Sbjct: 534 AMTTKEDDFVEHVMITSTHSDVLFFTNRGRVYKLRAYEIPDAGRQAKGTNVINLIAIEPD 593 Query: 600 QDIVTAFVYDSTCK--LLVVSSKGNAFIVEESEI--IANTRK-GKTFLKVSSEEKMKLVV 654 + I T K L +++K IV+++ I N RK G L + +++ V Sbjct: 594 EKIQTVLTVSDGKKEGFLFMATKNG--IVKKTHISEFKNLRKNGLIALSLKDNDELLKVK 651 Query: 655 KVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKIC---EGL 709 GD ++ +V +N + F+ + M R GV+ + KD ++ +C I E L Sbjct: 652 NTYGDANIMIVTQNGYAVRFNEKNVRAMGRTASGVKAINLKDDDVA--VCMDIAVDGEEL 709 Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753 I G ++ + RGGVG + K ++GK + Sbjct: 710 LVISENGFGKRTPVSEY--KVQNRGGVGLITYKISEKTGKLTGA 751 >gi|169836508|ref|ZP_02869696.1| DNA gyrase subunit A [candidate division TM7 single-cell isolate TM7a] Length = 833 Score = 428 bits (1100), Expect = e-117, Method: Compositional matrix adjust. Identities = 245/617 (39%), Positives = 377/617 (61%), Gaps = 33/617 (5%) Query: 26 LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85 +E+ + Y++S I +RA+PD+RDG KPVHRRI+++M++ G A F KSARI+G+V+GK Sbjct: 33 MEDSFFRYSMSVIIDRALPDVRDGLKPVHRRILYSMNQNGNRSNAKFVKSARIIGDVMGK 92 Query: 86 LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145 HPHGD ++YDS+VRLAQ + RY L+ GQGNFG++ GD AA+RYTEAR+ + AE +L Sbjct: 93 YHPHGDSAIYDSMVRLAQDWTMRYTLVQGQGNFGSMGGDPPAAHRYTEARLDKPAEELLA 152 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 ++++ VDFRD ++ + EP+V P+K PNLL NG GIAVGMATSIP+HN+ E+ +A + Sbjct: 153 DIEKETVDFRDNFDGSEQEPMVLPAKLPNLLLNGQVGIAVGMATSIPTHNLGELVDATVE 212 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265 LIDNPE +++ LL+++ GPDFPTG I+ + ++Y+ GRG +RA +EE RG Sbjct: 213 LIDNPEATVDDLLKHVKGPDFPTGAIVYGG-APMWQAYQTGRGSVTIRAVANIEETKRGR 271 Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE-DVRIVLFPKNRSLDPDL 324 IVVTE+PY V K+ LIEKIAEL+ K+I + D+RDESA +VR+V+ K + P Sbjct: 272 HRIVVTEMPYAVNKATLIEKIAELVKEKKITSISDLRDESARGNVRVVIELKKDAY-PKK 330 Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384 ++ ++ L+ ++T F NM L G+ P+++ L IL E++ HRR V+ RR+ F ++ + Sbjct: 331 VLNQLYKLTALQTNFHYNMLALVDGKQPRILGLRDILSEFIKHRRSVVRRRTEFELKKAE 390 Query: 385 RRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAILNLRLRSLRK 441 R IL+G IA +IDE+I IR +++ + +++RF L+E Q AIL ++LR L Sbjct: 391 ARAHILEGYKIALDHIDEVIKTIRASKTQEEAEKSLIARFGLSEIQAKAILAMQLRRLTG 450 Query: 442 LEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCE 501 LE I++EL LLA EK+ +L ++ N I E+ E+KE + D R + E Sbjct: 451 LEREAIENELRELLALIEKLKGILADEQEILNIIKNELIEMKEKYG---DQRRSKMINHE 507 Query: 502 VSRADKATLQQAMIEKEPITVVISNRGWI-RSLKSHSVDLS-------ALHFKEGDSLKI 553 + + + +I +E V++++ +I R+L S + + KE D ++ Sbjct: 508 LGKFS----DEELIPEEDSVVLLTSENYIKRTLASDYRKQNRGGKGKRGMTTKETDVIEH 563 Query: 554 ALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608 + A T D +L + G KAY +PA +L + G A L+ L + I + Sbjct: 564 MIPAGTHDWLLFFTNRGRVFRLKAYEVPAASL---QAKGVAAVNLLQLQPEEKITAIIKF 620 Query: 609 DSTCK----LLVVSSKG 621 + K L + + KG Sbjct: 621 EKDAKDDGYLFMATVKG 637 >gi|237741013|ref|ZP_04571494.1| DNA gyrase subunit A [Fusobacterium sp. 4_1_13] gi|229431057|gb|EEO41269.1| DNA gyrase subunit A [Fusobacterium sp. 4_1_13] Length = 811 Score = 428 bits (1100), Expect = e-117, Method: Compositional matrix adjust. Identities = 239/606 (39%), Positives = 376/606 (62%), Gaps = 25/606 (4%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 NV + L+E YL Y++S I RA+PD+RDG KPVHRRI+ AM+EMG+ FKKS Sbjct: 3 NVDNRYIEEELKESYLDYSMSVIVSRALPDVRDGLKPVHRRILFAMNEMGMTNDKPFKKS 62 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 ARIVGEV+GK HPHGD +VY ++VR+AQ F RY L+ G GNFG+IDGDSAAA RYTEAR Sbjct: 63 ARIVGEVLGKYHPHGDSAVYGTMVRMAQDFNYRYLLVEGHGNFGSIDGDSAAAMRYTEAR 122 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 M ++ +L+ +D++ +D+R +++ EP V P+K PNLL NG GIAVGMAT+IP HN Sbjct: 123 MEKITAELLEDIDKNTIDWRKNFDDSLDEPTVLPAKLPNLLLNGAIGIAVGMATNIPPHN 182 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 + E+ + LA+IDN +I I +L+ YI GPDFPTG II + R I+E+Y+ GRG +VR + Sbjct: 183 LGELVDGILAIIDNKDIEILELMNYIKGPDFPTGAII-DGRAGIIEAYKTGRGKIKVRGK 241 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLF 314 +EE+ G I+V+EIPYQ+ K+ LIEKIA L+ K+I + D+RDES E +RI++ Sbjct: 242 IDIEELKNGKSNIIVSEIPYQLNKANLIEKIANLVKEKKITEISDLRDESNREGIRILIE 301 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K + +P+L++ ++ +D++T F + M L + VP+V+ L +L E++ HR +V+ R Sbjct: 302 VK-KGEEPELVLNKLYKYTDLQTTFGVIMLSL-VNNVPRVLNLKEMLNEYIKHRFDVITR 359 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAI 431 R++F + ++R ILKG IA NID II +IR + ++ +++ T+ Q +I Sbjct: 360 RTAFDLDKAEKRAHILKGYQIALENIDRIIELIRASSDGTVAREQLIEKYAFTDIQARSI 419 Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491 L+++L+ L LE +I +E + A +++ +L + + + E+ E+KE ++ Sbjct: 420 LDMKLQRLTGLEREKIDTEFKEIEALIKELREVLEDNNKIYEIMKKELLELKEKYND--- 476 Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD--------LSAL 543 +R T E R + L + +I+ E I + +N+G+++ +++ +SAL Sbjct: 477 ---KRRTKIEEERME--ILPEDLIKDEEIIITYTNKGYVKRIEASKYKAQKRGGKGVSAL 531 Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQD 601 + E D + + A T D I++ + GK Y + A + LS + G + +I+L+ + Sbjct: 532 NTIEDDFAEKIISASTLDTIMVFTDKGKVYNIRAYEIPDLSKQSRGRLLSNIINLSEGEK 591 Query: 602 IVTAFV 607 + V Sbjct: 592 VRDTIV 597 >gi|256960819|ref|ZP_05564990.1| DNA gyrase A subunit [Enterococcus faecalis Merz96] gi|256951315|gb|EEU67947.1| DNA gyrase A subunit [Enterococcus faecalis Merz96] Length = 832 Score = 428 bits (1100), Expect = e-117, Method: Compositional matrix adjust. Identities = 268/771 (34%), Positives = 444/771 (57%), Gaps = 57/771 (7%) Query: 13 VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72 ++EN++ V+L ++E ++ YA+S I RA+PD+RDG KPVHRRI++ M+E+G+ Sbjct: 5 IKENIQDVNLTSEMKESFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 64 Query: 73 KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132 KKSARIVG+V+GK HPHGD ++Y+S+VR+AQPF R L+ G GNFG++DGD AAA RYT Sbjct: 65 KKSARIVGDVMGKYHPHGDIAIYESMVRMAQPFSYRAMLVDGHGNFGSVDGDGAAAMRYT 124 Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192 EARM+++A +L+ ++++ VDF+ Y++ + EPVV P++FPNLL NGT+GIAVGMAT+IP Sbjct: 125 EARMSKIALEMLRDINKNTVDFQGNYDDSEQEPVVLPARFPNLLVNGTTGIAVGMATNIP 184 Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252 HN+ E+ +A L+DNP+++ +L+E + GPDFPTGG+++ + I +Y G+G V Sbjct: 185 PHNLSEVIDATSLLMDNPDVTTNELMEVLPGPDFPTGGLVM-GKSGIRRAYETGKGSITV 243 Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRI 311 RA+ + E+ G I+VTE+PY V K++LIE+I+EL KRI + D+RDES+ E +RI Sbjct: 244 RAKVELTEMPNGKERILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMRI 303 Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371 V+ + R + +++ +++ ++ ++T F NM + G VP+++ L IL+ ++ H++EV Sbjct: 304 VIDVR-RDVSASVVLNNLYKMTALQTSFGFNMLAIEKG-VPKILSLKRILENYVEHQKEV 361 Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQV 428 + RR+ F + R IL+GL IA +IDEIIAIIR ++D+ K ++ RF ++ Q Sbjct: 362 ITRRTIFDKNKAEARAHILEGLRIALDHIDEIIAIIRGSQSDDEAKATLIERFEFSDRQA 421 Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488 AIL++RLR L LE +I++E LL ++ +L ++ I E+ +V+ F Sbjct: 422 QAILDMRLRRLTGLERDKIENEYQELLKFIADLEDILARPERVIEIIKTELNDVRTKFGD 481 Query: 489 STDLGRRRTTFC--EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV-------- 538 + RRT EV + + +IE+E + + ++N G+I+ + + Sbjct: 482 A-----RRTELLVGEVL----SLEDEDLIEEEEVVITLTNNGYIKRMANSEFRAQRRGGR 532 Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY---------------TLPAGNLLSG 583 + + + D +K + T D +L + GK Y +P NLL G Sbjct: 533 GVQGMGVHDDDFVKNLVSCSTHDTLLFFTNTGKVYRAKGYEIPEYGRTAKGIPVINLL-G 591 Query: 584 RGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLK 643 E IQ +I + + +++ +T K V + AF S I +N G + Sbjct: 592 IDSAEKIQAIISVEGKAE-AGKYLFFTTLKGTVKRTAVTAF----SNIRSN---GLIAIS 643 Query: 644 VSSEEKMKLVVKVTGDHVAVVGENRKL-LIFSIDQIPEMSRG----KGVRLQSYKDGGIS 698 + ++++ VV G+ ++G + + F + + +M R +G+RL+ D + Sbjct: 644 LKEDDELVNVVTTNGNQKMIIGTHAGYSVTFDENTVRDMGRTASGVRGIRLRE-NDYVVG 702 Query: 699 DVICFKICEGLTWIDSA-GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG 748 I + E L ++ G+ SE + G GK ++ K P +G Sbjct: 703 AAILDENKEVLVITENGYGKRTKASEYPVKGRGGKGIKTANITEKNGPLAG 753 >gi|227518103|ref|ZP_03948152.1| DNA gyrase, A subunit [Enterococcus faecalis TX0104] gi|293382657|ref|ZP_06628585.1| DNA gyrase, A subunit [Enterococcus faecalis R712] gi|293387931|ref|ZP_06632467.1| DNA gyrase, A subunit [Enterococcus faecalis S613] gi|312908809|ref|ZP_07767748.1| DNA gyrase, A subunit [Enterococcus faecalis DAPTO 512] gi|312979549|ref|ZP_07791231.1| DNA gyrase, A subunit [Enterococcus faecalis DAPTO 516] gi|227074437|gb|EEI12400.1| DNA gyrase, A subunit [Enterococcus faecalis TX0104] gi|291079963|gb|EFE17327.1| DNA gyrase, A subunit [Enterococcus faecalis R712] gi|291082668|gb|EFE19631.1| DNA gyrase, A subunit [Enterococcus faecalis S613] gi|310625247|gb|EFQ08530.1| DNA gyrase, A subunit [Enterococcus faecalis DAPTO 512] gi|311287731|gb|EFQ66287.1| DNA gyrase, A subunit [Enterococcus faecalis DAPTO 516] Length = 833 Score = 428 bits (1100), Expect = e-117, Method: Compositional matrix adjust. Identities = 268/771 (34%), Positives = 444/771 (57%), Gaps = 57/771 (7%) Query: 13 VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72 ++EN++ V+L ++E ++ YA+S I RA+PD+RDG KPVHRRI++ M+E+G+ Sbjct: 5 IKENIQDVNLTSEMKESFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 64 Query: 73 KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132 KKSARIVG+V+GK HPHGD ++Y+S+VR+AQPF R L+ G GNFG++DGD AAA RYT Sbjct: 65 KKSARIVGDVMGKYHPHGDIAIYESMVRMAQPFSYRAMLVDGHGNFGSVDGDGAAAMRYT 124 Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192 EARM+++A +L+ ++++ VDF+ Y++ + EPVV P++FPNLL NGT+GIAVGMAT+IP Sbjct: 125 EARMSKIALEMLRDINKNTVDFQGNYDDSEQEPVVLPARFPNLLVNGTTGIAVGMATNIP 184 Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252 HN+ E+ +A L+DNP+++ +L+E + GPDFPTGG+++ + I +Y G+G V Sbjct: 185 PHNLSEVIDATSLLMDNPDVTTNELMEVLPGPDFPTGGLVM-GKSGIRRAYETGKGSITV 243 Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRI 311 RA+ + E+ G I+VTE+PY V K++LIE+I+EL KRI + D+RDES+ E +RI Sbjct: 244 RAKVELTEMPNGKERILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMRI 303 Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371 V+ + R + +++ +++ ++ ++T F NM + G VP+++ L IL+ ++ H++EV Sbjct: 304 VIDVR-RDVSASVVLNNLYKMTALQTSFGFNMLAIEKG-VPKILSLKRILENYVEHQKEV 361 Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQV 428 + RR+ F + R IL+GL IA +IDEIIAIIR ++D+ K ++ RF ++ Q Sbjct: 362 ITRRTIFDKNKAEARAHILEGLRIALDHIDEIIAIIRGSQSDDEAKATLIERFEFSDRQA 421 Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488 AIL++RLR L LE +I++E LL ++ +L ++ I E+ +V+ F Sbjct: 422 QAILDMRLRRLTGLERDKIENEYQELLKFIADLEDILARPERVIEIIKTELNDVRTKFGD 481 Query: 489 STDLGRRRTTFC--EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV-------- 538 + RRT EV + + +IE+E + + ++N G+I+ + + Sbjct: 482 A-----RRTELLVGEVL----SLEDEDLIEEEEVVITLTNNGYIKRMANSEFRAQRRGGR 532 Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY---------------TLPAGNLLSG 583 + + + D +K + T D +L + GK Y +P NLL G Sbjct: 533 GVQGMGVHDDDFVKNLVSCSTHDTLLFFTNTGKVYRAKGYEIPEYGRTAKGIPVINLL-G 591 Query: 584 RGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLK 643 E IQ +I + + +++ +T K V + AF S I +N G + Sbjct: 592 IDSAEKIQAIISVEGKAE-AGKYLFFTTLKGTVKRTAVTAF----SNIRSN---GLIAIS 643 Query: 644 VSSEEKMKLVVKVTGDHVAVVGENRKL-LIFSIDQIPEMSRG----KGVRLQSYKDGGIS 698 + ++++ VV G+ ++G + + F + + +M R +G+RL+ D + Sbjct: 644 LKEDDELVNVVTTNGNQKMIIGTHAGYSVTFDENTVRDMGRTASGVRGIRLRE-NDYVVG 702 Query: 699 DVICFKICEGLTWIDSA-GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG 748 I + E L ++ G+ SE + G GK ++ K P +G Sbjct: 703 AAILDENKEVLVITENGYGKRTKASEYPVKGRGGKGIKTANITEKNGPLAG 753 >gi|158319066|ref|YP_001511573.1| DNA gyrase, A subunit [Alkaliphilus oremlandii OhILAs] gi|158139265|gb|ABW17577.1| DNA gyrase, A subunit [Alkaliphilus oremlandii OhILAs] Length = 819 Score = 428 bits (1100), Expect = e-117, Method: Compositional matrix adjust. Identities = 252/668 (37%), Positives = 404/668 (60%), Gaps = 33/668 (4%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 N+ +++ ++ Y+ Y++S I RA+PD+RDG KPVHRRI+++M E+G+ KKS Sbjct: 7 NIVPINIEKEMKNSYIDYSMSVIVGRALPDVRDGLKPVHRRILYSMIELGITPDKPHKKS 66 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 ARIVG+V+GK HPHGD +VYD++VRLAQ F RY L+ G GNFG++DGD AAA RYTEAR Sbjct: 67 ARIVGDVLGKYHPHGDTAVYDAMVRLAQDFSMRYMLVDGHGNFGSVDGDGAAAMRYTEAR 126 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 ++++A +++ +++D VD+R ++E EP V PSKFPNLL NG++GIAVGMAT+IP HN Sbjct: 127 LSKMAMEMIRDINKDTVDYRPNFDESLKEPSVLPSKFPNLLVNGSNGIAVGMATNIPPHN 186 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 + E+ + + LIDN E +E L+E+I GPDFPT I+ + E I E+Y GRG +VRA+ Sbjct: 187 LGEVIDGVVTLIDNSEAQVEDLMEHIKGPDFPTAATIMGT-EGIKEAYTTGRGRIKVRAK 245 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLF 314 +EEV +G I++TEIPYQV K+RLIEKIAEL+ K++ + D+RDES E +RIV+ Sbjct: 246 ASIEEVNKGRQQIIITEIPYQVNKARLIEKIAELVRDKKVEGISDLRDESDREGMRIVIE 305 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K R + ++++ ++ + +E F + M + G P+V+ L +L +L H+++++ R Sbjct: 306 LK-RDANANVVLNKLYKHTQLEDTFGVIMLAIVNGE-PKVLNLKEVLTHYLDHQKDIITR 363 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAI 431 R+ F + + R IL+GL IA N+DE+I +IR N K ++ F+L+E Q AI Sbjct: 364 RTQFDLNKAEERAHILEGLKIAIDNLDEVIKLIRGSENTQIAKTGLMETFTLSEKQAQAI 423 Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491 L++RL+ L LE +++ E ++L+ +L + + N I E+ E+KE + Sbjct: 424 LDMRLQKLTGLEIEKVEEEYEDLIKLINHFKEILANERLMLNIIKDELIEIKEKYGDE-- 481 Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD--------LSAL 543 RRT E++RA + MI +E + + +++ G+I+ L + + ++AL Sbjct: 482 ---RRT---EITRAIGEINIEDMITEEEVVITLTHFGYIKRLPADTYKSQKRGGKGIAAL 535 Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQD 601 +E D ++ + + + D +L + G+ Y L + R G AI LI L+ N+ Sbjct: 536 TTREEDFVENLITSSSHDYLLFFTNFGRVYKLNVYEIPEARRQAKGTAIVNLIPLSPNET 595 Query: 602 IVTAF----VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV-VKV 656 + +DS K LV+++K + +TRK + +S E +L+ VK+ Sbjct: 596 VAATIPVGRQFDS--KYLVLATKNGIIKKTQLSQFESTRKS-GLIAISIREDDELIKVKL 652 Query: 657 TGDHVAVV 664 T + ++ Sbjct: 653 TDEDSEII 660 >gi|15839141|ref|NP_299829.1| DNA gyrase subunit A [Xylella fastidiosa 9a5c] gi|9107763|gb|AAF85349.1|AE004062_4 DNA gyrase subunit A [Xylella fastidiosa 9a5c] Length = 893 Score = 428 bits (1100), Expect = e-117, Method: Compositional matrix adjust. Identities = 279/768 (36%), Positives = 411/768 (53%), Gaps = 82/768 (10%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 V+L + + YL YA+S I RA+PD RDG KPVHRR+++AM E+G ++ KSARI+ Sbjct: 11 VNLEDEMRKSYLDYAMSVIVGRALPDARDGMKPVHRRVLYAMHELGAHSDKSYFKSARII 70 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 GEV+GK HPHGDQSVYD+LVR+AQPF RY L+ GQGNFG++DGD AAA RYTE+RM+++ Sbjct: 71 GEVLGKYHPHGDQSVYDTLVRMAQPFSLRYLLVEGQGNFGSVDGDPAAAMRYTESRMSRI 130 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 + ++ +D++ VDF+ Y+E+++EP V P++FPNLL NG+SGIAVGMAT+IP HN+ E Sbjct: 131 SHDLMADIDKETVDFQPNYDEKETEPTVMPTRFPNLLVNGSSGIAVGMATNIPPHNLVES 190 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 A +ALIDNPE+ ++ L+EYI GPDFPT GII IV YR GRG R+RA+ +E Sbjct: 191 INACIALIDNPELDVDGLMEYIPGPDFPTAGII-NGTAGIVAGYRTGRGRVRMRAKADIE 249 Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319 G IVVTEIPYQV K+RLIEKIAEL+ KRI + ++RDES +D + R Sbjct: 250 VADNGREAIVVTEIPYQVNKARLIEKIAELVKEKRIDGISELRDESDKDGMRIYIEIKRG 309 Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379 ++++ +++ + ME+ F +NM L GR PQ++ L IL+ ++ HRREV+ RR+ F Sbjct: 310 ESAEVVLNNLYQQTQMESVFGINMVALVDGR-PQLLNLKQILQAFIRHRREVVTRRTIFE 368 Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAII-------------------------------- 407 ++ R +L+GL +A NIDE+I +I Sbjct: 369 LRKARARAHVLEGLTVALANIDEMIHLIKTSPSPQEAKERLLAKTWAPGLVGTLLSASGG 428 Query: 408 ---RNEDKPKPVMV--SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKID 462 R ED P+ V + + LTE QV IL +RL L LE+ ++ E LL + Sbjct: 429 EASRPEDLPQGVGLIGDSYQLTEVQVRQILEMRLHRLTGLEQDKLAEEYQQLLEIIVGLI 488 Query: 463 SLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITV 522 +L + I E+ +++E + G R T S D L +I E + V Sbjct: 489 RILENPDVLLQVIRDELLKIREEY------GDVRRTEIRHSEEDLDILD--LIAPEDVVV 540 Query: 523 VISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGK--- 571 +S+ G+ R+ K +A+ KE D + +T D +L ++ GK Sbjct: 541 TLSHAGYAKRQPVSAYRAQKRGGRGRAAVTTKEEDFIDHLWLVNTHDTLLTFTSTGKVFW 600 Query: 572 --AYTLP-AGNLLSGRG--------HGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSK 620 Y LP AG+ GR GE +Q ++ + Y + + + Sbjct: 601 LSVYQLPEAGSNARGRPIINWIPLEPGEKVQAVLPVRE---------YAENHYVFFATRQ 651 Query: 621 GNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIP 679 G SE +GK + + + + V G+ V + N K + FS + + Sbjct: 652 GTVKKTPLSEFAFRLARGKIAINLDQGDALIGVALTDGERDVLLFASNGKTVRFSENTVR 711 Query: 680 EMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDL 726 M R GVR +G +V+ I E T +D + +++D+ Sbjct: 712 SMGRTATGVRGIKLTEG--EEVVSLIIAEPATGVDMLEEAEETADDDI 757 >gi|190575028|ref|YP_001972873.1| DNA gyrase subunit A [Stenotrophomonas maltophilia K279a] gi|190012950|emb|CAQ46582.1| putative DNA gyrase subunit A [Stenotrophomonas maltophilia K279a] Length = 904 Score = 428 bits (1100), Expect = e-117, Method: Compositional matrix adjust. Identities = 287/768 (37%), Positives = 414/768 (53%), Gaps = 90/768 (11%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 V+L + + YL YA+S I RA+PD RDG KPVHRR++ AM+E+ + KSARIV Sbjct: 11 VNLEDEMRKSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMNELNAHSNKPYFKSARIV 70 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGDQSVYD+LVRLAQPF RY L+ GQGNFG+IDGDSAAA RYTEARM+++ Sbjct: 71 GDVIGKYHPHGDQSVYDTLVRLAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEARMSRL 130 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A ++ +D++ VDF+ Y+E++ EP V P++FPNLL NG++GIAVGMAT+IP HN+ E Sbjct: 131 AHELMADIDKETVDFQPNYDEKELEPTVMPTRFPNLLVNGSAGIAVGMATNIPPHNLSES 190 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 A +ALIDNPEI ++ L+EYI GPDFPT GII IV YR GRG R+RA+ +E Sbjct: 191 INACIALIDNPEIDVDGLMEYIPGPDFPTAGII-NGTAGIVAGYRTGRGRVRIRAKADIE 249 Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319 G I+VTEIPYQV K+RLIEKIAEL+ K+I + ++RDES +D + R Sbjct: 250 VADNGRESIIVTEIPYQVNKARLIEKIAELVKEKKIEGISELRDESDKDGMRIYIEIKRG 309 Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379 ++++ +++ + ME+ F +NM L GR PQ+M L +L+ ++ HRREV+ RR+ F Sbjct: 310 ESAEVVLNNLYQQTQMESVFGINMVALVDGR-PQLMNLKQMLEAFVRHRREVVTRRTVFE 368 Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAII-------------------------------- 407 ++ R +L+GL +A NIDE+I +I Sbjct: 369 LRKARARAHVLEGLTVALANIDEMIELIKTSPNPNEARERMLARVWEPGLVGAMLGAAGA 428 Query: 408 ---RNEDKPKPV--MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKID 462 R ED PK V + + LTE Q IL +RL L LE+ ++ E LL E I Sbjct: 429 EASRPEDLPKGVGLIEGGYQLTEIQATQILEMRLHRLTGLEQDRLTDEYKQLL---EVIA 485 Query: 463 SLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITV 522 L++ + +++ IRE E+ S + G R T S D L +I E + V Sbjct: 486 GLIHI-LEDPDRLLQVIRE--ELVSVKAEFGDERRTEIRHSEEDLDILD--LIAPEDVVV 540 Query: 523 VISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT 574 +S+ G+++ + + SA KE D ++ +T D +L ++ GK + Sbjct: 541 TVSHAGYVKRQPVSVYRAQRRGGRGRSAAATKEEDFIEQLWLVNTHDTLLTFTSSGKVFW 600 Query: 575 LP------AGNLLSGRG--------HGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSK 620 LP AG+ GR GE +Q ++ + D FV+ +T V + Sbjct: 601 LPVYQLPEAGSNARGRPIINWIPLEPGERVQAVLPVRDYAD--GQFVFFATKNGTVKKTP 658 Query: 621 GN--AFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQI 678 AF + +I N +G + V + + + + N K + F D++ Sbjct: 659 LGEFAFRLARGKIAINLDEGDALVGVGLTDGQR--------DILLFASNGKTVRFGEDKV 710 Query: 679 PEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSEND 725 M R GVR G +V+ + E SAG + +E+D Sbjct: 711 RSMGRTATGVRGIKMPAG--EEVVSLIVAE------SAGGIEDENEDD 750 >gi|57505476|ref|ZP_00371404.1| DNA gyrase, A subunit [Campylobacter upsaliensis RM3195] gi|57016301|gb|EAL53087.1| DNA gyrase, A subunit [Campylobacter upsaliensis RM3195] Length = 852 Score = 428 bits (1100), Expect = e-117, Method: Compositional matrix adjust. Identities = 240/607 (39%), Positives = 381/607 (62%), Gaps = 32/607 (5%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 + + + + + +++ YL Y++S I RA+PD RDG KPVHRRI++AM+++G+ +A+K Sbjct: 8 DSDTQLIDIEDSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMNDLGVGSRSAYK 67 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSARIVG+VIGK HPHGD +VYD+LVR+AQ F RYP + GQGNFG+IDGD AAA RYTE Sbjct: 68 KSARIVGDVIGKYHPHGDTAVYDALVRMAQSFSMRYPSVDGQGNFGSIDGDGAAAMRYTE 127 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 ARMT +AE +L+ +D+D VDF Y++ EP V PS+ PNLL NG+SGIAVGMAT+IP Sbjct: 128 ARMTILAEELLRDIDKDTVDFVPNYDDSMQEPDVLPSRVPNLLLNGSSGIAVGMATNIPP 187 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 H++ E+ + L L+DN E S+E+++++I GPDFPT GII ++ I+++YR GRG ++R Sbjct: 188 HSLNELVDGLLYLLDNKEASLEEIMQFIKGPDFPTAGIIY-GKKGIIDAYRTGRGRIKIR 246 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIV 312 A+ +E+ IV+ E+PYQ K+RLIE+IAEL+ K+I + ++RDES E +R+V Sbjct: 247 AKTHIEKRANKD-IIVIDELPYQTNKARLIEQIAELVKEKQIEGIAEVRDESDREGIRVV 305 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 + K ++ ++++ ++F + ME+ F + M + + P++ L +L +L HR+ V+ Sbjct: 306 IELKRDAM-SEIVLNNLFKSTTMESTFGVIMLAIH-NKEPKIFSLIELLNLFLTHRKTVI 363 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLTENQVD 429 RR+ + +Q R IL+GL IA NIDE+IA+I+N + + +V++F L+E Q + Sbjct: 364 IRRTIYELQKARARAHILEGLKIALDNIDEVIALIKNSADNNAAREGLVAKFGLSELQAN 423 Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489 AIL+++L L LE +I++EL LL E ++D +L S + I E++E+K F Sbjct: 424 AILDMKLGRLTGLEREKIENELAELLKEIARLDEILKSEALLEDLIREELKEIKAKF--- 480 Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS-------- 541 D+ R ++ + +I E + V I++RG+I+ + S + Sbjct: 481 -DVPR----ITQIEDDYDDIDVEDLIPNENMVVTITHRGYIKRVPSKQYEKQKRGGKGKL 535 Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDL 596 A+ + D ++ A+T D ++ ++ G K Y +P G S G+A+ LI+L Sbjct: 536 AVTTYDDDFIESFFTANTHDTLMFVTDKGQLYWLKVYKIPEG---SRTAKGKAVVNLINL 592 Query: 597 NHNQDIV 603 + I+ Sbjct: 593 QAEEKIM 599 >gi|4886573|dbj|BAA77788.1| DNA gyrase [Vibrio parahaemolyticus] Length = 878 Score = 428 bits (1100), Expect = e-117, Method: Compositional matrix adjust. Identities = 271/725 (37%), Positives = 412/725 (56%), Gaps = 64/725 (8%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + V++ L YL YA+S I RA+PD+RDG KPVHRR++ AM+ +G D+ +KKSA Sbjct: 8 ITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSA 67 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG+IDGDSAAA RYTE RM Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVRM 127 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 ++A +L +D++ VD+ Y+ + P V P+K PNLL NG SGIAVGMAT+IP HN+ Sbjct: 128 AKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGASGIAVGMATNIPPHNL 187 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ + LA I+N EI+I++L++YI GPDFP +I R+ IV++Y+ GRG +R++ Sbjct: 188 GEVIDGCLAYINNEEITIDELMDYIPGPDFPAAALI-SGRKGIVDAYKTGRGKIYMRSKA 246 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFP 315 +E G I+VTEIPYQV K+RLIEKIAEL+ K++ + +RDES +D +RIV+ Sbjct: 247 EIETEKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIEC 306 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 K R ++++ +++ + ++T F +NM L+ G+ PQ+ L +LK ++ HRREV+ RR Sbjct: 307 K-RDAVGEVVLNNLYAQTQLQTTFGINMVALNNGQ-PQLFNLKDMLKCFVDHRREVVTRR 364 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR------------ 420 + F ++ R IL+GL +A NIDEII +IR P K +++R Sbjct: 365 TIFELRKARERAHILEGLALALANIDEIIDLIRKAPTPAEAKAGLIARGWDLGNVAAMLE 424 Query: 421 ----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458 + LTE Q AIL+LRL L LE +I +E LL E Sbjct: 425 RAGTDAARPEWLEPQYGIRDGQYFLTEQQAQAILDLRLHKLTGLEHEKILAEYKELLEEI 484 Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518 ++ +L S ++ I E+ V++ F+ + RRT E++ A + +I +E Sbjct: 485 AELMHILASTERLMEVIREELEAVRDGFADA-----RRT---EITAASHDIDMEELIARE 536 Query: 519 PITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570 + V +S+ G+++ + + SA K+ D ++ L A+T D IL ST G Sbjct: 537 DVVVTLSHEGYVKYQILSDYEAQRRGGKGKSATRMKDEDYIERLLVANTHDNILCFSTRG 596 Query: 571 KAYTLPAGNL-LSGR-GHGEAIQLLIDLNHNQDIVTAFVYDS-TCKLLVVSSKGNAFIVE 627 K Y L L L+ R G+ I ++ L + I D + + + G+ + + Sbjct: 597 KTYRLKVYQLPLASRTARGKPIVNILPLEDGERITAILPVDEFSADKFIFMATGDGTVKK 656 Query: 628 ES-EIIANTR-KGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR- 683 S + AN R G + + ++ + V TG + + + K++ FS D++ M R Sbjct: 657 TSLDQFANVRSNGLIAVNLRDDDSLIGVDITTGSSDIMLFSKAGKVVRFSEDKVRAMGRT 716 Query: 684 GKGVR 688 GVR Sbjct: 717 AAGVR 721 >gi|323703935|ref|ZP_08115565.1| DNA gyrase, A subunit [Desulfotomaculum nigrificans DSM 574] gi|323531093|gb|EGB21002.1| DNA gyrase, A subunit [Desulfotomaculum nigrificans DSM 574] Length = 820 Score = 428 bits (1100), Expect = e-117, Method: Compositional matrix adjust. Identities = 231/562 (41%), Positives = 354/562 (62%), Gaps = 22/562 (3%) Query: 26 LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85 ++ YL YA+S I RA+PD+RDG KPVHRRI++++ E+GL F+KSA IVG+V+ Sbjct: 17 MKNSYLDYAMSVIVGRALPDVRDGLKPVHRRILYSLHELGLTPDKPFRKSAGIVGKVMQD 76 Query: 86 LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145 HPHGD ++YDS+VRLAQ F RYPLI G GNFG+IDGD AA RYTEARM ++ +L Sbjct: 77 FHPHGDMAIYDSMVRLAQDFSSRYPLIEGHGNFGSIDGDPPAAMRYTEARMAKITLEMLA 136 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 +D++ VDF Y+ EPV+ P+K PNLL NG+SGIAVGMAT+IP HN+ E+ + + Sbjct: 137 DIDKETVDFAPNYDNRTKEPVILPAKIPNLLINGSSGIAVGMATNIPPHNIGEVIDGVIM 196 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265 +IDNP ++ ++L++ I GPDFPTG I+ R+ I +YR GRG ++RA+ +E G Sbjct: 197 MIDNPNVTPDELMKVIKGPDFPTGAKIM-GRDGIRAAYRTGRGSIKIRAQATIETKNNGR 255 Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFPKNRSLDPDL 324 I+V EIP+QV K++L+EKIAEL+ K+I + D+RDES +RIV+ K + +P++ Sbjct: 256 SAIIVNEIPFQVNKAKLVEKIAELVKDKKIEGISDLRDESDRRGMRIVIELK-KDANPNV 314 Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384 ++ ++ + M+ F + M L + P+V+ L +L +L H+++V+ RR+ + ++ + Sbjct: 315 ILNQLYKFTQMQESFGIIMLAL-VNNQPKVLNLAQVLFYYLEHQKDVITRRTKYELKKAE 373 Query: 385 RRVEILKGLLIAYLNIDEIIAII---RNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRK 441 R I++GL IA ++DE+I II R ++ K +V+ F+LTE Q +AI+ +RLRSL Sbjct: 374 ARAHIVEGLRIALAHLDEVIKIIRESRTTEEAKQGLVTNFNLTEVQAEAIVEMRLRSLTG 433 Query: 442 LEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCE 501 LE +++ E +LLA+ + + S+L K+ I E+ EVK+ F+ RRT Sbjct: 434 LEVEKLEKEYKDLLAKIDYLRSVLADEKKVLGIIKDELTEVKKKFADP-----RRTVISN 488 Query: 502 VSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKI 553 + D + +I++E + V I+N+G+I RS + ++A+ KE D +K Sbjct: 489 EAAGDFDI--EDLIDEEGMVVTITNQGYIKRISLDTYRSQRRGGKGITAMGTKEEDFVKH 546 Query: 554 ALHAHTTDRILLLSTDGKAYTL 575 A T +L + GKAY L Sbjct: 547 LFVASTHHYLLFFTNQGKAYRL 568 >gi|298529210|ref|ZP_07016613.1| DNA gyrase, A subunit [Desulfonatronospira thiodismutans ASO3-1] gi|298510646|gb|EFI34549.1| DNA gyrase, A subunit [Desulfonatronospira thiodismutans ASO3-1] Length = 813 Score = 428 bits (1100), Expect = e-117, Method: Compositional matrix adjust. Identities = 244/620 (39%), Positives = 377/620 (60%), Gaps = 29/620 (4%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 +S+ +++ YL Y+LS I RAIPD+RDG KPVHRRI++AM E+G + +KKSAR+V Sbjct: 4 ISIEQEIKKSYLEYSLSVIIGRAIPDVRDGLKPVHRRILYAMHELGNTYNRPYKKSARVV 63 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGD +VYD+LVR+AQ F R PL+ GQGNFG+IDGD+ AA RYTEARM+++ Sbjct: 64 GDVIGKYHPHGDSAVYDALVRMAQDFNMRDPLVDGQGNFGSIDGDAPAAMRYTEARMSRL 123 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A L ++++ V+FR Y+ +EP V P++ PN+L NG+SGIAVGMAT+IP HN+ E+ Sbjct: 124 AGEFLADIEKNTVNFRANYDNTLTEPEVLPARVPNILVNGSSGIAVGMATNIPPHNLGEV 183 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 +A L L+DNPE +I +L+++I PD PTG I + ++E+YR GRG F++R+R VE Sbjct: 184 IDALLQLLDNPETNISQLMQHIKAPDLPTGAYIYNLK-GVLEAYRTGRGSFKIRSRLDVE 242 Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKNR 318 RG IV+ E+PY + K+ L+EKIA L+ K+I + D+RDES + +RIV+ K Sbjct: 243 TRSRGHESIVINEVPYALNKANLVEKIAGLVNDKKIEGISDLRDESDRNGIRIVIDLKKG 302 Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378 ++ D+++ ++ L+ +ET F +NM + R PQ++ L +L+ +L HR+EV+ RRS Sbjct: 303 AIS-DVIINKLYKLTALETSFGINMMAVVNNR-PQLLNLKQVLEYFLEHRKEVILRRSRH 360 Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAILNLR 435 ++ + R IL+GL IA NIDE++ +IR+ + + ++S FSL++ Q AIL++R Sbjct: 361 DLEKAEHRAHILEGLQIALDNIDEVVRLIRSSSTGAEAREKLISNFSLSQVQAQAILDMR 420 Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495 L+ L +E ++ E LL + E + S+L + +I E++E+K+ +S R Sbjct: 421 LQRLTNMEREKLMQEYRELLQQIEFLKSILENIDILKGEIKKELQEIKKTYSTP-----R 475 Query: 496 RTTFCEVSRADKATLQQA-MIEKEPITVVISNRGWI-RSL-------KSHSVDLSALHFK 546 RT E D +++ +I + V +S G+I R+L K ++ + Sbjct: 476 RTQILE---QDPDSIEMLDLIPDHDVVVTLSRNGYIKRTLLEYYHQQKRGGKGIAGANVG 532 Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVT 604 + D + I L S GK+Y L A + G G I+ L+ L++ + I T Sbjct: 533 DKDFITTLFTTSNHKDIYLFSNTGKSYLLKAYEIPEGSRTARGVHIKNLLPLDNEEYIAT 592 Query: 605 AFV---YDSTCKLLVVSSKG 621 A + L V+ KG Sbjct: 593 ALSERNFHQRHYFLFVTKKG 612 >gi|71275186|ref|ZP_00651473.1| DNA gyrase, subunit A [Xylella fastidiosa Dixon] gi|71899824|ref|ZP_00681974.1| DNA gyrase, subunit A [Xylella fastidiosa Ann-1] gi|170731177|ref|YP_001776610.1| DNA gyrase subunit A [Xylella fastidiosa M12] gi|71163995|gb|EAO13710.1| DNA gyrase, subunit A [Xylella fastidiosa Dixon] gi|71730415|gb|EAO32496.1| DNA gyrase, subunit A [Xylella fastidiosa Ann-1] gi|167965970|gb|ACA12980.1| DNA gyrase subunit A [Xylella fastidiosa M12] Length = 893 Score = 428 bits (1100), Expect = e-117, Method: Compositional matrix adjust. Identities = 279/768 (36%), Positives = 411/768 (53%), Gaps = 82/768 (10%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 V+L + + YL YA+S I RA+PD RDG KPVHRR+++AM E+G ++ KSARI+ Sbjct: 11 VNLEDEMRKSYLDYAMSVIVGRALPDARDGMKPVHRRVLYAMHELGAHSDKSYFKSARII 70 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 GEV+GK HPHGDQSVYD+LVR+AQPF RY L+ GQGNFG++DGD AAA RYTE+RM+++ Sbjct: 71 GEVLGKYHPHGDQSVYDTLVRMAQPFSLRYLLVEGQGNFGSVDGDPAAAMRYTESRMSRI 130 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 + ++ +D++ VDF+ Y+E+++EP V P++FPNLL NG+SGIAVGMAT+IP HN+ E Sbjct: 131 SHDLIADIDKETVDFQPNYDEKETEPTVMPTRFPNLLVNGSSGIAVGMATNIPPHNLVES 190 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 A +ALIDNPE+ ++ L+EYI GPDFPT GII IV YR GRG R+RA+ +E Sbjct: 191 INACIALIDNPELDVDGLMEYIPGPDFPTAGII-NGTAGIVAGYRTGRGRVRMRAKADIE 249 Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319 G IVVTEIPYQV K+RLIEKIAEL+ KRI + ++RDES +D + R Sbjct: 250 VADNGREAIVVTEIPYQVNKARLIEKIAELVKEKRIDGISELRDESDKDGMRIYIEVKRG 309 Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379 ++++ +++ + ME+ F +NM L GR PQ++ L IL+ ++ HRREV+ RR+ F Sbjct: 310 ESAEVVLNNLYQQTQMESVFGINMVALVDGR-PQLLNLKQILQAFIRHRREVVTRRTIFE 368 Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAII-------------------------------- 407 ++ R +L+GL +A NIDE+I +I Sbjct: 369 LRKARARAHVLEGLTVALANIDEMIHLIKTSPSPQEAKERLLAKTWAPGLVGTLLSASGG 428 Query: 408 ---RNEDKPKPVMV--SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKID 462 R ED P+ V + + LTE QV IL +RL L LE+ ++ E LL + Sbjct: 429 EASRPEDLPQGVGLIGDSYQLTEVQVRQILEMRLHRLTGLEQDKLAEEYQQLLEIIVGLI 488 Query: 463 SLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITV 522 +L + I E+ +++E + G R T S D L +I E + V Sbjct: 489 RILENPDVLLQVIRDELLKIREEY------GDVRRTEIRHSEEDLDILD--LIAPEDVVV 540 Query: 523 VISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGK--- 571 +S+ G+ R+ K +A+ KE D + +T D +L ++ GK Sbjct: 541 TLSHAGYAKRQPVSAYRAQKRGGRGRAAVTTKEEDFIDHLWLVNTHDTLLTFTSTGKVFW 600 Query: 572 --AYTLP-AGNLLSGRG--------HGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSK 620 Y LP AG+ GR GE +Q ++ + Y + + + Sbjct: 601 LSVYQLPEAGSNARGRPIINWIPLEPGEKVQAVLPVRE---------YAENHYVFFATRQ 651 Query: 621 GNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIP 679 G SE +GK + + + + V G+ V + N K + FS + + Sbjct: 652 GTVKKTPLSEFAFRLARGKIAINLDQGDALIGVALTDGERDVLLFASNGKTVRFSENTVR 711 Query: 680 EMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDL 726 M R GVR +G +V+ I E T +D + +++D+ Sbjct: 712 SMGRTATGVRGIKLTEG--EEVVSLIIAEPATGVDMLEEAEETADDDI 757 >gi|257789785|ref|YP_003180391.1| DNA gyrase, A subunit [Eggerthella lenta DSM 2243] gi|257473682|gb|ACV54002.1| DNA gyrase, A subunit [Eggerthella lenta DSM 2243] Length = 932 Score = 428 bits (1100), Expect = e-117, Method: Compositional matrix adjust. Identities = 241/599 (40%), Positives = 354/599 (59%), Gaps = 23/599 (3%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 V++ L ++ +L YA+S I RA+PD+RDG KPVHRRI++AM+E G KSA Sbjct: 86 VRSAYLGKEMQTSFLEYAMSVIVSRALPDVRDGLKPVHRRILYAMNESGYTPNRPHMKSA 145 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R VG+VIGK HPHGD +VYD++VRLAQPF R PL+ G GNFG+IDGD AAA RYTE+R+ Sbjct: 146 RTVGDVIGKYHPHGDSAVYDTMVRLAQPFSMRVPLVDGHGNFGSIDGDGAAAMRYTESRL 205 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 +VA +L+ +D++ VDF+ Y+E EP V P++FPNLL NG+ GIAVGMAT+IP HN+ Sbjct: 206 DKVAMELLRDLDKETVDFQPNYDESLEEPTVLPARFPNLLVNGSQGIAVGMATNIPPHNL 265 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E +A ++DNP+++ E+L++ + GPDFPTGGII+ ++ I ++Y GRG VRA+ Sbjct: 266 GETIDATCLMLDNPDVTTEELMKALPGPDFPTGGIIM-GKKGIRDAYETGRGSLTVRAKC 324 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316 VEE G IVVTEIPYQV + RL+EK+ EL+ K++P + +I D + ++ Sbjct: 325 KVEEGKNGRSSIVVTEIPYQVNRQRLLEKLGELVREKKLPEISNIHDGADRHGIDIIIDL 384 Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376 + P +++ ++ + ++ F + M L G P+V+ L +L ++AH+ EV+ RR+ Sbjct: 385 KKDAIPQVVLNKLYKHTQLQVGFGVIMLSLVDG-APRVLSLKEMLHYYIAHQEEVIVRRT 443 Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVDAILN 433 + + + R IL+GL+IA NIDE+I IIR+ K M RF LT+ Q AIL Sbjct: 444 RYELAKAEERAHILEGLIIALDNIDEVIHIIRSSQTDKEAAERMTERFGLTDKQTAAILE 503 Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493 +RLR L LE +I+ EL LL + +L+ + + I E+ EVK+ F Sbjct: 504 MRLRRLTGLEHQKIEDELKELLEKIAYFKRVLSDDQLVHDIIKEELSEVKKKFGSP---- 559 Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSVDLSALHF 545 RRT E A K + +I +E + V ++ G+++ L K +S ++ Sbjct: 560 -RRTLLSE---AAKDLDVEDLIAEESMVVTMTKAGYVKRLPVATYRQQKRGGKGMSGVNL 615 Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDI 602 K+ D ++ A T +L ST GK Y L L H G AI L+ L + I Sbjct: 616 KDNDYVEHLFVASTHSYMLFFSTKGKVYRLKVYELPEASRHARGTAIVNLLPLEKGETI 674 >gi|108802862|ref|YP_642799.1| DNA gyrase subunit A [Rubrobacter xylanophilus DSM 9941] gi|108764105|gb|ABG02987.1| DNA gyrase subunit A [Rubrobacter xylanophilus DSM 9941] Length = 852 Score = 428 bits (1100), Expect = e-117, Method: Compositional matrix adjust. Identities = 242/623 (38%), Positives = 375/623 (60%), Gaps = 27/623 (4%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 N++ S+ + +L+YA+S I RA+PD+RDG KPVHRR+++AM ++GL ++KS Sbjct: 8 NIQPHSIEDEIRSSFLSYAMSVIVSRALPDVRDGLKPVHRRVLYAMHDLGLQPNRPYRKS 67 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 A +VGEVIGK HPHGD +VYD+LVRLAQ F R+PL+ GQGNFG++DGD AAA RYTEAR Sbjct: 68 ATVVGEVIGKYHPHGDAAVYDTLVRLAQDFSMRHPLVDGQGNFGSVDGDPAAAMRYTEAR 127 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 +T++A +L+ ++ D V+F ++E EP V P++FPNLL NG GIAVGMAT IP HN Sbjct: 128 LTRIATEMLRDINADTVNFVPNFDESQREPEVLPARFPNLLVNGADGIAVGMATKIPPHN 187 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 + E+ +A +ALI++PE+ E L YI GPDFPTGGI+V +R I E+ R GRG RVRA+ Sbjct: 188 LGEVIDATVALIEDPELDDEGLARYIKGPDFPTGGIVVGTR-GIREAIRTGRGSVRVRAK 246 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE-DVRIVLF 314 E++ IVVTE+PYQV K++L++KIAEL+ ++I + D+RDES +RIV+ Sbjct: 247 AHTEQIKGNRTQIVVTELPYQVNKAQLLQKIAELVKDRKISDIADLRDESDRGGMRIVIE 306 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K ++ P +++ ++F + M+ F +N+ L G VP+ + L+ ++AH+ EV+ R Sbjct: 307 LKREAV-PKVVLNNLFKHTQMQQSFGVNLVALVDG-VPKTLSYKEALRHYIAHQFEVVTR 364 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAII---RNEDKPKPVMVSRFSLTENQVDAI 431 R+ + R IL+GLLIA N+DE++ I RN + + +V RF L+E Q AI Sbjct: 365 RTRHELGRARARAHILEGLLIALSNLDEVVETIRRSRNVETARRNLVKRFRLSERQAQAI 424 Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491 L+LRL+ L LE +++ + +L+ + E ++ +L + + I E+ E+K ++ Sbjct: 425 LDLRLQRLTALERRKVEQDHRDLVEKIEYLEGVLADESKVYGIIREELLEIKAAYADE-- 482 Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHS--------VDLSAL 543 RRT A+ + +I +E + + IS+ G+++S+ S V ++ + Sbjct: 483 ---RRTAITAQEGAEFEV--EDLIAEEEMVISISHEGYLKSVPIGSFRKQGRGGVGVAGM 537 Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQD 601 KEGD ++ T +L + GK Y L L + G + L+ L + Sbjct: 538 ELKEGDYIEHLFITTTHHYMLFFTNRGKVYRLKVHQLPRMGRAAKGRHVANLLPLAPGER 597 Query: 602 I---VTAFVYDSTCKLLVVSSKG 621 I ++ +D LL + +G Sbjct: 598 IAAVISTRDFDEAEYLLFATRRG 620 >gi|194366351|ref|YP_002028961.1| DNA gyrase subunit A [Stenotrophomonas maltophilia R551-3] gi|194349155|gb|ACF52278.1| DNA gyrase, A subunit [Stenotrophomonas maltophilia R551-3] Length = 904 Score = 428 bits (1100), Expect = e-117, Method: Compositional matrix adjust. Identities = 283/768 (36%), Positives = 414/768 (53%), Gaps = 90/768 (11%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 V+L + + YL YA+S I RA+PD RDG KPVHRR++ AM+E+ + KSARIV Sbjct: 11 VNLEDEMRKSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMNELNAHSNKPYFKSARIV 70 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGDQSVYD+LVRLAQPF RY L+ GQGNFG++DGDSAAA RYTEARM+++ Sbjct: 71 GDVIGKYHPHGDQSVYDTLVRLAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEARMSRL 130 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A ++ +D++ VDF+ Y+E++ EP V P++FPNLL NG++GIAVGMAT+IP HN+ E Sbjct: 131 AHELMADIDKETVDFQPNYDEKELEPTVMPTRFPNLLVNGSAGIAVGMATNIPPHNLTES 190 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 A +ALIDNPEI ++ L+EYI GPDFPT GII I+ YR GRG R+RA+ +E Sbjct: 191 INACIALIDNPEIDVDGLMEYIPGPDFPTAGII-NGTAGIIAGYRTGRGRVRIRAKADIE 249 Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319 G I+VTEIPYQV K+RLIEKIAEL+ K+I + ++RDES +D + R Sbjct: 250 VADNGRESIIVTEIPYQVNKARLIEKIAELVKEKKIEGISELRDESDKDGMRIYIEIKRG 309 Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379 ++++ +++ + ME+ F +NM L GR PQ+M L +L+ ++ HRREV+ RR+ F Sbjct: 310 ESAEVVLNNLYQQTQMESVFGINMVALVDGR-PQLMNLKQMLEAFVRHRREVVTRRTVFE 368 Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSR---------------- 420 ++ R +L+GL +A NIDE+I +I+ P M++R Sbjct: 369 LRKARARAHVLEGLTVALANIDEMIELIKTSPNPAEARERMLARLWEPGLVGSMLGAAGA 428 Query: 421 ------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKID 462 + LTE Q IL +RL L LE+ ++ E LL E I Sbjct: 429 EASRPDDLPKGVGLIEGGYQLTEIQATQILEMRLHRLTGLEQDRLTEEYKQLL---EVIA 485 Query: 463 SLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITV 522 L++ + +++ IRE E+ S + G R T S D L +I E + V Sbjct: 486 GLIHI-LEDPDRLLQVIRE--ELISVKAEFGDERRTEIRHSEEDLDILD--LIAPEDVVV 540 Query: 523 VISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT 574 +S+ G+++ + + SA KE D ++ +T D +L ++ GK + Sbjct: 541 TVSHAGYVKRQPVSVYRAQRRGGRGRSAASTKEEDFIEQLWLVNTHDTLLTFTSSGKVFW 600 Query: 575 LP------AGNLLSGRG--------HGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSK 620 LP AG+ GR GE +Q ++ + D FV+ +T V + Sbjct: 601 LPVYQLPEAGSNARGRPIINWIPLEPGERVQAVLPVREYAD--GQFVFFATKNGTVKKTP 658 Query: 621 GN--AFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQI 678 AF + +I N +G + V + + + + N K + F D++ Sbjct: 659 LGEFAFRLARGKIAINLDEGDALVGVGLTDGER--------DILLFASNGKTVRFGEDKV 710 Query: 679 PEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSEND 725 M R GVR G +V+ + E SAG S + +E+D Sbjct: 711 RSMGRTATGVRGIKMPAG--EEVVSLIVAE------SAGGSEDENEDD 750 >gi|282163381|ref|YP_003355766.1| DNA gyrase subunit A [Methanocella paludicola SANAE] gi|282155695|dbj|BAI60783.1| DNA gyrase subunit A [Methanocella paludicola SANAE] Length = 812 Score = 428 bits (1100), Expect = e-117, Method: Compositional matrix adjust. Identities = 262/694 (37%), Positives = 400/694 (57%), Gaps = 36/694 (5%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 +E V V + + + Y+ YA+S I RA+PD+RDG KPVHRR+++ M E+G + +K Sbjct: 4 QETVLPVKIEEEMRKSYIDYAMSVIVGRALPDVRDGLKPVHRRVLYGMYELGNTYDKPYK 63 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSAR+VG+V+GK HPHGD ++YD++VR+ Q F RYPLI GQGNFG++DGDSAAA RYTE Sbjct: 64 KSARVVGDVMGKYHPHGDMAIYDTIVRMVQDFSLRYPLIDGQGNFGSVDGDSAAAMRYTE 123 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 RM ++A+ +L +D++ V+F ++E EP V P+K PNLL NG+SGIAVGMAT+IP Sbjct: 124 VRMAKIADEMLDDLDKETVNFVPNFDESLKEPSVLPAKLPNLLINGSSGIAVGMATNIPP 183 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E+ + +ALI++P I +LL+ I GPDFPTG I RE I ++Y GRG ++R Sbjct: 184 HNISEVIDGTVALINDPAIEPLELLKLITGPDFPTGAYIY-GREGIKDAYLTGRGSIKIR 242 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIV 312 A+ + E G G I+VTEIPY V K++LIE IA+L+ K++ + D+RDES D +RIV Sbjct: 243 AKAEITEEG-GRNVILVTEIPYMVNKAKLIENIADLVRDKKLEGISDLRDESDRDGMRIV 301 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 + K + + ++L+ ++ + MET F +N N+ + P+ + L L+ +L HR+EV+ Sbjct: 302 IELK-KGANANVLLNQLYRHTQMETTFGVN-NLALVDNQPRTLSLKETLEYYLKHRQEVV 359 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVD 429 RRS F ++ R IL GLL+A NID+ + I+R + D K V +S++ L+E Q Sbjct: 360 TRRSQFELKKAQAREHILAGLLVALDNIDDFVNILRRSASADDAKAVFMSKYGLSEEQSK 419 Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489 AIL++RLR L LE +I+ E L+ + +L S + + I E+ E++ + Sbjct: 420 AILDMRLRGLTGLERRKIEDERAELIKLIAHLKEVLASPQMVLDIIKNELLELRAKYGDG 479 Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLS 541 RRT E +D + + +I E + V ISN G+I R+ + + + Sbjct: 480 -----RRTIIKE---SDGEIVDEDLIPVENVVVTISNTGYIKRQPVDTYRTQRRGGMGIM 531 Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHN 599 + KE D + A T D +L + G+ Y L + S + G+AI L+ L N Sbjct: 532 GMETKEEDFVVDVFTASTHDHLLFFTNKGRVYVLKVYEIPEASRQSRGKAIVNLLTLMPN 591 Query: 600 QDIVTAFV----YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV-V 654 + V A + +D L++ + +G S R G + + +E +L+ V Sbjct: 592 ES-VNAMIPIKEFDEKHYLIMCTREGTIKKTALSSFQNIRRTG--IIAIGLDEGDELISV 648 Query: 655 KVT--GDHVAVVGENRKLLIFSIDQIPEMSRGKG 686 K+T G V + N K FS ++ M R G Sbjct: 649 KLTNGGQEVLIATRNGKANRFSESEVRPMGRQAG 682 >gi|317014116|gb|ADU81552.1| DNA gyrase subunit A [Helicobacter pylori Gambia94/24] Length = 828 Score = 427 bits (1099), Expect = e-117, Method: Compositional matrix adjust. Identities = 248/614 (40%), Positives = 379/614 (61%), Gaps = 42/614 (6%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 +N+ V + ++EE YLAY++S I RA+PD RDG KPVHRRI++AM E+GL A+KK Sbjct: 10 KNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHELGLTSKVAYKK 69 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 SARIVG+VIGK HPHGD +VYD+LVR+AQ F R L+ GQGNFG+IDGD+AAA RYTEA Sbjct: 70 SARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDNAAAMRYTEA 129 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 RMT+ +E IL+ +D+D +DF Y++ EP + PS+ PNLL NG +GIAVGMATSIP H Sbjct: 130 RMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGIAVGMATSIPPH 189 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 + EI +A +++NP ++++LE++ GPDFPTGGII + IVE+Y+ GRG +VRA Sbjct: 190 RIDEIIDALAHVLENPNAELDEILEFVKGPDFPTGGIIY-GKAGIVEAYKTGRGRVKVRA 248 Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVL 313 + VE+ + IV+ E+P+Q K++L+E+I++L K+I + ++RDES E +R+V+ Sbjct: 249 KVHVEKT-KNKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRDESDREGIRVVI 307 Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373 K ++ ++++ ++ L+ MET F + + + + P++ L +L+ +L HR+ ++ Sbjct: 308 ELKRDAM-SEIVLNHLYKLTTMETTFSIILLAI-YNKEPKIFTLLELLRLFLNHRKTIII 365 Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVDA 430 RR+ F ++ R IL+G LIA NIDEI+ +I+ P K ++ RFSL+E Q A Sbjct: 366 RRTIFELEKAKARAHILEGYLIALDNIDEIVRLIKTSPSPEAAKNALMERFSLSEIQSKA 425 Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490 IL +RL+ L LE +IK E NLL + ++ +L S + + E+ EVKE FS Sbjct: 426 ILEMRLQRLTGLERDKIKEEYQNLLELIDDLNGILKSEDRLNEVVKTELLEVKEQFSSP- 484 Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK---- 546 RRT E+ + ++ + +I EP+ V +S +G+++ VDL A + Sbjct: 485 ----RRT---EIQESYESIDTEDLIANEPMVVSMSYKGYVK-----RVDLKAYERQNRGG 532 Query: 547 ---------EGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQL 592 E D ++ A+T D +L ++ G K Y +P + ++ G+AI Sbjct: 533 KGKLSGSTYEDDFIENFFVANTHDILLFITNKGQLYHLKVYKIPEASRIA---MGKAIVN 589 Query: 593 LIDLNHNQDIVTAF 606 LI L N+ I+ Sbjct: 590 LISLAPNEKIMATL 603 >gi|328953221|ref|YP_004370555.1| DNA gyrase, A subunit [Desulfobacca acetoxidans DSM 11109] gi|328453545|gb|AEB09374.1| DNA gyrase, A subunit [Desulfobacca acetoxidans DSM 11109] Length = 808 Score = 427 bits (1099), Expect = e-117, Method: Compositional matrix adjust. Identities = 279/758 (36%), Positives = 436/758 (57%), Gaps = 38/758 (5%) Query: 13 VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72 +E V V++ + + YL YALS I RA+PD+RDG KPVHRRI+ AMSE G D+ + Sbjct: 1 MESRVVHVNIEDEIRKSYLEYALSVIIGRALPDVRDGLKPVHRRILFAMSEAGNDYNKPY 60 Query: 73 KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132 KKSARIVG+VIGK HPHGD +VYD++VR+AQ F RYPL+ GQGNFG+IDGD+ AA RYT Sbjct: 61 KKSARIVGDVIGKYHPHGDTAVYDAIVRMAQDFSLRYPLVDGQGNFGSIDGDAPAAMRYT 120 Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192 E RMT++A +L +D++ VDF Y+ EP+V P++ PNLL NG+SGIAVGMAT+IP Sbjct: 121 EVRMTRLAGELLLDLDKETVDFIPNYDGSMQEPLVLPARAPNLLINGSSGIAVGMATNIP 180 Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252 HN+ E+C A LA I NP+IS+ +L+ + GPDFPT G I S + I E+YR G+G R+ Sbjct: 181 PHNLAEVCNALLAFIKNPQISLAELMAIMPGPDFPTAGFIYGS-DGIAEAYRTGKGLIRL 239 Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRI 311 RAR +E+ G G I++ E+PYQV K +LIE+I EL+ K+I + DIRDES E +R+ Sbjct: 240 RARTFLEQRG-GREYIIINELPYQVNKVKLIERIVELVKDKKIEGITDIRDESDREGMRV 298 Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371 V+ + L +L +F ++M+ + +N+ + R P+++ L +L E+L HRREV Sbjct: 299 VIQLRKDELAQPIL-NQLFAHTNMQVTYGINLVAIVNNR-PELLSLKDLLTEFLKHRREV 356 Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQV 428 + RR+ + ++ + R IL GL IA ++D+IIA+IR+ P + +V RF+LTE Q Sbjct: 357 IVRRTLYELRKAEERAHILAGLKIALDHLDQIIALIRSAASPSTARSQLVERFTLTEVQA 416 Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488 AIL +RL+ L LE +I E + LL + + +L + + I ++ ++++ + Sbjct: 417 QAILEMRLQRLTGLERQKIIDEYEQLLKDIARFKEILANEALVYQLIEADLIDLRDRYGD 476 Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDL 540 RRT + + TL+ +I E + V +S++G+I RS + Sbjct: 477 P-----RRTEI--IPETAELTLED-LIPDEDMVVTVSHQGYIKRNPLNLYRSQRRGGKGR 528 Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNH 598 + + KE D + A T + L+ S G+ Y L + G G+AI L++ Sbjct: 529 TGMSIKEDDFVSQLYIASTHNYFLVFSNLGRIYWLKVHEIPVGSPSARGKAIVNLLNFGS 588 Query: 599 NQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTR-KGKTFLKVSSEEKMKLV- 653 + + T + L++ + +G I++++E++ +R + + + +E +LV Sbjct: 589 QEKLTTILPIREFVPEHYLVMATKRG---IIKKTELMNFSRPRSGGLIACTLDEGDELVS 645 Query: 654 VKVT-GDHVAVVGEN-RKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLT 710 V +T G+ +G + K++ F+ + +M R +GVR + + + EG Sbjct: 646 VALTDGNKEVFLGTSLGKIIRFAEQDVRDMGRSARGVRGMTVAEDDCIVGMEILSAEGAI 705 Query: 711 WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG 748 +A R+ ++ L KRGG G L + R+G Sbjct: 706 LTVTANGYGKRTRHEEY-RLQKRGGSGLLALRITDRNG 742 >gi|269115201|ref|YP_003302964.1| DNA gyrase subunit A [Mycoplasma hominis] gi|11068127|gb|AAB37247.2| DNA gyrase subunit A [Mycoplasma hominis ATCC 23114] gi|268322826|emb|CAX37561.1| DNA gyrase subunit A [Mycoplasma hominis ATCC 23114] Length = 911 Score = 427 bits (1099), Expect = e-117, Method: Compositional matrix adjust. Identities = 255/710 (35%), Positives = 410/710 (57%), Gaps = 42/710 (5%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 +K +L ++ ++ YA+S I RA+PD RDG KPVHRRI++ MSE+G+ + A KKSA Sbjct: 78 LKPANLSKVMKTSFIEYAMSVIVSRALPDARDGLKPVHRRILYGMSELGMFYTAPHKKSA 137 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 RIVG+V+GK HPHGD SVY+++VR+AQ F RYPLI G GNFG++DGD AAA RYTEARM Sbjct: 138 RIVGDVLGKYHPHGDSSVYEAMVRMAQDFSLRYPLIDGHGNFGSVDGDEAAAMRYTEARM 197 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 +++A ++ G+ ++ VDF D Y+ + EPVV PS+FPNLL +G+SGIAVGMAT+IP HN+ Sbjct: 198 SKIAGAMVDGIKKNTVDFMDNYDATEKEPVVLPSRFPNLLVSGSSGIAVGMATNIPPHNL 257 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E +A AL NPEI++ +L+EYI PDFPTGGII +++ ++E+Y GRG +R++ Sbjct: 258 GETIDAVCALAKNPEINVFELMEYIQAPDFPTGGIIF-NKKGLIEAYSTGRGSITIRSKA 316 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFP 315 ++E+ G I+VTEIPY+V+K+ ++EKI+ELI K+I + D RDES D +RIV+ Sbjct: 317 HIQELSNGKSKIIVTEIPYEVKKTEIMEKISELIKDKKIDGIADFRDESNRDGIRIVIDI 376 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 K +S P++++ ++F L+ +++ + NM L + P+++ L L+ +L H+ EV+ RR Sbjct: 377 K-KSFVPEIVLNNLFKLTKLQSNYSFNMIAL-VNNEPKLLNLKACLEVYLKHQIEVVSRR 434 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAII---RNEDKPKPVMVSRFSLTENQVDAIL 432 F ++ R IL+GL I NID +I II + + + + + F+L+E Q AI+ Sbjct: 435 LKFDLEKDRARAHILEGLKICIENIDAVIKIIKESKTDQEAQSKLSQAFNLSEIQTKAIV 494 Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492 +++L L L ++ EL+ + +L N I E++E+K + D Sbjct: 495 DMKLGRLTGLAIEKMNEELNEVHERIANYIKILGDHNLLINLIIEELQEIKNAYG---DA 551 Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSVDLSALH 544 R + E+S D + +I K I + ++N G+I+ L + V +S Sbjct: 552 RRSDINWDELSSID----NEDLIPKRDIVITLTNNGYIKRLDIEEYREQRRGGVGVSTTK 607 Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAI---QLLIDLNHNQD 601 + D+++ L A+T +L+ + K Y + + G + I ++ + N+ Sbjct: 608 TYKDDAIQDILVANTHTDLLIFTDLAKVYRIRGHEVPVGTKQSKGIPIVNVIPSIQKNEK 667 Query: 602 IVTAFV---YDSTCKLLVVSSKGNAFIVEESEII---ANTRKGKTFLKVSSEEKM---KL 652 ++ Y LL + KG IV+++ I + R GK + ++ L Sbjct: 668 VIKILPINEYKQNEYLLTATKKG---IVKKTPTILFESINRNGKIAFAIRDDDDKLIDAL 724 Query: 653 VVKVTGDHVAVVGENRKLLIFSIDQIPEMSRG----KGVRLQSYKDGGIS 698 +VK D + + N K+ F ++I M R KG+++ +D +S Sbjct: 725 IVK-DEDEIFIAASNNKICRFDSNEIRSMGRMAYGVKGIKIDDVEDNVVS 773 >gi|254503583|ref|ZP_05115734.1| DNA gyrase, A subunit [Labrenzia alexandrii DFL-11] gi|222439654|gb|EEE46333.1| DNA gyrase, A subunit [Labrenzia alexandrii DFL-11] Length = 940 Score = 427 bits (1099), Expect = e-117, Method: Compositional matrix adjust. Identities = 255/689 (37%), Positives = 391/689 (56%), Gaps = 62/689 (8%) Query: 4 DNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63 DN + S L ++K VS+ ++ YL YA+S I RA+PD+RDG KPVHRRI+++M E Sbjct: 9 DNSTPSGGL-PSDIKPVSIVDEMKRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYSMHE 67 Query: 64 MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123 G ++ ++KSAR+VG+V+GK HPHGD ++YD+LVR+AQ F R PLI GQGNFG++DG Sbjct: 68 NGYEWNKPYRKSARVVGDVMGKYHPHGDSAIYDALVRMAQNFSLRLPLIDGQGNFGSVDG 127 Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183 D AAA RYTE R+ +VA +L +D+D VDF++ Y+ +SEPVV P+KFPNLL NG GI Sbjct: 128 DPAAAMRYTECRLEKVAHRLLDDIDKDTVDFQENYDNSESEPVVLPAKFPNLLVNGAGGI 187 Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243 AVGMAT+IP HN+ E+ +A++A+++NP +++E+L++ + GPDFPTGG+I+ R I +Y Sbjct: 188 AVGMATNIPPHNLGEVIDASIAIMENPAMTLEELMQIVPGPDFPTGGMIL-GRSGIRSAY 246 Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303 GRG +RA+ EE+ + W ++VTEIPYQV KS +IEKIAE++ KR+ + DIRD Sbjct: 247 ETGRGSVPMRAKVDTEEIRKDRWALIVTEIPYQVNKSTMIEKIAEMVRDKRVEGISDIRD 306 Query: 304 ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363 ES V+ R PD+++ ++ S ++T F NM L+ G+ P+ M L +LK Sbjct: 307 ESDRSGMRVVIELKRDAVPDVVLNQLYRFSQLQTSFGANMVALNGGK-PEQMNLSDMLKA 365 Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------- 416 ++A R EV+ RR+ + ++ R IL GL IA NIDE+I +IR P Sbjct: 366 FVAFREEVIQRRTRYLLKKCRDRAHILVGLGIAVANIDEVIKLIRAAPDPATARAQLMER 425 Query: 417 -------------------MVSR---FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNL 454 MV + L+E Q AIL+LRL+ L + +I+ EL+ + Sbjct: 426 NWPARDVEDLIRLIDDPRHMVQEDGTYKLSEEQARAILDLRLQRLTAMGRDEIEEELNKI 485 Query: 455 LAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAM 514 AE +L S + + E+ E++E F+ RRT E AD ++ + Sbjct: 486 GAEISDYLDILRSRARIQEIVRNEMLEIREEFATP-----RRTEIIE-GGADFD--EEDL 537 Query: 515 IEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLL 566 I++E + V +S+ G+I R+ + S + K+ D + A+T +L Sbjct: 538 IQREDMVVTVSHGGYIKRVPLATYRAQRRGGKGRSGMATKDEDFVTRLFVANTHTPVLFF 597 Query: 567 STDG-----KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD------STCKLL 615 S+ G K + LP G S G+A+ ++ L + I + + ++ Sbjct: 598 SSRGICYKMKVWRLPLGGPTS---RGKALVNMLPLEQGEQITSILPLPEDEDTWANLDVM 654 Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKV 644 + +G + S+ + R GK +K+ Sbjct: 655 FATVRGTVRRNKLSDFVNINRNGKIAMKL 683 >gi|315638858|ref|ZP_07894030.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Campylobacter upsaliensis JV21] gi|315481076|gb|EFU71708.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Campylobacter upsaliensis JV21] Length = 852 Score = 427 bits (1099), Expect = e-117, Method: Compositional matrix adjust. Identities = 240/608 (39%), Positives = 381/608 (62%), Gaps = 32/608 (5%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 + + + + + +++ YL Y++S I RA+PD RDG KPVHRRI++AM+++G+ +A+K Sbjct: 8 DSDTQIIDIEDSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMNDLGVGSRSAYK 67 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSARIVG+VIGK HPHGD +VYD+LVR+AQ F RYP + GQGNFG+IDGD AAA RYTE Sbjct: 68 KSARIVGDVIGKYHPHGDTAVYDALVRMAQSFSMRYPSVDGQGNFGSIDGDGAAAMRYTE 127 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 ARMT +AE +L+ +D+D VDF Y++ EP V PS+ PNLL NG+SGIAVGMAT+IP Sbjct: 128 ARMTILAEELLRDIDKDTVDFVPNYDDSMQEPDVLPSRVPNLLLNGSSGIAVGMATNIPP 187 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 H++ E+ + L L+DN E S+E+L+++I GPDFPT GII ++ I+++YR GRG ++R Sbjct: 188 HSLNELVDGLLYLLDNKEASLEELMQFIKGPDFPTAGIIY-GKKGIIDAYRTGRGRIKIR 246 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIV 312 A+ +E+ IV+ E+PYQ K+RLIE+IAEL+ K+I + ++RDES E +R+V Sbjct: 247 AKTHIEKRANKD-IIVIDELPYQTNKARLIEQIAELVKEKQIEGIAEVRDESDREGIRVV 305 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 + K ++ ++++ ++F + ME+ F + M + + P++ L +L +L HR+ V+ Sbjct: 306 IELKRDAM-SEIVLNNLFKSTTMESTFGVIMLAIH-NKEPKIFSLIELLNLFLTHRKTVI 363 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLTENQVD 429 RR+ + +Q R IL+GL IA NIDE+IA+I+N + + +V++F L+E Q + Sbjct: 364 IRRTIYELQKARARAHILEGLKIALDNIDEVIALIKNSADNNAAREGLVAKFGLSELQAN 423 Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489 AIL+++L L LE +I++EL LL E ++D +L S + I E++E++ F Sbjct: 424 AILDMKLGRLTGLEREKIENELAELLKEIARLDEILKSEALLEDLIREELKEIRAKF--- 480 Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS-------- 541 D+ R ++ + +I E + V I++RG+I+ + S + Sbjct: 481 -DVPR----ITQIEDDYDDIDVEDLIPNENMVVTITHRGYIKRVPSKQYEKQKRGGKGKL 535 Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDL 596 A+ + D ++ A+T D ++ ++ G K Y +P G S G+A+ LI+L Sbjct: 536 AVTTYDDDFIESFFTANTHDTLMFVTDKGQLYWLKVYKIPEG---SRTAKGKAVVNLINL 592 Query: 597 NHNQDIVT 604 + I+ Sbjct: 593 QAEEKIMA 600 >gi|239637291|ref|ZP_04678278.1| DNA gyrase, A subunit [Staphylococcus warneri L37603] gi|239597128|gb|EEQ79638.1| DNA gyrase, A subunit [Staphylococcus warneri L37603] Length = 892 Score = 427 bits (1099), Expect = e-117, Method: Compositional matrix adjust. Identities = 238/594 (40%), Positives = 369/594 (62%), Gaps = 25/594 (4%) Query: 26 LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85 + E +L YA+S I RA+PD+RDG KPVHRRI++ ++E G+ +KKSARIVG+V+GK Sbjct: 18 MRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKSARIVGDVMGK 77 Query: 86 LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145 HPHGD S+Y+++VR+AQ F RYPL+ GQGNFG++DGD AAA RYTEARMT++ +L+ Sbjct: 78 YHPHGDSSIYEAMVRMAQEFSYRYPLVDGQGNFGSMDGDGAAAMRYTEARMTKITLELLR 137 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 +++D +DF D Y+ + EP V P++FPNLL NG +GIAVGMAT+IP HN+ E+ + L+ Sbjct: 138 DINKDTIDFIDNYDGNEREPSVLPARFPNLLVNGAAGIAVGMATNIPPHNLTEVIDGVLS 197 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265 L NP+ISI +L+E I GPDFPT G+I+ + I +Y GRG ++R+R +EE G G Sbjct: 198 LSKNPDISISELMEDIQGPDFPTAGLIL-GKSGIRRAYETGRGSIQMRSRAEIEERGGGR 256 Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA--EDVRIVLFPKNRSLDPD 323 IVVTEIP+QV K+R+IEKIAEL+ K+I + D+RDE++ VR+V+ + + + Sbjct: 257 QRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRVVIDIR-KDANAS 315 Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383 +++ +++ + ++T F +NM L GR P+++ L L +L H++ V+ RR+ + ++ Sbjct: 316 VILNNLYKQTPLQTSFGVNMIALVNGR-PKLINLKEALVHYLEHQKTVVRRRTEYNLRKA 374 Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVDAILNLRLRSLR 440 R IL+GL IA +IDEII+ IR + K M S RF L+E Q AIL++RLR L Sbjct: 375 KDRAHILEGLRIALDHIDEIISTIRESETDKVAMESLQERFKLSERQAQAILDMRLRRLT 434 Query: 441 KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500 LE +I+SE + LLA ++++++L + + E+ E+KE + G R T Sbjct: 435 GLERDKIESEYNELLAYIDELEAILADEEVLLQLVRDELTEIKERY------GDERRTEI 488 Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DLSALHFKEGDSLK 552 ++ D + +I +E I + +S+ +I+ L + + ++ E D + Sbjct: 489 QLGGLDDLE-DEDLIPEEQIVITLSHNNYIKRLPVSTYRAQNRGGRGVQGMNTLEEDFVS 547 Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVT 604 + T D +L + G+ Y L + LS + G I I+L +++ I T Sbjct: 548 QLVTLSTHDNVLFFTNKGRVYKLKGYEVPELSRQSKGIPIVNAIELENDESIST 601 >gi|91214852|ref|ZP_01251825.1| DNA gyrase A subunit [Psychroflexus torquis ATCC 700755] gi|91187279|gb|EAS73649.1| DNA gyrase A subunit [Psychroflexus torquis ATCC 700755] Length = 840 Score = 427 bits (1099), Expect = e-117, Method: Compositional matrix adjust. Identities = 281/768 (36%), Positives = 436/768 (56%), Gaps = 70/768 (9%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 E + +++ ++ Y+ Y++S I RA+PD+RDG KPVHRR++ M E+G+ + KK Sbjct: 5 EQLIPINIEDEMKTAYIDYSMSVIVSRALPDVRDGLKPVHRRVLFGMQELGIFSNKSHKK 64 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 SARIVGEV+GK HPHGD SVYD++VR+AQ + RY L+ GQGNFG++DGDS AA RYTEA Sbjct: 65 SARIVGEVLGKYHPHGDTSVYDAMVRMAQEWSMRYQLVDGQGNFGSVDGDSPAAMRYTEA 124 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 RM +++E +L +D++ VDF +++ EP V P++ PNLL NG SGIAVGMAT++ H Sbjct: 125 RMKKISEEMLADIDKETVDFVFNFDDTIEEPTVLPTRVPNLLVNGASGIAVGMATNMAPH 184 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 N+ E+ A I+N +I IE+L+ +I PDFPTGGII E + +++ GRG +RA Sbjct: 185 NLSEVINGVNAYINNRDIEIEELMTHIKAPDFPTGGIIY-GYEGVRDAFMTGRGRVVMRA 243 Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVL 313 + VEEV G CI++TEIPYQV K+ +I+K A+L+ K+I + IRDES + +RIV Sbjct: 244 KSSVEEVN-GRECIIITEIPYQVNKADMIKKTADLVNDKKIEGISLIRDESDRNGMRIVY 302 Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373 K SL P++++ ++F + +++ F +N L GR PQ++ L I+ ++ HR EV+ Sbjct: 303 ILKKDSL-PNVVLNTLFKHTALQSTFSVNNIALVKGR-PQMLNLKDIIYNFVEHRHEVVI 360 Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDA 430 RR+ + ++ + R IL+GL+IA NIDE+I++IR N ++ + +V RF L+E QV A Sbjct: 361 RRTKYLLRKAEERAHILEGLIIASDNIDEVISLIRGSQNAEEAREKLVERFQLSEIQVKA 420 Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490 I+ +RLR L LE+ +++ E D L+ E + +L+S ++ I E+ E+KE + Sbjct: 421 IVEMRLRQLTGLEQDKLRFEYDELMITIEDLKDILSSEDRRMEIIQTELLEIKEKYGDD- 479 Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSH------SVDLSA 542 RR+ E++ + MI E + + IS+ G+I+ LK + V A Sbjct: 480 ----RRS---EINMVGGDFSMEDMIPNESVVLTISHAGYIKRTPLKEYKIQNRGGVGQKA 532 Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKA-----YTLPAGNLLSGRGHGEAIQLLIDLN 597 ++ D L+ IL + GK + +P G+ S G AIQ L++L+ Sbjct: 533 STTRDEDFLEYIFSGTNHQYILFFTQKGKCFWMRVFEIPEGSKTS---KGRAIQNLMNLD 589 Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG---KTFLKVSSEEKMKLVV 654 + D + AF+ +V + N + ++ T+KG KT L+ S ++ + Sbjct: 590 PD-DRINAFI--------LVENLSNEDYINNHYVLMVTKKGQVKKTILEQYSRPRINGIN 640 Query: 655 KVT---GDH----VAVVGENR--------KLLIFSIDQIPEMSRG----KGVRLQSYKDG 695 ++ GD V GEN+ K L F I M RG KG+ L S KD Sbjct: 641 AISVRDGDELLSAVLTDGENQVMLGLRSGKALRFEEKHIRPMGRGAAGVKGITLASEKDE 700 Query: 696 GISDVICFKICEGLTWIDSAGRSYNRSE--NDLLG----WLGKRGGVG 737 I +IC K + T + + + Y + +D+ G + RGG G Sbjct: 701 VIG-MICVKNPQEETVLVVSEKGYGKRTFIDDVDGEPVYRITNRGGKG 747 >gi|328675629|gb|AEB28304.1| Topoisomerase IV subunit A [Francisella cf. novicida 3523] Length = 741 Score = 427 bits (1099), Expect = e-117, Method: Compositional matrix adjust. Identities = 264/728 (36%), Positives = 418/728 (57%), Gaps = 28/728 (3%) Query: 27 EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86 E+ YL Y++ I +RA+P + DG KPV RRII+AMSE+GL + +KKSAR VG+V+GK Sbjct: 18 EQAYLNYSMYVILDRALPHISDGLKPVQRRIIYAMSEIGLSHLSKYKKSARTVGDVLGKY 77 Query: 87 HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQVAELILQ 145 HPHGD + Y+++V +AQ F RYP I GQGN+G+ID S AA RYTE+R+++ A L+L Sbjct: 78 HPHGDSACYEAMVLMAQDFSYRYPFIDGQGNWGSIDDPKSFAAMRYTESRLSKYAVLLLD 137 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 + + VD+ ++ EP + P++ PN+L NG GIAVGM+T IP HN+ EI A L Sbjct: 138 ELKKGTVDWVKNFDGTMDEPKLLPAQVPNILLNGAMGIAVGMSTYIPPHNITEIINACLQ 197 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265 L+ P+ +IE++LE I PD+P G I+ S+E I E Y+ G G R +A + + G Sbjct: 198 LLSKPDSTIEEILEIIEAPDYPGGANIISSKEEIAEVYKSGNGSIRQQAVYEYDNHGN-- 255 Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES--AEDVRIVLFPKNRSLDPD 323 +V+T++P+QV + ++E+IA + ++I +++I+DES E VRIVL+ + Sbjct: 256 --VVITKLPHQVSSAAVMEQIANELKQQKITWIKNIQDESDDKEPVRIVLYSATTKKNIK 313 Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383 ++ + +D+E F +NMN++ + PQV L +LK+WL +R+ L RR + + Sbjct: 314 KIIGHLLATTDLEKSFRVNMNMIGLDNRPQVKNLLDVLKQWLEYRKNTLRRRLQTSLDKV 373 Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLE 443 R+ IL+GLLIA+LNIDE+I IIRN D P + +RF+L+E Q +AILN+RLR L K+E Sbjct: 374 LDRLHILEGLLIAFLNIDEVIDIIRNYDDPSDELQTRFTLSEIQAEAILNIRLRKLAKIE 433 Query: 444 EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVS 503 E +IK E L E+E ++ LNS + N + E +++ F S RR+ Sbjct: 434 EIEIKKEQKELQKERELLEGYLNSEVKFRNLMKKEFKQILADFGDS-----RRSKVIAAE 488 Query: 504 RADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRI 563 +A +A ++ ++ E +T+++S GWIR K ++D + L +K D + ++ ++ Sbjct: 489 KA-QALEEKDLMPSERVTIILSKAGWIRCAKGENIDPAGLSYKPEDKPFLVTTGNSNIKL 547 Query: 564 LLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNA 623 + S GKAY++ L S RG+GE I I L+ I++ ++ L+ S G Sbjct: 548 VFFSKLGKAYSMYVDKLPSARGYGEHITTYIPLDKQDQIISMAFVNAAEYFLIASESGKG 607 Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH--VAVVGENRKLLIFSIDQIPEM 681 F++ ++I N GK K + DH +A+ E R +++ + Sbjct: 608 FVIPAEDLITNKVTGKNIFDADDVFKF---IPFDQDHKMLAISSEGR-IIVRDFSSFALL 663 Query: 682 SRGKG---VRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNR--SENDLLGWLGKRGGV 736 +GKG +RL K + + F+ + LT +AG+ + R S+N + K G Sbjct: 664 KKGKGKSIIRLD--KKDKLKFIELFRANQELTL--NAGKRFIRIDSKNIETYYSDKPSGG 719 Query: 737 GSLVPKGF 744 G L+P+GF Sbjct: 720 GVLLPQGF 727 >gi|163868581|ref|YP_001609790.1| DNA gyrase subunit A [Bartonella tribocorum CIP 105476] gi|161018237|emb|CAK01795.1| DNA gyrase subunit A [Bartonella tribocorum CIP 105476] Length = 916 Score = 427 bits (1099), Expect = e-117, Method: Compositional matrix adjust. Identities = 256/696 (36%), Positives = 395/696 (56%), Gaps = 62/696 (8%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 ++ +S+ ++ YL YA+S I RA+PD+RDG KPVHRRI+HAM+EMGL F ++KSA Sbjct: 5 IEPISIIDEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAMNEMGLVFNKPYRKSA 64 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 +VGEV+GK HPHGD S+YD+LVR+AQ F R PLI GQGNFG++DGD AA RYTE R+ Sbjct: 65 GVVGEVMGKFHPHGDASIYDALVRMAQDFSLRNPLIDGQGNFGSVDGDPPAAMRYTECRL 124 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 +V+E +L +D+D VDF+D Y+ + EPVV P++FPNLL NG+ GIAVGMAT+IP HN+ Sbjct: 125 EKVSEELLADIDKDTVDFQDNYDGREREPVVLPARFPNLLVNGSGGIAVGMATNIPPHNL 184 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ + +ALIDNP+I++++++E I GPDFPTGGII+ R + +Y GRG +RA+ Sbjct: 185 SEVVDGCIALIDNPDITLDQIIEIIPGPDFPTGGIIL-GRSGVRSAYETGRGSIIMRAKV 243 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316 +EE+ G I+V+EIPYQV K+ +IEK+AEL+ KRI + D+RDES D V+ Sbjct: 244 DIEEIRSGRQAIIVSEIPYQVNKATMIEKMAELVRDKRIEGISDLRDESDRDGYRVVIEL 303 Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376 + + ++++ ++ + ++T F NM L+ G+ P+ M L +L+ ++A R EV+ RR+ Sbjct: 304 KKDVVAEVVLNQLYRYTPLQTSFGCNMVALNGGK-PEQMTLLDMLRAFVAFREEVVSRRT 362 Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK-----------PVM-------- 417 + ++ R +L GL +A NIDEIIA+IR P+ P M Sbjct: 363 KYLLRKARERAHVLVGLALAVANIDEIIALIRKAPDPQTARAQLMERRWPAMDVAPLIKL 422 Query: 418 ----------VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467 ++L+E Q AIL LRL+ L L +I EL+ + + +L S Sbjct: 423 IDDPRHIIHEDGTYNLSEEQARAILELRLQRLTALGRDEIADELNKIGVDIADYLDILAS 482 Query: 468 GKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNR 527 + + + E+ ++E F+ RRT F S ++ + +I E + V +S+ Sbjct: 483 RVRIMHIVKDELSALREEFATP-----RRTVFGFGSAEMES---EDLIAPEDMVVTVSHS 534 Query: 528 GWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYT 574 G+I R+ + S + K+ D + A+T +L S+ G K + Sbjct: 535 GYIKRVPLNTYRAQRRGGKGRSGMSTKDEDFVTRLFVANTHTPVLFFSSRGIVYKEKVWR 594 Query: 575 LPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD------STCKLLVVSSKGNAFIVEE 628 LP G S G A+ ++ L + I T S ++ +++G + Sbjct: 595 LPLGTPQS---RGRALINMLPLQQGERITTIMPLPEDEASWSALDIMFATTRGTVRRNKL 651 Query: 629 SEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVV 664 S+ + R GK +K+ E+++ L V+ +H VV Sbjct: 652 SDFVQVNRNGKIAMKLDEEDEI-LSVETCTEHDDVV 686 >gi|33469290|gb|AAQ19682.1| DNA gyrase subunit A [Staphylococcus haemolyticus] Length = 894 Score = 427 bits (1099), Expect = e-117, Method: Compositional matrix adjust. Identities = 236/594 (39%), Positives = 366/594 (61%), Gaps = 25/594 (4%) Query: 26 LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85 + E +L YA+S I RA+PD+RDG KPVHRRI++ ++E G+ +KKSARIVG+V+GK Sbjct: 18 MRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKSARIVGDVMGK 77 Query: 86 LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145 HPHGD S+YD++VR+AQ F RYPL+ GQGNFG++DGD AAA RYTEA+MT++ +L+ Sbjct: 78 YHPHGDSSIYDAMVRMAQTFSYRYPLVDGQGNFGSMDGDGAAAMRYTEAKMTKITLELLR 137 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 +++D +DF D Y+ + EP V PS+FPNLL NG SGIAVGMAT+IP HN+ E+ L Sbjct: 138 DINKDTIDFLDNYDGTEREPEVLPSRFPNLLVNGASGIAVGMATNIPPHNLTEVINGVLH 197 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265 L NP+++I +L+E I GPDFPT G+I+ + I +Y GRG ++RAR +EE G G Sbjct: 198 LSKNPDVTIAELMEDIQGPDFPTAGLIL-GKSGIRRAYETGRGSIQMRARAEIEERGGGR 256 Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA--EDVRIVLFPKNRSLDPD 323 IVVT+IPYQV K+R+IEKIAEL+ K+I + D+RDE++ VR+V+ + + + + Sbjct: 257 QRIVVTQIPYQVNKARMIEKIAELVREKKIEGITDLRDETSLRTGVRVVIDVR-KDANAN 315 Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383 +++ +++ + ++T F +NM L GR P+++ L L E+L H++ V+ RR+ + ++ Sbjct: 316 VILNNLYKQTPLQTSFGVNMIALVNGR-PKLINLKQALVEYLEHQKTVVRRRTEYNLKKA 374 Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVDAILNLRLRSLR 440 R IL+GL IA +IDEII IR + K M + RF L+E Q AIL++RLR L Sbjct: 375 KDRAHILEGLRIALDHIDEIITTIRESETDKVAMETLQERFKLSERQAQAILDMRLRRLT 434 Query: 441 KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500 LE +I++E + LL +++ +L + + E+ ++KE F G R T Sbjct: 435 GLERDKIENEYNELLGYISELEEILADDEVLLQLVRDELTDIKERF------GDERRTEI 488 Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DLSALHFKEGDSLK 552 ++ D + +I +E I + +S+ +I+ L + + ++ E D + Sbjct: 489 QLGGLDDLE-DEDLIPEEQIVITLSHNNYIKRLPVSTYRSQHRGGRGVQGMNTLEEDFVS 547 Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVT 604 + T D +L + G+ Y L + LS + G + I+L++++ I T Sbjct: 548 QLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPVINAIELDNDETIST 601 >gi|329736159|gb|EGG72432.1| DNA gyrase, A subunit [Staphylococcus epidermidis VCU045] Length = 893 Score = 427 bits (1099), Expect = e-117, Method: Compositional matrix adjust. Identities = 262/694 (37%), Positives = 408/694 (58%), Gaps = 37/694 (5%) Query: 26 LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85 + E +L YA+S I RA+PD+RDG KPVHRRI++ ++E G+ +KKSARIVG+V+GK Sbjct: 18 MRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKSARIVGDVMGK 77 Query: 86 LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145 HPHGD S+Y+++VR+AQ F RYPL+ GQGNFG++DGD AAA RYTEARMT++ +L+ Sbjct: 78 YHPHGDFSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEARMTKITLELLR 137 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 +++D +DF D Y+ + EP V P++FPNLL NG +GIAVGMAT+IP HN+ E+ + L+ Sbjct: 138 DINKDTIDFIDNYDGNEREPSVLPARFPNLLVNGAAGIAVGMATNIPPHNLTEVIDGVLS 197 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265 L NP+I+I +L+E I GPDFPT G+++ + I +Y GRG ++R+R +EE G G Sbjct: 198 LSKNPDITINELMEDIQGPDFPTAGLVL-GKSGIRRAYETGRGSIQMRSRAEIEERGGGR 256 Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA--EDVRIVLFPKNRSLDPD 323 IVVTEIP+QV K+R+IEKIAEL+ K+I + D+RDE++ VR+V+ + + + Sbjct: 257 QRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRVVIDVR-KDANAS 315 Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383 +++ +++ + ++T F +NM L GR P+++ L L +L H++ V+ RR+ + ++ Sbjct: 316 VILNNLYKQTPLQTSFGVNMIALVNGR-PKLINLKEALIHYLEHQKTVVRRRTEYNLKKA 374 Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVDAILNLRLRSLR 440 R IL+GL IA +IDEII IR D K M S RF LTE Q AIL++RLR L Sbjct: 375 RDRAHILEGLRIALDHIDEIITTIRESDTDKIAMASLQERFKLTERQAQAILDMRLRRLT 434 Query: 441 KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500 LE +I+SE + LL ++++ +L + + E+ E+KE F RRT Sbjct: 435 GLERDKIESEYNELLEYIKELEEILADEEVLLQLVRDELTEIKERFGDE-----RRT--- 486 Query: 501 EVSRADKATLQ-QAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSL 551 E+ L+ + +I +E I + +S+ +I RS + ++ + D + Sbjct: 487 EIQLGGLEDLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRSQNRGGRGIQGMNTLDEDFV 546 Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAFV-- 607 + T D +L + G+ Y L + LS + G I I+L +++ I T Sbjct: 547 SQLVTMSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPIINAIELENDETISTMIAVK 606 Query: 608 -YDSTCKLLVVSSKGNAFIVEESEIIANTR---KGKTFLKVSSEEKMKLVVKVTGDHVAV 663 +S LV ++K IV+ S + +R GK + ++++ V TG+ + Sbjct: 607 DLESEEDYLVFATKQG--IVKRSSLSNFSRINKNGKIAINFKEDDELIAVRLTTGNEDIL 664 Query: 664 VGENRKLLI-FSIDQIPEMSR-GKGVRLQSYKDG 695 +G LI FS + + R GV+ S ++G Sbjct: 665 IGTAHASLIRFSESTLRPLGRTAAGVKGISLREG 698 >gi|330685301|gb|EGG96962.1| DNA gyrase, A subunit [Staphylococcus epidermidis VCU121] Length = 892 Score = 427 bits (1099), Expect = e-117, Method: Compositional matrix adjust. Identities = 238/594 (40%), Positives = 369/594 (62%), Gaps = 25/594 (4%) Query: 26 LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85 + E +L YA+S I RA+PD+RDG KPVHRRI++ ++E G+ +KKSARIVG+V+GK Sbjct: 18 MRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKSARIVGDVMGK 77 Query: 86 LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145 HPHGD S+Y+++VR+AQ F RYPL+ GQGNFG++DGD AAA RYTEARMT++ +L+ Sbjct: 78 YHPHGDSSIYEAMVRMAQEFSYRYPLVDGQGNFGSMDGDGAAAMRYTEARMTKITLELLR 137 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 +++D +DF D Y+ + EP V P++FPNLL NG +GIAVGMAT+IP HN+ E+ + L+ Sbjct: 138 DINKDTIDFIDNYDGNEREPSVLPARFPNLLVNGAAGIAVGMATNIPPHNLTEVIDGVLS 197 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265 L NP+ISI +L+E I GPDFPT G+I+ + I +Y GRG ++R+R +EE G G Sbjct: 198 LSKNPDISISELMEDIQGPDFPTAGLIL-GKSGIRRAYETGRGSIQMRSRAEIEERGGGR 256 Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA--EDVRIVLFPKNRSLDPD 323 IVVTEIP+QV K+R+IEKIAEL+ K+I + D+RDE++ VR+V+ + + + Sbjct: 257 QRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRVVIDIR-KDANAS 315 Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383 +++ +++ + ++T F +NM L GR P+++ L L +L H++ V+ RR+ + ++ Sbjct: 316 VILNNLYKQTPLQTSFGVNMIALVNGR-PKLINLKEALVHYLEHQKTVVRRRTEYNLRKA 374 Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVDAILNLRLRSLR 440 R IL+GL IA +IDEII+ IR + K M S RF L+E Q AIL++RLR L Sbjct: 375 KDRAHILEGLRIALDHIDEIISTIRESETDKVAMESLQERFKLSERQAQAILDMRLRRLT 434 Query: 441 KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500 LE +I+SE + LLA ++++++L + + E+ E+KE + G R T Sbjct: 435 GLERDKIESEYNELLAYIDELEAILADEEVLLQLVRDELTEIKERY------GDERRTEI 488 Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DLSALHFKEGDSLK 552 ++ D + +I +E I + +S+ +I+ L + + ++ E D + Sbjct: 489 QLGGLDDLE-DEDLIPEEQIVITLSHNNYIKRLPVSTYRAQNRGGRGVQGMNTLEEDFVS 547 Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVT 604 + T D +L + G+ Y L + LS + G I I+L +++ I T Sbjct: 548 QLVTLSTHDNVLFFTNKGRVYKLKGYEVPELSRQSKGIPIVNAIELENDESIST 601 >gi|256027572|ref|ZP_05441406.1| DNA gyrase subunit A [Fusobacterium sp. D11] gi|260495354|ref|ZP_05815481.1| DNA gyrase, A subunit [Fusobacterium sp. 3_1_33] gi|289765531|ref|ZP_06524909.1| DNA gyrase subunit A [Fusobacterium sp. D11] gi|260197132|gb|EEW94652.1| DNA gyrase, A subunit [Fusobacterium sp. 3_1_33] gi|289717086|gb|EFD81098.1| DNA gyrase subunit A [Fusobacterium sp. D11] Length = 811 Score = 427 bits (1098), Expect = e-117, Method: Compositional matrix adjust. Identities = 239/606 (39%), Positives = 376/606 (62%), Gaps = 25/606 (4%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 NV + L+E YL Y++S I RA+PD+RDG KPVHRRI+ AM+EMG+ FKKS Sbjct: 3 NVDNRYIEEELKESYLDYSMSVIVSRALPDVRDGLKPVHRRILFAMNEMGMTNDKPFKKS 62 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 ARIVGEV+GK HPHGD +VY ++VR+AQ F RY L+ G GNFG+IDGDSAAA RYTEAR Sbjct: 63 ARIVGEVLGKYHPHGDSAVYGTMVRMAQDFNYRYLLVEGHGNFGSIDGDSAAAMRYTEAR 122 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 M ++ +L+ +D++ +D+R +++ EP V P+K PNLL NG GIAVGMAT+IP HN Sbjct: 123 MEKITAELLEDIDKNTIDWRKNFDDSLDEPTVLPAKLPNLLLNGAIGIAVGMATNIPPHN 182 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 + E+ + LA+IDN +I I +L+ YI GPDFPTG II + R I+E+Y+ GRG +VR + Sbjct: 183 LGELVDGILAIIDNKDIEILELMNYIKGPDFPTGAII-DGRAGIIEAYKTGRGKIKVRGK 241 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLF 314 +EE+ G I+V+EIPYQ+ K+ LIEKIA L+ K+I + D+RDES E +RI++ Sbjct: 242 VDIEELKNGKSNIIVSEIPYQLNKANLIEKIANLVKEKKITEISDLRDESNREGIRILIE 301 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K + +P+L++ ++ +D++T F + M L + VP+V+ L +L E++ HR +V+ R Sbjct: 302 VK-KGEEPELVLNKLYKYTDLQTTFGVIMLSL-VNNVPRVLNLKEMLNEYIKHRFDVITR 359 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAI 431 R++F + ++R ILKG IA NID II +IR + ++ +++ T+ Q +I Sbjct: 360 RTAFDLDKAEKRAHILKGYQIALENIDRIIELIRASSDGTVAREQLIEKYAFTDIQARSI 419 Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491 L+++L+ L LE +I +E + A +++ +L + ++ + E+ E+KE ++ Sbjct: 420 LDMKLQRLTGLEREKIDTEFKEIEALIKELREVLEDNNKIYDIMKKELLELKEKYAD--- 476 Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD--------LSAL 543 +R T E R + L + +I+ E I + +N+G+++ +++ +SAL Sbjct: 477 ---KRRTKIEEERME--ILPEDLIKDEEIIITYTNKGYVKRIEASKYKAQRRGGKGVSAL 531 Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQD 601 + E D + A T D I++ + GK Y + A + LS + G + +I+L+ + Sbjct: 532 NTIEDDYAEKITSASTLDTIMVFTDRGKVYNIRAYEIPDLSRQSRGRLLSNIINLSEGEK 591 Query: 602 IVTAFV 607 + V Sbjct: 592 VRDTIV 597 >gi|109947505|ref|YP_664733.1| DNA gyrase subunit A [Helicobacter acinonychis str. Sheeba] gi|109714726|emb|CAJ99734.1| DNA gyrase subunit A [Helicobacter acinonychis str. Sheeba] Length = 831 Score = 427 bits (1098), Expect = e-117, Method: Compositional matrix adjust. Identities = 247/614 (40%), Positives = 381/614 (62%), Gaps = 42/614 (6%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 +N+ V + ++EE YLAY++S I RA+PD RDG KPVHRRI++AM+E+GL A+KK Sbjct: 10 KNIVEVGIDCSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMNELGLTSKVAYKK 69 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 SARIVG+VIGK HPHGD +VYD+LVR+AQ F R L+ GQGNFG+IDGD+AAA RYTEA Sbjct: 70 SARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDNAAAMRYTEA 129 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 RMT+ +E IL+ +D+D +DF Y++ EP + PS+ PNLL NG +GIAVGMATSIP H Sbjct: 130 RMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGIAVGMATSIPPH 189 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 + EI +A + +++NP + ++LE+I GPDFPTGGII + I+E+Y+ GRG +VRA Sbjct: 190 RIDEIIDALVHVLENPNAELNEVLEFIKGPDFPTGGIIY-GKVGIIEAYKTGRGRVKVRA 248 Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVL 313 + VE+ + IV+ E+P+Q K++L+E+I++L K+I + ++RDES E +R+V+ Sbjct: 249 KVHVEKT-KNKEVIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRDESDREGIRVVI 307 Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373 K ++ ++++ ++ L+ MET F + + + + P++ L +L +L HR+ ++ Sbjct: 308 ELKRDAM-SEIVLNHLYKLTAMETTFSIILLAI-YNKEPKIFTLLELLHLFLNHRKTIII 365 Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVDA 430 RR+ F ++ R IL+G LIA NIDEI+ +I+ + P K ++ RF+L+E Q A Sbjct: 366 RRTIFELEKAKARAHILEGYLIALDNIDEIVQLIKTSESPEMAKNTLMERFTLSEIQSKA 425 Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490 IL +RL+ L LE +IK E NLL ++++ +L S + + E+ EVKE FS Sbjct: 426 ILEMRLQRLTGLERDKIKEEYQNLLELIDELNGILKSEDRLNEVVKTELLEVKEQFSSP- 484 Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK---- 546 RRT E+ + + + +I EP+ V +S +G+++ VDL A + Sbjct: 485 ----RRT---EIQESYENIDIEDLIANEPMVVSMSYKGYVK-----RVDLKAYERQNRGG 532 Query: 547 ---------EGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQL 592 EGD ++ A+T D +L ++ G K Y +P + ++ G+AI Sbjct: 533 KGKLSGSTYEGDFIESFFVANTHDILLFITNKGQLYHLKVYKIPEASRIA---MGKAIVN 589 Query: 593 LIDLNHNQDIVTAF 606 LI L ++ I+ Sbjct: 590 LISLAPDEKIMATL 603 >gi|150014899|ref|YP_001307153.1| DNA gyrase subunit A [Clostridium beijerinckii NCIMB 8052] gi|149901364|gb|ABR32197.1| DNA gyrase, A subunit [Clostridium beijerinckii NCIMB 8052] Length = 828 Score = 427 bits (1098), Expect = e-117, Method: Compositional matrix adjust. Identities = 277/762 (36%), Positives = 438/762 (57%), Gaps = 44/762 (5%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 E V V ++ +++ Y+ YA+S I RA+PD+RDG KPVHRRI++++ E+GL ++ Sbjct: 5 EGKVIPVDIKNEMKKCYIDYAMSVIVGRALPDVRDGLKPVHRRILYSLQELGLTPEKGYR 64 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 K ARIVG+V+GK HPHGD SVYD+LVR+AQ F RY L+ G GNFG++DGDSAAA RYTE Sbjct: 65 KCARIVGDVLGKYHPHGDSSVYDALVRMAQDFSMRYMLVDGHGNFGSVDGDSAAAMRYTE 124 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 A+M ++A +L+ ++++ VDF ++ E+ EPVV PS+FPNLL NG+SGIAVGMAT+IP Sbjct: 125 AKMNKIAVEMLRDINKNTVDFMPNFDGEEQEPVVLPSRFPNLLVNGSSGIAVGMATNIPP 184 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ EI + + LIDNPE ++ +L+ I GPDFPTG I+ + I +Y G+G VR Sbjct: 185 HNLAEIIDGTIMLIDNPESTVLELMTKITGPDFPTGATIM-GKAGIRAAYETGKGKIIVR 243 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIV 312 A +EE G I+VTEIPYQV K++L+E IA+L+ K+I + D+RDES D +RIV Sbjct: 244 ANAEIEE-ENGRHSIIVTEIPYQVNKAKLVENIADLVKDKKITGISDLRDESDRDGMRIV 302 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 + K R +P +++ ++ + ++ F + M L + P+V+ L IL+ ++ ++EV+ Sbjct: 303 IELK-RDANPSVVLNLLYKHTKLQDTFGIIMLAL-VNNEPKVLNLKQILENYVEFQKEVI 360 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVD 429 RR+ F + + R IL+GL IA NIDE+I+IIRN + K ++ RF L+E Q Sbjct: 361 TRRTIFDLNKAEARAHILEGLKIALDNIDEVISIIRNSNTTEIAKNTLMERFELSEKQSQ 420 Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489 AIL +RLR L LE +I+ E + L+ + E + S+L S ++ + I E+ E+K +S Sbjct: 421 AILEMRLRRLTGLERGKIEEEYNELMKQIEYLKSILASEEKLLDVIKEELLEIKNRYSDE 480 Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD--------LS 541 R+ V+ D + +I++E + + +++ G+I+ + + + + Sbjct: 481 ----RKSKIEKIVNEID----IEDLIQEEDVVITLTHSGYIKRISADTYSSQRRGGKGIQ 532 Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEAIQLLIDLNHN 599 A+ KE D ++ + T +L + G+ Y L A + +GR G + LI + + Sbjct: 533 AMSTKEDDFVEHLMITSTHSDVLFFTNKGRVYKLRAYEVHDAGRQAKGTNLINLIAIEPD 592 Query: 600 QDIVTAFVYDSTCK---LLVVSSKGNAFIVEESEI--IANTRK-GKTFLKVSSEEKMKLV 653 + I T K L + + +G IV+++ + N RK G + + +++ V Sbjct: 593 EKIQTVLTVTDEKKEGFLFMGTKQG---IVKKTPLSEFKNLRKNGLIAISLKDGDELLKV 649 Query: 654 VKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKIC---EG 708 GD ++ VV +N + F+ + M R GV+ + K+ I+ +C I E Sbjct: 650 KNTYGDANIMVVTQNGYAVKFNERDVRSMGRTASGVKAINLKEDDIA--VCMDIAVDGEE 707 Query: 709 LTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750 L I G Y + L RGGVG + K ++GK Sbjct: 708 LLVISENG--YGKRTPIAEYKLQNRGGVGLITYKISEKTGKL 747 >gi|255745655|ref|ZP_05419603.1| DNA gyrase subunit A [Vibrio cholera CIRS 101] gi|255736730|gb|EET92127.1| DNA gyrase subunit A [Vibrio cholera CIRS 101] Length = 894 Score = 427 bits (1098), Expect = e-117, Method: Compositional matrix adjust. Identities = 258/646 (39%), Positives = 378/646 (58%), Gaps = 64/646 (9%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + V++ L YL YA+S I RA+PD+RDG KPVHRR++ AM+ +G D+ A+KKSA Sbjct: 8 ITPVNIEDELRSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKKSA 67 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG+IDGDSAAA RYTE RM Sbjct: 68 RVVGDVIGKYHPHGDIAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVRM 127 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 +++A +L +D++ VD+ Y+ + P V P+K PNLL NG SGIAVGMAT+IP HN+ Sbjct: 128 SKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGASGIAVGMATNIPPHNL 187 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ + LA IDN I+I++L++YI GPDFPT +I R+ I+++Y+ GRG +R++ Sbjct: 188 GEVIDGCLAYIDNEAITIDELMDYIPGPDFPTAALI-SGRKGIIDAYKTGRGKVYMRSKA 246 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFP 315 +E G I+V+EIPYQV K+RLIEKIAEL+ K++ + +RDES +D +RIV+ Sbjct: 247 EIETDKNGKETIIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDGMRIVIEC 306 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 K R ++++ +++ + ++T F +NM L G+ P++ L +LK ++ HRREV+ RR Sbjct: 307 K-RDAVGEVVLNNLYANTQLQTTFGINMVALDNGQ-PKLFNLKEMLKCFVDHRREVVTRR 364 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR------------ 420 + F ++ R IL+GL +A NIDEII +IR P K +++R Sbjct: 365 TIFELRKARERAHILEGLALALANIDEIIELIRRAATPAEAKEGLIARGWDLGNVAAMLE 424 Query: 421 ----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458 + LTE Q AIL+LRL L LE +I E LL E Sbjct: 425 RAGTDAARPEWLEPQYGIRDGKYFLTEQQAQAILDLRLHKLTGLEHEKILDEYKQLLEEI 484 Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518 + +L S ++ I E+ ++ FS + RRT E++ A + +I +E Sbjct: 485 AALMHILASTERLMEVIREELEAIRAGFSDA-----RRT---EITAATHDIDMEELIARE 536 Query: 519 PITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570 + V +S+ G+++ + + SA KE D ++ L A+T D ILL ST G Sbjct: 537 DVVVTLSHEGYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFSTRG 596 Query: 571 KAYTLPAGNL-LSGR-GHGEAIQLLIDLNHNQDI-----VTAFVYD 609 K Y + L L+ R G+ I L+ L N+ I VT F D Sbjct: 597 KTYRMKVYQLPLASRTARGKPIVNLLPLEENERITAILPVTEFSED 642 >gi|225552441|ref|ZP_03773381.1| DNA gyrase, A subunit [Borrelia sp. SV1] gi|225371439|gb|EEH00869.1| DNA gyrase, A subunit [Borrelia sp. SV1] Length = 810 Score = 427 bits (1098), Expect = e-117, Method: Compositional matrix adjust. Identities = 241/611 (39%), Positives = 378/611 (61%), Gaps = 35/611 (5%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 +E + V + ++ YL YA+S I RA+PD+RDG KPVHRRI+++M EMGL AFK Sbjct: 7 KEQILNVKIEDEIKTSYLNYAMSVIVSRALPDVRDGLKPVHRRILYSMYEMGLRSDKAFK 66 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 K+ RIVG+V+GK HPHGDQS+YD+LVRLAQ F RYP+I GQGNFG+IDGD AA RYTE Sbjct: 67 KAGRIVGDVLGKYHPHGDQSIYDALVRLAQNFSLRYPVIRGQGNFGSIDGDPPAAMRYTE 126 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 A+M ++ E I++ +D++ V+F+ Y++ SEP + PS FP LL NG+SGIAVGMAT++ Sbjct: 127 AKMEKITEYIVRDIDKETVNFKSNYDDSLSEPEIMPSSFPFLLVNGSSGIAVGMATNMAP 186 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN++EIC+A + ++DN S+ LL+ + GPDFPT G IV + ++++++Y+ G+G +R Sbjct: 187 HNLREICDAIVYMLDNENASVFDLLKIVKGPDFPTFGEIVYN-DNLIKAYKTGKGSVVIR 245 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIV 312 AR+ +EE I+VTEIPY V KS L+ K+A L +++ L DIRDES E +RIV Sbjct: 246 ARYHIEERAEDKNAIIVTEIPYTVNKSALLMKVALLAKEEKLEGLLDIRDESDREGIRIV 305 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 L K R DP ++M ++ ++ + F +N N+ + +P+ + L+ +L E++ HR+ ++ Sbjct: 306 LEVK-RGFDPHVIMNLLYEYTEFKKHFSIN-NLALVNGIPKQLNLEELLFEFIEHRKNII 363 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVD 429 RR F ++ + +L+GL IA NIDE+I II++ K +V F L+E Q + Sbjct: 364 ERRIEFDLRKAKEKAHVLEGLNIALNNIDEVIKIIKSSKLAKDAKERLVLNFGLSEIQAN 423 Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAE-KEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488 ++L+++L+ L LE ++++ EL LL+ K+ D LLN +R + I + Sbjct: 424 SVLDMKLQKLTALEIFKLEDELKVLLSLIKDYEDILLNP-----------VRIINIIREE 472 Query: 489 STDLG-----RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD---- 539 + +LG RRT K ++ M +KE I V+++ +G+++ L + Sbjct: 473 TINLGLKFGDERRTKIIYDEEVLKTSMSDLM-QKENIVVMLTKKGFLKRLSQNEYKLQGT 531 Query: 540 ----LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLL 593 LS+ +GD + IAL +T D + ++S +GK Y + A + S G+ I L Sbjct: 532 GGKGLSSFDLNDGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRASKGQNISEL 591 Query: 594 IDLNHNQDIVT 604 ++L ++I+T Sbjct: 592 LNLGDQEEILT 602 >gi|253698661|ref|YP_003019850.1| DNA gyrase subunit alpha [Geobacter sp. M21] gi|251773511|gb|ACT16092.1| DNA gyrase, A subunit [Geobacter sp. M21] Length = 836 Score = 427 bits (1098), Expect = e-117, Method: Compositional matrix adjust. Identities = 248/604 (41%), Positives = 375/604 (62%), Gaps = 26/604 (4%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 N +V++ ++ Y+ YA+S I RA+PD+RDG KPVHRR + AM +M D+ +KKS Sbjct: 6 NKVSVNIEDEMKRSYMDYAMSVIVGRALPDVRDGLKPVHRRCLFAMYDMSNDWNKPYKKS 65 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 AR+VG+VIGK HPHGD +VYD+LVR+AQ F RYPL+ GQGNFG+IDGDS AA RYTE R Sbjct: 66 ARVVGDVIGKYHPHGDTAVYDTLVRMAQDFSLRYPLVDGQGNFGSIDGDSPAAMRYTEIR 125 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 M Q+A +L ++++ V + Y++ EP+V PSKFPNLL NG++GIAVGMAT+IP HN Sbjct: 126 MEQLAHELLADLEKETVPYGPNYDDSLKEPLVLPSKFPNLLVNGSAGIAVGMATNIPPHN 185 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 + E+ + +A+IDNP+++ E+L+E I GPDFPTGG I RE I+++Y GRG ++RA+ Sbjct: 186 LTEVIDGIVAVIDNPQLTFEELVELIPGPDFPTGGFIY-GREGIMKAYSTGRGIIQMRAK 244 Query: 256 WCVEEVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVL 313 +E + IVVTEIPYQV K+RL+EKIAEL+ K+I + D+RDES E +RIV+ Sbjct: 245 VQIETQKKTERQSIVVTEIPYQVNKARLVEKIAELVKEKKIEGISDLRDESDREGMRIVI 304 Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373 K + +P +L+ ++ + M++ F + M + R P+V+ L + ++ HR+E++ Sbjct: 305 ELK-KDENPTILLNHLYKQTQMQSSFGIIMLAIVNSR-PRVLTLRETIDFFIEHRKEIVT 362 Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVDA 430 RR+ F ++ + R IL+GL IA N+DE+IA+I+ P K ++ RF L++ Q A Sbjct: 363 RRTIFDLKKAEARAHILEGLKIALDNLDEVIALIKASASPAEAKAGLMERFGLSDLQAQA 422 Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490 IL++RL L LE +I EL +L ++ +L S + I E+ E+K+ F Sbjct: 423 ILDMRLHRLTGLERDKIMEELREILKYIARLKEILASEAEILKIIVGELVELKDKF---- 478 Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSA 542 G +R + + AD +L+ ++E E + V IS+ G+I R+ + + Sbjct: 479 --GDKRRSEIVMQTAD-ISLEDTIVE-EDMVVTISHTGYIKRNAVTLYRAQRRGGKGKTG 534 Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEAIQLLIDLNHNQ 600 + KE D ++ A T D ++ + GK Y L + +GR G+AI L++L N+ Sbjct: 535 MKTKEEDFVEQLFIASTKDYLMFFTDAGKVYWLKVYEIPEAGRAARGKAIVNLLNLAANE 594 Query: 601 DIVT 604 I T Sbjct: 595 KITT 598 >gi|219668704|ref|YP_002459139.1| DNA gyrase subunit alpha [Desulfitobacterium hafniense DCB-2] gi|219538964|gb|ACL20703.1| DNA gyrase, A subunit [Desulfitobacterium hafniense DCB-2] Length = 808 Score = 427 bits (1098), Expect = e-117, Method: Compositional matrix adjust. Identities = 232/605 (38%), Positives = 362/605 (59%), Gaps = 19/605 (3%) Query: 11 TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70 ++ EEN+ SL L E YL Y+ I +RA+PD+RDG KPVHRRII+AM E+G+ Sbjct: 2 SIPEENITQRSLEEVLPESYLGYSKHVILQRAVPDVRDGLKPVHRRIIYAMDELGMTPDK 61 Query: 71 AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130 + KSAR+VG+ +GK HPHGD S+YD+ VR+AQP+ RYPLI GQGNFG+IDGD AAA R Sbjct: 62 PYSKSARLVGDCMGKYHPHGDSSIYDAAVRMAQPWATRYPLIDGQGNFGSIDGDGAAAMR 121 Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190 YTE RMT +++L+ Q +++D + F+ Y++ + EP+V PS FPNLL NG SGIAVGMA++ Sbjct: 122 YTEMRMTHLSQLMTQDIEKDVIPFKPNYDQREKEPIVLPSPFPNLLVNGGSGIAVGMASN 181 Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250 IP HN++E+ A + IDNP +++E+L+E + GPDFPTGG+I+ S + E+YR GRG Sbjct: 182 IPPHNLREVVAALILQIDNPHVTLEQLMEKVKGPDFPTGGLIIGS-QGFTEAYRSGRGKV 240 Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDV 309 +R + +E G IV+TEIP+QV KS L KI +I + ++RDES E + Sbjct: 241 TMRGKAIIESGKNGKSLIVITEIPFQVSKSTLAAKIEAQSENGKIEGISEVRDESDREGI 300 Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369 R+V+ K + DP +++ ++ + ++ F + V+S P+V+ L I +L HRR Sbjct: 301 RLVVECK-KDADPKRILKLLYKYTQLQETFGIINLVISEEGTPRVLGLKEINHSYLQHRR 359 Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTEN 426 EV+ RR+ + + R IL+GL+IA N+DE++ IIR+ P K +++RF +E Sbjct: 360 EVVLRRTEYELAKAKARAHILEGLVIAINNLDEVLQIIRSSKTPALAKAGLITRFEFSEV 419 Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486 Q AIL+++L+ L LE I+ E +L +++S+L + + I E++++ + + Sbjct: 420 QAQAILDMKLQHLTNLELDGIRKEYAEILKLIAELESILADINKVYTIIKNELKQIADQY 479 Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHS----VDLSA 542 RRT D+ ++P+ V+++ +G+I+ + + + ++ A Sbjct: 480 GDE-----RRTLILPEDVGDEVDYSAFEEPEKPMEVLLTRKGFIKQIPTPTRRSQINAIA 534 Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRG---HGEAIQLLIDLNHN 599 FK+GD L + + D + + GK Y A L++ G G A+ L L Sbjct: 535 FAFKDGDVLLEHVSCTSKDTLYFFTHSGKYYDAKA-KLVAEAGAKEKGRAVNNLFPLPEE 593 Query: 600 QDIVT 604 + IV Sbjct: 594 ERIVA 598 >gi|160946609|ref|ZP_02093812.1| hypothetical protein PEPMIC_00567 [Parvimonas micra ATCC 33270] gi|158446993|gb|EDP23988.1| hypothetical protein PEPMIC_00567 [Parvimonas micra ATCC 33270] Length = 809 Score = 427 bits (1098), Expect = e-117, Method: Compositional matrix adjust. Identities = 262/690 (37%), Positives = 409/690 (59%), Gaps = 29/690 (4%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 N+ V + +++ YL YA+S I RA+PD+RDG KPVHRRII+AM +GL +KKS Sbjct: 9 NIVDVDIEKEMKKSYLEYAMSVIVARALPDVRDGLKPVHRRIIYAMQGLGLLPDKPYKKS 68 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 +R+VGEV+GK HPHGD ++YD+ VRLAQ F RYPL+ GQGNFG IDGD AAA RYTE R Sbjct: 69 SRLVGEVMGKYHPHGDSAIYDATVRLAQDFNLRYPLVDGQGNFGTIDGDGAAAPRYTEVR 128 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 M ++A +L+ +++D VDF Y+E + EPVV PSKFPNLL NG +GIAVGMAT++P HN Sbjct: 129 MQKLALEMLRDINKDTVDFAPNYDENEKEPVVLPSKFPNLLVNGAAGIAVGMATNMPPHN 188 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 + E+ +A IDN +IS+++L++++ GPDFPTG I+ E I ++Y GRG VRA Sbjct: 189 LNEVIDATCEYIDNFDISVDELMKFVKGPDFPTGANIM-GLEGIKQAYHTGRGKITVRAV 247 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLF 314 +EE + I+VTEIPYQV K+ LI KI ELI KRI + D+RDES + +RIV+ Sbjct: 248 ANIEEHNNKTR-IIVTEIPYQVNKTNLIMKIVELIKDKRIEGISDLRDESNMKGIRIVIE 306 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K R +P++++ +++ + M+T F + +N+ + P+V+ L ++ ++ H+R+V+ R Sbjct: 307 LK-RDANPNIILNNLYKHTQMQTTFGV-INLALVNGEPKVLNLKELIGHYVEHQRDVITR 364 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDKPKPVMVSRFSLTENQVDAILN 433 R F ++ + R I++GLL A +IDEII IIR + + ++ RF T+ Q ++IL Sbjct: 365 RCRFELKKAEDRAHIVEGLLKAIDHIDEIIKIIRASYSDAQEKLMERFGFTKIQAESILE 424 Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493 +RLR L+ LE +++ E ++L+ E ++ +L + + N I E+ E+KE F Sbjct: 425 MRLRRLQGLEREKLQDEYNSLIKEIARLKEILGNERLILNIIKEELIEIKEKFGDD---- 480 Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS--------ALHF 545 RRT E+ + +I++E + + ++ +G+I+ + S + + AL Sbjct: 481 -RRT---EIKPNFDEIEIEELIKEEDVVITLTKQGYIKRIPSDTYKVQNRGGKGVVALTT 536 Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIV 603 KE D + T IL + G+ Y L A + G+ G+ I L++L H + + Sbjct: 537 KEDDYVDSLFVTSTHSLILFFTNKGRVYKLKAYEIPEGKRQAKGQNIINLLELMHGEKVN 596 Query: 604 TAF-VYDS-TCKLLVVSSKGNAFIVEESEIIANTRK--GKTFLKVSSEEKMKLVVKVTGD 659 V D+ + + L++++K E+ RK K V +E +++ V D Sbjct: 597 AVIPVKDAGSDEYLIMATKKGTIKRTSVELFKAIRKVGMKAINLVDDDELIQVRVSTVED 656 Query: 660 HVAVVGENRKLLIFSIDQIPEMSR-GKGVR 688 +V + + F + I E+ R G+GVR Sbjct: 657 SAMLVTKKGLAIKFELSDIREIGRTGQGVR 686 >gi|329576323|gb|EGG57838.1| DNA gyrase, A subunit [Enterococcus faecalis TX1467] Length = 833 Score = 427 bits (1098), Expect = e-117, Method: Compositional matrix adjust. Identities = 264/770 (34%), Positives = 439/770 (57%), Gaps = 55/770 (7%) Query: 13 VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72 ++EN++ V+L ++E ++ YA+S I RA+PD+RDG KPVHRRI++ M+E+G+ Sbjct: 5 IKENIQDVNLTSEMKESFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPH 64 Query: 73 KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132 KKSARIVG+V+GK HPHGD ++Y+S+VR+AQPF R L+ G GNFG++DGD AAA RYT Sbjct: 65 KKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRAMLVDGHGNFGSVDGDGAAAMRYT 124 Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192 EARM+++A +L+ ++++ VDF+ Y++ + EPVV P++FPNLL NGT+GIAVGMAT+IP Sbjct: 125 EARMSKIALEMLRDINKNTVDFQGNYDDSEQEPVVLPARFPNLLVNGTTGIAVGMATNIP 184 Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252 HN+ E+ +A L+DNP+++ +L+E + GPDFPTGG+++ + I +Y G+G V Sbjct: 185 PHNLSEVIDATSLLMDNPDVTTNELMEVLPGPDFPTGGLVM-GKSGIRRAYETGKGSITV 243 Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312 RA+ + E+ G I+VTE+PY V K++LIE+I+EL KRI + D+RDES+ + + Sbjct: 244 RAKVELTEMPNGKERILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMRI 303 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 R + +++ +++ ++ ++T F NM + G VP+++ L IL+ ++ H++EV+ Sbjct: 304 SIDVRRDVSASVVLNNLYKMTALQTSFGFNMLAIEKG-VPKILSLKRILENYVEHQKEVI 362 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVD 429 RR+ F + R IL+GL IA +IDEIIAIIR ++D+ K ++ RF ++ Q Sbjct: 363 TRRTIFGKNKAEARAHILEGLRIALDHIDEIIAIIRGSQSDDEAKATLIERFEFSDRQAQ 422 Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489 AIL++RLR L LE +I++E LL ++ +L ++ I E+ +V+ F + Sbjct: 423 AILDMRLRRLTGLERDKIENEYQELLKFIADLEDILARPERVIEIIKTELNDVRTKFGDA 482 Query: 490 TDLGRRRTTFC--EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------D 539 RRT EV + + +IE+E + + ++N G+I+ + + Sbjct: 483 -----RRTELLVGEVL----SLEDEDLIEEEEVVITLTNNGYIKRMANSEFRAQRRGGRG 533 Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY---------------TLPAGNLLSGR 584 + + + D +K + T D +L + GK Y +P NLL G Sbjct: 534 VQGMGVHDDDFVKNLVSCSTHDTLLFFTNTGKVYRAKGYEIPEYGRTAKGIPVINLL-GI 592 Query: 585 GHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV 644 E IQ +I + + +++ +T K V + AF S I +N G + + Sbjct: 593 DSAEKIQAIISVEGKAE-AGKYLFFTTLKGTVKRTAVTAF----SNIRSN---GLIAISL 644 Query: 645 SSEEKMKLVVKVTGDHVAVVGENRKL-LIFSIDQIPEMSRG----KGVRLQSYKDGGISD 699 ++++ VV G+ ++G + + F + + +M R +G+RL+ D + Sbjct: 645 KEDDELVNVVTTNGNQKMIIGTHAGYSVTFDENTVRDMGRTASGVRGIRLRE-NDYVVGA 703 Query: 700 VICFKICEGLTWIDSA-GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG 748 I + E L ++ G+ SE + G GK ++ K P +G Sbjct: 704 AILDENKEVLVITENGYGKRTKASEYPVKGRGGKGIKTANITEKNGPLAG 753 >gi|95929990|ref|ZP_01312730.1| DNA gyrase, A subunit [Desulfuromonas acetoxidans DSM 684] gi|95133959|gb|EAT15618.1| DNA gyrase, A subunit [Desulfuromonas acetoxidans DSM 684] Length = 833 Score = 427 bits (1098), Expect = e-117, Method: Compositional matrix adjust. Identities = 250/649 (38%), Positives = 397/649 (61%), Gaps = 38/649 (5%) Query: 12 LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71 L ++N +V++ + + Y+ YA+S I RA+PD+RDG KPVHRR++ AM E+G ++ Sbjct: 2 LSQQNKVSVNIENEMRKSYMDYAMSVIIGRALPDIRDGLKPVHRRVLFAMHELGNEYNKP 61 Query: 72 FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131 +KKSAR+VG+VIGK HPHGD +VYD++VR+AQ F R PL+ GQGNFG+IDGDSAAA RY Sbjct: 62 YKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQSFSMRNPLVDGQGNFGSIDGDSAAAMRY 121 Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191 TE RM +++ +L ++++ VDF Y++ SEP+V P KFPNLL NG+ GIAVGMAT I Sbjct: 122 TEVRMAKLSHELLADIEKETVDFGPNYDDSLSEPIVLPCKFPNLLVNGSEGIAVGMATKI 181 Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251 P HN+ E+ +++ID+P ++ E L++ I GPDFPT G I+ E + E+YR GRG + Sbjct: 182 PPHNLGEVINGLVSIIDDPTLTFEDLIQIIPGPDFPTAGFIL-GHEDVQEAYRTGRGIIQ 240 Query: 252 VRARWCVEEVGRGSW-CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-V 309 +RA+ VE R S IV+ EIPYQV K++LIEKIA LI K+I + D+RDES D + Sbjct: 241 MRAKAMVEIDRRTSRESIVINEIPYQVNKAKLIEKIANLIKEKKIEGISDLRDESDRDGM 300 Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369 RIV+ K ++ +++ ++ ++ M++ F + M + G+ P+++ L +L +++ HR+ Sbjct: 301 RIVIDLKREAV-AGVVLNQLYKMTAMQSSFGIIMLAIVGGQ-PKILTLREVLDQFIDHRK 358 Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTEN 426 E++ RR F ++ + R IL+GL IA N+DE+I II+ N + K ++ RF+ ++ Sbjct: 359 EIVTRRCVFELKKAEARAHILEGLKIALENLDELIQIIKTSANSQEAKARLIERFTFSDI 418 Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486 Q AIL++RL L LE +I +E + +LA+ ++ +L S + I E+ EVKE + Sbjct: 419 QAQAILDMRLHRLTGLERDKIINEYNEVLAQIARLKEILGSEVEILKIIRAELIEVKENY 478 Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSV 538 RRT +++ +++ ++E E + V +S+ G+I RS + Sbjct: 479 DDP-----RRTEI--IAKTKDLSIEDLIVE-EDMVVTVSHSGYIKRNAVSLYRSQRRGGK 530 Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDL 596 + + KE D ++ A T IL+ + GK Y L + G G+AI L+ L Sbjct: 531 GKTGMRPKEEDFVEKLFIASTHSYILVFTDQGKVYWLKVHEIPQGGRAARGKAIVNLLQL 590 Query: 597 NHNQDIVT-----AFVYDSTCKLLVVSSKGNAFIVEESEII--ANTRKG 638 + ++T FV D K ++ ++K +V+++E++ AN R+G Sbjct: 591 APEERVMTILPVKEFVED---KYIIAATKNG--VVKKTELMAYANPRQG 634 >gi|73760122|dbj|BAE19968.1| DNA gyrase subunit A [Photobacterium damselae subsp. piscicida] Length = 874 Score = 427 bits (1097), Expect = e-117, Method: Compositional matrix adjust. Identities = 258/639 (40%), Positives = 378/639 (59%), Gaps = 66/639 (10%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + V++ L+ YL YA+S I RA+PD+RDG KPVHRR++ AM+ +G D+ A+KKSA Sbjct: 8 ITPVNIEEELKGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKKSA 67 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG+IDGDSAAA RYTE RM Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVRM 127 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 ++A +L +++D VD+ Y+ + P V P+K PNLL NG+SGIAVGMAT+IP HN+ Sbjct: 128 AKIAHELLADLEKDTVDYVPNYDGTEHIPAVLPTKIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ + LA IDN EI+I++L+EYI GPDFPT +I R+ I+++Y+ GRG +R++ Sbjct: 188 GEVIDGCLAYIDNEEITIDQLMEYIPGPDFPTAAMI-SGRKGIIDAYKTGRGKIYMRSKA 246 Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314 +E E G I+VTEIPYQV K+RLIEKIAEL+ K++ + +RDES +D +RIV+ Sbjct: 247 EIEVEDKNGKETIIVTEIPYQVNKARLIEKIAELVKEKKVEGISRLRDESDKDGMRIVIE 306 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K R ++++ +++ + ++T F +NM L G+ P++ L +LK ++ HRREV+ R Sbjct: 307 CK-RDAVGEVVLNNLYAQTQLQTTFGINMVALDNGQ-PKLFNLKEMLKCFVNHRREVVTR 364 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----------- 420 R+ F ++ R IL+GL +A NIDEII +IR P K +V+R Sbjct: 365 RTIFELRKARDRAHILEGLALALANIDEIIELIRRAPTPAEAKAGLVARGWELGNVAAML 424 Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457 + LTE Q AIL+LRL L LE +I E LL E Sbjct: 425 ERAGTDAARPDWLAEEFGIRDNLYYLTEQQAQAILDLRLHKLTGLEHEKILDEYKALLEE 484 Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517 ++ +L+S ++ I E+ VKE F+ + RRT E++ A + +I + Sbjct: 485 IAELLHILSSAERLMEVIREELELVKEQFNDA-----RRT---EITAATHDIDLEDLINQ 536 Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569 E + V +S+ G+++ + + +A K+ D ++ L A+T D IL ST Sbjct: 537 EDVVVTLSHEGYVKYQVLTDYEAQRRGGKGKAATRMKDEDFIERLLVANTHDTILCFSTR 596 Query: 570 G-----KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIV 603 G K Y LP L S G+ I ++ L N+ I Sbjct: 597 GRMYWLKVYQLP---LASRTARGKPIVNILPLEENERIT 632 >gi|299143457|ref|ZP_07036537.1| DNA gyrase, A subunit [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298517942|gb|EFI41681.1| DNA gyrase, A subunit [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 806 Score = 427 bits (1097), Expect = e-117, Method: Compositional matrix adjust. Identities = 251/627 (40%), Positives = 381/627 (60%), Gaps = 29/627 (4%) Query: 12 LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71 + ++ V V L + + YL Y++S I RA+PD++DG KPVHRRII+ M +GL Sbjct: 4 IYDKGVIDVGLEEKMRKSYLDYSMSVIVSRALPDVKDGLKPVHRRIIYGMQVLGLQPNGP 63 Query: 72 FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131 ++KSAR+VG+V+GK HPHGD S+YD+ VRLAQ F RYPL+ GQGNFGNIDGDSAAA RY Sbjct: 64 YRKSARLVGDVMGKFHPHGDSSIYDAAVRLAQEFNTRYPLVDGQGNFGNIDGDSAAAMRY 123 Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191 TE RMT++ + +L+ +++D VDF+ ++EE+ EPVV PS+FPNLL NG++GIAVGMAT++ Sbjct: 124 TELRMTKLTQEMLRDINKDTVDFKPNFDEEEIEPVVLPSRFPNLLVNGSAGIAVGMATNM 183 Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251 P HN+ E+ ++ IDN EI+I++L+ I GPDFPTG I+ RE I E+Y+ GRG + Sbjct: 184 PPHNLTEVINGTISFIDNEEITIDELMNTIKGPDFPTGAYIM-GREGIKEAYKTGRGKIQ 242 Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVR 310 VRA +EE + IVV EIPYQV KS LI KIAEL+ K I + IRDES + +R Sbjct: 243 VRAVAEIEE-EKNKRRIVVREIPYQVNKSNLIMKIAELVKNKVIDGISAIRDESTRKGIR 301 Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370 I + K R +P++++ ++ + M+T F + +N+ + VP+++ L ++ ++ H+ Sbjct: 302 IAIDLK-RDANPNVVLNKLYKNTQMQTTFGI-INLALVNGVPKILNLKELISYYVDHQIN 359 Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAII---RNEDKPKPVMVSRFSLTENQ 427 V+ RR+ F ++ R I++GL IA NID II I+ RN+D+ K F LTE Q Sbjct: 360 VVTRRTKFDLEKAKARAHIVEGLKIALDNIDRIIEIVRSSRNDDEAKIKFTEEFGLTEIQ 419 Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487 AIL++R+R L LE ++ E L+ + +L + ++ + I E+ E+++ F Sbjct: 420 GQAILDMRIRRLTGLEREKLDEEYKELIRLIAEFTEILENHEKLMSIIKDELIEIRDKFG 479 Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSVD 539 DL RRT S A + L+ +I++E + + ++ G+I+ + K Sbjct: 480 ---DL--RRTVIK--SAAGEIDLED-IIKEEDVVITLTQFGYIKRMPEGTYKPQKRGGRG 531 Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLN 597 +SAL +E D + T D IL + G+AY L A + S + G AI +++L+ Sbjct: 532 ISALTTREEDFVNDLFITSTHDLILFFTNLGRAYVLKAYEIPESSRQSKGTAIINILNLS 591 Query: 598 HN---QDIVTAFVYDSTCKLLVVSSKG 621 N Q I+ YD +++ + G Sbjct: 592 ANEKVQSIIPVREYDPNLNIVMATKDG 618 >gi|308062028|gb|ADO03916.1| DNA gyrase subunit A [Helicobacter pylori Cuz20] Length = 826 Score = 427 bits (1097), Expect = e-117, Method: Compositional matrix adjust. Identities = 249/625 (39%), Positives = 382/625 (61%), Gaps = 46/625 (7%) Query: 4 DNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63 DN+ N +N+ V + ++EE YLAY++S I RA+PD RDG KPVHRRI++AM E Sbjct: 3 DNLINET----KNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHE 58 Query: 64 MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123 +GL A+KKSARIVG+VIGK HPHGD +VYD+LVR+AQ F R L+ GQGNFG+IDG Sbjct: 59 LGLTSKVAYKKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSIDG 118 Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183 D+AAA RYTEARMT+ +E IL+ +D+D +DF Y++ EP + PS+ PNLL NG +GI Sbjct: 119 DNAAAMRYTEARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGI 178 Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243 AVGMATSIP H + EI +A + +++NP ++++LE++ GPDFPTGGII + I+E+Y Sbjct: 179 AVGMATSIPPHRIDEIIDALVHVLENPNAGLDEILEFVKGPDFPTGGIIY-GKAGIIEAY 237 Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303 + GRG +VRA+ VE+ + IV+ E+P+Q K++L+E+I++L K+I + ++RD Sbjct: 238 KTGRGRVKVRAKVHVEKT-KNKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRD 296 Query: 304 ES-AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362 ES E +R+V+ K ++ ++++ ++ L+ MET F + + + + P++ L +L+ Sbjct: 297 ESDREGIRVVIELKRDAM-SEIVLNHLYKLTTMETTFSIILLAI-YNKEPKIFTLLELLR 354 Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVS 419 +L HR+ ++ RR+ F ++ R IL+G LIA NIDEI+ +I+ P K ++ Sbjct: 355 LFLNHRKTIIIRRTIFELEKAKARAHILEGYLIALDNIDEIVRLIKTSQSPEAAKNALME 414 Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479 RF+L+E Q AIL +RL+ L LE +IK E NLL ++ +L S + + E+ Sbjct: 415 RFTLSEIQSKAILEMRLQRLTGLERDKIKEEYQNLLELISDLNGILKSEDRLNEVVKTEL 474 Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539 EVKE FS +RRT EV + +I EP+ V +S +G+++ VD Sbjct: 475 LEVKEQFS-----SQRRTEIQEVYENIDI---EDLIANEPMVVSMSYKGYVK-----RVD 521 Query: 540 LSALHFK-------------EGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLL 581 L A + E D ++ A+T D +L ++ G K Y +P + + Sbjct: 522 LKAYERQNRGGKGKLSGNTYEDDFIENFFVANTHDILLFITNKGQLYRLKVYKIPEASRI 581 Query: 582 SGRGHGEAIQLLIDLNHNQDIVTAF 606 + G+AI LI L+ ++ I+ Sbjct: 582 A---MGKAIVNLISLDPDEKIMATL 603 >gi|317182015|dbj|BAJ59799.1| DNA gyrase subunit A [Helicobacter pylori F57] Length = 828 Score = 427 bits (1097), Expect = e-117, Method: Compositional matrix adjust. Identities = 249/625 (39%), Positives = 383/625 (61%), Gaps = 46/625 (7%) Query: 4 DNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63 DN+ N +N+ V + ++EE YLAY++S I RA+PD RDG KPVHRRI++AM E Sbjct: 3 DNLINET----KNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHE 58 Query: 64 MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123 +GL A+KKSARIVG+VIGK HPHGD +VYD+LVR+AQ F R L+ GQGNFG+IDG Sbjct: 59 LGLTSKVAYKKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSIDG 118 Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183 D+AAA RYTEARMT+ +E IL+ +D+D +DF Y++ EP + PS+ PNLL NG +GI Sbjct: 119 DNAAAMRYTEARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGI 178 Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243 AVGMATSIP H + EI +A + +++NP ++++LE++ GPDFPTGGII + I+E+Y Sbjct: 179 AVGMATSIPPHRIDEIIDALVHVLENPNAGLDEILEFVKGPDFPTGGIIY-GKAGIIEAY 237 Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303 + GRG +VRA+ VE+ + IV+ E+P+Q K++L+E+I++L K+I + ++RD Sbjct: 238 KTGRGRVKVRAKVHVEKT-KNKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRD 296 Query: 304 ES-AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362 ES E +R+V+ K ++ ++++ ++ L+ MET F + + + + P++ L +L+ Sbjct: 297 ESDREGIRVVIELKRDAM-SEIVLNHLYKLTTMETTFSIILLAI-YNKEPKIFTLLELLR 354 Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVS 419 +L HR+ ++ RR+ F ++ R IL+G LIA NIDEI+ +I+ P K ++ Sbjct: 355 LFLNHRKTIIIRRTIFELEKAKARAHILEGYLIALDNIDEIVQLIKTSQSPEAAKNALME 414 Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479 RF+L+E Q AIL +RL+ L LE +IK E NLL ++ +L S + + E+ Sbjct: 415 RFTLSEIQSKAILEMRLQRLTGLERDKIKEEYQNLLELISDLNGILKSEDRLNEVVKTEL 474 Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539 EVKE FS +RRT E+ A + + +I EP+ V +S +G+++ VD Sbjct: 475 LEVKEQFS-----SQRRT---EIQEAYENIDIEDLIANEPMVVSMSYKGYVK-----RVD 521 Query: 540 LSALHFK-------------EGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLL 581 L A + E D ++ A+T D +L ++ G K Y +P + + Sbjct: 522 LKAYERQNRGGKGKLSGNTYEDDFIENFFVANTHDILLFITNKGQLYHLKVYKIPEASRI 581 Query: 582 SGRGHGEAIQLLIDLNHNQDIVTAF 606 + G+AI LI L ++ I+ Sbjct: 582 A---MGKAIVNLISLAPDEKIMATL 603 >gi|254226423|ref|ZP_04920010.1| DNA gyrase, subunit A [Vibrio cholerae V51] gi|125621045|gb|EAZ49392.1| DNA gyrase, subunit A [Vibrio cholerae V51] Length = 770 Score = 427 bits (1097), Expect = e-117, Method: Compositional matrix adjust. Identities = 257/646 (39%), Positives = 379/646 (58%), Gaps = 64/646 (9%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + V++ L YL YA+S I RA+PD+RDG KPVHRR++ AM+ +G D+ A+KKSA Sbjct: 8 ITPVNIEDELRSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKKSA 67 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG+IDGDSAAA RYTE RM Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVRM 127 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 +++A +L +D++ VD+ Y+ + P V P+K PNLL NG SGIAVGMAT+IP HN+ Sbjct: 128 SKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGASGIAVGMATNIPPHNL 187 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ + LA IDN I+I++L++YI GPDFPT +I R+ I+++Y+ GRG +R++ Sbjct: 188 GEVIDGCLAYIDNESITIDELMDYIPGPDFPTAALI-SGRKGIIDAYKTGRGKVYMRSKA 246 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFP 315 +E G I+V+EIPYQV K+RLIEKIAEL+ K++ + +RDES +D +RIV+ Sbjct: 247 EIETDKNGKETIIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDGMRIVIEC 306 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 K ++ ++++ +++ + ++T F +NM L G+ P++ L +LK ++ HRREV+ RR Sbjct: 307 KRDAVG-EVVLNNLYANTQLQTTFGINMVALDNGQ-PKLFNLKEMLKCFVDHRREVVTRR 364 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR------------ 420 + F ++ R IL+GL +A NIDEII +IR P K +++R Sbjct: 365 TIFELRKARERAHILEGLALALANIDEIIELIRRAATPAEAKEGLIARGWDLGNVAAMLE 424 Query: 421 ----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458 + LTE Q AIL+LRL L LE +I E LL E Sbjct: 425 RAGTDAARPEWLEPQYGIRDGKYFLTEQQAQAILDLRLHKLTGLEHEKILDEYKQLLEEI 484 Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518 + +L S ++ I E+ ++ FS + RRT E++ A + +I +E Sbjct: 485 AALMHILASTERLMEVIREELEAIRAGFSDA-----RRT---EITAATHDIDMEELIARE 536 Query: 519 PITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570 + V +S+ G+++ + + SA KE D ++ L A+T D ILL ST G Sbjct: 537 DVVVTLSHEGYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFSTRG 596 Query: 571 KAYTLPAGNL-LSGR-GHGEAIQLLIDLNHNQDI-----VTAFVYD 609 K Y + L L+ R G+ I L+ L N+ I VT F D Sbjct: 597 KTYRMKVYQLPLASRTARGKPIVNLLPLEENERITAILPVTEFSED 642 >gi|94676657|ref|YP_588831.1| DNA gyrase, A subunit [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] gi|94219807|gb|ABF13966.1| DNA gyrase, A subunit [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] Length = 847 Score = 427 bits (1097), Expect = e-117, Method: Compositional matrix adjust. Identities = 275/729 (37%), Positives = 413/729 (56%), Gaps = 77/729 (10%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 VS+ L+ YL YA+S I RA+PD+RDG KPVHRR++ AMS +G D+ +KKSARIV Sbjct: 14 VSIEEELKRSYLDYAMSVIIGRALPDVRDGLKPVHRRVLFAMSILGNDWNKPYKKSARIV 73 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPH D +VYD++VR+AQ F RY L+ GQGNFG+IDGDSAAA RYTE RM+++ Sbjct: 74 GDVIGKYHPHSDTAVYDAIVRMAQTFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVRMSKI 133 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A +L +++D V++ Y+ + P V P++ PN+L NG+SGIAVGMAT+IP HN+ EI Sbjct: 134 AHELLIDLEKDTVNYVPNYDSTEQIPEVMPTRMPNILINGSSGIAVGMATNIPPHNLFEI 193 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 + LA ID+ +ISIE+L++YI GPDFPT II ++ I E+YR GRG +RAR VE Sbjct: 194 IDGCLAYIDDDKISIEELMKYIPGPDFPTAAII-NGKQGIEEAYRTGRGKICIRARAIVE 252 Query: 260 -EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318 E G IVV+EIPYQV K+RLIEKIA+LI KRI + +RDES +D ++ R Sbjct: 253 VEANTGREIIVVSEIPYQVNKARLIEKIADLIKEKRIEGISVLRDESDKDGMRIIIGIKR 312 Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378 ++++ +++ ++ ++ F +NM L+ G+ P++ L IL ++ HR++++ RR+ F Sbjct: 313 DAVAEVVLNNLYSMTQLQVSFSINMVALNNGQ-PKIFSLKEILSAFICHRQDIITRRTIF 371 Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP------------------------- 413 ++ RV IL+ L++A NI+ II + RN + P Sbjct: 372 ELRKARERVHILEALVVAQANIESIITLTRNANTPVEAKDKLLISAWNLGTIASMQCREV 431 Query: 414 ----KP--------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKI 461 +P + R+ LTE QV AIL+LRL +L LE ++ E LL + + Sbjct: 432 HHMVRPEWLEEKYGIHDGRYYLTEKQVQAILDLRLYNLTSLEYSKLMIEHKELLTKIVDL 491 Query: 462 DSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPIT 521 +LN ++ I E+ +++ + RRT E++ + + MI KE + Sbjct: 492 LRILNEPERLMEVIREELNYIQKQYKDP-----RRT---EITTISSNLVIEDMINKENVV 543 Query: 522 VVISNRGWIRSLKSHSVDL--------SALHFKEGDSLKIALHAHTTDRILLLSTDG--- 570 V +S +G+++ + D SA+ KE D + L A+T D ILL S+ G Sbjct: 544 VTLSYQGYVKYQPLNDYDAQKRGGKGKSAVKMKEEDFIHSLLVANTHDTILLFSSRGRMY 603 Query: 571 --KAYTLPAGNLLSGRG-HGEAIQLLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAF 624 K Y LPA + RG G I L+ L N+ I T Y+ C + + ++ G Sbjct: 604 WMKVYQLPA----ASRGSRGRPIVNLLPLETNERITTILPVRQYEEGCNVFMATASGT-- 657 Query: 625 IVEESEIIANTR-KGKTFLKVSSEEKMKLV-VKVT--GDHVAVVGENRKLLIFSIDQIPE 680 V+++ +IA +R + + V+ E +L+ V VT + V + K++ F Q+ Sbjct: 658 -VKKTALIAFSRPRSAGIIAVNLHEGDELIGVNVTNGNNEVMLFSAYGKVVRFPETQVRS 716 Query: 681 MSR-GKGVR 688 M R GVR Sbjct: 717 MGRTATGVR 725 >gi|268316831|ref|YP_003290550.1| DNA topoisomerase (ATP-hydrolyzing) [Rhodothermus marinus DSM 4252] gi|262334365|gb|ACY48162.1| DNA topoisomerase (ATP-hydrolyzing) [Rhodothermus marinus DSM 4252] Length = 775 Score = 427 bits (1097), Expect = e-117, Method: Compositional matrix adjust. Identities = 270/743 (36%), Positives = 413/743 (55%), Gaps = 56/743 (7%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM-SEMGLDFGAAFKKS 75 V+ + L ERYL +ALS I RA+PD+RDG KPV RRI++AM + L A ++KS Sbjct: 4 VEVIPLHETTRERYLNFALSVITSRALPDIRDGLKPVQRRILYAMFQHLRLYPDARYRKS 63 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 A IVGEV+GK HPHGD ++Y+++VR+AQ F RYPL+ G GNFG+IDGD+AAA RYTEAR Sbjct: 64 ATIVGEVMGKYHPHGDAAIYEAMVRMAQDFSLRYPLVDGHGNFGSIDGDAAAAMRYTEAR 123 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 + +A +L+ + V R ++ EPVV P++FPNLL NG SGIAVGMAT+IP HN Sbjct: 124 LRPLAMQLLEELRRQTVPMRPNFDGTLFEPVVLPARFPNLLVNGASGIAVGMATNIPPHN 183 Query: 196 VQEICEAALALIDNPEISIEKLLE-YIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 + E+ +A + LID P +E +LE +I GPDFPTGG ++ +RE ++E YR G G +R Sbjct: 184 LGEVIDALIYLIDVPNAPLETILERFIQGPDFPTGGRVLNTREELLEIYRTGEGPIELRG 243 Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314 + +E G IV+T IPY + K+ L+EKIAE I A ++P L D+RDES ++VRIVL Sbjct: 244 EYKLE----GKTRIVITSIPYGIAKADLVEKIAEHIAAGKVPQLSDVRDESTDEVRIVL- 298 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQV-----MPLDGILKEWLAHRR 369 R DP+ M +F + ++TRF +N+ L P+V + L +L+ +L R Sbjct: 299 ELRRGADPEAAMAYLFRHTPLQTRFHVNLTCLVPTANPEVAAPRKVDLMTMLRAFLEFRM 358 Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTEN 426 EV+ RR + ++ ++RR+ IL+G + +DE I IIR ++ RF L + Sbjct: 359 EVVVRRLRYDLEQLERRIHILRGFEKIFGALDEAIRIIRAARDKADAAQRLMHRFQLDDV 418 Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486 Q DAIL +L L +LE I+ EL+ + ++ +LL +W I E++ +K+ F Sbjct: 419 QADAILETKLYKLSRLEIEAIRQELEEKERQAAELRALLADEAARWGLIREELKAIKKQF 478 Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546 + + RRT + Q+A I E + V+++ GW++ +S++ D+ ++ + Sbjct: 479 ADA-----RRTVIAGPDEGFEYN-QEAYIVDEDVYVIVTRDGWVKRQRSYT-DVQSIRVR 531 Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606 EGD++ L T + + G+ YT +L S G+G+ +Q L D + + +V Sbjct: 532 EGDTVGWVLPGSTRATVGFFTNYGRCYTTRIDSLPSTTGYGDPVQKLFDFSDRERVVGVV 591 Query: 607 VYDS-TCKLLVVSSKGNAFIVEESE-------IIANTRKGKT------------------ 640 V+D V + + E E ++A TRKG+T Sbjct: 592 VFDERALPRPVPEPEVEPALFENGEQEAPRVHVVAVTRKGQTLRIPIDGFREPSTKNGRL 651 Query: 641 FLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDGGIS 698 F+++ +++ V GD +V + +LIF + QIP + S KGV + + G Sbjct: 652 FMRLEKGDEVLGVEVAAGDENVCLASREGYVLIFPVHQIPPVKSAAKGV--IAMRLGRGD 709 Query: 699 DVICFKIC----EGLTWIDSAGR 717 +V+ F + EGL S GR Sbjct: 710 EVLGFTLASAAREGLEVETSRGR 732 >gi|217033673|ref|ZP_03439100.1| hypothetical protein HP9810_5g15 [Helicobacter pylori 98-10] gi|216943862|gb|EEC23299.1| hypothetical protein HP9810_5g15 [Helicobacter pylori 98-10] Length = 828 Score = 427 bits (1097), Expect = e-117, Method: Compositional matrix adjust. Identities = 250/625 (40%), Positives = 381/625 (60%), Gaps = 46/625 (7%) Query: 4 DNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63 DN+ N +N+ V + ++EE YLAY++S I RA+PD RDG KPVHRRI++AM E Sbjct: 3 DNLINET----KNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHE 58 Query: 64 MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123 +GL A+KKSARIVG+VIGK HPHGD +VYD+LVR+AQ F R L+ GQGNFG+IDG Sbjct: 59 LGLTSKVAYKKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSIDG 118 Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183 D+AAA RYTEARMT+ +E IL+ +D+D +DF Y++ EP + PS+ PNLL NG SGI Sbjct: 119 DNAAAMRYTEARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGASGI 178 Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243 AVGMATSIP H + EI +A + +++NP ++++LE++ GPDFPTGGII + I+E+Y Sbjct: 179 AVGMATSIPPHRIDEIIDALVHVLENPNAGLDEILEFVKGPDFPTGGIIY-GKAGIIEAY 237 Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303 + GRG +VRA+ VE+ + IV+ E+P+Q K++L+E+I++L K+I + ++RD Sbjct: 238 KTGRGRVKVRAKVHVEKT-KNKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRD 296 Query: 304 ES-AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362 ES E +R+V+ K ++ ++++ ++ L+ MET F + + + + P++ L +L+ Sbjct: 297 ESDREGIRVVIELKRDAM-SEIVLNHLYKLTTMETTFSIILLAI-YNKEPKIFTLLELLR 354 Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVS 419 +L HR+ ++ RR+ F ++ R IL+G LIA NIDEI+ +I+ P K ++ Sbjct: 355 LFLNHRKTIIIRRTIFELEKAKARAHILEGYLIALDNIDEIVRLIKTSQSPEAAKNALME 414 Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479 RF+L+E Q AIL +RL+ L LE +IK E NLL ++ +L S + + E+ Sbjct: 415 RFTLSEIQSKAILEMRLQRLTGLERDKIKEEYQNLLELISDLNGILKSEDRLNEVVKTEL 474 Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539 EVKE FS +RRT EV + +I EP+ V +S +G+++ VD Sbjct: 475 LEVKEQFS-----SQRRTEIQEVYENIDI---EDLIANEPMVVSMSYKGYVK-----RVD 521 Query: 540 LSALHFK-------------EGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLL 581 L A + E D ++ A+T D +L ++ G K Y +P + + Sbjct: 522 LKAYERQNRGGKGKLSGNTYEDDFIENFFVANTHDILLFITNKGQLYHLKVYKIPEASRI 581 Query: 582 SGRGHGEAIQLLIDLNHNQDIVTAF 606 + G+AI LI L ++ I+ Sbjct: 582 A---MGKAIVNLISLAPDEKIMATL 603 >gi|325832324|ref|ZP_08165323.1| DNA gyrase, A subunit [Eggerthella sp. HGA1] gi|325486160|gb|EGC88614.1| DNA gyrase, A subunit [Eggerthella sp. HGA1] Length = 932 Score = 426 bits (1096), Expect = e-117, Method: Compositional matrix adjust. Identities = 242/599 (40%), Positives = 353/599 (58%), Gaps = 23/599 (3%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 V++ L ++ +L YA+S I RA+PD+RDG KPVHRRI++AM+E G KSA Sbjct: 86 VRSAYLGKEMQTSFLEYAMSVIVSRALPDVRDGLKPVHRRILYAMNESGYTPNRPHMKSA 145 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R VG+VIGK HPHGD +VYD++VRLAQPF R PL+ G GNFG+IDGD AAA RYTE+R+ Sbjct: 146 RTVGDVIGKYHPHGDSAVYDTMVRLAQPFSMRVPLVDGHGNFGSIDGDGAAAMRYTESRL 205 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 +VA +L+ +D++ VDF+ Y+E EP V P++FPNLL NG+ GIAVGMAT+IP HN+ Sbjct: 206 DKVAMELLRDLDKETVDFQPNYDESLEEPTVLPARFPNLLVNGSQGIAVGMATNIPPHNL 265 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E +A ++DNP+++ E+L++ + GPDFPTGGII+ ++ I ++Y GRG VRA+ Sbjct: 266 GETIDATCLMLDNPDVTTEELMKALPGPDFPTGGIIM-GKKGIRDAYETGRGSLTVRAKC 324 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316 VEE G IVVTEIPYQV + RL+EK+ EL+ K++P + +I D + ++ Sbjct: 325 KVEEGKNGRSSIVVTEIPYQVNRQRLLEKLGELVREKKLPEISNIHDGADRHGIDIIIDL 384 Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376 + P +++ ++ + ++ F + M L G P+V+ L +L ++AH+ EV+ RR+ Sbjct: 385 KKDAIPQVVLNKLYKHTQLQVGFGVIMLSLVDG-APRVLSLKEMLHYYIAHQEEVIVRRT 443 Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVDAILN 433 + + + R IL+GL+IA NIDEII IIR+ K M RF+LT+ Q AIL Sbjct: 444 RYELAKAEERAHILEGLIIALDNIDEIIHIIRSSQTDKEAAERMTERFALTDKQTAAILE 503 Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493 +RLR L LE +I+ EL LL +L+ + I E+ EVK+ F Sbjct: 504 MRLRRLTGLEHQKIEDELKELLERIAYYKRVLSDDQLVHEIIKEELLEVKKKFGSP---- 559 Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSVDLSALHF 545 RRT E A K + +I +E + V ++ G+++ L K +S ++ Sbjct: 560 -RRTLLSE---AAKDLDVEDLIAEESMVVTMTKAGYVKRLPVATYRQQKRGGKGMSGVNL 615 Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDI 602 K+ D ++ A T +L ST GK Y L L H G AI L+ L + I Sbjct: 616 KDNDYVEHLFVASTHSYMLFFSTKGKVYRLKVYELPEASRHARGTAIVNLLPLEKGETI 674 >gi|321313674|ref|YP_004205961.1| DNA gyrase subunit A [Bacillus subtilis BSn5] gi|320019948|gb|ADV94934.1| DNA gyrase subunit A [Bacillus subtilis BSn5] Length = 821 Score = 426 bits (1096), Expect = e-117, Method: Compositional matrix adjust. Identities = 229/579 (39%), Positives = 362/579 (62%), Gaps = 23/579 (3%) Query: 6 ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65 +S NT V+ +++ + +L YA+S I RA+PD+RDG KPVHRRI++AM+++G Sbjct: 1 MSEQNT---PQVREINISQEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMNDLG 57 Query: 66 LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125 + +KKSARIVGEVIGK HPHGD +VY+S+VR+AQ F RY L+ G GNFG++DGDS Sbjct: 58 MTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDS 117 Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185 AAA RYTEARM++++ IL+ + +D +D++D Y+ + EPVV PS+FPNLL NG +GIAV Sbjct: 118 AAAMRYTEARMSKISMEILRDITKDTIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAV 177 Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245 GMAT+IP H + EI + LA+ +NP+I+I +L+E I GPDFPT G I+ R I ++Y Sbjct: 178 GMATNIPPHQLGEIIDGVLAVSENPDITIPELMEVIPGPDFPTAGQIL-GRSGIRKAYES 236 Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305 GRG +RA+ +E+ G I+VTE+PYQV K++LIEKIA+L+ K+I + D+RDES Sbjct: 237 GRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLVRDKKIEGITDLRDES 296 Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365 ++ R + ++++ +++ + ++T F +N+ L G+ P+V+ L L+ +L Sbjct: 297 DRTGMRIVIEIRRDANANVILNNLYKQTALQTSFGINLLALVDGQ-PKVLTLKQCLEHYL 355 Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFS 422 H++ V+ RR+++ ++ + R IL+GL +A ++D +I++IRN + ++ +FS Sbjct: 356 DHQKVVIRRRTAYELRKAEARAHILEGLRVALDHLDAVISLIRNSQTAEIARTGLIEQFS 415 Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482 LTE Q AIL++RL+ L LE +I+ E +L+ ++ +L + + I E+ E+ Sbjct: 416 LTEKQAQAILDMRLQRLTGLEREKIEEEYQSLVKLIAELKDILANEYKVLEIIREELTEI 475 Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLK 534 KE F+ RRT V+ + + +IE+E I V +++ G++ RS K Sbjct: 476 KERFNDE-----RRTEI--VTSGLETIEDEDLIERENIVVTLTHNGYVKRLPASTYRSQK 528 Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573 + + E D ++ + T D IL S GK Y Sbjct: 529 RGGKGVQGMGTNEDDFVEHLISTSTHDTILFFSNKGKVY 567 >gi|225630869|ref|YP_002727660.1| DNA gyrase, A subunit [Wolbachia sp. wRi] gi|225592850|gb|ACN95869.1| DNA gyrase, A subunit [Wolbachia sp. wRi] Length = 902 Score = 426 bits (1096), Expect = e-117, Method: Compositional matrix adjust. Identities = 249/651 (38%), Positives = 377/651 (57%), Gaps = 65/651 (9%) Query: 13 VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72 +++N+ +S+ LE+ YL+YA+S I RAIPD+RDGFKPVHRRI++AMS G D G + Sbjct: 1 MQDNIVPISIVKELEDSYLSYAMSVIISRAIPDVRDGFKPVHRRILYAMSRAGFDAGKPY 60 Query: 73 KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132 KK+ARIVG+V+GK HPHGD ++YDSLVR+AQ F PLI GQGNFG+IDGD A+ RYT Sbjct: 61 KKAARIVGDVMGKYHPHGDAAIYDSLVRMAQDFSLLLPLIDGQGNFGSIDGDPPASMRYT 120 Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192 EAR+ +V+ +L +DED VDFR Y+ ++EPVV P++FPNLL NG SG+AVGMAT+IP Sbjct: 121 EARLQKVSHFLLNDIDEDTVDFRPNYDGNETEPVVLPAEFPNLLVNGASGVAVGMATNIP 180 Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252 SHN+ EI +A + +DNPE+++++LLE + GPDFPTGG I+ R I ++ GRG V Sbjct: 181 SHNLGEIIDACMLYVDNPEVTLDELLEVMPGPDFPTGGTIL-GRSGIRSAFATGRGSIVV 239 Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312 + + +E++ + IV+ EIPYQV K +LIEKI EL+ KRI + +IRDES + V Sbjct: 240 QGKTHIEDLPQDRQAIVIDEIPYQVNKVKLIEKIGELVKEKRIDGITEIRDESDKSGIRV 299 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 + R+ + ++ I L+ + + F +N VL+ R P +M L I++ ++ R+EVL Sbjct: 300 VIDLRRNAEASFILNQILGLTPLRSSFSVNTLVLNNNR-PALMSLKEIIEAFIDFRKEVL 358 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---------------- 416 RR+ FR++ + I GL IA L+IDE+I IIR P Sbjct: 359 IRRTEFRLRKTREKAHIYIGLYIAVLSIDEVIKIIRGAKDPAEASRELLNKEWKTSNEIN 418 Query: 417 ----MVSR---------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDS 463 ++S + LTE Q+ AIL+++L+ L LE+ ++++EL +++ ++ + Sbjct: 419 TIIELISDSASFLKDGVYRLTELQIKAILDMKLQRLTGLEKDKLEAELSSMINLIKEYIA 478 Query: 464 LLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVV 523 L SG++ +I ++E+K F+ R+T+ E +D + +I +E + + Sbjct: 479 FLGSGEKLMKEIKNNLQEIKNRFAVP-----RKTSIEE---SDTDIEAEDLIPQEDMVIT 530 Query: 524 ISNRGWIRSLK-SH-------SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575 ++ G+I+ +K SH KE D + +T +L S G+ Y L Sbjct: 531 VTMNGYIKRVKLSHYRTQRRGGKGKLGQGLKEEDVITELFVTNTHTSVLFFSNIGRVYRL 590 Query: 576 PAGNL----LSGRG----------HGEAIQLLIDL----NHNQDIVTAFVY 608 L + RG GE I ++ L + NQ+IV Y Sbjct: 591 KVYKLPLAEPTARGRALVNIFPLAEGETITNIMPLPSENDENQNIVFTTAY 641 >gi|314934955|ref|ZP_07842314.1| DNA gyrase, A subunit [Staphylococcus caprae C87] gi|313652885|gb|EFS16648.1| DNA gyrase, A subunit [Staphylococcus caprae C87] Length = 891 Score = 426 bits (1096), Expect = e-117, Method: Compositional matrix adjust. Identities = 254/668 (38%), Positives = 396/668 (59%), Gaps = 33/668 (4%) Query: 26 LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85 + E +L YA+S I RA+PD+RDG KPVHRRI++ ++E G+ +KKSARIVG+V+GK Sbjct: 19 MRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKSARIVGDVMGK 78 Query: 86 LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145 HPHGD S+Y+++VR+AQ F RYPL+ GQGNFG++DGD AAA RYTEARMT++ +L+ Sbjct: 79 YHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEARMTKITLELLR 138 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 +++D +DF D Y+ + EP V P++FPNLL NG +GIAVGMAT+IP HN+ E+ + L+ Sbjct: 139 DINKDTIDFIDNYDGNEREPSVLPARFPNLLVNGAAGIAVGMATNIPPHNLTEVIDGVLS 198 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265 L NP+I+I +L+E I GPDFPT G+I+ + I +Y GRG ++R+R +EE G G Sbjct: 199 LSKNPDITINELMEDIQGPDFPTAGLIL-GKSGIRRAYETGRGSIQMRSRAEIEERGGGR 257 Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA--EDVRIVLFPKNRSLDPD 323 IVVTEIP+QV K+R+IEKIAEL+ K+I + D+RDE++ VRIV+ + + + Sbjct: 258 QRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRIVIDVR-KDANAS 316 Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383 +++ +++ + ++T F +NM L GR P+++ L L +L H++ V+ RR+ + ++ Sbjct: 317 VILNNLYKQTPLQTSFGVNMIALVNGR-PKLINLKEALIHYLEHQKTVVRRRTEYNLRKA 375 Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVDAILNLRLRSLR 440 R IL+GL IA +IDEII IR + K M S RF L+E Q AIL++RLR L Sbjct: 376 KDRAHILEGLRIALDHIDEIITTIRESETDKIAMESLQERFKLSERQAQAILDMRLRRLT 435 Query: 441 KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500 LE +I+SE + LL ++++ +L + + E+ E+KE F G R T Sbjct: 436 GLERDKIESEYNELLEYIKELEEILADEEVLLQLVRDELSEIKERF------GDERRTEI 489 Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLK 552 ++ D + +I +E I + +S+ +I RS + ++ E D + Sbjct: 490 QLGGLDDIE-DEDLIPEEQIVITLSHNNYIKRLPVSTYRSQNRGGRGVQGMNTLEEDFVS 548 Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAFV--- 607 + T D +L + G+ Y L + LS + G + I+L +++ I T Sbjct: 549 QLVTLSTHDNVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIELENDETISTMIAVKD 608 Query: 608 YDSTCKLLVVSSKGNAFIVEESEIIANTR---KGKTFLKVSSEEKMKLVVKVTGDHVAVV 664 +S LV ++K IV+ S + +R GK + ++++ V TG+ ++ Sbjct: 609 LESEEHYLVFATKRG--IVKRSALSNFSRINKNGKIAIGFKEDDELIAVRLTTGNEDILI 666 Query: 665 GENRKLLI 672 G + LI Sbjct: 667 GTSHASLI 674 >gi|16077075|ref|NP_387888.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis str. 168] gi|221307816|ref|ZP_03589663.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis str. 168] gi|221312138|ref|ZP_03593943.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221317071|ref|ZP_03598365.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis str. JH642] gi|221321334|ref|ZP_03602628.1| DNA gyrase subunit A [Bacillus subtilis subsp. subtilis str. SMY] gi|121881|sp|P05653|GYRA_BACSU RecName: Full=DNA gyrase subunit A gi|40019|emb|CAA26222.1| unnamed protein product [Bacillus subtilis] gi|467397|dbj|BAA05243.1| A subunit of DNA gyrase [Bacillus subtilis] gi|2632274|emb|CAB11783.1| DNA gyrase (subunit A) [Bacillus subtilis subsp. subtilis str. 168] gi|291482377|dbj|BAI83452.1| DNA gyrase subunit A [Bacillus subtilis subsp. natto BEST195] Length = 821 Score = 426 bits (1096), Expect = e-117, Method: Compositional matrix adjust. Identities = 229/579 (39%), Positives = 362/579 (62%), Gaps = 23/579 (3%) Query: 6 ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65 +S NT V+ +++ + +L YA+S I RA+PD+RDG KPVHRRI++AM+++G Sbjct: 1 MSEQNT---PQVREINISQEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMNDLG 57 Query: 66 LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125 + +KKSARIVGEVIGK HPHGD +VY+S+VR+AQ F RY L+ G GNFG++DGDS Sbjct: 58 MTSDKPYKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDS 117 Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185 AAA RYTEARM++++ IL+ + +D +D++D Y+ + EPVV PS+FPNLL NG +GIAV Sbjct: 118 AAAMRYTEARMSKISMEILRDITKDTIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAV 177 Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245 GMAT+IP H + EI + LA+ +NP+I+I +L+E I GPDFPT G I+ R I ++Y Sbjct: 178 GMATNIPPHQLGEIIDGVLAVSENPDITIPELMEVIPGPDFPTAGQIL-GRSGIRKAYES 236 Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305 GRG +RA+ +E+ G I+VTE+PYQV K++LIEKIA+L+ K+I + D+RDES Sbjct: 237 GRGSITIRAKAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLVRDKKIEGITDLRDES 296 Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365 ++ R + ++++ +++ + ++T F +N+ L G+ P+V+ L L+ +L Sbjct: 297 DRTGMRIVIEIRRDANANVILNNLYKQTALQTSFGINLLALVDGQ-PKVLTLKQCLEHYL 355 Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFS 422 H++ V+ RR+++ ++ + R IL+GL +A ++D +I++IRN + ++ +FS Sbjct: 356 DHQKVVIRRRTAYELRKAEARAHILEGLRVALDHLDAVISLIRNSQTAEIARTGLIEQFS 415 Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482 LTE Q AIL++RL+ L LE +I+ E +L+ ++ +L + + I E+ E+ Sbjct: 416 LTEKQAQAILDMRLQRLTGLEREKIEEEYQSLVKLIAELKDILANEYKVLEIIREELTEI 475 Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLK 534 KE F+ RRT V+ + + +IE+E I V +++ G++ RS K Sbjct: 476 KERFNDE-----RRTEI--VTSGLETIEDEDLIERENIVVTLTHNGYVKRLPASTYRSQK 528 Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573 + + E D ++ + T D IL S GK Y Sbjct: 529 RGGKGVQGMGTNEDDFVEHLISTSTHDTILFFSNKGKVY 567 >gi|223040331|ref|ZP_03610607.1| DNA gyrase, A subunit [Campylobacter rectus RM3267] gi|222878400|gb|EEF13505.1| DNA gyrase, A subunit [Campylobacter rectus RM3267] Length = 874 Score = 426 bits (1096), Expect = e-117, Method: Compositional matrix adjust. Identities = 244/616 (39%), Positives = 384/616 (62%), Gaps = 36/616 (5%) Query: 4 DNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63 +N+ N N ++++ V + +++ YL Y++S I RA+PD RDG KPVHRRI++AM+ Sbjct: 3 ENLLNQN----QDIQTVDIEESIKTSYLDYSMSVIVGRALPDARDGLKPVHRRILYAMNN 58 Query: 64 MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123 +G+ + + KSARIVG+VIGK HPHGD +VYD+LVR+AQ F RYP + GQGNFG+IDG Sbjct: 59 LGVGSRSPYMKSARIVGDVIGKYHPHGDTAVYDALVRMAQKFSMRYPAVDGQGNFGSIDG 118 Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183 D AAA RYTEARMT + E IL+ +++D VDF Y++ ++EP V PS+ PNLL NG+SGI Sbjct: 119 DGAAAMRYTEARMTNLTEEILRDIEKDTVDFIPNYDDRETEPDVLPSRVPNLLLNGSSGI 178 Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243 AVGMAT+IP H++ E+ + L +++N ++E+++EYI GPDFPTGGII ++ I+E+Y Sbjct: 179 AVGMATNIPPHSLDELIDGLLLVLENKNATLEEVMEYIKGPDFPTGGIIF-GKKGIIEAY 237 Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303 R GRG ++RA+ +E+ IVV E+PYQ K+RLIE+IAEL+ K+I + ++RD Sbjct: 238 RTGRGRVKLRAKTHIEK-KPNKDVIVVDELPYQTNKARLIEQIAELVKEKQIEGISEVRD 296 Query: 304 ESAED-VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362 ES +D +R+V+ K ++ D+++ ++F + ME+ F + M ++ + P+V L +LK Sbjct: 297 ESDKDGIRVVIELKRDAM-SDIVLNNLFKSTTMESTFGVIMLAIN-NKEPKVFNLIELLK 354 Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE-DKP--KPVMVS 419 +L HR+ V+ RR+ F ++ R IL+GL IA NIDE+I +I+N D P + +V+ Sbjct: 355 LFLNHRKTVIIRRTIFDLEKARARAHILEGLKIALDNIDEVIELIKNSADTPSAREGLVA 414 Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479 +F L+E Q +AIL++RL L LE ++++EL L+AE ++D +L S I E+ Sbjct: 415 KFGLSELQANAILDMRLSKLTGLEREKLEAELAELMAEIARLDEILKSETLLEKLIKDEL 474 Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539 E+K F + E+ + +I E + V I++RG+I+ + S + Sbjct: 475 LEIKNKF--------KVPRITEIVDDYDDIDIEDLIPNENMVVTITHRGYIKRVPSKQYE 526 Query: 540 LS--------ALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGH 586 A+ + D ++ ++T D ++ ++ G K Y +P G S Sbjct: 527 KQKRGGKGKVAVTTYDDDFIESFFTSNTHDTLMFVTDRGQLYWLKVYKIPEG---SRTAK 583 Query: 587 GEAIQLLIDLNHNQDI 602 G+A+ LI L ++ I Sbjct: 584 GKAVVNLIQLQPDEKI 599 >gi|217032711|ref|ZP_03438196.1| hypothetical protein HPB128_201g14 [Helicobacter pylori B128] gi|298736397|ref|YP_003728923.1| DNA gyrase, subunit A [Helicobacter pylori B8] gi|216945585|gb|EEC24238.1| hypothetical protein HPB128_201g14 [Helicobacter pylori B128] gi|298355587|emb|CBI66459.1| DNA gyrase, subunit A [Helicobacter pylori B8] Length = 826 Score = 426 bits (1096), Expect = e-117, Method: Compositional matrix adjust. Identities = 249/625 (39%), Positives = 385/625 (61%), Gaps = 46/625 (7%) Query: 4 DNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63 DN+ N +N+ V + ++EE YLAY++S I RA+PD RDG KPVHRRI++AM E Sbjct: 3 DNLINET----KNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHE 58 Query: 64 MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123 +GL A+KKSARIVG+VIGK HPHGD +VYD+LVR+AQ F R L+ GQGNFG+IDG Sbjct: 59 LGLTSKVAYKKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSIDG 118 Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183 D+AAA RYTEARMT+ +E IL+ +D+D +DF Y++ EP + PS+ PNLL NG +GI Sbjct: 119 DNAAAMRYTEARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGI 178 Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243 AVGMATSIP H + EI +A + +++NP +++++LE++ GPDFPTGGII + I+E+Y Sbjct: 179 AVGMATSIPPHRMDEIIDALMHVLENPNAALDEILEFVKGPDFPTGGIIY-GKAGIIEAY 237 Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303 + GRG +VRA+ VE+ + IV+ E+P+Q K++L+E+I++L K+I + ++RD Sbjct: 238 KTGRGRVKVRAKVHVEKT-KNKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRD 296 Query: 304 ES-AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362 ES E +R+V+ K ++ ++++ ++ L+ MET F + + + + P++ L +L+ Sbjct: 297 ESDREGIRVVIELKRDAI-SEIVLNHLYKLTTMETTFSIILLAI-YNKEPKIFTLLELLR 354 Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVS 419 +L HR+ ++ RR+ F ++ R IL+G LIA NIDEI+ +I+ P K ++ Sbjct: 355 LFLNHRKTIIIRRTIFELEKAKARAHILEGYLIALDNIDEIVQLIKTSPSPEAAKNALME 414 Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479 RFSL+E Q AIL +RL+ L LE +IK E NLL + ++ +L S + + E+ Sbjct: 415 RFSLSEIQSKAILEMRLQRLTGLERDKIKEEYQNLLELIDDLNGILKSEDRLNGVVKTEL 474 Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539 EVKE FS RRT E+ + ++ + +I EP+ V +S +G+++ VD Sbjct: 475 LEVKEQFSSP-----RRT---EIQESYESIDIEDLIANEPMVVSMSYKGYVK-----RVD 521 Query: 540 LSALHFK-------------EGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLL 581 L A + E D ++ A+T D +L ++ G K Y +P + + Sbjct: 522 LKAYEKQNRGGKGKLSGSTYEDDFIENFFVANTHDILLFITNKGQLYHLKVYKIPEASRI 581 Query: 582 SGRGHGEAIQLLIDLNHNQDIVTAF 606 + G+AI LI L ++ I+ Sbjct: 582 A---MGKAIVNLISLAPDEKIMATL 603 >gi|223043397|ref|ZP_03613443.1| DNA gyrase, A subunit [Staphylococcus capitis SK14] gi|222443186|gb|EEE49285.1| DNA gyrase, A subunit [Staphylococcus capitis SK14] Length = 890 Score = 426 bits (1096), Expect = e-117, Method: Compositional matrix adjust. Identities = 254/668 (38%), Positives = 396/668 (59%), Gaps = 33/668 (4%) Query: 26 LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85 + E +L YA+S I RA+PD+RDG KPVHRRI++ ++E G+ +KKSARIVG+V+GK Sbjct: 18 MRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKSARIVGDVMGK 77 Query: 86 LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145 HPHGD S+Y+++VR+AQ F RYPL+ GQGNFG++DGD AAA RYTEARMT++ +L+ Sbjct: 78 YHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEARMTKITLELLR 137 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 +++D +DF D Y+ + EP V P++FPNLL NG +GIAVGMAT+IP HN+ E+ + L+ Sbjct: 138 DINKDTIDFIDNYDGNEREPSVLPARFPNLLVNGAAGIAVGMATNIPPHNLTEVIDGVLS 197 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265 L NP+I+I +L+E I GPDFPT G+I+ + I +Y GRG ++R+R +EE G G Sbjct: 198 LSKNPDITINELMEDIQGPDFPTAGLIL-GKSGIRRAYETGRGSIQMRSRAEIEERGGGR 256 Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA--EDVRIVLFPKNRSLDPD 323 IVVTEIP+QV K+R+IEKIAEL+ K+I + D+RDE++ VRIV+ + + + Sbjct: 257 QRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRIVIDVR-KDANAS 315 Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383 +++ +++ + ++T F +NM L GR P+++ L L +L H++ V+ RR+ + ++ Sbjct: 316 VILNNLYKQTPLQTSFGVNMIALVNGR-PKLINLKEALIHYLEHQKTVVRRRTEYNLRKA 374 Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVDAILNLRLRSLR 440 R IL+GL IA +IDEII IR + K M S RF L+E Q AIL++RLR L Sbjct: 375 KDRAHILEGLRIALDHIDEIITTIRESETDKIAMESLQERFKLSERQAQAILDMRLRRLT 434 Query: 441 KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500 LE +I+SE + LL ++++ +L + + E+ E+KE F G R T Sbjct: 435 GLERDKIESEYNELLEYIKELEEILADEEVLLQLVRDELSEIKERF------GDERRTEI 488 Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLK 552 ++ D + +I +E I + +S+ +I RS + ++ E D + Sbjct: 489 QLGGLDDIE-DEDLIPEEQIVITLSHNNYIKRLPVSTYRSQNRGGRGVQGMNTLEEDFVS 547 Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAFV--- 607 + T D +L + G+ Y L + LS + G + I+L +++ I T Sbjct: 548 QLVTLSTHDNVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIELENDETISTMIAVKD 607 Query: 608 YDSTCKLLVVSSKGNAFIVEESEIIANTR---KGKTFLKVSSEEKMKLVVKVTGDHVAVV 664 +S LV ++K IV+ S + +R GK + ++++ V TG+ ++ Sbjct: 608 LESEEHYLVFATKRG--IVKRSALSNFSRINKNGKIAIGFKEDDELIAVRLTTGNEDILI 665 Query: 665 GENRKLLI 672 G + LI Sbjct: 666 GTSHASLI 673 >gi|224418336|ref|ZP_03656342.1| DNA gyrase subunit A [Helicobacter canadensis MIT 98-5491] gi|253827657|ref|ZP_04870542.1| DNA gyrase subunit A [Helicobacter canadensis MIT 98-5491] gi|313141867|ref|ZP_07804060.1| DNA gyrase A subunit [Helicobacter canadensis MIT 98-5491] gi|253511063|gb|EES89722.1| DNA gyrase subunit A [Helicobacter canadensis MIT 98-5491] gi|313130898|gb|EFR48515.1| DNA gyrase A subunit [Helicobacter canadensis MIT 98-5491] Length = 831 Score = 426 bits (1096), Expect = e-117, Method: Compositional matrix adjust. Identities = 246/614 (40%), Positives = 380/614 (61%), Gaps = 36/614 (5%) Query: 12 LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71 L+ ++++ V++ +++E YL Y++S I RA+PD RDG KPVHRRI++AM E+G+ A Sbjct: 4 LLNQDIQNVNIEDSIKESYLDYSMSVIVGRALPDARDGLKPVHRRILYAMYELGVTSKAK 63 Query: 72 FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131 +KKSARIVG+VIGK HPHGD +VYD+LVR+AQ F R L+ GQGNFG+IDGDSAAA RY Sbjct: 64 YKKSARIVGDVIGKYHPHGDIAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDSAAAMRY 123 Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191 TEA+MTQ AE +L+ +D+D VDF Y++ EP + PS+ PNLL NG++GIAVGMAT+I Sbjct: 124 TEAKMTQAAEEVLRDIDKDTVDFLPNYDDTLKEPDILPSRLPNLLINGSNGIAVGMATNI 183 Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251 P H + EI +A + LID+P+ + ++L++I GPDFPTGGII + I E+Y GRG + Sbjct: 184 PPHRIDEIIDALVYLIDHPKAELNEILQFIEGPDFPTGGIIY-GKNGIKEAYETGRGRIK 242 Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VR 310 +RA+ +E+ + IV+ EIPYQV K+RL+E+IAEL K I + ++RDES D +R Sbjct: 243 IRAKTHIEKT-KTKDIIVIDEIPYQVNKARLVEQIAELAKEKVIEGIAEVRDESDRDGIR 301 Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370 +V+ K ++ ++++ +F + ME+ F + + + + P++ L +L +++HR+ Sbjct: 302 VVVELKREAM-SEIVLNHLFKSTPMESTFGIILLAI-YNKEPKIFTLLELLALFISHRKS 359 Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQ 427 V+ RR+ F ++ R IL+GL IA NIDEI+A+IR+ PK ++ +F+L+E Q Sbjct: 360 VVIRRTIFELEKAKARAHILEGLRIALENIDEIVALIRSSSDPKVAKEGLIEKFNLSEIQ 419 Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487 AIL++RL+ L LE +I++E L+ E E + S+L S + I E+ EVKE FS Sbjct: 420 AQAILDMRLQRLTGLERDKIENEYQELIKEIEYLSSILRSEELLNKIIKEELLEVKEKFS 479 Query: 488 KSTDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546 +R T E D ++ + +I E + V +S+RG+++ + + + Sbjct: 480 T------KRLTAIE---EDYESIDVEDLIPNEAVVVTMSHRGYVKRVPVRTYEKQ----N 526 Query: 547 EGDSLKIALHAH------------TTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQL 592 G KI+ + H T D I+ ++ G+ Y L + S G+A+ Sbjct: 527 RGGKGKISANTHDDDFIESFFVSDTHDTIMFITNKGQLYWLKVYKIPEASRTAIGKAVVN 586 Query: 593 LIDLNHNQDIVTAF 606 LI L ++ I+ Sbjct: 587 LISLAPDEKIMATI 600 >gi|297379899|gb|ADI34786.1| DNA gyrase, A subunit [Helicobacter pylori v225d] Length = 828 Score = 426 bits (1095), Expect = e-117, Method: Compositional matrix adjust. Identities = 249/625 (39%), Positives = 384/625 (61%), Gaps = 46/625 (7%) Query: 4 DNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63 DN+ N +N+ V + ++EE YLAY++S I RA+PD RDG KPVHRRI++AM E Sbjct: 3 DNLINET----KNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHE 58 Query: 64 MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123 +GL A+KKSARIVG+VIGK HPHGD +VYD+LVR+AQ F R L+ GQGNFG+IDG Sbjct: 59 LGLTSKVAYKKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSIDG 118 Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183 D+AAA RYTEARMT+ +E IL+ +D+D +DF Y++ EP + PS+ PNLL NG +GI Sbjct: 119 DNAAAMRYTEARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGI 178 Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243 AVGMATSIP H + EI +A + +++NP ++++LE++ GPDFPTGGII + I+E+Y Sbjct: 179 AVGMATSIPPHRIDEIIDALVHVLENPNAGLDEILEFVKGPDFPTGGIIY-GKAGIIEAY 237 Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303 + GRG +VRA+ VE+ + IV+ E+P+Q K++L+E+I++L K+I + ++RD Sbjct: 238 KTGRGRVKVRAKVHVEKT-KNKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRD 296 Query: 304 ES-AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362 ES E +R+V+ K ++ ++++ ++ L+ MET F + + + + P++ L +L+ Sbjct: 297 ESDREGIRVVIELKRDAM-SEIVLNHLYKLTTMETTFSIILLAI-YNKEPKIFTLLELLR 354 Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVS 419 +L HR+ ++ RR+ F ++ R IL+G LIA NIDEI+ +I+ P K ++ Sbjct: 355 LFLNHRKTIIIRRTIFELEKAKARAHILEGYLIALDNIDEIVRLIKTSQSPEAAKNALME 414 Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479 RF+L+E Q AIL +RL+ L LE +IK E NLL ++ +L S + + E+ Sbjct: 415 RFTLSEIQSKAILEMRLQRLTGLERDKIKEEYQNLLELIIDLNGILKSEDRLNEVVKTEL 474 Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539 EVKE FS +RRT E+ A + + +I EP+ V +S +G+++ VD Sbjct: 475 LEVKEQFS-----SQRRT---EIQEAYENIDIEDLIANEPMVVSMSYKGYVK-----RVD 521 Query: 540 LSALHFK-------------EGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLL 581 L A + E D ++ A+T D +L ++ G K Y +P + + Sbjct: 522 LKAYERQNRGGKGKLSGNTYEDDFIENFFVANTHDILLFITNKGQLYHLKVYKIPEASRI 581 Query: 582 SGRGHGEAIQLLIDLNHNQDIVTAF 606 + G+AI LI L+ ++ I+ Sbjct: 582 A---MGKAIVNLISLDPDEKIMATL 603 >gi|254507989|ref|ZP_05120117.1| DNA gyrase, A subunit [Vibrio parahaemolyticus 16] gi|219549097|gb|EED26094.1| DNA gyrase, A subunit [Vibrio parahaemolyticus 16] Length = 877 Score = 426 bits (1095), Expect = e-117, Method: Compositional matrix adjust. Identities = 271/725 (37%), Positives = 412/725 (56%), Gaps = 64/725 (8%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + V++ L YL YA+S I RA+PD+RDG KPVHRR++ AM+ +G D+ +KKSA Sbjct: 8 ITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSA 67 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG+IDGDSAAA RYTE RM Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVRM 127 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 ++A +L +D++ VD+ Y+ + P V P+K PNLL NG SGIAVGMAT+IP HN+ Sbjct: 128 AKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGASGIAVGMATNIPPHNL 187 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ + LA I+N EI+I++L++YI GPDFPT +I R+ IV++Y+ GRG +R++ Sbjct: 188 GEVIDGCLAYINNEEITIDELMDYIPGPDFPTAALI-SGRKGIVDAYKTGRGKIYMRSKA 246 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFP 315 +E G I+VTEIPYQV K+RLIEKIAEL+ K++ + +RDES +D +RIV+ Sbjct: 247 EIEADKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIEC 306 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 K ++ ++++ +++ + ++T F +NM L+ G+ PQ+ L +LK ++ HRREV+ RR Sbjct: 307 KRDAVG-EVVLNNLYANTQLQTTFGINMVALNNGQ-PQLFNLKEMLKCFVDHRREVVTRR 364 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR------------ 420 + F ++ R IL+GL +A NIDEII +IR P K +V+R Sbjct: 365 TIFELRKARERAHILEGLALALANIDEIIELIRKAPTPAEAKAGLVARGWDLGNVAAMLE 424 Query: 421 ----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458 + LTE Q AIL+LRL L LE +I E LL E Sbjct: 425 RAGTDAARPEWLEAQYGIRDGQYFLTETQAQAILDLRLHKLTGLEHEKILDEYKALLEEI 484 Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518 ++ +L S ++ I E+ V++ F RRT E++ A + +I +E Sbjct: 485 AELMHILASTERLMEVIREELETVRDAFGDV-----RRT---EITAASHDIDMEELIARE 536 Query: 519 PITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570 + V +S+ G+++ + + SA K+ D ++ L A+T D IL ST G Sbjct: 537 DVVVTLSHEGYVKYQILSDYEAQRRGGKGKSATKMKDEDYIERLLVANTHDNILCFSTRG 596 Query: 571 KAYTLPAGNL-LSGR-GHGEAIQLLIDLNHNQDIVTAFVYDS-TCKLLVVSSKGNAFIVE 627 K Y L L L+ R G+ I ++ L + I D + + + + G+ + + Sbjct: 597 KTYRLKVYQLPLASRTARGKPIINILPLEEGERITAILPVDEFSPEKFIFMATGDGTVKK 656 Query: 628 ES-EIIANTR-KGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR- 683 S + AN R G + + ++ + V GD + + + K++ F+ D++ M R Sbjct: 657 TSLDQFANVRSNGLIAVNLRDDDSLIGVDITNGDSDIMLFSKAGKVVRFNEDKVRAMGRT 716 Query: 684 GKGVR 688 GVR Sbjct: 717 AAGVR 721 >gi|218291099|ref|ZP_03495122.1| DNA gyrase, A subunit [Alicyclobacillus acidocaldarius LAA1] gi|218238984|gb|EED06191.1| DNA gyrase, A subunit [Alicyclobacillus acidocaldarius LAA1] Length = 820 Score = 426 bits (1095), Expect = e-117, Method: Compositional matrix adjust. Identities = 237/574 (41%), Positives = 357/574 (62%), Gaps = 31/574 (5%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 V + L +L YA+S I RAIPD+RDG KPVHRRI++AM E G+ +KKS+RIV Sbjct: 13 VDISQELRNSFLDYAMSVIVARAIPDVRDGLKPVHRRILYAMYEAGMTPDKPYKKSSRIV 72 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+V+GK HPHGD +VY++LVRLAQ F RYPLI G GNFG+IDGD+AAA RYTE+RM+ + Sbjct: 73 GDVLGKFHPHGDAAVYEALVRLAQDFSTRYPLIDGHGNFGSIDGDAAAAMRYTESRMSAI 132 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A +L+ ++++ VDF Y+E++ EPVV PS+FPNLL NG+SGIAVGMAT+IP HN++E+ Sbjct: 133 ALELLRDINKETVDFIPNYDEQEEEPVVLPSRFPNLLVNGSSGIAVGMATNIPPHNLREV 192 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 + + LIDNP+ +++ L+ I GPDFPTGG+I+ RE I ++Y GRG VRA E Sbjct: 193 IDGVVMLIDNPDATLDDLMTVIKGPDFPTGGVIL-GREGIRKAYETGRGSITVRAVTHFE 251 Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319 E+ G IVVTEIPYQ K+R++EKIAEL K+I + D+RDES V+ R Sbjct: 252 ELSGGKTRIVVTEIPYQQNKARIVEKIAELAREKKIDGITDLRDESDRRGMRVVIELRRD 311 Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379 + P +++ ++F + ++T F + +N+ + P+V+ L L+ +L H+R+V+ RR+ + Sbjct: 312 VRPQVVLNNLFKHTALQTSFGV-INLALVNGEPKVLTLRETLEHYLNHQRDVVRRRTQYD 370 Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAILNLRL 436 + + R IL+GL IA ++DE+I++IR+ D+ + ++S F L+E Q AIL++RL Sbjct: 371 LAKAEARAHILEGLRIALDHLDEVISLIRSSRTVDEARQGLISTFGLSEEQAQAILDMRL 430 Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496 + L LE +I++E L+ ++ ++L K + I EI E+KE F RR Sbjct: 431 QRLTGLEREKIEAEYQELIQRIAELKAILADPKLLDSVIRQEILEIKERFGDD-----RR 485 Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF-KEGDSLKIAL 555 T + A+ ++ +I + + I++RG+I+ L LS H + G + Sbjct: 486 T---RIVNAEGEISEEDLIPVHDVVIAITHRGYIKRLP-----LSTYHSQRRGGRGMTLI 537 Query: 556 HAH------------TTDRILLLSTDGKAYTLPA 577 +AH T D +L + G+ Y + A Sbjct: 538 NAHEEDFVTGLHVTSTHDYLLFFTNRGRMYAIKA 571 >gi|151220217|ref|YP_001331040.1| DNA gyrase A subunit [Staphylococcus aureus subsp. aureus str. Newman] gi|150373017|dbj|BAF66277.1| DNA gyrase A subunit [Staphylococcus aureus subsp. aureus str. Newman] Length = 893 Score = 426 bits (1095), Expect = e-117, Method: Compositional matrix adjust. Identities = 242/614 (39%), Positives = 376/614 (61%), Gaps = 30/614 (4%) Query: 26 LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85 + E +L YA+S I RA+PD+RDG KPVHRRI++ ++E G+ ++KKSARIVG+V+GK Sbjct: 24 MRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDKSYKKSARIVGDVMGK 83 Query: 86 LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145 HPHGD S+Y+++VR+AQ F RYPL+ GQGNFG++DGD AAA RYTEARMT++ +L+ Sbjct: 84 YHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEARMTKITLELLR 143 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 +++D +DF D Y+ + EP V P++FPNLLANG SGIAVGMAT+IP HN+ E+ L+ Sbjct: 144 DINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATNIPPHNLTELINGVLS 203 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265 L NP+ISI +L+E I GPDFPT G+I+ + I +Y GRG ++R+R +EE G G Sbjct: 204 LSKNPDISIAELMEDIEGPDFPTAGLIL-GKSGIRRAYETGRGSIQMRSRAVIEERGGGR 262 Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA--EDVRIVLFPKNRSLDPD 323 IVVTEIP+QV K+R+IEKIAEL+ K+I + D+RDE++ VR+V+ + + + Sbjct: 263 QRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRVVIDVR-KDANAS 321 Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383 +++ +++ + ++T F +NM L GR P+++ L L +L H++ V+ RR+ + ++ Sbjct: 322 VILNNLYKQTPLQTSFGVNMIALVNGR-PKLINLKEALVHYLEHQKTVVRRRTQYNLRKA 380 Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVDAILNLRLRSLR 440 R IL+GL IA +IDEII+ IR D K M S RF L+E Q AIL++RLR L Sbjct: 381 KDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQRFKLSEKQAQAILDMRLRRLT 440 Query: 441 KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500 LE +I++E + LL +++++L + + E+ E+++ F RRT Sbjct: 441 GLERDKIEAEYNELLNYISELEAILADEEVLLQLVRDELTEIRDRFGDD-----RRT--- 492 Query: 501 EVSRADKATLQ-QAMIEKEPITVVISNRGWIRSLKSHSV--------DLSALHFKEGDSL 551 E+ L+ + +I +E I + +S+ +I+ L + + ++ E D + Sbjct: 493 EIQLGGFENLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRAQNRGGRGVQGMNTLEEDFV 552 Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAFV-- 607 + T D +L + G+ Y L + LS + G + I+L +++ I T Sbjct: 553 SQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIELENDEVISTMIAVK 612 Query: 608 -YDSTCKLLVVSSK 620 +S LV ++K Sbjct: 613 DLESEDNFLVFATK 626 >gi|84501054|ref|ZP_00999289.1| DNA gyrase subunit A [Oceanicola batsensis HTCC2597] gi|84391121|gb|EAQ03539.1| DNA gyrase subunit A [Oceanicola batsensis HTCC2597] Length = 889 Score = 426 bits (1095), Expect = e-117, Method: Compositional matrix adjust. Identities = 264/709 (37%), Positives = 395/709 (55%), Gaps = 61/709 (8%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 +S+ + YL YA+S I RAIPDLRDG KPVHRRI+ AM E+G ++KSAR V Sbjct: 1 MSITDEMRNSYLDYAMSVIVARAIPDLRDGLKPVHRRILFAMHEVGNTHDKPYRKSARPV 60 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+V+GK HPHGD ++YD+L R+AQ F PL+ GQGNFG++DGD AA RYTE RM + Sbjct: 61 GDVMGKYHPHGDSAIYDALARMAQDFSMSLPLLDGQGNFGSMDGDKPAAMRYTEVRMDKP 120 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A+ +L +D+D VDF+D Y+ +D EP V P +FPN+L NG GIAVGMAT+IP HN+ E+ Sbjct: 121 AQYMLADIDKDTVDFQDNYDGKDREPSVLPVRFPNMLVNGAGGIAVGMATNIPPHNLGEV 180 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 +A LALIDNP++S+E+L++Y+ GPDFPTGG+++ R ++Y GRG +RA+ VE Sbjct: 181 VDATLALIDNPDLSVEELIDYVPGPDFPTGGVLL-GRSGARKAYTEGRGSCIIRAKTHVE 239 Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFPKNR 318 E+ R + IV+ EIPYQV KS +IEKIAE + K+I + ++DES VR+V+ K R Sbjct: 240 ELRRDRYAIVIDEIPYQVNKSAMIEKIAEQVREKKIEGISHVQDESDRHGVRVVVELK-R 298 Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378 PD+++ +F + M+T F NM L+ GR P+ + L G L +++ R EV+ RR+++ Sbjct: 299 DATPDVVLNQLFRFTPMQTYFGCNMLALNGGR-PETLTLYGFLSNFISFREEVVARRTAY 357 Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---------------------------D 411 ++ R IL GL +A N+DE++A IR D Sbjct: 358 LLRKARERSHILCGLAVAVSNVDEVVATIRASADAAEARQKLMARRWPAEEIAPYIRLID 417 Query: 412 KPKPVMV--SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGK 469 P M ++L+E Q AIL LRL+ L +L ++ EL+ L + ++ +L S + Sbjct: 418 DPTHRMNDDGTYNLSETQARAILELRLQRLTQLGVKEVTDELEELAGKIKEYLEILGSRE 477 Query: 470 QQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW 529 + I+ E+REVKE+F+ RRT + S + +IE+ + V I+ G+ Sbjct: 478 RIMQIISDELREVKELFAVP-----RRTEIVDWS---GDMEDEDLIERAEMVVTITQSGY 529 Query: 530 I--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL- 580 I R+ K LS + K+ D + A+T ++L +TDG Y L L Sbjct: 530 IKRTPLEDYRAQKRGGKGLSGMATKDDDVVTSLFVANTHTQLLFFTTDGMVYKLKTWRLP 589 Query: 581 LSGR-GHGEAIQLLIDLNHNQDIVTAFVYD------STCKLLVVSSKGNAFIVEESEIIA 633 L GR G+AI ++ + I D +++ +S G S+ Sbjct: 590 LGGRTSKGKAIVNILPIPTGVSIAAIMPVDRDEKDWGDLQIVFATSAGTVRRNALSDFTN 649 Query: 634 NTRKGKTFLKVSSE-EKMKLV-VKVTG--DHVAVVGENRKLLIFSIDQI 678 GK +K E E M+L+ ++ G D V + ++ + + F D + Sbjct: 650 VKSNGKIAMKFEGENEGMRLINARICGAEDDVMLFTQSGRAIRFRADDV 698 >gi|108563111|ref|YP_627427.1| DNA gyrase subunit A [Helicobacter pylori HPAG1] gi|107836884|gb|ABF84753.1| DNA gyrase subunit A [Helicobacter pylori HPAG1] Length = 827 Score = 426 bits (1095), Expect = e-117, Method: Compositional matrix adjust. Identities = 248/614 (40%), Positives = 379/614 (61%), Gaps = 42/614 (6%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 +N+ V + ++EE YLAY++S I RA+PD RDG KPVHRRI++AM E+GL A+KK Sbjct: 10 KNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHELGLTSKVAYKK 69 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 SARIVG+VIGK HPHGD +VYD+LVR+AQ F R L+ GQGNFG+IDGD+AAA RYTEA Sbjct: 70 SARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDNAAAMRYTEA 129 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 RMT+ +E IL+ +D+D +DF Y++ EP + PS+ PNLL NG +GIAVGMATSIP H Sbjct: 130 RMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGIAVGMATSIPPH 189 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 + EI +A +++NP ++++LE++ GPDFPTGGII + I+ESY+ GRG +VRA Sbjct: 190 RIDEIIDALAHVLENPNAELDEILEFVKGPDFPTGGIIY-GKAGIIESYKTGRGRVKVRA 248 Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVL 313 + VE+ + IV+ E+P+Q K++L+E+I++L K+I + ++RDES E +R+V+ Sbjct: 249 KVHVEKT-KNKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRDESDREGIRVVI 307 Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373 K ++ ++++ ++ L+ MET F + + + + P++ L +L+ +L HR+ ++ Sbjct: 308 ELKRDAM-SEIVLNHLYKLTTMETTFSIILLAI-YNKEPKIFTLLELLRLFLNHRKTIII 365 Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVDA 430 RR+ F ++ R IL+G LIA NIDEI+ +I+ P K ++ RFSL+E Q A Sbjct: 366 RRTIFELEKAKARAHILEGYLIALDNIDEIVQLIKTSPSPEAAKNALMERFSLSEIQSKA 425 Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490 IL +RL+ L LE +IK E NLL + ++ +L S ++ + E+ EVKE FS Sbjct: 426 ILEMRLQRLTGLERDKIKEEYQNLLELIDDLNGILKSEERLNEVVKTELLEVKEQFSSP- 484 Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK---- 546 RRT E+ + + + +I EP+ V IS +G+++ VDL A + Sbjct: 485 ----RRT---EIQESYENIDIEDLIANEPMVVSISYKGYVK-----RVDLKAYEKQNRGG 532 Query: 547 ---------EGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQL 592 E D ++ A+T D +L ++ G K Y +P + ++ G+AI Sbjct: 533 KGKLSGSTYEDDFIENFFVANTHDILLFITNKGQLYHLKVYKIPEASRIA---MGKAIVN 589 Query: 593 LIDLNHNQDIVTAF 606 LI L ++ I+ Sbjct: 590 LISLAPDEKIMATL 603 >gi|57651114|ref|YP_184917.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus COL] gi|161508272|ref|YP_001573931.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|258451361|ref|ZP_05699392.1| DNA gyrase, A subunit [Staphylococcus aureus A5948] gi|81695633|sp|Q5HJZ0|GYRA_STAAC RecName: Full=DNA gyrase subunit A gi|57285300|gb|AAW37394.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus COL] gi|160367081|gb|ABX28052.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|257860891|gb|EEV83708.1| DNA gyrase, A subunit [Staphylococcus aureus A5948] gi|315197924|gb|EFU28257.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Staphylococcus aureus subsp. aureus CGS01] gi|320141423|gb|EFW33266.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus MRSA131] gi|320144406|gb|EFW36171.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus MRSA177] Length = 887 Score = 426 bits (1095), Expect = e-117, Method: Compositional matrix adjust. Identities = 242/614 (39%), Positives = 376/614 (61%), Gaps = 30/614 (4%) Query: 26 LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85 + E +L YA+S I RA+PD+RDG KPVHRRI++ ++E G+ ++KKSARIVG+V+GK Sbjct: 18 MRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDKSYKKSARIVGDVMGK 77 Query: 86 LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145 HPHGD S+Y+++VR+AQ F RYPL+ GQGNFG++DGD AAA RYTEARMT++ +L+ Sbjct: 78 YHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEARMTKITLELLR 137 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 +++D +DF D Y+ + EP V P++FPNLLANG SGIAVGMAT+IP HN+ E+ L+ Sbjct: 138 DINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATNIPPHNLTELINGVLS 197 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265 L NP+ISI +L+E I GPDFPT G+I+ + I +Y GRG ++R+R +EE G G Sbjct: 198 LSKNPDISIAELMEDIEGPDFPTAGLIL-GKSGIRRAYETGRGSIQMRSRAVIEERGGGR 256 Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA--EDVRIVLFPKNRSLDPD 323 IVVTEIP+QV K+R+IEKIAEL+ K+I + D+RDE++ VR+V+ + + + Sbjct: 257 QRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRVVIDVR-KDANAS 315 Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383 +++ +++ + ++T F +NM L GR P+++ L L +L H++ V+ RR+ + ++ Sbjct: 316 VILNNLYKQTPLQTSFGVNMIALVNGR-PKLINLKEALVHYLEHQKTVVRRRTQYNLRKA 374 Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVDAILNLRLRSLR 440 R IL+GL IA +IDEII+ IR D K M S RF L+E Q AIL++RLR L Sbjct: 375 KDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQRFKLSEKQAQAILDMRLRRLT 434 Query: 441 KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500 LE +I++E + LL +++++L + + E+ E+++ F RRT Sbjct: 435 GLERDKIEAEYNELLNYISELEAILADEEVLLQLVRDELTEIRDRFGDD-----RRT--- 486 Query: 501 EVSRADKATLQ-QAMIEKEPITVVISNRGWIRSLKSHSV--------DLSALHFKEGDSL 551 E+ L+ + +I +E I + +S+ +I+ L + + ++ E D + Sbjct: 487 EIQLGGFENLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRAQNRGGRGVQGMNTLEEDFV 546 Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAFV-- 607 + T D +L + G+ Y L + LS + G + I+L +++ I T Sbjct: 547 SQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIELENDEVISTMIAVK 606 Query: 608 -YDSTCKLLVVSSK 620 +S LV ++K Sbjct: 607 DLESEDNFLVFATK 620 >gi|269124012|ref|YP_003306589.1| DNA gyrase, A subunit [Streptobacillus moniliformis DSM 12112] gi|268315338|gb|ACZ01712.1| DNA gyrase, A subunit [Streptobacillus moniliformis DSM 12112] Length = 870 Score = 426 bits (1095), Expect = e-117, Method: Compositional matrix adjust. Identities = 258/682 (37%), Positives = 400/682 (58%), Gaps = 34/682 (4%) Query: 30 YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89 YL Y++S I RA+PD+RDG KPVHRRI++AM E+ ++ + +KKSAR+VGEV+GK HPH Sbjct: 53 YLDYSMSVIVSRALPDVRDGLKPVHRRILYAMDELKMNHNSPYKKSARLVGEVLGKYHPH 112 Query: 90 GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDE 149 GD +VY+S+VR+AQ F RY L+ G GNFG+IDGDSAAA RYTEARM+++AE +L +++ Sbjct: 113 GDSAVYNSMVRMAQDFNTRYMLVDGHGNFGSIDGDSAAAMRYTEARMSKIAEEMLIDINK 172 Query: 150 DAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDN 209 D +D+R ++E EP V P++ PNLL NGT+GIAVGMAT+IP HN+ E+ + +ALIDN Sbjct: 173 DTIDWRKNFDESLDEPTVLPARLPNLLLNGTTGIAVGMATNIPPHNLGELSDGIIALIDN 232 Query: 210 PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIV 269 +ISI++L+ +I GPDFPTGGII + I +Y+ GRG RV A+ + +G IV Sbjct: 233 RDISIDELITHIKGPDFPTGGIIY-GKSGIYSAYKTGRGKVRVSAKTEIITDKKGRQSIV 291 Query: 270 VTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLFPKNRSLDPDLLMES 328 +TE+PYQV K+ LI++I EL+ K I + D+ D S E +RIV+ K + + ++++ Sbjct: 292 ITELPYQVNKANLIKRIGELVKDKIIVGISDLADLSNLEGIRIVIDIK-KGEEAEIVLNK 350 Query: 329 IFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVE 388 + +D++T F + M L + P+++ L IL+++L HR +V+ R++ F + R Sbjct: 351 LLKFTDLQTTFGIIMLAL-VNNAPKILNLKEILEKYLEHRYDVITRKTIFDLNKAKDRAH 409 Query: 389 ILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEY 445 IL+GL A +IDEII+IIR K ++++F TE Q DAIL++RL L L Sbjct: 410 ILEGLRKALDHIDEIISIIRGSKTRALAKESLIAKFEFTEIQTDAILDMRLHRLTGLARE 469 Query: 446 QIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRA 505 +I +E D L+ ++ +L ++++ I E+ E+K+ + G R T E R Sbjct: 470 EIDTEYDKLMLFITDLEDILAKDERKYAIIKEEVLELKQKY------GDARRTSIENDRY 523 Query: 506 DKATLQQAMIEKEPITVVISNRGWIR--SLKSHSVD------LSALHFKEGDSLKIALHA 557 + + +I+ E + V I+ RG+ + SL S+ +S E D LK A Sbjct: 524 EINI--EDLIKNEDVIVTITKRGYAKRMSLDSYKAQKRGGKGVSNTTTIEDDVLKDLFTA 581 Query: 558 HTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAFVYD----ST 611 T D +++ S GK Y++ + +S + G+ I +I+L+ N+ I D Sbjct: 582 KTLDTLMVFSDKGKVYSIKVYEIPEVSKQARGKLIGNIIELDENEKISVIIPVDEIENDN 641 Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV-SSEEKMKLVVKVTG---DHVAVVGEN 667 L+ ++ G A + SE R GK + E+++K V +G D + + + Sbjct: 642 RDLIFITRNGIAKKTKISEFKTINRNGKIAISFKDDEDEVKFVGITSGSEKDEIFISTKG 701 Query: 668 RKLLIFSIDQIPEMSR-GKGVR 688 + F + I M R GVR Sbjct: 702 GMAVRFKEEDIRSMGRTAAGVR 723 >gi|239825590|ref|YP_002948214.1| DNA gyrase subunit A [Geobacillus sp. WCH70] gi|239805883|gb|ACS22948.1| DNA gyrase, A subunit [Geobacillus sp. WCH70] Length = 825 Score = 426 bits (1095), Expect = e-117, Method: Compositional matrix adjust. Identities = 255/718 (35%), Positives = 411/718 (57%), Gaps = 46/718 (6%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 ++ V++ + +L YA+S I RA+PD+RDG KPVHRRI++AM ++G+ +KKSA Sbjct: 9 IREVNISQEMRSSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMHDLGMTADKPYKKSA 68 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 IVGEVIGK HPHGD +VYD++VR+AQ F RY L+ G GNFG+IDGD+AAA RYTEARM Sbjct: 69 HIVGEVIGKYHPHGDAAVYDTMVRMAQDFNYRYVLVDGHGNFGSIDGDAAAAMRYTEARM 128 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 +++A +L+ +++D +D++D Y+ + EPVV PS+FPNLL NG+SGIAVGMAT+IP H + Sbjct: 129 SKIAMEMLRDINKDTIDYQDNYDGSEKEPVVLPSRFPNLLVNGSSGIAVGMATNIPPHQL 188 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ +A LAL NP++++ L+EYI GPDFPT G I+ R I ++Y GRG +RA+ Sbjct: 189 GEVVDAILALSKNPDMTVADLMEYIPGPDFPTAGQII-GRSGIRKAYETGRGSITLRAKV 247 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316 +E+ G I+V E+PYQV K++LIE+IAEL+ K+I + D+RDES ++ Sbjct: 248 EIEQQSNGKEMIIVRELPYQVNKAKLIERIAELVREKKIDGITDLRDESDRSGMRIVIEV 307 Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376 R + +++ +++ + ++T F +NM L G+ P+V+ L L+ +L H++ V+ RR+ Sbjct: 308 RRDANSKVILNNLYKHTALQTNFGINMLALVDGQ-PKVLNLKECLQHYLDHQKTVIRRRT 366 Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAILN 433 ++ ++ + R IL+GL IA ++DE+I +IR+ + ++ +FSL+E Q AIL+ Sbjct: 367 AYELKKAEARAHILEGLRIALDHLDEVINLIRSSQTTEIAREGLMRQFSLSERQAQAILD 426 Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493 +RL+ L LE +I+ E +L+ ++ ++L ++ I E+ E+KE F+ D Sbjct: 427 MRLQRLTGLEREKIEQEYQDLIRLIAELKAILADEEKVLQIIRDELTEIKERFN---DER 483 Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSVDLSALHF 545 R + D + +I +E I + ++++G+I+ L K + +H Sbjct: 484 RTEIVIGGIEEFD----DEDLIPRENIVITLTHKGYIKRLPVSTYKSQKRGGRGVQGMHT 539 Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS-GR-GHGEAIQLLIDLNHNQDIV 603 E D ++ L T D +L + GK Y + GR G I L++L+ ++ I Sbjct: 540 SEDDFVEHLLITSTHDTVLFFTNKGKVYRAKGYEIPEFGRTARGIPIINLLELDKDEWIN 599 Query: 604 TAFV----YDSTCKLLVVSSKG---------NAFIVEESEIIANTRKGKTFLKVSSEEKM 650 T +D L + +G A I I + R+G + V + Sbjct: 600 TIIPINNEFDDNLYLFFTTKQGIAKRSPLSSFAHIRNNGLIAIHLREGDELISVKLTDGS 659 Query: 651 KLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707 K H+ V +N L+ F + M R GV+ + +DG +V+ +I E Sbjct: 660 K--------HIIVGTKNGMLIRFPETDVRTMGRSATGVKAITLEDG--DEVVGMEILE 707 >gi|167038685|ref|YP_001661670.1| DNA gyrase subunit A [Thermoanaerobacter sp. X514] gi|300913755|ref|ZP_07131072.1| DNA gyrase, A subunit [Thermoanaerobacter sp. X561] gi|307723228|ref|YP_003902979.1| DNA gyrase subunit A [Thermoanaerobacter sp. X513] gi|166852925|gb|ABY91334.1| DNA gyrase, A subunit [Thermoanaerobacter sp. X514] gi|300890440|gb|EFK85585.1| DNA gyrase, A subunit [Thermoanaerobacter sp. X561] gi|307580289|gb|ADN53688.1| DNA gyrase, A subunit [Thermoanaerobacter sp. X513] Length = 807 Score = 426 bits (1095), Expect = e-117, Method: Compositional matrix adjust. Identities = 261/703 (37%), Positives = 415/703 (59%), Gaps = 51/703 (7%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 +E V V + +++ Y+ YA+S I RA+PD+RDG KPVHRRI++AM+E+GL +K Sbjct: 5 KEKVIPVGIEDEMKKSYIDYAMSVIVGRALPDVRDGLKPVHRRILYAMNELGLTPDKPYK 64 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KS +VGEV+GK HPHGD +VYD+LVRLAQ F R LI G GNFG+IDGD AA RYTE Sbjct: 65 KSVAVVGEVLGKYHPHGDAAVYDTLVRLAQDFSMRETLIDGHGNFGSIDGDPPAAMRYTE 124 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 AR++++A +L ++++ VDF ++E EPVV PS+FPNLL NG+ GIAVGMAT+IP Sbjct: 125 ARLSKIALEMLTDINKETVDFVPNFDETLKEPVVLPSRFPNLLVNGSQGIAVGMATNIPP 184 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E+ + +A IDNP IS+++L++YI GPDFPTGG+I+ R+ I E+Y GRG VR Sbjct: 185 HNLGEVIDGIIAYIDNPYISVDELMKYIKGPDFPTGGVIL-GRDGIKETYETGRGKIVVR 243 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313 A+ +EE G IV+TEIPY V K++LIEKIAEL+ K I + D+RDES + V+ Sbjct: 244 AKAEIEE-HHGKTRIVITEIPYMVLKAKLIEKIAELVREKHIEGISDLRDESDRNGMKVV 302 Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373 + ++P +++ ++M + M+ F M L G P+++ L I+++++ H+ +V+ Sbjct: 303 IELKKDVNPKVILNKLYMHTQMQQTFGAIMLALVDGE-PKILNLKQIIEKYVDHQADVVT 361 Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLTENQVDA 430 RR+ F ++ + R IL+GL IA +IDE+I IIR+ E K ++ +F L+E Q A Sbjct: 362 RRTKFDLRKAEERAHILEGLKIALDHIDEVINIIRSSKTEAIAKQNLMDKFGLSEKQAQA 421 Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490 I+++RL L LE +++ EL+ L+ + +++ +L ++ I E+ E+K+ ++ Sbjct: 422 IVDMRLGRLTGLERQKVEDELEELMEKIKELKGILADERKVLEIIKKELLEIKDKYATP- 480 Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSVDLSA 542 R+T V++ ++ L+ +++ E + V +++ G+I+ + K + Sbjct: 481 ----RKTNI--VAKEEELDLED-LVQLEDVVVTMTHYGYIKRMPLDTYKAQKRGGKGILG 533 Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-------------GHGE 588 + +E D ++ T DR+L + GK Y+L ++ +GR G GE Sbjct: 534 ISTREDDFVRDIFITTTHDRLLFFTNKGKVYSLRTIDIPETGRQAKGTAIVNLIQIGQGE 593 Query: 589 AIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE 648 + +I L +QDI +V T K ++ + F + K + ++ EE Sbjct: 594 KVTAVIPLKKSQDI--KYVVMCTKKGIIKKTSIEEF---------RSIKRNGIIAITLEE 642 Query: 649 KMKLV-VKVT-GDHVAVVGENRKLLI-FSIDQIPEMSR-GKGV 687 +L+ VK+T G+ ++G R I F+ I M R KGV Sbjct: 643 SDELINVKLTNGEREIIIGTARGYAIRFNEKDIRPMGRVAKGV 685 >gi|120553949|ref|YP_958300.1| DNA gyrase, A subunit [Marinobacter aquaeolei VT8] gi|120323798|gb|ABM18113.1| DNA gyrase subunit A [Marinobacter aquaeolei VT8] Length = 856 Score = 426 bits (1095), Expect = e-117, Method: Compositional matrix adjust. Identities = 276/770 (35%), Positives = 425/770 (55%), Gaps = 118/770 (15%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 V++ L++ YL YA+S I RA+PD+RDG KPVHRR++ AMSE+G D+ A+KKSAR+V Sbjct: 11 VNIEDELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELGNDWNKAYKKSARVV 70 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGD +VYD++VR+AQPF RYPL+ GQGNFG+IDGD+AAA RYTE RM ++ Sbjct: 71 GDVIGKYHPHGDSAVYDTIVRMAQPFSLRYPLVDGQGNFGSIDGDNAAAMRYTEIRMEKI 130 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A +L +D++ VD+ D Y+ + P V P++ PNLL NG+SGIAVGMAT+IP HN+ E+ Sbjct: 131 AHSLLADLDKETVDYVDNYDGTERIPEVLPTRVPNLLVNGSSGIAVGMATNIPPHNLTEV 190 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 LALIDNP++++++L+E+I GPDFPT GII R IVE+YR GRG +RAR +E Sbjct: 191 VNGCLALIDNPDLTVDELMEFIPGPDFPTQGII-NGRAGIVEAYRTGRGRIYIRARHEIE 249 Query: 260 EVGR-GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFPKN 317 + + G I++TE+PYQ+ K+RLIEKIAEL+ KR+ + ++RDES E +R+V+ + Sbjct: 250 QDKKTGRESIIITELPYQLNKARLIEKIAELVKEKRLEGISELRDESNKEGIRVVIELR- 308 Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377 R +PD+++ ++F + +ET F +NM L G P+ + L +L ++ HRREV+ RR+ Sbjct: 309 RGENPDVIINNLFAQTQLETVFGINMVALINGE-PKTLNLKEMLDAFVRHRREVVTRRTI 367 Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIR----------------------------- 408 + ++ R IL+GL +A NIDEII +I+ Sbjct: 368 YELRKARERGHILEGLTVALANIDEIIELIKRSPSAAEAKEKLMDKGWAPGDVLAMLERA 427 Query: 409 NEDKPKP--------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEK 460 ED +P + + L+ Q AIL+LRL L LE ++++E +L EK Sbjct: 428 GEDACRPDDLPEIYGLREGLYHLSPEQAQAILDLRLHRLTGLETEKLQNEYKEIL---EK 484 Query: 461 IDSLLN--SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518 I LL+ ++ Q+ + E+ EI S+ D RRT E++ + + +I++E Sbjct: 485 IADLLDILGDPERLMQVIRD--ELAEIVSQYGD--ERRT---EITSSRRDLTIADLIDEE 537 Query: 519 PITVVISNRGWIRSLKSHSVDL--------SALHFKEGDSLKIALHAHTTDRILLLSTDG 570 + V IS+ G+ ++ +A K+ D ++ L A++ D IL S G Sbjct: 538 DLVVTISHSGYAKTQAVEDYQAQRRGGRGKAATSMKDEDFIEKLLVANSHDTILCFSNKG 597 Query: 571 KAYTL-----PAGNLLS-GR--------GHGEAIQ------------------------- 591 K Y L P G+ S GR GE I Sbjct: 598 KVYWLRVFEIPRGSRGSRGRPMVNILPLDEGERITTFLPVRDYPEDQFVLMATSAGVVKK 657 Query: 592 --------------LLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEI--IANT 635 + ++L+ ++ A + D + ++++ SS G A +E ++ ++ T Sbjct: 658 TPLPNFSRPRSSGLIALNLDEGDTLIGAAITDGSAEVMLFSSAGKAVRFQEEQVRPMSRT 717 Query: 636 RKGKTFLKV-SSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRG 684 +G +K+ + L++ G + E+ +ID+ P SRG Sbjct: 718 ARGVRGIKMPEGHHVVSLIIPQEGGVILTASEHGYGKRTAIDEFPAYSRG 767 >gi|91227187|ref|ZP_01261646.1| DNA gyrase, subunit A [Vibrio alginolyticus 12G01] gi|91188715|gb|EAS75003.1| DNA gyrase, subunit A [Vibrio alginolyticus 12G01] Length = 906 Score = 426 bits (1095), Expect = e-117, Method: Compositional matrix adjust. Identities = 246/605 (40%), Positives = 362/605 (59%), Gaps = 57/605 (9%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + V++ L YL YA+S I RA+PD+RDG KPVHRR++ AM+ +G D+ +KKSA Sbjct: 8 ITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSA 67 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG+IDGDSAAA RYTE RM Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVRM 127 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 ++A +L +D++ VD+ Y+ + P V P+K PNLL NG SGIAVGMAT+IP HN+ Sbjct: 128 AKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGASGIAVGMATNIPPHNL 187 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ + LA I+N EI+I++L++YI GPDFPT +I R+ IV++Y+ GRG +R++ Sbjct: 188 GEVIDGCLAYINNEEITIDELMDYIPGPDFPTAALI-SGRKGIVDAYKTGRGKIYMRSKA 246 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFP 315 +E G I+VTEIPYQV K+RLIEKIAEL+ K++ + +RDES +D +RIV+ Sbjct: 247 DIEVEKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIEC 306 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 K ++ ++++ +++ + ++T F +NM L+ G+ PQ+ L +LK ++ HRREV+ RR Sbjct: 307 KRDAVG-EVVLNNLYAQTQLQTTFGINMVALNNGQ-PQLFNLKDMLKCFVDHRREVVTRR 364 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR------------ 420 + F ++ R IL+GL +A NIDEII +IR P K +++R Sbjct: 365 TIFELRKARERAHILEGLALALANIDEIIELIRKAPTPAEAKAGLIARGWDLGNVSAMLE 424 Query: 421 ----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458 + LTE Q AIL+LRL L LE +I E LL E Sbjct: 425 RAGTDAARPEWLEPEYGIRDGQYFLTEQQAQAILDLRLHKLTGLEHEKILGEYKTLLEEI 484 Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518 ++ +L S ++ I E+ V++ F + RRT E++ A + +I +E Sbjct: 485 AELMHILASTERLMEVIREELEAVRDGFGDA-----RRT---EITAASHDIDMEELIARE 536 Query: 519 PITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570 + V +S+ G+++ S + SA K+ D ++ L A+T D IL ST G Sbjct: 537 DVVVTLSHGGYVKYQVLSDYESQRRGGKGKSATKMKDEDHIERLLVANTHDNILCFSTRG 596 Query: 571 KAYTL 575 K Y L Sbjct: 597 KTYRL 601 >gi|255322135|ref|ZP_05363282.1| DNA gyrase, A subunit [Campylobacter showae RM3277] gi|255300833|gb|EET80103.1| DNA gyrase, A subunit [Campylobacter showae RM3277] Length = 872 Score = 426 bits (1095), Expect = e-117, Method: Compositional matrix adjust. Identities = 244/617 (39%), Positives = 386/617 (62%), Gaps = 36/617 (5%) Query: 3 VDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62 ++NI +N ++++AV + +++ YL Y++S I RA+PD RDG KPVHRRI++AM+ Sbjct: 1 MENIFENN----QDIQAVDIEESIKTSYLDYSMSVIVGRALPDARDGLKPVHRRILYAMN 56 Query: 63 EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122 +G+ + + KSARIVG+VIGK HPHGD +VYD+LVR+AQ F RYP + GQGNFG+ID Sbjct: 57 NLGVGSRSPYMKSARIVGDVIGKYHPHGDTAVYDALVRMAQKFSMRYPAVDGQGNFGSID 116 Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182 GD AAA RYTEARMT + E IL+ +++D VDF Y++ ++EP V PS+ PNLL NG+SG Sbjct: 117 GDGAAAMRYTEARMTNLTEEILRDIEKDTVDFIPNYDDRETEPDVLPSRVPNLLLNGSSG 176 Query: 183 IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242 IAVGMAT+IP H++ E+ + L +++N ++E++++YI GPDFPTGGII ++ I+E+ Sbjct: 177 IAVGMATNIPPHSLDELIDGLLLVLENKNATLEEVMQYIKGPDFPTGGIIF-GKKGIIEA 235 Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302 YR GRG ++RA+ +E+ IVV E+PYQ K+RLIE+IAEL+ K+I + ++R Sbjct: 236 YRTGRGRVKLRAKTHIEK-KPNKDVIVVDELPYQTNKARLIEQIAELVKEKQIEGISEVR 294 Query: 303 DESAED-VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361 DES +D +R+V+ K ++ D+++ ++F + ME+ F + M ++ + P+V L +L Sbjct: 295 DESDKDGIRVVIELKRDAM-SDIVLNNLFKSTTMESTFGVIMLAIN-NKEPKVFNLIELL 352 Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE-DKP--KPVMV 418 K +L HR+ V+ RR+ F ++ R IL+GL IA NIDE+I +I+N D P + +V Sbjct: 353 KLFLNHRKTVIIRRTIFDLEKARARAHILEGLKIALDNIDEVIELIKNSADTPSAREGLV 412 Query: 419 SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE 478 ++F L+E Q +AIL++RL L LE ++++EL L+AE ++D +L S I E Sbjct: 413 AKFGLSELQANAILDMRLSKLTGLEREKLEAELAELMAEIARLDEILKSETLLEKLIKDE 472 Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV 538 + E+K F + E+ + +I E + V I++RG+I+ + S Sbjct: 473 LLEIKNKF--------KVPRITEIVDDYDDIDIEDLIPNENMVVTITHRGYIKRVPSKQY 524 Query: 539 DLS--------ALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRG 585 + A+ + D ++ ++T D ++ ++ G K Y +P G S Sbjct: 525 EKQKRGGKGKVAVTTYDDDFIESFFTSNTHDTLMFVTDRGQLYWLKVYKIPEG---SRTA 581 Query: 586 HGEAIQLLIDLNHNQDI 602 G+A+ LI L ++ I Sbjct: 582 KGKAVVNLIQLQPDEKI 598 >gi|319404135|emb|CBI77726.1| DNA gyrase subunit A [Bartonella rochalimae ATCC BAA-1498] Length = 922 Score = 426 bits (1095), Expect = e-117, Method: Compositional matrix adjust. Identities = 255/708 (36%), Positives = 394/708 (55%), Gaps = 62/708 (8%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 ++ VS+ ++ YL YA+S I RA+PD+RDG KPVHRRI+HAM+EMGL F +++KSA Sbjct: 16 IEPVSIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAMNEMGLSFNKSYRKSA 75 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 +VGEV+GK HPHGD S+YD+LVR+AQ F R PLI GQGNFG++DGD AA RYTE R+ Sbjct: 76 GVVGEVMGKFHPHGDASIYDALVRMAQDFSLRNPLIDGQGNFGSVDGDPPAAMRYTECRL 135 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 +VAE +L +D++ VDF+D Y+ + EP+V P++FPNLL NG+ GIAVGMAT+IP HN+ Sbjct: 136 EKVAEELLADIDKETVDFQDNYDGREREPIVLPARFPNLLVNGSGGIAVGMATNIPPHNL 195 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ + +ALIDNP I++++++E I GPDFPTGGII+ R + +Y GRG +RA+ Sbjct: 196 GEVIDGCIALIDNPNITLDEIIEIIPGPDFPTGGIIL-GRSGVRSAYETGRGSIIMRAKV 254 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316 +EE+ I+V+EIPYQ+ K+ +IEKIAEL+ KRI + D+RDES D V+ Sbjct: 255 DIEEIRNNRQAIIVSEIPYQINKATMIEKIAELVRDKRIEGISDLRDESDRDGYRVVIEL 314 Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376 R D+++ ++ + ++T F NM L+ G+ P+ M L +L+ +++ R EV+ RR+ Sbjct: 315 KREAVADIVLNQLYRYTPLQTSFGCNMVALNGGK-PEQMTLLDMLRAFVSFREEVVSRRT 373 Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV------------------ 418 + ++ R +L GL IA NIDEIIA+IR P+ V Sbjct: 374 KYLLRKARERAHVLVGLAIAVANIDEIIALIRTAPDPQTARVQLMERRWLAADVASLIKL 433 Query: 419 -----------SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467 + ++L+E Q AIL LRL+ L L +I EL+ + + +L+S Sbjct: 434 IDDPRHIIHEDNTYNLSEEQARAILELRLQRLTALGRDEIADELNKIGVDITDYLHILSS 493 Query: 468 GKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNR 527 + + E+ ++E F RRT F + + +I E + V +S+ Sbjct: 494 RLRIMGIVKNELSTLREEFVTP-----RRTVF---GFGNAEMDNEDLIVPEDMVVTVSHS 545 Query: 528 GWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYT 574 G+I R+ + S + K+ D + ++T +L S+ G K + Sbjct: 546 GYIKRVPLNTYRAQRRGGKGRSGMSTKDEDFVTRLFVSNTHTPVLFFSSRGIVYKEKVWR 605 Query: 575 LPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD------STCKLLVVSSKGNAFIVEE 628 LP G + + G A+ ++ L + I T S ++ +++G + Sbjct: 606 LPIG---TPQSRGRALVNMLPLQEGERITTIMPLPEDEASWSELDVMFATTRGTVRRNKL 662 Query: 629 SEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSI 675 S+ I R GK +K+ E+++ V T D V + N + + F + Sbjct: 663 SDFIQVNRNGKIAMKLDDEDEILSVETCTERDDVVLTTANGQCIRFPV 710 >gi|307243420|ref|ZP_07525577.1| DNA gyrase, A subunit [Peptostreptococcus stomatis DSM 17678] gi|306493230|gb|EFM65226.1| DNA gyrase, A subunit [Peptostreptococcus stomatis DSM 17678] Length = 812 Score = 426 bits (1095), Expect = e-117, Method: Compositional matrix adjust. Identities = 232/602 (38%), Positives = 377/602 (62%), Gaps = 25/602 (4%) Query: 26 LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85 +++ Y+ Y++S I RA+PD+RDG KPVHRRI+++M E G+ ++KSARIVG+V+GK Sbjct: 16 MKKSYIDYSMSVIVGRALPDVRDGLKPVHRRILYSMIEQGITPDKPYRKSARIVGDVLGK 75 Query: 86 LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145 HPHGD SVY ++V++AQ F R L+ GQGNFGN+DGDS AA RYTEARM+++A +L+ Sbjct: 76 YHPHGDSSVYMAMVKMAQDFATRGLLVDGQGNFGNVDGDSPAAMRYTEARMSRLATELLR 135 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 +D++ VDF ++E EP+V P+K+PNLL NG++GIAVGMATSIP HN+ E+ +A + Sbjct: 136 DIDKETVDFGPNFDESLQEPLVLPAKYPNLLVNGSNGIAVGMATSIPPHNLGEVIDATVH 195 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265 IDN + + E L+E+I GPDFPTG +I+ + E I E+YR GRG RVRAR +EE+ +G Sbjct: 196 YIDNRDCTTEDLMEHISGPDFPTGAMIIGT-EGIKEAYRTGRGKVRVRARAEIEELPKGK 254 Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLFPKNRSLDPDL 324 IV+TEIP+QV KSRL+E+IA+L+ K++ + D+RDE+ +R+V+ K R ++ ++ Sbjct: 255 QQIVITEIPFQVNKSRLVERIADLVRDKKVEGISDLRDETNRHGIRVVIELK-RDVNANI 313 Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384 ++ +++ S +E F + +N+ + + P+V+ L L+ ++ H+++V+ RR+ F ++ Sbjct: 314 ILNNLYKHSQLEETFSI-INLAIVDKTPKVLNLKQYLECYVDHQKDVITRRTQFELKKAQ 372 Query: 385 RRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAILNLRLRSLRK 441 R IL+GL IA NID +I+IIR + K ++ F+L++ Q AIL++RL+ L Sbjct: 373 ARAHILEGLKIALDNIDRVISIIRGSENGQIAKEKLIEEFALSDIQAQAILDMRLQRLTG 432 Query: 442 LEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCE 501 LE +I +E L+ ++S+L + + I E+ +K+ ++ RRT E Sbjct: 433 LERDKIDNEYKELMERITYLESILADENKLFGVIKDEMLAIKDKYADP-----RRT---E 484 Query: 502 VSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD--------LSALHFKEGDSLKI 553 + A+ + + E+E I + +++ G+I+ L + + +SAL +E D + Sbjct: 485 IKPAEGEIALKDLYEEEEIAITLTHLGYIKRLPADTYKSQKRGGRGISALTTREEDFVTD 544 Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFVYDST 611 + T +L + G+ Y L A + G+ G AI L+ LN + I +++ Sbjct: 545 LISTTTHSLMLFFTNRGRVYKLNAYEVPEGKRTSKGTAIVNLLQLNPGEKIARTISFNTD 604 Query: 612 CK 613 K Sbjct: 605 SK 606 >gi|70725007|ref|YP_251921.1| DNA gyrase subunit A [Staphylococcus haemolyticus JCSC1435] gi|68445731|dbj|BAE03315.1| DNA gyrase (topoisomerase II) subunit A [Staphylococcus haemolyticus JCSC1435] Length = 899 Score = 426 bits (1095), Expect = e-117, Method: Compositional matrix adjust. Identities = 236/594 (39%), Positives = 366/594 (61%), Gaps = 25/594 (4%) Query: 26 LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85 + E +L YA+S I RA+PD+RDG KPVHRRI++ ++E G+ +KKSARIVG+V+GK Sbjct: 18 MRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKSARIVGDVMGK 77 Query: 86 LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145 HPHGD S+YD++VR+AQ F RYPL+ GQGNFG++DGD AAA RYTEA+MT++ +L+ Sbjct: 78 YHPHGDLSIYDAMVRMAQTFSYRYPLVDGQGNFGSMDGDGAAAMRYTEAKMTKITLELLR 137 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 +++D +DF D Y+ + EP V PS+FPNLL NG SGIAVGMAT+IP HN+ E+ L Sbjct: 138 DINKDTIDFLDNYDGTEREPEVLPSRFPNLLVNGASGIAVGMATNIPPHNLTEVINGVLH 197 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265 L NP+++I +L+E I GPDFPT G+I+ + I +Y GRG ++RAR +EE G G Sbjct: 198 LSKNPDVTIAELMEDIQGPDFPTAGLIL-GKSGIRRAYETGRGSIQMRARAEIEERGGGR 256 Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA--EDVRIVLFPKNRSLDPD 323 IVVT+IPYQV K+R+IEKIAEL+ K+I + D+RDE++ VR+V+ + + + + Sbjct: 257 QRIVVTQIPYQVNKARMIEKIAELVREKKIEGITDLRDETSLRTGVRVVIDVR-KDANAN 315 Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383 +++ +++ + ++T F +NM L GR P+++ L L E+L H++ V+ RR+ + ++ Sbjct: 316 VILNNLYKQTPLQTSFGVNMIALVNGR-PKLINLKQALVEYLEHQKTVVRRRTEYNLKKA 374 Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVDAILNLRLRSLR 440 R IL+GL IA +IDEII IR + K M + RF L+E Q AIL++RLR L Sbjct: 375 KDRAHILEGLRIALDHIDEIITTIRESETDKVAMETLQERFKLSERQAQAILDMRLRRLT 434 Query: 441 KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500 LE +I++E + LL +++ +L + + E+ ++KE F G R T Sbjct: 435 GLERDKIENEYNELLGYISELEEILADDEVLLQLVRDELTDIKERF------GDERRTEI 488 Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DLSALHFKEGDSLK 552 ++ D + +I +E I + +S+ +I+ L + + ++ E D + Sbjct: 489 QLGGLDDLE-DEDLIPEEQIVITLSHNNYIKRLPVSTYRSQHRGGRGVQGMNTLEEDFVS 547 Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVT 604 + T D +L + G+ Y L + LS + G + I+L++++ I T Sbjct: 548 QLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPVINAIELDNDETIST 601 >gi|262393882|ref|YP_003285736.1| DNA gyrase subunit A [Vibrio sp. Ex25] gi|262337476|gb|ACY51271.1| DNA gyrase subunit A [Vibrio sp. Ex25] Length = 906 Score = 426 bits (1095), Expect = e-117, Method: Compositional matrix adjust. Identities = 246/605 (40%), Positives = 362/605 (59%), Gaps = 57/605 (9%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + V++ L YL YA+S I RA+PD+RDG KPVHRR++ AM+ +G D+ +KKSA Sbjct: 8 ITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSA 67 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG+IDGDSAAA RYTE RM Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVRM 127 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 ++A +L +D++ VD+ Y+ + P V P+K PNLL NG SGIAVGMAT+IP HN+ Sbjct: 128 AKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGASGIAVGMATNIPPHNL 187 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ + LA I+N EI+I++L++YI GPDFPT +I R+ IV++Y+ GRG +R++ Sbjct: 188 GEVIDGCLAYINNEEITIDELMDYIPGPDFPTAALI-SGRKGIVDAYKTGRGKIYMRSKA 246 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFP 315 +E G I+VTEIPYQV K+RLIEKIAEL+ K++ + +RDES +D +RIV+ Sbjct: 247 DIEVEKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIEC 306 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 K ++ ++++ +++ + ++T F +NM L+ G+ PQ+ L +LK ++ HRREV+ RR Sbjct: 307 KRDAVG-EVVLNNLYAQTQLQTTFGINMVALNNGQ-PQLFNLKDMLKCFVDHRREVVTRR 364 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR------------ 420 + F ++ R IL+GL +A NIDEII +IR P K +++R Sbjct: 365 TIFELRKARERAHILEGLALALANIDEIIELIRKAPTPAEAKAGLIARGWDLGNVSAMLE 424 Query: 421 ----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458 + LTE Q AIL+LRL L LE +I E LL E Sbjct: 425 RAGTDAARPEWLEPEYGIRDGQYFLTEQQAQAILDLRLHKLTGLEHEKILGEYKTLLEEI 484 Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518 ++ +L S ++ I E+ V++ F + RRT E++ A + +I +E Sbjct: 485 AELMHILASTERLMEVIREELEAVRDGFGDA-----RRT---EITAASHDIDMEELIARE 536 Query: 519 PITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570 + V +S+ G+++ S + SA K+ D ++ L A+T D IL ST G Sbjct: 537 DVVVTLSHGGYVKYQVLSDYESQRRGGKGKSATKMKDEDHIERLLVANTHDNILCFSTRG 596 Query: 571 KAYTL 575 K Y L Sbjct: 597 KTYRL 601 >gi|212637855|ref|YP_002314375.1| DNA gyrase subunit A [Anoxybacillus flavithermus WK1] gi|212559335|gb|ACJ32390.1| DNA gyrase subunit A [Anoxybacillus flavithermus WK1] Length = 816 Score = 426 bits (1095), Expect = e-117, Method: Compositional matrix adjust. Identities = 228/571 (39%), Positives = 359/571 (62%), Gaps = 22/571 (3%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 E VK VS+ + +L YA+S I RA+PD+RDG KPVHRRI++AM ++G+ +KK Sbjct: 3 ERVKEVSISQEMRASFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMHDLGMTADKPYKK 62 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 SARIVGEVIGK HPHGD +VYD++VR+AQ F RY L+ G GNFG+IDGD+AAA RYTEA Sbjct: 63 SARIVGEVIGKYHPHGDAAVYDTMVRMAQDFNYRYMLVDGHGNFGSIDGDAAAAMRYTEA 122 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 RM++++ +L+ +++D +D++D Y+ + EP+V P++FPNLL NG+SGIAVGMAT+IP H Sbjct: 123 RMSKISMELLRDINKDTIDYQDNYDGSEREPIVLPARFPNLLVNGSSGIAVGMATNIPPH 182 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 + E+ +A L L+ +P+++I +L+EY+ GPDFPTG I+ R I ++Y GRG +RA Sbjct: 183 QLGEVIDALLELMKDPDMTIAELMEYLPGPDFPTGAQII-GRGGIRKAYETGRGSITLRA 241 Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314 + +E+ G I+V E+PYQV K++LIEKIAEL+ K+I + D+RDES ++ Sbjct: 242 KAEIEQKENGKEVIIVRELPYQVNKAKLIEKIAELVREKKIDGITDLRDESDRSGMRIVI 301 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 R + +++ +++ + ++T F +NM L G+ P+V+ L L+ +L H++ V+ R Sbjct: 302 EVRRDVSAHVVLNNLYKQTALQTGFGINMLALVDGQ-PKVLNLKQCLQHYLDHQKIVIRR 360 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAI 431 R+ F + + R IL+GL IA ++DE+I +IR D K ++++F L+E Q AI Sbjct: 361 RTQFELNKAEARAHILEGLRIALDHLDEVIELIRQSATVDVAKEGLMTKFQLSEKQAQAI 420 Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491 L++RL+ L LE +I+ E + L+ + ++L ++ I E+ E+KE F+ Sbjct: 421 LDMRLQRLTGLEREKIEQEYEELVKLIAHLKAILADEQKVLQIIRDELLEIKEKFNDY-- 478 Query: 492 LGRRRTTFCEVSRADKATL-QQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSA 542 RRT E+ T+ + +I +E I V +++RG+I RS + + Sbjct: 479 ---RRT---EIVNGGLETIDDEDLITRENIVVTLTHRGYIKRLPVSTYRSQRRGGRGIQG 532 Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573 ++ E D ++ + T D +L + GK Y Sbjct: 533 MNTNEDDFVEHLVITSTHDIVLFFTNKGKVY 563 >gi|57865926|ref|YP_190089.1| DNA gyrase, A subunit [Staphylococcus epidermidis RP62A] gi|81672841|sp|Q5HK04|GYRA_STAEQ RecName: Full=DNA gyrase subunit A gi|57636584|gb|AAW53372.1| DNA gyrase, A subunit [Staphylococcus epidermidis RP62A] Length = 893 Score = 426 bits (1095), Expect = e-117, Method: Compositional matrix adjust. Identities = 260/694 (37%), Positives = 408/694 (58%), Gaps = 37/694 (5%) Query: 26 LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85 + E +L YA+S I RA+PD+RDG KPVHRRI++ ++E G+ +KKSARIVG+V+GK Sbjct: 18 MRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKSARIVGDVMGK 77 Query: 86 LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145 HPHGD S+Y+++VR+AQ F RYPL+ GQGNFG++DGD AAA RYTEARMT++ +L+ Sbjct: 78 YHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEARMTKITLELLR 137 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 +++D +DF D Y+ + EP V P++FPNLL NG +GIAVGMAT+IP HN+ E+ + L+ Sbjct: 138 DINKDTIDFIDNYDGNEREPSVLPARFPNLLVNGAAGIAVGMATNIPPHNLTEVIDGVLS 197 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265 L NP+I+I +L+E I GPDFPT G+++ + I +Y GRG ++R+R +EE G G Sbjct: 198 LSKNPDITINELMEDIQGPDFPTAGLVL-GKSGIRRAYETGRGSIQMRSRAEIEERGGGR 256 Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA--EDVRIVLFPKNRSLDPD 323 IVVTEIP+QV K+R+IEKIAEL+ K+I + D+RDE++ VR+V+ + + + Sbjct: 257 QRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRVVIDVR-KDANAS 315 Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383 +++ +++ + ++T F +NM L R P+++ L L +L H++ V+ RR+ + ++ Sbjct: 316 VILNNLYKQTPLQTSFGVNMIALVNSR-PKLINLKEALIHYLEHQKTVVRRRTEYNLKKA 374 Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVDAILNLRLRSLR 440 R IL+GL IA +IDEII IR D K M S RF LTE Q AIL++RLR L Sbjct: 375 RDRAHILEGLRIALDHIDEIITTIRESDTDKIAMASLQERFKLTERQAQAILDMRLRRLT 434 Query: 441 KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500 LE +I+SE + LL ++++ +L + + E+ E+KE F RRT Sbjct: 435 GLERDKIESEYNELLEYIKELEEILADEEVLLQLVRDELTEIKERFGDE-----RRT--- 486 Query: 501 EVSRADKATLQ-QAMIEKEPITVVISNRGWIRSLKSHSV--------DLSALHFKEGDSL 551 E+ L+ + +I +E I + +S+ +I+ L + + ++ + D + Sbjct: 487 EIQLGGLEDLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRSQNRGGRGIQGMNTLDEDFV 546 Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAFV-- 607 + T D +L + G+ Y L + LS + G I I+L +++ I T Sbjct: 547 SQLVTMSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPIINAIELENDETISTMIAVK 606 Query: 608 -YDSTCKLLVVSSKGNAFIVEESEIIANTR---KGKTFLKVSSEEKMKLVVKVTGDHVAV 663 +S LV ++K IV+ S + +R GK + ++++ V TG+ + Sbjct: 607 DLESEEDYLVFATKQG--IVKRSSLSNFSRINKNGKIAINFKEDDELIAVRLTTGNEDIL 664 Query: 664 VGENRKLLI-FSIDQIPEMSR-GKGVRLQSYKDG 695 +G LI FS + + R GV+ S ++G Sbjct: 665 IGTAHASLIRFSESTLRPLGRTAAGVKGISLREG 698 >gi|257388770|ref|YP_003178543.1| DNA gyrase subunit alpha [Halomicrobium mukohataei DSM 12286] gi|257171077|gb|ACV48836.1| DNA gyrase, A subunit [Halomicrobium mukohataei DSM 12286] Length = 819 Score = 426 bits (1094), Expect = e-117, Method: Compositional matrix adjust. Identities = 262/705 (37%), Positives = 410/705 (58%), Gaps = 48/705 (6%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 V V + +E+ Y+ YA+S I RA+PD+RDG KPVHRRI++AM EMG+ +A +KS+ Sbjct: 17 VDRVRIEDEMEQSYIDYAMSVIAGRALPDVRDGLKPVHRRILYAMHEMGVSSRSAHRKSS 76 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 IVGE +G HPHGD ++YD+LVR+AQPF RYPL+ GQGNFG++DGD AAA RYTEARM Sbjct: 77 SIVGETMGDYHPHGDSAIYDTLVRMAQPFSMRYPLVDGQGNFGSMDGDPAAAMRYTEARM 136 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 + ++E +L +++D VDF+ Y++ EP V PS PNLL NG+SGIAVGM+T+IP HN+ Sbjct: 137 SPISEELLADIEKDTVDFQSNYDDRLREPEVLPSAMPNLLVNGSSGIAVGMSTNIPPHNL 196 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ +A + LIDNP+ +E L++++ GPDFPTGG IV +++I +Y GRG RVRA + Sbjct: 197 GEVIDATVHLIDNPDCEVEDLMDHVKGPDFPTGGNIV-GKDAIYSAYATGRGRLRVRADY 255 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFP 315 EV IVVTEIPYQ K+R++E+IAE + I + D+RDES + VRIV+ Sbjct: 256 ---EVDPEENRIVVTEIPYQENKARMVERIAEDVNEGVIEGIADLRDESDRNGVRIVVEL 312 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 K R + D++ E+ + S +E+ F + +N+ + P+V+ L L+ ++AHR+EV+ RR Sbjct: 313 K-RGANVDVV-ENQLLESHLESTFGV-INLALVDDEPRVLTLKETLEHYVAHRKEVVRRR 369 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAIL 432 S F + R IL+G L A N+D+++ +I++ D+ + + S+F +E Q I+ Sbjct: 370 SQFELDEAQDRAHILEGRLKALQNVDDVVELIQDSEDRDEARTELRSQFDFSEEQAAHIV 429 Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492 ++L SL +E +I+SE +++ A E++ ++L+S + I E+RE+K + Sbjct: 430 RMQLGSLTSMETAEIESEYEDVQARIERLQTILDSEDELLTVIKDELREIKAEYDDD--- 486 Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS--------ALH 544 R+T+ E A+ + +I +E VVI+ +I+ + + D Sbjct: 487 --RKTSILE---AEGEVTHEDLIPEEDCVVVITEDDYIKRMPVDAFDAQNRGGKGIIGSD 541 Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDI 602 K+GD + A++ D +L + G+ Y L + +S G++ +IDL +++I Sbjct: 542 PKDGDRVSKVFRANSHDYLLCFTNQGQVYRLKTYEIPEMSRTARGKSAVNIIDLGDDEEI 601 Query: 603 VTAFVYD----STCKLLVVSSKGNAFI----VEESEIIANTRKGKTFLKVSSEEKMKLV- 653 D C +V N ++ V+E E I +T + E+ LV Sbjct: 602 TAVVSTDDFEEDECLTMVTR---NGYVKRTCVDEFENILST----GIIAAKLEDGDALVD 654 Query: 654 VKVTGD--HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDG 695 V+VT D + V E + F ++ EM R +GVR +DG Sbjct: 655 VEVTDDSGDLVVATEGGMTIRFDESEVREMGRSARGVRGIDLQDG 699 >gi|15925711|ref|NP_373244.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus N315] gi|258438585|ref|ZP_05689808.1| hypothetical protein SAKG_01060 [Staphylococcus aureus A9299] gi|258443959|ref|ZP_05692297.1| hypothetical protein SAJG_01377 [Staphylococcus aureus A8115] gi|269201696|ref|YP_003280965.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus ED98] gi|282894285|ref|ZP_06302515.1| DNA gyrase, A subunit [Staphylococcus aureus A8117] gi|296275681|ref|ZP_06858188.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus MR1] gi|38605032|sp|Q99XG5|GYRA_STAAN RecName: Full=DNA gyrase subunit A gi|13699923|dbj|BAB41222.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus N315] gi|257848144|gb|EEV72136.1| hypothetical protein SAKG_01060 [Staphylococcus aureus A9299] gi|257850843|gb|EEV74787.1| hypothetical protein SAJG_01377 [Staphylococcus aureus A8115] gi|262073986|gb|ACY09959.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus ED98] gi|282763330|gb|EFC03460.1| DNA gyrase, A subunit [Staphylococcus aureus A8117] Length = 889 Score = 426 bits (1094), Expect = e-117, Method: Compositional matrix adjust. Identities = 242/614 (39%), Positives = 376/614 (61%), Gaps = 30/614 (4%) Query: 26 LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85 + E +L YA+S I RA+PD+RDG KPVHRRI++ ++E G+ ++KKSARIVG+V+GK Sbjct: 18 MRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDKSYKKSARIVGDVMGK 77 Query: 86 LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145 HPHGD S+Y+++VR+AQ F RYPL+ GQGNFG++DGD AAA RYTEARMT++ +L+ Sbjct: 78 YHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEARMTKITLELLR 137 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 +++D +DF D Y+ + EP V P++FPNLLANG SGIAVGMAT+IP HN+ E+ L+ Sbjct: 138 DINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATNIPPHNLTELINGVLS 197 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265 L NP+ISI +L+E I GPDFPT G+I+ + I +Y GRG ++R+R +EE G G Sbjct: 198 LSKNPDISIAELMEDIEGPDFPTAGLIL-GKSGIRRAYETGRGSIQMRSRAVIEERGGGR 256 Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA--EDVRIVLFPKNRSLDPD 323 IVVTEIP+QV K+R+IEKIAEL+ K+I + D+RDE++ VR+V+ + + + Sbjct: 257 QRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRVVIDVR-KDANAS 315 Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383 +++ +++ + ++T F +NM L GR P+++ L L +L H++ V+ RR+ + ++ Sbjct: 316 VILNNLYKQTPLQTSFGVNMIALVNGR-PKLINLKEALVHYLEHQKTVVRRRTQYNLRKA 374 Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVDAILNLRLRSLR 440 R IL+GL IA +IDEII+ IR D K M S RF L+E Q AIL++RLR L Sbjct: 375 KDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQRFKLSEKQAQAILDMRLRRLT 434 Query: 441 KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500 LE +I++E + LL +++++L + + E+ E+++ F RRT Sbjct: 435 GLERDKIEAEYNELLNYISELETILADEEVLLQLVRDELTEIRDRFGDD-----RRT--- 486 Query: 501 EVSRADKATLQ-QAMIEKEPITVVISNRGWIRSLKSHSV--------DLSALHFKEGDSL 551 E+ L+ + +I +E I + +S+ +I+ L + + ++ E D + Sbjct: 487 EIQLGGFEDLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRAQNRGGRGVQGMNTLEEDFV 546 Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAFV-- 607 + T D +L + G+ Y L + LS + G + I+L +++ I T Sbjct: 547 SQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIELENDEVISTMIAVK 606 Query: 608 -YDSTCKLLVVSSK 620 +S LV ++K Sbjct: 607 DLESEDNFLVFATK 620 >gi|296396|emb|CAA50571.1| DNA gyrase [Staphylococcus aureus] Length = 886 Score = 426 bits (1094), Expect = e-117, Method: Compositional matrix adjust. Identities = 242/614 (39%), Positives = 376/614 (61%), Gaps = 30/614 (4%) Query: 26 LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85 + E +L YA+S I RA+PD+RDG KPVHRRI++ ++E G+ ++KKSARIVG+V+GK Sbjct: 18 MRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDKSYKKSARIVGDVMGK 77 Query: 86 LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145 HPHGD S+Y+++VR+AQ F RYPL+ GQGNFG++DGD AAA RYTEARMT++ +L+ Sbjct: 78 YHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEARMTKITLELLR 137 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 +++D +DF D Y+ + EP V P++FPNLLANG SGIAVGMAT+IP HN+ E+ L+ Sbjct: 138 DINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATNIPPHNLTELINGVLS 197 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265 L NP+ISI +L+E I GPDFPT G+I+ + I +Y GRG ++R+R +EE G G Sbjct: 198 LSKNPDISIAELMEDIEGPDFPTAGLIL-GKSGIRRAYETGRGSIQMRSRAVIEERGGGR 256 Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA--EDVRIVLFPKNRSLDPD 323 IVVTEIP+QV K+R+IEKIAEL+ K+I + D+RDE++ VR+V+ + + + Sbjct: 257 QRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRVVIDVR-KDANAS 315 Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383 +++ +++ + ++T F +NM L GR P+++ L L +L H++ V+ RR+ + ++ Sbjct: 316 VILNNLYKQTPLQTSFGVNMIALVNGR-PKLINLKEALVHYLEHQKTVVRRRTQYNLRKA 374 Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVDAILNLRLRSLR 440 R IL+GL IA +IDEII+ IR D K M S RF L+E Q AIL++RLR L Sbjct: 375 KDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQRFKLSEKQAQAILDMRLRRLT 434 Query: 441 KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500 LE +I++E + LL +++++L + + E+ E+++ F RRT Sbjct: 435 GLERNKIEAEYNELLNYISELEAILADEEVLLQLVRDELTEIRDRFGDE-----RRT--- 486 Query: 501 EVSRADKATLQ-QAMIEKEPITVVISNRGWIRSLKSHSV--------DLSALHFKEGDSL 551 E+ L+ + +I +E I + +S+ +I+ L + + ++ E D + Sbjct: 487 EIQLGGFEDLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRAQNRGGRGVQGMNTLEEDFV 546 Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAFV-- 607 + T D +L + G+ Y L + LS + G + I+L +++ I T Sbjct: 547 SQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIELGNDEVISTMIAVK 606 Query: 608 -YDSTCKLLVVSSK 620 +S LV ++K Sbjct: 607 DLESEDNFLVFATK 620 >gi|224531893|ref|ZP_03672525.1| DNA gyrase, A subunit [Borrelia valaisiana VS116] gi|224511358|gb|EEF81764.1| DNA gyrase, A subunit [Borrelia valaisiana VS116] Length = 810 Score = 426 bits (1094), Expect = e-117, Method: Compositional matrix adjust. Identities = 240/606 (39%), Positives = 376/606 (62%), Gaps = 25/606 (4%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 +E + + + ++ YL YA+S I RA+PD+RDG KPVHRRI+++M EMGL AFK Sbjct: 7 KEQILNIKIEDEIKTSYLNYAMSVIVSRALPDVRDGLKPVHRRILYSMYEMGLRSDKAFK 66 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 K+ RIVG+V+GK HPHGDQS+YD+LVRLAQ F RYP+I GQGNFG+IDGD AA RYTE Sbjct: 67 KAGRIVGDVLGKYHPHGDQSIYDALVRLAQDFSLRYPVIRGQGNFGSIDGDPPAAMRYTE 126 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 A+M ++ E I++ +D++ V+F+ Y++ +EP + PS FP LL NG+SGIAVGMAT++ Sbjct: 127 AKMERITEYIVKDIDKETVNFKPNYDDSLTEPEIMPSSFPFLLVNGSSGIAVGMATNMAP 186 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN++EIC+A + ++DN SI LL+ + GPDFPT G IV + ++++++Y+ G+G +R Sbjct: 187 HNLREICDAIVYMLDNENASIFDLLKIVKGPDFPTFGEIVYN-DNLIKAYKTGKGSVVIR 245 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIV 312 AR+ +EE I+VTEIPY V KS L+ K+A L +++ L DIRDES E +RIV Sbjct: 246 ARYHIEERTEDKKAIIVTEIPYTVNKSALLMKVAFLAKEEKLEGLLDIRDESDREGIRIV 305 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 L K R DP ++M ++ ++ + F +N N+ + +P+ + L+ +L E++ HR+ ++ Sbjct: 306 LEVK-RGFDPHVIMNLLYEYTEFKKHFSIN-NLALVNGIPKQLNLEELLFEFIEHRKNII 363 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVD 429 RR F ++ + +L+GL IA NIDEII II++ K +V+ F L+E Q + Sbjct: 364 ERRVEFDLRKAKDKAHVLEGLNIALNNIDEIIKIIKSSKLAKDAKERLVANFGLSEIQAN 423 Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAE-KEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488 ++L+++L+ L LE ++++ E + LL+ K+ + LLN + I IRE E + Sbjct: 424 SVLDMKLQKLTALEIFKLEDEFNVLLSLIKDYENILLNPAR-----IINIIRE--ETINL 476 Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD--------L 540 G R T T +++KE I V+++ +G+++ L + L Sbjct: 477 GLKFGDERRTKIIYDEEVLKTSMSDLMQKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGL 536 Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNH 598 S+ +GD + IAL +T D + ++S +GK Y + A + S G+ I LI+L Sbjct: 537 SSFDLNDGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRASKGQNISELINLGD 596 Query: 599 NQDIVT 604 ++I+T Sbjct: 597 REEILT 602 >gi|282881768|ref|ZP_06290426.1| DNA gyrase, A subunit [Peptoniphilus lacrimalis 315-B] gi|281298378|gb|EFA90816.1| DNA gyrase, A subunit [Peptoniphilus lacrimalis 315-B] Length = 809 Score = 426 bits (1094), Expect = e-117, Method: Compositional matrix adjust. Identities = 256/688 (37%), Positives = 403/688 (58%), Gaps = 29/688 (4%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 E + V + + YL Y++S I RA+PD+RDG KPVHRRI++ MSE+ L G ++K Sbjct: 8 ENGIFDVDISKKMRASYLDYSMSVIVARALPDVRDGLKPVHRRILYGMSELNLVSGGSYK 67 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSAR+VG+V+GK HPHGD S+Y++ VRLAQ F RYPL+ GQGNFGNIDGD AAA RYTE Sbjct: 68 KSARLVGDVMGKYHPHGDSSIYEATVRLAQDFNMRYPLVDGQGNFGNIDGDGAAAMRYTE 127 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 +MT++AE +L+ +++D V+F ++ + EP + PS+FPNLL NG+SGIAVGMAT++P Sbjct: 128 VKMTKLAEEMLRDINKDTVEFVPNFDNDQEEPSILPSRFPNLLVNGSSGIAVGMATNMPP 187 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E+ + + IDN +ISI +L E I GPDFPTG +I+ R+ I ++Y+ GRG VR Sbjct: 188 HNMNEVIDGIVKYIDNDDISISELQEVIKGPDFPTGALIM-GRDGINKAYKTGRGKITVR 246 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE-DVRIV 312 A + E +G I++TE+PYQV KS L+ KIAEL K I + I D S + +RIV Sbjct: 247 AVAEIVEPKKGREQILITELPYQVNKSALVMKIAELAKDKIIDGISKITDSSNKRGIRIV 306 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 + K + + ++++ ++ + ++ + + L GR PQ++ L +++ ++ H+ EV+ Sbjct: 307 IDLK-KDANANVVLNKLYKETQLQITYGIINLALVNGR-PQILNLKELIRYYVDHQVEVI 364 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVD 429 RR+ F + + R I++GL IA NID +I IIR+ K V+ FSLT+ Q Sbjct: 365 TRRTRFDLNKAEARAHIVEGLFIALDNIDRVIKIIRSSKDDKEVIEKFDREFSLTQIQSQ 424 Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489 AIL++RL+ L LE ++++E D LL + ++ +L + I E+ E+K+ + Sbjct: 425 AILDMRLKRLTGLEREKLQNEYDKLLEDIKRFKEILENNHVLMELIKTELLEIKDKY--- 481 Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSVDLS 541 G R T + S +D + +I++E + + ++ G+I+ + K ++ Sbjct: 482 ---GDLRRTVIKSSESDIDI--EDIIKEEDVIITLTQMGYIKRMPEGTYKPQKRGGRGIT 536 Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEAIQLLIDLNHN 599 AL KE D +K T DR+L + GK Y L A + +GR G A+ L++L+ Sbjct: 537 ALTQKEDDFVKELFVTSTHDRLLFFTNKGKVYRLKAFEVPEAGRNAKGTAVVNLLNLDKG 596 Query: 600 QDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV 656 + I + +D LL+V+ KG E + G +K+ ++K+ V V Sbjct: 597 EKITSVINVEEFDPNYYLLMVTEKGLIKKTSNKEFKNIRQNGLIGIKLRDDDKLISVHLV 656 Query: 657 TGD-HVAVVGENRKLLIFSIDQIPEMSR 683 GD + +V + K + FS D++ + R Sbjct: 657 RGDEEIILVTKEGKSIRFSTDELRDQGR 684 >gi|297543508|ref|YP_003675810.1| DNA gyrase subunit A [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296841283|gb|ADH59799.1| DNA gyrase, A subunit [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 805 Score = 426 bits (1094), Expect = e-117, Method: Compositional matrix adjust. Identities = 239/616 (38%), Positives = 378/616 (61%), Gaps = 36/616 (5%) Query: 12 LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71 + E+ V V + +++ Y+ YA+S I RA+PD+RDG KPVHRRI++AM+E+GL Sbjct: 1 MSEDKVIPVDIEDEMKKSYIDYAMSVIVGRALPDVRDGLKPVHRRILYAMNELGLTPDKP 60 Query: 72 FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131 +KKS +VGEV+GK HPHGD +VYD+LVRLAQ F R LI G GNFG+IDGD AA RY Sbjct: 61 YKKSVAVVGEVLGKYHPHGDAAVYDTLVRLAQDFSMRETLIDGHGNFGSIDGDPPAAMRY 120 Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191 TEAR++++A +L ++++ VDF ++E EPVV PS+FPNLL NG+ GIAVGMAT+I Sbjct: 121 TEARLSKIALEMLTDINKETVDFVPNFDETLKEPVVLPSRFPNLLVNGSQGIAVGMATNI 180 Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251 P HN+ E+ + +A IDNP IS+++L++YI GPDFPTGG+I+ R+ I E+Y GRG Sbjct: 181 PPHNLGEVIDGIIAYIDNPYISVDELMKYIKGPDFPTGGVIL-GRDGIKETYETGRGKIV 239 Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311 VRA+ +EE G IV+TEIPY V K++LIEKIAEL+ K I + D+RDES + Sbjct: 240 VRAKAEIEE-HHGKTRIVITEIPYMVLKAKLIEKIAELVREKHIEGISDLRDESDRNGMK 298 Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371 V+ + ++P +++ ++M + M+ F M L G P+++ L I+++++ H+ +V Sbjct: 299 VVIELKKDVNPKVILNKLYMHTQMQQTFGAIMLALVDGE-PKILNLKQIIEKYVDHQADV 357 Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLTENQV 428 + RR+ F ++ + R IL+GL IA +IDE+I IIR+ E K ++ +F L+E Q Sbjct: 358 VTRRTKFDLRKAEERAHILEGLKIALDHIDEVINIIRSSKTEAIAKQNLMDKFGLSEKQA 417 Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488 AI+++RL L LE +++ EL L+ + +++ +L ++ I E+ E+K+ ++ Sbjct: 418 QAIVDMRLGRLTGLERQKVEDELKELMEKIKELKGILADERKVLEIIKKELLEIKDKYAT 477 Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSVDL 540 R+T V++ ++ L+ +++ E + V +++ G+I+ + K + Sbjct: 478 P-----RKTNI--VAKEEELDLED-LVQLEDVVVTMTHYGYIKRMPLDTYKAQKRGGKGI 529 Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-------------GH 586 + +E D ++ T DR+L + GK Y+L ++ +GR G Sbjct: 530 LGISTREDDFVRDIFITTTHDRLLFFTNKGKVYSLRTIDIPETGRQAKGTAIVNLIQIGQ 589 Query: 587 GEAIQLLIDLNHNQDI 602 GE + +I L +QDI Sbjct: 590 GEKVTAVIPLKKSQDI 605 >gi|312881692|ref|ZP_07741470.1| DNA gyrase, A subunit [Vibrio caribbenthicus ATCC BAA-2122] gi|309370755|gb|EFP98229.1| DNA gyrase, A subunit [Vibrio caribbenthicus ATCC BAA-2122] Length = 871 Score = 426 bits (1094), Expect = e-116, Method: Compositional matrix adjust. Identities = 273/731 (37%), Positives = 407/731 (55%), Gaps = 64/731 (8%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + V++ L YL YA+S I RA+PD+RDG KPVHRR++ AM+ +G D+ +KKSA Sbjct: 8 ITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSA 67 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG+IDGDSAAA RYTE RM Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVRM 127 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 +++A +L +D++ VD+ Y+ + P V P+K PNLL NG SGIAVGMAT+IP HN+ Sbjct: 128 SKIAHELLADLDKETVDYVLNYDGTEQIPAVLPTKVPNLLVNGASGIAVGMATNIPPHNL 187 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ L IDN +I+I++L+E+I GPDFPT +I R+ I+++Y+ GRG +R++ Sbjct: 188 TEVINGCLEYIDNEDITIDELMEFIPGPDFPTAALI-SGRKGIIDAYKTGRGKVYMRSKA 246 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFP 315 +E G IVV+EIPYQV K+RLIEKIAEL+ K++ + +RDES +D +RIV+ Sbjct: 247 DIETDKNGKETIVVSEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIEC 306 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 K R ++++ +++ + ++T F +NM L+ G+ PQ+ L +LK ++ HRREV+ RR Sbjct: 307 K-RDAVGEVVLNNLYANTQLQTTFGINMVALNNGQ-PQLFNLKEMLKCFVDHRREVVTRR 364 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK----------------PVMVS 419 + F ++ R IL+GL +A NIDEII +IR P M+ Sbjct: 365 TIFELRKARERAHILEGLALALANIDEIIELIRKAPTPAEAKLGLTARGWNLGNVAAMLE 424 Query: 420 R---------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458 R + LTE Q AIL+LRL+ L LE +I E LL E Sbjct: 425 RAGTDAARPEWLEAQFGIRDGQYFLTEQQAQAILDLRLQKLTGLEHEKILDEYKTLLDEI 484 Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518 ++ +L S ++ I E+ V++ F RRT E++ A + +I +E Sbjct: 485 AELMIILASTERLMEVIREELIAVRDGFGDE-----RRT---EITAASHDIDLEELIARE 536 Query: 519 PITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570 + V +S+ G+++ + + SA KE D ++ L A+T D IL ST G Sbjct: 537 DVVVTLSHEGYVKYQILSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILCFSTRG 596 Query: 571 KAYTLPAGNL-LSGR-GHGEAIQLLIDLNHNQDIVTAFVYDSTC--KLLVVSSKGNAFIV 626 K Y L L L+ R G+ I ++ L + I D C K + +++ Sbjct: 597 KTYRLKVYQLPLASRNARGKPIVNILPLEEGERITAILPVDQFCEDKFIFMATGDGTVKK 656 Query: 627 EESEIIANTR-KGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR- 683 AN R G + + ++ + V TGD + + + K++ FS D++ M R Sbjct: 657 TPLTQFANVRANGLIAVNLRDDDSLIGVDITTGDSDIMLFSKAGKVVRFSEDKVRAMGRT 716 Query: 684 GKGVRLQSYKD 694 GVR D Sbjct: 717 AAGVRGMKLND 727 >gi|1346238|sp|P20831|GYRA_STAAU RecName: Full=DNA gyrase subunit A Length = 889 Score = 426 bits (1094), Expect = e-116, Method: Compositional matrix adjust. Identities = 253/670 (37%), Positives = 400/670 (59%), Gaps = 37/670 (5%) Query: 26 LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85 + E +L YA+S I RA+PD+RDG KPVHRRI++ ++E G+ ++KKSARIVG+V+GK Sbjct: 18 MRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDKSYKKSARIVGDVMGK 77 Query: 86 LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145 HPHGD S+Y+++VR+AQ F RYPL+ GQGNFG++DGD AAA RYTEARMT++ +L+ Sbjct: 78 YHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEARMTKITLELLR 137 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 +++D +DF D Y+ + EP V P++FPNLLANG SGIAVGMAT+IP HN+ E+ L+ Sbjct: 138 DINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATNIPPHNLTELINGVLS 197 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265 L NP+ISI +L+E I GPDFPT G+I+ + I +Y GRG ++R+R +EE G G Sbjct: 198 LSKNPDISIAELMEDIEGPDFPTAGLIL-GKSGIRRAYETGRGSIQMRSRAVIEERGGGR 256 Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA--EDVRIVLFPKNRSLDPD 323 IVVTEIP+QV K+R+IEKIAEL+ K+I + D+RDE++ VR+V+ + + + Sbjct: 257 QRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRVVIDVR-KDANAS 315 Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383 +++ +++ + ++T F +NM L GR P+++ L L +L H++ V+ RR+ + ++ Sbjct: 316 VILNNLYKQTPLQTSFGVNMIALVNGR-PKLINLKEALVHYLEHQKTVVRRRTQYNLRKA 374 Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVDAILNLRLRSLR 440 R IL+GL IA +IDEII+ IR D K M S RF L+E Q AIL++RLR L Sbjct: 375 KDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQRFKLSEKQAQAILDMRLRRLT 434 Query: 441 KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500 LE +I++E + LL +++++L + + E+ E+++ F RRT Sbjct: 435 GLERDKIEAEYNELLNYISELEAILADEEVLLQLVRDELTEIRDRFGDD-----RRT--- 486 Query: 501 EVSRADKATLQ-QAMIEKEPITVVISNRGWIRSLKSHSV--------DLSALHFKEGDSL 551 E+ L+ + +I +E I + +S+ +I+ L + + ++ E D + Sbjct: 487 EIQLGGFEDLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRAQNRGGRGVQGMNTLEEDFV 546 Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAFV-- 607 + T D +L + G+ Y L + LS + G + I+L +++ I T Sbjct: 547 SQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIELENDEVISTMIAVK 606 Query: 608 -YDSTCKLLVVSSKGNAFIVEESEIIAN----TRKGKTFLKVSSEEKMKLVVKVTGDHVA 662 +S LV ++K +V+ S ++N R GK + ++++ V +G Sbjct: 607 DLESEDNFLVFATKRG--VVKRS-ALSNFSRINRNGKIAISFREDDELIAVRLTSGQEDI 663 Query: 663 VVGENRKLLI 672 ++G + LI Sbjct: 664 LIGTSHASLI 673 >gi|253733833|ref|ZP_04867998.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus TCH130] gi|253728136|gb|EES96865.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus TCH130] gi|329732398|gb|EGG68748.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus 21193] Length = 889 Score = 426 bits (1094), Expect = e-116, Method: Compositional matrix adjust. Identities = 242/614 (39%), Positives = 376/614 (61%), Gaps = 30/614 (4%) Query: 26 LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85 + E +L YA+S I RA+PD+RDG KPVHRRI++ ++E G+ ++KKSARIVG+V+GK Sbjct: 18 MRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDKSYKKSARIVGDVMGK 77 Query: 86 LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145 HPHGD S+Y+++VR+AQ F RYPL+ GQGNFG++DGD AAA RYTEARMT++ +L+ Sbjct: 78 YHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEARMTKITLELLR 137 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 +++D +DF D Y+ + EP V P++FPNLLANG SGIAVGMAT+IP HN+ E+ L+ Sbjct: 138 DINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATNIPPHNLTELINGVLS 197 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265 L NP+ISI +L+E I GPDFPT G+I+ + I +Y GRG ++R+R +EE G G Sbjct: 198 LSKNPDISIAELMEDIEGPDFPTAGLIL-GKSGIRRAYETGRGSIQMRSRAVIEERGGGR 256 Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA--EDVRIVLFPKNRSLDPD 323 IVVTEIP+QV K+R+IEKIAEL+ K+I + D+RDE++ VR+V+ + + + Sbjct: 257 QRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRVVIDVR-KDANAS 315 Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383 +++ +++ + ++T F +NM L GR P+++ L L +L H++ V+ RR+ + ++ Sbjct: 316 VILNNLYKQTPLQTSFGVNMIALVNGR-PKLINLKEALVHYLEHQKTVVRRRTQYNLRKA 374 Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVDAILNLRLRSLR 440 R IL+GL IA +IDEII+ IR D K M S RF L+E Q AIL++RLR L Sbjct: 375 KDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQRFKLSEKQAQAILDMRLRRLT 434 Query: 441 KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500 LE +I++E + LL +++++L + + E+ E+++ F RRT Sbjct: 435 GLERDKIEAEYNELLNYISELEAILADEEVLLQLVRDELTEIRDRFGDD-----RRT--- 486 Query: 501 EVSRADKATLQ-QAMIEKEPITVVISNRGWIRSLKSHSV--------DLSALHFKEGDSL 551 E+ L+ + +I +E I + +S+ +I+ L + + ++ E D + Sbjct: 487 EIQLGGFEDLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRAQNRGGRGVQGMNTLEEDFV 546 Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAFV-- 607 + T D +L + G+ Y L + LS + G + I+L +++ I T Sbjct: 547 SQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIELENDEVISTMIAVK 606 Query: 608 -YDSTCKLLVVSSK 620 +S LV ++K Sbjct: 607 DLESEDNFLVFATK 620 >gi|242372597|ref|ZP_04818171.1| DNA gyrase subunit A [Staphylococcus epidermidis M23864:W1] gi|242349652|gb|EES41253.1| DNA gyrase subunit A [Staphylococcus epidermidis M23864:W1] Length = 891 Score = 426 bits (1094), Expect = e-116, Method: Compositional matrix adjust. Identities = 253/668 (37%), Positives = 397/668 (59%), Gaps = 33/668 (4%) Query: 26 LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85 + E +L YA+S I RA+PD+RDG KPVHRRI++ ++E G+ +KKSARIVG+V+GK Sbjct: 18 MRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKSARIVGDVMGK 77 Query: 86 LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145 HPHGD S+Y+++VR+AQ F RYPL+ GQGNFG++DGD AAA RYTEARMT++ +L+ Sbjct: 78 YHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEARMTKITLELLR 137 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 +++D +DF D Y+ + EP V P++FPNLL NG +GIAVGMAT+IP HN+ E+ + L+ Sbjct: 138 DINKDTIDFIDNYDGNEREPSVLPARFPNLLVNGAAGIAVGMATNIPPHNLTEVIDGVLS 197 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265 L NP+I+I +L+E I GPDFPT G+I+ + I +Y GRG ++R+R +EE G G Sbjct: 198 LSKNPDITINELMEDIQGPDFPTAGLIL-GKSGIRRAYETGRGSIQMRSRAEIEERGGGR 256 Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA--EDVRIVLFPKNRSLDPD 323 IVVTEIP+QV K+R+IEKIAEL+ K+I + D+RDE++ VRIV+ + + + Sbjct: 257 QRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRIVIDVR-KDANAS 315 Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383 +++ +++ + +++ F +NM L GR P+++ L L +L H++ V+ RR+ + ++ Sbjct: 316 VILNNLYKQTPLQSSFGVNMIALVNGR-PKLINLKEALIHYLEHQKVVVRRRTEYNLRKA 374 Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVDAILNLRLRSLR 440 R IL+GL IA +IDEII IR + K M S RF L+E Q AIL++RLR L Sbjct: 375 KDRAHILEGLRIALDHIDEIITTIRESETDKIAMESLQERFKLSERQAQAILDMRLRRLT 434 Query: 441 KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500 LE +I+SE + LL ++++ +L + + E+ E+KE F G R T Sbjct: 435 GLERDKIESEYNELLEYIKELEEILADEEVLLQLVRDELSEIKERF------GDERRTEI 488 Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DLSALHFKEGDSLK 552 ++ D + +I +E I + +S+ +I+ L + + ++ E D + Sbjct: 489 QLGGLDDLE-DEDLIPEEQIVITLSHNNYIKRLPVSTYRSQNRGGRGVQGMNTLEEDFVS 547 Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAFV--- 607 + T D +L + G+ Y L + LS + G I I+L +++ I T Sbjct: 548 QLVTLSTHDNVLFFTNKGRVYKLKGYEVPELSRQSKGIPIVNAIELENDETISTMIAVRN 607 Query: 608 YDSTCKLLVVSSKGNAFIVEESEIIANTR---KGKTFLKVSSEEKMKLVVKVTGDHVAVV 664 +S LV ++K IV+ S + +R GK + ++++ V TG+ ++ Sbjct: 608 LESEDDYLVFATKRG--IVKRSALSNFSRINKNGKIAISFKEDDELIAVRLTTGNEDILI 665 Query: 665 GENRKLLI 672 G + LI Sbjct: 666 GTSHASLI 673 >gi|254521504|ref|ZP_05133559.1| DNA gyrase, A subunit [Stenotrophomonas sp. SKA14] gi|219719095|gb|EED37620.1| DNA gyrase, A subunit [Stenotrophomonas sp. SKA14] Length = 904 Score = 426 bits (1094), Expect = e-116, Method: Compositional matrix adjust. Identities = 285/768 (37%), Positives = 414/768 (53%), Gaps = 90/768 (11%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 V+L + + YL YA+S I RA+PD RDG KPVHRR++ AM+E+ + KSARIV Sbjct: 11 VNLEDEMRKSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMNELNAHSNKPYFKSARIV 70 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGDQSVYD+LVRLAQPF RY L+ GQGNFG+IDGDSAAA RYTEARM+++ Sbjct: 71 GDVIGKYHPHGDQSVYDTLVRLAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEARMSRL 130 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A ++ +D++ VDF+ Y+E++ EP V P++FPNLL NG++GIAVGMAT+IP HN+ E Sbjct: 131 AHELMADIDKETVDFQPNYDEKELEPTVMPTRFPNLLVNGSAGIAVGMATNIPPHNLSES 190 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 A +ALIDNP+I ++ L+EYI GPDFPT GII IV YR GRG R+RA+ +E Sbjct: 191 INACIALIDNPDIDVDGLMEYIPGPDFPTAGII-NGTAGIVAGYRTGRGRVRIRAKADIE 249 Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319 G I+VTEIPYQV K+RLIEKIAEL+ K+I + ++RDES +D + R Sbjct: 250 VADNGRESIIVTEIPYQVNKARLIEKIAELVKEKKIEGISELRDESDKDGMRIYIEIKRG 309 Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379 ++++ +++ + ME+ F +NM L GR PQ+M L +L+ ++ HRREV+ RR+ F Sbjct: 310 ESAEVVLNNLYQQTQMESVFGINMVALVDGR-PQLMNLKQMLEAFVRHRREVVTRRTVFE 368 Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAII-------------------------------- 407 ++ R +L+GL +A NIDE+I +I Sbjct: 369 LRKARARAHVLEGLTVALANIDEMIELIKTSPNPNEARERMLARVWEPGLVGAMLGAAGA 428 Query: 408 ---RNEDKPKPV--MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKID 462 R ED PK V + + LTE Q IL +RL L LE+ ++ E LL E I Sbjct: 429 EASRPEDLPKGVGLIEGGYQLTEIQATQILEMRLHRLTGLEQDRLTDEYKQLL---EVIA 485 Query: 463 SLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITV 522 L++ + +++ IRE E+ + + G R T S D L +I E + V Sbjct: 486 GLIHI-LEDPDRLLQVIRE--ELVNVKAEFGDERRTEIRHSEEDLDILD--LIAPEDVVV 540 Query: 523 VISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT 574 +S+ G+++ + + SA KE D ++ +T D +L ++ GK + Sbjct: 541 TVSHAGYVKRQPVSVYRAQRRGGRGRSAAATKEEDFIEQLWLVNTHDTLLTFTSSGKVFW 600 Query: 575 LP------AGNLLSGRG--------HGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSK 620 LP AG+ GR GE +Q ++ + D FV+ +T V + Sbjct: 601 LPVYQLPEAGSNARGRPIINWIPLEPGERVQAVLPVREYAD--GQFVFFATKNGTVKKTP 658 Query: 621 GN--AFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQI 678 AF + +I N +G + V + + + + N K + F D++ Sbjct: 659 LGEFAFRLARGKIAINLDEGDALVGVGRTDGER--------DILLFASNGKTVRFGEDKV 710 Query: 679 PEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSEND 725 M R GVR G +V+ + E SAG + +E+D Sbjct: 711 RSMGRTATGVRGIKMPAG--EEVVSLIVAE------SAGGIEDENEDD 750 >gi|149914919|ref|ZP_01903448.1| DNA gyrase, A subunit [Roseobacter sp. AzwK-3b] gi|149811107|gb|EDM70944.1| DNA gyrase, A subunit [Roseobacter sp. AzwK-3b] Length = 908 Score = 426 bits (1094), Expect = e-116, Method: Compositional matrix adjust. Identities = 247/611 (40%), Positives = 365/611 (59%), Gaps = 51/611 (8%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 VS+ ++ YL YA+S I RAIPDLRDG KPVHRRI++AM E G ++KSAR V Sbjct: 16 VSIEDEMKTSYLDYAMSVIVSRAIPDLRDGLKPVHRRILYAMHEGGNTHDKPYRKSARAV 75 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+V+GK HPHGD ++YD+LVR+AQ F PL+ GQGNFG++DGD+AAA RYTE RM + Sbjct: 76 GDVMGKYHPHGDSAIYDALVRMAQDFSMSLPLLDGQGNFGSMDGDNAAAMRYTEVRMDKP 135 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A +L +++D VDF+D Y+ +D EP V P++FPN+L NG GIAVGMAT+IP HN+ E+ Sbjct: 136 AAALLADIEKDTVDFQDNYDGKDLEPTVLPARFPNMLVNGAGGIAVGMATNIPPHNLGEV 195 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 C+A LALI+NP++ E L+EYI GPDFPTGGI++ R ++Y GRG +R++ +E Sbjct: 196 CDATLALIENPDLGSEDLIEYIPGPDFPTGGIML-GRSGARKAYIEGRGSVVIRSKTRIE 254 Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFPKNR 318 E+ + + IV+ EIPYQV K+ +IEKIAE + KRI + ++DES VR+V+ K R Sbjct: 255 EIRKDRYAIVIDEIPYQVNKAAMIEKIAETVREKRIEGIAHVQDESDRHGVRVVVELK-R 313 Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378 ++++ +F + M+T F NM L+ GR P+ + L G L ++ R EV+ RR++F Sbjct: 314 DATAEVVLNQLFRFTPMQTYFGCNMLALNGGR-PEQLTLHGFLSAFITFREEVVARRTAF 372 Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSR--------------- 420 ++ R +L GL +A N+DE++A IR + + + +++R Sbjct: 373 ELRKARDRSHVLCGLAVAVSNVDEVVATIRASADAAEARHKLMTRRWPAGDILEYIALID 432 Query: 421 -----------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGK 469 ++L+E Q AIL+LRL+ L +L ++ EL L A+ ++ ++L S + Sbjct: 433 DPTHTANDDGTYNLSETQARAILDLRLQRLTQLGVKEVTDELQELAAKIKEYLAILASRE 492 Query: 470 QQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW 529 + I+ E+REVKE FS RRT + S + +IE+E + V ++ G+ Sbjct: 493 RIMEIISTELREVKEQFSVP-----RRTQIVDWS---GDMDDEDLIEREDMVVTVTQGGY 544 Query: 530 I--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL- 580 I R+ K LS + KE D + A+T ++L +TDG Y L L Sbjct: 545 IKRTALADFRAQKRGGKGLSGMATKEEDVVTTLFVANTHTQLLFFTTDGMVYKLKTWRLP 604 Query: 581 LSGR-GHGEAI 590 L GR G+AI Sbjct: 605 LGGRTSKGKAI 615 >gi|332971210|gb|EGK10173.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Desmospora sp. 8437] Length = 813 Score = 426 bits (1094), Expect = e-116, Method: Compositional matrix adjust. Identities = 226/602 (37%), Positives = 374/602 (62%), Gaps = 23/602 (3%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 E+ + +++ + +L YA+S I RA+PD+RDG KPVHRRI++ M E+G+ ++ Sbjct: 4 EQRINEINISQEMRSSFLDYAMSVIVSRALPDVRDGLKPVHRRILYTMHELGMTSDKPYR 63 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSA +VG V+ HPHGD +VYD++VR+AQ F RY L+ G GNFG++DGDS AA RYTE Sbjct: 64 KSANVVGNVLASYHPHGDGAVYDTMVRMAQDFSYRYMLVDGHGNFGSVDGDSPAAMRYTE 123 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 ARM + +L+ ++++ +DF Y+ EPVV P++FPNLL NG++GIAVGMAT+IP Sbjct: 124 ARMAPITRELLRDIEKETIDFTPNYDGRLEEPVVLPARFPNLLVNGSAGIAVGMATNIPP 183 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E+ + LA+I NPEI+I++L+E+I GPDFPT G+I+ R+ I ++YR GRG +++ Sbjct: 184 HNLTEVIDGLLAMIQNPEITIDELMEHIKGPDFPTAGLIL-GRDGIKKAYRTGRGSIKMQ 242 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313 A+ +EE G IVV E+PYQV K++L+EKIAEL+ K+I + D+RDES + V+ Sbjct: 243 AKTRIEEANNGKMRIVVEELPYQVNKAKLVEKIAELVRDKKIDGITDLRDESDRNGMRVI 302 Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373 R ++P +L+ +++ ++++T F +NM L G+ P V+ L +L +L H+ EV+ Sbjct: 303 IELRRDVNPKVLLNNLYKQTNLQTSFGVNMLALVDGK-PLVLNLKQVLHHYLEHQVEVIR 361 Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDA 430 RR+ F ++ + R IL+GL IA +IDE+I +IR + + ++ +F L++ Q A Sbjct: 362 RRTQFDLRKAEERAHILEGLRIALDHIDEVIELIRGSRTTQEARDGLMEKFGLSDKQAQA 421 Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490 IL++RL+ L LE +I++E D LL ++ ++L S ++ + E+ EV++ + Sbjct: 422 ILDMRLQRLTGLEREKIETEYDELLKTIAELKAILASEEKIRGVVRDELTEVRDKY---- 477 Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSA 542 G R + ++ D A + +I ++ +T+++++RG+I R+ + +S Sbjct: 478 --GDERRSRIMLNTGDIA--DEDLIPEDEVTILMTHRGYIKRMLLSGYRAQRRGGRGVSG 533 Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQ 600 + +E D ++ ++ + +L S GK Y + A + LS G I LI ++ + Sbjct: 534 MGTREDDFVQHLFVTNSHNYLLFFSNKGKVYRMKAYEVPELSRTARGTPIINLIQIDQGE 593 Query: 601 DI 602 I Sbjct: 594 YI 595 >gi|317180420|dbj|BAJ58206.1| DNA gyrase subunit A [Helicobacter pylori F32] Length = 828 Score = 426 bits (1094), Expect = e-116, Method: Compositional matrix adjust. Identities = 246/614 (40%), Positives = 379/614 (61%), Gaps = 42/614 (6%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 +N+ V + ++EE YLAY++S I RA+PD RDG KPVHRRI++AM E+GL A+KK Sbjct: 10 KNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHELGLTSKVAYKK 69 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 SARIVG+VIGK HPHGD +VYD+LVR+AQ F R L+ GQGNFG+IDGD+AAA RYTEA Sbjct: 70 SARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDNAAAMRYTEA 129 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 RMT+ +E IL+ +D+D +DF Y++ EP + PS+ PNLL NG +GIAVGMATSIP H Sbjct: 130 RMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGIAVGMATSIPPH 189 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 + EI +A + +++NP ++++LE++ GPDFPTGGII + I+E+Y+ GRG +VRA Sbjct: 190 RIDEIIDALVHVLENPNAGLDEILEFVKGPDFPTGGIIY-GKAGIIEAYKTGRGRVKVRA 248 Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVL 313 + VE+ + IV+ E+P+Q K++L+E+I++L K+I + ++RDES E +R+V+ Sbjct: 249 KVHVEKT-KNKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRDESDREGIRVVI 307 Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373 K ++ ++++ ++ L+ MET F + + + + P++ L +L+ +L HR+ ++ Sbjct: 308 ELKRDAM-SEIVLNHLYKLTTMETTFSIILLAI-YNKEPKIFTLLELLRLFLNHRKTIII 365 Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVDA 430 RR+ F ++ R IL+G LIA NIDEI+ +I+ P K ++ RF+L+E Q A Sbjct: 366 RRTIFELEKAKARAHILEGYLIALDNIDEIVRLIKTSQSPEAAKNALMERFTLSEIQSKA 425 Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490 IL +RL+ L LE +IK E NLL + ++ +L S + + E+ EVKE FS Sbjct: 426 ILEMRLQRLTGLERDKIKEEYQNLLELIDDLNGILKSEDRLNEVVKTELLEVKEQFSSP- 484 Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK---- 546 RRT E+ A + + +I EP+ V +S +G+++ VDL A + Sbjct: 485 ----RRT---EIQEAYENIDIEDLIANEPMVVSMSYKGYVK-----RVDLKAYERQNRGG 532 Query: 547 ---------EGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQL 592 E D ++ A+T D +L ++ G K Y +P + ++ G+AI Sbjct: 533 KGKLSGNTYEDDFIENFFVANTHDILLFITNKGQLYHLKVYKIPEASRIA---MGKAIVN 589 Query: 593 LIDLNHNQDIVTAF 606 LI L ++ I+ Sbjct: 590 LISLAPDEKIMATL 603 >gi|295402118|ref|ZP_06812077.1| DNA gyrase, A subunit [Geobacillus thermoglucosidasius C56-YS93] gi|294975801|gb|EFG51420.1| DNA gyrase, A subunit [Geobacillus thermoglucosidasius C56-YS93] Length = 824 Score = 426 bits (1094), Expect = e-116, Method: Compositional matrix adjust. Identities = 224/568 (39%), Positives = 358/568 (63%), Gaps = 20/568 (3%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 ++ V++ + +L YA+S I RA+PD+RDG KPVHRRI++AM ++G+ +KKSA Sbjct: 9 IREVNISQEMRSSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMHDLGMTADKPYKKSA 68 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 RIVGEVIGK HPHGD +VYD++VR+AQ F RY L+ G GNFG+IDGD+AAA RYTEARM Sbjct: 69 RIVGEVIGKYHPHGDAAVYDTMVRMAQDFNYRYMLVDGHGNFGSIDGDAAAAMRYTEARM 128 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 +++A +L+ +++D +D++D Y+ + EPVV PS+FPNLL NG+SGIAVGMAT+IP H + Sbjct: 129 SKIAMEMLRDINKDTIDYQDNYDGSEKEPVVLPSRFPNLLVNGSSGIAVGMATNIPPHQL 188 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ +A LAL NP++++ L+E+I GPDFPT G I+ R I ++Y GRG +RA+ Sbjct: 189 GEVIDAILALSKNPDMTVADLMEHIPGPDFPTAGQII-GRSGIRKAYETGRGSITLRAKA 247 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316 +E+ G I+V E+PYQV K++LIE+IAEL+ K+I + D+RDES ++ Sbjct: 248 EIEQQPNGKEMIIVRELPYQVNKAKLIERIAELVREKKIDGITDLRDESDRSGMRIVIEV 307 Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376 + + +++ +++ + M+T F +NM L G+ P+V+ L L+ +L H++ V+ RR+ Sbjct: 308 RKDANAKVILNNLYKHTAMQTSFGINMLALVDGQ-PKVLNLKECLQHYLDHQKTVIRRRT 366 Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAILN 433 ++ ++ + R IL+GL IA ++DE+I +IR+ + ++ +FSL+E Q AIL+ Sbjct: 367 AYELKKAEARAHILEGLRIALDHLDEVINLIRSSKTTEIAREGLMQQFSLSERQAQAILD 426 Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493 +RL+ L LE +I+ E L+ ++ ++L ++ I E+ E+KE F+ Sbjct: 427 MRLQRLTGLEREKIEQEYQELIRLIAELKAILADEEKVLQIIRDELTEIKERFNDE---- 482 Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSVDLSALHF 545 RRT V+ + + +I +E I + ++++G+I+ L K + +H Sbjct: 483 -RRTEI--VAGGAEEFEDEDLIPRENIVITLTHKGYIKRLPVSTYKSQKRGGRGVQGMHT 539 Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAY 573 E D ++ L T D +L + GK Y Sbjct: 540 NEDDFVEHLLITSTHDTVLFFTNKGKVY 567 >gi|206901654|ref|YP_002250993.1| DNA gyrase, A subunit [Dictyoglomus thermophilum H-6-12] gi|206740757|gb|ACI19815.1| DNA gyrase, A subunit [Dictyoglomus thermophilum H-6-12] Length = 808 Score = 426 bits (1094), Expect = e-116, Method: Compositional matrix adjust. Identities = 263/755 (34%), Positives = 427/755 (56%), Gaps = 38/755 (5%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 V L +E YL YA+S I RA+PD RDG KPV RRII++M E G+ ++KSA +V Sbjct: 10 VGLEREMESSYLDYAMSVIVGRALPDARDGLKPVQRRIIYSMYESGILHNRPYRKSAHVV 69 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G V+G+ HPHGD +VY++LVR+AQ F RYPLI G GNFG+IDGD AA RYTE R++ + Sbjct: 70 GNVLGRYHPHGDAAVYEALVRMAQDFSFRYPLIDGHGNFGSIDGDEPAAMRYTEVRLSPI 129 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A ++ +++D VDF Y+ EPVV P+K P LL NG+SGIAVGMAT+IP HN+ E+ Sbjct: 130 ASELIADIEKDVVDFIPNYDNSLKEPVVLPTKIPQLLMNGSSGIAVGMATNIPPHNLGEL 189 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 +A L LI+ PE IE+LL +I GPDFPTGG I+ ++ I ESY G+G VR + +E Sbjct: 190 IDALLYLIEKPEAEIEELLNFIKGPDFPTGGTIIGTK-GIRESYLTGKGKLIVRGKIAIE 248 Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFPKNR 318 E +G I++ EIPY V KS L+ +IAEL+ ++I ++D+RDES +R+V+ K + Sbjct: 249 ETKKGDKNIIIKEIPYMVNKSNLLTQIAELVQERKITGIKDLRDESDRHGIRVVIELK-K 307 Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378 +DP +++ ++ + ++T F + M + G+ P+V L +L +L HR+ V+ RR+ + Sbjct: 308 DVDPQIVINQLYKHTQLQTTFGVIMLAILDGQ-PKVFNLKELLNIFLEHRKNVVTRRTKY 366 Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAILNLR 435 ++ R IL+GLLIA ++DE+IAIIR N +K + ++ +F LT+ Q AIL++R Sbjct: 367 DLEKARARAHILEGLLIALDHLDEVIAIIRQSENAEKAREKLMLKFKLTQIQAQAILDMR 426 Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495 L L +LE+ ++ E++ + +++ +L K+ W I+ E++E+K ++ R Sbjct: 427 LHQLTRLEKEKLLEEMNQIKENIAQLEKILKDEKELWRVISEELKEIKRKYADE-----R 481 Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD--------LSALHFKE 547 +T E ++D + ++ P V I+ +I+ L + L+ L Sbjct: 482 KTLIEEEEKSDITI--EDILPDNPEVVCITQDSYIKRLPLSTYQLQRRGGKGLNTLANNN 539 Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQ---DI 602 D + + T + L S GK Y L L S + G I+ +++++++ +I Sbjct: 540 DDVITSFVVTSTRSTLFLFSNKGKVYALKTYELDETSRQSKGVPIKEYLNIDNDEKITEI 599 Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEI--IANTRKGKTF-LKVSSEEKMKLVVKVTG- 658 ++ + V+SKG IV+++ I N RK + +K+ E+ + V +G Sbjct: 600 ISVNEFPKNLYFFFVTSKG---IVKKTSIEEFENVRKSGIYAIKLGEEDYLVNVFLTSGN 656 Query: 659 DHVAVVGENRKLLIFSIDQIPEMSR-GKGV-RLQSYKDGGISDVICFKICEGLTWIDSAG 716 D + + + + F + EM R +GV ++ KD + + FK + + + + G Sbjct: 657 DEIMIFTKKGNAIRFHEKDVREMGRIAQGVIGIKLRKDDSVIGGVIFKESKQIVLVTTYG 716 Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751 + N+ + KRGG+G K P++G + Sbjct: 717 IGKRVNPNEF--SVQKRGGMGVRAIKITPKTGDLV 749 >gi|253730405|ref|ZP_04864570.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253725885|gb|EES94614.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus USA300_TCH959] Length = 884 Score = 426 bits (1094), Expect = e-116, Method: Compositional matrix adjust. Identities = 253/670 (37%), Positives = 400/670 (59%), Gaps = 37/670 (5%) Query: 26 LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85 + E +L YA+S I RA+PD+RDG KPVHRRI++ ++E G+ ++KKSARIVG+V+GK Sbjct: 18 MRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDKSYKKSARIVGDVMGK 77 Query: 86 LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145 HPHGD S+Y+++VR+AQ F RYPL+ GQGNFG++DGD AAA RYTEARMT++ +L+ Sbjct: 78 YHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEARMTKITLELLR 137 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 +++D +DF D Y+ + EP V P++FPNLLANG SGIAVGMAT+IP HN+ E+ L+ Sbjct: 138 DINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATNIPPHNLTELINGVLS 197 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265 L NP+ISI +L+E I GPDFPT G+I+ + I +Y GRG ++R+R +EE G G Sbjct: 198 LSKNPDISIAELMEDIEGPDFPTAGLIL-GKSGIRRAYETGRGSIQMRSRAVIEERGGGR 256 Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA--EDVRIVLFPKNRSLDPD 323 IVVTEIP+QV K+R+IEKIAEL+ K+I + D+RDE++ VR+V+ + + + Sbjct: 257 QRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRVVIDVR-KDANAS 315 Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383 +++ +++ + ++T F +NM L GR P+++ L L +L H++ V+ RR+ + ++ Sbjct: 316 VILNNLYKQTPLQTSFGVNMIALVNGR-PKLINLKEALVHYLEHQKTVVRRRTQYNLRKA 374 Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVDAILNLRLRSLR 440 R IL+GL IA +IDEII+ IR D K M S RF L+E Q AIL++RLR L Sbjct: 375 KDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQRFKLSEKQAQAILDMRLRRLT 434 Query: 441 KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500 LE +I++E + LL +++++L + + E+ E+++ F RRT Sbjct: 435 GLERDKIEAEYNELLNYISELEAILADEEVLLQLVRDELTEIRDRFGDD-----RRT--- 486 Query: 501 EVSRADKATLQ-QAMIEKEPITVVISNRGWIRSLKSHSV--------DLSALHFKEGDSL 551 E+ L+ + +I +E I + +S+ +I+ L + + ++ E D + Sbjct: 487 EIQLGGFEDLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRAQNRGGRGVQGMNTLEEDFV 546 Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAFV-- 607 + T D +L + G+ Y L + LS + G + I+L +++ I T Sbjct: 547 SQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIELENDEVISTMIAVK 606 Query: 608 -YDSTCKLLVVSSKGNAFIVEESEIIAN----TRKGKTFLKVSSEEKMKLVVKVTGDHVA 662 +S LV ++K +V+ S ++N R GK + ++++ V +G Sbjct: 607 DLESEDNFLVFATKRG--VVKRS-ALSNFSRINRNGKIAISFREDDELIAVRLTSGQEDI 663 Query: 663 VVGENRKLLI 672 ++G + LI Sbjct: 664 LIGTSHASLI 673 >gi|149916749|ref|ZP_01905251.1| type II DNA topoisomerase, A subunit [Plesiocystis pacifica SIR-1] gi|149822466|gb|EDM81855.1| type II DNA topoisomerase, A subunit [Plesiocystis pacifica SIR-1] Length = 832 Score = 426 bits (1094), Expect = e-116, Method: Compositional matrix adjust. Identities = 255/716 (35%), Positives = 409/716 (57%), Gaps = 55/716 (7%) Query: 29 RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE-MGLDFGAAFKKSARIVGEVIGKLH 87 +YL YALS I RAIPD+RDG KPV RRI+ M E + L F A +KSA++VG+VIGK H Sbjct: 56 KYLNYALSVITSRAIPDVRDGLKPVQRRILFTMFEDLRLTFDARHRKSAKVVGDVIGKYH 115 Query: 88 PHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGV 147 PHGD +VYD++VR+AQ F R PL+ GQGNFG+IDGDSAAAYRYTEA+++++A ++ + Sbjct: 116 PHGDSAVYDAMVRMAQAFNMRMPLVDGQGNFGSIDGDSAAAYRYTEAKLSKLAAELITEI 175 Query: 148 DEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALI 207 D V+FR TY+ EP+V P++FP LL NGT+GIAVGMATSIP HN+ E+ A L LI Sbjct: 176 KRDTVEFRPTYDGTGREPIVLPARFPQLLVNGTTGIAVGMATSIPPHNLGEVIRACLLLI 235 Query: 208 DNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEE-----VG 262 D P+ S+ K++ I GPDFPTGG +V R+ + +Y G+G F++R W +E G Sbjct: 236 DEPDASVAKVMGKIKGPDFPTGGQLVAERKELRAAYETGKGTFKLRGSWKYQEGKETKQG 295 Query: 263 RGSWC----IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF--PK 316 R +V+TEIP+ VQKS L+E+I ++I++K++P++ ++D S ED+R+ L PK Sbjct: 296 RKRVVENPRVVITEIPWGVQKSSLVEEIGQVILSKKLPVVIGVQDLSTEDIRVELELDPK 355 Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQV-----MPLDGILKEWLAHRREV 371 + +DP+L+M +F + ++T L++ VL+ P+V + L IL+ +L R + Sbjct: 356 S-EVDPELVMAYLFKHTRLQTTVKLDLTVLTPTDNPEVSAPARLDLKSILRYFLDFRLQT 414 Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAII-RNEDKPKPV--MVSRFSLTENQV 428 + RR + ++ ++ R+ IL+G + + ++D+ I II R+E K ++ F L++ Q Sbjct: 415 VRRRFEYELRKLEERIHILEGFELIFNDLDKAIRIIRRSEGKADAAKKLIKAFELSDIQA 474 Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488 DA+L RL L KLE +I+ EL + + ++I ++L S K+ W + E++ + Sbjct: 475 DAVLETRLYKLAKLEILKIEEELADKRKQAKRIRAILKSKKKLWGVVRDELQAL------ 528 Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548 S + RR T + + ++ I +E V+++ GWI+ + +V+L +EG Sbjct: 529 SGEYADRRRTRIDAEDLTEEFSAESFIVEEDAMVLVTRDGWIK--RQRNVNLETTRMREG 586 Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608 D+ + T D ++L S G AY + ++ + GHG +Q L + +++ Sbjct: 587 DAPLALVGGSTRDCVVLFSNRGSAYVIRVNDVPASSGHGTPVQKLFKFKDGEKVISVTTT 646 Query: 609 DSTCKLLVVSSK----GNAFIVEESEIIA------------------NTRKGKTFLKVSS 646 D L ++ G F +A +TR G+ + K + Sbjct: 647 DPRFMLEFAEAEKPELGEEFEDPYPHFLAVTRGGMALRFTLWPHREPSTRSGRLYGKTKA 706 Query: 647 EEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMS-RGKGVRL--QSYKDGGIS 698 ++ V +V G D V + + KLL ++ + ++ G+GV L KDG ++ Sbjct: 707 GDEFVEVFQVWGDDDVCALTQKGKLLCCNVMDVNLLAGPGRGVTLIKTDDKDGVVA 762 >gi|282902637|ref|ZP_06310530.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus C160] gi|282918074|ref|ZP_06325824.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus D139] gi|282921296|ref|ZP_06329014.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus C427] gi|283767796|ref|ZP_06340711.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus H19] gi|282315711|gb|EFB46095.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus C427] gi|282318359|gb|EFB48719.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus D139] gi|282597096|gb|EFC02055.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus C160] gi|283461675|gb|EFC08759.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus H19] gi|298693328|gb|ADI96550.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus ED133] Length = 886 Score = 425 bits (1093), Expect = e-116, Method: Compositional matrix adjust. Identities = 242/614 (39%), Positives = 376/614 (61%), Gaps = 30/614 (4%) Query: 26 LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85 + E +L YA+S I RA+PD+RDG KPVHRRI++ ++E G+ ++KKSARIVG+V+GK Sbjct: 18 MRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDKSYKKSARIVGDVMGK 77 Query: 86 LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145 HPHGD S+Y+++VR+AQ F RYPL+ GQGNFG++DGD AAA RYTEARMT++ +L+ Sbjct: 78 YHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEARMTKITLELLR 137 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 +++D +DF D Y+ + EP V P++FPNLLANG SGIAVGMAT+IP HN+ E+ L+ Sbjct: 138 DINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATNIPPHNLTELINGVLS 197 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265 L NP+ISI +L+E I GPDFPT G+I+ + I +Y GRG ++R+R +EE G G Sbjct: 198 LSKNPDISIAELMEDIEGPDFPTAGLIL-GKSGIRRAYETGRGSIQMRSRAVIEERGGGR 256 Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA--EDVRIVLFPKNRSLDPD 323 IVVTEIP+QV K+R+IEKIAEL+ K+I + D+RDE++ VR+V+ + + + Sbjct: 257 QRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRVVIDVR-KDANAS 315 Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383 +++ +++ + ++T F +NM L GR P+++ L L +L H++ V+ RR+ + ++ Sbjct: 316 VILNNLYKQTPLQTSFGVNMIALVNGR-PKLINLKEALVHYLEHQKTVVRRRTQYNLRKA 374 Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVDAILNLRLRSLR 440 R IL+GL IA +IDEII+ IR D K M S RF L+E Q AIL++RLR L Sbjct: 375 KDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQRFKLSEKQAQAILDMRLRRLT 434 Query: 441 KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500 LE +I++E + LL +++++L + + E+ E+++ F RRT Sbjct: 435 GLERDKIEAEYNELLNYISELEAILADEEVLLQLVRDELTEIRDRFGDE-----RRT--- 486 Query: 501 EVSRADKATLQ-QAMIEKEPITVVISNRGWIRSLKSHSV--------DLSALHFKEGDSL 551 E+ L+ + +I +E I + +S+ +I+ L + + ++ E D + Sbjct: 487 EIQLGGFEDLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRAQNRGGRGVQGMNTLEEDFV 546 Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAFV-- 607 + T D +L + G+ Y L + LS + G + I+L +++ I T Sbjct: 547 SQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIELGNDEVISTMIAVK 606 Query: 608 -YDSTCKLLVVSSK 620 +S LV ++K Sbjct: 607 DLESEDNFLVFATK 620 >gi|153086|gb|AAA73952.1| DNA gyrase A subunit [Staphylococcus aureus] Length = 889 Score = 425 bits (1093), Expect = e-116, Method: Compositional matrix adjust. Identities = 242/614 (39%), Positives = 376/614 (61%), Gaps = 30/614 (4%) Query: 26 LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85 + E +L YA+S I RA+PD+RDG KPVHRRI++ ++E G+ ++KKSARIVG+V+GK Sbjct: 18 MRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDKSYKKSARIVGDVMGK 77 Query: 86 LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145 HPHGD S+Y+++VR+AQ F RYPL+ GQGNFG++DGD AAA RYTEARMT++ +L+ Sbjct: 78 YHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEARMTKITLELLR 137 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 +++D +DF D Y+ + EP V P++FPNLLANG SGIAVGMAT+IP HN+ E+ L+ Sbjct: 138 DINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATNIPPHNLTELINGVLS 197 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265 L NP+ISI +L+E I GPDFPT G+I+ + I +Y GRG ++R+R +EE G G Sbjct: 198 LSKNPDISIAELMEDIEGPDFPTAGLIL-GKSGIRRAYETGRGSIQMRSRAVIEERGGGR 256 Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA--EDVRIVLFPKNRSLDPD 323 IVVTEIP+QV K+R+IEKIAEL+ K+I + D+RDE++ VR+V+ + + + Sbjct: 257 QRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRVVIDVR-KDANAS 315 Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383 +++ +++ + ++T F +NM L GR P+++ L L +L H++ V+ RR+ + ++ Sbjct: 316 VILNNLYKQTPLQTSFGVNMIALVNGR-PKLINLKEALVHYLEHQKTVVRRRTQYNLRKA 374 Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVDAILNLRLRSLR 440 R IL+GL IA +IDEII+ IR D K M S RF L+E Q AIL++RLR L Sbjct: 375 KDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQRFKLSEKQAQAILDMRLRRLT 434 Query: 441 KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500 LE +I++E + LL +++++L + + E+ E+++ F RRT Sbjct: 435 GLERDKIEAEYNELLNYISELEAILADEEVLLQLVRDELTEIRDRFGDD-----RRT--- 486 Query: 501 EVSRADKATLQ-QAMIEKEPITVVISNRGWIRSLKSHSV--------DLSALHFKEGDSL 551 E+ L+ + +I +E I + +S+ +I+ L + + ++ E D + Sbjct: 487 EIQLGGFEDLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRAQNRGGRGVQGMNTLEEDFV 546 Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAFV-- 607 + T D +L + G+ Y L + LS + G + I+L +++ I T Sbjct: 547 SQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIELENDEVISTMIAVK 606 Query: 608 -YDSTCKLLVVSSK 620 +S LV ++K Sbjct: 607 DLESEDNFLVFATK 620 >gi|21281735|ref|NP_644821.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus MW2] gi|49484918|ref|YP_042139.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus MSSA476] gi|88193829|ref|YP_498614.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus NCTC 8325] gi|297209446|ref|ZP_06925844.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300911470|ref|ZP_07128919.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Staphylococcus aureus subsp. aureus TCH70] gi|38604895|sp|Q8NKW8|GYRA_STAAW RecName: Full=DNA gyrase subunit A gi|59797749|sp|Q6GD84|GYRA_STAAS RecName: Full=DNA gyrase subunit A gi|114149316|sp|Q2G2Q0|GYRA_STAA8 RecName: Full=DNA gyrase subunit A gi|540542|dbj|BAA01370.1| DNA gyrase A [Staphylococcus aureus] gi|21203170|dbj|BAB93871.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus MW2] gi|49243361|emb|CAG41778.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus MSSA476] gi|87201387|gb|ABD29197.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus NCTC 8325] gi|296885907|gb|EFH24842.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300887649|gb|EFK82845.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Staphylococcus aureus subsp. aureus TCH70] gi|329731627|gb|EGG67987.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus 21189] Length = 887 Score = 425 bits (1093), Expect = e-116, Method: Compositional matrix adjust. Identities = 242/614 (39%), Positives = 376/614 (61%), Gaps = 30/614 (4%) Query: 26 LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85 + E +L YA+S I RA+PD+RDG KPVHRRI++ ++E G+ ++KKSARIVG+V+GK Sbjct: 18 MRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDKSYKKSARIVGDVMGK 77 Query: 86 LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145 HPHGD S+Y+++VR+AQ F RYPL+ GQGNFG++DGD AAA RYTEARMT++ +L+ Sbjct: 78 YHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEARMTKITLELLR 137 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 +++D +DF D Y+ + EP V P++FPNLLANG SGIAVGMAT+IP HN+ E+ L+ Sbjct: 138 DINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATNIPPHNLTELINGVLS 197 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265 L NP+ISI +L+E I GPDFPT G+I+ + I +Y GRG ++R+R +EE G G Sbjct: 198 LSKNPDISIAELMEDIEGPDFPTAGLIL-GKSGIRRAYETGRGSIQMRSRAVIEERGGGR 256 Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA--EDVRIVLFPKNRSLDPD 323 IVVTEIP+QV K+R+IEKIAEL+ K+I + D+RDE++ VR+V+ + + + Sbjct: 257 QRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRVVIDVR-KDANAS 315 Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383 +++ +++ + ++T F +NM L GR P+++ L L +L H++ V+ RR+ + ++ Sbjct: 316 VILNNLYKQTPLQTSFGVNMIALVNGR-PKLINLKEALVHYLEHQKTVVRRRTQYNLRKA 374 Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVDAILNLRLRSLR 440 R IL+GL IA +IDEII+ IR D K M S RF L+E Q AIL++RLR L Sbjct: 375 KDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQRFKLSEKQAQAILDMRLRRLT 434 Query: 441 KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500 LE +I++E + LL +++++L + + E+ E+++ F RRT Sbjct: 435 GLERDKIEAEYNELLNYISELEAILADEEVLLQLVRDELTEIRDRFGDD-----RRT--- 486 Query: 501 EVSRADKATLQ-QAMIEKEPITVVISNRGWIRSLKSHSV--------DLSALHFKEGDSL 551 E+ L+ + +I +E I + +S+ +I+ L + + ++ E D + Sbjct: 487 EIQLGGFEDLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRAQNRGGRGVQGMNTLEEDFV 546 Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAFV-- 607 + T D +L + G+ Y L + LS + G + I+L +++ I T Sbjct: 547 SQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIELENDEVISTMIAVK 606 Query: 608 -YDSTCKLLVVSSK 620 +S LV ++K Sbjct: 607 DLESEDNFLVFATK 620 >gi|317489248|ref|ZP_07947765.1| DNA gyrase, subunit A [Eggerthella sp. 1_3_56FAA] gi|316911649|gb|EFV33241.1| DNA gyrase, subunit A [Eggerthella sp. 1_3_56FAA] Length = 932 Score = 425 bits (1093), Expect = e-116, Method: Compositional matrix adjust. Identities = 242/599 (40%), Positives = 353/599 (58%), Gaps = 23/599 (3%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 V++ L ++ +L YA+S I RA+PD+RDG KPVHRRI++AM+E G KSA Sbjct: 86 VRSAYLGKEMQTSFLEYAMSVIVSRALPDVRDGLKPVHRRILYAMNESGYTPNRPHMKSA 145 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R VG+VIGK HPHGD +VYD++VRLAQPF R PL+ G GNFG+IDGD AAA RYTE+R+ Sbjct: 146 RTVGDVIGKYHPHGDFAVYDTMVRLAQPFSMRVPLVDGHGNFGSIDGDGAAAMRYTESRL 205 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 +VA +L+ +D++ VDF+ Y+E EP V P++FPNLL NG+ GIAVGMAT+IP HN+ Sbjct: 206 DKVAMELLRDLDKETVDFQPNYDESLEEPTVLPARFPNLLVNGSQGIAVGMATNIPPHNL 265 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E +A ++DNP+++ E+L++ + GPDFPTGGII+ ++ I ++Y GRG VRA+ Sbjct: 266 GETIDATCLMLDNPDVTTEELMKALPGPDFPTGGIIM-GKKGIRDAYETGRGSLTVRAKC 324 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316 VEE G IVVTEIPYQV + RL+EK+ EL+ K++P + +I D + ++ Sbjct: 325 KVEEGKNGRSSIVVTEIPYQVNRQRLLEKLGELVREKKLPEISNIHDGADRHGIDIIIDL 384 Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376 + P +++ ++ + ++ F + M L G P+V+ L +L ++AH+ EV+ RR+ Sbjct: 385 KKDAIPQVVLNKLYKHTQLQVGFGVIMLSLVDG-APRVLSLKEMLHYYIAHQEEVIVRRT 443 Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVDAILN 433 + + + R IL+GL+IA NIDEII IIR+ K M RF+LT+ Q AIL Sbjct: 444 RYELAKAEERAHILEGLIIALDNIDEIIHIIRSSQTDKEAAERMTERFALTDKQTAAILE 503 Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493 +RLR L LE +I+ EL LL +L+ + I E+ EVK+ F Sbjct: 504 MRLRRLTGLEHQKIEDELKELLERIAYYKRVLSDDQLVHEIIKEELLEVKKKFGSP---- 559 Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSVDLSALHF 545 RRT E A K + +I +E + V ++ G+++ L K +S ++ Sbjct: 560 -RRTLLSE---AAKDLDVEDLIAEESMVVTMTKAGYVKRLPVATYRQQKRGGKGMSGVNL 615 Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDI 602 K+ D ++ A T +L ST GK Y L L H G AI L+ L + I Sbjct: 616 KDNDYVEHLFVASTHSYMLFFSTKGKVYRLKVYELPEASRHARGTAIVNLLPLEKGETI 674 >gi|47459329|ref|YP_016191.1| DNA gyrase subunit A [Mycoplasma mobile 163K] gi|47458659|gb|AAT27980.1| DNA gyrase subunit A [Mycoplasma mobile 163K] Length = 920 Score = 425 bits (1093), Expect = e-116, Method: Compositional matrix adjust. Identities = 254/697 (36%), Positives = 410/697 (58%), Gaps = 39/697 (5%) Query: 12 LVEE---NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68 L+EE N+ +++ + +L YA+S I RA+PD RDG KPVHRRI++ M+E+GL + Sbjct: 68 LIEEETDNLAPINVSKEMRTSFLEYAMSVIVSRALPDARDGLKPVHRRILYGMTELGLFY 127 Query: 69 GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128 A +KKSAR+VG+V+GK HPHGD SVY+++VR+AQ F RYPLI G GNFG+IDGDSAAA Sbjct: 128 NAQYKKSARVVGDVLGKYHPHGDSSVYEAMVRMAQDFSLRYPLIDGHGNFGSIDGDSAAA 187 Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188 RYTEARM+++A +++G+ +D VDF Y+ + EP V PS+ PNLL +G +GIAVGMA Sbjct: 188 MRYTEARMSRIASSMVEGLKKDTVDFIPNYDGSEEEPSVLPSRIPNLLISGATGIAVGMA 247 Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248 T+IP HN+ E +A +AL N EI+IE+L+++I GPDFPTG I+ + I+ +Y GRG Sbjct: 248 TTIPPHNLTETIDAVVALARNSEITIEELMQHIKGPDFPTGAEILGT-SGIITAYETGRG 306 Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-E 307 +R++ +E + G I++TEIPY+V+K +IEKIA L KRI + +IRDE++ + Sbjct: 307 AIVLRSKSHIETLKSGKSRIIITEIPYEVKKPAVIEKIALLSKEKRIEGISEIRDETSRK 366 Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367 +R+V+ K +++ P++++ + L++++ + NM L G P+++ L L +L H Sbjct: 367 GIRVVIDLK-KNVIPEVILNKVLKLTNLQVNYNFNMIALVKGE-PKLLNLKQALDVYLKH 424 Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLT 424 + +V+ RR+ F ++ R IL+GL+IA NIDE+I +IR N++ + +++ F L+ Sbjct: 425 QIDVVTRRTKFDLERAQDRAHILEGLIIAVSNIDEVIRLIRSSTNDNDAQSKLMASFKLS 484 Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484 E Q AI+++RL L L + + EL+ L E +++LNS ++ + I E+ E+K Sbjct: 485 EIQAKAIIDMRLGRLTSLAIEKTQDELNALKQEIAGYENILNSHEKLIDLIVSELEEIKA 544 Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWI--------RSLKS 535 F G R T S D ++ + +I + I + +S G++ RS K Sbjct: 545 RF------GDERRTIINTS--DYGIIKDEDLIPNKNIAITLSKNGYVKRTPLTDFRSQKR 596 Query: 536 HSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLL 593 V + D + L HT IL+ ++ K Y + A + LS + G Sbjct: 597 GGVGVYTHKTYADDDVDSILTTHTHTDILVFTSSAKVYKIRAHQIPELSRQAKGVPFINF 656 Query: 594 IDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTR---KGKTFLKVSSE 647 I+++ + +V+ Y LL ++ G I +++ I A R GK L + + Sbjct: 657 INIDKKEKVVSLLSVEEYFEGTYLLTITKNG---IAKKTSIEAYKRIQSNGKFALSLKED 713 Query: 648 EKMKLVVKVTGDHVAVVGENR-KLLIFSIDQIPEMSR 683 +++ V+ + + ++G N K++ F +I M R Sbjct: 714 DELFKVITIDDEDSVIIGANNGKVVHFDSKEIRPMGR 750 >gi|87160436|ref|YP_492728.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|282920725|ref|ZP_06328444.1| DNA gyrase, A subunit [Staphylococcus aureus A9765] gi|284023043|ref|ZP_06377441.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus 132] gi|294849834|ref|ZP_06790574.1| hypothetical protein SKAG_01923 [Staphylococcus aureus A9754] gi|93204587|sp|Q2FKQ0|GYRA_STAA3 RecName: Full=DNA gyrase subunit A gi|87126410|gb|ABD20924.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|282594133|gb|EFB99121.1| DNA gyrase, A subunit [Staphylococcus aureus A9765] gi|294823382|gb|EFG39811.1| hypothetical protein SKAG_01923 [Staphylococcus aureus A9754] Length = 887 Score = 425 bits (1093), Expect = e-116, Method: Compositional matrix adjust. Identities = 242/614 (39%), Positives = 376/614 (61%), Gaps = 30/614 (4%) Query: 26 LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85 + E +L YA+S I RA+PD+RDG KPVHRRI++ ++E G+ ++KKSARIVG+V+GK Sbjct: 18 MRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDKSYKKSARIVGDVMGK 77 Query: 86 LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145 HPHGD S+Y+++VR+AQ F RYPL+ GQGNFG++DGD AAA RYTEARMT++ +L+ Sbjct: 78 YHPHGDLSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEARMTKITLELLR 137 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 +++D +DF D Y+ + EP V P++FPNLLANG SGIAVGMAT+IP HN+ E+ L+ Sbjct: 138 DINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATNIPPHNLTELINGVLS 197 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265 L NP+ISI +L+E I GPDFPT G+I+ + I +Y GRG ++R+R +EE G G Sbjct: 198 LSKNPDISIAELMEDIEGPDFPTAGLIL-GKSGIRRAYETGRGSIQMRSRAVIEERGGGR 256 Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA--EDVRIVLFPKNRSLDPD 323 IVVTEIP+QV K+R+IEKIAEL+ K+I + D+RDE++ VR+V+ + + + Sbjct: 257 QRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRVVIDVR-KDANAS 315 Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383 +++ +++ + ++T F +NM L GR P+++ L L +L H++ V+ RR+ + ++ Sbjct: 316 VILNNLYKQTPLQTSFGVNMIALVNGR-PKLINLKEALVHYLEHQKTVVRRRTQYNLRKA 374 Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVDAILNLRLRSLR 440 R IL+GL IA +IDEII+ IR D K M S RF L+E Q AIL++RLR L Sbjct: 375 KDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQRFKLSEKQAQAILDMRLRRLT 434 Query: 441 KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500 LE +I++E + LL +++++L + + E+ E+++ F RRT Sbjct: 435 GLERDKIEAEYNELLNYISELEAILADEEVLLQLVRDELTEIRDRFGDD-----RRT--- 486 Query: 501 EVSRADKATLQ-QAMIEKEPITVVISNRGWIRSLKSHSV--------DLSALHFKEGDSL 551 E+ L+ + +I +E I + +S+ +I+ L + + ++ E D + Sbjct: 487 EIQLGGFENLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRAQNRGGRGVQGMNTLEEDFV 546 Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAFV-- 607 + T D +L + G+ Y L + LS + G + I+L +++ I T Sbjct: 547 SQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIELENDEVISTMIAVK 606 Query: 608 -YDSTCKLLVVSSK 620 +S LV ++K Sbjct: 607 DLESEDNFLVFATK 620 >gi|256830857|ref|YP_003159585.1| DNA gyrase subunit A [Desulfomicrobium baculatum DSM 4028] gi|256580033|gb|ACU91169.1| DNA gyrase, A subunit [Desulfomicrobium baculatum DSM 4028] Length = 848 Score = 425 bits (1093), Expect = e-116, Method: Compositional matrix adjust. Identities = 242/611 (39%), Positives = 367/611 (60%), Gaps = 30/611 (4%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 +S+ L++ YL Y+LS I RAIPD+RDG KPVHRRI+ AM E+G + A+KKSAR+V Sbjct: 4 ISIEKELQKSYLEYSLSVIIGRAIPDVRDGLKPVHRRILFAMHELGNTYNRAYKKSARVV 63 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGD +VYD+LVR+AQ F R PL+ GQGNFG+IDGDSAAA RYTE RM+++ Sbjct: 64 GDVIGKFHPHGDSAVYDALVRMAQEFNMRDPLVDGQGNFGSIDGDSAAAMRYTEVRMSKL 123 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A L +++D V+FR Y+ EP V P+K PNLL NG+SGIAVGMAT+IP HN+ E+ Sbjct: 124 AGSFLADIEKDTVEFRPNYDNSLQEPSVLPTKVPNLLVNGSSGIAVGMATNIPPHNLGEV 183 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 + L L+D+P++SI++L++YI PDFPTG +I + I E+YR GRG R+R+R +E Sbjct: 184 VDGTLRLLDDPQMSIDELMQYIKAPDFPTGALIY-GKAGIREAYRTGRGSVRIRSRIEIE 242 Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFPKNR 318 + IVV EIPY + KS L+EKIA L+ ++I + D+RDES + +RIV+ K + Sbjct: 243 KRKGDLESIVVKEIPYALNKSTLVEKIAMLVNERKIEGISDLRDESDMKGIRIVMDLK-K 301 Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378 + D+++ +F + +ET F +NM + R PQ++ + +L+ +L +RREV+ RRS F Sbjct: 302 GVFSDVIVNQLFKFTSLETSFGINMMAVVNNR-PQLLNVKQVLEYFLDYRREVVIRRSRF 360 Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVDAILNLR 435 ++ R IL+GL IA IDE++A+IR P K + RF L+E Q AIL++R Sbjct: 361 DLRKAQHRAHILEGLRIALDFIDEVVALIRASKTPQEAKERLRERFGLSEIQAQAILDMR 420 Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495 L+ L LE ++ E LL + E + S++ + + + I E++++++ F+ Sbjct: 421 LQRLTNLEREKLLEEYAELLKQIEYLTSVIENTEVLKSVIRQELQDLRDNFATPRK---- 476 Query: 496 RTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFK 546 E+ D ++ + +I EP+ + +S G++ R + ++ + Sbjct: 477 ----SEILAHDPDSIDIEDIIPDEPVVITLSRNGYLKRTSLDNYRQQRRGGTGITGVQVA 532 Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQDIVT 604 E D + L + L S GK Y + + G G+ + L+ L+ N+ I Sbjct: 533 EEDFITFILTTSNHQYMNLFSNKGKMYQVKVHQIPEGGRTARGKHVANLLPLDSNEYIAA 592 Query: 605 AFVYDSTCKLL 615 A TC+ L Sbjct: 593 AM----TCRDL 599 >gi|302331778|gb|ADL21971.1| DNA topoisomerase (ATP-hydrolyzing) subunit A, GyrA [Staphylococcus aureus subsp. aureus JKD6159] Length = 886 Score = 425 bits (1093), Expect = e-116, Method: Compositional matrix adjust. Identities = 242/614 (39%), Positives = 376/614 (61%), Gaps = 30/614 (4%) Query: 26 LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85 + E +L YA+S I RA+PD+RDG KPVHRRI++ ++E G+ ++KKSARIVG+V+GK Sbjct: 18 MRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDKSYKKSARIVGDVMGK 77 Query: 86 LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145 HPHGD S+Y+++VR+AQ F RYPL+ GQGNFG++DGD AAA RYTEARMT++ +L+ Sbjct: 78 YHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEARMTKITLELLR 137 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 +++D +DF D Y+ + EP V P++FPNLLANG SGIAVGMAT+IP HN+ E+ L+ Sbjct: 138 DINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATNIPPHNLTELINGVLS 197 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265 L NP+ISI +L+E I GPDFPT G+I+ + I +Y GRG ++R+R +EE G G Sbjct: 198 LSKNPDISIAELMEDIEGPDFPTAGLIL-GKSGIRRAYETGRGSIQMRSRAVIEERGGGR 256 Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA--EDVRIVLFPKNRSLDPD 323 IVVTEIP+QV K+R+IEKIAEL+ K+I + D+RDE++ VR+V+ + + + Sbjct: 257 QRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRVVIDVR-KDANAS 315 Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383 +++ +++ + ++T F +NM L GR P+++ L L +L H++ V+ RR+ + ++ Sbjct: 316 VILNNLYKQTPLQTSFGVNMIALVNGR-PKLINLKEALVHYLEHQKTVVRRRTQYNLRKA 374 Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVDAILNLRLRSLR 440 R IL+GL IA +IDEII+ IR D K M S RF L+E Q AIL++RLR L Sbjct: 375 KDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQRFKLSEKQAQAILDMRLRRLT 434 Query: 441 KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500 LE +I++E + LL +++++L + + E+ E+++ F RRT Sbjct: 435 GLERDKIEAEYNELLNYISELEAILADEEVLLQLVRDELTEIRDRFGDD-----RRT--- 486 Query: 501 EVSRADKATLQ-QAMIEKEPITVVISNRGWIRSLKSHSV--------DLSALHFKEGDSL 551 E+ L+ + +I +E I + +S+ +I+ L + + ++ E D + Sbjct: 487 EIQLGGFEDLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRAQNRGGRGVQGMNTLEEDFV 546 Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAFV-- 607 + T D +L + G+ Y L + LS + G + I+L +++ I T Sbjct: 547 SQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIELENDEVISTMIAVK 606 Query: 608 -YDSTCKLLVVSSK 620 +S LV ++K Sbjct: 607 DLESEDNFLVFATK 620 >gi|317177520|dbj|BAJ55309.1| DNA gyrase subunit A [Helicobacter pylori F16] Length = 828 Score = 425 bits (1093), Expect = e-116, Method: Compositional matrix adjust. Identities = 249/625 (39%), Positives = 381/625 (60%), Gaps = 46/625 (7%) Query: 4 DNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63 DN+ N +N+ V + ++EE YLAY++S I RA+PD RDG KPVHRRI++AM E Sbjct: 3 DNLINET----KNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHE 58 Query: 64 MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123 +GL A+KKSARIVG+VIGK HPHGD +VYD+LVR+AQ F R L+ GQGNFG+IDG Sbjct: 59 LGLTSKVAYKKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSIDG 118 Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183 D+AAA RYTEARMT+ +E IL+ +D+D +DF Y++ EP + PS+ PNLL NG +GI Sbjct: 119 DNAAAMRYTEARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGI 178 Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243 AVGMATSIP H + EI +A + +++NP ++++LE++ GPDFPTGGII + I+E+Y Sbjct: 179 AVGMATSIPPHRIDEIIDALVHVLENPNAGLDEILEFVKGPDFPTGGIIY-GKAGIIEAY 237 Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303 + GRG +VRA+ VE+ + IV+ E+P+Q K++L+E+I++L K+I + ++RD Sbjct: 238 KTGRGRVKVRAKVHVEKT-KNKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRD 296 Query: 304 ES-AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362 ES E +R+V+ K ++ ++++ ++ L+ MET F + + + + P++ L +L+ Sbjct: 297 ESDREGIRVVIELKRDAM-SEVVLNHLYKLTTMETTFSIILLAI-YNKEPKIFTLLELLR 354 Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVS 419 +L HR+ ++ RR+ F ++ R IL+G LIA NIDEI+ +I+ P K ++ Sbjct: 355 LFLNHRKTIIIRRTIFELEKAKARAHILEGYLIALDNIDEIVQLIKTSQSPEAAKNALME 414 Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479 RF+L+E Q AIL +RL+ L LE +IK E NLL ++ +L S + + E+ Sbjct: 415 RFTLSEIQSKAILEMRLQRLTGLERDKIKEEYQNLLELIADLNGILKSEDRLNEVVKTEL 474 Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539 EVKE FS +RRT EV + +I EP+ V +S +G+++ VD Sbjct: 475 LEVKEQFS-----SQRRTEIQEVYENIDI---EDLIANEPMVVSMSYKGYVK-----RVD 521 Query: 540 LSALHFK-------------EGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLL 581 L A + E D ++ A+T D +L ++ G K Y +P + + Sbjct: 522 LKAYERQNRGGKGKLSGNTYEDDFIENFFVANTHDILLFITNKGQLYHLKVYKIPEASRI 581 Query: 582 SGRGHGEAIQLLIDLNHNQDIVTAF 606 + G+AI LI L ++ I+ Sbjct: 582 A---MGKAIVNLISLAPDEKIMATL 603 >gi|15922996|ref|NP_370530.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus Mu50] gi|156978337|ref|YP_001440596.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus Mu3] gi|254663940|ref|ZP_05143412.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus Mu50-omega] gi|38604966|sp|Q932M0|GYRA_STAAM RecName: Full=DNA gyrase subunit A gi|14245773|dbj|BAB56168.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus Mu50] gi|156720472|dbj|BAF76889.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus Mu3] Length = 889 Score = 425 bits (1093), Expect = e-116, Method: Compositional matrix adjust. Identities = 242/614 (39%), Positives = 376/614 (61%), Gaps = 30/614 (4%) Query: 26 LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85 + E +L YA+S I RA+PD+RDG KPVHRRI++ ++E G+ ++KKSARIVG+V+GK Sbjct: 18 MRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDKSYKKSARIVGDVMGK 77 Query: 86 LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145 HPHGD S+Y+++VR+AQ F RYPL+ GQGNFG++DGD AAA RYTEARMT++ +L+ Sbjct: 78 YHPHGDLSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEARMTKITLELLR 137 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 +++D +DF D Y+ + EP V P++FPNLLANG SGIAVGMAT+IP HN+ E+ L+ Sbjct: 138 DINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATNIPPHNLTELINGVLS 197 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265 L NP+ISI +L+E I GPDFPT G+I+ + I +Y GRG ++R+R +EE G G Sbjct: 198 LSKNPDISIAELMEDIEGPDFPTAGLIL-GKSGIRRAYETGRGSIQMRSRAVIEERGGGR 256 Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA--EDVRIVLFPKNRSLDPD 323 IVVTEIP+QV K+R+IEKIAEL+ K+I + D+RDE++ VR+V+ + + + Sbjct: 257 QRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRVVIDVR-KDANAS 315 Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383 +++ +++ + ++T F +NM L GR P+++ L L +L H++ V+ RR+ + ++ Sbjct: 316 VILNNLYKQTPLQTSFGVNMIALVNGR-PKLINLKEALVHYLEHQKTVVRRRTQYNLRKA 374 Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVDAILNLRLRSLR 440 R IL+GL IA +IDEII+ IR D K M S RF L+E Q AIL++RLR L Sbjct: 375 KDRAHILEGLRIALDHIDEIISTIRESDTDKVAMKSLQQRFKLSEKQAQAILDMRLRRLT 434 Query: 441 KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500 LE +I++E + LL +++++L + + E+ E+++ F RRT Sbjct: 435 GLERDKIEAEYNELLNYISELETILADEEVLLQLVRDELTEIRDRFGDD-----RRT--- 486 Query: 501 EVSRADKATLQ-QAMIEKEPITVVISNRGWIRSLKSHSV--------DLSALHFKEGDSL 551 E+ L+ + +I +E I + +S+ +I+ L + + ++ E D + Sbjct: 487 EIQLGGFEDLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRAQNRGGRGVQGMNTLEEDFV 546 Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAFV-- 607 + T D +L + G+ Y L + LS + G + I+L +++ I T Sbjct: 547 SQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIELENDEVISTMIAVK 606 Query: 608 -YDSTCKLLVVSSK 620 +S LV ++K Sbjct: 607 DLESEDNFLVFATK 620 >gi|49474366|ref|YP_032408.1| DNA gyrase subunit A [Bartonella quintana str. Toulouse] gi|49239870|emb|CAF26268.1| DNA gyrase subunit a [Bartonella quintana str. Toulouse] Length = 925 Score = 425 bits (1093), Expect = e-116, Method: Compositional matrix adjust. Identities = 259/711 (36%), Positives = 401/711 (56%), Gaps = 66/711 (9%) Query: 6 ISNSNTLVEENV----KAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61 +++ N L E +V + +S+ ++ YL YA+S I RA+PD+RDG KPVHRRI+HAM Sbjct: 1 MTDFNPLPERDVLTGIEPISIIDEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAM 60 Query: 62 SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121 +EMGL F ++KSA +VGEV+GK HPHGD S+YD+LVR+AQ F R PLI GQGNFG++ Sbjct: 61 NEMGLAFNKPYRKSAGVVGEVMGKFHPHGDASIYDALVRMAQDFSLRNPLIDGQGNFGSV 120 Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181 DGD AA RYTE R+ +V+E +L +D+D VDF+D Y+ D EPVV P++FPNLL NG+ Sbjct: 121 DGDPPAAMRYTECRLEKVSEELLADIDKDTVDFQDNYDGRDREPVVLPARFPNLLVNGSG 180 Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241 GIAVGMAT+IP HN+ E+ +A +ALID+P I+++K++E I GPDFPTGGII+ I Sbjct: 181 GIAVGMATNIPPHNLGEVVDACIALIDDPNIALDKIIEIIPGPDFPTGGIIL-GHSGIRS 239 Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301 +Y GRG +RA+ +EE+ G I+V+EIPYQV K+ +IEK+AEL+ KRI + D+ Sbjct: 240 AYETGRGSIIMRAKVDIEEMHNGRQAIIVSEIPYQVNKATMIEKMAELVRDKRIEGISDL 299 Query: 302 RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361 RDES D V+ + + ++++ ++ + ++T F NM L+ G+ P+ M L +L Sbjct: 300 RDESDRDGYRVVIELKKDVIAEVVLNQLYRYTLLQTSFGCNMVALNGGK-PEQMTLLDML 358 Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE----------- 410 + +++ R EV+ RR+ + ++ R +L GL +A NIDEIIA+IR Sbjct: 359 RAFVSFREEVVSRRTKYLLRKARERAHVLVGLALAVANIDEIIALIRKASDPQIARSQLM 418 Query: 411 ----------------DKPKPVMV--SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELD 452 D P+ ++ + ++L+E Q AIL LRL+ L L +I EL+ Sbjct: 419 ERRWLAADVASLIKLIDDPRHIIYGDNTYNLSEEQARAILELRLQRLTALGRDEIADELN 478 Query: 453 NLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ 512 + + +L S + + + E+ ++E F+ RRT F S + Sbjct: 479 KIGVDIADYLHILASRSRIMSIVKDELNVLREAFATP-----RRTIFGFGSAEMDC---E 530 Query: 513 AMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRIL 564 +I E + V +S+ G+I R+ + S + K+ D + +T +L Sbjct: 531 DLIAPEDMVVTVSHSGYIKRVPLNTYRAQRRGGKGRSGMSTKDEDFVTHLFVVNTHTPVL 590 Query: 565 LLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD------STCK 613 ST G K + LP G + + G A+ ++ L + I T S Sbjct: 591 FFSTRGIVYKEKVWRLPIG---TPQSRGRALINMLPLQQGERITTIMPLPEDEASWSALD 647 Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVV 664 ++ +++G + S+ + R GK +K+ E+++ L V+ +H VV Sbjct: 648 VMFATTRGTVRRNKLSDFVQVNRNGKIAMKLDEEDEI-LSVETCTEHDDVV 697 >gi|269967070|ref|ZP_06181138.1| DNA gyrase, subunit A [Vibrio alginolyticus 40B] gi|269828329|gb|EEZ82595.1| DNA gyrase, subunit A [Vibrio alginolyticus 40B] Length = 697 Score = 425 bits (1092), Expect = e-116, Method: Compositional matrix adjust. Identities = 246/605 (40%), Positives = 362/605 (59%), Gaps = 57/605 (9%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + V++ L YL YA+S I RA+PD+RDG KPVHRR++ AM+ +G D+ +KKSA Sbjct: 8 ITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSA 67 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG+IDGDSAAA RYTE RM Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVRM 127 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 ++A +L +D++ VD+ Y+ + P V P+K PNLL NG SGIAVGMAT+IP HN+ Sbjct: 128 AKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGASGIAVGMATNIPPHNL 187 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ + LA I+N EI+I++L++YI GPDFPT +I R+ IV++Y+ GRG +R++ Sbjct: 188 GEVIDGCLAYINNEEITIDELMDYIPGPDFPTAALI-SGRKGIVDAYKTGRGKIYMRSKA 246 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFP 315 +E G I+VTEIPYQV K+RLIEKIAEL+ K++ + +RDES +D +RIV+ Sbjct: 247 DIEVEKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIEC 306 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 K ++ ++++ +++ + ++T F +NM L+ G+ PQ+ L +LK ++ HRREV+ RR Sbjct: 307 KRDAVG-EVVLNNLYAQTQLQTTFGINMVALNNGQ-PQLFNLKDMLKCFVDHRREVVTRR 364 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR------------ 420 + F ++ R IL+GL +A NIDEII +IR P K +++R Sbjct: 365 TIFELRKARERAHILEGLALALANIDEIIELIRKAPTPAEAKAGLIARGWDLGNVSAMLE 424 Query: 421 ----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458 + LTE Q AIL+LRL L LE +I E LL E Sbjct: 425 RAGTDAARPEWLEPEYGIRDGQYFLTEQQAQAILDLRLHKLTGLEHEKILGEYKTLLEEI 484 Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518 ++ +L S ++ I E+ V++ F + RRT E++ A + +I +E Sbjct: 485 AELMHILASTERLMEVIREELEAVRDGFGDA-----RRT---EITAASHDIDMEELIARE 536 Query: 519 PITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570 + V +S+ G+++ S + SA K+ D ++ L A+T D IL ST G Sbjct: 537 DVVVTLSHGGYVKYQVLSDYESQRRGGKGKSATKMKDEDHIERLLVANTHDNILCFSTRG 596 Query: 571 KAYTL 575 K Y L Sbjct: 597 KTYRL 601 >gi|189502213|ref|YP_001957930.1| hypothetical protein Aasi_0828 [Candidatus Amoebophilus asiaticus 5a2] gi|189497654|gb|ACE06201.1| hypothetical protein Aasi_0828 [Candidatus Amoebophilus asiaticus 5a2] Length = 816 Score = 425 bits (1092), Expect = e-116, Method: Compositional matrix adjust. Identities = 241/597 (40%), Positives = 357/597 (59%), Gaps = 29/597 (4%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 +EN+ +++ + Y+ Y++S I RA+PD+RDG KPVHRR+++ M E+G+ FK Sbjct: 6 QENIIPINIVDEMRTAYIDYSMSVIIARALPDVRDGLKPVHRRVLYGMHELGVTHNKPFK 65 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSARIVGEV+GK HPHGD SVYD++VR+AQ + RYPL+ GQGNFG+IDGD AA RYTE Sbjct: 66 KSARIVGEVLGKYHPHGDASVYDAMVRMAQDWSLRYPLVQGQGNFGSIDGDGPAAMRYTE 125 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 AR+ + AE +L +++D VDF+ +++ EP V P+K P LL NG+SGIAVGMAT++P Sbjct: 126 ARLARTAEEMLADLNKDTVDFQTNFDDSLQEPTVLPAKLPQLLINGSSGIAVGMATNMPP 185 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E+ E +A I+N +I+IE+L++YI GPDFPT GII S + I E+YR GRG +R Sbjct: 186 HNLTEVIEGIIAYINNNDITIEELMQYIQGPDFPTRGIIYGS-QGIREAYRTGRGKVLMR 244 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313 A+ +E G I+VTEIPY V K+ LIE+ A+L+ K+I + DIRDES +D ++ Sbjct: 245 AKATIETTPTGKEQIIVTEIPYMVNKAMLIERTAQLVNEKKIEGISDIRDESDKDGLRIV 304 Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373 + R +++ +++ + ++ F +N L G+ PQ + L +++ ++AHR EVL Sbjct: 305 YDLKRDAIGQVVLNNLYKNTSLQFSFGVNNVALVAGK-PQTLNLKELIQHFVAHRHEVLL 363 Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAII---RNEDKPKPVMVSRFSLTENQVDA 430 R++ + + +R+ IL+G LIA N+D II++I R+ + K ++ + L+E Q A Sbjct: 364 RKTKYELNQAQKRLHILEGYLIALDNLDAIISLIRSSRDAEAAKQGLIQTYQLSEQQAKA 423 Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490 IL LRL+ L +E +I E E++ +L+ Q I E+ E+KE + Sbjct: 424 ILELRLQRLTGMERDKILQEHRETTQLIERLQLILSDRDLQMTLIKNELAELKEQY---- 479 Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSA 542 G R T E D TL+ MI +E + + IS +G+I R V + Sbjct: 480 --GDARRTVIE-HNTDDITLED-MIAEEDMVITISQQGYIKRTPLSEYRIQNRGGVGARS 535 Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLI 594 KE D + A T +L+ +T G K YTLP G S G AIQ LI Sbjct: 536 TATKEDDYITHLFVASTHQYLLIFTTLGKVFWKKVYTLPEG---SKSSKGRAIQNLI 589 >gi|148266453|ref|YP_001245396.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus JH9] gi|150392486|ref|YP_001315161.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus JH1] gi|253316844|ref|ZP_04840057.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|257793544|ref|ZP_05642523.1| DNA gyrase, A subunit [Staphylococcus aureus A9781] gi|258411150|ref|ZP_05681429.1| DNA gyrase subunit A [Staphylococcus aureus A9763] gi|258420946|ref|ZP_05683880.1| DNA gyrase, A subunit [Staphylococcus aureus A9719] gi|258446225|ref|ZP_05694385.1| DNA gyrase, A subunit [Staphylococcus aureus A6300] gi|258449116|ref|ZP_05697222.1| DNA gyrase, A subunit [Staphylococcus aureus A6224] gi|258454406|ref|ZP_05702374.1| DNA gyrase, A subunit [Staphylococcus aureus A5937] gi|282927756|ref|ZP_06335370.1| DNA gyrase, A subunit [Staphylococcus aureus A10102] gi|297245905|ref|ZP_06929767.1| hypothetical protein SLAG_01999 [Staphylococcus aureus A8796] gi|147739522|gb|ABQ47820.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus JH9] gi|149944938|gb|ABR50874.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus JH1] gi|257787516|gb|EEV25856.1| DNA gyrase, A subunit [Staphylococcus aureus A9781] gi|257840035|gb|EEV64500.1| DNA gyrase subunit A [Staphylococcus aureus A9763] gi|257843136|gb|EEV67551.1| DNA gyrase, A subunit [Staphylococcus aureus A9719] gi|257855051|gb|EEV77994.1| DNA gyrase, A subunit [Staphylococcus aureus A6300] gi|257857549|gb|EEV80444.1| DNA gyrase, A subunit [Staphylococcus aureus A6224] gi|257863500|gb|EEV86260.1| DNA gyrase, A subunit [Staphylococcus aureus A5937] gi|282590516|gb|EFB95594.1| DNA gyrase, A subunit [Staphylococcus aureus A10102] gi|285815733|gb|ADC36220.1| DNA gyrase subunit A [Staphylococcus aureus 04-02981] gi|297177270|gb|EFH36523.1| hypothetical protein SLAG_01999 [Staphylococcus aureus A8796] gi|312828569|emb|CBX33411.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315129549|gb|EFT85541.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus CGS03] gi|329725940|gb|EGG62419.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus 21172] Length = 889 Score = 425 bits (1092), Expect = e-116, Method: Compositional matrix adjust. Identities = 242/614 (39%), Positives = 376/614 (61%), Gaps = 30/614 (4%) Query: 26 LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85 + E +L YA+S I RA+PD+RDG KPVHRRI++ ++E G+ ++KKSARIVG+V+GK Sbjct: 18 MRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDKSYKKSARIVGDVMGK 77 Query: 86 LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145 HPHGD S+Y+++VR+AQ F RYPL+ GQGNFG++DGD AAA RYTEARMT++ +L+ Sbjct: 78 YHPHGDLSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEARMTKITLELLR 137 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 +++D +DF D Y+ + EP V P++FPNLLANG SGIAVGMAT+IP HN+ E+ L+ Sbjct: 138 DINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATNIPPHNLTELINGVLS 197 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265 L NP+ISI +L+E I GPDFPT G+I+ + I +Y GRG ++R+R +EE G G Sbjct: 198 LSKNPDISIAELMEDIEGPDFPTAGLIL-GKSGIRRAYETGRGSIQMRSRAVIEERGGGR 256 Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA--EDVRIVLFPKNRSLDPD 323 IVVTEIP+QV K+R+IEKIAEL+ K+I + D+RDE++ VR+V+ + + + Sbjct: 257 QRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRVVIDVR-KDANAS 315 Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383 +++ +++ + ++T F +NM L GR P+++ L L +L H++ V+ RR+ + ++ Sbjct: 316 VILNNLYKQTPLQTSFGVNMIALVNGR-PKLINLKEALVHYLEHQKTVVRRRTQYNLRKA 374 Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVDAILNLRLRSLR 440 R IL+GL IA +IDEII+ IR D K M S RF L+E Q AIL++RLR L Sbjct: 375 KDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQRFKLSEKQAQAILDMRLRRLT 434 Query: 441 KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500 LE +I++E + LL +++++L + + E+ E+++ F RRT Sbjct: 435 GLERDKIEAEYNELLNYISELETILADEEVLLQLVRDELTEIRDRFGDD-----RRT--- 486 Query: 501 EVSRADKATLQ-QAMIEKEPITVVISNRGWIRSLKSHSV--------DLSALHFKEGDSL 551 E+ L+ + +I +E I + +S+ +I+ L + + ++ E D + Sbjct: 487 EIQLGGFEDLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRAQNRGGRGVQGMNTLEEDFV 546 Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAFV-- 607 + T D +L + G+ Y L + LS + G + I+L +++ I T Sbjct: 547 SQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIELENDEVISTMIAVK 606 Query: 608 -YDSTCKLLVVSSK 620 +S LV ++K Sbjct: 607 DLESEDNFLVFATK 620 >gi|323439693|gb|EGA97411.1| DNA gyrase subunit A [Staphylococcus aureus O11] gi|323443266|gb|EGB00883.1| DNA gyrase subunit A [Staphylococcus aureus O46] Length = 886 Score = 425 bits (1092), Expect = e-116, Method: Compositional matrix adjust. Identities = 242/614 (39%), Positives = 376/614 (61%), Gaps = 30/614 (4%) Query: 26 LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85 + E +L YA+S I RA+PD+RDG KPVHRRI++ ++E G+ ++KKSARIVG+V+GK Sbjct: 18 MRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDKSYKKSARIVGDVMGK 77 Query: 86 LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145 HPHGD S+Y+++VR+AQ F RYPL+ GQGNFG++DGD AAA RYTEARMT++ +L+ Sbjct: 78 YHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEARMTKITLELLR 137 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 +++D +DF D Y+ + EP V P++FPNLLANG SGIAVGMAT+IP HN+ E+ L+ Sbjct: 138 DINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATNIPPHNLTELINGVLS 197 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265 L NP+ISI +L+E I GPDFPT G+I+ + I +Y GRG ++R+R +EE G G Sbjct: 198 LSKNPDISIAELMEDIEGPDFPTAGLIL-GKSGIRRAYETGRGSIQMRSRAVIEERGGGR 256 Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA--EDVRIVLFPKNRSLDPD 323 IVVTEIP+QV K+R+IEKIAEL+ K+I + D+RDE++ VR+V+ + + + Sbjct: 257 QRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRVVIDVR-KDANAS 315 Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383 +++ +++ + ++T F +NM L GR P+++ L L +L H++ V+ RR+ + ++ Sbjct: 316 VILNNLYKQTPLQTSFGVNMIALVNGR-PKLINLKEALVHYLEHQKTVVRRRTQYNLRKA 374 Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVDAILNLRLRSLR 440 R IL+GL IA +IDEII+ IR D K M S RF L+E Q AIL++RLR L Sbjct: 375 KDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQRFKLSEKQAQAILDMRLRRLT 434 Query: 441 KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500 LE +I++E + LL +++++L + + E+ E+++ F RRT Sbjct: 435 GLERDKIEAEYNELLNYISELEAILADEEVLLQLVRDELTEIRDRFGDE-----RRT--- 486 Query: 501 EVSRADKATLQ-QAMIEKEPITVVISNRGWIRSLKSHSV--------DLSALHFKEGDSL 551 E+ L+ + +I +E I + +S+ +I+ L + + ++ E D + Sbjct: 487 EIQLGGFEDLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRAQNRGGRGVQGMNTLEEDFV 546 Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAFV-- 607 + T D +L + G+ Y L + LS + G + I+L +++ I T Sbjct: 547 SQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIELENDEVISTMIAVK 606 Query: 608 -YDSTCKLLVVSSK 620 +S LV ++K Sbjct: 607 DLESEDNFLVFATK 620 >gi|332673551|gb|AEE70368.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Helicobacter pylori 83] Length = 828 Score = 425 bits (1092), Expect = e-116, Method: Compositional matrix adjust. Identities = 249/625 (39%), Positives = 381/625 (60%), Gaps = 46/625 (7%) Query: 4 DNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63 DN+ N +N+ V + ++EE YLAY++S I RA+PD RDG KPVHRRI++AM E Sbjct: 3 DNLINET----KNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHE 58 Query: 64 MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123 +GL A+KKSARIVG+VIGK HPHGD +VYD+LVR+AQ F R L+ GQGNFG+IDG Sbjct: 59 LGLTSKVAYKKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSIDG 118 Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183 D+AAA RYTEARMT+ +E IL+ +D+D +DF Y++ EP + PS+ PNLL NG +GI Sbjct: 119 DNAAAMRYTEARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGI 178 Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243 AVGMATSIP H + EI +A + +++NP ++++LE++ GPDFPTGGII + I+E+Y Sbjct: 179 AVGMATSIPPHRIDEIIDALVHVLENPNAGLDEILEFVKGPDFPTGGIIY-GKAGIIEAY 237 Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303 + GRG +VRA+ VE+ + IV+ E+P+Q K++L+E+I++L K+I + ++RD Sbjct: 238 KTGRGRVKVRAKVHVEKT-KNKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRD 296 Query: 304 ES-AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362 ES E +R+V+ K ++ ++++ ++ L+ MET F + + + + P++ L +L+ Sbjct: 297 ESDREGIRVVIELKRDAM-SEIVLNHLYKLTTMETTFSIILLAI-YNKEPKIFTLLELLR 354 Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVS 419 +L HR+ ++ RR+ F ++ R IL+G LIA NIDEI+ +I+ P K ++ Sbjct: 355 LFLNHRKTIIIRRTIFELEKAKARAHILEGYLIALDNIDEIVRLIKTSQSPEAAKNALME 414 Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479 RF+L+E Q AIL +RL+ L LE +IK E NLL ++ +L S + + E+ Sbjct: 415 RFTLSEIQSKAILEMRLQRLTGLERDKIKEEYQNLLELISDLNGILKSEDRLNEVVKTEL 474 Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539 EVKE FS +RRT EV + +I EP+ V +S +G+++ VD Sbjct: 475 LEVKEQFS-----SQRRTEIQEVYENIDI---EDLIANEPMVVSMSYKGYVK-----RVD 521 Query: 540 LSALHFK-------------EGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLL 581 L A + E D ++ A+T D +L ++ G K Y +P + + Sbjct: 522 LKAYERQNRGGKGKLSGNTYEDDFIENFFVANTHDILLFITNKGQLYHLKVYKIPEASRI 581 Query: 582 SGRGHGEAIQLLIDLNHNQDIVTAF 606 + G+AI LI L ++ I+ Sbjct: 582 A---MGKAIVNLISLAPDEKIMATL 603 >gi|322417550|ref|YP_004196773.1| DNA gyrase subunit A [Geobacter sp. M18] gi|320123937|gb|ADW11497.1| DNA gyrase, A subunit [Geobacter sp. M18] Length = 837 Score = 425 bits (1092), Expect = e-116, Method: Compositional matrix adjust. Identities = 278/771 (36%), Positives = 440/771 (57%), Gaps = 60/771 (7%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 N +V++ ++ Y+ YA+S I RA+PD+RDG KPVHRR + AM +M D+ +KKS Sbjct: 6 NKVSVNIEDEMKRSYMDYAMSVIVGRALPDVRDGLKPVHRRCLFAMYDMSNDWNKPYKKS 65 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 AR+VG+VIGK HPHGD +VYD+LVR+AQ F RYPL+ GQGNFG+IDGDS AA RYTE R Sbjct: 66 ARVVGDVIGKYHPHGDTAVYDTLVRMAQDFSLRYPLVDGQGNFGSIDGDSPAAMRYTEIR 125 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 M Q+A +L ++++ V + Y++ EP+V PSKFPNLL NG++GIAVGMAT+IP HN Sbjct: 126 MEQLAHELLADLEKETVPYGPNYDDSLKEPLVLPSKFPNLLVNGSAGIAVGMATNIPPHN 185 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 + E+ + +A+I+NP+++ E+L+E I GPDFPTGG I RE I+++Y GRG ++RA+ Sbjct: 186 LSEVIDGIVAIIENPQLTFEELVEMIPGPDFPTGGFIY-GREGIMKAYSTGRGIIQMRAK 244 Query: 256 WCVEEVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314 +E + IVVTEIPYQV K+RL+EKIAEL+ K+I + D+RDES + V+ Sbjct: 245 VQIETQKKTERQSIVVTEIPYQVNKARLVEKIAELVKEKKIEGISDLRDESDREGMRVVI 304 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 + +P +L+ ++ + M++ F + M + R P+V+ L + ++ HR+E++ R Sbjct: 305 ELKKDENPTILLNHLYKQTQMQSSFGIIMLAIVHNR-PRVLTLRETIDFFIEHRKEIVTR 363 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVDAI 431 R+ F ++ + R IL+GL IA N+DE+IA+I+ P K ++ RF L++ Q AI Sbjct: 364 RTIFDLKKAEARAHILEGLKIALDNLDEVIALIKASASPAEAKTGLMERFGLSDLQAQAI 423 Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491 L++RL L LE +I EL +L ++ +L S + I E+ E+K+ F Sbjct: 424 LDMRLHRLTGLERDKIMEELREILKYIARLKEILASEAEILKIIVGELIELKDKF----- 478 Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSAL 543 G +R + + AD +L+ ++E E + V IS+ G+I R+ + + + Sbjct: 479 -GDKRRSEIVMQTAD-ISLEDTIVE-EDMVVTISHTGYIKRNAVTLYRAQRRGGKGKTGM 535 Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEAIQLLIDLNHNQD 601 KE D ++ A T D ++ + GK Y L + +GR G+AI L++L N+ Sbjct: 536 KTKEEDFVEQLFIASTKDYLMFFTDAGKVYWLKVYEIPEAGRAARGKAIVNLLNLAANEK 595 Query: 602 I-----VTAFVYDSTCKLLVVSSKGNAFIVEESEII--ANTRKGKTFLKVSSEEKMKLVV 654 I V FV D K ++++++ +V+++ ++ ++ R G + V+ +E KL+ Sbjct: 596 ITAILPVKEFVDD---KFIMMATRNG--VVKKTNMMEYSHPRVG-GIIAVNLDEGDKLIS 649 Query: 655 KVTGD---HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGI----------SDV 700 D V + N K + F D + + R +GVR + +D + +D Sbjct: 650 VALTDGKQDVLLATANGKAIRFKEDDVRTVGRVSRGVRGMALEDDVVIGMAILNEHFTDS 709 Query: 701 ICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751 F + E + G+ SE RGG G + K R+G+ + Sbjct: 710 TIFTVTE-----NGYGKRTEISEY----RTQSRGGKGVITIKTTERNGQVV 751 >gi|94264230|ref|ZP_01288025.1| DNA gyrase, subunit A [delta proteobacterium MLMS-1] gi|93455341|gb|EAT05545.1| DNA gyrase, subunit A [delta proteobacterium MLMS-1] Length = 850 Score = 425 bits (1092), Expect = e-116, Method: Compositional matrix adjust. Identities = 259/704 (36%), Positives = 401/704 (56%), Gaps = 48/704 (6%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 E++ VS+ L + YL YA+S I RA+PD+RDG KPVHRR+++AM E+ F K Sbjct: 13 EDIPNVSIEKELRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMRELNNYHNRPFLK 72 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 SARIVG+VIGK HPHGD +VYD+LVR+AQ F RYPL+ GQGNFG++DGD AA RYTEA Sbjct: 73 SARIVGDVIGKYHPHGDSAVYDTLVRMAQSFAMRYPLVDGQGNFGSVDGDPPAAMRYTEA 132 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 RMT++ + ++ +D++ VDF TY+ +EP+VFP++ PNLL NG++GIAVGMAT+IP H Sbjct: 133 RMTRIDQELISDLDKETVDFIPTYDNSQNEPLVFPARIPNLLVNGSAGIAVGMATNIPPH 192 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 N++E+ + + +I++P I++ L+E I GPDFPTGG I R I E+Y GRG +R+ Sbjct: 193 NLREVLDGLITMIEDPNITVSSLMEIISGPDFPTGGFIC-GRAGIREAYETGRGSLLIRS 251 Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVL 313 R +E+ G IV+TEIPYQ KS L+EKIA LI KRI + + RDES +RIV+ Sbjct: 252 RHHIEKHKSGREVIVITEIPYQQNKSTLLEKIAMLIKEKRIEAIAEFRDESDRHGMRIVI 311 Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNM-NVLSMGRVPQVMPLDGILKEWLAHRREVL 372 K + ++++ ++ ++ ++ F + M ++++M P+V+ L IL+ ++ HR+ V+ Sbjct: 312 ELKKDEI-AEVVINQLYKMTPLQKSFGIIMLSIVNMR--PEVLNLRQILENFILHRKTVV 368 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVD 429 +RR+++ ++ + + +L+GL IA N+DE++A+I+ P+ +++RF L+ Q Sbjct: 369 YRRTAYDLRKAEEKAHVLEGLKIAITNLDEVVALIKASANPQEAREGLINRFGLSAIQAQ 428 Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489 AIL +RL L LE +I E D L+ E + +L I E ++E + Sbjct: 429 AILEMRLHRLTGLEREKIIEEYDALMKEIIWLRQVLGDESLVMKIIREEFEAIRETYGDD 488 Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549 RRT E+ A L + MI +E + V +++ G+I K + VD + G Sbjct: 489 -----RRT---EIIDAPDEILPEDMIAREEMVVTVTHAGYI---KRNPVDTYRSQRRGGK 537 Query: 550 SLKIALH-----------AHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLL 593 +K A A T D +L S G K Y +P L+ G+A+ L Sbjct: 538 GIKGAGTTDEDFVSWMQVASTHDTLLFFSNKGRVFWRKVYEIPQAGRLA---RGKAVVNL 594 Query: 594 IDLNHNQDIVTAFVYDS-------TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS 646 ++L + + DS +L+ + KG SE ++GK L + Sbjct: 595 LELGAEEKVAAILPVDSFEVTEGGARYILMATKKGVVKKTALSEFARPLKRGKIALTIRE 654 Query: 647 EEKMKLVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSRG-KGVR 688 ++++ TGD+ ++ R + + F D I M RG GVR Sbjct: 655 DDEILGASLTTGDNEVLLLSRRGMAVRFHEDDIRAMGRGASGVR 698 >gi|261838062|gb|ACX97828.1| DNA gyrase subunit A [Helicobacter pylori 51] Length = 828 Score = 425 bits (1092), Expect = e-116, Method: Compositional matrix adjust. Identities = 249/625 (39%), Positives = 382/625 (61%), Gaps = 46/625 (7%) Query: 4 DNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63 DN+ N +N+ V + ++EE YLAY++S I RA+PD RDG KPVHRRI++AM E Sbjct: 3 DNLINET----KNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHE 58 Query: 64 MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123 +GL A+KKSARIVG+VIGK HPHGD +VYD+LVR+AQ F R L+ GQGNFG+IDG Sbjct: 59 LGLTSKVAYKKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSIDG 118 Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183 D+AAA RYTEARMT+ +E IL+ +D+D +DF Y++ EP + PS+ PNLL NG +GI Sbjct: 119 DNAAAMRYTEARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGI 178 Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243 AVGMATSIP H + EI +A + ++ NP ++++LE++ GPDFPTGGII + I+E+Y Sbjct: 179 AVGMATSIPPHRIDEIIDALVHVLGNPNAGLDEILEFVKGPDFPTGGIIY-GKAGIIEAY 237 Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303 + GRG +VRA+ VE+ + IV+ E+P+Q K++L+E+I++L K+I + ++RD Sbjct: 238 KTGRGRVKVRAKVHVEKT-KNKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRD 296 Query: 304 ES-AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362 ES E +R+V+ K ++ ++++ ++ L+ MET F + + + + P++ L +L+ Sbjct: 297 ESDREGIRVVIELKRDAM-SEIVLNHLYKLTTMETTFSIILLAI-YNKEPKIFTLLELLR 354 Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVS 419 +L HR+ ++ RR+ F ++ R IL+G LIA NIDEI+ +I+ P K ++ Sbjct: 355 LFLNHRKTIIIRRTIFELEKAKARAHILEGYLIALDNIDEIVRLIKTSQSPEAAKNALME 414 Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479 RF+L+E Q AIL +RL+ L LE +IK E NLL ++ +L S + + E+ Sbjct: 415 RFTLSEIQSKAILEMRLQRLTGLERDKIKEEYQNLLELISDLNGILKSEDRLNGVVKTEL 474 Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539 EVKE FS +RRT E+ A + + +I EP+ V +S +G+++ VD Sbjct: 475 LEVKEQFS-----SQRRT---EIQEAYENIDIEDLIANEPMVVSMSYKGYVK-----RVD 521 Query: 540 LSALHFK-------------EGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLL 581 L A + E D ++ A+T D +L ++ G K Y +P + + Sbjct: 522 LKAYERQNRGGKGKLSGNTYEDDFIENFFVANTHDILLFITNKGQLYHLKVYKIPEASRI 581 Query: 582 SGRGHGEAIQLLIDLNHNQDIVTAF 606 + G+AI LI L ++ I+ Sbjct: 582 A---MGKAIVNLISLAPDEKIMATL 603 >gi|190571348|ref|YP_001975706.1| DNA gyrase, A subunit [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|213018744|ref|ZP_03334552.1| DNA gyrase, A subunit [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|190357620|emb|CAQ55061.1| DNA gyrase, A subunit [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|212995695|gb|EEB56335.1| DNA gyrase, A subunit [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 900 Score = 425 bits (1092), Expect = e-116, Method: Compositional matrix adjust. Identities = 239/600 (39%), Positives = 358/600 (59%), Gaps = 47/600 (7%) Query: 13 VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72 +++N+ VS+ LE+ YL+YA+S I RAIPD+RDGFKPVHRRI++AMS G D G + Sbjct: 1 MQDNIVPVSIVKELEDSYLSYAMSVIISRAIPDVRDGFKPVHRRILYAMSRAGFDAGKPY 60 Query: 73 KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132 KK+ARIVG+V+GK HPHGD ++YDSLVR+AQ F PLI GQGNFG+IDGD A+ RYT Sbjct: 61 KKAARIVGDVMGKYHPHGDMAIYDSLVRMAQDFSLLLPLIDGQGNFGSIDGDPPASMRYT 120 Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192 EAR+ +V+ +L +DED VDFR Y+ ++EPVV P++FPNLL NG SG+AVGMAT+IP Sbjct: 121 EARLHRVSHFLLNDIDEDTVDFRPNYDGNETEPVVLPAEFPNLLVNGASGVAVGMATNIP 180 Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252 SHN+ EI +A + IDNPE+++++LLE + GPDFPTGG+I+ R I ++ GRG V Sbjct: 181 SHNLGEIIDACMLYIDNPEVTLDELLEVMPGPDFPTGGMIL-GRSGIRSAFATGRGSIVV 239 Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312 + + +E++ + IV+ EIPYQV K +LIEKI EL+ KRI + +IRDES + V Sbjct: 240 QGKTHIEDLPQDRQAIVINEIPYQVNKVKLIEKIGELVKEKRIDGITEIRDESDKSGIRV 299 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 + R+ + ++ I L+ + + F +N VL+ R P +M L I+ ++ R+EVL Sbjct: 300 VIDLRRNAEASFILNQILGLTPLRSSFSVNTLVLNNNR-PALMSLKEIIAAFVDFRKEVL 358 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---------------- 416 RR+ FR++ + I GL IA L+I E+I IIR P Sbjct: 359 IRRTEFRLRKTREKAHIYIGLYIAVLSIGEVIKIIRGAKDPAEASRELLNKEWKTSAEIN 418 Query: 417 ----MVSR---------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDS 463 ++S + LTE Q AIL+++L+ L LE+ ++++EL +++ ++ + Sbjct: 419 TIIGLISDSMSFLKDGVYRLTELQTKAILDMKLQRLTGLEKDKLEAELSSMINLIKEYIA 478 Query: 464 LLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVV 523 L SG++ +I ++E+K F+ R+T+ E +D + +I +E + V Sbjct: 479 FLGSGEKLMKEIKNNLQEIKNRFAVP-----RKTSIEE---SDTDIEAEDLIPQEDMVVT 530 Query: 524 ISNRGWIRSLK-SH-------SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575 ++ G+I+ +K SH KE D + +T +L S G+ Y L Sbjct: 531 VTMNGYIKRVKLSHYRTQHRGGKGKLGQGLKEEDVITKLFVGNTHTSLLFFSNTGRVYRL 590 >gi|317126748|ref|YP_004093030.1| DNA gyrase subunit alpha [Bacillus cellulosilyticus DSM 2522] gi|315471696|gb|ADU28299.1| DNA gyrase, A subunit [Bacillus cellulosilyticus DSM 2522] Length = 843 Score = 425 bits (1092), Expect = e-116, Method: Compositional matrix adjust. Identities = 225/572 (39%), Positives = 365/572 (63%), Gaps = 26/572 (4%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 VK +++ ++ ++ YA+S I RA+PD+RDG KPVHRRI++AM+E+G+ A+KKSA Sbjct: 9 VKEINISQEMKTSFMDYAMSVIVSRALPDVRDGLKPVHRRILYAMNELGMTSDKAYKKSA 68 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 RIVGEVIGK HPHGD +VY+++VR+AQ F RY L+ G GNFG++DGD+AAA RYTEARM Sbjct: 69 RIVGEVIGKYHPHGDSAVYETMVRMAQDFSYRYMLVDGHGNFGSVDGDAAAAMRYTEARM 128 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 ++++ +++ +++D +D+++ Y+ ++EP+V P++FPNLL NGTSGIAVGMAT+IP HN+ Sbjct: 129 SKISMELVRDINKDTIDYQENYDGSETEPIVLPARFPNLLVNGTSGIAVGMATNIPPHNL 188 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ + LAL +NP I+ +L+EYI GPDFPTG IV I +Y G+G +RA+ Sbjct: 189 GEVIDGVLALSENPTITSTELMEYIPGPDFPTGAEIV-GVSGIRRAYETGKGSITIRAKA 247 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316 +E+ G I+VTEIPYQV K+RLIEKIAEL+ K++ + D+RDES ++ Sbjct: 248 EIED-NNGKPRIIVTEIPYQVNKARLIEKIAELVRDKKLDGITDLRDESDRTGMRIVIEL 306 Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376 R ++ ++L+ +++ + +++ F +NM L GR P+V+ + +L +L H+R V+ RR+ Sbjct: 307 RRDVNANVLLNNLYKQTALQSSFGINMLALVDGR-PKVLSIKEVLYHYLEHQRVVIRRRT 365 Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAILN 433 F ++ + R IL+GL IA +IDEIIA+IR + ++ FSL+ +Q AIL+ Sbjct: 366 EFELKKAEARAHILEGLRIALDHIDEIIALIRGSQTTEIARQGLMENFSLSHDQAQAILD 425 Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493 +RL+ L LE +I++E L+ + +++ ++L ++ I E+ ++++ ++ Sbjct: 426 MRLQRLTGLERDKIEAEYQELVEKIKELKAILADDEKVLAIIREELTDIRDRYNDE---- 481 Query: 494 RRRT--TFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSAL 543 RRT TF E S D + +I ++ + + +S+ G+I RS K + + Sbjct: 482 -RRTIITFGEDSMED-----EDLIPRQNVVITLSHNGYIKRIPLSTYRSQKRGGRGVQGM 535 Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575 + D ++ ++ D +L + GK Y L Sbjct: 536 GTHDDDFVQHLFITNSHDHLLFFTNKGKVYRL 567 >gi|327438157|dbj|BAK14522.1| type IIA topoisomerase, A subunit [Solibacillus silvestris StLB046] Length = 832 Score = 425 bits (1092), Expect = e-116, Method: Compositional matrix adjust. Identities = 261/763 (34%), Positives = 436/763 (57%), Gaps = 44/763 (5%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 ++++ ++ ++ +L+YA+S I RA+PD+RDG KPVHRRI++ M E+G +KKS Sbjct: 8 HIESRNITTEIKSSFLSYAMSVIVSRALPDVRDGLKPVHRRILYGMQELGNTSDKPYKKS 67 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 ARIVG+V+GK HPHGD S+YD++VR+AQ F RY L+ G GNFG++DGD AAA RYTE+R Sbjct: 68 ARIVGDVMGKFHPHGDSSIYDAMVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAMRYTESR 127 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 M+++A +L+ +++D +D+ Y+ ++EP+V P+++PNLL NG SGIAVGMAT+IP H+ Sbjct: 128 MSKIAMEMLRDINKDTIDYGPNYDGSENEPLVLPARYPNLLVNGASGIAVGMATNIPPHH 187 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 + E + LA+ DNP I+ E+L+E I GPDFPTGGII+ R I +Y GRG +RA+ Sbjct: 188 LGETIDGVLAVADNPSITTEELMEIIPGPDFPTGGIIL-GRSGIRRAYESGRGSLTIRAK 246 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315 +E+ G I+V E+PYQV K++LIEKIAEL+ K+I + ++RDES + ++ Sbjct: 247 VEIEQASNGKETILVHELPYQVNKAKLIEKIAELVRDKKIDGITNLRDESDRNGMRIVIE 306 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 R + ++++ ++F + M++ F +NM L G+ P+V+ L +L +L H++ V+ RR Sbjct: 307 VRRDANANVVLNNLFKQTAMQSSFGVNMLALVDGQ-PKVLSLKEVLYHYLEHQKVVIKRR 365 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAII---RNEDKPKPVMVSRFSLTENQVDAIL 432 ++F ++ + R IL+GL IA +IDEII+II R+ ++ +P ++ RF+L+E Q AIL Sbjct: 366 TAFELRKAEERAHILEGLRIALDHIDEIISIIRASRSGEEARPQLMERFNLSERQAQAIL 425 Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492 ++RL L LE +I++E LL +++ ++L + I E+ ++KE +S Sbjct: 426 DMRLVRLSGLEREKIEAEYQELLKLIDELKAILADEAKVVEIIRTEMTDIKERYSDE--- 482 Query: 493 GRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSLKSHSV--------DLSAL 543 RRT E++ ++ + +I +E + +++ G+I+ L +++ + + Sbjct: 483 --RRT---EITAGGLEMIEDEDLIPRENSVLTLTHNGYIKRLAANTYRSQKRGGRGVQGM 537 Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDLNH 598 E D ++ L T D IL ++ G K Y +P + G I L++++ Sbjct: 538 GTNEDDFVEHLLFTSTHDTILFFTSKGKVFRAKGYEIPE---FGRQAKGLPIVNLLNIDK 594 Query: 599 NQDI-----VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653 + + VT F D+ + ++K + AN R E+ + Sbjct: 595 GEHVTAMIRVTEFKEDA---YFIFTTKTGVTKRTPVDQFANIRTNGLIAITLREDDDLIS 651 Query: 654 VKVT-GDHVAVVGENRKLLI-FSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE-GL 709 V +T G ++G + +L+ F D I M R GVR ++G V+ +I E G Sbjct: 652 VHLTDGTKEIIIGTSDGMLVRFKEDDIRSMGRSAAGVRGIKLREGDF--VVGMEILEPGQ 709 Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752 + Y + + L RGG+G + ++GK + Sbjct: 710 EILVVTENGYGKRTPESEYRLQSRGGLGLKTMQITDKNGKMCA 752 >gi|283469235|emb|CAQ48446.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus ST398] Length = 889 Score = 425 bits (1092), Expect = e-116, Method: Compositional matrix adjust. Identities = 242/614 (39%), Positives = 376/614 (61%), Gaps = 30/614 (4%) Query: 26 LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85 + E +L YA+S I RA+PD+RDG KPVHRRI++ ++E G+ ++KKSARIVG+V+GK Sbjct: 18 MRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDKSYKKSARIVGDVMGK 77 Query: 86 LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145 HPHGD S+Y+++VR+AQ F RYPL+ GQGNFG++DGD AAA RYTEARMT++ +L+ Sbjct: 78 YHPHGDLSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEARMTKITLELLR 137 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 +++D +DF D Y+ + EP V P++FPNLLANG SGIAVGMAT+IP HN+ E+ L+ Sbjct: 138 DINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATNIPPHNLTELINGVLS 197 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265 L NP+ISI +L+E I GPDFPT G+I+ + I +Y GRG ++R+R +EE G G Sbjct: 198 LSKNPDISIAELMEDIEGPDFPTAGLIL-GKSGIRRAYETGRGSIQMRSRAVIEERGGGR 256 Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA--EDVRIVLFPKNRSLDPD 323 IVVTEIP+QV K+R+IEKIAEL+ K+I + D+RDE++ VR+V+ + + + Sbjct: 257 QRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRVVIDVR-KDANAS 315 Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383 +++ +++ + ++T F +NM L GR P+++ L L +L H++ V+ RR+ + ++ Sbjct: 316 VILNNLYKQTPLQTSFGVNMIALVNGR-PKLINLKEALVHYLEHQKTVVRRRTQYNLRKA 374 Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVDAILNLRLRSLR 440 R IL+GL IA +IDEII+ IR D K M S RF L+E Q AIL++RLR L Sbjct: 375 KDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQRFKLSEKQAQAILDMRLRRLT 434 Query: 441 KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500 LE +I++E + LL +++++L + + E+ E+++ F RRT Sbjct: 435 GLERDKIEAEYNELLNYISELEAILADEEVLLQLVRDELTEIRDRFGDD-----RRT--- 486 Query: 501 EVSRADKATLQ-QAMIEKEPITVVISNRGWIRSLKSHSV--------DLSALHFKEGDSL 551 E+ L+ + +I +E I + +S+ +I+ L + + ++ E D + Sbjct: 487 EIQLGGFEDLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRAQNRGGRGVQGMNTLEEDFV 546 Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAFV-- 607 + T D +L + G+ Y L + LS + G + I+L +++ I T Sbjct: 547 SQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIELENDEVISTMIAVK 606 Query: 608 -YDSTCKLLVVSSK 620 +S LV ++K Sbjct: 607 DLESEDNFLVFATK 620 >gi|197335945|ref|YP_002156004.1| DNA gyrase, A subunit [Vibrio fischeri MJ11] gi|197317435|gb|ACH66882.1| DNA gyrase, A subunit [Vibrio fischeri MJ11] Length = 878 Score = 424 bits (1091), Expect = e-116, Method: Compositional matrix adjust. Identities = 248/605 (40%), Positives = 359/605 (59%), Gaps = 57/605 (9%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + V++ L YL YA+S I RA+PD+RDG KPVHRR++ AM +G D+ +KKSA Sbjct: 8 ITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMDVLGNDWNKPYKKSA 67 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG+IDGDSAAA RYTE RM Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVRM 127 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 ++A +L +D++ VD+ Y+ + P V P+K PNLL NG+SGIAVGMAT+IP HN+ Sbjct: 128 AKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ LA I+N EI+I++L+ YI GPDFPT +I R+ IV++Y+ GRG +R++ Sbjct: 188 TEVVNGCLAFIENEEITIDELMNYIPGPDFPTAALI-SGRKGIVDAYKTGRGKVYMRSKA 246 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFP 315 +E G I+VTEIPYQV K+RLIEKIAEL+ K++ + +RDES +D +RIV+ Sbjct: 247 NIEADKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIEC 306 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 K R ++++ +++ L+ ++T F +NM L G+ P++ L +LK ++ HRREV+ RR Sbjct: 307 K-RDAVGEVVLNNLYSLTQLQTTFGINMVALDNGQ-PKLFNLKEMLKCFVDHRREVVTRR 364 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR------------ 420 + F ++ R IL+GL +A NIDEII +IRN P K ++SR Sbjct: 365 TIFELRKARDRAHILEGLALALANIDEIIELIRNAPTPAEAKEGLISRGWDLGNVASMLE 424 Query: 421 ----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458 + LTE Q AIL LRL L LE +I E LL E Sbjct: 425 RAGTDAARPDWLEPEFGIREGKYFLTEQQAQAILELRLHRLTGLEHEKILDEYKALLDEI 484 Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518 ++ +L S ++ I E+ V++++ RRT E+ A + +I +E Sbjct: 485 AELMHILASTERLMEVIRDELVMVRDMYGDE-----RRT---EIGAAIHDIDMEDLITQE 536 Query: 519 PITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570 + V +S G+++ + + SA K+ D ++ L A+T D IL ST G Sbjct: 537 DVVVTLSREGYVKYQILSDYEAQRRGGKGKSATKMKDEDFIERLLVANTHDNILCFSTRG 596 Query: 571 KAYTL 575 KAY+L Sbjct: 597 KAYSL 601 >gi|317051764|ref|YP_004112880.1| DNA gyrase subunit A [Desulfurispirillum indicum S5] gi|316946848|gb|ADU66324.1| DNA gyrase, A subunit [Desulfurispirillum indicum S5] Length = 821 Score = 424 bits (1091), Expect = e-116, Method: Compositional matrix adjust. Identities = 246/672 (36%), Positives = 396/672 (58%), Gaps = 30/672 (4%) Query: 11 TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70 TL E+++ V ++ +E Y+ YA+S I RA+PD+RDG KPVHRR++ AM E+G+ + Sbjct: 5 TLFPEDIQVVDIKREMESAYIDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELGVAYNK 64 Query: 71 AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130 +KKSARIVG+VIGK HPHGD +VYD++VR+ Q F RYPLI GQGNFG++DGDSAAA R Sbjct: 65 PYKKSARIVGDVIGKYHPHGDSAVYDTIVRMVQDFSLRYPLIDGQGNFGSVDGDSAAAMR 124 Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190 YTE R+ ++++ +L ++++ V+F+ Y++ EP + P++ PNLL NG+SGIAVGMAT+ Sbjct: 125 YTEVRLKRISDELLTDLEKNTVEFQSNYDDTIQEPKLLPARIPNLLINGSSGIAVGMATN 184 Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250 IP HN+ E+ + L L+D PE I ++++ I GPDFPT G I ++ I+++YR GRG Sbjct: 185 IPPHNLGEVVDGLLLLLDKPEADIAEIMQLIKGPDFPTAGFIT-GKQGIIDAYRTGRGRI 243 Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDV 309 R+RAR +E G I+VTEIPYQV KSRL+EKI EL+ KRI + D+RDES E + Sbjct: 244 RMRARAQIETSKSGRETIIVTEIPYQVNKSRLLEKIVELVKEKRIEGIADLRDESDREGM 303 Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369 RIV+ K R + ++ ++ + ME F + +N+ + P+V+ L IL+ ++ HRR Sbjct: 304 RIVVEIK-RGEHAESILNRLYKFTPMEGTFGV-INLALVNNSPRVLNLKEILEYFIEHRR 361 Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTEN 426 E++ R F + ++ IL+GL +A N+DE+I IR + K +++RF ++ Sbjct: 362 EIVIARIKFELANAIKKAHILEGLKVAIENLDEVIERIRASATGKEAKEDLIARFQFSDE 421 Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486 Q AIL++RL+ L LE +I + + +LA + + +L + + + I E+ E++E + Sbjct: 422 QAQAILDMRLQRLTGLEIEKIIRDYEEVLALIDDLQDILANDSRVIDIIRTELHEIREKY 481 Query: 487 SKSTDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSLKSHSVDLS---- 541 + RRT + D + + +I EP + ++N G+++ + + Sbjct: 482 ADP-----RRTIIID----DHEEIDLEDLIADEPTVITLTNDGYVKRTPADTYKSQHRGG 532 Query: 542 ----ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGRG-HGEAIQLLID 595 L KEGD + T + +++ + G+ Y + A N+ GR G+AI +D Sbjct: 533 KGKVGLDIKEGDFVTDIFVCSTHEYLMIFTDRGRVYWIKAYNIPEQGRNSRGKAIVNFVD 592 Query: 596 LNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652 L ++ I T F + LL ++ G A SE +KG + + ++++ Sbjct: 593 LEKDEKISTVFPVREFSEDKFLLFITKNGIAKKTPLSEYANIRKKGVNAINLDDDDELIQ 652 Query: 653 VVKVTGDHVAVV 664 V+ G + +V Sbjct: 653 VMHTNGSNSVMV 664 >gi|152990238|ref|YP_001355960.1| DNA gyrase subunit A [Nitratiruptor sp. SB155-2] gi|151422099|dbj|BAF69603.1| DNA gyrase subunit A [Nitratiruptor sp. SB155-2] Length = 820 Score = 424 bits (1091), Expect = e-116, Method: Compositional matrix adjust. Identities = 243/602 (40%), Positives = 391/602 (64%), Gaps = 26/602 (4%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 ++++ + + +++ YL Y++S I RA+PD RDG KPVHRRI++AM+E+GL AA+KK Sbjct: 9 QDIQEIDIEESVKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMNELGLTSRAAYKK 68 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 SARIVG+VIGK HPHGD +VY++LVR+AQ F R PL+ GQGNFG+IDGD+AAA RYTEA Sbjct: 69 SARIVGDVIGKYHPHGDSAVYEALVRMAQDFSMRIPLVDGQGNFGSIDGDNAAAMRYTEA 128 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 RMT +AE +L+ +D+D VDF Y++ SEP V PS+ PNLL NG+SGIAVGMAT+IP H Sbjct: 129 RMTPIAEELLRDIDKDTVDFIPNYDDTLSEPDVLPSRVPNLLLNGSSGIAVGMATNIPPH 188 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 + E+ +A + LI+NP+ + +++E+I GPDFPTGGII ++ I+ +Y+ GRG +VRA Sbjct: 189 RLDELIDALVLLIENPKAELHEVMEHIQGPDFPTGGIIF-GKQGILNAYKTGRGRIKVRA 247 Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVL 313 + +E+V + IV+ EIPYQV K+RLIE+IA+++ K++ + +IRDES E +R+V+ Sbjct: 248 KTHIEKV-KNREVIVIDEIPYQVNKARLIEQIAQMVREKQLEGISEIRDESDREGIRVVI 306 Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373 K + + D+++ +++ + ME F + + + + + P+V L +L +L HRR ++ Sbjct: 307 ELK-KDVMSDIILNNLYKSTQMEVTFGIILLAI-VNKEPKVFTLLELLHLFLNHRRTIVI 364 Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDKP--KPVMVSRFSLTENQVDA 430 RR+ + ++ R IL+GLL A NIDE+IA I+ +ED P + ++ +F LTE Q +A Sbjct: 365 RRTIYELEKAKARAHILEGLLKALDNIDEVIATIKASEDTPTARVNLMEKFELTEIQANA 424 Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490 IL+++L+ L LE ++++E L+ E E++ ++L S ++ I E+ E+KE F+ + Sbjct: 425 ILDMKLQRLTGLEREKLENEYKELMEEIERLSAILKSEEKLNEIIKTELLEIKEKFT-TP 483 Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSVDLSA 542 L ++ E+ D +I EP+ V I++RG+I+ + K +A Sbjct: 484 RLTEIVESYEEIDIED-------LIPNEPMVVTITHRGYIKRVPLKQYEKQKRGGKGKTA 536 Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEAIQLLIDLNHNQ 600 + E D ++ ++T D ++ ++ G+ Y L + +GR G+A+ L+ L ++ Sbjct: 537 VTTYEDDFIEDFFISNTHDTLMFVTDRGQLYWLKVYKIPEAGRTAKGKAVVNLLQLQPDE 596 Query: 601 DI 602 I Sbjct: 597 KI 598 >gi|302872929|ref|YP_003841562.1| DNA gyrase, A subunit [Clostridium cellulovorans 743B] gi|307687882|ref|ZP_07630328.1| DNA gyrase subunit A [Clostridium cellulovorans 743B] gi|302575786|gb|ADL49798.1| DNA gyrase, A subunit [Clostridium cellulovorans 743B] Length = 837 Score = 424 bits (1091), Expect = e-116, Method: Compositional matrix adjust. Identities = 278/760 (36%), Positives = 434/760 (57%), Gaps = 46/760 (6%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 V + +++ Y+ YA+S I RA+PD+RDG KPVHRRI+++M E+G+ +K ARIV Sbjct: 11 VDISNEMKKCYIDYAMSVIVGRALPDVRDGLKPVHRRILYSMYELGITPDKPHRKCARIV 70 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+V+GK HPHGD SVYD+LVRLAQ F RY L+ G GNFG++DGD AAA RYTEARM ++ Sbjct: 71 GDVLGKYHPHGDSSVYDALVRLAQDFSMRYTLVDGHGNFGSVDGDGAAAMRYTEARMDKM 130 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A +++ ++++ VDF Y+ ++ EP V PS+FPNLL NG+SGIAVGMAT+IP HN+ E+ Sbjct: 131 ANEMVRDINKNTVDFIPNYDGDEQEPTVIPSRFPNLLVNGSSGIAVGMATNIPPHNLTEV 190 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 + LI+NPE ++ L+ I GPDFPT GII+ + I E+Y GRG VRA +E Sbjct: 191 IDGVNLLIENPEATVLDLMTKIKGPDFPTAGIIM-GKSGIREAYETGRGKVVVRANATIE 249 Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKNR 318 E G G I+VTEIPYQV K++LIE IA+L+ K+I + D+RDES D +RIV+ K R Sbjct: 250 EDG-GRHKIIVTEIPYQVNKAKLIENIADLVKDKKIVGISDLRDESDRDGMRIVIELK-R 307 Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378 +P++++ ++ + ++ F + M L + P+V+ L +L +L ++EV+ RR+ F Sbjct: 308 DANPNVILNQLYKHTKLQDSFGIIMLAL-VDNQPKVLNLKEVLVHYLNFQKEVITRRTQF 366 Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAILNLR 435 ++ + R IL+GL IA NIDE+I+IIR+ ++ K + RF+L+E Q AI+ +R Sbjct: 367 ELEKAEARAHILEGLKIALDNIDEVISIIRSSKSTNEAKERLQERFALSEKQSTAIVEMR 426 Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495 LRSL LE +I+ EL L+A K+ +L + N I E+ E+K F G Sbjct: 427 LRSLTGLERQKIEDELSELMALINKLKEILANEALILNIIRDELNEIKGRF------GDE 480 Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD--------LSALHFKE 547 R T E S+ D + +I++ + V ++ G+I+ + + + A KE Sbjct: 481 RRTAIEASQNDINI--EDLIQEHKVVVTLTRAGYIKRIAESTYSAQKRGGKGIQAATTKE 538 Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLP------AGNLLSGRGHGEAIQLLIDLNHN-- 599 D ++ T D IL S G+ YTL AG G I LL+ Sbjct: 539 DDIVENIFVTSTHDHILFFSNFGRVYTLKGYEIPEAGRTAKGTN---VINLLLLRPEEKI 595 Query: 600 QDIVTAFVYDSTCKLLVVSSKGNAFIVEES--EIIANTRK-GKTFLKVSSEEKMKLVVKV 656 Q ++T ++ + L+ + KG I++++ E +N RK G + + ++++ V Sbjct: 596 QAVITLSEFEKSQYLVFGTKKG---IIKKTTLEDFSNIRKNGLNAVGLREDDELISVRLS 652 Query: 657 TG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKIC-EGLTWID 713 +G D + +V +N + F + + M R GV+ S +D +V+ +I E + + Sbjct: 653 SGEDQIIMVTQNGYSIRFKEEDVRPMGRTATGVKGISLRDE--DNVVSMEIVDESMDILV 710 Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753 + Y + RGG+G + K ++GK +++ Sbjct: 711 VSENGYGKRTPIGEYKCQNRGGMGIITYKVSEKTGKVVAA 750 >gi|159901139|ref|YP_001547386.1| DNA gyrase subunit A [Herpetosiphon aurantiacus ATCC 23779] gi|159894178|gb|ABX07258.1| DNA gyrase, A subunit [Herpetosiphon aurantiacus ATCC 23779] Length = 827 Score = 424 bits (1091), Expect = e-116, Method: Compositional matrix adjust. Identities = 251/687 (36%), Positives = 397/687 (57%), Gaps = 30/687 (4%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 VK V++ + YL YA+S I RA+PD RDG KPV RRI++AM GL + K A Sbjct: 6 VKPVAIVDEMRTAYLDYAMSVIVSRALPDARDGLKPVQRRILYAMFREGLLHNVRYSKCA 65 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 +VGEV+ K HPHGD SVYD+LVRLAQP+ RYPL+ GQGNFG++DGD+AAAYRYTEAR+ Sbjct: 66 GVVGEVLKKYHPHGDASVYDALVRLAQPWNMRYPLVDGQGNFGSVDGDAAAAYRYTEARL 125 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 ++AE +L+ +D D V+F ++ EP+V P++ PNLL NG++GIAVGMAT+IP HN+ Sbjct: 126 KEIAEELLRDIDRDTVNFGPNFDGGYQEPLVLPARLPNLLLNGSAGIAVGMATNIPPHNL 185 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+C+ L+DNP+ ++E L+++I GPDFPTGG I+ + E I+ +Y GRG +RA+ Sbjct: 186 GELCDGIGYLVDNPDATVEDLIKFIPGPDFPTGGSILGT-EGIISAYSSGRGRILIRAKA 244 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFP 315 +EE RG++ IVVTE+PYQV K+RLIE+IAEL+ KRI + D+RDES +R+V+ Sbjct: 245 HIEEAARGAFHIVVTELPYQVNKARLIERIAELVKDKRIEGIRDVRDESDRSGIRMVIIL 304 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVL-SMGRVPQVMPLDGILKEWLAHRREVLFR 374 K + P ++ +F + M+T F NM L G+ P+ + L L+E++ HR+ V+ R Sbjct: 305 KQDA-QPKKVLNHLFKYTSMQTTFGANMLALVEDGKQPRTLSLKKALQEYIEHRQIVIRR 363 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAII---RNEDKPKPVMVSRFSLTENQVDAI 431 R+ + R IL+GL IA +DE+IA I R + + ++ F L+E Q AI Sbjct: 364 RTEHDLAKAKARAHILEGLKIALDQLDEVIATIRASRTAETARSNLMKNFKLSELQSQAI 423 Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491 L ++LR L LE +I+ E +L ++ +L+ ++ + I ++ E+KE + Sbjct: 424 LEMQLRRLAGLERKKIEDEYKEVLGTIADLEDILSKPERVFKIIKDDVAELKEKYGDV-- 481 Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DLSAL 543 RR+ + D +T + +I + V +++RG+I+ L + + + Sbjct: 482 ---RRSRIIADATGDIST--EDLIPDMNVLVTVTDRGYIKKLPGDTYRVQNRGGRGIKGM 536 Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL--LIDLNHNQD 601 KE D + L +T + +L + GK Y L + + + L LI L + Sbjct: 537 TTKEDDVVAHLLMCNTLNDLLFFTNRGKVYQLKVHEVPDASRTAKGLPLVNLISLEPGE- 595 Query: 602 IVTAFV----YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657 +VT+ + +D L++ + KG + SE + G + + + ++++ V Sbjct: 596 LVTSLIAVPDFDDGEYLVMTTVKGRIKRTKLSEYSSVRSNGLIAIGLDTGDELRWVKTSN 655 Query: 658 GDH-VAVVGENRKLLIFSIDQIPEMSR 683 GD + + ++ + + FS ++ M R Sbjct: 656 GDEDILMTTQHGQTIRFSQAEVRPMGR 682 >gi|83952094|ref|ZP_00960826.1| DNA gyrase subunit A [Roseovarius nubinhibens ISM] gi|83837100|gb|EAP76397.1| DNA gyrase subunit A [Roseovarius nubinhibens ISM] Length = 906 Score = 424 bits (1091), Expect = e-116, Method: Compositional matrix adjust. Identities = 245/605 (40%), Positives = 362/605 (59%), Gaps = 51/605 (8%) Query: 26 LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85 ++ YL YA+S I RAIPDLRDG KPVHRRI++AM E G ++KSAR VG+V+GK Sbjct: 7 MKTSYLDYAMSVIVSRAIPDLRDGLKPVHRRILYAMHETGNTHDKPYRKSARPVGDVMGK 66 Query: 86 LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145 HPHGD ++YD+LVR+AQ F PL+ GQGNFG++DGD+AAA RYTE RM + A +L Sbjct: 67 YHPHGDSAIYDALVRMAQDFSMSLPLLDGQGNFGSMDGDNAAAMRYTEVRMDKPASALLA 126 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 +++D V+F+D Y+ +D EP V P++FPN+L NG GIAVGMAT+IP HN+ E+ +A LA Sbjct: 127 DIEKDTVNFQDNYDGKDREPTVLPARFPNMLVNGAGGIAVGMATNIPPHNLGEVVDATLA 186 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265 LIDNP++S E+L++Y+ GPDFPTG I++ R ++Y GRG +RA+ VEE+ R Sbjct: 187 LIDNPDLSSEELIDYVPGPDFPTGAIML-GRSGARKAYLEGRGSVIIRAKTRVEEIRRDR 245 Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKNRSLDPDL 324 W IV+ EIPYQV K+ +IEKIAE KRI + ++DES + VR+V+ K R ++ Sbjct: 246 WAIVIDEIPYQVNKASMIEKIAEAAREKRIEGIAHVQDESDRNGVRVVVELK-RDATAEV 304 Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384 ++ +F + M+T F NM L+ GR P+ + L G L ++A R EV+ RR+++ ++ Sbjct: 305 VLNQLFRFTPMQTSFGCNMLALNGGR-PEQLTLRGFLTAFIAFREEVVARRTAYDLRKAR 363 Query: 385 RRVEILKGLLIAYLNIDEIIAIIRNE----DKPKPVMVSR-------------------- 420 R IL GL +A N+DE++A IR+ + + +M R Sbjct: 364 ERSHILCGLAVAVSNVDEVVATIRSSADAAEARQKLMERRWPAGDILEYIALIDDPTHRA 423 Query: 421 -----FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQI 475 ++L+E Q AIL LRL+ L +L ++ EL L A+ ++ ++L S ++ I Sbjct: 424 NDDGTYNLSETQARAILELRLQRLTQLGVKEVTDELQELAAKIKEYLAILASRERIMEII 483 Query: 476 ACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI----- 530 A E+REV++ F+ RRT E++ + +IE+E + V +++ G+I Sbjct: 484 ADELREVRDQFAVP-----RRT---EITDWSGDMDDEDLIEREEMVVTVTSGGYIKRTAL 535 Query: 531 ---RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RG 585 R+ K LS + KE D + A+T ++L +TDG AY L L G Sbjct: 536 ADFRAQKRGGKGLSGMQTKEEDVVTTLFVANTHTQLLFFTTDGMAYKLKTWRLPQGGRTA 595 Query: 586 HGEAI 590 G+AI Sbjct: 596 KGKAI 600 >gi|325287312|ref|YP_004263102.1| DNA gyrase subunit A [Cellulophaga lytica DSM 7489] gi|324322766|gb|ADY30231.1| DNA gyrase, A subunit [Cellulophaga lytica DSM 7489] Length = 851 Score = 424 bits (1091), Expect = e-116, Method: Compositional matrix adjust. Identities = 249/650 (38%), Positives = 385/650 (59%), Gaps = 40/650 (6%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 E + +++ ++ Y+ Y++S I RA+PD+RDG KPVHRR+++ M E+G+ +A KK Sbjct: 5 EKIIPINIEDEMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMHELGVRSNSAHKK 64 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 SARIVGEV+GK HPHGD SVYDS+VR+AQ + RY L+ GQGNFG+IDGDS AA RYTEA Sbjct: 65 SARIVGEVLGKYHPHGDTSVYDSMVRMAQEWSLRYMLVDGQGNFGSIDGDSPAAMRYTEA 124 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 RM ++A+ +L +++D VD + +++ EP V P++ PNLL NG SGIAVGMAT++P H Sbjct: 125 RMRKIADDMLADIEKDTVDHQLNFDDSLKEPTVLPARIPNLLVNGASGIAVGMATNMPPH 184 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 N+ E+ + +A IDN +I I++L+ +I PDFPTGGII + + E+++ GRG +RA Sbjct: 185 NLSEVVDGTVAYIDNKDIEIDELITHIKAPDFPTGGIIY-GYDGVREAFKTGRGRVVMRA 243 Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314 + EEV +G IVVTEIPYQV K+ +I+K A+LI K+I + IRDES + +++ Sbjct: 244 KATFEEV-QGRESIVVTEIPYQVNKADMIKKTADLINDKKIEGISTIRDESDRNGMRIVY 302 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 R P++++ ++F + ++T F +N L GR PQ++ + ++ ++ HR EV+ R Sbjct: 303 ILKRDAIPNIVLNTLFKYTALQTSFSVNNIALVNGR-PQLLNVKEMIHYFVEHRHEVVVR 361 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAI 431 R+ F ++ + R IL+GL+IA NIDE+IAIIR N D+ + ++ RF L+E Q AI Sbjct: 362 RTKFELKKAEDRAHILEGLIIASDNIDEVIAIIRGSSNADEARENLIKRFELSEIQAKAI 421 Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491 + +RLR L LE+ ++++E D ++ + +L + +++ I E+ EVKE + Sbjct: 422 VEMRLRQLTGLEQDKLRAEYDEIIKTIADLKDILANEERRMQIIKDELLEVKEKYGDE-- 479 Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSAL 543 RR+ E++ A + MI E + + IS+ G+I ++ V A Sbjct: 480 ---RRS---EINFAGGDLSIEDMIPDEQVVITISHAGYIKRTPLSEYKTQNRGGVGQKAS 533 Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKA-----YTLPAGNLLSGRGHGEAIQLLIDLNH 598 + D L+ +L + GK Y +P G+ S G AIQ LI++ Sbjct: 534 STRNEDFLEHLFVGTNHQYMLFFTQKGKCFWMRVYEIPEGSKTS---KGRAIQNLINIEQ 590 Query: 599 NQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE 648 + D V AF+ K + V +I T+KG T K S E+ Sbjct: 591 D-DKVMAFICTQDLK--------DEEYVNSHYVIMATKKG-TVKKTSLEQ 630 >gi|238759145|ref|ZP_04620314.1| DNA topoisomerase IV subunit A [Yersinia aldovae ATCC 35236] gi|238702693|gb|EEP95241.1| DNA topoisomerase IV subunit A [Yersinia aldovae ATCC 35236] Length = 471 Score = 424 bits (1091), Expect = e-116, Method: Compositional matrix adjust. Identities = 210/462 (45%), Positives = 318/462 (68%), Gaps = 8/462 (1%) Query: 12 LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71 L + + + L E YL Y++ I +RA+P + DG KPV RRI++AMSE+GL+ A Sbjct: 4 LTHDGAERLPLHTFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNNSAK 63 Query: 72 FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYR 130 FKKSAR VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S AA R Sbjct: 64 FKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMR 123 Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190 YTE+R+++ AE++L + + VD+ ++ EP + P++ PN+L NGT+GIAVGMAT Sbjct: 124 YTESRLSKYAEVLLGELGQGTVDWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATD 183 Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250 IP HNV+EI +A +ALID P S+++LLE++ GPDFPT I+ R+ I + Y+ GRG Sbjct: 184 IPPHNVREIAQAVIALIDKPATSLDELLEFVQGPDFPTEAEIITPRDEIRKIYQNGRGSV 243 Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-- 308 R+RA W E+ GS V+T +P+QV ++++E+IA + AK++P++ED+RDES + Sbjct: 244 RMRALWKKED---GS--AVITALPHQVSGAKVLEQIANQMRAKKLPMVEDLRDESDHENP 298 Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368 R+V+ P+ +D D +M +F +D+E + +NMN++ + P V L IL EWL R Sbjct: 299 TRLVIVPRTNRVDLDQVMNHLFATTDLERSYRINMNMIGLDHRPSVKGLLEILTEWLVFR 358 Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQV 428 R+ + R ++R++ + +R+ IL+GLLIA+LNIDE+I IIR ED+PKP+++ FS++E Q Sbjct: 359 RQTVRNRLNYRLEKVLKRLHILEGLLIAFLNIDEVIHIIRTEDEPKPLLMQHFSISETQA 418 Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQ 470 +AIL L+LR L KLEE +I+ E D L E++++ +LL S ++ Sbjct: 419 EAILELKLRHLAKLEEVKIRGEQDELAKERDQLQALLASERK 460 >gi|148654890|ref|YP_001275095.1| DNA gyrase subunit A [Roseiflexus sp. RS-1] gi|148567000|gb|ABQ89145.1| DNA gyrase subunit A [Roseiflexus sp. RS-1] Length = 823 Score = 424 bits (1091), Expect = e-116, Method: Compositional matrix adjust. Identities = 231/564 (40%), Positives = 351/564 (62%), Gaps = 22/564 (3%) Query: 30 YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89 YL YA+S I RA+PD RDG KPV RI++ M +MG+ FKK ARIVGE++GK+HPH Sbjct: 19 YLDYAMSVIVSRALPDARDGLKPVQTRILYGMWDMGIRANQPFKKCARIVGEILGKMHPH 78 Query: 90 GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDE 149 GD +VYD+LVRLAQP+ RYPL+ GQGNFG+IDGD AA RYTEAR+T +AE +L +++ Sbjct: 79 GDSAVYDALVRLAQPWNMRYPLVEGQGNFGSIDGDPPAAMRYTEARLTPIAEEMLADIEK 138 Query: 150 DAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDN 209 + VDFRD ++ EPVV P++ PNLL NG +GIAVGMAT+IP HN+ E+C+A LIDN Sbjct: 139 NTVDFRDNFDGLYREPVVLPARIPNLLLNGAAGIAVGMATNIPPHNLNEVCDAITHLIDN 198 Query: 210 PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIV 269 P+ +IE L + GPDFPT G+I+ + E I+ +Y GRG +RA+ +EE RG++ IV Sbjct: 199 PDATIEDLARIMPGPDFPTAGMILGT-EGIMNAYSTGRGHITIRAKAHIEEAARGAFHIV 257 Query: 270 VTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKNRSLDPDLLMES 328 VTE+PYQV K+RL E+IAEL ++I + D+RDES +R+V+ K + P ++ + Sbjct: 258 VTELPYQVNKARLQERIAELARDRKIEGIRDVRDESDRSGMRLVIILKQDA-QPKKVLNA 316 Query: 329 IFMLSDMETRFPLNMNVL-SMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRV 387 ++ + M+T F +NM L GR P+++ L +L+E++ HRREV+ RR+ F + R Sbjct: 317 LYKHTQMQTTFGVNMLALVEGGRQPRLLTLKRLLQEYIDHRREVIRRRTEFDLDKARARA 376 Query: 388 EILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEE 444 IL+GL IA N+D +IA IRN D + +++ F+L+E Q +AIL ++L L LE Sbjct: 377 HILEGLKIAIDNLDAVIATIRNSRSRDHARTNLMNGFALSEAQANAILEMQLGRLAALER 436 Query: 445 YQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSR 504 +I+ E ++ +++ +L + ++ + I ++ ++K + RRT + Sbjct: 437 QRIEEEYREVIQLIGELEDILANPRKILHLIKQDLADLKAKYGDP-----RRTRI--IPD 489 Query: 505 ADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALH 556 AD + +I + + +++RG++ R+ + + +E D ++ L Sbjct: 490 ADGEVSDEDLIPDVRVLITLTDRGYVKRQSPDIYRTQRRGGRGIRGATIREQDVVRHILA 549 Query: 557 AHTTDRILLLSTDGKAYTLPAGNL 580 A T D +L + GK Y + A L Sbjct: 550 ASTMDDLLFFTDRGKVYQIKAHEL 573 >gi|312109157|ref|YP_003987473.1| DNA gyrase subunit alpha [Geobacillus sp. Y4.1MC1] gi|311214258|gb|ADP72862.1| DNA gyrase, A subunit [Geobacillus sp. Y4.1MC1] Length = 824 Score = 424 bits (1091), Expect = e-116, Method: Compositional matrix adjust. Identities = 224/568 (39%), Positives = 357/568 (62%), Gaps = 20/568 (3%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 ++ V++ + +L YA+S I RA+PD+RDG KPVHRRI++AM ++G+ +KKSA Sbjct: 9 IREVNISQEMRSSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMHDLGMTADKPYKKSA 68 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 RIVGEVIGK HPHGD +VYD++VR+AQ F RY L+ G GNFG+IDGD+AAA RYTEARM Sbjct: 69 RIVGEVIGKYHPHGDAAVYDTMVRMAQDFNYRYMLVDGHGNFGSIDGDAAAAMRYTEARM 128 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 +++A +L+ +++D +D++D Y+ + EPVV PS+FPNLL NG+SGIAVGMAT+IP H + Sbjct: 129 SKIAMEMLRDINKDTIDYQDNYDGSEKEPVVLPSRFPNLLVNGSSGIAVGMATNIPPHQL 188 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ +A LAL NP++++ L+E+I GPDFPT G I+ R I ++Y GRG +RA+ Sbjct: 189 GEVIDAILALSKNPDMTVADLMEHIPGPDFPTAGQII-GRSGIRKAYETGRGSITLRAKA 247 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316 +E+ G I+V E+PYQV K++LIE+IAEL+ K+I + D+RDES ++ Sbjct: 248 EIEQQPNGKEMIIVRELPYQVNKAKLIERIAELVREKKIDGITDLRDESDRSGMRIVIEV 307 Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376 + + +++ +++ + M+T F +NM L G+ P+V+ L L+ +L H++ V+ RR+ Sbjct: 308 RKDANAKVILNNLYKHTAMQTSFGINMLALVDGQ-PKVLNLKECLQHYLDHQKTVIRRRT 366 Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAILN 433 ++ ++ + R IL+GL IA +DE+I +IR+ + ++ +FSL+E Q AIL+ Sbjct: 367 AYELKKAEARAHILEGLRIALDYLDEVINLIRSSKTTEIAREGLMQQFSLSERQAQAILD 426 Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493 +RL+ L LE +I+ E L+ ++ ++L ++ I E+ E+KE F+ Sbjct: 427 MRLQRLTGLEREKIEQEYQELIRLIAELKAILADEEKVLQIIRDELTEIKERFNDE---- 482 Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSVDLSALHF 545 RRT V+ + + +I +E I + ++++G+I+ L K + +H Sbjct: 483 -RRTEI--VAGGAEEFEDEDLIPRENIVITLTHKGYIKRLPVSTYKSQKRGGRGVQGMHT 539 Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAY 573 E D ++ L T D +L + GK Y Sbjct: 540 NEDDFVEHLLITSTHDTVLFFTNKGKVY 567 >gi|291278437|ref|YP_003495272.1| DNA gyrase subunit A [Deferribacter desulfuricans SSM1] gi|290753139|dbj|BAI79516.1| DNA gyrase, A subunit [Deferribacter desulfuricans SSM1] Length = 802 Score = 424 bits (1090), Expect = e-116, Method: Compositional matrix adjust. Identities = 253/648 (39%), Positives = 390/648 (60%), Gaps = 43/648 (6%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 E+ + V++ +L++ YL YA+S I RA+PD+RDG KPVHRR+++AM EMG+ +K Sbjct: 3 EKGIIEVNIEDSLKDSYLDYAMSVIIGRALPDVRDGLKPVHRRVLYAMYEMGVLHNKPYK 62 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSARIVG+VIGK HPHGD +VYD+LVR+AQ F RYPL+ GQGNFG+IDGDSAAA RYTE Sbjct: 63 KSARIVGDVIGKYHPHGDSAVYDTLVRMAQDFSMRYPLVDGQGNFGSIDGDSAAAMRYTE 122 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 RMT++AE +L +D+D VDF Y+ EPVV P++ PN+L NGTSGIAVGMAT+IP Sbjct: 123 VRMTKIAEEMLSDIDKDTVDFSPNYDGSLKEPVVLPTRIPNMLINGTSGIAVGMATNIPP 182 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E+ +A + +IDNP + E++L +I GPDFPT GII ++ I+++Y+ G+G +VR Sbjct: 183 HNLTEVIDALVYIIDNPSNTDEEILNFIKGPDFPTYGIIY-GKDEILKAYKTGKGVIKVR 241 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIV 312 A+ E G +VVTE+PYQV K+ LIEKIA L K+I + D+RDES D +RIV Sbjct: 242 AKVKKEITTTGKELLVVTELPYQVNKANLIEKIANLARDKKINGIVDLRDESDRDGIRIV 301 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 + K R + D+++ ++ + ME + +N+ V + P+ + L +L+++L HR+ V+ Sbjct: 302 IELK-RGENADIIINQLYKFTQMEIAYGINL-VGIVNNKPKTLTLRDLLEQFLEHRKVVV 359 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAII---RNEDKPKPVMVSRFSLTENQVD 429 RR+ F ++ + R+ IL+GL+ A NIDE++A+I +N + K +++RF L++ Q Sbjct: 360 IRRTKFLLKKAEDRLHILEGLIKAVENIDEVVALIKSSKNAAEAKEKLMNRFELSDKQAQ 419 Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489 AIL++RL L LE ++++E L E S+LN+ I E+ ++K + Sbjct: 420 AILDMRLHRLTGLEIEKLRNEYKETLKNIEFYKSILNNKSVLMGIIKEELIDIKNKYGDE 479 Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR-----SLKSHSV----DL 540 RRT V+ +++ ++ +I + + V +S +G+I+ + KS Sbjct: 480 -----RRTQI--VNSSEEINIED-LIPDDEVVVTLSYQGFIKRTPLSNFKSQKRGGKGKT 531 Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLID 595 A + KE D +K L ++ + G K Y LP L+ G+ I LI Sbjct: 532 GAGNVKE-DFIKDILVTTNHSTLMFFTNKGRIHYLKVYELPE---LARDAKGKYIANLIS 587 Query: 596 LNHNQDIVTA----------FVYDSTCKLLVVSSKGNAFIVEESEIIA 633 L+ ++ + +++ T + +V + +AF S IIA Sbjct: 588 LDKDEKVAAMISTKEFDRDRYIFMCTKEGIVKKTSLDAFSSGRSGIIA 635 >gi|88802494|ref|ZP_01118021.1| DNA gyrase A subunit [Polaribacter irgensii 23-P] gi|88781352|gb|EAR12530.1| DNA gyrase A subunit [Polaribacter irgensii 23-P] Length = 848 Score = 424 bits (1090), Expect = e-116, Method: Compositional matrix adjust. Identities = 241/641 (37%), Positives = 381/641 (59%), Gaps = 39/641 (6%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 E + +++ ++ Y+ Y++S I RA+PD+RDG KPVHRR++ M E+G+ ++KK Sbjct: 5 EKLIPINIEEQMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLFGMHELGIKATGSYKK 64 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 SARIVGEV+GK HPHGD SVYDS+VR+AQ + RY ++ GQGNFG++DGDS AA RYTE Sbjct: 65 SARIVGEVLGKFHPHGDTSVYDSMVRMAQSWSVRYMMVDGQGNFGSVDGDSPAAMRYTEV 124 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 RM +++E +L +++D VD R +++ EPVV P++ PNLL NG SGIAVGMAT++ H Sbjct: 125 RMQKISEDMLADIEKDTVDQRLNFDDTLHEPVVLPTRIPNLLVNGASGIAVGMATNMAPH 184 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 N+ E+ LA IDN EI I++L++YI PDFPTGGII + + +++ GRG +RA Sbjct: 185 NLTEVINGTLAYIDNREIDIDELMQYITAPDFPTGGIIY-GYDGVKDAFHTGRGRIVMRA 243 Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314 + +EEV +G CI+V+EIPYQV K+ +I+K AEL+ K+I + +IRDES + +++ Sbjct: 244 KSVIEEV-KGRECIIVSEIPYQVNKAEMIKKTAELVNEKKIEGISNIRDESDRNGMRIVY 302 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 R P++++ +F + ++T F +N L GR P+ + L ++ ++ HR EV+ R Sbjct: 303 VLKRDAIPNIVLNKLFKYTQLQTSFSVNNIALVKGR-PEQLNLKQLIHYFVEHRHEVVVR 361 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAI 431 R+ F + + R IL+GL+IA NIDE+IA IR N D+ + +++RF LTE Q AI Sbjct: 362 RTKFDLLKAEARAHILEGLIIASDNIDEVIATIRASQNADEAREKLIARFELTEIQAKAI 421 Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491 + +RLR L LE+ ++++E D ++ + +L + +++ I E+ +K+ + Sbjct: 422 VEMRLRQLTGLEQDKLRAEFDAIMTTIVDLKDILANEPRRYEIIKGELAHIKDKY----- 476 Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSVDLSALHFKEG- 548 G R + E + D + + MI + V ISN G+++ +L+ + V ++G Sbjct: 477 -GDDRRSVIEYAGGDMSI--EDMIPDTKVVVTISNAGYLKRTNLEEYKVQNRGGRGQKGA 533 Query: 549 -----DSLKIALHAHTTDRILLLSTDGK-----AYTLPAGNLLSGRGHGEAIQLLIDLNH 598 D L+ ++ + GK Y +P G G A+Q LI++ Sbjct: 534 TTRNEDFLEHLFVGTNHQYMMFFTQKGKVFWMRVYEIPEG---GKNTKGRAMQNLINIEQ 590 Query: 599 NQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGK 639 + D V AF L+ K A+I I+A T+KG+ Sbjct: 591 D-DKVKAF-------LVTQDLKDEAYINSHYVIMA-TKKGQ 622 >gi|126179354|ref|YP_001047319.1| DNA gyrase, A subunit [Methanoculleus marisnigri JR1] gi|125862148|gb|ABN57337.1| DNA gyrase subunit A [Methanoculleus marisnigri JR1] Length = 811 Score = 424 bits (1090), Expect = e-116, Method: Compositional matrix adjust. Identities = 241/603 (39%), Positives = 373/603 (61%), Gaps = 24/603 (3%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 E V +++ ++ Y+ YA+S I RAIPD RDG KPVHRR ++AM EMG +KK Sbjct: 6 EGVVPINIEEEMKSCYIDYAMSVIIGRAIPDARDGLKPVHRRTLYAMWEMGNTSDKPYKK 65 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 SARIVG+V+GK HPHGD ++YD+LV++AQPF R L+ GQGNFG+IDGDSAAA RYTEA Sbjct: 66 SARIVGDVMGKYHPHGDSAIYDTLVKMAQPFSYRCMLVDGQGNFGSIDGDSAAAMRYTEA 125 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 R+T+++E +L +D+ VDF ++E EP V P++ PNLL NG+SGIAVGMAT++P H Sbjct: 126 RLTKISEELLTDIDKKTVDFVPNFDESLQEPSVLPARIPNLLVNGSSGIAVGMATNMPPH 185 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 N++E+CEA +ID+ S E+L++ + GPDFPTGGI++ + I ++Y GRG VR Sbjct: 186 NLREVCEATCRVIDDAGTSTEELMQVMPGPDFPTGGIMMGT-AGIRDAYLTGRGKCVVRG 244 Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314 +EE GR + I++TEIP+QV K+RLIE IA L+ KRI + DIRDES D ++ Sbjct: 245 VAEIEEEGR-TPQIIITEIPFQVNKARLIEHIASLVRDKRIEGIGDIRDESDRDGMRIVV 303 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 R P +++ ++ + +E+ F + +N+ + R P+ + L I+ E+L HR +V+ R Sbjct: 304 ELKRGAAPQVILNFLYKHTALESSFGI-INLAIVDRQPRTLNLKEIIHEFLKHRVDVVRR 362 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAI 431 R+ F + + R+ IL+GLL+A NID +IA IR D+ + +V++F+L E Q DAI Sbjct: 363 RTEFDLTKNEERMHILRGLLVALDNIDAVIATIRGSGTTDEAQKALVAKFALDEVQADAI 422 Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491 L ++LR L LE +I E D + AE E++ ++L S I EI+ KE+ Sbjct: 423 LKMQLRRLAALEHQKILDERDAIAAEIERLSAILAS----EASILAEIK--KELVDIGAR 476 Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSAL 543 G R T +++A +A ++ +IE +P+ V +++ ++ R+ + + + Sbjct: 477 FGDERRT--RIAQAAEAFDREDLIEDKPVLVSLTSSNYVKRIDLDTYRNQRRGGHGVIGM 534 Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQD 601 K+ D ++ A+ D +L + G+ Y L +L G+ G G+A+ L++L+ + Sbjct: 535 ATKDNDGVEKVFVANMHDNLLCFTDRGRMYWLKIYDLPEGQRTGKGKALVNLLNLDGEER 594 Query: 602 IVT 604 + T Sbjct: 595 VTT 597 >gi|284041477|ref|YP_003391817.1| DNA gyrase subunit alpha [Conexibacter woesei DSM 14684] gi|283945698|gb|ADB48442.1| DNA gyrase, A subunit [Conexibacter woesei DSM 14684] Length = 883 Score = 424 bits (1090), Expect = e-116, Method: Compositional matrix adjust. Identities = 266/726 (36%), Positives = 417/726 (57%), Gaps = 40/726 (5%) Query: 6 ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65 +S ++ L N++ +L + YL YA+S I RA+PD+RDG KPVHRR++ AM+EMG Sbjct: 1 MSATDQLSGGNIEPRALEEEMRSAYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNEMG 60 Query: 66 LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125 + KS+RIVGEV+GK HPHGD S+YD+LVR+AQ F R+ L+ GQGNFG++D D Sbjct: 61 VQPNRPRAKSSRIVGEVMGKYHPHGDASIYDTLVRMAQDFSMRHLLVDGQGNFGSVDDDP 120 Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185 AAA RYTEAR+ ++A +L+ +D D VDF Y+ ++ EP+V P++FPNLL NG+SGIAV Sbjct: 121 AAAMRYTEARLARIATEMLRDIDADTVDFGPNYDGKNQEPLVLPARFPNLLVNGSSGIAV 180 Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245 GMAT+IP HN++E A +A I+NPEI ++ L+++I GPDFPT G I+ I ++Y Sbjct: 181 GMATNIPPHNLRETIAATIAYIENPEIDVDGLMQHIRGPDFPT-GGIILGVGGIRDAYAT 239 Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQK---SRLIEKIAELIIAKRIPLLEDIR 302 GRG RV+AR +E + +G IVVTE+PYQV+K LI+KIA+L+ K+IP + D+R Sbjct: 240 GRGRVRVQARAHIEPLSQGKEAIVVTELPYQVKKGGDGGLIQKIADLVHEKKIPEITDLR 299 Query: 303 DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362 DES + R + P +++ ++ + M+T F +NM L + VP+ + L ++ Sbjct: 300 DESDRHGMRFVIELKRDVLPKVVLNKLYKHTPMQTTFGVNMVAL-VDNVPKTLSLREVIG 358 Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVS 419 ++ H+REV+ RR+ + ++ + R IL+GLLIA NIDE+IAIIR + ++ + +V+ Sbjct: 359 RYVDHQREVIVRRTKYELRRAEDRAHILEGLLIAQANIDEVIAIIRRSSDREQARINLVN 418 Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479 RF L+E Q +AIL + L L LE +++ E +L+ ++ +L +Q I E+ Sbjct: 419 RFELSERQAEAILQMTLGRLTALEVDKLRQEHADLMERIRELREILGDEDRQMAIIKEEL 478 Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL------ 533 +E+ + + RRT +S A+ + +I + + + I+ G+I+SL Sbjct: 479 QEISDAYGNE-----RRTA---ISYAEGEIDIEDLIADQQMVITITKTGYIKSLPLATYR 530 Query: 534 --KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEA 589 + V ++ + K+GD ++ T D +L + GK Y L S G A Sbjct: 531 QQRRGGVGVTGMDMKDGDYIEHLFVTSTHDFLLFFTNRGKVYRSKVYELPEASRTAKGRA 590 Query: 590 IQLLIDLNHN---QDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIA-NT---RKGKTFL 642 + ++ L Q +++ + LL + KG V+++E+ A NT G + Sbjct: 591 LVNILPLREGERVQSVLSTRDFSEAPYLLFATRKGT---VKKTELQAYNTPIKADGIIAI 647 Query: 643 KVSSEEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDV 700 K+ ++++ V +V GD V +V + FS M R GVR D G +V Sbjct: 648 KIRDDDELVAVRRVDEGDEVIIVSRAGLTVRFSEQDARSMGRDTSGVRGMDVGDSG--EV 705 Query: 701 ICFKIC 706 I I Sbjct: 706 IAMDIA 711 >gi|208434615|ref|YP_002266281.1| DNA gyrase subunit A [Helicobacter pylori G27] gi|208432544|gb|ACI27415.1| DNA gyrase subunit A [Helicobacter pylori G27] Length = 833 Score = 424 bits (1090), Expect = e-116, Method: Compositional matrix adjust. Identities = 249/626 (39%), Positives = 384/626 (61%), Gaps = 43/626 (6%) Query: 4 DNISNSNTLVE-ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62 DN N++ E +N+ V + ++EE YLAY++S I RA+PD RDG KPVHRRI++AM Sbjct: 3 DNSVQDNSVNETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMH 62 Query: 63 EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122 E+GL A+KKSARIVG+VIGK HPHGD +VYD+LVR+AQ F R L+ GQGNFG+ID Sbjct: 63 ELGLTSKVAYKKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSID 122 Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182 GD+AAA RYTEARMT+ +E IL+ +D+D +DF Y++ EP + PS+ PNLL NG +G Sbjct: 123 GDNAAAMRYTEARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANG 182 Query: 183 IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242 IAVGMATSIP H + EI +A +++NP +++++LE++ GPDFPTGGII + IVE+ Sbjct: 183 IAVGMATSIPPHRIDEIIDALAHVLENPNAALDEILEFVKGPDFPTGGIIY-GKAGIVEA 241 Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302 Y+ GRG +VRA+ VE+ + IV+ E+P+Q K++L+E+I++L K+I + ++R Sbjct: 242 YKTGRGRVKVRAKVHVEKT-KNKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVR 300 Query: 303 DES-AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361 DES E +R+V+ K ++ ++++ ++ L+ MET F + + + + P++ L +L Sbjct: 301 DESDREGIRVVIELKRDAM-SEIVLNHLYKLTTMETTFSIILLAI-YNKEPKIFTLLELL 358 Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMV 418 + +L HR+ ++ RR+ F ++ R IL+G LIA NIDEI+ +I+ P K ++ Sbjct: 359 RLFLNHRKTIIIRRTIFELEKAKARAHILEGYLIALDNIDEIVQLIKTSQSPEAAKNALM 418 Query: 419 SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE 478 RF+L+E Q AIL +RL+ L LE +IK E NLL + ++ +L S + + E Sbjct: 419 ERFTLSEIQSKAILEMRLQRLTGLERDKIKEEYQNLLELIDDLNGILKSEDRLNGVVKTE 478 Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV 538 + EVKE FS R T E+ + + + +I EP+ V +S +G+++ V Sbjct: 479 LLEVKEQFSSP-----RHT---EIQESYENIDIEDLIANEPMVVSMSYKGYVK-----RV 525 Query: 539 DLSALHFK-------------EGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNL 580 DL A + E D ++ A+T D +L ++ G K Y +P + Sbjct: 526 DLKAYEKQNRGGKGKLSGSTYEDDFIENFFVANTHDILLFITNKGQLYHLKVYKIPEASR 585 Query: 581 LSGRGHGEAIQLLIDLNHNQDIVTAF 606 ++ G+AI LI L ++ I+ Sbjct: 586 IA---MGKAIVNLISLAPDEKIMATL 608 >gi|192360085|ref|YP_001982590.1| DNA gyrase subunit A [Cellvibrio japonicus Ueda107] gi|190686250|gb|ACE83928.1| DNA gyrase, A subunit [Cellvibrio japonicus Ueda107] Length = 883 Score = 424 bits (1090), Expect = e-116, Method: Compositional matrix adjust. Identities = 274/768 (35%), Positives = 410/768 (53%), Gaps = 114/768 (14%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 VS+ L++ YL YA+S I RA+PD+RDG KPVHRR++ AMSE+ D+ +KKSAR+V Sbjct: 11 VSIEDELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELNNDWNKPYKKSARVV 70 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG+IDGD+AAA RYTE RM ++ Sbjct: 71 GDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDNAAAMRYTEIRMAKI 130 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A ++ +D++ VDF Y+ + P V P++ PNLL NG+SGIAVGMAT+IP HN+ E+ Sbjct: 131 AHDLMADLDKETVDFVPNYDGTEQIPAVLPTRIPNLLVNGSSGIAVGMATNIPPHNLGEV 190 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 LA++DNP+I+I++L+EYI GPDFPTG II R IVE+YR GRG +RA+ +E Sbjct: 191 VRGCLAMVDNPDITIDELMEYIPGPDFPTGAII-NGRAGIVEAYRTGRGRVVMRAKAEIE 249 Query: 260 -EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKN 317 + G I+VTEIPYQ+ K+RLIE+IAEL+ K++ + ++RDES +D +RIV+ K Sbjct: 250 TDAKTGRETIIVTEIPYQINKARLIERIAELVKEKKVEGISELRDESDKDGMRIVIEVK- 308 Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377 ++ D+L+ ++F + ++T F +NM L G+ P+++ L +L+ ++ HRREV+ RR+ Sbjct: 309 KTESGDVLLNNLFAQTQLQTTFGVNMVALDDGQ-PKLLNLKDMLEAFIRHRREVVTRRTV 367 Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP------------------------ 413 + ++ R IL+GL +A NIDE+I +I+ P Sbjct: 368 YLLRKARERGHILEGLAVAIANIDEVIELIKRSPSPAEAKESLQARGWAADSVLPFLERA 427 Query: 414 -----KP--------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEK 460 +P V+ R+ L+ Q AIL+LRL L +E ++ +E D+ + E + Sbjct: 428 GDNACRPEDLEGNYGVIDGRYYLSAAQAQAILDLRLHRLTGMEHDKLLAEYDDKIKEIAE 487 Query: 461 IDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI 520 +L + + I E+ +V D G R T S D T + +I E Sbjct: 488 YLEILGNAIRLMEVIRAELEQV------IADFGDARRTEIIASSLDLTT--EDLIAVEDR 539 Query: 521 TVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKA 572 V IS+ G+ +S + + SA K+ D ++ L A T D IL ++ GK Sbjct: 540 VVTISHGGYAKSQPLADYQAQRRGGMGKSATAVKDEDFVEHLLIASTHDTILCFTSVGKV 599 Query: 573 YTLP------AGNLLSGRG--------HGEAIQLL------------------------- 593 Y+L AG GR GE I + Sbjct: 600 YSLKVYMIPEAGRQSRGRPVVNLLPLEEGERITSILPVKSYDNDHFIFMATRKGTVKKTV 659 Query: 594 --------------IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGK 639 I+L+ +V V + C +++ SS G A ES++ A R + Sbjct: 660 LTEFQSLRANGKRAIELDEGDTLVGTAVTNGACDVILFSSSGKAARFRESQVRAMGRSSR 719 Query: 640 TFLKVSSEEK---MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRG 684 + E + +V+ + G V V EN +D+ P RG Sbjct: 720 GVRGIRIAEGQFIVGMVIPLAGGQVLTVSENGYGKRTPVDEFPAKGRG 767 >gi|295406870|ref|ZP_06816674.1| hypothetical protein SMAG_02043 [Staphylococcus aureus A8819] gi|294968335|gb|EFG44360.1| hypothetical protein SMAG_02043 [Staphylococcus aureus A8819] Length = 889 Score = 424 bits (1090), Expect = e-116, Method: Compositional matrix adjust. Identities = 242/614 (39%), Positives = 375/614 (61%), Gaps = 30/614 (4%) Query: 26 LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85 + E +L YA+S I RA+PD+RDG KPVHRRI++ ++E G+ ++KKSARIVG+V+GK Sbjct: 18 MRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDKSYKKSARIVGDVMGK 77 Query: 86 LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145 HPHGD S+Y ++VR+AQ F RYPL+ GQGNFG++DGD AAA RYTEARMT++ +L+ Sbjct: 78 YHPHGDLSIYKAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEARMTKITLELLR 137 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 +++D +DF D Y+ + EP V P++FPNLLANG SGIAVGMAT+IP HN+ E+ L+ Sbjct: 138 DINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATNIPPHNLTELINGVLS 197 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265 L NP+ISI +L+E I GPDFPT G+I+ + I +Y GRG ++R+R +EE G G Sbjct: 198 LSKNPDISIAELMEDIEGPDFPTAGLIL-GKSGIRRAYETGRGSIQMRSRAVIEERGGGR 256 Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA--EDVRIVLFPKNRSLDPD 323 IVVTEIP+QV K+R+IEKIAEL+ K+I + D+RDE++ VR+V+ + + + Sbjct: 257 QRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRVVIDVR-KDANAS 315 Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383 +++ +++ + ++T F +NM L GR P+++ L L +L H++ V+ RR+ + ++ Sbjct: 316 VILNNLYKQTPLQTSFGVNMIALVNGR-PKLINLKEALVHYLEHQKTVVRRRTQYNLRKA 374 Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVDAILNLRLRSLR 440 R IL+GL IA +IDEII+ IR D K M S RF L+E Q AIL++RLR L Sbjct: 375 KDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQRFKLSEKQAQAILDMRLRRLT 434 Query: 441 KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500 LE +I++E + LL +++++L + + E+ E+++ F RRT Sbjct: 435 GLERDKIEAEYNELLNYISELETILADEEVLLQLVRDELTEIRDRFGDD-----RRT--- 486 Query: 501 EVSRADKATLQ-QAMIEKEPITVVISNRGWIRSLKSHSV--------DLSALHFKEGDSL 551 E+ L+ + +I +E I + +S+ +I+ L + + ++ E D + Sbjct: 487 EIQLGGFEDLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRAQNRGGRGVQGMNTLEEDFV 546 Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAFV-- 607 + T D +L + G+ Y L + LS + G + I+L +++ I T Sbjct: 547 SQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIELENDEVISTMIAVK 606 Query: 608 -YDSTCKLLVVSSK 620 +S LV ++K Sbjct: 607 DLESEDNFLVFATK 620 >gi|293376412|ref|ZP_06622646.1| DNA gyrase, A subunit [Turicibacter sanguinis PC909] gi|325839310|ref|ZP_08166776.1| DNA gyrase, A subunit [Turicibacter sp. HGF1] gi|292644968|gb|EFF63044.1| DNA gyrase, A subunit [Turicibacter sanguinis PC909] gi|325490592|gb|EGC92907.1| DNA gyrase, A subunit [Turicibacter sp. HGF1] Length = 833 Score = 424 bits (1090), Expect = e-116, Method: Compositional matrix adjust. Identities = 257/714 (35%), Positives = 412/714 (57%), Gaps = 51/714 (7%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 + VK ++ ++ ++ YA+S I RA+PD+RDG KPVHRRI+++M+++G+ +KK Sbjct: 5 DQVKPHNIAKEMKTSFIDYAMSVIVSRALPDVRDGLKPVHRRILYSMNDLGMHSDKPYKK 64 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 SARIVG+VI K HPHGD SVYD++VR+AQ F RYPL+ G GNFG+IDGD AAA RYTEA Sbjct: 65 SARIVGDVIAKYHPHGDSSVYDAMVRMAQDFSYRYPLVDGHGNFGSIDGDGAAAMRYTEA 124 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 RM+++A +++ ++++ +DF+ ++ E+ EPVV P++FP+LL NGT+GIAVGMAT+IP H Sbjct: 125 RMSKLAMEMMRDINKNTIDFQPNFDGEEHEPVVLPARFPSLLVNGTTGIAVGMATNIPPH 184 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 N+ E+ A LA ++NPEI + L+E+I GPD PTG +I+ ++ I +Y G G +R+ Sbjct: 185 NLTEVINACLAYMENPEIDVLGLMEHIKGPDLPTGALILGTK-GIRNAYETGNGSIMMRS 243 Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314 + + E G + I+VTEIPYQV + RLIEKIAEL+ KR+ + D+R+ES + ++ Sbjct: 244 KCEIIEGHGGKYSILVTEIPYQVNRERLIEKIAELVKEKRLDGITDLRNESNREGTRIVI 303 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 + ++P +++ ++F L+ ++ + +NM L G+ P+V+ L I+ ++ H+ EV+ R Sbjct: 304 ELRKDVNPQVMLNNLFKLTQLQVSYGINMLALQDGQ-PKVLNLKEIIAAYIKHQVEVIVR 362 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAI 431 R+ F + + R IL+G IA +ID IIAIIR N+++ ++S FS +E Q AI Sbjct: 363 RTQFDLNKAEDRAHILEGFRIALDHIDRIIAIIRGSSNDEEALNNLISEFSFSERQGKAI 422 Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491 L +RLR L LE +I+ E NL+ + +L + + I E+ EV + D Sbjct: 423 LEMRLRRLTGLERDKIEDEYQNLVTLIADLKDILANEYRVHGIIRDELTEV--MIKHGDD 480 Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSAL 543 RRT S D + +I +E + + ++N G+I RS + + Sbjct: 481 ---RRTEIVRGSDFDIE--DEDLIPEEQVIITLTNNGYIKRQPISTYRSQNRGGRGVQGM 535 Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGR-GHGEAIQLLIDLN 597 + D +K L T D +L + G KAYT+P GR G I +I++ Sbjct: 536 GTHDDDYVKELLSTSTHDYLLFFTNKGKVYQKKAYTIPE----YGRTAKGLPIVNIIEIA 591 Query: 598 HNQDIV----------TAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR-KGKTFLKVSS 646 +++I F++ +T +V + +AF N R G L + Sbjct: 592 QDEEISAIIPVKEFNENEFLFFATRTGVVKRTTLSAF--------GNIRTNGLIALSLRE 643 Query: 647 EEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGIS 698 ++++ V K TG + + + KL+ F DQ+ M R GVR + ++G ++ Sbjct: 644 DDELIGVRKTTGSNDIVIASSGGKLVWFEEDQVRSMGRTAAGVRGINLEEGEVA 697 >gi|23097462|ref|NP_690928.1| DNA gyrase subunit A [Oceanobacillus iheyensis HTE831] gi|22775685|dbj|BAC11963.1| DNA gyrase subunit A [Oceanobacillus iheyensis HTE831] Length = 837 Score = 424 bits (1090), Expect = e-116, Method: Compositional matrix adjust. Identities = 263/770 (34%), Positives = 430/770 (55%), Gaps = 59/770 (7%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 V +++ + +L YA+S I RA+PD+RDG KPVHRRI++AM+++G+ A+KKSA Sbjct: 9 VSEINISNEMRTSFLDYAMSVIVARALPDVRDGMKPVHRRILYAMNDLGMHSDKAYKKSA 68 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 RIVGEVIGK HPHGD +VY+++VR+AQ F RY L+ G GNFG++DGDSAAA RYTEARM Sbjct: 69 RIVGEVIGKYHPHGDSAVYETMVRMAQTFSYRYMLVDGHGNFGSVDGDSAAAMRYTEARM 128 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 ++++ +L+ +++D +D++D Y+ + EPVVFP++FPNLL NGTSGIAVGMAT+IP H++ Sbjct: 129 SKISMELLRDINKDTIDYQDNYDGTEREPVVFPARFPNLLVNGTSGIAVGMATNIPPHHL 188 Query: 197 QEICEAALALIDNPEISIEKLLE-YIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 E +A LA+ NP+I+I++++E ++ GPDFPT G I+ R I ++Y G+G +RA+ Sbjct: 189 GETIDAVLAISQNPDITIDEIMENHLPGPDFPTAGQIL-GRSGIRKAYETGKGSITIRAK 247 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315 +E+ I+VTE+PYQV K++LIEKIAEL+ K++ + D+RDES + ++ Sbjct: 248 LNIEQGKNDKETIIVTELPYQVNKAKLIEKIAELVRDKKVEGITDLRDESDRNGMRIVIE 307 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 R + ++++ +++ + ++T F +NM L G+ P+V+ + L +L H++ ++ RR Sbjct: 308 LRRDANANVVLNNLYKHTSLQTTFGINMLALVDGQ-PRVLNIKQCLSYYLEHQKVIIKRR 366 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAIL 432 + F + + R IL+GL IA ++DE+I +IR+ D + ++ RF L+E Q AIL Sbjct: 367 TQFELNKAEARAHILEGLRIALDHLDEVIELIRSSKTADIAREGLMERFKLSEKQAQAIL 426 Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492 ++RL+ L LE +I+ E L A E++ ++L ++ I E+ E+KE + + Sbjct: 427 DMRLQRLTGLEREKIEDEYKELQALIEELKAILADEEKVLEIIREELTEIKEKYKED--- 483 Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DLSALH 544 RRT V+ + +I +E I + ++++G+I+ L + + + + Sbjct: 484 --RRTEI--VAGGAGFFEDEDLIPEENIVITLTHQGYIKRLPASTYRTQKRGGRGIQGMG 539 Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLLSGRGHGEA 589 E D ++ + T D IL + GK Y +P NLL GE Sbjct: 540 TNEDDFVEHLVSTSTHDTILFFTNKGKVYKAKGYEIPEFSRTAKGIPIINLLQVE-KGEW 598 Query: 590 IQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649 + +I +N +D L + G A E N RKG EE Sbjct: 599 VNAVISVNQ---------FDEEAYLFFTTKHGIAKRT-SLEKFRNIRKGGLIAVGLREED 648 Query: 650 MKLVVKVTGDH--VAVVGENRKLLIFSIDQIPEMSRG----KGVRLQSYKDGGISDVICF 703 + V++T + + +N L+ F QI M R KG+ L+ G V+ Sbjct: 649 ELISVRLTDGQKEMMIATKNGYLIRFEETQIRSMGRTAAGVKGISLR-----GDDVVVSM 703 Query: 704 KICE-GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752 +I E G + + + + ++ RGG G K ++G ++ Sbjct: 704 EIIEPGSKILHVTNKGFGKQTDESEYRRINRGGKGVFTCKLDEKTGNVVA 753 >gi|163803514|ref|ZP_02197384.1| DNA gyrase, subunit A [Vibrio sp. AND4] gi|159172690|gb|EDP57541.1| DNA gyrase, subunit A [Vibrio sp. AND4] Length = 907 Score = 424 bits (1090), Expect = e-116, Method: Compositional matrix adjust. Identities = 244/605 (40%), Positives = 361/605 (59%), Gaps = 57/605 (9%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + V++ L YL YA+S I RA+PD+RDG KPVHRR++ AM+ +G D+ +KKSA Sbjct: 8 ITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSA 67 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG+IDGDSAAA RYTE RM Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVRM 127 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 ++A +L +D++ VD+ Y+ + P V P+K PNLL NG SGIAVGMAT+IP HN+ Sbjct: 128 AKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGASGIAVGMATNIPPHNL 187 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ + LA I+N EI+I++L++YI GPDFPT +I R+ IV++Y+ GRG +R++ Sbjct: 188 VEVIDGCLAFINNEEITIDELMDYIPGPDFPTAALI-SGRKGIVDAYKTGRGKIYMRSKA 246 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFP 315 +E G I+VTEIPYQV K+RLIEKIAEL+ K++ + +RDES +D +RIV+ Sbjct: 247 DIEVEKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIEC 306 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 K ++ ++++ +++ + ++T F +NM L+ G+ PQ+ L +LK ++ HRREV+ RR Sbjct: 307 KRDAVG-EVVLNNLYAQTQLQTTFGINMVALNNGQ-PQLFNLKDMLKCFVDHRREVVTRR 364 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR------------ 420 + F ++ R IL+ L +A NIDE+I +I+N P K +VSR Sbjct: 365 TIFELRKARERAHILEALSLALANIDEVIELIKNAPTPAEAKIGLVSRGWDLGNVASMLE 424 Query: 421 ----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458 + LTE Q AIL LRL L LE +I E LL E Sbjct: 425 RAGTDAARPEWLEEQYGIRDGQYYLTETQAQAILELRLHRLTGLEHEKILDEYKTLLEEI 484 Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518 ++ +L S ++ I E+ V++++ RRT E++ A + +I +E Sbjct: 485 AELMHILASTERLMEVIREELETVRDVYGDE-----RRT---EITAASHDIDMEELIARE 536 Query: 519 PITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570 + V +S+ G+++ + + SA K+ D ++ L A+T D IL ST G Sbjct: 537 DVVVTLSHEGYVKYQILSDYEAQRRGGKGKSATKMKDEDFIERLLVANTHDNILCFSTRG 596 Query: 571 KAYTL 575 K Y L Sbjct: 597 KTYRL 601 >gi|319787325|ref|YP_004146800.1| DNA gyrase subunit alpha [Pseudoxanthomonas suwonensis 11-1] gi|317465837|gb|ADV27569.1| DNA gyrase, A subunit [Pseudoxanthomonas suwonensis 11-1] Length = 868 Score = 424 bits (1090), Expect = e-116, Method: Compositional matrix adjust. Identities = 244/606 (40%), Positives = 348/606 (57%), Gaps = 55/606 (9%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 V+L + YL YA+S I RA+PD+RDG KPVHRR++ AM+E+G + KSARIV Sbjct: 11 VNLEDEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELGAHSNKPYYKSARIV 70 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGDQSVYD+LVR+AQPF RY L+ GQGNFG++DGDSAAA RYTEARM+++ Sbjct: 71 GDVIGKYHPHGDQSVYDTLVRMAQPFSLRYLLVDGQGNFGSVDGDSAAAMRYTEARMSRL 130 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 ++ +D++ VDF+ Y+E++ EP V P++FPNLL NG++GIAVGMAT+IP HN+ E+ Sbjct: 131 THELMADIDKETVDFQPNYDEKELEPTVMPTRFPNLLVNGSAGIAVGMATNIPPHNLTEV 190 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 LALID PE+ ++ L++YI GPDFPT GII I +YR GRG R+RA+ +E Sbjct: 191 VNGLLALIDEPELDVDALMQYIPGPDFPTAGII-NGVGGIQLAYRTGRGRVRIRAKADIE 249 Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319 G I+VTEIPYQV K+RLIEKIAEL+ K+I + ++RDES +D + R Sbjct: 250 VADNGRESIIVTEIPYQVNKARLIEKIAELVKEKKIEGISELRDESDKDGMRIYIEVKRG 309 Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379 ++++ +++ + +E+ F +NM L GR PQ++ L IL+ +L HRREV+ RR+ F Sbjct: 310 ESAEVVLNNLYQQTQLESVFGINMVALVDGR-PQLVNLKQILEAFLRHRREVVTRRTIFE 368 Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK------------PVMV--------- 418 ++ R +L+GL +A NIDE+I +I+ D P+ P +V Sbjct: 369 LRKARARAHVLEGLTVALANIDEMIELIKTSDNPQVAKERMLDRTWEPGLVGALLAATGA 428 Query: 419 ----------------SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKID 462 R+ LTE Q IL +RL L LE+ ++ E LL + Sbjct: 429 EASRPDDLPAGVGLVEGRYRLTEVQAQQILEMRLHRLTGLEQEKLTEEYRQLLETIRALI 488 Query: 463 SLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITV 522 +L + I E+ E+K F G R + S D L +I E + V Sbjct: 489 EILEDPEVLLQVIRTELNELKAEF------GDDRRSEIRASEEDLDILD--LIAPEDVVV 540 Query: 523 VISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT 574 +S+ G+ R+ K SA K+ D + +T D +L ++ GK + Sbjct: 541 TLSHAGYAKRQPVSAYRAQKRGGRGRSAAATKDEDFIDRLWLVNTHDTLLTFTSSGKVFW 600 Query: 575 LPAGNL 580 LP L Sbjct: 601 LPVHQL 606 >gi|188533369|ref|YP_001907166.1| DNA gyrase subunit A [Erwinia tasmaniensis Et1/99] gi|188028411|emb|CAO96272.1| DNA gyrase subunit A [Erwinia tasmaniensis Et1/99] Length = 878 Score = 424 bits (1090), Expect = e-116, Method: Compositional matrix adjust. Identities = 254/637 (39%), Positives = 376/637 (59%), Gaps = 60/637 (9%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + V++ L+ YL YA+S I RA+PD+RDG KPVHRR+++AM+ +G D+ A+KKSA Sbjct: 8 ITPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG++DGDSAAA RYTE RM Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEVRM 127 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 +++A +L ++++ VDF Y+ + P V P++ PNLL NG+SGIAVGMAT+IP HN+ Sbjct: 128 SKIAHELLADLEKETVDFVPNYDGTEQIPEVMPTRIPNLLINGSSGIAVGMATNIPPHNI 187 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ LA ID+ I++E L+E+I GPDFPT II R I E+YR GRG +RAR Sbjct: 188 TEVINGCLAYIDDENITVEGLMEHIPGPDFPTAAII-NGRRGIEEAYRTGRGKIYIRARG 246 Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314 VE + G I+V EIPYQV K+RLIEKIAEL+ KR+ + +RDES +D +RIV+ Sbjct: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRLEGISALRDESDKDGMRIVIE 306 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K ++ ++++ +++ L+ ++T F +NM L G+ P++MPL IL+ ++ HRREV+ R Sbjct: 307 VKRDAVG-EVVLNNLYSLTQLQTSFGINMVALHQGQ-PKIMPLKDILEAFVRHRREVITR 364 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----------- 420 R+ F ++ R IL+ L +A NID II +IR P K ++SR Sbjct: 365 RTIFELRKARDRAHILEALAVALANIDPIIELIRAAPTPAEAKAGLISRPWALGNVSAML 424 Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457 + LTE Q AIL+LRL+ L LE ++ E +LLA+ Sbjct: 425 ERAGDNAARPEWLEEQYGIRDGQYHLTEQQAQAILDLRLQKLTGLEHEKLLDEYKDLLAQ 484 Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517 ++ +L S ++ I E+ +++ F G +R T + AD + +I + Sbjct: 485 IAELLRILASSERLMEVIREELELIRDQF------GDKRRTEITANSADINI--EDLINQ 536 Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569 E + V +S++G+++ + + SA KE D + L A+T D IL S+ Sbjct: 537 EDVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSR 596 Query: 570 GKAYTLPAGNLL-SGRG-HGEAIQLLIDLNHNQDIVT 604 G+ Y + L + RG G I L+ L N+ I Sbjct: 597 GRLYWMKVYQLPEASRGARGRPIVNLLPLEANERITA 633 >gi|310825641|ref|YP_003957998.1| DNA gyrase subunit A [Eubacterium limosum KIST612] gi|308737375|gb|ADO35035.1| DNA gyrase subunit A [Eubacterium limosum KIST612] Length = 834 Score = 424 bits (1089), Expect = e-116, Method: Compositional matrix adjust. Identities = 248/633 (39%), Positives = 392/633 (61%), Gaps = 41/633 (6%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 + +K V++ ++ Y+ YA+S I RA+PD+RDG KPVHRRI++AMSE+G+ +K Sbjct: 8 DRIKEVNIEEEMKSCYVDYAMSVIIGRALPDVRDGLKPVHRRILYAMSELGMTPDKPTRK 67 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 SARIVGEV+GK HPHGD +VYD++VR+AQ F RY I GQGNFG+IDGD AAA RYTEA Sbjct: 68 SARIVGEVLGKYHPHGDTAVYDAMVRMAQEFSTRYMTIYGQGNFGSIDGDGAAAMRYTEA 127 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 +M+++A +L+ +++D VDF ++E + EP V P++ P+LL NG++GIAVGMAT+IP H Sbjct: 128 KMSKIALEMLRDINKDTVDFIPNFDESEMEPEVLPARVPHLLVNGSAGIAVGMATNIPPH 187 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 N+ E+ + +A IDNP+I+I++L+ +I GPDFPT GI++ + I E+YR GRG ++R+ Sbjct: 188 NLGEVVDGTIAYIDNPDITIDELMVHIKGPDFPTAGILL-GKSGIKEAYRTGRGRIKIRS 246 Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES--AEDVRIV 312 + +E +G IVVTEIPY V KS+L+EKIAEL+ KR+ + D+RDE+ + +RIV Sbjct: 247 KVEMETTKKGRKQIVVTEIPYMVNKSKLVEKIAELVKEKRVEGIADLRDETDLKKGIRIV 306 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRV------PQVMPLDGILKEWLA 366 + K R + +++ ++ + ++ F + M L P+V+ L +L ++ Sbjct: 307 IELK-RDANETIILNQLYKHTQLQDTFGVIMLALVGNEYDKKKLEPKVLNLKQVLHYYVE 365 Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSL 423 H++E++ RR+ F ++ + R IL+GL IA NIDE+IA+IR + + K ++ RF+L Sbjct: 366 HQKEIITRRTIFDLKKAEARAHILEGLRIALDNIDEVIALIRAAKDGKEAKVQLMERFAL 425 Query: 424 TENQVDAILNLRLRSLRKLEEYQIK---SELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480 TE Q AIL++RL+ L LE +I+ +EL ++AE + ++L + N I E+ Sbjct: 426 TEIQAQAILDMRLQRLTGLEREKIEEEYAELQKMIAEYK---AILADEQLVLNIIKDELT 482 Query: 481 EVKEIFSKSTDLGRRRTTF-CEVSRADKATLQQAMIEKEPITVVISNRGWI--------R 531 E+KE + RRT+F +V D + +IE+E + + +++ G++ R Sbjct: 483 EIKEKYGDE-----RRTSFDIDVEDFD----VEDLIEEEEVVITMTHIGYVKRISADTYR 533 Query: 532 SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEA 589 S K ++AL +E D ++ T +L S GK Y L A + G G A Sbjct: 534 SQKRGGKGITALSTRENDFVEHLFTTTTHHFLLFFSNKGKVYRLKAFEVPEGGRTARGTA 593 Query: 590 IQLLIDLNHNQDIVTAF-VYDSTC-KLLVVSSK 620 I ++ L+ ++ I T V + T K L++++K Sbjct: 594 IVNILQLDPDEKITTMIPVKEFTADKCLIMATK 626 >gi|240850765|ref|YP_002972165.1| DNA gyrase subunit A [Bartonella grahamii as4aup] gi|240267888|gb|ACS51476.1| DNA gyrase subunit A [Bartonella grahamii as4aup] Length = 927 Score = 424 bits (1089), Expect = e-116, Method: Compositional matrix adjust. Identities = 255/696 (36%), Positives = 394/696 (56%), Gaps = 62/696 (8%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 ++ +S+ ++ YL YA+S I RA+PD+RDG KPVHRRI+HAM+EMGL F +++KSA Sbjct: 16 IEPISIIDEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAMNEMGLSFNKSYRKSA 75 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 +VGEV+GK HPHGD S+YD+LVR+AQ F R PLI GQGNFG++DGD AA RYTE R+ Sbjct: 76 GVVGEVMGKFHPHGDASIYDALVRMAQDFSLRNPLIDGQGNFGSVDGDPPAAMRYTECRL 135 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 +V+E +L +D+D VDF+D Y+ + EPVV P++FPNLL NG+ GIAVGMAT+IP HN+ Sbjct: 136 EKVSEELLADIDKDTVDFQDNYDGREREPVVLPARFPNLLVNGSGGIAVGMATNIPPHNL 195 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ + +ALIDNP+I+++K++E I GPDFPTGGII+ + +Y GRG +RA+ Sbjct: 196 GEVVDGCIALIDNPDITLDKIIEIIPGPDFPTGGIIL-GLSGVRAAYETGRGSIIMRAKV 254 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316 +EE+ G I+V+EIPYQV K+ +IEK+AEL+ KRI + D+RDES D V+ Sbjct: 255 EIEEIRSGRQAIIVSEIPYQVNKATMIEKMAELVRDKRIEGISDLRDESDRDGYRVVIEL 314 Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376 + + ++++ ++ + ++T F NM L+ G+ P+ M L +L+ +++ R EV+ RR+ Sbjct: 315 KKDVVAEVVLNQLYRYTPLQTSFGCNMVALNGGK-PEQMTLLDMLRAFVSFREEVVSRRT 373 Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK-----------PVM-------- 417 + ++ R +L GL +A NIDEIIA+IR P+ P M Sbjct: 374 KYLLRKARERAHVLVGLALAVANIDEIIALIRKAPDPQTARAQLMERRWPAMDVAPLIKL 433 Query: 418 ----------VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467 ++L+E Q AIL LRL+ L L +I EL+ + + +L S Sbjct: 434 IDDPRHIIHEDGTYNLSEEQARAILELRLQRLTALGRDEIADELNKIGVDIADYLDILAS 493 Query: 468 GKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNR 527 + + E+ ++E F+ RRT F S ++ + +I E + V +S+ Sbjct: 494 RVRIMCIVKDELSALREEFATP-----RRTVFGFGSAEMES---EDLIAPEDMVVTVSHS 545 Query: 528 GWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYT 574 G+I R+ + S + K+ D + A+T +L S+ G K + Sbjct: 546 GYIKRVPLNTYRAQRRGGKGRSGMSTKDEDFVTRLFVANTHTPVLFFSSRGIVYKEKVWR 605 Query: 575 LPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD------STCKLLVVSSKGNAFIVEE 628 LP G S G A+ ++ L + I T S ++ +++G + Sbjct: 606 LPLGTPQS---RGRALINMLPLQQGERITTIMPLPEDEASWSALDVMFATTRGTVRRNKL 662 Query: 629 SEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVV 664 S+ + R GK +K+ E+++ L V+ +H VV Sbjct: 663 SDFVQVNRNGKIAMKLDEEDEI-LSVETCTEHDDVV 697 >gi|224437379|ref|ZP_03658351.1| DNA gyrase subunit A [Helicobacter cinaedi CCUG 18818] gi|313143843|ref|ZP_07806036.1| DNA gyrase [Helicobacter cinaedi CCUG 18818] gi|313128874|gb|EFR46491.1| DNA gyrase [Helicobacter cinaedi CCUG 18818] Length = 824 Score = 424 bits (1089), Expect = e-116, Method: Compositional matrix adjust. Identities = 281/773 (36%), Positives = 453/773 (58%), Gaps = 51/773 (6%) Query: 10 NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69 ++L+E+ V + +++E YL Y++S I RA+PD +DG KPVHRRI++AM+E+ L Sbjct: 2 DSLLEDKSVEVKIDDSIKESYLDYSMSVIVGRALPDAKDGLKPVHRRILYAMNELSLSPR 61 Query: 70 AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129 +KKSARIVG+VIGK HPHGD +VYD+LVR+AQ F R L+ GQGNFG+IDGD AAA Sbjct: 62 RPYKKSARIVGDVIGKYHPHGDTAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDGAAAM 121 Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189 RYTEARMT +E +L+ +D+D V+F Y+ SEP V PS+ PNLL NG+SGIAVGMAT Sbjct: 122 RYTEARMTSASEEMLRDIDKDTVEFVPNYDNTLSEPDVLPSRIPNLLVNGSSGIAVGMAT 181 Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249 SIP H + EI +A + +IDN +++ +LE + GPDFPTGGII + I+E+YR GRG Sbjct: 182 SIPPHRIDEIIDALIFVIDNNTQNVDDVLELVQGPDFPTGGIIY-GKMGILEAYRTGRGR 240 Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AED 308 RVRA+ +E+ + IV+ E+PYQV K++L+E+I+EL K I + ++RDES E Sbjct: 241 IRVRAKVHIEKT-KTKDVIVIDEVPYQVNKAKLVEQISELAKEKIIEGIAEVRDESDREG 299 Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368 +R+V+ K ++ ++++ +F + ME+ F + + ++ + P++ L +L+ ++AHR Sbjct: 300 IRVVIELKRDAM-SEIVLNHLFKSTTMESTFGIILLAIN-NKEPKIFNLLELLQIFIAHR 357 Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTE 425 + ++ RRS F ++ R IL+GL+IA NIDEII IIR + ++ K +V +FSL+E Sbjct: 358 KTIIIRRSIFELEKAKARAHILEGLIIALDNIDEIIRIIRASKDTEEAKNALVEKFSLSE 417 Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485 Q AIL +RL+ L LE +I +E L + ++S+L S ++ + + E+ E+KE Sbjct: 418 LQAKAILEMRLQRLTGLERDKINAEYAELQEQIAYLESILKSEEKLKSIVKDELLEIKEK 477 Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRS--LKSHSVDLSA 542 FS +R+T E D ++ + +I E + V +S+RG+++ LK++ Sbjct: 478 FS-----SKRKTQIEE----DYDSIDIEDLIPNEKVVVTMSHRGYVKRVLLKTYEKQNRG 528 Query: 543 LHFK------EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL-LSGRGH-GEAIQLLI 594 K E D ++ A+T D I+ ++ G+ Y L + +GR G+A+ LI Sbjct: 529 GKGKVSGNTHEDDFIESFFVANTHDTIMFVTNKGQLYWLKVYKIPEAGRTAIGKAVVNLI 588 Query: 595 DLNHNQDI---VTAFVYDSTCKLLVVSSKGNAFIVEESEI--IANTRK-GKTFLKVSSEE 648 +L+ ++ I +T ++ L+ + G IV+ + + +N R G + + + Sbjct: 589 NLSPDEKIMATITTTDFNDDKSLVFFTKNG---IVKRTNLKEYSNIRSVGVRAINLDEND 645 Query: 649 KMKLVVKVTGDHVA---VVGENRKLLIFSIDQIPEMSR-GKGV---RLQSYKDGGISDVI 701 ++ + + G V + + + F ID++ E+ R G+GV + ++ +D I+ Sbjct: 646 EL-VTAHIVGSSVKELFIATQQGMCIRFGIDELREIGRVGRGVTGIKFKASEDCVIAATT 704 Query: 702 CFKICEGLTWIDSAGRSYNRSENDLLG--WLGKRGGVGSLVPKGFPRSGKFLS 752 + L + G + L G L R G G +V K P++GK +S Sbjct: 705 ITSDTDKLLTVSEQG----IGKQTLAGEYRLQSRAGKGVIVMKLTPKTGKLVS 753 >gi|308063512|gb|ADO05399.1| DNA gyrase subunit A [Helicobacter pylori Sat464] Length = 826 Score = 424 bits (1089), Expect = e-116, Method: Compositional matrix adjust. Identities = 249/625 (39%), Positives = 380/625 (60%), Gaps = 46/625 (7%) Query: 4 DNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63 DN+ N +N+ V + ++EE YLAY++S I RA+PD RDG KPVHRRI++AM E Sbjct: 3 DNLINET----KNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHE 58 Query: 64 MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123 +GL A+KKSARIVG+VIGK HPHGD +VYD+LVR+AQ F R L+ GQGNFG+IDG Sbjct: 59 LGLTSKVAYKKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSIDG 118 Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183 D+AAA RYTEARMT+ +E IL+ +D+D +DF Y++ EP + PS+ PNLL NG +GI Sbjct: 119 DNAAAMRYTEARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGI 178 Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243 AVGMATSIP H + EI +A + +++NP ++++LE++ GPDFPTGGII + I+E+Y Sbjct: 179 AVGMATSIPPHRIDEIIDALVHVLENPNAGLDEILEFVKGPDFPTGGIIY-GKAGIIEAY 237 Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303 + GRG +VRA+ VE+ + IV+ E+P+Q K++L+E+I++L K+I + ++RD Sbjct: 238 KTGRGRVKVRAKVHVEKT-KNKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRD 296 Query: 304 ES-AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362 ES E +R+V+ K ++ ++++ ++ L+ MET F + + + + P++ L +L+ Sbjct: 297 ESDREGIRVVIELKRDAM-SEIVLNHLYKLTTMETTFSIILLAI-YNKEPKIFTLLELLR 354 Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVS 419 +L HR+ ++ RR+ F ++ R IL+G LIA NIDEI+ +I+ P K ++ Sbjct: 355 LFLNHRKTIIIRRTIFELEKAKARAHILEGYLIALDNIDEIVRLIKTSQSPEAAKNALME 414 Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479 RF+L+E Q AIL +RL+ L LE +IK E NLL ++ +L S + + E+ Sbjct: 415 RFTLSEIQSKAILEMRLQRLTGLERDKIKEEYQNLLELIGDLNGILKSEDRLNEVVKTEL 474 Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539 EVKE FS RRT EV + +I EP+ V +S +G+++ VD Sbjct: 475 LEVKEQFSSP-----RRTEIQEVYENIDI---EDLIANEPMVVSMSYKGYVK-----RVD 521 Query: 540 LSALHFK-------------EGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLL 581 L A + E D ++ A+T D +L ++ G K Y +P + + Sbjct: 522 LKAYERQNRGGKGKLSGNTYEDDFIENFFVANTHDILLFITNKGQLYRLKVYKIPEASRI 581 Query: 582 SGRGHGEAIQLLIDLNHNQDIVTAF 606 + G+AI LI L ++ I+ Sbjct: 582 A---MGKAIVNLISLAPDEKIMATL 603 >gi|172056051|ref|YP_001812511.1| DNA gyrase, A subunit [Exiguobacterium sibiricum 255-15] gi|171988572|gb|ACB59494.1| DNA gyrase, A subunit [Exiguobacterium sibiricum 255-15] Length = 886 Score = 424 bits (1089), Expect = e-116, Method: Compositional matrix adjust. Identities = 227/571 (39%), Positives = 354/571 (61%), Gaps = 23/571 (4%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 +K +++ + ++ YA+S I RA+PD+RDG KP HRRI++AM+++G+ KKSA Sbjct: 8 IKDINISQEMRTSFMDYAMSVIVARALPDVRDGLKPGHRRILYAMNDLGIRADKPHKKSA 67 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 RIVGEVIGK HPHGD +VYD++VR+AQ F RY L+ G GNFG++DGDSAAA RYTEARM Sbjct: 68 RIVGEVIGKYHPHGDSAVYDTMVRMAQDFSYRYELVDGHGNFGSVDGDSAAAMRYTEARM 127 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 +++A I++ ++++ V+F+D Y+ + EP V PS+FPNLL NG+SGIAVGMAT+IP H + Sbjct: 128 SKIAMEIVRDINKNTVNFKDNYDGSEREPEVLPSRFPNLLVNGSSGIAVGMATNIPPHQL 187 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ + LAL NP+I+I +L+++I GPDFPT G I+ R I +Y GRG VRA+ Sbjct: 188 GEVIDGVLALSHNPDITISELMQHIPGPDFPTAGEIL-GRSGIRRAYETGRGSLIVRAKA 246 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316 +E+ + I+VTE+PYQV K+RL+EKIA+L+ K+I + D+RDES V+ Sbjct: 247 EIEQTKKDRERIIVTELPYQVNKARLVEKIADLVREKKIEGITDLRDESDRRGMRVVMEI 306 Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376 R + +++ +++ + M+T F +NM + GR P+ + L +L +L H++E++ RR+ Sbjct: 307 RRDANASVILNNLYKQTSMQTTFGVNMLAIVSGR-PRTLTLKEMLYHYLEHQKEIVRRRT 365 Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAII---RNEDKPKPVMVSRFSLTENQVDAILN 433 F ++ + R +L GL IA ++DE+I II R D + ++ RF L+E Q AIL+ Sbjct: 366 QFDLEKAEAREHLLAGLRIALDHLDEVIKIIRANRTADAAREQLMERFELSEKQSQAILD 425 Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493 +RL+ L LE +I +E D ++A ++ +L S + I E+ EVKE F+ Sbjct: 426 MRLQRLTGLEREKIDAEYDEIMALITELKRILESDEVLLELIRTELEEVKERFND----- 480 Query: 494 RRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSLKSHSV--------DLSALH 544 +RRT R D + + +I ++ I + +++ G+I+ L + S + + Sbjct: 481 QRRTEI----RMDHIEFEDEDLIPEKDIIITLTSSGYIKRLTTDSYRAQRRGGRGVQGIG 536 Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575 + D + L T D IL + GK Y + Sbjct: 537 TNDADYVTRLLSCSTHDTILFFTNRGKVYRI 567 >gi|315640351|ref|ZP_07895467.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Enterococcus italicus DSM 15952] gi|315483887|gb|EFU74367.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Enterococcus italicus DSM 15952] Length = 823 Score = 424 bits (1089), Expect = e-116, Method: Compositional matrix adjust. Identities = 267/773 (34%), Positives = 437/773 (56%), Gaps = 63/773 (8%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 ++N+ +V+L ++E ++ YA+S I RA+PD+RDG KPVHRRI++ M+E+G+ K Sbjct: 6 KQNIHSVNLTSEMKESFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHK 65 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSARIVG+V+GK HPHGD ++Y+S+VR+AQPF RY L+ G GNFG++DGD AAA RYTE Sbjct: 66 KSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRYMLVDGHGNFGSVDGDGAAAMRYTE 125 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 ARM+++A +L+ +++D VDF+ Y++ + EP V P++FPNLL NGT+GIAVGMAT+IP Sbjct: 126 ARMSKLAVEMLRDINKDTVDFQSNYDDTEREPAVLPARFPNLLVNGTTGIAVGMATNIPP 185 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E+ A L+DNP+++ +L+E + GPDFPTGGI++ + I +Y G+G VR Sbjct: 186 HNLNEVIAAIDLLMDNPDVTTSELMEVLPGPDFPTGGIVM-GKSGIRRAYETGKGSIIVR 244 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313 R ++E+ G I++TE+PY V K++LIE+I+EL KRI + +RDES+ ++ Sbjct: 245 GRVEIDEMSNGKERILITELPYMVNKAKLIERISELHRDKRIEGITALRDESSRKGMRIV 304 Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373 R + +++ +I+ ++ +++ F NM + G VP+++ L IL+ ++ H++EV+ Sbjct: 305 IEVRRDVSASVILNNIYKMTALQSSFGFNMLAIEKG-VPKILSLKRILENYIEHQKEVIT 363 Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDA 430 RR+ F + + R IL+GL IA +IDEIIAIIR ++D K ++ RF ++ Q A Sbjct: 364 RRTIFDKKKAEARAHILEGLRIALDHIDEIIAIIRGSKSDDLAKATLIERFDFSDRQAQA 423 Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490 IL++RLR L LE +I++E LLA + +L A R V+ I + Sbjct: 424 ILDMRLRRLTGLEREKIENEYQELLAFIADLTDIL----------ARPERVVQIIKEELL 473 Query: 491 DLGRRRTTFCEVSRAD------KATLQQAMIEKEPITVVISNRGWI--------RSLKSH 536 DLG+R F + R + + + +IE+E I + ++N G+I R+ + Sbjct: 474 DLGKR---FGDARRTELLVGEVLSLEDEDLIEEEEIVITLTNNGYIKRVANTEFRAQRRG 530 Query: 537 SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLL 581 + + + D +K + T D +L + GK Y +P NLL Sbjct: 531 GRGVQGMGVHDEDFVKTLVSCSTHDTLLFFTNAGKVYKAKGYEIPEYGRTAKGIPVINLL 590 Query: 582 SGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF 641 G E IQ +I + N + +++ +T +V + AF S I +N G Sbjct: 591 -GIDSSERIQAIIAVK-NHEAAEQYLFFTTKLGVVKRTDVQAF----SNIRSN---GLIA 641 Query: 642 LKVSSEEKMKLVVKVTGDHVAVVGENRKL-LIFSIDQIPEMSRG----KGVRLQSYKDGG 696 + + ++++ V++ G ++G + + F+ + +M R +G+RL+ D Sbjct: 642 IGLKEQDELVNVLQTKGSDTIIIGTHGGYSVTFAESVVRDMGRAAAGVRGIRLRE-GDYV 700 Query: 697 ISDVICFKICEGLTWIDSA-GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG 748 + I E L ++ G+ SE + G GK ++ PK P +G Sbjct: 701 VGTAILTPESEVLVITENGYGKRTASSEYPVKGRGGKGIKTANITPKNGPLAG 753 >gi|59711811|ref|YP_204587.1| DNA gyrase (type II topoisomerase), subunit A [Vibrio fischeri ES114] gi|59479912|gb|AAW85699.1| DNA gyrase (type II topoisomerase), subunit A [Vibrio fischeri ES114] Length = 878 Score = 424 bits (1089), Expect = e-116, Method: Compositional matrix adjust. Identities = 247/605 (40%), Positives = 359/605 (59%), Gaps = 57/605 (9%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + V++ L YL YA+S I RA+PD+RDG KPVHRR++ AM +G D+ +KKSA Sbjct: 8 ITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMDVLGNDWNKPYKKSA 67 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG+IDGDSAAA RYTE RM Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVRM 127 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 ++A +L +D++ VD+ Y+ + P V P+K PNLL NG+SGIAVGMAT+IP HN+ Sbjct: 128 AKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ LA I+N EI+I++L+ YI GPDFPT +I R+ IV++Y+ GRG +R++ Sbjct: 188 TEVVNGCLAFIENEEITIDELMNYIPGPDFPTAALI-SGRKGIVDAYKTGRGKVYMRSKA 246 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFP 315 +E G I+VTEIPYQV K+RLIEKIAEL+ K++ + +RDES +D +RIV+ Sbjct: 247 NIEADKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIEC 306 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 K R ++++ +++ L+ ++T F +NM L G+ P++ L +LK ++ HRREV+ RR Sbjct: 307 K-RDAVGEVVLNNLYSLTQLQTTFGINMVALDNGQ-PKLFNLKEMLKCFVDHRREVVTRR 364 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR------------ 420 + F ++ R IL+GL +A NIDEII +I+N P K ++SR Sbjct: 365 TIFELRKARDRAHILEGLALALANIDEIIELIKNAPTPAEAKEGLISRGWDLGNVASMLE 424 Query: 421 ----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458 + LTE Q AIL LRL L LE +I E LL E Sbjct: 425 RAGTDAARPDWLEPEFGIREGKYFLTEQQAQAILELRLHRLTGLEHEKILDEYKALLDEI 484 Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518 ++ +L S ++ I E+ V++++ RRT E+ A + +I +E Sbjct: 485 AELMHILASTERLMEVIRDELVMVRDMYGDE-----RRT---EIGAAIHDIDMEDLITQE 536 Query: 519 PITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570 + V +S G+++ + + SA K+ D ++ L A+T D IL ST G Sbjct: 537 DVVVTLSREGYVKYQILSDYEAQRRGGKGKSATKMKDEDFIERLLVANTHDNILCFSTRG 596 Query: 571 KAYTL 575 KAY+L Sbjct: 597 KAYSL 601 >gi|147676343|ref|YP_001210558.1| type IIA topoisomerase, A subunit [Pelotomaculum thermopropionicum SI] gi|146272440|dbj|BAF58189.1| type IIA topoisomerase, A subunit [Pelotomaculum thermopropionicum SI] Length = 808 Score = 424 bits (1089), Expect = e-116, Method: Compositional matrix adjust. Identities = 250/650 (38%), Positives = 382/650 (58%), Gaps = 29/650 (4%) Query: 26 LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85 ++ YL YA+S I RA+PD+RDG KPVHRRI++AM +GL +KSA IVGEV+ K Sbjct: 17 MKHSYLDYAMSVIVGRALPDVRDGLKPVHRRILYAMHSLGLTPDRPHRKSAYIVGEVLAK 76 Query: 86 LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145 HPHGD +VYD+LVRLAQ F RYPL+ G GNFG++DGDSAAA RYTEARM ++ +L Sbjct: 77 YHPHGDVAVYDALVRLAQDFACRYPLVDGHGNFGSVDGDSAAAMRYTEARMARITLEMLA 136 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 ++++ V+F Y+ + EP V P++ PNLL NG+SGIAVGMAT+IP HN+ E+ + + Sbjct: 137 DIEKETVNFIPNYDGKTVEPTVLPARIPNLLINGSSGIAVGMATNIPPHNLGEVIDGVIM 196 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265 LIDNP+ +I L+ I GPDFPTGG I+ RE I ++YR GRG +VRA+ +E++G G Sbjct: 197 LIDNPDANIRDLMSVIKGPDFPTGGKIM-GREGIWDAYRTGRGSIKVRAQASIEKIGGGR 255 Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325 IVV+EIPYQV K+RLIEKIAEL+ K+I + D+RDES ++ R +P ++ Sbjct: 256 HSIVVSEIPYQVNKARLIEKIAELVKDKKIDGISDLRDESDRRGMRIVIELRRDANPQVV 315 Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385 + ++ + M+ F + M L G P+V+ L +L +L H+++V+ RR+ F + + Sbjct: 316 LNQLYKHTQMQDSFGVIMLALVEGE-PRVLNLKEVLFYYLQHQKDVVVRRTRFELNRAEA 374 Query: 386 RVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVDAILNLRLRSLRKL 442 R I++GL IA ++DE+I IR+ P + ++ +F LTE Q +AI+ +RLR L L Sbjct: 375 RAHIVEGLRIAIAHLDEVIKTIRSSRTPEVARKALMEKFGLTEKQAEAIVEMRLRQLTGL 434 Query: 443 EEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEV 502 E +++ E L+ + + S+L+ ++ I E+ VK+ F+ RRT + Sbjct: 435 EREKLEQEYRELVEKIAYLRSVLDDERKVLGIIKDELLAVKKKFADP-----RRTA---I 486 Query: 503 SRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIA 554 + + A ++ +I +E + + I+++G+I RS + ++A+ KE D ++ Sbjct: 487 TSEEAAFEEEDLIPEEDVVITITSQGYIKRIPLDTYRSQRRGGRGVTAMGTKEEDFVRHL 546 Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEAIQLLIDLNHNQDIVTAFV---YD 609 T L + GK Y L + +GR G AI L+ + + I T +D Sbjct: 547 FITTTHHFFLFFTNQGKVYRLKVHEIPEAGRQAKGTAIVNLLYIGSEEKITTVIPVREFD 606 Query: 610 STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV-VKVTG 658 L + + +G +E + R G + +S E LV VK+TG Sbjct: 607 PAQYLFMATKRGIVKKTPLNEYDTSRRDG--IIAISLNEGDHLVDVKLTG 654 >gi|260772916|ref|ZP_05881832.1| DNA gyrase subunit A [Vibrio metschnikovii CIP 69.14] gi|260612055|gb|EEX37258.1| DNA gyrase subunit A [Vibrio metschnikovii CIP 69.14] Length = 893 Score = 424 bits (1089), Expect = e-116, Method: Compositional matrix adjust. Identities = 254/645 (39%), Positives = 373/645 (57%), Gaps = 62/645 (9%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + V++ L YL YA+S I RA+PD+RDG KPVHRR++ AMS +G D+ +KKSA Sbjct: 8 ITPVNIEDELRSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSVLGNDWNKPYKKSA 67 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG+IDGDSAAA RYTE RM Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVRM 127 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 +++A +L +D++ VDF Y+ + P V P+K PNLL NG+SGIAVGMAT+IP HN+ Sbjct: 128 SKIAHELLADLDKETVDFVPNYDGTEQIPAVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ LA I N +I+I++L+EYI GPDFPT +I R+ IV++Y+ GRG +R++ Sbjct: 188 TEVINGCLAYISNEDITIDELMEYIPGPDFPTAALI-SGRKGIVDAYKTGRGKVYMRSKA 246 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316 +E G I+V+EIPYQV K+RLIEKIA+L+ K++ + +RDES +D ++ Sbjct: 247 EIETEKNGKETIIVSEIPYQVNKARLIEKIADLVKEKKVEGISALRDESDKDGMRIVIEC 306 Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376 R ++++ +++ + ++T F +NM L G+ P++ L +LK ++ HRREV+ RR+ Sbjct: 307 RRDAVAEVVLNNLYANTQLQTTFGINMVALDNGQ-PKLFNLKEMLKCFVNHRREVVTRRT 365 Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR------------- 420 F ++ R IL+GL +A NIDEII +IR P K +VSR Sbjct: 366 IFELRKARERAHILEGLSLALANIDEIIDLIRKAPTPAEAKMGLVSRGWDLGHVAAMLER 425 Query: 421 ---------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKE 459 + LTE Q AIL+LRL L LE +I E LL E Sbjct: 426 AGTDAARPEWLEPQYGIRDGQYFLTEQQAQAILDLRLHRLTGLEHGKILDEYKALLDEIA 485 Query: 460 KIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEP 519 ++ +L++ ++ I E+ ++ F + RRT E++ A + +I +E Sbjct: 486 ELIHILSNTERLMEVIREELEMARDNFGDA-----RRT---EITAASHDIDMEELIARED 537 Query: 520 ITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGK 571 + V +S+ G+++ + + SA K+ D ++ L A+T D IL ST GK Sbjct: 538 VVVTLSHEGYVKYQVLTDYEAQRRGGKGKSATRMKDEDYIERLLVANTHDNILCFSTRGK 597 Query: 572 AYTLPAGNL-LSGR-GHGEAIQLLIDLNHNQDI-----VTAFVYD 609 Y L L L+ R G+ I L+ L N+ I VT F D Sbjct: 598 TYRLKVYQLPLASRTARGKPIVNLLPLEENERITAILPVTEFSED 642 >gi|256545955|ref|ZP_05473310.1| DNA gyrase, A subunit [Anaerococcus vaginalis ATCC 51170] gi|256398377|gb|EEU11999.1| DNA gyrase, A subunit [Anaerococcus vaginalis ATCC 51170] Length = 813 Score = 424 bits (1089), Expect = e-116, Method: Compositional matrix adjust. Identities = 281/766 (36%), Positives = 447/766 (58%), Gaps = 47/766 (6%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 +N+ V L + YL Y++S I RA+PD+RDG KPVHRRI++ M +GLD +K Sbjct: 7 KNIIEVDLEKQMRSAYLEYSMSVIVSRALPDVRDGLKPVHRRILYGMEGLGLDPNKPTRK 66 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 SAR+VGEV+GK HPHGD ++YD+LVRLAQ F RYPL SGQGNFG+IDGD AAA RYTE Sbjct: 67 SARVVGEVMGKFHPHGDSAIYDALVRLAQDFSTRYPLASGQGNFGSIDGDDAAAMRYTEV 126 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 +M+++A+ +L+ +++D VDF ++EE+ EP V PS+FPNLL NG++GIAVGMAT++ H Sbjct: 127 KMSKIAKEMLRDINKDTVDFMPNFDEEEKEPTVLPSRFPNLLVNGSNGIAVGMATNMAPH 186 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 N+ + +A +A + NPEISI++L E I GPDFPTG I+ + I ++Y+ GRG ++RA Sbjct: 187 NLGDSIDACIAYMKNPEISIKELAEIIKGPDFPTGAQIL-GKSGIKKAYKTGRGKLKLRA 245 Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVL 313 +E + I+VTEIPYQV K+ LI+KIAE + K++ + DIRDES + +RIV+ Sbjct: 246 VAKIEPFKKNRERIIVTEIPYQVNKANLIKKIAEYVKDKKLEGISDIRDESDRKGMRIVI 305 Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373 K R + ++++ +++ + +ET F + +N+ + VP+++ L ++K ++ H++ V+ Sbjct: 306 EVK-RDANANIVLNNLYKQTQLETTFGI-INLALVDGVPKILDLKELIKYYIEHQKNVVR 363 Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDA 430 RR+ F + +R I++GL+IA NIDEII IIR + D+ K + RF LT+ Q A Sbjct: 364 RRTRFDLDKAQKRKHIVEGLIIAIDNIDEIIKIIRSSYDNDQIKKIFNERFGLTDLQSQA 423 Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEK-EKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489 IL+++L+ L LE ++++E D LAEK E S+LN ++ I EI E+KE F+ Sbjct: 424 ILDMQLKRLSGLEIEKLQAE-DKELAEKIEYFTSILNDEEKLIGVIEEEILEIKEKFADD 482 Query: 490 TDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSLKSHSVD--------L 540 RRT D+ + +IEKE + + +++ G+I+ L ++ + Sbjct: 483 -----RRTKIV----PDEGEFDIEELIEKEDVLISLTHDGYIKRLPINTYKVQNRGGKGI 533 Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNH 598 SA + KE D ++ L +T + +L + G+ Y+L + S + G+AI +I L Sbjct: 534 SAGNTKENDFIQKILTTNTHESLLCFTNLGRVYSLNCYEIPEASRQSRGQAIINIISLAT 593 Query: 599 NQ---DIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655 N+ DI+ +L+ + KG ++++ N ++ + +S E+ +LV Sbjct: 594 NEKITDIMELSELSDNSQLVFQTEKG-KIKKTDAQLFTNIQRN-GIIAISLEDDDRLVSI 651 Query: 656 VTGDH---VAVVGENRKLLIFSIDQIPEMSR-GKGVR-LQSYKDGGISDVICFKICEG-- 708 DH + V + + F+ I M R +GVR ++ KD +V+ I E Sbjct: 652 RQIDHPCDIIVTTQKGMAIKFASSDIRSMGRNARGVRAIRLSKD---DNVVSMNIVEDEV 708 Query: 709 -LTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753 L + + G S N+ RGG G K ++G +++ Sbjct: 709 YLLVVTANGFGKKTSFNNFNNQ--NRGGKGVRCHKITEKTGNVVAT 752 >gi|85711597|ref|ZP_01042654.1| DNA gyrase subunit A [Idiomarina baltica OS145] gi|85694457|gb|EAQ32398.1| DNA gyrase subunit A [Idiomarina baltica OS145] Length = 879 Score = 424 bits (1089), Expect = e-116, Method: Compositional matrix adjust. Identities = 254/638 (39%), Positives = 369/638 (57%), Gaps = 64/638 (10%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 V +++ L+ YL YA+S I RA+PD+RDG KPVHRR++ AM+E+ DF +KKSA Sbjct: 8 VSPINIEDELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELRNDFNKPYKKSA 67 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG++DGDSAAA RYTE RM Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYTLVDGQGNFGSVDGDSAAAMRYTEIRM 127 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 ++A +L +D++ VDF D Y+ + P V P+K PNL+ NG+SGIAVGMAT+IP HN+ Sbjct: 128 EKIAHQLLADLDKETVDFVDNYDGTERIPDVLPTKVPNLMVNGSSGIAVGMATNIPPHNL 187 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ LALIDNPEISIE+L+E+I GPDFPT I R IVE+Y+ GRG +RA+ Sbjct: 188 TEVINGTLALIDNPEISIEELMEFIPGPDFPTAASI-SGRSGIVEAYKTGRGRIHLRAKA 246 Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315 VE + G I+V+EIPYQV K+RLIEKIAEL+ KR+ + +RDES +D ++ Sbjct: 247 EVEVDEKSGRESIIVSEIPYQVNKARLIEKIAELVKEKRLEGISGLRDESDKDGMRIVIE 306 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 R ++++ ++ + M+ F +NM L G+ P++ L +L ++ HRREV+ RR Sbjct: 307 IRRGDVGEVVLNHLYANTQMQVVFGINMVALDKGQ-PKLFNLYQVLDAFVRHRREVVTRR 365 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR------------ 420 S + ++ R IL+GL I+ NIDE+I +IR P K +V+R Sbjct: 366 SVYELRKARERAHILEGLAISLANIDEVIELIRRSPTPAEAKQGLVARGWQLGNVAAMLE 425 Query: 421 ----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458 + LTE Q AIL+LRL L LE +I E LL + Sbjct: 426 SAGVDAARPEHLPEEYGIRDGSYYLTEEQAQAILDLRLHKLTGLEHEKILDEYKGLLKQI 485 Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518 E++ +L S ++ I E+ E+++ F + R+T E++ A + +I +E Sbjct: 486 EELLHILRSTERLMEVIREELVEIRDNFGDA-----RKT---EITAAAHDISMEDLINEE 537 Query: 519 PITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570 + V +S+ G+++ + + +A K+ D ++ A+T D IL ST G Sbjct: 538 DVVVTLSHEGYVKYQPLTEYEAQRRGGKGKAATKMKDDDFVERLWVANTHDTILCFSTRG 597 Query: 571 -----KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIV 603 K Y LP L S G+ I L+ L ++ I Sbjct: 598 RIYWMKVYQLP---LASRASRGKPIVNLLPLESDERIT 632 >gi|258423232|ref|ZP_05686124.1| DNA gyrase subunit A [Staphylococcus aureus A9635] gi|257846561|gb|EEV70583.1| DNA gyrase subunit A [Staphylococcus aureus A9635] Length = 887 Score = 424 bits (1089), Expect = e-116, Method: Compositional matrix adjust. Identities = 242/614 (39%), Positives = 376/614 (61%), Gaps = 30/614 (4%) Query: 26 LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85 + E +L YA+S I RA+PD+RDG KPVHRRI++ ++E G+ ++KKSARIVG+V+GK Sbjct: 18 MRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDKSYKKSARIVGDVMGK 77 Query: 86 LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145 HPHGD S+Y+++VR+AQ F RYPL+ GQGNFG++DGD AAA RYTEARMT++ +L+ Sbjct: 78 YHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEARMTKITLELLR 137 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 +++D +DF D Y+ + EP V P++FPNLLANG SGIAVGMAT+IP HN+ E+ L+ Sbjct: 138 DINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATNIPPHNLTELINGVLS 197 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265 L NP+ISI +L+E I GPDFPT G+I+ + I +Y GRG ++R+R +EE G G Sbjct: 198 LSKNPDISIAELMEDIEGPDFPTAGLIL-GKSGIRRAYETGRGSIQMRSRAEIEERGGGR 256 Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA--EDVRIVLFPKNRSLDPD 323 IVVTEIP+QV K+R+IEKIAEL+ K+I + D+RDE++ VR+V+ + + + Sbjct: 257 QRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRVVIDVR-KDANAS 315 Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383 +++ +++ + ++T F +NM L GR P+++ L L +L H++ V+ RR+ + ++ Sbjct: 316 VILNNLYKQTPLQTSFGVNMIALVNGR-PKLINLKEALVHYLEHQKTVVRRRTQYNLRKA 374 Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVDAILNLRLRSLR 440 R IL+GL IA +IDEII+ IR D K M S RF L+E Q AIL++RLR L Sbjct: 375 KDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQRFKLSEKQAQAILDMRLRRLT 434 Query: 441 KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500 LE +I++E + LL +++++L + + E+ E+++ F RRT Sbjct: 435 GLERDKIEAEYNELLNYISELEAILADEEVLLQLVRDELTEIRDRFGDD-----RRT--- 486 Query: 501 EVSRADKATLQ-QAMIEKEPITVVISNRGWIRSLKSHSV--------DLSALHFKEGDSL 551 E+ L+ + +I +E I + +S+ +I+ L + + ++ E D + Sbjct: 487 EIQLGGFEDLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRAQNRGGRGVQGMNTLEEDFV 546 Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAFV-- 607 + T D +L + G+ Y L + LS + G + I+L +++ I T Sbjct: 547 SQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIELENDEIISTMIAVK 606 Query: 608 -YDSTCKLLVVSSK 620 +S LV ++K Sbjct: 607 DLESEDNFLVFATK 620 >gi|307637387|gb|ADN79837.1| DNA gyrase subunit A [Helicobacter pylori 908] gi|325995979|gb|ADZ51384.1| DNA gyrase subunit A [Helicobacter pylori 2018] gi|325997574|gb|ADZ49782.1| DNA gyrase subunit A [Helicobacter pylori 2017] Length = 828 Score = 424 bits (1089), Expect = e-116, Method: Compositional matrix adjust. Identities = 246/614 (40%), Positives = 378/614 (61%), Gaps = 42/614 (6%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 +N+ V + ++EE YLAY++S I RA+PD RDG KPVHRRI++AM E+GL A+KK Sbjct: 10 KNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHELGLTSKVAYKK 69 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 SARIVG+VIGK HPHGD +VYD+LVR+AQ F R L+ GQGNFG+IDGD+AAA RYTEA Sbjct: 70 SARIVGDVIGKYHPHGDTAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDNAAAMRYTEA 129 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 RMT+ +E IL+ +D+D +DF Y++ EP + PS+ PNLL NG +GIAVGMATSIP H Sbjct: 130 RMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGIAVGMATSIPPH 189 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 + EI +A +++NP ++++LE++ GPDFPTGGII + IVE+Y+ GRG +VRA Sbjct: 190 RIDEIIDALAHVLENPNAELDEILEFVKGPDFPTGGIIY-GKAGIVEAYKTGRGRVKVRA 248 Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVL 313 + VE+ + IV+ E+P+Q K++L+E+I++L K+I + ++RDES E +R+V+ Sbjct: 249 KVHVEKT-KNKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRDESDREGIRVVI 307 Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373 K ++ ++++ ++ L+ MET F + + + + P++ L +L+ +L HR+ + Sbjct: 308 ELKRDAM-SEIVLNHLYKLTTMETTFSIILLAI-YNKEPKIFTLLELLRLFLNHRKTTII 365 Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVDA 430 RR+ F ++ R IL+G LIA NIDEI+ +I+ P K ++ RF+L+E Q A Sbjct: 366 RRTIFELEKAKARAHILEGYLIALDNIDEIVRLIKTSPSPEVAKNALMERFTLSEIQSKA 425 Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490 IL +RL+ L LE +IK E NLL + ++ +L S + + E+ EVKE FS Sbjct: 426 ILEMRLQRLTGLERDKIKEEYQNLLELIDDLNGILKSEDRLNEVVKTELLEVKEQFSSP- 484 Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK---- 546 RRT E+ + ++ + +I EP+ V +S +G+++ VDL A + Sbjct: 485 ----RRT---EIQESYESIDTEDLIANEPMVVSMSYKGYVK-----RVDLKAYERQNRGG 532 Query: 547 ---------EGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQL 592 E D ++ A+T D +L ++ G K Y +P + ++ G+AI Sbjct: 533 KGKLSGSTYEDDFIENFFVANTHDILLFITNKGQLYHLKVYKIPEASRIA---MGKAIVN 589 Query: 593 LIDLNHNQDIVTAF 606 LI L ++ I+ Sbjct: 590 LISLAPDEKIMATL 603 >gi|42520999|ref|NP_966914.1| DNA gyrase subunit A [Wolbachia endosymbiont of Drosophila melanogaster] gi|42410740|gb|AAS14848.1| DNA gyrase, A subunit [Wolbachia endosymbiont of Drosophila melanogaster] Length = 900 Score = 424 bits (1089), Expect = e-116, Method: Compositional matrix adjust. Identities = 251/652 (38%), Positives = 379/652 (58%), Gaps = 67/652 (10%) Query: 13 VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72 +++N+ +S+ LE+ YL+YA+S I RAIPD+RDGFKPVHRRI++AMS G D G + Sbjct: 1 MQDNIVPISIVKELEDSYLSYAMSVIISRAIPDVRDGFKPVHRRILYAMSRAGFDAGKPY 60 Query: 73 KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132 KK+ARIVG+V+GK HPHGD ++YDSLVR+AQ F PL+ GQGNFG+IDGD A+ RYT Sbjct: 61 KKAARIVGDVMGKYHPHGDAAIYDSLVRMAQDFSLLLPLVDGQGNFGSIDGDPPASMRYT 120 Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192 EAR+ +V+ +L +DED V+FR Y+ ++EPVV P++FPNLL NG SG+AVGMAT+IP Sbjct: 121 EARLQKVSHFLLNDIDEDTVNFRPNYDGNETEPVVLPAEFPNLLVNGASGVAVGMATNIP 180 Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252 SHN+ EI +A + ++NPE+++++LLE + GPDFPTGG I+ R I ++ GRG V Sbjct: 181 SHNLGEIIDACILYVNNPEVTLDELLEVMPGPDFPTGGTIL-GRSGIRSAFATGRGSIVV 239 Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRI 311 + + +E++ + IV+ EIPYQV K +LIEKI EL+ KRI + +IRDES + +R+ Sbjct: 240 QGKTHIEDLPQDRQAIVIDEIPYQVNKGKLIEKIGELVKEKRIDGITEIRDESDKSGIRV 299 Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371 V+ K R+ + ++ I L+ + + F +N VL+ R P +M L I+ ++ R+EV Sbjct: 300 VIDLK-RNAEASFILNQILGLTPLRSSFSVNTLVLNNNR-PALMSLKEIITAFVDFRKEV 357 Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV--------------- 416 L RR+ FR++ + I GL IA L+IDE+I IIR P Sbjct: 358 LIRRTEFRLRKTREKAHIYIGLYIAVLSIDEVIKIIRGAKDPAEASRELLNKEWKTSNEI 417 Query: 417 -----MVSR---------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKID 462 ++S + LTE Q+ AIL+++L+ L LE+ ++++EL +++ ++ Sbjct: 418 NTIIELISDSASFLKDGVYRLTELQIKAILDMKLQRLTGLEKDKLEAELSSMINLIKEYI 477 Query: 463 SLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITV 522 + L SG++ +I ++E+K F+ R T E S AD + +I +E + + Sbjct: 478 AFLGSGEKLMKEIKNNLQEIKNRFAVP------RKTSIEESDADIEA--EDLIPQEDMVI 529 Query: 523 VISNRGWIRSLK-SH-------SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT 574 ++ G+I+ +K SH KE D + +T L S G+ Y Sbjct: 530 TVTMNGYIKRVKLSHYRTQRRGGKGKLGQGLKEEDVITELFVGNTHTSFLFFSNIGRVYR 589 Query: 575 LPAGNL----LSGRGH----------GEAIQLLIDL----NHNQDIVTAFVY 608 L L + RG GE I ++ L + NQ+IV A Y Sbjct: 590 LKVYKLPLAEPTARGRALVNIFPLSDGETITNIMPLPSENDENQNIVFATAY 641 >gi|319407150|emb|CBI80788.1| DNA gyrase subunit A [Bartonella sp. 1-1C] Length = 922 Score = 423 bits (1088), Expect = e-116, Method: Compositional matrix adjust. Identities = 254/708 (35%), Positives = 395/708 (55%), Gaps = 62/708 (8%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 ++ VS+ ++ YL YA+S I RA+PD+RDG KPVHRRI+HAM+EMGL F +++KSA Sbjct: 16 IEPVSIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAMNEMGLSFNKSYRKSA 75 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 +VGEV+GK HPHGD S+YD+LVR+AQ F R PLI GQGNFG++DGD AA RYTE R+ Sbjct: 76 GVVGEVMGKFHPHGDASIYDALVRMAQDFSLRNPLIDGQGNFGSVDGDPPAAMRYTECRL 135 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 +VAE +L +D++ VDF+D Y+ + EP+V P++FPNLL NG+ GIAVGMAT+IP HN+ Sbjct: 136 EKVAEELLADIDKETVDFQDNYDGREREPIVLPARFPNLLVNGSGGIAVGMATNIPPHNL 195 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ + +ALID+P I++++++E I GPDFPTGGII+ R + +Y GRG +RA+ Sbjct: 196 GEVIDGCIALIDSPNITLDEIIEIIPGPDFPTGGIIL-GRSGVRSAYETGRGSIIMRAKV 254 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316 +EE+ I+V+EIPYQ+ K+ +IEKIAEL+ KRI + D+RDES D V+ Sbjct: 255 DIEEIRNNRQAIIVSEIPYQINKATMIEKIAELVRDKRIEGISDLRDESDRDGYRVVIEL 314 Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376 R D+++ ++ + ++T F NM L+ G+ P+ M L +L+ +++ R EV+ RR+ Sbjct: 315 KREAVADIVLNQLYRYTPLQTSFGCNMVALNGGK-PEQMTLLDMLRAFVSFREEVVSRRT 373 Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV------------------ 418 + ++ R +L GL IA NIDEIIA+IR P+ V Sbjct: 374 KYLLRKARERAHVLVGLAIAVANIDEIIALIRTAPDPQTARVQLMERRWLAADVAPLIKL 433 Query: 419 -----------SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467 + ++L+E Q AIL LRL+ L L +I EL+ + + + +L+S Sbjct: 434 IDDPRHIIHEDNTYNLSEEQARAILELRLQRLTALGRDEIADELNKIGVDITEYLHILSS 493 Query: 468 GKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNR 527 + + E+ ++E F RRT F + + +I E + V +S+ Sbjct: 494 RLRIMGIVKDELSTLREEFVTP-----RRTVF---GFGNAEMNNEDLIVPEDMVVTVSHS 545 Query: 528 GWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYT 574 G+I R+ + S + K+ D + ++T +L S+ G K + Sbjct: 546 GYIKRVPLNTYRAQRRGGKGRSGMSTKDEDFVTRLFVSNTHTPVLFFSSRGIVYKEKVWR 605 Query: 575 LPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD------STCKLLVVSSKGNAFIVEE 628 LP G + + G A+ ++ L + I T S ++ +++G + Sbjct: 606 LPIG---TPQSRGRALVNMLPLQEGERITTIMPLPEDEAGWSELDVMFATTRGTVRRNKL 662 Query: 629 SEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSI 675 S+ I R GK +K+ E+++ V T D V + N + + F + Sbjct: 663 SDFIQVNRNGKIAMKLDDEDEILSVETCTERDDVVLTTANGQCIRFPV 710 >gi|317009283|gb|ADU79863.1| DNA gyrase subunit A [Helicobacter pylori India7] Length = 826 Score = 423 bits (1088), Expect = e-116, Method: Compositional matrix adjust. Identities = 245/623 (39%), Positives = 381/623 (61%), Gaps = 42/623 (6%) Query: 6 ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65 + N++ +N+ V + ++EE YLAY++S I RA+PD RDG KPVHRRI++AM E+G Sbjct: 1 MQNNSVNETKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHELG 60 Query: 66 LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125 L A+KKSARIVG+VIGK HPHGD +VYD+LVR+AQ F R L+ GQGNFG+IDGD+ Sbjct: 61 LTSKVAYKKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDN 120 Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185 AAA RYTEARMT+ +E IL+ +D+D +DF Y++ EP + PS+ PNLL NG +GIAV Sbjct: 121 AAAMRYTEARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGIAV 180 Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245 GMATSIP H + EI +A + +++NP ++++LE++ GPDFPTGGII + I+E+Y+ Sbjct: 181 GMATSIPPHRIDEIIDALIHVLENPNAELDEILEFVKGPDFPTGGIIY-GKAGIIEAYKT 239 Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305 GRG +VRA+ VE+ + IV+ E+P+Q K++L+E+I++L K+I + ++RDES Sbjct: 240 GRGRVKVRAKVHVEKT-KNKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRDES 298 Query: 306 -AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364 E +R+V+ K ++ ++++ ++ L+ MET F + + + + P++ L +L + Sbjct: 299 DREGIRVVIELKRDAM-SEIVLNHLYKLTTMETTFSIILLAI-YNKEPKIFTLLELLCLF 356 Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRF 421 L HR+ ++ RR+ F ++ R IL+G LIA NIDEI+ +I+ P K ++ RF Sbjct: 357 LNHRKTIIIRRTIFELEKAKARAHILEGYLIALDNIDEIVQLIKTSQSPEAAKNALMERF 416 Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481 +L+E Q AIL +RL+ L LE +IK E NLL ++ +L S + + E+ E Sbjct: 417 TLSEIQSKAILEMRLQRLTGLERDKIKEEYQNLLELISDLNGILKSEDRLNGVVKTELLE 476 Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS 541 VKE FS RRT E+ + + + +I EP+ V +S +G+++ VDL Sbjct: 477 VKEQFSSP-----RRT---EIQESYENIDIEDLIANEPMVVSMSYKGYVK-----RVDLK 523 Query: 542 ALHFK-------------EGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSG 583 A + E D ++ A+T D +L ++ G K Y +P + ++ Sbjct: 524 AYEKQNRGGKGKLSGSTYEDDFIENFFVANTHDILLFITNKGQLYHLKVYKIPEASRIA- 582 Query: 584 RGHGEAIQLLIDLNHNQDIVTAF 606 G+A+ LI L ++ I+ Sbjct: 583 --MGKAVVNLISLAPDEKIMATL 603 >gi|32267132|ref|NP_861164.1| DNA gyrase subunit A [Helicobacter hepaticus ATCC 51449] gi|32263185|gb|AAP78230.1| DNA gyrase [Helicobacter hepaticus ATCC 51449] Length = 824 Score = 423 bits (1088), Expect = e-116, Method: Compositional matrix adjust. Identities = 278/772 (36%), Positives = 448/772 (58%), Gaps = 49/772 (6%) Query: 10 NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69 ++L+E+N V + +++E YL Y++S I RA+PD +DG KPVHRRI++AM+E+ L Sbjct: 2 DSLIEDNNIDVKIDDSIKESYLDYSMSVIVGRALPDAKDGLKPVHRRILYAMNELNLSPR 61 Query: 70 AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129 +KKSARIVG+VIGK HPHGD +VYD+LVR+AQ F R L+ GQGNFG+IDGD AAA Sbjct: 62 RPYKKSARIVGDVIGKYHPHGDTAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDGAAAM 121 Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189 RYTEARMT +E +L+ +D+D V+F Y+ EP V P++FPNLL NG+SGIAVGMAT Sbjct: 122 RYTEARMTSASEEMLRDIDKDTVEFVPNYDNTLYEPDVLPTRFPNLLVNGSSGIAVGMAT 181 Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249 SIP H + EI +A + +ID +E LL+ + GPDFPTGGII + I+E+YR GRG Sbjct: 182 SIPPHRIDEIIDALIMVIDKNTQDVEDLLDIVQGPDFPTGGIIY-GKAGILEAYRTGRGR 240 Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AED 308 RVRA+ +E+ + IV+ E+PYQV K++L+E+I+EL K I + ++RDES E Sbjct: 241 IRVRAKVHIEKT-KTKDVIVIDEVPYQVNKAKLVEQISELAKEKVIDGISEVRDESDREG 299 Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368 +R+V+ K ++ ++++ +F + ME+ F + + ++ + P++ L +L+ ++AHR Sbjct: 300 IRVVIELKRDAM-SEIVLNHLFKSTTMESTFGIILLAIN-NKEPKIFNLLELLQIFIAHR 357 Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTE 425 + ++ RRS F ++ R IL+GL+IA NIDE+I IR + D+ K +VS+F L+E Sbjct: 358 KTIIIRRSIFELEKAKARAHILEGLIIALDNIDEVIKTIRASKDTDEAKNALVSKFKLSE 417 Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485 Q AIL +RL+ L LE +I E L A+ ++S+L S + + + E+ E+KE Sbjct: 418 LQAKAILEMRLQRLTGLERDKINEEYAQLQAQIAYLESILKSEDKLKSIVKEELLEIKEK 477 Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--LKSHSVDLSAL 543 FS +RRT ++ A + +I E + V +S+RG+++ LK++ Sbjct: 478 FST-----KRRT---QIEEDYDAIDVEDLIPNEKVVVTMSHRGYVKRVLLKTYEKQNRGG 529 Query: 544 HFK------EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL-LSGRGH-GEAIQLLID 595 K + D ++ A+T D I+ ++ G+ Y L + +GR G+A+ LI+ Sbjct: 530 KGKISGNTHDDDFIESFFVANTHDTIMFVTNKGQLYWLKVYKIPEAGRTAIGKAVVNLIN 589 Query: 596 LNHNQDI---VTAFVYDSTCKLLVVSSKGNAFIVEESEI--IANTRK-GKTFLKVSSEEK 649 L ++ I +T ++ L+ + G +V+ + + N R G + + ++ Sbjct: 590 LQADEKIMATITTTDFNEDKSLVFFTKNG---VVKRTNLKEYGNIRSIGVRAINLDENDE 646 Query: 650 MKLVVKVTGDHVA--VVGENRKLLI-FSIDQIPEM---SRG-KGVRLQSYKDGGISDVIC 702 + + + H+ + + + I F ++++ E+ SRG G++ ++ +D I+ Sbjct: 647 L-VTAHIVDSHIKELFIATYQGMCIRFGVEELREIGRVSRGVTGIKFKASEDCVIAATTI 705 Query: 703 FKICEGLTWIDSAGRSYNRSENDLLG--WLGKRGGVGSLVPKGFPRSGKFLS 752 + L + G + L G L R G G +V K PR+GK +S Sbjct: 706 ANDTDKLLTVSERG----IGKQTLAGEYRLQSRAGKGVIVMKLTPRTGKLVS 753 >gi|257424202|ref|ZP_05600631.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus 55/2053] gi|257426879|ref|ZP_05603281.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus 65-1322] gi|257429515|ref|ZP_05605902.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 68-397] gi|257432162|ref|ZP_05608525.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus E1410] gi|257435123|ref|ZP_05611174.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus M876] gi|282907053|ref|ZP_06314901.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus Btn1260] gi|282910032|ref|ZP_06317840.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus WW2703/97] gi|282912280|ref|ZP_06320076.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus WBG10049] gi|282912920|ref|ZP_06320712.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus M899] gi|282922548|ref|ZP_06330238.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus C101] gi|283959490|ref|ZP_06376931.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus A017934/97] gi|293497973|ref|ZP_06665827.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus 58-424] gi|293550172|ref|ZP_06672844.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus M1015] gi|297589195|ref|ZP_06947836.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Staphylococcus aureus subsp. aureus MN8] gi|257273220|gb|EEV05322.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus 55/2053] gi|257276510|gb|EEV07961.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus 65-1322] gi|257279996|gb|EEV10583.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 68-397] gi|257283041|gb|EEV13173.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus E1410] gi|257285719|gb|EEV15835.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus M876] gi|282314769|gb|EFB45155.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus C101] gi|282323020|gb|EFB53339.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus M899] gi|282323976|gb|EFB54292.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus WBG10049] gi|282326098|gb|EFB56403.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus WW2703/97] gi|282329952|gb|EFB59473.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus Btn1260] gi|283789082|gb|EFC27909.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus A017934/97] gi|290919219|gb|EFD96295.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus M1015] gi|291096904|gb|EFE27162.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus 58-424] gi|297577706|gb|EFH96419.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Staphylococcus aureus subsp. aureus MN8] gi|312436853|gb|ADQ75924.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Staphylococcus aureus subsp. aureus TCH60] gi|315195232|gb|EFU25620.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus CGS00] Length = 886 Score = 423 bits (1088), Expect = e-116, Method: Compositional matrix adjust. Identities = 252/670 (37%), Positives = 400/670 (59%), Gaps = 37/670 (5%) Query: 26 LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85 + E +L YA+S I RA+PD+RDG KPVHRRI++ ++E G+ ++KKSARIVG+V+GK Sbjct: 18 MRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDKSYKKSARIVGDVMGK 77 Query: 86 LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145 HPHGD S+Y+++VR+AQ F RYPL+ GQGNFG++DGD AAA RYTEARMT++ +L+ Sbjct: 78 YHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEARMTKITLELLR 137 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 +++D +DF D Y+ + EP V P++FPNLLANG SGIAVGMAT+IP HN+ E+ L+ Sbjct: 138 DINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATNIPPHNLTELINGVLS 197 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265 L NP+ISI +L+E I GPDFPT G+I+ + I +Y GRG ++R+R +EE G G Sbjct: 198 LSKNPDISIAELMEDIEGPDFPTAGLIL-GKSGIRRAYETGRGSIQMRSRAVIEERGGGR 256 Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA--EDVRIVLFPKNRSLDPD 323 IVVTEIP+QV K+R+IEKIAEL+ K+I + D+RDE++ VR+V+ + + + Sbjct: 257 QRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRVVIDVR-KDANAS 315 Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383 +++ +++ + ++T F +NM L GR P+++ L L +L H++ V+ RR+ + ++ Sbjct: 316 VILNNLYKQTPLQTSFGVNMIALVNGR-PKLINLKEALVHYLEHQKTVVRRRTQYNLRKA 374 Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVDAILNLRLRSLR 440 R IL+GL IA +IDEII+ IR + K M S RF L+E Q AIL++RLR L Sbjct: 375 KDRAHILEGLRIALDHIDEIISTIRESETDKVAMESLQQRFKLSEKQAQAILDMRLRRLT 434 Query: 441 KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500 LE +I++E + LL +++++L + + E+ E+++ F RRT Sbjct: 435 GLERDKIEAEYNELLNYISELEAILADEEVLLQLVRDELTEIRDRFGDD-----RRT--- 486 Query: 501 EVSRADKATLQ-QAMIEKEPITVVISNRGWIRSLKSHSV--------DLSALHFKEGDSL 551 E+ L+ + +I +E I + +S+ +I+ L + + ++ E D + Sbjct: 487 EIQLGGFEDLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRAQNRGGRGVQGMNTLEEDFV 546 Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAFV-- 607 + T D +L + G+ Y L + LS + G + I+L +++ I T Sbjct: 547 SQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIELENDEIISTMIAVK 606 Query: 608 -YDSTCKLLVVSSKGNAFIVEESEIIAN----TRKGKTFLKVSSEEKMKLVVKVTGDHVA 662 +S LV ++K +V+ S ++N R GK + ++++ V +G Sbjct: 607 DLESEDNFLVFATKRG--VVKRS-ALSNFSRINRNGKIAISFREDDELIAVRLTSGQEDI 663 Query: 663 VVGENRKLLI 672 ++G + LI Sbjct: 664 LIGTSHASLI 673 >gi|330445625|ref|ZP_08309277.1| DNA gyrase, A subunit [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328489816|dbj|GAA03774.1| DNA gyrase, A subunit [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 876 Score = 423 bits (1088), Expect = e-116, Method: Compositional matrix adjust. Identities = 252/638 (39%), Positives = 377/638 (59%), Gaps = 65/638 (10%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + +++ L+ YL YA+S I RA+PD+RDG KPVHRR++ AM+ +G D+ A+KKSA Sbjct: 8 ITPINIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKKSA 67 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG+IDGDSAAA RYTE RM Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVRM 127 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 ++A +L +D++ VD+ Y+ + P V P+K PNLL NG+SGIAVGMAT+IP HN+ Sbjct: 128 AKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ + LA I++ +I+I++L+EYI GPDFPT +I R+ IV++Y+ GRG +RA+ Sbjct: 188 GEVIDGCLAYINDEDITIDQLMEYIPGPDFPTAAMI-SGRKGIVDAYKTGRGKVYMRAKA 246 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFP 315 +E G IVV EIPYQV K+RLIEKIAEL+ K++ + +RDES +D +RIV+ Sbjct: 247 EIEADKNGKETIVVHEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIEC 306 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 K ++ ++++ +++ + ++T F +NM L G+ P++ L +LK ++ HRREV+ RR Sbjct: 307 KRDAVG-EVVLNNLYAQTQLQTTFGINMVALDNGQ-PKIFNLKEMLKCFVNHRREVVTRR 364 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR------------ 420 + + ++ R IL+GL +A NIDEII ++R P K +++R Sbjct: 365 TIYELRKARDRAHILEGLALALANIDEIIELVRRAPTPAEAKAGLIARGWDLGNVAAMLE 424 Query: 421 ----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458 + LTE Q AIL+LRL L LE +I E LL E Sbjct: 425 RAGTDAARPEWLEAQFGIRDNQYYLTEQQAQAILDLRLHKLTGLEHEKILEEYKALLDEI 484 Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518 ++ +L+S ++ I E+ VKE FS + RRT E++ A + +I +E Sbjct: 485 AELMHILSSSERLMEVIREELELVKEQFSDA-----RRT---EITAASHDIDMEDLITQE 536 Query: 519 PITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570 + V +S+ G+++ + + +A KE D ++ L A+T D IL S+ G Sbjct: 537 DVVVTLSHEGYVKYQILSDYEAQRRGGKGKAATRMKEEDFIERLLVANTHDTILCFSSRG 596 Query: 571 -----KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIV 603 K Y LP L S G+ I ++ L N+ I Sbjct: 597 RMYWLKVYQLP---LASRTARGKPIVNILPLEENERIT 631 >gi|289577275|ref|YP_003475902.1| DNA gyrase subunit alpha [Thermoanaerobacter italicus Ab9] gi|289526988|gb|ADD01340.1| DNA gyrase, A subunit [Thermoanaerobacter italicus Ab9] Length = 805 Score = 423 bits (1088), Expect = e-116, Method: Compositional matrix adjust. Identities = 238/616 (38%), Positives = 377/616 (61%), Gaps = 36/616 (5%) Query: 12 LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71 + E+ V V + +++ Y+ YA+S I RA+PD+RDG KPVHRRI++AM+E+GL Sbjct: 1 MSEDKVIPVDIEDEMKKSYIDYAMSVIVGRALPDVRDGLKPVHRRILYAMNELGLTPDKP 60 Query: 72 FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131 +KKS +VGEV+GK HPHGD +VYD+LVRLAQ F R LI G GNFG+IDGD AA RY Sbjct: 61 YKKSVAVVGEVLGKYHPHGDAAVYDTLVRLAQDFSMRETLIDGHGNFGSIDGDPPAAMRY 120 Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191 TEAR++++A +L ++++ VDF ++E EPVV PS+FPNLL NG+ GIAVGMAT+I Sbjct: 121 TEARLSKIALEMLTDINKETVDFVPNFDETLKEPVVLPSRFPNLLVNGSQGIAVGMATNI 180 Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251 P HN+ E+ + +A IDNP IS+++L++YI GPDFPTGG+I+ R+ I E+Y GRG Sbjct: 181 PPHNLGEVIDGIIAYIDNPYISVDELMKYIKGPDFPTGGVIL-GRDGIKETYETGRGKIV 239 Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311 VRA+ +EE G IV+TEIPY V K++LIEKIAEL+ K I + D+RDES + Sbjct: 240 VRAKAEIEE-HHGKTRIVITEIPYMVLKAKLIEKIAELVREKHIEGISDLRDESDRNGMK 298 Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371 V+ + ++P +++ ++M + M+ F M L G P+++ L I+++++ H+ +V Sbjct: 299 VVIELKKDVNPKVILNKLYMHTQMQQTFGAIMLALVDGE-PKILNLKQIIEKYVDHQADV 357 Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLTENQV 428 + RR+ F ++ + R IL+GL IA +IDE+I IIR+ E K ++ +F L+E Q Sbjct: 358 VTRRTKFDLRKAEERAHILEGLKIALDHIDEVINIIRSSKTEAIAKQNLMDKFGLSEKQA 417 Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488 AI+++RL L LE +++ EL L+ + +++ +L ++ I E+ E+K+ ++ Sbjct: 418 QAIVDMRLGRLTGLERQKVEDELKELMEKIKELKGILADERKVLEIIKKELLEIKDKYAT 477 Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSVDL 540 R+T V++ ++ L+ +++ E + V +++ G+I+ + K + Sbjct: 478 P-----RKTNI--VAKEEELDLED-LVQLEDVVVTMTHYGYIKRMPLDTYKAQKRGGKGI 529 Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-------------GH 586 + +E D ++ T DR+L + GK Y+L ++ +GR Sbjct: 530 LGISTREDDFVRDIFITTTHDRLLFFTNKGKVYSLRTIDIPETGRQAKGTAIVNLIQIAQ 589 Query: 587 GEAIQLLIDLNHNQDI 602 GE + +I L +QDI Sbjct: 590 GEKVTAVIPLKKSQDI 605 >gi|332685541|ref|YP_004455315.1| DNA gyrase subunit A [Melissococcus plutonius ATCC 35311] gi|332369550|dbj|BAK20506.1| DNA gyrase subunit A [Melissococcus plutonius ATCC 35311] Length = 815 Score = 423 bits (1088), Expect = e-116, Method: Compositional matrix adjust. Identities = 225/572 (39%), Positives = 354/572 (61%), Gaps = 20/572 (3%) Query: 13 VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72 + EN++ V+L ++E ++ YA+S I RA+PD+RDG KPVHRRI++ M+E+G+ Sbjct: 5 MRENIQDVNLTGEMKESFIDYAMSVIVSRALPDVRDGLKPVHRRILYGMNELGVTPDKPH 64 Query: 73 KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132 KKSARIVG+V+GK HPHGD ++Y+S+VR+AQPF RY LI G GNFG++DGD AAA RYT Sbjct: 65 KKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRYMLIDGHGNFGSVDGDGAAAMRYT 124 Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192 EARM+++A +L+ +++D VD+ Y++ + EP V P++FPNLL NGT+GIAVGMAT+IP Sbjct: 125 EARMSKIALEMLRDINKDTVDYHGNYDDTEREPDVLPARFPNLLVNGTTGIAVGMATNIP 184 Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252 HN+ E+ EA L+D PE++ +L+E + GPDFPTGG+++ + I +Y G+G V Sbjct: 185 PHNLAEVVEAIDLLMDKPEVTTNELMEVLPGPDFPTGGLVM-GKSGIRRAYETGKGSITV 243 Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312 RA+ + E+ G I+VTE+PY V K+RLIE+I+EL KRI + D+RDES+ + + Sbjct: 244 RAKVELTELPNGKERILVTELPYMVNKARLIERISELHRDKRIEGITDLRDESSREGMRI 303 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 + R + +++ +++ L+ ++T F NM + G VP+++ L IL+ ++ H++ V+ Sbjct: 304 IIDVRRDVSASVVLNNLYKLTALQTSFGFNMLAIEKG-VPKILSLKQILENYVEHQKVVI 362 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVD 429 RR+ F + R IL+GL IA +IDEIIA IR ++D+ K ++ RF L++ Q Sbjct: 363 KRRTIFDKKKAQSRAHILEGLRIALDHIDEIIATIRQSQSDDEAKSALIGRFELSDRQAQ 422 Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489 AIL++RLR L LE +I+ E LL ++ +L S ++ I E+ ++++ FS Sbjct: 423 AILDMRLRRLTGLERDKIEQEYQELLKLISDLEDILASPERIVEIIKKELADIRDRFSD- 481 Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DLS 541 +RRT EK + V ++N G+I+ + + + Sbjct: 482 ----KRRTELLIGEVLSLEDEDLIEEEK--MVVTLTNNGYIKRMANSEFRAQRRGGRGVQ 535 Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573 + D +K + T D +L + +GK Y Sbjct: 536 GMGVHADDFVKNLVSCSTHDTLLFFTNNGKVY 567 >gi|73661315|ref|YP_300096.1| DNA gyrase subunit A [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|72493830|dbj|BAE17151.1| DNA gyrase subunit A [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 897 Score = 423 bits (1088), Expect = e-116, Method: Compositional matrix adjust. Identities = 238/608 (39%), Positives = 374/608 (61%), Gaps = 25/608 (4%) Query: 12 LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71 L E + ++ + E +L YA+S I RA+PD+RDG KPVHRRI++ + E G+ + Sbjct: 4 LPESRINERNITSEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLHEQGMTPDKS 63 Query: 72 FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131 +KKSARIVG+V+GK HPHGD S+Y+++VR+AQ F RYPL+ GQGNFG++DGD AAA RY Sbjct: 64 YKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRY 123 Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191 TEARM+++ +L+ +++D +DF D Y+ + EP V P++FPNLL NG SGIAVGMAT+I Sbjct: 124 TEARMSKITLELLRDLNKDTIDFIDNYDGNEREPSVLPARFPNLLVNGASGIAVGMATNI 183 Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251 P HN+ E+ L+L NP+I+I +L+E I GPDFPT GII+ + I ++ GRG + Sbjct: 184 PPHNLTEVINGILSLSYNPDITIAELMEDIQGPDFPTAGIIL-GKSGIRRAFETGRGSIQ 242 Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA--EDV 309 +R+R +EE G G IVVTE+PYQV K+R+IEKIAEL K+I + D+RDE++ V Sbjct: 243 LRSRAEIEERGGGRQRIVVTEVPYQVNKARMIEKIAELARDKKIDGITDLRDETSLRTGV 302 Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369 R+V+ + + + +++ +++ + ++T F +NM L GR P+++ L L E+L H++ Sbjct: 303 RVVIDIR-KDANASVVLNNLYKQTPLQTSFGVNMIALVNGR-PKLISLKDALVEYLEHQK 360 Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTEN 426 V+ RR+ + ++ R IL+GL IA +IDEII +IR D K M S +F L+E Sbjct: 361 VVVRRRTEYNLKKALDRAHILEGLRIALDHIDEIIRVIRESDNDKIAMASLQEQFKLSER 420 Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486 Q AIL++RLR L LE +I++E + L+A E++ S+L ++ + E+ +V+E + Sbjct: 421 QAQAILDMRLRRLTGLERDKIEAEYNELIAYIEELKSILADEEKLLQIVRDELIDVRERY 480 Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV-------- 538 G R T ++ D + +I +E I + +S+ +I+ L + Sbjct: 481 ------GDERKTEIQLGGLDDIE-DEDLIPEEQIVITLSHNNYIKRLPVSTYRAQHRGGR 533 Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDL 596 + ++ E D + + T D +L + G+ Y L + LS + G + I+L Sbjct: 534 GVQGMNTLEEDFVSQLVTLSTHDNVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIEL 593 Query: 597 NHNQDIVT 604 ++++ I T Sbjct: 594 DNDESIST 601 >gi|15645324|ref|NP_207495.1| DNA gyrase subunit A [Helicobacter pylori 26695] gi|2507466|sp|P48370|GYRA_HELPY RecName: Full=DNA gyrase subunit A gi|2313826|gb|AAD07753.1| DNA gyrase, sub A (gyrA) [Helicobacter pylori 26695] Length = 827 Score = 423 bits (1088), Expect = e-116, Method: Compositional matrix adjust. Identities = 245/614 (39%), Positives = 378/614 (61%), Gaps = 42/614 (6%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 +N+ V + ++EE YLAY++S I RA+PD RDG KPVHRRI++AM E+GL A+KK Sbjct: 10 KNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHELGLTSKVAYKK 69 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 SARIVG+VIGK HPHGD +VYD+LVR+AQ F R L+ GQGNFG+IDGD+AAA RYTEA Sbjct: 70 SARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDNAAAMRYTEA 129 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 RMT+ +E IL+ +D+D +DF Y++ EP + PS+ PNLL NG +GIAVGMATSIP H Sbjct: 130 RMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGIAVGMATSIPPH 189 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 + EI +A + +++NP ++++LE++ GPDFPTGGII + I+E+Y+ GRG +VRA Sbjct: 190 RMDEIIDALVHVLENPNAGLDEILEFVKGPDFPTGGIIY-GKAGIIEAYKTGRGRVKVRA 248 Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVL 313 + VE+ + IV+ E+P+Q K++L+E+I++L K+I + ++RDES E +R+V+ Sbjct: 249 KVHVEKT-KNKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRDESDREGIRVVI 307 Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373 K ++ ++++ ++ L+ MET F + + + + P++ L +L +L HR+ ++ Sbjct: 308 ELKRDAM-SEIVLNHLYKLTTMETTFSIILLAI-YNKEPKIFTLLELLHLFLNHRKTIII 365 Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVDA 430 RR+ F ++ R IL+G LIA NIDEI+ +I+ P K ++ RF+L+E Q A Sbjct: 366 RRTIFELEKAKARAHILEGYLIALDNIDEIVRLIKTSQSPEAAKNALMERFTLSEIQSKA 425 Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490 IL +RL+ L LE +IK E NLL + ++ +L S + + E+ EVKE FS Sbjct: 426 ILEMRLQRLTGLERDKIKEEYQNLLELIDDLNGILKSEDRLNGVVKTELLEVKEQFSSP- 484 Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK---- 546 RRT E+ + + + +I EP+ V +S +G+++ VDL A + Sbjct: 485 ----RRT---EIQESYENIDIEDLIANEPMVVSMSYKGYVK-----RVDLKAYEKQNRGG 532 Query: 547 ---------EGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQL 592 E D ++ A+T D +L ++ G K Y +P + ++ G+AI Sbjct: 533 KGKLSGSTYEDDFIENFFVANTHDILLFITNKGQLYHLKVYKIPEASRIA---MGKAIVN 589 Query: 593 LIDLNHNQDIVTAF 606 LI L ++ I+ Sbjct: 590 LISLAPDEKIMATL 603 >gi|317178941|dbj|BAJ56729.1| DNA gyrase subunit A [Helicobacter pylori F30] Length = 828 Score = 423 bits (1088), Expect = e-116, Method: Compositional matrix adjust. Identities = 248/625 (39%), Positives = 379/625 (60%), Gaps = 46/625 (7%) Query: 4 DNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63 DN+ N +N+ V + ++EE YLAY++S I RA+PD RDG KPVHRRI++AM E Sbjct: 3 DNLINET----KNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHE 58 Query: 64 MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123 +GL A+KKSARIVG+VIGK HPHGD +VYD+LVR+AQ F R L+ GQGNFG+IDG Sbjct: 59 LGLTSKVAYKKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSIDG 118 Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183 D+AAA RYTEARMT+ +E IL+ +D+D +DF Y++ EP + PS+ PNLL NG +GI Sbjct: 119 DNAAAMRYTEARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGI 178 Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243 AVGMATSIP H + EI +A + +++NP ++++LE++ GPDFPTGGII + I+E+Y Sbjct: 179 AVGMATSIPPHRIDEIIDALVHVLENPNAGLDEILEFVKGPDFPTGGIIY-GKAGIIEAY 237 Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303 + GRG +VR + VE+ + IV+ E+P+Q K++L+E+I++L K+I + ++RD Sbjct: 238 KTGRGRVKVRTKVHVEKT-KNKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRD 296 Query: 304 ES-AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362 ES E +R+V+ K ++ ++++ ++ L+ MET F + + + + P++ L +L+ Sbjct: 297 ESDREGIRVVIELKRDAM-SEIVLNHLYKLTTMETTFSIILLAI-YNKEPKIFTLLELLR 354 Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVS 419 +L HR+ ++ RR+ F ++ R IL+G LIA NIDEI+ I+ P K ++ Sbjct: 355 LFLNHRKTIIIRRTIFELEKAKARAHILEGYLIALDNIDEIVRFIKTSQSPEVAKNALIE 414 Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479 RF+L+E Q AIL +RL+ L LE +IK E NLL ++ +L S + + E+ Sbjct: 415 RFTLSEIQSKAILEMRLQRLTGLERDKIKEEYQNLLELISDLNGILKSEDRLNEVVKTEL 474 Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539 EVKE FS +RRT EV + +I EP+ V +S +G+++ VD Sbjct: 475 LEVKEQFS-----SQRRTEIQEVYENIDI---EDLIANEPMVVSMSYKGYVK-----RVD 521 Query: 540 LSALHFK-------------EGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLL 581 L A + E D ++ A+T D +L ++ G K Y +P + + Sbjct: 522 LKAYERQNRGGKGKLSGNTYEDDFIENFFVANTHDILLFITNKGQLYHLKVYKIPEASRI 581 Query: 582 SGRGHGEAIQLLIDLNHNQDIVTAF 606 + G+AI LI L ++ I+ Sbjct: 582 A---MGKAIVNLISLAPDEKIMATL 603 >gi|303246811|ref|ZP_07333088.1| DNA gyrase, A subunit [Desulfovibrio fructosovorans JJ] gi|302491828|gb|EFL51708.1| DNA gyrase, A subunit [Desulfovibrio fructosovorans JJ] Length = 814 Score = 423 bits (1087), Expect = e-116, Method: Compositional matrix adjust. Identities = 243/599 (40%), Positives = 365/599 (60%), Gaps = 33/599 (5%) Query: 26 LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85 L++ YL Y+LS I RAIPD+RDG KPVHRRI++AM E+ F +KKSAR+VG+VIGK Sbjct: 11 LKKSYLEYSLSVIIGRAIPDVRDGLKPVHRRILYAMHELSNTFNRPYKKSARVVGDVIGK 70 Query: 86 LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145 HPHGDQSVYD+LVR+AQ F R P++ GQGNFG+IDGD+AAA RYTE RM+++A L Sbjct: 71 YHPHGDQSVYDALVRMAQNFSMRDPIVDGQGNFGSIDGDAAAAMRYTEVRMSRLASEFLA 130 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 ++++ V FR Y+ +EP V P+K PNLL NG+SGIAVGMAT+IP HN+ E+C+ L Sbjct: 131 DIEKETVGFRPNYDNSLNEPEVLPTKVPNLLLNGSSGIAVGMATNIPPHNLGELCDGLLH 190 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265 +DNP I +LL + GPDFPTG I + ++E+Y GRG ++R + +EE + Sbjct: 191 QLDNPTCDINELLALVKGPDFPTGASIYGGK-GLIEAYTTGRGSIKIRGKAEIEERKKDH 249 Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFPKNRSLDPDL 324 +V+ EIPY + KS L+EKIA LI RI + D+RDES + +RIVL K + + PD+ Sbjct: 250 QSVVIREIPYALNKSSLVEKIAALINEGRIEGVSDLRDESDRKGIRIVLDLK-KGVIPDI 308 Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384 ++ +++ + +ET F +NM V++ R P ++ + +L+ +L+HRREV+ RR++F ++ + Sbjct: 309 VINALYKYTPLETSFGINMLVVADNR-PALLNIQQVLEHFLSHRREVVLRRTAFDLRKSE 367 Query: 385 RRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAILNLRLRSLRK 441 R IL+GL IA NIDE+++IIR N + + ++ RF L+E Q AIL++RL+ L Sbjct: 368 ERAHILEGLRIALDNIDEVVSIIRASKNAIEARERLMERFGLSERQAQAILDMRLQRLTN 427 Query: 442 LEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCE 501 LE ++ E + L+ E + S+L + + I EI E+K+ ++ R+T E Sbjct: 428 LERQKLIDEYNELIKLIEYLRSILENEEVLRGVIRDEITEIKDKYATP-----RKTEILE 482 Query: 502 ----VSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK-------EGDS 550 ++ D +I E + + +S RG+I+ K S K GD Sbjct: 483 DLEGINILD-------LIPDEDVVITLSRRGYIKRTKVDSYQQQKRGGKGVAGVSTSGDD 535 Query: 551 LKIALHAHTTDRILLLSTD-GKAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAF 606 + A T + LLL T+ G+ + LP + G+ G I L+ ++ + + TA Sbjct: 536 FVQSFCATTNHQQLLLFTNLGRMFMLPVHQIPEGQRTAKGAHIANLLPMDKEEFVATAL 594 >gi|253582586|ref|ZP_04859807.1| DNA topoisomerase [Fusobacterium varium ATCC 27725] gi|251835456|gb|EES63996.1| DNA topoisomerase [Fusobacterium varium ATCC 27725] Length = 837 Score = 423 bits (1087), Expect = e-116, Method: Compositional matrix adjust. Identities = 223/572 (38%), Positives = 361/572 (63%), Gaps = 23/572 (4%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 NV + ++E YL Y++S I RA+PD+RDG KPVHRRI+ AMSE+G+ + A+KKS Sbjct: 3 NVNNRYIEDEMKESYLDYSMSVIVSRALPDVRDGMKPVHRRILFAMSELGMTYDKAYKKS 62 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 ARIVGEV+GK HPHGD +VY ++VR+AQ F RY L+ G GNFG+IDGDSAAA RYTEAR Sbjct: 63 ARIVGEVLGKYHPHGDSAVYGTMVRMAQDFNYRYLLVDGHGNFGSIDGDSAAAMRYTEAR 122 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 M +++ ++ +D++ +DFR +++ EP V P+K PNLL NG +GIAVGMAT+IP HN Sbjct: 123 MARISNELIDDIDKNTIDFRKNFDDSLDEPTVLPAKLPNLLLNGATGIAVGMATNIPPHN 182 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 + E+ + LALIDNPE++ L+EYI GPDFPTGGII + ++ I ++Y GRG RVR + Sbjct: 183 LGELVDGILALIDNPELTPLNLMEYIKGPDFPTGGII-DGQKGIRDAYMTGRGKVRVRGK 241 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314 +EE G I++ EIPYQ+ K+ LIE+IA+L+ KR+ + D+RDES D +R+V+ Sbjct: 242 VEIEEQKNGKAFIIIKEIPYQLNKATLIERIADLVKDKRVTGITDLRDESDRDGIRVVIE 301 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K + +P+L++ ++ ++++ F + M L + P+V+ L IL+E+L HR EV+ R Sbjct: 302 VK-KGEEPELILNKLYKYTELQNTFGIIMLAL-VNNAPKVLNLKEILQEYLKHRFEVVTR 359 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAI 431 R+ F + ++R IL+G IA NID II IIR + ++ + +++ +++ ++ Q AI Sbjct: 360 RTKFDLDKAEKRAHILQGYKIALDNIDRIIEIIRGSSDGNQARELLIEKYAFSDVQARAI 419 Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491 L+++L+ L LE +I +E + ++ +L+ + + I E+ +KE ++ Sbjct: 420 LDMKLQRLTGLERGKIDAEHAEIEKYIAELREILSHDSKIYEIIKEELLYLKEKYNDD-- 477 Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSVDLSAL 543 R T E R + L + +I+ E + + ++N+G+++ + K +++ Sbjct: 478 ----RRTLIENERME--ILPEDLIKDENVILTLTNKGYVKRMEVSKYKAQKRGGKGVASQ 531 Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575 + E D ++ A D +++ + G+ + + Sbjct: 532 NTIEDDFVESIESASNLDTLMIFTNQGRVFNI 563 >gi|300088462|ref|YP_003758984.1| DNA gyrase subunit A [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299528195|gb|ADJ26663.1| DNA gyrase, A subunit [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 814 Score = 423 bits (1087), Expect = e-116, Method: Compositional matrix adjust. Identities = 248/695 (35%), Positives = 404/695 (58%), Gaps = 29/695 (4%) Query: 12 LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71 +V N + +++ ++ Y+ YA+S I RA+PD+RDG KPVHRRI++AMS++G+ + + Sbjct: 1 MVIGNTRPINIEDEMKNSYMDYAMSVIVSRALPDVRDGLKPVHRRILYAMSDLGMHYNTS 60 Query: 72 FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131 +KKSARIVGEV+GK HPHGD SVYD++VR+AQ F RY L+ GQGNFG++DGD AA RY Sbjct: 61 YKKSARIVGEVLGKYHPHGDSSVYDAMVRMAQNFSLRYMLVDGQGNFGSVDGDPPAAMRY 120 Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191 TEAR+T++A +L +D+D V+F +++ EP V PS+ P LL NG SGIAVGMAT+I Sbjct: 121 TEARLTRLAGELLVDIDKDTVEFMPNFDDSLKEPTVLPSRLPVLLMNGASGIAVGMATNI 180 Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251 P HN+ E+C+A LIDNPE +E L++++ GPDFPTGG+I+ R+ I +Y G G Sbjct: 181 PPHNLTELCDAISYLIDNPECGLEDLMQFVKGPDFPTGGLIL-GRDGIKSAYATGHGKVV 239 Query: 252 VRARWCVEEVGR--GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309 VRAR V +V I+++E+PYQV K+ L+++IA L ++I + ++RDES Sbjct: 240 VRARAHVADVAETGARRQIIISELPYQVNKADLVKRIAMLSRERKINGIAEVRDESDRQG 299 Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369 V+ R +P ++ +++ ++++T F +NM L R P V+ L L ++A R+ Sbjct: 300 LRVVIELKRDGEPQQILNNLYKHTNLQTSFFVNMLALVNNR-PVVLNLKEALNHYVAFRQ 358 Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTEN 426 E++ RRS F ++A R IL+GL IA N+D II +IR N D + ++SRF L++ Sbjct: 359 EIITRRSKFELKAARARAHILEGLKIALDNLDAIINLIRHAENADTARRELMSRFELSQL 418 Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486 Q AIL+L+LR L LE +I E ++L + ++ LL + ++ + + ++ EVK + Sbjct: 419 QAQAILDLQLRRLANLERQKILGEYADILKQISYLEDLLANPRKVLSLVKDDLAEVKARY 478 Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL------ 540 + RRT S+ ++ +I + + V ++ RG+I+ + + L Sbjct: 479 GDA-----RRTEIQ--SQGVIEFREEDLIPHQSMVVTLTERGFIKRVPTEVYRLQHRAGR 531 Query: 541 --SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL---LSGRGHGEAIQLLID 595 S + +E DS++ + A T D +LL + GK +++ + L G AI L+ Sbjct: 532 GKSIIKTREADSVRFIMVADTHDSVLLFTNRGKIFSIKCHEIPCDLLRTAKGIAIINLVP 591 Query: 596 LNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV-SSEEKMK 651 L N+ I + +D L++ +S G + S+ A G + + ++E + Sbjct: 592 LAENERITSMIAVSRFDEETSLIMATSGGECKRTKLSDFAAVRSSGLLAMDLPKNDELIG 651 Query: 652 LVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGKG 686 V+ +++ ++ N + + F + + R G Sbjct: 652 AVIAGADENIILITHNGRSIHFPVADLRVSQRASG 686 >gi|121997372|ref|YP_001002159.1| DNA gyrase subunit A [Halorhodospira halophila SL1] gi|121588777|gb|ABM61357.1| DNA gyrase subunit A [Halorhodospira halophila SL1] Length = 856 Score = 423 bits (1087), Expect = e-116, Method: Compositional matrix adjust. Identities = 247/626 (39%), Positives = 370/626 (59%), Gaps = 66/626 (10%) Query: 11 TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70 T V + V+L + + YL YA+S I RA+PD+RDG KPVHRR+++AM E+G D+ Sbjct: 2 TGVAREILPVNLEDEMRQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMRELGNDYNK 61 Query: 71 AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130 +KKSAR+VG+VIGK HPHGD +VYD++VRLAQ F RY L+ GQGNFG+IDGDS AA R Sbjct: 62 PYKKSARVVGDVIGKYHPHGDAAVYDTIVRLAQSFSMRYRLVDGQGNFGSIDGDSPAAMR 121 Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190 YTE RM ++A +L +D++ VDF D Y+ + EP V P++ PNLL NG SGIAVGMAT+ Sbjct: 122 YTEVRMARLAHELLADIDKETVDFVDNYDGSEQEPHVLPTRLPNLLVNGGSGIAVGMATN 181 Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250 IP HN++E+ +A +AL+D+PE+ +E L+EY+ PD PTGGII + I +++R GRG Sbjct: 182 IPPHNLREVIDACVALVDDPELPVESLIEYVPAPDLPTGGIIFGT-AGIHQAFRTGRGRM 240 Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDV 309 +RAR VEE+ IVVTE+PYQV K+RL+EKIAEL+ +R+ + ++RDES E + Sbjct: 241 VLRARAEVEEMTADRERIVVTELPYQVNKARLVEKIAELVKERRLEGISELRDESDKEGI 300 Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369 RIVL K R ++++ +++ + M+T F +N+ L G+ P+ + L +L+ ++ HRR Sbjct: 301 RIVLELK-RGEAGEIVLNNLYRHTQMQTVFGINVVALHEGQ-PRTLNLRQVLEAFIRHRR 358 Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR------ 420 EV+ RR+ + ++ R +L+GL +A NIDE+IA+I+ P K +V+R Sbjct: 359 EVVTRRTIYELRKARERAHVLEGLAVALANIDEVIALIKGSSGPAEAKAELVAREWRPGV 418 Query: 421 ------------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSE 450 + L+E Q AIL+LRL L +E+ +I E Sbjct: 419 VTEMLERAGAAATRPEDLADHFGLDADSGIYRLSEAQAQAILDLRLHRLTAMEQDKIVEE 478 Query: 451 LDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATL 510 NLL ++ +L+SG++ I E+ +++ + R+T R D A L Sbjct: 479 YSNLLERIAELIHILDSGERLMEVIREELVAIRDQYGDE-----RKTEI----REDTAEL 529 Query: 511 Q-QAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTD 561 + +I +E + V +S+ G++ R+ + SA K+ D + A+T D Sbjct: 530 SLEDLISEEDMVVTLSHHGYVKAQPLDGYRAQRRGGRGKSATAMKDEDFIDKLFIANTHD 589 Query: 562 RILLLSTDGKA-----YTLPAGNLLS 582 +L S+ GK Y LP G+ S Sbjct: 590 TLLCFSSTGKCYWRKVYELPQGSRTS 615 >gi|225677216|ref|ZP_03788209.1| DNA gyrase subunit A [Wolbachia endosymbiont of Muscidifurax uniraptor] gi|225590740|gb|EEH11974.1| DNA gyrase subunit A [Wolbachia endosymbiont of Muscidifurax uniraptor] Length = 900 Score = 423 bits (1087), Expect = e-116, Method: Compositional matrix adjust. Identities = 228/554 (41%), Positives = 345/554 (62%), Gaps = 40/554 (7%) Query: 13 VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72 +++N+ +S+ LE+ YL+YA+S I RAIPD+RDGFKPVHRRI++AMS G D G + Sbjct: 1 MQDNIVPISIVKELEDSYLSYAMSVIISRAIPDVRDGFKPVHRRILYAMSRAGFDAGKPY 60 Query: 73 KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132 KK+ARIVG+V+GK HPHGD ++YDSLVR+AQ F PLI GQGNFG+IDGD A+ RYT Sbjct: 61 KKAARIVGDVMGKYHPHGDAAIYDSLVRMAQDFSLLLPLIDGQGNFGSIDGDPPASMRYT 120 Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192 EAR+ +V+ +L +DED V+FR Y+ ++EPVV P++FPNLL NG SG+AVGMAT+IP Sbjct: 121 EARLQKVSHFLLNDIDEDTVNFRPNYDGNETEPVVLPAEFPNLLVNGASGVAVGMATNIP 180 Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252 SHN+ EI +A + +DNPE+++++LLE + GPDFPTGG I+ R I ++ GRG V Sbjct: 181 SHNLGEIIDACMLYVDNPEVTLDELLEVMPGPDFPTGGTIL-GRSGIRSAFATGRGSIVV 239 Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312 + + +E++ + IV+ EIPYQV K +LIEKI EL+ KRI + +IRDES + V Sbjct: 240 QGKTHIEDLPQDRQAIVIDEIPYQVNKVKLIEKIGELVKEKRIDGITEIRDESDKSGIRV 299 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 + R+ + ++ + L+ + + F +N VL+ R P +M L I+ ++ R+EVL Sbjct: 300 VIDLRRNAEASFILNQVLGLTPLRSSFSVNTLVLNNNR-PALMSLKEIIAAFVDFRKEVL 358 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---------------- 416 RR+ FR++ + I GL IA L+IDE+I IIR P Sbjct: 359 IRRTEFRLRKTREKAHIYIGLYIAVLSIDEVIKIIRGAKDPAEASRELLNKEWKTSNEIN 418 Query: 417 ----MVSR---------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDS 463 ++S + LTE Q+ AIL+++L+ L LE+ ++++EL +++ ++ + Sbjct: 419 TIIELISDSSSFLKDGVYRLTELQIKAILDMKLQRLTGLEKDKLEAELSSMINLIKEYIA 478 Query: 464 LLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVV 523 L SG++ +I ++E+K F+ R T E S AD + +I +E + + Sbjct: 479 FLGSGEKLMKEIKNNLQEIKNRFAVP------RKTSIEESDADIEA--EDLIPQEDMVIT 530 Query: 524 ISNRGWIRSLK-SH 536 ++ G+I+ +K SH Sbjct: 531 VTMNGYIKRVKLSH 544 >gi|284009348|emb|CBA76530.1| DNA gyrase subunit A [Arsenophonus nasoniae] Length = 881 Score = 423 bits (1087), Expect = e-116, Method: Compositional matrix adjust. Identities = 261/645 (40%), Positives = 376/645 (58%), Gaps = 60/645 (9%) Query: 7 SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66 S S + + + V++ L+ YL YA+S I RA+PD+RDG KPVHRR+++AM+ +G Sbjct: 4 SGSMSDIAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGN 63 Query: 67 DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126 D+ A+KKSAR+VG+VIGK HPHGD +VYD++VRLAQPF RY L+ GQGNFG++DGDSA Sbjct: 64 DWNKAYKKSARVVGDVIGKYHPHGDSAVYDAIVRLAQPFSMRYMLVDGQGNFGSVDGDSA 123 Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186 AA RYTE RM ++A +L +D++ VDF Y+ + P V P++ PNLL NG+SGIAVG Sbjct: 124 AAMRYTEVRMAKIAHELLADLDKETVDFIPNYDGTEQIPDVMPTRIPNLLVNGSSGIAVG 183 Query: 187 MATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLG 246 MAT+IP HN+ E+ + LA ID+ ISIE LLEYI GPDFPT II R I+++YR G Sbjct: 184 MATNIPPHNLSEVIDGCLAYIDDENISIEGLLEYIPGPDFPTAAII-NGRRGIIDAYRTG 242 Query: 247 RGGFRVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305 RG +RAR +E + G I+V EIPYQV K+RLIEKIAEL+ KR+ + +RDES Sbjct: 243 RGKVYIRARANIEVDDKNGRETIIVNEIPYQVNKARLIEKIAELVKDKRVEGISALRDES 302 Query: 306 AED-VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364 +D +RIV+ K R ++++ +++ L+ ++ F +NM L G+ P+++ L IL+ + Sbjct: 303 DKDGMRIVIEVK-RDAVAEVVLNNLYSLTQLQVSFGINMVALYDGQ-PRLLNLKEILEAF 360 Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR- 420 + HRREV+ RR+ F ++ R IL+ L +A NID II +IR P K +++R Sbjct: 361 VRHRREVVTRRTIFELRKARERAHILEALAVALANIDPIIELIRQASTPNEAKLALIARP 420 Query: 421 ---------------------------------FSLTENQVDAILNLRLRSLRKLEEYQI 447 + LTE Q AIL+LRL+ L LE +I Sbjct: 421 WQLGNVSAMLASAGDNAARPEWLEPQYGVREGQYYLTEPQAQAILDLRLQKLTSLEHDKI 480 Query: 448 KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADK 507 E LL + + +L S ++ I E+ VKE + RRT E S AD Sbjct: 481 LDEYRELLKQIAALLYILTSPERLMEVIREELEAVKEQYRDV-----RRTEITENS-ADI 534 Query: 508 ATLQQAMIEKEPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHT 559 + +I +E + V +S++G+++ + + SA KE D ++ L A+T Sbjct: 535 NI--EDLINQEDVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIERLLVANT 592 Query: 560 TDRILLLSTDGKAYTLPAGNLL-SGRG-HGEAIQLLIDLNHNQDI 602 D IL S+ G+ Y + L + RG G I L+ L N+ I Sbjct: 593 HDTILCFSSRGRLYWMKVYQLPEASRGARGRPIVNLLPLEQNERI 637 >gi|50120140|ref|YP_049307.1| DNA gyrase subunit A [Pectobacterium atrosepticum SCRI1043] gi|49610666|emb|CAG74111.1| DNA gyrase subunit A [Pectobacterium atrosepticum SCRI1043] Length = 879 Score = 423 bits (1087), Expect = e-116, Method: Compositional matrix adjust. Identities = 257/636 (40%), Positives = 371/636 (58%), Gaps = 62/636 (9%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + V++ L+ YL YA+S I RA+PD+RDG KPVHRR+++AMS +G D+ +KKSA Sbjct: 8 ITPVTIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSVLGNDWNKPYKKSA 67 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD +VY+++VR+AQPF RY L+ GQGNFG+IDGDSAAA RYTE RM Sbjct: 68 RVVGDVIGKYHPHGDSAVYETIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRM 127 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 +++A +L ++++ VDF Y+ + P V P++ PNLL NG+SGIAVGMAT+IP HN+ Sbjct: 128 SRIAHELLADLEKETVDFVPNYDGTEQIPDVMPTRVPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ LA ID+ IS+E L+E+I GPDFPT II R I E+YR GRG +RAR Sbjct: 188 TEVVNGCLAYIDDENISLEGLMEHITGPDFPTAAII-NGRRGIEEAYRTGRGKIYIRARA 246 Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314 VE + G I+V EIPYQV K+RLIEKIAEL+ KRI + +RDES +D +RIV+ Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRIEGISALRDESDKDGMRIVIE 306 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K ++ ++++ +++ + ++T F +NM L G+ P++MPL IL ++ HRREV+ R Sbjct: 307 IKRDAVG-EVVLNNLYSQTQLQTSFGINMVALHQGQ-PKIMPLKDILVAFVRHRREVVTR 364 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS--------------- 419 R+ F ++ R IL+GL IA NID II +IR P S Sbjct: 365 RTIFELRKARDRAHILEGLAIALANIDPIIELIRRAASPAEAKASLIAQAWELGTVATML 424 Query: 420 ----------------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457 + LTE Q AIL+LRL+ L +E ++ E +LLAE Sbjct: 425 ERAGDDAARPEWLEPEFGIREGHYYLTEQQAQAILDLRLQKLTGMEHEKLLDEYKDLLAE 484 Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ-QAMIE 516 ++ +LNS ++ I E+ +K +S RRT A+ A + + +I Sbjct: 485 IAELLYILNSPERLMEVIREELEAIKTQYSDG-----RRTEIT----ANTADINIEDLIN 535 Query: 517 KEPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568 +E + V +S++G+++ + + SA KE D + L A+T D IL S+ Sbjct: 536 QEDVVVTLSHQGYVKYQPLSDYEAQRRGGRGKSAARIKEEDFIDRLLVANTHDTILCFSS 595 Query: 569 DGKAYTLPAGNLL-SGRG-HGEAIQLLIDLNHNQDI 602 G+ Y + L + RG G I L+ L N+ I Sbjct: 596 RGRLYWMKVYQLPEASRGARGRPIVNLLPLEPNERI 631 >gi|134297888|ref|YP_001111384.1| DNA gyrase subunit A [Desulfotomaculum reducens MI-1] gi|134050588|gb|ABO48559.1| DNA gyrase subunit A [Desulfotomaculum reducens MI-1] Length = 818 Score = 423 bits (1087), Expect = e-116, Method: Compositional matrix adjust. Identities = 244/646 (37%), Positives = 388/646 (60%), Gaps = 31/646 (4%) Query: 26 LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85 ++ YL YA+S I RA+PD+RDG KPVHRRI++++ E+GL +++KSA IVG+V+ Sbjct: 17 MKNSYLDYAMSVIVGRALPDVRDGLKPVHRRILYSLHELGLTPDKSYRKSAGIVGKVMQD 76 Query: 86 LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145 HPHGD ++YD++VRLAQ F RYPLI G GNFG+IDGD AA RYTEARM ++ +L Sbjct: 77 FHPHGDSAIYDAMVRLAQDFASRYPLIQGHGNFGSIDGDPPAAMRYTEARMAKITLEMLA 136 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 +D++ VDF Y+ EP + PSK PNLL NG+SGIAVGMAT+IP HN+ E+ + L Sbjct: 137 DIDKETVDFAPNYDNRTEEPTILPSKIPNLLVNGSSGIAVGMATNIPPHNMGEVIDGVLM 196 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265 +I +P ++ + L++ I GPDFPTG I+ ++ I ++YR GRG ++RA+ +E G Sbjct: 197 MIKDPNVTPDDLMKVIKGPDFPTGATIM-GKDGIRQAYRTGRGSVKMRAQTTIETKANGR 255 Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFPKNRSLDPDL 324 I+V EIPYQV K++LIEKIAEL+ K+I + D+RDES +RIV+ K S +P++ Sbjct: 256 PVIIVNEIPYQVNKAKLIEKIAELVKDKKIEGISDLRDESDRRGMRIVIELKKDS-NPNV 314 Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384 ++ ++ + M+ F + M L + P+V+ L ++ +L H+++V+ RR+ + ++ + Sbjct: 315 ILNLLYKHTQMQESFGIIMLAL-VNNEPKVLNLAQVIFHYLEHQKDVITRRTRYELKKAE 373 Query: 385 RRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAILNLRLRSLRK 441 R I++GL IA N+DE+I IR N ++ + +V +F+LTE Q +AI+ +RLRSL Sbjct: 374 ARAHIVEGLRIALANLDEVIKTIRESKNTEEARRGLVDKFNLTEIQAEAIVEMRLRSLTA 433 Query: 442 LEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCE 501 LE +++ E LL + + + S+L ++ N I E+ VKE F+ + RRT Sbjct: 434 LEVEKLEKEYKELLEKIDYLRSILADEQKVLNIIRDELLVVKEKFADA-----RRTLISN 488 Query: 502 VSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKI 553 V+ D + +I++E + V I+N+G+I RS K ++A+ KE D ++ Sbjct: 489 VAAGDFDI--EDLIDEEDMVVTITNQGYIKRISMDTYRSQKRGGKGITAMGTKEEDFVRD 546 Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAFV---Y 608 A T +L + GK Y L + S G I L+ + ++ + T + Sbjct: 547 LFIASTHHFLLFFTNKGKVYRLKVYEVPEASRTAKGTPIINLLSFDSDEYVTTVIPIKEF 606 Query: 609 DSTCKLLVVSSKGNAFIVEESEIIA-NTRKGKTFLKVSSEEKMKLV 653 + T L + + G IV+++ + N+ + + ++ +EK KLV Sbjct: 607 EETAYLFMATKHG---IVKKTALTEYNSSRRDGLIAINLDEKDKLV 649 >gi|126668593|ref|ZP_01739546.1| DNA gyrase, A subunit [Marinobacter sp. ELB17] gi|126626923|gb|EAZ97567.1| DNA gyrase, A subunit [Marinobacter sp. ELB17] Length = 895 Score = 423 bits (1087), Expect = e-116, Method: Compositional matrix adjust. Identities = 246/603 (40%), Positives = 362/603 (60%), Gaps = 58/603 (9%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 V++ L++ YL YA+S I RA+PD+RDG KPVHRR++ AMS + D+ A+KKSAR+V Sbjct: 11 VNIEDELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSVLNNDWNKAYKKSARVV 70 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGD +VYD++VR+AQPF RYPL+ GQGNFG+IDGD+AAA RYTE RM ++ Sbjct: 71 GDVIGKYHPHGDSAVYDTIVRMAQPFSLRYPLVDGQGNFGSIDGDNAAAMRYTEIRMKKI 130 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A +L +D++ VDF Y+ + PVV P++ PNLL NG+SGIAVGMAT+IP HN+ E+ Sbjct: 131 AHSLLADLDKETVDFVPNYDGTEQIPVVMPTRVPNLLVNGSSGIAVGMATNIPPHNLTEV 190 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 + LALID+P++SI++L+E+I GPDFPT GII R IVE+YR GRG +RAR VE Sbjct: 191 VKGCLALIDDPDLSIDQLMEFIPGPDFPTEGII-NGRAGIVEAYRTGRGRVYIRARHEVE 249 Query: 260 EVGRGSW-CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFPKN 317 + +++TE+PYQ+ KSRLIEKIAEL+ KR+ + ++RDES E +R+V+ + Sbjct: 250 HDAKTKRDAVIITELPYQLNKSRLIEKIAELVKEKRLEGITELRDESNKEGIRVVIELR- 308 Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377 R +PD+++ ++F + +ET F +NM L G P+++ L +L ++ HRREV+ RR+ Sbjct: 309 RGENPDVIINNLFKQTQLETVFGINMVALIDGE-PRILNLKEMLDAFIRHRREVVTRRTI 367 Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIR----------------------------- 408 F ++ R IL+GL +A NIDEIIA+I+ Sbjct: 368 FELRKARERGHILEGLAVALANIDEIIALIKASPSAAEAKEKLIAQGWGSEDVMAMLERA 427 Query: 409 NEDKPKP--------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEK 460 ED +P + ++ L+ Q AIL+LRL L LE ++++E +L Sbjct: 428 GEDACRPDDLPEIYGLRNGKYHLSPEQAQAILDLRLHRLTGLETEKLQNEYREILERIAD 487 Query: 461 IDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI 520 + +L + ++ I E++ + E F G R T SR D +I++E + Sbjct: 488 LLDILGNPERLMQVIRDELQAIVEEF------GDERRTEITSSRRDLTVAD--LIDEEEL 539 Query: 521 TVVISNRGWIRSLKSHSVDL--------SALHFKEGDSLKIALHAHTTDRILLLSTDGKA 572 V IS+ G+ ++ +A K+ D ++ L A++ D IL S GK Sbjct: 540 VVTISHSGYAKTQAVEDYQAQRRGGRGKAATSMKDEDFVEKLLVANSHDTILCFSNRGKV 599 Query: 573 YTL 575 Y L Sbjct: 600 YWL 602 >gi|193216894|ref|YP_002000136.1| DNA gyrase subunit A [Mycoplasma arthritidis 158L3-1] gi|193002217|gb|ACF07432.1| DNA gyrase subunit A [Mycoplasma arthritidis 158L3-1] Length = 898 Score = 423 bits (1087), Expect = e-116, Method: Compositional matrix adjust. Identities = 249/697 (35%), Positives = 408/697 (58%), Gaps = 35/697 (5%) Query: 14 EEN-VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72 E+N ++ L ++ ++ YA+S I RA+PD RDG KPVHRRI++ MSE+G+ A Sbjct: 67 EQNGLQPADLAKVMKSSFIEYAMSVIVSRALPDARDGLKPVHRRILYGMSELGMFHTAPH 126 Query: 73 KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132 KKSARIVG+V+GK HPHGD SVY+++VR+AQ F RYPLI G GNFG+IDGD AAA RYT Sbjct: 127 KKSARIVGDVLGKYHPHGDSSVYEAMVRMAQDFSLRYPLIDGHGNFGSIDGDEAAAMRYT 186 Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192 EARM+++A +++ G+ ++ VDF D Y+ + EP V PS+FPNLL +GTSGIAVGMAT+IP Sbjct: 187 EARMSKIAGVMVDGIKKNTVDFIDNYDGTEKEPTVLPSRFPNLLVSGTSGIAVGMATNIP 246 Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252 HN+ EI +A AL NPEI+I+ L+E+++ PDFPTG I ++ ++E+Y+ GRG + Sbjct: 247 PHNLGEIIDAVCALAKNPEITIDGLMEFVLAPDFPTGATIF-NKAGLIEAYKTGRGSITM 305 Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRI 311 RA+ ++E+ G I++TEIPY+V+K+ ++EKIA+ + KRI + D RDES D +R+ Sbjct: 306 RAKANIQELANGKSKIIITEIPYEVKKTEIMEKIADHLKNKRIEGISDFRDESNRDGIRV 365 Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371 V+ K ++ P++++ +++ L+ ++T F NM L G P+++ L L+ +L H+ +V Sbjct: 366 VIDVKKNAV-PEVILNTLYKLTRLQTNFSFNMIALVNGE-PKLLNLKECLQVYLDHQIDV 423 Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQV 428 RR F ++ R IL+GL I NID +I II+ + + FSL+E Q Sbjct: 424 TRRRLQFDLEKDLARAHILEGLKICVENIDRVIEIIKKSKTDVDAQAKLCQTFSLSEIQA 483 Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488 AI+++RL L L ++ ELD + A + ++L+S ++ I E++EVKE + Sbjct: 484 KAIVDMRLGRLTGLAIEKMNDELDQVNARIAEYRAILSSHEKLIELIIKELQEVKEAYGD 543 Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDL 540 R ++ D +I ++ I + +S+ +I R + V + Sbjct: 544 KRRSEIRWDVMSSINNED-------LIPQKEIVITLSSNNYIKRIDLEEYREQRRGGVGV 596 Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEA---IQLLIDLN 597 S + + D ++ + A+T +L+ + + K Y + + SG + + ++ + Sbjct: 597 STVKTYQDDDIQDVVVANTHADLLIFTDEAKIYRVRGHEIPSGTKQSKGTPIVNIVPTIQ 656 Query: 598 HNQDIVTAFV---YDSTCKLLVVSSKG--NAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652 N+ +V Y+ + L+ V+ +G ++E E+I + GK L + ++ + Sbjct: 657 KNEKVVKIICVTDYEESQSLITVTERGVIKKTNLKEYELI--RKNGKYALSLLEDDHLID 714 Query: 653 VVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGV 687 V V D + + N ++ F++ + EM R +GV Sbjct: 715 VRVVDQDEEIFIAASNSRINRFNVADVREMGRVARGV 751 >gi|304379954|ref|ZP_07362683.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|304341534|gb|EFM07444.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Staphylococcus aureus subsp. aureus ATCC BAA-39] Length = 886 Score = 423 bits (1087), Expect = e-116, Method: Compositional matrix adjust. Identities = 252/670 (37%), Positives = 400/670 (59%), Gaps = 37/670 (5%) Query: 26 LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85 + E +L YA+S I RA+PD+RDG KPVHRRI++ ++E G+ ++KKSARIVG+V+GK Sbjct: 18 MRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDKSYKKSARIVGDVMGK 77 Query: 86 LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145 HPHGD S+Y+++VR+AQ F RYPL+ GQGNFG++DGD AAA RYTEARMT++ +L+ Sbjct: 78 YHPHGDASIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEARMTKITLELLR 137 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 +++D +DF D Y+ + EP V P++FPNLLANG SGIAVGMAT+IP HN+ E+ L+ Sbjct: 138 DINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATNIPPHNLTELINGVLS 197 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265 L NP+ISI +L+E I GPDFPT G+I+ + I +Y GRG ++R+R +EE G G Sbjct: 198 LSKNPDISIAELMEDIEGPDFPTAGLIL-GKSGIRRAYETGRGSIQMRSRAVIEERGGGR 256 Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA--EDVRIVLFPKNRSLDPD 323 IVVTEIP+QV K+R+IEKIAEL+ K+I + D+RDE++ VR+V+ + + + Sbjct: 257 QRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRVVIDVR-KDANAS 315 Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383 +++ +++ + ++T F +NM L GR P+++ L L +L H++ V+ RR+ + ++ Sbjct: 316 VILNNLYKQTPLQTSFGVNMIALVNGR-PKLINLKEALVHYLEHQKTVVRRRTQYNLRKA 374 Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVDAILNLRLRSLR 440 R IL+GL IA +IDEII+ IR + K M S RF L+E Q AIL++RLR L Sbjct: 375 KDRAHILEGLRIALDHIDEIISTIRESETDKVAMESLQQRFKLSEKQAQAILDMRLRRLT 434 Query: 441 KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500 LE +I++E + LL +++++L + + E+ E+++ F RRT Sbjct: 435 GLERDKIEAEYNELLNYISELEAILADEEVLLQLVRDELTEIRDRFGDD-----RRT--- 486 Query: 501 EVSRADKATLQ-QAMIEKEPITVVISNRGWIRSLKSHSV--------DLSALHFKEGDSL 551 E+ L+ + +I +E I + +S+ +I+ L + + ++ E D + Sbjct: 487 EIQLGGFEDLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRAQNRGGRGVQGMNTLEEDFV 546 Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAFV-- 607 + T D +L + G+ Y L + LS + G + I+L +++ I T Sbjct: 547 SQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIELENDEIISTMIAVK 606 Query: 608 -YDSTCKLLVVSSKGNAFIVEESEIIAN----TRKGKTFLKVSSEEKMKLVVKVTGDHVA 662 +S LV ++K +V+ S ++N R GK + ++++ V +G Sbjct: 607 DLESEDNFLVFATKRG--VVKRS-ALSNFSRINRNGKIAISFREDDELIAVRLTSGQEDI 663 Query: 663 VVGENRKLLI 672 ++G + LI Sbjct: 664 LIGTSHASLI 673 >gi|114565582|ref|YP_752736.1| DNA gyrase subunit A [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114336517|gb|ABI67365.1| DNA gyrase subunit A [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 812 Score = 422 bits (1086), Expect = e-116, Method: Compositional matrix adjust. Identities = 251/690 (36%), Positives = 414/690 (60%), Gaps = 36/690 (5%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 E V + + +++ +L Y++S I RA+PD+RDG KPVHRRI++A+ E G+ KK Sbjct: 8 EKVIPIDIEKEVKKSFLEYSMSVIVSRALPDVRDGLKPVHRRILYALHEQGMTHDKPHKK 67 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 SA IVGEV+GK HPHGD ++Y ++V+LAQ F RYPL+ G GNFG+IDGD+AAA RYTE+ Sbjct: 68 SANIVGEVMGKYHPHGDAAIYQTMVKLAQEFAMRYPLVDGHGNFGSIDGDAAAAMRYTES 127 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 RM+++A +L+ +D+D VD+R Y+E EP V P++ PNLL NG++GIAVGMAT+IP H Sbjct: 128 RMSRIAAELLKDIDKDTVDWRPNYDESREEPQVLPARIPNLLLNGSAGIAVGMATNIPPH 187 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 N++EI + IDNP+I+IE+L++ I GPDFPTGGI+ E+R I ++Y GRG R RA Sbjct: 188 NLREIVKGIKEYIDNPDITIEELMQSIPGPDFPTGGIL-EAR-GIRQAYETGRGTIRTRA 245 Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVL 313 R+ +EE G + IVVTEIPYQV K+RL+EKIAEL+ K++ + D+RDES + +RIV+ Sbjct: 246 RYEIEEKKGGKFSIVVTEIPYQVNKARLVEKIAELVRDKKVEGIVDLRDESDRKGIRIVI 305 Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373 + + ++ ++++ +F + ME F + M L G P+++ L +++ ++ HR+EV+ Sbjct: 306 ELR-KDVNVNVILNKLFRHTQMEDSFGIIMLSLVNGE-PRILNLKEMIQYYVEHRQEVIN 363 Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLTENQVDA 430 RR+++ + R IL+GL IA N+DEII +IRN + + + SRF+L+E Q +A Sbjct: 364 RRTTYELNLAKNRKHILEGLKIALDNLDEIINLIRNSRDRENARGELQSRFNLSEIQANA 423 Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490 IL++RL L LE ++++E + +L + +L ++ + I ++ ++++ + + Sbjct: 424 ILDMRLVQLTGLERSKVENEYEEVLLRIADYEDILARPERVLSMIKEDLDDIEKRYGDN- 482 Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSA 542 RRT + + ++ I+ + + +SNRG++ RS K +SA Sbjct: 483 ----RRTEISQEE---SSYEEEDFIDDHEVVITLSNRGYVKRQPLDTYRSQKRGGKGVSA 535 Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL--IDLNHNQ 600 + D L +L + G+ +T A + + + L+ ++L + Sbjct: 536 TTIRAEDFAHDVLVTSALATLLFFTNQGRVFTTRAFQIPESSRQAKGMPLVNFLELRPGE 595 Query: 601 DIVT---AFVYDSTCKLLVVSSKGNAFIVEESEIIA--NTRK-GKTFLKVSSEEKMKLVV 654 + T A ++ LL+V+ KG I++++ + A N RK G + + ++++ V+ Sbjct: 596 KVTTIVGAREFNREHHLLMVTKKG---IIKKTALKAFQNVRKSGLIAVNLREDDELVGVI 652 Query: 655 KV-TGDHVAVVGENRKLLIFSIDQIPEMSR 683 +V TG V + ++F Q+ M R Sbjct: 653 RVKTGSKVMIANSRGISIMFDEKQVRSMGR 682 >gi|258510026|ref|YP_003183460.1| DNA gyrase, A subunit [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257476752|gb|ACV57071.1| DNA gyrase, A subunit [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 820 Score = 422 bits (1086), Expect = e-116, Method: Compositional matrix adjust. Identities = 236/574 (41%), Positives = 355/574 (61%), Gaps = 31/574 (5%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 V + L +L YA+S I RAIPD+RDG KPVHRRI++AM E G+ +KKS+RIV Sbjct: 13 VDISQELRNSFLDYAMSVIVARAIPDVRDGLKPVHRRILYAMYEAGMTPDKPYKKSSRIV 72 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+V+GK HPHGD +VY++LVRLAQ F RYPLI G GNFG+IDGD+AAA RYTE+RM+ + Sbjct: 73 GDVLGKFHPHGDAAVYEALVRLAQDFSTRYPLIDGHGNFGSIDGDAAAAMRYTESRMSAI 132 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A +L+ ++++ VDF Y+E++ EPVV PS+FPNLL NG+SGIAVGMAT+IP HN++E+ Sbjct: 133 ALELLRDINKETVDFIPNYDEQEEEPVVLPSRFPNLLVNGSSGIAVGMATNIPPHNLREV 192 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 + + LID+P+ +++ L+ I GPDFPTGG+I+ RE I ++Y GRG VRA E Sbjct: 193 IDGVVMLIDHPDATLDDLMTVIKGPDFPTGGVIL-GREGIRKAYETGRGSITVRAVTHFE 251 Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319 E+ G IVVTEIPYQ K+R++EKIAEL K+I + D+RDES V+ R Sbjct: 252 ELSGGKTRIVVTEIPYQQNKARIVEKIAELAREKKIDGITDLRDESDRRGMRVVIELRRD 311 Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379 + P +++ ++F + ++T F + +N+ + P+V+ L L+ +L H+R+V+ RR+ + Sbjct: 312 VRPQVVLNNLFKHTALQTSFGV-INLALVNGEPKVLTLRETLEHYLNHQRDVVRRRTQYD 370 Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAILNLRL 436 + + R IL+GL IA ++DE+I++IR+ D+ + ++S F L+E Q AIL++RL Sbjct: 371 LAKAEARAHILEGLRIALDHLDEVISLIRSSRTVDEARQGLISTFGLSEEQAQAILDMRL 430 Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496 + L LE +I++E L ++ ++L K I EI E+KE F RR Sbjct: 431 QRLTGLEREKIEAEYQELQQRIAELKAILADPKLLDGVIRQEILEIKERFGDE-----RR 485 Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF-KEGDSLKIAL 555 T + A+ ++ +I + + I++RG+I+ L LS H + G + Sbjct: 486 T---RIVNAEGEISEEDLIPVHDVVIAITHRGYIKRLP-----LSTYHSQRRGGRGMTLI 537 Query: 556 HAH------------TTDRILLLSTDGKAYTLPA 577 +AH T D +L + G+ Y + A Sbjct: 538 NAHEEDFVTGLHVTSTHDYLLFFTNRGRMYAIKA 571 >gi|158520690|ref|YP_001528560.1| DNA gyrase, A subunit [Desulfococcus oleovorans Hxd3] gi|158509516|gb|ABW66483.1| DNA gyrase, A subunit [Desulfococcus oleovorans Hxd3] Length = 830 Score = 422 bits (1086), Expect = e-116, Method: Compositional matrix adjust. Identities = 277/761 (36%), Positives = 428/761 (56%), Gaps = 48/761 (6%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 +S+ + + YL YA+S I RA+PD+RDG KPVHRRI+ AM E+ ++ +KKSAR+V Sbjct: 11 ISIEKEMRKSYLDYAMSVIIGRALPDVRDGLKPVHRRILFAMHELKNEWNKPYKKSARVV 70 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGD +VYD++VR+AQ F RY L+ GQGNFG++DGDS AA RYTE RM ++ Sbjct: 71 GDVIGKYHPHGDTAVYDAIVRMAQDFSMRYMLVDGQGNFGSVDGDSPAAMRYTEVRMQKL 130 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A L+L+ +D++ VD Y+E SEP+V PS+ P LL NG+SGIAVGMAT+IP HN+ E+ Sbjct: 131 AHLMLEDIDKETVDLGLNYDESLSEPLVLPSRLPTLLINGSSGIAVGMATNIPPHNLSEV 190 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 +A ALIDNP++S+E L++++ GPDFPT GII + I E Y GRG RVR R VE Sbjct: 191 ADAITALIDNPDMSVEALMQHVPGPDFPTCGII-HGTDGIAEGYATGRGKIRVRGRVFVE 249 Query: 260 EVGRGSW--CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFPK 316 + G+ IVV E+PYQV K+RLIEK+AEL+ K I + +RDES E +RI + K Sbjct: 250 K-GKDDHDETIVVDELPYQVNKARLIEKVAELVKDKVIDGIRYVRDESDKEGMRIAIGLK 308 Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376 R+ D+++ ++ + +E F +NM + R P+++ L IL+ ++ HR+E++ RR+ Sbjct: 309 -RNQFADVVINQLYKHTQLENTFGINMLAVVNNR-PELLTLKEILEYFILHRKEIIVRRT 366 Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVDAILN 433 F ++ + R IL+GL IA N+DE++A+IR P + ++ +F LT+ Q AIL+ Sbjct: 367 RFDLRKAEERAHILEGLKIALDNLDEVVALIRRSASPAEARTGLMEQFGLTQIQAQAILD 426 Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493 +RL+ L LE +I E L + + +L S + + I E+ ++K F Sbjct: 427 MRLQKLTGLEREKIIEEYKETLKQIAWFNEILGSERIVLDLIKKELADLKAEFGDE---- 482 Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHF 545 RRT ++ K L + MI +E + V +S G+I R + +A+ Sbjct: 483 -RRT---QIMGQKKEILLEDMIAREEMVVTVSRAGYIKRNPITLYRKQRRGGRGKTAMGT 538 Query: 546 KEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQ 600 +E D + A + D L + G K Y +P S G AI L++ N + Sbjct: 539 REDDFVDRLFVASSHDTFLFFTNRGRVFWRKVYEIPQAGRAS---RGTAIVNLLNFNEGE 595 Query: 601 DIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK---GKTFLKVSSEEKMKLVVKVT 657 D+ T L V +V++++I+ +R G L ++ +++ + V++T Sbjct: 596 DLATVLSVPEFSPGLFVLMATRKGMVKKTDIMDYSRPRSGGLIALGLADGDEL-IAVRIT 654 Query: 658 GDHVAVV-----GENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVICFKICEGLTW 711 V G++ + L + + ++RG KG+ L+ KD + + L Sbjct: 655 DGSWNVFLGSQNGKSVRFLESDVRPMGRLARGVKGMTLE--KDDHVVGMEVLSHGNTLMT 712 Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752 I G R+E D + +RGG G + K R+GK ++ Sbjct: 713 ITENGYG-KRTEIDEYP-VNRRGGKGVITIKTTKRNGKVVA 751 >gi|227328225|ref|ZP_03832249.1| DNA gyrase subunit A [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 879 Score = 422 bits (1086), Expect = e-116, Method: Compositional matrix adjust. Identities = 249/605 (41%), Positives = 358/605 (59%), Gaps = 60/605 (9%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + V++ L+ YL YA+S I RA+PD+RDG KPVHRR+++AMS +G D+ +KKSA Sbjct: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSVLGNDWNKPYKKSA 67 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD +VY+++VR+AQPF RY L+ GQGNFG+IDGDSAAA RYTE RM Sbjct: 68 RVVGDVIGKYHPHGDSAVYETIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRM 127 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 +++A +L ++++ VDF Y+ + P V P++ PNLL NG+SGIAVGMAT+IP HN+ Sbjct: 128 SKIAHELLADLEKETVDFVPNYDGTEQIPDVMPTRIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ LA ID+ IS+E L+E+I GPDFPT II R I E+YR GRG +RAR Sbjct: 188 TEVVNGCLAYIDDENISLEGLMEHIKGPDFPTAAII-NGRRGIEEAYRTGRGKIYIRARA 246 Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314 VE + G I+V EIPYQV K+RLIEKIAEL+ KRI + +RDES +D +RIV+ Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRIEGISALRDESDKDGMRIVIE 306 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K ++ ++++ +++ + ++T F +NM L G+ P++MPL IL ++ HRREV+ R Sbjct: 307 IKRDAVG-EVVLNNLYSQTQLQTSFGINMVALHQGQ-PKIMPLKDILVAFVRHRREVVTR 364 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS--------------- 419 R+ F ++ R IL+GL IA NID II +IR P S Sbjct: 365 RTIFELRKARDRAHILEGLAIALANIDPIIELIRRAASPAEAKASLIAQAWELGSVATML 424 Query: 420 ----------------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457 R+ LTE Q AIL+LRL+ L +E ++ E LLAE Sbjct: 425 ERAGDDAARPEWLEPEFGIRDGRYYLTEQQAQAILDLRLQKLTGMEHEKLLDEYKELLAE 484 Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ-QAMIE 516 ++ +LNS ++ I E+ +K +S RRT A+ A + + +I Sbjct: 485 IAELLYILNSPERLMEVIREELEAIKTQYSDE-----RRTEIT----ANTADINIEDLIN 535 Query: 517 KEPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568 +E + V +S++G+++ + + SA KE D + L A+T D IL S+ Sbjct: 536 QEDVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSS 595 Query: 569 DGKAY 573 G+ Y Sbjct: 596 RGRLY 600 >gi|323699692|ref|ZP_08111604.1| DNA gyrase, A subunit [Desulfovibrio sp. ND132] gi|323459624|gb|EGB15489.1| DNA gyrase, A subunit [Desulfovibrio desulfuricans ND132] Length = 815 Score = 422 bits (1086), Expect = e-116, Method: Compositional matrix adjust. Identities = 239/607 (39%), Positives = 371/607 (61%), Gaps = 33/607 (5%) Query: 19 AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78 +++ L++ YL Y+LS I RAIPD+RDG KPVHRRI++AM ++G + A+KKSAR+ Sbjct: 4 TITIESELKKSYLEYSLSVIIGRAIPDVRDGLKPVHRRILYAMHDLGNYYNRAYKKSARV 63 Query: 79 VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138 VG+VIGK HPHGD +VYD+LVRLAQ F R L+ GQGNFG+IDGDSAAA RYTE RM + Sbjct: 64 VGDVIGKYHPHGDSAVYDALVRLAQDFSMRDTLVDGQGNFGSIDGDSAAAMRYTEVRMAR 123 Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198 + L ++++ VDF Y+ EP V P+K PNLL NGT+GIAVGMAT+IP HN+ E Sbjct: 124 LCSEFLGDIEKNTVDFAPNYDNTLQEPTVLPTKVPNLLLNGTTGIAVGMATNIPPHNLGE 183 Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258 + + ++ L+DNPE +IE L++ I GPDFPTGG I + ++++Y GRG ++R + Sbjct: 184 LIDGSVHLLDNPECTIESLMKRIKGPDFPTGGTIFGG-QGLIDAYTTGRGSIKIRGVVEL 242 Query: 259 EEVGRG-SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFPK 316 EE +G I++ EIPY + KS L+EKIA L+ K+I + D+RDES + +RIVL K Sbjct: 243 EEARKGHKESIIIKEIPYALNKSTLVEKIAALVHEKKIDGVADLRDESDRKGIRIVLELK 302 Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376 R D+++ S++ + +ET F +NM + +G+ P ++ L +L +L HRREV+ RR+ Sbjct: 303 -RGAIADIIINSLYKFTPLETSFGINMMAV-VGKRPMLLNLKEVLGHFLEHRREVIIRRT 360 Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVDAILN 433 F + ++RV IL+GL IA NIDE++ +IR P+ ++SRFSL++ Q AIL+ Sbjct: 361 KFDLDKCEKRVHILEGLRIALDNIDEVVKLIRASKTPEEARDGLMSRFSLSDIQAKAILD 420 Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493 +RL+ L LE ++ EL L+ + E ++L++ + I E+ E+K ++ Sbjct: 421 MRLQKLTGLEHDKLLEELAELMKKIEYFKAILSNDEVLKGVIRDELNEIKTNYATP---- 476 Query: 494 RRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIR--------SLKSHSVDLSALH 544 R++ E+ RAD ++ + +I E + +S RG+I+ + K ++ + Sbjct: 477 -RKS---ELLRADLDSIDIEDLIPDEETVITLSRRGYIKRTPLSNYTAQKRGGKGIAGVQ 532 Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTL-----PAGNLLSGRGHGEAIQLLIDLNHN 599 +GD + + ++L + GK + + P G+ + GH + L+ L+ + Sbjct: 533 TGDGDFIHTFMLTTNHQHLVLFTNFGKMFKIKVHQVPEGSRYAKGGH---VNNLLPLDKD 589 Query: 600 QDIVTAF 606 + I T Sbjct: 590 EHIATCL 596 >gi|319783739|ref|YP_004143215.1| DNA gyrase subunit alpha [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317169627|gb|ADV13165.1| DNA gyrase, A subunit [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 933 Score = 422 bits (1086), Expect = e-116, Method: Compositional matrix adjust. Identities = 261/712 (36%), Positives = 389/712 (54%), Gaps = 63/712 (8%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 ++ +S+ ++ YL YA+S I RA+PD+RDG KPVHRRI+ A E G + + KSA Sbjct: 17 IEPISIVEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILFAAHESGYHWNRKYVKSA 76 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R V +V+GK HPHGD S+YD+LVR+AQ + R PLI GQGNFG+IDGD AA RYTEAR+ Sbjct: 77 RPVADVMGKYHPHGDASIYDALVRMAQDWSLRVPLIDGQGNFGSIDGDPPAAMRYTEARL 136 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 T+VA +L+ +D+D VDF+DTY+ SEP V P++FPNLL NG+ GIAVGMAT+IP HN+ Sbjct: 137 TKVAHELLEDIDKDTVDFQDTYDASGSEPKVLPARFPNLLVNGSGGIAVGMATNIPPHNL 196 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+C A+A+IDNP I + L+E I GPDFPTGGI++ R I +Y GRG +R R Sbjct: 197 GEVCNGAIAIIDNPAIDLPALMEIIPGPDFPTGGIVL-GRSGIYSAYSTGRGSIVMRGRV 255 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316 +E+ G I++TE+PYQV KS +IEK+AEL+ KRI + DIRDES V+ Sbjct: 256 NIEQRGNDRESIIITEVPYQVNKSSMIEKMAELVRDKRIEGISDIRDESDRQGYRVVIEL 315 Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376 R D+++ ++ + ++T F NM L+ G+ P+VM L +LK ++A R EV+ RR+ Sbjct: 316 KRDAVADVILNQLYRFTPLQTSFGANMVALNGGK-PEVMNLTDMLKAFVAFREEVITRRT 374 Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP----VMVSR------------ 420 F ++ R +L GL IA NIDE+I +IR P+ +M R Sbjct: 375 KFLLRKARDRAHVLVGLAIAVANIDEVIKLIRTAPDPQTAREQLMERRWPSGDVESLILL 434 Query: 421 -------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467 ++L+E Q AIL LRL+ L L +I EL+ + AE +L+S Sbjct: 435 IDDPRHRINEDGTYNLSEEQARAILELRLQRLTALGRDEIADELNTIGAEIIDYLDILSS 494 Query: 468 GKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNR 527 + + E+ V++ F RRT E++ + +I++E + V +S+ Sbjct: 495 RARVQQIVKDELAAVRDEFGTP-----RRT---ELTDGGSDMEDEDLIQREDMVVTVSHS 546 Query: 528 GWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYT 574 G+I R+ + S + KE D + A+T +L S+ G K + Sbjct: 547 GYIKRVPLSLYRAQRRGGKGRSGMSTKEEDFVTRLFVANTHTPVLFFSSRGIVYKEKVWR 606 Query: 575 LPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD------STCKLLVVSSKGNAFIVEE 628 LP GN S G+A+ ++ L + I T ++ +++G + Sbjct: 607 LPIGNPQS---RGKALINMLPLEQGERITTIMPLPEDEASWGELYVMFATTRGTVRRNDL 663 Query: 629 SEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH--VAVVGENRKLLIFSIDQI 678 S+ + R GK +K+ E L V+ D V + + + + FS+ + Sbjct: 664 SDFVQVNRNGKIAMKLEEEGDEILGVETCTDKDDVLLTASSGQCIRFSVGDV 715 >gi|227114440|ref|ZP_03828096.1| DNA gyrase subunit A [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 879 Score = 422 bits (1086), Expect = e-116, Method: Compositional matrix adjust. Identities = 258/638 (40%), Positives = 374/638 (58%), Gaps = 62/638 (9%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + V++ L+ YL YA+S I RA+PD+RDG KPVHRR+++AMS +G D+ +KKSA Sbjct: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSVLGNDWNKPYKKSA 67 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD +VY+++VR+AQPF RY L+ GQGNFG+IDGDSAAA RYTE RM Sbjct: 68 RVVGDVIGKYHPHGDSAVYETIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRM 127 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 +++A +L ++++ VDF Y+ + P V P++ PNLL NG+SGIAVGMAT+IP HN+ Sbjct: 128 SKIAHELLADLEKETVDFVPNYDGTEQIPDVMPTRIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ LA ID+ IS+E L+E+I GPDFPT II R I E+YR GRG +RAR Sbjct: 188 TEVVNGCLAYIDDENISLEGLMEHIKGPDFPTAAII-NGRRGIEEAYRTGRGKIYIRARA 246 Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314 VE + G I+V EIPYQV K+RLIEKIAEL+ KRI + +RDES +D +RIV+ Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRIEGISALRDESDKDGMRIVIE 306 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K ++ ++++ +++ + ++T F +NM L G+ P++MPL IL ++ HRREV+ R Sbjct: 307 IKRDAVG-EVVLNNLYSQTQLQTSFGINMVALHQGQ-PKIMPLKDILVAFVRHRREVVTR 364 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVS------------ 419 R+ F ++ R IL+GL IA NID II +IR P K +++ Sbjct: 365 RTIFELRKARDRAHILEGLAIALANIDPIIELIRRAPSPAEAKAALIAQAWELGSVAAML 424 Query: 420 ----------------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457 R+ LTE Q AIL+LRL+ L +E ++ E LLAE Sbjct: 425 ERAGDDAARPEWLEPEYGIRDGRYYLTEQQAQAILDLRLQKLTGMEHEKLLDEYKALLAE 484 Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ-QAMIE 516 ++ +LNS ++ I E+ +K +S RRT A+ A + + +I Sbjct: 485 IAELLYILNSPERLMEVIREELEAIKTQYSDE-----RRTEIT----ANTADINIEDLIN 535 Query: 517 KEPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568 +E + V +S++G+++ + + SA KE D + L A+T D IL S+ Sbjct: 536 QEDVVVTLSHQGYVKYQPLSDYEAQRRGGRGKSAARIKEEDFIDRLLVANTHDTILCFSS 595 Query: 569 DGKAYTLPAGNLL-SGRG-HGEAIQLLIDLNHNQDIVT 604 G+ Y + L + RG G I L+ L N+ I Sbjct: 596 RGRLYWMKVYQLPEASRGARGRPIVNLLPLEPNERITA 633 >gi|157690805|ref|YP_001485267.1| DNA gyrase subunit A [Bacillus pumilus SAFR-032] gi|157679563|gb|ABV60707.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Bacillus pumilus SAFR-032] Length = 839 Score = 422 bits (1086), Expect = e-116, Method: Compositional matrix adjust. Identities = 251/697 (36%), Positives = 402/697 (57%), Gaps = 50/697 (7%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 NV+ V++ + +L YA+S I RA+PD+RDG KPVHRRI++AM+++G+ FKKS Sbjct: 8 NVREVNISQEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPFKKS 67 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 ARIVGEVIGK HPHGD +VY+++VR+AQ F RY L+ G GNFG++DGD AAA RYTEAR Sbjct: 68 ARIVGEVIGKYHPHGDSAVYEAMVRMAQDFNYRYMLVDGHGNFGSVDGDGAAAMRYTEAR 127 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 +++++ IL+ + +D +D++D Y+ + EP+V P++FPNLL NG +GIAVGMAT+IP H Sbjct: 128 LSKISMEILRDITKDTIDYQDNYDGSEREPMVMPARFPNLLVNGATGIAVGMATNIPPHQ 187 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 + E+ + LA+ NPE++ ++L++ I GPDFPT G I+ R I ++Y GRG +RA+ Sbjct: 188 LGEVIDGVLAISQNPEMTTQELMDIIPGPDFPTAGQII-GRSGIRKAYETGRGSITLRAK 246 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315 +EE G IV+ EIPYQV K+RLIEKIA+L+ K+I + D+RDES + ++ Sbjct: 247 SNIEETSSGKQRIVINEIPYQVNKARLIEKIADLVRDKKIDGITDLRDESDRNGMRIVIE 306 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 R + +L+ +++ + ++T F +N+ L G+ P+V+ L L+ +L H++ ++ RR Sbjct: 307 LRRDANVHVLLNNLYKQTTLQTSFGINLLALVDGQ-PKVLSLKQCLEYYLEHQKVIIRRR 365 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVDAIL 432 +++ ++ + R IL+GL IA ++DE+IA+IR + ++ +SL+E Q AIL Sbjct: 366 TAYELRKAEARAHILEGLRIALDHLDEVIALIRGSQTAEIARNGLMENYSLSEKQAQAIL 425 Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492 ++RL+ L LE +I+ E L+ ++ ++L ++ I E+ E+KE F+ + Sbjct: 426 DMRLQRLTGLEREKIEDEYKGLVDLIAELKAILADNEKVLEIIREELTEIKERFNDT--- 482 Query: 493 GRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWI--------RSLKSHSVDLSAL 543 RRT E+ A T++ + +I E I + +++ G+I RS K + + Sbjct: 483 --RRT---EIVTAGIETIEDEDLIPVENIVITLTHNGYIKRLPASTYRSQKRGGKGVQGM 537 Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLLSGRGHGE 588 E D ++ + T D IL S GK Y +P NLL GE Sbjct: 538 GTNEDDFVEQLISTSTHDTILFFSNKGKVYRAKGYEIPEFGRTAKGIPIINLLEVE-KGE 596 Query: 589 AIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR-KGKTFLKVSSE 647 I +I ++ +D L + G + S+ AN R G L + E Sbjct: 597 WINAIIPVSE---------FDENSYLFFTTRHGVSKRTTLSQ-FANIRNNGLIALSLRDE 646 Query: 648 EKMKLVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSR 683 +++ V G+ ++G + +LI F + EM R Sbjct: 647 DELMAVRLTNGEKQIIIGTKKGMLIRFDETDVREMGR 683 >gi|167036442|ref|YP_001664020.1| DNA gyrase subunit A [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|256751446|ref|ZP_05492324.1| DNA gyrase, A subunit [Thermoanaerobacter ethanolicus CCSD1] gi|320114867|ref|YP_004185026.1| DNA gyrase subunit A [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166855276|gb|ABY93684.1| DNA gyrase, A subunit [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|256749665|gb|EEU62691.1| DNA gyrase, A subunit [Thermoanaerobacter ethanolicus CCSD1] gi|319927958|gb|ADV78643.1| DNA gyrase, A subunit [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 807 Score = 422 bits (1086), Expect = e-116, Method: Compositional matrix adjust. Identities = 260/694 (37%), Positives = 417/694 (60%), Gaps = 33/694 (4%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 +E V V + +++ Y+ YA+S I RA+PD+RDG KPVHRRI++AM+E+GL +K Sbjct: 5 KEKVIPVGIEDEMKKSYIDYAMSVIVGRALPDVRDGLKPVHRRILYAMNELGLTPDKPYK 64 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KS +VGEV+GK HPHGD +VYD+LVRLAQ F R LI G GNFG++DGD AA RYTE Sbjct: 65 KSVAVVGEVLGKYHPHGDAAVYDTLVRLAQDFSMRETLIDGHGNFGSVDGDPPAAMRYTE 124 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 AR++++A +L ++++ VDF ++E EPVV PS+FPNLL NG+ GIAVGMAT+IP Sbjct: 125 ARLSKIALEMLTDINKETVDFVPNFDETLKEPVVLPSRFPNLLVNGSQGIAVGMATNIPP 184 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E+ + +A IDNP IS+++L++YI GPDFPTGGII+ R+ I E+Y GRG VR Sbjct: 185 HNLGEVIDGIVAYIDNPYISVDELMKYIKGPDFPTGGIIL-GRDGIKETYETGRGKIVVR 243 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313 A+ +EE G IV+TEIPY V K++LIEKIAEL+ K I + D+RDES + ++ Sbjct: 244 AKAEIEE-HHGKTRIVITEIPYMVLKAKLIEKIAELVRDKHIEGISDLRDESDRNGMKIV 302 Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373 R ++P +++ ++M + M+ F M L G P+++ L I+++++ H+ +V+ Sbjct: 303 IELKRDVNPKVILNKLYMHTQMQQTFGAIMLALVDGE-PKILNLKQIIEKYVDHQADVVT 361 Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLTENQVDA 430 RR+ F ++ + R IL+GL IA +IDE+I IIR+ E K ++ +F L+E Q A Sbjct: 362 RRTKFDLRKAEERAHILEGLKIALDHIDEVINIIRSSKTEAIAKQNLMDKFGLSEKQAQA 421 Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490 I+++RL L LE +++ EL L+ + +++ +L ++ I E+ E+K+ ++ Sbjct: 422 IVDMRLGRLTGLERQKVEDELKELIEKIKELKEILADERKVLEIIKKELLEIKDKYATP- 480 Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSVDLSA 542 R+T+ V++ ++ L+ +++ E + V +++ G+I+ + K + Sbjct: 481 ----RKTSI--VAKEEELDLED-LVQLEDVVVTMTHYGYIKRMPLDTYKAQKRGGKGILG 533 Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEAIQLLIDLNHNQ 600 + +E D ++ T DR+L + GK Y+L ++ +GR G AI LI + + Sbjct: 534 ISTREDDFVEDIFITTTHDRLLFFTNKGKVYSLRTIDIPETGRQAKGTAIVNLIQIAQGE 593 Query: 601 DI--VTAFVYDSTCKLLVVSSKGNAFIVEESEIIA-NTRKGKTFLKVSSEEKMKLV-VKV 656 + V K +V+ +K I++++ I + K + ++ EE +L+ VK+ Sbjct: 594 KVTAVIPLKKSEDIKYIVMCTKKG--IIKKTSIEEFRSIKRNGIIAITLEESDELINVKL 651 Query: 657 T-GDHVAVVGENRKLLI-FSIDQIPEMSR-GKGV 687 T G+ ++G R I F+ I M R KGV Sbjct: 652 TNGEREIIIGTARGYAIRFNEKDIRPMGRVAKGV 685 >gi|146277213|ref|YP_001167372.1| DNA gyrase subunit A [Rhodobacter sphaeroides ATCC 17025] gi|145555454|gb|ABP70067.1| DNA gyrase, A subunit [Rhodobacter sphaeroides ATCC 17025] Length = 904 Score = 422 bits (1086), Expect = e-116, Method: Compositional matrix adjust. Identities = 265/716 (37%), Positives = 404/716 (56%), Gaps = 68/716 (9%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 VS+ ++ YL YA+S I RAIPDLRDG KPVHRRI++AM E G ++KSAR V Sbjct: 11 VSIAEEMKTAYLDYAMSVIVSRAIPDLRDGLKPVHRRILYAMHETGNTHDKPYRKSARPV 70 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+ +GK HPHGD ++YD+LVR+AQPF L+ GQGNFG++DGD+AAA RYTE RM + Sbjct: 71 GDTMGKYHPHGDGAIYDALVRMAQPFSMGLKLLDGQGNFGSMDGDNAAAMRYTEVRMDKP 130 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A +L +D+D VDF+D Y+ +D EP V P++FPN+L NG GIAVGMAT+IP HN+ E+ Sbjct: 131 AAFLLADIDKDTVDFQDNYDGKDREPTVLPARFPNMLVNGAGGIAVGMATNIPPHNLGEV 190 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 +A LA+I+NP+IS E+L+E I GPDFPTGG+I+ R ++Y GRG +RA+ VE Sbjct: 191 VDATLAMIENPDISTERLMEIIPGPDFPTGGVIL-GRSGARKAYLEGRGSVIMRAKVRVE 249 Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE-DVRIVLFPKNR 318 E+ + + IV+ EIPYQV K+ +IEKIA+++ K+I + ++DES VR+V+ K R Sbjct: 250 EIRKDRYAIVLDEIPYQVNKATMIEKIADMVREKKIEGIAHVQDESDRVGVRVVIELK-R 308 Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378 P++++ ++ + M+T F NM L+ GR P+ + L L +L R +V+ RR+++ Sbjct: 309 DATPEVVLNQLWRFTPMQTTFGCNMLALNGGR-PEQLTLRDFLSHFLTFREDVVARRTAY 367 Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP----KPVMVSR-------------- 420 ++ R IL GL +A N+DE++A IR+ P + +M R Sbjct: 368 ELRKARERSHILCGLAVAVSNVDEVVATIRSSADPAEARERLMTRRWPAADIADYIRLID 427 Query: 421 -----------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGK 469 ++L+E Q AIL+LRL+ L + ++ EL L A+ +L S + Sbjct: 428 DPSHTINEDGTYNLSEIQARAILDLRLQRLTAMGVKEVTDELAELAAKIRDYLDILGSRE 487 Query: 470 QQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW 529 + I+ E+REVK +F+ RRT E+S + +IE+E + V I++ G+ Sbjct: 488 RIMAIISDELREVKALFAVP-----RRT---EISEWAGDLEDEDLIEREDMVVTITSGGY 539 Query: 530 I--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL- 580 I RS + L+++ KE D + A+T ++L +TDG Y L L Sbjct: 540 IKRTPLAEFRSQRRGGKGLASMATKEDDVVTTLFVANTHTQLLFFTTDGMVYDLKCWRLP 599 Query: 581 LSGR-GHGEAIQLLIDLNHNQDIVTAFVYDST----CKLLVVSSKGNAFIVEESEIIANT 635 L GR G+AI ++ + I D +L VV F E ++ N Sbjct: 600 LGGRTAKGKAIVNILPIATGISIAALMKIDEPEAEWDRLQVV------FATSEGDVRRNR 653 Query: 636 RKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQS 691 T +K + + MKL V+ +V++ EN +++ + + G+ +R Q+ Sbjct: 654 LSDFTNVKRNGKIAMKLPEGVSLVNVSICDENDDVMMVT-------AMGRAIRFQT 702 >gi|21518737|gb|AAM60780.1|AF516183_1 topoisomerase II subunit A [Corynebacterium urealyticum] Length = 887 Score = 422 bits (1086), Expect = e-116, Method: Compositional matrix adjust. Identities = 231/564 (40%), Positives = 354/564 (62%), Gaps = 25/564 (4%) Query: 26 LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85 + E +L YA+S I RA+PD+RDG KPVHRRI++ ++E G+ ++KKSARIVG+V+GK Sbjct: 18 MRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDKSYKKSARIVGDVMGK 77 Query: 86 LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145 HPHGD S+Y+++VR+AQ F RYPL+ GQGNFG++DGD AAA RYTEARMT++ +L+ Sbjct: 78 YHPHGDLSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEARMTKITLELLR 137 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 +++D +DF D Y+ + EP V P++FPNLLANG SGIAVGMAT+IP HN+ E+ L+ Sbjct: 138 DINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATNIPPHNLTELINGVLS 197 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265 L NP+ISI +L+E I GPDFPT G+I+ + I +Y GRG ++R+R +EE G G Sbjct: 198 LSKNPDISIAELMEDIEGPDFPTAGLIL-GKSGIRRAYETGRGSIQMRSRAVIEERGGGR 256 Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA--EDVRIVLFPKNRSLDPD 323 IVVTEIP+QV K+R+IEKIAEL+ K+I + D+RDE++ VR+V+ + + + Sbjct: 257 QRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRVVIDVR-KDANAS 315 Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383 +++ +++ + ++T F +NM L GR P+++ L L +L H++ V+ RR+ + ++ Sbjct: 316 VILNNLYKQTPLQTSFGVNMIALVNGR-PKLINLKEALVHYLEHQKTVVRRRTQYNLRKA 374 Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVDAILNLRLRSLR 440 R IL+GL IA +IDEII+ IR D K M S RF L+E Q AIL++RLR L Sbjct: 375 KDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQRFKLSEKQAQAILDMRLRRLT 434 Query: 441 KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500 LE +I++E + LL +++++L + + E+ E+++ F RRT Sbjct: 435 GLERDKIEAEYNELLNYISELEAILADEEVLLQLVRDELTEIRDRFGDD-----RRT--- 486 Query: 501 EVSRADKATL-QQAMIEKEPITVVISNRGWIRSLKSHSV--------DLSALHFKEGDSL 551 E+ L + +I +E I + +S+ +I+ L + + ++ E D + Sbjct: 487 EIQLGGFEDLDDEDLIPEEQIVITLSHNNYIKRLPVSTYRAQNRGGRGVQGMNTLEEDFV 546 Query: 552 KIALHAHTTDRILLLSTDGKAYTL 575 + T D +L + G+ Y L Sbjct: 547 SQLVTLSTHDHVLFFTNKGRVYKL 570 >gi|222150259|ref|YP_002559412.1| DNA gyrase subunit A [Macrococcus caseolyticus JCSC5402] gi|222119381|dbj|BAH16716.1| DNA gyrase subunit A [Macrococcus caseolyticus JCSC5402] Length = 879 Score = 422 bits (1086), Expect = e-116, Method: Compositional matrix adjust. Identities = 256/710 (36%), Positives = 414/710 (58%), Gaps = 47/710 (6%) Query: 26 LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85 +++ +L YA+S I RA+PD+RDG KPVHRRI++ M+ G+ +KKSARIVG+V+GK Sbjct: 18 MKDSFLDYAMSVIVSRALPDVRDGMKPVHRRILYGMNNQGMTPDKPYKKSARIVGDVMGK 77 Query: 86 LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145 HPHGD S+Y+++VR+AQ F RY L+ GQGNFG++DGD AAA RYTEARM+++A +++ Sbjct: 78 YHPHGDSSIYEAMVRMAQDFSYRYMLVDGQGNFGSMDGDGAAAMRYTEARMSKIAMELMR 137 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 +++D +DF D Y+ + EPVV PS+FPNLL NG SGIAVGMAT+IP HN+ E+ L Sbjct: 138 DINKDTIDFTDNYDGNEREPVVLPSRFPNLLVNGASGIAVGMATNIPPHNLTEVINGVLE 197 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265 L NP+ISI +L+E I GPDFPT G+I+ R I +Y GRG +RA+ +E G Sbjct: 198 LSKNPDISIPELMELIQGPDFPTAGLIL-GRSGIRRAYETGRGSVIMRAKTLIETRPNGK 256 Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA--EDVRIVLFPKNRSLDPD 323 I+++EIPYQV K+RL+EKIAEL K++ + D+RDE++ E VRIV+ + R + + Sbjct: 257 ETIIISEIPYQVNKARLVEKIAELARDKKVDGITDLRDETSLKEGVRIVIDVR-RDANAN 315 Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383 +++ +++ + ++T F +NM L G+ PQV+ + + +L H++ V+ RR+++ ++ Sbjct: 316 VILNNLYKQTPLQTSFGVNMLALVDGK-PQVLNIKQAIYHYLEHQKTVVRRRTAYNLKKA 374 Query: 384 DRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAILNLRLRSLR 440 + R IL+GL IA +IDEIIA+IR N+ + + +F L+E Q AIL++RLR L Sbjct: 375 EDRAHILEGLRIALDHIDEIIALIRASNNDAEALQGLQEQFKLSERQAQAILDMRLRRLT 434 Query: 441 KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500 LE +I+SE LL +++ ++L ++ I E+ E+++ + RRT Sbjct: 435 GLERDKIESEYQELLKYIDELRAILADEEKLLQIIREELIEIRDKYGDE-----RRTEIV 489 Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DLSALHFKEGDSLK 552 D + +I++E I + +S+ +I+ L + + + ++ + D + Sbjct: 490 AGGLEDLE--DEDLIDEENIVITLSSNNYIKRLPASTYRAQHRGGRGIQGMNTLDEDFVS 547 Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVT------ 604 + T D +L + G+ Y + + LS + G I +IDL+ ++ I T Sbjct: 548 QMVTTSTHDNVLFFTNKGRVYKVKGYEIPELSRQSKGIPIVNVIDLDKDESISTMIAVKN 607 Query: 605 -----AFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD 659 A++ +T L+ S + F S I N GK + E+++ V G+ Sbjct: 608 LEREDAYIVFATKHGLIKRSNLSHF----SRINKN---GKIAINFREEDELIAVRLTDGN 660 Query: 660 HVAVVGENRKLLI-FSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707 ++G LI F +++ + R GV+ S ++G +VI + E Sbjct: 661 KQLIIGTKHASLIRFEENKLRPLGRTAAGVKGISLREG--DEVIGLDVIE 708 >gi|308182810|ref|YP_003926937.1| DNA gyrase subunit A [Helicobacter pylori PeCan4] gi|308064995|gb|ADO06887.1| DNA gyrase subunit A [Helicobacter pylori PeCan4] Length = 828 Score = 422 bits (1085), Expect = e-116, Method: Compositional matrix adjust. Identities = 245/614 (39%), Positives = 379/614 (61%), Gaps = 42/614 (6%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 +N+ V + ++EE YLAY++S I RA+PD RDG KPVHRRI++AM E+GL A+KK Sbjct: 10 KNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHELGLTSKIAYKK 69 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 SARIVG+VIGK HPHGD +VY +LVR+AQ F R L+ GQGNFG+IDGD+AAA RYTEA Sbjct: 70 SARIVGDVIGKYHPHGDNAVYGALVRMAQDFSMRLELVDGQGNFGSIDGDNAAAMRYTEA 129 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 RMT+ +E IL+ +D+D +DF Y++ EP + PS+ PNLL NG +GIAVGMATSIP H Sbjct: 130 RMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGIAVGMATSIPPH 189 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 + EI +A + +++NP ++++LE++ GPDFPTGGII + I+E+Y+ GRG +VRA Sbjct: 190 RIDEIIDALVHVLENPNAGLDEILEFVKGPDFPTGGIIY-GKAGIIEAYKTGRGRVKVRA 248 Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVL 313 + VE++ + IV+ E+P+Q K++L+E+I++L K+I + ++RDES E +R+V+ Sbjct: 249 KVHVEKM-KNKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRDESDREGIRVVI 307 Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373 K ++ ++++ ++ L+ MET F + + + + P++ L +L+ +L HR+ ++ Sbjct: 308 ELKRDAM-SEIVLNHLYKLTTMETTFSIILLAI-YNKEPKIFTLLELLRLFLNHRKTIII 365 Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVDA 430 RR+ F ++ R IL+G LIA NIDEI+ +I+ P K ++ RF+L+E Q A Sbjct: 366 RRTIFELEKAKARAHILEGYLIALDNIDEIVRLIKTSQSPEAAKNALMERFTLSEIQSKA 425 Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490 IL +RL+ L LE +IK E NLL ++ +L S + + E+ EVKE FS Sbjct: 426 ILEMRLQRLTGLERDKIKEEYQNLLELINDLNGILKSEDRLNEVVKTELLEVKEQFS--- 482 Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK---- 546 +RRT E+ A + + +I EP+ V +S +G+++ VDL A + Sbjct: 483 --SQRRT---EIQEAYENIDVEDLIANEPMVVSMSYKGYVK-----RVDLKAYERQNRGG 532 Query: 547 ---------EGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQL 592 E D ++ A+T D +L ++ G K Y +P + ++ G+AI Sbjct: 533 KGKLSGNTYEDDFIENFFVANTHDILLFITNKGQLYHLKVYKIPEASRIA---MGKAIVN 589 Query: 593 LIDLNHNQDIVTAF 606 LI L ++ I+ Sbjct: 590 LISLAPDEKIMATL 603 >gi|291277095|ref|YP_003516867.1| DNA gyrase subunit A [Helicobacter mustelae 12198] gi|290964289|emb|CBG40138.1| DNA gyrase subunit A [Helicobacter mustelae 12198] Length = 816 Score = 422 bits (1085), Expect = e-116, Method: Compositional matrix adjust. Identities = 282/770 (36%), Positives = 439/770 (57%), Gaps = 79/770 (10%) Query: 27 EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86 +E YL Y++S I RA+PD +DG KPVHRRI++AM+E+G+ +KKSARIVG+VIGK Sbjct: 17 KESYLDYSMSVIVGRALPDAKDGLKPVHRRILYAMNELGVTSKTPYKKSARIVGDVIGKY 76 Query: 87 HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQG 146 HPHGD +VYD+LVR+AQ F R L+ GQGNFG+IDGD+AAA RYTEAR+T+ +E IL+ Sbjct: 77 HPHGDSAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDNAAAMRYTEARLTKASEEILRD 136 Query: 147 VDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALAL 206 +D+D VDF Y++ EP V P++ PNLL NG+SGIAVGMATSIP H + EI +AA+ + Sbjct: 137 LDKDTVDFVPNYDDTLKEPDVLPTRIPNLLVNGSSGIAVGMATSIPPHRIDEIIDAAIYM 196 Query: 207 IDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSW 266 I + + S E+LLE++ GPDFPTGGII ++ I ++YR GRG +VRA+ +E+ + Sbjct: 197 IRHKDASSEELLEFVQGPDFPTGGIIF-GKQGIRDAYRTGRGRIKVRAKVHIEKT-KTRD 254 Query: 267 CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKNRSLDPDLL 325 IV+ E+P+QV K+RL+E+I+EL K I + ++RDES D +R+V+ K ++ +++ Sbjct: 255 VIVIDEVPFQVNKARLVEQISELARDKVIEGIAEVRDESDRDGIRVVIELKREAM-SEIV 313 Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385 + ++ S MET F + + ++ + P++ L +L ++ HR+ V+ RR+ F ++ Sbjct: 314 LNHLYKSSVMETTFGIILLAIN-NKEPKIFTLPELLNIFINHRKTVVIRRTIFDLEKAKA 372 Query: 386 RVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAILNLRLRSLRKL 442 R IL+GL IA +IDE+IA+IR+ K ++ RF L+E Q AIL +RL+ L L Sbjct: 373 RAHILEGLKIALDHIDEVIALIRSSQDVEIAKNALMERFGLSELQSKAILEMRLQRLTGL 432 Query: 443 EEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEV 502 E +I+ E +LL E E + S+L S ++ I+ E+ E+KE FS + C + Sbjct: 433 ERDKIEQEYASLLQEIEYLSSILKSEEKLNEIISNELLEIKEKFS---------SPRCTI 483 Query: 503 SRADKATLQ-QAMIEKEPITVVISNRGWIRSLKSHSVDLS--------ALHFKEGDSLKI 553 D ++ + +I EP+ V +S+RG+++ ++ + + + + D ++ Sbjct: 484 IEEDYESIDVEDLIPNEPVVVTMSHRGYVKRVQLKVYEKQNRGGKGKISGNTHDDDFIQS 543 Query: 554 ALHAHTTDRILLLSTDG-----KAYTLP-AGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV 607 A+T D IL ++ G K Y +P AG G+ IQL D I T+ Sbjct: 544 FFVANTHDTILFITNKGQLYWLKVYKIPEAGRTAIGKAVVNLIQLSSDEKIMATITTSDF 603 Query: 608 YDSTCKLLVVSSKGNAFIVEESEI--IANTRK-GKTFLKVSSEEKMKLVVKVTGD--HVA 662 +D K LV +K IV+ + + +N R G + + +++++ +T D + Sbjct: 604 HDD--KSLVFFTKNG--IVKRTNLSEYSNIRSIGVRAINLDADDELVTASIITQDVKELF 659 Query: 663 VVGENRKLLIFSIDQIPEMSRG----KGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718 V + F I+ + E+ R +R ++ +D I G T I Sbjct: 660 VATYQGMCIRFDINDVREIGRAARGVTAIRFKAKEDSVI----------GATTI------ 703 Query: 719 YNRSENDLL-----GWLGK-----------RGGVGSLVPKGFPRSGKFLS 752 RSEND L +GK RGG G +V K ++GK +S Sbjct: 704 --RSENDKLLTVSEQGIGKQTLAGAYRLQSRGGKGVIVMKLTAKTGKLVS 751 >gi|120435858|ref|YP_861544.1| DNA gyrase subunit A [Gramella forsetii KT0803] gi|117578008|emb|CAL66477.1| DNA gyrase subunit A [Gramella forsetii KT0803] Length = 843 Score = 422 bits (1085), Expect = e-115, Method: Compositional matrix adjust. Identities = 242/641 (37%), Positives = 389/641 (60%), Gaps = 39/641 (6%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 E + +++ ++ Y+ Y++S I RA+PD+RDG KPVHRR+++ M E+G+ A+KK Sbjct: 5 EKLIPINIEDEMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMYELGVLSNRAYKK 64 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 SARIVGEV+GK HPHGD SVYD++VR+AQ + RY L+ GQGNFG++DGDS AA RYTEA Sbjct: 65 SARIVGEVLGKFHPHGDSSVYDTMVRMAQHWSMRYMLVDGQGNFGSVDGDSPAAMRYTEA 124 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 RM +++E +L +D++ VD + +++ SEPVV P++ PNLL NG SGIAVGMAT++P H Sbjct: 125 RMRKISEDMLADLDKETVDTQLNFDDSLSEPVVMPTRVPNLLVNGASGIAVGMATNMPPH 184 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 N+ E+ + +A I+N +I I++L++YI PDFPTGGII + + E+++ GRG +RA Sbjct: 185 NLTEVIDGTIAYIENHDIDIDELIQYIKAPDFPTGGIIY-GYDGVREAFKTGRGRVVMRA 243 Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314 + +EE+G G +VVTEIPYQV K+ +I+K A+L+ K+I + IRDES + V++ Sbjct: 244 KSHMEEIG-GREYLVVTEIPYQVNKADMIKKTADLVNDKKIEGISLIRDESDRNGMRVVY 302 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 R P++++ ++F + +++ F +N L GR P+++ L ++ ++ HR +V+ R Sbjct: 303 QLKRDAIPNIVLNTLFKHTALQSSFSVNNIALVNGR-PEMLNLKDLIYHFVEHRHDVVVR 361 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAI 431 R+ + ++ R IL+GL+IA NIDE+IA+IR N ++ + ++ RF L+E Q AI Sbjct: 362 RTEYELRKAKERAHILEGLIIASDNIDEVIALIRASSNAEEARNKLIERFELSEIQAKAI 421 Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491 + +RLR L LE+ +++ E D +L E ++ +L +++ I E+ EVKE + Sbjct: 422 VEMRLRQLTGLEQDKLRGEYDEILNTIEDLEVILARKERRMQVIKDELLEVKEKY----- 476 Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSH------SVDLSAL 543 G R + E + D + + MI E + + IS+ G+I+ SL + V Sbjct: 477 -GDERRSQIEYAGGDLSI--EDMIPDEKVVITISHAGYIKRTSLSEYKTQNRGGVGQKGS 533 Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKA-----YTLPAGNLLSGRGHGEAIQLLIDLNH 598 + + D L+ +L + +GK Y +P G+ S G AIQ LI+++ Sbjct: 534 NTRNEDFLEYLFVGTNHQYMLFFTQNGKCYWMRVYEIPEGSKAS---KGRAIQNLINIDP 590 Query: 599 NQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGK 639 +D V AF+ K + V + +I T+KG+ Sbjct: 591 -EDKVNAFICTQDLK--------DEKYVNDHFVIMATKKGQ 622 >gi|307265428|ref|ZP_07546984.1| DNA gyrase, A subunit [Thermoanaerobacter wiegelii Rt8.B1] gi|306919542|gb|EFN49760.1| DNA gyrase, A subunit [Thermoanaerobacter wiegelii Rt8.B1] Length = 807 Score = 422 bits (1085), Expect = e-115, Method: Compositional matrix adjust. Identities = 261/694 (37%), Positives = 417/694 (60%), Gaps = 33/694 (4%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 +E V V + +++ Y+ YA+S I RA+PD+RDG KPVHRRI++AM+E+GL +K Sbjct: 5 KEKVIPVDIEDEMKKSYIDYAMSVIVGRALPDVRDGLKPVHRRILYAMNELGLTPDKPYK 64 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KS +VGEV+GK HPHGD +VYD+LVRLAQ F R LI G GNFG+IDGD AA RYTE Sbjct: 65 KSVAVVGEVLGKYHPHGDAAVYDTLVRLAQDFSMRETLIDGHGNFGSIDGDPPAAMRYTE 124 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 AR++++A +L ++++ VDF ++E EPVV PS+FPNLL NG+ GIAVGMAT+IP Sbjct: 125 ARLSKIALEMLTDINKETVDFVPNFDETLKEPVVLPSRFPNLLVNGSQGIAVGMATNIPP 184 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E+ + +A IDNP IS+++L++YI GPDFPTGGII+ R+ I E+Y GRG VR Sbjct: 185 HNLGEVIDGIVAYIDNPYISVDELMKYIKGPDFPTGGIIL-GRDGIKETYETGRGKIVVR 243 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313 A+ +EE G IV+TEIPY V K++LIEKIAEL+ K I + D+RDES + ++ Sbjct: 244 AKAEIEE-HHGKTRIVITEIPYMVLKAKLIEKIAELVRDKHIEGISDLRDESDRNGMKIV 302 Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373 R ++P +++ ++M + M+ F M L G P+++ L I+++++ H+ +V+ Sbjct: 303 IELKRDVNPKVILNKLYMHTQMQQTFGAIMLALVDGE-PKILNLKQIIEKYVDHQADVVT 361 Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLTENQVDA 430 RR+ F ++ + R IL+GL IA +IDE+I IIR+ E K ++ +F L+E Q A Sbjct: 362 RRTKFDLRKAEERAHILEGLKIALDHIDEVINIIRSSRTEAIAKQNLMDKFGLSEKQAQA 421 Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490 I+++RL L LE +++ EL L+ + +++ +L ++ I E+ E+K+ ++ Sbjct: 422 IVDMRLGRLTGLERQKVEDELKELIEKIKELKEILADERKVLEIIKKELLEIKDKYATP- 480 Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSVDLSA 542 R+T+ V++ ++ L+ +++ E + V +++ G+I+ + K + Sbjct: 481 ----RKTSI--VAKEEELDLED-LVQLEDVVVTMTHYGYIKRMPLDTYKAQKRGGKGILG 533 Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEAIQLLIDLNHNQ 600 + +E D ++ T DR+L + GK Y+L ++ +GR G AI LI + + Sbjct: 534 ISTREDDFVEDIFITTTHDRLLFFTNKGKVYSLRTIDIPETGRQAKGTAIVNLIQIAQGE 593 Query: 601 DI--VTAFVYDSTCKLLVVSSKGNAFIVEESEIIA-NTRKGKTFLKVSSEEKMKLV-VKV 656 + V K +V+ +K I++++ I + K + ++ EE +L+ VK+ Sbjct: 594 KVTAVIPLKKSEDIKYIVMCTKKG--IIKKTSIEEFRSIKRNGIIAITLEESDELINVKL 651 Query: 657 T-GDHVAVVGENRKLLI-FSIDQIPEMSR-GKGV 687 T G+ ++G R I F+ I M R KGV Sbjct: 652 TNGEREIIIGTARGYAIRFNEKDIRPMGRVAKGV 685 >gi|260062506|ref|YP_003195586.1| DNA gyrase subunit A [Robiginitalea biformata HTCC2501] gi|88784071|gb|EAR15241.1| DNA gyrase A subunit [Robiginitalea biformata HTCC2501] Length = 848 Score = 422 bits (1085), Expect = e-115, Method: Compositional matrix adjust. Identities = 238/609 (39%), Positives = 372/609 (61%), Gaps = 31/609 (5%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 E + +++ ++ Y+ Y++S I RA+PD+RDG KPVHRR+++ M E+G+ +A KK Sbjct: 5 EKLIPINIEDEMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMHELGVRSTSAHKK 64 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 SARIVGEV+GK HPHGD SVYD++VRLAQ + RY L+ GQGNFG+IDGDS AA RYTEA Sbjct: 65 SARIVGEVLGKYHPHGDSSVYDTMVRLAQDWSMRYMLVDGQGNFGSIDGDSPAAMRYTEA 124 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 RM ++AE +L +D++ VD + +++ EP V P++ PNLL NG SGIAVGMAT++P H Sbjct: 125 RMRKIAEEMLADIDKETVDHQLNFDDSLEEPTVLPTRIPNLLVNGASGIAVGMATNMPPH 184 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 N+ E+ + +A ID+ +I+IE L+++I PDFPTGGII + + E++ GRG +RA Sbjct: 185 NLSEVVDGTIAYIDDRDITIEGLMQHIKAPDFPTGGIIY-GYDGVKEAFETGRGRVVMRA 243 Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314 + EEV +G CIVVTEIPYQV K+ +I+K +LI K+I + IRDES +++ Sbjct: 244 KATFEEV-QGRECIVVTEIPYQVNKADMIKKTVDLINEKKIEGIATIRDESNRKGMRIVY 302 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 R P++++ ++ S +++ F +N N+ +G P+++ L ++ ++ HR +V+ R Sbjct: 303 VLKRDAIPNIVLNMLYKYSALQSSFSVN-NIALVGGRPELLNLKDLIVHFVDHRHKVVVR 361 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAI 431 RS + ++ + R IL+GL+IA NIDE+IAIIR N ++ + ++ RF L+E Q AI Sbjct: 362 RSEYELRKAEERAHILEGLIIASDNIDEVIAIIRGSANAEEARANLIKRFELSEVQARAI 421 Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491 + +RLR L LE+ +++SE + +LA E + +L +++ I E+REV++ + Sbjct: 422 VEMRLRQLTGLEQDKLRSEYEEVLATIEDLKDILAREERRMEIIKDELREVRDKYGDD-- 479 Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSAL 543 RR+ E++ A + MI E + + IS+ G+I ++ V A Sbjct: 480 ---RRS---EINYAGGDLSIEDMIPDEQVVITISHAGYIKRTPLTEYKTQHRGGVGQKAS 533 Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTL-----PAGNLLSGRGHGEAIQLLIDLNH 598 + D L+ +L + G+ Y L P G+ S G AIQ LI++ Sbjct: 534 ATRNEDFLEHLFVGTNHQYMLFFTQKGQCYWLRVFEIPEGSRTS---KGRAIQNLINIEQ 590 Query: 599 NQDIVTAFV 607 + D V AF+ Sbjct: 591 D-DKVKAFI 598 >gi|305667582|ref|YP_003863869.1| DNA gyrase subunit A [Maribacter sp. HTCC2170] gi|88709632|gb|EAR01865.1| DNA gyrase A subunit [Maribacter sp. HTCC2170] Length = 844 Score = 422 bits (1085), Expect = e-115, Method: Compositional matrix adjust. Identities = 237/609 (38%), Positives = 370/609 (60%), Gaps = 31/609 (5%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 E + +++ ++ Y+ Y++S I RA+PD+RDG KPVHRR+++ M E+G+ +A KK Sbjct: 5 EKLIPINIEDEMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMHELGVRSNSAHKK 64 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 SARIVGEV+GK HPHGD SVYDS+VR+AQ + RY L+ GQGNFG+IDGDS AA RYTEA Sbjct: 65 SARIVGEVLGKYHPHGDTSVYDSMVRMAQEWSLRYMLVDGQGNFGSIDGDSPAAMRYTEA 124 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 RM ++A+ +L +D+D VD + +++ EP V P++ PNLL NG SGIAVGMAT++P H Sbjct: 125 RMRKIADDMLADIDKDTVDHQLNFDDSLQEPTVLPTRVPNLLVNGASGIAVGMATNMPPH 184 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 N+ E+ + +A IDN +I I++L+ +I PDFPTGGII + + E++ GRG +RA Sbjct: 185 NLSEVVDGTVAYIDNNDIEIDELITHIKAPDFPTGGIIY-GYDGVKEAFHTGRGRVVMRA 243 Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314 + +EEV +G CI+VTEIPYQV K+ +I+K A+L+ K+I + IRDES V++ Sbjct: 244 KAVIEEV-QGRECIIVTEIPYQVNKADMIKKTADLVNDKKIEGISTIRDESDRKGMRVVY 302 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 R P++++ ++ + +++ F +N L GR PQ++ + ++ ++ HR EV+ R Sbjct: 303 ILKRDAIPNIVLNMLYKYTALQSSFSVNNIALVNGR-PQMLNVKEMIHYFVEHRHEVVVR 361 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAI 431 R+ + ++ + R IL+GL+IA NIDE+IAIIR N D+ + ++ RF LTE Q AI Sbjct: 362 RTKYELKKAEDRAHILEGLIIASDNIDEVIAIIRASSNADQARENLMERFKLTEIQAKAI 421 Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491 + +RLR L LE+ +++SE + ++ + +L+ +++ I E+ EVK+ + Sbjct: 422 VEMRLRQLTGLEQDKLRSEYEEVIKTIADLKDILDRKERRMQIIKDELLEVKDKYGDE-- 479 Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSAL 543 RR+ E++ A + MI E + + IS+ G+I ++ V A Sbjct: 480 ---RRS---EINFAGGDLSIEDMIPNEQVVITISHAGYIKRTPLSEYKTQNRGGVGQKAS 533 Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKA-----YTLPAGNLLSGRGHGEAIQLLIDLNH 598 + D L+ +L + GK Y +P G+ S G AIQ LI++ Sbjct: 534 STRNEDFLEHLFVGTNHQYMLFFTQKGKCFWMRVYEIPEGSRTS---KGRAIQNLINIEQ 590 Query: 599 NQDIVTAFV 607 + D V AF+ Sbjct: 591 D-DKVKAFI 598 >gi|295429303|ref|ZP_06821925.1| hypothetical protein SIAG_01513 [Staphylococcus aureus subsp. aureus EMRSA16] gi|295127062|gb|EFG56706.1| hypothetical protein SIAG_01513 [Staphylococcus aureus subsp. aureus EMRSA16] Length = 887 Score = 422 bits (1085), Expect = e-115, Method: Compositional matrix adjust. Identities = 241/614 (39%), Positives = 376/614 (61%), Gaps = 30/614 (4%) Query: 26 LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85 + E +L YA+S I RA+PD+RDG KPVHRRI++ ++E G+ ++KKSARIVG+V+GK Sbjct: 19 MRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDKSYKKSARIVGDVMGK 78 Query: 86 LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145 HPHGD S+Y+++VR+AQ F RYPL+ GQGNFG++DGD AAA RYTEARMT++ +L+ Sbjct: 79 YHPHGDLSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEARMTKITLELLR 138 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 +++D +DF D Y+ + EP V P++FPNLLANG SGIAVGMAT+IP HN+ E+ L+ Sbjct: 139 DINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATNIPPHNLTELINGVLS 198 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265 L NP+ISI +L+E I GPDFPT G+I+ + I +Y GRG ++R+R +EE G G Sbjct: 199 LSKNPDISIAELMEDIEGPDFPTAGLIL-GKSGIRRAYETGRGSIQMRSRAVIEERGGGR 257 Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA--EDVRIVLFPKNRSLDPD 323 IVVTEIP+QV K+R+IEKIAEL+ K+I + D+RDE++ VR+V+ + + + Sbjct: 258 QRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRVVIDVR-KDANAS 316 Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383 +++ +++ + ++T F +NM L GR P+++ L L +L H++ V+ RR+ + ++ Sbjct: 317 VILNNLYKQTPLQTSFGVNMIALVNGR-PKLINLKEALVHYLEHQKTVVRRRTQYNLRKA 375 Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVDAILNLRLRSLR 440 R IL+GL IA +IDEII+ IR + K M S RF L+E Q AIL++RLR L Sbjct: 376 KDRAHILEGLRIALDHIDEIISTIRESETDKVAMESLQQRFKLSEKQAQAILDMRLRRLT 435 Query: 441 KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500 LE +I++E + LL +++++L + + E+ E+++ F RRT Sbjct: 436 GLERDKIEAEYNELLNYISELEAILADEEVLLQLVRDELTEIRDRFGDD-----RRT--- 487 Query: 501 EVSRADKATLQ-QAMIEKEPITVVISNRGWIRSLKSHSV--------DLSALHFKEGDSL 551 E+ L+ + +I +E I + +S+ +I+ L + + ++ E D + Sbjct: 488 EIQLGGFEDLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRAQNRGGRGVQGMNTLEEDFV 547 Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAFV-- 607 + T D +L + G+ Y L + LS + G + I+L +++ I T Sbjct: 548 SQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIELENDEIISTMIAVK 607 Query: 608 -YDSTCKLLVVSSK 620 +S LV ++K Sbjct: 608 DLESEDNFLVFATK 621 >gi|253687499|ref|YP_003016689.1| DNA gyrase, A subunit [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251754077|gb|ACT12153.1| DNA gyrase, A subunit [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 879 Score = 422 bits (1085), Expect = e-115, Method: Compositional matrix adjust. Identities = 249/605 (41%), Positives = 358/605 (59%), Gaps = 60/605 (9%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + V++ L+ YL YA+S I RA+PD+RDG KPVHRR+++AMS +G D+ +KKSA Sbjct: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSVLGNDWNKPYKKSA 67 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD +VY+++VR+AQPF RY L+ GQGNFG+IDGDSAAA RYTE RM Sbjct: 68 RVVGDVIGKYHPHGDSAVYETIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRM 127 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 +++A +L ++++ VDF Y+ + P V P++ PNLL NG+SGIAVGMAT+IP HN+ Sbjct: 128 SKIAHELLADLEKETVDFVPNYDGTEQIPDVMPTRIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ LA ID+ IS+E L+E+I GPDFPT II R I E+YR GRG +RAR Sbjct: 188 TEVVNGCLAYIDDENISLEGLMEHIKGPDFPTAAII-NGRRGIEEAYRTGRGKIYIRARA 246 Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314 VE + G I+V EIPYQV K+RLIEKIAEL+ KRI + +RDES +D +RIV+ Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRIEGISALRDESDKDGMRIVIE 306 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K ++ ++++ +++ + ++T F +NM L G+ P++MPL IL ++ HRREV+ R Sbjct: 307 IKRDAVG-EVVLNNLYSQTQLQTSFGINMVALHQGQ-PKIMPLKDILVAFVRHRREVVTR 364 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS--------------- 419 R+ F ++ R IL+GL IA NID II +IR P S Sbjct: 365 RTIFELRKARDRAHILEGLAIALANIDPIIELIRRAPSPAEAKASLIAQAWELGSVAAML 424 Query: 420 ----------------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457 R+ LTE Q AIL+LRL+ L +E ++ E LLAE Sbjct: 425 ERAGDDAARPEWLEPEFGIRDGRYYLTEQQAQAILDLRLQKLTGMEHEKLLDEYKALLAE 484 Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ-QAMIE 516 ++ +LNS ++ I E+ +K +S RRT A+ A + + +I Sbjct: 485 IAELLYILNSPERLMEVIREELEAIKTQYSDE-----RRTEIT----ANSADINIEDLIN 535 Query: 517 KEPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568 +E + V +S++G+++ + + SA KE D + L A+T D IL S+ Sbjct: 536 QEDVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSS 595 Query: 569 DGKAY 573 G+ Y Sbjct: 596 RGRLY 600 >gi|157164331|ref|YP_001466491.1| DNA gyrase subunit A [Campylobacter concisus 13826] gi|112800669|gb|EAT98013.1| DNA gyrase, A subunit [Campylobacter concisus 13826] Length = 873 Score = 422 bits (1085), Expect = e-115, Method: Compositional matrix adjust. Identities = 244/605 (40%), Positives = 381/605 (62%), Gaps = 32/605 (5%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 +++ +V + +++ YL Y++S I RA+PD RDG KPVHRRI++AM +G+ +A+ K Sbjct: 10 QDIASVDIEDSIKNSYLDYSMSVIVGRALPDARDGLKPVHRRILYAMDNLGVGSRSAYMK 69 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 SARIVGEVIGK HPHGD +VYD+LVR+AQ F RYP++ GQGNFG+IDGDSAAA RYTEA Sbjct: 70 SARIVGEVIGKYHPHGDTAVYDALVRMAQKFSMRYPVVDGQGNFGSIDGDSAAAMRYTEA 129 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 RMT + E +L+ +D+D VDF Y++ + EP V PS+ PNLL NG+SGIAVGMAT+IP H Sbjct: 130 RMTMLTEELLKDIDKDTVDFVPNYDDREVEPDVLPSRVPNLLLNGSSGIAVGMATNIPPH 189 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 ++ E+ + L L++N E ++E+++E+I GPDFPTGGII ++ I+E+YR GRG ++RA Sbjct: 190 SLDELIDGLLLLLENKEATLEEVMEFIKGPDFPTGGIIF-GKKGIIEAYRTGRGRVKLRA 248 Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVL 313 + +E+ IV+ E+PYQ K+RLIE+IAEL+ K+I + ++RDES +D +R+V+ Sbjct: 249 KTHIEK-KPNKDVIVIDELPYQTNKARLIEQIAELVKDKQIDGISEVRDESDKDGIRVVI 307 Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373 K ++ D+++ ++F + ME+ F + M ++ + P+V L +LK +L HR+ V+ Sbjct: 308 ELKRDAM-SDIVLNNLFKSTTMESTFGVIMLAIN-NKEPKVFNLIELLKLFLNHRKTVII 365 Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDA 430 RR+ F ++ R IL+GL IA NIDE+I +IRN + ++S+F+L+E Q +A Sbjct: 366 RRTIFELEKARARAHILEGLKIALDNIDEVIELIRNSADTAVAREGLMSKFNLSELQANA 425 Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490 IL++RL L LE ++++EL L+AE ++D +L S N I E+ E+K F Sbjct: 426 ILDMRLSKLTGLEREKLEAELAELMAEIARLDEILKSETLLENLIKEELLEIKNKF---- 481 Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS--------A 542 + E+ + +I E + V I++RG+I+ + S + A Sbjct: 482 ----KVPRVTEIVDDYDDIDIEDLIPNENMVVTITHRGYIKRVPSKQYEKQKRGGKGKVA 537 Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDLN 597 + + D ++ ++T D ++ ++ G K Y +P G S G+A+ LI L Sbjct: 538 VTTYDDDFIESFFTSNTHDTLMFVTDRGQLYWLKVYKIPEG---SRTAKGKAVVNLIQLQ 594 Query: 598 HNQDI 602 ++ I Sbjct: 595 PDEKI 599 >gi|49482259|ref|YP_039483.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus MRSA252] gi|221141521|ref|ZP_03566014.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus str. JKD6009] gi|59797754|sp|Q6GKT9|GYRA_STAAR RecName: Full=DNA gyrase subunit A gi|49240388|emb|CAG39034.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus MRSA252] gi|269939532|emb|CBI47890.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus TW20] gi|302749917|gb|ADL64094.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Staphylococcus aureus subsp. aureus str. JKD6008] Length = 886 Score = 422 bits (1085), Expect = e-115, Method: Compositional matrix adjust. Identities = 241/614 (39%), Positives = 376/614 (61%), Gaps = 30/614 (4%) Query: 26 LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85 + E +L YA+S I RA+PD+RDG KPVHRRI++ ++E G+ ++KKSARIVG+V+GK Sbjct: 18 MRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDKSYKKSARIVGDVMGK 77 Query: 86 LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145 HPHGD S+Y+++VR+AQ F RYPL+ GQGNFG++DGD AAA RYTEARMT++ +L+ Sbjct: 78 YHPHGDLSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEARMTKITLELLR 137 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 +++D +DF D Y+ + EP V P++FPNLLANG SGIAVGMAT+IP HN+ E+ L+ Sbjct: 138 DINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATNIPPHNLTELINGVLS 197 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265 L NP+ISI +L+E I GPDFPT G+I+ + I +Y GRG ++R+R +EE G G Sbjct: 198 LSKNPDISIAELMEDIEGPDFPTAGLIL-GKSGIRRAYETGRGSIQMRSRAVIEERGGGR 256 Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA--EDVRIVLFPKNRSLDPD 323 IVVTEIP+QV K+R+IEKIAEL+ K+I + D+RDE++ VR+V+ + + + Sbjct: 257 QRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRVVIDVR-KDANAS 315 Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383 +++ +++ + ++T F +NM L GR P+++ L L +L H++ V+ RR+ + ++ Sbjct: 316 VILNNLYKQTPLQTSFGVNMIALVNGR-PKLINLKEALVHYLEHQKTVVRRRTQYNLRKA 374 Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVDAILNLRLRSLR 440 R IL+GL IA +IDEII+ IR + K M S RF L+E Q AIL++RLR L Sbjct: 375 KDRAHILEGLRIALDHIDEIISTIRESETDKVAMESLQQRFKLSEKQAQAILDMRLRRLT 434 Query: 441 KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500 LE +I++E + LL +++++L + + E+ E+++ F RRT Sbjct: 435 GLERDKIEAEYNELLNYISELEAILADEEVLLQLVRDELTEIRDRFGDD-----RRT--- 486 Query: 501 EVSRADKATLQ-QAMIEKEPITVVISNRGWIRSLKSHSV--------DLSALHFKEGDSL 551 E+ L+ + +I +E I + +S+ +I+ L + + ++ E D + Sbjct: 487 EIQLGGFEDLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRAQNRGGRGVQGMNTLEEDFV 546 Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAFV-- 607 + T D +L + G+ Y L + LS + G + I+L +++ I T Sbjct: 547 SQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIELENDEIISTMIAVK 606 Query: 608 -YDSTCKLLVVSSK 620 +S LV ++K Sbjct: 607 DLESEDNFLVFATK 620 >gi|1170143|sp|P41513|GYRA_ERWCA RecName: Full=DNA gyrase subunit A gi|525202|emb|CAA56777.1| DNA topoisomerase (ATP-hydrolysing) [Pectobacterium carotovorum] Length = 878 Score = 422 bits (1085), Expect = e-115, Method: Compositional matrix adjust. Identities = 277/735 (37%), Positives = 412/735 (56%), Gaps = 77/735 (10%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + V++ L+ YL YA+S I RA+PD+RDG KPVHRR+++AMS +G D+ +KKSA Sbjct: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSVLGNDWNKPYKKSA 67 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD +VY+++VR+AQPF RY L+ GQGNFG+IDGDSAAA RYTE RM Sbjct: 68 RVVGDVIGKYHPHGDSAVYETIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRM 127 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 +++A +L ++++ VDF Y+ + P V P++ PNLL NG+SGIAVGMAT+IP HN+ Sbjct: 128 SKIAHELLADLEKETVDFVPNYDGTEQIPDVMPTRIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ LA ID+ IS+E L+E+I GPDFPT II R I E+YR GRG +RAR Sbjct: 188 TEVVNGCLAYIDDENISLEGLMEHIKGPDFPTAAII-NGRRGIEEAYRTGRGKIYIRARA 246 Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314 VE + G I+V EIPYQV K+RLIEKIAEL+ KRI + +RDES +D +RIV+ Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRIEGISALRDESDKDGMRIVIE 306 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K ++ ++++ +++ + ++T F +NM L G+ P++MPL IL ++ HRREV+ R Sbjct: 307 IKRDAVG-EVVLNNLYSQTQLQTSFGINMVALHQGQ-PKIMPLKDILVAFVRHRREVVTR 364 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS--------------- 419 R+ F ++ R IL+GL IA NID II +IR P S Sbjct: 365 RTIFELRKARDRAHILEGLAIALANIDPIIELIRRAASPAEAKASLIAQAWELGSVATML 424 Query: 420 ----------------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457 R+ LTE Q AIL+LRL+ L +E ++ E LLAE Sbjct: 425 ERAGDDAARPEWLEPEFGIRDGRYYLTEQQAQAILDLRLQKLTGMEHEKLLDEYKELLAE 484 Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ-QAMIE 516 ++ +LNS ++ I E+ K +S RRT A+ A + + +I Sbjct: 485 IAELLYILNSPERLMEVIREELEAFKTQYSDE-----RRTEIT----ANTADINIEDLIN 535 Query: 517 KEPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568 +E + V +S++G+++ + + SA KE D + L A+T D IL S+ Sbjct: 536 QEDVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSS 595 Query: 569 DGKAYTLPAGNLL-SGRG-HGEAIQLLIDLNHNQDIVTAFV----YDSTCKLLVVSSKGN 622 G+ Y + L + RG G I L+ L ++ I TA + Y+ + + ++ G Sbjct: 596 RGRLYWMKVYQLPEASRGARGRPIVNLLPLEADERI-TAILPVREYEEGRHIFMATASGT 654 Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEKMKLV-VKVT--GDHVAVVGENRKLLIFSIDQIP 679 V+++ + +R + V+ E +L+ V +T D + K++ FS + Sbjct: 655 ---VKKTALTEFSRHVSGIIAVNLNEGDELIGVDLTDGSDEAMLFSAEGKVVRFSEQAVR 711 Query: 680 EMSRG----KGVRLQ 690 M R +G+ LQ Sbjct: 712 SMGRTATGVRGINLQ 726 >gi|188527452|ref|YP_001910139.1| DNA gyrase subunit A [Helicobacter pylori Shi470] gi|188143692|gb|ACD48109.1| DNA gyrase subunit A [Helicobacter pylori Shi470] Length = 826 Score = 422 bits (1085), Expect = e-115, Method: Compositional matrix adjust. Identities = 247/625 (39%), Positives = 381/625 (60%), Gaps = 46/625 (7%) Query: 4 DNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63 DN+ N +N+ V + ++EE YLAY++S I RA+PD RDG KPVHRRI++AM E Sbjct: 3 DNLINET----KNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHE 58 Query: 64 MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123 +GL A+KKSARIVG+VIGK HPHGD +VYD+LVR+AQ F R L+ GQGNFG+IDG Sbjct: 59 LGLTSKVAYKKSARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSIDG 118 Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183 D+AAA RYTEARMT+ +E IL+ +D+D +DF Y++ EP + PS+ PNLL NG +GI Sbjct: 119 DNAAAMRYTEARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGI 178 Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243 AVGMATSIP H + EI +A + +++NP ++++LE++ GPDFPTGGII + I+E+Y Sbjct: 179 AVGMATSIPPHRIDEIIDALVHVLENPNAGLDEILEFVKGPDFPTGGIIY-GKAGIIEAY 237 Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303 + GRG +VRA+ VE+ + IV+ E+P+Q K++L+E+I++L K+I + ++RD Sbjct: 238 KTGRGRVKVRAKVHVEKT-KNKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRD 296 Query: 304 ES-AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362 ES E +R+V+ K ++ ++++ ++ L+ MET F + + + + P++ L +L+ Sbjct: 297 ESDREGIRVVIELKRDAM-SEIVLNHLYKLTTMETTFSIILLAI-YNKEPKIFTLLELLR 354 Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVS 419 +L HR+ ++ RR+ F ++ R IL+G LIA NIDEI+ +I+ P K ++ Sbjct: 355 LFLNHRKTIIIRRTIFELEKAKARAHILEGYLIALDNIDEIVRLIKTSQSPEAAKDALME 414 Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479 RF+L+E Q AIL +RL+ L LE +IK E NLL ++ +L S + + E+ Sbjct: 415 RFTLSEIQSKAILEMRLQRLTGLERDKIKEEYQNLLELISDLNGILKSEDRLNEVVKTEL 474 Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539 EVKE FS +R T E+ + + +I EP+ V +S +G+++ VD Sbjct: 475 LEVKEQFSS------QRCT--EIQEVYENIDIEDLIANEPMVVSMSYKGYVK-----RVD 521 Query: 540 LSALHFK-------------EGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLL 581 L A + E D ++ A+T D +L ++ G K Y +P + + Sbjct: 522 LKAYERQNRGGKGKLSGNTYEDDFIENFFVANTHDILLFITNKGQLYRLKVYKIPEASRI 581 Query: 582 SGRGHGEAIQLLIDLNHNQDIVTAF 606 + G+AI LI L ++ I+ Sbjct: 582 A---MGKAIVNLISLAPDEKIMATL 603 >gi|94266204|ref|ZP_01289913.1| DNA gyrase, subunit A [delta proteobacterium MLMS-1] gi|93453211|gb|EAT03669.1| DNA gyrase, subunit A [delta proteobacterium MLMS-1] Length = 850 Score = 422 bits (1085), Expect = e-115, Method: Compositional matrix adjust. Identities = 258/704 (36%), Positives = 400/704 (56%), Gaps = 48/704 (6%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 E++ VS+ L + YL YA+S I RA+PD+RDG KPVHRR+++AM E+ F K Sbjct: 13 EDIPNVSIEKELRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMRELNNYHNRPFLK 72 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 SARIVG+VIGK HPHGD +VYD+LVR+AQ F RYPL+ GQGNFG++DGD AA RYTEA Sbjct: 73 SARIVGDVIGKYHPHGDSAVYDTLVRMAQSFAMRYPLVDGQGNFGSVDGDPPAAMRYTEA 132 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 RMT++ + ++ +D++ VDF TY+ +EP+VFP++ PNLL NG++GIAVGMAT+IP H Sbjct: 133 RMTRIDQELISDLDKETVDFIPTYDNSQNEPLVFPARIPNLLVNGSAGIAVGMATNIPPH 192 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 N++E+ + + +I++P I++ L+E I GPDFPTGG I R I E+Y GRG +R+ Sbjct: 193 NLREVLDGLITMIEDPNITVSSLMEIISGPDFPTGGFIC-GRAGIREAYETGRGSLLIRS 251 Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVL 313 R +E+ G IV+TEIPYQ KS L+EKIA LI KRI + + RDES +RIV+ Sbjct: 252 RHHIEKHKSGREVIVITEIPYQQNKSTLLEKIAMLIKEKRIEAIAEFRDESDRHGMRIVI 311 Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNM-NVLSMGRVPQVMPLDGILKEWLAHRREVL 372 K + ++++ ++ ++ ++ F + M ++++M P+V+ L IL+ ++ HR+ V+ Sbjct: 312 ELKKDEI-AEVVINQLYKMTPLQKSFGIIMLSIVNMR--PEVLNLRQILENFILHRKTVV 368 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVD 429 +RR+++ ++ + + +L+GL IA N+DE++A+I+ P+ +++RF L+ Q Sbjct: 369 YRRTAYDLRKAEEKAHVLEGLKIAITNLDEVVALIKASANPQEAREGLINRFGLSAIQAQ 428 Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489 AIL +RL L LE +I E D L+ E + +L I E ++E + Sbjct: 429 AILEMRLHRLTGLEREKIIEEYDALMKEIIWLRQVLGDESLVMKIIREEFEAIRETYGDD 488 Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549 RRT E+ A L + MI +E + V +++ G+I K + VD + G Sbjct: 489 -----RRT---EIIDAPDEILPEDMIAREEMVVTVTHAGYI---KRNPVDTYRSQRRGGK 537 Query: 550 SLKIALH-----------AHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLL 593 +K A A T D +L S G K Y +P L+ G+A+ L Sbjct: 538 GIKGAGTTDEDFVSWMQVASTHDTLLFFSNKGRVFWRKVYEIPQAGRLA---RGKAVVNL 594 Query: 594 IDLNHNQDIVTAFVYDS-------TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS 646 ++L + + DS +L+ + KG SE ++GK L + Sbjct: 595 LELGAEEKVAAILPVDSFEVTEGGARYILMATKKGVVKKTALSEFARPLKRGKIALTIRE 654 Query: 647 EEKMKLVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSRG-KGVR 688 ++++ TGD+ ++ R + + F I M RG GVR Sbjct: 655 DDEILGASLTTGDNEVLLLSRRGMAVRFHEGDIRAMGRGASGVR 698 >gi|326390354|ref|ZP_08211913.1| DNA gyrase, A subunit [Thermoanaerobacter ethanolicus JW 200] gi|325993631|gb|EGD52064.1| DNA gyrase, A subunit [Thermoanaerobacter ethanolicus JW 200] Length = 807 Score = 422 bits (1085), Expect = e-115, Method: Compositional matrix adjust. Identities = 261/694 (37%), Positives = 416/694 (59%), Gaps = 33/694 (4%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 +E V V + +++ Y+ YA+S I RA+PD+RDG KPVHRRI++AM+E+GL +K Sbjct: 5 KEKVIPVDIEDEMKKSYIDYAMSVIVGRALPDVRDGLKPVHRRILYAMNELGLTPDKPYK 64 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KS +VGEV+GK HPHGD +VYD+LVRLAQ F R LI G GNFG+IDGD AA RYTE Sbjct: 65 KSVAVVGEVLGKYHPHGDAAVYDTLVRLAQDFSMRETLIDGHGNFGSIDGDPPAAMRYTE 124 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 AR++++A +L ++++ VDF ++E EPVV PS+FPNLL NG+ GIAVGMAT+IP Sbjct: 125 ARLSKIALEMLTDINKETVDFVPNFDETLKEPVVLPSRFPNLLVNGSQGIAVGMATNIPP 184 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E+ + +A IDNP IS+++L++YI GPDFPTGGII+ R+ I E+Y GRG VR Sbjct: 185 HNLGEVIDGIVAYIDNPYISVDELMKYIKGPDFPTGGIIL-GRDGIKETYETGRGKIVVR 243 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313 A+ +EE G IV+TEIPY V K++LIEKIAEL+ K I + D+RDES + ++ Sbjct: 244 AKAEIEE-HHGKTRIVITEIPYMVLKAKLIEKIAELVRDKHIEGISDLRDESDRNGMKIV 302 Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373 R ++P +++ ++M + M+ F M L G P+++ L I+++++ H+ +V+ Sbjct: 303 IELKRDVNPKVILNKLYMHTQMQQTFGAIMLALVDGE-PKILNLKQIIEKYVDHQADVVT 361 Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLTENQVDA 430 RR+ F ++ + R IL+GL IA +IDE+I IIR+ E K ++ +F L+E Q A Sbjct: 362 RRTKFDLRKAEERAHILEGLKIALDHIDEVINIIRSSRTEAIAKQNLMDKFGLSEKQAQA 421 Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490 I+++RL L LE +++ EL L+ + +++ +L ++ I E+ E+K+ ++ Sbjct: 422 IVDMRLGRLTGLERQKVEDELKELIEKIKELKEILADERKVLEIIKKELLEIKDKYATP- 480 Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSVDLSA 542 R+T+ V++ ++ L+ +++ E + V +++ G+I+ + K + Sbjct: 481 ----RKTSI--VAKEEELDLED-LVQLEDVVVTMTHYGYIKRMPLDTYKAQKRGGKGILG 533 Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEAIQLLIDLNHNQ 600 + +E D ++ T DR+L + GK Y+L ++ +GR G AI LI + + Sbjct: 534 ISTREDDFVEDIFITTTHDRLLFFTNKGKVYSLRTIDIPETGRQAKGTAIVNLIQIAQGE 593 Query: 601 DI--VTAFVYDSTCKLLVVSSKGNAFIVEESEIIA-NTRKGKTFLKVSSEEKMKLV-VKV 656 + V K +V+ +K I++++ I + K + ++ EE +L+ VK+ Sbjct: 594 KVTAVIPLKKSEDIKYIVMCTKKG--IIKKTSIEEFRSIKRNGIIAITLEESDELINVKL 651 Query: 657 T-GDHVAVVGENRKLLI-FSIDQIPEMSR-GKGV 687 T G+ ++G R I F I M R KGV Sbjct: 652 TNGEREIIIGTARGYAIRFDEKDIRPMGRVAKGV 685 >gi|257470426|ref|ZP_05634517.1| DNA gyrase subunit A [Fusobacterium ulcerans ATCC 49185] gi|317064634|ref|ZP_07929119.1| DNA gyrase subunit A [Fusobacterium ulcerans ATCC 49185] gi|313690310|gb|EFS27145.1| DNA gyrase subunit A [Fusobacterium ulcerans ATCC 49185] Length = 834 Score = 422 bits (1085), Expect = e-115, Method: Compositional matrix adjust. Identities = 222/572 (38%), Positives = 360/572 (62%), Gaps = 23/572 (4%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 NV + ++E YL Y++S I RA+PD+RDG KPVHRRI+ AMSE+G+ + A+KKS Sbjct: 3 NVNNRYIEDEMKESYLDYSMSVIVSRALPDVRDGMKPVHRRILFAMSELGMTYDKAYKKS 62 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 ARIVGEV+GK HPHGD +VY ++VR+AQ F RY L+ G GNFG+IDGDSAAA RYTEAR Sbjct: 63 ARIVGEVLGKYHPHGDSAVYGTMVRMAQDFNYRYLLVDGHGNFGSIDGDSAAAMRYTEAR 122 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 M +++ ++ +D++ +DFR +++ EP V P+K PNLL NG +GIAVGMAT+IP HN Sbjct: 123 MAKISNELIDDIDKNTIDFRKNFDDSLDEPTVLPAKLPNLLLNGATGIAVGMATNIPPHN 182 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 + E+ + LALIDNPE++ L+EYI GPDFPTGGII + ++ I ++Y GRG RVR + Sbjct: 183 LGELIDGILALIDNPELTPLDLMEYIKGPDFPTGGII-DGQKGIRDAYMTGRGKVRVRGK 241 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLF 314 +EE G I++ EIPYQ+ KS LIE+IA+L+ KR+ + D+RDES +R+V+ Sbjct: 242 VEIEEQKNGKASIIIKEIPYQLNKSTLIERIADLVKDKRVTGITDLRDESDRHGIRVVIE 301 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K + +P+L++ ++ ++++ F + M L + P+V+ L IL E++ HR EV+ R Sbjct: 302 VK-KGEEPELILNKLYKYTELQNTFGIIMLAL-VNNAPRVLNLKEILHEYIKHRFEVVTR 359 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAI 431 R+ F + ++R IL+G IA NID II IIR ++ + +++ +++ ++ Q AI Sbjct: 360 RTKFDLDKAEKRAHILQGYRIALDNIDRIIEIIRGSSDGNQARELLIEKYAFSDVQARAI 419 Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491 L+++L+ L LE +I +E + + ++ +L+ + + I E+ +KE ++ + Sbjct: 420 LDMKLQRLTGLERGKIDAEYEEIEKYIAELREILSHDSKIYEIIKEELLYLKEKYNDN-- 477 Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSVDLSAL 543 R T E R + L + +I+ E + + ++N+G+++ + K +++ Sbjct: 478 ----RRTLIENERME--ILPEDLIKDENVILTLTNKGYVKRMEVSKYKAQKRGGKGVASQ 531 Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575 + E D ++ A D +++ + G+ + + Sbjct: 532 NTIEDDFVESIESASNLDTLMIFTNQGRVFNI 563 >gi|508471|gb|AAA74376.1| gyrase A [Helicobacter pylori] Length = 826 Score = 422 bits (1084), Expect = e-115, Method: Compositional matrix adjust. Identities = 245/610 (40%), Positives = 380/610 (62%), Gaps = 34/610 (5%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 +N+ V + ++EE YLAY++S I RA+PD RDG KPVHRRI++AM E+GL A+KK Sbjct: 10 KNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHELGLTSKVAYKK 69 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 SARIVG+VIGK HPHGD +VYD+LVR+AQ F R L+ GQGNFG+IDGD+AAA RYTEA Sbjct: 70 SARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDNAAAMRYTEA 129 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 RMT+ +E IL+ +D+D +DF Y++ EP + PS+ PNLL NG +GIAVGMATSIP H Sbjct: 130 RMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGIAVGMATSIPPH 189 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 + EI +A +++NP ++++LE++ GPDFPTGGII + I+E+Y+ GRG +VRA Sbjct: 190 RIDEIIDALAHVLENPNAELDEILEFVKGPDFPTGGIIY-GKAGIIEAYKTGRGRVKVRA 248 Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVL 313 + VE+ + IV+ E+P+Q K++L+E+I++L K+I + ++RDES E +R+V+ Sbjct: 249 KVHVEKT-KNKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRDESDREGIRVVI 307 Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373 K ++ ++++ ++ L+ MET F + + + + P++ L +L+ +L HR+ ++ Sbjct: 308 ELKRDAM-SEIVLNHLYKLTTMETTFSIILLAI-YNKEPKIFTLLELLRLFLNHRKTIII 365 Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVDA 430 RR+ F ++ R IL+G LIA NIDEI+ +I+ P K ++ RF+L+E Q A Sbjct: 366 RRTIFELEKAKARAHILEGYLIALDNIDEIVQLIKTSPSPEAAKNALMERFTLSEIQSKA 425 Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490 IL +RL+ L LE +IK E NLL + ++ +L S + + E+ EVKE FS Sbjct: 426 ILEMRLQRLTGLERDKIKEEYQNLLELIDDLNGILKSEDRLNGVVKTELLEVKEQFSSP- 484 Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSVD-------LS 541 RRT E+ + ++ + +I EP+ V +S +G+++ LK + LS Sbjct: 485 ----RRT---EIQESYESIDIEDLIANEPMVVSMSYKGYVKRVDLKVYEKQNRGGKGKLS 537 Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDL 596 + E D ++ A+T D +L ++ G K Y +P + ++ G+AI LI L Sbjct: 538 GSTY-EDDFIENFFVANTHDILLFITNKGQLYHLKVYKIPEASRIA---MGKAIVNLISL 593 Query: 597 NHNQDIVTAF 606 ++ I+ Sbjct: 594 APDEKIMATL 603 >gi|261822454|ref|YP_003260560.1| DNA gyrase subunit A [Pectobacterium wasabiae WPP163] gi|261606467|gb|ACX88953.1| DNA gyrase, A subunit [Pectobacterium wasabiae WPP163] Length = 879 Score = 422 bits (1084), Expect = e-115, Method: Compositional matrix adjust. Identities = 256/637 (40%), Positives = 372/637 (58%), Gaps = 62/637 (9%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + V++ L+ YL YA+S I RA+PD+RDG KPVHRR+++AMS +G D+ +KKSA Sbjct: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSVLGNDWNKPYKKSA 67 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD +VY+++VR+AQPF RY L+ GQGNFG+IDGDSAAA RYTE RM Sbjct: 68 RVVGDVIGKYHPHGDSAVYETIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRM 127 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 +++A +L ++++ VDF Y+ + P V P++ PNLL NG+SGIAVGMAT+IP HN+ Sbjct: 128 SKIAHELLADLEKETVDFVPNYDGTEQIPDVMPTRIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ LA ID+ +I++E L+E+I GPDFPT II R I E+YR GRG +RAR Sbjct: 188 TEVVNGCLAYIDDEDITLEGLMEHIKGPDFPTAAII-NGRRGIEEAYRTGRGKIYIRARG 246 Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314 VE + G I+V EIPYQV K+RLIEKIAEL+ KRI + +RDES +D +RIV+ Sbjct: 247 EVETDAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRIEGISALRDESDKDGMRIVIE 306 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K ++ ++++ +++ + ++T F +NM L G+ P++MPL IL ++ HRREV+ R Sbjct: 307 IKRDAVG-EVVLNNLYSQTQLQTSFGINMVALHQGQ-PKIMPLKDILVAFVRHRREVVTR 364 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS--------------- 419 R+ F ++ R IL+GL IA NID II +IR P S Sbjct: 365 RTIFELRKARDRAHILEGLAIALANIDPIIELIRRAASPAEAKASLIAQAWELGSVSTML 424 Query: 420 ----------------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457 + LTE Q AIL+LRL+ L +E ++ E +LLAE Sbjct: 425 ERAGDDAARPEWLEPEFGIRDGHYYLTEQQAQAILDLRLQKLTGMEHEKLLDEYKDLLAE 484 Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ-QAMIE 516 ++ +LNS ++ I E+ +K +S RRT A+ A + + +I Sbjct: 485 IAELLYILNSPERLMEVIREELEAIKTQYSDE-----RRTEIT----ANTADINIEDLIN 535 Query: 517 KEPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568 +E + V +S++G+++ + + SA KE D + L A+T D IL S+ Sbjct: 536 QEDVVVTLSHQGYVKYQPLSDYEAQRRGGRGKSAARIKEEDFIDRLLVANTHDTILCFSS 595 Query: 569 DGKAYTLPAGNLL-SGRG-HGEAIQLLIDLNHNQDIV 603 G+ Y + L + RG G I L+ L N+ I Sbjct: 596 RGRLYWMKVYQLPEASRGARGRPIVNLLPLEPNERIT 632 >gi|317120856|ref|YP_004100859.1| DNA gyrase subunit A [Thermaerobacter marianensis DSM 12885] gi|315590836|gb|ADU50132.1| DNA gyrase subunit A [Thermaerobacter marianensis DSM 12885] Length = 810 Score = 422 bits (1084), Expect = e-115, Method: Compositional matrix adjust. Identities = 242/619 (39%), Positives = 373/619 (60%), Gaps = 28/619 (4%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 V + +++ Y+ YA+S I RA+PD+RDG KPVHRRI++AM E G FKKSAR V Sbjct: 12 VDIEEEMKQSYIDYAMSVIVNRALPDVRDGLKPVHRRILYAMREGGNTPDKPFKKSARTV 71 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+V+GK HPHGD +VYD+LVR+AQ F RYPLI G GNFG+IDGD AA RYTEAR++ + Sbjct: 72 GDVLGKYHPHGDAAVYDALVRMAQDFSMRYPLIEGHGNFGSIDGDPPAAMRYTEARLSPL 131 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A +++ +D+D VDF ++E + EP V P++FPNLL NG +GIAVGMAT+IP HN++E Sbjct: 132 AMELMRDLDKDTVDFVPNFDETEQEPAVLPARFPNLLVNGAAGIAVGMATNIPPHNLREA 191 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 + + LID+P+ L++ I GPDFPTGGIIV RE I ++Y GRG +RA +E Sbjct: 192 IDGVIHLIDHPDAGDRDLMKVIKGPDFPTGGIIV-GREGIRQAYTTGRGIITIRAHAQIE 250 Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319 G IVVTEIPY+V KS++IEKIAEL+ +RI + D+RDE+ V+ R Sbjct: 251 TSASGKTRIVVTEIPYEVTKSKIIEKIAELVQERRIEGITDLRDETDRSGLRVVIELARG 310 Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379 +P++++ ++ + M+ + + + L G+ P+V+ L +L+ +L H+++V+ RR+ Sbjct: 311 ANPNVILNQLYKFTPMQVSYGIILLALVDGQ-PRVLTLKQLLRHYLDHQKDVILRRTRHD 369 Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAILNLRL 436 ++ + R IL+GL IA +ID +I +IR D+ + ++ FSLTE Q AIL++RL Sbjct: 370 LEKAEARAHILEGLRIALDHIDAVITLIRQSRTVDEARTGLMESFSLTEKQAQAILDMRL 429 Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496 + L LE +++ E LL E E + ++LNS K + I E+ E+++ F RR Sbjct: 430 QRLTGLEREKVEEEYQELLKEIEYLRAVLNSEKMVLDIIKQELAEIRDRFGDD-----RR 484 Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEG 548 T VS A ++ +I +E + + +++RG+I RS + ++ + +E Sbjct: 485 TKI--VSGAADFEVED-LIAEEDVVITLTHRGYIKRMPVNTYRSQRRGGRGVTGIQTREE 541 Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEAIQLLIDLNHNQDIVTAF 606 D + A T + +L + GK Y + +GR G A+ LI++ ++ VTA Sbjct: 542 DFVAQLFIATTHENLLFFTNRGKVYHRRVHEIPEAGRTARGTAVVNLIEIERDEQ-VTAV 600 Query: 607 V----YDSTCKLLVVSSKG 621 + + LL+ + +G Sbjct: 601 IPVRDFGEDRDLLMCTRRG 619 >gi|15790025|ref|NP_279849.1| DNA gyrase subunit A [Halobacterium sp. NRC-1] gi|169235748|ref|YP_001688948.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Halobacterium salinarum R1] gi|10580453|gb|AAG19329.1| DNA gyrase subunit A [Halobacterium sp. NRC-1] gi|167726814|emb|CAP13600.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Halobacterium salinarum R1] Length = 824 Score = 422 bits (1084), Expect = e-115, Method: Compositional matrix adjust. Identities = 236/614 (38%), Positives = 372/614 (60%), Gaps = 33/614 (5%) Query: 13 VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72 V + VK V + +E+ Y+ YA+S I RA+PD+RDG KPVHRRI++AM E G+ G+ Sbjct: 12 VADRVKNVRVDEEMEQSYIDYAMSVIAGRALPDVRDGLKPVHRRILYAMHESGVTSGSGH 71 Query: 73 KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132 +KS+ IVG+ +G HPHGD +YD+LVR+AQ F RYPL+ GQGNFG++DGD AAA RYT Sbjct: 72 RKSSNIVGDTMGDYHPHGDSPIYDALVRMAQDFSMRYPLVDGQGNFGSVDGDPAAAMRYT 131 Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192 EARM +AE +L +++D V F+ Y++ +EP V PS FPNLL NG+SGIAVGM+T++P Sbjct: 132 EARMAPIAEELLTDIEKDTVAFQANYDDRLTEPAVLPSSFPNLLVNGSSGIAVGMSTNVP 191 Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252 HN+ E+ +A + LID P+ ++ L+EY+ GPDFPT IV R + ++Y+ GRG R+ Sbjct: 192 PHNLGEVIDATIHLIDTPDCTVLDLMEYVKGPDFPTAANIV-GRADVKQAYQTGRGRVRM 250 Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRI 311 RA + VE GR IV+TE+PYQ KS L+E+IA+ + ++ + D+RDES + VRI Sbjct: 251 RAEYHVESNGR-RDSIVITELPYQQNKSTLVERIADDVRDGKLEGITDLRDESDRNGVRI 309 Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371 V+ K ++ + D++ E+ + S +E F + +N+ + P+V+ L +L E+++HR+EV Sbjct: 310 VIDLKQKA-NTDVV-ENRLLESHLEKTFSV-INLALVDGEPKVLTLKELLAEYVSHRKEV 366 Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQV 428 + RRS + + R IL G L A N DE++ +I+ + D K + S F +++Q Sbjct: 367 VRRRSEHDLGEAEDRAHILDGRLTALENADEVVELIQDAEDRDAAKETLKSAFDFSQDQA 426 Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488 D I+ ++L SL +E I+SE +++ A E+++ +L S ++ + I E+RE+K ++ Sbjct: 427 DHIVRMQLGSLTSMEAADIESEYEDVTARIERLEEILGSEQELLDVIKDELREIKTQYAD 486 Query: 489 STDLGRRRTTFCEVSRADKATL-QQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH--- 544 RRT+F E D T+ + +I +E VV+S +I+ + + + D A H Sbjct: 487 -----ERRTSFIE----DTGTVADEDLIPEEDTVVVLSEGDYIKRVPAETFD--AQHRGG 535 Query: 545 -------FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLID 595 K+GD + A T D +L + G+ Y L + +S G + ++D Sbjct: 536 KGIIGSDLKDGDRVSTVFTASTHDYLLCFTDQGQVYRLKVYQVPEMSRTARGTSAVNILD 595 Query: 596 LNHNQDIVTAFVYD 609 L+ ++I D Sbjct: 596 LDDGEEISAVVTAD 609 >gi|156975008|ref|YP_001445915.1| DNA gyrase subunit A [Vibrio harveyi ATCC BAA-1116] gi|156526602|gb|ABU71688.1| hypothetical protein VIBHAR_02730 [Vibrio harveyi ATCC BAA-1116] Length = 878 Score = 422 bits (1084), Expect = e-115, Method: Compositional matrix adjust. Identities = 269/725 (37%), Positives = 405/725 (55%), Gaps = 64/725 (8%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + V++ L YL YA+S I RA+PD+RDG KPVHRR++ AM+ +G D+ +KKSA Sbjct: 8 ITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSA 67 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG+IDGDSAAA RYTE RM Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVRM 127 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 ++A +L +D++ VD+ Y+ + P V P+K PNLL NG SGIAVGMAT+IP HN+ Sbjct: 128 AKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGASGIAVGMATNIPPHNL 187 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ + LA I+N EI+I++L++YI GPDFPT +I R+ IV++Y+ GRG +R++ Sbjct: 188 GEVIDGCLAFINNEEITIDQLMDYIPGPDFPTAALI-SGRKGIVDAYKTGRGKIYMRSKA 246 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFP 315 +E G I+VTEIPYQV K+RLIEKIAEL+ K++ + +RDES +D +RIV+ Sbjct: 247 EIEVEKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIEC 306 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 K R ++++ +++ + ++T F +NM L+ G+ PQ+ L +LK ++ HRREV+ RR Sbjct: 307 K-RDAVGEVVLNNLYAQTQLQTTFGINMVALNNGQ-PQLFNLKDMLKCFVDHRREVVTRR 364 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR------------ 420 + F ++ R IL+ L +A NIDE+I +I+N P K +VSR Sbjct: 365 TIFELRKARERAHILEALSLALANIDEVIELIKNAPTPAEAKVGLVSRGWDLGNVASMLE 424 Query: 421 ----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458 + LTE Q AIL LRL L LE +I E LL E Sbjct: 425 RAGTDAARPEWLEDQYGIRDGLYYLTETQAQAILELRLHRLTGLEHEKILDEYKALLDEI 484 Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518 ++ +L S ++ I E+ V++ + + RRT E++ A + +I +E Sbjct: 485 AELMHILASTERLMEVIREELEAVRDGYGDA-----RRT---EITAATHDIDMEELIARE 536 Query: 519 PITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570 + V +S+ G+++ + + SA K+ D ++ L A+T D IL ST G Sbjct: 537 DVVVTLSHEGYVKYQILSDYEAQRRGGKGKSATKMKDEDFIERLLVANTHDNILCFSTRG 596 Query: 571 KAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAFVYD--STCKLLVVSSKGNAFIV 626 K Y L L + G+ I ++ L + I D S K + +++ Sbjct: 597 KTYRLKVYQLPHATRTARGKPIVNILPLEEGERITAILPVDEFSPEKFIFMATGDGTVKK 656 Query: 627 EESEIIANTR-KGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR- 683 AN R G + + ++ + V GD + + + K++ FS D++ M R Sbjct: 657 TPLNQFANVRSNGLIAVNLRDDDSLIGVDITNGDSDIMLFSKAGKVVRFSEDKVRAMGRT 716 Query: 684 GKGVR 688 GVR Sbjct: 717 AAGVR 721 >gi|261253081|ref|ZP_05945654.1| DNA gyrase subunit A [Vibrio orientalis CIP 102891] gi|260936472|gb|EEX92461.1| DNA gyrase subunit A [Vibrio orientalis CIP 102891] Length = 874 Score = 422 bits (1084), Expect = e-115, Method: Compositional matrix adjust. Identities = 274/725 (37%), Positives = 408/725 (56%), Gaps = 64/725 (8%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + V++ L YL YA+S I RA+PD+RDG KPVHRR++ AM+ +G D+ +KKSA Sbjct: 8 ITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSA 67 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG+IDGDSAAA RYTE RM Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVRM 127 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 ++A +L +D++ VD+ Y+ + P V P+K PNLL NG SGIAVGMAT+IP HN+ Sbjct: 128 AKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGASGIAVGMATNIPPHNL 187 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ + LA IDN EI+I++L++YI GPDFPT +I R+ IV++Y+ GRG +R++ Sbjct: 188 GEVIDGCLAFIDNEEITIDELMDYIPGPDFPTAALI-SGRKGIVDAYKTGRGKIYMRSKA 246 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFP 315 +E G I+VTEIPYQV K+RLIEKIAEL+ K++ + +RDES +D +RIV+ Sbjct: 247 DIEVEKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIEC 306 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 K R ++++ +++ + ++T F +NM L+ G+ PQ+ L +LK ++ HRREV+ RR Sbjct: 307 K-RDAVGEVVLNNLYAQTQLQTTFGINMVALNNGQ-PQLFNLKDMLKCFVDHRREVVTRR 364 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR------------ 420 + F ++ R IL+ L +A NIDEII +IRN P K +V+R Sbjct: 365 TIFELKKARDRAHILEALALALANIDEIIELIRNAATPAEAKAGLVARGWDLGNVAAMLE 424 Query: 421 ----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458 + LTE Q AIL+LRL L LE +I E LL E Sbjct: 425 SAGTDAARPDWLEEQYGIRDGQYYLTETQAQAILDLRLHKLTGLEHEKILDEYKALLDEI 484 Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518 +++ +L S ++ I E+ V++ F RRT E++ A + +I +E Sbjct: 485 KELMHILASTERLMEVIREELETVRDAFGDV-----RRT---EITAASHDIDMEELIARE 536 Query: 519 PITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570 + V +S+ G+++ + + SA KE D ++ L A+T D IL ST G Sbjct: 537 DVVVTLSHEGYVKYQILSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILCFSTRG 596 Query: 571 KAYTLPAGNL-LSGR-GHGEAIQLLIDLNHNQDIVTAFVYD--STCKLLVVSSKGNAFIV 626 K Y L L L+ R G+ I ++ L + I D S K + +++ Sbjct: 597 KTYRLKVYQLPLASRTARGKPIVNILPLEEGERITAILPVDEFSEDKFIFMATGDGTVKK 656 Query: 627 EESEIIANTR-KGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR- 683 AN R G + + ++ + V GD + + + K++ F+ D++ M R Sbjct: 657 TPLTQFANVRANGLIAVNLRDDDSLIGVDITNGDSDIMLFSKAGKVVRFAEDKVRAMGRT 716 Query: 684 GKGVR 688 GVR Sbjct: 717 AAGVR 721 >gi|153835279|ref|ZP_01987946.1| DNA gyrase, A subunit [Vibrio harveyi HY01] gi|148868215|gb|EDL67361.1| DNA gyrase, A subunit [Vibrio harveyi HY01] Length = 879 Score = 422 bits (1084), Expect = e-115, Method: Compositional matrix adjust. Identities = 269/725 (37%), Positives = 405/725 (55%), Gaps = 64/725 (8%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + V++ L YL YA+S I RA+PD+RDG KPVHRR++ AM+ +G D+ +KKSA Sbjct: 8 ITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSA 67 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG+IDGDSAAA RYTE RM Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVRM 127 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 ++A +L +D++ VD+ Y+ + P V P+K PNLL NG SGIAVGMAT+IP HN+ Sbjct: 128 AKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGASGIAVGMATNIPPHNL 187 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ + LA I+N EI+I++L++YI GPDFPT +I R+ IV++Y+ GRG +R++ Sbjct: 188 GEVIDGCLAFINNEEITIDELMDYIPGPDFPTAALI-SGRKGIVDAYKTGRGKIYMRSKA 246 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFP 315 +E G I+VTEIPYQV K+RLIEKIAEL+ K++ + +RDES +D +RIV+ Sbjct: 247 EIEVEKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIEC 306 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 K R ++++ +++ + ++T F +NM L+ G+ PQ+ L +LK ++ HRREV+ RR Sbjct: 307 K-RDAVGEVVLNNLYAQTQLQTTFGINMVALNNGQ-PQLFNLKDMLKCFVDHRREVVTRR 364 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR------------ 420 + F ++ R IL+ L +A NIDE+I +I+N P K +VSR Sbjct: 365 TIFELRKARERAHILEALSLALANIDEVIELIKNAPTPAEAKVGLVSRGWDLGNVASMLE 424 Query: 421 ----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458 + LTE Q AIL LRL L LE +I E LL E Sbjct: 425 RAGTDAARPEWLEDQYGIRDGLYYLTETQAQAILELRLHRLTGLEHEKILDEYKALLDEI 484 Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518 ++ +L S ++ I E+ V++ + + RRT E++ A + +I +E Sbjct: 485 AELMHILASTERLMEVIREELEAVRDGYGDA-----RRT---EITAATHDIDMEELIARE 536 Query: 519 PITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570 + V +S+ G+++ + + SA K+ D ++ L A+T D IL ST G Sbjct: 537 DVVVTLSHEGYVKYQILSDYEAQRRGGKGKSATKMKDEDFIERLLVANTHDNILCFSTRG 596 Query: 571 KAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAFVYD--STCKLLVVSSKGNAFIV 626 K Y L L + G+ I ++ L + I D S K + +++ Sbjct: 597 KTYRLKVYQLPHATRTARGKPIVNILPLEEGERITAILPVDEFSPEKFIFMATGDGTVKK 656 Query: 627 EESEIIANTR-KGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR- 683 AN R G + + ++ + V GD + + + K++ FS D++ M R Sbjct: 657 TPLNQFANVRSNGLIAVNLRDDDSLIGVDITNGDSDIMLFSKAGKVVRFSEDKVRAMGRT 716 Query: 684 GKGVR 688 GVR Sbjct: 717 AAGVR 721 >gi|229083322|ref|ZP_04215683.1| DNA gyrase subunit A [Bacillus cereus Rock3-44] gi|228699988|gb|EEL52612.1| DNA gyrase subunit A [Bacillus cereus Rock3-44] Length = 795 Score = 422 bits (1084), Expect = e-115, Method: Compositional matrix adjust. Identities = 221/551 (40%), Positives = 354/551 (64%), Gaps = 22/551 (3%) Query: 35 LSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSV 94 +S I RA+PD+RDG KPVHRR+++AM+++G+ A+KKSARIVGEVIGK HPHGD +V Sbjct: 1 MSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITADKAYKKSARIVGEVIGKYHPHGDSAV 60 Query: 95 YDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDF 154 Y+++VR+AQ F QRY L+ G GNFG++DGDSAAA RYTEARM++++ +++ + ++ +D+ Sbjct: 61 YETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAAMRYTEARMSKISMELIRDITKNTIDY 120 Query: 155 RDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISI 214 +D Y+ + EP+V P++FPNLL NGT+GIAVGMAT+IP H + E+ + LAL NP+I+I Sbjct: 121 QDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMATNIPPHQLGEVIDGVLALSHNPDITI 180 Query: 215 EKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIP 274 +L+E I GPDFPT G+I+ R I +Y GRG +RA+ +EE G I+VTE+P Sbjct: 181 AELMECIPGPDFPTAGLIL-GRSGIRRAYETGRGSIILRAKVEIEEKPNGKQTIIVTELP 239 Query: 275 YQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSD 334 YQV K+RLIEKIAEL+ K+I + D+RDES + ++ R + ++L+ +++ + Sbjct: 240 YQVNKARLIEKIAELVRDKKIEGITDLRDESDRNGMRIVMEVRRDANANVLLNNLYKHTA 299 Query: 335 METRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLL 394 ++T F +NM L G PQV+ L L +L H++ V+ RR+++ ++ + R IL+GL Sbjct: 300 LQTSFGINMLSLVNGE-PQVLNLKQNLYHYLEHQKVVIRRRTAYELEKAEARAHILEGLR 358 Query: 395 IAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451 IA ++DE+I +IR+ D + ++ RF L+E Q AIL++RL+ L LE +I+ E Sbjct: 359 IALDHLDEVITLIRSSKTADIARQGLMERFGLSEKQAQAILDMRLQRLTGLEREKIEQEY 418 Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511 +L+ ++ ++L ++ I E+ EVKE F+ +RRT E++ +++ Sbjct: 419 QDLMKLIAELKAILADEEKVLEIIREELTEVKERFND-----KRRT---EITIGGMESIE 470 Query: 512 -QAMIEKEPITVVISNRGWIRSLKSHSVD--------LSALHFKEGDSLKIALHAHTTDR 562 + +I ++ I + +++ G+I+ L + + + + + D ++ L T D Sbjct: 471 DEDLIPEQNIAITLTHNGYIKRLPASTYKTQNRGGRGVQGMGTNDDDFVEQLLTTSTHDH 530 Query: 563 ILLLSTDGKAY 573 IL + GK Y Sbjct: 531 ILFFTNKGKVY 541 >gi|82749783|ref|YP_415524.1| DNA gyrase subunit A [Staphylococcus aureus RF122] gi|82655314|emb|CAI79694.1| DNA gyrase subunit A [Staphylococcus aureus RF122] Length = 886 Score = 421 bits (1083), Expect = e-115, Method: Compositional matrix adjust. Identities = 241/614 (39%), Positives = 375/614 (61%), Gaps = 30/614 (4%) Query: 26 LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85 + E +L YA+S I RA+PD+RDG KPVHRRI++ ++E G+ ++KKSARIVG+V+GK Sbjct: 18 MRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDKSYKKSARIVGDVMGK 77 Query: 86 LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145 HPHGD S+Y+++VR+AQ F RYPL+ GQGNFG++DGD AAA RYTEARMT++ +L+ Sbjct: 78 YHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEARMTKITLELLR 137 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 +++D +DF D Y+ + EP V P++FPNLLANG SGIAVGMAT+IP HN+ E+ L+ Sbjct: 138 DINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATNIPPHNLTELINGVLS 197 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265 L NP+ISI +L+E I GPDFPT G+I+ + I +Y GRG ++R+R +EE G Sbjct: 198 LSKNPDISIAELMEDIEGPDFPTAGLIL-GKSGIRRAYETGRGSIQMRSRAVIEERGGRR 256 Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA--EDVRIVLFPKNRSLDPD 323 IVVTEIP+QV K+R+IEKIAEL+ K+I + D+RDE++ VR+V+ + + + Sbjct: 257 QRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRVVIDVR-KDANAS 315 Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383 +++ +++ + ++T F +NM L GR P+++ L L +L H++ V+ RR+ + ++ Sbjct: 316 VILNNLYKQTPLQTSFGVNMIALVNGR-PKLINLKEALVHYLEHQKTVVRRRTQYNLRKA 374 Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVDAILNLRLRSLR 440 R IL+GL IA +IDEII+ IR D K M S RF L+E Q AIL++RLR L Sbjct: 375 KDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQRFKLSEKQAQAILDMRLRRLT 434 Query: 441 KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500 LE +I++E + LL +++++L + + E+ E+++ F RRT Sbjct: 435 GLERDKIEAEYNELLNYISELEAILADEEVLLQLVRDELTEIRDRFGDE-----RRT--- 486 Query: 501 EVSRADKATLQ-QAMIEKEPITVVISNRGWIRSLKSHSV--------DLSALHFKEGDSL 551 E+ L+ + +I +E I + +S+ +I+ L + + ++ E D + Sbjct: 487 EIQLGGFEDLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRAQNRGGRGVQGMNTLEEDFV 546 Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAFV-- 607 + T D +L + G+ Y L + LS + G + I+L +++ I T Sbjct: 547 SQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIELENDEVISTMIAVK 606 Query: 608 -YDSTCKLLVVSSK 620 +S LV ++K Sbjct: 607 DLESEDNFLVFATK 620 >gi|90581243|ref|ZP_01237041.1| putative DNA topoisomerase (ATP-hydrolyzing) [Vibrio angustum S14] gi|90437614|gb|EAS62807.1| putative DNA topoisomerase (ATP-hydrolyzing) [Vibrio angustum S14] Length = 887 Score = 421 bits (1083), Expect = e-115, Method: Compositional matrix adjust. Identities = 264/691 (38%), Positives = 392/691 (56%), Gaps = 77/691 (11%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + +++ L+ YL YA+S I RA+PD+RDG KPVHRR++ AM+ +G D+ A+KKSA Sbjct: 8 ITPINIEDELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKKSA 67 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG+IDGDSAAA RYTE RM Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVRM 127 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 +++A +L +D++ VD+ Y+ + P V P+K PNLL NG+SGIAVGMAT+IP HN+ Sbjct: 128 SKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ LA I++ +I+I++L+EYI GPDFPT +I R+ IV++Y+ GRG +RA+ Sbjct: 188 GEVINGCLAYINDEDITIDQLMEYIPGPDFPTAALI-SGRKGIVDAYKTGRGKVYMRAKA 246 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFP 315 +E G IVV EIPYQV K+RLIEKIAEL+ K++ + +RDES +D +RIV+ Sbjct: 247 EIEVEKNGKETIVVHEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIEC 306 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 K R ++++ +++ + ++T F +NM L G+ P++ L +LK ++ HRREV+ RR Sbjct: 307 K-RDAVGEVVLNNLYAQTQLQTTFGINMVALDNGQ-PKIFNLKEMLKCFVNHRREVVTRR 364 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR------------ 420 + + ++ R IL+GL +A NIDEII +IR P K +++R Sbjct: 365 TIYELRKARDRAHILEGLALALANIDEIIELIRRAPTPAEAKAGLIARGWDLGNVAAMLE 424 Query: 421 ----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458 + LTE Q AIL+LRL L LE +I E LL E Sbjct: 425 RAGTDAARPEWLEEQFGIRDNQYYLTEQQAQAILDLRLHKLTGLEHEKILEEYKALLDEI 484 Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518 ++ +L+S ++ I E+ VKE F+ RRT E++ A + +I +E Sbjct: 485 AELMYILSSSERLMEVIREELELVKEQFNDE-----RRT---EITAASHDIDMEDLITQE 536 Query: 519 PITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570 + V +S+ G+++ + + +A KE D ++ L A+T D IL S+ G Sbjct: 537 DVVVTLSHEGYVKYQVLSDYEAQRRGGKGKAATRMKEEDFIERLLVANTHDTILCFSSRG 596 Query: 571 -----KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVT----------AFVYDSTCKLL 615 K Y LP L S G+ I ++ L N+ I FV+ +T Sbjct: 597 RMYWLKVYQLP---LASRTARGKPIVNILPLEENERITAILPVREYTEDKFVFMATADGT 653 Query: 616 VVSSKGNAFIVEESE--IIANTRKGKTFLKV 644 V + F S I N R+G + + V Sbjct: 654 VKKTPLTDFSRPRSAGIIAVNLREGDSLIGV 684 >gi|21672982|ref|NP_661047.1| DNA gyrase subunit A [Chlorobium tepidum TLS] gi|21646043|gb|AAM71389.1| DNA gyrase subunit A [Chlorobium tepidum TLS] Length = 826 Score = 421 bits (1083), Expect = e-115, Method: Compositional matrix adjust. Identities = 250/629 (39%), Positives = 371/629 (58%), Gaps = 40/629 (6%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 E + +S+ + + YL Y++S I RA+PD+RDG KPVHRR+++ M E+GL G +KK Sbjct: 4 EKILPISIEEEMRDSYLDYSMSVIVSRALPDVRDGLKPVHRRVLYGMHELGLQAGKPYKK 63 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 SAR+VGEV+GK HPHGD +VYDSLVR+ Q F RYPLI GQGNFG++DGDS AA RYTE Sbjct: 64 SARVVGEVLGKYHPHGDSAVYDSLVRMVQDFSLRYPLIDGQGNFGSVDGDSPAAMRYTEV 123 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 RM +A +L+ +D++ VDF +++ EP V P+ PNLL NG SGIAVGMAT+IP H Sbjct: 124 RMKAIAGEMLKDLDKETVDFSLNFDDSLEEPTVLPAAIPNLLVNGASGIAVGMATNIPPH 183 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 N++E+ +ALI+NPEI I L++++ PDFPTGGII E + ++Y GRG +RA Sbjct: 184 NMREVVSGLIALIENPEIEIGDLMKHVTAPDFPTGGIIY-GYEGVRQAYLTGRGKVVIRA 242 Query: 255 RWCVEEVGR-GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIV 312 R VE + G I+VTE+PYQV K RLIEKI EL+ K++ + DIRDES E +R+V Sbjct: 243 RAVVEVTQKNGRESIIVTELPYQVNKVRLIEKIVELVHDKKVEGIADIRDESDREGMRLV 302 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 + K R +++ +++ + M+ F + M L G VP+V+ L +++ ++ HR E++ Sbjct: 303 IELK-RDAVAKVVLNNLYKHTPMQDTFGVIMLALVDG-VPRVLNLKEMMQYYIRHRNEIV 360 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE-DKP--KPVMVSRFSLTENQVD 429 RR+ + + A ++R IL+GL I N+DE+I+ IR D P + ++ RF LTE Q Sbjct: 361 LRRTQYDLNAAEKRAHILEGLKICLDNLDEVISTIRQSPDTPAAQSRLMDRFGLTEAQSK 420 Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489 AIL +RL+ L +E +I E LA E++ S+L S +Q I E+ +V +++ Sbjct: 421 AILEMRLQRLTGMERQKIDDEYRETLALIEELKSILESPAKQMEIIKAELLKVSDVY--- 477 Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL------KSH--SVDLS 541 G R T D + + MI +E + + I++ G+I+ + H ++ Sbjct: 478 ---GDERRTELRPQEGDFSI--EDMIAQEDVVITITHEGFIKRFPVSGYRRQHRGGRGVA 532 Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLP-AGNLLSGRG--------HG 587 K D ++ A T + IL +T G K Y +P AG GR G Sbjct: 533 GAQAKNEDFIEHMFIASTHNYILFFTTAGRCYWLKVYEIPEAGRAARGRSLANIMELPPG 592 Query: 588 EAIQLLIDLNHNQDIVTAFVYDSTCKLLV 616 E I+ I++ + D F+ +T K +V Sbjct: 593 EKIRTYINVRNFDD--PHFIIMATAKGIV 619 >gi|302035398|ref|YP_003795720.1| DNA gyrase subunit A [Candidatus Nitrospira defluvii] gi|300603462|emb|CBK39792.1| DNA gyrase, subunit A [Candidatus Nitrospira defluvii] Length = 820 Score = 421 bits (1083), Expect = e-115, Method: Compositional matrix adjust. Identities = 262/698 (37%), Positives = 405/698 (58%), Gaps = 37/698 (5%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 +E + +++ + YL YA+S I RA+PD+RDG KPVHRRI+H M+EMGL ++ Sbjct: 4 DERLGQIAIEDEMRSSYLDYAMSVIVGRALPDVRDGLKPVHRRILHGMNEMGLAANRPYR 63 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSA+IVGE++G HPHGD ++YD+LVR+AQ F RY L+ GQGN+G++DGD+AAA RYTE Sbjct: 64 KSAKIVGEIMGNYHPHGDSAIYDTLVRMAQNFNMRYMLVDGQGNYGSMDGDAAAAMRYTE 123 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 AR+T++AE +L ++++ VDF Y+E EP+V PS+ PNLL NG GIAVG AT+IP+ Sbjct: 124 ARLTKLAEELLADIEKETVDFGPNYDESRVEPLVLPSRVPNLLVNGAGGIAVGYATNIPT 183 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E+ E L L++NPE++I +L++ I GPDFPT G I + I ++Y GRG VR Sbjct: 184 HNLGEVIEGLLLLLENPEVTIAQLMKKIPGPDFPTAGFIYGT-SGIKDAYETGRGLLTVR 242 Query: 254 ARWCVEEVGRGSW-CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRI 311 A+ +E R +++TEIPYQV KS+LIEKIA+L R+ + DIRDES E VR+ Sbjct: 243 AKVAIETDERTDRERLIITEIPYQVNKSKLIEKIADLAQEDRVTGISDIRDESDREGVRV 302 Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371 V+ K + P +++ +++ S ++T F +NM L R P+V+ L IL+ ++ HRREV Sbjct: 303 VIELKRNEI-PLVVLNNLYKHSQLQTTFGVNMLALVNNR-PEVLNLKRILEAFVEHRREV 360 Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQV 428 + RR+++ ++ + R IL+GL IA N+D +IA+IR P + ++ +F L+E Q Sbjct: 361 VVRRTAYDLRKAEERAHILEGLKIALDNLDAVIALIRRSQSPDVARTGLMQQFRLSEIQA 420 Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488 +AIL +RL+ L +LE ++ E +L E + S+L S I E+ E+KE + Sbjct: 421 NAILEMRLQRLTQLERDKLVEEYREVLKTIEYLRSVLGSEALVRKIIRDELTEIKEKYQD 480 Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS------- 541 RRT V + TL+ +I +E + V IS+ G+I K ++V L Sbjct: 481 E-----RRTKI--VKEEAELTLED-LIAEEEVVVTISHAGYI---KRNAVTLYRAQRRGG 529 Query: 542 ----ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLID 595 A+ KE D ++ A T D +L + GK Y L + S G+A+ L+ Sbjct: 530 KGKIAMGIKEEDFVETLFTASTHDSLLFFTDAGKVYWLKVHEIPEASRAAKGKALVNLLA 589 Query: 596 LNHNQDIVTAFVYDS--TCKLLVVSSKGNAFIVEESEIIANTRKGKTF-LKVSSEEKMKL 652 L+ ++ + + +++ +K E +N R+G L + + +K+ Sbjct: 590 LSKDEKVTATLPVKEYRADRFVIMGTKQGVIKKTELSAYSNPRQGGIIALSLDAGDKLIG 649 Query: 653 VVKVTGDHVAVVGENRKLLI-FSIDQIPEMSR-GKGVR 688 V G ++G + + I F + + M R GVR Sbjct: 650 VDLTDGQREILLGTKQGITIRFKEEDVRAMGRTAHGVR 687 >gi|310657322|ref|YP_003935043.1| DNA gyrase subunit a [Clostridium sticklandii DSM 519] gi|308824100|emb|CBH20138.1| DNA gyrase (type II topoisomerase), subunit A [Clostridium sticklandii] Length = 817 Score = 421 bits (1083), Expect = e-115, Method: Compositional matrix adjust. Identities = 257/683 (37%), Positives = 408/683 (59%), Gaps = 32/683 (4%) Query: 26 LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85 + + Y+ YA+S I RA+PD+RDG KPVHRRI+ AM+++GL +++KSA +VG+V+GK Sbjct: 21 MRKSYIDYAMSVIVGRALPDVRDGLKPVHRRILFAMNDLGLVPEKSYRKSATVVGDVLGK 80 Query: 86 LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145 HPHGD +VYD++V+LAQ F RYPL++G GNFG+IDGDSAAA RYTEA+M ++ +L+ Sbjct: 81 YHPHGDTAVYDAMVKLAQDFSTRYPLVNGHGNFGSIDGDSAAAMRYTEAKMQKLTLELLK 140 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 +D++ VDF Y+E EP V P+++PNLL NG++GIAVGMATSIP HN++E+ +A + Sbjct: 141 DIDKETVDFTLNYDERLKEPSVLPARYPNLLVNGSNGIAVGMATSIPPHNLREVIDAVVE 200 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265 LIDN E ++E ++++I GPDFPTG I+ + SI ++Y GRG VR++ +EE+ G Sbjct: 201 LIDNEEATVEDMMKHIKGPDFPTGATIM-GKGSIRDAYMTGRGKVTVRSKADIEELPNGK 259 Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKNRSLDPDL 324 I+VTEIPYQV K+R+IEKIA+L+ KRI + D+RDES D +RIV+ + R ++P++ Sbjct: 260 SQIIVTEIPYQVNKARMIEKIADLVKDKRIEGITDLRDESNRDGIRIVIEVR-RDVNPNI 318 Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384 ++ +++ S ++ F + M L G P+V+ + +L +L H++ V+ RR+ + ++ Sbjct: 319 VLNNLYKHSQLQDVFSIIMLSLVNGE-PKVLNIRDMLVHYLNHQKNVVRRRTEYDLRKAK 377 Query: 385 RRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAILNLRLRSLRK 441 R IL+GL+IA NID +I IIR D K + F L++ Q AIL++RL+ L Sbjct: 378 ERAHILEGLIIALDNIDRVIKIIRGSDNGSIAKEKLTEEFGLSDIQSQAILDMRLQRLTG 437 Query: 442 LEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCE 501 LE +I+ E L+ +S+L I E+ +++E K D +RRT E Sbjct: 438 LERGKIEEEFAELMKNIAYYESILQDQSILLGIIKDEMLKIRE---KHGD--KRRTEITE 492 Query: 502 VSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD--------LSALHFKEGDSLKI 553 AD+ + I E +TV ++ G+I+ + + ++++ ++ D ++ Sbjct: 493 A--ADEINILDT-IPDEEVTVTFTHYGYIKRIPMDTYKAQRRGGKGITSMTTRDDDFVEK 549 Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNL-LSGR-GHGEAIQLLIDLNHNQDIVTAFV---- 607 L IL L+ G+ Y L A + SGR G I LI L N+ VT+F+ Sbjct: 550 LLLTTNHSLILFLTNRGRIYRLNAYEIPQSGRIAKGTNIVNLIPLEKNEK-VTSFISIRD 608 Query: 608 YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGEN 667 + L++ + KG + SE +TR G + + ++++ V G+ ++ Sbjct: 609 VPAENYLVMCTKKGVIKKTQISEFRKSTRNGLIAISLREDDELINVKTTDGEQDFIIVTK 668 Query: 668 RKLLI-FSIDQIPEMSRGK-GVR 688 + + I F Q+ +M R GVR Sbjct: 669 KGMAISFDEKQVRDMGRAAMGVR 691 >gi|260459145|ref|ZP_05807400.1| DNA gyrase, A subunit [Mesorhizobium opportunistum WSM2075] gi|259034699|gb|EEW35955.1| DNA gyrase, A subunit [Mesorhizobium opportunistum WSM2075] Length = 933 Score = 421 bits (1083), Expect = e-115, Method: Compositional matrix adjust. Identities = 257/712 (36%), Positives = 395/712 (55%), Gaps = 63/712 (8%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 ++ +S+ ++ YL+YA+S I RA+PD+RDG KPVHRRI++A E G + + KSA Sbjct: 17 IEPISIIEEMQSSYLSYAMSVIVSRALPDVRDGLKPVHRRILYAAHESGYHWNRKYVKSA 76 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R V +V+GK HPHGD S+YD+LVR+AQ + R PLI GQGNFG+IDGD AA RYTE+R+ Sbjct: 77 RPVADVMGKYHPHGDASIYDALVRMAQDWSLRVPLIDGQGNFGSIDGDPPAAMRYTESRL 136 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 T+VA +L+ +D++ VDF+DTY+ D+EP V P++FPNLL NG+ GIAVGMAT+IP HN+ Sbjct: 137 TKVAHELLEDIDKETVDFQDTYDASDTEPKVLPARFPNLLVNGSGGIAVGMATNIPPHNL 196 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+C A+A+IDNP I + L+E I GPDFPTGGI++ R I +Y GRG +R + Sbjct: 197 SEVCNGAIAIIDNPAIDLPALMEIIPGPDFPTGGIVL-GRSGIYSAYATGRGSIVMRGKV 255 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316 +E+ G I++TE+PYQV K+ +IEK+AEL+ KRI + DIRDES V+ Sbjct: 256 NIEQRGNDRESIIITEVPYQVNKASMIEKMAELVRDKRIEGISDIRDESDRQGYRVVIEL 315 Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376 R D+++ ++ + ++T F NM L+ G+ P+VM L +L+ +++ R EV+ RR+ Sbjct: 316 KRDAVADVILNQLYRFTPLQTSFGANMVALNGGK-PEVMNLTDMLRAFVSFREEVITRRT 374 Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP----VMVSR------------ 420 F ++ R +L GL IA NIDE+I +IR P+ +M R Sbjct: 375 KFLLRKARDRAHVLVGLAIAVANIDEVIKLIRTAPDPQTAREQLMERRWPSGDVESLILL 434 Query: 421 -------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467 ++L+E Q AIL LRL+ L L +I EL+ + AE +L+S Sbjct: 435 IDDPRHRINEDGTYNLSEEQARAILELRLQRLTALGRDEIADELNTIGAEIIDYLDILSS 494 Query: 468 GKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNR 527 + + E+ V++ F RRT E++ + +I++E + V +S+ Sbjct: 495 RARVQQIVKDELAAVRDEFGTP-----RRT---ELTDGGADMEDEDLIQREDMVVTVSHS 546 Query: 528 GWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYT 574 G+I R+ + S + KE D + A+T +L S+ G K + Sbjct: 547 GYIKRVPLSLYRAQRRGGKGRSGMSTKEEDFVTRLFVANTHTPVLFFSSRGIVYKEKVWR 606 Query: 575 LPAGNLLSGRGHGEAIQLLIDLNHNQDIVT--AFVYDSTC----KLLVVSSKGNAFIVEE 628 LP GN S G+A+ ++ L + I T D T ++ +++G + Sbjct: 607 LPIGNPQS---RGKALINMLPLEQGERITTIMPLPEDETSWGELDVMFATTRGTVRRNKL 663 Query: 629 SEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH--VAVVGENRKLLIFSIDQI 678 S+ + R GK +K+ E L V+ D+ V + + + + FS+ + Sbjct: 664 SDFVQVNRNGKIAMKLEEEGDEILGVETCTDNDDVLLTANSGQCIRFSVGDV 715 >gi|149911239|ref|ZP_01899862.1| DNA gyrase, subunit A, type II topoisomerase [Moritella sp. PE36] gi|149805693|gb|EDM65692.1| DNA gyrase, subunit A, type II topoisomerase [Moritella sp. PE36] Length = 960 Score = 421 bits (1083), Expect = e-115, Method: Compositional matrix adjust. Identities = 253/637 (39%), Positives = 367/637 (57%), Gaps = 63/637 (9%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + +++ L+ YL YA+S I RA+PD+RDG KPVHRR++ AM+E+ D+ +KKSA Sbjct: 8 ITPINIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELKNDWNKPYKKSA 67 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD +VYD++VR+AQPF RY LI GQGNFG++DGDSAAA RYTE RM Sbjct: 68 RVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLIDGQGNFGSVDGDSAAAMRYTEIRM 127 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 +++A +L +D++ VDF Y+ + P V P++ PNLL NG+SGIAVGMAT+IP HN+ Sbjct: 128 SKIAHELLADLDKETVDFVPNYDGTEFIPEVMPTRIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ A LALI NP++S+E+++EYI GPDFPT GII + I ++YR GRG +RAR Sbjct: 188 NEVINACLALIQNPDLSLEEIMEYIPGPDFPTYGII-NGKAGIEQAYRTGRGKVHIRARA 246 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316 +E RG IVV E+PYQV K+RLIE+IAE + K+I + +RDES +D ++ Sbjct: 247 YIETNDRGRETIVVHELPYQVNKARLIERIAEFVKDKKIEGISALRDESDKDGMRMVVEV 306 Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376 R ++++ +++ + M+ F +NM L + + P++ L +L +L HRREV+ RR+ Sbjct: 307 KRDAVGEVVLNNLYAQTQMQVVFGINMVAL-IDKQPKIFTLKEMLDAFLRHRREVVTRRT 365 Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSR------------- 420 F ++ R IL+ L IA NIDEIIA+I+ + K ++SR Sbjct: 366 VFELRKARERAHILESLAIALANIDEIIALIKQSATSAEAKQALISRGWQLGDVATMLER 425 Query: 421 ---------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKE 459 + LTE Q AIL+LRL L LE +I SE LL Sbjct: 426 AGDDAARPEWLEAEYGIREGSYFLTEIQAQAILDLRLHKLTGLEHEKILSEYKELLDVIA 485 Query: 460 KIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEP 519 ++ +LN+ + I E++ K+ F G R T S AD + +IE+E Sbjct: 486 ELLYILNTPSRLLEVITEELQASKDAF------GDERRTEISASSADINL--EDLIERED 537 Query: 520 ITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG- 570 + V +S+ G+++ + + SA KE D ++ L A+T D IL S+ G Sbjct: 538 VVVTLSHEGYVKYQPITDYEAQRRGGKGKSATKMKEEDFIERLLVANTHDHILCFSSRGR 597 Query: 571 ----KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIV 603 K Y LP L S + G+ I L+ L + I Sbjct: 598 LYWMKVYQLP---LASRQARGKPIVNLLPLQDGERIT 631 >gi|225010734|ref|ZP_03701203.1| DNA gyrase, A subunit [Flavobacteria bacterium MS024-3C] gi|225005105|gb|EEG43058.1| DNA gyrase, A subunit [Flavobacteria bacterium MS024-3C] Length = 850 Score = 421 bits (1082), Expect = e-115, Method: Compositional matrix adjust. Identities = 232/598 (38%), Positives = 368/598 (61%), Gaps = 31/598 (5%) Query: 26 LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85 ++ Y+ Y++S I RA+PD+RDG KPVHRR++ M E+G+ A KKSARIVGEV+GK Sbjct: 16 MKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLFGMHELGVRATGAHKKSARIVGEVLGK 75 Query: 86 LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145 HPHGD SVYD++VR+AQ + RY L+ GQGNFG+IDGDS AA RYTEARM ++A+ +L Sbjct: 76 YHPHGDTSVYDTMVRMAQEWSLRYMLVDGQGNFGSIDGDSPAAMRYTEARMRKIADDMLI 135 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 +D+D VD + +++ EP V P++ PNLL NG SGIAVGMAT++P HN+ E+ + +A Sbjct: 136 DIDKDTVDHQLNFDDTLEEPKVLPTRIPNLLVNGASGIAVGMATNMPPHNLSEVVDGTIA 195 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265 I+NP I I++L+ +I PDFPTGG+I E + E++ GRG VRA+ +EEV +G Sbjct: 196 YIENPNIEIDELITHIKAPDFPTGGVIF-GYEGVKEAFHTGRGRVVVRAKAIIEEV-QGK 253 Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325 CI+VTEIPYQV K+ +I+K A+L+ K+I + IRDES + +++ R P+++ Sbjct: 254 ECIIVTEIPYQVNKADMIKKTADLVNDKKIEGISTIRDESDRNGMRIVYILKRDAIPNIV 313 Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385 + +++ + +++ F +N L GR PQ + + ++ ++ HR EV+ RR+ F ++ + Sbjct: 314 LNTLYKYTSLQSSFSVNNIALVNGR-PQQLNVKEMIHYFVEHRHEVVVRRTKFELKKAED 372 Query: 386 RVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKL 442 R IL+GL+IA NIDE+I +IR + D+ + ++ RF L+E Q AI+ +RLR L L Sbjct: 373 RAHILEGLIIASDNIDEVIKLIRASSSPDEARESLMERFKLSEIQAKAIVEMRLRQLTGL 432 Query: 443 EEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEV 502 E+ ++++E ++++A + +L +++ + I E++EVK + + RR+ E+ Sbjct: 433 EQDKLRTEYNDIIATIADLKDILGDKERRMSIIKEELQEVKTKYGDA-----RRS---EI 484 Query: 503 SRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIA 554 + A + + MI E + + IS+ G+I ++ V A + D L+ Sbjct: 485 NYAGGSLSIEDMIPDEQVVITISHAGYIKRTALSEYKTQNRGGVGQKASATRNEDFLEHL 544 Query: 555 LHAHTTDRILLLSTDGKA-----YTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV 607 +L + GK Y +P G+ S G AIQ LI+++ +D V AF+ Sbjct: 545 FVGTNHQYMLFFTQSGKCFWMRVYEIPEGSRTS---KGRAIQNLINISQ-EDKVKAFI 598 >gi|257871394|ref|ZP_05651047.1| DNA gyrase subunit A [Enterococcus gallinarum EG2] gi|257805558|gb|EEV34380.1| DNA gyrase subunit A [Enterococcus gallinarum EG2] Length = 825 Score = 421 bits (1082), Expect = e-115, Method: Compositional matrix adjust. Identities = 227/572 (39%), Positives = 358/572 (62%), Gaps = 22/572 (3%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 ++N+ V+L + E ++ YA+S I RA+PD+RDG KPVHRRI++ M+E+G+ K Sbjct: 5 KQNIHDVNLTSEMRESFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHK 64 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSARIVG+V+GK HPHGD ++Y+S+VR+AQPF RY L+ G GNFG++DGD AAA RYTE Sbjct: 65 KSARIVGDVMGKYHPHGDIAIYESMVRMAQPFSYRYMLVDGHGNFGSVDGDGAAAMRYTE 124 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 ARM+++A +L+ +++D VDF+ Y++ + EP V P++FPNLL NGT+GIAVGMAT+IP Sbjct: 125 ARMSKLAMEMLRDINKDTVDFQSNYDDTEREPAVLPARFPNLLVNGTTGIAVGMATNIPP 184 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E+ A L++NPE++ +L+E + GPDFPTGG+++ + I +Y G+G VR Sbjct: 185 HNLNEVIAAIELLMENPEVTTNELMEVLPGPDFPTGGLVM-GKSGIRRAYETGKGSITVR 243 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312 + V E+ G I+VTE+PY V K++LIE+I+EL KRI + D+RDES+ E +RIV Sbjct: 244 GKVEVTEMPNGKERILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMRIV 303 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 + + R + +++ +++ ++ +++ F NM + G VP+++ L IL+ ++ H++EV+ Sbjct: 304 IDVR-RDVSASVILNNLYKMTALQSSFGFNMLAIEKG-VPKILSLKRILENYIEHQQEVV 361 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVD 429 RR+ F + R IL+GL IA +IDEIIA+IR ++D+ K M+ RFSL++ Q Sbjct: 362 TRRTQFDKNKAEARAHILEGLRIALDHIDEIIALIRASNSDDEAKNTMMERFSLSDRQAQ 421 Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489 AIL++RLR L LE +I++E +LL + +L + ++ I E++E+ + F Sbjct: 422 AILDMRLRRLTGLERDKIENEYQSLLELIADLKDILANPQRVLEIIQTELQELGQRFGDE 481 Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLS 541 RRT E+ IT ++N G+I R+ + + Sbjct: 482 -----RRTELLVGEVLSLEDEDLIEEEEIVIT--LTNNGYIKRVANSEFRAQRRGGRGVQ 534 Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573 + + D +K + T D +L + GK Y Sbjct: 535 GMGIHDEDFVKTLISCSTHDTLLFFTNMGKVY 566 >gi|325567636|ref|ZP_08144303.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Enterococcus casseliflavus ATCC 12755] gi|325159069|gb|EGC71215.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Enterococcus casseliflavus ATCC 12755] Length = 841 Score = 421 bits (1082), Expect = e-115, Method: Compositional matrix adjust. Identities = 227/572 (39%), Positives = 356/572 (62%), Gaps = 22/572 (3%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 ++N+ V+L + E ++ YA+S I RA+PD+RDG KPVHRRI++ M+E+G+ K Sbjct: 6 KQNIHDVNLTSEMRESFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHK 65 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSARIVG+V+GK HPHGD ++Y+S+VR+AQPF RY L+ G GNFG++DGD AAA RYTE Sbjct: 66 KSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRYMLVDGHGNFGSVDGDGAAAMRYTE 125 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 ARM+++A +L+ +++D VDF+ Y++ + EP V P++FPNLL NGT+GIAVGMAT+IP Sbjct: 126 ARMSKLAMEMLRDINKDTVDFQSNYDDTEREPAVLPARFPNLLVNGTTGIAVGMATNIPP 185 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E+ A L++NPE++ +L+E + GPDFPTGGI++ + I +Y G+G VR Sbjct: 186 HNLNEVIAAIDLLMENPEVTTSELMEVLPGPDFPTGGIVM-GKSGIRRAYETGKGSITVR 244 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312 + V E+ G I+VTE+PY V K++LIE+I+EL KRI + D+RDES+ E +RIV Sbjct: 245 GKVEVTEMPNGKERILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMRIV 304 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 + + R + +++ +++ ++ +++ F NM + G VP+++ L IL+ ++ H++EV+ Sbjct: 305 IDVR-RDVSASVILNNLYKMTALQSSFGFNMLAIEKG-VPKILSLKRILENYIEHQQEVV 362 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVD 429 RR+ F + R IL+GL IA +IDEIIA+IR ++D+ K M+ RF L++ Q Sbjct: 363 TRRTQFDKNKAEARAHILEGLRIALDHIDEIIALIRASNSDDEAKNSMMERFKLSDRQAQ 422 Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489 AIL++RLR L LE +I++E LL + +L + ++ I E++E+ + F Sbjct: 423 AILDMRLRRLTGLERDKIENEYQGLLEFIADLTDILANPQRVLEIIQTELQELGQRFGDD 482 Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLS 541 RRT E+ IT ++N G+I R+ + + Sbjct: 483 -----RRTELLVGEVLSLEDEDLIEEEEIVIT--LTNNGYIKRVAKSEFRAQRRGGRGVQ 535 Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573 + + D +K + T D +L + GK Y Sbjct: 536 GMGIHDEDFVKTLISCSTHDTLLFFTNKGKVY 567 >gi|312621136|ref|YP_004022749.1| DNA gyrase subunit A [Caldicellulosiruptor kronotskyensis 2002] gi|312201603|gb|ADQ44930.1| DNA gyrase, A subunit [Caldicellulosiruptor kronotskyensis 2002] Length = 809 Score = 421 bits (1082), Expect = e-115, Method: Compositional matrix adjust. Identities = 258/697 (37%), Positives = 410/697 (58%), Gaps = 34/697 (4%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 V ++ +++ Y+ YA+S I RA+PD+RDG KPVHRRI++AM+E+GL ++KSA +V Sbjct: 11 VDIQEEMKKSYIDYAMSVIVSRALPDVRDGLKPVHRRILYAMNEIGLTPDKPYRKSATVV 70 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G V+ K HPHGD +VY+SLVR+AQ F R+PL+ G GNFG++DGD AA RYTEARM+++ Sbjct: 71 GHVLAKYHPHGDAAVYESLVRMAQDFSMRHPLVDGHGNFGSVDGDPPAAMRYTEARMSKI 130 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A +L+ ++++ VDF ++E EP V PS+FPNLL NG+ GIAVGMAT+IP HN+ E+ Sbjct: 131 AIEMLRDIEKETVDFMPNFDESAKEPKVLPSRFPNLLVNGSQGIAVGMATNIPPHNLAEV 190 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 +A + L+DN S++ +++ I GPDFPTGG I+ ++ I ++Y G+G VRA+ +E Sbjct: 191 IDAIVYLLDNENASLDDIMKIIKGPDFPTGGYII-GKKGIKDAYATGKGKIIVRAKATIE 249 Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFPKNR 318 + +G IVVTE+PY V K+RLIEKIAEL+ KRI + DIRDES E +RIV+ K + Sbjct: 250 QTSKGRQRIVVTELPYMVNKARLIEKIAELVHEKRIDGISDIRDESDKEGLRIVIEIK-K 308 Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378 D +++++ ++ + ++ F + M L + P+V+ L +L ++ H++EV+ RR+ + Sbjct: 309 DADANVVLKQLYKNTQLQDSFGIIMLAL-VDNQPKVLTLMDMLNLYIEHQKEVIVRRTKY 367 Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAILNLR 435 ++ + R IL+GL A +IDEII+IIR+ ++ K ++SRF TE Q AIL++R Sbjct: 368 DLKKAEERAHILEGLKKALDHIDEIISIIRSSRTVNEAKERLISRFQFTEVQAQAILDMR 427 Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495 L+ L LE +I+ EL L+ E ++L S I EI E+KE + R Sbjct: 428 LQRLTGLERQKIEEELAELIKMIEYYKNVLASDAMVKEIIKKEILEIKEKYKDE-----R 482 Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSVDLSALHFKE 547 RT + D + ++ IT +++ G+I+ L K ++ + +E Sbjct: 483 RTKIIQDEHEDFEEEELIQEQETVIT--LTHFGYIKRLPLDTYKSQKRGGRGITGISTRE 540 Query: 548 GDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602 D ++ T IL + G +AY +P G S + G AI LI + ++ I Sbjct: 541 EDFVEDVFVTTTHHYILFFTDKGRVFRLRAYEVPEG---SRQAKGTAIVNLIQIGKDEKI 597 Query: 603 V-TAFVYD-STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-D 659 T V D L++ + G V SE T+ GK + ++ ++ + V +G D Sbjct: 598 TATMAVKDFKEGYLMMCTKNGTIKKVLLSEFENTTKAGKKAITLADDDSLVDVKLTSGND 657 Query: 660 HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDG 695 + +V N ++F+ + + M R +GV+ + +DG Sbjct: 658 EIVLVSSNGYCVVFNENDVRSMGRTAQGVKGMTLEDG 694 >gi|56708601|ref|YP_170497.1| DNA gyrase, subunit A [Francisella tularensis subsp. tularensis SCHU S4] gi|110671072|ref|YP_667629.1| DNA gyrase, subunit A [Francisella tularensis subsp. tularensis FSC198] gi|224457786|ref|ZP_03666259.1| DNA gyrase, subunit A [Francisella tularensis subsp. tularensis MA00-2987] gi|254371233|ref|ZP_04987235.1| DNA gyrase [Francisella tularensis subsp. tularensis FSC033] gi|254875466|ref|ZP_05248176.1| DNA gyrase A [Francisella tularensis subsp. tularensis MA00-2987] gi|56605093|emb|CAG46208.1| DNA gyrase, subunit A [Francisella tularensis subsp. tularensis SCHU S4] gi|110321405|emb|CAL09591.1| DNA gyrase, subunit A [Francisella tularensis subsp. tularensis FSC198] gi|151569473|gb|EDN35127.1| DNA gyrase [Francisella tularensis subsp. tularensis FSC033] gi|254841465|gb|EET19901.1| DNA gyrase A [Francisella tularensis subsp. tularensis MA00-2987] gi|282159830|gb|ADA79221.1| DNA gyrase, subunit A [Francisella tularensis subsp. tularensis NE061598] Length = 868 Score = 421 bits (1082), Expect = e-115, Method: Compositional matrix adjust. Identities = 259/736 (35%), Positives = 420/736 (57%), Gaps = 87/736 (11%) Query: 11 TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70 +++ + ++++ L++ YL YA+S I RA+PD+RDG KPVHRR++ AM+E+ + Sbjct: 2 SIITKESSSINIEKELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELSNYYNR 61 Query: 71 AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130 +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG++DGDS AA R Sbjct: 62 PYKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYTLVDGQGNFGSVDGDSPAAMR 121 Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190 YTE RM ++ +L +D++ VDF Y+ + P V P++ PNLL NG+SGIAVGMAT+ Sbjct: 122 YTEIRMEKLTHELLIDIDKETVDFSPNYDNTELVPDVLPTRVPNLLVNGSSGIAVGMATN 181 Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250 IP HN+ E+ +ALIDNP ++IE+L+EYI+ PDFPTG I + I+E+Y+ GRG Sbjct: 182 IPPHNMTEVINGTIALIDNPNLTIEELIEYILAPDFPTGSYI-NGTDGILEAYKTGRGRV 240 Query: 251 RVRARWCV-EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED- 308 +RA+ + E+ G I+VTEIPYQV K++L+EKIAEL+ K++ + ++RDES +D Sbjct: 241 IMRAKADIHEDEASGKAQIIVTEIPYQVNKAKLVEKIAELVKDKKVAGISELRDESDKDG 300 Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368 +R+V+ K R P++++ +++ + ++ F +NM LS R P+++ L IL++++ HR Sbjct: 301 IRVVIDLK-RDESPEVVLNTLYAQTQLQCSFGINMVALSDNR-PKLLNLKEILEQFIKHR 358 Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----- 420 +EV+ RR+ F ++ R IL+GLL++ NIDE+I +I+ P K M++R Sbjct: 359 KEVVTRRTIFELRKSKERAHILEGLLLSLANIDEMIKLIKASPSPADAKESMLARSWNGS 418 Query: 421 ------------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSE 450 ++LTE Q DAIL LRL L LE+ +I +E Sbjct: 419 MVKSMLEGVDVKMYRKETLASHYGIQVDSSYNLTEEQADAILALRLHRLTGLEQDKIVNE 478 Query: 451 LDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATL 510 L+ + + S+L+ K+ + E+ E+++ + G +R + SR D Sbjct: 479 FKELIDRVKYLISILSDIKELIRVVKDELVEIRDNY------GDQRKSEIIESRLD--LT 530 Query: 511 QQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDR 562 ++ +I +E + V +S G++++ K V SA KE DS+ + A T D Sbjct: 531 REDLIAEEDMVVTLSMDGYVKTQPLSMYNAQKRGGVGKSATKTKEEDSIFKLMLASTHDT 590 Query: 563 ILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV----YDSTCK 613 +L S+ G K Y P + +S G I ++ L ++ I TA + ++ Sbjct: 591 MLCFSSLGRVYWSKVYDFPVASRIS---KGRPINNILPLEKDERI-TAMMPISQFNEGWY 646 Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIF 673 + + + G V+ SE KGK + ++ +++ +VA+ N+++++F Sbjct: 647 VFMATKLGRVKKVDLSEFARPRSKGKIAIGLNDGDELS--------YVALTDGNKQIMMF 698 Query: 674 SIDQIPEMSRGKGVRL 689 S GK +R Sbjct: 699 S-------DAGKAIRF 707 >gi|156740349|ref|YP_001430478.1| DNA gyrase subunit A [Roseiflexus castenholzii DSM 13941] gi|156231677|gb|ABU56460.1| DNA gyrase, A subunit [Roseiflexus castenholzii DSM 13941] Length = 823 Score = 421 bits (1082), Expect = e-115, Method: Compositional matrix adjust. Identities = 226/564 (40%), Positives = 354/564 (62%), Gaps = 22/564 (3%) Query: 30 YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89 YL YA+S I RA+PD RDG KPV RI++ M +MG+ FKK ARIVGE++GK+HPH Sbjct: 19 YLDYAMSVIVSRALPDARDGLKPVQTRILYGMWDMGIRANQPFKKCARIVGEILGKMHPH 78 Query: 90 GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDE 149 GD +VYD+LVRLAQP+ RYPL+ GQGNFG++DGD AA RYTEAR+T +AE +L +++ Sbjct: 79 GDSAVYDALVRLAQPWNMRYPLVEGQGNFGSVDGDPPAAMRYTEARLTPIAEEMLADIEK 138 Query: 150 DAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDN 209 + VDFRD ++ + EPVV P++ PNLL NG +GIAVGMAT+IP HN+ E+C+A LIDN Sbjct: 139 NTVDFRDNFDGQYREPVVLPARIPNLLLNGAAGIAVGMATNIPPHNLSEVCDAITHLIDN 198 Query: 210 PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIV 269 P+ ++E L++ + GPDFPT G+I+ + E I+ +Y GRG +RA+ +EE RG++ IV Sbjct: 199 PDATVEDLVKILPGPDFPTAGMILGT-EGIMNAYSTGRGHIIIRAKAHIEEAARGAFHIV 257 Query: 270 VTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKNRSLDPDLLMES 328 VTE+PYQV K+RL E+IAEL ++I + D+RDES +R+V+ K + P ++ + Sbjct: 258 VTELPYQVNKARLQERIAELARDRKIEGIRDVRDESDRSGMRLVIILKQDA-QPKKVLNA 316 Query: 329 IFMLSDMETRFPLNMNVL-SMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRV 387 ++ + M+T F +NM L GR P+++ L +L+E++ HRREV+ RR+ F + R Sbjct: 317 LYKHTQMQTTFGVNMLALVEGGRQPRLLTLKRMLQEYIDHRREVIRRRTEFDLDKARARA 376 Query: 388 EILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEE 444 IL+GL IA ++D +I IRN D + +++ F+L+E Q +AIL ++L L LE Sbjct: 377 HILEGLKIALDHLDAVITTIRNSRSRDNARANLMNGFALSEAQANAILEMQLGRLAALER 436 Query: 445 YQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSR 504 +I+ E ++ +++ +L + ++ + I ++ ++K + + RRT + Sbjct: 437 QRIEEEYREVIRLIGELEDILANPRKILHLIKQDLADLKAKYGDA-----RRTRI--IPE 489 Query: 505 ADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALH 556 A+ +I + + +++RG++ R+ + + +E D ++ L Sbjct: 490 ANGEVSDDDLIPDVKVLITLTDRGYVKRQSPDVYRTQRRGGRGIRGATTREQDVVRHILA 549 Query: 557 AHTTDRILLLSTDGKAYTLPAGNL 580 A+T D +L + GK Y + A L Sbjct: 550 ANTMDDLLFFTDRGKVYQIKAHEL 573 >gi|205371905|ref|ZP_03224725.1| DNA gyrase subunit A [Bacillus coahuilensis m4-4] Length = 805 Score = 421 bits (1082), Expect = e-115, Method: Compositional matrix adjust. Identities = 227/559 (40%), Positives = 356/559 (63%), Gaps = 20/559 (3%) Query: 26 LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85 ++ +L YA+S I RA+PD+RDG KPVHRRI++AM+++G+ A+KKSARIVGEVIGK Sbjct: 1 MKTSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGITSDKAYKKSARIVGEVIGK 60 Query: 86 LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145 HPHGD +VY+S+VR+AQ F RY L+ G GNFG++DGD+AAA RYTEARM++++ +++ Sbjct: 61 YHPHGDSAVYESMVRMAQNFNFRYMLVDGHGNFGSVDGDAAAAMRYTEARMSKISMELIR 120 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 +++D +D++D Y+ ++ EP V P++FPNLL NG SGIAVGMAT+IP H + EI + LA Sbjct: 121 DINKDTIDYKDNYDGQEREPAVLPARFPNLLVNGASGIAVGMATNIPPHQLGEIIDGLLA 180 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265 L N +I+I +L+E+I GPDFPT G+IV R I +Y G+G +RA+ +E+ G Sbjct: 181 LSKNRDITIPELMEFIHGPDFPTAGLIV-GRSGIRRAYETGKGSIMMRAKVEIEQKSNGK 239 Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325 I+V EIPYQV K++LIEKIA+L+ K+I + D+RDES + ++ R + +++ Sbjct: 240 ETIIVNEIPYQVNKAKLIEKIADLVRDKKIDGITDLRDESDRNGMRIVIEIRRDANANVV 299 Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385 + +++ + ++T F +NM L G+ P+V+ L L +L H++ V+ RR+ + ++ + Sbjct: 300 LNNLYKQTALQTSFGINMLALVDGQ-PKVLNLKQALDYYLDHQQIVIRRRTEYELRKAEA 358 Query: 386 RVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAILNLRLRSLRKL 442 R IL+GL IA +IDEIIA+IR D K ++++F+L+E Q AIL++RL+ L L Sbjct: 359 RAHILEGLRIALDHIDEIIALIRGSQTTDIAKEGLMTQFNLSEKQAQAILDMRLQRLTGL 418 Query: 443 EEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEV 502 E +I+ E NL A ++ +L ++ I E+ E+K+ F+ RRT V Sbjct: 419 EREKIEEEYKNLQALIAELRGILADEEKVLEIIREELLEIKDRFNDV-----RRTEI--V 471 Query: 503 SRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIA 554 + + + +I +E I + +++ G+I RS K + + + D ++ Sbjct: 472 AGGIENIEDEDLIPRENIVITLTHNGYIKRLPASTYRSQKRGGRGVQGMGTNDDDFVEHL 531 Query: 555 LHAHTTDRILLLSTDGKAY 573 L+ T D IL + GKAY Sbjct: 532 LYTSTHDTILFFTNKGKAY 550 >gi|193211771|ref|YP_001997724.1| DNA gyrase subunit A [Chlorobaculum parvum NCIB 8327] gi|193085248|gb|ACF10524.1| DNA gyrase, A subunit [Chlorobaculum parvum NCIB 8327] Length = 826 Score = 421 bits (1082), Expect = e-115, Method: Compositional matrix adjust. Identities = 238/574 (41%), Positives = 347/574 (60%), Gaps = 24/574 (4%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 E + +S+ + + YL Y++S I RA+PD+RDG KPVHRR+++ M E+GL KK Sbjct: 4 EKILPISIEEEMRDAYLDYSMSVIVSRALPDVRDGLKPVHRRVLYGMHELGLQSNKPHKK 63 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 SAR+VGEV+GK HPHGD +VYDSLVR+ Q F RYPLI GQGNFG++DGDS AA RYTE Sbjct: 64 SARVVGEVLGKYHPHGDSAVYDSLVRMVQDFSLRYPLIDGQGNFGSVDGDSPAAMRYTEV 123 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 RM +A +L+ +D++ VDF +++ EP V PS PNLL NG SGIAVGMAT+IP H Sbjct: 124 RMKAIAGEMLKDLDKETVDFALNFDDSLEEPTVLPSAIPNLLVNGASGIAVGMATNIPPH 183 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 N++E+ +A+ID+PEI I L++Y+ PDFPTGGII E + ++Y GRG +RA Sbjct: 184 NMREVVSGLIAMIDDPEIEITDLMKYVTAPDFPTGGIIY-GYEGVRQAYLTGRGKVVIRA 242 Query: 255 RWCVEEVGR-GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIV 312 R VE + G I+VTE+PYQV K RLIEKI EL+ K+I + DIRDES E +R+V Sbjct: 243 RAVVEVTQKNGRESIIVTELPYQVNKVRLIEKIVELVHDKKIEGIADIRDESDREGMRLV 302 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 + K R P +++ ++ + M+ F + M L G VP+V+ L +++ ++ HR E++ Sbjct: 303 IELK-RDAVPKVVLNHLYKHTPMQDTFGVIMLALVDG-VPRVLNLKEMMQYYIRHRNEIV 360 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE-DKP--KPVMVSRFSLTENQVD 429 RR+ + + A ++R IL+GL I N+DE+I IR D P + ++ RF LTE Q Sbjct: 361 LRRTQYDLNAAEKRAHILEGLKICLDNLDEVITTIRQSPDTPTAQSRLIDRFGLTEVQAK 420 Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489 AIL +RL+ L +E +I E +A E++ S+L S +Q I E+ +V E++ Sbjct: 421 AILEMRLQRLTGMERQKIDDEYKQTMALIEELKSILASPAKQMEIIKEELLKVSEVY--- 477 Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL------KSH--SVDLS 541 G R T D + + MI +E + + I++ G+I+ + H ++ Sbjct: 478 ---GDERRTEMRPQEGDFSI--EDMIAQEDVVITITHDGFIKRFPVSGYRRQHRGGRGVA 532 Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575 K D ++ A T + IL +T G+ Y L Sbjct: 533 GAQAKNEDFIEHMFIASTHNYILFFTTAGRCYWL 566 >gi|328954620|ref|YP_004371953.1| DNA gyrase subunit A [Coriobacterium glomerans PW2] gi|328454944|gb|AEB06138.1| DNA gyrase subunit A [Coriobacterium glomerans PW2] Length = 922 Score = 421 bits (1081), Expect = e-115, Method: Compositional matrix adjust. Identities = 245/593 (41%), Positives = 358/593 (60%), Gaps = 25/593 (4%) Query: 26 LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85 + + ++ Y++S I RA+PD+RDG KPVHRRI++AM+E G+ KKSA VGEVIGK Sbjct: 86 MRQSFIEYSMSVITARALPDVRDGLKPVHRRILYAMNESGIYPNRPHKKSAWTVGEVIGK 145 Query: 86 LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145 HPHGD +VYD++VRLAQ F R PLI G GNFGNIDGD AAA RYTE+R+ + A +L+ Sbjct: 146 YHPHGDTAVYDTMVRLAQWFSMRTPLIDGHGNFGNIDGDGAAAMRYTESRLARPAMELLR 205 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 + +D VD++ Y+E SEP V P++FPNLL NG+SGIAVGMAT+IP HN+ E EAA A Sbjct: 206 DLQKDTVDWQPNYDESLSEPQVLPARFPNLLVNGSSGIAVGMATNIPPHNLLEAVEAACA 265 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265 LID+PEI+ ++L++ I GPDFPTG +I+ + E I ++Y GRG VRA+ +E G Sbjct: 266 LIDDPEITTDELMQIIPGPDFPTGAVIMGT-EGIHKAYETGRGSITVRAKAHIESTKTGR 324 Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFPKNRSLDPDL 324 +V TEIPYQV K L EKIA+L+ KR+ + D+RDES + +R+V+ K + + P + Sbjct: 325 NRLVFTEIPYQVNKGSLQEKIAQLVNEKRLEGISDMRDESTGKGLRLVIELK-KGVIPQV 383 Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384 ++ +++ + +++ F +N L G PQ + L +L ++AH+ +V+ RR+ F ++ Sbjct: 384 VLNNLYKFTSLQSTFGINNLALVEG-APQSLSLRDMLSHYIAHQVDVVNRRTRFDLKKAR 442 Query: 385 RRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAILNLRLRSLRK 441 R IL+G LIA +IDE+I+IIR+ + + + RF T+ Q AIL ++LR L Sbjct: 443 ARAHILEGYLIALDHIDEVISIIRSSETDAEASARLTERFGFTDRQTAAILEMKLRRLTG 502 Query: 442 LEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCE 501 LE +I +ELD L E + LL ++ I E+RE+ F RRT E Sbjct: 503 LERGKIAAELDALRQAIEYYEDLLAHKEKVLAVIKEEMREIARKFGDP-----RRT---E 554 Query: 502 VSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKI 553 + A+K + +I E + V I++ G++ RS K +S ++ KE D + Sbjct: 555 IREAEKELDVEDLIADEDMVVTITHTGYVKRIPVATYRSQKRGGKGVSGVNLKEDDVIAE 614 Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQDIVT 604 A T + +L ST GK Y L L G + G AI L+ + I + Sbjct: 615 MFIASTHEFVLFFSTRGKVYRLKVHELPVGSRQARGAAIVNLLPFEEGEKIAS 667 >gi|319898825|ref|YP_004158918.1| DNA gyrase subunit A [Bartonella clarridgeiae 73] gi|319402789|emb|CBI76338.1| DNA gyrase subunit A [Bartonella clarridgeiae 73] Length = 923 Score = 421 bits (1081), Expect = e-115, Method: Compositional matrix adjust. Identities = 259/727 (35%), Positives = 397/727 (54%), Gaps = 71/727 (9%) Query: 3 VDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62 D + S V ++ VS+ ++ YL YA+S I RA+PD+RDG KPVHRRI+HAM+ Sbjct: 2 TDLTTQSEHDVLTGIEPVSIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAMN 61 Query: 63 EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122 EMGL F +++KSA +VGEV+GK HPHGD S+YD+LVR+AQ F R PLI GQGNFG++D Sbjct: 62 EMGLSFNKSYRKSAGVVGEVMGKFHPHGDASIYDALVRMAQDFSLRNPLIDGQGNFGSVD 121 Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182 GD AA RYTE R+ ++AE +L +D++ +DF+D Y+ + EPVV P++FPNLL NG+ G Sbjct: 122 GDPPAAMRYTECRLEKIAEELLADIDKETIDFQDNYDGREREPVVLPARFPNLLVNGSGG 181 Query: 183 IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242 IAVGMAT+IP HN+ E+ + +ALIDNP I++++++E I GPDFPTGGII+ R I + Sbjct: 182 IAVGMATNIPPHNLGEVIDGCIALIDNPTITLDEIIEIIPGPDFPTGGIIL-GRSGIRSA 240 Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302 Y GRG +RA+ +EEV I+V+EIPYQ+ K+ +IEKIAEL+ KRI + D+R Sbjct: 241 YETGRGSIIMRAKVDIEEVRNNRQAIIVSEIPYQINKATMIEKIAELVRDKRIEGISDLR 300 Query: 303 DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362 DES D V+ R D+++ ++ + ++T F N+ L+ G+ P+ M L +L+ Sbjct: 301 DESDRDGYRVVIELKREAVADIVLNQLYHYTPLQTSFGCNIVALNGGK-PEQMTLLDMLR 359 Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV---- 418 +++ R EV+ RR+ + ++ R IL GL IA NIDEIIA+IR P+ + Sbjct: 360 AFVSFREEVVSRRTKYLLRKARERAHILVGLAIAVANIDEIIALIREAPDPQTARLQLME 419 Query: 419 -------------------------SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453 + ++L+E Q AIL LRL+ L L +I EL+ Sbjct: 420 RRWLAADVAFLVKLIDDPRHIIHENNTYNLSEEQARAILELRLQRLTALGRDEIADELNK 479 Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTF----CEVSRADKAT 509 + + +L S + + E+ ++E F+ RRT F E+ D Sbjct: 480 IGVDITDYLHILASRLRIMGIVKDELSTLREEFAAP-----RRTIFGFGNIEMDNED--- 531 Query: 510 LQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTD 561 +I E + V +S+ G+I R+ + S + K+ D + ++T Sbjct: 532 ----LIVPEDMVVTVSHSGYIKRVPLNTYRAQRRGGKGRSGMSTKDEDFVTRLFVSNTHT 587 Query: 562 RILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD------S 610 +L S+ G K + LP G + + G A+ ++ L + I T S Sbjct: 588 PVLFFSSRGIVYKEKVWRLPIG---TPQSRGRALVNMLPLQEGERITTIMPLPEDEASWS 644 Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--DHVAVVGENR 668 ++ +++G + S+ + R GK +K+ E L V+ D V + N Sbjct: 645 KLDVMFATTRGTVRRNKLSDFVQVNRNGKIAMKLDEEGDAILSVETCTERDDVVLTTANG 704 Query: 669 KLLIFSI 675 + + F + Sbjct: 705 QCIRFPV 711 >gi|94987226|ref|YP_595159.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit [Lawsonia intracellularis PHE/MN1-00] gi|94731475|emb|CAJ54838.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit [Lawsonia intracellularis PHE/MN1-00] Length = 820 Score = 421 bits (1081), Expect = e-115, Method: Compositional matrix adjust. Identities = 258/711 (36%), Positives = 403/711 (56%), Gaps = 38/711 (5%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 +S+ + + YL Y+LS I RAIPD+RDG KPVHRRI+ A E+G + KK ARIV Sbjct: 8 ISIEQEMRKSYLEYSLSVIIGRAIPDVRDGLKPVHRRILFAQQELGNSYTRPPKKCARIV 67 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGD +VYD+LVR+AQ F R PL GQGNFG+IDGD+ AA RYTE RM+++ Sbjct: 68 GDVIGKYHPHGDSAVYDALVRMAQDFSMRDPLEEGQGNFGSIDGDAPAAMRYTEVRMSRL 127 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A L +D++ VDFR Y+ EP+V P+K PNLL NG+SGIAVGMAT+IP HN+ E+ Sbjct: 128 ASEFLSDIDKETVDFRPNYDNSLEEPIVLPTKVPNLLLNGSSGIAVGMATNIPPHNLGEL 187 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 C A L +ID+P++ I+ LL I GPDFPTGG I + + ++Y GRG +VR + +E Sbjct: 188 CNALLKIIDDPDVPIDNLLNIIHGPDFPTGGFIYVG-QGLYDAYTKGRGTVKVRGKVEIE 246 Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFPKNR 318 E +G+ IV+ EIP+ + KS L+EKIA L+ ++I + D+RDES + +R+V+ K + Sbjct: 247 ERKKGAQSIVIREIPFGLNKSSLVEKIAILVNERKIDGIADLRDESDRKGIRVVIELK-K 305 Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378 + P++++ +++ + +ET F +NM + R PQ++ + L +L HRREV+ RR+ F Sbjct: 306 GVIPEIIINALYKFTPLETSFGINMLAVVDNR-PQLLTIKSALTYFLDHRREVIVRRTRF 364 Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVDAILNLR 435 + + R+ IL GL+ A +IDE++ +IR+ P K ++ RFSL+E Q +IL++R Sbjct: 365 ELNKAEARLHILIGLIHALDHIDEVVNLIRSSSTPAEAKIRLIERFSLSEIQAQSILDMR 424 Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495 L+ L LE +++ E+ L + +S+L K W I E+ +KE+++ R Sbjct: 425 LQRLTGLEREKLEEEMHELQTKIAWYESILGDTKILWGVIRDEVTGIKEMYTTP-----R 479 Query: 496 RTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSL--------KSHSVDLSALHFK 546 RT EV R ++ + +I + + + +S RG+I+ + ++ LH Sbjct: 480 RT---EVIRETLTNIEIEDLIPDDDVVITLSRRGYIKRTNLAIYQQQRRGGKGVAGLHTS 536 Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQ---D 601 E D ++ + +LL + G+ + L + G G I ++ L + Sbjct: 537 EDDFVQEFITTTNHQFLLLFTNKGRMHQLKVHQVPEGSRTAKGTHIANIVPLEKEEWVTT 596 Query: 602 IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHV 661 I+T + L + KG S + R G + + ++++ +V +VT + Sbjct: 597 ILTVREFSDNKFFLFATRKGMVKRSSASYYARSRRTGLLAVGLREDDELIMVKEVTNNDF 656 Query: 662 AVVGENRKLLI-FSIDQIPEMSRG----KGVRLQSYKDGGISDVICFKICE 707 V+ I FS + + M RG KG+ L+ G S V C + E Sbjct: 657 IVLATAEGFAIRFSCEDVRNMGRGAAGVKGIALRP----GDSVVACLILQE 703 >gi|254478919|ref|ZP_05092281.1| DNA gyrase, A subunit [Carboxydibrachium pacificum DSM 12653] gi|214035141|gb|EEB75853.1| DNA gyrase, A subunit [Carboxydibrachium pacificum DSM 12653] Length = 807 Score = 421 bits (1081), Expect = e-115, Method: Compositional matrix adjust. Identities = 275/764 (35%), Positives = 441/764 (57%), Gaps = 46/764 (6%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 + V V + + Y+ YA+S I RA+PD+RDG KPVHRRI++AM+EMGL +KK Sbjct: 6 DKVIPVDIEDEMRNSYIDYAMSVIVGRALPDVRDGLKPVHRRILYAMNEMGLTPDKPYKK 65 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 S +VGEV+GK HPHGD +VYD+LVRLAQ F R LI G GNFG+IDGD AA RYTEA Sbjct: 66 SVAVVGEVLGKYHPHGDAAVYDTLVRLAQDFSMREVLIDGHGNFGSIDGDPPAAMRYTEA 125 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 R++++A +L ++++ VDF ++E EPVV PS+FPNLL NG+ GIAVGMAT+IP H Sbjct: 126 RLSRIALEMLTDINKETVDFVPNFDETLKEPVVLPSRFPNLLVNGSQGIAVGMATNIPPH 185 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 N+ E+ + +A IDNP I++++L++YI GPDFPTGGII+ R+ I E+Y GRG VRA Sbjct: 186 NLAEVIDGIVAYIDNPYITVDELMKYIKGPDFPTGGIIL-GRDGIKETYETGRGKIIVRA 244 Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314 + +EE +G IV+TEIPY V K++LIEKIAEL+ K+I + D+RDES + ++ Sbjct: 245 KAEIEE-HKGKTRIVITEIPYMVLKAKLIEKIAELVHNKQIEGIADLRDESDRNGMKIVI 303 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 R ++P +++ ++M + M+ F M L G P+++ L I+++++ H+ +V+ R Sbjct: 304 ELKRDVNPKVILNKLYMHTQMQQTFGAIMLALVDGE-PKILNLKQIIEKYVDHQADVVTR 362 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLTENQVDAI 431 R+ F ++ + R IL+GL IA IDE+I IIR+ E K ++ RF L++ Q AI Sbjct: 363 RTKFDLKKAEERAHILEGLKIALDYIDEVINIIRSSKTEAIAKENLMKRFGLSDKQAQAI 422 Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491 +++RL L LE +++ EL L+ + +++ +L ++ I E+ E+K ++ Sbjct: 423 VDMRLGRLTGLERQKVEDELKELIEKIKELKEILADERKVLEIIKKELLEIKNKYASP-- 480 Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSAL 543 R+T V++ ++ + +++ E + V +++ G+I +S K + + Sbjct: 481 ---RKTVI--VAKEEELDFED-LVQLEDVVVTMTHYGYIKRMPLDTYKSQKRGGKGILGI 534 Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEAIQLLIDLNHNQD 601 +E D ++ T DR+L + GK Y+L ++ SGR G AI LI ++ + Sbjct: 535 STREDDFVEDIFITTTHDRLLFFTNKGKVYSLRTIDIPESGRQAKGTAIVNLIQISQGEK 594 Query: 602 IVTAFV----YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV-VKV 656 VTA + D +L+ + KG E + R G + ++ +E +L+ VK+ Sbjct: 595 -VTAVIPLKKSDDIKYVLMCTKKGIIKKTSIEEFKSIKRNG--IIAITLDENDELINVKL 651 Query: 657 T-GDHVAVVGENRKLLI-FSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKIC----EGL 709 T G+ ++G + +I F+ + M R +GV S ++ +V+ + E L Sbjct: 652 TNGEREVIIGTAKGYVIRFNEKDVRPMGRVARGVMAISLRED--DEVVEMDLVHPDGEVL 709 Query: 710 TWIDSA-GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752 T + G+ + E + G R G G + K ++GK +S Sbjct: 710 TVTEKGFGKRTDLEEYRIQG----RAGKGIIAMKLSKKTGKLVS 749 >gi|269963959|ref|ZP_06178268.1| DNA gyrase, subunit A [Vibrio harveyi 1DA3] gi|269831302|gb|EEZ85452.1| DNA gyrase, subunit A [Vibrio harveyi 1DA3] Length = 879 Score = 421 bits (1081), Expect = e-115, Method: Compositional matrix adjust. Identities = 269/725 (37%), Positives = 404/725 (55%), Gaps = 64/725 (8%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + V++ L YL YA+S I RA+PD+RDG KPVHRR++ AM+ +G D+ +KKSA Sbjct: 8 ITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSA 67 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG+IDGDSAAA RYTE RM Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVRM 127 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 ++A +L +D++ VD+ Y+ + P V P+K PNLL NG SGIAVGMAT+IP HN+ Sbjct: 128 AKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGASGIAVGMATNIPPHNL 187 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ + LA I+N EI+I++L++YI GPDFPT +I R+ IV++Y+ GRG +R++ Sbjct: 188 GEVIDGCLAFINNEEITIDELMDYIPGPDFPTAALI-SGRKGIVDAYKTGRGKIYMRSKA 246 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFP 315 +E G I+VTEIPYQV K+RLIEKIAEL+ K++ + +RDES +D +RIV+ Sbjct: 247 EIEVEKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIEC 306 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 K R ++++ +++ + ++T F +NM L+ G+ PQ+ L +LK ++ HRREV+ RR Sbjct: 307 K-RDAVGEVVLNNLYAQTQLQTTFGINMVALNNGQ-PQLFNLKDMLKCFVDHRREVVTRR 364 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR------------ 420 + F ++ R IL+ L +A NIDE+I +I+N P K +VSR Sbjct: 365 TIFELRKARERAHILEALSLALANIDEVIELIKNAPTPAEAKVGLVSRGWDLGNVASMLE 424 Query: 421 ----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458 + LTE Q AIL LRL L LE +I E LL E Sbjct: 425 RAGTDAARPEWLEDQYGIRDGLYYLTETQAQAILELRLHRLTGLEHEKILDEYKALLDEI 484 Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518 ++ +L S ++ I E+ V++ + RRT E++ A + +I +E Sbjct: 485 AELMHILASTERLMEVIREELEAVRDGYGDV-----RRT---EITAATHDIDMEELIARE 536 Query: 519 PITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570 + V +S+ G+++ + + SA K+ D ++ L A+T D IL ST G Sbjct: 537 DVVVTLSHEGYVKYQILSDYEAQRRGGKGKSATKMKDEDFIERLLVANTHDNILCFSTRG 596 Query: 571 KAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAFVYD--STCKLLVVSSKGNAFIV 626 K Y L L + G+ I ++ L + I D S K + +++ Sbjct: 597 KTYRLKVYQLPHATRTARGKPIVNILPLEEGERITAILPVDEFSPEKFIFMATGDGTVKK 656 Query: 627 EESEIIANTR-KGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR- 683 AN R G + + ++ + V GD + + + K++ FS D++ M R Sbjct: 657 TPLNQFANVRSNGLIAVNLRDDDSLIGVDITNGDSDIMLFSKAGKVVRFSEDKVRAMGRT 716 Query: 684 GKGVR 688 GVR Sbjct: 717 AAGVR 721 >gi|294101263|ref|YP_003553121.1| DNA gyrase, A subunit [Aminobacterium colombiense DSM 12261] gi|293616243|gb|ADE56397.1| DNA gyrase, A subunit [Aminobacterium colombiense DSM 12261] Length = 817 Score = 421 bits (1081), Expect = e-115, Method: Compositional matrix adjust. Identities = 259/686 (37%), Positives = 402/686 (58%), Gaps = 38/686 (5%) Query: 26 LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85 ++ YL YA+S I RA+PD RDG KPV RRI++AM E+GL A+KKSAR+VGE +GK Sbjct: 22 IKHSYLDYAMSVIVGRALPDARDGLKPVQRRILYAMMELGLRHNTAYKKSARVVGETMGK 81 Query: 86 LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145 HPHGD ++YD++VR+AQ F RYPL+ GQGNFG+IDGD AAA RYTEAR+ ++ EL+L Sbjct: 82 YHPHGDSAIYDTMVRMAQDFSMRYPLVDGQGNFGSIDGDPAAAMRYTEARLYEIGELMLA 141 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 +D+D VD+ ++E EP+ P+ PNLL NG+SGIAVGMAT+IP HN+ E+ +A Sbjct: 142 DIDQDTVDWGPNFDESLQEPLCLPAMLPNLLINGSSGIAVGMATNIPPHNLVEVVDALCY 201 Query: 206 LIDN-PE-ISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGR 263 LID PE + I ++L + GPDFPTGG+I+ R+ I+++YR GRG +R R +EE R Sbjct: 202 LIDTEPEQVDIGEILFRMPGPDFPTGGLIL-GRDGIIDAYRTGRGKITMRGRTHIEEGKR 260 Query: 264 GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFPKNRSLDP 322 G IV+TEIPY V K+ LIE IA+ + K I + D+RDES E +RIV+ NR DP Sbjct: 261 GKTFIVITEIPYMVNKTNLIETIAKNVQDKTIDGVMDLRDESDREGLRIVI-EVNRDTDP 319 Query: 323 DLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQA 382 +L++ ++ + +++ F + +N+ + P+ + ++ +L +L HRR V+ RR+ FR++ Sbjct: 320 NLVLRQLYRRTQLQSTFGV-INLALIDGYPKELSIEEMLNIFLNHRRSVVRRRTQFRLEK 378 Query: 383 IDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAILNLRLRSL 439 + R I++GL+ A IDE+IA+IR ++ K ++S+ +E Q AIL +RL+ L Sbjct: 379 AEARAHIVEGLVKALDIIDEVIALIRGSATTEEAKEGLISKLDFSEAQAQAILEMRLQRL 438 Query: 440 RKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTF 499 LE ++++EL LL++ E+ ++L + K + I E+ EVK F G R T Sbjct: 439 TGLEREKLEAELAQLLSDIERYQTILGNPKVLDSVIKEELLEVKRRF------GNERKT- 491 Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSVDLSALH------FKEGDSL 551 E+ A + + +I + I VV+S G++R L+ +++ +E D + Sbjct: 492 -EIIDAVEDVSIEDLIPESDIVVVLSRDGYLRRKDLQEYTLQGRGGKGRKGTALQEEDEV 550 Query: 552 KIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606 + T I L ++ G K Y +P S G G+ I + L + +VT Sbjct: 551 ALVAVTSTHRDIYLFTSKGRVLALKGYVIPE----SKTGRGKLINRFVALEEGERVVTMH 606 Query: 607 --VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAV 663 D ++ +G A ++ SE+ TR G+ + + +++ +V +G DH+ + Sbjct: 607 GRAVDGAKYAFFITLRGTAKRLDLSELENLTRAGRRVMGLDEGDEISQIVLTSGDDHLLI 666 Query: 664 VGENRKLLIFSIDQIPEMSR-GKGVR 688 V + L + M R +GVR Sbjct: 667 VTAQGQALRTHESEFRPMGRTARGVR 692 >gi|317155004|ref|YP_004123052.1| DNA gyrase subunit A [Desulfovibrio aespoeensis Aspo-2] gi|316945255|gb|ADU64306.1| DNA gyrase, A subunit [Desulfovibrio aespoeensis Aspo-2] Length = 815 Score = 421 bits (1081), Expect = e-115, Method: Compositional matrix adjust. Identities = 247/624 (39%), Positives = 378/624 (60%), Gaps = 34/624 (5%) Query: 19 AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78 +S+ L++ YL Y+LS I RAIPD+RDG KPVHRRI+ AM ++G ++KKSAR+ Sbjct: 4 TISIESELKKSYLEYSLSVIIGRAIPDVRDGLKPVHRRILFAMHDLGNYHNRSYKKSARV 63 Query: 79 VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138 VG+VIGK HPHGD +VYD+LVR+AQ F R L+ GQGNFG+IDGD+AAA RYTE RM + Sbjct: 64 VGDVIGKYHPHGDSAVYDALVRMAQEFSMRDTLVDGQGNFGSIDGDAAAAMRYTEVRMAR 123 Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198 + L +++ VDFR Y+ EP V P+K PNLL NGT+GIAVGMAT+IP HN+ E Sbjct: 124 LCSEFLGDIEKQTVDFRPNYDNTMQEPTVLPTKVPNLLLNGTTGIAVGMATNIPPHNLSE 183 Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258 + + + L+DNP ++E ++ ++ GPDFPTGG++ + + ++Y GRG ++R + Sbjct: 184 LIDGCVHLLDNPGCTVEDMMAFVKGPDFPTGGLVYGG-QGLYDAYTTGRGSIKIRGVVEI 242 Query: 259 EEVGRGSW-CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFPK 316 EE GRG IV+ EIPY + KS L+EKIA L+ K+I + D+RDES +RIVL K Sbjct: 243 EETGRGKKEAIVIREIPYALNKSTLVEKIAALVHEKKIDGVADLRDESDRRGIRIVLDLK 302 Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376 R D+++ +++ + +ET F +NM + +G+ P ++ L +L +L HRREV+ RR+ Sbjct: 303 -RGAIADIIINALYKYTPLETSFGINMMAV-VGKRPMLLNLKSVLDYFLDHRREVVIRRT 360 Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAILN 433 F + ++RV IL+GL IA NIDE++ +IR + D+ K +++RFSL+E Q AIL+ Sbjct: 361 KFDLDKCEKRVHILEGLRIALDNIDEVVKLIRASKSPDEAKEALMARFSLSEIQAKAILD 420 Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493 +RL+ L LE ++ EL LL + E S+LN+ + I E++E+KE +S Sbjct: 421 MRLQKLTGLEHDKLLEELAELLKKIEYFTSILNNEDVLKSVIRDELKEIKENYSTP---- 476 Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSVD------LSALHF 545 RR+ + D ++ +I E V +S RG+I+ L +++ +S + Sbjct: 477 -RRSELL-TANPDAIDIED-LIPDEETVVTLSQRGYIKRTPLSNYTAQRRGGKGISGVQT 533 Query: 546 KEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQ 600 +GD + + ++L + G KA+ +P G+ + GH + L+ L+ ++ Sbjct: 534 GDGDFIHTFMLTTNHQHLVLFTNLGKMFKIKAHQVPEGSRYAKGGH---VANLLPLDKDE 590 Query: 601 DIVTAFV---YDSTCKLLVVSSKG 621 I TA +D L ++ KG Sbjct: 591 CITTALSLREFDDDRFFLFLTKKG 614 >gi|254469835|ref|ZP_05083240.1| DNA gyrase, A subunit [Pseudovibrio sp. JE062] gi|211961670|gb|EEA96865.1| DNA gyrase, A subunit [Pseudovibrio sp. JE062] Length = 930 Score = 421 bits (1081), Expect = e-115, Method: Compositional matrix adjust. Identities = 246/646 (38%), Positives = 374/646 (57%), Gaps = 55/646 (8%) Query: 1 MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60 M ++S + +++ VS+ ++ YL YA+S I RA+PD+RDG KPVHRRI+++ Sbjct: 1 MADQDLSTPPGGLPSDIRPVSITDEMKRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYS 60 Query: 61 MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120 M E G ++ ++KSAR+VG+V+GK HPHGD ++YD+LVR+AQ F R PLI+GQGNFG+ Sbjct: 61 MHENGYEWNKPYRKSARVVGDVMGKYHPHGDSAIYDALVRMAQDFSMRLPLINGQGNFGS 120 Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180 IDGD AAA RYTE R+ +VA L +D+D V+F + Y+ + EP V P+++PNLL NG Sbjct: 121 IDGDRAAAMRYTECRLEKVAHTQLSDIDKDTVNFHENYDGSEQEPEVLPARYPNLLVNGA 180 Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240 GIAVGMAT+IP HN+ E+ + +A+I+ PEI++ +L+E I GPDFPTGGII+ R I Sbjct: 181 GGIAVGMATNIPPHNMGEVIDGTIAMIERPEITLPELMEIIPGPDFPTGGIIL-GRAGIK 239 Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300 +Y GRG +R++ EE+ G I+V+EIPYQV KS +IEKIAEL+ KRI + D Sbjct: 240 AAYENGRGSVIMRSKVDTEEIRAGRMAIIVSEIPYQVNKSAMIEKIAELVREKRIEGISD 299 Query: 301 IRDES-AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359 IRDES + +R+V+ K ++ PD+++ ++ S ++ F NM L+ GR P+ + L Sbjct: 300 IRDESDRQGMRVVIELKKDAV-PDVIVNQLYRYSQLQQSFGCNMVALNGGR-PEQLALKD 357 Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS 419 +LK ++A R EV+ RR+ F + R +L GL +A NID++I +IR P P Sbjct: 358 MLKAFIAFREEVVGRRTRFLLAKARDRAHVLVGLAVATANIDDVIHLIRT--APDPATAR 415 Query: 420 R-------------------------------FSLTENQVDAILNLRLRSLRKLEEYQIK 448 R F L+E+Q AIL+LRL+ L L +I Sbjct: 416 RQLMERNWPAKDIEPLIQLIDDPRYAIQEDGTFKLSEDQARAILDLRLQRLTALGRDEIG 475 Query: 449 SELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKA 508 ELD L AE + +L S ++ + E+ EV++ F+ RRT E++ Sbjct: 476 DELDKLAAEIKDYLDILKSRERILEIVRTELEEVRDEFATP-----RRT---EITDGGGD 527 Query: 509 TLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTT 560 + +I++E + V +S+ G+I R+ + S + K+ D + A+T Sbjct: 528 LDDEDLIQREDMVVTVSHSGYIKRVPLDTYRAQRRGGKGRSGMQTKDEDFVTRLFVANTH 587 Query: 561 DRILLLSTDGKAYTLPAGNL-LSG-RGHGEAIQLLIDLNHNQDIVT 604 +L S+ G AY + L L+G + G A+ ++ L + I + Sbjct: 588 TPVLFFSSRGIAYKMKVWRLPLAGPQARGNALVNMLPLEQGERITS 633 >gi|260433573|ref|ZP_05787544.1| DNA gyrase, A subunit [Silicibacter lacuscaerulensis ITI-1157] gi|260417401|gb|EEX10660.1| DNA gyrase, A subunit [Silicibacter lacuscaerulensis ITI-1157] Length = 909 Score = 421 bits (1081), Expect = e-115, Method: Compositional matrix adjust. Identities = 244/611 (39%), Positives = 366/611 (59%), Gaps = 51/611 (8%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 VS+ + YL YA+S I RAIPDLRDG KPVHRRI++AM E G ++KSAR V Sbjct: 26 VSIESEMRTSYLDYAMSVIVSRAIPDLRDGLKPVHRRILYAMHETGNTHDKPYRKSARPV 85 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+V+GK HPHGD ++YD+LVR+AQ F PL+ GQGNFG++DGD+ AA RYTE RM + Sbjct: 86 GDVMGKYHPHGDSAIYDALVRMAQDFSMSLPLLDGQGNFGSMDGDNPAAMRYTEVRMDKP 145 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A +L ++++ VDF+D Y+ +D EP V P++FPN+L NG GIAVGMAT+IP HN+ E+ Sbjct: 146 AAALLADIEKETVDFQDNYDGKDKEPTVLPARFPNMLVNGAGGIAVGMATNIPPHNLGEV 205 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 +A LALI++P+++ E+L+EYI GPDFPTGG+++ R ++Y GRG +RA+ VE Sbjct: 206 VDATLALIEDPDLTSEQLIEYIPGPDFPTGGVML-GRSGARKAYLEGRGSVIIRAKTRVE 264 Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKNR 318 E+ + + IVV EIPYQV K+ +IEKIAE + KRI + ++DES + VR+V+ K R Sbjct: 265 EIRKDRYAIVVDEIPYQVNKASMIEKIAEAVREKRIEGVSHVQDESDRNGVRVVVELK-R 323 Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378 P++++ ++ + M+T F NM L+ GR P+ + L L ++ R +V+ RR+++ Sbjct: 324 DATPEVVLNQLYRFTPMQTSFGCNMLALNGGR-PEQLTLRRFLTSFIDFREDVVARRTAY 382 Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---------------------------D 411 ++ R +L GL +A N+DE++A IR+ D Sbjct: 383 DLRKARERSHVLCGLAVAVSNVDEVVATIRSSADAAEAREKLMTRRWPAAEIESYLRLID 442 Query: 412 KPKPVMV--SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGK 469 P M ++L+E Q AIL+LRL+ L ++ ++ EL++L A+ ++ +L+S + Sbjct: 443 DPLSKMNDDGTYNLSEAQARAILDLRLQRLTQIGVKEVTDELEDLAAKIKEYLDILSSRE 502 Query: 470 QQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW 529 + IA E+REVKE F+ RRT + S + +IE+E + V +++ G+ Sbjct: 503 RIMGIIADELREVKENFAVP-----RRTQIVDWS---GDMEDEDLIEREDMVVTVTSGGY 554 Query: 530 I--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL- 580 I R+ K LS + KE D + A+T ++L +TDG Y L L Sbjct: 555 IKRTPLADFRAQKRGGKGLSGMQTKEEDVVTTLFVANTHTQLLFFTTDGMVYKLKTWRLP 614 Query: 581 LSGR-GHGEAI 590 SGR G G+AI Sbjct: 615 QSGRTGKGKAI 625 >gi|218887174|ref|YP_002436495.1| DNA gyrase subunit alpha [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218758128|gb|ACL09027.1| DNA gyrase, A subunit [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 812 Score = 421 bits (1081), Expect = e-115, Method: Compositional matrix adjust. Identities = 266/761 (34%), Positives = 435/761 (57%), Gaps = 39/761 (5%) Query: 18 KAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSAR 77 + VS+ L + YL Y+LS I RAIPD RDG KPVHRRI+ A E+G + KKSAR Sbjct: 3 QQVSIEKELRKSYLEYSLSVIIGRAIPDARDGLKPVHRRIMFAQHELGNGYTRPPKKSAR 62 Query: 78 IVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMT 137 +VG+VIGK HPHGD +VYD+LVR+AQ F R PL+ GQGNFG+IDGD+AAA RYTE RM+ Sbjct: 63 VVGDVIGKYHPHGDSAVYDALVRMAQDFSMRDPLVDGQGNFGSIDGDAAAAMRYTEVRMS 122 Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197 ++A L +D++ VDFR Y+ EP V P+K PNLL NG+SGIAVGMAT+IP HN+ Sbjct: 123 RLAGEFLADIDKETVDFRPNYDNTLLEPSVLPTKVPNLLLNGSSGIAVGMATNIPPHNLG 182 Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257 E+C A L ++D P ++E L++++ GPDFPT G + + + ++Y GRG +VR + Sbjct: 183 ELCGALLHIVDEPGCTVEDLMDHVKGPDFPTAGFVYAG-QGLYDAYTTGRGTVKVRGKVE 241 Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFPK 316 +EE +G IV+ EIP+ + KS L+EKIA L+ ++I + D+RDES + +R+V+ K Sbjct: 242 IEERKKGLQAIVIREIPFALNKSSLVEKIAALVNERKIDGVADLRDESDRKGIRVVIDLK 301 Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376 R PD+++ +++ + +E+ F +NM + +G PQ++ L L+ +L HRREV+ RR+ Sbjct: 302 -RGTIPDIVVNALYKYTPLESSFGINM-LAVVGNRPQLLNLKQALEIFLEHRREVIIRRT 359 Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVDAILN 433 + ++ + R IL+GL IA NIDE++A+IR P K ++ RF+L+E Q AIL+ Sbjct: 360 RYDLRKAEARAHILEGLRIALDNIDEVVALIRASKTPQDAKDALMGRFTLSEAQAQAILD 419 Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493 +RL+ L LE ++ E + LL + E S+L + + + I EI E+++ F+ Sbjct: 420 MRLQRLTNLEHEKLIEEYNELLKKIEFFRSVLENPEVLRSVIREEIGELRDTFAT----- 474 Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSVD------LSALHF 545 +RRT E D ++ +I E + + +S RG+I+ +L ++ ++ +H Sbjct: 475 KRRTEVLE-EELDGIDIED-LIPDEDVVITLSRRGYIKRTTLDNYQQQRRGGKGIAGVHT 532 Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL--LIDLNHNQ--- 600 E D ++ L +LL + G+ + + + G + + + L+ L+ ++ Sbjct: 533 SEDDFVQDFLTTTNHQYLLLFTNHGRMHQIKVHRVPEGSRTAKGVHIANLVQLDKDELVT 592 Query: 601 DIVTAFVYDSTCKLLVVSSKGNAFIVEES--EIIANTRK-GKTFLKVSSEEKMKLVVKVT 657 +++T + L V+ +G +V+ S + A RK G + + ++++ +V +V Sbjct: 593 NVLTVREFAEDRYFLFVTRRG---MVKRSSASLYAKCRKTGLIAVGLRPDDELIMVREVD 649 Query: 658 GD-HVAVVGENRKLLIFSIDQIPEMSRG----KGVRLQSYKDGGISDVICFKICEGLTWI 712 H+ + + + F + + M R KG+ L+ KD ++ VI + + Sbjct: 650 EHCHIVLTTGDGMAIRFQCEDVRPMGRSATGVKGIALRG-KDRVVACVILAEEDTTSMIM 708 Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753 + + + L + RGGVG K P++G + + Sbjct: 709 SVSANGFGKRTKADLYRVQSRGGVGVKNFKVTPKTGDVIGA 749 >gi|261839476|gb|ACX99241.1| DNA gyrase subunit A [Helicobacter pylori 52] Length = 827 Score = 421 bits (1081), Expect = e-115, Method: Compositional matrix adjust. Identities = 243/610 (39%), Positives = 379/610 (62%), Gaps = 34/610 (5%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 +N+ V + ++EE YLAY++S I RA+PD RDG KPVHRRI++AM E+GL A+KK Sbjct: 10 KNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHELGLTSKVAYKK 69 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 SARIVG+VIGK HPHGD +VYD+LVR+AQ F R L+ GQGNFG+IDGD+AAA RYTEA Sbjct: 70 SARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDNAAAMRYTEA 129 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 +MT+ +E IL+ +D+D +DF Y++ EP + PS+ PNLL NG +GIAVGMATSIP H Sbjct: 130 KMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGIAVGMATSIPPH 189 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 + EI +A + +++NP ++++LE++ GPDFPTGGII + I+E+Y+ GRG +VRA Sbjct: 190 KIDEIIDALIHVLENPNAELDEILEFVKGPDFPTGGIIY-GKAGIIEAYKTGRGRVKVRA 248 Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVL 313 + VE+ + IV+ E+P+Q K++L+E+I++L K+I + ++RDES E +R+V+ Sbjct: 249 KVHVEKT-KNKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRDESDREGIRVVI 307 Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373 K ++ ++++ ++ L+ MET F + + + + P++ L +L+ +L HR+ ++ Sbjct: 308 ELKRDAM-SEIVLNHLYKLTTMETTFSIILLAI-YNKEPKIFTLLELLRLFLNHRKTIII 365 Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVDA 430 RR+ F ++ R IL+G LIA NIDEI+ +I+ P K ++ RF+L+E Q A Sbjct: 366 RRTIFELEKAKARAHILEGYLIALDNIDEIVQLIKTSQSPEVAKNALMERFTLSEIQSKA 425 Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490 IL +RL+ L LE +IK E NLL ++ +L S + + E+ EVKE FS Sbjct: 426 ILEMRLQRLTGLERDKIKEEYQNLLELISDLNGILKSEDRLNGVVKTELLEVKEQFSSP- 484 Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSVD-------LS 541 RRT E+ + + + +I EP+ V +S +G+++ LK + LS Sbjct: 485 ----RRT---EIQESYENIDIEDLIANEPMVVSMSYKGYVKRVDLKVYEKQNRGGKGKLS 537 Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDL 596 + E D ++ A+T D +L ++ G K Y +P + ++ G+A+ LI L Sbjct: 538 GSTY-EDDFIENFFVANTHDILLFITNKGQLYHLKVYKIPEASRIA---MGKAVVNLISL 593 Query: 597 NHNQDIVTAF 606 ++ I+ Sbjct: 594 APDEKIMATL 603 >gi|161621455|ref|NP_102478.2| DNA gyrase subunit A [Mesorhizobium loti MAFF303099] Length = 931 Score = 421 bits (1081), Expect = e-115, Method: Compositional matrix adjust. Identities = 256/712 (35%), Positives = 396/712 (55%), Gaps = 63/712 (8%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 ++ +S+ ++ YL+YA+S I RA+PD+RDG KPVHRRI++A E G + + KSA Sbjct: 17 IEPISIIEEMQSSYLSYAMSVIVSRALPDVRDGLKPVHRRILYAAHESGYHWNRKYVKSA 76 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R V +V+GK HPHGD S+YD+LVR+AQ + R PLI GQGNFG+IDGD AA RYTE+R+ Sbjct: 77 RPVADVMGKYHPHGDASIYDALVRMAQDWSLRVPLIDGQGNFGSIDGDPPAAMRYTESRL 136 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 T+VA +L+ +D+D VDF++TY+ D+EP V P++FPNLL NG+ GIAVGMAT+IP HN+ Sbjct: 137 TKVAHELLEDIDKDTVDFQETYDASDTEPKVLPARFPNLLVNGSGGIAVGMATNIPPHNL 196 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+C A+A+IDNP I + L+E I GPDFPTGGI++ R I +Y GRG +R + Sbjct: 197 GEVCNGAIAIIDNPAIDLPALMEIIPGPDFPTGGIVL-GRSGIYSAYSTGRGSIVMRGKV 255 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316 +E+ G I++TE+PYQV K+ +IEK+AEL+ KRI + DIRDES V+ Sbjct: 256 NIEQRGNDRESIIITEVPYQVNKASMIEKMAELVRDKRIEGISDIRDESDRQGYRVVIEL 315 Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376 R D+++ ++ + ++T F NM L+ G+ P+++ L +LK +++ R EV+ RR+ Sbjct: 316 KRDAVADVILNQLYRFTPLQTSFGANMVALNGGK-PELLTLTDMLKAFVSFREEVITRRT 374 Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP----VMVSR------------ 420 F ++ R +L GL IA NIDE+I +IR P+ +M R Sbjct: 375 KFLLRKARDRAHVLVGLAIAVANIDEVIKLIRTAPDPQTAREQLMERRWPAGDVESLILL 434 Query: 421 -------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467 ++L+E Q AIL LRL+ L L +I EL+++ AE +L+S Sbjct: 435 IDDPRHRINADGTYNLSEEQARAILELRLQRLTALGRDEIADELNSIGAEIVDYLDILSS 494 Query: 468 GKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNR 527 + + E+ V++ F RRT E++ + +I++E + V +S+ Sbjct: 495 RARVQQIVKDELAAVRDEFGTP-----RRT---ELTDGGADMEDEDLIQREDMVVTVSHS 546 Query: 528 GWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYT 574 G+I R+ + S + KE D + A+T +L S+ G K + Sbjct: 547 GYIKRVPLSLYRAQRRGGKGRSGMSTKEEDFVTRLFVANTHTPVLFFSSRGIVYKEKVWR 606 Query: 575 LPAGNLLSGRGHGEAIQLLIDLNHNQDIVT--AFVYDSTC----KLLVVSSKGNAFIVEE 628 LP GN S G+A+ ++ L + I T D T ++ +++G + Sbjct: 607 LPIGNPQS---RGKALINMLPLEQGERITTIMPLPEDETSWGELDVMFATTRGTVRRNKL 663 Query: 629 SEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH--VAVVGENRKLLIFSIDQI 678 S+ + R GK +K+ E L V+ D+ V + + + + FS+ + Sbjct: 664 SDFVQVNRNGKIAMKLEEEGDEILGVETCTDNDDVLLTASSGQCIRFSVGDV 715 >gi|258513373|ref|YP_003189595.1| DNA gyrase, A subunit [Desulfotomaculum acetoxidans DSM 771] gi|257777078|gb|ACV60972.1| DNA gyrase, A subunit [Desulfotomaculum acetoxidans DSM 771] Length = 811 Score = 421 bits (1081), Expect = e-115, Method: Compositional matrix adjust. Identities = 263/691 (38%), Positives = 398/691 (57%), Gaps = 30/691 (4%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 V ++L+ ++ Y+ YA+S I RA+PD+RDG KPVHRRII+AM +G+ A KK A Sbjct: 6 VVPINLKDEMKNSYMDYAMSVIVGRALPDVRDGLKPVHRRIIYAMHGLGMTPDKAHKKCA 65 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 IVGEV+ K HPHGD +VYD+LVR+AQ F RY L+ G GNFG++DGDSAAA RYTEARM Sbjct: 66 HIVGEVLAKYHPHGDVAVYDALVRMAQSFSIRYTLVDGHGNFGSVDGDSAAAMRYTEARM 125 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 T++A +L ++++ VDF Y+E EP V P++ PNLL NG+SGIAVGMAT+IP HN+ Sbjct: 126 TKIATEMLTDIEKETVDFIPNYDESIEEPTVLPARVPNLLINGSSGIAVGMATNIPPHNL 185 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ + + L+DNPE L++ + GPDFPT G I+ + I+ +Y GRG ++RA+ Sbjct: 186 AEVIDGVIMLVDNPEADSRTLMKAVKGPDFPTAGKIM-GVQGIISAYTTGRGSIKIRAQA 244 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFP 315 +EE+ G IVV EIPYQV K+RLIEKIAEL+ K+I + D+RDES + +RIV+ Sbjct: 245 EIEEMSGGKNRIVVNEIPYQVNKARLIEKIAELVRDKKIEGISDLRDESDRKGMRIVIEL 304 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 K R + P L++ ++ + M+ F + M L GR P V+ L +L +L H+++++ RR Sbjct: 305 K-RDVYPQLVLNQLYKHTKMQDSFGVIMLALVDGR-PNVLNLRDMLYYYLEHQKDIIIRR 362 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAIL 432 ++F ++ + R I++GL IA N+DE+I IR+ K +V +F LTE Q AIL Sbjct: 363 TTFDLKKAEARAHIVEGLRIALANLDEVINTIRSSQTVEIAKQGLVEKFLLTEIQAQAIL 422 Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492 +RL+ L LE +++ E +L+ + ++++L+ + I E+ E+++ ++ Sbjct: 423 EMRLQRLTGLEIEKLEQEYRDLMEKIAYLEAILSDEGKILAIIKDELLEIRKKYAD---- 478 Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALH 544 +RRT +S D A + +I +E + + I+ G+I RS K +SA+ Sbjct: 479 -KRRTV---ISDEDTAFDVEDLIAEEDMVITITRNGYIKRLPLDTYRSQKRGGRGISAMG 534 Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEAIQLLIDLNHNQDI 602 KE D LK T IL + GK Y L + +GR G AI L+ + + + Sbjct: 535 VKEKDFLKHLFITSTHHYILFFTNKGKVYRLKVHEIPEAGRQSKGTAIINLLFVGTEEKV 594 Query: 603 VTAFVYDSTCK---LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD 659 T K L + + G +E + R G L + + + V G Sbjct: 595 TTVIPVKEFNKDEFLFMCTKNGIVKKTSLNEFDTSRRDGIIALTLDDHDDLVDVRLTNGQ 654 Query: 660 HVAVVGENRKLLI-FSIDQIPEMSR-GKGVR 688 ++G + L I FS D + ++ R KGVR Sbjct: 655 EEIIIGTQKGLAIRFSEDDVRKLGRIAKGVR 685 >gi|125974846|ref|YP_001038756.1| DNA gyrase subunit A [Clostridium thermocellum ATCC 27405] gi|256003897|ref|ZP_05428884.1| DNA gyrase, A subunit [Clostridium thermocellum DSM 2360] gi|281418699|ref|ZP_06249718.1| DNA gyrase, A subunit [Clostridium thermocellum JW20] gi|125715071|gb|ABN53563.1| DNA gyrase subunit A [Clostridium thermocellum ATCC 27405] gi|255992235|gb|EEU02330.1| DNA gyrase, A subunit [Clostridium thermocellum DSM 2360] gi|281407783|gb|EFB38042.1| DNA gyrase, A subunit [Clostridium thermocellum JW20] gi|316941968|gb|ADU76002.1| DNA gyrase, A subunit [Clostridium thermocellum DSM 1313] Length = 827 Score = 421 bits (1081), Expect = e-115, Method: Compositional matrix adjust. Identities = 245/656 (37%), Positives = 391/656 (59%), Gaps = 36/656 (5%) Query: 6 ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65 +S++ + ++ + V++ +++ ++ YA+S I +RA+PD+RDG KPVHRRI++AM +G Sbjct: 1 MSDTKDVKQQRIIPVNIETEMKKSFIDYAMSVIVDRALPDVRDGLKPVHRRILYAMYGLG 60 Query: 66 LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125 A++K A VGEV+GK HPHGD +VYDSLVR+AQ F RY I G GNFG+IDGD Sbjct: 61 FTPDKAYRKCATTVGEVLGKYHPHGDAAVYDSLVRMAQNFSLRYTQIDGHGNFGSIDGDP 120 Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185 AA RYTEAR+++++ +L+ +++D VDF+ ++E EPVV PS+FPNLL NG+SGIAV Sbjct: 121 PAAMRYTEARLSKISMEMLRDINKDTVDFKPNFDEHHMEPVVLPSRFPNLLVNGSSGIAV 180 Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245 GMAT+IP HN+ E+ + + +ID+P +++++L++ I GPDFPT GIIV ++ I ++Y Sbjct: 181 GMATNIPPHNLVEVIDGVIKVIDDPNVTLDELMKIIKGPDFPTAGIIV-GKQGIRDAYAT 239 Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305 G+G VRA +E++ IVVTE+PYQV K++LIE+IAEL+ KRI + D+RDES Sbjct: 240 GKGKIIVRAVATIEQMPGNKQRIVVTELPYQVNKAKLIERIAELVKEKRIDSISDLRDES 299 Query: 306 AED-VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGR----VPQVMPLDGI 360 +D +RIV+ K + + ++++ ++ + M+ F +NM L + P+V+ L Sbjct: 300 DKDGMRIVIELK-KDANANVVLNQLYKNTQMQDAFNVNMVALVLNNEKKFEPRVLNLRQA 358 Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAII---RNEDKPKPVM 417 + ++ H+ +V+ RR+ F + + R IL+GL IA N+DE+I II RNE K + Sbjct: 359 IDYYIKHQEDVIVRRTKFDLDKAEARAHILEGLRIAIDNLDEVINIIRSSRNESDAKEAL 418 Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477 + RF +E Q AI+++RL L LE +I +E LL E + +L + + I Sbjct: 419 IQRFGFSEKQAQAIVDMRLGRLTALEREKIDNEYKELLKEIKYYKDVLANKSMVLDIIKK 478 Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHS 537 E+ E+K+ + RRT + D+ ++ +IE E V +++ G+I+ L + + Sbjct: 479 ELEEIKQKYGDE-----RRTKI--IPDEDEIEIED-LIEVEENVVTLTHFGYIKRLPTST 530 Query: 538 VD--------LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHG 587 + L +E D ++ T D IL + GK Y L + +GR G Sbjct: 531 YKSQKRGGKGVIGLSTREEDFVEQLFITSTHDYILFFTNKGKVYRLKTYEIPEAGRQAKG 590 Query: 588 EAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIA--NTRKG 638 AI L+ L+ N+ I T Y L + + G IV++++++ N RKG Sbjct: 591 TAIVNLLQLDQNEKITTVIPISEYKEGLYLFMATKHG---IVKKTDLMEFDNIRKG 643 >gi|20806553|ref|NP_621724.1| DNA gyrase (topoisomerase II) A subunit [Thermoanaerobacter tengcongensis MB4] gi|20514991|gb|AAM23328.1| DNA gyrase (topoisomerase II) A subunit [Thermoanaerobacter tengcongensis MB4] Length = 807 Score = 420 bits (1080), Expect = e-115, Method: Compositional matrix adjust. Identities = 244/624 (39%), Positives = 381/624 (61%), Gaps = 29/624 (4%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 + V V + + Y+ YA+S I RA+PD+RDG KPVHRRI++AM+EMGL +KK Sbjct: 6 DKVIPVDIEDEMRNSYIDYAMSVIVGRALPDVRDGLKPVHRRILYAMNEMGLTPDKPYKK 65 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 S +VGEV+GK HPHGD +VYD+LVRLAQ F R LI G GNFG+IDGD AA RYTEA Sbjct: 66 SVAVVGEVLGKYHPHGDAAVYDTLVRLAQDFSMREVLIDGHGNFGSIDGDPPAAMRYTEA 125 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 R++++A +L ++++ VDF ++E EPVV PS+FPNLL NG+ GIAVGMAT+IP H Sbjct: 126 RLSRIALEMLTDINKETVDFVPNFDETLKEPVVLPSRFPNLLVNGSQGIAVGMATNIPPH 185 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 N+ E+ + +A IDNP I++++L++YI GPDFPTGGII+ R+ I E+Y GRG VRA Sbjct: 186 NLAEVIDGIVAYIDNPYITVDELMKYIKGPDFPTGGIIL-GRDGIKETYETGRGKIIVRA 244 Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314 + +EE +G IV+TEIPY V K++LIEKIAEL+ K+I + D+RDES + ++ Sbjct: 245 KAEIEE-HKGKTRIVITEIPYMVLKAKLIEKIAELVHNKQIEGIADLRDESDRNGMKIVI 303 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 R ++P +++ ++M + M+ F M L G P+++ L I+++++ H+ +V+ R Sbjct: 304 ELKRDVNPKVILNKLYMHTQMQQTFGAIMLALVDGE-PKILNLKQIIEKYVDHQADVVTR 362 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLTENQVDAI 431 R+ F ++ + R IL+GL IA IDE+I IIR+ E K ++ RF L++ Q AI Sbjct: 363 RTKFDLKKAEERAHILEGLKIALDYIDEVINIIRSSKTEAIAKENLMKRFGLSDKQAQAI 422 Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491 +++RL L LE +++ EL L+ + +++ +L ++ I E+ E+K ++ Sbjct: 423 VDMRLGRLTGLERQKVEDELKELIEKIKELKEILADERKVLEIIKKELLEIKNKYASP-- 480 Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSAL 543 R+T V++ ++ + +++ E + V +++ G+I +S K + + Sbjct: 481 ---RKTVI--VAKEEELDFED-LVQLEDVVVTMTHYGYIKRMPLDTYKSQKRGGKGILGI 534 Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEAIQLLIDLNHNQD 601 +E D ++ T DR+L + GK Y+L ++ SGR G AI LI ++ + Sbjct: 535 STREDDFVEDIFITTTHDRLLFFTNKGKVYSLRTIDIPESGRQAKGTAIVNLIQISQGEK 594 Query: 602 IVTAFV----YDSTCKLLVVSSKG 621 VTA + D +L+ + KG Sbjct: 595 -VTAVIPLKKSDDIKYVLMCTKKG 617 >gi|92114290|ref|YP_574218.1| DNA gyrase subunit A [Chromohalobacter salexigens DSM 3043] gi|91797380|gb|ABE59519.1| DNA gyrase subunit A [Chromohalobacter salexigens DSM 3043] Length = 907 Score = 420 bits (1080), Expect = e-115, Method: Compositional matrix adjust. Identities = 282/762 (37%), Positives = 422/762 (55%), Gaps = 99/762 (12%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 V++ L++ YL YA+S I RA+PD+RDG KPVHRR++ AM E+G D+ A+KKSAR+V Sbjct: 11 VNIEDELKQSYLDYAMSVIIGRALPDVRDGLKPVHRRVLFAMHELGNDWNKAYKKSARVV 70 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGD +VYD++VR+AQ F RY L+ GQGNFG+IDGDSAAA RYTE RM+++ Sbjct: 71 GDVIGKYHPHGDSAVYDTIVRMAQEFSMRYVLVDGQGNFGSIDGDSAAAMRYTEVRMSRL 130 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A +L +++D VD+ D Y+ + P V P+K PNLL NG SGIAVGMAT+IP HN++EI Sbjct: 131 AHELLADLEKDTVDWVDNYDGTERIPEVLPTKVPNLLVNGASGIAVGMATNIPPHNMREI 190 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 + LALID+ +SI+ L+ YI GPDFPTGGII R I+E+YR GRG VRAR +E Sbjct: 191 IDGCLALIDDYTLSIDDLMAYIPGPDFPTGGII-NGRAGILEAYRTGRGRIYVRARHTIE 249 Query: 260 EVGR-GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFPKN 317 + G I+VTE+PYQV K+RLIEKIAEL+ KRI + ++RDES E +R+V+ K Sbjct: 250 HDEKTGRDHIIVTELPYQVNKARLIEKIAELVKDKRIEGIAELRDESDKEGLRVVIEVK- 308 Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377 R D+++ ++F + ++T F +NM L G+ P+++ L IL+ ++ HRREV+ RR+ Sbjct: 309 RGESGDVVVNNLFAHTQLQTVFGINMVALDNGQ-PKILNLKEILEAFVRHRREVVTRRTL 367 Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSR-------------- 420 F ++ R IL+GL +A NIDE+I +I+ + + K +V+R Sbjct: 368 FELKKARDRGHILEGLAVAISNIDEVIELIKASPSAAEAKEKLVARAWRPGQVTDMLERA 427 Query: 421 ----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458 + L+ Q AIL LRL L LE ++ E ++L Sbjct: 428 GATSCKPEDLEEGYGLAEGQNEYRLSPAQAQAILELRLHRLTGLETEKLLDEYLSILKRI 487 Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518 +++ +L S ++ + I E++ +++ + G R T + S D + +I +E Sbjct: 488 AELNEILASPERLLDVIREELQAIRDQY------GDERKTEIQASHLDLTI--EDLINEE 539 Query: 519 PITVVISNRGWIRS--LKSHSVDL------SALHFKEGDSLKIALHAHTTDRILLLSTDG 570 + V IS G+ ++ L + SA K+ D ++ L A T D +LL S G Sbjct: 540 DMVVTISRSGYAKTQPLSDYQAQRRGGRGKSATTMKDEDIIEHLLVASTHDTVLLFSNRG 599 Query: 571 KAYTL---------------PAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615 K Y L P NLL GEAI ++ + ++ ++++ +T K Sbjct: 600 KVYWLKVYEMPNASRGSRGKPLINLLP-LDEGEAINAILPVREYRE--DSYIFFATAKGT 656 Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV---VKVTGDHVAVVGENRKLLI 672 V + F + + + + EE +LV + DH ++ N K + Sbjct: 657 VKRTSLEQF---------SRPRSVGLIAIDLEEDDRLVGAAITSGNDHAMLLSSNGKAIR 707 Query: 673 FSIDQIPEMSRG----KGVRLQSYKDGGISDVICFKICEGLT 710 F + M R +G+RLQ G ++VI I + LT Sbjct: 708 FEEGNVRAMGRTARGVRGMRLQ-----GGAEVISLIIPQSLT 744 >gi|328543836|ref|YP_004303945.1| DNA gyrase, A subunit [polymorphum gilvum SL003B-26A1] gi|326413580|gb|ADZ70643.1| DNA gyrase, A subunit [Polymorphum gilvum SL003B-26A1] Length = 912 Score = 420 bits (1080), Expect = e-115, Method: Compositional matrix adjust. Identities = 260/683 (38%), Positives = 385/683 (56%), Gaps = 73/683 (10%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 +++ VS+ ++ YL YA+S I RA+PD+RDG KPVHRRI+++M E G ++ ++KS Sbjct: 16 DIRPVSITDEMKRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYSMHENGYEWNKPYRKS 75 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 AR+VG+V+GK HPHGD ++YD+LVR+AQ F R PLI GQGNFG++DGD AAA RYTE R Sbjct: 76 ARVVGDVMGKYHPHGDSAIYDALVRMAQNFSLRLPLIDGQGNFGSVDGDPAAAMRYTECR 135 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 + +VA +L +D+D VDF+D Y+ +SEPVV P+KFPNLL NG GIAVGMAT+IP HN Sbjct: 136 LQKVAHKLLDDIDKDTVDFQDNYDNSESEPVVLPAKFPNLLVNGAGGIAVGMATNIPPHN 195 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 + E+ +AA+A+++NP +++ +LLE I GPDFPTGGII+ R I +Y GRG +R + Sbjct: 196 LGEVIDAAIAMMENPAMTLNELLEIIPGPDFPTGGIIL-GRSGIRSAYETGRGSVVMRGK 254 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE-DVRIVLF 314 VEE+ G ++V+EIPYQV K+ +IEKIAEL+ KRI + DIRDES +R+V+ Sbjct: 255 VEVEEIRAGREALIVSEIPYQVNKATMIEKIAELVREKRIEGISDIRDESDRLGMRVVIE 314 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K ++ D+++ ++ S ++T F NM L+ GR P+ M L +LK ++A R EV+ R Sbjct: 315 LKKDAV-ADVILNQLYRFSALQTSFGCNMVALNGGR-PEQMLLSDMLKAFIAFREEVIGR 372 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK-----------PVM------ 417 R+ F + R +L GL IA NIDE+I +IR P P M Sbjct: 373 RTRFLLAKARDRAHVLVGLAIAVANIDEVIHLIRTAPDPATARAQLMQRNWPAMDVAPLI 432 Query: 418 ------------VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLL 465 + L+E Q AIL+LRL+ L L +I EL+ L E +L Sbjct: 433 LLIDDPRHTVNEDGTYRLSEEQARAILDLRLQRLTALGRDEIGDELNKLGEEIADYLEIL 492 Query: 466 NSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVI 524 S + I E+ E++ F+ R+T E A L+ + +I++E + V + Sbjct: 493 RSRPRIQQIIREELLEIRNEFATP-----RKTEIVE----GGADLEDEDLIQREDMVVTV 543 Query: 525 SNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----K 571 S+ G+I R+ + S + K+ D + A+T +L S+ G K Sbjct: 544 SHTGYIKRVPLATYRAQRRGGKGRSGMATKDEDFVTRLFVANTHTPVLFFSSRGIVYKMK 603 Query: 572 AYTLPAGNLLSGRGH----------GEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKG 621 + LP G S RG GE I ++ L N+D + ++ +++G Sbjct: 604 VWRLPLGGPTS-RGKALVNLLPLEAGEQISSIMPLPENEDSW------ADLDVMFATTRG 656 Query: 622 NAFIVEESEIIANTRKGKTFLKV 644 + S+ R GK +K+ Sbjct: 657 TVRRNKLSDFTQVNRNGKIAMKL 679 >gi|86130322|ref|ZP_01048922.1| DNA gyrase subunit A [Dokdonia donghaensis MED134] gi|85818997|gb|EAQ40156.1| DNA gyrase subunit A [Dokdonia donghaensis MED134] Length = 848 Score = 420 bits (1080), Expect = e-115, Method: Compositional matrix adjust. Identities = 232/609 (38%), Positives = 374/609 (61%), Gaps = 31/609 (5%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 E + ++++ ++ Y+ Y++S I RA+PD+RDG KPVHRR+++ M E+G+ +A KK Sbjct: 5 EKLISINIEDEMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMHELGIRASSAHKK 64 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 SARIVGEV+GK HPHGD SVYD++VR+AQ + RY L+ GQGNFG++DGDS AA RYTEA Sbjct: 65 SARIVGEVLGKYHPHGDTSVYDAMVRMAQEWSLRYMLVDGQGNFGSVDGDSPAAMRYTEA 124 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 RM +++E +L +++D VD + +++ EP V P++ P LL NG SGIAVGMAT++P H Sbjct: 125 RMRKISEDMLADIEKDTVDHQLNFDDTLKEPTVLPTRVPGLLINGASGIAVGMATNMPPH 184 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 N+ E+ + A IDN +++I++L+E++ PDFPTGG I + + E+++ GRG +RA Sbjct: 185 NLSEVVDGIHAYIDNNDVTIDELMEHVKAPDFPTGGTIY-GYDGVREAFKTGRGRVVMRA 243 Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314 + EEV +G CI+VTEIPYQV K+ +I+K A++I K+I + IRDES + +++ Sbjct: 244 KAEFEEV-KGRECIIVTEIPYQVNKADMIKKTADMINDKKIEGISAIRDESDRNGMRIVY 302 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 R P++++ +F + +++ F +N L GR P+++ L ++ ++ HR EV+ R Sbjct: 303 VIKRDAVPNIVLNKLFKYTALQSSFSVNNIALVNGR-PEMLNLKDMIHHFVEHRHEVVVR 361 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAI 431 R+ F ++ + R IL+GL+IA NIDE+IAIIR N D+ + ++ RF L+E Q AI Sbjct: 362 RTEFELKKAEARAHILEGLIIASDNIDEVIAIIRASANGDEARQNLIERFKLSEIQAKAI 421 Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491 + +RLR L LE+ +++SE + ++ E + +L +++ + I E++E+K+ + Sbjct: 422 VEMRLRQLTGLEQDKLRSEYEEIMKTIEDLKDILAKKERRMSIIREELQEIKDKY----- 476 Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSH------SVDLSAL 543 G R + E + D + +I + + + ISN G+I+ SL + V A Sbjct: 477 -GDERRSIIEYAGGDVSITD--LIPDKKVVITISNAGYIKRTSLTEYKTQNRGGVGTKAS 533 Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKA-----YTLPAGNLLSGRGHGEAIQLLIDLNH 598 + D L+ +L + GK + +P G+ S G AIQ LI++ Sbjct: 534 TTRNEDFLEHLFVGTNHQYMLFFTQKGKCFWMRVFEIPEGSKTS---KGRAIQNLINIEQ 590 Query: 599 NQDIVTAFV 607 + D V AFV Sbjct: 591 D-DEVKAFV 598 >gi|325103800|ref|YP_004273454.1| DNA gyrase subunit A [Pedobacter saltans DSM 12145] gi|324972648|gb|ADY51632.1| DNA gyrase subunit A [Pedobacter saltans DSM 12145] Length = 859 Score = 420 bits (1080), Expect = e-115, Method: Compositional matrix adjust. Identities = 233/611 (38%), Positives = 369/611 (60%), Gaps = 29/611 (4%) Query: 8 NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67 N + +E+ + +++ ++ Y+ Y++S I RA+PD+RDG KPVHRR+++ M +GL Sbjct: 7 NQSENIEDRIIPINIEEEMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMQGLGLQ 66 Query: 68 FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAA 127 KKSAR+VGEV+GK HPHGD SVYD++VR+AQP+ RY LI GQGNFG+IDGD AA Sbjct: 67 SNKPHKKSARVVGEVLGKYHPHGDSSVYDTMVRMAQPWSLRYMLIDGQGNFGSIDGDGAA 126 Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187 A RYTEAR+ ++AE +L +++D VDFR +++ EP V P++ PNLL NG+SGIAVGM Sbjct: 127 AMRYTEARLRKIAEEMLIDINKDTVDFRLNFDDSLEEPTVLPARIPNLLVNGSSGIAVGM 186 Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247 AT+I HN+ E+ +A +A ID+ EI+I+ L++++ PDFPTGGII E + E++ GR Sbjct: 187 ATNIAPHNLSEVIDATIAYIDDKEIAIQDLMKHVKAPDFPTGGIIY-GYEGVREAFETGR 245 Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307 G +RA+ +E I+VTEIPYQV K+++IE+ AEL+ K+I + +IRDES Sbjct: 246 GRIVMRAKAEIESQSNEREKIIVTEIPYQVNKAQMIERTAELVNEKKIEGISEIRDESDR 305 Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367 D +++ R + +++ +++ + ++T F +N L GR P ++ L ++ ++ H Sbjct: 306 DGLRIVYEIKRDANAAIVLNNLYKYTALQTSFSVNNIALVHGR-PMLLNLKDMIVHFVDH 364 Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLT 424 R EV+ RR+ F + ++R IL+GLLIA ++DE+I++IRN P ++S+F L+ Sbjct: 365 RHEVVVRRTKFELAEAEKRAHILEGLLIALDHLDEVISLIRNSSTPDEAREGLMSKFGLS 424 Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484 + Q AIL++ LR L LE +IK E +L+ + E + S+L + + I E+ EVKE Sbjct: 425 DIQARAILDMTLRRLTGLERDKIKEEYADLMKQIEYLKSVLADESLRMSIIKEELVEVKE 484 Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSH 536 + RRT E+ + + + IE E + + IS+ G+I R+ Sbjct: 485 AYGDE-----RRT---EIVHSAAELMTEDFIEDENVVITISHEGYIKRTPLTEYRTQGRG 536 Query: 537 SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL-----PAGNLLSGRGHGEAIQ 591 + ++ D ++ A + +L + GK Y L P G+ S G AIQ Sbjct: 537 GKGAIGSNSRDEDFIEHIFVASNHNYLLFFTDQGKCYWLRVFEIPEGSRTS---KGRAIQ 593 Query: 592 LLIDLNHNQDI 602 +I+++ + I Sbjct: 594 NIINIDKEEKI 604 >gi|319408726|emb|CBI82383.1| DNA gyrase subunit A [Bartonella schoenbuchensis R1] Length = 927 Score = 420 bits (1080), Expect = e-115, Method: Compositional matrix adjust. Identities = 256/712 (35%), Positives = 394/712 (55%), Gaps = 63/712 (8%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 ++ VS+ ++ YL YA+S I RA+PD+RDG KPVHRRI+HAM+EMGL F +++KSA Sbjct: 16 IEPVSIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAMNEMGLSFNKSYRKSA 75 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 +VGEV+GK HPHGD S+YD+LVR+AQ F R PLI GQGNFG+IDGD AA RYTE R+ Sbjct: 76 GVVGEVMGKFHPHGDASIYDALVRMAQDFSLRNPLIDGQGNFGSIDGDPPAAMRYTECRL 135 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 +++E +L +D+D VDF+D Y+ + EP+V P++FPNLL NG+ GIAVGMAT+IP HN+ Sbjct: 136 EKISEELLTDIDKDTVDFQDNYDGREREPMVLPARFPNLLVNGSGGIAVGMATNIPPHNL 195 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ + +ALID+P I+++++++ I GPDFPTGGII+ S I +Y GRG +RA+ Sbjct: 196 GEVVDGCIALIDDPSITLDEMIKIIPGPDFPTGGIILGS-SGIRSAYETGRGSIIMRAKV 254 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316 +EE+ I+V+EIPYQ+ K+ +IEKIAEL+ KRI + D+RDES D V+ Sbjct: 255 DIEEIRNNRQAIIVSEIPYQINKATMIEKIAELVRDKRIDGVSDLRDESDRDGYRVVIEL 314 Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376 R D+++ ++ + ++ F NM L+ G+ P+ M L IL+ +++ R EV+ RR+ Sbjct: 315 KREAVADVVLNQLYRYTPLQASFGCNMVALNGGK-PEQMTLLDILRAFVSFREEVVSRRT 373 Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK-----------------PVMV- 418 + ++ R +L GL IA NIDEIIA+IR P+ P++ Sbjct: 374 KYLLRRARERAHVLVGLAIAVANIDEIIALIRKASDPQIARAQLMERRWLAVDIAPLIKL 433 Query: 419 -----------SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467 + + L+E Q AIL LRL+ L L +I EL+ + + +L S Sbjct: 434 IDDPRHIIHEDNTYHLSEEQARAILELRLQRLTALGRDEIADELNKIGVDITDYLDILAS 493 Query: 468 GKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNR 527 + + E+ ++E+F+ RRT F AD + + +I E + V +S+ Sbjct: 494 RSRIMGIVKDELNALREVFATP-----RRTVFG-FGSADMDS--EDLIAPEEMVVTVSHS 545 Query: 528 GWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYT 574 G+I R+ + S + K+ D + A+T +L S+ G K + Sbjct: 546 GYIKRVPLNTYRAQRRGGKGRSGMATKDEDFVTRLFVANTHTPVLFFSSRGIVYKEKVWR 605 Query: 575 LPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK------LLVVSSKGNAFIVEE 628 LP G + + G A+ ++ L + I T K ++ + +G + Sbjct: 606 LPIG---TPQSRGRALINMLPLQQGERITTIMPLPDDEKDWGKLDVMFATMRGTVRRNKL 662 Query: 629 SEIIANTRKGKTFLKVSSEEKMKLVVKVTG--DHVAVVGENRKLLIFSIDQI 678 S+ + R GK +K E L V+ D V + N + + F + + Sbjct: 663 SDFVQVNRNGKIAMKFGEEGDEILSVETCTEYDDVVLTTANGQCIRFPVSDV 714 >gi|15612570|ref|NP_240873.1| DNA gyrase subunit A [Bacillus halodurans C-125] gi|4033397|sp|O50628|GYRA_BACHD RecName: Full=DNA gyrase subunit A gi|2760178|dbj|BAA24188.1| A subunit of DNA gyrase [Bacillus sp.] gi|5672653|dbj|BAA82691.1| 76%-identity [Bacillus halodurans] gi|10172619|dbj|BAB03726.1| DNA gyrase subunit A [Bacillus halodurans C-125] Length = 833 Score = 420 bits (1080), Expect = e-115, Method: Compositional matrix adjust. Identities = 243/676 (35%), Positives = 404/676 (59%), Gaps = 29/676 (4%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 + VK +++ ++ ++ YA+S I RA+PD+RDG KPVHRRI++AM+E+G+ A+K Sbjct: 6 QSRVKEINISQEMKTSFMDYAMSVIVSRALPDVRDGMKPVHRRILYAMNELGMTSDKAYK 65 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSARIVGEVIGK HPHGD +VY+++VR+AQ F RY L+ G GNFG+IDGD+AAA RYTE Sbjct: 66 KSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSYRYMLVDGHGNFGSIDGDAAAAMRYTE 125 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 ARM++++ +++ +++D +D++D Y+ + EPVV PS+FPNLL NG SGIAVGMAT+IP Sbjct: 126 ARMSKISMELVRDINKDTIDYQDNYDGSEKEPVVMPSRFPNLLVNGASGIAVGMATNIPP 185 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 H + E+ + LAL NP+IS+ +L+E+I GPDFPTG I+ R I ++Y+ GRG +R Sbjct: 186 HQLGEVIDGVLALSKNPDISVPELMEHIPGPDFPTGAEIL-GRSGIRKAYQTGRGSITLR 244 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313 A+ +EE G I+V EIPYQV K++LIEKIAEL+ K+I + D+RDES + ++ Sbjct: 245 AKTEIEE-HHGKQRIIVHEIPYQVNKAKLIEKIAELVRDKKIDGITDLRDESDRNGMRIV 303 Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373 + + ++L+ +++ + ++T F +N+ L G+ P+V+ L L+ +LAH+ V+ Sbjct: 304 IEVRKDANANVLLNNLYKQTALQTSFGINLLALVEGQ-PKVLNLKECLEHYLAHQVIVIR 362 Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVDA 430 RR++F ++ + R IL+GL IA ++DE+I++IR+ + ++ RF L+ Q A Sbjct: 363 RRTAFELRKAEARAHILEGLRIALDHLDEVISLIRSSQTTEIARNGLMERFELSYEQAQA 422 Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490 IL++RL+ L LE +I++E L+ ++ ++L ++ + I E+ E+KE ++ Sbjct: 423 ILDMRLQRLTGLERDKIEAEYKELIERIAELKAILADHEKVLDIIREELLELKEKYNDE- 481 Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSA 542 R+T +S ++ + +I ++ + + +++ G+I RS K + Sbjct: 482 ----RKTA---ISASEDMFEDEDLIPRQNVVITLTHHGYIKRLPISTYRSQKRGGRGIQG 534 Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQ 600 + E D ++ ++ IL + GK Y L + L G I L+ + ++ Sbjct: 535 MGTNEDDFVQHLFTTNSHHTILFFTNKGKVYRLKGYEIPELGRTAKGIPIINLLQIEQDE 594 Query: 601 DIVTAFVYDSTCK---LLVVSSKGNAFIVEESEIIANTRKGKTF-LKVSSEEKMKLVVKV 656 I T + + L ++ G A + S AN R+G F + + +++ V Sbjct: 595 YISTIIPIEEFTEDHYLFFMTKDGIAKRTQLSS-FANIRRGGLFAINLREGDELHGVRLT 653 Query: 657 TGDHVAVVGENRKLLI 672 GD +VG + + I Sbjct: 654 NGDKEVIVGTRQGMAI 669 >gi|319405587|emb|CBI79207.1| DNA gyrase subunit A [Bartonella sp. AR 15-3] Length = 922 Score = 420 bits (1080), Expect = e-115, Method: Compositional matrix adjust. Identities = 268/756 (35%), Positives = 410/756 (54%), Gaps = 66/756 (8%) Query: 3 VDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62 D + S V ++ VS+ ++ YL YA+S I RA+PD+RDG KPVHRRI++AM+ Sbjct: 2 TDLTTQSEYDVLTGIEPVSIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYAMN 61 Query: 63 EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122 EMGL F +++KSA +VGEV+GK HPHGD S+YD+LVR+AQ F R PLI GQGNFG++D Sbjct: 62 EMGLSFNKSYRKSAGVVGEVMGKFHPHGDASIYDALVRMAQDFSLRNPLIDGQGNFGSVD 121 Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182 GD AA RYTE R+ +VAE +L +D++ VDF+D Y+ + EP+V P++FPNLL NG+ G Sbjct: 122 GDPPAAMRYTECRLEKVAEELLADIDKETVDFQDNYDGREREPMVLPARFPNLLVNGSGG 181 Query: 183 IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242 IAVGMAT+IP HN+ E+ + +ALIDNP I++++++E I GPDFPTGGII+ R I + Sbjct: 182 IAVGMATNIPPHNLGEVIDGCIALIDNPTITLDEIIEIIPGPDFPTGGIIL-GRSGIRSA 240 Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302 Y GRG +RA+ +EE+ I+V+EIPYQ+ K+ +IEKIAEL+ KRI + D+R Sbjct: 241 YETGRGSIIMRAKVDIEEIRNNRQAIIVSEIPYQINKATMIEKIAELVRDKRIEGISDLR 300 Query: 303 DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362 DES D V+ R D+++ ++ + ++T F NM L+ G+ P+ M L +L+ Sbjct: 301 DESDRDGYRVVIELKREAVADIVLNQLYRYTPLQTSFGCNMVALNGGK-PEQMTLLDMLR 359 Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV---- 418 +++ R EV+ RR+ + ++ R +L GL IA NIDEIIA+IR P+ + Sbjct: 360 AFVSFREEVVSRRTKYLLRKARERAHVLVGLAIAVANIDEIIALIRTAPDPQTARIQLME 419 Query: 419 -------------------------SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453 + ++L+E Q AIL LRL+ L L +I EL+ Sbjct: 420 RRWLAADVASLIKLIDDPRHIIHEDNTYNLSEEQARAILELRLQRLTALGRDEIADELNK 479 Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513 + + +L S + + E+ +++ F RRT F + + Sbjct: 480 IGVDITDYLDVLASRLRIMGIVKDELSTLRKEFVTP-----RRTIF---GFGNAEMDNED 531 Query: 514 MIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565 +I E + V +S+ G+I R+ + S + K+ D + ++T +L Sbjct: 532 LIVPEDMVVTVSHSGYIKRVPLSTYRAQRRGGKGRSGMSTKDEDFVTRLFVSNTHTSVLF 591 Query: 566 LSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD------STCKL 614 S+ G K + LP G + + G A+ ++ L + + T S + Sbjct: 592 FSSRGIVYKEKVWRLPIG---TPQSRGRALVNMLPLQEKERVTTIMPLPEDEASWSKLDV 648 Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIF 673 + +++G + S+ I R GK +K+ E+++ V T D V + N + + F Sbjct: 649 MFATTRGTVRRNKLSDFIQVNRNGKIAMKLDDEDEILSVETCTERDDVVLTTANGQCIRF 708 Query: 674 S-IDQIPEMSRGK-GVRLQSYKDGGISDVICFKICE 707 ID M R GVR + DG VI I E Sbjct: 709 PVIDVRVFMGRNSVGVRGINMVDG--DKVISMTILE 742 >gi|317012514|gb|ADU83122.1| DNA gyrase subunit A [Helicobacter pylori Lithuania75] Length = 828 Score = 420 bits (1080), Expect = e-115, Method: Compositional matrix adjust. Identities = 245/610 (40%), Positives = 377/610 (61%), Gaps = 34/610 (5%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 +N+ V + ++EE YLAY++S I RA+PD RDG KPVHRRI++AM E+GL A+KK Sbjct: 10 KNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHELGLTSKVAYKK 69 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 SARIVG+VIGK HPHGD +VYD+LVR+AQ F R L+ GQGNFG+IDGD+AAA RYTEA Sbjct: 70 SARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDNAAAMRYTEA 129 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 RMT+ +E IL+ +D+D +DF Y++ EP + PS+ PNLL NG +GIAVGMATSIP H Sbjct: 130 RMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGIAVGMATSIPPH 189 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 + EI +A + +++NP ++++LE++ GPDFPTGGII + I+E+Y+ GRG +VRA Sbjct: 190 RMDEIIDALVHVLENPNTGLDEILEFVKGPDFPTGGIIY-GKAGIIEAYKTGRGRVKVRA 248 Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVL 313 + VE+ + IV+ E+P+Q K++L+E+I++L K+I + ++RDES E +R+V+ Sbjct: 249 KVHVEKT-KNKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRDESDREGIRVVI 307 Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373 K ++ ++++ ++ L+ MET F + + + + P++ L +L+ +L HR+ ++ Sbjct: 308 ELKRDAM-SEIVLNHLYKLTTMETTFSIILLAI-YNKEPKIFTLLELLRLFLNHRKTIII 365 Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVDA 430 RR+ F ++ R IL+G LIA NIDEI+ +I+ P K ++ RF+L+E Q A Sbjct: 366 RRTIFELEKAKARAHILEGYLIALDNIDEIVQLIKTSPSPEAAKNALMERFTLSEIQSKA 425 Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490 IL +RL+ L LE +IK E NLL ++ +L S + + E+ EVKE FS Sbjct: 426 ILEMRLQRLTGLERDKIKEEYQNLLELIADLNGILRSEDRLNGVVKTELLEVKEQFSSP- 484 Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSVD-------LS 541 RRT EV + +I EP+ V +S +G+++ LK + LS Sbjct: 485 ----RRTEIQEVYENIDI---EDLIANEPMVVSMSYKGYVKRVDLKVYEKQNRGGKGKLS 537 Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDL 596 + E D ++ A+T D +L ++ G K Y +P + ++ G+A+ LI L Sbjct: 538 GSTY-EDDFIENFFVANTHDILLFITNKGQLYHLKVYKIPEASRIA---MGKAVVNLISL 593 Query: 597 NHNQDIVTAF 606 ++ I+ Sbjct: 594 APDEKIMATL 603 >gi|85716508|ref|ZP_01047479.1| DNA gyrase subunit A [Nitrobacter sp. Nb-311A] gi|85696697|gb|EAQ34584.1| DNA gyrase subunit A [Nitrobacter sp. Nb-311A] Length = 913 Score = 420 bits (1080), Expect = e-115, Method: Compositional matrix adjust. Identities = 244/631 (38%), Positives = 359/631 (56%), Gaps = 55/631 (8%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 ++ VS+ ++ YL YA+S I RA+PD RDG KPVHRRI++AM E G ++ ++KS Sbjct: 17 GIRPVSILDEMKRSYLDYAMSVIVARALPDARDGLKPVHRRILYAMHENGFEWNKPYRKS 76 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 AR VG+VIGK HPHGDQSVYD+LVR+AQ F R PLI GQGNFG++DGD AAA RYTE+R Sbjct: 77 ARTVGDVIGKYHPHGDQSVYDALVRMAQDFSMRVPLIDGQGNFGSVDGDMAAAMRYTESR 136 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 +T++A+ +L +D+D VDF+ Y+ + EP V P+KFPNLL NG GIAVGMAT+IP HN Sbjct: 137 LTKIAQSLLDDIDKDTVDFQPNYDNSEKEPSVLPAKFPNLLVNGAGGIAVGMATNIPPHN 196 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 + E+ +A +ALID+P +SI+ L+ I GPDFPTGGII+ R+ I +Y LGRG +R + Sbjct: 197 LGEVIDACVALIDDPALSIDDLINIIPGPDFPTGGIIL-GRQGIRSAYHLGRGSIVMRGK 255 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315 ++ + + IV++EIPYQV K+ ++E+IAEL+ K+I + D+RDES + V+ Sbjct: 256 VSIDTIRKDREAIVISEIPYQVNKASMVERIAELVREKKIEGISDLRDESDREGFRVVVE 315 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 R P++++ ++ + ++T F NM L GR PQ+M L +L ++A R +V+ RR Sbjct: 316 LKRDAVPEVVLNQLYRFTPLQTNFGANMVALDAGR-PQLMNLKDLLTLFIAFREQVVTRR 374 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR------------ 420 + F + R IL GL IA NIDEII +IR P + ++SR Sbjct: 375 TKFLLNKARDRAHILVGLAIAVANIDEIIRVIRESPDPNAARETLMSRDWPAKDVAAMIT 434 Query: 421 --------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466 L+ Q AIL+LRL+ L L +I ELD L E +L Sbjct: 435 LIDDPRHRVSPDGTARLSMEQAKAILDLRLQRLTALGREEISEELDKLAIEIADYLDILR 494 Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526 S + I E+ VK F+ RRT E + + +I++E + V +S+ Sbjct: 495 SRARVQAIIKTELDAVKSEFATP-----RRTVIVE---QEGEVEDEDLIQREDMVVTVSH 546 Query: 527 RGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---- 574 G++ R+ K S + ++ D + A T +L S+ G+ Y Sbjct: 547 AGYVKRVPLSAYRAQKRGGKGRSGMQTRDEDFVSRLFVASTHTPVLFFSSRGQVYKEKVW 606 Query: 575 -LPAGNLLSGRGHGEAIQLLIDLNHNQDIVT 604 LP + + G+A+ ++ L+ + I T Sbjct: 607 RLP---MAAPNARGKALINILPLDQGERITT 634 >gi|152993202|ref|YP_001358923.1| DNA gyrase subunit A [Sulfurovum sp. NBC37-1] gi|151425063|dbj|BAF72566.1| DNA gyrase subunit A [Sulfurovum sp. NBC37-1] Length = 840 Score = 420 bits (1080), Expect = e-115, Method: Compositional matrix adjust. Identities = 252/605 (41%), Positives = 380/605 (62%), Gaps = 32/605 (5%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 NV+ V + +++ YL Y++S I RA+PD RDG KPVHRRI++AM+++ L + +KKS Sbjct: 10 NVEEVLIEDSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMNDLSLSHRSPYKKS 69 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 ARIVG+VIGK HPHGD SVYD+LVR+AQ F + PL+ GQGNFG++DGD+AAA RYTEAR Sbjct: 70 ARIVGDVIGKYHPHGDNSVYDALVRMAQDFSMQAPLVDGQGNFGSVDGDNAAAMRYTEAR 129 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 MT++AE +L +++D VDF Y++ SEP V PS+ PNLL NG+SGIAVGMAT+IP H Sbjct: 130 MTKIAEELLSDLEKDTVDFVPNYDDSMSEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHR 189 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 + E+ +A + IDNPE SIE +++ + GPDFPTGGII R+ I ++Y GRG +VRA+ Sbjct: 190 LNELIDALVVRIDNPEASIEDMMKIVQGPDFPTGGIIF-GRKGITDAYTTGRGRIKVRAK 248 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLF 314 +E+ G I++ E+P+QV KSRLIE IA+L+ K I + +IRDES E +R+V+ Sbjct: 249 THIEQKG-NKEIIIIDELPFQVNKSRLIENIAQLVRDKHIEGISEIRDESDREGIRVVME 307 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K ++ ++++ ++F + M+ F + M + + P+V L + +L HR+ V+ R Sbjct: 308 LKRDAM-SEIVLNNLFKSTQMQVTFGIIMLAIH-NKEPKVFNLMELFDLFLNHRKTVIIR 365 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAI 431 R+ F ++ R IL+GL IA NIDE+I IIR ++ + + ++SRFSL+E Q AI Sbjct: 366 RTIFDLEKARARAHILEGLKIAVDNIDEVIKIIRASSDDVEARENLMSRFSLSEIQAKAI 425 Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491 L +RLR L LE +I++EL LL ++ +L S +++ NQI E E+ EI K Sbjct: 426 LEMRLRRLTGLEIEKIENELAELLKTIAYLEGILKS-EEKINQIIRE--ELIEIGEKYR- 481 Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL------KSH--SVDLSAL 543 RRT E+ + +I EP+ V I++RG+I+ + K H +A+ Sbjct: 482 -TPRRT---EIVDDYDDIDIEDLIPNEPMVVTITHRGYIKRVPVKLYEKQHRGGKGKTAV 537 Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDLNH 598 + D ++ ++T D ++ ++ G K Y +P G S G+A+ LI+L Sbjct: 538 TTYDDDFIESFFTSNTHDTLMFVTDRGQLYWLKVYRIPEG---SRTAKGKAVVNLINLQP 594 Query: 599 NQDIV 603 ++ I+ Sbjct: 595 DEKIM 599 >gi|226309598|ref|YP_002769492.1| DNA gyrase subunit A [Brevibacillus brevis NBRC 100599] gi|226092546|dbj|BAH40988.1| DNA gyrase subunit A [Brevibacillus brevis NBRC 100599] Length = 844 Score = 420 bits (1079), Expect = e-115, Method: Compositional matrix adjust. Identities = 246/640 (38%), Positives = 384/640 (60%), Gaps = 37/640 (5%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 V + + E +++YA+S I RA+PD+RDG KPVHRRI++AM +MGL F+KSA +V Sbjct: 11 VDISHEMRESFISYAMSVIVSRALPDVRDGLKPVHRRILYAMHDMGLTPDKPFRKSANVV 70 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 GEV+ HPHGD S+Y+++VR+AQ F RY L+ GQGNFG++DGD AAA RYTE+R +++ Sbjct: 71 GEVMANYHPHGDSSIYEAMVRMAQDFNMRYMLVEGQGNFGSVDGDPAAAMRYTESRFSKL 130 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A +L+ +D++ VDF Y+ EPVV PS+FPNLL NG SGIAVGMAT+IP HN+ E+ Sbjct: 131 ALELLRDIDKETVDFIPNYDGRKEEPVVLPSRFPNLLLNGASGIAVGMATNIPPHNLTEV 190 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 + +A+IDNP+I+I+ L++ I GPDFPT G I+ I +Y GRG +RA+ +E Sbjct: 191 VDGVIAMIDNPDITIQDLMKIIKGPDFPTAGEIL-GYSGIRRAYETGRGSIIMRAKTQIE 249 Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319 E G+G I+VTEIPYQV K+RL+EKIAEL+ K+I + D+RDES ++ R Sbjct: 250 EDGKGKPRIIVTEIPYQVNKARLVEKIAELVREKKIEGITDLRDESDRKGMRIVMELRRD 309 Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379 + P +++ ++F + M++ F +NM L R P+V+ L +L +L H+R ++ RR+ + Sbjct: 310 VIPKVVLNNLFKHTQMQSTFGVNMLALVDSR-PRVLNLRDMLYYYLEHQRVIIRRRTEYD 368 Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAILNLRL 436 ++ + R IL+GL IA +IDEII++IR+ ++ + ++ +SL+ Q AIL++RL Sbjct: 369 LKQAEARAHILEGLRIALDHIDEIISLIRSSQTTEEARTGLMENYSLSYEQAQAILDMRL 428 Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496 + L LE +I++E L+ + ++ ++L + + I E+ E+KE F D R Sbjct: 429 QRLTGLEREKIENEYQELMVKIAELRAILADEAKIYAIIRDELGEIKEKFG---DERRTE 485 Query: 497 TTFCE--VSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFK 546 TF E + AD +I +E + + +++ G+I RS K + L K Sbjct: 486 ITFDENHIEDAD-------LIPEEDVVITLTHDGYIKRLPVSTYRSQKRGGRGVQGLGTK 538 Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVT 604 + D ++ ++ D I+ ++ GK Y L + LS G I LI + + V+ Sbjct: 539 DDDFVEHLYITNSHDYIMFFTSKGKVYRLKGFEIPDLSRTAKGTPIINLIQIEKGER-VS 597 Query: 605 AFV----YDSTCKLLVVSSKGNAFIVEES--EIIANTRKG 638 A + +D L + KG I++++ E N RKG Sbjct: 598 AVIPVKEFDQEHYLFFATKKG---IIKKTTLESYENIRKG 634 >gi|75675993|ref|YP_318414.1| DNA gyrase subunit A [Nitrobacter winogradskyi Nb-255] gi|74420863|gb|ABA05062.1| DNA gyrase subunit A [Nitrobacter winogradskyi Nb-255] Length = 913 Score = 420 bits (1079), Expect = e-115, Method: Compositional matrix adjust. Identities = 245/631 (38%), Positives = 359/631 (56%), Gaps = 55/631 (8%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 ++ VS+ ++ YL YA+S I RA+PD RDG KPVHRRI++AM E G ++ ++KS Sbjct: 17 GIRPVSILEEMKRSYLDYAMSVIVARALPDARDGLKPVHRRILYAMYENGFEWNKPYRKS 76 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 AR VG+VIGK HPHGDQSVYD+LVR+AQ F R PLI GQGNFG++DGD AAA RYTE+R Sbjct: 77 ARTVGDVIGKYHPHGDQSVYDALVRMAQDFSMRVPLIDGQGNFGSVDGDMAAAMRYTESR 136 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 +T++A+ +L +D+D VDF+ Y+ + EP V P+KFPNLL NG GIAVGMAT+IP HN Sbjct: 137 LTKIAQSLLDDIDKDTVDFQPNYDNSEREPSVLPAKFPNLLVNGAGGIAVGMATNIPPHN 196 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 + E+ +A +ALID+P + I+ L++ I GPDFPTGGII+ R+ I +Y LGRG +R + Sbjct: 197 LGEVIDACVALIDDPALGIDDLIKIIPGPDFPTGGIIL-GRQGIRSAYHLGRGSIVMRGK 255 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315 ++ + + IVV+EIPYQV K+ ++E+IAEL+ K+I + D+RDES + V+ Sbjct: 256 VSIDTIRKDREAIVVSEIPYQVNKASMVERIAELVREKKIDGISDLRDESDREGFRVVVE 315 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 R P++++ ++ + ++T F NM L GR PQVM L +L ++A R +V+ RR Sbjct: 316 LKRDAVPEIVLNQLYKYTPLQTNFGANMVALDAGR-PQVMNLKDLLTLFIAFREQVVTRR 374 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR------------ 420 + F + R IL GL IA NIDEII +IR P + ++SR Sbjct: 375 TKFLLNKARDRAHILVGLAIAVANIDEIIRVIRESPDPNAARETLMSRDWPAKDVAAMIT 434 Query: 421 --------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466 L+ Q AIL+LRL+ L L +I ELD L E +L Sbjct: 435 LIDDPRHRVSPDGTARLSMEQAKAILDLRLQRLTALGREEISEELDKLAIEIADYLDILR 494 Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526 S + I E+ VK F+ RRT E + + +I++E + V +S+ Sbjct: 495 SRARVQAIIKTELGAVKSEFATP-----RRTVIVE---QEGEVEDEDLIQREDMVVTVSH 546 Query: 527 RGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---- 574 G++ R+ K S + ++ D + A T +L S+ G+ Y Sbjct: 547 AGYVKRVPLSTYRAQKRGGKGRSGMQTRDEDFVSRLFVASTHTPVLFFSSRGQVYKEKVW 606 Query: 575 -LPAGNLLSGRGHGEAIQLLIDLNHNQDIVT 604 LP + + G+A+ ++ L+ + I T Sbjct: 607 RLP---MAAPNARGKALINILPLDQGERITT 634 >gi|254520690|ref|ZP_05132746.1| subunit A [Clostridium sp. 7_2_43FAA] gi|226914439|gb|EEH99640.1| subunit A [Clostridium sp. 7_2_43FAA] Length = 848 Score = 420 bits (1079), Expect = e-115, Method: Compositional matrix adjust. Identities = 276/779 (35%), Positives = 429/779 (55%), Gaps = 66/779 (8%) Query: 11 TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70 +L E V ++ + ++ Y+ YA+S I RA+PD+RDG KPVHRRI+ +MSE+GL Sbjct: 2 SLNEGKVISIDINKEMKRCYIDYAMSVIVGRALPDVRDGLKPVHRRILFSMSELGLAPEK 61 Query: 71 AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130 ++K ARIVGEV+GK HPHGD SVYD+LVR+AQ F RY L+ G GNFG++DGDSAAA R Sbjct: 62 GYRKCARIVGEVLGKYHPHGDSSVYDALVRMAQDFSMRYMLVDGHGNFGSVDGDSAAAMR 121 Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190 YTEA+M ++A +L+ + ++ VDF ++ E+ EPVV PS++PNLL NG+SGIAVGMAT+ Sbjct: 122 YTEAKMNKIAAEMLRDISKNTVDFIPNFDGEEKEPVVLPSRYPNLLVNGSSGIAVGMATN 181 Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250 IP HN+ E+ + + LIDNPE ++ +L+ I GPDFPTG I+ + I +Y G+G Sbjct: 182 IPPHNLGEVIDGTIMLIDNPETTVLELMTAIKGPDFPTGATIM-GKSGIRAAYETGKGRI 240 Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-V 309 VRA+ +EE I+VTEIPYQV K++LIE IA+L+ K+I + D+RDES D + Sbjct: 241 IVRAKAEIEE-ENNRHKIIVTEIPYQVNKAKLIENIADLVKDKKIVGISDLRDESDRDGM 299 Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369 RIV+ K + +P++++ ++ + M+ F + M L + PQV+ L +L ++ ++ Sbjct: 300 RIVIELK-KDANPNVILNLLYKHTKMQDTFGVIMLAL-VNNEPQVLNLKQVLANYIEFQK 357 Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTEN 426 EV+ RR+ F + + R IL+GL IA NIDE+I IIR+ K ++ RF L+E Sbjct: 358 EVVTRRTVFELNKAEARAHILEGLRIALDNIDEVINIIRSSKTTEIAKNTLIERFQLSEK 417 Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486 Q AIL +RLR L LE +I+ E L+ + ++S+L S ++ + I E+ E+K + Sbjct: 418 QAQAILEMRLRRLTGLERDKIEEEFAELMKLIDYLNSILASEEKLLSVIKDELIEIKNRY 477 Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD------- 539 + RRT+ +V + ++ +I++E + + +++ G+I+ + + + Sbjct: 478 NDE-----RRTSIEKV--VNDIDIED-LIQEEEVVITLTHSGYIKRISADTYSSQRRGGR 529 Query: 540 -LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEAIQLLIDL 596 + A+ KE D ++ T +L + G+ Y L A + +GR G I LI + Sbjct: 530 GIQAMSTKEDDFVEHVNVVSTHSDVLFFTNRGRVYKLRAYEIPDAGRTAKGTNIINLIAI 589 Query: 597 NHNQDIVT----------AFVYDSTCKLLVVSSKGNAF--IVEESEIIANTRKGKTFLKV 644 ++ I T F++ T + LV + + F + + I N R G LKV Sbjct: 590 EQDEKIETVLSVKDDVNEGFLFMGTKQGLVKKTPLSEFKNLRKNGLIAINLRDGDELLKV 649 Query: 645 SSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFK 704 + + D V V + + D P GVR + + I+ +C Sbjct: 650 K-------ITRGDADIVIVTQDGNAIRFNETDVRPMGRTASGVRSINLRKDDIA--VCMD 700 Query: 705 IC---EGLTWIDSAG-------RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753 I E L I G Y R KRGG G + K ++GK + + Sbjct: 701 IAVEGEDLLVISENGFGKRTPITEYKRQ---------KRGGTGLITYKLSEKTGKVIGA 750 >gi|210134904|ref|YP_002301343.1| DNA gyrase subunit A [Helicobacter pylori P12] gi|210132872|gb|ACJ07863.1| DNA gyrase subunit A [Helicobacter pylori P12] Length = 826 Score = 420 bits (1079), Expect = e-115, Method: Compositional matrix adjust. Identities = 245/610 (40%), Positives = 379/610 (62%), Gaps = 34/610 (5%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 +N+ V + ++EE YLAY++S I RA+PD RDG KPVHRRI++AM E+GL A+KK Sbjct: 10 KNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHELGLTSKVAYKK 69 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 SARIVG+VIGK HPHGD +VYD+LVR+AQ F R L+ GQGNFG+IDGD+AAA RYTEA Sbjct: 70 SARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDNAAAMRYTEA 129 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 RMT+ +E IL+ +D+D +DF Y++ EP + PS+ PNLL NG +GIAVGMATSIP H Sbjct: 130 RMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGIAVGMATSIPPH 189 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 + EI +A + +++NP +++++LE++ GPDFPTGGII + I+E+Y+ GRG +VRA Sbjct: 190 RMDEIIDALVHVLENPNAALDEILEFVKGPDFPTGGIIY-GKAGIIEAYKTGRGRVKVRA 248 Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVL 313 + VE+ + IV+ E+P+Q K++L+E+I++L K+I + ++RDES E +R+V+ Sbjct: 249 KVHVEKT-KNKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRDESDREGIRVVI 307 Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373 K ++ ++++ ++ L+ MET F + + + + P++ L +L+ +L HR+ ++ Sbjct: 308 ELKRDAM-SEIVLNHLYKLTTMETTFSIILLAI-YNKEPKIFTLLELLRLFLNHRKTIII 365 Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVDA 430 RR+ F ++ R IL+G LIA NIDEI+ +I+ P K ++ RF L+E Q A Sbjct: 366 RRTIFELEKAKARAHILEGYLIALDNIDEIVQLIKTSQSPEAAKNALMERFILSEIQSKA 425 Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490 IL +RL+ L LE +IK E NLL ++ +L S + + E+ EVKE FS Sbjct: 426 ILEMRLQRLTGLERDKIKEEYQNLLELIADLNGILKSEDRLNGVVKTELLEVKEQFSSP- 484 Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSVD-------LS 541 RRT E+ + + + +I EP+ V +S +G+++ LK + LS Sbjct: 485 ----RRT---EIQESYENIDIEDLIANEPMVVSMSYKGYVKRVDLKVYEKQNRGGKGKLS 537 Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDL 596 + E D ++ A+T D +L ++ G K Y +P + ++ G+AI LI L Sbjct: 538 GSTY-EDDFIENFFVANTHDILLFITNKGQLYHLKVYKIPEASRIA---MGKAIVNLISL 593 Query: 597 NHNQDIVTAF 606 ++ I+ Sbjct: 594 APDEKIMATL 603 >gi|94323533|gb|ABF17878.1| DNA gyrase subunit A [Staphylococcus xylosus] Length = 903 Score = 420 bits (1079), Expect = e-115, Method: Compositional matrix adjust. Identities = 235/608 (38%), Positives = 373/608 (61%), Gaps = 25/608 (4%) Query: 12 LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71 L E + ++ + E +L YA+S I RA+PD+RDG KPVHRRI++ + E G+ + Sbjct: 4 LPESRINERNITSEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLHEQGMTPDKS 63 Query: 72 FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131 +KKSARIVG+V+GK HPHGD S+Y+++VR+AQ F RYPLI GQGNFG++DGD AAA RY Sbjct: 64 YKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLIDGQGNFGSMDGDGAAAMRY 123 Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191 TEARM+++ +L+ +++D +DF D Y+ + EP V PS+FPNLL NG SGIAVGMAT+I Sbjct: 124 TEARMSKITLEMLRDINKDTIDFIDNYDGNEREPAVLPSRFPNLLVNGASGIAVGMATNI 183 Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251 P HN+ E+ L+L NP+I++ +L+E + GPDFPT GII+ + I ++ GRG + Sbjct: 184 PPHNLTEVINGVLSLSYNPDITVAELMEDVQGPDFPTAGIIL-GKSGIRRAFETGRGSIQ 242 Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA--EDV 309 +R+R +EE G G IVVTE+PYQV K+R+IEKIAEL K+I + D+RDE++ V Sbjct: 243 MRSRAEIEERGGGRQRIVVTEVPYQVNKARMIEKIAELARDKKIEGITDLRDETSLRTGV 302 Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369 R+V+ + + + +++ +++ + ++T F +NM L GR P+++ L L+E+L H++ Sbjct: 303 RVVIDIR-KDANASVVLNNLYKQTPLQTSFGVNMIALVNGR-PKLISLKEALEEYLEHQK 360 Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTEN 426 V+ RR+ + ++ R IL+GL IA +IDEII +IR + K M S +F L+E Sbjct: 361 VVVRRRTEYNLKKALDRAHILEGLRIALDHIDEIIRVIRESETDKVAMASLQEQFKLSER 420 Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486 Q AIL++RLR L LE +I+SE L+A E++ +L ++ + E+ +++E + Sbjct: 421 QAQAILDMRLRRLTGLERDKIESEYIELIAYIEELKEILADEEKLLQIVRNELIDIRERY 480 Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV-------- 538 G R + ++ D + +I +E I + +S+ +I+ L + Sbjct: 481 ------GDERRSEIQLGGLDDIE-DEDLIPEEQIVITLSHNNYIKRLPVSTYRAQHRGGR 533 Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDL 596 + ++ E D + + T D +L + G+ Y L + LS + G + I+L Sbjct: 534 GVQGMNTLEEDFVSQLVTLSTHDNVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIEL 593 Query: 597 NHNQDIVT 604 ++++ I T Sbjct: 594 DNDESIST 601 >gi|121602587|ref|YP_989035.1| DNA gyrase subunit A [Bartonella bacilliformis KC583] gi|18920720|gb|AAL82403.1|AF469609_2 gyrase A subunit [Bartonella bacilliformis] gi|120614764|gb|ABM45365.1| DNA gyrase, A subunit [Bartonella bacilliformis KC583] Length = 928 Score = 420 bits (1079), Expect = e-115, Method: Compositional matrix adjust. Identities = 255/716 (35%), Positives = 390/716 (54%), Gaps = 63/716 (8%) Query: 13 VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72 V ++ VS+ ++ YL YA+S I RA+PD+RDG KPVHRRI+HAM+EMGL F + Sbjct: 12 VSTGIEPVSIIEEMQCSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAMNEMGLLFNKPY 71 Query: 73 KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132 +KSA +VGEV+GK HPHGD S+YD+LVR+AQ F R PLI GQGNFG++DGD AA RYT Sbjct: 72 RKSAGVVGEVMGKFHPHGDASIYDALVRMAQDFSLRNPLIDGQGNFGSVDGDPPAAMRYT 131 Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192 E R+ +VAE +L +D+D VDF+D Y+ + EP+V P++FPNLL NG+ GIAVGMAT+IP Sbjct: 132 ECRLEKVAEELLADIDKDTVDFQDNYDGREHEPIVLPARFPNLLVNGSGGIAVGMATNIP 191 Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252 HN+ E+ + +ALIDNP I+I+++L I GPDFPTGGII+ + +Y GRG + Sbjct: 192 PHNLGEVIDGCVALIDNPNITIDEMLAIIPGPDFPTGGIIL-GHSGVRSAYETGRGSIIM 250 Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312 RA+ +EE+ I+V+EIPYQV K+ ++EK+AEL+ KRI + D+RDES D V Sbjct: 251 RAKVEIEEIRNQRQAIIVSEIPYQVNKATMVEKMAELVRDKRIEGISDLRDESDRDGYRV 310 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 + R D+++ ++ + ++ F NM L+ G+ P+ M L +L+ +++ R EV+ Sbjct: 311 VIELKREAVADVVLNQLYRYTPLQASFGCNMVALNGGK-PEQMTLLDMLRAFVSFREEVV 369 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV-------------- 418 RR+ + ++ R +L GL IA NIDEII +IR P+ Sbjct: 370 SRRTKYLLRKARERAHVLVGLAIAVANIDEIIELIRKAHDPQTARTQLMERRWPASEVAA 429 Query: 419 ---------------SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDS 463 + ++L+E Q AIL LRL+ L L +I EL+ + + Sbjct: 430 LIKLIDDPRHIIHEDNTYNLSEEQARAILELRLQRLTALGRNEIADELNAIGEDIADYLG 489 Query: 464 LLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVV 523 +L S + + + E+ ++E F+ RRT F S + +I E + V Sbjct: 490 ILASRSRIMDIVKSELSALRETFATP-----RRTVFGFGSAEMDC---EDLIVPEDMVVT 541 Query: 524 ISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG----- 570 +S+ G+I R+ + S + K+ D + A+T +L S+ G Sbjct: 542 VSHSGYIKRVPLNTYRAQRRGGKGRSGMATKDQDFVTRLFVANTHTPVLFFSSRGIVYKE 601 Query: 571 KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD------STCKLLVVSSKGNAF 624 K + LP G + + G A+ ++ L + I T ++ +++G Sbjct: 602 KVWRLPVG---TPQSRGRALINMLPLQQGERITTIMPLPEDEASWGKLDIMFATTRGTVR 658 Query: 625 IVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH--VAVVGENRKLLIFSIDQI 678 + S+ I R GK +K+ E L V+ +H V ++ N + + F + I Sbjct: 659 RNKLSDFIQVNRNGKIAMKLDEEGDEILSVETCTEHDDVVLITANGQCIRFPVTDI 714 >gi|295134436|ref|YP_003585112.1| DNA gyrase subunit A [Zunongwangia profunda SM-A87] gi|294982451|gb|ADF52916.1| DNA gyrase subunit A [Zunongwangia profunda SM-A87] Length = 846 Score = 420 bits (1079), Expect = e-115, Method: Compositional matrix adjust. Identities = 236/609 (38%), Positives = 375/609 (61%), Gaps = 31/609 (5%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 E + +++ ++ Y+ Y++S I RA+PD+RDG KPVHRR+++ M E+G+ ++KK Sbjct: 5 EKLIPINIEEEMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMYELGVLSNRSYKK 64 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 SARIVGEV+GK HPHGD SVYD++VR+AQ + RY L+ GQGNFG++DGDS AA RYTEA Sbjct: 65 SARIVGEVLGKYHPHGDSSVYDTMVRMAQEWSMRYMLVDGQGNFGSVDGDSPAAMRYTEA 124 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 RM +++E +L +D++ VD + +++ +EPVV P++ PNLL NG SGIAVGMAT++ H Sbjct: 125 RMRKISEDMLADIDKETVDTQLNFDDSLNEPVVMPTRIPNLLVNGASGIAVGMATNMAPH 184 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 N+ E+ + +A ID+ +I I++L+++I PDFPTGGII + + E+++ GRG +RA Sbjct: 185 NLSEVIDGTVAYIDDHDIEIDELMQHIKAPDFPTGGIIY-GYDGVREAFKTGRGRVVMRA 243 Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314 + +EEV G CI+VTEIPYQV K+ +I+K A+LI K+I + IRDES +++ Sbjct: 244 KSSLEEVN-GKECIIVTEIPYQVNKADMIKKTADLINDKKIEGISLIRDESDRHGMRIVY 302 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 R P++++ ++F + +++ F +N L GR P+++ L I+ ++ HR EV+ R Sbjct: 303 QLKRDAIPNIVLNTLFKHTALQSSFSVNNIALVKGR-PEMLNLKDIIYHFVEHRHEVVVR 361 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAI 431 R+ F ++ + R IL+GL+IA NIDE+IA+IR N ++ + ++ RF L+E Q AI Sbjct: 362 RTEFELKKAEDRAHILEGLIIASDNIDEVIALIRSSNNAEEARQKLIDRFELSELQARAI 421 Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491 + +RLR L LE+ ++++E D ++ + + +L +++ I E+ EVKE + Sbjct: 422 VEMRLRQLTGLEQDKLRAEYDEIIETIKDLKDILARKERRMQVIKDELLEVKEKYGD--- 478 Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSH------SVDLSAL 543 GRR T E + D + + MI E + + IS+ G+I+ SL + V Sbjct: 479 -GRRST--IEYAGGDLSI--EDMIPDERVIITISHAGYIKRTSLNEYKRQNRGGVGQKGS 533 Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKA-----YTLPAGNLLSGRGHGEAIQLLIDLNH 598 + + D L+ +L + GK Y +P G S G AIQ LI++ Sbjct: 534 NTRNEDFLEYLFSGTNHQYMLFFTQKGKCFWMRVYEIPEG---SKSSKGRAIQNLINIEQ 590 Query: 599 NQDIVTAFV 607 + D V AF+ Sbjct: 591 D-DRVKAFI 598 >gi|46202307|ref|ZP_00208476.1| COG0188: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit [Magnetospirillum magnetotacticum MS-1] Length = 898 Score = 420 bits (1079), Expect = e-115, Method: Compositional matrix adjust. Identities = 266/741 (35%), Positives = 408/741 (55%), Gaps = 66/741 (8%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 ++ V++ ++ YL YA+S I RA+PD+RDG KPVHRRI+ AM+E G F F+KS Sbjct: 11 DITPVTIEDEMKRSYLDYAMSVIVSRALPDVRDGLKPVHRRILFAMNEAGYHFNKPFRKS 70 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 ARIVG+V+GK HPHGD ++YD++VR+AQ F R PL+ GQGNFG++DGD AA RYTEAR Sbjct: 71 ARIVGDVMGKYHPHGDSAIYDAMVRMAQNFSMRLPLVDGQGNFGSMDGDPPAAMRYTEAR 130 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 + + A +L+ +D++ VDF+ Y+E EP+V P+++PNLL NG GIAVGMAT+IP HN Sbjct: 131 LAKSAHSLLEDIDKETVDFQANYDESTHEPMVLPARYPNLLVNGAGGIAVGMATNIPPHN 190 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 + E+ +A A ID+PE+++E+L+E + GPDFPTGG I+ R I + GRG +R R Sbjct: 191 LGEVIDACCAYIDDPEVTVERLMELVPGPDFPTGGTIL-GRAGIRAAQLTGRGSVVMRGR 249 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314 +EEV + I+VTEIPYQV K+R++E+IAEL+ K+I + D+RDES D VR+V+ Sbjct: 250 VHIEEVRKDREAIIVTEIPYQVNKARMLEQIAELVRDKKIEGISDLRDESDRDGVRVVIE 309 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K ++ ++++ ++ + ++T F +N L+ GR P++M L I+ ++A R EV+ R Sbjct: 310 IKRDAI-AEVVLAQLYRFTPLQTSFGVNSLALNGGR-PEMMTLRDIIVAFIAFREEVITR 367 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----------- 420 R+ F + R +L GL IA NIDE+I +IR P + +++R Sbjct: 368 RTIFELGKARDRAHVLAGLAIAVANIDEVIRLIRAAPDPGEARERLMTRAWPVGDVEPLI 427 Query: 421 --------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466 + L+E Q AIL+LRL L LE +I EL + + E +L+ Sbjct: 428 QLIDEPGRAIEDGCYRLSEIQAKAILDLRLHRLTGLERDKIGDELREIGHQIEAYLLILS 487 Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVS-RADKATLQQAMIEKEPITVVIS 525 S + + + E+ E++E F+ RRTT E AD + +I +E + V ++ Sbjct: 488 SRPRLFEVMRGELMEIREQFATP-----RRTTIEENEFEADI----EDLIAREDMVVTVT 538 Query: 526 NRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KA 572 N G+I R+ K S ++ K+ D L +T +L S+ G K Sbjct: 539 NTGYIKRVPLSAYRAQKRGGKGRSGMNIKDEDFLSQVFVVNTHTPVLFFSSTGIAYKLKV 598 Query: 573 YTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVT--AFVYDSTC----KLLVVSSKGNAFIV 626 Y LP GN + G+A+ L+ L+ + I T D T ++ V+SKG+ Sbjct: 599 YRLPLGN---PQARGKAMVNLLPLDEGETISTIMPLPEDETSWGDLHVMFVTSKGDVRRN 655 Query: 627 EESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--DHVAVVGENRKLLIFSIDQIPEMSRG 684 S+ GK +K+ E++ V D V + K + F + + E Sbjct: 656 PLSDFTEVRANGKIAMKLGEGERLISVQTCAAETDDVLLATHLGKAIRFPVHDVREFKSR 715 Query: 685 KGVRLQSYKDGGISDVICFKI 705 ++ + G +VI I Sbjct: 716 DSTGVRGIRLDGEDEVISMSI 736 >gi|330751978|emb|CBL80491.1| DNA gyrase subunit A [uncultured Polaribacter sp.] Length = 848 Score = 420 bits (1079), Expect = e-115, Method: Compositional matrix adjust. Identities = 233/615 (37%), Positives = 368/615 (59%), Gaps = 31/615 (5%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 E V +++ ++ Y+ Y++S I RA+PD+RDG KPVHRR++ M E+G+ ++KK Sbjct: 5 EKVIPINIEEQMKAAYIDYSMSVIVSRALPDVRDGLKPVHRRVLFGMHELGIKATGSYKK 64 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 SARIVGEV+GK HPHGD SVYDS+VR+AQ + RY ++ GQGNFG++DGDS AA RYTE Sbjct: 65 SARIVGEVLGKFHPHGDTSVYDSMVRMAQNWSVRYMMVDGQGNFGSVDGDSPAAMRYTEV 124 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 RM +++E +L +++D VD R +++ EP V P++ PNLL NG SGIAVGMAT++ H Sbjct: 125 RMQKISEDMLADIEKDTVDHRLNFDDTLQEPTVLPTRIPNLLVNGASGIAVGMATNMAPH 184 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 N+ E+ LA I+N EI I++L+++I PDFPTGGII + + +++ GRG +RA Sbjct: 185 NLTEVINGTLAYIENSEIEIDELMQHITAPDFPTGGIIY-GYDGVRDAFHTGRGRIVMRA 243 Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314 + VEEV +G CI+VTEIPYQV K+ +I+K AEL+ K+I + +IRDES + +++ Sbjct: 244 KAIVEEV-KGRECIIVTEIPYQVNKAEMIKKTAELVNDKKIEGISNIRDESDRNGMRIVY 302 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 R P++++ +F + ++T F +N L GR P+ + L ++ ++ HR EV+ R Sbjct: 303 ILKRDAIPNIVLNKLFKYTQLQTSFSVNNIALVKGR-PEQLNLKQLIHYFVEHRHEVVVR 361 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAI 431 R+ F ++ + R IL+GL+IA NIDE+IA IR N D+ + ++ RF LTE Q AI Sbjct: 362 RTEFDLKKAEARAHILEGLIIASDNIDEVIATIRASKNADEAREKLIVRFELTEIQAKAI 421 Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491 + +RLR L LE+ ++++E D ++ + +L + ++++ I E+ +K+ + Sbjct: 422 VEMRLRQLTGLEQDKLRAEFDAIMLTITDLKDILANEPRRYDIIKEELAHIKDKY----- 476 Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSVDLSALHFKEG- 548 G R + E + D + MI + V ISN G+++ +L+ + V ++G Sbjct: 477 -GDERRSIIEYAGGDMRI--EDMIPDTKVVVTISNAGYLKRTNLEEYKVQNRGGRGQKGA 533 Query: 549 -----DSLKIALHAHTTDRILLLSTDGK-----AYTLPAGNLLSGRGHGEAIQLLIDLNH 598 D L+ ++ + GK Y +P G G A+Q LI++ Sbjct: 534 TTRNEDFLEHLFVGTNHQYMMFFTQKGKVFWMRVYEIPEG---GKNTKGRAMQNLINIEP 590 Query: 599 NQDIVTAFVYDSTCK 613 + D V AF+ K Sbjct: 591 D-DKVKAFLVTQDLK 604 >gi|254779317|ref|YP_003057422.1| DNA gyrase subunit A [Helicobacter pylori B38] gi|254001228|emb|CAX29200.1| DNA gyrase subunit A [Helicobacter pylori B38] Length = 827 Score = 420 bits (1079), Expect = e-115, Method: Compositional matrix adjust. Identities = 244/614 (39%), Positives = 376/614 (61%), Gaps = 42/614 (6%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 +N+ V + ++EE YLAY++S I RA+PD RDG KPVHRRI++AM E+GL A+KK Sbjct: 10 KNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHELGLTSKVAYKK 69 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 SARIVG+VIGK HPHGD +VYD+LVR+AQ F R L+ GQGNFG+IDGD+AAA RYTEA Sbjct: 70 SARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDNAAAMRYTEA 129 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 RMT+ +E IL+ +D+D +DF Y++ EP + PS+ PNLL NG +GIAVGMATSIP H Sbjct: 130 RMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGIAVGMATSIPPH 189 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 + EI +A +++NP ++++LE++ GPDFPTGGII + IVE+Y+ GRG +VRA Sbjct: 190 RIDEIIDALAHVLENPNAELDEILEFVKGPDFPTGGIIY-GKAGIVEAYKTGRGRVKVRA 248 Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVL 313 + VE+ + IV+ E+P+Q K++L+E+I++L K+I + ++RDES E +R+V+ Sbjct: 249 KVHVEKT-KNKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRDESDREGIRVVI 307 Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373 K ++ ++++ ++ L+ MET F + + + + P++ L +L +L HR+ ++ Sbjct: 308 ELKRDAM-SEIVLNHLYKLTTMETTFSIILLAI-YNKEPKIFTLLELLCLFLNHRKTIII 365 Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVDA 430 RR+ F ++ R IL+G LIA NIDEI+ +I+ P K ++ RF+L+E Q A Sbjct: 366 RRTIFELEKAKARAHILEGYLIALDNIDEIVQLIKTSPSPEAAKNALMERFTLSEIQSKA 425 Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490 IL +RL+ L LE +IK E NLL ++ +L S + + E+ E+KE FS Sbjct: 426 ILEMRLQRLTCLERDKIKEEYQNLLELIADLNGILKSEDRLNEVVKIELLEIKEQFSSP- 484 Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK---- 546 RRT E+ + + + +I EP+ V +S +G+++ VDL A + Sbjct: 485 ----RRT---EIQESYENIDIEDLIANEPMVVSMSYKGYVK-----RVDLKAYEKQNRGG 532 Query: 547 ---------EGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQL 592 E D ++ A+T D +L ++ G K Y +P + ++ G+A+ Sbjct: 533 KGKLSGSTYEDDFIENFFVANTHDILLFITNKGQLYHLKVYKIPEASRIA---MGKAVVN 589 Query: 593 LIDLNHNQDIVTAF 606 LI L ++ I+ Sbjct: 590 LISLAPDEKIMATL 603 >gi|83311480|ref|YP_421744.1| Type IIA topoisomerase, A subunit [Magnetospirillum magneticum AMB-1] gi|82946321|dbj|BAE51185.1| Type IIA topoisomerase , A subunit [Magnetospirillum magneticum AMB-1] Length = 895 Score = 420 bits (1079), Expect = e-115, Method: Compositional matrix adjust. Identities = 267/741 (36%), Positives = 408/741 (55%), Gaps = 66/741 (8%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 ++ V++ ++ YL YA+S I RA+PD+RDG KPVHRRI+ AM+E G F F+KS Sbjct: 11 DITPVTIEDEMKRSYLDYAMSVIVSRALPDVRDGLKPVHRRILFAMNEAGYHFNKPFRKS 70 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 ARIVG+V+GK HPHGD ++YD++VR+AQ F R PL+ GQGNFG++DGD AA RYTEAR Sbjct: 71 ARIVGDVMGKYHPHGDSAIYDAMVRMAQNFSMRLPLVDGQGNFGSMDGDPPAAMRYTEAR 130 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 + + A +L+ +D++ VDF+ Y+E EP+V P+++PNLL NG GIAVGMAT+IP HN Sbjct: 131 LARSAHSLLEDIDKETVDFQANYDESTHEPMVLPARYPNLLVNGAGGIAVGMATNIPPHN 190 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 + E+ +A A ID+PE+++E+L+E + GPDFPTGG I+ R I + GRG +R R Sbjct: 191 LGEVIDACCAYIDDPEVTVERLMELVPGPDFPTGGTIL-GRAGIRAAQLTGRGSVVMRGR 249 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314 +EEV + IVVTEIPYQV K+R++E+IAEL+ K+I + D+RDES D VR+V+ Sbjct: 250 VHIEEVRKDREAIVVTEIPYQVNKARMLEQIAELVRDKKIEGISDLRDESDRDGVRMVVE 309 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K ++ ++++ ++ + ++T F +N L+ GR P++M L I+ ++A R EV+ R Sbjct: 310 IKRDAI-AEVVLAQLYRFTPLQTSFGVNSLALNGGR-PEMMTLRDIIVAFIAFREEVITR 367 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----------- 420 R+ F + R +L GL IA NIDE+I +IR P + +++R Sbjct: 368 RTIFELGKARDRAHVLAGLAIAVANIDEVIRLIRAAPDPGEAREKLMTRAWPVGDVEPLI 427 Query: 421 --------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466 + L+E Q AIL+LRL L LE +I EL + + E +L+ Sbjct: 428 RLIDEPGRAIEDGCYRLSEVQAKAILDLRLHRLTGLERDKIGDELREIGHQIEAYLLILS 487 Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVS-RADKATLQQAMIEKEPITVVIS 525 S + + E+ E++E F+ RRTT E AD + +I +E + V ++ Sbjct: 488 SRPRLMEVMRGELMEIREQFATP-----RRTTIEENEFEADI----EDLIAREDMVVTVT 538 Query: 526 NRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KA 572 N G+I R+ K S ++ K+ D L +T +L S+ G K Sbjct: 539 NTGYIKRVPLSAYRAQKRGGKGRSGMNIKDEDFLTQVFVVNTHTPVLFFSSTGIAYKLKV 598 Query: 573 YTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVT--AFVYDSTC----KLLVVSSKGNAFIV 626 Y LP GN + G+A+ L+ L+ + I T D T ++ V+SKG+ Sbjct: 599 YRLPLGN---PQARGKAMVNLLPLDDGETISTIMPLPEDETTWGDLHVMFVTSKGDVRRN 655 Query: 627 EESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--DHVAVVGENRKLLIFSIDQIPEMSRG 684 S+ GK +K+ E++ V + D V + K + F + + E Sbjct: 656 PLSDFTEVRANGKIAMKLGEGERLISVQTCSAESDDVLLATHRGKAIRFPVQDVREFKSR 715 Query: 685 KGVRLQSYKDGGISDVICFKI 705 ++ + G +VI I Sbjct: 716 DSTGVRGIRLDGEDEVISMSI 736 >gi|149189884|ref|ZP_01868163.1| DNA gyrase, subunit A [Vibrio shilonii AK1] gi|148836199|gb|EDL53157.1| DNA gyrase, subunit A [Vibrio shilonii AK1] Length = 885 Score = 420 bits (1079), Expect = e-115, Method: Compositional matrix adjust. Identities = 243/605 (40%), Positives = 359/605 (59%), Gaps = 57/605 (9%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + V++ L YL YA+S I RA+PD+RDG KPVHRR++ AM+ +G D+ +KKSA Sbjct: 8 ITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSA 67 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG+IDGDSAAA RYTE RM Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVRM 127 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 ++A +L +D++ VD+ Y+ + P V P+K PNLL NG SGIAVGMAT+IP HN+ Sbjct: 128 AKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGASGIAVGMATNIPPHNL 187 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ + LA I N +I+I++L++YI GPDFPT +I R+ I+++Y+ GRG +R++ Sbjct: 188 NEVIDGCLAYIKNEDITIDELMDYIPGPDFPTAALI-SGRKGIIDAYKTGRGKVYMRSKA 246 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFP 315 +EE G I+VTEIPYQV K+RLIEKIAEL+ K++ + +RDES +D +RIV+ Sbjct: 247 EIEEDKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIEC 306 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 K ++ ++++ +++ + ++T F +NM L+ G+ PQ+ L +LK ++ HRREV+ RR Sbjct: 307 KRDAVG-EVVLNNLYSQTQLQTTFGINMVALNNGQ-PQLFNLKDMLKCFVDHRREVVTRR 364 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR------------ 420 + F ++ R IL+ L +A NIDE+I +I+N P K +VSR Sbjct: 365 TIFELRKARDRAHILEALSLALANIDEVIELIKNAPTPAEAKVGLVSRGWELGSVASMLE 424 Query: 421 ----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458 + LTE Q AIL LRL L LE +I E LL E Sbjct: 425 RAGTDAARPDWLEDQYGIRDGLYYLTEQQAQAILELRLHRLTGLEHEKILDEYKALLEEI 484 Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518 ++ +L S ++ I E+ V+ + RR+ E++ A + +I +E Sbjct: 485 AELMHILASTERLMEVITEELELVQATYGDE-----RRS---EITAAVHDIDMEELIARE 536 Query: 519 PITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570 + V +S+ G+++ + + SA KE D ++ L A+T D IL ST G Sbjct: 537 DVVVTLSHEGYVKYQILSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILCFSTRG 596 Query: 571 KAYTL 575 K Y L Sbjct: 597 KTYRL 601 >gi|294496881|ref|YP_003560581.1| DNA gyrase subunit A [Bacillus megaterium QM B1551] gi|294346818|gb|ADE67147.1| DNA gyrase, A subunit [Bacillus megaterium QM B1551] Length = 836 Score = 420 bits (1079), Expect = e-115, Method: Compositional matrix adjust. Identities = 226/568 (39%), Positives = 358/568 (63%), Gaps = 20/568 (3%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 ++ V++ + +L YA+S I RA+PD+RDG KPVHRRI++AM+++G+ +KKSA Sbjct: 9 IREVNISQEMRASFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMGSDKPYKKSA 68 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 RIVGEVIGK HPHGD +VY+++VR+AQ F RY LI G GNFG++DGD+AAA RYTEARM Sbjct: 69 RIVGEVIGKYHPHGDSAVYETMVRMAQDFSYRYMLIDGHGNFGSVDGDAAAAMRYTEARM 128 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 ++V+ +L+ +++D +D++D Y+ + EP+V P++FPNLL NG++GIAVGMAT+IP H + Sbjct: 129 SKVSMELLRDINKDTIDYQDNYDGSEREPIVLPARFPNLLVNGSAGIAVGMATNIPPHQL 188 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ + LA+ +P+I+I +L+E I GPDFPT G I+ R I ++Y G+G VRA+ Sbjct: 189 GEVIDGVLAVSQDPDITIAELMEIIPGPDFPTAGQIL-GRSGIRKAYETGKGSIIVRAKV 247 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316 +EE G I+V E+PYQV K++LIEKIAEL K+I + D+RDES ++ Sbjct: 248 EIEEQSNGKQTIIVHELPYQVNKAKLIEKIAELARDKKIDGITDLRDESDRSGMRIVIEV 307 Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376 R + ++L+ +++ + ++T F +N L G+ P+V+ L L+ +L H+ V+ RR+ Sbjct: 308 RRDANANVLLNNLYKQTSLQTSFGINTLALVDGQ-PKVLNLKQCLQYYLDHQVVVIRRRT 366 Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAILN 433 F ++ + R IL+GL IA N+D +IA+IR D + ++++FSL+E Q AIL+ Sbjct: 367 EFELRKAEARAHILEGLKIALDNLDAVIALIRGSQTTDIAREGLMTQFSLSEKQAQAILD 426 Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493 +RL+ L LE +I++E +LLA ++ ++L ++ I E+ EVKE F+ Sbjct: 427 MRLQRLTGLEREKIEAEYQSLLALIAELKAILADEEKVLEIIREELIEVKERFNDG---- 482 Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD--------LSALHF 545 RRT VS + + +I ++ I + +++ G+I+ L + + ++ Sbjct: 483 -RRTEI--VSGGAEIIEDEDLIPRQDIVISLTHNGYIKRLPVSTYKSQRRGGRGIQGMNT 539 Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAY 573 E D ++ L T D IL + GK Y Sbjct: 540 NEDDFVEHLLTTSTHDTILFFTNKGKVY 567 >gi|237732271|ref|ZP_04562752.1| DNA gyrase subunit A [Citrobacter sp. 30_2] gi|226907810|gb|EEH93728.1| DNA gyrase subunit A [Citrobacter sp. 30_2] Length = 879 Score = 419 bits (1078), Expect = e-115, Method: Compositional matrix adjust. Identities = 272/728 (37%), Positives = 408/728 (56%), Gaps = 69/728 (9%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + V++ L+ YL YA+S I RA+PD+RDG KPVHRR+++AM+ +G D+ A+KKSA Sbjct: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG++DGDSAAA RYTE RM Sbjct: 68 RVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRM 127 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 +++A ++ ++++ VDF D Y+ + P V P+K PNLL NG+SGIAVGMAT+IP HN+ Sbjct: 128 SKIAHELMADLEKETVDFVDNYDGTEQIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ LA ID+ +ISIE L+E+I GPDFPT II R I E+YR GRG +RAR Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAII-NGRRGIEEAYRTGRGKVYIRARA 246 Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314 VE + G I+V EIPYQV K+RLIEKIAEL+ KR+ + +RDES +D +RIV+ Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKDGMRIVIE 306 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K ++ ++++ +++ + ++ F +NM L G+ P++M L I+ ++ HRREV+ R Sbjct: 307 VKRDAVG-EVVLNNLYSQTQLQVSFGINMVALHHGQ-PKIMNLKDIIAAFVRHRREVVTR 364 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----------- 420 R+ F ++ R IL+ L IA NID II +IR P K +V+R Sbjct: 365 RTIFELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAALVARSWELGNVSAML 424 Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457 + LTE Q AIL+LRL+ L LE ++ E LL + Sbjct: 425 ERAGDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQ 484 Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ-QAMIE 516 ++ +L S + I E+ ++E F + RRT A+ A + + +I Sbjct: 485 IAELLHILGSADRLMEVIREEMELIREQFGDA-----RRTEIT----ANSADINIEDLIS 535 Query: 517 KEPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568 +E + V +S++G+++ + + SA KE D + L A+T D IL S+ Sbjct: 536 QEDVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSS 595 Query: 569 DGKAYTLPAGNLL-SGRG-HGEAIQLLIDLNHNQDIVTAFV----YDSTCKLLVVSSKGN 622 G+ Y + L + RG G I L+ L N+ I TA + Y+ + + ++ G Sbjct: 596 RGRLYWMKVYQLPEASRGARGRPIVNLLPLEANERI-TAILPVREYEEGVNVFMATASGT 654 Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEM 681 +E G + ++ +++ V +G D V + K++ F D + M Sbjct: 655 VKKTALTEFSRPRSAGIIAVNLNEGDELIGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAM 714 Query: 682 SR-GKGVR 688 R GVR Sbjct: 715 GRTATGVR 722 >gi|161610772|ref|NP_947941.2| DNA gyrase subunit A [Rhodopseudomonas palustris CGA009] Length = 913 Score = 419 bits (1078), Expect = e-115, Method: Compositional matrix adjust. Identities = 246/631 (38%), Positives = 358/631 (56%), Gaps = 55/631 (8%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 +++ VS+ ++ YL YA+S I RA+PD RDG KPVHRRI++ M E G ++ ++KS Sbjct: 17 DIRPVSILDEMKRSYLDYAMSVIVARALPDARDGLKPVHRRILYGMYENGFEWNKQYRKS 76 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 AR VG+VIGK HPHGDQSVYD+LVR+AQ F R PLI GQGNFG++DGD AA RYTE+R Sbjct: 77 ARTVGDVIGKYHPHGDQSVYDALVRMAQDFSMRVPLIDGQGNFGSVDGDMPAAMRYTESR 136 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 +T++A+ +L +D+D VDF+ Y+ + EP V P+KFPNLL NG GIAVGMAT+IP HN Sbjct: 137 LTKIAQTLLDDIDKDTVDFQPNYDNSEREPQVLPAKFPNLLVNGAGGIAVGMATNIPPHN 196 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 + E+ +A +ALID+P +SI+ L + + GPDFPTGGII+ R I +Y+ GRG +R + Sbjct: 197 LGEVIDACIALIDDPALSIDDLNKIVPGPDFPTGGIIL-GRAGIRAAYQTGRGSIVMRGK 255 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315 +E V + I+V+EIPYQV K+ ++E+IAEL+ K+I + D+RDES D V+ Sbjct: 256 VEIETVRKDREAIIVSEIPYQVNKATMVERIAELVREKKIEGIGDLRDESDRDGFRVVIE 315 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 R P++++ ++ + ++T F NM L GR PQ+M L +L ++A R +V+ RR Sbjct: 316 LRRDAVPEVVLNQLYKFTPLQTNFGANMVALEGGR-PQLMNLKDLLTVFVAFREQVVTRR 374 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR------------ 420 + F + R IL GL IA NIDEII +IRN P + ++SR Sbjct: 375 TKFLLNKARDRAHILVGLAIAVANIDEIIRVIRNSPDPNTARETLMSRDWPAADVAAMIT 434 Query: 421 --------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466 L+ Q AIL+LRL+ L L +I ELD L E +L Sbjct: 435 LIDDPRHKLNPDGTARLSFEQAKAILDLRLQRLTALGREEISEELDKLAVEIADYLEILR 494 Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526 S + + E+ EVK F+ RRT E + + +I++E + V +S+ Sbjct: 495 SRARVQAIVKTELGEVKAEFATP-----RRTVIAE---QEGEVEDEDLIQREDMVVTVSH 546 Query: 527 RGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---- 574 G++ R+ + S + +E D + A T +L S+ G+ Y Sbjct: 547 AGYVKRVPLSTYRAQRRGGKGRSGMATREEDFVSRLFVASTHTPVLFFSSRGQVYKEKVW 606 Query: 575 -LPAGNLLSGRGHGEAIQLLIDLNHNQDIVT 604 LP L G G+A+ ++ L + I T Sbjct: 607 RLP---LAPPNGRGKALINILPLEQGERITT 634 >gi|192291247|ref|YP_001991852.1| DNA gyrase subunit A [Rhodopseudomonas palustris TIE-1] gi|192284996|gb|ACF01377.1| DNA gyrase, A subunit [Rhodopseudomonas palustris TIE-1] Length = 913 Score = 419 bits (1078), Expect = e-115, Method: Compositional matrix adjust. Identities = 246/631 (38%), Positives = 358/631 (56%), Gaps = 55/631 (8%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 +++ VS+ ++ YL YA+S I RA+PD RDG KPVHRRI++ M E G ++ ++KS Sbjct: 17 DIRPVSILDEMKRSYLDYAMSVIVARALPDARDGLKPVHRRILYGMYENGFEWNKQYRKS 76 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 AR VG+VIGK HPHGDQSVYD+LVR+AQ F R PLI GQGNFG++DGD AA RYTE+R Sbjct: 77 ARTVGDVIGKYHPHGDQSVYDALVRMAQDFSMRVPLIDGQGNFGSVDGDMPAAMRYTESR 136 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 +T++A+ +L +D+D VDF+ Y+ + EP V P+KFPNLL NG GIAVGMAT+IP HN Sbjct: 137 LTKIAQTLLDDIDKDTVDFQPNYDNSEREPQVLPAKFPNLLVNGAGGIAVGMATNIPPHN 196 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 + E+ +A +ALID+P +SI+ L + + GPDFPTGGII+ R I +Y+ GRG +R + Sbjct: 197 LGEVIDACIALIDDPALSIDDLNKIVPGPDFPTGGIIL-GRAGIRAAYQTGRGSIVMRGK 255 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315 +E V + I+V+EIPYQV K+ ++E+IAEL+ K+I + D+RDES D V+ Sbjct: 256 VEIETVRKDREAIIVSEIPYQVNKATMVERIAELVREKKIEGIGDLRDESDRDGFRVVIE 315 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 R P++++ ++ + ++T F NM L GR PQ+M L +L ++A R +V+ RR Sbjct: 316 LRRDAVPEVVLNQLYKFTPLQTNFGANMVALEGGR-PQLMNLKDLLTVFVAFREQVVTRR 374 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR------------ 420 + F + R IL GL IA NIDEII +IRN P + ++SR Sbjct: 375 TKFLLNKARDRAHILVGLAIAVANIDEIIRVIRNSPDPNTARETLMSRDWPAADVAAMIT 434 Query: 421 --------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466 L+ Q AIL+LRL+ L L +I ELD L E +L Sbjct: 435 LIDDPRHKLNPDGTARLSFEQAKAILDLRLQRLTALGREEISEELDKLAVEIADYLEILR 494 Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526 S + + E+ EVK F+ RRT E + + +I++E + V +S+ Sbjct: 495 SRARVQAIVKTELGEVKAEFATP-----RRTVIAE---QEGEVEDEDLIQREDMVVTVSH 546 Query: 527 RGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---- 574 G++ R+ + S + +E D + A T +L S+ G+ Y Sbjct: 547 AGYVKRVPLSTYRAQRRGGKGRSGMATREEDFVSRLFVASTHTPVLFFSSRGQVYKEKVW 606 Query: 575 -LPAGNLLSGRGHGEAIQLLIDLNHNQDIVT 604 LP L G G+A+ ++ L + I T Sbjct: 607 RLP---LAPPNGRGKALINILPLEQGERITT 634 >gi|295702248|ref|YP_003595323.1| DNA gyrase subunit A [Bacillus megaterium DSM 319] gi|294799907|gb|ADF36973.1| DNA gyrase, A subunit [Bacillus megaterium DSM 319] Length = 836 Score = 419 bits (1078), Expect = e-115, Method: Compositional matrix adjust. Identities = 226/568 (39%), Positives = 358/568 (63%), Gaps = 20/568 (3%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 ++ V++ + +L YA+S I RA+PD+RDG KPVHRRI++AM+++G+ +KKSA Sbjct: 9 IREVNISQEMRASFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMGSDKPYKKSA 68 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 RIVGEVIGK HPHGD +VY+++VR+AQ F RY LI G GNFG++DGD+AAA RYTEARM Sbjct: 69 RIVGEVIGKYHPHGDSAVYETMVRMAQDFSYRYMLIDGHGNFGSVDGDAAAAMRYTEARM 128 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 ++V+ +L+ +++D +D++D Y+ + EP+V P++FPNLL NG++GIAVGMAT+IP H + Sbjct: 129 SKVSMELLRDINKDTIDYQDNYDGSEREPIVLPARFPNLLVNGSAGIAVGMATNIPPHQL 188 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ + LA+ +P+I+I +L+E I GPDFPT G I+ R I ++Y G+G VRA+ Sbjct: 189 GEVIDGVLAVSQDPDITIAELMEIIPGPDFPTAGQIL-GRSGIRKAYETGKGSIIVRAKV 247 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316 +EE G I+V E+PYQV K++LIEKIAEL K+I + D+RDES ++ Sbjct: 248 EIEEQSNGKQTIIVHELPYQVNKAKLIEKIAELARDKKIDGITDLRDESDRSGMRIVIEV 307 Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376 R + ++L+ +++ + ++T F +N L G+ P+V+ L L+ +L H+ V+ RR+ Sbjct: 308 RRDANANVLLNNLYKQTSLQTSFGINTLALVDGQ-PKVLNLKQCLQYYLDHQVVVIRRRT 366 Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAILN 433 F ++ + R IL+GL IA N+D +IA+IR D + ++++FSL+E Q AIL+ Sbjct: 367 EFELRKAEARAHILEGLKIALDNLDAVIALIRGSQTTDIAREGLMTQFSLSEKQAQAILD 426 Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493 +RL+ L LE +I++E +LLA ++ ++L ++ I E+ EVKE F+ Sbjct: 427 MRLQRLTGLEREKIEAEYQSLLALIAELKAILADEEKVLEIIREELIEVKERFNDG---- 482 Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD--------LSALHF 545 RRT VS + + +I ++ I + +++ G+I+ L + + ++ Sbjct: 483 -RRTEI--VSGGAEIIEDEDLIPRQDIVISLTHNGYIKRLPVSTYKSQRRGGRGIQGMNT 539 Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAY 573 E D ++ L T D IL + GK Y Sbjct: 540 NEDDFVEHLLTTSTHDTILFFTNKGKVY 567 >gi|330814109|ref|YP_004358348.1| DNA gyrase subunit A [Candidatus Pelagibacter sp. IMCC9063] gi|327487204|gb|AEA81609.1| DNA gyrase subunit A [Candidatus Pelagibacter sp. IMCC9063] Length = 877 Score = 419 bits (1078), Expect = e-115, Method: Compositional matrix adjust. Identities = 256/689 (37%), Positives = 394/689 (57%), Gaps = 67/689 (9%) Query: 12 LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71 +V++ ++ ++ ++ YL+YA+S I RA+PD RDG KPVHRRII AM + G D+ Sbjct: 1 MVDKKIEIRNVTDEMKASYLSYAMSVIVSRALPDARDGLKPVHRRIIFAMYKGGYDWSKQ 60 Query: 72 FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131 F+KSAR+VG+VIGK HPHGDQ+VYD+LVRLAQ F L+ GQGNFG++DGD AAA RY Sbjct: 61 FRKSARVVGDVIGKYHPHGDQAVYDALVRLAQDFSMSLTLLDGQGNFGSLDGDRAAAMRY 120 Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191 TE R+ +VAE ++ +D++ VDF++ Y++ + EPVV P+++PNLL NG SGIAVGMAT+I Sbjct: 121 TETRLAKVAEFLISDIDKNTVDFQNNYDDTELEPVVLPAQYPNLLVNGASGIAVGMATNI 180 Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251 P HN+ E+ E L IDN EI+I++L++ I GPDFPTGGII+ + I+ Y GRG + Sbjct: 181 PPHNLGEVIEGTLKYIDNNEITIKELMKVIPGPDFPTGGIII-GQNDIIPGYEKGRGSIK 239 Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VR 310 +R VEE + IV+ +PYQV K+ LIEKIAELI K+I + D+RDES +D VR Sbjct: 240 IRGEIEVEEGSKDKKIIVIKSVPYQVNKTVLIEKIAELIRDKKIEGISDLRDESNKDGVR 299 Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370 I + K +++ +++ ++ S ++T F N ++ + P+++ L +K ++ R + Sbjct: 300 IAITVK-KNVSEAIIINQLYKFSPLQTSFGFNTLAINEKK-PELLNLKQFIKIFVDFREK 357 Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR------- 420 VL +R+ F ++ R IL GL I+ NIDE+I+IIR P K ++ + Sbjct: 358 VLTKRTLFELKKAKDRTHILIGLFISIENIDEVISIIRKSKDPSEAKATLLKKVWSFQKS 417 Query: 421 -----------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDS 463 + L+++QV AIL LRL+ L + +I SEL +L K Sbjct: 418 KIDKDVLEVNELSTKKEYQLSDHQVKAILELRLQKLTNIGHEEINSELQDLYKLIVKYKK 477 Query: 464 LLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVV 523 +LN K+ N I E+ E+K+ F+ + RR V D + +I++E + V Sbjct: 478 ILNDKKELQNLIKTELAEIKKKFA----VPRRTKLVGAVENVD----VEDVIQEEKVIVT 529 Query: 524 ISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG----- 570 ++N+G+ IR+ K + + +E D + T +L S+ G Sbjct: 530 VTNKGYIKRTPLTSIRAQKRGGKGKTGIVTREEDFVSQLFPVSTLTPVLFFSSKGIVYRL 589 Query: 571 KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI--VTAFVYD-STCK---LLVVSSKG--- 621 KA+ +P G S G+A+ + + + I + YD ST K L+ V++ G Sbjct: 590 KAWKIPEG---SNTSKGKALANIFPIKADAQISSILPLPYDQSTWKDNFLIFVTANGKIR 646 Query: 622 NAFIVEESEIIANTRKGKTFLKVSSEEKM 650 I++ I AN GK +K+ ++K+ Sbjct: 647 KNSILDFENIQAN---GKIAMKLEKDDKI 672 >gi|78185988|ref|YP_374031.1| DNA gyrase, subunit A [Chlorobium luteolum DSM 273] gi|78165890|gb|ABB22988.1| DNA gyrase subunit A [Chlorobium luteolum DSM 273] Length = 815 Score = 419 bits (1078), Expect = e-115, Method: Compositional matrix adjust. Identities = 249/677 (36%), Positives = 382/677 (56%), Gaps = 38/677 (5%) Query: 30 YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89 YL Y++S I RA+PD+RDG KPVHRR+++ M E+GL G KKSAR+VGEV+GK HPH Sbjct: 5 YLDYSMSVIVSRALPDVRDGLKPVHRRVLYGMHELGLQAGKPHKKSARVVGEVLGKFHPH 64 Query: 90 GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDE 149 GD +VYDSLVRL Q F RYPLI GQGNFG+IDGDS AA RYTE RM Q+A +L+ +D+ Sbjct: 65 GDTAVYDSLVRLVQDFSLRYPLIDGQGNFGSIDGDSPAAMRYTEVRMKQIAGEMLKDLDK 124 Query: 150 DAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDN 209 + VDF +++ EP V PS PNLL NG SGIAVGMAT+IP N++E+ + +ALI N Sbjct: 125 ETVDFALNFDDSLEEPTVLPSSIPNLLVNGASGIAVGMATNIPPQNLREVVDGMIALIGN 184 Query: 210 PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGR-GSWCI 268 PE+ + L++++I PDFPT GII E + ++Y GRG +RAR +E + G I Sbjct: 185 PELEVSDLMKFVIAPDFPTAGIIY-GYEGVRQAYLTGRGKVVIRARALIEVTQKNGRESI 243 Query: 269 VVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMES 328 VVTE+PYQV K RLIEKI EL+ K+I + DIRDES D ++ R +++ + Sbjct: 244 VVTELPYQVNKVRLIEKIVELVHDKKIEGIADIRDESDRDGMRLVIELKRDAVAKVVLNN 303 Query: 329 IFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVE 388 ++ + M+ F + M L G VP+++ L +++ ++ HR E++ RR+ F + A +RR Sbjct: 304 LYKHTPMQDTFGVIMLALVDG-VPRILNLKEMMQYYIKHRNEIVLRRTRFDLAAAERRAH 362 Query: 389 ILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEY 445 IL+GL I N+DE+I IR + + + ++ RF+L+E Q AIL +RL+ L +E Sbjct: 363 ILEGLKICLDNLDEVITTIRESPDANTAQDRLMERFALSEIQAKAILEMRLQRLTGMERQ 422 Query: 446 QIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRA 505 +I +E LA +++ +L S ++Q I E+ +VKE++ RRT E+ Sbjct: 423 KIDAEYKETLATIDELRLILQSPERQMEIIRTELLKVKEVYGDE-----RRT---EIVPQ 474 Query: 506 DKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DLSALHFKEGDSLKIALHA 557 + + MI +E + + +++ G+I+ ++ K D ++ A Sbjct: 475 EGDFSIEDMIAQEDVVITVTHDGFIKRFPVSGYRRQARGGKGVTGAQAKHDDFIEHMFVA 534 Query: 558 HTTDRILLLSTDG-----KAYTLP-AGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV---- 607 T + IL + G K Y +P AG GR ++L H + + A++ Sbjct: 535 STHNYILFFTNTGRCYWLKVYEIPEAGRAARGRALANIMEL-----HPDEKIKAYINIRN 589 Query: 608 YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGEN 667 +D +++ ++ G E R G + + + + GDH ++ ++ Sbjct: 590 FDEPGYIIMATADGIVKKTALEEFSRPRRNGIAAITIDEGDALLDARLTDGDHQVILAKS 649 Query: 668 RKLLI-FSIDQIPEMSR 683 L++ F Q+ M R Sbjct: 650 SGLVVRFPEVQVRPMGR 666 >gi|77463183|ref|YP_352687.1| DNA gyrase subunit A [Rhodobacter sphaeroides 2.4.1] gi|77387601|gb|ABA78786.1| DNA gyrase/topoisomerase IV, subunit A [Rhodobacter sphaeroides 2.4.1] Length = 907 Score = 419 bits (1078), Expect = e-115, Method: Compositional matrix adjust. Identities = 254/671 (37%), Positives = 385/671 (57%), Gaps = 57/671 (8%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 VS+ ++ YL YA+S I RAIPDLRDG KPVHRRI++AM E G ++KSAR V Sbjct: 11 VSIAEEMKTAYLDYAMSVIVSRAIPDLRDGLKPVHRRILYAMHETGNTHDKPYRKSARPV 70 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+ +GK HPHGD ++YD+LVR+AQPF L+ GQGNFG++DGD+AAA RYTE RM + Sbjct: 71 GDTMGKYHPHGDGAIYDALVRMAQPFSMGLKLLDGQGNFGSMDGDNAAAMRYTEVRMDKP 130 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A +L +D+D VDF+D Y+ +D EP V P++FPN+L NG GIAVGMAT+IP HN+ E+ Sbjct: 131 AAFLLADIDKDTVDFQDNYDGKDREPTVLPARFPNMLVNGAGGIAVGMATNIPPHNLGEV 190 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 +A LA+I+NP+IS E+L+E I GPDFPTGG+I+ R ++Y GRG +RA+ VE Sbjct: 191 VDATLAMIENPDISTERLMEIIPGPDFPTGGVIL-GRSGARKAYLEGRGSVIMRAKARVE 249 Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE-DVRIVLFPKNR 318 E+ + + IV+ EIPYQV K+ +IEKIA+++ K+I + ++DES VR+V+ K R Sbjct: 250 EIRKDRYAIVLDEIPYQVNKATMIEKIADMVREKKIEGIAHVQDESDRVGVRVVIELK-R 308 Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378 P++++ ++ + M+T F NM L+ GR P+ + L L +L R +V+ RR+++ Sbjct: 309 DATPEVVLNQLWRFTPMQTTFGCNMLALNGGR-PEQLTLRDFLSHFLTFREDVVARRTAY 367 Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP----KPVMVSR-------------- 420 ++ R IL GL +A N+DE++A IR+ P + +M R Sbjct: 368 ELRKARERSHILCGLAVAVSNVDEVVATIRSSADPAEARERLMTRRWPAADIADYIRLID 427 Query: 421 -----------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGK 469 ++L+E Q AIL+LRL+ L + ++ EL L A+ +L S + Sbjct: 428 DPSHTINEDGTYNLSEIQARAILDLRLQRLTAMGVKEVTDELAELAAKIRDYLDILGSRE 487 Query: 470 QQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW 529 + I+ E+REVK++F+ RRT E+S + +IE+E + V I++ G+ Sbjct: 488 RIMAIISDELREVKDLFAVP-----RRT---EISEWAGDLEDEDLIEREDMVVTITSGGY 539 Query: 530 I--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL- 580 I RS + L+++ KE D + A+T ++L +TDG Y L L Sbjct: 540 IKRTPLAEFRSQRRGGKGLASMATKEDDVVTTLFVANTHTQLLFFTTDGMVYDLKCWRLP 599 Query: 581 LSGR-GHGEAIQLLIDLNHNQDIVTAFVYDST------CKLLVVSSKGNAFIVEESEIIA 633 L GR G+AI ++ + I D +++ +S+G+ S+ Sbjct: 600 LGGRTAKGKAIVNILPIATGISIAALMKIDEPEEEWDRLQVVFATSEGDVRRNRLSDFTN 659 Query: 634 NTRKGKTFLKV 644 R GK +K+ Sbjct: 660 VKRNGKIAMKL 670 >gi|292488816|ref|YP_003531703.1| DNA gyrase subunit A [Erwinia amylovora CFBP1430] gi|292899967|ref|YP_003539336.1| DNA gyrase subunit A [Erwinia amylovora ATCC 49946] gi|291199815|emb|CBJ46938.1| DNA gyrase subunit A [Erwinia amylovora ATCC 49946] gi|291554250|emb|CBA21544.1| DNA gyrase, A subunit [Erwinia amylovora CFBP1430] gi|312172974|emb|CBX81229.1| DNA gyrase, A subunit [Erwinia amylovora ATCC BAA-2158] Length = 878 Score = 419 bits (1078), Expect = e-115, Method: Compositional matrix adjust. Identities = 252/637 (39%), Positives = 375/637 (58%), Gaps = 60/637 (9%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + V++ L+ YL YA+S I RA+PD+RDG KPVHRR+++AM+ +G D+ A+KKSA Sbjct: 8 ITPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG++DGDSAAA RYTE RM Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEVRM 127 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 +++A +L ++++ VDF Y+ + P V P++ PNLL NG+SGIAVGMAT+IP HN+ Sbjct: 128 SKIAHELLADLEKETVDFVPNYDGTEQIPEVMPTRIPNLLINGSSGIAVGMATNIPPHNI 187 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ LA I + I++E L+E+I GPDFPT II R I E+YR GRG +RAR Sbjct: 188 TEVINGCLAYIADENITVEGLMEHIPGPDFPTAAII-NGRRGIEEAYRTGRGKIYIRARG 246 Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314 VE + G I+V EIPYQV K+RLIEKIAEL+ KR+ + +RDES +D +RIV+ Sbjct: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRLEGISALRDESDKDGMRIVIE 306 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K ++ ++++ +++ L+ ++T F +NM L G+ P++MPL IL+ ++ HRREV+ R Sbjct: 307 VKRDAVG-EVVLNNLYSLTQLQTSFGINMVALHQGQ-PKIMPLKDILEAFVRHRREVITR 364 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----------- 420 R+ F ++ R IL+ L +A NID II +IR P K +++R Sbjct: 365 RTIFELRKARDRAHILEALAVALANIDPIIELIRAAPTPAEAKAGLIARPWELGNVSAML 424 Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457 + LTE Q AIL+LRL+ L LE ++ E +LLA+ Sbjct: 425 ERAGDNAARPEWLEEQYGIHNGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKDLLAQ 484 Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517 ++ +L S ++ I E+ +++ F G +R T + AD + +I + Sbjct: 485 IAELLRILASSERLMEVIREELELIRDQF------GDKRRTEITANTADINI--EDLINQ 536 Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569 E + V +S++G+++ + + SA KE D + L A+T D IL S+ Sbjct: 537 EDVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSR 596 Query: 570 GKAYTLPAGNLL-SGRG-HGEAIQLLIDLNHNQDIVT 604 G+ Y + L + RG G I L+ L N+ I Sbjct: 597 GRLYWMKVYQLPEASRGARGRPIVNLLPLEANERITA 633 >gi|56696919|ref|YP_167281.1| DNA gyrase subunit A [Ruegeria pomeroyi DSS-3] gi|56678656|gb|AAV95322.1| DNA gyrase, A subunit [Ruegeria pomeroyi DSS-3] Length = 891 Score = 419 bits (1078), Expect = e-115, Method: Compositional matrix adjust. Identities = 254/674 (37%), Positives = 385/674 (57%), Gaps = 57/674 (8%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 VS+ + YL YA+S I RAIPDLRDG KPVHRRI++AM E G ++KSAR V Sbjct: 5 VSIESEMRTSYLDYAMSVIVSRAIPDLRDGLKPVHRRILYAMHETGNGHDKPYRKSARPV 64 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+V+GK HPHGD ++YD+LVR+AQ F PL+ GQGNFG++DGD+ AA RYTE RM + Sbjct: 65 GDVMGKYHPHGDSAIYDALVRMAQDFSMSLPLLDGQGNFGSMDGDNPAAMRYTEVRMDKP 124 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A +L +D++ VDF+D Y+ +D EP V P++FPN+L NG GIAVGMAT+IP HN+ E+ Sbjct: 125 AAFLLSDIDKETVDFQDNYDGKDREPTVLPARFPNMLVNGAGGIAVGMATNIPPHNLGEV 184 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 +A LALID+P+++ E+L++Y+ GPDFPTGG+++ R ++Y GRG +RA+ VE Sbjct: 185 VDATLALIDDPDLTSEQLIDYVPGPDFPTGGVML-GRSGARKAYLEGRGSVIIRAKTRVE 243 Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKNR 318 E+ + + I+V EIPYQV K+ +IEKIAE + KRI + ++DES + VR+V+ K R Sbjct: 244 ELRKDRYAIIVDEIPYQVNKATMIEKIAEAVREKRIEGVAHVQDESDRNGVRVVVELK-R 302 Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378 P++++ ++ S M+T F NM L+ GR P+ + L L ++ R EV+ RR++ Sbjct: 303 DATPEVVLNQLYRFSPMQTSFGCNMLALNGGR-PEQLTLRRFLTCFIDFREEVVARRTAH 361 Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE----DKPKPVMVSR-------------- 420 ++ R +L GL +A N+DE++A IR+ D + +M R Sbjct: 362 DLRKARERSHVLCGLAVAVSNVDEVVATIRSSADAADAREKLMTRRWPAADIAAYLRLID 421 Query: 421 -----------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGK 469 ++LTE Q AIL+LRL+ L +L ++ EL+ L + ++ +L S + Sbjct: 422 DPLSKMNEDGTYNLTEVQARAILDLRLQRLTQLGVKEVTDELEVLAGKIKEYLEILGSRE 481 Query: 470 QQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW 529 + IA E+REV+E F+ RRT + S + +IE+E + V +++ G+ Sbjct: 482 RIMGIIADELREVREQFAVP-----RRTEIVDWS---GDMEDEDLIEREDMVVTVTSGGY 533 Query: 530 I--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL- 580 I R+ K LS + KE D + A+T ++L +TDG Y L L Sbjct: 534 IKRTPLADFRAQKRGGKGLSGMQTKEEDVVTTLFVANTHTQLLFFTTDGMVYKLKTWRLP 593 Query: 581 LSGR-GHGEAIQLLIDLNHNQDIVTAFVYD------STCKLLVVSSKGNAFIVEESEIIA 633 SGR G G+AI ++ + I D +++ +S G+ S+ Sbjct: 594 QSGRTGKGKAIVNILPIPTGVSIAAIMPVDVPDEEWDALQIVFATSAGDVRRNALSDFTN 653 Query: 634 NTRKGKTFLKVSSE 647 R GK +K+ + Sbjct: 654 VKRNGKIAMKLPED 667 >gi|239996349|ref|ZP_04716873.1| DNA gyrase, A subunit [Alteromonas macleodii ATCC 27126] Length = 904 Score = 419 bits (1078), Expect = e-115, Method: Compositional matrix adjust. Identities = 255/632 (40%), Positives = 364/632 (57%), Gaps = 59/632 (9%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 V++ L+ YL YA+S I RA+PD+RDG KPVHRR++ AM+E+ DF +KKSAR+V Sbjct: 11 VNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELKNDFNKPYKKSARVV 70 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG++DGDSAAA RYTE RM ++ Sbjct: 71 GDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEVRMAKI 130 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A +L +D++ VDF Y+ + P V P+K PNLL NG+SGIAVGMAT+IP HN+ E+ Sbjct: 131 AHELLADLDKETVDFVPNYDGTEHIPEVLPTKVPNLLVNGSSGIAVGMATNIPPHNLTEV 190 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 +ALI +P I+I+ L+ +I GPDFPT +I R+ I ++YR GRG +RA+ +E Sbjct: 191 INGCVALIQDPSITIDDLMTHIPGPDFPTAAMI-SGRKGIEDAYRTGRGKIYLRAKAEIE 249 Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKNR 318 G IVV EIPYQV K+RLIEKIAEL+ KRI + +RDES +D +RIV+ K R Sbjct: 250 TDSNGKETIVVNEIPYQVNKARLIEKIAELVKEKRIEGVSALRDESDKDGMRIVIEVK-R 308 Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378 + ++L+ ++ + ++T F +NM L G+ P+V L L+ ++ HRREV+ RR+ F Sbjct: 309 NESAEVLLNHLYANTQLQTVFGINMVALDNGQ-PKVFNLKETLECFILHRREVVTRRTVF 367 Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVS---------------- 419 ++ R IL+GL IA NID II +I+ P K +V+ Sbjct: 368 ELRKARDRAHILEGLAIALANIDPIIELIKASQSPADAKKSLVAQGWDLGDVAQMLERAG 427 Query: 420 ------------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKI 461 ++ LTE Q AIL+LRL L LE +I E LL ++ Sbjct: 428 DDAARPDWLMPEFGIRDGKYYLTEQQAQAILDLRLHKLTGLEHEKILEEYKQLLEIIAEL 487 Query: 462 DSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPIT 521 +LNS ++ I E+ +V++ F RRT E++ A + +IE+E + Sbjct: 488 LHILNSPERLMEVIQEELEKVRDEFGDE-----RRT---EITAASHDIDIEDLIEQEDVV 539 Query: 522 VVISNRGWIRSLKSHSVDL--------SALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573 V +S G+++ K + SA K+ D ++ L A+T D IL ST G+ Y Sbjct: 540 VTLSREGYVKYQKLTDYEAQRRGGRGKSATKMKDEDFIERLLVANTHDHILCFSTRGRLY 599 Query: 574 TLPAGNL--LSGRGHGEAIQLLIDLNHNQDIV 603 L L S G I ++ L N+ I Sbjct: 600 WLKVYQLPFASRNARGRPIVNILPLEENERIT 631 >gi|204928981|ref|ZP_03220124.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|204321525|gb|EDZ06724.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] Length = 878 Score = 419 bits (1078), Expect = e-115, Method: Compositional matrix adjust. Identities = 277/747 (37%), Positives = 412/747 (55%), Gaps = 69/747 (9%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + V++ L+ YL YA+S I RA+PD+RDG KPVHRR+++AM+ +G D+ A+KKSA Sbjct: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG+IDGDSAAA RYTE R+ Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 ++A ++ ++++ VDF D Y+ + P V P+K PNLL NG+SGIAVGMAT+IP HN+ Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ LA IDN +ISIE L+E+I GPDFPT II R I E+YR GRG +RAR Sbjct: 188 TEVINGCLAYIDNEDISIEGLMEHIPGPDFPTAAII-NGRRGIEEAYRTGRGKVYIRARA 246 Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314 VE + G I+V EIPYQV K+RLIEKIAEL+ KR+ + +RDES +D +RIV+ Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKDGMRIVIE 306 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K ++ ++++ +++ + ++ F +NM L G+ P++M L I+ ++ HRREV+ R Sbjct: 307 VKRDAVG-EVVLNNLYSQTQLQVSFGINMVALHHGQ-PKIMNLKDIISAFVRHRREVVTR 364 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----------- 420 R+ F ++ R IL+ L IA NID II +IR P K ++SR Sbjct: 365 RTIFELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAALISRPWDLGNVAAML 424 Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457 + LTE Q AIL+LRL+ L LE ++ +E LL + Sbjct: 425 ERAGDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLNEYKELLEQ 484 Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517 ++ +L S + I E+ +++ F G R T + AD + +I + Sbjct: 485 IAELLHILGSADRLMEVIREEMELIRDQF------GDERRTEITANSADINI--EDLISQ 536 Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569 E + V +S++G+++ + + SA KE D + L A+T D IL S+ Sbjct: 537 EDVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSR 596 Query: 570 GKAYTLPAGNLL-SGRG-HGEAIQLLIDLNHNQDIVTAFV----YDSTCKLLVVSSKGNA 623 G+ Y + L + RG G I L+ L N+ I TA + Y+ + + ++ G Sbjct: 597 GRLYWMKVYQLPEASRGARGRPIVNLLPLEANERI-TAILPVREYEEGVNVFMATASGTV 655 Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMS 682 +E G + ++ +++ V +G D V + K++ F D + M Sbjct: 656 KKTALTEFSRPRSAGIIAVNLNDGDELIGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAMG 715 Query: 683 R-GKGVRLQSYKDGGISDVICFKICEG 708 R GVR K G V+ I G Sbjct: 716 RTATGVR--GIKLAGDDKVVSLIIPRG 740 >gi|209964380|ref|YP_002297295.1| DNA gyrase, A subunit [Rhodospirillum centenum SW] gi|209957846|gb|ACI98482.1| DNA gyrase, A subunit [Rhodospirillum centenum SW] Length = 922 Score = 419 bits (1078), Expect = e-115, Method: Compositional matrix adjust. Identities = 242/632 (38%), Positives = 365/632 (57%), Gaps = 53/632 (8%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 ++ +++ + YL YA+S I RA+PD+RDG KPVHRRI++AM + G D +KKS Sbjct: 10 DISPITIEEEMRRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYAMKDGGYDSTKPYKKS 69 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 ARIVG+V+GK HPHGD ++YD++VR+AQ F R PLI GQGN+G++DGD AA RYTEAR Sbjct: 70 ARIVGDVMGKYHPHGDGAIYDAMVRMAQDFSMRLPLIDGQGNYGSMDGDPPAAMRYTEAR 129 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 + + AE +L +D++ VDF+ Y+E EP V P+KFPNLL NG GIAVGMAT+IP+HN Sbjct: 130 LAKAAEFLLDDIDKETVDFQPNYDESSLEPTVLPAKFPNLLVNGAGGIAVGMATNIPTHN 189 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 + E+ +A A IDNPEI+I++L++ + GPDFPTG +I+ R I +Y GRG +RA+ Sbjct: 190 LGEVIDACCAYIDNPEITIDELIDIVPGPDFPTGALIL-GRSGIRSAYHTGRGSIVMRAK 248 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314 +EE+ + W IVVTEIPYQV K++L E+IAE++ K + + D+RDES D VR+V+ Sbjct: 249 TDIEEIRKDRWAIVVTEIPYQVNKAKLQERIAEVVHEKLVEGISDVRDESDRDGVRVVIE 308 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K R D+++ +F + ++T F +NM L+ GR P+++ L I+ ++ R +V+ R Sbjct: 309 LK-RDAVADVVLNQLFRFTPLQTSFGVNMLALNGGR-PELLDLKSIIAAFVRFREQVITR 366 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----------- 420 R+ F + R L GL +A NIDE+IA+IRN P + M++R Sbjct: 367 RTEFELGKARERAHTLVGLAVAVANIDEMIALIRNAPDPGTAREQMMAREWPALDVAPLI 426 Query: 421 ---------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLL 465 + L+E Q AIL+LRL L LE +I EL+ ++ + + ++L Sbjct: 427 QLIDEPGRGLSEAGTYRLSEGQAKAILDLRLHRLTGLERDKISEELNQVVDQIRHLLAIL 486 Query: 466 NSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVS-RADKATLQQAMIEKEPITVVI 524 + + E+ ++K F RRTT E+ AD L I++E + V++ Sbjct: 487 ADRGLLLDILRGELVDMKARFGNP-----RRTTIEELEFEADVEDL----IQREDMVVIV 537 Query: 525 SNRGWIRSLKSHSVDL--------SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLP 576 + G+I+ + + S + K D++ A+T +L + G YTL Sbjct: 538 TQGGYIKRVPVSTYRAQARGGKGRSGMSLKAEDTVSDLFVANTHTPMLFFTNRGMVYTLK 597 Query: 577 AGNLLSG--RGHGEAIQLLIDLNHNQDIVTAF 606 L G + G+A+ L+ L I T Sbjct: 598 VWRLPQGTPQTRGKALVNLLPLEEGDFITTVM 629 >gi|329312729|gb|AEB87142.1| DNA gyrase subunit A [Staphylococcus aureus subsp. aureus T0131] Length = 886 Score = 419 bits (1078), Expect = e-115, Method: Compositional matrix adjust. Identities = 251/670 (37%), Positives = 399/670 (59%), Gaps = 37/670 (5%) Query: 26 LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85 + E +L YA+S I RA+PD+RDG KPVHRRI++ ++E G+ ++KKSARIVG+V+GK Sbjct: 18 MRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDKSYKKSARIVGDVMGK 77 Query: 86 LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145 HPHGD S+Y+++VR+AQ F RYPL+ QGNFG++DGD AAA RYTEARMT++ +L+ Sbjct: 78 YHPHGDLSIYEAMVRMAQDFSYRYPLVDDQGNFGSMDGDGAAAMRYTEARMTKITLELLR 137 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 +++D +DF D Y+ + EP V P++FPNLLANG SGIAVGMAT+IP HN+ E+ L+ Sbjct: 138 DINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATNIPPHNLTELINGVLS 197 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265 L NP+ISI +L+E I GPDFPT G+I+ + I +Y GRG ++R+R +EE G G Sbjct: 198 LSKNPDISIAELMEDIEGPDFPTAGLIL-GKSGIRRAYETGRGSIQMRSRAVIEERGGGR 256 Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA--EDVRIVLFPKNRSLDPD 323 IVVTEIP+QV K+R+IEKIAEL+ K+I + D+RDE++ VR+V+ + + + Sbjct: 257 QRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRVVIDVR-KDANAS 315 Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383 +++ +++ + ++T F +NM L GR P+++ L L +L H++ V+ RR+ + ++ Sbjct: 316 VILNNLYKQTPLQTSFGVNMIALVNGR-PKLINLKEALVHYLEHQKTVVRRRTQYNLRKA 374 Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVDAILNLRLRSLR 440 R IL+GL IA +IDEII+ IR + K M S RF L+E Q AIL++RLR L Sbjct: 375 KDRAHILEGLRIALDHIDEIISTIRESETDKVAMESLQQRFKLSEKQAQAILDMRLRRLT 434 Query: 441 KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500 LE +I++E + LL +++++L + + E+ E+++ F RRT Sbjct: 435 GLERDKIEAEYNELLNYISELEAILADEEVLLQLVRDELTEIRDRFGDD-----RRT--- 486 Query: 501 EVSRADKATLQ-QAMIEKEPITVVISNRGWIRSLKSHSV--------DLSALHFKEGDSL 551 E+ L+ + +I +E I + +S+ +I+ L + + ++ E D + Sbjct: 487 EIQLGGFEDLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRAQNRGGRGVQGMNTLEEDFV 546 Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAFV-- 607 + T D +L + G+ Y L + LS + G + I+L +++ I T Sbjct: 547 SQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIELENDEIISTMIAVK 606 Query: 608 -YDSTCKLLVVSSKGNAFIVEESEIIAN----TRKGKTFLKVSSEEKMKLVVKVTGDHVA 662 +S LV ++K +V+ S ++N R GK + ++++ V +G Sbjct: 607 DLESEDNFLVFATKRG--VVKRS-ALSNFSRINRNGKIAISFREDDELIAVRLTSGQEDI 663 Query: 663 VVGENRKLLI 672 ++G + LI Sbjct: 664 LIGTSHASLI 673 >gi|1835202|emb|CAA70294.1| DNA gyrase subunit A [Rhodobacter sphaeroides] Length = 907 Score = 419 bits (1078), Expect = e-115, Method: Compositional matrix adjust. Identities = 255/671 (38%), Positives = 385/671 (57%), Gaps = 57/671 (8%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 VS+ ++ YL YA+S I RAIPDLRDG KPVHRRI++AM E G ++KSAR V Sbjct: 11 VSIAEEMKTAYLDYAMSVIVSRAIPDLRDGLKPVHRRILYAMHETGNTHDKPYRKSARPV 70 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+ +GK HPHGD ++YD+LVR+AQPF L+ GQGNFG++DGD+AAA RYTE RM + Sbjct: 71 GDTMGKYHPHGDGAIYDALVRMAQPFSMGLKLLDGQGNFGSMDGDNAAAMRYTEVRMDKP 130 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A +L +D+D VDF+D Y+ +D EP V P++FPN+L NG GIAVGMAT+IP HN+ E+ Sbjct: 131 AAFLLADIDKDTVDFQDNYDGKDREPTVLPARFPNMLVNGAGGIAVGMATNIPPHNLGEV 190 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 +A LA+I+NP+IS E+L+E I GPDFPTGG+I+ R ++Y GRG +RA+ VE Sbjct: 191 VDATLAMIENPDISTERLMEIIPGPDFPTGGVIL-GRSGARKAYLEGRGSVIMRAKARVE 249 Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE-DVRIVLFPKNR 318 E+ + + IV+ EIPYQV K+ +IEKIA+++ K+I + ++DES VR+V+ K R Sbjct: 250 EIRKDRYAIVLDEIPYQVNKATMIEKIADMVREKKIEGIAHVQDESDRVGVRVVIELK-R 308 Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378 P++++ ++ + M+T F NM L+ GR P+ + L L +L R +V+ RR+++ Sbjct: 309 DATPEVVLNQLWRFTPMQTTFGCNMLALNGGR-PEQLTLRDFLSHFLTFREDVVARRTAY 367 Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP----KPVMVSR-------------- 420 ++ R IL GL +A N+DE++A IR+ P + +M R Sbjct: 368 ELRKARERSHILCGLAVAVSNVDEVVATIRSLADPAQARERLMTRRLPSADIADYIRLID 427 Query: 421 -----------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGK 469 ++L+E Q AIL+LRL SL + ++ EL L A+ +L S + Sbjct: 428 DPSHTINEDGTYNLSEIQARAILDLRLSSLTAMGVKEVTDELAELAAKIRDYLDILGSRE 487 Query: 470 QQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW 529 + I+ E+REVK++F+ RRT E+S + +IE+E + V I++ G+ Sbjct: 488 RIMAIISDELREVKDLFAVP-----RRT---EISEWAGDLEDEDLIEREDMVVTITSGGY 539 Query: 530 I--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL- 580 I RS + L+++ KE D + A+T ++L +TDG Y L L Sbjct: 540 IKRTPLAEFRSQRRGGKGLASMATKEDDVVTTLFVANTHTQLLFFTTDGMVYDLKCWRLP 599 Query: 581 LSGR-GHGEAIQLLIDLNHNQDIVTAFVYDST------CKLLVVSSKGNAFIVEESEIIA 633 L GR G+AI ++ + I D +++ +S+G+ S+ Sbjct: 600 LGGRTAKGKAIVNILPIATGISIAALMKIDGPEEEWDRLQVVFATSEGDVRRNRLSDFTN 659 Query: 634 NTRKGKTFLKV 644 R GK +K+ Sbjct: 660 VKRNGKIAMKL 670 >gi|325288207|ref|YP_004264388.1| DNA gyrase subunit A [Syntrophobotulus glycolicus DSM 8271] gi|324963608|gb|ADY54387.1| DNA gyrase subunit A [Syntrophobotulus glycolicus DSM 8271] Length = 820 Score = 419 bits (1077), Expect = e-115, Method: Compositional matrix adjust. Identities = 253/705 (35%), Positives = 404/705 (57%), Gaps = 39/705 (5%) Query: 12 LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71 + E V + + L++ +LAY++S I RA+PD+RDG KPVHRRI++ M ++G+ + Sbjct: 3 IFEGKVLPIDISDELKKSFLAYSMSVIASRALPDVRDGLKPVHRRILYTMHDLGMVPSKS 62 Query: 72 FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131 + KSAR+VG+ +GK HPHGD S+YD++VR+AQ F RYPLI G GNFG++DGDSAAA RY Sbjct: 63 YSKSARLVGDCMGKFHPHGDSSIYDAVVRMAQEFSSRYPLIDGHGNFGSVDGDSAAAMRY 122 Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191 TE +M +A +L +D+D VDF Y+E++ EP V PSKFPNLL NG+SGIAVGMAT+I Sbjct: 123 TEVKMASLATYMLADIDKDTVDFGPNYDEKEKEPSVLPSKFPNLLVNGSSGIAVGMATNI 182 Query: 192 PSHNVQEICEAALALID---------NPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242 P HN+ E+ + LID + EI+ EKLL+ I GPDFPT G+++ + E I ++ Sbjct: 183 PPHNLGEVIDGVNYLIDQQGAEAPDSDQEIT-EKLLKLIKGPDFPTAGLLMGT-EGIQKA 240 Query: 243 YRLGRGGFRVRARWCVEEVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301 Y GRG ++RA+ +E++ + + I+VTEIP+ V KSRLIEKIAEL+ K+I + D+ Sbjct: 241 YTTGRGSVKIRAKAIIEKIEKNNKMQIIVTEIPFMVNKSRLIEKIAELVQEKKIDGITDL 300 Query: 302 RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361 RDES ++ R ++P +++ ++ + ME F +N+ L G P+ + L +L Sbjct: 301 RDESNRKGMRIVIELRRDVNPQIILNLLYKHTQMEESFGINLLALVDG-TPKTLTLKAML 359 Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMV 418 + ++AH++EV+ RR+ F ++ I++GL A IDE+I IIR N++ + ++ Sbjct: 360 EYFIAHQKEVIIRRTHFELKKAQDEAHIVEGLRKALDFIDEVIEIIRSSKNDETARERLM 419 Query: 419 SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE 478 +RF +E Q AIL++RLR L LE ++ ++ L E ++L S K I E Sbjct: 420 TRFEFSERQSQAILDMRLRRLTGLEREKLDAQFQKLSDEIAYHLAVLQSDKMVREIIKTE 479 Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI-------- 530 + E++ + D RR + ++ D + +I E + + ++++G+I Sbjct: 480 LGEIRVKY----DNPRRSIITIDTTKMD----IEDLIADEDVVITVTHKGYIKRLPLTTY 531 Query: 531 RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGE 588 RS + ++ + E D ++ A T IL ST GK Y L A + +GR G Sbjct: 532 RSQRRGGRGVTGMSTGESDFVEKLFIASTHHFILFFSTKGKVYRLRAHAIPDAGRTAKGT 591 Query: 589 AIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS 645 A+ L++L+ ++ I + LL V+ KG E + G L + Sbjct: 592 AMINLLNLSQDEKITATIAVKDFKDDSYLLTVTRKGIIKKTALEEYHTQRKDGLIALTLD 651 Query: 646 SEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVR 688 ++++ V + G D + + + K++ F + + M R +GVR Sbjct: 652 DDDELIAVRQTKGKDDILLATPSGKIIRFPENDVRPMGRTARGVR 696 >gi|262282818|ref|ZP_06060585.1| DNA gyrase subunit A [Streptococcus sp. 2_1_36FAA] gi|262261070|gb|EEY79769.1| DNA gyrase subunit A [Streptococcus sp. 2_1_36FAA] Length = 824 Score = 419 bits (1077), Expect = e-115, Method: Compositional matrix adjust. Identities = 263/715 (36%), Positives = 410/715 (57%), Gaps = 56/715 (7%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 ++N+ V+L ++ ++ YA+S I RA+PD+RDG KPVHRRI++ M+E+G+ K Sbjct: 10 DKNLVNVNLTSEMKTSFIDYAMSVIVSRALPDVRDGLKPVHRRILYGMNELGVTPDKPHK 69 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSARI G+V+GK HPHGD S+Y+++VR+AQ + RY L+ G GNFG++DGD AAA RYTE Sbjct: 70 KSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYTE 129 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 ARM+++A +L+ ++++ VDF D Y+ + EP+V P++FPNLL NG +GIAVGMAT+IP Sbjct: 130 ARMSKIALEMLRDINKNTVDFIDNYDANEREPIVLPARFPNLLVNGATGIAVGMATNIPP 189 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E +A ++DNPE + ++E + GPDFPTG +++ + I +Y G+G +R Sbjct: 190 HNLAESIDAVKLVMDNPEATTRDIMEVLPGPDFPTGALVM-GKSGIHRAYETGKGSIVLR 248 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312 +R +EE+ G IVVTE PY V K+++ E I L+ KRI + +RDES E VR V Sbjct: 249 SRTEIEEMKNGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVRFV 308 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 + + R +++ ++F L+ M+T F NM + G VP+++ L IL ++ H++EV+ Sbjct: 309 IEVR-RDASAHVILNNLFKLTQMQTNFSFNMLAIQ-GGVPKILSLREILLAYIEHQKEVV 366 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVD 429 RR++F + R IL GLLIA +IDE+I IIRN + + + ++++F L+E Q Sbjct: 367 TRRTAFDKDKAEARAHILAGLLIALDHIDEVIRIIRNSETDAEAQAELMAKFELSERQSQ 426 Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489 AIL++RLR L LE +I+SE D L+A + +L ++ I E+ EVK F+ Sbjct: 427 AILDMRLRRLTGLEHDKIQSEYDELIALIADLADILAKPERVLTIIREELDEVKRKFADE 486 Query: 490 TDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSL--------KSHSVDL 540 RRT E+ + +L+ + +IE+ + + +SN+G+I+ L K + Sbjct: 487 -----RRT---ELMVGEVLSLEDEDLIEEADVLITLSNKGYIKRLNQDEFTAQKRGGRGV 538 Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLLSGRG 585 K+ D +K + T DR+L + G+ Y LP NLL Sbjct: 539 QGTGVKDDDFVKELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYGRTAKGLPIVNLLK-LD 597 Query: 586 HGEAIQLLIDL--NHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK-GKTFL 642 GE IQ +I++ +H+QD F T +L VV A AN R+ G L Sbjct: 598 EGETIQTIINVEQDHSQDSYLFF----TTRLGVVKRTSVAD-------FANIRQNGLKAL 646 Query: 643 KVSSEEKMKLVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSR-GKGVRLQSYKDG 695 + E+++ V G ++G + F+ + MSR GVR + +DG Sbjct: 647 NLKDEDELINVFLTDGAADVIIGTKFGYSVRFNETAVRNMSRIATGVRGVNLRDG 701 >gi|209695246|ref|YP_002263175.1| DNA gyrase subunit A [Aliivibrio salmonicida LFI1238] gi|208009198|emb|CAQ79452.1| DNA gyrase subunit A [Aliivibrio salmonicida LFI1238] Length = 885 Score = 419 bits (1077), Expect = e-115, Method: Compositional matrix adjust. Identities = 245/607 (40%), Positives = 360/607 (59%), Gaps = 57/607 (9%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 + + V++ L YL YA+S I RA+PD+RDG KPVHRR++ AM +G D+ +KK Sbjct: 12 KGITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMDVLGNDWNKPYKK 71 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 SAR+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG+IDGDSAAA RYTE Sbjct: 72 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEV 131 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 RM+++A +L +D++ VD+ Y+ + P V P++ PNLL NG+SGIAVGMAT+IP H Sbjct: 132 RMSKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTRVPNLLVNGSSGIAVGMATNIPPH 191 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 N+ E+ LA I+N +I+I++L+ YI GPDFPT +I R+ IV++Y+ GRG +R+ Sbjct: 192 NLTEVVNGCLAFIENEDITIDELINYIPGPDFPTAALI-SGRKGIVDAYKTGRGKVYMRS 250 Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVL 313 + +E G I+VTEIPYQV K+R+IEKIAEL+ K++ + +RDES +D +RIV+ Sbjct: 251 KANIEADKNGKETIIVTEIPYQVNKARVIEKIAELVKDKKVEGISALRDESDKDGMRIVI 310 Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373 K R ++++ ++F L+ ++T F +NM L G+ P++ L +LK ++ HRREV+ Sbjct: 311 ECK-RDAVGEVVLNNLFSLTQLQTTFGVNMVALDNGQ-PKLFNLKEMLKCFVDHRREVVT 368 Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR---------- 420 RR+ F ++ R IL+GL +A NIDEII +I+N P K +V+R Sbjct: 369 RRTIFELRKARDRAHILEGLALALANIDEIIDLIKNAPSPAEAKQGLVARGWDLGNVADM 428 Query: 421 ------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLA 456 + LTE Q AIL LRL L LE +I E LL Sbjct: 429 LERAGTDAARPDWLEPEFGIREGQYFLTEQQAQAILELRLHRLTGLEHEKILDEYKALLD 488 Query: 457 EKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE 516 E ++ +L S ++ I E+ V++ + RRT E+ A + +I Sbjct: 489 EIAELMHILASTERLMEIIRDELITVRDTYGDE-----RRT---EIGAAIHDIDIEDLIT 540 Query: 517 KEPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568 +E + V +S G+++ + + SA K+ D ++ L A+T D IL ST Sbjct: 541 QEDVVVTLSREGYVKYQILGDYEAQRRGGKGKSATKMKDTDYIERLLVANTHDNILCFST 600 Query: 569 DGKAYTL 575 GKAY+L Sbjct: 601 RGKAYSL 607 >gi|193213726|ref|YP_001994925.1| DNA gyrase subunit A [Chloroherpeton thalassium ATCC 35110] gi|193087203|gb|ACF12478.1| DNA gyrase, A subunit [Chloroherpeton thalassium ATCC 35110] Length = 841 Score = 419 bits (1077), Expect = e-115, Method: Compositional matrix adjust. Identities = 245/671 (36%), Positives = 395/671 (58%), Gaps = 29/671 (4%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 E + +++ + + YL Y++S I RA+PD+RDG KPVHRR++ M+E+GL G ++KK Sbjct: 4 EKIIPINIEDEMRDSYLDYSMSVIVSRALPDVRDGLKPVHRRVLFGMNELGLQAGRSYKK 63 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 SAR+VGEV+GK HPHGD +VYDS+VR+ Q F RYPL+ GQGNFG++DGD+ AA RYTE Sbjct: 64 SARVVGEVLGKYHPHGDSAVYDSIVRMVQNFSLRYPLVDGQGNFGSVDGDAPAAMRYTEV 123 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 RM +++ IL+ +D++ +DF +++ EP+V P+ FPNLL NG SGIAVGMAT+IP H Sbjct: 124 RMMRISSEILRDLDKNTIDFAPNFDDSLEEPIVLPAAFPNLLINGASGIAVGMATNIPPH 183 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 N+ E+ + +A I+NPEI+IE+L+ YI PDFPT GII + ++Y GRG +RA Sbjct: 184 NLTEVIDGVIAYINNPEITIEELMTYIKAPDFPTAGIIY-GYNGVRDAYLTGRGKIVLRA 242 Query: 255 RWCVEEVGR-GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIV 312 + VE + G I++TE+PYQV K+RLIEKIA L+ K++ + D+RDES D +R+V Sbjct: 243 KVQVEVTPKNGRESIIITELPYQVNKARLIEKIAGLVQQKKVEGIADLRDESDRDGMRVV 302 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 + K ++ +++ +F L+ ++ F + M L +G +P+V+ L ++ ++ HR EV+ Sbjct: 303 IELKKDAV-TQVVINRLFKLTQLQETFGVIMLAL-VGGIPRVLTLKETIQYYVNHRHEVI 360 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVD 429 RR+ F + +RR IL+GL I N+DEIIA IR + + + +++ FSL++ Q Sbjct: 361 LRRTRFELDEAERRAHILEGLKICLDNLDEIIATIRQSPDTETARERLMATFSLSDLQAK 420 Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489 AIL++RL+ L LE +I+ E LL E + ++L + K Q I E+ ++K+ + Sbjct: 421 AILDMRLQRLTGLERQKIEDEYLELLKTIEGLRAILANEKLQMQLIKKELLQIKKTYGDE 480 Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSVDLS 541 RRT V + +++ MI +E + + I+++G+I+ +S Sbjct: 481 -----RRTQI--VYETEDFSVED-MIAEEDVVITITHQGYIKRFPVSGYRRQGRGGRGIS 532 Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEAIQLLIDLNHN 599 + +E D ++ A T IL ++ GK Y L + +GR G +I LI+ Sbjct: 533 GVSAREDDFIEHMFIASTHHYILFFTSHGKCYWLKVHEIPEAGRTARGRSITNLIEFATG 592 Query: 600 QDI---VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV 656 + I + ++ T +++ + G SE R G + ++ +++ Sbjct: 593 EKIKASINVKEFNDTQFIVMATKNGTIKKTPLSEYSNPRRSGIIAINITDNDELVGASLT 652 Query: 657 TGDHVAVVGEN 667 G H V+ +N Sbjct: 653 DGSHQIVLAKN 663 >gi|218294962|ref|ZP_03495816.1| DNA gyrase, A subunit [Thermus aquaticus Y51MC23] gi|218244870|gb|EED11394.1| DNA gyrase, A subunit [Thermus aquaticus Y51MC23] Length = 805 Score = 419 bits (1077), Expect = e-115, Method: Compositional matrix adjust. Identities = 237/593 (39%), Positives = 368/593 (62%), Gaps = 27/593 (4%) Query: 26 LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85 L++ ++ YA+S I +RA+PD+RDG KPV RRI+ A + G+ G KSA+IVGEV+GK Sbjct: 13 LKQSFINYAMSVIVDRALPDVRDGLKPVQRRILFAAYQEGVLPGRKHVKSAKIVGEVMGK 72 Query: 86 LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145 HPHGD ++YD+L RLAQP+ RYPL+ GQGNFG+IDGD AA RYTEAR++ + +LQ Sbjct: 73 YHPHGDAAIYDALARLAQPWNLRYPLVDGQGNFGSIDGDPPAAQRYTEARLSPIGAEMLQ 132 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 +D++ VDFR Y+ EP V P+ PNLL NG SGIAVGMATS+P HN+ E+ +A +A Sbjct: 133 DMDKETVDFRPNYDGSLKEPEVLPAAIPNLLVNGASGIAVGMATSLPPHNLSEVVDALVA 192 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265 +IDNP I++E+++ ++ GPDFPTGG + SR+ I E+Y GRG +VRA+ VEE G Sbjct: 193 MIDNPGITLEEVMAHLPGPDFPTGGRL--SRKGIKEAYATGRGSLKVRAKVRVEEKG-SR 249 Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFPKNRSLDPDL 324 +VVTEIPYQV K+ LI +IA L+ AK+I + +RDES + +RI + K R +P + Sbjct: 250 PMLVVTEIPYQVNKAGLIAQIAALVKAKKIEDIVALRDESDRQGLRIAIELK-RGANPQV 308 Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384 ++ ++ + +++ F +N+ + G P+V+ L +++ +L HR+EV+ RRS F ++ + Sbjct: 309 VLNQLYKHTALQSSFTVNLLAIVEGE-PRVLSLLDLMRHYLDHRKEVVRRRSLFDLRKAE 367 Query: 385 RRVEILKGLLIAYLNIDEIIAIIR-NEDKP--KPVMVSRFSLTENQVDAILNLRLRSLRK 441 R IL+GLLIA +IDE+IA+IR +ED P + ++ RF L+E Q AIL++RL+ L Sbjct: 368 ERAHILEGLLIALDHIDEVIALIRASEDAPAARRGLMERFGLSEAQAQAILDMRLQRLVA 427 Query: 442 LEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCE 501 LE ++ E L+ E ++ ++L + W ++ E+ VKE + + RRT E Sbjct: 428 LEREKLLEEYRGLMEEIARLKAILEDEGRLWGEVKRELLRVKEKYGDA-----RRTLLTE 482 Query: 502 VSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DLSALHFKEGDSLKI 553 +++ + +IE EP+ + ++ +G+++ L + L A KE D Sbjct: 483 F---EESFNPEDLIEDEPMVITLTAQGFLKRLPLEAYRAQGRGGKGLMAGKTKEEDEATH 539 Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVT 604 A D +L+ S G+ Y L +L + + G ++ L+ L +++ Sbjct: 540 VFVADAHDDLLVFSNRGRVYRLKVYDLPEMGRQARGVHVKTLLPLAEEEEVAA 592 >gi|291618165|ref|YP_003520907.1| GyrA [Pantoea ananatis LMG 20103] gi|291153195|gb|ADD77779.1| GyrA [Pantoea ananatis LMG 20103] gi|327394560|dbj|BAK11982.1| DNA gyrase subunit A GyrA [Pantoea ananatis AJ13355] Length = 880 Score = 419 bits (1077), Expect = e-115, Method: Compositional matrix adjust. Identities = 254/637 (39%), Positives = 373/637 (58%), Gaps = 60/637 (9%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + V++ L+ YL YA+S I RA+PD+RDG KPVHRR+++AMSE+G D+ +KKSA Sbjct: 8 ITPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSELGNDWNKPYKKSA 67 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG+IDGDSAAA RYTE RM Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVRM 127 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 +++A +L ++++ VDF Y+ + P V P+K PNLL NG SGIAVGMAT+IP HN+ Sbjct: 128 SKIAHDLLADLEKETVDFVPNYDGTEQIPDVLPTKIPNLLVNGASGIAVGMATNIPPHNL 187 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 +E+ LA I++ ISIE L+E+I GPDFPT II R I E+YR GRG +RAR Sbjct: 188 REVINGCLAYIEDENISIEGLMEHIPGPDFPTAAII-NGRRGIEEAYRTGRGKVYIRARG 246 Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314 VE + G I++ E+PYQV K+RLIEKIAEL+ KR+ + +RDES +D +RIV+ Sbjct: 247 EVEVDAKTGRETIIIHELPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K ++ ++++ +++ L+ ++T F +NM L G+ P++M L IL+ ++ HRREV+ R Sbjct: 307 IKRDAVG-EVVLNNLYSLTQLQTSFGINMVALHQGQ-PKIMALKEILEAFVRHRREVVTR 364 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-------------------------- 408 R+ F ++ R IL+GL IA NID II +IR Sbjct: 365 RTIFELRKARDRAHILEGLAIALANIDPIIELIRRAPTPAEAKAGLIAQSWDLGNVSAML 424 Query: 409 ---NEDKPKP--------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457 +D +P + ++ LTE Q AIL+LRL+ L LE ++ E LL + Sbjct: 425 ERAGDDAARPEWLEAQFGIREGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKQLLDQ 484 Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517 ++ +L S ++ I E+ +++ F G R T + AD + +I + Sbjct: 485 IAELLHILGSSERLMEVIREELELMRDQF------GDERRTEITANSADINI--EDLINQ 536 Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569 E + V +S++G+++ + + SA KE D + L A+T D IL S+ Sbjct: 537 EDVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSR 596 Query: 570 GKAYTLPAGNLL-SGRG-HGEAIQLLIDLNHNQDIVT 604 G+ Y + L + RG G I L+ L N+ I Sbjct: 597 GRLYWMKVYQLPEASRGARGRPIVNLLPLEANERITA 633 >gi|85059560|ref|YP_455262.1| DNA gyrase subunit A [Sodalis glossinidius str. 'morsitans'] gi|84780080|dbj|BAE74857.1| DNA gyrase subunit A [Sodalis glossinidius str. 'morsitans'] Length = 886 Score = 419 bits (1077), Expect = e-115, Method: Compositional matrix adjust. Identities = 254/635 (40%), Positives = 371/635 (58%), Gaps = 60/635 (9%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + V++ L+ YL YA+S I RA+PD+RDG KPVHRR++ AMS +G D+ +KKSA Sbjct: 8 ITPVNIEEELKRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSVLGNDWNKPYKKSA 67 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG++DGDSAAA RYTE RM Sbjct: 68 RVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEVRM 127 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 ++A +L ++++ VD+ Y+ + P V P++ PNLL NG+SGIAVGMAT+IP HN+ Sbjct: 128 AKIAHELLADLEKETVDYVPNYDGTEQIPDVMPTRIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 EI + LA ID+ IS+E L+E+I GPDFPT II R I E+YR GRG +RAR Sbjct: 188 AEIIDGCLAYIDDENISVEGLMEHIPGPDFPTAAII-NGRRGIEEAYRTGRGKIYIRARA 246 Query: 257 CVEEVGR-GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314 VE G+ G I+V EIPYQV K+RLIEKIAEL+ KR+ + +RDES +D +RIV+ Sbjct: 247 EVETDGKSGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISGLRDESDKDGMRIVIE 306 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K ++ ++++ +++ L+ ++ F +NM L G+ P+++PL IL ++ HRREV+ R Sbjct: 307 IKRDAVG-EVVLNNLYSLTQLQVSFGINMVALHQGQ-PKILPLKDILSAFVRHRREVVTR 364 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----------- 420 R+ F ++ R IL+ L +A NID II +IR E P K +V+R Sbjct: 365 RTIFELRKARERAHILEALAVALANIDPIIELIRQEPTPAEAKAALVARSWALGTVSAML 424 Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457 + LTE Q AIL+LRL+ L LE ++ E LL + Sbjct: 425 DRAGDDAARPEWLEPEYGIRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLTQ 484 Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517 ++ +L + I E+ +KE ++ RRT E++ + +I + Sbjct: 485 IAELIRILQNPDCLMEVIREELVAIKEQYNDP-----RRT---EITANTSDINIEDLINQ 536 Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569 E + V +S++G+++ + + SA KE D + L A+T D ILL S+ Sbjct: 537 EDVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAASIKEEDFIDRLLVANTHDTILLFSSR 596 Query: 570 GKAYTLPAGNLL-SGRG-HGEAIQLLIDLNHNQDI 602 G+ Y + L + RG G I L+ L N+ I Sbjct: 597 GRMYWMKVYQLPEASRGARGRPIVNLLPLESNERI 631 >gi|242238485|ref|YP_002986666.1| DNA gyrase subunit A [Dickeya dadantii Ech703] gi|242130542|gb|ACS84844.1| DNA gyrase, A subunit [Dickeya dadantii Ech703] Length = 878 Score = 419 bits (1077), Expect = e-115, Method: Compositional matrix adjust. Identities = 259/659 (39%), Positives = 380/659 (57%), Gaps = 65/659 (9%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + V++ L+ YL YA+S I RA+PD+RDG KPVHRR+++AMS +G D+ +KKSA Sbjct: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSVLGNDWNKPYKKSA 67 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG+IDGDSAAA RYTE RM Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVRM 127 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 ++A +L +D++ VDF Y+ + P V P++ PNLL NG+SGIAVGMAT+IP HN+ Sbjct: 128 ARIAHELLSDLDKETVDFVPNYDGTEQIPDVMPTRIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ + LA ID+ IS+E L+ YI GPDFPT II + I E+YR GRG +RAR Sbjct: 188 SEVIDGCLAYIDDENISVEGLMTYIPGPDFPTAAII-NGKRGIEEAYRTGRGKVYIRARA 246 Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314 VE + G I+V EIPYQV K+RLIEKIAEL+ KRI + +RDES +D +RIV+ Sbjct: 247 EVEADEKSGRETIIVHEIPYQVNKARLIEKIAELVKDKRIEGISALRDESDKDGMRIVIE 306 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K ++ ++++ ++ + M+ F +NM L G+ P++M L IL ++ HRREV+ R Sbjct: 307 IKRDAVG-EVVLNHLYSQTQMQVSFGINMVALHQGQ-PKLMTLKEILAAFVRHRREVVTR 364 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVS------------ 419 R+ F ++ R IL+GL +A +NID II +IR+ P K +V+ Sbjct: 365 RTIFELRKARERAHILEGLAVALVNIDPIIELIRHASTPADAKAALVAQAWELGSVAAML 424 Query: 420 ----------------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457 ++ LTE Q AIL+LRL+ L LE ++ E LL + Sbjct: 425 ERAGDDAARPEWLEPEFGIRDGKYHLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLTQ 484 Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517 + +L S ++ I E+ +KE ++ +RRT E++ + +I + Sbjct: 485 IAALLFILRSPERLMEVIREELEAIKEQYND-----QRRT---EITHNSADINIEDLISQ 536 Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569 E + V +S++G+++ + + SA KE D + L A+T D IL S+ Sbjct: 537 EDVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDQLLVANTHDTILCFSSR 596 Query: 570 GKAYTLPAGNLL-SGRG-HGEAIQLLIDLNHNQDIVTAFV----YDSTCKLLVVSSKGN 622 G+ Y L L + RG G I L+ L N+ I TA + Y+ + + ++ G Sbjct: 597 GRLYWLKVYQLPEASRGARGRPIINLLPLEQNERI-TAILPVREYEEGLNVFMATASGT 654 >gi|260598668|ref|YP_003211239.1| DNA gyrase subunit A [Cronobacter turicensis z3032] gi|260217845|emb|CBA32359.1| DNA gyrase subunit A [Cronobacter turicensis z3032] Length = 878 Score = 419 bits (1077), Expect = e-115, Method: Compositional matrix adjust. Identities = 275/734 (37%), Positives = 414/734 (56%), Gaps = 76/734 (10%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + V++ L+ YL YA+S I RA+PD+RDG KPVHRR+++AM+ +G D+ A+KKSA Sbjct: 8 ITPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG+IDGDSAAA RYTE R+ Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYTLVDGQGNFGSIDGDSAAAMRYTEIRL 127 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 ++A ++ +D++ VDF D Y+ + P V P+K PNLL NG+SGIAVGMAT+IP HN+ Sbjct: 128 AKIAHELMADLDKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ LA ID+ +ISIE L+E+I GPDFPT II R I E+YR GRG +RAR Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTSAII-NGRRGIEEAYRTGRGKIYIRARA 246 Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314 VE + G I+V EIPYQV K+RLIEKIAEL+ KR+ + +RDES +D +RIV+ Sbjct: 247 EVEVDPKNGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKDGMRIVIE 306 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K ++ ++++ +++ + ++ F +NM L G+ P++M L IL ++ HRREV+ R Sbjct: 307 IKRDAVG-EVVLNNLYSQTQLQVSFGINMVALHHGQ-PKIMALKEILAAFVRHRREVVTR 364 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-------------------------- 408 R+ F ++ R IL+GL IA NID II +IR Sbjct: 365 RTIFELRKARERAHILEGLAIALANIDPIIELIRRAPNPSEAKAGLIAQAWELGTVSAML 424 Query: 409 ---NEDKPKP--------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457 +D +P + ++ LTE Q AIL+LRL+ L LE ++ E LL + Sbjct: 425 ERAGDDAARPEWLEPEFGIRDGKYWLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQ 484 Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517 ++ +L S + I E+ +++ F G R T + AD + +I + Sbjct: 485 IAELLHILGSADRLMEVIREELELIRDQF------GDERRTEITANSADINI--EDLINQ 536 Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569 E + V +S++G+++ + + SA KE D + L A+T D IL S+ Sbjct: 537 EDVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSR 596 Query: 570 GKAYTLPAGNLL-SGRG-HGEAIQLLIDLNHNQDIVTAFV----YDSTCKLLVVSSKGNA 623 G+ Y + L + RG G I L+ L N+ I TA + Y+ + + ++ G Sbjct: 597 GRLYWMKVYQLPEASRGARGRPIVNLLPLEANERI-TAILPVREYEEGVNVFMATASGT- 654 Query: 624 FIVEESEIIANTR-KGKTFLKVSSEEKMKLV-VKVTG--DHVAVVGENRKLLIFSIDQIP 679 V+++ + +R + + V+ E +L+ V +T D V + K++ F D + Sbjct: 655 --VKKTALTEFSRPRTAGIIAVNLNEGDELIGVDLTAGKDEVMLFSAQGKVVRFKEDAVR 712 Query: 680 EMSRG----KGVRL 689 M R +G+RL Sbjct: 713 PMGRTATGVRGIRL 726 >gi|149193745|ref|ZP_01870843.1| DNA gyrase subunit A [Caminibacter mediatlanticus TB-2] gi|149135698|gb|EDM24176.1| DNA gyrase subunit A [Caminibacter mediatlanticus TB-2] Length = 812 Score = 419 bits (1077), Expect = e-115, Method: Compositional matrix adjust. Identities = 270/756 (35%), Positives = 432/756 (57%), Gaps = 39/756 (5%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 V + L + YL Y++S I RA+PD+RDG KPVHRRI++AM +MG+ + +KKSARIV Sbjct: 6 VKIEDTLAKSYLEYSMSVIVGRALPDVRDGLKPVHRRILYAMYKMGITSSSPYKKSARIV 65 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGD +VY++LVR+AQ F R PLI GQGNFG+IDGD+AAA RYTEAR+T++ Sbjct: 66 GDVIGKYHPHGDTAVYEALVRMAQNFSMREPLIDGQGNFGSIDGDNAAAMRYTEARLTKI 125 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 AE +L+ +D+D VDF Y+ + EPVV P++FPNLL NG+SGIAVGMAT+IP HN+ E+ Sbjct: 126 AEELLKDIDKDTVDFIPNYDGTEKEPVVLPARFPNLLVNGSSGIAVGMATNIPPHNLGEL 185 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 +A + +IDN E ++E +L++I GPDFPTGGII + E+Y+ GRG ++RA+ +E Sbjct: 186 IDALVYMIDNKETNLEDILQFIKGPDFPTGGIIFGRGGIL-EAYKSGRGSIKIRAKHHIE 244 Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFPKNR 318 G IV+ E+PYQV K++LIEKI+EL+ K I + +IRDES E +R+V+ K Sbjct: 245 HRG-NREIIVIDELPYQVNKAKLIEKISELVKDKIIDGISEIRDESDREGIRVVIELKKD 303 Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378 ++ ++++ +++ + M+ F +NM + + + P++ L IL ++ R+ V+ RR+ + Sbjct: 304 AM-SEIILNNLYKHTQMQVSFGINMLAI-LDKEPKLFNLMEILNTFIKFRKTVVIRRTIY 361 Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVDAILNLR 435 ++ +R IL+GLLIA NIDE++ II+N K ++ RF L+E Q AIL+++ Sbjct: 362 ELEEAKKRAHILEGLLIALANIDEVVTIIKNSQSSKEAKTNLIERFDLSEVQAQAILDMK 421 Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495 L L LE +++ E D L + + S+L N I E E+++ ++ R Sbjct: 422 LSRLTSLETNKLQKEYDELQEKIAYLTSILKEESVLNNVIKEEFLEIRKKYA-----NER 476 Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSVD------LSALHFKE 547 +T E+ + +I E + V I++RG+++ LK++ AL E Sbjct: 477 KT---EIVDDYDDIDIEDLIPNEDMVVTITHRGYVKRVPLKTYERQNRGGKGKKALTTYE 533 Query: 548 GDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDLNHN--- 599 D ++ A D +++++ G K Y +P G+ S G+AI LI+L+ + Sbjct: 534 NDFIEDFYIAKAHDTLMIITNKGQLHWLKVYKIPEGSRTS---KGKAIVNLINLDKDEKI 590 Query: 600 QDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--KLVVKVT 657 Q I+ +D L + G SE G + + ++++ +VK Sbjct: 591 QTIIKTSDFDENKSLAFFTKNGIVKRTNLSEFKNIRSTGVRAIVIDKDDELVTAKIVKED 650 Query: 658 GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAG 716 ++ +V + + F +D + EM R +GV+ ++K G V + + I S Sbjct: 651 DKYLFIVTKKGMAIRFPVDAVREMGRNARGVKGITFKIEGDEVVGALSLRDEKQEILSVS 710 Query: 717 -RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751 + + + L RGG G + K ++G + Sbjct: 711 EKGFGKRTEAEAYRLTNRGGKGVIAMKLTNKTGDLV 746 >gi|117617684|ref|YP_856853.1| DNA gyrase, A subunit [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117559091|gb|ABK36039.1| DNA gyrase, A subunit [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 915 Score = 419 bits (1077), Expect = e-115, Method: Compositional matrix adjust. Identities = 261/658 (39%), Positives = 378/658 (57%), Gaps = 63/658 (9%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + V++ L+ YL YA+S I RA+PD+RDG KPVHRR+++AM+E+G D+ +KKSA Sbjct: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNELGNDWNKPYKKSA 67 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD +VYD++VR+AQ F RY L+ GQGNFG++DGDSAAA RYTE RM Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQDFSMRYMLVDGQGNFGSVDGDSAAAMRYTEVRM 127 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 +++ +L +D++ VD+ Y+ + P V P+K PNLL NG+SGIAVGMAT+IP HN+ Sbjct: 128 ARISHELLADLDKETVDWVPNYDGTEMIPAVMPTKVPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 EI LALI+N +++I++L+ YI GPDFPTGGII R IV++YR GRG VRA+ Sbjct: 188 TEIVNGCLALIENGDLTIDELMTYITGPDFPTGGII-NGRSGIVQAYRTGRGSVYVRAKA 246 Query: 257 CVEEVGRGSW-CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315 VE + S I+V EIPYQV K+RLIEKIAEL+ K+I + +RDES +D ++ Sbjct: 247 EVEVDEKTSRETIIVHEIPYQVNKARLIEKIAELVKEKKIEGISALRDESDKDGMRIVIE 306 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 R ++++ +++ + M+T F +NM L + P+VM L IL +L HRREV+ RR Sbjct: 307 IKRGESGEIVLNNLYKHTQMQTTFGINMVALDNNQ-PKVMNLKEILDAFLLHRREVVTRR 365 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR------------ 420 + F ++ R IL+GL +A NID +I +IR+ P K +V+R Sbjct: 366 TVFELRKARDRAHILEGLAVALANIDPVIELIRHSATPADAKAGLVARGWELGNVASMLE 425 Query: 421 ----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458 + LTE Q AIL+LRL L LE +I E +LL Sbjct: 426 KAGDDAARPEWLEPEFGIREGHYYLTEQQAQAILDLRLHKLTGLEHEKILEEYQSLLDLI 485 Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518 ++ +L S + I E+ V+E + RRT E+S + + +I E Sbjct: 486 AELLFILASPVRLMEVIRDELLAVREQYGDE-----RRT---EISMSSAEINIEDLITPE 537 Query: 519 PITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570 + V +S++G+++ + + SA KE D ++ L A+T D IL ST G Sbjct: 538 DVVVTLSHQGYVKYQPLSDYEAQRRGGRGKSATRIKEEDFVERLLVANTHDTILCFSTRG 597 Query: 571 KAYTLPAGNLL-SGRG-HGEAIQLLIDLNHNQDIVTAFV----YDSTCKLLVVSSKGN 622 K Y L L + RG G I L+ L+ + I TA + YD+ + ++ G Sbjct: 598 KVYWLKVYQLPEASRGARGRPIINLLPLDEGERI-TAILPVKEYDADKYVFFATANGT 654 >gi|283832330|ref|ZP_06352071.1| DNA gyrase, A subunit [Citrobacter youngae ATCC 29220] gi|291071977|gb|EFE10086.1| DNA gyrase, A subunit [Citrobacter youngae ATCC 29220] Length = 878 Score = 419 bits (1077), Expect = e-114, Method: Compositional matrix adjust. Identities = 272/727 (37%), Positives = 406/727 (55%), Gaps = 67/727 (9%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + V++ L+ YL YA+S I RA+PD+RDG KPVHRR+++AM+ +G D+ A+KKSA Sbjct: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG++DGDSAAA RYTE RM Sbjct: 68 RVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRM 127 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 +++A ++ ++++ VDF D Y+ + P V P+K PNLL NG+SGIAVGMAT+IP HN+ Sbjct: 128 SKIAHELMADLEKETVDFVDNYDGTEQIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ LA ID+ +ISIE L+E+I GPDFPT II R I E+YR GRG +RAR Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAII-NGRRGIEEAYRTGRGKVYIRARA 246 Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314 VE + G I+V EIPYQV K+RLIEKIAEL+ KR+ + +RDES +D +RIV+ Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKDGMRIVIE 306 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K ++ ++++ +++ + ++ F +NM L G+ P++M L I+ ++ HRREV+ R Sbjct: 307 VKRDAVG-EVVLNNLYSQTQLQVSFGINMVALHHGQ-PKIMNLKDIIAAFVRHRREVVTR 364 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----------- 420 R+ F ++ R IL+ L IA NID II +IR P K +V+R Sbjct: 365 RTIFELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAALVARSWNLGNVSAML 424 Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457 + LTE Q AIL+LRL+ L LE ++ E LL + Sbjct: 425 ERAGDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQ 484 Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517 ++ +L S + I E+ ++E F G R T + AD + +I + Sbjct: 485 IAELLHILGSADRLMEVIREEMELIREQF------GDERRTEITANSADINI--EDLISQ 536 Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569 E + V +S++G+++ + + SA KE D + L A+T D IL S+ Sbjct: 537 EDVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSR 596 Query: 570 GKAYTLPAGNLL-SGRG-HGEAIQLLIDLNHNQDIVTAFV----YDSTCKLLVVSSKGNA 623 G+ Y + L + RG G I L+ L N+ I TA + Y+ + + ++ G Sbjct: 597 GRLYWMKVYQLPEASRGARGRPIVNLLPLEANERI-TAILPVREYEEGVNVFMATASGTV 655 Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMS 682 +E G + ++ +++ V +G D V + K++ F D + M Sbjct: 656 KKTALTEFSRPRSAGIIAVNLNEGDELIGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAMG 715 Query: 683 R-GKGVR 688 R GVR Sbjct: 716 RTATGVR 722 >gi|73916170|gb|AAZ92953.1| DNA gyrase subunit A [Streptococcus pneumoniae] gi|73916206|gb|AAZ92971.1| DNA gyrase subunit A [Streptococcus pneumoniae] gi|301800141|emb|CBW32746.1| DNA gyrase subunit A [Streptococcus pneumoniae OXC141] Length = 822 Score = 419 bits (1077), Expect = e-114, Method: Compositional matrix adjust. Identities = 257/706 (36%), Positives = 414/706 (58%), Gaps = 38/706 (5%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 ++N+ V+L ++ ++ YA+S I RA+PD+RDG KPVHRRI++ M+E+G+ K Sbjct: 3 DKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHK 62 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSARI G+V+GK HPHGD S+Y+++VR+AQ + RY L+ G GNFG++DGDSAAA RYTE Sbjct: 63 KSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYTE 122 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 ARM+++A +L+ ++++ VDF D Y+ + EP+V P++FPNLL NG +GIAVGMAT+IP Sbjct: 123 ARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIPP 182 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E +A ++DNPE++ + L+E + GPDFPTG +++ + I ++Y G+G +R Sbjct: 183 HNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVM-GKSGIHKAYETGKGSIVLR 241 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312 +R +E G IVVTE PY V K+++ E I L+ KRI + +RDES E VR V Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 + K R ++++ ++F ++ M+T F NM + G +P+++ L IL ++ H++EV+ Sbjct: 302 IEVK-RDASANVILNNLFKMTQMQTNFGFNMLAIQNG-IPKILSLRQILDAYIEHQKEVV 359 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVD 429 RR+ F + + R IL+GLLIA +IDE+I IIR + + + ++S+F L+E Q Sbjct: 360 VRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSKFKLSERQTQ 419 Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489 AIL++RLR L LE +I+SE D+LLA + +L ++ I E+ EVK FS Sbjct: 420 AILDMRLRRLTGLERDKIQSEYDDLLALIADLADILAKPERVSQIIKDELDEVKRKFSD- 478 Query: 490 TDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSL--------KSHSVDL 540 +RRT E+ +L+ + +IE+ + + +SNRG+I+ L K + Sbjct: 479 ----KRRT---ELMVGQVLSLEDEDLIEESDVLITLSNRGYIKRLDQDEFTAQKRGGRGV 531 Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS-GR-GHGEAIQLLIDLNH 598 K+ D ++ + T D +L + G+ Y L + GR G + L+ L+ Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDE 591 Query: 599 NQDIVTAFVYDS----TCKLLVVSSKGNAFIVEESEI--IANTRK-GKTFLKVSSEEKMK 651 ++ I T +S L + G IV+ + + AN R+ G L + E+++ Sbjct: 592 DESIQTVINVESDRSDDAYLFFTTRHG---IVKRTSVKEFANIRQNGLKALNLKDEDELI 648 Query: 652 LVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSR-GKGVRLQSYKDG 695 V+ GD ++G + F+ + MSR GV+ + ++G Sbjct: 649 NVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMSRIATGVKGVNLREG 694 >gi|14021652|dbj|BAB48264.1| DNA gyrase subunit A [Mesorhizobium loti MAFF303099] Length = 906 Score = 419 bits (1077), Expect = e-114, Method: Compositional matrix adjust. Identities = 255/703 (36%), Positives = 391/703 (55%), Gaps = 63/703 (8%) Query: 26 LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85 ++ YL+YA+S I RA+PD+RDG KPVHRRI++A E G + + KSAR V +V+GK Sbjct: 1 MQSSYLSYAMSVIVSRALPDVRDGLKPVHRRILYAAHESGYHWNRKYVKSARPVADVMGK 60 Query: 86 LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145 HPHGD S+YD+LVR+AQ + R PLI GQGNFG+IDGD AA RYTE+R+T+VA +L+ Sbjct: 61 YHPHGDASIYDALVRMAQDWSLRVPLIDGQGNFGSIDGDPPAAMRYTESRLTKVAHELLE 120 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 +D+D VDF++TY+ D+EP V P++FPNLL NG+ GIAVGMAT+IP HN+ E+C A+A Sbjct: 121 DIDKDTVDFQETYDASDTEPKVLPARFPNLLVNGSGGIAVGMATNIPPHNLGEVCNGAIA 180 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265 +IDNP I + L+E I GPDFPTGGI++ R I +Y GRG +R + +E+ G Sbjct: 181 IIDNPAIDLPALMEIIPGPDFPTGGIVL-GRSGIYSAYSTGRGSIVMRGKVNIEQRGNDR 239 Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325 I++TE+PYQV K+ +IEK+AEL+ KRI + DIRDES V+ R D++ Sbjct: 240 ESIIITEVPYQVNKASMIEKMAELVRDKRIEGISDIRDESDRQGYRVVIELKRDAVADVI 299 Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385 + ++ + ++T F NM L+ G+ P+++ L +LK +++ R EV+ RR+ F ++ Sbjct: 300 LNQLYRFTPLQTSFGANMVALNGGK-PELLTLTDMLKAFVSFREEVITRRTKFLLRKARD 358 Query: 386 RVEILKGLLIAYLNIDEIIAIIRNEDKPKP----VMVSR--------------------- 420 R +L GL IA NIDE+I +IR P+ +M R Sbjct: 359 RAHVLVGLAIAVANIDEVIKLIRTAPDPQTAREQLMERRWPAGDVESLILLIDDPRHRIN 418 Query: 421 ----FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476 ++L+E Q AIL LRL+ L L +I EL+++ AE +L+S + + Sbjct: 419 ADGTYNLSEEQARAILELRLQRLTALGRDEIADELNSIGAEIVDYLDILSSRARVQQIVK 478 Query: 477 CEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI------ 530 E+ V++ F RRT E++ + +I++E + V +S+ G+I Sbjct: 479 DELAAVRDEFGTP-----RRT---ELTDGGADMEDEDLIQREDMVVTVSHSGYIKRVPLS 530 Query: 531 --RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSG 583 R+ + S + KE D + A+T +L S+ G K + LP GN S Sbjct: 531 LYRAQRRGGKGRSGMSTKEEDFVTRLFVANTHTPVLFFSSRGIVYKEKVWRLPIGNPQS- 589 Query: 584 RGHGEAIQLLIDLNHNQDIVT--AFVYDSTC----KLLVVSSKGNAFIVEESEIIANTRK 637 G+A+ ++ L + I T D T ++ +++G + S+ + R Sbjct: 590 --RGKALINMLPLEQGERITTIMPLPEDETSWGELDVMFATTRGTVRRNKLSDFVQVNRN 647 Query: 638 GKTFLKVSSEEKMKLVVKVTGDH--VAVVGENRKLLIFSIDQI 678 GK +K+ E L V+ D+ V + + + + FS+ + Sbjct: 648 GKIAMKLEEEGDEILGVETCTDNDDVLLTASSGQCIRFSVGDV 690 >gi|21242381|ref|NP_641963.1| DNA gyrase subunit A [Xanthomonas axonopodis pv. citri str. 306] gi|21107819|gb|AAM36499.1| DNA gyrase subunit A [Xanthomonas axonopodis pv. citri str. 306] Length = 899 Score = 419 bits (1077), Expect = e-114, Method: Compositional matrix adjust. Identities = 265/725 (36%), Positives = 385/725 (53%), Gaps = 65/725 (8%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 V+L + + YL YA+S I RA+PD RDG KPVHRR+++AM E+G A+ KSARIV Sbjct: 11 VNLEDEMRKSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMHELGAHSNKAYFKSARIV 70 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGDQSVYD+LVR+AQPF RY ++ GQGNFG++DGDSAAA RYTE+RM+++ Sbjct: 71 GDVIGKYHPHGDQSVYDTLVRMAQPFSLRYMMVDGQGNFGSVDGDSAAAMRYTESRMSRL 130 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A ++ +D++ VDF+ Y+E++ EP V P++FP+LL NG++GIAVGMAT+IP HN+ E Sbjct: 131 AHELMADIDKETVDFQPNYDEKEQEPTVMPTRFPSLLVNGSAGIAVGMATNIPPHNLTEA 190 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 A +ALID PE+ +E L+EYI GPDFPT GII I YR GRG R+RA+ VE Sbjct: 191 INACIALIDTPELDVEGLMEYIPGPDFPTAGII-NGTAGIAAGYRTGRGRVRIRAKADVE 249 Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319 G IVVTEIPYQV K+RLIEKIAEL+ K++ + ++RDES +D + R Sbjct: 250 VADNGREAIVVTEIPYQVNKARLIEKIAELVKEKKLEGISELRDESDKDGMRIYIEVKRG 309 Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379 ++++ +++ + ME F +NM L GR PQ+M L +L+ ++ HRREV+ RR+ F Sbjct: 310 ESAEVVLNNLYQQTQMEAVFGINMVALIDGR-PQLMNLKQMLEAFIRHRREVVTRRTIFE 368 Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSR---------------- 420 ++ R +L+GL +A NIDE+I +I+ P+ M+++ Sbjct: 369 LRKARARAHVLEGLTVALANIDEMIELIKTSANPQEARERMLAKTWQPGLVGALLGAAGA 428 Query: 421 ------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKID 462 + L+E Q IL +RL L LE+ ++ E LL E + Sbjct: 429 EASKPEDLPPGVGLIQGFYQLSEVQAAQILEMRLHRLTGLEQEKLTDEYKQLLGVIEGLI 488 Query: 463 SLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITV 522 +L + I E+ V+E + G R T S D L +I E + V Sbjct: 489 RILENPDVLLQVIRDELINVREEY------GDERRTEIRHSEEDLDILD--LIAPEDVVV 540 Query: 523 VISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT 574 +S+ G+ + + + SA KE D + +T D +L ++ GK + Sbjct: 541 TLSHAGYAKRQPVSAYRAQRRGGRGRSAAATKEEDFIDQLWLVNTHDTLLTFTSSGKVFW 600 Query: 575 LPAGNL--LSGRGHGEAIQLLIDLNHN---QDIVTAFVYDSTCKLLVVSSKGNAFIVEES 629 LP L G I I L Q ++ Y + + G S Sbjct: 601 LPVHQLPEAGSNARGRPIINWIPLESGERVQAVLPVREYADNRYVFFATRNGTVKKTPLS 660 Query: 630 EIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSRG---- 684 E +GK + + + + V GD V + N K + F + M R Sbjct: 661 EFAFRLARGKIAINLDEGDALVGVALTDGDRDVLLFASNGKTVRFGESTVRSMGRTATGV 720 Query: 685 KGVRL 689 +G+RL Sbjct: 721 RGIRL 725 >gi|118589189|ref|ZP_01546596.1| DNA gyrase subunit A [Stappia aggregata IAM 12614] gi|118438518|gb|EAV45152.1| DNA gyrase subunit A [Stappia aggregata IAM 12614] Length = 938 Score = 419 bits (1076), Expect = e-114, Method: Compositional matrix adjust. Identities = 246/643 (38%), Positives = 375/643 (58%), Gaps = 56/643 (8%) Query: 4 DNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63 DN + ++ L ++K VS+ ++ YL YA+S I RA+PD+RDG KPVHRRI+++M E Sbjct: 8 DNSTPTDGL-PSDIKPVSIVDEMKRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYSMHE 66 Query: 64 MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123 G ++ ++KSAR+VG+V+GK HPHGD ++YD+LVR+AQ F R PLI GQGNFG++DG Sbjct: 67 NGYEWNKPYRKSARVVGDVMGKYHPHGDSAIYDALVRMAQNFSLRLPLIDGQGNFGSVDG 126 Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183 D AAA RYTE R+ +VA +L +D++ VDF++ Y+ +SEPVV P+KFPNLL NG GI Sbjct: 127 DPAAAMRYTECRLEKVAHKLLDDIDKETVDFQENYDNSESEPVVLPAKFPNLLVNGAGGI 186 Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243 AVGMAT+IP HN+ E+ +AA+A+++NP +S+E+L++ + GPDFPTGG+I+ R I +Y Sbjct: 187 AVGMATNIPPHNLGEVIDAAIAVMENPAMSLEELMQIVPGPDFPTGGMIL-GRSGIRSAY 245 Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303 RG +RA+ VEEV + ++VTEIPYQV KS +IEKIAEL+ KRI + DIRD Sbjct: 246 ETARGSIVMRAKVDVEEVRKDRTALIVTEIPYQVNKSTMIEKIAELVRDKRIEGISDIRD 305 Query: 304 ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363 ES V+ R PD+++ ++ S ++T F N+ L+ G+ P+ M L +L+ Sbjct: 306 ESDRSGMRVVIELKRDAVPDVILNQLYRFSQLQTSFGANIVALNGGK-PEQMNLSDMLRA 364 Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR 420 +++ R EV+ RR+ + ++ R IL GL IA NIDE+I +IR P + ++ R Sbjct: 365 FVSFREEVIQRRTRYLLKKARDRAHILVGLGIAVANIDEVIKLIRGAPDPATARAQLMER 424 Query: 421 --------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNL 454 + L+E Q AIL+LRL+ L + +I+ EL+ + Sbjct: 425 NWPAKDVESLILLIDDPRHMVQDDGTYKLSEEQARAILDLRLQRLTAMGRDEIEEELNKI 484 Query: 455 LAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAM 514 AE +L S + + E+ E+K+ F+ RRT E ++ + Sbjct: 485 GAEISDYLEILRSRARIQEIVRNEMLEIKQEFATP-----RRTEIIE---GGPDFDEEDL 536 Query: 515 IEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLL 566 I++E + V +S+ G+I R+ + S + K+ D + A+T +L Sbjct: 537 IQREDMVVTVSHGGYIKRVPLATYRAQRRGGKGRSGMATKDEDFVTRLFVANTHTPVLFF 596 Query: 567 STDG-----KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVT 604 S+ G K + LP G S G+A+ L+ L + I + Sbjct: 597 SSRGICYKMKVWRLPLGGPTS---RGKALINLLPLEQGEQITS 636 >gi|168229633|ref|ZP_02654691.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|194468612|ref|ZP_03074596.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194454976|gb|EDX43815.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|205335592|gb|EDZ22356.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] Length = 878 Score = 419 bits (1076), Expect = e-114, Method: Compositional matrix adjust. Identities = 277/747 (37%), Positives = 411/747 (55%), Gaps = 69/747 (9%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + V++ L+ YL YA+S I RA+PD+RDG KPVHRR+++AM+ +G D+ A+KKSA Sbjct: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG+IDGDSAAA RYTE R+ Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 ++A ++ ++++ VDF D Y+ + P V P+K PNLL NG+SGIAVGMAT+IP HN+ Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ LA IDN +ISIE L+E+I GPDFPT II R I E+YR GRG +RAR Sbjct: 188 TEVINGCLAYIDNEDISIEGLMEHIPGPDFPTAAII-NGRRGIEEAYRTGRGKVYIRARA 246 Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314 VE + G I+V EIPYQV K+RLIEKIAEL+ KR+ + +RDES +D +RIV+ Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKDGMRIVIE 306 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K ++ ++++ +++ + ++ F +NM L G+ P++M L I+ ++ HRREV+ R Sbjct: 307 VKRDAVG-EVVLNNLYSQTQLQVSFGINMVALHHGQ-PKIMNLKDIISAFVRHRREVVTR 364 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----------- 420 R+ F ++ R IL+ L IA NID II +IR P K ++SR Sbjct: 365 RTIFELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAALISRPWDLGNVAAML 424 Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457 + LTE Q AIL+LRL+ L LE ++ E LL + Sbjct: 425 ERAGDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQ 484 Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517 ++ +L S + I E+ +++ F G R T + AD + +I + Sbjct: 485 IAELLHILGSADRLMEVIREEMELIRDQF------GDERRTEITANSADINI--EDLISQ 536 Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569 E + V +S++G+++ + + SA KE D + L A+T D IL S+ Sbjct: 537 EDVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSR 596 Query: 570 GKAYTLPAGNLL-SGRG-HGEAIQLLIDLNHNQDIVTAFV----YDSTCKLLVVSSKGNA 623 G+ Y + L + RG G I L+ L N+ I TA + Y+ + + ++ G Sbjct: 597 GRLYWMKVYQLPEASRGARGRPIVNLLPLEANERI-TAILPVREYEEGVNVFMATASGTV 655 Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMS 682 +E G + ++ +++ V +G D V + K++ F D + M Sbjct: 656 KKTALTEFSRPRSAGIIAVNLNDGDELIGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAMG 715 Query: 683 R-GKGVRLQSYKDGGISDVICFKICEG 708 R GVR K G V+ I G Sbjct: 716 RTATGVR--GIKLAGDDKVVSLIIPRG 740 >gi|16765599|ref|NP_461214.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|56412831|ref|YP_149906.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|161613010|ref|YP_001586975.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|167549737|ref|ZP_02343496.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|168242385|ref|ZP_02667317.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168261717|ref|ZP_02683690.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168466034|ref|ZP_02699904.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168818000|ref|ZP_02830000.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194445296|ref|YP_002041533.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194450393|ref|YP_002046326.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|197248208|ref|YP_002147228.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197263978|ref|ZP_03164052.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197361764|ref|YP_002141400.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|207857691|ref|YP_002244342.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224583243|ref|YP_002637041.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|17865733|sp|P37411|GYRA_SALTY RecName: Full=DNA gyrase subunit A gi|16420810|gb|AAL21173.1| DNA gyrase, subunit A [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|56127088|gb|AAV76594.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|161362374|gb|ABX66142.1| hypothetical protein SPAB_00716 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194403959|gb|ACF64181.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194408697|gb|ACF68916.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|195631306|gb|EDX49866.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197093240|emb|CAR58685.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|197211911|gb|ACH49308.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197242233|gb|EDY24853.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|205325309|gb|EDZ13148.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205338650|gb|EDZ25414.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205344910|gb|EDZ31674.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205349514|gb|EDZ36145.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|206709494|emb|CAR33838.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224467770|gb|ACN45600.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|261247480|emb|CBG25307.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267994359|gb|ACY89244.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301158830|emb|CBW18343.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|320086709|emb|CBY96481.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|321223028|gb|EFX48099.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322617024|gb|EFY13930.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322617670|gb|EFY14569.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322624700|gb|EFY21529.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322630249|gb|EFY27019.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322634430|gb|EFY31163.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322639140|gb|EFY35832.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322640137|gb|EFY36803.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322645775|gb|EFY42299.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322651550|gb|EFY47925.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322656111|gb|EFY52410.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322659463|gb|EFY55710.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322665925|gb|EFY62108.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322669837|gb|EFY65978.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322673822|gb|EFY69919.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322678580|gb|EFY74636.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322683624|gb|EFY79638.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322687700|gb|EFY83670.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|322715321|gb|EFZ06892.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|323130602|gb|ADX18032.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|323196203|gb|EFZ81360.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323198371|gb|EFZ83473.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323204191|gb|EFZ89202.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323208577|gb|EFZ93516.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323212343|gb|EFZ97166.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323218250|gb|EGA02960.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323222992|gb|EGA07341.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323227427|gb|EGA11592.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323232245|gb|EGA16348.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323235722|gb|EGA19806.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323241118|gb|EGA25154.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323244860|gb|EGA28862.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323248571|gb|EGA32502.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323251591|gb|EGA35459.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323263082|gb|EGA46628.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323268142|gb|EGA51619.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323270765|gb|EGA54203.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|326628480|gb|EGE34823.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] gi|332989205|gb|AEF08188.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 878 Score = 419 bits (1076), Expect = e-114, Method: Compositional matrix adjust. Identities = 277/747 (37%), Positives = 411/747 (55%), Gaps = 69/747 (9%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + V++ L+ YL YA+S I RA+PD+RDG KPVHRR+++AM+ +G D+ A+KKSA Sbjct: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG+IDGDSAAA RYTE R+ Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 ++A ++ ++++ VDF D Y+ + P V P+K PNLL NG+SGIAVGMAT+IP HN+ Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ LA IDN +ISIE L+E+I GPDFPT II R I E+YR GRG +RAR Sbjct: 188 TEVINGCLAYIDNEDISIEGLMEHIPGPDFPTAAII-NGRRGIEEAYRTGRGKVYIRARA 246 Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314 VE + G I+V EIPYQV K+RLIEKIAEL+ KR+ + +RDES +D +RIV+ Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKDGMRIVIE 306 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K ++ ++++ +++ + ++ F +NM L G+ P++M L I+ ++ HRREV+ R Sbjct: 307 VKRDAVG-EVVLNNLYSQTQLQVSFGINMVALHHGQ-PKIMNLKDIISAFVRHRREVVTR 364 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----------- 420 R+ F ++ R IL+ L IA NID II +IR P K ++SR Sbjct: 365 RTIFELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAALISRPWDLGNVAAML 424 Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457 + LTE Q AIL+LRL+ L LE ++ E LL + Sbjct: 425 ERAGDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQ 484 Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517 ++ +L S + I E+ +++ F G R T + AD + +I + Sbjct: 485 IAELLHILGSADRLMEVIREEMELIRDQF------GDERRTEITANSADINI--EDLISQ 536 Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569 E + V +S++G+++ + + SA KE D + L A+T D IL S+ Sbjct: 537 EDVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSR 596 Query: 570 GKAYTLPAGNLL-SGRG-HGEAIQLLIDLNHNQDIVTAFV----YDSTCKLLVVSSKGNA 623 G+ Y + L + RG G I L+ L N+ I TA + Y+ + + ++ G Sbjct: 597 GRLYWMKVYQLPEASRGARGRPIVNLLPLEANERI-TAILPVREYEEGVNVFMATASGTV 655 Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMS 682 +E G + ++ +++ V +G D V + K++ F D + M Sbjct: 656 KKTALTEFSRPRSAGIIAVNLNDGDELIGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAMG 715 Query: 683 R-GKGVRLQSYKDGGISDVICFKICEG 708 R GVR K G V+ I G Sbjct: 716 RTATGVR--GIKLAGDDKVVSLIIPRG 740 >gi|78047228|ref|YP_363403.1| DNA gyrase subunit A [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78035658|emb|CAJ23349.1| DNA gyrase subunit A [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 900 Score = 419 bits (1076), Expect = e-114, Method: Compositional matrix adjust. Identities = 264/725 (36%), Positives = 385/725 (53%), Gaps = 65/725 (8%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 V+L + + YL YA+S I RA+PD RDG KPVHRR+++AM E+G A+ KSARIV Sbjct: 11 VNLEDEMRKSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMHELGAHSNKAYFKSARIV 70 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGDQSVYD+LVR+AQPF RY ++ GQGNFG++DGDSAAA RYTE+RM+++ Sbjct: 71 GDVIGKYHPHGDQSVYDTLVRMAQPFSLRYMMVDGQGNFGSVDGDSAAAMRYTESRMSRL 130 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A ++ +D++ VDF+ Y+E++ EP V P++FP+LL NG++GIAVGMAT+IP HN+ E Sbjct: 131 AHELMADIDKETVDFQPNYDEKEQEPTVMPTRFPSLLVNGSAGIAVGMATNIPPHNLTEA 190 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 A +ALID PE+ +E L+EYI GPDFPT GII I YR GRG R+RA+ VE Sbjct: 191 INACIALIDTPELDVEGLMEYIPGPDFPTAGII-NGTAGIAAGYRTGRGRVRIRAKADVE 249 Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319 G IVVTEIPYQV K+RLIEKIAEL+ K++ + ++RDES +D + R Sbjct: 250 VADNGREAIVVTEIPYQVNKARLIEKIAELVKEKKLEGISELRDESDKDGMRIYIEVKRG 309 Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379 ++++ +++ + ME F +NM L GR PQ+M L +L+ ++ HRREV+ RR+ F Sbjct: 310 ESAEVVLNNLYQQTQMEAVFGINMVALIDGR-PQLMNLKQMLEAFIRHRREVVTRRTIFE 368 Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSR---------------- 420 ++ R +L+GL +A NIDE+I +I+ P+ M+++ Sbjct: 369 LRKARARAHVLEGLTVALANIDEMIELIKTSANPQEARERMLAKTWQPGLVGALLGAAGA 428 Query: 421 ------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKID 462 + L+E Q IL +RL L LE+ ++ E LL E + Sbjct: 429 EASKPEDLPPGVGLIQGFYQLSEVQASQILEMRLHRLTGLEQEKLTDEYKQLLGVIEGLI 488 Query: 463 SLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITV 522 +L + I E+ ++E + G R T S D L +I E + V Sbjct: 489 RILENPDVLLQVIRDELINIREEY------GDERRTEIRHSEEDLDILD--LIAPEDVVV 540 Query: 523 VISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT 574 +S+ G+ + + + SA KE D + +T D +L ++ GK + Sbjct: 541 TLSHAGYAKRQPVSAYRAQRRGGRGRSAAATKEEDFIDQLWLVNTHDTLLTFTSSGKVFW 600 Query: 575 LPAGNL--LSGRGHGEAIQLLIDLNHN---QDIVTAFVYDSTCKLLVVSSKGNAFIVEES 629 LP L G I I L Q ++ Y + + G S Sbjct: 601 LPVHQLPEAGSNARGRPIINWIPLEAGERVQAVLPVREYADNRYVFFATRNGTVKKTPLS 660 Query: 630 EIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSRG---- 684 E +GK + + + + V GD V + N K + F + M R Sbjct: 661 EFAFRLARGKIAINLDEGDALVGVALTDGDRDVLLFASNGKTVRFGESTVRSMGRTATGV 720 Query: 685 KGVRL 689 +G+RL Sbjct: 721 RGIRL 725 >gi|157151071|ref|YP_001450518.1| DNA gyrase subunit A [Streptococcus gordonii str. Challis substr. CH1] gi|157075865|gb|ABV10548.1| DNA gyrase, A subunit [Streptococcus gordonii str. Challis substr. CH1] Length = 817 Score = 419 bits (1076), Expect = e-114, Method: Compositional matrix adjust. Identities = 263/715 (36%), Positives = 410/715 (57%), Gaps = 56/715 (7%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 ++N+ V+L ++ ++ YA+S I RA+PD+RDG KPVHRRI++ M+E+G+ K Sbjct: 3 DKNLVNVNLTSEMKTSFIDYAMSVIVSRALPDVRDGLKPVHRRILYGMNELGVTPDKPHK 62 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSARI G+V+GK HPHGD S+Y+++VR+AQ + RY L+ G GNFG++DGD AAA RYTE Sbjct: 63 KSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYTE 122 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 ARM+++A +L+ ++++ VDF D Y+ + EP+V P++FPNLL NG +GIAVGMAT+IP Sbjct: 123 ARMSKIALEMLRDINKNTVDFIDNYDANEREPIVLPARFPNLLVNGATGIAVGMATNIPP 182 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E +A ++DNPE + ++E + GPDFPTG +++ + I +Y G+G +R Sbjct: 183 HNLAESIDAVKLVMDNPEATTRDIMEVLPGPDFPTGALVM-GKSGIHRAYETGKGSIVLR 241 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312 +R +EE+ G IVVTE PY V K+++ E I L+ KRI + +RDES E VR V Sbjct: 242 SRTEIEEMKNGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVRFV 301 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 + + R +++ ++F L+ M+T F NM + G VP+++ L IL ++ H++EV+ Sbjct: 302 IEVR-RDASAHVILNNLFKLTQMQTNFSFNMLAIQNG-VPKILSLREILLAYIEHQKEVV 359 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVD 429 RR++F + R IL GLLIA +IDE+I IIRN + + + ++++F L+E Q Sbjct: 360 TRRTAFDKDKAEARAHILAGLLIALDHIDEVIRIIRNSETDAEAQAELMAKFELSERQSQ 419 Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489 AIL++RLR L LE +I+SE D L+A + +L ++ I E+ EVK F+ Sbjct: 420 AILDMRLRRLTGLERDKIQSEYDELIALIADLADILAKPERVLTIIREELDEVKRKFADE 479 Query: 490 TDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSL--------KSHSVDL 540 RRT E+ + +L+ + +IE+ + + +SN+G+I+ L K + Sbjct: 480 -----RRT---ELMVGEVLSLEDEDLIEEADVLITLSNKGYIKRLNQDEFTAQKRGGRGV 531 Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLLSGRG 585 K+ D +K + T DR+L + G+ Y LP NLL Sbjct: 532 QGTGVKDDDFVKELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYGRTAKGLPIVNLLK-LD 590 Query: 586 HGEAIQLLIDL--NHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK-GKTFL 642 GE IQ +I++ +H+QD F T +L VV A AN R+ G L Sbjct: 591 EGETIQTIINVEQDHSQDSYLFF----TTRLGVVKRTSVAD-------FANIRQNGLKAL 639 Query: 643 KVSSEEKMKLVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSR-GKGVRLQSYKDG 695 + E+++ V G ++G + F+ + MSR GVR + +DG Sbjct: 640 NLKDEDELINVFLTDGAADVIIGTKFGYSVRFNETAVRNMSRIATGVRGVNLRDG 694 >gi|294626374|ref|ZP_06704976.1| DNA gyrase subunit A [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|294665966|ref|ZP_06731230.1| DNA gyrase subunit A [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292599375|gb|EFF43510.1| DNA gyrase subunit A [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292604269|gb|EFF47656.1| DNA gyrase subunit A [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 899 Score = 419 bits (1076), Expect = e-114, Method: Compositional matrix adjust. Identities = 264/725 (36%), Positives = 385/725 (53%), Gaps = 65/725 (8%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 V+L + + YL YA+S I RA+PD RDG KPVHRR+++AM E+G A+ KSARIV Sbjct: 11 VNLEDEMRKSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMHELGAHSNKAYFKSARIV 70 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGDQSVYD+LVR+AQPF RY ++ GQGNFG++DGDSAAA RYTE+RM+++ Sbjct: 71 GDVIGKYHPHGDQSVYDTLVRMAQPFSLRYMMVDGQGNFGSVDGDSAAAMRYTESRMSRL 130 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A ++ +D++ VDF+ Y+E++ EP V P++FP+LL NG++GIAVGMAT+IP HN+ E Sbjct: 131 AHELMADIDKETVDFQPNYDEKEQEPTVMPTRFPSLLVNGSAGIAVGMATNIPPHNLTEA 190 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 A +ALID PE+ +E L+EYI GPDFPT GII I YR GRG R+RA+ VE Sbjct: 191 INACIALIDTPELDVEGLMEYIPGPDFPTAGII-NGTAGIAAGYRTGRGRVRIRAKADVE 249 Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319 G IVVTEIPYQV K+RLIEKIAEL+ K++ + ++RDES +D + R Sbjct: 250 VADNGREAIVVTEIPYQVNKARLIEKIAELVKEKKLEGISELRDESDKDGMRIYIEVKRG 309 Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379 ++++ +++ + ME F +NM L GR PQ+M L +L+ ++ HRREV+ RR+ F Sbjct: 310 ESAEVVLNNLYQQTQMEAVFGINMVALIDGR-PQLMNLKQMLEAFIRHRREVVTRRTIFE 368 Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSR---------------- 420 ++ R +L+GL +A NIDE+I +I+ P+ M+++ Sbjct: 369 LRKARARAHVLEGLTVALANIDEMIELIKTSANPQEARERMLAKTWQPGLVGALLGAAGA 428 Query: 421 ------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKID 462 + L+E Q IL +RL L LE+ ++ E LL E + Sbjct: 429 EASKPEDLPPGVGLIQGFYQLSEVQASQILEMRLHRLTGLEQEKLTDEYKQLLGVIEGLI 488 Query: 463 SLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITV 522 +L + I E+ ++E + G R T S D L +I E + V Sbjct: 489 RILENPDVLLQVIRDELINIREEY------GDERRTEIRHSEEDLDILD--LIAPEDVVV 540 Query: 523 VISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT 574 +S+ G+ + + + SA KE D + +T D +L ++ GK + Sbjct: 541 TLSHAGYAKRQPVSAYRAQRRGGRGRSAAATKEEDFIDQLWLVNTHDTLLTFTSSGKVFW 600 Query: 575 LPAGNL--LSGRGHGEAIQLLIDLNHN---QDIVTAFVYDSTCKLLVVSSKGNAFIVEES 629 LP L G I I L Q ++ Y + + G S Sbjct: 601 LPVHQLPEAGSNARGRPIINWIPLESGERVQAVLPVREYADNRYVFFATRNGTVKKTPLS 660 Query: 630 EIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSRG---- 684 E +GK + + + + V GD V + N K + F + M R Sbjct: 661 EFAFRLARGKIAINLDEGDALVGVALTDGDRDVLLFASNGKTVRFGESTVRSMGRTATGV 720 Query: 685 KGVRL 689 +G+RL Sbjct: 721 RGIRL 725 >gi|160914818|ref|ZP_02077032.1| hypothetical protein EUBDOL_00825 [Eubacterium dolichum DSM 3991] gi|158433358|gb|EDP11647.1| hypothetical protein EUBDOL_00825 [Eubacterium dolichum DSM 3991] Length = 824 Score = 419 bits (1076), Expect = e-114, Method: Compositional matrix adjust. Identities = 255/677 (37%), Positives = 402/677 (59%), Gaps = 30/677 (4%) Query: 26 LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85 ++ +L Y++S I ERA+PD+RDG KPVHRRI+HAM+E+G+ FKKSARIVGEVIGK Sbjct: 17 MKTSFLDYSMSVIVERALPDVRDGLKPVHRRILHAMNELGIVASKPFKKSARIVGEVIGK 76 Query: 86 LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145 HPHGD +VYD++VR+AQ F RY L+ G GNFG++DGD AAA RYTEARM+++A +L+ Sbjct: 77 YHPHGDTAVYDAMVRMAQDFSYRYMLVQGHGNFGSMDGDGAAAMRYTEARMSKIAMEMLK 136 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 ++++ VDF Y+ E+ EP V P++FPNLL NG+ GIAVGMAT+IP HN+ E +A A Sbjct: 137 DINKNTVDFVPNYDGEEKEPSVMPARFPNLLVNGSVGIAVGMATNIPPHNLGETIDAIFA 196 Query: 206 LIDNPEISIEKLLE-YIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRG 264 ++DNP+I++ +L++ YI GPDFPTGG+I+ R I ++Y GRG +R + +EE+ G Sbjct: 197 IMDNPDITVLELMDNYIFGPDFPTGGMIL-GRAGIRQAYETGRGSIMIRCKHHLEEMDNG 255 Query: 265 SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLFPKNRSLDPD 323 IVVTE+PYQV K+ LI KIA+L+ K+I + + DES E +RIV+ + + + D Sbjct: 256 KTRIVVTEVPYQVNKANLITKIADLVREKQIDGITYLNDESNREGIRIVIELR-KDVQVD 314 Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383 +++ +F ++ ++T F +NM L R P+ M + +L ++ H+ +V RR+ + ++ Sbjct: 315 VVLNQLFRMTSLQTSFGVNMLALH-DRSPKQMGIKELLGHYIDHQIDVTVRRTKYDLKKA 373 Query: 384 DRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAILNLRLRSLR 440 + R IL+GL IA +IDEII IIR N+ + + ++ F L+E Q +AIL +RLR L Sbjct: 374 EDRAHILEGLRIALDHIDEIIHIIRSSKNDSEARSRLMENFELSEIQANAILEMRLRRLT 433 Query: 441 KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500 LE +I++E LLA + +L + + I E+ EVK + RRT Sbjct: 434 GLERDKIENEYQELLALIIDLKDILANHDRVLQIIRDELTEVKNKYGDE-----RRT--- 485 Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD--------LSALHFKEGDSLK 552 E+S AD + +I E I + ++ G+I+ + + + + + E D ++ Sbjct: 486 EISDADYDMQDEDLIPVEDIVITMTTNGYIKRMPTDTYHTQNRGGRGIKGMAVNEDDIVE 545 Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD-----IVTAFV 607 + + T D +LL + GK Y + + + + + ++ LN ++D +V V Sbjct: 546 MLVPMSTHDFLLLFTNIGKVYRIKGYKVPNASRTAKGLPVVNLLNLDKDEKVKALVPMKV 605 Query: 608 YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGE 666 L+ V+ G V +E + + GK + + +++ V + TG D + + G Sbjct: 606 DHEAEYLMFVTKNGLVKRVPSAEFASIRQNGKIAITLREGDELVGVKETTGDDEIIIAGS 665 Query: 667 NRKLLIFSIDQIPEMSR 683 N K + F D + M R Sbjct: 666 NGKAVRFHEDGVRPMGR 682 >gi|156933159|ref|YP_001437075.1| DNA gyrase subunit A [Cronobacter sakazakii ATCC BAA-894] gi|156531413|gb|ABU76239.1| hypothetical protein ESA_00969 [Cronobacter sakazakii ATCC BAA-894] Length = 878 Score = 419 bits (1076), Expect = e-114, Method: Compositional matrix adjust. Identities = 275/734 (37%), Positives = 413/734 (56%), Gaps = 76/734 (10%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + V++ L+ YL YA+S I RA+PD+RDG KPVHRR+++AM+ +G D+ A+KKSA Sbjct: 8 ITPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG+IDGDSAAA RYTE R+ Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYTLVDGQGNFGSIDGDSAAAMRYTEIRL 127 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 ++A ++ +D++ VDF D Y+ + P V P+K PNLL NG SGIAVGMAT+IP HN+ Sbjct: 128 AKIAHELMADLDKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGASGIAVGMATNIPPHNL 187 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ LA ID+ +ISIE L+E+I GPDFPT II R I E+YR GRG +RAR Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAII-NGRRGIEEAYRTGRGKIYIRARA 246 Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314 VE + G I+V EIPYQV K+RLIEKIAEL+ KR+ + +RDES +D +RIV+ Sbjct: 247 EVEVDPKNGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K ++ ++++ +++ + ++ F +NM L G+ P++M L IL ++ HRREV+ R Sbjct: 307 IKRDAVG-EVVLNNLYSQTQLQVSFGINMVALHHGQ-PKIMTLKEILAAFVRHRREVVTR 364 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-------------------------- 408 R+ F ++ R IL+GL IA NID II +IR Sbjct: 365 RTIFELRKARERAHILEGLAIALANIDPIIELIRRAPTPSEAKAGLIAQAWELGTVSAML 424 Query: 409 ---NEDKPKP--------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457 +D +P + ++ LTE Q AIL+LRL+ L LE ++ E LL + Sbjct: 425 ERAGDDAARPEWLEPEFGIRDGKYWLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQ 484 Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517 ++ +L S + I E+ +++ F G R T + AD + +I + Sbjct: 485 IAELLHILGSADRLMEVIREELELIRDQF------GDERRTEITANSADINI--EDLINQ 536 Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569 E + V +S++G+++ + + SA KE D + L A+T D IL S+ Sbjct: 537 EDVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSR 596 Query: 570 GKAYTLPAGNLL-SGRG-HGEAIQLLIDLNHNQDIVTAFV----YDSTCKLLVVSSKGNA 623 G+ Y + L + RG G I L+ L N+ I TA + Y+ + + ++ G Sbjct: 597 GRLYWMKVYQLPEASRGARGRPIVNLLPLEANERI-TAILPVREYEEGVNVFMATASGT- 654 Query: 624 FIVEESEIIANTR-KGKTFLKVSSEEKMKLV-VKVTG--DHVAVVGENRKLLIFSIDQIP 679 V+++ + +R + + V+ E +L+ V +T D V + K++ F D + Sbjct: 655 --VKKTALTEFSRPRTAGIIAVNLNEGDELIGVDLTAGKDEVMLFSAQGKVVRFKEDAVR 712 Query: 680 EMSRG----KGVRL 689 M R +G+RL Sbjct: 713 PMGRTATGVRGIRL 726 >gi|126462055|ref|YP_001043169.1| DNA gyrase subunit A [Rhodobacter sphaeroides ATCC 17029] gi|126103719|gb|ABN76397.1| DNA gyrase, A subunit [Rhodobacter sphaeroides ATCC 17029] Length = 907 Score = 419 bits (1076), Expect = e-114, Method: Compositional matrix adjust. Identities = 254/671 (37%), Positives = 385/671 (57%), Gaps = 57/671 (8%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 VS+ ++ YL YA+S I RAIPDLRDG KPVHRRI++AM E G ++KSAR V Sbjct: 11 VSIAEEMKTAYLDYAMSVIVSRAIPDLRDGLKPVHRRILYAMHETGNTSDKPYRKSARPV 70 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+ +GK HPHGD ++YD+LVR+AQPF L+ GQGNFG++DGD+AAA RYTE RM + Sbjct: 71 GDTMGKYHPHGDGAIYDALVRMAQPFSMGLKLLDGQGNFGSMDGDNAAAMRYTEVRMDKP 130 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A +L +D+D VDF+D Y+ +D EP V P++FPN+L NG GIAVGMAT+IP HN+ E+ Sbjct: 131 AAFLLADIDKDTVDFQDNYDGKDREPTVLPARFPNMLVNGAGGIAVGMATNIPPHNLGEV 190 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 +A LA+I+NP+IS E+L+E I GPDFPTGG+I+ R ++Y GRG +RA+ VE Sbjct: 191 VDATLAMIENPDISTERLMEIIPGPDFPTGGVIL-GRSGARKAYLEGRGSVIMRAKARVE 249 Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE-DVRIVLFPKNR 318 E+ + + IV+ EIPYQV K+ +IEKIA+++ K+I + ++DES VR+V+ K R Sbjct: 250 EIRKDRYAIVLDEIPYQVNKATMIEKIADMVREKKIEGIAHVQDESDRVGVRVVIELK-R 308 Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378 P++++ ++ + M+T F NM L+ GR P+ + L L +L R +V+ RR+++ Sbjct: 309 DATPEVVLNQLWRFTPMQTTFGCNMLALNGGR-PEQLTLRDFLSHFLTFREDVVARRTAY 367 Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP----KPVMVSR-------------- 420 ++ R IL GL +A N+DE++A IR+ P + +M R Sbjct: 368 ELRKARERSHILCGLAVAVSNVDEVVATIRSSADPAEARERLMTRRWPAADIADYIRLID 427 Query: 421 -----------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGK 469 ++L+E Q AIL+LRL+ L + ++ EL L A+ +L S + Sbjct: 428 DPSHTINEDGTYNLSEIQARAILDLRLQRLTAMGVKEVTDELAELAAKIRDYLDILGSRE 487 Query: 470 QQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW 529 + I+ E+REVK++F+ RRT E+S + +IE+E + V I++ G+ Sbjct: 488 RIMAIISDELREVKDLFAVP-----RRT---EISEWAGDLEDEDLIEREDMVVTITSGGY 539 Query: 530 I--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL- 580 I RS + L+++ KE D + A+T ++L +TDG Y L L Sbjct: 540 IKRTPLAEFRSQRRGGKGLASMATKEDDVVTTLFVANTHTQLLFFTTDGMVYDLKCWRLP 599 Query: 581 LSGR-GHGEAIQLLIDLNHNQDIVTAFVYDST------CKLLVVSSKGNAFIVEESEIIA 633 L GR G+AI ++ + I D +++ +S+G+ S+ Sbjct: 600 LGGRTAKGKAIVNILPIATGISIAALMKIDEPEEEWDRLQVVFATSEGDVRRNRLSDFTN 659 Query: 634 NTRKGKTFLKV 644 R GK +K+ Sbjct: 660 VKRNGKIAMKL 670 >gi|311694251|gb|ADP97124.1| DNA gyrase subunit A-like protein [marine bacterium HP15] Length = 873 Score = 419 bits (1076), Expect = e-114, Method: Compositional matrix adjust. Identities = 251/605 (41%), Positives = 367/605 (60%), Gaps = 62/605 (10%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 V++ L++ YL YA+S I RA+PD+RDG KPVHRR++ AMSE+ D+ A+KKSAR+V Sbjct: 11 VNIEDELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELNNDWNKAYKKSARVV 70 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGD +VYD++VR+AQPF RYPL+ GQGNFG+IDGD+AAA RYTE RM ++ Sbjct: 71 GDVIGKYHPHGDSAVYDTIVRMAQPFSLRYPLVDGQGNFGSIDGDNAAAMRYTEIRMEKI 130 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A +L +D++ VDF D Y+ + P V P++ PNLL NG+SGIAVGMAT+IP HN+ E+ Sbjct: 131 AHSLLADLDKETVDFVDNYDGTERIPEVLPTRVPNLLVNGSSGIAVGMATNIPPHNLTEV 190 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 LALIDNP+++I++L+E+I GPDFPT GII R IVE+YR GRG +RAR +E Sbjct: 191 VNGCLALIDNPDLTIDELMEFIPGPDFPTEGII-NGRAGIVEAYRTGRGRIYIRARHEIE 249 Query: 260 EVGRGSW-CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFPKN 317 + + I++TE+PYQ+ K+RLIEKIAEL+ KR+ + ++RDES E +R+V+ + Sbjct: 250 HDNKTNRDAIIITELPYQLNKARLIEKIAELVKEKRLEGISELRDESNKEGIRVVIELR- 308 Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377 R +PD+++ ++F + +ET F +NM L G P+ + L +L ++ HRREV+ RR+ Sbjct: 309 RGENPDVVVNNLFAQTQLETVFGINMVGLINGE-PKTLNLKQLLDAFVRHRREVVTRRTI 367 Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN-----EDKPKPV-----------MVSR- 420 + ++ R IL+GL +A NIDEII +I+ E K K + M+ R Sbjct: 368 YELRKARERGHILEGLTVALANIDEIIELIKASPSAAEAKEKLIAKGWSPGDVMAMLERA 427 Query: 421 --------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEK 460 + L+ Q AIL+LRL L LE ++++E +L +K Sbjct: 428 GQDACRPDDLPEIYGLREGLYHLSPEQAQAILDLRLHRLTGLETEKLQNEYKEIL---DK 484 Query: 461 IDSLLN--SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518 I LL+ ++ Q+ IRE E+ + T+ G R T SR D +I++E Sbjct: 485 IADLLDILGDPERLLQV---IRE--ELEAIVTEFGDERRTEITSSRRDLTIAD--LIDEE 537 Query: 519 PITVVISNRGWIRSLKSHSVDL--------SALHFKEGDSLKIALHAHTTDRILLLSTDG 570 + V IS+ G+ ++ +A K+ D ++ L A++ D IL S G Sbjct: 538 DLVVTISHSGYAKTQAVEDYQAQRRGGRGKAATSMKDEDFVEKLLVANSHDTILCFSNRG 597 Query: 571 KAYTL 575 K Y L Sbjct: 598 KVYWL 602 >gi|254475888|ref|ZP_05089274.1| DNA gyrase, A subunit [Ruegeria sp. R11] gi|214030131|gb|EEB70966.1| DNA gyrase, A subunit [Ruegeria sp. R11] Length = 913 Score = 419 bits (1076), Expect = e-114, Method: Compositional matrix adjust. Identities = 256/701 (36%), Positives = 394/701 (56%), Gaps = 63/701 (8%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 VS+ + YL YA+S I RAIPDLRDG KPVHRRI++AM E+G ++KSAR V Sbjct: 26 VSIETEMRNSYLDYAMSVIVSRAIPDLRDGLKPVHRRILYAMHEVGNSHDKPYRKSARPV 85 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+V+GK HPHGD ++YD+LVR+AQ F PL+ GQGNFG++DGD+ AA RYTE RM + Sbjct: 86 GDVMGKYHPHGDSAIYDALVRMAQDFSMSLPLLDGQGNFGSMDGDNPAAMRYTEVRMDKP 145 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A IL +++D VDF+D Y+ +D EP V P++FPN+L NG GIAVGMAT+IP HN+ E+ Sbjct: 146 AASILADIEKDTVDFQDNYDGKDREPTVLPARFPNMLVNGAGGIAVGMATNIPPHNLGEV 205 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 +A LALI++P+++ E+L+EYI GPDFPTGG+++ R ++Y GRG +RA+ VE Sbjct: 206 VDATLALIEDPDLTSEQLIEYIPGPDFPTGGVML-GRSGARKAYLEGRGSVIIRAKTKVE 264 Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKNR 318 E+ + + IVV EIPYQV K+ +IEKIAE + KRI + ++DES + VR+V+ K R Sbjct: 265 EIRKDRYAIVVEEIPYQVNKAAMIEKIAEQVREKRIEGVAHVQDESDRNGVRVVVELK-R 323 Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378 P++++ ++ S M+T F NM L+ GR P+ + L L ++ R +V+ RR+++ Sbjct: 324 DATPEVVLNQLYRFSPMQTSFGCNMLALNGGR-PEQLTLRRFLSSFIDFREDVVARRTAY 382 Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---------------------------D 411 ++ R IL GL +A N+DE++A IR D Sbjct: 383 DLRKARERSHILCGLAVAVSNVDEVVATIRASADAAEARHKLMTRRWPASDIAPYIRLID 442 Query: 412 KPKPVMV--SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGK 469 P M ++L+E Q AIL LRL+ L ++ ++ EL+ L + ++ +L+S + Sbjct: 443 DPTHTMNDDGTYNLSEVQARAILELRLQRLTQIGVKEVTDELEELAGKIKEYLEILSSRE 502 Query: 470 QQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW 529 + I+ E+REV++ F+ RRT + S + +IE+E + V I++ G+ Sbjct: 503 RILGIISDELREVRDNFAVP-----RRTEIVDWS---GDMEDEDLIEREDMVVTITSGGY 554 Query: 530 I--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL 581 I R+ K LS + KE D + A+T ++L +TDG Y L L Sbjct: 555 IKRTPLADFRAQKRGGKGLSGMQTKEEDVVTNLFVANTHTQLLFFTTDGMVYKLKTWRLP 614 Query: 582 SG--RGHGEAIQLLIDLNHNQDIVTAFVYD------STCKLLVVSSKGNAFIVEESEIIA 633 G G+AI ++ + I D +++ +S G+ S+ Sbjct: 615 QGGRTSKGKAIVNILPIPTGVSIAAIMPVDVPDEDWEKLQVIFATSAGDVRRNRLSDFTN 674 Query: 634 NTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFS 674 R GK +K+ + +KLV + + E+ +++F+ Sbjct: 675 VRRNGKIAMKLPEDGSVKLV------NARICSEDDDVMLFT 709 >gi|325846382|ref|ZP_08169351.1| DNA gyrase, A subunit [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325481566|gb|EGC84606.1| DNA gyrase, A subunit [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 813 Score = 419 bits (1076), Expect = e-114, Method: Compositional matrix adjust. Identities = 242/605 (40%), Positives = 386/605 (63%), Gaps = 29/605 (4%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 +N+ V L + YL Y++S I RA+PD+RDG KPVHRRI++ M +GLD +K Sbjct: 7 QNIIEVELEEQMRSAYLEYSMSVIVSRALPDVRDGLKPVHRRILYGMEGLGLDPNKPTRK 66 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 SAR+VGEV+GK HPHGD ++YD+LVRLAQ F RYPL +GQGNFG+IDGD AAA RYTE Sbjct: 67 SARVVGEVMGKFHPHGDSAIYDALVRLAQDFSTRYPLANGQGNFGSIDGDDAAAMRYTEV 126 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 +M+++A+ +L+ +++D VDF ++EE+ EP V PS+FPNLL NG++GIAVGMAT++ H Sbjct: 127 KMSKIAKEMLRDINKDTVDFMPNFDEEEKEPTVLPSRFPNLLVNGSNGIAVGMATNMAPH 186 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 N+ + +A +A ++NPEIS+++L + I GPDFPTG I+ + I ++Y+ GRG ++RA Sbjct: 187 NLGDSIDACIAYMNNPEISVKELADIIKGPDFPTGAQIL-GKAGIKKAYKTGRGKLKLRA 245 Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVL 313 +E + I+VTEIPYQV K+ LI+KIAE + K++ + DIRDES + +RIV+ Sbjct: 246 VARIEPFKKNRERIIVTEIPYQVNKANLIKKIAEYVKDKKLEGISDIRDESDRKGMRIVI 305 Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373 K R + ++++ +++ + +ET F + +N+ + VP+++ L ++K ++ H+++V+ Sbjct: 306 EVK-RDANANIVLNNLYKQTQLETTFGI-INLALVDGVPKILDLKELIKYYVKHQKDVVR 363 Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDA 430 RR+ F + +R I++GL+IA NIDEII IIR + D+ K + +F LT+ Q A Sbjct: 364 RRTKFDLDKAQKRKHIVEGLIIAIDNIDEIIKIIRSSYDNDQIKKIFNEKFGLTDPQSQA 423 Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEK-EKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489 IL+++L+ L LE ++++E D LAEK E S+LN ++ + I EI E+KE ++ Sbjct: 424 ILDMQLKRLSGLEIEKLQAE-DKELAEKIEYFTSILNDEEKLISVIEEEILEIKEKYADD 482 Query: 490 TDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSLKSHSVD--------L 540 RRT D+ + +IEKE + + +++ G+I+ L ++ + Sbjct: 483 -----RRTKIV----PDEGEFDIEELIEKEDVLISLTHDGYIKRLPINTYKVQNRGGKGI 533 Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNH 598 SA + KE D ++ L +T + +L + G+ Y+L + S + G+AI LI L+ Sbjct: 534 SAGNTKENDFIQKILTTNTHESLLCFTNLGRVYSLKCYEIPEASRQSRGQAIINLISLSS 593 Query: 599 NQDIV 603 ++ I Sbjct: 594 DEKIT 598 >gi|167629195|ref|YP_001679694.1| DNA gyrase, a subunit [Heliobacterium modesticaldum Ice1] gi|167591935|gb|ABZ83683.1| DNA gyrase, a subunit [Heliobacterium modesticaldum Ice1] Length = 812 Score = 419 bits (1076), Expect = e-114, Method: Compositional matrix adjust. Identities = 230/571 (40%), Positives = 354/571 (61%), Gaps = 23/571 (4%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 V + L +++ +L Y++S I RA+PD+RDG KPVHRRI++ + E G + KSA Sbjct: 8 VVPIKLEEEMKKSFLDYSMSVIVSRALPDVRDGLKPVHRRILYTLYETGRAPDKPYSKSA 67 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 +VG+V+G+ HPHGD ++YD+ VRLAQ F RY LI G GNFG+IDGD AAA RYTE RM Sbjct: 68 GLVGDVMGRYHPHGDSAIYDATVRLAQDFSTRYMLIDGHGNFGSIDGDPAAAMRYTELRM 127 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 ++ IL +D++ VDF+ Y+++ EP V PS+ PNLL NG+SGIAVGMAT+IP HN+ Sbjct: 128 AKITSYILADIDKNTVDFKPNYDDKREEPTVLPSRVPNLLLNGSSGIAVGMATNIPPHNL 187 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 EI +A + +I+NP+ ++E L+ + GPDFPTG +I+ RE I ++Y GRG +RA+ Sbjct: 188 AEIIDAVIMMIENPKATVEDLMRVVKGPDFPTGALIM-GREGIRQAYTTGRGSIIMRAKA 246 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316 +E++ I+V EIPYQV KS+L+E+IAEL+ KR+ + D+RDES ++ Sbjct: 247 RIEKMNGNKMRILVHEIPYQVNKSKLLERIAELVRDKRVDGITDLRDESDRRGMQIVIEL 306 Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376 R ++P +++ +F + M+ F + M L G VP+V+ L +L +L H+++V+ RR+ Sbjct: 307 RRDVNPQIVLNQLFKYTQMQETFGVIMLALVDG-VPKVLNLRDMLYYYLEHQKDVIVRRT 365 Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAII---RNEDKPKPVMVSRFSLTENQVDAILN 433 + ++ + R IL+GL IA NID II II R+ED+ +P+++ F+L+E Q AIL+ Sbjct: 366 RYDLEKAEARAHILEGLRIAIDNIDRIIEIIRTSRDEDEARPILMGEFNLSEKQAQAILD 425 Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493 +RL+ L LE +I++E LL+ ++L+S K + I EI E+KE F+ Sbjct: 426 MRLKRLAGLEREKIENEYQELLSSIAYYRAVLHSEKMVLDIIKKEISEIKEKFADP---- 481 Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD--------LSALHF 545 RRT E++ + + +I +E + I++ G+I+ L ++ ++ + Sbjct: 482 -RRT---EITSSGADIDVEDLIAEEDAVITITHNGYIKRLPVNTYKAQRRGGRGVTGMGT 537 Query: 546 KEGDSLKIALHAHTTDRILLLSTD-GKAYTL 575 KE D ++ L TT LL TD GK Y L Sbjct: 538 KEDDFVE-HLFVTTTHHTLLFFTDRGKVYRL 567 >gi|16761200|ref|NP_456817.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|213646449|ref|ZP_03376502.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|25292862|pir||AF0790 DNA topoisomerase (ATP-hydrolysing) (EC 5.99.1.3) - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16503499|emb|CAD07504.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar Typhi] Length = 878 Score = 419 bits (1076), Expect = e-114, Method: Compositional matrix adjust. Identities = 277/747 (37%), Positives = 411/747 (55%), Gaps = 69/747 (9%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + V++ L+ YL YA+S I RA+PD+RDG KPVHRR+++AM+ +G D+ A+KKSA Sbjct: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG+IDGDSAAA RYTE R+ Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 ++A ++ ++++ VDF D Y+ + P V P+K PNLL NG+SGIAVGMAT+IP HN+ Sbjct: 128 AKIAHGLMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ LA IDN +ISIE L+E+I GPDFPT II R I E+YR GRG +RAR Sbjct: 188 TEVINGCLAYIDNEDISIEGLMEHIPGPDFPTAAII-NGRRGIEEAYRTGRGKVYIRARA 246 Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314 VE + G I+V EIPYQV K+RLIEKIAEL+ KR+ + +RDES +D +RIV+ Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKDGMRIVIE 306 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K ++ ++++ +++ + ++ F +NM L G+ P++M L I+ ++ HRREV+ R Sbjct: 307 VKRDAVG-EVVLNNLYSQTQLQVSFGINMVALHHGQ-PKIMNLKDIISAFVRHRREVVTR 364 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----------- 420 R+ F ++ R IL+ L IA NID II +IR P K ++SR Sbjct: 365 RTIFELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAALISRPWDLGNVAAML 424 Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457 + LTE Q AIL+LRL+ L LE ++ E LL + Sbjct: 425 ERAGDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQ 484 Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517 ++ +L S + I E+ +++ F G R T + AD + +I + Sbjct: 485 IAELLHILGSADRLMEVIREEMELIRDQF------GDERRTEITANSADINI--EDLISQ 536 Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569 E + V +S++G+++ + + SA KE D + L A+T D IL S+ Sbjct: 537 EDVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSR 596 Query: 570 GKAYTLPAGNLL-SGRG-HGEAIQLLIDLNHNQDIVTAFV----YDSTCKLLVVSSKGNA 623 G+ Y + L + RG G I L+ L N+ I TA + Y+ + + ++ G Sbjct: 597 GRLYWMKVYQLPEASRGARGRPIVNLLPLEANERI-TAILPVREYEEGVNVFMATASGTV 655 Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMS 682 +E G + ++ +++ V +G D V + K++ F D + M Sbjct: 656 KKTALTEFSRPRSAGIIAVNLNDGDELIGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAMG 715 Query: 683 R-GKGVRLQSYKDGGISDVICFKICEG 708 R GVR K G V+ I G Sbjct: 716 RTATGVR--GIKLAGDDKVVSLIIPRG 740 >gi|198243898|ref|YP_002216341.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|197938414|gb|ACH75747.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] Length = 878 Score = 419 bits (1076), Expect = e-114, Method: Compositional matrix adjust. Identities = 277/747 (37%), Positives = 411/747 (55%), Gaps = 69/747 (9%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + V++ L+ YL YA+S I RA+PD+RDG KPVHRR+++AM+ +G D+ A+KKSA Sbjct: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG+IDGDSAAA RYTE R+ Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 ++A ++ ++++ VDF D Y+ + P V P+K PNLL NG+SGIAVGMAT+IP HN+ Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ LA IDN +ISIE L+E+I GPDFPT II R I E+YR GRG +RAR Sbjct: 188 TEVINGCLAYIDNEDISIEGLMEHIPGPDFPTAAII-NGRRGIEEAYRTGRGKVYIRARA 246 Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314 VE + G I+V EIPYQV K+RLIEKIAEL+ KR+ + +RDES +D +RIV+ Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKDGMRIVIE 306 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K ++ ++++ +++ + ++ F +NM L G+ P++M L I+ ++ HRREV+ R Sbjct: 307 VKRDAVG-EVVLNNLYSQTQLQVSFGINMVALHHGQ-PKIMNLKDIISAFVRHRREVVTR 364 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----------- 420 R+ F ++ R IL+ L IA NID II +IR P K ++SR Sbjct: 365 RTIFELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAALISRPWDLGNVAAML 424 Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457 + LTE Q AIL+LRL+ L LE ++ E LL + Sbjct: 425 ERAGDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQ 484 Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517 ++ +L S + I E+ +++ F G R T + AD + +I + Sbjct: 485 IAELLHILGSADRLMEVIREEMELIRDQF------GDERRTEITANSADINI--EDLISQ 536 Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569 E + V +S++G+++ + + SA KE D + L A+T D IL S+ Sbjct: 537 EDVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSR 596 Query: 570 GKAYTLPAGNLL-SGRG-HGEAIQLLIDLNHNQDIVTAFV----YDSTCKLLVVSSKGNA 623 G+ Y + L + RG G I L+ L N+ I TA + Y+ + + ++ G Sbjct: 597 GRLYWMKVYQLPEASRGARGRPIVNLLPLEANERI-TAILPVREYEEGVNVFMATASGTV 655 Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMS 682 +E G + ++ +++ V +G D V + K++ F D + M Sbjct: 656 KKTALTEFSRPRSAGIIAVNLNDGDELIGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAMG 715 Query: 683 R-GKGVRLQSYKDGGISDVICFKICEG 708 R GVR K G V+ I G Sbjct: 716 RTATGVR--GIKLAGDDKVVSLIIPRG 740 >gi|166362461|gb|ABY87166.1| DNA gyrase A [Xanthomonas albilineans] Length = 935 Score = 419 bits (1076), Expect = e-114, Method: Compositional matrix adjust. Identities = 278/729 (38%), Positives = 399/729 (54%), Gaps = 93/729 (12%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 V+L + + YL YA+S I RA+PD RDG KPVHRR++ AM+E+G + KSARIV Sbjct: 11 VNLEDEMRKSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMNELGAHSNKPYYKSARIV 70 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGDQSVYD+LVR+AQPF RY L+ GQGNFG++DGDSAAA RYTEARM+++ Sbjct: 71 GDVIGKYHPHGDQSVYDTLVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEARMSRL 130 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 ++ +D++ VDF+ Y+E++ EP V P++FPNLL NG++GIAVGMAT+IP HN+ E Sbjct: 131 THELIADIDKETVDFQPNYDEKEQEPSVMPTRFPNLLVNGSAGIAVGMATNIPPHNLTES 190 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 A +ALIDNP+I ++ L+EYI GPDFPT GI V I+ YR GRG R+RAR +E Sbjct: 191 INACIALIDNPQIDVDGLMEYIPGPDFPTAGI-VNGTAGIIAGYRTGRGRVRMRARAEIE 249 Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319 G IVVTEIPYQV K+RLIEKIAEL+ K++ + ++RDES +D + R Sbjct: 250 IQDNGREAIVVTEIPYQVNKARLIEKIAELVKEKKLEGISELRDESDKDGMRIYIEVKRG 309 Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379 D+++ +++ + ME+ F +NM L GR PQ++ L +L+ ++ HRREV+ RR+ F Sbjct: 310 EAADVVLNNLYQQTQMESVFGINMVALVDGR-PQLLNLKQLLEAFVRHRREVVTRRTIFE 368 Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP------------KPVMV--------- 418 ++ R IL+GL +A NIDE+I +I+ P +P +V Sbjct: 369 LRKARARAHILEGLTVALANIDEMIELIKTSANPTEARERMLAKTWQPGLVGALLSAAGA 428 Query: 419 --SR--------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKID 462 SR + LTE Q IL +RL L LE+ ++ E LL E I Sbjct: 429 EASRPDDLPSGVGLGAGGYQLTEVQATQILEMRLHRLTGLEQERLTEEYKQLL---EAIS 485 Query: 463 SLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITV 522 L+ + + + IRE E+ S + G R T S D L +I E + V Sbjct: 486 GLIRI-LENPDVLLEVIRE--ELVSIREEYGDARRTEIRHSEEDLDILD--LIAPEDVVV 540 Query: 523 VISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT 574 +S+ G+ + + + SA KE D + +T D +L ++ GK + Sbjct: 541 TLSHAGYAKRQPVSAYRAQRRGGRGRSAAATKEEDFIDHLWLVNTHDTLLTFTSSGKVFW 600 Query: 575 LP------AGNLLSGRG--------HGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSK 620 LP AG GR GE +Q ++ + D +V+ +T K +V + Sbjct: 601 LPVYQLPEAGPNARGRPVINWIPLEQGERVQAVLPVREYAD--GHYVFFATRKGMVKKTP 658 Query: 621 GNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPE 680 SE ++GK + ++ +E LV VA+ R +L+F+ Sbjct: 659 -------LSEFAYQLKRGK--VAINLDEGDALV------DVALTDGERDVLLFA------ 697 Query: 681 MSRGKGVRL 689 S GK VR Sbjct: 698 -SNGKTVRF 705 >gi|86133996|ref|ZP_01052578.1| DNA gyrase subunit A [Polaribacter sp. MED152] gi|85820859|gb|EAQ42006.1| DNA gyrase subunit A [Polaribacter sp. MED152] Length = 838 Score = 419 bits (1076), Expect = e-114, Method: Compositional matrix adjust. Identities = 232/641 (36%), Positives = 374/641 (58%), Gaps = 39/641 (6%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 E + +++ ++ Y+ Y++S I RA+PD+RDG KPVHRR+++ M E+G+ A+KK Sbjct: 5 EKLIPINIEEQMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMHELGIKATGAYKK 64 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 SARIVGEV+GK HPHGD SVYDS+VR+AQ + RY ++ GQGNFG++DGDS AA RYTE Sbjct: 65 SARIVGEVLGKYHPHGDTSVYDSMVRMAQDWSVRYMMVDGQGNFGSVDGDSPAAMRYTEV 124 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 RM +++E +L +++D VD +++ EPVV P++ PNLL NG SGIAVGMAT++ H Sbjct: 125 RMQKISEEMLADIEKDTVDHSLNFDDTLQEPVVLPTRIPNLLVNGASGIAVGMATNMAPH 184 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 N+ E+ +A I+N +I I++L++++ PDFPTGGII + + +++ GRG +RA Sbjct: 185 NLTEVINGTVAYIENRDIEIDELMQHVTAPDFPTGGIIY-GYDGVRDAFHTGRGRIVMRA 243 Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314 + +EEV +G CI+VTEIPYQV K+ +I+K A+L+ K+I + +IRDES + +++ Sbjct: 244 KAVIEEV-KGRECIIVTEIPYQVNKADMIKKTADLVNEKKISGIANIRDESDRNGMRIVY 302 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 R P++++ +F + ++T F +N L GR P+ + L ++ ++ HR EV+ R Sbjct: 303 VLKRDAIPNIVLNKLFKYTQLQTSFSVNNIALVNGR-PEQLNLKQLIHYFVEHRHEVVVR 361 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAI 431 R+ + ++ + R IL+GL+IA NIDE+I IIR N D+ + ++ RF LTE Q AI Sbjct: 362 RTEYELKKAEARAHILEGLIIASDNIDEVIKIIRASSNADEARASLIERFELTEIQAKAI 421 Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491 + +RLR L LE+ ++++E D ++ + +L + +++ I E+ +KE + Sbjct: 422 VEMRLRQLTGLEQDKLRAEFDEIMVTIADLKDILANEPRRYQIIKDELLHIKEKY----- 476 Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSVDLSALHFKEG- 548 G R + E + D + MI + V ISN G+++ +L + V ++G Sbjct: 477 -GDERRSTIEYAGGDMRI--EDMIPDTKVVVTISNAGYLKRTNLDEYKVQNRGGRGQKGA 533 Query: 549 -----DSLKIALHAHTTDRILLLSTDGK-----AYTLPAGNLLSGRGHGEAIQLLIDLNH 598 D L+ ++ + GK Y +P G G A+Q LI++ Sbjct: 534 TTRNEDFLEHLFVGTNHQYMMFFTQKGKVFWMRVYEIPEG---GKNTKGRAMQNLINIEQ 590 Query: 599 NQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGK 639 + DS LV N + +I T+KG+ Sbjct: 591 D---------DSVKAFLVTQDLKNEEYINSHYVIMATKKGQ 622 >gi|73916140|gb|AAZ92938.1| DNA gyrase subunit A [Streptococcus pneumoniae] Length = 822 Score = 419 bits (1076), Expect = e-114, Method: Compositional matrix adjust. Identities = 257/706 (36%), Positives = 414/706 (58%), Gaps = 38/706 (5%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 ++N+ V+L ++ ++ YA+S I RA+PD+RDG KPVHRRI++ M+E+G+ K Sbjct: 3 DKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHK 62 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSARI G+V+GK HPHGD S+Y+++VR+AQ + RY L+ G GNFG++DGDSAAA RYTE Sbjct: 63 KSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYTE 122 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 ARM+++A +L+ ++++ VDF D Y+ + EP+V P++FPNLL NG +GIAVGMAT+IP Sbjct: 123 ARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIPP 182 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E +A ++DNPE++ + L+E + GPDFPTG +++ + I ++Y G+G +R Sbjct: 183 HNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVM-GKSGIHKAYETGKGSIALR 241 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312 +R +E G IVVTE PY V K+++ E I L+ KRI + +RDES E VR V Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 + K R ++++ ++F ++ M+T F NM + G +P+++ L IL ++ H++EV+ Sbjct: 302 IEVK-RDASANVILNNLFKMTQMQTNFGFNMLAIQNG-IPKILSLRQILDAYIEHQKEVV 359 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVD 429 RR+ F + + R IL+GLLIA +IDE+I IIR + + + ++S+F L+E Q Sbjct: 360 VRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSKFKLSERQSQ 419 Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489 AIL++RLR L LE +I+SE D+LLA + +L ++ I E+ EVK FS Sbjct: 420 AILDMRLRRLTGLERDKIQSEYDDLLALIADLADILAKPERVSQIIKDELDEVKRKFSD- 478 Query: 490 TDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSL--------KSHSVDL 540 +RRT E+ +L+ + +IE+ + + +SNRG+I+ L K + Sbjct: 479 ----KRRT---ELMVGQVLSLEDEDLIEESDVLITLSNRGYIKRLDQDEFTAQKRGGRGV 531 Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS-GR-GHGEAIQLLIDLNH 598 K+ D ++ + T D +L + G+ Y L + GR G + L+ L+ Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDE 591 Query: 599 NQDIVTAFVYDS----TCKLLVVSSKGNAFIVEESEI--IANTRK-GKTFLKVSSEEKMK 651 ++ I T +S L + G IV+ + + AN R+ G L + E+++ Sbjct: 592 DESIQTVINVESDRSDDAYLFFTTRHG---IVKRTSVKEFANIRQNGLKALNLKDEDELI 648 Query: 652 LVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSR-GKGVRLQSYKDG 695 V+ GD ++G + F+ + MSR GV+ + ++G Sbjct: 649 NVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMSRIATGVKGVNLREG 694 >gi|73916122|gb|AAZ92929.1| DNA gyrase subunit A [Streptococcus pneumoniae] Length = 822 Score = 419 bits (1076), Expect = e-114, Method: Compositional matrix adjust. Identities = 257/706 (36%), Positives = 415/706 (58%), Gaps = 38/706 (5%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 ++N+ V+L ++ ++ YA+S I RA+PD+RDG KPVHRRI++ M+E+G+ K Sbjct: 3 DKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHK 62 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSARI G+V+GK HPHGD S+Y+++VR+AQ + RY L+ G GNFG++DGDSAAA RYTE Sbjct: 63 KSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYTE 122 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 ARM+++A +L+ ++++ VDF D Y+ + EP+V P++FPNLL NG +GIAVGMAT+IP Sbjct: 123 ARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIPP 182 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E +A ++DNPE++ + L+E + GPDFPTG +++ + I ++Y G+G +R Sbjct: 183 HNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVM-GKSGIHKAYETGKGSIVLR 241 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312 +R +E G IVVTE PY V K+++ E I L+ KRI + +RDES E VR V Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 + K R ++++ ++F ++ M+T F NM + G +P+++ L IL ++ H++EV+ Sbjct: 302 IEVK-RDASANVILNNLFKMTQMQTNFGFNMLAIQNG-IPKILSLRQILDAYIEHQKEVV 359 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVD 429 RR+ F + + R IL+GLLIA +IDE+I IIR + + + ++S+F L+E Q Sbjct: 360 VRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSKFKLSERQSQ 419 Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489 AIL++RLR L LE +I+SE D+LLA + +L ++ I E+ EVK FS Sbjct: 420 AILDMRLRRLTGLERDKIQSEYDDLLALIADLADILAKPERVSQIIKDELDEVKRKFSD- 478 Query: 490 TDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSL--------KSHSVDL 540 +RRT E+ +L+ + +IE+ + + +SNRG+I+ L K + Sbjct: 479 ----KRRT---ELMVGQILSLEDEDLIEESDVLITLSNRGYIKRLDQDEFTAQKRGGRGV 531 Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS-GR-GHGEAIQLLIDLNH 598 K+ D ++ + T D +L + G+ Y L ++ GR G + L+ L+ Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYDIPEYGRTAKGLPVVNLLKLDE 591 Query: 599 NQDIVTAFVYDS----TCKLLVVSSKGNAFIVEESEI--IANTRK-GKTFLKVSSEEKMK 651 ++ I T +S L + G IV+ + + AN R+ G L + E+++ Sbjct: 592 DESIQTVINVESDRSDDAYLFFTTRHG---IVKRTSVKEFANIRQNGLKALNLKDEDELI 648 Query: 652 LVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSR-GKGVRLQSYKDG 695 V+ GD ++G + F+ + MSR GV+ + ++G Sbjct: 649 NVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMSRIATGVKGVNLREG 694 >gi|113461306|ref|YP_719375.1| DNA gyrase subunit A [Haemophilus somnus 129PT] gi|170717841|ref|YP_001784900.1| DNA gyrase subunit A [Haemophilus somnus 2336] gi|112823349|gb|ABI25438.1| DNA gyrase subunit A [Haemophilus somnus 129PT] gi|168825970|gb|ACA31341.1| DNA gyrase, A subunit [Haemophilus somnus 2336] Length = 881 Score = 419 bits (1076), Expect = e-114, Method: Compositional matrix adjust. Identities = 251/662 (37%), Positives = 380/662 (57%), Gaps = 73/662 (11%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 NV VS+ L+ YL YA+S I RA+PD+RDG KPVHRR++ +M + + A+ KS Sbjct: 7 NVTPVSIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQSSNTYNKAYVKS 66 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 AR+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG++DGD+ AA RYTE R Sbjct: 67 ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDAPAAMRYTEVR 126 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 M ++ + +L +D++ VDF Y+ ++ P V P+K P LL NG+SGIAVGMAT+IP HN Sbjct: 127 MQKITQELLTDLDKETVDFSPNYDGKEMIPDVLPTKIPTLLVNGSSGIAVGMATNIPPHN 186 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 + E+ + LA +DN EISI++L++YI GPDFPT +I R+ I E+Y+ GRG VRA+ Sbjct: 187 LNEVLDGCLAYVDNEEISIDELMQYIPGPDFPTAALI-NGRKGIEEAYKTGRGKIYVRAK 245 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315 +E +G IVVTEIPYQV K++L+EKIAEL+ K+I + ++RD S ++ V Sbjct: 246 AEIETNDKGRETIVVTEIPYQVNKAKLVEKIAELVREKKIEGISNVRDVSNKEGNRVEVE 305 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 R ++++ +++ L+ M+ F +NM L G+ P+++ L I++ ++ HRREV+ RR Sbjct: 306 VKRDAVGEVVLNNLYALTQMQVTFGINMVALDHGQ-PKLLNLKQIIEAFVRHRREVITRR 364 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE------------------------- 410 + F ++ R IL+GL IA NID +I +IR Sbjct: 365 TVFELRKARERAHILEGLAIALANIDPVIELIRASKTADEARVGLLSQAWELGNVATMLS 424 Query: 411 ----DKPKP--------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458 D +P ++ ++ L++ Q AIL+LRL+ L LE +I +E +L E Sbjct: 425 ATGVDSSRPDNLADNLGIIDGKYYLSDEQARAILDLRLQRLTGLEHEKIVTEYQEILIEI 484 Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518 K+ +LNS + + E+ +VKE F + RRT E++ A + +I +E Sbjct: 485 GKLLHILNSADRLKEVLCEELEKVKEEFGDA-----RRT---EITSASGDINLEDLITQE 536 Query: 519 PITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570 + V +S+ G+++ + + SA K+ D ++ L A+T D IL S+ G Sbjct: 537 DVIVTLSHAGYVKYQPLTDYEAQRRGGKGKSATKMKDEDFIERLLVANTHDTILCFSSRG 596 Query: 571 -----KAYTLPAGNLLSGRG-HGEAIQLLIDLNHNQDI-----VTAFVYDSTCKLLVVSS 619 K Y LP N RG G I ++ L N+ I V A+ D K +V+++ Sbjct: 597 RLYWLKVYQLPQAN----RGARGRPIVNILPLQENERITAILPVAAYEED---KFIVMAT 649 Query: 620 KG 621 G Sbjct: 650 AG 651 >gi|296103860|ref|YP_003614006.1| DNA gyrase subunit A [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295058319|gb|ADF63057.1| DNA gyrase subunit A [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 878 Score = 418 bits (1075), Expect = e-114, Method: Compositional matrix adjust. Identities = 276/747 (36%), Positives = 412/747 (55%), Gaps = 69/747 (9%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + V++ L+ YL YA+S I RA+PD+RDG KPVHRR+++AM+ +G D+ A+KKSA Sbjct: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG+IDGDSAAA RYTE R+ Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 ++A ++ ++++ VDF D Y+ + P V P+K PNLL NG+SGIAVGMAT+IP HN+ Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNI 187 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ LA ID+ +ISIE L+E+I GPDFPT II R I E+YR GRG +RAR Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAII-NGRRGIEEAYRTGRGKIYIRARA 246 Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314 VE + G I+V EIPYQV K+RLIEKIAEL+ KR+ + +RDES +D +RIV+ Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K ++ ++++ +++ + ++ F +NM L G+ P++M L IL ++ HRREV+ R Sbjct: 307 IKRDAVG-EVVLNNLYSQTQLQVSFGINMVALHHGQ-PKIMNLKEILSAFVRHRREVVTR 364 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----------- 420 R+ F ++ R IL+ L +A NID II +IR P K ++SR Sbjct: 365 RTIFELRKARDRAHILEALAVALANIDPIIELIRRAPTPAEAKTALISRPWDLGNVAAML 424 Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457 + LTE Q AIL+LRL+ L LE ++ E LL + Sbjct: 425 ERAGDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQ 484 Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517 ++ +L S ++ I E+ +++ F G R T + AD + +I + Sbjct: 485 IAELLHILGSAERLMEVIREELELIRDQF------GDERRTEITANSADINI--EDLINQ 536 Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569 E + V +S++G+++ + + SA KE D + L A+T D IL S+ Sbjct: 537 EDVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSR 596 Query: 570 GKAYTLPAGNLL-SGRG-HGEAIQLLIDLNHNQDIVTAFV----YDSTCKLLVVSSKGNA 623 G+ Y + L + RG G I L+ L N+ I TA + Y+ + + ++ G Sbjct: 597 GRLYWMKVYQLPEASRGARGRPIVNLLPLEANERI-TAILPVREYEEGVNVFMATASGTV 655 Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMS 682 +E G + ++ +++ V +G D V + K++ F D + M Sbjct: 656 KKTALTEFSRPRSAGIIAVNLNEGDELIGVDLTSGKDEVMLFSAAGKVVRFKEDAVRAMG 715 Query: 683 R-GKGVRLQSYKDGGISDVICFKICEG 708 R GVR K G V+ I G Sbjct: 716 RTATGVR--GIKLAGEDSVVSLIIPRG 740 >gi|29141106|ref|NP_804448.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|29136732|gb|AAO68297.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 878 Score = 418 bits (1075), Expect = e-114, Method: Compositional matrix adjust. Identities = 277/747 (37%), Positives = 411/747 (55%), Gaps = 69/747 (9%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + V++ L+ YL YA+S I RA+PD+RDG KPVHRR+++AM+ +G D+ A+KKSA Sbjct: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG+IDGDSAAA RYTE R+ Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 ++A ++ ++++ VDF D Y+ + P V P+K PNLL NG+SGIAVGMAT+IP HN+ Sbjct: 128 AKIAHGLMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ LA IDN +ISIE L+E+I GPDFPT II R I E+YR GRG +RAR Sbjct: 188 TEVINGCLAYIDNEDISIEGLMEHIPGPDFPTAAII-NGRRGIEEAYRTGRGKVYIRARA 246 Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314 VE + G I+V EIPYQV K+RLIEKIAEL+ KR+ + +RDES +D +RIV+ Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKDGMRIVIE 306 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K ++ ++++ +++ + ++ F +NM L G+ P++M L I+ ++ HRREV+ R Sbjct: 307 VKRDAVG-EVVLNNLYSQTQLQVSFGINMVALHHGQ-PKIMNLKDIISAFVRHRREVVTR 364 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----------- 420 R+ F ++ R IL+ L IA NID II +IR P K ++SR Sbjct: 365 RTIFELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAALISRPWDLGNVAAML 424 Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457 + LTE Q AIL+LRL+ L LE ++ E LL + Sbjct: 425 ERAGDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQ 484 Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517 ++ +L S + I E+ +++ F G R T + AD + +I + Sbjct: 485 IAELLHILGSADRLMEVIREEMELIRDQF------GDERRTEITANSADINI--EDLISQ 536 Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569 E + V +S++G+++ + + SA KE D + L A+T D IL S+ Sbjct: 537 ENVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSR 596 Query: 570 GKAYTLPAGNLL-SGRG-HGEAIQLLIDLNHNQDIVTAFV----YDSTCKLLVVSSKGNA 623 G+ Y + L + RG G I L+ L N+ I TA + Y+ + + ++ G Sbjct: 597 GRLYWMKVYQLPEASRGARGRPIVNLLPLEANERI-TAILPVREYEEGVNVFMATASGTV 655 Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMS 682 +E G + ++ +++ V +G D V + K++ F D + M Sbjct: 656 KKTALTEFSRPRSAGIIAVNLNDGDELIGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAMG 715 Query: 683 R-GKGVRLQSYKDGGISDVICFKICEG 708 R GVR K G V+ I G Sbjct: 716 RTATGVR--GIKLAGDDKVVSLIIPRG 740 >gi|161502573|ref|YP_001569685.1| DNA gyrase subunit A [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160863920|gb|ABX20543.1| hypothetical protein SARI_00617 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 878 Score = 418 bits (1075), Expect = e-114, Method: Compositional matrix adjust. Identities = 277/747 (37%), Positives = 411/747 (55%), Gaps = 69/747 (9%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + V++ L+ YL YA+S I RA+PD+RDG KPVHRR+++AM+ +G D+ A+KKSA Sbjct: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG+IDGDSAAA RYTE R+ Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 ++A ++ ++++ VDF D Y+ + P V P+K PNLL NG+SGIAVGMAT+IP HN+ Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ LA IDN +ISIE L+E+I GPDFPT II R I E+YR GRG +RAR Sbjct: 188 TEVINGCLAYIDNEDISIEGLMEHIPGPDFPTAAII-NGRRGIEEAYRTGRGKVYIRARA 246 Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314 VE + G I+V EIPYQV K+RLIEKIAEL+ KR+ + +RDES +D +RIV+ Sbjct: 247 EVETDAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKDGMRIVIE 306 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K ++ ++++ +++ + ++ F +NM L G+ P++M L I+ ++ HRREV+ R Sbjct: 307 VKRDAVG-EVVLNNLYSQTQLQVSFGINMVALHHGQ-PKIMNLKDIISAFVRHRREVVTR 364 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----------- 420 R+ F ++ R IL+ L IA NID II +IR P K ++SR Sbjct: 365 RTIFELRKARDRAHILEALAIALANIDPIIEMIRRAPTPAEAKAALISRPWDLGNVAAML 424 Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457 + LTE Q AIL+LRL+ L LE ++ E LL + Sbjct: 425 ERAGDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQ 484 Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517 ++ +L S + I E+ +++ F G R T + AD + +I + Sbjct: 485 IAELLHILGSADRLMEVIREEMELIRDQF------GDERRTEITANSADINI--EDLISQ 536 Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569 E + V +S++G+++ + + SA KE D + L A+T D IL S+ Sbjct: 537 EDVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSR 596 Query: 570 GKAYTLPAGNLL-SGRG-HGEAIQLLIDLNHNQDIVTAFV----YDSTCKLLVVSSKGNA 623 G+ Y + L + RG G I L+ L N+ I TA + Y+ + + ++ G Sbjct: 597 GRLYWMKVYQLPEASRGARGRPIVNLLPLEANERI-TAILPVREYEEGVNVFMATASGTV 655 Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMS 682 +E G + ++ +++ V +G D V + K++ F D + M Sbjct: 656 KKTALTEFSRPRSAGIIAVNLNEGDELIGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAMG 715 Query: 683 R-GKGVRLQSYKDGGISDVICFKICEG 708 R GVR K G V+ I G Sbjct: 716 RTATGVR--GIKLAGDDKVVSLIIPRG 740 >gi|285018500|ref|YP_003376211.1| DNA gyrase, subunit a protein [Xanthomonas albilineans GPE PC73] gi|283473718|emb|CBA16221.1| probable dna gyrase, subunit a protein [Xanthomonas albilineans] Length = 935 Score = 418 bits (1075), Expect = e-114, Method: Compositional matrix adjust. Identities = 278/729 (38%), Positives = 399/729 (54%), Gaps = 93/729 (12%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 V+L + + YL YA+S I RA+PD RDG KPVHRR++ AM+E+G + KSARIV Sbjct: 11 VNLEDEMRKSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMNELGAHSNKPYYKSARIV 70 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGDQSVYD+LVR+AQPF RY L+ GQGNFG++DGDSAAA RYTEARM+++ Sbjct: 71 GDVIGKYHPHGDQSVYDTLVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEARMSRL 130 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 ++ +D++ VDF+ Y+E++ EP V P++FPNLL NG++GIAVGMAT+IP HN+ E Sbjct: 131 THELIADIDKETVDFQPNYDEKEQEPSVMPTRFPNLLVNGSAGIAVGMATNIPPHNLTES 190 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 A +ALIDNP+I ++ L+EYI GPDFPT GI V I+ YR GRG R+RAR +E Sbjct: 191 INACIALIDNPQIDVDGLMEYIPGPDFPTAGI-VNGTAGIIAGYRTGRGRVRMRARAEIE 249 Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319 G IVVTEIPYQV K+RLIEKIAEL+ K++ + ++RDES +D + R Sbjct: 250 IQDNGREAIVVTEIPYQVNKARLIEKIAELVKEKKLEGISELRDESDKDGMRIYIEVKRG 309 Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379 D+++ +++ + ME+ F +NM L GR PQ++ L +L+ ++ HRREV+ RR+ F Sbjct: 310 EAADVVLNNLYQQTQMESVFGINMVALVDGR-PQLLNLKQMLEAFVRHRREVVTRRTIFE 368 Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP------------KPVMV--------- 418 ++ R IL+GL +A NIDE+I +I+ P +P +V Sbjct: 369 LRKARARAHILEGLTVALANIDEMIELIKTSANPTEARERMLAKTWQPGLVGALLSAAGA 428 Query: 419 --SR--------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKID 462 SR + LTE Q IL +RL L LE+ ++ E LL E I Sbjct: 429 EASRPDDLPSGVGLGAGGYQLTEVQATQILEMRLHRLTGLEQERLTEEYKQLL---EAIS 485 Query: 463 SLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITV 522 L+ + + + IRE E+ S + G R T S D L +I E + V Sbjct: 486 GLIRI-LENPDVLLEVIRE--ELVSIREEYGDARRTEIRHSEEDLDILD--LIAPEDVVV 540 Query: 523 VISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT 574 +S+ G+ + + + SA KE D + +T D +L ++ GK + Sbjct: 541 TLSHAGYAKRQPVSAYRAQRRGGRGRSAAATKEEDFIDHLWLVNTHDTLLTFTSSGKVFW 600 Query: 575 LP------AGNLLSGRG--------HGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSK 620 LP AG GR GE +Q ++ + D +V+ +T K +V + Sbjct: 601 LPVYQLPEAGPNARGRPVINWIPLEQGERVQAVLPVREYAD--GHYVFFATRKGMVKKTP 658 Query: 621 GNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPE 680 SE ++GK + ++ +E LV VA+ R +L+F+ Sbjct: 659 -------LSEFAYQLKRGK--VAINLDEGDALV------DVALTDGERDVLLFA------ 697 Query: 681 MSRGKGVRL 689 S GK VR Sbjct: 698 -SNGKTVRF 705 >gi|317486104|ref|ZP_07944952.1| DNA gyrase, A subunit [Bilophila wadsworthia 3_1_6] gi|316922653|gb|EFV43891.1| DNA gyrase, A subunit [Bilophila wadsworthia 3_1_6] Length = 812 Score = 418 bits (1075), Expect = e-114, Method: Compositional matrix adjust. Identities = 268/763 (35%), Positives = 432/763 (56%), Gaps = 49/763 (6%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 V++ + + YL Y+LS I RAIPD+RDG KPVHRRI+ A E+ + KK ARIV Sbjct: 5 VNIEHEMRKSYLEYSLSVIIGRAIPDVRDGLKPVHRRILFAQQELANSYNRPPKKCARIV 64 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGD +VY++LVRLAQ F R PL GQGNFG+IDGD+AAA RYTE RM+++ Sbjct: 65 GDVIGKYHPHGDSAVYNALVRLAQDFSMRDPLEDGQGNFGSIDGDAAAAMRYTEVRMSRL 124 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A L +D++ VDFR Y+ +EPVV P+K PNLL NG+SGIAVGMAT+IP HN+ E+ Sbjct: 125 ASEFLNDIDKETVDFRPNYDNTLAEPVVLPTKVPNLLLNGSSGIAVGMATNIPPHNLSEL 184 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 +A L LID PE S+E L++ + GPDFPTGG V + + + ++Y GRG +VR + +E Sbjct: 185 SDALLMLIDAPESSVEDLMDVVQGPDFPTGG-YVYAGQGLYDAYTTGRGTVKVRGKVEIE 243 Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFPKNR 318 + +G +++ EIP+ + KS L+EKIA LI ++I + D+RDES +R+V+ K Sbjct: 244 DRKKGFQSLIIREIPFGLNKSSLVEKIAALINDRKIDGVSDLRDESDRRGIRVVIELKRG 303 Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378 ++ P++++ S++ + +ET F +NM + R P ++ L L +L HRREV+ RR+ F Sbjct: 304 TM-PEIVINSLYKYTPLETSFGINMLAVVDNR-PVLLNLKTALAYFLDHRREVVVRRTKF 361 Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVDAILNLR 435 ++ + R IL+GLL A +IDE++++IR+ P K ++ RF L+E Q AIL++R Sbjct: 362 ELRKAEARAHILEGLLKALDHIDEVVSLIRSSATPPEAKERLMQRFELSEVQAQAILDMR 421 Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495 L+ L LE +I+ EL +LL++ S+L W I E+ +K+ +S R Sbjct: 422 LQRLTGLERGKIEEELRDLLSKIAWYQSILGDASVLWGVIRDEVEYIKQTYSTP-----R 476 Query: 496 RTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSL--------KSHSVDLSALHFK 546 RT EV R + + + ++ + + + +S RG+I+ + ++ +H Sbjct: 477 RT---EVIREALSNIDIEDLLPDDDVVITLSRRGYIKRTSLGIYQQQRRGGKGVAGVHTG 533 Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL--LIDLNHNQ---D 601 E D ++ + +L+ + G+ + L + G + + + L+ + ++ Sbjct: 534 EDDFVQEFITTTNHQFLLMFTNKGRMHQLKVHQVPEGSRTAKGVHIANLVPMEKDEWVNT 593 Query: 602 IVTAFVYDSTCKLLVVSSKGNAFIVEESE--IIANTRKGKTF-LKVSSEEKMKLVVKVTG 658 I+T + L + +G +V+ S + A +RKG + + ++++ +V ++T Sbjct: 594 ILTVREFAEDKSFLFATRRG---MVKRSSAALYARSRKGGLIAVGLREDDELIMVREITD 650 Query: 659 DHVAVVGENRKLLI-FSIDQIPEMSRG----KGVRLQSYKDGGISDVICFKICE---GLT 710 D V+ + I FS + M RG KG+ L+ G + V C + E + Sbjct: 651 DDFVVLATADGIAIRFSCRDVRNMGRGATGVKGIALRH----GDTVVACLVLKEDSPAIM 706 Query: 711 WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753 I + G + + N L + RGG G + K P++G + + Sbjct: 707 TISALG--FGKRTNVDLYRVQSRGGKGIINFKVTPKTGPVIGA 747 >gi|168491140|ref|ZP_02715283.1| DNA gyrase, A subunit [Streptococcus pneumoniae CDC0288-04] gi|73916126|gb|AAZ92931.1| DNA gyrase subunit A [Streptococcus pneumoniae] gi|73916144|gb|AAZ92940.1| DNA gyrase subunit A [Streptococcus pneumoniae] gi|183574384|gb|EDT94912.1| DNA gyrase, A subunit [Streptococcus pneumoniae CDC0288-04] Length = 822 Score = 418 bits (1075), Expect = e-114, Method: Compositional matrix adjust. Identities = 257/706 (36%), Positives = 414/706 (58%), Gaps = 38/706 (5%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 ++N+ V+L ++ ++ YA+S I RA+PD+RDG KPVHRRI++ M+E+G+ K Sbjct: 3 DKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHK 62 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSARI G+V+GK HPHGD S+Y+++VR+AQ + RY L+ G GNFG++DGDSAAA RYTE Sbjct: 63 KSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYTE 122 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 ARM+++A +L+ ++++ VDF D Y+ + EP+V P++FPNLL NG +GIAVGMAT+IP Sbjct: 123 ARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIPP 182 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E +A ++DNPE++ + L+E + GPDFPTG +++ + I ++Y G+G +R Sbjct: 183 HNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVM-GKSGIHKAYETGKGSIVLR 241 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312 +R +E G IVVTE PY V K+++ E I L+ KRI + +RDES E VR V Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 + K R ++++ ++F ++ M+T F NM + G +P+++ L IL ++ H++EV+ Sbjct: 302 IEVK-RDASANVILNNLFKMTQMQTNFGFNMLAIQNG-IPKILSLRQILDAYIEHQKEVV 359 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVD 429 RR+ F + + R IL+GLLIA +IDE+I IIR + + + ++S+F L+E Q Sbjct: 360 VRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSKFKLSERQSQ 419 Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489 AIL++RLR L LE +I+SE D+LLA + +L ++ I E+ EVK FS Sbjct: 420 AILDMRLRRLTGLERDKIQSEYDDLLALIADLADILAKPERVSQIIKDELDEVKRKFSD- 478 Query: 490 TDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSL--------KSHSVDL 540 +RRT E+ +L+ + +IE+ + + +SNRG+I+ L K + Sbjct: 479 ----KRRT---ELMVGQVLSLEDEDLIEESDVLITLSNRGYIKRLDQDEFTAQKRGGRGV 531 Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS-GR-GHGEAIQLLIDLNH 598 K+ D ++ + T D +L + G+ Y L + GR G + L+ L+ Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDE 591 Query: 599 NQDIVTAFVYDS----TCKLLVVSSKGNAFIVEESEI--IANTRK-GKTFLKVSSEEKMK 651 ++ I T +S L + G IV+ + + AN R+ G L + E+++ Sbjct: 592 DESIQTVINVESDRSDDAYLFFTTRHG---IVKRTSVKEFANIRQNGLKALNLKDEDELI 648 Query: 652 LVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSR-GKGVRLQSYKDG 695 V+ GD ++G + F+ + MSR GV+ + ++G Sbjct: 649 NVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMSRIATGVKGVNLREG 694 >gi|73916182|gb|AAZ92959.1| DNA gyrase subunit A [Streptococcus pneumoniae] Length = 822 Score = 418 bits (1075), Expect = e-114, Method: Compositional matrix adjust. Identities = 257/706 (36%), Positives = 415/706 (58%), Gaps = 38/706 (5%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 ++N+ V+L ++ ++ YA+S I RA+PD+RDG KPVHRRI++ M+E+G+ K Sbjct: 3 DKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHK 62 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSARI G+V+GK HPHGD S+Y+++VR+AQ + RY L+ G GNFG++DGDSAAA RYTE Sbjct: 63 KSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYTE 122 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 ARM+++A +L+ ++++ VDF D Y+ + EP+V P++FPNLL NG +GIAVGMAT+IP Sbjct: 123 ARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIPP 182 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E +A ++DNPE++ + L+E + GPDFPTG +++ + I ++Y G+G +R Sbjct: 183 HNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVM-GKSGIHKAYETGKGSIVLR 241 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312 +R +E G IVVTE PY V K+++ E I L+ KRI + +RDES E VR V Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 + K R ++++ ++F ++ M+T F NM + G +P+++ L IL ++ H++EV+ Sbjct: 302 IEVK-RDASANVILNNLFKMTQMQTNFGFNMLAIQNG-IPKILSLRQILDAYIEHQKEVV 359 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVD 429 RR+ F + + R IL+GLLIA +IDE+I IIR + + + ++S+F L+E Q Sbjct: 360 VRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSKFKLSERQSQ 419 Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489 AIL++RLR L LE +I+SE D+LLA + +L ++ I E+ EVK FS Sbjct: 420 AILDMRLRRLTGLERDKIQSEYDDLLALIADLADILAKPERVSQIIKDELDEVKRKFSD- 478 Query: 490 TDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSL--------KSHSVDL 540 +RRT E+ +L+ + +IE+ + + +SNRG+I+ L K + Sbjct: 479 ----KRRT---ELMVGQILSLEDEDLIEESDVLITLSNRGYIKRLDQDEFTAQKRGGRGV 531 Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS-GR-GHGEAIQLLIDLNH 598 K+ D ++ + T D +L + G+ Y L + GR G + L+ L+ Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDE 591 Query: 599 NQDIVTAFVYDS----TCKLLVVSSKGNAFIVEESEI--IANTRK-GKTFLKVSSEEKMK 651 +++I T +S L + G IV+ + + AN R+ G L + E+++ Sbjct: 592 DENIQTVINVESDRSDDAYLFFTTRHG---IVKRTSVKEFANIRQNGLKALNLKDEDELI 648 Query: 652 LVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSR-GKGVRLQSYKDG 695 V+ GD ++G + F+ + MSR GV+ + ++G Sbjct: 649 NVLLTEGDMDIIIGTKFGYAVRFNQSAVRGMSRIATGVKGVNLREG 694 >gi|320355371|ref|YP_004196710.1| DNA gyrase subunit A [Desulfobulbus propionicus DSM 2032] gi|320123873|gb|ADW19419.1| DNA gyrase subunit A [Desulfobulbus propionicus DSM 2032] Length = 829 Score = 418 bits (1075), Expect = e-114, Method: Compositional matrix adjust. Identities = 248/665 (37%), Positives = 381/665 (57%), Gaps = 39/665 (5%) Query: 19 AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78 +++ L + YL YA+S I RA+PD+RDG KPVHRR + AM E+G + + KSARI Sbjct: 13 TIAISRELRKSYLDYAMSVIIGRALPDVRDGLKPVHRRTLFAMRELGNTYNRPYIKSARI 72 Query: 79 VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138 VG+VIGK HPHGD + YD+LVR+AQ F RYPL+ GQGNFG++DGDSAAA RYTEARMT+ Sbjct: 73 VGDVIGKYHPHGDTAAYDTLVRMAQDFSMRYPLVDGQGNFGSMDGDSAAAMRYTEARMTR 132 Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198 + + ++ +D++ VDF Y+ EP V PS+ PN+L NG+ GIAVGMAT IP HN+ E Sbjct: 133 LDQELVADLDKETVDFVPNYDNSLQEPAVLPSRIPNILINGSEGIAVGMATKIPPHNLTE 192 Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258 + +AL+DNPEI++ +L+E I GPDFPTGG I R I E+Y GRG +R++ + Sbjct: 193 VINGLIALVDNPEITVHQLMEIITGPDFPTGGFIC-GRAGIREAYETGRGVIVMRSKTHI 251 Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFPKN 317 E+ G IV+TEIP+Q K+ L+EKIA L+ KRI + +IRDES VR+VL + Sbjct: 252 EQRGSHGEAIVITEIPFQQNKAALVEKIALLMKEKRITSIAEIRDESDRHGVRVVLDLRK 311 Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377 + PD+++ ++ ++ ++ F + + + + P+++ L IL+ +LAHR+ V++RR++ Sbjct: 312 DEI-PDIVINQLYKMTPLQKSFGIILLCIVNNK-PEILNLKQILQHFLAHRKTVVYRRTA 369 Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVDAILNL 434 F ++ + R IL+GL IA ++DE++ +IR P K ++ RF L+E Q IL++ Sbjct: 370 FELRKAEERAHILEGLKIAITHLDEVVELIRGSANPAEAKEGLILRFELSEIQAQTILDM 429 Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494 RL+ L LE +I S+ + + A+ + +L I E +++E + Sbjct: 430 RLQRLTGLERDKIISDYNEIQAKISWLKQVLADDNLVVQIIREEFEKIREEYGDD----- 484 Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFK 546 RRT E+ A L + +I E + V +S+ G+I R+ + + + Sbjct: 485 RRT---EIIDAPDEILPEDLITPEEMVVTVSHTGYIKRNPLTLYRAQRRGGKGVKGMVTL 541 Query: 547 EGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGR-GHGEAIQLLIDLNHNQ 600 E D + A + D L + G K Y LP L+GR G+AI L++L ++ Sbjct: 542 EDDFVTSLYTASSLDTFLFFTNKGRVFWRKVYELP----LAGRTARGKAIVNLLELGEDE 597 Query: 601 DIVTAFV------YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654 + D T +L V+ +G SE RKGK L + ++++ Sbjct: 598 KVAAILPVADLANMDDTVSVLTVTKQGRVKKTFISEYKRPLRKGKFGLTIRDDDEILSAA 657 Query: 655 KVTGD 659 +GD Sbjct: 658 ITSGD 662 >gi|303258855|ref|ZP_07344834.1| DNA gyrase subunit A [Streptococcus pneumoniae SP-BS293] gi|303261539|ref|ZP_07347486.1| DNA gyrase subunit A [Streptococcus pneumoniae SP14-BS292] gi|303264209|ref|ZP_07350129.1| DNA gyrase subunit A [Streptococcus pneumoniae BS397] gi|303266160|ref|ZP_07352053.1| DNA gyrase subunit A [Streptococcus pneumoniae BS457] gi|303268113|ref|ZP_07353913.1| DNA gyrase subunit A [Streptococcus pneumoniae BS458] gi|302637119|gb|EFL67607.1| DNA gyrase subunit A [Streptococcus pneumoniae SP14-BS292] gi|302639798|gb|EFL70254.1| DNA gyrase subunit A [Streptococcus pneumoniae SP-BS293] gi|302642330|gb|EFL72677.1| DNA gyrase subunit A [Streptococcus pneumoniae BS458] gi|302644330|gb|EFL74584.1| DNA gyrase subunit A [Streptococcus pneumoniae BS457] gi|302646021|gb|EFL76248.1| DNA gyrase subunit A [Streptococcus pneumoniae BS397] Length = 822 Score = 418 bits (1075), Expect = e-114, Method: Compositional matrix adjust. Identities = 257/706 (36%), Positives = 414/706 (58%), Gaps = 38/706 (5%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 ++N+ V+L ++ ++ YA+S I RA+PD+RDG KPVHRRI++ M+E+G+ K Sbjct: 3 DKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHK 62 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSARI G+V+GK HPHGD S+Y+++VR+AQ + RY L+ G GNFG++DGDSAAA RYTE Sbjct: 63 KSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYTE 122 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 ARM+++A +L+ ++++ VDF D Y+ + EP+V P++FPNLL NG +GIAVGMAT+IP Sbjct: 123 ARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIPP 182 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E +A ++DNPE++ + L+E + GPDFPTG +++ + I ++Y G+G +R Sbjct: 183 HNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVM-GKSGIHKAYETGKGSIVLR 241 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312 +R +E G IVVTE PY V K+++ E I L+ KRI + +RDES E VR V Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 + K R ++++ ++F ++ M+T F NM + G +P+++ L IL ++ H++EV+ Sbjct: 302 IEVK-RDASANVILNNLFKMTQMQTNFGFNMLAIQNG-IPKILSLRQILDTYIEHQKEVV 359 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVD 429 RR+ F + + R IL+GLLIA +IDE+I IIR + + + ++S+F L+E Q Sbjct: 360 VRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSKFKLSERQSQ 419 Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489 AIL++RLR L LE +I+SE D+LLA + +L ++ I E+ EVK FS Sbjct: 420 AILDMRLRRLTGLERDKIQSEYDDLLALIADLADILAKPERVSQIIKDELDEVKRKFSD- 478 Query: 490 TDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSL--------KSHSVDL 540 +RRT E+ +L+ + +IE+ + + +SNRG+I+ L K + Sbjct: 479 ----KRRT---ELMVGQILSLEDEDLIEESDVLITLSNRGYIKRLDQDEFTAQKRGGRGV 531 Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS-GR-GHGEAIQLLIDLNH 598 K+ D ++ + T D +L + G+ Y L + GR G + L+ L+ Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDE 591 Query: 599 NQDIVTAFVYDS----TCKLLVVSSKGNAFIVEESEI--IANTRK-GKTFLKVSSEEKMK 651 ++ I T +S L + G IV+ + + AN R+ G L + E+++ Sbjct: 592 DESIQTVINVESDRSDDAYLFFTTRHG---IVKRTSVKEFANIRQNGLKALNLKDEDELI 648 Query: 652 LVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSR-GKGVRLQSYKDG 695 V+ GD ++G + F+ + MSR GV+ + ++G Sbjct: 649 NVLLTEGDMDIIIGTKFGYAVRFNQSAVRGMSRIATGVKGVNLREG 694 >gi|307704847|ref|ZP_07641740.1| DNA gyrase, A subunit [Streptococcus mitis SK597] gi|307621597|gb|EFO00641.1| DNA gyrase, A subunit [Streptococcus mitis SK597] Length = 822 Score = 418 bits (1075), Expect = e-114, Method: Compositional matrix adjust. Identities = 237/611 (38%), Positives = 372/611 (60%), Gaps = 40/611 (6%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 + N+ V+L ++ ++ YA+S I RA+PD+RDG KPVHRRI++ M+E+G+ K Sbjct: 3 DRNLVNVNLTKEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHK 62 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSARI G+V+GK HPHGD S+Y+++VR+AQ + RY L+ G GNFG++DGD AAA RYTE Sbjct: 63 KSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYTE 122 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 ARM+++A +L+ ++++ VDF D Y+ + EP+V P++FPNLL NG +GIAVGMAT+IP Sbjct: 123 ARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIPP 182 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E +A ++DNPE++ + L+E + GPDFPTG +++ + I ++Y G+G +R Sbjct: 183 HNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVM-GKSGIHKAYETGKGSIVLR 241 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312 +R +EE G IVVTE PY V K+++ E I L+ KRI + +RDES E VR V Sbjct: 242 SRTEIEETKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 + K R ++++ ++F ++ M+T F NM + G VP+++ L IL ++ H++EV+ Sbjct: 302 IEVK-RDASANVILNNLFKMTQMQTNFGFNMLAIQNG-VPKILSLRQILDAYIEHQKEVV 359 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVD 429 RR+ F + + R IL+GLLIA +IDE+I IIR + + + ++S+F L+E Q Sbjct: 360 VRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSKFKLSERQSQ 419 Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489 AIL++RLR L LE +I+SE D+LLA + +L ++ I E+ EVK FS Sbjct: 420 AILDMRLRRLTGLERDKIQSEYDDLLALIADLADILAKPERVSQIIKDELDEVKRKFSD- 478 Query: 490 TDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSL--------KSHSVDL 540 +RRT E+ + +L+ + +IE+ + + +SN+G+I+ L K + Sbjct: 479 ----KRRT---ELMVGEVLSLEDEDLIEESDVLITLSNKGYIKRLDQAEFTAQKRGGRGV 531 Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLLSGRG 585 K+ D ++ + T D +L + G+ Y LP NLL Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLK-LD 590 Query: 586 HGEAIQLLIDL 596 GE+IQ +I++ Sbjct: 591 EGESIQTIINV 601 >gi|299820836|ref|ZP_07052725.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Listeria grayi DSM 20601] gi|299817857|gb|EFI85092.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Listeria grayi DSM 20601] Length = 840 Score = 418 bits (1075), Expect = e-114, Method: Compositional matrix adjust. Identities = 228/571 (39%), Positives = 357/571 (62%), Gaps = 22/571 (3%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 + V ++L + +L YA+S I RA+PD+RDG KPVHRRI++AM+++G+ A+KK Sbjct: 7 DRVTEINLNKEMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYAMNDLGMTSDKAYKK 66 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 SARIVGEVIGK HPHGD +VY ++VR+AQ F R L+ G GNFG++DGD AAA RYTEA Sbjct: 67 SARIVGEVIGKYHPHGDSAVYFTMVRMAQHFSYRNMLVDGHGNFGSVDGDMAAAMRYTEA 126 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 RM+++A +L+ +++D +D+ D Y+ + EPV+ P++FPNLL NG+SGIAVGMAT+IP+H Sbjct: 127 RMSKIAMELLRDINKDTIDYADNYDGSEKEPVILPARFPNLLVNGSSGIAVGMATNIPTH 186 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 ++ E+ + LAL +PEI I +L+EYI GPDFPT G+I+ R I +Y GRG VRA Sbjct: 187 HLGEVIDGVLALSRDPEIEIRELMEYIPGPDFPTAGLIM-GRSGIRRAYETGRGSIVVRA 245 Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314 R +EE G I++TEIPYQV K+RLIE+IAEL K+I + DI DES ++ Sbjct: 246 RVDIEEKKNGKETIIITEIPYQVNKARLIERIAELAREKKIDGITDINDESDRSGMRIVI 305 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 R + +++ +++ ++ ++T F +NM L + P+V+ L IL +L H++ V+ R Sbjct: 306 EVRRDISASVIINNLYKMTALQTTFGINMLAL-VDNHPKVLNLKQILYHYLEHQKIVIRR 364 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAI 431 R+ F ++ + R IL+GL IA NID +IA+IR+ + K ++++F L++ Q AI Sbjct: 365 RTEFELRKAEARAHILEGLRIALDNIDAVIALIRSSNTTETAKEGLMTKFQLSDKQAQAI 424 Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491 L++RL+ L LE +I+ E NL+ + ++L ++ I E+ E+K ++ Sbjct: 425 LDMRLQRLTGLERSKIEEEYQNLMTLINDLKAVLADEERILEIIREELEEIKIKYAD--- 481 Query: 492 LGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWI--------RSLKSHSVDLSA 542 +RRT E+ D ++ + +I +E + + ++ RG+I RS + + Sbjct: 482 --KRRT---EILTGDIVNIEDEDLIPEEEVAITLTKRGYIKRLPLSTYRSQRRGGRGIQG 536 Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573 + E D ++ + A + D +L + GK Y Sbjct: 537 MSTHEDDFVEHLVAASSHDTLLFFTNTGKVY 567 >gi|317048908|ref|YP_004116556.1| DNA gyrase subunit A [Pantoea sp. At-9b] gi|316950525|gb|ADU70000.1| DNA gyrase, A subunit [Pantoea sp. At-9b] Length = 879 Score = 418 bits (1075), Expect = e-114, Method: Compositional matrix adjust. Identities = 253/638 (39%), Positives = 372/638 (58%), Gaps = 62/638 (9%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + V++ L+ YL YA+S I RA+PD+RDG KPVHRR++ AMSE+G D+ +KKSA Sbjct: 8 ITPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELGNDWNKPYKKSA 67 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG+IDGDSAAA RYTE RM Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVRM 127 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 ++A +L ++++ VDF Y+ + P V P+K PNLL NG+SGIAVGMAT+IP HN+ Sbjct: 128 AKIAHDLLADLEKETVDFVPNYDGTEQIPEVLPTKIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 +E+ LA ID+ IS+E L+E+I GPDFPT II R I E+YR GRG +RAR Sbjct: 188 REVINGCLAYIDDENISVEGLMEHIPGPDFPTAAII-NGRRGIEEAYRTGRGKIYIRARG 246 Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314 VE + G I++ E+PYQV K+RLIEKIAEL+ KR+ + +RDES +D +RIV+ Sbjct: 247 EVEADAKSGRETIIIHELPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K ++ ++++ +++ L+ ++ F +NM L G+ P++M L IL+ ++ HRREV+ R Sbjct: 307 IKRDAVG-EVVLNNLYSLTQLQVSFGINMVALHQGQ-PKIMALKEILEAFVRHRREVVTR 364 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-------------------------- 408 R+ F ++ R IL+GL I+ NID II +IR Sbjct: 365 RTIFELRKARDRAHILEGLAISLANIDPIIELIRRAPTPAEAKAGLIAQSWDLGNVAAML 424 Query: 409 ---NEDKPKP--------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457 +D +P + R+ LTE Q AIL+LRL+ L LE ++ E LL + Sbjct: 425 ERAGDDAARPEWLEAEFGIRDGRYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQ 484 Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ-QAMIE 516 ++ +L S ++ I E+ +++ F RRT A+ A + + +I Sbjct: 485 IAELLHILASAERLMEVIREELEAMRDQFGDD-----RRTEIT----ANSADINIEDLIN 535 Query: 517 KEPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568 +E + V +S++G+++ + + SA KE D + L A+T D IL S+ Sbjct: 536 QEDVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSS 595 Query: 569 DGKAYTLPAGNLL-SGRG-HGEAIQLLIDLNHNQDIVT 604 G+ Y + L + RG G I L+ L N+ I Sbjct: 596 RGRLYWMKVYQLPEASRGARGRPIVNLLPLEANERITA 633 >gi|325928151|ref|ZP_08189360.1| DNA gyrase subunit A [Xanthomonas perforans 91-118] gi|325541447|gb|EGD12980.1| DNA gyrase subunit A [Xanthomonas perforans 91-118] Length = 900 Score = 418 bits (1075), Expect = e-114, Method: Compositional matrix adjust. Identities = 263/725 (36%), Positives = 385/725 (53%), Gaps = 65/725 (8%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 V+L + + YL YA+S I RA+PD RDG KPVHRR+++AM E+G A+ KSARIV Sbjct: 11 VNLEDEMRKSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMHELGAHSNKAYFKSARIV 70 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGDQSVYD+LVR+AQPF RY ++ GQGNFG++DGDSAAA RYTE+RM+++ Sbjct: 71 GDVIGKYHPHGDQSVYDTLVRMAQPFSLRYMMVDGQGNFGSVDGDSAAAMRYTESRMSRL 130 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A ++ +D++ VDF+ Y+E++ EP V P++FP+LL NG++GIAVGMAT+IP HN+ E Sbjct: 131 AHELMADIDKETVDFQPNYDEKEQEPTVMPTRFPSLLVNGSAGIAVGMATNIPPHNLTEA 190 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 A +ALID PE+ +E L+EYI GPDFPT GII I YR GRG R+RA+ VE Sbjct: 191 INACIALIDTPELDVEGLMEYIPGPDFPTAGII-NGTAGIAAGYRTGRGRVRIRAKADVE 249 Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319 G IVVTEIPYQV K+RLIEKIAEL+ K++ + ++RDES +D + R Sbjct: 250 VADNGREAIVVTEIPYQVNKARLIEKIAELVKEKKLEGISELRDESDKDGMRIYIEVKRG 309 Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379 ++++ +++ + ME F +NM L GR PQ+M L +L+ ++ HRREV+ RR+ F Sbjct: 310 ESAEVVLNNLYQQTQMEAVFGINMVALIDGR-PQLMNLKQMLEAFIRHRREVVTRRTIFE 368 Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSR---------------- 420 ++ R +L+GL +A NIDE+I +I+ P+ M+++ Sbjct: 369 LRKARARAHVLEGLTVALANIDEMIELIKTSANPQEARERMLAKTWQPGLVGALLGAAGA 428 Query: 421 ------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKID 462 + L+E Q IL +RL L LE+ ++ E LL E + Sbjct: 429 EASKPEDLPPGVGLIQGFYQLSEVQASQILEMRLHRLTGLEQEKLTDEYKQLLGVIEGLI 488 Query: 463 SLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITV 522 +L + + E+ ++E + G R T S D L +I E + V Sbjct: 489 RILENPDVLLQVVRDELINIREEY------GDERRTEIRHSEEDLDILD--LIAPEDVVV 540 Query: 523 VISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT 574 +S+ G+ + + + SA KE D + +T D +L ++ GK + Sbjct: 541 TLSHAGYAKRQPVSAYRAQRRGGRGRSAAATKEEDFIDQLWLVNTHDTLLTFTSSGKVFW 600 Query: 575 LPAGNL--LSGRGHGEAIQLLIDLNHN---QDIVTAFVYDSTCKLLVVSSKGNAFIVEES 629 LP L G I I L Q ++ Y + + G S Sbjct: 601 LPVHQLPEAGSNARGRPIINWIPLEAGERVQAVLPVREYADNRYVFFATRNGTVKKTPLS 660 Query: 630 EIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSRG---- 684 E +GK + + + + V GD V + N K + F + M R Sbjct: 661 EFAFRLARGKIAINLDEGDALVGVALTDGDRDVLLFASNGKTVRFGESTVRSMGRTATGV 720 Query: 685 KGVRL 689 +G+RL Sbjct: 721 RGIRL 725 >gi|225856887|ref|YP_002738398.1| DNA gyrase subunit A [Streptococcus pneumoniae P1031] gi|225726307|gb|ACO22159.1| DNA gyrase, A subunit [Streptococcus pneumoniae P1031] gi|301794303|emb|CBW36728.1| DNA gyrase subunit A [Streptococcus pneumoniae INV104] Length = 822 Score = 418 bits (1075), Expect = e-114, Method: Compositional matrix adjust. Identities = 257/706 (36%), Positives = 414/706 (58%), Gaps = 38/706 (5%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 ++N+ V+L ++ ++ YA+S I RA+PD+RDG KPVHRRI++ M+E+G+ K Sbjct: 3 DKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHK 62 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSARI G+V+GK HPHGD S+Y+++VR+AQ + RY L+ G GNFG++DGDSAAA RYTE Sbjct: 63 KSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYTE 122 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 ARM+++A +L+ ++++ VDF D Y+ + EP+V P++FPNLL NG +GIAVGMAT+IP Sbjct: 123 ARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIPP 182 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E +A ++DNPE++ + L+E + GPDFPTG +++ + I ++Y G+G +R Sbjct: 183 HNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVM-GKSGIHKAYETGKGSIALR 241 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312 +R +E G IVVTE PY V K+++ E I L+ KRI + +RDES E VR V Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 + K R ++++ ++F ++ M+T F NM + G +P+++ L IL ++ H++EV+ Sbjct: 302 IEVK-RDASANVILNNLFKMTQMQTNFGFNMLAIQNG-IPKILSLRQILDAYIEHQKEVV 359 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVD 429 RR+ F + + R IL+GLLIA +IDE+I IIR + + + ++S+F L+E Q Sbjct: 360 VRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSKFKLSERQSQ 419 Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489 AIL++RLR L LE +I+SE D+LLA + +L ++ I E+ EVK FS Sbjct: 420 AILDMRLRRLTGLERDKIQSEYDDLLALIADLADILAKPERVSQIIKDELDEVKRKFSD- 478 Query: 490 TDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSL--------KSHSVDL 540 +RRT E+ +L+ + +IE+ + + +SNRG+I+ L K + Sbjct: 479 ----KRRT---ELMIGQVLSLEDEDLIEESDVLITLSNRGYIKRLDQDEFTAQKRGGRGV 531 Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS-GR-GHGEAIQLLIDLNH 598 K+ D ++ + T D +L + G+ Y L + GR G + L+ L+ Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDE 591 Query: 599 NQDIVTAFVYDS----TCKLLVVSSKGNAFIVEESEI--IANTRK-GKTFLKVSSEEKMK 651 ++ I T +S L + G IV+ + + AN R+ G L + E+++ Sbjct: 592 DESIQTVINVESDRSDDAYLFFTTRHG---IVKRTSVKEFANIRQNGLKALNLKDEDELI 648 Query: 652 LVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSR-GKGVRLQSYKDG 695 V+ GD ++G + F+ + MSR GV+ + ++G Sbjct: 649 NVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMSRIATGVKGVNLREG 694 >gi|182684052|ref|YP_001835799.1| DNA gyrase subunit A [Streptococcus pneumoniae CGSP14] gi|182629386|gb|ACB90334.1| DNA gyrase subunit A [Streptococcus pneumoniae CGSP14] Length = 841 Score = 418 bits (1074), Expect = e-114, Method: Compositional matrix adjust. Identities = 257/706 (36%), Positives = 414/706 (58%), Gaps = 38/706 (5%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 ++N+ V+L ++ ++ YA+S I RA+PD+RDG KPVHRRI++ M+E+G+ K Sbjct: 22 DKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHK 81 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSARI G+V+GK HPHGD S+Y+++VR+AQ + RY L+ G GNFG++DGDSAAA RYTE Sbjct: 82 KSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYTE 141 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 ARM+++A +L+ ++++ VDF D Y+ + EP+V P++FPNLL NG +GIAVGMAT+IP Sbjct: 142 ARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIPP 201 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E +A ++DNPE++ + L+E + GPDFPTG +++ + I ++Y G+G +R Sbjct: 202 HNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVM-GKSGIHKAYETGKGSIVLR 260 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312 +R +E G IVVTE PY V K+++ E I L+ KRI + +RDES E VR V Sbjct: 261 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 320 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 + K R ++++ ++F ++ M+T F NM + G +P+++ L IL ++ H++EV+ Sbjct: 321 IEVK-RDASANVILNNLFKMTQMQTNFGFNMLAIQNG-IPKILSLRQILDAYIEHQKEVV 378 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVD 429 RR+ F + + R IL+GLLIA +IDE+I IIR + + + ++S+F L+E Q Sbjct: 379 VRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSKFKLSERQSQ 438 Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489 AIL++RLR L LE +I+SE D+LLA + +L ++ I E+ EVK FS Sbjct: 439 AILDMRLRRLTGLERDKIQSEYDDLLALIADLADILAKPERVSQIIKDELDEVKRKFSD- 497 Query: 490 TDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSL--------KSHSVDL 540 +RRT E+ +L+ + +IE+ + + +SNRG+I+ L K + Sbjct: 498 ----KRRT---ELMVGQILSLEDEDLIEESDVLITLSNRGYIKRLDQDEFTAQKRGGRGV 550 Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS-GR-GHGEAIQLLIDLNH 598 K+ D ++ + T D +L + G+ Y L + GR G + L+ L+ Sbjct: 551 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDE 610 Query: 599 NQDIVTAFVYDS----TCKLLVVSSKGNAFIVEESEI--IANTRK-GKTFLKVSSEEKMK 651 ++ I T +S L + G IV+ + + AN R+ G L + E+++ Sbjct: 611 DESIQTVINVESDRSDDAYLFFTTRHG---IVKRTSVKEFANIRQNGLKALNLKDEDELI 667 Query: 652 LVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSR-GKGVRLQSYKDG 695 V+ GD ++G + F+ + MSR GV+ + ++G Sbjct: 668 NVLLTEGDMDIIIGTKFGYAVRFNQSAVRGMSRIATGVKGVNLREG 713 >gi|194433361|ref|ZP_03065641.1| DNA gyrase, A subunit [Shigella dysenteriae 1012] gi|194418455|gb|EDX34544.1| DNA gyrase, A subunit [Shigella dysenteriae 1012] gi|320178796|gb|EFW53759.1| DNA gyrase subunit A [Shigella boydii ATCC 9905] gi|332093869|gb|EGI98923.1| DNA gyrase, A subunit [Shigella boydii 5216-82] gi|332096157|gb|EGJ01160.1| DNA gyrase, A subunit [Shigella dysenteriae 155-74] Length = 875 Score = 418 bits (1074), Expect = e-114, Method: Compositional matrix adjust. Identities = 257/659 (38%), Positives = 382/659 (57%), Gaps = 65/659 (9%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + V++ L+ YL YA+S I RA+PD+RDG KPVHRR+++AM+ +G D+ A+KKSA Sbjct: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG+IDGDSAAA RYTE R+ Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 ++A ++ ++++ VDF D Y+ + P V P+K PNLL NG+SGIAVGMAT+IP HN+ Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ LA ID+ +ISIE L+E+I GPDFPT II R I E+YR GRG +RAR Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAII-NGRRGIEEAYRTGRGKVYIRARA 246 Query: 257 CVEEVGR-GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314 VE G+ G I+V EIPYQV K+RLIEKIAEL+ KR+ + +RDES +D +RIV+ Sbjct: 247 EVEVDGKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K ++ ++++ +++ + ++ F +NM L G+ P++M L I+ ++ HRREV+ R Sbjct: 307 VKRDAVG-EVVLNNLYSQTQLQVSFGINMVALHHGQ-PKIMNLKDIIAAFVRHRREVVTR 364 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----------- 420 R+ F ++ R IL+ L +A NID II +IR+ P K +V+ Sbjct: 365 RTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAML 424 Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457 + LTE Q AIL+LRL+ L LE ++ E LL + Sbjct: 425 ERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQ 484 Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517 ++ +L S + I E+ V+E F G +R T + AD + +I + Sbjct: 485 IAELLRILGSADRLMEVIREELELVREQF------GDKRRTEITANSADINL--EDLITQ 536 Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569 E + V +S++G+++ + + SA KE D + L A+T D IL S+ Sbjct: 537 EDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSR 596 Query: 570 GKAYTLPAGNLLSG-RG-HGEAIQLLIDLNHNQDIVTAFV----YDSTCKLLVVSSKGN 622 G+ Y++ L RG G I L+ L ++ I TA + ++ K+ + ++ G Sbjct: 597 GRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERI-TAILPVTEFEEGVKVFMATANGT 654 >gi|73916202|gb|AAZ92969.1| DNA gyrase subunit A [Streptococcus pneumoniae] Length = 822 Score = 418 bits (1074), Expect = e-114, Method: Compositional matrix adjust. Identities = 257/706 (36%), Positives = 414/706 (58%), Gaps = 38/706 (5%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 ++N+ V+L ++ ++ YA+S I RA+PD+RDG KPVHRRI++ M+E+G+ K Sbjct: 3 DKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHK 62 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSARI G+V+GK HPHGD S+Y+++VR+AQ + RY L+ G GNFG++DGDSAAA RYTE Sbjct: 63 KSARITGDVMGKYHPHGDYSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYTE 122 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 ARM+++A +L+ ++++ VDF D Y+ + EP+V P++FPNLL NG +GIAVGMAT+IP Sbjct: 123 ARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIPP 182 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E +A ++DNPE++ + L+E + GPDFPTG +++ + I ++Y G+G +R Sbjct: 183 HNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVM-GKSGIHKAYETGKGSIVLR 241 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312 +R +E G IVVTE PY V K+++ E I L+ KRI + +RDES E VR V Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 + K R ++++ ++F ++ M+T F NM + G +P+++ L IL ++ H++EV+ Sbjct: 302 IEVK-RDASANVILNNLFKMTQMQTNFGFNMLAIQNG-IPKILSLRQILDAYIEHQKEVV 359 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVD 429 RR+ F + + R IL+GLLIA +IDE+I IIR + + + ++S+F L+E Q Sbjct: 360 VRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSKFKLSERQTQ 419 Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489 AIL++RLR L LE +I+SE D+LLA + +L ++ I E+ EVK FS Sbjct: 420 AILDMRLRRLTGLERDKIQSEYDDLLALIADLADILAKPERVSQIIKDELDEVKRKFSD- 478 Query: 490 TDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSL--------KSHSVDL 540 +RRT E+ +L+ + +IE+ + + +SNRG+I+ L K + Sbjct: 479 ----KRRT---ELMVGQVLSLEDEDLIEESDVLITLSNRGYIKRLDQDEFTAQKRGGRGV 531 Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS-GR-GHGEAIQLLIDLNH 598 K+ D ++ + T D +L + G+ Y L + GR G + L+ L+ Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDE 591 Query: 599 NQDIVTAFVYDS----TCKLLVVSSKGNAFIVEESEI--IANTRK-GKTFLKVSSEEKMK 651 ++ I T +S L + G IV+ + + AN R+ G L + E+++ Sbjct: 592 DESIQTVINVESDRSDDAYLFFTTRHG---IVKRTSVKEFANIRQNGLKALNLKDEDELI 648 Query: 652 LVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSR-GKGVRLQSYKDG 695 V+ GD ++G + F+ + MSR GV+ + ++G Sbjct: 649 NVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMSRIATGVKGVNLREG 694 >gi|209885354|ref|YP_002289211.1| DNA gyrase, A subunit [Oligotropha carboxidovorans OM5] gi|209873550|gb|ACI93346.1| DNA gyrase, A subunit [Oligotropha carboxidovorans OM5] Length = 905 Score = 418 bits (1074), Expect = e-114, Method: Compositional matrix adjust. Identities = 236/595 (39%), Positives = 341/595 (57%), Gaps = 47/595 (7%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 ++K VS+ ++ YL YA+S I RA+PD RDG KPVHRRI++ M E G ++ ++KS Sbjct: 16 DIKPVSISDEMKRSYLDYAMSVIVSRALPDARDGLKPVHRRILYGMYENGFEWNKPYRKS 75 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 AR VG+VIGK HPHGDQSVYD+LVR+AQ F R PLI GQGNFG++DGD AA RYTE+R Sbjct: 76 ARTVGDVIGKYHPHGDQSVYDALVRMAQDFSMRVPLIDGQGNFGSVDGDMPAAMRYTESR 135 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 + ++A +L +D+D VDF+ Y+ + EP V P+KFPNLL NG GIAVGMAT+IP HN Sbjct: 136 LQKIAHSLLDDIDKDTVDFQPNYDASEREPKVLPAKFPNLLVNGAGGIAVGMATNIPPHN 195 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 + E+ +A +ALIDNP + I+ L+ + GPDFPTGGII+ R+ I +Y LGRG +R + Sbjct: 196 LGEVIDACIALIDNPALGIDDLINIVPGPDFPTGGIIL-GRQGIRSAYHLGRGSIVMRGK 254 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315 +E + + IVV+EIPYQV K+ ++E+IAEL+ K+I + D+RDES + V+ Sbjct: 255 VSIETIRKDREAIVVSEIPYQVNKATMVERIAELVRDKKIEGVSDLRDESDREGYRVVVE 314 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 R PD+++ ++ + ++T F NM L GR PQVM L +L ++A R V+ RR Sbjct: 315 LKRDAVPDVVLNQLYKFTPLQTSFGANMVALDGGR-PQVMNLKDLLTVFVAFRENVVSRR 373 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR------------ 420 + F + R IL GL IA NIDE+I +IR P + ++SR Sbjct: 374 TKFLLNKARDRAHILVGLAIAVANIDEVIRVIRTSPDPATARDTLMSRDWPARDVETMMM 433 Query: 421 --------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466 L+ Q AIL+LRL+ L L +I ELD L E +L Sbjct: 434 LIDDPRHRIAEDGTARLSMEQAKAILDLRLQRLTALGRDEISEELDKLAVEIADYLDILR 493 Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526 S + + + E+ +KE F+ RRT + + + +I++E + V +S+ Sbjct: 494 SRARVQDIVRNELNAIKEEFATP-----RRTMIID---QEGEVEDEDLIQREDMVVTVSH 545 Query: 527 RGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573 G++ R+ K S + +E D + A T +L S+ G+ Y Sbjct: 546 AGYVKRVPLSTYRAQKRGGKGRSGMQTREEDFVARLFVASTHTPVLFFSSRGQVY 600 >gi|307545311|ref|YP_003897790.1| DNA gyrase subunit A [Halomonas elongata DSM 2581] gi|307217335|emb|CBV42605.1| DNA gyrase subunit A [Halomonas elongata DSM 2581] Length = 899 Score = 418 bits (1074), Expect = e-114, Method: Compositional matrix adjust. Identities = 277/745 (37%), Positives = 417/745 (55%), Gaps = 75/745 (10%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 V++ L++ YL YA+S I RA+PD+RDG KPVHRR+++AM E+G D+ A+KKSAR+V Sbjct: 11 VNIEDELKQSYLDYAMSVIIGRALPDVRDGLKPVHRRVLYAMHELGNDWNKAYKKSARVV 70 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGD +VYD++VR+AQ F R+ L+ GQGNFG+IDGD+AAA RYTE RM ++ Sbjct: 71 GDVIGKYHPHGDSAVYDTIVRMAQDFSMRHVLVDGQGNFGSIDGDNAAAMRYTEVRMARL 130 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A +L +++D VD+ D Y+ + P V P+K PNLL NG+SGIAVGMAT+IP HN+ E+ Sbjct: 131 AHELLADLEKDTVDWVDNYDGTERIPDVLPTKLPNLLVNGSSGIAVGMATNIPPHNMVEV 190 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 + LALID+ +S++ L+EYI GPDFPTGGII R I+E+YR GRG VRAR +E Sbjct: 191 IDGCLALIDDYTLSVDDLMEYIPGPDFPTGGII-NGRAGILEAYRTGRGRIYVRARHTIE 249 Query: 260 EVGR-GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFPKN 317 + G I+VTE+PYQV K+RLIEKIAEL+ KRI + ++RDES E +R+V+ K Sbjct: 250 HDEKTGRDHIIVTELPYQVNKARLIEKIAELVKDKRIEGIAELRDESDKEGLRVVIEVK- 308 Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377 R ++++ ++F + ++ F +NM L G P+ + + +L+ ++ HRREV+ RR+ Sbjct: 309 RGESGEVVVNNLFAQTQLQNVFGINMVALDGGE-PRTLNIKEVLEAFIRHRREVVTRRTL 367 Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-----NEDKPK-------PVMVS------ 419 F ++ R IL+GL +A NIDE+I +I+ NE K K P V+ Sbjct: 368 FELKKARERGHILEGLTVAISNIDEVIELIKASPSANEAKEKLLERNWAPGQVTGMLERA 427 Query: 420 ---------------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458 + L+ Q AIL LRL L LE ++ E +L + Sbjct: 428 GATSCKPEDLEEGFGLDTAGKEYRLSPAQAQAILELRLHRLTGLETEKLLDEYLGILEKI 487 Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518 ++ ++L S + I E+ V++ F G R T + S D + + +I +E Sbjct: 488 AELTAILASADRLLEVIREELTAVRDQF------GETRRTEIQASHLDLSI--EDLIAEE 539 Query: 519 PITVVISNRGWIRS--LKSHSVDL------SALHFKEGDSLKIALHAHTTDRILLLSTDG 570 + V +S G+ ++ L + SA K+ D ++ L A T D +LL S G Sbjct: 540 DMVVTVSRSGYAKTQPLSDYQAQRRGGRGKSATSMKDEDVIEHLLVASTHDTVLLFSNRG 599 Query: 571 KAYTLPAGNL-LSGRG-HGEAIQLLIDLNHNQ---DIVTAFVYDSTCKLLVVSSKGNAFI 625 K Y L + + RG G+ + L+ L ++ I+ YD + ++KG Sbjct: 600 KVYWLKVYEMPAASRGSRGKPLVNLLPLEEDEAINAILPVHDYDPDSYIFFATAKGT--- 656 Query: 626 VEESEIIANTR-KGKTFLKVSSEEKMKLV---VKVTGDHVAVVGENRKLLIFSIDQIPEM 681 V+ + + +R + + + EE +LV + DH ++ N K + F + M Sbjct: 657 VKRTSLAQFSRPRSVGLIAIDLEEGDRLVGAAITSGSDHAMLLSSNGKAIRFDESNVRAM 716 Query: 682 SR-GKGVRLQSYKDGGISDVICFKI 705 R +GVR DG ++VI I Sbjct: 717 GRTARGVRGMRLLDG--AEVISLII 739 >gi|213417579|ref|ZP_03350721.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 817 Score = 418 bits (1074), Expect = e-114, Method: Compositional matrix adjust. Identities = 277/747 (37%), Positives = 411/747 (55%), Gaps = 69/747 (9%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + V++ L+ YL YA+S I RA+PD+RDG KPVHRR+++AM+ +G D+ A+KKSA Sbjct: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG+IDGDSAAA RYTE R+ Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 ++A ++ ++++ VDF D Y+ + P V P+K PNLL NG+SGIAVGMAT+IP HN+ Sbjct: 128 AKIAHGLMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ LA IDN +ISIE L+E+I GPDFPT II R I E+YR GRG +RAR Sbjct: 188 TEVINGCLAYIDNEDISIEGLMEHIPGPDFPTAAII-NGRRGIEEAYRTGRGKVYIRARA 246 Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314 VE + G I+V EIPYQV K+RLIEKIAEL+ KR+ + +RDES +D +RIV+ Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKDGMRIVIE 306 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K ++ ++++ +++ + ++ F +NM L G+ P++M L I+ ++ HRREV+ R Sbjct: 307 VKRDAVG-EVVLNNLYSQTQLQVSFGINMVALHHGQ-PKIMNLKDIISAFVRHRREVVTR 364 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----------- 420 R+ F ++ R IL+ L IA NID II +IR P K ++SR Sbjct: 365 RTIFELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAALISRPWDLGNVAAML 424 Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457 + LTE Q AIL+LRL+ L LE ++ E LL + Sbjct: 425 ERAGDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQ 484 Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517 ++ +L S + I E+ +++ F G R T + AD + +I + Sbjct: 485 IAELLHILGSADRLMEVIREEMELIRDQF------GDERRTEITANSADINI--EDLISQ 536 Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569 E + V +S++G+++ + + SA KE D + L A+T D IL S+ Sbjct: 537 ENVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSR 596 Query: 570 GKAYTLPAGNLL-SGRG-HGEAIQLLIDLNHNQDIVTAFV----YDSTCKLLVVSSKGNA 623 G+ Y + L + RG G I L+ L N+ I TA + Y+ + + ++ G Sbjct: 597 GRLYWMKVYQLPEASRGARGRPIVNLLPLEANERI-TAILPVREYEEGVNVFMATASGTV 655 Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMS 682 +E G + ++ +++ V +G D V + K++ F D + M Sbjct: 656 KKTALTEFSRPRSAGIIAVNLNDGDELIGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAMG 715 Query: 683 R-GKGVRLQSYKDGGISDVICFKICEG 708 R GVR K G V+ I G Sbjct: 716 RTATGVR--GIKLAGDDKVVSLIIPRG 740 >gi|134301444|ref|YP_001121412.1| DNA gyrase, subunit A [Francisella tularensis subsp. tularensis WY96-3418] gi|134049221|gb|ABO46292.1| DNA gyrase, A subunit [Francisella tularensis subsp. tularensis WY96-3418] Length = 868 Score = 418 bits (1074), Expect = e-114, Method: Compositional matrix adjust. Identities = 258/736 (35%), Positives = 420/736 (57%), Gaps = 87/736 (11%) Query: 11 TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70 +++ + ++++ L++ YL YA+S I RA+PD+RDG KPVHRR++ AM+E+ + Sbjct: 2 SIITKESSSINIEKELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELSNYYNR 61 Query: 71 AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130 +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG++DGDS AA R Sbjct: 62 PYKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYTLVDGQGNFGSVDGDSPAAMR 121 Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190 YTE RM ++ +L +D++ VDF Y+ + P V P++ PNLL NG+SGIAVGMAT+ Sbjct: 122 YTEIRMEKLTHELLIDIDKETVDFSPNYDNTELVPDVLPTRVPNLLVNGSSGIAVGMATN 181 Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250 IP HN+ E+ +ALIDNP ++IE+L+EYI+ PDFPTG I + I+E+Y+ GRG Sbjct: 182 IPPHNMTEVINGTIALIDNPNLTIEELIEYILAPDFPTGSYI-NGTDGILEAYKTGRGRV 240 Query: 251 RVRARWCV-EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED- 308 +RA+ + E+ G I+VTEIPYQV K++L+EKIAEL+ K++ + ++RDES +D Sbjct: 241 IMRAKADIHEDEASGKAQIIVTEIPYQVNKAKLVEKIAELVKDKKVAGISELRDESDKDG 300 Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368 +R+V+ K R P++++ +++ + ++ F +NM LS R P+++ L IL++++ HR Sbjct: 301 IRVVIDLK-RDESPEVVLNTLYAQTQLQCSFGINMVALSDNR-PKLLNLKEILEQFIKHR 358 Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----- 420 +EV+ RR+ F ++ R IL+GLL++ NIDE+I +I+ P K M++R Sbjct: 359 KEVVTRRTIFELRKSKERAHILEGLLLSLANIDEMIELIKASPSPADAKESMLARSWNGS 418 Query: 421 ------------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSE 450 ++LTE Q DAIL LRL L LE+ +I +E Sbjct: 419 MVKSMLEGVDVKMYRKETLASHYGIQVDSSYNLTEEQADAILALRLHRLTGLEQDKIVNE 478 Query: 451 LDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATL 510 L+ + + S+L+ K+ + E+ E+++ + +R++ E SR D Sbjct: 479 FKELIDRIKYLISILSDIKELIRVVKDELVEIRDNYGD-----QRKSEIIE-SRLD--LT 530 Query: 511 QQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDR 562 ++ +I +E + V +S G++++ K V SA KE DS+ + A T D Sbjct: 531 REDLIAEEDMVVTLSMDGYVKTQPLSMYNAQKRGGVGKSATKTKEEDSIFKLMLASTHDT 590 Query: 563 ILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV----YDSTCK 613 +L S+ G K Y P + +S G I ++ L ++ I TA + ++ Sbjct: 591 MLCFSSLGRVYWSKVYDFPVASRIS---KGRPINNILPLEKDERI-TAMMPISQFNEGWY 646 Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIF 673 + + + G V+ SE GK + ++ +++ +VA+ N+++++F Sbjct: 647 VFMATKLGRVKKVDLSEFARPRSTGKIAIGLNDGDELS--------YVALTDGNKQIMMF 698 Query: 674 SIDQIPEMSRGKGVRL 689 S GK +R Sbjct: 699 S-------DAGKAIRF 707 >gi|15903142|ref|NP_358692.1| DNA gyrase subunit A [Streptococcus pneumoniae R6] gi|116516676|ref|YP_816548.1| DNA gyrase subunit A [Streptococcus pneumoniae D39] gi|168486542|ref|ZP_02711050.1| DNA gyrase, A subunit [Streptococcus pneumoniae CDC1087-00] gi|30913085|sp|Q8DPM2|GYRA_STRR6 RecName: Full=DNA gyrase subunit A gi|15458723|gb|AAK99902.1| DNA gyrase subunit A [Streptococcus pneumoniae R6] gi|73916134|gb|AAZ92935.1| DNA gyrase subunit A [Streptococcus pneumoniae] gi|73916208|gb|AAZ92972.1| DNA gyrase subunit A [Streptococcus pneumoniae] gi|73916220|gb|AAZ92978.1| DNA gyrase subunit A [Streptococcus pneumoniae] gi|116077252|gb|ABJ54972.1| DNA gyrase, A subunit [Streptococcus pneumoniae D39] gi|183570436|gb|EDT90964.1| DNA gyrase, A subunit [Streptococcus pneumoniae CDC1087-00] Length = 822 Score = 418 bits (1074), Expect = e-114, Method: Compositional matrix adjust. Identities = 257/706 (36%), Positives = 414/706 (58%), Gaps = 38/706 (5%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 ++N+ V+L ++ ++ YA+S I RA+PD+RDG KPVHRRI++ M+E+G+ K Sbjct: 3 DKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHK 62 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSARI G+V+GK HPHGD S+Y+++VR+AQ + RY L+ G GNFG++DGDSAAA RYTE Sbjct: 63 KSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYTE 122 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 ARM+++A +L+ ++++ VDF D Y+ + EP+V P++FPNLL NG +GIAVGMAT+IP Sbjct: 123 ARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIPP 182 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E +A ++DNPE++ + L+E + GPDFPTG +++ + I ++Y G+G +R Sbjct: 183 HNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVM-GKSGIHKAYETGKGSIVLR 241 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312 +R +E G IVVTE PY V K+++ E I L+ KRI + +RDES E VR V Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 + K R ++++ ++F ++ M+T F NM + G +P+++ L IL ++ H++EV+ Sbjct: 302 IEVK-RDASANVILNNLFKMTQMQTNFGFNMLAIQNG-IPKILSLRQILDAYIEHQKEVV 359 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVD 429 RR+ F + + R IL+GLLIA +IDE+I IIR + + + ++S+F L+E Q Sbjct: 360 VRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSKFKLSERQSQ 419 Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489 AIL++RLR L LE +I+SE D+LLA + +L ++ I E+ EVK FS Sbjct: 420 AILDMRLRRLTGLERDKIQSEYDDLLALIADLADILAKPERVSQIIKDELDEVKRKFSD- 478 Query: 490 TDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSL--------KSHSVDL 540 +RRT E+ +L+ + +IE+ + + +SNRG+I+ L K + Sbjct: 479 ----KRRT---ELMVGQVLSLEDEDLIEESDVLITLSNRGYIKRLDQDEFTAQKRGGRGV 531 Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS-GR-GHGEAIQLLIDLNH 598 K+ D ++ + T D +L + G+ Y L + GR G + L+ L+ Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDE 591 Query: 599 NQDIVTAFVYDS----TCKLLVVSSKGNAFIVEESEI--IANTRK-GKTFLKVSSEEKMK 651 ++ I T +S L + G IV+ + + AN R+ G L + E+++ Sbjct: 592 DESIQTVINVESDRSDDAYLFFTTRHG---IVKRTSVKEFANIRQNGLKALNLKDEDELI 648 Query: 652 LVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSR-GKGVRLQSYKDG 695 V+ GD ++G + F+ + MSR GV+ + ++G Sbjct: 649 NVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMSRIATGVKGVNLREG 694 >gi|307947099|ref|ZP_07662434.1| DNA gyrase, A subunit [Roseibium sp. TrichSKD4] gi|307770763|gb|EFO29989.1| DNA gyrase, A subunit [Roseibium sp. TrichSKD4] Length = 925 Score = 418 bits (1074), Expect = e-114, Method: Compositional matrix adjust. Identities = 246/632 (38%), Positives = 369/632 (58%), Gaps = 55/632 (8%) Query: 13 VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72 V ++K +S+ ++ YL YA+S I RA+PD+RDG KPVHRRI+++M+E G ++ + Sbjct: 13 VPSDIKPISIVDEMKSSYLDYAMSVIVSRALPDVRDGLKPVHRRILYSMNENGYEWNKPY 72 Query: 73 KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132 +KSAR+VG+V+GK HPHGD ++YD+LVR+AQ F R PLI GQGNFG+IDGD AAA RYT Sbjct: 73 RKSARVVGDVMGKYHPHGDSAIYDALVRMAQNFSLRLPLIDGQGNFGSIDGDRAAAMRYT 132 Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192 E R+ +VA +L +D+D VDF++ Y+ +SEPVV P+KFPNLL NG GIAVGMAT+IP Sbjct: 133 ECRLEKVAHKLLDDIDKDTVDFQENYDNSESEPVVLPAKFPNLLVNGAGGIAVGMATNIP 192 Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252 HN+ E+ +AA+A++ NP +++ +L++ + GPDFPTGGII+ R I +Y GRG + Sbjct: 193 PHNLGEVIDAAIAVMVNPAMTVAELMDIVPGPDFPTGGIIL-GRSGIRSAYESGRGSVVM 251 Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312 R++ VEE+ + ++V+EIPYQV KS +IEKIAE + KRI + DIRDES V Sbjct: 252 RSKVDVEEIRKDRNALIVSEIPYQVNKSSMIEKIAEAVRDKRIEGISDIRDESDRSGMRV 311 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 + R PD+++ ++ S ++T F NM L+ G+ P+ + L ILK +++ R EV+ Sbjct: 312 VIELKRDAVPDVVLNQLYRYSQLQTSFGCNMVALNGGK-PEQLNLPDILKAFISFREEVV 370 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP-----------------KP 415 RR+ F ++ R IL GL IA NIDE+I +IR P +P Sbjct: 371 QRRTKFLLKKARDRAHILVGLGIAVANIDEVIHLIRTAPDPATARAQLMERDWPARDVEP 430 Query: 416 V---------MVSR---FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDS 463 + MV + L+E Q AIL+LRL+ L L +I EL + AE Sbjct: 431 LIRLIDDPRHMVQEDGTYKLSEEQARAILDLRLQRLTALGRDEIADELSKIGAEISDFLD 490 Query: 464 LLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVV 523 +L S + + + E+ E+KE F+ R+T E+ + +I++E + V Sbjct: 491 ILRSRARIQDIVRGEMLEIKEEFATP-----RKT---EIVDGGADFDDEDLIQREDMVVT 542 Query: 524 ISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG----- 570 +S+ G+I R+ + S + K+ D + A+T +L S+ G Sbjct: 543 VSHNGYIKRVPLATYRAQRRGGKGRSGMATKDEDFVTRLFVANTHTPVLFFSSRGICYKM 602 Query: 571 KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602 K + LP G +S G+A+ ++ L + I Sbjct: 603 KVWRLPLGGPIS---RGKALINMLPLEQGEQI 631 >gi|212697383|ref|ZP_03305511.1| hypothetical protein ANHYDRO_01953 [Anaerococcus hydrogenalis DSM 7454] gi|212675575|gb|EEB35182.1| hypothetical protein ANHYDRO_01953 [Anaerococcus hydrogenalis DSM 7454] Length = 813 Score = 418 bits (1074), Expect = e-114, Method: Compositional matrix adjust. Identities = 242/605 (40%), Positives = 386/605 (63%), Gaps = 29/605 (4%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 +N+ V L + YL Y++S I RA+PD+RDG KPVHRRI++ M +GLD +K Sbjct: 7 QNIIEVELEEQMRSAYLEYSMSVIVSRALPDVRDGLKPVHRRILYGMEGLGLDPNKPTRK 66 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 SAR+VGEV+GK HPHGD ++YD+LVRLAQ F RYPL +GQGNFG+IDGD AAA RYTE Sbjct: 67 SARVVGEVMGKFHPHGDSAIYDALVRLAQDFSTRYPLANGQGNFGSIDGDDAAAMRYTEV 126 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 +M+++A+ +L+ +++D VDF ++EE+ EP V PS+FPNLL NG++GIAVGMAT++ H Sbjct: 127 KMSKIAKEMLRDINKDTVDFMPNFDEEEKEPTVLPSRFPNLLVNGSNGIAVGMATNMAPH 186 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 N+ + +A +A ++NPEIS+++L + I GPDFPTG I+ + I ++Y+ GRG ++RA Sbjct: 187 NLGDSIDACIAYMNNPEISVKELADIIKGPDFPTGAQIL-GKAGIKKAYKTGRGKLKLRA 245 Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVL 313 +E + I+VTEIPYQV K+ LI+KIAE + K++ + DIRDES + +RIV+ Sbjct: 246 VARIEPFKKNRERIIVTEIPYQVNKANLIKKIAEYVKDKKLEGISDIRDESDRKGMRIVI 305 Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373 K R + ++++ +++ + +ET F + +N+ + VP+++ L ++K ++ H+++V+ Sbjct: 306 EVK-RDSNANIVLNNLYKQTQLETTFGI-INLALVDGVPKILDLKELIKYYVKHQKDVVR 363 Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDA 430 RR+ F + +R I++GL+IA NIDEII IIR + D+ K + +F LT+ Q A Sbjct: 364 RRTKFDLDKAQKRKHIVEGLIIAIDNIDEIIKIIRSSYDNDQIKKIFNEKFGLTDPQSQA 423 Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEK-EKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489 IL+++L+ L LE ++++E D LAEK E S+LN ++ + I EI E+KE ++ Sbjct: 424 ILDMQLKRLSGLEIEKLQAE-DKELAEKIEYFTSILNDEEKLISVIEEEILEIKEKYADD 482 Query: 490 TDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSLKSHSVD--------L 540 RRT D+ + +IEKE + + +++ G+I+ L ++ + Sbjct: 483 -----RRTKIV----PDEGEFDIEELIEKEDVLISLTHDGYIKRLPINTYKVQNRGGKGI 533 Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNH 598 SA + KE D ++ L +T + +L + G+ Y+L + S + G+AI LI L+ Sbjct: 534 SAGNTKENDFIQKILTTNTHESLLCFTNLGRVYSLKCYEIPEASRQSRGQAIINLISLSS 593 Query: 599 NQDIV 603 ++ I Sbjct: 594 DEKIT 598 >gi|158338824|ref|YP_001520001.1| DNA gyrase subunit A [Acaryochloris marina MBIC11017] gi|158309065|gb|ABW30682.1| DNA gyrase, A subunit [Acaryochloris marina MBIC11017] Length = 824 Score = 418 bits (1074), Expect = e-114, Method: Compositional matrix adjust. Identities = 265/697 (38%), Positives = 405/697 (58%), Gaps = 33/697 (4%) Query: 10 NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69 N L V A +L +E+ YL YA+S I RA+PD+RDG KPVHRRI++AM E+GL Sbjct: 6 NLLSSGKVIATALHTEMEQSYLEYAMSVIVGRALPDVRDGLKPVHRRILYAMHELGLTPD 65 Query: 70 AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129 ++K AR+VG+V+GK HPHGDQ+VYD+LVRL Q F RYPL++G GNFG++D D AA Sbjct: 66 RPYRKCARVVGDVLGKYHPHGDQAVYDALVRLVQDFSSRYPLLAGHGNFGSVDNDPPAAM 125 Query: 130 RYTEARMTQVA-ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188 RYTE R++ + + +L+ + E V+F ++ EP V P++ P LL NG SGIAVGMA Sbjct: 126 RYTETRLSPIGNQSLLEEIGESTVEFAANFDNSQQEPTVLPAQLPTLLLNGCSGIAVGMA 185 Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248 T+IP HN+ EI +A +ALID+P++++EKL+ + GPDFPTGG IV ++ I+++Y GRG Sbjct: 186 TNIPPHNLGEIVDALVALIDSPDMTLEKLMALVPGPDFPTGGEIV-GKQGIIDAYTNGRG 244 Query: 249 GFRVRARWCVEEV--GRGSW---CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303 VRA +EE+ GRG I+VTE+PYQV K+ IEKIA LI RI + D+RD Sbjct: 245 SITVRAVTSIEEIQPGRGRHRRPVIIVTELPYQVNKAGCIEKIASLINQGRIEGIADLRD 304 Query: 304 ES-AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362 ES E +RIV+ K R P ++E ++ L+ +++ F + M L G VP + L +L+ Sbjct: 305 ESDREGMRIVIELK-REAQPPAVLEQLYRLTPLQSNFGVIMLALVNG-VPLQLSLKEVLQ 362 Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVS 419 ++L R + L RR +++ R +++GL+ A ++D++I I+R+ K + S Sbjct: 363 KFLDFREQTLTRRYQNQLEQAQSRQHLVEGLIKALDHLDDLIEILRHAPDGTTAKVQLKS 422 Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479 +F L+ +Q DAIL + +R L LE+ ++ E D+L E ++ LL + + + ++ Sbjct: 423 QFQLSGSQADAILAMPMRRLTGLEQQNLRQEFDDLAQEIGDLERLLGNRHELLKALKKDL 482 Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL-----K 534 R +K+ +S RRT A K + A + E + V ++ RG+ R + K Sbjct: 483 RALKKQYSDP-----RRTVIH--GAAAKTEIFAAPVSDESVIVELNQRGYARCMRVSKRK 535 Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLST-DGKAY--TLPAGNLLSGRGHGEA-I 590 +++ DLS L I H LLL T GKAY L + S +G G+ + Sbjct: 536 NNAPDLSGELADVSTDLTIFRHTTELTTDLLLFTGSGKAYGVGLQSIPFTSSKGKGKPLV 595 Query: 591 QLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE 647 LL D + +I+ F+ T +L+++S +G + SE T +G K+ S Sbjct: 596 TLLPDSGRDDEIIARFLSTEISDTSQLILLSQQGKIKRLPMSEFAEMTSRGLGAAKIKSG 655 Query: 648 EKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR 683 +++ VVK + +VA+ + +LL I +IPEM R Sbjct: 656 DQLGWVVKAEQETNVAIATSSGRLLNIPITEIPEMGR 692 >gi|298502785|ref|YP_003724725.1| DNA topoisomerase [Streptococcus pneumoniae TCH8431/19A] gi|298238380|gb|ADI69511.1| DNA topoisomerase (ATP-hydrolyzing) [Streptococcus pneumoniae TCH8431/19A] Length = 841 Score = 418 bits (1074), Expect = e-114, Method: Compositional matrix adjust. Identities = 257/706 (36%), Positives = 414/706 (58%), Gaps = 38/706 (5%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 ++N+ V+L ++ ++ YA+S I RA+PD+RDG KPVHRRI++ M+E+G+ K Sbjct: 22 DKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHK 81 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSARI G+V+GK HPHGD S+Y+++VR+AQ + RY L+ G GNFG++DGDSAAA RYTE Sbjct: 82 KSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYTE 141 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 ARM+++A +L+ ++++ VDF D Y+ + EP+V P++FPNLL NG +GIAVGMAT+IP Sbjct: 142 ARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIPP 201 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E +A ++DNPE++ + L+E + GPDFPTG +++ + I ++Y G+G +R Sbjct: 202 HNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVM-GKSGIHKAYETGKGSIVLR 260 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312 +R +E G IVVTE PY V K+++ E I L+ KRI + +RDES E VR V Sbjct: 261 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 320 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 + K R ++++ ++F ++ M+T F NM + G +P+++ L IL ++ H++EV+ Sbjct: 321 IEVK-RDASANVILNNLFKMTQMQTNFGFNMLAIQNG-IPKILSLRQILDAYIEHQKEVV 378 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVD 429 RR+ F + + R IL+GLLIA +IDE+I IIR + + + ++S+F L+E Q Sbjct: 379 VRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSKFKLSERQSQ 438 Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489 AIL++RLR L LE +I+SE D+LLA + +L ++ I E+ EVK FS Sbjct: 439 AILDMRLRRLTGLERDKIQSEYDDLLALIADLADILAKPERVSQIIKDELDEVKRKFSD- 497 Query: 490 TDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSL--------KSHSVDL 540 +RRT E+ +L+ + +IE+ + + +SNRG+I+ L K + Sbjct: 498 ----KRRT---ELMIGQVLSLEDEDLIEESDVLITLSNRGYIKRLDQDEFTAQKRGGRGV 550 Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS-GR-GHGEAIQLLIDLNH 598 K+ D ++ + T D +L + G+ Y L + GR G + L+ L+ Sbjct: 551 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDE 610 Query: 599 NQDIVTAFVYDS----TCKLLVVSSKGNAFIVEESEI--IANTRK-GKTFLKVSSEEKMK 651 ++ I T +S L + G IV+ + + AN R+ G L + E+++ Sbjct: 611 DESIQTVINVESDRSDDAYLFFTTRHG---IVKRTSVKEFANIRQNGLKALNLKDEDELI 667 Query: 652 LVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSR-GKGVRLQSYKDG 695 V+ GD ++G + F+ + MSR GV+ + ++G Sbjct: 668 NVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMSRIATGVKGVNLREG 713 >gi|254464123|ref|ZP_05077534.1| DNA gyrase, A subunit [Rhodobacterales bacterium Y4I] gi|206685031|gb|EDZ45513.1| DNA gyrase, A subunit [Rhodobacterales bacterium Y4I] Length = 901 Score = 418 bits (1074), Expect = e-114, Method: Compositional matrix adjust. Identities = 259/718 (36%), Positives = 403/718 (56%), Gaps = 70/718 (9%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 VS+ + YL YA+S I RAIPDLRDG KPVHRRI++AM E G A++KSAR V Sbjct: 16 VSIEAEMRNSYLDYAMSVIVSRAIPDLRDGLKPVHRRILYAMHESGNTHDKAYRKSARPV 75 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+V+GK HPHGD ++YD+LVR+AQ F PL+ GQGNFG++DGD+ AA RYTE RM + Sbjct: 76 GDVMGKYHPHGDSAIYDALVRMAQDFSMSLPLLDGQGNFGSMDGDNPAAMRYTEVRMDKP 135 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A +L ++++ VDF+D Y+ +D EP V P++FPN+L NG GIAVGMAT+IP HN+ E+ Sbjct: 136 AAALLADIEKETVDFQDNYDGKDREPTVLPARFPNMLVNGAGGIAVGMATNIPPHNLGEV 195 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 +A LALI++P+++ E+L+EYI GPDFPTG +++ R ++Y GRG +RA+ VE Sbjct: 196 VDATLALIEDPDLTSEQLIEYIPGPDFPTGALML-GRSGARKAYLEGRGSVIIRAKTRVE 254 Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKNR 318 E+ + + IVV EIPYQV K+ +IEKIAE + K+I + ++DES + VR+V+ K R Sbjct: 255 EIRKDRYAIVVDEIPYQVNKAAMIEKIAEQVREKKIEGVAHVQDESDRNGVRVVVELK-R 313 Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378 P++++ ++ + M+T F NM L+ GR P+ + L L ++ R +V+ RR++ Sbjct: 314 DATPEVVLNQLYRFTPMQTYFGCNMLALNGGR-PEQLTLRRFLTSFIDFREDVVARRTAH 372 Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE----DKPKPVMVSR-------------- 420 ++ R IL GL +A NIDEI+ IR + + +M R Sbjct: 373 LLRKARERSHILCGLAVAVTNIDEIVTTIRQSTDAAEAREKLMTRRWPAQPILEYIALID 432 Query: 421 -----------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGK 469 ++L+E Q AIL LRL+ L ++ ++ EL+ L + + +L+S + Sbjct: 433 DPTHTANDDGTYNLSEAQARAILELRLQRLTQIGVKEVTDELEELAGKIKDYLEILSSRE 492 Query: 470 QQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW 529 + I+ E+REV++ F+ RRT + S + +IE+E + V +++ GW Sbjct: 493 RIMGIISDELREVRDNFAVP-----RRTEIVDWS---GDMEDEDLIEREDMVVTVTSGGW 544 Query: 530 I--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL- 580 I R+ K LS + KE D + A+T ++L +TDG Y L L Sbjct: 545 IKRTPLADFRAQKRGGKGLSGMQTKEEDVVTTLFVANTHTQLLFFTTDGMVYKLKTWRLP 604 Query: 581 LSGR-GHGEAIQLLIDLNHNQDIVTAFVYD------STCKLLVVSSKGNAFIVEESEIIA 633 SGR G G+AI ++ + I D +++ +S G+ S+ Sbjct: 605 QSGRTGKGKAIVNILPIPTGVSIAAIMPVDVPDEEWENLQVVFATSGGDVRRNRLSDFTN 664 Query: 634 NTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQS 691 R GK +K+ + +KLV +V + E+ +++F+ + G+ +R +S Sbjct: 665 VRRNGKIAMKLPEDGSVKLV------NVRICSEDDDVMLFT-------NSGRAIRFRS 709 >gi|99081173|ref|YP_613327.1| DNA gyrase subunit A [Ruegeria sp. TM1040] gi|99037453|gb|ABF64065.1| DNA gyrase A subunit [Ruegeria sp. TM1040] Length = 912 Score = 418 bits (1074), Expect = e-114, Method: Compositional matrix adjust. Identities = 251/676 (37%), Positives = 381/676 (56%), Gaps = 57/676 (8%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 VS+ + YL YA+S I RAIPDLRDG KPVHRRI++AM E G A++KSAR V Sbjct: 26 VSIESEMRNSYLDYAMSVIVSRAIPDLRDGLKPVHRRILYAMHETGNSHDKAYRKSARPV 85 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+V+GK HPHGD ++YD+LVR+AQ F PL+ GQGNFG++DGD+ AA RYTE RM + Sbjct: 86 GDVMGKYHPHGDSAIYDALVRMAQDFSMSLPLLDGQGNFGSMDGDNPAAMRYTEVRMDKP 145 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A +L ++++ VDF+D Y+ +D EP V P++FPN+L NG GIAVGMAT+IP HN+ E+ Sbjct: 146 AAFMLADIEKETVDFQDNYDGKDKEPTVLPARFPNMLVNGAGGIAVGMATNIPPHNLGEV 205 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 +A LALI++P+++ E+L+EY+ GPDFPTGG+++ R ++Y GRG +RA+ VE Sbjct: 206 VDATLALIEDPDLTSEQLIEYVPGPDFPTGGVML-GRSGARKAYLEGRGSVIIRAKTRVE 264 Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKNR 318 E+ + + IVV EIPYQV K+ +IEKIAE + KRI + ++DES + VR+V+ K R Sbjct: 265 EIRKDRYAIVVDEIPYQVNKASMIEKIAEQVREKRIEGVAHVQDESDRNGVRVVVELK-R 323 Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378 P++++ ++ + M+T F NM L+ GR P+ + L L ++ R +V+ RR+++ Sbjct: 324 DATPEVVLNQLYRFTPMQTSFGCNMLALNGGR-PEQLTLRKFLTSFIDFREDVVARRTAY 382 Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---------------------------D 411 ++ R IL GL +A N+DE++A IR+ D Sbjct: 383 NLRKARERSHILCGLAVAVSNVDEVVATIRSSADAAEARHKLMTRRWPAADIAGYIRLID 442 Query: 412 KPKPVMV--SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGK 469 P M ++L+E Q AIL LRL+ L +L ++ EL+ L + ++ +L+S + Sbjct: 443 DPTHTMNDDGTYNLSEVQARAILELRLQRLTQLGVKEVTDELEELAGKIKEYLEILSSRE 502 Query: 470 QQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW 529 + + IA E+ EV+E F+ RRT + S + +IE+E + V +++ G+ Sbjct: 503 RIMSIIADELAEVRESFAVP-----RRTEIVDWS---GDMEDEDLIEREDMVVTVTSGGY 554 Query: 530 I--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL 581 I R+ K LS + KE D + A+T ++L +TDG Y L L Sbjct: 555 IKRTPLADFRAQKRGGKGLSGMQTKEEDVVTTLFVANTHTQLLFFTTDGMVYKLKTWRLP 614 Query: 582 SG--RGHGEAIQLLIDLNHNQDIVTAFVYDSTCK------LLVVSSKGNAFIVEESEIIA 633 G G+AI ++ + I D K ++ +S G S+ Sbjct: 615 QGGRTSKGKAIVNILPIPTGVSIAAIMPVDRDEKEWDDLQIMFATSAGTVRRNRLSDFTN 674 Query: 634 NTRKGKTFLKVSSEEK 649 R GK +K E + Sbjct: 675 VMRNGKIAMKFEDENQ 690 >gi|284931762|gb|ADC31700.1| DNA gyrase subunit A [Mycoplasma gallisepticum str. F] Length = 846 Score = 418 bits (1074), Expect = e-114, Method: Compositional matrix adjust. Identities = 265/775 (34%), Positives = 428/775 (55%), Gaps = 68/775 (8%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 VK S+ LE ++ YA+S I RA+P+ RDG KPVHRR+++ GL + ++KSA Sbjct: 18 VKEASITKELETSFMEYAMSVIVSRALPESRDGLKPVHRRVLYGAYTSGLTYDKPYRKSA 77 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 +IVG V+GK HPHGD ++Y+++VR+AQPF RY LI G GNFG+IDGDSAAA RYTEAR+ Sbjct: 78 QIVGHVMGKYHPHGDSAIYETMVRMAQPFSLRYMLIDGHGNFGSIDGDSAAAMRYTEARL 137 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 ++++ +L+ +D+D VDF D Y+ + EPVV PS FPNLLANG+SGIAVGMAT+IP HN+ Sbjct: 138 SKISAEMLRNIDKDTVDFVDNYDASEQEPVVLPSLFPNLLANGSSGIAVGMATNIPPHNL 197 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ L+ N +IE+L E+I GPDFPT I+ I E + GRG VRA+ Sbjct: 198 SELIGGIKHLLVNENATIEELKEFIKGPDFPTAAEIL-GETGINEYFNTGRGSVSVRAKS 256 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLFP 315 +EE+ IV+T+IPY V K+ LI KIAEL+ ++I + D+RDES E +RIV+ Sbjct: 257 EIEELANNKSNIVITQIPYMVNKANLINKIAELVKTEQIQGIADLRDESNREGIRIVIET 316 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 K R + P++L+ ++ + ++T F + M L + P+V+ L L+ ++ H+ ++L R+ Sbjct: 317 K-RDVIPEVLLNQLYKSTQLQTNFSVAMLAL-VNNQPKVLNLKEALQIYIDHQFDILLRK 374 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLTENQVDAIL 432 ++F ++ I++GL+IA NID++I II+N + K +++++ L++ Q AIL Sbjct: 375 TNFELKKAKASAHIVEGLVIATNNIDDVIEIIKNAKDNEDAKNTLMTKYELSDLQAKAIL 434 Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492 ++RLRSL LE ++ EL L + ++ +L + +++ I+ ++ E+ F Sbjct: 435 DMRLRSLSGLERENLQKELAKLKELIKDLEEILQNKERRIKIISDQLDEIDHKFGD---- 490 Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHS--------VDLSALH 544 RRT C + + +I E + + S++G+++ + + V + ++ Sbjct: 491 -ERRTKIC--YGLNSTIDNEQLIPVETVVITRSSKGYLKRIPISAYKVQHRGGVGVKGMN 547 Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLLSGRGHGEA 589 E D ++ + T +L + GK Y +PA NL+S E Sbjct: 548 TYEDDDVESLIVCSTHSDLLFFTNYGKVYRIRAHQVPLGSRISKGIPAINLISIE-KDEK 606 Query: 590 IQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649 + L+ +N D + + + ST K LV K + F S I N GK +K++ + Sbjct: 607 LMSLLSIN---DYDSGYFFFSTKKGLVKRVKASEF----SRIQNN---GKIAIKLTENDS 656 Query: 650 MKLVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSRGK----GVRLQSYKDG--GISD--- 699 + V+K GD +G + LL+ F D + M R GV+ ++ D G+S Sbjct: 657 LFKVIKTAGDEEIYIGVSSGLLVRFKEDVVRSMGRTAQGVIGVKFKNPNDEVIGLSSSHE 716 Query: 700 -VICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753 + +CE G+ +R E + RG G + K P++G +++ Sbjct: 717 GSLLLAVCE-----KGVGKMTDREEY----RMTNRGSKGVITIKVTPKTGNIINT 762 >gi|292669307|ref|ZP_06602733.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Selenomonas noxia ATCC 43541] gi|292649148|gb|EFF67120.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Selenomonas noxia ATCC 43541] Length = 815 Score = 418 bits (1074), Expect = e-114, Method: Compositional matrix adjust. Identities = 243/599 (40%), Positives = 356/599 (59%), Gaps = 23/599 (3%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 V V+L ++ Y+ YA+S I RA+PD+RDG KPVHRRI++AM G+ +KKSA Sbjct: 10 VVPVNLEHEMKNSYIDYAMSVIVARALPDVRDGLKPVHRRILYAMQGSGMTSSKPYKKSA 69 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 RIVGEV+GK HPHGD SVYD++VR+AQ F RY L G GNFG++DGDSAAA RYTE RM Sbjct: 70 RIVGEVLGKYHPHGDSSVYDAIVRMAQDFSMRYMLADGHGNFGSVDGDSAAAMRYTEVRM 129 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 +++AEL+L+ +D++ VDF D Y+ + EP V P+KFP LL NGT+GIAVGMAT+IP HN+ Sbjct: 130 SKIAELMLRDIDKETVDFVDNYDGSEKEPSVLPAKFPQLLVNGTAGIAVGMATNIPPHNM 189 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ L LIDNPE +IE+L+ I GPDFPT G+I+ + E I ++Y GRG ++RAR Sbjct: 190 VEVINGTLMLIDNPETTIEELMGVIKGPDFPTAGLILGT-EEIRKAYTTGRGVIKMRARA 248 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316 +E + G I+VTE+PYQV K+RLIEKIAEL+ K+I + D+RDES ++ Sbjct: 249 HIETMSSGKPRILVTELPYQVNKARLIEKIAELVRDKQIDGITDLRDESDRSGMRIVIEL 308 Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376 R P++++ ++ + ++ F + M L G+ P +M L IL +++H+ V+ RR+ Sbjct: 309 RRDSAPNVILNQLYKHTQLQDSFGVIMLALVDGQ-PVIMNLKQILGHYISHQENVITRRT 367 Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAII---RNEDKPKPVMVSRFSLTENQVDAILN 433 + + + R IL+GL IA ++D +I I R D + ++ F LTE Q AIL+ Sbjct: 368 QYELAKAEARAHILEGLTIALDHLDAVITTIRESRTADIARTALMDGFKLTEKQAQAILD 427 Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493 LRL+ L LE +I+ E +L E++ +L + I E+ EV++ K D Sbjct: 428 LRLQRLTGLEREKIEEEYQEVLRMIEELKGILADRMKVLAIIKDELIEVRD---KYGDER 484 Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSVDLSALHF 545 R TF + S D L I +E + V ++ +I+ + + V + + Sbjct: 485 RTEITF-DASEMDITDL----IAEEDVVVTLTMSNYIKRIPLDTYRRQRRGGVGVKGMGT 539 Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEAIQLLIDLNHNQDI 602 KE D + L T IL + G+ + L A + SGR G AI L+ + ++ I Sbjct: 540 KETDIVSDLLITTTHHDILFFTNRGRVFVLKAYEIPESGRQAKGTAIINLLAVEADERI 598 >gi|149002587|ref|ZP_01827519.1| DNA gyrase subunit A [Streptococcus pneumoniae SP14-BS69] gi|147759198|gb|EDK66191.1| DNA gyrase subunit A [Streptococcus pneumoniae SP14-BS69] Length = 787 Score = 418 bits (1074), Expect = e-114, Method: Compositional matrix adjust. Identities = 257/706 (36%), Positives = 414/706 (58%), Gaps = 38/706 (5%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 ++N+ V+L ++ ++ YA+S I RA+PD+RDG KPVHRRI++ M+E+G+ K Sbjct: 3 DKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHK 62 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSARI G+V+GK HPHGD S+Y+++VR+AQ + RY L+ G GNFG++DGDSAAA RYTE Sbjct: 63 KSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYTE 122 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 ARM+++A +L+ ++++ VDF D Y+ + EP+V P++FPNLL NG +GIAVGMAT+IP Sbjct: 123 ARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIPP 182 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E +A ++DNPE++ + L+E + GPDFPTG +++ + I ++Y G+G +R Sbjct: 183 HNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVM-GKSGIHKAYETGKGSIVLR 241 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312 +R +E G IVVTE PY V K+++ E I L+ KRI + +RDES E VR V Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 + K R ++++ ++F ++ M+T F NM + G +P+++ L IL ++ H++EV+ Sbjct: 302 IEVK-RDASANVILNNLFKMTQMQTNFGFNMLAIQNG-IPKILSLRQILDAYIEHQKEVV 359 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVD 429 RR+ F + + R IL+GLLIA +IDE+I IIR + + + ++S+F L+E Q Sbjct: 360 VRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSKFKLSERQSQ 419 Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489 AIL++RLR L LE +I+SE D+LLA + +L ++ I E+ EVK FS Sbjct: 420 AILDMRLRRLTGLERDKIQSEYDDLLALIADLADILAKPERVSQIIKDELDEVKRKFSD- 478 Query: 490 TDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSL--------KSHSVDL 540 +RRT E+ +L+ + +IE+ + + +SNRG+I+ L K + Sbjct: 479 ----KRRT---ELMIGQVLSLEDEDLIEESDVLITLSNRGYIKRLDQDEFTAQKRGGRGV 531 Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS-GR-GHGEAIQLLIDLNH 598 K+ D ++ + T D +L + G+ Y L + GR G + L+ L+ Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDE 591 Query: 599 NQDIVTAFVYDS----TCKLLVVSSKGNAFIVEESEI--IANTRK-GKTFLKVSSEEKMK 651 ++ I T +S L + G IV+ + + AN R+ G L + E+++ Sbjct: 592 DESIQTVINVESDRSDDAYLFFTTRHG---IVKRTSVKEFANIRQNGLKALNLKDEDELI 648 Query: 652 LVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSR-GKGVRLQSYKDG 695 V+ GD ++G + F+ + MSR GV+ + ++G Sbjct: 649 NVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMSRIATGVKGVNLREG 694 >gi|46199292|ref|YP_004959.1| DNA gyrase subunit A [Thermus thermophilus HB27] gi|46196917|gb|AAS81332.1| DNA gyrase subunit A [Thermus thermophilus HB27] Length = 805 Score = 418 bits (1074), Expect = e-114, Method: Compositional matrix adjust. Identities = 265/751 (35%), Positives = 428/751 (56%), Gaps = 50/751 (6%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 V V + L++ ++ YA+S I +RA+PD+RDG KPV RRI+ + G+ G KS Sbjct: 3 QVLPVEITEELKQSFINYAMSVIVDRALPDVRDGLKPVQRRILFGAYQEGVLPGRKHVKS 62 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 A+IVGEV+GK HPHGD ++YD+LVR+AQP+ RYPLI GQGNFG+IDGD AA RYTEAR Sbjct: 63 AKIVGEVMGKYHPHGDAAIYDALVRMAQPWNLRYPLIDGQGNFGSIDGDPPAAQRYTEAR 122 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 ++ + +L +D+D VDFR Y+ EP V P+ PNLL NG SGIAVGMATS+P HN Sbjct: 123 LSPIGAEMLLDIDKDTVDFRPNYDGSLKEPEVLPAAIPNLLVNGASGIAVGMATSLPPHN 182 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 + E+ +A +A+I+NP I++E+++ ++ GPDFPTGG + S++ I E+Y GRG +VRA+ Sbjct: 183 LSEVVDALVAMIENPAITLEEVMRHLPGPDFPTGGKL--SKKGIKEAYATGRGSLKVRAK 240 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLF 314 VEE G+ +VVTEIPYQV K+ LI +IA L+ AK+I + +RDES + +RI + Sbjct: 241 VRVEEKGQ-RPVLVVTEIPYQVNKASLIAQIAALVKAKKIEDIVGLRDESDRQGLRIAIE 299 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K R +P +++ ++ + ++T F +N+ + G P+V+ L +++ +L HR+EV+ R Sbjct: 300 LK-RGANPQVVLNQLYKHTALQTSFTVNLLAIVDGE-PKVLSLLDLMRHYLDHRKEVVRR 357 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDKPKP--VMVSRFSLTENQVDAI 431 RS F ++ + R +L+GLLIA +IDE+IA+IR +ED PK ++ RF L+E Q AI Sbjct: 358 RSLFELRKAEERAHVLEGLLIALDHIDEVIALIRGSEDAPKARIALMERFGLSEAQAQAI 417 Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491 L++RL+ L LE ++ E L+ E ++ ++L + ++ ++ VKE + + Sbjct: 418 LDMRLQRLVALEREKLLEEYRGLMEEIARLKAILEDEARLLAEVKADLLRVKEKYGDA-- 475 Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DLSAL 543 RRT E ++ + +IE EP+ + ++ +G+++ L S L A Sbjct: 476 ---RRTLITEF---EETFNPEDLIEDEPMVITLTAQGFLKRLPLESYRAQGRGGKGLLAG 529 Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQD 601 KE D A D +LL + G+ Y L L + + G ++ L+ L +++ Sbjct: 530 RTKEEDEATHVFVADAHDDLLLFTNRGRVYRLKVYELPEMGRQARGVHVKSLLPLAEDEE 589 Query: 602 IVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKT-FLKVSSEEKMKLV---V 654 + D L+ + +G +V+ + + G+ + + +E +LV + Sbjct: 590 VAALLSVRGLDQEGHLVFATERG---LVKRTALKEYQNLGQAGLIAIRLQEGDRLVGVAL 646 Query: 655 KVTGDHVAVVGENRKLLIFSIDQIPEMSRGK----GVRLQSYKDGGISDVICFKICEGLT 710 D + + + + F ++++ R GVR + +D +S ++ K E + Sbjct: 647 SDPEDEAILATQEGQAIRFPLEEVRATGRDTQGVIGVRFKKPEDRVVS-LVVVKPGEMVD 705 Query: 711 WIDSAGRSYNR----SENDLLGWLGKRGGVG 737 + + R Y + SE L G RGG+G Sbjct: 706 LLSVSTRGYGKRTPLSEYPLQG----RGGMG 732 >gi|313902778|ref|ZP_07836175.1| DNA gyrase subunit A [Thermaerobacter subterraneus DSM 13965] gi|313466898|gb|EFR62415.1| DNA gyrase subunit A [Thermaerobacter subterraneus DSM 13965] Length = 810 Score = 418 bits (1074), Expect = e-114, Method: Compositional matrix adjust. Identities = 239/620 (38%), Positives = 367/620 (59%), Gaps = 30/620 (4%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 V + +++ Y+ YA+S I RA+PD+RDG KPVHRRI+ AM E G FKKSAR V Sbjct: 12 VDIEEEMKQSYIDYAMSVIVNRALPDVRDGLKPVHRRILFAMREGGNTPDKPFKKSARTV 71 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+V+GK HPHGD +VYD+LVR+AQ F RYPLI G GNFG+IDGD AA RYTEAR++ + Sbjct: 72 GDVLGKYHPHGDAAVYDALVRMAQDFSMRYPLIEGHGNFGSIDGDPPAAMRYTEARLSPL 131 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A +++ +D+D VDF ++E + EP V P++FPNLL NG +GIAVGMAT+IP HN++E Sbjct: 132 AMELMRDLDKDTVDFVPNFDETEQEPAVLPARFPNLLVNGAAGIAVGMATNIPPHNLREA 191 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 + + LID P+ + L++ I GPDFPTGGIIV RE I ++Y GRG +RA +E Sbjct: 192 IDGVIHLIDYPDATDRDLMKVIKGPDFPTGGIIV-GREGIRQAYTTGRGIITIRAHAQIE 250 Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319 G IVVTEIPY+V KS++IEKIAEL+ +RI + D+RDE+ V+ R Sbjct: 251 TAASGKARIVVTEIPYEVTKSKIIEKIAELVQERRIEGITDLRDETDRSGLRVVIELARG 310 Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379 +P++++ ++ + M+ + + L G+ P+V+ L +L+ +L H+++V+ RR+ Sbjct: 311 ANPNVILNQLYKFTPMQVSYGIIQLALVDGQ-PRVLTLKQLLRHYLDHQKDVIVRRTRHD 369 Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAILNLRL 436 + + R IL+GL IA +ID +I +IR D+ + ++ F+LTE Q AIL++RL Sbjct: 370 LAKAEARAHILEGLRIALDHIDAVITLIRQSRTVDEARTGLMENFNLTEKQAQAILDMRL 429 Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496 + L LE +++ E LL E E + ++LNS K + I E+ E+++ F RR Sbjct: 430 QRLTGLEREKVEEEYQELLKEIEYLRAVLNSEKMVLDIIKQELGEIRDRFGDD-----RR 484 Query: 497 TTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKE 547 T A A + + +I +E + + +++RG+I RS + ++ + +E Sbjct: 485 TKIV----AGAAEFEVEDLIAEEDVVITLTHRGYIKRLPVDTYRSQRRGGRGITGIQTRE 540 Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTA 605 D + A T + +L + GK Y + S G A+ LI++ ++ VTA Sbjct: 541 EDFVSQLFIATTHENLLFFTNRGKVYHRRVHEVPEASRTARGTAVVNLIEIGQDEQ-VTA 599 Query: 606 FV----YDSTCKLLVVSSKG 621 + + LL+ + +G Sbjct: 600 VIPVRDFGEDRDLLMCTRRG 619 >gi|296120380|ref|YP_003628158.1| DNA topoisomerase (ATP-hydrolyzing) [Planctomyces limnophilus DSM 3776] gi|296012720|gb|ADG65959.1| DNA topoisomerase (ATP-hydrolyzing) [Planctomyces limnophilus DSM 3776] Length = 781 Score = 418 bits (1074), Expect = e-114, Method: Compositional matrix adjust. Identities = 259/697 (37%), Positives = 398/697 (57%), Gaps = 51/697 (7%) Query: 29 RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM-SEMGLDFGAAFKKSARIVGEVIGKLH 87 RYL YA+S I+ RA+PD+RDG KPV RRI++ M E+ L A +K A+I G+ G H Sbjct: 21 RYLNYAMSVIQSRALPDVRDGLKPVQRRILYVMYEELRLMADAKTRKCAKISGDTTGNYH 80 Query: 88 PHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGV 147 PHG+QSVYD+LVRLAQ F RYPL+ GQGNFG+I G AAA RYTEAR+T +AE ++ + Sbjct: 81 PHGNQSVYDTLVRLAQDFTLRYPLVDGQGNFGSIMGLPAAAERYTEARLTGIAEQLMNEL 140 Query: 148 DEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALI 207 D V+ R Y+ EPVV P++FPNLL NGT+GIAVGMAT++P HN++E+ EA + LI Sbjct: 141 RFDTVEMRPNYDGTRKEPVVLPTRFPNLLVNGTAGIAVGMATNMPPHNLKEVLEACIHLI 200 Query: 208 DNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSW- 266 NPE S ++LL++I GPDFP GG ++ R++++ Y GRG F+VRA W +++ R Sbjct: 201 TNPEASTKELLKFIKGPDFPLGGRMITDRKAMLPIYEEGRGAFKVRAEWRMDKEKRAEVE 260 Query: 267 -CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFPKNRSLDPD 323 +V+ +PY V+ L+ +I +I ++++P L + DE+ + +R+VL K S DP+ Sbjct: 261 DRVVIYSVPYGVETGPLLAEIGNVIASRKLPQLINAADETDDKHGLRVVLELKKGS-DPE 319 Query: 324 LLMESIFMLSDMETRFPLNMNVL---SMGRV-PQVMPLDGILKEWLAHRREVLFRRSSFR 379 +M ++ + +E F N VL G + P +PL +L E+L R +V+ +R F+ Sbjct: 320 SVMAFLYKKTPLEQNFNYNSTVLIPDDQGLLTPARLPLHRLLGEFLKFRLKVVKKRFQFQ 379 Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVDAILNLRL 436 + + R+ IL+GL I + ID+ I IIRN + + +++ F L E Q AIL ++L Sbjct: 380 LDQLQARIHILRGLEIIFNGIDKAIKIIRNSNGKRDACDKLMAAFPLDEPQTMAILEMQL 439 Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496 + +LE + +EL+ E ++I +L + WN I E+RE+ E F +RR Sbjct: 440 YRISQLEIDTVLAELNTKQKEADRITRILAKDDRIWNVIEGELRELSEQFGD-----KRR 494 Query: 497 TTFC---EVSRADKATLQQAMIEKEPITVVISNRGWIRSL-KSHSVDLSALHFKEGDSLK 552 TT EV+ D++ I +E VV+S GWI+ + + SV+ + +EGD + Sbjct: 495 TTLGSSDEVTEFDES----HYIVRENTNVVLSKDGWIKRVGRLQSVE--STRVREGDQVL 548 Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD--- 609 L T D ++ ++DG AYT+P + G+GE + ++ A D Sbjct: 549 DVLPGSTVDHVIFFASDGIAYTMPISQVPVSSGYGEPLTKHYKFKDGVQVIAAVTTDPRF 608 Query: 610 -------------STCKLLVVSSKGNAFIVEESEI-IANTRKGKTFLKVSSEE---KMKL 652 + L V +++G V A+TR G+ F K+ + K++L Sbjct: 609 TAVAEETAEGAEPAPPHLFVTTAQGQVMRVPLQPFRTASTRSGRKFCKLQEGDVVAKVEL 668 Query: 653 VVKVTGDHVAVVGENRKLLIFSIDQIPEMS-RGKGVR 688 +V T V +V +L+ FS+++IP +S GKGVR Sbjct: 669 IVDQTS--VFLVTREARLIHFSLEEIPVLSGAGKGVR 703 >gi|148998650|ref|ZP_01826089.1| DNA gyrase subunit A [Streptococcus pneumoniae SP11-BS70] gi|149019212|ref|ZP_01834574.1| DNA gyrase subunit A [Streptococcus pneumoniae SP23-BS72] gi|168493141|ref|ZP_02717284.1| DNA gyrase, A subunit [Streptococcus pneumoniae CDC3059-06] gi|168577201|ref|ZP_02723010.1| DNA gyrase, A subunit [Streptococcus pneumoniae MLV-016] gi|221231915|ref|YP_002511067.1| DNA gyrase subunit A [Streptococcus pneumoniae ATCC 700669] gi|225854686|ref|YP_002736198.1| DNA gyrase subunit A [Streptococcus pneumoniae JJA] gi|307067869|ref|YP_003876835.1| type IIA topoisomerase subunit A [Streptococcus pneumoniae AP200] gi|4138535|emb|CAA06715.1| DNA gyrase subunit A [Streptococcus pneumoniae] gi|73916128|gb|AAZ92932.1| DNA gyrase subunit A [Streptococcus pneumoniae] gi|73916138|gb|AAZ92937.1| DNA gyrase subunit A [Streptococcus pneumoniae] gi|73916188|gb|AAZ92962.1| DNA gyrase subunit A [Streptococcus pneumoniae] gi|73916190|gb|AAZ92963.1| DNA gyrase subunit A [Streptococcus pneumoniae] gi|73916200|gb|AAZ92968.1| DNA gyrase subunit A [Streptococcus pneumoniae] gi|73916210|gb|AAZ92973.1| DNA gyrase subunit A [Streptococcus pneumoniae] gi|147755487|gb|EDK62535.1| DNA gyrase subunit A [Streptococcus pneumoniae SP11-BS70] gi|147931082|gb|EDK82061.1| DNA gyrase subunit A [Streptococcus pneumoniae SP23-BS72] gi|183576584|gb|EDT97112.1| DNA gyrase, A subunit [Streptococcus pneumoniae CDC3059-06] gi|183577212|gb|EDT97740.1| DNA gyrase, A subunit [Streptococcus pneumoniae MLV-016] gi|220674375|emb|CAR68925.1| DNA gyrase subunit A [Streptococcus pneumoniae ATCC 700669] gi|225723522|gb|ACO19375.1| DNA gyrase, A subunit [Streptococcus pneumoniae JJA] gi|301801924|emb|CBW34648.1| DNA gyrase subunit A [Streptococcus pneumoniae INV200] gi|306409406|gb|ADM84833.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit [Streptococcus pneumoniae AP200] gi|332200667|gb|EGJ14739.1| DNA gyrase, A subunit [Streptococcus pneumoniae GA41317] Length = 822 Score = 418 bits (1074), Expect = e-114, Method: Compositional matrix adjust. Identities = 257/706 (36%), Positives = 414/706 (58%), Gaps = 38/706 (5%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 ++N+ V+L ++ ++ YA+S I RA+PD+RDG KPVHRRI++ M+E+G+ K Sbjct: 3 DKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHK 62 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSARI G+V+GK HPHGD S+Y+++VR+AQ + RY L+ G GNFG++DGDSAAA RYTE Sbjct: 63 KSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYTE 122 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 ARM+++A +L+ ++++ VDF D Y+ + EP+V P++FPNLL NG +GIAVGMAT+IP Sbjct: 123 ARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIPP 182 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E +A ++DNPE++ + L+E + GPDFPTG +++ + I ++Y G+G +R Sbjct: 183 HNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVM-GKSGIHKAYETGKGSIVLR 241 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312 +R +E G IVVTE PY V K+++ E I L+ KRI + +RDES E VR V Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 + K R ++++ ++F ++ M+T F NM + G +P+++ L IL ++ H++EV+ Sbjct: 302 IEVK-RDASANVILNNLFKMTQMQTNFGFNMLAIQNG-IPKILSLRQILDAYIEHQKEVV 359 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVD 429 RR+ F + + R IL+GLLIA +IDE+I IIR + + + ++S+F L+E Q Sbjct: 360 VRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSKFKLSERQSQ 419 Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489 AIL++RLR L LE +I+SE D+LLA + +L ++ I E+ EVK FS Sbjct: 420 AILDMRLRRLTGLERDKIQSEYDDLLALIADLADILAKPERVSQIIKDELDEVKRKFSD- 478 Query: 490 TDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSL--------KSHSVDL 540 +RRT E+ +L+ + +IE+ + + +SNRG+I+ L K + Sbjct: 479 ----KRRT---ELMVGQILSLEDEDLIEESDVLITLSNRGYIKRLDQDEFTAQKRGGRGV 531 Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS-GR-GHGEAIQLLIDLNH 598 K+ D ++ + T D +L + G+ Y L + GR G + L+ L+ Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDE 591 Query: 599 NQDIVTAFVYDS----TCKLLVVSSKGNAFIVEESEI--IANTRK-GKTFLKVSSEEKMK 651 ++ I T +S L + G IV+ + + AN R+ G L + E+++ Sbjct: 592 DESIQTVINVESDRSDDAYLFFTTRHG---IVKRTSVKEFANIRQNGLKALNLKDEDELI 648 Query: 652 LVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSR-GKGVRLQSYKDG 695 V+ GD ++G + F+ + MSR GV+ + ++G Sbjct: 649 NVLLTEGDMDIIIGTKFGYAVRFNQSAVRGMSRIATGVKGVNLREG 694 >gi|73916136|gb|AAZ92936.1| DNA gyrase subunit A [Streptococcus pneumoniae] Length = 822 Score = 418 bits (1074), Expect = e-114, Method: Compositional matrix adjust. Identities = 258/706 (36%), Positives = 414/706 (58%), Gaps = 38/706 (5%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 ++N+ V+L ++ ++ YA+S I RA+PD+RDG KPVHRRI++ M+E+G+ K Sbjct: 3 DKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHK 62 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSARI G+V+GK HPHGD S+Y+++VR+AQ + RY L+ G GNFG++DGDSAAA RYTE Sbjct: 63 KSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYTE 122 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 ARM+++A +L+ ++++ VDF D Y+ + EP+V P++FPNLL NG +GIAVGMAT+IP Sbjct: 123 ARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIPP 182 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E +A ++DNPE++ + L+E + GPDFPTG +++ + I ++Y G+G +R Sbjct: 183 HNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVM-GKSGIHKAYETGKGSIVLR 241 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312 +R +E G IVVTE PY V K+++ E I L+ KRI + +RDES E VR V Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 + K R ++++ ++F ++ M+T F NM + G +P+++ L IL ++ H++EV+ Sbjct: 302 IEVK-RDASANVILNNLFKMTQMQTNFGFNMLAIQNG-IPKILSLRQILDAYIEHQKEVV 359 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVD 429 RR+ F + + R IL+GLLIA +IDE+I IIR + + + ++S+F L+E Q Sbjct: 360 VRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSKFKLSERQSQ 419 Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489 AIL++RLR L LE +I+SE D+LLA + +L ++ I E+ EVK FS Sbjct: 420 AILDMRLRRLTGLERDKIQSEYDDLLALIADLADILAKPERVSQIIKDELDEVKRKFSD- 478 Query: 490 TDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSL--------KSHSVDL 540 +RRT E+ +L+ + +IE+ + + +SNRG+I+ L K + Sbjct: 479 ----KRRT---ELMVGQVLSLEDEDLIEELDVLITLSNRGYIKRLDQDEFTAQKRGGRGV 531 Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS-GR-GHGEAIQLLIDLNH 598 K+ D ++ + T D +L + G+ Y L + GR G + L+ L+ Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEHGRTAKGLPVVNLLKLDE 591 Query: 599 NQDIVTAFVYDSTCK----LLVVSSKGNAFIVEESEI--IANTRK-GKTFLKVSSEEKMK 651 ++ I T +S L + G IV+ + I AN R+ G L + E+++ Sbjct: 592 DESIQTVINVESDSSDDAYLFFTTRHG---IVKRTSIKEFANIRQNGLKALNLKDEDELI 648 Query: 652 LVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSR-GKGVRLQSYKDG 695 V+ GD ++G + F+ + MSR GV+ + ++G Sbjct: 649 NVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMSRIATGVKGVNLREG 694 >gi|148993829|ref|ZP_01823231.1| DNA gyrase subunit A [Streptococcus pneumoniae SP9-BS68] gi|149007122|ref|ZP_01830791.1| DNA gyrase, A subunit [Streptococcus pneumoniae SP18-BS74] gi|168489047|ref|ZP_02713246.1| DNA gyrase, A subunit [Streptococcus pneumoniae SP195] gi|169833929|ref|YP_001694651.1| DNA gyrase subunit A [Streptococcus pneumoniae Hungary19A-6] gi|225859001|ref|YP_002740511.1| DNA gyrase subunit A [Streptococcus pneumoniae 70585] gi|307127192|ref|YP_003879223.1| DNA gyrase subunit A [Streptococcus pneumoniae 670-6B] gi|73916162|gb|AAZ92949.1| DNA gyrase subunit A [Streptococcus pneumoniae] gi|73916164|gb|AAZ92950.1| DNA gyrase subunit A [Streptococcus pneumoniae] gi|73916166|gb|AAZ92951.1| DNA gyrase subunit A [Streptococcus pneumoniae] gi|73916168|gb|AAZ92952.1| DNA gyrase subunit A [Streptococcus pneumoniae] gi|147761426|gb|EDK68392.1| DNA gyrase, A subunit [Streptococcus pneumoniae SP18-BS74] gi|147927654|gb|EDK78679.1| DNA gyrase subunit A [Streptococcus pneumoniae SP9-BS68] gi|168996431|gb|ACA37043.1| DNA gyrase, A subunit [Streptococcus pneumoniae Hungary19A-6] gi|183572398|gb|EDT92926.1| DNA gyrase, A subunit [Streptococcus pneumoniae SP195] gi|225720597|gb|ACO16451.1| DNA gyrase, A subunit [Streptococcus pneumoniae 70585] gi|306484254|gb|ADM91123.1| DNA gyrase, A subunit [Streptococcus pneumoniae 670-6B] gi|332073556|gb|EGI84035.1| DNA gyrase, A subunit [Streptococcus pneumoniae GA17570] gi|332074551|gb|EGI85025.1| DNA gyrase, A subunit [Streptococcus pneumoniae GA17545] gi|332203068|gb|EGJ17136.1| DNA gyrase, A subunit [Streptococcus pneumoniae GA47901] Length = 822 Score = 418 bits (1074), Expect = e-114, Method: Compositional matrix adjust. Identities = 257/706 (36%), Positives = 414/706 (58%), Gaps = 38/706 (5%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 ++N+ V+L ++ ++ YA+S I RA+PD+RDG KPVHRRI++ M+E+G+ K Sbjct: 3 DKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHK 62 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSARI G+V+GK HPHGD S+Y+++VR+AQ + RY L+ G GNFG++DGDSAAA RYTE Sbjct: 63 KSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYTE 122 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 ARM+++A +L+ ++++ VDF D Y+ + EP+V P++FPNLL NG +GIAVGMAT+IP Sbjct: 123 ARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIPP 182 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E +A ++DNPE++ + L+E + GPDFPTG +++ + I ++Y G+G +R Sbjct: 183 HNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVM-GKSGIHKAYETGKGSIVLR 241 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312 +R +E G IVVTE PY V K+++ E I L+ KRI + +RDES E VR V Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 + K R ++++ ++F ++ M+T F NM + G +P+++ L IL ++ H++EV+ Sbjct: 302 IEVK-RDASANVILNNLFKMTQMQTNFGFNMLAIQNG-IPKILSLRQILDAYIEHQKEVV 359 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVD 429 RR+ F + + R IL+GLLIA +IDE+I IIR + + + ++S+F L+E Q Sbjct: 360 VRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSKFKLSERQSQ 419 Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489 AIL++RLR L LE +I+SE D+LLA + +L ++ I E+ EVK FS Sbjct: 420 AILDMRLRRLTGLERDKIQSEYDDLLALIADLADILAKPERVSQIIKDELDEVKRKFSD- 478 Query: 490 TDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSL--------KSHSVDL 540 +RRT E+ +L+ + +IE+ + + +SNRG+I+ L K + Sbjct: 479 ----KRRT---ELMVGQILSLEDEDLIEESDVLITLSNRGYIKRLDQDEFTAQKRGGRGV 531 Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS-GR-GHGEAIQLLIDLNH 598 K+ D ++ + T D +L + G+ Y L + GR G + L+ L+ Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDE 591 Query: 599 NQDIVTAFVYDS----TCKLLVVSSKGNAFIVEESEI--IANTRK-GKTFLKVSSEEKMK 651 ++ I T +S L + G IV+ + + AN R+ G L + E+++ Sbjct: 592 DESIQTVINVESDRSDDAYLFFTTRHG---IVKRTSVKEFANIRQNGLKALNLKDEDELI 648 Query: 652 LVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSR-GKGVRLQSYKDG 695 V+ GD ++G + F+ + MSR GV+ + ++G Sbjct: 649 NVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMSRIATGVKGVNLREG 694 >gi|15901081|ref|NP_345685.1| DNA gyrase subunit A [Streptococcus pneumoniae TIGR4] gi|111657851|ref|ZP_01408566.1| hypothetical protein SpneT_02000974 [Streptococcus pneumoniae TIGR4] gi|149012271|ref|ZP_01833340.1| DNA gyrase subunit A [Streptococcus pneumoniae SP19-BS75] gi|168484884|ref|ZP_02709829.1| DNA gyrase, A subunit [Streptococcus pneumoniae CDC1873-00] gi|225860947|ref|YP_002742456.1| DNA gyrase subunit A [Streptococcus pneumoniae Taiwan19F-14] gi|237649922|ref|ZP_04524174.1| DNA gyrase subunit A [Streptococcus pneumoniae CCRI 1974] gi|237822529|ref|ZP_04598374.1| DNA gyrase subunit A [Streptococcus pneumoniae CCRI 1974M2] gi|298230359|ref|ZP_06964040.1| DNA gyrase subunit A [Streptococcus pneumoniae str. Canada MDR_19F] gi|298254316|ref|ZP_06977902.1| DNA gyrase subunit A [Streptococcus pneumoniae str. Canada MDR_19A] gi|17377446|sp|P72524|GYRA_STRPN RecName: Full=DNA gyrase subunit A gi|14972699|gb|AAK75325.1| DNA gyrase, A subunit [Streptococcus pneumoniae TIGR4] gi|73916148|gb|AAZ92942.1| DNA gyrase subunit A [Streptococcus pneumoniae] gi|73916154|gb|AAZ92945.1| DNA gyrase subunit A [Streptococcus pneumoniae] gi|73916174|gb|AAZ92955.1| DNA gyrase subunit A [Streptococcus pneumoniae] gi|73916178|gb|AAZ92957.1| DNA gyrase subunit A [Streptococcus pneumoniae] gi|73916180|gb|AAZ92958.1| DNA gyrase subunit A [Streptococcus pneumoniae] gi|73916212|gb|AAZ92974.1| DNA gyrase subunit A [Streptococcus pneumoniae] gi|73916218|gb|AAZ92977.1| DNA gyrase subunit A [Streptococcus pneumoniae] gi|147763597|gb|EDK70532.1| DNA gyrase subunit A [Streptococcus pneumoniae SP19-BS75] gi|172041968|gb|EDT50014.1| DNA gyrase, A subunit [Streptococcus pneumoniae CDC1873-00] gi|225728315|gb|ACO24166.1| DNA gyrase, A subunit [Streptococcus pneumoniae Taiwan19F-14] gi|327389455|gb|EGE87800.1| DNA gyrase, A subunit [Streptococcus pneumoniae GA04375] gi|332201683|gb|EGJ15753.1| DNA gyrase, A subunit [Streptococcus pneumoniae GA47368] Length = 822 Score = 417 bits (1073), Expect = e-114, Method: Compositional matrix adjust. Identities = 257/706 (36%), Positives = 414/706 (58%), Gaps = 38/706 (5%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 ++N+ V+L ++ ++ YA+S I RA+PD+RDG KPVHRRI++ M+E+G+ K Sbjct: 3 DKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHK 62 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSARI G+V+GK HPHGD S+Y+++VR+AQ + RY L+ G GNFG++DGDSAAA RYTE Sbjct: 63 KSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYTE 122 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 ARM+++A +L+ ++++ VDF D Y+ + EP+V P++FPNLL NG +GIAVGMAT+IP Sbjct: 123 ARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIPP 182 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E +A ++DNPE++ + L+E + GPDFPTG +++ + I ++Y G+G +R Sbjct: 183 HNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVM-GKSGIHKAYETGKGSIVLR 241 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312 +R +E G IVVTE PY V K+++ E I L+ KRI + +RDES E VR V Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 + K R ++++ ++F ++ M+T F NM + G +P+++ L IL ++ H++EV+ Sbjct: 302 IEVK-RDASANVILNNLFKMTQMQTNFGFNMLAIQNG-IPKILSLRQILDAYIEHQKEVV 359 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVD 429 RR+ F + + R IL+GLLIA +IDE+I IIR + + + ++S+F L+E Q Sbjct: 360 VRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSKFKLSERQSQ 419 Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489 AIL++RLR L LE +I+SE D+LLA + +L ++ I E+ EVK FS Sbjct: 420 AILDMRLRRLTGLERDKIQSEYDDLLALIADLADILAKPERVSQIIKDELDEVKRKFSD- 478 Query: 490 TDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSL--------KSHSVDL 540 +RRT E+ +L+ + +IE+ + + +SNRG+I+ L K + Sbjct: 479 ----KRRT---ELMIGQVLSLEDEDLIEESDVLITLSNRGYIKRLDQDEFTAQKRGGRGV 531 Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS-GR-GHGEAIQLLIDLNH 598 K+ D ++ + T D +L + G+ Y L + GR G + L+ L+ Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDE 591 Query: 599 NQDIVTAFVYDS----TCKLLVVSSKGNAFIVEESEI--IANTRK-GKTFLKVSSEEKMK 651 ++ I T +S L + G IV+ + + AN R+ G L + E+++ Sbjct: 592 DESIQTVINVESDRSDDAYLFFTTRHG---IVKRTSVKEFANIRQNGLKALNLKDEDELI 648 Query: 652 LVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSR-GKGVRLQSYKDG 695 V+ GD ++G + F+ + MSR GV+ + ++G Sbjct: 649 NVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMSRIATGVKGVNLREG 694 >gi|326794746|ref|YP_004312566.1| DNA gyrase subunit alpha [Marinomonas mediterranea MMB-1] gi|326545510|gb|ADZ90730.1| DNA gyrase, A subunit [Marinomonas mediterranea MMB-1] Length = 881 Score = 417 bits (1073), Expect = e-114, Method: Compositional matrix adjust. Identities = 265/736 (36%), Positives = 408/736 (55%), Gaps = 86/736 (11%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 VS+ L+ YL YA+S I RA+PD+RDG KPVHRR+++AM+E+ D+ +KKSARIV Sbjct: 11 VSIENELKGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNELKNDWNKPYKKSARIV 70 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGD +VY+++VR+AQPF RY L+ GQGNFG++DGDSAAA RYTE RM ++ Sbjct: 71 GDVIGKYHPHGDSAVYETIVRMAQPFSMRYTLVDGQGNFGSVDGDSAAAMRYTEIRMDKI 130 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 + +L ++++ VDF Y+E ++ P V P++ P LL NG++GIAVGMAT+IP HN+ E+ Sbjct: 131 SHHLLMDLEKETVDFVPNYDESETMPEVLPARIPGLLVNGSAGIAVGMATNIPPHNLTEV 190 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 LALID PEI I++L+E+I GPDFPTG I R IVE+Y+ GRG +RAR VE Sbjct: 191 INGCLALIDRPEIEIDELMEFIPGPDFPTGAFI-NGRAGIVEAYKTGRGRIYMRARHHVE 249 Query: 260 EVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318 ++ +G+ IV TEIPYQ+ K+++IEKIAEL+ K++ + ++RDES +D ++ R Sbjct: 250 DMEKGNRQAIVFTEIPYQLNKAKVIEKIAELVKEKKLEGISELRDESDKDGMRIVIELRR 309 Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378 +PD+++ +IF + +++ F +NM L GR P+++ L IL+ ++ HRREV+ RR+ F Sbjct: 310 GENPDVVVNNIFTQTQLQSVFGINMVALVDGR-PELLNLKQILECFVRHRREVVTRRTIF 368 Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED--------------KPKPVMV------ 418 ++ R IL+GL +A NID +I +IR +P VM Sbjct: 369 ELRKARERGHILEGLAVALANIDRVIELIRTSPSSAEAREKLIAESWQPGDVMAMLERAG 428 Query: 419 -----------------SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKI 461 + L+ +Q AIL+LRL L LE ++ SE +L+A ++ Sbjct: 429 ADACRPDDLDPQFGFNNGAYRLSPDQAQAILDLRLHRLTGLEHEKLLSEYKDLIAVIAEL 488 Query: 462 DSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPIT 521 +L + + I E+ V++ F G R T SR D +I++ P+ Sbjct: 489 LEILGNPTRLMEVICEELEAVRDQF------GDERLTEILTSRQDLTIAD--LIDEAPMV 540 Query: 522 VVISNRGWIRS--LKSHSVDL------SALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573 V IS+ G+ +S L+ + S+ K+ D + L + D ++L S GK Y Sbjct: 541 VTISDTGYAKSQPLEEYKAQRRGGRGKSSATMKDEDHISHLLVTSSHDTVMLFSNFGKVY 600 Query: 574 TL---------------PAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVS 618 L P NLL GE I L+ L N ++ ++++ +T V Sbjct: 601 WLRVFEIPVASRTAKGRPIVNLLP-LAEGEHISALLPL--NDEMEDSYIFMATANGTVKK 657 Query: 619 SKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQ 677 + F S G L + +++ V + +G++ + +V + K + F Sbjct: 658 TAVEYFARPRS-------TGLIALSLDENDELVGVAQTSGENDIMLVSSSGKTIRFKESD 710 Query: 678 IPEMSRG----KGVRL 689 + M R +G+RL Sbjct: 711 VRAMGRTAAGVRGIRL 726 >gi|281601673|gb|ADA74657.1| DNA gyrase subunit A [Shigella flexneri 2002017] Length = 875 Score = 417 bits (1073), Expect = e-114, Method: Compositional matrix adjust. Identities = 257/659 (38%), Positives = 381/659 (57%), Gaps = 65/659 (9%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + V++ L+ YL YA+S I RA+PD+RDG KPVHRR+++AM+ +G D+ A+KKSA Sbjct: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG+IDGDSAAA RYTE R+ Sbjct: 68 RVVGDVIGKYHPHGDLAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 ++A ++ ++++ VDF D Y+ + P V P+K PNLL NG+SGIAVGMAT+IP HN+ Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ LA ID+ +ISIE L+EYI GPDFPT II R I E+YR GRG +RAR Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEYIPGPDFPTAAII-NGRRGIEEAYRTGRGKVYIRARA 246 Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314 VE + G I+V EIPYQV K+RLIEKIAEL+ KR+ + +RDES +D +RIV+ Sbjct: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K ++ ++++ +++ + ++ F +NM L G+ P++M L I+ ++ HRREV+ R Sbjct: 307 VKRDAVG-EVVLNNLYSQTQLQVSFGINMVALHHGQ-PKIMNLKDIIAAFVRHRREVVTR 364 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----------- 420 R+ F ++ R IL+ L +A NID II +IR+ P K +V+ Sbjct: 365 RTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAML 424 Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457 + LTE Q AIL+LRL+ L LE ++ E LL + Sbjct: 425 ERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQ 484 Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517 ++ +L S + I E+ V+E F G +R T + AD + +I + Sbjct: 485 IAELLRILGSADRLMEVIREELELVREQF------GDKRRTEITANSADINL--EDLITQ 536 Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569 E + V +S++G+++ + + SA KE D + L A+T D IL S+ Sbjct: 537 EDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSR 596 Query: 570 GKAYTLPAGNLLSG-RG-HGEAIQLLIDLNHNQDIVTAFV----YDSTCKLLVVSSKGN 622 G+ Y++ L RG G I L+ L ++ I TA + ++ K+ + ++ G Sbjct: 597 GRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERI-TAILPVTEFEEGVKVFMATANGT 654 >gi|89074076|ref|ZP_01160577.1| putative DNA topoisomerase (ATP-hydrolyzing) [Photobacterium sp. SKA34] gi|89050214|gb|EAR55725.1| putative DNA topoisomerase (ATP-hydrolyzing) [Photobacterium sp. SKA34] Length = 887 Score = 417 bits (1073), Expect = e-114, Method: Compositional matrix adjust. Identities = 261/691 (37%), Positives = 391/691 (56%), Gaps = 77/691 (11%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + +++ L+ YL YA+S I RA+PD+RDG KPVHRR++ AM+ +G D+ A+KKSA Sbjct: 8 ITPINIEDELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKKSA 67 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG+IDGDSAAA RYTE RM Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVRM 127 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 +++A +L +D++ VD+ Y+ + P V P+K PNLL NG+SGIAVGMAT+IP HN+ Sbjct: 128 SKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ LA I++ +I+I++L+EYI GPDFPT +I R+ I+++Y GRG +RA+ Sbjct: 188 GEVINGCLAYINDEDITIDQLMEYIPGPDFPTAAMI-SGRKGIIDAYHTGRGKVYMRAKA 246 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFP 315 +E G I+V EIPYQV K+RLIEKIAEL+ K++ + +RDES +D +RIV+ Sbjct: 247 DIEVEKNGKETIIVHEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIEC 306 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 K ++ ++++ +++ + ++T F +NM L G+ P++ L +LK ++ HRREV+ RR Sbjct: 307 KRDAVG-EVVLNNLYAQTQLQTTFGINMVALDNGQ-PKIFNLKEMLKCFVNHRREVVTRR 364 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR------------ 420 + + ++ R IL+GL +A NIDEII +IR P K +++R Sbjct: 365 TIYELRKARDRAHILEGLALALANIDEIIELIRRAPTPAEAKAGLIARGWDLGNVSAMLE 424 Query: 421 ----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458 + LTE Q AIL+LRL L LE +I E LL E Sbjct: 425 RAGTDAARPEWLEEQFGIRDNQYFLTEQQAQAILDLRLHKLTGLEHEKILEEYKALLDEI 484 Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518 ++ +L+S + I E+ VKE F+ RRT E++ A + +I +E Sbjct: 485 AELMYILSSSDRLMEVIREELELVKEQFNDE-----RRT---EITAASHDIDLEDLITQE 536 Query: 519 PITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570 + V +S+ G+++ + + +A KE D ++ L A+T D IL S+ G Sbjct: 537 DVVVTLSHEGYVKYQILSDYEAQRRGGKGKAATRMKEEDFIERLLVANTHDTILCFSSRG 596 Query: 571 -----KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVT----------AFVYDSTCKLL 615 K Y LP L S G+ I ++ L N+ I FV+ +T Sbjct: 597 RMYWLKVYQLP---LASRTARGKPIVNILPLEENERITAILPVREYTEDKFVFMATADGT 653 Query: 616 VVSSKGNAFIVEESE--IIANTRKGKTFLKV 644 V + F S I N R+G + + V Sbjct: 654 VKKTPLTDFSRPRSAGIIAVNLREGDSLIGV 684 >gi|73916146|gb|AAZ92941.1| DNA gyrase subunit A [Streptococcus pneumoniae] Length = 822 Score = 417 bits (1073), Expect = e-114, Method: Compositional matrix adjust. Identities = 257/706 (36%), Positives = 414/706 (58%), Gaps = 38/706 (5%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 ++N+ V+L ++ ++ YA+S I RA+PD+RDG KPVHRRI++ M+E+G+ K Sbjct: 3 DKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDXPHK 62 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSARI G+V+GK HPHGD S+Y+++VR+AQ + RY L+ G GNFG++DGDSAAA RYTE Sbjct: 63 KSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYTE 122 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 ARM+++A +L+ ++++ VDF D Y+ + EP+V P++FPNLL NG +GIAVGMAT+IP Sbjct: 123 ARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIPP 182 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E +A ++DNPE++ + L+E + GPDFPTG +++ + I ++Y G+G +R Sbjct: 183 HNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVM-GKSGIHKAYETGKGSIVLR 241 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312 +R +E G IVVTE PY V K+++ E I L+ KRI + +RDES E VR V Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 + K R ++++ ++F ++ M+T F NM + G +P+++ L IL ++ H++EV+ Sbjct: 302 IEVK-RDASANVILNNLFKMTQMQTNFGFNMLAIQNG-IPKILSLRQILDAYIEHQKEVV 359 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVD 429 RR+ F + + R IL+GLLIA +IDE+I IIR + + + ++S+F L+E Q Sbjct: 360 VRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSKFKLSERQSQ 419 Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489 AIL++RLR L LE +I+SE D+LLA + +L ++ I E+ EVK FS Sbjct: 420 AILDMRLRRLTGLERDKIQSEYDDLLALIADLADILAKPERVSQIIKDELDEVKRKFSD- 478 Query: 490 TDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSL--------KSHSVDL 540 +RRT E+ +L+ + +IE+ + + +SNRG+I+ L K + Sbjct: 479 ----KRRT---ELMVGQILSLEDEDLIEESDVLITLSNRGYIKRLDQDEFTAQKRGGRGV 531 Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS-GR-GHGEAIQLLIDLNH 598 K+ D ++ + T D +L + G+ Y L + GR G + L+ L+ Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDE 591 Query: 599 NQDIVTAFVYDS----TCKLLVVSSKGNAFIVEESEI--IANTRK-GKTFLKVSSEEKMK 651 ++ I T +S L + G IV+ + + AN R+ G L + E+++ Sbjct: 592 DESIQTVINVESDRSDDAYLFFTTRHG---IVKRTSVKEFANIRQNGLKALNLKDEDELI 648 Query: 652 LVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSR-GKGVRLQSYKDG 695 V+ GD ++G + F+ + MSR GV+ + ++G Sbjct: 649 NVLLTEGDMDIIIGTKFGYAVRFNQSAVRGMSRIATGVKGVNLREG 694 >gi|330829610|ref|YP_004392562.1| DNA gyrase subunit A [Aeromonas veronii B565] gi|328804746|gb|AEB49945.1| DNA gyrase, A subunit [Aeromonas veronii B565] Length = 915 Score = 417 bits (1073), Expect = e-114, Method: Compositional matrix adjust. Identities = 248/605 (40%), Positives = 355/605 (58%), Gaps = 56/605 (9%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + V++ L+ YL YA+S I RA+PD+RDG KPVHRR++ AM+E+G D+ +KKSA Sbjct: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELGNDWNKPYKKSA 67 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD +VYD++VR+AQ F RY L+ GQGNFG++DGDSAAA RYTE RM Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQDFSMRYMLVDGQGNFGSVDGDSAAAMRYTEVRM 127 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 +++ +L +D++ VD+ Y+ + P V P+K PNLL NG+SGIAVGMAT+IP HN+ Sbjct: 128 ARISHELLADLDKETVDWVPNYDGTEMIPAVMPTKVPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 EI LALI+N +++I++L+ YI GPDFPTGGII R IV++YR GRG VRA+ Sbjct: 188 TEIVNGCLALIENGDLTIDELMTYITGPDFPTGGII-NGRSGIVQAYRTGRGSIYVRAKA 246 Query: 257 CVEEVGRGSW-CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315 VE + S I+V EIPYQV K+RLIEKIAEL+ K+I + +RDES +D ++ Sbjct: 247 EVEVDEKTSRETIIVHEIPYQVNKARLIEKIAELVKEKKIEGISALRDESDKDGMRIVIE 306 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 R ++++ +++ + M+T F +NM L + P+VM L IL +L HRREV+ RR Sbjct: 307 IKRGESGEIVLNNLYKHTQMQTTFGINMVALDNNQ-PKVMNLKEILDAFLLHRREVVTRR 365 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR------------ 420 + F ++ R IL+GL +A NID II +IR+ P K +V++ Sbjct: 366 TVFELRKARDRAHILEGLAVALANIDPIIELIRHSATPADAKAGLVAKGWELGNVAAMLE 425 Query: 421 ----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458 + LTE Q AIL+LRL L LE +I E +LL Sbjct: 426 KAGDDAARPEWLEPEFGIREGQYFLTEQQAQAILDLRLHKLTGLEHEKILEEYQSLLDLI 485 Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518 ++ +L S + I E+ V+E + RRT E+S + + +I E Sbjct: 486 AELLHILASPARLMEVIRDELLAVREQYGDE-----RRT---EISMSSAEINIEDLITPE 537 Query: 519 PITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570 + V +S++G+++ + + SA KE D ++ L A+T D IL ST G Sbjct: 538 DVVVTLSHQGYVKYQPLSDYEAQRRGGRGKSATRIKEEDFVERLLVANTHDTILCFSTRG 597 Query: 571 KAYTL 575 K Y L Sbjct: 598 KVYWL 602 >gi|254701844|ref|ZP_05163672.1| DNA gyrase subunit A [Brucella suis bv. 5 str. 513] Length = 934 Score = 417 bits (1073), Expect = e-114, Method: Compositional matrix adjust. Identities = 257/694 (37%), Positives = 384/694 (55%), Gaps = 61/694 (8%) Query: 2 GVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61 G D+++ ++ +S+ ++ YL YA+S I RA+PD+RDG KPVHRRI+HAM Sbjct: 9 GSDDMNGGPNGGPSGIEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAM 68 Query: 62 SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121 +EM L + ++KSA +VGEV+GK HPHGD S+YD+LVR+AQ F R PLI GQGNFG+I Sbjct: 69 NEMNLAYNRPYRKSAGVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLIDGQGNFGSI 128 Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181 DGD AA RYTE R+ +V E +L +D+D V+F+D Y+ + EPVV P++FPNLL NG+ Sbjct: 129 DGDPPAAMRYTECRLEKVTESLLSDIDKDTVNFQDNYDGREQEPVVLPARFPNLLVNGSG 188 Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241 GIAVGMAT+IP HN+ E+ + +ALIDNP I + +L+E I GPDFPTGGII+ R I Sbjct: 189 GIAVGMATNIPPHNLGEVIDGCVALIDNPAIELSELMELIPGPDFPTGGIIL-GRNGINS 247 Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301 +Y GRG +R R +E + I++TEIPYQV K+ +IEK+AEL+ KRI + D+ Sbjct: 248 AYTTGRGSVIMRGRATIEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKRIDGISDL 307 Query: 302 RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361 RDES + V+ R D+++ ++ + ++T F NM L+ G+ Q+ LD +L Sbjct: 308 RDESDREGYRVVVELKRDAVADVVLNQLYRYTPLQTSFGCNMVALNGGKPEQLTLLD-ML 366 Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP----KPVM 417 + ++A R EV+ RR+ F + R +L GL IA NIDE+IA+IR P + +M Sbjct: 367 RAFVAFREEVVTRRTKFLLNKARDRAHVLVGLAIAVANIDEVIALIRRAPDPATAREQLM 426 Query: 418 VSR-------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELD 452 R ++L+E Q AIL+LRL+ L L ++ EL+ Sbjct: 427 ERRWPAVDVAPLIRLIDDPRHTLNEDNTYNLSEEQARAILDLRLQRLTALGRDEVADELN 486 Query: 453 NLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ 512 + E +L S + N + E+ V++ F+ RRT E+ + Sbjct: 487 KIGEEIRDYLDILGSRLRVMNIVKEEMIAVRDEFATP-----RRT---EIGFGGAEMDDE 538 Query: 513 AMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRIL 564 +I +E + V +S+ G+I R+ + S + KE D + A+T +L Sbjct: 539 DLIAREDMVVTVSHAGYIKRVPLTTYRAQRRGGKGRSGMATKEEDFVTRLFVANTHTPVL 598 Query: 565 LLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY----DSTCKLL 615 S+ G K + LP G S G+A+ ++ L + I T DS L Sbjct: 599 FFSSRGIVYKEKVWRLPVGTPQS---RGKALINMLPLQQGERITTIMPLPEDEDSWANLD 655 Query: 616 VV--SSKGNAFIVEESEIIANTRKGKTFLKVSSE 647 V+ +++G + S+ + R GK +K+ E Sbjct: 656 VMFSTTRGTVRRNKLSDFVQVNRNGKIAMKLEDE 689 >gi|189024253|ref|YP_001935021.1| DNA gyrase subunit A [Brucella abortus S19] gi|237815520|ref|ZP_04594517.1| DNA gyrase, A subunit [Brucella abortus str. 2308 A] gi|254697459|ref|ZP_05159287.1| DNA gyrase subunit A [Brucella abortus bv. 2 str. 86/8/59] gi|254706715|ref|ZP_05168543.1| DNA gyrase subunit A [Brucella pinnipedialis M163/99/10] gi|254710177|ref|ZP_05171988.1| DNA gyrase subunit A [Brucella pinnipedialis B2/94] gi|254714175|ref|ZP_05175986.1| DNA gyrase subunit A [Brucella ceti M644/93/1] gi|254730356|ref|ZP_05188934.1| DNA gyrase subunit A [Brucella abortus bv. 4 str. 292] gi|256031671|ref|ZP_05445285.1| DNA gyrase subunit A [Brucella pinnipedialis M292/94/1] gi|256113656|ref|ZP_05454467.1| DNA gyrase subunit A [Brucella melitensis bv. 3 str. Ether] gi|256159822|ref|ZP_05457559.1| DNA gyrase subunit A [Brucella ceti M490/95/1] gi|189019825|gb|ACD72547.1| DNA gyrase subunit A [Brucella abortus S19] gi|237788818|gb|EEP63029.1| DNA gyrase, A subunit [Brucella abortus str. 2308 A] gi|326409120|gb|ADZ66185.1| DNA gyrase subunit A [Brucella melitensis M28] Length = 934 Score = 417 bits (1073), Expect = e-114, Method: Compositional matrix adjust. Identities = 257/694 (37%), Positives = 384/694 (55%), Gaps = 61/694 (8%) Query: 2 GVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61 G D+++ ++ +S+ ++ YL YA+S I RA+PD+RDG KPVHRRI+HAM Sbjct: 9 GSDDMNGGPNGGPSGIEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAM 68 Query: 62 SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121 +EM L + ++KSA +VGEV+GK HPHGD S+YD+LVR+AQ F R PLI GQGNFG+I Sbjct: 69 NEMNLAYNRPYRKSAGVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLIDGQGNFGSI 128 Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181 DGD AA RYTE R+ +V E +L +D+D V+F+D Y+ + EPVV P++FPNLL NG+ Sbjct: 129 DGDPPAAMRYTECRLEKVTESLLSDIDKDTVNFQDNYDGREQEPVVLPARFPNLLVNGSG 188 Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241 GIAVGMAT+IP HN+ E+ + +ALIDNP I + +L+E I GPDFPTGGII+ R I Sbjct: 189 GIAVGMATNIPPHNLGEVIDGCVALIDNPAIELSELMELIPGPDFPTGGIIL-GRNGINS 247 Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301 +Y GRG +R R +E + I++TEIPYQV K+ +IEK+AEL+ KRI + D+ Sbjct: 248 AYTTGRGSVIMRGRATIEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKRIDGISDL 307 Query: 302 RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361 RDES + V+ R D+++ ++ + ++T F NM L+ G+ Q+ LD +L Sbjct: 308 RDESDREGYRVVVELKRDAVADVVLNQLYRYTPLQTSFGCNMVALNGGKPEQLTLLD-ML 366 Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP----KPVM 417 + ++A R EV+ RR+ F + R +L GL IA NIDE+IA+IR P + +M Sbjct: 367 RAFVAFREEVVTRRTKFLLNKARDRAHVLVGLAIAVANIDEVIALIRRAPDPATAREQLM 426 Query: 418 VSR-------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELD 452 R ++L+E Q AIL+LRL+ L L ++ EL+ Sbjct: 427 ERRWPAVDVAPLIRLIDDPRHTLNEDNTYNLSEEQARAILDLRLQRLTALGRDEVADELN 486 Query: 453 NLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ 512 + E +L S + N + E+ V++ F+ RRT E+ + Sbjct: 487 KIGEEIRDYLDILGSRLRVMNIVKEEMIAVRDEFATP-----RRT---EIGFGGAEMDDE 538 Query: 513 AMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRIL 564 +I +E + V +S+ G+I R+ + S + KE D + A+T +L Sbjct: 539 DLIAREDMVVTVSHAGYIKRVPLTTYRAQRRGGKGRSGMATKEEDFVTRLFVANTHTPVL 598 Query: 565 LLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY----DSTCKLL 615 S+ G K + LP G S G+A+ ++ L + I T DS L Sbjct: 599 FFSSRGIVYKEKVWRLPVGTPQS---RGKALINMLPLQQGERITTIMPLPEDEDSWANLD 655 Query: 616 VV--SSKGNAFIVEESEIIANTRKGKTFLKVSSE 647 V+ +++G + S+ + R GK +K+ E Sbjct: 656 VMFSTTRGTVRRNKLSDFVQVNRNGKIAMKLEDE 689 >gi|92117309|ref|YP_577038.1| DNA gyrase subunit A [Nitrobacter hamburgensis X14] gi|91800203|gb|ABE62578.1| DNA gyrase subunit A [Nitrobacter hamburgensis X14] Length = 913 Score = 417 bits (1073), Expect = e-114, Method: Compositional matrix adjust. Identities = 244/631 (38%), Positives = 355/631 (56%), Gaps = 55/631 (8%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 ++ VS+ ++ YL YA+S I RA+PD RDG KPVHRRI++AM E G ++ ++KS Sbjct: 17 GIRPVSILEEMKRSYLDYAMSVIVARALPDARDGLKPVHRRILYAMYENGFEWNKPYRKS 76 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 AR VG+VIGK HPHGDQSVYD+LVR+AQ F R PLI GQGNFG++DGD AAA RYTE+R Sbjct: 77 ARTVGDVIGKYHPHGDQSVYDALVRMAQGFSMRVPLIDGQGNFGSVDGDMAAAMRYTESR 136 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 +T++A+ +L +D+D VDF+ Y+ + EP V P+KFPNLL NG GIAVGMAT+IP HN Sbjct: 137 LTKIAQSLLDDIDKDTVDFQPNYDNSEKEPSVLPAKFPNLLVNGAGGIAVGMATNIPPHN 196 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 + E+ +A +ALID+P + I+ L+ + GPDFPTGGII+ R+ I +Y LGRG +R + Sbjct: 197 LGEVIDACVALIDDPALGIDDLINIVPGPDFPTGGIIL-GRQGIRSAYHLGRGSIVMRGK 255 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315 +E + I+++EIPYQV K+ ++E+IAEL+ KRI + D+RDES D V+ Sbjct: 256 VAIEPARKDREAIIISEIPYQVNKATMVERIAELVRDKRIEGISDLRDESDRDGFRVVVE 315 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 R P++++ ++ + ++T F NM L GR PQ+M L +L ++A R V+ RR Sbjct: 316 LKRDAVPEVVLNQLYRYTPLQTNFGANMVALDAGR-PQLMNLKDLLTLFIAFRERVVTRR 374 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR------------ 420 + F + R IL GL IA NIDEII +IR P + ++SR Sbjct: 375 TKFLLNKARDRAHILVGLAIAVANIDEIIRVIRESPDPATARDTLMSRDWPARDVAAMIT 434 Query: 421 --------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466 L+ Q AIL+LRL+ L L +I ELD L E +L Sbjct: 435 LIDDPRHRTSPDGTARLSMEQAKAILDLRLQRLTALGREEISEELDKLAIEIADYLDILR 494 Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526 S + I E+ VK F+ R+T E + + +I++E + V +S+ Sbjct: 495 SRARVQAIIKTELGAVKAEFATP-----RKTVILE---QEGEVEDEDLIQREDMVVTVSH 546 Query: 527 RGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---- 574 G++ R+ K S + +E D + A T +L S+ G+ Y Sbjct: 547 AGYVKRVPLSTYRAQKRGGKGRSGMQTREEDFVSRLFVASTHTPVLFFSSRGQVYKEKVW 606 Query: 575 -LPAGNLLSGRGHGEAIQLLIDLNHNQDIVT 604 LP + + G+A+ ++ L + I T Sbjct: 607 RLP---MAAPNARGKAMINILPLEQGERITT 634 >gi|205353389|ref|YP_002227190.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205273170|emb|CAR38131.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] Length = 878 Score = 417 bits (1073), Expect = e-114, Method: Compositional matrix adjust. Identities = 277/747 (37%), Positives = 411/747 (55%), Gaps = 69/747 (9%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + V++ L+ YL YA+S I RA+PD+RDG KPVHRR+++AM+ +G D+ A+KKSA Sbjct: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG+IDGDSAAA RYTE R+ Sbjct: 68 RVVGDVIGKYHPHGDFAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 ++A ++ ++++ VDF D Y+ + P V P+K PNLL NG+SGIAVGMAT+IP HN+ Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ LA IDN +ISIE L+E+I GPDFPT II R I E+YR GRG +RAR Sbjct: 188 TEVINGCLAYIDNEDISIEGLMEHIPGPDFPTAAII-NGRRGIEEAYRTGRGKVYIRARA 246 Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314 VE + G I+V EIPYQV K+RLIEKIAEL+ KR+ + +RDES +D +RIV+ Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKDGMRIVIE 306 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K ++ ++++ +++ + ++ F +NM L G+ P++M L I+ ++ HRREV+ R Sbjct: 307 VKRDAVG-EVVLNNLYSQTQLQVSFGINMVALHHGQ-PKIMNLKDIISAFVRHRREVVTR 364 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----------- 420 R+ F ++ R IL+ L IA NID II +IR P K ++SR Sbjct: 365 RTIFELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAALISRPWDLGNVAAML 424 Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457 + LTE Q AIL+LRL+ L LE ++ E LL + Sbjct: 425 ERAGDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQ 484 Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517 ++ +L S + I E+ +++ F G R T + AD + +I + Sbjct: 485 IAELLHILGSADRLMEVIREEMELIRDQF------GDERRTEITANSADINI--EDLISQ 536 Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569 E + V +S++G+++ + + SA KE D + L A+T D IL S+ Sbjct: 537 EDVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSR 596 Query: 570 GKAYTLPAGNLL-SGRG-HGEAIQLLIDLNHNQDIVTAFV----YDSTCKLLVVSSKGNA 623 G+ Y + L + RG G I L+ L N+ I TA + Y+ + + ++ G Sbjct: 597 GRLYWMKVYQLPEASRGARGRPIVNLLPLEANERI-TAILPVREYEEGVNVFMATASGTV 655 Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMS 682 +E G + ++ +++ V +G D V + K++ F D + M Sbjct: 656 KKTALTEFSRPRSAGIIAVNLNDGDELIGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAMG 715 Query: 683 R-GKGVRLQSYKDGGISDVICFKICEG 708 R GVR K G V+ I G Sbjct: 716 RTATGVR--GIKLAGDDKVVSLIIPRG 740 >gi|58582029|ref|YP_201045.1| DNA gyrase subunit A [Xanthomonas oryzae pv. oryzae KACC10331] gi|84623941|ref|YP_451313.1| DNA gyrase subunit A [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188576360|ref|YP_001913289.1| DNA gyrase subunit A [Xanthomonas oryzae pv. oryzae PXO99A] gi|58426623|gb|AAW75660.1| DNA gyrase subunit A [Xanthomonas oryzae pv. oryzae KACC10331] gi|84367881|dbj|BAE69039.1| DNA gyrase subunit A [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188520812|gb|ACD58757.1| DNA gyrase, A subunit [Xanthomonas oryzae pv. oryzae PXO99A] Length = 898 Score = 417 bits (1073), Expect = e-114, Method: Compositional matrix adjust. Identities = 256/685 (37%), Positives = 374/685 (54%), Gaps = 69/685 (10%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 V+L + + YL YA+S I RA+PD RDG KPVHRR++ AM E+G A+ KSARIV Sbjct: 11 VNLEDEMRKSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHELGAHSNKAYFKSARIV 70 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGDQSVYD+LVR+AQPF RY ++ GQGNFG++DGDSAAA RYTE+RM+++ Sbjct: 71 GDVIGKYHPHGDQSVYDTLVRMAQPFSLRYMMVDGQGNFGSVDGDSAAAMRYTESRMSRL 130 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A ++ +D++ VDF+ Y+E++ EP V P++FP+LL NG++GIAVGMAT+IP HN+ E Sbjct: 131 AHELMADIDKETVDFQPNYDEKEQEPTVMPTRFPSLLVNGSAGIAVGMATNIPPHNLTEA 190 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 A +ALID PE+ +E L+EYI GPDFPT GII I YR GRG R+RA+ VE Sbjct: 191 INACIALIDTPELDVEGLMEYIPGPDFPTAGII-NGTAGIAAGYRTGRGRVRIRAKADVE 249 Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319 G IVVTEIPYQV K+RLIEKIAEL+ K++ + ++RDES +D + R Sbjct: 250 VADNGREAIVVTEIPYQVNKARLIEKIAELVKEKKLEGISELRDESDKDGMRIYIEIKRG 309 Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379 ++++ +++ + ME+ F +NM L GR PQ+M L +L+ ++ HRREV+ RR+ F Sbjct: 310 ESAEVVLNNLYQQTQMESVFGINMVALIDGR-PQLMNLKQMLEAFIRHRREVVTRRTIFE 368 Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSR---------------- 420 ++ R +L+GL +A NIDE+I +I+ P+ M+++ Sbjct: 369 LRKARARAHVLEGLTVALANIDEMIELIKTSANPQEARERMLAKTWQPGLVGALLGAAGA 428 Query: 421 ------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKID 462 + L+E Q IL +RL L LE+ ++ E LL E + Sbjct: 429 EASKPEDLPPGVGLIKGFYQLSEVQASQILEMRLHRLTGLEQEKLTDEYKQLLGVIEGLI 488 Query: 463 SLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITV 522 +L + I E+ ++E + G R T S D L +I E + V Sbjct: 489 RILENPDVLLQVIRDELINIREEY------GDERRTEIRHSEEDLDILD--LIAPEDVVV 540 Query: 523 VISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT 574 +S+ G+ + + + SA KE D + +T D +L ++ GK + Sbjct: 541 TLSHAGYAKRQPVSAYRAQRRGGRGRSAAATKEEDFIDQLWLVNTHDTLLTFTSSGKVFW 600 Query: 575 LP------AGNLLSGRG--------HGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSK 620 LP AG+ GR GE +Q ++ + D F + S Sbjct: 601 LPVHQLPEAGSNARGRPIINWIPLEAGERVQAVLPVREYVDNRYVFFATRNGTVKKTSLS 660 Query: 621 GNAFIVEESEIIANTRKGKTFLKVS 645 AF + +I N +G + V+ Sbjct: 661 EFAFRLARGKIAINLDEGDALIGVA 685 >gi|308189875|ref|YP_003922806.1| DNA gyrase subunit A [Mycoplasma fermentans JER] gi|319777071|ref|YP_004136722.1| DNA gyrase subunit a [Mycoplasma fermentans M64] gi|307624617|gb|ADN68922.1| DNA gyrase subunit A [Mycoplasma fermentans JER] gi|318038146|gb|ADV34345.1| DNA gyrase subunit A [Mycoplasma fermentans M64] Length = 926 Score = 417 bits (1073), Expect = e-114, Method: Compositional matrix adjust. Identities = 222/525 (42%), Positives = 342/525 (65%), Gaps = 16/525 (3%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 ++ + V + ++ +L YA+S I RA+PD RDG KPVHRRI+ M+E+G+ FG+ + Sbjct: 78 KDGIHPVEVHKEMKNSFLEYAMSVIVSRALPDARDGLKPVHRRILFDMNELGITFGSQHR 137 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSARIVG+V+GK HPHGD SVY+++VR+AQ F RYPL+ G GNFG+IDGD AAA RYTE Sbjct: 138 KSARIVGDVLGKYHPHGDSSVYEAMVRMAQDFSMRYPLVDGHGNFGSIDGDEAAAMRYTE 197 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 ARM+++A +L+G+ +D VDF D Y+ + EP V PS+FPNLL +G SGIAVGMATSIP Sbjct: 198 ARMSKLAAEMLEGIKKDTVDFVDNYDASEKEPSVLPSRFPNLLVSGGSGIAVGMATSIPP 257 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E +A +AL +NPEI I L+E++ GPDFPTG +I+ I ++Y G+G +R Sbjct: 258 HNLGETIDATIALANNPEIDIYGLMEFLPGPDFPTGAMIL-GNAGIKDAYLTGKGSIPIR 316 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312 + +EE G I+VTEIPY+V+K+ +IEKIAEL+ K+I + D+RDES+ E +RIV Sbjct: 317 SIAKIEEYSNGKSKIIVTEIPYEVKKTAIIEKIAELVKDKQIEGIADLRDESSREGIRIV 376 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 + K ++++P +L+ ++ ++++ + +N L G P+V+ L L+ +L H+ EV+ Sbjct: 377 IDVK-KNVNPHVLLNKLYRQTNLQVNYNVNFVALVDGE-PKVLNLKQALEVYLRHQEEVV 434 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAII---RNEDKPKPVMVSRFSLTENQVD 429 RR F + R+ IL+GL IA NIDE+IAII + + + + + RF+LTE Q Sbjct: 435 TRRLKFDLIKAQDRLHILEGLKIAVENIDEVIAIIKKSKTDGEAQANLAKRFNLTEKQTK 494 Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489 AI+++RL L L + E+ L E E+I+ +L + + I E+ E+KE ++ Sbjct: 495 AIVDMRLGRLTGLAIENMLEEMAELRKEIERIEFILANHSELIKLIVKELTEIKEKYND- 553 Query: 490 TDLGRRRTTFCEVSRADKATL-QQAMIEKEPITVVISNRGWIRSL 533 +RRT +++ + T+ + +I + I + S +G+++ + Sbjct: 554 ----KRRT---QINYEIQGTITDEDLIPQRDIVITTSAKGFVKRM 591 >gi|225627572|ref|ZP_03785609.1| DNA gyrase, A subunit [Brucella ceti str. Cudo] gi|225617577|gb|EEH14622.1| DNA gyrase, A subunit [Brucella ceti str. Cudo] Length = 934 Score = 417 bits (1073), Expect = e-114, Method: Compositional matrix adjust. Identities = 257/694 (37%), Positives = 384/694 (55%), Gaps = 61/694 (8%) Query: 2 GVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61 G D+++ ++ +S+ ++ YL YA+S I RA+PD+RDG KPVHRRI+HAM Sbjct: 9 GSDDMNGGPNGGPSGIEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAM 68 Query: 62 SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121 +EM L + ++KSA +VGEV+GK HPHGD S+YD+LVR+AQ F R PLI GQGNFG+I Sbjct: 69 NEMNLAYNRPYRKSAGVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLIDGQGNFGSI 128 Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181 DGD AA RYTE R+ +V E +L +D+D V+F+D Y+ + EPVV P++FPNLL NG+ Sbjct: 129 DGDPPAAMRYTECRLEKVTESLLSDIDKDTVNFQDNYDGREQEPVVVPARFPNLLVNGSG 188 Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241 GIAVGMAT+IP HN+ E+ + +ALIDNP I + +L+E I GPDFPTGGII+ R I Sbjct: 189 GIAVGMATNIPPHNLGEVIDGCVALIDNPAIELSELMELIPGPDFPTGGIIL-GRNGINS 247 Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301 +Y GRG +R R +E + I++TEIPYQV K+ +IEK+AEL+ KRI + D+ Sbjct: 248 AYTTGRGSVIMRGRATIEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKRIDGISDL 307 Query: 302 RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361 RDES + V+ R D+++ ++ + ++T F NM L+ G+ Q+ LD +L Sbjct: 308 RDESDREGYRVVVELKRDAVADVVLNQLYRYTPLQTSFGCNMVALNGGKPEQLTLLD-ML 366 Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP----KPVM 417 + ++A R EV+ RR+ F + R +L GL IA NIDE+IA+IR P + +M Sbjct: 367 RAFVAFREEVVTRRTKFLLNKARDRAHVLVGLAIAVANIDEVIALIRRAPDPATAREQLM 426 Query: 418 VSR-------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELD 452 R ++L+E Q AIL+LRL+ L L ++ EL+ Sbjct: 427 ERRWPAVDVAPLIRLIDDPRHTLNEDNTYNLSEEQARAILDLRLQRLTALGRDEVADELN 486 Query: 453 NLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ 512 + E +L S + N + E+ V++ F+ RRT E+ + Sbjct: 487 KIGEEIRDYLDILGSRLRVMNIVKEEMIAVRDEFATP-----RRT---EIGFGGAEMDDE 538 Query: 513 AMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRIL 564 +I +E + V +S+ G+I R+ + S + KE D + A+T +L Sbjct: 539 DLIAREDMVVTVSHAGYIKRVPLTTYRAQRRGGKGRSGMATKEEDFVTRLFVANTHTPVL 598 Query: 565 LLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY----DSTCKLL 615 S+ G K + LP G S G+A+ ++ L + I T DS L Sbjct: 599 FFSSRGIVYKEKVWRLPVGTPQS---RGKALINMLPLQQGERITTIMPLPEDEDSWANLD 655 Query: 616 VV--SSKGNAFIVEESEIIANTRKGKTFLKVSSE 647 V+ +++G + S+ + R GK +K+ E Sbjct: 656 VMFSTTRGTVRRNKLSDFVQVNRNGKIAMKLEDE 689 >gi|110806200|ref|YP_689720.1| DNA gyrase subunit A [Shigella flexneri 5 str. 8401] gi|110615748|gb|ABF04415.1| DNA gyrase subunit A [Shigella flexneri 5 str. 8401] Length = 875 Score = 417 bits (1073), Expect = e-114, Method: Compositional matrix adjust. Identities = 257/659 (38%), Positives = 381/659 (57%), Gaps = 65/659 (9%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + V++ L+ YL YA+S I RA+PD+RDG KPVHRR+++AM+ +G D+ A+KKSA Sbjct: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG+IDGDSAAA RYTE R+ Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 ++A ++ ++++ VDF D Y+ + P V P+K PNLL NG+SGIAVGMAT+IP HN+ Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ LA ID+ +ISIE L+E+I GPDFPT II R I E+YR GRG +RAR Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAII-NGRRGIEEAYRTGRGKVYIRARA 246 Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314 VE + G I+V EIPYQV K+RLIEKIAEL+ KR+ + +RDES +D +RIV+ Sbjct: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K ++ ++++ +++ + ++ F +NM L G+ P++M L I+ ++ HRREV+ R Sbjct: 307 VKRDAVG-EVVLNNLYSQTQLQVSFGINMVALHHGQ-PKIMNLKDIIAAFVRHRREVVTR 364 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----------- 420 R+ F ++ R IL+ L +A NID II +IR+ P K +V+ Sbjct: 365 RTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAML 424 Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457 + LTE Q AIL+LRL+ L LE ++ E LL + Sbjct: 425 ERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQ 484 Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517 ++ +L S + I E+ V+E F G +R T + AD + +I + Sbjct: 485 IAELLRILGSADRLMEVIREELELVREQF------GDKRRTEITANSADINL--EDLITQ 536 Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569 E + V +S++G+++ + + SA KE D + L A+T D IL S+ Sbjct: 537 EDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSR 596 Query: 570 GKAYTLPAGNLLSG-RG-HGEAIQLLIDLNHNQDIVTAFVYDSTC----KLLVVSSKGN 622 G+ Y++ L RG G I L+ L ++ I TA + + C K+ + ++ G Sbjct: 597 GRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERI-TAILPVTECEEGVKVFMATANGT 654 >gi|37679431|ref|NP_934040.1| DNA gyrase, subunit A [Vibrio vulnificus YJ016] gi|37198175|dbj|BAC94011.1| DNA gyrase, subunit A [Vibrio vulnificus YJ016] Length = 900 Score = 417 bits (1073), Expect = e-114, Method: Compositional matrix adjust. Identities = 256/646 (39%), Positives = 380/646 (58%), Gaps = 64/646 (9%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + V++ L YL YA+S I RA+PD+RDG KPVHRR+++AM+ +G D+ +KKSA Sbjct: 8 ITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKPYKKSA 67 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG+IDGDSAAA RYTE RM Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVRM 127 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 ++A +L +D++ VD+ Y+ + P V P+K PNLL NG+SGIAVGMAT+IP HN+ Sbjct: 128 AKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ + LA I+N I+I++L++YI GPDFPT +I R+ I+++Y+ GRG +R++ Sbjct: 188 TEVIDGCLAYINNEAITIDELMDYIPGPDFPTAALI-SGRKGIIDAYKTGRGKIYMRSKA 246 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFP 315 +E G I+VTEIPYQV K+RLIEKIAEL+ K++ + +RDES +D +RIV+ Sbjct: 247 EIEVEKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIEC 306 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 K ++ ++++ +++ + ++T F +NM L G+ P++ L +LK ++ HRREV+ RR Sbjct: 307 KRDAVG-EVVLNNLYAQTQLQTTFGINMVALDNGQ-PKLFNLKEMLKCFVDHRREVVTRR 364 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR------------ 420 + F ++ R IL+ L +A NIDEII +IRN P K +V+R Sbjct: 365 TIFELKKARDRAHILEALALALANIDEIIELIRNAATPAEAKAGLVARGWDLGNVAAMLE 424 Query: 421 ----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458 + LTE Q AIL+LRL L LE +I E LL E Sbjct: 425 SAGTDAARPDWLEPQYGIRDGQYFLTETQAQAILDLRLHKLTGLEHEKILDEYKALLDEI 484 Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518 +++ +L S ++ I E+ V++ F RRT E++ A + +I +E Sbjct: 485 KELMHILASTERLMEVIREELEMVRDAFGDV-----RRT---EITAASHDIDLEELIARE 536 Query: 519 PITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570 + V +S+ G+++ + + SA K+ D ++ L A+T D ILL ST G Sbjct: 537 DVVVTLSHEGYVKYQILSDYEAQRRGGKGKSATKMKDEDYIERLLVANTHDNILLFSTRG 596 Query: 571 KAYTLPAGNL-LSGR-GHGEAIQLLIDLNHNQDI-----VTAFVYD 609 K Y + L L+ R G+ I L+ L N+ I VT F D Sbjct: 597 KTYRMKVYQLPLASRTARGKPIVNLLPLEENERITAILPVTEFSAD 642 >gi|300723734|ref|YP_003713041.1| DNA gyrase subunit A, type II topoisomerase [Xenorhabdus nematophila ATCC 19061] gi|297630258|emb|CBJ90909.1| DNA gyrase, subunit A, type II topoisomerase [Xenorhabdus nematophila ATCC 19061] Length = 879 Score = 417 bits (1073), Expect = e-114, Method: Compositional matrix adjust. Identities = 261/658 (39%), Positives = 380/658 (57%), Gaps = 65/658 (9%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + V++ L+ YL YA+S I RA+PD+RDG KPVHRR++ AM+ +G D+ +KKSA Sbjct: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSA 67 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD +VYD++VRLAQPF RY L+ GQGNFG++DGDSAAA RYTE RM Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRLAQPFSMRYMLVDGQGNFGSVDGDSAAAMRYTEVRM 127 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 ++A +L ++++ VDF Y+ + P V P++ PNLL NG+SGIAVGMAT+IP HN+ Sbjct: 128 AKIAHELLADLEKETVDFVPNYDGTEQIPEVMPTRIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ + LA ID+ ISIE L+EYI GPDFPT II R I E+YR GRG +RAR Sbjct: 188 SEVIDGCLAYIDDENISIEGLMEYIPGPDFPTAAII-NGRRGIQEAYRTGRGKIYIRARA 246 Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314 VE + G I+V EIPYQV K+RLIEKIAEL+ KRI + +RDES +D +RIV+ Sbjct: 247 EVEADEKTGRETIIVNEIPYQVNKARLIEKIAELVKEKRIEGISALRDESDKDGMRIVIE 306 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K ++ ++++ +++ L+ ++ F +NM L G+ P+++ L IL ++ HRREV+ R Sbjct: 307 VKRDAVG-EVVLNNLYSLTQLQVSFGINMVALHQGQ-PKLLNLKDILSAFVCHRREVVTR 364 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVS------------ 419 R+ F ++ R IL+ L IA NID +I +IR P K +VS Sbjct: 365 RTIFELRKARERAHILEALAIALANIDPVIELIRRASTPAEAKASLVSQPWELGNVAAML 424 Query: 420 ----------------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457 ++ LTE Q AIL+LRL+ L LE ++ E LL Sbjct: 425 EQAGDDAARPEWLEPEYGIHEGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYRELLKV 484 Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517 ++ +L + ++ I E+ +KE ++ + RRT E S AD + +I + Sbjct: 485 IAELLFILENPERLMEVIREELLAIKEQYNDA-----RRTELTENS-ADINI--EDLINQ 536 Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569 E + V +S++G+++ + + SA KE D ++ L A+T D IL S Sbjct: 537 EDVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARTKEEDFIERLLVANTHDTILCFSNK 596 Query: 570 GKAYTLPAGNLL-SGRG-HGEAIQLLIDLNHNQDIVTAFV----YDSTCKLLVVSSKG 621 GK Y + L + RG G I L+ L N+ I TA + Y+ + + ++ G Sbjct: 597 GKMYWMKVYQLPEASRGARGRPIVNLLPLGQNERI-TAILPVREYEDGLNIFMATASG 653 >gi|302388607|ref|YP_003824428.1| DNA gyrase subunit A [Thermosediminibacter oceani DSM 16646] gi|302199235|gb|ADL06805.1| DNA gyrase subunit A [Thermosediminibacter oceani DSM 16646] Length = 809 Score = 417 bits (1073), Expect = e-114, Method: Compositional matrix adjust. Identities = 262/700 (37%), Positives = 409/700 (58%), Gaps = 32/700 (4%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 V V++ +++ Y+ YA+S I RA+PD+RDG KP+HRRI++AMSE+ L +KS Sbjct: 7 KVVPVTIEDEMKKSYIDYAMSVIVGRALPDVRDGLKPIHRRILYAMSELNLTPDRPHRKS 66 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 A IVG+V+GK HPHGD ++YD++VRLAQ F RYPLI G GNFG+IDGD AA RYTEAR Sbjct: 67 ATIVGDVMGKYHPHGDAAIYDAMVRLAQDFSIRYPLIDGHGNFGSIDGDPPAAMRYTEAR 126 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 ++++A +L +D+D VDF +++ EP V PS+FPNLL NG+SGIAVGMAT+IP HN Sbjct: 127 LSRIALEMLSDIDKDTVDFIPNFDDTLKEPAVLPSRFPNLLVNGSSGIAVGMATNIPPHN 186 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 + E+ + + +I+NP+++ ++L+ I GPDFPTGGII+ RE I E Y GRG VRA+ Sbjct: 187 LSEVIDGVVMMIENPDVTSQELMAAIKGPDFPTGGIIL-GREGIREMYTTGRGSIIVRAK 245 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314 +E + G IVVTEIPY V K+RLIEKIAEL+ K + + D+RDES + +RIV+ Sbjct: 246 ATIEPMEGGKQRIVVTEIPYMVNKARLIEKIAELVRDKHLDGISDLRDESDRNGLRIVIE 305 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K R + +++ ++ + M+ F M L + PQV+ L ++ +L H++EV+ R Sbjct: 306 LK-RDANAHVILNQLYKHTQMQVTFGAIMLALVENK-PQVLTLREMIYHYLRHQQEVVVR 363 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDKP--KPVMVSRFSLTENQVDAI 431 R+ + + + RV IL+GL IA ++DE+IA+IR ++D P + ++ F LTE Q I Sbjct: 364 RTKYELARAEERVHILEGLRIALNHLDEVIALIRKSKDVPTAREGLMKNFGLTEKQAQVI 423 Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491 L++RL+ L LE +I+ E LL + + +L K + I E+ ++KE F Sbjct: 424 LDMRLQRLTALERQKIEDEYRELLEKIDYYKRVLGDEKLVFAIIKEELLKIKERFGDE-- 481 Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSAL 543 RR EV D +Q +I +E + + ++ G++ RS K ++ + Sbjct: 482 --RRTRIVAEVKDFD----EQDLIPEEDVVITMTYMGYVKRMPLSSYRSQKRGGKGVTGI 535 Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEAIQLLIDLNHNQD 601 +E D ++ L A T +L + G Y L A + +GR G AI L+ L Q+ Sbjct: 536 TTREEDFVERILVATTHHVVLFFTNQGNVYRLKAHEIPEAGRTAKGTAIVNLLPLK-PQE 594 Query: 602 IVTAFV----YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657 V A + + L++V+ +G SE ++ + G + ++S +++ V V Sbjct: 595 KVNAVIPIKDFGEASYLVMVTKRGLVKKTLLSEYESSRKTGIIAITLTSGDELIGVKLVG 654 Query: 658 GDHVAVVGENRKLLI-FSIDQIPEMSR-GKGVRLQSYKDG 695 ++G + + I FS++ + R +GV+ + +G Sbjct: 655 KKDELILGTSHGMSIRFSVEDVTPTGRTARGVKAITLGEG 694 >gi|146312441|ref|YP_001177515.1| DNA gyrase subunit A [Enterobacter sp. 638] gi|145319317|gb|ABP61464.1| DNA gyrase subunit A [Enterobacter sp. 638] Length = 888 Score = 417 bits (1073), Expect = e-114, Method: Compositional matrix adjust. Identities = 256/659 (38%), Positives = 381/659 (57%), Gaps = 65/659 (9%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + V++ L+ YL YA+S I RA+PD+RDG KPVHRR+++AM+ +G D+ A+KKSA Sbjct: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG++DGDSAAA RYTE RM Sbjct: 68 RVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRM 127 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 +++A ++ +++D VDF D Y+ + P V P+K PNLL NG+SGIAVGMAT+IP HN+ Sbjct: 128 SKIAHELMADLEKDTVDFVDNYDGTERIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNI 187 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ LA ID+ EI++E L+E+I GPDFPT II R I E+YR GRG +RAR Sbjct: 188 TEVINGCLAYIDDEEITVEGLMEHIPGPDFPTAAII-NGRRGIEEAYRTGRGKIYIRARA 246 Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314 VE + G I+V EIPYQV K+RLIEKIAEL+ KR+ + +RDES +D +RIV+ Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K ++ ++++ +++ + ++ F +NM L G+ P++M L IL ++ HRREV+ R Sbjct: 307 IKRDAVG-EVVLNNLYSQTQLQVSFGINMVALHHGQ-PKIMNLKDILSAFVRHRREVVTR 364 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-------------------------- 408 R+ F ++ R IL+ L +A NID II +IR Sbjct: 365 RTIFELRKARDRAHILEALAVALANIDPIIELIRRAPTPAEAKAGLVAQPWALGNVSAML 424 Query: 409 ---NEDKPKP--------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457 +D +P V ++ LTE Q AIL+LRL+ L LE ++ E LL + Sbjct: 425 ERAGDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQ 484 Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517 ++ +L S + I E+ V++ F + RRT E++ + +I + Sbjct: 485 IAELLHILGSADRLMEVIREELELVRDQFGDA-----RRT---EITANTSDINIEDLINR 536 Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569 E + V +S++G+++ + + SA KE D + L A+T D IL S+ Sbjct: 537 EDVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSR 596 Query: 570 GKAYTLPAGNLL-SGRG-HGEAIQLLIDLNHNQDIVTAFV----YDSTCKLLVVSSKGN 622 G+ Y + L + RG G I L+ L N+ I TA + Y+ + + ++ G Sbjct: 597 GRLYWMKVYQLPEASRGARGRPIVNLLPLEPNERI-TAILPVREYEEGVNVFMATASGT 654 >gi|221134590|ref|ZP_03560895.1| DNA gyrase, A subunit [Glaciecola sp. HTCC2999] Length = 885 Score = 417 bits (1073), Expect = e-114, Method: Compositional matrix adjust. Identities = 243/602 (40%), Positives = 355/602 (58%), Gaps = 57/602 (9%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 +++ L+ YL YA+S I RA+PD+RDG KPVHRR++ AM+E+ DF +KKSAR+V Sbjct: 11 INIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELKNDFNKPYKKSARVV 70 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG++DGDSAAA RYTE RM+++ Sbjct: 71 GDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEVRMSKI 130 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A +L +D++ V+F Y+ + P V P++ PNLL NG+SGIAVGMAT+IP HN+ E+ Sbjct: 131 AHELLADLDKETVNFVPNYDGTEKIPEVMPTRVPNLLVNGSSGIAVGMATNIPPHNLTEV 190 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 +ALI+NP +IE+L+EYI GPDFPT II R+ I E+YR GRG +RAR +E Sbjct: 191 INGCVALIENPACTIEELIEYIPGPDFPTAAII-SGRKGIEEAYRTGRGKIYLRARAEIE 249 Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKNR 318 G I+V E+PYQV K++LIEKIAEL+ KRI + +RDES +D +RIV+ K R Sbjct: 250 REDNGKETIIVNELPYQVNKAKLIEKIAELVKEKRIEGVSALRDESDKDGMRIVIEVK-R 308 Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378 + ++L+ ++ + ++T F +NM L + P+V L L+ ++ HRREV+ RR+ + Sbjct: 309 NESAEVLLNHLYANTQLQTVFGINMVALDNNQ-PKVFNLKDTLECFILHRREVVTRRTVY 367 Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV----------------MVSR-- 420 ++ R +L+GL IA NID +I +I+ P M+ R Sbjct: 368 ELKKARDRAHLLEGLAIALANIDPVIELIKASPSPSEAKLKLTAQGWALGDVAEMLERAG 427 Query: 421 -------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKI 461 + LTE Q AIL+LRL L LE +I SE +LL ++ Sbjct: 428 DDAARPDWLEPEYGIRDGLYYLTEQQAQAILDLRLHKLTGLEHDKILSEYKDLLDVIAEL 487 Query: 462 DSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPIT 521 +L S ++ I E+ +++ F RRT E++ A + +IE+E + Sbjct: 488 LRILGSSERLMEVIREELEAIRDEFGDD-----RRT---EITAASHDIDLEDLIEREDVV 539 Query: 522 VVISNRGWIRSLKSHSVDL--------SALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573 V +S+ G+++ K + SA K+ D ++ L A+T D IL ST G+ Y Sbjct: 540 VTLSHEGYVKYQKLSDYEAQKRGGKGKSATKMKDEDFIEKLLVANTHDHILCFSTRGRLY 599 Query: 574 TL 575 L Sbjct: 600 WL 601 >gi|91202854|emb|CAJ72493.1| strongly similar to DNA gyrase subunit A, type II topoisomerase [Candidatus Kuenenia stuttgartiensis] Length = 838 Score = 417 bits (1073), Expect = e-114, Method: Compositional matrix adjust. Identities = 278/775 (35%), Positives = 435/775 (56%), Gaps = 68/775 (8%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 +EN+K + + +++ YL+YA+S I RA+PD RDG KP RRI+ AM+++ L A F+ Sbjct: 5 KENIKDLFIEEEMKDSYLSYAMSVIMSRALPDARDGLKPSQRRILVAMNDLNLSPRAKFR 64 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 K A+I G+ G HPHG+Q VY +LVR+AQ F RYPLI GQGNFG+IDGD AA RYTE Sbjct: 65 KCAKIAGDTTGNYHPHGEQVVYPTLVRMAQDFNYRYPLIQGQGNFGSIDGDPPAAMRYTE 124 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 ARMT V I++ +++ VD+ Y++ +EPVV PSKFPNLL NG SGIAVGMATSIP Sbjct: 125 ARMTDVTITIMEDLEKRTVDYTPNYDDTRTEPVVLPSKFPNLLCNGCSGIAVGMATSIPP 184 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN EIC+ +IDNPE++IE+L+ I GPDFPTG I + I E Y+ GRG VR Sbjct: 185 HNTNEICDGIAMVIDNPEVTIEELMTVITGPDFPTGAQICGT-SGIKEGYKTGRGTIIVR 243 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313 A+ VE G IVVTEIPYQ+ + ++E+IA L+ + + + D+R+ES ++ Sbjct: 244 AKAHVETSKTGRKSIVVTEIPYQLNRDNILERIALLVREELLKGISDVRNESDRHGSRLV 303 Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373 + D ++++ ++ + ++ F + M L R P+ + L +L ++ HR+ V+ Sbjct: 304 IDLKKGEDEEVVLNQLYKHTKLQDTFSIIMIALVDNR-PETLNLKQMLICYIEHRKVVIV 362 Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVDA 430 +R+ F ++ R +L+GL IA NID +I +I+ D ++S FSL+E Q +A Sbjct: 363 KRTRFLLEKAQNRAHVLEGLKIALNNIDRVIELIKTSDTVDAARRGLISTFSLSEIQANA 422 Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490 IL++RL+ L LE+ +I +E + L A+ ++ S+L + K + I ++ E+KE F Sbjct: 423 ILDMRLQRLTGLEQGKIDAEYEKLCADIKEYQSILANEKLVLDIIKKDVAEIKEQFGD-- 480 Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSVDLSA 542 +RRT E+ A ++ +I +E +TV+IS+ G+I+ L + + Sbjct: 481 ---KRRT---EIVGAVGDLEREDLITEENVTVIISHEGYIKRLPLSAYRKQQRGGKGVIG 534 Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQ 600 KEGD + A T D IL + GK Y L ++ + G A+ L++L + Sbjct: 535 AEMKEGDFAEHLFVASTHDYILFFTDQGKVYWLKVYDVPQMGKITKGRALINLLELKEGE 594 Query: 601 DIVTAFV----YDSTCKLLVVSSKGNAFIVEESEIIA--NTRKGKTFLKVSSEEKMKLV- 653 + VT+F+ +D +L++ +S G I++++ + A N +KG + ++ +E L+ Sbjct: 595 N-VTSFIPVRNFDDR-QLVMATSHG---IIKKTVLKAYGNPKKG-GIIAINLDEGDTLIG 648 Query: 654 VKVT-GDHVAVVG-ENRKLLIFS---IDQIPEMSRG-KGVRLQSYKDGGISDVICFKICE 707 VK+T G ++G E K + FS + + +SRG KG++L++ D +C Sbjct: 649 VKLTNGKQDLILGTEQGKAVRFSEEDVRSVGRVSRGVKGIKLKN------GDKVC----- 697 Query: 708 GLTWIDSAGRSYNRSENDLLGWLGK-----------RGGVGSLVPKGFPRSGKFL 751 G+ +D EN GK RGG G + K R+GK + Sbjct: 698 GMVVVDDESSLMTICEN----GFGKRTNFEEYSAKNRGGQGVINIKTTERNGKVV 748 >gi|20530727|gb|AAM27206.1|AF503576_1 DNA gyrase GyrA [Streptococcus pneumoniae] Length = 822 Score = 417 bits (1072), Expect = e-114, Method: Compositional matrix adjust. Identities = 257/706 (36%), Positives = 414/706 (58%), Gaps = 38/706 (5%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 ++N+ V+L ++ ++ YA+S I RA+PD+RDG KPVHRRI++ M+E+G+ K Sbjct: 3 DKNLVNVNLTKEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHK 62 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSARI G+V+GK HPHGD S+Y+++VR+AQ + RY L+ G GNFG++DGD AAA RYTE Sbjct: 63 KSARITGDVMGKYHPHGDFSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYTE 122 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 ARM+++A +L+ ++++ VDF D Y+ + EP+V P++FPNLL NG +GIAVGMAT+IP Sbjct: 123 ARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIPP 182 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E +A ++DNPE++ + L+E + GPDFPTG +++ + I ++Y G+G +R Sbjct: 183 HNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVM-GKSGIHKAYETGKGSIVLR 241 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312 +R +EE G IVVTE PY V K+++ E I L+ KRI + +RDES E VR V Sbjct: 242 SRTEIEETKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 + K R ++++ ++F ++ M+T F NM + G +P+++ L IL ++ H++EV+ Sbjct: 302 IEVK-RDASANVILNNLFKMTQMQTNFGFNMLAIQNG-IPKILSLRQILDAYIEHQKEVV 359 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVD 429 RR+ F + + R IL+GLLIA +IDE+I IIR + + + ++S+F L+E Q Sbjct: 360 VRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSKFKLSERQSQ 419 Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489 AIL++RLR L LE +I+SE D+LLA + +L ++ I E+ EVK FS Sbjct: 420 AILDMRLRRLTGLERDKIQSEYDDLLALIADLADILAKPERVSQIIKDELDEVKRKFSD- 478 Query: 490 TDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSL--------KSHSVDL 540 +RRT E+ +L+ + +IE+ + + +SNRG+I+ L K + Sbjct: 479 ----KRRT---ELMVGQVLSLEDEDLIEESDVLITLSNRGYIKRLDQDEFTAQKRGGRGV 531 Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS-GR-GHGEAIQLLIDLNH 598 K+ D ++ + T D +L + G+ Y L + GR G + L+ L+ Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDE 591 Query: 599 NQDIVTAFVYDS----TCKLLVVSSKGNAFIVEESEI--IANTRK-GKTFLKVSSEEKMK 651 ++ I T +S L + G IV+ + + AN R+ G L + E+++ Sbjct: 592 DESIQTVINVESDRSDDAYLFFTTRHG---IVKRTSVKEFANIRQNGLKALNLKDEDELI 648 Query: 652 LVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSR-GKGVRLQSYKDG 695 V+ GD ++G + F+ + MSR GV+ + ++G Sbjct: 649 NVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMSRIATGVKGVNLREG 694 >gi|256061183|ref|ZP_05451335.1| DNA gyrase subunit A [Brucella neotomae 5K33] Length = 934 Score = 417 bits (1072), Expect = e-114, Method: Compositional matrix adjust. Identities = 257/694 (37%), Positives = 384/694 (55%), Gaps = 61/694 (8%) Query: 2 GVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61 G D+++ ++ +S+ ++ YL YA+S I RA+PD+RDG KPVHRRI+HAM Sbjct: 9 GSDDMNGGPNGGPSGIEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAM 68 Query: 62 SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121 +EM L + ++KSA +VGEV+GK HPHGD S+YD+LVR+AQ F R PLI GQGNFG+I Sbjct: 69 NEMNLAYNRPYRKSAGVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLIDGQGNFGSI 128 Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181 DGD AA RYTE R+ +V E +L +D+D V+F+D Y+ + EPVV P++FPNLL NG+ Sbjct: 129 DGDPPAAMRYTECRLEKVTESLLSDIDKDTVNFQDNYDGREQEPVVLPARFPNLLVNGSG 188 Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241 GIAVGMAT+IP HN+ E+ + +ALIDNP I + +L+E I GPDFPTGGII+ R I Sbjct: 189 GIAVGMATNIPPHNLGEVIDGCVALIDNPAIELSELMELIPGPDFPTGGIIL-GRNGINS 247 Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301 +Y GRG +R R +E + I++TEIPYQV K+ +IEK+AEL+ KRI + D+ Sbjct: 248 AYTTGRGSVIMRGRATIEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKRIDGISDL 307 Query: 302 RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361 RDES + V+ R D+++ ++ + ++T F NM L+ G+ Q+ LD +L Sbjct: 308 RDESDREGYRVVVELKRDAVADVVLNQLYRYTPLQTSFGCNMVALNGGKPEQLTLLD-ML 366 Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP----KPVM 417 + ++A R EV+ RR+ F + R +L GL IA NIDE+IA+IR P + +M Sbjct: 367 RAFVAFREEVVTRRTKFLLNKARDRAHMLVGLAIAVANIDEVIALIRRAPDPATAREQLM 426 Query: 418 VSR-------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELD 452 R ++L+E Q AIL+LRL+ L L ++ EL+ Sbjct: 427 ERRWPAVDVAPLIRLIDDPRHTLNEDNTYNLSEEQARAILDLRLQRLTALGRDEVADELN 486 Query: 453 NLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ 512 + E +L S + N + E+ V++ F+ RRT E+ + Sbjct: 487 KIGEEIRDYLDILGSRLRVMNIVKEEMIAVRDEFATP-----RRT---EIGFGGAEMDDE 538 Query: 513 AMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRIL 564 +I +E + V +S+ G+I R+ + S + KE D + A+T +L Sbjct: 539 DLIAREDMVVTVSHAGYIKRVPLTTYRAQRRGGKGRSGMATKEEDFVTRLFVANTHTPVL 598 Query: 565 LLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY----DSTCKLL 615 S+ G K + LP G S G+A+ ++ L + I T DS L Sbjct: 599 FFSSRGIVYKEKVWRLPVGTPQS---RGKALINMLPLQQGERITTIMPLPEDEDSWANLD 655 Query: 616 VV--SSKGNAFIVEESEIIANTRKGKTFLKVSSE 647 V+ +++G + S+ + R GK +K+ E Sbjct: 656 VMFSTTRGTVRRNKLSDFVQVNRNGKIAMKLEDE 689 >gi|168335263|ref|ZP_02693364.1| DNA gyrase subunit A [Epulopiscium sp. 'N.t. morphotype B'] Length = 874 Score = 417 bits (1072), Expect = e-114, Method: Compositional matrix adjust. Identities = 254/702 (36%), Positives = 396/702 (56%), Gaps = 46/702 (6%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 V ++ ++ Y+ YA+S I RA+PD+RDG KPVHRRI++AM E+ L ++KSARIV Sbjct: 12 VDIKDEMKNCYIDYAMSVIVARALPDVRDGLKPVHRRILYAMDELNLSPDKQYRKSARIV 71 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+ +GK HPHGD S+YD++VRLAQ F RYPL+ G GNFGN+DGDSAAA RYTEARM+++ Sbjct: 72 GDTMGKYHPHGDASIYDAMVRLAQNFNTRYPLVDGHGNFGNVDGDSAAAMRYTEARMSKL 131 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 +L +D++ VDFR ++E EP V P+++PNLL NG+SGIAVGMAT+IP HN+ E+ Sbjct: 132 TMYMLSDIDKETVDFRPNFDESIEEPTVLPARYPNLLVNGSSGIAVGMATNIPPHNMGEV 191 Query: 200 CEAALALIDN----------PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249 A + +IDN E E L+E ++GPDFPTGG I+ R I ++YR G+G Sbjct: 192 IXAVIKIIDNYTGXNETNEKKETEXEDLMEIVVGPDFPTGGQIL-GRYGIEQAYRTGKGK 250 Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309 ++RA+ +EE+ G I++TEIPYQV KS+LIEKIAEL+ K++ + IRDES D Sbjct: 251 VKIRAKTEIEEMSAGKTAIIITEIPYQVNKSKLIEKIAELVKLKKVDGITGIRDESDRDG 310 Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369 ++ R ++ ++++ ++ S ++ F +NM L G P V L +L+ +L H++ Sbjct: 311 MRIVIELRRDVNANIILNQLYKFSQLQDTFSINMLALINGE-PHVFNLKEMLEAYLDHQK 369 Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAY--LNIDEIIAIIRNED---KPKPVMVSRFSLT 424 +V+ RR+ F + R I++G LI ID +I +IRN + K ++ + L+ Sbjct: 370 QVITRRTEFELDKAQARAHIIEGFLIVLGADKIDLVINLIRNSKTVAEAKEKLIEKIGLS 429 Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484 E Q AI+++RLR L LE ++ E + L + + SLL Q I E+ V+E Sbjct: 430 EIQAQAIMDMRLRVLTGLEHDKLTQEFNELXDKIAYLKSLLEHEDQLLKVIKEELIVVRE 489 Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSH 536 F+ RR+ E+S D + +I++E + V I++ G+I+ K Sbjct: 490 KFTDP-----RRS---ELSLLDDEIDIEDLIDEEEVVVTITHFGYIKRXPLVTYKEQKRG 541 Query: 537 SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLI 594 + ++ E D ++ D I+ + G+AY + A + S G AI L+ Sbjct: 542 GRGVIGVNTIEEDFIEKLFTTSNLDFIMFFTNKGRAYKIKAYKIPEASRTARGLAIVNLL 601 Query: 595 DLNHNQDIVTAFVYDSTCK---LLVVSSKGNAFIVEESEIIA--NTRKGKTF-LKVSSEE 648 LN ++ I F L +++ KG +++++ I A N +KG L + + Sbjct: 602 HLNVDEKISAVFPVKQNEHERYLTMITKKG---LIKKTNITAFNNIKKGGIIALTMQDAD 658 Query: 649 KMKLVVKVTGDHVAVVGENRKL-LIFSIDQI-PEMSRGKGVR 688 ++ V + T ++ + L ++F I P KGVR Sbjct: 659 ELVGVYETTDQDKIIIATKKGLGIMFEGKNIRPTGRTAKGVR 700 >gi|256044756|ref|ZP_05447660.1| DNA gyrase subunit A [Brucella melitensis bv. 1 str. Rev.1] Length = 934 Score = 417 bits (1072), Expect = e-114, Method: Compositional matrix adjust. Identities = 257/694 (37%), Positives = 384/694 (55%), Gaps = 61/694 (8%) Query: 2 GVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61 G D+++ ++ +S+ ++ YL YA+S I RA+PD+RDG KPVHRRI+HAM Sbjct: 9 GSDDMNGGPNGGPSGIEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAM 68 Query: 62 SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121 +EM L + ++KSA +VGEV+GK HPHGD S+YD+LVR+AQ F R PLI GQGNFG+I Sbjct: 69 NEMNLAYNRPYRKSAGVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLIDGQGNFGSI 128 Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181 DGD AA RYTE R+ +V E +L +D+D V+F+D Y+ + EPVV P++FPNLL NG+ Sbjct: 129 DGDPPAAMRYTECRLEKVTESLLSDIDKDTVNFQDNYDGREQEPVVLPARFPNLLVNGSG 188 Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241 GIAVGMAT+IP HN+ E+ + +ALIDNP I + +L+E I GPDFPTGGII+ R I Sbjct: 189 GIAVGMATNIPPHNLGEVIDGCVALIDNPAIELSELMELIPGPDFPTGGIIL-GRNGINS 247 Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301 +Y GRG +R R +E + I++TEIPYQV K+ +IEK+AEL+ KRI + D+ Sbjct: 248 AYTTGRGSVIMRGRATIEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKRIDGISDL 307 Query: 302 RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361 RDES + V+ R D+++ ++ + ++T F NM L+ G+ Q+ LD +L Sbjct: 308 RDESDREGYRVVVELKRDAVADVVLNQLYRYTPLQTSFGCNMVALNGGKPEQLTLLD-ML 366 Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP----KPVM 417 + ++A R EV+ RR+ F + R +L GL IA NIDE+IA+IR P + +M Sbjct: 367 RAFVAFREEVVTRRTKFLLNKARDRAHVLVGLAIAVANIDEVIALIRRAPDPATAREQLM 426 Query: 418 VSR-------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELD 452 R ++L+E Q AIL+LRL+ L L ++ EL+ Sbjct: 427 ERRWPAVDVAPLIRLIDDPRHTLNEDNTYNLSEEQARAILDLRLQRLTALGRDEVADELN 486 Query: 453 NLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ 512 + E +L S + N + E+ V++ F+ RRT E+ + Sbjct: 487 KIGEEIRDYLDILGSRLRVMNIVKEEMIAVRDEFATP-----RRT---EIGFGGAEMDDE 538 Query: 513 AMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRIL 564 +I +E + V +S+ G+I R+ + S + KE D + A+T +L Sbjct: 539 DLIAREDMVVTVSHAGYIKRVPLTTYRAQRRGGKGRSGMATKEEDFVTRLFVANTHTPVL 598 Query: 565 LLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY----DSTCKLL 615 S+ G K + LP G S G+A+ ++ L + I T DS L Sbjct: 599 FFSSRGIVYKEKLWRLPVGTPQS---RGKALINMLPLQQGERITTIMPLPEDEDSWANLD 655 Query: 616 VV--SSKGNAFIVEESEIIANTRKGKTFLKVSSE 647 V+ +++G + S+ + R GK +K+ E Sbjct: 656 VMFSTTRGTVRRNKLSDFVQVNRNGKIAMKLEDE 689 >gi|312126270|ref|YP_003991144.1| DNA gyrase subunit A [Caldicellulosiruptor hydrothermalis 108] gi|311776289|gb|ADQ05775.1| DNA gyrase, A subunit [Caldicellulosiruptor hydrothermalis 108] Length = 809 Score = 417 bits (1072), Expect = e-114, Method: Compositional matrix adjust. Identities = 256/697 (36%), Positives = 408/697 (58%), Gaps = 34/697 (4%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 V ++ ++ Y+ YA+S I RA+PD+RDG KPVHRRI++AM+E+GL ++KSA +V Sbjct: 11 VEIQEEMKRSYIDYAMSVIVSRALPDVRDGLKPVHRRILYAMNEIGLTPDKPYRKSATVV 70 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G V+ K HPHGD +VY+SLVR+AQ F R+PL+ G GNFG++DGD AA RYTEARM+++ Sbjct: 71 GHVLAKYHPHGDAAVYESLVRMAQDFSMRHPLVDGHGNFGSVDGDPPAAMRYTEARMSKI 130 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A +L+ ++++ VDF ++E EP V PS+FPNLL NG+ GIAVGMAT+IP HN+ E+ Sbjct: 131 AIEMLRDIEKETVDFMPNFDESAKEPKVLPSRFPNLLVNGSQGIAVGMATNIPPHNLAEV 190 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 +A + L+DN ++ +++ I GPDFPTGG I+ ++ I ++Y G+G VRA+ +E Sbjct: 191 IDAIVYLLDNENAGLDDIMKIIKGPDFPTGGYII-GKKGIRDAYATGKGKIIVRAKATIE 249 Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFPKNR 318 + +G IVVTE+PY V K+RLIEKIAEL+ KRI + DIRDES E +RIV+ K + Sbjct: 250 QTSKGRQRIVVTELPYMVNKARLIEKIAELVHEKRIDGISDIRDESDKEGLRIVIEIK-K 308 Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378 D +++++ ++ + ++ F + M L + P+V+ L +L ++ H++EV+ RR+ + Sbjct: 309 DADANVVLKQLYKNTQLQDSFGIIMLAL-VDNQPKVLTLMDMLNLYIEHQKEVIVRRTKY 367 Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAILNLR 435 ++ + R IL+GL A +IDEII+IIR+ ++ K ++S+F TE Q AIL++R Sbjct: 368 DLKKAEERAHILEGLKKALDHIDEIISIIRSSKTVNEAKERLISKFQFTEVQAQAILDMR 427 Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495 L+ L LE +I+ EL L+ E ++L S I EI E+KE + R Sbjct: 428 LQRLTGLERQKIEEELAELIKMIEYYKNVLASDAMVKEIIKKEILEIKEKYKDE-----R 482 Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSVDLSALHFKE 547 RT + D + ++ IT +++ G+I+ L K ++ + +E Sbjct: 483 RTKIVQDEHEDFEEEELIQEQETVIT--LTHFGYIKRLPLDTYKSQKRGGRGITGISTRE 540 Query: 548 GDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602 D ++ T IL + G +AY +P G S + G AI LI + ++ I Sbjct: 541 EDFVEDVFVTTTHHYILFFTDKGRVFRLRAYEVPEG---SRQAKGTAIVNLIQIGKDEKI 597 Query: 603 V-TAFVYD-STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-D 659 T V D L++ + G V SE T+ GK + ++ ++ + V +G D Sbjct: 598 TATMAVKDFKEGYLMMCTKNGTIKKVLLSEFENTTKAGKKAITLADDDSLVDVKLTSGND 657 Query: 660 HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDG 695 + +V N ++F+ + + M R +GV+ + +DG Sbjct: 658 EIVLVSSNGYCVVFNENDVRSMGRTAQGVKGMTLEDG 694 >gi|295698301|ref|YP_003602956.1| DNA gyrase, A subunit [Candidatus Riesia pediculicola USDA] gi|291157473|gb|ADD79918.1| DNA gyrase, A subunit [Candidatus Riesia pediculicola USDA] Length = 845 Score = 417 bits (1072), Expect = e-114, Method: Compositional matrix adjust. Identities = 240/648 (37%), Positives = 370/648 (57%), Gaps = 67/648 (10%) Query: 13 VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72 V + V ++S+ L+ YL YA+S I RA+PD+RDG KPVHRR+++AM ++G D+ + + Sbjct: 4 VSKEVSSISIEEELKRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMKKLGNDYNSPY 63 Query: 73 KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132 KKSARIVG+VIGK HPHGD SVYD++VRLAQPF RY LI GQGNFG+IDGDSAAA RYT Sbjct: 64 KKSARIVGDVIGKYHPHGDGSVYDAIVRLAQPFSMRYALIDGQGNFGSIDGDSAAAMRYT 123 Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192 E RM+++A+ IL+ ++++ VDF Y+ + P V P+K PNLL NG+SGIAVGM T+IP Sbjct: 124 EIRMSKIAQEILEDLEKNTVDFVPNYDGNEKIPDVMPTKIPNLLINGSSGIAVGMTTNIP 183 Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252 HN+ E+ +A LA I++ +I E+L++YI GPDFPT II E +E IV +YR G+G +V Sbjct: 184 PHNIVEVIDACLAYINDNDIQTEELVKYIRGPDFPTAAIIYEKKEQIVHAYRTGKGTIQV 243 Query: 253 RARWCVEEVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311 RA +E + + I++ EIPYQ+ K RLIEKI EL+ ++I + ++RDES +D Sbjct: 244 RALTEIENDKKNNRTSIIIREIPYQINKIRLIEKIVELVKERKIDGIHEVRDESDKDGMR 303 Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371 V+ R + + ++ S++ L+ ++T +NM L G+ P ++ L I+ ++ +R+E+ Sbjct: 304 VVIELKRESEANFVLNSLYALTRLQTSININMIALLKGK-PTLLNLKKIISSFIDYRKEI 362 Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV------------- 418 + +R+ F + +RV L+ ++I+ NID II++I+ PK + Sbjct: 363 VIKRTIFELNQAKKRVLSLEAMIISLKNIDFIISLIKGASTPKEARLRLTSFCWKLEETL 422 Query: 419 --------------------------SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELD 452 S + E Q IL+L+L+ L LE+ ++ E Sbjct: 423 IELDRFYSKKKDWKNCFENHLDRFQKSNYRFNEEQAQTILDLKLQKLTNLEKEKVFEEYI 482 Query: 453 NLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATL-Q 511 +L E + +L + + I E+ I+ K+ +RRT E D + Q Sbjct: 483 SLTKEITSLVQILQNSNRLMEIIKNEL-----IYIKNQYRDKRRTKIIE----DNSKFNQ 533 Query: 512 QAMIEKEPITVVISNRGWIRSLKSHSVDL--------SALHFKEGDSLKIALHAHTTDRI 563 + +I+K+ + V++SN+G+I+ D+ S+ KE D +K L T + I Sbjct: 534 EDLIKKKKVIVILSNQGYIKFQSISDYDIQKRGGKGKSSTRLKEKDFVKSVLVTDTHENI 593 Query: 564 LLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606 L +S G K Y LP + S G+ I + L + I + F Sbjct: 594 LCVSNFGRIFSIKVYQLPESSRFS---LGKPIVNFLSLKDGEKITSIF 638 >gi|258406591|ref|YP_003199333.1| DNA gyrase, A subunit [Desulfohalobium retbaense DSM 5692] gi|257798818|gb|ACV69755.1| DNA gyrase, A subunit [Desulfohalobium retbaense DSM 5692] Length = 809 Score = 417 bits (1072), Expect = e-114, Method: Compositional matrix adjust. Identities = 251/718 (34%), Positives = 409/718 (56%), Gaps = 55/718 (7%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 ++++ + +++ YL Y+LS I RA+PD+RDG KPVHRRI++AM ++G + +KKSA Sbjct: 2 LQSIHIEEEIKKSYLEYSLSVIIGRALPDVRDGLKPVHRRILYAMHDLGNTYNRPYKKSA 61 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 RIVG+VIGK HPHGD +VYD+LVR+AQ F R+PL+ GQGNFG++DGD+ AA RYTE+RM Sbjct: 62 RIVGDVIGKYHPHGDAAVYDALVRMAQDFNMRHPLVDGQGNFGSLDGDAPAAMRYTESRM 121 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 +++ L +D+ V+FR Y+ EP V P+K PNLL NG SGIAVGMAT+IP HN+ Sbjct: 122 ARISGEFLADIDKQTVNFRANYDNTLHEPEVLPTKVPNLLVNGASGIAVGMATNIPPHNL 181 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ +A LAL+D+P + +++LL YI GPDFPT ++ R+ + ++Y GRG ++R+R Sbjct: 182 GEVTDALLALLDDPSLGLDQLLHYIKGPDFPTAALMY-GRQGMRQAYATGRGSIKLRSRL 240 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFP 315 VEE +G IV+TEIP+ + K+ L+EKIA+L+ ++ + D+RDES + +RIV+ Sbjct: 241 HVEESKKGRESIVITEIPFALNKASLVEKIAQLVNEGKLEGISDLRDESDRNGIRIVIDL 300 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 K +L D+++ +++ + +ET + +N+ + R PQ++ L IL+ +L HR+EV+ RR Sbjct: 301 KRNTLS-DIVINTLYKYTALETSYGINLLAVVNNR-PQLLSLKQILELFLEHRKEVILRR 358 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVDAIL 432 S + + ++R IL+GL IA NIDE++ +IR P K ++ RF L+E Q AIL Sbjct: 359 SRYDLDKAEKRAHILEGLRIALDNIDEVVRLIRASATPAEAKAGLMQRFELSEVQSQAIL 418 Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492 ++RL L LE ++ E +L E + S++ + + E++E+++ F+ Sbjct: 419 DMRLHRLTNLERDKLLEEYRAVLERIEYLKSIIEQSEVLRGVVRDELQELRKTFASP--- 475 Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSVDLSALH 544 RRT E S ++ ++ +I E + + ++ G+I+ K +S + Sbjct: 476 --RRTEILE-SDPNEIDIED-LIPDEEVVITLTRNGYIKRTPLSAYQQQKRGGKGVSGAN 531 Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDI 602 + D + + +LL + G+ + L + GR G I L+ L+ + + Sbjct: 532 VAQKDFVTDLMTGTNHQYLLLFTNKGRMHQLKVYQIPEGRRTARGTHIANLLPLDKEEYV 591 Query: 603 VTAFV---YDSTCKLLVVSSKGNAFIVEESE------------IIANTRKGKTFLKVSSE 647 T +D+ L + KG +V+ S I N R G + V Sbjct: 592 ATVLCMKDFDANHSFLFATKKG---MVKRSAVHLYRNYRPHGLIAVNLRDGDELIAVREV 648 Query: 648 EKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRG----KGVRLQSYKDGGISDVI 701 ++ + +T VA+ F+ ++ M RG KG+ L+ +D +S VI Sbjct: 649 DEESEIFLITHHGVAIR--------FACSEVRSMGRGAAGVKGIALRQ-EDAVVSCVI 697 >gi|289824701|ref|ZP_06544200.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] Length = 878 Score = 417 bits (1072), Expect = e-114, Method: Compositional matrix adjust. Identities = 277/747 (37%), Positives = 411/747 (55%), Gaps = 69/747 (9%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + V++ L+ YL YA+S I RA+PD+RDG KPVHRR+++AM+ +G D+ A+KKSA Sbjct: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG+IDGDSAAA RYTE R+ Sbjct: 68 RVVGDVIGKYHPHGDFAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 ++A ++ ++++ VDF D Y+ + P V P+K PNLL NG+SGIAVGMAT+IP HN+ Sbjct: 128 AKIAHGLMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ LA IDN +ISIE L+E+I GPDFPT II R I E+YR GRG +RAR Sbjct: 188 TEVINGCLAYIDNEDISIEGLMEHIPGPDFPTAAII-NGRRGIEEAYRTGRGKVYIRARA 246 Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314 VE + G I+V EIPYQV K+RLIEKIAEL+ KR+ + +RDES +D +RIV+ Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKDGMRIVIE 306 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K ++ ++++ +++ + ++ F +NM L G+ P++M L I+ ++ HRREV+ R Sbjct: 307 VKRDAVG-EVVLNNLYSQTQLQVSFGINMVALHHGQ-PKIMNLKDIISAFVRHRREVVTR 364 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----------- 420 R+ F ++ R IL+ L IA NID II +IR P K ++SR Sbjct: 365 RTIFELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAALISRPWDLGNVAAML 424 Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457 + LTE Q AIL+LRL+ L LE ++ E LL + Sbjct: 425 ERAGDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQ 484 Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517 ++ +L S + I E+ +++ F G R T + AD + +I + Sbjct: 485 IAELLHILGSADRLMEVIREEMELIRDQF------GDERRTEITANSADINI--EDLISQ 536 Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569 E + V +S++G+++ + + SA KE D + L A+T D IL S+ Sbjct: 537 EDVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSR 596 Query: 570 GKAYTLPAGNLL-SGRG-HGEAIQLLIDLNHNQDIVTAFV----YDSTCKLLVVSSKGNA 623 G+ Y + L + RG G I L+ L N+ I TA + Y+ + + ++ G Sbjct: 597 GRLYWMKVYQLPEASRGARGRPIVNLLPLEANERI-TAILPVREYEEGVNVFMATASGTV 655 Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMS 682 +E G + ++ +++ V +G D V + K++ F D + M Sbjct: 656 KKTALTEFSRPRSAGIIAVNLNDGDELIGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAMG 715 Query: 683 R-GKGVRLQSYKDGGISDVICFKICEG 708 R GVR K G V+ I G Sbjct: 716 RTATGVR--GIKLAGDDKVVSLIIPRG 740 >gi|306829648|ref|ZP_07462838.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus mitis ATCC 6249] gi|304428734|gb|EFM31824.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus mitis ATCC 6249] Length = 822 Score = 417 bits (1072), Expect = e-114, Method: Compositional matrix adjust. Identities = 235/612 (38%), Positives = 373/612 (60%), Gaps = 40/612 (6%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 ++N+ V+L ++ ++ YA+S I RA+PD+RDG KPVHRRI++ M+E+G+ K Sbjct: 3 DKNLVNVNLTKEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHK 62 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSARI G+V+GK HPHGD S+Y+++VR+AQ + RY L+ G GNFG++DGD AAA RYTE Sbjct: 63 KSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYTE 122 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 ARM+++A +L+ ++++ VDF D Y+ + EP+V P++FPNLL NG +GIAVGMAT+IP Sbjct: 123 ARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIPP 182 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E +A ++DNP+++ + L+E + GPDFPTG +++ + I ++Y G+G +R Sbjct: 183 HNLGETIDAVKLVMDNPDVTTKDLMEVLPGPDFPTGALVM-GKSGIHKAYETGKGSIVLR 241 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312 +R +EE+ G IVVTE PY V K+++ E I L+ KRI + +RDES E VR V Sbjct: 242 SRTEIEEIKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 + K R ++++ ++F ++ M+T F NM + G VP+++ L IL ++ H++EV+ Sbjct: 302 IEVK-RDASANVILNNLFKMTQMQTNFGFNMLAIQNG-VPKILSLRQILDAYIEHQKEVV 359 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVD 429 RR+ F + + R IL+GLLIA +IDE+I IIR + + + ++S+F L+E Q Sbjct: 360 VRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSKFKLSERQSQ 419 Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489 AIL++RLR L LE +I+SE D L+A + +L ++ I E+ EVK F Sbjct: 420 AILDMRLRRLTGLERDKIQSEYDELIALIADLADILAKPERVAQIIKDELDEVKRKFGD- 478 Query: 490 TDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSL--------KSHSVDL 540 +RRT E+ + TL+ + +IE+ + + +SN+G+I+ L K + Sbjct: 479 ----KRRT---ELMVGEVLTLEDEDLIEETDVLITLSNKGYIKRLDQGEFTAQKRGGRGV 531 Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLLSGRG 585 K+ D ++ + T D +L + G+ Y LP NLL Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLK-LD 590 Query: 586 HGEAIQLLIDLN 597 GE+IQ +I+++ Sbjct: 591 EGESIQTIINVD 602 >gi|217965928|ref|YP_002351606.1| DNA gyrase, A subunit [Listeria monocytogenes HCC23] gi|255022517|ref|ZP_05294503.1| DNA gyrase, A subunit [Listeria monocytogenes FSL J1-208] gi|290892045|ref|ZP_06555042.1| DNA gyrase subunit A [Listeria monocytogenes FSL J2-071] gi|217335198|gb|ACK40992.1| DNA gyrase, A subunit [Listeria monocytogenes HCC23] gi|290558639|gb|EFD92156.1| DNA gyrase subunit A [Listeria monocytogenes FSL J2-071] gi|307569530|emb|CAR82709.1| DNA gyrase, A subunit [Listeria monocytogenes L99] Length = 842 Score = 417 bits (1072), Expect = e-114, Method: Compositional matrix adjust. Identities = 228/571 (39%), Positives = 355/571 (62%), Gaps = 22/571 (3%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 + + ++L + +L YA+S I RA+PD+RDG KPVHRRI++AM+++G+ A+KK Sbjct: 7 QRITEINLNKEMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYAMNDLGMTSDKAYKK 66 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 SARIVGEVIGK HPHGD +VY ++VR+AQ F R L+ G GNFG++DGD AAA RYTEA Sbjct: 67 SARIVGEVIGKYHPHGDTAVYFTMVRMAQDFSYRNMLVDGHGNFGSVDGDMAAAMRYTEA 126 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 RM++++ +L+ +++D +D+ D Y+ + EPV+ P++FPNLL NG+SGIAVGMAT+IP+H Sbjct: 127 RMSKISMELLRDINKDTIDYADNYDGSEREPVILPARFPNLLVNGSSGIAVGMATNIPTH 186 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 ++ E+ + LAL NPEI+I L+EYI GPDFPT G+I+ R I +Y GRG VR Sbjct: 187 HLGEVIDGVLALSHNPEITIRDLMEYIPGPDFPTAGMIM-GRSGIRRAYESGRGSITVRG 245 Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314 R +EE G IV+TEIPYQV K+RL+E+IAEL K+I + + DES ++ Sbjct: 246 RVDIEEKKNGKETIVITEIPYQVNKARLVERIAELAREKKIDGITSLNDESDRSGMRIVI 305 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 R + +++ ++F ++ ++T F +NM L + P+V+ L IL +L H++ V+ R Sbjct: 306 EVRRDISASVIVNNLFKMTALQTTFGINMLAL-VDNHPKVLNLKEILYHYLEHQKVVIRR 364 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAI 431 R+ F ++ + R IL+GL IA NID II +IR D K ++++F+L++ Q AI Sbjct: 365 RTEFELRKAEARAHILEGLRIALDNIDAIIKLIRGSKTSDVAKEGLMTQFNLSDKQAQAI 424 Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491 L++RL+ L LE +I+ E NL+A + ++L ++ I E+ E+K ++ Sbjct: 425 LDMRLQRLTGLEREKIEEEYQNLVALINDLKAILADDERILEIIREELEEIKVKYAD--- 481 Query: 492 LGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWI--------RSLKSHSVDLSA 542 +RRT E+ D +L+ + +I +E + + ++ RG+I RS + + Sbjct: 482 --KRRT---EILAGDLVSLEDEDLIPEEEVAITLTKRGYIKRLPLSTYRSQRRGGRGIQG 536 Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573 + E D ++ + T D +L + GK Y Sbjct: 537 MSTHEDDFVEHLVATSTHDTLLFFTNTGKVY 567 >gi|157144816|ref|YP_001452135.1| DNA gyrase subunit A [Citrobacter koseri ATCC BAA-895] gi|157082021|gb|ABV11699.1| hypothetical protein CKO_00543 [Citrobacter koseri ATCC BAA-895] Length = 878 Score = 417 bits (1072), Expect = e-114, Method: Compositional matrix adjust. Identities = 276/747 (36%), Positives = 412/747 (55%), Gaps = 69/747 (9%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + V++ L+ YL YA+S I RA+PD+RDG KPVHRR+++AM+ +G D+ A+KKSA Sbjct: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG+IDGDSAAA RYTE R+ Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 ++A ++ ++++ VDF D Y+ + P V P+K PNLL NG+SGIAVGMAT+IP HN+ Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 +E+ LA ID+ +ISIE L+EYI GPDFPT II R I E+YR GRG +RAR Sbjct: 188 KEVINGCLAYIDDEDISIEGLMEYIPGPDFPTAAII-NGRRGIEEAYRTGRGKVYIRARA 246 Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314 VE + G I+V EIPYQV K+RLIEKIAEL+ KR+ + +RDES +D +RIV+ Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKDGMRIVIE 306 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K ++ ++++ +++ + ++ F +NM L G+ P++M L I+ ++ HRREV+ R Sbjct: 307 VKRDAVG-EVVLNNLYSQTQLQVSFGINMVALHHGQ-PKIMNLKEIISAFVRHRREVVTR 364 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----------- 420 R+ F ++ R IL+ L IA NID II +IR P K ++SR Sbjct: 365 RTIFELRKARDRAHILEALAIALANIDPIIEMIRRAPTPAEAKAALISRSWDLGNVASML 424 Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457 + LTE Q AIL+LRL+ L LE ++ E LL + Sbjct: 425 ERAGDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQ 484 Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517 ++ +L S + I E+ +++ F G R T + AD + +I + Sbjct: 485 IAELLHILGSADRLMEVIREEMELIRDQF------GDERRTEITANSADINI--EDLISQ 536 Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569 E + V +S++G+++ + + SA KE D + L A+T D IL S+ Sbjct: 537 EDVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSR 596 Query: 570 GKAYTLPAGNLL-SGRG-HGEAIQLLIDLNHNQDIVTAFV----YDSTCKLLVVSSKGNA 623 G+ Y + L + RG G I L+ L ++ I TA + Y+ + + ++ G Sbjct: 597 GRLYWMKVYQLPEASRGARGRPIVNLLPLEADERI-TAILPVREYEEGVNVFMATASGTV 655 Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMS 682 +E G + ++ +++ V +G D V + K++ F D + M Sbjct: 656 KKTALTEFSRPRSAGIIAVNLNEGDELIGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAMG 715 Query: 683 R-GKGVRLQSYKDGGISDVICFKICEG 708 R GVR K G V+ I G Sbjct: 716 RTATGVR--GIKLAGEDSVVSLIIPRG 740 >gi|73916216|gb|AAZ92976.1| DNA gyrase subunit A [Streptococcus pneumoniae] gi|73916222|gb|AAZ92979.1| DNA gyrase subunit A [Streptococcus pneumoniae] gi|73916224|gb|AAZ92980.1| DNA gyrase subunit A [Streptococcus pneumoniae] gi|73916226|gb|AAZ92981.1| DNA gyrase subunit A [Streptococcus pneumoniae] Length = 822 Score = 417 bits (1072), Expect = e-114, Method: Compositional matrix adjust. Identities = 257/706 (36%), Positives = 414/706 (58%), Gaps = 38/706 (5%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 ++N+ V+L ++ ++ YA+S I RA+PD+RDG KPVHRRI++ M+E+G+ K Sbjct: 3 DKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHK 62 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSARI G+V+GK HPHGD S+Y+++VR+AQ + RY L+ G GNFG++DGDSAAA RYTE Sbjct: 63 KSARITGDVMGKYHPHGDYSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYTE 122 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 ARM+++A +L+ ++++ VDF D Y+ + EP+V P++FPNLL NG +GIAVGMAT+IP Sbjct: 123 ARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIPP 182 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E +A ++DNPE++ + L+E + GPDFPTG +++ + I ++Y G+G +R Sbjct: 183 HNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVM-GKSGIHKAYETGKGSIVLR 241 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312 +R +E G IVVTE PY V K+++ E I L+ KRI + +RDES E VR V Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 + K R ++++ ++F ++ M+T F NM + G +P+++ L IL ++ H++EV+ Sbjct: 302 IEVK-RDASANVILNNLFKMTQMQTNFGFNMLAIQNG-IPKILSLRQILDAYIEHQKEVV 359 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVD 429 RR+ F + + R IL+GLLIA +IDE+I IIR + + + ++S+F L+E Q Sbjct: 360 VRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSKFKLSERQSQ 419 Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489 AIL++RLR L LE +I+SE D+LLA + +L ++ I E+ EVK FS Sbjct: 420 AILDMRLRRLTGLERDKIQSEYDDLLALIADLADILAKPERVSQIIKDELDEVKRKFSD- 478 Query: 490 TDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSL--------KSHSVDL 540 +RRT E+ +L+ + +IE+ + + +SNRG+I+ L K + Sbjct: 479 ----KRRT---ELMVGQILSLEDEDLIEESDVLITLSNRGYIKRLDQDEFTAQKRGGRGV 531 Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS-GR-GHGEAIQLLIDLNH 598 K+ D ++ + T D +L + G+ Y L + GR G + L+ L+ Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDE 591 Query: 599 NQDIVTAFVYDS----TCKLLVVSSKGNAFIVEESEI--IANTRK-GKTFLKVSSEEKMK 651 ++ I T +S L + G IV+ + + AN R+ G L + E+++ Sbjct: 592 DESIQTVINVESDRSDDAYLFFTTRHG---IVKRTSVKEFANIRQNGLKALNLKDEDELI 648 Query: 652 LVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSR-GKGVRLQSYKDG 695 V+ GD ++G + F+ + MSR GV+ + ++G Sbjct: 649 NVLLTEGDMDIIIGTKFGYAVRFNQSAVRGMSRIATGVKGVNLREG 694 >gi|322387956|ref|ZP_08061563.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus infantis ATCC 700779] gi|321141229|gb|EFX36727.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus infantis ATCC 700779] Length = 822 Score = 417 bits (1072), Expect = e-114, Method: Compositional matrix adjust. Identities = 256/711 (36%), Positives = 411/711 (57%), Gaps = 55/711 (7%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 ++N+ V+L ++ ++ YA+S I RA+PD+RDG KPVHRRI++ M+E+G+ K Sbjct: 3 DKNLVNVNLTKEMKTSFIDYAMSVIVSRALPDVRDGLKPVHRRILYGMNELGVTPDKPHK 62 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSARI G+V+GK HPHGD S+Y+++VR+AQ + RY L+ G GNFG++DGD AAA RYTE Sbjct: 63 KSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYTE 122 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 ARM+++A +L+ ++++ VDF D Y+ + EPVV P++FPNLL NG +GIAVGMAT+IP Sbjct: 123 ARMSKIALEMLRDINKNTVDFVDNYDANEREPVVLPARFPNLLVNGATGIAVGMATNIPP 182 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E +A ++DNPE++ + L+E + GPDFPTG +++ + I ++Y G+G +R Sbjct: 183 HNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVM-GKSGIHKAYETGKGSIVLR 241 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312 +R +EE G IVVTE PY V K+++ E I L+ KRI + +RDES E VR V Sbjct: 242 SRTEIEETKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVRFV 301 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 + + R ++++ ++F ++ M+T F NM + G VP+++ L IL ++ H++EV+ Sbjct: 302 IEVR-RDASANVILNNLFKMTQMQTSFGFNMLAIQNG-VPKILSLRQILDAYIEHQKEVV 359 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVD 429 RR+ F + + R IL+GLLIA +IDE+I IIR + + + ++S+F L+E Q Sbjct: 360 TRRTQFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDQEAQAELMSKFKLSERQSQ 419 Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489 AIL++RLR L LE +I+SE D L+A + +L ++ I E+ EVK + Sbjct: 420 AILDMRLRRLTGLERDKIQSEYDELIALIADLADILAKPERVAQIIKEELDEVKRKYED- 478 Query: 490 TDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSL--------KSHSVDL 540 +RRT E+ + TL+ + +IE+ + + +SN+G+I+ L K + Sbjct: 479 ----KRRT---ELMVGEVLTLEDEDLIEESDVLITLSNKGYIKRLDQDEFTAQKRGGRGV 531 Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLLSGRG 585 K+ D ++ + T D +L + G+ Y LP NLL Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLK-LD 590 Query: 586 HGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK-GKTFLKV 644 GE+IQ +I++ + A+++ +T +V + F AN R+ G L + Sbjct: 591 EGESIQTIINIESERSD-DAYIFFTTRAGIVKRTSVKEF--------ANIRQNGLKALNL 641 Query: 645 SSEEKMKLVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSRG----KGVRLQ 690 E+++ V+ D ++G + F+ + MSR KGV L+ Sbjct: 642 KDEDELINVLLTQEDTDIIIGTKLGYAVRFNQSSVRSMSRSATGVKGVNLR 692 >gi|221639040|ref|YP_002525302.1| DNA gyrase subunit A [Rhodobacter sphaeroides KD131] gi|221159821|gb|ACM00801.1| DNA gyrase subunit A (Dna topoisomerase ii (Subunit a)) [Rhodobacter sphaeroides KD131] Length = 920 Score = 417 bits (1072), Expect = e-114, Method: Compositional matrix adjust. Identities = 261/699 (37%), Positives = 397/699 (56%), Gaps = 61/699 (8%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 VS+ ++ YL YA+S I RAIPDLRDG KPVHRRI++AM E G ++KSAR V Sbjct: 24 VSIAEEMKTAYLDYAMSVIVSRAIPDLRDGLKPVHRRILYAMHETGNTSDKPYRKSARPV 83 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+ +GK HPHGD ++YD+LVR+AQPF L+ GQGNFG++DGD+AAA RYTE RM + Sbjct: 84 GDTMGKYHPHGDGAIYDALVRMAQPFSMGLKLLDGQGNFGSMDGDNAAAMRYTEVRMDKP 143 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A +L +D+D VDF+D Y+ +D EP V P++FPN+L NG GIAVGMAT+IP HN+ E+ Sbjct: 144 AAFLLADIDKDTVDFQDNYDGKDREPTVLPARFPNMLVNGAGGIAVGMATNIPPHNLGEV 203 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 +A LA+I+NP+IS E+L+E I GPDFPTGG+I+ R ++Y GRG +RA+ VE Sbjct: 204 VDATLAMIENPDISTERLMEIIPGPDFPTGGVIL-GRSGARKAYLEGRGSVIMRAKARVE 262 Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE-DVRIVLFPKNR 318 E+ + + IV+ EIPYQV K+ +IEKIA+++ K+I + ++DES VR+V+ K R Sbjct: 263 EIRKDRYAIVLDEIPYQVNKATMIEKIADMVREKKIEGIAHVQDESDRVGVRVVIELK-R 321 Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378 P++++ ++ + M+T F NM L+ GR P+ + L L +L R +V+ RR+++ Sbjct: 322 DATPEVVLNQLWRFTPMQTTFGCNMLALNGGR-PEQLTLRDFLIHFLTFREDVVARRTAY 380 Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP----KPVMVSR-------------- 420 ++ R IL GL +A N+DE++A IR+ P + +M R Sbjct: 381 ELRKARERSHILCGLAVAVSNVDEVVATIRSSADPAEARERLMTRRWPAADIADYIRLID 440 Query: 421 -----------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGK 469 ++L+E Q AIL+LRL+ L + ++ EL L A+ +L S + Sbjct: 441 DPSHTINEDGTYNLSEIQARAILDLRLQRLTAMGVKEVTDELAELAAKIRDYLDILGSRE 500 Query: 470 QQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW 529 + I+ E+REVK++F+ RRT E+S + +IE+E + V I++ G+ Sbjct: 501 RIMAIISDELREVKDLFAVP-----RRT---EISEWAGDLEDEDLIEREDMVVTITSGGY 552 Query: 530 I--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL- 580 I RS + L+++ KE D + A+T ++L +TDG Y L L Sbjct: 553 IKRTPLAEFRSQRRGGKGLASMATKEDDVVTTLFVANTHTQLLFFTTDGMVYDLKCWRLP 612 Query: 581 LSGR-GHGEAIQLLIDLNHNQDIVTAFVYDST----CKLLVVSSKGNAFIVEESEIIANT 635 L GR G+AI ++ + I D +L VV F E ++ N Sbjct: 613 LGGRTAKGKAIVNILPIATGISIAALMKIDEPEEEWDRLQVV------FATSEGDVRRNR 666 Query: 636 RKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFS 674 T +K + + MKL V+ +V++ E +++ + Sbjct: 667 LSDFTNVKRNGKIAMKLPEGVSLVNVSICDEQDDVMMVT 705 >gi|145218988|ref|YP_001129697.1| DNA gyrase subunit A [Prosthecochloris vibrioformis DSM 265] gi|145205152|gb|ABP36195.1| DNA gyrase subunit A [Chlorobium phaeovibrioides DSM 265] Length = 827 Score = 417 bits (1072), Expect = e-114, Method: Compositional matrix adjust. Identities = 263/759 (34%), Positives = 415/759 (54%), Gaps = 35/759 (4%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 + + V++ + YL Y++S I RA+PD+RDG KPVHRR+++ M E+GL G KK Sbjct: 4 QRILPVTIEEEMRGSYLDYSMSVIVSRALPDVRDGLKPVHRRVLYGMHELGLQAGKPHKK 63 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 SAR+VGEV+GK HPHGD +VYDSLVR+ Q F RYPLI GQGNFG++DGDS AA RYTE Sbjct: 64 SARVVGEVLGKFHPHGDSAVYDSLVRMVQDFSLRYPLIDGQGNFGSVDGDSPAAMRYTEV 123 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 RM +A +L+ +D++ V++ +++ EP V PS PNLL NG SGIAVGMAT+IP Sbjct: 124 RMKAIAGEMLKDLDKETVEYSLNFDDSLEEPTVLPSSIPNLLVNGASGIAVGMATNIPPQ 183 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 N++E+ + ALIDNP+I IE+L++++I PDFPTGGII E + +Y GRG +RA Sbjct: 184 NLREVVDGMTALIDNPDIEIEELMKHVIAPDFPTGGIIY-GYEGVRLAYTTGRGKVVIRA 242 Query: 255 RWCVEEVGR-GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313 R VE + G IVVTE+PYQV K RLIEKI EL+ K++ + DIRDES D ++ Sbjct: 243 RALVEVTQKNGRESIVVTELPYQVNKVRLIEKIVELVHDKKVEGIADIRDESDRDGMRLV 302 Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373 R +++ +++ + M+ F + M L G VP+V+ L +++ ++ HR E++ Sbjct: 303 IELKRDAVAKVVLNNLYKHTPMQDTFGVIMLALVDG-VPRVLNLKEMMQFYIQHRNEIVL 361 Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDA 430 RR+ + + A ++R IL+GL I N+DE+I IR + + + ++ RF L+E Q A Sbjct: 362 RRTRYDLTAAEKRAHILEGLKICLDNLDEVITTIRESPDANTAQARLIERFGLSELQSKA 421 Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490 IL +RL+ L +E +I E +A E++ +L S ++Q I E+ +V+E++ Sbjct: 422 ILEMRLQRLTGMERKKIDLEYAETIALIEELRDILASPERQMQIIRTELLKVREVYGDE- 480 Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DLSA 542 RRT E+ + + MI +E + + I++ G+I+ ++ Sbjct: 481 ----RRT---EIVPQEGDFSIEDMIAQEDVVITITHDGFIKRFPVSGYRRQARGGKGVTG 533 Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEAIQLLIDLNHNQ 600 K D ++ A T + IL +++G+ Y L + +GR G ++ +++LN + Sbjct: 534 AQAKNDDFIEHMFVASTHNYILFFTSNGRCYWLKVYEIPEAGRAARGRSLANIMELNPGE 593 Query: 601 DIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657 I T +D +++ ++ G E R G + + + + + Sbjct: 594 TIKTYINIRNFDEPGFIMMATADGIVKKTALEEFSRPRRNGIAAITIDTGDALLDARLTD 653 Query: 658 GDHVAVVGENRKLLI-FSIDQIPEMSRG----KGVRLQSYKDGGISDVICFKICEGLTWI 712 GDH ++ ++ L++ F Q+ M R KG+ L + IS V ++ L + Sbjct: 654 GDHQVILAKSSGLVVRFPESQVRPMGRTAMGVKGITLDR-GEKCISMVTTKRLDTALLAV 712 Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751 G D L KRG G + K + G + Sbjct: 713 TDNGFGKRSKVEDY--RLTKRGARGVITLKAHEKIGALV 749 >gi|124008334|ref|ZP_01693029.1| DNA gyrase, A subunit [Microscilla marina ATCC 23134] gi|123986123|gb|EAY25959.1| DNA gyrase, A subunit [Microscilla marina ATCC 23134] Length = 865 Score = 417 bits (1072), Expect = e-114, Method: Compositional matrix adjust. Identities = 266/771 (34%), Positives = 431/771 (55%), Gaps = 62/771 (8%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 +++ ++ Y+ YA+S I RA+PD+RDG KPVHRR+++ MS++GL F FKKSARIV Sbjct: 11 INIEDEMKSAYIDYAMSVIISRALPDVRDGLKPVHRRVLYGMSDLGLMFNKPFKKSARIV 70 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 GEV+GK HPHGD SVYD++VR+AQP+ RYPL+ GQGNFG+IDGDS AA RYTEAR+ +V Sbjct: 71 GEVLGKYHPHGDASVYDTMVRMAQPWSLRYPLVDGQGNFGSIDGDSPAAMRYTEARLKRV 130 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A+ +L +++D +DF+ ++E EP V P K P+LL NGTSGIAVGMAT++P HN+ E+ Sbjct: 131 ADELLSDLNKDTIDFQPNFDESLKEPTVLPCKIPHLLINGTSGIAVGMATNMPPHNLTEV 190 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 + +A +DN +I++E+L++YI PDFPTGGII + + ++ GRG +R +E Sbjct: 191 VDGIIAYLDNNDITVEELIQYIPAPDFPTGGIIY-GYQGVKKAMLTGRGRVVIRGVAEIE 249 Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319 G I+VTEIPY V K+ LIEK A L+ KRI + DIRDES +++ R Sbjct: 250 TTKSGRERIIVTEIPYLVNKANLIEKTAHLVQEKRIEGISDIRDESDRTGMRIVYELKRD 309 Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379 P + + ++ + +++ F +N L GR P+++ L ++ ++ HR EV++RR+ F Sbjct: 310 AVPMVTLNQLYKYTALQSSFGVNNVALVKGR-PEILNLRDMIYHFVEHRHEVIYRRTQFE 368 Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAILNLRL 436 ++ R IL+GLLIA NIDE+I +IR + + K ++ +F L+E Q AIL++RL Sbjct: 369 LKEAKARQHILEGLLIALDNIDEVITLIRASKDGETAKNALIEKFELSEIQAKAILDIRL 428 Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496 + L +E +I +E + ++++++L + + I E+ E+K+ + + RR Sbjct: 429 QRLTAMERDKIVAEHKQISELIKELEAILADKLLRVDIIKEELTEMKDRYGDA-----RR 483 Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEG 548 T + AD T + MI E + + IS+ G+I R+ V K+ Sbjct: 484 TDIEHM--ADDLT-DEDMIPVEEMVITISHFGYIKRTSLDEYRTQNRGGVGSRGTSKKDD 540 Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAF 606 D + A T D +L+ + GK + + N+ ++ G AIQ L+ + D + A Sbjct: 541 DFTEHLFVASTHDYLLIFTNSGKVFWIKGYNIPEVAKTAKGRAIQNLLQMEKG-DSIRAV 599 Query: 607 V---------YDSTCKLLVVSSKGNAFIVEESEIIANTR---KGKTFLKVSSEEKMKLVV 654 + Y+ L++ + KG I++++ + A +R G + ++ ++++ L V Sbjct: 600 INVKQLQDPDYNQNHYLVMCTEKG---IIKKTRLEAFSRPRQNGIHAITINEDDQL-LDV 655 Query: 655 KVTGDHVAVVGENRKLLI--------FSIDQIPEMSRG----KGVRLQSYKDGGISDVIC 702 K+T GEN +L F DQ+ M R +G+ L D + ++C Sbjct: 656 KLTN------GENNIILAIRSGRAIHFHEDQVRSMGRTAAGVRGITLDG-DDNRVVGMVC 708 Query: 703 FKICEG-LTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752 + L + G S D + RGG G + + ++G+ ++ Sbjct: 709 VARDDASLLVVSETGYGKRSSIEDY--RITNRGGKGVITMQITDKTGRLVA 757 >gi|316934206|ref|YP_004109188.1| DNA gyrase subunit A [Rhodopseudomonas palustris DX-1] gi|315601920|gb|ADU44455.1| DNA gyrase, A subunit [Rhodopseudomonas palustris DX-1] Length = 913 Score = 417 bits (1072), Expect = e-114, Method: Compositional matrix adjust. Identities = 254/695 (36%), Positives = 378/695 (54%), Gaps = 61/695 (8%) Query: 4 DNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63 D+ L +++ VS+ ++ YL YA+S I RA+PD RDG KPVHRRI++ M E Sbjct: 5 DDEKPGEPLAPSDIRPVSILDEMKRSYLDYAMSVIVARALPDARDGLKPVHRRILYGMYE 64 Query: 64 MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123 G ++ ++KSAR VG+VIGK HPHGDQSVYD+LVR+AQ F R PLI GQGNFG++DG Sbjct: 65 NGFEWNKPYRKSARTVGDVIGKYHPHGDQSVYDALVRMAQDFSMRVPLIDGQGNFGSVDG 124 Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183 D AA RYTE+R+T++A+ +L +D+D VDF+ Y+ + EP V P+KFPNLL NG GI Sbjct: 125 DMPAAMRYTESRLTKIAQTLLDDIDKDTVDFQPNYDNSEREPQVLPAKFPNLLVNGAGGI 184 Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243 AVGMAT+IP HN+ E+ +A +ALID+P ++I+ L + + GPDFPTGGII+ R I +Y Sbjct: 185 AVGMATNIPPHNLGEVIDACVALIDDPALTIDDLNKIVPGPDFPTGGIIL-GRSGIRSAY 243 Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303 + GRG +R + +E V + I+V+EIPYQV K+ ++E+IAEL+ K+I + D+RD Sbjct: 244 QTGRGSIVMRGKVEIETVRKDREAIIVSEIPYQVNKATMVERIAELVREKKIEGISDLRD 303 Query: 304 ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363 ES D V+ R P++++ ++ + ++T F NM L GR PQ+M L +L Sbjct: 304 ESDRDGFRVVIELRRDAVPEVVLNQLYKFTPLQTNFGANMVALEGGR-PQLMNLKDLLTV 362 Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK--------- 414 ++A R +V+ RR+ F + R IL GL IA NIDEII +IRN P Sbjct: 363 FVAFREQVVTRRTKFLLNKARDRAHILVGLAIAVANIDEIIRVIRNSPDPNTARETLMSR 422 Query: 415 -------PVMVS-----RFSLTEN--------QVDAILNLRLRSLRKLEEYQIKSELDNL 454 M++ R L E+ Q AIL+LRL+ L L +I ELD L Sbjct: 423 DWPAADVAAMITLIDDPRHKLNEDGTARLSFEQAKAILDLRLQRLTALGREEISDELDKL 482 Query: 455 LAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAM 514 E +L S + + E+ VK F+ R+T E + + + Sbjct: 483 AVEIADYLEILRSRARVQTIVKDELGAVKAEFATP-----RKTVIVE---QEGEVEDEDL 534 Query: 515 IEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLL 566 I++E + V +S+ G++ R+ + S + +E D + A T +L Sbjct: 535 IQREDMVVTVSHAGYVKRVPLSTYRAQRRGGKGRSGMATREEDFVSRLFVASTHTPVLFF 594 Query: 567 STDGKAYT-----LPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD------STCKLL 615 S+ G+ Y LP L G G+A+ ++ L + I T S ++ Sbjct: 595 SSRGQVYKEKVWRLP---LAPPNGRGKALINILPLEQGERITTIMPLPEDEASWSELDVM 651 Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM 650 ++ GN + S+ + R G +K+ E + Sbjct: 652 FATTGGNVRRNKLSDFVDVRRSGIIAMKLDDGEAI 686 >gi|262274466|ref|ZP_06052277.1| DNA gyrase subunit A [Grimontia hollisae CIP 101886] gi|262221029|gb|EEY72343.1| DNA gyrase subunit A [Grimontia hollisae CIP 101886] Length = 875 Score = 417 bits (1072), Expect = e-114, Method: Compositional matrix adjust. Identities = 275/736 (37%), Positives = 403/736 (54%), Gaps = 86/736 (11%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + V++ L+ YL YA+S I RA+PD+RDG KPVHRR++ AM+ +G D+ A+KKSA Sbjct: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKKSA 67 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG+IDGDSAAA RYTE RM Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVRM 127 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 ++A +L +D++ VD+ Y+ + P V P++ PNLL NG SGIAVGMAT+IP HN+ Sbjct: 128 AKIAHELLADLDKETVDYVPNYDGTEQIPEVMPTRIPNLLVNGASGIAVGMATNIPPHNL 187 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ LA I+N +I+IE+L+ +I GPDFPT +I R+ I ++YR GRG +R++ Sbjct: 188 TEVVNGCLAYIENEDITIEELMTHIPGPDFPTAAMI-NGRKGIEDAYRTGRGKIYLRSKA 246 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFP 315 +E G IVVTEIPYQV K+RLIEKIAEL+ K+I + +RDES +D +RIV+ Sbjct: 247 DIETDKNGKETIVVTEIPYQVNKARLIEKIAELVKDKKIEGISALRDESDKDGMRIVIEC 306 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 K R ++++ +++ + ++T F +NM L + P++ L +LK ++ HRREV+ RR Sbjct: 307 K-RDAVAEVILNNLYAQTQLQTSFGINMVALDNNQ-PRLFNLKDMLKCFVNHRREVVTRR 364 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---------------------- 413 + F ++ R IL+GL IA NIDEII +IRN P Sbjct: 365 TIFELRKARDRAHILEGLAIALANIDEIIELIRNAQTPAVAREALQNRGWDLGTVAVMLE 424 Query: 414 -------KP--------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458 +P V ++ LTE Q AIL+LRL L LE +I E LL Sbjct: 425 ATGVDAARPEWLEDEFGVRDGKYYLTEQQAQAILDLRLHKLTGLEHEKILDEYKELLTLI 484 Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518 ++ +L+S ++ I E+ V++ F RRT E++ A + +I +E Sbjct: 485 GELMFILSSPERLMEVIREELEAVRDGFGDE-----RRT---EITAASADIDIEDLINQE 536 Query: 519 PITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570 + V +S+ G+++ + + SA KE D ++ L A+T D IL ST G Sbjct: 537 DVVVTLSHEGYVKYQPLTDYEAQRRGGKGKSATRMKEEDFIERLLVANTHDTILCFSTRG 596 Query: 571 -----KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVT----------AFVYDSTCKLL 615 K Y LP L S G+ I L+ L ++ I FV+ +T Sbjct: 597 RMYWLKVYQLP---LASRTARGKPIVNLLPLEQDERITAILPVKEYEDDKFVFMATSDGT 653 Query: 616 VVSSKGNAFIVEESE--IIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIF 673 V + F S I N R+G + + V + + V + ++ K++ F Sbjct: 654 VKKTPLTDFSRPRSAGIIAVNLREGDSLIGVD--------ITWGDNDVMLFSKSGKVVRF 705 Query: 674 SIDQIPEMSR-GKGVR 688 Q+ M R GVR Sbjct: 706 HESQVRAMGRTAAGVR 721 >gi|157161714|ref|YP_001459032.1| DNA gyrase subunit A [Escherichia coli HS] gi|157067394|gb|ABV06649.1| DNA gyrase, A subunit [Escherichia coli HS] Length = 875 Score = 417 bits (1072), Expect = e-114, Method: Compositional matrix adjust. Identities = 256/659 (38%), Positives = 382/659 (57%), Gaps = 65/659 (9%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + V++ L+ YL YA+S I RA+PD+RDG KPVHRR+++AM+ +G D+ A+KKSA Sbjct: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG+IDGDSAAA RYTE R+ Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 ++A ++ ++++ VDF D Y+ + P V P+K PNLL NG+SGIAVGMAT+IP HN+ Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ LA ID+ +ISIE L+E+I GPDFPT II R I E+YR GRG +RAR Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAII-NGRRGIEEAYRTGRGKVYIRARA 246 Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314 VE + G I+V EIPYQV K+RLIEKIAEL+ KR+ + +RDES +D +RIV+ Sbjct: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K ++ ++++ +++ + ++ F +NM L G+ P++M L I+ ++ HRREV+ R Sbjct: 307 VKRDAVG-EVVLNNLYSQTQLQVSFGINMVALHHGQ-PKIMNLKDIIAAFVRHRREVVTR 364 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----------- 420 R+ F ++ R IL+ L +A NID II +IR+ P K +V+ Sbjct: 365 RTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAML 424 Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457 + LTE Q AIL+LRL+ L LE ++ E LL + Sbjct: 425 ERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQ 484 Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517 ++ +L S + I E+ V+E F G +R T + AD + +I + Sbjct: 485 IAELLRILGSADRLMEVIREELELVREQF------GDKRRTEITANSADINL--EDLITQ 536 Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569 E + V +S++G+++ + + SA KE D + L A+T D IL S+ Sbjct: 537 EDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSR 596 Query: 570 GKAYTLPAGNLL-SGRG-HGEAIQLLIDLNHNQDIVTAFV----YDSTCKLLVVSSKGN 622 G+ Y++ L + RG G I L+ L ++ I TA + ++ K+ + ++ G Sbjct: 597 GRVYSMKVYQLPEASRGARGRPIVNLLPLEQDERI-TAILPVTEFEEGVKVFMATANGT 654 >gi|200387865|ref|ZP_03214477.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|199604963|gb|EDZ03508.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar Virchow str. SL491] Length = 878 Score = 417 bits (1072), Expect = e-114, Method: Compositional matrix adjust. Identities = 276/747 (36%), Positives = 411/747 (55%), Gaps = 69/747 (9%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + V++ L+ YL YA+S I RA+PD+RDG KPVHRR+++AM+ +G D+ A+KKSA Sbjct: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD +VY+++VR+AQPF RY L+ GQGNFG+IDGDSAAA RYTE R+ Sbjct: 68 RVVGDVIGKYHPHGDSAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 ++A ++ ++++ VDF D Y+ + P V P+K PNLL NG+SGIAVGMAT+IP HN+ Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ LA IDN +ISIE L+E+I GPDFPT II R I E+YR GRG +RAR Sbjct: 188 TEVINGCLAYIDNEDISIEGLMEHIPGPDFPTAAII-NGRRGIEEAYRTGRGKVYIRARA 246 Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314 VE + G I+V EIPYQV K+RLIEKIAEL+ KR+ + +RDES +D +RIV+ Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKDGMRIVIE 306 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K ++ ++++ +++ + ++ F +NM L G+ P++M L I+ ++ HRREV+ R Sbjct: 307 VKRDAVG-EVVLNNLYSQTQLQVSFGINMVALHHGQ-PKIMNLKDIISAFVRHRREVVTR 364 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----------- 420 R+ F ++ R IL+ L IA NID II +IR P K ++SR Sbjct: 365 RTIFELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAALISRPWDLGNVAAML 424 Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457 + LTE Q AIL+LRL+ L LE ++ E LL + Sbjct: 425 ERAGDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQ 484 Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517 ++ +L S + I E+ +++ F G R T + AD + +I + Sbjct: 485 IAELLHILGSADRLMEVIREEMELIRDQF------GDERRTEITANSADINI--EDLISQ 536 Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569 E + V +S++G+++ + + SA KE D + L A+T D IL S+ Sbjct: 537 EDVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSR 596 Query: 570 GKAYTLPAGNLL-SGRG-HGEAIQLLIDLNHNQDIVTAFV----YDSTCKLLVVSSKGNA 623 G+ Y + L + RG G I L+ L N+ I TA + Y+ + + ++ G Sbjct: 597 GRLYWMKVYQLPEASRGARGRPIVNLLPLEANERI-TAILPVREYEEGVNVFMATASGTV 655 Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMS 682 +E G + ++ +++ V +G D V + K++ F D + M Sbjct: 656 KKTALTEFSRPRSAGIIAVNLNDGDELIGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAMG 715 Query: 683 R-GKGVRLQSYKDGGISDVICFKICEG 708 R GVR K G V+ I G Sbjct: 716 RTATGVR--GIKLAGDDKVVSLIIPRG 740 >gi|324112768|gb|EGC06744.1| hypothetical protein ERIG_02373 [Escherichia fergusonii B253] Length = 878 Score = 417 bits (1072), Expect = e-114, Method: Compositional matrix adjust. Identities = 256/659 (38%), Positives = 381/659 (57%), Gaps = 65/659 (9%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + V++ L+ YL YA+S I RA+PD+RDG KPVHRR+++AM+ +G D+ A+KKSA Sbjct: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG+IDGDSAAA RYTE R+ Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 ++A ++ ++++ VDF D Y+ + P V P+K PNLL NG+SGIAVGMAT+IP HN+ Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ LA ID+ +ISIE L+E+I GPDFPT II R I E+YR GRG +RAR Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAII-NGRRGIEEAYRTGRGKVYIRARA 246 Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314 VE + G I+V EIPYQV K+RLIEKIAEL+ KR+ + +RDES +D +RIV+ Sbjct: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K ++ ++++ +++ + ++ F +NM L G+ P++M L I+ ++ HRREV+ R Sbjct: 307 VKRDAVG-EVVLNNLYSQTQLQVSFGINMVALHHGQ-PKIMNLKDIIAAFVRHRREVVTR 364 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----------- 420 R+ F ++ R IL+ L +A NID II +IR+ P K +V+ Sbjct: 365 RTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAML 424 Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457 + LTE Q AIL+LRL+ L LE ++ E LL + Sbjct: 425 ERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQ 484 Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517 ++ +L S + I E+ V+E F G +R T + AD + +I + Sbjct: 485 IAELLRILGSADRLMEVIREELELVREQF------GDKRRTEITANSADINL--EDLITQ 536 Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569 E + V +S++G+++ + + SA KE D + L A+T D IL S+ Sbjct: 537 EDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSR 596 Query: 570 GKAYTLPAGNLLSG-RG-HGEAIQLLIDLNHNQDIVTAFV----YDSTCKLLVVSSKGN 622 G+ Y++ L RG G I L+ L ++ I TA + ++ K+ + ++ G Sbjct: 597 GRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERI-TAILPVTEFEEGVKVFMATANGT 654 >gi|55981324|ref|YP_144621.1| DNA gyrase subunit A [Thermus thermophilus HB8] gi|9622087|gb|AAF89614.1|AF167401_1 gyrase subunit A [Thermus thermophilus] gi|55772737|dbj|BAD71178.1| DNA gyrase subunit A [Thermus thermophilus HB8] Length = 805 Score = 417 bits (1072), Expect = e-114, Method: Compositional matrix adjust. Identities = 265/751 (35%), Positives = 428/751 (56%), Gaps = 50/751 (6%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 V V + L++ ++ YA+S I +RA+PD+RDG KPV RRI+ + G+ G KS Sbjct: 3 QVLPVEITEELKQSFINYAMSVIVDRALPDVRDGLKPVQRRILFGAYQEGVLPGRKHVKS 62 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 A+IVGEV+GK HPHGD ++YD+LVR+AQP+ RYPLI GQGNFG+IDGD AA RYTEAR Sbjct: 63 AKIVGEVMGKYHPHGDAAIYDALVRMAQPWNLRYPLIDGQGNFGSIDGDPPAAQRYTEAR 122 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 ++ + +L +D+D VDFR Y+ EP V P+ PNLL NG SGIAVGMATS+P HN Sbjct: 123 LSPIGAEMLLDIDKDTVDFRPNYDGSLKEPEVLPAAIPNLLVNGASGIAVGMATSLPPHN 182 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 + E+ +A +A+I+NP I++E+++ ++ GPDFPTGG + S++ I E+Y GRG +VRA+ Sbjct: 183 LSEVVDALVAMIENPAITLEEVMRHLPGPDFPTGGKL--SKKGIKEAYATGRGSLKVRAK 240 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLF 314 VEE G+ +VVTEIPYQV K+ LI +IA L+ AK+I + +RDES + +RI + Sbjct: 241 VRVEEKGQ-RPVLVVTEIPYQVNKASLIAQIAALVKAKKIEDIVGLRDESDRQGLRIAIE 299 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K R +P +++ ++ + ++T F +N+ + G P+V+ L +++ +L HR+EV+ R Sbjct: 300 LK-RGANPQVVLNQLYKHTALQTSFTVNLLAIVDGE-PKVLSLLDLMRHYLDHRKEVVRR 357 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDKPKP--VMVSRFSLTENQVDAI 431 RS F ++ + R +L+GLLIA +IDE+IA+IR +ED PK ++ RF L+E Q AI Sbjct: 358 RSLFELRKAEERAHVLEGLLIALDHIDEVIALIRGSEDAPKARIALMERFGLSEAQAQAI 417 Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491 L++RL+ L LE ++ E L+ E ++ ++L + ++ ++ VKE + + Sbjct: 418 LDMRLQRLVALEREKLLEEYRGLMEEIARLKAILEDEARLLAEVKADLLRVKEKYGDA-- 475 Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DLSAL 543 RRT E ++ + +IE EP+ + ++ +G+++ L S L A Sbjct: 476 ---RRTLITEF---EETFNPEDLIEDEPMVITLTAQGFLKRLPLESYRAQGRGGKGLLAG 529 Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQD 601 KE D A D +LL + G+ Y L L + + G ++ L+ L +++ Sbjct: 530 RTKEEDEATHVFVADAHDDLLLFTNRGRVYRLKVYELPEMGRQARGVHVKSLLPLAEDEE 589 Query: 602 IVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKT-FLKVSSEEKMKLV---V 654 + D L+ + +G +V+ + + G+ + + +E +LV + Sbjct: 590 VAALLSVRGLDQEGYLVFATERG---LVKRTALKEYQNLGQAGLIAIRLQEGDRLVGVAL 646 Query: 655 KVTGDHVAVVGENRKLLIFSIDQIPEMSRGK----GVRLQSYKDGGISDVICFKICEGLT 710 D + + + + F ++++ R GVR + +D +S ++ K E + Sbjct: 647 SDPEDEAILATQEGQAIRFPLEEVRATGRDTQGVIGVRFKKPEDRVVS-LVVVKPGEMVD 705 Query: 711 WIDSAGRSYNR----SENDLLGWLGKRGGVG 737 + + R Y + SE L G RGG+G Sbjct: 706 LLSVSTRGYGKRTPLSEYPLQG----RGGMG 732 >gi|254446975|ref|ZP_05060442.1| DNA gyrase, A subunit [gamma proteobacterium HTCC5015] gi|198263114|gb|EDY87392.1| DNA gyrase, A subunit [gamma proteobacterium HTCC5015] Length = 867 Score = 417 bits (1072), Expect = e-114, Method: Compositional matrix adjust. Identities = 246/633 (38%), Positives = 368/633 (58%), Gaps = 63/633 (9%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 ++L + + YL YA+S I RA+PD+RDG KPVHRR+++AMSE+G D+ ++KKSARIV Sbjct: 11 INLEDEMRQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSELGNDWNKSYKKSARIV 70 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGD +VYD++VR+AQ F RY L+ GQGNFG++DGD+ AA RYTE RM ++ Sbjct: 71 GDVIGKYHPHGDSAVYDTMVRMAQDFSMRYMLVDGQGNFGSVDGDAPAAMRYTEVRMAKL 130 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A +L +D++ VDF D Y+ +SEP VFP++ P LL NG SGIAVGMAT+IP HN+ E+ Sbjct: 131 AHEMLADIDKETVDFVDNYDGSESEPTVFPTRLPALLVNGGSGIAVGMATNIPPHNINEV 190 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 + +ALID PE+ + L+E+I GPDFPT GII +R I E+YR GRG +RAR VE Sbjct: 191 IDGCVALIDEPELDVMGLMEHIPGPDFPTAGIINGAR-GIREAYRTGRGRIYMRARASVE 249 Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319 E G IVVTEIPYQV K+RL+EKIAEL+ K+I + +RDES +D ++ R Sbjct: 250 EDKNGKPYIVVTEIPYQVNKARLLEKIAELVKEKKIEGITGLRDESDKDGMRIVIELRRG 309 Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379 ++++ +++ + ++T F +NM L G+ P++M L +L+ ++AHRREV+ RR+ + Sbjct: 310 EVGEVILNNLYAQTQLQTVFGINMVALDKGQ-PRLMNLKQVLEAFIAHRREVVTRRTLYE 368 Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP------------KPVMVS-------- 419 ++ R IL+GL +A NID IIA+I+ P +P +VS Sbjct: 369 LRKARERTHILEGLAVALSNIDPIIAMIKASTNPAEARQQLIDTVWEPGVVSGMLERAGA 428 Query: 420 -----------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKID 462 + L+ Q AIL+L+L L LE+ +I E LL + ++ Sbjct: 429 DATRPDTLEDGLGLLDDGYHLSPAQAQAILDLKLHRLTGLEQDKIVEEYGELLEKIAELL 488 Query: 463 SLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITV 522 ++L + + + E+ E+++ + RRT E+ + + +I ++ + V Sbjct: 489 NILRNPDRLTEVVRDELVELRDSYGDE-----RRT---EIYQNQSDLTVEDLINEQDVVV 540 Query: 523 VISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG---- 570 +S+ G+ ++ K SA K+ D ++ A T D +L S+ G Sbjct: 541 TLSHAGYAKAQPLDDYKAQKRGGRGRSATKMKDEDFIEKLFVACTHDTLLCFSSYGKVYW 600 Query: 571 -KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602 K Y LP G S G+ I L+ L + I Sbjct: 601 KKVYELPIG---SRNARGKPIVNLLPLEEGERI 630 >gi|320156817|ref|YP_004189196.1| DNA gyrase subunit A [Vibrio vulnificus MO6-24/O] gi|319932129|gb|ADV86993.1| DNA gyrase subunit A [Vibrio vulnificus MO6-24/O] Length = 903 Score = 417 bits (1072), Expect = e-114, Method: Compositional matrix adjust. Identities = 256/646 (39%), Positives = 380/646 (58%), Gaps = 64/646 (9%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + V++ L YL YA+S I RA+PD+RDG KPVHRR+++AM+ +G D+ +KKSA Sbjct: 8 ITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKPYKKSA 67 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG+IDGDSAAA RYTE RM Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVRM 127 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 ++A +L +D++ VD+ Y+ + P V P+K PNLL NG+SGIAVGMAT+IP HN+ Sbjct: 128 AKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ + LA I+N I+I++L++YI GPDFPT +I R+ I+++Y+ GRG +R++ Sbjct: 188 TEVIDGCLAYINNEAITIDELMDYIPGPDFPTAALI-SGRKGIIDAYKTGRGKIYMRSKA 246 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFP 315 +E G I+VTEIPYQV K+RLIEKIAEL+ K++ + +RDES +D +RIV+ Sbjct: 247 EIEVEKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIEC 306 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 K ++ ++++ +++ + ++T F +NM L G+ P++ L +LK ++ HRREV+ RR Sbjct: 307 KRDAVG-EVVLNNLYAQTQLQTTFGINMVALDNGQ-PKLFNLKEMLKCFVDHRREVVTRR 364 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR------------ 420 + F ++ R IL+ L +A NIDEII +IRN P K +V+R Sbjct: 365 TIFELKKARDRAHILEALALALANIDEIIELIRNAATPAEAKAGLVARGWDLGNVAAMLE 424 Query: 421 ----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458 + LTE Q AIL+LRL L LE +I E LL E Sbjct: 425 SAGTDAARPDWLEPQYGIRDGQYFLTETQAQAILDLRLHKLTGLEHEKILDEYKALLDEI 484 Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518 +++ +L S ++ I E+ V++ F RRT E++ A + +I +E Sbjct: 485 KELMHILASTERLMEVIREELEMVRDAFGDV-----RRT---EITAASHDIDLEELIARE 536 Query: 519 PITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570 + V +S+ G+++ + + SA K+ D ++ L A+T D ILL ST G Sbjct: 537 DVVVTLSHEGYVKYQILSDYEAQRRGGKGKSATKMKDEDYIERLLVANTHDNILLFSTRG 596 Query: 571 KAYTLPAGNL-LSGR-GHGEAIQLLIDLNHNQDI-----VTAFVYD 609 K Y + L L+ R G+ I L+ L N+ I VT F D Sbjct: 597 KTYRMKVYQLPLASRTARGKPIVNLLPLEENERITAILPVTEFSAD 642 >gi|3220195|gb|AAC23563.1| DNA gyrase subunit A [Streptococcus pneumoniae] Length = 822 Score = 417 bits (1072), Expect = e-114, Method: Compositional matrix adjust. Identities = 256/713 (35%), Positives = 416/713 (58%), Gaps = 52/713 (7%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 ++N+ V+L ++ ++ YA+S I RA+PD+RDG KPVHRRI++ M+E+G+ K Sbjct: 3 DKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHK 62 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSARI G+V+GK HPHGD S+Y+++VR+AQ + RY L+ G GNFG++DGDSAAA RYTE Sbjct: 63 KSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYTE 122 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 ARM+++A +L+ ++++ VDF D Y+ + EP+V P++FPNLL NG +GIAVGMAT+IP Sbjct: 123 ARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIPP 182 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E +A ++DNPE++ + L+E + GPDFPTG +++ + I ++Y G+G +R Sbjct: 183 HNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVM-GKSGIHKAYETGKGSIVLR 241 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312 +R +E G IVVTE PY V K+++ E I L+ KRI + +RDES E VR V Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 + K R ++++ ++F ++ M+T F NM + G +P+++ L IL ++ H++EV+ Sbjct: 302 IEVK-RDASANVILNNLFKMTQMQTNFGFNMLAIQNG-IPKILSLRQILDAYIEHQKEVV 359 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVD 429 RR+ F + + R IL+GLLIA +IDE+I IIR + + + ++S+F L+E Q Sbjct: 360 VRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSKFKLSERQSQ 419 Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489 AIL++RLR L LE +I+SE D+LLA + +L ++ I E+ EVK FS Sbjct: 420 AILDMRLRRLTGLERDKIQSEYDDLLALIADLADILAKPERVSQIIKDELDEVKRKFSD- 478 Query: 490 TDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSL--------KSHSVDL 540 +RRT E+ +L+ + +IE+ + + +SNRG+I+ L K + Sbjct: 479 ----KRRT---ELMVGQVLSLEDEDLIEESDVLITLSNRGYIKRLDQDEFTAQKRGGRGV 531 Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLLSGRG 585 ++ D ++ + T D +L + G+ Y LP NLL Sbjct: 532 QGTGVEDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLK-LD 590 Query: 586 HGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK-GKTFLKV 644 E+IQ +I++ ++ A+++ +T +L+ + F AN R+ G L + Sbjct: 591 EDESIQTVINVESDRSD-DAYLFFTTRHVLLKRTSVKEF--------ANIRQNGLKALNL 641 Query: 645 SSEEKMKLVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSR-GKGVRLQSYKDG 695 E+++ V+ GD ++G + F+ + MSR GV+ + ++G Sbjct: 642 KDEDELINVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMSRIATGVKGVNLREG 694 >gi|169830227|ref|YP_001716209.1| DNA gyrase subunit A [Candidatus Desulforudis audaxviator MP104C] gi|169637071|gb|ACA58577.1| DNA gyrase, A subunit [Candidatus Desulforudis audaxviator MP104C] Length = 812 Score = 417 bits (1072), Expect = e-114, Method: Compositional matrix adjust. Identities = 260/691 (37%), Positives = 402/691 (58%), Gaps = 35/691 (5%) Query: 26 LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85 L+ YL YA+S I RA+PD+RDG KPVHRRI++AM +GL +KSA +VGEV+ K Sbjct: 17 LKHSYLDYAMSVIVGRALPDVRDGLKPVHRRILYAMHNLGLTADKPHRKSAYVVGEVLSK 76 Query: 86 LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145 LHPHGD +VYD+LVRLAQ F RYPL+ G GNFG+IDGD+AAA RYTE RM ++ +L Sbjct: 77 LHPHGDAAVYDALVRLAQDFACRYPLVDGHGNFGSIDGDAAAAMRYTEVRMARITSQMLA 136 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 +D++ VDF Y+ EPVV PS+ PNLL NG++GIAVGMAT+IP HN++E+ + + Sbjct: 137 DIDKETVDFIPNYDGTGEEPVVLPSRIPNLLVNGSAGIAVGMATNIPPHNLKEVIDGLVY 196 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265 L D+P+ +E L+ +I GPDFPTGG I+ R IVE+YR GRG ++R E VG + Sbjct: 197 LADHPDAELEDLMRFIPGPDFPTGGKIM-GRHGIVEAYRTGRGSIKMRGHAEFERVGSRT 255 Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325 IV+TE+PYQV K+RL+EKIA L+ K+I + D+RDES V+ R ++P++ Sbjct: 256 R-IVITELPYQVNKARLVEKIAALVREKKIEGISDLRDESDRKGMRVVIELRREVNPEIT 314 Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385 + ++ + ++ F + + L G+ PQV+ L IL +L H+REV+ RR + + Sbjct: 315 LNLLYKHTQLQDNFGVILLALVDGQ-PQVLALKDILSHYLGHQREVITRRCRYELSQAQA 373 Query: 386 RVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAILNLRLRSLRKL 442 R+ I++GL IA ++DE+I IR + + +++ F L+E Q AIL++RL+ L L Sbjct: 374 RLHIVEGLRIALAHLDEVIQTIRRSRDVAEARLGLMAGFGLSEKQAQAILDMRLQRLTAL 433 Query: 443 EEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEV 502 E ++++E ++L+A E++++LL ++ + E+ V++ F+ RRT E+ Sbjct: 434 ERDKLENEFNDLVAAIERLEALLADEQKILAVVKEELLAVRDKFADP-----RRT---EL 485 Query: 503 SRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIA 554 D + +I +E ++++N G+I RS + ++ + K D ++ Sbjct: 486 VAEDADFNPEDLIPQEDAVIILTNDGYIKRMPPSVYRSQRRGGRGIAGVETKVQDFVRHL 545 Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEAIQLLIDLNHNQDIVTAFV----Y 608 T D +L + GK Y + + +GR G A+ LI + N + VTA + Y Sbjct: 546 FVGKTHDYLLFFTERGKVYRVKVYEIPEAGRQARGTAVVNLIPVA-NGERVTAVIPVTEY 604 Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV-VKVT-GDHVAVVGE 666 L +V+ KG E + R G + ++ +E +LV VK+T G ++G Sbjct: 605 SGDAFLFMVTRKGIVKKTVLQEFDSARRDG--LIALTLDEGDELVDVKITDGKSEVLLGT 662 Query: 667 NRKLLI-FSIDQIPEMSR-GKGVRLQSYKDG 695 ++I F Q+ M R GVR S ++G Sbjct: 663 RNGMVIRFPEGQVRPMGRTAHGVRGISLREG 693 Score = 40.0 bits (92), Expect = 1.4, Method: Compositional matrix adjust. Identities = 42/163 (25%), Positives = 66/163 (40%), Gaps = 10/163 (6%) Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLN 597 L AL EGD L +LL + +G P G + + HG I L Sbjct: 635 LIALTLDEGDELVDVKITDGKSEVLLGTRNGMVIRFPEGQVRPMGRTAHGVR---GISLR 691 Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657 +V + D +LLVVS KG + E +R G + + +V ++ Sbjct: 692 EGDMVVGMDIVDPDDQLLVVSEKGYGKVTPVKEFRVQSRGGFGLIAARVSGRNGPLVSLS 751 Query: 658 ----GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDG 695 G+ + +V ++ L+ ID+IP+ R +GVRL G Sbjct: 752 LVGRGEEILIVSKSGILIRMKIDEIPQFGRQAQGVRLMRLAPG 794 >gi|320667814|gb|EFX34722.1| DNA gyrase subunit A [Escherichia coli O157:H7 str. LSU-61] Length = 875 Score = 417 bits (1072), Expect = e-114, Method: Compositional matrix adjust. Identities = 256/659 (38%), Positives = 381/659 (57%), Gaps = 65/659 (9%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + V++ L+ YL YA+S I RA+PD+RDG KPVHRR+++AM+ +G D+ A+KKSA Sbjct: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG+IDGDSAAA RYTE R+ Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 ++A ++ ++++ VDF D Y+ + P V P+K PNLL NG+SGIAVGMAT+IP HN+ Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ LA ID+ +ISIE L+E+I GPDFPT II R I E+YR GRG +RAR Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAII-NGRRGIEEAYRTGRGKVYIRARA 246 Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314 VE + G I+V EIPYQV K+RLIEKIAEL+ KR+ + +RDES +D +RIV+ Sbjct: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K ++ ++++ +++ + ++ F +NM L G+ P++M L I+ ++ HRREV+ R Sbjct: 307 VKRDAVG-EVVLNNLYSQTQLQVSFGINMVALHHGQ-PKIMNLKDIIASFVRHRREVVTR 364 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----------- 420 R+ F ++ R IL+ L +A NID II +IR+ P K +V+ Sbjct: 365 RTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAML 424 Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457 + LTE Q AIL+LRL+ L LE ++ E LL + Sbjct: 425 ERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQ 484 Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517 ++ +L S + I E+ V+E F G +R T + AD + +I + Sbjct: 485 IAELLRILGSADRLMEVIREELELVREQF------GDKRRTEITANSADINL--EDLITQ 536 Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569 E + V +S++G+++ + + SA KE D + L A+T D IL S+ Sbjct: 537 EDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSR 596 Query: 570 GKAYTLPAGNLLSG-RG-HGEAIQLLIDLNHNQDIVTAFV----YDSTCKLLVVSSKGN 622 G+ Y++ L RG G I L+ L ++ I TA + ++ K+ + ++ G Sbjct: 597 GRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERI-TAILPVTEFEEGVKVFMATANGT 654 >gi|149377385|ref|ZP_01895129.1| DNA gyrase, A subunit [Marinobacter algicola DG893] gi|149358309|gb|EDM46787.1| DNA gyrase, A subunit [Marinobacter algicola DG893] Length = 859 Score = 417 bits (1072), Expect = e-114, Method: Compositional matrix adjust. Identities = 247/605 (40%), Positives = 366/605 (60%), Gaps = 62/605 (10%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 V++ L++ YL YA+S I RA+PD+RDG KPVHRR++ AMSE+ D+ A+KKSAR+V Sbjct: 11 VNIEDELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELNNDWNKAYKKSARVV 70 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGD +VYD++VR+AQPF RYPL+ GQGNFG+IDGD+AAA RYTE RM ++ Sbjct: 71 GDVIGKYHPHGDSAVYDTIVRMAQPFSLRYPLVDGQGNFGSIDGDNAAAMRYTEIRMEKI 130 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A +L +D++ VDF Y+ + P V P++ PNLL NG+SGIAVGMAT+IP HN+ EI Sbjct: 131 AHSLLADLDKETVDFVANYDGTEQIPDVLPTRIPNLLVNGSSGIAVGMATNIPPHNLTEI 190 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 LALIDNP+++I+ L+E+I GPDFPT GII R IVE+YR GRG +RAR +E Sbjct: 191 VNGCLALIDNPDMTIDDLMEHIPGPDFPTQGII-NGRAGIVEAYRTGRGRIYIRARHEIE 249 Query: 260 EVGRGSW-CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFPKN 317 + + I++TE+PYQ+ K+RLIEKIAEL+ KR+ + ++RDES E +R+V+ + Sbjct: 250 HDKKTNRDAIIITELPYQLNKARLIEKIAELVKEKRLEGISELRDESNKEGIRVVIELR- 308 Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377 R +PD+++ ++F + ++T F +NM L G P+++ L +L ++ HRREV+ RR+ Sbjct: 309 RGENPDVVINNLFAHTQLQTVFGINMVALINGE-PKILNLKEMLDAFVRHRREVVTRRTI 367 Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIR----------------------------- 408 + ++ R IL+GL +A NIDEIIA+I+ Sbjct: 368 YELRKARERGHILEGLTVALANIDEIIALIKASPAAAEAKEKLMAQGWAPGDVLAMLERA 427 Query: 409 NEDKPKP--------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEK 460 ED +P + + L+ Q AIL+LRL L LE ++++E ++L EK Sbjct: 428 GEDACRPDDLPEIFGLRNGLYHLSPEQAQAILDLRLHRLTGLETEKLQNEYKDIL---EK 484 Query: 461 IDSLLN--SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518 I LL + Q+ IRE E+ + ++ G R T E++ + + +I++E Sbjct: 485 IADLLEILGDPDRLMQV---IRE--ELEAVVSEFGDNRLT--EITSSKRDLTIADLIDEE 537 Query: 519 PITVVISNRGWIRSLKSHSVDL--------SALHFKEGDSLKIALHAHTTDRILLLSTDG 570 + V IS+ G+ ++ +A K+ D ++ L A++ D IL S G Sbjct: 538 DLVVTISHGGYAKTQAVEDYQAQRRGGRGKAATSMKDEDFVEKLLVANSHDTILCFSNRG 597 Query: 571 KAYTL 575 K Y L Sbjct: 598 KVYWL 602 >gi|254704388|ref|ZP_05166216.1| DNA gyrase subunit A [Brucella suis bv. 3 str. 686] Length = 934 Score = 417 bits (1072), Expect = e-114, Method: Compositional matrix adjust. Identities = 253/694 (36%), Positives = 383/694 (55%), Gaps = 61/694 (8%) Query: 2 GVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61 G D+++ ++ +S+ ++ YL YA+S I RA+PD+RDG KPVHRRI+HAM Sbjct: 9 GSDDMNGGPNGGPSGIEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAM 68 Query: 62 SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121 +EM L + ++KSA +VGEV+GK HPHGD S+YD+LVR+AQ F R PLI GQGNFG+I Sbjct: 69 NEMNLAYNRPYRKSAGVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLIDGQGNFGSI 128 Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181 DGD AA RYTE R+ +V E +L +D+D V+F+D Y+ + EPVV P++FPNLL NG+ Sbjct: 129 DGDPPAAMRYTECRLEKVTESLLSDIDKDTVNFQDNYDGREQEPVVLPARFPNLLVNGSG 188 Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241 GIAVGMAT+IP HN+ E+ + +ALIDNP I + +L+E I GPDFPTGGII+ R I Sbjct: 189 GIAVGMATNIPPHNLGEVIDGCVALIDNPAIELSELMELIPGPDFPTGGIIL-GRNGINS 247 Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301 +Y GRG +R R +E + I++TEIPYQV K+ +IEK+AEL+ KRI + D+ Sbjct: 248 AYTTGRGSVIMRGRATIEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKRIDGISDL 307 Query: 302 RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361 RDES + V+ R D+++ ++ + ++T F NM L+ G+ Q+ LD +L Sbjct: 308 RDESDREGYRVVVELKRDAVADVVLNQLYRYTPLQTSFGCNMVALNGGKPEQLTLLD-ML 366 Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP----KPVM 417 + ++A R EV+ RR+ F + R +L GL IA NIDE+IA+IR P + +M Sbjct: 367 RAFVAFREEVVTRRTKFLLNKARDRAHVLVGLAIAVANIDEVIALIRRAPDPATAREQLM 426 Query: 418 VSR-------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELD 452 R ++L+E Q AIL+LRL+ L L ++ EL+ Sbjct: 427 ERRWPAVDVAPLIRLIDDPRHTLNEDNTYNLSEEQARAILDLRLQRLTALGRDEVADELN 486 Query: 453 NLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ 512 + E +L S + N + E+ V++ F+ RRT E+ + Sbjct: 487 KIGEEIRDYLDILGSRLRVMNIVKEEMIAVRDEFATP-----RRT---EIGFGGAEMDDE 538 Query: 513 AMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRIL 564 +I +E + V +S+ G+I R+ + S + KE D + A+T +L Sbjct: 539 DLIAREDMVVTVSHAGYIKRVPLTTYRAQRRGGKGRSGMATKEEDFVTRLFVANTHTPVL 598 Query: 565 LLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV------YDSTCK 613 S+ G K + LP G S G+A+ ++ L + I T + + Sbjct: 599 FFSSRGIVYKEKVWRLPVGTPQS---RGKALINMLPLQQGERITTIMPLPEDEDFWANLD 655 Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE 647 ++ +++G + S+ + R GK +K+ E Sbjct: 656 VMFSTTRGTVRRNKLSDFVQVNRNGKIAMKLEDE 689 >gi|257866281|ref|ZP_05645934.1| DNA gyrase subunit A [Enterococcus casseliflavus EC30] gi|257873203|ref|ZP_05652856.1| DNA gyrase subunit A [Enterococcus casseliflavus EC10] gi|257800239|gb|EEV29267.1| DNA gyrase subunit A [Enterococcus casseliflavus EC30] gi|257807367|gb|EEV36189.1| DNA gyrase subunit A [Enterococcus casseliflavus EC10] Length = 824 Score = 417 bits (1071), Expect = e-114, Method: Compositional matrix adjust. Identities = 225/560 (40%), Positives = 349/560 (62%), Gaps = 22/560 (3%) Query: 26 LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85 + E ++ YA+S I RA+PD+RDG KPVHRRI++ M+E+G+ KKSARIVG+V+GK Sbjct: 1 MRESFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHKKSARIVGDVMGK 60 Query: 86 LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145 HPHGD ++Y+S+VR+AQPF RY L+ G GNFG++DGD AAA RYTEARM+++A +L+ Sbjct: 61 YHPHGDSAIYESMVRMAQPFSYRYMLVDGHGNFGSVDGDGAAAMRYTEARMSKLAMEMLR 120 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 +++D VDF+ Y++ + EP V P++FPNLL NGT+GIAVGMAT+IP HN+ E+ A Sbjct: 121 DINKDTVDFQSNYDDTEREPAVLPARFPNLLVNGTTGIAVGMATNIPPHNLNEVIAAIDL 180 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265 L++NPE++ +L+E + GPDFPTGGI++ + I +Y G+G VR + V E+ G Sbjct: 181 LMENPEVTTSELMEVLPGPDFPTGGIVM-GKSGIRRAYETGKGSITVRGKVEVTEMPNGK 239 Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLFPKNRSLDPDL 324 I+VTE+PY V K++LIE+I+EL KRI + D+RDES+ E +RIV+ + R + + Sbjct: 240 ERILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMRIVIDVR-RDVSASV 298 Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384 ++ +++ ++ +++ F NM + G VP+++ L IL+ ++ H++EV+ RR+ F + Sbjct: 299 ILNNLYKMTALQSSFGFNMLAIEKG-VPKILSLKRILENYIEHQQEVVTRRTQFDKNKAE 357 Query: 385 RRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAILNLRLRSLRK 441 R IL+GL IA +IDEIIA+IR ++D+ K M+ RF L++ Q AIL++RLR L Sbjct: 358 ARAHILEGLRIALDHIDEIIALIRASNSDDEAKNSMMERFKLSDRQAQAILDMRLRRLTG 417 Query: 442 LEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCE 501 LE +I+SE LL + +L + ++ I E++E+ + F RRT Sbjct: 418 LERDKIESEYQGLLEFIADLTDILANPQRVLEIIQTELQELGQRFGDD-----RRTELLV 472 Query: 502 VSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKI 553 E+ IT ++N G+I R+ + + + + D +K Sbjct: 473 GEVLSLEDEDLIEEEEIVIT--LTNNGYIKRVAKSEFRAQRRGGRGVQGMGIHDEDFVKT 530 Query: 554 ALHAHTTDRILLLSTDGKAY 573 + T D +L + GK Y Sbjct: 531 LVSCSTHDTLLFFTNKGKVY 550 >gi|326624091|gb|EGE30436.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 878 Score = 417 bits (1071), Expect = e-114, Method: Compositional matrix adjust. Identities = 277/747 (37%), Positives = 411/747 (55%), Gaps = 69/747 (9%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + V++ L+ YL YA+S I RA+PD+RDG KPVHRR+++AM+ +G D+ A+KKSA Sbjct: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG+IDGDSAAA RYTE R+ Sbjct: 68 RVVGDVIGKYHPHGDFAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 ++A ++ ++++ VDF D Y+ + P V P+K PNLL NG+SGIAVGMAT+IP HN+ Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ LA IDN +ISIE L+E+I GPDFPT II R I E+YR GRG +RAR Sbjct: 188 TEVINGCLAYIDNEDISIEGLMEHIPGPDFPTAAII-NGRRGIEEAYRTGRGKVYIRARA 246 Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314 VE + G I+V EIPYQV K+RLIEKIAEL+ KR+ + +RDES +D +RIV+ Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKDGMRIVIE 306 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K ++ ++++ +++ + ++ F +NM L G+ P++M L I+ ++ HRREV+ R Sbjct: 307 VKRDAVG-EVVLNNLYSQTQLQVSFGINMVALHHGQ-PKIMNLKDIISAFVRHRREVVTR 364 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----------- 420 R+ F ++ R IL+ L IA NID II +IR P K ++SR Sbjct: 365 RTIFELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAALISRPWDLGNVAAML 424 Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457 + LTE Q AIL+LRL+ L LE ++ E LL + Sbjct: 425 ERAGDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQ 484 Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517 ++ +L S + I E+ +++ F G R T + AD + +I + Sbjct: 485 IAELLHILGSADRLMEVIREEMELIRDQF------GDERRTEITANSADINI--EDLISQ 536 Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569 E + V +S++G+++ + + SA KE D + L A+T D IL S+ Sbjct: 537 EDVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSR 596 Query: 570 GKAYTLPAGNLL-SGRG-HGEAIQLLIDLNHNQDIVTAFV----YDSTCKLLVVSSKGNA 623 G+ Y + L + RG G I L+ L N+ I TA + Y+ + + ++ G Sbjct: 597 GRLYWMKVYQLPEASRGARGRPIVNLLPLEANERI-TAILPVREYEEGVNVFMATASGTV 655 Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMS 682 +E G + ++ +++ V +G D V + K++ F D + M Sbjct: 656 KKTALTEFSRPRSAGIIAVNLNDGDELIGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAMG 715 Query: 683 R-GKGVRLQSYKDGGISDVICFKICEG 708 R GVR K G V+ I G Sbjct: 716 RTATGVR--GIKLAGDDKVVSLIIPRG 740 >gi|323161692|gb|EFZ47575.1| DNA gyrase, A subunit [Escherichia coli E128010] Length = 875 Score = 417 bits (1071), Expect = e-114, Method: Compositional matrix adjust. Identities = 256/659 (38%), Positives = 381/659 (57%), Gaps = 65/659 (9%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + V++ L+ YL YA+S I RA+PD+RDG KPVHRR+++AM+ +G D+ A+KKSA Sbjct: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG+IDGDSAAA RYTE R+ Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 ++A ++ ++++ VDF D Y+ + P V P+K PNLL NG+SGIAVGMAT+IP HN+ Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ LA ID+ +ISIE L+E+I GPDFPT II R I E+YR GRG +RAR Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAII-NGRRGIEEAYRTGRGKVYIRARA 246 Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314 VE + G I+V EIPYQV K+RLIEKIAEL+ KR+ + +RDES +D +RIV+ Sbjct: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K ++ ++++ +++ + ++ F +NM L G+ P++M L I+ ++ HRREV+ R Sbjct: 307 VKRDAVG-EVVLNNLYSQTQLQVSFGINMVALHHGQ-PKIMNLKDIIAAFVRHRREVVTR 364 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----------- 420 R+ F ++ R IL+ L +A NID II +IR+ P K +V+ Sbjct: 365 RTIFELRKARDRAHILEALAVALANIDSIIELIRHAPTPAEAKTALVANPWQLGNVAAML 424 Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457 + LTE Q AIL+LRL+ L LE ++ E LL + Sbjct: 425 ERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQ 484 Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517 ++ +L S + I E+ V+E F G +R T + AD + +I + Sbjct: 485 IAELLRILGSADRLMEVIREELELVREQF------GDKRRTEITANSADINL--EDLITQ 536 Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569 E + V +S++G+++ + + SA KE D + L A+T D IL S+ Sbjct: 537 EDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSR 596 Query: 570 GKAYTLPAGNLLSG-RG-HGEAIQLLIDLNHNQDIVTAFV----YDSTCKLLVVSSKGN 622 G+ Y++ L RG G I L+ L ++ I TA + ++ K+ + ++ G Sbjct: 597 GRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERI-TAILPVTEFEEGVKVFMATANGT 654 >gi|146295091|ref|YP_001178862.1| DNA gyrase, A subunit [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145408667|gb|ABP65671.1| DNA gyrase subunit A [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 809 Score = 417 bits (1071), Expect = e-114, Method: Compositional matrix adjust. Identities = 254/695 (36%), Positives = 411/695 (59%), Gaps = 30/695 (4%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 V ++ ++ Y+ YA+S I RA+PD+RDG KPVHRRI++AM+E+GL ++KSA +V Sbjct: 11 VEIQEEMKRSYIDYAMSVIVSRALPDVRDGLKPVHRRILYAMNEIGLTPDKPYRKSATVV 70 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G V+ K HPHGD +VY+SLVR+AQ F R+PL+ G GNFG++DGD AA RYTEARM+++ Sbjct: 71 GHVLAKYHPHGDAAVYESLVRMAQDFSMRHPLVDGHGNFGSVDGDPPAAMRYTEARMSKI 130 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A +L+ ++++ VDF ++E EP V PS+FPNLL NG+ GIAVGMAT+IP HN+ E+ Sbjct: 131 AIEMLRDIEKETVDFMPNFDESAKEPKVLPSRFPNLLVNGSQGIAVGMATNIPPHNLAEV 190 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 +A + L+DN ++ +++ I GPDFPTGG I+ ++ I ++Y G+G VRA+ +E Sbjct: 191 IDAIVYLLDNENAGLDDIMKIIKGPDFPTGGYII-GKKGIRDAYATGKGKIIVRAKATIE 249 Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFPKNR 318 + +G IVVTE+PY V K+RLIEKIAEL+ KRI + DIRDES E +RIV+ K + Sbjct: 250 QTSKGRQRIVVTELPYMVNKARLIEKIAELVHEKRIDGISDIRDESDKEGLRIVIEIK-K 308 Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378 D +++++ ++ + ++ F + M L + P+V+ L +L ++ H+++V+ RR+ + Sbjct: 309 DADANVVLKQLYKNTQLQDSFGIIMLAL-VDNQPKVLTLLDMLNYYIEHQKDVIVRRTKY 367 Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAILNLR 435 ++ + R IL+GL A +IDEII+IIR+ ++ K ++ RF TE Q AIL++R Sbjct: 368 DLKKAEERAHILEGLKKALDHIDEIISIIRSSRTVNEAKERLIKRFGFTEVQAQAILDMR 427 Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495 L+ L LE +I+ EL LL E ++L + I EI E+KE + R Sbjct: 428 LQRLTGLERQKIEEELAELLKMIEYYKNVLANEAMVKEIIKKEILEIKEKYKDE-----R 482 Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSVDLSALHFKE 547 RT + + ++ +I+++ + +++ G+I+ L K ++ + +E Sbjct: 483 RTKI--IQDEQEDFEEEELIQEQDTVITLTHFGYIKRLPLDTYKSQKRGGKGITGISTRE 540 Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTA 605 D ++ T IL + GKAY L A + S + G AI LI + ++ I Sbjct: 541 EDFVEEVFVTTTHHYILFFTDKGKAYRLRAYEVPEASRQAKGTAIVNLIQIGKDEKITAC 600 Query: 606 F-VYDSTCKLLVVSSK-GNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT--GDHV 661 V D L++ +K G V SE T+ GK + ++ ++ + + VK+T D + Sbjct: 601 MTVKDFKEGFLMMCTKNGTIKKVLLSEFENTTKAGKKAITLAEDDCL-IDVKLTSGNDEM 659 Query: 662 AVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDG 695 +V ++F+ + + M R +GV+ + +DG Sbjct: 660 VLVSSGGYCVVFNENDVRVMGRSAQGVKGMTLEDG 694 >gi|3550980|dbj|BAA32701.1| DNA gyrase A subunit [Streptococcus pneumoniae] Length = 822 Score = 417 bits (1071), Expect = e-114, Method: Compositional matrix adjust. Identities = 256/706 (36%), Positives = 413/706 (58%), Gaps = 38/706 (5%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 ++N+ V+L ++ ++ YA+S I RA+PD+RDG KPVHRRI++ M+E+G+ K Sbjct: 3 DKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHK 62 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSARI G+V+GK HPHGD S+Y+++VR+AQ + RY L+ G GNFG++DGDSAAA RYTE Sbjct: 63 KSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYTE 122 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 ARM+++A +L+ ++++ VDF D Y+ + EP+V P++FPNLL NG +GIAVGMAT+IP Sbjct: 123 ARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIPP 182 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E +A ++DNPE++ + L+E + GPDFPTG +++ + I ++Y G+G +R Sbjct: 183 HNLGETFDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVM-GKSGIHKAYETGKGSIVLR 241 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312 +R +E G IVVTE PY V K+++ E I L+ KRI + +RDES E VR V Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 + K R ++++ ++F ++ M+T F NM + G +P+++ L IL ++ H++EV+ Sbjct: 302 IEVK-RDASANVILNNLFKMTQMQTNFGFNMLAIQNG-IPKILSLRQILDAYIEHQKEVV 359 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVD 429 RR+ F + + R IL+GLLIA +IDE+I IIR + + + ++S+F L+E Q Sbjct: 360 VRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSKFKLSERQSQ 419 Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489 AIL++RLR L LE +I+SE D+LLA + +L ++ I E+ EVK FS Sbjct: 420 AILDMRLRRLTGLERDKIQSEYDDLLALIADLADILAKPERVSQIIKDELDEVKRKFSD- 478 Query: 490 TDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSLKSHSVD--------L 540 +RRT E+ +L+ + +IE+ + + +SNRG+I+ L + Sbjct: 479 ----KRRT---ELMIGQVLSLEDEDLIEESDVLITLSNRGYIKRLDQDEFTAQKRGGRCV 531 Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS-GR-GHGEAIQLLIDLNH 598 K+ D ++ + T D +L + G+ Y L + GR G + L+ L+ Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDE 591 Query: 599 NQDIVTAFVYDS----TCKLLVVSSKGNAFIVEESEI--IANTRK-GKTFLKVSSEEKMK 651 ++ I T +S L + G IV+ + + AN R+ G L + E+++ Sbjct: 592 DESIQTVINVESDRSDDAYLFFTTRHG---IVKRTSVKEFANIRQNGLKALNLKDEDELI 648 Query: 652 LVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSR-GKGVRLQSYKDG 695 V+ GD ++G + F+ + MSR GV+ + ++G Sbjct: 649 NVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMSRIATGVKGVNLREG 694 >gi|300717615|ref|YP_003742418.1| DNA gyrase subunit A [Erwinia billingiae Eb661] gi|299063451|emb|CAX60571.1| DNA gyrase subunit A [Erwinia billingiae Eb661] Length = 887 Score = 417 bits (1071), Expect = e-114, Method: Compositional matrix adjust. Identities = 251/636 (39%), Positives = 373/636 (58%), Gaps = 60/636 (9%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + V++ L+ YL YA+S I RA+PD+RDG KPVHRR+++AM+ +G D+ +KKSA Sbjct: 8 ITPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKPYKKSA 67 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG++DGDSAAA RYTE RM Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEVRM 127 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 +++A +L ++++ VDF Y+ + P V P++ PNLL NG SGIAVGMAT+IP HN+ Sbjct: 128 SKIAHELLADLEKETVDFVPNYDGTEQIPAVMPTRVPNLLINGASGIAVGMATNIPPHNL 187 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ LA ID+ I++E L+E+I GPDFPT II R I E+YR GRG +RAR Sbjct: 188 TEVISGCLAYIDDENITVEGLMEHIPGPDFPTAAII-NGRRGIEEAYRTGRGKIYIRARG 246 Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314 VE + G I++ EIPYQV K+RLIEKIAEL+ KR+ + +RDES +D +RIV+ Sbjct: 247 EVETDAKTGRETIIIHEIPYQVNKARLIEKIAELVKEKRLEGISALRDESDKDGMRIVVE 306 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K ++ ++++ +++ L+ ++T F +NM L G+ P++MPL IL+ ++ HRREV+ R Sbjct: 307 VKRDAVG-EVVLNNLYSLTQLQTSFGINMVALHQGQ-PKIMPLKDILEAFVRHRREVVTR 364 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----------- 420 R+ F ++ R IL+ L IA N+D II +IR+ P K +V+R Sbjct: 365 RTIFELRKARDRAHILEALAIALANLDPIIELIRHAANPAEAKAGLVARPWALGNVAAML 424 Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457 + LTE Q AIL+LRL+ L LE ++ E LL + Sbjct: 425 ERAGDNAARPEWLEDEFGIRDGEYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQ 484 Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517 ++ +L S ++ I E+ +++ F G +R T + AD + +I + Sbjct: 485 IAELIRILESSERLMEVIREELELIRDQF------GDKRRTEITANTADINI--EDLINQ 536 Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569 E + V +S++G+++ + + SA KE D + L A+T D IL S+ Sbjct: 537 EDVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSR 596 Query: 570 GKAYTLPAGNLL-SGRG-HGEAIQLLIDLNHNQDIV 603 G+ Y + L + RG G I L+ L N+ I Sbjct: 597 GRLYWMKVYQLPEASRGARGRPIVNLLPLEANERIT 632 >gi|218548315|ref|YP_002382106.1| DNA gyrase subunit A [Escherichia fergusonii ATCC 35469] gi|218355856|emb|CAQ88469.1| DNA gyrase (type II topoisomerase), subunit A [Escherichia fergusonii ATCC 35469] Length = 878 Score = 417 bits (1071), Expect = e-114, Method: Compositional matrix adjust. Identities = 256/659 (38%), Positives = 381/659 (57%), Gaps = 65/659 (9%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + V++ L+ YL YA+S I RA+PD+RDG KPVHRR+++AM+ +G D+ A+KKSA Sbjct: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG+IDGDSAAA RYTE R+ Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 ++A ++ ++++ VDF D Y+ + P V P+K PNLL NG+SGIAVGMAT+IP HN+ Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ LA ID+ +ISIE L+E+I GPDFPT II R I E+YR GRG +RAR Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAII-NGRRGIEEAYRTGRGKVYIRARA 246 Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314 VE + G I+V EIPYQV K+RLIEKIAEL+ KR+ + +RDES +D +RIV+ Sbjct: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K ++ ++++ +++ + ++ F +NM L G+ P++M L I+ ++ HRREV+ R Sbjct: 307 VKRDAVG-EVVLNNLYSQTQLQVSFGINMVALHHGQ-PKIMNLKDIIAAFVRHRREVVTR 364 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----------- 420 R+ F ++ R IL+ L +A NID II +IR+ P K +V+ Sbjct: 365 RTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAML 424 Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457 + LTE Q AIL+LRL+ L LE ++ E LL + Sbjct: 425 ERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQ 484 Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517 ++ +L S + I E+ V+E F G +R T + AD + +I + Sbjct: 485 IAELLRILGSADRLMEVIREELELVREQF------GDKRRTEITANSADINL--EDLITQ 536 Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569 E + V +S++G+++ + + SA KE D + L A+T D IL S+ Sbjct: 537 EDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSR 596 Query: 570 GKAYTLPAGNLLSG-RG-HGEAIQLLIDLNHNQDIVTAFV----YDSTCKLLVVSSKGN 622 G+ Y++ L RG G I L+ L ++ I TA + ++ K+ + ++ G Sbjct: 597 GRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERI-TAILPVTEFEEGVKVFMATANGT 654 >gi|219851687|ref|YP_002466119.1| DNA gyrase, A subunit [Methanosphaerula palustris E1-9c] gi|219545946|gb|ACL16396.1| DNA gyrase, A subunit [Methanosphaerula palustris E1-9c] Length = 838 Score = 417 bits (1071), Expect = e-114, Method: Compositional matrix adjust. Identities = 236/604 (39%), Positives = 362/604 (59%), Gaps = 25/604 (4%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 V V++ ++ Y+ YA+S I RAIPD+RDG KPVHRR ++AM E G A+KKSA Sbjct: 14 VIPVNIEDEMKSSYIDYAMSVIIGRAIPDIRDGLKPVHRRTLYAMWEEGNTSDKAYKKSA 73 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R V +GK HPHGD S+YD+LV++AQPF R PL+ GQGNFG+IDGDSAAA RYTEAR+ Sbjct: 74 RAVAGTMGKYHPHGDASIYDTLVKMAQPFSYRIPLVDGQGNFGSIDGDSAAAMRYTEARL 133 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 T+ AE +L +D+ VDF ++ EP V PSK PNLL NGTSGIAVGMAT++P HN+ Sbjct: 134 TRYAEELLADLDKKTVDFTPNFDSSTEEPTVLPSKVPNLLVNGTSGIAVGMATNMPPHNL 193 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 +E+C A I NP+ ++E L++ + GPDFPTGG+I + E IV +Y G G VR Sbjct: 194 REVCSAVEMTIKNPDCTVEDLMQVMPGPDFPTGGLITGT-EGIVSAYHTGYGKLTVRGVA 252 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316 +E+V + I+++EIPYQV K+R++E IA L+ K+I + D+RDES D V+ Sbjct: 253 EIEDVETKTPKIIISEIPYQVNKARMVELIATLVKEKKIEGISDLRDESDRDGLRVVVDL 312 Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376 + + P +++ ++ + +E+ F + +N+ P+V+ L I+ E+L HR V+ RR Sbjct: 313 KKGVIPTVVLNQLYKHTPLESTFGI-INLAISDNQPKVLGLKAIISEFLHHRATVVRRRC 371 Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAILN 433 F ++ R+ IL GLL+A IDE+IA IR + + + +++ F LTE Q AIL Sbjct: 372 EFDLKKAKDRLHILLGLLVALDRIDEVIATIRQSASSEAAQKALIATFGLTEPQTVAILQ 431 Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493 ++LR L LE+ +I+ E D+L +++ +L+ + +I EI +V E + Sbjct: 432 MQLRRLAALEQAKIRDERDSLAHVIAELERILSCEANIYEEIRKEIVDVGERYGDD---- 487 Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS--------ALHF 545 RRT E++ + ++ +IE +P+ + I+ + +I+ L + + + Sbjct: 488 -RRT---EITCSQTILEREDLIEDKPVLISITTQNYIKRLPLETYRMQRRGGRGVIGMAT 543 Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIV 603 K+ DS++ A D +L +TDG+ Y L N+ S G+AI L++L +++ Sbjct: 544 KDEDSVEDIFVASMHDYLLCFTTDGRVYWLKVYNIPEASRTSKGKAIVNLLEL--QDELI 601 Query: 604 TAFV 607 TA + Sbjct: 602 TAVI 605 >gi|289663149|ref|ZP_06484730.1| DNA gyrase subunit A [Xanthomonas campestris pv. vasculorum NCPPB702] gi|289669584|ref|ZP_06490659.1| DNA gyrase subunit A [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 899 Score = 417 bits (1071), Expect = e-114, Method: Compositional matrix adjust. Identities = 263/725 (36%), Positives = 384/725 (52%), Gaps = 65/725 (8%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 V+L + + YL YA+S I RA+PD RDG KPVHRR++ AM E+G A+ KSARIV Sbjct: 11 VNLEDEMRKSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHELGAHSNKAYFKSARIV 70 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGDQSVYD+LVR+AQPF RY ++ GQGNFG++DGDSAAA RYTE+RM+++ Sbjct: 71 GDVIGKYHPHGDQSVYDTLVRMAQPFSLRYMMVDGQGNFGSVDGDSAAAMRYTESRMSRL 130 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A ++ ++++ VDF+ Y+E++ EP V P++FPNLL NG++GIAVGMAT+IP HN+ E Sbjct: 131 AHELMADIEKETVDFQPNYDEKEQEPTVMPTRFPNLLVNGSAGIAVGMATNIPPHNLTEA 190 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 A +ALID PE+ +E L+EYI GPDFPT GII I YR GRG R+RA+ VE Sbjct: 191 INACIALIDTPELDVEGLMEYIPGPDFPTAGII-NGTAGIAAGYRTGRGRVRIRAKAEVE 249 Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319 G +VVTEIPYQV K+RLIEKIAEL+ K++ + ++RDES +D + R Sbjct: 250 VADNGREAVVVTEIPYQVNKARLIEKIAELVKEKKLEGISELRDESDKDGMRIYIEVKRG 309 Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379 ++++ +++ + ME F +NM L GR PQ+M L +L+ ++ HRREV+ RR+ F Sbjct: 310 ESAEVVLNNLYQQTQMEAVFGINMVALIDGR-PQLMNLKQMLEAFIRHRREVVTRRTIFE 368 Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSR---------------- 420 ++ R +L+GL +A NIDE+I +I+ P+ M+++ Sbjct: 369 LRKARARAHVLEGLTVALANIDEMIELIKTSANPQEARERMLAKTWQPGLVGALLGAAGA 428 Query: 421 ------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKID 462 + L+E Q IL +RL L LE+ ++ E LL E + Sbjct: 429 EASKPEDLPPGVGLIKGFYQLSEVQASQILEMRLHRLTGLEQEKLTDEYKQLLGVIEGLI 488 Query: 463 SLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITV 522 +L + I E+ ++E + G R T S D L +I E + V Sbjct: 489 RILENPDVLLQVIRDELINIREEY------GDERRTEIRHSEEDLDILD--LIAPEDVVV 540 Query: 523 VISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT 574 +S+ G+ + + + SA KE D + +T D +L ++ GK + Sbjct: 541 TLSHAGYAKRQPVSAYRAQRRGGRGRSAAATKEEDFIDQLWLVNTHDTLLTFTSSGKVFW 600 Query: 575 LPAGNL--LSGRGHGEAIQLLIDLNHN---QDIVTAFVYDSTCKLLVVSSKGNAFIVEES 629 LP L G I I L Q ++ Y + + G S Sbjct: 601 LPVHQLPEAGSNARGRPIINWIPLEPGERVQAVLPVREYADNRYVFFATRNGTVKKTPLS 660 Query: 630 EIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSRG---- 684 E +GK + + + + V GD V + N K + F + M R Sbjct: 661 EFAFRLARGKIAINLDEGDALVGVALTDGDRDVLLFASNGKTVRFGESTVRSMGRTATGV 720 Query: 685 KGVRL 689 +G+RL Sbjct: 721 RGIRL 725 >gi|28209862|ref|NP_780806.1| DNA gyrase subunit A [Clostridium tetani E88] gi|28202297|gb|AAO34743.1| DNA gyrase subunit A [Clostridium tetani E88] Length = 813 Score = 417 bits (1071), Expect = e-114, Method: Compositional matrix adjust. Identities = 281/772 (36%), Positives = 445/772 (57%), Gaps = 43/772 (5%) Query: 5 NISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEM 64 N N+N E V V ++ +++ Y+ YA+S I RA+PD+RDG KPVHRRI+++M E+ Sbjct: 2 NYMNNN---EGKVLEVDIKQEMKKCYIDYAMSVIVGRALPDVRDGLKPVHRRILYSMYEL 58 Query: 65 GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124 GL +++K ARIVG+V+GK HPHGD SVYD+LVR+AQ F RY L+ G GNFG++DGD Sbjct: 59 GLSPEKSYRKCARIVGDVLGKYHPHGDSSVYDALVRMAQDFSIRYTLVDGHGNFGSVDGD 118 Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184 SAAA RYTEA+M ++ +L+ ++++ VDF ++ + EP V PS+FPNLL NG+SGIA Sbjct: 119 SAAAMRYTEAKMGKITIEMLRDINKNTVDFTPNFDGSEKEPSVIPSRFPNLLVNGSSGIA 178 Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244 VGMAT+IP HN+ E+ + LI++P+ +I +L+ I GPDFPT GII+ + I +Y Sbjct: 179 VGMATNIPPHNLCEVIDGINMLIEDPDTTILELMSKIKGPDFPTAGIIM-GKSGIRSAYE 237 Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304 GRG +RA+ +EE +G + I+VTE+PYQV K++LIE +AEL+ KRI + DIRDE Sbjct: 238 TGRGKVIMRAKAEIEE-EKGRYRIIVTELPYQVNKAKLIENMAELVKDKRIDGISDIRDE 296 Query: 305 S-AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363 S E +RIV+ K R +P++++ ++ + M+ F + M L + P+V+ L IL Sbjct: 297 SDREGMRIVVEIK-RDSNPNVVLNQLYKHTKMQDTFGVIMIAL-VDNEPKVLNLKEILVN 354 Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSR 420 ++ ++E++ RR+ F + R IL+GL IA +IDE+I++IR N D+ + ++++ Sbjct: 355 YIEFQKEIIRRRTKFDLDKALARAHILEGLRIALDHIDEVISLIRSSKNADEARNGLMTK 414 Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480 FSLTE Q AIL++RL+ L LE +I+ E + L+ + + +LN+ I E+ Sbjct: 415 FSLTEKQAQAILDMRLQRLTGLERDKIEEEYNQLMETIKYLRDILNNEDLVLKIIKEELH 474 Query: 481 EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD- 539 E+K + G R T E++ + + + +IE+E + V ++N G+I+ + S + Sbjct: 475 EIKNKY------GDERKTEIELNINEISI--EDLIEEEEVVVTLTNSGYIKRISSDAYSS 526 Query: 540 -------LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL-LSGR-GHGEAI 590 + A+ KE D ++ T +L + GK Y L A + +GR G I Sbjct: 527 QKRGGKGIQAMTTKEDDFVERVFITSTHSDLLFFTNIGKVYKLKAYEIPEAGRTAKGTNI 586 Query: 591 QLLIDLNHNQDI--VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK-GKTFLKVSSE 647 L+ ++ N+ + V A D L++ +K N RK G + + E Sbjct: 587 VNLLPVDANEHVREVIALKKDLEEGYLIIGTKQGLIKKTSLNQFKNIRKNGIIAINLKDE 646 Query: 648 EKMKLVVKVT-GD-HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYK--DGGISDVIC 702 +++ L VKVT GD + +V +N + FS + M R GV+ S + D +S I Sbjct: 647 DEL-LKVKVTRGDAEIIIVTQNGYAIRFSEKDVRPMGRNSTGVKAISLRKDDVAVSMDIV 705 Query: 703 FKICEGLTWIDSA-GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753 + LT ++ G+ SE L R G G + + ++GK +S+ Sbjct: 706 VEDEYVLTVTENGFGKRTLASEY----TLQNRNGKGLITHRVTDKTGKIVSA 753 >gi|254693811|ref|ZP_05155639.1| DNA gyrase subunit A [Brucella abortus bv. 3 str. Tulya] gi|261214092|ref|ZP_05928373.1| DNA gyrase subunit A [Brucella abortus bv. 3 str. Tulya] gi|260915699|gb|EEX82560.1| DNA gyrase subunit A [Brucella abortus bv. 3 str. Tulya] Length = 922 Score = 417 bits (1071), Expect = e-114, Method: Compositional matrix adjust. Identities = 255/679 (37%), Positives = 379/679 (55%), Gaps = 61/679 (8%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 ++ +S+ ++ YL YA+S I RA+PD+RDG KPVHRRI+HAM+EM L + ++KSA Sbjct: 12 IEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAMNEMNLAYNRPYRKSA 71 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 +VGEV+GK HPHGD S+YD+LVR+AQ F R PLI GQGNFG+IDGD AA RYTE R+ Sbjct: 72 GVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLIDGQGNFGSIDGDPPAAMRYTECRL 131 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 +V E +L +D+D V+F+D Y+ + EPVV P++FPNLL NG+ GIAVGMAT+IP HN+ Sbjct: 132 EKVTESLLSDIDKDTVNFQDNYDGREQEPVVLPARFPNLLVNGSGGIAVGMATNIPPHNL 191 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ + +ALIDNP I + +L+E I GPDFPTGGII+ R I +Y GRG +R R Sbjct: 192 GEVIDGCVALIDNPAIDLSELMELIPGPDFPTGGIIL-GRNGINSAYTTGRGSVIMRGRA 250 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316 +E + I++TEIPYQV K+ +IEK+AEL+ KRI + D+RDES + V+ Sbjct: 251 TIEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKRIDGISDLRDESDREGYRVVVEL 310 Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376 R D+++ ++ + ++T F NM L+ G+ Q+ LD +L+ ++A R EV+ RR+ Sbjct: 311 KRDAVADVVLNQLYRYTPLQTSFGCNMVALNGGKPEQLTLLD-MLRAFVAFREEVVTRRT 369 Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP----KPVMVSR------------ 420 F + R +L GL IA NIDE+IA+IR P + +M R Sbjct: 370 KFLLNKARDRAHVLVGLAIAVANIDEVIALIRRAPDPATAREQLMERRWPAVDVAPLIRL 429 Query: 421 -------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467 ++L+E Q AIL+LRL+ L L ++ EL+ + E +L S Sbjct: 430 IDDPRHTLNEDNTYNLSEEQARAILDLRLQRLTALGRDEVADELNKIGEEIRDYLDILGS 489 Query: 468 GKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNR 527 + N + E+ V++ F+ RRT E+ + +I +E + V +S+ Sbjct: 490 RLRVMNIVKEEMIAVRDEFATP-----RRT---EIGFGGAEMDDEDLIAREDMVVTVSHA 541 Query: 528 GWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYT 574 G+I R+ + S + KE D + A+T +L S+ G K + Sbjct: 542 GYIKRVPLTTYRAQRRGGKGRSGMATKEEDFVTRLFVANTHTPVLFFSSRGIVYKEKVWR 601 Query: 575 LPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY----DSTCKLLVV--SSKGNAFIVEE 628 LP G S G+A+ ++ L + I T DS L V+ +++G + Sbjct: 602 LPVGTPQS---RGKALINMLPLQQGERITTIMPLPEDEDSWANLDVMFSTTRGTVRRNKL 658 Query: 629 SEIIANTRKGKTFLKVSSE 647 S+ + R GK +K+ E Sbjct: 659 SDFVQVNRNGKIAMKLEDE 677 >gi|9230557|gb|AAF85899.1| DNA gyrase A subunit [Streptococcus pneumoniae] Length = 822 Score = 417 bits (1071), Expect = e-114, Method: Compositional matrix adjust. Identities = 256/706 (36%), Positives = 415/706 (58%), Gaps = 38/706 (5%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 ++N+ V+L ++ ++ YA+S I RA+PD+RDG KPVHRRI++ M+E+G+ K Sbjct: 3 DKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHK 62 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSARI G+V+GK HPHGD S+Y+++VR+AQ + RY L+ G GNFG++DGD AAA RYTE Sbjct: 63 KSARITGDVMGKYHPHGDFSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYTE 122 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 ARM+++A +L+ ++++ VDF D Y+ + EP+V P++FPNLL NG +GIAVGMAT+IP Sbjct: 123 ARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIPP 182 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E +A ++DNPE++ + L+E + GPDFPTG +++ + I ++Y G+G +R Sbjct: 183 HNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVM-GKSGIHKAYETGKGSIVLR 241 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312 +R +EE G IVVTE PY V K+++ E I L+ KRI + +RDES E VR V Sbjct: 242 SRTEIEETKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 + K R ++++ ++F ++ M+T F NM + G +P+++ L IL ++ H++EV+ Sbjct: 302 IEVK-RDASANVILNNLFKMTQMQTNFGFNMLAIQNG-IPKILSLRQILDAYIEHQKEVV 359 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVD 429 RR+ F + + R IL+GLLIA +IDE+I IIR + + + ++S+F L+E Q Sbjct: 360 VRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSKFKLSERQSQ 419 Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489 AIL++RLR L LE +I+SE D+LLA + +L ++ I E+ EVK FS Sbjct: 420 AILDMRLRRLTGLERDKIQSEYDDLLALIADLADILAKPERVSQIIKDELDEVKRKFSD- 478 Query: 490 TDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSL--------KSHSVDL 540 +RRT E+ +L+ + +IE+ + + +SN+G+I+ L K + Sbjct: 479 ----KRRT---ELMVGQVLSLEDEDLIEESDVLITLSNKGYIKRLDQAEFTAQKRGGRGV 531 Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS-GR-GHGEAIQLLIDLNH 598 K+ D ++ + T D +L + G+ Y L + GR G + L+ L+ Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDE 591 Query: 599 NQDIVTAFVYDS----TCKLLVVSSKGNAFIVEESEI--IANTRK-GKTFLKVSSEEKMK 651 +++I T +S L + G IV+ + + AN R+ G L + E+++ Sbjct: 592 DENIQTVINVESDRSDDAYLFFTTRHG---IVKRTSVKEFANIRQNGLKALNLKDEDELI 648 Query: 652 LVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSR-GKGVRLQSYKDG 695 V+ GD ++G + F+ + MSR GV+ + ++G Sbjct: 649 NVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMSRIATGVKGVNLREG 694 >gi|73916184|gb|AAZ92960.1| DNA gyrase subunit A [Streptococcus pneumoniae] Length = 822 Score = 417 bits (1071), Expect = e-114, Method: Compositional matrix adjust. Identities = 257/706 (36%), Positives = 413/706 (58%), Gaps = 38/706 (5%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 ++N+ V+L ++ ++ YA+S I RA+PD+RDG KPVHRRI++ M+E+G+ K Sbjct: 3 DKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHK 62 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSARI G+V+GK HPHGD S+Y ++VR+AQ + RY L+ G GNFG++DGDSAAA RYTE Sbjct: 63 KSARITGDVMGKYHPHGDSSIYKAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYTE 122 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 ARM+++A +L+ ++++ VDF D Y+ + EP+V P++FPNLL NG +GIAVGMAT+IP Sbjct: 123 ARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIPP 182 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E +A ++DNPE++ + L+E + GPDFPTG +++ + I ++Y G+G +R Sbjct: 183 HNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVM-GKSGIHKAYETGKGSIVLR 241 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312 +R +E G IVVTE PY V K+++ E I L+ KRI + +RDES E VR V Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 + K R ++++ ++F ++ M+T F NM + G +P+++ L IL ++ H++EV+ Sbjct: 302 IEVK-RDASANVILNNLFKMTQMQTNFGFNMLAIQNG-IPKILSLRQILDAYIEHQKEVV 359 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVD 429 RR+ F + + R IL+GLLIA +IDE+I IIR + + + ++S+F L+E Q Sbjct: 360 VRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSKFKLSERQSQ 419 Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489 AIL++RLR L LE +I+SE D+LLA + +L ++ I E+ EVK FS Sbjct: 420 AILDMRLRRLTGLERDKIQSEYDDLLALIADLADILAKPERVSQIIKDELDEVKRKFSD- 478 Query: 490 TDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSL--------KSHSVDL 540 +RRT E+ +L+ + +IE+ + + +SNRG+I+ L K + Sbjct: 479 ----KRRT---ELMVGQILSLEDEDLIEESDVLITLSNRGYIKRLDQDEFTAQKRGGRGV 531 Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS-GR-GHGEAIQLLIDLNH 598 K+ D ++ + T D +L + G+ Y L + GR G + L+ L+ Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDE 591 Query: 599 NQDIVTAFVYDS----TCKLLVVSSKGNAFIVEESEI--IANTRK-GKTFLKVSSEEKMK 651 ++ I T +S L + G IV+ + + AN R+ G L + E+++ Sbjct: 592 DESIQTVINVESDRSDDAYLFFTTRHG---IVKRTSVKEFANIRQNGLKALNLKDEDELI 648 Query: 652 LVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSR-GKGVRLQSYKDG 695 V+ GD ++G + F+ + MSR GV+ + ++G Sbjct: 649 NVLLTEGDMDIIIGTKFGYAVRFNQSAVRGMSRIATGVKGVNLREG 694 >gi|26248619|ref|NP_754659.1| DNA gyrase subunit A [Escherichia coli CFT073] gi|91211524|ref|YP_541510.1| DNA gyrase subunit A [Escherichia coli UTI89] gi|117624425|ref|YP_853338.1| DNA gyrase subunit A [Escherichia coli APEC O1] gi|215487448|ref|YP_002329879.1| DNA gyrase subunit A [Escherichia coli O127:H6 str. E2348/69] gi|218559148|ref|YP_002392061.1| DNA gyrase subunit A [Escherichia coli S88] gi|218690394|ref|YP_002398606.1| DNA gyrase subunit A [Escherichia coli ED1a] gi|227887288|ref|ZP_04005093.1| DNA gyrase subunit A [Escherichia coli 83972] gi|237704706|ref|ZP_04535187.1| subunit A [Escherichia sp. 3_2_53FAA] gi|300983263|ref|ZP_07176502.1| DNA gyrase, A subunit [Escherichia coli MS 45-1] gi|301048980|ref|ZP_07195968.1| DNA gyrase, A subunit [Escherichia coli MS 185-1] gi|306814656|ref|ZP_07448818.1| DNA gyrase subunit A [Escherichia coli NC101] gi|331658310|ref|ZP_08359272.1| DNA gyrase, A subunit [Escherichia coli TA206] gi|26109024|gb|AAN81227.1|AE016763_186 DNA gyrase subunit A [Escherichia coli CFT073] gi|91073098|gb|ABE07979.1| DNA gyrase subunit A [Escherichia coli UTI89] gi|115513549|gb|ABJ01624.1| DNA gyrase subunit A [Escherichia coli APEC O1] gi|215265520|emb|CAS09923.1| DNA gyrase (type II topoisomerase), subunit A [Escherichia coli O127:H6 str. E2348/69] gi|218365917|emb|CAR03659.1| DNA gyrase (type II topoisomerase), subunit A [Escherichia coli S88] gi|218427958|emb|CAR08878.2| DNA gyrase (type II topoisomerase), subunit A [Escherichia coli ED1a] gi|222033992|emb|CAP76733.1| DNA gyrase subunit A [Escherichia coli LF82] gi|226901072|gb|EEH87331.1| subunit A [Escherichia sp. 3_2_53FAA] gi|227835638|gb|EEJ46104.1| DNA gyrase subunit A [Escherichia coli 83972] gi|294491822|gb|ADE90578.1| DNA gyrase, A subunit [Escherichia coli IHE3034] gi|300299211|gb|EFJ55596.1| DNA gyrase, A subunit [Escherichia coli MS 185-1] gi|300408597|gb|EFJ92135.1| DNA gyrase, A subunit [Escherichia coli MS 45-1] gi|305852050|gb|EFM52502.1| DNA gyrase subunit A [Escherichia coli NC101] gi|307554297|gb|ADN47072.1| DNA gyrase [Escherichia coli ABU 83972] gi|307626231|gb|ADN70535.1| DNA gyrase subunit A [Escherichia coli UM146] gi|312946852|gb|ADR27679.1| DNA gyrase subunit A [Escherichia coli O83:H1 str. NRG 857C] gi|315285852|gb|EFU45292.1| DNA gyrase, A subunit [Escherichia coli MS 110-3] gi|315292186|gb|EFU51538.1| DNA gyrase, A subunit [Escherichia coli MS 153-1] gi|315298065|gb|EFU57334.1| DNA gyrase, A subunit [Escherichia coli MS 16-3] gi|320196099|gb|EFW70723.1| DNA gyrase subunit A [Escherichia coli WV_060327] gi|323188042|gb|EFZ73337.1| DNA gyrase, A subunit [Escherichia coli RN587/1] gi|323952025|gb|EGB47899.1| hypothetical protein ERKG_01737 [Escherichia coli H252] gi|323955999|gb|EGB51752.1| hypothetical protein ERLG_02778 [Escherichia coli H263] gi|324006614|gb|EGB75833.1| DNA gyrase, A subunit [Escherichia coli MS 57-2] gi|331056558|gb|EGI28567.1| DNA gyrase, A subunit [Escherichia coli TA206] Length = 875 Score = 417 bits (1071), Expect = e-114, Method: Compositional matrix adjust. Identities = 256/659 (38%), Positives = 381/659 (57%), Gaps = 65/659 (9%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + V++ L+ YL YA+S I RA+PD+RDG KPVHRR+++AM+ +G D+ A+KKSA Sbjct: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG+IDGDSAAA RYTE R+ Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 ++A ++ ++++ VDF D Y+ + P V P+K PNLL NG+SGIAVGMAT+IP HN+ Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ LA ID+ +ISIE L+E+I GPDFPT II R I E+YR GRG +RAR Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAII-NGRRGIEEAYRTGRGKVYIRARA 246 Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314 VE + G I+V EIPYQV K+RLIEKIAEL+ KR+ + +RDES +D +RIV+ Sbjct: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K ++ ++++ +++ + ++ F +NM L G+ P++M L I+ ++ HRREV+ R Sbjct: 307 VKRDAVG-EVVLNNLYSQTQLQVSFGINMVALHHGQ-PKIMNLKDIIAAFVRHRREVVTR 364 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----------- 420 R+ F ++ R IL+ L +A NID II +IR+ P K +V+ Sbjct: 365 RTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAML 424 Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457 + LTE Q AIL+LRL+ L LE ++ E LL + Sbjct: 425 ERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQ 484 Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517 ++ +L S + I E+ V+E F G +R T + AD + +I + Sbjct: 485 IAELLRILGSADRLMEVIREELELVREQF------GDKRRTEITANSADINL--EDLITQ 536 Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569 E + V +S++G+++ + + SA KE D + L A+T D IL S+ Sbjct: 537 EDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSR 596 Query: 570 GKAYTLPAGNLLSG-RG-HGEAIQLLIDLNHNQDIVTAFV----YDSTCKLLVVSSKGN 622 G+ Y++ L RG G I L+ L ++ I TA + ++ K+ + ++ G Sbjct: 597 GRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERI-TAILPVTEFEEGVKVFMATANGT 654 >gi|15832368|ref|NP_311141.1| DNA gyrase subunit A [Escherichia coli O157:H7 str. Sakai] gi|168749632|ref|ZP_02774654.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC4113] gi|168754976|ref|ZP_02779983.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC4401] gi|168761339|ref|ZP_02786346.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC4501] gi|168767849|ref|ZP_02792856.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC4486] gi|168773053|ref|ZP_02798060.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC4196] gi|168780078|ref|ZP_02805085.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC4076] gi|168787135|ref|ZP_02812142.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC869] gi|168798393|ref|ZP_02823400.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC508] gi|195935604|ref|ZP_03080986.1| DNA gyrase subunit A [Escherichia coli O157:H7 str. EC4024] gi|208809585|ref|ZP_03251922.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC4206] gi|208814055|ref|ZP_03255384.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC4045] gi|208818870|ref|ZP_03259190.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC4042] gi|209395953|ref|YP_002271637.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC4115] gi|217326866|ref|ZP_03442949.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. TW14588] gi|218705761|ref|YP_002413280.1| DNA gyrase subunit A [Escherichia coli UMN026] gi|254794122|ref|YP_003078959.1| DNA gyrase subunit A [Escherichia coli O157:H7 str. TW14359] gi|261223316|ref|ZP_05937597.1| DNA gyrase (type II topoisomerase), subunit A [Escherichia coli O157:H7 str. FRIK2000] gi|261259134|ref|ZP_05951667.1| DNA gyrase (type II topoisomerase), subunit A [Escherichia coli O157:H7 str. FRIK966] gi|291283475|ref|YP_003500293.1| DNA gyrase, A subunit [Escherichia coli O55:H7 str. CB9615] gi|293405697|ref|ZP_06649689.1| DNA gyrase subunit A [Escherichia coli FVEC1412] gi|293410594|ref|ZP_06654170.1| A subunit [Escherichia coli B354] gi|293415524|ref|ZP_06658167.1| A subunit [Escherichia coli B185] gi|298381378|ref|ZP_06990977.1| DNA gyrase subunit A [Escherichia coli FVEC1302] gi|300936783|ref|ZP_07151676.1| DNA gyrase, A subunit [Escherichia coli MS 21-1] gi|331653665|ref|ZP_08354666.1| DNA gyrase, A subunit [Escherichia coli M718] gi|331673745|ref|ZP_08374508.1| DNA gyrase, A subunit [Escherichia coli TA280] gi|331683907|ref|ZP_08384503.1| DNA gyrase, A subunit [Escherichia coli H299] gi|13362583|dbj|BAB36537.1| DNA gyrase subunit A [Escherichia coli O157:H7 str. Sakai] gi|187771122|gb|EDU34966.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC4196] gi|188016049|gb|EDU54171.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC4113] gi|189002080|gb|EDU71066.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC4076] gi|189357583|gb|EDU76002.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC4401] gi|189362953|gb|EDU81372.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC4486] gi|189368282|gb|EDU86698.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC4501] gi|189372927|gb|EDU91343.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC869] gi|189378991|gb|EDU97407.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC508] gi|208729386|gb|EDZ78987.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC4206] gi|208735332|gb|EDZ84019.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC4045] gi|208738993|gb|EDZ86675.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC4042] gi|209157353|gb|ACI34786.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. EC4115] gi|209765558|gb|ACI81091.1| DNA gyrase subunit A [Escherichia coli] gi|209765560|gb|ACI81092.1| DNA gyrase subunit A [Escherichia coli] gi|209765562|gb|ACI81093.1| DNA gyrase subunit A [Escherichia coli] gi|209765564|gb|ACI81094.1| DNA gyrase subunit A [Escherichia coli] gi|209765566|gb|ACI81095.1| DNA gyrase subunit A [Escherichia coli] gi|217319233|gb|EEC27658.1| DNA gyrase, A subunit [Escherichia coli O157:H7 str. TW14588] gi|218432858|emb|CAR13752.1| DNA gyrase (type II topoisomerase), subunit A [Escherichia coli UMN026] gi|254593522|gb|ACT72883.1| DNA gyrase (type II topoisomerase), subunit A [Escherichia coli O157:H7 str. TW14359] gi|284922222|emb|CBG35304.1| DNA gyrase subunit A [Escherichia coli 042] gi|290763348|gb|ADD57309.1| DNA gyrase, A subunit [Escherichia coli O55:H7 str. CB9615] gi|291427905|gb|EFF00932.1| DNA gyrase subunit A [Escherichia coli FVEC1412] gi|291433172|gb|EFF06151.1| A subunit [Escherichia coli B185] gi|291471062|gb|EFF13546.1| A subunit [Escherichia coli B354] gi|298278820|gb|EFI20334.1| DNA gyrase subunit A [Escherichia coli FVEC1302] gi|300458113|gb|EFK21606.1| DNA gyrase, A subunit [Escherichia coli MS 21-1] gi|320192148|gb|EFW66793.1| DNA gyrase subunit A [Escherichia coli O157:H7 str. EC1212] gi|320641057|gb|EFX10536.1| DNA gyrase subunit A [Escherichia coli O157:H7 str. G5101] gi|320646446|gb|EFX15365.1| DNA gyrase subunit A [Escherichia coli O157:H- str. 493-89] gi|320651543|gb|EFX19923.1| DNA gyrase subunit A [Escherichia coli O157:H- str. H 2687] gi|320657295|gb|EFX25097.1| DNA gyrase subunit A [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320663122|gb|EFX30435.1| DNA gyrase subunit A [Escherichia coli O55:H7 str. USDA 5905] gi|323168608|gb|EFZ54288.1| DNA gyrase, A subunit [Shigella sonnei 53G] gi|326339578|gb|EGD63389.1| DNA gyrase subunit A [Escherichia coli O157:H7 str. 1125] gi|326344040|gb|EGD67801.1| DNA gyrase subunit A [Escherichia coli O157:H7 str. 1044] gi|331048514|gb|EGI20590.1| DNA gyrase, A subunit [Escherichia coli M718] gi|331069018|gb|EGI40410.1| DNA gyrase, A subunit [Escherichia coli TA280] gi|331078859|gb|EGI50061.1| DNA gyrase, A subunit [Escherichia coli H299] Length = 875 Score = 417 bits (1071), Expect = e-114, Method: Compositional matrix adjust. Identities = 256/659 (38%), Positives = 381/659 (57%), Gaps = 65/659 (9%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + V++ L+ YL YA+S I RA+PD+RDG KPVHRR+++AM+ +G D+ A+KKSA Sbjct: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG+IDGDSAAA RYTE R+ Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 ++A ++ ++++ VDF D Y+ + P V P+K PNLL NG+SGIAVGMAT+IP HN+ Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ LA ID+ +ISIE L+E+I GPDFPT II R I E+YR GRG +RAR Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAII-NGRRGIEEAYRTGRGKVYIRARA 246 Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314 VE + G I+V EIPYQV K+RLIEKIAEL+ KR+ + +RDES +D +RIV+ Sbjct: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K ++ ++++ +++ + ++ F +NM L G+ P++M L I+ ++ HRREV+ R Sbjct: 307 VKRDAVG-EVVLNNLYSQTQLQVSFGINMVALHHGQ-PKIMNLKDIIAAFVRHRREVVTR 364 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----------- 420 R+ F ++ R IL+ L +A NID II +IR+ P K +V+ Sbjct: 365 RTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAML 424 Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457 + LTE Q AIL+LRL+ L LE ++ E LL + Sbjct: 425 ERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQ 484 Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517 ++ +L S + I E+ V+E F G +R T + AD + +I + Sbjct: 485 IAELLRILGSADRLMEVIREELELVREQF------GDKRRTEITANSADINL--EDLITQ 536 Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569 E + V +S++G+++ + + SA KE D + L A+T D IL S+ Sbjct: 537 EDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSR 596 Query: 570 GKAYTLPAGNLLSG-RG-HGEAIQLLIDLNHNQDIVTAFV----YDSTCKLLVVSSKGN 622 G+ Y++ L RG G I L+ L ++ I TA + ++ K+ + ++ G Sbjct: 597 GRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERI-TAILPVTEFEEGVKVFMATANGT 654 >gi|299133975|ref|ZP_07027169.1| DNA gyrase, A subunit [Afipia sp. 1NLS2] gi|298591811|gb|EFI52012.1| DNA gyrase, A subunit [Afipia sp. 1NLS2] Length = 904 Score = 417 bits (1071), Expect = e-114, Method: Compositional matrix adjust. Identities = 249/683 (36%), Positives = 371/683 (54%), Gaps = 61/683 (8%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 ++K VS+ ++ YL YA+S I RA+PD RDG KPVHRRI++ M E G ++ ++KS Sbjct: 16 DIKPVSISDEMKRSYLDYAMSVIVSRALPDARDGLKPVHRRILYGMYENGFEWNKPYRKS 75 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 AR VG+VIGK HPHGDQSVYD+LVR+AQ F R PLI GQGNFG++DGD AA RYTE+R Sbjct: 76 ARTVGDVIGKYHPHGDQSVYDALVRMAQDFSMRVPLIDGQGNFGSVDGDMPAAMRYTESR 135 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 + ++A +L +D+D VDF+ Y+ + EP V P+KFPNLL NG GIAVGMAT+IP HN Sbjct: 136 LQKIAHSLLDDIDKDTVDFQPNYDSSEREPKVLPAKFPNLLVNGAGGIAVGMATNIPPHN 195 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 + E+ +A +ALIDNP + I+ L+ + GPDFPTGGII+ ++ I +Y LGRG +R + Sbjct: 196 LGEVIDACIALIDNPGLGIDDLINIVPGPDFPTGGIIL-GKQGIRSAYHLGRGSIVMRGK 254 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315 +E + + I+V+EIPYQV K+ ++E+IAEL+ K+I + D+RDES D V+ Sbjct: 255 VSIETIRKDREAIIVSEIPYQVNKATMVERIAELVRDKKIEGISDLRDESDRDGYRVVVE 314 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 R PD+++ ++ + ++T F NM L GR PQVM L +L ++A R V+ RR Sbjct: 315 LKRDAVPDVVLNQLYKFTPLQTSFGANMVALDGGR-PQVMNLKDLLTVFVAFRENVVSRR 373 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR------------ 420 + F + R IL GL IA NIDEII +IR P + ++SR Sbjct: 374 TKFLLNKARDRAHILVGLAIAVANIDEIIRVIRTSPDPATARDTLMSRDWPAKDVETMMM 433 Query: 421 --------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466 L+ Q AIL+LRL+ L L +I ELD L E +L Sbjct: 434 LIDDPRHRISADGTARLSMEQAKAILDLRLQRLTALGRDEISDELDKLAVEIADYLDILR 493 Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526 S + + E+ VK F+ RRT + + + +I++E + V +S+ Sbjct: 494 SRARVQGIVRDELTAVKNEFATP-----RRTVIVD---QEGEVEDEDLIQREDMVVTVSH 545 Query: 527 RGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---- 574 G++ R+ K S + ++ D + A T +L S+ G+ Y Sbjct: 546 AGYVKRVPLSTYRAQKRGGKGRSGMQTRDEDFVSRLFVASTHTPVLFFSSRGQVYKEKVW 605 Query: 575 -LPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD------STCKLLVVSSKGNAFIVE 627 LP + + G+A+ ++ + + I T S ++ ++ GN + Sbjct: 606 RLP---MAAPNARGKALINILPMEQGERITTIMPLPEDESSWSELDVMFATTGGNVRRNK 662 Query: 628 ESEIIANTRKGKTFLKVSSEEKM 650 S+ + R G +K+ E + Sbjct: 663 LSDFVDVRRSGIIAMKLDEGESI 685 >gi|312792290|ref|YP_004025213.1| DNA gyrase subunit A [Caldicellulosiruptor kristjanssonii 177R1B] gi|312179430|gb|ADQ39600.1| DNA gyrase, A subunit [Caldicellulosiruptor kristjanssonii 177R1B] Length = 809 Score = 417 bits (1071), Expect = e-114, Method: Compositional matrix adjust. Identities = 255/697 (36%), Positives = 409/697 (58%), Gaps = 34/697 (4%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 V ++ ++ Y+ YA+S I RA+PD+RDG KPVHRRI++AM+E+GL ++KSA +V Sbjct: 11 VEIQEEMKRSYIDYAMSVIVSRALPDVRDGLKPVHRRILYAMNEIGLTPDKPYRKSATVV 70 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G V+ K HPHGD +VY+SLVR+AQ F R+PL+ G GNFG++DGD AA RYTEARM+++ Sbjct: 71 GHVLAKYHPHGDAAVYESLVRMAQDFSMRHPLVDGHGNFGSVDGDPPAAMRYTEARMSRI 130 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A +L+ ++++ VDF ++E EP V PS+FPNLL NG+ GIAVGMAT+IP HN+ E+ Sbjct: 131 ALEMLRDIEKETVDFMPNFDESAKEPKVLPSRFPNLLVNGSQGIAVGMATNIPPHNLAEV 190 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 +A + L+DN +++ +++ I GPDFPTGG I+ ++ I ++Y G+G VRA+ +E Sbjct: 191 IDAIVYLLDNENATLDDIMKIIKGPDFPTGGYII-GKKGIKDAYATGKGKIIVRAKTTIE 249 Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFPKNR 318 + +G I+VTE+PY V K+RLIEKIAEL+ K+I + DIRDES E +RIV+ K + Sbjct: 250 QTSKGRQRIIVTELPYMVNKARLIEKIAELVHEKKIDGISDIRDESDKEGLRIVIEIK-K 308 Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378 D +++++ ++ + ++ F + M L + P+V+ L +L ++ H++EV+ RR+ + Sbjct: 309 DADANVVLKQLYKNTQLQDSFGIIMLAL-VDNQPKVLTLMDMLNLYIEHQKEVIVRRTRY 367 Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAILNLR 435 ++ + R IL+GL A +IDEII+IIR+ ++ K ++SRF TE Q AIL++R Sbjct: 368 DLRKAEERAHILEGLKKALDHIDEIISIIRSSKTVNEAKERLISRFQFTEAQAQAILDMR 427 Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495 L+ L LE +I+ EL L+ E ++L S I EI E+KE + R Sbjct: 428 LQRLTGLERQKIEEELAELIKMIEYYKNVLASDAMVKEIIKKEILEIKEKYKDE-----R 482 Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSVDLSALHFKE 547 RT + D + ++ IT +++ G+I+ L K ++ + +E Sbjct: 483 RTKIIQDEHEDFEEEELIQEQETVIT--LTHFGYIKRLPLDTYKSQKRGGRGITGISTRE 540 Query: 548 GDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602 D ++ T IL + G +AY +P G S + G AI LI + ++ I Sbjct: 541 EDFVEDVFVTTTHHYILFFTDKGRVFRLRAYEVPEG---SRQAKGTAIVNLIQIGKDEKI 597 Query: 603 V-TAFVYD-STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-D 659 T V D L++ + G V SE T+ GK + ++ ++ + V +G D Sbjct: 598 TATMAVKDFKEGYLMMCTKNGTIKKVLLSEFENTTKAGKKAITLADDDSLVDVKLTSGND 657 Query: 660 HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDG 695 + +V N ++F+ + + M R +GV+ + +DG Sbjct: 658 EIVLVSSNGYCVVFNENDVRVMGRSAQGVKGMTLEDG 694 >gi|78355051|ref|YP_386500.1| DNA gyrase subunit A [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78217456|gb|ABB36805.1| DNA gyrase subunit A [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 811 Score = 417 bits (1071), Expect = e-114, Method: Compositional matrix adjust. Identities = 274/759 (36%), Positives = 416/759 (54%), Gaps = 40/759 (5%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 V++ L++ YL Y+LS I RAIPD+RDG KPVHRRI+ A E+G + A KKSAR+V Sbjct: 5 VTIEDELKKSYLEYSLSVIIGRAIPDVRDGLKPVHRRIMFAQHELGNGYNRAPKKSARVV 64 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGD +VYD+LVR+AQ F R PL++GQGNFG+IDGDSAAA RYTE RM+++ Sbjct: 65 GDVIGKYHPHGDFAVYDALVRMAQDFSMRDPLVTGQGNFGSIDGDSAAAMRYTEVRMSRL 124 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A + +D++ V+FR Y+ EP V P+K PNLL NG+SGIAVGMAT+IP HN+ E+ Sbjct: 125 ASEFMADIDKETVEFRPNYDNTLQEPAVLPTKVPNLLLNGSSGIAVGMATNIPPHNLGEL 184 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 + L +D+PE ++ L + GPDFPTGG R + ++Y GRG ++R R VE Sbjct: 185 VDGLLLELDSPECTVADLAGLVKGPDFPTGGFCYAGR-GLRDAYETGRGTVKIRGRVEVE 243 Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFPKNR 318 E +G IV+ EIPY + KS L+EKIA L +RI + D+RDES +R+V+ K R Sbjct: 244 ERKKGFQSIVIREIPYALNKSSLVEKIAALANERRIEGITDLRDESDRRGIRVVIDLK-R 302 Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378 P++++ ++ + +ET F +NM + +G PQ++ L + + +L HRREV+ RR+ + Sbjct: 303 GTIPEIVINQLYKYTPLETSFGINM-LAVVGNRPQLLTLKKVFECFLQHRREVIIRRTHY 361 Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVDAILNLR 435 ++ + R IL+GL IA NIDE++ +IR P K ++ RFSL+E Q AIL++R Sbjct: 362 DLRKAEARAHILEGLRIALDNIDEVVELIRASKTPPEAKERLMQRFSLSEVQAQAILDMR 421 Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495 L+ L LE ++ E LL + E S+L + + I E++E+KE ++ R Sbjct: 422 LQRLTNLEHEKLIEEYRELLKKIEYFKSILENEEVLRGVIRDELKELKETYATP-----R 476 Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD--------LSALHFKE 547 RT E + ++ +I E + + +S RG+I+ S ++ +H + Sbjct: 477 RTEMLE-DELEGIDIED-LIPDEDVVITLSRRGYIKRTPLDSYQQQRRGGKGIAGVHTGD 534 Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTA 605 GD ++ L +LL + G+ + L + G G I L+ + N+ + TA Sbjct: 535 GDFVQDFLVTTNHQYLLLFTNKGRMFQLKVHQVPEGSRTAKGMHINNLLPMEENEWVNTA 594 Query: 606 FVYDSTC--KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV-VKVTGDHVA 662 K + S++ + + A R+ + V E +L+ V+ D+ Sbjct: 595 LTIREFTEEKYFLFSTRKGMVKRSSASLYAKARR-TGLIAVGLREGDELIMVREVDDNCE 653 Query: 663 VVGENRK--LLIFSIDQIPEMSRG----KGVRLQSYKDGGISDVICFKICEGLTWIDSAG 716 VV K + F + M R KG+ L S D S V C + GL Sbjct: 654 VVLTTEKGIAIRFGCGDVRPMGRSATGVKGIAL-SQDD---SVVACVTVQGGLESEIMTV 709 Query: 717 RSYNRSENDLLG--WLGKRGGVGSLVPKGFPRSGKFLSS 753 Y + L+ + RGG G + K P++G+ L + Sbjct: 710 SRYGYGKRTLIDRYRVQSRGGKGVINFKVTPKTGEVLGA 748 >gi|254719163|ref|ZP_05180974.1| DNA gyrase subunit A [Brucella sp. 83/13] gi|306838155|ref|ZP_07471011.1| DNA gyrase, A subunit [Brucella sp. NF 2653] gi|306406745|gb|EFM62968.1| DNA gyrase, A subunit [Brucella sp. NF 2653] Length = 934 Score = 417 bits (1071), Expect = e-114, Method: Compositional matrix adjust. Identities = 256/694 (36%), Positives = 384/694 (55%), Gaps = 61/694 (8%) Query: 2 GVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61 G D+++ ++ +S+ ++ YL YA+S I RA+PD+RDG KPVHRRI+HAM Sbjct: 9 GSDDMNGGPNGGPSGIEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAM 68 Query: 62 SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121 +EM L + ++KSA +VGEV+GK HPHGD S+YD+LVR+AQ F R PLI GQGNFG+I Sbjct: 69 NEMNLAYNRPYRKSAGVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLIDGQGNFGSI 128 Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181 DGD AA RYTE R+ +V E +L +D+D V+F+D Y+ + EPVV P++FPNLL NG+ Sbjct: 129 DGDPPAAMRYTECRLEKVTESLLSDIDKDTVNFQDNYDGREQEPVVLPARFPNLLVNGSG 188 Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241 GIAVGMAT+IP HN+ E+ + +ALIDNP I + +L+E I GPDFPTGGII+ R I Sbjct: 189 GIAVGMATNIPPHNLGEVIDGCVALIDNPAIELSELMELIPGPDFPTGGIIL-GRNGINS 247 Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301 +Y GRG +R R +E + I++TEIPYQV K+ +IEK+AEL+ KRI + D+ Sbjct: 248 AYTTGRGSVIMRGRATIEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKRIDGISDL 307 Query: 302 RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361 RDES + V+ R D+++ ++ + ++T F NM L+ G+ Q+ LD +L Sbjct: 308 RDESDREGYRVVVELKRDAVADVVLNQLYRYTPLQTSFGCNMVALNGGKPEQLTLLD-ML 366 Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP----KPVM 417 + ++A R EV+ RR+ F + R +L GL IA NIDE+IA+IR P + +M Sbjct: 367 RAFVAFREEVVTRRTKFLLNKARDRAHVLVGLAIAVANIDEVIALIRRAPDPATAREQLM 426 Query: 418 VSR-------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELD 452 R ++L+E Q AIL+LRL+ L L ++ EL+ Sbjct: 427 ERRWPAVDVAPLIRLIDDPRHTLNEDNTYNLSEEQARAILDLRLQRLTALGRDEVADELN 486 Query: 453 NLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ 512 + E +L S + N + E+ V++ F+ RRT E+ + Sbjct: 487 KIGEEIRDYLDILGSRLRVMNIVKEEMIAVRDEFATP-----RRT---EIGFGGAEMDDE 538 Query: 513 AMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRIL 564 +I +E + V +S+ G+I R+ + S + KE D + A++ +L Sbjct: 539 DLIAREDMVVTVSHAGYIKRVPLTTYRAQRRGGKGRSGMTTKEEDFVTRLFVANSHTPVL 598 Query: 565 LLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY----DSTCKLL 615 S+ G K + LP G S G+A+ ++ L + I T DS L Sbjct: 599 FFSSRGIVYKEKVWRLPVGTPQS---RGKALINMLPLQQGERITTIMPLPEDEDSWANLD 655 Query: 616 VV--SSKGNAFIVEESEIIANTRKGKTFLKVSSE 647 V+ +++G + S+ + R GK +K+ E Sbjct: 656 VMFSTTRGTVRRNKLSDFVQVNRNGKIAMKLEDE 689 >gi|218700698|ref|YP_002408327.1| DNA gyrase subunit A [Escherichia coli IAI39] gi|218370684|emb|CAR18495.1| DNA gyrase (type II topoisomerase), subunit A [Escherichia coli IAI39] Length = 875 Score = 417 bits (1071), Expect = e-114, Method: Compositional matrix adjust. Identities = 256/659 (38%), Positives = 381/659 (57%), Gaps = 65/659 (9%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + V++ L+ YL YA+S I RA+PD+RDG KPVHRR+++AM+ +G D+ A+KKSA Sbjct: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG+IDGDSAAA RYTE R+ Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 ++A ++ ++++ VDF D Y+ + P V P+K PNLL NG+SGIAVGMAT+IP HN+ Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ LA ID+ +ISIE L+E+I GPDFPT II R I E+YR GRG +RAR Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAII-NGRRGIEEAYRTGRGKVYIRARA 246 Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314 VE + G I+V EIPYQV K+RLIEKIAEL+ KR+ + +RDES +D +RIV+ Sbjct: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K ++ ++++ +++ + ++ F +NM L G+ P++M L I+ ++ HRREV+ R Sbjct: 307 VKRDAVG-EVVLNNLYSQTQLQVSFGINMVALHHGQ-PKIMNLKDIIAAFVRHRREVVTR 364 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----------- 420 R+ F ++ R IL+ L +A NID II +IR+ P K +V+ Sbjct: 365 RTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAML 424 Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457 + LTE Q AIL+LRL+ L LE ++ E LL + Sbjct: 425 ERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQ 484 Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517 ++ +L S + I E+ V+E F G +R T + AD + +I + Sbjct: 485 IAELLRILGSADRLMEVIREELELVREQF------GDKRRTEITANSADINL--EDLITQ 536 Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569 E + V +S++G+++ + + SA KE D + L A+T D IL S+ Sbjct: 537 EDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSR 596 Query: 570 GKAYTLPAGNLLSG-RG-HGEAIQLLIDLNHNQDIVTAFV----YDSTCKLLVVSSKGN 622 G+ Y++ L RG G I L+ L ++ I TA + ++ K+ + ++ G Sbjct: 597 GRVYSMKVYQLPGATRGARGRPIVNLLPLEQDERI-TAILPVTEFEEGVKVFMATANGT 654 >gi|331647885|ref|ZP_08348977.1| DNA gyrase, A subunit [Escherichia coli M605] gi|281179322|dbj|BAI55652.1| DNA gyrase subunit A [Escherichia coli SE15] gi|331043609|gb|EGI15747.1| DNA gyrase, A subunit [Escherichia coli M605] Length = 875 Score = 417 bits (1071), Expect = e-114, Method: Compositional matrix adjust. Identities = 256/659 (38%), Positives = 381/659 (57%), Gaps = 65/659 (9%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + V++ L+ YL YA+S I RA+PD+RDG KPVHRR+++AM+ +G D+ A+KKSA Sbjct: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG+IDGDSAAA RYTE R+ Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 ++A ++ ++++ VDF D Y+ + P V P+K PNLL NG+SGIAVGMAT+IP HN+ Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ LA ID+ +ISIE L+E+I GPDFPT II R I E+YR GRG +RAR Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAII-NGRRGIEEAYRTGRGKVYIRARA 246 Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314 VE + G I+V EIPYQV K+RLIEKIAEL+ KR+ + +RDES +D +RIV+ Sbjct: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K ++ ++++ +++ + ++ F +NM L G+ P++M L I+ ++ HRREV+ R Sbjct: 307 VKRDAVG-EVVLNNLYSQTQLQVSFGINMVALHHGQ-PKIMNLKDIIAAFVRHRREVVTR 364 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----------- 420 R+ F ++ R IL+ L +A NID II +IR+ P K +V+ Sbjct: 365 RTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAML 424 Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457 + LTE Q AIL+LRL+ L LE ++ E LL + Sbjct: 425 ERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQ 484 Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517 ++ +L S + I E+ V+E F G +R T + AD + +I + Sbjct: 485 IAELLRILGSADRLMEVIREELELVREQF------GDKRRTEITANSADINL--EDLITQ 536 Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569 E + V +S++G+++ + + SA KE D + L A+T D IL S+ Sbjct: 537 EDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSR 596 Query: 570 GKAYTLPAGNLLSG-RG-HGEAIQLLIDLNHNQDIVTAFV----YDSTCKLLVVSSKGN 622 G+ Y++ L RG G I L+ L ++ I TA + ++ K+ + ++ G Sbjct: 597 GRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERI-TAILPVTEFEEGVKVFMATANGT 654 >gi|220903292|ref|YP_002478604.1| DNA gyrase subunit A [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219867591|gb|ACL47926.1| DNA gyrase, A subunit [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 855 Score = 417 bits (1071), Expect = e-114, Method: Compositional matrix adjust. Identities = 265/751 (35%), Positives = 418/751 (55%), Gaps = 39/751 (5%) Query: 12 LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71 + E +S+ L + YL Y+LS I RAIPD RDG KPVHRRI+ A E+ ++ Sbjct: 1 MAEMQQPQISIETELRKSYLEYSLSVIIGRAIPDARDGLKPVHRRIMFAQYELANNYNRP 60 Query: 72 FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131 KKSARIVG+VIGK HPHGD +VYD+LVRLAQ F R PL+ GQGNFG+IDGD+ AA RY Sbjct: 61 HKKSARIVGDVIGKYHPHGDSAVYDALVRLAQDFSMRDPLVDGQGNFGSIDGDAPAAMRY 120 Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191 TE RM+++A+ L +D++ VDFR Y+ EP V PSK PNLL NG+SGIAVGMAT+I Sbjct: 121 TEVRMSRLAQEFLGDLDKNTVDFRPNYDNTLQEPTVMPSKVPNLLLNGSSGIAVGMATNI 180 Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251 P HN+ E+C+A L+D+P+ SI+ L+E++ GPDFPT G + + + ++Y GRG + Sbjct: 181 PPHNLGELCDALQLLLDDPQCSIDDLMEHVKGPDFPTSGYVYAGK-GLYDAYHTGRGTVK 239 Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVR 310 VR R +E+ + + IV+ EIPY + KS L+EKIA L+ ++I + D+RDES +R Sbjct: 240 VRGRMEIEDRKKSAQSIVIREIPYGLNKSSLVEKIAALVNDRKIDGITDLRDESDRRGIR 299 Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370 +V+ K R P++++ +++ + +E+ F +NM + R PQ++ L L ++ HRRE Sbjct: 300 VVIDLK-RGTIPEIVINALYKFTPLESSFGINMLAVVDNR-PQLLNLKSALTCFVDHRRE 357 Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQ 427 V+ RR+ + ++ + R IL+GL +A NIDE++A+IR + D+ + ++ RF L+E Q Sbjct: 358 VVIRRTRYDLEKAEARAHILEGLRVAIDNIDEVVALIRASASPDEARAALMKRFELSELQ 417 Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487 AIL +RL+ L L+ ++ +E +LL + E S+L + + ++ EIRE++E F+ Sbjct: 418 AKAILEMRLQRLTGLQREELMAEYKDLLQKIEFYRSILENTEVLRGELKREIREIRETFA 477 Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSVD 539 RRT + D + +I E + + +S RG+++ K Sbjct: 478 TP-----RRTEVLREALTDIDI--EDLIPDEDVVITLSRRGYMKRTGLENYQQQKRGGKG 530 Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLN 597 ++AL+ + D ++ L + L + G+ + L + G G I L+ L Sbjct: 531 IAALYTSDDDYVQEFLSTTNHQFLCLFTNKGRMHQLKVHQVPEGSRTAKGVHINNLLPLE 590 Query: 598 HNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKT-FLKVSSEEKMKLV 653 + + T + L V+ +G +V+ S R KT + V E +LV Sbjct: 591 DGEWVTTVLALREFAEDKYFLFVTKRG---MVKRSSASLYARCRKTGLMAVGLREDDELV 647 Query: 654 V--KVTGD-HVAVVGENRKLLIFSIDQIPEMSR----GKGVRLQSYKDGGISDVICFKIC 706 V + D H+ + + + FS + M R KG+ L+ +D ++ VI + Sbjct: 648 VVRPIRNDSHIVLATADGIAIRFSCKDVRPMGRVATGVKGIALRR-QDFVVAGVIVKETD 706 Query: 707 EGLTWIDSAGRSYNRSENDLLGWLGKRGGVG 737 + + + + + + L L RGG G Sbjct: 707 QTTEIMSISANGFGKRTSIELYRLQSRGGKG 737 >gi|115314422|ref|YP_763145.1| DNA gyrase, subunit A [Francisella tularensis subsp. holarctica OSU18] gi|115129321|gb|ABI82508.1| DNA topoisomerase (ATP-hydrolyzing) [Francisella tularensis subsp. holarctica OSU18] Length = 868 Score = 417 bits (1071), Expect = e-114, Method: Compositional matrix adjust. Identities = 258/736 (35%), Positives = 419/736 (56%), Gaps = 87/736 (11%) Query: 11 TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70 +++ + ++++ L++ YL YA+S I RA+PD+RDG KPVHRR++ AM+E+ + Sbjct: 2 SIITKESSSINIEKELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELSNYYNR 61 Query: 71 AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130 +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG++DGDS AA R Sbjct: 62 PYKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYTLVDGQGNFGSVDGDSPAAMR 121 Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190 YTE RM ++ +L +D++ VDF Y+ + P V P++ PNLL NG+SGIAVGMAT+ Sbjct: 122 YTEIRMEKLTHELLIDIDKETVDFSPNYDNTELVPDVLPTRVPNLLVNGSSGIAVGMATN 181 Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250 IP HN+ E+ +ALIDNP ++IE+L+EYI PDFPTG I + I+E+Y+ GRG Sbjct: 182 IPPHNMTEVINGTIALIDNPNLTIEELIEYIPAPDFPTGSYI-NGTDGILEAYKTGRGRV 240 Query: 251 RVRARWCV-EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED- 308 +RA+ + E+ G I+VTEIPYQV K++L+EKIAEL+ K++ + ++RDES +D Sbjct: 241 IMRAKADIHEDEASGKAQIIVTEIPYQVNKAKLVEKIAELVKDKKVAGISELRDESDKDG 300 Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368 +R+V+ K R P++++ +++ + ++ F +NM LS R P+++ L IL++++ HR Sbjct: 301 IRVVIDLK-RDESPEVVLNTLYAQTQLQCSFGINMVALSDNR-PKLLNLKEILEQFIKHR 358 Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----- 420 +EV+ RR+ F ++ R IL+GLL++ NIDE+I +I+ P K M++R Sbjct: 359 KEVVTRRTIFELRKSKERAHILEGLLLSLANIDEMIELIKASPSPADAKESMLARSWNGS 418 Query: 421 ------------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSE 450 ++LTE Q DAIL LRL L LE+ +I +E Sbjct: 419 MVKSMLEGVDVKMYRKETLASYYGIQVDSSYNLTEEQADAILALRLHRLTGLEQDKIVNE 478 Query: 451 LDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATL 510 L+ + + S+L+ K+ + E+ E+++ + +R++ E SR D Sbjct: 479 FKELIDRIKYLISILSDIKELICVVKDELVEIRDNYGD-----QRKSEIIE-SRLD--LT 530 Query: 511 QQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDR 562 ++ +I +E + V +S G++++ K V SA KE DS+ + A T D Sbjct: 531 REDLIAEEDMVVTLSMDGYVKTQPLSMYNAQKRGGVGKSATKTKEEDSIFKLMLASTHDT 590 Query: 563 ILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV----YDSTCK 613 +L S+ G K Y P + +S G I ++ L ++ I TA + ++ Sbjct: 591 MLCFSSLGRVYWSKVYDFPVASRIS---KGRPINNILPLEKDERI-TAMMPISQFNEGWY 646 Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIF 673 + + + G V+ SE GK + ++ +++ +VA+ N+++++F Sbjct: 647 VFMATKLGRVKKVDLSEFARPRSTGKIAIGLNDGDELS--------YVALTDGNKQIMMF 698 Query: 674 SIDQIPEMSRGKGVRL 689 S GK +R Sbjct: 699 S-------DAGKAIRF 707 >gi|325496729|gb|EGC94588.1| DNA gyrase subunit A [Escherichia fergusonii ECD227] Length = 878 Score = 417 bits (1071), Expect = e-114, Method: Compositional matrix adjust. Identities = 256/659 (38%), Positives = 381/659 (57%), Gaps = 65/659 (9%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + V++ L+ YL YA+S I RA+PD+RDG KPVHRR+++AM+ +G D+ A+KKSA Sbjct: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG+IDGDSAAA RYTE R+ Sbjct: 68 RVVGDVIGKYHPHGDLAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 ++A ++ ++++ VDF D Y+ + P V P+K PNLL NG+SGIAVGMAT+IP HN+ Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ LA ID+ +ISIE L+E+I GPDFPT II R I E+YR GRG +RAR Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAII-NGRRGIEEAYRTGRGKVYIRARA 246 Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314 VE + G I+V EIPYQV K+RLIEKIAEL+ KR+ + +RDES +D +RIV+ Sbjct: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K ++ ++++ +++ + ++ F +NM L G+ P++M L I+ ++ HRREV+ R Sbjct: 307 VKRDAVG-EVVLNNLYSQTQLQVSFGINMVALHHGQ-PKIMNLKDIIAAFVRHRREVVTR 364 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----------- 420 R+ F ++ R IL+ L +A NID II +IR+ P K +V+ Sbjct: 365 RTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAML 424 Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457 + LTE Q AIL+LRL+ L LE ++ E LL + Sbjct: 425 ERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQ 484 Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517 ++ +L S + I E+ V+E F G +R T + AD + +I + Sbjct: 485 IAELLRILGSADRLMEVIREELELVREQF------GDKRRTEITANSADINL--EDLITQ 536 Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569 E + V +S++G+++ + + SA KE D + L A+T D IL S+ Sbjct: 537 EDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSR 596 Query: 570 GKAYTLPAGNLLSG-RG-HGEAIQLLIDLNHNQDIVTAFV----YDSTCKLLVVSSKGN 622 G+ Y++ L RG G I L+ L ++ I TA + ++ K+ + ++ G Sbjct: 597 GRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERI-TAILPVTEFEEGVKVFMATANGT 654 >gi|323977572|gb|EGB72658.1| hypothetical protein ERFG_01094 [Escherichia coli TW10509] Length = 875 Score = 417 bits (1071), Expect = e-114, Method: Compositional matrix adjust. Identities = 256/659 (38%), Positives = 381/659 (57%), Gaps = 65/659 (9%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + V++ L+ YL YA+S I RA+PD+RDG KPVHRR+++AM+ +G D+ A+KKSA Sbjct: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG+IDGDSAAA RYTE R+ Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 ++A ++ ++++ VDF D Y+ + P V P+K PNLL NG+SGIAVGMAT+IP HN+ Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ LA ID+ +ISIE L+E+I GPDFPT II R I E+YR GRG +RAR Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAII-NGRRGIEEAYRTGRGKVYIRARA 246 Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314 VE + G I+V EIPYQV K+RLIEKIAEL+ KR+ + +RDES +D +RIV+ Sbjct: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K ++ ++++ +++ + ++ F +NM L G+ P++M L I+ ++ HRREV+ R Sbjct: 307 VKRDAVG-EVVLNNLYSQTQLQVSFGINMVALHHGQ-PKIMNLKDIIAAFVRHRREVVTR 364 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----------- 420 R+ F ++ R IL+ L +A NID II +IR+ P K +V+ Sbjct: 365 RTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAML 424 Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457 + LTE Q AIL+LRL+ L LE ++ E LL + Sbjct: 425 ERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQ 484 Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517 ++ +L S + I E+ V+E F G +R T + AD + +I + Sbjct: 485 IAELLRILGSADRLMEVIREELELVREQF------GDKRRTEITANSADINL--EDLITQ 536 Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569 E + V +S++G+++ + + SA KE D + L A+T D IL S+ Sbjct: 537 EDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSR 596 Query: 570 GKAYTLPAGNLLSG-RG-HGEAIQLLIDLNHNQDIVTAFV----YDSTCKLLVVSSKGN 622 G+ Y++ L RG G I L+ L ++ I TA + ++ K+ + ++ G Sbjct: 597 GRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERI-TAILPVTEFEEGVKVFMATANGT 654 >gi|261752404|ref|ZP_05996113.1| DNA gyrase subunit A [Brucella suis bv. 5 str. 513] gi|261742157|gb|EEY30083.1| DNA gyrase subunit A [Brucella suis bv. 5 str. 513] Length = 922 Score = 417 bits (1071), Expect = e-114, Method: Compositional matrix adjust. Identities = 255/679 (37%), Positives = 379/679 (55%), Gaps = 61/679 (8%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 ++ +S+ ++ YL YA+S I RA+PD+RDG KPVHRRI+HAM+EM L + ++KSA Sbjct: 12 IEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAMNEMNLAYNRPYRKSA 71 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 +VGEV+GK HPHGD S+YD+LVR+AQ F R PLI GQGNFG+IDGD AA RYTE R+ Sbjct: 72 GVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLIDGQGNFGSIDGDPPAAMRYTECRL 131 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 +V E +L +D+D V+F+D Y+ + EPVV P++FPNLL NG+ GIAVGMAT+IP HN+ Sbjct: 132 EKVTESLLSDIDKDTVNFQDNYDGREQEPVVLPARFPNLLVNGSGGIAVGMATNIPPHNL 191 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ + +ALIDNP I + +L+E I GPDFPTGGII+ R I +Y GRG +R R Sbjct: 192 GEVIDGCVALIDNPAIELSELMELIPGPDFPTGGIIL-GRNGINSAYTTGRGSVIMRGRA 250 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316 +E + I++TEIPYQV K+ +IEK+AEL+ KRI + D+RDES + V+ Sbjct: 251 TIEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKRIDGISDLRDESDREGYRVVVEL 310 Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376 R D+++ ++ + ++T F NM L+ G+ Q+ LD +L+ ++A R EV+ RR+ Sbjct: 311 KRDAVADVVLNQLYRYTPLQTSFGCNMVALNGGKPEQLTLLD-MLRAFVAFREEVVTRRT 369 Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP----KPVMVSR------------ 420 F + R +L GL IA NIDE+IA+IR P + +M R Sbjct: 370 KFLLNKARDRAHVLVGLAIAVANIDEVIALIRRAPDPATAREQLMERRWPAVDVAPLIRL 429 Query: 421 -------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467 ++L+E Q AIL+LRL+ L L ++ EL+ + E +L S Sbjct: 430 IDDPRHTLNEDNTYNLSEEQARAILDLRLQRLTALGRDEVADELNKIGEEIRDYLDILGS 489 Query: 468 GKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNR 527 + N + E+ V++ F+ RRT E+ + +I +E + V +S+ Sbjct: 490 RLRVMNIVKEEMIAVRDEFATP-----RRT---EIGFGGAEMDDEDLIAREDMVVTVSHA 541 Query: 528 GWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYT 574 G+I R+ + S + KE D + A+T +L S+ G K + Sbjct: 542 GYIKRVPLTTYRAQRRGGKGRSGMATKEEDFVTRLFVANTHTPVLFFSSRGIVYKEKVWR 601 Query: 575 LPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY----DSTCKLLVV--SSKGNAFIVEE 628 LP G S G+A+ ++ L + I T DS L V+ +++G + Sbjct: 602 LPVGTPQS---RGKALINMLPLQQGERITTIMPLPEDEDSWANLDVMFSTTRGTVRRNKL 658 Query: 629 SEIIANTRKGKTFLKVSSE 647 S+ + R GK +K+ E Sbjct: 659 SDFVQVNRNGKIAMKLEDE 677 >gi|270160083|ref|ZP_06188739.1| DNA gyrase A subunit [Legionella longbeachae D-4968] gi|289165138|ref|YP_003455276.1| DNA gyrase, subunit A, type II topoisomerase [Legionella longbeachae NSW150] gi|269988422|gb|EEZ94677.1| DNA gyrase A subunit [Legionella longbeachae D-4968] gi|288858311|emb|CBJ12179.1| DNA gyrase, subunit A, type II topoisomerase [Legionella longbeachae NSW150] Length = 866 Score = 417 bits (1071), Expect = e-114, Method: Compositional matrix adjust. Identities = 255/669 (38%), Positives = 386/669 (57%), Gaps = 74/669 (11%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 V V++ L++ YL YA+S I RA+PD+RDG KPVHRR+++AMSE+G D+ +KKSA Sbjct: 8 VLPVNIEDELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSELGNDWNKPYKKSA 67 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG++DGD+ AA RYTE RM Sbjct: 68 RVVGDVIGKYHPHGDTAVYDTIVRMAQPFSMRYLLVDGQGNFGSVDGDAPAAMRYTEVRM 127 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 ++VA +L ++++ VDF Y+E + PVV PS+ PNLL NG+SGIAVGMAT+IP HN+ Sbjct: 128 SKVAHALLADLEKETVDFSPNYDETEFAPVVLPSRVPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ A +AL+D+PEI ++++++ I GPDFPT II R I++ YR G+G +RAR Sbjct: 188 TEVINACIALVDDPEIGLDEIMQIIPGPDFPTAAII-NGRAGIIQGYRTGKGRAIIRART 246 Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLF 314 +E + G I++TE+PYQV K+RL+E+IAEL+ K+I + +RDES + +R+V+ Sbjct: 247 EIETDEDTGRQSIIITELPYQVNKARLVERIAELVRDKKIEGISGLRDESDKQGMRVVIE 306 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K + + D+++ +++ + M+ F +NM L G+ P+ + L IL+ ++ HRREV+ R Sbjct: 307 LKRQEI-ADVILNNLYTQTQMQNVFGINMVALVDGQ-PRTLNLKQILEYFIKHRREVVTR 364 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK----------------PVMV 418 R+ F ++ R +L+GL IA NIDE+IA+I+ P+ M+ Sbjct: 365 RTLFELKKARSRAHLLEGLGIALANIDEMIALIKQSPTPQDAKQALLAKLWQPGLVKTML 424 Query: 419 SR---------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457 R + L+E Q AIL LRL L LE+ +I E + LL Sbjct: 425 ERAGSDASRPDDLAAEFGLSTEGYKLSEAQAQAILELRLHRLTALEQDKILDEFEELLKL 484 Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517 ++ +L S ++ I E E+K F RRT E S+ D + +I + Sbjct: 485 IRELLEILASPERLMQVIRDEFVEIKTQFGDE-----RRTEIIE-SQEDLTI--EDLITE 536 Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569 E + V +S++G+++ + + SA + K+ D + + A T D +L S Sbjct: 537 ENVVVTLSHQGYVKYQPISAYQAQRRGGKGKSATNVKDEDFVSRLVIASTHDTLLCFSNH 596 Query: 570 G-----KAYTLPAGNLLS-GR--------GHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615 G KAY LP + +S GR GE I ++ + D +V+ +T K Sbjct: 597 GKLYWLKAYELPLASRISRGRPIINILPLAEGEEINAMLPVREYLD--GYYVFMATKKGT 654 Query: 616 VVSSKGNAF 624 V NAF Sbjct: 655 VKKVPLNAF 663 >gi|194427093|ref|ZP_03059644.1| DNA gyrase, A subunit [Escherichia coli B171] gi|194414714|gb|EDX30985.1| DNA gyrase, A subunit [Escherichia coli B171] Length = 875 Score = 417 bits (1071), Expect = e-114, Method: Compositional matrix adjust. Identities = 256/659 (38%), Positives = 381/659 (57%), Gaps = 65/659 (9%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + V++ L+ YL YA+S I RA+PD+RDG KPVHRR+++AM+ +G D+ A+KKSA Sbjct: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG+IDGDSAAA RYTE R+ Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 ++A ++ ++++ VDF D Y+ + P V P+K PNLL NG+SGIAVGMAT+IP HN+ Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ LA ID+ +ISIE L+E+I GPDFPT II R I E+YR GRG +RAR Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAII-NGRRGIEEAYRTGRGKVYIRARA 246 Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314 VE + G I+V EIPYQV K+RLIEKIAEL+ KR+ + +RDES +D +RIV+ Sbjct: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K ++ ++++ +++ + ++ F +NM L G+ P++M L I+ ++ HRREV+ R Sbjct: 307 VKRDAVG-EVVLNNLYSQTQLQVSFGINMVALHHGQ-PKIMNLKDIIAAFVRHRREVVTR 364 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----------- 420 R+ F ++ R IL+ L +A NID II +IR+ P K +V+ Sbjct: 365 RTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAML 424 Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457 + LTE Q AIL+LRL+ L LE ++ E LL + Sbjct: 425 ERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQ 484 Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517 ++ +L S + I E+ V+E F G +R T + AD + +I + Sbjct: 485 IAELLRILGSADRLMEVIREELELVREQF------GDKRRTEITANSADINL--EDLITQ 536 Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569 E + V +S++G+++ + + SA KE D + L A+T D IL S+ Sbjct: 537 EDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSR 596 Query: 570 GKAYTLPAGNLLSG-RG-HGEAIQLLIDLNHNQDIVTAFV----YDSTCKLLVVSSKGN 622 G+ Y++ L RG G I L+ L ++ I TA + ++ K+ + ++ G Sbjct: 597 GRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERI-TAILPVTEFEEGVKVFMATANGT 654 >gi|110003911|emb|CAK98251.1| dna gyrase subunit a protein [Spiroplasma citri] Length = 821 Score = 416 bits (1070), Expect = e-114, Method: Compositional matrix adjust. Identities = 246/693 (35%), Positives = 409/693 (59%), Gaps = 45/693 (6%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 ++ + + ++ +L YA+S I RAIPD+RDG KPVHRRII+AM ++ + + KKSA Sbjct: 15 IRDIDIADEMKNGFLDYAMSVIVSRAIPDVRDGLKPVHRRIIYAMWDLKMTYEKQHKKSA 74 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 RIVGEVIGK HPHGD +VY+++VR+AQ F RYPLI G GNFG++DGD AA RYTEA+M Sbjct: 75 RIVGEVIGKYHPHGDTAVYEAMVRMAQDFSYRYPLIDGHGNFGSMDGDPPAAMRYTEAKM 134 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 +++A I++ ++++ F D Y+ + EP P FPNLL NG SGIAVGMAT+IP HN+ Sbjct: 135 SKIAGEIIKDIEKETTIFIDNYDGSEEEPTFLPGYFPNLLVNGASGIAVGMATNIPPHNL 194 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ + +A+ NPEI+ +L++ I GPDFPTG +I + ++++Y G G +R++ Sbjct: 195 NEVIDGVIAVTKNPEITTVELMKIIKGPDFPTGALIT-AGNGLIKAYETGNGAITIRSKI 253 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFP 315 +EE I+V+EIPYQ+ K++L+E+IAEL+ K I + D+RDES E VR+VL Sbjct: 254 DIEE-NNNKRRIIVSEIPYQINKAKLLERIAELVRDKIINGIIDLRDESNMEGVRVVLEL 312 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 K R ++++ ++ L+ ++T F LN+ L + P+VM L ILK ++ H+ +++ +R Sbjct: 313 K-RDAQENVILNKLYKLTPLQTNFSLNILALYKNQ-PRVMGLKQILKYFIEHQIDIIIKR 370 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFSLTENQVDAIL 432 S F ++ R+ IL+GL IA NIDE+IAII+ + ++++F+L Q AIL Sbjct: 371 SQFELKKNRNRLIILEGLKIALDNIDEVIAIIKQSQTTQIASDALINKFNLVGEQARAIL 430 Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492 +RL+ L LE +I +E+ ++ +++ ++N+ ++Q + + E+ E+K+ K D Sbjct: 431 EMRLQRLTGLEIEKINNEIKDIKVAITELEEIINNSEKQIDIMITELTEIKK---KYGDE 487 Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG---- 548 R + E++ D + +I +E ++++ G+++ + S D L + G Sbjct: 488 RRSQIIKEELTEID----PEELIRREDTLIMLTQDGYVKRV---SDDTFKLQNRGGKGII 540 Query: 549 ------DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL--LIDLNHNQ 600 DSLK + A++ D +L+ S GK Y L A N+ + H + + LI ++ + Sbjct: 541 GLANIEDSLKKIISANSIDSLLIFSNFGKVYKLRAYNIETYSRHARGLPIINLIAIDKTE 600 Query: 601 DIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR---------KGKTFLKVSSEEKMK 651 I T D + +S++ N F V + +I T+ GK +++ +++ Sbjct: 601 SIQTIIAVDES-----ISTEDNLFFVTKKGLIKKTKISEFNQIRQTGKVAIELKDNDELV 655 Query: 652 LVVKVTGDHVAVVGEN-RKLLIFSIDQIPEMSR 683 V+ G ++G N K++ F+ +I M+R Sbjct: 656 SVIITKGYDDVIIGNNIGKVIRFNEKEIRPMTR 688 >gi|302391739|ref|YP_003827559.1| DNA gyrase, A subunit [Acetohalobium arabaticum DSM 5501] gi|302203816|gb|ADL12494.1| DNA gyrase, A subunit [Acetohalobium arabaticum DSM 5501] Length = 795 Score = 416 bits (1070), Expect = e-114, Method: Compositional matrix adjust. Identities = 263/747 (35%), Positives = 426/747 (57%), Gaps = 46/747 (6%) Query: 12 LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71 ++E+ + +V + ++E YL Y+LS I RA+PD+RDG KPVHRRI++A ++GL Sbjct: 1 MIEQEITSVPIEEKMKESYLNYSLSVIISRALPDVRDGLKPVHRRILYATKKLGLIPNKP 60 Query: 72 FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131 KKSARIVGEV+GK HPHGD +VYD++VR+AQ F QRY LI G GNFG+IDGDSAAA RY Sbjct: 61 HKKSARIVGEVLGKYHPHGDAAVYDAMVRMAQYFSQRYKLIDGHGNFGSIDGDSAAAMRY 120 Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191 TEAR+ ++E +L ++++ ++F D ++ EP V PS+ PNLL NG+SGIAVGM+T I Sbjct: 121 TEARLAPLSEELLADIEKETINFVDNFDGSLQEPTVLPSRVPNLLVNGSSGIAVGMSTDI 180 Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251 P HN++E+ A + L+++ +++IE L+EYI GPDFPTGG I+ + E I ++YR G+G Sbjct: 181 PPHNLKEVISALIQLLEDQDLTIEDLMEYIPGPDFPTGGKIIGNDE-IKKAYRTGKGRIT 239 Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VR 310 +R + +E+ R IV+TEIPYQ+ K++LIE+IA I ++ + ++RDES +D +R Sbjct: 240 LRGKTKIEKRSRNCERIVITEIPYQLNKAKLIEEIANTIKKGKVDNVTNVRDESDQDGLR 299 Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370 IV+ K+++ + ++++ ++ + ++T +NM L + + P+VM L IL+ +L RRE Sbjct: 300 IVIELKSKA-NTEIILNRLYKYTSLQTTQRINMLAL-VDQQPEVMDLKTILQHFLDFRRE 357 Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQ 427 V+ RR+ F +Q R IL GL A N+D++I+IIRN KP K + + ++++ Q Sbjct: 358 VVTRRTEFELQKSKDRQHILLGLKEAIDNLDKVISIIRNSQKPSTAKKNLQDKLNVSKKQ 417 Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487 AIL+++L+ L LE +I EL L + E ++S+LN + + I E+ E+KE + Sbjct: 418 AAAILDMKLQRLVSLERKKITEELTELKEKIEALNSILNEKEVMDDLIKKELIEIKEEY- 476 Query: 488 KSTDLGRRRTTFCEVSRADKATLQQA-MIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546 G R T ++ KA L ++ +I+ E I + S +++ + D+ + Sbjct: 477 -----GDERKTEI-ITDESKAELDESDLIKNEDIVLSFSYNKYLK----RTTDIENIRAG 526 Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDIVT 604 +GD + + T D +L + G+ + L + G G+ + + L +++IV Sbjct: 527 KGDYITDIMTGTTRDDLLFFTNTGQVHILKTHKIPEHHGLSTGDPLSDYLKLPLDEEIVD 586 Query: 605 AFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS-------EEKMKLVVKVT 657 + K ++ I E +I T + VSS EE + KVT Sbjct: 587 ILILTDETKEKYIT------IATEEGLIKKTVGKEYETTVSSIKAINLNEEDEVIGAKVT 640 Query: 658 -GDHVAVVG-ENRKLLIFSIDQIPEMSRG----KGVRLQSYKDGGISDVICFKICEGLTW 711 G ++G + + + FS D I + R KG+ L VI F + + Sbjct: 641 DGQQNLLLGTKGGQTIHFSEDSISDTGRNTKGSKGIDLAEN-----DKVISFNLTANSNY 695 Query: 712 IDSAGRSYNRSENDLLGW-LGKRGGVG 737 + +A + D+ + + R G G Sbjct: 696 VITATADGRATRTDINAYQIQNRNGKG 722 >gi|188495176|ref|ZP_03002446.1| DNA gyrase, A subunit [Escherichia coli 53638] gi|194436036|ref|ZP_03068138.1| DNA gyrase, A subunit [Escherichia coli 101-1] gi|253772846|ref|YP_003035677.1| DNA gyrase subunit A [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254162242|ref|YP_003045350.1| DNA gyrase subunit A [Escherichia coli B str. REL606] gi|300931424|ref|ZP_07146753.1| DNA gyrase, A subunit [Escherichia coli MS 187-1] gi|188490375|gb|EDU65478.1| DNA gyrase, A subunit [Escherichia coli 53638] gi|194424764|gb|EDX40749.1| DNA gyrase, A subunit [Escherichia coli 101-1] gi|242377866|emb|CAQ32633.1| DNA gyrase, subunit A, subunit of DNA gyrase [Escherichia coli BL21(DE3)] gi|253323890|gb|ACT28492.1| DNA gyrase, A subunit [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253974143|gb|ACT39814.1| DNA gyrase subunit A [Escherichia coli B str. REL606] gi|253978310|gb|ACT43980.1| DNA gyrase subunit A [Escherichia coli BL21(DE3)] gi|300460794|gb|EFK24287.1| DNA gyrase, A subunit [Escherichia coli MS 187-1] gi|323961537|gb|EGB57145.1| hypothetical protein ERGG_01998 [Escherichia coli H489] gi|323973067|gb|EGB68261.1| hypothetical protein ERHG_00995 [Escherichia coli TA007] Length = 875 Score = 416 bits (1070), Expect = e-114, Method: Compositional matrix adjust. Identities = 256/659 (38%), Positives = 381/659 (57%), Gaps = 65/659 (9%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + V++ L+ YL YA+S I RA+PD+RDG KPVHRR+++AM+ +G D+ A+KKSA Sbjct: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG+IDGDSAAA RYTE R+ Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 ++A ++ ++++ VDF D Y+ + P V P+K PNLL NG+SGIAVGMAT+IP HN+ Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ LA ID+ +ISIE L+E+I GPDFPT II R I E+YR GRG +RAR Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAII-NGRRGIEEAYRTGRGKVYIRARA 246 Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314 VE + G I+V EIPYQV K+RLIEKIAEL+ KR+ + +RDES +D +RIV+ Sbjct: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K ++ ++++ +++ + ++ F +NM L G+ P++M L I+ ++ HRREV+ R Sbjct: 307 VKRDAVG-EVVLNNLYSQTQLQVSFGINMVALHHGQ-PKIMNLKDIIAAFVRHRREVVTR 364 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----------- 420 R+ F ++ R IL+ L +A NID II +IR+ P K +V+ Sbjct: 365 RTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAML 424 Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457 + LTE Q AIL+LRL+ L LE ++ E LL + Sbjct: 425 ERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQ 484 Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517 ++ +L S + I E+ V+E F G +R T + AD + +I + Sbjct: 485 IAELLRILGSADRLMEVIREELELVREQF------GDKRRTEITANSADINL--EDLITQ 536 Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569 E + V +S++G+++ + + SA KE D + L A+T D IL S+ Sbjct: 537 EDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSR 596 Query: 570 GKAYTLPAGNLLSG-RG-HGEAIQLLIDLNHNQDIVTAFV----YDSTCKLLVVSSKGN 622 G+ Y++ L RG G I L+ L ++ I TA + ++ K+ + ++ G Sbjct: 597 GRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERI-TAILPVTEFEEGVKVFMATANGT 654 >gi|332074830|gb|EGI85302.1| DNA gyrase, A subunit [Streptococcus pneumoniae GA41301] Length = 822 Score = 416 bits (1070), Expect = e-114, Method: Compositional matrix adjust. Identities = 257/706 (36%), Positives = 413/706 (58%), Gaps = 38/706 (5%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 ++N+ V+L ++ ++ YA+S I RA+PD+RDG KPVHRRI++ M+E+G+ K Sbjct: 3 DKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHK 62 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSARI G+V+GK HPHGD S+Y+++VR+AQ + RY L+ G GNFG++DGDSAAA RYTE Sbjct: 63 KSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYTE 122 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 ARM+++A +L+ ++++ VDF D Y+ + EP+V P++FPNLL NG +GIAVGMAT+IP Sbjct: 123 ARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIPP 182 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E +A ++DNPE++ + L+E + GPDFPTG +++ + I ++Y G+G +R Sbjct: 183 HNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVM-GKSGIHKAYETGKGSIVLR 241 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312 +R +E G IVVTE PY V K+++ E I L+ KRI + +RDES E VR V Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 + K R ++++ ++F ++ M+T F NM + G +P+++ L IL ++ H++EV+ Sbjct: 302 IEVK-RDASANVILNNLFKMTQMQTNFGFNMLAIQNG-IPKILSLRQILDAYIEHQKEVV 359 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVD 429 RR+ F + + R IL+GLLIA +IDE+I IIR + + + ++S+F L E Q Sbjct: 360 VRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSKFKLYERQSQ 419 Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489 AIL++RLR L LE +I+SE D+LLA + +L ++ I E+ EVK FS Sbjct: 420 AILDMRLRRLTGLERDKIQSEYDDLLALIADLADILAKPERVSQIIKDELDEVKRKFSD- 478 Query: 490 TDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSL--------KSHSVDL 540 +RRT E+ +L+ + +IE+ + + +SNRG+I+ L K + Sbjct: 479 ----KRRT---ELMIGQVLSLEDEDLIEESDVLITLSNRGYIKRLDQDEFTAQKRGGRGV 531 Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS-GR-GHGEAIQLLIDLNH 598 K+ D ++ + T D +L + G+ Y L + GR G + L+ L+ Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDE 591 Query: 599 NQDIVTAFVYDS----TCKLLVVSSKGNAFIVEESEI--IANTRK-GKTFLKVSSEEKMK 651 ++ I T +S L + G IV+ + + AN R+ G L + E+++ Sbjct: 592 DESIQTVINVESDRSDDAYLFFTTRHG---IVKRTSVKEFANIRQNGLKALNLKDEDELI 648 Query: 652 LVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSR-GKGVRLQSYKDG 695 V+ GD ++G + F+ + MSR GV+ + ++G Sbjct: 649 NVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMSRIATGVKGVNLREG 694 >gi|145298929|ref|YP_001141770.1| DNA gyrase [Aeromonas salmonicida subsp. salmonicida A449] gi|142851701|gb|ABO90022.1| DNA gyrase [Aeromonas salmonicida subsp. salmonicida A449] Length = 934 Score = 416 bits (1070), Expect = e-114, Method: Compositional matrix adjust. Identities = 250/606 (41%), Positives = 359/606 (59%), Gaps = 58/606 (9%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + +++ L+ YL YA+S I RA+PD+RDG KPVHRR++ AM+E+G D+ +KKSA Sbjct: 8 ITPINIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELGNDWNKPYKKSA 67 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD +VYD++VRLAQ F RY L+ GQGNFG++DGDSAAA RYTE RM Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRLAQDFSMRYMLVDGQGNFGSVDGDSAAAMRYTEVRM 127 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 +++ +L +D++ VD+ Y+ + P V P+K PNLL NG+SGIAVGMAT+IP HN+ Sbjct: 128 ARISHELLADLDKETVDWVPNYDGTEMIPAVMPTKVPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 EI LALI+N ++I++L+ YI GPDFPTG II R IV++YR GRG VRA+ Sbjct: 188 TEIVNGCLALIENGNLTIDELMTYITGPDFPTGAII-NGRAGIVQAYRTGRGSVYVRAKA 246 Query: 257 CVEEVGRGSW-CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314 VE + S I+V E+PYQV K+RLIEKIAEL+ K++ + +RDES +D +RIV+ Sbjct: 247 EVEVDDKTSRETIIVHELPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDGMRIVIE 306 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K R ++++ +++ + ++T F +NM L + P+VM L IL +L HRREV+ R Sbjct: 307 IK-RGESGEIVLNNLYKHTQLQTTFGINMVALDNNQ-PKVMNLKDILDAFLLHRREVVTR 364 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----------- 420 R+ F ++ R IL+GL +A NID II +IR+ D P K +V+R Sbjct: 365 RTVFELRKARDRAHILEGLAVALANIDPIIELIRHSDTPADAKAKLVARGWELGNVAAML 424 Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457 + LTE Q AIL+LRL L LE +I E +LL Sbjct: 425 EKAGDDAARPEWLEPEFGIREGQYFLTEQQAQAILDLRLHKLTGLEHGKILEEYQSLLDL 484 Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517 ++ +L S ++ I E+ V+E + RRT E+S + + +I Sbjct: 485 IAELLFILASPERLMEVIRDELLAVREQYGDE-----RRT---EISASSAEINIEDLITP 536 Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569 E + V +S++G+++ + + SA KE D ++ L A+T D IL ST Sbjct: 537 EDVVVTLSHQGYVKYQPITDYEAQRRGGRGKSATRIKEEDFVERLLVANTHDTILCFSTR 596 Query: 570 GKAYTL 575 GK Y L Sbjct: 597 GKVYWL 602 >gi|9230559|gb|AAF85900.1| DNA gyrase A subunit [Streptococcus pneumoniae] Length = 822 Score = 416 bits (1070), Expect = e-114, Method: Compositional matrix adjust. Identities = 257/706 (36%), Positives = 415/706 (58%), Gaps = 38/706 (5%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 ++N+ V+L ++ ++ YA+S I RA+PD+RDG KPVHRRI++ M+E+G+ K Sbjct: 3 DKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHK 62 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSARI G+V+GK HPHGD S+Y+++VR+AQ + RY L+ G GNFG++DGDSAAA RYTE Sbjct: 63 KSARITGDVMGKYHPHGDFSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYTE 122 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 ARM+++A +L+ ++++ VDF D Y+ + EP+V P++FPNLL NG +GIAVGMAT+IP Sbjct: 123 ARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIPP 182 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E +A ++DNPE++ + L+E + GPDFPTG +++ + I ++Y G+G +R Sbjct: 183 HNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVM-GKSGIHKAYETGKGSIVLR 241 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312 +R +E G IVVTE PY V K+++ E I L+ KRI + +RDES E VR V Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 + K R ++++ ++F ++ M+T F NM + G +P+++ L IL ++ H++EV+ Sbjct: 302 IEVK-RDASANVILNNLFKMTQMQTNFGFNMLAIQNG-IPKILSLRQILDAYIEHQKEVV 359 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVD 429 RR+ F + + R IL+GLLIA +IDE+I IIR + + + ++S+F L+E Q Sbjct: 360 VRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSKFKLSERQSQ 419 Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489 AIL++RLR L LE +I+SE D+LLA + ++L ++ I E+ EVK FS Sbjct: 420 AILDMRLRRLTGLERDKIQSEYDDLLALIADLANILAKPERVSQIIKDELDEVKRKFSD- 478 Query: 490 TDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSL--------KSHSVDL 540 +RRT E+ +L+ + +IE+ + + +SNRG+I+ L K + Sbjct: 479 ----KRRT---ELMVGQILSLEDEDLIEESDVLITLSNRGYIKRLDQDEFTAQKRGGRGV 531 Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS-GR-GHGEAIQLLIDLNH 598 K+ D ++ + T D +L + G+ Y L + GR G + L+ L+ Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDE 591 Query: 599 NQDIVTAFVYDS----TCKLLVVSSKGNAFIVEESEI--IANTRK-GKTFLKVSSEEKMK 651 ++ I T +S L + G IV+ + + AN R+ G L + E+++ Sbjct: 592 DESIQTVINVESDRSDDAYLFFTTRHG---IVKRTSVKEFANIRQNGLKALNLKDEDELI 648 Query: 652 LVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSR-GKGVRLQSYKDG 695 V+ GD ++G + F+ + MSR GV+ + ++G Sbjct: 649 NVLLTEGDMDIIIGTKFGYAVRFNQSAVRGMSRIATGVKGVNLREG 694 >gi|300926335|ref|ZP_07142135.1| DNA gyrase, A subunit [Escherichia coli MS 182-1] gi|300417612|gb|EFK00923.1| DNA gyrase, A subunit [Escherichia coli MS 182-1] Length = 875 Score = 416 bits (1070), Expect = e-114, Method: Compositional matrix adjust. Identities = 256/659 (38%), Positives = 381/659 (57%), Gaps = 65/659 (9%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + V++ L+ YL YA+S I RA+PD+RDG KPVHRR+++AM+ +G D+ A+KKSA Sbjct: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG+IDGDSAAA RYTE R+ Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 ++A ++ ++++ VDF D Y+ + P V P+K PNLL NG+SGIAVGMAT+IP HN+ Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ LA ID+ +ISIE L+E+I GPDFPT II R I E+YR GRG +RAR Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAII-NGRRGIEEAYRTGRGKVYIRARA 246 Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314 VE + G I+V EIPYQV K+RLIEKIAEL+ KR+ + +RDES +D +RIV+ Sbjct: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K ++ ++++ +++ + ++ F +NM L G+ P++M L I+ ++ HRREV+ R Sbjct: 307 VKRDAVG-EVVLNNLYSQTQLQVSFGINMVALHHGQ-PKIMNLKDIIAAFVRHRREVVTR 364 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----------- 420 R+ F ++ R IL+ L +A NID II +IR+ P K +V+ Sbjct: 365 RTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAML 424 Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457 + LTE Q AIL+LRL+ L LE ++ E LL + Sbjct: 425 ERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQ 484 Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517 ++ +L S + I E+ V+E F G +R T + AD + +I + Sbjct: 485 IAELLRILGSADRLMEVIREELELVREQF------GDKRRTEITANSADINL--EDLITQ 536 Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569 E + V +S++G+++ + + SA KE D + L A+T D IL S+ Sbjct: 537 EDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSR 596 Query: 570 GKAYTLPAGNLLSG-RG-HGEAIQLLIDLNHNQDIVTAFV----YDSTCKLLVVSSKGN 622 G+ Y++ L RG G I L+ L ++ I TA + ++ K+ + ++ G Sbjct: 597 GRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERI-TAILPVTEFEEGVKVFMATANGT 654 >gi|16130166|ref|NP_416734.1| DNA gyrase (type II topoisomerase), subunit A [Escherichia coli str. K-12 substr. MG1655] gi|24113610|ref|NP_708120.1| DNA gyrase subunit A [Shigella flexneri 2a str. 301] gi|30063664|ref|NP_837835.1| DNA gyrase subunit A [Shigella flexneri 2a str. 2457T] gi|82544525|ref|YP_408472.1| DNA gyrase subunit A [Shigella boydii Sb227] gi|89109048|ref|AP_002828.1| DNA gyrase (type II topoisomerase), subunit A [Escherichia coli str. K-12 substr. W3110] gi|110642439|ref|YP_670169.1| DNA gyrase subunit A [Escherichia coli 536] gi|157154912|ref|YP_001463578.1| DNA gyrase subunit A [Escherichia coli E24377A] gi|170081849|ref|YP_001731169.1| DNA gyrase (type II topoisomerase), subunit A [Escherichia coli str. K-12 substr. DH10B] gi|187732271|ref|YP_001881059.1| DNA gyrase subunit A [Shigella boydii CDC 3083-94] gi|191166476|ref|ZP_03028306.1| DNA gyrase, A subunit [Escherichia coli B7A] gi|191169998|ref|ZP_03031552.1| DNA gyrase, A subunit [Escherichia coli F11] gi|193062390|ref|ZP_03043485.1| DNA gyrase, A subunit [Escherichia coli E22] gi|193068181|ref|ZP_03049145.1| DNA gyrase, A subunit [Escherichia coli E110019] gi|209919683|ref|YP_002293767.1| DNA gyrase subunit A [Escherichia coli SE11] gi|218554794|ref|YP_002387707.1| DNA gyrase subunit A [Escherichia coli IAI1] gi|218695837|ref|YP_002403504.1| DNA gyrase subunit A [Escherichia coli 55989] gi|238901404|ref|YP_002927200.1| DNA gyrase (type II topoisomerase), subunit A [Escherichia coli BW2952] gi|256017607|ref|ZP_05431472.1| DNA gyrase subunit A [Shigella sp. D9] gi|260844827|ref|YP_003222605.1| DNA gyrase subunit A [Escherichia coli O103:H2 str. 12009] gi|260856281|ref|YP_003230172.1| DNA gyrase subunit A [Escherichia coli O26:H11 str. 11368] gi|260868961|ref|YP_003235363.1| DNA gyrase subunit A [Escherichia coli O111:H- str. 11128] gi|293446574|ref|ZP_06662996.1| A subunit [Escherichia coli B088] gi|300822680|ref|ZP_07102818.1| DNA gyrase, A subunit [Escherichia coli MS 119-7] gi|300918607|ref|ZP_07135195.1| DNA gyrase, A subunit [Escherichia coli MS 115-1] gi|300981257|ref|ZP_07175434.1| DNA gyrase, A subunit [Escherichia coli MS 200-1] gi|301024225|ref|ZP_07187922.1| DNA gyrase, A subunit [Escherichia coli MS 196-1] gi|301328721|ref|ZP_07221774.1| DNA gyrase, A subunit [Escherichia coli MS 78-1] gi|301647679|ref|ZP_07247473.1| DNA gyrase, A subunit [Escherichia coli MS 146-1] gi|307138889|ref|ZP_07498245.1| DNA gyrase subunit A [Escherichia coli H736] gi|307311202|ref|ZP_07590846.1| DNA gyrase, A subunit [Escherichia coli W] gi|312973514|ref|ZP_07787686.1| DNA gyrase, A subunit [Escherichia coli 1827-70] gi|331642860|ref|ZP_08343995.1| DNA gyrase, A subunit [Escherichia coli H736] gi|331663736|ref|ZP_08364646.1| DNA gyrase, A subunit [Escherichia coli TA143] gi|332278618|ref|ZP_08391031.1| DNA gyrase subunit A [Shigella sp. D9] gi|84028817|sp|P0AES4|GYRA_ECOLI RecName: Full=DNA gyrase subunit A gi|84028818|sp|P0AES5|GYRA_SHIFL RecName: Full=DNA gyrase subunit A gi|41634|emb|CAA29919.1| unnamed protein product [Escherichia coli] gi|41636|emb|CAA29676.1| unnamed protein product [Escherichia coli] gi|1788562|gb|AAC75291.1| DNA gyrase (type II topoisomerase), subunit A [Escherichia coli str. K-12 substr. MG1655] gi|1799575|dbj|BAA16048.1| DNA gyrase (type II topoisomerase), subunit A [Escherichia coli str. K12 substr. W3110] gi|24052667|gb|AAN43827.1| DNA gyrase, subunit A, type II topoisomerase [Shigella flexneri 2a str. 301] gi|30041919|gb|AAP17645.1| DNA gyrase, subunit A, type II topoisomerase [Shigella flexneri 2a str. 2457T] gi|81245936|gb|ABB66644.1| DNA gyrase, subunit A [Shigella boydii Sb227] gi|110344031|gb|ABG70268.1| DNA gyrase subunit A [Escherichia coli 536] gi|157076942|gb|ABV16650.1| DNA gyrase, A subunit [Escherichia coli E24377A] gi|169889684|gb|ACB03391.1| DNA gyrase (type II topoisomerase), subunit A [Escherichia coli str. K-12 substr. DH10B] gi|187429263|gb|ACD08537.1| DNA gyrase, A subunit [Shigella boydii CDC 3083-94] gi|190903436|gb|EDV63155.1| DNA gyrase, A subunit [Escherichia coli B7A] gi|190909514|gb|EDV69099.1| DNA gyrase, A subunit [Escherichia coli F11] gi|192932056|gb|EDV84655.1| DNA gyrase, A subunit [Escherichia coli E22] gi|192958460|gb|EDV88899.1| DNA gyrase, A subunit [Escherichia coli E110019] gi|209912942|dbj|BAG78016.1| DNA gyrase subunit A [Escherichia coli SE11] gi|218352569|emb|CAU98348.1| DNA gyrase (type II topoisomerase), subunit A [Escherichia coli 55989] gi|218361562|emb|CAQ99153.1| DNA gyrase (type II topoisomerase), subunit A [Escherichia coli IAI1] gi|238860817|gb|ACR62815.1| DNA gyrase (type II topoisomerase), subunit A [Escherichia coli BW2952] gi|257754930|dbj|BAI26432.1| DNA gyrase subunit A [Escherichia coli O26:H11 str. 11368] gi|257759974|dbj|BAI31471.1| DNA gyrase subunit A [Escherichia coli O103:H2 str. 12009] gi|257765317|dbj|BAI36812.1| DNA gyrase subunit A [Escherichia coli O111:H- str. 11128] gi|291323404|gb|EFE62832.1| A subunit [Escherichia coli B088] gi|299880518|gb|EFI88729.1| DNA gyrase, A subunit [Escherichia coli MS 196-1] gi|300307621|gb|EFJ62141.1| DNA gyrase, A subunit [Escherichia coli MS 200-1] gi|300414259|gb|EFJ97569.1| DNA gyrase, A subunit [Escherichia coli MS 115-1] gi|300524880|gb|EFK45949.1| DNA gyrase, A subunit [Escherichia coli MS 119-7] gi|300844869|gb|EFK72629.1| DNA gyrase, A subunit [Escherichia coli MS 78-1] gi|301074209|gb|EFK89015.1| DNA gyrase, A subunit [Escherichia coli MS 146-1] gi|306908708|gb|EFN39205.1| DNA gyrase, A subunit [Escherichia coli W] gi|310332109|gb|EFP99344.1| DNA gyrase, A subunit [Escherichia coli 1827-70] gi|313651346|gb|EFS15744.1| DNA gyrase, A subunit [Shigella flexneri 2a str. 2457T] gi|315061531|gb|ADT75858.1| DNA gyrase (type II topoisomerase), subunit A [Escherichia coli W] gi|315615492|gb|EFU96124.1| DNA gyrase, A subunit [Escherichia coli 3431] gi|320177201|gb|EFW52210.1| DNA gyrase subunit A [Shigella dysenteriae CDC 74-1112] gi|320199825|gb|EFW74414.1| DNA gyrase subunit A [Escherichia coli EC4100B] gi|323156508|gb|EFZ42662.1| DNA gyrase, A subunit [Escherichia coli EPECa14] gi|323171909|gb|EFZ57553.1| DNA gyrase, A subunit [Escherichia coli LT-68] gi|323176842|gb|EFZ62432.1| DNA gyrase, A subunit [Escherichia coli 1180] gi|323184151|gb|EFZ69528.1| DNA gyrase, A subunit [Escherichia coli 1357] gi|323377888|gb|ADX50156.1| DNA gyrase, A subunit [Escherichia coli KO11] gi|323936845|gb|EGB33130.1| hypothetical protein ERCG_02100 [Escherichia coli E1520] gi|323941075|gb|EGB37262.1| hypothetical protein ERDG_02479 [Escherichia coli E482] gi|323945040|gb|EGB41105.1| hypothetical protein EREG_03495 [Escherichia coli H120] gi|323967672|gb|EGB63084.1| hypothetical protein ERJG_00701 [Escherichia coli M863] gi|324013124|gb|EGB82343.1| DNA gyrase, A subunit [Escherichia coli MS 60-1] gi|324117886|gb|EGC11785.1| hypothetical protein ERBG_02182 [Escherichia coli E1167] gi|327252499|gb|EGE64158.1| DNA gyrase, A subunit [Escherichia coli STEC_7v] gi|331039658|gb|EGI11878.1| DNA gyrase, A subunit [Escherichia coli H736] gi|331059535|gb|EGI31512.1| DNA gyrase, A subunit [Escherichia coli TA143] gi|332094134|gb|EGI99186.1| DNA gyrase, A subunit [Shigella boydii 3594-74] gi|332100970|gb|EGJ04316.1| DNA gyrase subunit A [Shigella sp. D9] gi|332754876|gb|EGJ85241.1| DNA gyrase, A subunit [Shigella flexneri 4343-70] gi|332756160|gb|EGJ86511.1| DNA gyrase, A subunit [Shigella flexneri 2747-71] gi|332766049|gb|EGJ96259.1| DNA gyrase, A subunit [Shigella flexneri 2930-71] gi|333001373|gb|EGK20941.1| DNA gyrase, A subunit [Shigella flexneri VA-6] gi|333002596|gb|EGK22156.1| DNA gyrase, A subunit [Shigella flexneri K-272] gi|333016644|gb|EGK35973.1| DNA gyrase, A subunit [Shigella flexneri K-304] gi|333016790|gb|EGK36117.1| DNA gyrase, A subunit [Shigella flexneri K-227] Length = 875 Score = 416 bits (1070), Expect = e-114, Method: Compositional matrix adjust. Identities = 256/659 (38%), Positives = 381/659 (57%), Gaps = 65/659 (9%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + V++ L+ YL YA+S I RA+PD+RDG KPVHRR+++AM+ +G D+ A+KKSA Sbjct: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG+IDGDSAAA RYTE R+ Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 ++A ++ ++++ VDF D Y+ + P V P+K PNLL NG+SGIAVGMAT+IP HN+ Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ LA ID+ +ISIE L+E+I GPDFPT II R I E+YR GRG +RAR Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAII-NGRRGIEEAYRTGRGKVYIRARA 246 Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314 VE + G I+V EIPYQV K+RLIEKIAEL+ KR+ + +RDES +D +RIV+ Sbjct: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K ++ ++++ +++ + ++ F +NM L G+ P++M L I+ ++ HRREV+ R Sbjct: 307 VKRDAVG-EVVLNNLYSQTQLQVSFGINMVALHHGQ-PKIMNLKDIIAAFVRHRREVVTR 364 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----------- 420 R+ F ++ R IL+ L +A NID II +IR+ P K +V+ Sbjct: 365 RTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAML 424 Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457 + LTE Q AIL+LRL+ L LE ++ E LL + Sbjct: 425 ERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQ 484 Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517 ++ +L S + I E+ V+E F G +R T + AD + +I + Sbjct: 485 IAELLRILGSADRLMEVIREELELVREQF------GDKRRTEITANSADINL--EDLITQ 536 Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569 E + V +S++G+++ + + SA KE D + L A+T D IL S+ Sbjct: 537 EDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSR 596 Query: 570 GKAYTLPAGNLLSG-RG-HGEAIQLLIDLNHNQDIVTAFV----YDSTCKLLVVSSKGN 622 G+ Y++ L RG G I L+ L ++ I TA + ++ K+ + ++ G Sbjct: 597 GRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERI-TAILPVTEFEEGVKVFMATANGT 654 >gi|300897701|ref|ZP_07116099.1| DNA gyrase, A subunit [Escherichia coli MS 198-1] gi|300358579|gb|EFJ74449.1| DNA gyrase, A subunit [Escherichia coli MS 198-1] Length = 875 Score = 416 bits (1070), Expect = e-114, Method: Compositional matrix adjust. Identities = 256/659 (38%), Positives = 381/659 (57%), Gaps = 65/659 (9%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + V++ L+ YL YA+S I RA+PD+RDG KPVHRR+++AM+ +G D+ A+KKSA Sbjct: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG+IDGDSAAA RYTE R+ Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 ++A ++ ++++ VDF D Y+ + P V P+K PNLL NG+SGIAVGMAT+IP HN+ Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ LA ID+ +ISIE L+E+I GPDFPT II R I E+YR GRG +RAR Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAII-NGRRGIEEAYRTGRGKVYIRARA 246 Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314 VE + G I+V EIPYQV K+RLIEKIAEL+ KR+ + +RDES +D +RIV+ Sbjct: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K ++ ++++ +++ + ++ F +NM L G+ P++M L I+ ++ HRREV+ R Sbjct: 307 VKRDAVG-EVVLNNLYSQTQLQVSFGINMVALHHGQ-PKIMNLKDIIAAFVRHRREVVTR 364 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----------- 420 R+ F ++ R IL+ L +A NID II +IR+ P K +V+ Sbjct: 365 RTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAML 424 Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457 + LTE Q AIL+LRL+ L LE ++ E LL + Sbjct: 425 ERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQ 484 Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517 ++ +L S + I E+ V+E F G +R T + AD + +I + Sbjct: 485 IAELLRILGSADRLMEVIREELELVREQF------GDKRRTEITANSADINL--EDLITQ 536 Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569 E + V +S++G+++ + + SA KE D + L A+T D IL S+ Sbjct: 537 EDVVVTLSHQGYVKYQPLSEYEAQRRGGEGKSAARIKEEDFIDRLLVANTHDHILCFSSR 596 Query: 570 GKAYTLPAGNLLSG-RG-HGEAIQLLIDLNHNQDIVTAFV----YDSTCKLLVVSSKGN 622 G+ Y++ L RG G I L+ L ++ I TA + ++ K+ + ++ G Sbjct: 597 GRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERI-TAILPVTEFEEGVKVFMATANGT 654 >gi|154174125|ref|YP_001408750.1| DNA gyrase subunit A [Campylobacter curvus 525.92] gi|112802642|gb|EAT99986.1| DNA gyrase, A subunit [Campylobacter curvus 525.92] Length = 873 Score = 416 bits (1070), Expect = e-114, Method: Compositional matrix adjust. Identities = 248/616 (40%), Positives = 382/616 (62%), Gaps = 36/616 (5%) Query: 4 DNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63 +NI N N +++K V + +++ YL Y++S I RA+PD RDG KPVHRRI++AM++ Sbjct: 3 ENILNLN----QDIKVVDIEDSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMND 58 Query: 64 MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123 +G+ + +KKSARIVG+VIGK HPHGD +VYD+LVR+AQ F RYP + GQGNFG+IDG Sbjct: 59 LGVGSRSPYKKSARIVGDVIGKYHPHGDTAVYDALVRMAQSFSMRYPTVDGQGNFGSIDG 118 Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183 DSAAA RYTEARMT +AE +L+ +D+D VDF Y++ EP V PS+ PNLL NG+SGI Sbjct: 119 DSAAAMRYTEARMTILAEELLRDIDKDTVDFVPNYDDSTLEPDVLPSRVPNLLLNGSSGI 178 Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243 AVGMAT++P H++ E+ + L L+DN S+E++++YI GPDFPTGGII ++ I+E+Y Sbjct: 179 AVGMATNVPPHSLDELIDGLLLLLDNKNASLEEIMQYIKGPDFPTGGIIF-GKKGIMEAY 237 Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303 R GRG +VRA+ +E+ IV+ E+PYQ K+RLIE+IAEL+ K+I + ++RD Sbjct: 238 RTGRGRVKVRAKTHIEK-KPNKDIIVIDELPYQTNKARLIEQIAELVKEKQIEGISEVRD 296 Query: 304 ES-AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362 ES E +R+V+ K ++ D+++ ++F + ME+ F + M + + P++ L +LK Sbjct: 297 ESDREGIRVVIELKRDAM-SDIVLNNLFKSTTMESTFGVIMLAID-NKEPKIFTLIELLK 354 Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDKP--KPVMVS 419 +L HR+ V+ R++ F ++ R IL+GL IA NIDE+I +IR + D P + ++ Sbjct: 355 LFLNHRKTVIIRKTIFDLEKARARAHILEGLKIALDNIDEVIELIRKSADTPSARDGLME 414 Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479 +F L+E Q +AIL++RL L LE ++ +EL LLAE ++D +L S N I E+ Sbjct: 415 KFGLSELQSNAILDMRLSKLTGLEREKLDNELKELLAEISRLDEILKSETLLENLIKDEL 474 Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539 E+K F + E+ + +I E + V I++RG+I+ + S + Sbjct: 475 LEIKSKF--------KVPRLTEIVDDYDDIDIEDLIPNENMVVTITHRGYIKRVPSKQYE 526 Query: 540 LS--------ALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGH 586 A+ + D ++ ++T D ++ ++ G K Y +P G S Sbjct: 527 KQKRGGKGKVAVTTYDDDFIESFFTSNTHDTLMFVTDRGQLYWLKVYKIPEG---SRTAK 583 Query: 587 GEAIQLLIDLNHNQDI 602 G+A+ L+ L + I Sbjct: 584 GKAVVNLVQLQPEEKI 599 >gi|304398195|ref|ZP_07380069.1| DNA gyrase, A subunit [Pantoea sp. aB] gi|304354061|gb|EFM18434.1| DNA gyrase, A subunit [Pantoea sp. aB] Length = 890 Score = 416 bits (1070), Expect = e-114, Method: Compositional matrix adjust. Identities = 254/637 (39%), Positives = 370/637 (58%), Gaps = 60/637 (9%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + V++ L+ YL YA+S I RA+PD+RDG KPVHRR++ AMS +G D+ +KKSA Sbjct: 8 ITPVNIEEELKNSYLGYAMSVIVGRALPDVRDGLKPVHRRVLFAMSVLGNDWNKPYKKSA 67 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG+IDGDSAAA RYTE RM Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRM 127 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 +++A +L ++++ VDF Y+ + P V P+K PNLL NG+SGIAVGMAT+IP HN+ Sbjct: 128 SKIAHDLLADLEKETVDFVPNYDGTEQIPEVLPTKIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 +E+ LA I+N +ISIE+L+E+I GPDFPT II R I E+YR GRG +RAR Sbjct: 188 REVINGCLAYIENEDISIEELMEHIPGPDFPTAAII-NGRRGIEEAYRTGRGKIYIRARG 246 Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314 VE + G I++ E+PYQV K+RLIEKIAEL+ KR+ + +RDES +D +RIV+ Sbjct: 247 EVEADAKTGRETIIIHELPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K ++ ++++ +++ L+ ++T F +NM L G+ P++M L IL ++ HRREV+ R Sbjct: 307 IKRDAVG-EVVLNNLYSLTQLQTSFGINMVALHQGQ-PKIMALKEILDAFVRHRREVVTR 364 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK----------------PVMV 418 R+ F ++ R IL+GL IA NID II +IR P M+ Sbjct: 365 RTIFELRKARDRAHILEGLAIALANIDPIIELIRRAPNPAEAKAGLIAQAWDLGNVSAML 424 Query: 419 SR---------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457 R + LTE Q AIL+LRL+ L LE ++ E LL + Sbjct: 425 ERAGDDAARPEWLDPQYGIRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKGLLEQ 484 Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517 ++ +L+ + I E+ +++ F G R T + AD + +I + Sbjct: 485 IAELLRILSDADRLMEVIREELELMRDQF------GDERRTEITANTADINI--EDLINQ 536 Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569 E + V +S++G+++ + + SA KE D + L A+T D IL S+ Sbjct: 537 EDVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSR 596 Query: 570 GKAYTLPAGNLL-SGRG-HGEAIQLLIDLNHNQDIVT 604 G+ Y + L + RG G I L+ L N+ I Sbjct: 597 GRLYWMKVYQLPEASRGARGRPIVNLLPLEANERITA 633 >gi|187931170|ref|YP_001891154.1| DNA gyrase, A subunit [Francisella tularensis subsp. mediasiatica FSC147] gi|187712079|gb|ACD30376.1| DNA gyrase, A subunit [Francisella tularensis subsp. mediasiatica FSC147] Length = 868 Score = 416 bits (1070), Expect = e-114, Method: Compositional matrix adjust. Identities = 258/736 (35%), Positives = 418/736 (56%), Gaps = 87/736 (11%) Query: 11 TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70 +++ + ++++ L++ YL YA+S I RA+PD+RDG KPVHRR++ AM+E+ + Sbjct: 2 SIITKESSSINIEKELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELSNYYNR 61 Query: 71 AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130 +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG++DGDS AA R Sbjct: 62 PYKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYTLVDGQGNFGSVDGDSPAAMR 121 Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190 YTE RM ++ +L +D++ VDF Y+ + P V P++ PNLL NG+SGIAVGMAT+ Sbjct: 122 YTEIRMEKLTHELLIDIDKETVDFSPNYDNTELVPDVLPTRVPNLLVNGSSGIAVGMATN 181 Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250 IP HN+ E+ +ALIDNP ++IE+L+EYI PDFPTG I + I+E+Y+ GRG Sbjct: 182 IPPHNMTEVINGTIALIDNPNLTIEELIEYIPAPDFPTGSYI-NGTDGILEAYKTGRGRV 240 Query: 251 RVRARWCV-EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED- 308 +RA+ + E+ G I+VTEIPYQV K++L+EKIAEL+ K++ + ++RDES +D Sbjct: 241 IMRAKADIHEDEASGKAQIIVTEIPYQVNKAKLVEKIAELVKDKKVAGISELRDESDKDG 300 Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368 +R+V+ K R P++++ +++ + ++ F +NM LS R P+++ L IL++++ HR Sbjct: 301 IRVVIDLK-RDESPEVVLNTLYAQTQLQCSFGINMVALSDNR-PKLLNLKEILEQFIKHR 358 Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----- 420 +EV+ RR+ F ++ R IL+GLL++ NIDE+I +I+ P K M++R Sbjct: 359 KEVVTRRTIFELRKSKERAHILEGLLLSLANIDEMIELIKASPSPADAKESMLARSWNGS 418 Query: 421 ------------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSE 450 ++LTE Q DAIL LRL L LE+ +I +E Sbjct: 419 MVKSMLEGVDVKMYRKETLASHYGIQVDSSYNLTEEQADAILALRLHRLTGLEQDKIVNE 478 Query: 451 LDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATL 510 L+ + + S+L+ K+ + E+ E+++ + G +R + SR D Sbjct: 479 FKELIDRIKYLISILSDIKELIRVVKDELVEIRDNY------GDQRKSEIIESRLD--LT 530 Query: 511 QQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDR 562 ++ +I +E + V +S G++++ K V SA KE DS+ + A T D Sbjct: 531 REDLIAEEDMVVTLSMDGYVKTQPLSMYNAQKRGGVGKSATKTKEEDSIFKLMLASTHDT 590 Query: 563 ILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV----YDSTCK 613 +L S+ G K Y P + +S G I ++ L ++ I TA + ++ Sbjct: 591 MLCFSSLGRVYWSKVYDFPVASRIS---KGRPINNILPLEKDERI-TAMMPISQFNEGWY 646 Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIF 673 + + + G V+ SE GK + ++ +++ +VA+ N+++++F Sbjct: 647 VFMATKLGRVKKVDLSEFARPRSTGKIAIGLNDGDELS--------YVALTDGNKQIMMF 698 Query: 674 SIDQIPEMSRGKGVRL 689 S GK +R Sbjct: 699 S-------DAGKAIRF 707 >gi|332344011|gb|AEE57345.1| DNA gyrase, A subunit GyrA [Escherichia coli UMNK88] Length = 875 Score = 416 bits (1070), Expect = e-114, Method: Compositional matrix adjust. Identities = 256/659 (38%), Positives = 381/659 (57%), Gaps = 65/659 (9%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + V++ L+ YL YA+S I RA+PD+RDG KPVHRR+++AM+ +G D+ A+KKSA Sbjct: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG+IDGDSAAA RYTE R+ Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 ++A ++ ++++ VDF D Y+ + P V P+K PNLL NG+SGIAVGMAT+IP HN+ Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ LA ID+ +ISIE L+E+I GPDFPT II R I E+YR GRG +RAR Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAII-NGRRGIEEAYRTGRGKVYIRARA 246 Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314 VE + G I+V EIPYQV K+RLIEKIAEL+ KR+ + +RDES +D +RIV+ Sbjct: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K ++ ++++ +++ + ++ F +NM L G+ P++M L I+ ++ HRREV+ R Sbjct: 307 VKRDAVG-EVVLNNLYSQTQLQVSFGINMVALHHGQ-PKIMNLKDIIAAFVRHRREVVTR 364 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----------- 420 R+ F ++ R IL+ L +A NID II +IR+ P K +V+ Sbjct: 365 RTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAML 424 Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457 + LTE Q AIL+LRL+ L LE ++ E LL + Sbjct: 425 ERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQ 484 Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517 ++ +L S + I E+ V+E F G +R T + AD + +I + Sbjct: 485 IAELLRILGSADRLMEVIREELELVREQF------GDKRRTEITANSADINL--EDLITQ 536 Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569 E + V +S++G+++ + + SA KE D + L A+T D IL S+ Sbjct: 537 EDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSR 596 Query: 570 GKAYTLPAGNLLSG-RG-HGEAIQLLIDLNHNQDIVTAFV----YDSTCKLLVVSSKGN 622 G+ Y++ L RG G I L+ L ++ I TA + ++ K+ + ++ G Sbjct: 597 GRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERI-TAILPVTEFEEGVKVFMATAHGT 654 >gi|303326107|ref|ZP_07356550.1| DNA gyrase, A subunit [Desulfovibrio sp. 3_1_syn3] gi|302864023|gb|EFL86954.1| DNA gyrase, A subunit [Desulfovibrio sp. 3_1_syn3] Length = 857 Score = 416 bits (1070), Expect = e-114, Method: Compositional matrix adjust. Identities = 265/759 (34%), Positives = 426/759 (56%), Gaps = 39/759 (5%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 +++ L + YL Y+LS I RAIPD RDG KPVHRRI+ A E+ ++ KKSARIV Sbjct: 12 INIEKELRQSYLEYSLSVIIGRAIPDARDGLKPVHRRIMFAQYELANNYNRPHKKSARIV 71 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGD +VYD+LVRLAQ F R PL+ GQGNFG+IDGDSAAA RYTE RM+++ Sbjct: 72 GDVIGKYHPHGDSAVYDALVRLAQEFSMRDPLVDGQGNFGSIDGDSAAAMRYTEVRMSRL 131 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A+ L +D++ VDFR Y+ EP V P+K PNLL NG+SGIAVGMAT+IP HN+ E+ Sbjct: 132 AQEFLGDLDKNTVDFRPNYDNTLQEPSVMPTKVPNLLLNGSSGIAVGMATNIPPHNLGEL 191 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 C+A L+DNP+ S++ L+EY+ GPDFPT G + + + ++Y GRG ++R R +E Sbjct: 192 CDALQLLLDNPQCSVDDLMEYVKGPDFPTAGFVYAGK-GLYDAYHTGRGTVKMRGRVEIE 250 Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFPKNR 318 E +G +V+ EIP+ + KS L+EKIA L+ ++I + D+RDES + +RIV+ K R Sbjct: 251 ERKKGLQSVVIREIPFGLNKSSLVEKIAALVNDRKIDGIADLRDESDRKGIRIVIDLK-R 309 Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378 + PD+++ +++ + +E+ F +NM + R P ++ L L ++ HRREV+ RR+ + Sbjct: 310 GVIPDIVVNALYKFTPLESSFGINMLAVVDNR-PVLLTLKSALSCFVDHRREVVIRRTRY 368 Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAILNLR 435 ++ + R IL+GL IA +ID+++A+IR N ++ + +++ F L+E Q AIL++R Sbjct: 369 DLEKAEARAHILEGLRIAIDHIDQVVALIRASANPEEARQGLMATFELSEIQARAILDMR 428 Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495 L+ L L+ ++ +E +LL + E S+L++ + +++ EIRE++E F R Sbjct: 429 LQRLTGLQREELLAEYKDLLQKIEFYKSVLDNSEVLRSEMKREIREIRETFVTP-----R 483 Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSVDLSALHFKE 547 RT ++ A + +I + + + +S RG+++ K ++ALH + Sbjct: 484 RTEV--LTEALGGIDIEDLIPDDEVVITLSRRGYMKRTNLENYQQQKRGGKGIAALHTSD 541 Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTA 605 D ++ L + L + G+ + L + G G I L+ L + + T Sbjct: 542 DDYVQEFLTTTNHQYLCLFTNKGRMHQLKVHQVPEGSRTAKGVHINNLLPLEEGEWVTTV 601 Query: 606 FV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKT-FLKVSSEEKMKLVVKVT---G 658 + L V+ +G +V+ S R KT + V E +LVV Sbjct: 602 LALREFAEDKYFLFVTRRG---MVKRSSASLYARCRKTGLMAVGLREDDELVVVRPIRED 658 Query: 659 DHVAVVGENRKLLIFSIDQIPEMSR----GKGVRLQSYKDGGISDVICFKICEGLTWIDS 714 +H+ + + + FS I M R KG+ L+ +D ++ V+ + + + Sbjct: 659 NHIVLATADGFAIRFSCGDIRPMGRVATGVKGIALRR-QDSVVAGVVLKDVDQTTEIMSI 717 Query: 715 AGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753 + Y + L L RGG G + K ++G + + Sbjct: 718 SANGYGKRTRVDLYRLQSRGGKGIINFKVTAKTGPVVGA 756 >gi|73916156|gb|AAZ92946.1| DNA gyrase subunit A [Streptococcus pneumoniae] gi|73916232|gb|AAZ92984.1| DNA gyrase subunit A [Streptococcus pneumoniae] Length = 822 Score = 416 bits (1070), Expect = e-114, Method: Compositional matrix adjust. Identities = 257/706 (36%), Positives = 414/706 (58%), Gaps = 38/706 (5%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 ++N+ V+L ++ ++ YA+S I RA+PD+RDG KPVHRRI++ M+E+G+ K Sbjct: 3 DKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHK 62 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSARI G+V+GK HPHGD S+Y+++VR+AQ + RY L+ G GNFG++DGDSAAA RYTE Sbjct: 63 KSARITGDVMGKYHPHGDFSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYTE 122 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 ARM+++A +L+ ++++ VDF D Y+ + EP+V P++FPNLL NG +GIAVGMAT+IP Sbjct: 123 ARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIPP 182 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E +A ++DNPE++ + L+E + GPDFPTG +++ + I ++Y G+G +R Sbjct: 183 HNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVM-GKSGIHKAYETGKGSIVLR 241 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312 +R +E G IVVTE PY V K+++ E I L+ KRI + +RDES E VR V Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 + K R ++++ ++F ++ M+T F NM + G +P+++ L IL ++ H++EV+ Sbjct: 302 IEVK-RDASANVILNNLFKMTQMQTNFGFNMLAIQNG-IPKILSLRQILDAYIEHQKEVV 359 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVD 429 RR+ F + + R IL+GLLIA +IDE+I IIR + + + ++S+F L+E Q Sbjct: 360 VRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSKFKLSERQSQ 419 Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489 AIL++RLR L LE +I+SE D+LLA + +L ++ I E+ EVK FS Sbjct: 420 AILDMRLRRLTGLERDKIQSEYDDLLALIADLADILAKPERVSQIIKDELDEVKRKFSD- 478 Query: 490 TDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSL--------KSHSVDL 540 +RRT E+ +L+ + +IE+ + + +SNRG+I+ L K + Sbjct: 479 ----KRRT---ELMVGQVLSLEDEDLIEESDVLITLSNRGYIKRLDQDEFTAQKRGGRGV 531 Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS-GR-GHGEAIQLLIDLNH 598 K+ D ++ + T D +L + G+ Y L + GR G + L+ L+ Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDE 591 Query: 599 NQDIVTAFVYDS----TCKLLVVSSKGNAFIVEESEI--IANTRK-GKTFLKVSSEEKMK 651 ++ I T +S L + G IV+ + + AN R+ G L + E+++ Sbjct: 592 DESIQTVINVESDRSDDAYLFFTTRHG---IVKRTSVKEFANIRQNGLKALNLKDEDELI 648 Query: 652 LVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSR-GKGVRLQSYKDG 695 V+ GD ++G + F+ + MSR GV+ + ++G Sbjct: 649 NVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMSRIATGVKGVNLREG 694 >gi|283852479|ref|ZP_06369747.1| DNA gyrase, A subunit [Desulfovibrio sp. FW1012B] gi|283572087|gb|EFC20079.1| DNA gyrase, A subunit [Desulfovibrio sp. FW1012B] Length = 816 Score = 416 bits (1070), Expect = e-114, Method: Compositional matrix adjust. Identities = 265/690 (38%), Positives = 396/690 (57%), Gaps = 39/690 (5%) Query: 26 LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85 L++ YL Y+LS I RAIPD+RDG KPVHRRI+ AM E+ + +KKSAR+VG+VIGK Sbjct: 15 LKKSYLEYSLSVIIGRAIPDVRDGLKPVHRRILFAMHELSNSYNRPYKKSARVVGDVIGK 74 Query: 86 LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145 HPHGDQSVYD+LVR+AQ F R P++ GQGNFG+IDGD+AAA RYTE RM+++A L Sbjct: 75 YHPHGDQSVYDALVRMAQNFSMRDPIVDGQGNFGSIDGDAAAAMRYTEVRMSRLAGEFLA 134 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 ++++ V FR Y+ EP V P+K PNLL NG+SGIAVGMAT+IP HN+ E+C+ L Sbjct: 135 DIEKETVGFRPNYDNSLQEPEVLPTKVPNLLLNGSSGIAVGMATNIPPHNLGELCDGLLH 194 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265 +DNP I++++ I GPDFPTG I R + ++Y GRG ++R R VEE + Sbjct: 195 QLDNPGCDIKEIITLIHGPDFPTGASIYGGR-GLYDAYTTGRGSIKIRGRVEVEERKKDY 253 Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFPKNRSLDPDL 324 +V+ EIPY + KS L+EKIA LI RI + D+RDES + +RIVL K + + D+ Sbjct: 254 QSLVIREIPYALNKSSLVEKIAALINDHRIEGVSDLRDESDRKGIRIVLDLK-KGVIADI 312 Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384 + +++ + +ET F +NM V++ R P + + +L+ +LAHRREV+ RR+++ ++ + Sbjct: 313 ITNALYKYTPLETSFGINMMVVADNR-PATLNIQQMLEHFLAHRREVILRRTAYDLRKSE 371 Query: 385 RRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAILNLRLRSLRK 441 R IL+GL IA NIDE++AIIR N + + ++ RF L+E Q AIL++RL+ L Sbjct: 372 ERAHILEGLRIALDNIDEVVAIIRASKNAVEARENLMERFGLSERQAQAILDMRLQRLTN 431 Query: 442 LEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCE 501 LE ++ E + L+ E + S+LN+ + I EI+E+++ ++ R+T E Sbjct: 432 LERQKLIDEYNELIRLIEYLRSILNNDEVLRGVIRDEIKEIQDRYATP-----RKT---E 483 Query: 502 VSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK-------EGDSLKIA 554 V + +I E + + +S RG+I+ K + K D + Sbjct: 484 VLEDLEGINILDLIPDEDVVITLSRRGYIKRTKIDNYQQQKRGGKGVAGVSTSADDFVQS 543 Query: 555 LHAHTTDRILLLSTD-GKAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFV---Y 608 A T + LLL T+ G+ + LP + G+ G I L+ ++ + + TA + Sbjct: 544 FCATTNHQQLLLFTNLGRMFMLPVHQIPEGQRTAKGAHIANLLPMDKEEFVATALAIREF 603 Query: 609 DSTCKLLVVSSKGNAFIVEES--EIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGE 666 S L V+ +G +V+ S E+ N R E L VK D+ V+ Sbjct: 604 SSERYFLFVTKRG---MVKRSCTELYKNCRSTGIIAVSLKEGDELLTVKEIDDNAEVLLA 660 Query: 667 NRKLLI--FSIDQIPEMSRG----KGVRLQ 690 ++ L F I I RG KG+ L+ Sbjct: 661 TQQGLSNRFHISGIRPTGRGAAGVKGIALK 690 >gi|256257573|ref|ZP_05463109.1| DNA gyrase subunit A [Brucella abortus bv. 9 str. C68] gi|260883853|ref|ZP_05895467.1| conserved hypothetical protein [Brucella abortus bv. 9 str. C68] gi|297248414|ref|ZP_06932132.1| DNA gyrase, A subunit [Brucella abortus bv. 5 str. B3196] gi|260873381|gb|EEX80450.1| conserved hypothetical protein [Brucella abortus bv. 9 str. C68] gi|297175583|gb|EFH34930.1| DNA gyrase, A subunit [Brucella abortus bv. 5 str. B3196] Length = 922 Score = 416 bits (1070), Expect = e-114, Method: Compositional matrix adjust. Identities = 255/679 (37%), Positives = 379/679 (55%), Gaps = 61/679 (8%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 ++ +S+ ++ YL YA+S I RA+PD+RDG KPVHRRI+HAM+EM L + ++KSA Sbjct: 12 IEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAMNEMNLAYNRPYRKSA 71 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 +VGEV+GK HPHGD S+YD+LVR+AQ F R PLI GQGNFG+IDGD AA RYTE R+ Sbjct: 72 GVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLIDGQGNFGSIDGDPPAAMRYTECRL 131 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 +V E +L +D+D V+F+D Y+ + EPVV P++FPNLL NG+ GIAVGMAT+IP HN+ Sbjct: 132 EKVTESLLSDIDKDTVNFQDNYDGREQEPVVLPARFPNLLVNGSGGIAVGMATNIPPHNL 191 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ + +ALIDNP I + +L+E I GPDFPTGGII+ R I +Y GRG +R R Sbjct: 192 GEVIDGCVALIDNPAIELSELMELIPGPDFPTGGIIL-GRNGINSAYTTGRGSVIMRGRA 250 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316 +E + I++TEIPYQV K+ +IEK+AEL+ KRI + D+RDES + V+ Sbjct: 251 TIEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKRIDGISDLRDESDREGYRVVVEL 310 Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376 R D+++ ++ + ++T F NM L+ G+ Q+ LD +L+ ++A R EV+ RR+ Sbjct: 311 KRDAVADVVLNQLYRYTPLQTSFGCNMVALNGGKPEQLTLLD-MLRAFVAFREEVVTRRT 369 Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP----KPVMVSR------------ 420 F + R +L GL IA NIDE+IA+IR P + +M R Sbjct: 370 KFLLNKARDRAHVLVGLAIAVANIDEVIALIRRAPDPATAREQLMERRWPAVDVAPLIRL 429 Query: 421 -------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467 ++L+E Q AIL+LRL+ L L ++ EL+ + E +L S Sbjct: 430 IDDPRHTLNEDNTYNLSEEQARAILDLRLQRLTALGRDEVADELNKIGEEIRDYLDILGS 489 Query: 468 GKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNR 527 + N + E+ V++ F+ RRT E+ + +I +E + V +S+ Sbjct: 490 RLRVMNIVKEEMIAVRDEFATP-----RRT---EIGFGGAEMDDEDLIAREDMVVTVSHA 541 Query: 528 GWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYT 574 G+I R+ + S + KE D + A+T +L S+ G K + Sbjct: 542 GYIKRVPLTTYRAQRRGGKGRSGMATKEEDFVTRLFVANTHTPVLFFSSRGIVYKEKVWR 601 Query: 575 LPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY----DSTCKLLVV--SSKGNAFIVEE 628 LP G S G+A+ ++ L + I T DS L V+ +++G + Sbjct: 602 LPVGTPQS---RGKALINMLPLQQGERITTIMPLPEDEDSWANLDVMFSTTRGTVRRNKL 658 Query: 629 SEIIANTRKGKTFLKVSSE 647 S+ + R GK +K+ E Sbjct: 659 SDFVQVNRNGKIAMKLEDE 677 >gi|166711584|ref|ZP_02242791.1| DNA gyrase subunit A [Xanthomonas oryzae pv. oryzicola BLS256] Length = 898 Score = 416 bits (1070), Expect = e-114, Method: Compositional matrix adjust. Identities = 263/725 (36%), Positives = 385/725 (53%), Gaps = 65/725 (8%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 V+L + + YL YA+S I RA+PD RDG KPVHRR++ AM E+G A+ KSARIV Sbjct: 11 VNLEDEMRKSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHELGAHSNKAYFKSARIV 70 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGDQSVYD+LVR+AQPF RY ++ GQGNFG++DGDSAAA RYTE+RM+++ Sbjct: 71 GDVIGKYHPHGDQSVYDTLVRMAQPFSLRYMMVDGQGNFGSVDGDSAAAMRYTESRMSRL 130 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A ++ +D++ VDF+ Y+E++ EP V P++FP+LL NG++GIAVGMAT+IP HN+ E Sbjct: 131 AHELMADIDKETVDFQPNYDEKEQEPTVMPTRFPSLLVNGSAGIAVGMATNIPPHNLTEA 190 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 A +ALID PE+ +E L+EYI GPDFPT GII I YR GRG R+RA+ VE Sbjct: 191 INACIALIDTPELDVEGLMEYIPGPDFPTAGII-NGTAGIAAGYRTGRGRVRIRAKADVE 249 Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319 G I+VTEIPYQV K+RLIEKIAEL+ K++ + ++RDES +D + R Sbjct: 250 VADNGREAIIVTEIPYQVNKARLIEKIAELVKEKKLEGISELRDESDKDGMRIYIEIKRG 309 Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379 ++++ +++ + ME+ F +NM L GR PQ+M L +L+ ++ HRREV+ RR+ F Sbjct: 310 ESAEVVLNNLYQQTQMESVFGINMVALIDGR-PQLMNLKQMLEAFIRHRREVVTRRTIFE 368 Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSR---------------- 420 ++ R +L+GL +A NIDE+I +I+ P+ M+++ Sbjct: 369 LRKARARAHVLEGLTVALANIDEMIELIKTSANPQEARERMLAKTWQPGLVGALLGAAGA 428 Query: 421 ------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKID 462 + L+E Q IL +RL L LE+ ++ E LL E + Sbjct: 429 EASKPEDLPPGVGLIQGFYQLSEVQASQILEMRLHRLTGLEQEKLTDEYKQLLGVIEGLI 488 Query: 463 SLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITV 522 +L + I E+ ++E + G R T S D L +I E + V Sbjct: 489 RILENPDVLLQVIRDELINIREEY------GDERRTEIRHSEEDLDILD--LIAPEDVVV 540 Query: 523 VISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT 574 +S+ G+ + + + SA KE D + +T D +L ++ GK + Sbjct: 541 TLSHAGYAKRQPVSAYRAQRRGGRGRSAAATKEEDFIDQLWLVNTHDTLLTFTSSGKVFW 600 Query: 575 LPAGNL--LSGRGHGEAIQLLIDLNHN---QDIVTAFVYDSTCKLLVVSSKGNAFIVEES 629 LP L G I I L Q ++ Y + + G S Sbjct: 601 LPVHQLPEAGSNARGRPIINWIPLEAGERVQAVLPVREYVDNRYVFFATRNGTVKKTPLS 660 Query: 630 EIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSRG---- 684 E +GK + + + + V GD V + N K + F + M R Sbjct: 661 EFAFRLARGKIAINLDEGDALVGVALTDGDRDVLLFASNGKTVRFGESTVRSMGRTATGV 720 Query: 685 KGVRL 689 +G+RL Sbjct: 721 RGIRL 725 >gi|222528065|ref|YP_002571947.1| DNA gyrase, A subunit [Caldicellulosiruptor bescii DSM 6725] gi|222454912|gb|ACM59174.1| DNA gyrase, A subunit [Caldicellulosiruptor bescii DSM 6725] Length = 809 Score = 416 bits (1070), Expect = e-114, Method: Compositional matrix adjust. Identities = 256/697 (36%), Positives = 408/697 (58%), Gaps = 34/697 (4%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 V ++ ++ Y+ YA+S I RA+PD+RDG KPVHRRI++AM+E+GL ++KSA +V Sbjct: 11 VEIQEEMKRSYIDYAMSVIVSRALPDVRDGLKPVHRRILYAMNEIGLTPDKPYRKSATVV 70 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G V+ K HPHGD +VY+SLVR+AQ F R+PL+ G GNFG++DGD AA RYTEARM+++ Sbjct: 71 GHVLAKYHPHGDAAVYESLVRMAQDFSMRHPLVDGHGNFGSVDGDPPAAMRYTEARMSKI 130 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A +L+ ++++ VDF ++E EP V PS+FPNLL NG+ GIAVGMAT+IP HN+ E+ Sbjct: 131 ALEMLRDIEKETVDFMPNFDESAKEPKVLPSRFPNLLVNGSQGIAVGMATNIPPHNLAEV 190 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 +A + L+DN S++ +++ I GPDFPTGG I+ ++ I ++Y G+G VRA+ +E Sbjct: 191 IDAIVYLLDNENASLDDIMKIIKGPDFPTGGYII-GKKGIRDAYATGKGKIIVRAKATIE 249 Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFPKNR 318 + +G +VVTE+PY V K+RLIEKIAEL+ KRI + DIRDES E +RIV+ K + Sbjct: 250 QTSKGRQRLVVTELPYMVNKARLIEKIAELVHEKRIDGISDIRDESDKEGLRIVIEIK-K 308 Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378 D +++++ ++ + ++ F + M L + P+V+ L +L ++ H++EV+ RR+ + Sbjct: 309 DADANVVLKQLYKNTQLQDSFGIIMLAL-VDNQPKVLTLMDMLNLYIEHQKEVIVRRTKY 367 Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAILNLR 435 ++ + R IL+GL A +IDEII+IIR+ ++ K ++SRF TE Q AIL++R Sbjct: 368 DLKKAEERAHILEGLKKALDHIDEIISIIRSSRTVNEAKERLISRFQFTEVQAQAILDMR 427 Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495 L+ L LE +I+ EL L+ E ++L S I EI E+KE + R Sbjct: 428 LQRLTGLERQKIEEELAELIRMIEYYKNVLASDAMVKEIIKKEILEIKEKYKDE-----R 482 Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSVDLSALHFKE 547 RT + D + ++ IT +++ G+I+ L K ++ + +E Sbjct: 483 RTKIIQDEHEDFEEEELIQEQETVIT--LTHFGYIKRLPLDTYKSQKRGGRGITGISTRE 540 Query: 548 GDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602 D ++ T IL + G +AY +P G S + G AI LI + ++ I Sbjct: 541 EDFVEDVFVTTTHHYILFFTDKGRVFRLRAYEVPEG---SRQAKGTAIVNLIQIGKDEKI 597 Query: 603 V-TAFVYD-STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-D 659 T V D L++ + G V SE + GK + ++ ++ + V +G D Sbjct: 598 TATMAVKDFKEGYLMMCTKNGTIKKVLLSEFENTGKSGKKAITLADDDSLVDVKLTSGND 657 Query: 660 HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDG 695 + +V N ++F+ + + M R +GV+ + +DG Sbjct: 658 EIVLVSSNGYCVVFNENDVRSMGRSAQGVKGMTLEDG 694 >gi|62290012|ref|YP_221805.1| DNA gyrase subunit A [Brucella abortus bv. 1 str. 9-941] gi|82699940|ref|YP_414514.1| DNA gyrase subunit A [Brucella melitensis biovar Abortus 2308] gi|225852600|ref|YP_002732833.1| DNA gyrase subunit A [Brucella melitensis ATCC 23457] gi|254689326|ref|ZP_05152580.1| DNA gyrase subunit A [Brucella abortus bv. 6 str. 870] gi|254717610|ref|ZP_05179421.1| DNA gyrase subunit A [Brucella ceti M13/05/1] gi|256263907|ref|ZP_05466439.1| conserved hypothetical protein [Brucella melitensis bv. 2 str. 63/9] gi|260546566|ref|ZP_05822305.1| conserved hypothetical protein [Brucella abortus NCTC 8038] gi|260754841|ref|ZP_05867189.1| DNA gyrase subunit A [Brucella abortus bv. 6 str. 870] gi|260758058|ref|ZP_05870406.1| DNA gyrase subunit A [Brucella abortus bv. 4 str. 292] gi|260761882|ref|ZP_05874225.1| DNA gyrase subunit A [Brucella abortus bv. 2 str. 86/8/59] gi|261219445|ref|ZP_05933726.1| hypothetical protein BAJG_02890 [Brucella ceti M13/05/1] gi|261314178|ref|ZP_05953375.1| conserved hypothetical protein [Brucella pinnipedialis M163/99/10] gi|261317733|ref|ZP_05956930.1| hypothetical protein BAHG_01382 [Brucella pinnipedialis B2/94] gi|261321941|ref|ZP_05961138.1| conserved hypothetical protein [Brucella ceti M644/93/1] gi|265988764|ref|ZP_06101321.1| conserved hypothetical protein [Brucella pinnipedialis M292/94/1] gi|265995015|ref|ZP_06107572.1| conserved hypothetical protein [Brucella melitensis bv. 3 str. Ether] gi|265998229|ref|ZP_06110786.1| hypothetical protein BAPG_01350 [Brucella ceti M490/95/1] gi|294852438|ref|ZP_06793111.1| hypothetical protein BAZG_01365 [Brucella sp. NVSL 07-0026] gi|62196144|gb|AAX74444.1| GyrA, DNA gyrase, A subunit [Brucella abortus bv. 1 str. 9-941] gi|82616041|emb|CAJ11077.1| DNA gyrase/topoisomerase IV, subunit A:DNA gyrase, subunit A:DNA gyrase C-terminal repeat, beta-propeller [Brucella melitensis biovar Abortus 2308] gi|225640965|gb|ACO00879.1| DNA gyrase, A subunit [Brucella melitensis ATCC 23457] gi|260095616|gb|EEW79493.1| conserved hypothetical protein [Brucella abortus NCTC 8038] gi|260668376|gb|EEX55316.1| DNA gyrase subunit A [Brucella abortus bv. 4 str. 292] gi|260672314|gb|EEX59135.1| DNA gyrase subunit A [Brucella abortus bv. 2 str. 86/8/59] gi|260674949|gb|EEX61770.1| DNA gyrase subunit A [Brucella abortus bv. 6 str. 870] gi|260924534|gb|EEX91102.1| hypothetical protein BAJG_02890 [Brucella ceti M13/05/1] gi|261294631|gb|EEX98127.1| conserved hypothetical protein [Brucella ceti M644/93/1] gi|261296956|gb|EEY00453.1| hypothetical protein BAHG_01382 [Brucella pinnipedialis B2/94] gi|261303204|gb|EEY06701.1| conserved hypothetical protein [Brucella pinnipedialis M163/99/10] gi|262552697|gb|EEZ08687.1| hypothetical protein BAPG_01350 [Brucella ceti M490/95/1] gi|262766128|gb|EEZ11917.1| conserved hypothetical protein [Brucella melitensis bv. 3 str. Ether] gi|263094040|gb|EEZ17974.1| conserved hypothetical protein [Brucella melitensis bv. 2 str. 63/9] gi|264660961|gb|EEZ31222.1| conserved hypothetical protein [Brucella pinnipedialis M292/94/1] gi|294821027|gb|EFG38026.1| hypothetical protein BAZG_01365 [Brucella sp. NVSL 07-0026] gi|326538827|gb|ADZ87042.1| DNA gyrase, A subunit [Brucella melitensis M5-90] Length = 922 Score = 416 bits (1070), Expect = e-114, Method: Compositional matrix adjust. Identities = 255/679 (37%), Positives = 379/679 (55%), Gaps = 61/679 (8%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 ++ +S+ ++ YL YA+S I RA+PD+RDG KPVHRRI+HAM+EM L + ++KSA Sbjct: 12 IEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAMNEMNLAYNRPYRKSA 71 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 +VGEV+GK HPHGD S+YD+LVR+AQ F R PLI GQGNFG+IDGD AA RYTE R+ Sbjct: 72 GVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLIDGQGNFGSIDGDPPAAMRYTECRL 131 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 +V E +L +D+D V+F+D Y+ + EPVV P++FPNLL NG+ GIAVGMAT+IP HN+ Sbjct: 132 EKVTESLLSDIDKDTVNFQDNYDGREQEPVVLPARFPNLLVNGSGGIAVGMATNIPPHNL 191 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ + +ALIDNP I + +L+E I GPDFPTGGII+ R I +Y GRG +R R Sbjct: 192 GEVIDGCVALIDNPAIELSELMELIPGPDFPTGGIIL-GRNGINSAYTTGRGSVIMRGRA 250 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316 +E + I++TEIPYQV K+ +IEK+AEL+ KRI + D+RDES + V+ Sbjct: 251 TIEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKRIDGISDLRDESDREGYRVVVEL 310 Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376 R D+++ ++ + ++T F NM L+ G+ Q+ LD +L+ ++A R EV+ RR+ Sbjct: 311 KRDAVADVVLNQLYRYTPLQTSFGCNMVALNGGKPEQLTLLD-MLRAFVAFREEVVTRRT 369 Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP----KPVMVSR------------ 420 F + R +L GL IA NIDE+IA+IR P + +M R Sbjct: 370 KFLLNKARDRAHVLVGLAIAVANIDEVIALIRRAPDPATAREQLMERRWPAVDVAPLIRL 429 Query: 421 -------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467 ++L+E Q AIL+LRL+ L L ++ EL+ + E +L S Sbjct: 430 IDDPRHTLNEDNTYNLSEEQARAILDLRLQRLTALGRDEVADELNKIGEEIRDYLDILGS 489 Query: 468 GKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNR 527 + N + E+ V++ F+ RRT E+ + +I +E + V +S+ Sbjct: 490 RLRVMNIVKEEMIAVRDEFATP-----RRT---EIGFGGAEMDDEDLIAREDMVVTVSHA 541 Query: 528 GWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYT 574 G+I R+ + S + KE D + A+T +L S+ G K + Sbjct: 542 GYIKRVPLTTYRAQRRGGKGRSGMATKEEDFVTRLFVANTHTPVLFFSSRGIVYKEKVWR 601 Query: 575 LPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY----DSTCKLLVV--SSKGNAFIVEE 628 LP G S G+A+ ++ L + I T DS L V+ +++G + Sbjct: 602 LPVGTPQS---RGKALINMLPLQQGERITTIMPLPEDEDSWANLDVMFSTTRGTVRRNKL 658 Query: 629 SEIIANTRKGKTFLKVSSE 647 S+ + R GK +K+ E Sbjct: 659 SDFVQVNRNGKIAMKLEDE 677 >gi|218508520|ref|ZP_03506398.1| DNA topoisomerase IV subunit A [Rhizobium etli Brasil 5] Length = 455 Score = 416 bits (1070), Expect = e-114, Method: Compositional matrix adjust. Identities = 196/322 (60%), Positives = 257/322 (79%) Query: 390 LKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKS 449 L GLLIAYLNIDE+I IIR ED+PKPVMV+R+ LT+NQV+AILN+RLRSLRKLEE++I+ Sbjct: 1 LGGLLIAYLNIDEVIRIIREEDEPKPVMVARWDLTDNQVEAILNMRLRSLRKLEEFEIRK 60 Query: 450 ELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKAT 509 E D L EK +I++LL S +QW +A EI EVK+ F+K+T++GRRRT F + AD+ Sbjct: 61 EFDELTKEKGEIEALLASDDKQWQTVAWEIGEVKKKFAKATEVGRRRTQFADAPEADEEA 120 Query: 510 LQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569 +QQAMIEKEPITVVIS +GWIR+LK H D + L FKEGD LK+A A TTD+IL+++T Sbjct: 121 IQQAMIEKEPITVVISEKGWIRALKGHIADTATLTFKEGDGLKVAFPAQTTDKILIVTTG 180 Query: 570 GKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEES 629 GKA+TL L GRGHGE +++++D++++Q ++TAFV+D + K L+VS+ GN F+V E+ Sbjct: 181 GKAFTLGGDKLPGGRGHGEPLRIMVDMDNDQAVLTAFVHDPSRKQLIVSTAGNGFVVAEA 240 Query: 630 EIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRL 689 E+IANTRKGK + V+ E+ +L+V V+GDHVAVVGENRKLL+F + Q+PEM+RGKGVRL Sbjct: 241 ELIANTRKGKQIMNVALPEETQLLVPVSGDHVAVVGENRKLLVFPLAQVPEMTRGKGVRL 300 Query: 690 QSYKDGGISDVICFKICEGLTW 711 Q YKDGGISDV CF I +GL W Sbjct: 301 QRYKDGGISDVRCFAISDGLVW 322 >gi|261325188|ref|ZP_05964385.1| conserved hypothetical protein [Brucella neotomae 5K33] gi|261301168|gb|EEY04665.1| conserved hypothetical protein [Brucella neotomae 5K33] Length = 922 Score = 416 bits (1070), Expect = e-114, Method: Compositional matrix adjust. Identities = 255/679 (37%), Positives = 379/679 (55%), Gaps = 61/679 (8%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 ++ +S+ ++ YL YA+S I RA+PD+RDG KPVHRRI+HAM+EM L + ++KSA Sbjct: 12 IEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAMNEMNLAYNRPYRKSA 71 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 +VGEV+GK HPHGD S+YD+LVR+AQ F R PLI GQGNFG+IDGD AA RYTE R+ Sbjct: 72 GVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLIDGQGNFGSIDGDPPAAMRYTECRL 131 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 +V E +L +D+D V+F+D Y+ + EPVV P++FPNLL NG+ GIAVGMAT+IP HN+ Sbjct: 132 EKVTESLLSDIDKDTVNFQDNYDGREQEPVVLPARFPNLLVNGSGGIAVGMATNIPPHNL 191 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ + +ALIDNP I + +L+E I GPDFPTGGII+ R I +Y GRG +R R Sbjct: 192 GEVIDGCVALIDNPAIELSELMELIPGPDFPTGGIIL-GRNGINSAYTTGRGSVIMRGRA 250 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316 +E + I++TEIPYQV K+ +IEK+AEL+ KRI + D+RDES + V+ Sbjct: 251 TIEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKRIDGISDLRDESDREGYRVVVEL 310 Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376 R D+++ ++ + ++T F NM L+ G+ Q+ LD +L+ ++A R EV+ RR+ Sbjct: 311 KRDAVADVVLNQLYRYTPLQTSFGCNMVALNGGKPEQLTLLD-MLRAFVAFREEVVTRRT 369 Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP----KPVMVSR------------ 420 F + R +L GL IA NIDE+IA+IR P + +M R Sbjct: 370 KFLLNKARDRAHMLVGLAIAVANIDEVIALIRRAPDPATAREQLMERRWPAVDVAPLIRL 429 Query: 421 -------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467 ++L+E Q AIL+LRL+ L L ++ EL+ + E +L S Sbjct: 430 IDDPRHTLNEDNTYNLSEEQARAILDLRLQRLTALGRDEVADELNKIGEEIRDYLDILGS 489 Query: 468 GKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNR 527 + N + E+ V++ F+ RRT E+ + +I +E + V +S+ Sbjct: 490 RLRVMNIVKEEMIAVRDEFATP-----RRT---EIGFGGAEMDDEDLIAREDMVVTVSHA 541 Query: 528 GWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYT 574 G+I R+ + S + KE D + A+T +L S+ G K + Sbjct: 542 GYIKRVPLTTYRAQRRGGKGRSGMATKEEDFVTRLFVANTHTPVLFFSSRGIVYKEKVWR 601 Query: 575 LPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY----DSTCKLLVV--SSKGNAFIVEE 628 LP G S G+A+ ++ L + I T DS L V+ +++G + Sbjct: 602 LPVGTPQS---RGKALINMLPLQQGERITTIMPLPEDEDSWANLDVMFSTTRGTVRRNKL 658 Query: 629 SEIIANTRKGKTFLKVSSE 647 S+ + R GK +K+ E Sbjct: 659 SDFVQVNRNGKIAMKLEDE 677 >gi|126663630|ref|ZP_01734626.1| DNA gyrase A subunit [Flavobacteria bacterium BAL38] gi|126624213|gb|EAZ94905.1| DNA gyrase A subunit [Flavobacteria bacterium BAL38] Length = 851 Score = 416 bits (1070), Expect = e-114, Method: Compositional matrix adjust. Identities = 253/709 (35%), Positives = 410/709 (57%), Gaps = 58/709 (8%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 E + +++ ++ Y+ Y++S I RA+PD+RDG KPVHRR+++ M ++G++ +A KK Sbjct: 5 EKLIPINIEEEMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMYDLGVNSRSAHKK 64 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 SARIVGEV+GK HPHGD SVYD++VR+AQ + RY L+ GQGNFG++DGDS AA RYTEA Sbjct: 65 SARIVGEVLGKYHPHGDTSVYDAMVRMAQEWSMRYLLVDGQGNFGSVDGDSPAAMRYTEA 124 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 RM +++E +L +D++ VDF+ +++ EP V P+K P LL NG SGIAVGMAT++ H Sbjct: 125 RMKKISEEMLADIDKETVDFQLNFDDTLQEPTVMPTKVPTLLINGASGIAVGMATNMAPH 184 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 N+ E+ + LA IDN +I I++L+ YI PDFPTGGII E + E+++ GRG +RA Sbjct: 185 NLTEVVDGILAYIDNNDIEIDELINYIKAPDFPTGGIIY-GYEGVREAFKTGRGRIVMRA 243 Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314 + EEV G I+VTEIPYQV K+ +I+ A+L+ K+I + +IRDES + V++ Sbjct: 244 KVGFEEVN-GREAIIVTEIPYQVNKANMIKHTADLVNDKKIEGISNIRDESDRNGMRVVY 302 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 R P++++ +++ + +++ F +N L GR PQ++ L ++ ++ HR +V+ R Sbjct: 303 ELKRDAVPNVVLNTLYKYTQLQSSFSVNNIALVKGR-PQMLNLKDLIYHFVEHRHDVVVR 361 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAI 431 R+ F ++ + R IL+GL+IA NIDE+I IIR + D+ + ++ RF L+E Q AI Sbjct: 362 RAQFDLRKAEERAHILEGLIIASDNIDEVIKIIRASKDGDEARSSLIERFKLSEIQARAI 421 Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491 + +RLR L LE+ ++++E + ++ + LL S + + I E+ E+++ + Sbjct: 422 VEMRLRQLTGLEQDKLRAEYEEIMKLITYLKELLASKEMRMQVIKDELAEIRDKY----- 476 Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSH------SVDLSAL 543 G R + E S D + + +I E + + IS+ G+I+ SL + V + Sbjct: 477 -GDERRSQIEYSGGDVSI--EDLIADESVVITISHAGYIKRTSLSEYKTQNRGGVGQKSA 533 Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKA-----YTLPAGNLLSGRGHGEAIQLLIDLNH 598 ++ D L+ A ++ + GK Y +P G S G AIQ LI++ Sbjct: 534 GTRDQDFLEHLFVATNHQYLMYFTQKGKCYWMRVYEIPEGTKAS---KGRAIQNLINI-E 589 Query: 599 NQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG---KTFLKVSSEEKMKLVVK 655 + D V AF+ K + ++ +I T++G KT L+ S+ ++ V Sbjct: 590 SDDKVKAFICTQDLK--------DQDYIKSHNLIMVTKQGQVKKTSLEKYSKPRVNGVAA 641 Query: 656 VT---GD------------HVAVVGENRKLLIFSIDQIPEMSR-GKGVR 688 +T GD V + G++ K++ F ++ M R GVR Sbjct: 642 ITIKEGDELLGAKLTNGSSQVLIAGKSGKMVRFEEEKTRPMGRTASGVR 690 >gi|39649518|emb|CAE28040.1| DNA gyrase subunit A [Rhodopseudomonas palustris CGA009] Length = 887 Score = 416 bits (1070), Expect = e-114, Method: Compositional matrix adjust. Identities = 244/621 (39%), Positives = 352/621 (56%), Gaps = 55/621 (8%) Query: 26 LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85 ++ YL YA+S I RA+PD RDG KPVHRRI++ M E G ++ ++KSAR VG+VIGK Sbjct: 1 MKRSYLDYAMSVIVARALPDARDGLKPVHRRILYGMYENGFEWNKQYRKSARTVGDVIGK 60 Query: 86 LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145 HPHGDQSVYD+LVR+AQ F R PLI GQGNFG++DGD AA RYTE+R+T++A+ +L Sbjct: 61 YHPHGDQSVYDALVRMAQDFSMRVPLIDGQGNFGSVDGDMPAAMRYTESRLTKIAQTLLD 120 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 +D+D VDF+ Y+ + EP V P+KFPNLL NG GIAVGMAT+IP HN+ E+ +A +A Sbjct: 121 DIDKDTVDFQPNYDNSEREPQVLPAKFPNLLVNGAGGIAVGMATNIPPHNLGEVIDACIA 180 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265 LID+P +SI+ L + + GPDFPTGGII+ R I +Y+ GRG +R + +E V + Sbjct: 181 LIDDPALSIDDLNKIVPGPDFPTGGIIL-GRAGIRAAYQTGRGSIVMRGKVEIETVRKDR 239 Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325 I+V+EIPYQV K+ ++E+IAEL+ K+I + D+RDES D V+ R P+++ Sbjct: 240 EAIIVSEIPYQVNKATMVERIAELVREKKIEGIGDLRDESDRDGFRVVIELRRDAVPEVV 299 Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385 + ++ + ++T F NM L GR PQ+M L +L ++A R +V+ RR+ F + Sbjct: 300 LNQLYKFTPLQTNFGANMVALEGGR-PQLMNLKDLLTVFVAFREQVVTRRTKFLLNKARD 358 Query: 386 RVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR---------------------- 420 R IL GL IA NIDEII +IRN P + ++SR Sbjct: 359 RAHILVGLAIAVANIDEIIRVIRNSPDPNTARETLMSRDWPAADVAAMITLIDDPRHKLN 418 Query: 421 ----FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476 L+ Q AIL+LRL+ L L +I ELD L E +L S + + Sbjct: 419 PDGTARLSFEQAKAILDLRLQRLTALGREEISEELDKLAVEIADYLEILRSRARVQAIVK 478 Query: 477 CEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI------ 530 E+ EVK F+ RRT E + + +I++E + V +S+ G++ Sbjct: 479 TELGEVKAEFATP-----RRTVIAE---QEGEVEDEDLIQREDMVVTVSHAGYVKRVPLS 530 Query: 531 --RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT-----LPAGNLLSG 583 R+ + S + +E D + A T +L S+ G+ Y LP L Sbjct: 531 TYRAQRRGGKGRSGMATREEDFVSRLFVASTHTPVLFFSSRGQVYKEKVWRLP---LAPP 587 Query: 584 RGHGEAIQLLIDLNHNQDIVT 604 G G+A+ ++ L + I T Sbjct: 588 NGRGKALINILPLEQGERITT 608 >gi|259907952|ref|YP_002648308.1| DNA gyrase subunit A [Erwinia pyrifoliae Ep1/96] gi|224963574|emb|CAX55064.1| DNA gyrase subunit A [Erwinia pyrifoliae Ep1/96] gi|283477833|emb|CAY73749.1| DNA gyrase, A subunit [Erwinia pyrifoliae DSM 12163] gi|310768139|gb|ADP13089.1| DNA gyrase subunit A [Erwinia sp. Ejp617] Length = 878 Score = 416 bits (1070), Expect = e-114, Method: Compositional matrix adjust. Identities = 251/635 (39%), Positives = 372/635 (58%), Gaps = 60/635 (9%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + V++ L+ YL YA+S I RA+PD+RDG KPVHRR++ AM+ +G D+ A+KKSA Sbjct: 8 ITPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKKSA 67 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG++DGDSAAA RYTE RM Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEVRM 127 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 +++A +L ++++ VDF Y+ + P V P++ PNLL NG+SGIAVGMAT+IP HN+ Sbjct: 128 SKIAHELLADLEKETVDFVPNYDGTEQIPEVMPTRIPNLLINGSSGIAVGMATNIPPHNI 187 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ LA I + I++E L+E+I GPDFPT II R I E+YR GRG +RAR Sbjct: 188 TEVINGCLAYIADENITVEGLMEHIPGPDFPTAAII-NGRRGIEEAYRTGRGKIYIRARG 246 Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314 VE + G I+V EIPYQV K+RLIEKIAEL+ KR+ + +RDES +D +RIV+ Sbjct: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRLEGISALRDESDKDGMRIVIE 306 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K ++ ++++ +++ L+ ++T F +NM L G+ P++MPL IL+ ++ HRREV+ R Sbjct: 307 VKRDAVG-EVVLNNLYSLTQLQTSFGINMVALHQGQ-PKIMPLKDILEAFVRHRREVITR 364 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----------- 420 R+ F ++ R IL+ L +A NID II +IR P K +++R Sbjct: 365 RTIFELRKARDRAHILEALAVALANIDPIIELIRAAPTPAEAKAGLIARPWVLGNVSAML 424 Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457 + LTE Q AIL+LRL+ L LE ++ E LL + Sbjct: 425 ERAGDNAARPEWLEDQYGIRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLTQ 484 Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517 ++ +L S ++ I E+ +++ F G +R T + AD + +I + Sbjct: 485 IAELLRILGSSERLMEVIREELELIRDQF------GDKRRTEITANTADINI--EDLINQ 536 Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569 E + V +S++G+++ + + SA KE D + L A+T D IL S+ Sbjct: 537 EDVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSR 596 Query: 570 GKAYTLPAGNLL-SGRG-HGEAIQLLIDLNHNQDI 602 G+ Y + L + RG G I L+ L N+ I Sbjct: 597 GRLYWMKVYQLPEASRGARGRPIVNLLPLEANERI 631 >gi|73916172|gb|AAZ92954.1| DNA gyrase subunit A [Streptococcus pneumoniae] Length = 822 Score = 416 bits (1070), Expect = e-114, Method: Compositional matrix adjust. Identities = 257/706 (36%), Positives = 414/706 (58%), Gaps = 38/706 (5%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 ++N+ V+L ++ ++ YA+S I RA+PD+RDG KPVHRRI++ M+E+G+ K Sbjct: 3 DKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHK 62 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSARI G+V+GK HPHGD S+Y+++VR+AQ + RY L+ G GNFG++DGDSAAA RYTE Sbjct: 63 KSARITGDVMGKYHPHGDFSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYTE 122 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 ARM+++A +L+ ++++ VDF D Y+ + EP+V P++FPNLL NG +GIAVGMAT+IP Sbjct: 123 ARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIPP 182 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E +A ++DNPE++ + L+E + GPDFPTG +++ + I ++Y G+G +R Sbjct: 183 HNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVM-GKSGIHKAYETGKGSIVLR 241 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312 +R +E G IVVTE PY V K+++ E I L+ KRI + +RDES E VR V Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 + K R ++++ ++F ++ M+T F NM + G +P+++ L IL ++ H++EV+ Sbjct: 302 IEVK-RDASANVILNNLFKMTQMQTNFGFNMLAIQNG-IPKILSLRQILDAYIEHQKEVV 359 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVD 429 RR+ F + + R IL+GLLIA +IDE+I IIR + + + ++S+F L+E Q Sbjct: 360 VRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSKFKLSERQSQ 419 Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489 AIL++RLR L LE +I+SE D+LLA + +L ++ I E+ EVK FS Sbjct: 420 AILDMRLRRLTGLERDKIQSEYDDLLALIADLADILAKPERVSQIIKDELDEVKRKFSD- 478 Query: 490 TDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSL--------KSHSVDL 540 +RRT E+ +L+ + +IE+ + + +SNRG+I+ L K + Sbjct: 479 ----KRRT---ELMVGQVLSLEDEDLIEESDVLITLSNRGYIKRLDQDEFTAQKRGGRGV 531 Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS-GR-GHGEAIQLLIDLNH 598 K+ D ++ + T D +L + G+ Y L + GR G + L+ L+ Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDE 591 Query: 599 NQDIVTAFVYDS----TCKLLVVSSKGNAFIVEESEI--IANTRK-GKTFLKVSSEEKMK 651 ++ I T +S L + G IV+ + + AN R+ G L + E+++ Sbjct: 592 DESIQTVINVESDRSDDAYLFFTTRHG---IVKRTSVKEFANIRQNGLKALNLKDEDELI 648 Query: 652 LVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSR-GKGVRLQSYKDG 695 V+ GD ++G + F+ + MSR GV+ + ++G Sbjct: 649 NVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMSRIATGVKGVNLREG 694 >gi|51244502|ref|YP_064386.1| DNA gyrase, subunit A [Desulfotalea psychrophila LSv54] gi|50875539|emb|CAG35379.1| probable DNA gyrase, subunit A [Desulfotalea psychrophila LSv54] Length = 847 Score = 416 bits (1070), Expect = e-114, Method: Compositional matrix adjust. Identities = 271/775 (34%), Positives = 422/775 (54%), Gaps = 43/775 (5%) Query: 6 ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65 ++ N V+E +S+ L++ YL YA+S I RA+PD+RDG KPVHRR + AM E+G Sbjct: 1 MTTENEAVQEQFPQISIEKELQKSYLDYAMSVIIGRALPDVRDGLKPVHRRALFAMRELG 60 Query: 66 LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125 + + + KSARIVG+VIGK HPHGD + YD++VR+AQ F RYPL+ GQGNFG++DGDS Sbjct: 61 IAYNRPYVKSARIVGDVIGKYHPHGDTAAYDTIVRMAQEFSLRYPLVDGQGNFGSLDGDS 120 Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185 AAA RYTEARMT++ I+ +D+D VDF Y+ +EP V PS+ PNLL NG+SGIAV Sbjct: 121 AAAMRYTEARMTRIDTEIVSDLDKDTVDFVPNYDNSLTEPSVMPSRVPNLLINGSSGIAV 180 Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245 GMAT+IP HN+ E+ + LAL D+P I++ +L+ I GPDFPTG I R I E+Y Sbjct: 181 GMATNIPPHNIVEVIDGLLALADDPNITVHELMSLITGPDFPTGAYIC-GRSGIREAYET 239 Query: 246 GRGGFRVRARWCVEEVGRGSW-CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304 GRG +RA VE G I++TEIPYQ K+ L+EKIA L+ K+I + ++RDE Sbjct: 240 GRGIVVMRALTHVETSKDGKRESIIITEIPYQQNKAVLVEKIAHLVKDKKIEAISEVRDE 299 Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364 S V+ R+ + ++++ ++ ++ M+ F + + + + P ++ L IL+ + Sbjct: 300 SDRHGTRVVIELKRNENSEVVINQLYKMTPMQRSFGIILLAIVNNK-PMILNLKQILEHF 358 Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRF 421 L HR+ V++RR++F + + + IL+GL +A N+DE++ +I+ P K +V RF Sbjct: 359 LVHRKVVVYRRTAFELGKAEEKAHILEGLNVAINNLDEVVTLIKKAQNPPEAKTNLVERF 418 Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481 L+ Q IL++RL+ L LE +I S+ +N+L E ++ ++L I E E Sbjct: 419 ELSPIQAQTILDMRLQRLTGLERGKIASDYENVLQEITRLKTILADEALILGIIKDEFLE 478 Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSL 533 ++E + RRT + A L + +I E + V +++ G+I RS Sbjct: 479 IRETYGDE-----RRTVIID---AVDDLLPEDLIAPEDMAVTVTHSGFIKRNPAALYRSQ 530 Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGR-GHG 587 +S E D + A T D L + G K Y LP L GR G Sbjct: 531 HRGGKGVSGAKNIEEDFISDLYVASTLDTFLFFTNYGKVFWRKVYQLP----LVGRTARG 586 Query: 588 EAIQLLIDLNHNQDI-----VTAFV-YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF 641 +AI L++L+ ++ + VT+F D + +L+V+ +G E RKGK Sbjct: 587 KAIVNLLELDESEKLAAILPVTSFEDEDKSKTILMVTKQGRIKKTSLQEFRRPLRKGKRA 646 Query: 642 LKVSSEEKMKLVVKVTGDHVAVVGENR-KLLIFSIDQIPEMSR-GKGVR-LQSYKDGGIS 698 L ++ +++ + GD ++ ++ K + F + M R GVR + +D + Sbjct: 647 LTINEGDEIIGAYLLNGDDTVLLCTSKGKAIHFHESDVRTMGRTAAGVRGITLGEDDEVV 706 Query: 699 DVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753 I + + + G Y + + KRGG G + K R+G +S+ Sbjct: 707 SAIVASSNDSILVVTENG--YGKRSPIEEYRIQKRGGKGIIGIKQSERNGDLISA 759 >gi|297519744|ref|ZP_06938130.1| DNA gyrase subunit A [Escherichia coli OP50] Length = 704 Score = 416 bits (1070), Expect = e-114, Method: Compositional matrix adjust. Identities = 256/659 (38%), Positives = 381/659 (57%), Gaps = 65/659 (9%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + V++ L+ YL YA+S I RA+PD+RDG KPVHRR+++AM+ +G D+ A+KKSA Sbjct: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG+IDGDSAAA RYTE R+ Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 ++A ++ ++++ VDF D Y+ + P V P+K PNLL NG+SGIAVGMAT+IP HN+ Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ LA ID+ +ISIE L+E+I GPDFPT II R I E+YR GRG +RAR Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAII-NGRRGIEEAYRTGRGKVYIRARA 246 Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314 VE + G I+V EIPYQV K+RLIEKIAEL+ KR+ + +RDES +D +RIV+ Sbjct: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K ++ ++++ +++ + ++ F +NM L G+ P++M L I+ ++ HRREV+ R Sbjct: 307 VKRDAVG-EVVLNNLYSQTQLQVSFGINMVALHHGQ-PKIMNLKDIIAAFVRHRREVVTR 364 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----------- 420 R+ F ++ R IL+ L +A NID II +IR+ P K +V+ Sbjct: 365 RTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAML 424 Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457 + LTE Q AIL+LRL+ L LE ++ E LL + Sbjct: 425 ERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQ 484 Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517 ++ +L S + I E+ V+E F G +R T + AD + +I + Sbjct: 485 IAELLRILGSADRLMEVIREELELVREQF------GDKRRTEITANSADINL--EDLITQ 536 Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569 E + V +S++G+++ + + SA KE D + L A+T D IL S+ Sbjct: 537 EDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSR 596 Query: 570 GKAYTLPAGNLLSG-RG-HGEAIQLLIDLNHNQDIVTAFV----YDSTCKLLVVSSKGN 622 G+ Y++ L RG G I L+ L ++ I TA + ++ K+ + ++ G Sbjct: 597 GRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERI-TAILPVTEFEEGVKVFMATANGT 654 >gi|73916150|gb|AAZ92943.1| DNA gyrase subunit A [Streptococcus pneumoniae] gi|73916152|gb|AAZ92944.1| DNA gyrase subunit A [Streptococcus pneumoniae] gi|73916158|gb|AAZ92947.1| DNA gyrase subunit A [Streptococcus pneumoniae] gi|73916186|gb|AAZ92961.1| DNA gyrase subunit A [Streptococcus pneumoniae] gi|73916194|gb|AAZ92965.1| DNA gyrase subunit A [Streptococcus pneumoniae] gi|73916196|gb|AAZ92966.1| DNA gyrase subunit A [Streptococcus pneumoniae] gi|73916198|gb|AAZ92967.1| DNA gyrase subunit A [Streptococcus pneumoniae] gi|73916204|gb|AAZ92970.1| DNA gyrase subunit A [Streptococcus pneumoniae] gi|73916214|gb|AAZ92975.1| DNA gyrase subunit A [Streptococcus pneumoniae] gi|73916236|gb|AAZ92986.1| DNA gyrase subunit A [Streptococcus pneumoniae] Length = 822 Score = 416 bits (1070), Expect = e-114, Method: Compositional matrix adjust. Identities = 257/706 (36%), Positives = 414/706 (58%), Gaps = 38/706 (5%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 ++N+ V+L ++ ++ YA+S I RA+PD+RDG KPVHRRI++ M+E+G+ K Sbjct: 3 DKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHK 62 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSARI G+V+GK HPHGD S+Y+++VR+AQ + RY L+ G GNFG++DGDSAAA RYTE Sbjct: 63 KSARITGDVMGKYHPHGDFSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYTE 122 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 ARM+++A +L+ ++++ VDF D Y+ + EP+V P++FPNLL NG +GIAVGMAT+IP Sbjct: 123 ARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIPP 182 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E +A ++DNPE++ + L+E + GPDFPTG +++ + I ++Y G+G +R Sbjct: 183 HNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVM-GKSGIHKAYETGKGSIVLR 241 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312 +R +E G IVVTE PY V K+++ E I L+ KRI + +RDES E VR V Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 + K R ++++ ++F ++ M+T F NM + G +P+++ L IL ++ H++EV+ Sbjct: 302 IEVK-RDASANVILNNLFKMTQMQTNFGFNMLAIQNG-IPKILSLRQILDAYIEHQKEVV 359 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVD 429 RR+ F + + R IL+GLLIA +IDE+I IIR + + + ++S+F L+E Q Sbjct: 360 VRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSKFKLSERQSQ 419 Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489 AIL++RLR L LE +I+SE D+LLA + +L ++ I E+ EVK FS Sbjct: 420 AILDMRLRRLTGLERDKIQSEYDDLLALIADLADILAKPERVSQIIKDELDEVKRKFSD- 478 Query: 490 TDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSL--------KSHSVDL 540 +RRT E+ +L+ + +IE+ + + +SNRG+I+ L K + Sbjct: 479 ----KRRT---ELMVGQILSLEDEDLIEESDVLITLSNRGYIKRLDQDEFTAQKRGGRGV 531 Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS-GR-GHGEAIQLLIDLNH 598 K+ D ++ + T D +L + G+ Y L + GR G + L+ L+ Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDE 591 Query: 599 NQDIVTAFVYDS----TCKLLVVSSKGNAFIVEESEI--IANTRK-GKTFLKVSSEEKMK 651 ++ I T +S L + G IV+ + + AN R+ G L + E+++ Sbjct: 592 DESIQTVINVESDRSDDAYLFFTTRHG---IVKRTSVKEFANIRQNGLKALNLKDEDELI 648 Query: 652 LVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSR-GKGVRLQSYKDG 695 V+ GD ++G + F+ + MSR GV+ + ++G Sbjct: 649 NVLLTEGDMDIIIGTKFGYAVRFNQSAVRGMSRIATGVKGVNLREG 694 >gi|73916176|gb|AAZ92956.1| DNA gyrase subunit A [Streptococcus pneumoniae] Length = 822 Score = 416 bits (1070), Expect = e-114, Method: Compositional matrix adjust. Identities = 257/706 (36%), Positives = 414/706 (58%), Gaps = 38/706 (5%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 ++N+ V+L ++ ++ YA+S I RA+PD+RDG KPVHRRI++ M+E+G+ K Sbjct: 3 DKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHK 62 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSARI G+V+GK HPHGD S+Y+++VR+AQ + RY L+ G GNFG++DGDSAAA RYTE Sbjct: 63 KSARITGDVMGKYHPHGDFSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYTE 122 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 ARM+++A +L+ ++++ VDF D Y+ + EP+V P++FPNLL NG +GIAVGMAT+IP Sbjct: 123 ARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIPP 182 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E +A ++DNPE++ + L+E + GPDFPTG +++ + I ++Y G+G +R Sbjct: 183 HNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVM-GKSGIHKAYETGKGSIVLR 241 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312 +R +E G IVVTE PY V K+++ E I L+ KRI + +RDES E VR V Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 + K R ++++ ++F ++ M+T F NM + G +P+++ L IL ++ H++EV+ Sbjct: 302 IEVK-RDASANVILNNLFKMTQMQTNFGFNMLAIQNG-IPKILSLRQILDAYIEHQKEVV 359 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVD 429 RR+ F + + R IL+GLLIA +IDE+I IIR + + + ++S+F L+E Q Sbjct: 360 VRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSKFKLSERQSQ 419 Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489 AIL++RLR L LE +I+SE D+LLA + +L ++ I E+ EVK FS Sbjct: 420 AILDMRLRRLTGLERDKIQSEYDDLLALIADLADILAKPERVSQIIKDELDEVKRKFSD- 478 Query: 490 TDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSL--------KSHSVDL 540 +RRT E+ +L+ + +IE+ + + +SNRG+I+ L K + Sbjct: 479 ----KRRT---ELMVGQILSLEDEDLIEESDVLITLSNRGYIKRLDQDEFTAQKRGGRGV 531 Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS-GR-GHGEAIQLLIDLNH 598 K+ D ++ + T D +L + G+ Y L + GR G + L+ L+ Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDE 591 Query: 599 NQDIVTAFVYDS----TCKLLVVSSKGNAFIVEESEI--IANTRK-GKTFLKVSSEEKMK 651 ++ I T +S L + G IV+ + + AN R+ G L + E+++ Sbjct: 592 DESIQTVINVESDRSDDAYLFFTTRHG---IVKRTSVKEFANIRQNGLKALNLKDEDELI 648 Query: 652 LVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSR-GKGVRLQSYKDG 695 V+ GD ++G + F+ + MSR GV+ + ++G Sbjct: 649 NVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMSRIATGVKGVNLREG 694 >gi|73916230|gb|AAZ92983.1| DNA gyrase subunit A [Streptococcus pneumoniae] gi|73916234|gb|AAZ92985.1| DNA gyrase subunit A [Streptococcus pneumoniae] Length = 822 Score = 416 bits (1070), Expect = e-114, Method: Compositional matrix adjust. Identities = 257/706 (36%), Positives = 414/706 (58%), Gaps = 38/706 (5%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 ++N+ V+L ++ ++ YA+S I RA+PD+RDG KPVHRRI++ M+E+G+ K Sbjct: 3 DKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHK 62 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSARI G+V+GK HPHGD S+Y+++VR+AQ + RY L+ G GNFG++DGDSAAA RYTE Sbjct: 63 KSARITGDVMGKYHPHGDFSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYTE 122 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 ARM+++A +L+ ++++ VDF D Y+ + EP+V P++FPNLL NG +GIAVGMAT+IP Sbjct: 123 ARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIPP 182 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E +A ++DNPE++ + L+E + GPDFPTG +++ + I ++Y G+G +R Sbjct: 183 HNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVM-GKSGIHKAYETGKGSIVLR 241 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312 +R +E G IVVTE PY V K+++ E I L+ KRI + +RDES E VR V Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 + K R ++++ ++F ++ M+T F NM + G +P+++ L IL ++ H++EV+ Sbjct: 302 IEVK-RDASANVILNNLFKMTQMQTNFGFNMLAIQNG-IPKILSLRQILDAYIEHQKEVV 359 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVD 429 RR+ F + + R IL+GLLIA +IDE+I IIR + + + ++S+F L+E Q Sbjct: 360 VRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSKFKLSERQSQ 419 Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489 AIL++RLR L LE +I+SE D+LLA + +L ++ I E+ EVK FS Sbjct: 420 AILDMRLRRLTGLERDKIQSEYDDLLALIADLADILAKPERVSQIIKDELDEVKRKFSD- 478 Query: 490 TDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSL--------KSHSVDL 540 +RRT E+ +L+ + +IE+ + + +SNRG+I+ L K + Sbjct: 479 ----KRRT---ELMIGQVLSLEDEDLIEESDVLITLSNRGYIKRLDQDEFTAQKRGGRGV 531 Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS-GR-GHGEAIQLLIDLNH 598 K+ D ++ + T D +L + G+ Y L + GR G + L+ L+ Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDE 591 Query: 599 NQDIVTAFVYDS----TCKLLVVSSKGNAFIVEESEI--IANTRK-GKTFLKVSSEEKMK 651 ++ I T +S L + G IV+ + + AN R+ G L + E+++ Sbjct: 592 DESIQTVINVESDRSDDAYLFFTTRHG---IVKRTSVKEFANIRQNGLKALNLKDEDELI 648 Query: 652 LVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSR-GKGVRLQSYKDG 695 V+ GD ++G + F+ + MSR GV+ + ++G Sbjct: 649 NVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMSRIATGVKGVNLREG 694 >gi|322392034|ref|ZP_08065497.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus peroris ATCC 700780] gi|321145132|gb|EFX40530.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus peroris ATCC 700780] Length = 822 Score = 416 bits (1070), Expect = e-114, Method: Compositional matrix adjust. Identities = 255/713 (35%), Positives = 414/713 (58%), Gaps = 52/713 (7%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 ++N+ V+L ++ ++ YA+S I RA+PD+RDG KPVHRRI++ M+E+G+ K Sbjct: 3 DKNLVNVNLTREMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHK 62 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSARI G+V+GK HPHGD S+Y+++VR+AQ + RY L+ G GNFG++DGD AAA RYTE Sbjct: 63 KSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYTE 122 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 ARM+++A +L+ ++++ VDF D Y+ + EP+V P++FPNLL NG +GIAVGMAT+IP Sbjct: 123 ARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIPP 182 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E +A ++DNPE++ ++L+E + GPDFPTG +++ + I ++Y G+G +R Sbjct: 183 HNLGETVDAVKLVMDNPEVTTKELMEVLPGPDFPTGALVM-GKSGIYKAYETGKGSIVLR 241 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312 +R +E G IVVTE PY V K+++ E I L+ KRI + +RDES E VR + Sbjct: 242 SRTEIEVTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFI 301 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 + K R ++++ ++F ++ M+T F NM + G VP+++ L IL ++ H++EV+ Sbjct: 302 IEVK-RDASANVILNNLFKMTQMQTSFGFNMLAIQNG-VPKILSLRQILDAYIEHQKEVV 359 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVD 429 RR+ F + + R IL+GLLIA +IDE+I IIR +++ + ++S+F L+E Q Sbjct: 360 TRRTQFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDEEAQAELMSKFKLSERQSQ 419 Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489 AIL++RLR L LE +I+SE D L+A + +L + I E+ EVK F Sbjct: 420 AILDMRLRRLTGLERDKIQSEYDELIALIADLADILAKPDRVAQIIKEELDEVKRKFGD- 478 Query: 490 TDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSL--------KSHSVDL 540 +RRT E+ + TL+ + +IE+ + + +SN+G+I+ L K + Sbjct: 479 ----KRRT---ELMVGEVLTLEDEDLIEESDVLITLSNKGYIKRLDQDEFTAQKRGGRGV 531 Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLLSGRG 585 K+ D ++ + T D +L + G+ Y LP NLL Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLK-LD 590 Query: 586 HGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK-GKTFLKV 644 GE+IQ +I+++ + A+++ +T +V + F AN R+ G L + Sbjct: 591 EGESIQTIINVDSERSD-DAYLFFTTRAGIVKRTSVKEF--------ANIRQNGLKALNL 641 Query: 645 SSEEKMKLVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSR-GKGVRLQSYKDG 695 E+++ V+ D ++G + F+ + MSR GVR + ++G Sbjct: 642 KDEDELINVLLTQEDMDIIIGTKLGYAVRFNQSTVRSMSRSATGVRGVNLREG 694 >gi|300853239|ref|YP_003778223.1| DNA gyrase subunit A [Clostridium ljungdahlii DSM 13528] gi|300433354|gb|ADK13121.1| DNA gyrase, subunit A [Clostridium ljungdahlii DSM 13528] Length = 823 Score = 416 bits (1070), Expect = e-114, Method: Compositional matrix adjust. Identities = 254/704 (36%), Positives = 412/704 (58%), Gaps = 31/704 (4%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 E + V + +++ Y+ YA+S I RA+PD+RDG KPVHRRI+++M E+GL ++ Sbjct: 4 EGKILPVDISREMKKSYIDYAMSVIVSRALPDVRDGLKPVHRRILYSMYELGLTPEKGYR 63 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 K ARIVG+V+GK HPHGD +VYD+LVRLAQ F RY L+ G GNFG++DGDSAAA RYTE Sbjct: 64 KCARIVGDVLGKYHPHGDTAVYDALVRLAQDFSIRYTLVDGHGNFGSVDGDSAAAMRYTE 123 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 A+M ++ +L+G++++ VDF ++ E+ EP V PS+FPNLL NG++GIAVGMAT+IP Sbjct: 124 AKMNKITLEMLRGINKNTVDFVPNFDGEEKEPSVLPSRFPNLLVNGSAGIAVGMATNIPP 183 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E+ + +IDNP+I+I +L+ I GPDFPT GII+ + I +Y GRG VR Sbjct: 184 HNLTEVINGVIMIIDNPDITISELMTSIKGPDFPTAGIIIGT-SGIRSAYETGRGKILVR 242 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIV 312 A+ +EEV +G I++TEIPYQV KS+LIE +A+L+ K+I + DIRDES D +RIV Sbjct: 243 AKAEIEEV-KGRNRIIITEIPYQVNKSKLIENMADLVKNKKIDGISDIRDESDRDGMRIV 301 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 + K R +P++ + ++ + M+ F + M L + P+V+ L +L +L + E++ Sbjct: 302 IELK-RDANPNVTLNQLYKHTRMQDTFGIIMISL-VNNEPKVLNLKQMLVYYLQFQEEIV 359 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVD 429 RR+ F + R IL+GL IA +IDE+I +IR+ + + ++S FSL+E Q Sbjct: 360 TRRTKFDLDKAQARAHILEGLKIALDHIDEVIHLIRSSKTAENARNGLMSEFSLSEKQAQ 419 Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489 AIL++RL+ L LE +I++E + L+ + + +L + + I E+ E+++ + Sbjct: 420 AILDMRLQRLTGLEREKIENEYNELMETIKHLKEILENKELLLKIIKDELIEIRDKY--- 476 Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD--------LS 541 G R T ++S D + +IE++ + + +++ G+I+ + + + + Sbjct: 477 ---GDERKTEIQISNDDINI--EDLIEEQEVVITLTHSGYIKRISADTYSSQRRGGKGIQ 531 Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEAIQLLIDLNHN 599 A+ KE D ++ T + IL + GK Y L + +GR G + LI L + Sbjct: 532 AMSTKEDDFVEHIFITSTHNNILFFTNKGKVYKLKGYEIPDAGRTAKGTNLVNLIPLQGD 591 Query: 600 QDIVTAFVYDSTCKLLVVSSKGNAFIVEESEI--IANTRK-GKTFLKVSSEEKMKLVVKV 656 + I + K ++++++I A+ RK G + + E+++ V Sbjct: 592 EQIQAVISFKEVDKDNYFIMATRCGLIKKTKISQYASIRKNGLNAINLKDEDELIGVRMT 651 Query: 657 TGD-HVAVVGENRKLLIFSIDQI-PEMSRGKGVRLQSYKDGGIS 698 TG+ + + +N + FS D + P GVR + + G I+ Sbjct: 652 TGESEILIFTKNGYAIRFSEDDVRPTGRNTTGVRAITLRTGDIA 695 >gi|271499645|ref|YP_003332670.1| DNA gyrase subunit A [Dickeya dadantii Ech586] gi|270343200|gb|ACZ75965.1| DNA gyrase, A subunit [Dickeya dadantii Ech586] Length = 877 Score = 416 bits (1069), Expect = e-114, Method: Compositional matrix adjust. Identities = 257/659 (38%), Positives = 381/659 (57%), Gaps = 65/659 (9%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + V++ L+ YL YA+S I RA+PD+RDG KPVHRR+++AMS +G D+ +KKSA Sbjct: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSVLGNDWNKPYKKSA 67 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG+IDGDSAAA RYTE RM Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVRM 127 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 +++A +L +D++ VDF Y+ + P V P++ PNLL NG+SGIAVGMAT+IP HN+ Sbjct: 128 SKIAHELLSDLDKETVDFVPNYDGTEQIPDVMPTRIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ LA ID+ IS+E L+ +I GPDFPT II + I E+YR GRG +RAR Sbjct: 188 SEVINGCLAYIDDENISVEGLMAHIPGPDFPTAAII-NGKRGIEEAYRTGRGKVYIRARA 246 Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314 VE + G I+V EIPYQV K+RLIEKIAEL+ KRI + +RDES +D +RIV+ Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRIDGISALRDESDKDGMRIVIE 306 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K ++ ++++ ++ + M+ F +NM L G+ P++M L IL ++ HRREV+ R Sbjct: 307 IKRDAVG-EVVLNHLYSQTQMQVSFGINMVALHQGQ-PKLMTLKDILAAFVRHRREVVTR 364 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVS------------ 419 R+ F ++ R IL+GL IA +NID II +IR+ P K +V+ Sbjct: 365 RTIFELRKARERAHILEGLAIALVNIDPIIELIRHASTPADAKTALVAQAWELGSVAAML 424 Query: 420 ----------------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457 ++ LTE Q AIL+LRL+ L LE ++ E LL + Sbjct: 425 ERAGDDAARPEWLEPEFGIHDGKYRLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLTQ 484 Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517 ++ +L S ++ I E+ ++E ++ + RRT E++ + +I + Sbjct: 485 IAELLFILRSPERLMEVIREELEAIREQYNDA-----RRT---EITHNSADINIEDLISQ 536 Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569 E + V +S++G+++ + + SA KE D + L A+T D IL S+ Sbjct: 537 ENVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSR 596 Query: 570 GKAYTLPAGNLL-SGRG-HGEAIQLLIDLNHNQDIVTAFV----YDSTCKLLVVSSKGN 622 G+ Y L L + RG G I L+ L ++ I TA + Y+ + + ++ G Sbjct: 597 GRLYWLKVYQLPEASRGARGRPIINLLPLEQDERI-TAILPVREYEEGMNVFMATASGT 654 >gi|188026161|ref|ZP_02961100.2| hypothetical protein PROSTU_03092 [Providencia stuartii ATCC 25827] gi|188021857|gb|EDU59897.1| hypothetical protein PROSTU_03092 [Providencia stuartii ATCC 25827] Length = 873 Score = 416 bits (1069), Expect = e-114, Method: Compositional matrix adjust. Identities = 253/647 (39%), Positives = 381/647 (58%), Gaps = 60/647 (9%) Query: 7 SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66 S S + + + V++ L+ YL YA+S I RA+PD+RDG KPVHRR++ AM+ +G Sbjct: 4 SGSMSDIAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGN 63 Query: 67 DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126 D+ +KKSARIVG+VIGK HPHGD +VY+++VRLAQPF RY L+ GQGNFG++DGDSA Sbjct: 64 DWNKPYKKSARIVGDVIGKYHPHGDSAVYETIVRLAQPFSMRYMLVDGQGNFGSVDGDSA 123 Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186 AA RYTE RM ++A +L ++++ VDF Y+ + P V P+K PNLL NG+SGIAVG Sbjct: 124 AAMRYTEIRMAKIAHEMLADLEKETVDFVPNYDGTEQIPEVMPTKIPNLLVNGSSGIAVG 183 Query: 187 MATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLG 246 MAT+IP HN+ E+ LA ID+ +ISIE L+E+I GPDFPT II R I+++YR G Sbjct: 184 MATNIPPHNLGEVISGCLAYIDDEDISIEGLMEHIPGPDFPTAAII-NGRRGIIDAYRTG 242 Query: 247 RGGFRVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305 RG +RAR VE + G I+V+EIPYQV K+RLIEKIAEL+ KR+ + +RDES Sbjct: 243 RGKVYIRARAEVEVDEKNGRETIIVSEIPYQVNKARLIEKIAELVKEKRVEGISALRDES 302 Query: 306 AED-VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364 +D +RIV+ K ++ ++++ +++ L+ ++ F +NM L G+ P+++ L I+ + Sbjct: 303 DKDGMRIVIEVKRDAVG-EVVLNNLYSLTQLQVSFGINMVALHQGQ-PKILNLKDIIAAF 360 Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR- 420 + HRREV+ RR+ F ++ R IL+ L +A NID II +IR P K +++R Sbjct: 361 VRHRREVVTRRTIFELRKARERAHILEALAVALANIDPIIELIRRAPTPAEAKAGLIARP 420 Query: 421 ---------------------------------FSLTENQVDAILNLRLRSLRKLEEYQI 447 + LTE Q AIL+LRL+ L LE ++ Sbjct: 421 WDLGNVAAMLERAGDDAARPEWLEEQYGVHDGQYYLTEQQAQAILDLRLQKLTGLEHEKL 480 Query: 448 KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADK 507 E +LL + E++ +L S ++ I E+ ++E+++ + RRT E + AD Sbjct: 481 LEEYRDLLKQIEELLYILRSPERLMEVIREELEAIRELYNDA-----RRTEITE-NTADI 534 Query: 508 ATLQQAMIEKEPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHT 559 + +I +E + V +S++G+++ + + SA KE D ++ L A+T Sbjct: 535 NI--EDLISQEDVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIERLLVANT 592 Query: 560 TDRILLLSTDGKAYTLPAGNLL-SGRG-HGEAIQLLIDLNHNQDIVT 604 D IL S+ G+ Y + L + RG G I L+ L ++ I Sbjct: 593 HDTILCFSSRGRLYWMKVYQLPEASRGARGRPIVNLLPLEQDERITA 639 >gi|163843366|ref|YP_001627770.1| DNA gyrase subunit A [Brucella suis ATCC 23445] gi|163674089|gb|ABY38200.1| DNA gyrase, A subunit [Brucella suis ATCC 23445] Length = 922 Score = 416 bits (1069), Expect = e-114, Method: Compositional matrix adjust. Identities = 251/679 (36%), Positives = 378/679 (55%), Gaps = 61/679 (8%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 ++ +S+ ++ YL YA+S I RA+PD+RDG KPVHRRI+HAM+EM L + ++KSA Sbjct: 12 IEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAMNEMNLAYNRPYRKSA 71 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 +VGEV+GK HPHGD S+YD+LVR+AQ F R PLI GQGNFG+IDGD AA RYTE R+ Sbjct: 72 GVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLIDGQGNFGSIDGDPPAAMRYTECRL 131 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 +V E +L +D+D V+F+D Y+ + EPVV P++FPNLL NG+ GIAVGMAT+IP HN+ Sbjct: 132 EKVTESLLSDIDKDTVNFQDNYDGREQEPVVLPARFPNLLVNGSGGIAVGMATNIPPHNL 191 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ + +ALIDNP I + +L+E I GPDFPTGGII+ R I +Y GRG +R R Sbjct: 192 GEVIDGCVALIDNPAIELSELMELIPGPDFPTGGIIL-GRNGINSAYTTGRGSVIMRGRA 250 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316 +E + I++TEIPYQV K+ +IEK+AEL+ KRI + D+RDES + V+ Sbjct: 251 TIEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKRIDGISDLRDESDREGYRVVVEL 310 Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376 R D+++ ++ + ++T F NM L+ G+ Q+ LD +L+ ++A R EV+ RR+ Sbjct: 311 KRDAVADVVLNQLYRYTPLQTSFGCNMVALNGGKPEQLTLLD-MLRAFVAFREEVVTRRT 369 Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP----KPVMVSR------------ 420 F + R +L GL IA NIDE+IA+IR P + +M R Sbjct: 370 KFLLNKARDRAHVLVGLAIAVANIDEVIALIRRAPDPATAREQLMERRWPAVDVAPLIRL 429 Query: 421 -------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467 ++L+E Q AIL+LRL+ L L ++ EL+ + E +L S Sbjct: 430 IDDPRHTLNEDNTYNLSEEQARAILDLRLQRLTALGRDEVADELNKIGEEIRDYLDILGS 489 Query: 468 GKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNR 527 + N + E+ V++ F+ RRT E+ + +I +E + V +S+ Sbjct: 490 RLRVMNIVKEEMIAVRDEFATP-----RRT---EIGFGGAEMDDEDLIAREDMVVTVSHA 541 Query: 528 GWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYT 574 G+I R+ + S + KE D + A+T +L S+ G K + Sbjct: 542 GYIKRVPLTTYRAQRRGGKGRSGMATKEEDFVTRLFVANTHTPVLFFSSRGIVYKEKVWR 601 Query: 575 LPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV------YDSTCKLLVVSSKGNAFIVEE 628 LP G S G+A+ ++ L + I T + + ++ +++G + Sbjct: 602 LPVGTPQS---RGKALINMLPLQQGERITTIMPLPEDEDFWANLDVMFSTTRGTVRRNKL 658 Query: 629 SEIIANTRKGKTFLKVSSE 647 S+ + R GK +K+ E Sbjct: 659 SDFVQVNRNGKIAMKLEDE 677 >gi|89101112|ref|ZP_01173948.1| DNA gyrase subunit A [Bacillus sp. NRRL B-14911] gi|89084167|gb|EAR63332.1| DNA gyrase subunit A [Bacillus sp. NRRL B-14911] Length = 844 Score = 416 bits (1069), Expect = e-114, Method: Compositional matrix adjust. Identities = 218/568 (38%), Positives = 358/568 (63%), Gaps = 20/568 (3%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 V +++ + +L YA+S I RA+PD+RDG KPVHRRI++AM ++G+ +KKSA Sbjct: 9 VTEINISQEMRSSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMHDLGMHSDKPYKKSA 68 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 RIVG+VIGK HPHGD +VY+++VR+AQ F RY L+ G GNFG++DGD+AAA RYTE+RM Sbjct: 69 RIVGDVIGKYHPHGDSAVYETMVRMAQDFNYRYMLVDGHGNFGSVDGDAAAAMRYTESRM 128 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 ++++ +L+ +++D +D++D Y+ E+ EPVV P++FPNLL NGT+GIAVGMAT+IP H + Sbjct: 129 SKISMELLRDINKDTIDYQDNYDGEEREPVVLPARFPNLLVNGTTGIAVGMATNIPPHQL 188 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 EI + LA+ P+I+I++L+E I GPDFPT G+I+ R I ++Y GRG +RA+ Sbjct: 189 GEIIDGVLAISQEPDITIQELMEIIPGPDFPTAGMIL-GRSGIRKAYETGRGSITLRAKV 247 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316 +E G I+V EIPYQV K+RLIEKIAEL+ K++ + D+RDES + ++ Sbjct: 248 DIETKSNGKETIIVHEIPYQVNKARLIEKIAELVRDKKVDGITDLRDESDRNGMRIVIEV 307 Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376 + + +++ +++ L+ ++T F +NM L G+ P+V+ L LK +L H++ V+ RR+ Sbjct: 308 RKDANASVILNNLYKLTALQTSFGINMLALVDGQ-PKVLNLKQCLKYYLDHQQVVIRRRT 366 Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAILN 433 F ++ R IL+GL IA ++DE+I++IR+ + ++++F L++ Q AIL+ Sbjct: 367 EFELRKAQARAHILEGLRIALDHLDEVISLIRSSQTTEIAREGLMTQFELSDKQAQAILD 426 Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493 +RL+ L LE +I+ E +L+ +++++L ++ I E+ E+KE F+ Sbjct: 427 MRLQRLTGLEREKIEDEYQSLVKLIAELEAILADEEKVLEIIREELTEIKERFNDE---- 482 Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSVDLSALHF 545 RRT VS + + +I +E I + +++ G+++ L K + + Sbjct: 483 -RRTEI--VSGGIEQIEDEDLIPRENIVITLTHNGYVKRLPVSTYRAQKRGGRGIQGMGT 539 Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAY 573 E D ++ + T + +L + GK Y Sbjct: 540 NEDDFVEHLITTSTHNTLLFFTNKGKVY 567 >gi|148244447|ref|YP_001219141.1| DNA gyrase subunit A GyrA [Candidatus Vesicomyosocius okutanii HA] gi|146326274|dbj|BAF61417.1| DNA gyrase subunit A GyrA [Candidatus Vesicomyosocius okutanii HA] Length = 861 Score = 416 bits (1069), Expect = e-114, Method: Compositional matrix adjust. Identities = 282/807 (34%), Positives = 444/807 (55%), Gaps = 80/807 (9%) Query: 7 SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66 + ++T E N V++ + YL YA+S I RA+PD+RDG KPVHRR+++AM +G Sbjct: 5 TENSTNFESNFPIVTIESEMRNSYLEYAMSVIVGRALPDVRDGLKPVHRRVLYAMDVLGN 64 Query: 67 DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126 D+ ++KKSARIVG+VIGK HPHGD +VYD++VR+AQPF R LI GQGNFG++DGDSA Sbjct: 65 DYNKSYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQPFSMRNILIDGQGNFGSVDGDSA 124 Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186 AA RYTE RM +++ +LQ +++D VDF D Y+ +SEP V P++ PNLLANG+SGIAVG Sbjct: 125 AAMRYTEIRMAKLSHELLQDLEKDTVDFVDNYDGSESEPSVLPARVPNLLANGSSGIAVG 184 Query: 187 MATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLG 246 MAT+IP HN+ E+ EA L I+N +I+I++LLE + GPDFPT GII I ++Y G Sbjct: 185 MATNIPPHNLNEVIEACLKTIENEDITIDELLEIMPGPDFPTAGII-NGTSGIRQAYETG 243 Query: 247 RGGFRVRARWCVEEV-GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305 +G +R CV + G I+VTE+PYQV K++LI KIAEL+ KRI + +RDES Sbjct: 244 KGKIYLR---CVSHIEGEEKRSIIVTELPYQVNKAKLIGKIAELVKDKRIDGITGLRDES 300 Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365 +D ++ R P++++ +++ L++M+T F +NM + G +P++M L IL+ ++ Sbjct: 301 DKDGMSMVIELRRGEVPEVILNNLYKLTEMQTVFGINMVAIDKG-IPKLMTLKDILEAFI 359 Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---------------- 409 AHRR+V+ RRS F + RV +L+GL +A NID I+ +I++ Sbjct: 360 AHRRDVVTRRSIFDLNKARNRVHLLEGLSVALYNIDNIVELIKSAPSSTDARSILIAKTW 419 Query: 410 -------------------EDKPKPV---MVSRFSLTENQVDAILNLRLRSLRKLEEYQI 447 E+ PK + M + L++ QV AIL+L+L L E+ +I Sbjct: 420 RSSVIIELVGNRDMAMFKPENLPKELGLQMSGDYQLSQKQVQAILDLKLHRLTGFEKDKI 479 Query: 448 KSELDNLLAEKEKIDSLLN--SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRA 505 E + LL E+I LL+ ++ Q+ CE E+ ++ G R T Sbjct: 480 FDEFNELL---ERIKYLLDILQTPERLMQVICE-----ELIDIQSNYGNARMTQILEHNI 531 Query: 506 DKATLQQAMIEKEPITVVISNRGWIR--SLKSHSVDL------SALHFKEGDSLKIALHA 557 D TL+ +I +E V +S+ G+++ SL + SA K+ D + A Sbjct: 532 D-LTLED-LIAQEERVVTLSHGGYVKAQSLSDYQAQCRGGKGKSATKVKDEDFVDQLFIA 589 Query: 558 HTTDRILLLSTDGKAYTLPAGNL-LSGR-GHGEAIQLLIDLNHNQDIVTAFV----YDST 611 ++ D +L S+ GK Y L +L ++ R G+ I L+ L ++I+ A + +D Sbjct: 590 NSHDIVLCFSSFGKVYWLKVYDLPMASRISRGKPIINLLPL-EKKEIINAILPILKFDEN 648 Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKL 670 + + +S G + + G +++ + +++ V +G+H + + N K Sbjct: 649 HFVFMATSSGTCKKTALTNFSKPRKGGIIAIELRNNDQLIGVEITSGEHDIMLFSANGKS 708 Query: 671 LIFSIDQIPEMSRGK-GVRLQSYKDGG--ISDVICFKICEGLTWIDSA-GRSYNRSENDL 726 + F + + R GVR DG +S ++ + LT + G+ + +E Sbjct: 709 IRFKESDVRIVGRTAIGVRGIKLVDGDKVVSLIVTNQDSPVLTATEKGFGKRTHLNEY-- 766 Query: 727 LGWLGKRGGVGSLVPKGFPRSGKFLSS 753 + RGG G + K R+GK + + Sbjct: 767 --RVQSRGGSGVISIKTSDRNGKIIGA 791 >gi|332520258|ref|ZP_08396720.1| DNA gyrase, A subunit [Lacinutrix algicola 5H-3-7-4] gi|332043611|gb|EGI79806.1| DNA gyrase, A subunit [Lacinutrix algicola 5H-3-7-4] Length = 843 Score = 416 bits (1069), Expect = e-114, Method: Compositional matrix adjust. Identities = 230/609 (37%), Positives = 371/609 (60%), Gaps = 31/609 (5%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 E + +++ ++ Y+ Y++S I RA+PD+RDG KPVHRR+++ M E+G+ +A KK Sbjct: 5 EKLIPINIEDEMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMHELGVRASSAHKK 64 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 SARIVGEV+GK HPHGD SVYD++VR+AQ + RY L+ GQGNFG++DGDS AA RYTEA Sbjct: 65 SARIVGEVLGKYHPHGDTSVYDAMVRMAQEWSLRYMLVDGQGNFGSVDGDSPAAMRYTEA 124 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 RM +++E +L +D++ VD + +++ EP V P++ P LL NG SGIAVGMAT++P H Sbjct: 125 RMRKISEDMLADIDKETVDHKLNFDDTLEEPTVLPTRIPGLLVNGASGIAVGMATNMPPH 184 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 N+ E+ + +A IDN EI I++L+++I PDFPTGG I + + E++ GRG +R Sbjct: 185 NLTEVVDGTIAYIDNHEIEIDELMQHIKAPDFPTGGTIY-GYDGVKEAFHTGRGRIVMRG 243 Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314 +EEV +G CI+VTEIPYQV K+ +I+K A+LI K++ + IRDES + +++ Sbjct: 244 NANIEEV-QGRECIIVTEIPYQVNKADMIKKTADLINDKKLEGISSIRDESDRNGMRIVY 302 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 R P++++ ++ + +++ F +N L G+ PQ++ L ++ ++ HR EV+ R Sbjct: 303 VLKRDAIPNIVLNKLYKYTALQSSFSVNNIALVNGK-PQLLNLKELIHYFVEHRHEVVVR 361 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAI 431 R+ + ++ + R IL+GL+IA NIDE+IA+IR N D+ + ++ RF L+E Q AI Sbjct: 362 RTKYELRKAEERAHILEGLIIASDNIDEVIALIRASSNADEARSKLIERFELSEIQAKAI 421 Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491 + +RLR L LE+ ++++E + L+ E + +L+ ++ + I E++ V++ + Sbjct: 422 VEMRLRQLTGLEQDKLRAEYEELMKTIEDLKDILDKKDRRMSIIKEELQLVRDKY----- 476 Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSH------SVDLSAL 543 G R + E + D + + MI E + + IS+ G+I+ SL + V A Sbjct: 477 -GDERRSKIEYAGGDLSI--EDMIPDEKVVITISHAGYIKRTSLTEYKTQNRGGVGQKAS 533 Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKA-----YTLPAGNLLSGRGHGEAIQLLIDLNH 598 + D L+ +L + GK Y +P G+ S G AIQ LI++ Sbjct: 534 TTRNEDFLEHLFVGTNHQYMLFFTQKGKCFWMRVYEIPEGSKTS---KGRAIQNLINIEQ 590 Query: 599 NQDIVTAFV 607 + D V AF+ Sbjct: 591 D-DKVMAFI 598 >gi|308187583|ref|YP_003931714.1| DNA gyrase subunit A [Pantoea vagans C9-1] gi|308058093|gb|ADO10265.1| DNA gyrase subunit A [Pantoea vagans C9-1] Length = 890 Score = 416 bits (1069), Expect = e-114, Method: Compositional matrix adjust. Identities = 254/638 (39%), Positives = 372/638 (58%), Gaps = 62/638 (9%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + V++ L+ YL YA+S I RA+PD+RDG KPVHRR+++AMS +G D+ +KKSA Sbjct: 8 ITPVNIEEELKNSYLGYAMSVIVGRALPDVRDGLKPVHRRVLYAMSVLGNDWNKPYKKSA 67 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG+IDGDSAAA RYTE RM Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRM 127 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 +++A +L ++++ VDF Y+ + P V P+K PNLL NG+SGIAVGMAT+IP HN+ Sbjct: 128 SKIAHDLLADLEKETVDFVPNYDGTEQIPEVLPTKIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 +E+ LA I++ ISIE L+E+I GPDFPT II R I E+YR GRG +RAR Sbjct: 188 REVINGCLAYIEDENISIEALMEHIPGPDFPTAAII-NGRRGIEEAYRTGRGKIYIRARG 246 Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314 VE + G I++ E+PYQV K+RLIEKIAEL+ KR+ + +RDES +D +RIV+ Sbjct: 247 EVEADAKTGRETIIIHELPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K ++ ++++ +++ L+ ++T F +NM L G+ P++M L IL ++ HRREV+ R Sbjct: 307 IKRDAVG-EVVLNNLYSLTQLQTSFGINMVALHQGQ-PKIMALKEILDAFVRHRREVVTR 364 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK----------------PVMV 418 R+ F ++ R IL+GL IA NID II +IR P M+ Sbjct: 365 RTIFELRKARDRAHILEGLAIALANIDPIIELIRRAPNPAEAKAGLIAQAWDLGNVSAML 424 Query: 419 SR---------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457 R + LTE Q AIL+LRL+ L LE ++ E LL + Sbjct: 425 ERAGDDAARPEWLDPQYGIRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKALLEQ 484 Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ-QAMIE 516 ++ +L+S ++ I E+ +++ F RRT A+ A + + +I Sbjct: 485 IAELLHILSSAERLMEVIREELELMRDQFGDD-----RRTEIT----ANTADINIEDLIN 535 Query: 517 KEPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568 +E + V +S++G+++ + + SA KE D + L A+T D IL S+ Sbjct: 536 QEDVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSS 595 Query: 569 DGKAYTLPAGNLL-SGRG-HGEAIQLLIDLNHNQDIVT 604 G+ Y + L + RG G I L+ L N+ I Sbjct: 596 RGRLYWMKVYQLPEASRGARGRPIVNLLPLEANERITA 633 >gi|161511141|ref|NP_539801.2| DNA gyrase subunit A [Brucella melitensis bv. 1 str. 16M] gi|260565641|ref|ZP_05836125.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. 16M] gi|265991179|ref|ZP_06103736.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. Rev.1] gi|260151709|gb|EEW86803.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. 16M] gi|263001963|gb|EEZ14538.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. Rev.1] Length = 922 Score = 416 bits (1069), Expect = e-114, Method: Compositional matrix adjust. Identities = 255/679 (37%), Positives = 379/679 (55%), Gaps = 61/679 (8%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 ++ +S+ ++ YL YA+S I RA+PD+RDG KPVHRRI+HAM+EM L + ++KSA Sbjct: 12 IEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAMNEMNLAYNRPYRKSA 71 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 +VGEV+GK HPHGD S+YD+LVR+AQ F R PLI GQGNFG+IDGD AA RYTE R+ Sbjct: 72 GVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLIDGQGNFGSIDGDPPAAMRYTECRL 131 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 +V E +L +D+D V+F+D Y+ + EPVV P++FPNLL NG+ GIAVGMAT+IP HN+ Sbjct: 132 EKVTESLLSDIDKDTVNFQDNYDGREQEPVVLPARFPNLLVNGSGGIAVGMATNIPPHNL 191 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ + +ALIDNP I + +L+E I GPDFPTGGII+ R I +Y GRG +R R Sbjct: 192 GEVIDGCVALIDNPAIELSELMELIPGPDFPTGGIIL-GRNGINSAYTTGRGSVIMRGRA 250 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316 +E + I++TEIPYQV K+ +IEK+AEL+ KRI + D+RDES + V+ Sbjct: 251 TIEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKRIDGISDLRDESDREGYRVVVEL 310 Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376 R D+++ ++ + ++T F NM L+ G+ Q+ LD +L+ ++A R EV+ RR+ Sbjct: 311 KRDAVADVVLNQLYRYTPLQTSFGCNMVALNGGKPEQLTLLD-MLRAFVAFREEVVTRRT 369 Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP----KPVMVSR------------ 420 F + R +L GL IA NIDE+IA+IR P + +M R Sbjct: 370 KFLLNKARDRAHVLVGLAIAVANIDEVIALIRRAPDPATAREQLMERRWPAVDVAPLIRL 429 Query: 421 -------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467 ++L+E Q AIL+LRL+ L L ++ EL+ + E +L S Sbjct: 430 IDDPRHTLNEDNTYNLSEEQARAILDLRLQRLTALGRDEVADELNKIGEEIRDYLDILGS 489 Query: 468 GKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNR 527 + N + E+ V++ F+ RRT E+ + +I +E + V +S+ Sbjct: 490 RLRVMNIVKEEMIAVRDEFATP-----RRT---EIGFGGAEMDDEDLIAREDMVVTVSHA 541 Query: 528 GWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYT 574 G+I R+ + S + KE D + A+T +L S+ G K + Sbjct: 542 GYIKRVPLTTYRAQRRGGKGRSGMATKEEDFVTRLFVANTHTPVLFFSSRGIVYKEKLWR 601 Query: 575 LPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY----DSTCKLLVV--SSKGNAFIVEE 628 LP G S G+A+ ++ L + I T DS L V+ +++G + Sbjct: 602 LPVGTPQS---RGKALINMLPLQQGERITTIMPLPEDEDSWANLDVMFSTTRGTVRRNKL 658 Query: 629 SEIIANTRKGKTFLKVSSE 647 S+ + R GK +K+ E Sbjct: 659 SDFVQVNRNGKIAMKLEDE 677 >gi|73749403|ref|YP_308642.1| DNA gyrase, A subunit [Dehalococcoides sp. CBDB1] gi|147670012|ref|YP_001214830.1| DNA gyrase subunit A [Dehalococcoides sp. BAV1] gi|289433361|ref|YP_003463234.1| DNA gyrase subunit alpha [Dehalococcoides sp. GT] gi|73661119|emb|CAI83726.1| DNA gyrase, A subunit [Dehalococcoides sp. CBDB1] gi|146270960|gb|ABQ17952.1| DNA gyrase subunit A [Dehalococcoides sp. BAV1] gi|288947081|gb|ADC74778.1| DNA gyrase, A subunit [Dehalococcoides sp. GT] Length = 809 Score = 416 bits (1069), Expect = e-114, Method: Compositional matrix adjust. Identities = 238/629 (37%), Positives = 376/629 (59%), Gaps = 31/629 (4%) Query: 12 LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71 +V N + +++ ++ YL YA+S I RA+PD+RDG KPV RRI++AM+++G+ Sbjct: 1 MVTGNTRPINIEDEMKGSYLDYAMSVIVSRALPDVRDGLKPVQRRILYAMNDLGMKHNTP 60 Query: 72 FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131 +KKSARIVGEV+GK HPHGD SVYD++VR+AQPF RYPL+ GQGNFG++D D AAA RY Sbjct: 61 YKKSARIVGEVLGKYHPHGDSSVYDAMVRMAQPFSYRYPLVDGQGNFGSVDNDPAAAMRY 120 Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191 TEAR+ Q+AE +L +D++ VDF ++ EP V P++ PNLL NG+SGIAVGMAT+I Sbjct: 121 TEARLAQIAEHLLADIDKNTVDFMPNFDSSLEEPTVLPARIPNLLMNGSSGIAVGMATNI 180 Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251 P HN+ E+C+A LIDNP+ +++L++++ GPDFPTGG I+ + + I +Y G+G Sbjct: 181 PPHNLAELCQAICYLIDNPDCGVDELMQFVSGPDFPTGGTILGT-DGIKSAYATGKGKIV 239 Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311 ++A+ + EV I VTEIPYQV K+ L+ KIAEL+ +++ + D+RDES Sbjct: 240 IQAKAHIGEV-ETRKAIFVTEIPYQVNKAELVAKIAELVKERKVTGISDLRDESDRQGMR 298 Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371 V+ R +P ++ S++ ++M T F +NM L G+ PQV+ L +LK ++ R + Sbjct: 299 VVIELKRDAEPQQVLNSLYKHTNMRTSFFVNMLALVDGQ-PQVLSLKEVLKNFIDFRHLI 357 Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQV 428 + RRS F ++A R IL+GL A ID IIAIIR N D + +++ F + Q Sbjct: 358 ITRRSQFELKAAKDRAHILEGLKKALDFIDRIIAIIRGSENGDAARKNLIAEFDFSVVQA 417 Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488 AIL+L+LR L LE +I E L+ ++ LL+ ++ + + + +++K + Sbjct: 418 QAILDLQLRRLANLERQKILDEYAELMKRIGYLEDLLSHPEKIYALVKEDAKDLKSSY-- 475 Query: 489 STDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSLKSHSVDLS------ 541 G+ R T E+S + + ++ + V +S RG+I+ + ++ L Sbjct: 476 ----GQPRAT--EISNQGVIEFRVEDLVPHMDVIVTLSERGFIKRVPANVFRLQHRGGTG 529 Query: 542 --ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGR-GHGEAIQLLIDL 596 + +E D+++ + T D +L + GK ++L ++ S R G AI LI + Sbjct: 530 IMGMPTREADAVRFLSVSDTHDTLLFFTNRGKVFSLRCFDIPDDSSRIAKGTAIVNLIPV 589 Query: 597 NHNQDIVTAFV----YDSTCKLLVVSSKG 621 ++ I TA + + + LL+ ++KG Sbjct: 590 TQDERI-TAILDLKSFPADHFLLMATNKG 617 >gi|312967532|ref|ZP_07781747.1| DNA gyrase, A subunit [Escherichia coli 2362-75] gi|312287729|gb|EFR15634.1| DNA gyrase, A subunit [Escherichia coli 2362-75] Length = 875 Score = 416 bits (1069), Expect = e-114, Method: Compositional matrix adjust. Identities = 256/659 (38%), Positives = 381/659 (57%), Gaps = 65/659 (9%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + V++ L+ YL YA+S I RA+PD+RDG KPVHRR+++AM+ +G D+ A+KKSA Sbjct: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG+IDGDSAAA RYTE R+ Sbjct: 68 RVVGDVIGKYHPHGDLAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 ++A ++ ++++ VDF D Y+ + P V P+K PNLL NG+SGIAVGMAT+IP HN+ Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ LA ID+ +ISIE L+E+I GPDFPT II R I E+YR GRG +RAR Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAII-NGRRGIEEAYRTGRGKVYIRARA 246 Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314 VE + G I+V EIPYQV K+RLIEKIAEL+ KR+ + +RDES +D +RIV+ Sbjct: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K ++ ++++ +++ + ++ F +NM L G+ P++M L I+ ++ HRREV+ R Sbjct: 307 VKRDAVG-EVVLNNLYSQTQLQVSFGINMVALHHGQ-PKIMNLKDIIAAFVRHRREVVTR 364 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----------- 420 R+ F ++ R IL+ L +A NID II +IR+ P K +V+ Sbjct: 365 RTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAML 424 Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457 + LTE Q AIL+LRL+ L LE ++ E LL + Sbjct: 425 ERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQ 484 Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517 ++ +L S + I E+ V+E F G +R T + AD + +I + Sbjct: 485 IAELLRILGSADRLMEVIREELELVREQF------GDKRRTEITANSADINL--EDLITQ 536 Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569 E + V +S++G+++ + + SA KE D + L A+T D IL S+ Sbjct: 537 EDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSR 596 Query: 570 GKAYTLPAGNLLSG-RG-HGEAIQLLIDLNHNQDIVTAFV----YDSTCKLLVVSSKGN 622 G+ Y++ L RG G I L+ L ++ I TA + ++ K+ + ++ G Sbjct: 597 GRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERI-TAILPVTEFEEGVKVFMATANGT 654 >gi|255658729|ref|ZP_05404138.1| DNA gyrase, A subunit [Mitsuokella multacida DSM 20544] gi|260849121|gb|EEX69128.1| DNA gyrase, A subunit [Mitsuokella multacida DSM 20544] Length = 808 Score = 416 bits (1069), Expect = e-114, Method: Compositional matrix adjust. Identities = 250/698 (35%), Positives = 401/698 (57%), Gaps = 36/698 (5%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 V+L ++ Y+ YA+S I RA+PD+RDG KPVHRRI++AM E G+ +KKSARIV Sbjct: 11 VNLEHEMKNSYIDYAMSVIVARALPDVRDGLKPVHRRILYAMQEAGMGSNKPYKKSARIV 70 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 GEV+GK HPHGD SVYD++VR+AQ F RY L G GNFG++DGD AAA RYTE RM+++ Sbjct: 71 GEVLGKYHPHGDSSVYDAIVRMAQDFSMRYMLADGHGNFGSVDGDPAAAMRYTEVRMSKI 130 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 AEL+LQ +D++ VDF Y+E EP V P+KFP LL NGTSGIAVGMAT+IP HN+ E+ Sbjct: 131 AELMLQDIDKETVDFTPNYDESLKEPEVLPAKFPQLLVNGTSGIAVGMATNIPPHNMCEV 190 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 + L LID+P+ +I+ L++ I GPDFPT G+I+ ++ I ++Y GRG ++RA +E Sbjct: 191 IDGTLMLIDHPDATIDDLMKVIKGPDFPTAGLIL-GQDGIRQAYTTGRGVIKMRANARIE 249 Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319 + G I+VTE+PYQV K+RL+EKIA+L+ K+I + + DES ++ R Sbjct: 250 TLSNGKPRIIVTELPYQVNKARLVEKIAQLVRDKQIEGITALNDESDRGGMRIVIDLRRD 309 Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379 + ++++ ++ + ++ F + M L G+ P+++ L +L ++AH+ +V+ RR+ + Sbjct: 310 ANANVILNQLYKHTQLQDSFGVIMLALVDGK-PKILNLKEVLHYYIAHQEDVITRRTRYD 368 Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAII---RNEDKPKPVMVSRFSLTENQVDAILNLRL 436 ++ + R IL+GL IA ++D +I I R D + ++S F L+E Q AIL+LRL Sbjct: 369 LKKAEARAHILEGLTIALDHLDAVITTIRESRTADIARAALISGFKLSEKQAQAILDLRL 428 Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496 + L LE +I+ E +L E+ ++L + I E++ VK F + RR Sbjct: 429 QRLTGLEREKIEEEYQEVLKAIEEYKAILADEGRILAIIKDELKAVKAKFGDA----RRT 484 Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DLSALHFKEG 548 + S D + +I +E + + +++ +I+ + + + + KE Sbjct: 485 RLTVDTSEID----VEDLIAEEDVVITLTHNNYIKRMALDTYRRQNRGGKGIKGMPTKEK 540 Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAF 606 D ++ L T IL + G+ Y L A + S G AI L+ L ++ I TA Sbjct: 541 DFVENLLITTTHHTILFFTNRGRVYHLKAYEIAEASRAAKGTAIINLLQLEKDEKI-TAV 599 Query: 607 V----YDSTCKLLVVSSKGNAFIVEESEII--ANTRKGK-TFLKVSSEEKMKLVVKVTGD 659 + ++ L + + KG IV+++ ++ N KG + + ++++ V G+ Sbjct: 600 IQVKGFNPDAYLFMATKKG---IVKKTSLVEFKNLHKGGLNAINLDDDDELIGVKFTDGE 656 Query: 660 HVAVVGENRKL-LIFSIDQIPEMSR-GKGVRLQSYKDG 695 ++G + ++F D + M R +GV+ S DG Sbjct: 657 RDMILGTKWGMAIVFGEDDVRAMGRAARGVKGISLNDG 694 >gi|257875898|ref|ZP_05655551.1| DNA gyrase subunit A [Enterococcus casseliflavus EC20] gi|257810064|gb|EEV38884.1| DNA gyrase subunit A [Enterococcus casseliflavus EC20] Length = 824 Score = 416 bits (1069), Expect = e-114, Method: Compositional matrix adjust. Identities = 224/560 (40%), Positives = 349/560 (62%), Gaps = 22/560 (3%) Query: 26 LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85 + E ++ YA+S I RA+PD+RDG KPVHRRI++ M+E+G+ KKSARIVG+V+GK Sbjct: 1 MRESFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHKKSARIVGDVMGK 60 Query: 86 LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145 HPHGD ++Y+S+VR+AQPF RY L+ G GNFG++DGD AAA RYTEARM+++A +L+ Sbjct: 61 YHPHGDSAIYESMVRMAQPFSYRYMLVDGHGNFGSVDGDGAAAMRYTEARMSKLAMEMLR 120 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 +++D VDF+ Y++ + EP V P++FPNLL NGT+GIAVGMAT+IP HN+ E+ A Sbjct: 121 DINKDTVDFQSNYDDTEREPAVLPARFPNLLVNGTTGIAVGMATNIPPHNLNEVIAAIDL 180 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265 L++NPE++ +L+E + GPDFPTGGI++ + I +Y G+G VR + V E+ G Sbjct: 181 LMENPEVTTSELMEVLPGPDFPTGGIVM-GKSGIRRAYETGKGSITVRGKVEVTEMPNGK 239 Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLFPKNRSLDPDL 324 I+VTE+PY V K++LIE+I+EL KRI + D+RDES+ E +RIV+ + R + + Sbjct: 240 ERILVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMRIVIDVR-RDVSASV 298 Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384 ++ +++ ++ +++ F NM + G VP+++ L IL+ ++ H++EV+ RR+ F + Sbjct: 299 ILNNLYKMTALQSSFGFNMLAIEKG-VPKILSLKRILENYIEHQQEVVTRRTQFDKNKAE 357 Query: 385 RRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAILNLRLRSLRK 441 R IL+GL IA +IDEIIA+IR ++D+ K M+ RF L++ Q AIL++RLR L Sbjct: 358 ARAHILEGLRIALDHIDEIIALIRSSNSDDEAKNSMMERFKLSDRQAQAILDMRLRRLTG 417 Query: 442 LEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCE 501 LE +I++E LL + +L + ++ I E++E+ + F RRT Sbjct: 418 LERDKIENEYQGLLEFIADLTDILANPQRVLEIIQTELQELGQRFGDD-----RRTELLV 472 Query: 502 VSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKI 553 E+ IT ++N G+I R+ + + + + D +K Sbjct: 473 GEVLSLEDEDLIEEEEIVIT--LTNNGYIKRVAKSEFRAQRRGGRGVQGMGIHDEDFVKT 530 Query: 554 ALHAHTTDRILLLSTDGKAY 573 + T D +L + GK Y Sbjct: 531 LVSCSTHDTLLFFTNKGKVY 550 >gi|229917450|ref|YP_002886096.1| DNA gyrase, A subunit [Exiguobacterium sp. AT1b] gi|229468879|gb|ACQ70651.1| DNA gyrase, A subunit [Exiguobacterium sp. AT1b] Length = 855 Score = 416 bits (1069), Expect = e-114, Method: Compositional matrix adjust. Identities = 232/631 (36%), Positives = 380/631 (60%), Gaps = 31/631 (4%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 +EN+K +++ + ++ YA+S I RA+PD+RDG KPVHRRI++AM+E+G+ K Sbjct: 4 QENIKDINISQEMRTSFMDYAMSVIVSRALPDVRDGLKPVHRRILYAMNELGIRADKPHK 63 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSAR+VG+VIGK HPHGD +VY+++VR+AQ F RY L+ G GNFG++DGDSAAA RYTE Sbjct: 64 KSARVVGDVIGKYHPHGDSAVYETMVRMAQDFSYRYELVDGHGNFGSVDGDSAAAMRYTE 123 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 ARM+++A +++ + ++ +D++ ++ E+ EPVV P++FPN L NGTSGIAVGMAT++P Sbjct: 124 ARMSKIAMELVRDIGKNTIDYQPNFDGEEKEPVVLPARFPNFLVNGTSGIAVGMATNVPP 183 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E+ + LAL NP+I+I +L+++I GPDFPT G I+ R I +Y GRG +R Sbjct: 184 HNLNEVIDGVLALSHNPDITIAELMQHIPGPDFPTAGEIL-GRSGIRRAYETGRGSITMR 242 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313 A+ +E + G I+V EIPYQV K+RL+EKIA+L+ K+I + D+RDES + ++ Sbjct: 243 AKAEIEVLKNGRERILVHEIPYQVNKARLVEKIADLVRDKKIEGITDLRDESDRNGMRIV 302 Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373 R + +++ +++ + M+T F +NM L GR P+ + + + ++ H++EV+ Sbjct: 303 IEVRRDANASVILNNLYKQTPMQTTFGVNMLALVGGR-PKTLNIKQAIYYYIEHQKEVVR 361 Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDA 430 RR+ F + + R IL+GL +A ++DE+IAIIR+ D+ + +++RF L+ Q A Sbjct: 362 RRTQFDLDKAEARAHILEGLRVALDHLDEVIAIIRSTRTGDEAREKLIARFGLSTEQTQA 421 Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490 IL++RL+ L LE +I+ E + A E++ ++L + + I E+ E+KE + + Sbjct: 422 ILDMRLQRLTGLEREKIEGEYREVKALIEELRAILGDEELLLDIIRNELIEIKERYGDA- 480 Query: 491 DLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSLKSHSVDL--------S 541 RRT V R D L+ + +I + + +++ G+I+S+ S S Sbjct: 481 ----RRT----VIRTDIVELEDEDLIPVRDMMITLTSEGYIKSIPSDSYRTQRRGGRGKQ 532 Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHN 599 + + D + L A T D IL + G+ + L + +S G I L+ ++ Sbjct: 533 GMGTNDEDFVLRLLSASTHDTILFFTNFGRVFRLKGYEIPEMSRTAKGMPIINLLQIDKG 592 Query: 600 QDIVTAFVYDSTCKLLVVSSKGNAFIVEESE 630 + + T D L N + EE++ Sbjct: 593 EKVETMIPVDFNSYL------ANQTVAEETQ 617 >gi|302148632|pdb|2XCO|A Chain A, The 3.1a Crystal Structure Of The Catalytic Core (B'a' Region) Of Staphylococcus Aureus Dna Gyrase gi|302148633|pdb|2XCQ|A Chain A, The 2.98a Crystal Structure Of The Catalytic Core (B'a' Region) Of Staphylococcus Aureus Dna Gyrase Length = 726 Score = 416 bits (1069), Expect = e-114, Method: Compositional matrix adjust. Identities = 219/503 (43%), Positives = 328/503 (65%), Gaps = 23/503 (4%) Query: 4 DNISNSNTLVEENVKAVSLRFA---------------LEERYLAYALSTIKERAIPDLRD 48 D + N +E+N +L FA + E +L YA+S I RA+PD+RD Sbjct: 216 DVVENRRQFIEDNAVYANLDFAELPQSRINERNITSEMRESFLDYAMSVIVARALPDVRD 275 Query: 49 GFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQR 108 G KPVHRRI++ ++E G+ ++KKSARIVG+V+GK HPHGD S+Y+++VR+AQ F R Sbjct: 276 GLKPVHRRILYGLNEQGMTPDKSYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYR 335 Query: 109 YPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVF 168 YPL+ GQGNFG++DGD AAA RYTEARMT++ +L+ +++D +DF D Y+ + EP V Sbjct: 336 YPLVDGQGNFGSMDGDGAAAMRYTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVL 395 Query: 169 PSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPT 228 P++FPNLLANG SGIAVGMAT+IP HN+ E+ L+L NP+ISI +L+E I GPDFPT Sbjct: 396 PARFPNLLANGASGIAVGMATNIPPHNLTELINGVLSLSKNPDISIAELMEDIEGPDFPT 455 Query: 229 GGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAE 288 G+I+ + I +Y GRG ++R+R +EE G G IVVTEIP+QV K+R+IEKIAE Sbjct: 456 AGLIL-GKSGIRRAYETGRGSIQMRSRAVIEERGGGRQRIVVTEIPFQVNKARMIEKIAE 514 Query: 289 LIIAKRIPLLEDIRDESA--EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL 346 L+ K+I + D+RDE++ VR+V+ + + + +++ +++ + ++T F +NM L Sbjct: 515 LVRDKKIDGITDLRDETSLRTGVRVVIDVR-KDANASVILNNLYKQTPLQTSFGVNMIAL 573 Query: 347 SMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAI 406 GR P+++ L L +L H++ V+ RR+ + ++ R IL+GL IA +IDEII+ Sbjct: 574 VNGR-PKLINLKEALVHYLEHQKTVVRRRTQYNLRKAKDRAHILEGLRIALDHIDEIIST 632 Query: 407 IRNEDKPKPVMVS---RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDS 463 IR D K M S RF L+E Q AIL++RLR L LE +I++E + LL ++++ Sbjct: 633 IRESDTDKVAMESLQQRFKLSEKQAQAILDMRLRRLTGLERDKIEAEYNELLNYISELET 692 Query: 464 LLNSGKQQWNQIACEIREVKEIF 486 +L + + E+ E+++ F Sbjct: 693 ILADEEVLLQLVRDELTEIRDRF 715 >gi|260168805|ref|ZP_05755616.1| DNA gyrase subunit A [Brucella sp. F5/99] gi|261758289|ref|ZP_06001998.1| DNA gyrase subunit A [Brucella sp. F5/99] gi|261738273|gb|EEY26269.1| DNA gyrase subunit A [Brucella sp. F5/99] Length = 922 Score = 416 bits (1069), Expect = e-114, Method: Compositional matrix adjust. Identities = 255/679 (37%), Positives = 379/679 (55%), Gaps = 61/679 (8%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 ++ +S+ ++ YL YA+S I RA+PD+RDG KPVHRRI+HAM+EM L + ++KSA Sbjct: 12 IEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAMNEMNLAYNRPYRKSA 71 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 +VGEV+GK HPHGD S+YD+LVR+AQ F R PLI GQGNFG+IDGD AA RYTE R+ Sbjct: 72 GVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLIDGQGNFGSIDGDPPAAMRYTECRL 131 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 +V E +L +D+D V+F+D Y+ + EPVV P++FPNLL NG+ GIAVGMAT+IP HN+ Sbjct: 132 EKVTESLLSDIDKDTVNFQDNYDGREQEPVVVPARFPNLLVNGSGGIAVGMATNIPPHNL 191 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ + +ALIDNP I + +L+E I GPDFPTGGII+ R I +Y GRG +R R Sbjct: 192 GEVIDGCVALIDNPAIELSELMELIPGPDFPTGGIIL-GRNGINSAYTTGRGSVIMRGRA 250 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316 +E + I++TEIPYQV K+ +IEK+AEL+ KRI + D+RDES + V+ Sbjct: 251 TIEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKRIDGISDLRDESDREGYRVVVEL 310 Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376 R D+++ ++ + ++T F NM L+ G+ Q+ LD +L+ ++A R EV+ RR+ Sbjct: 311 KRDAVADVVLNQLYRYTPLQTSFGCNMVALNGGKPEQLTLLD-MLRAFVAFREEVVTRRT 369 Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP----KPVMVSR------------ 420 F + R +L GL IA NIDE+IA+IR P + +M R Sbjct: 370 KFLLNKARDRAHVLVGLAIAVANIDEVIALIRRAPDPATAREQLMERRWPAVDVAPLIRL 429 Query: 421 -------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467 ++L+E Q AIL+LRL+ L L ++ EL+ + E +L S Sbjct: 430 IDDPRHTLNEDNTYNLSEEQARAILDLRLQRLTALGRDEVADELNKIGEEIRDYLDILGS 489 Query: 468 GKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNR 527 + N + E+ V++ F+ RRT E+ + +I +E + V +S+ Sbjct: 490 RLRVMNIVKEEMIAVRDEFATP-----RRT---EIGFGGAEMDDEDLIAREDMVVTVSHA 541 Query: 528 GWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYT 574 G+I R+ + S + KE D + A+T +L S+ G K + Sbjct: 542 GYIKRVPLTTYRAQRRGGKGRSGMATKEEDFVTRLFVANTHTPVLFFSSRGIVYKEKVWR 601 Query: 575 LPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY----DSTCKLLVV--SSKGNAFIVEE 628 LP G S G+A+ ++ L + I T DS L V+ +++G + Sbjct: 602 LPVGTPQS---RGKALINMLPLQQGERITTIMPLPEDEDSWANLDVMFSTTRGTVRRNKL 658 Query: 629 SEIIANTRKGKTFLKVSSE 647 S+ + R GK +K+ E Sbjct: 659 SDFVQVNRNGKIAMKLEDE 677 >gi|307709379|ref|ZP_07645837.1| DNA gyrase, A subunit [Streptococcus mitis SK564] gi|307619962|gb|EFN99080.1| DNA gyrase, A subunit [Streptococcus mitis SK564] Length = 822 Score = 416 bits (1069), Expect = e-114, Method: Compositional matrix adjust. Identities = 236/611 (38%), Positives = 371/611 (60%), Gaps = 40/611 (6%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 + N+ V+L ++ ++ YA+S I RA+PD+RDG KPVHRRI++ M+E+G+ K Sbjct: 3 DRNLVNVNLTKEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHK 62 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSARI G+V+GK HPHGD S+Y+++VR+AQ + RY L+ G GNFG++DGD AAA RYTE Sbjct: 63 KSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYTE 122 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 ARM+++A +L+ ++++ VDF D Y+ + EP+V P++FPNLL NG +GIAVGMAT+IP Sbjct: 123 ARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIPP 182 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E +A ++DNPE++ + L+E + GPDFPTG +++ + I ++Y G+G +R Sbjct: 183 HNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVM-GKSGIHKAYETGKGSIVLR 241 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312 +R +EE G IVVTE PY V K+++ E I L+ KRI + +RDES E VR V Sbjct: 242 SRTEIEETKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 + K R ++++ ++F ++ M+T F NM + G VP+++ L IL ++ H++EV+ Sbjct: 302 IEVK-RDASANVILNNLFKMTQMQTNFGFNMLAIQNG-VPKILSLRQILDAYIEHQKEVV 359 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVD 429 RR+ F + + R IL+GLLIA +IDE+I IIR + + + ++S+F L+E Q Sbjct: 360 VRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSKFKLSERQSQ 419 Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489 AIL++RLR L LE +I+SE D+LLA + +L ++ I E+ EVK F Sbjct: 420 AILDMRLRRLTGLERDKIQSEYDDLLALIADLADILAKPERVSQIIKEELDEVKRKFGD- 478 Query: 490 TDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSL--------KSHSVDL 540 +RRT E+ + +L+ + +IE+ + + +SN+G+I+ L K + Sbjct: 479 ----QRRT---ELMVGEVLSLEDEDLIEESDVLITLSNKGYIKRLDQAEFTAQKRGGRGV 531 Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLLSGRG 585 K+ D ++ + T D +L + G+ Y LP NLL Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLK-LD 590 Query: 586 HGEAIQLLIDL 596 GE+IQ +I++ Sbjct: 591 EGESIQTIINV 601 >gi|330837804|ref|YP_004412445.1| DNA gyrase subunit A [Spirochaeta coccoides DSM 17374] gi|329749707|gb|AEC03063.1| DNA gyrase subunit A [Spirochaeta coccoides DSM 17374] Length = 841 Score = 416 bits (1069), Expect = e-114, Method: Compositional matrix adjust. Identities = 249/618 (40%), Positives = 371/618 (60%), Gaps = 36/618 (5%) Query: 6 ISNSNTLVEEN---VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62 + N +VEE + + + ++ YL YA+S I RA+PD+RDG KPVHRRI++ M Sbjct: 1 MRNEEHIVEEKESRIIKIEVSQEMKTSYLNYAMSVIVSRALPDVRDGLKPVHRRILYDMY 60 Query: 63 EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122 EMGL FKKSAR+VG+V+GK HPHGD SVYD+LVRLAQ F RYP++ QGNFG+ID Sbjct: 61 EMGLRANTPFKKSARVVGDVLGKYHPHGDASVYDALVRLAQDFSLRYPVVRPQGNFGSID 120 Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182 GD AA RYTE +M+++ E +L + +D VDF Y++ EP V P+ FP +LANG+SG Sbjct: 121 GDPPAAMRYTEVKMSRIGEEMLADIQKDTVDFGPNYDDSLQEPQVLPAAFPFMLANGSSG 180 Query: 183 IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242 IAVGMAT++ HN+ EIC+A A+I+NP+I +E L++YI GPDFP+G II ++ I+++ Sbjct: 181 IAVGMATNMAPHNLTEICDAIGAVIENPDIDLEGLMQYIKGPDFPSGAIIC-GQQGIIDA 239 Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302 + GRG RAR+ +EE RGS I+ T+IPYQV K+ L++KI EL +P + +R Sbjct: 240 FSTGRGKIVQRARYEIEEHERGSDQIIFTQIPYQVNKAELVKKIDEL-RRNDLPAISAVR 298 Query: 303 DES-AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361 DES E +RIV+ K S+ P +++ ++F+ + +++ F +N L GR PQ++ L IL Sbjct: 299 DESDREGIRIVVELKKGSV-PRIVLNTLFLRTPLQSNFNVNNLALVNGR-PQLLSLKEIL 356 Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDKPKPV--MV 418 ++ +R +V+ RR+ + +Q + R IL GL I NIDE+I II+ +ED + Sbjct: 357 VHYINYREQVVERRTRYDLQKAEERAHILLGLKIGLENIDEVIRIIKESEDNAAASEGLQ 416 Query: 419 SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE 478 F LT+ Q DAI++++L L LE +I EL L + LL ++ +A E Sbjct: 417 KAFGLTKIQADAIIDMKLGRLSHLETEKILEELAELEVKIAYYKDLLADRRKILGVVAQE 476 Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWI------- 530 RE+ + G +R T E+ RA+ Q + I+ E + VVISN+G+I Sbjct: 477 TREL------AAKYGDKRLT--EIQRAEIGQTQVEDFIKNEEVVVVISNKGFIKRVVAEE 528 Query: 531 -RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY-----TLPAGNLLSGR 584 RS + D ++ A T D ++ +S+ GKAY +P G+ +S Sbjct: 529 YRSQGRGGSGVKGAKLINDDFVEHLYVASTHDYVMFVSSFGKAYWIKVHEIPEGSKVS-- 586 Query: 585 GHGEAIQLLIDLNHNQDI 602 G +I+ LID+ ++I Sbjct: 587 -KGSSIKQLIDITDGEEI 603 >gi|251790599|ref|YP_003005320.1| DNA gyrase subunit A [Dickeya zeae Ech1591] gi|247539220|gb|ACT07841.1| DNA gyrase, A subunit [Dickeya zeae Ech1591] Length = 877 Score = 416 bits (1069), Expect = e-114, Method: Compositional matrix adjust. Identities = 254/659 (38%), Positives = 381/659 (57%), Gaps = 65/659 (9%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + V++ L+ YL YA+S I RA+PD+RDG KPVHRR+++AM+ +G D+ +KKSA Sbjct: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKPYKKSA 67 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG+IDGDSAAA RYTE RM Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVRM 127 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 +++A +L +D++ VDF Y+ + P V P++ PNLL NG+SGIAVGMAT+IP HN+ Sbjct: 128 SKIAHELLSDLDKETVDFVPNYDGTEQIPDVMPTRIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ LA ID+ IS+E L+E+I GPDFPT II + I E+YR GRG +RAR Sbjct: 188 SEVINGCLAYIDDENISVEGLMEHIPGPDFPTAAII-NGKRGIEEAYRTGRGKVYIRARA 246 Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314 VE + G I+V EIPYQV K+RLIEKIAEL+ KRI + +RDES +D +RIV+ Sbjct: 247 EVEADAKSGRETIIVHEIPYQVNKARLIEKIAELVKEKRIEGISALRDESDKDGMRIVIE 306 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K ++ ++++ ++ + M+ F +NM L G+ P++M L IL ++ HRREV+ R Sbjct: 307 IKRDAVG-EVVLNHLYSQTQMQVSFGINMVALHQGQ-PKLMTLKEILAAFVRHRREVVTR 364 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS--------------- 419 R+ F ++ R IL+GL IA +NID II +IR+ P ++ Sbjct: 365 RTIFELRKARERAHILEGLAIALVNIDPIIELIRHASTPAEAKIALVAQAWELGSVAAML 424 Query: 420 ----------------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457 ++ LT+ Q AIL+LRL+ L LE ++ E LL + Sbjct: 425 ERAGDDAARPEWLEPEFGIHDGKYHLTDQQAQAILDLRLQKLTGLEHEKLLDEYKELLTQ 484 Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517 ++ +L S ++ I E+ ++E+++ + RRT E++ + +I + Sbjct: 485 IAELLFILRSPERLMEVIREELVAIRELYNDA-----RRT---EITHNSADINIEDLISE 536 Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569 E + V +S++G+++ + + SA KE D + L A+T D IL S+ Sbjct: 537 ENVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSR 596 Query: 570 GKAYTLPAGNLL-SGRG-HGEAIQLLIDLNHNQDIVTAFV----YDSTCKLLVVSSKGN 622 G+ Y L L + RG G I L+ L ++ I TA + Y+ + + ++ G Sbjct: 597 GRLYWLKVYQLPEASRGARGRPIINLLPLEQDERI-TAILPVREYEEGMNVFMATASGT 654 >gi|89255940|ref|YP_513302.1| DNA gyrase, subunit A [Francisella tularensis subsp. holarctica LVS] gi|156501933|ref|YP_001427998.1| DNA gyrase subunit A [Francisella tularensis subsp. holarctica FTNF002-00] gi|167009155|ref|ZP_02274086.1| DNA gyrase, A subunit [Francisella tularensis subsp. holarctica FSC200] gi|254367295|ref|ZP_04983322.1| DNA gyrase subunit A gyrA [Francisella tularensis subsp. holarctica 257] gi|254368771|ref|ZP_04984784.1| DNA topoisomerase [Francisella tularensis subsp. holarctica FSC022] gi|290954615|ref|ZP_06559236.1| DNA gyrase, subunit A [Francisella tularensis subsp. holarctica URFT1] gi|295311958|ref|ZP_06802782.1| DNA gyrase, subunit A [Francisella tularensis subsp. holarctica URFT1] gi|89143771|emb|CAJ78973.1| DNA gyrase, subunit A [Francisella tularensis subsp. holarctica LVS] gi|134253112|gb|EBA52206.1| DNA gyrase subunit A gyrA [Francisella tularensis subsp. holarctica 257] gi|156252536|gb|ABU61042.1| DNA gyrase, A subunit [Francisella tularensis subsp. holarctica FTNF002-00] gi|157121692|gb|EDO65862.1| DNA topoisomerase [Francisella tularensis subsp. holarctica FSC022] Length = 868 Score = 416 bits (1069), Expect = e-114, Method: Compositional matrix adjust. Identities = 258/736 (35%), Positives = 419/736 (56%), Gaps = 87/736 (11%) Query: 11 TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70 +++ + ++++ L++ YL YA+S I RA+PD+RDG KPVHRR++ AM+E+ + Sbjct: 2 SIITKESSSINIEKELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELSNYYNR 61 Query: 71 AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130 +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG++DGDS AA R Sbjct: 62 PYKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYTLVDGQGNFGSVDGDSPAAMR 121 Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190 YTE RM ++ +L +D++ VDF Y+ + P V P++ PNLL NG+SGIAVGMAT+ Sbjct: 122 YTEIRMEKLTHELLIDIDKETVDFSPNYDNTELVPDVLPTRVPNLLVNGSSGIAVGMATN 181 Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250 IP HN+ E+ +ALIDNP ++IE+L+EYI PDFPTG I + I+E+Y+ GRG Sbjct: 182 IPPHNMTEVINGTIALIDNPNLTIEELIEYIPAPDFPTGSYI-NGTDGILEAYKTGRGRV 240 Query: 251 RVRARWCV-EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED- 308 +RA+ + E+ G I+VTEIPYQV K++L+EKIAEL+ K++ + ++RDES +D Sbjct: 241 IMRAKADIHEDEASGKAQIIVTEIPYQVNKAKLVEKIAELVKDKKVAGISELRDESDKDG 300 Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368 +R+V+ K R P++++ +++ + ++ F +NM LS R P+++ L IL++++ HR Sbjct: 301 IRVVIDLK-RDESPEVVLNTLYAQTQLQCSFGINMVALSDNR-PKLLNLKEILEQFIKHR 358 Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----- 420 +EV+ RR+ F ++ R IL+GLL++ NIDE+I +I+ P K M++R Sbjct: 359 KEVVTRRTIFELRKSKERAHILEGLLLSLANIDEMIELIKASPSPADAKESMLARSWNGS 418 Query: 421 ------------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSE 450 ++LTE Q DAIL LRL L LE+ +I +E Sbjct: 419 MVKSMLEGVDVKMYRKETLASHYGIQVDSSYNLTEEQADAILALRLHRLTGLEQDKIVNE 478 Query: 451 LDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATL 510 L+ + + S+L+ K+ + E+ E+++ + +R++ E SR D Sbjct: 479 FKELIDRIKYLISILSDIKELICVVKDELVEIRDNYGD-----QRKSEIIE-SRLD--LT 530 Query: 511 QQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDR 562 ++ +I +E + V +S G++++ K V SA KE DS+ + A T D Sbjct: 531 REDLIAEEDMVVTLSMDGYVKTQPLSMYNAQKRGGVGKSATKTKEEDSIFKLMLASTHDT 590 Query: 563 ILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV----YDSTCK 613 +L S+ G K Y P + +S G I ++ L ++ I TA + ++ Sbjct: 591 MLCFSSLGRVYWSKVYDFPVASRIS---KGRPINNILPLEKDERI-TAMMPISQFNEGWY 646 Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIF 673 + + + G V+ SE GK + ++ +++ +VA+ N+++++F Sbjct: 647 VFMATKLGRVKKVDLSEFARPRSTGKIAIGLNDGDELS--------YVALTDGNKQIMMF 698 Query: 674 SIDQIPEMSRGKGVRL 689 S GK +R Sbjct: 699 S-------DAGKAIRF 707 >gi|295098107|emb|CBK87197.1| DNA gyrase subunit A [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 878 Score = 416 bits (1068), Expect = e-114, Method: Compositional matrix adjust. Identities = 257/659 (38%), Positives = 380/659 (57%), Gaps = 65/659 (9%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + V++ L+ YL YA+S I RA+PD+RDG KPVHRR+++AM+ +G D+ A+KKSA Sbjct: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG+IDGDSAAA RYTE R+ Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 ++A ++ ++++ VDF D Y+ + P V P+K PNLL NG+SGIAVGMAT+IP HN+ Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNI 187 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ LA ID+ +ISIE L+E+I GPDFPT II R I E+YR GRG +RAR Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAII-NGRRGIEEAYRTGRGKIYIRARA 246 Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314 VE + G I+V EIPYQV K+RLIEKIAEL+ KR+ + +RDES +D +RIV+ Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K ++ ++++ +++ + ++ F +NM L G+ P++M L IL ++ HRREV+ R Sbjct: 307 IKRDAVG-EVVLNNLYSQTQLQVSFGINMVALHHGQ-PKIMNLKEILSAFVRHRREVVTR 364 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----------- 420 R+ F ++ R IL+ L +A NID II +IR P K +V+R Sbjct: 365 RTIFELRKARDRAHILEALAVALANIDPIIELIRRAPTPAEAKASLVARPWDLGNVAAML 424 Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457 + LTE Q AIL+LRL+ L LE ++ E LL + Sbjct: 425 ERAGDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQ 484 Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517 ++ +L S ++ I E+ V++ F RRT E++ + +I + Sbjct: 485 IAELLHILGSAERLMEVIREELELVRDQFGDE-----RRT---EITANSSDINIEDLINR 536 Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569 E + V +S++G+++ + + SA KE D + L A+T D IL S+ Sbjct: 537 EDVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSR 596 Query: 570 GKAYTLPAGNLL-SGRG-HGEAIQLLIDLNHNQDIVTAFV----YDSTCKLLVVSSKGN 622 G+ Y + L + RG G I L+ L N+ I TA + Y+ + + ++ G Sbjct: 597 GRLYWMKVYQLPEASRGARGRPIVNLLPLEANERI-TAILPVREYEEGVNVFMATASGT 654 >gi|322376501|ref|ZP_08050994.1| DNA gyrase, A subunit [Streptococcus sp. M334] gi|321282308|gb|EFX59315.1| DNA gyrase, A subunit [Streptococcus sp. M334] Length = 821 Score = 416 bits (1068), Expect = e-114, Method: Compositional matrix adjust. Identities = 258/711 (36%), Positives = 411/711 (57%), Gaps = 55/711 (7%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 + N+ V+L ++ ++ YA+S I RA+PD+RDG KPVHRRI++ M+E+G+ K Sbjct: 3 DRNLVNVNLTKEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHK 62 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSARI G+V+GK HPHGD S+Y+++VR+AQ + RY L+ G GNFG++DGD AAA RYTE Sbjct: 63 KSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYTE 122 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 ARM+++A +L+ ++++ VDF D Y+ + EP+V P++FPNLL NG +GIAVGMAT+IP Sbjct: 123 ARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIPP 182 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E +A ++DNPE++ + L+E + GPDFPTG +++ + I ++Y G+G +R Sbjct: 183 HNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVM-GKSGIHKAYETGKGSIVLR 241 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312 +R +EE G IVVTE PY V K+++ E I L+ KRI + +RDES E VR V Sbjct: 242 SRTEIEETKAGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 + K R ++++ ++F ++ M+T F NM + G VP+++ L IL ++ H++EV+ Sbjct: 302 IEVK-RDASANVILNNLFKMTQMQTNFGFNMLAIQNG-VPKILSLRQILDAYIEHQKEVV 359 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVD 429 RR+ F + + R IL+GLLIA +IDE+I IIR + + + ++S+F L+E Q Sbjct: 360 VRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSKFKLSERQSQ 419 Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489 AIL++RLR L LE +I+SE D+LLA + +L ++ I E+ EVK F Sbjct: 420 AILDMRLRRLTGLERDKIQSEYDDLLALIADLADILAKPERVSQIIKDELDEVKRKFGD- 478 Query: 490 TDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSL--------KSHSVDL 540 +RRT E+ + +L+ + +IE+ + + +SN+G+I+ L K + Sbjct: 479 ----QRRT---ELMVGEVLSLEDEDLIEESDVLITLSNKGYIKRLDQAEFTAQKRGGRGV 531 Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLLSGRG 585 K+ D ++ + T D +L + G+ Y LP NLL Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPIVNLLK-LD 590 Query: 586 HGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK-GKTFLKV 644 GE+IQ +I++ + A+++ +T +V + F AN R+ G L + Sbjct: 591 EGESIQTIINVESERSD-DAYLFFTTRHGIVKRTSVKEF--------ANIRQNGLKALNL 641 Query: 645 SSEEKMKLVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSRG----KGVRLQ 690 E+++ V+ D ++G + F + MSRG KGV L+ Sbjct: 642 KDEDELINVLLTEEDTDIIIGTKFGYAVRFKQSVVRGMSRGATGVKGVNLR 692 >gi|254512056|ref|ZP_05124123.1| DNA gyrase, A subunit [Rhodobacteraceae bacterium KLH11] gi|221535767|gb|EEE38755.1| DNA gyrase, A subunit [Rhodobacteraceae bacterium KLH11] Length = 907 Score = 416 bits (1068), Expect = e-114, Method: Compositional matrix adjust. Identities = 251/674 (37%), Positives = 383/674 (56%), Gaps = 57/674 (8%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 VS+ + YL YA+S I RAIPDLRDG KPVHRRI++AM E G A++KSAR V Sbjct: 26 VSIESEMRTSYLDYAMSVIVSRAIPDLRDGLKPVHRRILYAMHETGNTHDKAYRKSARPV 85 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+V+GK HPHGD ++YD+LVR+AQ F PL+ GQGNFG++DGD+ AA RYTE RM + Sbjct: 86 GDVMGKYHPHGDSAIYDALVRMAQDFSMSLPLLDGQGNFGSMDGDNPAAMRYTEVRMDKP 145 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A +L ++++ VDF+D Y+ +D EP V P++FPN+L NG GIAVGMAT+IP HN+ E+ Sbjct: 146 AASLLADIEKETVDFQDNYDGKDKEPTVLPARFPNMLVNGAGGIAVGMATNIPPHNLGEV 205 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 +A LALID+P+++ E+L+EY+ GPDFPTGG+++ R ++Y GRG +RA+ E Sbjct: 206 VDATLALIDDPDLTSEQLIEYVPGPDFPTGGVML-GRSGARKAYLEGRGSVIIRAKTRTE 264 Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKNR 318 E+ + + IVV EIPYQV K+ +IEKIAE + KRI + ++DES + VR+V+ K R Sbjct: 265 EIRKDRYAIVVDEIPYQVNKASMIEKIAEAVREKRIEGVAHVQDESDRNGVRVVVELK-R 323 Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378 P++++ ++ S M+T F NM L+ GR P+ + L L ++ R +V+ RR+++ Sbjct: 324 DATPEVVLNQLYRFSPMQTSFGCNMLALNGGR-PEQLTLRRFLTSFIDFREDVVARRTAY 382 Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---------------------------D 411 ++ R IL GL +A N+DE++A IR+ D Sbjct: 383 DLRKARERSHILCGLAVAVSNVDEVVATIRSSADAAEAREKLMTRRWPASEIEGYLRLID 442 Query: 412 KPKPVMV--SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGK 469 P M ++LTE Q AIL+LRL+ L ++ ++ EL+ L A+ ++ +L+S + Sbjct: 443 DPLSKMNDDGTYNLTEVQARAILDLRLQRLTQIGVKEVTDELEELAAKIKEYLDILSSRE 502 Query: 470 QQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW 529 + + I E+R V+E F+ RRT + S + +IE+E + V +++ G+ Sbjct: 503 RIMSIIGDELRSVREQFAVP-----RRTEIVDWS---GDMEDEDLIEREDMVVTVTSGGY 554 Query: 530 I--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL 581 I R+ K LS + KE D + A+T ++L +TDG Y L L Sbjct: 555 IKRTPLADFRAQKRGGKGLSGMQTKEEDVVTNLFVANTHTQLLFFTTDGMVYKLKTWRLP 614 Query: 582 --SGRGHGEAIQLLIDLNHNQDIVTAFVYD------STCKLLVVSSKGNAFIVEESEIIA 633 S G G+AI ++ + I D +++ +S G+ S+ Sbjct: 615 QSSRTGKGKAIVNILPIPTGVSIAAIMPVDVPDEEWENLQIVFATSAGDVRRNRLSDFTN 674 Query: 634 NTRKGKTFLKVSSE 647 R GK +K+ + Sbjct: 675 VRRNGKIAMKLPED 688 >gi|62180845|ref|YP_217262.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|62128478|gb|AAX66181.1| DNA gyrase, subunit A, type II topoisomerase [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|312913262|dbj|BAJ37236.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] Length = 878 Score = 416 bits (1068), Expect = e-114, Method: Compositional matrix adjust. Identities = 276/747 (36%), Positives = 411/747 (55%), Gaps = 69/747 (9%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + V++ L+ YL YA+S I RA+PD+RDG KPVHRR+++AM+ +G D+ A+KKSA Sbjct: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD +VY+++VR+AQPF RY L+ GQGNFG+IDGDSAAA RYTE R+ Sbjct: 68 RVVGDVIGKYHPHGDFAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 ++A ++ ++++ VDF D Y+ + P V P+K PNLL NG+SGIAVGMAT+IP HN+ Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ LA IDN +ISIE L+E+I GPDFPT II R I E+YR GRG +RAR Sbjct: 188 TEVINGCLAYIDNEDISIEGLMEHIPGPDFPTAAII-NGRRGIEEAYRTGRGKVYIRARA 246 Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314 VE + G I+V EIPYQV K+RLIEKIAEL+ KR+ + +RDES +D +RIV+ Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKDGMRIVIE 306 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K ++ ++++ +++ + ++ F +NM L G+ P++M L I+ ++ HRREV+ R Sbjct: 307 VKRDAVG-EVVLNNLYSQTQLQVSFGINMVALHHGQ-PKIMNLKDIISAFVRHRREVVTR 364 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----------- 420 R+ F ++ R IL+ L IA NID II +IR P K ++SR Sbjct: 365 RTIFELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAALISRPWDLGNVAAML 424 Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457 + LTE Q AIL+LRL+ L LE ++ E LL + Sbjct: 425 ERAGDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQ 484 Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517 ++ +L S + I E+ +++ F G R T + AD + +I + Sbjct: 485 IAELLHILGSADRLMEVIREEMELIRDQF------GDERRTEITANSADINI--EDLISQ 536 Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569 E + V +S++G+++ + + SA KE D + L A+T D IL S+ Sbjct: 537 EDVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSR 596 Query: 570 GKAYTLPAGNLL-SGRG-HGEAIQLLIDLNHNQDIVTAFV----YDSTCKLLVVSSKGNA 623 G+ Y + L + RG G I L+ L N+ I TA + Y+ + + ++ G Sbjct: 597 GRLYWMKVYQLPEASRGARGRPIVNLLPLEANERI-TAILPVREYEEGVNVFMATASGTV 655 Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMS 682 +E G + ++ +++ V +G D V + K++ F D + M Sbjct: 656 KKTALTEFSRPRSAGIIAVNLNDGDELIGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAMG 715 Query: 683 R-GKGVRLQSYKDGGISDVICFKICEG 708 R GVR K G V+ I G Sbjct: 716 RTATGVR--GIKLAGDDKVVSLIIPRG 740 >gi|74312751|ref|YP_311170.1| DNA gyrase subunit A [Shigella sonnei Ss046] gi|73856228|gb|AAZ88935.1| DNA gyrase subunit A [Shigella sonnei Ss046] Length = 875 Score = 416 bits (1068), Expect = e-114, Method: Compositional matrix adjust. Identities = 256/659 (38%), Positives = 381/659 (57%), Gaps = 65/659 (9%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + V++ L+ YL YA+S I RA+PD+RDG KPVHRR+++AM+ +G D+ A+KKSA Sbjct: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG+IDGDSAAA RYTE R+ Sbjct: 68 RVVGDVIGKYHPHGDLAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 ++A ++ ++++ VDF D Y+ + P V P+K PNLL NG+SGIAVGMAT+IP HN+ Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ LA ID+ +ISIE L+E+I GPDFPT II R I E+YR GRG +RAR Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAII-NGRRGIEEAYRTGRGKVYIRARA 246 Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314 VE + G I+V EIPYQV K+RLIEKIAEL+ KR+ + +RDES +D +RIV+ Sbjct: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K ++ ++++ +++ + ++ F +NM L G+ P++M L I+ ++ HRREV+ R Sbjct: 307 VKRDAVG-EVVLNNLYSQTQLQVSFGINMVALHHGQ-PKIMNLKDIIAAFVRHRREVVTR 364 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----------- 420 R+ F ++ R IL+ L +A NID II +IR+ P K +V+ Sbjct: 365 RTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAML 424 Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457 + LTE Q AIL+LRL+ L LE ++ E LL + Sbjct: 425 ERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQ 484 Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517 ++ +L S + I E+ V+E F G +R T + AD + +I + Sbjct: 485 IAELLRILGSADRLMEVIREELELVREQF------GDKRRTEITANSADINL--EDLITQ 536 Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569 E + V +S++G+++ + + SA KE D + L A+T D IL S+ Sbjct: 537 EDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSR 596 Query: 570 GKAYTLPAGNLLSG-RG-HGEAIQLLIDLNHNQDIVTAFV----YDSTCKLLVVSSKGN 622 G+ Y++ L RG G I L+ L ++ I TA + ++ K+ + ++ G Sbjct: 597 GRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERI-TAILPVTEFEEGVKVFMATANGT 654 >gi|23501975|ref|NP_698102.1| DNA gyrase subunit A [Brucella suis 1330] gi|261755064|ref|ZP_05998773.1| DNA gyrase subunit A [Brucella suis bv. 3 str. 686] gi|23347924|gb|AAN30017.1| DNA gyrase, A subunit [Brucella suis 1330] gi|261744817|gb|EEY32743.1| DNA gyrase subunit A [Brucella suis bv. 3 str. 686] Length = 922 Score = 416 bits (1068), Expect = e-114, Method: Compositional matrix adjust. Identities = 251/679 (36%), Positives = 378/679 (55%), Gaps = 61/679 (8%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 ++ +S+ ++ YL YA+S I RA+PD+RDG KPVHRRI+HAM+EM L + ++KSA Sbjct: 12 IEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAMNEMNLAYNRPYRKSA 71 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 +VGEV+GK HPHGD S+YD+LVR+AQ F R PLI GQGNFG+IDGD AA RYTE R+ Sbjct: 72 GVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLIDGQGNFGSIDGDPPAAMRYTECRL 131 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 +V E +L +D+D V+F+D Y+ + EPVV P++FPNLL NG+ GIAVGMAT+IP HN+ Sbjct: 132 EKVTESLLSDIDKDTVNFQDNYDGREQEPVVLPARFPNLLVNGSGGIAVGMATNIPPHNL 191 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ + +ALIDNP I + +L+E I GPDFPTGGII+ R I +Y GRG +R R Sbjct: 192 GEVIDGCVALIDNPAIELSELMELIPGPDFPTGGIIL-GRNGINSAYTTGRGSVIMRGRA 250 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316 +E + I++TEIPYQV K+ +IEK+AEL+ KRI + D+RDES + V+ Sbjct: 251 TIEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKRIDGISDLRDESDREGYRVVVEL 310 Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376 R D+++ ++ + ++T F NM L+ G+ Q+ LD +L+ ++A R EV+ RR+ Sbjct: 311 KRDAVADVVLNQLYRYTPLQTSFGCNMVALNGGKPEQLTLLD-MLRAFVAFREEVVTRRT 369 Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP----KPVMVSR------------ 420 F + R +L GL IA NIDE+IA+IR P + +M R Sbjct: 370 KFLLNKARDRAHVLVGLAIAVANIDEVIALIRRAPDPATAREQLMERRWPAVDVAPLIRL 429 Query: 421 -------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467 ++L+E Q AIL+LRL+ L L ++ EL+ + E +L S Sbjct: 430 IDDPRHTLNEDNTYNLSEEQARAILDLRLQRLTALGRDEVADELNKIGEEIRDYLDILGS 489 Query: 468 GKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNR 527 + N + E+ V++ F+ RRT E+ + +I +E + V +S+ Sbjct: 490 RLRVMNIVKEEMIAVRDEFATP-----RRT---EIGFGGAEMDDEDLIAREDMVVTVSHA 541 Query: 528 GWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYT 574 G+I R+ + S + KE D + A+T +L S+ G K + Sbjct: 542 GYIKRVPLTTYRAQRRGGKGRSGMATKEEDFVTRLFVANTHTPVLFFSSRGIVYKEKVWR 601 Query: 575 LPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV------YDSTCKLLVVSSKGNAFIVEE 628 LP G S G+A+ ++ L + I T + + ++ +++G + Sbjct: 602 LPVGTPQS---RGKALINMLPLQQGERITTIMPLPEDEDFWANLDVMFSTTRGTVRRNKL 658 Query: 629 SEIIANTRKGKTFLKVSSE 647 S+ + R GK +K+ E Sbjct: 659 SDFVQVNRNGKIAMKLEDE 677 >gi|148989241|ref|ZP_01820621.1| DNA gyrase subunit A [Streptococcus pneumoniae SP6-BS73] gi|147925219|gb|EDK76298.1| DNA gyrase subunit A [Streptococcus pneumoniae SP6-BS73] Length = 822 Score = 416 bits (1068), Expect = e-114, Method: Compositional matrix adjust. Identities = 256/706 (36%), Positives = 413/706 (58%), Gaps = 38/706 (5%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 ++N+ V+L ++ ++ YA+S I RA+PD+RDG KPVHRRI++ M+E+G+ K Sbjct: 3 DKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHK 62 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSARI G+V+GK HPHGD S+Y+++VR+AQ + RY L+ G GNFG++DGDSAAA RYTE Sbjct: 63 KSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYTE 122 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 ARM+++A +L+ ++++ VDF D Y+ + EP+V P++FPNLL NG +GIAVGMAT+IP Sbjct: 123 ARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIPP 182 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E + ++DNPE++ + L+E + GPDFPTG +++ + I ++Y G+G +R Sbjct: 183 HNLGETIDVVKLVMDNPEVTTKDLMEVLPGPDFPTGALVM-GKSGIHKAYETGKGSIVLR 241 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312 +R +E G IVVTE PY V K+++ E I L+ KRI + +RDES E VR V Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 + K R ++++ ++F ++ M+T F NM + G +P+++ L IL ++ H++EV+ Sbjct: 302 IEVK-RDASANVILNNLFKMTQMQTNFGFNMLAIQNG-IPKILSLRQILDAYIEHQKEVV 359 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVD 429 RR+ F + + R IL+GLLIA +IDE+I IIR + + + ++S+F L+E Q Sbjct: 360 VRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSKFKLSERQSQ 419 Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489 AIL++RLR L LE +I+SE D+LLA + +L ++ I E+ EVK FS Sbjct: 420 AILDMRLRRLTGLERDKIQSEYDDLLALIADLADILAKPERVSQIIKDELDEVKRKFSD- 478 Query: 490 TDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSL--------KSHSVDL 540 +RRT E+ +L+ + +IE+ + + +SNRG+I+ L K + Sbjct: 479 ----KRRT---ELMVGQILSLEDEDLIEESDVLITLSNRGYIKRLDQDEFTAQKRGGRGV 531 Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS-GR-GHGEAIQLLIDLNH 598 K+ D ++ + T D +L + G+ Y L + GR G + L+ L+ Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDE 591 Query: 599 NQDIVTAFVYDS----TCKLLVVSSKGNAFIVEESEI--IANTRK-GKTFLKVSSEEKMK 651 ++ I T +S L + G IV+ + + AN R+ G L + E+++ Sbjct: 592 DESIQTVINVESDRSDDAYLFFTTRHG---IVKRTSVKEFANIRQNGLKALNLKDEDELI 648 Query: 652 LVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSR-GKGVRLQSYKDG 695 V+ GD ++G + F+ + MSR GV+ + ++G Sbjct: 649 NVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMSRIATGVKGVNLREG 694 >gi|164430470|gb|ABY55552.1| GyrA [Shigella boydii] Length = 683 Score = 416 bits (1068), Expect = e-114, Method: Compositional matrix adjust. Identities = 256/659 (38%), Positives = 381/659 (57%), Gaps = 65/659 (9%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + V++ L+ YL YA+S I RA+PD+RDG KPVHRR+++AM+ +G D+ A+KKSA Sbjct: 1 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 60 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG+IDGDSAAA RYTE R+ Sbjct: 61 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 120 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 ++A ++ ++++ VDF D Y+ + P V P+K PNLL NG+SGIAVGMAT+IP HN+ Sbjct: 121 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 180 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ LA ID+ +ISIE L+E+I GPDFPT II R I E+YR GRG +RAR Sbjct: 181 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAII-NGRRGIEEAYRTGRGKVYIRARA 239 Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314 VE + G I+V EIPYQV K+RLIEKIAEL+ KR+ + +RDES +D +RIV+ Sbjct: 240 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 299 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K ++ ++++ +++ + ++ F +NM L G+ P++M L I+ ++ HRREV+ R Sbjct: 300 VKRDAVG-EVVLNNLYSQTQLQVSFGINMVALHHGQ-PKIMNLKDIIAAFVRHRREVVTR 357 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----------- 420 R+ F ++ R IL+ L +A NID II +IR+ P K +V+ Sbjct: 358 RTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAML 417 Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457 + LTE Q AIL+LRL+ L LE ++ E LL + Sbjct: 418 ERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQ 477 Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517 ++ +L S + I E+ V+E F G +R T + AD + +I + Sbjct: 478 IAELLRILGSADRLMEVIREELELVREQF------GDKRRTEITANSADINL--EDLITQ 529 Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569 E + V +S++G+++ + + SA KE D + L A+T D IL S+ Sbjct: 530 EDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSR 589 Query: 570 GKAYTLPAGNLLSG-RG-HGEAIQLLIDLNHNQDIVTAFV----YDSTCKLLVVSSKGN 622 G+ Y++ L RG G I L+ L ++ I TA + ++ K+ + ++ G Sbjct: 590 GRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERI-TAILPVTEFEEGVKVFMATANGT 647 >gi|194016311|ref|ZP_03054925.1| DNA gyrase, A subunit [Bacillus pumilus ATCC 7061] gi|194011784|gb|EDW21352.1| DNA gyrase, A subunit [Bacillus pumilus ATCC 7061] Length = 833 Score = 416 bits (1068), Expect = e-113, Method: Compositional matrix adjust. Identities = 248/696 (35%), Positives = 400/696 (57%), Gaps = 48/696 (6%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 NV+ V++ + +L YA+S I RA+PD+RDG KPVHRRI++AM+++G+ FKKS Sbjct: 8 NVREVNISQEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPFKKS 67 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 ARIVGEVIGK HPHGD +VY+++VR+AQ F RY L+ G GNFG++DGD AAA RYTEAR Sbjct: 68 ARIVGEVIGKYHPHGDSAVYEAMVRMAQDFNYRYMLVDGHGNFGSVDGDGAAAMRYTEAR 127 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 +++++ IL+ + +D +D++D Y+ + EP+V P++FPNLL NG +GIAVGMAT+IP H Sbjct: 128 LSKISMEILRDITKDTIDYQDNYDGSEREPMVMPARFPNLLVNGATGIAVGMATNIPPHQ 187 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 + E+ + LA+ NPE++ ++L++ I GPDFPT G I+ R I ++Y GRG +RA+ Sbjct: 188 LGEVIDGVLAISQNPEMTTQELMDIIPGPDFPTAGQII-GRSGIRKAYETGRGSITLRAK 246 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315 +EE G IV+ EIPYQV K+RLIEKIA+L+ K+I + D+RDES + ++ Sbjct: 247 SDIEETSSGKQRIVINEIPYQVNKARLIEKIADLVRDKKIDGITDLRDESDRNGMRIVIE 306 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 R + +L+ +++ + ++T F +N+ L G+ P+V+ L L+ +L H++ ++ RR Sbjct: 307 LRRDANVHVLLNNLYKQTTLQTSFGINLLALVDGQ-PKVLSLKQCLEYYLEHQKVIIRRR 365 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVDAIL 432 +++ ++ + R IL+GL IA ++DE+IA+IR + ++ +SL+E Q AIL Sbjct: 366 TAYELRKAEARAHILEGLRIALDHLDEVIALIRGSQTAEIARNGLMENYSLSEKQAQAIL 425 Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492 ++RL+ L LE +I+ E L+ ++ ++L ++ I E+ E+KE F+ + Sbjct: 426 DMRLQRLTGLEREKIEDEYKGLVDLIAELKAILADNEKVLEIIREELIEIKERFNDT--- 482 Query: 493 GRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWI--------RSLKSHSVDLSAL 543 RRT E+ A T++ + +I E I + +++ G+I RS K + + Sbjct: 483 --RRT---EIVTAGIETIEDEDLIPVENIVITLTHNGYIKRLPASTYRSQKRGGKGVQGM 537 Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLLSGRGHGE 588 E D ++ + T D IL S GK Y +P NLL GE Sbjct: 538 GTNEDDFVEQLISTSTHDTILFFSNKGKVYRAKGYEIPEFGRTAKGIPIINLLEVE-KGE 596 Query: 589 AIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE 648 I +I ++ +D L + G + S+ G L + E+ Sbjct: 597 WINAIIPVSE---------FDENSYLFFTTRHGVSKRTTLSQFANIRNNGLIALSLRDED 647 Query: 649 KMKLVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSR 683 ++ V G+ ++G + +LI F+ + EM R Sbjct: 648 ELMAVRLTNGEKQIIIGTKKGMLIRFAETDVREMGR 683 >gi|311032262|ref|ZP_07710352.1| DNA gyrase subunit A [Bacillus sp. m3-13] Length = 830 Score = 416 bits (1068), Expect = e-113, Method: Compositional matrix adjust. Identities = 229/575 (39%), Positives = 360/575 (62%), Gaps = 32/575 (5%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 +VK +++ ++ +L YA+S I RA+PD+RDG KPVHRRI++AM+++G+ A+KKS Sbjct: 6 SVKEINISQEMKTSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTADKAYKKS 65 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 ARIVGEVIGK HPHGD +VYD++VR+AQ F RY LI G GNFG++DGD+AAA RYTEAR Sbjct: 66 ARIVGEVIGKYHPHGDSAVYDTMVRMAQDFNFRYMLIDGHGNFGSVDGDAAAAMRYTEAR 125 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 M++++ IL+ +++D +D++D Y+ + EPVV P++FPNLL NG SGIAVGMAT+IP H Sbjct: 126 MSKISMEILRDINKDTIDYQDNYDGSEREPVVLPARFPNLLVNGASGIAVGMATNIPPHQ 185 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 + EI + LA+ +P+I+I +L+E I GPDFPT G I+ R I +Y GRG VRA+ Sbjct: 186 LGEIIDGVLAVSKDPDITIPELMEIIPGPDFPTAGQIL-GRSGIRRAYETGRGSITVRAK 244 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314 +E G I+V E+PYQV K++LIEKIA+L+ K+I + D+RDES + +RIV+ Sbjct: 245 VEIETKPNGREVILVHELPYQVNKAKLIEKIADLVRDKKIEGISDLRDESDRNGMRIVME 304 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K + + ++L+ +++ + ++T F +N+ L G P+V+ L L +L H++ V+ R Sbjct: 305 VK-KDANANVLLNNLYKQTSLQTSFGINLLALVNGE-PKVLNLKQCLYYYLEHQKVVIKR 362 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAI 431 R++F ++ + R IL+GL IA ++D +I +IR+ D + +++ FSL+E Q AI Sbjct: 363 RTAFELRKAEARAHILEGLRIALDHLDAVITLIRSSQTADIAREGLMTEFSLSEKQAQAI 422 Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491 L++RL+ L LE +I+ E L+ ++ ++L ++ I E+ EVKE F+ + Sbjct: 423 LDMRLQRLTGLEREKIEEEYQGLMQLIAELKAILADEEKVLEIIREELTEVKERFNDT-- 480 Query: 492 LGRRRTT-----FCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSV 538 RRT F + D +I ++ + + +++ G+I RS + Sbjct: 481 ---RRTEIMVGGFENIEDED-------LIPRQNVVITLTHNGYIKRLPLSTYRSQRRGGR 530 Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573 + + E D ++ L T D +L + GK Y Sbjct: 531 GIQGMGTNENDFVEHLLTTSTHDTLLFFTNKGKVY 565 >gi|146340928|ref|YP_001205976.1| DNA gyrase subunit A [Bradyrhizobium sp. ORS278] gi|146193734|emb|CAL77751.1| DNA gyrase, subunit A, type II topoisomerase [Bradyrhizobium sp. ORS278] Length = 916 Score = 416 bits (1068), Expect = e-113, Method: Compositional matrix adjust. Identities = 241/633 (38%), Positives = 353/633 (55%), Gaps = 59/633 (9%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 +++ VS+ ++ YL YA+S I RA+PD RDG KPVHRRI++ M E G ++ ++KS Sbjct: 17 DIRPVSILDEMKRSYLDYAMSVIVARALPDARDGLKPVHRRILYGMYENGFEWNKPYRKS 76 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 AR VG+VIGK HPHGDQSVY +LVR+AQ F R PLI GQGNFG++DGD AA RYTE+R Sbjct: 77 ARTVGDVIGKYHPHGDQSVYGALVRMAQDFSMRVPLIDGQGNFGSVDGDMPAAMRYTESR 136 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 +T++A+ +L +D+D VDF+ Y+ + EP V P+KFPNLL NG GIAVGMAT+IP HN Sbjct: 137 LTKIAQSLLDDLDKDTVDFQPNYDSSEKEPSVLPAKFPNLLVNGAGGIAVGMATNIPPHN 196 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 + E+ +A +AL DNP +SI++L + I GPDFPTGGII+ R I +Y GRG +R + Sbjct: 197 LGEVIDACIALTDNPALSIDELNQIIPGPDFPTGGIIL-GRAGIRSAYHTGRGSIVMRGK 255 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315 ++ + + I++TEIPYQV K+ ++E+IAEL+ K+I + D+RDES D V+ Sbjct: 256 VTIDTIRKDREAILITEIPYQVNKASMVERIAELVREKKIEGISDLRDESDRDGFRVVVE 315 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 R PD+++ ++ + ++T F NM L GR PQ M L +L+ ++A R +V+ RR Sbjct: 316 LKRDAVPDVVLNQLYKFTPLQTNFGANMVALDGGR-PQTMNLKDLLQVFVAFREQVVTRR 374 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---------------------- 413 + F + R IL GL IA NIDEII +IR P Sbjct: 375 TKFLLNKARDRAHILVGLAIAVANIDEIIRVIRTSPDPNTARETLMSRDWPAQDVAAMIT 434 Query: 414 ---------KPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSL 464 P +R SL Q AIL+LRL+ L L +I ELD L E + Sbjct: 435 LIDDPRHRINPDGTARLSL--EQAKAILDLRLQRLTALGREEISDELDKLAVEIADYLDI 492 Query: 465 LNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVI 524 L S + + + E+ +K F+ RRT E + + +I++E + V + Sbjct: 493 LRSRARVQDIVKTELSAIKAEFATP-----RRTVIAE---QEGEMEDEDLIQREDMVVTV 544 Query: 525 SNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT-- 574 S+ G+ R+ + + + +E D + A T +L S+ G+ Y Sbjct: 545 SHAGYTKRVPLSAYRAQRRGGKGRTGMQTREEDFVSRLFVASTHTPVLFFSSRGQVYKEK 604 Query: 575 ---LPAGNLLSGRGHGEAIQLLIDLNHNQDIVT 604 LP + + G G+A+ ++ L + I T Sbjct: 605 VWRLP---IAAPNGRGKALINILPLEQGERITT 634 >gi|116871429|ref|YP_848210.1| DNA gyrase subunit A [Listeria welshimeri serovar 6b str. SLCC5334] gi|116740307|emb|CAK19425.1| DNA gyrase subunit A [Listeria welshimeri serovar 6b str. SLCC5334] Length = 842 Score = 416 bits (1068), Expect = e-113, Method: Compositional matrix adjust. Identities = 228/571 (39%), Positives = 355/571 (62%), Gaps = 22/571 (3%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 + + ++L + +L YA+S I RA+PD+RDG KPVHRRI++AM+++G+ A+KK Sbjct: 7 QRITEINLNKEMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYAMNDLGMTSDKAYKK 66 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 SARIVGEVIGK HPHGD +VY ++VR+AQ F R L+ G GNFG++DGD AAA RYTEA Sbjct: 67 SARIVGEVIGKYHPHGDTAVYFTMVRMAQDFSYRNMLVDGHGNFGSVDGDMAAAMRYTEA 126 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 RM++++ +L+ +++D +D+ D Y+ + EPV+ P++FPNLL NG+SGIAVGMAT+IP+H Sbjct: 127 RMSKISMELLRDINKDTIDYADNYDGSEREPVILPARFPNLLVNGSSGIAVGMATNIPTH 186 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 ++ E+ + LAL +PEISI L+EYI GPDFPT G+I+ R I +Y GRG VR Sbjct: 187 HLGEVIDGVLALSHDPEISIRDLMEYIPGPDFPTAGMIM-GRSGIRRAYESGRGSITVRG 245 Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314 R +EE G IV+TEIPYQV K+RL+E+IAEL K+I + + DES ++ Sbjct: 246 RVDIEEKKNGKETIVITEIPYQVNKARLVERIAELAREKKIDGITSLNDESDRSGMRIVI 305 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 R + +++ ++F ++ ++T F +NM L + P+V+ L IL +L H++ V+ R Sbjct: 306 EVRRDISASVIVNNLFKMTALQTTFGINMLAL-VDNHPKVLNLKEILYYYLEHQKVVIRR 364 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAI 431 R+ F ++ + R IL+GL IA NID II +IR D K ++++F+L++ Q AI Sbjct: 365 RTEFELRKAEARAHILEGLRIALDNIDAIIKLIRGSKTSDVAKEGLMTQFNLSDKQAQAI 424 Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491 L++RL+ L LE +I+ E NL+A + ++L ++ I E+ E+K ++ Sbjct: 425 LDMRLQRLTGLEREKIEEEYQNLVALINDLKAILADDERILEIIREELEEIKVKYAD--- 481 Query: 492 LGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWI--------RSLKSHSVDLSA 542 +RRT E+ D +L+ + +I +E + + ++ RG+I RS + + Sbjct: 482 --KRRT---EILAGDLVSLEDEDLIPEEEVAITLTKRGYIKRLPLSTYRSQRRGGRGIQG 536 Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573 + E D ++ + T D +L + GK Y Sbjct: 537 MSTHEDDFVEHLVATSTHDTLLFFTNTGKVY 567 >gi|309702541|emb|CBJ01868.1| DNA gyrase subunit A [Escherichia coli ETEC H10407] Length = 875 Score = 416 bits (1068), Expect = e-113, Method: Compositional matrix adjust. Identities = 255/659 (38%), Positives = 381/659 (57%), Gaps = 65/659 (9%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + V++ L+ YL YA+S I RA+PD+RDG KPVHRR+++AM+ +G D+ A+KKSA Sbjct: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG+IDGDSAAA RYTE R+ Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 ++A ++ ++++ VDF D Y+ + P V P+K PNLL NG+SGIAVGMAT+IP HN+ Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ LA ID+ +ISIE L+E+I GPDFPT II R I E+YR GRG +RAR Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAII-NGRRGIEEAYRTGRGKVYIRARA 246 Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314 VE + G I+V EIPYQ+ K+RLIEKIAEL+ KR+ + +RDES +D +RIV+ Sbjct: 247 EVEVDAKTGRETIIVHEIPYQINKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K ++ ++++ +++ + ++ F +NM L G+ P++M L I+ ++ HRREV+ R Sbjct: 307 VKRDAVG-EVVLNNLYSQTQLQVSFGINMVALHHGQ-PKIMNLKDIIAAFVRHRREVVTR 364 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----------- 420 R+ F ++ R IL+ L +A NID II +IR+ P K +V+ Sbjct: 365 RTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAML 424 Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457 + LTE Q AIL+LRL+ L LE ++ E LL + Sbjct: 425 ERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQ 484 Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517 ++ +L S + I E+ V+E F G +R T + AD + +I + Sbjct: 485 IAELLRILGSADRLMEVIREELELVREQF------GDKRRTEITANSADINL--EDLITQ 536 Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569 E + V +S++G+++ + + SA KE D + L A+T D IL S+ Sbjct: 537 EDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSR 596 Query: 570 GKAYTLPAGNLLSG-RG-HGEAIQLLIDLNHNQDIVTAFV----YDSTCKLLVVSSKGN 622 G+ Y++ L RG G I L+ L ++ I TA + ++ K+ + ++ G Sbjct: 597 GRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERI-TAILPVTEFEEGVKVFMATANGT 654 >gi|261340635|ref|ZP_05968493.1| DNA gyrase, A subunit [Enterobacter cancerogenus ATCC 35316] gi|288317048|gb|EFC55986.1| DNA gyrase, A subunit [Enterobacter cancerogenus ATCC 35316] Length = 878 Score = 416 bits (1068), Expect = e-113, Method: Compositional matrix adjust. Identities = 257/659 (38%), Positives = 379/659 (57%), Gaps = 65/659 (9%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + V++ L+ YL YA+S I RA+PD+RDG KPVHRR+++AM+ +G D+ A+KKSA Sbjct: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG++DGDSAAA RYTE RM Sbjct: 68 RVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRM 127 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 +++A ++ ++++ VDF D Y+ + P V P+K PNLL NG+SGIAVGMAT+IP HN+ Sbjct: 128 SKIAHELMADLEKETVDFVDNYDGTERIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNI 187 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ LA ID+ EISIE L+E+I GPDFPT II R I E+YR GRG +RAR Sbjct: 188 TEVINGCLAYIDDEEISIEGLMEHIPGPDFPTAAII-NGRRGIEEAYRTGRGKIYIRARA 246 Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314 VE + G I+V EIPYQV K+RLIEKIAEL+ KR+ + +RDES +D +RIV+ Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K ++ ++++ +++ + ++ F +NM L G+ P++M L IL ++ HRREV+ R Sbjct: 307 IKRDAVG-EVVLNNLYSQTQLQVSFGINMVALHHGQ-PKIMNLKEILSAFVRHRREVVTR 364 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----------- 420 R+ F ++ R IL+ L +A NID II +IR P K +V++ Sbjct: 365 RTIFELRKARDRAHILEALAVALANIDPIIELIRRAPTPAEAKAALVAQPWALGNVSAML 424 Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457 + LTE Q AIL+LRL+ L LE ++ E LL + Sbjct: 425 ERAGDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQ 484 Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517 + +L S + I E+ V++ F RRT E++ + +I + Sbjct: 485 IAGLLHILGSADRLMEVIREELELVRDQFGDE-----RRT---EITANSSDINIEDLINR 536 Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569 E + V +S++G+++ + + SA KE D + L A+T D IL S+ Sbjct: 537 EDVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSR 596 Query: 570 GKAYTLPAGNLL-SGRG-HGEAIQLLIDLNHNQDIVTAFV----YDSTCKLLVVSSKGN 622 G+ Y + L + RG G I L+ L N+ I TA + Y+ + + ++ G Sbjct: 597 GRLYWMKVYQLPEASRGARGRPIVNLLPLEANERI-TAILPVREYEEGVNVFMATASGT 654 >gi|326424122|ref|NP_761835.2| DNA gyrase subunit A [Vibrio vulnificus CMCP6] gi|319999505|gb|AAO11362.2| DNA gyrase, A subunit [Vibrio vulnificus CMCP6] Length = 903 Score = 416 bits (1068), Expect = e-113, Method: Compositional matrix adjust. Identities = 256/646 (39%), Positives = 380/646 (58%), Gaps = 64/646 (9%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + V++ L YL YA+S I RA+PD+RDG KPVHRR+++AM+ +G D+ +KKSA Sbjct: 8 ITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKPYKKSA 67 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG+IDGDSAAA RYTE RM Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVRM 127 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 ++A +L +D++ VD+ Y+ + P V P+K PNLL NG+SGIAVGMAT+IP HN+ Sbjct: 128 AKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ + LA I+N I+I++L++YI GPDFPT +I R+ I+++Y+ GRG +R++ Sbjct: 188 TEVIDGCLAYINNEAITIDELMDYIPGPDFPTAALI-SGRKGIIDAYKTGRGKIYMRSKA 246 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFP 315 +E G I+VTEIPYQV K+RLIEKIAEL+ K++ + +RDES +D +RIV+ Sbjct: 247 EIEVEKNGKETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVIEC 306 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 K ++ ++++ +++ + ++T F +NM L G+ P++ L +LK ++ HRREV+ RR Sbjct: 307 KRDAVG-EVVLNNLYAQTQLQTTFGINMVALDNGQ-PKLFNLKEMLKCFVDHRREVVTRR 364 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR------------ 420 + F ++ R IL+ L +A NIDEII +IRN P K +V+R Sbjct: 365 TIFELKKARDRAHILEALALALANIDEIIELIRNAATPAEAKAGLVARGWDLGNVAAMLE 424 Query: 421 ----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458 + LTE Q AIL+LRL L LE +I E LL E Sbjct: 425 SAGTDAARPDWLEPQYGIRDGQYFLTETQAQAILDLRLHKLTGLEHEKILDEYKALLDEI 484 Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518 +++ +L S ++ I E+ V++ F RRT E++ A + +I +E Sbjct: 485 KELMHILASTERLMEVIREELEMVRDAFGDV-----RRT---EITAASHDIDLEELIARE 536 Query: 519 PITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570 + V +S+ G+++ + + SA K+ D ++ L A+T D ILL ST G Sbjct: 537 DVVVTLSHEGYVKYQILSDYEAQRRGGKGKSATKMKDEDYIERLLVANTHDNILLFSTRG 596 Query: 571 KAYTLPAGNL-LSGR-GHGEAIQLLIDLNHNQDI-----VTAFVYD 609 K Y L L L+ R G+ I L+ L ++ I VT F D Sbjct: 597 KTYRLKVYQLPLASRTARGKPIVNLLPLEESERITAILPVTEFSAD 642 >gi|289433380|ref|YP_003463252.1| DNA gyrase, A subunit [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289169624|emb|CBH26158.1| DNA gyrase, A subunit [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 841 Score = 416 bits (1068), Expect = e-113, Method: Compositional matrix adjust. Identities = 227/571 (39%), Positives = 357/571 (62%), Gaps = 22/571 (3%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 + + ++L + +L YA+S I RA+PD+RDG KPVHRRI++AM+++G+ A+KK Sbjct: 7 QRITEINLNKEMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYAMNDLGMTSDKAYKK 66 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 SARIVGEVIGK HPHGD +VY ++VR+AQ F R L+ G GNFG++DGD AAA RYTEA Sbjct: 67 SARIVGEVIGKYHPHGDTAVYFTMVRMAQDFSYRNMLVDGHGNFGSVDGDMAAAMRYTEA 126 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 RM++++ +L+ +++D +D+ D Y+ + EPV+ P++FPNLL NG+SGIAVGMAT+IP+H Sbjct: 127 RMSKISMELLRDINKDTIDYADNYDGSEREPVILPARFPNLLVNGSSGIAVGMATNIPTH 186 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 ++ E+ + LAL ++P+ISI +L+EYI GPDFPT G+I+ R I +Y GRG VR Sbjct: 187 HLGEVIDGVLALSNDPDISIRELMEYIPGPDFPTAGMIM-GRSGIRRAYESGRGSITVRG 245 Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314 R +EE G IV+TEIPYQV K+RL+E+IAEL K+I + + DES ++ Sbjct: 246 RVDIEEKKNGKETIVITEIPYQVNKARLVERIAELAREKKIDGITSLNDESDRSGMRIVI 305 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 R + +++ ++F ++ ++T F +NM L + P+V+ L IL +L H++ V+ R Sbjct: 306 EVRRDISASVIVNNLFKMTALQTTFGINMLAL-VDNHPKVLNLKEILYYYLEHQKVVIRR 364 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAI 431 R+ F ++ + R IL+GL IA NID II +IR D K ++++F+L++ Q AI Sbjct: 365 RTEFELRKAEARAHILEGLRIALDNIDAIIKLIRGSKTSDVAKEGLMTQFNLSDKQAQAI 424 Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491 L++RL+ L LE +I+ E NL+A + ++L ++ I E+ E+K ++ Sbjct: 425 LDMRLQRLTGLEREKIEEEYQNLVALINDLKAILADDERILEIIREELEEIKVKYAD--- 481 Query: 492 LGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWI--------RSLKSHSVDLSA 542 +RRT E+ D +L+ + +I +E + + ++ RG+I RS + + Sbjct: 482 --KRRT---EILAGDLVSLEDEDLIPEEEVAITLTKRGYIKRLPLSTYRSQRRGGRGIQG 536 Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573 + E D ++ + T D +L + GK Y Sbjct: 537 MSTHEDDFVEHLVATSTHDTLLFFTNTGKVY 567 >gi|57233707|ref|YP_182324.1| DNA gyrase, A subunit [Dehalococcoides ethenogenes 195] gi|57224155|gb|AAW39212.1| DNA gyrase, A subunit [Dehalococcoides ethenogenes 195] Length = 809 Score = 416 bits (1068), Expect = e-113, Method: Compositional matrix adjust. Identities = 243/665 (36%), Positives = 386/665 (58%), Gaps = 31/665 (4%) Query: 12 LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71 +V N + +++ ++ YL YA+S I RA+PD+RDG KPV RRI++AM+++G+ Sbjct: 1 MVTGNTRPINIEEEMKGSYLDYAMSVIVSRALPDVRDGLKPVQRRILYAMNDLGMKHNTP 60 Query: 72 FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131 +KKSARIVGEV+GK HPHGD SVYD++VR+AQPF RYPL+ GQGNFG++D D AA RY Sbjct: 61 YKKSARIVGEVLGKYHPHGDSSVYDAMVRMAQPFSYRYPLVDGQGNFGSVDNDPPAAMRY 120 Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191 TEAR+ Q+AE +L +D++ VDF ++ EP V P++ PNLL NG+SGIAVGMAT+I Sbjct: 121 TEARLAQIAEQLLTDIDKNTVDFMPNFDASLEEPTVLPARIPNLLMNGSSGIAVGMATNI 180 Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251 P HN+ E+C+A LIDNP+ ++ L++++ GPDFPTGG I+ + + I +Y G+G Sbjct: 181 PPHNLAELCQAICYLIDNPDCGVDDLMQFVSGPDFPTGGTILGT-DGIKSAYATGKGKIV 239 Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311 ++A+ + EV I VTEIPYQV K+ L+ KIAEL+ ++I + D+RDES Sbjct: 240 IQAKAHIGEVD-NRKAIFVTEIPYQVNKAELVVKIAELVKDRKIVGISDLRDESDRQGMR 298 Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371 V+ R +P ++ S++ ++M T F +NM L G+ PQV+ L +LK ++ R + Sbjct: 299 VVIELKRDAEPQQVLNSLYKHTNMRTSFFVNMLALVDGQ-PQVLSLKEVLKNFIDFRHLI 357 Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQV 428 + RRS F ++A R IL+GL A ID IIAIIRN D + +V+ F + Q Sbjct: 358 ITRRSQFELKAAKDRAHILEGLKKALDFIDRIIAIIRNSENGDTARKNLVAEFDFSVIQA 417 Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488 AIL+L+LR L LE +I E L+ ++ LL+ ++ + + + +++K + Sbjct: 418 QAILDLQLRRLANLERQKILDEYAELMKRIGYLEDLLSHPEKIYALVKEDAKDLKGSY-- 475 Query: 489 STDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSLKSHSVDLS------ 541 G+ R T E+S + + ++ + V +S RG+I+ + ++ L Sbjct: 476 ----GQPRAT--EISSQGVIEFRVEDLVPHMDVIVTLSERGFIKRVPANVFRLQHRGGTG 529 Query: 542 --ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL---LSGRGHGEAIQLLIDL 596 + +E D+++ + T D +L + GK ++L ++ S G AI LI + Sbjct: 530 IMGMPTREADAVRFLSVSDTHDTLLFFTNRGKVFSLRCFDIPDDASRIAKGTAIVNLIPV 589 Query: 597 NHNQDIVTAFV----YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652 ++ I TA + + + LL+ ++KG E A G + +++ +++ Sbjct: 590 TQDERI-TAILDLKSFPADHFLLMATNKGEIKKTSLQEFTAVRSSGLIAMDLATSDELVA 648 Query: 653 VVKVT 657 V+ T Sbjct: 649 AVETT 653 >gi|238809855|dbj|BAH69645.1| hypothetical protein [Mycoplasma fermentans PG18] Length = 854 Score = 416 bits (1068), Expect = e-113, Method: Compositional matrix adjust. Identities = 222/525 (42%), Positives = 342/525 (65%), Gaps = 16/525 (3%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 ++ + V + ++ +L YA+S I RA+PD RDG KPVHRRI+ M+E+G+ FG+ + Sbjct: 89 KDGIHPVEVHKEMKNSFLEYAMSVIVSRALPDARDGLKPVHRRILFDMNELGITFGSQHR 148 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSARIVG+V+GK HPHGD SVY+++VR+AQ F RYPL+ G GNFG+IDGD AAA RYTE Sbjct: 149 KSARIVGDVLGKYHPHGDSSVYEAMVRMAQDFSMRYPLVDGHGNFGSIDGDEAAAMRYTE 208 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 ARM+++A +L+G+ +D VDF D Y+ + EP V PS+FPNLL +G SGIAVGMATSIP Sbjct: 209 ARMSKLAAEMLEGIKKDTVDFVDNYDASEKEPSVLPSRFPNLLVSGGSGIAVGMATSIPP 268 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E +A +AL +NPEI I L+E++ GPDFPTG +I+ I ++Y G+G +R Sbjct: 269 HNLGETIDATIALANNPEIDIYGLMEFLPGPDFPTGAMIL-GNAGIKDAYLTGKGSIPIR 327 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312 + +EE G I+VTEIPY+V+K+ +IEKIAEL+ K+I + D+RDES+ E +RIV Sbjct: 328 SIAKIEEYSNGKSKIIVTEIPYEVKKTAIIEKIAELVKDKQIEGIADLRDESSREGIRIV 387 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 + K ++++P +L+ ++ ++++ + +N L G P+V+ L L+ +L H+ EV+ Sbjct: 388 IDVK-KNVNPHVLLNKLYRQTNLQVNYNVNFVALVDGE-PKVLNLKQALEVYLRHQEEVV 445 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAII---RNEDKPKPVMVSRFSLTENQVD 429 RR F + R+ IL+GL IA NIDE+IAII + + + + + RF+LTE Q Sbjct: 446 TRRLKFDLIKAQDRLHILEGLKIAVENIDEVIAIIKKSKTDGEAQANLAKRFNLTEKQTK 505 Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489 AI+++RL L L + E+ L E E+I+ +L + + I E+ E+KE ++ Sbjct: 506 AIVDMRLGRLTGLAIENMLEEMAELRKEIERIEFILANHSELIKLIVKELTEIKEKYND- 564 Query: 490 TDLGRRRTTFCEVSRADKATL-QQAMIEKEPITVVISNRGWIRSL 533 +RRT +++ + T+ + +I + I + S +G+++ + Sbjct: 565 ----KRRT---QINYEIQGTITDEDLIPQRDIVITTSAKGFVKRM 602 >gi|330912061|gb|EGH40571.1| DNA gyrase subunit A [Escherichia coli AA86] Length = 875 Score = 416 bits (1068), Expect = e-113, Method: Compositional matrix adjust. Identities = 256/659 (38%), Positives = 381/659 (57%), Gaps = 65/659 (9%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + V++ L+ YL YA+S I RA+PD+RDG KPVHRR+++AM+ +G D+ A+KKSA Sbjct: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG+IDGDSAAA RYTE R+ Sbjct: 68 RVVGDVIGKYHPHGDLAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 ++A ++ ++++ VDF D Y+ + P V P+K PNLL NG+SGIAVGMAT+IP HN+ Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ LA ID+ +ISIE L+E+I GPDFPT II R I E+YR GRG +RAR Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAII-NGRRGIEEAYRTGRGKVYIRARA 246 Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314 VE + G I+V EIPYQV K+RLIEKIAEL+ KR+ + +RDES +D +RIV+ Sbjct: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K ++ ++++ +++ + ++ F +NM L G+ P++M L I+ ++ HRREV+ R Sbjct: 307 VKRDAVG-EVVLNNLYSQTQLQVSFGINMVALHHGQ-PKIMNLKDIIAAFVRHRREVVTR 364 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----------- 420 R+ F ++ R IL+ L +A NID II +IR+ P K +V+ Sbjct: 365 RTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAML 424 Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457 + LTE Q AIL+LRL+ L LE ++ E LL + Sbjct: 425 ERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQ 484 Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517 ++ +L S + I E+ V+E F G +R T + AD + +I + Sbjct: 485 IAELLRILGSADRLMEVIREELELVREQF------GDKRRTEITANSADINL--EDLITQ 536 Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569 E + V +S++G+++ + + SA KE D + L A+T D IL S+ Sbjct: 537 EDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSR 596 Query: 570 GKAYTLPAGNLLSG-RG-HGEAIQLLIDLNHNQDIVTAFV----YDSTCKLLVVSSKGN 622 G+ Y++ L RG G I L+ L ++ I TA + ++ K+ + ++ G Sbjct: 597 GRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERI-TAILPVTEFEEGVKVFMATANGT 654 >gi|289167850|ref|YP_003446119.1| DNA gyrase, subunit A [Streptococcus mitis B6] gi|288907417|emb|CBJ22254.1| DNA gyrase, subunit A [Streptococcus mitis B6] Length = 822 Score = 416 bits (1068), Expect = e-113, Method: Compositional matrix adjust. Identities = 227/575 (39%), Positives = 359/575 (62%), Gaps = 24/575 (4%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 + N+ V+L ++ ++ YA+S I RA+PD+RDG KPVHRRI++ M+E+G+ K Sbjct: 3 DRNLVNVNLTKEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHK 62 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSARI G+V+GK HPHGD S+Y+++VR+AQ + RY L+ G GNFG++DGD AAA RYTE Sbjct: 63 KSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYTE 122 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 ARM+++A +L+ ++++ VDF D Y+ + EP+V P++FPNLL NG +GIAVGMAT+IP Sbjct: 123 ARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIPP 182 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E +A ++DNPE++ + L+E + GPDFPTG +++ + I ++Y G+G +R Sbjct: 183 HNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVM-GKSGIHKAYETGKGSIVLR 241 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312 +R +EE G IVVTE PY V K+++ E I L+ KRI + +RDES E VR V Sbjct: 242 SRTEIEETKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 + K R ++++ ++F ++ M+T F NM + G VP+++ L IL ++ H++EV+ Sbjct: 302 IEVK-RDASANVILNNLFKMTQMQTNFGFNMLAIQNG-VPKILSLRQILDAYIEHQKEVV 359 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVD 429 RR+ F + + R IL+GLLIA +IDE+I IIR +++ + ++S+F L+E Q Sbjct: 360 VRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDEEAQAELMSKFKLSERQSQ 419 Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489 AIL++RLR L LE +I+SE D+LLA + +L ++ I E+ EVK F Sbjct: 420 AILDMRLRRLTGLERDKIQSEYDDLLALIADLADILAKPERVSQIIKDELDEVKRKFGD- 478 Query: 490 TDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSL--------KSHSVDL 540 +RRT E+ + +L+ + +IE+ + + +SN+G+I+ L K + Sbjct: 479 ----QRRT---ELMVGEVLSLEDEDLIEESDVLITLSNKGYIKRLDQAEFTAQKRGGRGV 531 Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575 K+ D ++ + T D +L + G+ Y L Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRL 566 >gi|148560594|ref|YP_001259021.1| DNA gyrase subunit A [Brucella ovis ATCC 25840] gi|148371851|gb|ABQ61830.1| DNA gyrase, A subunit [Brucella ovis ATCC 25840] Length = 934 Score = 415 bits (1067), Expect = e-113, Method: Compositional matrix adjust. Identities = 256/694 (36%), Positives = 383/694 (55%), Gaps = 61/694 (8%) Query: 2 GVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61 G D+++ ++ +S+ ++ YL YA+S I RA+PD+RDG KPVHRRI+HAM Sbjct: 9 GSDDMNGGPNGGPSGIEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAM 68 Query: 62 SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121 +EM L + ++KSA +VGEV+GK HPHGD S+YD+LVR+AQ F R PLI GQGNFG+I Sbjct: 69 NEMNLAYNRPYRKSAGVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLIDGQGNFGSI 128 Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181 DGD AA RYTE R+ +V E +L +D+D V+F+D Y+ + EPVV P++FPNLL NG+ Sbjct: 129 DGDPPAAMRYTECRLEKVTESLLSDIDKDTVNFQDNYDGREQEPVVLPARFPNLLVNGSG 188 Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241 GIAVGMAT+IP HN+ E+ + +ALIDNP I + +L+E I GPDFPTGGII+ R I Sbjct: 189 GIAVGMATNIPPHNLGEVIDGCVALIDNPAIELSELMELIPGPDFPTGGIIL-GRNGINS 247 Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301 +Y G G +R R +E + I++TEIPYQV K+ +IEK+AEL+ KRI + D+ Sbjct: 248 AYTTGHGSVIMRGRATIEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKRIDGISDL 307 Query: 302 RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361 RDES + V+ R D+++ ++ + ++T F NM L+ G+ Q+ LD +L Sbjct: 308 RDESDREGYRVVVELKRDAVADVVLNQLYRYTPLQTSFGCNMVALNGGKPEQLTLLD-ML 366 Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP----KPVM 417 + ++A R EV+ RR+ F + R +L GL IA NIDE+IA+IR P + +M Sbjct: 367 RAFVAFREEVVTRRTKFLLNKARDRAHVLVGLAIAVANIDEVIALIRRAPDPATAREQLM 426 Query: 418 VSR-------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELD 452 R ++L+E Q AIL+LRL+ L L ++ EL+ Sbjct: 427 ERRWPAVDVAPLIRLIDDPRHTLNEDNTYNLSEEQARAILDLRLQRLTALGRDEVADELN 486 Query: 453 NLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ 512 + E +L S + N + E+ V++ F+ RRT E+ + Sbjct: 487 KIGEEIRDYLDILGSRLRVMNIVKEEMIAVRDEFATP-----RRT---EIGFGGAEMDDE 538 Query: 513 AMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRIL 564 +I +E + V +S+ G+I R+ + S + KE D + A+T +L Sbjct: 539 DLIAREDMVVTVSHAGYIKRVPLTTYRAQRRGGKGRSGMATKEEDFVTRLFVANTHTPVL 598 Query: 565 LLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY----DSTCKLL 615 S+ G K + LP G S G+A+ ++ L + I T DS L Sbjct: 599 FFSSRGIVYKEKVWRLPVGTPQS---RGKALINMLPLQQGERITTIMPLPEDEDSWANLD 655 Query: 616 VV--SSKGNAFIVEESEIIANTRKGKTFLKVSSE 647 V+ +++G + S+ + R GK +K+ E Sbjct: 656 VMFSTTRGTVRRNKLSDFVQVNRNGKIAMKLEDE 689 >gi|307706659|ref|ZP_07643466.1| DNA gyrase, A subunit [Streptococcus mitis SK321] gi|307618114|gb|EFN97274.1| DNA gyrase, A subunit [Streptococcus mitis SK321] Length = 822 Score = 415 bits (1067), Expect = e-113, Method: Compositional matrix adjust. Identities = 236/611 (38%), Positives = 371/611 (60%), Gaps = 40/611 (6%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 + N+ V+L ++ ++ YA+S I RA+PD+RDG KPVHRRI++ M+E+G+ K Sbjct: 3 DRNLVNVNLTKEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHK 62 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSARI G+V+GK HPHGD S+Y+++VR+AQ + RY L+ G GNFG++DGD AAA RYTE Sbjct: 63 KSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYTE 122 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 ARM+++A +L+ ++++ VDF D Y+ + EP+V P++FPNLL NG +GIAVGMAT+IP Sbjct: 123 ARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIPP 182 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E +A ++DNPE++ + L+E + GPDFPTG +++ + I ++Y G+G +R Sbjct: 183 HNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVM-GKSGIHKAYETGKGSIVLR 241 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312 +R +EE G IVVTE PY V K+++ E I L+ KRI + +RDES E VR V Sbjct: 242 SRTEIEETKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 + K R ++++ ++F ++ M+T F NM + G VP+++ L IL ++ H++EV+ Sbjct: 302 IEVK-RDASANVILNNLFKMTQMQTNFGFNMLAIQNG-VPKILSLRQILDAYIEHQKEVV 359 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVD 429 RR+ F + + R IL+GLLIA +IDE+I IIR + + + ++S+F L+E Q Sbjct: 360 VRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSKFKLSERQSQ 419 Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489 AIL++RLR L LE +I+SE D+LLA + +L ++ I E+ EVK F Sbjct: 420 AILDMRLRRLTGLERDKIQSEYDDLLALIADLADILAKPERVSQIIKDELDEVKRKFGD- 478 Query: 490 TDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSL--------KSHSVDL 540 +RRT E+ + +L+ + +IE+ + + +SN+G+I+ L K + Sbjct: 479 ----QRRT---ELMVGEVLSLEDEDLIEETDVLITLSNKGYIKRLDQAEFTAQKRGGRGV 531 Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLLSGRG 585 K+ D ++ + T D +L + G+ Y LP NLL Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPIVNLLK-LD 590 Query: 586 HGEAIQLLIDL 596 GE+IQ +I++ Sbjct: 591 EGESIQTIINV 601 >gi|270308878|ref|YP_003330936.1| DNA gyrase, A subunit [Dehalococcoides sp. VS] gi|270154770|gb|ACZ62608.1| DNA gyrase, A subunit [Dehalococcoides sp. VS] Length = 809 Score = 415 bits (1067), Expect = e-113, Method: Compositional matrix adjust. Identities = 241/665 (36%), Positives = 388/665 (58%), Gaps = 31/665 (4%) Query: 12 LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71 +V N + +++ ++ YL YA+S I RA+PD+RDG KPV RRI++AM+++G+ Sbjct: 1 MVTGNTRPINIEDEMKGSYLDYAMSVIVSRALPDVRDGLKPVQRRILYAMNDLGMKHNTP 60 Query: 72 FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131 +KKSARIVGEV+GK HPHGD SVYD++VR+AQPF RYPL+ GQGNFG++D D AAA RY Sbjct: 61 YKKSARIVGEVLGKYHPHGDSSVYDAMVRMAQPFSYRYPLVDGQGNFGSVDNDPAAAMRY 120 Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191 TEAR+ Q+AE +L +D++ VDF ++ EP V P++ PNLL NG+SGIAVGMAT+I Sbjct: 121 TEARLAQIAEQLLTDIDKNTVDFMPNFDSSLEEPTVLPARIPNLLMNGSSGIAVGMATNI 180 Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251 P HN+ E+C+A LIDNP+ +++L++++ GPDFPTGG I+ + + I +Y G+G Sbjct: 181 PPHNLAELCQAICYLIDNPDCGVDELMQFVSGPDFPTGGTILGT-DGIKSAYATGKGKIV 239 Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311 ++A+ + EV I VTEIPYQV K+ L+ KIAEL+ +++ + D+RDES Sbjct: 240 IQAKAHIGEVD-NRKAIFVTEIPYQVNKAELVAKIAELVKDRKLVGISDLRDESDRQGMR 298 Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371 V+ R +P ++ S++ ++M T F +NM L G+ PQV+ L +LK ++ R + Sbjct: 299 VVIELKRDAEPQQVLNSLYKHTNMRTSFFVNMLALVDGQ-PQVLSLKEVLKNFIDFRHLI 357 Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQV 428 + RRS F ++A R IL+GL A ID IIAIIR N D + +++ F + Q Sbjct: 358 ITRRSQFELKAAKDRAHILEGLKKALDFIDRIIAIIRSSENGDTARKNLMAEFDFSAIQA 417 Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488 AIL+L+LR L LE +I E L+ ++ LL+ ++ + + + ++++ + Sbjct: 418 QAILDLQLRRLANLERQKILDEYAELMKRIGYLEDLLSHPEKIYALVKEDAKDLRGSY-- 475 Query: 489 STDLGRRRTTFCEVSRADKATL-QQAMIEKEPITVVISNRGWIRSLKSHSVDLS------ 541 G+ R T E+S ++ ++ + V +S RG+I+ + ++ L Sbjct: 476 ----GQPRAT--EISNQGVIEFREEDLVPHMDVIVTLSERGFIKRVPANVFRLQHRGGTG 529 Query: 542 --ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL---LSGRGHGEAIQLLIDL 596 + +E D+++ + T D +L + GK ++L ++ S G AI LI + Sbjct: 530 IMGMPTREADAVRFLSVSDTHDTLLFFTNRGKVFSLRCFDIPDDASRIAKGTAIVNLIPV 589 Query: 597 NHNQDIVTAFV----YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652 ++ I TA + + + LL+ ++KG E A G + +++ +++ Sbjct: 590 TQDERI-TAILDLKSFPADHFLLMATNKGEIKKTSLQEFTAVRSSGLIAMDLATSDELVA 648 Query: 653 VVKVT 657 V+ T Sbjct: 649 AVETT 653 >gi|9230555|gb|AAF85898.1| DNA gyrase A subunit [Streptococcus pneumoniae] Length = 822 Score = 415 bits (1067), Expect = e-113, Method: Compositional matrix adjust. Identities = 236/611 (38%), Positives = 371/611 (60%), Gaps = 40/611 (6%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 + N+ V+L ++ ++ YA+S I RA+PD+RDG KPVHRRI++ M+E+G+ K Sbjct: 3 DRNLVNVNLTKEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHK 62 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSARI G+V+GK HPHGD S+Y+++VR+AQ + RY L+ G GNFG++DGD AAA RYTE Sbjct: 63 KSARITGDVMGKYHPHGDYSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYTE 122 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 ARM+++A +L+ ++++ VDF D Y+ + EP+V P++FPNLL NG +GIAVGMAT+IP Sbjct: 123 ARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIPP 182 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E +A ++DNPE++ + L+E + GPDFPTG +++ + I ++Y G+G +R Sbjct: 183 HNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVM-GKSGIHKAYETGKGSIVLR 241 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312 +R +EE G IVVTE PY V K+++ E I L+ KRI + +RDES E VR V Sbjct: 242 SRTEIEETKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 + K R ++++ ++F ++ M+T F NM + G VP+++ L IL ++ H++EV+ Sbjct: 302 IEVK-RDASANVILNNLFKMTQMQTNFGFNMLAIQNG-VPKILSLRQILDAYIEHQKEVV 359 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVD 429 RR+ F + + R IL+GLLIA +IDE+I IIR + + + ++S+F L+E Q Sbjct: 360 VRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSKFKLSERQSQ 419 Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489 AIL++RLR L LE +I+SE D+LLA + +L ++ I E+ EVK F Sbjct: 420 AILDMRLRRLTGLERDKIQSEYDDLLALIADLADILAKPERVSQIIKDELDEVKRKFGD- 478 Query: 490 TDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSL--------KSHSVDL 540 +RRT E+ + +L+ + +IE+ + + +SN+G+I+ L K + Sbjct: 479 ----QRRT---ELMVGEVLSLEDEDLIEESDVLITLSNKGYIKRLDQAEFTAQKRGGRGV 531 Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLLSGRG 585 K+ D ++ + T D +L + G+ Y LP NLL Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLK-LD 590 Query: 586 HGEAIQLLIDL 596 GE+IQ +I++ Sbjct: 591 EGESIQTIINV 601 >gi|256022087|ref|ZP_05435952.1| DNA gyrase subunit A [Escherichia sp. 4_1_40B] Length = 875 Score = 415 bits (1067), Expect = e-113, Method: Compositional matrix adjust. Identities = 256/659 (38%), Positives = 381/659 (57%), Gaps = 65/659 (9%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + V++ L+ YL YA+S I RA+PD+RDG KPVHRR+++AM+ +G D+ A+KKSA Sbjct: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG+IDGDSAAA RYTE R+ Sbjct: 68 RVVGDVIGKYHPHGDLAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 ++A ++ ++++ VDF D Y+ + P V P+K PNLL NG+SGIAVGMAT+IP HN+ Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ LA ID+ +ISIE L+E+I GPDFPT II R I E+YR GRG +RAR Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAII-NGRRGIEEAYRTGRGKVYIRARA 246 Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314 VE + G I+V EIPYQV K+RLIEKIAEL+ KR+ + +RDES +D +RIV+ Sbjct: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K ++ ++++ +++ + ++ F +NM L G+ P++M L I+ ++ HRREV+ R Sbjct: 307 VKRDAVG-EVVLNNLYSQTQLQVSFGINMVALHHGQ-PKIMNLKDIIAAFVRHRREVVTR 364 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----------- 420 R+ F ++ R IL+ L +A NID II +IR+ P K +V+ Sbjct: 365 RTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAML 424 Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457 + LTE Q AIL+LRL+ L LE ++ E LL + Sbjct: 425 ERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQ 484 Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517 ++ +L S + I E+ V+E F G +R T + AD + +I + Sbjct: 485 IAELLRILGSADRLMEVIREELELVREQF------GDKRRTEITANSADINL--EDLITQ 536 Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569 E + V +S++G+++ + + SA KE D + L A+T D IL S+ Sbjct: 537 EDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSR 596 Query: 570 GKAYTLPAGNLLSG-RG-HGEAIQLLIDLNHNQDIVTAFV----YDSTCKLLVVSSKGN 622 G+ Y++ L RG G I L+ L ++ I TA + ++ K+ + ++ G Sbjct: 597 GRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERI-TAILPVTEFEEGVKVFMATANGT 654 >gi|254373410|ref|ZP_04988898.1| hypothetical protein FTCG_01000 [Francisella tularensis subsp. novicida GA99-3549] gi|151571136|gb|EDN36790.1| hypothetical protein FTCG_01000 [Francisella novicida GA99-3549] Length = 868 Score = 415 bits (1067), Expect = e-113, Method: Compositional matrix adjust. Identities = 257/736 (34%), Positives = 417/736 (56%), Gaps = 87/736 (11%) Query: 11 TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70 +++ + ++++ L++ YL YA+S I RA+PD+RDG KPVHRR++ AM+E+ + Sbjct: 2 SIITKESSSINIEKELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELSNYYNR 61 Query: 71 AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130 +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG++DGDS AA R Sbjct: 62 PYKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYTLVDGQGNFGSVDGDSPAAMR 121 Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190 YTE RM ++ +L +D++ VDF Y+ + P V P++ PNLL NG+SGIAVGMAT+ Sbjct: 122 YTEIRMEKLTHELLIDIDKETVDFSPNYDNTELVPDVLPTRVPNLLVNGSSGIAVGMATN 181 Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250 IP HN+ E+ +ALIDNP ++IE+L+EYI PDFPTG I + I+E+Y+ GRG Sbjct: 182 IPPHNMTEVINGTIALIDNPNLTIEELIEYIPAPDFPTGSYI-NGTDGILEAYKTGRGRV 240 Query: 251 RVRARWCV-EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED- 308 +RA+ + E+ G I+VTEIPYQV K++L+EKIAEL+ K++ + ++RDES +D Sbjct: 241 IMRAKADIHEDEASGKAQIIVTEIPYQVNKAKLVEKIAELVKDKKVAGISELRDESDKDG 300 Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368 +R+V+ K R P++++ +++ + ++ F +NM LS R P+++ L IL++++ HR Sbjct: 301 IRVVIDLK-RDESPEVVLNTLYAQTQLQCSFGINMVALSDNR-PKLLNLKEILEQFIKHR 358 Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----- 420 +EV+ RR+ F ++ R IL+GLL++ NIDE+I +I+ P K M++R Sbjct: 359 KEVVTRRTIFELRKSKERAHILEGLLLSLANIDEMIELIKASPSPADAKESMLARSWNGS 418 Query: 421 ------------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSE 450 ++LTE Q DAIL LRL L LE+ +I +E Sbjct: 419 MVKSMLEGVDVKMYRKETLASHYGIQVDSSYNLTEEQADAILALRLHRLTGLEQDKIVNE 478 Query: 451 LDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATL 510 L+ + + S+L+ + + E+ E+++ + G +R + SR D Sbjct: 479 FKELIDRIKYLISILSDINELIRVVKDELVEIRDNY------GDQRKSEIIESRLD--LT 530 Query: 511 QQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDR 562 ++ +I +E + V +S G++++ K V SA KE DS+ + A T D Sbjct: 531 REDLIAEEDMVVTLSMDGYVKTQPLSMYNAQKRGGVGKSATKTKEEDSIFKLMLASTHDT 590 Query: 563 ILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV----YDSTCK 613 +L S+ G K Y P + +S G I ++ L ++ I TA + ++ Sbjct: 591 MLCFSSLGRVYWSKVYDFPVASRIS---KGRPINNILPLEKDERI-TAMMPISQFNEGWY 646 Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIF 673 + + + G V+ SE GK + ++ +++ +VA+ N+++++F Sbjct: 647 VFMATKLGRVKKVDLSEFARPRSTGKIAIGLNDGDELS--------YVALTDGNKQIMMF 698 Query: 674 SIDQIPEMSRGKGVRL 689 S GK +R Sbjct: 699 S-------DAGKAIRF 707 >gi|146300339|ref|YP_001194930.1| DNA gyrase, A subunit [Flavobacterium johnsoniae UW101] gi|146154757|gb|ABQ05611.1| DNA gyrase subunit A [Flavobacterium johnsoniae UW101] Length = 879 Score = 415 bits (1067), Expect = e-113, Method: Compositional matrix adjust. Identities = 231/632 (36%), Positives = 381/632 (60%), Gaps = 40/632 (6%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 E + +++ ++ Y+ Y++S I RA+PD+RDG KPVHRR+++ M ++G+ +A KK Sbjct: 5 EKLIPINIEDEMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMYDLGVTSRSAHKK 64 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 SARIVGEV+GK HPHGD SVYD++VR+AQ + RY L+ GQGNFG++DGDS AA RYTEA Sbjct: 65 SARIVGEVLGKYHPHGDTSVYDAMVRMAQEWSMRYLLVDGQGNFGSVDGDSPAAMRYTEA 124 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 RM +++E I+ ++++ VDF+ +++ EP V P++ P LL NG +GIAVGMAT++P H Sbjct: 125 RMRKISEEIMADIEKETVDFQLNFDDTIYEPKVMPTRVPTLLVNGATGIAVGMATNMPPH 184 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 N+ E+ LA +DN +I +++L+ +I PDFPTGGII E + E+++ GRG +RA Sbjct: 185 NLTEVINGTLAYLDNNDIEVDELMTHIKAPDFPTGGIIY-GYEGVREAFKTGRGRIVMRA 243 Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314 + EEV G I+VTEIPYQV K+ +I++ A+L+ K+I + +IRDES + +++ Sbjct: 244 KVGFEEV-EGRESIIVTEIPYQVNKAEMIKRTADLVNEKKIEGIANIRDESDRNGMRIVY 302 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 R P++++ +++ + +++ F +N L GR PQ++ L ++ ++ HR +V+ R Sbjct: 303 ILKRDATPNVVLNTLYKYTQLQSSFSVNNIALVKGR-PQLLNLKDMIHYFIEHRHDVVVR 361 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAI 431 R+ F ++ + R IL+GL+IA NIDE+IA+IR N D+ + ++ RF L++ Q AI Sbjct: 362 RTQFELRKAEERAHILEGLIIASDNIDEVIALIRGSKNTDEAREKLIERFKLSDIQARAI 421 Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491 + +RLR L LE+ ++++E D L+ E + +LL + + I E+ E+++ + Sbjct: 422 VEMRLRQLTGLEQDKLRAEYDELMKLIEHLKALLADVNLRIDLIKEELTEIRDKY----- 476 Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSAL 543 G R + E S D + + +I E + + IS+ G+I ++ V + Sbjct: 477 -GDDRRSQIEYSGGDVSI--EDLIADENVVITISHAGYIKRTNLSEYKTQNRGGVGQKSA 533 Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKA-----YTLPAGNLLSGRGHGEAIQLLIDLNH 598 ++ D L+ A ++ + GK Y +P G S G AIQ LI++ Sbjct: 534 GTRDQDFLEHMFVATNHQYMMFFTQKGKCFWMRVYEIPEG---SKTAKGRAIQNLINI-E 589 Query: 599 NQDIVTAFV---------YDSTCKLLVVSSKG 621 + D V AF+ Y +T L++V+ +G Sbjct: 590 SDDKVKAFICTQDLKDKDYINTHNLVMVTKQG 621 >gi|329298018|ref|ZP_08255354.1| DNA gyrase subunit A [Plautia stali symbiont] Length = 876 Score = 415 bits (1067), Expect = e-113, Method: Compositional matrix adjust. Identities = 250/638 (39%), Positives = 371/638 (58%), Gaps = 62/638 (9%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + V++ L+ YL YA+S I RA+PD+RDG KPVHRR++ AMSE+G D+ +KKSA Sbjct: 8 IAPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELGNDWNKPYKKSA 67 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD +VY+S+VR+AQPF RY L+ GQGNFG++DGDSAAA RYTE RM Sbjct: 68 RVVGDVIGKYHPHGDSAVYESIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEVRM 127 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 +++ +L ++++ VDF Y+ + P V P+K PNLL NG+SGIAVGMAT+IP HN+ Sbjct: 128 AKISSELLADLEKETVDFVPNYDGTEQIPEVLPTKIPNLLINGSSGIAVGMATNIPPHNL 187 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ LA I++ IS+E L+E+I GPDFPT I R I E+YR GRG +RAR Sbjct: 188 TEVINGCLAFIEDENISVEGLMEHITGPDFPTAAFI-NGRRGIEEAYRTGRGKIYIRARG 246 Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314 +E + G I+V EIPYQV K+RLIEKIAEL+ KR+ + +RDES +D +RIV+ Sbjct: 247 EIETDAKTGRETIIVNEIPYQVNKARLIEKIAELVKEKRVEGISGLRDESDKDGMRIVIE 306 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K ++ ++++ +++ L+ ++ F +NM L G+ P++M L I++ ++ HRREV+ R Sbjct: 307 VKRDAVG-EVVLNNLYSLTQLQVSFGINMVALHQGQ-PKIMTLKEIIEAFVRHRREVVTR 364 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-------------------------- 408 R+ F ++ R IL+GL IA NID II +IR Sbjct: 365 RTIFELRKARDRAHILEGLAIALANIDPIIELIRRAPTPAEAKSGLLAQSWDLGNVAAML 424 Query: 409 ---NEDKPKP--------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457 +D +P + R+ LTE Q AIL+LRL+ L LE ++ E LL + Sbjct: 425 ERAGDDAARPEWLEAEFGIRDGRYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQ 484 Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ-QAMIE 516 ++ +L S ++ I E+ +++ F + RRT A+ A + + +I Sbjct: 485 IAELIHILQSAERLMEVIREELVAMRDQFGDA-----RRTEIT----ANSADINIEDLIN 535 Query: 517 KEPITVVISNRGWIRSLKSHSVDL--------SALHFKEGDSLKIALHAHTTDRILLLST 568 +E + V +S++G+++ + + SA KE D + L A+T D IL S+ Sbjct: 536 QEDVVVTLSHQGYVKYQQLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSS 595 Query: 569 DGKAYTLPAGNLL-SGRG-HGEAIQLLIDLNHNQDIVT 604 G+ Y + L + RG G I L+ L N+ I Sbjct: 596 RGRLYWMKVYQLPEASRGARGRPIVNLLPLEANERITA 633 >gi|170767272|ref|ZP_02901725.1| DNA gyrase, A subunit [Escherichia albertii TW07627] gi|170123606|gb|EDS92537.1| DNA gyrase, A subunit [Escherichia albertii TW07627] Length = 875 Score = 415 bits (1067), Expect = e-113, Method: Compositional matrix adjust. Identities = 255/659 (38%), Positives = 381/659 (57%), Gaps = 65/659 (9%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + V++ L+ YL YA+S I RA+PD+RDG KPVHRR+++AM+ +G D+ A+KKSA Sbjct: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG+IDGDSAAA RYTE R+ Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 ++A ++ ++++ VDF D Y+ + P V P+K PNLL NG+SGIAVGMAT+IP HN+ Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ LA ID+ +ISIE L+E+I GPDFPT II R I E+YR GRG +RAR Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAII-NGRRGIEEAYRTGRGKVYIRARA 246 Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314 VE + G I+V EIPYQV K+RLIEKIAEL+ KR+ + +RDES +D +RIV+ Sbjct: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K ++ ++++ +++ + ++ F +NM L G+ P++M L I+ ++ HRREV+ R Sbjct: 307 VKRDAVG-EVVLNNLYSQTQLQVSFGINMVALHHGQ-PKIMNLKDIIAAFVRHRREVVTR 364 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----------- 420 R+ F ++ R IL+ L +A NID II +IR+ P K +V+ Sbjct: 365 RTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAML 424 Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457 + LTE Q AIL+LRL+ L LE ++ E LL + Sbjct: 425 ERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQ 484 Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517 ++ +L S + I E+ V+E F G +R T + AD + +I + Sbjct: 485 IAELLRILGSADRLMEVIREELELVREQF------GDKRRTEITANSADINL--EDLITQ 536 Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569 E + V +S++G+++ + + SA K+ D + L A+T D IL S+ Sbjct: 537 EDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKDEDFIDRLLVANTHDHILCFSSR 596 Query: 570 GKAYTLPAGNLLSG-RG-HGEAIQLLIDLNHNQDIVTAFV----YDSTCKLLVVSSKGN 622 G+ Y++ L RG G I L+ L ++ I TA + ++ K+ + ++ G Sbjct: 597 GRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERI-TAILPVTEFEEGVKVFMATANGT 654 >gi|319954436|ref|YP_004165703.1| DNA gyrase subunit a [Cellulophaga algicola DSM 14237] gi|319423096|gb|ADV50205.1| DNA gyrase subunit A [Cellulophaga algicola DSM 14237] Length = 844 Score = 415 bits (1067), Expect = e-113, Method: Compositional matrix adjust. Identities = 236/598 (39%), Positives = 362/598 (60%), Gaps = 31/598 (5%) Query: 26 LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85 ++ Y+ Y++S I RA+PD+RDG KPVHRR++ M E+G+ +A KKSARIVGEV+GK Sbjct: 16 MKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLFGMYELGVRSTSAHKKSARIVGEVLGK 75 Query: 86 LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145 HPHGD SVYDS+VR+AQ + RY L+ GQGNFG+IDGDS AA RYTEARM ++A+ +L Sbjct: 76 YHPHGDTSVYDSMVRMAQEWSLRYMLVDGQGNFGSIDGDSPAAMRYTEARMRKIADDMLA 135 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 +D+D VD + +++ EP V P++ PNLL NG SGIAVGMAT++P HN+ E+ + +A Sbjct: 136 DIDKDTVDHQLNFDDTLKEPKVLPTRIPNLLVNGASGIAVGMATNMPPHNLSEVVDGTIA 195 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265 I+N +I I++L+ +I PDFPTGGII + + E++ GRG +RA+ EEV +G Sbjct: 196 YIENNDIEIDELITHIKAPDFPTGGIIY-GYDGVKEAFHTGRGRVVMRAKASFEEV-QGR 253 Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325 CI+VTEIPYQV K+ +I+K A+L+ K+I + IRDES + +++ R P+++ Sbjct: 254 ECIIVTEIPYQVNKADMIKKTADLVNDKKIEGISTIRDESDRNGMRIVYIIKRDAIPNIV 313 Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385 + +++ + +++ F +N L GR PQ++ + ++ ++ HR EV+ RR+ F ++ + Sbjct: 314 LNTLYKYTALQSSFSVNNIALVNGR-PQMLNVKEMIHYFVEHRHEVVVRRTEFELKKAED 372 Query: 386 RVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKL 442 R IL+GL+IA NIDE+IAIIR N D+ + ++ RF L+E Q AI+ +RLR L L Sbjct: 373 RAHILEGLIIASDNIDEVIAIIRASSNADEARTNLMERFKLSEIQAKAIVEMRLRQLTGL 432 Query: 443 EEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEV 502 E+ ++++E D +LA + +L +++ I E+ EVK + RR+ E+ Sbjct: 433 EQDKLRTEYDEILAFIIDLKDILARKERRMEIIKEELAEVKAKYGDE-----RRS---EI 484 Query: 503 SRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIA 554 + A + MI E + + IS+ G+I ++ V A + D L+ Sbjct: 485 NFAGGDLSMEDMIPDEQVVITISHAGYIKRTALSEYKTQNRGGVGQKASSTRNEDFLEHL 544 Query: 555 LHAHTTDRILLLSTDGKA-----YTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV 607 +L + GK Y +P G S G AIQ LI + + D V AF+ Sbjct: 545 FVGTNHQYMLFFTQKGKCFWMRVYEIPEG---SKSSKGRAIQNLISI-ESDDKVKAFI 598 >gi|225011966|ref|ZP_03702404.1| DNA gyrase, A subunit [Flavobacteria bacterium MS024-2A] gi|225004469|gb|EEG42441.1| DNA gyrase, A subunit [Flavobacteria bacterium MS024-2A] Length = 831 Score = 415 bits (1067), Expect = e-113, Method: Compositional matrix adjust. Identities = 255/764 (33%), Positives = 421/764 (55%), Gaps = 49/764 (6%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 +++ ++ Y+ Y++S I RA+PD+RDG KPVHRR++ M E+G+ A KKSARIV Sbjct: 10 INIEDEMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLFGMHELGIRANTAHKKSARIV 69 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 GEV+GK HPHGD SVYD++VR+AQ + RY L+ GQGNFG++DGDS AA RYTEARM ++ Sbjct: 70 GEVLGKYHPHGDSSVYDTMVRMAQEWSLRYLLVDGQGNFGSVDGDSPAAMRYTEARMQKI 129 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 +E +L +D++ VD + +++ EP V P++ PNLL NG SGIAVGMAT++P HN+ E+ Sbjct: 130 SEDLLADIDKETVDLQLNFDDTLKEPTVLPTRVPNLLINGASGIAVGMATNMPPHNLTEV 189 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 + + I+N +I+IE+L++ I PDFPTGG I + + E++ GRG +RA+ +E Sbjct: 190 VDGTIQYIENNDITIEELIKTIKAPDFPTGGTIY-GYDGVREAFLTGRGRIVIRAKANIE 248 Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319 EV G CI+VTEIPYQV K+ +I K AE++ K++ + IRDES + +++ R Sbjct: 249 EVN-GRECIIVTEIPYQVNKAEMIRKTAEMVNDKKVEGISSIRDESDRNGMRIVYILKRD 307 Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379 P++++ ++ + +++ F +N L GR PQ++ L ++ ++ HR +V+ RR+ F Sbjct: 308 AVPNIVLNKLYKYTALQSSFSVNNIALVKGR-PQMLNLKEMIHHFVEHRHDVVVRRTQFE 366 Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAILNLRL 436 ++ + R IL+GL+IA NIDE+I IIR + D + ++ +F L+E Q AI+ +RL Sbjct: 367 LRKAEDRAHILEGLIIASDNIDEVIKIIRASQSADAARENLIKQFKLSEIQAKAIVEMRL 426 Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496 R L LE+ ++++E ++LL + +L+ +++ I E+ E+K+ + G R Sbjct: 427 RQLTGLEQDKLRTEYNDLLVTIADLKDILDKKERRMEIIKLELVEIKDKY------GDER 480 Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEG 548 + E + D + + MI E + + IS+ G+I ++ V A ++ Sbjct: 481 RSNIEYAGGDFS--MEDMIPDEQVVITISHAGYIKRTPLIEYKTQNRGGVGQKASTTRDE 538 Query: 549 DSLKIALHAHTTDRILLLSTDGKA-----YTLPAGNLLSGRGHGEAIQLLIDLNHNQDIV 603 D L+ +L + GK Y +P G S G AIQ LI++ + D V Sbjct: 539 DFLQDLFVGTNHQYMLFFTQKGKCFWMRVYEIPEG---SKTAKGRAIQNLINIEQD-DKV 594 Query: 604 TAFV---------YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654 AF+ Y + +++ + KG + G + V ++++ L Sbjct: 595 QAFICTQDLKDEEYINNHYVIMATKKGQVKKTSLEQYSRPRANGINAINVREDDEL-LEA 653 Query: 655 KVT--GDHVAVVGENRKLLIFSIDQIPEMSRG----KGVRLQSYKDGGISDVICFKICEG 708 K+T HV + ++ K + F + M RG +G+ L KD + V + Sbjct: 654 KLTNGNSHVMLAVKSGKAIRFEESKTRPMGRGASGVRGITLADSKDEVVGMVAVNDMDAN 713 Query: 709 LTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752 + + G S +D + RGG G ++GK ++ Sbjct: 714 ILVVSENGYGKRSSLDDY--RITNRGGKGVKTISITDKTGKLVT 755 >gi|118498055|ref|YP_899105.1| DNA gyrase, subunit A [Francisella tularensis subsp. novicida U112] gi|194323280|ref|ZP_03057064.1| DNA gyrase, A subunit [Francisella tularensis subsp. novicida FTE] gi|208779535|ref|ZP_03246880.1| DNA gyrase, A subunit [Francisella novicida FTG] gi|254374873|ref|ZP_04990354.1| DNA gyrase [Francisella novicida GA99-3548] gi|118423961|gb|ABK90351.1| DNA gyrase, subunit A [Francisella novicida U112] gi|151572592|gb|EDN38246.1| DNA gyrase [Francisella novicida GA99-3548] gi|194322644|gb|EDX20124.1| DNA gyrase, A subunit [Francisella tularensis subsp. novicida FTE] gi|208744496|gb|EDZ90795.1| DNA gyrase, A subunit [Francisella novicida FTG] Length = 868 Score = 415 bits (1067), Expect = e-113, Method: Compositional matrix adjust. Identities = 257/736 (34%), Positives = 417/736 (56%), Gaps = 87/736 (11%) Query: 11 TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70 +++ + ++++ L++ YL YA+S I RA+PD+RDG KPVHRR++ AM+E+ + Sbjct: 2 SIITKESSSINIEKELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELSNYYNR 61 Query: 71 AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130 +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG++DGDS AA R Sbjct: 62 PYKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYTLVDGQGNFGSVDGDSPAAMR 121 Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190 YTE RM ++ +L +D++ VDF Y+ + P V P++ PNLL NG+SGIAVGMAT+ Sbjct: 122 YTEIRMEKLTHELLIDIDKETVDFSPNYDNTELVPDVLPTRVPNLLVNGSSGIAVGMATN 181 Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250 IP HN+ E+ +ALIDNP ++IE+L+EYI PDFPTG I + I+E+Y+ GRG Sbjct: 182 IPPHNMTEVINGTIALIDNPNLTIEELIEYIPAPDFPTGSYI-NGTDGILEAYKTGRGRV 240 Query: 251 RVRARWCV-EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED- 308 +RA+ + E+ G I+VTEIPYQV K++L+EKIAEL+ K++ + ++RDES +D Sbjct: 241 IMRAKADIHEDEASGKAQIIVTEIPYQVNKAKLVEKIAELVKDKKVAGISELRDESDKDG 300 Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368 +R+V+ K R P++++ +++ + ++ F +NM LS R P+++ L IL++++ HR Sbjct: 301 IRVVIDLK-RDESPEVVLNTLYAQTQLQCSFGINMVALSDNR-PKLLNLKEILEQFIKHR 358 Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----- 420 +EV+ RR+ F ++ R IL+GLL++ NIDE+I +I+ P K M++R Sbjct: 359 KEVVTRRTIFELRKSKERAHILEGLLLSLANIDEMIELIKASPSPADAKESMLARSWNGS 418 Query: 421 ------------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSE 450 ++LTE Q DAIL LRL L LE+ +I +E Sbjct: 419 MVKSMLEGVDVKMYRKETLASHYGIQVDSSYNLTEEQADAILALRLHRLTGLEQDKIVNE 478 Query: 451 LDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATL 510 L+ + + S+L+ + + E+ E+++ + G +R + SR D Sbjct: 479 FKELIDRIKYLISILSDINELIRVVKDELVEIRDNY------GDQRKSEIIESRLD--LT 530 Query: 511 QQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDR 562 ++ +I +E + V +S G++++ K V SA KE DS+ + A T D Sbjct: 531 REDLIAEEDMVVTLSMDGYVKTQPLSMYNAQKRGGVGKSATKTKEEDSIFKLMLASTHDT 590 Query: 563 ILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV----YDSTCK 613 +L S+ G K Y P + +S G I ++ L ++ I TA + ++ Sbjct: 591 MLCFSSLGRVYWSKVYDFPVASRIS---KGRPINNILPLEKDERI-TAMMPISQFNEGWY 646 Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIF 673 + + + G V+ SE GK + ++ +++ +VA+ N+++++F Sbjct: 647 VFMATKLGRVKKVDLSEFARPRSTGKIAIGLNDGDELS--------YVALTDGNKQIMMF 698 Query: 674 SIDQIPEMSRGKGVRL 689 S GK +R Sbjct: 699 S-------DAGKAIRF 707 >gi|265984159|ref|ZP_06096894.1| hypothetical protein BAKG_00488 [Brucella sp. 83/13] gi|264662751|gb|EEZ33012.1| hypothetical protein BAKG_00488 [Brucella sp. 83/13] Length = 922 Score = 415 bits (1067), Expect = e-113, Method: Compositional matrix adjust. Identities = 254/679 (37%), Positives = 379/679 (55%), Gaps = 61/679 (8%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 ++ +S+ ++ YL YA+S I RA+PD+RDG KPVHRRI+HAM+EM L + ++KSA Sbjct: 12 IEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAMNEMNLAYNRPYRKSA 71 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 +VGEV+GK HPHGD S+YD+LVR+AQ F R PLI GQGNFG+IDGD AA RYTE R+ Sbjct: 72 GVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLIDGQGNFGSIDGDPPAAMRYTECRL 131 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 +V E +L +D+D V+F+D Y+ + EPVV P++FPNLL NG+ GIAVGMAT+IP HN+ Sbjct: 132 EKVTESLLSDIDKDTVNFQDNYDGREQEPVVLPARFPNLLVNGSGGIAVGMATNIPPHNL 191 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ + +ALIDNP I + +L+E I GPDFPTGGII+ R I +Y GRG +R R Sbjct: 192 GEVIDGCVALIDNPAIELSELMELIPGPDFPTGGIIL-GRNGINSAYTTGRGSVIMRGRA 250 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316 +E + I++TEIPYQV K+ +IEK+AEL+ KRI + D+RDES + V+ Sbjct: 251 TIEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKRIDGISDLRDESDREGYRVVVEL 310 Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376 R D+++ ++ + ++T F NM L+ G+ Q+ LD +L+ ++A R EV+ RR+ Sbjct: 311 KRDAVADVVLNQLYRYTPLQTSFGCNMVALNGGKPEQLTLLD-MLRAFVAFREEVVTRRT 369 Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP----KPVMVSR------------ 420 F + R +L GL IA NIDE+IA+IR P + +M R Sbjct: 370 KFLLNKARDRAHVLVGLAIAVANIDEVIALIRRAPDPATAREQLMERRWPAVDVAPLIRL 429 Query: 421 -------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467 ++L+E Q AIL+LRL+ L L ++ EL+ + E +L S Sbjct: 430 IDDPRHTLNEDNTYNLSEEQARAILDLRLQRLTALGRDEVADELNKIGEEIRDYLDILGS 489 Query: 468 GKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNR 527 + N + E+ V++ F+ RRT E+ + +I +E + V +S+ Sbjct: 490 RLRVMNIVKEEMIAVRDEFATP-----RRT---EIGFGGAEMDDEDLIAREDMVVTVSHA 541 Query: 528 GWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYT 574 G+I R+ + S + KE D + A++ +L S+ G K + Sbjct: 542 GYIKRVPLTTYRAQRRGGKGRSGMTTKEEDFVTRLFVANSHTPVLFFSSRGIVYKEKVWR 601 Query: 575 LPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY----DSTCKLLVV--SSKGNAFIVEE 628 LP G S G+A+ ++ L + I T DS L V+ +++G + Sbjct: 602 LPVGTPQS---RGKALINMLPLQQGERITTIMPLPEDEDSWANLDVMFSTTRGTVRRNKL 658 Query: 629 SEIIANTRKGKTFLKVSSE 647 S+ + R GK +K+ E Sbjct: 659 SDFVQVNRNGKIAMKLEDE 677 >gi|15893305|ref|NP_346654.1| DNA gyrase subunit A [Clostridium acetobutylicum ATCC 824] gi|18273029|sp|P94605|GYRA_CLOAB RecName: Full=DNA gyrase subunit A gi|15022824|gb|AAK77994.1|AE007513_7 DNA gyrase (topoisomerase II) A subunit [Clostridium acetobutylicum ATCC 824] gi|325507414|gb|ADZ19050.1| DNA gyrase subunit A [Clostridium acetobutylicum EA 2018] Length = 830 Score = 415 bits (1067), Expect = e-113, Method: Compositional matrix adjust. Identities = 253/682 (37%), Positives = 408/682 (59%), Gaps = 36/682 (5%) Query: 12 LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71 L E V V + +++ Y+ YA+S I RA+PD+RDG KPVHRRI+++M E+GL Sbjct: 2 LNEGKVLPVDISSEMKKCYIDYAMSVIVSRALPDVRDGLKPVHRRILYSMHELGLTPEKG 61 Query: 72 FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131 ++K ARIVG+V+GK HPHGD SVY +LVRLAQ F RY ++ G GNFG++DGDSAAA RY Sbjct: 62 YRKCARIVGDVLGKYHPHGDSSVYGALVRLAQDFNLRYTVVDGHGNFGSVDGDSAAAMRY 121 Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191 TEA+M ++A +++ + ++ VDF ++ E+ EPVV PS+FPNLL NG++GIAVGMAT+I Sbjct: 122 TEAKMNKIALEMVRDIGKNTVDFIPNFDGEEKEPVVLPSRFPNLLVNGSAGIAVGMATNI 181 Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251 P HN+ E+ + LIDNPE +I +L+ I GPDFPT GII+ + I +Y GRG Sbjct: 182 PPHNLGEVIDGITMLIDNPEATILELMAQIKGPDFPTAGIIM-GKSGIRAAYETGRGKIT 240 Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VR 310 VRA+ +E G I++TEIPYQV K+RL+E IA+L+ KRI + D+RDES D +R Sbjct: 241 VRAKSEIEVEDNGKQKIIITEIPYQVNKARLVESIADLVKDKRIVGISDLRDESDRDGMR 300 Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370 IV+ K + + ++++ ++ + ++ F +NM L R P+V+ L IL+ ++ + + Sbjct: 301 IVIEIK-KDANSNIILNQLYKHTRLQDTFGINMLALVDNR-PEVLNLKQILQHYIKFQEQ 358 Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQ 427 V+ RR+ F ++ R IL+GL IA +IDE+I++IR + K ++ +F L+E Q Sbjct: 359 VIRRRTEFDLEKASARAHILEGLKIALDHIDEVISLIRGSKTAQEAKLGLMDKFGLSEKQ 418 Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR-EVKEIF 486 AIL+L+L+ L LE +I+ E + L+ ++ S+L N+I IR E+ EI Sbjct: 419 AQAILDLKLQRLTGLEREKIEDEYNELMKTIAELKSIL----ADENKILAIIRDELNEIK 474 Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD------- 539 +K D R+T + RA+ + +I++E + + +++ G+I+ + + + Sbjct: 475 AKYGD--ERKTA---IERAENDIDIEDLIQEENVVITLTHAGYIKRINADTYTSQKRGGR 529 Query: 540 -LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL-LSGR-GHGEAIQLLIDL 596 + A+ KE D ++ T + IL + G+ Y L A + +GR G + L+ L Sbjct: 530 GIQAMTTKEDDFVENIFITSTHNNILFFTNKGRMYKLKAYQIPEAGRAAKGTNVVNLLQL 589 Query: 597 NHN---QDIVTAFVYDSTCKLLVVSSKGNAFIVEESEI--IANTRK-GKTFLKVSSEEKM 650 + N Q +++ +D L++ + KG I++++ + N RK G + ++ ++++ Sbjct: 590 DPNEKIQAVISIKEFDEESFLVMCTKKG---IIKKTVVGMYKNIRKSGLIAINLNDDDEL 646 Query: 651 KLVVKVTGDHVAVVGENRKLLI 672 V GD ++ N+ L I Sbjct: 647 VSVRITKGDDDIIIVTNKGLAI 668 >gi|256369524|ref|YP_003107034.1| DNA gyrase subunit A [Brucella microti CCM 4915] gi|255999686|gb|ACU48085.1| DNA gyrase subunit A [Brucella microti CCM 4915] Length = 922 Score = 415 bits (1067), Expect = e-113, Method: Compositional matrix adjust. Identities = 254/679 (37%), Positives = 379/679 (55%), Gaps = 61/679 (8%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 ++ +S+ ++ YL YA+S I RA+PD+RDG KPVHRRI+HAM+EM L + ++KSA Sbjct: 12 IEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAMNEMNLAYNRPYRKSA 71 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 +VGEV+GK HPHGD S+YD+LVR+AQ F R PLI GQGNFG+IDGD AA RYTE R+ Sbjct: 72 GVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLIDGQGNFGSIDGDPPAAMRYTECRL 131 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 +V + +L +D+D V+F+D Y+ + EPVV P++FPNLL NG+ GIAVGMAT+IP HN+ Sbjct: 132 EKVTKSLLSDIDKDTVNFQDNYDGREQEPVVLPARFPNLLVNGSGGIAVGMATNIPPHNL 191 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ + +ALIDNP I + +L+E I GPDFPTGGII+ R I +Y GRG +R R Sbjct: 192 GEVIDGCVALIDNPAIELSELMELIPGPDFPTGGIIL-GRNGINSAYTTGRGSVIMRGRA 250 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316 +E + I++TEIPYQV K+ +IEK+AEL+ KRI + D+RDES + V+ Sbjct: 251 TIEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKRIDGISDLRDESDREGYRVVVEL 310 Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376 R D+++ ++ + ++T F NM L+ G+ Q+ LD +L+ ++A R EV+ RR+ Sbjct: 311 KRDAVADVVLNQLYRYTPLQTSFGCNMVALNGGKPEQLTLLD-MLRAFVAFREEVVTRRT 369 Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP----KPVMVSR------------ 420 F + R +L GL IA NIDE+IA+IR P + +M R Sbjct: 370 KFLLNKARDRAHVLVGLAIAVANIDEVIALIRRAPDPATAREQLMERRWPAVDVAPLIRL 429 Query: 421 -------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467 ++L+E Q AIL+LRL+ L L ++ EL+ + E +L S Sbjct: 430 IDDPRHTLNEDNTYNLSEEQARAILDLRLQRLTALGRDEVADELNKIGEEIRDYLDILGS 489 Query: 468 GKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNR 527 + N + E+ V++ F+ RRT E+ + +I +E + V +S+ Sbjct: 490 RLRVMNIVKEEMIAVRDEFATP-----RRT---EIGFGGAEMDDEDLIAREDMVVTVSHA 541 Query: 528 GWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYT 574 G+I R+ + S + KE D + A+T +L S+ G K + Sbjct: 542 GYIKRVPLTTYRAQRRGGKGRSGMATKEEDFVTRLFVANTHTPVLFFSSRGIVYKEKVWR 601 Query: 575 LPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY----DSTCKLLVV--SSKGNAFIVEE 628 LP G S G+A+ ++ L + I T DS L V+ +++G + Sbjct: 602 LPVGTPQS---RGKALINMLPLQQGERITTIMPLPEDEDSWANLDVMFSTTRGTVRRNKL 658 Query: 629 SEIIANTRKGKTFLKVSSE 647 S+ + R GK +K+ E Sbjct: 659 SDFVQVNRNGKIAMKLEDE 677 >gi|154248237|ref|YP_001419195.1| DNA gyrase, A subunit [Xanthobacter autotrophicus Py2] gi|154162322|gb|ABS69538.1| DNA gyrase, A subunit [Xanthobacter autotrophicus Py2] Length = 914 Score = 415 bits (1067), Expect = e-113, Method: Compositional matrix adjust. Identities = 248/689 (35%), Positives = 382/689 (55%), Gaps = 55/689 (7%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 +++ VS+ L YL YA+S I RA+PD+RDG KPVHRRI+ +M E G ++ +++KS Sbjct: 16 DIRPVSITEELSRSYLDYAMSVIVARALPDVRDGLKPVHRRILFSMHENGYEWNKSYRKS 75 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 AR+VG+VIGK HPHGDQSVYD+LVR+AQ F R PL+ GQGNFG++DGD+ AA RYTE R Sbjct: 76 ARVVGDVIGKYHPHGDQSVYDALVRMAQTFAMRLPLVDGQGNFGSVDGDAPAAMRYTEVR 135 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 + +V +L +D+D VDF+D Y+ + EP V P+KFPNLL NG GIAVGMAT+IP HN Sbjct: 136 LEKVTNALLDDLDKDTVDFQDNYDNSEHEPTVLPAKFPNLLVNGAGGIAVGMATNIPPHN 195 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 + EI + +AL+D+P + E LL+ + GPDFPTG +I+ R I ++Y GRG +RA+ Sbjct: 196 LGEIVDTTVALLDDPTLEPEALLDLLPGPDFPTGALIL-GRTGIRQAYLTGRGSILMRAK 254 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315 +E + + ++VTEIPYQV K+ +IEK+AEL+ KRI + +IRDES D V+ Sbjct: 255 VAIENIRKEREALIVTEIPYQVNKATMIEKMAELVRDKRIEGIAEIRDESDRDGMRVVIE 314 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 R D+++ +++ L+ ++T F +NM LS G+ P V+ L +L ++A R EV+ RR Sbjct: 315 IKRDAQADVVLNNLYRLTLLQTSFGVNMVALSGGK-PGVLTLHDVLTAFIAFREEVISRR 373 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR------------ 420 + F ++ R +L GL IA NIDE+I +IR P + +++R Sbjct: 374 TKFLLRKARDRAHVLVGLAIAVANIDEVIRLIRTAPDPASAREALMARDWPAKDMAPLIA 433 Query: 421 --------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466 + L+ Q AIL+LRL+ L L +I ELD L E +L Sbjct: 434 LIADPRHKLGPDDTYRLSFEQARAILDLRLQRLTALGRDEIAEELDKLAVEIADYLDILA 493 Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526 S + + E+ +KE F RRT E+ + +I++E + V +S+ Sbjct: 494 SRPRMRAIVRAELIAIKEEFGTP-----RRT---EIVEGFGDLEDEDLIQREEMVVTVSH 545 Query: 527 RGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAG 578 G+I R+ + SA+ ++ D + A T +L S+ G+ Y L Sbjct: 546 AGYIKRVPLSTYRAQRRGGKGRSAMQTRDEDFVTRLFVASTHAPVLFFSSKGQVYKLKVW 605 Query: 579 N--LLSGRGHGEAIQLLIDLNHNQDIVTAFVY------DSTCKLLVVSSKGNAFIVEESE 630 L + + G+A+ ++ L ++ I + + + +++ ++ G ++ Sbjct: 606 RLPLAAPQARGKALINILPLEQDERITSVVLLPEDSDENERLQIMFATTGGTVRRNALTD 665 Query: 631 IIANTRKGKTFLKVSSEEKMKLVVKVTGD 659 R GK +K++ E + V T D Sbjct: 666 FQQVNRNGKIAMKLNEGEAIADVGLCTED 694 >gi|332558057|ref|ZP_08412379.1| DNA gyrase subunit A [Rhodobacter sphaeroides WS8N] gi|332275769|gb|EGJ21084.1| DNA gyrase subunit A [Rhodobacter sphaeroides WS8N] Length = 920 Score = 415 bits (1067), Expect = e-113, Method: Compositional matrix adjust. Identities = 253/671 (37%), Positives = 384/671 (57%), Gaps = 57/671 (8%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 VS+ ++ YL YA+S I RAIPDLRDG KPVHRRI++AM E G ++KSAR V Sbjct: 24 VSIAEEMKTAYLDYAMSVIVSRAIPDLRDGLKPVHRRILYAMHETGNTSDKPYRKSARPV 83 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+ +GK HPHGD ++Y +LVR+AQPF L+ GQGNFG++DGD+AAA RYTE RM + Sbjct: 84 GDTMGKYHPHGDGAIYYALVRMAQPFSMGLKLLDGQGNFGSMDGDNAAAMRYTEVRMDKP 143 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A +L +D+D VDF+D Y+ +D EP V P++FPN+L NG GIAVGMAT+IP HN+ E+ Sbjct: 144 AAFLLADIDKDTVDFQDNYDGKDREPTVLPARFPNMLVNGAGGIAVGMATNIPPHNLGEV 203 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 +A LA+I+NP+IS E+L+E I GPDFPTGG+I+ R ++Y GRG +RA+ VE Sbjct: 204 VDATLAMIENPDISTERLMEIIPGPDFPTGGVIL-GRSGARKAYLEGRGSVIMRAKARVE 262 Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE-DVRIVLFPKNR 318 E+ + + IV+ EIPYQV K+ +IEKIA+++ K+I + ++DES VR+V+ K R Sbjct: 263 EIRKDRYAIVLDEIPYQVNKATMIEKIADMVREKKIEGIAHVQDESDRVGVRVVIELK-R 321 Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378 P++++ ++ + M+T F NM L+ GR P+ + L L +L R +V+ RR+++ Sbjct: 322 DATPEVVLNQLWRFTPMQTTFGCNMLALNGGR-PEQLTLRDFLSHFLTFREDVVARRTAY 380 Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP----KPVMVSR-------------- 420 ++ R IL GL +A N+DE++A IR+ P + +M R Sbjct: 381 ELRKARERSHILCGLAVAVSNVDEVVATIRSSADPAEARERLMTRRWPAADIADYIRLID 440 Query: 421 -----------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGK 469 ++L+E Q AIL+LRL+ L + ++ EL L A+ +L S + Sbjct: 441 DPSHTINEDGTYNLSEIQARAILDLRLQRLTAMGVKEVTDELAELAAKIRDYLDILGSRE 500 Query: 470 QQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW 529 + I+ E+REVK++F+ RRT E+S + +IE+E + V I++ G+ Sbjct: 501 RIMAIISDELREVKDLFAVP-----RRT---EISEWAGDLEDEDLIEREDMVVTITSGGY 552 Query: 530 I--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL- 580 I RS + L+++ KE D + A+T ++L +TDG Y L L Sbjct: 553 IKRTPLAEFRSQRRGGKGLASMATKEDDVVTTLFVANTHTQLLFFTTDGMVYDLKCWRLP 612 Query: 581 LSGR-GHGEAIQLLIDLNHNQDIVTAFVYDST------CKLLVVSSKGNAFIVEESEIIA 633 L GR G+AI ++ + I D +++ +S+G+ S+ Sbjct: 613 LGGRTAKGKAIVNILPIATGISIAALMKIDEPEEEWDRLQVVFATSEGDVRRNRLSDFTN 672 Query: 634 NTRKGKTFLKV 644 R GK +K+ Sbjct: 673 VKRNGKIAMKL 683 >gi|54309620|ref|YP_130640.1| putative DNA topoisomerase (ATP-hydrolyzing) [Photobacterium profundum SS9] gi|46914058|emb|CAG20838.1| putative DNA topoisomerase (ATP-hydrolyzing) [Photobacterium profundum SS9] Length = 894 Score = 415 bits (1067), Expect = e-113, Method: Compositional matrix adjust. Identities = 241/605 (39%), Positives = 362/605 (59%), Gaps = 57/605 (9%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + V++ L+ YL YA+S I RA+PD+RDG KPVHRR++ AM+ +G D+ A+KKSA Sbjct: 8 ITPVNIEDELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKKSA 67 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG++DGDSAAA RYTE RM Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRM 127 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 +++A +L +D++ VD+ Y+ + PVV P++ PNLL NG+SGIAVGMAT+IP HN+ Sbjct: 128 SKIAHELLADLDKETVDYVPNYDGTEFIPVVMPTRVPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ LA IDN +I++E+L++YI GPDFPT +I R+ I+++Y GRG +RA+ Sbjct: 188 GEVINGCLAFIDNEDITVEQLMDYIPGPDFPTAALI-NGRKGIIDAYHTGRGKVYMRAKA 246 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFP 315 +E G I+VTEIPYQV K+RLIEKIAEL+ K++ + +RDES +D +RIV+ Sbjct: 247 NIEVEKNGRETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVVEC 306 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 K ++ ++++ +++ + ++T F +NM L G+ P++ L +LK ++ HRREV+ RR Sbjct: 307 KRDAVG-EVILNNLYSQTQLQTTFGINMVALDHGQ-PKLFGLKEMLKCFVNHRREVVTRR 364 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK----------------PVMVS 419 + F ++ R +L+GL IA +NID II +I++ P+ M+ Sbjct: 365 TIFELRKARERAHLLEGLAIALVNIDAIIELIKSAPTPQVAREGLLASPWQLGDVAAMLE 424 Query: 420 R---------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458 R + LTE Q AIL LRL L LE +I E LL Sbjct: 425 RGGVDAARPEWLEPQYGIHGGQYFLTEPQAQAILELRLHRLTGLEHEKILEEYKGLLDVI 484 Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518 E++ +L S ++ I E+ VKE F+ RRT E++ A + +I +E Sbjct: 485 EELLLILGSPERLMEVIRDELHAVKEQFNDE-----RRT---EITAASHDIDLEDLITQE 536 Query: 519 PITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570 + V +S+ G+++ + + A K+ D ++ L A+T D IL S+ G Sbjct: 537 DVVVTLSHEGYVKYQILSDYEAQRRGGKGKIATRMKDEDFIERLLVANTHDTILCFSSRG 596 Query: 571 KAYTL 575 + Y L Sbjct: 597 RMYWL 601 >gi|73916160|gb|AAZ92948.1| DNA gyrase subunit A [Streptococcus pneumoniae] Length = 822 Score = 415 bits (1066), Expect = e-113, Method: Compositional matrix adjust. Identities = 257/706 (36%), Positives = 413/706 (58%), Gaps = 38/706 (5%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 ++N+ V+L ++ ++ YA+S I RA+PD+RDG KPVHRRI++ M+E+G+ K Sbjct: 3 DKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHK 62 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSARI G+V+GK HPHGD S+Y+++VR+AQ + RY L+ G GNFG++DGDSAAA RYTE Sbjct: 63 KSARITGDVMGKYHPHGDFSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYTE 122 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 ARM+++A +L+ ++++ VDF D Y+ + EP+V P++FPNLL NG +GIAVGMAT+IP Sbjct: 123 ARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIPP 182 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E +A ++DNPE++ + L+E + GPDFPTG +++ + I ++Y G+G +R Sbjct: 183 HNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVM-GKSGIHKAYETGKGSIVLR 241 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312 +R +E G IVVTE PY V K+++ E I L+ KRI + +RDES E VR V Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 + K R ++++ ++F ++ M+T F NM + G +P+++ L IL ++ H++EV+ Sbjct: 302 IEVK-RDASANVILNNLFKMTQMQTNFGFNMLAIQNG-IPKILSLRQILDAYIEHQKEVV 359 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVD 429 RR+ F + + R IL+GLLIA +IDE+I IIR + + + ++S+F L E Q Sbjct: 360 VRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSKFKLYERQSQ 419 Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489 AIL++RLR L LE +I+SE D+LLA + +L ++ I E+ EVK FS Sbjct: 420 AILDMRLRRLTGLERDKIQSEYDDLLALIADLADILAKPERVSQIIKDELDEVKRKFSD- 478 Query: 490 TDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSL--------KSHSVDL 540 +RRT E+ +L+ + +IE+ + + +SNRG+I+ L K + Sbjct: 479 ----KRRT---ELMIGQVLSLEDEDLIEESDVLITLSNRGYIKRLDQDEFTAQKRGGRGV 531 Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS-GR-GHGEAIQLLIDLNH 598 K+ D ++ + T D +L + G+ Y L + GR G + L+ L+ Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDE 591 Query: 599 NQDIVTAFVYDS----TCKLLVVSSKGNAFIVEESEI--IANTRK-GKTFLKVSSEEKMK 651 ++ I T +S L + G IV+ + + AN R+ G L + E+++ Sbjct: 592 DESIQTVINVESDRSDDAYLFFTTRHG---IVKRTSVKEFANIRQNGLKALNLKDEDELI 648 Query: 652 LVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSR-GKGVRLQSYKDG 695 V+ GD ++G + F+ + MSR GV+ + ++G Sbjct: 649 NVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMSRIATGVKGVNLREG 694 >gi|1790876|gb|AAB41131.1| DNA gyrase subunit A [Clostridium acetobutylicum ATCC 824] Length = 829 Score = 415 bits (1066), Expect = e-113, Method: Compositional matrix adjust. Identities = 253/682 (37%), Positives = 408/682 (59%), Gaps = 36/682 (5%) Query: 12 LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71 L E V V + +++ Y+ YA+S I RA+PD+RDG KPVHRRI+++M E+GL Sbjct: 2 LNEGKVLPVDISSEMKKCYIDYAMSVIVSRALPDVRDGLKPVHRRILYSMHELGLTPEKG 61 Query: 72 FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131 ++K ARIVG+V+GK HPHGD SVY +LVRLAQ F RY ++ G GNFG++DGDSAAA RY Sbjct: 62 YRKCARIVGDVLGKYHPHGDSSVYGALVRLAQDFNLRYTVVDGHGNFGSVDGDSAAAMRY 121 Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191 TEA+M ++A +++ + ++ VDF ++ E+ EPVV PS+FPNLL NG++GIAVGMAT+I Sbjct: 122 TEAKMNKIALEMVRDIGKNTVDFIPNFDGEEKEPVVLPSRFPNLLVNGSAGIAVGMATNI 181 Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251 P HN+ E+ + LIDNPE +I +L+ I GPDFPT GII+ + I +Y GRG Sbjct: 182 PPHNLGEVIDGITMLIDNPEATILELMAQIKGPDFPTAGIIM-GKSGIRAAYETGRGKIT 240 Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VR 310 VRA+ +E G I++TEIPYQV K+RL+E IA+L+ KRI + D+RDES D +R Sbjct: 241 VRAKSEIEVEDNGKQKIIITEIPYQVNKARLVESIADLVKDKRIVGISDLRDESDRDGMR 300 Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370 IV+ K + + ++++ ++ + ++ F +NM L R P+V+ L IL+ ++ + + Sbjct: 301 IVIEIK-KDANSNIILNQLYKHTRLQDTFGINMLALVDNR-PEVLNLKQILQHYIKFQEQ 358 Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQ 427 V+ RR+ F ++ R IL+GL IA +IDE+I++IR + K ++ +F L+E Q Sbjct: 359 VIRRRTEFDLEKASARAHILEGLKIALDHIDEVISLIRGSKTAQEAKLGLMDKFGLSEKQ 418 Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR-EVKEIF 486 AIL+L+L+ L LE +I+ E + L+ ++ S+L N+I IR E+ EI Sbjct: 419 AQAILDLKLQRLTGLEREKIEDEYNELMKTIAELKSIL----ADENKILAIIRDELNEIK 474 Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD------- 539 +K D R+T + RA+ + +I++E + + +++ G+I+ + + + Sbjct: 475 AKYGD--ERKTA---IERAENDIDIEDLIQEENVVITLTHAGYIKRINADTYTSQKRGGR 529 Query: 540 -LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL-LSGR-GHGEAIQLLIDL 596 + A+ KE D ++ T + IL + G+ Y L A + +GR G + L+ L Sbjct: 530 GIQAMTTKEDDFVENIFITSTHNNILFFTNKGRMYKLKAYQIPEAGRAAKGTNVVNLLQL 589 Query: 597 NHN---QDIVTAFVYDSTCKLLVVSSKGNAFIVEESEI--IANTRK-GKTFLKVSSEEKM 650 + N Q +++ +D L++ + KG I++++ + N RK G + ++ ++++ Sbjct: 590 DPNEKIQAVISIKEFDEESFLVMCTKKG---IIKKTVVGMYKNIRKSGLIAINLNDDDEL 646 Query: 651 KLVVKVTGDHVAVVGENRKLLI 672 V GD ++ N+ L I Sbjct: 647 VSVRITKGDDDIIIVTNKGLAI 668 >gi|161619050|ref|YP_001592937.1| DNA gyrase subunit A [Brucella canis ATCC 23365] gi|260566365|ref|ZP_05836835.1| conserved hypothetical protein [Brucella suis bv. 4 str. 40] gi|161335861|gb|ABX62166.1| DNA gyrase, A subunit [Brucella canis ATCC 23365] gi|260155883|gb|EEW90963.1| conserved hypothetical protein [Brucella suis bv. 4 str. 40] Length = 922 Score = 415 bits (1066), Expect = e-113, Method: Compositional matrix adjust. Identities = 251/679 (36%), Positives = 377/679 (55%), Gaps = 61/679 (8%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 ++ +S+ ++ YL YA+S I RA+PD+RDG KPVHRRI+HAM+EM L + ++KSA Sbjct: 12 IEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAMNEMNLAYNRPYRKSA 71 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 +VGEV+GK HPHGD S+YD+LVR+AQ F R PLI GQGNFG+IDGD AA RYTE R+ Sbjct: 72 GVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLIDGQGNFGSIDGDPPAAMRYTECRL 131 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 +V E +L +D+D V+F+D Y+ + EPVV P++FPNLL NG+ GIAVGMAT+IP HN+ Sbjct: 132 EKVTESLLSDIDKDTVNFQDNYDGREQEPVVLPARFPNLLVNGSGGIAVGMATNIPPHNL 191 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ + +ALIDNP I + +L+E I GPDFPTGGII+ R I +Y GRG +R R Sbjct: 192 GEVIDGCVALIDNPAIELSELMELIPGPDFPTGGIIL-GRNGINSAYTTGRGSVIMRGRA 250 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316 +E + I++TEIPYQV K+ +IEK+AEL+ KRI + D+RDES + V+ Sbjct: 251 TIEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKRIDGISDLRDESDREGYRVVVEL 310 Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376 R D+++ ++ + ++T F NM L+ G+ Q+ LD +L+ ++A R EV+ RR+ Sbjct: 311 KRDAVADVVLNQLYRYTPLQTSFGCNMVALNGGKPEQLTLLD-MLRAFVAFREEVVTRRT 369 Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP----KPVMVSR------------ 420 F + R +L GL IA NIDE+IA+IR P + +M R Sbjct: 370 KFLLNKARDRAHVLVGLAIAVANIDEVIALIRRAPDPATAREQLMERRWPAVDVAPLIRL 429 Query: 421 -------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467 ++L+E Q AIL+LRL+ L L ++ EL+ + E +L S Sbjct: 430 IDDPRHTLNEDNTYNLSEEQARAILDLRLQRLTALGRDEVADELNKIGEEIRDYLDILGS 489 Query: 468 GKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNR 527 + N + E+ V++ F+ RRT E+ + +I +E + V +S+ Sbjct: 490 RLRVMNIVKEEMIAVRDEFATP-----RRT---EIGFGGAEMDDEDLIAREDMVVTVSHA 541 Query: 528 GWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYT 574 G+I R+ + S + KE D + A T +L S+ G K + Sbjct: 542 GYIKRVPLTTYRAQRRGGKGRSGMATKEEDFVTRLFVASTHTPVLFFSSRGIVYKEKVWR 601 Query: 575 LPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV------YDSTCKLLVVSSKGNAFIVEE 628 LP G S G+A+ ++ L + I T + + ++ +++G + Sbjct: 602 LPVGTPQS---RGKALINMLPLQQGERITTIMPLPEDEDFWANLDVMFSTTRGTVRRNKL 658 Query: 629 SEIIANTRKGKTFLKVSSE 647 S+ + R GK +K+ E Sbjct: 659 SDFVQVNRNGKIAMKLEDE 677 >gi|160902696|ref|YP_001568277.1| DNA gyrase, A subunit [Petrotoga mobilis SJ95] gi|160360340|gb|ABX31954.1| DNA gyrase, A subunit [Petrotoga mobilis SJ95] Length = 813 Score = 415 bits (1066), Expect = e-113, Method: Compositional matrix adjust. Identities = 225/569 (39%), Positives = 349/569 (61%), Gaps = 29/569 (5%) Query: 26 LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85 L+ YL Y+LS I RAIPD+RDG KPV RRI+++MSE+GL ++FKK+ARIVGEV+GK Sbjct: 14 LKTSYLLYSLSVIVSRAIPDVRDGLKPVQRRILYSMSELGLKHNSSFKKNARIVGEVMGK 73 Query: 86 LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145 HPHGD ++YD+LVR+ QPF RYPL+ QGNFG+IDGD AA RYTEARM ++ E +L+ Sbjct: 74 YHPHGDAAIYDALVRMGQPFTMRYPLVEAQGNFGSIDGDPPAAMRYTEARMPELGEYMLK 133 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 ++++ VDFR+ ++ SEPVV P+ PNLL NG SGIAVGM T+IP HN+ E+ A Sbjct: 134 DIEKETVDFRENFDGSLSEPVVLPTMVPNLLMNGASGIAVGMTTNIPPHNLNELVAALKL 193 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265 LI+ PE + LL++I GPDFPTGG +V+ E + E Y GRG +R ++ +E+ G+G+ Sbjct: 194 LIEKPESEVADLLKHIKGPDFPTGGQVVDG-EGLKELYETGRGKITIRGKYRIEDEGKGT 252 Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIA----KRIPLLEDIRDES-AEDVRIVL-FPKNRS 319 IV EIPY V K+ +IE+I ++ K+ ++D+RDES E +R+V+ KN + Sbjct: 253 -SIVFDEIPYNVSKADIIEQIVRYVVKAKEQKKDVGIKDVRDESDKEGIRLVIELRKNAN 311 Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379 + L+ +F +++++ F + MNV+ + P +M L G+L+ +L HR V+ RR+ + Sbjct: 312 VKK--LINDLFKHTNLQSYFYVQMNVIDNEK-PSLMNLKGLLQSFLDHRVNVITRRTKYE 368 Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVDAILNLRL 436 ++ +R I++GL+ A ID ++ IIRN + P+ + + ++E Q AI ++RL Sbjct: 369 LEKARKRAHIVEGLIKAVQGIDTVVEIIRNSENPQEALKNLQETIGVSEEQAKAIADMRL 428 Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496 SL KLE + EL NL + E +L ++ I E+ EV F G +R Sbjct: 429 ISLSKLESTNLSEELKNLYKDIENAMDILQKKERLLGVIKEELDEVANKF------GDKR 482 Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS--------ALHFKEG 548 T ++ D A + MI+ E + +V++ G+++++ S + L + Sbjct: 483 RTEILYNKGDLAE-EVEMIQDEDVVIVLTKWGYLKAIPSSEYKVQGRGGKGVKGLKISDE 541 Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPA 577 D +K ++ + +++L S+ GKAY + A Sbjct: 542 DDVKEVIYTNKLSKLMLFSSAGKAYQINA 570 >gi|194397830|ref|YP_002037821.1| DNA gyrase subunit A [Streptococcus pneumoniae G54] gi|194357497|gb|ACF55945.1| DNA gyrase, A subunit [Streptococcus pneumoniae G54] Length = 822 Score = 415 bits (1066), Expect = e-113, Method: Compositional matrix adjust. Identities = 256/706 (36%), Positives = 412/706 (58%), Gaps = 38/706 (5%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 ++N+ V+L ++ ++ YA+S I RA+PD+RDG KPVHRRI++ M+E+G+ K Sbjct: 3 DKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHK 62 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSARI G+V+GK HPHGD S+Y+++VR+AQ + RY L+ G GNFG++DGDSAAA RYTE Sbjct: 63 KSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYTE 122 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 ARM+++A +L+ ++++ VDF D Y+ + EP+V P++FPNLL NG +GIAVGMAT+IP Sbjct: 123 ARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIPP 182 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E +A ++DNPE++ + L+E + GPDFPTG +++ + I +Y G+G +R Sbjct: 183 HNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVM-GKSGIHXAYETGKGSIVLR 241 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312 +R +E G IVVT PY V K+++ E I L+ KRI + +RDES E VR V Sbjct: 242 SRTEIETTKTGRERIVVTXFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 + K R ++++ ++F ++ M+T F NM + G +P+++ L IL ++ H++EV+ Sbjct: 302 IEVK-RDASANVILNNLFKMTQMQTNFGFNMLAIQNG-IPKILSLRQILDAYIEHQKEVV 359 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVD 429 RR+ F + + R IL+GLLIA +IDE+I IIR + + + ++S+F L+E Q Sbjct: 360 VRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSKFKLSERQSQ 419 Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489 AIL++RLR L LE +I+SE D+LLA + +L ++ I E+ EVK FS Sbjct: 420 AILDMRLRRLTGLERDKIQSEYDDLLALIADLADILAKPERVSQIIKDELDEVKRKFSD- 478 Query: 490 TDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSL--------KSHSVDL 540 +RRT E+ +L+ + +IE+ + + +SNRG+I+ L K + Sbjct: 479 ----KRRT---ELMVGQVLSLEDEDLIEESDVLITLSNRGYIKRLDQDEFTAQKRGGRGV 531 Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS-GR-GHGEAIQLLIDLNH 598 K+ D ++ + T D +L + G+ Y L + GR G + L+ L+ Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDE 591 Query: 599 NQDIVTAFVYDS----TCKLLVVSSKGNAFIVEESEI--IANTRK-GKTFLKVSSEEKMK 651 ++ I T +S L + G IV+ + + AN R+ G L + E+++ Sbjct: 592 DESIQTVINVESDRSDDAYLFFTTRHG---IVKRTSVKEFANIRQNGLKALNLKDEDELI 648 Query: 652 LVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSR-GKGVRLQSYKDG 695 V+ GD ++G + F+ + MSR GV+ + ++G Sbjct: 649 NVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMSRIATGVKGVNLREG 694 >gi|260448677|gb|ACX39099.1| DNA gyrase, A subunit [Escherichia coli DH1] gi|315136863|dbj|BAJ44022.1| DNA gyrase subunit A [Escherichia coli DH1] gi|333001821|gb|EGK21387.1| DNA gyrase, A subunit [Shigella flexneri K-218] Length = 875 Score = 415 bits (1066), Expect = e-113, Method: Compositional matrix adjust. Identities = 255/659 (38%), Positives = 381/659 (57%), Gaps = 65/659 (9%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + V++ L+ YL YA+S I RA+PD+RDG KPVHRR+++AM+ +G D+ A+KKSA Sbjct: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD +VY+++VR+AQPF RY L+ GQGNFG+IDGDSAAA RYTE R+ Sbjct: 68 RVVGDVIGKYHPHGDSAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 ++A ++ ++++ VDF D Y+ + P V P+K PNLL NG+SGIAVGMAT+IP HN+ Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ LA ID+ +ISIE L+E+I GPDFPT II R I E+YR GRG +RAR Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAII-NGRRGIEEAYRTGRGKVYIRARA 246 Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314 VE + G I+V EIPYQV K+RLIEKIAEL+ KR+ + +RDES +D +RIV+ Sbjct: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K ++ ++++ +++ + ++ F +NM L G+ P++M L I+ ++ HRREV+ R Sbjct: 307 VKRDAVG-EVVLNNLYSQTQLQVSFGINMVALHHGQ-PKIMNLKDIIAAFVRHRREVVTR 364 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----------- 420 R+ F ++ R IL+ L +A NID II +IR+ P K +V+ Sbjct: 365 RTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAML 424 Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457 + LTE Q AIL+LRL+ L LE ++ E LL + Sbjct: 425 ERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQ 484 Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517 ++ +L S + I E+ V+E F G +R T + AD + +I + Sbjct: 485 IAELLRILGSADRLMEVIREELELVREQF------GDKRRTEITANSADINL--EDLITQ 536 Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569 E + V +S++G+++ + + SA KE D + L A+T D IL S+ Sbjct: 537 EDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSR 596 Query: 570 GKAYTLPAGNLLSG-RG-HGEAIQLLIDLNHNQDIVTAFV----YDSTCKLLVVSSKGN 622 G+ Y++ L RG G I L+ L ++ I TA + ++ K+ + ++ G Sbjct: 597 GRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERI-TAILPVTEFEEGVKVFMATANGT 654 >gi|187918300|ref|YP_001883863.1| DNA gyrase subunit A [Borrelia hermsii DAH] gi|119861148|gb|AAX16943.1| DNA gyrase subunit A [Borrelia hermsii DAH] Length = 810 Score = 415 bits (1066), Expect = e-113, Method: Compositional matrix adjust. Identities = 232/606 (38%), Positives = 372/606 (61%), Gaps = 25/606 (4%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 +E + + + ++ YL YA+S I RA+PD+RDG KPVHRRI+++M EMGL AFK Sbjct: 7 KEQILNIKIEDEVKTSYLNYAMSVIVSRALPDVRDGLKPVHRRILYSMHEMGLRADKAFK 66 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 K+ RIVG+V+GK HPHGDQS+Y++LVRLAQ F RYP++ GQGNFG+IDGD AA RYTE Sbjct: 67 KAGRIVGDVLGKYHPHGDQSIYEALVRLAQDFSLRYPIVIGQGNFGSIDGDPPAAMRYTE 126 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 ARM +VAE +++ +D+ VDFR Y++ EP V P+ FP LL NG+SGIAVGMAT++ Sbjct: 127 ARMARVAEELVRDIDKQTVDFRANYDDSLLEPEVLPAAFPFLLVNGSSGIAVGMATNMAP 186 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN++EIC+A + ++D+ +S+ L+E + GPDFPT I+ + ES++++Y G+G +R Sbjct: 187 HNLKEICDAIVYMLDHDSVSVYDLIEIVKGPDFPTYAEIIYN-ESLIKAYTTGKGSVVIR 245 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIV 312 AR+ +EE I++T+IPY V KS L+ KIA LI +++ + DIRDES E +RIV Sbjct: 246 ARYHIEEKFEDHIAIIITQIPYAVNKSSLLMKIAFLIKEEKLEGVSDIRDESDREGIRIV 305 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 L K + DP ++M ++ +++ F +N N+ + +P+ + L ++ ++ HR+E++ Sbjct: 306 LEIK-KGFDPHVVMNLLYEYTELRKNFSIN-NLALVNGIPKQLNLKELISAFIEHRKEIV 363 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVD 429 RR F ++ + IL+GL IA NID +I IIR K ++ F+L+E Q + Sbjct: 364 RRRVEFDLKRAREKAHILEGLNIALRNIDRVIEIIRFARLVKDAKECIIKEFNLSEIQAN 423 Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489 +IL+++L+ L +E +++ E LLA + + +LNS ++ N +RE EI + S Sbjct: 424 SILDMKLQKLTSIETEKLEEEFKILLALIKDYEDILNSPERVVNI----VRE--EIINLS 477 Query: 490 TDLG-RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS------- 541 G RRT K ++ M ++E + V+++ +G+I+ + L Sbjct: 478 LKFGDERRTKIIYDEEVLKTSMSDLM-QRENVIVILTKQGFIKRILQDEYKLQGIGGKGL 536 Query: 542 -ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNH 598 + ++ D + I L +T D + ++S +GK Y + A + S G+ ++ LI+L Sbjct: 537 GSFDLQDRDQVNITLCVNTHDFLFMISNEGKLYVINAYGIKDTSRTSKGQNVRELINLGE 596 Query: 599 NQDIVT 604 ++I+ Sbjct: 597 TEEILA 602 >gi|73916192|gb|AAZ92964.1| DNA gyrase subunit A [Streptococcus pneumoniae] Length = 822 Score = 415 bits (1066), Expect = e-113, Method: Compositional matrix adjust. Identities = 257/706 (36%), Positives = 413/706 (58%), Gaps = 38/706 (5%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 ++N+ V+L ++ ++ YA+S I RA+PD+RDG KPVHRRI++ M+E+G+ K Sbjct: 3 DKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHK 62 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSARI G+V+GK HPHGD S+Y+++VR+AQ + RY L+ G GNFG++DGDSAAA RYTE Sbjct: 63 KSARITGDVMGKYHPHGDFSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYTE 122 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 ARM+++A +L+ ++++ VDF D Y+ + EP+V P++FPNLL NG +GIAVGMAT+IP Sbjct: 123 ARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIPP 182 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E +A ++DNPE++ + L+E + GPDFPTG +++ + I ++Y G+G +R Sbjct: 183 HNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVM-GKSGIHKAYETGKGSIVLR 241 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312 +R +E G IVVTE PY V K+++ E I L+ KRI + +RDES E VR V Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 + K R ++++ ++F ++ M+T F NM + G +P+++ L IL ++ H++EV+ Sbjct: 302 IEVK-RDASANVILNNLFKMTQMQTNFGFNMLAIQNG-IPKILSLRQILDAYIEHQKEVV 359 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVD 429 RR+ F + + R IL+GLLIA +IDE+I IIR + + + ++S+F L E Q Sbjct: 360 VRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSKFKLYERQSQ 419 Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489 AIL++RLR L LE +I+SE D+LLA + +L ++ I E+ EVK FS Sbjct: 420 AILDMRLRRLTGLERDKIQSEYDDLLALIADLADILAKPERVSQIIKDELDEVKRKFSD- 478 Query: 490 TDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSL--------KSHSVDL 540 +RRT E+ +L+ + +IE+ + + +SNRG+I+ L K + Sbjct: 479 ----KRRT---ELMIGQVLSLEDEDLIEESDVLITLSNRGYIKRLDQDEFTAQKRGGRGV 531 Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS-GR-GHGEAIQLLIDLNH 598 K+ D ++ + T D +L + G+ Y L + GR G + L+ L+ Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDE 591 Query: 599 NQDIVTAFVYDS----TCKLLVVSSKGNAFIVEESEI--IANTRK-GKTFLKVSSEEKMK 651 ++ I T +S L + G IV+ + + AN R+ G L + E+++ Sbjct: 592 DESIQTVINVESDRSDDAYLFFTTRHG---IVKRTSVKEFANIRQNGLKALNLKDEDELI 648 Query: 652 LVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSR-GKGVRLQSYKDG 695 V+ GD ++G + F+ + MSR GV+ + ++G Sbjct: 649 NVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMSRIATGVKGVNLREG 694 >gi|299769083|ref|YP_003731109.1| DNA gyrase, A subunit [Acinetobacter sp. DR1] gi|298699171|gb|ADI89736.1| DNA gyrase, A subunit [Acinetobacter sp. DR1] Length = 904 Score = 415 bits (1066), Expect = e-113, Method: Compositional matrix adjust. Identities = 264/733 (36%), Positives = 411/733 (56%), Gaps = 74/733 (10%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 ++ +++ L+ YL YA+S I RA+PD+RDG KPVHRR++ AM E+G D+ A+KKSA Sbjct: 6 IRPIAIEDELKHSYLDYAMSVIVSRALPDVRDGLKPVHRRVLFAMHELGNDYNKAYKKSA 65 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD +VY+++VR+AQ F RY L+ GQGNFG+IDGDSAAA RYTE RM Sbjct: 66 RVVGDVIGKYHPHGDSAVYETIVRMAQDFSLRYLLVDGQGNFGSIDGDSAAAMRYTEVRM 125 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 T++A +L +++D VD+ D Y+ + P V P++ PNLL NG +GIAVGMAT++ HN+ Sbjct: 126 TKLAHELLADLEKDTVDWEDNYDGSERIPQVLPTRVPNLLINGAAGIAVGMATNMAPHNM 185 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ A LA DNP IS+E L+EYI GPDFPTGGII + IV++YR G+G +R ++ Sbjct: 186 TEVVNACLAYADNPNISVEGLMEYITGPDFPTGGIIY-GKSGIVDAYRTGKGRLHIRGKY 244 Query: 257 CVEEVGR-GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315 EE + G IV TEIPYQV K+R+IE+IAEL+ K++ + ++RDES +D + Sbjct: 245 HFEEDEKTGRTTIVFTEIPYQVNKARVIERIAELVKEKKLEGISELRDESDKDGMRIAID 304 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 R + ++++ ++F+ + +E F +NM L G+ P++M L I+ ++ HR+EV+ RR Sbjct: 305 LKRGENAEVVVNNLFLNTQLENSFSINMVCLDNGQ-PKLMNLKDIIAAFIRHRQEVVTRR 363 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR--------------------------- 408 + F ++ R IL+GL +A NIDEII I+ Sbjct: 364 TMFELRKARERGHILEGLTVALANIDEIIETIKTSANPAEARERLLAGEWAGGGVISLLE 423 Query: 409 ---------------NEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453 N D+P + S + L+ QV AIL LRL L LE+ ++ +E Sbjct: 424 KAGAISVRPDEIEGENPDRPFGLTESIYRLSPTQVGAILELRLHRLTGLEQDKLHAEYTE 483 Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIR-EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ 512 +L + ++ ++LN +N + IR E+ ++ + D RRT E SR D + ++ Sbjct: 484 ILGQIAELTAILN----DFNLLMAVIREELAQVLQQYGD--GRRTEIIE-SRIDFS--RE 534 Query: 513 AMIEKEPITVVISNRGWIRS--LKSHSVDL------SALHFKEGDSLKIALHAHTTDRIL 564 +I +E + + +S G+ ++ L + SA K+ D ++ + A +L Sbjct: 535 DLIPEEQVVLTVSQTGYAKTQPLSDYQAQRRGGRGKSATSMKDDDFIQHLIVASNHATVL 594 Query: 565 LLSTDGKAYTLPAGNL-LSGRG-HGEAIQLLIDLNHNQDIVTAFV----YDSTCKLLVVS 618 + GK Y L + + RG G I L+ L+ N+ VTA + + + + + Sbjct: 595 CFTNVGKVYRLRVFEVPQASRGAKGRPIVNLLPLDANE-TVTAILPLTEFPENHYVFMAT 653 Query: 619 SKGNAFIVEESEIIANTR-KGKTFLKVSSEEKMKLVVKVTGDHVAVVGENR-KLLIFSID 676 + G V + E AN R G ++++ E+ + V G+ ++ N K + F+ Sbjct: 654 ASGTVKRV-DLEQFANIRSNGLRAIELNEEDTLIGVAITDGNQQIMLFSNEGKAIRFAET 712 Query: 677 QIPEMSR-GKGVR 688 + M R KGVR Sbjct: 713 DVRSMGRTAKGVR 725 >gi|298291664|ref|YP_003693603.1| DNA gyrase subunit alpha [Starkeya novella DSM 506] gi|296928175|gb|ADH88984.1| DNA gyrase, A subunit [Starkeya novella DSM 506] Length = 918 Score = 415 bits (1066), Expect = e-113, Method: Compositional matrix adjust. Identities = 256/694 (36%), Positives = 386/694 (55%), Gaps = 59/694 (8%) Query: 6 ISNSNTLVEEN-----VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60 +S+S+TL E+ ++ VS+ L YL YA+S I RA+PD+RDG KPVHRRI+ + Sbjct: 1 MSDSDTLKPEDGGPSDIRPVSITDELSRSYLDYAMSVIVSRALPDVRDGLKPVHRRILFS 60 Query: 61 MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120 M E + KSAR+ G+ +GK HPHG+Q++YD+LVRLAQ F R PLI GQGNFG+ Sbjct: 61 MRENNYVPERPYNKSARVTGDTMGKYHPHGNQAIYDALVRLAQDFSMRLPLIDGQGNFGS 120 Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180 IDGD AA RYTE R+ + A +L +D+D VDF+D Y+ + EP V P++FPNLL NG Sbjct: 121 IDGDPPAAERYTEVRLAKPAMNLLDDLDKDTVDFQDNYDGREQEPTVLPARFPNLLVNGA 180 Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240 GIAVGMAT+IP HN+ E+ +A +ALID P++ IEKLL+YI GPDFPTG +I+ R I Sbjct: 181 GGIAVGMATNIPPHNLGEVVDACVALIDEPDLDIEKLLDYIHGPDFPTGALIL-GRSGIR 239 Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300 ++Y GRG +R+R +EE+ + I+VTEIPYQV K+ +IE+IAEL+ KR+ + + Sbjct: 240 QAYLTGRGSIVMRSRATIEELRKDRDAIIVTEIPYQVNKATMIERIAELVRDKRLEGIAE 299 Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360 IRDES+ + V+F R D+++ +++ +S ++T F NM L+ G+ P +M L + Sbjct: 300 IRDESSREGLRVVFEIKRDAQADVVLNNLYRMSALQTSFGANMVALNGGK-PALMTLHDL 358 Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVM 417 L ++A R EV+ RR+ F ++ R +L GL IA NIDE+IA IR P + + Sbjct: 359 LTAFVAFREEVVSRRTKFLLRKARDRAHVLVGLAIAVANIDEVIATIRRSPDPATAREAL 418 Query: 418 VSR--------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451 ++R + L+ Q AIL+LRL+ L L ++ EL Sbjct: 419 MTRDWPAMDVAPLIALIDDPRHKLAEDGTYRLSAEQARAILDLRLQRLTALGRDEVADEL 478 Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511 D + E +L S ++ + E+ VK F G R T E++ A+ Sbjct: 479 DKIAVEIRDYLDILASRERIRTIVKDELLAVKAEF------GTPRKT--EITDAEGDFED 530 Query: 512 QAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRI 563 + +I +E + V +S+ G+I RS + SA+ ++ D + A T + Sbjct: 531 EDLIAREDMVVTVSHAGYIKRVPLSTYRSQRRGGKGRSAMQTRDEDFVTRIFVASTHAPV 590 Query: 564 LLLSTDGKAYTLPAGNL-LSG-RGHGEAIQLLIDLNHNQDIVTAFVYD-----STCKLLV 616 L S+ G+ Y L L LS + G+A+ ++ L + I + S +++ Sbjct: 591 LFFSSKGQVYKLKVWRLPLSAPQARGKALVNILPLTEGERITSIMALPDEETWSRLQIMF 650 Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM 650 ++ G E S+ R GK +K+ E + Sbjct: 651 STTGGTVRRNELSDFTNVNRNGKIAMKLEEGEAI 684 >gi|73670269|ref|YP_306284.1| DNA gyrase subunit A [Methanosarcina barkeri str. Fusaro] gi|72397431|gb|AAZ71704.1| DNA gyrase subunit A [Methanosarcina barkeri str. Fusaro] Length = 949 Score = 415 bits (1066), Expect = e-113, Method: Compositional matrix adjust. Identities = 260/715 (36%), Positives = 419/715 (58%), Gaps = 41/715 (5%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 V ++ + ++ Y+ YA+S I RA+PD RDGFKPVHRR++ AM E G+ +KKSA Sbjct: 73 VTSILIENEMKRSYINYAMSVIVGRALPDARDGFKPVHRRVLFAMKEAGITHDKPYKKSA 132 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+V+GK HPHGD +VYD++VR+ Q F RYPLI GQGNFG+IDGDSAAA RYTE RM Sbjct: 133 RVVGDVLGKYHPHGDTAVYDTIVRMVQDFSLRYPLIDGQGNFGSIDGDSAAAMRYTEVRM 192 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 ++AE +L +D++ V F Y+ EP V P+K PNLL NG++GIAVGMAT++ HN+ Sbjct: 193 DRIAEEMLVDIDKETVPFMPNYDGSMEEPEVLPAKLPNLLVNGSTGIAVGMATNMAPHNI 252 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ + L LI+NP+I+I +L+ I GPDFPTG I+ + I +Y GRG ++RA Sbjct: 253 GEVIDGILMLIENPDITIPELMTVIKGPDFPTGAHILGT-AGIKSAYMTGRGALKIRAVA 311 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFP 315 ++E + I+VTE+PYQV K+R+IE IA+L+ K I + D+RDES E +R+V+ Sbjct: 312 EIQEFKKDRQRIIVTELPYQVNKARMIENIAQLVREKTIMGISDLRDESDREGIRVVI-E 370 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 +R +P +++ ++ + MET F + +N+ + P+ + L +L+ +L +R E++ +R Sbjct: 371 LSRGTNPKVVLNQLYKHTQMETTFGV-INLALVDGKPKELNLKELLEIYLEYRMEIIQKR 429 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432 + + ++ + R IL GL IA NIDE++A+I+ N D+ K ++ F+L E Q AIL Sbjct: 430 TLYDLRKSEERAHILDGLKIALDNIDEVVALIKGSANADEAKKGLMENFALDEIQSKAIL 489 Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492 ++RL+ L LE ++ EL+ L+ +++ ++ S + ++ I E+ E+KE + + Sbjct: 490 DMRLQRLTGLETKKVLEELEGLVKLIGELNKIIESDELKYEIIRNELLELKEKYGDA--- 546 Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSVD------LSALH 544 RRT ++ +A ++ +I +E + V I+N G+I+ LK++++ + + Sbjct: 547 --RRT---KIMQAASEVREEDLIHEEEVVVTITNGGYIKRIPLKTYTMQHRGGRGIIGME 601 Query: 545 FKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDLNHN 599 KE D ++ + T + IL + G K Y +P G S + G+AI L++L Sbjct: 602 MKEEDFVENLFISSTHNYILFFTNLGRLYWEKVYEIPEG---SRQSRGKAIVNLLELKGG 658 Query: 600 QDI---VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV 656 + I + +D LL+ + +G SE N RK + V+ +E +LV + Sbjct: 659 ETINAMIPVKEFDKNHYLLMATREGTIKKTPLSE-FKNPRKA-GIIAVTLDEDDELVRVL 716 Query: 657 TGD---HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707 D V +V + K + FS + M R +GVR + DG +V+ I + Sbjct: 717 LTDGKKEVLIVSKKGKAIRFSEKDVRPMGRTARGVRGMAL-DGPEDEVVSLDIVD 770 >gi|17982834|gb|AAL52065.1| DNA gyrase subunit a [Brucella melitensis bv. 1 str. 16M] Length = 902 Score = 415 bits (1066), Expect = e-113, Method: Compositional matrix adjust. Identities = 254/670 (37%), Positives = 374/670 (55%), Gaps = 61/670 (9%) Query: 26 LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85 ++ YL YA+S I RA+PD+RDG KPVHRRI+HAM+EM L + ++KSA +VGEV+GK Sbjct: 1 MQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAMNEMNLAYNRPYRKSAGVVGEVMGK 60 Query: 86 LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145 HPHGD S+YD+LVR+AQ F R PLI GQGNFG+IDGD AA RYTE R+ +V E +L Sbjct: 61 YHPHGDASIYDALVRMAQDFSMRDPLIDGQGNFGSIDGDPPAAMRYTECRLEKVTESLLS 120 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 +D+D V+F+D Y+ + EPVV P++FPNLL NG+ GIAVGMAT+IP HN+ E+ + +A Sbjct: 121 DIDKDTVNFQDNYDGREQEPVVLPARFPNLLVNGSGGIAVGMATNIPPHNLGEVIDGCVA 180 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265 LIDNP I + +L+E I GPDFPTGGII+ R I +Y GRG +R R +E + Sbjct: 181 LIDNPAIELSELMELIPGPDFPTGGIIL-GRNGINSAYTTGRGSVIMRGRATIEPMRGDR 239 Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325 I++TEIPYQV K+ +IEK+AEL+ KRI + D+RDES + V+ R D++ Sbjct: 240 EAIIITEIPYQVNKASMIEKMAELVRDKRIDGISDLRDESDREGYRVVVELKRDAVADVV 299 Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385 + ++ + ++T F NM L+ G+ Q+ LD +L+ ++A R EV+ RR+ F + Sbjct: 300 LNQLYRYTPLQTSFGCNMVALNGGKPEQLTLLD-MLRAFVAFREEVVTRRTKFLLNKARD 358 Query: 386 RVEILKGLLIAYLNIDEIIAIIRNEDKP----KPVMVSR--------------------- 420 R +L GL IA NIDE+IA+IR P + +M R Sbjct: 359 RAHVLVGLAIAVANIDEVIALIRRAPDPATAREQLMERRWPAVDVAPLIRLIDDPRHTLN 418 Query: 421 ----FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476 ++L+E Q AIL+LRL+ L L ++ EL+ + E +L S + N + Sbjct: 419 EDNTYNLSEEQARAILDLRLQRLTALGRDEVADELNKIGEEIRDYLDILGSRLRVMNIVK 478 Query: 477 CEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI------ 530 E+ V++ F+ RRT E+ + +I +E + V +S+ G+I Sbjct: 479 EEMIAVRDEFATP-----RRT---EIGFGGAEMDDEDLIAREDMVVTVSHAGYIKRVPLT 530 Query: 531 --RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSG 583 R+ + S + KE D + A+T +L S+ G K + LP G S Sbjct: 531 TYRAQRRGGKGRSGMATKEEDFVTRLFVANTHTPVLFFSSRGIVYKEKLWRLPVGTPQS- 589 Query: 584 RGHGEAIQLLIDLNHNQDIVTAFVY----DSTCKLLVV--SSKGNAFIVEESEIIANTRK 637 G+A+ ++ L + I T DS L V+ +++G + S+ + R Sbjct: 590 --RGKALINMLPLQQGERITTIMPLPEDEDSWANLDVMFSTTRGTVRRNKLSDFVQVNRN 647 Query: 638 GKTFLKVSSE 647 GK +K+ E Sbjct: 648 GKIAMKLEDE 657 >gi|144899944|emb|CAM76808.1| DNA gyrase, subunit A [Magnetospirillum gryphiswaldense MSR-1] Length = 894 Score = 415 bits (1066), Expect = e-113, Method: Compositional matrix adjust. Identities = 251/680 (36%), Positives = 382/680 (56%), Gaps = 56/680 (8%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 +V V++ + YL YA+S I RA+PD+RDG KPVHRRI+ AM E G D+ F+KS Sbjct: 11 DVTPVTIEEEMRRSYLDYAMSVIVSRALPDVRDGLKPVHRRILFAMKEGGYDYNKPFRKS 70 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 ARIVG+V+GK HPHGD ++YD++VR+AQ F R PLI GQGNFG++DGD AAA RYTEAR Sbjct: 71 ARIVGDVMGKYHPHGDSAIYDAMVRMAQSFSMRLPLIDGQGNFGSMDGDKAAAMRYTEAR 130 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 M + A +++ +D+D VDF Y++ EP+V P+++PNLL NG GIAVGMAT+IP HN Sbjct: 131 MARSAHFLIEDIDKDTVDFGPNYDDSSVEPLVLPARYPNLLVNGAGGIAVGMATNIPPHN 190 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 + E+ +A A+IDNP+I+ E+++E + GPDFPTGG I+ R I + GRG +R R Sbjct: 191 LGEVIDACCAMIDNPDITPEEVMELVPGPDFPTGGTIL-GRSGIRAAQLTGRGSVVMRGR 249 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314 +EEV + I+VTE+PYQV K+R+IE+IAEL+ K+I + D+RDES D VR+V+ Sbjct: 250 CHIEEVRKDREAIIVTEVPYQVNKARMIEQIAELVRDKKIEGVSDLRDESDRDGVRVVIE 309 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K ++ D+++ ++ + ++T F +N L+ GR PQ+M L I+ +L R EV+ R Sbjct: 310 IKRDAI-ADVVLAQLYKFTPLQTSFGVNSLALNGGR-PQMMTLREIIAAFLRFREEVITR 367 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP--------------------- 413 R+ F + R +L GL IA NID++I +IR P Sbjct: 368 RTIFELGKARDRAHVLVGLSIAVANIDDMIKLIREASDPAVAREQLMARKWPALDVEPLI 427 Query: 414 -------KPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466 + ++ +SL+E Q AIL+LRL L LE +I EL + + ++ +L+ Sbjct: 428 RLIDEPGRGIVDGTYSLSEVQAKAILDLRLHRLTGLERDKIGDELREIGEQIKEFLEILS 487 Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526 S + + E+ +++ F+ RRTT + ++ + +I +E + V ++N Sbjct: 488 SRPKLLEVMRNELIDMRNQFATP-----RRTT---IEDSEFEADIEDLIAREDMVVTVTN 539 Query: 527 RGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAG 578 G+I R+ K S + K+ D L T +L S+ G AY L Sbjct: 540 TGYIKRVPLSTYRAQKRGGKGRSGMSMKDEDFLSQVFVTSTHTPVLFFSSTGIAYKLKVY 599 Query: 579 NLLSG--RGHGEAIQLLIDLNHNQDIVTAFVY--DSTC----KLLVVSSKGNAFIVEESE 630 L G + G+A+ ++ L + I T D T + +SKG+ S+ Sbjct: 600 RLPLGTPQARGKAMVNILPLGEGETISTVMPMPEDETTWGDLHVAFATSKGDVRRNLLSD 659 Query: 631 IIANTRKGKTFLKVSSEEKM 650 + GK +K++ E++ Sbjct: 660 FVDIRANGKIAMKLNDGEQL 679 >gi|146318729|ref|YP_001198441.1| DNA gyrase subunit A [Streptococcus suis 05ZYH33] gi|146320933|ref|YP_001200644.1| DNA gyrase subunit A [Streptococcus suis 98HAH33] gi|253751833|ref|YP_003024974.1| DNA gyrase subunit A [Streptococcus suis SC84] gi|253753656|ref|YP_003026797.1| DNA gyrase subunit A [Streptococcus suis P1/7] gi|253755463|ref|YP_003028603.1| DNA gyrase subunit A [Streptococcus suis BM407] gi|18253149|dbj|BAB83960.1| DNA gyrase subunit A [Streptococcus suis] gi|145689535|gb|ABP90041.1| DNA gyrase subunit A [Streptococcus suis 05ZYH33] gi|145691739|gb|ABP92244.1| DNA gyrase subunit A [Streptococcus suis 98HAH33] gi|251816122|emb|CAZ51745.1| DNA gyrase subunit A [Streptococcus suis SC84] gi|251817927|emb|CAZ55705.1| DNA gyrase subunit A [Streptococcus suis BM407] gi|251819902|emb|CAR45950.1| DNA gyrase subunit A [Streptococcus suis P1/7] gi|292558403|gb|ADE31404.1| DNA gyrase subunit A [Streptococcus suis GZ1] gi|319758185|gb|ADV70127.1| DNA gyrase subunit A [Streptococcus suis JS14] Length = 814 Score = 415 bits (1066), Expect = e-113, Method: Compositional matrix adjust. Identities = 233/618 (37%), Positives = 375/618 (60%), Gaps = 40/618 (6%) Query: 12 LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71 + ++N+ V+L ++ ++ YA+S I RA+PD+RDG KPVHRRI++ M+E+G+ Sbjct: 1 MQDKNLVTVNLTNEMKSSFIDYAMSVIVSRALPDVRDGLKPVHRRILYGMNELGITPDKP 60 Query: 72 FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131 KKSARI G+V+GK HPHGD ++Y+++VR+AQ + R+ L+ G GNFG++DGD AAA RY Sbjct: 61 HKKSARITGDVMGKYHPHGDSAIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRY 120 Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191 TEARM+++A +L+ ++++ V+F D Y+ + EP V P++FPNLL NGT+GIAVGMAT+I Sbjct: 121 TEARMSKIALEMLRDINKNTVNFADNYDASEREPEVLPARFPNLLVNGTTGIAVGMATNI 180 Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251 P HN+ E EA ++DNPE++ +++E + GPDFPTG +++ + I +Y G+G Sbjct: 181 PPHNLGETIEAVKLVMDNPEVTTREIMEVLPGPDFPTGALVM-GKSGIHRAYETGKGSIV 239 Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVR 310 +R+R +EE G G IVVTE PY V KS++ E I +L+ KRI + +RDES E VR Sbjct: 240 LRSRTEIEEYGNGRERIVVTEFPYMVNKSKVQEHIVKLVQEKRIEGITAVRDESNREGVR 299 Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370 V+ + R ++++ ++F + ++T F NM + G VP+++ + IL+ ++ H++E Sbjct: 300 FVIEVR-RDASANVILNNLFKQTQLQTNFSFNMLAIQNG-VPKILSVRQILESYIEHQKE 357 Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQ 427 V+ RR+ F + + R IL+GLLIA +IDE+I IIRN + + ++ +F L+E Q Sbjct: 358 VVTRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRNSETDAIAQAELMEKFDLSERQ 417 Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487 AIL++RLR L LE +I+SE D L+A + +L ++ I E+ EVK ++ Sbjct: 418 SQAILDMRLRRLTGLERDKIQSEYDELVALIADLADILAKPERVVQIIKDELEEVKRKYA 477 Query: 488 KSTDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSL--------KSHSV 538 RRT E+ + +L+ + +IE+ + + +SN+G+I+ L K Sbjct: 478 DP-----RRT---ELMVGEVLSLEDEDLIEETDVLITLSNQGYIKRLAQDEFQAQKRGGR 529 Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLLSG 583 + K+ D ++ + T DR+L + G+ Y LP NLL Sbjct: 530 GVQGTGVKDDDFVRELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKL 589 Query: 584 RGHGEAIQLLIDLNHNQD 601 EAIQ +I++ +Q+ Sbjct: 590 E-ENEAIQTIINVTKDQE 606 >gi|257783821|ref|YP_003179038.1| DNA gyrase, A subunit [Atopobium parvulum DSM 20469] gi|257472328|gb|ACV50447.1| DNA gyrase, A subunit [Atopobium parvulum DSM 20469] Length = 901 Score = 415 bits (1066), Expect = e-113, Method: Compositional matrix adjust. Identities = 261/713 (36%), Positives = 407/713 (57%), Gaps = 34/713 (4%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 +K L ++ +L Y++S I RA+PD+RDG KPVHRRI++AMSE G+ KKSA Sbjct: 52 LKPTDLSSEMKTSFLEYSMSVIVARALPDVRDGLKPVHRRILYAMSEAGITPNRPHKKSA 111 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 VGEV+GK HPHGD ++YDS+VR++Q F R PLI G GNFG+IDGD AA RYTEAR+ Sbjct: 112 WAVGEVMGKYHPHGDSAIYDSMVRMSQDFSMRLPLIDGHGNFGSIDGDPPAAMRYTEARL 171 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 T+ A +L ++++ VD + Y+E +EP V P++FPNLL NG+SGIAVGMAT+IP HN+ Sbjct: 172 TRSAMEMLAELNKNTVDLQPNYDESLTEPAVLPARFPNLLVNGSSGIAVGMATNIPPHNL 231 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ +A +IDNPE++ E+L+ + GPDFPTGGII+ + + I ++Y GRG VRA+ Sbjct: 232 GEVTDAVCMMIDNPEVTTEELMTVLPGPDFPTGGIIMGT-QGIKDAYETGRGSITVRAKV 290 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLFP 315 VE+V G +VVTEIPYQV K L EKIA+ + K+I + D+RDES + +RIV+ Sbjct: 291 HVEQVKSGRQRLVVTEIPYQVNKGLLQEKIAQAVNEKKIEGISDMRDESNRKGMRIVIDL 350 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 K R P +++ +++ + +++ F + +++ + VP+ + L IL+ ++ H+ +V+ RR Sbjct: 351 K-RDAVPQVVLNNLYKKTQLQSNFGI-IDLALVDGVPRTLSLREILRHYIDHQIDVVRRR 408 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432 + F + +RV IL+GLL A NIDEI+ IIR ++ + K M RF L E Q +AIL Sbjct: 409 TEFDLDKAQKRVHILEGLLTAVDNIDEIVHIIRSSQDDAEAKKRMNERFGLDEIQGEAIL 468 Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492 +RLR L L + E+ L + + LL ++ IA E+RE+ ++ Sbjct: 469 QMRLRRLTGLARQDLVDEISQLRLDIAYYEDLLAHEEKILAVIADELREISNRYAD---- 524 Query: 493 GRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWI--------RSLKSHSVDLSAL 543 +RRT ++S D L + +I +E + V +++ G++ RS K + + Sbjct: 525 -KRRT---QISEQDIQNLDVEDLIAEEDMVVTVTHAGYVKRVPVEIYRSQKRGGKGVQGV 580 Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAY-----TLPAGNLLS-GRGHGEAIQLLIDLN 597 KE D ++ A T D +L + GK Y LP G+ + G I+ L + Sbjct: 581 SLKENDFVENLFVASTHDYVLFFTNLGKVYRLKVHELPVGSRTTKGSAIINVIETLAEGE 640 Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV- 656 + ++T + L+ + +G SE + G + + +++ V +V Sbjct: 641 KVKAVITTRDFPEDNYLMFATKQGMVKKTAMSEYDRTRKDGLIAINLKDGDELVNVRRVH 700 Query: 657 TGDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVICFKICEG 708 GD V + + K ++F + M RG GVR + K G + ++ +I G Sbjct: 701 PGDKVVLCSSDGKAILFDEAEARSMGRGTSGVRGITLK--GNATMLGMEITNG 751 >gi|21231028|ref|NP_636945.1| DNA gyrase subunit A [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66768967|ref|YP_243729.1| DNA gyrase subunit A [Xanthomonas campestris pv. campestris str. 8004] gi|188992081|ref|YP_001904091.1| DNA gyrase subunit A [Xanthomonas campestris pv. campestris str. B100] gi|21112653|gb|AAM40869.1| DNA gyrase subunit A [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66574299|gb|AAY49709.1| DNA gyrase subunit A [Xanthomonas campestris pv. campestris str. 8004] gi|167733841|emb|CAP52047.1| DNA gyrase subunit A [Xanthomonas campestris pv. campestris] Length = 899 Score = 415 bits (1066), Expect = e-113, Method: Compositional matrix adjust. Identities = 267/745 (35%), Positives = 392/745 (52%), Gaps = 75/745 (10%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 V+L + + YL YA+S I RA+PD RDG KPVHRR++ AM+E+G A+ KSARIV Sbjct: 11 VNLEDEMRKSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMNELGAHSNKAYFKSARIV 70 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGDQSVYD+LVR+AQPF RY ++ GQGNFG++DGDSAAA RYTE+RM+++ Sbjct: 71 GDVIGKYHPHGDQSVYDTLVRMAQPFSLRYLMVDGQGNFGSVDGDSAAAMRYTESRMSRL 130 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A ++ ++++ VDF+ Y+E++ EP V P++FP+LL NG++GIAVGMAT+IP HN+ E Sbjct: 131 AHELMADIEKETVDFQPNYDEKELEPTVMPTRFPSLLVNGSAGIAVGMATNIPPHNLTEA 190 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 A +ALID PE+ IE L+EYI GPDFPT GII I YR GRG R+RA+ VE Sbjct: 191 INACIALIDTPELDIEGLMEYIPGPDFPTAGII-NGTAGIAAGYRTGRGRVRIRAKADVE 249 Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319 G IVVTEIPYQV K+RLIEKIAEL+ K++ + ++RDES +D + R Sbjct: 250 VADNGREAIVVTEIPYQVNKARLIEKIAELVKEKKLEGISELRDESDKDGMRIYIEIKRG 309 Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379 ++++ +++ + ME+ F +NM L GR PQ+M L +L+ ++ HRREV+ RR+ F Sbjct: 310 ESAEVVLNNLYQQTQMESVFGINMVALVDGR-PQLMNLKQMLEAFIRHRREVVTRRTIFE 368 Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSR---------------- 420 ++ R +L+GL +A NIDE+I +I+ P+ M+++ Sbjct: 369 LRKARARAHVLEGLTVALANIDEMIELIKTSANPQEARERMLAKTWEPGLVGALLGAAGA 428 Query: 421 ------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKID 462 + L+E Q IL +RL L LE+ ++ E LL + + Sbjct: 429 EASKPEDLAPGVGLSNGFYQLSEVQASQILEMRLHRLTGLEQEKLTDEYKQLLEVIQGLI 488 Query: 463 SLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITV 522 +L + I E+ ++E + G R T S D L +I E + V Sbjct: 489 RILENPDVLLQVIRDELINIREEY------GDARRTEIRHSEEDLDILD--LIAPEDVVV 540 Query: 523 VISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT 574 +S+ G+ + + + SA KE D + +T D +L ++ GK + Sbjct: 541 TLSHAGYAKRQPVSAYRAQRRGGRGRSAASTKEEDFIDQLWLVNTHDTLLTFTSSGKVFW 600 Query: 575 LPAGNL--LSGRGHGEAIQLLIDLNHN---QDIVTAFVYDSTCKLLVVSSKGNAFIVEES 629 LP L G I I L Q ++ Y + + G S Sbjct: 601 LPVHQLPEAGSNARGRPIINWIPLESGERVQAVLPVREYADNRYVFFATRNGTVKKTPLS 660 Query: 630 EIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSRG---- 684 E +GK + + + + V GD V + N K + F + M R Sbjct: 661 EFAFRLARGKIAINLDEGDALVGVALTDGDRDVLLFASNGKTVRFGESTVRSMGRTATGV 720 Query: 685 KGVRLQ----------SYKDGGISD 699 +G+RL S + GG+ D Sbjct: 721 RGIRLAKGEEVVSLIVSERAGGVED 745 >gi|320183333|gb|EFW58187.1| DNA gyrase subunit A [Shigella flexneri CDC 796-83] Length = 875 Score = 415 bits (1066), Expect = e-113, Method: Compositional matrix adjust. Identities = 256/659 (38%), Positives = 380/659 (57%), Gaps = 65/659 (9%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + V++ L+ YL YA+S I RA+PD+RDG KPVHRR+++AM+ +G D+ A+KKSA Sbjct: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG+IDGDSAAA RYTE R+ Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 ++A ++ ++++ VDF D Y+ + P V P+K PNLL NG+SGIAVGMAT+IP HN+ Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ LA ID+ +ISIE L+E+I GPDFPT II R I E+YR GRG +RAR Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAII-NGRRGIEEAYRTGRGKVYIRARA 246 Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314 VE + G I+V EIPYQV K+RLIEKIAEL+ KR+ + +RDES +D +RIV+ Sbjct: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K ++ ++++ +++ + ++ F +NM L G+ P++M L I+ ++ HRREV+ R Sbjct: 307 VKRDAVG-EVVLNNLYSQTQLQVSFGINMVALHHGQ-PKIMNLKDIIAAFVRHRREVVTR 364 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----------- 420 R+ F ++ R IL+ L +A NID II +IR+ P K +V+ Sbjct: 365 RTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAML 424 Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457 + LTE Q AIL+LRL+ L LE ++ E LL + Sbjct: 425 ERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQ 484 Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517 ++ +L S + I E+ V+E F G +R T + AD + +I + Sbjct: 485 IAELLRILGSADRLMEVIREELELVREQF------GDKRRTEITANSADINL--EDLITQ 536 Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569 E + V +S +G+++ + + SA KE D + L A+T D IL S+ Sbjct: 537 EDVVVTLSLQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSR 596 Query: 570 GKAYTLPAGNLLSG-RG-HGEAIQLLIDLNHNQDIVTAFV----YDSTCKLLVVSSKGN 622 G+ Y++ L RG G I L+ L ++ I TA + ++ K+ + ++ G Sbjct: 597 GRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERI-TAILPVTEFEEGVKVFMATANGT 654 >gi|332678777|gb|AEE87906.1| DNA gyrase subunit A [Francisella cf. novicida Fx1] Length = 868 Score = 415 bits (1066), Expect = e-113, Method: Compositional matrix adjust. Identities = 264/761 (34%), Positives = 425/761 (55%), Gaps = 79/761 (10%) Query: 11 TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70 +++ + ++++ L++ YL YA+S I RA+PD+RDG KPVHRR++ AM+E+ + Sbjct: 2 SIITKESSSINIEKELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELSNYYNR 61 Query: 71 AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130 +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG++DGDS AA R Sbjct: 62 PYKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYTLVDGQGNFGSVDGDSPAAMR 121 Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190 YTE RM ++ +L +D++ VDF Y+ + P V P++ PNLL NG+SGIAVGMAT+ Sbjct: 122 YTEIRMEKLTHELLIDIDKETVDFSPNYDNTELVPDVLPTRVPNLLVNGSSGIAVGMATN 181 Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250 IP HN+ E+ +ALIDNP ++IE+L+EYI PDFPTG I + I+E+Y+ GRG Sbjct: 182 IPPHNMTEVINGTIALIDNPNLTIEELIEYIPAPDFPTGSYI-NGTDGILEAYKTGRGRV 240 Query: 251 RVRARWCV-EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED- 308 +RA+ + E+ G I+VTEIPYQV K++L+EKIAEL+ K++ + ++RDES +D Sbjct: 241 IMRAKADIHEDEASGKAQIIVTEIPYQVNKAKLVEKIAELVKDKKVAGISELRDESDKDG 300 Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368 +R+V+ K R P++++ +++ + ++ F +NM LS R P+++ L IL++++ HR Sbjct: 301 IRVVIDLK-RDESPEVVLNTLYAQTQLQCSFGINMVALSDNR-PKLLNLKEILEQFIKHR 358 Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----- 420 +EV+ RR+ F ++ R IL+GLL++ NIDE+I +I+ P K M++R Sbjct: 359 KEVVTRRTIFELRKSKERAHILEGLLLSLANIDEMIELIKASPSPADAKESMLARSWNGS 418 Query: 421 ------------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSE 450 ++LTE Q DAIL LRL L LE+ +I +E Sbjct: 419 MVKSMLEGVDVKMYRKETLASHYGIQVDSSYNLTEEQADAILALRLHRLTGLEQDKIVNE 478 Query: 451 LDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATL 510 L+ + + S+L+ + + E+ E+++ + G +R + SR D Sbjct: 479 FKELIDRIKYLISILSDINELIRVVKDELVEIRDNY------GDQRKSEIIESRLD--LT 530 Query: 511 QQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDR 562 ++ +I +E + V +S G++++ K V SA KE DS+ + A T D Sbjct: 531 REDLIAEEDMVVTLSMDGYVKTQPLSMYNAQKRGGVGKSATKTKEEDSIFKLMLASTHDT 590 Query: 563 ILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV----YDSTCK 613 +L S+ G K Y P + +S G I ++ L ++ I TA + ++ Sbjct: 591 MLCFSSLGRVYWSKVYDFPVASRIS---KGRPINNILPLEKDERI-TAMMPISQFNEGWY 646 Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLI 672 + + + G V+ SE GK + ++ +++ V GD + + + K + Sbjct: 647 VFMATKLGRVKKVDLSEFARPRSTGKIAIGLNDGDELSYVALTDGDKQIMMFSDAGKAIR 706 Query: 673 FSIDQIPEMSRG----KGVRLQSYKDGGISDVICFKICEGL 709 F + M R G+RL + + I VI EG+ Sbjct: 707 FDESDVRAMGRSAAGVTGMRL--HHNQKIVSVIVTNPDEGI 745 >gi|302148642|pdb|2XCS|B Chain B, The 2.1a Crystal Structure Of S. Aureus Gyrase Complex With Gsk299423 And Dna gi|302148643|pdb|2XCS|D Chain D, The 2.1a Crystal Structure Of S. Aureus Gyrase Complex With Gsk299423 And Dna gi|304445659|pdb|2XCT|B Chain B, The Twinned 3.35a Structure Of S. Aureus Gyrase Complex With Ciprofloxacin And Dna gi|304445660|pdb|2XCT|D Chain D, The Twinned 3.35a Structure Of S. Aureus Gyrase Complex With Ciprofloxacin And Dna gi|304445665|pdb|2XCT|S Chain S, The Twinned 3.35a Structure Of S. Aureus Gyrase Complex With Ciprofloxacin And Dna gi|304445666|pdb|2XCT|U Chain U, The Twinned 3.35a Structure Of S. Aureus Gyrase Complex With Ciprofloxacin And Dna Length = 692 Score = 414 bits (1065), Expect = e-113, Method: Compositional matrix adjust. Identities = 218/503 (43%), Positives = 328/503 (65%), Gaps = 23/503 (4%) Query: 4 DNISNSNTLVEENVKAVSLRFA---------------LEERYLAYALSTIKERAIPDLRD 48 D + N +E+N +L FA + E +L YA+S I RA+PD+RD Sbjct: 182 DVVENRRQFIEDNAVYANLDFAELPQSRINERNITSEMRESFLDYAMSVIVARALPDVRD 241 Query: 49 GFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQR 108 G KPVHRRI++ ++E G+ ++KKSARIVG+V+GK HPHGD S+Y+++VR+AQ F R Sbjct: 242 GLKPVHRRILYGLNEQGMTPDKSYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYR 301 Query: 109 YPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVF 168 YPL+ GQGNFG++DGD AAA R+TEARMT++ +L+ +++D +DF D Y+ + EP V Sbjct: 302 YPLVDGQGNFGSMDGDGAAAMRFTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVL 361 Query: 169 PSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPT 228 P++FPNLLANG SGIAVGMAT+IP HN+ E+ L+L NP+ISI +L+E I GPDFPT Sbjct: 362 PARFPNLLANGASGIAVGMATNIPPHNLTELINGVLSLSKNPDISIAELMEDIEGPDFPT 421 Query: 229 GGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAE 288 G+I+ + I +Y GRG ++R+R +EE G G IVVTEIP+QV K+R+IEKIAE Sbjct: 422 AGLIL-GKSGIRRAYETGRGSIQMRSRAVIEERGGGRQRIVVTEIPFQVNKARMIEKIAE 480 Query: 289 LIIAKRIPLLEDIRDESA--EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL 346 L+ K+I + D+RDE++ VR+V+ + + + +++ +++ + ++T F +NM L Sbjct: 481 LVRDKKIDGITDLRDETSLRTGVRVVIDVR-KDANASVILNNLYKQTPLQTSFGVNMIAL 539 Query: 347 SMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAI 406 GR P+++ L L +L H++ V+ RR+ + ++ R IL+GL IA +IDEII+ Sbjct: 540 VNGR-PKLINLKEALVHYLEHQKTVVRRRTQYNLRKAKDRAHILEGLRIALDHIDEIIST 598 Query: 407 IRNEDKPKPVMVS---RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDS 463 IR D K M S RF L+E Q AIL++RLR L LE +I++E + LL ++++ Sbjct: 599 IRESDTDKVAMESLQQRFKLSEKQAQAILDMRLRRLTGLERDKIEAEYNELLNYISELET 658 Query: 464 LLNSGKQQWNQIACEIREVKEIF 486 +L + + E+ E+++ F Sbjct: 659 ILADEEVLLQLVRDELTEIRDRF 681 >gi|295694694|ref|YP_003587932.1| DNA gyrase, A subunit [Bacillus tusciae DSM 2912] gi|295410296|gb|ADG04788.1| DNA gyrase, A subunit [Bacillus tusciae DSM 2912] Length = 810 Score = 414 bits (1065), Expect = e-113, Method: Compositional matrix adjust. Identities = 252/688 (36%), Positives = 403/688 (58%), Gaps = 33/688 (4%) Query: 26 LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85 L + +L YA+S I RAIPD+RDG KPVHRRI++ M +G+ +KKSA +VG+V+ K Sbjct: 16 LRQSFLDYAMSVIVSRAIPDVRDGLKPVHRRILYQMHLLGMTPDKPYKKSAWVVGQVLAK 75 Query: 86 LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145 HPHGD +VYD+LVRLAQ F RY L+ G GNFG++DGD AAA RYTEAR++++A +L+ Sbjct: 76 FHPHGDAAVYDALVRLAQDFSTRYLLVDGHGNFGSVDGDGAAAMRYTEARLSKIALELLR 135 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 + ++ VDF D Y+ + EP+V PS+FPN+L NG++GIAVGMAT+IP HN+ E+ + + Sbjct: 136 DIQKETVDFGDNYDGSEKEPLVLPSRFPNILVNGSTGIAVGMATNIPPHNLGEVIDGVIH 195 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265 LID+P+ +E+L+++I GPDFPTG +I+ RE I+++YR GRG +RA +EE G Sbjct: 196 LIDHPDAGVEELMQHIKGPDFPTGALIL-GREGILDAYRTGRGSIILRAATQIEEASGGK 254 Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325 IVVTEIPYQV K+RL+EKIAEL+ KRI + D+RDES ++ R + P ++ Sbjct: 255 TRIVVTEIPYQVNKARLVEKIAELVREKRIDGITDLRDESDRRGMRIVIELRRDVKPRVV 314 Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385 + ++F + ++T + + M L GR P+V+ L +L+ +L H+ +V+ RR+++ ++ + Sbjct: 315 LNNLFKHTALQTSYGVIMLCLVDGR-PRVLNLGEMLRYYLRHQEDVIRRRTTYDLKKAEA 373 Query: 386 RVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAILNLRLRSLRKL 442 R IL+GL IA +ID +I +IR ++ + ++ +F L+E Q AIL++RL+ L L Sbjct: 374 RAHILEGLRIALDHIDAVIELIRGSKTVEEARTGLIEQFHLSEEQAQAILDMRLQRLTGL 433 Query: 443 EEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEV 502 E +I E L+ + +++ ++L K+ I E+ ++K +K D R R T E Sbjct: 434 ERQKIDEEYAELVEKIKELRAILADEKKILGVIREELLDIK---AKYGDERRTRITAGEG 490 Query: 503 SRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIA 554 D + +I E + V +S+ G+I +S + ++A+ KE D ++ Sbjct: 491 EIED-----EDLIPMEEVAVTLSHDGYIKRQPMSLYKSQRRGGRGITAMGTKEEDFVEHL 545 Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAFVYDST- 611 + +L + GK Y L A + L G I L++++ + I ST Sbjct: 546 FITSSHHYLLFFTNKGKVYRLKAYEVPELGRAAKGTPIVNLLNVDQGEKISAVVPIRSTD 605 Query: 612 -CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV-VKVT-GDHVAVVGENR 668 + L+++++ + N R+G + +S E +L+ V++T G ++G Sbjct: 606 GGQYLIMATREGTIKKTPLDEFENIRRG-GLVAISLRENDELIAVRMTDGSRELILGTRS 664 Query: 669 KLLI-FSIDQIPEMSRG----KGVRLQS 691 + I F + M RG K V LQ Sbjct: 665 GMAIRFPETDVRSMGRGAAGVKAVDLQG 692 >gi|168237286|ref|ZP_02662344.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|194735318|ref|YP_002115344.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|194710820|gb|ACF90041.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197289683|gb|EDY29046.1| DNA gyrase, A subunit [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] Length = 878 Score = 414 bits (1065), Expect = e-113, Method: Compositional matrix adjust. Identities = 276/747 (36%), Positives = 410/747 (54%), Gaps = 69/747 (9%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + V++ L+ YL YA+S I RA+PD+RDG KPVHRR+++AM+ +G D+ A+KKSA Sbjct: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD +VY ++VR+AQPF RY L+ GQGNFG+IDGDSAAA RYTE R+ Sbjct: 68 RVVGDVIGKYHPHGDFAVYGTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 ++A ++ ++++ VDF D Y+ + P V P+K PNLL NG+SGIAVGMAT+IP HN+ Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ LA IDN +ISIE L+E+I GPDFPT II R I E+YR GRG +RAR Sbjct: 188 TEVINGCLAYIDNEDISIEGLMEHIPGPDFPTAAII-NGRRGIEEAYRTGRGKVYIRARA 246 Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314 VE + G I+V EIPYQV K+RLIEKIAEL+ KR+ + +RDES +D +RIV+ Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKDGMRIVIE 306 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K ++ ++++ +++ + ++ F +NM L G+ P++M L I+ ++ HRREV+ R Sbjct: 307 VKRDAVG-EVVLNNLYSQTQLQVSFGINMVALHHGQ-PKIMNLKDIISAFVRHRREVVTR 364 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----------- 420 R+ F ++ R IL+ L IA NID II +IR P K ++SR Sbjct: 365 RTIFELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAALISRPWDLGNVAAML 424 Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457 + LTE Q AIL+LRL+ L LE ++ E LL + Sbjct: 425 ERAGDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQ 484 Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517 ++ +L S + I E+ +++ F G R T + AD + +I + Sbjct: 485 IAELLHILGSADRLMEVIREEMELIRDQF------GDERRTEITANSADINI--EDLISQ 536 Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569 E + V +S++G+++ + + SA KE D + L A+T D IL S+ Sbjct: 537 EDVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSR 596 Query: 570 GKAYTLPAGNLL-SGRG-HGEAIQLLIDLNHNQDIVTAFV----YDSTCKLLVVSSKGNA 623 G+ Y + L + RG G I L+ L N+ I TA + Y+ + + ++ G Sbjct: 597 GRLYWMKVYQLPEASRGARGRPIVNLLPLEANERI-TAILPVREYEEGVNVFMATASGTV 655 Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMS 682 +E G + ++ +++ V +G D V + K++ F D + M Sbjct: 656 KKTALTEFSRPRSAGIIAVNLNDGDELIGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAMG 715 Query: 683 R-GKGVRLQSYKDGGISDVICFKICEG 708 R GVR K G V+ I G Sbjct: 716 RTATGVR--GIKLAGDDKVVSLIIPRG 740 >gi|254456167|ref|ZP_05069596.1| DNA gyrase, A subunit [Candidatus Pelagibacter sp. HTCC7211] gi|207083169|gb|EDZ60595.1| DNA gyrase, A subunit [Candidatus Pelagibacter sp. HTCC7211] Length = 859 Score = 414 bits (1065), Expect = e-113, Method: Compositional matrix adjust. Identities = 226/598 (37%), Positives = 355/598 (59%), Gaps = 45/598 (7%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 + N+K +S+ + YL+YA+S I RA+PD+RDG KPVHRRI++AM + G D+ F+ Sbjct: 9 DNNIKLISMHDEMSSSYLSYAMSVIVSRALPDIRDGLKPVHRRILYAMYKGGYDWSKQFR 68 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSARIVG+VIGK HPHGDQSVYD+LVR+ Q F PL+ GQGNFG+IDGD AAA RYTE Sbjct: 69 KSARIVGDVIGKYHPHGDQSVYDALVRMVQDFSMSLPLVQGQGNFGSIDGDPAAAMRYTE 128 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 R+++V++ ++ ++++ + F+ Y+E + EP V P+++PNLL NG GIAVGMATSIP Sbjct: 129 TRLSKVSQYLIDDIEKNTISFKSNYDETEKEPTVLPAQYPNLLVNGAGGIAVGMATSIPP 188 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ EI LALIDN +I I +L++Y+ GPDFPTGG+I+ ++ I Y GRG F++R Sbjct: 189 HNLGEIINGTLALIDNKDIKIRELMKYVPGPDFPTGGVII-GKDIIKHGYNNGRGSFKIR 247 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312 VE + G +V+T IPYQV KS L E+IA+L+ K+I ++DIRDES E +R+ Sbjct: 248 GEVSVESLKNGRERLVITSIPYQVNKSVLNERIAQLVREKKIEGIKDIRDESNREGIRVA 307 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 + +N ++P+ + ++ + +E+ F N + G+ P+ L L +L+ R +++ Sbjct: 308 IDLRN-GVEPETIKRQLYKNTQIESSFGFNTLAIVQGK-PKTCTLKDFLSNFLSFREDIV 365 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN----EDKPKPVMVSR-------- 420 +++ F +Q + R IL GL ++ N+D+II IIR+ ED + ++ ++ Sbjct: 366 IKKTKFDLQKAEERAHILIGLSVSVENLDKIIKIIRSSKTPEDAKQAILKTKWKINKSQK 425 Query: 421 -------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467 +SL+E QV AIL LRL+ L L +I+ E+ L + +++S Sbjct: 426 LISLVEGKKGKGLYSLSEPQVIAILELRLQKLTALGINEIEVEIKKLAELIARYKKIISS 485 Query: 468 GKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNR 527 K+ I+ E++ +KE F+ + RR V D + I+K+ + + ++ + Sbjct: 486 KKELLKVISEELKNIKEKFA----VPRRTKIIDAVLNYD----IEETIQKQSVIITVTLQ 537 Query: 528 GWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPA 577 G+I + K S + ++ DS+ L +T +L ST+G Y + A Sbjct: 538 GYIKRGSLDGVKQQKRGGKGKSGITTRDQDSVVQTLSVNTHTSVLFFSTEGLVYKVKA 595 >gi|118574930|gb|ABL07042.1| DNA gyrase subunit A [Arcobacter cryaerophilus] Length = 860 Score = 414 bits (1065), Expect = e-113, Method: Compositional matrix adjust. Identities = 248/636 (38%), Positives = 379/636 (59%), Gaps = 43/636 (6%) Query: 10 NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69 N +++ V L +++ YL Y++S I RA+PD +DG KPVHRRI++AM ++ L Sbjct: 3 NLFENQDIINVKLEDSVKASYLDYSMSVIIGRALPDAKDGLKPVHRRILYAMHDLNLTSK 62 Query: 70 AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129 A+KKSARIVG+VIGK HPHGD SVYD+LVR+AQ F R PL+ GQGNFG++DGDSAAA Sbjct: 63 VAYKKSARIVGDVIGKYHPHGDTSVYDALVRMAQSFSMRAPLVDGQGNFGSVDGDSAAAM 122 Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189 RYTEARMT++AE +L+ +D+D V+F Y++ EP V P++ P LL NG+ GIAVGMAT Sbjct: 123 RYTEARMTRIAEEVLRDLDKDTVNFVPNYDDTMKEPAVLPTRVPTLLLNGSEGIAVGMAT 182 Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249 IP HN+ E+ +A L LIDNP L+E+I GPDFPTGG I R I+++Y GRG Sbjct: 183 KIPPHNLGELLDAILHLIDNPSSEAIDLMEFIQGPDFPTGGTIF-GRRGIIDAYNTGRGR 241 Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED- 308 R+RA+ +E + +V+ E+PYQV K+RLIE IA L K+I + ++RDES D Sbjct: 242 VRIRAKHHIESKAKKD-VVVIDELPYQVNKARLIELIANLAKDKQIEGIAEVRDESDRDG 300 Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368 +R+V+ K ++ ++++ +++ + MET F + + + + P+V L IL +L+HR Sbjct: 301 IRVVIELKKDAM-AEIVLNNLYKSTPMETTFGIIL-LAVYNKEPKVFNLPEILNIFLSHR 358 Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTE 425 + V+ RR+ F ++ R IL+GL IA NIDE++ IIR N+ + K + SRF L+ Sbjct: 359 KTVIIRRTIFDLEKAKARAHILEGLKIALDNIDEVVKIIRASANDTEAKDNLSSRFGLSS 418 Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485 Q AIL++RL L L+ ++++E L+ +++++L S ++ I E+ E+KE Sbjct: 419 IQSQAILDMRLGRLTGLQRDKLEAEYAELMLLIAELEAILRSEEKLNEIIKEELNEIKEK 478 Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545 FS R T E S D+ ++ +I EP+ V I++ G+++ + S + Sbjct: 479 FSTP------RKTEIEDS-YDEIDIED-LIPNEPMVVTITHNGYVKRVPIKSYERQ---- 526 Query: 546 KEGDSLKIALHAH------------TTDRILLLSTDG-----KAYTLPAGNLLSGRGHGE 588 K G K+A+ H T D ++ ++ G K Y +P G S G+ Sbjct: 527 KRGGKGKVAVTTHDDDFIERFFVSNTHDTLMFVTNMGQLYWLKVYKIPEG---SRTAKGK 583 Query: 589 AIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKG 621 A+ LI+L ++ I+ +D + L+ + G Sbjct: 584 AVVNLINLRADEKIMAIIPTPDFDESKSLVFFTRNG 619 >gi|313640117|gb|EFS04738.1| DNA gyrase, A subunit [Listeria seeligeri FSL S4-171] Length = 592 Score = 414 bits (1065), Expect = e-113, Method: Compositional matrix adjust. Identities = 227/571 (39%), Positives = 357/571 (62%), Gaps = 22/571 (3%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 + + ++L + +L YA+S I RA+PD+RDG KPVHRRI++AM+++G+ A+KK Sbjct: 7 QRITEINLNKEMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYAMNDLGMTSDKAYKK 66 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 SARIVGEVIGK HPHGD +VY ++VR+AQ F R L+ G GNFG++DGD AAA RYTEA Sbjct: 67 SARIVGEVIGKYHPHGDTAVYFTMVRMAQDFSYRNMLVDGHGNFGSVDGDMAAAMRYTEA 126 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 RM++++ +L+ +++D +D+ D Y+ + EPV+ P++FPNLL NG+SGIAVGMAT+IP+H Sbjct: 127 RMSKISMELLRDINKDTIDYADNYDGSEREPVILPARFPNLLVNGSSGIAVGMATNIPTH 186 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 ++ E+ + LAL ++P+ISI +L+EYI GPDFPT G+I+ R I +Y GRG VR Sbjct: 187 HLGEVIDGVLALSNDPDISIRELMEYIPGPDFPTAGMIM-GRSGIRRAYESGRGSITVRG 245 Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314 R +EE G IV+TEIPYQV K+RL+E+IAEL K+I + + DES ++ Sbjct: 246 RVDIEEKKNGKETIVITEIPYQVNKARLVERIAELAREKKIDGITSLNDESDRSGMRIVI 305 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 R + +++ ++F ++ ++T F +NM L + P+V+ L IL +L H++ V+ R Sbjct: 306 EVRRDISASVIVNNLFKMTALQTTFGINMLAL-VDNHPKVLNLKEILYYYLEHQKVVIRR 364 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAI 431 R+ F ++ + R IL+GL IA NID II +IR D K ++++F+L++ Q AI Sbjct: 365 RTEFELRKAEARAHILEGLRIALDNIDAIIKLIRGSKTSDVAKEGLMTQFNLSDKQAQAI 424 Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491 L++RL+ L LE +I+ E NL+A + ++L ++ I E+ E+K ++ Sbjct: 425 LDMRLQRLTGLEREKIEEEYQNLVALINDLKAILADDERILEIIREELEEIKVKYAD--- 481 Query: 492 LGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWI--------RSLKSHSVDLSA 542 +RRT E+ D +L+ + +I +E + + ++ RG+I RS + + Sbjct: 482 --KRRT---EILAGDLVSLEDEDLIPEEEVAITLTKRGYIKRLPLSTYRSQRRGGRGIQG 536 Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573 + E D ++ + T D +L + GK Y Sbjct: 537 MSTHEDDFVEHLVATSTHDTLLFFTNTGKVY 567 >gi|90412222|ref|ZP_01220228.1| putative DNA topoisomerase (ATP-hydrolyzing) [Photobacterium profundum 3TCK] gi|90326946|gb|EAS43331.1| putative DNA topoisomerase (ATP-hydrolyzing) [Photobacterium profundum 3TCK] Length = 892 Score = 414 bits (1065), Expect = e-113, Method: Compositional matrix adjust. Identities = 249/637 (39%), Positives = 374/637 (58%), Gaps = 65/637 (10%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + V++ L+ YL YA+S I RA+PD+RDG KPVHRR++ AM+ +G D+ A+KKSA Sbjct: 8 ITPVNIEDELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKKSA 67 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG++DGDSAAA RYTE RM Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRM 127 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 +++A +L +D++ VD+ Y+ + P V P++ PNLL NG+SGIAVGMAT+IP HN+ Sbjct: 128 SKIAHELLADLDKETVDYVPNYDGTEFIPAVMPTRVPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ LA IDN +I++E+L++YI GPDFPT +I R+ I+++Y GRG +RA+ Sbjct: 188 GEVINGCLAFIDNEDITVEQLMDYIPGPDFPTAALI-NGRKGIIDAYHTGRGKVYMRAKA 246 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFP 315 +E G I+VTEIPYQV K+RLIEKIAEL+ K++ + +RDES +D +RIV+ Sbjct: 247 SIEVEKNGRETIIVTEIPYQVNKARLIEKIAELVKDKKVEGISALRDESDKDGMRIVVEC 306 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 K ++ ++++ +++ + ++T F +NM L G+ P++ L +LK ++ HRREV+ RR Sbjct: 307 KRDAVG-EVILNNLYSQTQLQTTFGINMVALDHGQ-PKLFSLKEMLKCFVNHRREVVTRR 364 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK----------------PVMVS 419 + + ++ R +L+GL IA +NIDEII +I++ P+ M+ Sbjct: 365 TIYELRKARERAHLLEGLAIALVNIDEIIELIKSAPTPQVAREELLARPWQLGDVAAMLE 424 Query: 420 R---------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458 R + LTE Q AIL LRL L LE +I E LL Sbjct: 425 RAGVDAARPEWLEPQFGIHGGQYFLTEPQAQAILELRLHRLTGLEHEKILEEYKGLLDVI 484 Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518 E++ +L S ++ I E+ VKE F+ RRT E++ A + +I +E Sbjct: 485 EELLLILGSPERLMEVIRDELYAVKEQFNDE-----RRT---EITAASHDIDLEDLITQE 536 Query: 519 PITVVISNRGWIRS--LKSHSVDLS------ALHFKEGDSLKIALHAHTTDRILLLSTDG 570 + V +S+ G+++ L + A K+ D ++ L A+T D IL S+ G Sbjct: 537 DVVVTLSHEGYVKYQILSDYEAQRRGGKGKIATRMKDEDFIERLLVANTHDTILCFSSRG 596 Query: 571 -----KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602 K Y LP L S G+ I ++ L ++ I Sbjct: 597 RMYWLKVYQLP---LASRTARGKPIVNILPLEEDERI 630 >gi|41639|emb|CAA68611.1| gyrase alpha subunit [Escherichia coli] Length = 878 Score = 414 bits (1065), Expect = e-113, Method: Compositional matrix adjust. Identities = 255/659 (38%), Positives = 381/659 (57%), Gaps = 65/659 (9%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + V++ L+ YL YA+S I RA+PD+RDG KPVHRR+++AM+ +G D+ A+KKSA Sbjct: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD +VY+++VR+AQPF RY L+ GQGNFG+IDGDSAAA RYTE R+ Sbjct: 68 RVVGDVIGKYHPHGDSAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 ++A ++ ++++ VDF D Y+ + P V P+K PNLL NG+SGIAVGMAT+IP HN+ Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ LA ID+ +ISIE L+E+I GPDFPT II R I E+YR GRG +RAR Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAII-NGRRGIEEAYRTGRGKVYIRARA 246 Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314 VE + G I+V EIPYQV K+RLIEKIAEL+ KR+ + +RDES +D +RIV+ Sbjct: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K ++ ++++ +++ + ++ F +NM L G+ P++M L I+ ++ HRREV+ R Sbjct: 307 VKRDAVG-EVVLNNLYSQTQLQVSFGINMVALHHGQ-PKIMNLKDIIAAFVRHRREVVTR 364 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----------- 420 R+ F ++ R IL+ L +A NID II +IR+ P K +V+ Sbjct: 365 RTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAML 424 Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457 + LTE Q AIL+LRL+ L LE ++ E LL + Sbjct: 425 ERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQ 484 Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517 ++ +L S + I E+ V+E F G +R T + AD + +I + Sbjct: 485 IAELLRILGSADRLMEVIREELELVREQF------GDKRRTEITANSADINL--EDLITQ 536 Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569 E + V +S++G+++ + + SA KE D + L A+T D IL S+ Sbjct: 537 EDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSR 596 Query: 570 GKAYTLPAGNLLSG-RG-HGEAIQLLIDLNHNQDIVTAFV----YDSTCKLLVVSSKGN 622 G+ Y++ L RG G I L+ L ++ I TA + ++ K+ + ++ G Sbjct: 597 GRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERI-TAILPVTEFEEGVKVFMATANGT 654 >gi|126737721|ref|ZP_01753451.1| DNA gyrase subunit A [Roseobacter sp. SK209-2-6] gi|126721114|gb|EBA17818.1| DNA gyrase subunit A [Roseobacter sp. SK209-2-6] Length = 868 Score = 414 bits (1065), Expect = e-113, Method: Compositional matrix adjust. Identities = 240/596 (40%), Positives = 359/596 (60%), Gaps = 51/596 (8%) Query: 35 LSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSV 94 +S I RAIPDLRDG KPVHRRI++AM E G +++KSAR VG+V+GK HPHGD ++ Sbjct: 1 MSVIVSRAIPDLRDGLKPVHRRILYAMHETGNSHDKSYRKSARPVGDVMGKYHPHGDSAI 60 Query: 95 YDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDF 154 YD+LVR+AQ F PL+ GQGNFG++DGD+ AA RYTE RM + A +L +D++ VDF Sbjct: 61 YDALVRMAQDFSMSLPLLDGQGNFGSMDGDNPAAMRYTEVRMDKPAAFMLSDIDKETVDF 120 Query: 155 RDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISI 214 +D Y+ +D EP V P++FPN+L NG GIAVGMAT+IP HN+ E+ +A LALID+P+++ Sbjct: 121 QDNYDGKDQEPTVLPARFPNMLVNGAGGIAVGMATNIPPHNLGEVVDATLALIDDPDLTS 180 Query: 215 EKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIP 274 E+L+EY+ GPDFPTGG+++ R ++Y GRG +R++ VEE+ + + IVV EIP Sbjct: 181 EQLIEYVPGPDFPTGGVML-GRSGARKAYLEGRGSVIIRSKTRVEEIRKDRYAIVVDEIP 239 Query: 275 YQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKNRSLDPDLLMESIFMLS 333 YQV K+ +IEKIAE + KRI + ++DES + VR+V+ K R P++++ +F S Sbjct: 240 YQVNKASMIEKIAEQVREKRIEGVSHVQDESDRNGVRVVVELK-RDATPEVVLNQLFRFS 298 Query: 334 DMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGL 393 M+T F NM L+ GR P+ + L L ++ R +V+ RR+++ ++ R IL GL Sbjct: 299 PMQTSFGCNMLALNGGR-PEQLTLRRFLTSFIDFREDVVARRTAYLLRKARERSHILCGL 357 Query: 394 LIAYLNIDEIIAIIRNE---------------------------DKPKPVMV--SRFSLT 424 +A N+DE++A IR+ D P M + ++L+ Sbjct: 358 AVAVSNVDEVVATIRSSADAAEARQKLMTRRWPASDIAGYIQLIDDPTHKMNEDATYNLS 417 Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484 E Q AIL LRL+ L ++ ++ EL+ L A+ ++ +L+S ++ + IA E+REV+E Sbjct: 418 ETQARAILELRLQRLTQIGVKEVTDELEELAAKIKEYLDILSSRERIMSIIADELREVRE 477 Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSH 536 F+ RRT + S + +IE+E + V +++ G+I R+ K Sbjct: 478 QFAVP-----RRTEIVDWS---GDMEDEDLIEREDMVVTVTSGGYIKRTPLADFRAQKRG 529 Query: 537 SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL-LSGR-GHGEAI 590 LS + KE D + A+T ++L +TDG Y L L SGR G G+AI Sbjct: 530 GKGLSGMQTKEEDVVTNLFVANTHTQLLFFTTDGMVYKLKTWRLPQSGRTGKGKAI 585 >gi|283786032|ref|YP_003365897.1| DNA gyrase subunit A [Citrobacter rodentium ICC168] gi|282949486|emb|CBG89099.1| DNA gyrase subunit A [Citrobacter rodentium ICC168] Length = 878 Score = 414 bits (1065), Expect = e-113, Method: Compositional matrix adjust. Identities = 274/748 (36%), Positives = 413/748 (55%), Gaps = 71/748 (9%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + V++ L+ YL YA+S I RA+PD+RDG KPVHRR+++AM+ +G D+ A+KKSA Sbjct: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG+IDGDSAAA RYTE R+ Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 ++A ++ ++++ VDF D Y+ + P V P+K PNLL NG+SGIAVGMAT+IP HN+ Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ LA ID+ +ISIE L+E+I GPDFPT II R I E+YR GRG +RAR Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAII-NGRRGIEEAYRTGRGKVYIRARA 246 Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314 VE + G I+V EIPYQV K+RLIEKIAEL+ KR+ + +RDES +D +RIV+ Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKDGMRIVIE 306 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K ++ ++++ +++ + ++ F +NM L G+ P++M L I+ ++ HRREV+ R Sbjct: 307 VKRDAVG-EVVLNNLYSQTQLQVSFGINMVALHHGQ-PKIMNLKDIISAFVRHRREVVTR 364 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----------- 420 R+ F ++ R IL+ L IA NID II +IR P K +++R Sbjct: 365 RTIFELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAALIARPWDLGNVAAML 424 Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457 + LTE Q AIL+LRL+ L LE ++ E LL + Sbjct: 425 ERAGDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQ 484 Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ-QAMIE 516 ++ +L S + I E+ +++ F + RRT A+ A + + +I Sbjct: 485 IAELLHILGSADRLMEVIREELELIRDQFGDA-----RRTEIT----ANSADINIEDLIN 535 Query: 517 KEPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568 +E + V +S++G+++ + + SA KE D + L A+T D IL S+ Sbjct: 536 QEDVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSS 595 Query: 569 DGKAYTLPAGNLL-SGRG-HGEAIQLLIDLNHNQDIVTAFV----YDSTCKLLVVSSKGN 622 G+ Y + L + RG G I L+ L ++ I TA + Y+ + + ++ G Sbjct: 596 RGRLYWMKVYQLPEASRGARGRPIVNLLPLEADERI-TAILPVREYEEGVNVFMATASGT 654 Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEM 681 +E G + ++ +++ V +G D V + K++ F D + M Sbjct: 655 VKKTALTEFSRPRSAGIIAVNLNEGDELIGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAM 714 Query: 682 SR-GKGVRLQSYKDGGISDVICFKICEG 708 R GVR K G V+ I G Sbjct: 715 GRTATGVR--GIKLAGEDKVVSLIIPRG 740 >gi|212703757|ref|ZP_03311885.1| hypothetical protein DESPIG_01805 [Desulfovibrio piger ATCC 29098] gi|212672725|gb|EEB33208.1| hypothetical protein DESPIG_01805 [Desulfovibrio piger ATCC 29098] Length = 851 Score = 414 bits (1065), Expect = e-113, Method: Compositional matrix adjust. Identities = 237/599 (39%), Positives = 365/599 (60%), Gaps = 24/599 (4%) Query: 6 ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65 +S N+ +++ VS+ L + YL Y+LS I RAIPD RDG KPVHRRI++A E+ Sbjct: 1 MSEQNSGIQQ--PQVSIEKELRKSYLEYSLSVIIGRAIPDARDGLKPVHRRIMYAQYELA 58 Query: 66 LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125 + KKSARIVG+VIGK HPHGD +VYD+LVRLAQ F R PL+ GQGNFG+IDGD+ Sbjct: 59 NSYNRPHKKSARIVGDVIGKYHPHGDSAVYDALVRLAQDFSMRDPLVDGQGNFGSIDGDA 118 Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185 AAA RYTE RM+++A L +D++ VDFR Y+ EP V P+K PNLL NG+SGIAV Sbjct: 119 AAAMRYTEVRMSRLASEFLADIDKETVDFRPNYDNTLQEPSVLPTKVPNLLLNGSSGIAV 178 Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245 GMAT+IP HN+ E+C+A L+D+P+ +I L+E + GPDFPT G + + + ++Y Sbjct: 179 GMATNIPPHNLGELCDALQMLLDDPQCTISDLMEVVKGPDFPTRGFVYAGK-GLSDAYHT 237 Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305 GRG +VR R VEE +G IV+ EIP+ + KS L+EKIA L+ +I + D+RDES Sbjct: 238 GRGTVKVRGRLEVEERKKGLQAIVIREIPFGLNKSSLVEKIAGLVNDHKIDGISDLRDES 297 Query: 306 -AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364 + +R+V+ K R PD+++ S++ + +ET F +NM + R P ++ L L + Sbjct: 298 DRKGIRVVIDLK-RGTIPDIVINSLYKYTPLETSFGINMLAVVDNR-PVLLNLKTALSCF 355 Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRF 421 + HRREV+ RR+ + +Q + R IL+GL IA +IDE++A+IR + D+ + ++ RF Sbjct: 356 VDHRREVVIRRTRYDLQKAEARAHILEGLRIAIDHIDEVVALIRASASPDEARAGLMQRF 415 Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481 L+E Q AIL++RL+ L L+ ++ +E LL + E S+L + + +++ EIRE Sbjct: 416 ELSEVQARAILDMRLQRLTGLQREELMAEYRELLEKIEFFKSVLENPEVLRSELKREIRE 475 Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSVD 539 ++E F+ RRT ++ A + +I E + + +S RG+++ SL+++ Sbjct: 476 IRETFATP-----RRTEV--LTDALGGIDIEDLIPDEEVVITLSRRGYMKRTSLENYQQQ 528 Query: 540 ------LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL 592 ++ALH + D ++ L + L + G+ + L + G + + + Sbjct: 529 KRGGKGIAALHTSDDDYVQEFLTTTNHQYLCLFTNKGRMHQLKVHQVPEGSRTAKGVHI 587 >gi|2731385|gb|AAB95117.1| DNA gyrase [Serratia marcescens] Length = 880 Score = 414 bits (1065), Expect = e-113, Method: Compositional matrix adjust. Identities = 273/730 (37%), Positives = 412/730 (56%), Gaps = 73/730 (10%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + V++ L+ YL YA+S I RA+PD+RDG KPVHRR+++AMS +G D+ +KKSA Sbjct: 8 ITPVNIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSVLGNDWNKPYKKSA 67 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG++DGDSAAA RYTE RM Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEVRM 127 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 +++A +L ++++ VDF Y+ + P V P+K PNLL NG+SGIAVGMAT+IP HN+ Sbjct: 128 SKIAHELLADLEKETVDFVPNYDGTEQIPAVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ LA ID+ ISIE L+E+I GPDFPT II R I E+YR GRG +RAR Sbjct: 188 AEVVNGCLAYIDDENISIEGLMEHIPGPDFPTAAII-NGRRGIEEAYRTGRGKVYLRARA 246 Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314 VE + G I+V EIPYQV K+RLIEKIAEL+ KR+ + +RDES +D +RIV+ Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K ++ ++++ +++ L+ ++ F +NM L G+ P+++ L IL+ ++ HRREV+ R Sbjct: 307 VKRDAVG-EVVLNNLYALTQLQVTFGINMVALHQGQ-PKLLNLKDILEAFVRHRREVVTR 364 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS--------------- 419 R+ F ++ R IL+ L IA NID II +IR P V+ Sbjct: 365 RTIFELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKVALVAQPWDLGNVSAML 424 Query: 420 ----------------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457 ++ LTE Q AIL+LRL+ L LE ++ E LL Sbjct: 425 ERAGDDAARPEWLEPEFGIRDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLNF 484 Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517 ++ +L S ++ I E+ VKE+++ GRR E++ + +I + Sbjct: 485 IAELIFILESPERLMEVIREELVAVKELYND----GRR----TEITANTSDINIEDLINQ 536 Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569 E + V +S++G+++ + + SA KE D + L A+T D IL S+ Sbjct: 537 EDVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSR 596 Query: 570 GKAYTLPAGNLL-SGRG-HGEAIQLLIDLNHNQDIVTAFV----YDSTCKLLVVSSKGNA 623 G+ Y + L + RG G I L+ L ++ I TA + Y+ + + ++ G Sbjct: 597 GRLYWMKVYQLPEASRGARGRPIVNLLPLEADERI-TAILPVREYEEGRHVFMATASGT- 654 Query: 624 FIVEESEIIANTR-KGKTFLKVSSEEKMKLV-VKVT--GDHVAVVGENRKLLIFSIDQIP 679 V+++ + +R + + V+ E +L+ V +T + V + N K++ F Q+ Sbjct: 655 --VKKTALTEFSRPRSAGIIAVNLNEGDELIGVDLTDGSNEVMLFSANGKVVRFPETQVR 712 Query: 680 EMSR-GKGVR 688 M R GVR Sbjct: 713 SMGRTATGVR 722 >gi|163756042|ref|ZP_02163158.1| DNA topoisomerase, ATP-hydrolyzing (DNA gyrase) (DNA topoisomerase II), subunit A [Kordia algicida OT-1] gi|161323916|gb|EDP95249.1| DNA topoisomerase, ATP-hydrolyzing (DNA gyrase) (DNA topoisomerase II), subunit A [Kordia algicida OT-1] Length = 849 Score = 414 bits (1065), Expect = e-113, Method: Compositional matrix adjust. Identities = 236/616 (38%), Positives = 372/616 (60%), Gaps = 33/616 (5%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 E + +++ ++ Y+ Y++S I RA+PD+RDG KPVHRR++ M E+G+ +A KK Sbjct: 5 EKLIPINIEDEMKSAYIDYSMSVIVSRALPDVRDGMKPVHRRVLFGMHELGVRSSSAHKK 64 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 SARIVGEV+GK HPHGD SVYD++VR+AQ + RY L+ GQGNFG+IDGDS AA RYTEA Sbjct: 65 SARIVGEVLGKYHPHGDTSVYDAMVRMAQEWSLRYMLVDGQGNFGSIDGDSPAAMRYTEA 124 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 RM ++++ +L +D+D VD +++ EP V P++ P LL NG SGIAVGMAT++P H Sbjct: 125 RMRKISDDMLADIDKDTVDHSLNFDDTLKEPTVLPTRVPGLLINGASGIAVGMATNMPPH 184 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 N+ E+ + A IDN +I I++L++++ PDFPTGGII + + E+++ GRG +R Sbjct: 185 NLSEVVDGIHAYIDNNDIEIDELIQHVKAPDFPTGGIIY-GYDGVREAFKTGRGRIVMRG 243 Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVL 313 + +EEV +G CI+VTEIPYQV K+ +I+K A+LI K+I + IRDES + +RIV Sbjct: 244 KAVMEEV-QGRECIIVTEIPYQVNKADMIKKTADLINDKKIDGISSIRDESDRKGMRIVY 302 Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373 K ++ P++++ ++ + +++ F +N L GR PQ++ L ++ ++ HR EV+ Sbjct: 303 ILKRDAI-PNIVLNKLYKYTALQSSFSVNNIALVHGR-PQLLNLKDMIHYFVEHRHEVVT 360 Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDA 430 RR+ + ++ + R IL+GL+IA NIDE+IAIIR N + + ++ RF LTE Q A Sbjct: 361 RRTQYELKKAEERAHILEGLIIASDNIDEVIAIIRGSQNAEDARNNLIKRFELTEIQAKA 420 Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490 I+ +RLR L LE+ ++++E D+++ E +L + ++ N I E+ +K+ + Sbjct: 421 IVEMRLRQLTGLEQDKLRAEYDDIMKSIEDYRDILANKSRRMNIIKEELEVIKDKY---- 476 Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSH------SVDLSA 542 G R + E + D + + +I E + + IS+ G+I+ SL + V Sbjct: 477 --GDERRSMIEYAGGDVSI--EDLIPDEKVVITISHAGYIKRTSLTEYKRQNRGGVGQKG 532 Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKA-----YTLPAGNLLSGRGHGEAIQLLIDLN 597 + D L+ +L + GK Y +P G+ S G AIQ LI++ Sbjct: 533 SATRNEDFLEHLFVGTNHQYMLFFTQQGKCFWMRVYEIPEGSKTS---KGRAIQNLINIE 589 Query: 598 HNQDIVTAFVYDSTCK 613 + D V AF+ K Sbjct: 590 KD-DKVKAFICTQNLK 604 >gi|28189068|dbj|BAC56218.1| DNA gyrase subunit A [Streptococcus suis] Length = 814 Score = 414 bits (1065), Expect = e-113, Method: Compositional matrix adjust. Identities = 233/618 (37%), Positives = 375/618 (60%), Gaps = 40/618 (6%) Query: 12 LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71 + ++N+ V+L ++ ++ YA+S I RA+PD+RDG KPVHRRI++ M+E+G+ Sbjct: 1 MQDKNLVTVNLTNEMKSSFIDYAMSVIVSRALPDVRDGLKPVHRRILYGMNELGITPDKP 60 Query: 72 FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131 KKSARI G+V+GK HPHGD ++Y+++VR+AQ + R+ L+ G GNFG++DGD AAA RY Sbjct: 61 HKKSARITGDVMGKYHPHGDSAIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRY 120 Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191 TEARM+++A +L+ ++++ V+F D Y+ + EP V P++FPNLL NGT+GIAVGMAT+I Sbjct: 121 TEARMSKIALEMLRDINKNTVNFADNYDASEREPEVLPARFPNLLVNGTTGIAVGMATNI 180 Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251 P HN+ E EA ++DNPE++ +++E + GPDFPTG +++ + I +Y G+G Sbjct: 181 PPHNLGETIEAVKLVMDNPEVTTREIMEVLPGPDFPTGALVM-GKSGIHRAYETGKGSIV 239 Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVR 310 +R+R +EE G G IVVTE PY V KS++ E I +L+ KRI + +RDES E VR Sbjct: 240 LRSRTEIEEYGNGRERIVVTEFPYMVNKSKVQEHIVKLVQEKRIEGITAVRDESNREGVR 299 Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370 V+ + R ++++ ++F + ++T F NM + G VP+++ + IL+ ++ H++E Sbjct: 300 FVIEVR-RDASANVILNNLFKQTQLQTNFSFNMLAIQNG-VPKILSVRQILESYIEHQKE 357 Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQ 427 V+ RR+ F + + R IL+GLLIA +IDE+I IIRN + + ++ +F L+E Q Sbjct: 358 VVTRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRNSETDAIAQAELMEKFDLSERQ 417 Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487 AIL++RLR L LE +I+SE D L+A + +L ++ I E+ EVK ++ Sbjct: 418 SQAILDMRLRRLTGLERDKIQSEYDELVALIADLADILAKPERVVQIIKDELEEVKRKYA 477 Query: 488 KSTDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSL--------KSHSV 538 RRT E+ + +L+ + +IE+ + + +SN+G+I+ L K Sbjct: 478 DP-----RRT---ELMVGEVLSLEDEDLIEETDVLITLSNQGYIKRLAQDEFQAQKRGGR 529 Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLLSG 583 + K+ D ++ + T DR+L + G+ Y LP NLL Sbjct: 530 GVQGTGVKDDDFVRELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKL 589 Query: 584 RGHGEAIQLLIDLNHNQD 601 EAIQ +I++ +Q+ Sbjct: 590 E-ENEAIQTIINVTKDQE 606 >gi|16799086|ref|NP_469354.1| DNA gyrase subunit A [Listeria innocua Clip11262] gi|16412428|emb|CAC95240.1| DNA gyrase subunit A [Listeria innocua Clip11262] Length = 842 Score = 414 bits (1065), Expect = e-113, Method: Compositional matrix adjust. Identities = 227/571 (39%), Positives = 355/571 (62%), Gaps = 22/571 (3%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 + + ++L + +L YA+S I RA+PD+RDG KPVHRRI++AM+++G+ A+KK Sbjct: 7 QRITEINLNKEMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYAMNDLGMTSDKAYKK 66 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 SARIVGEVIGK HPHGD +VY ++VR+AQ F R L+ G GNFG++DGD AAA RYTEA Sbjct: 67 SARIVGEVIGKYHPHGDTAVYFTMVRMAQDFSYRNMLVDGHGNFGSVDGDMAAAMRYTEA 126 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 RM++++ +L+ +++D +D+ D Y+ + EPV+ P++FPNLL NG+SGIAVGMAT+IP+H Sbjct: 127 RMSKISMELLRDINKDTIDYADNYDGSEREPVILPARFPNLLVNGSSGIAVGMATNIPTH 186 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 ++ E+ + LAL +PEISI L+E+I GPDFPT G+I+ R I +Y GRG VR Sbjct: 187 HLGEVIDGVLALSHDPEISIRDLMEHIPGPDFPTAGMIM-GRSGIRRAYESGRGSITVRG 245 Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314 R +EE G IV+TEIPYQV K+RL+E+IAEL K+I + + DES ++ Sbjct: 246 RVDIEEKKNGKETIVITEIPYQVNKARLVERIAELAREKKIDGITSLNDESDRSGMRIVI 305 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 R + +++ ++F ++ ++T F +NM L + P+V+ L IL +L H++ V+ R Sbjct: 306 EVRRDISASVIVNNLFKMTALQTTFGINMLAL-VDNHPKVLNLKEILYHYLEHQKVVIRR 364 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAI 431 R+ F ++ + R IL+GL IA NID II +IR D K ++++F+L++ Q AI Sbjct: 365 RTEFELRKAEARAHILEGLRIALDNIDAIIKLIRGSKTSDVAKEGLMTQFNLSDKQAQAI 424 Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491 L++RL+ L LE +I+ E NL+A + ++L ++ I E+ E+K ++ Sbjct: 425 LDMRLQRLTGLEREKIEEEYQNLVALINDLKAILADDERILEIIREELEEIKVKYAD--- 481 Query: 492 LGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWI--------RSLKSHSVDLSA 542 +RRT E+ D +L+ + +I +E + + ++ RG+I RS + + Sbjct: 482 --KRRT---EILAGDLVSLEDEDLIPEEEVAITLTKRGYIKRLPLSTYRSQRRGGRGIQG 536 Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573 + E D ++ + T D +L + GK Y Sbjct: 537 MSTHEDDFVEHLVATSTHDTLLFFTNTGKVY 567 >gi|254444720|ref|ZP_05058196.1| DNA gyrase, A subunit [Verrucomicrobiae bacterium DG1235] gi|198259028|gb|EDY83336.1| DNA gyrase, A subunit [Verrucomicrobiae bacterium DG1235] Length = 820 Score = 414 bits (1065), Expect = e-113, Method: Compositional matrix adjust. Identities = 244/608 (40%), Positives = 357/608 (58%), Gaps = 35/608 (5%) Query: 3 VDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62 ++NISN E + + S+ ++ Y+ Y++S I RA+PD RDG KPV RRI++AM Sbjct: 1 MENISN------ERISSTSITDIMQTAYIDYSMSVIVSRALPDARDGLKPVQRRILYAML 54 Query: 63 EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122 GL AF K A +VGEV+ HPHGD SVYD+LVR+AQ +V RYPLI QGNFG++D Sbjct: 55 REGLLHNRAFDKCAGVVGEVLKNYHPHGDSSVYDTLVRMAQKWVMRYPLIDPQGNFGSVD 114 Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182 GDS AAYRYTEAR+T +AE +L+ +DED VDF Y E +EP V P+ PNLL NG++G Sbjct: 115 GDSPAAYRYTEARLTAIAEDLLRNIDEDTVDFVANYKESTTEPSVLPAGLPNLLMNGSTG 174 Query: 183 IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242 IAVGMAT+IP HN+ E+ + A IDNP I+I +L E I GPDFPTGG I+ R+ I E Sbjct: 175 IAVGMATNIPPHNLDELIDGVCAQIDNPNITIAELGELIQGPDFPTGGRII-GRKGIDEY 233 Query: 243 YRLGRGGFRVRARWCVEEV-GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301 GRG R+R E + G I+++ IPY V ++ L+ KIAEL+ K + + D+ Sbjct: 234 MNTGRGIVRMRGTVTSEPMEGGDRERIIISTIPYNVNRATLVTKIAELVSTKEVEGISDL 293 Query: 302 RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361 RDES E+ RIV+ K R P++++ ++ + +E F +NM L R P+ M + ++ Sbjct: 294 RDESDENTRIVIELK-RGEFPEVIISKLYKKTALEASFGVNMLALDNKR-PKQMNMKEMI 351 Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMV 418 ++ HRREV++RR++FR++ + R IL+G IA N+D+ I IIR N D+ K + Sbjct: 352 NCYIDHRREVIYRRTAFRLKKAEDRAHILEGYKIALDNLDDFIKIIRSSANRDEAKVRLQ 411 Query: 419 SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE 478 ++ L++ QV AIL+LRL L +E +I+ E LL E++ S+L + + + I E Sbjct: 412 EKYPLSDRQVTAILDLRLYQLTGMERGKIEEEYAELLKLIEELRSILENEYKLLSIIKEE 471 Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI-------- 530 + E+KE ++ CE+ + + M KE + IS++G+I Sbjct: 472 LSELKEKYTSPRK--------CEIVPYEGDISKADMTPKEGCFITISHKGFIKRVSDSEF 523 Query: 531 RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLS-GR 584 R+ K + + E D ++ A+T D I+ +G K Y LP G+ S GR Sbjct: 524 RTQKRGGKGVQGGNTYEDDFVEHIFTANTHDTIMFFMNNGRVYVEKVYELPEGSRTSKGR 583 Query: 585 GHGEAIQL 592 +QL Sbjct: 584 SINNVLQL 591 >gi|302148634|pdb|2XCR|B Chain B, The 3.5a Crystal Structure Of The Catalytic Core (B'a' Region) Of Staphylococcus Aureus Dna Gyrase Complexed With Gsk299423 And Dna gi|302148635|pdb|2XCR|D Chain D, The 3.5a Crystal Structure Of The Catalytic Core (B'a' Region) Of Staphylococcus Aureus Dna Gyrase Complexed With Gsk299423 And Dna gi|302148638|pdb|2XCR|S Chain S, The 3.5a Crystal Structure Of The Catalytic Core (B'a' Region) Of Staphylococcus Aureus Dna Gyrase Complexed With Gsk299423 And Dna gi|302148639|pdb|2XCR|U Chain U, The 3.5a Crystal Structure Of The Catalytic Core (B'a' Region) Of Staphylococcus Aureus Dna Gyrase Complexed With Gsk299423 And Dna Length = 726 Score = 414 bits (1065), Expect = e-113, Method: Compositional matrix adjust. Identities = 218/503 (43%), Positives = 328/503 (65%), Gaps = 23/503 (4%) Query: 4 DNISNSNTLVEENVKAVSLRFA---------------LEERYLAYALSTIKERAIPDLRD 48 D + N +E+N +L FA + E +L YA+S I RA+PD+RD Sbjct: 216 DVVENRRQFIEDNAVYANLDFAELPQSRINERNITSEMRESFLDYAMSVIVARALPDVRD 275 Query: 49 GFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQR 108 G KPVHRRI++ ++E G+ ++KKSARIVG+V+GK HPHGD S+Y+++VR+AQ F R Sbjct: 276 GLKPVHRRILYGLNEQGMTPDKSYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYR 335 Query: 109 YPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVF 168 YPL+ GQGNFG++DGD AAA R+TEARMT++ +L+ +++D +DF D Y+ + EP V Sbjct: 336 YPLVDGQGNFGSMDGDGAAAMRFTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVL 395 Query: 169 PSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPT 228 P++FPNLLANG SGIAVGMAT+IP HN+ E+ L+L NP+ISI +L+E I GPDFPT Sbjct: 396 PARFPNLLANGASGIAVGMATNIPPHNLTELINGVLSLSKNPDISIAELMEDIEGPDFPT 455 Query: 229 GGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAE 288 G+I+ + I +Y GRG ++R+R +EE G G IVVTEIP+QV K+R+IEKIAE Sbjct: 456 AGLIL-GKSGIRRAYETGRGSIQMRSRAVIEERGGGRQRIVVTEIPFQVNKARMIEKIAE 514 Query: 289 LIIAKRIPLLEDIRDESA--EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL 346 L+ K+I + D+RDE++ VR+V+ + + + +++ +++ + ++T F +NM L Sbjct: 515 LVRDKKIDGITDLRDETSLRTGVRVVIDVR-KDANASVILNNLYKQTPLQTSFGVNMIAL 573 Query: 347 SMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAI 406 GR P+++ L L +L H++ V+ RR+ + ++ R IL+GL IA +IDEII+ Sbjct: 574 VNGR-PKLINLKEALVHYLEHQKTVVRRRTQYNLRKAKDRAHILEGLRIALDHIDEIIST 632 Query: 407 IRNEDKPKPVMVS---RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDS 463 IR D K M S RF L+E Q AIL++RLR L LE +I++E + LL ++++ Sbjct: 633 IRESDTDKVAMESLQQRFKLSEKQAQAILDMRLRRLTGLERDKIEAEYNELLNYISELET 692 Query: 464 LLNSGKQQWNQIACEIREVKEIF 486 +L + + E+ E+++ F Sbjct: 693 ILADEEVLLQLVRDELTEIRDRF 715 >gi|328946262|gb|EGG40406.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus sanguinis SK1087] Length = 826 Score = 414 bits (1065), Expect = e-113, Method: Compositional matrix adjust. Identities = 237/615 (38%), Positives = 370/615 (60%), Gaps = 40/615 (6%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 + N+ V+L ++ ++ YA+S I RA+PD+RDG KPVHRRI++ M+E+G+ K Sbjct: 10 DRNLVNVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPEKPHK 69 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSARI G+V+GK HPHGD S+Y+++VR+AQ + RY L+ G GNFG++DGD AAA RYTE Sbjct: 70 KSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYTE 129 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 ARM+++A +L+ +++D VD+ D Y+ + EPVV P++FPNLL NG +GIAVGMAT+IP Sbjct: 130 ARMSKIALEMLRDINKDTVDYIDNYDASEREPVVLPARFPNLLVNGATGIAVGMATNIPP 189 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E +A ++DNPE + ++E + GPDFPTG +++ + I +Y G+G +R Sbjct: 190 HNLGESIDAVKLVMDNPEATTRDIMEVLPGPDFPTGALVM-GKSGIHRAYETGKGSIVLR 248 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312 +R +EE+ G IVVTE PY V K+++ E I L+ KRI + +RDES E VR V Sbjct: 249 SRTEIEEMKNGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVRFV 308 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 + + R +++ ++F L+ M+T F NM + G VP+++ L IL ++ H++EV+ Sbjct: 309 IEVR-RDASAHVILNNLFKLTQMQTNFSFNMLAIQNG-VPKILSLREILLAYIEHQKEVV 366 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVD 429 RR++F + + R IL GLLIA +IDE+I IIRN + + + ++++F L+E Q Sbjct: 367 TRRTAFDKEKAEARAHILAGLLIALDHIDEVILIIRNSETDAEAQAELMAKFELSERQSQ 426 Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489 AIL++RLR L LE +I+SE D L+A + +L ++ I E+ EVK F+ Sbjct: 427 AILDMRLRRLTGLERDKIQSEYDELIALIADLADILAKPERVIAIIKEELDEVKRKFADD 486 Query: 490 TDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSL--------KSHSVDL 540 RRT E+ + +L+ + +IE+ + + +SN+G+I+ L K + Sbjct: 487 -----RRT---ELMVGEVLSLEDEDLIEEADVLITLSNKGYIKRLNQAEFTAQKRGGRGV 538 Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLLSGRG 585 K+ D +K + T DR+L + G+ Y LP NLL Sbjct: 539 QGTGVKDDDFVKELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLK-LD 597 Query: 586 HGEAIQLLIDLNHNQ 600 GE IQ +I++ ++ Sbjct: 598 EGETIQTIINVQQDR 612 >gi|312867801|ref|ZP_07728007.1| DNA gyrase, A subunit [Streptococcus parasanguinis F0405] gi|311096864|gb|EFQ55102.1| DNA gyrase, A subunit [Streptococcus parasanguinis F0405] Length = 818 Score = 414 bits (1065), Expect = e-113, Method: Compositional matrix adjust. Identities = 238/631 (37%), Positives = 383/631 (60%), Gaps = 41/631 (6%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 ++N+ V+L ++ ++ YA+S I RA+PD+RDG KPVHRRI++ M+E+G+ K Sbjct: 3 DKNLIDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHK 62 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSARI G+V+GK HPHGD S+Y+++VR+AQ + RY L+ G GNFG++DGD AAA RYTE Sbjct: 63 KSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYTE 122 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 ARM+++A +L+ ++++ VDF D Y+ + EP+V P++FPNLL NG +GIAVGMAT+IP Sbjct: 123 ARMSKIALEMLRDINKNTVDFADNYDASEREPLVLPARFPNLLVNGATGIAVGMATNIPP 182 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E +A ++DNPE++ +L+E + GPDFPTG +++ + I ++Y G+G +R Sbjct: 183 HNLGETIDAVKLMMDNPEVTTRELMEVLPGPDFPTGALVM-GKSGIHKAYETGKGSIVLR 241 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312 +R +E G IVVTE PY V K+++ E I L+ KRI + +RDES E VR V Sbjct: 242 SRTEIEVTKSGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 + + R ++++ ++F ++ M+T F NM + G VP+++ L IL ++ H+ EV+ Sbjct: 302 IEVR-RDASANVILNNLFKMTQMQTNFGFNMLAIQNG-VPKILSLRQILGAYIEHQTEVV 359 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLTENQVD 429 RR+ F + + R IL+GLLIA +IDE+I IIRN + + + ++++F L+E Q Sbjct: 360 TRRTIFDKEKAEARAHILEGLLIALDHIDEVIRIIRNSRTDAEAQAELMAKFKLSERQSQ 419 Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489 AIL++RLR L LE +I+SE D+L+A + +L+ ++ I E+ EVK F + Sbjct: 420 AILDMRLRRLTGLERDKIQSEYDDLVALIADLADILSKPERVATIIKEELEEVKRKFGDA 479 Query: 490 TDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSL--------KSHSVDL 540 RRT E+ + +L+ + +IE+ + + +SN+G+I+ L K + Sbjct: 480 -----RRT---ELMIGEVLSLEDEDLIEETDVLITLSNKGYIKRLDQAEFTAQKRGGRGV 531 Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLLSGRG 585 K+ D ++ + T D +L + G+ Y LP NLL Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPIVNLLK-LD 590 Query: 586 HGEAIQLLIDLNHNQDIVTAFVYDSTCKLLV 616 GE+IQ +I++ ++ A+++ +T K LV Sbjct: 591 EGESIQTIINVEQDRSD-EAYLFFTTRKGLV 620 >gi|298208790|ref|YP_003716969.1| DNA gyrase A subunit [Croceibacter atlanticus HTCC2559] gi|83848717|gb|EAP86586.1| DNA gyrase A subunit [Croceibacter atlanticus HTCC2559] Length = 848 Score = 414 bits (1065), Expect = e-113, Method: Compositional matrix adjust. Identities = 225/609 (36%), Positives = 370/609 (60%), Gaps = 31/609 (5%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 E + ++++ ++ Y+ Y++S I RA+PD+RDG KPVHRR++ M E+G+ ++ KK Sbjct: 5 EKLISINIEDEMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLFGMHELGVRSNSSHKK 64 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 SARIVGEV+GK HPHGD SVYD++VR+AQ + RY L+ GQGNFG++DGDS AA RYTEA Sbjct: 65 SARIVGEVLGKYHPHGDTSVYDAMVRMAQEWSLRYMLVDGQGNFGSVDGDSPAAMRYTEA 124 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 +M ++A+ ++ +D+D VD +++ EP V P++ P LL NG SGIAVGMAT++P H Sbjct: 125 KMRKIADDMMADIDKDTVDHALNFDDTIEEPTVLPTRVPGLLINGASGIAVGMATNMPPH 184 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 N+ E+ + A ID+ +I +E L+E++ PDFPTGG I + + E+++ GRG +R Sbjct: 185 NLSEVVDGIHAYIDDSDIDVEGLMEHVKAPDFPTGGTIY-GYDGVREAFKTGRGRVVMRG 243 Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314 + EEV +G C+VVTEIPYQV K+ +I+K A+L+ K+I + IRDES + +++ Sbjct: 244 KAVFEEV-QGRECLVVTEIPYQVNKADMIKKTADLVNEKKIEGISAIRDESDRNGMRIVY 302 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 R P++++ +++ + +++ F +N L GR P+++ L ++ ++ HR EV+ R Sbjct: 303 ILKRDAIPNIVLNTLYKYTALQSSFSVNNIALVNGR-PEMLNLKDMIHHFVEHRHEVVVR 361 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAI 431 R+ + ++ + R IL+GL+IA NIDE+IA+IR N D+ + ++ RF LTE Q AI Sbjct: 362 RTKYELRKAEERAHILEGLIIASDNIDEVIALIRASSNADEAREKLMERFKLTEIQAKAI 421 Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491 + +RLR L LE+ +++SE D+L+ E + +L+ +++ I E++E+K+ + Sbjct: 422 VEMRLRQLTGLEQDKLRSEYDDLMKTIEDLKDILDKKERRMQIIKDELQEIKDKY----- 476 Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSAL 543 G R + E + D + + MI E + + IS+ G+I ++ V A Sbjct: 477 -GDERRSVIEYAGGDMSI--EDMIPNEKVVITISHAGYIKRTPLTEYKTQNRGGVGQKAS 533 Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKA-----YTLPAGNLLSGRGHGEAIQLLIDLNH 598 + D L+ ++ + G+ + +P G+ S G AIQ LI++ Sbjct: 534 TTRNEDFLEDMFVGTNHQYMIFFTQKGRCFWMRVFEIPEGSKTS---KGRAIQNLINIEP 590 Query: 599 NQDIVTAFV 607 + D V AF+ Sbjct: 591 D-DKVKAFI 598 >gi|117924379|ref|YP_864996.1| DNA gyrase subunit A [Magnetococcus sp. MC-1] gi|117608135|gb|ABK43590.1| DNA gyrase subunit A [Magnetococcus sp. MC-1] Length = 915 Score = 414 bits (1065), Expect = e-113, Method: Compositional matrix adjust. Identities = 245/626 (39%), Positives = 355/626 (56%), Gaps = 66/626 (10%) Query: 26 LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85 ++ YL YA+S I RA+PD+RDG KPVHRR++ AM E+G ++ ++KKSAR+VG+VIGK Sbjct: 21 MQRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMRELGNEWNRSYKKSARVVGDVIGK 80 Query: 86 LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145 HPHGD +VYD++VR+AQ F R+ L+ GQGNFG++DGDSAAA RYTE RMT++A +L Sbjct: 81 YHPHGDSAVYDTIVRMAQDFSMRHLLVDGQGNFGSVDGDSAAAMRYTEVRMTRLASELLA 140 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 +D++ V F Y+ EP V P+K+PNLL NG+SGIAVGMAT+IP HN+ E+ +A A Sbjct: 141 DIDKETVAFGPNYDGSLKEPEVLPAKYPNLLVNGSSGIAVGMATNIPPHNLGEVIDATCA 200 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265 LID+PE+ L++YI GPDFPTGG I + IV Y GRG +RA+ +E G Sbjct: 201 LIDDPELDPRALMQYIPGPDFPTGGSI-HGQAGIVSGYETGRGSVIIRAKTVIETRKDGK 259 Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325 I+V E+PYQV K++L+E+IAEL+ K++ + D+RDES + V+ R D++ Sbjct: 260 ETILVHELPYQVNKAKLVERIAELVREKKVTGISDLRDESDREGMRVVIEIKRDHQADVV 319 Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385 + +F + M++ F +N L GR P + L L +L HRREV+ RR+ F + Sbjct: 320 LNQLFKHTAMQSSFGINALALVDGR-PVTLSLKAFLVAFLKHRREVVTRRTIFELNKAQA 378 Query: 386 RVEILKGLLIAYLNIDEIIAIIRN----------------EDKPKPVMVSR--------- 420 R IL+GL +A NID IIA+IR E P M++R Sbjct: 379 RAHILEGLAVALANIDRIIALIRAAKTSAEAKEGLMAERWERGPVEAMLARALGENDVRS 438 Query: 421 -------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWN 473 ++L+ +Q AIL++RL L LE +I E + +L E + +L S + Sbjct: 439 AQFVEGGYTLSADQAQAILDMRLHRLTGLETEKIHEEFEEILKEIAYLKGILASDGVLMD 498 Query: 474 QIACEIREVKEIFSKSTDLGRRRTTFCEV----SRADKATLQQAMIEKEPITVVISNRGW 529 I E+ E+KE ++ RRT E S AD +I +E + V +S+ G+ Sbjct: 499 VIRQELLEIKERYANP-----RRTLIVEAVGDFSIAD-------LIPEEEMVVTVSHGGY 546 Query: 530 IRSLKSHSVDL--------SALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLP 576 I+ S + SA K+ D ++ A T D I L + G K Y +P Sbjct: 547 IKRQPSLAYQAQRRGGKGKSATGVKDEDFVEQMFVASTHDTIFLFTDTGRVFKLKVYEIP 606 Query: 577 AGNLLSGRGHGEAIQLLIDLNHNQDI 602 +G+ LS G+AI L+ L + + Sbjct: 607 SGSRLS---RGKAIVNLLQLEEGEKV 629 >gi|162452727|ref|YP_001615094.1| DNA gyrase subunit A [Sorangium cellulosum 'So ce 56'] gi|161163309|emb|CAN94614.1| DNA gyrase subunit A [Sorangium cellulosum 'So ce 56'] Length = 800 Score = 414 bits (1064), Expect = e-113, Method: Compositional matrix adjust. Identities = 258/733 (35%), Positives = 405/733 (55%), Gaps = 51/733 (6%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM-SEMGLDFGAAFKKSARI 78 SL + RYL YALS I RA+PD+RDG KPV RRI++AM ++ L A ++KSA + Sbjct: 36 TSLADEAQRRYLNYALSVITSRALPDVRDGLKPVQRRILYAMLHDLHLGPDAKYRKSAAV 95 Query: 79 VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138 VG+V+GK HPHGD ++YD++VRLAQ FV R PLI+G GNFG++DGD+ AA RYTEA++ Sbjct: 96 VGDVMGKYHPHGDVAIYDAMVRLAQDFVMRAPLIAGHGNFGSVDGDAPAAMRYTEAKLRP 155 Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198 +A +L + + VDFR Y+ EP+V PS+FPNLL NG+ GIAVGMATSIP HN+ E Sbjct: 156 LALELLSELGQRTVDFRPNYDGTRFEPIVLPSRFPNLLVNGSQGIAVGMATSIPPHNLGE 215 Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258 + +A +ALI+N E++ +LL Y+ GPDFPTGG + +++ + Y G+G ++R W + Sbjct: 216 VIDACVALIENRELTTHRLLSYVKGPDFPTGGQLHATKKELEAVYTAGQGSLKLRGEWQL 275 Query: 259 EEVG--RGSWC-IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315 EE RG+ IV+T IPY +++ ++EKIAE+I++K++P L D+RDES +VRIV+ Sbjct: 276 EEGDGKRGAAPQIVITSIPYGIERKAIVEKIAEVILSKKLPTLVDVRDESTGEVRIVMEL 335 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVL-----SMGRVPQVMPLDGILKEWLAHRRE 370 K R D L+M ++ + + +N+ L + P+ + L IL ++L R Sbjct: 336 K-RGADAQLVMAYLYKQTPLAINVQVNLTCLVPTDNAEIAAPRRLGLHEILTKFLDFRYA 394 Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQ 427 + RR F + + RR+ IL+G + +DE+I IIR + ++ RF+L E Q Sbjct: 395 TVTRRLEFELGELRRRITILEGFEKIFDALDEVIRIIRKSEGKADAAEKLMKRFTLNEEQ 454 Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487 DAIL L+L L +LE ++ +L AE ++I+ LL S ++W + E+ E+K + Sbjct: 455 TDAILELKLYRLARLEILLVQKDLGEKRAEAKRIEGLLRSDAKRWGIVRDELVEIKGSYG 514 Query: 488 KSTDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546 + +RRT V D+ Q + I E V++S +GW++ ++ DL++ + Sbjct: 515 E-----KRRTKV--VGSIDEPEYQAEDFIVAEDANVILSAQGWVKRVREVK-DLASTRIR 566 Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606 EGDS+ A+ T + S G Y ++ G+G+ +Q L L + ++ Sbjct: 567 EGDSVLAAVAGSTRSTVAFFSNLGACYVCRIHDVPQSTGYGDPVQKLFKLADGERLIALM 626 Query: 607 VYDSTCK----------------LLVVSSKGNAFIVE-ESEIIANTRKGKTFLKVSSEEK 649 +D L ++ G F +TR G+ F K++ ++ Sbjct: 627 SFDPRALDVPAQTPDSAEPEPPFALAITRGGLGFRFSLRPHRDPSTRSGRRFAKLNEGDE 686 Query: 650 MKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDG----------GI 697 + V V G D V + L +++++ +S GKG + +G G Sbjct: 687 VLFVHAVDGADRVLCASSDAWALSVAVEELALLSGPGKGSVVMRVAEGERLVGAALALGP 746 Query: 698 SDVICFKICEGLT 710 SDVI + +G T Sbjct: 747 SDVITVETEKGKT 759 >gi|16802055|ref|NP_463540.1| DNA gyrase subunit A [Listeria monocytogenes EGD-e] gi|47097289|ref|ZP_00234847.1| DNA gyrase, A subunit [Listeria monocytogenes str. 1/2a F6854] gi|224498300|ref|ZP_03666649.1| DNA gyrase subunit A [Listeria monocytogenes Finland 1988] gi|224503070|ref|ZP_03671377.1| DNA gyrase subunit A [Listeria monocytogenes FSL R2-561] gi|254827431|ref|ZP_05232118.1| DNA gyrase subunit A [Listeria monocytogenes FSL N3-165] gi|254830701|ref|ZP_05235356.1| DNA gyrase subunit A [Listeria monocytogenes 10403S] gi|254899679|ref|ZP_05259603.1| DNA gyrase subunit A [Listeria monocytogenes J0161] gi|254913118|ref|ZP_05263130.1| DNA gyrase [Listeria monocytogenes J2818] gi|254937499|ref|ZP_05269196.1| DNA gyrase subunit A [Listeria monocytogenes F6900] gi|255025421|ref|ZP_05297407.1| DNA gyrase subunit A [Listeria monocytogenes FSL J2-003] gi|284803259|ref|YP_003415124.1| DNA gyrase subunit A [Listeria monocytogenes 08-5578] gi|284996400|ref|YP_003418168.1| DNA gyrase subunit A [Listeria monocytogenes 08-5923] gi|16409366|emb|CAC98222.1| DNA gyrase subunit A [Listeria monocytogenes EGD-e] gi|21328236|gb|AAM48483.1| DNA gyrase subunit A [Listeria monocytogenes] gi|47014334|gb|EAL05309.1| DNA gyrase, A subunit [Listeria monocytogenes str. 1/2a F6854] gi|258599809|gb|EEW13134.1| DNA gyrase subunit A [Listeria monocytogenes FSL N3-165] gi|258610101|gb|EEW22709.1| DNA gyrase subunit A [Listeria monocytogenes F6900] gi|284058821|gb|ADB69762.1| DNA gyrase subunit A [Listeria monocytogenes 08-5578] gi|284061867|gb|ADB72806.1| DNA gyrase subunit A [Listeria monocytogenes 08-5923] gi|293591120|gb|EFF99454.1| DNA gyrase [Listeria monocytogenes J2818] Length = 842 Score = 414 bits (1064), Expect = e-113, Method: Compositional matrix adjust. Identities = 227/571 (39%), Positives = 355/571 (62%), Gaps = 22/571 (3%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 + + ++L + +L YA+S I RA+PD+RDG KPVHRRI++AM+++G+ A+KK Sbjct: 7 QRITEINLNKEMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYAMNDLGMTSDKAYKK 66 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 SARIVGEVIGK HPHGD +VY ++VR+AQ F R L+ G GNFG++DGD AAA RYTEA Sbjct: 67 SARIVGEVIGKYHPHGDTAVYFTMVRMAQDFSYRNMLVDGHGNFGSVDGDMAAAMRYTEA 126 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 RM++++ +L+ +++D +D+ D Y+ + EPV+ P++FPNLL NG+SGIAVGMAT+IP+H Sbjct: 127 RMSKISMELLRDINKDTIDYADNYDGSEREPVILPARFPNLLVNGSSGIAVGMATNIPTH 186 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 ++ E+ + LAL +PEI+I L+EYI GPDFPT G+I+ R I +Y GRG VR Sbjct: 187 HLGEVIDGVLALSHDPEITIRDLMEYIPGPDFPTAGMIM-GRSGIRRAYESGRGSITVRG 245 Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314 R +EE G IV+TEIPYQV K+RL+E+IAEL K+I + + DES ++ Sbjct: 246 RVDIEEKKNGKETIVITEIPYQVNKARLVERIAELAREKKIDGITSLNDESDRSGMRIVI 305 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 R + +++ ++F ++ ++T F +NM L + P+V+ L IL +L H++ V+ R Sbjct: 306 EVRRDISASVIVNNLFKMTALQTTFGINMLAL-VDNHPKVLNLKEILYYYLEHQKVVIRR 364 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAI 431 R+ F ++ + R IL+GL IA NID II +IR D K ++++F+L++ Q AI Sbjct: 365 RTEFELRKAEARAHILEGLRIALDNIDAIIKLIRGSKTSDVAKEGLMTQFNLSDKQAQAI 424 Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491 L++RL+ L LE +I+ E NL+A + ++L ++ I E+ E+K ++ Sbjct: 425 LDMRLQRLTGLEREKIEEEYQNLVALINDLKAILADDERILEIIREELEEIKVKYAD--- 481 Query: 492 LGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWI--------RSLKSHSVDLSA 542 +RRT E+ D +L+ + +I +E + + ++ RG+I RS + + Sbjct: 482 --KRRT---EILAGDLVSLEDEDLIPEEEVAITLTKRGYIKRLPLSTYRSQRRGGRGIQG 536 Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573 + E D ++ + T D +L + GK Y Sbjct: 537 MSTHEDDFVEHLVATSTHDTLLFFTNTGKVY 567 >gi|328956388|ref|YP_004373774.1| DNA gyrase, subunit A [Carnobacterium sp. 17-4] gi|328672712|gb|AEB28758.1| DNA gyrase, subunit A [Carnobacterium sp. 17-4] Length = 859 Score = 414 bits (1064), Expect = e-113, Method: Compositional matrix adjust. Identities = 232/609 (38%), Positives = 358/609 (58%), Gaps = 36/609 (5%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 +EN+K + L + +L YA+S I RA+PD+RDG KPVHRRI++ MSE+G+ A K Sbjct: 6 KENIKGIELSHEMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYGMSELGVTPDKAHK 65 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSARIVG+V+GK HPHGD ++Y+S+VR+AQ + RYPL+ G GNFG++DGD AAA RYTE Sbjct: 66 KSARIVGDVMGKYHPHGDSAIYESMVRMAQNWSYRYPLVDGHGNFGSVDGDGAAAMRYTE 125 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 ARMT++A +L+ +++D +D+ D Y+ + EP V P++FPNLL NG +GIAVGMAT+IP Sbjct: 126 ARMTKMALEMLRDINKDTIDYHDNYDGSEREPDVLPARFPNLLVNGVTGIAVGMATNIPP 185 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E+ A L+ NP+ + L+E I GPDFPTGG+++ + I ++Y G+G VR Sbjct: 186 HNLTEVISALHILMKNPDATTADLMEAIPGPDFPTGGLVM-GKSGIRKAYETGKGSIMVR 244 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313 A+ +E + G I+V E+PY V K+RL+E+IA+L KRI + D+ DES D V+ Sbjct: 245 AKVEIEILKNGKERIIVHELPYMVNKARLVERIADLARDKRIEGITDLADESDRDGMRVV 304 Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373 R + +++ +++ L+ ++T F NM + G VP+V+ L IL+E+L H+ V+ Sbjct: 305 IDVRRDVSASVVLNNLYKLTSLQTSFGFNMLAIVNG-VPKVLSLKSILEEYLKHQEIVIR 363 Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDA 430 RR+++ + + R IL+GL IA +IDEII IIR D K ++ + L+E Q A Sbjct: 364 RRTAYDKRKAEARAHILEGLRIALDHIDEIIRIIRGSKTGDIAKTTLIETYGLSEKQSQA 423 Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490 IL++R+ L LE +I++E L+A + +L + ++ I E+ EV+E F + Sbjct: 424 ILDMRMVRLTGLERDKIEAEYTELMALIADMADILANPERVHTIIETELLEVQERFGDA- 482 Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD--------LSA 542 RRT E IT ++++G+I+ L S + Sbjct: 483 ----RRTELLVGEVLSLEDEDLIEEEDIVIT--LTSKGYIKRLPSSEFKSQRRGGRGVQG 536 Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAY---------------TLPAGNLLSGRGHG 587 + + D ++ + T D +L + +GK Y +P NLL G G Sbjct: 537 MGVHDDDFIETLVSCSTHDTLLFFTNNGKVYRSKGYEIPEYGRTAKGIPVINLL-GVDSG 595 Query: 588 EAIQLLIDL 596 E +Q +I++ Sbjct: 596 ETVQAVINV 604 >gi|149693009|emb|CAK55539.1| DNA gyrase subunit [Salmonella enterica subsp. enterica serovar Typhi] gi|149693015|emb|CAK55542.1| DNA gyrase subunit [Salmonella enterica subsp. enterica serovar Typhi] Length = 878 Score = 414 bits (1064), Expect = e-113, Method: Compositional matrix adjust. Identities = 276/747 (36%), Positives = 410/747 (54%), Gaps = 69/747 (9%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + V++ L+ YL YA+S I RA+PD+RDG KPVHRR+++AM+ +G D+ A+KKSA Sbjct: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD +VY ++VR+AQPF RY L+ GQGNFG+IDGDSAAA RYTE R+ Sbjct: 68 RVVGDVIGKYHPHGDFAVYGTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 ++A ++ ++++ VDF D Y+ + P V P+K PNLL NG+SGIAVGMAT+IP HN+ Sbjct: 128 AKIAHGLMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ LA IDN +ISIE L+E+I GPDFPT II R I E+YR GRG +RAR Sbjct: 188 TEVINGCLAYIDNEDISIEGLMEHIPGPDFPTAAII-NGRRGIEEAYRTGRGKVYIRARA 246 Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314 VE + G I+V EIPYQV K+RLIEKIAEL+ KR+ + +RDES +D +RIV+ Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKDGMRIVIE 306 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K ++ ++++ +++ + ++ F +NM L G+ P++M L I+ ++ HRREV+ R Sbjct: 307 VKRDAVG-EVVLNNLYSQTQLQVSFGINMVALHHGQ-PKIMNLKDIISAFVRHRREVVTR 364 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----------- 420 R+ F ++ R IL+ L IA NID II +IR P K ++SR Sbjct: 365 RTIFELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAALISRPWDLGNVAAML 424 Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457 + LTE Q AIL+LRL+ L LE ++ E LL + Sbjct: 425 ERAGDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQ 484 Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517 ++ +L S + I E+ +++ F G R T + AD + +I + Sbjct: 485 IAELLHILGSADRLMEVIREEMELIRDQF------GDERRTEITANSADINI--EDLISQ 536 Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569 E + V +S++G+++ + + SA KE D + L A+T D IL S+ Sbjct: 537 ENVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSR 596 Query: 570 GKAYTLPAGNLL-SGRG-HGEAIQLLIDLNHNQDIVTAFV----YDSTCKLLVVSSKGNA 623 G+ Y + L + RG G I L+ L N+ I TA + Y+ + + ++ G Sbjct: 597 GRLYWMKVYQLPEASRGARGRPIVNLLPLEANERI-TAILPVREYEEGVNVFMATASGTV 655 Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMS 682 +E G + ++ +++ V +G D V + K++ F D + M Sbjct: 656 KKTALTEFSRPRSAGIIAVNLNDGDELIGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAMG 715 Query: 683 R-GKGVRLQSYKDGGISDVICFKICEG 708 R GVR K G V+ I G Sbjct: 716 RTATGVR--GIKLAGDDKVVSLIIPRG 740 >gi|306843965|ref|ZP_07476560.1| DNA gyrase, A subunit [Brucella sp. BO1] gi|306275720|gb|EFM57444.1| DNA gyrase, A subunit [Brucella sp. BO1] Length = 934 Score = 414 bits (1064), Expect = e-113, Method: Compositional matrix adjust. Identities = 256/694 (36%), Positives = 383/694 (55%), Gaps = 61/694 (8%) Query: 2 GVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61 G D+++ ++ +S+ ++ YL YA+S I RA+PD+RDG KPVHRRI+HAM Sbjct: 9 GSDDMNGGPNGGPSGIEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAM 68 Query: 62 SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121 +EM L + ++KSA +VGEV+GK HPHGD S+YD+LVR+AQ F R PLI GQGNFG+I Sbjct: 69 NEMNLAYNRPYRKSAGVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLIDGQGNFGSI 128 Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181 DGD AA RYTE R+ +V E +L +D+D V+F+D Y+ + EPVV P++FPNLL NG+ Sbjct: 129 DGDPPAAMRYTECRLEKVTESLLSDIDKDTVNFQDNYDGREQEPVVLPARFPNLLVNGSG 188 Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241 GIAVGMAT+IP HN+ E+ + +ALIDNP I + +L+E I GPDFPTGGII+ R I Sbjct: 189 GIAVGMATNIPPHNLGEVIDGCVALIDNPAIELSELMELIPGPDFPTGGIIL-GRNGINS 247 Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301 +Y GRG +R R +E + I++TEI YQV K+ +IEK+AEL+ KRI + D+ Sbjct: 248 AYTTGRGSVIMRGRATIEPMRGDREAIIITEISYQVNKASMIEKMAELVRDKRIDGISDL 307 Query: 302 RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361 RDES + V+ R D+++ ++ + ++T F NM L+ G+ Q+ LD +L Sbjct: 308 RDESDREGYRVVVELKRDAVADVVLNQLYRYTPLQTSFGCNMVALNGGKPEQLTLLD-ML 366 Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP----KPVM 417 + ++A R EV+ RR+ F + R +L GL IA NIDE+IA+IR P + +M Sbjct: 367 RAFVAFREEVVTRRTKFLLNKARDRAHVLVGLAIAVANIDEVIALIRRAPDPATAREQLM 426 Query: 418 VSR-------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELD 452 R ++L+E Q AIL+LRL+ L L ++ EL+ Sbjct: 427 ERRWPAVDVAPLIRLIDDPRHTLNEDNTYNLSEEQARAILDLRLQRLTALGRDEVADELN 486 Query: 453 NLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ 512 + E +L S + N + E+ V++ F+ RRT E+ + Sbjct: 487 KIGEEIRDYLDILGSRLRVMNIVKEEMIAVRDEFATP-----RRT---EIGFGGAEMDDE 538 Query: 513 AMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRIL 564 +I +E + V +S+ G+I R+ + S + KE D + A+T +L Sbjct: 539 DLIAREDMVVTVSHAGYIKRVPLTTYRAQRRGGKGRSGMATKEEDFVTRLFVANTHTPVL 598 Query: 565 LLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY----DSTCKLL 615 S+ G K + LP G S G+A+ ++ L + I T DS L Sbjct: 599 FFSSRGIVYKEKVWRLPVGTPQS---RGKALINMLPLQQGERITTIMPLPEDEDSWANLD 655 Query: 616 VV--SSKGNAFIVEESEIIANTRKGKTFLKVSSE 647 V+ +++G + S+ + R GK +K+ E Sbjct: 656 VMFSTTRGTVRRNKLSDFVQVNRNGKIAMKLEDE 689 >gi|118574934|gb|ABL07044.1| DNA gyrase subunit A [Arcobacter skirrowii] Length = 857 Score = 414 bits (1064), Expect = e-113, Method: Compositional matrix adjust. Identities = 242/615 (39%), Positives = 373/615 (60%), Gaps = 40/615 (6%) Query: 10 NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69 N +++ +++ +++ YL Y++S I RA+PD +DG KPVHRRI++AM ++ L Sbjct: 3 NLFENQDIIDINIEDSVKTSYLDYSMSVIIGRALPDAKDGLKPVHRRILYAMHDLNLTSK 62 Query: 70 AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129 A+KKSARIVG+VIGK HPHGD SVYD+LVR+AQ F R PL+ GQGNFG++DGDSAAA Sbjct: 63 VAYKKSARIVGDVIGKYHPHGDTSVYDALVRMAQNFSMRAPLVDGQGNFGSVDGDSAAAM 122 Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189 RYTEARMT++AE +L+ +D+D V+F Y++ EP V P++ P LL NG+ GIAVGMAT Sbjct: 123 RYTEARMTRIAEEVLRDLDKDTVNFVPNYDDTMREPAVLPTRVPTLLLNGSEGIAVGMAT 182 Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249 IP HN+ E+ +A L LIDNP L+E+I GPDFPTGG I R I+++Y GRG Sbjct: 183 KIPPHNLGELLDAILHLIDNPTAEAIDLMEFIQGPDFPTGGTIF-GRRGIIDAYTTGRGR 241 Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-ED 308 ++RA+ +E + IV+ E+PYQV K+RLIE+IA+L K+I + ++RDES E Sbjct: 242 VKIRAKHHIESKSKKD-VIVIDELPYQVNKARLIEQIADLAKDKQIEGISEVRDESDREG 300 Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368 +R+V+ K ++ ++++ +++ + MET F + + + + P+V L IL +L+HR Sbjct: 301 IRVVIELKKDAM-AEIVLNNLYKSTPMETTFGIIL-LAVYNKEPKVFNLPEILNIFLSHR 358 Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTE 425 + V+ RR+ F ++ R IL+GL IA NIDE++ IIR N+ + K + SRF L+ Sbjct: 359 KTVIIRRTIFDLEKAKARAHILEGLKIAVDNIDEVVRIIRASANDQEAKDNLSSRFGLSA 418 Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485 Q AIL++RL L L+ ++++E L+ ++++ +L S + I E+ E+KE Sbjct: 419 IQAQAILDMRLGRLTGLQRDKLEAEYQELMILIDQLELILRSEDRLNEIIKEELNEIKEK 478 Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545 FS RRT E+ + + +I EP+ V I++ G+++ + S + Sbjct: 479 FSNP-----RRT---EIEDSYDEIDVEDLIPNEPMVVTITHNGYVKRVPIKSYERQ---- 526 Query: 546 KEGDSLKIALHAH------------TTDRILLLSTDG-----KAYTLPAGNLLSGRGHGE 588 K G K+A+ H T D ++ ++ G K Y +P G S G+ Sbjct: 527 KRGGKGKVAVTTHDDDFIERFFVSNTHDTLMFVTNMGQLYWLKVYRIPEG---SRTAKGK 583 Query: 589 AIQLLIDLNHNQDIV 603 A+ LI+L ++ I+ Sbjct: 584 AVVNLINLRADEKIM 598 >gi|194332984|ref|YP_002014844.1| DNA gyrase subunit A [Prosthecochloris aestuarii DSM 271] gi|194310802|gb|ACF45197.1| DNA gyrase, A subunit [Prosthecochloris aestuarii DSM 271] Length = 826 Score = 414 bits (1064), Expect = e-113, Method: Compositional matrix adjust. Identities = 242/636 (38%), Positives = 371/636 (58%), Gaps = 38/636 (5%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 + + +S+ + YL Y++S I RA+PD+RDG KPVHRR+++ M E+GL G +KK Sbjct: 4 DKILPISIEEEMRGAYLDYSMSVIVSRALPDVRDGLKPVHRRVLYGMHELGLQAGKPYKK 63 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 SARIVGEV+GK HPHGD +VYDSLVR+ Q F RYPLI GQGNFG+IDGDS AA RYTE Sbjct: 64 SARIVGEVLGKFHPHGDSAVYDSLVRMVQDFSLRYPLIDGQGNFGSIDGDSPAAMRYTEV 123 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 RM +A +L+ +D++ VDF +++ EP V PS PN+L NG SGIAVGMAT+IP Sbjct: 124 RMKSIAGEMLKDLDKETVDFSLNFDDSLEEPRVLPSAMPNMLVNGASGIAVGMATNIPPQ 183 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 N+ E+ +A+I+NPEI++++++E+II PDFPTGGII E + ++YR GRG +RA Sbjct: 184 NLNEVVGGLIAMIENPEITVDEIMEHIIAPDFPTGGIIY-GYEGVKQAYRTGRGKVVIRA 242 Query: 255 RWCVEEVGR-GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313 R VE + G IVVTE+PYQV K RLIEKI +L+ K+I + DIRDES D ++ Sbjct: 243 RAVVEVTQKNGRESIVVTELPYQVNKVRLIEKIVDLVHQKKIEGIADIRDESDRDGMRLV 302 Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373 R +++ ++ + M+ F + + L G VP+V+ + +++ ++ HR E++ Sbjct: 303 IELKRDAVAKVVLNHLYKHTPMQDTFGVILLALVDG-VPKVLTIKEMMEAYILHRNEIVL 361 Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDA 430 RR+ + + A +++ IL+GL I N+DE+I+ IR N + ++ RF+LTE Q A Sbjct: 362 RRTRYDLSAAEKKAHILEGLKICLDNLDEVISTIRQSPNASVAQERLMERFALTEVQSKA 421 Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490 IL +RL+ L +E +I ++ LA E++ +L + ++Q I E+ VK +F Sbjct: 422 ILEMRLQRLTGMERSKIDNDYKETLAHIEELRFILANPERQMEIIKEELLRVKAVFGDE- 480 Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DLSA 542 RRT E+ + + MI +E + + +++ G+I+ ++ Sbjct: 481 ----RRT---EIVPQEGEFSIEDMIAQEDVVITVTHDGFIKRFPVSGYRRQARGGKGVTG 533 Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLP-AGNLLSGRG--------HGE 588 K D ++ A T + IL ++ G K Y +P AG GR GE Sbjct: 534 AQAKLDDFVEHMFIASTHNYILFFTSMGRCHWLKVYEIPEAGRTARGRSLANIMELQKGE 593 Query: 589 AIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAF 624 I+ I++ D + F+ +T + L+ ++ AF Sbjct: 594 TIRAYINVKTFDDPL--FIVMATARGLIKKTEIEAF 627 >gi|71083677|ref|YP_266397.1| DNA gyrase subunit A [Candidatus Pelagibacter ubique HTCC1062] gi|71062790|gb|AAZ21793.1| DNA gyrase subunit A [Candidatus Pelagibacter ubique HTCC1062] Length = 849 Score = 414 bits (1064), Expect = e-113, Method: Compositional matrix adjust. Identities = 234/628 (37%), Positives = 374/628 (59%), Gaps = 53/628 (8%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 ++N+K +S+ + YL+YA+S I RA+PD+RDG KPVHRRI+ AM + G D+ F+ Sbjct: 9 DKNIKLISMHDEMSSSYLSYAMSVIVSRALPDVRDGLKPVHRRILFAMYKGGYDWSKQFR 68 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSARIVG+VIGK HPHGDQSVYD+LVR+ Q F PL+ GQGNFG+IDGD AAA RYTE Sbjct: 69 KSARIVGDVIGKYHPHGDQSVYDALVRMVQDFSMSLPLVQGQGNFGSIDGDPAAAMRYTE 128 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 R+ +V++ ++ +++D ++++ Y+E + EP V P+++PNLL NG GIAVGMATSIP Sbjct: 129 TRLAKVSQYLIDDIEKDTIEYKSNYDETEKEPSVLPAQYPNLLVNGAGGIAVGMATSIPP 188 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ EI + LALI+N +I I++L+++I GPDFPTGG+I+ +E I Y +GRG F++R Sbjct: 189 HNLGEIIDGTLALIENKDIKIKELMKHIPGPDFPTGGVII-GKEIIKAGYNVGRGSFKIR 247 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312 VE G +V+T +PYQV KS L E+IA+L+ K+I ++DIRDES E +R+ Sbjct: 248 GEISVEAQKNGRERLVITSVPYQVNKSVLNERIAQLVREKKIEGIKDIRDESNREGIRVA 307 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 + +N ++P+ + ++ + +E+ F N + G+ P++ L L +L R +V+ Sbjct: 308 IDLRN-GVEPETIKRLLYKNTSIESSFGFNTLAIVDGK-PKICNLKEFLTNFLTFREDVV 365 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP----KPVMVSR-------- 420 +++ F ++ + R IL GL ++ N+D+II IIR+ P K ++ ++ Sbjct: 366 IKKTKFDLKKAEDRAHILIGLSVSVENLDKIIKIIRSSKTPDDAKKSLLNTKWKINKSLK 425 Query: 421 -------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467 +SL++ QV AIL LRL+ L L +I+ E+ L + ++NS Sbjct: 426 LISLVEDKKEKNLYSLSDPQVIAILELRLQKLTALGINEIEVEIKKLADLIKGYKKIINS 485 Query: 468 GKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNR 527 K+ N I+ E++ +KE F+ + RR + D + I+KE + + ++ + Sbjct: 486 KKELLNVISEELKTIKEKFA----VPRRTKIIDAILNYD----IEETIQKESVIITVTLQ 537 Query: 528 GWIRSLKSHSVDL--------SALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYT 574 G+I+ SV S + ++ DS+ L +T +L ST+G KA+ Sbjct: 538 GYIKRGALSSVKQQKRGGKGKSGITTRDEDSVVQTLSVNTHTSVLFFSTEGLVYKIKAWK 597 Query: 575 LPAGNLLSGRGHGEAIQLLIDLNHNQDI 602 +P G+ S G+++ ++ L ++Q I Sbjct: 598 IPEGSTTS---KGKSLFNILPLKNHQSI 622 >gi|254293784|ref|YP_003059807.1| DNA gyrase subunit alpha [Hirschia baltica ATCC 49814] gi|254042315|gb|ACT59110.1| DNA gyrase, A subunit [Hirschia baltica ATCC 49814] Length = 981 Score = 414 bits (1064), Expect = e-113, Method: Compositional matrix adjust. Identities = 258/701 (36%), Positives = 381/701 (54%), Gaps = 70/701 (9%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 E+ V +++ +++ YL YA+S I RA+PD+RDG KPVHRRI+ +MSE G F A+K Sbjct: 40 EDGVSPINISDEMKKSYLDYAMSVIVSRALPDVRDGLKPVHRRILFSMSEQGYTFDKAYK 99 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSAR+VG+VIGK HPHGDQSVYD+LVR+AQ F PL+ GQGNFG++DGD AAA RYTE Sbjct: 100 KSARVVGDVIGKYHPHGDQSVYDALVRMAQNFSMGLPLLDGQGNFGSMDGDPAAAMRYTE 159 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 ++ +VA +L +D+D V+F++ Y+ + EP+V P++FPNLL NG GIAVGMAT+IP Sbjct: 160 VKLKKVANHLLADIDKDTVNFQENYDGSEKEPIVLPARFPNLLVNGGGGIAVGMATNIPP 219 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E+ +A +A+I++P I E LLE + GPDFPTG +I+ R GRG +R Sbjct: 220 HNLGEVIDATIAMIEDPNIDDEALLEIVPGPDFPTGALII-GRAGSRSGLMTGRGSVIMR 278 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIV 312 ++ +EE+ G +V TEIPYQV K+ +IEKIAEL+ KRI + D+RDES D VR+V Sbjct: 279 SKSSIEELKNGREALVFTEIPYQVNKASMIEKIAELVRDKRIEGIADMRDESDRDGVRVV 338 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 + K R P++++ +F + ++T F +NM L+ GR P+++ L IL+ ++ R EV+ Sbjct: 339 VEVK-RDASPEVVLNQLFRYTQLQTSFGMNMLALNSGR-PELLSLKAILQAFIIFREEVV 396 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM--------------- 417 RR+ F + R +L GL +A NIDE+I IIR+ P Sbjct: 397 ARRTKFELNKARARAHLLVGLALAVANIDEVIKIIRHSPDPSTAREKLMDRAWPAQDMLS 456 Query: 418 --------------VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDS 463 V L+E Q AIL+LRL+ L L +I E L Sbjct: 457 LINLIADRRTVANEVGEIRLSEEQARAILDLRLQRLTGLGRDEIGDEARGLADRIADYLD 516 Query: 464 LLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVV 523 +L+S + I E+R V+E F+ RR+ F E A+ +A IEKE + V+ Sbjct: 517 ILSSRPRVMEIITEELRVVREEFAIP-----RRSQFIE---AELDMDDEAFIEKEDMVVM 568 Query: 524 ISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG----- 570 ++ G+ R+ S + KE D++ A+T +L S+ G Sbjct: 569 FTHGGYAKRTALSIYRTQHRGGRGRSGMGTKEEDAVTRFFVANTHTEVLFFSSTGMVYKT 628 Query: 571 KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD------STCKLLVVSSKGNAF 624 K + +P G S G+A+ L+ L+ + I + + +L + G Sbjct: 629 KVWRMPLGTPQS---RGKALVNLLPLDKGETITSVMPLPEDEEERANMNILFATRSGGVR 685 Query: 625 IVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVG 665 + S+ R GK +K+ +V G +VG Sbjct: 686 RNKLSDFTQVNRNGKIAMKLDE-------AQVAGSDDGIVG 719 >gi|301022397|ref|ZP_07186281.1| DNA gyrase, A subunit [Escherichia coli MS 69-1] gi|300397547|gb|EFJ81085.1| DNA gyrase, A subunit [Escherichia coli MS 69-1] Length = 875 Score = 414 bits (1064), Expect = e-113, Method: Compositional matrix adjust. Identities = 255/659 (38%), Positives = 381/659 (57%), Gaps = 65/659 (9%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + V++ L+ YL YA+S I RA+PD+RDG KPVHRR+++AM+ +G D+ A+KKSA Sbjct: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD +VY+++VR+AQPF RY L+ GQGNFG+IDGDSAAA RYTE R+ Sbjct: 68 RVVGDVIGKYHPHGDLAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 ++A ++ ++++ VDF D Y+ + P V P+K PNLL NG+SGIAVGMAT+IP HN+ Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ LA ID+ +ISIE L+E+I GPDFPT II R I E+YR GRG +RAR Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAII-NGRRGIEEAYRTGRGKVYIRARA 246 Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314 VE + G I+V EIPYQV K+RLIEKIAEL+ KR+ + +RDES +D +RIV+ Sbjct: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K ++ ++++ +++ + ++ F +NM L G+ P++M L I+ ++ HRREV+ R Sbjct: 307 VKRDAVG-EVVLNNLYSQTQLQVSFGINMVALHHGQ-PKIMNLKDIIAAFVRHRREVVTR 364 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----------- 420 R+ F ++ R IL+ L +A NID II +IR+ P K +V+ Sbjct: 365 RTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAML 424 Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457 + LTE Q AIL+LRL+ L LE ++ E LL + Sbjct: 425 ERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQ 484 Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517 ++ +L S + I E+ V+E F G +R T + AD + +I + Sbjct: 485 IAELLRILGSADRLMEVIREELELVREQF------GDKRRTEITANSADINL--EDLITQ 536 Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569 E + V +S++G+++ + + SA KE D + L A+T D IL S+ Sbjct: 537 EDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSR 596 Query: 570 GKAYTLPAGNLLSG-RG-HGEAIQLLIDLNHNQDIVTAFV----YDSTCKLLVVSSKGN 622 G+ Y++ L RG G I L+ L ++ I TA + ++ K+ + ++ G Sbjct: 597 GRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERI-TAILPVTEFEEGVKVFMATANGT 654 >gi|187934554|ref|YP_001884272.1| DNA gyrase subunit A [Clostridium botulinum B str. Eklund 17B] gi|187722707|gb|ACD23928.1| DNA gyrase, A subunit [Clostridium botulinum B str. Eklund 17B] Length = 849 Score = 414 bits (1064), Expect = e-113, Method: Compositional matrix adjust. Identities = 275/776 (35%), Positives = 429/776 (55%), Gaps = 66/776 (8%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 E + +V ++ +++ Y+ YA+S I RA+PD+RDG KPVHRRI+++M +GL ++ Sbjct: 5 EGKIISVDIKNEMKKCYIDYAMSVIVGRALPDVRDGLKPVHRRILYSMQILGLSPEKGYR 64 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 K ARIVG+V+GK HPHGD SVYD+LVR+AQ F RY L+ G GNFG++DGD AAA RYTE Sbjct: 65 KCARIVGDVLGKYHPHGDTSVYDALVRMAQDFSMRYMLVDGHGNFGSVDGDGAAAMRYTE 124 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 A+M ++A +L+ ++++ VDF ++ E+ EP V PS+FPNLL NG+SGIAVGMAT+IP Sbjct: 125 AKMNKIAVEMLRDINKNTVDFMPNFDGEEEEPTVLPSRFPNLLVNGSSGIAVGMATNIPP 184 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E+ + + LIDNPE S+ +L+ I GPDFPTG I+ I +Y GRG +R Sbjct: 185 HNLGEVIDGTIMLIDNPESSVLELMTKIKGPDFPTGATIM-GHAGIRSAYETGRGKIVIR 243 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIV 312 A+ +EE G I+ TEIPYQV K+RLIE IAEL+ K+I + D+RDES D +RIV Sbjct: 244 AKSNIEE-ENGRHKIIFTEIPYQVNKARLIENIAELVKDKKITGISDLRDESDRDGMRIV 302 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 + K + +P++++ ++ + ++ F + M L + +V+ L +L ++ ++EV+ Sbjct: 303 IELK-KDANPNIILNLLYKHTKLQDSFGVIMLAL-VNNETKVLNLKEVLVHYVDFQKEVI 360 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVD 429 RR++F + + R IL+GL IA NID +I+IIRN K ++ F+L+E Q Sbjct: 361 TRRTTFELNKAEARAHILEGLKIALDNIDRVISIIRNSSTSEIAKNTLMDEFALSEKQSQ 420 Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489 AIL ++LR L LE +I E + LL + E + S+L S ++ I E+ E+K + Sbjct: 421 AILEMKLRRLTGLERDKIDDEYNELLKQMEYLRSILASEEKLLEVIKNELLEIKAKYGDE 480 Query: 490 TDLGRRRTT----FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD------ 539 RRT+ E++ D +I++E + + ++ G+I+ + + Sbjct: 481 -----RRTSIEQDMNEINIED-------LIQEEDVVITLTKSGYIKRISADVYSAQRRGG 528 Query: 540 --LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEAIQLLID 595 + A+ KE D + + T +L + G+ Y L A + +GR G I LI Sbjct: 529 RGIQAMSTKEDDFVDHVMITSTHSDVLFFTNRGRVYKLRAYEIPDAGRQAKGTNIINLIA 588 Query: 596 LNHNQDIVT----------AFVYDSTCKLLVVSSKGNAF--IVEESEIIANTRKGKTFLK 643 + ++ I T +++ T + +V + N F + + I N R+ LK Sbjct: 589 IEPDEKIQTVLTVTDKRRDGYLFMGTKQGIVKKTHLNEFRNLRKNGLIAINLRENDELLK 648 Query: 644 VSSEEKMKLVVKVT-GD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDV 700 VK+T GD +V V +N L F+ + M R GV+ + K I+ Sbjct: 649 ----------VKITYGDANVMFVTQNGYALRFNEKDVRHMGRTASGVKAITLKGDDIA-- 696 Query: 701 ICFKIC---EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753 +C I E L I G N+ + RGGVG + K ++GK + + Sbjct: 697 VCMDIAVDEEELLVISENGFGKRTPVNEY--KVQHRGGVGLITYKISEKTGKLVGA 750 >gi|91763282|ref|ZP_01265246.1| DNA gyrase subunit A [Candidatus Pelagibacter ubique HTCC1002] gi|91717695|gb|EAS84346.1| DNA gyrase subunit A [Candidatus Pelagibacter ubique HTCC1002] Length = 849 Score = 414 bits (1064), Expect = e-113, Method: Compositional matrix adjust. Identities = 234/628 (37%), Positives = 374/628 (59%), Gaps = 53/628 (8%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 ++N+K +S+ + YL+YA+S I RA+PD+RDG KPVHRRI+ AM + G D+ F+ Sbjct: 9 DKNIKLISMHDEMSSSYLSYAMSVIVSRALPDVRDGLKPVHRRILFAMYKGGYDWSKQFR 68 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSARIVG+VIGK HPHGDQSVYD+LVR+ Q F PL+ GQGNFG+IDGD AAA RYTE Sbjct: 69 KSARIVGDVIGKYHPHGDQSVYDALVRMVQDFSMSLPLVQGQGNFGSIDGDPAAAMRYTE 128 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 R+ +V++ ++ +++D ++++ Y+E + EP V P+++PNLL NG GIAVGMATSIP Sbjct: 129 TRLAKVSQYLIDDIEKDTIEYKSNYDETEKEPSVLPAQYPNLLVNGAGGIAVGMATSIPP 188 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ EI + LALI+N +I I++L+++I GPDFPTGG+I+ +E I Y +GRG F++R Sbjct: 189 HNLGEIIDGTLALIENKDIKIKELMKHIPGPDFPTGGVII-GKEIIKAGYNVGRGSFKIR 247 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312 VE G +V+T +PYQV KS L E+IA+L+ K+I ++DIRDES E +R+ Sbjct: 248 GEISVEAQKNGRERLVITSVPYQVNKSVLNERIAQLVREKKIEGIKDIRDESNREGIRVA 307 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 + +N ++P+ + ++ + +E+ F N + G+ P++ L L +L R +V+ Sbjct: 308 IDLRN-GVEPETIKRLLYKNTSIESSFGFNTLAIVDGK-PKICDLKEFLTNFLTFREDVV 365 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP----KPVMVSR-------- 420 +++ F ++ + R IL GL ++ N+D+II IIR+ P K ++ ++ Sbjct: 366 IKKTKFDLKKAEDRAHILIGLSVSVENLDKIIKIIRSSKTPDDAKKSLLNTKWKINKSLK 425 Query: 421 -------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467 +SL++ QV AIL LRL+ L L +I+ E+ L + ++NS Sbjct: 426 LISLVEDKKEKNLYSLSDPQVIAILELRLQKLTALGINEIEVEIKKLADLIKGYKKIINS 485 Query: 468 GKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNR 527 K+ N I+ E++ +KE F+ + RR + D + I+KE + + ++ + Sbjct: 486 KKELLNVISEELKTIKEKFA----VPRRTKIIDAILNYD----IEETIQKESVIITVTLQ 537 Query: 528 GWIRSLKSHSVDL--------SALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYT 574 G+I+ SV S + ++ DS+ L +T +L ST+G KA+ Sbjct: 538 GYIKRGALSSVKQQKRGGKGKSGITTRDEDSVVQTLSVNTHTSVLFFSTEGLVYKIKAWK 597 Query: 575 LPAGNLLSGRGHGEAIQLLIDLNHNQDI 602 +P G+ S G+++ ++ L ++Q I Sbjct: 598 IPEGSTTS---KGKSLFNILPLKNHQSI 622 >gi|71892249|ref|YP_277983.1| DNA gyrase, subunit A [Candidatus Blochmannia pennsylvanicus str. BPEN] gi|71796355|gb|AAZ41106.1| DNA gyrase, subunit A [Candidatus Blochmannia pennsylvanicus str. BPEN] Length = 843 Score = 414 bits (1064), Expect = e-113, Method: Compositional matrix adjust. Identities = 255/662 (38%), Positives = 386/662 (58%), Gaps = 73/662 (11%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + +++ L YL YA+S I RA+PD+RDG KPVHRRI+ AM +G + +KKSA Sbjct: 8 ITQINIEEELTHSYLDYAMSVIVGRALPDVRDGLKPVHRRILFAMQVLGNCWNRNYKKSA 67 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD +VY+++VR+AQPF+ RY L+ GQGNFG++DGD AAA RYTE RM Sbjct: 68 RVVGDVIGKYHPHGDTAVYETIVRMAQPFLMRYALVDGQGNFGSVDGDPAAAMRYTEVRM 127 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 +++A +L +D++ VD+ Y+ +S P + P++ PNLL NG+SGIAVGMAT+IP HN+ Sbjct: 128 SKIANELLLDLDKETVDYELNYDGTESIPGILPARIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ LA IDN +I+IE+L++YI GPDFPT II +S + E+Y GRG +RAR Sbjct: 188 SEVINGCLAFIDNEDITIEELMKYIPGPDFPTAAIINDS-GGLKEAYSTGRGKIYIRARS 246 Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314 +E +V G IV+ EIPYQV K+RL+EKIAEL KRI + ++RDES +D +RIV+ Sbjct: 247 EIETDVKSGRESIVIYEIPYQVNKARLLEKIAELAKLKRIEGIYNLRDESDKDGMRIVVE 306 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K R ++++ +++ L+ ++T F +NM L G+ P++M L IL ++ HRR V+ R Sbjct: 307 IK-RDAISEVILNNLYSLTSLQTSFGINMVALHQGQ-PKIMSLKDILSAFVCHRRAVVIR 364 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVS------------ 419 R +F ++ R+ IL+GL IA NID +I +IR + + V++S Sbjct: 365 RVTFELKKARSRIHILEGLAIALFNIDSVIKLIRQSNSSVEASSVLISSSWNIGNVFDMK 424 Query: 420 ----------------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457 ++ LT+NQ AIL+L+L L LE ++ E +LL + Sbjct: 425 QRTSINLMKSEGSEVKNAVHNNQYCLTKNQAQAILDLKLHKLTTLEYEKLLQEYSSLLEK 484 Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517 + + S+L K I E+ ++E ++ S RRT E+S + + +I + Sbjct: 485 IKNLISILKDPKCLMRVIRQELLMIQEEYNDS-----RRT---EISSNIENINVENLINQ 536 Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569 + + V +S +G+++ + K A KE D + L A+T D +LL S Sbjct: 537 KDVVVTLSYQGYVKYQPLTDYEAQKRGGKGKLATRIKEEDFITRLLIANTHDTVLLFSNY 596 Query: 570 G-----KAYTLPAGNLLSGRG-HGEAIQLLIDLNHNQDIVTAFV----YDSTCKLLVVSS 619 G K Y LPA + RG G+ I L+ L+ N+ I TA + Y + ++ + +S Sbjct: 597 GRIYWMKVYRLPA----ASRGSRGKPIINLLPLDVNERI-TAILPIQNYTTGHQVFMATS 651 Query: 620 KG 621 G Sbjct: 652 SG 653 >gi|83593079|ref|YP_426831.1| DNA gyrase subunit A [Rhodospirillum rubrum ATCC 11170] gi|83575993|gb|ABC22544.1| DNA gyrase subunit A [Rhodospirillum rubrum ATCC 11170] Length = 943 Score = 414 bits (1064), Expect = e-113, Method: Compositional matrix adjust. Identities = 236/642 (36%), Positives = 370/642 (57%), Gaps = 56/642 (8%) Query: 7 SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66 +N+ ++ ++ VS+ ++ YL YA+S I RA+PD+RDG KPVHRRI+++M E G Sbjct: 3 TNTPKPIDLDISPVSIEDEMKRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYSMKESGY 62 Query: 67 DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126 +F ++KSARIVG+V+GK HPHGDQS+YD++VR+ Q F R PLI GQGNFG++DGD A Sbjct: 63 EFNKPYRKSARIVGDVMGKYHPHGDQSIYDAMVRMVQNFAMRLPLIDGQGNFGSMDGDRA 122 Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186 AA RYTEARM + A +L +D++ VDF+ Y+E EP+V P++FPNLL NG GIAVG Sbjct: 123 AAMRYTEARMAKAAHSLLDDIDKETVDFQPNYDETTREPIVLPARFPNLLVNGAGGIAVG 182 Query: 187 MATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLG 246 MAT+IP HN+ E+ +A A+IDNP ++ E+LLE + GPDFPTGG I+ R + ++ G Sbjct: 183 MATNIPPHNLGEVIDACCAMIDNPAVTAEELLELVPGPDFPTGGTIL-GRSGVRAAHLTG 241 Query: 247 RGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES- 305 RG +R R E++ G I+VTE+PYQV K+ ++EKIAEL+ K++ + DIRDES Sbjct: 242 RGSVIMRGRTHFEDISGGRQAIIVTEVPYQVNKASMVEKIAELVREKKLEGISDIRDESD 301 Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365 VR+V+ K ++ ++++ +F + ++T F +NM L+ G+ P+++ L I++ ++ Sbjct: 302 RRGVRVVIEVKRDAM-AEVVLNQLFRYTPLQTSFGVNMLALNGGK-PELLALRPIIEAFI 359 Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSR-- 420 R EV+ RR+ F + R L GL IA N+D +I +IR P+ +++R Sbjct: 360 TFREEVIRRRTIFELGKARERAHTLVGLAIAVANLDPVIKLIREAPDPQAAREGLMARDW 419 Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457 + L+E Q AIL+LRL L LE ++ EL + + Sbjct: 420 PAMDVEPLIKLIDEPGRMVIDGVYRLSEIQARAILDLRLHRLTGLERDKLHGELIEIGQQ 479 Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517 E+ +L S + + + E+ E+KE ++ RRTT E + +I++ Sbjct: 480 IEEYLHILRSRARLFEIMRAELVEMKEAYATP-----RRTTLEENEFEHDI---EDLIQR 531 Query: 518 EPITVVISNRGWIRSLK--------SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569 E + V ++N G+I+ + + + ++ D + +T +L S+D Sbjct: 532 EEMVVTVTNTGYIKRVPLTTYRAQRRGGRGRAGMSMRDEDFVTTIFVVNTHAPLLFFSSD 591 Query: 570 G-----KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606 G K Y LP G + + G+A+ ++ LN + I T Sbjct: 592 GMVYKMKVYRLPLG---TPQARGKAMVNIMPLNEGERITTVM 630 >gi|320449577|ref|YP_004201673.1| DNA gyrase subunit A [Thermus scotoductus SA-01] gi|320149746|gb|ADW21124.1| DNA gyrase, subunit A [Thermus scotoductus SA-01] Length = 805 Score = 414 bits (1064), Expect = e-113, Method: Compositional matrix adjust. Identities = 234/603 (38%), Positives = 366/603 (60%), Gaps = 27/603 (4%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 V V + L++ ++ YA+S I +RA+PD+RDG KPV RRI+ + G+ G KS Sbjct: 3 QVLPVEITEELKQSFINYAMSVIVDRALPDVRDGLKPVQRRILFGAYQEGVLPGRKHVKS 62 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 A+IVGEV+GK HPHGD ++YD+L RLAQP+ RYPL+ GQGNFG++DGD AA RYTEAR Sbjct: 63 AKIVGEVMGKYHPHGDAAIYDALARLAQPWNLRYPLVDGQGNFGSLDGDPPAAQRYTEAR 122 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 ++ + +L +D++ VDFR Y+ EP V PS PNLL NG SGIAVGMATS+P HN Sbjct: 123 LSPLGAEMLLDIDKETVDFRPNYDGSLKEPEVLPSAIPNLLVNGASGIAVGMATSLPPHN 182 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 + E+ +A +A+IDNP I++E+++ Y+ GPDFPTGG + SR+ I E+Y GRG +VRA+ Sbjct: 183 LSEVVDALVAMIDNPGITLEEVMRYLPGPDFPTGGKL--SRKGIQEAYATGRGSLKVRAK 240 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLF 314 +EE G+ +VVTEIPYQV K+ LI +IA L+ AK+I + +RDES + +RI + Sbjct: 241 VRIEEKGQ-RPMLVVTEIPYQVNKAGLIAQIAALVKAKKIEDIVALRDESDRQGLRIAIE 299 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K R P +++ ++ + ++T F +N+ + G P+V+PL +++ +L HR+EV+ R Sbjct: 300 LK-RGASPQVVLNQLYKHTALQTSFTVNLLAIVNGE-PKVLPLLSLMRHYLDHRKEVVRR 357 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAI 431 RS F ++ + R +L+GLLIA +IDE+IA+IR + + + ++ RF L+E Q AI Sbjct: 358 RSLFDLKKAEERAHVLEGLLIALDHIDEVIALIRASQDASEARKGLMERFGLSEIQAQAI 417 Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491 L++RL+ L LE ++ E L+ E ++ ++L + W ++ ++ VKE + + Sbjct: 418 LDMRLQRLVALEREKLLEEYRELMEEIARLKAILEEEGRLWAEVKKDLLRVKEKYGDA-- 475 Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DLSAL 543 RRT E + + + +IE EP+ + ++ +G+++ L S L A Sbjct: 476 ---RRTVITEF---EDSFNPEDLIEDEPMVITLTAQGFLKRLPLESYRAQGRGGKGLIAG 529 Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQD 601 KE D A + +LL + G+ Y L L + + G ++ L+ L ++ Sbjct: 530 KTKEEDEAIQVFVAQAHEDLLLFTNRGRVYRLKVYELPEMGRQARGVHVKTLLPLAEEEE 589 Query: 602 IVT 604 + Sbjct: 590 VAA 592 >gi|312134089|ref|YP_004001427.1| DNA gyrase subunit A [Caldicellulosiruptor owensensis OL] gi|311774140|gb|ADQ03627.1| DNA gyrase, A subunit [Caldicellulosiruptor owensensis OL] Length = 809 Score = 414 bits (1064), Expect = e-113, Method: Compositional matrix adjust. Identities = 253/697 (36%), Positives = 409/697 (58%), Gaps = 34/697 (4%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 V ++ +++ Y+ YA+S I RA+PD+RDG KPVHRRI++AM+E+GL ++KSA +V Sbjct: 11 VEIQEEMKKSYIDYAMSVIVSRALPDVRDGLKPVHRRILYAMNEIGLTPDKPYRKSATVV 70 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G V+ K HPHGD +VY+SLVR+AQ F R+PL+ G GNFG++DGD AA RYTEARM+++ Sbjct: 71 GHVLAKYHPHGDAAVYESLVRMAQDFSMRHPLVDGHGNFGSVDGDPPAAMRYTEARMSKI 130 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A +L+ ++++ VDF ++E EP V PS+FPNLL NG+ GIAVGMAT+IP HN+ E+ Sbjct: 131 AIEMLRDIEKETVDFMPNFDESAKEPKVLPSRFPNLLVNGSQGIAVGMATNIPPHNLAEV 190 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 +A + ++DN +++ +++ I GPDFPTGG I+ ++ I ++Y G+G VRA+ +E Sbjct: 191 IDAIVYILDNENATLDDIMKIIKGPDFPTGGYII-GKKGIKDAYATGKGKIIVRAKTSIE 249 Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFPKNR 318 + +G I+VTE+PY V K+RLIEKIAEL+ K+I + DIRDES E +RIV+ K + Sbjct: 250 QTSKGRQRIIVTELPYMVNKARLIEKIAELVHEKKIDGISDIRDESDKEGLRIVIEIK-K 308 Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378 D +++++ ++ + ++ F + M L + P+V+ L +L ++ H++E++ RR+ + Sbjct: 309 DADANVVLKQLYKNTQLQDSFGIIMLAL-VDNQPKVLTLMDMLNLYIEHQKEIIVRRTRY 367 Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAILNLR 435 ++ + R IL+GL A +IDEII+IIR+ ++ K ++ RF T+ Q AIL++R Sbjct: 368 DLKKAEERAHILEGLKKALDHIDEIISIIRSSKTVNEAKDRLIQRFQFTDIQAQAILDMR 427 Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495 L+ L LE +I+ EL L+ E ++L S I EI E+KE + R Sbjct: 428 LQRLTGLERQKIEEELAELIKMIEYYKNVLASEAMVKEIIKKEILEIKEKYKDE-----R 482 Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSVDLSALHFKE 547 RT + D + ++ IT +++ G+I+ L K ++ + +E Sbjct: 483 RTKIIQDEHEDFEEEELIQEQETVIT--LTHFGYIKRLPLDTYKSQKRGGRGITGISTRE 540 Query: 548 GDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602 D ++ T IL + G +AY +P G S + G AI LI + ++ I Sbjct: 541 DDFVEDVFVTTTHHYILFFTDKGRVFRLRAYEVPEG---SRQAKGTAIVNLIQIGKDEKI 597 Query: 603 V-TAFVYD-STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-D 659 T V D L++ + G V SE TR GK + ++ ++ + V +G D Sbjct: 598 TATMAVKDFKEGYLMMCTKNGTIKKVLLSEFENTTRAGKKAITLADDDSLVDVKLTSGSD 657 Query: 660 HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDG 695 V +V N ++F+ + + M R +GV+ + +DG Sbjct: 658 EVVLVSSNGYCVVFNENDVRVMGRSAQGVKGMTLEDG 694 >gi|88810645|ref|ZP_01125902.1| DNA gyrase, A subunit [Nitrococcus mobilis Nb-231] gi|88792275|gb|EAR23385.1| DNA gyrase, A subunit [Nitrococcus mobilis Nb-231] Length = 852 Score = 414 bits (1064), Expect = e-113, Method: Compositional matrix adjust. Identities = 250/662 (37%), Positives = 381/662 (57%), Gaps = 62/662 (9%) Query: 13 VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72 V + + V+L + YL YA+S I RA+PD+RDG KPVHRR+++AM E+ D+ + Sbjct: 4 VAKEILPVNLEDEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMRELSNDWNRPY 63 Query: 73 KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132 KKSAR+VG+VIGK HPHGD +VYD++VR+AQ F RYPLI GQGNFG++DGD+AAA RYT Sbjct: 64 KKSARVVGDVIGKYHPHGDAAVYDTIVRMAQVFAMRYPLIDGQGNFGSVDGDAAAAMRYT 123 Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192 E RM ++A +L +D++ VDF D Y+ + EP V P++ PN L NG SGIAVGMAT++P Sbjct: 124 EIRMARIAHDLLADLDKETVDFVDNYDGSEQEPTVLPTRIPNFLVNGGSGIAVGMATNVP 183 Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252 HN+ E+ +A +ALID+ +++++L+ Y+ GPD PT II I E+YR GRG + Sbjct: 184 PHNLGEVIDACMALIDDDSLTVDELMTYLPGPDLPTAAII-NGVAGIREAYRTGRGRMVI 242 Query: 253 RARWCVEEVGR-GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311 RAR EE R G ++VTE+PYQV K+RL+EKIA L+ KRI + ++RDES +D Sbjct: 243 RARCEFEEEARSGKVSLIVTELPYQVNKARLLEKIAGLVKEKRIEGITELRDESDKDGIR 302 Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371 V+ R P++++ +++ + +E+ +NM L+ G+ P++ L +L +L HRREV Sbjct: 303 VVIELRRGEVPEVVLNNLYQHTQLESVVGINMVALAKGQ-PKLHSLRDVLDAFLRHRREV 361 Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR-------- 420 + RR+ + ++ R +L+GL +A NIDE+IA+I+ P K +++R Sbjct: 362 VTRRTVYELRKARERTHVLEGLAVALANIDEVIALIKASPGPAQAKAALLTRSWPPGSGI 421 Query: 421 ---------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453 + L+E Q AIL+LRL+ L LE+ +I E + Sbjct: 422 TEMLQRAGAEVSKPEGLDASLGLVGAAYRLSETQAQAILDLRLQRLTGLEQNKIIEEYRD 481 Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513 LL ++ ++L SG + I E+ +KE ++ R T +R D TL+ Sbjct: 482 LLGSINELLAILGSGDRLMAVIREELLAIKEHYADP------RRTEITANRVD-LTLED- 533 Query: 514 MIEKEPITVVISNRGWIRS--LKSHSVDL------SALHFKEGDSLKIALHAHTTDRILL 565 +I+ E + V +S+ G+ +S L S+ +A K+ D + A+T D +L Sbjct: 534 LIQPEDVVVTLSHGGYAKSQPLDSYQAQHRGGKGKAATKMKDEDFIDQLFLANTHDTLLC 593 Query: 566 LSTDGKAYTLPAGNLLSG-RG-HGEAIQLLIDLNHNQDI---VTAFVYDSTCKLLVVSSK 620 S+ GK Y L L G RG G+ I L+ L+ + I V+ +D + + + K Sbjct: 594 FSSHGKCYWLKVYELPHGSRGSRGKPIVNLLPLDPAERISAVVSIKEFDDQHFVFMATRK 653 Query: 621 GN 622 G Sbjct: 654 GT 655 >gi|46906231|ref|YP_012620.1| DNA gyrase, A subunit [Listeria monocytogenes serotype 4b str. F2365] gi|47093017|ref|ZP_00230796.1| DNA gyrase, A subunit [Listeria monocytogenes str. 4b H7858] gi|226222646|ref|YP_002756753.1| DNA gyrase subunit A [Listeria monocytogenes Clip81459] gi|254824773|ref|ZP_05229774.1| conserved hypothetical protein [Listeria monocytogenes FSL J1-194] gi|254851835|ref|ZP_05241183.1| conserved hypothetical protein [Listeria monocytogenes FSL R2-503] gi|254930862|ref|ZP_05264221.1| DNA gyrase subunit A [Listeria monocytogenes HPB2262] gi|300763379|ref|ZP_07073377.1| DNA gyrase subunit A [Listeria monocytogenes FSL N1-017] gi|46879495|gb|AAT02797.1| DNA gyrase, A subunit [Listeria monocytogenes serotype 4b str. F2365] gi|47018585|gb|EAL09339.1| DNA gyrase, A subunit [Listeria monocytogenes str. 4b H7858] gi|225875108|emb|CAS03796.1| DNA gyrase subunit A [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|258605127|gb|EEW17735.1| conserved hypothetical protein [Listeria monocytogenes FSL R2-503] gi|293582407|gb|EFF94439.1| DNA gyrase subunit A [Listeria monocytogenes HPB2262] gi|293594012|gb|EFG01773.1| conserved hypothetical protein [Listeria monocytogenes FSL J1-194] gi|300515656|gb|EFK42705.1| DNA gyrase subunit A [Listeria monocytogenes FSL N1-017] gi|328468328|gb|EGF39334.1| DNA gyrase subunit A [Listeria monocytogenes 1816] gi|328476149|gb|EGF46855.1| DNA gyrase subunit A [Listeria monocytogenes 220] gi|332310340|gb|EGJ23435.1| DNA gyrase subunit A [Listeria monocytogenes str. Scott A] Length = 842 Score = 414 bits (1064), Expect = e-113, Method: Compositional matrix adjust. Identities = 226/571 (39%), Positives = 355/571 (62%), Gaps = 22/571 (3%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 + + ++L + +L YA+S I RA+PD+RDG KPVHRRI++AM+++G+ A+KK Sbjct: 7 QRITEINLNKEMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYAMNDLGMTSDKAYKK 66 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 SARIVGEVIGK HPHGD +VY ++VR+AQ F R L+ G GNFG++DGD AAA RYTEA Sbjct: 67 SARIVGEVIGKYHPHGDTAVYFTMVRMAQDFSYRNMLVDGHGNFGSVDGDMAAAMRYTEA 126 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 RM++++ +L+ +++D +D+ D Y+ + EPV+ P++FPNLL NG+SGIAVGMAT+IP+H Sbjct: 127 RMSKISMELLRDINKDTIDYADNYDGSEREPVILPARFPNLLVNGSSGIAVGMATNIPTH 186 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 ++ E+ + LAL +P+I+I L+EYI GPDFPT G+I+ R I +Y GRG VR Sbjct: 187 HLGEVIDGVLALSHDPDITIRDLMEYIPGPDFPTAGMIM-GRSGIRRAYESGRGSITVRG 245 Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314 R +EE G IV+TEIPYQV K+RL+E+IAEL K+I + + DES ++ Sbjct: 246 RVDIEEKKNGKETIVITEIPYQVNKARLVERIAELAREKKIDGITSLNDESDRSGMRIVI 305 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 R + +++ ++F ++ ++T F +NM L + P+V+ L IL +L H++ V+ R Sbjct: 306 EVRRDISASVIVNNLFKMTALQTTFGINMLAL-VDNHPKVLNLKEILYHYLEHQKVVIRR 364 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAI 431 R+ F ++ + R IL+GL IA NID II +IR D K ++++F+L++ Q AI Sbjct: 365 RTEFELRKAEARAHILEGLRIALDNIDAIIKLIRGSKTSDVAKEGLMTQFNLSDKQAQAI 424 Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491 L++RL+ L LE +I+ E NL+A + ++L ++ I E+ E+K ++ Sbjct: 425 LDMRLQRLTGLEREKIEEEYQNLVALINDLKAILADDERILEIIREELEEIKVKYAD--- 481 Query: 492 LGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWI--------RSLKSHSVDLSA 542 +RRT E+ D +L+ + +I +E + + ++ RG+I RS + + Sbjct: 482 --KRRT---EILAGDLVSLEDEDLIPEEEVAITLTKRGYIKRLPLSTYRSQRRGGRGIQG 536 Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573 + E D ++ + T D +L + GK Y Sbjct: 537 MSTHEDDFVEHLVATSTHDTLLFFTNTGKVY 567 >gi|315613309|ref|ZP_07888218.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus sanguinis ATCC 49296] gi|315314544|gb|EFU62587.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus sanguinis ATCC 49296] Length = 822 Score = 414 bits (1063), Expect = e-113, Method: Compositional matrix adjust. Identities = 235/611 (38%), Positives = 369/611 (60%), Gaps = 40/611 (6%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 + N+ V+L ++ ++ YA+S I RA+PD+RDG KPVHRRI++ M+E+G+ K Sbjct: 3 DRNLVNVNLTKEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHK 62 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSARI G+V+GK HPHGD S+Y+++VR+AQ + RY L+ G GNFG++DGD AAA RYTE Sbjct: 63 KSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYTE 122 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 ARM+++A +L+ ++++ VDF D Y+ + EP+V P++FPNLL NG +GIAVGMAT+IP Sbjct: 123 ARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIPP 182 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E +A ++DNPE++ + L+E + GPDFPTG +++ + I ++Y G+G +R Sbjct: 183 HNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVM-GKSGIHKAYETGKGSIVLR 241 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312 +R +E G IVVTE PY V K+++ E I L+ KRI + +RDES E VR V Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 + K R ++++ ++F ++ M+T F NM + G VP+++ L IL ++ H++EV+ Sbjct: 302 IEVK-RDASANVILNNLFKMTQMQTNFGFNMLAIQNG-VPKILSLRQILDAYIEHQKEVV 359 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVD 429 RR+ F + + R IL+GLLIA +IDE+I IIR + + + ++S+F L+E Q Sbjct: 360 VRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSKFKLSERQSQ 419 Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489 AIL++RLR L LE +I+SE D L+A + +L ++ I E+ EVK F Sbjct: 420 AILDMRLRRLTGLERDKIQSEYDELIALIADLADILAKPERVAQIIKEELDEVKRKFGD- 478 Query: 490 TDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSL--------KSHSVDL 540 +RRT E+ + TL+ + +IE+ + + +SN+G+I+ L K + Sbjct: 479 ----KRRT---ELMIGEVLTLEDEDLIEETDVLITLSNKGYIKRLDQGEFTAQKRGGRGV 531 Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLLSGRG 585 K+ D ++ + T D +L + G+ Y LP NLL Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLK-LD 590 Query: 586 HGEAIQLLIDL 596 GE+IQ +I++ Sbjct: 591 EGESIQTIINV 601 >gi|300711736|ref|YP_003737550.1| DNA gyrase, A subunit [Halalkalicoccus jeotgali B3] gi|299125419|gb|ADJ15758.1| DNA gyrase, A subunit [Halalkalicoccus jeotgali B3] Length = 813 Score = 414 bits (1063), Expect = e-113, Method: Compositional matrix adjust. Identities = 243/659 (36%), Positives = 393/659 (59%), Gaps = 35/659 (5%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + V + +E+ Y+ YA+S I RA+PD+RDG KPVHRRI++AM EMG+ +A +KS+ Sbjct: 15 IDTVRIEDEMEQSYIDYAMSVIAGRALPDVRDGLKPVHRRILYAMHEMGVSSRSAHRKSS 74 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 +VGE +G HPHGD ++YD+LVR++Q F RYPL+ GQGNFG++DGD AAA RYTEARM Sbjct: 75 SVVGETMGDYHPHGDSAIYDTLVRMSQDFSMRYPLVDGQGNFGSVDGDPAAAMRYTEARM 134 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 + ++E +L ++++ VDF Y++ EP V P+ PNLL NG+SGIAVGM+T++P HN+ Sbjct: 135 SPISEELLTDIEKETVDFTANYDDRLEEPEVLPAAIPNLLVNGSSGIAVGMSTNVPPHNL 194 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 +E+ +A + LID+PE SI L+E++ GPDFPTG IV RE+I +Y GRG RVRA + Sbjct: 195 REVIDATIHLIDDPECSIPDLMEHVKGPDFPTGANIV-GREAIHSAYTTGRGRLRVRAEF 253 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFP 315 E+ + IV+TE+P+Q KSRL+E+IAE + +I + D+RDES D +RI + Sbjct: 254 EREQADKRER-IVITELPFQQNKSRLVERIAENVNEGKIEGISDLRDESDRDGIRIAIDL 312 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 K R + D++ E+ + +E F + +N+ + PQV+ L L+ ++ HR++V+ RR Sbjct: 313 K-RGANADVV-ENQLLEHHLERTFGV-INLALVDGQPQVLDLKETLEHYVEHRKDVVRRR 369 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN-EDK--PKPVMVSRFSLTENQVDAIL 432 S + + + R IL+G L A N+D ++ +IR ED+ K + F +E Q + I+ Sbjct: 370 SEYDLGEAEDRAHILEGRLKALDNVDSVVELIRGAEDRNGAKEALSDEFDFSEAQAEHIV 429 Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492 ++L SL LE +I E D L+ E E+++++L + + I E+RE++E + Sbjct: 430 RMQLGSLTSLERNEIDEEYDALVEEIERLETILANESELLGVIKEELREIREEYGDD--- 486 Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD--------LSALH 544 RRT+ E L + +I +E ++++ +++ + + D + + Sbjct: 487 --RRTSIIE---GGDTVLHEDLIPEEDSLILVTEDDYVKRMPVSAFDPQGRGGKGIIGAN 541 Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDI 602 KEGD + A+T D +L + GKAY + ++ +S G++ ++DL+ ++++ Sbjct: 542 LKEGDRVSKVFRANTHDYLLCFTNHGKAYQIRGFDVPEMSRTARGKSAVNILDLDPDEEL 601 Query: 603 VTAFV----YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657 TA V +D L +V+ G V+ +E A R + L +S E+ +V VT Sbjct: 602 -TAVVNTDDFDDEEFLTMVTENG---YVKRTEASAFERVRSSGLIAASLEEGDRLVDVT 656 >gi|322381378|ref|ZP_08055381.1| DNA gyrase subunit A-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321154954|gb|EFX47225.1| DNA gyrase subunit A-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 826 Score = 414 bits (1063), Expect = e-113, Method: Compositional matrix adjust. Identities = 219/572 (38%), Positives = 363/572 (63%), Gaps = 22/572 (3%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 VK V + F + ++ YA+S I RA+PD+RDG KPVHRRI++AMSE+G+ KKSA Sbjct: 17 VKEVDIGFEMRNSFMDYAMSIIVSRALPDVRDGLKPVHRRILYAMSELGITPDKPHKKSA 76 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 RIVGEVIGK HPHGD +VY+++VR+AQ F RY L+ G GNFG+IDGD AAA RYTEAR+ Sbjct: 77 RIVGEVIGKYHPHGDAAVYETMVRMAQDFSLRYMLVDGHGNFGSIDGDMAAAMRYTEARL 136 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 +++A +L+ ++++ +D+ Y+ E+ EPVV P++FPNL+ NG+SGIAVGMAT+IP HN+ Sbjct: 137 SKIAMELLRDINKETIDYTPNYDGEEQEPVVLPARFPNLMVNGSSGIAVGMATNIPPHNL 196 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ + L LI+NP+++ +L+ I GPDFPTG I+ RE I ++Y GRG +RA+ Sbjct: 197 GEVIDGILMLIENPDVTPLELMSAIKGPDFPTGAYIL-GREGIRQAYSTGRGSVTMRAKT 255 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316 +EEV + I+V E+PYQV K+RLIEKIAEL+ K+I + D+RDES + ++ Sbjct: 256 TIEEVNNKAR-IIVDELPYQVNKARLIEKIAELVREKKIDGITDLRDESDRNGMRIVIEL 314 Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376 R ++P++++ ++F + +++ F + +N+ + P+V+ L +L +L H+R V+ RR+ Sbjct: 315 RRDVNPNVVLNNLFKHTALQSNFGI-INIALVNGEPKVLNLKEMLYYYLEHQRVVIRRRT 373 Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAILN 433 + ++ + R IL+GL IA ++DE+IA+IR+ D + ++ +F L+ +Q AIL+ Sbjct: 374 EYELRKAEARAHILEGLRIALDHLDEVIALIRSSRTTDIARTGLMEQFELSHDQAQAILD 433 Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493 +RL+ L LE +I++E L+A+ ++ ++L + I+ E+++++ + Sbjct: 434 MRLQRLTGLEREKIENEYKELMAKIAELKAILADEQLILKIISEELQQIRASYGDE---- 489 Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHF 545 RRT E++ + A + +I +E + + I++ G++ RS + + + Sbjct: 490 -RRT---EITIGEDAIEDEDLIPREEVVITITHSGYVKRLPVSTYRSQRRGGRGVVGMDT 545 Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPA 577 K D ++ ++ ++ + GK Y L A Sbjct: 546 KNNDFVEHLFVTNSHHYLMFFTDKGKVYRLKA 577 >gi|218961618|ref|YP_001741393.1| DNA gyrase, A subunit [Candidatus Cloacamonas acidaminovorans] gi|167730275|emb|CAO81187.1| DNA gyrase, A subunit [Candidatus Cloacamonas acidaminovorans] Length = 874 Score = 414 bits (1063), Expect = e-113, Method: Compositional matrix adjust. Identities = 258/702 (36%), Positives = 400/702 (56%), Gaps = 40/702 (5%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 N+ V + L++ YL Y++S I RA+PD+RDG KP RRII+AM E+ L G+ F+K Sbjct: 6 NIIPVQIEEQLKQAYLDYSMSVIVSRALPDIRDGLKPSQRRIIYAMHELNLTPGSHFRKC 65 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 A+I G+ G HPHG+Q VY +LVRLAQP++ RYPLI GQGNFG+IDGD AA RYTEAR Sbjct: 66 AKIAGDTSGNYHPHGEQVVYPTLVRLAQPWIMRYPLIEGQGNFGSIDGDPPAAMRYTEAR 125 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 + ++ +L +++D V+FR Y+E EP VFP++FPNLL NG+SGIAVGMAT++P HN Sbjct: 126 LQKITMEMLTELEKDTVEFRSNYDETRQEPTVFPARFPNLLVNGSSGIAVGMATNMPPHN 185 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 + E+C+A +ALIDNP++ LLEYI GPDFPTGG I+ + E I E + GRG +R Sbjct: 186 IGEVCDAIIALIDNPDLQPLDLLEYIKGPDFPTGGFILGT-EGIREYFETGRGKIIMRGE 244 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314 +E + I++ IPYQ+ S+LIE++ EL+ K+I + DIRDES D +RIV+ Sbjct: 245 TEIETLPNDIEQIIIRSIPYQLSTSQLIERMVELVKDKKIEGISDIRDESGRDGMRIVIQ 304 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K R+ D ++ ++ + +++ F + +N+ + VPQV+ + +L+ ++ R EV+ R Sbjct: 305 VK-RNHDAQVVRNLLYKYTQLQSTFGV-INLCLIDGVPQVVNMKEMLQNFIDFRHEVVLR 362 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVDAI 431 R+ F ++ R+ IL+GL IA N+DE+IA+IR P V +F L+E Q AI Sbjct: 363 RTQFDLRNAKERLHILEGLKIALDNLDEVIALIRASQTPNDASVGLQEKFGLSEIQAKAI 422 Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491 L++RL+ L LE +I++E LL ++ L+ + + N I E E+++ F+ Sbjct: 423 LDMRLQRLTGLERDKIETEYQELLIIIARLTELVEHKELRMNLIKEETAEIRDKFAD--- 479 Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD--------LSAL 543 +R TT + + +I E + V I++ G+++ L + LSA Sbjct: 480 --KRLTTIIPAPAG--SFNMEDLIADEMVVVTITHDGYVKRLPVDTYKVQARGGKGLSAS 535 Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQD 601 + KE D ++ A T ILL + G Y L + S G+AI L+ L D Sbjct: 536 NLKEEDFIQYLFVASTHSYILLFTDHGMCYWLKVFEIPEASRTARGKAIVNLVKLAEG-D 594 Query: 602 IVTAFV----YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV----SSEEKMKLV 653 + AFV + +++ + G +V+++ + A + +K +E + Sbjct: 595 RIKAFVTLKDFHPEQNIVMCTRNG---LVKKTPLTAFSHPRSIGIKAIKLREGDELIDAR 651 Query: 654 VKVTGDHVAVVGENRKLLIFSIDQIPEMSRG----KGVRLQS 691 + GD + + + K FS +I M R KG+RL++ Sbjct: 652 ICEAGDDILLATHDGKCNRFSESEIRSMRRFSQGVKGIRLRN 693 >gi|82777638|ref|YP_403987.1| DNA gyrase subunit A [Shigella dysenteriae Sd197] gi|309785078|ref|ZP_07679711.1| DNA gyrase, A subunit [Shigella dysenteriae 1617] gi|81241786|gb|ABB62496.1| DNA gyrase, subunit A [Shigella dysenteriae Sd197] gi|308927448|gb|EFP72922.1| DNA gyrase, A subunit [Shigella dysenteriae 1617] Length = 875 Score = 414 bits (1063), Expect = e-113, Method: Compositional matrix adjust. Identities = 254/659 (38%), Positives = 380/659 (57%), Gaps = 65/659 (9%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + V++ L+ YL YA+S I RA+PD+RDG KPVHRR+++AM+ +G D+ A+KKSA Sbjct: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG+IDGDSAAA RYTE R+ Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 ++A ++ ++++ VDF D Y+ + P V P+K PNLL NG+SGIAVGMAT+IP HN+ Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ L ID+ +ISIE L+E+I GPDFPT II R I E+YR GRG +RAR Sbjct: 188 TEVINGCLVYIDDEDISIEGLMEHIPGPDFPTAAII-NGRRGIEEAYRTGRGKVYIRARA 246 Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314 +E + G I+V EIPYQV K+RLIEKIAEL+ KR+ + +RDES +D +RIV+ Sbjct: 247 EMEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K ++ ++++ +++ + ++ F +NM L G+ P++M L I+ ++ HRREV+ R Sbjct: 307 VKRDAVG-EVVLNNLYSQTQLQVSFGINMVALHHGQ-PKIMNLKDIIAAFVRHRREVVTR 364 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----------- 420 R+ F ++ R IL+ L +A NID II +IR+ P K +V+ Sbjct: 365 RTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAML 424 Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457 + LTE Q AIL+LRL+ L LE ++ E LL + Sbjct: 425 ERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQ 484 Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517 ++ +L S + I E+ V+E F G +R T + AD + +I + Sbjct: 485 IAELLRILGSADRLMEVIREELELVREQF------GDKRRTEITANSADINL--EDLITQ 536 Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569 E + V +S++G+++ + + SA KE D + L A+T D IL S+ Sbjct: 537 EDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSR 596 Query: 570 GKAYTLPAGNLLSG-RG-HGEAIQLLIDLNHNQDIVTAFV----YDSTCKLLVVSSKGN 622 G+ Y++ L RG G I L+ L ++ I TA + ++ K+ + ++ G Sbjct: 597 GRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERI-TAILPVTEFEEGVKVFMATANGT 654 >gi|83647663|ref|YP_436098.1| DNA gyrase subunit A [Hahella chejuensis KCTC 2396] gi|83635706|gb|ABC31673.1| DNA gyrase, A subunit [Hahella chejuensis KCTC 2396] Length = 879 Score = 414 bits (1063), Expect = e-113, Method: Compositional matrix adjust. Identities = 276/798 (34%), Positives = 443/798 (55%), Gaps = 86/798 (10%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 V++ L++ YL YA+S I RA+PD RDG KPVHRR++ AM+E+G D+ ++KKSAR+V Sbjct: 11 VNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMNELGNDWNKSYKKSARVV 70 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG+IDGDSAAA RYTE RM ++ Sbjct: 71 GDVIGKYHPHGDSAVYDTIVRMAQPFSLRYTLVDGQGNFGSIDGDSAAAMRYTEIRMEKI 130 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A +L +D++ VDF Y+ + PVV P+K PNLL NG+SGIAVGMAT+IP HN+ E+ Sbjct: 131 AHEMLADLDKETVDFAPNYDGSEQIPVVLPTKVPNLLVNGSSGIAVGMATNIPPHNLTEV 190 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 LA +DN +I+I++L+E+I GPDFPT II R I+E+YR GRG +RAR+ +E Sbjct: 191 VNGCLAYLDNSDITIDELMEFIPGPDFPTAAII-NGRAGILEAYRTGRGRIYIRARYEIE 249 Query: 260 EVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318 + + S IV+TEIPYQV K++L+EKIAEL+ K++ + ++RDES+++ V+ R Sbjct: 250 QDKKTSKETIVITEIPYQVNKAKLVEKIAELVKEKKVEGITELRDESSKEGMRVVIELRR 309 Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378 + D+LM ++F L+ +ET F +NM L G P+++ L ++ ++ HRREV+ RR+ + Sbjct: 310 GENADVLMNNLFALTPLETVFGINMVALINGE-PKLLNLKDCIECFVRHRREVVTRRTIY 368 Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIR-----------------------------N 409 ++ R IL+G +A NID +IA+I+ Sbjct: 369 ELRKARERGHILEGQAVALANIDPVIAVIKASSTGAEAKERLMAQGWAPGAVTGMLERAG 428 Query: 410 EDKPKP--------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKI 461 ED +P + + L+E Q +IL+LRL+ L LE +I E +++ + ++ Sbjct: 429 EDACRPDDLAPEFGLREGLYYLSEVQAQSILDLRLQKLTGLEIEKINDEYRSIIEQIAEL 488 Query: 462 DSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPIT 521 +L + ++ I E+ V+E F G R T S+ D +I +E + Sbjct: 489 LEILQNPERLMAVIREELEAVREEF------GDVRVTEITASKRDLTIAD--LIAEEDMV 540 Query: 522 VVISNRGWIRS--LKSHSVD------LSALHFKEGDSLKIALHAHTTDRILLLSTDG--- 570 V +S++G+ ++ L+++ +A ++ D ++ L A++ D IL ++ G Sbjct: 541 VTLSHKGYAKTQPLEAYQAQKRGGKGKAATAIRDEDFVEKLLIANSHDTILCFTSHGKLY 600 Query: 571 --KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFI 625 K Y +P + +S G I ++ L N+ I T Y + + + + +G Sbjct: 601 WLKTYEIPQASRIS---RGRPIVNILPLAENERITTMLPVREYTADHYVFMATRQGT--- 654 Query: 626 VEESEIIANTR-KGKTFLKVSSEEKMKLVVKVTGD---HVAVVGENRKLLIFSIDQIPEM 681 V+++ + +R + + ++ +E L+ D V + + K + F+ D + M Sbjct: 655 VKKTPLENFSRPRSSGLIALALDEGDMLIGAAITDGKKDVMLFSSSGKAIRFNEDDVRPM 714 Query: 682 SR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGR-SYNR----SENDLLGWLGKRGG 735 R +GVR G V+ I + +I +A R Y + SE + G RGG Sbjct: 715 GRTARGVRGIRLAQG--QTVVSLIIPQEDAYILTASRKGYGKRTAVSEFPVYG----RGG 768 Query: 736 VGSLVPKGFPRSGKFLSS 753 G + + R+G +S+ Sbjct: 769 QGVIAIQCSERNGDLVSA 786 >gi|293365593|ref|ZP_06612302.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus oralis ATCC 35037] gi|307703544|ref|ZP_07640486.1| DNA gyrase, A subunit [Streptococcus oralis ATCC 35037] gi|291315961|gb|EFE56405.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus oralis ATCC 35037] gi|307622951|gb|EFO01946.1| DNA gyrase, A subunit [Streptococcus oralis ATCC 35037] Length = 822 Score = 414 bits (1063), Expect = e-113, Method: Compositional matrix adjust. Identities = 235/611 (38%), Positives = 369/611 (60%), Gaps = 40/611 (6%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 + N+ V+L ++ ++ YA+S I RA+PD+RDG KPVHRRI++ M+E+G+ K Sbjct: 3 DRNLVNVNLTKEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHK 62 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSARI G+V+GK HPHGD S+Y+++VR+AQ + RY L+ G GNFG++DGD AAA RYTE Sbjct: 63 KSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYTE 122 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 ARM+++A +L+ ++++ VDF D Y+ + EP+V P++FPNLL NG +GIAVGMAT+IP Sbjct: 123 ARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIPP 182 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E +A ++DNPE++ + L+E + GPDFPTG +++ + I ++Y G+G +R Sbjct: 183 HNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVM-GKSGIHKAYETGKGSIVLR 241 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312 +R +E G IVVTE PY V K+++ E I L+ KRI + +RDES E VR V Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 + K R ++++ ++F ++ M+T F NM + G VP+++ L IL ++ H++EV+ Sbjct: 302 IEVK-RDASANVILNNLFKMTQMQTNFGFNMLAIQNG-VPKILSLRQILDAYIEHQKEVV 359 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVD 429 RR+ F + + R IL+GLLIA +IDE+I IIR + + + ++S+F L+E Q Sbjct: 360 VRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSKFKLSERQSQ 419 Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489 AIL++RLR L LE +I+SE D L+A + +L ++ I E+ EVK F Sbjct: 420 AILDMRLRRLTGLERDKIQSEYDELIALIADLADILAKPERVAQIIKEELDEVKRKFGD- 478 Query: 490 TDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSL--------KSHSVDL 540 +RRT E+ + TL+ + +IE+ + + +SN+G+I+ L K + Sbjct: 479 ----KRRT---ELMIGEVLTLEDEDLIEETDVLITLSNKGYIKRLDQGEFTAQKRGGRGV 531 Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLLSGRG 585 K+ D ++ + T D +L + G+ Y LP NLL Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLK-LD 590 Query: 586 HGEAIQLLIDL 596 GE+IQ +I++ Sbjct: 591 EGESIQTIINV 601 >gi|237808193|ref|YP_002892633.1| DNA gyrase, A subunit [Tolumonas auensis DSM 9187] gi|237500454|gb|ACQ93047.1| DNA gyrase, A subunit [Tolumonas auensis DSM 9187] Length = 862 Score = 414 bits (1063), Expect = e-113, Method: Compositional matrix adjust. Identities = 262/707 (37%), Positives = 393/707 (55%), Gaps = 71/707 (10%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 +++ L YL YA+S I RA+PD+RDG KPVHRR++ AM E+ D+ +KKSAR+V Sbjct: 11 INIEDELRNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELSNDWNKPYKKSARVV 70 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGD +VYD++VR+AQ F RY L+ GQGNFG++DGDSAAA RYTE RM ++ Sbjct: 71 GDVIGKYHPHGDSAVYDTIVRMAQDFSMRYTLVDGQGNFGSVDGDSAAAMRYTEIRMDRI 130 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A +L ++++ VD+ Y+ + P V P+K PNLL NG+SGIAVGMAT+IP HN+ E+ Sbjct: 131 AHELLADLEKETVDWVPNYDGTEQIPAVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEV 190 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 + LAL++N E++I++L++ I GPDFPTGGII R I+++YR GRG VRAR +E Sbjct: 191 VDGCLALMENSELTIDELIQLIPGPDFPTGGII-NGRSGILDAYRTGRGKIYVRARTEIE 249 Query: 260 -EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318 + G I+VTE+PY V K+RL+EKIAEL+ K+I + +RDES +D V+ R Sbjct: 250 TDEKNGKESIIVTELPYTVNKARLVEKIAELVKDKKIEGITALRDESDKDGMRVVIELRR 309 Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378 ++++ +++ + M+ F +NM L G+ P+ + L IL ++ HRREV+ RR+ F Sbjct: 310 GELTEVMLNNLYTHTQMQNVFGINMVALVNGQ-PKTLNLKEILAAFIDHRREVVTRRTVF 368 Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR--------------- 420 ++ R IL+GL IA NID +I +I+N P K +V+R Sbjct: 369 ELRKARERAHILEGLAIALANIDPVIELIKNSSSPAEAKQGLVARGWALGAVAEMLERAG 428 Query: 421 -------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKI 461 + LTE Q AIL+LRL L LE +I E LL E ++ Sbjct: 429 GDAARPEWLEPEFGIRDDHYFLTEQQAQAILDLRLHKLTGLEHEKILDEYRELLGEIAEL 488 Query: 462 DSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPIT 521 +L S ++ I E+ VK F +RRT E+ A + +I E + Sbjct: 489 LRILASPERLMEVIREELEFVKSQFGD-----KRRT---EIQAASIEINMEDLITPEDVV 540 Query: 522 VVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573 V +S+ G+++ + + +A K+ D ++ L A+T D IL ST GK Y Sbjct: 541 VTLSHEGYVKYQPLSDYEAQRRGGRGKAAAKVKDEDFVEQLLVANTHDTILCFSTQGKVY 600 Query: 574 TLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEE 628 L L S G I L+ L+ N+ I YD + + G V++ Sbjct: 601 WLKVYQLPEASRTARGRPIINLLPLDENERITAILPVKSYDDDKYVFFATGDGT---VKK 657 Query: 629 SEIIANTRKGKTFLK-VSSEEKMKLVVKVTGDHVAVVGENRKLLIFS 674 +E+ A +R + ++ ++ E L+ VA+ N ++++FS Sbjct: 658 TELSAYSRPLSSGIRAINLNEGDSLI------GVAITDGNSEIMLFS 698 >gi|116332687|ref|YP_794214.1| DNA gyrase, A subunit [Lactobacillus brevis ATCC 367] gi|116098034|gb|ABJ63183.1| DNA gyrase subunit A [Lactobacillus brevis ATCC 367] gi|238767640|dbj|BAH66655.1| DNA gyrase subunit A [Lactobacillus brevis] Length = 844 Score = 414 bits (1063), Expect = e-113, Method: Compositional matrix adjust. Identities = 235/618 (38%), Positives = 369/618 (59%), Gaps = 43/618 (6%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 V V L + +L YA+S I +RA+PD+RDG KPVHRRI++ M E+G+ F+KSA Sbjct: 10 VTDVDLSQTMRTSFLDYAMSVIVQRALPDVRDGLKPVHRRILYDMHELGITPDKPFRKSA 69 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+V+GK HPHGD +VY+S+VR+AQ F RY L+ G GNFG++DGD AAA RYTEAR+ Sbjct: 70 RMVGDVLGKYHPHGDSAVYESMVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAMRYTEARL 129 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 +++A +L+ +++D +DF+D Y+ + EPVV PS+FPNLL NG SGIAVGMAT+IP HN+ Sbjct: 130 SKIAMEMLRDINKDTIDFQDNYDGSEREPVVLPSRFPNLLVNGASGIAVGMATNIPPHNL 189 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ A L+ NP+ S+ L+E + GPDFPTGGI++ + +I +Y G+G +RA+ Sbjct: 190 TEVISALHILMKNPDASLADLMEALPGPDFPTGGIVM-GKAAIRRAYETGKGTITLRAKV 248 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316 +EE G IV TEIPY V K++LIE+IAEL KRI + D+ DE+ ++ Sbjct: 249 DIEEEKNGKQRIVATEIPYMVNKAKLIERIAELARDKRIEGITDVNDETDRTGMRIVIDV 308 Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376 R ++++ +++ ++ M+T F +NM + G P+V+ L IL+ +L + EV+ RR+ Sbjct: 309 RRDASAEVILNNLYKMTLMQTSFGINMLAIVNG-APKVLGLKAILQYYLEFQLEVIRRRT 367 Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAILN 433 F ++ + R IL+GL IA +IDEII IIR D K +++RFSL++ Q AIL+ Sbjct: 368 EFDLRKAEARAHILEGLRIALDHIDEIITIIRQSQTADVAKQELITRFSLSDKQSQAILD 427 Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493 +RL L LE +++ E +++A + +L S ++Q I E+ E++ F Sbjct: 428 MRLVRLTGLEREKVEKEYADVMANIKDYKEILASKERQQAIIYEELLEIQNKFGDD---- 483 Query: 494 RRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSLKSHSVD--------LSALH 544 RRT E+ + +L+ + +I +E + V +++ G+I+ L + + + Sbjct: 484 -RRT---ELMVGEVLSLEDEDLIAEEDVVVSLTHNGYIKRLPTSEFKAQNRGGKGVQGMG 539 Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTL---------------PAGNLLSGRGHGEA 589 + D ++ + T D +L + GK Y + P NLL G + E Sbjct: 540 VHDDDFIEHLVATSTHDMLLFFTNTGKVYRMKGYEIPEYGRTAKGIPVINLL-GINNNEH 598 Query: 590 IQLLIDL-----NHNQDI 602 +Q +I++ N N+D+ Sbjct: 599 VQAVINVANPGENDNRDL 616 >gi|332290506|ref|YP_004421358.1| DNA gyrase subunit A [Gallibacterium anatis UMN179] gi|330433402|gb|AEC18461.1| DNA gyrase subunit A [Gallibacterium anatis UMN179] Length = 877 Score = 414 bits (1063), Expect = e-113, Method: Compositional matrix adjust. Identities = 250/657 (38%), Positives = 383/657 (58%), Gaps = 61/657 (9%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 +++ V++ ++ YL YA+S I RA+PD+RDG KPVHRR++ AM+ G D+ ++K Sbjct: 6 KDIIPVNIEEEMKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMAVGGNDYNKPYRK 65 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 SARIVG+VIGK HPHGD +VYD+LVR+AQPF RYPL+ GQGNFG+IDGDS AA RYTEA Sbjct: 66 SARIVGDVIGKYHPHGDSAVYDTLVRMAQPFSLRYPLVDGQGNFGSIDGDSPAAMRYTEA 125 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 RMTQ+A +L +D++ VD++ Y+ + P V P+K P LL NG+SGIAVGMAT+IP H Sbjct: 126 RMTQIAHELLADLDKETVDYQPNYDGSEMIPEVLPTKVPALLVNGSSGIAVGMATNIPPH 185 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 N+ E+ + LA IDN +I+I++L+ YI GPDFPT II + I E+Y+ GRG +RA Sbjct: 186 NLGEVVDGCLAYIDNEQITIDELMSYIPGPDFPTAAII-NGKRGIEEAYKTGRGKIYIRA 244 Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVL 313 + +E +G I+V EIPYQV K+RLIEKIAEL+ K+I + +RDES +D +RIV+ Sbjct: 245 KADIETDDKGRESIIVHEIPYQVNKARLIEKIAELVKEKKIEGISGLRDESDKDGMRIVI 304 Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373 K ++ ++++ +++ L+ ++ F +N+ L G+ P+++ L +++ ++ HRREV+ Sbjct: 305 EVKRDAVG-EIVLNNLYALTQLQVTFGINIVALDHGQ-PKLLNLKELIEAFVLHRREVVT 362 Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR---------- 420 RR+ + ++ R IL+GL IA NID II +IRN P K ++S+ Sbjct: 363 RRTVYELRKARERAHILEGLAIALANIDPIIELIRNAPTPAAAKEGLLSQPWQLGNVEAM 422 Query: 421 ------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLA 456 + L+E Q AIL+LRL+ L LE +I E +LL Sbjct: 423 LAAAGVDAARPEDLDENLGIRGGVYHLSEAQAQAILDLRLQKLTGLEHEKILDEYKSLLD 482 Query: 457 EKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE 516 ++ +L+S + I E+ ++K ++ RRT E++ + + +I Sbjct: 483 VIAELLHILHSPARLMEVIREELEKIKAQYNDP-----RRT---EITASSGDINLEDLIN 534 Query: 517 KEPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568 E + V +S+ G+++ + + SA K+ D ++ L A+T D IL S+ Sbjct: 535 PEDVVVTLSHEGYVKYQPLSDYEAQRRGGKGKSATKMKDEDFIEKLLVANTHDTILCFSS 594 Query: 569 DGKAYTLPAGNL-LSGRG-HGEAIQLLIDLNHNQDIVTAFVYDSTC--KLLVVSSKG 621 G+ Y L L + RG G I L+ L N+ I K +V+++ G Sbjct: 595 RGRLYWLKVYQLPQASRGARGRPIVNLLPLEENERITAILPVKEYAEDKFIVMATAG 651 >gi|332360261|gb|EGJ38074.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus sanguinis SK355] Length = 826 Score = 414 bits (1063), Expect = e-113, Method: Compositional matrix adjust. Identities = 237/615 (38%), Positives = 370/615 (60%), Gaps = 40/615 (6%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 + N+ V+L ++ ++ YA+S I RA+PD+RDG KPVHRRI++ M+E+G+ K Sbjct: 10 DRNLVNVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPEKPHK 69 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSARI G+V+GK HPHGD S+Y+++VR+AQ + RY L+ G GNFG++DGD AAA RYTE Sbjct: 70 KSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYTE 129 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 ARM+++A +L+ ++++ VD+ D Y+ + EPVV P++FPNLL NG +GIAVGMAT+IP Sbjct: 130 ARMSKIALEMLRDINKNTVDYIDNYDASEREPVVLPARFPNLLVNGATGIAVGMATNIPP 189 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E +A +IDNPE + ++E + GPDFPTG +++ + I +Y G+G +R Sbjct: 190 HNLGESIDAVKLVIDNPEATTRDIMEVLPGPDFPTGALVM-GKSGIHRAYETGKGSIVLR 248 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312 +R +EE+ G IVVTE PY V K+++ E I L+ KRI + +RDES E VR V Sbjct: 249 SRTEIEEMKNGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVRFV 308 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 + + R +++ ++F L+ M+T F NM + G VP+++ L IL ++ H++EV+ Sbjct: 309 IEVR-RDASAHVILNNLFKLTQMQTNFSFNMLAIQNG-VPKILSLREILLAYIEHQKEVV 366 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVD 429 RR++F + + R IL GLLIA +IDE+I IIRN + + + ++++F L+E Q Sbjct: 367 TRRTAFDKEKAEARAHILAGLLIALDHIDEVIRIIRNSETDAEAQAELMAKFELSERQSQ 426 Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489 AIL++RLR L LE +I+SE D L+A + +L ++ I E+ EVK F+ Sbjct: 427 AILDMRLRRLTGLERDKIQSEYDELIALIADLADILAKPERVITIIKEELDEVKRKFADD 486 Query: 490 TDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSL--------KSHSVDL 540 RRT E+ + +L+ + +IE+ + + +SN+G+I+ L K + Sbjct: 487 -----RRT---ELMVGEVLSLEDEDLIEEADVLITLSNKGYIKRLNQAEFTAQKRGGRGV 538 Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLLSGRG 585 K+ D +K + T DR+L + G+ Y LP NLL Sbjct: 539 QGTGVKDDDFVKELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLK-LD 597 Query: 586 HGEAIQLLIDLNHNQ 600 GE IQ +I++ ++ Sbjct: 598 EGENIQTIINVQQDR 612 >gi|324991112|gb|EGC23046.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus sanguinis SK353] Length = 826 Score = 414 bits (1063), Expect = e-113, Method: Compositional matrix adjust. Identities = 256/713 (35%), Positives = 410/713 (57%), Gaps = 52/713 (7%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 + N+ V+L ++ ++ YA+S I RA+PD+RDG KPVHRRI++ M+E+G+ K Sbjct: 10 DRNLVNVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPEKPHK 69 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSARI G+V+GK HPHGD S+Y+++VR+AQ + RY L+ G GNFG++DGD AAA RYTE Sbjct: 70 KSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYVLVDGHGNFGSMDGDGAAAQRYTE 129 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 ARM+++A +L+ ++++ VD+ D Y+ + EPVV P++FPNLL NG +GIAVGMAT+IP Sbjct: 130 ARMSKIALEMLRDINKNTVDYIDNYDASEREPVVLPARFPNLLVNGATGIAVGMATNIPP 189 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E +A ++DNP+ + ++E + GPDFPTG +++ + I +Y G+G +R Sbjct: 190 HNLGESIDAVKLVMDNPDATTRDIMEVLPGPDFPTGALVM-GKSGIYRAYETGKGSIVLR 248 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312 +R +EE+ G IVVTE PY V K+++ E I L+ KRI + +RDES E VR V Sbjct: 249 SRTEIEEMKNGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVRFV 308 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 + + R +++ ++F L+ M+T F NM + G VP+++ L IL ++ H++EV+ Sbjct: 309 IEVR-RDASAHVILNNLFKLTQMQTNFSFNMLAIQNG-VPKILSLREILLAYIEHQKEVV 366 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVD 429 RR++F + + R IL GLLIA +IDE+I IIRN + + + ++++F L+E Q Sbjct: 367 IRRTAFDKEKAEARAHILAGLLIALDHIDEVIRIIRNSETDAEAQAELMAKFELSERQSQ 426 Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489 AIL++RLR L LE +I+SE D L+A + +L ++ I E+ EVK F+ Sbjct: 427 AILDMRLRRLTGLERDKIQSEYDELIALIADLADILAKPERVIAIIKEELDEVKRKFADD 486 Query: 490 TDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSL--------KSHSVDL 540 RRT E+ + +L+ + +IE+ + + +SN+G+I+ L K + Sbjct: 487 -----RRT---ELMVGEVLSLEDEDLIEEADVLITLSNKGYIKRLNQAEFTAQKRGGRGV 538 Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLLSGRG 585 K+ D +K + T DR+L + G+ Y LP NLL Sbjct: 539 QGTGVKDDDFVKELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLK-LD 597 Query: 586 HGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK-GKTFLKV 644 GE IQ +I++ ++ ++++ +T +V + F AN R+ G L + Sbjct: 598 EGETIQTIINVQQDRSD-DSYLFFTTRHGVVKRTSVTEF--------ANIRQNGLKALNL 648 Query: 645 SSEEKMKLVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSR-GKGVRLQSYKDG 695 E+++ V G ++G + F+ + MSR GVR + +DG Sbjct: 649 KDEDELINVFLTDGAADVIIGTKFGYSVRFNETAVRSMSRIATGVRGVNLRDG 701 >gi|331266217|ref|YP_004325847.1| DNA gyrase, subunit A [Streptococcus oralis Uo5] gi|326682889|emb|CBZ00506.1| DNA gyrase, subunit A [Streptococcus oralis Uo5] Length = 822 Score = 414 bits (1063), Expect = e-113, Method: Compositional matrix adjust. Identities = 235/611 (38%), Positives = 369/611 (60%), Gaps = 40/611 (6%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 + N+ V+L ++ ++ YA+S I RA+PD+RDG KPVHRRI++ M+E+G+ K Sbjct: 3 DRNLVNVNLTKEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHK 62 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSARI G+V+GK HPHGD S+Y+++VR+AQ + RY L+ G GNFG++DGD AAA RYTE Sbjct: 63 KSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYTE 122 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 ARM+++A +L+ ++++ VDF D Y+ + EP+V P++FPNLL NG +GIAVGMAT+IP Sbjct: 123 ARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIPP 182 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E +A ++DNPE++ + L+E + GPDFPTG +++ + I ++Y G+G +R Sbjct: 183 HNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVM-GKSGIHKAYETGKGSIVLR 241 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312 +R +E G IVVTE PY V K+++ E I L+ KRI + +RDES E VR V Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 + K R ++++ ++F ++ M+T F NM + G VP+++ L IL ++ H++EV+ Sbjct: 302 IEVK-RDASANVILNNLFKMTQMQTNFGFNMLAIQNG-VPKILSLRQILDAYIEHQKEVV 359 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVD 429 RR+ F + + R IL+GLLIA +IDE+I IIR + + + ++S+F L+E Q Sbjct: 360 VRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSKFKLSERQSQ 419 Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489 AIL++RLR L LE +I+SE D L+A + +L ++ I E+ EVK F Sbjct: 420 AILDMRLRRLTGLERDKIQSEYDELIALIADLADILAKPERVAQIIKEELDEVKRKFGD- 478 Query: 490 TDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSL--------KSHSVDL 540 +RRT E+ + TL+ + +IE+ + + +SN+G+I+ L K + Sbjct: 479 ----KRRT---ELMIGEVLTLEDEDLIEETDVLITLSNKGYIKRLDQGEFTAQKRGGRGV 531 Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLLSGRG 585 K+ D ++ + T D +L + G+ Y LP NLL Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLK-LD 590 Query: 586 HGEAIQLLIDL 596 GE+IQ +I++ Sbjct: 591 EGESIQTIINV 601 >gi|327474471|gb|EGF19877.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus sanguinis SK408] Length = 826 Score = 414 bits (1063), Expect = e-113, Method: Compositional matrix adjust. Identities = 256/713 (35%), Positives = 410/713 (57%), Gaps = 52/713 (7%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 + N+ V+L ++ ++ YA+S I RA+PD+RDG KPVHRRI++ M+E+G+ K Sbjct: 10 DRNLVNVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPEKPHK 69 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSARI G+V+GK HPHGD S+Y+++VR+AQ + RY L+ G GNFG++DGD AAA RYTE Sbjct: 70 KSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYTE 129 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 ARM+++A +L+ ++++ VD+ D Y+ + EPVV P++FPNLL NG +GIAVGMAT+IP Sbjct: 130 ARMSKIALEMLRDINKNTVDYIDNYDASEREPVVLPARFPNLLVNGATGIAVGMATNIPP 189 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E +A ++DNP+ + ++E + GPDFPTG +++ + I +Y G+G +R Sbjct: 190 HNLGESIDAVKLVMDNPDATTRDIMEVLPGPDFPTGALVM-GKSGIYRAYETGKGSIVLR 248 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312 +R +EE+ G IVVTE PY V K+++ E I L+ KRI + +RDES E VR V Sbjct: 249 SRTEIEEMKNGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVRFV 308 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 + + R +++ ++F L+ M+T F NM + G VP+++ L IL ++ H++EV+ Sbjct: 309 IEVR-RDASAHVILNNLFKLTQMQTNFSFNMLAIQNG-VPKILSLREILLAYIEHQKEVV 366 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVD 429 RR++F + + R IL GLLIA +IDE+I IIRN + + + ++++F L+E Q Sbjct: 367 IRRTAFDKEKAEARAHILAGLLIALDHIDEVIRIIRNSETDAEAQAELMAKFELSERQSQ 426 Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489 AIL++RLR L LE +I+SE D L+A + +L ++ I E+ EVK F+ Sbjct: 427 AILDMRLRRLTGLERDKIQSEYDELIALIADLADILAKPERVIAIIKEELDEVKRKFADD 486 Query: 490 TDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSL--------KSHSVDL 540 RRT E+ + +L+ + +IE+ + + +SN+G+I+ L K + Sbjct: 487 -----RRT---ELMVGEVLSLEDEDLIEEADVLITLSNKGYIKRLNQAEFTAQKRGGRGV 538 Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLLSGRG 585 K+ D +K + T DR+L + G+ Y LP NLL Sbjct: 539 QGTGVKDDDFVKELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLK-LD 597 Query: 586 HGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK-GKTFLKV 644 GE IQ +I++ ++ ++++ +T +V + F AN R+ G L + Sbjct: 598 EGETIQTIINVQQDRSD-DSYLFFTTRHGVVKRTSVTEF--------ANIRQNGLKALNL 648 Query: 645 SSEEKMKLVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSR-GKGVRLQSYKDG 695 E+++ V G ++G + F+ + MSR GVR + +DG Sbjct: 649 KDEDELINVFLTDGAADVIIGTKFGYSVRFNETAVRSMSRIATGVRGVNLRDG 701 >gi|170681961|ref|YP_001744424.1| DNA gyrase subunit A [Escherichia coli SMS-3-5] gi|300903612|ref|ZP_07121530.1| DNA gyrase, A subunit [Escherichia coli MS 84-1] gi|300948925|ref|ZP_07162987.1| DNA gyrase, A subunit [Escherichia coli MS 116-1] gi|300958916|ref|ZP_07171019.1| DNA gyrase, A subunit [Escherichia coli MS 175-1] gi|301303309|ref|ZP_07209434.1| DNA gyrase, A subunit [Escherichia coli MS 124-1] gi|309793111|ref|ZP_07687539.1| DNA gyrase, A subunit [Escherichia coli MS 145-7] gi|170519679|gb|ACB17857.1| DNA gyrase, A subunit [Escherichia coli SMS-3-5] gi|300314419|gb|EFJ64203.1| DNA gyrase, A subunit [Escherichia coli MS 175-1] gi|300404348|gb|EFJ87886.1| DNA gyrase, A subunit [Escherichia coli MS 84-1] gi|300451621|gb|EFK15241.1| DNA gyrase, A subunit [Escherichia coli MS 116-1] gi|300841483|gb|EFK69243.1| DNA gyrase, A subunit [Escherichia coli MS 124-1] gi|308123397|gb|EFO60659.1| DNA gyrase, A subunit [Escherichia coli MS 145-7] gi|315255166|gb|EFU35134.1| DNA gyrase, A subunit [Escherichia coli MS 85-1] gi|324020903|gb|EGB90122.1| DNA gyrase, A subunit [Escherichia coli MS 117-3] Length = 875 Score = 414 bits (1063), Expect = e-113, Method: Compositional matrix adjust. Identities = 255/659 (38%), Positives = 381/659 (57%), Gaps = 65/659 (9%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + V++ L+ YL YA+S I RA+PD+RDG KPVHRR+++AM+ +G D+ A+KKSA Sbjct: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD +VY+++VR+AQPF RY L+ GQGNFG+IDGDSAAA RYTE R+ Sbjct: 68 RVVGDVIGKYHPHGDLAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 ++A ++ ++++ VDF D Y+ + P V P+K PNLL NG+SGIAVGMAT+IP HN+ Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ LA ID+ +ISIE L+E+I GPDFPT II R I E+YR GRG +RAR Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAII-NGRRGIEEAYRTGRGKVYIRARA 246 Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314 VE + G I+V EIPYQV K+RLIEKIAEL+ KR+ + +RDES +D +RIV+ Sbjct: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K ++ ++++ +++ + ++ F +NM L G+ P++M L I+ ++ HRREV+ R Sbjct: 307 VKRDAVG-EVVLNNLYSQTQLQVSFGINMVALHHGQ-PKIMNLKDIIAAFVRHRREVVTR 364 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----------- 420 R+ F ++ R IL+ L +A NID II +IR+ P K +V+ Sbjct: 365 RTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAML 424 Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457 + LTE Q AIL+LRL+ L LE ++ E LL + Sbjct: 425 ERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQ 484 Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517 ++ +L S + I E+ V+E F G +R T + AD + +I + Sbjct: 485 IAELLRILGSADRLMEVIREELELVREQF------GDKRRTEITANSADINL--EDLITQ 536 Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569 E + V +S++G+++ + + SA KE D + L A+T D IL S+ Sbjct: 537 EDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSR 596 Query: 570 GKAYTLPAGNLLSG-RG-HGEAIQLLIDLNHNQDIVTAFV----YDSTCKLLVVSSKGN 622 G+ Y++ L RG G I L+ L ++ I TA + ++ K+ + ++ G Sbjct: 597 GRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERI-TAILPVTEFEEGVKVFMATANGT 654 >gi|167461557|ref|ZP_02326646.1| DNA gyrase subunit A [Paenibacillus larvae subsp. larvae BRL-230010] Length = 790 Score = 414 bits (1063), Expect = e-113, Method: Compositional matrix adjust. Identities = 219/572 (38%), Positives = 363/572 (63%), Gaps = 22/572 (3%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 VK V + F + ++ YA+S I RA+PD+RDG KPVHRRI++AMSE+G+ KKSA Sbjct: 9 VKEVDIGFEMRNSFMDYAMSIIVSRALPDVRDGLKPVHRRILYAMSELGITPDKPHKKSA 68 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 RIVGEVIGK HPHGD +VY+++VR+AQ F RY L+ G GNFG+IDGD AAA RYTEAR+ Sbjct: 69 RIVGEVIGKYHPHGDAAVYETMVRMAQDFSLRYMLVDGHGNFGSIDGDMAAAMRYTEARL 128 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 +++A +L+ ++++ +D+ Y+ E+ EPVV P++FPNL+ NG+SGIAVGMAT+IP HN+ Sbjct: 129 SKIAMELLRDINKETIDYTPNYDGEEQEPVVLPARFPNLMVNGSSGIAVGMATNIPPHNL 188 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ + L LI+NP+++ +L+ I GPDFPTG I+ RE I ++Y GRG +RA+ Sbjct: 189 GEVIDGILMLIENPDVTPLELMSAIKGPDFPTGAYIL-GREGIRQAYSTGRGSVTMRAKT 247 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316 +EEV + I+V E+PYQV K+RLIEKIAEL+ K+I + D+RDES + ++ Sbjct: 248 TIEEVNNKAR-IIVDELPYQVNKARLIEKIAELVREKKIDGITDLRDESDRNGMRIVIEL 306 Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376 R ++P++++ ++F + +++ F + +N+ + P+V+ L +L +L H+R V+ RR+ Sbjct: 307 RRDVNPNVVLNNLFKHTALQSNFGI-INIALVNGEPKVLNLKEMLYYYLEHQRVVIRRRT 365 Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAILN 433 + ++ + R IL+GL IA ++DE+IA+IR+ D + ++ +F L+ +Q AIL+ Sbjct: 366 EYELRKAEARAHILEGLRIALDHLDEVIALIRSSRTTDIARTGLMEQFELSHDQAQAILD 425 Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493 +RL+ L LE +I++E L+A+ ++ ++L + I+ E+++++ + Sbjct: 426 MRLQRLTGLEREKIENEYKELMAKIAELKAILADEQLILKIISEELQQIRASYGDE---- 481 Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHF 545 RRT E++ + A + +I +E + + I++ G++ RS + + + Sbjct: 482 -RRT---EITIGEDAIEDEDLIPREEVVITITHSGYVKRLPVSTYRSQRRGGRGVVGMDT 537 Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPA 577 K D ++ ++ ++ + GK Y L A Sbjct: 538 KNNDFVEHLFVTNSHHYLMFFTDKGKVYRLKA 569 >gi|148255734|ref|YP_001240319.1| DNA gyrase subunit A [Bradyrhizobium sp. BTAi1] gi|146407907|gb|ABQ36413.1| DNA gyrase subunit A [Bradyrhizobium sp. BTAi1] Length = 915 Score = 414 bits (1063), Expect = e-113, Method: Compositional matrix adjust. Identities = 236/595 (39%), Positives = 336/595 (56%), Gaps = 47/595 (7%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 +++ VS+ ++ YL YA+S I RA+PD RDG KPVHRRI+++M E G + KS Sbjct: 17 DIRPVSILDEMKRSYLDYAMSVIVSRALPDARDGLKPVHRRILYSMYEQGHTPDKKYVKS 76 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 AR+VG+VIGK HPHGDQS+YD++VR+AQ F R PLI GQGNFG++DGD AAYRYTEA+ Sbjct: 77 ARVVGDVIGKYHPHGDQSIYDAMVRMAQDFSMRVPLIDGQGNFGSVDGDPPAAYRYTEAK 136 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 + + A +L +D+D VDF+ Y+ D EP V P+KFPNLL NG GIAVGMAT+IP HN Sbjct: 137 LAKSAIPLLDDIDKDTVDFQANYDNSDKEPSVLPAKFPNLLVNGAGGIAVGMATNIPPHN 196 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 + E+ +A +ALIDNP ISI++L + I GPDFPTGGII+ R I +Y LGRG +R + Sbjct: 197 LSEVIDACVALIDNPAISIDELTQIIPGPDFPTGGIIL-GRAGIRSAYHLGRGSIMMRGK 255 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315 ++ + + I+V+EIPYQV K+ ++E+IAEL+ K+I + D+RDES D V+ Sbjct: 256 VTIDTIRKDREAIIVSEIPYQVNKATMVERIAELVREKKIEGISDLRDESDRDGYRVVIE 315 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 R D+++ ++ + ++T F NM L GR PQ M L +L ++A R V+ RR Sbjct: 316 LKRDAVADVVLNQLYKFTPLQTSFAANMLALDGGR-PQTMTLKDLLTIFVAFRERVVTRR 374 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR------------ 420 + F + R IL GL +A NIDEII +IR P + ++SR Sbjct: 375 TKFLLNKARDRAHILVGLAVAVANIDEIIRVIRTSPNPTSARDALMSRDWPARDVEAIIT 434 Query: 421 --------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466 L+ Q AIL+LRL+ L L +I ELD L E +L Sbjct: 435 LIDDPRHRLAEDGTIRLSFEQAKAILDLRLQRLTALGREEISDELDKLKIEIADYLEILR 494 Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526 S + + I E+ VK F RRT E + + +I++E + V +S+ Sbjct: 495 SRARVQDIIKTELAAVKAEFGTP-----RRTAIIE---QEGEVEDEDLIQREDMVVTVSH 546 Query: 527 RGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573 G+ R+ + S + +E D + A T +L S+ G+ Y Sbjct: 547 AGYTKRVPLSAYRAQRRGGKGRSGMQTREEDFVSRLFVASTHTPVLFFSSRGQVY 601 >gi|170019456|ref|YP_001724410.1| DNA gyrase subunit A [Escherichia coli ATCC 8739] gi|169754384|gb|ACA77083.1| DNA gyrase, A subunit [Escherichia coli ATCC 8739] Length = 875 Score = 414 bits (1063), Expect = e-113, Method: Compositional matrix adjust. Identities = 255/659 (38%), Positives = 380/659 (57%), Gaps = 65/659 (9%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + V++ L+ YL YA+S I RA+PD+RDG KPVHRR+++AM+ +G D+ A+KKSA Sbjct: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG+IDGDSAAA RYTE R+ Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 ++A ++ ++++ VDF D Y+ + P V P+K PNLL NG+SGIAVGMAT+IP HN+ Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ LA ID+ +ISIE L+E+I GPDFPT II R I E+YR GRG +RAR Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAII-NGRRGIEEAYRTGRGKVYIRARA 246 Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314 VE + G I+V EIPYQV K+RLIEKIAEL+ KR+ + +RDES +D +RIV+ Sbjct: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K ++ ++++ +++ + ++ F +NM L G+ P++M L I+ ++ HRREV+ R Sbjct: 307 VKRDAVG-EVVLNNLYSQTQLQVSFGINMVALHHGQ-PKIMNLKDIIAAFVRHRREVVTR 364 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----------- 420 R+ F ++ R IL+ L +A NI II +IR+ P K +V+ Sbjct: 365 RTIFELRKARDRAHILEALAVALANIAPIIELIRHAPTPAEAKTALVANPWQLGNVAAML 424 Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457 + LTE Q AIL+LRL+ L LE ++ E LL + Sbjct: 425 ERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQ 484 Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517 ++ +L S + I E+ V+E F G +R T + AD + +I + Sbjct: 485 IAELLRILGSADRLMEVIREELELVREQF------GDKRRTEITANSADINL--EDLITQ 536 Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569 E + V +S++G+++ + + SA KE D + L A+T D IL S+ Sbjct: 537 EDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSR 596 Query: 570 GKAYTLPAGNLLSG-RG-HGEAIQLLIDLNHNQDIVTAFV----YDSTCKLLVVSSKGN 622 G+ Y++ L RG G I L+ L ++ I TA + ++ K+ + ++ G Sbjct: 597 GRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERI-TAILPVTEFEEGVKVFMATANGT 654 >gi|239831888|ref|ZP_04680217.1| DNA gyrase, A subunit [Ochrobactrum intermedium LMG 3301] gi|239824155|gb|EEQ95723.1| DNA gyrase, A subunit [Ochrobactrum intermedium LMG 3301] Length = 935 Score = 414 bits (1063), Expect = e-113, Method: Compositional matrix adjust. Identities = 254/694 (36%), Positives = 383/694 (55%), Gaps = 61/694 (8%) Query: 2 GVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61 G D+++ ++ +S+ ++ YL YA+S I RA+PD+RDG KPVHRRI+HAM Sbjct: 9 GSDDMNGGPNGGPSGIEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAM 68 Query: 62 SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121 +EM L + ++KSA +VGEV+GK HPHGD S+YD+LVR+AQ F R PL+ GQGNFG+I Sbjct: 69 NEMNLAYNRPYRKSAGVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLVDGQGNFGSI 128 Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181 DGD AA RYTE R+ +++E IL +D+D VDF+D Y+ + EPVV P++FPNLL NG+ Sbjct: 129 DGDPPAAMRYTECRLEKLSESILSDIDKDTVDFQDNYDGREQEPVVMPARFPNLLVNGSG 188 Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241 GIAVGMAT+IP HN+ E+ + +ALIDNP I + +L+E I GPDFPTGGII+ R I Sbjct: 189 GIAVGMATNIPPHNLGEVIDGCVALIDNPAIELSELMEIIPGPDFPTGGIIL-GRSGINS 247 Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301 +Y GRG +R R +E + I++TEIPYQV K+ +IEK+AEL+ KRI + D+ Sbjct: 248 AYTTGRGSVVMRGRATIEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKRIEGISDL 307 Query: 302 RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361 RDES + V+ R D+++ ++ + ++T F NM L+ G+ Q+ LD +L Sbjct: 308 RDESDREGYRVVVELKRDAVADVVLNQLYRYTPLQTSFGCNMVALNGGKPEQLNLLD-ML 366 Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP----KPVM 417 + ++ R EV+ RR+ F + R +L GL IA NIDE+IA+IR P + +M Sbjct: 367 RAFVVFREEVVTRRTKFLLNKARDRAHVLVGLAIAVANIDEVIALIRRAPDPTTAREQLM 426 Query: 418 VSR-------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELD 452 R ++L+E Q AIL+LRL+ L L ++ EL+ Sbjct: 427 ERRWPAADVAPLIRLIDDPRHTINEDNTYNLSEEQARAILDLRLQRLTALGRDEVADELN 486 Query: 453 NLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ 512 + E +L S + + E+ V++ F+ RRT E+ + Sbjct: 487 KIGEEIRDYLDILGSRLRVMTIVKEEMIAVRDEFATP-----RRT---EIGFGGAEMDDE 538 Query: 513 AMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRIL 564 +I +E + V +S+ G+I R+ + S + K+ D + A+T +L Sbjct: 539 DLIAREDMVVTVSHAGYIKRVPLTTYRAQRRGGKGRSGMATKDEDFVTRLFVANTHTPVL 598 Query: 565 LLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY----DSTCKLL 615 S+ G K + LP G S G+A+ ++ L + I T DS L Sbjct: 599 FFSSRGIVYKEKVWRLPVGTPQS---RGKALINMLPLQQGERITTIMPLPEDEDSWANLD 655 Query: 616 VV--SSKGNAFIVEESEIIANTRKGKTFLKVSSE 647 V+ +++G + S+ + R GK +K+ E Sbjct: 656 VMFSTTRGTVRRNKLSDFVQVNRNGKIAMKLEDE 689 >gi|304439073|ref|ZP_07398992.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Peptoniphilus duerdenii ATCC BAA-1640] gi|304372432|gb|EFM26019.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Peptoniphilus duerdenii ATCC BAA-1640] Length = 810 Score = 413 bits (1062), Expect = e-113, Method: Compositional matrix adjust. Identities = 271/766 (35%), Positives = 435/766 (56%), Gaps = 45/766 (5%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 E + V + + YL Y++S I RA+PD+RDG KPVHRRI++ M +G+ +++ Sbjct: 7 ENGIIDVDISKKMRSSYLDYSMSVIVSRALPDVRDGLKPVHRRIVYGMQTLGITPDKSYR 66 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSA +VGEV+GK HPHGD S+YD+ RLAQ F RY L+ GQGNFGN+DGDS AA RYTE Sbjct: 67 KSATLVGEVMGKFHPHGDSSIYDAAARLAQDFNIRYTLVDGQGNFGNVDGDSPAAPRYTE 126 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 RM+++A+ +L+ +++D VDF Y+E + EP V PS+FPN+L NG++GIAVGMAT++ Sbjct: 127 MRMSKIAQEMLRDINKDTVDFVPNYDEREVEPSVLPSRFPNILVNGSAGIAVGMATNMAP 186 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E A + I+N +I IE+L++ I GPDFPTG II+ ++ I+++Y+ GRG +VR Sbjct: 187 HNLGESISAVIDYINNEDIEIEELMKSIKGPDFPTGAIIL-GKQGIIDAYKTGRGKIQVR 245 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313 AR +EE +G + IV+TEIPYQV K+ LI KIA+L+ K I + +IRD S+ I + Sbjct: 246 ARAEIEE-HKGRYKIVITEIPYQVNKTNLIVKIADLVKNKSIEGISNIRDLSSHKTGIKI 304 Query: 314 -FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 R +P++++ +++ + M+ F + +N+ + P+V+ L I+K ++ H+R V+ Sbjct: 305 DIDLKRDANPNVVLNNLYKNTQMQITFGI-INLCLVNGEPKVLNLKEIIKYYVDHQRNVV 363 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVD 429 RR+ F ++ + R I++GL IA NID II I+R ++ + K F LT+ Q Sbjct: 364 RRRTQFDLEKAEARAHIIEGLKIALDNIDRIIKIVRESSDDQEAKNKFTKEFGLTDIQGQ 423 Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489 AIL++R+R L LE +++ E +L+ K+ S+L + K N I E+ E+KE +S Sbjct: 424 AILDMRIRRLTGLEREKLEQEYQDLIKLIAKLKSILENKKLLDNTIIEELEEIKEKYS-- 481 Query: 490 TDLGRRRTTFCEVSRADKATL-QQAMIEKEPITVVISNRGWIRSL--------KSHSVDL 540 DL RRT D+ + + +IE+E + + ++ G+I+ + + + Sbjct: 482 -DL--RRTVLA----PDEGDIDSEDLIEEEDVVITLTEFGYIKRMPEGTYKPQRRGGTGI 534 Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNH 598 SAL +E D +K T D IL + G+ Y+L A + S + G AI L++L Sbjct: 535 SALTTREEDFVKDIYITSTHDTILFFTNFGRVYSLKAYEIPESSRQAKGTAIINLLNLEG 594 Query: 599 NQDIVTAFV----YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654 ++ VTA + D L++ + G SE + G + ++ + + V Sbjct: 595 DE-FVTAVIPVRNVDENANLVMATKNGLIKKTSYSEFEKIRKNGLIAITLNEGDNLIGVR 653 Query: 655 KVTG-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712 +G D + +V +N + FS + M R GV+ K+ +V+ F+I + ++ Sbjct: 654 LTSGRDEIMIVTKNGMAIRFSESDVRNMGRTAMGVKSIDLKND--DEVVSFEIPQDDKYL 711 Query: 713 -----DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753 + G+ +E R GVG L K +SGK +S+ Sbjct: 712 LVISENGFGKMTKMTEY----RKQNRAGVGLLTYKATEKSGKLVSA 753 >gi|309800473|ref|ZP_07694628.1| DNA gyrase, A subunit [Streptococcus infantis SK1302] gi|308115892|gb|EFO53413.1| DNA gyrase, A subunit [Streptococcus infantis SK1302] Length = 586 Score = 413 bits (1062), Expect = e-113, Method: Compositional matrix adjust. Identities = 228/575 (39%), Positives = 359/575 (62%), Gaps = 24/575 (4%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 ++N+ V+L ++ ++ YA+S I RA+PD+RDG KPVHRRI++ M+E+G+ K Sbjct: 3 DKNLVNVNLTKEMKTSFIDYAMSVIVSRALPDVRDGLKPVHRRILYGMNELGVTPDKPHK 62 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSARI G+V+GK HPHGD S+Y+++VR+AQ + RY L+ G GNFG++DGD AAA RYTE Sbjct: 63 KSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYTE 122 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 ARM+++A +L+ ++++ VDF D Y+ + EPVV P++FPNLL NG +GIAVGMAT+IP Sbjct: 123 ARMSKIALEMLRDINKNTVDFVDNYDANEREPVVLPARFPNLLVNGATGIAVGMATNIPP 182 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E +A ++DNPE++ ++L+E + GPDFPTG +++ + I ++Y G+G +R Sbjct: 183 HNLGETIDAVKLVMDNPEVTTKELMEVLPGPDFPTGALVM-GKSGIHKAYETGKGSIVLR 241 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312 +R +EE G IVVTE PY V K+++ E I L+ KRI + +RDES E VR V Sbjct: 242 SRTEIEETKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 + K R ++++ ++F ++ M+T F NM + G VP+++ L IL ++ H++EV+ Sbjct: 302 IEVK-RDASANVILNNLFKMTQMQTSFGFNMLAIQNG-VPKILSLRQILDAYIEHQKEVV 359 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVD 429 RR+ F + + R IL+GLLIA +IDE+I IIR +++ + ++S+F L+E Q Sbjct: 360 TRRTQFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDEEAQAELMSKFKLSERQSQ 419 Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489 AIL++RLR L LE +I+SE D L+A + +L ++ I E+ EVK F Sbjct: 420 AILDMRLRRLTGLERDKIQSEYDELIALIADLADILAKPERVAQIIKEELDEVKRKFGDP 479 Query: 490 TDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSL--------KSHSVDL 540 RRT E+ + TL+ + +IE+ + + +SN+G+I+ L K + Sbjct: 480 -----RRT---ELMVGEVLTLEDEDLIEESDVLITLSNKGYIKRLDQDEFTAQKRGGRGV 531 Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575 K+ D ++ + T D +L + G+ Y L Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRL 566 >gi|118445174|ref|YP_879292.1| DNA gyrase subunit A [Clostridium novyi NT] gi|118135630|gb|ABK62674.1| DNA gyrase, A subunit [Clostridium novyi NT] Length = 843 Score = 413 bits (1062), Expect = e-113, Method: Compositional matrix adjust. Identities = 233/577 (40%), Positives = 358/577 (62%), Gaps = 24/577 (4%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 E N+ V + ++ Y+ YA+S I RA+PD+RDG KPVHRRI+++M E+GL ++ Sbjct: 4 EGNIIPVDISKEMQRSYIDYAMSVIVGRALPDVRDGLKPVHRRILYSMHELGLTPEKGYR 63 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSARIVG+V+GK HPHGD +VYD+LVR+AQ F RY L+ G GNFG++DGD AAA RYTE Sbjct: 64 KSARIVGDVLGKYHPHGDTAVYDALVRMAQDFSIRYTLVDGHGNFGSVDGDGAAAMRYTE 123 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 A+MT+V +L+ ++++ VDF ++ E+ EP V PS+FPNLL NG+SGIAVGMAT+IP Sbjct: 124 AKMTKVTLELLRDINKNTVDFIPNFDGEEKEPSVLPSRFPNLLVNGSSGIAVGMATNIPP 183 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E+ IDNP+IS+ +L+ I GPDFPT GIIV + I +Y GRG +R Sbjct: 184 HNLTEVINGISKYIDNPDISVAELMAEIKGPDFPTAGIIV-GKSGIKRAYETGRGKVVIR 242 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIV 312 ++ +EE +G IVVTEIPYQV K+RLIE IA L+ KRI + D+RDES + +RIV Sbjct: 243 SKAEIEEDEKGKSRIVVTEIPYQVNKARLIESIANLVKDKRINGISDLRDESDRQGMRIV 302 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 + K R + ++++ ++ + M+ F + M L G P+V+ L +LK ++ + EV+ Sbjct: 303 IELK-RDANANVVLNQLYKHTKMQDSFGIIMLALVNGE-PRVLSLKEVLKHYIKFQEEVI 360 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVD 429 RR+ F + R IL+GL IA +IDE+I +IR+ + + ++S+F+L+E Q + Sbjct: 361 TRRTQFDLDKALARAHILEGLRIALDHIDEVIKLIRSSKTTAEAREGLMSKFNLSEKQAN 420 Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489 AIL+++L+ L LE +I+ E L+ + +L++ I E+ E+K + Sbjct: 421 AILDMKLQRLTGLEREKIEEEYAKLMESIKYFREILSNKDLLLKIIKDELNEIKIKYGDE 480 Query: 490 TDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSL--KSHSVD------L 540 RRT E+ D + + +IE++ + + +++ G+I+ L +++S + Sbjct: 481 -----RRT---EIVHGDGNDIDIEDLIEEKDVVITLTHAGYIKRLPVETYSAQRRGGRGI 532 Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPA 577 A+ KE D ++ + + T D IL S G+ Y L A Sbjct: 533 QAMTTKEDDFVEHIITSSTHDNILFFSNRGRVYKLKA 569 >gi|332980612|ref|YP_004462053.1| DNA gyrase subunit A [Mahella australiensis 50-1 BON] gi|332698290|gb|AEE95231.1| DNA gyrase subunit A [Mahella australiensis 50-1 BON] Length = 809 Score = 413 bits (1062), Expect = e-113, Method: Compositional matrix adjust. Identities = 233/605 (38%), Positives = 381/605 (62%), Gaps = 27/605 (4%) Query: 14 EENVKA--VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71 EE K V+L ++ Y+ YA+S I RA+PD+RDG KPVHRRI++AM+E+GL Sbjct: 4 EEQTKVIEVNLEEEMKHSYIDYAMSVIVGRALPDVRDGLKPVHRRILYAMNELGLMPDKP 63 Query: 72 FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131 ++KSARIVG+V+GK HPHG+ +VYDS+VR+AQ F RYPL+ G GNFG+ID D AA RY Sbjct: 64 YRKSARIVGDVLGKYHPHGEAAVYDSMVRMAQDFSMRYPLVDGHGNFGSIDNDPPAAMRY 123 Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191 TEAR++++A +L +D++ VDF ++E EPVV PS+FPNLL NG++GIAVGMAT+I Sbjct: 124 TEARLSRLAMEMLTDIDKETVDFIPNFDETLKEPVVLPSRFPNLLVNGSAGIAVGMATNI 183 Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251 P HN++E +AA+ +ID+P+ISI++L++ + GPDFPTGGII+ R+ I ++Y GRG + Sbjct: 184 PPHNLKETIDAAIKVIDDPDISIDELMKTLKGPDFPTGGIIM-GRDGIKQAYHTGRGRIK 242 Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVR 310 VR + +E + G I+VTEIPYQV K+ L+ +IA L+ K+I + DIRDES E +R Sbjct: 243 VRGKTSIEPLPGGRSRIIVTEIPYQVTKADLVVQIANLVKDKKIDGIADIRDESDKEGMR 302 Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370 I + K R ++P++++ ++ + +E F + M L + P+V+ + + ++ H+++ Sbjct: 303 IAIDLK-RDVNPNVVLNLLYKHTRLEDTFGIIMLAL-VDNQPKVLNIKQMFYYYIDHQKD 360 Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLTENQ 427 V+ RRS + ++ + R IL+GL IA +ID I+A+IR+ + K ++S+F+L++ Q Sbjct: 361 VIVRRSRYDLEKAEARAHILEGLRIALDHIDAIVALIRSSKTDQIAKEALMSQFNLSDKQ 420 Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487 AIL++RLR L LE +I+ E L++ E + +L+ + I E++ ++ + Sbjct: 421 AQAILDMRLRRLTGLERDKIEEEYAQLMSTIEYLRRVLSDEGMVYKIIKDELKTIRNKYG 480 Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD-------- 539 RRT S+AD+ ++ +I+ E + + +++ G+I+ L + Sbjct: 481 DD-----RRTQIS--SKADEMEIED-LIQDEEVAITLTHFGYIKRLPLDTYKSQRRGGKG 532 Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEAIQLLIDLN 597 ++ + ++ D ++ T +L + GK Y + A ++ +GR G AI L++L+ Sbjct: 533 ITGMQTRDEDFVEHIFVTSTHSYMLFFTNKGKVYMMRAYDVPEAGRQAKGTAIINLLNLS 592 Query: 598 HNQDI 602 + I Sbjct: 593 GGEKI 597 >gi|296273761|ref|YP_003656392.1| DNA gyrase subunit A [Arcobacter nitrofigilis DSM 7299] gi|296097935|gb|ADG93885.1| DNA gyrase, A subunit [Arcobacter nitrofigilis DSM 7299] Length = 856 Score = 413 bits (1062), Expect = e-113, Method: Compositional matrix adjust. Identities = 237/615 (38%), Positives = 374/615 (60%), Gaps = 40/615 (6%) Query: 10 NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69 N +++ +++ +++ YL Y++S I RA+PD +DG KPVHRRI+ AM ++ + Sbjct: 3 NLFENQDIIDINIEDSVKSSYLDYSMSVIIGRALPDAKDGLKPVHRRILFAMHDLNMSAR 62 Query: 70 AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129 A +KKSARIVG+VIGK HPHGD SVYD+LVR+AQ F R PLI GQGNFG++DGDSAAA Sbjct: 63 APYKKSARIVGDVIGKYHPHGDTSVYDALVRMAQSFSMREPLIDGQGNFGSVDGDSAAAM 122 Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189 RYTE+R T+++E IL+ +D+D V+F Y++ EP V P++ P LL NG+ GIAVGMAT Sbjct: 123 RYTESRFTKISEDILKDIDKDTVNFTANYDDTLKEPSVLPTRVPTLLMNGSEGIAVGMAT 182 Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249 IP HN+ E+ +A + ++DNPE + ++L+E+I GPDFPTGG I R I+++Y GRG Sbjct: 183 KIPPHNLNELLDATMHILDNPEATADELMEFIQGPDFPTGGTIF-GRRGIIDAYNTGRGR 241 Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED- 308 R+RA+ +E G+ IV+ E+PYQV K+RLIE IA L K+I + ++RDES D Sbjct: 242 VRIRAKHHIETRGK-KEIIVLDELPYQVNKARLIELIANLTKDKQIEGISEVRDESDRDG 300 Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368 +R+V+ K ++ +++M +++ + MET F + + + + P+V L +L +++HR Sbjct: 301 IRVVIELKKDAM-SEIVMNNLYKSTPMETTFGIIL-LAVYNKEPKVFTLPELLNVFISHR 358 Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTE 425 + V+ RR+ F ++ R IL+GL IA NIDE++ IIR N+ K + RF L+ Sbjct: 359 KTVIIRRTIFDLEKAKARAHILEGLKIALDNIDEVVKIIRASANDSDAKEKLELRFGLSP 418 Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485 Q AIL++RL L L+ ++++E L+A +++S+L S ++ I E+ E++E Sbjct: 419 IQSQAILDMRLGRLTGLQRDKLEAEYQELMAIIAELESILKSEEKLVEIIKEELSEIREK 478 Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545 +S S L ++ E+ D +I EP+ V I++ G+++ + S + Sbjct: 479 YS-SKRLTDIEDSYDEIDIED-------LIPNEPMVVTITHNGYVKRVPIKSYEKQ---- 526 Query: 546 KEGDSLKIALHAH------------TTDRILLLSTDG-----KAYTLPAGNLLSGRGHGE 588 + G K+A+ H T D ++ ++ G K Y +P G S G+ Sbjct: 527 RRGGKGKVAVTTHDDDFIERFFVTNTHDTLMFVTNMGQLYWLKVYRIPEG---SRTAKGK 583 Query: 589 AIQLLIDLNHNQDIV 603 A+ LI+L ++ I+ Sbjct: 584 AVVNLINLRPDEKIM 598 >gi|289422510|ref|ZP_06424353.1| DNA gyrase, A subunit [Peptostreptococcus anaerobius 653-L] gi|289157082|gb|EFD05704.1| DNA gyrase, A subunit [Peptostreptococcus anaerobius 653-L] Length = 815 Score = 413 bits (1062), Expect = e-113, Method: Compositional matrix adjust. Identities = 230/599 (38%), Positives = 373/599 (62%), Gaps = 25/599 (4%) Query: 26 LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85 + + Y+ Y++S I RA+PD+RDG KPVHRRI+++M E G+ ++KSARIVG+V+GK Sbjct: 16 MRKSYIDYSMSVIVGRALPDVRDGLKPVHRRILYSMMEQGITPDKPYRKSARIVGDVLGK 75 Query: 86 LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145 HPHGD SVY ++V++AQ F R L+ GQGNFG++DGDS AA RYTEARM+++A +L+ Sbjct: 76 YHPHGDSSVYMAMVKMAQDFSTRGLLVDGQGNFGSVDGDSPAAMRYTEARMSKLALELLR 135 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 ++++ VDF ++E EP+V P+++PNLL NG++GIAVGMATSIP HN+ E+ +A + Sbjct: 136 DIEKETVDFGPNFDESLEEPIVLPARYPNLLVNGSNGIAVGMATSIPPHNLGEVIDATVH 195 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265 IDN + +++LL+Y+ GPDFPT IV + I ++Y+ GRG +VRA+ +EE+ +G Sbjct: 196 YIDNQDCDVDELLDYVKGPDFPTAATIV-GYDGIKQAYKTGRGKVKVRAKAEIEELPKGK 254 Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLFPKNRSLDPDL 324 IVVTEIPYQV K+RL+EKIA+L+ K++ + D+RDE+ E +RIV+ K R + ++ Sbjct: 255 QQIVVTEIPYQVNKARLVEKIADLVKEKKVEGISDLRDETNREGMRIVIELK-RDTNANI 313 Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384 ++ +++ S +E F + M + G P+++ L +L +L H+++V+ RR+ F ++ Sbjct: 314 VLNNLYKHSQLEDTFSIIMLAIVDG-TPKILNLKQVLGYYLDHQKDVITRRTQFELRKAH 372 Query: 385 RRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAILNLRLRSLRK 441 R IL+GL IA NID +I+IIR+ K ++ F+L+E Q AIL++RL+ L Sbjct: 373 ARAHILEGLKIALDNIDRVISIIRSSKTGQIAKDRLIEEFALSEIQAQAILDMRLQRLTG 432 Query: 442 LEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCE 501 LE +I E +L+A E ++S+L + I E+ +K +K D RRT + Sbjct: 433 LEREKIDKEYKDLMARIEYLESILADELKLLGVIKEEMLAIK---AKHED--PRRT---Q 484 Query: 502 VSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD--------LSALHFKEGDSLKI 553 + A+ + + E+E + + +++ G+I+ L + + ++AL +E D ++ Sbjct: 485 IIPAEGEFDVKDLFEEEDVAITLTHLGYIKRLPADTYKSQKRGGRGIAALTTREEDFVRE 544 Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFVYDS 610 + T IL + G+ Y L A + G+ G AI L+ LN + + ++S Sbjct: 545 LISTTTYSTILFFTNRGRVYKLNAYEVPEGKRTSKGTAIVNLLQLNPGEKVARTITFNS 603 >gi|325915462|ref|ZP_08177776.1| DNA gyrase subunit A [Xanthomonas vesicatoria ATCC 35937] gi|325538344|gb|EGD10026.1| DNA gyrase subunit A [Xanthomonas vesicatoria ATCC 35937] Length = 902 Score = 413 bits (1062), Expect = e-113, Method: Compositional matrix adjust. Identities = 262/721 (36%), Positives = 383/721 (53%), Gaps = 62/721 (8%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 V+L + + YL YA+S I RA+PD RDG KPVHRR++ AM E+G A+ KSARIV Sbjct: 11 VNLEDEMRKSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHELGAHSNKAYFKSARIV 70 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGDQSVYD+LVR+AQPF RY ++ GQGNFG++DGDSAAA RYTE+RM+++ Sbjct: 71 GDVIGKYHPHGDQSVYDTLVRMAQPFSLRYMMVDGQGNFGSVDGDSAAAMRYTESRMSRL 130 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A ++ +D++ VDF+ Y+E++ EP V P++FP+LL NG++GIAVGMAT+IP HN+ E Sbjct: 131 AHELMADIDKETVDFQPNYDEKELEPTVMPTRFPSLLVNGSAGIAVGMATNIPPHNLTEA 190 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 A +ALID PE+ +E L+EYI GPDFPT GII I YR GRG R+RA+ VE Sbjct: 191 INACIALIDTPELDVEGLMEYIPGPDFPTAGII-NGTAGIAAGYRTGRGRVRIRAKADVE 249 Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319 G IVVTEIPYQV K+RLIEKIAEL+ K++ + ++RDES +D + R Sbjct: 250 VADNGREAIVVTEIPYQVNKARLIEKIAELVKEKKLEGISELRDESDKDGMRIYIEIKRG 309 Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379 ++++ +++ + ME+ F +NM L GR PQ+M L +L+ ++ HRREV+ RR+ + Sbjct: 310 ESAEVVLNNLYQQTQMESVFGINMVALIDGR-PQLMNLKQMLEAFIRHRREVVTRRTIYE 368 Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSR---------------- 420 ++ R +L+GL +A NIDE+I +I+ P+ M+++ Sbjct: 369 LRKARARAHVLEGLTVALANIDEMIELIKTSANPQEARERMLAKTWEPGLVGALLGAAGA 428 Query: 421 ------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKID 462 + L+E Q IL +RL L LE+ ++ E LL + + Sbjct: 429 EASKPEDLAPGVGLANGFYQLSEVQASQILEMRLHRLTGLEQEKLTDEYKQLLEVIQGLI 488 Query: 463 SLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITV 522 +L + I E+ ++E + G R T S D L +I E + V Sbjct: 489 RILENPDVLLQVIRDELINIREEY------GDERRTEIRHSEEDLDILD--LIAPEDVVV 540 Query: 523 VISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT 574 +S+ G+ + + + SA KE D + +T D +L ++ GK + Sbjct: 541 TLSHAGYAKRQPVSAYRAQRRGGRGRSAAATKEEDFIDQLWLVNTHDTLLTFTSSGKVFW 600 Query: 575 LPAGNL--LSGRGHGEAIQLLIDLNHN---QDIVTAFVYDSTCKLLVVSSKGNAFIVEES 629 LP L G I I L Q ++ Y + + G S Sbjct: 601 LPVHQLPEAGSNARGRPIINWIPLESGERVQAVLPVREYADNRYVFFATRNGTVKKTPLS 660 Query: 630 EIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR-GKGV 687 E +GK + + + + V GD V + N K + F + M R GV Sbjct: 661 EFAFRLARGKIAINLDDGDALVGVALTDGDRDVLLFASNGKTVRFGESTVRSMGRTATGV 720 Query: 688 R 688 R Sbjct: 721 R 721 >gi|332162346|ref|YP_004298923.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325666576|gb|ADZ43220.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica 105.5R(r)] Length = 885 Score = 413 bits (1062), Expect = e-113, Method: Compositional matrix adjust. Identities = 252/635 (39%), Positives = 371/635 (58%), Gaps = 60/635 (9%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + V++ L+ YL YA+S I RA+PD+RDG KPVHRR+++AM+ +G D+ +KKSA Sbjct: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKPYKKSA 67 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG++DGDSAAA RYTE RM Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRM 127 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 +++A +L +++D VDF Y+ + P V P+K PNLL NG+SGIAVGMAT+IP HN+ Sbjct: 128 SKIAHELLADLEKDTVDFVPNYDGTEQIPAVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ + LA I++ I+IE L+EYI GPDFPT II R I E+YR GRG +RAR Sbjct: 188 SEVIDGCLAYIEDENITIEGLMEYIPGPDFPTAAII-NGRRGIEEAYRTGRGKVYIRARA 246 Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314 VE + G I+V EIPYQV K+RLIEKIAEL+ KR+ + +RDES +D +RIV+ Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K ++ ++++ +++ L+ ++ F +NM LS G+ P+++ L IL ++ HRREV+ R Sbjct: 307 IKRDAVG-EVVLNNLYSLTQLQVTFGINMVALSQGQ-PKLLNLKDILVAFVRHRREVVTR 364 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK----------------PVMV 418 R+ F ++ R IL+ L IA NID II +IR P M+ Sbjct: 365 RTIFELRKARDRAHILEALAIALANIDPIIELIRRAATPAEAKAGLIASPWELGNVAAML 424 Query: 419 SR---------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457 R + LTE Q AIL+LRL+ L LE ++ E LL Sbjct: 425 ERAGGDAARPEWLEAEFGIRDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLTV 484 Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517 ++ +L + ++ I E+ +KE+++ + RRT E++ + +I + Sbjct: 485 IAELIFILENPERLMEVIREELVAIKELYNDA-----RRT---EITANTSDINIEDLINQ 536 Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569 E + V +S++G+++ + + SA KE D + L A+T D IL S+ Sbjct: 537 EDVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSR 596 Query: 570 GKAYTLPAGNLL-SGRG-HGEAIQLLIDLNHNQDI 602 G+ Y + L + RG G I L+ L N+ I Sbjct: 597 GRLYWMKVYQLPEASRGARGRPIVNLLPLEPNERI 631 >gi|119358427|ref|YP_913071.1| DNA gyrase subunit A [Chlorobium phaeobacteroides DSM 266] gi|119355776|gb|ABL66647.1| DNA gyrase subunit A [Chlorobium phaeobacteroides DSM 266] Length = 827 Score = 413 bits (1062), Expect = e-113, Method: Compositional matrix adjust. Identities = 264/764 (34%), Positives = 413/764 (54%), Gaps = 45/764 (5%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 E + +S+ + + YL Y++S I RA+PD+RDG KPVHRR+++ M E+GL G KK Sbjct: 4 ERILPISIEEEMRDSYLDYSMSVIVSRALPDVRDGLKPVHRRVLYGMHELGLQAGKPHKK 63 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 SARIVGEV+GK HPHGD +VYDSLVRL Q F RYPLI GQGNFG+IDGDS AA RYTE Sbjct: 64 SARIVGEVLGKFHPHGDTAVYDSLVRLVQDFSMRYPLIDGQGNFGSIDGDSPAAMRYTEV 123 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 RM +A +L+ +D++ VDF +++ EP V PS PNLL NG+SGIAVGMAT+IP Sbjct: 124 RMKAIAGEMLKDLDKETVDFSLNFDDSLEEPTVLPSAIPNLLVNGSSGIAVGMATNIPPQ 183 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 N++E+ + +ALI+NP+I I L++++I PDFPT GII E + ++Y GRG +RA Sbjct: 184 NLREVVDGIIALIENPDIEIADLMKHVIAPDFPTAGIIY-GYEGVKQAYLTGRGKVVIRA 242 Query: 255 RWCVEEVGR-GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313 R VE + G I+VTE+PYQV K RLIEKI EL+ K++ + DIRDES D ++ Sbjct: 243 RALVEVTQKNGRESIIVTELPYQVNKVRLIEKIVELVHDKKLEGIADIRDESDRDGMRLV 302 Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373 R +++ +++ + M+ F + M L G +P+V+ L +++ ++ HR E++ Sbjct: 303 IELKRDAVAKVVLNNLYKHTPMQDTFGVIMLALVDG-MPRVLNLKQMMEYYIRHRNEIVL 361 Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE-DKP--KPVMVSRFSLTENQVDA 430 RR+ + + A ++R IL+GL I N+DE+I IR D P + ++ +F LTE Q A Sbjct: 362 RRTQYDLTAAEKRAHILEGLKICLDNLDEVITTIRQSPDAPTAQSSLMEKFGLTEIQSKA 421 Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490 IL +RL+ L +E +I E L +++ S+L + ++Q I E+ +VK+++ + Sbjct: 422 ILEMRLQRLTGMERKKIDMEYQETLLLIDELRSILANPQKQMQIIREELLKVKDVYGDA- 480 Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DLSA 542 RRT E+ + + MI +E + + I++ G+I+ ++ Sbjct: 481 ----RRT---EIVPQEGDFSIEDMIAQEDVVITITHDGFIKRFPVSGYRRQARGGKGVAG 533 Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLP-AGNLLSGRGHGEAIQLLIDL 596 K D ++ A T + IL +T G K Y +P AG GR ++L Sbjct: 534 AQAKHDDFVEHMFIASTHNYILFFTTRGRCYWLKVYEIPEAGRTARGRSLANIMEL---- 589 Query: 597 NHNQDIVTAFV----YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652 + + A++ +D +++ + G E R G + + +++ Sbjct: 590 -QPAEKIRAYINIRNFDEPGFIVMATGNGTVKKTGLDEFSRPRRNGIAAITIEENDELID 648 Query: 653 VVKVTGDHVAVVGENRKLLI-FSIDQIPEMSRG----KGVRLQSYKDGGISDVICFKICE 707 GDH ++ ++ ++ F +I M R +G+ L + + IS V + Sbjct: 649 ARLTDGDHQIILAKSSGYVVRFPESEIRSMGRTAMGVRGITLDA-DEKCISMVTTKRFDT 707 Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751 L + G D L KRG G + K ++G + Sbjct: 708 TLLAVTDNGFGKRSRVEDY--RLTKRGARGVITLKAHEKTGAMV 749 >gi|256255073|ref|ZP_05460609.1| DNA gyrase subunit A [Brucella ceti B1/94] Length = 934 Score = 413 bits (1062), Expect = e-113, Method: Compositional matrix adjust. Identities = 256/694 (36%), Positives = 383/694 (55%), Gaps = 61/694 (8%) Query: 2 GVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61 G D+++ ++ +S+ ++ YL YA+S I RA+PD+RDG KPVHRRI+HAM Sbjct: 9 GSDDMNGGPNGGPSGIEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAM 68 Query: 62 SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121 +EM L + ++KSA +VGEV+GK HPHGD S+YD+LVR+AQ F R PLI GQGNFG+I Sbjct: 69 NEMNLAYNRPYRKSAGVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLIDGQGNFGSI 128 Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181 DGD AA RYTE R+ +V E +L +D+D V+F+D Y+ + EPVV P++FPNLL NG+ Sbjct: 129 DGDPPAAMRYTECRLEKVTESLLSDIDKDTVNFQDNYDGREQEPVVLPARFPNLLVNGSG 188 Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241 GIAVGMAT+I HN+ E+ + +ALIDNP I + +L+E I GPDFPTGGII+ R I Sbjct: 189 GIAVGMATNILPHNLGEVIDGCVALIDNPAIELSELMELIPGPDFPTGGIIL-GRNGINS 247 Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301 +Y GRG +R R +E + I++TEIPYQV K+ +IEK+AEL+ KRI + D+ Sbjct: 248 AYTTGRGSVIMRGRATIEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKRIDGISDL 307 Query: 302 RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361 RDES + V+ R D+++ ++ + ++T F NM L+ G+ Q+ LD +L Sbjct: 308 RDESDREGYRVVVELKRDAVADVVLNQLYRYTPLQTSFGCNMVALNGGKPEQLTLLD-ML 366 Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP----KPVM 417 + ++A R EV+ RR+ F + R +L GL IA NIDE+IA+IR P + +M Sbjct: 367 RAFVAFREEVVTRRTKFLLNKARDRAHVLVGLAIAVANIDEVIALIRRAPDPATAREQLM 426 Query: 418 VSR-------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELD 452 R ++L+E Q AIL+LRL+ L L ++ EL+ Sbjct: 427 ERRWPAVDVAPLIRLIDDPRHTLNEDNTYNLSEEQARAILDLRLQRLTALGRDEVADELN 486 Query: 453 NLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ 512 + E +L S + N + E+ V++ F+ RRT E+ + Sbjct: 487 KIGEEIRDYLDILGSRLRVMNIVKEEMIAVRDEFATP-----RRT---EIGFGGAEMDDE 538 Query: 513 AMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRIL 564 +I +E + V +S+ G+I R+ + S + KE D + A+T +L Sbjct: 539 DLIAREDMVVTVSHAGYIKRVPLTTYRAQRRGGKGRSGMATKEEDFVTRLFVANTHTPVL 598 Query: 565 LLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY----DSTCKLL 615 S+ G K + LP G S G+A+ ++ L + I T DS L Sbjct: 599 FFSSRGIVYKEKVWRLPVGTPQS---RGKALINMLPLQQGERITTIMPLPEDEDSWANLD 655 Query: 616 VV--SSKGNAFIVEESEIIANTRKGKTFLKVSSE 647 V+ +++G + S+ + R GK +K+ E Sbjct: 656 VMFSTTRGTVRRNKLSDFVQVNRNGKIAMKLEDE 689 >gi|306821824|ref|ZP_07455416.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304550131|gb|EFM38130.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 812 Score = 413 bits (1062), Expect = e-113, Method: Compositional matrix adjust. Identities = 238/649 (36%), Positives = 395/649 (60%), Gaps = 25/649 (3%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 ++ V L+ +E+ Y+ Y++S I RA+PD+RDG KPVHRRI+++M E+GL +F KSA Sbjct: 12 IEDVDLKTQMEKCYIDYSMSVIIGRALPDIRDGLKPVHRRILYSMHELGLTPDKSFHKSA 71 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 +VG + HPHGD S+YD++VR+AQ F RY L+ G+GNFG +DGD AAYRYTEA+M Sbjct: 72 NVVGHTMAYYHPHGDSSIYDAMVRMAQNFSMRYMLVEGKGNFGTLDGDPPAAYRYTEAKM 131 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 +++ +L+ + +D V+FR ++E+ EP V PS+FPNLL NG++GIAVGMATSIP HN+ Sbjct: 132 NKISTEMLRDLGKDTVNFRPNFDEKKQEPEVLPSRFPNLLVNGSNGIAVGMATSIPPHNL 191 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ +A + +IDNP+ +++ ++ +I GPDFPTG +I+ RE+I ++Y GRG VRA+ Sbjct: 192 GEVIDAVVEIIDNPDATLDDIMNHIKGPDFPTGALIM-GREAIKKAYETGRGKIIVRAKT 250 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI-VLFP 315 +EE+ G I+VTEIPYQV K+ L+EKI +L+ K+I + D+RDES++ I ++ Sbjct: 251 EIEELPNGKSEIIVTEIPYQVNKAMLVEKIGQLVRDKKIEGVTDLRDESSKKTGIKIVIE 310 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 R ++P++++ ++F S ++ + + + + G P+++ L IL+ +L +++EV+ RR Sbjct: 311 TRRDVNPNVVLNNLFKHSSLQEVYSVILLSIVDGE-PKILNLVDILQYYLKYQKEVVTRR 369 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE-DKPKPVMVSRFSLTENQVDAILNL 434 + F + R+ +++GLLIA NIDE+I IIR+ D ++ RFSL+E Q AIL++ Sbjct: 370 TKFDLNKALERLHLVQGLLIAIDNIDEVIEIIRSAYDDAMQKLMDRFSLSEVQATAILDM 429 Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494 RLR L+ LE+ +++ E L + +S+L S ++ + I EI E+++ K D+ R Sbjct: 430 RLRRLQGLEKEKLQDEERELGEKIAYFNSILESEEKLLSIIKEEIIEIRD---KYKDVRR 486 Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSVDLSALHFK 546 + T K T I E +T+ ++++G+I+ L K +S++ K Sbjct: 487 TQITSMPHEIDIKDT-----IPNEEVTITLTHQGYIKRLPVDTYKAQKRGGKGISSMTTK 541 Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVT 604 E D ++ L ++IL ++ GK Y L A + S G I L+ L ++ I T Sbjct: 542 EEDFVEKLLITSNHEKILFITNKGKIYNLNAYEIPQTSRTAKGSNIINLLPLEKDEKIAT 601 Query: 605 AFVY---DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM 650 + +++ + KG SE + R+G + + ++++ Sbjct: 602 IITTRENEDNAYIVMCTKKGIIKKTRISEFTKSKRQGMKAINLKEDDEL 650 >gi|41642|emb|CAA40461.1| DNA gyrase subunit A [Escherichia coli K-12] Length = 875 Score = 413 bits (1062), Expect = e-113, Method: Compositional matrix adjust. Identities = 255/659 (38%), Positives = 380/659 (57%), Gaps = 65/659 (9%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + V++ L+ YL YA+S I RA+PD+RDG KPVHRR+++AM+ +G D+ A+KKSA Sbjct: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG+IDGDSAAA RYTE R+ Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 ++A ++ ++++ VDF D Y+ + P V P+K PNLL NG+SGIAVGMAT+IP HN+ Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ LA ID+ +ISIE L+E+I PDFPT II R I E+YR GRG +RAR Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEHIPEPDFPTAAII-NGRRGIEEAYRTGRGKVYIRARA 246 Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314 VE + G I+V EIPYQV K+RLIEKIAEL+ KR+ + +RDES +D +RIV+ Sbjct: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K ++ ++++ +++ + ++ F +NM L G+ P++M L I+ ++ HRREV+ R Sbjct: 307 VKRDAVG-EVVLNNLYSQTQLQVSFGINMVALHHGQ-PKIMNLKDIIAAFVRHRREVVTR 364 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----------- 420 R+ F ++ R IL+ L +A NID II +IR+ P K +V+ Sbjct: 365 RTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAML 424 Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457 + LTE Q AIL+LRL+ L LE ++ E LL + Sbjct: 425 ERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQ 484 Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517 ++ +L S + I E+ V+E F G +R T + AD + +I + Sbjct: 485 IAELLRILGSADRLMEVIREELELVREQF------GDKRRTEITANSADINL--EDLITQ 536 Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569 E + V +S++G+++ + + SA KE D + L A+T D IL S+ Sbjct: 537 EDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSR 596 Query: 570 GKAYTLPAGNLLSG-RG-HGEAIQLLIDLNHNQDIVTAFV----YDSTCKLLVVSSKGN 622 G+ Y++ L RG G I L+ L ++ I TA + ++ K+ + ++ G Sbjct: 597 GRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERI-TAILPVTEFEEGVKVFMATANGT 654 >gi|15802778|ref|NP_288805.1| DNA gyrase subunit A [Escherichia coli O157:H7 EDL933] gi|12516566|gb|AAG57360.1|AE005455_1 DNA gyrase, subunit A, type II topoisomerase [Escherichia coli O157:H7 str. EDL933] Length = 875 Score = 413 bits (1062), Expect = e-113, Method: Compositional matrix adjust. Identities = 254/659 (38%), Positives = 379/659 (57%), Gaps = 65/659 (9%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + V++ L+ YL YA+S I RA+PD+RDG KPVHRR+++AM+ +G D+ A+KKSA Sbjct: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG+IDGDSAAA RYTE R+ Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 ++A ++ ++++ VDF D Y+ + P V P+K PNLL NG+SGIAVGMAT+IP HN+ Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ LA ID+ +ISIE +E+I GPDFPT II R I E+YR GRG +RAR Sbjct: 188 TEVINGCLAYIDDEDISIEGXMEHIPGPDFPTAAII-NGRRGIEEAYRTGRGKVYIRARA 246 Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314 VE + G +V EIPYQV K+RLIEKIAEL+ KR+ + +RDES +D +RIV+ Sbjct: 247 EVEVDAKTGRETXIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K ++ ++++ +++ + ++ F +NM L G+ P++M L I+ ++ HRREV+ R Sbjct: 307 VKRDAVG-EVVLNNLYSQTQLQVSFGINMVALHHGQ-PKIMNLKDIIAAFVRHRREVVTR 364 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----------- 420 R+ F ++ R IL+ L +A NID II +IR+ P K +V+ Sbjct: 365 RTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAML 424 Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457 + LTE Q AIL+LRL+ L LE ++ E LL + Sbjct: 425 ERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQ 484 Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517 ++ +L S + I E+ V+E F G +R T + AD + +I + Sbjct: 485 IAELLRILGSADRLMEVIREELELVREQF------GDKRRTEITANSADINL--EDLITQ 536 Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569 E + V +S++G+++ + + SA KE D + L A+T D IL S+ Sbjct: 537 EDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSR 596 Query: 570 GKAYTLPAGNLLSG-RG-HGEAIQLLIDLNHNQDIVTAFV----YDSTCKLLVVSSKGN 622 G+ Y++ L RG G I L+ L ++ I TA + ++ K+ + ++ G Sbjct: 597 GRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERI-TAILPVTEFEEGVKVFMATANGT 654 >gi|304437901|ref|ZP_07397848.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304369123|gb|EFM22801.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 832 Score = 413 bits (1061), Expect = e-113, Method: Compositional matrix adjust. Identities = 268/703 (38%), Positives = 398/703 (56%), Gaps = 46/703 (6%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 V+L ++ Y+ YA+S I RA+PD+RDG KPVHRRI++AM G+ +KKSARIV Sbjct: 30 VNLEHEMKNSYIDYAMSVIVARALPDVRDGLKPVHRRILYAMQGSGMTSSKPYKKSARIV 89 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 GEV+GK HPHGD SVYD++VR+AQ F RY L G GNFG++DGDSAAA RYTE RM+++ Sbjct: 90 GEVLGKYHPHGDSSVYDAIVRMAQDFSMRYMLADGHGNFGSVDGDSAAAMRYTEVRMSKI 149 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 AEL+L+ +D++ VDF D Y+ + EP V P+KFP LL NGT+GIAVGMAT+IP HN+ E+ Sbjct: 150 AELMLRDIDKETVDFTDNYDGSEKEPTVLPAKFPQLLVNGTAGIAVGMATNIPPHNMVEV 209 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 L LIDNP+ +I++L+ I GPDFPT G+I+ + E I ++Y GRG ++RAR +E Sbjct: 210 INGTLMLIDNPDTTIDELMGVIKGPDFPTAGLILGT-EEIRKAYTTGRGVIKMRARAHIE 268 Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319 + G I+VTE+PYQV K+RLIEKIAEL+ K+I + D+RDES ++ R Sbjct: 269 TMSNGKPRIIVTELPYQVNKARLIEKIAELVRDKQIDGVTDLRDESDRSGMRIVIELRRD 328 Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379 P++++ ++ + ++ F + M L G+ P +M L +L+ ++ H+ V+ RR+ + Sbjct: 329 SAPNVILNQLYKHTQLQDSFGVIMLALVDGQ-PVIMNLKHVLEHYIDHQETVITRRTRYE 387 Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAII---RNEDKPKPVMVSRFSLTENQVDAILNLRL 436 + + R IL+GL IA ++D +I I R D + ++ F LTE Q AIL+LRL Sbjct: 388 LAKAEARAHILEGLTIALDHLDAVITTIRESRTADIARTALMDGFKLTEKQAQAILDLRL 447 Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496 + L LE +I+ E +L E++ +L + I E+ EV++ K D R Sbjct: 448 QRLTGLEREKIEEEYQEVLKLIEELKGILADRMKVLAIIKNELIEVRD---KYGDKRRTE 504 Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSVDLSALHFKEG 548 TF + S D L I +E + V ++ +I+ + + V + + KE Sbjct: 505 ITF-DASEMDIKDL----IAEEDVVVTLTLNNYIKRIPLDTYRRQRRGGVGVRGMGTKET 559 Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEAIQLLIDLNHNQDIVTAF 606 D + L T IL + G+A+ L + + SGR G AI L+ + N + +TA Sbjct: 560 DIVSDLLITTTHHDILFFTNRGRAFVLKSYEIPESGRQAKGTAIVNLLAV-ENDERITAV 618 Query: 607 V----YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV-VKVTGDHV 661 + + + L + + G SE N RK V+ +E +L+ VK T Sbjct: 619 IQVKEFRADRYLFLGTKHGVVKKTPLSE-FGNIRKNG-LRAVNLDEDDELIGVKFTD--- 673 Query: 662 AVVGENR--------KLLIFSIDQIPEMSR-GKGVRLQSYKDG 695 GENR K + F D + M R +GVR + DG Sbjct: 674 ---GENRIMLGTRGGKAITFPEDGVRSMGRVARGVRGITLADG 713 >gi|296876569|ref|ZP_06900620.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus parasanguinis ATCC 15912] gi|296432562|gb|EFH18358.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus parasanguinis ATCC 15912] Length = 818 Score = 413 bits (1061), Expect = e-113, Method: Compositional matrix adjust. Identities = 237/631 (37%), Positives = 383/631 (60%), Gaps = 41/631 (6%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 ++N+ V+L ++ ++ YA+S I RA+PD+RDG KPVHRRI++ M+E+G+ K Sbjct: 3 DKNLIDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHK 62 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSARI G+V+GK HPHGD S+Y+++VR+AQ + RY L+ G GNFG++DGD AAA RYTE Sbjct: 63 KSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYTE 122 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 ARM+++A +L+ ++++ VDF D Y+ + EP+V P++FPNLL NG +GIAVGMAT+IP Sbjct: 123 ARMSKIALEMLRDINKNTVDFVDNYDASEREPLVLPARFPNLLVNGATGIAVGMATNIPP 182 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E +A ++DNPE++ +L+E + GPDFPTG +++ + I ++Y G+G +R Sbjct: 183 HNLGETIDAVKLMMDNPEVTTRELMEVLPGPDFPTGALVM-GKSGIHKAYETGKGSIVLR 241 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312 +R +E G IVVTE PY V K+++ E I L+ KRI + +RDES E VR V Sbjct: 242 SRTEIEVTKSGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 + + R ++++ ++F ++ M+T F NM + G VP+++ L IL ++ H++EV+ Sbjct: 302 IEVR-RDASANVILNNLFKMTQMQTNFGFNMLAIQNG-VPKILSLRQILGAYIEHQKEVV 359 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLTENQVD 429 RR+ F + + R IL+GLLIA +IDE+I IIRN + + + ++++F L+E Q Sbjct: 360 TRRTIFDKEKAEARAHILEGLLIALDHIDEVIRIIRNSQTDAEAQAELMAKFKLSERQSQ 419 Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489 AIL++RLR L LE +I+SE D+L+A + +L ++ I E+ EVK F + Sbjct: 420 AILDMRLRRLTGLERDKIQSEYDDLVALIADLADILAKPERVATIIKEELEEVKRKFGDA 479 Query: 490 TDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSL--------KSHSVDL 540 RRT E+ + +L+ + +IE+ + + +SN+G+I+ L K + Sbjct: 480 -----RRT---ELMVGEVLSLEDEDLIEETDVLITLSNKGYIKRLDQAEFTAQKRGGRGV 531 Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLLSGRG 585 K+ D ++ + T D +L + G+ Y LP NLL Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPIVNLLK-LD 590 Query: 586 HGEAIQLLIDLNHNQDIVTAFVYDSTCKLLV 616 GE+IQ +I++ ++ A+++ +T + LV Sbjct: 591 EGESIQTIINVEQDRSD-EAYLFFTTRQGLV 620 >gi|188587904|ref|YP_001919472.1| DNA gyrase subunit A [Clostridium botulinum E3 str. Alaska E43] gi|188498185|gb|ACD51321.1| DNA gyrase, A subunit [Clostridium botulinum E3 str. Alaska E43] Length = 849 Score = 413 bits (1061), Expect = e-113, Method: Compositional matrix adjust. Identities = 275/772 (35%), Positives = 428/772 (55%), Gaps = 58/772 (7%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 E + +V ++ +++ Y+ YA+S I RA+PD+RDG KPVHRRI+++M +GL ++ Sbjct: 5 EGKIISVDIKNEMKKCYIDYAMSVIVGRALPDVRDGLKPVHRRILYSMQILGLSPEKGYR 64 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 K ARIVG+V+GK HPHGD SVYD+LVR+AQ F RY L+ G GNFG++DGD AAA RYTE Sbjct: 65 KCARIVGDVLGKYHPHGDTSVYDALVRMAQDFSMRYMLVDGHGNFGSVDGDGAAAMRYTE 124 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 A+M ++A +L+ ++++ VDF ++ E+ EP V PS+FPNLL NG+SGIAVGMAT+IP Sbjct: 125 AKMNKIAVEMLRDINKNTVDFMPNFDGEEEEPTVLPSRFPNLLVNGSSGIAVGMATNIPP 184 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E+ + + LIDNPE SI +L+ I GPDFPTG I+ I +Y GRG VR Sbjct: 185 HNLGEVIDGTIMLIDNPESSILELMTKIKGPDFPTGATIM-GHAGIRSAYETGRGKIVVR 243 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312 A+ +EE G I+ TEIPYQV K++LIE IAEL+ K+I + D+RDES E +RIV Sbjct: 244 AKSEIEE-ENGRHKIIFTEIPYQVNKAKLIENIAELVKDKKITGISDLRDESDREGMRIV 302 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 + K R +P++++ ++ + ++ F + M L + +V+ L +L ++ ++EV+ Sbjct: 303 IELK-RDANPNIILNLLYKHTKLQDSFGVIMLAL-VNNETKVLNLKEVLVHYIDFQKEVI 360 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVD 429 RR++F + + R IL+GL IA NID +I+IIRN K ++ F+L+E Q Sbjct: 361 TRRTTFELNKAEARAHILEGLKIALDNIDRVISIIRNSSTSEIAKNTLMDEFNLSEKQSQ 420 Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489 AIL ++LR L LE +I E + LL + E + S+L S ++ I E+ E+K + Sbjct: 421 AILEMKLRRLTGLERDKIDDEYNELLKQMEYLRSILASEEKLLGVIKDELLEIKAKYGDE 480 Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD--------LS 541 RRT ++ + + +I++E + + ++ G+I+ + + + Sbjct: 481 -----RRT---DIEQDMNEINIEDLIQEEDVVITLTKSGYIKRISADVYSAQRRGGRGIQ 532 Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEAIQLLIDLNHN 599 A+ KE D + T +L + G+ Y L A + +GR G I LI + + Sbjct: 533 AMSTKEDDFVDHITITSTHSDVLFFTNRGRVYKLRAYEIPDAGRQAKGTNIINLIAIEAD 592 Query: 600 QDIVT----------AFVYDSTCKLLVVSSKGNAF--IVEESEIIANTRKGKTFLKVSSE 647 + I T +++ T + +V + N F + + I N R+ LK Sbjct: 593 EKIQTVLTVTDKRRDGYLFMGTKQGIVKKTHLNEFRNLRKNGLIAINLRENDELLK---- 648 Query: 648 EKMKLVVKVT-GD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFK 704 VK+T GD +V V +N L F+ + M R GV+ + KD I+ +C Sbjct: 649 ------VKITYGDANVMFVTQNGYALRFNEKDVRHMGRTASGVKAITLKDDDIA--VCMD 700 Query: 705 IC---EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753 I E L I G ++ + RGGVG + K ++GK + + Sbjct: 701 IAVDEEELLVISENGFGKRTPVSEY--KIQHRGGVGLITYKISEKTGKLVGA 750 >gi|28189081|dbj|BAC56228.1| DNA gyrase subunit A [Streptococcus suis] Length = 814 Score = 413 bits (1061), Expect = e-113, Method: Compositional matrix adjust. Identities = 237/639 (37%), Positives = 383/639 (59%), Gaps = 41/639 (6%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 ++N+ V+L ++ ++ YA+S I RA+PD+RDG KPVHRRI++ M+E+G+ K Sbjct: 3 DKNLVTVNLTNEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGITPDKPHK 62 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSARI G+V+GK HPHGD ++Y+++VR+AQ + R+ L+ G GNFG++DGD AAA RYTE Sbjct: 63 KSARITGDVMGKYHPHGDSAIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTE 122 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 ARM+++A +L+ ++++ VDF D Y+ + EP V P++FPNLL NGT+GIAVGMAT+IP Sbjct: 123 ARMSKIALEMLRDINKNTVDFADNYDSSEREPEVLPARFPNLLVNGTTGIAVGMATNIPP 182 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E +A L+DNP+++ +++E + GPDFPTG +++ + I +Y G+G +R Sbjct: 183 HNLGETIDAVKLLMDNPDVTTREIMEVLPGPDFPTGALVM-GKSGIHRAYETGKGSIVLR 241 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312 +R +EE G G IVVTE PY V KS++ E I +L+ KRI + +RDES E VR V Sbjct: 242 SRTEIEEYGNGRERIVVTEFPYMVNKSKVQEHIVKLVQEKRIGGMTAVRDESNREGVRFV 301 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 + + R ++++ ++F + M+T F NM + G VP+++ + IL+ ++ H++EV+ Sbjct: 302 IEVR-RDASANVILNNLFKQTQMQTNFSFNMLAIQNG-VPKILSVRQILESYIEHQKEVV 359 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVD 429 RR+ F + + R IL+GLLIA +IDE+I IIRN + + ++ RF L+E Q Sbjct: 360 TRRTQFDKEKAEARAHILEGLLIALDHIDEVIRIIRNSETDALAQAELMERFDLSERQSQ 419 Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489 AIL++RLR L LE +I+SE D L+A + +L ++ I E+ EVK ++ Sbjct: 420 AILDMRLRRLTGLERDKIQSEYDELVALIADLTDILAKPERVVLIIKEELEEVKRKYADP 479 Query: 490 TDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSL--------KSHSVDL 540 RRT E+ + +L+ + +IE+ + + +SN+G+I+ L K + Sbjct: 480 -----RRT---ELMVGEVLSLEDEDLIEEADVLITLSNQGYIKRLAQDEFQAQKRGGRGV 531 Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLLSGRG 585 K+ D ++ + T D +L + G+ Y LP NLL Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLE- 590 Query: 586 HGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAF 624 E+IQ +I++ +Q +++ +T + +V + N F Sbjct: 591 ENESIQTIINVTKDQ-TADHYLFFATRQGIVKRTNVNEF 628 >gi|162421768|ref|YP_001605843.1| DNA gyrase subunit A [Yersinia pestis Angola] gi|162354583|gb|ABX88531.1| DNA gyrase, A subunit [Yersinia pestis Angola] Length = 885 Score = 413 bits (1061), Expect = e-113, Method: Compositional matrix adjust. Identities = 258/659 (39%), Positives = 382/659 (57%), Gaps = 65/659 (9%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + V++ L+ YL YA+S I RA+PD+RDG KPVHRR++ AM+ +G D+ +KKSA Sbjct: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSA 67 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG++DGDSAAA RYTE RM Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRM 127 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 +++A +L +++D VDF Y+ + P V P++ PNLL NG+SGIAVGMAT+IP HN+ Sbjct: 128 SKIAHELLADLEKDTVDFVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ + LA I++ ISIE L+EYI GPDFPT II R I E+YR GRG +RAR Sbjct: 188 SEVIDGCLAYIEDENISIEGLMEYIPGPDFPTAAII-NGRRGIEEAYRTGRGKVYIRARA 246 Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314 VE + G I+V EIPYQV K+RLIEKIAEL+ KR+ + +RDES +D +RIV+ Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K ++ ++++ +++ L+ ++ F +NM LS G+ P+++ L IL ++ HRREV+ R Sbjct: 307 IKRDAVG-EVVLNNLYSLTQLQVTFGINMVALSQGQ-PKLLNLKDILVAFVRHRREVVTR 364 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-------------------------- 408 R+ F ++ R IL+ L IA NID II +IR Sbjct: 365 RTIFELRKARDRAHILEALAIALANIDPIIELIRRASTPAEAKAGLIASPWELGNVASML 424 Query: 409 ---NEDKPKP--------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457 +D +P + ++ LTE Q AIL+LRL+ L LE ++ E LL Sbjct: 425 ERAGDDAARPEWLEAEFGIRDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLTL 484 Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517 ++ +L + + I E+ +KE ++ DL RRT E++ + +I + Sbjct: 485 IGELIFILENPDRLMEVIREELVAIKEQYN---DL--RRT---EITANTSDINIEDLINQ 536 Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569 E + V +S++G+++ + + SA KE D + L A+T D IL S+ Sbjct: 537 EDVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSR 596 Query: 570 GKAYTLPAGNLL-SGRG-HGEAIQLLIDLNHNQDIVTAFV----YDSTCKLLVVSSKGN 622 G+ Y + L + RG G I L+ L N+ I TA + Y+ C + + ++ G Sbjct: 597 GRLYWMKVYQLPEASRGARGRPIVNLLPLEPNERI-TAILPVREYEEGCHVFMATASGT 654 >gi|114768820|ref|ZP_01446446.1| DNA gyrase subunit A [alpha proteobacterium HTCC2255] gi|114549737|gb|EAU52618.1| DNA gyrase subunit A [alpha proteobacterium HTCC2255] Length = 905 Score = 413 bits (1061), Expect = e-113, Method: Compositional matrix adjust. Identities = 262/728 (35%), Positives = 400/728 (54%), Gaps = 72/728 (9%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 +S+ ++ YL YA+S I RAIPDLRDG KPVHRRI++AM E G +++KSA+ V Sbjct: 23 ISIEEEMKTSYLDYAMSVIVSRAIPDLRDGLKPVHRRILYAMHENGYTHNKSYRKSAKSV 82 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+V+G HPHGD ++YD+LVR+AQ F PLI GQGNFG++DGD+AAA RYTEAR+ + Sbjct: 83 GDVMGSYHPHGDSAIYDALVRMAQDFSMSLPLIDGQGNFGSMDGDNAAAMRYTEARLDKP 142 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 +E +L +D++ V+F+D Y+ ++SEP V P+++PN+L NG GIAVGMAT+IP HN+ E+ Sbjct: 143 SEYLLLDIDKNTVNFQDNYDGKESEPTVLPARYPNMLVNGAGGIAVGMATNIPPHNLGEV 202 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 +A LALIDNPE++ L+EY+ PDFPTG +I+ R V++Y GRG +RA+ VE Sbjct: 203 IDATLALIDNPELTSSDLMEYVPAPDFPTGAVIL-GRSGAVKAYNEGRGSVIIRAKTRVE 261 Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE-DVRIVLFPKNR 318 E+ G + I++ EIPYQV K+ +IEKIAEL K+I + ++DES VR+V+ K R Sbjct: 262 EIRAGRYAIIIDEIPYQVNKASMIEKIAELSRDKKIEGISHVQDESDRVGVRVVVELK-R 320 Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378 ++++ +F + ++T F NM L+ G+ P+ + L L +++ R EV+ RR++F Sbjct: 321 DATAEVVLNQLFRFTPLQTSFGCNMLALNGGK-PEQLTLYKFLSYFISFREEVVARRTAF 379 Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP----KPVMVSR-------------- 420 + R IL GL +A N+DEI+A IR + P + +M R Sbjct: 380 ELNKARERSHILCGLAVAVSNVDEIVATIRGSNDPAEAREKLMTRRWPAADISQYISLID 439 Query: 421 -----------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGK 469 ++L+E Q AIL LRL+ L + ++ EL+ L + + +L S Sbjct: 440 DPSHTLNEDKSYNLSETQARAILELRLQRLTAMGVKEVTDELEELAGKIQNYLEILRSRD 499 Query: 470 QQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW 529 + + I+ E++EV E F+ RRT E + + +IEKE + V I+N G+ Sbjct: 500 RIMSIISDELKEVHEKFAVP-----RRTEIIEWA---GDMDDEDLIEKEDMVVTITNSGY 551 Query: 530 I--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL- 580 I R K + + K+ D + A+T +L +TDG Y L L Sbjct: 552 IKRTNLAEFREQKRGGKGIQGMSTKDEDFVTNMFVANTHTALLFFTTDGMVYKLKTWRLP 611 Query: 581 LSGR-GHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGN---AFIVEESEIIANTR 636 L GR G+AI ++ ++ I D+ + GN F + + N Sbjct: 612 LGGRNAKGKAIVNILPIDTGVSIAALMPIDAPDE-----EWGNLQIVFATDAGGVRRNAL 666 Query: 637 KGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGG 696 T +K + + MKL V+ +V + E+ L+ + S GK +R + Sbjct: 667 SDFTNVKSNGKIAMKLPEGVSIVNVRIATESDDFLLTT-------SLGKAIRFPT----- 714 Query: 697 ISDVICFK 704 +DV FK Sbjct: 715 -TDVRVFK 721 >gi|325696548|gb|EGD38438.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus sanguinis SK160] Length = 826 Score = 413 bits (1061), Expect = e-113, Method: Compositional matrix adjust. Identities = 257/713 (36%), Positives = 409/713 (57%), Gaps = 52/713 (7%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 + N+ V+L ++ ++ YA+S I RA+PD+RDG KPVHRRI++ M+E+G+ K Sbjct: 10 DRNLVNVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPEKPHK 69 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSARI G+V+GK HPHGD S+Y+++VR+AQ + RY L+ G GNFG++DGD AAA RYTE Sbjct: 70 KSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYTE 129 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 ARM+++A +L+ ++++ VD+ D Y+ + EPVV P++FPNLL NG +GIAVGMAT+IP Sbjct: 130 ARMSKIALEMLRDINKNTVDYIDNYDASEREPVVLPARFPNLLVNGATGIAVGMATNIPP 189 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E +A ++DNPE + ++E + GPDFPTG +++ + I +Y G+G +R Sbjct: 190 HNLGESIDAVKLVMDNPEATTRDIMEVLPGPDFPTGALVM-GKSGIHRAYETGKGSIVLR 248 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312 +R +EE+ G IVVTE PY V K+++ E I L+ KRI + +RDES E VR V Sbjct: 249 SRTKIEEMKNGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVRFV 308 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 + + R +++ ++F L+ M+T F NM + G VP+++ L IL ++ H++EV+ Sbjct: 309 IEVR-RDTSAHVILNNLFKLTQMQTNFSFNMLAIQNG-VPKILSLREILLAYIEHQKEVV 366 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVD 429 RR+ F + + R IL GLLIA +IDE+I IIRN + + + ++++F L+E Q Sbjct: 367 TRRTVFDKEKAEARAHILAGLLIALDHIDEVIRIIRNSETDAEAQAELMAKFELSERQSQ 426 Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489 AIL++RLR L LE +I+SE D L+A + +L ++ I E+ EVK F+ Sbjct: 427 AILDMRLRRLTGLERDKIQSEYDELIALIADLADILAKPERVIAIIKEELDEVKRKFADD 486 Query: 490 TDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSL--------KSHSVDL 540 RRT E+ + +L+ + +IE+ + + +SN+G+I+ L K + Sbjct: 487 -----RRT---ELMVGEVLSLEDEDLIEEADVLITLSNKGYIKRLNQAEFTAQKRGGRGV 538 Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLLSGRG 585 K+ D +K + T DR+L + G+ Y LP NLL Sbjct: 539 QGTGVKDDDFVKELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLK-LD 597 Query: 586 HGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK-GKTFLKV 644 GE IQ +I++ ++ ++++ +T +V + F AN R+ G L + Sbjct: 598 EGETIQTIINVQQDRSD-DSYLFFTTRHGVVKRTSVTEF--------ANIRQNGLKALNL 648 Query: 645 SSEEKMKLVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSR-GKGVRLQSYKDG 695 E+++ V G ++G + F+ + MSR GVR + +DG Sbjct: 649 KDEDELINVFLTDGAADVIIGTKFGYSVRFNETAVRSMSRIATGVRGVNLRDG 701 >gi|254166731|ref|ZP_04873585.1| DNA gyrase, A subunit [Aciduliprofundum boonei T469] gi|289596496|ref|YP_003483192.1| DNA gyrase, A subunit [Aciduliprofundum boonei T469] gi|197624341|gb|EDY36902.1| DNA gyrase, A subunit [Aciduliprofundum boonei T469] gi|289534283|gb|ADD08630.1| DNA gyrase, A subunit [Aciduliprofundum boonei T469] Length = 788 Score = 413 bits (1061), Expect = e-113, Method: Compositional matrix adjust. Identities = 251/687 (36%), Positives = 411/687 (59%), Gaps = 42/687 (6%) Query: 26 LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85 +++ Y+ YA+S I RA+PD+RDG KPVHRRI++ M E+GL +KKSARIVGEV+GK Sbjct: 12 MKDSYMDYAMSVIVSRALPDVRDGLKPVHRRILYGMYELGLYHNKPYKKSARIVGEVMGK 71 Query: 86 LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145 HPHGDQ++Y++L R+AQ F RY L+ GQGNFG+IDGDS AA RYTEAR+ ++AE +L+ Sbjct: 72 YHPHGDQAIYNTLARMAQDFSMRYLLVDGQGNFGSIDGDSPAAMRYTEARLAKIAEEMLK 131 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 +D + VDF ++ EPVV P++ PNLL NG+SGIAVGMAT++P HN+ EI +A + Sbjct: 132 DIDMETVDFMPNFDGTLKEPVVLPARIPNLLINGSSGIAVGMATNMPPHNLSEIVDALIY 191 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265 LID+P+ +++LLE++ GPDFPTGG I+ E +V++YR G+G +VRA++ V+E Sbjct: 192 LIDHPDADVDELLEFVKGPDFPTGGTII-GYEGLVDAYRTGKGKIKVRAKYEVKE----- 245 Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFPKNRSLDPDL 324 I++ EIPY+V KS L++KIA L+ ++ + D++DES E +RIV+ K R ++P++ Sbjct: 246 DRIIIKEIPYEVNKSTLLKKIASLVREDKLRGISDLKDESDREGIRIVIKVK-RDMNPEI 304 Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384 ++ + +D+E + + +N++ + VP+++ L ++KE++ HR EVL R+ +++++ Sbjct: 305 VVNQLLEHTDLEVTYGI-INLVLVDGVPRILNLKELMKEYIRHRMEVLVRKLNYQLRKAK 363 Query: 385 RRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSL--TENQVDAILNLRLRSLRKL 442 R I++GL+ A IDE+IA I+ K ++ SL +E Q AIL++RL+ L + Sbjct: 364 ERKHIVEGLVKALGMIDEVIATIKASKDVKEATINLVSLGFSEVQAKAILDMRLQKLTSM 423 Query: 443 EEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCE- 501 E + E L + + ++SLL S ++++ I E+ E+K ++ +RRT + Sbjct: 424 EIDALIEENRKLEEDIKNMESLLASEEKRYGVIKEELFEIKNLYGD-----KRRTDIYKG 478 Query: 502 -VSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA-------LHFKEGDSLKI 553 V R D + +I E ++++ +G+IR LK +++ EGD + Sbjct: 479 AVERRD----IEDLIPNEEAVIILTEKGYIRRLKVDEYRAQGRGGKGVMINYGEGDLPRD 534 Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQDIVTAFVYDST 611 A+ D ++ + +G+ Y L A + G R G AI +I + I + D + Sbjct: 535 ITTANLHDYLMFFTKNGRVYWLKAYEVPEGTRRSRGRAIINIIPKLGSDVIRMLSLNDFS 594 Query: 612 CKLLVVSSKGNAFIVEES--EIIANTRKGKTFLKVSSEEKMKLVVKVT--GDHVAVVGEN 667 L ++ G IV+ + E +N R + E+ + VK+T G+ + + + Sbjct: 595 GYLFFITRNG---IVKRTSLEEFSNPRSTGIRAIIFDEDDELVDVKITHGGEDIFLFTKY 651 Query: 668 RKLLIFSIDQIPEMSRGK----GVRLQ 690 K + FS D + M R G++LQ Sbjct: 652 GKAIRFSEDDVRVMGRTARGVIGIKLQ 678 >gi|269791887|ref|YP_003316791.1| DNA gyrase, A subunit [Thermanaerovibrio acidaminovorans DSM 6589] gi|269099522|gb|ACZ18509.1| DNA gyrase, A subunit [Thermanaerovibrio acidaminovorans DSM 6589] Length = 816 Score = 413 bits (1061), Expect = e-113, Method: Compositional matrix adjust. Identities = 260/708 (36%), Positives = 409/708 (57%), Gaps = 46/708 (6%) Query: 7 SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66 N ++ + + V + L ++ Y+ YA+S I RA+PD RDG KPV RRI++AM E+GL Sbjct: 4 GNGSSDLFQKVIPLPLEEEIKHSYIDYAMSVIVGRALPDARDGLKPVQRRILYAMRELGL 63 Query: 67 DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126 FKKSAR+VGE +GK HPHGD ++Y+++VR++Q F RYPL+ GQGNFG+IDGD Sbjct: 64 RHSQPFKKSARVVGETMGKYHPHGDAAIYETMVRMSQDFSMRYPLVDGQGNFGSIDGDPP 123 Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186 AA RYTEAR+ + E +L +DED VD+ ++E EP V PS+ PNLL NG++GIAVG Sbjct: 124 AAMRYTEARLHSLGEEMLADIDEDTVDWLPNFDESLEEPAVLPSRIPNLLVNGSTGIAVG 183 Query: 187 MATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLG 246 MAT++P HN++E+ +A L+DNP++ + +L+ ++ GPDFPTGG+I+ R+ I+++Y G Sbjct: 184 MATNMPPHNLREVVDACCTLLDNPDVEVGELMTHVPGPDFPTGGVIM-GRDGIIDAYTTG 242 Query: 247 RGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA 306 RG VR +E+ RG IV+T+IPY V KS LIE I + + A ++ + D+RDES Sbjct: 243 RGKIVVRGCAEIEDAKRGKKAIVITQIPYMVNKSNLIETIVKGVQAGQLDGITDVRDESN 302 Query: 307 -EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365 E +R+VL +R DP L++ ++ + ++T F + L GR P + L G+L+ ++ Sbjct: 303 REGIRLVL-ELHRDSDPHLVLRQLYSRTQLQTTFGVINLALVDGR-PVELNLKGLLQIFI 360 Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFS 422 HRR V+ RR+ +R++ + R IL+GL+ A ID +IA+IR+ + P K +V Sbjct: 361 DHRRMVVRRRTQYRLRKAEERAHILEGLVKALDMIDMVIALIRSSEDPLVAKGRLVEELG 420 Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482 TE Q AIL++RL+ L LE+++++ EL L+A+ + +L + + + E+ EV Sbjct: 421 FTEAQAQAILDMRLQRLTSLEKHKLQEELAELMAQIARYRLILGDPAELDSVVREELLEV 480 Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542 K + G R T E S D + + + E E + V ++ G+IR + A Sbjct: 481 KRAY------GDERRTVIEDS-VDDVSYEDLIPETE-VVVAMTRDGFIRRMPLQDYRCQA 532 Query: 543 LHFK--EGDSLK----IALHA-HTTDRILLLSTD-GKAYTLPAGNLLSGR-GHGEAIQLL 593 K +G ++K ++L A TT R L L TD G+ ++L + + G G+ + Sbjct: 533 RGGKGVKGAAVKGEDEVSLVAVTTTHRSLYLFTDRGRVFSLKCLAIPEPKSGRGKHVSTF 592 Query: 594 IDLNHNQDIVTAFVYDSTCK----LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649 I L+ + +VT DS + + +V+ G A + E+ TR G+ L + ++ Sbjct: 593 ISLDEGESVVT--FRDSALEGARFVFLVTKMGLAKRLPVGELEGITRAGRRILGLEEDDT 650 Query: 650 MKLVVKVTGDHVAVVGENRKLLIFSIDQI---------PEMSRGKGVR 688 + V+ TG GE++ LL + Q P+ KGVR Sbjct: 651 IAR-VRFTG------GEDQLLLTTAKGQTLRVSETEFRPQGRAAKGVR 691 >gi|322385576|ref|ZP_08059220.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus cristatus ATCC 51100] gi|321270314|gb|EFX53230.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus cristatus ATCC 51100] Length = 816 Score = 413 bits (1061), Expect = e-113, Method: Compositional matrix adjust. Identities = 257/712 (36%), Positives = 407/712 (57%), Gaps = 50/712 (7%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 + N+ V+L ++ ++ YA+S I RA+PD+RDG KPVHRRI++ M+E+G+ K Sbjct: 3 DRNLVDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHK 62 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSARI G+V+GK HPHGD S+Y+++VR+AQ + RY L+ G GNFG++DGD AAA RYTE Sbjct: 63 KSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYTE 122 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 ARM+++A +L+ ++++ VD+ D Y+ + EP+V P++FPNLL NG +GIAVGMAT+IP Sbjct: 123 ARMSKIALEMLRDINKNTVDYIDNYDASEREPMVLPARFPNLLVNGATGIAVGMATNIPP 182 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E +A ++DNPE + ++E + GPDFPTG +++ + I +Y G+G +R Sbjct: 183 HNLGESIDAVKLVMDNPEATTRDIMEVLPGPDFPTGALVM-GKSGIHRAYETGKGSIVLR 241 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312 +R +EE+ G IVVTE PY V K+++ E I L+ KRI + +RDES E VR V Sbjct: 242 SRTEIEEMKNGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVRFV 301 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 + + R +++ ++F L+ M+T F NM + G VP+++ L IL ++ H++EV+ Sbjct: 302 IEVR-RDASAHVILNNLFKLTQMQTNFSFNMLAIQNG-VPKILSLREILLAYIEHQKEVV 359 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVD 429 RR++F + + R IL GLLIA +IDE+I IIRN + + + ++++F L+E Q Sbjct: 360 TRRTAFDKEKAEARAHILAGLLIALDHIDEVIRIIRNSETDAEAQAELMAKFELSERQSQ 419 Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489 AIL++RLR L LE +I+SE D L+A + +L ++ I E+ EVK F+ Sbjct: 420 AILDMRLRRLTGLERDKIQSEYDELIALIADLADILAKPERVVAIIKEELDEVKRKFADD 479 Query: 490 TDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSL--------KSHSVDL 540 RRT E+ + +L+ + +IE+ + + +SN+G+I+ L K + Sbjct: 480 -----RRT---ELMVGEVLSLEDEDLIEEADVLITLSNKGYIKRLNQAEFTAQKRGGRGV 531 Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLLSGRG 585 K+ D +K + T DR+L + G+ Y LP NLL Sbjct: 532 QGTGVKDDDFVKELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLK-LD 590 Query: 586 HGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS 645 GE IQ +I++ + + + T +L VV + E + I N G L + Sbjct: 591 EGETIQTIINVQQDSSDNSYLFF--TTRLGVVKRTS---VTEFANIRQN---GLKALNLK 642 Query: 646 SEEKMKLVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSR-GKGVRLQSYKDG 695 E+++ V G ++G + F+ + MSR GVR + +DG Sbjct: 643 DEDELINVFLTDGAADVIIGTKFGYSVRFNETAVRSMSRIATGVRGVNLRDG 694 >gi|304391773|ref|ZP_07373715.1| DNA gyrase, A subunit [Ahrensia sp. R2A130] gi|303296002|gb|EFL90360.1| DNA gyrase, A subunit [Ahrensia sp. R2A130] Length = 941 Score = 413 bits (1061), Expect = e-113, Method: Compositional matrix adjust. Identities = 259/766 (33%), Positives = 404/766 (52%), Gaps = 59/766 (7%) Query: 2 GVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61 G D SN +V + +S+ + YL YA+S I RA+PD+RDG KPVHRRI++AM Sbjct: 22 GGDGASNDGAIVPSAHENISIVDEMRRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYAM 81 Query: 62 SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121 EMGLD +++KSA ++GEV+GK HPHGD S+YD+LVR+AQ F R LI GQGNFG+I Sbjct: 82 HEMGLDHTKSYRKSAAVIGEVMGKYHPHGDSSIYDALVRMAQDFAMRQMLIDGQGNFGSI 141 Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181 DGD AA RYTE R+ ++++++L +D++ VDF+ Y+ EP+V P+++PNLL NG Sbjct: 142 DGDKPAAMRYTECRLARISDVLLDDIDKETVDFQANYDGSQREPMVLPARYPNLLVNGAG 201 Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241 GIAVGMAT+IP HN+ E+ + LA+ID P+I + +L+E I GPDFPTGG+I+ R I Sbjct: 202 GIAVGMATNIPPHNLGEVIDGCLAMIDKPDIELAELMELIPGPDFPTGGMIL-GRAGIKS 260 Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301 +Y GRG +R + +E G I++ E+PYQV K+ ++EKIAEL+ KRI + + Sbjct: 261 AYETGRGSVIMRGKAHIETSGSDREAIIINEVPYQVNKASMVEKIAELVRDKRIEGISAV 320 Query: 302 RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361 RDES V+ R D+++ ++ + +++ F N+ L+ G+ P+ M L +L Sbjct: 321 RDESDRQGYRVVIEVKRDAVADIVLNQLYRYTPLQSSFGCNLVALNGGK-PEQMNLVDML 379 Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP-------- 413 + ++ R EV+ RR+ F + + R +L GL IA NIDE+IA+IR P Sbjct: 380 RAFVGFREEVVTRRTKFLLNKVRIRAHVLVGLAIAVANIDEVIALIRKAPDPATARAQLM 439 Query: 414 ---------KPVMV------------SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELD 452 P++ ++L+E Q AIL+LRL+ L L +I EL+ Sbjct: 440 ERRWPAKDVAPLIALIDDPRHRINEDGTYNLSEEQARAILDLRLQRLTALGRDEIADELN 499 Query: 453 NLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ 512 + AE +L+S + + + E+ EV+E F+ RRT E+ + + Sbjct: 500 LIGAEIADYLDILSSRARVLDIVRTELGEVREEFANP-----RRT---EIIDSGYEHDDE 551 Query: 513 AMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRIL 564 +I +E + V +++ G+I R+ S + K+ D + +T +L Sbjct: 552 DLIAREEMVVTVTHGGYIKRVPLAAYRAQARGGKGRSGMSTKDEDFVTRLFVVNTHTPVL 611 Query: 565 LLSTDGKAYTLPAGN--LLSGRGHGEAIQLLIDLNHNQDIVTAF-------VYDSTCKLL 615 ST G AY L L +G G+A+ L+ L + I T +DS ++ Sbjct: 612 FFSTRGIAYKLKVWKLPLAQPQGRGKAMVNLLPLQAGETITTIMPLPEDEGSWDS-LDVM 670 Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV--TGDHVAVVGENRKLLIF 673 +++G + S+ + R GK +K+ E + V+V D V + + F Sbjct: 671 FATTRGTVRRNKLSDFVQVNRNGKIAMKLDDENDGIIGVEVCSASDDVLLTSSAGYGIRF 730 Query: 674 SIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719 +D + + V ++ + G VI I G SY Sbjct: 731 PVDDVRVFNSRNSVGVRGIRMGASDHVISMAIMRGFAATPEERVSY 776 >gi|269139681|ref|YP_003296382.1| DNA gyrase subunit A [Edwardsiella tarda EIB202] gi|267985342|gb|ACY85171.1| DNA gyrase subunit A [Edwardsiella tarda EIB202] gi|304559550|gb|ADM42214.1| DNA gyrase subunit A [Edwardsiella tarda FL6-60] Length = 878 Score = 413 bits (1061), Expect = e-113, Method: Compositional matrix adjust. Identities = 246/605 (40%), Positives = 358/605 (59%), Gaps = 60/605 (9%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + V++ L+ YL YA+S I RA+PD+RDG KPVHRR++ AM+ +G D+ +KKSA Sbjct: 8 ITPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSA 67 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD++VYD++VR+AQPF RY L+ GQGNFG+IDGDSAAA RYTE RM Sbjct: 68 RVVGDVIGKYHPHGDRAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVRM 127 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 ++A +L +D++ VD+ Y+ + P V P+K PNLL NG++GIAVGMAT+IP HN+ Sbjct: 128 AKIAHELLADLDKETVDYVPNYDGTEQIPDVLPTKVPNLLVNGSAGIAVGMATNIPPHNL 187 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ LA ID+ I+IE L+E+I GPDFPT II R I E+YR GRG VRAR Sbjct: 188 TEVINGCLAYIDDENITIEGLMEHIPGPDFPTAAII-NGRRGIEEAYRTGRGKIYVRARA 246 Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314 +E + G IVV EIPYQV K+RLIEKIAEL+ KR+ + +RDES +D +RIV+ Sbjct: 247 EIEVDDKNGRETIVVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K ++ ++++ +++ + M+ F +NM L G+ P+++ L L+ ++ HRREV+ R Sbjct: 307 VKRDAVG-EVVLNNLYTQTQMQVSFGINMVALHQGQ-PKLLTLKECLEAFVRHRREVVTR 364 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----------- 420 R+ F ++ R IL+GL IA +NID II +IR P K +VS+ Sbjct: 365 RTIFELRKARERAHILEGLAIALVNIDPIIELIRRAPTPAEAKAALVSQAWALGNVAAML 424 Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457 + LTE Q AIL+LRL+ L LE ++ E LL + Sbjct: 425 ARAGDDAARPEWLEPQYGIRDGHYHLTEQQAQAILDLRLQKLTGLEHEKLLDEYKALLEQ 484 Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ-QAMIE 516 + +L S ++ I E+ ++E F + RRT A+ A + + +IE Sbjct: 485 IAALIFILQSPERLMEVIREELIAIREQFGDA-----RRTEIT----ANTADINIEDLIE 535 Query: 517 KEPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568 +E + V +S++G+++ + + SA KE D + L A+T D IL S+ Sbjct: 536 QEDVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSS 595 Query: 569 DGKAY 573 G+ Y Sbjct: 596 RGRMY 600 >gi|251781168|ref|ZP_04824088.1| DNA gyrase, A subunit [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243085483|gb|EES51373.1| DNA gyrase, A subunit [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 849 Score = 413 bits (1061), Expect = e-113, Method: Compositional matrix adjust. Identities = 275/772 (35%), Positives = 428/772 (55%), Gaps = 58/772 (7%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 E + +V ++ +++ Y+ YA+S I RA+PD+RDG KPVHRRI+++M +GL ++ Sbjct: 5 EGKIISVDIKNEMKKCYIDYAMSVIVGRALPDVRDGLKPVHRRILYSMQILGLSPEKGYR 64 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 K ARIVG+V+GK HPHGD SVYD+LVR+AQ F RY L+ G GNFG++DGD AAA RYTE Sbjct: 65 KCARIVGDVLGKYHPHGDTSVYDALVRMAQDFSMRYMLVDGHGNFGSVDGDGAAAMRYTE 124 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 A+M ++A +L+ ++++ VDF ++ E+ EP V PS+FPNLL NG+SGIAVGMAT+IP Sbjct: 125 AKMNKIAVEMLRDINKNTVDFMPNFDGEEEEPTVLPSRFPNLLVNGSSGIAVGMATNIPP 184 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E+ + + LIDNPE SI +L+ I GPDFPTG I+ I +Y GRG VR Sbjct: 185 HNLGEVIDGTIMLIDNPESSILELMTKIKGPDFPTGATIM-GHAGIRSAYETGRGKIVVR 243 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312 A+ +EE G I+ TEIPYQV K++LIE IAEL+ K+I + D+RDES E +RIV Sbjct: 244 AKSEIEE-ENGRHKIIFTEIPYQVNKAKLIENIAELVKDKKITGISDLRDESDREGMRIV 302 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 + K R +P++++ ++ + ++ F + M L + +V+ L +L ++ ++EV+ Sbjct: 303 IELK-RDANPNIILNLLYKHTKLQDSFGVIMLAL-VNNETKVLNLKEVLVHYIDFQKEVI 360 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVD 429 RR++F + + R IL+GL IA NID +I+IIRN K ++ F+L+E Q Sbjct: 361 TRRTTFELNKAEARAHILEGLKIALDNIDRVISIIRNSSTSEIAKNTLMDEFNLSEKQSQ 420 Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489 AIL ++LR L LE +I E + LL + E + S+L S ++ I E+ E+K + Sbjct: 421 AILEMKLRRLTGLERDKIDDEYNELLKQMEYLRSILASEEKLLGVIKDELLEIKAKYGDE 480 Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD--------LS 541 RRT ++ + + +I++E + + ++ G+I+ + + + Sbjct: 481 -----RRT---DIEQDMNEINIEDLIQEEDVVITLTKSGYIKRISADVYSAQRRGGRGIQ 532 Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEAIQLLIDLNHN 599 A+ KE D + T +L + G+ Y L A + +GR G I LI + + Sbjct: 533 AMSTKEDDFVDHITITSTHSDVLFFTNRGRVYKLRAYEIPDAGRQAKGTNIINLIAIEAD 592 Query: 600 QDIVT----------AFVYDSTCKLLVVSSKGNAF--IVEESEIIANTRKGKTFLKVSSE 647 + I T +++ T + +V + N F + + I N R+ LK Sbjct: 593 EKIQTVLTITDKRRDGYLFMGTKQGIVKKTHLNEFRNLRKNGLIAINLRENDELLK---- 648 Query: 648 EKMKLVVKVT-GD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFK 704 VK+T GD +V V +N L F+ + M R GV+ + KD I+ +C Sbjct: 649 ------VKITYGDANVMFVTQNGYALRFNEKDVRHMGRTASGVKAITLKDDDIA--VCMD 700 Query: 705 IC---EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753 I E L I G ++ + RGGVG + K ++GK + + Sbjct: 701 IAVDEEELLVISENGFGKRTPVSEY--KIQHRGGVGLITYKISEKTGKLVGA 750 >gi|168187271|ref|ZP_02621906.1| DNA gyrase, A subunit [Clostridium botulinum C str. Eklund] gi|169294765|gb|EDS76898.1| DNA gyrase, A subunit [Clostridium botulinum C str. Eklund] Length = 846 Score = 413 bits (1061), Expect = e-113, Method: Compositional matrix adjust. Identities = 234/577 (40%), Positives = 356/577 (61%), Gaps = 24/577 (4%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 E N+ + ++ Y+ YA+S I RA+PD+RDG KPVHRRI+++M E+GL ++ Sbjct: 4 EGNIIPRDISKEMQRSYIDYAMSVIVGRALPDVRDGLKPVHRRILYSMHELGLTPEKGYR 63 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSARIVG+V+GK HPHGD +VYDSLVR+AQ F RY L+ G GNFG++DGD AAA RYTE Sbjct: 64 KSARIVGDVLGKYHPHGDTAVYDSLVRMAQDFSIRYTLVDGHGNFGSVDGDGAAAMRYTE 123 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 A+MT+V +L+ ++++ VDF ++ E+ EP V PS+FPNLL NG+SGIAVGMAT+IP Sbjct: 124 AKMTKVTLELLRDINKNTVDFIPNFDGEEKEPSVLPSRFPNLLVNGSSGIAVGMATNIPP 183 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E+ IDNP+IS+ +L+ I GPDFPT GIIV + I ++Y GRG +R Sbjct: 184 HNLTEVINGINKYIDNPDISVAELMAEIKGPDFPTAGIIV-GKSGIKKAYETGRGKVIIR 242 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIV 312 ++ +EE +G IVVTEIPYQV K+RLIE IA L+ KRI + D+RDES E +RIV Sbjct: 243 SKAEIEEDEKGKNRIVVTEIPYQVNKARLIESIANLVKDKRINGISDLRDESDREGMRIV 302 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 + K R + ++++ ++ + M+ F + M L G P+V+ L +LK ++ + EV+ Sbjct: 303 IELK-RDANANVVLNQLYKHTKMQDSFGIIMLALVNGE-PRVLSLKEVLKHYIKFQEEVI 360 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVD 429 RR+ F + R IL+GL IA +IDE+I +IR+ + + ++S+F+L+E Q + Sbjct: 361 TRRTQFDLDKALARAHILEGLRIALDHIDEVIKLIRSSKTTAEAREGLISKFNLSEKQAN 420 Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489 AIL+++L+ L LE +I+ E L+ + +L+ I E+ E+K + Sbjct: 421 AILDMKLQRLTGLEREKIEEEYAKLMESIKYFREILSDKDLLLKIIKDELNEIKVKYGDE 480 Query: 490 TDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSL--KSHSVD------L 540 RRT E+ D + + +IE+ + + +++ G+I+ L +++S + Sbjct: 481 -----RRT---EIVHGDGNDIDIEDLIEETDVVITLTHAGYIKRLPVETYSAQRRGGRGI 532 Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPA 577 A+ KE D ++ + + T D IL S G+ Y L A Sbjct: 533 QAMTTKEDDFVEHIITSSTHDNILFFSNRGRVYKLKA 569 >gi|322389479|ref|ZP_08063031.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus parasanguinis ATCC 903] gi|321143857|gb|EFX39283.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus parasanguinis ATCC 903] Length = 818 Score = 413 bits (1061), Expect = e-113, Method: Compositional matrix adjust. Identities = 237/631 (37%), Positives = 383/631 (60%), Gaps = 41/631 (6%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 ++N+ V+L ++ ++ YA+S I RA+PD+RDG KPVHRRI++ M+E+G+ K Sbjct: 3 DKNLIDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHK 62 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSARI G+V+GK HPHGD S+Y+++VR+AQ + RY L+ G GNFG++DGD AAA RYTE Sbjct: 63 KSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYTE 122 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 ARM+++A +L+ ++++ VDF D Y+ + EP+V P++FPNLL NG +GIAVGMAT+IP Sbjct: 123 ARMSKIALEMLRDINKNTVDFVDNYDASEREPLVLPARFPNLLVNGATGIAVGMATNIPP 182 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E +A ++DNPE++ +L+E + GPDFPTG +++ + I ++Y G+G +R Sbjct: 183 HNLGETIDAVKLMMDNPEVTTRELMEVLPGPDFPTGALVM-GKSGIHKAYETGKGSIVLR 241 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312 +R +E G IVVTE PY V K+++ E I L+ KRI + +RDES E VR V Sbjct: 242 SRTEIEVTKSGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 + + R ++++ ++F ++ M+T F NM + G VP+++ L IL ++ H++EV+ Sbjct: 302 IEVR-RDASANVILNNLFKMTQMQTNFGFNMLAIQNG-VPKILSLRQILGAYIEHQKEVV 359 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLTENQVD 429 RR+ F + + R IL+GLLIA +IDE+I IIRN + + + ++++F L+E Q Sbjct: 360 TRRTIFDKEKAEARAHILEGLLIALDHIDEVIRIIRNSQTDAEAQAELMAKFKLSERQSQ 419 Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489 AIL++RLR L LE +I+SE D+L+A + +L ++ I E+ EVK F + Sbjct: 420 AILDMRLRRLTGLERDKIQSEYDDLVALIADLADILAKPERVATIIKEELEEVKRKFGDA 479 Query: 490 TDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSL--------KSHSVDL 540 RRT E+ + +L+ + +IE+ + + +SN+G+I+ L K + Sbjct: 480 -----RRT---ELMIGEVLSLEDEDLIEETDVLITLSNKGYIKRLDQAEFTAQKRGGRGV 531 Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLLSGRG 585 K+ D ++ + T D +L + G+ Y LP NLL Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPIVNLLK-LD 590 Query: 586 HGEAIQLLIDLNHNQDIVTAFVYDSTCKLLV 616 GE+IQ +I++ ++ A+++ +T + LV Sbjct: 591 EGESIQTIINVEQDRSD-EAYLFFTTRQGLV 620 >gi|282600302|ref|ZP_05973771.2| DNA gyrase, A subunit [Providencia rustigianii DSM 4541] gi|282565780|gb|EFB71315.1| DNA gyrase, A subunit [Providencia rustigianii DSM 4541] Length = 874 Score = 413 bits (1061), Expect = e-113, Method: Compositional matrix adjust. Identities = 251/647 (38%), Positives = 379/647 (58%), Gaps = 60/647 (9%) Query: 7 SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66 S S + + + V++ L+ YL YA+S I RA+PD+RDG KPVHRR++ AM+ +G Sbjct: 4 SGSMSEIAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGN 63 Query: 67 DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126 D+ +KKSARIVG+VIGK HPHGD +VY+++VRLAQPF RY L+ GQGNFG++DGDSA Sbjct: 64 DWNKPYKKSARIVGDVIGKYHPHGDSAVYETIVRLAQPFSMRYMLVDGQGNFGSVDGDSA 123 Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186 AA RYTE RM ++A +L ++++ VDF Y+ + P V P++ PNLL NG+SGIAVG Sbjct: 124 AAMRYTEIRMAKIAHEMLADLEKETVDFVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVG 183 Query: 187 MATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLG 246 MAT+IP HN+ E+ LA I++ +ISIE L+E+I GPDFPT II R I+++YR G Sbjct: 184 MATNIPPHNLGEVINGCLAYIEDEDISIEGLMEHIPGPDFPTAAII-NGRRGIIDAYRTG 242 Query: 247 RGGFRVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305 RG +RAR VE + G I+V+EIPYQV K+RLIEKIAEL+ KR+ + +RDES Sbjct: 243 RGKVYIRARAEVEVDEKNGRETIIVSEIPYQVNKARLIEKIAELVKEKRVEGISALRDES 302 Query: 306 AED-VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364 +D +RIV+ K ++ ++++ +++ L+ ++ F +NM L G+ P+++ L I+ + Sbjct: 303 DKDGMRIVIEIKRDAVG-EVVLNNLYSLTQLQVSFGINMVALHQGQ-PKILNLKDIIAAF 360 Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR- 420 + HRREV+ RR+ F ++ R IL+ L +A NID II +IR P K ++SR Sbjct: 361 VRHRREVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRKAPTPAEAKAGLISRS 420 Query: 421 ---------------------------------FSLTENQVDAILNLRLRSLRKLEEYQI 447 + LTE Q AIL+LRL+ L LE ++ Sbjct: 421 WALGTVAAMLERAGDDAARPEWLEPQYGVHNGEYFLTEQQAQAILDLRLQKLTGLEHEKL 480 Query: 448 KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADK 507 E +LL + E++ +L S + I E+ ++ +++ + RRT E + AD Sbjct: 481 LEEYRDLLKQIEELLFILRSPDRLMEVIREELEAIRNVYNDA-----RRTEITE-NTADI 534 Query: 508 ATLQQAMIEKEPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHT 559 + +I +E + V +S++G+++ + + SA KE D ++ L A+T Sbjct: 535 NI--EDLINQEDVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIERLLVANT 592 Query: 560 TDRILLLSTDGKAYTLPAGNLL-SGRG-HGEAIQLLIDLNHNQDIVT 604 D IL S+ G+ Y + L + RG G I L+ L ++ I Sbjct: 593 HDTILCFSSRGRLYWMKVYQLPEASRGARGRPIVNLLPLEQDERITA 639 >gi|221195090|ref|ZP_03568146.1| DNA gyrase, A subunit [Atopobium rimae ATCC 49626] gi|221184993|gb|EEE17384.1| DNA gyrase, A subunit [Atopobium rimae ATCC 49626] Length = 929 Score = 413 bits (1061), Expect = e-113, Method: Compositional matrix adjust. Identities = 259/695 (37%), Positives = 398/695 (57%), Gaps = 37/695 (5%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 +K + + +L Y++S I RA+PD+RDG KPVHRRI++AM+E G+ KKSA Sbjct: 81 LKPTDMADEMRTSFLEYSMSVIVARALPDVRDGLKPVHRRILYAMNEAGITPNKPHKKSA 140 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 VGEV+GK HPHGD ++YDS+VR++Q F R PLI G GNFG+IDGD AA RYTEAR+ Sbjct: 141 WAVGEVMGKYHPHGDSAIYDSMVRMSQDFSMRLPLIDGHGNFGSIDGDPPAAMRYTEARL 200 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 T+ A +L ++++ VD + Y+E +EP V P++FPNLL NG+SGIAVGMAT+IP HN+ Sbjct: 201 TRSAMEMLADLNKNTVDMQPNYDEALTEPAVLPARFPNLLVNGSSGIAVGMATNIPPHNL 260 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ EA +IDNP+++ E+L+E + GPDFPTGGII+ + + I ++Y GRG VRA+ Sbjct: 261 GEVTEAVCMMIDNPDVTTEELMEVLPGPDFPTGGIIMGT-QGIKDAYETGRGSITVRAKV 319 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLFP 315 VE G +VVTEIPYQV K L EKIA+ + K+I + D+RDES + +RIV+ Sbjct: 320 HVESTKNGRQRLVVTEIPYQVNKGLLQEKIAQAVNEKKIEGISDMRDESNRKGMRIVIDL 379 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 K R P +++ +++ + +++ F + +++ + VP+ + L IL+ ++ H+ +V+ RR Sbjct: 380 K-RGEVPQVVLNNLYKRTQLQSNFGI-IDLALVDGVPRTLSLREILRCYIDHQIDVVRRR 437 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432 + F + +RV IL+GLL A NIDEI+ IIR ++ + K M RF L + Q +AIL Sbjct: 438 TEFDLDKALKRVHILEGLLTAVDNIDEIVHIIRSSQDDAEAKRRMHERFDLDDIQGEAIL 497 Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492 +RLR L L + E+ L + + LL + IA E+R++ FS Sbjct: 498 QMRLRRLTGLARQDLVDEISQLREDIAYYEDLLAHENKILAVIADELRDISNRFSN---- 553 Query: 493 GRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWI--------RSLKSHSVDLSAL 543 +RRT ++S D L + +I +E + V +++ G++ RS K + + Sbjct: 554 -KRRT---QISDQDVQNLDVEDLIAEEDMVVTVTHAGYVKRVPVEIYRSQKRGGKGVQGV 609 Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAY-----TLPAGNLLSGRGHGEAIQLLIDLNH 598 KE D ++ A T D +L + GK Y LP GN + G AI ++ L+ Sbjct: 610 SLKENDFVEELFVASTHDYVLFFTNFGKVYRVKVHELPVGNRTT---KGNAIVNVLSLSE 666 Query: 599 NQDI---VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655 + I +T + + L+ + +G SE + G + + +++ V + Sbjct: 667 GEKIAAVITTRDFPAENYLMFATKQGMVKKTAMSEYDRTRKDGIIAINLKQGDELVNVRR 726 Query: 656 V-TGDHVAVVGENRKLLIFSIDQIPEMSRG-KGVR 688 V GD V + + K ++F Q M RG GVR Sbjct: 727 VHPGDKVILCSSDGKAILFDESQARAMGRGTSGVR 761 >gi|114320084|ref|YP_741767.1| DNA gyrase subunit A [Alkalilimnicola ehrlichii MLHE-1] gi|114226478|gb|ABI56277.1| DNA gyrase subunit A [Alkalilimnicola ehrlichii MLHE-1] Length = 862 Score = 413 bits (1061), Expect = e-113, Method: Compositional matrix adjust. Identities = 271/795 (34%), Positives = 429/795 (53%), Gaps = 69/795 (8%) Query: 13 VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72 V + V+L + + YL YA+S I RA+PD+RDG KPVHRR+++AM E+G D+ ++ Sbjct: 4 VAREILPVNLEDEMRQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMRELGNDWNKSY 63 Query: 73 KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132 KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG+IDGD+AAA RYT Sbjct: 64 KKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFAMRYMLVDGQGNFGSIDGDAAAAMRYT 123 Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192 E RM+++A +L ++++ VD+ D Y+ +SEP V P++ PNLL NG SGIAVGMAT+IP Sbjct: 124 EVRMSRLAHELLADIEKETVDYLDNYDGSESEPTVLPTRVPNLLVNGGSGIAVGMATNIP 183 Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252 HN++E+ +A +ALID+ + ++ L++Y+ GPD PT GII I E+YR GRG + Sbjct: 184 PHNIREVIDACVALIDDDSLDVDALMQYLPGPDLPTAGII-NGTAGIHEAYRTGRGRMVM 242 Query: 253 RARWCVEEVGR-GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311 RAR +EE + G I+V+E+PYQV K+RL+EKIAEL+ KR+ + ++RDES +D Sbjct: 243 RARARIEEDDKSGKARIIVSELPYQVNKARLLEKIAELVKEKRVEGITELRDESDKDGIR 302 Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371 V+ R ++++ +++ + ++T F +NM L G+ P+++ L IL ++ HRREV Sbjct: 303 VVIELRRGEVGEVVLNNLYQHTQLQTVFGINMVALVDGQ-PKLLNLRQILDAFVRHRREV 361 Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR-------- 420 + RR+ F ++ R +L+GL +A NID +IA+I+ P K ++SR Sbjct: 362 VTRRTIFELRKARNRAHVLEGLAVALANIDPVIALIKASPGPAEAKTALMSRVWAPGMVT 421 Query: 421 ------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLA 456 + L+ Q AIL LRL L LE+ +I E LL Sbjct: 422 DMLERADATTPDDLSPDVGLGEDGYRLSAAQAQAILELRLHRLTGLEQEKILEEYRGLLE 481 Query: 457 EKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE 516 + ++ +L SG++ I E+ ++E + RR+ + +A TL+ +I Sbjct: 482 QIGELIHILESGERLMEVIREELVAIREQYGDE-----RRSEI--IPQALDLTLED-LIT 533 Query: 517 KEPITVVISNRGWIRS--LKSHSVDL------SALHFKEGDSLKIALHAHTTDRILLLST 568 + + V +S+ G+ +S L S+ SA K+ D + A+T D +L S+ Sbjct: 534 PQDVVVTLSHSGYAKSQPLDSYRAQRRGGRGKSATAMKDADFVDKLFVANTHDTLLCFSS 593 Query: 569 DGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNA 623 GK Y L L G + G+ I L+ L ++ I +D + + + G Sbjct: 594 HGKCYWLKVYELPQGSRQSRGKPIVNLLPLEPDERINAVLPVQEFDDAHFVFMATHNGTV 653 Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMS 682 S G L + +++ + V G V +V + K + F Q+ M Sbjct: 654 KKTPLSHFSRPRSNGIIALDLRADDWLVDVAITDGSRDVMLVSDAGKAIRFEESQVRAMG 713 Query: 683 RG----KGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGS 738 R +G+RL+ + VI I + + + Y + RGG+G Sbjct: 714 RTAAGVRGIRLEPGQ-----RVIALLILDDGDILSATANGYGKRTPVEEYPRRGRGGMGV 768 Query: 739 LVPKGFPRSGKFLSS 753 + + R+G+ + + Sbjct: 769 ICIQTSDRNGEVVGA 783 >gi|325694462|gb|EGD36371.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus sanguinis SK150] Length = 826 Score = 413 bits (1061), Expect = e-113, Method: Compositional matrix adjust. Identities = 257/713 (36%), Positives = 408/713 (57%), Gaps = 52/713 (7%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 + N+ V+L ++ ++ YA+S I RA+PD+RDG KPVHRRI++ M+E+G+ K Sbjct: 10 DRNLVNVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHK 69 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSARI G+V+GK HPHGD S+Y+++VR+AQ + RY L+ G GNFG++DGD AAA RYTE Sbjct: 70 KSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYTE 129 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 ARM+++A +L+ ++++ VD+ D Y+ + EPVV P++FPNLL NG +GIAVGMAT+IP Sbjct: 130 ARMSKIALEMLRDINKNTVDYLDNYDASEREPVVLPARFPNLLVNGATGIAVGMATNIPP 189 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E +A +DNPE + ++E + GPDFPTG +++ + I +Y G+G +R Sbjct: 190 HNLGESIDAVKLFMDNPEATTRDIMEVLPGPDFPTGALVM-GKSGIHRAYETGKGSIVLR 248 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312 +R +EE+ G IVVTE PY V K+++ E I L+ KRI + +RDES E VR V Sbjct: 249 SRTEIEEMKNGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVRFV 308 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 + + R +++ ++F L+ M+T F NM + G VP+++ L IL ++ H++EV+ Sbjct: 309 IEVR-RDASAHVILNNLFKLTQMQTNFSFNMLAIQNG-VPKILSLREILLAYIEHQKEVV 366 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVD 429 RR+ F + + R IL GLLIA +IDE+I IIRN + + + ++++F L+E Q Sbjct: 367 TRRTVFDKEKAEARAHILAGLLIALDHIDEVIRIIRNSETDAEAQAELMAKFELSERQSQ 426 Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489 AIL++RLR L LE +I+SE D L+A + +L ++ I E+ EVK F+ Sbjct: 427 AILDMRLRRLTGLERDKIQSEYDELIALIADLADILAKPERVIAIIKEELDEVKRKFADD 486 Query: 490 TDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSL--------KSHSVDL 540 RRT E+ + +L+ + +IE+ + + +SN+G+I+ L K + Sbjct: 487 -----RRT---ELMVGEVLSLEDEDLIEEADVLITLSNKGYIKRLNQAEFTAQKRGGRGV 538 Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLLSGRG 585 K+ D +K + T DR+L + G+ Y LP NLL Sbjct: 539 QGTGVKDDDFVKELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLK-LD 597 Query: 586 HGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK-GKTFLKV 644 GE IQ +I++ ++ ++++ +T +V + F AN R+ G L + Sbjct: 598 EGETIQTIINVQQDRSD-DSYLFFTTRHGVVKRTSVTEF--------ANIRQNGLKALNL 648 Query: 645 SSEEKMKLVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSR-GKGVRLQSYKDG 695 E+++ V G ++G + F+ + MSR GVR + +DG Sbjct: 649 KDEDELINVFLTDGAADVIIGTKFGYSVRFNETAVRSMSRIATGVRGVNLRDG 701 >gi|319947106|ref|ZP_08021340.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus australis ATCC 700641] gi|319747154|gb|EFV99413.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus australis ATCC 700641] Length = 820 Score = 413 bits (1061), Expect = e-113, Method: Compositional matrix adjust. Identities = 249/681 (36%), Positives = 400/681 (58%), Gaps = 50/681 (7%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 + N+ V+L ++ ++ YA+S I RA+PD+RDG KPVHRRI++ M+E+G+ K Sbjct: 3 DNNLVDVNLASEMKTSFIDYAMSVIVSRALPDVRDGLKPVHRRILYGMNELGVTPDKPHK 62 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSARI G+V+GK HPHGD S+Y+++VR+AQ + RY L+ G GNFG++DGD AAA RYTE Sbjct: 63 KSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYTE 122 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 ARM+++A +L+ ++++ VDF Y+ + EPVV P++FPNLL NG +GIAVGMAT+IP Sbjct: 123 ARMSKIALEMLRDINKNTVDFVANYDANEREPVVLPARFPNLLVNGATGIAVGMATNIPP 182 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E +A ++DNP+++ +L+E + GPDFPTG +++ + I ++Y G+G +R Sbjct: 183 HNLGESIDAVKLMMDNPDVTTRELMEVLPGPDFPTGALVM-GKSGIHKAYETGKGSIVLR 241 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312 +R +EE G IVVTE PY V K+++ E I L+ KRI + +RDES E VR V Sbjct: 242 SRTEIEETKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVRFV 301 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 + + R ++++ ++F ++ M+T F NM + G VP+++ L IL ++ H++EV+ Sbjct: 302 IEVR-RDASANVILNNLFKMTQMQTNFGFNMLAIQNG-VPKILSLREILGSYIEHQKEVV 359 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLTENQVD 429 RR+ F + + R IL+GLLIA +IDE+I IIRN + + + ++S+F L+E Q Sbjct: 360 TRRTIFDKEKAEARAHILEGLLIALDHIDEVIKIIRNSQTDAEAQAELMSKFKLSERQSQ 419 Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489 AIL++RLR L LE +I+SE D+L+A + +L ++ I E+ EVK F Sbjct: 420 AILDMRLRRLTGLERDKIQSEYDDLIALIADLADILAKPERVVAIIKEELDEVKRKFGDP 479 Query: 490 TDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSL--------KSHSVDL 540 RRT E+ + +L+ + +IE+ + + +SN+G+I+ L K + Sbjct: 480 -----RRT---ELMVGEVLSLEDEDLIEETNVLITLSNKGYIKRLDQDEFTAQKRGGRGV 531 Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLLSGRG 585 K+ D ++ + T DR+L + G+ Y LP NLL Sbjct: 532 QGTGVKDDDFVRELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYGRTAKGLPIVNLLK-LD 590 Query: 586 HGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK-GKTFLKV 644 GE+IQ +I++ ++ A+++ +T LV + F AN R+ G L + Sbjct: 591 DGESIQTIINVAQDRS-EDAYLFFTTRSGLVKRTSVAEF--------ANIRQNGLKALNL 641 Query: 645 SSEEKMKLVVKVTGDHVAVVG 665 E+++ V G+ ++G Sbjct: 642 KDEDELINVFLTDGNTDVIIG 662 >gi|322375381|ref|ZP_08049894.1| DNA gyrase, A subunit [Streptococcus sp. C300] gi|321279644|gb|EFX56684.1| DNA gyrase, A subunit [Streptococcus sp. C300] Length = 822 Score = 413 bits (1061), Expect = e-113, Method: Compositional matrix adjust. Identities = 234/611 (38%), Positives = 369/611 (60%), Gaps = 40/611 (6%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 + N+ V+L ++ ++ YA+S I RA+PD+RDG KPVHRRI++ M+E+G+ K Sbjct: 3 DRNLVNVNLTKEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHK 62 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSARI G+V+GK HPHGD S+Y+++VR+AQ + RY L+ G GNFG++DGD AAA RYTE Sbjct: 63 KSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYTE 122 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 ARM+++A +L+ ++++ VDF D Y+ + EP+V P++FPNLL NG +GIAVGMAT+IP Sbjct: 123 ARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIPP 182 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E +A ++DNPE++ + L+E + GPDFPTG +++ + I ++Y G+G +R Sbjct: 183 HNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVM-GKSGIHKAYETGKGSIVLR 241 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312 +R +E G IVVTE PY V K+++ E I L+ KRI + +RDES E VR V Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 + K R ++++ ++F ++ M+T F NM + G VP+++ L IL ++ H++EV+ Sbjct: 302 IEVK-RDASANVILNNLFKMTQMQTNFGFNMLAIQNG-VPKILSLRQILDAYIEHQKEVV 359 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVD 429 RR+ F + + R IL+GLLIA +IDE+I IIR + + + ++++F L+E Q Sbjct: 360 VRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMNKFKLSERQSQ 419 Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489 AIL++RLR L LE +I+SE D L+A + +L ++ I E+ EVK F Sbjct: 420 AILDMRLRRLTGLERDKIQSEYDELIALIADLADILAKPERVAQIIKEELDEVKRKFGD- 478 Query: 490 TDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSL--------KSHSVDL 540 +RRT E+ + TL+ + +IE+ + + +SN+G+I+ L K + Sbjct: 479 ----KRRT---ELMIGEVLTLEDEDLIEETDVLITLSNKGYIKRLDQGEFTAQKRGGRGV 531 Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLLSGRG 585 K+ D ++ + T D +L + G+ Y LP NLL Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLK-LD 590 Query: 586 HGEAIQLLIDL 596 GE+IQ +I++ Sbjct: 591 EGESIQTIINV 601 >gi|170025070|ref|YP_001721575.1| DNA gyrase subunit A [Yersinia pseudotuberculosis YPIII] gi|169751604|gb|ACA69122.1| DNA gyrase, A subunit [Yersinia pseudotuberculosis YPIII] Length = 897 Score = 413 bits (1061), Expect = e-113, Method: Compositional matrix adjust. Identities = 258/659 (39%), Positives = 382/659 (57%), Gaps = 65/659 (9%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + V++ L+ YL YA+S I RA+PD+RDG KPVHRR++ AM+ +G D+ +KKSA Sbjct: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSA 67 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG++DGDSAAA RYTE RM Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRM 127 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 +++A +L +++D VDF Y+ + P V P++ PNLL NG+SGIAVGMAT+IP HN+ Sbjct: 128 SKIAHELLADLEKDTVDFVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ + LA I++ ISIE L+EYI GPDFPT II R I E+YR GRG +RAR Sbjct: 188 SEVIDGCLAYIEDENISIEGLMEYIPGPDFPTAAII-NGRRGIEEAYRTGRGKVYIRARA 246 Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314 VE + G I+V EIPYQV K+RLIEKIAEL+ KR+ + +RDES +D +RIV+ Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K ++ ++++ +++ L+ ++ F +NM LS G+ P+++ L IL ++ HRREV+ R Sbjct: 307 IKRDAVG-EVVLNNLYSLTQLQVTFGINMVALSQGQ-PKLLNLKDILVAFVRHRREVVTR 364 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-------------------------- 408 R+ F ++ R IL+ L IA NID II +IR Sbjct: 365 RTIFELRKARDRAHILEALAIALANIDPIIELIRRASTPAEAKAGLIASPWELGNVASML 424 Query: 409 ---NEDKPKP--------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457 +D +P + ++ LTE Q AIL+LRL+ L LE ++ E LL Sbjct: 425 ERAGDDAARPEWLEAEFGIRDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLTL 484 Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517 ++ +L + + I E+ +KE ++ DL RRT E++ + +I + Sbjct: 485 IGELIFILENPDRLMEVIREELVAIKEQYN---DL--RRT---EITANTSDINIEDLINQ 536 Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569 E + V +S++G+++ + + SA KE D + L A+T D IL S+ Sbjct: 537 EDVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSR 596 Query: 570 GKAYTLPAGNLL-SGRG-HGEAIQLLIDLNHNQDIVTAFV----YDSTCKLLVVSSKGN 622 G+ Y + L + RG G I L+ L N+ I TA + Y+ C + + ++ G Sbjct: 597 GRLYWMKVYQLPEASRGARGRPIVNLLPLEPNERI-TAILPVREYEEGCHVFMATASGT 654 >gi|22126849|ref|NP_670272.1| DNA gyrase subunit A [Yersinia pestis KIM 10] gi|45440760|ref|NP_992299.1| DNA gyrase subunit A [Yersinia pestis biovar Microtus str. 91001] gi|108806927|ref|YP_650843.1| DNA gyrase subunit A [Yersinia pestis Antiqua] gi|108812921|ref|YP_648688.1| DNA gyrase subunit A [Yersinia pestis Nepal516] gi|145599746|ref|YP_001163822.1| DNA gyrase subunit A [Yersinia pestis Pestoides F] gi|149366793|ref|ZP_01888827.1| DNA gyrase subunit A [Yersinia pestis CA88-4125] gi|165924567|ref|ZP_02220399.1| DNA gyrase, A subunit [Yersinia pestis biovar Orientalis str. F1991016] gi|165938316|ref|ZP_02226874.1| DNA gyrase, A subunit [Yersinia pestis biovar Orientalis str. IP275] gi|166009847|ref|ZP_02230745.1| DNA gyrase, A subunit [Yersinia pestis biovar Antiqua str. E1979001] gi|166211545|ref|ZP_02237580.1| DNA gyrase, A subunit [Yersinia pestis biovar Antiqua str. B42003004] gi|167400296|ref|ZP_02305809.1| DNA gyrase, A subunit [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167419713|ref|ZP_02311466.1| DNA gyrase, A subunit [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167424281|ref|ZP_02316034.1| DNA gyrase, A subunit [Yersinia pestis biovar Mediaevalis str. K1973002] gi|218928375|ref|YP_002346250.1| DNA gyrase subunit A [Yersinia pestis CO92] gi|229841160|ref|ZP_04461319.1| DNA gyrase subunit A [Yersinia pestis biovar Orientalis str. PEXU2] gi|229843265|ref|ZP_04463411.1| DNA gyrase subunit A [Yersinia pestis biovar Orientalis str. India 195] gi|229894119|ref|ZP_04509305.1| DNA gyrase subunit A [Yersinia pestis Pestoides A] gi|229903351|ref|ZP_04518464.1| DNA gyrase subunit A [Yersinia pestis Nepal516] gi|270487161|ref|ZP_06204235.1| DNA gyrase, A subunit [Yersinia pestis KIM D27] gi|294503230|ref|YP_003567292.1| DNA gyrase subunit A [Yersinia pestis Z176003] gi|21959880|gb|AAM86523.1|AE013898_6 DNA gyrase, subunit A, type II topoisomerase [Yersinia pestis KIM 10] gi|45435618|gb|AAS61176.1| DNA gyrase subunit A [Yersinia pestis biovar Microtus str. 91001] gi|108776569|gb|ABG19088.1| DNA gyrase subunit A [Yersinia pestis Nepal516] gi|108778840|gb|ABG12898.1| DNA gyrase subunit A [Yersinia pestis Antiqua] gi|115346986|emb|CAL19877.1| DNA gyrase subunit A [Yersinia pestis CO92] gi|145211442|gb|ABP40849.1| DNA gyrase subunit A [Yersinia pestis Pestoides F] gi|149291167|gb|EDM41242.1| DNA gyrase subunit A [Yersinia pestis CA88-4125] gi|165913694|gb|EDR32313.1| DNA gyrase, A subunit [Yersinia pestis biovar Orientalis str. IP275] gi|165923627|gb|EDR40759.1| DNA gyrase, A subunit [Yersinia pestis biovar Orientalis str. F1991016] gi|165991243|gb|EDR43544.1| DNA gyrase, A subunit [Yersinia pestis biovar Antiqua str. E1979001] gi|166207316|gb|EDR51796.1| DNA gyrase, A subunit [Yersinia pestis biovar Antiqua str. B42003004] gi|166962454|gb|EDR58475.1| DNA gyrase, A subunit [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167050245|gb|EDR61653.1| DNA gyrase, A subunit [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167057130|gb|EDR66893.1| DNA gyrase, A subunit [Yersinia pestis biovar Mediaevalis str. K1973002] gi|229679121|gb|EEO75224.1| DNA gyrase subunit A [Yersinia pestis Nepal516] gi|229689612|gb|EEO81673.1| DNA gyrase subunit A [Yersinia pestis biovar Orientalis str. India 195] gi|229697526|gb|EEO87573.1| DNA gyrase subunit A [Yersinia pestis biovar Orientalis str. PEXU2] gi|229704004|gb|EEO91017.1| DNA gyrase subunit A [Yersinia pestis Pestoides A] gi|262361269|gb|ACY57990.1| DNA gyrase subunit A [Yersinia pestis D106004] gi|262365194|gb|ACY61751.1| DNA gyrase subunit A [Yersinia pestis D182038] gi|270335665|gb|EFA46442.1| DNA gyrase, A subunit [Yersinia pestis KIM D27] gi|294353689|gb|ADE64030.1| DNA gyrase subunit A [Yersinia pestis Z176003] gi|320015942|gb|ADV99513.1| DNA gyrase subunit A [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 891 Score = 413 bits (1061), Expect = e-113, Method: Compositional matrix adjust. Identities = 258/659 (39%), Positives = 382/659 (57%), Gaps = 65/659 (9%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + V++ L+ YL YA+S I RA+PD+RDG KPVHRR++ AM+ +G D+ +KKSA Sbjct: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSA 67 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG++DGDSAAA RYTE RM Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRM 127 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 +++A +L +++D VDF Y+ + P V P++ PNLL NG+SGIAVGMAT+IP HN+ Sbjct: 128 SKIAHELLADLEKDTVDFVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ + LA I++ ISIE L+EYI GPDFPT II R I E+YR GRG +RAR Sbjct: 188 SEVIDGCLAYIEDENISIEGLMEYIPGPDFPTAAII-NGRRGIEEAYRTGRGKVYIRARA 246 Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314 VE + G I+V EIPYQV K+RLIEKIAEL+ KR+ + +RDES +D +RIV+ Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K ++ ++++ +++ L+ ++ F +NM LS G+ P+++ L IL ++ HRREV+ R Sbjct: 307 IKRDAVG-EVVLNNLYSLTQLQVTFGINMVALSQGQ-PKLLNLKDILVAFVRHRREVVTR 364 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-------------------------- 408 R+ F ++ R IL+ L IA NID II +IR Sbjct: 365 RTIFELRKARDRAHILEALAIALANIDPIIELIRRASTPAEAKAGLIASPWELGNVASML 424 Query: 409 ---NEDKPKP--------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457 +D +P + ++ LTE Q AIL+LRL+ L LE ++ E LL Sbjct: 425 ERAGDDAARPEWLEAEFGIRDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLTL 484 Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517 ++ +L + + I E+ +KE ++ DL RRT E++ + +I + Sbjct: 485 IGELIFILENPDRLMEVIREELVAIKEQYN---DL--RRT---EITANTSDINIEDLINQ 536 Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569 E + V +S++G+++ + + SA KE D + L A+T D IL S+ Sbjct: 537 EDVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSR 596 Query: 570 GKAYTLPAGNLL-SGRG-HGEAIQLLIDLNHNQDIVTAFV----YDSTCKLLVVSSKGN 622 G+ Y + L + RG G I L+ L N+ I TA + Y+ C + + ++ G Sbjct: 597 GRLYWMKVYQLPEASRGARGRPIVNLLPLEPNERI-TAILPVREYEEGCHVFMATASGT 654 >gi|307708736|ref|ZP_07645199.1| DNA gyrase, A subunit [Streptococcus mitis NCTC 12261] gi|307615310|gb|EFN94520.1| DNA gyrase, A subunit [Streptococcus mitis NCTC 12261] Length = 822 Score = 413 bits (1061), Expect = e-113, Method: Compositional matrix adjust. Identities = 257/713 (36%), Positives = 412/713 (57%), Gaps = 52/713 (7%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 + N+ V+L ++ ++ YA+S I RA+PD+RDG KPVHRRI++ M+E+G+ K Sbjct: 3 DRNLVNVNLTKEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHK 62 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSARI G+V+GK HPHGD S+Y+++VR+AQ + RY L+ G GNFG++DGD AAA RYTE Sbjct: 63 KSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYTE 122 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 ARM+++A +L+ ++++ VDF D Y+ + EP+V P++FPNLL NG +GIAVGMAT+IP Sbjct: 123 ARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIPP 182 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E +A ++DNPE++ + L+E + GPDFPTG +++ + I ++Y G+G +R Sbjct: 183 HNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVM-GKSGIHKAYETGKGSIVLR 241 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312 +R +EE G IVVTE PY V K+++ E I L KRI + +RDES E VR V Sbjct: 242 SRTEIEETKTGRERIVVTEFPYMVNKTKVHEHIVRLXQEKRIEGITAVRDESNREGVRFV 301 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 + K R ++++ ++F ++ M+T F NM + G VP+++ L IL ++ H++EV+ Sbjct: 302 IEVK-RDASANVILNNLFKMTQMQTNFGFNMLAIQNG-VPKILSLRQILDAYIEHQKEVV 359 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVD 429 RR+ F + + R IL+GLLI+ +IDE+I IIR + + + ++S+F L+E Q Sbjct: 360 VRRTRFDKEKAEARAHILEGLLISLDHIDEVIRIIRASETDAEAQAELMSKFKLSERQSQ 419 Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489 AIL++RLR L LE +I+SE D+LLA + +L ++ I E+ EVK F Sbjct: 420 AILDMRLRRLTGLERDKIQSEYDDLLALIADLADILAKPERVSQIIKDELDEVKRKFGD- 478 Query: 490 TDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSL--------KSHSVDL 540 +RRT E+ + +L+ + +IE+ + + +SN+G+I+ L K + Sbjct: 479 ----QRRT---ELMVGEVLSLEDEDLIEEADVLITLSNKGYIKRLDQAEFTAQKRGGRGV 531 Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLLSGRG 585 K+ D ++ + T D +L + G+ Y LP NLL Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRIAKGLPIVNLLK-LD 590 Query: 586 HGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK-GKTFLKV 644 GE+IQ +I++ + A+++ +T +V + F AN R+ G L + Sbjct: 591 EGESIQTIINVESERSD-DAYLFFTTRHGIVKRTSVKEF--------ANIRQNGLKALNL 641 Query: 645 SSEEKMKLVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSR-GKGVRLQSYKDG 695 E+++ V+ D ++G I F+ + MSR GV+ + +DG Sbjct: 642 KDEDELINVLLTEEDTDIIIGTKFGYSIRFNQSAVRGMSRIATGVKGVNLRDG 694 >gi|159044025|ref|YP_001532819.1| DNA gyrase subunit A [Dinoroseobacter shibae DFL 12] gi|157911785|gb|ABV93218.1| DNA gyrase, A subunit [Dinoroseobacter shibae DFL 12] Length = 913 Score = 413 bits (1061), Expect = e-113, Method: Compositional matrix adjust. Identities = 246/673 (36%), Positives = 382/673 (56%), Gaps = 57/673 (8%) Query: 18 KAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSAR 77 + +S+ ++ YL YA+S I RAIPDLRDG KPVHRRI++AM E G A++KSAR Sbjct: 23 ETISIAEEMKSSYLDYAMSVIVSRAIPDLRDGLKPVHRRILYAMHETGNTHEKAYRKSAR 82 Query: 78 IVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMT 137 VG+V+GK HPHGD ++YD+LVR+AQ F PL+ GQGNFG++DGD+ AA RYTE RM Sbjct: 83 PVGDVMGKYHPHGDSAIYDALVRMAQDFSMSLPLLDGQGNFGSMDGDNPAAMRYTEVRMD 142 Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197 + A +L ++++ VDF+D Y+ +D EP V P++FPN+L NG GIAVGMAT+IP HN+ Sbjct: 143 KPAAALLADIEKETVDFQDNYDGKDREPTVLPARFPNMLVNGAGGIAVGMATNIPPHNLG 202 Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257 E+ +A LALI+ P++ +E L++YI PDFPTGG I+ R ++Y GRG +RA+ Sbjct: 203 EVIDATLALIETPDLEVEDLMQYIPAPDFPTGGQIL-GRGGARKAYLEGRGSVIIRAKTR 261 Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE-DVRIVLFPK 316 +EE+ + + IV+ EIPYQV KS +IEKIAEL+ KRI + ++DES VR+V+ K Sbjct: 262 IEELRKDRYAIVLDEIPYQVNKSSMIEKIAELVREKRIEGIAHVQDESDRVGVRVVIELK 321 Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376 R P++++ ++ + M+T F NM L+ GR P+ + L L +++ R EV+ RR+ Sbjct: 322 -RDATPEVVLNQLYRFTPMQTSFGCNMLALNGGR-PEQLTLKDFLSSFISFREEVVARRT 379 Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE-------------------------- 410 ++ ++ R +L GL +A N+DE++A IR Sbjct: 380 AYDLRKARERSHVLCGLAVAVSNVDEVVATIRASADAAEAREKLMTRRWPAADIADYIRL 439 Query: 411 -DKPKPVMV--SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467 D P M ++L+E Q AIL+LRL+ L ++ ++ EL L A+ ++ +L S Sbjct: 440 IDDPTHTMNEDGTYNLSETQARAILDLRLQRLTQIGVKEVTDELQELAAKIQEYLDILRS 499 Query: 468 GKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNR 527 + I+ E+REVK+ F+ RRT E++ + +IE+E + V +++ Sbjct: 500 RSRIMAIISDELREVKDQFAVP-----RRT---EITDWSGDMEDEDLIEREDMVVTVTSG 551 Query: 528 GWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN 579 G+I R+ + L+ + KE D + A+T +L+ +TDG Y L Sbjct: 552 GYIKRTPLVEFRAQRRGGKGLAGMATKEDDVVTTLFVANTHTPLLVFTTDGMVYKLKTWR 611 Query: 580 LLSG--RGHGEAIQLLIDLNHNQDIVTAFVYD------STCKLLVVSSKGNAFIVEESEI 631 L SG G+A+ ++ ++ I D + +++ +S G+ S+ Sbjct: 612 LPSGGRNARGKALVNVLPIDPGTSIAAIMPVDRAEEDWADLQIVFATSAGDVRRNALSDF 671 Query: 632 IANTRKGKTFLKV 644 R GK +K+ Sbjct: 672 TNVMRNGKIAMKL 684 >gi|189485009|ref|YP_001955950.1| DNA gyrase subunit A [uncultured Termite group 1 bacterium phylotype Rs-D17] gi|170286968|dbj|BAG13489.1| DNA gyrase subunit A [uncultured Termite group 1 bacterium phylotype Rs-D17] Length = 835 Score = 413 bits (1061), Expect = e-113, Method: Compositional matrix adjust. Identities = 237/620 (38%), Positives = 374/620 (60%), Gaps = 31/620 (5%) Query: 5 NISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEM 64 NI + ++ ++ ++ ++ Y+ YA+S I RA+PD+RDG KPVHRRI++AM EM Sbjct: 6 NIKDEQEILPVSIVPRNIEDEMKNSYIDYAMSVIVGRALPDVRDGLKPVHRRILYAMKEM 65 Query: 65 GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124 GL A+KKSARIVG+V+GK HPHGD +VY ++VR+ Q F RYP+I GQGNFG+IDGD Sbjct: 66 GLKHNTAYKKSARIVGDVLGKYHPHGDSAVYGAMVRMVQDFSLRYPMIDGQGNFGSIDGD 125 Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184 AAA RYTE RM + + +L +D++ VDF Y+ EPV+ P+K P+LL NG++GIA Sbjct: 126 FAAAMRYTEVRMDTITDEMLVDLDKNTVDFIPNYDGSLKEPVILPTKLPSLLINGSAGIA 185 Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244 VGMAT+IP+HN+ E+ +A + LID+ EIS+ ++++YI GPDFPTG II+ + I + Sbjct: 186 VGMATNIPAHNIVEVSDALVTLIDDKEISVSEIVKYIKGPDFPTGAIIL-GKSGIKDYME 244 Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304 GRG ++RA+ +EEV G I+V EIPYQV K+ LI IA+L+ K+I + D+RDE Sbjct: 245 KGRGSVKIRAKTEIEEVKSGREAIIVNEIPYQVNKANLITSIADLVKDKKIDGIADLRDE 304 Query: 305 SAED-VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363 S D +RIV+ K R + +++ ++ + M+ F + M L R P+VM + IL Sbjct: 305 SDRDGIRIVIEIK-RDANVQVVLNQLYKHTQMQLSFGVIMLALVNNR-PKVMNVKEILIH 362 Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSR 420 + HR+ ++ RR+ F +Q + R IL+GL IA NID +I II+ +ED + ++S+ Sbjct: 363 HIEHRKVIIIRRTKFDLQKAEARFHILEGLKIAIDNIDAVIKIIKESADEDNARVSLMSK 422 Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480 LT+ Q +AIL +++R L L+ +I E L+ EK+ S+L K+ + I E Sbjct: 423 LRLTKIQTEAILEMKIRQLTGLKRKEIDDEYLELIRLIEKLRSVLADPKKVLDIIKNEAL 482 Query: 481 EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD- 539 ++K + G +R T + + AD + +I++E + V +S+ G+I+ + + Sbjct: 483 DIKRKY------GDKRRTQIQAAEADFNI--EDLIQEEEVAVTMSHAGYIKRIPLDTYKA 534 Query: 540 -------LSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHG 587 ++A++ +E D ++ + +L +T G + Y +P G S G Sbjct: 535 QHRGGRGIAAMNTREEDFVENLFITSSHSYMLFFTTRGRLYWMRIYEIPEGARTS---KG 591 Query: 588 EAIQLLIDLNHNQDIVTAFV 607 +AI L+ L ++ +TA + Sbjct: 592 KAIVNLLQLQGTEEKITAAI 611 >gi|28189073|dbj|BAC56222.1| DNA gyrase subunit A [Streptococcus suis] Length = 814 Score = 412 bits (1060), Expect = e-113, Method: Compositional matrix adjust. Identities = 237/639 (37%), Positives = 383/639 (59%), Gaps = 41/639 (6%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 ++N+ V+L ++ ++ YA+S I RA+PD+RDG KPVHRRI++ M+E+G+ K Sbjct: 3 DKNLVTVNLTNEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGITPDKPHK 62 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSARI G+V+GK HPHGD ++Y+++VR+AQ + R+ L+ G GNFG++DGD AAA RYTE Sbjct: 63 KSARITGDVMGKYHPHGDSAIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTE 122 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 ARM+++A +L+ ++++ VDF D Y+ + EP V P++FPNLL NGT+GIAVGMAT+IP Sbjct: 123 ARMSKIALEMLRDINKNTVDFADNYDSSEREPEVLPARFPNLLVNGTTGIAVGMATNIPP 182 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E +A L+DNP+++ +++E + GPDFPTG +++ + I +Y G+G +R Sbjct: 183 HNLGETIDAVKLLMDNPDVTTREIMEVLPGPDFPTGALVM-GKSGIHRAYETGKGSIVLR 241 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312 +R +EE G G IVVTE PY V KS++ E I +L+ KRI + +RDES E VR V Sbjct: 242 SRTEIEEYGNGRERIVVTEFPYMVNKSKVQEHIVKLVQEKRIEGITAVRDESNREGVRFV 301 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 + + R ++++ ++F + M+T F NM + G VP+++ + IL+ ++ H++EV+ Sbjct: 302 IEVR-RDASANVILNNLFKQTQMQTNFSFNMLAIQNG-VPKILSVRQILESYIEHQKEVV 359 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVD 429 RR+ F + + R IL+GLLIA +IDE+I IIRN + + ++ RF L+E Q Sbjct: 360 TRRTQFDKEKAEARAHILEGLLIALDHIDEVIRIIRNSETDALAQAELMERFDLSERQSQ 419 Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489 AIL++RLR L LE +I+SE D L+A + +L ++ I E+ EVK ++ Sbjct: 420 AILDMRLRRLTGLERDKIQSEYDELVALIADLTDILAKPERVVLIIKEELEEVKRKYADP 479 Query: 490 TDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSL--------KSHSVDL 540 RRT E+ + +L+ + +IE+ + + +SN+G+I+ L K + Sbjct: 480 -----RRT---ELMVGEVLSLEDEDLIEEADVLITLSNQGYIKRLAQDEFQAQKRGGRGV 531 Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLLSGRG 585 K+ D ++ + T D +L + G+ Y LP NLL Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLE- 590 Query: 586 HGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAF 624 E+IQ +I++ +Q +++ +T + +V + N F Sbjct: 591 ENESIQTIINVTKDQ-TADHYLFFATRQGIVKRTNVNEF 628 >gi|157371506|ref|YP_001479495.1| DNA gyrase subunit A [Serratia proteamaculans 568] gi|157323270|gb|ABV42367.1| DNA gyrase, A subunit [Serratia proteamaculans 568] Length = 882 Score = 412 bits (1060), Expect = e-113, Method: Compositional matrix adjust. Identities = 274/730 (37%), Positives = 409/730 (56%), Gaps = 73/730 (10%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + V++ L+ YL YA+S I RA+PD+RDG KPVHRR++ AMS +G D+ +KKSA Sbjct: 8 ITPVNIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSVLGNDWNKPYKKSA 67 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG++DGDSAAA RYTE RM Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEVRM 127 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 +++A +L ++++ VDF Y+ + P V P+K PNLL NG SGIAVGMAT+IP HN+ Sbjct: 128 SKIAHELLADLEKETVDFVPNYDGTEQIPAVMPTKIPNLLVNGASGIAVGMATNIPPHNL 187 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ LA ID+ ISIE L+EYI GPDFPT II R I E+YR GRG +RAR Sbjct: 188 SEVINGCLAYIDDENISIEGLMEYIPGPDFPTAAII-NGRRGIEEAYRTGRGKIYLRARA 246 Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314 VE + G I+V EIPYQV K+RLIEKIAEL+ KR+ + +RDES +D +RIV+ Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K ++ ++++ +++ L+ ++ F +NM L G+ P+++ L IL+ ++ HRREV+ R Sbjct: 307 IKRDAVG-EVVLNNLYSLTQLQVTFGINMVALHQGQ-PKLLNLKDILQAFVRHRREVVTR 364 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVS------------ 419 R+ F ++ R IL+ L IA NID II +IR P K +V+ Sbjct: 365 RTIFELRKARDRAHILEALAIALANIDPIIEMIRRAPTPAEAKAALVAQAWDLGNVAAML 424 Query: 420 ----------------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457 ++ LTE Q AIL+LRL+ L LE ++ E LL Sbjct: 425 ERAGDDAARPEWLEPEFGIRDGKYHLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLTA 484 Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517 + +L + + I E+ +KE ++ GRR E++ + +I + Sbjct: 485 IAALIFILENPDRLMEVIREELVAIKEQYND----GRR----TEITANTSDINIEDLINQ 536 Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569 E + V +S++G+++ + + SA KE D + L A+T D IL S+ Sbjct: 537 EDVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSR 596 Query: 570 GKAYTLPAGNLL-SGRG-HGEAIQLLIDLNHNQDIVTAFV----YDSTCKLLVVSSKGNA 623 G+ Y + L + RG G I L+ L N+ I TA + Y+ + + ++ G Sbjct: 597 GRLYWMKVYQLPEASRGARGRPIVNLLPLEANERI-TAILPVREYEEGRHVFMATASGT- 654 Query: 624 FIVEESEIIANTR-KGKTFLKVSSEEKMKLV-VKVT--GDHVAVVGENRKLLIFSIDQIP 679 V+++ + +R + + V+ E +L+ V +T + V + N K++ F Q+ Sbjct: 655 --VKKTALTDFSRPRSAGIIAVNLNEGDELIGVDLTDGSNEVMLFSANGKVVRFPETQVR 712 Query: 680 EMSR-GKGVR 688 M R GVR Sbjct: 713 SMGRTATGVR 722 >gi|307720589|ref|YP_003891729.1| DNA gyrase subunit A [Sulfurimonas autotrophica DSM 16294] gi|306978682|gb|ADN08717.1| DNA gyrase subunit A [Sulfurimonas autotrophica DSM 16294] Length = 826 Score = 412 bits (1060), Expect = e-113, Method: Compositional matrix adjust. Identities = 276/775 (35%), Positives = 432/775 (55%), Gaps = 55/775 (7%) Query: 9 SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68 SN L +V+++++ L+ YL Y++S I RA+PD+RDG KPVHRRI++AM ++ L F Sbjct: 2 SNLLNNGDVQSINIEETLQNSYLDYSMSVIVGRALPDVRDGLKPVHRRILYAMDKLNLSF 61 Query: 69 GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128 GA +KKSARIVG+VIG+ HPHGD +VYD+LVR+AQ F R L+ GQGNFG++DGDSAAA Sbjct: 62 GAKYKKSARIVGDVIGQYHPHGDTAVYDALVRMAQDFSMRMELVDGQGNFGSVDGDSAAA 121 Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188 RYTEARMT+ A +L+ ++++ V+ D Y+ EP V P++ PNLL NG+SGIAVGMA Sbjct: 122 MRYTEARMTKYAGELLKDLEKNTVNMIDNYDGTTKEPDVMPTRVPNLLINGSSGIAVGMA 181 Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248 T+IP HN EI AL++NP I++ +++E+I PDFPTGGII ++ I+++Y GRG Sbjct: 182 TNIPPHNPTEIMNGLKALLENPNITLPEIMEHIKAPDFPTGGIIF-GKKGIMDAYETGRG 240 Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308 +VRA+ +E+ G IV+ E+PYQV K+RLIE +A L+ K I + +IRDES D Sbjct: 241 RIKVRAKTHIEKKGNRD-VIVIDELPYQVNKARLIENVANLVKDKMIDGVSEIRDESDRD 299 Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368 V+ R ++++ ++F + M+T F + M + + + P++ L ILK ++ HR Sbjct: 300 GMRVVIELKRDAISEIVLNNLFKQTSMQTTFGIIMLSI-LNQEPRIFGLIDILKHFINHR 358 Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTE 425 + ++ RR+ F ++ R IL+GL A ID++I +IR E+ K +VS F +E Sbjct: 359 KTIIIRRTIFDLEKAKARAHILEGLKKAIDIIDDVIRVIRASKTEEAAKENLVSEFDFSE 418 Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485 Q +I+ +RL L LE +I++EL L+ E ++S+L S IA E EV Sbjct: 419 IQAASIVAMRLGRLTGLEIEKIENELAELMKFIEYLESILKSEDVLHGIIAEEFDEVLTT 478 Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD------ 539 ++ +RRT + + +I EP+ V I++RG+I+ + S + Sbjct: 479 YTT-----KRRTEIEDDY---DDIDIEDLIPNEPMVVTITHRGYIKRVPLASYEKQKRGG 530 Query: 540 --LSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQL 592 +A+ E D ++ +T D +L ++ G K Y +P G S G+A+ Sbjct: 531 KGKTAVTTYEDDFIENFFTCNTHDTLLFVTDRGQLHWLKVYRIPEG---SRTAKGKAVVN 587 Query: 593 LIDLNHNQDI-----VTAFVYDSTCKLLVVSSKGNAFIVEESEI--IANTRKGKTFLKVS 645 LI+L ++ I T F D K LV +K IV+ + + +N R V Sbjct: 588 LINLQADEQIQSIIPTTDFSED---KSLVFFTKNG--IVKRTNLSEFSNIRSNGVRAIVL 642 Query: 646 SEEKMKLVVKVTGDHVA---VVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGG----I 697 + + K+ + +V + + + F I++ E R +GVR +K G Sbjct: 643 DDNDALITAKIADKSIKYLFIVTKLAQCIKFEIEKTREQGRSTRGVRGIKFKHEGDEVVD 702 Query: 698 SDVICFKICEGLTWIDSA-GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751 +++I E L + G+ + E L RGG G + K ++GK++ Sbjct: 703 ANIIASDDQEILIVAEKGIGKRTDAGEY----RLTNRGGSGVIAMKMTAKTGKYI 753 >gi|75761792|ref|ZP_00741727.1| DNA gyrase subunit A [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74490725|gb|EAO54006.1| DNA gyrase subunit A [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 448 Score = 412 bits (1060), Expect = e-113, Method: Compositional matrix adjust. Identities = 199/446 (44%), Positives = 307/446 (68%), Gaps = 5/446 (1%) Query: 9 SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68 S+ + ++ +++ + +L YA+S I RA+PD+RDG KPVHRR+++AM+++G+ Sbjct: 3 SDNQQQARIREINISHEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMNDLGITA 62 Query: 69 GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128 A+KKSARIVGEVIGK HPHGD +VY+++VR+AQ F QRY L+ G GNFG++DGDSAAA Sbjct: 63 DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSQRYMLVDGHGNFGSVDGDSAAA 122 Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188 RYTEARM++++ +++ + ++ +D++D Y+ + EP+V P++FPNLL NGT+GIAVGMA Sbjct: 123 MRYTEARMSKISMELIRDISKNTIDYQDNYDGSEREPIVLPARFPNLLVNGTTGIAVGMA 182 Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248 T+IP H + E+ + LAL NP+I+I +L+EYI GPDFPT G+I+ R I +Y GRG Sbjct: 183 TNIPPHQLGEVIDGVLALSHNPDITIAELMEYIPGPDFPTSGLIL-GRSGIRRAYETGRG 241 Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308 +RA+ +EE G I+VTE+PYQV K+RLIEKIAEL+ K+I + D+RDES + Sbjct: 242 SIMLRAKVEIEEKSNGKQSIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRN 301 Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368 ++ R + ++L+ +++ + ++T F +NM L G PQV+ L L +L H+ Sbjct: 302 GMRIVMEVRRDANANVLLNNLYKHTALQTSFGINMLSLVNGE-PQVLNLKQNLYHYLEHQ 360 Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTE 425 + V+ RR+++ ++ + R IL+GL IA ++DE+I +IR+ D K ++ RF L+E Sbjct: 361 KVVIRRRTAYELEKAEARAHILEGLRIALDHLDEVITLIRSSKTADIAKQGLMERFGLSE 420 Query: 426 NQVDAILNLRLRSLRKLEEYQIKSEL 451 Q AIL++RL+ L LE +I+ + Sbjct: 421 KQAQAILDMRLQRLTGLEREKIEQNI 446 >gi|294495526|ref|YP_003542019.1| DNA gyrase subunit A [Methanohalophilus mahii DSM 5219] gi|292666525|gb|ADE36374.1| DNA gyrase subunit A [Methanohalophilus mahii DSM 5219] Length = 824 Score = 412 bits (1060), Expect = e-113, Method: Compositional matrix adjust. Identities = 229/602 (38%), Positives = 363/602 (60%), Gaps = 29/602 (4%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 V V ++ ++ Y+ Y++S I RA+PD RDG KPVHRRI+H+M+E G+ A+KKSA Sbjct: 24 VVPVLIQDEMKRSYIDYSMSVIVGRALPDARDGLKPVHRRILHSMNEAGITHDKAYKKSA 83 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+V+GK HPHGD +VYDSLVR+ Q F RYPLI GQGNFG++DGDSAAA RYTE RM Sbjct: 84 RVVGDVLGKFHPHGDTAVYDSLVRMVQDFSLRYPLIDGQGNFGSVDGDSAAAMRYTEVRM 143 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 ++ +L+ + + VDF+ Y+ EP V PSK PNLL NG++GIAVGMAT++ HN+ Sbjct: 144 DKITTEMLEDIKKGTVDFKPNYDGSLEEPEVLPSKLPNLLLNGSTGIAVGMATNMAPHNL 203 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ +A + LID+PE + +L + + GPDFPTGGII+ + I +Y GR +RA Sbjct: 204 GEVVDATVKLIDDPETELAELRKIVKGPDFPTGGIIMGT-SGIKSAYETGRSPIYLRAVT 262 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316 +EE+ + IVV E+PYQV K+RL+E IA L+ K+I + D+RDES + V+ Sbjct: 263 EIEEMKNDKYRIVVYELPYQVNKARLVESIANLVRDKKIEGISDLRDESGREGMRVVIEL 322 Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376 ++ +P +L+ ++ + +ET F + +N+ + VP+V+ L +++ +L HR +V+ RR+ Sbjct: 323 KKAANPKVLLNQLYKQTQLETTFGI-INLALVDGVPRVLNLRELIQIYLKHRIDVISRRT 381 Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAILN 433 F ++ + R IL+GL +A NIDE+I +IR ++ + ++S F L E Q AIL+ Sbjct: 382 VFDLRKAEERAHILQGLKVALDNIDEVIKLIRGSSTTEEAREGLISNFDLDEIQAKAILD 441 Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493 ++L+ L LE +I E + L+ + +L + ++++ I E+ E+K+ + G Sbjct: 442 MKLQRLTGLERQKIDEEYNGLIDTIADLKDILANDERKYAIIRDEVLELKDKY------G 495 Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS--------ALHF 545 R T + SR + A + +I +E + V + G+I+++ + ++ + Sbjct: 496 DERRTLIQSSREELA--DEDLIPEEEVVVTSTQSGYIKNIPLQTYNMQHRGGRGVRGMET 553 Query: 546 KEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQ 600 KE D++ A T D IL + G K Y +P G S + G+AI L++L + Sbjct: 554 KEDDTVGSIFVASTHDYILFFTNRGKVYWQKVYDIPRG---SRQSRGKAIVNLLELAEGE 610 Query: 601 DI 602 + Sbjct: 611 SV 612 >gi|325687501|gb|EGD29522.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus sanguinis SK72] Length = 826 Score = 412 bits (1060), Expect = e-113, Method: Compositional matrix adjust. Identities = 235/615 (38%), Positives = 371/615 (60%), Gaps = 40/615 (6%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 + N+ V+L ++ ++ YA+S I RA+PD+RDG KPVHRRI++ M+E+G+ K Sbjct: 10 DRNLVNVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPEKPHK 69 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSARI G+V+GK HPHGD S+Y+++VR+AQ + RY L+ G GNFG++DGD AAA RYTE Sbjct: 70 KSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYTE 129 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 ARM+++A +L+ ++++ VD+ D Y+ + EPVV P++FPNLL NG +GIAVGMAT+IP Sbjct: 130 ARMSKIALEMLRDINKNTVDYIDNYDASEREPVVLPARFPNLLVNGATGIAVGMATNIPP 189 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E +A ++DNPE + ++E + GPDFPTG +++ + I +Y G+G +R Sbjct: 190 HNLGESIDAVKLVMDNPEATTRDIMEVLPGPDFPTGALVM-GKSGIHRAYETGKGSIVLR 248 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312 +R +EE+ G I+VTE PY V K+++ E I L+ KRI + +RDES E VR V Sbjct: 249 SRTEIEEMKNGRERIIVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVRFV 308 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 + + R +++ ++F L+ M+T F NM + G VP+++ L IL ++ H++EV+ Sbjct: 309 IEVR-RDASAHVILNNLFKLTQMQTNFSFNMLAIQNG-VPKILSLREILLAYIEHQKEVV 366 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLTENQVD 429 RR++F + + R IL GLLIA +IDE+I IIRN + + + ++++F L+E Q Sbjct: 367 TRRTAFDKEKAEARAHILAGLLIALDHIDEVIRIIRNSETDSEAQAELMAKFELSERQSQ 426 Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489 AIL++RLR L LE +I+SE D L+A + +L ++ I E+ EVK F+ + Sbjct: 427 AILDMRLRRLTGLERDKIQSEYDELIALIADLADILAKPERVIAIIKEELDEVKRKFADN 486 Query: 490 TDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSL--------KSHSVDL 540 RRT E+ + +L+ + +IE+ + + +SN+G+I+ L K + Sbjct: 487 -----RRT---ELMVGEVLSLEDEDLIEEADVLITLSNKGYIKRLNQAEFTAQKRGGRGV 538 Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLLSGRG 585 K+ D +K + T DR+L + G+ Y LP NLL Sbjct: 539 QGTGVKDDDFVKELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLK-LD 597 Query: 586 HGEAIQLLIDLNHNQ 600 GE IQ +I++ ++ Sbjct: 598 EGETIQTIINVQQDR 612 >gi|332360842|gb|EGJ38648.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus sanguinis SK49] Length = 826 Score = 412 bits (1060), Expect = e-113, Method: Compositional matrix adjust. Identities = 257/713 (36%), Positives = 409/713 (57%), Gaps = 52/713 (7%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 + N+ V+L ++ ++ YA+S I RA+PD+RDG KPVHRRI++ M+E+G+ K Sbjct: 10 DRNLVNVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPEKPHK 69 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSARI G+V+GK HPHGD S+Y+++VR+AQ + RY L+ G GNFG++DGD AAA RYTE Sbjct: 70 KSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYTE 129 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 ARM+++A +L+ ++++ VD+ D Y+ + EPVV P++FPNLL NG +GIAVGMAT+IP Sbjct: 130 ARMSKIALEMLRDINKNTVDYIDNYDASEREPVVLPARFPNLLVNGATGIAVGMATNIPP 189 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E +A ++DNPE + ++E + GPDFPTG +++ + I +Y G+G +R Sbjct: 190 HNLGESIDAVKLVMDNPEATTRDIMEVLPGPDFPTGALVM-GKSGIHRAYETGKGSIVLR 248 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312 +R +EE+ G IVVTE PY V K+++ E I L+ KRI + +RDES E VR V Sbjct: 249 SRTEIEEMKNGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVRFV 308 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 + + R +++ ++F L+ M+T F NM + G VP+++ L IL ++ H++EV+ Sbjct: 309 IEVR-RDASAHVILNNLFKLTQMQTNFSFNMLAIQNG-VPKILSLREILLAYIEHQKEVV 366 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVD 429 RR+ F + + R IL GLLIA +IDE+I IIRN + + + ++++F L+E Q Sbjct: 367 TRRTVFDKEKAEARAHILAGLLIALDHIDEVIRIIRNSETDAEAQAELMAKFELSERQSQ 426 Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489 AIL++RLR L LE +I+SE D L+A + +L ++ I E+ EVK F+ Sbjct: 427 AILDMRLRRLTGLERDKIQSEYDELIALIADLADILAKPERVIAIIKEELDEVKRKFADD 486 Query: 490 TDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSL--------KSHSVDL 540 RRT E+ + +L+ + +IE+ + + +SN+G+I+ L K + Sbjct: 487 -----RRT---ELMVGEVLSLEDEDLIEEADVLITLSNKGYIKRLNQAEFTAQKRGGRGV 538 Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLLSGRG 585 K+ D +K + T DR+L + G+ Y LP NLL Sbjct: 539 QGTGVKDDDFVKELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLK-LD 597 Query: 586 HGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK-GKTFLKV 644 GE IQ +I++ ++ ++++ +T +V + F AN R+ G L + Sbjct: 598 EGETIQTIINVQQDRSD-DSYLFFTTRHGVVKRTSVTEF--------ANIRQNGLKALNL 648 Query: 645 SSEEKMKLVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSR-GKGVRLQSYKDG 695 E+++ V G ++G + F+ + MSR GVR + +DG Sbjct: 649 KDEDELINVFLTDGAADVIIGTKFGYSVRFNETAVRSMSRIATGVRGVNLRDG 701 >gi|261222265|ref|ZP_05936546.1| conserved hypothetical protein [Brucella ceti B1/94] gi|260920849|gb|EEX87502.1| conserved hypothetical protein [Brucella ceti B1/94] Length = 922 Score = 412 bits (1060), Expect = e-113, Method: Compositional matrix adjust. Identities = 254/679 (37%), Positives = 378/679 (55%), Gaps = 61/679 (8%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 ++ +S+ ++ YL YA+S I RA+PD+RDG KPVHRRI+HAM+EM L + ++KSA Sbjct: 12 IEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAMNEMNLAYNRPYRKSA 71 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 +VGEV+GK HPHGD S+YD+LVR+AQ F R PLI GQGNFG+IDGD AA RYTE R+ Sbjct: 72 GVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLIDGQGNFGSIDGDPPAAMRYTECRL 131 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 +V E +L +D+D V+F+D Y+ + EPVV P++FPNLL NG+ GIAVGMAT+I HN+ Sbjct: 132 EKVTESLLSDIDKDTVNFQDNYDGREQEPVVLPARFPNLLVNGSGGIAVGMATNILPHNL 191 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ + +ALIDNP I + +L+E I GPDFPTGGII+ R I +Y GRG +R R Sbjct: 192 GEVIDGCVALIDNPAIELSELMELIPGPDFPTGGIIL-GRNGINSAYTTGRGSVIMRGRA 250 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316 +E + I++TEIPYQV K+ +IEK+AEL+ KRI + D+RDES + V+ Sbjct: 251 TIEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKRIDGISDLRDESDREGYRVVVEL 310 Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376 R D+++ ++ + ++T F NM L+ G+ Q+ LD +L+ ++A R EV+ RR+ Sbjct: 311 KRDAVADVVLNQLYRYTPLQTSFGCNMVALNGGKPEQLTLLD-MLRAFVAFREEVVTRRT 369 Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP----KPVMVSR------------ 420 F + R +L GL IA NIDE+IA+IR P + +M R Sbjct: 370 KFLLNKARDRAHVLVGLAIAVANIDEVIALIRRAPDPATAREQLMERRWPAVDVAPLIRL 429 Query: 421 -------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467 ++L+E Q AIL+LRL+ L L ++ EL+ + E +L S Sbjct: 430 IDDPRHTLNEDNTYNLSEEQARAILDLRLQRLTALGRDEVADELNKIGEEIRDYLDILGS 489 Query: 468 GKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNR 527 + N + E+ V++ F+ RRT E+ + +I +E + V +S+ Sbjct: 490 RLRVMNIVKEEMIAVRDEFATP-----RRT---EIGFGGAEMDDEDLIAREDMVVTVSHA 541 Query: 528 GWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYT 574 G+I R+ + S + KE D + A+T +L S+ G K + Sbjct: 542 GYIKRVPLTTYRAQRRGGKGRSGMATKEEDFVTRLFVANTHTPVLFFSSRGIVYKEKVWR 601 Query: 575 LPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY----DSTCKLLVV--SSKGNAFIVEE 628 LP G S G+A+ ++ L + I T DS L V+ +++G + Sbjct: 602 LPVGTPQS---RGKALINMLPLQQGERITTIMPLPEDEDSWANLDVMFSTTRGTVRRNKL 658 Query: 629 SEIIANTRKGKTFLKVSSE 647 S+ + R GK +K+ E Sbjct: 659 SDFVQVNRNGKIAMKLEDE 677 >gi|313678347|ref|YP_004056087.1| DNA gyrase subunit A [Mycoplasma bovis PG45] gi|312950356|gb|ADR24951.1| DNA gyrase, A subunit [Mycoplasma bovis PG45] Length = 919 Score = 412 bits (1060), Expect = e-113, Method: Compositional matrix adjust. Identities = 224/560 (40%), Positives = 347/560 (61%), Gaps = 22/560 (3%) Query: 30 YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89 +L YA+S I RA+PD RDG KPVHRRI++ MSE+G+ G +KSARIVG+V+GK HPH Sbjct: 88 FLDYAMSVIVSRALPDARDGLKPVHRRILYDMSELGITSGTQHRKSARIVGDVLGKYHPH 147 Query: 90 GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDE 149 GD SVY+++VR+AQ F RYPLI G GNFG+IDGD AAA RYTEARM++VA L+L+G+ + Sbjct: 148 GDSSVYEAMVRMAQDFSMRYPLIDGHGNFGSIDGDQAAAMRYTEARMSKVATLMLEGIKK 207 Query: 150 DAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDN 209 D VDF D Y+ + EP V PS+FPNLL +G SGIAVGMATSIP HN+ E +A +AL N Sbjct: 208 DTVDFVDNYDATEKEPSVLPSRFPNLLVSGGSGIAVGMATSIPPHNLAETIDATIALARN 267 Query: 210 PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIV 269 PEI+I +++E++ GPDFPTG +I+ ++ I E+Y G+G VR+ +E + G I+ Sbjct: 268 PEITIAEIMEFLPGPDFPTGAMIMGTK-GIKEAYETGKGSISVRSIAKIEHLHNGKSRII 326 Query: 270 VTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKNRSLDPDLLMES 328 V+EIPY+++K+ +IEKIA+L+ K I + D+RDES + +RI++ K + P++++ Sbjct: 327 VSEIPYEIKKTLIIEKIAQLMKDKTIDGVADLRDESNRNGIRIIIDIKKGEV-PEIILNK 385 Query: 329 IFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVE 388 ++ + +++ + +N L G P+++ + L+ +L H+ V+ RR F + R+ Sbjct: 386 LYRQTPLQSNYNVNFVALVDGE-PKLLNIKYALEVYLKHQENVVTRRLKFDLNKAQDRMH 444 Query: 389 ILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVDAILNLRLRSLRKLEEY 445 IL+GL +A NIDE+I II++ + + +RF+L+E Q AI+++RL L L Sbjct: 445 ILEGLKLAVENIDEVIKIIKSSKTDQDAQNNLSARFNLSEKQTKAIVDMRLGRLTGLAID 504 Query: 446 QIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRA 505 + E+ NL AE E+I S+L+ K I E+ E+K F+ RRT + A Sbjct: 505 SMIEEMKNLSAEIERIISILSDKKLLTELIIDELTEIKNKFADD-----RRTVIDKNLSA 559 Query: 506 DKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSVDLSALHFKEGDSLKIALHA 557 + + +I K I + S +G+++ + + V ++ + D + + Sbjct: 560 --SIDDEDLITKRDIVITTSTKGYVKRIDLEEYKTQRRGGVGITTMKTYNDDDIASIITT 617 Query: 558 HTTDRILLLSTDGKAYTLPA 577 T +L+ + G+ Y + A Sbjct: 618 TTHTDLLIFTNHGRVYRIRA 637 >gi|127512877|ref|YP_001094074.1| DNA gyrase, A subunit [Shewanella loihica PV-4] gi|126638172|gb|ABO23815.1| DNA gyrase subunit A [Shewanella loihica PV-4] Length = 879 Score = 412 bits (1060), Expect = e-113, Method: Compositional matrix adjust. Identities = 278/737 (37%), Positives = 421/737 (57%), Gaps = 72/737 (9%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 ++ +++ L+ YL YA+S I RA+PD+RDG KPVHRR++ AM+E+ D+ +KKS Sbjct: 7 SITPINIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELKNDWNKPYKKS 66 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 AR+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG++DGD+AAA RYTE R Sbjct: 67 ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSMRYTLVDGQGNFGSVDGDAAAAMRYTEIR 126 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 M ++A +L ++++ VD+ Y+ + P V P++ P LL NG+SGIAVGMAT+IP HN Sbjct: 127 MDKLAHQLLADLEKETVDYVPNYDGTEQIPAVLPTRIPALLVNGSSGIAVGMATNIPPHN 186 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 + E+ LALID P +SIE+L+E+I GPDFPT IV R+ I ++Y+ GRG +RAR Sbjct: 187 LSEVISGCLALIDEPSLSIEQLMEHIPGPDFPTAA-IVNGRKGIEDAYKTGRGKAVMRAR 245 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314 VE G I+VTEIPYQV K+RLIEKIAEL+ K+I + +RDES +D +RIV+ Sbjct: 246 ATVETEDNGRERIIVTEIPYQVNKARLIEKIAELVKDKKIEGISGLRDESDKDGMRIVIE 305 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K R ++++ +++ + ++T F +NM L+ G+ P++ L +L+ ++ HRREV+ R Sbjct: 306 VK-RGEVGEVILNNLYAQTQLQTSFGINMVALTNGQ-PKLFNLKEMLECFILHRREVVTR 363 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----------- 420 R+ F ++ R IL+ L IA NID IIA+I+ P K +VS+ Sbjct: 364 RTVFELRKARERAHILEALAIALANIDPIIALIKASPTPAEAKTKLVSQGWALGNVQGML 423 Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457 + LTE Q AIL+LRL L LE +I SE + LL Sbjct: 424 EKAGDDAARPEWLSAEFGIRDGLYYLTEQQAQAILDLRLHKLTGLEHEKILSEYEELLEL 483 Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517 + +L S ++ I E++EV E+F G R T S D + + +I + Sbjct: 484 IAALLYILRSPERLMEVIKEELQEVLEVF------GDERRTELNASAVDISL--EDLINE 535 Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569 E + V +S+ G+ + + + +A K+ D ++ L A+T D IL S Sbjct: 536 EDVVVTLSHLGYAKYQPLSDYQAQRRGGKGKAATKVKDEDFVEKLLVANTHDTILCFSDF 595 Query: 570 GKAYTLPAGN--LLSGRGHGEAIQLLIDLNHNQDIVTAFV----YDSTCKLLVVSSKGNA 623 GK Y L L S + G I L+ L + I TA + YD+ +++ +S G Sbjct: 596 GKMYWLKVYQLPLASRQARGRPIINLLPLAEGERI-TAILPVREYDADKYVIMATSHGT- 653 Query: 624 FIVEESEIIANTR-KGKTFLKVSSEEKMKLV-VKVT-GDHVAVVGENR-KLLIFSIDQIP 679 V+++ + +R + + V+ ++ +L+ V +T GD+ ++ N K++ FS DQ+ Sbjct: 654 --VKKTSLDQYSRPRANGIIAVNLKDGDQLIGVDITNGDNEVMLFSNEGKVVRFSEDQVR 711 Query: 680 EMSR-GKGVRLQSYKDG 695 M R GVR +DG Sbjct: 712 GMGRTATGVRGIKLEDG 728 >gi|307129982|ref|YP_003881998.1| DNA gyrase subunit A [Dickeya dadantii 3937] gi|306527511|gb|ADM97441.1| DNA gyrase subunit A [Dickeya dadantii 3937] Length = 877 Score = 412 bits (1059), Expect = e-112, Method: Compositional matrix adjust. Identities = 245/606 (40%), Positives = 360/606 (59%), Gaps = 58/606 (9%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + V++ L+ YL YA+S I RA+PD+RDG KPVHRR+++AMS +G D+ +KKSA Sbjct: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSVLGNDWNKPYKKSA 67 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG+IDGDSAAA RYTE RM Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVRM 127 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 +++A +L ++++ VDF Y+ + P V P++ PNLL NG+SGIAVGMAT+IP HN+ Sbjct: 128 SKIAHELLSDLEKETVDFVPNYDGTEQIPDVMPTRIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ + LA ID+ IS+E L+ +I GPDFPT II + I E+YR GRG +RAR Sbjct: 188 SEVIDGCLAYIDDENISVEGLMTHIPGPDFPTAAII-NGKRGIEEAYRTGRGKVYIRARA 246 Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314 VE + G I+V EIPYQV K+RLIEKIAEL+ KRI + +RDES +D +RIV+ Sbjct: 247 EVEADAKSGRETIIVHEIPYQVNKARLIEKIAELVKEKRIEGISALRDESDKDGMRIVIE 306 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K ++ ++++ ++ + M+ F +NM L G+ P++M L IL ++ HRREV+ R Sbjct: 307 IKRDAVG-EVVLNHLYSQTQMQVSFGINMVALHQGQ-PKLMTLKEILSAFVRHRREVVTR 364 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----------- 420 R+ F ++ R IL+GL IA NID II +IR+ P K +V++ Sbjct: 365 RTIFELRKARERAHILEGLAIALANIDPIIELIRHASTPADAKAALVAQAWALGGVAAML 424 Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457 + LTE Q AIL+LRL+ L LE ++ E LLA+ Sbjct: 425 ERAGDDAARPEWLEPEFGIHDGYYHLTELQAQAILDLRLQKLTGLEHEKLLDEYKELLAQ 484 Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517 ++ +L S ++ I E+ ++E ++ + RRT E++ + +I + Sbjct: 485 IAELLFILRSPERLMEVIREELVAIREQYNDA-----RRT---EITHNSADINIEDLISQ 536 Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569 E + V +S++G+++ + + SA KE D + L A+T D IL S+ Sbjct: 537 ENVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSR 596 Query: 570 GKAYTL 575 G+ Y L Sbjct: 597 GRLYWL 602 >gi|325689662|gb|EGD31666.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus sanguinis SK115] Length = 826 Score = 412 bits (1059), Expect = e-112, Method: Compositional matrix adjust. Identities = 257/713 (36%), Positives = 409/713 (57%), Gaps = 52/713 (7%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 + N+ V+L ++ ++ YA+S I RA+PD+RDG KPVHRRI++ M+E+G+ K Sbjct: 10 DRNLVNVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPEKPHK 69 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSARI G+V+GK HPHGD S+Y+++VR+AQ + RY L+ G GNFG++DGD AAA RYTE Sbjct: 70 KSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYTE 129 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 ARM+++A +L+ ++++ VD+ D Y+ + EPVV P++FPNLL NG +GIAVGMAT+IP Sbjct: 130 ARMSKIALEMLRDINKNTVDYIDNYDASEREPVVLPARFPNLLVNGATGIAVGMATNIPP 189 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E +A ++DNPE + ++E + GPDFPTG +++ + I +Y G+G +R Sbjct: 190 HNLGESIDAVKLVMDNPEATTRDIMEVLPGPDFPTGALVM-GKSGIHRAYETGKGSIVLR 248 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312 +R +EE+ G IVVTE PY V K+++ E I L+ KRI + +RDES E VR V Sbjct: 249 SRTEIEEMKNGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVRFV 308 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 + + R +++ ++F L+ M+T F NM + G VP+++ L IL ++ H++EV+ Sbjct: 309 IEVR-RDTSAHVILNNLFKLTQMQTNFSFNMLAIQNG-VPKILSLREILLAYIEHQKEVV 366 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVD 429 RR+ F + + R IL GLLIA +IDE+I IIRN + + + ++++F L+E Q Sbjct: 367 TRRTVFDKEKAEARAHILAGLLIALDHIDEVIRIIRNSETDAEAQAELMAKFELSERQSQ 426 Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489 AIL++RLR L LE +I+SE D L+A + +L ++ I E+ EVK F+ Sbjct: 427 AILDMRLRRLTGLERDKIQSEYDELIALIADLADILAKPERVIAIIKEELDEVKRKFADD 486 Query: 490 TDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSL--------KSHSVDL 540 RRT E+ + +L+ + +IE+ + + +SN+G+I+ L K + Sbjct: 487 -----RRT---ELMVGEVLSLEDEDLIEEADVLITLSNKGYIKRLNQAEFTAQKRGGRGV 538 Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLLSGRG 585 K+ D +K + T DR+L + G+ Y LP NLL Sbjct: 539 QGTGVKDDDFVKELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLK-LD 597 Query: 586 HGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK-GKTFLKV 644 GE IQ +I++ ++ ++++ +T +V + F AN R+ G L + Sbjct: 598 EGETIQTIINVQQDRSD-DSYLFFTTRHGVVKRTSVTEF--------ANIRQNGLKALNL 648 Query: 645 SSEEKMKLVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSR-GKGVRLQSYKDG 695 E+++ V G ++G + F+ + MSR GVR + +DG Sbjct: 649 KDEDELINVFLTDGAADVIIGTKFGYSVRFNETAVRSMSRIATGVRGVNLRDG 701 >gi|255532057|ref|YP_003092429.1| DNA gyrase subunit A [Pedobacter heparinus DSM 2366] gi|255345041|gb|ACU04367.1| DNA gyrase, A subunit [Pedobacter heparinus DSM 2366] Length = 869 Score = 412 bits (1059), Expect = e-112, Method: Compositional matrix adjust. Identities = 245/652 (37%), Positives = 383/652 (58%), Gaps = 42/652 (6%) Query: 14 EENVKAVSLRFALEER--YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71 +EN K + + + R Y+ Y++S I RA+PD+RDG KPVHRR+++ M ++GL Sbjct: 8 QENDKIIRIDIDEQMRSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMLDLGLANNKP 67 Query: 72 FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131 +KKSARIVGEV+GK HPHGD SVY+++VR+AQ + RY ++ GQGN+G+IDGDS AA RY Sbjct: 68 YKKSARIVGEVLGKYHPHGDASVYNTMVRMAQEWSLRYLMVEGQGNYGSIDGDSPAAMRY 127 Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191 TEAR ++AE +L +++D VDF+ +++ EP V PSK PNLL NG+SGIAVGMAT++ Sbjct: 128 TEARFQKIAEDMLADINKDTVDFQLNFDDSLQEPTVLPSKVPNLLINGSSGIAVGMATNM 187 Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251 P HN+ E A +A IDN EI+I +L+++I PDFPTG II + E++ GRG Sbjct: 188 PPHNITETINATIAYIDNNEITIAELMKFIKAPDFPTGAIIY-GYTGVQEAFETGRGRIV 246 Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311 +RA+ + E + I+VTEIPYQV K+++IE+ AEL+ K++ + +I+DES +D Sbjct: 247 MRAKAEI-EAAKDREVIIVTEIPYQVNKAQMIERTAELVGEKKLEGISNIKDESNKDGIR 305 Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371 +++ R + +++ ++F + ++T F +N L GR PQ++ L ++ ++ HR EV Sbjct: 306 IVYEIKRDANASIVLNNLFKQTALQTSFSVNNIALVKGR-PQLLNLRDLIHYFVEHRHEV 364 Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQV 428 + RR+ F + +R IL+GLLIA ++DE+I +IR+ D P+ ++ +F L++ Q Sbjct: 365 VVRRTKFELAEAKKRAHILEGLLIALDHLDEVIKLIRSSDTPEDARTGLMEKFGLSDIQA 424 Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488 AIL++ LR L LE +IK E + L+ E + S+L+ ++ I E+ E+KE + Sbjct: 425 RAILDMTLRRLTGLERDKIKDEYNELMKTIEYLQSILDDESKRMQIIKDELTEMKEKYGD 484 Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDL 540 RRTT V A+ +++ IE E + + IS+ G+I R+ Sbjct: 485 E-----RRTTI--VHSAEDMSMED-FIEDEEVVITISHEGYIKRTPATEYRTQGRGGKGS 536 Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKA-----YTLPAGNLLSGRGHGEAIQLLID 595 + D ++ L A + +L + G+ Y +P G LS G AIQ +I+ Sbjct: 537 KGSDSRNEDFIEHLLIASNHNYMLFFTETGRCFWLRVYEIPEGTRLS---KGRAIQNIIN 593 Query: 596 LNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE 647 + + I AF+ K + +E + II T+KG T K S E Sbjct: 594 IPKEEKI-KAFIKVKNLK--------DQEYLENNYIIMCTKKG-TIKKTSLE 635 >gi|238761953|ref|ZP_04622926.1| DNA gyrase subunit A [Yersinia kristensenii ATCC 33638] gi|238699681|gb|EEP92425.1| DNA gyrase subunit A [Yersinia kristensenii ATCC 33638] Length = 888 Score = 412 bits (1059), Expect = e-112, Method: Compositional matrix adjust. Identities = 252/636 (39%), Positives = 372/636 (58%), Gaps = 60/636 (9%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + V++ L+ YL YA+S I RA+PD+RDG KPVHRR++ AM+ +G D+ +KKSA Sbjct: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSA 67 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG++DGDSAAA RYTE RM Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRM 127 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 +++A +L +++D VDF Y+ + P V P+K PNLL NG+SGIAVGMAT+IP HN+ Sbjct: 128 SKIAHELLADLEKDTVDFVPNYDGTEQIPAVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ + LA I++ I+IE L+EYI GPDFPT II R I E+YR GRG VRAR Sbjct: 188 SEVIDGCLAYIEDENITIEGLMEYIPGPDFPTAAII-NGRRGIEEAYRTGRGKIYVRARA 246 Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314 VE + G I+V EIPYQV K+RLIEKIAEL+ KR+ + +RDES +D +RIV+ Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K ++ ++++ +++ L+ ++ F +NM LS G+ P+++ L IL ++ HRREV+ R Sbjct: 307 IKRDAVG-EVVLNNLYSLTQLQVTFGINMVALSQGQ-PKLLNLKDILVAFVRHRREVVTR 364 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-------------------------- 408 R+ F ++ R IL+ L IA NID II +IR Sbjct: 365 RTIFELRKARDRAHILEALAIALANIDPIIELIRRAATPAEAKAGLIASPWELGNVASML 424 Query: 409 ---NEDKPKP--------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457 +D +P + ++ LTE Q AIL+LRL+ L LE ++ E LL Sbjct: 425 ERAGDDAARPEWLEEEFGIRDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLTV 484 Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517 ++ +L + ++ I E+ +KE+++ + RRT E++ + +I + Sbjct: 485 IGELIFILENPERLMEVIREELVAIKELYNDA-----RRT---EITANTSDINIEDLINQ 536 Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569 E + V +S++G+++ + + SA KE D + L A+T D IL S+ Sbjct: 537 EDVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSR 596 Query: 570 GKAYTLPAGNLL-SGRG-HGEAIQLLIDLNHNQDIV 603 G+ Y + L + RG G I L+ L N+ I Sbjct: 597 GRLYWMKVYQLPEASRGARGRPIVNLLPLEPNERIT 632 >gi|259415725|ref|ZP_05739645.1| DNA gyrase, A subunit [Silicibacter sp. TrichCH4B] gi|259347164|gb|EEW58941.1| DNA gyrase, A subunit [Silicibacter sp. TrichCH4B] Length = 928 Score = 412 bits (1059), Expect = e-112, Method: Compositional matrix adjust. Identities = 250/681 (36%), Positives = 383/681 (56%), Gaps = 58/681 (8%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 VS+ + YL YA+S I RAIPDLRDG KPVHRRI++AM E G A++KSAR V Sbjct: 42 VSIESEMRNSYLDYAMSVIVSRAIPDLRDGLKPVHRRILYAMHETGNSHDKAYRKSARPV 101 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+V+GK HPHGD ++YD+LVR+AQ F PL+ GQGNFG++DGD+ AA RYTE RM + Sbjct: 102 GDVMGKYHPHGDSAIYDALVRMAQDFSMSLPLLDGQGNFGSMDGDNPAAMRYTEVRMDKP 161 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A +L ++++ VDF+D Y+ +D EP V P++FPN+L NG GIAVGMAT+IP HN+ E+ Sbjct: 162 AAFMLADIEKETVDFQDNYDGKDKEPTVLPARFPNMLVNGAGGIAVGMATNIPPHNLGEV 221 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 +A LALI++P+++ E+L++Y+ GPDFPTGG+++ R ++Y GRG +RA+ VE Sbjct: 222 VDATLALIEDPDLTSEQLIDYVPGPDFPTGGVML-GRSGARKAYLEGRGSVIIRAKTRVE 280 Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKNR 318 E+ + + IVV EIPYQV K+ +IEKIAE + KRI + ++DES + VR+V+ K R Sbjct: 281 EIRKDRYAIVVDEIPYQVNKASMIEKIAEQVREKRIEGVAHVQDESDRNGVRVVVELK-R 339 Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378 ++++ ++ + M+T F NM L+ GR P+ + L L ++ R +V+ RR+++ Sbjct: 340 DATAEVVLNQLYRFTPMQTSFGCNMLALNGGR-PEQLTLRKFLTSFIDFREDVVARRTAY 398 Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---------------------------D 411 ++ R IL GL +A N+DE++A IR+ D Sbjct: 399 NLRKARERSHILCGLAVAVSNVDEVVATIRSSADAAEARQKLMTRRWPASDIAGYIRLID 458 Query: 412 KPKPVMV--SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGK 469 P M ++L+E Q AIL LRL+ L +L ++ EL+ L A+ ++ +L+S + Sbjct: 459 DPTHTMNDDGTYNLSEVQARAILELRLQRLTQLGVKEVTDELEELAAKIKEYLEILSSRE 518 Query: 470 QQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW 529 + IA E+ EV+ F+ RRT + S + +IE+E + V +++ G+ Sbjct: 519 RIMGIIADELTEVRNSFAVP-----RRTEIVDWS---GDMDDEDLIEREDMVVTVTSGGY 570 Query: 530 I--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL 581 I R+ K LS + KE D + A+T ++L +TDG Y L L Sbjct: 571 IKRTPLADFRAQKRGGKGLSGMQTKEEDVVTTLFVANTHTQLLFFTTDGMVYKLKTWRLP 630 Query: 582 SG--RGHGEAIQLLIDLNHNQDIVTAFVYD------STCKLLVVSSKGNAFIVEESEIIA 633 G G+AI ++ + I D + +++ +S G S+ Sbjct: 631 QGGRTAKGKAIVNILPIPTGVSIAAIMPVDRAEEEWNDLQIMFATSAGTVRRNRLSDFTN 690 Query: 634 NTRKGKTFLKVSSE-EKMKLV 653 R GK +K + E KL+ Sbjct: 691 VMRNGKIAMKFEDDNEGTKLI 711 >gi|239904643|ref|YP_002951381.1| DNA gyrase subunit A [Desulfovibrio magneticus RS-1] gi|239794506|dbj|BAH73495.1| DNA gyrase subunit A [Desulfovibrio magneticus RS-1] Length = 813 Score = 412 bits (1059), Expect = e-112, Method: Compositional matrix adjust. Identities = 237/596 (39%), Positives = 360/596 (60%), Gaps = 27/596 (4%) Query: 26 LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85 L++ YL Y+LS I RAIPD+RDG KPVHRRI++AM ++ + +KKSAR+VG+VIGK Sbjct: 11 LKKSYLEYSLSVIIGRAIPDVRDGLKPVHRRILYAMHDLSNTYNRPYKKSARVVGDVIGK 70 Query: 86 LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145 HPHGDQSVYD+LVR+AQ F R ++ GQGNFG+IDGD+AAA RYTE RM+++A L Sbjct: 71 YHPHGDQSVYDALVRMAQDFSMRDAIVDGQGNFGSIDGDAAAAMRYTEVRMSRLAGEFLA 130 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 ++++ VDFR Y+ EP V P+K PNLL NG+SGIAVGMAT+IP HN+ E+C+ L Sbjct: 131 DIEKETVDFRPNYDNSLEEPAVLPTKVPNLLLNGSSGIAVGMATNIPPHNLGELCDGLLH 190 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265 L+D P + ++ + GPDFPTG I + + E+Y GRG ++R R VEE + Sbjct: 191 LLDTPSCPVTDIIGLVKGPDFPTGAAIYGGK-GLTEAYTTGRGTIKIRGRAEVEERKKDY 249 Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFPKNRSLDPDL 324 +V+ EIPY + KS L+EKIA LI RI + D+RDES + +RIVL K + + PD+ Sbjct: 250 VSVVIREIPYALNKSSLVEKIAALINDGRIEGVSDLRDESDRKGIRIVLDLK-KGVIPDI 308 Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384 ++ +++ + +ET F +NM V++ R P ++ + +L+ +L HRR+V+ RR+ F ++ + Sbjct: 309 VINALYKYTPLETSFGINMLVVADNR-PALLNIKQVLEHFLTHRRDVILRRTRFDLRKSE 367 Query: 385 RRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAILNLRLRSLRK 441 R IL+GL IA NIDE+++IIR N + + ++ RF L+E Q AIL++RL+ L Sbjct: 368 ERAHILEGLRIALDNIDEVVSIIRASKNAVEARERLMERFGLSERQAQAILDMRLQRLTN 427 Query: 442 LEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCE 501 LE ++ E + L+ E + S+L + + I EI+E+++ ++ R+T E Sbjct: 428 LERQKLIDEYNELIKLIEYLRSILENDEVLRGVIRDEIKEIQDRYATP-----RKTEILE 482 Query: 502 VSRADKATLQ-QAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK-------EGDSLKI 553 D + +I E + + +S RG+I+ K + K GD Sbjct: 483 ----DLEGINILDLIPDEDVVITLSRRGYIKRTKIDNYQQQKRGGKGIAGVATAGDDFVQ 538 Query: 554 ALHAHTTDRILLLSTD-GKAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAF 606 + A T + LLL T+ G+ + LP + G+ G I L+ ++ + + TA Sbjct: 539 SFCATTNHQQLLLFTNLGRMFMLPVHQIPEGQRTAKGAHIANLLPMDKEEFVATAL 594 >gi|270292591|ref|ZP_06198802.1| DNA gyrase, A subunit [Streptococcus sp. M143] gi|270278570|gb|EFA24416.1| DNA gyrase, A subunit [Streptococcus sp. M143] Length = 827 Score = 412 bits (1059), Expect = e-112, Method: Compositional matrix adjust. Identities = 234/611 (38%), Positives = 370/611 (60%), Gaps = 40/611 (6%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 ++N+ V+L ++ ++ YA+S I RA+PD+RDG KPVHRRI++ M+E+G+ K Sbjct: 8 DKNLVNVNLTKEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHK 67 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSARI G+V+GK HPHGD S+Y+++VR+AQ + RY L+ G GNFG++DGD AAA RYTE Sbjct: 68 KSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYTE 127 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 ARM+++A +L+ ++++ VDF D Y+ + EP+V P++FPNLL NG +GIAVGMAT+IP Sbjct: 128 ARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIPP 187 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E +A ++DNPE++ + L+E + GPDFPTG +++ + I ++Y G+G +R Sbjct: 188 HNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVM-GKSGIHKAYETGKGSIVLR 246 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312 +R +E G IVVTE PY V K+++ E I L+ KR+ + +RDES E VR V Sbjct: 247 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRLEGITAVRDESNREGVRFV 306 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 + K R ++++ ++F ++ M+T F NM + G VP+++ L IL ++ H++EV+ Sbjct: 307 IEVK-RDASANVILNNLFKMTQMQTNFGFNMLAIQNG-VPKILSLRQILDAYIEHQKEVV 364 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVD 429 RR+ F + + R IL+GLLIA +IDE+I IIR + + + ++S+F L+E Q Sbjct: 365 VRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSKFRLSERQSQ 424 Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489 AIL++RLR L LE +I+SE D L+A + +L ++ I E+ EVK F Sbjct: 425 AILDMRLRRLTGLERDKIQSEYDELIALIADLADILVKPERVAQIIKEELDEVKRKFGD- 483 Query: 490 TDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSL--------KSHSVDL 540 +RRT E+ + TL+ + +IE+ + + +SN+G+I+ L K + Sbjct: 484 ----KRRT---ELMVGEVLTLEDEDLIEETDVLITLSNKGYIKRLDQGEFTAQKRGGRGV 536 Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLLSGRG 585 K+ D ++ + T D +L + G+ Y LP NLL Sbjct: 537 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLK-LD 595 Query: 586 HGEAIQLLIDL 596 GE+IQ +I++ Sbjct: 596 EGESIQTIINV 606 >gi|323351532|ref|ZP_08087186.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus sanguinis VMC66] gi|322122018|gb|EFX93744.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus sanguinis VMC66] Length = 826 Score = 412 bits (1059), Expect = e-112, Method: Compositional matrix adjust. Identities = 235/615 (38%), Positives = 370/615 (60%), Gaps = 40/615 (6%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 + N+ V+L ++ ++ YA+S I RA+PD+RDG KPVHRRI++ M+E+G+ K Sbjct: 10 DRNLVNVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPEKPHK 69 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSARI G+V+GK HPHGD S+Y+++VR+AQ + RY L+ G GNFG++DGD AAA RYTE Sbjct: 70 KSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYTE 129 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 ARM+++A +L+ ++++ VD+ D Y+ + EPVV P++FPNLL NG +GIAVGMAT+IP Sbjct: 130 ARMSKIALEMLRDINKNTVDYIDNYDASEREPVVLPARFPNLLVNGATGIAVGMATNIPP 189 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E +A ++DNPE + ++E + GPDFPTG +++ + I +Y G+G +R Sbjct: 190 HNLGESIDAVKLVMDNPEATTRDIMEVLPGPDFPTGALVM-GKSGIHRAYETGKGSIVLR 248 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312 +R +EE+ G I+VTE PY V K+++ E I L+ KRI + +RDES E VR V Sbjct: 249 SRTEIEEMKNGRERIIVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVRFV 308 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 + + R +++ ++F L+ M+T F NM + G VP+++ L IL ++ H++EV+ Sbjct: 309 IEVR-RDASAHVILNNLFKLTQMQTNFSFNMLAIQNG-VPKILSLREILLAYIEHQKEVV 366 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVD 429 RR++F + + R IL GLLIA +IDE+I IIRN + + + ++++F L+E Q Sbjct: 367 TRRTAFDKEKAEARAHILAGLLIALDHIDEVIRIIRNSETDAEAQAELMAKFELSERQSQ 426 Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489 AIL++RLR L LE +I+SE D L+A + +L ++ I E+ EVK F+ Sbjct: 427 AILDMRLRRLTGLERDKIQSEYDELIALIADLADILAKPERVIAIIKEELDEVKRKFADD 486 Query: 490 TDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSL--------KSHSVDL 540 RRT E+ + +L+ + +IE+ + + +SN+G+I+ L K + Sbjct: 487 -----RRT---ELMVGEVLSLEDEDLIEEADVLITLSNKGYIKRLNQAEFTAQKRGGRGV 538 Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLLSGRG 585 K+ D +K + T DR+L + G+ Y LP NLL Sbjct: 539 QGTGVKDDDFVKELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLK-LD 597 Query: 586 HGEAIQLLIDLNHNQ 600 GE IQ +I++ ++ Sbjct: 598 EGETIQTIINVQQDR 612 >gi|318606419|emb|CBY27917.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. palearctica Y11] Length = 885 Score = 412 bits (1059), Expect = e-112, Method: Compositional matrix adjust. Identities = 252/635 (39%), Positives = 371/635 (58%), Gaps = 60/635 (9%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + V++ L+ YL YA+S I RA+PD+RDG KPVHRR+++AM+ +G D+ +KKSA Sbjct: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKPYKKSA 67 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG++DGDSAAA RYTE RM Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRM 127 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 +++A +L +++D VDF Y+ + P V P+K PNLL NG+SGIAVGMAT+IP HN+ Sbjct: 128 SKIAHELLADLEKDTVDFVPNYDGTEQIPAVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ + LA I++ I+IE L+EYI GPDFPT II R I E+YR GRG +RAR Sbjct: 188 SEVIDGCLAYIEDENITIEGLMEYIPGPDFPTAAII-NGRRGIEEAYRTGRGKVYIRARA 246 Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314 VE + G I+V EIPYQV K+RLIEKIAEL+ KR+ + +RDES +D +RIV+ Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K ++ ++++ +++ L+ ++ F +NM LS G+ P+++ L IL ++ HRREV+ R Sbjct: 307 IKRDAVG-EVVLNNLYSLTQLQVTFGINMVGLSQGQ-PKLLNLKDILVAFVRHRREVVTR 364 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK----------------PVMV 418 R+ F ++ R IL+ L IA NID II +IR P M+ Sbjct: 365 RTIFELRKARDRAHILEALAIALANIDPIIELIRRAATPAEAKAGLIASPWELGNVAAML 424 Query: 419 SR---------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457 R + LTE Q AIL+LRL+ L LE ++ E LL Sbjct: 425 ERAGGDAARPEWLEAEFGIRDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLTV 484 Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517 ++ +L + ++ I E+ +KE+++ + RRT E++ + +I + Sbjct: 485 IAELIFILENPERLMEVIREELVAIKELYNDA-----RRT---EITANTSDINIEDLINQ 536 Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569 E + V +S++G+++ + + SA KE D + L A+T D IL S+ Sbjct: 537 EDVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSR 596 Query: 570 GKAYTLPAGNLL-SGRG-HGEAIQLLIDLNHNQDI 602 G+ Y + L + RG G I L+ L N+ I Sbjct: 597 GRLYWMKVYQLPEASRGARGRPIVNLLPLEPNERI 631 >gi|300818170|ref|ZP_07098382.1| DNA gyrase, A subunit [Escherichia coli MS 107-1] gi|300529314|gb|EFK50376.1| DNA gyrase, A subunit [Escherichia coli MS 107-1] Length = 875 Score = 412 bits (1059), Expect = e-112, Method: Compositional matrix adjust. Identities = 255/659 (38%), Positives = 380/659 (57%), Gaps = 65/659 (9%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + V++ L+ YL YA+S I RA+PD+RDG KPVHRR+++AM+ +G D+ A+KKSA Sbjct: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD +VY ++VR+AQPF RY L+ GQGNFG+IDGDSAAA RYTE R+ Sbjct: 68 RVVGDVIGKYHPHGDLAVYYTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 ++A ++ ++++ VDF D Y+ + P V P+K PNLL NG+SGIAVGMAT+IP HN+ Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ LA ID+ +ISIE L+E+I GPDFPT II R I E+YR GRG +RAR Sbjct: 188 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAII-NGRRGIEEAYRTGRGKVYIRARA 246 Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314 VE + G I+V EIPYQV K+RLIEKIAEL+ KR+ + +RDES +D +RIV+ Sbjct: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K ++ ++++ +++ + ++ F +NM L G+ P++M L I+ ++ HRREV+ R Sbjct: 307 VKRDAVG-EVVLNNLYSQTQLQVSFGINMVALHHGQ-PKIMNLKDIIAAFVRHRREVVTR 364 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----------- 420 R+ F ++ R IL+ L +A NID II +IR+ P K +V+ Sbjct: 365 RTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAML 424 Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457 + LTE Q AIL+LRL+ L LE ++ E LL + Sbjct: 425 ERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQ 484 Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517 ++ +L S + I E+ V+E F G +R T + AD + +I + Sbjct: 485 IAELLRILGSADRLMEVIREELELVREQF------GDKRRTEITANSADINL--EDLITQ 536 Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569 E + V +S++G+++ + + SA KE D + L A+T D IL S+ Sbjct: 537 EDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSR 596 Query: 570 GKAYTLPAGNLLSG-RG-HGEAIQLLIDLNHNQDIVTAFV----YDSTCKLLVVSSKGN 622 G+ Y++ L RG G I L+ L ++ I TA + ++ K+ + ++ G Sbjct: 597 GRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERI-TAILPVTEFEEGVKVFMATANGT 654 >gi|268678964|ref|YP_003303395.1| DNA gyrase subunit alpha [Sulfurospirillum deleyianum DSM 6946] gi|268616995|gb|ACZ11360.1| DNA gyrase, A subunit [Sulfurospirillum deleyianum DSM 6946] Length = 846 Score = 412 bits (1059), Expect = e-112, Method: Compositional matrix adjust. Identities = 286/788 (36%), Positives = 438/788 (55%), Gaps = 73/788 (9%) Query: 3 VDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62 +DNI N+N +++K +++ +++ YL Y++S I RA+PD RDG KPVHRRI++AM+ Sbjct: 1 MDNIFNTN----QDIKTINIEESIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMN 56 Query: 63 EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122 ++ + + +KKSARIVG+VIGK HPHGD +VYD+LVR+AQPF R P + GQGNFG+ID Sbjct: 57 DLAISSRSPYKKSARIVGDVIGKYHPHGDTAVYDALVRMAQPFSMRIPTVDGQGNFGSID 116 Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182 GD+AAA RYTEARMT +AE +L+ +D+D VDF Y++ EP V PS+ PNLL NG+SG Sbjct: 117 GDNAAAMRYTEARMTPLAEELLRDLDKDTVDFVPNYDDSMIEPDVLPSRVPNLLLNGSSG 176 Query: 183 IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242 IAVGMAT+IP H + E+ + L LIDNPE ++E+++E+I GPDFPT GII ++ I+E+ Sbjct: 177 IAVGMATNIPPHCLDELLDGLLLLIDNPETTLEEIMEFIKGPDFPTSGIIF-GKKGIIEA 235 Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302 YR GRG R+RA+ +E+ G IVV E+PYQV K RLIE+I L+ K I + +IR Sbjct: 236 YRTGRGRVRIRAKTHIEKKGNKD-IIVVDELPYQVNKVRLIEQIVALVKEKMIEGISEIR 294 Query: 303 DESAED-VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361 DES D +R+V+ K ++ D+++ +++ ++ME F + + + + P++ L +L Sbjct: 295 DESDRDGIRLVIELKREAM-SDIVLNNLYKSTNMEVTFGVILLAIH-NKEPKIFTLIELL 352 Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MV 418 + +L HR+ V+ RR+ F ++ + IL+GL IA NIDEIIA+I+ K ++ Sbjct: 353 QLFLRHRKTVIIRRTIFELEKAKAKAHILEGLKIALDNIDEIIALIKGSADTKSAKDGLI 412 Query: 419 SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE 478 RF+L+E Q AIL++RL+ L LE +I++EL LL E +++ +L S N I E Sbjct: 413 ERFNLSEVQAGAILDMRLQRLTGLERDKIENELAELLLEIQRLSDILRSEALLNNLIKEE 472 Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV 538 + E+K+ F +R T + +I EP+ V I++RG+I+ + Sbjct: 473 LLELKDKFKS------KRITEIVDDYD--DIDVEDLIANEPMVVTITHRGYIKRVPLKQY 524 Query: 539 DLSALHFKEGDSLKIALHAHTTDRI-----------LLLSTDG------KAYTLPAGNLL 581 + K G KIA+ + D I L+ TD K Y +P G Sbjct: 525 EKQ----KRGGKGKIAVTTYDDDFIESFFVSDTHDTLMFVTDRGQLYWLKVYKIPEG--- 577 Query: 582 SGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKG-----------NAFIVE 627 S G+A+ LI L ++ I+ +D T L + G N V Sbjct: 578 SRTAKGKAVVNLIQLQADEKIMAIIPTTDFDETKSLAFFTKNGVIKRTNLSEFKNIRSVG 637 Query: 628 ESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAV---VGENRKLLIFSIDQIPEMSRG 684 I + G K+ ++E L + VT + + VG+ R +I +RG Sbjct: 638 VRAITLDDDDGLVTAKIVTQEAKNLFI-VTKKGMCIRFEVGDAR--------EIGRTARG 688 Query: 685 -KGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKG 743 G+R + D + + + E L + G + + L RGG G + K Sbjct: 689 VTGIRFKEENDCVVGAAVIYNDQEELLTVTEKGIGKRTTAEEY--RLQNRGGKGVIAMKL 746 Query: 744 FPRSGKFL 751 P++ + Sbjct: 747 TPKTADLV 754 >gi|270262776|ref|ZP_06191047.1| DNA gyrase subunit A [Serratia odorifera 4Rx13] gi|270043460|gb|EFA16553.1| DNA gyrase subunit A [Serratia odorifera 4Rx13] Length = 883 Score = 412 bits (1059), Expect = e-112, Method: Compositional matrix adjust. Identities = 273/730 (37%), Positives = 412/730 (56%), Gaps = 73/730 (10%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + V++ L+ YL YA+S I RA+PD+RDG KPVHRR++ AMS +G D+ +KKSA Sbjct: 8 ITPVNIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSVLGNDWNKPYKKSA 67 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG++DGDSAAA RYTE RM Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEVRM 127 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 +++A +L ++++ VDF Y+ + P V P+K PNLL NG+SGIAVGMAT+IP HN+ Sbjct: 128 SKIAHELLADLEKETVDFVPNYDGTEQIPAVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ LA ID+ ISIE L+E+I GPDFPT II R I E+YR GRG +RAR Sbjct: 188 SEVINGCLAYIDDENISIEGLMEHIPGPDFPTAAII-NGRRGIEEAYRTGRGKIYLRARA 246 Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314 VE + G I+V EIPYQV K+RLIEKIAEL+ KR+ + +RDES +D +RIV+ Sbjct: 247 EVETDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVVE 306 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K ++ ++++ +++ L+ ++ F +NM L G+ P+++ L IL+ ++ HRREV+ R Sbjct: 307 IKRDAVG-EVVLNNLYSLTQLQVTFGINMVALHQGQ-PKLLNLKDILQAFVRHRREVVTR 364 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-------------------------- 408 R+ F ++ R IL+ L IA NID II +IR Sbjct: 365 RTIFELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAGLVAQAWDLGNVGAML 424 Query: 409 ---NEDKPKP--------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457 +D +P + ++ LTE Q AIL+LRL+ L LE ++ E LL Sbjct: 425 ERAGDDAARPEWLEPEFGIRDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLTF 484 Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517 ++ +L + + I E+ VKE+++ GRR E++ + +I + Sbjct: 485 IAELIFILENPDRLMEVIREELVAVKELYND----GRR----TEITANTSDINIEDLINQ 536 Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569 E + V +S++G+++ + + SA KE D + L A+T D IL S+ Sbjct: 537 EDVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSR 596 Query: 570 GKAYTLPAGNLL-SGRG-HGEAIQLLIDLNHNQDIVTAFV----YDSTCKLLVVSSKGNA 623 G+ Y + L + RG G I L+ L N+ I TA + Y+ + + ++ G Sbjct: 597 GRLYWMKVYQLPEASRGARGRPIVNLLPLEANERI-TAILPVREYEEGRHVFMATASGT- 654 Query: 624 FIVEESEIIANTR-KGKTFLKVSSEEKMKLV-VKVT--GDHVAVVGENRKLLIFSIDQIP 679 V+++ + +R + + V+ E +L+ V +T + V + N K++ F Q+ Sbjct: 655 --VKKTALTEFSRPRSAGIIAVNLNEGDELIGVDLTDGSNEVMLFSANGKVVRFPETQVR 712 Query: 680 EMSR-GKGVR 688 M R GVR Sbjct: 713 SMGRTATGVR 722 >gi|262278124|ref|ZP_06055909.1| type IIA topoisomerase [Acinetobacter calcoaceticus RUH2202] gi|262258475|gb|EEY77208.1| type IIA topoisomerase [Acinetobacter calcoaceticus RUH2202] Length = 904 Score = 412 bits (1059), Expect = e-112, Method: Compositional matrix adjust. Identities = 236/611 (38%), Positives = 357/611 (58%), Gaps = 63/611 (10%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 ++ +++ L+ YL YA+S I RA+PD+RDG KPVHRR++ AM E+G D+ A+KKSA Sbjct: 6 IRPIAIEDELKHSYLDYAMSVIVSRALPDVRDGLKPVHRRVLFAMHELGNDYNKAYKKSA 65 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD +VY+++VR+AQ F RY L+ GQGNFG+IDGDSAAA RYTE RM Sbjct: 66 RVVGDVIGKYHPHGDSAVYETIVRMAQDFSLRYLLVDGQGNFGSIDGDSAAAMRYTEVRM 125 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 T++A +L +++D VD+ D Y+ + P V P++ PNLL NG +GIAVGMAT++ HN+ Sbjct: 126 TKLAHELLADLEKDTVDWEDNYDGSERIPQVVPTRVPNLLINGAAGIAVGMATNMAPHNM 185 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ A LA DNP ISIE L+EYI GPDFPTGGII + IV++YR G+G +R ++ Sbjct: 186 TEVVNACLAYADNPNISIEGLMEYITGPDFPTGGIIY-GKSGIVDAYRTGKGRLHIRGKY 244 Query: 257 CVEEVGR-GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315 EE + G IV TEIPYQV K+R+IE+IAEL+ K++ + ++RDES +D + Sbjct: 245 HFEEDEKTGRITIVFTEIPYQVNKARVIERIAELVKEKKLEGISELRDESDKDGMRIAID 304 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 R + ++++ ++F+ + +E F +NM L G+ P++M L I+ ++ HR+EV+ RR Sbjct: 305 LKRGENAEVIVNNLFLNTQLENSFSINMVCLDNGQ-PKLMNLKDIIAAFIRHRQEVVTRR 363 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR--------------------------- 408 + F ++ R IL+GL +A NIDEII I+ Sbjct: 364 TMFELRKARERGHILEGLTVALANIDEIIETIKTSANPAEARERLLAGEWAGGGVVSLLE 423 Query: 409 ---------------NEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453 N D+P + S + L+ QV AIL LRL L LE+ ++ +E Sbjct: 424 KAGAISVRPDEIEGENPDRPFGLSESIYRLSPTQVGAILELRLHRLTGLEQDKLHAEYTE 483 Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIR-EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ 512 +L + ++ ++LN +N + IR E+ ++ + D RRT E SR D + ++ Sbjct: 484 ILGQIAELTAILN----DFNLLMAVIREELAQVLQQYGD--GRRTEIIE-SRIDFS--RE 534 Query: 513 AMIEKEPITVVISNRGWIRS--LKSHSVDL------SALHFKEGDSLKIALHAHTTDRIL 564 +I +E + + +S G+ ++ L + SA K D ++ + A +L Sbjct: 535 DLIPEEQVVLTVSQTGYAKTQPLSDYQAQRRGGRGKSATSMKSDDFIQHLIVASNHATVL 594 Query: 565 LLSTDGKAYTL 575 + GK Y L Sbjct: 595 CFTNVGKVYRL 605 >gi|327469994|gb|EGF15458.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus sanguinis SK330] Length = 826 Score = 412 bits (1059), Expect = e-112, Method: Compositional matrix adjust. Identities = 256/713 (35%), Positives = 410/713 (57%), Gaps = 52/713 (7%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 + N+ V+L ++ ++ YA+S I RA+PD+RDG KPVHRRI++ M+E+G+ K Sbjct: 10 DRNLVNVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPEKPHK 69 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSARI G+V+GK HPHGD S+Y+++VR+AQ + RY L+ G GNFG++DGD AAA RYTE Sbjct: 70 KSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYVLVDGHGNFGSMDGDGAAAQRYTE 129 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 ARM+++A +L+ ++++ VD+ D Y+ + EPVV P++FPNLL NG +GIAVGMAT+IP Sbjct: 130 ARMSKIALEMLRDINKNTVDYIDNYDASEREPVVLPARFPNLLVNGATGIAVGMATNIPP 189 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E +A ++DNP+ + ++E + GPDFPTG +++ + I +Y G+G +R Sbjct: 190 HNLGESIDAVKLVMDNPDATTRDIMEVLPGPDFPTGALVM-GKSGIHRAYETGKGSIVLR 248 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312 +R +EE+ G IVVTE PY V K+++ E I L+ KRI + +RDES E VR V Sbjct: 249 SRTEIEEMKNGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVRFV 308 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 + + R +++ ++F L+ M+T F NM + G VP+++ L IL ++ H++EV+ Sbjct: 309 IEVR-RDASAHVILNNLFKLTQMQTNFSFNMLAIQNG-VPKILSLREILLAYIEHQKEVV 366 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVD 429 RR++F + + R IL GLLIA +IDE+I IIRN + + + ++++F L+E Q Sbjct: 367 TRRTAFDKEKAEARAHILAGLLIALDHIDEVIRIIRNSETDAEAQAELMAKFELSERQSQ 426 Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489 AIL++RLR L LE +I+SE D L+A + +L ++ I E+ EVK F+ Sbjct: 427 AILDMRLRRLTGLERDKIQSEYDELIALIADLADILAKPERVIAIIKEELDEVKRKFADD 486 Query: 490 TDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSL--------KSHSVDL 540 RRT E+ + +L+ + +IE+ + + +SN+G+I+ L K + Sbjct: 487 -----RRT---ELMVGEVLSLEDEDLIEEADVLITLSNKGYIKRLNQAEFTAQKRGGRGV 538 Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLLSGRG 585 K+ D +K + T DR+L + G+ Y LP NLL Sbjct: 539 QGTGVKDDDFVKELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLK-LD 597 Query: 586 HGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK-GKTFLKV 644 GE IQ +I++ ++ ++++ +T +V + F AN R+ G L + Sbjct: 598 EGETIQTIINVQQDRSD-DSYLFFTTRHGVVKRTSVTEF--------ANIRQNGLKALNL 648 Query: 645 SSEEKMKLVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSR-GKGVRLQSYKDG 695 E+++ V G ++G + F+ + MSR GVR + +DG Sbjct: 649 KDEDELINVFLTDGAADVIIGTKFGYSVRFNETAVRSMSRIATGVRGVNLRDG 701 >gi|15828618|ref|NP_325978.1| DNA gyrase subunit A [Mycoplasma pulmonis UAB CTIP] gi|14089560|emb|CAC13320.1| DNA GYRASE SUBUNIT A [Mycoplasma pulmonis] Length = 887 Score = 412 bits (1059), Expect = e-112, Method: Compositional matrix adjust. Identities = 249/702 (35%), Positives = 410/702 (58%), Gaps = 38/702 (5%) Query: 12 LVEENVKA---VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68 L+EE + V++ ++ +L YA+S I RAIPD RDG KPVHRRI++ M ++GL Sbjct: 56 LIEEPISGLAPVTVSKEMQNSFLEYAMSVIVSRAIPDARDGLKPVHRRILYGMFDLGLHH 115 Query: 69 GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128 +AFKKSARIVG+V+GK HPHGD SVY+++VR+AQ F RYPL+ G GNFG+IDGD AAA Sbjct: 116 SSAFKKSARIVGDVLGKYHPHGDASVYEAMVRMAQEFSMRYPLVDGHGNFGSIDGDPAAA 175 Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188 RYTEAR+++++ +L G+ ++ V+F Y+ + EP V PS+FPNLL G GIAVGMA Sbjct: 176 MRYTEARLSKLSAEMLNGIRKNTVNFIPNYDASEVEPEVLPSRFPNLLVTGGQGIAVGMA 235 Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248 T+I HN+ E A +A NP+IS+ +L+E+I GPDFPTGGII+ ++ I++++ G+G Sbjct: 236 TTIAPHNLAETISATIAYARNPQISLAELMEHIKGPDFPTGGIILGTK-GIIDAFETGKG 294 Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-E 307 +R++ +E + G I+V+EIPY VQK+ +IEKIA L+ K I + D+RDE+ + Sbjct: 295 SISIRSKTEIEYLSNGKTRIIVSEIPYSVQKTTIIEKIALLVKEKVIEGISDLRDETNRK 354 Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367 +RIV+ K ++ P++++ +F ++++ F +NM L G P+++ L L+ +L H Sbjct: 355 GIRIVIEVK-KNFVPEVVLNKLFKTTNLQLNFNVNMVALVNGE-PKLLSLKDALRVYLDH 412 Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLT 424 ++E++ RR F ++ + R+ IL+GL IA NIDE+I IIR + + + + +FSL+ Sbjct: 413 QKEIVIRRLKFDLEKSEARLHILEGLKIAVSNIDEVIRIIRASKTDSEAQEKLGQKFSLS 472 Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484 E Q AI+ +RL L L +++ E+ LL I +LNS ++ + I E+ E+KE Sbjct: 473 EIQTKAIVEMRLGRLTGLAIEKMEQEIQELLITISNIKEILNSEQKLIDLIVEELEEIKE 532 Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSH 536 + G +R T + S A + +I + I ++ S +G+++ + Sbjct: 533 KY------GDKRLTQID-SYAIANISDEDLIPERNIAIIQSVKGYVKRINLSEYKVQNRG 585 Query: 537 SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL--LI 594 V S E D L + T +L+ ++ K Y + A + + I LI Sbjct: 586 GVGTSTAKTYEDDDLASIITTTTHTDLLIFTSFAKVYRIRAHQIPESSKQSKGIPFINLI 645 Query: 595 DLNHNQDIVT---AFVYDSTCKLLVVSSKGNAFIVEESEIIANTR---KGKTFLKVSSEE 648 + ++++V+ A YD L+ ++ G ++++++I R GK + + + Sbjct: 646 QIEKDEEVVSILPAQNYDDGKFLVTLTQNG---LIKKTKIEHFQRINTNGKIAMVILEND 702 Query: 649 KMKLVVKVTGDHVAVVGENR-KLLIFSIDQIPEMSR-GKGVR 688 K+ + + D +VG + K++ F + ++ + R GVR Sbjct: 703 KLVRAMILNNDEEIIVGSSEGKIVRFDLSEVRDTGRKSAGVR 744 >gi|28189058|dbj|BAC56210.1| DNA gyrase subunit A [Streptococcus suis] Length = 814 Score = 412 bits (1059), Expect = e-112, Method: Compositional matrix adjust. Identities = 232/618 (37%), Positives = 374/618 (60%), Gaps = 40/618 (6%) Query: 12 LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71 + ++N+ V+L ++ ++ YA+S I RA+PD+RDG KPVHRRI++ M+E+G+ Sbjct: 1 MQDKNLVTVNLTNEMKSSFIDYAMSVIVSRALPDVRDGLKPVHRRILYGMNELGITPDKP 60 Query: 72 FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131 KKSARI G+V+GK HPHGD ++Y+++VR+AQ + R+ L+ G GNFG++DGD AAA RY Sbjct: 61 HKKSARITGDVMGKYHPHGDSAIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRY 120 Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191 TEARM+++A +L+ ++++ V+F D Y+ + EP V P++FPNLL NGT+GIAVGMAT+I Sbjct: 121 TEARMSKIALEMLRDINKNTVNFADNYDASEREPEVLPARFPNLLVNGTTGIAVGMATNI 180 Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251 P HN+ E EA ++DNPE++ +++E + GPDFPTG +++ + I +Y G+G Sbjct: 181 PPHNLGETIEAVKLVMDNPEVTTREIMEVLPGPDFPTGALVM-GKSGIHRAYETGKGSIV 239 Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVR 310 +R+R +EE G G IVVTE PY V KS++ E I +L+ KRI + +RDES E VR Sbjct: 240 LRSRTEIEEYGNGRERIVVTEFPYMVNKSKVQEHIVKLVQEKRIEGITAVRDESNREGVR 299 Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370 V+ + R ++++ ++F + ++T F M + G VP+++ + IL+ ++ H++E Sbjct: 300 FVIEVR-RDASANVILNNLFKQTQLQTNFSFTMLAIQNG-VPKILSVRQILESYIEHQKE 357 Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQ 427 V+ RR+ F + + R IL+GLLIA +IDE+I IIRN + + ++ +F L+E Q Sbjct: 358 VVTRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRNSETDAIAQAELMEKFDLSERQ 417 Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487 AIL++RLR L LE +I+SE D L+A + +L ++ I E+ EVK ++ Sbjct: 418 SQAILDMRLRRLTGLERDKIQSEYDELVALIADLADILAKPERVVQIIKDELEEVKRKYA 477 Query: 488 KSTDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSL--------KSHSV 538 RRT E+ + +L+ + +IE+ + + +SN+G+I+ L K Sbjct: 478 DP-----RRT---ELMVGEVLSLEDEDLIEETDVLITLSNQGYIKRLAQDEFQAQKRGGR 529 Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLLSG 583 + K+ D ++ + T DR+L + G+ Y LP NLL Sbjct: 530 GVQGTGVKDDDFVRELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKL 589 Query: 584 RGHGEAIQLLIDLNHNQD 601 EAIQ +I++ +Q+ Sbjct: 590 E-ENEAIQTIINVTKDQE 606 >gi|332366850|gb|EGJ44591.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus sanguinis SK1059] Length = 826 Score = 412 bits (1059), Expect = e-112, Method: Compositional matrix adjust. Identities = 257/713 (36%), Positives = 409/713 (57%), Gaps = 52/713 (7%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 + N+ V+L ++ ++ YA+S I RA+PD+RDG KPVHRRI++ M+E+G+ K Sbjct: 10 DRNLVNVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPEKPHK 69 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSARI G+V+GK HPHGD S+Y+++VR+AQ + RY L+ G GNFG++DGD AAA RYTE Sbjct: 70 KSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYTE 129 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 ARM+++A +L+ ++++ VD+ D Y+ + EPVV P++FPNLL NG +GIAVGMAT+IP Sbjct: 130 ARMSKIALEMLRDINKNTVDYIDNYDASEREPVVLPARFPNLLVNGATGIAVGMATNIPP 189 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E +A ++DNPE + ++E + GPDFPTG +++ + I +Y G+G +R Sbjct: 190 HNLGESIDAVKLVMDNPEATTRDIMEVLPGPDFPTGALVM-GKSGIHRAYETGKGSIVLR 248 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312 +R +EE+ G IVVTE PY V K+++ E I L+ KRI + +RDES E VR V Sbjct: 249 SRTEIEEMKNGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVRFV 308 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 + + R +++ ++F L+ M+T F NM + G VP+++ L IL ++ H++EV+ Sbjct: 309 IEVR-RDASAHVILNNLFKLTQMQTNFSFNMLAIQNG-VPKILSLREILLAYIEHQKEVV 366 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVD 429 RR+ F + + R IL GLLIA +IDE+I IIRN + + + ++++F L+E Q Sbjct: 367 TRRTVFDKEKAEARAHILAGLLIALDHIDEVIRIIRNSETDAEAQAELMAKFELSERQSQ 426 Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489 AIL++RLR L LE +I+SE D L+A + +L ++ I E+ EVK F+ Sbjct: 427 AILDMRLRRLTGLERDKIQSEYDELIALIADLADILAKPERVIAIIKEELDEVKRKFADD 486 Query: 490 TDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSL--------KSHSVDL 540 RRT E+ + +L+ + +IE+ + + +SN+G+I+ L K + Sbjct: 487 -----RRT---ELMVGEVLSLEDEDLIEEADVLITLSNKGYIKRLNQAEFTAQKRGGRGV 538 Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLLSGRG 585 K+ D +K + T DR+L + G+ Y LP NLL Sbjct: 539 QGTGVKDDDFVKELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLK-LD 597 Query: 586 HGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK-GKTFLKV 644 GE IQ +I++ ++ ++++ +T +V + F AN R+ G L + Sbjct: 598 EGETIQTIINVQQDRSD-DSYLFFTTRHGVVKRTSVTEF--------ANIRQNGLKALNL 648 Query: 645 SSEEKMKLVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSR-GKGVRLQSYKDG 695 E+++ V G ++G + F+ + MSR GVR + +DG Sbjct: 649 KDEDELINVFLTDGAADVIIGTKFGYSVRFNETAVRSMSRIATGVRGVNLRDG 701 >gi|163736388|ref|ZP_02143807.1| DNA gyrase, A subunit [Phaeobacter gallaeciensis BS107] gi|161390258|gb|EDQ14608.1| DNA gyrase, A subunit [Phaeobacter gallaeciensis BS107] Length = 908 Score = 412 bits (1059), Expect = e-112, Method: Compositional matrix adjust. Identities = 251/680 (36%), Positives = 384/680 (56%), Gaps = 57/680 (8%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 VS+ + YL YA+S I RAIPDLRDG KPVHRRI++AM E+G ++KSAR V Sbjct: 16 VSIESEMRTSYLDYAMSVIVSRAIPDLRDGLKPVHRRILYAMHEVGNSHDKPYRKSARPV 75 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+V+GK HPHGD ++YD+LVR+AQ F PL+ GQGNFG++DGD+ AA RYTE RM + Sbjct: 76 GDVMGKYHPHGDSAIYDALVRMAQDFSMSLPLLDGQGNFGSMDGDNPAAMRYTEVRMDKP 135 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A IL +++D VDF+D Y+ +D EP V P++FPN+L NG GIAVGMAT+IP HN+ E+ Sbjct: 136 AASILADIEKDTVDFQDNYDGKDREPTVLPARFPNMLVNGAGGIAVGMATNIPPHNLGEV 195 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 +A LALI++P+++ E+L++Y+ GPDFPTGG+++ R ++Y GRG +RA+ VE Sbjct: 196 IDATLALIEDPDLTSEQLIDYVPGPDFPTGGVML-GRSGARKAYLEGRGSVVIRAKTRVE 254 Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKNR 318 E+ + + IVV EIPYQV K+ +IEKIAE + K+I + ++DES + VR+V+ K R Sbjct: 255 EIRKDRYAIVVEEIPYQVNKAAMIEKIAEQVREKKIEGVSHVQDESDRNGVRVVVELK-R 313 Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378 ++++ ++ S M+T F NM L+ GR P+ + L L +L R +V+ RR+++ Sbjct: 314 DATAEVVLNQLYRFSPMQTHFGCNMLALNGGR-PEQLTLRRFLTSFLDFREDVIARRTAY 372 Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---------------------------D 411 ++ R IL GL +A N+DE++A IR D Sbjct: 373 DLRKARERSHILCGLAVAVSNVDEVVATIRASADAAEARHKLMTRRWPAVDIAPYIRLID 432 Query: 412 KPKPVMV--SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGK 469 P M ++L+E Q AIL LRL+ L ++ ++ EL+ L + ++ +L+S + Sbjct: 433 DPTHTMNDDGTYNLSEVQARAILELRLQRLTQIGVKEVTDELEELAGKIKEYLEILSSRE 492 Query: 470 QQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW 529 + I+ E+REV++ F+ RRT + S + +IE+E + V I++ G+ Sbjct: 493 RILGIISDELREVRDNFAVP-----RRTEIVDWS---GDMEDEDLIEREDMVVTITSGGY 544 Query: 530 I--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL 581 I R+ K LS + KE D + A+T ++L +TDG Y L L Sbjct: 545 IKRTPLVDFRAQKRGGKGLSGMQTKEEDVVTNLFVANTHTQLLFFTTDGMVYKLKTWRLP 604 Query: 582 SG--RGHGEAIQLLIDLNHNQDIVTAFVYD------STCKLLVVSSKGNAFIVEESEIIA 633 G G+AI ++ + I D +++ +S G+ S+ Sbjct: 605 QGGRTSKGKAIVNILPIPPGVSIAAIMPVDVPDDEWENLQVVFATSGGDVRRNRLSDFTN 664 Query: 634 NTRKGKTFLKVSSEEKMKLV 653 R GK +K+ + +KLV Sbjct: 665 VRRNGKIAMKLPEDGSVKLV 684 >gi|194335275|ref|YP_002017069.1| DNA gyrase, A subunit [Pelodictyon phaeoclathratiforme BU-1] gi|194307752|gb|ACF42452.1| DNA gyrase, A subunit [Pelodictyon phaeoclathratiforme BU-1] Length = 827 Score = 412 bits (1058), Expect = e-112, Method: Compositional matrix adjust. Identities = 273/766 (35%), Positives = 417/766 (54%), Gaps = 49/766 (6%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 E + +S+ + YL Y++S I RA+PD+RDG KPVHRR++ M E+GL G KK Sbjct: 4 ERIVPISIEEEMRGSYLDYSMSVIVSRALPDVRDGLKPVHRRVLFGMHELGLQAGKPHKK 63 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 SAR+VGEV+GK HPHGD +VYDSLVRL Q F RYPLI GQGNFG++DGDS AA RYTE Sbjct: 64 SARVVGEVLGKFHPHGDTAVYDSLVRLVQEFSMRYPLIDGQGNFGSVDGDSPAAMRYTEV 123 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 RM +A +L+ +D+ VDF +++ EP V PS PNLLANG+SGIAVGMAT+IP Sbjct: 124 RMKSIAGEMLKDLDKATVDFSLNFDDSLEEPTVLPSAIPNLLANGSSGIAVGMATNIPPQ 183 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 N++E+ + +ALI NPE+ + L++Y+I PDFPTGGII E + +Y GRG +RA Sbjct: 184 NLREVVDGMIALIANPELEVADLMKYVIAPDFPTGGIIY-GYEGVRSAYMTGRGKVVIRA 242 Query: 255 RWCVEEVGRGSW-CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313 R VE + S IVVTE+PYQV K RLIEKI EL+ K+I + DIRDES D ++ Sbjct: 243 RAIVEITPKNSRESIVVTELPYQVNKVRLIEKIVELVHDKKIEGIADIRDESDRDGMRLV 302 Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373 R +++ +++ + M+ F + M L G VP+++ L ++ ++ HR E++ Sbjct: 303 IELKRDAVAMVVLNNLYKHTPMQDTFGVIMLALVDG-VPRILNLKEMMVYYIKHRNEIVL 361 Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDA 430 RR+ F + ++R IL+GL I N+DE+I+ IR + + ++ RF L+E Q A Sbjct: 362 RRTQFDLATAEKRAHILEGLKICLDNLDEVISTIRESPDASTAQERLIERFGLSELQSKA 421 Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490 IL +RL+ L +E +I E +LA E++ +L S ++Q I E+ +V+E++ Sbjct: 422 ILEMRLQRLTGMERKKIDLEYTEVLAFIEELRFILGSPEKQMQIIREELLKVREVYGDE- 480 Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DLSA 542 RRT E+ + + MI +E + + I++ G+I+ ++ Sbjct: 481 ----RRT---EIVPQEGDFSIEDMIAQEDVVITITHEGFIKRFPVSGYRRQARGGKGVTG 533 Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLP-AGNLLSGRGHGEAIQLLIDL 596 K D ++ A T + IL + G K Y +P AG GR A+ +++L Sbjct: 534 AQAKHDDFVEHMFIASTHNYILFFTNRGRCHWLKVYEIPEAGRAARGR----ALANIMEL 589 Query: 597 NHNQDIVTAFV----YDSTCKLLVVSSKGNAFIVEES--EIIANTRKGKTFLKVSSEEKM 650 + I A++ +D +++ ++ G IV+++ E ++ RK E Sbjct: 590 QQGEKI-RAYINIRNFDEPGFIVMATTNG---IVKKTPLEDFSHPRKNGIAAITIDEHDE 645 Query: 651 KLVVKVT-GDHVAVVGENRKLLI-FSIDQIPEMSR-GKGVRLQSYKDG--GISDVICFKI 705 L ++T GDH ++ +N ++ F +I M R GV+ + +G IS V + Sbjct: 646 LLDARLTDGDHQIILAKNSGFVVRFPEAEIRSMGRTAMGVKGITLDEGEKCISMVTTKRF 705 Query: 706 CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751 L + G D L +RG G + K + G + Sbjct: 706 DTALLAVTDNGFGKRSRVEDY--RLTRRGARGVITLKAHEKVGALI 749 >gi|332361161|gb|EGJ38965.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus sanguinis SK1056] Length = 826 Score = 412 bits (1058), Expect = e-112, Method: Compositional matrix adjust. Identities = 256/713 (35%), Positives = 410/713 (57%), Gaps = 52/713 (7%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 + N+ V+L ++ ++ YA+S I RA+PD+RDG KPVHRRI++ M+E+G+ K Sbjct: 10 DRNLVNVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPEKPHK 69 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSARI G+V+GK HPHGD S+Y+++VR+AQ + RY L+ G GNFG++DGD AAA RYTE Sbjct: 70 KSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYTE 129 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 ARM+++A +L+ ++++ VD+ D Y+ + EPVV P++FPNLL NG +GIAVGMAT+IP Sbjct: 130 ARMSKIALEMLRDINKNTVDYIDNYDASEREPVVLPARFPNLLVNGATGIAVGMATNIPP 189 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E +A ++DNP+ + ++E + GPDFPTG +++ + I +Y G+G +R Sbjct: 190 HNLGESIDAVKLVMDNPDATTRDIMEVLPGPDFPTGALVM-GKSGIHRAYETGKGSIVLR 248 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312 +R +EE+ G IVVTE PY V K+++ E I L+ KRI + +RDES E VR V Sbjct: 249 SRTEIEEMKNGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVRFV 308 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 + + R +++ ++F L+ M+T F NM + G VP+++ L IL ++ H++EV+ Sbjct: 309 IEVR-RDASAHVILNNLFKLTQMQTNFSFNMLAIQNG-VPKILSLREILLAYIEHQKEVV 366 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVD 429 RR++F + + R IL GLLIA +IDE+I IIRN + + + ++++F L+E Q Sbjct: 367 TRRTAFDKEKAEARAHILAGLLIALDHIDEVIRIIRNSETDAEAQAELMAKFELSERQSQ 426 Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489 AIL++RLR L LE +I+SE D L+A + +L ++ I E+ EVK F+ Sbjct: 427 AILDMRLRRLTGLERDKIQSEYDELIALIADLADILAKPERVIAIIKEELDEVKRKFADD 486 Query: 490 TDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSL--------KSHSVDL 540 RRT E+ + +L+ + +IE+ + + +SN+G+I+ L K + Sbjct: 487 -----RRT---ELMVGEVLSLEDEDLIEEADVLITLSNKGYIKRLNQAEFTAQKRGGRGV 538 Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLLSGRG 585 K+ D +K + T DR+L + G+ Y LP NLL Sbjct: 539 QGTGVKDDDFVKELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLK-LD 597 Query: 586 HGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK-GKTFLKV 644 GE IQ +I++ ++ ++++ +T +V + F AN R+ G L + Sbjct: 598 EGETIQTIINVQQDRSD-DSYLFFTTRHGVVKRTSVTEF--------ANIRQNGLKALNL 648 Query: 645 SSEEKMKLVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSR-GKGVRLQSYKDG 695 E+++ V G ++G + F+ + MSR GVR + +DG Sbjct: 649 KDEDELINVFLTDGAADVIIGTKFGYSVRFNETAVRSMSRIATGVRGVNLRDG 701 >gi|150024841|ref|YP_001295667.1| DNA gyrase subunit A [Flavobacterium psychrophilum JIP02/86] gi|149771382|emb|CAL42851.1| DNA gyrase subunit A [Flavobacterium psychrophilum JIP02/86] Length = 871 Score = 412 bits (1058), Expect = e-112, Method: Compositional matrix adjust. Identities = 230/632 (36%), Positives = 381/632 (60%), Gaps = 40/632 (6%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 E + +++ ++ Y+ Y++S I RA+PD+RDG KPVHRR+++ M ++G+ +A KK Sbjct: 5 EKLIPINIEDEMKTAYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMYDLGITSKSAHKK 64 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 SARIVGEV+GK HPHGD SVYD++VR+AQ + RY L+ GQGNFG++DGDS AA RYTEA Sbjct: 65 SARIVGEVLGKYHPHGDISVYDAMVRMAQEWSLRYLLVDGQGNFGSVDGDSPAAMRYTEA 124 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 RM +++E I+ ++++ VDF+ +++ EP V P+K P LL NG +GIAVGMAT++P H Sbjct: 125 RMRKISEEIMADIEKETVDFQLNFDDTLYEPKVMPTKVPTLLINGATGIAVGMATNMPPH 184 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 N+ E+ LA ++N +I I++L+++I PDFPTGGII E + E+++ GRG +RA Sbjct: 185 NLTEVINGTLAYLENNDIEIDELMQHIKAPDFPTGGIIY-GYEGVREAFKTGRGRIVMRA 243 Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314 + EEV G CI+V+EIPYQV K+ +I++ A+L+ K+I + +IRDES + +++ Sbjct: 244 KVGFEEVD-GRECIIVSEIPYQVNKADMIKRTADLVNEKKIEGISNIRDESDRNGMRIVY 302 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 R P++++ +++ + +++ F +N L GR PQ++ L ++ ++ HR +V+ R Sbjct: 303 ILKRDATPNVVLNTLYKYTQLQSSFSVNNIALVKGR-PQMLNLKDLIHYFVEHRHDVVVR 361 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAI 431 R+ F ++ + R IL+GL+IA NIDE+IA+IR N D+ K ++ RF L++ Q AI Sbjct: 362 RTKFDLRKAEERAHILEGLIIASDNIDEVIALIRSSKNTDEAKEKLIERFKLSDIQSRAI 421 Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491 + +RLR L LE+ ++++E + L+ E + +LL + I E+ +++ + Sbjct: 422 VEMRLRQLTGLEQDKLRAEYEELMKLIEHLKALLADVNLRTALIKEELEDMRAKY----- 476 Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSAL 543 G R + E S D + + +I E + + IS+ G+I ++ V + Sbjct: 477 -GDERRSQIEYSGGDVSI--EDLIADENVVITISHAGYIKRTNLNEYKTQNRGGVGQKSA 533 Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKA-----YTLPAGNLLSGRGHGEAIQLLIDLNH 598 ++ D L+ A ++ + GK Y +P G S G A+Q LI++ Sbjct: 534 GTRDADFLEHMYVATNHQYMMFFTQKGKCYWMRVYEIPEG---SKTAKGRALQNLINI-E 589 Query: 599 NQDIVTAFV---------YDSTCKLLVVSSKG 621 + D V AF+ Y ++ L++V+ KG Sbjct: 590 SDDKVKAFICTQDLKDKDYTTSHNLIMVTKKG 621 >gi|153951683|ref|YP_001397894.1| DNA gyrase subunit A [Campylobacter jejuni subsp. doylei 269.97] gi|152939129|gb|ABS43870.1| DNA gyrase, A subunit [Campylobacter jejuni subsp. doylei 269.97] Length = 862 Score = 412 bits (1058), Expect = e-112, Method: Compositional matrix adjust. Identities = 238/607 (39%), Positives = 378/607 (62%), Gaps = 32/607 (5%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 + +++ V + +++ YL Y++S I RA+PD RDG KPVHRRI++AM F Sbjct: 8 DSDIELVDIENSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFV 67 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSARIVG VIG+ HPHGD +VYD+LVR+AQ F RYP I+GQGNFG+IDGDSAAA RYTE Sbjct: 68 KSARIVGAVIGRYHPHGDTAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTE 127 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 A+M++++ +L+ +D+D VDF Y+ +SEP V PS+ PNLL NG+SGIAVGMAT+IP Sbjct: 128 AKMSKLSHELLKDIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPP 187 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 H++ E+ + L L+DN ++S+E+++++I GPDFPTGGII ++ I+E+YR GRG +VR Sbjct: 188 HSLNELIDGLLYLLDNKDVSLEEIMQFIKGPDFPTGGIIY-GKKGIIEAYRTGRGRVKVR 246 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIV 312 A+ +E+ IV+ E+PYQ K+RLIE+IAEL+ K+I + ++RDES E +R+V Sbjct: 247 AKTHIEK-KTNKDVIVIDELPYQTNKARLIEQIAELVKEKQIEGISEVRDESNKEGIRVV 305 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 + K ++ ++++ ++F + ME+ F + M + + P++ L +L +L HR+ V+ Sbjct: 306 IELKREAM-SEIVLNNLFKSTTMESTFGVIMLAIH-NKEPKIFSLLELLNLFLTHRKTVI 363 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLTENQVD 429 RR+ F +Q R IL+GL IA NIDE+IA+I+N + + +V++F L+E Q + Sbjct: 364 IRRTIFELQKARVRAHILEGLKIALDNIDEVIALIKNSSDNNTARDSLVAKFGLSELQAN 423 Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489 AIL+++L L LE +I++EL L+ E +++ +L S N I E++E++ F Sbjct: 424 AILDMKLGRLTGLEREKIENELAELMKEIARLEEILKSETLLENLIRDELKEIRSKF--- 480 Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS-------- 541 D+ R ++ + +I E + V I++RG+I+ + S + Sbjct: 481 -DVPR----ITQIEDDYDDIDIEDLIPNENMVVTITHRGYIKRVPSKQYEKQKRGGKGKL 535 Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDL 596 A+ + D ++ A+T D ++ ++ G K Y +P G S G+A+ LI+L Sbjct: 536 AVTTYDDDFIESFFTANTHDTLMFVTDRGQLYWLKVYKIPEG---SRTAKGKAVVNLINL 592 Query: 597 NHNQDIV 603 + I+ Sbjct: 593 QAEEKIM 599 >gi|28189077|dbj|BAC56225.1| DNA gyrase subunit A [Streptococcus suis] Length = 814 Score = 412 bits (1058), Expect = e-112, Method: Compositional matrix adjust. Identities = 236/639 (36%), Positives = 383/639 (59%), Gaps = 41/639 (6%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 ++N+ V+L ++ ++ YA+S I RA+PD+RDG KPVHRRI++ M+E+G+ K Sbjct: 3 DKNLVTVNLTNEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGITPDKPHK 62 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSARI G+V+GK HPHGD ++Y+++VR+AQ + R+ L+ G GNFG++DGD AAA RYTE Sbjct: 63 KSARITGDVMGKYHPHGDSAIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTE 122 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 ARM+++A +L+ ++++ VDF D Y+ + EP V P++FPNLL NGT+GIAVGMAT+IP Sbjct: 123 ARMSKIALEMLRDINKNTVDFADNYDSSEREPEVLPARFPNLLVNGTTGIAVGMATNIPP 182 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E +A ++DNP+++ +++E + GPDFPTG +++ + I +Y G+G +R Sbjct: 183 HNLGETIDAVKLVMDNPDVTTREIMEVLPGPDFPTGALVM-GKSGIHRAYETGKGSIVLR 241 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312 +R +EE G G IVVTE PY V KS++ E I +L+ KRI + +RDES E VR V Sbjct: 242 SRTEIEEYGNGRERIVVTEFPYMVNKSKVQEHIVKLVQEKRIEGITAVRDESNREGVRFV 301 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 + + R ++++ ++F + M+T F NM + G VP+++ + IL+ ++ H++EV+ Sbjct: 302 IEVR-RDASANVILNNLFKQTQMQTNFSFNMLAIQNG-VPKILSVRQILESYIEHQKEVV 359 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVD 429 RR+ F + + R IL+GLLIA +IDE+I IIRN + + ++ RF L+E Q Sbjct: 360 TRRTQFDKEKAEARAHILEGLLIALDHIDEVIRIIRNSETDALAQAELMERFDLSERQSQ 419 Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489 AIL++RLR L LE +I+SE D L+A + +L ++ I E+ EVK ++ Sbjct: 420 AILDMRLRRLTGLERDKIQSEYDELVALIADLTDILAKPERVVLIIKEELEEVKRKYADP 479 Query: 490 TDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSL--------KSHSVDL 540 RRT E+ + +L+ + +IE+ + + +SN+G+I+ L K + Sbjct: 480 -----RRT---ELMVGEVLSLEDEDLIEEADVLITLSNQGYIKRLAQDEFQAQKRGGRGV 531 Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLLSGRG 585 K+ D ++ + T D +L + G+ Y LP NLL Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLE- 590 Query: 586 HGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAF 624 E+IQ +I++ +Q +++ +T + +V + N F Sbjct: 591 ENESIQTIINVTKDQ-TAEHYLFFATRQGIVKRANVNEF 628 >gi|163741077|ref|ZP_02148469.1| DNA gyrase subunit A [Phaeobacter gallaeciensis 2.10] gi|161385430|gb|EDQ09807.1| DNA gyrase subunit A [Phaeobacter gallaeciensis 2.10] Length = 908 Score = 412 bits (1058), Expect = e-112, Method: Compositional matrix adjust. Identities = 251/681 (36%), Positives = 384/681 (56%), Gaps = 57/681 (8%) Query: 19 AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78 VS+ + YL YA+S I RAIPDLRDG KPVHRRI++AM E+G ++KSAR Sbjct: 15 TVSIESEMRTSYLDYAMSVIVSRAIPDLRDGLKPVHRRILYAMHEVGNSHDKPYRKSARP 74 Query: 79 VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138 VG+V+GK HPHGD ++YD+LVR+AQ F PL+ GQGNFG++DGD+ AA RYTE RM + Sbjct: 75 VGDVMGKYHPHGDSAIYDALVRMAQDFSMSLPLLDGQGNFGSMDGDNPAAMRYTEVRMDK 134 Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198 A IL +++D VDF+D Y+ +D EP V P++FPN+L NG GIAVGMAT+IP HN+ E Sbjct: 135 PAASILADIEKDTVDFQDNYDGKDREPTVLPARFPNMLVNGAGGIAVGMATNIPPHNLGE 194 Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258 + +A LALI++P+++ E+L++Y+ GPDFPTGG+++ R ++Y GRG +RA+ V Sbjct: 195 VIDATLALIEDPDLTSEQLIDYVPGPDFPTGGVML-GRSGARKAYLEGRGSVVIRAKTRV 253 Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKN 317 EE+ + + IVV EIPYQV K+ +IEKIAE + K+I + ++DES + VR+V+ K Sbjct: 254 EEIRKDRYAIVVEEIPYQVNKAAMIEKIAEQVREKKIEGVSHVQDESDRNGVRVVVELK- 312 Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377 R ++++ ++ S M+T F NM L+ GR P+ + L L +L R +V+ RR++ Sbjct: 313 RDATAEVVLNQLYRFSPMQTHFGCNMLALNGGR-PEQLTLRRFLTSFLDFREDVIARRTA 371 Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE--------------------------- 410 + ++ R IL GL +A N+DE++A IR Sbjct: 372 YDLRKARERSHILCGLAVAVSNVDEVVATIRASADAAEARHKLMTRRWPAVDIAPYIRLI 431 Query: 411 DKPKPVMV--SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSG 468 D P M ++L+E Q AIL LRL+ L ++ ++ EL+ L + ++ +L+S Sbjct: 432 DDPTHTMNDDGTYNLSEVQARAILELRLQRLTQIGVKEVTDELEELAGKIKEYLEILSSR 491 Query: 469 KQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRG 528 ++ I+ E+REV++ F+ RRT + S + +IE+E + V I++ G Sbjct: 492 ERILGIISDELREVRDNFAVP-----RRTEIVDWS---GDMEDEDLIEREDMVVTITSGG 543 Query: 529 WI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL 580 +I R+ K LS + KE D + A+T ++L +TDG Y L L Sbjct: 544 YIKRTPLVDFRAQKRGGKGLSGMQTKEEDVVTNLFVANTHTQLLFFTTDGMVYKLKTWRL 603 Query: 581 LSG--RGHGEAIQLLIDLNHNQDIVTAFVYD------STCKLLVVSSKGNAFIVEESEII 632 G G+AI ++ + I D +++ +S G+ S+ Sbjct: 604 PQGGRTSKGKAIVNILPIPPGVSIAAIMPVDVPDDEWENLQVVFATSGGDVRRNRLSDFT 663 Query: 633 ANTRKGKTFLKVSSEEKMKLV 653 R GK +K+ + +KLV Sbjct: 664 NVRRNGKIAMKLPEDGSVKLV 684 >gi|325276957|ref|ZP_08142639.1| DNA gyrase subunit A [Pseudomonas sp. TJI-51] gi|324097912|gb|EGB96076.1| DNA gyrase subunit A [Pseudomonas sp. TJI-51] Length = 921 Score = 412 bits (1058), Expect = e-112, Method: Compositional matrix adjust. Identities = 236/601 (39%), Positives = 362/601 (60%), Gaps = 57/601 (9%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 V++ L + YL YA+S I RA+PD RDG KPVHRR+++AMSE+G D+ +KKSAR+V Sbjct: 11 VNIEDELRQSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMSELGNDWNKPYKKSARVV 70 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG++DGD+AAA RYTE RMT++ Sbjct: 71 GDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRYTEVRMTKL 130 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A +L + ++ VD+ Y+ + P V P++ PNLL NG+SGIAVGMAT+IP HN+ E+ Sbjct: 131 AHELLSDLHKETVDWVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHNLGEV 190 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 + LALIDNPE+++++L+++I GPDFPT GII R+ I+E+YR GRG +RAR VE Sbjct: 191 IDGCLALIDNPEVTVDELMQFIPGPDFPTAGII-NGRQGIIEAYRTGRGRIYMRARSEVE 249 Query: 260 EVGR--GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317 ++ + G IV+TE+PYQ+ K+RLIEKIAEL+ K+I + ++RDES +D ++ Sbjct: 250 DIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKIEGITELRDESDKDGMRIVIELR 309 Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377 R P++++ +++ + +++ F +N+ L GR P+++ L +L+ ++ HRREV+ RR+ Sbjct: 310 RGEVPEVVLNNLYQQTQLQSVFGINVVALVDGR-PRLLNLKDLLEAFVRHRREVVTRRTV 368 Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK----------------PVMVSR- 420 F ++ R IL+G +A NID +IA+I+ P VMV R Sbjct: 369 FELRKARERGHILEGQAVALSNIDPVIALIKASPTPSEAKEALISTPWESSAVQVMVERA 428 Query: 421 --------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEK 460 + L+ Q AIL+LRL L LE ++ +E +L + + Sbjct: 429 GAEACRPEDLPEQYGLHDGKYFLSPEQAQAILDLRLHRLTGLEHEKLLAEYQEILEQIGE 488 Query: 461 IDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI 520 + +LNS ++ I E+ ++ + + RRT E+ A MI +E Sbjct: 489 LIRILNSAERLMEVIREELEAIRAEYGDA-----RRT---EILNASHDLNYGDMIPEEER 540 Query: 521 TVVISNRGWIRS--LKSHSVDL------SALHFKEGDSLKIALHAHTTDRILLLSTDGKA 572 V IS+ G+ ++ L ++ SA K+ D ++ L A++ +LL S+ GK Sbjct: 541 VVTISHGGYAKTQPLSAYQAQRRGGKGKSATGVKDEDYIEHLLVANSHATLLLFSSKGKV 600 Query: 573 Y 573 Y Sbjct: 601 Y 601 >gi|301633386|gb|ADK86940.1| DNA gyrase, A subunit [Mycoplasma pneumoniae FH] Length = 839 Score = 412 bits (1058), Expect = e-112, Method: Compositional matrix adjust. Identities = 243/628 (38%), Positives = 364/628 (57%), Gaps = 36/628 (5%) Query: 12 LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71 L + +K +SL LE ++ YA+S I RA+PD RDG KPVHRR+++ G+ Sbjct: 15 LAQSAIKNISLSSELERSFMEYAMSVIVARALPDARDGLKPVHRRVLYGAYTGGMHHDRP 74 Query: 72 FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131 FKKSARIVG+V+ K HPHGD ++YD++ R+AQ F RY LI G GNFG+IDGD AA RY Sbjct: 75 FKKSARIVGDVMSKFHPHGDMAIYDTMSRMAQDFSLRYLLIDGHGNFGSIDGDRPAAQRY 134 Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191 TEAR++++A +L+ +D+D VDF Y+ E+ EP V P+ FPNLLANG+SGIAVGM+TSI Sbjct: 135 TEARLSKLAGELLRDIDKDTVDFVANYDGEEQEPTVLPAAFPNLLANGSSGIAVGMSTSI 194 Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY-RLGRGGF 250 PSHN+ E+ + + LIDNP+ +I LL I GPDFPTG I+ ++ +ESY G+G Sbjct: 195 PSHNLSELIQGLILLIDNPDCTINDLLGVIKGPDFPTGANIIYTKG--IESYFETGKGNV 252 Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDV 309 +R++ +E++ + +VVTEIPY V K+ LIEKI EL+ A+ I + DIRDES+ E + Sbjct: 253 VIRSKVSIEQLPTRA-ALVVTEIPYMVNKTSLIEKIVELVKAEEITGIADIRDESSREGI 311 Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369 R+V+ K R P++L+ +F + ++ RFP+NM L G P+++ + L +L H+ Sbjct: 312 RLVIEVK-RDTVPEVLLNQLFKSTRLQVRFPVNMLALVKG-APKLLNMKQALTVYLEHQL 369 Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTEN 426 +VL R++ F ++ R IL GLLIA LNIDE+IAII+ + M + RF L E Sbjct: 370 DVLIRKTQFNLKKYQERFHILSGLLIAALNIDEVIAIIKKSANNQVAMEALHERFGLDEI 429 Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486 Q A+L++RLRSL LE ++++E L A E +L + Q I ++ ++ E F Sbjct: 430 QARAVLDMRLRSLSVLEVNKLQTEQQELKALIEFCQQVLADKQLQLKLIKEQLTKINEQF 489 Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS----- 541 RR +S + + +I +E + + +S G+++ + S +L Sbjct: 490 GDP----RRSEILYGIS---EDIDDEDLITQENVVITMSTNGYLKRIGVDSYNLQHRGGV 542 Query: 542 ---ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL--LIDL 596 L DS+ L T +L + GK Y + A + G + I LI + Sbjct: 543 GVKGLTTYTDDSISQLLVCSTHSDLLFFTDKGKVYRIRAHQIPPGFRTNKGIPAVNLIKI 602 Query: 597 NHNQDIVTAFVYDSTCKLLVVSSKGNAF 624 + ++ I C L+ V+ N + Sbjct: 603 DKDEKI---------CALISVNDYQNGY 621 >gi|188997085|ref|YP_001931336.1| DNA topoisomerase (ATP-hydrolyzing) [Sulfurihydrogenibium sp. YO3AOP1] gi|188932152|gb|ACD66782.1| DNA topoisomerase (ATP-hydrolyzing) [Sulfurihydrogenibium sp. YO3AOP1] Length = 793 Score = 412 bits (1058), Expect = e-112, Method: Compositional matrix adjust. Identities = 248/684 (36%), Positives = 396/684 (57%), Gaps = 48/684 (7%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 E++K V + ++ Y+ YA+S I RAIPD+RDG KPV RRI+++M E+GL +KK Sbjct: 2 EDIKKVPIEEEVKSAYIDYAMSVIAGRAIPDVRDGLKPVQRRILYSMYELGLLPNKPYKK 61 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 SAR+VGE +GK HPHGD SVYD+LVR+AQ F RYPLI GQGNFG+IDGD AA RYTEA Sbjct: 62 SARVVGETLGKFHPHGDASVYDALVRMAQDFTMRYPLIEGQGNFGSIDGDPPAAMRYTEA 121 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 R+T++A +L+ +D++ VD ++ EP V PSKFPNL+ NGT+GIAVG+ATSIP H Sbjct: 122 RLTKLAVEMLEDIDKNTVDMMPNFDASLEEPTVLPSKFPNLICNGTTGIAVGLATSIPPH 181 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 N E+ EA L + P+ +IE+L +I GPDFPTGG+I ++E +++ Y+ RG ++ Sbjct: 182 NFTEVAEALKYLAEFPDATIEELFNFIKGPDFPTGGVITNTKEELIDIYKSSRGSITIKG 241 Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVL 313 + +E++ IV+ EIPYQV K LI+KIAEL+ + + D+RDES +RIV+ Sbjct: 242 KARIEKLPGNRQRIVIYEIPYQVNKVELIKKIAELVRTGKEKGISDLRDESDRTGIRIVI 301 Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373 K R D + +++ ++ + +E FP+N+ VL + + P+V+ L +L+E++ HR E++ Sbjct: 302 ELK-RDADAEKVLKKLYKSTPLEKNFPVNLTVL-VDKQPRVLNLKELLQEFIKHRIEIIT 359 Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDA 430 RR+ F ++ + R+ I++GL+ A N D++I I+R+ + + ++ S+F+L+E Q +A Sbjct: 360 RRTLFELEKAENRLHIVEGLITALENADKVIEIVRSSKDTAQARQLLTSQFNLSETQANA 419 Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490 IL++RL LE ++K E L + E+ +L+S + +I I E E+ K Sbjct: 420 ILDMRLSRFTSLETQKLKDESIELKQKIERYKQILSSDNE---KIKVFIEETDELVRKYG 476 Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHS-----------VD 539 D +R+TT ++ + KE I N G I + K ++ Sbjct: 477 D--QRKTTIA---------TEKELTFKEHFMFAILNTGRIVNYKVEDETSKADILQRIIN 525 Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHN 599 ++ EG+ + + I + DGKAY +L G LN Sbjct: 526 SLSISLTEGEKIVSIQEVEGSKPIAFFTKDGKAYWSLVIDLPKGEDK---------LNIE 576 Query: 600 QDIV-TAFVYD-STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657 +IV TA+ + ++ +++ KG + + +I ++ G T + ++ E +LVV V Sbjct: 577 GEIVGTAYQGEGEENRVFLITKKGIIKRMSDEDIFYKSQ-GHTVMPLN--EGDELVVAVA 633 Query: 658 GDHVAVVG---ENRKLLIFSIDQI 678 H + +G +N LL+F +++ Sbjct: 634 DRHPSYIGIYTKNADLLLFERNEV 657 >gi|311278801|ref|YP_003941032.1| DNA gyrase, A subunit [Enterobacter cloacae SCF1] gi|308747996|gb|ADO47748.1| DNA gyrase, A subunit [Enterobacter cloacae SCF1] Length = 878 Score = 412 bits (1058), Expect = e-112, Method: Compositional matrix adjust. Identities = 244/604 (40%), Positives = 355/604 (58%), Gaps = 58/604 (9%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + V++ L+ YL YA+S I RA+PD+RDG KPVHRR+++AM+ +G D+ A+KKSA Sbjct: 8 ITPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG+IDGDSAAA RYTE R+ Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 ++A ++ ++++ VDF D Y+ + P V P+K PNLL NG+SGIAVGMAT+IP HN+ Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ LA ID+ ISIE L+ +I GPDFPT II R I E+YR GRG +RAR Sbjct: 188 TEVINGCLAYIDDENISIEGLMAHIPGPDFPTAAII-NGRRGIEEAYRTGRGKVYIRARA 246 Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314 VE + G I+V EIPYQV K+RLIEKIAEL+ KR+ + +RDES +D +RIV+ Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKDGMRIVIE 306 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K ++ ++++ +++ + ++ F +NM L G+ P++M L IL+ ++ HRREV+ R Sbjct: 307 VKRDAVG-EVVLNNLYSQTQLQVSFGINMVALHHGQ-PKIMNLKEILEAFVRHRREVVTR 364 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----------- 420 R+ F ++ R IL+ L IA NID II +IR P K +++R Sbjct: 365 RTIFELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAALIARSWDLGNVSAML 424 Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457 + LTE Q AIL+LRL+ L LE ++ E LL + Sbjct: 425 ERAGDDAARPEWLEPQFGIHDGKYFLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQ 484 Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517 ++ +L S + I E+ ++E F G R T + AD + +I + Sbjct: 485 IAELLHILGSADRLMEVIREELELIREQF------GDERRTEITANSADINI--EDLINQ 536 Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569 E + V +S++G+++ + + SA KE D + L A+T D IL S+ Sbjct: 537 EDVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSR 596 Query: 570 GKAY 573 G+ Y Sbjct: 597 GRLY 600 >gi|163788232|ref|ZP_02182678.1| DNA topoisomerase, ATP-hydrolyzing (DNA gyrase) (DNA topoisomerase II), subunit A [Flavobacteriales bacterium ALC-1] gi|159876552|gb|EDP70610.1| DNA topoisomerase, ATP-hydrolyzing (DNA gyrase) (DNA topoisomerase II), subunit A [Flavobacteriales bacterium ALC-1] Length = 622 Score = 412 bits (1058), Expect = e-112, Method: Compositional matrix adjust. Identities = 228/606 (37%), Positives = 367/606 (60%), Gaps = 25/606 (4%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 E + +++ ++ Y+ Y++S I RA+PD+RDG KPVHRR+++ M E+G+ +A KK Sbjct: 5 EKLIPINIEDEMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMHELGVRANSAHKK 64 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 SARIVGEV+GK HPHGD SVYD++VR+AQ + RY L+ GQGNFG++DGDS AA RYTEA Sbjct: 65 SARIVGEVLGKYHPHGDTSVYDTMVRMAQEWSLRYMLVDGQGNFGSVDGDSPAAMRYTEA 124 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 RM +++E +L +D++ VD + +++ EP V P++ P LL NG SGIAVGMAT++P H Sbjct: 125 RMRKISEDMLADIDKETVDHKLNFDDTLEEPTVLPTRIPGLLVNGASGIAVGMATNMPPH 184 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 N+ E+ +A I+N +I I++L+++I PDFPTGG I + + E++ GRG +RA Sbjct: 185 NLTEVVNGTIAYIENNDIEIDELIQHIKAPDFPTGGTIY-GYDGVKEAFHTGRGRIVMRA 243 Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314 + +EEV G CI+V EIPYQV K+ +I+K A+L+ K++ + IRDES + +++ Sbjct: 244 KANIEEVN-GRECIIVNEIPYQVNKADMIKKTADLVNDKKLEGISTIRDESDRNGMRIVY 302 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 R P++++ +F + +++ F +N L GR PQ++ L ++ ++ HR EV+ R Sbjct: 303 VLKRDAIPNIVLNKLFKYTALQSSFSVNNIALVNGR-PQLLNLKELIHYFVEHRHEVVVR 361 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAI 431 R+ + ++ + R IL+GL+IA NIDE+IA+IR N D+ + ++ RF L+E Q AI Sbjct: 362 RTKYELRKAEERAHILEGLIIASDNIDEVIALIRASANADEARAKLIERFKLSEIQAKAI 421 Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491 + +RLR L LE+ ++++E D L+ E + +L+ ++ + I E+ VK+ + Sbjct: 422 VEMRLRQLTGLEQDKLRAEYDALMKTIEDLKDILDKKDRRMDIIKEELEVVKDKY----- 476 Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHS------VDLSAL 543 G R + E + D + + MI E + + IS+ G+I+ SL + V A Sbjct: 477 -GDERRSNIEYAGGDLSI--EDMIPDEKVVITISHAGYIKRTSLTEYKTQNRGGVGQKAS 533 Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQD 601 + D L+ +L + GK + + + G G AIQ LI++ + D Sbjct: 534 TTRNEDFLEHLFVGTNHQYMLFFTQKGKCFWMRVFEIPEGAKTSKGRAIQNLINIEQD-D 592 Query: 602 IVTAFV 607 V AF+ Sbjct: 593 KVMAFI 598 >gi|327460310|gb|EGF06647.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus sanguinis SK1057] Length = 826 Score = 412 bits (1058), Expect = e-112, Method: Compositional matrix adjust. Identities = 235/615 (38%), Positives = 370/615 (60%), Gaps = 40/615 (6%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 + N+ V+L ++ ++ YA+S I RA+PD+RDG KPVHRRI++ M+E+G+ K Sbjct: 10 DRNLVNVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPEKPHK 69 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSARI G+V+GK HPHGD S+Y+++VR+AQ + RY L+ G GNFG++DGD AAA RYTE Sbjct: 70 KSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYTE 129 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 ARM+++A +L+ ++++ VD+ D Y+ + EPVV P++FPNLL NG +GIAVGMAT+IP Sbjct: 130 ARMSKIALEMLRDINKNTVDYIDNYDASEREPVVLPARFPNLLVNGATGIAVGMATNIPP 189 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E +A ++DNP+ + ++E + GPDFPTG +++ + I +Y G+G +R Sbjct: 190 HNLGESIDAVKLVMDNPDATTRDIMEVLPGPDFPTGALVM-GKSGIHRAYETGKGSIVLR 248 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312 +R +EE+ G IVVTE PY V K+++ E I L+ KRI + +RDES E VR V Sbjct: 249 SRTEIEEMKNGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVRFV 308 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 + + R +++ ++F L+ M+T F NM + G VP+++ L IL ++ H++EV+ Sbjct: 309 IEVR-RDASAHVILNNLFKLTQMQTNFSFNMLAIQNG-VPKILSLREILLAYIEHQKEVV 366 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVD 429 RR++F + + R IL GLLIA +IDE+I IIRN + + + ++++F L+E Q Sbjct: 367 IRRTAFDKEKAEARAHILAGLLIALDHIDEVIRIIRNSETDAEAQAELMAKFELSERQSQ 426 Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489 AIL++RLR L LE +I+SE D L+A + +L ++ I E+ EVK F+ Sbjct: 427 AILDMRLRRLTGLERDKIQSEYDELIALIADLADILAKPERVIAIIKEELDEVKRKFADD 486 Query: 490 TDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSL--------KSHSVDL 540 RRT E+ + +L+ + +IE+ + + +SN+G+I+ L K + Sbjct: 487 -----RRT---ELMVGEVLSLEDEDLIEEADVLITLSNKGYIKRLNQAEFTAQKRGGRGV 538 Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLLSGRG 585 K+ D +K + T DR+L + G+ Y LP NLL Sbjct: 539 QGTGVKDDDFVKELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLK-LD 597 Query: 586 HGEAIQLLIDLNHNQ 600 GE IQ +I++ ++ Sbjct: 598 EGETIQTIINVQQDR 612 >gi|148927749|ref|ZP_01811184.1| DNA gyrase, A subunit [candidate division TM7 genomosp. GTL1] gi|147886903|gb|EDK72438.1| DNA gyrase, A subunit [candidate division TM7 genomosp. GTL1] Length = 843 Score = 412 bits (1058), Expect = e-112, Method: Compositional matrix adjust. Identities = 247/594 (41%), Positives = 359/594 (60%), Gaps = 33/594 (5%) Query: 7 SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66 S+S +L V++V +E+ +L Y++S I ERA+PD+RDG KPVHRRI+ +M + G Sbjct: 22 SHSRSLELRTVESV-----MEDSFLRYSMSVIIERALPDVRDGLKPVHRRILFSMEKNGW 76 Query: 67 DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126 G F KSARI G+V+GK HPHGD ++YDS+VRLAQ + RY L+ GQGNFG++DGD Sbjct: 77 RPGTRFVKSARITGDVMGKYHPHGDAAIYDSMVRLAQDWSMRYMLVDGQGNFGSMDGDPP 136 Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186 AA RYTEARM + +L +D++ VDFRD Y+ E+ EP V P+K PNLL NG GIAVG Sbjct: 137 AAARYTEARMAKPGAELLADLDKNTVDFRDNYDGEEREPTVLPAKLPNLLLNGQIGIAVG 196 Query: 187 MATSIPSHNVQEICEAALALIDNP-EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245 MAT+IP HN+ E+ +A + +ID P + ++E LL+Y+ GPDFPTGGI+ +S+ ++Y Sbjct: 197 MATNIPPHNLSELVDAVVHMIDYPDDTTLEDLLKYVKGPDFPTGGIVYGG-DSMRQAYAT 255 Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305 GRGG VRA +EE +G IVVTE+PY V K+ LIE+IAEL K+I ++D+RDES Sbjct: 256 GRGGITVRAIAEIEETKKGKHQIVVTEMPYAVNKATLIERIAELHKEKKI-TIQDVRDES 314 Query: 306 AE-DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364 A VR+V+ K S P ++ ++ ++ ++T F NM L G P+V+ L IL+E+ Sbjct: 315 ARGKVRLVIELKKDSY-PKKVLNQLYKMTALQTSFHYNMLALVDGIQPRVLGLQDILEEY 373 Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRF 421 L HR+ V+ RR+ F + R IL+G IA NIDE+I IIR N D+ ++ +F Sbjct: 374 LKHRKTVVRRRTEFELAKAKDRAHILEGWKIALDNIDEVIKIIRASQNTDEAARNLMDKF 433 Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481 L+E Q +IL L LR+L LE +I+ EL L A K++++L K+ I E+ E Sbjct: 434 KLSEVQAKSILALPLRTLTGLERQKIEDELAELRALIAKLEAILADEKEILKIIKAELLE 493 Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI-RSLKSH---- 536 +KE + RRT +S+ + +I E + V+++ +I R+L S Sbjct: 494 MKEKYGDE-----RRTKI--ISQELGKFSDEELIPDEDVIVLLTTENYIKRTLVSEYRRQ 546 Query: 537 ---SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLS 582 + KE D + + A T + +L + G K Y +PA +L + Sbjct: 547 HRGGKGKRGMTTKEMDVIDQLVPASTHEWLLFFTNRGRVFRIKTYEVPAASLTA 600 >gi|78188072|ref|YP_378410.1| DNA gyrase, subunit A [Chlorobium chlorochromatii CaD3] gi|78170271|gb|ABB27367.1| DNA gyrase subunit A [Chlorobium chlorochromatii CaD3] Length = 828 Score = 411 bits (1057), Expect = e-112, Method: Compositional matrix adjust. Identities = 255/697 (36%), Positives = 395/697 (56%), Gaps = 48/697 (6%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 E + +S+ + YL Y++S I RA+PD+RDG KPVHRR++ M E+GL G KK Sbjct: 4 ERIVPISIEEEMRGSYLDYSMSVIVSRALPDVRDGLKPVHRRVLFGMHELGLQAGKPHKK 63 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 SAR+VGEV+GK HPHGD +VYDSLVRL Q F RYPLI GQGNFG++DGDS AA RYTE Sbjct: 64 SARVVGEVLGKFHPHGDTAVYDSLVRLVQDFSLRYPLIDGQGNFGSVDGDSPAAMRYTEV 123 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 RM +A +L+ ++++ VDF +++ EP V PS PNLL NG SGIAVGMAT++ H Sbjct: 124 RMKSIAGEMLKDLEKETVDFALNFDDSLEEPTVLPSAIPNLLVNGASGIAVGMATNLAPH 183 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 N++E+ +ALI+ PEI I++L++++I PDFPTGGII E + ++Y GRG +RA Sbjct: 184 NLREVVNGIIALIEQPEIEIQELMKHVIAPDFPTGGIIY-GYEGVRQAYLTGRGKVVIRA 242 Query: 255 RWCVEEVGR-GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIV 312 R VE + G I+VTE+PYQV K RLIEKI EL+ K++ + DIRDES E +R+V Sbjct: 243 RALVEVTQKNGRESIIVTELPYQVNKVRLIEKIVELVHDKKVEGIADIRDESDREGMRLV 302 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 + K R +++ +++ + M+ F + +N+ + VP+++ L +++ ++ HR E++ Sbjct: 303 IELK-RDAVAKVVLNNLYKHTPMQDTFGV-INLALVDGVPKILNLKEMMQYYVKHRNEIV 360 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVD 429 RR+ F + A +RR IL+GL I N+DE+I+ IR ++ RF L+E Q Sbjct: 361 LRRTRFDLAAAERRAHILEGLKICLDNLDEVISTIRQSPDTATAQERLIERFGLSEIQAK 420 Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489 AIL +RL+ L +E +I +E +LA E++ +LNS ++Q I E+ +VK+++ Sbjct: 421 AILEMRLQRLTGMERQKIDTEYIEVLALIEELRFILNSPEKQMEIIREELLKVKDVYGDE 480 Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DLS 541 RRT E+ + + MI +E + + I++ G+I+ ++ Sbjct: 481 -----RRT---EIVPQEGDFSIEDMIAQEDVVITITHDGFIKRFPVSGYRRQARGGKGVT 532 Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLP-AGNLLSGRG--------HG 587 K D ++ A T + IL +T G K Y +P AG GR G Sbjct: 533 GAQAKNDDFIEHMFIASTHNYILFFTTSGRCYWLKVYEIPEAGRAARGRSLANIMELPPG 592 Query: 588 EAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE 647 E I+ I++ + ++ F+ +T +V K A E R G + + Sbjct: 593 EKIRTYINIRNFEE--PGFIVMATTHGIV---KKTAL----EEFSHPRRTGIAAITIDEG 643 Query: 648 EKMKLVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSR 683 +++ GDH ++ +N ++ F +++ M R Sbjct: 644 DELLDARLTDGDHQIILAKNSGFVVRFPENEVRPMGR 680 >gi|325922433|ref|ZP_08184201.1| DNA gyrase subunit A [Xanthomonas gardneri ATCC 19865] gi|325547090|gb|EGD18176.1| DNA gyrase subunit A [Xanthomonas gardneri ATCC 19865] Length = 903 Score = 411 bits (1057), Expect = e-112, Method: Compositional matrix adjust. Identities = 262/725 (36%), Positives = 384/725 (52%), Gaps = 65/725 (8%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 V+L + + YL YA+S I RA+PD RDG KPVHRR++ AM +G A+ KSARIV Sbjct: 11 VNLEDEMRKSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHVLGAHSNKAYFKSARIV 70 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGDQSVYD+LVR+AQPF RY ++ GQGNFG++DGDSAAA RYTE+RM+++ Sbjct: 71 GDVIGKYHPHGDQSVYDTLVRMAQPFSLRYMMVDGQGNFGSVDGDSAAAMRYTESRMSRL 130 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A ++ +D++ VDF+ Y+E++ EP V P++FP+LL NG++GIAVGMAT+IP HN+ E Sbjct: 131 AHELMADIDKETVDFQPNYDEKELEPTVMPTRFPSLLVNGSAGIAVGMATNIPPHNLTEA 190 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 A +ALID PE+ +E L+EYI GPDFPT GII I YR GRG R+RA+ VE Sbjct: 191 INACIALIDTPELDVEGLMEYIPGPDFPTAGII-NGTAGIAAGYRTGRGRVRMRAKADVE 249 Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319 G I+VTEIPYQV K+RLIEKIAEL+ K++ + ++RDES +D + R Sbjct: 250 VADNGREAIIVTEIPYQVNKARLIEKIAELVKEKKLEGISELRDESDKDGMRIYIEVKRG 309 Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379 ++++ +++ + ME+ F +NM L GR PQ+M L +L+ ++ HRREV+ RR+ F Sbjct: 310 ESAEVVLNNLYQQTQMESVFGINMVALIDGR-PQLMNLKQMLQAFIRHRREVVTRRTIFE 368 Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSR---------------- 420 ++ R +L+GL +A NIDE+I +I+ P+ M+++ Sbjct: 369 LRKARARAHVLEGLTVALANIDEMIELIKTSANPQEARERMLAKTWEPGLVGALLGAAGA 428 Query: 421 ------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKID 462 + LTE Q IL +RL L LE+ ++ E LL + + Sbjct: 429 EASKPEDLPPGVGLIKGFYQLTEVQASQILEMRLHRLTGLEQEKLTDEYKQLLEVIQGLI 488 Query: 463 SLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITV 522 +L + I E+ ++E + G R T S D L +I E + V Sbjct: 489 RILENPDVLLQVIRDELINIREEY------GDERRTEIRHSEEDLDILD--LISPEDVVV 540 Query: 523 VISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT 574 +S+ G+ + + + SA KE D + +T D +L ++ GK + Sbjct: 541 TLSHAGYAKRQPVSAYRAQRRGGRGRSAAATKEEDFIDQLWLVNTHDTLLTFTSSGKVFW 600 Query: 575 LPAGNL--LSGRGHGEAIQLLIDLNHN---QDIVTAFVYDSTCKLLVVSSKGNAFIVEES 629 LP L G I I L Q ++ Y + + G S Sbjct: 601 LPVYQLPEAGSNARGRPIINWIPLEPGERVQAVLPVREYADNRYVFFATRNGTVKKTPLS 660 Query: 630 EIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSRG---- 684 E +GK + + + + V GD V + N K + F + M R Sbjct: 661 EFAFRLARGKIAINLDEGDALVGVALTDGDRDVLLFASNGKTVRFGESTVRSMGRTATGV 720 Query: 685 KGVRL 689 +G+RL Sbjct: 721 RGIRL 725 >gi|153009512|ref|YP_001370727.1| DNA gyrase subunit A [Ochrobactrum anthropi ATCC 49188] gi|151561400|gb|ABS14898.1| DNA gyrase, A subunit [Ochrobactrum anthropi ATCC 49188] Length = 923 Score = 411 bits (1057), Expect = e-112, Method: Compositional matrix adjust. Identities = 248/679 (36%), Positives = 378/679 (55%), Gaps = 61/679 (8%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 ++ +S+ ++ YL YA+S I RA+PD+RDG KPVHRRI+HAM+EM L + ++KSA Sbjct: 12 IEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAMNEMNLAYNRPYRKSA 71 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 +VGEV+GK HPHGD S+YD+LVR+AQ F R PL+ GQGNFG+IDGD AA RYTE R+ Sbjct: 72 GVVGEVMGKYHPHGDASIYDALVRMAQDFSMRDPLVDGQGNFGSIDGDPPAAMRYTECRL 131 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 ++ E IL +D+D VDF+D Y+ + EPVV P++FPNLL NG+ GIAVGMAT+IP HN+ Sbjct: 132 EKLTESILSDIDKDTVDFQDNYDGREQEPVVMPARFPNLLVNGSGGIAVGMATNIPPHNL 191 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ + +ALI+NP I +E+++E I GPDFPTGGII+ R I +Y GRG +R R Sbjct: 192 GEVIDGCVALIENPAIQLEEMIEIIPGPDFPTGGIIL-GRAGINSAYTTGRGSVIMRGRA 250 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316 +E + I++TEIPYQV K+ +IEK+AEL+ KRI + D+RDES + V+ Sbjct: 251 TIEPMRGDREAIIITEIPYQVNKASMIEKMAELVRDKRIEGISDLRDESDREGYRVVVEL 310 Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376 R D+++ ++ + ++T F NM L+ G+ Q+ LD +L+ ++A R EV+ RR+ Sbjct: 311 KRDAVADVVLNQLYRYTPLQTSFGCNMVALNGGKPEQLNLLD-MLRAFVAFREEVVTRRT 369 Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP----KPVMVSR------------ 420 F + R +L GL IA NIDE+IA+IR P + +M R Sbjct: 370 KFLLNKARDRAHVLVGLAIAVANIDEVIALIRRAPDPTTAREQLMERRWPAVDVAPLIRL 429 Query: 421 -------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467 ++L+E Q AIL+LRL+ L L ++ EL+ + E +L+S Sbjct: 430 IDDPRHRINEDDTYNLSEEQARAILDLRLQRLTALGRDEVADELNKIGEEIRDYLDILSS 489 Query: 468 GKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNR 527 + + E+ V++ F+ RRT E+ + +I +E + V +S+ Sbjct: 490 RLRVMTIVKDEMIAVRDEFATP-----RRT---EIGFGGAEMDDEDLIAREDMVVTVSHA 541 Query: 528 GWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYT 574 G+I R+ + S + K+ D + A+T +L S+ G K + Sbjct: 542 GYIKRVPLTTYRAQRRGGKGRSGMATKDEDFVTRLFVANTHTPVLFFSSRGIVYKEKVWR 601 Query: 575 LPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD------STCKLLVVSSKGNAFIVEE 628 LP G S G+A+ ++ L + I T + ++ +++G + Sbjct: 602 LPVGTPQS---RGKALINMLPLQQGERITTIMPLPEDEESWANLDVMFSTTRGTVRRNKL 658 Query: 629 SEIIANTRKGKTFLKVSSE 647 S+ + R GK +K+ E Sbjct: 659 SDFVQVNRNGKIAMKLEDE 677 >gi|315222945|ref|ZP_07864824.1| DNA gyrase, A subunit [Streptococcus anginosus F0211] gi|315187895|gb|EFU21631.1| DNA gyrase, A subunit [Streptococcus anginosus F0211] Length = 815 Score = 411 bits (1057), Expect = e-112, Method: Compositional matrix adjust. Identities = 252/712 (35%), Positives = 406/712 (57%), Gaps = 55/712 (7%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 + N+ V+L ++ ++ YA+S I RA+PD+RDG KPVHRRI++ M+E+G+ K Sbjct: 3 DNNLVNVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHK 62 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSARI G+V+GK HPHGD S+Y+++VR+AQ + R+ L+ G GNFG++DGD AA RYTE Sbjct: 63 KSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGPAAQRYTE 122 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 ARM++++ +L+ ++++ VDF D Y+ + EP+V PS+FPNLL NG +GIAVGMAT+IP Sbjct: 123 ARMSKISLEMLRDINKNTVDFADNYDSSEREPLVLPSRFPNLLVNGATGIAVGMATNIPP 182 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E +A ++DNP+++ L+E + GPDFPTG +++ + I +Y G+G +R Sbjct: 183 HNLCETIDAVKLVMDNPDVTTRDLMEVLPGPDFPTGALVM-GKSGIHRAYETGKGSIVLR 241 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312 AR +EE G IVVTE PY V K+++ E I L+ KRI + +RDES E VR + Sbjct: 242 ARTEIEETKSGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVRFI 301 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 + K R +++ ++F L+ M+T F NM + G VP+++ L IL ++ H++EV+ Sbjct: 302 IDVK-RDASAHVILNNLFKLTQMQTNFSFNMLAIQNG-VPKILSLREILLAYIEHQKEVV 359 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVD 429 RR+ F + + R IL GLLIA +IDE+I IIRN + + + +++R+ L+E Q Sbjct: 360 TRRTVFDKEKAEARAHILAGLLIALDHIDEVIRIIRNSETDAEAQAELMARYELSERQSQ 419 Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489 AIL++RLR L LE +I+SE D+L+ + +L ++ I E+ E+K FS Sbjct: 420 AILDMRLRRLTGLERDKIQSEYDDLMKLIADLADILAKPERVVAIIKEELEEIKRKFSDE 479 Query: 490 TDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSLKSHSVD--------L 540 RRT E+ + +L+ + +IE+ + + +SN+G+I+ L + Sbjct: 480 -----RRT---ELMVGEVLSLEDEDLIEEADVLITLSNKGYIKRLNQDEFTAQRRGGRGI 531 Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLLSGRG 585 K+ D ++ + T DR+L + G+ Y LP NLL Sbjct: 532 QGTGVKDDDFVRELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYGRTAKGLPIVNLLK-LD 590 Query: 586 HGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK-GKTFLKV 644 GE IQ +I++ D ++++ +T +V + F AN R+ G L + Sbjct: 591 EGETIQTIINVQAEHDD-HSYLFFTTRYGVVKRTSVTEF--------ANIRQNGLKALNL 641 Query: 645 SSEEKMKLVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSRG----KGVRLQS 691 E+++ V G ++G + F+ +Q+ M R +GV L++ Sbjct: 642 KDEDELINVFLTNGHADIIIGTKMGYAVRFNENQVRNMGRAATGVRGVNLRT 693 >gi|189345659|ref|YP_001942188.1| DNA gyrase, A subunit [Chlorobium limicola DSM 245] gi|189339806|gb|ACD89209.1| DNA gyrase, A subunit [Chlorobium limicola DSM 245] Length = 828 Score = 411 bits (1057), Expect = e-112, Method: Compositional matrix adjust. Identities = 235/596 (39%), Positives = 351/596 (58%), Gaps = 28/596 (4%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 E + +S+ + + YL Y++S I RA+PD+RDG KPVHRR+++ M E+GL G KK Sbjct: 4 ERILPISIEEEMRDSYLDYSMSVIVSRALPDVRDGLKPVHRRVLYGMHELGLQAGKPHKK 63 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 SARIVGEV+GK HPHGD +VYDSLVRL Q F RYPLI GQGNFG++DGDS AA RYTE Sbjct: 64 SARIVGEVLGKFHPHGDSAVYDSLVRLVQDFSLRYPLIDGQGNFGSVDGDSPAAMRYTEV 123 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 RM +A +L+ +D++ VDF +++ EP V PS PNLL NG+SGIAVGMAT+IP Sbjct: 124 RMKPIAGEMLKDLDKETVDFSLNFDDSLEEPTVLPSAIPNLLVNGSSGIAVGMATNIPPQ 183 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 N++E+ + +A+I+NPEI I +++++I PDFPTGGII E + ++Y GRG +RA Sbjct: 184 NLREVVDGIIAVIENPEIEIADIMKHVIAPDFPTGGIIY-GYEGVRQAYLTGRGKVVIRA 242 Query: 255 RWCVEEVGR-GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313 R VE + G I+VTE+PYQV K RLIEKI EL+ K++ + DIRDES D ++ Sbjct: 243 RALVEVTQKNGRESIIVTELPYQVNKVRLIEKIVELVHDKKLDGIADIRDESDRDGMRLV 302 Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373 R +++ +++ + M+ F + M L G VP+V+ L ++ ++ HR E++ Sbjct: 303 IELKRDAVAKVVLNNLYKHTPMQETFGVIMLALVDG-VPRVLNLKEMMHYYVKHRNEIVL 361 Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDA 430 RR+ F + A ++R IL+GL I N+DE+I IR + + ++ RF L+E Q A Sbjct: 362 RRTQFDLTAAEKRAHILEGLKICLDNLDEVITTIRESPDTSTAQERLMERFGLSEIQSKA 421 Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490 IL +RL+ L +E +I +E L + + S+L S ++Q I E+ +V+E++ Sbjct: 422 ILEMRLQRLTGMERKKIDTEYQETLLLIDGLRSILASPQKQMQIIREELLKVREVYGDE- 480 Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DLSA 542 RRT E+ + + MI +E + + I++ G+I+ ++ Sbjct: 481 ----RRT---EIVPQEGDFSIEDMIAQEDVVITITHDGFIKRFPVSGYRRQARGGKGVTG 533 Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLP-AGNLLSGRGHGEAIQL 592 K D ++ A T + IL + G K Y +P AG GR ++L Sbjct: 534 AQAKHDDFIEHMFIASTHNYILFFTNTGRCYWLKVYEIPEAGRAARGRSLANIMEL 589 >gi|332993179|gb|AEF03234.1| DNA gyrase, A subunit [Alteromonas sp. SN2] Length = 898 Score = 411 bits (1057), Expect = e-112, Method: Compositional matrix adjust. Identities = 255/636 (40%), Positives = 366/636 (57%), Gaps = 65/636 (10%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 V++ L+ YL YA+S I RA+PD+RDG KPVHRR++ AM+E+ DF +KKSAR+V Sbjct: 11 VNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELKNDFNKPYKKSARVV 70 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG++DGDSAAA RYTE RM ++ Sbjct: 71 GDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRMAKI 130 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A +L +D++ VDF Y+ + P V P+K PNLL NG+SGIAVGMAT+IP HN+ E+ Sbjct: 131 AHELLADLDKETVDFVPNYDGTEHIPEVLPTKVPNLLVNGSSGIAVGMATNIPPHNLTEV 190 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 +ALI +P I+I+ L+ +I GPDFPT +I R+ I ++YR GRG +RA+ +E Sbjct: 191 INGCIALIKDPSITIDDLMLHIPGPDFPTAAMI-SGRKGIDDAYRTGRGKIYMRAKAEIE 249 Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKNR 318 G I++ EIPYQV K+RLIEKIAEL+ KRI + +RDES +D +RIV+ K R Sbjct: 250 TEDNGKETIIINEIPYQVNKARLIEKIAELVKEKRIEGISALRDESDKDGMRIVVEVK-R 308 Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378 + ++L+ ++ + ++T F +NM L G+ P+V L L+ ++ HRREV+ RR+ F Sbjct: 309 NESAEVLLNHLYANTQLQTVFGINMVALDNGQ-PKVFNLKETLEAFILHRREVVTRRTVF 367 Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR--------------- 420 ++ R IL+GL IA NID II +I+ P K +V++ Sbjct: 368 ELRKARDRAHILEGLAIALANIDPIIELIKASPGPADAKKALVAQGWDLGDVSQMLERAG 427 Query: 421 -------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKI 461 + LTE Q AIL+LRL L LE +I E LL ++ Sbjct: 428 DDAARPDWLMPEFGIRDGQYFLTEQQAQAILDLRLHRLTGLEHEKILEEYKQLLEVIAEL 487 Query: 462 DSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPIT 521 +LNS ++ I E+ +++E F + RRT E++ A + +IE+E + Sbjct: 488 LHILNSPERLMEVIEEELEKIREEFGDA-----RRT---EITAASHDIDIEDLIEQEDVV 539 Query: 522 VVISNRGWIRSLKSHSVD--------LSALHFKEGDSLKIALHAHTTDRILLLSTDG--- 570 V +S G+++ K + + SA K D ++ L A+T D IL ST G Sbjct: 540 VTLSREGYVKYQKLNDYESQRRGGRGKSATKMKNEDFIEKLLVANTHDHILCFSTRGRLY 599 Query: 571 --KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVT 604 K Y LP L S G I ++ L N+ I Sbjct: 600 WLKVYQLP---LASRNARGRPIVNILPLEDNERITA 632 >gi|315633980|ref|ZP_07889269.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Aggregatibacter segnis ATCC 33393] gi|315477230|gb|EFU67973.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Aggregatibacter segnis ATCC 33393] Length = 885 Score = 411 bits (1057), Expect = e-112, Method: Compositional matrix adjust. Identities = 252/660 (38%), Positives = 385/660 (58%), Gaps = 67/660 (10%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 +++ VS+ L+ YL YA+S I RA+PD+RDG KPVHRR++ AM E G + ++K Sbjct: 6 QDITPVSIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEGGNAYNKPYRK 65 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 SARIVG+VIGK HPHGD +VYD+LVR+AQPF RY L+ GQGNFG++DGD+ AA RYTEA Sbjct: 66 SARIVGDVIGKYHPHGDSAVYDTLVRMAQPFSLRYMLVDGQGNFGSVDGDAPAAMRYTEA 125 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 RMT++A +L +D++ V+F Y+ + P V P+K P LL NG+SGIAVGMAT+IP H Sbjct: 126 RMTKIAHELLADLDKETVNFVPNYDGSEQIPEVLPTKVPALLVNGSSGIAVGMATNIPPH 185 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 N+ E+ + LA I+N +I+I++L+ +I GPDFPT +I R+ I E+Y+ GRG VRA Sbjct: 186 NLGEVLDGCLAYIENNDITIDELMSHIPGPDFPTAALI-NGRKGIEEAYKTGRGKIYVRA 244 Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVL 313 R +E +G I+V EIPYQV K++LIEKIAE + K+I + +RDES +D +RIV+ Sbjct: 245 RAEIETDEKGRESIIVNEIPYQVNKAKLIEKIAEFVKEKKIEGISGLRDESDKDGMRIVI 304 Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373 K ++ ++++ +++ L+ M+ F +N+ L G+ P+++ L +++ ++ HRREV+ Sbjct: 305 EIKRDAVG-EVVLNNLYALTQMQVTFGINIVALDHGQ-PKLLNLKQLIEAFVLHRREVVT 362 Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSR---------- 420 RR+ F ++ R IL+GL IA N+D II +IR P+ +++R Sbjct: 363 RRTIFELRKARERTHILEGLAIALANVDPIIELIRQAPNPESAKRELLARPWQLGHVAEM 422 Query: 421 ------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLA 456 + LTE Q AIL+LRL+ L L +I E LL Sbjct: 423 LAATGVDAARPEDLDEQYGIRDGLYYLTEVQAQAILDLRLQKLTNLGHDEILDEYKKLLE 482 Query: 457 EKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE 516 ++ +L S ++ I E+ +++E F+ RRT E++ A + +I Sbjct: 483 AIGELLYILRSPERLMEVIREELEQIREQFNDP-----RRT---EITAASGDINLEDLIA 534 Query: 517 KEPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568 +E + V +S+ G+++ + + SA KE D ++ L A+T D IL S+ Sbjct: 535 QEDVVVTLSHEGYVKYQPISDYEAQRRGGKGKSATKMKEEDFIEKLLVANTHDTILCFSS 594 Query: 569 DGKAYTLPAGNL-LSGRG-HGEAIQLLIDLNHNQDI-----VTAFVYDSTCKLLVVSSKG 621 G+ Y L L + RG G I ++ LN N+ I VTA+ D K +V+++ G Sbjct: 595 RGRLYWLKVYQLPQASRGSRGRPIVNILPLNENERITAILPVTAYEED---KFVVMATAG 651 >gi|290967785|ref|ZP_06559338.1| DNA gyrase, A subunit [Megasphaera genomosp. type_1 str. 28L] gi|290782144|gb|EFD94719.1| DNA gyrase, A subunit [Megasphaera genomosp. type_1 str. 28L] Length = 817 Score = 411 bits (1057), Expect = e-112, Method: Compositional matrix adjust. Identities = 273/776 (35%), Positives = 413/776 (53%), Gaps = 76/776 (9%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 + V V L ++ Y+ YA+S I RA+PD+RDG KPVHRRI++AM E G+ +KK Sbjct: 7 DKVLPVCLENEMQTSYIDYAMSVIITRALPDVRDGLKPVHRRILYAMHEAGMTPNKPYKK 66 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 SARIVGEV+GK HPHGD+SVYD+ VRLAQ F RYPL+ G GNFG++DGDSAAA RYTE Sbjct: 67 SARIVGEVLGKYHPHGDRSVYDATVRLAQDFSTRYPLVDGHGNFGSVDGDSAAAMRYTEV 126 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 RM ++ +L +D++ VDF Y+ EP V PSK PNLL NG++GIAVGMAT+IP H Sbjct: 127 RMAKITGEMLADIDKETVDFMPNYDGSLQEPTVLPSKIPNLLVNGSAGIAVGMATNIPPH 186 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 N+ E+ + + LID P+ S+E+++ I GPDFPTG I+ RE I+++Y GRG ++R+ Sbjct: 187 NLGEVVDGCVTLIDKPDASLEEIMTKIKGPDFPTGAKIM-GREGILKAYATGRGSVKMRS 245 Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314 VE + +G IVVTEIPYQV K+R+IE IAEL + I + +RDES ++ Sbjct: 246 CAAVEPMTKGKNRIVVTEIPYQVNKARVIESIAELTRNREIDGITALRDESDRKGLRIVI 305 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 ++PD+++ ++ + ++ F + M L G P+V+ L +L+ +L H+R+V+ R Sbjct: 306 ELRADVNPDIILNKLYKHTQLQETFGIIMLALVDGH-PRVLSLLQVLQYYLGHQRQVITR 364 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAI 431 R F + R IL+GLLIA +IDE+I IR ++ K +++ F LT+ Q AI Sbjct: 365 RCRFELDKALARAHILEGLLIALDHIDEVIRTIRESATDETAKTSLMTAFGLTDKQAVAI 424 Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491 L++RLR L LE +I+ E L + S+L ++ + E+ E K+ F Sbjct: 425 LDMRLRRLTGLEREKIEEEYRELEERIAYLRSVLADDRKVMEIVKTELLEAKKRFGDV-- 482 Query: 492 LGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSLKS---HSVD-----LSA 542 RRT AD + L + MI E + + ++ RG+++ + + H+ + + Sbjct: 483 ---RRTQLA----ADTSELGVEDMIPDERMVLTLTRRGYMKRINANVYHTQNKGGRGIKG 535 Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRG----------HG 587 + K+ D++ L+ +L + G KAY +P N + +G G Sbjct: 536 MGTKDEDAVNHLLYTSALHTVLFFTNFGRVYRLKAYEIPEANSRNSKGIAAINILPLSTG 595 Query: 588 EAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE 647 E + LIDL+ D + L + + G E +E R G + + Sbjct: 596 EKVNALIDLDQ---------ADPSMNLFMATENGLVKKTELAEFKNVRRNGLIAISL--- 643 Query: 648 EKMKLVVKVTGDHVAVV----GENRKLL--------IFSIDQIPEMSRG-KGVRLQSYKD 694 + GDH+A V G+ R +L F+ + M R +GVR S Sbjct: 644 --------IEGDHLAKVRLTNGKQRIILATKLGMAICFNESDVRPMGRNTRGVRGISLAP 695 Query: 695 GG--ISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG 748 G I + C+ LT + + + N + RGG G+ K P++G Sbjct: 696 GDRVIGADVLAPDCQVLTVSEEG---FGKRNNMDAYKIQLRGGKGAKNFKITPKTG 748 >gi|118574932|gb|ABL07043.1| DNA gyrase subunit A [Arcobacter cibarius] Length = 858 Score = 411 bits (1057), Expect = e-112, Method: Compositional matrix adjust. Identities = 241/615 (39%), Positives = 372/615 (60%), Gaps = 40/615 (6%) Query: 10 NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69 N +++ V++ +++ YL Y++S I RA+PD +DG KPVHRRI++AM ++ + Sbjct: 3 NLFENQDIINVNIEDSVKASYLDYSMSVIIGRALPDAKDGLKPVHRRILYAMHDLNVTSK 62 Query: 70 AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129 AA+KKSARIVG+VIGK HPHGD SVYD+LVR+AQ F R PL+ GQGNFG++DGD+AAA Sbjct: 63 AAYKKSARIVGDVIGKYHPHGDSSVYDALVRMAQSFSMRAPLVDGQGNFGSVDGDNAAAM 122 Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189 RYTEARMT++AE +L+ +D+D V+F Y++ EP V P++ P LL NG+ GIAVGMAT Sbjct: 123 RYTEARMTRIAEEVLRDLDKDTVNFVPNYDDTMKEPAVLPTRVPTLLLNGSEGIAVGMAT 182 Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249 IP HN+ E+ +A L LIDNP L+E+I GPDFPTGG I R I+++Y GRG Sbjct: 183 KIPPHNLGELLDAILHLIDNPSAEALDLMEFIQGPDFPTGGTIF-GRRGIIDAYTTGRGR 241 Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AED 308 R+RA+ +E + IV+ E+PYQV K+RLIE IA L K+I + ++RDES E Sbjct: 242 VRIRAKHHIETKAK-KEIIVIDELPYQVNKARLIELIANLAKDKQIEGISEVRDESDREG 300 Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368 +R+V+ K ++ ++++ +++ + MET F + + + + P+V L IL +L+HR Sbjct: 301 IRVVIELKKEAM-AEIVLNNLYKSTPMETTFGIIL-LAVYNKEPKVFNLPEILNIFLSHR 358 Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTE 425 + V+ RR+ F ++ R IL+GL IA NIDE++ IIR N+ K + RF+L+ Sbjct: 359 KTVIIRRTIFDLEKAKARAHILEGLKIAVDNIDEVVKIIRSSSNDADAKERLEVRFNLSH 418 Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485 Q AIL++RL L L+ ++ +E + L+ +++++L S ++ I E+ E+KE Sbjct: 419 IQSQAILDMRLGRLTGLQRDKLDAEYNELMILIAELEAILRSEEKLNEIIKEELTEIKEK 478 Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545 FS RRT E+ + + +I EP+ V I++ G+++ + S + Sbjct: 479 FSNP-----RRT---EIEDSYDEIDVEDLIPNEPMVVTITHNGYVKRVPIKSYEKQ---- 526 Query: 546 KEGDSLKIALHAH------------TTDRILLLSTDG-----KAYTLPAGNLLSGRGHGE 588 + G K+A+ H T D ++ ++ G K Y +P G S G+ Sbjct: 527 RRGGKGKVAVTTHDDDFIERFFVSNTHDTLMFVTNMGQLYWLKVYRIPEG---SRTAKGK 583 Query: 589 AIQLLIDLNHNQDIV 603 A+ LI+L ++ I+ Sbjct: 584 AVVNLINLRPDEKIM 598 >gi|260549312|ref|ZP_05823532.1| type IIA topoisomerase [Acinetobacter sp. RUH2624] gi|260407718|gb|EEX01191.1| type IIA topoisomerase [Acinetobacter sp. RUH2624] Length = 904 Score = 411 bits (1057), Expect = e-112, Method: Compositional matrix adjust. Identities = 268/734 (36%), Positives = 413/734 (56%), Gaps = 76/734 (10%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 ++ +++ L+ YL YA+S I RA+PD+RDG KPVHRR+++AM E+G D+ A+KKSA Sbjct: 6 IRPIAIEDELKHSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMHELGNDYNKAYKKSA 65 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD +VY+++VR+AQ F RY L+ GQGNFG+IDGDSAAA RYTE RM Sbjct: 66 RVVGDVIGKYHPHGDSAVYETIVRMAQDFSLRYLLVDGQGNFGSIDGDSAAAMRYTEVRM 125 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 T++A +L +++D VD+ D Y+ + P V P++ PNLL NG +GIAVGMAT++ HN+ Sbjct: 126 TKLAHELLADLEKDTVDWEDNYDGSERIPEVLPTRVPNLLINGAAGIAVGMATNMAPHNM 185 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ A LA DNP ISIE L+EYI GPDFPTGGII + IV++YR G+G +R ++ Sbjct: 186 TEVVNACLAYADNPNISIEGLMEYITGPDFPTGGIIY-GKSGIVDAYRTGKGRLHIRGKY 244 Query: 257 CVEEVGR-GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLF 314 EE + G IV TEIPYQV K+R+IE+IAEL+ K++ + ++RDES E +RI + Sbjct: 245 HFEEDEKTGRTTIVFTEIPYQVNKARVIERIAELVKEKKLEGISELRDESDKEGMRIAID 304 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K R + ++++ ++F+ + +E F +NM L G+ P++M L I+ ++ HR+EV+ R Sbjct: 305 LK-RGENAEVVVNNLFLNTQLENSFSINMVCLDNGQ-PKLMNLKDIIAAFIRHRQEVVTR 362 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN------------------------- 409 R+ F ++ R IL+GL +A NIDEII I+ Sbjct: 363 RTMFELRKARERGHILEGLTVALANIDEIIETIKTSANPAEARERLLAGEWAGGGVVSLL 422 Query: 410 ---------------EDKPKPVMVSR--FSLTENQVDAILNLRLRSLRKLEEYQIKSELD 452 ED +P +S + L+ QV AIL LRL L LE+ ++ +E Sbjct: 423 EKAGAISVRPDEIEGEDPNRPFGLSDSIYRLSPTQVGAILELRLHRLTGLEQDKLHAEYT 482 Query: 453 NLLAEKEKIDSLLNSGKQQWNQIACEIR-EVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511 +L + ++ ++LN +N + IR E+ ++ + D RRT E SR D + Sbjct: 483 EILGQIAELTAILN----DFNLLMGVIREELAQVLQQYGDA--RRTEIVE-SRVD--FCR 533 Query: 512 QAMIEKEPITVVISNRGWIRS--LKSHSVDL------SALHFKEGDSLKIALHAHTTDRI 563 + +I +E + + +S G+ ++ L + SA K+ D ++ + A + Sbjct: 534 EDLIPEEQVVLTVSQTGYAKTQPLSDYQAQRRGGRGKSATSMKDDDFIQHLIVASNHATV 593 Query: 564 LLLSTDGKAYTLPAGNL-LSGRG-HGEAIQLLIDLNHNQDIVTAFV----YDSTCKLLVV 617 L + GK Y L + + RG G I L+ L+ + VTA + + + + Sbjct: 594 LCFTNVGKVYRLKVFEVPQASRGAKGRPIVNLLPLDATE-TVTAILPLTEFPENHYVFMA 652 Query: 618 SSKGNAFIVEESEIIANTR-KGKTFLKVSSEEKMKLVVKVTGDHVAVVGENR-KLLIFSI 675 ++ G V E E AN R G ++++ E+ + V G+ ++ N K + F+ Sbjct: 653 TASGTVKRV-ELEQFANIRSNGLRAIELNEEDTLIGVAITDGNQQIMLFSNEGKAIRFAE 711 Query: 676 DQIPEMSR-GKGVR 688 + M R KGVR Sbjct: 712 TDVRAMGRTAKGVR 725 >gi|327489848|gb|EGF21638.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus sanguinis SK1058] Length = 826 Score = 411 bits (1057), Expect = e-112, Method: Compositional matrix adjust. Identities = 256/713 (35%), Positives = 410/713 (57%), Gaps = 52/713 (7%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 + N+ V+L ++ ++ YA+S I RA+PD+RDG KPVHRRI++ M+E+G+ K Sbjct: 10 DRNLVNVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPEKPHK 69 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSARI G+V+GK HPHGD S+Y+++VR+AQ + RY L+ G GNFG++DGD AAA RYTE Sbjct: 70 KSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYTE 129 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 ARM+++A +L+ ++++ VD+ D Y+ + EPVV P++FPNLL NG +GIAVGMAT+IP Sbjct: 130 ARMSKIALEMLRDINKNTVDYIDNYDASEREPVVLPARFPNLLVNGATGIAVGMATNIPP 189 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E +A ++DNP+ + ++E + GPDFPTG +++ + I +Y G+G +R Sbjct: 190 HNLGESIDAVKLVMDNPDATTRDIMEVLPGPDFPTGALVM-GKSGIHRAYETGKGSIVLR 248 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312 +R +EE+ G IVVTE PY V K+++ E I L+ KRI + +RDES E VR V Sbjct: 249 SRTEIEEMKNGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVRFV 308 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 + + R + +++ ++F L+ M+T F NM + G VP+++ L IL ++ H++EV+ Sbjct: 309 IEVR-RDVSAHVILNNLFKLTQMQTNFSFNMLAIQNG-VPKILSLREILLAYIEHQKEVV 366 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVD 429 RR+ F + + R IL GLLIA +IDE+I IIRN + + + ++++F L+E Q Sbjct: 367 TRRTVFDKEKAEARAHILAGLLIALDHIDEVIRIIRNSETDAEAQAELMAKFELSERQSQ 426 Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489 AIL++RLR L LE +I+SE D L+A + +L ++ I E+ EVK F+ Sbjct: 427 AILDMRLRRLTGLERDKIQSEYDELIALIADLADILAKPERVIAIIKEELDEVKRKFADD 486 Query: 490 TDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSL--------KSHSVDL 540 RRT E+ + +L+ + +IE+ + + +SN+G+I+ L K + Sbjct: 487 -----RRT---ELMVGEVLSLEDEDLIEEADVLITLSNKGYIKRLNQAEFTAQKRGGRGV 538 Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLLSGRG 585 K+ D +K + T DR+L + G+ Y LP NLL Sbjct: 539 QGTGVKDDDFVKELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLK-LD 597 Query: 586 HGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK-GKTFLKV 644 GE IQ +I++ ++ ++++ +T +V + F AN R+ G L + Sbjct: 598 EGETIQTIINVQQDRSD-DSYLFFTTRHGVVKRTSVTEF--------ANIRQNGLKALNL 648 Query: 645 SSEEKMKLVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSR-GKGVRLQSYKDG 695 E+++ V G ++G + F+ + MSR GVR + +DG Sbjct: 649 KDEDELINVFLTDGAADVIIGTKFGYSVRFNETAVRSMSRIATGVRGVNLRDG 701 >gi|317492550|ref|ZP_07950977.1| DNA gyrase, subunit A [Enterobacteriaceae bacterium 9_2_54FAA] gi|316919300|gb|EFV40632.1| DNA gyrase, subunit A [Enterobacteriaceae bacterium 9_2_54FAA] Length = 882 Score = 411 bits (1057), Expect = e-112, Method: Compositional matrix adjust. Identities = 254/637 (39%), Positives = 371/637 (58%), Gaps = 60/637 (9%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + V++ L+ YL YA+S I RA+PD+RDG KPVHRR++ AM+ +G D+ A+KKSA Sbjct: 8 ITPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKKSA 67 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 RIVG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG++DGDSAAA RYTE RM Sbjct: 68 RIVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRM 127 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 +++A +L ++++ VDF Y+ + P V P+K PNLL NG+SGIAVGMAT+IP HN+ Sbjct: 128 SKIAHELLADLEKETVDFVPNYDGTEQIPAVLPTKVPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ LA ID+ I++E L+++I GPDFPT II R I E+YR GRG +RA+ Sbjct: 188 NEVINGCLAYIDDENITVEGLMQHIPGPDFPTAAII-NGRRGIEEAYRTGRGKVYIRAKA 246 Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314 VE + G I+V EIPYQV K+RLIEKIAEL+ KR+ + +RDES +D +RIV+ Sbjct: 247 EVEADEKSGRETIIVHEIPYQVNKARLIEKIAELVKEKRLEGISALRDESDKDGMRIVIE 306 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K ++ ++++ ++ L+ M+ F +NM L G+ P+++ L L+ ++ HRREV+ R Sbjct: 307 IKRDAVG-EVVLNHLYSLTQMQVTFGINMVALHQGQ-PKLLTLKDCLQAFVRHRREVVTR 364 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----------- 420 R+ F ++ R IL+GL IA NID II +IR+ P K ++V+R Sbjct: 365 RTIFELRKARDRAHILEGLAIALSNIDPIIELIRHAPNPAEAKALLVARGWALGTVAAML 424 Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457 + LTE Q AIL+LRL+ L LE ++ E LL + Sbjct: 425 ERAGDNAARPEWLEPQFGIRDGHYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQ 484 Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517 + +L S + I E+ V++ F + RRT E + AD + +I + Sbjct: 485 IAALIFILESPDRLMEVIREELIAVRDQFGDA-----RRTEITE-NTADINI--EDLISQ 536 Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569 E + V +S++G+++ + + SA KE D + L A+T D IL S+ Sbjct: 537 EDVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSR 596 Query: 570 GKAYTLPAGNLL-SGRG-HGEAIQLLIDLNHNQDIVT 604 G+ Y + L + RG G I L+ L N+ I Sbjct: 597 GRLYWMKVYQLPEASRGARGRPIINLLPLEANERITA 633 >gi|293609890|ref|ZP_06692192.1| hypothetical protein HMPREF0013_02041 [Acinetobacter sp. SH024] gi|292828342|gb|EFF86705.1| hypothetical protein HMPREF0013_02041 [Acinetobacter sp. SH024] Length = 904 Score = 411 bits (1057), Expect = e-112, Method: Compositional matrix adjust. Identities = 268/733 (36%), Positives = 413/733 (56%), Gaps = 74/733 (10%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 ++ +++ L+ YL YA+S I RA+PD+RDG KPVHRR+++AM E+G D+ A+KKSA Sbjct: 6 IRPIAIEDELKHSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMHELGNDYNKAYKKSA 65 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD +VY+++VR+AQ F RY L+ GQGNFG+IDGDSAAA RYTE RM Sbjct: 66 RVVGDVIGKYHPHGDSAVYETIVRMAQDFSLRYLLVDGQGNFGSIDGDSAAAMRYTEVRM 125 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 T++A +L +++D VD+ D Y+ + P V P++ PNLL NG +GIAVGMAT++ HN+ Sbjct: 126 TKLAHELLADLEKDTVDWEDNYDGSERIPEVLPTRVPNLLINGAAGIAVGMATNMAPHNM 185 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ A LA DNP ISIE L+EYI GPDFPTGGII + IV++YR G+G +R ++ Sbjct: 186 TEVVNACLAYADNPNISIEGLMEYITGPDFPTGGIIY-GKSGIVDAYRTGKGRLHIRGKY 244 Query: 257 CVEEVGR-GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLF 314 EE + G IV TEIPYQV K+R+IE+IAEL+ K++ + ++RDES E +RI + Sbjct: 245 HFEEDEKTGRTTIVFTEIPYQVNKARVIERIAELVKEKKLEGISELRDESDKEGMRIAID 304 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K R + ++++ ++F+ + +E F +NM L G+ P++M L I+ ++ HR+EV+ R Sbjct: 305 LK-RGENAEVVVNNLFLNTQLENSFSINMVCLDNGQ-PKLMNLKDIIAAFIRHRQEVVTR 362 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN------------------------- 409 R+ F ++ R IL+GL +A NIDEII I+ Sbjct: 363 RTMFELRKARERGHILEGLTVALANIDEIIETIKTSANPAEARERLLAGEWAGGGVVSLL 422 Query: 410 ---------------EDKPKPVMV--SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELD 452 ED +P + S + L+ QV AIL LRL L LE+ ++ +E Sbjct: 423 EKAGAISVRPDEIEGEDPNRPFGLTDSIYRLSPTQVGAILELRLHRLTGLEQDKLHAEYT 482 Query: 453 NLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ 512 +L + ++ ++LN +N + IRE + + G RRT E SR D + ++ Sbjct: 483 EILGQIAELTAILN----DFNLLMAVIREELALVLQQYGDG-RRTEIIE-SRIDFS--RE 534 Query: 513 AMIEKEPITVVISNRGWIRS--LKSHSVDL------SALHFKEGDSLKIALHAHTTDRIL 564 +I +E + + +S G+ ++ L + SA K+ D ++ + A +L Sbjct: 535 DLIPEEQVVLTVSQTGYAKTQPLSDYQAQRRGGRGKSATSMKDDDFIQHLIVASNHATVL 594 Query: 565 LLSTDGKAYTLPAGNL-LSGRG-HGEAIQLLIDLNHNQDIVTAFV----YDSTCKLLVVS 618 + GK Y L + + RG G I L+ L+ N+ VTA + + + + + Sbjct: 595 CFTNVGKVYRLRVFEVPQASRGAKGRPIVNLLPLDANE-TVTAILPLNEFPENHYVFMAT 653 Query: 619 SKGNAFIVEESEIIANTR-KGKTFLKVSSEEKMKLVVKVTGDHVAVVGENR-KLLIFSID 676 + G V + E AN R G ++++ E+ + V G+ ++ N K + F+ Sbjct: 654 ASGTVKRV-DLEQFANIRSNGLRAIELNEEDTLIGVAITDGNQQIMLFSNEGKAIRFAET 712 Query: 677 QIPEMSR-GKGVR 688 + M R KGVR Sbjct: 713 DVRAMGRTAKGVR 725 >gi|220932012|ref|YP_002508920.1| DNA gyrase subunit A [Halothermothrix orenii H 168] gi|219993322|gb|ACL69925.1| DNA gyrase subunit A [Halothermothrix orenii H 168] Length = 796 Score = 411 bits (1056), Expect = e-112, Method: Compositional matrix adjust. Identities = 231/606 (38%), Positives = 363/606 (59%), Gaps = 22/606 (3%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 E ++++++ +++ YL+Y+LS I RA+PD+RDG KPVHRRI++A E+GL KK Sbjct: 3 EKIRSIAIEDKMKDSYLSYSLSVIASRALPDVRDGLKPVHRRILYAARELGLTHDKPHKK 62 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 SARIVGEV+GK HPHGD SVYD++VR+AQ F QRY LI G GNFG+IDGDS AA RYTEA Sbjct: 63 SARIVGEVLGKYHPHGDASVYDAMVRMAQYFNQRYCLIDGHGNFGSIDGDSPAAMRYTEA 122 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 R+T++AE I+ + +D VDF D ++ EP + P+K PNLL NG SGIAVGM+TSIP H Sbjct: 123 RLTELAEDIMADITQDTVDFVDNFDGSLQEPEILPTKVPNLLINGASGIAVGMSTSIPPH 182 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 N+ E+ +A + L+ +P +E +++YI GPDFPTG IV I ++Y+ G G +RA Sbjct: 183 NLGEVVDAMVHLLKHPNAKLETIMKYIPGPDFPTGAKIV-GLSGIKKAYKTGNGKITLRA 241 Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVL 313 R +E+ GR I++ EIPY + K +L+E IAELI +I + D+RDES E +RIV+ Sbjct: 242 RTQIEKKGRKKQ-IIIKEIPYHLNKVKLLEDIAELINKGKIDNVSDLRDESDQEGLRIVV 300 Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373 K+ + DPD+++ ++ + ++T + +NM L G+ P+VM L ILK ++ RR+V+ Sbjct: 301 ELKSGA-DPDIILNQLYKFTSLQTNYRINMLALD-GKQPRVMDLITILKNFINFRRQVIT 358 Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVDA 430 RR+ +++ R +L+GL+ A +D +I+IIR+ K + + +TE Q +A Sbjct: 359 RRTKYKLNKAKERFHLLQGLITAIDKLDLVISIIRHSKSTKEARQKLQEKLVITEKQAEA 418 Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490 IL +RL+ L +EE ++ E L + + +LN+ + + E+ ++K ++ Sbjct: 419 ILRMRLQKLVGMEEEKLHQESAGLEEQIKYYKKILNNKNELDKVLKKELLDIKNKYA--- 475 Query: 491 DLGRRRTTFCEVSRADKATLQQA-MIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549 +R+T E +KA +++ +I+KE + + S R I+ S + + D Sbjct: 476 --DKRKTEIIE--DEEKAIIEKTDLIKKEKVFLTFSYRQNIKRTTSSEYARAG----KND 527 Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDIVTAFV 607 + + T D +L + G YTLP + G G+ I+ + + ++ IV Sbjct: 528 YIIDTMTGTTLDTLLFFTNTGDVYTLPVHKIPEHHGLSTGDNIKDFLKIPLSKKIVKVIC 587 Query: 608 YDSTCK 613 + K Sbjct: 588 LNEETK 593 >gi|284036916|ref|YP_003386846.1| DNA gyrase subunit alpha [Spirosoma linguale DSM 74] gi|283816209|gb|ADB38047.1| DNA gyrase, A subunit [Spirosoma linguale DSM 74] Length = 838 Score = 411 bits (1056), Expect = e-112, Method: Compositional matrix adjust. Identities = 244/694 (35%), Positives = 395/694 (56%), Gaps = 42/694 (6%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 N+ +++ + Y+ Y++S I RA+PD+RDG KPVHRR++ M+E+G+++ KKS Sbjct: 13 NIIPINIEDEMRGAYIDYSMSVIISRALPDVRDGLKPVHRRVLFGMAELGVNYNKPHKKS 72 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 ARIVGEV+GK HPHGD SVYD++VR+AQ + RYPL+ GQGNFG+IDGDS AA RYTEAR Sbjct: 73 ARIVGEVLGKYHPHGDSSVYDTMVRMAQDWSLRYPLVDGQGNFGSIDGDSPAAMRYTEAR 132 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 + ++A+ +L + ++ VDF+ +++ EP V P+K PNLL NG+SGIAVGMAT++ HN Sbjct: 133 LKRIADELLTDIYKETVDFQGNFDDSLQEPTVMPAKLPNLLLNGSSGIAVGMATNMAPHN 192 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 + E+ + LA ++N EI++E+L++++ PDFPTG I E + +++ GRG +RA Sbjct: 193 LTEVVDGILAYLENSEITVEELMQFVKAPDFPTGATIY-GMEGVKSAFKTGRGRVVMRAH 251 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315 +EE RG I+VT++PY V K+ ++EK AELI K+I + RDES D V++ Sbjct: 252 ATIEE-NRGKTQIIVTDVPYMVNKAVMLEKTAELINDKKIEGIMAFRDESDRDGLRVVYD 310 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 + P++++ +++ + +++ F +N L GR P ++ L ++K ++ HR EV+ RR Sbjct: 311 LRKDAIPNVVLNNLYKHTALQSSFSINNVALVKGR-PMMLNLKDMMKYYVEHRFEVITRR 369 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVDAIL 432 + + ++ ++R IL+GLLIA NID +I +IR+ P+ ++ RFSL++ Q AIL Sbjct: 370 TQYELREAEKRAHILEGLLIALDNIDAVIELIRSSRDPEVARTGLMERFSLSDLQAKAIL 429 Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492 +RL+ L LE ++++E D L+ E + +L S +++ I E+ +++ + Sbjct: 430 EMRLQRLTGLERDKLQAEYDELMTEIADLKEILASEERKRQVIKEELTDIRARYGDE--- 486 Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALH 544 RRT + + + L ++I E + + IS+ G+I RS V A Sbjct: 487 --RRTEINPLGDGNISDL--SLIADEDMVITISHEGYIKRTPTTEYRSQGRGGVGAKAAS 542 Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVT 604 KE D + A + +L + G+ Y LP L G + L +N D Sbjct: 543 TKEEDFTEHLFTATMHNTLLAFTQKGRMYWLPVYELPEGSRTSKGRPLANFINIESD--- 599 Query: 605 AFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG---KTFLKVSSEEKMKLVVKVTGDHV 661 D ++ V+ N + + I+ TRKG KT L+ S + ++ +T D Sbjct: 600 ----DKVRAVINVTDLKNEDYINNNYIVMCTRKGTIKKTMLEAYSRPRQNGIIAITID-- 653 Query: 662 AVVGENRKLLIFSI-----DQIPEMSRGKGVRLQ 690 E+ +LL + D + S GK VR Sbjct: 654 ----EDDQLLGVCMTNGDNDIVIASSAGKAVRFH 683 >gi|239500994|ref|ZP_04660304.1| DNA gyrase, A subunit [Acinetobacter baumannii AB900] gi|260556508|ref|ZP_05828726.1| DNA gyrase, A subunit [Acinetobacter baumannii ATCC 19606] gi|193078102|gb|ABO13043.2| DNA gyrase [Acinetobacter baumannii ATCC 17978] gi|260409767|gb|EEX03067.1| DNA gyrase, A subunit [Acinetobacter baumannii ATCC 19606] Length = 904 Score = 411 bits (1056), Expect = e-112, Method: Compositional matrix adjust. Identities = 268/734 (36%), Positives = 413/734 (56%), Gaps = 76/734 (10%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 ++ +++ L+ YL YA+S I RA+PD+RDG KPVHRR+++AM E+G D+ A+KKSA Sbjct: 6 IRPIAIEDELKHSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMHELGNDYNKAYKKSA 65 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD +VY+++VR+AQ F RY L+ GQGNFG+IDGDSAAA RYTE RM Sbjct: 66 RVVGDVIGKYHPHGDSAVYETIVRMAQDFSLRYLLVDGQGNFGSIDGDSAAAMRYTEVRM 125 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 T++A +L +++D VD+ D Y+ + P V P++ PNLL NG +GIAVGMAT++ HN+ Sbjct: 126 TKLAHELLADLEKDTVDWEDNYDGSERIPEVLPTRVPNLLINGAAGIAVGMATNMAPHNM 185 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ A LA DNP ISIE L+EYI GPDFPTGGII + IV++YR G+G +R ++ Sbjct: 186 TEVVNACLAYADNPNISIEGLMEYITGPDFPTGGIIY-GKSGIVDAYRTGKGRLHIRGKY 244 Query: 257 CVEEVGR-GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLF 314 EE + G IV TEIPYQV K+R+IE+IAEL+ K++ + ++RDES E +RI + Sbjct: 245 HFEEDEKTGRTTIVFTEIPYQVNKARVIERIAELVKEKKLEGISELRDESDKEGMRIAID 304 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K R + ++++ ++F+ + +E F +NM L G+ P++M L I+ ++ HR+EV+ R Sbjct: 305 LK-RGENAEVVVNNLFLNTQLENSFSINMVCLDNGQ-PKLMNLKDIIAAFIRHRQEVVTR 362 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN------------------------- 409 R+ F ++ R IL+GL +A NIDEII I+ Sbjct: 363 RTMFELRKARERGHILEGLTVALANIDEIIETIKTSANPAEARERLLAGEWAGGGVVALL 422 Query: 410 ---------------EDKPKPVMVSR--FSLTENQVDAILNLRLRSLRKLEEYQIKSELD 452 ED +P +S + L+ QV AIL LRL L LE+ ++ +E Sbjct: 423 EKAGAISVRPDEIEGEDPNRPFGLSDSIYRLSPTQVGAILELRLHRLTGLEQDKLHAEYT 482 Query: 453 NLLAEKEKIDSLLNSGKQQWNQIACEIR-EVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511 +L + ++ ++LN +N + IR E+ ++ + D RRT E SR D + Sbjct: 483 EILGQIAELTAILND----FNLLMGVIREELAQVLQQYGDA--RRTEIVE-SRVD--FCR 533 Query: 512 QAMIEKEPITVVISNRGWIRS--LKSHSVDL------SALHFKEGDSLKIALHAHTTDRI 563 + +I +E + + +S G+ ++ L + SA K+ D ++ + A + Sbjct: 534 EDLIPEEQVVLTVSQTGYAKTQPLSDYQAQRRGGRGKSATSMKDDDFIQHLIVASNHATV 593 Query: 564 LLLSTDGKAYTLPAGNL-LSGRG-HGEAIQLLIDLNHNQDIVTAFV----YDSTCKLLVV 617 L + GK Y L + + RG G I L+ L+ + VTA + + + + Sbjct: 594 LCFTNVGKVYRLKVFEVPQASRGAKGRPIVNLLPLDATE-TVTAILPLTEFPENHYVFMA 652 Query: 618 SSKGNAFIVEESEIIANTR-KGKTFLKVSSEEKMKLVVKVTGDHVAVVGENR-KLLIFSI 675 ++ G V E E AN R G ++++ E+ + V G+ ++ N K + F+ Sbjct: 653 TASGTVKRV-ELEQFANIRSNGLRAIELNEEDTLIGVAITDGNQQIMLFSNEGKAIRFAE 711 Query: 676 DQIPEMSR-GKGVR 688 + M R KGVR Sbjct: 712 TDVRAMGRTAKGVR 725 >gi|125718041|ref|YP_001035174.1| DNA gyrase subunit A [Streptococcus sanguinis SK36] gi|125497958|gb|ABN44624.1| DNA gyrase A subunit, putative [Streptococcus sanguinis SK36] Length = 826 Score = 411 bits (1056), Expect = e-112, Method: Compositional matrix adjust. Identities = 236/615 (38%), Positives = 370/615 (60%), Gaps = 40/615 (6%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 + N+ V+L ++ ++ YA+S I RA+PD+RDG KPVHRRI++ M+E+G+ K Sbjct: 10 DRNLVNVNLTNEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPEKPHK 69 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSARI G+V+GK HPHGD S+Y+++VR+AQ + RY L+ G GNFG++DGD AAA RYTE Sbjct: 70 KSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYTE 129 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 ARM+++A +L+ ++++ VD+ D Y+ + EPVV P++FPNLL NG +GIAVGMAT+IP Sbjct: 130 ARMSKIALEMLRDINKNTVDYIDNYDASEREPVVLPARFPNLLVNGATGIAVGMATNIPP 189 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E +A ++DNP+ + ++E + GPDFPTG +++ + I +Y G+G +R Sbjct: 190 HNLGESIDAVKLVMDNPDATTRDIMEVLPGPDFPTGALVM-GKSGIHRAYETGKGSIVLR 248 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312 +R +EE+ G IVVTE PY V K+++ E I L+ KRI + +RDES E VR V Sbjct: 249 SRTEIEEMKNGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVRFV 308 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 + + R +++ ++F L+ M+T F NM + G VP+++ L IL ++ H++EV+ Sbjct: 309 IEVR-RDASAHVILNNLFKLTQMQTNFSFNMLAIQNG-VPKILSLREILLAYIEHQKEVV 366 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVD 429 RR+ F + + R IL GLLIA +IDE+I IIRN + + + ++++F L+E Q Sbjct: 367 TRRTVFDKEKAEARAHILAGLLIALDHIDEVIRIIRNSETDAEAQAELMAKFELSERQSQ 426 Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489 AIL++RLR L LE +I+SE D L+A + +L ++ I E+ EVK F+ Sbjct: 427 AILDMRLRRLTGLERDKIQSEYDELIALIADLADILAKPERVIAIIKEELDEVKRKFADD 486 Query: 490 TDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSL--------KSHSVDL 540 RRT E+ + +L+ + +IE+ + + +SN+G+I+ L K + Sbjct: 487 -----RRT---ELMVGEVLSLEDEDLIEEADVLITLSNKGYIKRLNQAEFTAQKRGGRGV 538 Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLLSGRG 585 K+ D +K + T DR+L + G+ Y LPA NLL Sbjct: 539 QGTGVKDDDFVKELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYGRTAKGLPAVNLLK-LD 597 Query: 586 HGEAIQLLIDLNHNQ 600 GE IQ +I++ ++ Sbjct: 598 EGETIQTIINVQQDR 612 >gi|260888797|ref|ZP_05900060.1| DNA gyrase, A subunit [Selenomonas sputigena ATCC 35185] gi|330839812|ref|YP_004414392.1| DNA gyrase, A subunit [Selenomonas sputigena ATCC 35185] gi|260861433|gb|EEX75933.1| DNA gyrase, A subunit [Selenomonas sputigena ATCC 35185] gi|329747576|gb|AEC00933.1| DNA gyrase, A subunit [Selenomonas sputigena ATCC 35185] Length = 809 Score = 411 bits (1056), Expect = e-112, Method: Compositional matrix adjust. Identities = 255/703 (36%), Positives = 397/703 (56%), Gaps = 30/703 (4%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 E + V+L ++ Y+ YA+S I RA+PD+RDG KPVHRRI++AM E G+ G +K Sbjct: 5 EGKIVPVNLASEMKNSYIDYAMSVIVARALPDVRDGLKPVHRRILYAMQEAGMGSGKPYK 64 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSARIVGEV+GK HPHGD SVYD++VR+AQ F RY L G GNFG++DGD AAA RYTE Sbjct: 65 KSARIVGEVLGKYHPHGDSSVYDAIVRMAQDFSMRYMLADGHGNFGSVDGDPAAAMRYTE 124 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 RM++VAEL+LQ +D++ VDF Y+E EP V P+KFP LLANGT+GIAVGMAT+IP Sbjct: 125 VRMSKVAELMLQDIDKETVDFAPNYDESLKEPTVLPAKFPQLLANGTAGIAVGMATNIPP 184 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN++E+ + L LID P+ ++E+L+ I GPDFPT G+I+ + E I ++Y GRG ++R Sbjct: 185 HNMREVIDGTLMLIDRPDATVEELMTVIKGPDFPTAGLILGT-EGIRQAYTTGRGVIKLR 243 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313 AR +E G I+VTE+PYQV K+RL+EKIAEL+ K I + + DES ++ Sbjct: 244 ARVHIETTSSGRSRIIVTELPYQVNKARLVEKIAELVRDKAIEGITALNDESDRSGMRIV 303 Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373 R + ++++ ++ + ++ F + M L G P+V+ L +L ++ H+++V+ Sbjct: 304 IDVRRDANANVILNQLYKHTQLQDSFGVIMLALVDGS-PRVLTLKEVLHYYIKHQQDVIT 362 Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAII---RNEDKPKPVMVSRFSLTENQVDA 430 RR+ + + + R IL+GL IA ++D +I I R D + ++ F L+E Q A Sbjct: 363 RRTKYELAKAEARAHILEGLTIALDHLDAVITTIRESRTADIARERLMEDFKLSEKQAQA 422 Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490 IL+LRL+ L LE +I+ E +L + + S+L + I E+ V+E + Sbjct: 423 ILDLRLQRLTGLEREKIEEEYQEVLKMIDWLKSVLADEGKIDKIIKDELLAVREKYGDE- 481 Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSVDLSA 542 RRT E++ + +I +E + + +++ +I+ + K V ++ Sbjct: 482 ----RRT---EITIDTSEINVEDLIAQEDVVITLTHNNYIKRMPLDTYRRQKRGGVGVTG 534 Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAG--NLLSGRGHGEAIQLLIDLNHNQ 600 + KE D ++ L T IL + G+ Y L A N S + G AI L+ L + Sbjct: 535 MGTKEADFVENILVTTTHHTILFFTNRGRVYCLKAYEINEASRQAKGTAIINLLQLESEE 594 Query: 601 DIVTAFV----YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV 656 I TA + + L + + KG SE + R G + + ++ + V Sbjct: 595 KI-TAVIQVKEFLPERYLFMATKKGIVKKTSLSEFQSIRRGGLNAINLDEDDDLIGVKFT 653 Query: 657 TGDHVAVVGENRKLLI-FSIDQIPEMSR-GKGVRLQSYKDGGI 697 G+ ++G + + F+ D + M R +GV+ + K G + Sbjct: 654 DGEKHVILGTAGGMAVAFAEDDVRSMGRTARGVKGINLKAGDV 696 >gi|31544927|ref|NP_853505.1| DNA gyrase subunit A [Mycoplasma gallisepticum str. R(low)] gi|33860161|sp|P47719|GYRA_MYCGA RecName: Full=DNA gyrase subunit A gi|31541774|gb|AAP57073.1| DNA gyrase subunit A [Mycoplasma gallisepticum str. R(low)] gi|284931005|gb|ADC30944.1| DNA gyrase subunit A [Mycoplasma gallisepticum str. R(high)] Length = 846 Score = 411 bits (1056), Expect = e-112, Method: Compositional matrix adjust. Identities = 262/775 (33%), Positives = 425/775 (54%), Gaps = 68/775 (8%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 VK S+ LE ++ YA+S I RA+P+ RDG KPVHRR+++ GL ++KSA Sbjct: 18 VKEASITKELETSFMEYAMSVIVSRALPESRDGLKPVHRRVLYGAYTSGLTHDKPYRKSA 77 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 +IVG V+GK HPH D ++Y+++VR+AQPF RY LI G GNFG+IDGDSAAA RYTEAR+ Sbjct: 78 QIVGHVMGKYHPHSDSAIYETMVRMAQPFSLRYMLIDGHGNFGSIDGDSAAAMRYTEARL 137 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 ++++ +L+ +D+D VDF D Y+ + EP+V PS FPNLLANG+SGIAVGMAT+IP HN+ Sbjct: 138 SKISAEMLRNIDKDTVDFVDNYDASEQEPIVLPSLFPNLLANGSSGIAVGMATNIPPHNL 197 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ L+ N +IE+L E+I GPDFPT I+ I E + GRG VRA+ Sbjct: 198 SELIGGIKHLLVNENATIEELKEFIKGPDFPTAAEIL-GETGINEYFNTGRGSVSVRAKS 256 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLFP 315 +EE+ IV+T+IPY V K+ LI KIAEL+ ++I + D+RDES E +RIV+ Sbjct: 257 EIEELANNKSNIVITQIPYMVNKANLINKIAELVKTEQIQGIADLRDESNREGIRIVIET 316 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 K R + P++L+ ++ + ++T F + M L + P+V+ L L+ ++ H+ ++L R+ Sbjct: 317 K-RDVIPEVLLNQLYKSTQLQTNFSVAMLAL-VNNQPKVLNLKEALQIYIDHQFDILLRK 374 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLTENQVDAIL 432 ++F ++ I++GL+IA NID++I I+N + K +++++ L++ Q AIL Sbjct: 375 TNFELKKAKASAHIVEGLVIATNNIDDVIETIKNAKDNEDAKNTLMTKYELSDLQAKAIL 434 Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492 ++RLRSL LE ++ EL L + ++ +L + +++ I+ ++ E+ F Sbjct: 435 DMRLRSLSGLERENLQKELAKLKELIKDLEEILQNKERRIKIISDQLDEIDHKFGD---- 490 Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHS--------VDLSALH 544 RRT C + + +I E + + S++G+++ + + V + ++ Sbjct: 491 -ERRTKIC--YGLNSTIDNEQLIPVETVVITRSSKGYLKRIPISAYKVQHRGGVGVKGMN 547 Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLLSGRGHGEA 589 E D ++ + T +L + GK Y +PA NL+S E Sbjct: 548 TYEDDDVESLIVCSTHSDLLFFTNYGKVYRIRAHQVPLGSRISKGIPAINLISIE-KDEK 606 Query: 590 IQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649 + L+ +N D + + + ST K LV K + F S I N GK +K++ + Sbjct: 607 LMSLLSIN---DYDSGYFFFSTKKGLVKRVKASEF----SRIQNN---GKIAIKLTENDS 656 Query: 650 MKLVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSRGK----GVRLQSYKDG--GISD--- 699 + V+K GD +G + LL+ F D + M R GV+ ++ D G+S Sbjct: 657 LFKVIKTAGDEEIYIGVSSGLLVRFKEDVVRSMGRTAQGVIGVKFKNPNDEVIGLSSSHE 716 Query: 700 -VICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753 + +CE G+ +R E + RG G + K P++G +++ Sbjct: 717 GSLLLAVCE-----KGVGKMTDREEY----RMTNRGSKGVITIKVTPKTGNIINT 762 >gi|11498076|ref|NP_069301.1| DNA gyrase, subunit A (gyrA) [Archaeoglobus fulgidus DSM 4304] gi|2650163|gb|AAB90772.1| DNA gyrase, subunit A (gyrA) [Archaeoglobus fulgidus DSM 4304] Length = 786 Score = 411 bits (1056), Expect = e-112, Method: Compositional matrix adjust. Identities = 270/751 (35%), Positives = 436/751 (58%), Gaps = 50/751 (6%) Query: 26 LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85 L+ Y+ YA+S I RA+PD+RDG KPV RRI++AM EMGL ++KSARIVGEV+GK Sbjct: 11 LKSSYIDYAMSVIVGRALPDVRDGLKPVQRRILYAMYEMGLFSNRPYRKSARIVGEVLGK 70 Query: 86 LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145 HPHGD +VYD+LVR+AQ FV RYPL+ GQGNFG+IDGDS AA RYTEAR+T++AE +L Sbjct: 71 YHPHGDSAVYDALVRMAQDFVMRYPLVDGQGNFGSIDGDSPAAMRYTEARLTKIAEEMLA 130 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 + ++ VDF ++ EPVV PSK PNLL NG+SGIAVGMAT++P HN+ E+CE +A Sbjct: 131 DIGKNTVDFMPNFDATLKEPVVLPSKIPNLLINGSSGIAVGMATNMPPHNLAEVCEGIIA 190 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265 I NPEIS+E+L++Y+ GPDFPTGG+IV + I E+Y GRG VR + VE+ Sbjct: 191 YIQNPEISVEELMKYVKGPDFPTGGVIV-GVDGIKEAYLTGRGKITVRGKVEVEK----- 244 Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFPKNRSLDPDL 324 I++ E+PY V K++L+E IAEL RI + IRDES E +R+V+ K+ S +P+ Sbjct: 245 NAIIIREVPYMVNKAKLVESIAEL-AKDRIDEIRTIRDESDREGIRVVIELKSGS-NPET 302 Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384 +++ ++ S+++T F + +N+ + P+++ L ++ ++ HRRE++ RR+++ ++ Sbjct: 303 VIKKLYAYSNLQTTFGI-INLALVDNEPRILNLKELIALFVDHRREIIRRRTTYDLEKAQ 361 Query: 385 RRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVDAILNLRLRSLRK 441 R+ I++GL + +ID I +I++ P K ++ +SL+E Q DA+L +RL+ L Sbjct: 362 ERLHIVEGLKVVVEDIDNAINLIKSSSSPSEAKGKLIETYSLSEKQADAVLQMRLQKLTA 421 Query: 442 LEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC- 500 +E + E ++L + + +S+L S ++ IA E+RE++E + RRT Sbjct: 422 MEIDALLKEYESLKEKIAEYESILASPEKIDAIIADEVREIREKYGDE-----RRTEIIG 476 Query: 501 ---EVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSVDLSALHFKEGD 549 E+S D +IE+E V+I+ G+ + + V + GD Sbjct: 477 QVDEISTTD-------LIEEEENAVLITAEGYAKRMSLEEFRVQSRGGVGVIGASVSPGD 529 Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAF- 606 + + ++TDR+L+ + G+A+ + A + + G ++ LI L + + +V+A Sbjct: 530 EIAVFRICNSTDRLLIFTNTGRAFWINAYEIPKMDRTARGTTLKRLIRLENGEKVVSALG 589 Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGE 666 V D K+ V+ S +++ +I + +K S+ E ++ V + GD + + Sbjct: 590 VKDFNGKIAVILSPDG--YIKKVPLIEFENAKRAGVKASAGE-IQQVELLEGDSIFIATA 646 Query: 667 NRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYN-RSEN 724 N ++ +PE R KGV +DG + EG + R Y R + Sbjct: 647 NGNVVRLRETDVPEYGRNAKGVIAVRLRDG--DRIAWMSASEGEYLLMLTERGYGKRCDV 704 Query: 725 DLLGWLGKRGGVGSLVPKGFPRSGK--FLSS 753 + ++G RG +G + + ++GK F+S+ Sbjct: 705 NEFRFIG-RGSMGMIGYRISEKTGKLAFISA 734 >gi|251771683|gb|EES52258.1| DNA gyrase, A subunit [Leptospirillum ferrodiazotrophum] Length = 854 Score = 411 bits (1056), Expect = e-112, Method: Compositional matrix adjust. Identities = 288/767 (37%), Positives = 417/767 (54%), Gaps = 58/767 (7%) Query: 19 AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78 VS+ + YL Y++S I RA+PD RDG KPV RR++ AM EMG+ G A++KSARI Sbjct: 14 TVSIDEEIRTAYLNYSMSVIVGRALPDARDGLKPVQRRVLFAMHEMGVRPGTAYRKSARI 73 Query: 79 VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138 VG+VIGK HPHGD +VYD+ VRL QPF RYPLI GQGNFG++DGD+ AA RYTE R+T+ Sbjct: 74 VGDVIGKYHPHGDTAVYDTAVRLVQPFTLRYPLIDGQGNFGSVDGDAPAAMRYTEIRLTR 133 Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198 +AE ++ +DE+ VD+ Y+E EP V P+ P LL NG+SGIAVGMAT+IP HN+ E Sbjct: 134 LAEEMMAELDEETVDWSPNYDESLEEPRVLPASLPLLLLNGSSGIAVGMATNIPPHNITE 193 Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258 + A L L+DNPE + L+ ++ GPDFPTGG+I+ R I +YR GRG +R V Sbjct: 194 VLNALLHLMDNPEATDSDLMTFVTGPDFPTGGVIL-GRSGIESAYRTGRGSIVMRGVVEV 252 Query: 259 EEVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPK 316 E+ R C+V+ EIPY V K+RLIEKIAEL+ K+I + DIRDES D +RIV+ K Sbjct: 253 EDSTRSDRQCLVIREIPYLVNKARLIEKIAELVREKKIEHIADIRDESDRDGMRIVVELK 312 Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376 ++ P ++M +F+L+ +++ F N + GR P+ + L L+ +L R++V+ RR+ Sbjct: 313 REAI-PRIIMNQLFLLTPLQSSFGYNAVSIVNGR-PETLSLSQTLRVFLGFRKDVVTRRT 370 Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVDAILN 433 FR++ R IL+GL A IDEIIA+IR P+ +VS F+ +E Q AIL+ Sbjct: 371 LFRLRKARERFHILEGLRRAIDLIDEIIALIRRSGSPEEARNGLVSTFAFSELQAQAILD 430 Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493 LRL+ L LE +I++E + A ++++L S + I E R + E F Sbjct: 431 LRLQRLTGLEREKIEAEYREVAALIASLEAILASREALLEVIRQETRVLLERFGDG---- 486 Query: 494 RRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSLKSHSVDLS--------ALH 544 RRT D+ L +A+I EP V +S G+I+ + + + Sbjct: 487 -RRTVIV----PDEGELTPEALIPDEPYIVTLSYEGYIKRMPDAVLPTQRRGGKGRIGVT 541 Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL----LSGRG-HGEAIQLLIDLNHN 599 KE D L L+A D +L + GK Y L L + RG H ++ L Sbjct: 542 LKEDDCLIATLNARAHDTLLFFTDLGKVYRLKTYELPEAQRTARGKHLLSLLSLSPDERV 601 Query: 600 QDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD 659 I+ ++ LL + KG SE AN R+G V E GD Sbjct: 602 AAILPVRSFEGDNLLLFGTVKGYFKKTRLSE-YANIRQGGLIATVLEE----------GD 650 Query: 660 HVA---VVGENRKLLI---------FSIDQIPEMSRG-KGVRLQSYKDGGISDVICF-KI 705 +A V+ +R+LL+ F D I R +GVR + + V+ F ++ Sbjct: 651 RLARVLVLHPDRRLLVATRGGMSIRFEADNIRPTGRATRGVR--AIRLSPDDSVVSFEEV 708 Query: 706 CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752 + + + + + + + L L KRGG G + K P +G ++ Sbjct: 709 SDSDLLLVTTEKGFGKRVDTNLFRLQKRGGKGVRIAKVTPETGAVVA 755 >gi|254461178|ref|ZP_05074594.1| DNA gyrase, A subunit [Rhodobacterales bacterium HTCC2083] gi|206677767|gb|EDZ42254.1| DNA gyrase, A subunit [Rhodobacteraceae bacterium HTCC2083] Length = 920 Score = 411 bits (1056), Expect = e-112, Method: Compositional matrix adjust. Identities = 248/684 (36%), Positives = 383/684 (55%), Gaps = 57/684 (8%) Query: 19 AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78 ++S+ ++ YL YA+S I RAIPDLRDG KPVHRRI++AM E G +++KSAR Sbjct: 25 SISITQEMKTSYLDYAMSVIVSRAIPDLRDGLKPVHRRILYAMHEAGNTHEKSYRKSARA 84 Query: 79 VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138 VG+V+GK HPHGD ++YD+LVR+AQ F PL+ GQGNFG++DGD+AAA RYTE RM + Sbjct: 85 VGDVMGKYHPHGDSAIYDALVRMAQDFSMSLPLLDGQGNFGSMDGDNAAAMRYTEVRMDK 144 Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198 A +L +D++ VDF+D Y+ +D EP V P+++PN+L NG GIAVGMAT+IP HN+ E Sbjct: 145 PAAFLLSDIDKETVDFQDNYDGKDREPTVLPARYPNMLVNGAGGIAVGMATNIPPHNLGE 204 Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258 + A LALI+NP+++ E+L+ Y+ GPDFPTGGI++ R ++Y GRG +R++ V Sbjct: 205 VVTATLALIENPDLTTEELIAYVPGPDFPTGGIML-GRSGARKAYLEGRGSVVIRSKTRV 263 Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKN 317 EE+ + + IV+ EIPYQV KS +IEKIAE + K+I + ++DES + VR+V+ K Sbjct: 264 EEIRKDRYAIVIDEIPYQVNKSTMIEKIAEQVREKKIEGVAHVQDESDRNGVRVVVELK- 322 Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377 R P++++ +F + M+T F NM L+ GR P+ + L L ++ R +V+ RR++ Sbjct: 323 RDATPEVVLNQLFRFTSMQTYFGCNMLALNGGR-PETLTLRRFLTSFIDFREDVVARRTA 381 Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE--------------------------- 410 + ++ R IL GL +A N+DE++A IR+ Sbjct: 382 YELRKARERSHILCGLAVAVTNVDEVVATIRSSADAAEAREKLKTRRWPAIEIAEYINLI 441 Query: 411 DKPKPVMV--SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSG 468 D P M ++L+E Q AIL LRL+ L ++ ++ EL L + + +L S Sbjct: 442 DDPTHKMNDDGTYNLSETQARAILELRLQRLTQIGVKEVTDELKLLAGKIREYLEILGSR 501 Query: 469 KQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRG 528 + I E+ EV+E F+ RRT + S + +IE+E + V I++ G Sbjct: 502 DRIMAIIRDELSEVREKFAVP-----RRTEIVDWS---GDMEDEDLIEREDMVVTITSGG 553 Query: 529 WI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL 580 +I R+ + ++ + K+ D + A+T ++L +TDG +Y L L Sbjct: 554 YIKRTPLIDFRAQRRGGKGVAGMQTKDEDVITTLFVANTHTQLLFFTTDGMSYKLKTWRL 613 Query: 581 -LSGR-GHGEAIQLLIDLNHNQDIVTAFVYDSTCK------LLVVSSKGNAFIVEESEII 632 L GR G+AI ++ + I D K ++ +S G + S+ Sbjct: 614 PLGGRTAKGKAIVNILPIPTGVSIAAIMPVDRDEKDWDDLQVVFATSAGTVRRNKLSDFT 673 Query: 633 ANTRKGKTFLKVSSEEKMKLVVKV 656 R GK +K E + ++ V Sbjct: 674 NVMRNGKIAMKFEGEHEGTTLIDV 697 >gi|255262702|ref|ZP_05342044.1| DNA gyrase, A subunit [Thalassiobium sp. R2A62] gi|255105037|gb|EET47711.1| DNA gyrase, A subunit [Thalassiobium sp. R2A62] Length = 923 Score = 411 bits (1056), Expect = e-112, Method: Compositional matrix adjust. Identities = 237/602 (39%), Positives = 353/602 (58%), Gaps = 49/602 (8%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 +S+ ++ YL YA+S I RAIPDLRDG KPVHRRI++AM E G +++KSAR V Sbjct: 24 ISITDEMKTSYLDYAMSVIVSRAIPDLRDGLKPVHRRILYAMYETGNSHDKSYRKSARPV 83 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+V+GK HPHGD ++YD+LVR+AQ F PL+ GQGNFG++DGD+AAA RYTE RM + Sbjct: 84 GDVMGKYHPHGDGAIYDALVRMAQDFSMSLPLLDGQGNFGSMDGDNAAAMRYTEVRMDKP 143 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A +L +++D VDF+D Y+ +D EP V PS+FPN+L NG GIAVGMAT+IP HN+ E+ Sbjct: 144 AAFVLADIEKDTVDFQDNYDGKDREPTVLPSRFPNMLVNGAGGIAVGMATNIPPHNLGEV 203 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 +A LALID+P++S E L+EY+ GPDFPTGGI++ R ++Y GRG VRA+ VE Sbjct: 204 VDATLALIDDPDLSSEDLIEYVPGPDFPTGGIML-GRSGARKAYLEGRGSVIVRAKTRVE 262 Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKNR 318 E+ + + I++ EIPYQV K+ +IEKIAE + K+I + ++DES + VR+V+ K R Sbjct: 263 EIRKDRFAIILDEIPYQVNKATMIEKIAEQVREKKIEGISHVQDESDRNGVRVVVELK-R 321 Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378 ++++ +F + M+T F NM L+ GR P+ + L L ++ R EV+ RR++F Sbjct: 322 DATAEVVLNQLFRFTPMQTYFGCNMLALNGGR-PEQLTLRRFLTSFVDFREEVVARRTAF 380 Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE----DKPKPVMVSR-------------- 420 ++ R IL GL +A NIDEI+A IR+ + + +M R Sbjct: 381 ELRKARERSHILCGLAVAVTNIDEIVATIRSSADAAEAREKLMTRRWPAESILEYIELID 440 Query: 421 -----------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGK 469 ++L+E Q AIL LRL+ L ++ ++ EL L + +L S + Sbjct: 441 DPTHTANDDGTYNLSETQARAILELRLQRLTQIGVKEVTDELQELAGKIRDYLEILGSRE 500 Query: 470 QQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW 529 + I E+ EV++ F+ RRT + S + +IE+E + V +++ G+ Sbjct: 501 RIMQIIRDELHEVRDQFAVP-----RRTAIVDWS---GDMDDEDLIEREDMVVTVTSGGY 552 Query: 530 I--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL 581 I R+ + + + KE D + A+T ++L +TDG AY L L Sbjct: 553 IKRTPLADFRAQRRGGKGVGGMQTKEEDVVTTLFVANTHTQLLFFTTDGMAYKLKTWRLP 612 Query: 582 SG 583 G Sbjct: 613 QG 614 >gi|302336535|ref|YP_003801742.1| DNA gyrase subunit A [Olsenella uli DSM 7084] gi|301320375|gb|ADK68862.1| DNA gyrase subunit A [Olsenella uli DSM 7084] Length = 929 Score = 411 bits (1056), Expect = e-112, Method: Compositional matrix adjust. Identities = 249/688 (36%), Positives = 397/688 (57%), Gaps = 30/688 (4%) Query: 26 LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85 +E+ ++ Y++S I RA+PD+RDG KPVHRRI++AM+E G+ KKSA VGEVIGK Sbjct: 92 MEQSFIEYSMSVITARALPDVRDGLKPVHRRILYAMNEAGIFPNKPHKKSAWTVGEVIGK 151 Query: 86 LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145 HPHGD +VYD++VRLAQ F R PL+ G GNFGNIDGDSAAA RYTE+R+ + A +L+ Sbjct: 152 YHPHGDSAVYDAMVRLAQWFSMRTPLVDGHGNFGNIDGDSAAAMRYTESRLARPAMELLR 211 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 +++D +D++ Y+E EPVV P++FPNLL NG+ GIAVGMAT+IP HN++E A Sbjct: 212 DLNKDTIDWQSNYDESLQEPVVLPARFPNLLVNGSQGIAVGMATNIPPHNLKETIAAVCM 271 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265 LIDNP+ +++ L+ + GPDFPTG +I+ S E I ++Y GRG +RA+ VE G Sbjct: 272 LIDNPDATVDDLMTVMPGPDFPTGAVIMGS-EGIRQAYETGRGIITIRAKAHVESTKTGR 330 Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLFPKNRSLDPDL 324 +V TE PY V K L EKIA+L+ KR+ + D+RDES + +R+V+ K ++ P++ Sbjct: 331 NKLVFTEFPYGVNKGTLQEKIAQLVNEKRVEGISDMRDESNRKGLRLVIELKQGAI-PEV 389 Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384 ++ +++ S +++ F + +++ + VP+ + L +L+ ++ H+ +V+ RR+ F + Sbjct: 390 VLNNLYKYSALQSSFGI-IDLALVNGVPRTLTLREMLQHYIDHQVDVVTRRTRFDLAKAR 448 Query: 385 RRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLTENQVDAILNLRLRSLRK 441 R IL+GLL+A +IDE+I+IIR+ + + ++ RF T+ Q AIL +RLR L Sbjct: 449 ARAHILEGLLLALDHIDEVISIIRSSRTDTQASERLIERFGFTKQQTTAILEMRLRRLTG 508 Query: 442 LEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCE 501 LE +I+ ELD L E + LL ++ I E+ E+ E + +RRTT Sbjct: 509 LERDKIQEELDGLRRAIEYYEDLLADSRKILEVIKSEMSEIGEKYGD-----KRRTT--- 560 Query: 502 VSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKI 553 +S A + +I +E + V +++ G++ RS K + L K+ D ++ Sbjct: 561 ISDAPVVLDVEDLIAEEDMVVTVTHAGYVKRLPVATYRSQKRGGKGVQGLSLKDNDFVED 620 Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLN---HNQDIVTAFVY 608 A T D ++ + GK Y + L G H G A+ ++ L H ++T + Sbjct: 621 LFVASTHDYVMFFTNRGKVYRVKVHELPIGSRHARGSALVNVLPLGEGEHPTAVITTREF 680 Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT-GDHVAVVGEN 667 + L+ ++ G S+ + R G + + ++++ V +V G V + E Sbjct: 681 PADEYLMFATANGMVKKTAMSDYDKSRRDGIIAINLKRDDELVNVRRVKPGQKVILCSEV 740 Query: 668 RKLLIFSIDQI-PEMSRGKGVRLQSYKD 694 K ++F ++ P GVR + KD Sbjct: 741 GKAILFDESEVRPTGRDTSGVRGITLKD 768 >gi|283956423|ref|ZP_06373903.1| DNA gyrase subunit A [Campylobacter jejuni subsp. jejuni 1336] gi|283792143|gb|EFC30932.1| DNA gyrase subunit A [Campylobacter jejuni subsp. jejuni 1336] Length = 863 Score = 411 bits (1056), Expect = e-112, Method: Compositional matrix adjust. Identities = 238/607 (39%), Positives = 377/607 (62%), Gaps = 32/607 (5%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 + +++ V + +++ YL Y++S I RA+PD RDG KPVHRRI++AM F Sbjct: 8 DSDIELVDIENSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFV 67 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSARIVG VIG+ HPHGD +VYD+LVR+AQ F RYP I+GQGNFG+IDGDSAAA RYTE Sbjct: 68 KSARIVGAVIGRYHPHGDTAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTE 127 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 A+M++++ +L+ +D+D VDF Y+ +SEP V PS+ PNLL NG+SGIAVGMAT+IP Sbjct: 128 AKMSKLSHELLKDIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPP 187 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 H++ E+ + L L+DN + S+E+++++I GPDFPTGGII ++ I+E+YR GRG +VR Sbjct: 188 HSLNELIDGLLYLLDNKDASLEEIMQFIKGPDFPTGGIIY-GKKGIIEAYRTGRGRVKVR 246 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIV 312 A+ +E+ IV+ E+PYQ K+RLIE+IAEL+ K+I + ++RDES E +R+V Sbjct: 247 AKTHIEK-KTNKDVIVIDELPYQTNKARLIEQIAELVKEKQIEGISEVRDESNKEGIRVV 305 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 + K ++ ++++ ++F + ME+ F + M + + P++ L +L +L HR+ V+ Sbjct: 306 IELKREAM-SEIVLNNLFKSTTMESTFGVIMLAIH-NKEPKIFSLLELLNLFLTHRKTVI 363 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLTENQVD 429 RR+ F +Q R IL+GL IA NIDE+IA+I+N + + +V++F L+E Q + Sbjct: 364 IRRTIFELQKARARAHILEGLKIALDNIDEVIALIKNSSDNNTARDSLVAKFGLSELQAN 423 Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489 AIL+++L L LE +I++EL L+ E +++ +L S N I E++E++ F Sbjct: 424 AILDMKLGRLTGLEREKIENELAELMKEIARLEEILKSETLLENLIRDELKEIRSKF--- 480 Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS-------- 541 D+ R ++ + +I E + V I++RG+I+ + S + Sbjct: 481 -DVPR----ITQIEDDYDDIDIEDLIPNENMVVTITHRGYIKRVPSKQYEKQKRGGKGKL 535 Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDL 596 A+ + D ++ A+T D ++ ++ G K Y +P G S G+A+ LI+L Sbjct: 536 AVTTYDDDFIESFFTANTHDTLMFVTDRGQLYWLKVYKIPEG---SRTAKGKAVVNLINL 592 Query: 597 NHNQDIV 603 + I+ Sbjct: 593 QAEEKIM 599 >gi|302390805|ref|YP_003826625.1| DNA gyrase subunit A [Acetohalobium arabaticum DSM 5501] gi|302202882|gb|ADL11560.1| DNA gyrase subunit A [Acetohalobium arabaticum DSM 5501] Length = 811 Score = 411 bits (1056), Expect = e-112, Method: Compositional matrix adjust. Identities = 257/720 (35%), Positives = 406/720 (56%), Gaps = 51/720 (7%) Query: 12 LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71 L ++ +V++ ++E Y+ YA+S I RA+PD+RDG KPVHRRI++AM ++G+ + Sbjct: 4 LKKQEATSVNIENEMKESYMDYAMSVIAGRALPDVRDGLKPVHRRILYAMHQLGITPNKS 63 Query: 72 FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131 KKSARIVGEV+GK HPHGD +VYD++VR+AQ F RY L+ G GNFG++DGDSAAA RY Sbjct: 64 HKKSARIVGEVLGKYHPHGDTAVYDTMVRMAQNFSYRYMLVDGHGNFGSVDGDSAAAMRY 123 Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191 TEARM++++ +L +++D VDF+ +++ EP V PS+ PNLL NG+SGIAVGM+T+I Sbjct: 124 TEARMSKLSTELLSDINKDTVDFKPNFDDTLKEPEVLPSRLPNLLINGSSGIAVGMSTNI 183 Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251 P HN+ E+ + +A+IDNP++ I +L++ I GPDFPTGG+I+ R+ I +++ G+G + Sbjct: 184 PPHNLTEVIDGLIAMIDNPDLDIIELMKIIKGPDFPTGGLIM-GRKGIKKAFETGKGKVK 242 Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311 VRA+ +EE G I+V E+PYQV K++L+EK A L+ + + D+RDES + Sbjct: 243 VRAKTEIEEFGNNRERIIVNELPYQVNKAKLVEKTANLVRDGEVEGIADLRDESDRNGMR 302 Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371 + +S +P +++ +F + ++ F + M L G P+V+ L +L+ +L H++EV Sbjct: 303 ISIDLRKSANPKIVLNKLFKHTQLQRTFGIIMLALVDGE-PEVLSLKEVLQHYLEHQKEV 361 Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQV 428 + RR+ + + RV IL+GL A+ NID ++ IR+ + + ++S F LT+ Q Sbjct: 362 VTRRTKYNLDKAQSRVHILEGLKTAFNNIDAVVKTIRSSESKNVAQERLISDFDLTKKQA 421 Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488 AIL +RL+ L LE +I+SE L+ E E + S+L S ++ + I EI +KE K Sbjct: 422 KAILRMRLQRLTGLEIEKIESEYQKLIEEIEYLKSILASEEKLLDIIKDEILVLKE---K 478 Query: 489 STDLGRRRTTFCEVSRA----------DKATLQQAMIEKEPITVVISNRGWIRSLKSHSV 538 D R + E+ A I++ P+ S R + + Sbjct: 479 YKDERRTKIVDQEIDLAVEDLIEEEEILITITDNNYIKRIPLDTYRSQHRGGRGIIGINP 538 Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDL 596 D DS++ T D +L + G+ Y L + S + G AI L+D+ Sbjct: 539 DAK-------DSVEQLYTTSTHDYLLFFTNQGRTYRLKGYQIPDASRQAKGTAIINLLDM 591 Query: 597 NHNQDIVTAFV----YDSTCKLLVVSSKGNAFIVEESEI--IANTRKGKTFLKVSSEEKM 650 N+ VTA + +D LL+V+ +G IV+ +E+ G L + +++ Sbjct: 592 EPNER-VTAVIPVEDFDLDDYLLMVTEQG---IVKRTELQEFNTNYTGLIALDLQQNDEL 647 Query: 651 KLVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSRG----KGVRLQSY---------KDGG 696 V TG ++G L I F+ ++ M R KG+ L S KDGG Sbjct: 648 IEVRLTTGQEDIILGTELGLAIRFNESEVRSMGRTARGVKGIDLASQDKVVGADIIKDGG 707 >gi|223932337|ref|ZP_03624340.1| DNA gyrase, A subunit [Streptococcus suis 89/1591] gi|302023856|ref|ZP_07249067.1| DNA gyrase subunit A [Streptococcus suis 05HAS68] gi|330832892|ref|YP_004401717.1| DNA gyrase subunit A [Streptococcus suis ST3] gi|28189063|dbj|BAC56214.1| DNA gyrase subunit A [Streptococcus suis] gi|223899018|gb|EEF65376.1| DNA gyrase, A subunit [Streptococcus suis 89/1591] gi|329307115|gb|AEB81531.1| DNA gyrase subunit A [Streptococcus suis ST3] Length = 814 Score = 411 bits (1056), Expect = e-112, Method: Compositional matrix adjust. Identities = 232/616 (37%), Positives = 373/616 (60%), Gaps = 40/616 (6%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 ++N+ V+L ++ ++ YA+S I RA+PD+RDG KPVHRRI++ M+E+G+ K Sbjct: 3 DKNLVTVNLTNEMKSSFIDYAMSVIVSRALPDVRDGLKPVHRRILYGMNELGITPDKPHK 62 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSARI G+V+GK HPHGD ++Y+++VR+AQ + R+ L+ G GNFG++DGD AAA RYTE Sbjct: 63 KSARITGDVMGKYHPHGDSAIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTE 122 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 ARM+++A +L+ ++++ V+F D Y+ + EP V P++FPNLL NGT+GIAVGMAT+IP Sbjct: 123 ARMSKIALEMLRDINKNTVNFADNYDASEREPEVLPARFPNLLVNGTTGIAVGMATNIPP 182 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E EA ++DNPE++ +++E + GPDFPTG +++ + I +Y G+G +R Sbjct: 183 HNLGETIEAVKLVMDNPEVTTREIMEVLPGPDFPTGALVM-GKSGIHRAYETGKGSIVLR 241 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312 +R +EE G G IVVTE PY V KS++ E I +L+ KRI + +RDES E VR V Sbjct: 242 SRTEIEEYGNGRERIVVTEFPYMVNKSKVQEHIVKLVQEKRIEGITAVRDESNREGVRFV 301 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 + + R ++++ ++F + ++T F NM + G VP+++ + IL+ ++ H++EV+ Sbjct: 302 IEVR-RDASANVILNNLFKQTQLQTNFSFNMLAIQNG-VPKILSVRQILESYIEHQKEVV 359 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVD 429 RR+ F + + R IL+GLLIA +IDE+I IIRN + + ++ +F L+ Q Sbjct: 360 TRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRNSETDAIAQAELMEKFDLSVRQSQ 419 Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489 AIL++RLR L LE +I+SE D L+A + +L ++ I E+ EVK ++ Sbjct: 420 AILDMRLRRLTGLERDKIQSEYDELVALIADLADILAKPERVVQIIKDELEEVKRKYADP 479 Query: 490 TDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSL--------KSHSVDL 540 RRT E+ + +L+ + +IE+ + + +SN+G+I+ L K + Sbjct: 480 -----RRT---ELMVGEVLSLEDEDLIEETDVLITLSNQGYIKRLAQDEFQAQKRGGRGV 531 Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLLSGRG 585 K+ D ++ + T DR+L + G+ Y LP NLL Sbjct: 532 QGTGVKDDDFVRELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLE- 590 Query: 586 HGEAIQLLIDLNHNQD 601 EAIQ +I++ +Q+ Sbjct: 591 ENEAIQTIINVTKDQE 606 >gi|324992859|gb|EGC24779.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus sanguinis SK405] Length = 826 Score = 411 bits (1056), Expect = e-112, Method: Compositional matrix adjust. Identities = 231/614 (37%), Positives = 366/614 (59%), Gaps = 38/614 (6%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 + N+ V+L ++ ++ YA+S I RA+PD+RDG KPVHRRI++ M+E+G+ K Sbjct: 10 DRNLVNVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPEKPHK 69 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSARI G+V+GK HPHGD S+Y+++VR+AQ + RY L+ G GNFG++DGD AAA RYTE Sbjct: 70 KSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYTE 129 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 ARM+++A +L+ ++++ VD+ D Y+ + EPVV P++FPNLL NG +GIAVGMAT+IP Sbjct: 130 ARMSKIALEMLRDINKNTVDYIDNYDASEREPVVLPARFPNLLVNGATGIAVGMATNIPP 189 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E +A ++DNP+ + ++E + GPDFPTG +++ + I +Y G+G +R Sbjct: 190 HNLGESIDAVKLVMDNPDATTRDIMEVLPGPDFPTGALVM-GKSGIHRAYETGKGSIVLR 248 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313 +R +EE+ G IVVTE PY V K+++ E I L+ KRI + +RDES + + Sbjct: 249 SRTEIEEMKNGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVCFV 308 Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373 R +++ ++F L+ M+T F NM + G VP+++ L IL ++ H++EV+ Sbjct: 309 IEVRRDASAHVILNNLFKLTQMQTNFSFNMLAIQNG-VPKILSLREILLAYIEHQKEVVI 367 Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDA 430 RR++F + + R IL GLLIA +IDE+I IIRN + + + ++++F L+E Q A Sbjct: 368 RRTAFDKEKAEARAHILAGLLIALDHIDEVIRIIRNSETDAEAQAELMAKFELSERQSQA 427 Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490 IL++RLR L LE +I+SE D L+A + +L ++ I E+ EVK F+ Sbjct: 428 ILDMRLRRLTGLERDKIQSEYDELIALIADLADILAKPERVIAIIKEELDEVKRKFADD- 486 Query: 491 DLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSL--------KSHSVDLS 541 RRT E+ + +L+ + +IE+ + + +SN+G+I+ L K + Sbjct: 487 ----RRT---ELMVGEVLSLEDEDLIEEADVLITLSNKGYIKRLNQAEFTAQKRGGRGVQ 539 Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLLSGRGH 586 K+ D +K + T DR+L + G+ Y LP NLL Sbjct: 540 GTGVKDDDFVKELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLK-LDE 598 Query: 587 GEAIQLLIDLNHNQ 600 GE IQ +I++ ++ Sbjct: 599 GETIQTIINVQQDR 612 >gi|110598903|ref|ZP_01387151.1| DNA gyrase, A subunit [Chlorobium ferrooxidans DSM 13031] gi|110339480|gb|EAT58007.1| DNA gyrase, A subunit [Chlorobium ferrooxidans DSM 13031] Length = 828 Score = 411 bits (1056), Expect = e-112, Method: Compositional matrix adjust. Identities = 237/596 (39%), Positives = 349/596 (58%), Gaps = 28/596 (4%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 E + +S+ + YL Y++S I RA+PD+RDG KPVHRR+++ M E+GL G KK Sbjct: 4 ERILPISIEEEMRGSYLDYSMSVIVSRALPDVRDGLKPVHRRVLYGMHELGLQAGKPHKK 63 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 SARIVGEV+GK HPHGD +VYDSLVRL Q F RYPLI GQGNFG++DGDS AA RYTE Sbjct: 64 SARIVGEVLGKFHPHGDTAVYDSLVRLVQDFSMRYPLIDGQGNFGSVDGDSPAAMRYTEV 123 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 RM +A +L+ +D+ VDF +++ EP V PS PNLLANG+SGIAVGMAT+IP Sbjct: 124 RMKAIAGEMLKDLDKGTVDFALNFDDSLEEPTVLPSAIPNLLANGSSGIAVGMATNIPPQ 183 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 N++EI + +ALI NPE+ + L++++I PDFPTGGII E + +Y GRG +RA Sbjct: 184 NLREIVDGMIALIANPELEVADLMKFVIAPDFPTGGIIY-GYEGVRNAYMTGRGKVVIRA 242 Query: 255 RWCVEEVGR-GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313 R VE + G I+VTE+PYQV K RLIEKI EL+ K++ + DIRDES D ++ Sbjct: 243 RALVEVTQKNGRESIIVTELPYQVNKVRLIEKIVELVHDKKLEGIADIRDESDRDGMRLV 302 Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373 R +++ +++ + M+ F + M L G VP+V+ L ++ ++ HR E++ Sbjct: 303 IELKRDAVAKVVLNNLYKHTPMQDTFGVIMLALVDG-VPRVLNLKEMMIYYIKHRNEIVL 361 Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDA 430 RR+ F + ++R IL+GL I N+DE+I IR + + + ++ RF L+E Q A Sbjct: 362 RRTKFDLDTAEKRAHILEGLKICLDNLDEVITTIRQSPDANTAQEKLMERFGLSELQSKA 421 Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490 IL +RL+ L +E +I E LA E + +L+S ++Q I E+ +V+E++ + Sbjct: 422 ILEMRLQRLTGMERKKIDMEYTETLALIEALKFILSSPEKQMEIIREELLKVREVYGDA- 480 Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DLSA 542 RRT E+ + + MI +E + + I++ G+I+ ++ Sbjct: 481 ----RRT---EIVPQEGDFSIEDMIAQEDVVITITHDGFIKRFPVSGYRRQARGGQGVTG 533 Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLP-AGNLLSGRGHGEAIQL 592 K D ++ A T + IL + G K Y +P AG GR ++L Sbjct: 534 AQAKHDDFIEHMFIASTHNYILFFTNRGRCYWLKVYEIPEAGRAARGRALANIMEL 589 >gi|293395209|ref|ZP_06639495.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Serratia odorifera DSM 4582] gi|291422386|gb|EFE95629.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Serratia odorifera DSM 4582] Length = 921 Score = 411 bits (1056), Expect = e-112, Method: Compositional matrix adjust. Identities = 272/730 (37%), Positives = 410/730 (56%), Gaps = 73/730 (10%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + V++ L+ YL YA+S I RA+PD+RDG KPVHRR+++AM+ +G D+ +KKSA Sbjct: 49 ITPVNIEDELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKPYKKSA 108 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD +VYD++VRLAQPF RY L+ GQGNFG++DGDSAAA RYTE RM Sbjct: 109 RVVGDVIGKYHPHGDSAVYDTIVRLAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEVRM 168 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 +++A +L ++++ VDF Y+ + P V P+K PNLL NG+SGIAVGMAT+IP HN+ Sbjct: 169 SKIAHELLADLEKETVDFVPNYDGTEQIPAVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 228 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ LA ID+ ISIE L+E+I GPDFPT II R I E+YR GRG +RAR Sbjct: 229 SEVISGCLAYIDDENISIEGLMEHIPGPDFPTAAII-NGRRGIEEAYRTGRGKVYIRARA 287 Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314 VE + G I+V EIPYQV K+RLIEKIAEL+ KR+ + +RDES +D +RIV+ Sbjct: 288 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVVE 347 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K ++ ++++ +++ L+ ++ F +NM L G+ P+++ L IL+ ++ HRREV+ R Sbjct: 348 VKRDAVG-EVVLNNLYSLTQLQVTFGINMVALHQGQ-PKLLNLKDILQAFVRHRREVVTR 405 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS--------------- 419 R+ F ++ R IL+ L IA NID II +IR P V+ Sbjct: 406 RTIFELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKVALVAQPWDLGNVGAML 465 Query: 420 ----------------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457 ++ LTE Q AIL+LRL+ L LE ++ E LL Sbjct: 466 ERAGDDAARPEWLEPEFGIRDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLNF 525 Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517 ++ +L S + I E+ V++ F +RRT E++ + +I + Sbjct: 526 IAELIFILQSPDRLMEVIREELEAVRDQFGD-----QRRT---EITANSSDINIEDLINQ 577 Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569 E + V +S++G+++ + + SA KE D + L A+T D IL S+ Sbjct: 578 EDVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSR 637 Query: 570 GKAYTLPAGNLL-SGRG-HGEAIQLLIDLNHNQDIVTAFV----YDSTCKLLVVSSKGNA 623 G+ Y + L + RG G I L+ L ++ I TA + Y+ + + ++ G Sbjct: 638 GRLYWMKVYQLPEASRGARGRPIVNLLPLEADERI-TAILPVREYEEGRHVFMATASGT- 695 Query: 624 FIVEESEIIANTR-KGKTFLKVSSEEKMKLV-VKVT--GDHVAVVGENRKLLIFSIDQIP 679 V+++ + +R + + V+ E +L+ V +T + V + N K++ F Q+ Sbjct: 696 --VKKTALTEFSRPRSAGIIAVNLNEGDELIGVDLTDGSNEVMLFSANGKVVRFPESQVR 753 Query: 680 EMSR-GKGVR 688 M R GVR Sbjct: 754 SMGRTATGVR 763 >gi|307825274|ref|ZP_07655494.1| DNA gyrase, A subunit [Methylobacter tundripaludum SV96] gi|307733730|gb|EFO04587.1| DNA gyrase, A subunit [Methylobacter tundripaludum SV96] Length = 877 Score = 411 bits (1056), Expect = e-112, Method: Compositional matrix adjust. Identities = 237/602 (39%), Positives = 352/602 (58%), Gaps = 56/602 (9%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 V+L +++ YL YA+S I RA+PD+RDG KPVHRR+++AMSE+G D+ +KKSAR+V Sbjct: 11 VNLEDEMKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSELGNDWNKPYKKSARVV 70 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGD +VYD++VR+AQ F RY LI GQGNFG++DGDS AA RYTE RM+++ Sbjct: 71 GDVIGKYHPHGDTAVYDTMVRMAQNFSMRYMLIDGQGNFGSVDGDSPAAMRYTEVRMSKI 130 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A +L +D++ VDF Y+E +SEP V P++ P LL NG+SGIAVGMAT+IP HN+ E+ Sbjct: 131 AHELLADLDKETVDFAPNYDESESEPKVLPTRVPTLLINGSSGIAVGMATNIPPHNLSEV 190 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 A LA+ID P++++ L+ +I GPDFPT II I +Y GRG +RAR E Sbjct: 191 ISACLAMIDQPDLTVHDLMAHIPGPDFPTAAII-NGASGIYNAYTTGRGKIYLRARCHFE 249 Query: 260 EVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318 ++G S I+ TE+PYQV K+RL+EKIAEL+ ++ + +RDES +D ++ R Sbjct: 250 DIGDSSRQAIITTELPYQVNKARLLEKIAELVKEGKLEGISGLRDESDKDGMRMVIELRR 309 Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378 P++++ +++ + +T F +NM L GR P M L I+ ++ HRRE++ RR+ + Sbjct: 310 GEMPEVVLNNLYKQTQFQTVFGINMVALLDGR-PHCMNLREIISAFINHRREIVTRRTIY 368 Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIR-----------------------------N 409 ++ R IL+GL IA NIDE+IA+I+ + Sbjct: 369 NLRKARERAHILEGLAIALANIDEMIALIKAAATPADAKVGLLEKNWDAGLVAALLDRAD 428 Query: 410 EDKPKP--------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKI 461 D+ +P + + L+E Q AIL LRL L LE+ +I +E LL + ++ Sbjct: 429 ADRSRPDDLPVEFGIHAGIYRLSETQAQAILELRLHRLTGLEQDKIVNEYKQLLEQIDEY 488 Query: 462 DSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPIT 521 +L S + I E+ +KE +S RRT E+ + + +I +E + Sbjct: 489 LFILGSDVRLMEIIREELVAIKEQYSDE-----RRT---EILQNHSDLSDEDLITEEDMV 540 Query: 522 VVISNRGWIRS--LKSHSVDL------SALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573 V +S+ G+++S L + SA KE D + + A+T D IL S+ GK Y Sbjct: 541 VTMSHEGYVKSQPLSDYKAQRRGGRGKSATATKELDYVDKLIVANTHDTILCFSSRGKVY 600 Query: 574 TL 575 L Sbjct: 601 WL 602 >gi|116493580|ref|YP_805314.1| DNA gyrase, A subunit [Lactobacillus casei ATCC 334] gi|116103730|gb|ABJ68872.1| DNA gyrase subunit A [Lactobacillus casei ATCC 334] Length = 873 Score = 411 bits (1056), Expect = e-112, Method: Compositional matrix adjust. Identities = 245/714 (34%), Positives = 407/714 (57%), Gaps = 57/714 (7%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 E + V+L + + +L YA+S I RA+PD+RDG KPV RRI++ M+E+G+ +K Sbjct: 6 ESRITNVNLGETMRKSFLEYAMSVIVARALPDVRDGLKPVQRRILYGMNELGVTPDKPYK 65 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSARIVG+V+GK HPHGD S+Y+ LVR+AQ F RY L+ G GNFG++DGD AAA RYTE Sbjct: 66 KSARIVGDVMGKYHPHGDSSIYEGLVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAMRYTE 125 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 ARM+++A +L+ +++D +DF+D Y+ + EPVV P++FPNLL NG +GIAVGM T+IP Sbjct: 126 ARMSKIAVEMLRDINKDTIDFQDNYDGTEKEPVVLPARFPNLLVNGATGIAVGMTTNIPP 185 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E A L+DNP+ + L++ + GPDFPTGG+++ + I +Y GRG +R Sbjct: 186 HNLSETISALHVLMDNPDATTADLMQALPGPDFPTGGVVM-GKSGIRHAYETGRGTIVLR 244 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313 + V+ G IV+TEIPY V K++++E+IA+L+ K+I + +RDES D ++ Sbjct: 245 GKVDVQTEKSGRERIVITEIPYMVNKAKMVERIADLVHEKKIDGIVTLRDESDRDGMRIV 304 Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373 R +++ +++ L+ ++T F NM + G P+V+ L IL+ +L H+ V+ Sbjct: 305 IDVRRDASASVILNNLYKLTPLQTGFSFNMVAIVNG-APKVLSLKQILQYYLDHQENVIR 363 Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDA 430 RR+ F ++ + R IL+GL IA +IDEII IIR+ DK K +++ +F L++ Q A Sbjct: 364 RRTQFDLRKANAREHILEGLRIALDHIDEIITIIRSSETGDKAKVILMDKFKLSDKQSQA 423 Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490 IL++RL L LE +++SE ++ A +L ++ I E+ ++++ F Sbjct: 424 ILDMRLVRLTGLEREKVESEYKDVEAAIADYTDILARPERVHQIIYNELLDIQKKFGD-- 481 Query: 491 DLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSLKSHSVD--------LS 541 +RRT E+ + +L+ + +IE+E + + +S+ G+++ L + + Sbjct: 482 ---KRRT---ELLVGEVLSLEDEDLIEQEDVVITLSHNGYVKRLATSEFKAQNRGGRGIQ 535 Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAY---------------TLPAGNLLSGRGH 586 ++ + D ++ + T D +L + GK Y +P NLL G G Sbjct: 536 GMNVHDDDFVERLISTSTHDVLLFFTNKGKVYRSKGYEIPEYGRTAKGIPIINLL-GVGA 594 Query: 587 GEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEI--IANTR-KGKTFLK 643 GE IQ +I+++ + + L V+ KG +V+ + + AN R G L Sbjct: 595 GEKIQTVINVHEGE--------NDDRYLFFVTQKG---VVKRTPVKEFANIRSNGLIALN 643 Query: 644 VSSEEKMKLVVKVTGDHVAVVGENRKL-LIFSIDQIPEMSRG----KGVRLQSY 692 + E+++ V+ +G ++G + + F + M R +G+RL+ + Sbjct: 644 LKDEDELNNVILTSGQDNILIGTHLGYSVTFKEQDVRSMGRSATGVRGIRLREH 697 >gi|119386572|ref|YP_917627.1| DNA gyrase subunit A [Paracoccus denitrificans PD1222] gi|119377167|gb|ABL71931.1| DNA gyrase, A subunit [Paracoccus denitrificans PD1222] Length = 913 Score = 410 bits (1055), Expect = e-112, Method: Compositional matrix adjust. Identities = 264/747 (35%), Positives = 405/747 (54%), Gaps = 78/747 (10%) Query: 4 DNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63 +N + ++ + + + + YL YA+S I RAIPDLRDG KPVHRR++ AM E Sbjct: 13 ENGGSERAVMHHDGPVIDIAHEMRSSYLDYAMSVIVSRAIPDLRDGLKPVHRRVLFAMHE 72 Query: 64 MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123 G ++KSAR VG+ +GK HPHGD S+YD+LVR+AQ F PL+ GQGNFG++DG Sbjct: 73 TGNTHDKPYRKSARPVGDTMGKYHPHGDASIYDALVRMAQDFSMSLPLLDGQGNFGSMDG 132 Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183 DS AA RYTE RM + + +L +D+D V+F+D Y+ +D EP V P++FPN+L NG GI Sbjct: 133 DSPAAMRYTEVRMDKPSAYLLMDIDKDTVEFQDNYDGKDREPTVLPARFPNMLVNGAGGI 192 Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243 AVGMAT+IP HN+ E+ +A LALI++P++ E+LLE + GPDFPTGGII+ R ++Y Sbjct: 193 AVGMATNIPPHNLGEVVDATLALIEDPDLPTERLLEIVPGPDFPTGGIIL-GRSGARKAY 251 Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303 GRG VRA+ +EE G I++ EIP+QV K+ LIEKIAEL KRI + ++D Sbjct: 252 LEGRGSIIVRAKTRIEETRAGRQAIILDEIPFQVNKASLIEKIAELAKEKRIEGIAHVQD 311 Query: 304 ESAE-DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362 ES VR+V+ K R ++++ +F + M+T F NM L+ GR P+ + L L Sbjct: 312 ESDRVGVRVVIELK-RDATAEVVLNQLFRFTPMQTSFGANMLALNGGR-PEQLTLRDFLT 369 Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN------------- 409 +L R EV+ RR+++ ++ R +L GL +A N+DE++A IR+ Sbjct: 370 HFLTFREEVVARRTAYELRKARERAHVLCGLAVAVSNVDEVVATIRSSADAAEARERLMT 429 Query: 410 ---------------EDKPKPVMV-SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453 +D PV ++L+E Q AIL LRL+ L +L ++ EL + Sbjct: 430 RRWPAHEIVEYLKLIDDPLHPVNEDGTYNLSETQARAILELRLQRLTQLGVQEVTDELKS 489 Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513 L + ++L S ++ I+ E+REVK +F+ RRT E++ + Sbjct: 490 LAEAIREFLAILASRERIMGIISDELREVKNLFAVP-----RRT---EITDWAGDLDDED 541 Query: 514 MIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565 +IE+E + V I++ G+I R+ + LS + KE D + A+T +L Sbjct: 542 LIEREDMVVTITSGGYIKRTALAEFRAQRRGGKGLSGMATKEDDVVTTLFVANTHTELLF 601 Query: 566 LSTDGKAYTLPAGNL-LSGR-GHGEAIQLLIDLNHNQDIVTAFVYDST------CKLLVV 617 +TDG Y L L L GR G+AI ++ + I D+ +++ Sbjct: 602 FTTDGMVYRLKTWRLPLGGRTAKGKAIVNILPIGSGVSIAALMPVDAPQSEWDGYQVIFS 661 Query: 618 SSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQ 677 +S+G+ S+ R GK +K+ V++ G +A E+ +++F+ Sbjct: 662 TSEGDVRRNALSDFANVMRNGKIAMKLPEG------VELIGARMAT--ESDDVMLFT--- 710 Query: 678 IPEMSRGKGVRLQSYKDGGISDVICFK 704 + G+ +R Q+ +DV FK Sbjct: 711 ----AAGRAIRFQT------TDVRVFK 727 >gi|325123121|gb|ADY82644.1| DNA gyrase, subunit A, type II topoisomerase [Acinetobacter calcoaceticus PHEA-2] Length = 904 Score = 410 bits (1055), Expect = e-112, Method: Compositional matrix adjust. Identities = 267/733 (36%), Positives = 413/733 (56%), Gaps = 74/733 (10%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 ++ +++ L+ YL YA+S I RA+PD+RDG KPVHRR+++AM E+G D+ A+KKSA Sbjct: 6 IRPIAIEDELKHSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMHELGNDYNKAYKKSA 65 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD +VY+++VR+AQ F RY L+ GQGNFG+IDGDSAAA RYTE RM Sbjct: 66 RVVGDVIGKYHPHGDSAVYETIVRMAQDFSLRYLLVDGQGNFGSIDGDSAAAMRYTEVRM 125 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 T++A +L +++D VD+ D Y+ + P V P++ PNLL NG +GIAVGMAT++ HN+ Sbjct: 126 TKLAHELLADLEKDTVDWEDNYDGSERIPEVLPTRVPNLLINGAAGIAVGMATNMAPHNM 185 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ A LA DNP ISIE L+EYI GPDFPTGGII + IV++YR G+G +R ++ Sbjct: 186 TEVVNACLAYADNPNISIEGLMEYITGPDFPTGGIIY-GKSGIVDAYRTGKGRLHIRGKY 244 Query: 257 CVEEVGR-GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLF 314 EE + G IV TEIPYQV K+R+IE+IAEL+ K++ + ++RDES E +RI + Sbjct: 245 HFEEDEKTGRTTIVFTEIPYQVNKARVIERIAELVKEKKLEGISELRDESDKEGMRIAID 304 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K R + ++++ ++F+ + +E F +NM L G+ P++M L I+ ++ HR+EV+ R Sbjct: 305 LK-RGENAEVVVNNLFLNTQLENSFSINMVCLDNGQ-PKLMNLKDIIAAFIRHRQEVVTR 362 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN------------------------- 409 R+ F ++ R IL+GL +A NIDEII I+ Sbjct: 363 RTMFELRKARERGHILEGLTVALANIDEIIETIKTSANPAEARERLLAGEWADGGVVSLL 422 Query: 410 ---------------EDKPKPVMVSR--FSLTENQVDAILNLRLRSLRKLEEYQIKSELD 452 ED +P ++ + L+ QV AIL LRL L LE+ ++ +E Sbjct: 423 EKAGAISVRPDEIEGEDPNRPFGLTESIYRLSPTQVGAILELRLHRLTGLEQDKLHAEYT 482 Query: 453 NLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ 512 +L + ++ ++LN +N + IRE + + G RRT E SR D + ++ Sbjct: 483 EILGQIAELTAILN----DFNLLMAVIREELALVLQQYGDG-RRTEIIE-SRIDFS--RE 534 Query: 513 AMIEKEPITVVISNRGWIRS--LKSHSVDL------SALHFKEGDSLKIALHAHTTDRIL 564 +I +E + + +S G+ ++ L + SA K+ D ++ + A +L Sbjct: 535 DLIPEEQVVLTVSQTGYAKTQPLSDYQAQRRGGRGKSATSMKDDDFIQHLIVASNHATVL 594 Query: 565 LLSTDGKAYTLPAGNL-LSGRG-HGEAIQLLIDLNHNQDIVTAFV----YDSTCKLLVVS 618 + GK Y L + + RG G I L+ L+ N+ VTA + + + + + Sbjct: 595 CFTNVGKVYRLRVFEVPQASRGAKGRPIVNLLPLDANE-TVTAILPLTEFPENHYVFMAT 653 Query: 619 SKGNAFIVEESEIIANTR-KGKTFLKVSSEEKMKLVVKVTGDHVAVVGENR-KLLIFSID 676 + G V + E AN R G ++++ E+ + V G+ ++ N K + F+ Sbjct: 654 ASGTVKRV-DLEQFANIRSNGLRAIELNEEDTLIGVAITDGNQQIMLFSNEGKAIRFAET 712 Query: 677 QIPEMSR-GKGVR 688 + M R KGVR Sbjct: 713 DVRAMGRTAKGVR 725 >gi|259047899|ref|ZP_05738300.1| DNA gyrase, A subunit [Granulicatella adiacens ATCC 49175] gi|259035576|gb|EEW36831.1| DNA gyrase, A subunit [Granulicatella adiacens ATCC 49175] Length = 861 Score = 410 bits (1055), Expect = e-112, Method: Compositional matrix adjust. Identities = 243/702 (34%), Positives = 406/702 (57%), Gaps = 30/702 (4%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 EE ++ L + + +L Y++S I RA+PD+RDG KPVHRRI++ MSE+G+ K Sbjct: 9 EETFESTDLVQTMRKSFLEYSMSVIVSRALPDVRDGLKPVHRRILYGMSELGVTPDKPHK 68 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSARIVG+V+GK HPHGD ++YD++VR+AQ F RYPLI G GNFG++DGD AAA RYTE Sbjct: 69 KSARIVGDVMGKYHPHGDSAIYDAMVRMAQDFSYRYPLIDGHGNFGSVDGDGAAAMRYTE 128 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 ARM+++A +L+ +++D ++FRD Y+ + EP V P++ PNLL NG +GIAVGMAT+IP Sbjct: 129 ARMSKIALEMLRDINKDTINFRDNYDSTEREPEVLPARIPNLLVNGATGIAVGMATNIPP 188 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E+ A L+ NP+++ +L+E + GPDFPTGGI++ + I +Y GRG VR Sbjct: 189 HNLAEVISALHLLMKNPDVTTTELMEALPGPDFPTGGIVL-GKSGIRRAYETGRGSITVR 247 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313 R +EE+ G I++TE+PY V K+RL+E+IA+L K+I + + DES V+ Sbjct: 248 GRVQIEELKNGKERIIITELPYMVNKARLVERIAQLHHEKKIEGITYLNDESDRVGMRVV 307 Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373 R + +++ +++ L+ +++ F NM + + + P+V+ L IL+ +L H+ EV+ Sbjct: 308 IEVRRDVSASVVLNNLYKLTPLQSNFGFNMLAI-VNQEPKVLSLKEILRHYLDHQEEVVR 366 Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDA 430 RRS F + + R IL+GL IA +ID I+AI+R+ D K ++ + L++ Q A Sbjct: 367 RRSLFDKKKAEDRAHILEGLQIALDHIDAIVAILRSSASGDIAKDRFMNEYGLSDKQAQA 426 Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490 IL++R+ L LE +I +E + L A + ++ +L S + ++ I E+ E+++ F Sbjct: 427 ILDMRMVRLTGLEREKIDAEYNELQATIQYLEKVLASEELRYEIIEQELLEIQQRFDNP- 485 Query: 491 DLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSLKSHSVD--------LS 541 RRT E+ + +L+ + +IE+E + + ++ G+I+ L + + Sbjct: 486 ----RRT---ELLVGEALSLEDEDLIEQEDVVITLTKNGYIKRLANTEFKAQRRGGRGVQ 538 Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHN 599 + + D ++ + T D +L + GK Y + S G + L++++ Sbjct: 539 GMSVHDDDYVENMISCSTHDSLLFFTNTGKVYQAKGYEIPEYSRTAKGLPVINLLNIDSA 598 Query: 600 ---QDIVTAFVYDSTCKLLVVSS-KGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655 Q I++ D T + L ++ +G V SE G +++ ++++ VV Sbjct: 599 EKIQAIISVPESDETERYLFFTTLRGTVKRVRLSEFKNIRTNGLRAIQLREDDELIRVVV 658 Query: 656 VTGDHVAVVGE-NRKLLIFSIDQIPEMSR-GKGVRLQSYKDG 695 +G+ ++G + + F D++ M R GVR S +DG Sbjct: 659 TSGNDGIILGTYHGNAVSFHEDKVRAMGRTASGVRGVSLRDG 700 >gi|290473791|ref|YP_003466665.1| DNA gyrase subunit A, type II topoisomerase [Xenorhabdus bovienii SS-2004] gi|289173098|emb|CBJ79871.1| DNA gyrase, subunit A, type II topoisomerase [Xenorhabdus bovienii SS-2004] Length = 880 Score = 410 bits (1055), Expect = e-112, Method: Compositional matrix adjust. Identities = 260/687 (37%), Positives = 390/687 (56%), Gaps = 65/687 (9%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + V++ L+ YL YA+S I RA+PD+RDG KPVHRR++ AM+ +G D+ ++KKSA Sbjct: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKSYKKSA 67 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD +VYD++VRLAQPF RY L+ GQGNFG++DGDSAAA RYTE RM Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRLAQPFSMRYMLVDGQGNFGSVDGDSAAAMRYTEVRM 127 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 ++A +L ++++ V+F Y+ + P V P++ PNLL NG+SGIAVGMAT+IP HN+ Sbjct: 128 AKIAHELLADLEKETVNFVPNYDGTEQIPDVMPTRIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ + LA ID+ ISIE L+EYI GPDFPT II R I E+YR GRG +RAR Sbjct: 188 SEVVDGCLAYIDDENISIEGLMEYIPGPDFPTAAII-NGRRGIQEAYRTGRGKIYIRARA 246 Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314 +E + G I+V EIPYQ+ K+RLIEKIAEL+ KRI + +RDES +D +RIV+ Sbjct: 247 KIETDEKNGRETIIVNEIPYQINKARLIEKIAELVKDKRIEGISALRDESDKDGMRIVIE 306 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K R ++++ +++ L+ ++ F +NM L G+ P+++ L IL ++ HRREV+ R Sbjct: 307 VK-RDAVAEVVLNNLYSLTQLQVSFGINMVALHQGQ-PKLLNLKDILSAFINHRREVVTR 364 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-------------------------- 408 R+ F ++ R IL+ L +A +NID I +IR Sbjct: 365 RTIFELRKARERAHILEALAVALVNIDSAIELIRRASTPAEAKANLIAQAWELGNVSAML 424 Query: 409 ---NEDKPKP--------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457 +D +P + ++ LTE Q AIL+LRL+ L LE ++ E LL Sbjct: 425 EQAGDDAARPEWLEPEYGIHDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYRELLKL 484 Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517 ++ +L + ++ I E+ +K+ ++ + RRT E S AD + +I + Sbjct: 485 IGELLFILENPERLREVIREELLAIKDQYNDA-----RRTELTENS-ADINI--EDLINQ 536 Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569 E + V +S++G+++ + + SA KE D L+ L A+T D IL S Sbjct: 537 EDVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFLERLLVANTHDTILCFSNK 596 Query: 570 GKAYTLPAGNLL-SGRG-HGEAIQLLIDLNHNQDIVTAFV----YDSTCKLLVVSSKGNA 623 GK Y + L + RG G I L+ L + I TA + Y+ + + ++ G Sbjct: 597 GKMYWMKVYQLPEASRGARGRPIVNLLPLEQEERI-TAILPVREYEDGLNIFMATASGTV 655 Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKM 650 + SE G +K+S +++ Sbjct: 656 KKTKLSEFSRPRSAGIIAVKLSDGDEL 682 >gi|301156556|emb|CBW16027.1| DNA gyrase (type II topoisomerase), subunit A [Haemophilus parainfluenzae T3T1] Length = 881 Score = 410 bits (1055), Expect = e-112, Method: Compositional matrix adjust. Identities = 251/659 (38%), Positives = 381/659 (57%), Gaps = 64/659 (9%) Query: 13 VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72 + ++ V++ L+ YL YA+S I RA+PD+RDG KPVHRR++ +M + G+ G + Sbjct: 5 IHSSITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQSGITAGKKY 64 Query: 73 KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132 KSAR+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG+IDGD+ AA RYT Sbjct: 65 VKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRYT 124 Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192 E RM ++ + +L +D++ V+F Y+ E P V P++ P LLANG+SGIAVGMAT+IP Sbjct: 125 EVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPALLANGSSGIAVGMATNIP 184 Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252 HN+ E+ + LA IDN I+I++L++YI GPDFPT +I R+ I E+YR GRG V Sbjct: 185 PHNLNEVLDGCLAYIDNENITIDELMQYIPGPDFPTAALI-NGRKGIEEAYRTGRGKVYV 243 Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRI 311 RAR VE +G I+VTE+PYQV K++L+EKIAELI K+I + +I D S E +RI Sbjct: 244 RARASVETTDKGKEQIIVTELPYQVNKAKLVEKIAELIKDKKIEGISNIIDLSNKEGIRI 303 Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371 + K R ++++ ++ L+ M+ F +NM L G+ P++ L I++ ++ HRREV Sbjct: 304 EIDIK-RDAVGEVVLNHLYALTQMQVTFGINMVALDHGQ-PRLFNLKQIIEAFVMHRREV 361 Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSR-------- 420 + RRS F ++ R IL+GL +A NIDEII IIR + K ++SR Sbjct: 362 VIRRSLFELRKARERTHILEGLAVATSNIDEIIDIIRQSKERKEAAEKLISRPWKLNNEI 421 Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457 + L+ QVDAIL LRL L L ++ +E LL + Sbjct: 422 LGLLDAAARPAELAAEFGIKGSDYYLSPEQVDAILELRLHRLTGLATEEVINEYKELLVK 481 Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517 ++ ++NS ++ I E+ +V+ F+ RRT E++ A + +I + Sbjct: 482 IAELLHIINSPERLMEVIREELEQVRAQFADE-----RRT---EITAASGDIDLEDLIAQ 533 Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569 E + V +S+ G+++ + + SA K+ D ++ L A+T D IL S+ Sbjct: 534 EDVVVTLSHEGYVKYQPLTDYEAQRRGGKGKSATKMKDEDFIEKLLVANTHDTILCFSSR 593 Query: 570 GKAYTLPAGNL-LSGRG-HGEAIQLLIDLNHNQDI-----VTAFVYDSTCKLLVVSSKG 621 G+ Y L L + RG G I ++ L N+ I ++A+ D K +++++ G Sbjct: 594 GRLYWLKVYQLPQASRGARGRPIVNILPLQENERITAILPISAYEED---KFVIMATAG 649 >gi|238920518|ref|YP_002934033.1| DNA gyrase subunit A [Edwardsiella ictaluri 93-146] gi|238870087|gb|ACR69798.1| DNA gyrase, A subunit, putative [Edwardsiella ictaluri 93-146] Length = 878 Score = 410 bits (1055), Expect = e-112, Method: Compositional matrix adjust. Identities = 246/605 (40%), Positives = 357/605 (59%), Gaps = 60/605 (9%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + V++ L+ YL YA+S I RA+PD+RDG KPVHRR++ AM+ +G D+ +KKSA Sbjct: 8 ITPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSA 67 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG+IDGDSAAA RYTE RM Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVRM 127 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 ++A +L +D++ VD+ Y+ + P V P+K PNLL NG++GIAVGMAT+IP HN+ Sbjct: 128 AKIAHELLADLDKETVDYVPNYDGTEQIPDVLPTKVPNLLVNGSAGIAVGMATNIPPHNL 187 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ LA ID+ I+IE L+E+I GPDFPT II R I E+YR GRG VRAR Sbjct: 188 TEVINGCLAYIDDENITIEGLMEHIPGPDFPTAAII-NGRRGIEEAYRTGRGKIYVRARA 246 Query: 257 CVEEVGRGSW-CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314 +E + S IVV EIPYQV K+RLIEKIAEL+ KR+ + +RDES +D +RIV+ Sbjct: 247 EIEVDDKNSRETIVVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K ++ ++++ +++ + M+ F +NM L G+ P+++ L L+ ++ HRREV+ R Sbjct: 307 VKRDAVG-EVVLNNLYSQTQMQVSFGINMVALHQGQ-PKLLTLKECLEAFVRHRREVVTR 364 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----------- 420 R+ F ++ R IL+GL IA +NID II +IR P K +VS+ Sbjct: 365 RTIFELRKARGRAHILEGLAIALVNIDPIIELIRRAPTPAEAKAALVSQAWALGNVAAML 424 Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457 + LTE Q AIL+LRL+ L LE ++ E LL + Sbjct: 425 ARAGDDAARPEWLEPQYGIRDGHYHLTEQQAQAILDLRLQKLTGLEHEKLLDEYKALLEQ 484 Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ-QAMIE 516 + +L S ++ I E+ ++E F + RRT A+ A + + +IE Sbjct: 485 IAALIFILQSPERLMEVIREELIAIREQFGDA-----RRTEIT----ANTADINIEDLIE 535 Query: 517 KEPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568 +E + V +S++G+++ + + SA KE D + L A+T D IL S+ Sbjct: 536 QEDVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSS 595 Query: 569 DGKAY 573 G+ Y Sbjct: 596 RGRMY 600 >gi|237755473|ref|ZP_04584096.1| DNA gyrase subunit A [Sulfurihydrogenibium yellowstonense SS-5] gi|237692373|gb|EEP61358.1| DNA gyrase subunit A [Sulfurihydrogenibium yellowstonense SS-5] Length = 793 Score = 410 bits (1055), Expect = e-112, Method: Compositional matrix adjust. Identities = 247/684 (36%), Positives = 393/684 (57%), Gaps = 48/684 (7%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 E++K V + ++ Y+ YA+S I RAIPD+RDG KPV RRI+++M E+GL +KK Sbjct: 2 EDIKKVPIEEEVKSAYIDYAMSVIAGRAIPDVRDGLKPVQRRILYSMYELGLLPNKPYKK 61 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 SAR+VGE +GK HPHGD SVYD+LVR+AQ F RYPLI GQGNFG+IDGD AA RYTEA Sbjct: 62 SARVVGETLGKFHPHGDASVYDALVRMAQDFTMRYPLIEGQGNFGSIDGDPPAAMRYTEA 121 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 R+T++A +L+ +D++ VD ++ EP V PSKFPNL+ NGT+GIAVG+ATSIP H Sbjct: 122 RLTKLAVEMLEDIDKNTVDMMPNFDASLEEPTVLPSKFPNLICNGTTGIAVGLATSIPPH 181 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 N E+ EA L + P+ +IE+L +I GPDFPTGG+I ++E +++ Y+ RG ++ Sbjct: 182 NFTEVAEALKYLAEFPDATIEELFNFIKGPDFPTGGVITNTKEELIDIYKSSRGSITIKG 241 Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVL 313 + +E++ IV+ EIPYQV K LI+KIAEL+ + + D+RDES +RIV+ Sbjct: 242 KARIEKLPGNRQRIVIYEIPYQVNKVELIKKIAELVRTGKEKGISDLRDESDRTGIRIVI 301 Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373 K R D + +++ ++ + +E FP+N+ VL + + P+V+ L +L+E++ HR E++ Sbjct: 302 ELK-RDADAEKVLKKLYKSTPLEKNFPVNLTVL-VDKQPRVLNLKELLQEFIKHRIEIIT 359 Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDA 430 RR+ F ++ + R+ I++GL+ A N D++I I+R+ + + ++ S+F+L+E Q +A Sbjct: 360 RRTLFELEKAENRLHIVEGLITALENADKVIEIVRSSKDTAQARELLTSQFNLSETQANA 419 Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490 IL++RL LE ++K E L + E+ +L+S + +I I E E+ K Sbjct: 420 ILDMRLSRFTSLETQKLKDESTELKQKIERYKQILSSDDE---KIKVFIEETDELVRKYG 476 Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHS-----------VD 539 D +R+TT ++ + KE I N G I + K ++ Sbjct: 477 D--QRKTTIA---------TEKELTFKEHFMFAILNTGRIVNYKVEDETSKADILQRIIN 525 Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHN 599 ++ EG+ + + I + DGKAY +L G LN Sbjct: 526 SLSISLTEGEKIVSIQEVEGSKPIAFFTKDGKAYWSLVIDLPKGEDK---------LNIE 576 Query: 600 QDIV-TAFVYD-STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657 +IV TA+ + ++ +++ KG + + +I K + + + E +LVV V Sbjct: 577 GEIVGTAYQGEGEENRVFLITKKGIIKRMSDEDIFY---KSQGHMVMPLNEGDELVVAVA 633 Query: 658 GDHVAVVG---ENRKLLIFSIDQI 678 H + +G +N LL+F +++ Sbjct: 634 DRHPSYIGIYTKNADLLLFERNEV 657 >gi|89094106|ref|ZP_01167049.1| DNA gyrase subunit A [Oceanospirillum sp. MED92] gi|89081581|gb|EAR60810.1| DNA gyrase subunit A [Oceanospirillum sp. MED92] Length = 866 Score = 410 bits (1055), Expect = e-112, Method: Compositional matrix adjust. Identities = 239/602 (39%), Positives = 355/602 (58%), Gaps = 56/602 (9%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 V++ L++ YL YA+S I RA+PD RDG KPVHRR++ AM+E+G D+ A+KKSAR+V Sbjct: 11 VNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMNELGNDWNKAYKKSARVV 70 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGD +VYD++VR+AQ F RY L+ GQGNFG+IDGDSAAA RYTE RM ++ Sbjct: 71 GDVIGKYHPHGDSAVYDTIVRMAQDFSMRYTLVDGQGNFGSIDGDSAAAMRYTEIRMDKI 130 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 + +L ++++ VDF D Y+ + P V P++ PNLL NG+SGIAVGMAT+IP HN+ E+ Sbjct: 131 SHELLADLEKETVDFVDNYDGTEKIPAVLPNRVPNLLVNGSSGIAVGMATNIPPHNLSEV 190 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 +ALI+N ++S++ L+E+I GPDFPTGGII R I+++YR GRG VRA+ VE Sbjct: 191 VRGCIALIENSDLSVDDLMEFIPGPDFPTGGII-NGRAGILQAYRTGRGRIYVRAKHHVE 249 Query: 260 EVGR-GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318 E + G +++TEIPYQ+ K+RLIEKIAEL+ K+I + ++RDES +D ++ R Sbjct: 250 EDQKSGKASLIITEIPYQLNKARLIEKIAELVKDKKIEGITELRDESDKDGMRIVIELRR 309 Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378 PD+++ ++F + ME+ F +NM L G+ P+++ L L+ ++ HRREV+ RR+ + Sbjct: 310 GEMPDVVINNLFAQTQMESVFGINMVALVDGQ-PKILDLKTALECFIRHRREVVTRRTVY 368 Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRN----------------------------- 409 ++ R IL+GL +A NID +I +I+ Sbjct: 369 LLRKARERGHILEGLAVALANIDPVIELIKTSPTPAEAKERLIAEAWTPGDVIQMLERAG 428 Query: 410 EDKPKP--------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKI 461 ED +P + +++L+ Q AIL LRL L LE ++ +E LL ++ Sbjct: 429 EDACRPEDLEEQYGLREGKYNLSPAQAQAILELRLHRLTGLEHEKLIAEYKELLERIAEL 488 Query: 462 DSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPIT 521 +L S ++ I E+ + E + G R T SR D +I +E + Sbjct: 489 LKILGSHERLMEVIREELEAILEEY------GDERRTEITASRKDLTVAD--LITEEDMV 540 Query: 522 VVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573 V IS+ G+ + S + SA K+ D ++ L A+T D IL + GK Y Sbjct: 541 VTISHGGYAKTQPLTDYQSQRRGGKGKSAAAIKDEDFIEHLLIANTHDTILCFTDRGKVY 600 Query: 574 TL 575 L Sbjct: 601 WL 602 >gi|237749806|ref|ZP_04580286.1| DNA gyrase subunit A [Helicobacter bilis ATCC 43879] gi|229374556|gb|EEO24947.1| DNA gyrase subunit A [Helicobacter bilis ATCC 43879] Length = 831 Score = 410 bits (1055), Expect = e-112, Method: Compositional matrix adjust. Identities = 245/605 (40%), Positives = 374/605 (61%), Gaps = 27/605 (4%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE-MGLDFGAAFKKS 75 +K V + +++E YL Y++S I RA+P+ RDG KPVHRRI++AM +GL A +KK Sbjct: 10 IKPVRIDDSIKESYLDYSMSVIVGRALPNARDGLKPVHRRILYAMKHNLGLTSNAKYKKC 69 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 A+IVGEV+G HPHGD ++YD+LVR+AQ F R L+ GQGNFG+IDGD AAA RYTEA+ Sbjct: 70 AKIVGEVMGNYHPHGDTAIYDALVRMAQDFSMRLELVDGQGNFGSIDGDKAAAMRYTEAK 129 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 MT+V E +L +++D VDF Y+ + EP + P++FPNLL NG++GIAVGMATSIP H Sbjct: 130 MTKVGESMLFDIEKDTVDFVPNYDGSEKEPAILPTRFPNLLVNGSNGIAVGMATSIPPHR 189 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 + E+ +A + I+NP+ IE +L I GPDFPTGGII R+ I+E+Y+ GRG ++RA+ Sbjct: 190 LDEVVDALIYRINNPQSEIEDILPLIEGPDFPTGGII-HGRQGIIEAYKTGRGRIKIRAK 248 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314 VE+ + IVV EIPYQV K+RL E+I L K + + ++RDES +D +R+V+ Sbjct: 249 VHVEKT-KTKDVIVVDEIPYQVNKARLFEQIDTLAKDKVVEGIAEVRDESDKDGMRLVIE 307 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K ++ ++++ ++ S MET F + + + GR P++ L +L +++HR+ ++ R Sbjct: 308 LKREAM-SEIVLNHLYKSSAMETTFGIILLAIE-GREPKIFTLLELLDIFISHRKTIVIR 365 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAI 431 R F ++ RV IL+G IA NIDEI+A+IR N +K + ++SRFSLTE Q AI Sbjct: 366 RIIFELEKARARVHILEGYRIALENIDEIVALIRASENPEKAQSELMSRFSLTEIQSKAI 425 Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491 L +RL+ L LE +I++E L+A +++S+L S + I E+ EV++ FS Sbjct: 426 LEMRLQRLTGLERDKIENEYRELVALIAELESILRSEDKINGVIKEELLEVQKQFSSP-- 483 Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL------KSHSVDLSAL-- 543 RRT E D ++ +I E + V +S+RG+++ + K H + Sbjct: 484 ---RRTLIEE--NYDAIDIED-LIPNEAVVVTMSHRGYVKRVLLKTYEKQHRGGKGKISG 537 Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGRGH-GEAIQLLIDLNHNQD 601 + + D ++ A+T D I+ ++ G+ Y L + +GR G+A+ LI L + Sbjct: 538 NTHDDDFIQSFFVANTHDTIMFITNRGQLYWLKVYRIPEAGRTAIGKAVVNLIGLQDGEK 597 Query: 602 IVTAF 606 I+T Sbjct: 598 IMTTI 602 >gi|238926628|ref|ZP_04658388.1| DNA gyrase subunit A [Selenomonas flueggei ATCC 43531] gi|238885574|gb|EEQ49212.1| DNA gyrase subunit A [Selenomonas flueggei ATCC 43531] Length = 824 Score = 410 bits (1055), Expect = e-112, Method: Compositional matrix adjust. Identities = 239/596 (40%), Positives = 357/596 (59%), Gaps = 23/596 (3%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 V+L ++ Y+ YA+S I RA+PD+RDG KPVHRRI++AM G+ +KKSARIV Sbjct: 22 VNLEHEMKNSYIDYAMSVIVARALPDVRDGLKPVHRRILYAMQGSGMTSSKPYKKSARIV 81 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 GEV+GK HPHGD SVYD++VR+AQ F RY L G GNFG++DGDSAAA RYTE RM+++ Sbjct: 82 GEVLGKYHPHGDSSVYDAIVRMAQDFSMRYMLADGHGNFGSVDGDSAAAMRYTEVRMSKI 141 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 AEL+L+ +D++ VDF D Y+ + EP V P+KFP LL NGT+GIAVGMAT+IP HN+ E+ Sbjct: 142 AELMLRDIDKETVDFTDNYDGSEKEPTVLPAKFPQLLVNGTAGIAVGMATNIPPHNMVEV 201 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 L LIDNP+ +I++L+ I GPDFPT G+I+ + E I ++Y GRG ++RAR +E Sbjct: 202 INGTLMLIDNPDATIDELMGVIKGPDFPTAGLILGT-EEIRKAYTTGRGVIKMRARAHIE 260 Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319 + G I+VTE+PYQV K+RLIEKIAEL+ K+I + D+RDES ++ R Sbjct: 261 TMSNGKPRIIVTELPYQVNKARLIEKIAELVRDKQIDGITDLRDESDRSGMRIVIELRRD 320 Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379 P++++ ++ + ++ F + M L G+ P +M L +L+ ++ H+ V+ RR+ + Sbjct: 321 SAPNVILNQLYKHTQLQDSFGVIMLALVDGQ-PVIMNLKHVLEHYIDHQEMVITRRTRYE 379 Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAII---RNEDKPKPVMVSRFSLTENQVDAILNLRL 436 + + R IL+GL IA ++D +I I R D + ++ F LTE Q AIL+LRL Sbjct: 380 LAKAEARAHILEGLTIALDHLDAVITTIRESRTADIARTALMDGFKLTEKQAQAILDLRL 439 Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496 + L LE +I+ E +L E++ +L + I E+ EV++ K D R Sbjct: 440 QRLTGLEREKIEEEYQEVLKLIEELKGILADRMKVLAIIKNELIEVRD---KYGDKRRTE 496 Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSVDLSALHFKEG 548 TF + S D L I +E + V ++ +I+ + + V + + KE Sbjct: 497 ITF-DASEMDIKDL----IAEEDVVVTLTLNNYIKRIPLDTYRRQRRGGVGVRGMGTKET 551 Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEAIQLLIDLNHNQDI 602 D + L T IL + G+A+ L + + SGR G AI L+ + +++ I Sbjct: 552 DIVSDLLITTTHHDILFFTNRGRAFVLKSYEIPESGRQAKGTAIINLLAVENDERI 607 >gi|315636356|ref|ZP_07891605.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Arcobacter butzleri JV22] gi|118574928|gb|ABL07041.1| DNA gyrase subunit A [Arcobacter butzleri] gi|315479335|gb|EFU70019.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Arcobacter butzleri JV22] Length = 860 Score = 410 bits (1055), Expect = e-112, Method: Compositional matrix adjust. Identities = 243/636 (38%), Positives = 387/636 (60%), Gaps = 43/636 (6%) Query: 10 NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69 N +++ V++ +++ YL Y++S I RA+PD +DG KPVHRRI++AM ++ + Sbjct: 3 NLFENQDIINVNIEDSVKASYLDYSMSVIIGRALPDAKDGLKPVHRRILYAMHDLSITSK 62 Query: 70 AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129 +A+KKSARIVG+VIGK HPHGD SVYD+LVR+AQ F R PL+ GQGNFG+IDGD+AAA Sbjct: 63 SAYKKSARIVGDVIGKYHPHGDTSVYDALVRMAQNFSLRAPLVDGQGNFGSIDGDNAAAM 122 Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189 RYTEARMT++AE +L+ +D+D V+F Y++ EP V P++ P LL NG+ GIAVGMAT Sbjct: 123 RYTEARMTRIAEEVLRDLDKDTVNFVPNYDDTMKEPSVLPTRVPTLLLNGSEGIAVGMAT 182 Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249 IP HN+ E+ EA L LID PE + ++L++++ GPDFPTGG I R I+++Y GRG Sbjct: 183 KIPPHNLGELLEAILYLIDTPEATADELMQFVQGPDFPTGGTIF-GRRGIIDAYNTGRGR 241 Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-ED 308 R+RA+ +E + IV+ E+PYQV K+RLIE IA L K+I + ++RDES E Sbjct: 242 VRIRAKHHIETKAK-KEIIVIDELPYQVNKARLIELIANLAKDKQIDGISEVRDESDREG 300 Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368 +R+V+ K ++ ++++ +++ + MET F + + + + P+V L IL +L+HR Sbjct: 301 IRVVIELKKDAM-SEIVLNNLYKSTPMETTFGIIL-LAVYNKEPKVFNLPQILNIFLSHR 358 Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTE 425 + V+ RR+ F ++ R IL+GL IA NIDE++ IIR N+ + K + +RF L+ Sbjct: 359 KTVIIRRTIFDLEKAKARAHILEGLKIAVDNIDEVVRIIRSSSNDAEAKESLETRFDLSA 418 Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485 Q AIL++RL L L+ ++++E L+ +++++L S ++ I E+ E+KE Sbjct: 419 IQSQAILDMRLGRLTGLQRDKLEAEYQELMILIAELEAILRSEEKLNEIIREELTEIKEK 478 Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545 FS R T E S D+ ++ +I EP+ V I++ G+++ + + + Sbjct: 479 FSND------RKTEIEDS-YDEIDIED-LIPNEPMVVTITHNGYVKRVPIKAYEKQ---- 526 Query: 546 KEGDSLKIALHAH------------TTDRILLLSTDG-----KAYTLPAGNLLSGRGHGE 588 K G K+A+ H T D ++ ++ G K Y +P G+ ++ G+ Sbjct: 527 KRGGKGKVAVTTHDDDFIERFFVSNTHDTLMFVTNMGQLYWLKVYKIPEGSRIA---KGK 583 Query: 589 AIQLLIDLNHNQ---DIVTAFVYDSTCKLLVVSSKG 621 A+ LI+L ++ +I+ +D + L+ + G Sbjct: 584 AVVNLINLRPDEKIMEIIPTPDFDESKSLVFFTRNG 619 >gi|327462166|gb|EGF08493.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus sanguinis SK1] Length = 826 Score = 410 bits (1055), Expect = e-112, Method: Compositional matrix adjust. Identities = 256/713 (35%), Positives = 409/713 (57%), Gaps = 52/713 (7%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 + N+ V+L ++ ++ YA+S I RA+PD+RDG KPVHRRI++ M+E+G+ K Sbjct: 10 DRNLVNVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPEKPHK 69 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSARI G+V+GK HPHGD S+Y+++VR+AQ + RY L+ G GNFG++DGD AAA RYTE Sbjct: 70 KSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYTE 129 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 ARM+++A +L+ ++++ VD+ D Y+ + EPVV P++FPNLL NG +GIAVGMAT+IP Sbjct: 130 ARMSKIALEMLRDINKNTVDYIDNYDASEREPVVLPARFPNLLVNGATGIAVGMATNIPP 189 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E +A ++DNP+ + ++E + GPDFPTG +++ + I +Y G+G +R Sbjct: 190 HNLGESIDAVKLVMDNPDATTRDIMEVLPGPDFPTGALVM-GKSGIHRAYETGKGSIVLR 248 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312 +R +EE+ G IVVTE PY V K+++ E I L+ KRI + +RDES E VR V Sbjct: 249 SRTEIEEMKNGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVRFV 308 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 + + R +++ ++F L+ M+T F NM + G VP+++ L IL ++ H++EV+ Sbjct: 309 IEVR-RDASAHVILNNLFKLTQMQTNFSFNMLAIQNG-VPKILSLREILLAYIEHQKEVV 366 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVD 429 RR+ F + + R IL GLLIA +IDE+I IIRN + + + ++++F L+E Q Sbjct: 367 TRRTVFDKEKAEARAHILAGLLIALDHIDEVIRIIRNSETDAEAQAELMAKFELSERQSQ 426 Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489 AIL++RLR L LE +I+SE D L+A + +L ++ I E+ EVK F+ Sbjct: 427 AILDMRLRRLTGLERDKIQSEYDELIALIADLADILAKPERVIAIIKEELDEVKRKFADD 486 Query: 490 TDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSL--------KSHSVDL 540 RRT E+ + +L+ + +IE+ + + +SN+G+I+ L K + Sbjct: 487 -----RRT---ELMVGEVLSLEDEDLIEEADVLITLSNKGYIKRLNQAEFTAQKRGGRGV 538 Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLLSGRG 585 K+ D +K + T DR+L + G+ Y LP NLL Sbjct: 539 QGTGVKDDDFVKELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLK-LD 597 Query: 586 HGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK-GKTFLKV 644 GE IQ +I++ ++ ++++ +T +V + F AN R+ G L + Sbjct: 598 EGETIQTIINVQQDRSD-DSYLFFTTRHGVVKRTSVTEF--------ANIRQNGLKALNL 648 Query: 645 SSEEKMKLVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSR-GKGVRLQSYKDG 695 E+++ V G ++G + F+ + MSR GVR + +DG Sbjct: 649 KDEDELINVFLTDGAADVIIGTKFGYSVRFNETAVRSMSRIATGVRGVNLRDG 701 >gi|13507743|ref|NP_109692.1| DNA gyrase subunit A [Mycoplasma pneumoniae M129] gi|2507467|sp|P22446|GYRA_MYCPN RecName: Full=DNA gyrase subunit A gi|1673810|gb|AAB95798.1| DNA gyrase subunit A [Mycoplasma pneumoniae M129] Length = 839 Score = 410 bits (1055), Expect = e-112, Method: Compositional matrix adjust. Identities = 246/631 (38%), Positives = 364/631 (57%), Gaps = 42/631 (6%) Query: 12 LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71 L + +K +SL LE ++ YA+S I RA+PD RDG KPVHRR+++ G+ Sbjct: 15 LAQSAIKNISLSSELERSFMEYAMSVIVARALPDARDGLKPVHRRVLYGAYTGGMHHDRP 74 Query: 72 FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131 FKKSARIVG+V+ K HPHGD ++YD++ R+AQ F RY LI G GNFG+IDGD AA RY Sbjct: 75 FKKSARIVGDVMSKFHPHGDMAIYDTMSRMAQDFSLRYLLIDGHGNFGSIDGDRPAAQRY 134 Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191 TEAR++++A +L+ +D+D VDF Y+ E+ EP V P+ FPNLLANG+SGIAVGM+TSI Sbjct: 135 TEARLSKLAGELLRDIDKDTVDFVANYDGEEQEPTVLPAAFPNLLANGSSGIAVGMSTSI 194 Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY-RLGRGGF 250 PSHN+ E+ + + LIDNP+ +I LL I GPDFPTG I+ ++ +ESY G+G Sbjct: 195 PSHNLSELIQGLILLIDNPDCTINDLLGVIKGPDFPTGANIIYTKG--IESYFETGKGNV 252 Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDV 309 +R++ +E++ + +VVTEIPY V K+ LIEKI EL+ A+ I + DIRDES+ E + Sbjct: 253 VIRSKVSIEQLPTRA-ALVVTEIPYMVNKTSLIEKIVELVKAEEITGIADIRDESSREGI 311 Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369 R+V+ K R P++L+ +F + ++ RFP+NM L G P+++ + L +L H+ Sbjct: 312 RLVIEVK-RDTVPEVLLNQLFKSTRLQVRFPVNMLALVKG-APKLLNMKQALTVYLEHQL 369 Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTEN 426 +VL R++ F ++ R IL GLLIA LNIDE+IAII+ + M + RF L E Sbjct: 370 DVLIRKTQFNLKKYQERFHILSGLLIAALNIDEVIAIIKKSANNQVAMEALHERFGLDEI 429 Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486 Q A+L++RLRSL LE ++++E L A E +L + Q I ++ ++ E F Sbjct: 430 QARAVLDMRLRSLSVLEVNKLQTEQQELKALIEFCQQVLADKQLQLKLIKEQLTKINEQF 489 Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546 RR +S + + +I +E + + +S G+ LK VD L + Sbjct: 490 GDP----RRSEILYGIS---EDIDDEDLITQENVVITMSTNGY---LKRIGVDAYNLQHR 539 Query: 547 EG-----------DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL--L 593 G DS+ L T +L + GK Y + A + G + I L Sbjct: 540 GGVGVKGLTTYTDDSISQLLVCSTHSDLLFFTDKGKVYRIRAHQIPPGFRTNKGIPAVNL 599 Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAF 624 I ++ ++ I C L+ V+ N + Sbjct: 600 IKIDKDEKI---------CALISVNDYQNGY 621 >gi|291288762|ref|YP_003505578.1| DNA gyrase, A subunit [Denitrovibrio acetiphilus DSM 12809] gi|290885922|gb|ADD69622.1| DNA gyrase, A subunit [Denitrovibrio acetiphilus DSM 12809] Length = 828 Score = 410 bits (1055), Expect = e-112, Method: Compositional matrix adjust. Identities = 269/756 (35%), Positives = 423/756 (55%), Gaps = 48/756 (6%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 +S+ +++ YL YA+S I RA+PD+RDG KPVHRR + +MSEMG+ + A+KKSARIV Sbjct: 10 ISIEESVKNSYLDYAMSVIIGRALPDVRDGLKPVHRRALFSMSEMGVHYNKAYKKSARIV 69 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGD +VYD++VR+AQ F RYPL+ GQGNFG++DGDSAAA RYTE R++++ Sbjct: 70 GDVIGKFHPHGDSAVYDTIVRMAQDFSLRYPLVDGQGNFGSVDGDSAAAMRYTEIRLSKI 129 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 ++ +L +D+D VDF + Y+ EP V P++ P LL NGTSGIAVGMAT+IP HN+ EI Sbjct: 130 SDDLLADLDKDTVDFSENYDGTMVEPTVLPTRIPALLVNGTSGIAVGMATNIPPHNITEI 189 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 A +ID P E +L ++ GPDFPT GII+ S++ I +YR GRG +RAR +E Sbjct: 190 ISALNYMIDEPGYDTEGILRHVSGPDFPTAGIIMGSKD-IQTAYRTGRGSITIRARVLIE 248 Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKNR 318 E G I+V EIPY V K+ +IEKIA+L+ K+I + D+RDES +D +R+V+ K + Sbjct: 249 ETKTGKPVIIVREIPYLVNKASMIEKIADLVQEKKITGITDLRDESDKDGIRVVIELK-K 307 Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378 + D+++ ++ + ++T F NM + G+ PQ + L IL+E+L HR V+ RR+ F Sbjct: 308 GENVDVVLNRLYKFTQLQTSFGFNMVAIVDGK-PQTLSLREILEEFLKHRVTVVTRRTQF 366 Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDKP--KPVMVSRFSLTENQVDAILNLR 435 ++ + R+ IL+GL+ A NIDE+I I+ ++D P K + ++F TE Q +IL +R Sbjct: 367 LLRKAEARLHILEGLIKAVENIDEVIKTIKASKDTPAAKANLCAQFGFTEIQAQSILEMR 426 Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495 L+ L LE ++K E +N+L + E S+L + + I E+++V + + R Sbjct: 427 LQKLTGLEIEKLKEEYENILKDIEYYKSILGNRSVMMSVIKDELQDVLDKYGDD-----R 481 Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--LKSHSVDLSALHFKEGDSLK- 552 RT E++ + +I V +++ G+I++ L S+ K G K Sbjct: 482 RT---EIAPGLTEFEDEDLIPNNEKVVTMTHNGYIKATLLSSYVAQKRGGKGKTGAGSKD 538 Query: 553 -------IALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDI- 602 I HT R++ + GK + L L + G I L+ L + + Sbjct: 539 EDFVERLIVTTNHT--RLMFFTNTGKVHYLKVYALPEAQRDAKGRHISNLLTLEPEEFVA 596 Query: 603 -VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHV 661 V A ++ K L ++K E + R G +K+ +++ L +T D Sbjct: 597 SVLALPAETDGKYLFFATKSGTIKKTSLEEFKSGRSGIVAIKLRDGDEI-LTADITTDED 655 Query: 662 AVVGENR--KLLIFSIDQIPEMSRG----KGVRLQSYKDGGISDVICFKICEGLTWI--- 712 V+ + K + FS M R +G+ L++ +++ ++ G +I Sbjct: 656 TVILSTKAGKTIQFSSTDARPMGRSTSGVRGITLEAR-----DELMSMEVLTGAPYILSV 710 Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG 748 SAG ++ + RGG G + + P++G Sbjct: 711 TSAGYGKRTPVDEY--RVQTRGGKGLKLCRVSPKTG 744 >gi|165975741|ref|YP_001651334.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|165875842|gb|ABY68890.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 3 str. JL03] Length = 896 Score = 410 bits (1055), Expect = e-112, Method: Compositional matrix adjust. Identities = 240/606 (39%), Positives = 352/606 (58%), Gaps = 55/606 (9%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 +++ VS+ L+ YL YA+S I RA+PD+RDG KPVHRR++ +M + F K Sbjct: 6 KDITPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTFNRPHVK 65 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 SAR+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG+IDGD+ AA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRYTEV 125 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 RM ++ + +L +D++ VD+ Y+ ++ P V P+K P LL NG+SGIAVGMAT+IP H Sbjct: 126 RMQKITQELLTDLDKETVDYSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATNIPPH 185 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 N+ E+ + LA I+N +I IE+L+ +I GPDFPTG II R+ I E+YR GRG VRA Sbjct: 186 NLNEVLDGCLAYIENEQIGIEELMRFIPGPDFPTGAII-NGRKGIEEAYRTGRGKVYVRA 244 Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314 + VE +G IVVTE+PYQV K++LIEKIAEL+ K+I + I+D S + ++ Sbjct: 245 KASVETTEKGREQIVVTELPYQVNKAKLIEKIAELVKDKKIEGISGIQDHSDKKGISIVI 304 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 R ++++ ++ L+ M+ F +NM L G+ P+V+ L I++ ++ HRREV+ R Sbjct: 305 EVKRDAVGEVVLNHLYSLTQMQVTFGINMVALDHGQ-PKVLNLKQIIEAFVKHRREVVTR 363 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN------------------------- 409 R+ F ++ R IL+GL IA NID +I +IRN Sbjct: 364 RTIFELRKARERAHILEGLAIALANIDPVIELIRNSKTADEAREGLLARAWALGNVAPML 423 Query: 410 ----------EDKPKPVMV--SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457 ED P+ + V S++ L+E Q AIL LRL L LE +I E LL E Sbjct: 424 EAAGVDASRPEDLPENLGVRDSQYYLSEAQARAILELRLHRLTGLEHEKIVDEYKALLTE 483 Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517 ++ +L+S ++ I E+ +VK F RRT E++ A + +I + Sbjct: 484 IGELLRILSSAERLMEVIREELEKVKAEFGDE-----RRT---EITAASGDINMEDLIAQ 535 Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569 E + V +S+ G+++ + + SA KE D ++ L A+T D IL S+ Sbjct: 536 EDVVVTLSHAGYVKYQPLSDYEAQRRGGKGKSATKMKENDFIEKLLIANTHDTILCFSSR 595 Query: 570 GKAYTL 575 G+ Y L Sbjct: 596 GRLYQL 601 >gi|238788613|ref|ZP_04632405.1| DNA gyrase subunit A [Yersinia frederiksenii ATCC 33641] gi|238723208|gb|EEQ14856.1| DNA gyrase subunit A [Yersinia frederiksenii ATCC 33641] Length = 884 Score = 410 bits (1054), Expect = e-112, Method: Compositional matrix adjust. Identities = 251/636 (39%), Positives = 372/636 (58%), Gaps = 60/636 (9%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + V++ L+ YL YA+S I RA+PD+RDG KPVHRR+++AM+ +G D+ +KKSA Sbjct: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKPYKKSA 67 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG++DGDSAAA RYTE RM Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRM 127 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 +++A +L +++D VDF Y+ + P V P++ PNLL NG+SGIAVGMAT+IP HN+ Sbjct: 128 SKIAHELLADLEKDTVDFVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ + LA I++ ISIE L+EYI GPDFPT II R I E+YR GRG +RAR Sbjct: 188 SEVIDGCLAYIEDENISIEGLMEYIPGPDFPTAAII-NGRRGIEEAYRTGRGKVYIRARA 246 Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314 VE + G I+V EIPYQV K+RLIEKIAEL+ KR+ + +RDES +D +RIV+ Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K ++ ++++ +++ L+ ++ F +NM LS G+ P+++ L IL ++ HRREV+ R Sbjct: 307 IKRDAVG-EVVLNNLYSLTQLQVTFGINMVALSQGQ-PKLLNLKDILVAFVRHRREVVTR 364 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-------------------------- 408 R+ F ++ R IL+ L IA NID II +IR Sbjct: 365 RTIFELRKARDRAHILEALAIALANIDPIIELIRRAATPAEAKAGLIANPWELGNVASML 424 Query: 409 ---NEDKPKP--------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457 +D +P + ++ LTE Q AIL+LRL+ L LE ++ E LL Sbjct: 425 ERAGDDAARPEWLEAEFGIRDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLTI 484 Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517 ++ +L + ++ I E+ +KE ++ + RRT E++ + +I + Sbjct: 485 IGELIFILENPERLMEVIREELVAIKEQYNDA-----RRT---EITANTSDINIEDLINQ 536 Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569 E + V +S++G+++ + + SA KE D + L A+T D IL S+ Sbjct: 537 EDVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSR 596 Query: 570 GKAYTLPAGNLL-SGRG-HGEAIQLLIDLNHNQDIV 603 G+ Y + L + RG G I L+ L N+ I Sbjct: 597 GRLYWMKVYQLPEASRGARGRPIVNLLPLEPNERIT 632 >gi|238794992|ref|ZP_04638588.1| DNA gyrase subunit A [Yersinia intermedia ATCC 29909] gi|238725695|gb|EEQ17253.1| DNA gyrase subunit A [Yersinia intermedia ATCC 29909] Length = 890 Score = 410 bits (1054), Expect = e-112, Method: Compositional matrix adjust. Identities = 251/635 (39%), Positives = 372/635 (58%), Gaps = 60/635 (9%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + V++ L+ YL YA+S I RA+PD+RDG KPVHRR+++AM+ +G D+ +KKSA Sbjct: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKPYKKSA 67 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG++DGDSAAA RYTE RM Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRM 127 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 +++A +L +++D VDF Y+ + P V P++ PNLL NG+SGIAVGMAT+IP HN+ Sbjct: 128 SKIAHELLADLEKDTVDFVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ + LALI++ I+IE L+E+I GPDFPT II R I E+YR GRG +RAR Sbjct: 188 SEVIDGCLALIEDENITIEGLMEFIPGPDFPTAAII-NGRRGIEEAYRTGRGKVYIRARA 246 Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314 VE + G I+V EIPYQV K+RLIEKIAEL+ KR+ + +RDES +D +RIV+ Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K ++ ++++ +++ L+ ++ F +NM LS G+ P+++ L IL ++ HRREV+ R Sbjct: 307 IKRDAVG-EVVLNNLYSLTQLQVTFGINMVALSQGQ-PKLLNLKDILVAFVRHRREVVTR 364 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-------------------------- 408 R+ F ++ R IL+ L IA NID II +IR Sbjct: 365 RTIFELRKARDRAHILEALAIALANIDPIIELIRRAATPAEAKAGLIANSWELGNVASML 424 Query: 409 ---NEDKPKP--------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457 +D +P + R+ LTE Q AIL+LRL+ L LE ++ E LL Sbjct: 425 ERAGDDAARPEWLEAEYGIRDGRYFLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLTL 484 Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517 ++ +L + + I E+ +KE ++ + RRT E++ + +I + Sbjct: 485 IGELIFILENPDRLMEVIREELVAIKEQYNDA-----RRT---EITANTSDINIEDLINQ 536 Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569 E + V +S++G+++ + + SA KE D + L A+T D IL S+ Sbjct: 537 EDVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSR 596 Query: 570 GKAYTLPAGNLL-SGRG-HGEAIQLLIDLNHNQDI 602 G+ Y + L + RG G I L+ L N+ I Sbjct: 597 GRLYWMKVYQLPEASRGARGRPIVNLLPLEPNERI 631 >gi|169795027|ref|YP_001712820.1| DNA gyrase, subunit A, type II topoisomerase [Acinetobacter baumannii AYE] gi|88758890|emb|CAJ77862.1| DNA gyrase [Acinetobacter baumannii AYE] gi|169147954|emb|CAM85817.1| DNA gyrase, subunit A, type II topoisomerase [Acinetobacter baumannii AYE] Length = 904 Score = 410 bits (1054), Expect = e-112, Method: Compositional matrix adjust. Identities = 268/734 (36%), Positives = 413/734 (56%), Gaps = 76/734 (10%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 ++ +++ L+ YL YA+S I RA+PD+RDG KPVHRR+++AM E+G D+ A+KKSA Sbjct: 6 IRPIAIEDELKHSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMHELGNDYNKAYKKSA 65 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD +VY+++VR+AQ F RY L+ GQGNFG+IDGDSAAA RYTE RM Sbjct: 66 RVVGDVIGKYHPHGDLAVYETIVRMAQDFSLRYLLVDGQGNFGSIDGDSAAAMRYTEVRM 125 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 T++A +L +++D VD+ D Y+ + P V P++ PNLL NG +GIAVGMAT++ HN+ Sbjct: 126 TKLAHELLADLEKDTVDWEDNYDGSERIPEVLPTRVPNLLINGAAGIAVGMATNMAPHNM 185 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ A LA DNP ISIE L+EYI GPDFPTGGII + IV++YR G+G +R ++ Sbjct: 186 TEVVNACLAYADNPNISIEGLMEYITGPDFPTGGIIY-GKSGIVDAYRTGKGRLHIRGKY 244 Query: 257 CVEEVGR-GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLF 314 EE + G IV TEIPYQV K+R+IE+IAEL+ K++ + ++RDES E +RI + Sbjct: 245 HFEEDEKTGRTTIVFTEIPYQVNKARVIERIAELVKEKKLEGISELRDESDKEGMRIAID 304 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K R + ++++ ++F+ + +E F +NM L G+ P++M L I+ ++ HR+EV+ R Sbjct: 305 LK-RGENAEVVVNNLFLNTQLENSFSINMVCLDNGQ-PKLMNLKDIIAAFIRHRQEVVTR 362 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN------------------------- 409 R+ F ++ R IL+GL +A NIDEII I+ Sbjct: 363 RTMFELRKARERGHILEGLTVALANIDEIIETIKTSANPAEARERLLAGEWAGGGVVALL 422 Query: 410 ---------------EDKPKPVMVSR--FSLTENQVDAILNLRLRSLRKLEEYQIKSELD 452 ED +P +S + L+ QV AIL LRL L LE+ ++ +E Sbjct: 423 EKAGAISVRPDEIEGEDPNRPFGLSDSFYRLSPTQVGAILELRLHRLTGLEQDKLHAEYT 482 Query: 453 NLLAEKEKIDSLLNSGKQQWNQIACEIR-EVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511 +L + ++ ++LN +N + IR E+ ++ + D RRT E SR D + Sbjct: 483 EILGQIAELTAILND----FNLLMGVIREELAQVLQQYGDA--RRTEIVE-SRVD--FCR 533 Query: 512 QAMIEKEPITVVISNRGWIRS--LKSHSVDL------SALHFKEGDSLKIALHAHTTDRI 563 + +I +E + + +S G+ ++ L + SA K+ D ++ + A + Sbjct: 534 EDLIPEEQVVLTVSQTGYAKTQPLSDYQAQRRGGRGKSATSMKDDDFIQHLIVASNHATV 593 Query: 564 LLLSTDGKAYTLPAGNL-LSGRG-HGEAIQLLIDLNHNQDIVTAFV----YDSTCKLLVV 617 L + GK Y L + + RG G I L+ L+ + VTA + + + + Sbjct: 594 LCFTNVGKVYRLKVFEVPQASRGAKGRPIVNLLPLDATE-TVTAILPLTEFPENHYVFMA 652 Query: 618 SSKGNAFIVEESEIIANTR-KGKTFLKVSSEEKMKLVVKVTGDHVAVVGENR-KLLIFSI 675 ++ G V E E AN R G ++++ E+ + V G+ ++ N K + F+ Sbjct: 653 TASGTVKRV-ELEQFANIRSNGLRAIELNEEDTLIGVAITDGNQQIMLFSNEGKAIRFAE 711 Query: 676 DQIPEMSR-GKGVR 688 + M R KGVR Sbjct: 712 TDVRAMGRTAKGVR 725 >gi|238753719|ref|ZP_04615080.1| DNA gyrase subunit A [Yersinia ruckeri ATCC 29473] gi|238707955|gb|EEQ00312.1| DNA gyrase subunit A [Yersinia ruckeri ATCC 29473] Length = 889 Score = 410 bits (1054), Expect = e-112, Method: Compositional matrix adjust. Identities = 251/636 (39%), Positives = 373/636 (58%), Gaps = 60/636 (9%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + V++ L+ YL YA+S I RA+PD+RDG KPVHRR++ AM+ +G D+ +KKSA Sbjct: 8 ITPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSA 67 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG++DGDSAAA RYTE RM Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEVRM 127 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 +++A +L +++D VDF Y+ + P V P++ PNLL NG+SGIAVGMAT+IP HN+ Sbjct: 128 SKIAHELLADLEKDTVDFVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ + LA I++ +I+IE L+E+I GPDFPTG II R I E+YR GRG VRAR Sbjct: 188 SEVIDGCLAYIEDEDITIEGLMEHIPGPDFPTGAII-NGRRGIDEAYRTGRGKVYVRARA 246 Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314 VE + G I+V EIPYQV K+RLIEKIAEL+ KR+ + +RDES +D +RIV+ Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K ++ ++++ +++ L+ ++ F +NM LS G+ P+++ L IL ++ HRREV+ R Sbjct: 307 VKRDAVG-EVVLNNLYSLTQLQVTFGINMVALSQGQ-PKLLNLKDILVAFVRHRREVVTR 364 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-------------------------- 408 R+ F ++ R IL+ L IA NID II +IR Sbjct: 365 RTIFELRKARDRAHILEALAIALANIDPIIELIRRAATPAEAKAGLIANPWELGNVASML 424 Query: 409 ---NEDKPKP--------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457 +D +P + ++ LTE Q AIL+LRL+ L LE ++ E LL Sbjct: 425 ERAGDDAARPEWLEPEFGIRDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLTL 484 Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517 ++ +L + ++ I E+ +KE ++ + RRT E++ + +I + Sbjct: 485 IGELIFILENPERLMEVIREELVAIKEQYNDA-----RRT---EITANTSDINIEDLINQ 536 Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569 E + V +S++G+++ + + SA KE D + L A+T D IL S+ Sbjct: 537 EDVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSR 596 Query: 570 GKAYTLPAGNLL-SGRG-HGEAIQLLIDLNHNQDIV 603 G+ Y + L + RG G I L+ L N+ I Sbjct: 597 GRLYWMKVYQLPEASRGARGRPIVNLLPLEPNERIT 632 >gi|115499631|dbj|BAF33489.1| DNA gyrase subunit A [Listonella anguillarum] Length = 907 Score = 410 bits (1054), Expect = e-112, Method: Compositional matrix adjust. Identities = 242/605 (40%), Positives = 360/605 (59%), Gaps = 57/605 (9%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + V++ L YL YA+S I RA+PD+RDG KPVHRR++ AM+ +G D+ +KKSA Sbjct: 8 ITPVNIEDELRGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSA 67 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG+IDGDSAAA RYTE RM Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVRM 127 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 +++A +L +D++ VD+ Y+ + P V P+K PNLL NG+SGIAVGMAT+IP HN+ Sbjct: 128 SKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ E LA I+N +I+I++L++YI GPDFPT +I R+ I+++Y+ GRG +R++ Sbjct: 188 TEVVEGCLAYINNEDITIDELMDYIPGPDFPTAALI-SGRKGIIDAYKTGRGKVYMRSKA 246 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFP 315 +E G I+V EIPYQV K+RLIEKIAEL+ K++ + +RDES +D +RIV+ Sbjct: 247 DIEVEKNGKETIIVREIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDGMRIVIEC 306 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 K ++ ++++ +++ + ++T F +NM L G +P++ L +LK ++ HRREV+ RR Sbjct: 307 KRDAVG-EVVLNNLYAQTQLQTTFGINMVALDNG-LPKLFNLKEMLKCFVDHRREVVTRR 364 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR------------ 420 + F ++ R IL+ L +A NIDEII +IR P K +++R Sbjct: 365 TIFELRKARDRAHILEALALALANIDEIIELIRRAATPAEAKEGLIARGWDLGNVASMLE 424 Query: 421 ----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458 + LTE Q AIL LRL L LE +I E LL E Sbjct: 425 RAGTDAARPEWLEPEYGIRDGKYFLTEQQAQAILELRLHRLTGLEHEKILDEYKALLEEI 484 Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518 ++ +L S ++ I E+ V++ F + RRT E++ A + +I +E Sbjct: 485 AELMHILASTERLMEVIREELETVRDAFGDA-----RRT---EITAATHDIDMEELIARE 536 Query: 519 PITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570 + V +S+ G+++ + + SA KE D ++ L A+T D IL ST G Sbjct: 537 DVAVTLSHAGYVKYQILSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDHILCFSTRG 596 Query: 571 KAYTL 575 K Y L Sbjct: 597 KTYRL 601 >gi|238797460|ref|ZP_04640959.1| DNA gyrase subunit A [Yersinia mollaretii ATCC 43969] gi|238718731|gb|EEQ10548.1| DNA gyrase subunit A [Yersinia mollaretii ATCC 43969] Length = 892 Score = 410 bits (1054), Expect = e-112, Method: Compositional matrix adjust. Identities = 251/635 (39%), Positives = 369/635 (58%), Gaps = 60/635 (9%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + V++ L+ YL YA+S I RA+PD+RDG KPVHRR++ AM+ +G D+ +KKSA Sbjct: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSA 67 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG++DGDSAAA RYTE RM Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRM 127 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 +++A +L +++D VDF Y+ + P V P++ PNLL NG+SGIAVGMAT+IP HN+ Sbjct: 128 SKIAHELLADLEKDTVDFVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ + LA I++ ISIE L+EYI GPDFPT II R I E+YR GRG +RAR Sbjct: 188 SEVIDGCLAYIEDENISIEGLMEYIPGPDFPTAAII-NGRRGIEEAYRTGRGKVYIRARG 246 Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314 VE + G I++ EIPYQV K+RLIEKIAEL+ KR+ + +RDES +D +RIV+ Sbjct: 247 EVEADAKTGRETIIIHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K ++ ++++ +++ L+ ++ F +NM LS G+ P+++ L IL ++ HRREV+ R Sbjct: 307 IKRDAVG-EVVLNNLYSLTQLQVTFGINMVALSQGQ-PKLLNLKDILVAFVRHRREVVTR 364 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK----------------PVMV 418 R+ F ++ R IL+ L IA NID II +IR P M+ Sbjct: 365 RTIFELRKARDRAHILEALAIALANIDPIIELIRRAATPAEAKAGLIASPWELGNVAAML 424 Query: 419 SR---------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457 R + LTE Q AIL+LRL+ L LE ++ E LL Sbjct: 425 ERAGGDAARPEWLEAEFGIRDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLTA 484 Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517 ++ +L + ++ I E+ +KE ++ + RRT E++ + +I + Sbjct: 485 IAELIFILENPERLMEVIREELVAIKEQYNDA-----RRT---EITANTSDINIEDLINQ 536 Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569 E + V +S++G+++ + + SA KE D + L A+T D IL S+ Sbjct: 537 EDVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSR 596 Query: 570 GKAYTLPAGNLL-SGRG-HGEAIQLLIDLNHNQDI 602 G+ Y + L + RG G I L+ L N+ I Sbjct: 597 GRLYWMKVYQLPEASRGARGRPIVNLLPLEPNERI 631 >gi|219853350|ref|YP_002470472.1| DNA gyrase A subunit [Clostridium kluyveri NBRC 12016] gi|219567074|dbj|BAH05058.1| DNA gyrase A subunit [Clostridium kluyveri NBRC 12016] Length = 807 Score = 410 bits (1054), Expect = e-112, Method: Compositional matrix adjust. Identities = 227/574 (39%), Positives = 355/574 (61%), Gaps = 24/574 (4%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 E V + + +++ Y+ YA+S I RA+PD+RDG KPVHRRI+++M E+G+ ++ Sbjct: 5 EGKVLPIDISQEMKKSYIDYAMSVIVSRALPDVRDGLKPVHRRILYSMYELGITPEKGYR 64 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 K ARIVG+V+GK HPHGD SVYD+LVR+AQ F RY L+ G GNFG++DGDSAAA RYTE Sbjct: 65 KCARIVGDVLGKYHPHGDSSVYDALVRMAQDFSIRYTLVDGHGNFGSVDGDSAAAMRYTE 124 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 A+M ++ +L+G++++ VDF ++ E+ EPVV PS+FPNLL NG++GIAVGMAT+IP Sbjct: 125 AKMDKITVEMLRGINKNTVDFIPNFDGEEKEPVVLPSRFPNLLVNGSAGIAVGMATNIPP 184 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E+ + +I+NPE++I +L+ I GPDFPT GIIV + I +Y GRG VR Sbjct: 185 HNLVEVINGVIMIIENPEVTIYELMTSIKGPDFPTAGIIVGT-SGIKSAYETGRGKIIVR 243 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIV 312 A+ ++E +G IV+TEIPYQV KS+LIE +A+L+ KRI + DIRDES D +RIV Sbjct: 244 AKTEIQE-EKGKNRIVITEIPYQVNKSKLIENMADLVKNKRIDGISDIRDESDRDGMRIV 302 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 + K R + ++ + ++ + M+ F + M L + P+V+ L +L +L + E+L Sbjct: 303 VELK-RDANANITLNQLYKHTRMQDTFGVIMLTL-VDNEPKVLNLKQMLVHYLKFQEEIL 360 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVD 429 RR+ F + + R IL+GL IA IDE+I +IR+ + ++ +F+L+E Q Sbjct: 361 TRRTKFELDKAEARAHILEGLRIALDYIDEVINLIRSSKTTEIARNGLIDKFNLSEKQAQ 420 Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489 AIL++RL+ L LE +I++E + L+ + + +L + N I E+ E+++ + Sbjct: 421 AILDMRLQRLTGLEREKIENEYNELMDIIKHLKEILENKSILLNMIKDELIEIRDKY--- 477 Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD--------LS 541 G R T ++S D + +IE+E + + +++ G+I+ + + + + Sbjct: 478 ---GDERRTEIQISNDDINI--EDLIEEEEVVITLTHAGYIKRISADTYSSQRRGGKGIQ 532 Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575 A+ KE D ++ T IL + GK Y L Sbjct: 533 AMTTKEDDFVEHIFITSTHSHILFFTNKGKVYKL 566 >gi|215482575|ref|YP_002324767.1| DNA gyrase, A subunit [Acinetobacter baumannii AB307-0294] gi|301511582|ref|ZP_07236819.1| DNA gyrase, A subunit [Acinetobacter baumannii AB058] gi|332854274|ref|ZP_08435274.1| DNA gyrase, A subunit [Acinetobacter baumannii 6013150] gi|332865651|ref|ZP_08436477.1| DNA gyrase, A subunit [Acinetobacter baumannii 6013113] gi|213986072|gb|ACJ56371.1| DNA gyrase, A subunit [Acinetobacter baumannii AB307-0294] gi|332728090|gb|EGJ59479.1| DNA gyrase, A subunit [Acinetobacter baumannii 6013150] gi|332735172|gb|EGJ66252.1| DNA gyrase, A subunit [Acinetobacter baumannii 6013113] Length = 904 Score = 410 bits (1054), Expect = e-112, Method: Compositional matrix adjust. Identities = 268/734 (36%), Positives = 413/734 (56%), Gaps = 76/734 (10%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 ++ +++ L+ YL YA+S I RA+PD+RDG KPVHRR+++AM E+G D+ A+KKSA Sbjct: 6 IRPIAIEDELKHSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMHELGNDYNKAYKKSA 65 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD +VY+++VR+AQ F RY L+ GQGNFG+IDGDSAAA RYTE RM Sbjct: 66 RVVGDVIGKYHPHGDLAVYETIVRMAQDFSLRYLLVDGQGNFGSIDGDSAAAMRYTEVRM 125 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 T++A +L +++D VD+ D Y+ + P V P++ PNLL NG +GIAVGMAT++ HN+ Sbjct: 126 TKLAHELLADLEKDTVDWEDNYDGSERIPEVLPTRVPNLLINGAAGIAVGMATNMAPHNM 185 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ A LA DNP ISIE L+EYI GPDFPTGGII + IV++YR G+G +R ++ Sbjct: 186 TEVVNACLAYADNPNISIEGLMEYITGPDFPTGGIIY-GKSGIVDAYRTGKGRLHIRGKY 244 Query: 257 CVEEVGR-GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLF 314 EE + G IV TEIPYQV K+R+IE+IAEL+ K++ + ++RDES E +RI + Sbjct: 245 HFEEDEKTGRTTIVFTEIPYQVNKARVIERIAELVKEKKLEGISELRDESDKEGMRIAID 304 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K R + ++++ ++F+ + +E F +NM L G+ P++M L I+ ++ HR+EV+ R Sbjct: 305 LK-RGENAEVVVNNLFLNTQLENSFSINMVCLDNGQ-PKLMNLKDIIAAFIRHRQEVVTR 362 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN------------------------- 409 R+ F ++ R IL+GL +A NIDEII I+ Sbjct: 363 RTMFELRKARERGHILEGLTVALANIDEIIETIKTSANPAEARERLLAGEWAGGGVVALL 422 Query: 410 ---------------EDKPKPVMVSR--FSLTENQVDAILNLRLRSLRKLEEYQIKSELD 452 ED +P +S + L+ QV AIL LRL L LE+ ++ +E Sbjct: 423 EKAGAISVRPDEIEGEDPNRPFGLSDSIYRLSPTQVGAILELRLHRLTGLEQDKLHAEYT 482 Query: 453 NLLAEKEKIDSLLNSGKQQWNQIACEIR-EVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511 +L + ++ ++LN +N + IR E+ ++ + D RRT E SR D + Sbjct: 483 EILGQIAELTAILND----FNLLMGVIREELAQVLQQYGDA--RRTEIVE-SRVD--FCR 533 Query: 512 QAMIEKEPITVVISNRGWIRS--LKSHSVDL------SALHFKEGDSLKIALHAHTTDRI 563 + +I +E + + +S G+ ++ L + SA K+ D ++ + A + Sbjct: 534 EDLIPEEQVVLTVSQTGYAKTQPLSDYQAQRRGGRGKSATSMKDDDFIQHLIVASNHATV 593 Query: 564 LLLSTDGKAYTLPAGNL-LSGRG-HGEAIQLLIDLNHNQDIVTAFV----YDSTCKLLVV 617 L + GK Y L + + RG G I L+ L+ + VTA + + + + Sbjct: 594 LCFTNVGKVYRLKVFEVPQASRGAKGRPIVNLLPLDATE-TVTAILPLTEFPENHYVFMA 652 Query: 618 SSKGNAFIVEESEIIANTR-KGKTFLKVSSEEKMKLVVKVTGDHVAVVGENR-KLLIFSI 675 ++ G V E E AN R G ++++ E+ + V G+ ++ N K + F+ Sbjct: 653 TASGTVKRV-ELEQFANIRSNGLRAIELNEEDTLIGVAITDGNQQIMLFSNEGKAIRFAE 711 Query: 676 DQIPEMSR-GKGVR 688 + M R KGVR Sbjct: 712 TDVRAMGRTAKGVR 725 >gi|184159189|ref|YP_001847528.1| Type IIA topoisomerase [Acinetobacter baumannii ACICU] gi|213158310|ref|YP_002320361.1| DNA gyrase, A subunit [Acinetobacter baumannii AB0057] gi|301345404|ref|ZP_07226145.1| DNA gyrase, A subunit [Acinetobacter baumannii AB056] gi|301594798|ref|ZP_07239806.1| DNA gyrase, A subunit [Acinetobacter baumannii AB059] gi|332876018|ref|ZP_08443804.1| DNA gyrase, A subunit [Acinetobacter baumannii 6014059] gi|183210783|gb|ACC58181.1| Type IIA topoisomerase (DNA gyrase/topo II) [Acinetobacter baumannii ACICU] gi|213057470|gb|ACJ42372.1| DNA gyrase, A subunit [Acinetobacter baumannii AB0057] gi|322509103|gb|ADX04557.1| gyrA [Acinetobacter baumannii 1656-2] gi|323519133|gb|ADX93514.1| Type IIA topoisomerase (DNA gyrase/topo II) [Acinetobacter baumannii TCDC-AB0715] gi|332735884|gb|EGJ66925.1| DNA gyrase, A subunit [Acinetobacter baumannii 6014059] Length = 904 Score = 410 bits (1054), Expect = e-112, Method: Compositional matrix adjust. Identities = 268/734 (36%), Positives = 413/734 (56%), Gaps = 76/734 (10%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 ++ +++ L+ YL YA+S I RA+PD+RDG KPVHRR+++AM E+G D+ A+KKSA Sbjct: 6 IRPIAIEDELKHSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMHELGNDYNKAYKKSA 65 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD +VY+++VR+AQ F RY L+ GQGNFG+IDGDSAAA RYTE RM Sbjct: 66 RVVGDVIGKYHPHGDLAVYETIVRMAQDFSLRYLLVDGQGNFGSIDGDSAAAMRYTEVRM 125 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 T++A +L +++D VD+ D Y+ + P V P++ PNLL NG +GIAVGMAT++ HN+ Sbjct: 126 TKLAHELLADLEKDTVDWEDNYDGSERIPEVLPTRVPNLLINGAAGIAVGMATNMAPHNM 185 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ A LA DNP ISIE L+EYI GPDFPTGGII + IV++YR G+G +R ++ Sbjct: 186 TEVVNACLAYADNPNISIEGLMEYITGPDFPTGGIIY-GKSGIVDAYRTGKGRLHIRGKY 244 Query: 257 CVEEVGR-GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLF 314 EE + G IV TEIPYQV K+R+IE+IAEL+ K++ + ++RDES E +RI + Sbjct: 245 HFEEDEKTGRTTIVFTEIPYQVNKARVIERIAELVKEKKLEGISELRDESDKEGMRIAID 304 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K R + ++++ ++F+ + +E F +NM L G+ P++M L I+ ++ HR+EV+ R Sbjct: 305 LK-RGENAEVVVNNLFLNTQLENSFSINMVCLDNGQ-PKLMNLKDIIAAFIRHRQEVVTR 362 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN------------------------- 409 R+ F ++ R IL+GL +A NIDEII I+ Sbjct: 363 RTMFELRKARERGHILEGLTVALANIDEIIETIKTSANPAEARERLLAGEWAGGGVVALL 422 Query: 410 ---------------EDKPKPVMVSR--FSLTENQVDAILNLRLRSLRKLEEYQIKSELD 452 ED +P +S + L+ QV AIL LRL L LE+ ++ +E Sbjct: 423 EKAGAISVRPDEIEGEDPNRPFGLSDSIYRLSPTQVGAILELRLHRLTGLEQDKLHAEYT 482 Query: 453 NLLAEKEKIDSLLNSGKQQWNQIACEIR-EVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511 +L + ++ ++LN +N + IR E+ ++ + D RRT E SR D + Sbjct: 483 EILGQIAELTAILND----FNLLMGVIREELAQVLQQYGDA--RRTEIVE-SRVD--FCR 533 Query: 512 QAMIEKEPITVVISNRGWIRS--LKSHSVDL------SALHFKEGDSLKIALHAHTTDRI 563 + +I +E + + +S G+ ++ L + SA K+ D ++ + A + Sbjct: 534 EDLIPEEQVVLTVSQTGYAKTQPLSDYQAQRRGGRGKSATSMKDDDFIQHLIVASNHATV 593 Query: 564 LLLSTDGKAYTLPAGNL-LSGRG-HGEAIQLLIDLNHNQDIVTAFV----YDSTCKLLVV 617 L + GK Y L + + RG G I L+ L+ + VTA + + + + Sbjct: 594 LCFTNVGKVYRLKVFEVPQASRGAKGRPIVNLLPLDATE-TVTAILPLTEFPENHYVFMA 652 Query: 618 SSKGNAFIVEESEIIANTR-KGKTFLKVSSEEKMKLVVKVTGDHVAVVGENR-KLLIFSI 675 ++ G V E E AN R G ++++ E+ + V G+ ++ N K + F+ Sbjct: 653 TASGTVKRV-ELEQFANIRSNGLRAIELNEEDTLIGVAITDGNQQIMLFSNEGKAIRFAE 711 Query: 676 DQIPEMSR-GKGVR 688 + M R KGVR Sbjct: 712 TDVRAMGRTAKGVR 725 >gi|153952677|ref|YP_001393442.1| DNA gyrase subunit A [Clostridium kluyveri DSM 555] gi|146345558|gb|EDK32094.1| GyrA1 [Clostridium kluyveri DSM 555] Length = 806 Score = 410 bits (1054), Expect = e-112, Method: Compositional matrix adjust. Identities = 227/574 (39%), Positives = 355/574 (61%), Gaps = 24/574 (4%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 E V + + +++ Y+ YA+S I RA+PD+RDG KPVHRRI+++M E+G+ ++ Sbjct: 4 EGKVLPIDISQEMKKSYIDYAMSVIVSRALPDVRDGLKPVHRRILYSMYELGITPEKGYR 63 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 K ARIVG+V+GK HPHGD SVYD+LVR+AQ F RY L+ G GNFG++DGDSAAA RYTE Sbjct: 64 KCARIVGDVLGKYHPHGDSSVYDALVRMAQDFSIRYTLVDGHGNFGSVDGDSAAAMRYTE 123 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 A+M ++ +L+G++++ VDF ++ E+ EPVV PS+FPNLL NG++GIAVGMAT+IP Sbjct: 124 AKMDKITVEMLRGINKNTVDFIPNFDGEEKEPVVLPSRFPNLLVNGSAGIAVGMATNIPP 183 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E+ + +I+NPE++I +L+ I GPDFPT GIIV + I +Y GRG VR Sbjct: 184 HNLVEVINGVIMIIENPEVTIYELMTSIKGPDFPTAGIIVGT-SGIKSAYETGRGKIIVR 242 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIV 312 A+ ++E +G IV+TEIPYQV KS+LIE +A+L+ KRI + DIRDES D +RIV Sbjct: 243 AKTEIQE-EKGKNRIVITEIPYQVNKSKLIENMADLVKNKRIDGISDIRDESDRDGMRIV 301 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 + K R + ++ + ++ + M+ F + M L + P+V+ L +L +L + E+L Sbjct: 302 VELK-RDANANITLNQLYKHTRMQDTFGVIMLTL-VDNEPKVLNLKQMLVHYLKFQEEIL 359 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVD 429 RR+ F + + R IL+GL IA IDE+I +IR+ + ++ +F+L+E Q Sbjct: 360 TRRTKFELDKAEARAHILEGLRIALDYIDEVINLIRSSKTTEIARNGLIDKFNLSEKQAQ 419 Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489 AIL++RL+ L LE +I++E + L+ + + +L + N I E+ E+++ + Sbjct: 420 AILDMRLQRLTGLEREKIENEYNELMDIIKHLKEILENKSILLNMIKDELIEIRDKY--- 476 Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD--------LS 541 G R T ++S D + +IE+E + + +++ G+I+ + + + + Sbjct: 477 ---GDERRTEIQISNDDINI--EDLIEEEEVVITLTHAGYIKRISADTYSSQRRGGKGIQ 531 Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575 A+ KE D ++ T IL + GK Y L Sbjct: 532 AMTTKEDDFVEHIFITSTHSHILFFTNKGKVYKL 565 >gi|53804242|ref|YP_113878.1| DNA gyrase subunit A [Methylococcus capsulatus str. Bath] gi|53758003|gb|AAU92294.1| DNA gyrase, A subunit [Methylococcus capsulatus str. Bath] Length = 860 Score = 410 bits (1054), Expect = e-112, Method: Compositional matrix adjust. Identities = 269/797 (33%), Positives = 419/797 (52%), Gaps = 67/797 (8%) Query: 11 TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70 T + + V+L +++ YL YA+S I RA+PD RDG KPVHRR+++AM E+G D+ Sbjct: 2 TAFAKEIIPVNLEDEMKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMHELGNDWNK 61 Query: 71 AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130 +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF RY LI GQGNFG++DGD AA R Sbjct: 62 PYKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLIDGQGNFGSVDGDPPAAMR 121 Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190 YTE RM ++A +L +D++ VDF Y++ + EP V P++ PNLL NG++GIAVGMAT+ Sbjct: 122 YTEVRMARIAHDLLADLDKETVDFVPNYDDSEREPSVLPTRIPNLLVNGSAGIAVGMATN 181 Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250 IP HN++E+ +A LALI+NPE ++ L+ ++ GPDFPT GII I E+Y GRG Sbjct: 182 IPPHNLREVVDACLALIENPEAGVQDLMAFVPGPDFPTAGII-NGAAGIREAYLTGRGRI 240 Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310 +RAR E G I+V E+PYQV K+RL+EKIAEL+ ++ + +RDES +D Sbjct: 241 YLRARCQFEGEEGGRQSIIVNELPYQVNKARLLEKIAELVKEGKLEGISALRDESDKDGM 300 Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370 ++ R P++++ +++ + M++ F +NM L GR P++M L ++ ++ HRRE Sbjct: 301 RMVIELRRGEAPEVVLNNLYQQTQMQSVFGINMVALLNGR-PRLMNLRDLIAAFIDHRRE 359 Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR------- 420 V+ RR+ ++ R +L+GL +A NIDE+I +I++ P K +VSR Sbjct: 360 VVTRRTLHELRKARERAHVLEGLAVALANIDEVIELIKSSPSPAEAKERLVSRAWRPGVV 419 Query: 421 ----------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELD 452 + L+ Q AIL+LRL L LE+ +I +E Sbjct: 420 TELLERADAAEASRPRDLDPVYGLREGAYRLSPIQAQAILDLRLHRLTGLEQDKIIAEYR 479 Query: 453 NLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ- 511 LL + + +L + I E+ ++E F RRT AD+ L Sbjct: 480 ALLEQIADLLDILAKDTRLMQVIRDELVAIREQFGDP-----RRTEII----ADRLDLSA 530 Query: 512 QAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRI 563 + +I +E + V +S+ G++ R+ + A KE D ++ + A+T D I Sbjct: 531 EDLITEEDMVVTVSHEGYVKAQPLSDYRAQRRGGRGKQAAATKEEDYIEKLVVANTHDTI 590 Query: 564 LLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVS 618 L S+ GK Y L L S G L+ L + I +D + + + Sbjct: 591 LCFSSSGKVYWLKVYELPVASRTARGRPFVNLLPLEEGERINAILPIREFDEAHFIFMAT 650 Query: 619 SKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQ 677 + G V SE GK +++ ++++ V G+ V + + K++ F Sbjct: 651 ASGTVKKVALSEFERPRPSGKIAIELRDDDRLVDVAITNGEQDVMLFSSDGKVVCFHETD 710 Query: 678 IPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGV 736 + M R GVR + ++G VI I T ++ Y + +RGG Sbjct: 711 VRAMGRTAAGVRGMTLQEG--RKVIALIIASEGTVLNITENGYGKRTRLEEFPRHRRGGQ 768 Query: 737 GSLVPKGFPRSGKFLSS 753 G + + R+G + + Sbjct: 769 GVIAIQTSARNGAVVGA 785 >gi|294155383|ref|YP_003559767.1| DNA gyrase, A subunit [Mycoplasma crocodyli MP145] gi|291600393|gb|ADE19889.1| DNA gyrase, A subunit [Mycoplasma crocodyli MP145] Length = 899 Score = 410 bits (1054), Expect = e-112, Method: Compositional matrix adjust. Identities = 257/713 (36%), Positives = 387/713 (54%), Gaps = 60/713 (8%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 E + V + ++ +L YA+S I RA+PD RDG KPVHRRI++ M E+G+ + + +K Sbjct: 69 EGLSPVRVDNEMKNSFLEYAMSVIVSRALPDARDGLKPVHRRILYDMLELGITYSSQHRK 128 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 SARIVG+V+GK HPHGD SVY+++VRLAQ F RYPL+ G GNFG+IDGDSAAA RYTEA Sbjct: 129 SARIVGDVLGKYHPHGDSSVYEAMVRLAQDFSMRYPLVDGHGNFGSIDGDSAAAMRYTEA 188 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 RM+++A +L G+ +D VDF D Y+ + EPVV PS+FPNLL +G +GIAVGMAT IP H Sbjct: 189 RMSKLASEMLDGIKKDTVDFVDNYDASELEPVVLPSRFPNLLVSGATGIAVGMATEIPPH 248 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 N+ E A +A N EI+ E+L+ +I GPDFPTG I+ + I++ Y G+G VR+ Sbjct: 249 NLSETINATIAFARNNEITTEELMIHIKGPDFPTGATILGVK-GILDMYETGKGKIPVRS 307 Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVL 313 + +EE G I+VTEIPY V+K+ +IEKI EL K + + ++RDES E +RIV+ Sbjct: 308 KTKIEEFANGKSRIIVTEIPYAVKKTTIIEKIVELHKDKVVEGIGELRDESNREGIRIVI 367 Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373 K + +P +L+ +F S ++T N+ L G P+++ L IL +L H+ EV+ Sbjct: 368 DVK-KGFNPHVLLNKLFQKSYLQTNVNANLVALVNGE-PKLLNLKQILNIYLNHQIEVVT 425 Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDA 430 RR F ++ ++ IL GL IA NIDE++ II+ N+ + + +RF+LTE Q A Sbjct: 426 RRLKFDLEKALDKLHILDGLKIAVNNIDEVVQIIKTSANDAIAQERLGTRFNLTEKQTKA 485 Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490 IL++ LR L L ++ E+D L E I S+L S ++ + I E+ +KE + Sbjct: 486 ILDMSLRRLTGLNIEKMNQEIDELNKEISYIRSILESREKLIDLIVDELEIIKEKYGD-- 543 Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK--------SHSVDLSA 542 +RRT E A + + +I I + S +G+++ +K + ++ Sbjct: 544 ---KRRTEIDE--SAISSISDEDLIPVNTIVITTSVKGYVKRMKLDDYNVQNRGGIGVNT 598 Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEA---IQLLIDLNHN 599 + D + L T ++L + G+ Y + A + G + I ++ LN Sbjct: 599 MKTYADDDISTILQTTTHTDLMLFTNLGRVYRIRAHQIPEGSKQSKGTPFINIIPSLNEK 658 Query: 600 Q-----DIVTAFVYDSTCKLLVVSSKG------------------------------NAF 624 + ++ Y L+ V+ G NAF Sbjct: 659 EGEKVVSLLAVETYSDEQYLVTVTENGIIKKTQISQYESIRSNGKYAFKLRENDHLVNAF 718 Query: 625 IVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQ 677 IVE+ I GK +K SS + L G + E +K+L S D+ Sbjct: 719 IVEDGNEILIASNGKNVVKFSSNDLRPLGRSSFGVRGITLAEGKKVLTASSDK 771 >gi|497648|gb|AAA57072.1| DNA gyrase subunit A [Mycoplasma genitalium] Length = 836 Score = 410 bits (1054), Expect = e-112, Method: Compositional matrix adjust. Identities = 265/717 (36%), Positives = 401/717 (55%), Gaps = 65/717 (9%) Query: 4 DNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63 +N+ NS VK++SL LE ++ YA+S I RA+PD RDG KPVHRR+++ Sbjct: 13 ENLDNST------VKSISLANELERSFMEYAMSVIVARALPDARDGLKPVHRRVLYGAYI 66 Query: 64 MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123 G+ FKKSARIVG+V+ K HPHGD ++YD++ R+AQ F RY LI G GNFG+IDG Sbjct: 67 GGMHHDRPFKKSARIVGDVMSKFHPHGDMAIYDTMSRMAQDFSLRYLLIDGHGNFGSIDG 126 Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183 D AA RYTEAR++++A +L+ +D+D VDF Y+ E+ EP V P+ FPNLLANG+SGI Sbjct: 127 DRPAAQRYTEARLSKLAAELLKDIDKDTVDFIANYDGEEKEPTVLPAAFPNLLANGSSGI 186 Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243 AVGM+TSIPSHN+ E+ + LIDNP+ + ++LL I GPDFPTG I+ ++ +ESY Sbjct: 187 AVGMSTSIPSHNLSELIAGLIMLIDNPQCTFQELLTVIKGPDFPTGANIIYTKG--IESY 244 Query: 244 -RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302 G+G +R++ +E++ S +VVTEIPY V K+ LIEKI EL+ A+ I + DIR Sbjct: 245 FETGKGNVVIRSKVEIEQLQTRS-ALVVTEIPYMVNKTTLIEKIVELVKAEEISGIADIR 303 Query: 303 DESA-EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361 DES+ E +R+V+ K R P++L+ +F + ++ RFP+NM L G P ++ + L Sbjct: 304 DESSREGIRLVIEVK-RDTVPEVLLNQLFKSTRLQVRFPVNMLALVKG-APVLLNMKQAL 361 Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMV 418 + +L H+ +VL R++ F + R IL GLLIA LNIDE++AII+ N + + Sbjct: 362 EVYLDHQIDVLVRKTKFVLNKQQERYHILSGLLIAALNIDEVVAIIKKSANNQEAINTLN 421 Query: 419 SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE 478 ++F L E Q A+L++RLRSL LE ++++E L E +L K Q I E Sbjct: 422 TKFKLDEIQAKAVLDMRLRSLSVLEVNKLQTEQKELKDSIEFCKKVLADQKLQLKIIKEE 481 Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV 538 ++++ + F RR ++S + +++I+ E + + +S G+ LK V Sbjct: 482 LQKINDQFGDE----RRSEILYDIS---EEIDDESLIKVENVVITMSTNGY---LKRIGV 531 Query: 539 DLSALHFKEG-----------DSLKIALHAHTTDRILLLSTDGKAYT------------- 574 D L + G DS+ L T +L + GK Y Sbjct: 532 DAYNLQHRGGVGVKGLTTYVDDSISQLLVCSTHSDLLFFTDKGKVYRIRAHQIPYGFRTN 591 Query: 575 --LPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEII 632 +PA NL+ E I L+ +N+ D + + T +V + N FI I+ Sbjct: 592 KGIPAVNLIKIE-KDERICSLLSVNNYDD---GYFFFCTKNGIVKRTSLNEFI----NIL 643 Query: 633 ANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSR-GKGV 687 +N GK + + + V+K G+ +G ++ F +Q+ +SR +GV Sbjct: 644 SN---GKLAISFDDNDTLYSVIKTHGNDEIFIGSTNGFVVRFHENQLRVLSRTARGV 697 >gi|12044854|ref|NP_072664.1| DNA gyrase subunit A [Mycoplasma genitalium G37] gi|255660023|ref|ZP_05405432.1| DNA gyrase subunit A [Mycoplasma genitalium G37] gi|1346233|sp|P47250|GYRA_MYCGE RecName: Full=DNA gyrase subunit A gi|1045672|gb|AAC71220.1| DNA gyrase, A subunit [Mycoplasma genitalium G37] gi|166078797|gb|ABY79415.1| DNA gyrase, A subunit [synthetic Mycoplasma genitalium JCVI-1.0] Length = 836 Score = 410 bits (1054), Expect = e-112, Method: Compositional matrix adjust. Identities = 264/717 (36%), Positives = 402/717 (56%), Gaps = 65/717 (9%) Query: 4 DNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63 +N+ NS VK++SL LE ++ YA+S I RA+PD RDG KPVHRR+++ Sbjct: 13 ENLDNST------VKSISLANELERSFMEYAMSVIVARALPDARDGLKPVHRRVLYGAYI 66 Query: 64 MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123 G+ FKKSARIVG+V+ K HPHGD ++YD++ R+AQ F RY LI G GNFG+IDG Sbjct: 67 GGMHHDRPFKKSARIVGDVMSKFHPHGDMAIYDTMSRMAQDFSLRYLLIDGHGNFGSIDG 126 Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183 D AA RYTEAR++++A +L+ +D+D VDF Y+ E+ EP V P+ FPNLLANG+SGI Sbjct: 127 DRPAAQRYTEARLSKLAAELLKDIDKDTVDFIANYDGEEKEPTVLPAAFPNLLANGSSGI 186 Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243 AVGM+TSIPSHN+ E+ + LIDNP+ + ++LL I GPDFPTG I+ ++ +ESY Sbjct: 187 AVGMSTSIPSHNLSELIAGLIMLIDNPQCTFQELLTVIKGPDFPTGANIIYTKG--IESY 244 Query: 244 -RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302 G+G +R++ +E++ S +VVTEIPY V K+ LIEKI EL+ A+ I + DIR Sbjct: 245 FETGKGNVVIRSKVEIEQLQTRS-ALVVTEIPYMVNKTTLIEKIVELVKAEEISGIADIR 303 Query: 303 DESA-EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361 DES+ E +R+V+ K R P++L+ +F + ++ RFP+NM L G P ++ + L Sbjct: 304 DESSREGIRLVIEVK-RDTVPEVLLNQLFKSTRLQVRFPVNMLALVKG-APVLLNMKQAL 361 Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMV 418 + +L H+ +VL R++ F + R IL GLLIA LNIDE++AII+ N + + Sbjct: 362 EVYLDHQIDVLVRKTKFVLNKQQERYHILSGLLIAALNIDEVVAIIKKSANNQEAINTLN 421 Query: 419 SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE 478 ++F L E Q A+L++RLRSL LE ++++E L E +L K Q I E Sbjct: 422 TKFKLDEIQAKAVLDMRLRSLSVLEVNKLQTEQKELKDSIEFCKKVLADQKLQLKIIKEE 481 Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV 538 ++++ + F RR ++S + +++I+ E + + +S G+ LK V Sbjct: 482 LQKINDQFGDE----RRSEILYDIS---EEIDDESLIKVENVVITMSTNGY---LKRIGV 531 Query: 539 DLSALHFKEG-----------DSLKIALHAHTTDRILLLSTDGKAYT------------- 574 D L + G DS+ L T +L + GK Y Sbjct: 532 DAYNLQHRGGVGVKGLTTYVDDSISQLLVCSTHSDLLFFTDKGKVYRIRAHQIPYGFRTN 591 Query: 575 --LPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEII 632 +PA NL+ E I L+ +N+ D + + T +V + N FI I+ Sbjct: 592 KGIPAVNLIKIE-KDERICSLLSVNNYDD---GYFFFCTKNGIVKRTSLNEFI----NIL 643 Query: 633 ANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSR-GKGV 687 +N ++ +F + + V+K G+ +G ++ F +Q+ +SR +GV Sbjct: 644 SNGKRAISF---DDNDTLYSVIKTHGNDEIFIGSTNGFVVRFHENQLRVLSRTARGV 697 >gi|312143599|ref|YP_003995045.1| DNA gyrase, A subunit [Halanaerobium sp. 'sapolanicus'] gi|311904250|gb|ADQ14691.1| DNA gyrase, A subunit [Halanaerobium sp. 'sapolanicus'] Length = 793 Score = 410 bits (1054), Expect = e-112, Method: Compositional matrix adjust. Identities = 231/578 (39%), Positives = 358/578 (61%), Gaps = 19/578 (3%) Query: 13 VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72 + E + +++ +++ YL Y+LS I RA+PD+RDG KPVHRRI++A E+GL A Sbjct: 1 MSEEIYPIAIEDKMKDAYLNYSLSVIVGRALPDVRDGLKPVHRRILYAARELGLLHNKAH 60 Query: 73 KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132 KKSAR+VGEV+GK HPHGD +VYD+LVR+AQ F QRY LI G GNFG+IDGDSAAA RYT Sbjct: 61 KKSARLVGEVLGKFHPHGDSAVYDALVRMAQDFNQRYQLIDGHGNFGSIDGDSAAAMRYT 120 Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192 E ++T+VAE +L+ +DE+ V FRD ++ EP V PSK PNLL NG+SGIAVGM+TSIP Sbjct: 121 ETKLTEVAESLLENIDEETVKFRDNFDGTLQEPEVLPSKIPNLLINGSSGIAVGMSTSIP 180 Query: 193 SHNVQEICEAALALIDNPEISIEKLLE-YIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251 HN+ E+ +A L L++ P ++ +++ ++ GPDFPTG IV E I +Y G+G Sbjct: 181 PHNLAEVIDAVLHLLEYPNARLDTIIKNHLPGPDFPTGASIV-GNEGIKSAYENGKGKII 239 Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VR 310 +RA+ +E+ GR I++TEIPYQ+ KS+LIE+IAEL+ ++ + D+RDES +D +R Sbjct: 240 LRAKSKIEKEGR-HKNIIITEIPYQLNKSKLIEEIAELVNKSKLTSVSDLRDESDKDGIR 298 Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370 I++ K+ + DP+L + ++ + M++ F +N+ L + P+VM L IL ++ R+E Sbjct: 299 ILIALKSGA-DPELTLNRLYKYTSMQSSFRINLLALD-NKKPKVMGLLEILNHFIEFRKE 356 Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQ 427 V+ + + + + R IL+GL IA +D +I IIRN + + K +V + +++E Q Sbjct: 357 VIKNHTKYNLNKSENRFHILEGLKIAINKLDLVIQIIRNSNEKSEAKAKLVEQLNISEVQ 416 Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487 +IL ++L+ L +E ++++E L A+ ++ +L K + E++E+K+ F+ Sbjct: 417 AQSILQMQLQRLVGMEIEKLEAEKTELAAKIKEYKKILTEEKTLKEYLKNELKEMKDKFA 476 Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKE 547 +RRTT E + Q + EKE + V +S RG I+ + + S L + Sbjct: 477 -----DKRRTTIIEDDEKAEINKQDLIKEKEAV-VSLSYRGIIK----RNEEYSNLRAAK 526 Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRG 585 D L + + D++L S G+ Y L L G Sbjct: 527 NDYLISTVKGSSLDQLLFFSDHGEVYNLQVHELEEHHG 564 >gi|163783052|ref|ZP_02178047.1| DNA gyrase A subunit [Hydrogenivirga sp. 128-5-R1-1] gi|159881732|gb|EDP75241.1| DNA gyrase A subunit [Hydrogenivirga sp. 128-5-R1-1] Length = 781 Score = 410 bits (1054), Expect = e-112, Method: Compositional matrix adjust. Identities = 240/584 (41%), Positives = 359/584 (61%), Gaps = 42/584 (7%) Query: 26 LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85 +++ Y+ YA+S I RAIPD+RDG KPV RRI++AM EMGL FKKSAR+VGEV+GK Sbjct: 12 VKQSYIDYAMSVIVGRAIPDVRDGLKPVQRRILYAMYEMGLMPEKPFKKSARVVGEVLGK 71 Query: 86 LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145 HPHGDQ+VYD+LVR+AQ F RYPLI GQGN+G++DGD A RYTEA++++VA +L+ Sbjct: 72 FHPHGDQAVYDALVRMAQDFSMRYPLIIGQGNYGSVDGDPPAQMRYTEAKLSKVAVELLE 131 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 +D+D VDF ++E EP V PSKFPNLL NGT+GIAVG+ATSIP HN++E+ +A + Sbjct: 132 DIDKDTVDFIPNFDESLMEPAVLPSKFPNLLCNGTAGIAVGLATSIPPHNLREVGKALVE 191 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265 L NP +S E++LE + GPDFPTGG+I E+ + I E Y GRG +V+A+ VE+V G Sbjct: 192 LAKNPNMSTEEILEIVKGPDFPTGGVI-ENYKDIKEIYETGRGIVQVKAKAHVEKVQGGR 250 Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKNRSLDPDL 324 I+V+EIPYQV K+ LI+KIA+ + + R+ + DIRDES +D +RIV+ K R + Sbjct: 251 EQIIVSEIPYQVNKAELIKKIADNVRSGRLKEISDIRDESDKDGIRIVIELK-REAKGEK 309 Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384 +++ +F + + FP+N+ VL G P+++ + +L+E++ HR ++ RR+ F ++ + Sbjct: 310 VLKKLFKYTQLRKGFPVNLVVLINGE-PKLVGIKELLREFIKHRLSIILRRTRFFLKKAE 368 Query: 385 RRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAILNLRLRSLRK 441 R+ +++GLLIA N+DE+I IR + + ++ +RF LTE Q A+L+LRL L Sbjct: 369 DRLHVVQGLLIALNNLDEVIEGIRRSKDVQEAREMLQARFGLTERQAQAVLDLRLHRLTS 428 Query: 442 LEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTF-- 499 LE +++ E +LL + E ++ S + +I + E + + K G R TF Sbjct: 429 LERDKLRQEEADLLQKIEYYRKVVGS---EEERIKIFVEETENLVKK---FGDPRRTFIE 482 Query: 500 ------------CEVSRADKATLQQAMIEKE---------PIT---VVISNRGWIRSLK- 534 V K + M E E P T ++SNRG + L Sbjct: 483 GIEEKIEEGSLVVAVLENGKVMPVENMPEGESPVVDILDVPFTEGLFLVSNRGRVYWLAG 542 Query: 535 SHSVDLSALHFKEGDSLKIA--LHAHTTDRILLLSTDGKAYTLP 576 S ++ S ++FKE + + + DR+LL + +G +P Sbjct: 543 SQALQGSKVNFKESEEYIVGAFIRERFADRLLLATRNGMIKKIP 586 >gi|227356091|ref|ZP_03840481.1| DNA gyrase subunit A [Proteus mirabilis ATCC 29906] gi|227163736|gb|EEI48648.1| DNA gyrase subunit A [Proteus mirabilis ATCC 29906] Length = 883 Score = 410 bits (1053), Expect = e-112, Method: Compositional matrix adjust. Identities = 249/647 (38%), Positives = 377/647 (58%), Gaps = 61/647 (9%) Query: 7 SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66 S S + + + V++ L+ YL YA+S I RA+PD+RDG KPVHRR++ AM+ +G Sbjct: 4 SGSMSDIAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGN 63 Query: 67 DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126 D+ +KKSAR+VG+VIGK HPHGD +VY+++VRLAQPF RY L+ GQGNFG++DGDSA Sbjct: 64 DWNKPYKKSARVVGDVIGKYHPHGDSAVYETIVRLAQPFSMRYMLVDGQGNFGSVDGDSA 123 Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186 AA RYTE RM ++A +L ++++ VDF Y+ ++ P V P++ PNLL NG+SGIAVG Sbjct: 124 AAMRYTEVRMAKIAHELLADLEKETVDFVPNYDGTENIPAVMPTRIPNLLVNGSSGIAVG 183 Query: 187 MATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLG 246 MAT+IP HN+ E+ + LA +DN +I+IE+L+EYI GPDFPT II R I+++YR G Sbjct: 184 MATNIPPHNLGEVIDGCLAYVDNEDITIEELMEYITGPDFPTAAII-NGRRGILDAYRTG 242 Query: 247 RGGFRVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305 RG +RA+ +E + G I+VTEIPYQV K+RLIEKIAEL+ KRI + +RDES Sbjct: 243 RGKIYIRAQADIETDEKTGRETIIVTEIPYQVNKARLIEKIAELVKDKRIEGISGLRDES 302 Query: 306 AED-VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364 +D +RIV+ K ++ ++++ +F + M+ F +NM L G+ P+++ L I+ + Sbjct: 303 DKDGMRIVVEIKRDAVG-EVVLNHLFSQTQMQVSFGINMVALHQGQ-PKLLNLKEIIAAF 360 Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVS-- 419 + HRREV+ RR+ F ++ R IL+ L +A NID +I +IR P K +++ Sbjct: 361 IRHRREVVTRRTIFELRKARDRAHILEALAVALANIDPVIELIRQAPTPAEAKAALIAQP 420 Query: 420 ---------------------------------RFSLTENQVDAILNLRLRSLRKLEEYQ 446 ++ LTE Q AIL+LRL+ L LE + Sbjct: 421 WDLGSVSAMLERAGDSNVARPEWLEPQFGVHDGKYYLTEQQAQAILDLRLQKLTGLEHEK 480 Query: 447 IKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRAD 506 + E LL + ++ +L S ++ + I E+ +K ++ RRT E + AD Sbjct: 481 LLDEYRELLLQIAELLHILRSPERLMDVIREELTAIKTQYNDP-----RRTEITE-NTAD 534 Query: 507 KATLQQAMIEKEPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAH 558 + +I +E + V +S++G+++ + + SA KE D + L A+ Sbjct: 535 INI--EDLINEENVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVAN 592 Query: 559 TTDRILLLSTDGKAYTLPAGNLL-SGRG-HGEAIQLLIDLNHNQDIV 603 T D IL S+ G+ Y + L + RG G I L+ L ++ I Sbjct: 593 THDTILCFSSRGRLYWMKVYQLPEASRGARGRPIINLLPLEQDERIT 639 >gi|152996872|ref|YP_001341707.1| DNA gyrase subunit A [Marinomonas sp. MWYL1] gi|150837796|gb|ABR71772.1| DNA gyrase, A subunit [Marinomonas sp. MWYL1] Length = 896 Score = 410 bits (1053), Expect = e-112, Method: Compositional matrix adjust. Identities = 249/638 (39%), Positives = 371/638 (58%), Gaps = 72/638 (11%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 VS+ L+ YL YA+S I RA+PD+RDG KPVHRR++ AM+E+ D+ +KKSARIV Sbjct: 11 VSIENELKGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELKNDWNKPYKKSARIV 70 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG++DGDSAAA RYTE RM ++ Sbjct: 71 GDVIGKYHPHGDSAVYDTIVRMAQPFSMRYTLVDGQGNFGSVDGDSAAAMRYTEIRMAKI 130 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 + +L ++++ VDF Y+ + P V P++ P LL NG++GIAVGMAT+IP HN+ EI Sbjct: 131 SHHLLMDLEKETVDFVPNYDGTEFMPEVLPARVPGLLVNGSAGIAVGMATNIPPHNLGEI 190 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 + LA+IDN +I+I++L+++I GPDFPTG I R I+E+Y+ GRG +RAR E Sbjct: 191 IDGCLAVIDNADITIDELIDHIPGPDFPTGAFI-NGRAGIIEAYKTGRGRIYMRARHHFE 249 Query: 260 EVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318 ++ +G+ IV TEIPYQ+ K+++IEKIAEL+ K++ + ++RDES +D ++ R Sbjct: 250 DMEKGNRQSIVFTEIPYQLNKAKVIEKIAELVKEKKLEGISELRDESDKDGMRIVIELRR 309 Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378 +PD+++ +IF + +++ F +NM L GR PQ++ + IL+ ++ HRREV+ RR+ F Sbjct: 310 GENPDVVVNNIFTQTQLQSVFGINMVALVDGR-PQLLNIKQILECFVKHRREVVTRRTIF 368 Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRN-----EDKPKPV-----------MVSR-- 420 ++ R IL+GL ++ NID +I +IR E K K V M+ R Sbjct: 369 ELRKARERGHILEGLAVSLANIDRVIELIRTSPTSAEAKEKIVSESWEPGDVVAMLERAG 428 Query: 421 -------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKI 461 + L+ +Q AIL+LRL L LE ++ E L+ ++ Sbjct: 429 ADACRPDDLEAGYGFVDGAYHLSPDQAQAILDLRLHRLTGLEHDKLLGEYKTLIELIGEL 488 Query: 462 DSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPIT 521 ++L++ + I E++EVKE F G R T SR D +I++ P+ Sbjct: 489 LNILSNPDRLMEVIREELQEVKETF------GDARRTEILTSRQDLTIAD--LIDEAPMV 540 Query: 522 VVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573 V ISN G+ +S + S+ K+ D ++ L + D I+L S GK Y Sbjct: 541 VTISNTGYAKSQPLVEYQAQRRGGRGKSSASMKDEDHIEHLLVTSSHDTIMLFSNFGKVY 600 Query: 574 TL---------------PAGNLLSGRGHGEAIQLLIDL 596 L P NLL R GE+I L+ L Sbjct: 601 WLRVFEIPVASRSAKGRPIVNLLPLR-EGESISALLPL 637 >gi|319939082|ref|ZP_08013446.1| DNA gyrase subunit A [Streptococcus anginosus 1_2_62CV] gi|319812132|gb|EFW08398.1| DNA gyrase subunit A [Streptococcus anginosus 1_2_62CV] Length = 815 Score = 410 bits (1053), Expect = e-112, Method: Compositional matrix adjust. Identities = 251/706 (35%), Positives = 401/706 (56%), Gaps = 52/706 (7%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 + N+ V+L ++ ++ YA+S I RA+PD+RDG KPVHRRI++ M+E+G+ K Sbjct: 3 DNNLVNVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHK 62 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSARI G+V+GK HPHGD S+Y+++VR+AQ + R+ L+ G GNFG++DGD AA RYTE Sbjct: 63 KSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGPAAQRYTE 122 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 ARM++++ +L+ ++++ VDF D Y+ + EP+V PS+FPNLL NG +GIAVGMAT+IP Sbjct: 123 ARMSKISLEMLRDINKNTVDFADNYDSSEREPLVLPSRFPNLLVNGATGIAVGMATNIPP 182 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E +A ++DNP+++ L+E + GPDFPTG +++ + I +Y G+G +R Sbjct: 183 HNLGETIDAVKLVMDNPDVTTRDLMEVLPGPDFPTGALVM-GKSGIHRAYETGKGSIVLR 241 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312 AR +EE G IVVTE PY V K+++ E I L+ KRI + +RDES E VR + Sbjct: 242 ARTEIEETKSGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVRFI 301 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 + K R +++ ++F L+ M+T F NM + G VP+++ L IL ++ H++EV+ Sbjct: 302 IEVK-RDASAHVILNNLFKLTQMQTNFSFNMLAIQNG-VPKILSLREILLAYIEHQKEVV 359 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVD 429 RR+ F + + R IL GLLIA +IDE+I IIRN + + + +++R+ L+E Q Sbjct: 360 TRRTVFDKEKAEARAHILAGLLIALDHIDEVIRIIRNSETDAEAQAELMARYKLSERQSQ 419 Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489 AIL++RLR L LE +I+SE D+L+ + +L ++ I E+ E+K FS Sbjct: 420 AILDMRLRRLTGLERDKIQSEYDDLMKLIADLADILAKPERVVAIIKEELEEIKRKFSDE 479 Query: 490 TDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSLKSHSVD--------L 540 RRT E+ + +L+ + +IE+ + + +SN+G+I+ L + Sbjct: 480 -----RRT---ELMVGEVLSLEDEDLIEETDVLITLSNKGYIKRLNQDEFTAQRRGGRGI 531 Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLLSGRG 585 K+ D ++ + T D +L + G+ Y LP NLL Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPIVNLLK-LD 590 Query: 586 HGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK-GKTFLKV 644 GE IQ +I++ D ++++ +T +V + F AN R+ G L + Sbjct: 591 EGETIQTIINVQAEHDD-NSYLFFTTRYGVVKRTSVTEF--------ANIRQNGLKALNL 641 Query: 645 SSEEKMKLVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSR-GKGVR 688 E+++ V G ++G + F+ Q+ M R GVR Sbjct: 642 KDEDELINVFLTNGQADIIIGTKMGYAVRFNESQVRNMGRAATGVR 687 >gi|325577977|ref|ZP_08148171.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Haemophilus parainfluenzae ATCC 33392] gi|325160210|gb|EGC72338.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Haemophilus parainfluenzae ATCC 33392] Length = 881 Score = 410 bits (1053), Expect = e-112, Method: Compositional matrix adjust. Identities = 250/659 (37%), Positives = 381/659 (57%), Gaps = 64/659 (9%) Query: 13 VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72 + ++ V++ L+ YL YA+S I RA+PD+RDG KPVHRR++ +M + G+ G + Sbjct: 5 IHSSITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQSGITAGKKY 64 Query: 73 KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132 KSAR+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG+IDGD+ AA RYT Sbjct: 65 VKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRYT 124 Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192 E RM ++ + +L +D++ V+F Y+ E P V P++ P LLANG+SGIAVGMAT+IP Sbjct: 125 EVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPALLANGSSGIAVGMATNIP 184 Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252 HN+ E+ + LA IDN I+I++L++YI GPDFPT +I R+ I E+YR GRG V Sbjct: 185 PHNLNEVLDGCLAYIDNENITIDELMQYIPGPDFPTAALI-NGRKGIEEAYRTGRGKVYV 243 Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRI 311 RAR VE +G I+VTE+PYQV K++L+EKIAELI K+I + +I D S E +RI Sbjct: 244 RARASVETTDKGKEQIIVTELPYQVNKAKLVEKIAELIKDKKIEGISNIIDLSNKEGIRI 303 Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371 + K R ++++ ++ L+ M+ F +NM L G+ P++ L I++ ++ HRREV Sbjct: 304 EIDIK-RDAVGEVVLNHLYALTQMQVTFGINMVALDHGQ-PRLFNLKQIIEAFVMHRREV 361 Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSR-------- 420 + RRS F ++ R IL+GL +A NIDE+I IIR + K ++SR Sbjct: 362 VIRRSLFELRKARERTHILEGLAVATSNIDEVIDIIRQSKERKEAAEKLISRPWKLNNEI 421 Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457 + L+ QVDAIL LRL L L ++ +E LL + Sbjct: 422 LGLLDAAARPAELAAEFGIKGSDYYLSPEQVDAILELRLHRLTGLATEEVINEYKELLVK 481 Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517 ++ ++NS ++ I E+ +V+ F+ RRT E++ A + +I + Sbjct: 482 IAELLHIINSPERLMEVIREELEQVRAQFADE-----RRT---EITAASGDIDLEDLIAQ 533 Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569 E + V +S+ G+++ + + SA K+ D ++ L A+T D IL S+ Sbjct: 534 EDVVVTLSHEGYVKYQPLTDYEAQRRGGKGKSATKMKDEDFIEKLLVANTHDTILCFSSR 593 Query: 570 GKAYTLPAGNL-LSGRG-HGEAIQLLIDLNHNQDI-----VTAFVYDSTCKLLVVSSKG 621 G+ Y L L + RG G I ++ L N+ I ++A+ D K +++++ G Sbjct: 594 GRLYWLKVYQLPQASRGARGRPIVNILPLQENERITAILPISAYEED---KFVIMATAG 649 >gi|324994501|gb|EGC26414.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus sanguinis SK678] Length = 826 Score = 410 bits (1053), Expect = e-112, Method: Compositional matrix adjust. Identities = 255/713 (35%), Positives = 409/713 (57%), Gaps = 52/713 (7%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 + N+ V+L ++ ++ YA+S I RA+PD+RDG KPVHRRI++ M+E+G+ K Sbjct: 10 DRNLVNVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPEKPHK 69 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSARI G+V+GK HPHGD S+Y+++VR+AQ + RY L+ G GNFG++DGD AAA RYTE Sbjct: 70 KSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYTE 129 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 ARM+++A +L+ ++++ VD+ D Y+ + EPVV P++FPNLL NG +GIAVGMAT+IP Sbjct: 130 ARMSKIALEMLRDINKNTVDYIDNYDASEREPVVLPARFPNLLVNGATGIAVGMATNIPP 189 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E +A ++DNP+ + ++E + GPDFPTG +++ + I +Y G+G +R Sbjct: 190 HNLGESIDAVKLVMDNPDATTRDIMEVLPGPDFPTGALVM-GKSGIHRAYETGKGSIVLR 248 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312 +R +EE+ G IVVTE PY V K+++ E I L+ KRI + +RDES E VR V Sbjct: 249 SRTEIEEMKNGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIDGITAVRDESNREGVRFV 308 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 + + R +++ ++F L+ M+T F NM + G VP+++ L IL ++ H++EV+ Sbjct: 309 IEVR-RDASAHVILNNLFKLTQMQTNFSFNMLAIQNG-VPKILSLREILLAYIEHQKEVV 366 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVD 429 RR+ F + + R IL GLLIA +IDE+I IIRN + + + ++++F L+E Q Sbjct: 367 TRRTVFDKEKAEARAHILAGLLIALDHIDEVIRIIRNSETDAEAQAELMAKFELSERQSQ 426 Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489 AIL++RLR L LE +I+SE D L+A + +L ++ I E+ E+K F+ Sbjct: 427 AILDMRLRRLTGLERDKIQSEYDELIALIADLADILAKPERVIAIIKEELDEIKRKFADD 486 Query: 490 TDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSL--------KSHSVDL 540 RRT E+ + +L+ + +IE+ + + +SN+G+I+ L K + Sbjct: 487 -----RRT---ELMVGEVLSLEDEDLIEEADVLITLSNKGYIKRLNQAEFTAQKRGGRGV 538 Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLLSGRG 585 K+ D +K + T DR+L + G+ Y LP NLL Sbjct: 539 QGTGVKDDDFVKELVSTSTHDRLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLK-LD 597 Query: 586 HGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK-GKTFLKV 644 GE IQ +I++ ++ ++++ +T +V + F AN R+ G L + Sbjct: 598 EGETIQTIINVQQDRSD-DSYLFFTTRHGVVKRTSVTEF--------ANIRQNGLKALNL 648 Query: 645 SSEEKMKLVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSR-GKGVRLQSYKDG 695 E+++ V G ++G + F+ + MSR GVR + +DG Sbjct: 649 KDEDELINVFLTDGAADVIIGTKFGYSVRFNETAVRSMSRIATGVRGVNLRDG 701 >gi|212635285|ref|YP_002311810.1| DNA gyrase subunit A [Shewanella piezotolerans WP3] gi|212556769|gb|ACJ29223.1| DNA gyrase, subunit A [Shewanella piezotolerans WP3] Length = 897 Score = 410 bits (1053), Expect = e-112, Method: Compositional matrix adjust. Identities = 251/635 (39%), Positives = 369/635 (58%), Gaps = 59/635 (9%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 ++ +++ L+ YL YA+S I RA+PD+RDG KPVHRR++ AM+E+ D+ +KKS Sbjct: 7 SITPINIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELKNDWNKPYKKS 66 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 AR+VG+VIGK HPHGD +VYD++VRLAQPF RYPLI GQGNFG++DGD+AAA RYTE R Sbjct: 67 ARVVGDVIGKYHPHGDTAVYDTIVRLAQPFSMRYPLIDGQGNFGSVDGDAAAAMRYTEIR 126 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 M +VA +L ++++ VDF Y+ + P V P++ P LL NG+SGIAVGMAT+IP HN Sbjct: 127 MDKVAHQLLADLEKETVDFVPNYDGTEFIPAVLPTRIPTLLVNGSSGIAVGMATNIPPHN 186 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 + E+ LALI++P +SIE+L+E+I GPDFPT IV R+ I+++Y+ GRG +RAR Sbjct: 187 LTEVIAGCLALIEDPALSIEQLMEHIPGPDFPTAA-IVNGRKGIIDAYKTGRGRAVMRAR 245 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314 VE G I+V EIPYQV K+RLIEKIAEL+ K+I + +RDES +D +RIV+ Sbjct: 246 ADVETEDNGRERIIVHEIPYQVNKARLIEKIAELVKDKKIEGISGLRDESDKDGMRIVIE 305 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K R ++++ +++ + M+ F +NM L+ G+ P++ L +L+ ++ HRREV+ R Sbjct: 306 IK-RGEVGEVVLNNLYAQTQMQCSFGINMVALTNGQ-PKLFNLKEMLECFILHRREVVTR 363 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV---------------- 418 R+ F ++ R IL+ L +A NID IIA+I+ P V Sbjct: 364 RTVFELRKARERAHILEALAVALANIDPIIALIKASPTPAEAKVKLVAQGWELGHVKGML 423 Query: 419 ---------------------SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457 +++ LTE Q AIL LRL L LE +I +E + LL Sbjct: 424 EKAGDDAARPEWLEPEFGIRDNKYFLTEQQAQAILELRLHRLTGLEHDKIIAEYEELLEV 483 Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517 + +L+S ++ I E+ EV E F G +R T + D + + +I + Sbjct: 484 IAALLLILSSPQRLMEVITEELHEVLENF------GDKRRTVINANEVDMSL--EDLINE 535 Query: 518 EPITVVISNRGWIR--SLKSHSVDL------SALHFKEGDSLKIALHAHTTDRILLLSTD 569 E + V +S+ G+ + +L + +A K+ D ++ L A+T D IL S Sbjct: 536 EDVVVTLSHLGYAKYQALSDYQAQRRGGKGKAATKVKDEDFVEKLLVANTHDTILCFSDF 595 Query: 570 GKAYTLPAGNL-LSGR-GHGEAIQLLIDLNHNQDI 602 GK Y L L L+ R G I L+ L+ + I Sbjct: 596 GKMYWLKVYQLPLASRTARGRPIVNLLPLSEGERI 630 >gi|307260747|ref|ZP_07542436.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306869586|gb|EFN01374.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 896 Score = 410 bits (1053), Expect = e-112, Method: Compositional matrix adjust. Identities = 239/606 (39%), Positives = 352/606 (58%), Gaps = 55/606 (9%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 +++ VS+ L+ YL YA+S I RA+PD+RDG KPVHRR++ +M + F K Sbjct: 6 KDITPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTFNRPHVK 65 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 SAR+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG+IDGD+ AA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRYTEV 125 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 RM ++ + +L +D++ VD+ Y+ ++ P V P+K P LL NG+SGIAVGMAT+IP H Sbjct: 126 RMQKITQELLTDLDKETVDYSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATNIPPH 185 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 N+ E+ + LA I+N +ISIE+L+ +I GPDFPTG II R+ I E+YR GRG VRA Sbjct: 186 NLNEVLDGCLAYIENEQISIEELMRFIPGPDFPTGAII-NGRKGIEEAYRTGRGKVYVRA 244 Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314 + VE +G I+VTE+PYQV K++LIEKIAEL+ K+I + I+D S + ++ Sbjct: 245 KASVETTEKGREQIIVTELPYQVNKAKLIEKIAELVKDKKIEGISGIQDHSDKKGISIVI 304 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 R ++++ ++ L+ M+ F +NM L G+ P+V+ L I++ ++ HRREV+ R Sbjct: 305 EVKRDAVGEVVLNHLYSLTQMQVTFGINMVALDHGQ-PKVLNLKQIIEAFVKHRREVVTR 363 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN------------------------- 409 R+ F ++ R IL+GL IA NID +I +IRN Sbjct: 364 RTIFELRKARERAHILEGLAIALANIDPVIELIRNSKTADEAREGLLARAWALGNVAPML 423 Query: 410 ----------EDKPKPVMV--SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457 ED P+ + V ++ L+E Q AIL LRL L LE +I E LL E Sbjct: 424 EAAGVDASRPEDLPENLGVRDGQYYLSEAQARAILELRLHRLTGLEHEKIVDEYKALLTE 483 Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517 ++ +L+S ++ I E+ +VK F RRT E++ A + +I + Sbjct: 484 IGELLRILSSAERLMEVIREELEKVKAEFGDE-----RRT---EITAASGDINMEDLIAQ 535 Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569 E + V +S+ G+++ + + SA KE D ++ L A+T D IL S+ Sbjct: 536 EDVVVTLSHAGYVKYQPLSDYEAQRRGGKGKSATKMKENDFIEKLLVANTHDTILCFSSR 595 Query: 570 GKAYTL 575 G+ Y L Sbjct: 596 GRLYQL 601 >gi|157738015|ref|YP_001490699.1| DNA gyrase subunit A [Arcobacter butzleri RM4018] gi|118574920|gb|ABL07037.1| DNA gyrase subunit A [Arcobacter butzleri] gi|157699869|gb|ABV68029.1| DNA gyrase, subunit A [Arcobacter butzleri RM4018] Length = 860 Score = 410 bits (1053), Expect = e-112, Method: Compositional matrix adjust. Identities = 243/636 (38%), Positives = 387/636 (60%), Gaps = 43/636 (6%) Query: 10 NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69 N +++ V++ +++ YL Y++S I RA+PD +DG KPVHRRI++AM ++ + Sbjct: 3 NLFENQDIINVNIEDSVKASYLDYSMSVIIGRALPDAKDGLKPVHRRILYAMHDLSITSK 62 Query: 70 AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129 +A+KKSARIVG+VIGK HPHGD SVYD+LVR+AQ F R PL+ GQGNFG+IDGD+AAA Sbjct: 63 SAYKKSARIVGDVIGKYHPHGDTSVYDALVRMAQSFSLRAPLVDGQGNFGSIDGDNAAAM 122 Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189 RYTEARMT++AE +L+ +D+D V+F Y++ EP V P++ P LL NG+ GIAVGMAT Sbjct: 123 RYTEARMTRIAEEVLRDLDKDTVNFVPNYDDTMKEPSVLPTRVPTLLLNGSEGIAVGMAT 182 Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249 IP HN+ E+ EA L LID PE + ++L++++ GPDFPTGG I R I+++Y GRG Sbjct: 183 KIPPHNLGELLEAILYLIDIPEATADELMQFVQGPDFPTGGTIF-GRRGIIDAYNTGRGR 241 Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-ED 308 R+RA+ +E + IV+ E+PYQV K+RLIE IA L K+I + ++RDES E Sbjct: 242 VRIRAKHHIETKAK-KEIIVIDELPYQVNKARLIELIANLAKDKQIDGISEVRDESDREG 300 Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368 +R+V+ K ++ ++++ +++ + MET F + + + + P+V L IL +L+HR Sbjct: 301 IRVVIELKKDAM-SEIVLNNLYKSTPMETTFGIIL-LAVYNKEPKVFNLPQILNIFLSHR 358 Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTE 425 + V+ RR+ F ++ R IL+GL IA NIDE++ IIR N+ + K + +RF L+ Sbjct: 359 KTVIIRRTIFDLEKAKARAHILEGLKIAVDNIDEVVKIIRSSSNDAEAKESLENRFDLSA 418 Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485 Q AIL++RL L L+ ++++E L+ +++++L S ++ I E+ E+KE Sbjct: 419 IQSQAILDMRLGRLTGLQRDKLEAEYQELMILIAELEAILRSEEKLNEIIREELTEIKEK 478 Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545 FS R T E S D+ ++ +I EP+ V I++ G+++ + + + Sbjct: 479 FSND------RKTEIEDS-YDEIDIED-LIPNEPMVVTITHNGYVKRVPIKAYEKQ---- 526 Query: 546 KEGDSLKIALHAH------------TTDRILLLSTDG-----KAYTLPAGNLLSGRGHGE 588 K G K+A+ H T D ++ ++ G K Y +P G+ ++ G+ Sbjct: 527 KRGGKGKVAVTTHDDDFIERFFVSNTHDTLMFVTNMGQLYWLKVYKIPEGSRIA---KGK 583 Query: 589 AIQLLIDLNHNQ---DIVTAFVYDSTCKLLVVSSKG 621 A+ LI+L ++ +I+ +D + L+ + G Sbjct: 584 AVVNLINLRPDEKIMEIIPTPDFDESKSLVFFTRNG 619 >gi|308271124|emb|CBX27733.1| DNA gyrase subunit A [uncultured Desulfobacterium sp.] Length = 808 Score = 410 bits (1053), Expect = e-112, Method: Compositional matrix adjust. Identities = 240/607 (39%), Positives = 366/607 (60%), Gaps = 26/607 (4%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 E + +++ +++ YL YA+S I RA+PD+RDG KPVHRRI++AM E+ D+ +KK Sbjct: 5 EKLSEINIETEMKKSYLDYAMSVIIGRALPDVRDGLKPVHRRILYAMRELKNDWNKPYKK 64 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 SARIVG+VIGK HPHGD +VYD++VR+AQ F RY L+ GQGNFG++DGD AA RYTE Sbjct: 65 SARIVGDVIGKYHPHGDTAVYDTIVRMAQSFSLRYLLVDGQGNFGSVDGDPPAAMRYTEI 124 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 R+T++A+ +++ +D++ VD Y+E +EP + P+K P LL NG+SGIAVGMATSIP H Sbjct: 125 RLTRLAQEMMEDLDKETVDVVPNYDESLTEPSILPAKIPCLLINGSSGIAVGMATSIPPH 184 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 N+ E+ EA LIDNP+I+ E+L++ + GPDFPT GII R I ++Y GRG +VRA Sbjct: 185 NLSEVAEAIKTLIDNPDITCEELIQIVPGPDFPTAGII-HGRSGIYDAYSTGRGKVKVRA 243 Query: 255 RWCVEEVGRG-SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIV 312 R VE + S IVVTE+PY V K+ LIEKIAELI K+I + +RDES E +RI Sbjct: 244 RVMVETDKKNQSETIVVTELPYMVNKAGLIEKIAELIRDKQIEGVRYVRDESDREGMRIA 303 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 L K + +++ ++ + ME+ F + + R P+V+ L IL+ ++ HR++++ Sbjct: 304 LGLKKDQMSK-IIINHLYKHTRMESTFGIIFLAVVNNR-PEVLTLKQILEYFVLHRKDII 361 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVD 429 +R+ F ++ + R IL+GL +A NIDE+I +I+ P K ++SRF +T Q Sbjct: 362 IKRTKFELRKAEARAHILEGLKVAIDNIDEVILLIKTSKSPSEAKQSLISRFDMTPIQAQ 421 Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489 A+L++RL+ L LE +I E DNLL + + +L S N I E+ ++K + Sbjct: 422 AVLDMRLQRLTGLEREKIIEEYDNLLKDIARYREILASETLVLNIIKDELTQIKNEYG-- 479 Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD--------LS 541 DL RRT + + +++ ++E E + V +S G+I+ + + + Sbjct: 480 -DL--RRTEI--IDETENISIEDLIVE-EDMVVTVSKDGYIKRTPASIYNSQSRGGKGKT 533 Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEAIQLLIDLNHN 599 A+ KE D + + A T L + GK Y ++ +GR G+AI L++ Sbjct: 534 AMMTKEEDFVSMLFVASTHHYFLFFTNQGKVYWCKVYDIPEAGRTSKGKAIVNLLNFAEG 593 Query: 600 QDIVTAF 606 + + T Sbjct: 594 EKLTTVL 600 >gi|86152939|ref|ZP_01071144.1| DNA gyrase, A subunit [Campylobacter jejuni subsp. jejuni HB93-13] gi|85843824|gb|EAQ61034.1| DNA gyrase, A subunit [Campylobacter jejuni subsp. jejuni HB93-13] Length = 863 Score = 410 bits (1053), Expect = e-112, Method: Compositional matrix adjust. Identities = 237/607 (39%), Positives = 377/607 (62%), Gaps = 32/607 (5%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 + +++ V + +++ YL Y++S I RA+PD RDG KPVHRRI++AM F Sbjct: 8 DSDIELVDIENSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFV 67 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSARIVG VIG+ HPHGD +VYD+LVR+AQ F RYP I+GQGNFG+IDGDSAAA RYTE Sbjct: 68 KSARIVGAVIGRYHPHGDTAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTE 127 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 A+M++++ +L+ +D+D VDF Y+ +SEP V PS+ PNLL NG+SGIAVGMAT+IP Sbjct: 128 AKMSKLSHELLKDIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPP 187 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 H++ E+ + L L+DN + S+E+++++I GPDFPTGGII ++ I+E+YR GRG +VR Sbjct: 188 HSLNELIDGLLYLLDNKDASLEEIMQFIKGPDFPTGGIIY-GKKGIIEAYRTGRGRVKVR 246 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIV 312 A+ +E+ IV+ E+PYQ K+RLIE+IAEL+ ++I + ++RDES E +R+V Sbjct: 247 AKTHIEK-KTNKDVIVIDELPYQTNKARLIEQIAELVKERQIEGISEVRDESNKEGIRVV 305 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 + K ++ ++++ ++F + ME+ F + M + + P++ L +L +L HR+ V+ Sbjct: 306 IELKREAM-SEIVLNNLFKSTTMESTFGVIMLAIH-NKEPKIFSLLELLNLFLTHRKTVI 363 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLTENQVD 429 RR+ F +Q R IL+GL IA NIDE+IA+I+N + + +V++F L+E Q + Sbjct: 364 IRRTIFELQKARARAHILEGLKIALDNIDEVIALIKNSSDNNTARDSLVAKFGLSELQAN 423 Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489 AIL+++L L LE +I++EL L+ E +++ +L S N I E++E++ F Sbjct: 424 AILDMKLGRLTGLEREKIENELAELMKEIARLEEILKSETLLENLIRDELKEIRSKF--- 480 Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS-------- 541 D+ R ++ + +I E + V I++RG+I+ + S + Sbjct: 481 -DVPR----ITQIEDDYDDIDIEDLIPNENMVVTITHRGYIKRVPSKQYEKQKRGGKGKL 535 Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDL 596 A+ + D ++ A+T D ++ ++ G K Y +P G S G+A+ LI+L Sbjct: 536 AVTTYDDDFIESFFTANTHDTLMFVTDRGQLYWLKVYKIPEG---SRTAKGKAVVNLINL 592 Query: 597 NHNQDIV 603 + I+ Sbjct: 593 QAEEKIM 599 >gi|306825077|ref|ZP_07458419.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304432513|gb|EFM35487.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 822 Score = 410 bits (1053), Expect = e-112, Method: Compositional matrix adjust. Identities = 254/713 (35%), Positives = 409/713 (57%), Gaps = 52/713 (7%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 + N+ V+L ++ ++ YA+S I RA+PD+RDG KPVHRRI++ M+E+G+ K Sbjct: 3 DRNLVNVNLTKEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHK 62 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSARI G+V+GK HPHGD S+Y+++VR+AQ + RY L+ G GNFG++DGD AAA RYTE Sbjct: 63 KSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYTE 122 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 ARM+++A +L+ + ++ VDF D Y+ + EP+V P++FPNLL NG +GIAVGMAT+IP Sbjct: 123 ARMSKIALEMLRDISKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIPP 182 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E +A ++DNP+++ + L+E + GPDFPTG +++ + I ++Y G+G +R Sbjct: 183 HNLGETIDAVKLVMDNPDVTTKDLMEVLPGPDFPTGALVM-GKSGIHKAYETGKGSIVLR 241 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312 +R +E G IVVTE PY V K+++ E I L+ KRI + +RDES E VR V Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 + K R ++++ ++F ++ M+T F NM + G VP+++ L IL ++ H++EV+ Sbjct: 302 IEVK-RDASANVILNNLFKMTQMQTNFGFNMLAIQNG-VPKILSLRQILDAYIEHQKEVV 359 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVD 429 RR+ F + + R IL+GLLIA +IDE+I IIR + + + ++ +F L+E Q Sbjct: 360 VRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMGKFKLSERQSQ 419 Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489 AIL++RLR L LE +I+SE D L+A + +L ++ I E+ EVK F Sbjct: 420 AILDMRLRRLTGLERDKIQSEYDELIALIADLADILAKPERVAQIIKEELDEVKRKFGD- 478 Query: 490 TDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSL--------KSHSVDL 540 +RRT E+ + TL+ + +IE+ + + +S++G+I+ L K + Sbjct: 479 ----KRRT---ELMVGEVLTLEDEDLIEETDVLITLSDKGYIKRLDQGEFTAQKRGGRGV 531 Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLLSGRG 585 K+ D ++ + T D +L + G+ Y LP NLL Sbjct: 532 QGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLK-LD 590 Query: 586 HGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK-GKTFLKV 644 GE+IQ +I++ + A+++ +T +V + F AN R+ G L + Sbjct: 591 EGESIQTIINVESERSD-DAYLFFTTRHGIVKRTSVKEF--------ANIRQNGLKALNL 641 Query: 645 SSEEKMKLVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSR-GKGVRLQSYKDG 695 E+++ V+ D ++G + F+ + MSR GVR + +DG Sbjct: 642 KDEDELINVLLTEEDTDIIIGTKFGYAVRFNQSAVRGMSRIATGVRGVNLRDG 694 >gi|239630810|ref|ZP_04673841.1| DNA gyrase subunit A [Lactobacillus paracasei subsp. paracasei 8700:2] gi|301065133|ref|YP_003787156.1| DNA gyrase subunit A [Lactobacillus casei str. Zhang] gi|239527093|gb|EEQ66094.1| DNA gyrase subunit A [Lactobacillus paracasei subsp. paracasei 8700:2] gi|300437540|gb|ADK17306.1| DNA gyrase, A subunit [Lactobacillus casei str. Zhang] Length = 873 Score = 410 bits (1053), Expect = e-112, Method: Compositional matrix adjust. Identities = 245/714 (34%), Positives = 406/714 (56%), Gaps = 57/714 (7%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 E + V+L + + +L YA+S I RA+PD+RDG KPV RRI++ M+E+G+ +K Sbjct: 6 ESRITNVNLGETMRKSFLEYAMSVIVARALPDVRDGLKPVQRRILYGMNELGVTPDKPYK 65 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSARIVG+V+GK HPHGD S+Y+ LVR+AQ F RY L+ G GNFG++DGD AAA RYTE Sbjct: 66 KSARIVGDVMGKYHPHGDSSIYEGLVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAMRYTE 125 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 ARM+++A +L+ +++D +DF+D Y+ + EPVV P++FPNLL NG +GIAVGM T+IP Sbjct: 126 ARMSKIAVEMLRDINKDTIDFQDNYDGTEKEPVVLPARFPNLLVNGATGIAVGMTTNIPP 185 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E A L+DNP+ + L++ + GPDFPTGG+++ + I +Y GRG +R Sbjct: 186 HNLSETISALHVLMDNPDATTADLMQALPGPDFPTGGVVM-GKSGIRHAYETGRGTIVLR 244 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313 + V+ G IV+TEIPY V K++++E+IA+L+ K+I + +RDES D ++ Sbjct: 245 GKVDVQTEKSGRERIVITEIPYMVNKAKMVERIADLVHEKKIDGIVTLRDESDRDGMRIV 304 Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373 R +++ +++ L+ ++T F NM + G P+V+ L IL+ +L H+ V+ Sbjct: 305 IDVRRDASASVILNNLYKLTPLQTGFSFNMVAIVNG-APKVLSLKQILQYYLDHQENVIR 363 Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDA 430 RR+ F ++ R IL+GL IA +IDEII IIR+ DK K +++ +F L++ Q A Sbjct: 364 RRTQFDLRKAKAREHILEGLRIALDHIDEIITIIRSSETGDKAKVILMDKFKLSDKQSQA 423 Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490 IL++RL L LE +++SE ++ A +L ++ I E+ ++++ F Sbjct: 424 ILDMRLVRLTGLEREKVESEYKDVEAAIADYTDILARPERVHQIIYNELLDIQKKFGD-- 481 Query: 491 DLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSLKSHSVD--------LS 541 +RRT E+ + +L+ + +IE+E + + +S+ G+++ L + + Sbjct: 482 ---KRRT---ELLVGEVLSLEDEDLIEQEDVVITLSHNGYVKRLATSEFKAQNRGGRGIQ 535 Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAY---------------TLPAGNLLSGRGH 586 ++ + D ++ + T D +L + GK Y +P NLL G G Sbjct: 536 GMNVHDDDFVERLISTSTHDVLLFFTNKGKVYRSKGYEIPEYGRTAKGIPIINLL-GVGA 594 Query: 587 GEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEI--IANTR-KGKTFLK 643 GE IQ +I+++ + + L V+ KG +V+ + + AN R G L Sbjct: 595 GEKIQTVINVHEGE--------NDDRYLFFVTQKG---VVKRTPVKEFANIRSNGLIALN 643 Query: 644 VSSEEKMKLVVKVTGDHVAVVGENRKL-LIFSIDQIPEMSRG----KGVRLQSY 692 + E+++ V+ +G ++G + + F + M R +G+RL+ + Sbjct: 644 LKDEDELNNVILTSGQDNILIGTHLGYSVTFKEQDVRSMGRSATGVRGIRLREH 697 >gi|238785705|ref|ZP_04629680.1| DNA gyrase subunit A [Yersinia bercovieri ATCC 43970] gi|238713390|gb|EEQ05427.1| DNA gyrase subunit A [Yersinia bercovieri ATCC 43970] Length = 892 Score = 410 bits (1053), Expect = e-112, Method: Compositional matrix adjust. Identities = 251/636 (39%), Positives = 369/636 (58%), Gaps = 60/636 (9%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + V++ L+ YL YA+S I RA+PD+RDG KPVHRR++ AM+ +G D+ +KKSA Sbjct: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSA 67 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG++DGDSAAA RYTE RM Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRM 127 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 +++A +L +++D VD+ Y+ + P V P++ PNLL NG+SGIAVGMAT+IP HN+ Sbjct: 128 SKIAHELLADLEKDTVDYVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ + LA I++ ISIE L+EYI GPDFPT II R I E+YR GRG +RAR Sbjct: 188 SEVIDGCLAYIEDENISIEGLMEYIPGPDFPTAAII-NGRRGIEEAYRTGRGKVYIRARG 246 Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314 VE + G I++ EIPYQV K+RLIEKIAEL+ KR+ + +RDES +D +RIV+ Sbjct: 247 EVEADAKTGRETIIIHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K ++ ++++ +++ L+ ++ F +NM LS G+ P+++ L IL ++ HRREV+ R Sbjct: 307 IKRDAVG-EVVLNNLYSLTQLQVTFGINMVALSQGQ-PKLLNLKDILVAFVRHRREVVTR 364 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK----------------PVMV 418 R+ F ++ R IL+ L IA NID II +IR P M+ Sbjct: 365 RTIFELRKARDRAHILEALAIALANIDPIIELIRRAATPAEAKAGLIASPWELGNVSAML 424 Query: 419 SR---------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457 R + LTE Q AIL+LRL+ L LE ++ E LL Sbjct: 425 ERAGGDAARPEWLEAEFGIRDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLTA 484 Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517 ++ +L + ++ I E+ +KE +S + RRT E++ + +I + Sbjct: 485 IAELIFILENPERLMEVIREELVAIKEQYSDA-----RRT---EITANTSDINIEDLINQ 536 Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569 E + V +S++G+++ + + SA KE D + L A+T D IL S+ Sbjct: 537 EDVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSR 596 Query: 570 GKAYTLPAGNLL-SGRG-HGEAIQLLIDLNHNQDIV 603 G+ Y + L + RG G I L+ L N+ I Sbjct: 597 GRLYWMKVYQLPEASRGARGRPIVNLLPLEPNERIT 632 >gi|210634745|ref|ZP_03298273.1| hypothetical protein COLSTE_02200 [Collinsella stercoris DSM 13279] gi|210158685|gb|EEA89656.1| hypothetical protein COLSTE_02200 [Collinsella stercoris DSM 13279] Length = 929 Score = 410 bits (1053), Expect = e-112, Method: Compositional matrix adjust. Identities = 254/706 (35%), Positives = 401/706 (56%), Gaps = 40/706 (5%) Query: 26 LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85 +++ ++ Y++S I RA+PD+RDG KPVHRRI++AM+E G+ KKSA VGEVIGK Sbjct: 81 MKQSFIEYSMSVITARALPDVRDGLKPVHRRILYAMNESGIFPNRPHKKSAWTVGEVIGK 140 Query: 86 LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145 HPHGD +VYD++VRLAQ F R PLI G GNFGNIDGD AAA RYTE+R+ + A +L+ Sbjct: 141 YHPHGDSAVYDTMVRLAQWFSMRTPLIDGHGNFGNIDGDGAAAMRYTESRLAKPAMELLR 200 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 + +D VD++ Y+E +EP P++FPNLL NG+ GIAVGMAT+I HN+ E EA Sbjct: 201 DLQKDTVDWQPNYDESLAEPTALPARFPNLLVNGSQGIAVGMATNIAPHNMNEAIEATCY 260 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265 LID+P+ ++++L++ + GPDFPTG +I+ + E I +SY GRG VRA+ VE G Sbjct: 261 LIDHPDATVDELMQIMPGPDFPTGALIMGT-EGIRQSYETGRGSITVRAKAHVESTKTGR 319 Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325 +V TEIPY V K L EKIA L+ KRI + D+RDES + ++ + + P ++ Sbjct: 320 SRLVFTEIPYMVNKGTLQEKIASLVNEKRIEGISDMRDESTQKGLRLVIELKKGVIPQVV 379 Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385 + +++ + ++T F N N+ + VP+ + L +L+ ++ H+ +V+ RR+ F ++ Sbjct: 380 LNNLYKYTSLQTTFGAN-NLALVNGVPKCLSLREMLQHYIDHQVDVVTRRTRFDLKKAQA 438 Query: 386 RVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLTENQVDAILNLRLRSLRKL 442 R IL+G LIA +IDE+I+IIR+ + + ++ RF + Q AIL ++LR L L Sbjct: 439 RAHILEGYLIALDHIDEVISIIRSSQTDAEASSRLIERFGFSPEQTTAILEMKLRRLTGL 498 Query: 443 EEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEV 502 E +I+ ELD L + LL ++ I E+RE+ F +RRT ++ Sbjct: 499 ERDKIEEELDGLRRAIAYYEDLLAHEEKILGVIKEEMREIARKFGD-----KRRT---QI 550 Query: 503 SRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIA 554 + +K + +I E + V I++ G++ R+ K +S ++ KE D + Sbjct: 551 THVEKDLDVEDLIADEDMVVTITHTGYVKRIPVAAYRAQKRGGKGVSGVNLKEDDVIDEM 610 Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQDIVT-----AFV 607 A T + +L S+ GK Y L L G + G AI L+ + I + AF Sbjct: 611 FIASTHEYVLFFSSKGKVYRLKVHELPEGTRQARGTAIVNLLPFEDGEKIASVISCRAFP 670 Query: 608 YDSTCKLLVVSSKGNAFIVEESEIIA---NTRKGKTFLKVSSEEKMKLVVKVT-GDHVAV 663 D L+ ++ G +V+++ + A + R G + + + +++ V +V GD + + Sbjct: 671 EDEY--LMFATASG---MVKKTAMAAYDRSRRDGLIAINIKAGDRLLGVRRVKPGDKIIM 725 Query: 664 VGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVICFKICEG 708 K ++F DQ+ R GVR + K G ++V+ +I G Sbjct: 726 ATTAGKAIMFCEDQVRATGRDTSGVRGITMKGG--TEVLGMEITNG 769 >gi|256848501|ref|ZP_05553943.1| DNA gyrase, A subunit [Lactobacillus coleohominis 101-4-CHN] gi|256714768|gb|EEU29747.1| DNA gyrase, A subunit [Lactobacillus coleohominis 101-4-CHN] Length = 836 Score = 410 bits (1053), Expect = e-112, Method: Compositional matrix adjust. Identities = 223/569 (39%), Positives = 351/569 (61%), Gaps = 24/569 (4%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 V L + +L YA+S I RA+PD+RDG KPV RRI++ M+E+G+ +KKSARIV Sbjct: 13 VKLTSQMRNSFLDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVTPDKPYKKSARIV 72 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+V+GK HPHGD S+Y+ LVR+AQ F RY L+ G GNFG++DGD AAA RYTEARM+++ Sbjct: 73 GDVMGKFHPHGDSSIYEGLVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAMRYTEARMSKI 132 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A +L+ +++D VDF+D Y+ + EP V P++FPNLL NG SGIAVGMAT+IP+HN+ E+ Sbjct: 133 AVEMLRDINKDTVDFQDNYDGTEKEPTVLPARFPNLLVNGASGIAVGMATNIPTHNLGEV 192 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 A L+DNP+ + E L++ + GPDFPTGG+++ + I ++Y G+G VRA+ +E Sbjct: 193 ISAIHVLMDNPDATTEDLMKVLPGPDFPTGGVVL-GKSGIRKAYETGKGTIIVRAKVDIE 251 Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLFPKNR 318 E G I+V EIPY V K++LIE+IAEL K I + D+ DE+ E +RIV+ + R Sbjct: 252 ETKTGRQQIIVHEIPYMVNKAKLIERIAELAREKEIDGITDVNDETDREGMRIVIDVR-R 310 Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378 ++++ +++ ++ M+T F NM + G P+++ L IL +L H+ EV+ RR+ F Sbjct: 311 DASAEVILNNLYKMTMMQTTFNFNMLAIVKG-APKILSLKEILTYYLEHQEEVVRRRTEF 369 Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAILNLR 435 ++ + R I++GL IA +IDEII IIR K ++S++ L++ Q AIL++R Sbjct: 370 ELKKAESRAHIVEGLRIALDHIDEIIKIIRQSQTSEVAKSELMSKYGLSDRQAQAILDMR 429 Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495 L L LE +I++E L+ +L ++ I E++E++ F + R Sbjct: 430 LVRLTGLEREKIEAEYKKLMEAIADYKDILAHRERIQQIIYDELKEIQRRFGDA-----R 484 Query: 496 RTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSL-----KSHS---VDLSALHFK 546 RT E+ D L+ + +IE++ I V +++ G+I+ L KS + + + Sbjct: 485 RT---ELQVGDITNLEDEDLIEQQDIVVTLTHNGYIKRLPVDEFKSQNRGGRGVKGMGVH 541 Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTL 575 D ++ + + T D +L + GK +++ Sbjct: 542 SDDFIEHLISSSTHDMLLFFTNSGKVFSM 570 >gi|157415284|ref|YP_001482540.1| DNA gyrase subunit A [Campylobacter jejuni subsp. jejuni 81116] gi|157386248|gb|ABV52563.1| DNA gyrase subunit A [Campylobacter jejuni subsp. jejuni 81116] gi|307747926|gb|ADN91196.1| DNA gyrase subunit A [Campylobacter jejuni subsp. jejuni M1] gi|315932157|gb|EFV11100.1| DNA gyrase, A subunit [Campylobacter jejuni subsp. jejuni 327] Length = 863 Score = 410 bits (1053), Expect = e-112, Method: Compositional matrix adjust. Identities = 237/607 (39%), Positives = 377/607 (62%), Gaps = 32/607 (5%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 + +++ V + +++ YL Y++S I RA+PD RDG KPVHRRI++AM F Sbjct: 8 DSDIELVDIENSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFV 67 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSARIVG VIG+ HPHGD +VYD+LVR+AQ F RYP I+GQGNFG+IDGDSAAA RYTE Sbjct: 68 KSARIVGAVIGRYHPHGDTAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTE 127 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 A+M++++ +L+ +D+D VDF Y+ +SEP V PS+ PNLL NG+SGIAVGMAT+IP Sbjct: 128 AKMSKLSHELLKDIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPP 187 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 H++ E+ + L L+DN + S+E+++++I GPDFPTGGII ++ I+E+YR GRG +VR Sbjct: 188 HSLNELIDGLLYLLDNKDASLEEIMQFIKGPDFPTGGIIY-GKKGIIEAYRTGRGRVKVR 246 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIV 312 A+ +E+ IV+ E+PYQ K+RLIE+IAEL+ ++I + ++RDES E +R+V Sbjct: 247 AKTHIEK-KTNKDVIVIDELPYQTNKARLIEQIAELVKERQIEGISEVRDESNKEGIRVV 305 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 + K ++ ++++ ++F + ME+ F + M + + P++ L +L +L HR+ V+ Sbjct: 306 IELKREAM-SEIVLNNLFKSTTMESTFGVIMLAIH-NKEPKIFSLLELLNLFLTHRKTVI 363 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLTENQVD 429 RR+ F +Q R IL+GL IA NIDE+IA+I+N + + +V++F L+E Q + Sbjct: 364 IRRTIFELQKARARAHILEGLKIALDNIDEVIALIKNSSDNNTARDSLVAKFGLSELQAN 423 Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489 AIL+++L L LE +I++EL L+ E +++ +L S N I E++E++ F Sbjct: 424 AILDMKLGRLTGLEREKIENELAELMKEIARLEEILKSETLLENLIRDELKEIRSKF--- 480 Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS-------- 541 D+ R ++ + +I E + V I++RG+I+ + S + Sbjct: 481 -DVPR----ITQIEDDYDDIDIEDLIPNENMVVTITHRGYIKRVPSKQYEKQKRGGKGKL 535 Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDL 596 A+ + D ++ A+T D ++ ++ G K Y +P G S G+A+ LI+L Sbjct: 536 AVTTYDDDFIESFFTANTHDTLMFVTDRGQLYWLKVYKIPEG---SRTAKGKAVVNLINL 592 Query: 597 NHNQDIV 603 + I+ Sbjct: 593 QAEEKIM 599 >gi|241667990|ref|ZP_04755568.1| DNA topoisomerase (ATP-hydrolyzing) [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254876524|ref|ZP_05249234.1| DNA gyrase subunit A gyrA [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254842545|gb|EET20959.1| DNA gyrase subunit A gyrA [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 864 Score = 410 bits (1053), Expect = e-112, Method: Compositional matrix adjust. Identities = 255/728 (35%), Positives = 411/728 (56%), Gaps = 87/728 (11%) Query: 19 AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78 ++++ L++ YL YA+S I RA+PD+RDG KPVHRR++ AM+E+ + +KKSAR+ Sbjct: 10 SINIEKELKQSYLDYAMSVIIGRALPDVRDGLKPVHRRVLFAMNELSNYYNRPYKKSARV 69 Query: 79 VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138 VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG++DGDS AA RYTE RM + Sbjct: 70 VGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYTLVDGQGNFGSVDGDSPAAMRYTEIRMQK 129 Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198 + +L +D++ VDF Y+ + P V P++ PNLL NG+SGIAVGMAT+IP HN+ E Sbjct: 130 LTHELLIDIDKETVDFSPNYDNTELVPDVLPTRVPNLLINGSSGIAVGMATNIPPHNMTE 189 Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258 + +ALIDN +++IE L++YI PDFPTG I + I+E+Y+ GRG +RA+ + Sbjct: 190 VINGTMALIDNSQLTIEDLIQYIPAPDFPTGSYI-NGTDGILEAYKTGRGRVIMRAKADI 248 Query: 259 -EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPK 316 E+ G IV+TEIPYQV K++L+EKIAEL+ K++ + ++RDES +D +R+V+ K Sbjct: 249 HEDEASGKSQIVITEIPYQVNKAKLVEKIAELVKDKKVTGISELRDESDKDGIRVVIDLK 308 Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376 R P++++ +++ + ++ F +NM LS R P+++ L IL++++ HR+EV+ RR+ Sbjct: 309 -RDESPEVVLNTLYAQTQLQCSFGINMVALSDNR-PKLLNLKEILEQFIKHRKEVVTRRT 366 Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR------------- 420 F ++ R IL+GLL++ NIDE+I +I+ P K M++R Sbjct: 367 IFELRKSKERAHILEGLLLSLANIDEMIDLIKASPSPAEAKESMLARSWNGSMVKSMLEG 426 Query: 421 ----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458 ++LTE Q +AIL LRL L LE+ +I +E L+ Sbjct: 427 VDVKMYRKETLASHYGIQADSSYNLTEEQAEAILALRLHRLTGLEQDKITNEFKELIERI 486 Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518 + + +L+ + + E+ E+++ + G R + VSR D ++ +I +E Sbjct: 487 KYLIGILSDVSELIRVVKEELVEIRDNY------GDERKSEIIVSRLD--LTREDLITEE 538 Query: 519 PITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570 + V +S G++++ K V SA KE DS+ + A T D +L S+ G Sbjct: 539 DMVVTLSMDGYVKTQPLSMYNAQKRGGVGKSATKTKEEDSIFKLMLASTHDTMLCFSSLG 598 Query: 571 -----KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV----YDSTCKLLVVSSKG 621 K Y P + +S G I ++ L+ N+ I TA + + + + + G Sbjct: 599 RVYWSKVYDFPVASRIS---KGRPINNILPLDKNERI-TALMPISEFTEGWYVFMSTKLG 654 Query: 622 NAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEM 681 V+ SE GK + ++ +++ +VA+ N+++++FS Sbjct: 655 RVKKVDLSEFARPRSTGKIAIGLNDGDELS--------YVALTDGNKQIMMFS------- 699 Query: 682 SRGKGVRL 689 GK +R Sbjct: 700 DAGKAIRF 707 >gi|167627420|ref|YP_001677920.1| DNA topoisomerase [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|167597421|gb|ABZ87419.1| DNA topoisomerase (ATP-hydrolyzing) [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 864 Score = 410 bits (1053), Expect = e-112, Method: Compositional matrix adjust. Identities = 255/728 (35%), Positives = 411/728 (56%), Gaps = 87/728 (11%) Query: 19 AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78 ++++ L++ YL YA+S I RA+PD+RDG KPVHRR++ AM+E+ + +KKSAR+ Sbjct: 10 SINIEKELKQSYLDYAMSVIIGRALPDVRDGLKPVHRRVLFAMNELSNYYNRPYKKSARV 69 Query: 79 VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138 VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG++DGDS AA RYTE RM + Sbjct: 70 VGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYTLVDGQGNFGSVDGDSPAAMRYTEIRMQK 129 Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198 + +L +D++ VDF Y+ + P V P++ PNLL NG+SGIAVGMAT+IP HN+ E Sbjct: 130 LTHELLIDIDKETVDFSPNYDNTELVPDVLPTRVPNLLINGSSGIAVGMATNIPPHNMTE 189 Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258 + +ALIDN +++IE L++YI PDFPTG I + I+E+Y+ GRG +RA+ + Sbjct: 190 VINGTMALIDNSQLTIEDLIQYIPAPDFPTGSYI-NGTDGILEAYKTGRGRVIMRAKVDI 248 Query: 259 -EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPK 316 E+ G IV+TEIPYQV K++L+EKIAEL+ K++ + ++RDES +D +R+V+ K Sbjct: 249 HEDEASGKSQIVITEIPYQVNKAKLVEKIAELVKDKKVTGISELRDESDKDGIRVVIDLK 308 Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376 R P++++ +++ + ++ F +NM LS R P+++ L IL++++ HR+EV+ RR+ Sbjct: 309 -RDESPEVVLNTLYAQTQLQCSFGINMVALSDNR-PKLLNLKEILEQFIKHRKEVVTRRT 366 Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR------------- 420 F ++ R IL+GLL++ NIDE+I +I+ P K M++R Sbjct: 367 IFELRKSKERAHILEGLLLSLANIDEMIDLIKASPSPAEAKESMLARSWNGSMVKSMLEG 426 Query: 421 ----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458 ++LTE Q +AIL LRL L LE+ +I +E L+ Sbjct: 427 VDVKMYRKETLASHYGIQADSSYNLTEEQAEAILALRLHRLTGLEQDKITNEFKELIERI 486 Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518 + + +L+ + + E+ E+++ + G R + VSR D ++ +I +E Sbjct: 487 KYLIGILSDVSELIRVVKEELVEIRDNY------GDERKSEIIVSRLD--LTREDLITEE 538 Query: 519 PITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570 + V +S G++++ K V SA KE DS+ + A T D +L S+ G Sbjct: 539 DMVVTLSMDGYVKTQPLSMYNAQKRGGVGKSATKTKEEDSIFKLMLASTHDTMLCFSSLG 598 Query: 571 -----KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV----YDSTCKLLVVSSKG 621 K Y P + +S G I ++ L+ N+ I TA + + + + + G Sbjct: 599 RVYWSKVYDFPVASRIS---KGRPINNILPLDKNERI-TALMPISEFTEGWYVFMSTKLG 654 Query: 622 NAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEM 681 V+ SE GK + ++ +++ +VA+ N+++++FS Sbjct: 655 RVKKVDLSEFARPRSTGKIAIGLNDGDELS--------YVALTDGNKQIMMFS------- 699 Query: 682 SRGKGVRL 689 GK +R Sbjct: 700 DAGKAIRF 707 >gi|288934292|ref|YP_003438351.1| DNA gyrase subunit alpha [Klebsiella variicola At-22] gi|288889021|gb|ADC57339.1| DNA gyrase, A subunit [Klebsiella variicola At-22] Length = 877 Score = 410 bits (1053), Expect = e-112, Method: Compositional matrix adjust. Identities = 265/727 (36%), Positives = 401/727 (55%), Gaps = 67/727 (9%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + V++ L+ YL YA+S I RA+PD+RDG KPVHRR+++AM+ +G D+ A+KKSA Sbjct: 8 ITPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG+IDGDSAAA RYTE R+ Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 ++A ++ ++++ VDF D Y+ + P V P+K PNLL NG SGIAVGMAT+IP HN+ Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTERIPDVMPTKIPNLLVNGASGIAVGMATNIPPHNL 187 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ LA +D+ +ISIE L+ +I GPDFPT II R I E+YR GRG +RAR Sbjct: 188 TEVINGCLAYVDDEDISIEGLMAHIPGPDFPTAAII-NGRRGIEEAYRTGRGKVYIRARA 246 Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314 VE + G I+V EIPYQV K+RLIEKIAEL+ KR+ + +RDES +D +RIV+ Sbjct: 247 EVEVDAKSGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K ++ ++++ +++ + ++ F +NM L G+ P++M L I+ ++ HRREV+ R Sbjct: 307 VKRDAVG-EVVLNNLYSQTQLQVSFGINMVALHHGQ-PKIMNLKDIIAAFVRHRREVVTR 364 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS--------------- 419 R+ F ++ R IL+ L +A NID II +IR P V+ Sbjct: 365 RTIFELRKARDRAHILEALAVALANIDPIIELIRRAPTPAEAKVALVAQAWDLGNVAAML 424 Query: 420 ----------------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457 ++ LTE Q AIL+LRL+ L LE ++ E LL + Sbjct: 425 ERAGDDAARPEWLEPEFGVRDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQ 484 Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517 ++ +L S + I E+ +++ F G R T + AD + +I + Sbjct: 485 IAELLHILGSADRLMEVIREELELIRDQF------GDERRTEITANSADINI--EDLINQ 536 Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569 E + V +S++G+++ + + SA KE D + L A+T D IL S+ Sbjct: 537 EDVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSR 596 Query: 570 GKAYTLPAGNLL-SGRG-HGEAIQLLIDLNHNQDIVTAFV----YDSTCKLLVVSSKGNA 623 G+ Y + L + RG G I L+ L ++ I TA + Y+ + + ++ G Sbjct: 597 GRLYWMKVYQLPEASRGARGRPIVNLLPLEADERI-TAILPVREYEEGVNVFMATASGTV 655 Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMS 682 +E G + ++ +++ V +G D V + K++ F D + M Sbjct: 656 KKTALTEFSRPRSAGIIAVNLNEGDELIGVDLTSGQDEVMLFSAAGKVVRFKEDAVRAMG 715 Query: 683 R-GKGVR 688 R GVR Sbjct: 716 RTATGVR 722 >gi|191636830|ref|YP_001985996.1| DNA gyrase, A subunit [Lactobacillus casei BL23] gi|190711132|emb|CAQ65138.1| DNA gyrase, A subunit [Lactobacillus casei BL23] gi|327380869|gb|AEA52345.1| DNA gyrase, A subunit [Lactobacillus casei LC2W] gi|327384033|gb|AEA55507.1| DNA gyrase, A subunit [Lactobacillus casei BD-II] Length = 873 Score = 410 bits (1053), Expect = e-112, Method: Compositional matrix adjust. Identities = 245/714 (34%), Positives = 406/714 (56%), Gaps = 57/714 (7%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 E + V+L + + +L YA+S I RA+PD+RDG KPV RRI++ M+E+G+ +K Sbjct: 6 ESRITNVNLGETMRKSFLEYAMSVIVARALPDVRDGLKPVQRRILYGMNELGVTPDKPYK 65 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSARIVG+V+GK HPHGD S+Y+ LVR+AQ F RY L+ G GNFG++DGD AAA RYTE Sbjct: 66 KSARIVGDVMGKYHPHGDSSIYEGLVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAMRYTE 125 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 ARM+++A +L+ +++D +DF+D Y+ + EPVV P++FPNLL NG +GIAVGM T+IP Sbjct: 126 ARMSKIAVEMLRDINKDTIDFQDNYDGTEKEPVVLPARFPNLLVNGATGIAVGMTTNIPP 185 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E A L+DNP+ + L++ + GPDFPTGG+++ + I +Y GRG +R Sbjct: 186 HNLSETISALHVLMDNPDATTADLMQALPGPDFPTGGVVM-GKSGIRHAYETGRGTIVLR 244 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313 + V+ G IV+TEIPY V K++++E+IA+L+ K+I + +RDES D ++ Sbjct: 245 GKVDVQTEKSGRERIVITEIPYMVNKAKMVERIADLVHEKKIDGIVTLRDESDRDGMRIV 304 Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373 R +++ +++ L+ ++T F NM + G P+V+ L IL+ +L H+ V+ Sbjct: 305 IDVRRDASASVILNNLYKLTPLQTGFSFNMVAIVNG-APKVLSLKQILQYYLDHQENVIR 363 Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDA 430 RR+ F ++ R IL+GL IA +IDEII IIR+ DK K +++ +F L++ Q A Sbjct: 364 RRTQFDLRKAKAREHILEGLRIALDHIDEIITIIRSSETGDKAKVILMDKFKLSDKQSQA 423 Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490 IL++RL L LE +++SE ++ A +L ++ I E+ ++++ F Sbjct: 424 ILDMRLVRLTGLEREKVESEYKDVEAAIADYTDILARPERVHQIIYNELLDIQKKFGD-- 481 Query: 491 DLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSLKSHSVD--------LS 541 +RRT E+ + +L+ + +IE+E + + +S+ G+++ L + + Sbjct: 482 ---KRRT---ELLVGEVLSLEDEDLIEQEDVVITLSHNGYVKRLATSEFKAQNRGGRGIQ 535 Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAY---------------TLPAGNLLSGRGH 586 ++ + D ++ + T D +L + GK Y +P NLL G G Sbjct: 536 GMNVHDDDFVERLISTSTHDVLLFFTNKGKVYRSKGYEIPEYGRTAKGIPIINLL-GVGA 594 Query: 587 GEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEI--IANTR-KGKTFLK 643 GE IQ +I+++ + + L V+ KG +V+ + + AN R G L Sbjct: 595 GEKIQTVINVHEGE--------NDDRYLFFVTQKG---VVKRTPVKEFANIRSNGLIALN 643 Query: 644 VSSEEKMKLVVKVTGDHVAVVGENRKL-LIFSIDQIPEMSRG----KGVRLQSY 692 + E+++ V+ +G ++G + + F + M R +G+RL+ + Sbjct: 644 LKDEDELNNVILTSGQDNILIGTHLGYSVTFKEQDVRSMGRSATGVRGIRLREH 697 >gi|86142208|ref|ZP_01060718.1| DNA gyrase A subunit [Leeuwenhoekiella blandensis MED217] gi|85830960|gb|EAQ49417.1| DNA gyrase A subunit [Leeuwenhoekiella blandensis MED217] Length = 845 Score = 410 bits (1053), Expect = e-112, Method: Compositional matrix adjust. Identities = 229/615 (37%), Positives = 374/615 (60%), Gaps = 31/615 (5%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 E + +++ ++ Y+ Y++S I RA+PD+RDG KPVHRR++ M E+G+ +A KK Sbjct: 5 EKLIPINIEDEMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLFGMHELGVRSNSAHKK 64 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 SARIVGEV+GK HPHGD SVYD++VR+AQ + RY L+ GQGNFG++DGDS AA RYTEA Sbjct: 65 SARIVGEVLGKYHPHGDTSVYDTMVRMAQEWSLRYMLVDGQGNFGSVDGDSPAAMRYTEA 124 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 RM +++E +L +D+D VD +++ EP V P++ P LL NG SGIAVGMAT++P H Sbjct: 125 RMRKISEEMLADIDKDTVDHTLNFDDTLKEPTVLPTRIPGLLVNGASGIAVGMATNMPPH 184 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 N+ E+ +A I+N +I I++L+++I PDFPTGG I + + E+++ GRG +RA Sbjct: 185 NLTEVVNGTIAYIENNDIEIDELMQHITAPDFPTGGTIY-GYDGVREAFKTGRGRVVLRA 243 Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314 + +EEV +G CI+V+EIPYQV K+ +I+K A+L+ K+I + IRDES +++ Sbjct: 244 KAIIEEV-KGRECIIVSEIPYQVNKADMIKKTADLVNEKKIDGIASIRDESDRKGMRIVY 302 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 R P++++ ++F + +++ F +N L GR P+++ L ++ ++ HR EV+ R Sbjct: 303 VLKRDAIPNIVLNTLFKYTALQSSFSVNNIALVKGR-PEMLNLKDMIHHFVDHRHEVVVR 361 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAI 431 R+ + ++ + R IL+GL+IA NIDE+IA+IR N ++ + ++ RF LTE Q AI Sbjct: 362 RTEYELKKAEDRAHILEGLIIASDNIDEVIALIRASSNAEEARQKLIDRFELTEIQARAI 421 Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491 + +RLR L LE+ +++ E + LL E + +L +++ + I E+ E++ + Sbjct: 422 VEMRLRQLTGLEQDKLREEYEELLKTIEDLKDILARKERRMDIIKEELEEIRAKY----- 476 Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSVDLSALHFKEGD 549 G R T +++ D + +I E + + IS+ G+++ SL + ++G Sbjct: 477 -GDERRTDIDIAGGDVSITD--LIPDEKVVLTISHAGYVKRTSLMEYKTQNRGGVGQKGS 533 Query: 550 SLKIA-----LHAHTTDRILLLSTD-GKA-----YTLPAGNLLSGRGHGEAIQLLIDLNH 598 + + L T + L+ T+ GK + +P G+ S G AIQ LI++ Sbjct: 534 TTRNEDFLEHLFVGTNHQYLIFFTEKGKCFWVRVFEIPEGSKTS---KGRAIQNLINIEP 590 Query: 599 NQDIVTAFVYDSTCK 613 + D V AF+ + K Sbjct: 591 D-DKVKAFICTNDLK 604 >gi|255527580|ref|ZP_05394444.1| DNA gyrase, A subunit [Clostridium carboxidivorans P7] gi|296186778|ref|ZP_06855179.1| DNA gyrase, A subunit [Clostridium carboxidivorans P7] gi|255508713|gb|EET85089.1| DNA gyrase, A subunit [Clostridium carboxidivorans P7] gi|296048492|gb|EFG87925.1| DNA gyrase, A subunit [Clostridium carboxidivorans P7] Length = 823 Score = 409 bits (1052), Expect = e-112, Method: Compositional matrix adjust. Identities = 259/753 (34%), Positives = 427/753 (56%), Gaps = 32/753 (4%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 V + +++ Y+ YA+S I RA+PD+RDG KPVHRRI+++M E+GL ++K ARIV Sbjct: 10 VDISHEMKKCYIDYAMSVIVGRALPDVRDGLKPVHRRILYSMHELGLTPDKGYRKCARIV 69 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+V+GK HPHGD +VYD+LVRLAQ F RY L++G GNFG++DGDSAAA RYTEA+M ++ Sbjct: 70 GDVLGKYHPHGDTAVYDALVRLAQDFSIRYTLVNGHGNFGSVDGDSAAAMRYTEAKMNKI 129 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 +L+ ++++ VDF ++ E+ EP V P++FPNLL NG++GIAVGMAT+IP HN+ E+ Sbjct: 130 TLEMLRDINKNTVDFVPNFDGEEQEPSVIPARFPNLLVNGSAGIAVGMATNIPPHNLTEV 189 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 LIDNPE++I +L+ I GPDFPT GII+ + I ++Y GRG VRA+ +E Sbjct: 190 INGISMLIDNPEVTITELMTEIKGPDFPTAGIIL-GKLGIRDAYETGRGKVIVRAKTDIE 248 Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFPKNR 318 E +G I+VTEIPYQV K++LIE IA+L+ K+I + DIRDES E +RIV+ K R Sbjct: 249 E-EKGRHRIIVTEIPYQVNKAKLIESIADLVKDKKIEGISDIRDESDREGMRIVIELK-R 306 Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378 +P++++ ++ + M+ F + M L + P+V+ L IL +L ++EV+ RR+ F Sbjct: 307 DANPNVILNQLYKHTKMQDTFGIIMLALVNNK-PEVLNLKQILVHYLEFQKEVIRRRTKF 365 Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAILNLR 435 + R IL+GL IA +IDE+I +IR N ++ K +++ F+L+E Q AIL++R Sbjct: 366 DLDKALARAHILEGLRIALDHIDEVINLIRSSKNGEEAKNGLMNSFNLSEKQAQAILDMR 425 Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495 L+ L LE +I++E L + +L + I E+ E+K + R Sbjct: 426 LQRLTGLEREKIENEYKELENTIAYLKDVLAKEELVLKIIKEELTEIKNKYGDD-----R 480 Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD--------LSALHFKE 547 RT E+ + D + +I+++ + V +++ G+I+ + + + + A+ KE Sbjct: 481 RT---EIQKNDNEISIEDLIQEQEVVVTLTHAGYIKRIAADTYSAQKRGGKGIQAMTTKE 537 Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL----IDLNHN-QDI 602 D ++ T + IL + G+ Y L L + + L+ I+ N Q + Sbjct: 538 DDFVEHMFVTSTHNNILFFTNRGRVYKLKGYELPDAGRTAKGVNLINLLPIETNEKIQAV 597 Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HV 661 +T +D T ++ + +G + S+ + + G + + ++++ V TG+ + Sbjct: 598 ITFKEFDKTNYFIMGTRQGLIKKTQVSQYSSIRKNGLNAINLREDDELIGVRMTTGESEI 657 Query: 662 AVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYN 720 V +N + F+ + M R GV+ + + I+ V +CEG + + + Sbjct: 658 LVFTKNGYAIRFNERDVRPMGRTATGVKAITLRKEDIA-VAMDIVCEGQDVLVISENGFG 716 Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753 + +RGG G + K ++G + + Sbjct: 717 KRTPVSEYTPHRRGGKGMITYKITEKTGAIVGA 749 >gi|84516181|ref|ZP_01003541.1| DNA gyrase subunit A [Loktanella vestfoldensis SKA53] gi|84509877|gb|EAQ06334.1| DNA gyrase subunit A [Loktanella vestfoldensis SKA53] Length = 908 Score = 409 bits (1052), Expect = e-112, Method: Compositional matrix adjust. Identities = 256/726 (35%), Positives = 398/726 (54%), Gaps = 66/726 (9%) Query: 19 AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78 +V++ L+ YL YA+S I RAIPDLRDG KPVHRRI++ M E G +++KSAR Sbjct: 25 SVTIEHELKTSYLDYAMSVIVSRAIPDLRDGLKPVHRRILYGMYEAGNTHDKSYRKSARS 84 Query: 79 VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138 VG+V+GK HPHGD ++YD+LVR+AQ F PL+ GQGNFG++DGD AAA RYTE RM + Sbjct: 85 VGDVMGKYHPHGDSAIYDALVRMAQDFSMSLPLLDGQGNFGSMDGDRAAAMRYTEVRMDK 144 Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198 A +L +D+D VDF+D Y+ +D EP V P++FPN+L NG GIAVGMAT+IP HN+ E Sbjct: 145 PAAYMLMDIDKDTVDFQDNYDGKDREPTVLPARFPNMLVNGAGGIAVGMATNIPPHNLGE 204 Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258 + +A LALIDNP+++ E+++E+I PDFPTGG+I+ R ++Y GRG VRA+ V Sbjct: 205 VIDATLALIDNPDLTSEEMIEFIPAPDFPTGGLIL-GRSGARKAYLEGRGSVIVRAKTVV 263 Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKN 317 EE+ + + IV+ EIPYQV KS +I++IAE KRI + ++DES + VR+V+ K Sbjct: 264 EEIRKDRYAIVINEIPYQVNKSVMIDRIAEAARDKRIEGIAHVQDESDRNGVRVVVELK- 322 Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377 R ++++ +F + M+T F NM L+ G+ P+ + L L ++ R EV+ RR++ Sbjct: 323 RDATAEVVLNQLFRFTPMQTYFGCNMLALNGGK-PEQLTLRAFLVAFVDFREEVIARRTA 381 Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE----DKPKPVMVSR------------- 420 F ++ R IL GL +A NIDE++A IR D +M R Sbjct: 382 FELRKARERAHILCGLAVAVTNIDEVVATIRGSADAADARHTLMTRRWPAAAILEYIKLI 441 Query: 421 ------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSG 468 ++L+E Q AIL LRL+ L ++ ++ EL L + + +L S Sbjct: 442 DDPTHTANDDGTYNLSEAQARAILELRLQRLTQIGVKEVTDELQELAGKIREYLEILGSR 501 Query: 469 KQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRG 528 + I E+ EV++ F+ RRT + S + +IE+E + V +++ G Sbjct: 502 DRILQIIRDELTEVRDQFAVP-----RRTQIVDWS---GDMDDEDLIEQEDMVVTVTSGG 553 Query: 529 WI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL 580 +I R+ + LS++ KE D + A+T ++L +TDG AY L L Sbjct: 554 YIKRTALADFRAQRRGGKGLSSMATKEEDVVTTLFVANTHTQLLFFTTDGMAYKLKTWRL 613 Query: 581 LSGR--GHGEAIQLLIDLNHNQDIVTAFVYD------STCKLLVVSSKGNAFIVEESEII 632 G G+AI ++ + + D +++ +S G+ S+ Sbjct: 614 PLGSRTAKGKAIVNILPIPQGVSVAAIMPVDRPEAEWDDLQIVFATSAGDVRRNALSDFT 673 Query: 633 ANTRKGKTFLKVSSEEKMKLVVKVTG--DHVAVVGENRKLLIFSIDQIPEMSRG------ 684 GK +K+ E + + ++ D V ++ ++ + + F + + +G Sbjct: 674 NVKSNGKIAMKLPDEHTLLVNARICSPDDDVMLITDSGRAIRFPTTDV-RVFKGRDSTGV 732 Query: 685 KGVRLQ 690 +G+RLQ Sbjct: 733 RGIRLQ 738 >gi|88596044|ref|ZP_01099281.1| DNA gyrase, A subunit [Campylobacter jejuni subsp. jejuni 84-25] gi|218562643|ref|YP_002344422.1| DNA gyrase subunit A [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|417099|sp|Q03470|GYRA_CAMJE RecName: Full=DNA gyrase subunit A gi|144206|gb|AAA23028.1| DNA gyrase A [Campylobacter jejuni] gi|88190885|gb|EAQ94857.1| DNA gyrase, A subunit [Campylobacter jejuni subsp. jejuni 84-25] gi|112360349|emb|CAL35145.1| DNA gyrase subunit A [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|284926257|gb|ADC28609.1| DNA gyrase subunit A [Campylobacter jejuni subsp. jejuni IA3902] gi|315927967|gb|EFV07289.1| DNA gyrase, A subunit [Campylobacter jejuni subsp. jejuni DFVF1099] Length = 863 Score = 409 bits (1052), Expect = e-112, Method: Compositional matrix adjust. Identities = 237/607 (39%), Positives = 377/607 (62%), Gaps = 32/607 (5%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 + +++ V + +++ YL Y++S I RA+PD RDG KPVHRRI++AM F Sbjct: 8 DSDIELVDIENSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFV 67 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSARIVG VIG+ HPHGD +VYD+LVR+AQ F RYP I+GQGNFG+IDGDSAAA RYTE Sbjct: 68 KSARIVGAVIGRYHPHGDTAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTE 127 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 A+M++++ +L+ +D+D VDF Y+ +SEP V PS+ PNLL NG+SGIAVGMAT+IP Sbjct: 128 AKMSKLSHELLKDIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPP 187 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 H++ E+ + L L+DN + S+E+++++I GPDFPTGGII ++ I+E+YR GRG +VR Sbjct: 188 HSLNELIDGLLYLLDNKDASLEEIMQFIKGPDFPTGGIIY-GKKGIIEAYRTGRGRVKVR 246 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIV 312 A+ +E+ IV+ E+PYQ K+RLIE+IAEL+ ++I + ++RDES E +R+V Sbjct: 247 AKTHIEK-KTNKDVIVIDELPYQTNKARLIEQIAELVKERQIEGISEVRDESNKEGIRVV 305 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 + K ++ ++++ ++F + ME+ F + M + + P++ L +L +L HR+ V+ Sbjct: 306 IELKREAM-SEIVLNNLFKSTTMESTFGVIMLAIH-NKEPKIFSLLELLNLFLTHRKTVI 363 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLTENQVD 429 RR+ F +Q R IL+GL IA NIDE+IA+I+N + + +V++F L+E Q + Sbjct: 364 IRRTIFELQKARARAHILEGLKIALDNIDEVIALIKNSSDNNTARDSLVAKFGLSELQAN 423 Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489 AIL+++L L LE +I++EL L+ E +++ +L S N I E++E++ F Sbjct: 424 AILDMKLGRLTGLEREKIENELAELMKEIARLEEILKSETLLENLIRDELKEIRSKF--- 480 Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS-------- 541 D+ R ++ + +I E + V I++RG+I+ + S + Sbjct: 481 -DVPR----ITQIEDDYDDIDIEDLIPNENMVVTITHRGYIKRVPSKQYEKQKRGGKGKL 535 Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDL 596 A+ + D ++ A+T D ++ ++ G K Y +P G S G+A+ LI+L Sbjct: 536 AVTTYDDDFIESFFTANTHDTLMFVTDRGQLYWLKVYKIPEG---SRTAKGKAVVNLINL 592 Query: 597 NHNQDIV 603 + I+ Sbjct: 593 QAEEKIM 599 >gi|293390066|ref|ZP_06634400.1| DNA gyrase A [Aggregatibacter actinomycetemcomitans D7S-1] gi|290950600|gb|EFE00719.1| DNA gyrase A [Aggregatibacter actinomycetemcomitans D7S-1] Length = 887 Score = 409 bits (1052), Expect = e-112, Method: Compositional matrix adjust. Identities = 254/660 (38%), Positives = 385/660 (58%), Gaps = 67/660 (10%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 +++ VSL L+ YL YA+S I RA+PD+RDG KPVHRR++ AM E G + ++K Sbjct: 6 QDITPVSLEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEGGNLYNKPYRK 65 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 SARIVG+VIGK HPHGD +VYD+LVR+AQPF RY L+ GQGNFG++DGD+ AA RYTEA Sbjct: 66 SARIVGDVIGKYHPHGDSAVYDTLVRMAQPFSLRYMLVDGQGNFGSVDGDAPAAMRYTEA 125 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 RMT++A +L +D++ V+F Y+ + P V P+K P LL NG+SGIAVGMAT+IP H Sbjct: 126 RMTKIAHELLADLDKETVNFVPNYDGSEMIPEVLPTKVPALLVNGSSGIAVGMATNIPPH 185 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 N+ E+ + LA I+N +I+I++L+ +I GPDFPT +I R+ I E+Y+ GRG VRA Sbjct: 186 NLGEVLDGCLAYIENNDITIDELMSHIPGPDFPTAALI-NGRKGIEEAYKTGRGKIYVRA 244 Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVL 313 R +E +G I+V EIPYQV K++LIEKIAE + K+I + +RDES +D +RIV+ Sbjct: 245 RAEIETDEKGRESIIVNEIPYQVNKAKLIEKIAEFVKDKKIEGISGLRDESDKDGMRIVI 304 Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373 K ++ ++++ +++ L+ M+ F +N+ L G+ P+++ L +++ ++ HRREV+ Sbjct: 305 EIKRDAVG-EVVLNNLYALTQMQVTFGINIVALDHGQ-PKLLNLKQLIEAFVLHRREVVT 362 Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSR---------- 420 RR+ F ++ R IL+GL IA N+D II +IR N + K +++R Sbjct: 363 RRTIFELRKARERTHILEGLAIALANVDPIIELIRKAPNPENAKRELLARPWQLGHVADM 422 Query: 421 ------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLA 456 + LTE Q AIL+LRL+ L L +I E LL Sbjct: 423 LAASGVDAARPEDLDEQYGIRDGLYYLTEVQAQAILDLRLQKLTNLGHDEILDEYKKLLD 482 Query: 457 EKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE 516 K+ +L S ++ I E+ +++E F+ RRT E++ A + +I Sbjct: 483 AIGKLLYILRSPERLMEVIREELEQIREQFNDP-----RRT---EITAASGDINLEDLIA 534 Query: 517 KEPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568 +E + V +S+ G+++ + + SA KE D ++ L A+T D IL S+ Sbjct: 535 QEDVVVTLSHEGYVKYQPITDYEAQRRGGKGKSATKMKEEDFIEKLLVANTHDTILCFSS 594 Query: 569 DGKAYTLPAGNL-LSGRG-HGEAIQLLIDLNHNQDI-----VTAFVYDSTCKLLVVSSKG 621 G+ Y L L + RG G I ++ LN N+ I V A+ D K +V+++ G Sbjct: 595 RGRLYWLKVYQLPQASRGARGRPIVNILPLNENERITAILPVAAYEED---KFVVMATAG 651 >gi|307249501|ref|ZP_07531489.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306858494|gb|EFM90562.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 4 str. M62] Length = 896 Score = 409 bits (1052), Expect = e-112, Method: Compositional matrix adjust. Identities = 239/606 (39%), Positives = 352/606 (58%), Gaps = 55/606 (9%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 +++ VS+ L+ YL YA+S I RA+PD+RDG KPVHRR++ +M + F K Sbjct: 6 KDITPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTFNRPHVK 65 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 SAR+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG+IDGD+ AA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRYTEV 125 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 RM ++ + +L +D++ VD+ Y+ ++ P V P+K P LL NG+SGIAVGMAT+IP H Sbjct: 126 RMQKITQELLTDLDKETVDYSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATNIPPH 185 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 N+ E+ + LA I+N +ISIE+L+ +I GPDFPTG II R+ I E+YR GRG VRA Sbjct: 186 NLNEVLDGCLAYIENEQISIEELMRFIPGPDFPTGAII-NGRKGIEEAYRTGRGKVYVRA 244 Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314 + VE +G I+VTE+PYQV K++LIEKIAEL+ K+I + I+D S + ++ Sbjct: 245 KASVETTEKGREQIIVTELPYQVNKAKLIEKIAELVKDKKIEGISGIQDHSDKKGISIVI 304 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 R ++++ ++ L+ M+ F +NM L G+ P+V+ L I++ ++ HRREV+ R Sbjct: 305 EVKRDAVGEVVLNHLYSLTQMQVTFGINMVALDHGQ-PKVLNLKQIIEAFVKHRREVVTR 363 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN------------------------- 409 R+ F ++ R IL+GL IA NID +I +IRN Sbjct: 364 RTIFELRKARERAHILEGLAIALANIDPVIELIRNSKTADEAREGLLARAWALGNVAPML 423 Query: 410 ----------EDKPKPVMV--SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457 ED P+ + V ++ L+E Q AIL LRL L LE +I E LL E Sbjct: 424 EAAGVDASRPEDLPENLGVRDGQYYLSEAQARAILELRLHRLTGLEHEKIVDEYKALLTE 483 Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517 ++ +L+S ++ I E+ +VK F RRT E++ A + +I + Sbjct: 484 IGELLRILSSAERLMEVIREELEKVKAEFGDE-----RRT---EITAASGDINMEDLIAQ 535 Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569 E + V +S+ G+++ + + SA KE D ++ L A+T D IL S+ Sbjct: 536 EDVVVTLSHAGYVKYQPLSDYEAQRRGGKGKSATKMKENDFIEKLLVANTHDTILCFSSR 595 Query: 570 GKAYTL 575 G+ Y L Sbjct: 596 GRLYQL 601 >gi|227533500|ref|ZP_03963549.1| DNA gyrase, A subunit [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|227188829|gb|EEI68896.1| DNA gyrase, A subunit [Lactobacillus paracasei subsp. paracasei ATCC 25302] Length = 873 Score = 409 bits (1052), Expect = e-112, Method: Compositional matrix adjust. Identities = 245/714 (34%), Positives = 406/714 (56%), Gaps = 57/714 (7%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 E + V+L + + +L YA+S I RA+PD+RDG KPV RRI++ M+E+G+ +K Sbjct: 6 ESRITNVNLGETMRKSFLEYAMSVIVARALPDVRDGLKPVQRRILYGMNELGVTPDKPYK 65 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSARIVG+V+GK HPHGD S+Y+ LVR+AQ F RY L+ G GNFG++DGD AAA RYTE Sbjct: 66 KSARIVGDVMGKYHPHGDSSIYEGLVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAMRYTE 125 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 ARM+++A +L+ +++D +DF+D Y+ + EPVV P++FPNLL NG +GIAVGM T+IP Sbjct: 126 ARMSKIAVEMLRDINKDTIDFQDNYDGTEKEPVVLPARFPNLLVNGATGIAVGMTTNIPP 185 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E A L+DNP+ + L++ + GPDFPTGG+++ + I +Y GRG +R Sbjct: 186 HNLSETISALHVLMDNPDATTADLMQALPGPDFPTGGVVM-GKSGIRHAYETGRGTIVLR 244 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313 + V+ G IV+TEIPY V K++++E+IA+L+ K+I + +RDES D ++ Sbjct: 245 GKVDVQTEKSGRERIVITEIPYMVNKAKMVERIADLVHEKKIDGIVTLRDESDRDGMRIV 304 Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373 R +++ +++ L+ ++T F NM + G P+V+ L IL+ +L H+ V+ Sbjct: 305 IDVRRDASASVILNNLYKLTPLQTGFSFNMVAIVNG-APKVLSLKQILQYYLDHQENVIR 363 Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDA 430 RR+ F ++ R IL+GL IA +IDEII IIR+ DK K +++ +F L++ Q A Sbjct: 364 RRTQFDLRKAKAREHILEGLRIALDHIDEIITIIRSSETGDKAKVILMDKFKLSDKQSQA 423 Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490 IL++RL L LE +++SE ++ A +L ++ I E+ ++++ F Sbjct: 424 ILDMRLVRLTGLEREKVESEYKDVEAAIADYTDILARPERVHQIIYNELLDIQKKFGD-- 481 Query: 491 DLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSLKSHSVD--------LS 541 +RRT E+ + +L+ + +IE+E + + +S+ G+++ L + + Sbjct: 482 ---KRRT---ELLVGEVLSLEDEDLIEQEDVVITLSHNGYVKRLATSEFKAQNRGGRGIQ 535 Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAY---------------TLPAGNLLSGRGH 586 ++ + D ++ + T D +L + GK Y +P NLL G G Sbjct: 536 GMNVHDDDFVERLISTSTHDVLLFFTNKGKVYRSKGYEIPEYGRTAKGIPIINLL-GVGA 594 Query: 587 GEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEI--IANTR-KGKTFLK 643 GE IQ +I+++ + + L V+ KG +V+ + + AN R G L Sbjct: 595 GEKIQTVINVHEGE--------NDDRYLFFVTQKG---VVKRTPVKEFANIRSNGLIALN 643 Query: 644 VSSEEKMKLVVKVTGDHVAVVGENRKL-LIFSIDQIPEMSRG----KGVRLQSY 692 + E+++ V+ +G ++G + + F + M R +G+RL+ + Sbjct: 644 LKDEDELNNVILTSGQDNILIGTHLGYSVTFKEQDVRSMGRSATGVRGIRLREH 697 >gi|304413453|ref|ZP_07394926.1| DNA gyrase A subunit [Candidatus Regiella insecticola LSR1] gi|304284296|gb|EFL92689.1| DNA gyrase A subunit [Candidatus Regiella insecticola LSR1] Length = 866 Score = 409 bits (1052), Expect = e-112, Method: Compositional matrix adjust. Identities = 271/747 (36%), Positives = 410/747 (54%), Gaps = 106/747 (14%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + V++ L+ YL YA+S I RA+PD+RDG KPVHRR++ AMS +G D+ A+KKSA Sbjct: 8 ITPVNIEAELKGSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSVLGNDWNKAYKKSA 67 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD +VYD++VR+AQPF RY LI GQGNFG++DGDS AA RYTE RM Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLIDGQGNFGSVDGDSPAAMRYTEIRM 127 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 ++A +L +D++ VDF Y+ + P V P++ PNLL NG+SGIAVGMAT+IP HN+ Sbjct: 128 AKIAHELLADLDKETVDFVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ E LA ID+ IS+E L+ +I GPDFPTG II R I E+YR GRG +RAR Sbjct: 188 TEVIEGCLAYIDDENISVEALMRHIPGPDFPTGAIINGGR-GIAEAYRTGRGKIYLRARA 246 Query: 257 -CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315 V + I+V EIPYQV K++LIEKIAEL+ KR+ + +RDES +D V+ Sbjct: 247 EVVIDAKTQRETIIVHEIPYQVNKAKLIEKIAELVKEKRVEGISALRDESDKDGMRVVIE 306 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 R ++++ +++ L+ ++ F +NM L G+ P+++PL IL+ +++HRREV+ RR Sbjct: 307 IKRDAVGEVVLNNLYSLTQLQITFGINMVALHAGQ-PKILPLKEILQSFVSHRREVVTRR 365 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR--------------------------- 408 + F ++ R IL+ L++A +ID II +IR Sbjct: 366 TMFELRKARDRAHILEALVVALAHIDTIIELIRHAPTAADAKNGLMENAWPLSDVDEMLK 425 Query: 409 -----------NEDKPKPVMVSR--------FSLTENQVDAILNLRLRSLRKLEEYQIKS 449 NED +P + + + LTE Q AIL+LRL+ L +E ++ Sbjct: 426 RSSGDQITIGRNEDA-RPEWLEKEFGIHDESYHLTEQQAQAILDLRLQKLTGMEHDKLLD 484 Query: 450 ELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC----EVSRA 505 E +LL + ++ S+L + ++ I E+ +KE + RRT E++ Sbjct: 485 EYKDLLIKIVELISILKTPERLMEIIKDELNAIKEQYKDP-----RRTNIIVNNLEINNE 539 Query: 506 DKATLQQAMIEKEPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHA 557 D +I +E + V +S++G+++ + + SA K D + L A Sbjct: 540 D-------LINQEDVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKGEDFIDQLLVA 592 Query: 558 HTTDRILLLSTDG-----KAYTLPAGNLLSGRG-HGEAIQLLIDLNHNQDIVTAFV---- 607 +T D IL S+ G K Y LP + RG G I L+ L N+ I TA + Sbjct: 593 NTHDTILCFSSKGSLYWMKVYQLPE----ASRGARGRPIINLLPLKENERI-TAILPVRE 647 Query: 608 YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKT-FLKVSSEEKMKLVVKVTGDHVAVVGE 666 YD+ + + ++ G IV+++ + +R K + ++ E +L+ VA+ Sbjct: 648 YDAGHHVFMATACG---IVKKTALDCFSRPRKDGIIAINLNEGDELI------GVALTDG 698 Query: 667 NRKLLIFSIDQIPEMSRGKGVRLQSYK 693 + ++++FS D GK VR K Sbjct: 699 SNEVMLFSTD-------GKAVRFSESK 718 >gi|226327847|ref|ZP_03803365.1| hypothetical protein PROPEN_01728 [Proteus penneri ATCC 35198] gi|225203551|gb|EEG85905.1| hypothetical protein PROPEN_01728 [Proteus penneri ATCC 35198] Length = 881 Score = 409 bits (1052), Expect = e-112, Method: Compositional matrix adjust. Identities = 248/647 (38%), Positives = 377/647 (58%), Gaps = 61/647 (9%) Query: 7 SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66 S S + + + V++ L+ YL YA+S I RA+PD+RDG KPVHRR++ AM+ +G Sbjct: 4 SGSMSDIAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGN 63 Query: 67 DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126 D+ +KKSAR+VG+VIGK HPHGD +VY+++VRLAQPF RY L+ GQGNFG++DGDSA Sbjct: 64 DWNKPYKKSARVVGDVIGKYHPHGDSAVYETIVRLAQPFSMRYMLVDGQGNFGSVDGDSA 123 Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186 AA RYTE RM ++A +L ++++ VDF Y+ + P V P++ PNLL NG+SGIAVG Sbjct: 124 AAMRYTEVRMAKIAHELLADLEKETVDFVPNYDGTEHIPAVMPTRIPNLLVNGSSGIAVG 183 Query: 187 MATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLG 246 MAT+IP HN+ E+ + LA +DN +I+IE+L+E+I GPDFPT II R I+++YR G Sbjct: 184 MATNIPPHNLGEVIDGCLAYVDNEDITIEELMEHITGPDFPTAAII-NGRRGILDAYRTG 242 Query: 247 RGGFRVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305 RG +RA+ +E + G I+VTEIPYQV K+RLIEKIAEL+ KRI + +RDES Sbjct: 243 RGKIYIRAQADIETDEKTGRETIIVTEIPYQVNKARLIEKIAELVKDKRIEGISGLRDES 302 Query: 306 AED-VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364 +D +RIV+ K ++ ++++ +F + M+ F +NM L G+ P+++ L I+ + Sbjct: 303 DKDGMRIVVEIKRDAVG-EVVLNHLFSQTQMQVSFGINMVALHQGQ-PKLLNLKEIISAF 360 Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVS-- 419 + HRREV+ RR+ + ++ R IL+ L +A NID +I +IR P K +++ Sbjct: 361 IRHRREVVTRRTIYELRKARDRAHILEALAVALANIDPVIEMIRQAPNPAEAKAALIAQP 420 Query: 420 ---------------------------------RFSLTENQVDAILNLRLRSLRKLEEYQ 446 ++ LTE Q AIL+LRL+ L LE + Sbjct: 421 WDLGSVSTMLERAGDSNVARPEWLEPQYGVHDGKYYLTEQQAQAILDLRLQKLTGLEHEK 480 Query: 447 IKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRAD 506 + E +LL + ++ +L S ++ I E+ +K+ ++ RRT E + AD Sbjct: 481 LLDEYRDLLLQIAELLHILRSPERLMEVIREELNAIKDQYNDP-----RRTEITE-NTAD 534 Query: 507 KATLQQAMIEKEPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAH 558 + +I +E + V +S++G+++ + + SA KE D + L A+ Sbjct: 535 INI--EDLINEENVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVAN 592 Query: 559 TTDRILLLSTDGKAYTLPAGNLL-SGRG-HGEAIQLLIDLNHNQDIV 603 T D IL S+ G+ Y + L + RG G I L+ L N+ I Sbjct: 593 THDTILCFSSRGRLYWMKVYQLPEASRGARGRPIINLLPLEQNERIT 639 >gi|55823197|ref|YP_141638.1| DNA gyrase subunit A [Streptococcus thermophilus CNRZ1066] gi|55739182|gb|AAV62823.1| DNA gyrase A subunit [Streptococcus thermophilus CNRZ1066] gi|312278614|gb|ADQ63271.1| DNA gyrase A subunit [Streptococcus thermophilus ND03] Length = 811 Score = 409 bits (1052), Expect = e-112, Method: Compositional matrix adjust. Identities = 253/711 (35%), Positives = 398/711 (55%), Gaps = 47/711 (6%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 + N+ V+L ++ ++ YA+S I RA+PD+RDG KPV RRI++ M+E+G+ K Sbjct: 3 DNNLIDVNLTSEMKTSFIDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVTPDKPHK 62 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSARI G+V+GK HPHGD S+Y+++VR+AQ + RY L+ G GNFG++DGD AAA RYTE Sbjct: 63 KSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYTE 122 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 ARM+++A +L+ ++++ VDF+D Y+ + EP+V PS+ PNLL NG +GIAVGMAT+IP Sbjct: 123 ARMSKIALEMLRDLNKNTVDFQDNYDGSEREPIVLPSRIPNLLVNGATGIAVGMATNIPP 182 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E +A ++DNPE++ +L+E + GPDFPTGG+++ + I +Y G+G +R Sbjct: 183 HNLAETIDAVKLMMDNPEVTTRELMEVLPGPDFPTGGLVM-GKSGIHRAYETGKGSIVLR 241 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312 +R +E G IVVTE PY V K+++ E I L KRI + +RDES+ E VR V Sbjct: 242 SRTEIETTKSGRERIVVTEFPYMVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGVRFV 301 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 + + R ++++ ++F L+ ++T F NM + G VP+++ L IL +++AH++EV+ Sbjct: 302 IEVR-RDASANVILNNLFKLTQLQTNFSFNMLAIEKG-VPKILSLRQILADYIAHQKEVV 359 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLTENQVD 429 RR+ F + R IL+GLLIA ++DE+I IIRN + + + +++RF LTE Q Sbjct: 360 VRRTQFDKDKAEARAHILEGLLIALDHLDEVITIIRNSQTDAEAQAELMARFELTERQSQ 419 Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489 AIL++RLR L LE +I++E D+LLA + +L ++ I E+ E K F+ + Sbjct: 420 AILDMRLRRLTGLERDKIQNEYDDLLALITDLADILAKPERVIAIIKEELDESKRKFADA 479 Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLS 541 RRT E IT +SN+G+I RS K + Sbjct: 480 -----RRTELMVGEVVSLEDEDLIEEEDIVIT--LSNKGYIKRLAQDEFRSQKRGGRGVQ 532 Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLLSGRGH 586 + D ++ + T D + ++ G+ Y LP NLL Sbjct: 533 GTGVNDDDFVRDIVSTSTHDHLYFMTNKGRVYRLKGYEIPEYGRTAKGLPIVNLLK-LDE 591 Query: 587 GEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS 646 GE IQ +I+ ++ L+ V+ +G +E+E + G LK+ Sbjct: 592 GETIQTVINAKSDE-------ASDNNHLVFVTRQGLVKRTKEAEFKNIRQNGLIALKLRE 644 Query: 647 EEKMKLVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSR-GKGVRLQSYKDG 695 +++ V G+ ++G + F D I MSR GV+ + +DG Sbjct: 645 GDELINVFLTNGNEEIIIGTKFGYSVRFKEDTIRSMSRMAAGVKGVTLRDG 695 >gi|70731664|ref|YP_261406.1| DNA gyrase subunit A [Pseudomonas fluorescens Pf-5] gi|68345963|gb|AAY93569.1| DNA gyrase, A subunit [Pseudomonas fluorescens Pf-5] Length = 889 Score = 409 bits (1052), Expect = e-112, Method: Compositional matrix adjust. Identities = 238/603 (39%), Positives = 362/603 (60%), Gaps = 57/603 (9%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 V++ L++ YL YA+S I RA+PD RDG KPVHRR+++AMSE+G D+ +KKSAR+V Sbjct: 11 VNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMSELGNDWNKPYKKSARVV 70 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG++DGD+AAA RYTE RMT++ Sbjct: 71 GDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRYTEVRMTKL 130 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A +L + ++ VD+ Y+ + P V P+K PNLL NG+SGIAVGMAT+IP HN+ E+ Sbjct: 131 AHELLADLHKETVDWVPNYDGTEMIPAVMPTKIPNLLVNGSSGIAVGMATNIPPHNLGEV 190 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 + LALIDNPE+++++L++YI GPDFPT II RE I+E+YR GRG +RAR +E Sbjct: 191 IDGCLALIDNPELTVDELMQYIPGPDFPTAAII-NGREGIIEAYRTGRGRIYMRARSIIE 249 Query: 260 EVGR--GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317 ++ + G IV+TE+PYQ+ K+RLIEKIAEL+ K++ + ++RDES +D V+ Sbjct: 250 DIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKLEGITELRDESDKDGMRVVIELR 309 Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377 R P++++ +++ + ++ F +N+ L GR P+++ L +L+ ++ HRREV+ RR+ Sbjct: 310 RGEVPEVILNNLYAQTQLQAVFGINIVALIDGR-PRILNLKDLLEAFVRHRREVVTRRTV 368 Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVS--------------- 419 F ++ R IL+G +A NID +IA+I+ P K ++S Sbjct: 369 FELRKARERGHILEGQAVALSNIDPVIALIKASPTPSEAKEALISTPWESSAVMTMVERA 428 Query: 420 -------------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEK 460 ++ L+ Q AIL LRL L LE ++ +E +L + + Sbjct: 429 GADSCRPENLDPQYGLRDGKYFLSPEQAQAILELRLHRLTGLEHEKLLAEYQEILNQIGE 488 Query: 461 IDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI 520 + +LNS + I E+ ++ + RRT + +R D TL MI +E Sbjct: 489 LIRILNSATRLMEVIREELEVIRAEYGDV-----RRTEILD-ARLD-LTLGD-MIPEEER 540 Query: 521 TVVISNRGWIRS--LKSHSVDL------SALHFKEGDSLKIALHAHTTDRILLLSTDGKA 572 V IS+ G+ ++ L ++ SA K+ D + L A++ +LL S+ GK Sbjct: 541 VVTISHGGYAKTQPLAAYQAQRRGGKGKSATGVKDEDYIAHLLVANSHTTLLLFSSKGKV 600 Query: 573 YTL 575 Y L Sbjct: 601 YWL 603 >gi|118574922|gb|ABL07038.1| DNA gyrase subunit A [Arcobacter butzleri] Length = 860 Score = 409 bits (1052), Expect = e-112, Method: Compositional matrix adjust. Identities = 243/636 (38%), Positives = 387/636 (60%), Gaps = 43/636 (6%) Query: 10 NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69 N +++ V++ +++ YL Y++S I RA+PD +DG KPVHRRI++AM ++ + Sbjct: 3 NLFENQDIINVNIEDSVKASYLDYSMSVIIGRALPDAKDGLKPVHRRILYAMHDLSITSK 62 Query: 70 AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129 +A+KKSARIVG+VIGK HPHGD SVYD+LVR+AQ F R PL+ GQGNFG+IDGD+AAA Sbjct: 63 SAYKKSARIVGDVIGKYHPHGDISVYDALVRMAQNFSLRAPLVDGQGNFGSIDGDNAAAM 122 Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189 RYTEARMT++AE +L+ +D+D V+F Y++ EP V P++ P LL NG+ GIAVGMAT Sbjct: 123 RYTEARMTRIAEEVLRDLDKDTVNFVPNYDDTMKEPSVLPTRVPTLLLNGSEGIAVGMAT 182 Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249 IP HN+ E+ EA L LID PE + ++L++++ GPDFPTGG I R I+++Y GRG Sbjct: 183 KIPPHNLGELLEAILYLIDTPEATADELMQFVQGPDFPTGGTIF-GRRGIIDAYNTGRGR 241 Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-ED 308 R+RA+ +E + IV+ E+PYQV K+RLIE IA L K+I + ++RDES E Sbjct: 242 VRIRAKHHIETKAK-KEIIVIDELPYQVNKARLIELIANLAKDKQIDGISEVRDESDREG 300 Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368 +R+V+ K ++ ++++ +++ + MET F + + + + P+V L IL +L+HR Sbjct: 301 IRVVIELKKDAM-SEIVLNNLYKSTPMETTFGIIL-LAVYNKEPKVFNLPQILNIFLSHR 358 Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTE 425 + V+ RR+ F ++ R IL+GL IA NIDE++ IIR N+ + K + +RF L+ Sbjct: 359 KTVIIRRTIFDLEKAKARAHILEGLKIAVDNIDEVVRIIRSSSNDAEAKESLENRFDLSA 418 Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485 Q AIL++RL L L+ ++++E L+ +++++L S ++ I E+ E+KE Sbjct: 419 IQSQAILDMRLGRLTGLQRDKLEAEYQELMILIAELEAILRSEEKLNEIIREELTEIKEK 478 Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545 FS R T E S D+ ++ +I EP+ V I++ G+++ + + + Sbjct: 479 FSND------RKTEIEDS-YDEIDIED-LIPNEPMVVTITHNGYVKRVPIKAYEKQ---- 526 Query: 546 KEGDSLKIALHAH------------TTDRILLLSTDG-----KAYTLPAGNLLSGRGHGE 588 K G K+A+ H T D ++ ++ G K Y +P G+ ++ G+ Sbjct: 527 KRGGKGKVAVTTHDDDFIERFFVSNTHDTLMFVTNMGQLYWLKVYKIPEGSRIA---KGK 583 Query: 589 AIQLLIDLNHNQ---DIVTAFVYDSTCKLLVVSSKG 621 A+ LI+L ++ +I+ +D + L+ + G Sbjct: 584 AVVNLINLRPDEKIMEIIPTPDFDESKSLVFFTRNG 619 >gi|72080859|ref|YP_287917.1| DNA gyrase subunit A [Mycoplasma hyopneumoniae 7448] Length = 868 Score = 409 bits (1052), Expect = e-112, Method: Compositional matrix adjust. Identities = 234/658 (35%), Positives = 382/658 (58%), Gaps = 34/658 (5%) Query: 13 VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72 + +N+ + + ++ +L Y++S I RA+PD+RDG KPVHRRI++ M+E+G+ G ++ Sbjct: 57 ITDNISPIKIEDEMKASFLDYSMSVIVSRALPDVRDGLKPVHRRILYTMAELGITSGTSY 116 Query: 73 KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132 KKSARIVG+V+GK HPHGD SVY+S+VR+AQPF RYPL+ G GNFG+IDGD AAA RYT Sbjct: 117 KKSARIVGDVLGKYHPHGDASVYESMVRMAQPFSLRYPLVDGHGNFGSIDGDEAAAMRYT 176 Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192 EAR+++++ +++G+ ++ VDFR Y+ + EP V P+KFPNLL +G SGIAVGM T IP Sbjct: 177 EARLSKISNKMIEGLKKNTVDFRPNYDASEVEPEVLPAKFPNLLVSGVSGIAVGMMTKIP 236 Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252 HN+ EI + + NP+I I +L+ + GPDFPTG I ++ I ++Y G+G F + Sbjct: 237 PHNLGEIIHSFIIFAKNPKIEINELISSLPGPDFPTGATIY-GKKGINQAYLTGKGSFII 295 Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312 RA+ +E + G I+ EIPY+V+K +IEK+A L+ K+I ++D+RDES+ V Sbjct: 296 RAKAKIENLNSGRSRIIFYEIPYEVKKPAIIEKVAFLVRNKKILGIKDVRDESSRHGIRV 355 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 +F + P++++ ++ +D++ + +NM L G VP++M L I +L H++E+ Sbjct: 356 VFEIKKGFSPEIILNKLYHSTDLQINYSINMLALVNG-VPKLMNLAQIFNYYLEHQKEIN 414 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVD 429 R +F ++ ++ +L+G+ +A NIDE+I II++ + + ++L Q Sbjct: 415 LRSLNFDLEKATEKLNVLEGIKVAVENIDEVIKIIKSSKSDQAAQEKLAHTYNLNPGQTK 474 Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489 AI+ +RL L L ++ +E++ L E +I S+++S K+ + I I + K + ++ Sbjct: 475 AIIEMRLGRLTSLAIEKLNNEIEELKVEISEIKSIIDSPKKLIDLI---IEQHKNVVAQF 531 Query: 490 TDLGRRRTTFCEVSRADKATL---QQAMIEKEPITVV---------ISNRGWIRSLKSHS 537 D RR E+ D+ L +Q +I V + NRG I +L S+ Sbjct: 532 GD-PRRSEIIPEIDCLDEEDLIADEQVIISLTQNNYVKKMALDEYRLQNRGGIGTLASN- 589 Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL--LID 595 H+K+ D LK +T +L++S+ K + L A + G G+ I + LI Sbjct: 590 ------HYKD-DELKSLCITNTLSDLLIISSSAKIFKLRAHQIPDGSKQGKGIPILNLIK 642 Query: 596 LNHNQDIVTAFVYDSTCK---LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM 650 L N+ I ++ L+ VS+ GN S T+ GK LK++ + + Sbjct: 643 LEKNESISNLIPWNQEYDNHWLITVSAFGNIKKTALSAFRNITKNGKIALKLAENDYL 700 >gi|320120272|gb|EFE27931.2| DNA gyrase, A subunit [Filifactor alocis ATCC 35896] Length = 812 Score = 409 bits (1052), Expect = e-112, Method: Compositional matrix adjust. Identities = 260/751 (34%), Positives = 424/751 (56%), Gaps = 32/751 (4%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 V L+ +E+ Y+ YA+S I RA+PD+RDG KPVHRRI+++M + L ++KSA IV Sbjct: 13 VDLKHEMEQSYIEYAMSVIVGRALPDVRDGLKPVHRRILYSMGQNNLTPDKPYRKSATIV 72 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+V+GK HPHGD +VYD+LV++AQ F RYPL+ G GNFG+IDGDSAAA RYTE+RM ++ Sbjct: 73 GDVLGKYHPHGDTAVYDALVKMAQDFSMRYPLVDGHGNFGSIDGDSAAAMRYTESRMEKL 132 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 + +L+ ++++ VD Y+E + EP V P+++PNLL NG++GIAVGMATSIP HN+ E+ Sbjct: 133 SMEMLRDLNKETVDMVPNYDENEWEPSVLPARYPNLLVNGSNGIAVGMATSIPPHNLGEV 192 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 +A + LIDN + ++E +L++I GPDFPTG I+ S++++YR GRG RA+ E Sbjct: 193 IDAVVELIDNEDATLEDILKHIKGPDFPTGAHIM-GNSSMLQAYRTGRGKVVQRAKTSFE 251 Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319 E+ G IVVTEIPYQV K+RL+EKIAEL+ KRI + I DES ++ R Sbjct: 252 EMSGGKTRIVVTEIPYQVNKARLVEKIAELMKDKRIDGITHIGDESNRKGMRIVIELRRD 311 Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379 ++PD+++ +F S ++ F + M L + +P+V+ L+ +L+ +L H+ EV+ RR+ F Sbjct: 312 VNPDIVLNQLFKFSPLQQVFSIIMLAL-VNNIPKVLTLEQMLRLYLKHQEEVVTRRTQFD 370 Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAIIRNE-DKPKPVMVSRFSLTENQVDAILNLRLRS 438 ++ R+ +++GLL A +IDE+IAIIR+ ++ RF +E Q AIL+++LR Sbjct: 371 LKKAQDRIHLVEGLLKAIDHIDEVIAIIRSSYSDAMERLMERFDFSEIQAKAILDMQLRR 430 Query: 439 LRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTT 498 L+ LE+ +++ E +L + + +L+ + I EI E+K + RRTT Sbjct: 431 LQGLEKEKLEDEQKDLQQKIDYYQEILSDRSLLLSIIKEEILEIKAKYGNE-----RRTT 485 Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSVDLSALHFKEGDS 550 F S D + MI + +TV +++ G+I+ + K ++++ ++ D Sbjct: 486 FL-ASYEDIDI--KDMIPDDEVTVTLTHLGYIKRVGIDTYKTQKRGGKGIASMSTRDEDF 542 Query: 551 LKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAFV- 607 + L +++ + G+ Y L + S G I ++ L + + T Sbjct: 543 VDKLLLTSNHSKVIFFTNMGRIYRLNTYEIPESSRTAKGTNIVNILPLEDGEKVNTMLSI 602 Query: 608 ---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAV 663 S+ +++ + KG E + R G + + ++++ V G+ ++ Sbjct: 603 REEQASSGFVVMCTRKGIMKKTPLEEFQRSNRNGLIAISLKEDDELIGVELTDGNCNIIC 662 Query: 664 VGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKIC--EGLTWIDSAGRSYN 720 V N K ++F I M R +GVR + ++G +++ I E I S R Y Sbjct: 663 VARNGKAIMFDESDIRSMGRTAQGVRAMNLEEG--DEIVSMMIADPEKDVLIISE-RGYG 719 Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751 + L RGG GS K ++G+ + Sbjct: 720 KRTPIAEYNLQTRGGKGSRTYKITEKTGRLV 750 >gi|116628018|ref|YP_820637.1| DNA gyrase subunit A [Streptococcus thermophilus LMD-9] gi|116101295|gb|ABJ66441.1| DNA gyrase subunit A [Streptococcus thermophilus LMD-9] Length = 817 Score = 409 bits (1052), Expect = e-112, Method: Compositional matrix adjust. Identities = 253/711 (35%), Positives = 398/711 (55%), Gaps = 47/711 (6%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 + N+ V+L ++ ++ YA+S I RA+PD+RDG KPV RRI++ M+E+G+ K Sbjct: 3 DNNLIDVNLTSEMKTSFIDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVTPDKPHK 62 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSARI G+V+GK HPHGD S+Y+++VR+AQ + RY L+ G GNFG++DGD AAA RYTE Sbjct: 63 KSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYTE 122 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 ARM+++A +L+ ++++ VDF+D Y+ + EP+V PS+ PNLL NG +GIAVGMAT+IP Sbjct: 123 ARMSKIALEMLRDLNKNTVDFQDNYDGSEREPIVLPSRIPNLLVNGATGIAVGMATNIPP 182 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E +A ++DNPE++ +L+E + GPDFPTGG+++ + I +Y G+G +R Sbjct: 183 HNLAETIDAVKLMMDNPEVTTRELMEVLPGPDFPTGGLVM-GKSGIHRAYETGKGSIVLR 241 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312 +R +E G IVVTE PY V K+++ E I L KRI + +RDES+ E VR V Sbjct: 242 SRTEIETTKSGRERIVVTEFPYMVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGVRFV 301 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 + + R ++++ ++F L+ ++T F NM + G VP+++ L IL +++AH++EV+ Sbjct: 302 IEVR-RDASANVILNNLFKLTQLQTNFSFNMLAIEKG-VPKILSLRQILADYIAHQKEVV 359 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLTENQVD 429 RR+ F + R IL+GLLIA ++DE+I IIRN + + + +++RF LTE Q Sbjct: 360 VRRTQFDKDKAEARAHILEGLLIALDHLDEVITIIRNSQTDAEAQAELMARFELTERQSQ 419 Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489 AIL++RLR L LE +I++E D+LLA + +L ++ I E+ E K F+ + Sbjct: 420 AILDMRLRRLTGLERDKIQNEYDDLLALITDLADILAKPERVIAIIKEELDESKRKFADA 479 Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLS 541 RRT E IT +SN+G+I RS K + Sbjct: 480 -----RRTELMVGEVVSLEDEDLIEEEDIVIT--LSNKGYIKRLAQDEFRSQKRGGRGVQ 532 Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLLSGRGH 586 + D ++ + T D + ++ G+ Y LP NLL Sbjct: 533 GTGVNDDDFVRDIVSTSTHDHLYFMTNKGRVYRLKGYEIPEYGRTAKGLPIVNLLK-LDE 591 Query: 587 GEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS 646 GE IQ +I+ ++ L+ V+ +G +E+E + G LK+ Sbjct: 592 GETIQTVINAKSDE-------ASDNNHLVFVTRQGLVKRTKEAEFKNIRQNGLIALKLRE 644 Query: 647 EEKMKLVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSR-GKGVRLQSYKDG 695 +++ V G+ ++G + F D I MSR GV+ + +DG Sbjct: 645 GDELINVFLTNGNEEIIIGTKFGYSVRFKEDTIRSMSRMAAGVKGVTLRDG 695 >gi|118574924|gb|ABL07039.1| DNA gyrase subunit A [Arcobacter butzleri] Length = 860 Score = 409 bits (1052), Expect = e-112, Method: Compositional matrix adjust. Identities = 240/615 (39%), Positives = 378/615 (61%), Gaps = 40/615 (6%) Query: 10 NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69 N +++ V++ +++ YL Y++S I RA+PD +DG KPVHRRI++AM ++ + Sbjct: 3 NLFENQDIINVNIEDSVKASYLDYSMSVIIGRALPDAKDGLKPVHRRILYAMHDLSITSK 62 Query: 70 AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129 +A+KKSARIVG+VIGK HPHGD SVYD+LVR+AQ F R PL+ GQGNFG+IDGD+AAA Sbjct: 63 SAYKKSARIVGDVIGKYHPHGDTSVYDALVRMAQNFSLRAPLVDGQGNFGSIDGDNAAAM 122 Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189 RYTEARMT++AE +L+ +D+D V+F Y++ EP V P++ P LL NG+ GIAVGMAT Sbjct: 123 RYTEARMTRIAEEVLRDLDKDTVNFVPNYDDTMKEPSVLPTRVPTLLLNGSEGIAVGMAT 182 Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249 IP HN+ E+ EA L LID PE + ++L++++ GPDFPTGG I R I+++Y GRG Sbjct: 183 KIPPHNLGELLEAILYLIDTPEATADELMQFVQGPDFPTGGTIF-GRRGIIDAYNTGRGR 241 Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-ED 308 R+RA+ +E + IV+ E+PYQV K+RLIE IA L K+I + ++RDES E Sbjct: 242 VRIRAKHHIETKAK-KEIIVIDELPYQVNKARLIELIANLAKDKQIDGISEVRDESDREG 300 Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368 +R+V+ K ++ ++++ +++ + MET F + + + + P+V L IL +L+HR Sbjct: 301 IRVVIELKKDAM-SEIVLNNLYKSTPMETTFGIIL-LAVYNKEPKVFNLPQILNIFLSHR 358 Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTE 425 + V+ RR+ F ++ R IL+GL IA NIDE++ IIR N+ + K + RF L+ Sbjct: 359 KTVIIRRTIFDLEKAKARAHILEGLKIAVDNIDEVVRIIRSSSNDAEAKESLEKRFDLSA 418 Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485 Q AIL++RL L L+ ++++E L+ +++++L S ++ I E+ E+KE Sbjct: 419 IQSQAILDMRLGRLTGLQRDKLEAEYQELMILIAELEAILRSEEKLNEIIREELTEIKEK 478 Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545 FS R T E S D+ ++ +I EP+ V I++ G+++ + + + Sbjct: 479 FSND------RKTEIEDS-YDEIDIED-LIPNEPMVVTITHNGYVKRVPIKAYEKQ---- 526 Query: 546 KEGDSLKIALHAH------------TTDRILLLSTDG-----KAYTLPAGNLLSGRGHGE 588 K G K+A+ H T D ++ ++ G K Y +P G+ ++ G+ Sbjct: 527 KRGGKGKVAVTTHDDDFIERFFVSNTHDTLMFVTNMGQLYWLKVYKIPEGSRIA---KGK 583 Query: 589 AIQLLIDLNHNQDIV 603 A+ LI+L ++ I+ Sbjct: 584 AVVNLINLRPDEKIM 598 >gi|114570423|ref|YP_757103.1| DNA gyrase subunit A [Maricaulis maris MCS10] gi|114340885|gb|ABI66165.1| DNA gyrase subunit A [Maricaulis maris MCS10] Length = 946 Score = 409 bits (1052), Expect = e-112, Method: Compositional matrix adjust. Identities = 252/695 (36%), Positives = 377/695 (54%), Gaps = 61/695 (8%) Query: 2 GVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61 G DN + + + +++ ++ YL YA+S I RAIPD RDG KPVHRRI++ M Sbjct: 18 GADNTGGQPPALPDGIGNIAIEDEMKSSYLDYAMSVIVSRAIPDARDGLKPVHRRILYTM 77 Query: 62 SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121 E G +++K A VG+V+G+ HPHGDQ+VYDSLVRLAQ + R PLI GQGNFG++ Sbjct: 78 HENGQTHEKSYRKCATAVGDVMGRYHPHGDQAVYDSLVRLAQDWSMRVPLIDGQGNFGSV 137 Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181 DGD AAYRYTEARM +VA+ +L +D+D V+F D Y+ E EPVV P+++PNLL NG Sbjct: 138 DGDPPAAYRYTEARMQKVAQSLLADIDKDTVNFVDNYSAERQEPVVLPARYPNLLVNGAG 197 Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241 GIAVGMAT++P HN+ E+ + LAL++NP ++ +LL+YI GPDFPTGG+I+ R Sbjct: 198 GIAVGMATNVPPHNLGEVIDGTLALLENPSLTEGELLDYIPGPDFPTGGLIL-GRTGARN 256 Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301 + GRG +R+R +EEV + I+V EIPYQV K+ +IEKIA+L+ K+I + D+ Sbjct: 257 AVLTGRGSIVMRSRTSIEEVRKDRMAIIVHEIPYQVNKASMIEKIADLVRDKKIEGIADL 316 Query: 302 RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361 RDES + V+ R + D+++ +F S M+T F NM L GR PQ++ IL Sbjct: 317 RDESDRNGMRVVIELKRDANADVILNQLFRWSPMQTSFGANMLSLVGGR-PQLLGALDIL 375 Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK------- 414 KE+L R EV+ RR+ F + R ++ GL +A NIDE+IA+IR P Sbjct: 376 KEFLRFREEVVARRAKFELNKARDRAHVIIGLALAVANIDEVIALIRKAPNPATAREQLM 435 Query: 415 ----PVM------------------VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELD 452 P M + LTE Q AIL LRL L L ++ +E Sbjct: 436 ARDWPAMDVAPLVELVADPRSMLRDDNTLRLTEEQARAILELRLNRLTGLGREELGNEAK 495 Query: 453 NLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ 512 L + + LL S ++ + I E+ EV+E ++ RR+ F + A+ + Sbjct: 496 TLADQIADLLDLLRSRQRVLDIIRDELTEVRENYATP-----RRSEFVD---AELDFEDE 547 Query: 513 AMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRIL 564 +I ++ + V +++ G+ R+ + S + K+ D + A T +L Sbjct: 548 DLIPRDEMVVTVTHGGYAKRTALSDYRAQRRGGKGRSGMATKDEDFIATLFVASTHAPLL 607 Query: 565 LLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI--VTAFVYDSTC----K 613 S G K + LP G + G+A+ L+ L + I + A D + Sbjct: 608 FFSNRGMVYKTKTWRLPLG---APNTRGKALINLLPLEQGETITSIMALPEDESTWADMN 664 Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE 648 ++ ++KG + S+ + R GK +K+ E+ Sbjct: 665 VMFATNKGTVRRNKLSDFVQVNRNGKIAMKLEEED 699 >gi|28542821|gb|AAO42742.1| DNA gyrase subunit A [Campylobacter jejuni] Length = 852 Score = 409 bits (1052), Expect = e-112, Method: Compositional matrix adjust. Identities = 237/607 (39%), Positives = 378/607 (62%), Gaps = 32/607 (5%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 + +++ V + +++ YL Y++S I RA+PD RDG KPVHRRI++AM F Sbjct: 8 DSDIELVDIENSIKGSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFV 67 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSARIVG VIG+ HPHGD +VYD+LVR+AQ F RYP I+GQGNFG+IDGDSAAA RYTE Sbjct: 68 KSARIVGAVIGRYHPHGDTAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTE 127 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 A+M++++ +L+ +D+D VDF Y+ +SEP V PS+ PNLL NG+SGIAVGMAT+IP Sbjct: 128 AKMSKLSHELLKDIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPP 187 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 H++ E+ + L L+D+ ++S+E+++++I GPDFPTGGII ++ I+E+YR GRG +VR Sbjct: 188 HSLNELIDGLLYLLDSKDVSLEEIMQFIKGPDFPTGGIIY-GKKGIIEAYRTGRGRVKVR 246 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIV 312 A+ +E+ IV+ E+PYQ K+RLIE+IAEL+ K+I + ++RDES E +R+V Sbjct: 247 AKTHIEK-KTNKDVIVIDELPYQTNKARLIEQIAELVKEKQIEGISEVRDESNKEGIRVV 305 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 + K ++ ++++ ++F + ME+ F + M + + P++ L +L +L HR+ V+ Sbjct: 306 IELKREAM-SEIVLNNLFKSTTMESTFGVIMLAIH-NKEPKIFSLLELLNLFLTHRKTVI 363 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLTENQVD 429 RR+ F +Q R IL+GL IA NIDE+IA+I+N + + +V++F L+E Q + Sbjct: 364 IRRTIFELQKARARAHILEGLKIALDNIDEVIALIKNSSDNNTARDSLVAKFGLSELQAN 423 Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489 AIL+++L L LE +I++EL L+ E +++ +L S N I E++E++ F Sbjct: 424 AILDMKLGRLTGLEREKIENELAELMKEIARLEEILKSETLLENLIRDELKEIRSKF--- 480 Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS-------- 541 D+ R ++ + +I E + V I++RG+I+ + S + Sbjct: 481 -DVPR----ITQIEDDYDDIDIEDLIPNENMVVTITHRGYIKRVPSKQYEKQKRGGKGKL 535 Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDL 596 A+ + D ++ A+T D ++ ++ G K Y +P G S G+A+ LI+L Sbjct: 536 AVTTYDDDFIESFFTANTHDTLMFVTDRGQLYWLKVYKIPEG---SRTAKGKAVVNLINL 592 Query: 597 NHNQDIV 603 + I+ Sbjct: 593 QAEEKIM 599 >gi|300814727|ref|ZP_07094975.1| DNA gyrase, A subunit [Peptoniphilus sp. oral taxon 836 str. F0141] gi|300511114|gb|EFK38366.1| DNA gyrase, A subunit [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 809 Score = 409 bits (1052), Expect = e-112, Method: Compositional matrix adjust. Identities = 255/688 (37%), Positives = 402/688 (58%), Gaps = 29/688 (4%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 E + V + + YL Y++S I RA+PD+RDG KPVHRRI++ MSE+ L G ++K Sbjct: 8 ENGIFDVDISKKMRSSYLDYSMSVIVARALPDVRDGLKPVHRRILYGMSELNLVSGGSYK 67 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSAR+VG+V+GK HPHGD S+Y++ VRLAQ F RYPL+ GQGNFGNIDGD AAA RYTE Sbjct: 68 KSARLVGDVMGKYHPHGDSSIYEATVRLAQDFNMRYPLVDGQGNFGNIDGDGAAAMRYTE 127 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 +MT++AE +L+ +++D V+F ++ + EP + PS+FPNLL NG+SGIAVGMAT++P Sbjct: 128 VKMTKLAEEMLRDINKDTVEFVPNFDNDQEEPSILPSRFPNLLVNGSSGIAVGMATNMPP 187 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E+ + + ID+ +ISI L E I GPDFPTG +I+ R+ I ++Y+ GRG VR Sbjct: 188 HNMNEVIDGIVKYIDDDDISISDLQEVIKGPDFPTGALIM-GRDGINKAYKTGRGKITVR 246 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE-DVRIV 312 A + E +G I++TE+PYQV KS L+ KIAEL K I + I D S + +RIV Sbjct: 247 AVAEIVEPKKGREQILITELPYQVNKSALVMKIAELAKDKIIDGISKITDSSNKRGIRIV 306 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 + K + + ++++ ++ + ++ + + L GR PQ++ L +++ ++ H+ EV+ Sbjct: 307 IDLK-KDANANVVLNKLYKETQLQITYGIINLALVNGR-PQILNLKELIRYYVDHQVEVI 364 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVD 429 RR+ F + + R I++GL IA NID +I IIR+ K V+ FSLT+ Q Sbjct: 365 TRRTRFDLNKAEARAHIVEGLFIALDNIDRVIKIIRSSKDDKEVIEKFDREFSLTQIQSQ 424 Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489 AIL++RL+ L LE ++++E D LL + ++ +L + I E+ E+K+ + Sbjct: 425 AILDMRLKRLTGLEREKLQNEYDKLLEDIKRFKEILENNHVLMELIKTELLEIKDKY--- 481 Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSVDLS 541 G R T + S +D + +I++E + + ++ G+I+ + K ++ Sbjct: 482 ---GDLRRTVIKSSESDIDI--EDIIKEEDVIITLTQFGYIKRMPEGTYKPQKRGGRGIT 536 Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEAIQLLIDLNHN 599 AL KE D +K T DR+L + GK Y L A + +GR G A+ L++L+ Sbjct: 537 ALTQKEDDFVKELFVTSTHDRLLFFTNKGKVYRLKAFEVPEAGRNAKGTAVVNLLNLDKG 596 Query: 600 QDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV 656 + I + +D LL+V+ KG E + G +K+ ++K+ V V Sbjct: 597 EKITSVINVEEFDPDHYLLMVTEKGLIKKTSNKEFKNIRQNGLIGIKLRDDDKLISVHLV 656 Query: 657 TGD-HVAVVGENRKLLIFSIDQIPEMSR 683 GD + +V + K + FS D++ + R Sbjct: 657 RGDEEIILVTKEGKSIRFSTDELRDQGR 684 >gi|303249555|ref|ZP_07335762.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307251818|ref|ZP_07533720.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|302651629|gb|EFL81778.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306860725|gb|EFM92736.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 6 str. Femo] Length = 896 Score = 409 bits (1052), Expect = e-112, Method: Compositional matrix adjust. Identities = 239/606 (39%), Positives = 352/606 (58%), Gaps = 55/606 (9%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 +++ VS+ L+ YL YA+S I RA+PD+RDG KPVHRR++ +M + F K Sbjct: 6 KDITPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTFNRPHVK 65 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 SAR+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG+IDGD+ AA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRYTEV 125 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 RM ++ + +L +D++ VD+ Y+ ++ P V P+K P LL NG+SGIAVGMAT+IP H Sbjct: 126 RMQKITQELLTDLDKETVDYSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATNIPPH 185 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 N+ E+ + LA I+N +ISIE+L+ +I GPDFPTG II R+ I E+YR GRG VRA Sbjct: 186 NLNEVLDGCLAYIENEQISIEELMRFIPGPDFPTGAII-NGRKGIEEAYRTGRGKVYVRA 244 Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314 + VE +G I+VTE+PYQV K++LIEKIAEL+ K+I + I+D S + ++ Sbjct: 245 KASVETTEKGREQIIVTELPYQVNKAKLIEKIAELVKDKKIEGISGIQDHSDKKGISIVI 304 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 R ++++ ++ L+ M+ F +NM L G+ P+V+ L I++ ++ HRREV+ R Sbjct: 305 EVKRDAVGEVVLNHLYSLTQMQVTFGINMVALDHGQ-PKVLNLKQIIEAFVKHRREVVTR 363 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN------------------------- 409 R+ F ++ R IL+GL IA NID +I +IRN Sbjct: 364 RTIFELRKARERAHILEGLAIALANIDPVIELIRNSKTADEAREGLLARAWALGNVAPML 423 Query: 410 ----------EDKPKPVMV--SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457 ED P+ + V ++ L+E Q AIL LRL L LE +I E LL E Sbjct: 424 EAAGVDASRPEDLPENLGVRDGQYYLSEAQARAILELRLHRLTGLEHEKIVDEYKALLTE 483 Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517 ++ +L+S ++ I E+ +VK F RRT E++ A + +I + Sbjct: 484 IGELLRILSSAERLMEVIREELEKVKAEFGDE-----RRT---EITAASGDINMEDLIAQ 535 Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569 E + V +S+ G+++ + + SA KE D ++ L A+T D IL S+ Sbjct: 536 EDVVVTLSHAGYVKYQPLSDYEAQRRGGKGKSATKMKEDDFIEKLLVANTHDTILCFSSR 595 Query: 570 GKAYTL 575 G+ Y L Sbjct: 596 GRLYQL 601 >gi|228477604|ref|ZP_04062237.1| DNA gyrase, A subunit [Streptococcus salivarius SK126] gi|228250748|gb|EEK09946.1| DNA gyrase, A subunit [Streptococcus salivarius SK126] Length = 822 Score = 409 bits (1052), Expect = e-112, Method: Compositional matrix adjust. Identities = 255/713 (35%), Positives = 405/713 (56%), Gaps = 47/713 (6%) Query: 12 LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71 + + N+ V+L ++ ++ YA+S I RA+PD+RDG KPV RRI++ M+E+G+ Sbjct: 1 MQDNNLIDVNLTSEMKTSFIDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVTPDKP 60 Query: 72 FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131 KKSARI G+V+GK HPHGD S+Y+++VR+AQ + RY L+ G GNFG++DGD AAA RY Sbjct: 61 HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRY 120 Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191 TEARM+++A +L+ ++++ VDF+D Y+ + EP+V PS+ PNLL NG +GIAVGMAT+I Sbjct: 121 TEARMSKIALEMLRDLNKNTVDFQDNYDGSEREPIVLPSRIPNLLVNGATGIAVGMATNI 180 Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251 P HN+ E +A ++DNPE++ +L+E + GPDFPTGG+++ + I +Y G+G Sbjct: 181 PPHNLAETIDAVKLMMDNPEVTTRELMEVLPGPDFPTGGLVM-GKSGIHRAYETGKGSIV 239 Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVR 310 +R+R +E G IVVTE PY V K+++ E I L KRI + +RDES+ E VR Sbjct: 240 LRSRTEIETTKSGRERIVVTEFPYMVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGVR 299 Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370 V+ + R ++++ ++F L+ ++T F NM + G VP+++ L IL +++AH++E Sbjct: 300 FVIEVR-RDASANVILNNLFKLTQLQTNFSFNMLAIEKG-VPKILSLRQILADYIAHQQE 357 Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLTENQ 427 V+ RR+ F + R IL+GLLIA +DE+I IIRN + + + +++RF LTE Q Sbjct: 358 VVVRRTQFDKDKAEARAHILEGLLIALDYLDEVITIIRNSQTDAEAQADLMARFELTERQ 417 Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487 AIL++RLR L LE +I++E ++LLA + +L ++ I E+ E K F+ Sbjct: 418 SQAILDMRLRRLTGLERDKIQNEYNDLLALIADLADILEKPERVIAIIKEELDESKRKFA 477 Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVD 539 D R EV + + +IE+E + + +SN+G+I RS K Sbjct: 478 ---DARRTELMVGEVV----SLEDEDLIEEEDVVITLSNKGYIKRLAQDEFRSQKRGGRG 530 Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLLSGR 584 + + D ++ + T D + ++ G+ Y LP NLL Sbjct: 531 VQGTGVNDDDFVRDIVSTSTHDHLYFMTNKGRVYRLKGYEIPEYGRTAKGLPIVNLLK-L 589 Query: 585 GHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV 644 GE IQ +I+ ++ L+ V+ +G +E+E + G LK+ Sbjct: 590 DEGETIQTVINAKSDE-------ASENNHLVFVTRQGLVKRTKEAEFKNIRQNGLIALKL 642 Query: 645 SSEEKMKLVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSR-GKGVRLQSYKDG 695 +++ V TG+ V+G + F D I MSR GV+ + +DG Sbjct: 643 REGDELINVFLTTGNEEIVIGTKFGYSVRFKEDTIRSMSRMAAGVKGVTLRDG 695 >gi|161511097|ref|NP_771336.2| DNA gyrase subunit A [Bradyrhizobium japonicum USDA 110] Length = 909 Score = 409 bits (1051), Expect = e-112, Method: Compositional matrix adjust. Identities = 254/727 (34%), Positives = 393/727 (54%), Gaps = 62/727 (8%) Query: 1 MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60 M D+ +++ VS+ +++ YL YA+S I RA+PD RDG KPVHRRI+++ Sbjct: 1 MADDDKPGDQPAQPSDIRPVSIFEEMKKSYLDYAMSVIVARALPDARDGLKPVHRRILYS 60 Query: 61 MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120 M+E G + KSAR+VG+VIGK HPHGDQS+YD++VR+AQ F R PLI GQGNFG+ Sbjct: 61 MNEQGHTPDKKYVKSARVVGDVIGKYHPHGDQSIYDAMVRMAQDFSMRVPLIDGQGNFGS 120 Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180 +DGD AAYRYTEAR+T+ A +L +D+D VDF+ Y+ ++EP V P+KFPNLL NG Sbjct: 121 VDGDPPAAYRYTEARLTKAALALLADIDKDTVDFQPNYDNNETEPSVLPAKFPNLLVNGA 180 Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240 GIAVGMAT+IP HN+ E+ +A +ALIDNP ++I++L+ + GPDFPTGG+I+ R I Sbjct: 181 GGIAVGMATNIPPHNLGEVIDACVALIDNPALTIDELINIVPGPDFPTGGVIL-GRAGIR 239 Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300 +Y LGRG +R + +E + + +++TEIPYQV K+ ++E+IAEL+ K+I + D Sbjct: 240 AAYHLGRGSIVMRGKVAIETIRKEREALIITEIPYQVNKATMVERIAELVKEKKIEGIGD 299 Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360 +RDES D V+ R D+++ ++ + ++T F +NM L GR P++M L + Sbjct: 300 LRDESDRDGYRVVIELKRDAVADVVLNQLYRFTPLQTSFGVNMVALDSGR-PRIMHLKDL 358 Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVM 417 L ++ R V+ RR+ F + R IL GL IA NIDE+I +IR P + + Sbjct: 359 LAIFVDFRERVVTRRTKFLLAKARDRAHILVGLAIAVANIDEMIRVIRTSPDPTTARDTL 418 Query: 418 VSR--------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451 +SR L+ Q AIL+LRL+ L L +I+ EL Sbjct: 419 MSRDWPARDVEDMLTLIDDPRHRISPDGTIRLSMEQARAILDLRLQRLTALGRDEIRDEL 478 Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511 D L E +L S ++ I E+ EVK F+ RRT E + Sbjct: 479 DKLAGEIADYLDILRSRERVLGIIKTELAEVKAEFATP-----RRTVIME---QEGEVED 530 Query: 512 QAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRI 563 + +I++E + V +S+ G++ R+ + + + ++ D + A T + Sbjct: 531 EDLIQREDMVVTVSHAGYVKRVPLSAYRAQRRGGKGRAGMQTRDEDFVSRLFVASTHTPV 590 Query: 564 LLLSTDGKAYT-----LPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY---DST---C 612 L S+ G+ Y LP + + G+A+ ++ L + I T +ST Sbjct: 591 LFFSSRGQVYKEKVWRLP---MAAPNARGKALINILPLEQGERITTIMPLPEDESTWGNL 647 Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLL 671 ++ ++ GN + S+ + R G +K+ E + V T D V + G + + Sbjct: 648 DVMFATTGGNVRRNKLSDFVDVRRSGIIAMKLDENEAIVDVQICTERDDVLLTGAGGQCI 707 Query: 672 IFSIDQI 678 F + + Sbjct: 708 RFPVTDV 714 >gi|57237914|ref|YP_179162.1| DNA gyrase subunit A [Campylobacter jejuni RM1221] gi|57166718|gb|AAW35497.1| DNA gyrase, A subunit [Campylobacter jejuni RM1221] gi|315058470|gb|ADT72799.1| DNA gyrase subunit A [Campylobacter jejuni subsp. jejuni S3] Length = 862 Score = 409 bits (1051), Expect = e-112, Method: Compositional matrix adjust. Identities = 237/607 (39%), Positives = 378/607 (62%), Gaps = 32/607 (5%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 + +++ V + +++ YL Y++S I RA+PD RDG KPVHRRI++AM F Sbjct: 8 DSDIELVDIENSIKGSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFV 67 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSARIVG VIG+ HPHGD +VYD+LVR+AQ F RYP I+GQGNFG+IDGDSAAA RYTE Sbjct: 68 KSARIVGAVIGRYHPHGDTAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTE 127 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 A+M++++ +L+ +D+D VDF Y+ +SEP V PS+ PNLL NG+SGIAVGMAT+IP Sbjct: 128 AKMSKLSHELLKDIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPP 187 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 H++ E+ + L L+D+ ++S+E+++++I GPDFPTGGII ++ I+E+YR GRG +VR Sbjct: 188 HSLNELIDGLLYLLDSKDVSLEEIMQFIKGPDFPTGGIIY-GKKGIIEAYRTGRGRVKVR 246 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIV 312 A+ +E+ IV+ E+PYQ K+RLIE+IAEL+ K+I + ++RDES E +R+V Sbjct: 247 AKTHIEK-KTNKDVIVIDELPYQTNKARLIEQIAELVKEKQIEGISEVRDESNKEGIRVV 305 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 + K ++ ++++ ++F + ME+ F + M + + P++ L +L +L HR+ V+ Sbjct: 306 IELKREAM-SEIVLNNLFKSTTMESTFGVIMLAIH-NKEPKIFSLLELLNLFLTHRKTVI 363 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLTENQVD 429 RR+ F +Q R IL+GL IA NIDE+IA+I+N + + +V++F L+E Q + Sbjct: 364 IRRTIFELQKARARAHILEGLKIALDNIDEVIALIKNSSDNNTARDSLVAKFGLSELQAN 423 Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489 AIL+++L L LE +I++EL L+ E +++ +L S N I E++E++ F Sbjct: 424 AILDMKLGRLTGLEREKIENELAELMKEIARLEEILKSETLLENLIRDELKEIRSKF--- 480 Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS-------- 541 D+ R ++ + +I E + V I++RG+I+ + S + Sbjct: 481 -DVPR----ITQIEDDYDDIDIEDLIPNENMVVTITHRGYIKRVPSKQYEKQKRGGKGKL 535 Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDL 596 A+ + D ++ A+T D ++ ++ G K Y +P G S G+A+ LI+L Sbjct: 536 AVTTYDDDFIESFFTANTHDTLMFVTDRGQLYWLKVYKIPEG---SRTAKGKAVVNLINL 592 Query: 597 NHNQDIV 603 + I+ Sbjct: 593 QAEEKIM 599 >gi|253681297|ref|ZP_04862095.1| DNA gyrase, A subunit [Clostridium botulinum D str. 1873] gi|253562535|gb|EES91986.1| DNA gyrase, A subunit [Clostridium botulinum D str. 1873] Length = 842 Score = 409 bits (1051), Expect = e-112, Method: Compositional matrix adjust. Identities = 232/574 (40%), Positives = 349/574 (60%), Gaps = 23/574 (4%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 N+ + + ++ Y+ YA+S I RA+PD+RDG KPVHRRI+++M E+GL ++KS Sbjct: 6 NIVPIDISKEMQRSYIDYAMSVIVGRALPDVRDGLKPVHRRILYSMHELGLTPEKGYRKS 65 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 ARIVG+V+GK HPHGD +VYD+LVR+AQ F RY L+ G GNFG++DGD AAA RYTEA+ Sbjct: 66 ARIVGDVLGKYHPHGDTAVYDALVRMAQDFSIRYTLVDGHGNFGSVDGDGAAAMRYTEAK 125 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 MT+V +L+ ++++ VDF ++ E+ EP V PS+FPNLL NG+SGIAVGMAT+IP HN Sbjct: 126 MTKVTLELLRDINKNTVDFIPNFDGEEKEPSVLPSRFPNLLVNGSSGIAVGMATNIPPHN 185 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 + E+ IDNPEIS+ +L+ I GPDFPT GIIV + I ++Y GRG +R+R Sbjct: 186 LTEVINGINKFIDNPEISVAELMTEIKGPDFPTSGIIV-GKSGIRKAYETGRGKVILRSR 244 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLF 314 +EE +G IVVTEIPYQV K+RLIE IA L+ KRI + D+RDES E +RIV+ Sbjct: 245 AEIEE-DKGKSRIVVTEIPYQVNKARLIENIANLVKDKRINGISDLRDESDREGMRIVIE 303 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K R + ++++ ++ + M+ F + M L G P+V+ L +L+ ++ + EV+ R Sbjct: 304 LK-RDANANVVLNQLYKHTKMQDSFGIIMLALVNGE-PKVLSLKEVLRHYIKFQEEVITR 361 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAI 431 R+ F + R IL+GL IA +IDE+I +IR + K ++S+F L+E Q AI Sbjct: 362 RTQFDLDKALARAHILEGLRIALDHIDEVIRLIRGSKTTGEAKEGLMSKFGLSEKQATAI 421 Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491 L+++L+ L LE +I+ E L+ + +L+ I E+ E+K T Sbjct: 422 LDMKLQRLTGLEREKIEEEYAKLMENVKYFRQILSDKSLLLKIIKDELNEIK------TK 475 Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSVDLSAL 543 G R + + ++ +IE++ + + +++ G+I+ L K + A+ Sbjct: 476 YGDERKSEIIQDEGNDIDIED-LIEEKDVVITLTHAGYIKRLPVETYSAQKRGGRGIQAM 534 Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPA 577 KE D ++ + A T D IL + G+ Y L A Sbjct: 535 TTKEDDFVEHIITASTHDNILFFTNLGRVYQLKA 568 >gi|206578949|ref|YP_002237364.1| DNA gyrase, A subunit [Klebsiella pneumoniae 342] gi|290508495|ref|ZP_06547866.1| DNA gyrase, A subunit [Klebsiella sp. 1_1_55] gi|206568007|gb|ACI09783.1| DNA gyrase, A subunit [Klebsiella pneumoniae 342] gi|289777889|gb|EFD85886.1| DNA gyrase, A subunit [Klebsiella sp. 1_1_55] Length = 877 Score = 409 bits (1051), Expect = e-112, Method: Compositional matrix adjust. Identities = 266/727 (36%), Positives = 403/727 (55%), Gaps = 67/727 (9%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + V++ L+ YL YA+S I RA+PD+RDG KPVHRR+++AM+ +G D+ A+KKSA Sbjct: 8 ITPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG+IDGDSAAA RYTE R+ Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 ++A ++ ++++ VDF D Y+ + P V P+K PNLL NG SGIAVGMAT+IP HN+ Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTERIPDVMPTKIPNLLVNGASGIAVGMATNIPPHNL 187 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ LA +D+ +ISIE L+ +I GPDFPT II R I E+YR GRG +RAR Sbjct: 188 TEVINGCLAYVDDEDISIEGLMAHIPGPDFPTAAII-NGRRGIEEAYRTGRGKVYIRARA 246 Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314 VE + G I+V EIPYQV K+RLIEKIAEL+ KR+ + +RDES +D +RIV+ Sbjct: 247 EVEVDAKSGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K ++ ++++ +++ + ++ F +NM L G+ P++M L I+ ++ HRREV+ R Sbjct: 307 VKRDAVG-EVVLNNLYSQTQLQVSFGINMVALHHGQ-PKIMNLKDIIAAFVRHRREVVTR 364 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVS------------ 419 R+ F ++ R IL+ L +A NID II +IR P K +V+ Sbjct: 365 RTIFELRKARDRAHILEALAVALANIDPIIELIRRAPTPAEAKTALVAQAWDLGNVAAML 424 Query: 420 ----------------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457 ++ LTE Q AIL+LRL+ L LE ++ E LL + Sbjct: 425 ERAGDDAARPEWLEPEFGVRDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQ 484 Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517 ++ +L S + I E+ +++ F G R T + AD + +I + Sbjct: 485 IAELLHILGSADRLMEVIREELELIRDQF------GDERRTEITANSADINI--EDLINQ 536 Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569 E + V +S++G+++ + + SA KE D + L A+T D IL S+ Sbjct: 537 EDVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSR 596 Query: 570 GKAYTLPAGNLL-SGRG-HGEAIQLLIDLNHNQDIVTAFV----YDSTCKLLVVSSKGNA 623 G+ Y + L + RG G I L+ L ++ I TA + Y+ + + ++ G Sbjct: 597 GRLYWMKVYQLPEASRGARGRPIVNLLPLEADERI-TAILPVREYEEGVNVFMATASGTV 655 Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMS 682 +E G + ++ +++ V +G D V + K++ F D + M Sbjct: 656 KKTALTEFSRPRSAGIIAVNLNEGDELIGVDLTSGQDEVMLFSAAGKVVRFKEDAVRAMG 715 Query: 683 R-GKGVR 688 R GVR Sbjct: 716 RTATGVR 722 >gi|118574926|gb|ABL07040.1| DNA gyrase subunit A [Arcobacter butzleri] Length = 860 Score = 409 bits (1051), Expect = e-112, Method: Compositional matrix adjust. Identities = 243/636 (38%), Positives = 387/636 (60%), Gaps = 43/636 (6%) Query: 10 NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69 N +++ V++ +++ YL Y++S I RA+PD +DG KPVHRRI++AM ++ + Sbjct: 3 NLFENQDIINVNIEDSVKASYLDYSMSVIIGRALPDAKDGLKPVHRRILYAMHDLSITSK 62 Query: 70 AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129 +A+KKSARIVG+VIGK HPHGD SVYD+LVR+AQ F R PL+ GQGNFG+IDGD+AAA Sbjct: 63 SAYKKSARIVGDVIGKYHPHGDTSVYDALVRMAQNFSLRAPLVDGQGNFGSIDGDNAAAM 122 Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189 RYTEARMT++AE +L+ +D+D V+F Y++ EP V P++ P LL NG+ GIAVGMAT Sbjct: 123 RYTEARMTRIAEEVLRDLDKDTVNFVPNYDDTMKEPSVLPTRVPTLLLNGSEGIAVGMAT 182 Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249 IP HN+ E+ EA L LID PE + ++L++++ GPDFPTGG I R I+++Y GRG Sbjct: 183 KIPPHNLGELLEAILYLIDIPEATADELMQFVQGPDFPTGGTIF-GRRGIIDAYNTGRGR 241 Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-ED 308 R+RA+ +E + IV+ E+PYQV K+RLIE IA L K+I + ++RDES E Sbjct: 242 VRIRAKHHIETKAK-KEIIVIDELPYQVNKARLIELIANLAKDKQIDGISEVRDESDREG 300 Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368 +R+V+ K ++ ++++ +++ + MET F + + + + P+V L IL +L+HR Sbjct: 301 IRVVIELKKDAM-SEIVLNNLYKSTPMETTFGIIL-LAVYNKEPKVFNLPQILNIFLSHR 358 Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTE 425 + V+ RR+ F ++ R IL+GL IA NIDE++ IIR N+ + K + +RF L+ Sbjct: 359 KTVIIRRTIFDLEKAKARAHILEGLKIAVDNIDEVVRIIRSSSNDAEAKESLETRFDLSA 418 Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485 Q AIL++RL L L+ ++++E L+ +++++L S ++ I E+ E+KE Sbjct: 419 IQSQAILDMRLGRLTGLQRDKLEAEYQELMILIAELEAILRSEEKLNEIIREELTEIKEK 478 Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545 FS R T E S D+ ++ +I EP+ V I++ G+++ + + + Sbjct: 479 FSND------RKTEIEDS-YDEIDIED-LIPNEPMVVTITHNGYVKRVPIKAYEKQ---- 526 Query: 546 KEGDSLKIALHAH------------TTDRILLLSTDG-----KAYTLPAGNLLSGRGHGE 588 K G K+A+ H T D ++ ++ G K Y +P G+ ++ G+ Sbjct: 527 KRGGKGKVAVTTHDDDFIERFFVSNTHDTLMFVTNMGQLYWLKVYKIPEGSRIA---KGK 583 Query: 589 AIQLLIDLNHNQ---DIVTAFVYDSTCKLLVVSSKG 621 A+ LI+L ++ +I+ +D + L+ + G Sbjct: 584 AVVNLINLRPDEKIMEIIPTPDFDESKSLVFFTRNG 619 >gi|55821284|ref|YP_139726.1| DNA gyrase subunit A [Streptococcus thermophilus LMG 18311] gi|55737269|gb|AAV60911.1| DNA gyrase A subunit [Streptococcus thermophilus LMG 18311] Length = 811 Score = 409 bits (1051), Expect = e-112, Method: Compositional matrix adjust. Identities = 253/711 (35%), Positives = 404/711 (56%), Gaps = 47/711 (6%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 + N+ V+L ++ ++ YA+S I RA+PD+RDG KPV RRI++ M+E+G+ K Sbjct: 3 DNNLIDVNLTSEMKTSFIDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVTPDKPHK 62 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSARI G+V+GK HPHGD S+Y+++VR+AQ + RY L+ G GNFG++DGD AAA RYTE Sbjct: 63 KSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYTE 122 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 ARM+++A +L+ ++++ VDF+D Y+ + EP+V PS+ PNLL NG +GIAVGMAT+IP Sbjct: 123 ARMSKIALEMLRDLNKNTVDFQDNYDGSEREPIVLPSRIPNLLVNGATGIAVGMATNIPP 182 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E +A ++DNPE++ +L+E + GPDFPTGG+++ + I +Y G+G +R Sbjct: 183 HNLAETIDAVKLMMDNPEVTTRELMEVLPGPDFPTGGLVM-GKSGIHRAYETGKGSIVLR 241 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312 +R +E G IVVTE PY V K+++ E I L KRI + +RDES+ E VR V Sbjct: 242 SRTEIETTKSGRERIVVTEFPYMVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGVRFV 301 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 + + R ++++ ++F L+ ++T F NM + G VP+++ L IL +++AH++EV+ Sbjct: 302 IEVR-RDASANVILNNLFKLTQLQTNFSFNMLAIEKG-VPKILSLRQILADYIAHQKEVV 359 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLTENQVD 429 RR+ F + R IL+GLLIA ++DE+I IIRN + + + +++RF LTE Q Sbjct: 360 VRRTQFDKDKAEARAHILEGLLIALDHLDEVITIIRNSQTDAEAQAELMARFELTERQSQ 419 Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489 AIL++RLR L LE +I++E D+L+A + +L ++ I E+ E K F+ Sbjct: 420 AILDMRLRRLTGLERDKIQNEYDDLIALITDLADILAKPERVIAIIKEELDESKRKFA-- 477 Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLS 541 D R EV + + +IE+E + + +SN+G+I RS K + Sbjct: 478 -DARRTELMVGEVV----SLEDEDLIEEEDVVITLSNKGYIKRLAQDEFRSQKRGGRGVQ 532 Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLLSGRGH 586 + D ++ + T D + ++ G+ Y LP NLL Sbjct: 533 GTGVNDDDFVRDIVSTSTHDHLYFMTNKGRVYRLKGYEIPEYGRTAKGLPIVNLLK-LDE 591 Query: 587 GEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS 646 GE IQ +I+ ++ L+ V+ +G +E+E + G LK+ Sbjct: 592 GETIQTVINAKSDE-------ASDNNHLVFVTRQGLVKRTKEAEFKNIRQNGLIALKLRE 644 Query: 647 EEKMKLVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSR-GKGVRLQSYKDG 695 +++ V G+ ++G + F D I MSR GV+ + +DG Sbjct: 645 GDELINVFLTNGNEEIIIGTKFGYSVRFKEDTIRSMSRMAAGVKGVTLRDG 695 >gi|238895767|ref|YP_002920503.1| DNA gyrase subunit A [Klebsiella pneumoniae NTUH-K2044] gi|262043282|ref|ZP_06016413.1| DNA gyrase subunit A [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|330000608|ref|ZP_08303751.1| DNA gyrase, A subunit [Klebsiella sp. MS 92-3] gi|238548085|dbj|BAH64436.1| DNA gyrase subunit A [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|259039381|gb|EEW40521.1| DNA gyrase subunit A [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|328537950|gb|EGF64129.1| DNA gyrase, A subunit [Klebsiella sp. MS 92-3] Length = 877 Score = 409 bits (1051), Expect = e-111, Method: Compositional matrix adjust. Identities = 266/727 (36%), Positives = 403/727 (55%), Gaps = 67/727 (9%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + V++ L+ YL YA+S I RA+PD+RDG KPVHRR+++AM+ +G D+ A+KKSA Sbjct: 8 ITPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG+IDGDSAAA RYTE R+ Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 ++A ++ ++++ VDF D Y+ + P V P+K PNLL NG SGIAVGMAT+IP HN+ Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTERIPDVMPTKIPNLLVNGASGIAVGMATNIPPHNL 187 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ LA +D+ +ISIE L+ +I GPDFPT II R I E+YR GRG +RAR Sbjct: 188 TEVINGCLAYVDDEDISIEGLMAHIPGPDFPTAAII-NGRRGIEEAYRTGRGKVYIRARA 246 Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314 VE + G I+V EIPYQV K+RLIEKIAEL+ KR+ + +RDES +D +RIV+ Sbjct: 247 EVEVDAKSGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K ++ ++++ +++ + ++ F +NM L G+ P++M L I+ ++ HRREV+ R Sbjct: 307 VKRDAVG-EVVLNNLYSQTQLQVSFGINMVALHHGQ-PKIMNLKDIIAAFVRHRREVVTR 364 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVS------------ 419 R+ F ++ R IL+ L +A NID II +IR P K +V+ Sbjct: 365 RTIFELRKARDRAHILEALAVALANIDPIIELIRRAPTPAEAKTALVAQAWDLGNVAAML 424 Query: 420 ----------------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457 ++ LTE Q AIL+LRL+ L LE ++ E LL + Sbjct: 425 ERAGDDAARPEWLEPEFGVRDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQ 484 Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517 ++ +L S + I E+ +++ F G R T + AD + +I + Sbjct: 485 IAELLHILGSADRLMEVIREELELIRDQF------GDERRTEITANSADINI--EDLINQ 536 Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569 E + V +S++G+++ + + SA KE D + L A+T D IL S+ Sbjct: 537 EDVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSR 596 Query: 570 GKAYTLPAGNLL-SGRG-HGEAIQLLIDLNHNQDIVTAFV----YDSTCKLLVVSSKGNA 623 G+ Y + L + RG G I L+ L ++ I TA + Y+ + + ++ G Sbjct: 597 GRLYWMKVYQLPEASRGARGRPIVNLLPLEADERI-TAILPVREYEEGVNVFMATASGTV 655 Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMS 682 +E G + ++ +++ V +G D V + K++ F D + M Sbjct: 656 KKTALTEFSRPRSAGIIAVNLNEGDELIGVDLTSGQDEVMLFSAAGKVVRFKEDAVRAMG 715 Query: 683 R-GKGVR 688 R GVR Sbjct: 716 RTATGVR 722 >gi|197285591|ref|YP_002151463.1| DNA gyrase subunit A [Proteus mirabilis HI4320] gi|194683078|emb|CAR43604.1| DNA gyrase subunit A [Proteus mirabilis HI4320] Length = 877 Score = 409 bits (1051), Expect = e-111, Method: Compositional matrix adjust. Identities = 247/636 (38%), Positives = 373/636 (58%), Gaps = 61/636 (9%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + V++ L+ YL YA+S I RA+PD+RDG KPVHRR++ AM+ +G D+ +KKSA Sbjct: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSA 67 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD +VY+++VRLAQPF RY L+ GQGNFG++DGDSAAA RYTE RM Sbjct: 68 RVVGDVIGKYHPHGDSAVYETIVRLAQPFSMRYMLVDGQGNFGSVDGDSAAAMRYTEVRM 127 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 ++A +L ++++ VDF Y+ ++ P V P++ PNLL NG+SGIAVGMAT+IP HN+ Sbjct: 128 AKIAHELLADLEKETVDFVPNYDGTENIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ + LA +DN +I+IE+L+EYI GPDFPT II R I+++YR GRG +RA+ Sbjct: 188 GEVIDGCLAYVDNEDITIEELMEYITGPDFPTAAII-NGRRGILDAYRTGRGKIYIRAQA 246 Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314 +E + G I+VTEIPYQV K+RLIEKIAEL+ KRI + +RDES +D +RIV+ Sbjct: 247 DIETDEKTGRETIIVTEIPYQVNKARLIEKIAELVKDKRIEGISGLRDESDKDGMRIVVE 306 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K ++ ++++ +F + M+ F +NM L G+ P+++ L I+ ++ HRREV+ R Sbjct: 307 IKRDAVG-EVVLNHLFSQTQMQVSFGINMVALHQGQ-PKLLNLKEIIAAFIRHRREVVTR 364 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVS------------ 419 R+ F ++ R IL+ L +A NID +I +IR P K +++ Sbjct: 365 RTIFELRKARDRAHILEALAVALANIDPVIELIRQAPTPAEAKAALIAQPWDLGSVSAML 424 Query: 420 -----------------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLA 456 ++ LTE Q AIL+LRL+ L LE ++ E LL Sbjct: 425 ERAGDSNVARPEWLEPQFGVHDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYRELLL 484 Query: 457 EKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE 516 + ++ +L S ++ + I E+ +K ++ RRT E + AD + +I Sbjct: 485 QIAELLHILRSPERLMDVIREELTAIKTQYNDP-----RRTEITE-NTADINI--EDLIN 536 Query: 517 KEPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568 +E + V +S++G+++ + + SA KE D + L A+T D IL S+ Sbjct: 537 EENVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSS 596 Query: 569 DGKAYTLPAGNLL-SGRG-HGEAIQLLIDLNHNQDI 602 G+ Y + L + RG G I L+ L ++ I Sbjct: 597 RGRLYWMKVYQLPEASRGARGRPIINLLPLEQDERI 632 >gi|144575501|gb|AAZ53894.2| DNA gyrase subunit A [Mycoplasma hyopneumoniae 7448] Length = 853 Score = 409 bits (1051), Expect = e-111, Method: Compositional matrix adjust. Identities = 234/658 (35%), Positives = 382/658 (58%), Gaps = 34/658 (5%) Query: 13 VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72 + +N+ + + ++ +L Y++S I RA+PD+RDG KPVHRRI++ M+E+G+ G ++ Sbjct: 42 ITDNISPIKIEDEMKASFLDYSMSVIVSRALPDVRDGLKPVHRRILYTMAELGITSGTSY 101 Query: 73 KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132 KKSARIVG+V+GK HPHGD SVY+S+VR+AQPF RYPL+ G GNFG+IDGD AAA RYT Sbjct: 102 KKSARIVGDVLGKYHPHGDASVYESMVRMAQPFSLRYPLVDGHGNFGSIDGDEAAAMRYT 161 Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192 EAR+++++ +++G+ ++ VDFR Y+ + EP V P+KFPNLL +G SGIAVGM T IP Sbjct: 162 EARLSKISNKMIEGLKKNTVDFRPNYDASEVEPEVLPAKFPNLLVSGVSGIAVGMMTKIP 221 Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252 HN+ EI + + NP+I I +L+ + GPDFPTG I ++ I ++Y G+G F + Sbjct: 222 PHNLGEIIHSFIIFAKNPKIEINELISSLPGPDFPTGATIY-GKKGINQAYLTGKGSFII 280 Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312 RA+ +E + G I+ EIPY+V+K +IEK+A L+ K+I ++D+RDES+ V Sbjct: 281 RAKAKIENLNSGRSRIIFYEIPYEVKKPAIIEKVAFLVRNKKILGIKDVRDESSRHGIRV 340 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 +F + P++++ ++ +D++ + +NM L G VP++M L I +L H++E+ Sbjct: 341 VFEIKKGFSPEIILNKLYHSTDLQINYSINMLALVNG-VPKLMNLAQIFNYYLEHQKEIN 399 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVD 429 R +F ++ ++ +L+G+ +A NIDE+I II++ + + ++L Q Sbjct: 400 LRSLNFDLEKATEKLNVLEGIKVAVENIDEVIKIIKSSKSDQAAQEKLAHTYNLNPGQTK 459 Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489 AI+ +RL L L ++ +E++ L E +I S+++S K+ + I I + K + ++ Sbjct: 460 AIIEMRLGRLTSLAIEKLNNEIEELKVEISEIKSIIDSPKKLIDLI---IEQHKNVVAQF 516 Query: 490 TDLGRRRTTFCEVSRADKATL---QQAMIEKEPITVV---------ISNRGWIRSLKSHS 537 D RR E+ D+ L +Q +I V + NRG I +L S+ Sbjct: 517 GD-PRRSEIIPEIDCLDEEDLIADEQVIISLTQNNYVKKMALDEYRLQNRGGIGTLASN- 574 Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL--LID 595 H+K+ D LK +T +L++S+ K + L A + G G+ I + LI Sbjct: 575 ------HYKD-DELKSLCITNTLSDLLIISSSAKIFKLRAHQIPDGSKQGKGIPILNLIK 627 Query: 596 LNHNQDIVTAFVYDSTCK---LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM 650 L N+ I ++ L+ VS+ GN S T+ GK LK++ + + Sbjct: 628 LEKNESISNLIPWNQEYDNHWLITVSAFGNIKKTALSAFRNITKNGKIALKLAENDYL 685 >gi|254498050|ref|ZP_05110810.1| DNA gyrase, subunit A, type II topoisomerase [Legionella drancourtii LLAP12] gi|254352715|gb|EET11490.1| DNA gyrase, subunit A, type II topoisomerase [Legionella drancourtii LLAP12] Length = 871 Score = 409 bits (1051), Expect = e-111, Method: Compositional matrix adjust. Identities = 254/668 (38%), Positives = 382/668 (57%), Gaps = 72/668 (10%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 V V++ L++ YL YA+S I RA+PD+RDG KPVHRR++ AMSE+G D+ +KKSA Sbjct: 8 VLPVNIEDELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELGNDWNKPYKKSA 67 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG++DGD+ AA RYTE RM Sbjct: 68 RVVGDVIGKYHPHGDTAVYDTIVRMAQPFSMRYMLVDGQGNFGSVDGDAPAAMRYTEVRM 127 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 ++VA +L +D++ VDF Y+E + PVV PS+ PNLL NG+SGIAVGMAT+IP HN+ Sbjct: 128 SKVAHALLADLDKETVDFSPNYDETEFAPVVLPSRVPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ A +AL+DNPE+S+++++E I GPDFPT II R I++ YR G+G +RAR Sbjct: 188 TEVVNACIALVDNPELSLDEIMEIIPGPDFPTAAII-NGRAGIIQGYRTGKGRVVIRART 246 Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315 +E + I++ E+PYQV K+RL+E+IAEL+ K+I + +RDES + V+ Sbjct: 247 EIETDKDTNRQAIIIHELPYQVNKARLVERIAELVRDKKIEGISGLRDESDKQGMRVVIE 306 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 R+ D+++ +++ + M+ F +NM L G+ P+ + L IL+ ++ HRREV+ RR Sbjct: 307 IKRNEVADVILNNLYAHTQMQNVFGINMVALVDGQ-PRTLNLKQILEYFIKHRREVVTRR 365 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP------------KPVMV----- 418 + F ++ R +L+GL IA NIDE+IA+I+ P +P MV Sbjct: 366 TLFELKKARARAHLLEGLGIALANIDEMIALIKQSPTPQDAKEGLLAKAWQPGMVKSMLE 425 Query: 419 --------------------SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458 + + L+ Q AIL LRL L LE+ +I E + LL Sbjct: 426 RAGSNASRPDDLAAEFGLSDAGYRLSAAQAQAILELRLHRLTALEQDKILGEFEELLILI 485 Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518 +++ +L S ++ I E+ E+K T G R T S+ D + +I +E Sbjct: 486 KELLDILASPERLMQVIRDELLEIK------TQFGDERRTEITASQEDLTI--EDLITEE 537 Query: 519 PITVVISNRGWIR--SLKSHSVDL------SALHFKEGDSLKIALHAHTTDRILLLSTDG 570 + V +S++G+++ L ++ SA + K+ D + + A T D +L S G Sbjct: 538 NVVVTLSHQGYVKYQPLTAYQAQRRGGKGKSATNVKDEDFVSRLVIASTHDTLLCFSNHG 597 Query: 571 -----KAYTLPAGNLLS-GR--------GHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLV 616 KAY LP + +S GR GE I ++ + Q+ +V+ +T V Sbjct: 598 KLYWLKAYQLPLASRISRGRPIINILPLAEGEEINAMLPVREYQE--GFYVFMATRNGTV 655 Query: 617 VSSKGNAF 624 NAF Sbjct: 656 KKVPLNAF 663 >gi|291320523|ref|YP_003515787.1| DNA gyrase subunit A [Mycoplasma agalactiae] gi|290752858|emb|CBH40833.1| DNA gyrase subunit A [Mycoplasma agalactiae] Length = 919 Score = 409 bits (1051), Expect = e-111, Method: Compositional matrix adjust. Identities = 216/508 (42%), Positives = 330/508 (64%), Gaps = 14/508 (2%) Query: 30 YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89 +L YA+S I RA+PD RDG KPVHRRI++ MSE+G+ G +KSARIVG+V+GK HPH Sbjct: 88 FLDYAMSVIVSRALPDARDGLKPVHRRILYDMSELGITSGTQHRKSARIVGDVLGKYHPH 147 Query: 90 GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDE 149 GD SVY+++VR+AQ F RYPLI G GNFG+IDGD AAA RYTEARM++VA L+L+G+ + Sbjct: 148 GDSSVYEAMVRMAQDFSMRYPLIDGHGNFGSIDGDQAAAMRYTEARMSKVAALMLEGIKK 207 Query: 150 DAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDN 209 D VDF D Y+ + EP V PS+FPNLL +G SGIAVGMATSIP HN+ E +A +AL N Sbjct: 208 DTVDFVDNYDATEKEPSVLPSRFPNLLVSGGSGIAVGMATSIPPHNLAETIDATIALAKN 267 Query: 210 PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIV 269 PEISI +++E++ GPDFPTG +I+ ++ I E+Y G+G VR+ +E + G I+ Sbjct: 268 PEISISEIMEFLPGPDFPTGAMIMGTK-GIKEAYETGKGSISVRSIAKIEHLQNGKSRII 326 Query: 270 VTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKNRSLDPDLLMES 328 V+EIPY+++K+ +IEKIA+L+ K I + D+RDES + +RI++ K + P++++ Sbjct: 327 VSEIPYEIKKTLIIEKIAQLMKDKTIEGIADLRDESNRNGIRIIIDIKKGEV-PEIILNK 385 Query: 329 IFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVE 388 ++ + +++ + +N L G P+++ + L+ +L H+ V+ RR F + + R+ Sbjct: 386 LYRQTPLQSNYNVNFVALVDGE-PKLLNIKYALEVYLKHQENVVTRRLRFDLNKANDRMH 444 Query: 389 ILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEY 445 IL+GL IA NIDE+I II++ + + + +RF L+E Q AI+++RL L L Sbjct: 445 ILEGLKIAVENIDEVIKIIKSSKTDQDAQSNLSARFDLSEKQTKAIVDMRLGRLTGLAVD 504 Query: 446 QIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRA 505 + E+ NL AE E+I ++L + + I E+ E+K ++ RRT + A Sbjct: 505 GMIEEMQNLAAEIERITNILANRDLLIDLIIDELTEIKNKYAD-----ERRTVIDKNISA 559 Query: 506 DKATLQQAMIEKEPITVVISNRGWIRSL 533 + + +I K I + S +G+++ + Sbjct: 560 --SINDEDLISKRDIVITTSTKGYVKRI 585 >gi|71279745|ref|YP_269051.1| DNA gyrase, A subunit [Colwellia psychrerythraea 34H] gi|71145485|gb|AAZ25958.1| DNA gyrase, A subunit [Colwellia psychrerythraea 34H] Length = 908 Score = 409 bits (1051), Expect = e-111, Method: Compositional matrix adjust. Identities = 240/602 (39%), Positives = 354/602 (58%), Gaps = 56/602 (9%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 V++ L+ YL YA+S I RA+PD+RDG KPVHRR++ AM +G D+ A+KKSAR+V Sbjct: 11 VNIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMDVLGNDWNKAYKKSARVV 70 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG++DGDSAAA RYTE RM+++ Sbjct: 71 GDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRMSKI 130 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A IL +D++ VDF Y+ + P V P++ PNLL NGTSGIAVGMAT+IP HN+ E+ Sbjct: 131 AHSILADLDKETVDFVPNYDGTEHIPAVMPTRVPNLLVNGTSGIAVGMATNIPPHNLTEV 190 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 A LALIDN E++ E++LE+I GPDFPT GII R I E+YR GRG ++RAR ++ Sbjct: 191 INACLALIDNSELTFEEILEHIPGPDFPTAGII-SGRAGIEEAYRTGRGKIKIRARASID 249 Query: 260 -EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318 G I+V E+PYQV K+RLIEK+AEL+ KR+ + +RDES +D ++ R Sbjct: 250 VHETTGKETIIVHELPYQVNKARLIEKMAELVKDKRLEGISALRDESDKDGMRMVIEIKR 309 Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378 ++++ +++ L+ M+ F LNM L+ G+ P++ + +L+ ++ HRREV+ RR+ F Sbjct: 310 GEVGEVVLNNLYKLTQMQVSFGLNMVALTNGQ-PKIFNIKEMLEAFVLHRREVVTRRTIF 368 Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV----------------MVSR-- 420 ++ R IL+GL IA NID II +I+N + K M+S Sbjct: 369 ELRKARDRAHILEGLSIALANIDPIIEMIKNSNNRKESEEKLISQGWELGNVANMLSEAG 428 Query: 421 -------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKI 461 + LT Q AI++L+L L +E +I SE LL ++ Sbjct: 429 NDAARPEWLEPEYGIRDGLYYLTAEQAKAIVDLQLYKLSGMEHDKILSEYKALLDLIAEL 488 Query: 462 DSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPIT 521 +L + + ++ CE E+ + + G R T E++ A + +I +E + Sbjct: 489 MHILAT-PARLMEVICE-----ELVAIRDEFGDERRT--EITNASHDLSLEDLITEEDVV 540 Query: 522 VVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573 V +S+ G+++ + + +A KE D ++ L A+T D IL S GK Y Sbjct: 541 VTLSHEGYVKYQVLSDYEAQRRGGKGKAATKMKEEDFIERLLVANTHDTILCFSDRGKLY 600 Query: 574 TL 575 L Sbjct: 601 WL 602 >gi|88859277|ref|ZP_01133917.1| DNA gyrase, subunit A, type II topoisomerase [Pseudoalteromonas tunicata D2] gi|88818294|gb|EAR28109.1| DNA gyrase, subunit A, type II topoisomerase [Pseudoalteromonas tunicata D2] Length = 899 Score = 409 bits (1051), Expect = e-111, Method: Compositional matrix adjust. Identities = 251/636 (39%), Positives = 368/636 (57%), Gaps = 66/636 (10%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 V++ L+ YL YA+S I RA+PD+RDG KPVHRR++ AM+E+ D+ +KKSAR+V Sbjct: 11 VNIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELKNDWNKPYKKSARVV 70 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG++DGDSAAA RYTE RM +V Sbjct: 71 GDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRMARV 130 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 + +L ++++ VD+ D Y+ + P V P+K PNLL NG SGIAVGMAT+IP HN+ E+ Sbjct: 131 SHELLADLEKETVDYVDNYDGTEKIPAVLPTKIPNLLVNGASGIAVGMATNIPPHNLNEV 190 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 LALI+NP+I+I++L++YI GPDFPT II ++ I ++Y+ GRG +RA+ VE Sbjct: 191 INGCLALINNPDITIDELIDYIPGPDFPTAAII-SGKKGIEQAYKTGRGKVYIRAKAEVE 249 Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKNR 318 RG I+V E+PYQV K+RLIEKIAEL+ K+I + +RDES +D +RIV+ K R Sbjct: 250 TDERGKETIIVHELPYQVNKARLIEKIAELVKDKKIEGISALRDESDKDGMRIVVEIK-R 308 Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378 ++++ +++ + M+T F +NM L G+ P+++ L +L ++ HRREV+ RR+ F Sbjct: 309 GEVGEVVLNNLYAQTSMQTVFGMNMVALDNGQ-PKLLNLKEMLHAFVVHRREVVTRRTVF 367 Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR--------------- 420 ++ R L+GL IA NID II +IR P K +++R Sbjct: 368 DLRKARDRAHTLEGLAIALANIDPIIELIRRSPTPAEAKEALLARPWDLGHVQSMLERTG 427 Query: 421 --------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEK 460 + L+ Q AIL LRL L LE +I +E LL + Sbjct: 428 ESNVARPEWLDAELGIRDGQYHLSPQQAQAILELRLHRLTGLEHEKILAEYQELLDLIAE 487 Query: 461 IDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI 520 + +L+S ++ I E+ KE + RRT + A +L+ +I +E + Sbjct: 488 LLHILSSPERLLEVIRDELALAKEQYGDE-----RRTVIT--AAAHDISLED-LINEEDV 539 Query: 521 TVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-- 570 V +S+ G+++ + + SA K+ D ++ L A+T D IL ST G Sbjct: 540 VVTLSHEGYVKYQPLSDYEAQRRGGKGKSATKMKDEDFIERLLVANTHDTILCFSTAGRL 599 Query: 571 ---KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIV 603 K Y LP L S G+ I L+ L N+ I Sbjct: 600 YWLKVYQLP---LASRAARGKPIINLLPLEANERIT 632 >gi|37526938|ref|NP_930282.1| DNA gyrase subunit A [Photorhabdus luminescens subsp. laumondii TTO1] gi|36786371|emb|CAE15424.1| DNA gyrase subunit A [Photorhabdus luminescens subsp. laumondii TTO1] Length = 878 Score = 409 bits (1051), Expect = e-111, Method: Compositional matrix adjust. Identities = 252/637 (39%), Positives = 370/637 (58%), Gaps = 60/637 (9%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + V++ L+ YL YA+S I RA+PD+RDG KPVHRR+++AMS +G D+ +KKSA Sbjct: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSVLGNDWNKPYKKSA 67 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG++DGDSAAA RYTE RM Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEVRM 127 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 +VA +L ++++ VDF Y+ + P V P+K PNLL NG+SGIAVGMAT+IP HN+ Sbjct: 128 AKVAHELLADLEKETVDFVPNYDGTEQIPEVMPTKVPNLLINGSSGIAVGMATNIPPHNL 187 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ + LA I++ ISIE L++YI GPDFPT II R I E+YR GRG +RAR Sbjct: 188 SEVIDGCLAYIEDENISIEGLMQYIPGPDFPTAAII-NGRRGIQEAYRTGRGKIYIRARA 246 Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314 +E + G I+V EIPYQV K+RLIEKIAEL+ KRI + +RDES +D +RIV+ Sbjct: 247 EIEVDEKNGRETILVHEIPYQVNKARLIEKIAELVKEKRIEGVSALRDESDKDGMRIVIE 306 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K ++ ++++ +++ L+ ++ F +NM L G+ P+++ L I+ ++ HRREV+ R Sbjct: 307 VKRDAVG-EVVLNNLYSLTQLQVSFGINMVALHQGQ-PKLLNLKDIISAFVCHRREVVTR 364 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-------------------------- 408 R+ F ++ R IL+ L +A NID II +IR Sbjct: 365 RTIFELRKARERAHILEALAVALANIDPIIELIRFASTPAEAKAALVAQPWELGSVATML 424 Query: 409 ---NEDKPKP--------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457 +D +P V ++ LTE Q AIL+LRL+ L LE ++ E LL Sbjct: 425 ERAGDDAARPEWLESQYGVHEGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYRELLTL 484 Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517 ++ +L + ++ I E+ +K +S + RRT E + AD + +I + Sbjct: 485 IGELLFILENPERLMEVIREELLAIKAQYSDA-----RRTEITE-NTADINI--EDLINQ 536 Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569 E + V +S++G+++ + + SA KE D + L A+T D IL S+ Sbjct: 537 EDVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDKLLVANTHDTILCFSSR 596 Query: 570 GKAYTLPAGNLL-SGRG-HGEAIQLLIDLNHNQDIVT 604 G+ Y + L + RG G I L+ L N+ I Sbjct: 597 GRLYWMKVYQLPEASRGARGRPIVNLLPLEQNERITA 633 >gi|121613117|ref|YP_001000706.1| DNA gyrase subunit A [Campylobacter jejuni subsp. jejuni 81-176] gi|167005627|ref|ZP_02271385.1| DNA gyrase subunit A [Campylobacter jejuni subsp. jejuni 81-176] gi|87249145|gb|EAQ72106.1| DNA gyrase, A subunit [Campylobacter jejuni subsp. jejuni 81-176] Length = 862 Score = 409 bits (1051), Expect = e-111, Method: Compositional matrix adjust. Identities = 237/607 (39%), Positives = 377/607 (62%), Gaps = 32/607 (5%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 + +++ V + +++ YL Y++S I RA+PD RDG KPVHRRI++AM F Sbjct: 8 DSDIELVDIENSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFV 67 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSARIVG VIG+ HPHGD +VYD+LVR+AQ F RYP I+GQGNFG+IDGDSAAA RYTE Sbjct: 68 KSARIVGAVIGRYHPHGDTAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTE 127 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 A+M++++ +L+ +D+D VDF Y+ +SEP V PS+ PNLL NG+SGIAVGMAT+IP Sbjct: 128 AKMSKLSHELLKDIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPP 187 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 H++ E+ + L L+D+ + S+E+++++I GPDFPTGGII ++ I+E+YR GRG +VR Sbjct: 188 HSLNELIDGLLYLLDSKDASLEEIMQFIKGPDFPTGGIIY-GKKGIIEAYRTGRGRVKVR 246 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIV 312 A+ +E+ IV+ E+PYQ K+RLIE+IAEL+ K+I + ++RDES E +R+V Sbjct: 247 AKTHIEK-KTNKDVIVIDELPYQTNKARLIEQIAELVKEKQIEGISEVRDESNKEGIRVV 305 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 + K ++ ++++ ++F + ME+ F + M + + P++ L +L +L HR+ V+ Sbjct: 306 IELKREAM-SEIVLNNLFKSTTMESTFGVIMLAIH-NKEPKIFSLLELLNLFLTHRKTVI 363 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLTENQVD 429 RR+ F +Q R IL+GL IA NIDE+IA+I+N + + +V++F L+E Q + Sbjct: 364 IRRTIFELQKARARAHILEGLKIALDNIDEVIALIKNSSDNNTARDSLVAKFGLSELQAN 423 Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489 AIL+++L L LE +I++EL L+ E +++ +L S N I E++E++ F Sbjct: 424 AILDMKLGRLTGLEREKIENELAELMKEIARLEEILKSETLLENLIRDELKEIRSKF--- 480 Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS-------- 541 D+ R ++ + +I E + V I++RG+I+ + S + Sbjct: 481 -DVPR----ITQIEDDYDDIDIEDLIPNENMVVTITHRGYIKRVPSKQYEKQKRGGKGKL 535 Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDL 596 A+ + D ++ A+T D ++ ++ G K Y +P G S G+A+ LI+L Sbjct: 536 AVTTYDDDFIESFFTANTHDTLMFVTDRGQLYWLKVYKIPEG---SRTAKGKAVVNLINL 592 Query: 597 NHNQDIV 603 + I+ Sbjct: 593 QAEEKIM 599 >gi|86150936|ref|ZP_01069152.1| DNA gyrase, A subunit [Campylobacter jejuni subsp. jejuni 260.94] gi|85842106|gb|EAQ59352.1| DNA gyrase, A subunit [Campylobacter jejuni subsp. jejuni 260.94] Length = 862 Score = 409 bits (1051), Expect = e-111, Method: Compositional matrix adjust. Identities = 236/607 (38%), Positives = 377/607 (62%), Gaps = 32/607 (5%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 + +++ V + +++ YL Y++S I RA+PD RDG KPVHRRI++AM F Sbjct: 8 DSDIELVDIENSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFV 67 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSARIVG VIG+ HPHGD +VYD+LVR+AQ F RYP I+GQGNFG+IDGDSAAA RYTE Sbjct: 68 KSARIVGAVIGRYHPHGDTAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTE 127 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 A+M++++ +L+ +D+D VDF Y+ +SEP V PS+ PNLL NG+SGIAVGMAT+IP Sbjct: 128 AKMSKLSHELLKDIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPP 187 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 H++ E+ + L L+DN + S+E+++++I GPDFPTGGII ++ I+E+YR GRG +VR Sbjct: 188 HSLNELIDGLLYLLDNKDASLEEIMQFIKGPDFPTGGIIY-GKKGIIEAYRTGRGRVKVR 246 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIV 312 A+ +E+ I++ E+PYQ K+RLIE+IAEL+ ++I + ++RDES E +R+V Sbjct: 247 AKTHIEK-KTNKDVIIIDELPYQTNKARLIEQIAELVKERQIEGISEVRDESNKEGIRVV 305 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 + K ++ ++++ ++F + ME+ F + M + + P++ L +L +L HR+ V+ Sbjct: 306 IELKREAM-SEIVLNNLFKSTTMESTFGVIMLAIH-NKEPKIFSLLELLNLFLTHRKTVI 363 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLTENQVD 429 RR+ F +Q R IL+GL IA NIDE+IA+I+N + + +V++F L+E Q + Sbjct: 364 IRRTIFELQKARARAHILEGLKIALDNIDEVIALIKNSSDNNTARDSLVAKFGLSELQAN 423 Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489 AIL+++L L LE +I++EL L+ E +++ +L S N I E++E++ F Sbjct: 424 AILDMKLGRLTGLEREKIENELAELMKEIARLEEILKSETLLENLIRDELKEIRSKF--- 480 Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS-------- 541 D+ R ++ + +I E + V I++RG+I+ + S + Sbjct: 481 -DVPR----ITQIEDDYDDIDIEDLIPNENMVVTITHRGYIKRVPSKQYEKQKRGGKGKL 535 Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDL 596 A+ + D ++ A+T D ++ ++ G K Y +P G S G+A+ LI+L Sbjct: 536 AVTTYDDDFIESFFTANTHDTLMFVTDRGQLYWLKVYKIPEG---SRTAKGKAVVNLINL 592 Query: 597 NHNQDIV 603 + I+ Sbjct: 593 QAEEKIM 599 >gi|146282687|ref|YP_001172840.1| DNA gyrase subunit A [Pseudomonas stutzeri A1501] gi|145570892|gb|ABP79998.1| DNA gyrase subunit A [Pseudomonas stutzeri A1501] Length = 954 Score = 409 bits (1050), Expect = e-111, Method: Compositional matrix adjust. Identities = 243/620 (39%), Positives = 371/620 (59%), Gaps = 59/620 (9%) Query: 5 NISNSNTLVE--ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62 I N ++ E + + V++ L++ YL YA+S I RA+PD RDG KPVHRR+++AMS Sbjct: 13 TIRNQASMGELAKEILPVNIEDELKQSYLDYAMSVIIGRALPDARDGLKPVHRRVLYAMS 72 Query: 63 EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122 E+G D+ +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG++D Sbjct: 73 ELGNDWNKPYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVD 132 Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182 GDSAAA RYTE RM ++A +L +D++ VD+ Y+ + P V P+K PNLL NG+SG Sbjct: 133 GDSAAAMRYTEVRMAKLAHELLADLDKETVDWVPNYDGTEQIPAVMPTKIPNLLVNGSSG 192 Query: 183 IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242 IAVGMAT+IP HN+ E+ + LALIDN +I+I++L+++I GPDFPT GII R I+E+ Sbjct: 193 IAVGMATNIPPHNLGEVIDGCLALIDNADITIDELMQFIPGPDFPTAGII-NGRAGIIEA 251 Query: 243 YRLGRGGFRVRARWCVEEVGR--GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300 YR GRG +RAR +E++ + G IV+TE+PYQ+ K+RLIEKIAEL+ K+I + + Sbjct: 252 YRTGRGRIYIRARADIEDIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKIEGITE 311 Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360 +RDES +D V+ R P++++ +++ + +++ F +N+ L G+ P+ + L + Sbjct: 312 LRDESDKDGMRVVIELRRGEVPEVILNNLYAQTQLQSVFGINVVALVDGQ-PRTLNLKEL 370 Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVM 417 L+ ++ HRREV+ RR+ + ++ R IL+G +A NID +IA+I+ P K + Sbjct: 371 LEAFVRHRREVVTRRTVYELRKARERGHILEGQAVALSNIDPVIALIKASPTPAEAKDAL 430 Query: 418 VS----------------------------------RFSLTENQVDAILNLRLRSLRKLE 443 +S ++ L+ Q AIL+LRL L LE Sbjct: 431 ISTAWESSAVEAMVERAGADACRPENLDPQYGLRDGKYFLSPEQAQAILDLRLHRLTGLE 490 Query: 444 EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVS 503 ++ +E +L + ++ +L + + I E+ VK F + RRT E S Sbjct: 491 HEKLLAEYQEILTQIGELIRILTNPVRLMEVIREELEGVKRDFGDA-----RRTEILE-S 544 Query: 504 RADKATLQQAMIEKEPITVVISNRGWIRS--LKSHSVDL------SALHFKEGDSLKIAL 555 R D TL + E+E + V IS+ G+ +S L ++ +A KE D ++ L Sbjct: 545 RLD-LTLADLITEEERV-VTISHGGYAKSQPLAAYQAQRRGGRGKAATGVKEEDYVEHLL 602 Query: 556 HAHTTDRILLLSTDGKAYTL 575 A++ +LL S+ GK Y L Sbjct: 603 VANSHTTLLLFSSKGKVYWL 622 >gi|227537184|ref|ZP_03967233.1| DNA topoisomerase [Sphingobacterium spiritivorum ATCC 33300] gi|227242899|gb|EEI92914.1| DNA topoisomerase [Sphingobacterium spiritivorum ATCC 33300] Length = 848 Score = 409 bits (1050), Expect = e-111, Method: Compositional matrix adjust. Identities = 235/644 (36%), Positives = 380/644 (59%), Gaps = 39/644 (6%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 +++ ++ Y+ Y++S I RA+PD RDG KPVHRR+++ M ++G+ G +KKSARIV Sbjct: 20 INIEDQMKAAYIDYSMSVIVSRALPDARDGLKPVHRRVLYGMLDLGVTSGKPYKKSARIV 79 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+V+GK HPHGD SVYD++VRLAQ + RYPL+ GQGN+G+IDGD AA RYTEAR+ ++ Sbjct: 80 GDVLGKYHPHGDSSVYDAMVRLAQDWSMRYPLVDGQGNYGSIDGDPPAAMRYTEARLKKI 139 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 AE +L +++D VDF+ +++ EP V P++ PNLL NG SGIAVGMAT++ HN+ E+ Sbjct: 140 AEEMLSDINKDTVDFKLNFDDSLEEPTVLPTRIPNLLVNGASGIAVGMATNMAPHNLSEV 199 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 + +A IDN EI I +L++YI GPDFPTGGII + E+ GRG +RA+ +E Sbjct: 200 VDGTIAFIDNREIEISELMQYIKGPDFPTGGIIY-GYNGVKEACETGRGRVVMRAKAEIE 258 Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319 G CI+VTEIPYQV K+ +I++ AEL+ K+I + +IRDES + V++ R Sbjct: 259 TTKSGRECIIVTEIPYQVNKADMIKRTAELVNEKKIEGISEIRDESDREGFRVVYDIKRD 318 Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379 + ++++ +++ + ++T F +N L GR P +M L ++ E++ HR EV+ RR+ F Sbjct: 319 ANANVVLNNLYKYTALQTSFSVNNIALVKGR-PMMMNLKDMIHEFVEHRHEVVIRRTKFE 377 Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVDAILNLRL 436 + ++R IL+G LIA ++DE+I +IR + P+ ++ RF+L++ Q AIL++ L Sbjct: 378 LAEAEKRAHILEGYLIALDHLDEVIKLIRASETPEDARTGLMERFALSDLQARAILDMTL 437 Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496 R L LE +IK E + L+ E + +L+ + I E+ E+K+ + RR Sbjct: 438 RRLTGLERDKIKEEYNELMKTIEYLKEVLSDEGLRMKIIKDELLEIKDKYGDE-----RR 492 Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS--------ALHFKEG 548 + V A+ ++ I+ E I + IS+ +++ + +E Sbjct: 493 SII--VHSAEDMRMED-FIDDEEIVITISHNSYVKRTPLSEYKRQGRGGRGSIGTNTREE 549 Query: 549 DSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIV 603 D + + A + +L + G +A+ +P G+ S G A+Q +I++ ++ I Sbjct: 550 DFTEHIITASAHNYMLFFTEAGRCFWLRAFEIPEGSRTS---RGRALQNIINIPKDEKI- 605 Query: 604 TAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE 647 A++ V++ K ++ E + II T+KG T K S E Sbjct: 606 KAYIK-------VINLKDQEYL-ENNFIIMCTKKG-TIKKTSLE 640 >gi|328950542|ref|YP_004367877.1| DNA gyrase, A subunit [Marinithermus hydrothermalis DSM 14884] gi|328450866|gb|AEB11767.1| DNA gyrase, A subunit [Marinithermus hydrothermalis DSM 14884] Length = 804 Score = 409 bits (1050), Expect = e-111, Method: Compositional matrix adjust. Identities = 269/757 (35%), Positives = 428/757 (56%), Gaps = 57/757 (7%) Query: 26 LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85 +++ ++ YA+S I +RA+PD+RDG KPV RRI++AM + GL KSA +VGEVI K Sbjct: 13 VKQSFINYAMSVIVDRALPDVRDGLKPVQRRILYAMLQEGLLPNRKHSKSAGVVGEVIKK 72 Query: 86 LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145 HPHGDQ+VYD++VRLAQ + RYPL+ GQGNFG+IDGD AAAYRYTEAR++Q+A +L+ Sbjct: 73 YHPHGDQAVYDAMVRLAQDWNLRYPLVDGQGNFGSIDGDPAAAYRYTEARLSQIALELLR 132 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 +D++ VDF+ ++ +EP V P+ FPNLL NG++GIAVGMATS+P HN+ E+ +A +A Sbjct: 133 DIDKETVDFKPNFDGTTTEPEVLPAGFPNLLVNGSAGIAVGMATSLPPHNLSEVIDALVA 192 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265 +ID PEI++++++ Y+ GPDFPTGG + + I E+Y GRG ++RA+ EE G Sbjct: 193 MIDRPEITLDEVMTYLPGPDFPTGGRL--HKGGIREAYATGRGSLKLRAKVRQEE-KNGR 249 Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFPKNRSLDPDL 324 +VVTEIPYQV K+ LI +IA L+ AK+I + +RDES + +RI + K R +PD+ Sbjct: 250 VVLVVTEIPYQVNKAHLISQIASLVKAKKIEDIAALRDESDRQGLRIAIELK-RGANPDV 308 Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384 ++ +F ++++T F +NM + G P+V+PL +++ +L HRR+V+ RR+ F ++ + Sbjct: 309 VLNQLFKHTNLQTSFTVNMLAIVDGE-PRVLPLLELMRHYLEHRRQVVTRRTRFELKKAE 367 Query: 385 RRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAILNLRLRSLRK 441 R +L+GLLIA N+DE+IA+IR + K +++RF LTE Q AIL++RL+ L Sbjct: 368 ERAHVLEGLLIALDNLDEVIALIRGSQDGAEAKAGLIARFGLTEVQAQAILDMRLQRLTG 427 Query: 442 LEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCE 501 LE +I++E L + ++L + W + E+ VKE + RRT E Sbjct: 428 LEREKIQAEHRELQETIAYLRAILEDEARLWGVVKEELLAVKERHGDT-----RRTVINE 482 Query: 502 VSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKI 553 + + +IE EP+ + ++ G++ R+ V + A K+ D Sbjct: 483 FAGGFNP---EDLIEDEPMVITMTAAGFLKRTPLEAYRAQGRGGVGVQASRSKDEDEATR 539 Query: 554 ALHAHTTDRILLLSTDGKAY-----TLPAGNLLSGRGHGEAIQLLIDLNHNQDIVT---- 604 A+ D +L + G+ Y LP S + G I+ ++ L ++++ T Sbjct: 540 LFVANMHDDLLFFTNKGRVYREKVFELPEA---SRQARGVHIRSILPLAEDEEVATLLSV 596 Query: 605 -------AFVYDSTCKLLVVSSKGNAFIVEESEIIA-NTRKGKTFLKVSSEEKMKLVVKV 656 FV+ + L+ + + S +IA N G T ++V ++ V+ Sbjct: 597 RGLTIPGHFVFATRRGLIKKTPIREYQNLTASGLIAINLVDGDTLIQVGVAQEDAEVILA 656 Query: 657 TGDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGG--ISDVICFKICEGLTWID 713 T N + + F++ ++ R +GVR KDG +S ++ K G + Sbjct: 657 T--------RNGQAIRFALTEVRATGRASQGVRGVRLKDGDEVVSLIVVPKGWTG-DLLA 707 Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750 R Y + RGG+G L + P+ G+ Sbjct: 708 VGTRGYGKRTPVEEYPTQGRGGLGVLTFRSTPKVGQL 744 >gi|302870740|ref|YP_003839376.1| DNA gyrase, A subunit [Caldicellulosiruptor obsidiansis OB47] gi|302573599|gb|ADL41390.1| DNA gyrase, A subunit [Caldicellulosiruptor obsidiansis OB47] Length = 809 Score = 409 bits (1050), Expect = e-111, Method: Compositional matrix adjust. Identities = 249/697 (35%), Positives = 409/697 (58%), Gaps = 34/697 (4%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 V ++ +++ Y+ YA+S I RA+PD+RDG KPVHRRI++AM+E+GL ++KSA +V Sbjct: 11 VEIQEEMKKSYIDYAMSVIVSRALPDVRDGLKPVHRRILYAMNEIGLTPDKPYRKSATVV 70 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G V+ K HPHGD +VY+SLVR+AQ F R+PL+ G GNFG++DGD AA RYTEARM+++ Sbjct: 71 GHVLAKYHPHGDAAVYESLVRMAQDFSMRHPLVDGHGNFGSVDGDPPAAMRYTEARMSKI 130 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A +L+ ++++ VDF ++E EP V PS+FPNLL NG+ GIAVGMAT+IP HN+ E+ Sbjct: 131 AVEMLRDIEKETVDFMPNFDESAKEPKVLPSRFPNLLVNGSQGIAVGMATNIPPHNLAEV 190 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 +A + ++DN +++ +++ I GPDFPTGG I+ ++ I ++Y G+G VRA+ +E Sbjct: 191 IDAIVYILDNENATLDDIMKIIKGPDFPTGGYII-GKKGIRDAYATGKGKIIVRAKTSIE 249 Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFPKNR 318 + +G I++TE+PY V K+RLIEKIAEL+ K+I + DIRDES E +RIV+ K + Sbjct: 250 QTSKGRQRIIITELPYMVNKARLIEKIAELVHEKKIDGISDIRDESDKEGLRIVIEIK-K 308 Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378 D +++++ ++ + ++ F + M L + P+V+ L +L ++ H++E++ RR+ + Sbjct: 309 DADANVVLKQLYKNTQLQDSFGIIMLAL-VDNQPKVLTLMDMLNLYIEHQKEIIVRRTRY 367 Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAILNLR 435 ++ + R IL+GL A +IDEII+IIR+ + K ++ RF T+ Q AIL++R Sbjct: 368 DLKKAEERAHILEGLKKALDHIDEIISIIRSSKTVSEAKDRLIQRFKFTDVQAQAILDMR 427 Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495 L+ L LE +I+ EL L+ E ++L S I EI E+KE + R Sbjct: 428 LQRLTGLERQKIEEELAELIKMIEYYKNVLASEAMVKEIIKKEILEIKEKYKDE-----R 482 Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSVDLSALHFKE 547 RT + D + ++ +T +++ G+I+ L K ++ + +E Sbjct: 483 RTKIIQDEHEDFEEEELIQEQETVVT--LTHFGYIKRLPLDTYKSQKRGGRGITGISTRE 540 Query: 548 GDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602 D ++ T IL + G +AY +P G S + G AI LI ++ ++ I Sbjct: 541 DDFVEDVFVTTTHHYILFFTDKGRVFRLRAYEVPEG---SRQAKGTAIVNLIQISKDEKI 597 Query: 603 V-TAFVYD-STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-D 659 T V D L++ + G V SE T+ GK + ++ ++ + V +G D Sbjct: 598 TATMAVKDFKEGYLMMCTKNGTIKKVLLSEFENTTKAGKKAITLADDDSLVDVKLTSGND 657 Query: 660 HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDG 695 V +V N ++F+ + + M R +GV+ + ++G Sbjct: 658 EVVLVSGNGYCVVFNENDVRVMGRLAQGVKGMTLEEG 694 >gi|24212706|ref|NP_710187.1| DNA gyrase subunit A [Leptospira interrogans serovar Lai str. 56601] gi|45655920|ref|YP_000006.1| DNA gyrase subunit A [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|24193337|gb|AAN47205.1|AE011192_6 DNA gyrase subunit A [Leptospira interrogans serovar Lai str. 56601] gi|24753768|gb|AAN64016.1|AF434658_13 DNA gyrase subunit A [Leptospira interrogans] gi|45599153|gb|AAS68643.1| DNA gyrase subunit A [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 834 Score = 409 bits (1050), Expect = e-111, Method: Compositional matrix adjust. Identities = 252/657 (38%), Positives = 386/657 (58%), Gaps = 42/657 (6%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 V + ++E YL YA+S I RA+PD+RDG KPVHRRI+HAM+E + K A+IV Sbjct: 35 VEIEDQMKEAYLGYAMSVIVGRALPDVRDGLKPVHRRILHAMNERAWRSDRPYVKCAKIV 94 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 GEVIG HPHGD SVY++LVR+ Q F R PLI GQGNFG+IDGD+ AAYRYTEAR+ +V Sbjct: 95 GEVIGNYHPHGDASVYEALVRMVQEFSLRVPLIDGQGNFGSIDGDNPAAYRYTEARLEKV 154 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 AE +L+ ++++ V F Y++ +P V P+ FPNLL NG+SGIAVGMAT+IP HN++E Sbjct: 155 AEELLRDIEKETVSFSPNYDDTKEQPDVLPANFPNLLVNGSSGIAVGMATNIPPHNLRET 214 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 +A +A+I NPEI+I ++L+ I GPDFPT I+ E ++ +Y G+G R+R++ +E Sbjct: 215 IDAVIAVIRNPEITIPEILKIIPGPDFPT-SGIIIGGEGLISAYSTGKGSIRIRSKVEIE 273 Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFPKNR 318 E G IVVTEIPYQV K L+EKI +L+ K+I + +I D S + +R+ + K + Sbjct: 274 EKKNGREVIVVTEIPYQVNKKVLLEKIGDLVNEKQIEGISEILDLSDRKGIRVEIHIK-K 332 Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378 + +++ ++ ++ ++ + + M + + P++ + IL + AHRREV+ RR+ F Sbjct: 333 DANAQVILNQLYKMTQLQVSYGITMLAI-LDNKPKIFNIKEILTAYAAHRREVIVRRTQF 391 Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVDAILNLR 435 + ++R IL+GL IA NI+++I +IR P K ++ RFSL+E Q DAIL +R Sbjct: 392 DLDKAEKRAHILEGLKIALENIEDVIKVIRASKNPPEAKQQLMIRFSLSEVQSDAILEMR 451 Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC-EIREVKEIFSKSTDLGR 494 L+ L LE +I EL+ + + +L + + N+I C E++EV + + G Sbjct: 452 LQRLTSLEVQKIIDELEEVRKLIIDLKDIL-AKPSRVNEIVCTELQEVGDKY------GN 504 Query: 495 RRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSL--------KSHSVDLSALHF 545 +R T + + ++ + +I E I + I+ +I+ L K + L Sbjct: 505 KRKTEISIETIESSSFNAEDLIADEEIVIQITYDQFIKRLPIDTFKRQKRGGKGIQGLSQ 564 Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIV 603 K D +KI A T D I+ S GK Y + A L S G++++ +I+L ++ I Sbjct: 565 KRDDVIKIMKAAMTHDNIMFFSNIGKVYVMKAYELPIASKEARGKSLKAIINLREDEYIS 624 Query: 604 TAFVY---DSTCKLLVVSSKGNAFI----------VEESEIIA-NTRKGKTFLKVSS 646 + F + D LL+V+ KG FI V++S IIA R+G +KV S Sbjct: 625 SVFTFRGEDMDKDLLLVTRKG--FIKRIQLKEFGNVKKSGIIAIGLREGDELIKVES 679 >gi|88800758|ref|ZP_01116316.1| DNA gyrase subunit A [Reinekea sp. MED297] gi|88776534|gb|EAR07751.1| DNA gyrase subunit A [Reinekea sp. MED297] Length = 881 Score = 409 bits (1050), Expect = e-111, Method: Compositional matrix adjust. Identities = 276/744 (37%), Positives = 411/744 (55%), Gaps = 93/744 (12%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 V++ L++ YL YA+S I RA+PD+RDG KPVHRR++ AM+ +G D+ A+KKSAR+V Sbjct: 11 VNIEEELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKKSARVV 70 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGD +VYD++VR+AQ F RY L+ GQGNFG+IDGD+AAA RYTE RM ++ Sbjct: 71 GDVIGKYHPHGDSAVYDTIVRMAQDFSMRYTLVDGQGNFGSIDGDAAAAMRYTEIRMEKL 130 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A +L ++++ VD+ D Y+ + P V P++ PNLL NG+SGIAVGMAT+IP HN+ E+ Sbjct: 131 AHSLLADLEKETVDYVDNYDGTERIPDVLPTRVPNLLVNGSSGIAVGMATNIPPHNLGEV 190 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV- 258 + LALI+NP++ ++ L+EYI GPDFPTG I R+ IVE+YR GRG +RA+ V Sbjct: 191 IDGTLALIENPDLDVDGLMEYIPGPDFPTGAYI-NGRKGIVEAYRTGRGRIYMRAKADVV 249 Query: 259 --EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFP 315 E+ GR S I+V EIPYQV K+RLIEKIAEL+ K+I + ++RDES E +RI + Sbjct: 250 VDEKTGRES--IIVHEIPYQVNKARLIEKIAELVKEKKIEGISELRDESDKEGLRIAIDL 307 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 K R D+L+ +++ + +ET F +N L G+ P+V+ L +L+ ++ HRREV+ RR Sbjct: 308 K-RGESGDVLLNNLYAQTQLETVFGINAVALVDGQ-PKVLNLKEMLEAFIRHRREVVTRR 365 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE------------------------- 410 + F ++ +R IL+GL +A NIDE+I +IR+ Sbjct: 366 TVFDLRKARQRGHILEGLAVALANIDEMIELIRSSATGAEAKERMLARSWALGDVSAMLE 425 Query: 411 ----DKPKP--------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458 D +P V R+ L+ Q IL++RL+ L LE ++ E ++ + Sbjct: 426 RAGADVCRPEDLEEQFGVRDERYYLSPEQAQQILDMRLQKLTGLEHDKLIGEYKQIIDDI 485 Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518 + +LNS ++ I E+ EVK+ F G R T SR D + + +I +E Sbjct: 486 GEFLRILNSYERLMEVIREELMEVKDEF------GDARKTEIMTSRLDLS--MEDLITEE 537 Query: 519 PITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570 + V IS+ G+ ++ K SA K+ D ++ L A + D IL ST G Sbjct: 538 DMVVTISHSGYAKTQPLTDYEAQKRGGKGRSASALKDDDFIEHLLVASSHDTILCFSTFG 597 Query: 571 KAYTL---------------PAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615 K Y L P NLL +L N + D F++ +T Sbjct: 598 KVYWLRVFEIPQASRAARGRPMVNLLPLEAEERVTAILPIRNFDPDY---FIFMATASGT 654 Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD---HVAVVGENRKLLI 672 V + +AF + + + +S +E LV D V ++ + K++ Sbjct: 655 VKKTSLDAF---------SRPRSSGLIALSLDEGDHLVGVACTDGEREVMLLSDAGKVVR 705 Query: 673 FSIDQIPEMSR-GKGVRLQSYKDG 695 F + + M R +GVR S +DG Sbjct: 706 FKEEHVRPMGRTARGVRGISLEDG 729 >gi|152971178|ref|YP_001336287.1| DNA gyrase subunit A [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|150956027|gb|ABR78057.1| DNA gyrase subunit A [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] Length = 877 Score = 409 bits (1050), Expect = e-111, Method: Compositional matrix adjust. Identities = 266/727 (36%), Positives = 403/727 (55%), Gaps = 67/727 (9%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + V++ L+ YL YA+S I RA+PD+RDG KPVHRR+++AM+ +G D+ A+KKSA Sbjct: 8 ITPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG+IDGDSAAA RYTE R+ Sbjct: 68 RVVGDVIGKYHPHGDYAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 ++A ++ ++++ VDF D Y+ + P V P+K PNLL NG SGIAVGMAT+IP HN+ Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTERIPDVMPTKIPNLLVNGASGIAVGMATNIPPHNL 187 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ LA +D+ +ISIE L+ +I GPDFPT II R I E+YR GRG +RAR Sbjct: 188 TEVINGCLAYVDDEDISIEGLMAHIPGPDFPTAAII-NGRRGIEEAYRTGRGKVYIRARA 246 Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314 VE + G I+V EIPYQV K+RLIEKIAEL+ KR+ + +RDES +D +RIV+ Sbjct: 247 EVEVDAKSGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K ++ ++++ +++ + ++ F +NM L G+ P++M L I+ ++ HRREV+ R Sbjct: 307 VKRDAVG-EVVLNNLYSQTQLQVSFGINMVALHHGQ-PKIMNLKDIIAAFVRHRREVVTR 364 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVS------------ 419 R+ F ++ R IL+ L +A NID II +IR P K +V+ Sbjct: 365 RTIFELRKARDRAHILEALAVALANIDPIIELIRRAPTPAEAKTALVAQAWDLGNVAAML 424 Query: 420 ----------------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457 ++ LTE Q AIL+LRL+ L LE ++ E LL + Sbjct: 425 ERAGDDAARPEWLEPEFGVRDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQ 484 Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517 ++ +L S + I E+ +++ F G R T + AD + +I + Sbjct: 485 IAELLHILGSADRLMEVIREELELIRDQF------GDERRTEITANSADINI--EDLINQ 536 Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569 E + V +S++G+++ + + SA KE D + L A+T D IL S+ Sbjct: 537 EDVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSR 596 Query: 570 GKAYTLPAGNLL-SGRG-HGEAIQLLIDLNHNQDIVTAFV----YDSTCKLLVVSSKGNA 623 G+ Y + L + RG G I L+ L ++ I TA + Y+ + + ++ G Sbjct: 597 GRLYWMKVYQLPEASRGARGRPIVNLLPLEADERI-TAILPVREYEEGVNVFMATASGTV 655 Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMS 682 +E G + ++ +++ V +G D V + K++ F D + M Sbjct: 656 KKTALTEFSRPRSAGIIAVNLNEGDELIGVDLTSGQDEVMLFSAAGKVVRFKEDAVRAMG 715 Query: 683 R-GKGVR 688 R GVR Sbjct: 716 RTATGVR 722 >gi|167032370|ref|YP_001667601.1| DNA gyrase subunit A [Pseudomonas putida GB-1] gi|166858858|gb|ABY97265.1| DNA gyrase, A subunit [Pseudomonas putida GB-1] Length = 921 Score = 409 bits (1050), Expect = e-111, Method: Compositional matrix adjust. Identities = 234/601 (38%), Positives = 362/601 (60%), Gaps = 57/601 (9%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 V++ L + YL YA+S I RA+PD RDG KPVHRR+++AMSE+G D+ +KKSAR+V Sbjct: 11 VNIEDELRQSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMSELGNDWNKPYKKSARVV 70 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG++DGD+AAA RYTE RMT++ Sbjct: 71 GDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRYTEVRMTKL 130 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A +L + ++ VD+ Y+ + P V P++ PNLL NG+SGIAVGMAT+IP HN+ E+ Sbjct: 131 AHELLADLHKETVDWVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHNLGEV 190 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 + LALIDNP+++I++L+++I GPDFPT GII R+ I+E+YR GRG +RAR +E Sbjct: 191 IDGCLALIDNPDVTIDELMQFIPGPDFPTAGII-NGRQGIIEAYRTGRGRIYMRARSEIE 249 Query: 260 EVGR--GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317 ++ + G IV+TE+PYQ+ K+RLIEKIAEL+ K+I + ++RDES +D ++ Sbjct: 250 DIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKIEGITELRDESDKDGMRIVIELR 309 Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377 R P++++ +++ + +++ F +N+ L GR P+++ L +L+ ++ HRREV+ RR+ Sbjct: 310 RGEVPEVVLNNLYQQTQLQSVFGINVVALVDGR-PRLLNLKDLLEAFVRHRREVVTRRTV 368 Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK----------------PVMVSR- 420 F ++ R IL+G +A NID +IA+I+ P VMV R Sbjct: 369 FELRKARERGHILEGQAVALSNIDPVIALIKASPTPSEAKEALVSTPWESSAVQVMVERA 428 Query: 421 --------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEK 460 + L+ Q AIL+LRL L LE ++ +E +L + + Sbjct: 429 GADSCRPEDLPEQYGLHDGKYFLSPEQAQAILDLRLHRLTGLEHEKLLAEYQEILEQIGE 488 Query: 461 IDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI 520 + +L+S ++ I E+ ++ + + RRT E+ A MI +E Sbjct: 489 LIRILSSAERLMEVIREELEAIRAEYGDA-----RRT---EILNASHDLNYGDMIPEEER 540 Query: 521 TVVISNRGWIRS--LKSHSVDL------SALHFKEGDSLKIALHAHTTDRILLLSTDGKA 572 V IS+ G+ ++ L ++ SA K+ D ++ L A++ +LL S+ GK Sbjct: 541 VVTISHGGYAKTQPLSAYQAQRRGGKGKSATGVKDEDYIEHLLVANSHATLLLFSSKGKV 600 Query: 573 Y 573 Y Sbjct: 601 Y 601 >gi|327480943|gb|AEA84253.1| DNA gyrase subunit A [Pseudomonas stutzeri DSM 4166] Length = 935 Score = 409 bits (1050), Expect = e-111, Method: Compositional matrix adjust. Identities = 240/603 (39%), Positives = 364/603 (60%), Gaps = 57/603 (9%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 V++ L++ YL YA+S I RA+PD RDG KPVHRR+++AMSE+G D+ +KKSAR+V Sbjct: 11 VNIEDELKQSYLDYAMSVIIGRALPDARDGLKPVHRRVLYAMSELGNDWNKPYKKSARVV 70 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG++DGDSAAA RYTE RM ++ Sbjct: 71 GDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEVRMAKL 130 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A +L +D++ VD+ Y+ + P V P+K PNLL NG+SGIAVGMAT+IP HN+ E+ Sbjct: 131 AHELLADLDKETVDWVPNYDGTEQIPAVMPTKIPNLLVNGSSGIAVGMATNIPPHNLGEV 190 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 + LALIDN +I+I++L+++I GPDFPT GII R I+E+YR GRG +RAR +E Sbjct: 191 IDGCLALIDNADITIDELMQFIPGPDFPTAGII-NGRAGIIEAYRTGRGRIYIRARADIE 249 Query: 260 EVGR--GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317 ++ + G IV+TE+PYQ+ K+RLIEKIAEL+ K+I + ++RDES +D V+ Sbjct: 250 DIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKIEGITELRDESDKDGMRVVIELR 309 Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377 R P++++ +++ + +++ F +N+ L G+ P+ + L +L+ ++ HRREV+ RR+ Sbjct: 310 RGEVPEVILNNLYAQTQLQSVFGINVVALVDGQ-PRTLNLKELLEAFVRHRREVVTRRTV 368 Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVS--------------- 419 + ++ R IL+G +A NID +IA+I+ P K ++S Sbjct: 369 YELRKARERGHILEGQAVALSNIDPVIALIKASPTPAEAKDALISTAWESSAVEAMVERA 428 Query: 420 -------------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEK 460 ++ L+ Q AIL+LRL L LE ++ +E +L + + Sbjct: 429 GADACRPENLDPQYGLRDGKYFLSPEQAQAILDLRLHRLTGLEHEKLLAEYQEILTQIGE 488 Query: 461 IDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI 520 + +L + + I E+ VK F + RRT E SR D TL + E+E + Sbjct: 489 LIRILTNPVRLMEVIREELEGVKRDFGDA-----RRTEILE-SRLD-LTLADLITEEERV 541 Query: 521 TVVISNRGWIRS--LKSHSVDL------SALHFKEGDSLKIALHAHTTDRILLLSTDGKA 572 V IS+ G+ +S L ++ +A KE D ++ L A++ +LL S+ GK Sbjct: 542 -VTISHGGYAKSQPLAAYQAQRRGGRGKAATGVKEEDYVEHLLVANSHTTLLLFSSKGKV 600 Query: 573 YTL 575 Y L Sbjct: 601 YWL 603 >gi|71893880|ref|YP_279326.1| DNA gyrase subunit A [Mycoplasma hyopneumoniae J] Length = 868 Score = 409 bits (1050), Expect = e-111, Method: Compositional matrix adjust. Identities = 234/652 (35%), Positives = 379/652 (58%), Gaps = 34/652 (5%) Query: 13 VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72 + +N+ + + ++ +L Y++S I RA+PD+RDG KPVHRRI++ M+E+G+ G ++ Sbjct: 57 ITDNISPIKIEDEMKASFLDYSMSVIVSRALPDVRDGLKPVHRRILYTMAELGITSGTSY 116 Query: 73 KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132 KKSARIVG+V+GK HPHGD SVY+S+VR+AQPF RYPL+ G GNFG+IDGD AAA RYT Sbjct: 117 KKSARIVGDVLGKYHPHGDASVYESMVRMAQPFSLRYPLVDGHGNFGSIDGDEAAAMRYT 176 Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192 EAR+++++ +++G+ ++ VDFR Y+ + EP V P+KFPNLL +G SGIAVGM T IP Sbjct: 177 EARLSKISNKMIEGLKKNTVDFRPNYDASEVEPEVLPAKFPNLLVSGVSGIAVGMMTKIP 236 Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252 HN+ EI + + NP+I I +L+ + GPDFPTG I ++ I ++Y G+G F + Sbjct: 237 PHNLGEIIHSFIIFAKNPKIEINELISSLPGPDFPTGATIY-GKKGINQAYLTGKGSFII 295 Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312 RA+ +E + G I+ EIPY+V+K +IEK+A L+ K+I ++D+RDES+ V Sbjct: 296 RAKAKIENLNSGRSRIIFYEIPYEVKKPAIIEKVAFLVRNKKILGIKDVRDESSRHGIRV 355 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 +F + P++++ ++ +D++ + +NM L G VP++M L I +L H++E+ Sbjct: 356 VFEIKKGFSPEIILNKLYHSTDLQINYSINMLALVNG-VPKLMNLAQIFNYYLEHQKEIN 414 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVD 429 R +F ++ ++ +L+G+ +A NIDE+I II++ + + ++L Q Sbjct: 415 LRSLNFDLEKATEKLNVLEGIKVAVENIDEVIKIIKSSKSDQAAQEKLAHTYNLNSGQTK 474 Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489 AI+ +RL L L ++ +E++ L E +I S+++S K+ + I I + K + ++ Sbjct: 475 AIIEMRLGRLTSLAIEKLNNEIEELKVEISEIKSIIDSPKKLIDLI---IEQHKNVVAQF 531 Query: 490 TDLGRRRTTFCEVSRADKATL---QQAMIEKEPITVV---------ISNRGWIRSLKSHS 537 D RR E+ D+ L +Q +I V + NRG I +L S+ Sbjct: 532 GD-PRRSEIIPEIDCLDEEDLIADEQVIISLTQNNYVKKMVLDEYRLQNRGGIGTLASN- 589 Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL--LID 595 H+K+ D LK +T +L++S+ K + L A + G G+ I + LI Sbjct: 590 ------HYKD-DELKSLCITNTLSDLLIISSSAKIFKLRAHQIPDGSKQGKGIPILNLIK 642 Query: 596 LNHNQDIVTAFVYDSTCK---LLVVSSKGNAFIVEESEIIANTRKGKTFLKV 644 L N+ I ++ L+ VS+ GN S T+ GK LK+ Sbjct: 643 LEKNESISNLIPWNQEYDNHWLITVSAFGNIKKTALSAFRNITKNGKIALKL 694 >gi|313887643|ref|ZP_07821325.1| DNA gyrase, A subunit [Peptoniphilus harei ACS-146-V-Sch2b] gi|312846252|gb|EFR33631.1| DNA gyrase, A subunit [Peptoniphilus harei ACS-146-V-Sch2b] Length = 809 Score = 409 bits (1050), Expect = e-111, Method: Compositional matrix adjust. Identities = 239/631 (37%), Positives = 365/631 (57%), Gaps = 32/631 (5%) Query: 10 NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69 N ++E + V + + YL Y++S I RA+PD+RDG KPVHRRI++ M + L Sbjct: 4 NNIIESGILDVDINKKMRSSYLDYSMSVIVARALPDVRDGLKPVHRRILYGMQGLNLASN 63 Query: 70 AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129 ++KSAR+VG+V+GK HPHGD S+Y++ VRLAQ F RY L+ GQGNFGNIDGD AAA Sbjct: 64 GPYRKSARLVGDVMGKYHPHGDSSIYEATVRLAQDFNTRYTLVDGQGNFGNIDGDGAAAM 123 Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189 RYTE RMT++AE +L+ ++++ VDF ++E + EP + P++FPNLL NG+SGIAVGMAT Sbjct: 124 RYTEVRMTKLAEEMLRDINKETVDFVPNFDENEKEPTILPARFPNLLVNGSSGIAVGMAT 183 Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249 ++ HN+ E + +A IDN EISI +L + I GPDFPTG I+ + E I E+Y GRG Sbjct: 184 NMAPHNMNESIDGIIAYIDNDEISISELNQIIKGPDFPTGAQIMGT-EGIKEAYETGRGK 242 Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309 VRA ++ IV+TE+PYQV KS LI KIAEL K I + +I D S Sbjct: 243 ITVRAVAEIKSFKNNREKIVITELPYQVNKSALIMKIAELAKNKDIDGISNITDASNRKG 302 Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369 ++ R + ++++ ++ + M+T F + L GR P+++ L I++ ++ H+ Sbjct: 303 INIIVELKRDANAEVVLNKLYKNTQMQTTFGIINLALVNGR-PEILNLKQIIRYYVDHQV 361 Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTEN 426 EV+ RR+ F + ++R I++GL IA NID II I+R ++ + K F LTE Sbjct: 362 EVVTRRTKFDLDKAEKRAHIVEGLFIALDNIDRIIKIVRGSKDDKEAKEKFYEEFKLTEE 421 Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486 Q AIL++R+R L LE ++++E + L A+ + +L + N I E+ E+KE + Sbjct: 422 QSQAILDMRIRRLTGLERDRLEAEYEKLQADIKWFKEILENNDVLMNLIKEELLEIKEKY 481 Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSV 538 G R T +R D + +I+KE + + ++ G+I+ + K Sbjct: 482 ------GDLRRTVISHARTDIEI--EDIIKKEDVVITLTQFGYIKRMSEGTYKPQKRGGR 533 Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLL 593 +S+ + ++ D +K T D IL ++ G KAY +P + S G AI L Sbjct: 534 GVSSGNMRDKDFVKELFVTSTHDMILFFTSLGNVFKLKAYEIPEDSRTS---RGTAIINL 590 Query: 594 IDLNHNQ---DIVTAFVYDSTCKLLVVSSKG 621 +DL+ ++ I+ YD L+V+ KG Sbjct: 591 LDLDEDERVTSIIPVKEYDPDLNFLMVTEKG 621 >gi|189423108|ref|YP_001950285.1| DNA gyrase subunit alpha [Geobacter lovleyi SZ] gi|189419367|gb|ACD93765.1| DNA gyrase, A subunit [Geobacter lovleyi SZ] Length = 848 Score = 409 bits (1050), Expect = e-111, Method: Compositional matrix adjust. Identities = 243/627 (38%), Positives = 364/627 (58%), Gaps = 58/627 (9%) Query: 19 AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78 AV++ ++ Y+ YA+S I RA+PD+RDG KPVHRR ++AM++MG D+ +KKSAR+ Sbjct: 10 AVNIEDEMKRSYMDYAMSVIVGRALPDVRDGLKPVHRRCLYAMNDMGNDYNKPYKKSARV 69 Query: 79 VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138 VG+VIGK HPHGD +VYD++VR+AQ F RY L+ GQGNFG++DGDS AA RYTE RM Q Sbjct: 70 VGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYLLVDGQGNFGSVDGDSPAAMRYTEIRMKQ 129 Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198 + +L ++++ V F Y+E EP V P+KFPNLL NG+SGIAVGMAT+IP HN+ E Sbjct: 130 LTHELLADLEKETVPFTPNYDESLYEPAVLPAKFPNLLVNGSSGIAVGMATNIPPHNLGE 189 Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258 I +A +ALI NP +S E+LLE + GPDFPTGG I R+ I++ Y GRG ++RA+ V Sbjct: 190 IIDAIIALIHNPALSYEELLELVPGPDFPTGGTIY-GRQGIIDGYATGRGVIQIRAKAHV 248 Query: 259 EEVGRGSW-CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317 E + IVVTEIPYQV K+RLI IAEL+ K+I + D+RDES D ++ Sbjct: 249 ENSKKHDRESIVVTEIPYQVNKARLITSIAELVKEKKIEGISDLRDESDRDGMRIVIDLK 308 Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377 + + ++L+ ++ + M+T F +NM + R P++M L ++ ++ HRRE++ +R+ Sbjct: 309 KDENAEVLLNQLYKHTQMQTSFGINMLAIVHNR-PKLMSLAEMMHYFIEHRREMVTKRTL 367 Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP----VMVSRFS----------- 422 F ++ + R IL+GL IA +D +I +IR P +M RF+ Sbjct: 368 FELKKAEARAHILEGLKIALDWLDAVIELIRESKTPPEAKLGLMEGRFADPDYLQRLNLP 427 Query: 423 ----------LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQW 472 L+E Q AIL +RL+ L LE +I +E +++L ++ +L S + Sbjct: 428 RPAGYEKAVQLSEIQAQAILEMRLQRLTGLERDKIIAEYEDILRLIARLKEILGSDAEIM 487 Query: 473 NQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS 532 I E+ E+KE F +RRT V + +L+ IE + V +S+ G+I Sbjct: 488 KIIVGELTEIKERFGD-----KRRTEI--VHQTADISLEDT-IEDAEMVVTVSHTGYI-- 537 Query: 533 LKSHSVDL-----------SALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLP 576 K +VDL + + +E D ++ A T D +L S G K Y +P Sbjct: 538 -KRSAVDLYRAQRRGGKGKTGMKTREEDFVEQLFIASTKDFLLFFSDMGRVYRIKVYEIP 596 Query: 577 AGNLLSGRGHGEAIQLLIDLNHNQDIV 603 G+ + G+A+ L+++ + I Sbjct: 597 EGSRTT---KGKAVVNLVNVQEGEKIT 620 >gi|238760197|ref|ZP_04621343.1| DNA gyrase subunit A [Yersinia aldovae ATCC 35236] gi|238701576|gb|EEP94147.1| DNA gyrase subunit A [Yersinia aldovae ATCC 35236] Length = 884 Score = 409 bits (1050), Expect = e-111, Method: Compositional matrix adjust. Identities = 250/635 (39%), Positives = 372/635 (58%), Gaps = 60/635 (9%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + V++ L+ YL YA+S I RA+PD+RDG KPVHRR++ AM+ +G D+ +KKSA Sbjct: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSA 67 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG++DGDSAAA RYTE RM Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRM 127 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 +++A +L +++D VDF Y+ + P V P++ PNLL NG+SGIAVGMAT+IP HN+ Sbjct: 128 SKIAHELLADLEKDTVDFVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ + LALI++ I+I+ L+E+I GPDFPT II R I E+YR GRG VRAR Sbjct: 188 SEVIDGCLALIEDENITIDGLMEFIPGPDFPTAAII-NGRRGIDEAYRTGRGKIYVRARA 246 Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314 VE + G I+V EIPYQV K+RLIEKIAEL+ KR+ + +RDES +D +RIV+ Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K ++ ++++ +++ L+ ++ F +NM LS G+ P+++ L IL ++ HRREV+ R Sbjct: 307 IKRDAVG-EVVLNNLYSLTQLQVTFGINMVALSQGQ-PKLLNLKEILVAFVRHRREVVTR 364 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-------------------------- 408 R+ F ++ R IL+ L IA NID II +IR Sbjct: 365 RTIFELRKARDRAHILEALAIALANIDPIIELIRRAATPAEAKAGLIASPWELGNVAAML 424 Query: 409 ---NEDKPKP--------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457 +D +P + ++ LTE Q AIL+LRL+ L LE ++ E LL Sbjct: 425 ERAGDDAARPEWLEAEFGIRDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLTL 484 Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517 ++ +L + ++ I E+ +KE ++ + RRT E++ + +I + Sbjct: 485 IAELIFILENPERLMEVIREELVAIKEQYNDA-----RRT---EITANTSDINIEDLINQ 536 Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569 E + V +S++G+++ + + SA KE D + L A+T D IL S+ Sbjct: 537 EDVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSR 596 Query: 570 GKAYTLPAGNLL-SGRG-HGEAIQLLIDLNHNQDI 602 G+ Y + L + RG G I L+ L N+ I Sbjct: 597 GRLYWMKVYQLPEASRGARGRPIVNLLPLEPNERI 631 >gi|54020243|ref|YP_116054.1| DNA gyrase subunit A [Mycoplasma hyopneumoniae 232] gi|53987416|gb|AAV27617.1| DNA gyrase subunit A [Mycoplasma hyopneumoniae 232] gi|144227680|gb|AAZ44615.2| DNA gyrase subunit A [Mycoplasma hyopneumoniae J] Length = 853 Score = 408 bits (1049), Expect = e-111, Method: Compositional matrix adjust. Identities = 234/652 (35%), Positives = 379/652 (58%), Gaps = 34/652 (5%) Query: 13 VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72 + +N+ + + ++ +L Y++S I RA+PD+RDG KPVHRRI++ M+E+G+ G ++ Sbjct: 42 ITDNISPIKIEDEMKASFLDYSMSVIVSRALPDVRDGLKPVHRRILYTMAELGITSGTSY 101 Query: 73 KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132 KKSARIVG+V+GK HPHGD SVY+S+VR+AQPF RYPL+ G GNFG+IDGD AAA RYT Sbjct: 102 KKSARIVGDVLGKYHPHGDASVYESMVRMAQPFSLRYPLVDGHGNFGSIDGDEAAAMRYT 161 Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192 EAR+++++ +++G+ ++ VDFR Y+ + EP V P+KFPNLL +G SGIAVGM T IP Sbjct: 162 EARLSKISNKMIEGLKKNTVDFRPNYDASEVEPEVLPAKFPNLLVSGVSGIAVGMMTKIP 221 Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252 HN+ EI + + NP+I I +L+ + GPDFPTG I ++ I ++Y G+G F + Sbjct: 222 PHNLGEIIHSFIIFAKNPKIEINELISSLPGPDFPTGATIY-GKKGINQAYLTGKGSFII 280 Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312 RA+ +E + G I+ EIPY+V+K +IEK+A L+ K+I ++D+RDES+ V Sbjct: 281 RAKAKIENLNSGRSRIIFYEIPYEVKKPAIIEKVAFLVRNKKILGIKDVRDESSRHGIRV 340 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 +F + P++++ ++ +D++ + +NM L G VP++M L I +L H++E+ Sbjct: 341 VFEIKKGFSPEIILNKLYHSTDLQINYSINMLALVNG-VPKLMNLAQIFNYYLEHQKEIN 399 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVD 429 R +F ++ ++ +L+G+ +A NIDE+I II++ + + ++L Q Sbjct: 400 LRSLNFDLEKATEKLNVLEGIKVAVENIDEVIKIIKSSKSDQAAQEKLAHTYNLNSGQTK 459 Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489 AI+ +RL L L ++ +E++ L E +I S+++S K+ + I I + K + ++ Sbjct: 460 AIIEMRLGRLTSLAIEKLNNEIEELKVEISEIKSIIDSPKKLIDLI---IEQHKNVVAQF 516 Query: 490 TDLGRRRTTFCEVSRADKATL---QQAMIEKEPITVV---------ISNRGWIRSLKSHS 537 D RR E+ D+ L +Q +I V + NRG I +L S+ Sbjct: 517 GD-PRRSEIIPEIDCLDEEDLIADEQVIISLTQNNYVKKMVLDEYRLQNRGGIGTLASN- 574 Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL--LID 595 H+K+ D LK +T +L++S+ K + L A + G G+ I + LI Sbjct: 575 ------HYKD-DELKSLCITNTLSDLLIISSSAKIFKLRAHQIPDGSKQGKGIPILNLIK 627 Query: 596 LNHNQDIVTAFVYDSTCK---LLVVSSKGNAFIVEESEIIANTRKGKTFLKV 644 L N+ I ++ L+ VS+ GN S T+ GK LK+ Sbjct: 628 LEKNESISNLIPWNQEYDNHWLITVSAFGNIKKTALSAFRNITKNGKIALKL 679 >gi|28543251|gb|AAO42743.1| DNA gyrase subunit A [Campylobacter jejuni] Length = 852 Score = 408 bits (1049), Expect = e-111, Method: Compositional matrix adjust. Identities = 237/607 (39%), Positives = 378/607 (62%), Gaps = 32/607 (5%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 + +++ V + +++ YL Y++S I RA+PD RDG KPVHRRI++AM F Sbjct: 8 DSDIELVDIENSIKGSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFV 67 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSARIVG VIG+ HPHGD +VYD+LVR+AQ F RYP I+GQGNFG+IDGDSAAA RYTE Sbjct: 68 KSARIVGAVIGRYHPHGDIAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTE 127 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 A+M++++ +L+ +D+D VDF Y+ +SEP V PS+ PNLL NG+SGIAVGMAT+IP Sbjct: 128 AKMSKLSHELLKDIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPP 187 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 H++ E+ + L L+D+ ++S+E+++++I GPDFPTGGII ++ I+E+YR GRG +VR Sbjct: 188 HSLNELIDGLLYLLDSKDVSLEEIMQFIKGPDFPTGGIIY-GKKGIIEAYRTGRGRVKVR 246 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIV 312 A+ +E+ IV+ E+PYQ K+RLIE+IAEL+ K+I + ++RDES E +R+V Sbjct: 247 AKTHIEK-KTNKDVIVIDELPYQTNKARLIEQIAELVKEKQIEGISEVRDESNKEGIRVV 305 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 + K ++ ++++ ++F + ME+ F + M + + P++ L +L +L HR+ V+ Sbjct: 306 IELKREAM-SEIVLNNLFKSTTMESTFGVIMLAIH-NKEPKIFSLLELLNLFLTHRKTVI 363 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLTENQVD 429 RR+ F +Q R IL+GL IA NIDE+IA+I+N + + +V++F L+E Q + Sbjct: 364 IRRTIFELQKARARAHILEGLKIALDNIDEVIALIKNSSDNNTARDSLVAKFGLSELQAN 423 Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489 AIL+++L L LE +I++EL L+ E +++ +L S N I E++E++ F Sbjct: 424 AILDMKLGRLTGLEREKIENELAELMKEIARLEEILKSETLLENLIRDELKEIRSKF--- 480 Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS-------- 541 D+ R ++ + +I E + V I++RG+I+ + S + Sbjct: 481 -DVPR----ITQIEDDYDDIDIEDLIPNENMVVTITHRGYIKRVPSKQYEKQKRGGKGKL 535 Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDL 596 A+ + D ++ A+T D ++ ++ G K Y +P G S G+A+ LI+L Sbjct: 536 AVTTYDDDFIESFFTANTHDTLMFVTDRGQLYWLKVYKIPEG---SRTAKGKAVVNLINL 592 Query: 597 NHNQDIV 603 + I+ Sbjct: 593 QAEEKIM 599 >gi|220930857|ref|YP_002507765.1| DNA gyrase, A subunit [Halothermothrix orenii H 168] gi|219992167|gb|ACL68770.1| DNA gyrase, A subunit [Halothermothrix orenii H 168] Length = 816 Score = 408 bits (1049), Expect = e-111, Method: Compositional matrix adjust. Identities = 227/561 (40%), Positives = 348/561 (62%), Gaps = 29/561 (5%) Query: 30 YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89 YL YA+S I RA+PD+RDG KPV RRI++A+ ++G+ KKSAR+VGEV+GK HPH Sbjct: 23 YLDYAMSVIVSRALPDVRDGLKPVQRRILYALHDLGITPNKPHKKSARVVGEVLGKYHPH 82 Query: 90 GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDE 149 GD +VYD++VR+AQ F RYPL+ G GNFG+IDGDSAAA RYTE RM ++ +L+ +D+ Sbjct: 83 GDTAVYDTMVRMAQEFSFRYPLVDGHGNFGSIDGDSAAAMRYTEVRMARLTTELLRDIDK 142 Query: 150 DAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDN 209 + VDF ++E EP V P++ PNLL NG SGIAVGM+T+IP HN+ E+ + +ALIDN Sbjct: 143 NTVDFAPNFDESLEEPEVLPARLPNLLMNGVSGIAVGMSTNIPPHNLGEVIDGVVALIDN 202 Query: 210 PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIV 269 P++ ++ L++ I GPDFPTGGII+ ++ I ++Y+ GRG +VR + +EE G I+ Sbjct: 203 PDLEVKDLMKIIKGPDFPTGGIIM-GKDKIYQAYKTGRGRLKVRGKARIEEDKNGKSKII 261 Query: 270 VTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFPKNRSLDPDLLMES 328 +TEIPYQV K+RL+EKIA L+ ++I + D+RDES +RIV+ K ++ P +++ Sbjct: 262 ITEIPYQVNKARLVEKIANLVRDEKITGISDLRDESDRRGLRIVIELKKGTV-PKVILNR 320 Query: 329 IFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVE 388 ++ + ++ + + M L G +P+V+ L +L +L H++EV+ RR+ +++ + R Sbjct: 321 LYKYTQLQVTYGVIMLALVDG-MPRVLTLKELLNHYLEHQKEVVTRRTKYQLDKAEARAH 379 Query: 389 ILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEY 445 IL+GL IA NID+I+ +IR + D + ++ F+LTE Q +AIL +RL+ L LE Sbjct: 380 ILEGLRIALANIDDIVQLIREAPDVDTARRGLIENFNLTEKQAEAILRMRLQRLTGLERD 439 Query: 446 QIKSELDNLLAEKEKID---SLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEV 502 +I++E L KEKI S+L + I E+ E+KE F RRT E+ Sbjct: 440 KIEAEYKEL---KEKIAYYRSILADEGKLLGIIKDELLELKEKFQDE-----RRT---EI 488 Query: 503 SRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIA 554 S + +I +E + + +++ G+I RS + + ++ KE D ++ Sbjct: 489 SIQAVDLDVEDLIPEEQVVITLTHHGYIKRMPIDIYRSQRRGGKGIIGINTKEEDFVEHV 548 Query: 555 LHAHTTDRILLLSTDGKAYTL 575 T L + GK Y L Sbjct: 549 FTTSTHHYFLFFTNKGKVYRL 569 >gi|258543484|ref|YP_003188917.1| DNA gyrase subunit A [Acetobacter pasteurianus IFO 3283-01] gi|256634562|dbj|BAI00538.1| DNA gyrase subunit A [Acetobacter pasteurianus IFO 3283-01] gi|256637620|dbj|BAI03589.1| DNA gyrase subunit A [Acetobacter pasteurianus IFO 3283-03] gi|256640672|dbj|BAI06634.1| DNA gyrase subunit A [Acetobacter pasteurianus IFO 3283-07] gi|256643729|dbj|BAI09684.1| DNA gyrase subunit A [Acetobacter pasteurianus IFO 3283-22] gi|256646784|dbj|BAI12732.1| DNA gyrase subunit A [Acetobacter pasteurianus IFO 3283-26] gi|256649837|dbj|BAI15778.1| DNA gyrase subunit A [Acetobacter pasteurianus IFO 3283-32] gi|256652825|dbj|BAI18759.1| DNA gyrase subunit A [Acetobacter pasteurianus IFO 3283-01-42C] gi|256655881|dbj|BAI21808.1| DNA gyrase subunit A [Acetobacter pasteurianus IFO 3283-12] Length = 921 Score = 408 bits (1049), Expect = e-111, Method: Compositional matrix adjust. Identities = 245/633 (38%), Positives = 355/633 (56%), Gaps = 63/633 (9%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 V++ + YLAYA+S I RA+PD+RDG KPVHRRI++AM E G + ++KSAR V Sbjct: 19 VTIEEEMRSSYLAYAMSVIVSRALPDVRDGLKPVHRRILYAMHESGFTYDKPYRKSARAV 78 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 GEV+GK HPHGD S+YD++VR+AQ + R LI GQGNFG++DGDS AA RYTEAR+ + Sbjct: 79 GEVMGKYHPHGDSSIYDAMVRMAQSWSMRVKLIDGQGNFGSVDGDSPAAMRYTEARLAKA 138 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 + +L +D D VDF+ Y+E + EP V P+ FPNLL NG +GIAVGMAT+IP+HN E+ Sbjct: 139 STFLLNDIDRDTVDFQPNYDESEEEPTVLPATFPNLLINGATGIAVGMATNIPTHNPSEV 198 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 +A LALI NP++S++ L+EY+ GPDFPTGGII+ R I ++ GRG +RA+ +E Sbjct: 199 IDATLALIANPDLSLDDLMEYVPGPDFPTGGIIL-GRSGIRSAFATGRGAVIIRAKADIE 257 Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319 E+ + I+VTEIPYQV K+ L E+IA+L+ K+I + DIRDES V+ R Sbjct: 258 EIRKDRKAIIVTEIPYQVNKATLQERIADLVRNKQIEGIADIRDESDRSGMRVVIEIKRD 317 Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379 P++++ ++ + ++T F +NM L G+ P++M L +L+ ++A R EV+ RRS F Sbjct: 318 ATPEVVLNQLYRFTQLQTSFGVNMLALDGGK-PRLMGLKDVLEAFIAFREEVILRRSRFE 376 Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAIIRN----------------------------ED 411 + R IL GL+IA NID +IA+IR D Sbjct: 377 LNKARDRGHILVGLVIAVANIDAVIALIRGAPDAAAAREALMAAQWNAADVEPLLALIHD 436 Query: 412 KPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQ 471 V+ + LTE Q IL LRL+ L LE +I+ EL + ++I+ LL Sbjct: 437 DGNVVVDGKVRLTEAQARGILELRLQRLTGLERDKIQQELSEV---AQRINELLEI---- 489 Query: 472 WNQIACEIREVKEIFSKSTDLGRRRTTFCEVSR-ADKATLQ--QAMIEKEPITVVISNRG 528 I +R + E+ + R ++ AD A Q +++IE + V I+ G Sbjct: 490 ---IGSHVRRM-EVLRDELSVARAEIATPRMTEIADYAGDQDDESLIEPGQMVVTITREG 545 Query: 529 WI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY-----TL 575 +I R+ + + D + + +AHT ++ S+ GK Y L Sbjct: 546 FIKRTPLDVFRAQNRGGRGRTGASTRGDDIVVRSFNAHTHQWVMFFSSGGKVYRQKVWRL 605 Query: 576 P-AGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV 607 P AG GR + LL DL D +TA + Sbjct: 606 PEAGPAAKGRA---LVNLLPDL--GSDSITAVL 633 >gi|332184599|gb|AEE26853.1| DNA gyrase subunit A [Francisella cf. novicida 3523] Length = 862 Score = 408 bits (1049), Expect = e-111, Method: Compositional matrix adjust. Identities = 255/736 (34%), Positives = 414/736 (56%), Gaps = 87/736 (11%) Query: 11 TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70 +++ + ++++ L++ YL YA+S I RA+PD+RDG KPVHRR++ AM+E+ + Sbjct: 2 SIITKESSSINIEKELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELSNYYNR 61 Query: 71 AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130 +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG++DGDS AA R Sbjct: 62 PYKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYTLVDGQGNFGSVDGDSPAAMR 121 Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190 YTE RM ++ +L +D++ VDF Y+ + P V P++ PNLL NG+SGIAVGMAT+ Sbjct: 122 YTEIRMQKLTHELLIDIDKETVDFSPNYDNTELVPDVLPTRVPNLLVNGSSGIAVGMATN 181 Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250 IP HN+ E+ +ALIDN E++IE L+ YI PDFPTG I + I+E+Y+ GRG Sbjct: 182 IPPHNMTEVINGTIALIDNSELTIEDLIHYIPAPDFPTGSYI-NGTDGILEAYKTGRGRV 240 Query: 251 RVRARWCV-EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED- 308 +RA+ + E+ G IVVTEIPYQV K++L+EKIAEL+ K++ + ++RDES +D Sbjct: 241 IMRAKADIHEDEASGKAQIVVTEIPYQVNKAKLVEKIAELVKDKKVTGISELRDESDKDG 300 Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368 +R+V+ K R P++++ +++ + ++ F +NM LS R P+++ L IL++++ HR Sbjct: 301 IRVVIDLK-RDESPEVVLNTLYAQTQLQCSFGINMVALSDNR-PKLLNLKEILEQFIKHR 358 Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----- 420 +EV+ RR+ F ++ R IL+GLL++ NIDE+I +I+ P K M++R Sbjct: 359 KEVVTRRTIFELRKSKERAHILEGLLLSLANIDEMIELIKASPSPADAKESMLARSWNGS 418 Query: 421 ------------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSE 450 ++LTE Q +AIL LRL L LE+ +I +E Sbjct: 419 MVKSMLEGVDVKMYRKETLASHYGIQSDSSYNLTEEQAEAILALRLHRLTGLEQDKITNE 478 Query: 451 LDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATL 510 L+ + + +L+ + + E+ E+++ + R++ E SR D Sbjct: 479 FKELIERIKYLIGILSDVNELIRVVKEELVEIRDNYGD-----ERKSEIIE-SRLD--LT 530 Query: 511 QQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDR 562 ++ +I +E + V +S G++++ K V SA KE DS+ + A T D Sbjct: 531 REDLIAEENMVVTLSMDGYVKTQPLSMYNAQKRGGVGKSATKTKEEDSIFKLMLASTHDT 590 Query: 563 ILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV----YDSTCK 613 +L S+ G K Y P + +S G I ++ L ++ I TA + ++ Sbjct: 591 MLCFSSLGRVYWSKVYDFPVASRIS---KGRPINNILPLEKDERI-TAMMPISQFNEGWY 646 Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIF 673 + + + G V+ SE GK + ++ +++ +VA+ N+++++F Sbjct: 647 VFMATRLGRVKKVDLSEFARPRSTGKIAIGLNDGDELS--------YVALTDGNKQIMMF 698 Query: 674 SIDQIPEMSRGKGVRL 689 S GK +R Sbjct: 699 S-------DAGKAIRF 707 >gi|312601479|gb|ADQ90734.1| DNA gyrase subunit A [Mycoplasma hyopneumoniae 168] Length = 853 Score = 408 bits (1049), Expect = e-111, Method: Compositional matrix adjust. Identities = 234/652 (35%), Positives = 379/652 (58%), Gaps = 34/652 (5%) Query: 13 VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72 + +N+ + + ++ +L Y++S I RA+PD+RDG KPVHRRI++ M+E+G+ G ++ Sbjct: 42 ITDNISPIKIEDEMKASFLDYSMSVIVSRALPDVRDGLKPVHRRILYTMAELGITSGTSY 101 Query: 73 KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132 KKSARIVG+V+GK HPHGD SVY+S+VR+AQPF RYPL+ G GNFG+IDGD AAA RYT Sbjct: 102 KKSARIVGDVLGKYHPHGDASVYESMVRMAQPFSLRYPLVDGHGNFGSIDGDEAAAMRYT 161 Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192 EAR+++++ +++G+ ++ VDFR Y+ + EP V P+KFPNLL +G SGIAVGM T IP Sbjct: 162 EARLSKISNKMIEGLKKNTVDFRPNYDASEVEPEVLPAKFPNLLVSGVSGIAVGMMTKIP 221 Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252 HN+ EI + + NP+I I +L+ + GPDFPTG I ++ I ++Y G+G F + Sbjct: 222 PHNLGEIIHSFIIFAKNPKIEINELISSLPGPDFPTGATIY-GKKGINQAYLTGKGSFII 280 Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312 RA+ +E + G I+ EIPY+V+K +IEK+A L+ K+I ++D+RDES+ V Sbjct: 281 RAKAKIENLNSGRSRIIFYEIPYEVKKPAIIEKVAFLVRNKKILGIKDVRDESSRHGIRV 340 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 +F + P++++ ++ +D++ + +NM L G VP++M L I +L H++E+ Sbjct: 341 VFEIKKGFSPEIILNKLYHSTDLQINYSINMLALVNG-VPKLMNLAQIFNYYLEHQKEIN 399 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVD 429 R +F ++ ++ +L+G+ +A NIDE+I II++ + + ++L Q Sbjct: 400 LRSLNFDLEKATEKLNVLEGIKVAVENIDEVIKIIKSSKSDQAAQEKLAHTYNLNSGQTK 459 Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489 AI+ +RL L L ++ +E++ L E +I S+++S K+ + I I + K + ++ Sbjct: 460 AIIEMRLGRLTSLAIEKLNNEIEELKVEISEIKSIIDSPKKLIDLI---IEQHKNVVAQF 516 Query: 490 TDLGRRRTTFCEVSRADKATL---QQAMIEKEPITVV---------ISNRGWIRSLKSHS 537 D RR E+ D+ L +Q +I V + NRG I +L S+ Sbjct: 517 GD-PRRSEIIPEIDCLDEEDLIADEQVIISLTQNNYVKKMVLDEYRLQNRGGIGTLASN- 574 Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL--LID 595 H+K+ D LK +T +L++S+ K + L A + G G+ I + LI Sbjct: 575 ------HYKD-DELKSLCITNTLSDLLIISSSAKIFKLRAHQIPDGSKQGKGIPILNLIK 627 Query: 596 LNHNQDIVTAFVYDSTCK---LLVVSSKGNAFIVEESEIIANTRKGKTFLKV 644 L N+ I ++ L+ VS+ GN S T+ GK LK+ Sbjct: 628 LEKNESISNLIPWNQEYDNHWLITVSAFGNIKKTALSAFRNITKNGKIGLKL 679 >gi|312897368|ref|ZP_07756792.1| DNA gyrase, A subunit [Megasphaera micronuciformis F0359] gi|310621429|gb|EFQ04965.1| DNA gyrase, A subunit [Megasphaera micronuciformis F0359] Length = 821 Score = 408 bits (1049), Expect = e-111, Method: Compositional matrix adjust. Identities = 232/611 (37%), Positives = 359/611 (58%), Gaps = 38/611 (6%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 + V V L ++ Y+ YA+S I RA+PD+RDG KPVHRRI++AM E G+ +KK Sbjct: 7 DKVLPVCLEHEMQNSYIDYAMSVIITRALPDVRDGLKPVHRRILYAMHEAGMTPNKPYKK 66 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 SARIVGEV+GK HPHGD SVYD+ VRLAQ F RYPL+ G GNFG++DGDSAAA RYTE Sbjct: 67 SARIVGEVLGKYHPHGDSSVYDATVRLAQDFSTRYPLVDGHGNFGSVDGDSAAAMRYTEV 126 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 RM ++ +L +D++ VDF Y+ EP V P+K PNLL NG++GIAVGMAT+IP H Sbjct: 127 RMAKITGEMLADIDKETVDFMPNYDGSLQEPTVLPAKIPNLLVNGSAGIAVGMATNIPPH 186 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 N+ E+ + + +ID+P++++++L+ I GPDFPTG I+ RE I+++Y GRG ++R+ Sbjct: 187 NLGEVIDGLVMMIDDPDVTLDQLMTKIQGPDFPTGAKIL-GREGILKAYSTGRGSVKMRS 245 Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314 +E + +G IV+TEIPYQV K+R+IE IA+L K I + +RDES ++ Sbjct: 246 CAEIEPMSKGKNRIVITEIPYQVNKARVIESIADLSRNKDIDGITALRDESDRKGMRIVI 305 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 ++PD+++ ++ + ++ F + M L G P+V+ L +L +L HR+ V+ R Sbjct: 306 ELRADVNPDIILNKLYKHTQLQETFGVIMLALVDGH-PRVLTLREVLAYYLEHRKVVVTR 364 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAI 431 R F + R IL+GLLIA +IDE+I IR ++ K ++S+F L+E Q AI Sbjct: 365 RCRFELDKALARAHILEGLLIALDHIDEVIKTIRESATDEIAKNALMSKFDLSEKQSIAI 424 Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491 L++RLR L LE +I+ E L + + S+L + I E+ E K+ ++ Sbjct: 425 LDMRLRRLTGLERDKIQEEYAELEKTIDYLRSVLADEHKLMGIIRDELLETKKKYAD--- 481 Query: 492 LGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSLKS---HSVD-----LSA 542 +RRT AD + L + +I E + + ++ RG+I+ + + H+ + + Sbjct: 482 --KRRTQI----EADTSELNVEDLIPNERMVLTLTRRGYIKRINANVYHTQNKGGRGIKG 535 Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRG----------HG 587 + K+ D++ L+ + +L + G K+Y +P N + +G G Sbjct: 536 MATKDEDAVNHLLYTSAHNTVLFFTNFGRVYRLKSYEIPEANSRNSKGIAAINLLPLSQG 595 Query: 588 EAIQLLIDLNH 598 E + LID++ Sbjct: 596 EKVNALIDVDQ 606 >gi|303252524|ref|ZP_07338687.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307245101|ref|ZP_07527194.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307247273|ref|ZP_07529322.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|307254056|ref|ZP_07535903.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307258512|ref|ZP_07540249.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|302648492|gb|EFL78685.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|306853990|gb|EFM86202.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306856246|gb|EFM88400.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|306862981|gb|EFM94928.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306867416|gb|EFM99267.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 11 str. 56153] Length = 896 Score = 408 bits (1049), Expect = e-111, Method: Compositional matrix adjust. Identities = 239/606 (39%), Positives = 351/606 (57%), Gaps = 55/606 (9%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 +++ VS+ L+ YL YA+S I RA+PD+RDG KPVHRR++ +M + F K Sbjct: 6 KDITPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTFNRPHVK 65 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 SAR+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG+IDGD+ AA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRYTEV 125 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 RM ++ + +L +D++ VD+ Y+ ++ P V P+K P LL NG+SGIAVGMAT+IP H Sbjct: 126 RMQKITQELLTDLDKETVDYSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATNIPPH 185 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 N+ E+ + LA I+N +I IE+L+ +I GPDFPTG II R+ I E+YR GRG VRA Sbjct: 186 NLNEVLDGCLAYIENEQIGIEELMRFIPGPDFPTGAII-NGRKGIEEAYRTGRGKVYVRA 244 Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314 + VE +G IVVTE+PYQV K++LIEKIAEL+ K+I + I+D S + ++ Sbjct: 245 KASVETTEKGREQIVVTELPYQVNKAKLIEKIAELVKDKKIEGISGIQDHSDKKGISIVI 304 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 R ++++ ++ L+ M+ F +NM L G+ P+V+ L I++ ++ HRREV+ R Sbjct: 305 EVKRDAVGEVVLNHLYSLTQMQVTFGINMVALDHGQ-PKVLNLKQIIEAFVKHRREVVTR 363 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN------------------------- 409 R+ F ++ R IL+GL IA NID +I +IRN Sbjct: 364 RTIFELRKARERAHILEGLAIALANIDPVIELIRNSKTADEAREGLLARAWALGNVAPML 423 Query: 410 ----------EDKPKPVMV--SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457 ED P+ + V ++ L+E Q AIL LRL L LE +I E LL E Sbjct: 424 EAAGVDASRPEDLPENLGVRDGQYYLSEAQARAILELRLHRLTGLEHEKIVDEYKALLTE 483 Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517 ++ +L+S ++ I E+ +VK F RRT E++ A + +I + Sbjct: 484 IGELLRILSSAERLMEVIREELEKVKAEFGDE-----RRT---EITAASGDINMEDLIAQ 535 Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569 E + V +S+ G+++ + + SA KE D ++ L A+T D IL S+ Sbjct: 536 EDVVVTLSHAGYVKYQPLSDYEAQRRGGKGKSATKMKEDDFIEKLLVANTHDTILCFSSR 595 Query: 570 GKAYTL 575 G+ Y L Sbjct: 596 GRLYQL 601 >gi|167856405|ref|ZP_02479129.1| DNA gyrase subunit A [Haemophilus parasuis 29755] gi|167852465|gb|EDS23755.1| DNA gyrase subunit A [Haemophilus parasuis 29755] Length = 888 Score = 408 bits (1049), Expect = e-111, Method: Compositional matrix adjust. Identities = 240/607 (39%), Positives = 355/607 (58%), Gaps = 57/607 (9%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 +++ +S+ L+ YL YA+S I RA+PD+RDG KPVHRR++ +M + G + K Sbjct: 6 KDIIPISIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQSGNVSSKPYVK 65 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 SAR+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG+IDGD+ AA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRYTEV 125 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 RM ++ + +L +D++ VDF Y+ ++ P V P+K P LL NG+SGIAVGMAT+IP H Sbjct: 126 RMQKITQELLTDLDKETVDFSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATNIPPH 185 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 N+ E+ LA I+N +I+IE+L+++I GPDFPT II R+ I ++YR GRG VRA Sbjct: 186 NLNEVLNGCLAYIENEQITIEELMQHIPGPDFPTAAII-NGRKGIEDAYRTGRGKVYVRA 244 Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVL 313 + VE +G IVVTE+PYQV K LIEKIAEL+ KRI + I D S + + IV+ Sbjct: 245 KASVETTSKGREQIVVTELPYQVNKKNLIEKIAELVRDKRIEGISSIEDYSDKKGISIVI 304 Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373 KN ++ ++++ +++ L+ M+ F +NM L G+ P++ L I++ ++ HRREV+ Sbjct: 305 EIKNNAVG-EVVLNNLYALTQMQVTFGINMVALDHGQ-PKIFNLKQIIEAFVMHRREVVT 362 Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE-----------DKP--------- 413 RR+ F ++ R IL+GL IA NID +I +IRN D+P Sbjct: 363 RRTVFELRKARERAHILEGLAIALANIDPVIELIRNSKTADEAREGLLDRPWSLGNVAPM 422 Query: 414 ---------KP--------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLA 456 +P V ++ L+E+Q AIL LRL L LE +I E LL Sbjct: 423 LEAAGVDASRPEDLASEFGVRDGQYYLSEDQARAILELRLHRLTGLEHEKIVDEYKELLV 482 Query: 457 EKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE 516 E ++ +LNS ++ I E+ ++K F RRT E++ A + +I Sbjct: 483 EISELLHILNSSERLMEVIREELEKIKAEFGDE-----RRT---EITAASGDINLEDLIA 534 Query: 517 KEPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568 +E + V +S+ G+++ + + SA KE D ++ L A+T D IL S+ Sbjct: 535 QEDVVVTLSHAGYVKYQPLSDYEAQRRGGKGKSATKMKEDDFIEKLLVANTHDTILCFSS 594 Query: 569 DGKAYTL 575 G+ Y L Sbjct: 595 CGRLYQL 601 >gi|119953223|ref|YP_945432.1| DNA gyrase subunit A [Borrelia turicatae 91E135] gi|119861994|gb|AAX17762.1| DNA gyrase subunit A [Borrelia turicatae 91E135] Length = 815 Score = 408 bits (1049), Expect = e-111, Method: Compositional matrix adjust. Identities = 253/740 (34%), Positives = 413/740 (55%), Gaps = 79/740 (10%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 +E + + + ++ YL YA+S I RA+PD+RDG KPVHRRI+++M EMGL AFK Sbjct: 12 KEQILNIKIEDEVKTSYLNYAMSVIVSRALPDVRDGLKPVHRRILYSMHEMGLRADKAFK 71 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 K+ RIVG+V+GK HPHGDQS+Y++LVRLAQ F RYP++SGQGNFG+IDGD AA RYTE Sbjct: 72 KAGRIVGDVLGKYHPHGDQSIYEALVRLAQDFSLRYPIVSGQGNFGSIDGDPPAAMRYTE 131 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 ARM ++AE +++ +D VDFR Y++ EP V P+ FP LL NG+SGIAVGMAT++ Sbjct: 132 ARMAKIAEELVKDIDRQTVDFRANYDDSLLEPEVLPAAFPFLLVNGSSGIAVGMATNMAP 191 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN++EIC+A + ++++ +S+ L+ + GPDFPT I+ + ES+V++Y G+G +R Sbjct: 192 HNLREICDAIVYMLNHDSVSVYDLIAIVKGPDFPTYAEIIYN-ESLVKAYTTGKGSVVIR 250 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIV 312 +R+ +EE I++T+IPY V KS L+ KIA LI +++ + DIRDES E +RIV Sbjct: 251 SRYHIEEKREDHIAIIITQIPYAVNKSSLLMKIAFLIKEEKLEGISDIRDESDREGIRIV 310 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 L K + DP ++M ++ +++ F +N N+ + +P+ + L ++ E++ HR+E++ Sbjct: 311 LEIK-KGFDPHVVMNLLYEYTELRKNFSIN-NLALVNGIPKQLNLKELISEFIDHRKEIV 368 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVD 429 RR F ++ + IL+GL I+ +ID +I IIR K ++ F+L+E Q + Sbjct: 369 RRRVEFDLKKARDKAHILEGLNISLRHIDRVIEIIRFSRLVKDAKECIIKEFNLSEIQAN 428 Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489 +IL+++L+ L LE +++ E +L + + +L S ++ N +RE EI + S Sbjct: 429 SILDMKLQKLTSLEIEKLEEEFKIVLDLIKDYEDILVSPERVVNI----VRE--EIINLS 482 Query: 490 TDLG-RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL----- 543 G RRT K ++ M ++E + V+++ +G+I+ + L + Sbjct: 483 LKFGDERRTKIIYDEEVLKTSMSDLM-QRENVIVILTKQGFIKRILQDEYKLQGIGGKGL 541 Query: 544 ---HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNH 598 ++ D + IAL +T D +L++S +GK Y + A + S G+ I+ LI+L Sbjct: 542 GSFDLQDKDQVNIALCVNTHDFLLMISNEGKLYVINAYGIKDSSRTSKGQNIRELINLGE 601 Query: 599 NQDIV---------------------------------------------------TAFV 607 ++I+ +A + Sbjct: 602 TEEILAIKNCNELSLDNYLLITTANGKIARIETEGFKTVKSRGVIVIKLDDKDFVTSAEI 661 Query: 608 YDSTCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSSEEKM-KLVVKVTGDHVAVV 664 K++ +S KGNAF ++I R +G + +KV + + K + G H+ +V Sbjct: 662 VSKNDKIICISKKGNAFAFNSNDIRLTHRGTQGVSGMKVREGDMLIKALSAKQGSHLLIV 721 Query: 665 GENRKLLIFSIDQIPEMSRG 684 EN I ++ E+ RG Sbjct: 722 SENGYGKRLEISRVTELKRG 741 >gi|313500067|gb|ADR61433.1| DNA gyrase subunit A [Pseudomonas putida BIRD-1] Length = 919 Score = 408 bits (1049), Expect = e-111, Method: Compositional matrix adjust. Identities = 235/601 (39%), Positives = 361/601 (60%), Gaps = 57/601 (9%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 V++ L + YL YA+S I RA+PD RDG KPVHRR+++AMSE+G D+ +KKSAR+V Sbjct: 11 VNIEDELRQSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMSELGNDWNKPYKKSARVV 70 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG++DGD+AAA RYTE RMT++ Sbjct: 71 GDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRYTEVRMTKL 130 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A +L + ++ VD+ Y+ + P V P++ PNLL NG+SGIAVGMAT+IP HN+ E+ Sbjct: 131 AHELLADLHKETVDWVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHNLGEV 190 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 + LALIDNPE++I++L+++I GPDFPT GII R+ I+E+YR GRG +RAR +E Sbjct: 191 IDGCLALIDNPEVTIDELMQFIPGPDFPTAGII-NGRQGIIEAYRTGRGRIYMRARSEIE 249 Query: 260 EVGR--GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317 ++ + G IV+TE+PYQ+ K+RLIEKIAEL+ K+I + ++RDES +D ++ Sbjct: 250 DIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKIEGITELRDESDKDGMRIVIELR 309 Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377 R P++++ +++ + +++ F +N+ L GR P+++ L +L+ ++ HRREV+ RR+ Sbjct: 310 RGEVPEVVLNNLYQQTQLQSVFGINVVALVDGR-PRLLNLKDLLEAFVRHRREVVTRRTV 368 Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK----------------PVMVSR- 420 F ++ R IL+G +A NID +IA+I+ P VMV R Sbjct: 369 FELRKARERGHILEGQAVALSNIDPVIALIKASPTPSEAKEALVSTPWESSAVQVMVERA 428 Query: 421 --------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEK 460 + L+ Q AIL+LRL L LE ++ +E +L + + Sbjct: 429 GADACRPEDLPEQYGLHDGKYFLSPEQAQAILDLRLHRLTGLEHEKLLAEYQEILEQIGE 488 Query: 461 IDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI 520 + +L+S ++ I E+ ++ + RRT E+ A MI +E Sbjct: 489 LIRILSSAERLMEVIREELEAIRAEYGDV-----RRT---EILNASHDLNYGDMIPEEER 540 Query: 521 TVVISNRGWIRS--LKSHSVDL------SALHFKEGDSLKIALHAHTTDRILLLSTDGKA 572 V IS+ G+ ++ L ++ SA K+ D ++ L A++ +LL S+ GK Sbjct: 541 VVTISHGGYAKTQPLSAYQAQRRGGKGKSATGVKDEDYIEHLLVANSHATLLLFSSKGKV 600 Query: 573 Y 573 Y Sbjct: 601 Y 601 >gi|46143842|ref|ZP_00133972.2| COG0188: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126207774|ref|YP_001052999.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae L20] gi|126096566|gb|ABN73394.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 5b str. L20] Length = 896 Score = 408 bits (1049), Expect = e-111, Method: Compositional matrix adjust. Identities = 239/606 (39%), Positives = 351/606 (57%), Gaps = 55/606 (9%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 +++ VS+ L+ YL YA+S I RA+PD+RDG KPVHRR++ +M + F K Sbjct: 6 KDITPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTFNRPHVK 65 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 SAR+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG+IDGD+ AA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRYTEV 125 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 RM ++ + +L +D++ VD+ Y+ ++ P V P+K P LL NG+SGIAVGMAT+IP H Sbjct: 126 RMQKITQELLTDLDKETVDYSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATNIPPH 185 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 N+ E+ + LA I+N +I IE+L+ +I GPDFPTG II R+ I E+YR GRG VRA Sbjct: 186 NLNEVLDGCLAYIENEQIGIEELMRFIPGPDFPTGAII-NGRKGIEEAYRTGRGKVYVRA 244 Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314 + VE +G IVVTE+PYQV K++LIEKIAEL+ K+I + I+D S + ++ Sbjct: 245 KASVETTEKGREQIVVTELPYQVNKAKLIEKIAELVKDKKIEGISGIQDHSDKKGISIVI 304 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 R ++++ ++ L+ M+ F +NM L G+ P+V+ L I++ ++ HRREV+ R Sbjct: 305 EVKRDAVGEVVLNHLYSLTQMQVTFGINMVALDHGQ-PKVLNLKQIIEAFVKHRREVVTR 363 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN------------------------- 409 R+ F ++ R IL+GL IA NID +I +IRN Sbjct: 364 RTIFELRKARERAHILEGLAIALANIDPVIELIRNSKTADEAREGLLARAWALGNVAPML 423 Query: 410 ----------EDKPKPVMV--SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457 ED P+ + V ++ L+E Q AIL LRL L LE +I E LL E Sbjct: 424 EAAGVDASRPEDLPENLGVRDGQYYLSEAQARAILELRLHRLTGLEHEKIVDEYKALLTE 483 Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517 ++ +L+S ++ I E+ +VK F RRT E++ A + +I + Sbjct: 484 IGELLRILSSAERLMEVIREELEKVKAEFGDE-----RRT---EITAASGDINMEDLIAQ 535 Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569 E + V +S+ G+++ + + SA KE D ++ L A+T D IL S+ Sbjct: 536 EDVVVTLSHAGYVKYQPLSDYEAQRRGGKGKSATKMKEDDFIEKLLVANTHDTILCFSSR 595 Query: 570 GKAYTL 575 G+ Y L Sbjct: 596 GRLYQL 601 >gi|260363418|ref|ZP_05776268.1| DNA gyrase/topoisomerase IV, A subunit [Vibrio parahaemolyticus K5030] gi|308112929|gb|EFO50469.1| DNA gyrase/topoisomerase IV, A subunit [Vibrio parahaemolyticus K5030] Length = 461 Score = 408 bits (1049), Expect = e-111, Method: Compositional matrix adjust. Identities = 209/465 (44%), Positives = 317/465 (68%), Gaps = 8/465 (1%) Query: 9 SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68 S + + V+ + +R E+ YL Y++ I +RA+P + DG KPV RRII+AMSE+GL Sbjct: 2 STEITYDGVEQLPMRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61 Query: 69 GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAA 127 A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S A Sbjct: 62 SAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFA 121 Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187 A RYTEA++++ AE++L + + V+++ ++ EP + P++ P++L NG +GIAVGM Sbjct: 122 AMRYTEAKLSKFAEVLLGELGQGTVEWQPNFDGTMKEPQMLPARLPHILLNGVTGIAVGM 181 Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247 AT IP HNV+E+ +A + LIDNP+ + ++++++ GPD+PT I+ + I + YR GR Sbjct: 182 ATDIPPHNVREVADATIHLIDNPKAELPEVMQFVKGPDYPTEAEIISPQAEIEKIYRNGR 241 Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307 G ++RA W E GS IV+T IP+QV S+L+E+IA + AK++P++ED+RDES Sbjct: 242 GSIKMRAVWHKE----GS-DIVITSIPHQVSGSKLLEQIANQMRAKKLPMVEDLRDESDH 296 Query: 308 D--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365 + RIV+ P++ +D DLLM +F +D+E + +N+N++ + PQV L IL EW+ Sbjct: 297 ENPTRIVIVPRSNRVDCDLLMNHLFASTDLERSYRVNLNMIGLDNRPQVKGLVQILSEWI 356 Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425 RR + RR +R+ + R+ IL+GLL+AYLN+DE+I IIR ED PK V++ RF +T+ Sbjct: 357 EFRRSTVRRRLQYRLDKVMARLHILEGLLVAYLNLDEVIEIIRTEDDPKAVLMERFGITD 416 Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQ 470 Q DAIL+ +LR L KLEE +I+ E D L E+EK++ LL S ++ Sbjct: 417 IQADAILDTKLRHLAKLEEMKIRGEQDELEKEREKLEQLLGSERR 461 >gi|254427390|ref|ZP_05041097.1| DNA gyrase, A subunit [Alcanivorax sp. DG881] gi|196193559|gb|EDX88518.1| DNA gyrase, A subunit [Alcanivorax sp. DG881] Length = 935 Score = 408 bits (1049), Expect = e-111, Method: Compositional matrix adjust. Identities = 248/643 (38%), Positives = 374/643 (58%), Gaps = 65/643 (10%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 V V++ L++ YL YA+S I RA+PD+RDG KPVHRR++ AM E+ D+ A+KKSA Sbjct: 8 VTPVNIEDELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELSNDWNKAYKKSA 67 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG+IDGDSAAA RYTE RM Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVRM 127 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 ++A +L +D++ VDF D Y+ + P V P++ PNLL NG+SGIAVGMAT+IP HN+ Sbjct: 128 AKIAHELLADLDKETVDFVDNYDGTEKIPDVMPTRVPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ + LALID+ ++ + L+EYI GPDFPT GII R IV++YR GRG +RAR Sbjct: 188 GEVVDGCLALIDDDSLTPDDLMEYIKGPDFPTAGII-NGRAGIVQAYRTGRGRVYMRARA 246 Query: 257 CVEEVGR-GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315 +E + G I+VTEIPYQV K+RLIEKIAEL+ K+I + ++RDES ++ V+ Sbjct: 247 EIEATDKSGKEAIIVTEIPYQVNKARLIEKIAELVKDKKIEGITELRDESDKEGMRVVIE 306 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 R + ++++ +++ + ME+ F +N L G+ P+++ L +L ++ HRREV+ RR Sbjct: 307 LRRGENAEVVLNNLYQQTQMESVFGINTVALVDGQ-PKILNLRELLDAFIRHRREVVTRR 365 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED--------------KPKPV--MVS 419 + F ++ + +L+GL +A NID +I +I+ KP V M+ Sbjct: 366 TVFELRKAREKAHLLEGLAVALSNIDPVIELIKASPSGAEAKAKLLDKGWKPGDVLQMLE 425 Query: 420 R----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457 R + L+ Q AIL+LRL+ L LE ++ ++ LL + Sbjct: 426 RAGGENAARPDGLDEQYGLVDGLYHLSPEQAQAILDLRLQKLTGLEREKLINDYQELLEQ 485 Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517 ++ +L + ++ I E++ V+E ++ RR+ SR D + + +I + Sbjct: 486 IAELLKILGNPERLMEVIREELQAVREEYADE-----RRSEIV-ASRQDFS--MEDLIAE 537 Query: 518 EPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569 E + V +SN G+ R+ K SA K+ D ++ L A T D +LL + Sbjct: 538 ETVVVTLSNGGYAKMQPIDTYRAQKRGGRGKSAGQLKDEDYVEHLLVAGTHDTLLLFTDA 597 Query: 570 GK-----AYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV 607 GK + LP G S G+ I L+ N++ +TA + Sbjct: 598 GKVFWLRTFELPQGGRAS---RGKPIVNLLPALGNEERITAIL 637 >gi|76802388|ref|YP_327396.1| DNA gyrase subunit A [Natronomonas pharaonis DSM 2160] gi|76558253|emb|CAI49841.1| DNA gyrase subunit A [Natronomonas pharaonis DSM 2160] Length = 821 Score = 408 bits (1049), Expect = e-111, Method: Compositional matrix adjust. Identities = 238/626 (38%), Positives = 372/626 (59%), Gaps = 39/626 (6%) Query: 5 NISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEM 64 ++ ++ + E ++ V + +E+ Y+ YA+S I RA+PD RDG KPV RRI++AM EM Sbjct: 4 DVPDTPDVPAEEIEPVRIEDEMEQSYIDYAMSVIVGRALPDARDGLKPVQRRILYAMEEM 63 Query: 65 GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124 G+ + +KS+ IVGE +G HPHGD ++YD+L R+AQ F RYPL+ GQGNFG++DGD Sbjct: 64 GVTSRSGHRKSSSIVGETMGNYHPHGDSAIYDALARMAQDFSLRYPLVDGQGNFGSVDGD 123 Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184 AA RYTEARM +AE +L +D+D VDF Y++ +EPVV P++ PNLL NG SGIA Sbjct: 124 PPAAMRYTEARMAPIAEELLADIDKDTVDFESNYDDRLTEPVVLPARVPNLLVNGASGIA 183 Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLE------YIIGPDFPTGGIIVESRES 238 VGM+T+IP HN+ E+ +AA+ LIDNP+ ++ L++ YI GPDFPTG IV +RE Sbjct: 184 VGMSTNIPPHNLGEVIDAAIHLIDNPDCAVADLIDTPDSDGYIKGPDFPTGANIV-NREG 242 Query: 239 IVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLL 298 I ++Y GRG RVRA +E RG IVVTE+PYQ K+R IE+IAE + +I + Sbjct: 243 IWDAYTEGRGRLRVRAEMDIERTDRGGDRIVVTELPYQENKARRIERIAEDVQEGKIEGI 302 Query: 299 EDIRDESAED-VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRV---PQV 354 DIRDES D VR+V+ K R + D++ + +E +++S+ V P+V Sbjct: 303 RDIRDESDRDGVRVVIECK-RGSNADVVKNQL-----LEHHLENTFSIISLALVDDQPRV 356 Query: 355 MPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK 414 + L +L+ ++ HRREV+ RRS F +Q R IL+G L+A N+D+++ I+N D Sbjct: 357 LNLKELLEAFVGHRREVVRRRSQFELQEAKDRAHILEGRLVALDNVDDVVDHIQNSDDRD 416 Query: 415 PVMVS---RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQ 471 M + + L+E+Q + I+ ++L SL +E +I++E +++ AE E+++++LN + Sbjct: 417 AAMAALRKAYDLSEDQAEHIVRMQLGSLTSMEAGEIETEYEDVQAEIERLETILNDESEL 476 Query: 472 WNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR 531 I E+R++K ++ R+T E + + ++ +I +E + VV++ +++ Sbjct: 477 LGVIKDELRDIKAEYADE-----RQTDVIEDA---GSVTREDLIAEEEVVVVVTEEDYVK 528 Query: 532 SLKSHSVD--------LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--L 581 + D + KEGD + A T D +L + G+ Y L L + Sbjct: 529 RMPLSEFDPQHRGGKGIIGSRPKEGDRVSTVFTASTHDYLLCFTNQGQVYRLKVFELPEM 588 Query: 582 SGRGHGEAIQLLIDLNHNQDIVTAFV 607 G + ++DLN ++I TA V Sbjct: 589 GRTARGTSAVNVLDLNDGEEI-TAVV 613 >gi|116490132|ref|YP_809657.1| DNA gyrase subunit A [Oenococcus oeni PSU-1] gi|116090857|gb|ABJ56011.1| DNA gyrase subunit A [Oenococcus oeni PSU-1] Length = 866 Score = 408 bits (1049), Expect = e-111, Method: Compositional matrix adjust. Identities = 229/630 (36%), Positives = 379/630 (60%), Gaps = 36/630 (5%) Query: 8 NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67 N+N + +K L + +L+YA+S I RA+PD+RDG KPVHRRI+ M+E+G+ Sbjct: 6 NNNFTPDSRIKDTDLNKTMRTSFLSYAMSVIVARALPDVRDGLKPVHRRILFGMNELGVT 65 Query: 68 FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAA 127 KKSARIVG+V+GK HPHGD ++Y+SLVR+AQPF RYPL+ G GNFG++DGD AA Sbjct: 66 PDKPHKKSARIVGDVMGKFHPHGDSAIYESLVRMAQPFSYRYPLVDGHGNFGSVDGDPAA 125 Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187 A RYTEAR++++A +L+ +++ VDF+ +Y+ ++ EPVV PS+FPNLL NG GIAVGM Sbjct: 126 AMRYTEARLSKIALEMLRDINKGTVDFQPSYDGDNREPVVLPSRFPNLLVNGAQGIAVGM 185 Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247 AT+IP+HN++E+ A L+ NP+ ++ L+E + GPDFPTG I++ + I +Y GR Sbjct: 186 ATNIPTHNLREVIAAIHVLMANPDATVADLMEALPGPDFPTGAIVM-GKSGIRRAYETGR 244 Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307 G VR++ +E G I V+E+PY V K++LIE+I EL++ K++ + IRDES + Sbjct: 245 GSVTVRSKVDIETSSSGHERISVSELPYMVNKAKLIERIRELVLEKKLEGITAIRDESDQ 304 Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367 + + R + ++++ +++ + ++T F NM ++ G+ P+ M L IL +L H Sbjct: 305 NGLRIAIDVGRDANANVVLNNLYKQTLLQTSFSFNMIAINHGK-PETMSLKQILVAYLEH 363 Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLT 424 +RE++ RR+ F ++ R IL+GL IA +ID II +IR+ + K +++R+ L+ Sbjct: 364 QREIIRRRTEFDLKKAQDRAHILEGLRIALDHIDAIIELIRSSNTAEIAKNELINRYQLS 423 Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484 + Q AIL++RL L LE +I++E +LL E +L + ++ +QI + E+ + Sbjct: 424 DKQAQAILDMRLVRLTGLERGKIETEYTDLLKSIEDFKDIL-AKPERIDQIIYQ--ELLD 480 Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKS---HSVD-- 539 I +K D R +VS + + +I++E + + ++++G+I+ L + H+ + Sbjct: 481 IANKFGDERRTELQVGDVS----SIEDEDLIDEEEVLISLTHKGYIKRLSTSEFHTQNRG 536 Query: 540 ---LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL---------------PAGNLL 581 + ++ + D ++ + T D +L S GK Y + P NLL Sbjct: 537 GRGVKGMNTHDDDFVEQLVSTSTHDTLLFFSDQGKVYKMKGYEVPEYGRQAKGIPVINLL 596 Query: 582 SGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611 G GE +Q +I++ + F++ +T Sbjct: 597 -GLDAGERVQAVINVRGDAATSKDFLFFTT 625 >gi|322832014|ref|YP_004212041.1| DNA gyrase, A subunit [Rahnella sp. Y9602] gi|321167215|gb|ADW72914.1| DNA gyrase, A subunit [Rahnella sp. Y9602] Length = 883 Score = 408 bits (1049), Expect = e-111, Method: Compositional matrix adjust. Identities = 249/636 (39%), Positives = 372/636 (58%), Gaps = 60/636 (9%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + +++ L+ YL YA+S I RA+PD+RDG KPVHRR++ AM+ +G D+ A+KKSA Sbjct: 8 ITPINIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKKSA 67 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG++DGDSAAA RYTE RM Sbjct: 68 RVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRM 127 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 +++A +L ++++ VDF Y+ + P V P++ PNLL NG+SGIAVGMAT+IP HN+ Sbjct: 128 SKIAHELLADLEKETVDFVPNYDGTEQIPSVMPTRIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ LA I++ ISIE L+E+I GPDFPT II R I E+YR GRG +RAR Sbjct: 188 TEVINGCLAYIEDENISIEGLMEHIPGPDFPTAAII-NGRRGIEEAYRTGRGKIYIRARA 246 Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314 VE + G I+V EIPYQV K+RLIEKIAEL+ KR+ + +RDES +D +RIV+ Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K ++ ++++ +++ L+ ++T F +NM L G+ P+++ L IL ++ HRREV+ R Sbjct: 307 IKRDAVG-EVVLNNLYSLTQLQTSFGINMVALHQGQ-PKILGLKEILSAFVRHRREVVTR 364 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----------- 420 R+ F ++ R IL+ L IA NID II +IR P K +V+R Sbjct: 365 RTIFELRKARDRAHILEALAIALANIDPIIELIRAAPTPAEAKAGLVARSWDLGNVSAML 424 Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457 + LTE Q AIL+LRL+ L LE ++ E LL + Sbjct: 425 ASAGDDAARPEWLEPQFGIHDGKYFLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLVQ 484 Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517 ++ +L++ + I E+ +++ ++ RRT E++ + +I + Sbjct: 485 IAELLFILSNPDRLMEVIREELEAIRDQYNDP-----RRT---EITANTSDINIEDLINQ 536 Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569 E + V +S++G+++ + + SA KE D + L A+T D IL+ S+ Sbjct: 537 EDVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILMFSSR 596 Query: 570 GKAYTLPAGNLL-SGRG-HGEAIQLLIDLNHNQDIV 603 G+ Y + L + RG G I L+ L N+ I Sbjct: 597 GRLYWMKVYQLPEASRGARGRPIVNLLPLEPNERIT 632 >gi|86150440|ref|ZP_01068665.1| DNA gyrase, A subunit [Campylobacter jejuni subsp. jejuni CF93-6] gi|85839035|gb|EAQ56299.1| DNA gyrase, A subunit [Campylobacter jejuni subsp. jejuni CF93-6] Length = 863 Score = 408 bits (1049), Expect = e-111, Method: Compositional matrix adjust. Identities = 237/607 (39%), Positives = 377/607 (62%), Gaps = 32/607 (5%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 + +++ V + +++ YL Y++S I RA+PD RDG KPVHRRI++AM F Sbjct: 8 DSDIELVDIENSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFV 67 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSARIVG VIG+ HPHGD +VYD+LVR+AQ F RYP I+GQGNFG+IDGDSAAA RYTE Sbjct: 68 KSARIVGAVIGRYHPHGDIAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTE 127 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 A+M++++ +L+ +D+D VDF Y+ +SEP V PS+ PNLL NG+SGIAVGMAT+IP Sbjct: 128 AKMSKLSHELLKDIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPP 187 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 H++ E+ + L L+DN + S+E+++++I GPDFPTGGII ++ I+E+YR GRG +VR Sbjct: 188 HSLNELIDGLLYLLDNKDASLEEIMQFIKGPDFPTGGIIY-GKKGIIEAYRTGRGRVKVR 246 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIV 312 A+ +E+ IV+ E+PYQ K+RLIE+IAEL+ ++I + ++RDES E +R+V Sbjct: 247 AKTHIEK-KTNKDVIVIDELPYQTNKARLIEQIAELVKERQIEGISEVRDESNKEGIRVV 305 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 + K ++ ++++ ++F + ME+ F + M + + P++ L +L +L HR+ V+ Sbjct: 306 IELKREAM-SEIVLNNLFKSTTMESTFGVIMLAIH-NKEPKIFSLLELLNLFLTHRKTVI 363 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLTENQVD 429 RR+ F +Q R IL+GL IA NIDE+IA+I+N + + +V++F L+E Q + Sbjct: 364 IRRTIFELQKARARAHILEGLKIALDNIDEVIALIKNSSDNNTARDSLVAKFGLSELQAN 423 Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489 AIL+++L L LE +I++EL L+ E +++ +L S N I E++E++ F Sbjct: 424 AILDMKLGRLTGLEREKIENELAELMKEIARLEEILKSETLLENLIRDELKEIRSKF--- 480 Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS-------- 541 D+ R ++ + +I E + V I++RG+I+ + S + Sbjct: 481 -DVPR----ITQIEDDYDDIDIEDLIPNENMVVTITHRGYIKRVPSKQYEKQKRGGKGKL 535 Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDL 596 A+ + D ++ A+T D ++ ++ G K Y +P G S G+A+ LI+L Sbjct: 536 AVTTYDDDFIESFFTANTHDTLMFVTDRGQLYWLKVYKIPEG---SRTAKGKAVVNLINL 592 Query: 597 NHNQDIV 603 + I+ Sbjct: 593 QAEEKIM 599 >gi|294637123|ref|ZP_06715433.1| DNA gyrase, A subunit [Edwardsiella tarda ATCC 23685] gi|291089683|gb|EFE22244.1| DNA gyrase, A subunit [Edwardsiella tarda ATCC 23685] Length = 718 Score = 408 bits (1049), Expect = e-111, Method: Compositional matrix adjust. Identities = 245/605 (40%), Positives = 357/605 (59%), Gaps = 60/605 (9%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + V++ L+ YL YA+S I RA+PD+RDG KPVHRR++ AM+ +G D+ +KKSA Sbjct: 8 ITPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSA 67 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG+IDGDSAAA RYTE RM Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVRM 127 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 ++A +L ++++ VD+ Y+ + P V P+K PNLL NG++GIAVGMAT+IP HN+ Sbjct: 128 AKIAHELLADLEKETVDYVPNYDGTEQIPDVLPTKVPNLLVNGSAGIAVGMATNIPPHNL 187 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ LA ID+ I+IE L+E+I GPDFPT II R I E+YR GRG VRAR Sbjct: 188 TEVINGCLAYIDDENITIEGLMEHIPGPDFPTAAII-NGRRGIEEAYRTGRGKIYVRARA 246 Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314 +E + G IVV EIPYQV K+RLIEKIAEL+ KR+ + +RDES +D +RIV+ Sbjct: 247 EIETDAKNGRETIVVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K ++ ++++ +++ + M+ F +NM L G+ P+++ L L+ ++ HRREV+ R Sbjct: 307 IKRDAVG-EVVLNNLYSQTQMQVSFGINMVALHQGQ-PKLLTLKECLEAFVRHRREVVTR 364 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----------- 420 R+ F ++ R IL+GL IA NID II +IR+ P K +VS Sbjct: 365 RTIFELRKARERAHILEGLAIALANIDPIIEMIRHAPTPAEAKAALVSHAWALGNVAAML 424 Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457 + LTE Q AIL+LRL+ L LE ++ E LL + Sbjct: 425 ERAGDDAARPEWLEPQYGIRDGHYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKLLLEQ 484 Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ-QAMIE 516 + +L S ++ I E+ ++E F + RRT A+ A + + +IE Sbjct: 485 IAALIFILQSPERLMEVIREELIAIREQFGDA-----RRTEIT----ANTADINIEDLIE 535 Query: 517 KEPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568 +E + V +S++G+++ + + SA KE D ++ L A+T D IL S+ Sbjct: 536 QEDVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIERLLVANTHDTILCFSS 595 Query: 569 DGKAY 573 G+ Y Sbjct: 596 RGRMY 600 >gi|32448345|gb|AAO16801.1| GyrA [Streptococcus pneumoniae] Length = 822 Score = 408 bits (1049), Expect = e-111, Method: Compositional matrix adjust. Identities = 235/613 (38%), Positives = 369/613 (60%), Gaps = 40/613 (6%) Query: 12 LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71 + + N+ V+L ++ ++ YA+S I RA PD+RDG KPVHRRI++ M+E+G+ Sbjct: 1 MQDRNLVNVNLTKEMKTSFIDYAMSVIVARARPDVRDGLKPVHRRILYGMNELGVTPDKP 60 Query: 72 FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131 KKSARI G+V+GK HPHGD S+Y+++VR+AQ + RY L+ G GNFG++DGD AAA RY Sbjct: 61 HKKSARITGDVMGKYHPHGDFSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRY 120 Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191 TEARM+++A +L+ ++++ VDF D Y+ + EP+V P++FPNLL NG +GIAVGM T+I Sbjct: 121 TEARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMGTNI 180 Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251 P HN+ E +A ++DNPE++ + L+E + GPDFPTG +++ + I ++Y G+G Sbjct: 181 PPHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVM-GKSGIHKAYETGKGSIV 239 Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVR 310 +R+R +EE G IVVTE PY V K+++ E I L KRI + +RDES E VR Sbjct: 240 LRSRTEIEETKTGRERIVVTEFPYMVNKTKVHEHIVRLGQEKRIEGITAVRDESNREGVR 299 Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370 V+ K R ++++ ++F ++ M+T F NM + G VP+++ L IL ++ H++E Sbjct: 300 FVIEVK-RDASANVILNNLFKMTQMQTNFGFNMLAIQNG-VPKILSLRQILDAYIEHQKE 357 Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQ 427 V+ RR+ F + + R IL+GLLIA +IDE+I IIR + + + ++S+F L+E Q Sbjct: 358 VVVRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSKFKLSERQ 417 Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487 AIL++RLR L LE +I+SE D+LLA + +L ++ I E+ EVK F Sbjct: 418 SQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADILAKPERVSQIIKEELDEVKRKFG 477 Query: 488 KSTDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSL--------KSHSV 538 +RRT E+ + +L+ + +IE+ + + +SN+G+I+ L K Sbjct: 478 D-----QRRT---ELMVGEVWSLEDEDLIEESDVLITLSNKGYIKRLDQAEFTAQKRGGR 529 Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLLSG 583 + K+ D ++ + T D +L + G+ Y LP NLL Sbjct: 530 GVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLK- 588 Query: 584 RGHGEAIQLLIDL 596 GE+IQ +I++ Sbjct: 589 LDEGESIQTIINV 601 >gi|63259384|gb|AAY40350.1| DNA gyrase subunit A [Edwardsiella tarda] Length = 878 Score = 408 bits (1049), Expect = e-111, Method: Compositional matrix adjust. Identities = 246/605 (40%), Positives = 355/605 (58%), Gaps = 60/605 (9%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + V++ L+ YL YA+S I RA+PD+RDG KPVHRR++ AM+ +G D+ +KKSA Sbjct: 8 ITPVNIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSA 67 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD++VYD++VR+AQPF RY L+ GQGNFG+IDGDSAAA RYTE RM Sbjct: 68 RVVGDVIGKYHPHGDRAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVRM 127 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 ++A +L +D++ VD+ Y+ + P V P+K PNLL NG++GIAVGMAT+IP HN+ Sbjct: 128 AKIAHELLADLDKETVDYVPNYDGTEQIPDVLPTKVPNLLVNGSAGIAVGMATNIPPHNL 187 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ LA ID+ I+IE L+E+I GPDFPT II R I E+YR GRG VRAR Sbjct: 188 TEVINGCLAYIDDENITIEGLMEHIPGPDFPTAAII-NGRRGIEEAYRTGRGKIYVRARA 246 Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314 +E + G IVV EIPYQV K+RLIEKIAEL+ KR+ + +RDES +D +RIV+ Sbjct: 247 EIEVDDKNGRETIVVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K ++ +L +++ + M+ F +NM L G+ P+++ L L+ ++ HRREV+ R Sbjct: 307 VKRDAVGRGVL-NNLYTQTQMQVSFGINMVALHQGQ-PKLLDLKECLEAFVRHRREVVTR 364 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----------- 420 R+ F ++ R IL+GL IA +NID II +IR P K +VS+ Sbjct: 365 RTIFELRKARERAHILEGLAIALVNIDPIIELIRRAPTPAEAKAALVSQAWALGNVAAML 424 Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457 + LTE Q AIL+LRL+ L LE ++ E LL + Sbjct: 425 ARAGDDAARPEWLEPQYGIRDGHYHLTEQQAQAILDLRLQKLTGLEHEKLLDEYKALLEQ 484 Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ-QAMIE 516 + +L S ++ I E+ ++E F + RRT A+ A + + +IE Sbjct: 485 IAALIFILQSPERLMEVIREELIAIREQFGDA-----RRTEIT----ANTADINIEDLIE 535 Query: 517 KEPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568 +E + V +S++G+++ + + SA KE D + L A+T D IL + Sbjct: 536 QEDVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDLIDRLLVANTHDTILCFFS 595 Query: 569 DGKAY 573 G+ Y Sbjct: 596 RGRMY 600 >gi|255034822|ref|YP_003085443.1| DNA gyrase, A subunit [Dyadobacter fermentans DSM 18053] gi|254947578|gb|ACT92278.1| DNA gyrase, A subunit [Dyadobacter fermentans DSM 18053] Length = 875 Score = 408 bits (1049), Expect = e-111, Method: Compositional matrix adjust. Identities = 248/708 (35%), Positives = 399/708 (56%), Gaps = 47/708 (6%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 EN+ +++ + Y+ Y++S I RA+PD+RDG KPVHRR+++ M ++G+ + A KK Sbjct: 7 ENIIPINIEDEMRGAYIDYSMSVIISRALPDVRDGLKPVHRRVLYGMDDLGVSYNRAHKK 66 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 SARIVGEV+GK HPHGD SVY+++VR+AQP+ RYPL+ GQGNFG++DGD+ AA RYTEA Sbjct: 67 SARIVGEVLGKYHPHGDSSVYNTMVRMAQPWSLRYPLVDGQGNFGSVDGDNPAAMRYTEA 126 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 R+ ++A+ +L +++D VDF+ +++ SEP V P+KFPNLL NG+SGIAVGMAT++ H Sbjct: 127 RLKRIADELLADLNKDTVDFQPNFDDSLSEPSVLPAKFPNLLVNGSSGIAVGMATNMAPH 186 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 N+ E+ + LA IDN EI+I +L+E++ PDFPTGGII + + GRG +R+ Sbjct: 187 NLGEVVDGVLAYIDNNEITIPELMEHVKAPDFPTGGIIY-GYNGVRSAMETGRGSIIMRS 245 Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314 + E G I+VTEIPY + K+ +IE+IA LI K++ + DIRDES + ++F Sbjct: 246 KAQFEVSKTGREQIIVTEIPYMINKAAMIERIASLINDKKLEGISDIRDESDREGMRIVF 305 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 + P++++ +F + ++T F +N L GR P ++ L ++K ++ HR V+ R Sbjct: 306 DLKKDAIPNIVLNHLFKYTPLQTSFGVNNVALVKGR-PVLLNLKDLIKHYVDHRIVVITR 364 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVDAI 431 R+ + ++ ++R IL+GLLIA N+D +IA+IR P K ++ +F L+E Q AI Sbjct: 365 RTEYELREAEKRAHILQGLLIALDNLDAVIALIRAARDPETAKTGLMEQFELSEIQARAI 424 Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491 L++RL+ L LE +I E + ++ + +L + +++ I E+ ++KE + Sbjct: 425 LDMRLQRLTGLEREKIVKEYEEIMILIADLKDILANEYRKYEIIKTELTDIKERY----- 479 Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSAL 543 G R T E S + + + MI E + + IS G+I R+ V + Sbjct: 480 -GDARRTQIEFSAEEFS--DEDMIADEEMLITISKEGYIKRTPLSEYRTQTRGGVGSRGV 536 Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDLNH 598 K+ D + A + +L+ + G K Y +P G+ S G IQ LI L Sbjct: 537 KTKDTDFTEHLFSATMLNYLLIFTEYGKLFWMKVYEVPEGSKTS---KGRPIQNLISLES 593 Query: 599 NQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG---KTFLKVSSEEKMKLVVK 655 DS ++ V + + + + +I T +G KT L+ S + ++ Sbjct: 594 G---------DSIRSVINVKTLSDEDYINNNYLIMCTEQGTIKKTLLEAYSRPRTNGIIA 644 Query: 656 VT---GD---HVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGI 697 ++ GD +VA+ + ++I S KGVR G+ Sbjct: 645 ISINEGDRLLNVALTNGDNDIVIASAAGRAVRFNEKGVRPMGRTAAGV 692 >gi|186894663|ref|YP_001871775.1| DNA gyrase subunit A [Yersinia pseudotuberculosis PB1/+] gi|186697689|gb|ACC88318.1| DNA gyrase, A subunit [Yersinia pseudotuberculosis PB1/+] Length = 891 Score = 408 bits (1048), Expect = e-111, Method: Compositional matrix adjust. Identities = 253/635 (39%), Positives = 371/635 (58%), Gaps = 60/635 (9%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + V++ L+ YL YA+S I RA+PD+RDG KPVHRR++ AM+ +G D+ +KKSA Sbjct: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSA 67 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG++DGDSAAA RYTE RM Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRM 127 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 +++A +L +++D VDF Y+ + P V P++ PNLL NG+SGIAVGMAT+IP HN+ Sbjct: 128 SKIAHELLADLEKDTVDFVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ + LA I++ ISIE L+EYI GPDFPT II R I E+YR GRG +RAR Sbjct: 188 SEVIDGCLAYIEDENISIEGLMEYIPGPDFPTAAII-NGRRGIEEAYRTGRGKVYIRARA 246 Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314 VE + G I+V EIPYQV K+RLIEKIAEL+ KR+ + +RDES +D +RIV+ Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K ++ ++++ +++ L+ ++ F +NM LS G+ P+++ L IL ++ HRREV+ R Sbjct: 307 IKRDAVG-EVVLNNLYSLTQLQVTFGINMVALSQGQ-PKLLNLKDILVAFVRHRREVVTR 364 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-------------------------- 408 R+ F ++ R IL+ L IA NID II +IR Sbjct: 365 RTIFELRKARDRAHILEALAIALANIDPIIELIRRASTPAEAKAGLIASPWELGNVASML 424 Query: 409 ---NEDKPKP--------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457 +D +P + ++ LTE Q AIL+LRL+ L LE ++ E LL Sbjct: 425 ERAGDDAARPEWLEAEFGIRDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLTL 484 Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517 ++ +L + + I E+ +KE ++ DL RRT E++ + +I + Sbjct: 485 IGELIFILENPDRLMEVIREELVAIKEQYN---DL--RRT---EITANTSDINIEDLINQ 536 Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569 E + V +S++G+++ + + SA KE D + L A+T D IL S+ Sbjct: 537 EDVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSR 596 Query: 570 GKAYTLPAGNLL-SGRG-HGEAIQLLIDLNHNQDI 602 G+ Y + L + RG G I L+ L N+ I Sbjct: 597 GRLYWMKVYQLPEASRGARGRPIVNLLPLEPNERI 631 >gi|51595600|ref|YP_069791.1| DNA gyrase subunit A [Yersinia pseudotuberculosis IP 32953] gi|51588882|emb|CAH20496.1| DNA gyrase subunit A [Yersinia pseudotuberculosis IP 32953] Length = 897 Score = 408 bits (1048), Expect = e-111, Method: Compositional matrix adjust. Identities = 253/635 (39%), Positives = 371/635 (58%), Gaps = 60/635 (9%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + V++ L+ YL YA+S I RA+PD+RDG KPVHRR++ AM+ +G D+ +KKSA Sbjct: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSA 67 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG++DGDSAAA RYTE RM Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRM 127 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 +++A +L +++D VDF Y+ + P V P++ PNLL NG+SGIAVGMAT+IP HN+ Sbjct: 128 SKIAHELLADLEKDTVDFVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ + LA I++ ISIE L+EYI GPDFPT II R I E+YR GRG +RAR Sbjct: 188 SEVIDGCLAYIEDENISIEGLMEYIPGPDFPTAAII-NGRRGIEEAYRTGRGKVYIRARA 246 Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314 VE + G I+V EIPYQV K+RLIEKIAEL+ KR+ + +RDES +D +RIV+ Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K ++ ++++ +++ L+ ++ F +NM LS G+ P+++ L IL ++ HRREV+ R Sbjct: 307 IKRDAVG-EVVLNNLYSLTQLQVTFGINMVALSQGQ-PKLLNLKDILVAFVRHRREVVTR 364 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-------------------------- 408 R+ F ++ R IL+ L IA NID II +IR Sbjct: 365 RTIFELRKARDRAHILEALAIALANIDPIIELIRRASTPAEAKAGLIASPWELGNVASML 424 Query: 409 ---NEDKPKP--------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457 +D +P + ++ LTE Q AIL+LRL+ L LE ++ E LL Sbjct: 425 ERAGDDAARPEWLEAEFGIRDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLTL 484 Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517 ++ +L + + I E+ +KE ++ DL RRT E++ + +I + Sbjct: 485 IGELIFILENPDRLMEVIREELVAIKEQYN---DL--RRT---EITANTSDINIEDLINQ 536 Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569 E + V +S++G+++ + + SA KE D + L A+T D IL S+ Sbjct: 537 EDVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSR 596 Query: 570 GKAYTLPAGNLL-SGRG-HGEAIQLLIDLNHNQDI 602 G+ Y + L + RG G I L+ L N+ I Sbjct: 597 GRLYWMKVYQLPEASRGARGRPIVNLLPLEPNERI 631 >gi|153949955|ref|YP_001401731.1| DNA gyrase subunit A [Yersinia pseudotuberculosis IP 31758] gi|152961450|gb|ABS48911.1| DNA gyrase, A subunit [Yersinia pseudotuberculosis IP 31758] Length = 897 Score = 408 bits (1048), Expect = e-111, Method: Compositional matrix adjust. Identities = 253/635 (39%), Positives = 371/635 (58%), Gaps = 60/635 (9%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + V++ L+ YL YA+S I RA+PD+RDG KPVHRR++ AM+ +G D+ +KKSA Sbjct: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSA 67 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG++DGDSAAA RYTE RM Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRM 127 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 +++A +L +++D VDF Y+ + P V P++ PNLL NG+SGIAVGMAT+IP HN+ Sbjct: 128 SKIAHELLADLEKDTVDFVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ + LA I++ ISIE L+EYI GPDFPT II R I E+YR GRG +RAR Sbjct: 188 SEVIDGCLAYIEDENISIEGLMEYIPGPDFPTAAII-NGRRGIEEAYRTGRGKVYIRARA 246 Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314 VE + G I+V EIPYQV K+RLIEKIAEL+ KR+ + +RDES +D +RIV+ Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K ++ ++++ +++ L+ ++ F +NM LS G+ P+++ L IL ++ HRREV+ R Sbjct: 307 IKRDAVG-EVVLNNLYSLTQLQVTFGINMVALSQGQ-PKLLNLKDILVAFVRHRREVVTR 364 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-------------------------- 408 R+ F ++ R IL+ L IA NID II +IR Sbjct: 365 RTIFELRKARDRAHILEALAIALANIDPIIELIRRASTPAEAKAGLIASPWELGNVASML 424 Query: 409 ---NEDKPKP--------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457 +D +P + ++ LTE Q AIL+LRL+ L LE ++ E LL Sbjct: 425 ERAGDDAARPEWLEAEFGIRDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLTL 484 Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517 ++ +L + + I E+ +KE ++ DL RRT E++ + +I + Sbjct: 485 IGELIFILENPDRLMEVIREELVAIKEQYN---DL--RRT---EITANTSDINIEDLINQ 536 Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569 E + V +S++G+++ + + SA KE D + L A+T D IL S+ Sbjct: 537 EDVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSR 596 Query: 570 GKAYTLPAGNLL-SGRG-HGEAIQLLIDLNHNQDI 602 G+ Y + L + RG G I L+ L N+ I Sbjct: 597 GRLYWMKVYQLPEASRGARGRPIVNLLPLEPNERI 631 >gi|238751208|ref|ZP_04612702.1| DNA gyrase subunit A [Yersinia rohdei ATCC 43380] gi|238710482|gb|EEQ02706.1| DNA gyrase subunit A [Yersinia rohdei ATCC 43380] Length = 888 Score = 408 bits (1048), Expect = e-111, Method: Compositional matrix adjust. Identities = 250/635 (39%), Positives = 370/635 (58%), Gaps = 60/635 (9%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + V++ L+ YL YA+S I RA+PD+RDG KPVHRR++ AM+ +G D+ +KKSA Sbjct: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSA 67 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG++DGDSAAA RYTE RM Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRM 127 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 +++A +L +++D VDF Y+ + P V P++ PNLL NG+SGIAVGMAT+IP HN+ Sbjct: 128 SKIAHELLADLEKDTVDFVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ + LA I++ I+IE L+EYI GPDFPT II R I E+YR GRG +RAR Sbjct: 188 SEVIDGCLAYIEDENITIEGLMEYIPGPDFPTAAII-NGRRGIEEAYRTGRGKVYIRARA 246 Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314 VE + G I+V EIPYQV K+RLIEKIAEL+ KR+ + +RDES +D +RIV+ Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K ++ ++++ +++ L+ ++ F +NM LS G+ P+++ L IL ++ HRREV+ R Sbjct: 307 IKRDAVG-EVVLNNLYSLTQLQVTFGINMVALSQGQ-PKLLNLKDILVAFVRHRREVVTR 364 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-------------------------- 408 R+ F ++ R IL+ L IA NID II +IR Sbjct: 365 RTIFELRKARDRAHILEALAIALANIDPIIELIRRAATPAEAKAGLIANPWELGNVASML 424 Query: 409 ---NEDKPKP--------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457 +D +P + ++ LTE Q AIL+LRL+ L LE ++ E LL Sbjct: 425 ERAGDDAARPEWLEAEFGIRDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLTI 484 Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517 ++ +L + ++ I E+ +KE ++ RRT E++ + +I + Sbjct: 485 IGELIFILENPERLMEVIREELMAIKEQYNDP-----RRT---EITANTSDINIEDLINQ 536 Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569 E + V +S++G+++ + + SA KE D + L A+T D IL S+ Sbjct: 537 EDVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSR 596 Query: 570 GKAYTLPAGNLL-SGRG-HGEAIQLLIDLNHNQDI 602 G+ Y + L + RG G I L+ L N+ I Sbjct: 597 GRLYWMKVYQLPEASRGARGRPIVNLLPLEPNERI 631 >gi|312863710|ref|ZP_07723948.1| DNA gyrase, A subunit [Streptococcus vestibularis F0396] gi|311101246|gb|EFQ59451.1| DNA gyrase, A subunit [Streptococcus vestibularis F0396] Length = 822 Score = 408 bits (1048), Expect = e-111, Method: Compositional matrix adjust. Identities = 253/711 (35%), Positives = 405/711 (56%), Gaps = 47/711 (6%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 + N+ V+L ++ ++ YA+S I RA+PD+RDG KPV RRI++ M+E+G+ K Sbjct: 3 DNNLIDVNLTSEMKTSFIDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVTPDKPHK 62 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSARI G+V+GK HPHGD S+Y+++VR+AQ + RY L+ G GNFG++DGD AAA RYTE Sbjct: 63 KSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYTE 122 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 ARM+++A +L+ ++++ VDF+D Y+ + EP+V PS+ PNLL NG +GIAVGMAT+IP Sbjct: 123 ARMSKIALEMLRDLNKNTVDFQDNYDGSEREPIVLPSRIPNLLVNGATGIAVGMATNIPP 182 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E +A ++DNPE++ +L+E + GPDFPTGG+++ R I +Y G+G +R Sbjct: 183 HNLAETIDAVELMMDNPEVTTRELMEVLPGPDFPTGGLVM-GRSGIHRAYETGKGSIVLR 241 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312 +R +E G IVVTE PY V K+++ E I L KRI + +RDES+ E VR + Sbjct: 242 SRTEIETTKSGRERIVVTEFPYMVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGVRFI 301 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 + + R ++++ ++F L+ ++T F NM + G VP+++ L IL +++AH++EV+ Sbjct: 302 IEVR-RDASANVILNNLFKLTQLQTNFSFNMLAIEKG-VPKILSLRQILADYIAHQQEVV 359 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLTENQVD 429 RR+ F + R IL+GLLIA ++DE+I IIRN + + + +++RF LTE Q Sbjct: 360 VRRTQFDKDKAEARAHILEGLLIALDHLDEVITIIRNSQTDAEAQAELMARFELTERQSQ 419 Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489 AIL++RLR L LE +I++E ++LLA + +L ++ I E+ E K F+ Sbjct: 420 AILDMRLRRLTGLERDKIQNEYNDLLALIADLADILAKPERVIAIIKEELDESKRKFA-- 477 Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLS 541 D R EV + + +IE+E + + +S++G+I RS K + Sbjct: 478 -DARRTELMVGEVV----SLEDEDLIEEEDVVITLSSKGYIKRLAQDEFRSQKRGGRGVQ 532 Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLLSGRGH 586 + D ++ + T D + ++ G+ Y LP NLL Sbjct: 533 GTGVNDDDFVRDIVSTSTHDHLYFMTNKGRVYRLKGYEIPEYGRTAKGLPIVNLLK-LDE 591 Query: 587 GEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS 646 GE IQ +I+ ++ L+ V+ +G +E+E + G LK+ Sbjct: 592 GETIQTVINAKSDE-------ASDNNHLVFVTRQGLVKRTKEAEFKNIRQNGLIALKLRE 644 Query: 647 EEKMKLVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSR-GKGVRLQSYKDG 695 +++ V TG+ ++G + F D I MSR GV+ + +DG Sbjct: 645 GDELINVFLTTGNEEIIIGTKFGYSVRFKEDTIRSMSRMAAGVKGVTLRDG 695 >gi|212712305|ref|ZP_03320433.1| hypothetical protein PROVALCAL_03391 [Providencia alcalifaciens DSM 30120] gi|212685051|gb|EEB44579.1| hypothetical protein PROVALCAL_03391 [Providencia alcalifaciens DSM 30120] Length = 867 Score = 408 bits (1048), Expect = e-111, Method: Compositional matrix adjust. Identities = 249/635 (39%), Positives = 373/635 (58%), Gaps = 60/635 (9%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + V++ L+ YL YA+S I RA+PD+RDG KPVHRR++ AM+ +G D+ +KKSA Sbjct: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSA 67 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 RIVG+VIGK HPHGD +VY+++VRLAQPF RY L+ GQGNFG++DGDSAAA RYTE RM Sbjct: 68 RIVGDVIGKYHPHGDSAVYETIVRLAQPFSMRYMLVDGQGNFGSVDGDSAAAMRYTEIRM 127 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 ++A +L ++++ VDF Y+ + P V P+K PNLL NG+SGIAVGMAT+IP HN+ Sbjct: 128 AKIAHEMLADLEKETVDFVPNYDGTEQIPEVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ LA I++ +ISIE L+E+I GPDFPT II R I+++YR GRG +RAR Sbjct: 188 GEVINGCLAYIEDEDISIEGLMEHIPGPDFPTAAII-NGRRGIIDAYRTGRGKVYIRARA 246 Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314 VE + G I+V EIPYQV K+RLIEKIAEL+ KR+ + +RDES +D +RIV+ Sbjct: 247 EVEVDEKNGRETIIVNEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K ++ ++++ +++ L+ ++ F +NM L G+ P+++ L I+ ++ HRREV+ R Sbjct: 307 VKRDAVG-EVVLNNLYSLTQLQVSFGINMVALHQGQ-PKILNLKDIIAAFVRHRREVVTR 364 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----------- 420 R+ F ++ R IL+ L +A NID II +IR P K +++R Sbjct: 365 RTIFELRKARDRAHILEALAVALANIDPIIELIRKAPTPAEAKAGLIARSWALGNVAAML 424 Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457 + LTE Q AIL+LRL+ L LE ++ E LL + Sbjct: 425 ERAGDDAARPEWLEPQYGVHEGQYFLTEQQAQAILDLRLQKLTGLEHEKLLEEYRELLKQ 484 Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517 E++ +L S ++ I E+ +++ ++ RRT E + AD + +I + Sbjct: 485 IEELLFILRSPERLMEVIREELEAIRDAYNDP-----RRTEITE-NTADINI--EDLINQ 536 Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569 E + V +S++G+++ + + SA KE D ++ L A+T D IL S+ Sbjct: 537 EDVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIERLLVANTHDTILCFSSR 596 Query: 570 GKAYTLPAGNLL-SGRG-HGEAIQLLIDLNHNQDI 602 G+ Y + L + RG G I L+ L ++ I Sbjct: 597 GRLYWMKVYQLPEASRGARGRPIVNLLPLEQDERI 631 >gi|1346229|sp|P48369|GYRA_AERSA RecName: Full=DNA gyrase subunit A gi|1019146|gb|AAB41037.1| DNA gyrase [Aeromonas salmonicida] Length = 922 Score = 408 bits (1048), Expect = e-111, Method: Compositional matrix adjust. Identities = 243/606 (40%), Positives = 353/606 (58%), Gaps = 57/606 (9%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + +++ L+ YL YA+S I RA+PD+RDG KPVHRR++ AM+E+G D+ +KKSA Sbjct: 8 ITPINIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELGNDWNKPYKKSA 67 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD +VYD++VRLAQ F RY L+ GQGNFG++DGDSAAA RYTE RM Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRLAQDFSMRYMLVDGQGNFGSVDGDSAAAMRYTEVRM 127 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 +++ +L +D++ VD+ Y+ + P V P+K PNLL NG+SGIAVGMA +IP HN+ Sbjct: 128 ARISHELLADLDKETVDWVPNYDGTEMIPAVMPTKVPNLLVNGSSGIAVGMAWNIPPHNL 187 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 EI LALI+N ++I++L+ YI GPDFPTG II R IV++YR GRG VRA+ Sbjct: 188 TEIVNGCLALIENGNLTIDELMTYITGPDFPTGAII-NGRAGIVQAYRTGRGSVYVRAKA 246 Query: 257 CVEEVGRGS--WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314 VE + S I+V E+PYQV K+RLIEKIAEL+ K++ + +RDES +D ++ Sbjct: 247 EVEVDDKTSRETIIIVHELPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDACRIVI 306 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 R ++++ +++ + ++T F +NM L + P+VM L IL +L HRREV+ R Sbjct: 307 EIKRGESGEIVLNNLYKHTQLQTTFGINMVALDNNQ-PKVMNLKDILDAFLLHRREVVTR 365 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----------- 420 R+ F ++ R IL+GL +A NID II +IR+ D P K +V+R Sbjct: 366 RTVFELRKARDRAHILEGLAVALANIDPIIELIRHSDTPADAKAKLVARGWELGNVAAML 425 Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457 + LTE Q AIL+LRL L LE +I E +LL Sbjct: 426 EKAGDDAARPEWLEPEFGIREGQYFLTEQQAQAILDLRLHKLTGLEHGKILEEYQSLLDL 485 Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517 ++ +L S ++ I E+ V+E + G R E+S + + +I Sbjct: 486 IAELLFILASPERLMEVIRDELLAVREQY------GDERPP--EISASSAEINIEDLITP 537 Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569 E + V +S++G+++ + + SA KE + ++ L A+T D IL ST Sbjct: 538 EDVVVTLSHQGYVKYQPITDYEAQRRGGRGKSATRIKEENFVERLLVANTHDTILCFSTR 597 Query: 570 GKAYTL 575 GK Y L Sbjct: 598 GKVYWL 603 >gi|170726654|ref|YP_001760680.1| DNA gyrase subunit A [Shewanella woodyi ATCC 51908] gi|169812001|gb|ACA86585.1| DNA gyrase, A subunit [Shewanella woodyi ATCC 51908] Length = 905 Score = 408 bits (1048), Expect = e-111, Method: Compositional matrix adjust. Identities = 244/606 (40%), Positives = 354/606 (58%), Gaps = 57/606 (9%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 ++ +++ L+ YL YA+S I RA+PD+RDG KPVHRR++ AMSE+ D+ +KKS Sbjct: 7 SITPINIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELKNDWNKPYKKS 66 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 AR+VG+VIGK HPHGD +VYD++VRLAQPF RY LI GQGNFG++DGD+AAA RYTE R Sbjct: 67 ARVVGDVIGKYHPHGDTAVYDTIVRLAQPFSMRYTLIDGQGNFGSVDGDAAAAMRYTEIR 126 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 M +VA +L ++++ VD+ Y+ + P V P++ P LL NG+SGIAVGMAT+IP HN Sbjct: 127 MDKVAHQLLADLEKETVDYVPNYDGTEFIPAVLPTRIPTLLVNGSSGIAVGMATNIPPHN 186 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 + E+ LALI+NP+++I +L+EYI GPDFPT GII R+ I+++Y GRG +RA+ Sbjct: 187 LNEVVSGCLALIENPDLTINELMEYIPGPDFPTAGII-NGRKGIIDAYHTGRGRAVMRAK 245 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314 VE G I+V EIPYQV K+RLIEKIAEL+ K+I + +RDES +D +RIV+ Sbjct: 246 AEVEIEDNGRERIIVHEIPYQVNKARLIEKIAELVKDKKIEGISGLRDESDKDGMRIVVE 305 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K R ++++ +++ + M++ F +NM L+ G+ P++ L +L+ ++ HRREV+ R Sbjct: 306 IK-RGEVGEVVLNNLYAQTQMQSSFGINMVALTNGQ-PKLFNLKEMLECFILHRREVVTR 363 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV---------------- 418 R+ F ++ R IL+ L IA NID IIA+I+ P V Sbjct: 364 RTVFELRKARERAHILESLAIALANIDPIIALIKASPTPAEAKVKLVAEGWELGNVQSML 423 Query: 419 ---------------------SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457 R+ LTE Q AIL+LRL L LE +I E + LL Sbjct: 424 EKAGDDAARPEWLEPEYGIRDGRYYLTEQQAQAILDLRLHKLTGLEHEKILKEYEELLEI 483 Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517 + +L S + I E++EV E F G R T + D + + +I + Sbjct: 484 IAALLYILRSSVRLMEVITEELQEVLENF------GDERRTVINANEVDMSL--EDLINE 535 Query: 518 EPITVVISNRGWIR--SLKSHSVDL------SALHFKEGDSLKIALHAHTTDRILLLSTD 569 E + V +S+ G+ + +L + +A K+ D ++ L A+T D IL S Sbjct: 536 EDVVVTLSHLGYAKYQALTDYQAQRRGGKGKAATKVKDEDFVEKLLVANTHDTILCFSDF 595 Query: 570 GKAYTL 575 GK Y L Sbjct: 596 GKMYWL 601 >gi|118587498|ref|ZP_01544923.1| DNA gyrase, A subunit [Oenococcus oeni ATCC BAA-1163] gi|71466854|emb|CAH41001.1| DNA gyrase subunit A [Oenococcus oeni] gi|118432148|gb|EAV38889.1| DNA gyrase, A subunit [Oenococcus oeni ATCC BAA-1163] Length = 866 Score = 408 bits (1048), Expect = e-111, Method: Compositional matrix adjust. Identities = 229/630 (36%), Positives = 379/630 (60%), Gaps = 36/630 (5%) Query: 8 NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67 N+N + +K L + +L+YA+S I RA+PD+RDG KPVHRRI+ M+E+G+ Sbjct: 6 NNNFTPDSRIKDTDLNKTMRTSFLSYAMSVIVARALPDVRDGLKPVHRRILFGMNELGVT 65 Query: 68 FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAA 127 KKSARIVG+V+GK HPHGD ++Y+SLVR+AQPF RYPL+ G GNFG++DGD AA Sbjct: 66 PDKPHKKSARIVGDVMGKFHPHGDSAIYESLVRMAQPFSYRYPLVDGHGNFGSVDGDPAA 125 Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187 A RYTEAR++++A +L+ +++ VDF+ +Y+ ++ EPVV PS+FPNLL NG GIAVGM Sbjct: 126 AMRYTEARLSKIALEMLRDINKGTVDFQPSYDGDNREPVVLPSRFPNLLVNGAQGIAVGM 185 Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247 AT+IP+HN++E+ A L+ NP+ ++ L+E + GPDFPTG I++ + I +Y GR Sbjct: 186 ATNIPTHNLREVIAAIHVLMANPDATVADLMEALPGPDFPTGAIVM-GKSGIRRAYETGR 244 Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307 G VR++ +E G I V+E+PY V K++LIE+I EL++ K++ + IRDES + Sbjct: 245 GSVTVRSKVDIETSSSGHERISVSELPYMVNKAKLIERIRELVLEKKLEGITAIRDESDQ 304 Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367 + + R + ++++ +++ + ++T F NM ++ G+ P+ M L IL +L H Sbjct: 305 NGLRIAIDVGRDANANVVLNNLYKQTLLQTSFSFNMIAINHGK-PETMSLKQILVAYLEH 363 Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLT 424 +RE++ RR+ F ++ R IL+GL IA +ID II +IR+ + K +++R+ L+ Sbjct: 364 QREIIRRRTEFDLKKAQDRAHILEGLRIALDHIDAIIELIRSSNTAEIAKNELINRYQLS 423 Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484 + Q AIL++RL L LE +I++E +LL E +L + ++ +QI + E+ + Sbjct: 424 DKQAQAILDMRLVRLTGLERGKIEAEYTDLLKSIEDFKDIL-AKPERIDQIIYQ--ELLD 480 Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKS---HSVD-- 539 I +K D R +VS + + +I++E + + ++++G+I+ L + H+ + Sbjct: 481 IANKFGDERRTELQVGDVS----SIEDEDLIDEEEVLISLTHKGYIKRLSTSEFHTQNRG 536 Query: 540 ---LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL---------------PAGNLL 581 + ++ + D ++ + T D +L S GK Y + P NLL Sbjct: 537 GRGVQGMNTHDDDFVEQLVSTSTHDTLLFFSDQGKVYKMKGYEVPEYGRQAKGIPVINLL 596 Query: 582 SGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611 G GE +Q +I++ + F++ +T Sbjct: 597 -GLDAGERVQAVINVRGDAATSKDFLFFTT 625 >gi|148549153|ref|YP_001269255.1| DNA gyrase subunit A [Pseudomonas putida F1] gi|148513211|gb|ABQ80071.1| DNA gyrase subunit A [Pseudomonas putida F1] Length = 919 Score = 408 bits (1048), Expect = e-111, Method: Compositional matrix adjust. Identities = 235/601 (39%), Positives = 361/601 (60%), Gaps = 57/601 (9%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 V++ L + YL YA+S I RA+PD RDG KPVHRR+++AMSE+G D+ +KKSAR+V Sbjct: 11 VNIEDELRQSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMSELGNDWNKPYKKSARVV 70 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG++DGD+AAA RYTE RMT++ Sbjct: 71 GDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRYTEVRMTKL 130 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A +L + ++ VD+ Y+ + P V P++ PNLL NG+SGIAVGMAT+IP HN+ E+ Sbjct: 131 AHELLADLHKETVDWVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHNLGEV 190 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 + LALIDNPE++I++L+++I GPDFPT GII R+ I+E+YR GRG +RAR +E Sbjct: 191 IDGCLALIDNPEVTIDELMQFIPGPDFPTAGII-NGRQGIIEAYRTGRGRIYMRARSEIE 249 Query: 260 EVGR--GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317 ++ + G IV+TE+PYQ+ K+RLIEKIAEL+ K+I + ++RDES +D ++ Sbjct: 250 DIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKIEGITELRDESDKDGMRIVIELR 309 Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377 R P++++ +++ + +++ F +N+ L GR P+++ L +L+ ++ HRREV+ RR+ Sbjct: 310 RGEVPEVVLNNLYQQTQLQSVFGINVVALVDGR-PRLLNLKDLLEAFVRHRREVVTRRTV 368 Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK----------------PVMVSR- 420 F ++ R IL+G +A NID +IA+I+ P VMV R Sbjct: 369 FELRKARERGHILEGQAVALSNIDPVIALIKASPTPSEAKEALVSTPWESSAVQVMVERA 428 Query: 421 --------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEK 460 + L+ Q AIL+LRL L LE ++ +E +L + + Sbjct: 429 GADACRPEDLPEQYGLHDGKYFLSPEQAQAILDLRLHRLTGLEHEKLLAEYQEILEQIGE 488 Query: 461 IDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI 520 + +L+S ++ I E+ ++ + RRT E+ A MI +E Sbjct: 489 LIRILSSAERLMEVIREELEAIRAEYGDV-----RRT---EILNASHDLNYGDMIPEEER 540 Query: 521 TVVISNRGWIRS--LKSHSVDL------SALHFKEGDSLKIALHAHTTDRILLLSTDGKA 572 V IS+ G+ ++ L ++ SA K+ D ++ L A++ +LL S+ GK Sbjct: 541 VVTISHGGYAKTQPLSAYQAQRRGGKGKSATGVKDEDYIEHLLVANSHATLLLFSSKGKV 600 Query: 573 Y 573 Y Sbjct: 601 Y 601 >gi|86138320|ref|ZP_01056894.1| DNA gyrase subunit A [Roseobacter sp. MED193] gi|85824845|gb|EAQ45046.1| DNA gyrase subunit A [Roseobacter sp. MED193] Length = 915 Score = 408 bits (1048), Expect = e-111, Method: Compositional matrix adjust. Identities = 236/611 (38%), Positives = 363/611 (59%), Gaps = 51/611 (8%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 VS+ ++ YL YA+S I RAIPDLRDG KPVHRRI++AM E G +++KSAR V Sbjct: 26 VSIEAEMKTSYLDYAMSVIVSRAIPDLRDGLKPVHRRILYAMHETGNSHDKSYRKSARPV 85 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+V+GK HPHGD ++YD+LVR+AQ F PL+ GQGNFG++DGD+AAA RYTE RM + Sbjct: 86 GDVMGKYHPHGDSAIYDALVRMAQDFSMSLPLLDGQGNFGSMDGDNAAAMRYTEVRMDKP 145 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A +L ++++ VDF+D Y+ +D EP V P++FPN+L NG GIAVGMAT+IP HN+ E+ Sbjct: 146 AAFMLNDIEKETVDFQDNYDGKDREPTVLPARFPNMLVNGAGGIAVGMATNIPPHNLGEV 205 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 +A LALI++P+++ E+L++Y+ GPDFPTG I++ R ++Y GRG +R++ VE Sbjct: 206 IDATLALIEDPDLTSEQLIDYVPGPDFPTGAIML-GRSGARKAYLEGRGSVIIRSKTRVE 264 Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKNR 318 E+ + + IVV E+PYQV K+ +IEKIAE + K+I + ++DES + VR+V+ K R Sbjct: 265 EIRKDRYAIVVDEVPYQVNKAAMIEKIAEQVREKKIEGVAHVQDESDRNGVRVVVELK-R 323 Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378 P++++ +F + M+T F NM L+ GR P+ + L L ++ R +V+ RR+++ Sbjct: 324 DATPEVVLNQLFRFTPMQTYFGCNMLALNGGR-PEQLTLRRFLTSFIDFREDVVARRTAY 382 Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE----DKPKPVMVSR-------------- 420 ++ R IL GL +A NIDEI+A IR + + +M R Sbjct: 383 LLRKARERSHILCGLAVAVTNIDEIVATIRQSADAAEAREKLMTRRWPAQPILQYIALID 442 Query: 421 -----------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGK 469 ++L+E Q AIL LRL+ L ++ ++ EL+ L + ++ +L+S + Sbjct: 443 DPTHTANEDGTYNLSETQARAILELRLQRLTQIGVKEVTDELEELAGKIKEYLEILSSRE 502 Query: 470 QQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW 529 + I E+REV++ F+ RRT + S + +IE+E + V +++ G+ Sbjct: 503 RIMGIICDELREVRDQFAVP-----RRTEIVDWS---GDMDDEDLIEREDMVVTVTSGGY 554 Query: 530 I--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL- 580 I R+ K +S + KE D + A+T ++L +TDG Y L L Sbjct: 555 IKRTPLVDFRAQKRGGKGISGMQTKEEDVVTNLFVANTHTQLLFFTTDGMVYKLKTWRLP 614 Query: 581 -LSGRGHGEAI 590 S G G+AI Sbjct: 615 QSSRTGKGKAI 625 >gi|222053122|ref|YP_002535484.1| DNA gyrase, A subunit [Geobacter sp. FRC-32] gi|221562411|gb|ACM18383.1| DNA gyrase, A subunit [Geobacter sp. FRC-32] Length = 856 Score = 408 bits (1048), Expect = e-111, Method: Compositional matrix adjust. Identities = 243/636 (38%), Positives = 365/636 (57%), Gaps = 59/636 (9%) Query: 12 LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71 L + N AV++ ++ Y+ YA+S I RA+PD+RDG KPVHRR ++AM +MG D+ Sbjct: 2 LTQTNKVAVNIEDEMKRSYMDYAMSVIIGRALPDVRDGLKPVHRRCLYAMYDMGNDYNKP 61 Query: 72 FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131 +KKSAR+VG+VIGK HPHGD +VYD+LVR+AQ F RYPL+ GQGNFG++DGDS AA RY Sbjct: 62 YKKSARVVGDVIGKYHPHGDTAVYDTLVRMAQDFSLRYPLVDGQGNFGSVDGDSPAAMRY 121 Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191 TE RM Q+A +L +D++ V+ Y++ EP+V P+KFPNLL NG+SGIAVGMAT+I Sbjct: 122 TEIRMYQLAHELLADIDKETVEMGPNYDDSLKEPLVLPAKFPNLLVNGSSGIAVGMATNI 181 Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251 P HN+ E+ + +A+I NPE++ E+L+ I GPDFPT G I RE I+ +Y GRG + Sbjct: 182 PPHNLAEVIDGIVAVIHNPELTFEELIALIPGPDFPTAGFIY-GREGILSAYSTGRGIIQ 240 Query: 252 VRARWCVEEVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310 +RAR VE + IVVTEIPYQV K+RL+EKIAEL+ K+I + D+RDES + Sbjct: 241 MRARAIVETHKKTERQSIVVTEIPYQVNKARLVEKIAELVREKKIEGISDLRDESDREGM 300 Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370 V+ + +P +++ ++ + M++ F + M + R P+V+ L + ++ HRRE Sbjct: 301 RVVVELKKDENPQIVLNHLYKQTQMQSSFGIIMLAIVNNR-PKVLTLRETINHFIDHRRE 359 Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP----------------- 413 ++ RR+ F ++ + R IL+GL IA +D +I +IR P Sbjct: 360 IVTRRTIFDLKKAEARAHILEGLKIALDWLDAVIELIRGSKNPAEAKEGLMSGIFSDEEW 419 Query: 414 ----------------KPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457 KPVM L+E Q AIL +RL L +E +I E +L Sbjct: 420 LKKLGLSLPANHAEYAKPVM-----LSELQAQAILEMRLHRLTGMERDKIIDEYHEILRY 474 Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517 ++ +L S + I E+ E+KE F +RRT + + + +L+ ++E Sbjct: 475 IARLKEILASETEILKIIVGELLELKEKFGD-----KRRTEI--IDQTAEISLEDTIVE- 526 Query: 518 EPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569 E + V IS+ G+I R+ + + + KE D ++ A + D ++ + Sbjct: 527 EDMVVTISHTGYIKRNAVTMYRAQRRGGKGKTGMKTKEEDFVEQLFIASSKDYLMFFTDA 586 Query: 570 GKAYTLPAGNLL-SGRG-HGEAIQLLIDLNHNQDIV 603 GK Y L + +GR G+AI L++L+ N+ I Sbjct: 587 GKVYWLKVYEIPEAGRATRGKAIVNLLNLSANEKIT 622 >gi|307256314|ref|ZP_07538097.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306865140|gb|EFM97040.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 10 str. D13039] Length = 896 Score = 408 bits (1048), Expect = e-111, Method: Compositional matrix adjust. Identities = 239/606 (39%), Positives = 351/606 (57%), Gaps = 55/606 (9%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 +++ VS+ L+ YL YA+S I RA+PD+RDG KPVHRR++ +M + F K Sbjct: 6 KDITPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTFNRPHVK 65 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 SAR+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG+IDGD+ AA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRYTEV 125 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 RM ++ + +L +D++ VD+ Y+ ++ P V P+K P LL NG+SGIAVGMAT+IP H Sbjct: 126 RMQKITQELLTDLDKETVDYSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATNIPPH 185 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 N+ E+ + LA I+N +I IE+L+ +I GPDFPTG II R+ I E+YR GRG VRA Sbjct: 186 NLNEVLDGCLAYIENEQIGIEELMRFIPGPDFPTGAII-NGRKGIEEAYRTGRGKVYVRA 244 Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314 + VE +G IVVTE+PYQV K++LIEKIAEL+ K+I + I+D S + ++ Sbjct: 245 KASVETTEKGREQIVVTELPYQVNKAKLIEKIAELVKDKKIEGISGIQDHSDKKGISIVI 304 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 R ++++ ++ L+ M+ F +NM L G+ P+V+ L I++ ++ HRREV+ R Sbjct: 305 EVKRDAVGEVVLNHLYSLTQMQVTFGINMVALDHGQ-PKVLNLKQIIEAFVKHRREVVTR 363 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN------------------------- 409 R+ F ++ R IL+GL IA NID +I +IRN Sbjct: 364 RTIFELRKARERAHILEGLAIALANIDPVIELIRNSKTADEAREGLLARAWALGNVAPML 423 Query: 410 ----------EDKPKPVMV--SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457 ED P+ + V ++ L+E Q AIL LRL L LE +I E LL E Sbjct: 424 EAAGVDASRPEDLPENLGVRDGQYYLSEAQARAILELRLHRLTGLEHEKIVDEYKALLTE 483 Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517 ++ +L+S ++ I E+ +VK F RRT E++ A + +I + Sbjct: 484 IGELLRILSSAERLMEVIREELEKVKAEFGDE-----RRT---EITAASGDINMEDLIAQ 535 Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569 E + V +S+ G+++ + + SA KE D ++ L A+T D IL S+ Sbjct: 536 EDVVVTLSHAGYVKYQPLSDYEAQRRGGKGKSATKMKEDDFIEKLLVANTHDTILCFSSR 595 Query: 570 GKAYTL 575 G+ Y L Sbjct: 596 GRLYQL 601 >gi|28564562|dbj|BAC57595.1| DNA gyraseA [Campylobacter jejuni] Length = 844 Score = 408 bits (1048), Expect = e-111, Method: Compositional matrix adjust. Identities = 237/607 (39%), Positives = 377/607 (62%), Gaps = 32/607 (5%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 + +++ V + +++ YL Y++S I RA+PD RDG KPVHRRI++AM F Sbjct: 8 DSDIELVDIENSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFV 67 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSARIVG VIG+ HPHGD +VYD+LVR+AQ F RYP I+GQGNFG+IDGDSAAA RYTE Sbjct: 68 KSARIVGAVIGRYHPHGDTAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTE 127 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 A+M++++ +L+ +D+D VDF Y+ +SE V PS+ PNLL NG+SGIAVGMAT+IP Sbjct: 128 AKMSKLSHELLKDIDKDTVDFVPNYDGSESESDVLPSRVPNLLLNGSSGIAVGMATNIPP 187 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 H++ E+ + L L+DN + S+E+++++I GPDFPTGGII ++ I+E+YR GRG +VR Sbjct: 188 HSLNELIDGLLYLLDNKDASLEEIMQFIKGPDFPTGGIIY-GKKGIIEAYRTGRGRVKVR 246 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIV 312 A+ +E+ IV+ E+PYQ K+RLIE+IAEL+ K+I + ++RDES E +R+V Sbjct: 247 AKTHIEK-KTNKDVIVIDELPYQTNKARLIEQIAELVKEKQIEGISEVRDESNKEGIRVV 305 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 + K ++ ++++ ++F + ME+ F + M + + P++ L +L +L HR+ V+ Sbjct: 306 IELKREAM-SEIVLNNLFKSTTMESTFGVIMLAIH-NKEPKIFSLLELLNLFLTHRKTVI 363 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLTENQVD 429 RR+ F +Q R IL+GL IA NIDE+IA+I+N + + +V++F L+E Q + Sbjct: 364 IRRAIFELQKARARAHILEGLKIALDNIDEVIALIKNSSDNNTARDSLVAKFGLSELQAN 423 Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489 AIL+++L L LE +I++EL L+ E +++ +L S N I E++E++ F Sbjct: 424 AILDMKLGRLTGLEREKIENELAELMKEIARLEEILKSETLLENLIRDELKEIRSKF--- 480 Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS-------- 541 D+ R ++ + +I E + V I++RG+I+ + S + Sbjct: 481 -DVPR----ITQIEDDYDDIDIEDLIPNENMVVTITHRGYIKRVPSKQYEKQKRGGKGKL 535 Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDL 596 A+ + D ++ A+T D ++ ++ G K Y +P G S G+A+ LI+L Sbjct: 536 AVTTYDDDFIESFFTANTHDTLMFVTDRGQLYWLKVYKIPEG---SRTAKGKAVVNLINL 592 Query: 597 NHNQDIV 603 ++I+ Sbjct: 593 QAEEEIM 599 >gi|330808287|ref|YP_004352749.1| DNA topoisomerase (ATP-hydrolyzing) (DNA gyrase subunit A) [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327376395|gb|AEA67745.1| DNA topoisomerase (ATP-hydrolyzing) (DNA gyrase subunit A) [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 887 Score = 408 bits (1048), Expect = e-111, Method: Compositional matrix adjust. Identities = 238/603 (39%), Positives = 361/603 (59%), Gaps = 57/603 (9%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 V++ L++ YL YA+S I RA+PD RDG KPVHRR++ AMSE+G DF +KKSAR+V Sbjct: 11 VNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDFNKPYKKSARVV 70 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG++DGD+AAA RYTE RMT++ Sbjct: 71 GDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRYTEVRMTKL 130 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A +L + ++ VD+ Y+ + P V P++ PNLL NG+SGIAVGMAT+IP HN+ E+ Sbjct: 131 AHELLADLHKETVDWVPNYDGTEMIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHNLGEV 190 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 + LALIDNPE+++++L++YI GPDFPT II R I+E+YR GRG +RAR VE Sbjct: 191 IDGCLALIDNPELTVDELMQYIPGPDFPTAAII-NGRAGIIEAYRTGRGRIYMRARSTVE 249 Query: 260 EVGR--GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317 ++ + G IV+TE+PYQ+ K+RLIEKIAEL+ K++ + ++RDES +D V+ Sbjct: 250 DIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKLEGITELRDESDKDGMRVVIELR 309 Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377 R P++++ +++ + +++ F +N+ L GR P+++ L +L+ ++ HRREV+ RR+ Sbjct: 310 RGEVPEVILNNLYAQTQLQSVFGINIVALIDGR-PRILNLKDLLEAFVRHRREVVTRRTV 368 Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVS--------------- 419 F ++ R IL+G +A NID +IA+I+ P K ++S Sbjct: 369 FELRKARERGHILEGQAVALSNIDPVIALIKASPTPSEAKEALISTPWESSAVVAMVERA 428 Query: 420 -------------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEK 460 ++ L+ Q AIL LRL L LE ++ +E +L + + Sbjct: 429 GADSCRPENLDPQYGLREGKYFLSPEQAQAILELRLHRLTGLEHEKLLAEYQEILNQIGE 488 Query: 461 IDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI 520 + +LNS + I E+ ++ + RRT + +R D TL MI +E Sbjct: 489 LIRILNSATRLMEVIREELEVIRAEYGDV-----RRTEILD-ARLD-LTLGD-MIPEEER 540 Query: 521 TVVISNRGWIRS--LKSHSVDL------SALHFKEGDSLKIALHAHTTDRILLLSTDGKA 572 V IS+ G+ ++ L ++ SA K+ D + L A++ +LL S+ GK Sbjct: 541 VVTISHGGYAKTQPLAAYQAQRRGGKGKSATGVKDEDYIAHLLVANSHTTLLLFSSKGKV 600 Query: 573 YTL 575 Y L Sbjct: 601 YWL 603 >gi|26988498|ref|NP_743923.1| DNA gyrase subunit A [Pseudomonas putida KT2440] gi|24983263|gb|AAN67387.1|AE016365_2 DNA gyrase, subunit A [Pseudomonas putida KT2440] Length = 923 Score = 408 bits (1048), Expect = e-111, Method: Compositional matrix adjust. Identities = 235/601 (39%), Positives = 361/601 (60%), Gaps = 57/601 (9%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 V++ L + YL YA+S I RA+PD RDG KPVHRR+++AMSE+G D+ +KKSAR+V Sbjct: 11 VNIEDELRQSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMSELGNDWNKPYKKSARVV 70 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG++DGD+AAA RYTE RMT++ Sbjct: 71 GDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRYTEVRMTKL 130 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A +L + ++ VD+ Y+ + P V P++ PNLL NG+SGIAVGMAT+IP HN+ E+ Sbjct: 131 AHELLADLHKETVDWVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHNLGEV 190 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 + LALIDNPE++I++L+++I GPDFPT GII R+ I+E+YR GRG +RAR +E Sbjct: 191 IDGCLALIDNPEVTIDELMQHIPGPDFPTAGII-NGRQGIIEAYRTGRGRIYMRARSEIE 249 Query: 260 EVGR--GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317 ++ + G IV+TE+PYQ+ K+RLIEKIAEL+ K+I + ++RDES +D ++ Sbjct: 250 DIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKIEGITELRDESDKDGMRIVIELR 309 Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377 R P++++ +++ + +++ F +N+ L GR P+++ L +L+ ++ HRREV+ RR+ Sbjct: 310 RGEVPEVVLNNLYQQTQLQSVFGINVVALVDGR-PRLLNLKDLLEAFVRHRREVVTRRTV 368 Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK----------------PVMVSR- 420 F ++ R IL+G +A NID +IA+I+ P VMV R Sbjct: 369 FELRKARERGHILEGQAVALSNIDPVIALIKASPTPSEAKEALVSTPWESSAVQVMVERA 428 Query: 421 --------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEK 460 + L+ Q AIL+LRL L LE ++ +E +L + + Sbjct: 429 GADSCRPEDLPEQYGLHDGKYFLSPEQAQAILDLRLHRLTGLEHEKLLAEYQEILEQIGE 488 Query: 461 IDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI 520 + +L+S ++ I E+ ++ + RRT E+ A MI +E Sbjct: 489 LIRILSSAERLMEVIREELEAIRAEYGDV-----RRT---EILNASHDLNYGDMIPEEER 540 Query: 521 TVVISNRGWIRS--LKSHSVDL------SALHFKEGDSLKIALHAHTTDRILLLSTDGKA 572 V IS+ G+ ++ L ++ SA K+ D ++ L A++ +LL S+ GK Sbjct: 541 VVTISHGGYAKTQPLSAYQAQRRGGKGKSATGVKDEDYIEHLLVANSHATLLLFSSKGKV 600 Query: 573 Y 573 Y Sbjct: 601 Y 601 >gi|325523551|gb|EGD01857.1| DNA topoisomerase IV subunit A [Burkholderia sp. TJI49] Length = 672 Score = 408 bits (1048), Expect = e-111, Method: Compositional matrix adjust. Identities = 237/618 (38%), Positives = 356/618 (57%), Gaps = 36/618 (5%) Query: 102 AQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEE 161 AQ F RYPLI GQGNFG+ DGD AAA RYTEAR+T +++L+L +D+ VDF Y+ Sbjct: 1 AQDFSLRYPLIDGQGNFGSRDGDGAAAMRYTEARLTPISKLLLDEIDQGTVDFMPNYDGS 60 Query: 162 DSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYI 221 EP PS+ P +L NG SGIAVG+AT IPSHN++E+ AA+ALI NP++S +L+ I Sbjct: 61 FEEPKTLPSRMPFVLLNGASGIAVGLATEIPSHNLREVAAAAVALIRNPKLSHAELMNLI 120 Query: 222 IGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSR 281 GPDFP GG I+ S I +Y GRG +VRARW +E++ RG W +VVTE+P + Sbjct: 121 PGPDFPGGGQIISSDAEIAAAYETGRGSLKVRARWKIEDLARGQWQLVVTELPPNTSGQK 180 Query: 282 LIEKIAELIIAK------------------RIPLLEDIRDESAED--VRIVLFPKNRSLD 321 ++E+I EL K + LL+ +RDES ++ VR+V PK+R++D Sbjct: 181 VLEEIEELTNPKLKLGKKTLTPEQLNTKKAMLDLLDAVRDESGKEAAVRLVFEPKSRTID 240 Query: 322 PDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQ 381 + S+ + +E+ LN+ ++ P L IL EW+ R++ + RR R+ Sbjct: 241 QTEFVNSLLAHTSLESNATLNLVMIGADGRPGQKGLLTILDEWVKFRQQTMTRRCRHRLG 300 Query: 382 AIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRK 441 D R+ IL+G +I +LNIDE+I IIR D+PK ++S F LTE Q D IL +RLR L + Sbjct: 301 KGDDRIHILEGRMIVFLNIDEVIRIIRESDEPKAALMSAFGLTERQADDILEIRLRQLAR 360 Query: 442 LEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCE 501 LE+ +I+ EL+ L EK K++ LL N A + +KEI + + G R T + Sbjct: 361 LEKIKIEKELEALRDEKAKLEDLLA------NDNAMKRLMIKEIEADAKQYGDDRRTLIQ 414 Query: 502 VSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTD 561 + +AT +A + EP+TVV+S +GW+R+LK H +D ++ FK GDSL A T D Sbjct: 415 QEK--RATF-EAKVVDEPVTVVVSQKGWVRALKGHGLDPASFSFKAGDSLYAAFQCRTPD 471 Query: 562 RILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKG 621 R++ + G+ Y++ L GRG G + LI+L ++ + + LL+ SS G Sbjct: 472 RLIAWGSSGRVYSVDVSVLPGGRGDGVPVTSLIELESGSHLMHYYAAAADQPLLLASSNG 531 Query: 622 NAFIVEESEIIANTRKGKTFLKVSSE----EKMKLVVKVTGDHVAVVGENRKLLIFSIDQ 677 FI + ++++ + GK F+ + + M ++ T VA + +LL+F ID+ Sbjct: 532 FGFIAKVGDMVSRVKAGKAFMTIDAGAVPLAPMPVLPNAT--QVACLSSGGRLLVFGIDE 589 Query: 678 IPEMS-RGKGVRLQSYKD 694 + +S G+GV L + D Sbjct: 590 MKTLSGGGRGVTLMALDD 607 >gi|225181141|ref|ZP_03734587.1| DNA gyrase, A subunit [Dethiobacter alkaliphilus AHT 1] gi|225168110|gb|EEG76915.1| DNA gyrase, A subunit [Dethiobacter alkaliphilus AHT 1] Length = 815 Score = 408 bits (1048), Expect = e-111, Method: Compositional matrix adjust. Identities = 217/555 (39%), Positives = 344/555 (61%), Gaps = 21/555 (3%) Query: 30 YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89 +L YA+S I RA+PD+RDG KPVHRRI++AM E+G+ KKSAR+VGEV+GK HPH Sbjct: 21 FLDYAMSVIVSRALPDVRDGLKPVHRRILYAMYELGMWPDKPHKKSARLVGEVLGKYHPH 80 Query: 90 GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDE 149 GD +VYD++VRLAQ F RYPL+ G GNFG++DGD AAA RYTEARM+++A +L + + Sbjct: 81 GDTAVYDAMVRLAQNFSSRYPLVDGHGNFGSVDGDRAAAMRYTEARMSKIATEMLSEIHK 140 Query: 150 DAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDN 209 + +DFR +++ EP V P++FPNLL NG++GIAVGMAT+IP HN++E+ +A + +IDN Sbjct: 141 ETIDFRPNFDDTLEEPEVLPARFPNLLLNGSAGIAVGMATNIPPHNLREVVDALVHMIDN 200 Query: 210 PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIV 269 PE +++++I GPDFPTGG+I+ RE I +YR GRG ++RA+ +E + G IV Sbjct: 201 PECEDTEIMQHITGPDFPTGGLIL-GREGIRSAYRTGRGIIKIRAKTQIERMENGKSRIV 259 Query: 270 VTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESI 329 VTE+PYQV K++ IEKIA+L+ K++ + D+RDES ++ R + +L+ + Sbjct: 260 VTELPYQVNKAKTIEKIADLVREKKLEGITDLRDESDRTGMRIVIELKRETNAQVLLNQM 319 Query: 330 FMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEI 389 F + ++ F + M L + PQV+ L +L +L H+++V+ RR+ F ++ + R I Sbjct: 320 FKFTQLQQTFGIIMLALVNNK-PQVLNLREMLGHYLEHQKDVITRRTRFDLRKAEERAHI 378 Query: 390 LKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQ 446 L+GL IA N+D +I +IR N ++ + ++ F LT+ Q AIL++RL+ L LE + Sbjct: 379 LEGLRIALKNLDAVIKLIRASKNTEEARTGLMENFGLTQIQAQAILDMRLQKLTGLERQK 438 Query: 447 IKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRAD 506 ++ E L+ + + +L + + + I E+ E+++ + G R T + D Sbjct: 439 LEDEYLELIQKISYLKEILANERLVYQIIKDEMGEIRKKY------GDDRRTAIVIDEDD 492 Query: 507 KATLQQAMIEKEPITVVISNRGWIRSL--------KSHSVDLSALHFKEGDSLKIALHAH 558 A + +I +E + V +++ G+I+ L K ++ + K D ++ A Sbjct: 493 FAV--EDLIAEEDMVVTLTHNGYIKRLPVTTYRVQKRGGRGITGMSTKGDDFVEHVFVAS 550 Query: 559 TTDRILLLSTDGKAY 573 T D + + GK Y Sbjct: 551 THDYLCCFTNRGKMY 565 >gi|118602340|ref|YP_903555.1| DNA gyrase subunit A [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] gi|118567279|gb|ABL02084.1| DNA gyrase subunit A [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] Length = 861 Score = 408 bits (1048), Expect = e-111, Method: Compositional matrix adjust. Identities = 253/662 (38%), Positives = 385/662 (58%), Gaps = 61/662 (9%) Query: 11 TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70 T + N+ V++ + YL YA+S I RA+PD+RDG KPVHRR+++AM +G D+ Sbjct: 9 THFKPNLPVVTIEDEMRNSYLEYAMSVIVGRALPDVRDGLKPVHRRVLYAMEVLGNDYNK 68 Query: 71 AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130 ++KKSARIVG+VIGK HPHGD +VYD++VR+AQPF R LI GQGNFG++DGDSAAA R Sbjct: 69 SYKKSARIVGDVIGKYHPHGDTAVYDTIVRMAQPFSMRNILIDGQGNFGSVDGDSAAAMR 128 Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190 YTE RM +++ +L+ ++++ VDF D Y+ +SEP+V P++ PNLLANG+SGIAVGMAT+ Sbjct: 129 YTEIRMAKLSHELLRDLEKNTVDFIDNYDGSESEPLVLPTRVPNLLANGSSGIAVGMATN 188 Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250 IP HN+ E+ EA L IDN +I+I++LLE + GPDFPT GII I ++Y G+G Sbjct: 189 IPPHNLGEVIEACLKTIDNEDITIDELLEIMPGPDFPTAGII-NGASGIRQAYETGKGKI 247 Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310 +R+ +E G IVVTE+PYQV K++LI KIA+L+ KRI + +RDES +D Sbjct: 248 YLRSVPHIEGEGEDKQSIVVTELPYQVNKAKLIGKIAKLVKDKRIDGITGLRDESDKDGM 307 Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370 ++ R P++++ +++ L++M+T F +NM + G +P++M L IL+ ++AHRR+ Sbjct: 308 RMVIELRRGEVPEVMLNNLYKLTEMQTVFGINMVAIDKG-MPKLMTLKNILEAFIAHRRD 366 Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSR------- 420 V+ RRS F + +L+GL +A NID+II +I+ N K V+V++ Sbjct: 367 VVTRRSIFDLNKARNHAHLLEGLAVALHNIDDIIELIKSASNSIDAKEVLVAKTWQGSVI 426 Query: 421 ----------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELD 452 + L++ QV AIL+L+L L LE+ +I E + Sbjct: 427 KELIGDRDMVMFKPEDLPTELGLQMDGDYQLSQKQVQAILDLKLHRLTGLEKNKIFDEFN 486 Query: 453 NLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ 512 LL E+I LL+ Q ++ IRE E+ ++ R T + D TL+ Sbjct: 487 ELL---ERIKYLLDI-LQTPERLMQVIRE--ELIDIQSNYANARMTQILEHKID-LTLED 539 Query: 513 AMIEKEPITVVISNRGWIR--SLKSHSVDLS------ALHFKEGDSLKIALHAHTTDRIL 564 +I +E V +S+ G+++ SL + A K+ D + A++ D +L Sbjct: 540 -LITQERRVVTLSHGGYVKAQSLSDYQAQRRGGKGKVATKVKDEDFVDQLFIANSHDTVL 598 Query: 565 LLSTDGKAYTLPAGNL-LSGR-GHGEAIQLLIDLNHNQ---DIVTAFVYDSTCKLLVVSS 619 S+ GK Y L L ++ R G+ I L+ L + I+T +D + +V+S Sbjct: 599 CFSSLGKVYWLKVYELPMASRIARGKPIVNLLPLEKEEIINAILTVSKFDENHFVFMVTS 658 Query: 620 KG 621 G Sbjct: 659 SG 660 >gi|157961888|ref|YP_001501922.1| DNA gyrase subunit A [Shewanella pealeana ATCC 700345] gi|157846888|gb|ABV87387.1| DNA gyrase, A subunit [Shewanella pealeana ATCC 700345] Length = 903 Score = 408 bits (1048), Expect = e-111, Method: Compositional matrix adjust. Identities = 243/606 (40%), Positives = 354/606 (58%), Gaps = 58/606 (9%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 ++ +++ L+ YL YA+S I RA+PD+RDG KPVHRR++ AMSE+ D+ +KKS Sbjct: 7 SITPINIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELKNDWNKPYKKS 66 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 AR+VG+VIGK HPHGD +VYD++VRLAQPF RYPLI GQGNFG++DGD+AAA RYTE R Sbjct: 67 ARVVGDVIGKYHPHGDTAVYDTIVRLAQPFSMRYPLIDGQGNFGSVDGDAAAAMRYTEIR 126 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 M +VA +L ++++ VDF Y+ + P V P++ P LL NG+SGIAVGMAT+IP HN Sbjct: 127 MDKVAHQLLADLEKETVDFVPNYDGTEFIPAVLPTRIPTLLVNGSSGIAVGMATNIPPHN 186 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 + E+ LALI++P +SIE+L+EYI GPDFPT II R+ I+++Y+ GRG +RAR Sbjct: 187 LNEVISGCLALIEDPALSIEQLMEYIPGPDFPTAAII-NGRKGIIDAYKTGRGRAVMRAR 245 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314 +EE G I+V EIPYQV K+RLIEKIAEL+ K+I + +RDES +D +RIV+ Sbjct: 246 AEIEE-ENGRERIIVHEIPYQVNKARLIEKIAELVKDKKIEGISGLRDESDKDGMRIVIE 304 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K R ++++ +++ + M+ F +NM L+ G+ P++ L +L+ ++ HRREV+ R Sbjct: 305 IK-RGEVGEVVLNNLYAQTQMQCSFGINMVALTNGQ-PKLFNLKEMLECFILHRREVVTR 362 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV---------------- 418 R+ F ++ R IL+ L +A NID IIA+I+ P V Sbjct: 363 RTVFELRKARERAHILEALAVALANIDPIIALIKASPTPAEAKVKLVAEGWELGHVKGML 422 Query: 419 ---------------------SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457 ++ LTE Q AIL LRL L LE +I +E + LL Sbjct: 423 EKAGDDAARPEWLEPEFGIRDDKYYLTEQQAQAILELRLHRLTGLEHDKIIAEYEELLEI 482 Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517 + +L S ++ I E+ EV T+ G R T + D + + +I + Sbjct: 483 IAALLFILGSPERLMEVIKEELEEV------LTNFGDERRTVINANEVDMSL--EDLINE 534 Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569 E + V +S+ G+ + + + +A K+ D ++ L A+T D IL S Sbjct: 535 EDVVVTLSHLGYAKYQVLSDYQAQRRGGKGKAATKVKDEDFVEKLLVANTHDTILCFSDF 594 Query: 570 GKAYTL 575 GK Y L Sbjct: 595 GKMYWL 600 >gi|238898606|ref|YP_002924287.1| DNA gyrase (type II topoisomerase), subunit A [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229466365|gb|ACQ68139.1| DNA gyrase (type II topoisomerase), subunit A [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 844 Score = 408 bits (1048), Expect = e-111, Method: Compositional matrix adjust. Identities = 247/635 (38%), Positives = 364/635 (57%), Gaps = 60/635 (9%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 +++ L + YL YA+S I RA+PD+RDGFKPVHRR+++AM +G D+ A+KKSAR+V Sbjct: 11 INIEQELTDSYLEYAMSVIIGRALPDVRDGFKPVHRRVLYAMKVLGNDWNKAYKKSARVV 70 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG++DGDS AA RYTE RM+++ Sbjct: 71 GDVIGKYHPHGDTAVYDAIVRMAQPFSLRYMLVDGQGNFGSVDGDSPAAMRYTEIRMSKI 130 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A IL +D+D V+F Y+E + P V P+K PNLL NG+SGIAVGMAT+IP HN+ E+ Sbjct: 131 AHEILADLDKDTVNFVPNYDETEQIPEVMPTKIPNLLINGSSGIAVGMATNIPPHNISEV 190 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 A LA ID+ IS+E L++++ GPDFPT GII S+ I ++Y GRG +RA+ +E Sbjct: 191 IAACLAYIDDENISVEHLMKHMPGPDFPTAGIIYGSK-GIEQAYGTGRGRIYIRAKANIE 249 Query: 260 -EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318 + G I+V EIPYQV K++LIEKIAEL+ KR+ + +RDES ++ +L R Sbjct: 250 VDEKSGRQSIIVDEIPYQVNKTKLIEKIAELVKEKRLEGISCLRDESDKEGMRILIELKR 309 Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378 ++++ ++ L+ ++ F +NM L G+ P+VM L IL+ ++ HRREV+ RR+ F Sbjct: 310 DAIAEVILNQLYSLTQLQVSFGINMVALDHGQ-PKVMTLKDILRAFIRHRREVVTRRTLF 368 Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---------------------- 416 ++ R IL+ L +A NID II +IRN P Sbjct: 369 ELRKARDRAHILEALAVALANIDVIIQLIRNAGNPTQAKTGLLAQAWPLGHVTSMLDCVG 428 Query: 417 ----------MVSRFSL-------TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKE 459 + +RF + TE Q AIL+LRL+ L LE + +E LL Sbjct: 429 DEKDIARPEWLEARFGIHNGEYHFTEQQAQAILDLRLQKLTGLEHDNLLNEYKELLNAIH 488 Query: 460 KIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEP 519 ++ +L+ + I E +K + R T +++ AD + +I +E Sbjct: 489 ELQKILSDPDRLLEVIREEFLSIKAQYHDP------RRTEIKINTADIHL--EDLIPQED 540 Query: 520 ITVVISNRGWIR--SLKSHSVDL------SALHFKEGDSLKIALHAHTTDRILLLSTDGK 571 + V +S++G+I+ L + SA K+ D ++ L A+T D IL S+ G+ Sbjct: 541 VVVTLSHQGYIKYQPLSDYEAQHRGGKGKSAARTKDEDFIERLLVANTHDNILCFSSRGR 600 Query: 572 AYTLPAGNLL-SGRG-HGEAIQLLIDLNHNQDIVT 604 Y L L + RG G I L+ LN ++ I Sbjct: 601 LYWLKVYQLPEASRGSRGRPIVNLLPLNPDERITA 635 >gi|251792152|ref|YP_003006872.1| DNA gyrase subunit A [Aggregatibacter aphrophilus NJ8700] gi|247533539|gb|ACS96785.1| DNA gyrase, A subunit [Aggregatibacter aphrophilus NJ8700] Length = 885 Score = 407 bits (1047), Expect = e-111, Method: Compositional matrix adjust. Identities = 249/660 (37%), Positives = 384/660 (58%), Gaps = 67/660 (10%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 +++ VS+ L+ YL YA+S I RA+PD+RDG KPVHRR++ AM E G + ++K Sbjct: 6 QDITPVSIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEGGNAYNKPYRK 65 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 SARIVG+VIGK HPHGD +VYD+LVR+AQPF RY L+ GQGNFG++DGD+ AA RYTEA Sbjct: 66 SARIVGDVIGKYHPHGDSAVYDTLVRMAQPFSLRYMLVDGQGNFGSVDGDAPAAMRYTEA 125 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 RMT++A +L +D++ V+F Y+ + P V P+K P LL NG+SGIAVGMAT+IP H Sbjct: 126 RMTKIAHELLADLDKETVNFVPNYDGSEQIPEVLPTKVPALLVNGSSGIAVGMATNIPPH 185 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 N+ E+ + LA I+N +I+I++L+ +I GPDFPT +I R+ I E+Y+ GRG VRA Sbjct: 186 NLGEVLDGCLAYIENNDITIDELMSHIPGPDFPTAALI-NGRKGIEEAYKTGRGKIYVRA 244 Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVL 313 + +E +G I+V EIPYQV K++LIEKIAE + K+I + +RDES +D +RIV+ Sbjct: 245 KAEIETDEKGRETIIVNEIPYQVNKAKLIEKIAEFVKEKKIEGISGLRDESDKDGMRIVI 304 Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373 K ++ ++++ +++ L+ M+ F +N+ L G+ P+++ L +++ ++ HRREV+ Sbjct: 305 EIKRDAVG-EVVLNNLYALTQMQVTFGINIVALDHGQ-PKLLNLKQLIEAFVLHRREVVT 362 Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSR---------- 420 RR+ F ++ R IL+GL IA N+D II +IR P+ +++R Sbjct: 363 RRTIFELRKARERTHILEGLAIALANVDPIIELIRQAPNPETAKRELIARPWQLGHVADM 422 Query: 421 ------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLA 456 + LTE Q AIL+LRL+ L L +I E LL Sbjct: 423 LAAAGVDAARPEDLDEQYGIRDGLYYLTEVQAQAILDLRLQKLTNLGHDEILDEYKKLLE 482 Query: 457 EKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE 516 ++ +L S ++ I E+ +++E F+ RRT E++ A + +I Sbjct: 483 AIGELLHILRSPERLMEVIREELEQIREQFNDP-----RRT---EITAASGDINLEDLIA 534 Query: 517 KEPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568 +E + V +S+ G+++ + + SA KE D ++ L A+T D IL S+ Sbjct: 535 QEDVVVTLSHEGYVKYQPITDYEAQRRGGKGKSATKMKEEDFIEKLLVANTHDTILCFSS 594 Query: 569 DGKAYTLPAGNL-LSGRG-HGEAIQLLIDLNHNQDI-----VTAFVYDSTCKLLVVSSKG 621 G+ Y L L + RG G I ++ L N+ I VTA+ D K +++++ G Sbjct: 595 RGRLYWLKVYQLPQASRGSRGRPIVNILPLGENERITAILPVTAYEED---KFVIMATAG 651 >gi|190149558|ref|YP_001968083.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|307262878|ref|ZP_07544502.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|189914689|gb|ACE60941.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|306871783|gb|EFN03503.1| DNA gyrase subunit A [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 896 Score = 407 bits (1047), Expect = e-111, Method: Compositional matrix adjust. Identities = 238/606 (39%), Positives = 352/606 (58%), Gaps = 55/606 (9%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 +++ VS+ L+ YL YA+S I RA+PD+RDG KPVHRR++ +M + F K Sbjct: 6 KDITPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTFNRPHVK 65 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 SAR+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG+IDGD+ AA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRYTEV 125 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 RM ++ + +L ++++ VD+ Y+ ++ P V P+K P LL NG+SGIAVGMAT+IP H Sbjct: 126 RMQKITQELLTDLEKETVDYSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATNIPPH 185 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 N+ E+ + LA I+N +ISIE+L+ +I GPDFPTG II R+ I E+YR GRG VRA Sbjct: 186 NLNEVLDGCLAYIENEQISIEELMRFIPGPDFPTGAII-NGRKGIEEAYRTGRGKVYVRA 244 Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314 + VE +G I+VTE+PYQV K++LIEKIAEL+ K+I + I+D S + ++ Sbjct: 245 KASVETTEKGREQIIVTELPYQVNKAKLIEKIAELVKDKKIEGISGIQDHSDKKGISIVI 304 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 R ++++ ++ L+ M+ F +NM L G+ P+V+ L I++ ++ HRREV+ R Sbjct: 305 EVKRDAVGEVVLNHLYSLTQMQVTFGINMVALDHGQ-PKVLNLKQIIEAFVKHRREVVTR 363 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN------------------------- 409 R+ F ++ R IL+GL IA NID +I +IRN Sbjct: 364 RTIFELRKARERAHILEGLAIALANIDPVIELIRNSKTADEAREGLLARAWALGNVAPML 423 Query: 410 ----------EDKPKPVMV--SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457 ED P+ + V ++ L+E Q AIL LRL L LE +I E LL E Sbjct: 424 EAAGVDASRPEDLPENLGVRDGQYYLSEAQARAILELRLHRLTGLEHEKIVDEYKALLTE 483 Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517 ++ +L+S ++ I E+ +VK F RRT E++ A + +I + Sbjct: 484 IGELLRILSSAERLMEVIREELEKVKAEFGDE-----RRT---EITAASGDINMEDLIAQ 535 Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569 E + V +S+ G+++ + + SA KE D ++ L A+T D IL S+ Sbjct: 536 EDVVVTLSHAGYVKYQPLSDYEAQRRGGKGKSATKMKEDDFIEKLLVANTHDTILCFSSR 595 Query: 570 GKAYTL 575 G+ Y L Sbjct: 596 GRLYQL 601 >gi|110633753|ref|YP_673961.1| DNA gyrase subunit A [Mesorhizobium sp. BNC1] gi|110284737|gb|ABG62796.1| DNA gyrase subunit A [Chelativorans sp. BNC1] Length = 929 Score = 407 bits (1047), Expect = e-111, Method: Compositional matrix adjust. Identities = 247/684 (36%), Positives = 382/684 (55%), Gaps = 67/684 (9%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 ++++ +S+ ++ YL YA+S I RA+PD+RDG KPVHRRI++A E G + + K Sbjct: 13 DDIEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYASYESGYHWNRKYVK 72 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 SAR V +V+GK HPHGD S+YD+LVR+AQ + R PLI GQGNFG+IDGD AA RYTEA Sbjct: 73 SARPVADVMGKYHPHGDASIYDALVRMAQDWSMRVPLIDGQGNFGSIDGDPPAAMRYTEA 132 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 R+T+VA +L+ +D+D VDF+DTY+ SEP + P++FPNLL NG+ GIAVGMAT+IP H Sbjct: 133 RLTKVAHELLEDIDKDTVDFQDTYDGTGSEPRILPARFPNLLVNGSGGIAVGMATNIPPH 192 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 N+ E+ +ALIDNP + + +LLE I GPDFPTGGII+ R I +Y GRG +R Sbjct: 193 NLSEVVNGCVALIDNPALQLPQLLEIIPGPDFPTGGIIL-GRSGIHSAYATGRGSVVMRG 251 Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314 + +E++ I++TE+PYQV K+++IEK+AEL+ KRI + DIRDES V+ Sbjct: 252 KTSIEQIRNEREAIIITEVPYQVNKAQMIEKMAELVREKRIEGISDIRDESDRQGYRVVI 311 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 R + ++++ ++ + ++T F NM L+ G+ P+VM L +L+ ++A R EV+ R Sbjct: 312 ELKRDANAEVILNQLYRFTPLQTSFGANMVALNGGK-PEVMNLLDMLRAFVAFREEVVTR 370 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP----VMVSR---------- 420 R+ + ++ + R +L GL IA NIDE+I +IR P+ +M R Sbjct: 371 RTKYLLRKVRERAHVLVGLAIAVANIDEVIQLIRRAPDPQTAREQLMERRWPAQDVESLI 430 Query: 421 ---------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLL 465 ++L+E Q AIL+LRL+ L L +I EL+ + AE + +L Sbjct: 431 LLIADPRHKINDDGTYNLSEEQARAILDLRLQRLTALGRDEIADELNKIGAEIQDYLDIL 490 Query: 466 NSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVIS 525 +S + + E+ V++ F RRT E++ + +I +E + V ++ Sbjct: 491 SSRARVQGIVKDELIAVRDEFGTP-----RRT---EITEGGADMEDEDLIPREDMVVTVT 542 Query: 526 NRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KA 572 ++G+I R+ S + K+ D + A+T IL S+ G K Sbjct: 543 HKGYIKRVPLSIYRAQARGGKGRSGMSTKDEDFVTRLFVANTHTPILFFSSRGIVYKEKV 602 Query: 573 YTLPAGNLLS-GRG--------HGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNA 623 + LP G S G+ GE I ++ L +++ A ++ +++G Sbjct: 603 WRLPVGTPQSVGKFLRNMLPLVEGERITSIMPLPEDEESWAAL------DVMFATTRGTV 656 Query: 624 FIVEESEIIANTRKGKTFLKVSSE 647 + S+ R GK +K+ E Sbjct: 657 RRNKLSDFTQVNRNGKIAMKLDEE 680 >gi|116623071|ref|YP_825227.1| DNA gyrase subunit A [Candidatus Solibacter usitatus Ellin6076] gi|116226233|gb|ABJ84942.1| DNA gyrase subunit A [Candidatus Solibacter usitatus Ellin6076] Length = 824 Score = 407 bits (1047), Expect = e-111, Method: Compositional matrix adjust. Identities = 260/767 (33%), Positives = 434/767 (56%), Gaps = 53/767 (6%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 N+ V++ +++ YL YA+S I RA+PD+RDG KPVHRRI++ M EMGL KS Sbjct: 10 NMIPVNIEDEMKQSYLDYAMSVIVGRALPDIRDGLKPVHRRILYGMHEMGLAPNRPTTKS 69 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 A+I G+V+GK HPHGD ++YDSLVR+AQPF RYPL+ GQGNFG++DGD AA RYTEAR Sbjct: 70 AKITGQVMGKYHPHGDSAIYDSLVRMAQPFAMRYPLVDGQGNFGSVDGDPPAAMRYTEAR 129 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 +++ A +L+ +D++ VDF+ Y++ +SEP V P++ PNLL NG+SGIAVGMAT+IP HN Sbjct: 130 LSKFATALLEDIDKETVDFKPNYDDTESEPEVLPTRVPNLLVNGSSGIAVGMATNIPPHN 189 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 + EI A + LI +P ++ K++E++ GPDFPTGG I+ R+ I++++ GRG ++RA+ Sbjct: 190 LTEIINATIHLIQHPTANLAKIMEFVQGPDFPTGGFIL-GRQGILDAFIRGRGQLKLRAK 248 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315 +E++G+ I+VTEIPYQV KSRLIE + L+ K++ + DIRDES D ++F Sbjct: 249 AAIEKMGKDREQIIVTEIPYQVNKSRLIEAASALVNEKKLEGIGDIRDESDRDGMRIVFE 308 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 R ++++ +++ + ++ F + M + G+ P+ + L ++K ++ HR EV+ RR Sbjct: 309 LKRGEQAEVILNNLYKHTQLQVGFGIIMLSIVNGQ-PRELGLVDMIKHFIDHRIEVVRRR 367 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVDAIL 432 + + ++ R IL G A ++DE+I +IR PK +++ F ++ Q AI+ Sbjct: 368 TEYELRKARDREHILLGFQKALDHLDEVIRLIRASKSPKDARDSLITTFQFSDKQAQAII 427 Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492 L+L+ L +E +I EL + + +L S K + I E++EV++ + Sbjct: 428 ELQLQRLTGMERQKILDELGEIQRRIAEYVEILGSDKVLRDLIIKELKEVQKNYGDE--- 484 Query: 493 GRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG--- 548 RRT E D ++ + ++ E + + ++ G+ LK SVD + G Sbjct: 485 --RRTQIIE----DTGEIRLEDLVAVEDVAITVTRGGY---LKRTSVDTYRRQTRGGKGR 535 Query: 549 --------DSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLID 595 D ++ + A T +L+ +T G KAY +P + G G+ + LI+ Sbjct: 536 IGMGTRAEDFVERLIVASTHSYLLIFTTRGRVYWLKAYEIPDATTI---GKGKHLTNLIN 592 Query: 596 LNHNQDIVTAFV----YDSTCKLLVVSSKGNAFIVEESEIIA-NTRKGKTFLKVSSEEKM 650 L +++ AF+ + + +++V+ G ++++SE+ + + + VS +E Sbjct: 593 LQGDEE-AKAFLSVKDFVANQYIVMVTKHG---VIKKSELTEFDNPLSRGIIAVSLDEGD 648 Query: 651 KLV-VKVT-GDHVAVVGENRKLLI-FSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKIC 706 +L+ K+T GD+ +G + I F + + M R +GVR S DG ++ ++ Sbjct: 649 ELIGAKITMGDNYIFLGSHEGQAIRFREEDVRAMGRQARGVRAMSLADGDY--LVGMEVV 706 Query: 707 EGLTWIDSAGRSYNRSENDLLGW-LGKRGGVGSLVPKGFPRSGKFLS 752 E I S + L + L RGG G + K ++G+ + Sbjct: 707 EKDGLILSIAENGYGKRTPLEDYRLTSRGGKGVINMKTTNKTGRVVG 753 >gi|58584662|ref|YP_198235.1| DNA gyrase subunit A [Wolbachia endosymbiont strain TRS of Brugia malayi] gi|58418978|gb|AAW70993.1| DNA gyrase, topoisomerase II A subunit, GyrA [Wolbachia endosymbiont strain TRS of Brugia malayi] Length = 900 Score = 407 bits (1047), Expect = e-111, Method: Compositional matrix adjust. Identities = 232/600 (38%), Positives = 355/600 (59%), Gaps = 47/600 (7%) Query: 13 VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72 +++N+ +S+ LE+ YL+YA+S I RAIPD+RDGFKPVHRRI++AMS+ G D G + Sbjct: 1 MQDNIVPISIVKELEDSYLSYAMSVIISRAIPDVRDGFKPVHRRILYAMSKAGYDAGKPY 60 Query: 73 KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132 KK+ARIVG+V+GK HPHGD ++YDSLVR+AQ F PLI GQGNFG++DGD A+ RYT Sbjct: 61 KKAARIVGDVMGKYHPHGDAAIYDSLVRMAQDFSLLLPLIDGQGNFGSVDGDPPASMRYT 120 Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192 EAR+ V+ +L +DE+ VDFR Y+ +SEPVV P++FPNLL NG SG+AVGMAT+IP Sbjct: 121 EARLQGVSHFLLNDIDENTVDFRPNYDGNESEPVVLPAEFPNLLVNGASGVAVGMATNIP 180 Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252 HN+ EI +A + IDN E+++++LL+ + GPDFPTGG I+ R I ++ GRG + Sbjct: 181 PHNLGEIIDACVLYIDNHEVTLDELLKVVPGPDFPTGGTIL-GRSGIRSAFATGRGSIVI 239 Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312 + + +E++ + IV+ EIPYQV K +LIEKI EL+ ++I + +IRDES + V Sbjct: 240 QGKTHIEDLPQDRQAIVIDEIPYQVNKVKLIEKIGELVKEEKINGITEIRDESDKSGIRV 299 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 + ++ D ++ I L+ + + F +N VL+ R P +M L I+ ++ R+EVL Sbjct: 300 VIDLRKNAAADFILNQILGLTPLRSSFSVNTLVLNNNR-PVLMSLKEIIVAFVDFRKEVL 358 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---------------- 416 RR+ FR++ + I GL IA L+IDE+I I+R P+ Sbjct: 359 IRRTEFRLRKTREKAHIYIGLYIAVLSIDEVIKIVRGTKDPEEANKKLLNKEWKTSAEIN 418 Query: 417 ----MVSR---------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDS 463 ++S + LTE Q AIL+++L+ L LE ++++EL++++ ++ + Sbjct: 419 TIIGLISDSMSFLKDGVYRLTELQTKAILDIKLQRLTGLERDKLEAELNSMVNLVKEYIA 478 Query: 464 LLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVV 523 L S ++ +I ++EV+ F+ R T E S AD + +I +E + V Sbjct: 479 FLGSEEKLMKEIKNNLQEVRNRFAVP------RKTVIEESDADIEV--EDLIPQEDMVVT 530 Query: 524 ISNRGWIRSLK-SH-------SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575 ++ G+I+ +K SH KE D + +T +L S G+ Y L Sbjct: 531 VTMNGYIKRVKLSHYRTQRRGGKGKLGQGLKEEDVITKLFVGNTHTSLLFFSNIGRVYRL 590 >gi|256826466|ref|YP_003150425.1| DNA gyrase subunit A [Cryptobacterium curtum DSM 15641] gi|256582609|gb|ACU93743.1| DNA gyrase subunit A [Cryptobacterium curtum DSM 15641] Length = 870 Score = 407 bits (1047), Expect = e-111, Method: Compositional matrix adjust. Identities = 250/682 (36%), Positives = 383/682 (56%), Gaps = 29/682 (4%) Query: 26 LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85 + + ++ Y++S I RA+PD+RDG KPVHRRI++AM+E G+ KSAR VG+VIGK Sbjct: 53 MRQSFIEYSMSVIVARALPDVRDGLKPVHRRILYAMNESGILPNRPHAKSARTVGDVIGK 112 Query: 86 LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145 HPHGD +VYD++VR+AQPF PL+ G GNFG+IDGDSAAA RYTEAR+ + A +L+ Sbjct: 113 YHPHGDTAVYDTMVRMAQPFSMSVPLVDGHGNFGSIDGDSAAAMRYTEARLARPAMELLR 172 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 +D++ VD++ Y+E EP V P++FPNLL NG+ GIAVGMAT+IP HN+ E+ +A Sbjct: 173 DLDKETVDWQPNYDESLKEPNVLPARFPNLLVNGSQGIAVGMATNIPPHNLAEVIDATCL 232 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265 +IDNP++S+++LL+ + GPDFPTG I+ RE I E+Y GRG +RA+ + + RG Sbjct: 233 VIDNPDVSLDELLKVMPGPDFPTGATIM-GREGIREAYETGRGSMTLRAKCEISQTKRGR 291 Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFPKNRSLDPDL 324 I V EIPY V +++L+EKI ELI K++P + ++ D + + I++ K ++ P + Sbjct: 292 SIITVKEIPYMVNRTKLLEKIGELIRDKKLPEISNVHDGADRHGIDIIIELKQNAI-PQV 350 Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384 ++ ++ + M+T F NM L + VP + L IL ++AH+ +V+ RR+ + +Q + Sbjct: 351 VLNKLYKHTQMQTTFGANMLAL-VDDVPHTLSLKQILSYYIAHQIDVITRRTRYDLQKAE 409 Query: 385 RRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVDAILNLRLRSLRK 441 R I++GLLIA NIDE+I IIR+ K ++ F+L E Q +AIL +RLR L Sbjct: 410 ERAHIVRGLLIALDNIDEVIHIIRSSKTDKEARDRLIENFNLDEIQANAILEMRLRRLTG 469 Query: 442 LEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCE 501 LE ++ EL +L +L I E+ E+K+ FS +RRT Sbjct: 470 LEYDKLVEELRDLEERIAYYKRVLEDENLVKQIIKEEMGEIKKKFS-----SKRRTQIQR 524 Query: 502 VSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSVDLSALHFKEGDSLKI 553 S D + +I E + V ++ G+++ L K + ++ KE D ++ Sbjct: 525 ASAKDIDV--EDLIADEDMVVTVTKTGYVKRLPLTTYRQQKRGGKGMQGVNLKEDDFVEH 582 Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDIVTAFVYDST 611 A T +L S+ GK Y L L H G AI L+ L + I Sbjct: 583 LFVASTHAYMLFFSSKGKVYRLKVYELPEAGRHARGTAIVNLLSLEKGESIAAVIATKDF 642 Query: 612 CK---LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT-GDHVAVVGEN 667 K L+ +S G S R G + ++ +++ V +V+ G+ V +V Sbjct: 643 PKEEYLMFATSAGMVKKTSMSLYDRTRRDGLIAINLNDGDELISVKRVSDGEKVFMVSSA 702 Query: 668 RKLLIFSIDQIPEMSRG-KGVR 688 K +++ + M R KGVR Sbjct: 703 GKAIVWDESEARAMGRDTKGVR 724 >gi|28376980|ref|NP_783872.1| DNA gyrase, A subunit [Lactobacillus plantarum WCFS1] gi|300769111|ref|ZP_07079000.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308179197|ref|YP_003923325.1| DNA gyrase, A subunit [Lactobacillus plantarum subsp. plantarum ST-III] gi|28269811|emb|CAD62708.1| DNA gyrase, A subunit [Lactobacillus plantarum WCFS1] gi|300493351|gb|EFK28530.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308044688|gb|ADN97231.1| DNA gyrase, A subunit [Lactobacillus plantarum subsp. plantarum ST-III] Length = 853 Score = 407 bits (1047), Expect = e-111, Method: Compositional matrix adjust. Identities = 241/632 (38%), Positives = 371/632 (58%), Gaps = 38/632 (6%) Query: 12 LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71 L + V+L + +L+YA+S I RA+PD+RDG KPVHRRI++ MSE+G+ Sbjct: 6 LSNNRISDVNLSKTMRTSFLSYAMSVIVARALPDVRDGLKPVHRRILYGMSELGVTPDKP 65 Query: 72 FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131 +KKSARIVG+V+GK HPHGD ++Y+S+VR+AQ F RY L+ G GNFG++DGD AAA RY Sbjct: 66 YKKSARIVGDVMGKYHPHGDSAIYESMVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAMRY 125 Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191 TEARM+++A +L+ +++D VD++ Y++ + EP V P++FPNLL NG +GIAVGM T+I Sbjct: 126 TEARMSKIAVEMLRDINKDTVDWQPNYDDTEREPAVLPARFPNLLVNGATGIAVGMTTNI 185 Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251 P HN+ E+ A L+DNP+ ++ L+E + GPDFPTGGI++ + I ++Y+ GRG Sbjct: 186 PPHNLAEVISAIHLLMDNPDATVADLMEVLPGPDFPTGGIVM-GKSGIRKAYQTGRGNII 244 Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVR 310 VRA+ +++ G I+VTE+PY V K++LIE+IA L K I + DI DES E +R Sbjct: 245 VRAKVDIQDQKNGKQRIIVTELPYMVNKAKLIERIAGLARDKEIEGITDINDESDREGMR 304 Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370 IV+ + R +++ +++ ++ M+T F NM + G P+V+ L IL +L H+ + Sbjct: 305 IVIDVR-RDASASVILNNLYKMTLMQTNFGFNMLAIVKG-APKVLSLKQILIYYLEHQED 362 Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQ 427 V+ RR+ F ++ R IL+GL IA +IDEIIAIIR K ++ + L++ Q Sbjct: 363 VIRRRTEFDLKKAQARAHILEGLRIALDHIDEIIAIIRQSQTSEIAKNQLMDNYGLSDKQ 422 Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487 AIL++RL L LE +I+SE +LL +L S K + NQI E E+ EI Sbjct: 423 AQAILDMRLVRLTGLEREKIESEYQDLLKAIADYKEILAS-KDRINQIIYE--ELMEIQR 479 Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD-------- 539 K D R EV + + +IE+E + V +++ G+I+ L + Sbjct: 480 KFGDKRRTELMVGEVL----SIEDEDLIEEEEVAVTLTHNGYIKRLPTTEFKSQHRGGRG 535 Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL---------------PAGNLLSGR 584 + + + D ++ L T D +L + GK Y + P NLL G Sbjct: 536 IQGMDVHDDDFIEHLLTTSTHDVLLFFTNAGKVYRMKAYEIPEYGRTAKGIPVINLL-GV 594 Query: 585 GHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLV 616 GE IQ ++++ + +++ +T K +V Sbjct: 595 NSGEKIQAVVNVTGDASASDNYLFFTTVKGVV 626 >gi|253989038|ref|YP_003040394.1| DNA gyrase subunit A [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253780488|emb|CAQ83650.1| dna gyrase subunit a [Photorhabdus asymbiotica] Length = 879 Score = 407 bits (1047), Expect = e-111, Method: Compositional matrix adjust. Identities = 248/621 (39%), Positives = 365/621 (58%), Gaps = 64/621 (10%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + V++ L+ YL YA+S I RA+PD+RDG KPVHRR+++AMS +G D+ +KKSA Sbjct: 11 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSVLGNDWNKPYKKSA 70 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG++DGDSAAA RYTE RM Sbjct: 71 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEVRM 130 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 ++A +L ++++ VDF Y+ + P V P+K PNLL NG+SGIAVGMAT+IP HN+ Sbjct: 131 AKIAHELLADLEKETVDFVPNYDGTEQIPEVMPAKVPNLLINGSSGIAVGMATNIPPHNL 190 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ + LA ID+ ISIE L+++I GPDFPT II R I E+YR GRG +RAR Sbjct: 191 SEVIDGCLAYIDDENISIEGLMQFIPGPDFPTAAII-NGRRGIQEAYRTGRGKIYIRARA 249 Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314 +E + G I+V EIPYQV K+RLIEKIAEL+ KRI + +RDES +D +RIV+ Sbjct: 250 EIEVDEKNGRETILVHEIPYQVNKARLIEKIAELVKEKRIEGISALRDESDKDGMRIVIE 309 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K ++ ++++ +++ L+ ++ F +NM L G+ P+++ L I+ ++ HRREV+ R Sbjct: 310 VKRDAVG-EVVLNNLYSLTQLQVSFGINMVALHQGQ-PKLLNLKDIISAFVCHRREVVTR 367 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVS------------ 419 R+ F ++ R IL+ L +A NID II +IR+ P K +V+ Sbjct: 368 RTIFELRKARERAHILEALAVALANIDPIIELIRHAPTPAEAKAALVAQPWELGNVASML 427 Query: 420 ----------------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457 ++ LTE Q AIL+LRL+ L LE ++ E LL Sbjct: 428 ERAGDDAARPEWLESQYGVHEGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYRELLTL 487 Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517 ++ +L S ++ I E+ +K ++ + RRT E + AD + +I + Sbjct: 488 IGELLFILESPERLMEVIREELLAIKAQYNDA-----RRTELTE-NTADINI--EDLINQ 539 Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569 E + V +S++G+++ + + SA KE D ++ L A+T D IL S+ Sbjct: 540 EDVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIEKLLVANTHDTILCFSSR 599 Query: 570 G-----KAYTLPAGNLLSGRG 585 G K Y LP + S RG Sbjct: 600 GRLYWMKVYQLPEAS-RSARG 619 >gi|254468943|ref|ZP_05082349.1| DNA gyrase, A subunit [beta proteobacterium KB13] gi|207087753|gb|EDZ65036.1| DNA gyrase, A subunit [beta proteobacterium KB13] Length = 855 Score = 407 bits (1047), Expect = e-111, Method: Compositional matrix adjust. Identities = 265/754 (35%), Positives = 410/754 (54%), Gaps = 91/754 (12%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 VSL +++ YL YA+S I RA+PD+RDG KPVHRR+++AM E+ + +KKSARIV Sbjct: 11 VSLEDEMKKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELSNSYNRPYKKSARIV 70 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGD + YD++VR+AQ F RY L+ GQGNFG+IDGD+AAA RYTE RM+++ Sbjct: 71 GDVIGKYHPHGDTAAYDTIVRMAQDFSLRYMLVDGQGNFGSIDGDNAAAMRYTEIRMSKI 130 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 + +L +D+D VDF Y+ ++EP++ P++ PNLL NG+SGIAVGMAT+IP HN+ E+ Sbjct: 131 SHELLADIDKDTVDFGPNYDGSENEPLIMPTRIPNLLINGSSGIAVGMATNIPPHNLTEV 190 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 A + ++DNP ISI++LL +I GPDFPT GII I E YR GRG +RAR E Sbjct: 191 INACVEILDNPNISIDELLNFIPGPDFPTAGII-HGNSGIKEGYRTGRGRVVMRARTHFE 249 Query: 260 EVGRGSW-CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318 E +G I++ E+PYQV K L+EKIAEL+ K++ + D+RDES + V+ R Sbjct: 250 ETDKGKREAIIIDELPYQVNKKNLLEKIAELVNDKKLEGISDLRDESDKSGMRVVIELKR 309 Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378 PD+++ +++ + ++ F +NM L G+ P+++ L +L +L HRREV+ RR+ F Sbjct: 310 GEIPDVVLNNLYKQTQLQDSFGINMVALIDGQ-PKLLNLKQVLDAFLNHRREVITRRTVF 368 Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---------------------- 416 ++ R IL+GL +A N+DE+I II++ P PV Sbjct: 369 ELRKARERGHILEGLAVALENVDEMIKIIKS--SPSPVEAKTELMQREWKSSVVSSMLKQ 426 Query: 417 ----------MVSRFSLTEN-------QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKE 459 ++S + L EN Q IL +RL+ L LE+ +I +E ++ Sbjct: 427 GDATQYRPEGLLSVYGLKENGYKLSDIQAQEILQMRLQRLTGLEQDKIVNEYKEIMDVIA 486 Query: 460 KIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEP 519 + +LN + + I E+ E+KE + RR+ E A+ +++ +I + Sbjct: 487 DLIDILNKPDRVTSIIKTELEEIKETYGDD-----RRSEIVE--NAEDLSIED-LIAPQD 538 Query: 520 ITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG- 570 + V +S+ G+I R+ K A K+ D + A++ D IL S+ G Sbjct: 539 MVVTLSHTGYIKAQALDDYRAQKRGGRGKQATATKDDDFIDQMFVANSHDNILCFSSRGQ 598 Query: 571 ----KAYTLPAGNLLSGRGH----------GEAIQLLIDLNHNQDIVTAFVYDSTCKLLV 616 K Y +P G+ +S RG GE I ++ + D +++ +T K V Sbjct: 599 VYWLKVYEVPQGSRVS-RGKPIVNLFPLMPGEKINAILTVKEFVD--NEYIFMATAKGTV 655 Query: 617 VSSKGNAFIVEESEIIANTRK-GKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFS 674 + + F +N RK G +K+ + + + G++ + +V + K + F Sbjct: 656 KKTPLSDF--------SNPRKSGIIAIKLDNGDYLIGAGITKGENDIVLVSNHGKAVWFG 707 Query: 675 IDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707 + M R +GVR DGG +V+ I E Sbjct: 708 ESDVRSMGRNARGVRGMKLTDGG--EVLSLLIAE 739 >gi|254555175|ref|YP_003061592.1| DNA gyrase, A subunit [Lactobacillus plantarum JDM1] gi|254044102|gb|ACT60895.1| DNA gyrase, A subunit [Lactobacillus plantarum JDM1] Length = 853 Score = 407 bits (1047), Expect = e-111, Method: Compositional matrix adjust. Identities = 241/632 (38%), Positives = 371/632 (58%), Gaps = 38/632 (6%) Query: 12 LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71 L + V+L + +L+YA+S I RA+PD+RDG KPVHRRI++ MSE+G+ Sbjct: 6 LSNNRISDVNLSKTMRTSFLSYAMSVIVARALPDVRDGLKPVHRRILYGMSELGVTPDKP 65 Query: 72 FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131 +KKSARIVG+V+GK HPHGD ++Y+S+VR+AQ F RY L+ G GNFG++DGD AAA RY Sbjct: 66 YKKSARIVGDVMGKYHPHGDSAIYESMVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAMRY 125 Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191 TEARM+++A +L+ +++D VD++ Y++ + EP V P++FPNLL NG +GIAVGM T+I Sbjct: 126 TEARMSKIAVEMLRDINKDTVDWQPNYDDTEREPAVLPARFPNLLVNGATGIAVGMTTNI 185 Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251 P HN+ E+ A L+DNP+ ++ L+E + GPDFPTGGI++ + I ++Y+ GRG Sbjct: 186 PPHNLAEVISAIHLLMDNPDATVADLMEVLPGPDFPTGGIVM-GKSGIRKAYQTGRGNII 244 Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVR 310 VRA+ +++ G I+VTE+PY V K++LIE+IA L K I + DI DES E +R Sbjct: 245 VRAKVDIQDQKNGKQRIIVTELPYMVNKAKLIERIAGLARDKEIEGITDINDESDREGMR 304 Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370 IV+ + R +++ +++ ++ M+T F NM + G P+V+ L IL +L H+ + Sbjct: 305 IVIDVR-RDASASVILNNLYKMTLMQTNFGFNMLAIVKG-APKVLSLKQILIYYLEHQED 362 Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQ 427 V+ RR+ F ++ R IL+GL IA +IDEIIAIIR K ++ + L++ Q Sbjct: 363 VIRRRTEFDLKKAQARAHILEGLRIALDHIDEIIAIIRQSQTSEIAKNQLMDNYGLSDKQ 422 Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487 AIL++RL L LE +I+SE +LL +L S K + NQI E E+ EI Sbjct: 423 AQAILDMRLVRLTGLEREKIESEYQDLLKAIADYKEILAS-KDRINQIIYE--ELMEIQR 479 Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD-------- 539 K D R EV + + +IE+E + V +++ G+I+ L + Sbjct: 480 KFGDKRRTELMVGEVL----SIEDEDLIEEEEVAVTLTHNGYIKRLPTTEFKSQHRGGRG 535 Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL---------------PAGNLLSGR 584 + + + D ++ L T D +L + GK Y + P NLL G Sbjct: 536 IQGMDVHDDDFIEHLLTTSTHDVLLFFTNAGKVYRMKAYEIPEYGRTAKGIPVINLL-GV 594 Query: 585 GHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLV 616 GE IQ ++++ + +++ +T K +V Sbjct: 595 NSGEKIQAVVNVTGDASASDNYLFFTTVKGVV 626 >gi|317131015|ref|YP_004090329.1| DNA gyrase, A subunit [Ethanoligenens harbinense YUAN-3] gi|315468994|gb|ADU25598.1| DNA gyrase, A subunit [Ethanoligenens harbinense YUAN-3] Length = 846 Score = 407 bits (1047), Expect = e-111, Method: Compositional matrix adjust. Identities = 243/619 (39%), Positives = 366/619 (59%), Gaps = 28/619 (4%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 V +R +E+ +L Y++S I RA+PD+RDG KPVHRRI++AM E L A++KSA V Sbjct: 11 VEIREEMEKSFLEYSMSVIVSRALPDVRDGLKPVHRRILYAMYEDNLLPTNAYRKSATTV 70 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G V+G+ HPHGD SVYD+LVR+AQ F RYPL+ G GNFG+IDGD AAYRYTEARM+++ Sbjct: 71 GNVLGRYHPHGDASVYDALVRMAQSFSLRYPLVDGHGNFGSIDGDGPAAYRYTEARMSRI 130 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 + +LQ ++++ VDF+ +++ EP+V PS+FPN+L NG+SGIAVGMAT+IP HN+ E+ Sbjct: 131 SLEMLQDIEKETVDFQPNFDDVRKEPIVIPSRFPNILVNGSSGIAVGMATNIPPHNLGEV 190 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 + LIDNP+ ++E+L +I GPDFPTGGII+ R I E+Y GR +RA+ +E Sbjct: 191 IDGMALLIDNPDATLEELTAHIQGPDFPTGGIIM-GRAGIREAYVKGRSRITLRAKATIE 249 Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFPKNR 318 E G I+VTEIPY V K+R++E IAEL KRI + D+RDES E +RIV+ K R Sbjct: 250 EDDNGRSRIIVTEIPYMVSKARIVEGIAELHKEKRIEGISDLRDESDREGLRIVVELK-R 308 Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378 +P +++ ++ S ++ P+ M L G P+V+PL IL E++ + +V+ RR+ + Sbjct: 309 DANPQVVLNRLYTYSQLQETVPVIMLALVNGH-PRVLPLRDILTEYIHFQEQVVTRRTQY 367 Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAILNLR 435 ++ + R IL+GL IA IDE+I I+R + K ++ RF L + Q AI+ +R Sbjct: 368 DLRKAEERAHILEGLKIALDFIDEVIRILRASKSIPEGKAALMERFELDDIQAQAIVQMR 427 Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495 L L LE +I+ EL L + ++L ++ + E EVK F R Sbjct: 428 LGQLTNLEREKIEEELAALETKIANFKAILADEQRILQIVKEEALEVKAKFGDE-----R 482 Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKS---HSV-----DLSALHFKE 547 RT VS + +I E + + ++N G+I+ L + HS ++ L +E Sbjct: 483 RTRIENVSGEVDV---EDLIPVEDVVLTLTNFGYIKRLPAAAYHSQRRGGRGVNGLTRRE 539 Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD-IVTAF 606 D + T D +L ++ G+ Y L + G + + + L QD +TA Sbjct: 540 EDVARELFVCSTHDFVLFFTSHGRCYRLKGYEVPEGSRTSKGMNVANILPVAQDENITAM 599 Query: 607 V----YDSTCKLLVVSSKG 621 + ++ C L++V+ KG Sbjct: 600 IKVPKFEEDCYLVMVTKKG 618 >gi|329113567|ref|ZP_08242347.1| DNA gyrase subunit A [Acetobacter pomorum DM001] gi|326697089|gb|EGE48750.1| DNA gyrase subunit A [Acetobacter pomorum DM001] Length = 920 Score = 407 bits (1047), Expect = e-111, Method: Compositional matrix adjust. Identities = 244/633 (38%), Positives = 356/633 (56%), Gaps = 63/633 (9%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 V++ + YLAYA+S I RA+PD+RDG KPVHRRI++AM E G + ++KSAR V Sbjct: 19 VTIEEEMRSSYLAYAMSVIVSRALPDVRDGLKPVHRRILYAMHESGFTYDKPYRKSARAV 78 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 GEV+GK HPHGD S+YD++VR+AQ + R LI GQGNFG++DGDS AA RYTEAR+ + Sbjct: 79 GEVMGKYHPHGDSSIYDAMVRMAQSWSMRVKLIDGQGNFGSVDGDSPAAMRYTEARLAKA 138 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 + +L +D D VDF+ Y+E + EP V P+ FPNLL NG +GIAVGMAT+IP+HN E+ Sbjct: 139 STFLLNDIDRDTVDFQPNYDESEEEPTVLPATFPNLLINGATGIAVGMATNIPTHNPSEV 198 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 +A LALI NP++S++ L+EY+ GPDFPTGGII+ R I ++ GRG +RA+ +E Sbjct: 199 IDATLALIANPDLSLDDLMEYVPGPDFPTGGIIL-GRSGIRSAFATGRGAVIIRAKADIE 257 Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319 E+ + I+VTEIPYQV K+ L E+IA+L+ K+I + DIRDES V+ R Sbjct: 258 EIRKDRKAIIVTEIPYQVNKATLQERIADLVRNKQIEGIADIRDESDRSGMRVVIEIKRD 317 Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379 P++++ ++ + ++T F +NM L G+ P++M L +L+ ++A R EV+ RRS F Sbjct: 318 ATPEVVLNQLYRFTQLQTSFGVNMLALDGGK-PRLMGLKDVLEAFIAFREEVILRRSRFE 376 Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAIIRN----------------------------ED 411 + R IL GL+IA NID +IA+IR D Sbjct: 377 LNKARDRGHILVGLVIAVANIDAVIALIRGAPDAAAAREALMAAQWDAAEVEPLLALIHD 436 Query: 412 KPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQ 471 V+ + LTE Q IL LRL+ L LE +I+ EL + ++ ++ S ++ Sbjct: 437 DGNVVVDGKVRLTEAQARGILELRLQRLTGLERDKIQQELSEVAQRINELLEIIGSHVRR 496 Query: 472 WNQIACEIREVK-EIFSKSTDLGRRRTTFCEVSRADKATLQ--QAMIEKEPITVVISNRG 528 + E+ + EIF+ E+ AD A Q +++IE + V I+ G Sbjct: 497 MEVLRDELSVARAEIFTPR---------MTEI--ADYAGDQDDESLIEPGQMVVTITREG 545 Query: 529 WI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY-----TL 575 +I R+ + + D + + +AHT ++ S+ GK Y L Sbjct: 546 FIKRTPLDVFRAQNRGGRGRTGASTRGDDIVVRSFNAHTHQWVMFFSSGGKVYRQKVWRL 605 Query: 576 P-AGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV 607 P AG GR + LL DL D +TA + Sbjct: 606 PEAGPAAKGRA---LVNLLPDL--GSDSITAVL 633 >gi|170720560|ref|YP_001748248.1| DNA gyrase subunit A [Pseudomonas putida W619] gi|169758563|gb|ACA71879.1| DNA gyrase, A subunit [Pseudomonas putida W619] Length = 923 Score = 407 bits (1047), Expect = e-111, Method: Compositional matrix adjust. Identities = 235/601 (39%), Positives = 360/601 (59%), Gaps = 57/601 (9%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 V++ L + YL YA+S I RA+PD RDG KPVHRR++ AMSE+G D+ +KKSAR+V Sbjct: 11 VNIEDELRQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDWNKPYKKSARVV 70 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG++DGD+AAA RYTE RM ++ Sbjct: 71 GDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRYTEVRMAKL 130 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A +L + ++ VD+ Y+ + P V P++ PNLL NG+SGIAVGMAT+IP HN+ E+ Sbjct: 131 AHELLADLHKETVDWVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHNLGEV 190 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 + LALIDNPE+++++L+++I GPDFPT GII R+ I+E+YR GRG +RAR +E Sbjct: 191 IDGCLALIDNPEVTVDELMQFIPGPDFPTAGII-NGRQGIIEAYRTGRGRIYMRARSEIE 249 Query: 260 EVGR--GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317 ++ + G IVVTE+PYQ+ K+RLIEKIAEL+ K+I + ++RDES +D ++ Sbjct: 250 DIDKVGGRQQIVVTELPYQLNKARLIEKIAELVKDKKIEGITELRDESDKDGMRIVIELR 309 Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377 R P++++ +++ + +++ F +N+ L GR P+V+ L +L+ ++ HRREV+ RR+ Sbjct: 310 RGEVPEVVLNNLYQQTQLQSVFGINVVALIDGR-PRVLNLKDLLEAFVRHRREVVTRRTV 368 Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK----------------PVMVSR- 420 F ++ R IL+G +A NID +IA+I+ P VMV R Sbjct: 369 FELRKARERGHILEGQAVALSNIDPVIALIKASPTPSEAREALIATAWESSAVQVMVERA 428 Query: 421 --------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEK 460 + L+ Q AIL+LRL L LE ++ +E +L + + Sbjct: 429 GADSCRPEDLPEQYGLRDGKYYLSPEQAQAILDLRLHRLTGLEHEKLLAEYQEILEQIGE 488 Query: 461 IDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI 520 + +L+S ++ I E+ ++ + + RRT E+ A MI +E Sbjct: 489 LIRILSSAERLMEVIREELEAIRAEYGDA-----RRT---EILNASHDLNYGDMIPEEER 540 Query: 521 TVVISNRGWIRS--LKSHSVDL------SALHFKEGDSLKIALHAHTTDRILLLSTDGKA 572 V IS+ G+ ++ L ++ SA K+ D ++ L A++ +LL S+ GK Sbjct: 541 VVTISHGGYAKTQPLSAYQAQRRGGKGKSATGVKDEDYIEHLLVANSHATLLLFSSKGKV 600 Query: 573 Y 573 Y Sbjct: 601 Y 601 >gi|21104366|dbj|BAB93453.1| DNA gyrase A [Actinobacillus actinomycetemcomitans] Length = 887 Score = 407 bits (1046), Expect = e-111, Method: Compositional matrix adjust. Identities = 253/662 (38%), Positives = 381/662 (57%), Gaps = 71/662 (10%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 +++ VSL L+ YL YA+S I RA+PD+RDG KPVHRR++ AM E G + ++K Sbjct: 6 QDITPVSLEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEGGNLYNKPYRK 65 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 SARIVG+VIGK HPHGD +VYD+LVR+AQPF RY L+ GQGNFG++DGD+ AA RYTEA Sbjct: 66 SARIVGDVIGKYHPHGDSAVYDTLVRMAQPFSLRYMLVDGQGNFGSVDGDAPAAMRYTEA 125 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 RMT++A +L +D++ V+F Y+ + P V P+K P LL NG+SGIAVGMAT+IP H Sbjct: 126 RMTKIAHELLADLDKETVNFVPNYDGSEMIPEVLPTKVPALLVNGSSGIAVGMATNIPPH 185 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 N+ E+ + LA I+N +I+I++L+ +I GPDFPT +I R+ I E+Y+ GRG VRA Sbjct: 186 NLGEVLDGCLAYIENNDITIDELMSHIPGPDFPTAALI-NGRKGIEEAYKTGRGKIYVRA 244 Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVL 313 R +E +G I+V EIPYQV K++LIEKIA+ + K+I + +RDES +D +RIV+ Sbjct: 245 RAEIETDEKGRESIIVNEIPYQVNKAKLIEKIADFVKDKKIEGISGLRDESDKDGMRIVI 304 Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373 K ++ ++++ +++ L+ M+ F +N+ L G+ P+++ L +++ ++ HRREV+ Sbjct: 305 EIKRDAVG-EVVLNNLYALTQMQVTFGINIVALDHGQ-PKLLNLKQLIEAFVLHRREVVT 362 Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR------------- 420 RR+ F ++ R IL+GL IA N+D II +IR P P R Sbjct: 363 RRTIFELRKARERTHILEGLAIALANVDPIIELIRK--APNPENAKRELLTHPWQLGHVA 420 Query: 421 --------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNL 454 + LTE Q AIL+LRL+ L L +I E L Sbjct: 421 DMLAASGVDAARPEDLDEQYGIRDGLYYLTEVQAQAILDLRLQKLTNLGHDEILDEYKKL 480 Query: 455 LAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAM 514 L K+ +L S ++ I E+ +++E F+ RRT E++ A + + Sbjct: 481 LDAIGKLLYILRSPERLMEVIREELEQIREQFNDP-----RRT---EITAASGDINLEDL 532 Query: 515 IEKEPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLL 566 I +E + V +S+ G+++ + + SA KE D ++ L A+T D IL Sbjct: 533 IAQEDVVVTLSHEGYVKYQPITDYEAQRRGGKGKSATKMKEEDFIEKLLVANTHDTILCF 592 Query: 567 STDGKAYTLPAGNL-LSGRG-HGEAIQLLIDLNHNQDI-----VTAFVYDSTCKLLVVSS 619 S+ G+ Y L L + RG G I ++ LN N+ I V A+ D K +V+++ Sbjct: 593 SSRGRLYWLKVYQLPQASRGARGRPIVNILPLNENERITAILPVAAYEED---KFVVMTT 649 Query: 620 KG 621 G Sbjct: 650 AG 651 >gi|154496139|ref|ZP_02034835.1| hypothetical protein BACCAP_00423 [Bacteroides capillosus ATCC 29799] gi|150274694|gb|EDN01758.1| hypothetical protein BACCAP_00423 [Bacteroides capillosus ATCC 29799] Length = 850 Score = 407 bits (1046), Expect = e-111, Method: Compositional matrix adjust. Identities = 232/576 (40%), Positives = 350/576 (60%), Gaps = 27/576 (4%) Query: 26 LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85 +E+ Y+ YA+S I RA+PD+RDG KPVHRRI++AM E L FKKSA VG+V+G+ Sbjct: 28 MEKSYIEYAMSVIVGRALPDVRDGLKPVHRRILYAMYEDNLTADKPFKKSATCVGDVLGR 87 Query: 86 LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145 HPHGD SVYD+LVRLAQ F RY L+ G GNFG+IDGD AAYRYTEAR++++++ +L+ Sbjct: 88 YHPHGDASVYDALVRLAQDFSMRYMLVDGHGNFGSIDGDPPAAYRYTEARLSKISDEMLR 147 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 +++D VD+ ++E EP V PS+FPNLL NG+SGIAVGMAT+IP HN+ E+ A + Sbjct: 148 DIEKDTVDWDPNFDETRKEPKVLPSRFPNLLVNGSSGIAVGMATNIPPHNLTEVINATIC 207 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265 ++DNPE + L+E+I GPDFPT GII+ R I +Y GRG VRAR EE G+ Sbjct: 208 VLDNPEAELCDLMEHIKGPDFPTKGIIM-GRSGIRAAYATGRGRLCVRARTEFEEFGKDR 266 Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325 I+VTEIPYQV K LI+ +A+ + KR+ + DIRDES + ++ R +P ++ Sbjct: 267 TRIIVTEIPYQVNKRMLIKNMADQVEDKRLDGISDIRDESDRNGMRIVIELKRDANPQVV 326 Query: 326 MESIFMLSDMETRFPLNMNVL--SMGRV-PQVMPLDGILKEWLAHRREVLFRRSSFRMQA 382 + +F + ++T F +NM L G++ P+++ L IL E++A++ +V+ RR+ + ++ Sbjct: 327 LNRLFAQTQLQTTFAINMLALVEVNGKLQPRILSLRHILDEYIAYQEQVIIRRTKYDLKK 386 Query: 383 IDRRVEILKGLLIAYLNIDEIIAIIRNE-DKPKPVMVSRFSLTENQVDAILNLRLRSLRK 441 R +L+GLLIA NIDE+I IIR+ D K ++ RFSL + Q AIL++RL++L+ Sbjct: 387 AQERAHLLEGLLIAQDNIDEVIHIIRSRYDDAKEKLMERFSLDDVQAQAILDMRLKALQG 446 Query: 442 LEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCE 501 L+ ++++E L A LL S + + E+ +++ + G R T E Sbjct: 447 LDREKLENEYKELEARIAYFQQLLGSEEMLRGVLKDELIAIRDKY------GDERVT--E 498 Query: 502 VSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD--------LSALHFKEGDSLKI 553 + + + +IE+E ++ G+I+ L + + ++A+ KE D + Sbjct: 499 IQDVEDEIDIEDLIEEEECVFTLTAGGYIKRLPASTYKTQRRGGKGITAMATKEEDYVDT 558 Query: 554 ALHAHTTDRILLLSTDG-----KAYTLP-AGNLLSG 583 A T D IL + G K Y +P AG + G Sbjct: 559 VFTASTHDFILFFTNKGRVHRKKGYQIPEAGRMAKG 594 >gi|154147908|ref|YP_001406795.1| DNA gyrase subunit A [Campylobacter hominis ATCC BAA-381] gi|153803917|gb|ABS50924.1| DNA gyrase, A subunit [Campylobacter hominis ATCC BAA-381] Length = 875 Score = 407 bits (1046), Expect = e-111, Method: Compositional matrix adjust. Identities = 236/611 (38%), Positives = 376/611 (61%), Gaps = 32/611 (5%) Query: 10 NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69 N +++ V + +++ YL Y++S I RA+PD RDG KPVHRRI++AM+++G+ Sbjct: 3 NLFENQDIVEVDVEDSIKTSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMNDLGVSSK 62 Query: 70 AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129 + +KKSARIVG+VIGK HPHGD +VYD+LVR+AQ F R P + GQGNFG+IDGDSAAA Sbjct: 63 SPYKKSARIVGDVIGKYHPHGDTAVYDALVRMAQDFSMRIPAVDGQGNFGSIDGDSAAAM 122 Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189 RYTEARMT +AE +L+ +D+D VDF Y+E +EP V P++ PNLL NG+SGIAVGMAT Sbjct: 123 RYTEARMTPLAEELLKDLDKDTVDFVPNYDESLNEPDVLPARVPNLLLNGSSGIAVGMAT 182 Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249 +IP H++ E+ + L L+D+ S+E+++ I GPDFPTGG+I ++ I+++YR GRG Sbjct: 183 NIPPHSLNELVDGLLLLLDDKNASLEQIMTKIKGPDFPTGGVIF-GKKGIIDAYRTGRGR 241 Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-ED 308 ++RA+ +E+ I++ E+PYQ K+RL+E+IA L+ K I + ++RDES E Sbjct: 242 VKIRAKTHIEQKSNKD-IIIIDELPYQTNKARLVEQIATLVKDKSIDGISEVRDESDREG 300 Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368 +R+V+ K ++ ++++ ++F + ME F + M + + P++ L +LK +L HR Sbjct: 301 IRVVIELKRDAM-SEIVLNNLFKQTTMEATFGVIMLAID-NKEPKIFTLIELLKLFLNHR 358 Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTE 425 + V+ RR+ F +Q R IL+GL IA NIDE+I +I+ + + + +V++FSL+E Sbjct: 359 KTVIIRRTIFDLQKARARAHILEGLKIALDNIDEVIELIKTSADTNVAREGLVNQFSLSE 418 Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485 Q +AIL+++L L LE +I +EL +LAE E++D++L S I E+ E+K Sbjct: 419 IQANAILDMKLNRLTGLEREKIDNELKEILAEIERLDAILKSETLIEQIIKDELIEIKNK 478 Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS---- 541 F+ E+ + +I E + V I++RG+I+ + S + + Sbjct: 479 FNCP--------RITEIVDDYDDIEIEDLIPNENMIVTITHRGYIKRVPSKTYEKQKRGG 530 Query: 542 ----ALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQL 592 A+ + D ++ + D ++ ++ G K Y +P G S G+A+ Sbjct: 531 KGKVAITTYDDDFIEQFFTSDAHDTLMFVTNHGQLYWLKVYKIPEG---SRTAKGKAVVN 587 Query: 593 LIDLNHNQDIV 603 LIDL ++ I+ Sbjct: 588 LIDLQADEKIM 598 >gi|58698209|ref|ZP_00373130.1| DNA gyrase, A subunit [Wolbachia endosymbiont of Drosophila ananassae] gi|58535290|gb|EAL59368.1| DNA gyrase, A subunit [Wolbachia endosymbiont of Drosophila ananassae] Length = 880 Score = 407 bits (1046), Expect = e-111, Method: Compositional matrix adjust. Identities = 240/629 (38%), Positives = 361/629 (57%), Gaps = 65/629 (10%) Query: 35 LSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSV 94 +S I RAIPD+RDGFKPVHRRI++AMS G D G +KK+ARIVG+V+GK HPHGD ++ Sbjct: 1 MSVIISRAIPDVRDGFKPVHRRILYAMSRAGFDAGKPYKKAARIVGDVMGKYHPHGDAAI 60 Query: 95 YDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDF 154 YDSLVR+AQ F PLI GQGNFG+IDGD A+ RYTEAR+ +V+ +L +DED VDF Sbjct: 61 YDSLVRMAQDFSLLLPLIDGQGNFGSIDGDPPASMRYTEARLQKVSHFLLNDIDEDTVDF 120 Query: 155 RDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISI 214 R Y+ ++EPVV P++FP+LL NG SG+AVGMAT+IPSHN+ EI +A + +DNPE+++ Sbjct: 121 RPNYDGNETEPVVLPAEFPHLLVNGASGVAVGMATNIPSHNLGEIIDACMLYVDNPEVTL 180 Query: 215 EKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIP 274 ++LLE + GPDFPTGG I+ R I ++ GRG V+ + +E++ + IV+ EIP Sbjct: 181 DELLEVMPGPDFPTGGTIL-GRSGIRSAFATGRGSIVVQGKTHIEDLPQDRQAIVIDEIP 239 Query: 275 YQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSD 334 YQV K +LIEKI EL+ KRI + +IRDES + V+ R+ + ++ I L+ Sbjct: 240 YQVNKVKLIEKIGELVKEKRIDGITEIRDESDKSGIRVVIDLRRNAEASFILNQILGLTP 299 Query: 335 METRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLL 394 + + F +N VL+ R P +M L I++ ++ R+EVL RR+ FR++ + I GL Sbjct: 300 LRSSFSVNTLVLNNNR-PALMSLKEIIEAFIDFRKEVLIRRTEFRLRKTREKAHIYIGLY 358 Query: 395 IAYLNIDEIIAIIRNEDKPKPV--------------------MVSR---------FSLTE 425 IA L+IDE+I IIR P ++S + LTE Sbjct: 359 IAVLSIDEVIKIIRGAKDPAEASRELLNKEWKTSNEINTIIELISDSASFLKDGVYRLTE 418 Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485 Q+ AIL+++L+ L LE+ ++++EL +++ ++ + L SG++ +I ++E+K Sbjct: 419 LQIKAILDMKLQRLTGLEKDKLEAELSSMINLIKEYIAFLGSGEKLMKEIKNNLQEIKNR 478 Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK-SH-------S 537 F+ R+T+ E +D + +I +E + + ++ G+I+ +K SH Sbjct: 479 FAVP-----RKTSIEE---SDTDIEAEDLIPQEDMVITVTMNGYIKRVKLSHYRTQRRGG 530 Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL----LSGRG-------- 585 KE D + +T +L S G+ Y L L + RG Sbjct: 531 KGKLGQGLKEEDVITELFVTNTHTSVLFFSNIGRVYRLKVYKLPLAEPTARGRALVNIFP 590 Query: 586 --HGEAIQLLIDL----NHNQDIVTAFVY 608 GE I ++ L + NQ+IV Y Sbjct: 591 LAEGETITNIMPLPSENDENQNIVFTTAY 619 >gi|312142415|ref|YP_003993861.1| DNA gyrase, A subunit [Halanaerobium sp. 'sapolanicus'] gi|311903066|gb|ADQ13507.1| DNA gyrase, A subunit [Halanaerobium sp. 'sapolanicus'] Length = 832 Score = 407 bits (1046), Expect = e-111, Method: Compositional matrix adjust. Identities = 236/593 (39%), Positives = 357/593 (60%), Gaps = 29/593 (4%) Query: 30 YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89 YL YA+S I RA+PD+RDG KPVHRRI++A++++G+ KKSARIVGEV+GK HPH Sbjct: 21 YLDYAMSVIVGRALPDVRDGLKPVHRRILYALNDLGMTPNKPHKKSARIVGEVLGKYHPH 80 Query: 90 GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDE 149 GD +VYD++VR+AQ F RYPLI G GNFG++DGDSAAA RYTEARM+ + +L +++ Sbjct: 81 GDTAVYDTMVRMAQDFSYRYPLIDGHGNFGSVDGDSAAAMRYTEARMSSITTELLTDINK 140 Query: 150 DAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDN 209 + VDF ++E EP V P++FPNLL NG++GIAVGM+TSIP HN+ E+ + + LI Sbjct: 141 ETVDFTPNFDESLEEPQVLPARFPNLLVNGSAGIAVGMSTSIPPHNLGEVIDGVVKLITK 200 Query: 210 PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIV 269 PEI+ ++L+ I GPDFPTGG I+ R SI ++Y+ GRG VRA+ +E++ I+ Sbjct: 201 PEITTKELMTIIKGPDFPTGGQIM-GRGSIYKAYKTGRGKLTVRAKTRIEDLKVNRKQII 259 Query: 270 VTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKNRSLDPDLLMES 328 V E+P+QV K+RLI+KIA L+ ++I + DIRDES D +RIV+ K R P++++ Sbjct: 260 VDELPFQVNKARLIKKIANLVKDEKIDAISDIRDESDRDGMRIVIELK-REATPEVVLNQ 318 Query: 329 IFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVE 388 ++ S ++ F M L + P+V+ L IL+ +L H+++V+ RR+ + + R Sbjct: 319 LYKHSRLQITFSTIMIAL-VNNEPKVLSLKEILEHYLEHQKKVITRRTKYDLDKALDRAH 377 Query: 389 ILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEY 445 IL+G IA NIDEI+ +I+ + D + ++ + L+E Q +AIL +RL+SL LE Sbjct: 378 ILEGYKIALANIDEIVEMIKEAEDVDTARIALMDDYELSEIQANAILRMRLQSLTGLERN 437 Query: 446 QIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRA 505 +I +E D L A+ + S+L + N + EI E+K+ ++ +RRT Sbjct: 438 KIDTEYDELQAKITRYRSILADEDKLLNIVKKEILEIKDKYND-----KRRTKIM----- 487 Query: 506 DKATLQQAMIEKEPITVVI--SNRGWI--------RSLKSHSVDLSALHFKEGDSLKIAL 555 DK T + E +VI +++G+I RS + + + KE D ++ Sbjct: 488 DKVTDLEIEDLIEEEQIVITMTHQGYIKRMALDLYRSQRRGGKGVIGISTKEEDFVENIF 547 Query: 556 HAHTTDRILLLSTDGKAYTLPAGNL-LSGR-GHGEAIQLLIDLNHNQDIVTAF 606 T + L S G+ Y L + +GR G AI L++L + I Sbjct: 548 TTTTHHKFLFFSNQGRVYRLKGYQIPEAGRQARGTAIINLLELKEEERITAVI 600 >gi|78485535|ref|YP_391460.1| DNA gyrase, A subunit [Thiomicrospira crunogena XCL-2] gi|78363821|gb|ABB41786.1| DNA gyrase subunit A [Thiomicrospira crunogena XCL-2] Length = 871 Score = 407 bits (1046), Expect = e-111, Method: Compositional matrix adjust. Identities = 239/601 (39%), Positives = 358/601 (59%), Gaps = 58/601 (9%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 +SL +++ YL+YA+S I RA+PD+RDG KPVHRR+++AM+E+G + +KKSARIV Sbjct: 11 ISLEDEMQQSYLSYAMSVIVGRALPDVRDGLKPVHRRVLYAMNELGNSWNKPYKKSARIV 70 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG+IDGDS AA RYTE RM+++ Sbjct: 71 GDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSPAAMRYTEVRMSKI 130 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A +L ++++ V+F Y+ +SEP V P++ PNLL NG+SGIAVGMAT+IP HN+ E Sbjct: 131 AHELLADLEKETVNFTPNYDGSESEPDVLPTRIPNLLVNGSSGIAVGMATNIPPHNLNET 190 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 A +ALIDNPE++I +L+E++ GPDFPT GII + I E+Y GRG ++RAR VE Sbjct: 191 VSACIALIDNPELTISELMEFLPGPDFPTYGII-NGTKGIREAYETGRGRVQMRARTSVE 249 Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKNR 318 G I+V EIPYQV K++LIE+IAEL+ K+I + +RDES +D +RIV+ K R Sbjct: 250 TDKNGKSSIIVHEIPYQVNKAKLIERIAELVKEKKIEGISALRDESDKDGMRIVIEVK-R 308 Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378 P++L+ +++ + M+T F +NM L + P+++ L +L+ ++ HRREV+ RR+ + Sbjct: 309 GEVPEVLINNLYKQTTMQTVFGINMVAL-INSQPKLLNLKDVLEAFIRHRREVVTRRTIY 367 Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR--------------- 420 ++ + IL+GL +A NIDE+I +I+ P K M+ R Sbjct: 368 DLRKAREKAHILEGLALALNNIDEMIELIKASPSPSVAKERMLERDWSIGNVEQLLEKVE 427 Query: 421 --------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEK 460 + L+ Q AIL +RL L LE+ +I +E +L+ + + Sbjct: 428 MKDVRPEDLPEGFGADGSGVYKLSPAQAQAILEMRLHRLTGLEQDKIIAEYRDLVLKIAE 487 Query: 461 IDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI 520 +L + + + E++EV E F +RRT E+ + + + +I E Sbjct: 488 FLEILRNPDRLTEVVREELQEVVENFGD-----KRRT---EIDHSYQDIDAEDLIAVENR 539 Query: 521 TVVISNRGWIRS--LKSHSVDL------SALHFKEGDSLKIALHAHTTDRILLLSTDGKA 572 V +S G+I++ L + SA KE D + + A T D +L S GK Sbjct: 540 IVTLSRDGYIKTQPLSDYQAQRRGGRGKSATQMKEDDEIGQMIVASTHDMLLCFSNRGKL 599 Query: 573 Y 573 Y Sbjct: 600 Y 600 >gi|326802622|ref|YP_004320440.1| DNA gyrase, A subunit [Aerococcus urinae ACS-120-V-Col10a] gi|326650616|gb|AEA00799.1| DNA gyrase, A subunit [Aerococcus urinae ACS-120-V-Col10a] Length = 880 Score = 407 bits (1046), Expect = e-111, Method: Compositional matrix adjust. Identities = 237/706 (33%), Positives = 404/706 (57%), Gaps = 38/706 (5%) Query: 12 LVEENVKAVSLRFALEER--YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69 +VEE+ + + E R +L YA+S I RA+PD+RDG KPVHRRI++ M+E+G+ Sbjct: 1 MVEEHKQPAPREISHEMRNSFLDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPD 60 Query: 70 AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129 +KKSARIVG+V+GK HPHGD ++Y+S+VR+AQ F RY L+ G GNFG++DGD AAA Sbjct: 61 KPYKKSARIVGDVMGKYHPHGDSAIYESMVRMAQDFSYRYMLVDGHGNFGSVDGDQAAAM 120 Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189 RYTEAR++++A +++ ++++ VDF Y+ E+ EP V PS+FPNLL NG +GIAVGM T Sbjct: 121 RYTEARLSKIALEMVRDINKNTVDFIPNYDGEEREPEVLPSRFPNLLVNGATGIAVGMTT 180 Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249 +IP HN+ E+ +A L+ NP+ + + L+E + GPDFPT GI++ + I ++Y G+G Sbjct: 181 NIPPHNLSEVIQALHILMKNPQATTQDLMEALPGPDFPTAGIVI-GKAGIKKAYETGKGR 239 Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309 VRAR ++ + G I+V+EIPY V K++L+E+IA+L KRI + +RDE+ Sbjct: 240 IIVRARAEIDTMASGKERIIVSEIPYMVNKAKLVERIADLARDKRIDGITAVRDETGRQG 299 Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369 ++ + +++ ++F + M+T F NM + G VP+ + L IL+ +L H+ Sbjct: 300 MRIVIECRKDASASVILNNLFKQTQMQTNFNFNMVAIDQG-VPKTLSLKQILRRYLDHQE 358 Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTEN 426 E++ RRS F + + R IL+GL IA +IDEI+ I+R+ D+ K + + ++ L++ Sbjct: 359 EIIRRRSIFEKEKAEARAHILEGLQIALDHIDEIVNILRSSKTGDQAKTIFMDQYGLSDK 418 Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486 Q AIL++RL L LE +I +E +L+AE ++ +L S ++++ I E+ E+++ F Sbjct: 419 QAQAILDMRLVRLTGLEREKIDNEHKDLMAEIAYLNEVLASEEKRYEIIYQELLEIEKRF 478 Query: 487 SKSTDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSLKSHSV------- 538 RRT E+ + L+ + +IE+ + + +S +G+I+ ++ Sbjct: 479 GDE-----RRT---EIRVGEITNLEDEDLIEESNVLITLSRKGYIKRVEDSEYRTQNRGG 530 Query: 539 -DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS-GR-GHGEAIQLLID 595 + + ++GD + L T D IL + G+ + + + GR G I L++ Sbjct: 531 RGVKGMALQDGDHIDAMLSTSTHDVILCFTDRGRVFQIKGYEIPEYGRAAKGLPIVNLLN 590 Query: 596 LNHNQDIVTAF-------VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE 648 L ++ + DS V+ +G E G + + ++ Sbjct: 591 LQEDEQVRGVINVTPSDKETDSEDYFFFVTKQGTVKRTPVEEYFNIRNNGLIAINLRDDD 650 Query: 649 KMKLVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSRG----KGVRL 689 ++ V++ +G+ ++G ++ + F+ D + M R +G+RL Sbjct: 651 ELVAVLQTSGEDNIILGSHQGYAVSFAEDDVRSMGRTATGVRGIRL 696 >gi|50364822|ref|YP_053247.1| DNA gyrase subunit A [Mesoplasma florum L1] gi|50363378|gb|AAT75363.1| DNA gyrase subunit A [Mesoplasma florum L1] Length = 825 Score = 407 bits (1046), Expect = e-111, Method: Compositional matrix adjust. Identities = 268/772 (34%), Positives = 423/772 (54%), Gaps = 63/772 (8%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 +K + + + + +L Y++S I RA+PDL+DG KPVHRRII+AM+++G+ KKSA Sbjct: 13 IKGIDIAAEVRKDFLEYSMSVIVSRALPDLKDGLKPVHRRIIYAMNDLGITADKPHKKSA 72 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 RIVGEVIGK HPHGD +VYDS+VR+AQ F RYPL+ G GNFG+IDGD AAA RYTEAR+ Sbjct: 73 RIVGEVIGKYHPHGDTAVYDSMVRMAQDFSYRYPLVDGHGNFGSIDGDGAAAMRYTEARL 132 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 +V+ I++ +D + V F D Y+ + EP FPNLLANG GIAVGMATSIP HN+ Sbjct: 133 AKVSNFIIKDIDMNTVPFVDNYDASEREPAYLTGYFPNLLANGAMGIAVGMATSIPPHNL 192 Query: 197 QEICEAALALIDNPEISIEKLLE-YIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 +E+ A A IDN +I+I+++L+ +I+GPDFPTG ++ + E Y+ GRG +RA+ Sbjct: 193 REVISAIHAFIDNKDITIDEILDNHIMGPDFPTGALMTNGIR-MREGYKTGRGAVTIRAK 251 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLF 314 +EE R + I +TEIPYQ K++LIE+IAEL+ K++ + DIRDES E +RIV+ Sbjct: 252 VALEENDRHARFI-ITEIPYQTNKAKLIERIAELVKTKQLEGISDIRDESNYEGIRIVIE 310 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSM-GRVPQVMPLDGILKEWLAHRREVLF 373 + R +PD+++ ++ ++++T + LN+ LS+ +P ++ L I+K ++ + V+ Sbjct: 311 LR-RDSNPDVVLSKLYKFTNLQTTYSLNL--LSLHNNIPVLLDLKSIIKHYVDFQINVII 367 Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLTENQVDA 430 +RS F I++R IL+ L A NID I+ I+RN ++ K + F E Q A Sbjct: 368 KRSIFEKDKIEKRFHILEALDTALDNIDAIVNILRNSPESNEAKMKLTEAFGFDEEQNKA 427 Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDS---LLNSGKQQWNQIACEIREVKEIFS 487 IL++RL+ L LE +I+ E+ + KE+ID L++ +Q N + ++ E+ E F Sbjct: 428 ILDMRLQRLVGLERGKIQQEMAQI---KERIDYLTLLISDETEQNNVLKNQLSEIAEKFG 484 Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS------ 541 + RRT + D + +I +++S+ G+IR + + Sbjct: 485 DN-----RRTETIDEGLMD--IEDEELIPDVKTMILLSDEGYIRRVDPEEFRVQKRGGRG 537 Query: 542 -ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLLSGRG 585 +++ D + IA D +L + GK + LP N L+G Sbjct: 538 VSVNSSNEDPIVIATMGKMRDWVLFFTNSGKVFRTKAYNIRQYSRTARGLPIVNFLNGLT 597 Query: 586 HGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS 645 G+ I ++ L + V + L ++ KG + S + GK + + Sbjct: 598 AGDKITAILPLRN--------VKEKMNYLTFITEKGMIKKTDISLFDNINKNGKIAINLK 649 Query: 646 SEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSRG----KGVRLQSYKDGGISDV 700 ++++ V TG D + V ++ K++ + + +SR K ++L D + V Sbjct: 650 EDDQLVTVFATTGEDTIFVANKSGKVIRIQENIVRPLSRTASGVKAIKLDE-NDVVVGAV 708 Query: 701 ICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752 F I E +T I S G S+ ++ D G R G G V ++G F S Sbjct: 709 TSFGI-ENITTISSKG-SFKKTNIDEYRISG-RNGKGIKVMNLNEKTGDFKS 757 >gi|90424083|ref|YP_532453.1| DNA gyrase subunit A [Rhodopseudomonas palustris BisB18] gi|90106097|gb|ABD88134.1| DNA gyrase subunit A [Rhodopseudomonas palustris BisB18] Length = 927 Score = 407 bits (1046), Expect = e-111, Method: Compositional matrix adjust. Identities = 244/631 (38%), Positives = 359/631 (56%), Gaps = 55/631 (8%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 +++ VS+ ++ YL YA+S I RA+PD RDG KPVHRRI++AM E G ++ ++KS Sbjct: 17 DIRPVSILDEMKRSYLDYAMSVIVARALPDARDGLKPVHRRILYAMYENGFEWNKPYRKS 76 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 AR VG+VIGK HPHGDQSVYD++VR+AQ F R PLI GQGNFG++DGDSAAA RYTE+R Sbjct: 77 ARTVGDVIGKYHPHGDQSVYDAMVRMAQDFSMRVPLIDGQGNFGSVDGDSAAAMRYTESR 136 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 +T++A+L+L +D+D VD++D Y+ EP V P+KFPNLL NG GIAVGMAT+IP HN Sbjct: 137 LTKIAQLLLDDLDKDTVDYQDNYDGSFREPRVLPAKFPNLLVNGAGGIAVGMATNIPPHN 196 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 + E+ +A +ALID+P +SI+ L + + GPDFPTGGII+ R I +Y GRG +R + Sbjct: 197 LGEVIDACVALIDDPALSIDDLTKIVPGPDFPTGGIIL-GRAGIRLAYHTGRGSIVMRGK 255 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315 +E + I+++EIPYQV K+ ++E+IAEL+ K+I + D+RDES D V+ Sbjct: 256 VAIEPTRKDREAIIISEIPYQVNKATMVERIAELVREKKIEGISDLRDESDRDGFRVVIE 315 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 R PD+++ ++ + ++T F NM L GR PQ+M L +L+ ++A R +V+ RR Sbjct: 316 LRRDAVPDVVLNQLYRFTPLQTNFGANMVALDAGR-PQLMNLKDLLRLFVAFREQVVTRR 374 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR------------ 420 + F + R +L GL IA NIDEII +IR P + +++R Sbjct: 375 TKFLLNKARDRAHVLVGLAIAVANIDEIIRVIRTSPDPATARDTLMARDWEAKDVAAMIT 434 Query: 421 --------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466 L+ Q AIL+LRL L L +I ELD L E +L Sbjct: 435 LIDDPRHRLNADGTARLSFEQAKAILDLRLARLTALGREEISEELDKLAIEIADYLEILR 494 Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526 S + I E+ VK F+ R+TT E + + +I++E + V +S+ Sbjct: 495 SRARVQTIIKEELAAVKAEFATP-----RKTTIIE---QEGEVEDEDLIQREDMVVTVSH 546 Query: 527 RGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---- 574 G++ R+ + S + +E D + A T +L S+ G+ Y Sbjct: 547 AGYVKRVPLSTYRAQRRGGKGRSGMQTREEDFVSRLFVASTHTPVLFFSSRGQVYKEKVW 606 Query: 575 -LPAGNLLSGRGHGEAIQLLIDLNHNQDIVT 604 LP + G G+A+ ++ L + I T Sbjct: 607 RLP---IAPPNGRGKALINILPLEQGERITT 634 >gi|322373141|ref|ZP_08047677.1| DNA gyrase, A subunit [Streptococcus sp. C150] gi|321278183|gb|EFX55252.1| DNA gyrase, A subunit [Streptococcus sp. C150] Length = 823 Score = 407 bits (1046), Expect = e-111, Method: Compositional matrix adjust. Identities = 253/713 (35%), Positives = 403/713 (56%), Gaps = 47/713 (6%) Query: 12 LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71 + + N+ V L ++ ++ YA+S I RA+PD+RDG KPV RRI++ M+E+G+ Sbjct: 1 MQDNNLIDVKLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVQRRILYGMNELGVTPDKP 60 Query: 72 FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131 KKSARI G+V+GK HPHGD S+Y+++VR+AQ + RY L+ G GNFG++DGD AAA RY Sbjct: 61 HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRY 120 Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191 TEARM++ A +L+ ++++ VDF+D Y+ + EP+V PS+ PNLL NG +GIAVGMAT+I Sbjct: 121 TEARMSKFALEMLRDLNKNTVDFQDNYDGSEREPIVLPSRIPNLLVNGATGIAVGMATNI 180 Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251 P HN+ E +A ++DNPE++ +L+E + GPDFPTGG+++ + I +Y G+G Sbjct: 181 PPHNLSETIDAVKLMMDNPEVTTRELMEVLPGPDFPTGGLVM-GKTGIHRAYETGKGSIV 239 Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVR 310 +R+R +E G IVVTE PY V K+++ E I L KR+ + +RDES+ E VR Sbjct: 240 LRSRTEIETTKSGRERIVVTEFPYMVNKTKVHEHIVRLAQEKRVEGITAVRDESSREGVR 299 Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370 V+ + R ++++ ++F L+ ++T F NM + G VP+++ L IL +++AH++E Sbjct: 300 FVIEVR-RDASANVILNNLFKLTQLQTNFSFNMLAIEKG-VPKILSLRQILADYIAHQKE 357 Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLTENQ 427 V+ RR+ F + R IL+GLLIA ++DE+IAIIRN + + + +++RF LTE Q Sbjct: 358 VVVRRTQFDKDKAEARAHILEGLLIALDHLDEVIAIIRNSQTDSEAQAELMARFELTERQ 417 Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487 AIL++RLR L LE +I++E ++LLA + +L + I E+ E K F Sbjct: 418 SQAILDMRLRRLTGLERDKIQNEYNDLLALIADLADILAKPGRVIAIIKEELDESKRKFG 477 Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVD 539 D R EV + + +IE+E + + +SN+G+I RS K Sbjct: 478 ---DARRTELMVGEVV----SLEDEDLIEEEDVVITLSNKGYIKRLAQDEFRSQKRGGRG 530 Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLLSGR 584 + + D ++ + T D + ++ G+ Y LP NLL Sbjct: 531 VQGTGVNDDDFVRDIVSTSTHDHLYFMTNKGRVYRLKGYEIPEYGRTAKGLPIVNLLK-L 589 Query: 585 GHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV 644 GE IQ +I+ ++ L+ V+ +G +E+E + G LK+ Sbjct: 590 DEGETIQTVINAKSDE-------ASENNHLVFVTRQGLVKRTKEAEFKNIRQNGLIALKL 642 Query: 645 SSEEKMKLVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSR-GKGVRLQSYKDG 695 +++ V TG+ ++G + F + I MSR GV+ + +DG Sbjct: 643 REGDELINVFLTTGNEEIIIGTKFGYSVRFKENTIRSMSRMAAGVKGVTLRDG 695 >gi|331270700|ref|YP_004397192.1| DNA gyrase subunit A [Clostridium botulinum BKT015925] gi|329127250|gb|AEB77195.1| DNA gyrase, A subunit [Clostridium botulinum BKT015925] Length = 849 Score = 407 bits (1046), Expect = e-111, Method: Compositional matrix adjust. Identities = 231/574 (40%), Positives = 349/574 (60%), Gaps = 23/574 (4%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 N+ + + ++ Y+ YA+S I RA+PD+RDG KPVHRRI+++M E+GL ++KS Sbjct: 6 NIVPIDISKEMQRSYIDYAMSVIVGRALPDVRDGLKPVHRRILYSMHELGLTPEKGYRKS 65 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 ARIVG+V+GK HPHGD +VYD+LVR+AQ F RY L+ G GNFG++DGD AAA RYTEA+ Sbjct: 66 ARIVGDVLGKYHPHGDTAVYDALVRMAQDFSIRYTLVDGHGNFGSVDGDGAAAMRYTEAK 125 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 MT+V +L+ ++++ VDF ++ E+ EP V PS+FPNLL NG+SGIAVGMAT+IP HN Sbjct: 126 MTKVTLELLRDINKNTVDFVPNFDGEEKEPSVLPSRFPNLLVNGSSGIAVGMATNIPPHN 185 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 + E+ IDNP+IS+ +L+ I GPDFPT GIIV + I ++Y GRG +R++ Sbjct: 186 LTEVINGINKYIDNPDISVAELMTEIKGPDFPTAGIIV-GKSGIRKAYETGRGKVILRSK 244 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLF 314 +EE +G IVVTEIPYQV K+RLIE IA L+ KRI + D+RDES E +RIV+ Sbjct: 245 AEIEE-EKGRSRIVVTEIPYQVNKARLIESIANLVKDKRINGISDLRDESDREGMRIVIE 303 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K R + ++++ ++ + M+ F + M L G P+V+ L +LK ++ + EV+ R Sbjct: 304 LK-RDANANVVLNQLYKHTKMQDSFGIIMLALVNGE-PKVLSLKEVLKHYIKFQEEVITR 361 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAI 431 R+ F + R IL+GL IA +IDE+I +IR + + ++SRF L+E Q AI Sbjct: 362 RTQFDLDKALARAHILEGLRIALDHIDEVIKLIRGSKTTGEAREGLMSRFGLSEKQATAI 421 Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491 L+++L+ L LE +I+ E L+ + +L+ I E+ E+K + Sbjct: 422 LDMKLQRLTGLEREKIEEEYAKLMENIKYFRQILSDKSLLLKIIKDELNEIKVKYGDE-- 479 Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSVDLSAL 543 RR+ + D + +IE++ + + +++ G+I+ L K + A+ Sbjct: 480 ---RRSEIIQGEGNDIDI--EDLIEEKDVVITLTHAGYIKRLPVETYSAQKRGGRGIQAM 534 Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPA 577 KE D ++ + A T D IL + G+ Y L A Sbjct: 535 TTKEDDFVEHIITASTHDNILFFTNLGRVYQLKA 568 >gi|322516558|ref|ZP_08069474.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus vestibularis ATCC 49124] gi|322124946|gb|EFX96366.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus vestibularis ATCC 49124] Length = 822 Score = 407 bits (1046), Expect = e-111, Method: Compositional matrix adjust. Identities = 252/713 (35%), Positives = 407/713 (57%), Gaps = 47/713 (6%) Query: 12 LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71 + + N+ V+L ++ ++ YA+S I RA+PD+RDG KPV RRI++ M+E+G+ Sbjct: 1 MQDNNLIDVNLTSEMKTSFIDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVTPDKP 60 Query: 72 FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131 KKSARI G+V+GK HPHGD S+Y+++VR+AQ + RY L+ G GNFG++DGD AAA RY Sbjct: 61 HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRY 120 Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191 TEARM+++A +L+ ++++ VDF+D Y+ + EP+V PS+ PNLL NG +GIAVGMAT+I Sbjct: 121 TEARMSKIALEMLRDLNKNTVDFQDNYDGSEREPIVLPSRIPNLLVNGATGIAVGMATNI 180 Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251 P HN+ E +A ++DNPE++ +L+E + GPDFPTGG+++ + I +Y G+G Sbjct: 181 PPHNLAETIDAVKLMMDNPEVTTRELMEVLPGPDFPTGGLVM-GKSGIHRAYETGKGSIV 239 Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVR 310 +R+R +E G IVVTE PY V K+++ E I L KRI + +RDES+ E VR Sbjct: 240 LRSRTEIETTKSGRERIVVTEFPYMVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGVR 299 Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370 ++ + R ++++ ++F L+ ++T F NM + G VP+++ L IL +++AH++E Sbjct: 300 FIIEVR-RDASANVILNNLFKLTQLQTNFSFNMLAIEKG-VPKILSLRQILADYIAHQQE 357 Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLTENQ 427 V+ RR+ F + R IL+GLLIA ++DE+I IIRN + + + +++RF LTE Q Sbjct: 358 VVVRRTQFDKDKAEARAHILEGLLIALDHLDEVITIIRNSQTDAEAQAELMARFELTERQ 417 Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487 AIL++RLR L LE +I++E ++LLA + +L ++ I E+ E K F+ Sbjct: 418 SQAILDMRLRRLTGLERDKIQNEYNDLLALIADLADILAKPERVIAIIKEELDESKRKFA 477 Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVD 539 D R EV + + +IE+E + + +S++G+I RS K Sbjct: 478 ---DARRTELMVGEVV----SLEDEDLIEEEDVVITLSSKGYIKRLAQDEFRSQKRGGRG 530 Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLLSGR 584 + + D ++ + T D + ++ G+ Y LP NLL Sbjct: 531 VQGTGVNDDDFVRDIVSTSTHDHLYFMTNKGRVYRLKGYEIPEYGRTAKGLPIVNLLK-L 589 Query: 585 GHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV 644 GE+IQ +I+ ++ L+ V+ +G +E+E + G LK+ Sbjct: 590 DEGESIQTVINAKSDEG-------SDNNHLVFVTRQGLVKRTKEAEFKNIRQNGLIALKL 642 Query: 645 SSEEKMKLVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSR-GKGVRLQSYKDG 695 +++ V TG+ ++G + F D I MSR GV+ + +DG Sbjct: 643 REGDELINVFLTTGNEEIIIGTKFGYSVRFKEDTIRSMSRMAAGVKGVTLRDG 695 >gi|332878574|ref|ZP_08446294.1| DNA gyrase, A subunit [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332683475|gb|EGJ56352.1| DNA gyrase, A subunit [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 837 Score = 407 bits (1046), Expect = e-111, Method: Compositional matrix adjust. Identities = 238/633 (37%), Positives = 376/633 (59%), Gaps = 42/633 (6%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 E + V + ++ Y+ Y++S I RA+PD+RDG KPVHRR+++ M +MG+ A+KK Sbjct: 5 EKLIPVDISDEMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMYDMGVLSSRAYKK 64 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 SA IVGEV+GK HPHGD +VYD++VR+AQ + RY L+ GQGNFG++ GDS AA RYTEA Sbjct: 65 SAAIVGEVLGKYHPHGDTAVYDTMVRMAQYWSLRYMLVDGQGNFGSMGGDSPAAMRYTEA 124 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 RM + +E +L +D++ VD + TY++ EP V P++ PNLL NG++GIAVGMAT++ H Sbjct: 125 RMRKFSEDMLSDIDKETVDHQLTYDDSREEPTVLPTRIPNLLVNGSAGIAVGMATNMAPH 184 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 N+ E+ + +A IDN +I I++L++YI PDFPTGGII E + E+++ GRG VRA Sbjct: 185 NLSEVIDGTIAYIDNNDIEIDELIKYIKAPDFPTGGIIY-GYEGVKEAFKTGRGRVIVRA 243 Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE-DVRIVL 313 + +EV +G CIVVTE+PYQV S L++K ++L+ ++ + D+RDESA +RIV Sbjct: 244 KTEFQEV-KGKECIVVTEVPYQVDTSVLLKKTSDLVKEGKLEGITDVRDESARGKIRIVY 302 Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373 F K R P++++ ++F ++++T F +N L GR P+++ L ++ ++ HR EV++ Sbjct: 303 FLK-RDAVPNVVLNNLFKHTELQTSFSVNNIALVKGR-PELLNLKDLIYHFVEHRHEVVY 360 Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEI---IAIIRNEDKPKPVMVSRFSLTENQVDA 430 RR+ F ++ R+ IL+G + D + I IIR DKPK +++ F LT+ Q +A Sbjct: 361 RRTDFELRKAKERIHILEGFMKVMATEDTMGKAIEIIRFHDKPKEDLIAEFDLTDVQAEA 420 Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490 IL L LR + K Q K E + LAE ++ +L +++ I E+ E+KE + Sbjct: 421 ILALALRRINKALILQTKEEYEQKLAEIRDLEDILARKERRVEIIKQELLEIKEKY---- 476 Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR-----SLKSHS---VDLSA 542 G R + E + + + + MI + + + IS+ G+I+ K+ S V A Sbjct: 477 --GDERRSVIEYAGGEFSV--EDMIPDDKMVITISHAGYIKRTPLSEYKTQSRGGVGQKA 532 Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKA-----YTLPAGNLLSGRGHGEAIQLLIDLN 597 ++ D L+ + +L + GK Y +P G S G A+Q LI++ Sbjct: 533 STTRDQDFLEHLFVSSNHQYLLFFTQKGKCFWMRVYEIPEG---SKTAKGRAVQNLINIE 589 Query: 598 HNQDIVTAFV---------YDSTCKLLVVSSKG 621 + D + AFV Y S+ L++ + +G Sbjct: 590 QD-DKIKAFVSVQNLKDEDYISSNYLIMATKQG 621 >gi|203284343|ref|YP_002222083.1| DNA gyrase, subunit A [Borrelia duttonii Ly] gi|201083786|gb|ACH93377.1| DNA gyrase, subunit A [Borrelia duttonii Ly] Length = 815 Score = 407 bits (1046), Expect = e-111, Method: Compositional matrix adjust. Identities = 233/609 (38%), Positives = 372/609 (61%), Gaps = 29/609 (4%) Query: 15 ENVKAVSLRFALEER----YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70 EN K L +E+ YL YA+S I RA+PD+RDG KPVHRRI+++M EMGL Sbjct: 9 ENNKEQVLNIKIEDEVRTSYLNYAMSVIVSRALPDVRDGLKPVHRRILYSMHEMGLKSDK 68 Query: 71 AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130 +FKK+ RIVG+V+GK HPHGDQS+Y++LVRLAQ F RYP++SGQGNFG+IDGD AA R Sbjct: 69 SFKKAGRIVGDVLGKYHPHGDQSIYEALVRLAQDFSLRYPIVSGQGNFGSIDGDPPAAMR 128 Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190 YTEARM ++AE ++ +D+ V+F+ Y++ EP V P+ FP LL NG+SGIAVGMAT+ Sbjct: 129 YTEARMAKIAEELVIDIDKQTVNFKPNYDDSLLEPEVLPAAFPFLLVNGSSGIAVGMATN 188 Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250 + HN++E+C+A + ++++ ++SI L+ I GPDFPT I+ + E+++++Y G+G Sbjct: 189 MAPHNLREVCDAIIYMLEHDDVSIYDLIAIIKGPDFPTYAEIIYN-ENLIKAYTTGKGSV 247 Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDV 309 +RAR+ +EE + I++T+IPY V KS L+ KIA LI +++ + DIRDES E + Sbjct: 248 VIRARYHIEEKSEDNISIIITQIPYAVNKSSLLMKIALLIKEEKLEGVSDIRDESDREGI 307 Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369 RIVL K + DP ++M ++ +++ F +N N+ + +P+ + L ++ E++ HR+ Sbjct: 308 RIVLEIK-KGFDPHVVMNLLYEYTELRRNFSIN-NLALVNGIPKQLNLRELISEFIEHRK 365 Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTEN 426 +L RR F ++ + IL+GL IA NID +I IIR + ++ F L+E Sbjct: 366 NILRRRVEFDLKRAQEKAHILEGLNIALRNIDRVIEIIRFSRLVKDARECIMREFQLSEI 425 Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486 Q ++IL+++L+ L LE +I+ + +LA + + +L S + N IRE EI Sbjct: 426 QANSILDMKLQKLTSLEVAKIEEDFQVVLALIKDYEDILISPSRIVNM----IRE--EII 479 Query: 487 SKSTDLG-RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL-- 543 + S G RRT K ++ M ++E + V+++ +G+I+ + L + Sbjct: 480 NLSLKFGDDRRTKIIYDEEVLKTSMSDLM-QRENVIVILTKQGFIKRVLQDEYKLQGIGG 538 Query: 544 ------HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLID 595 ++ D + +AL +T D +L++S +GK Y + A + S G+ I+ LI+ Sbjct: 539 KGLGSFDLQDSDQVNVALCVNTHDFLLMISNEGKLYVINAYGIKDSSRTSRGQNIRELIN 598 Query: 596 LNHNQDIVT 604 L ++I+ Sbjct: 599 LGEKEEILA 607 >gi|110834612|ref|YP_693471.1| DNA gyrase subunit A [Alcanivorax borkumensis SK2] gi|110647723|emb|CAL17199.1| DNA gyrase, subunit A [Alcanivorax borkumensis SK2] Length = 920 Score = 407 bits (1045), Expect = e-111, Method: Compositional matrix adjust. Identities = 250/646 (38%), Positives = 375/646 (58%), Gaps = 74/646 (11%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 V V++ L++ YL YA+S I RA+PD+RDG KPVHRR++ AM E+ D+ A+KKSA Sbjct: 8 VTPVNIEDELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNKAYKKSA 67 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG+IDGDSAAA RYTE RM Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVRM 127 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 ++A +L +D++ VDF D Y+ + P V P++ PNLL NG+SGIAVGMAT+IP HN+ Sbjct: 128 AKIAHELLADLDKETVDFVDNYDGTERIPDVMPTRVPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ + LALID+ ++ + L+EYI GPDFPT GII R IV++YR GRG +RAR Sbjct: 188 GEVVDGCLALIDDDSLTPDDLMEYIKGPDFPTAGII-NGRAGIVQAYRTGRGRVYMRARA 246 Query: 257 CVEEVGR-GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLF 314 +E + G I+VTEIPYQV K+RLIEKIAEL+ K+I + ++RDES E +RIV+ Sbjct: 247 EIEATDKSGKEAIIVTEIPYQVNKARLIEKIAELVKDKKIEGITELRDESDKEGMRIVIE 306 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 + R + ++++ +++ + ME+ F +N L G+ P+++ L +L ++ HRREV+ R Sbjct: 307 LR-RGENAEVVLNNLYQQTQMESVFGINTVALVDGQ-PKILNLRELLDAFIRHRREVVTR 364 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED--------------KPKPV--MV 418 R+ + ++ + +L+GL +A NID +I +I+ KP V M+ Sbjct: 365 RTVYELRKAREKAHLLEGLAVALSNIDPVIELIKASPSGAEAKAKLLDKGWKPGDVLQML 424 Query: 419 SR----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLA 456 R + L+ Q AIL+LRL+ L LE ++ ++ LL Sbjct: 425 ERAGGENAARPDGLDEQYGLVDGLYHLSPEQAQAILDLRLQKLTGLEREKLINDYQELLE 484 Query: 457 EKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE 516 + ++ +L + ++ I E++ V+E ++ RR+ SR D + + +I Sbjct: 485 QIAELLKILGNPERLMEVIREELQAVREEYADE-----RRSEIV-ASRQDFS--MEDLIA 536 Query: 517 KEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568 +E + V +SN G+ R+ K SA K+ D ++ L A T D +LL + Sbjct: 537 EETVVVTLSNGGYAKMQPIDTYRAQKRGGRGKSAGQLKDQDYVEHLLVAGTHDTLLLFTN 596 Query: 569 DGK-----AYTLPAG----------NLLSGRGHGEAIQLLIDLNHN 599 GK + LP G NLL G E I ++ L+ + Sbjct: 597 AGKVFWLRTFELPQGGRASRGKPIVNLLPALGADERITAILRLDAD 642 >gi|300772983|ref|ZP_07082852.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Sphingobacterium spiritivorum ATCC 33861] gi|300759154|gb|EFK55981.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Sphingobacterium spiritivorum ATCC 33861] Length = 848 Score = 407 bits (1045), Expect = e-111, Method: Compositional matrix adjust. Identities = 235/644 (36%), Positives = 379/644 (58%), Gaps = 39/644 (6%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 +++ ++ Y+ Y++S I RA+PD RDG KPVHRR+++ M ++G+ G +KKSARIV Sbjct: 20 INIEDQMKAAYIDYSMSVIVSRALPDARDGLKPVHRRVLYGMLDLGVTSGKPYKKSARIV 79 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+V+GK HPHGD SVYD++VRLAQ + RYPL+ GQGN+G+IDGD AA RYTEAR+ + Sbjct: 80 GDVLGKYHPHGDSSVYDAMVRLAQDWSMRYPLVDGQGNYGSIDGDPPAAMRYTEARLKKF 139 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 AE +L +++D VDF+ +++ EP V P++ PNLL NG SGIAVGMAT++ HN+ E+ Sbjct: 140 AEEMLSDINKDTVDFKLNFDDSLEEPTVLPTRIPNLLVNGASGIAVGMATNMAPHNLSEV 199 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 + +A IDN EI I +L++YI GPDFPTGGII + E+ GRG +RA+ +E Sbjct: 200 VDGTVAFIDNREIEISELMQYIKGPDFPTGGIIY-GYNGVKEACETGRGRVVMRAKAEIE 258 Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319 G CI+VTEIPYQV K+ +I++ AEL+ K+I + +IRDES + V++ R Sbjct: 259 TTKSGRECIIVTEIPYQVNKADMIKRTAELVNEKKIEGISEIRDESDREGFRVVYDIKRD 318 Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379 + ++++ +++ + ++T F +N L GR P +M L ++ E++ HR EV+ RR+ F Sbjct: 319 ANANVVLNNLYKYTALQTSFSVNNIALVKGR-PMMMNLKDMIHEFVEHRHEVVIRRTKFE 377 Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVDAILNLRL 436 + ++R IL+G LIA ++DE+I +IR + P+ ++ RF+L++ Q AIL++ L Sbjct: 378 LAEAEKRAHILEGYLIALDHLDEVIKLIRASETPEDARTGLMERFALSDLQARAILDMTL 437 Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496 R L LE +IK E + L+ E + +L+ + I E+ E+K+ + RR Sbjct: 438 RRLTGLERDKIKEEYNELMKTIEYLKEVLSDEGLRMKIIKDELLEIKDKYGDE-----RR 492 Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS--------ALHFKEG 548 + V A+ ++ I+ E I + IS+ +++ + +E Sbjct: 493 SII--VHSAEDMRMED-FIDDEEIVITISHNSYVKRTPLSEYKRQGRGGRGSIGTNTREE 549 Query: 549 DSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIV 603 D + + A + +L + G +A+ +P G+ S G A+Q +I++ ++ I Sbjct: 550 DFTEHIITASAHNYMLFFTEAGRCFWLRAFEIPEGSRTS---RGRALQNIINIPKDEKI- 605 Query: 604 TAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE 647 A++ V++ K ++ E + II T+KG T K S E Sbjct: 606 KAYIK-------VINLKDQEYL-ENNFIIMCTKKG-TIKKTSLE 640 >gi|110638083|ref|YP_678292.1| DNA gyrase subunit A [Cytophaga hutchinsonii ATCC 33406] gi|110280764|gb|ABG58950.1| DNA gyrase subunit A [Cytophaga hutchinsonii ATCC 33406] Length = 865 Score = 407 bits (1045), Expect = e-111, Method: Compositional matrix adjust. Identities = 222/597 (37%), Positives = 355/597 (59%), Gaps = 29/597 (4%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 N+ +++ + Y+ Y++S I RA+PD+RDG KPVHRR+++ M ++G+ + A+KKS Sbjct: 11 NIIPINIEDEMRGAYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMEDLGVHYNKAYKKS 70 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 ARIVGEV+GK HPHGD SVYD++VR+AQ + RYP++ GQGNFG++DGDS AA RYTEAR Sbjct: 71 ARIVGEVLGKYHPHGDSSVYDTMVRMAQEWSLRYPMVDGQGNFGSVDGDSPAAMRYTEAR 130 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 + ++AE +L +++D VDF+ +++ EP V PSK PNLL NG+SGIAVGMAT++ HN Sbjct: 131 LKRIAEEMLSDINKDTVDFQPNFDDSLQEPSVLPSKVPNLLINGSSGIAVGMATNMAPHN 190 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 + E+ + +A IDN +I+I +L+ ++ GPDFPTG I + I ++ GRG +R+R Sbjct: 191 ITEVIDGVIAFIDNNDITIPELMVHVKGPDFPTGATIY-GYQGIRSAFETGRGRIVLRSR 249 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315 +E G I+V+EIPY V K+ +IEKIA ++ K+I + DIRDES + ++F Sbjct: 250 STIETTSTGKEQIIVSEIPYMVNKAAMIEKIAAMVNEKKIEGISDIRDESDREGMRIVFD 309 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 R ++++ ++F S +++ F +N L GR P + L ++ ++ HR EV+ RR Sbjct: 310 LKRDAIANVVLNNLFKYSQLQSSFSVNNVCLVKGR-PMTLNLKEMIMYFVEHRHEVVTRR 368 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVDAIL 432 + F + ++R IL+G LIA ++DE+I +IR P+ +++ F ++E Q A+L Sbjct: 369 TQFELNEAEKRAHILQGYLIALDHLDEVIKLIRESRDPEAARIGLMTNFGMSEIQAKAVL 428 Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492 +LRL+ L +E +I E + ++A ++ +L S + + I E+ E+KE + Sbjct: 429 DLRLQRLTGMERDKIIKEYEEIMALINRLKEILASKELRMEIIKQELDEMKERYGD---- 484 Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALH 544 +RR+ S D ++ MI +E + + IS+ G+I R+ V Sbjct: 485 -KRRSDIVHAS--DDINIED-MIPEEQMVITISHEGYIKRTALSEYRTQGRGGVGSKGAG 540 Query: 545 FKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDL 596 KE D + A T + +L + G K Y +P G + G AIQ +I + Sbjct: 541 SKESDFTEHLFVASTHNYLLFFTEYGKVFWLKVYEIPEGGKTT---KGRAIQNVIQI 594 >gi|157375440|ref|YP_001474040.1| DNA topoisomerase (ATP-hydrolyzing) [Shewanella sediminis HAW-EB3] gi|157317814|gb|ABV36912.1| DNA topoisomerase (ATP-hydrolyzing) [Shewanella sediminis HAW-EB3] Length = 904 Score = 407 bits (1045), Expect = e-111, Method: Compositional matrix adjust. Identities = 243/606 (40%), Positives = 353/606 (58%), Gaps = 57/606 (9%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 ++ +++ L+ YL YA+S I RA+PD+RDG KPVHRR++ AMSE+ D+ +KKS Sbjct: 7 SITPINIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELKNDWNKPYKKS 66 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 AR+VG+VIGK HPHGD +VYD++VRLAQPF RY L+ GQGNFG++DGD+AAA RYTE R Sbjct: 67 ARVVGDVIGKYHPHGDTAVYDTIVRLAQPFSMRYTLVDGQGNFGSVDGDAAAAMRYTEIR 126 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 M +VA +L ++++ VDF Y+ + P V P++ P LL NG+SGIAVGMAT+IP HN Sbjct: 127 MDKVAHQLLADLEKETVDFVPNYDGTEFIPSVLPTRIPTLLVNGSSGIAVGMATNIPPHN 186 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 + E+ LALI+NP+++I +L+EYI GPDFPT II R+ I+++Y GRG +RA+ Sbjct: 187 INEVVSGCLALIENPDLTINELMEYIPGPDFPTAAII-NGRKGIIDAYHTGRGRAVMRAK 245 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314 VE G I+V EIPYQV K+RLIEKIAEL+ K+I + +RDES +D +RIV+ Sbjct: 246 ADVETEDNGRERIIVHEIPYQVNKARLIEKIAELVKDKKIEGISGLRDESDKDGMRIVVE 305 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K R ++++ +++ + M+ F +NM L+ G+ P++ L +L+ ++ HRREV+ R Sbjct: 306 IK-RGEVGEVVLNNLYAQTQMQCSFGINMVALTNGQ-PKLFNLKEMLECFILHRREVVTR 363 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV---------------- 418 R+ F ++ R IL+ L IA NID IIA+I+ P V Sbjct: 364 RTVFELRKARDRAHILESLAIALANIDPIIALIKASPTPAEAKVKLIAEGWELGHVQGML 423 Query: 419 ---------------------SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457 R+ LTE Q AIL+LRL L LE +I E + LL Sbjct: 424 EKAGDDAARPEWLEPEYGIRDGRYYLTEQQAQAILDLRLHKLTGLEHEKILKEYEELLEI 483 Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517 + +L S ++ I E++EV E F G R T + D + + +I + Sbjct: 484 IAALLYILRSPERLMEVITEELQEVLENF------GDERRTVINANEVDMSL--EDLINE 535 Query: 518 EPITVVISNRGWIR--SLKSHSVDL------SALHFKEGDSLKIALHAHTTDRILLLSTD 569 E + V +S+ G+ + +L + +A K+ D ++ L A+T D IL S Sbjct: 536 EDVVVTLSHLGYAKYQALTDYQAQRRGGKGKAATKVKDEDFVEKLLVANTHDTILCFSDF 595 Query: 570 GKAYTL 575 GK Y L Sbjct: 596 GKMYWL 601 >gi|311747258|ref|ZP_07721043.1| DNA gyrase, A subunit [Algoriphagus sp. PR1] gi|126578969|gb|EAZ83133.1| DNA gyrase, A subunit [Algoriphagus sp. PR1] Length = 852 Score = 407 bits (1045), Expect = e-111, Method: Compositional matrix adjust. Identities = 246/722 (34%), Positives = 407/722 (56%), Gaps = 48/722 (6%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 EN+ +++ + Y+ Y++S I RA+PD+RDG KPVHRRI+ M E+G+ KK Sbjct: 7 ENIIPINIEEEMRGAYIDYSMSVIVSRALPDVRDGMKPVHRRILFGMQELGVLHNKPHKK 66 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 SARIVGEV+GK HPHGD +VYD++VR+AQP+ RY L+ GQGNFG+IDGD+ AA RYTEA Sbjct: 67 SARIVGEVLGKYHPHGDSAVYDTMVRMAQPWSLRYQLVDGQGNFGSIDGDNPAAMRYTEA 126 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 R+ ++AE +L +++D VD++ +++ EPVV P+K P LL NG SGIAVGMAT++ H Sbjct: 127 RLKRIAEEMLVDINKDTVDYQFNFDDSLKEPVVLPAKVPALLLNGASGIAVGMATNMAPH 186 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 N+ E+ +A I+N EI+I +L+EY+I PDFPTGGII + ++ GRG +R Sbjct: 187 NLGEVISGIIAYIENREITIPELMEYVIAPDFPTGGIIY-GYNGVKAAFETGRGRIVMRG 245 Query: 255 RWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313 + +E + G IV+TEIPY V K+ ++EK A+LI K+I + IRDES ++ Sbjct: 246 KANIETKDGGNKEMIVITEIPYLVNKASMVEKTAQLINEKKIDGISAIRDESDRSGMRIV 305 Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373 + R P +++ +++ + ++T F +N L GR P + L ++ ++ HR EV+ Sbjct: 306 YELKRDAIPSVILNNLYKHTQLQTSFSVNNVALVKGR-PYTLNLKDLIVHYVDHRHEVVI 364 Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVDA 430 RR+ + ++ ++R IL+G LIA ++DE+I++IRN P+ ++ RF L+E Q A Sbjct: 365 RRTQYELKEAEKRAHILQGYLIALDHLDEVISLIRNSADPETARNGLIERFDLSEIQARA 424 Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490 IL++RL+ L +E +I E ++A E++ +L + ++ I E+ E+K+ ++ Sbjct: 425 ILDMRLQRLTGMEREKIIQEYKEIMALIEELKEILENEDKRMEIIKTELTEMKDRYADD- 483 Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSA 542 RRT E+ + + MI E + + +S++G++ R+ V Sbjct: 484 ----RRT---EIEHNAEDFSYEDMIPNEEVIITVSHQGYVKRTALTEYRTQGRGGVGSRG 536 Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDLN 597 + KE D + A T + +L+ + G KAY +P GN S G IQ LI++ Sbjct: 537 VSTKEDDFTEYLFTASTHNYLLIFTDQGKLFWLKAYAIPEGNKTS---KGRPIQNLINIQ 593 Query: 598 HNQDIVTAFV--------YDSTCKLLVVSSKGNAFIVEESEIIANTR---KGKTFLKVSS 646 + I + Y + L++V+ KG +++++ + +R G L + Sbjct: 594 SDDRIRSIIQVNDLNDADYINNHFLVMVTKKG---VIKKTTLEQYSRPRTNGIIALNIRE 650 Query: 647 EEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFK 704 ++++ V GD H+ + ++ + + F + M R GV+ + G D + Sbjct: 651 DDQLVNVKMTNGDQHIVIAAKSGRAIHFPETAVRPMGRTATGVKAITLT--GQDDFVIGM 708 Query: 705 IC 706 +C Sbjct: 709 VC 710 >gi|330877041|gb|EGH11190.1| DNA gyrase subunit A [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 928 Score = 407 bits (1045), Expect = e-111, Method: Compositional matrix adjust. Identities = 244/639 (38%), Positives = 371/639 (58%), Gaps = 59/639 (9%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 V++ L++ YL YA+S I RA+PD RDG KPVHRR++ AMSE+G D+ +KKSAR+V Sbjct: 11 VNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDWNKPYKKSARVV 70 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG++DGD+AAA RYTE RMT++ Sbjct: 71 GDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRYTEVRMTKL 130 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A +L + ++ VD+ Y+ + P V P++ PNLL NG+SGIAVGMAT+IP HN+ E+ Sbjct: 131 AHELLADLHKETVDWVPNYDGTEMIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHNLGEV 190 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 + LALIDNPE++I++L++YI GPDFPT II R I+E+YR GRG +RAR VE Sbjct: 191 IDGCLALIDNPELTIDELMQYIPGPDFPTAAII-NGRAGIIEAYRTGRGRIYMRARSIVE 249 Query: 260 EVGR--GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317 ++ + G IV+TE+PYQ+ K+RLIEKIAEL+ K++ + ++RDES +D V+ Sbjct: 250 DIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKLEGITELRDESDKDGMRVVIELR 309 Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377 R P++++ +++ + +++ F +N+ L GR P+++ L +L+ ++ HRREV+ RR+ Sbjct: 310 RGEVPEVVLNNLYAQTQLQSVFGINIVALIDGR-PRILNLKDLLEAFVRHRREVVTRRTV 368 Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV----------------MVSR- 420 F ++ R IL+G +A NID +IA+I+ P MV R Sbjct: 369 FELRKARERGHILEGQAVALSNIDPVIALIKASPTPAEAKEALIKTPWESSAVVEMVERA 428 Query: 421 --------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEK 460 + L+ Q AIL LRL L LE ++ E +LA+ + Sbjct: 429 GADSCRPENLDPQYGLREGKYFLSPEQAQAILELRLHRLTGLEHEKLLGEYQEILAQIGE 488 Query: 461 IDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI 520 + +LNS + I E+ ++ + + RRT + +R D TL + E+E + Sbjct: 489 LIRILNSATRLMEVIREELELIRAEYGDA-----RRTEILD-ARLD-LTLGDLITEEERV 541 Query: 521 TVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKA 572 V IS+ G+ ++ + SA K+ D + L A++ +L+ S+ GK Sbjct: 542 -VTISHGGYAKTQPLAVYQAQRRGGKGKSATGIKDEDYIAHLLVANSHTTLLMFSSKGKV 600 Query: 573 YTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609 Y L + S G + L+ L+ + I T D Sbjct: 601 YWLKTYEIPEASRAARGRPLVNLLPLSEGEYITTMLPVD 639 >gi|309388288|gb|ADO76168.1| DNA gyrase subunit A [Halanaerobium praevalens DSM 2228] Length = 864 Score = 407 bits (1045), Expect = e-111, Method: Compositional matrix adjust. Identities = 239/600 (39%), Positives = 366/600 (61%), Gaps = 25/600 (4%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 VK + + + YL Y++S I RA+PD+RDG KPVHRRI++A+ ++G+ KKSA Sbjct: 8 VKKIDIDQEMRTSYLDYSMSVIVGRALPDVRDGLKPVHRRILYALDDLGMTHKKPHKKSA 67 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 RIVGEV+GK HPHGD +VYD++VR+AQ F RY L+ G GNFG+IDGDSAAA RYTEARM Sbjct: 68 RIVGEVLGKYHPHGDTAVYDTMVRMAQDFSYRYMLVDGHGNFGSIDGDSAAAMRYTEARM 127 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 + +A ++ + ++ VDF ++E EP V P++FPNLL NG+SGIAVGM+TSIP HN+ Sbjct: 128 SPIASEMMTDIKKETVDFVPNFDESLEEPEVLPARFPNLLVNGSSGIAVGMSTSIPPHNL 187 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ + + LI+ PEI+ ++L+ I GPDFPTGG I+ R SI ++Y+ GRG VRA+ Sbjct: 188 GEVIDGVIKLINKPEINTKELMGTIKGPDFPTGGQIM-GRGSIYKAYKNGRGKLTVRAKT 246 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFP 315 VE++ I+V E+PYQV K+RLI+KIA+L+ +++ + DIRDES D +RIV+ Sbjct: 247 RVEDLSTSRKQIIVDELPYQVNKARLIKKIADLVKNEKLEAISDIRDESDRDGMRIVIEL 306 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 K R P +++ ++ S ++ F + M L + + P+V+ L IL+ +L H++EV+ RR Sbjct: 307 K-REATPKVVLNQLYKHSRLQVTFSVIMIAL-VDKEPKVLSLKQILEHYLEHQKEVVRRR 364 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVDAIL 432 + + + R IL+G IA NIDEI+ +I+N D+ ++ + L+E Q +AIL Sbjct: 365 TQYDLDKALDRAHILEGYKIALANIDEIVEMIKNADQVDTARINLMENYKLSETQANAIL 424 Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492 +RL+SL LE +I+SE +L + S+L S ++ I EI +K ++ Sbjct: 425 RMRLQSLTGLERDKIESEYTDLQEQITYYRSILASEEKLLEIIKEEILAIKAKYNDE--- 481 Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALH 544 RRT+ ++RA L+ + E++ I V ++N+G+I RS + + + Sbjct: 482 --RRTSI--MNRATDLELEDLIEEEQ-IVVTMTNQGYIKRMPLDLYRSQRRGGKGVIGIS 536 Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL-LSGR-GHGEAIQLLIDLNHNQDI 602 KE D ++ T + L + G+ Y L + +GR G AI L++L + I Sbjct: 537 TKEEDFVENIFTTTTHYKFLFFTNQGRVYRLKGYQIPETGRQARGTAIINLLELEEGEKI 596 >gi|167957372|ref|ZP_02544446.1| DNA gyrase subunit A [candidate division TM7 single-cell isolate TM7c] Length = 832 Score = 407 bits (1045), Expect = e-111, Method: Compositional matrix adjust. Identities = 259/716 (36%), Positives = 406/716 (56%), Gaps = 44/716 (6%) Query: 5 NISNSNTLVEE----NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60 NI L EE ++ ++ +E+ +L Y++S I +RA+PD+RDG KPV+RRI++A Sbjct: 8 NIVEPEILNEEPEVLGIENSTVESVMEDSFLKYSMSVIIDRALPDVRDGLKPVNRRILYA 67 Query: 61 MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120 M++ G A KSA+IVGEV+G HPHGD S+YD++V LAQP+ RY L+ GQGNFG+ Sbjct: 68 MNKNGWRAPHATVKSAKIVGEVMGNYHPHGDSSIYDAMVNLAQPWKMRYTLVEGQGNFGS 127 Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180 +DGD AA RYTEARM +V +L +D++ VDFRD ++ + EPVV PS PN+L NG Sbjct: 128 MDGDEPAASRYTEARMDKVGGELLADIDKETVDFRDNFDGTEKEPVVLPSAVPNILLNGQ 187 Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240 GIAVGMAT+IP HN+ E+ +AA+A IDNPEI++++LL +I GPDFPTG + + Sbjct: 188 MGIAVGMATNIPPHNLGEVIDAAVAQIDNPEITLDELLTHIKGPDFPTGAEVYGG-APMR 246 Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300 ++Y GRG +RA +EE G + I+VTE+PY + K ++K+ EL++AK+I + D Sbjct: 247 QAYETGRGSVTIRAVATIEERKNGRYSIIVTEVPYGMSKEGFVDKVRELVLAKKITHIAD 306 Query: 301 IRDESAE-DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359 RDESA VR+V+ K + P ++ ++ L+ ++T F N+ L G P+VM L Sbjct: 307 ARDESARGKVRVVVELKKDAY-PKKILNQLYKLTGLQTSFHYNVLALVNGIQPKVMGLKE 365 Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE-DKPKPVMV 418 IL E++ HR+ V+ RR+ F ++ R IL+GL IA +IDE+I IR D ++ Sbjct: 366 ILAEFIKHRQGVIRRRTEFELRKAKERAHILEGLKIALDHIDEVIKTIRESYDDADKRLM 425 Query: 419 SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE 478 RF L+E Q AIL ++LR L+ LE +I+ EL L +K++++L S ++ N + E Sbjct: 426 ERFGLSEIQAAAILAMQLRRLQGLERDKIEDELKQLHELIKKLEAILASEQEILNVVKTE 485 Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSH-- 536 + +K+ K D R + E+ K + ++ + E+E + ++ S R+L S Sbjct: 486 LLAMKD---KYGDERRSKIINHELG---KFSDEELIPEEESVILLTSENYIKRTLVSDYR 539 Query: 537 -----SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGH 586 + KE D + + A T D +L + G KAY +PA +L Sbjct: 540 RQNRGGKGKRGMTTKEEDVIDQVVQASTHDYLLFFTNMGRIFRLKAYEVPAASL---SAK 596 Query: 587 GEAIQLLIDLNHNQDIVTAFVYDSTCK----LLVVSSKGNAFIVEESEI--IANTR-KGK 639 G A L+ L + I ++ L + + KG V+++ + AN R G Sbjct: 597 GVAAVNLLQLQPEEKITAIIKHEKNANDKGYLFMATQKGT---VKKTPVKDYANVRTNGL 653 Query: 640 TFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSRG----KGVRLQ 690 +K+ ++++ + + +GD+ ++ + I F+ M R +GVRL+ Sbjct: 654 IAIKLDEGDELRWIKRTSGDNDVIISTSAGQAIRFNEKDTRPMGRSARGVRGVRLR 709 >gi|269967412|ref|ZP_06181472.1| DNA topoisomerase 4 subunit A [Vibrio alginolyticus 40B] gi|269828000|gb|EEZ82274.1| DNA topoisomerase 4 subunit A [Vibrio alginolyticus 40B] Length = 478 Score = 407 bits (1045), Expect = e-111, Method: Compositional matrix adjust. Identities = 207/475 (43%), Positives = 313/475 (65%), Gaps = 18/475 (3%) Query: 9 SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68 S + + V+ + +R E+ YL Y++ I +RA+P + DG KPV RRII+AMSE+GL Sbjct: 2 STEITYDGVEQLPMRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSA 61 Query: 69 GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAA 127 A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S A Sbjct: 62 SAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFA 121 Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187 A RYTEA++++ AE++L + + V+++ ++ EP + P++ P++L NG +GIAVGM Sbjct: 122 AMRYTEAKLSKFAEVLLGELGQGTVEWQPNFDGTMKEPQMLPARLPHILLNGVTGIAVGM 181 Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247 AT IP HNV+EI +A + LIDNP+ + +++Y+ GPD+PT I+ + I + YR GR Sbjct: 182 ATDIPPHNVREIADATIHLIDNPKAELPDVMQYVKGPDYPTEAEIISPQADIEKIYRNGR 241 Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307 G ++RA W E GS IV+T +P+QV ++L+E+IA + AK++P+++D+RDES Sbjct: 242 GSIKMRAVWHKE----GS-DIVITSLPHQVSGAKLLEQIANQMRAKKLPMVDDLRDESDH 296 Query: 308 D--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365 + RIV+ PK+ +D DLLM +F +D+E + +N+N++ + PQV L IL EW+ Sbjct: 297 ENPTRIVVVPKSNRVDCDLLMNHLFASTDLERSYRVNLNMIGLDNRPQVKGLVQILSEWI 356 Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTE 425 RR + RR R+ + R+ IL+GLL+AYLN+DE+I IIR ED PK V++ RF +T+ Sbjct: 357 EFRRTTVRRRLQHRLDKVMARLHILEGLLVAYLNLDEVIEIIRTEDDPKAVLMERFGITD 416 Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELD----------NLLAEKEKIDSLLNSGKQ 470 Q DAIL+ +LR L KLEE +I+ E D LL + ++++LL Q Sbjct: 417 IQADAILDTKLRHLAKLEEMKIRGEQDELEKEREKLEQLLGSERRLNTLLEKRNQ 471 >gi|332522461|ref|ZP_08398713.1| DNA gyrase, A subunit [Streptococcus porcinus str. Jelinkova 176] gi|332313725|gb|EGJ26710.1| DNA gyrase, A subunit [Streptococcus porcinus str. Jelinkova 176] Length = 836 Score = 407 bits (1045), Expect = e-111, Method: Compositional matrix adjust. Identities = 241/641 (37%), Positives = 378/641 (58%), Gaps = 41/641 (6%) Query: 12 LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71 + ++N+ V+L ++ ++ YA+S I RA+PD+RDG KPVHRRI++ M+E+G+ Sbjct: 1 MQDKNLIDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKP 60 Query: 72 FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131 KKSARI G+V+GK HPHGD S+Y+++VR+AQ + R+ L+ G GNFG++DGD AAA RY Sbjct: 61 HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRY 120 Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191 TEARM+++A +L+ ++++ VDF+D Y+ + EP+V P++FPNLL NG +GIAVGMAT+I Sbjct: 121 TEARMSKIALELLKDINKNTVDFQDNYDGSEREPLVLPARFPNLLVNGATGIAVGMATNI 180 Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251 P HN+ E +A ++++PE + L+E I GPDFPTG +++ R I +Y G+G Sbjct: 181 PPHNLGESIDAVKMVMEHPECTTRDLMEVIPGPDFPTGAMVM-GRSGIHRAYDTGKGSIV 239 Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVR 310 +R+R +E G IVVTE PY V K+++ E I L KRI + +RDES+ E VR Sbjct: 240 LRSRTEIEITKTGRERIVVTEFPYGVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGVR 299 Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370 V+ K R ++++ ++F L+ ++T F NM + G VP+++ L I+ +++H++E Sbjct: 300 FVIEVK-RDASANVILNNLFKLTSLQTNFSFNMLAIENG-VPKILTLRQIIDNYISHQKE 357 Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQ 427 V+ RR+ F + + R IL+GLL+A ++DE+IAIIRN + ++SRF L+E Q Sbjct: 358 VITRRTRFDKEKAEARAHILEGLLVALDHLDEVIAIIRNSQTDVIAQAELMSRFQLSERQ 417 Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQI-ACEIREVKEIF 486 AIL++RLR L LE +I+SE D+L+A + +L + ++I A I+E+ EI Sbjct: 418 SQAILDMRLRRLTGLERDKIQSEYDDLIALIADLADIL----AKPDRISAIIIQEMDEIK 473 Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSV 538 K D R EV + + +IE E + + +SN+G+I RS K Sbjct: 474 RKYADPRRTELMVGEVLSLE----DEDLIEVEDVLITLSNKGYIKRLAQDEFRSQKRGGR 529 Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLLSG 583 + + D +K + T D +L + G+ Y LP NLL Sbjct: 530 GVQGTGVNDDDFVKELVSTSTHDTLLFFTNKGRVYRLKAYEIPEYGRTAKGLPIVNLLK- 588 Query: 584 RGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAF 624 E IQ +I+ +DI F + +T + LV + + F Sbjct: 589 LDEEETIQTIINA-RKEDIDNKFFFFTTRQGLVKRTNASEF 628 >gi|27352960|dbj|BAC49961.1| DNA gyrase subunit A [Bradyrhizobium japonicum USDA 110] Length = 884 Score = 407 bits (1045), Expect = e-111, Method: Compositional matrix adjust. Identities = 250/702 (35%), Positives = 384/702 (54%), Gaps = 62/702 (8%) Query: 26 LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85 +++ YL YA+S I RA+PD RDG KPVHRRI+++M+E G + KSAR+VG+VIGK Sbjct: 1 MKKSYLDYAMSVIVARALPDARDGLKPVHRRILYSMNEQGHTPDKKYVKSARVVGDVIGK 60 Query: 86 LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145 HPHGDQS+YD++VR+AQ F R PLI GQGNFG++DGD AAYRYTEAR+T+ A +L Sbjct: 61 YHPHGDQSIYDAMVRMAQDFSMRVPLIDGQGNFGSVDGDPPAAYRYTEARLTKAALALLA 120 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 +D+D VDF+ Y+ ++EP V P+KFPNLL NG GIAVGMAT+IP HN+ E+ +A +A Sbjct: 121 DIDKDTVDFQPNYDNNETEPSVLPAKFPNLLVNGAGGIAVGMATNIPPHNLGEVIDACVA 180 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265 LIDNP ++I++L+ + GPDFPTGG+I+ R I +Y LGRG +R + +E + + Sbjct: 181 LIDNPALTIDELINIVPGPDFPTGGVIL-GRAGIRAAYHLGRGSIVMRGKVAIETIRKER 239 Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325 +++TEIPYQV K+ ++E+IAEL+ K+I + D+RDES D V+ R D++ Sbjct: 240 EALIITEIPYQVNKATMVERIAELVKEKKIEGIGDLRDESDRDGYRVVIELKRDAVADVV 299 Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385 + ++ + ++T F +NM L GR P++M L +L ++ R V+ RR+ F + Sbjct: 300 LNQLYRFTPLQTSFGVNMVALDSGR-PRIMHLKDLLAIFVDFRERVVTRRTKFLLAKARD 358 Query: 386 RVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR---------------------- 420 R IL GL IA NIDE+I +IR P + ++SR Sbjct: 359 RAHILVGLAIAVANIDEMIRVIRTSPDPTTARDTLMSRDWPARDVEDMLTLIDDPRHRIS 418 Query: 421 ----FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476 L+ Q AIL+LRL+ L L +I+ ELD L E +L S ++ I Sbjct: 419 PDGTIRLSMEQARAILDLRLQRLTALGRDEIRDELDKLAGEIADYLDILRSRERVLGIIK 478 Query: 477 CEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI------ 530 E+ EVK F+ RRT E + + +I++E + V +S+ G++ Sbjct: 479 TELAEVKAEFATP-----RRTVIME---QEGEVEDEDLIQREDMVVTVSHAGYVKRVPLS 530 Query: 531 --RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT-----LPAGNLLSG 583 R+ + + + ++ D + A T +L S+ G+ Y LP + + Sbjct: 531 AYRAQRRGGKGRAGMQTRDEDFVSRLFVASTHTPVLFFSSRGQVYKEKVWRLP---MAAP 587 Query: 584 RGHGEAIQLLIDLNHNQDIVTAFVY---DST---CKLLVVSSKGNAFIVEESEIIANTRK 637 G+A+ ++ L + I T +ST ++ ++ GN + S+ + R Sbjct: 588 NARGKALINILPLEQGERITTIMPLPEDESTWGNLDVMFATTGGNVRRNKLSDFVDVRRS 647 Query: 638 GKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQI 678 G +K+ E + V T D V + G + + F + + Sbjct: 648 GIIAMKLDENEAIVDVQICTERDDVLLTGAGGQCIRFPVTDV 689 >gi|203287877|ref|YP_002222892.1| DNA gyrase, subunit A [Borrelia recurrentis A1] gi|201085097|gb|ACH94671.1| DNA gyrase, subunit A [Borrelia recurrentis A1] Length = 815 Score = 407 bits (1045), Expect = e-111, Method: Compositional matrix adjust. Identities = 235/609 (38%), Positives = 373/609 (61%), Gaps = 29/609 (4%) Query: 15 ENVKAVSLRFALEER----YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70 EN K L +E+ YL YA+S I RA+PD+RDG KPVHRRI+++M EMGL Sbjct: 9 ENNKEQVLNIKIEDEVRTSYLNYAMSVIVSRALPDVRDGLKPVHRRILYSMHEMGLKSDK 68 Query: 71 AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130 +FKK+ RIVG+V+GK HPHGDQS+Y++LVRLAQ F RYP++SGQGNFG+IDGD AA R Sbjct: 69 SFKKAGRIVGDVLGKYHPHGDQSIYEALVRLAQDFSLRYPIVSGQGNFGSIDGDPPAAMR 128 Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190 YTEARM ++AE ++ +D+ V+F+ Y++ EP V P+ FP LL NG+SGIAVGMAT+ Sbjct: 129 YTEARMAKIAEELVIDIDKQTVNFKPNYDDSLLEPEVLPAAFPFLLVNGSSGIAVGMATN 188 Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250 + HN++E+C+A + ++++ ++SI L+ I GPDFPT I+ + E+++++Y G+G Sbjct: 189 MAPHNLREVCDAIIYMLEHDDVSIYDLIAIIKGPDFPTYAEIIYN-ENLIKAYTTGKGSV 247 Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDV 309 +RAR+ +EE + I++T+IPY V KS L+ KIA LI +++ + DIRDES E + Sbjct: 248 VIRARYHIEEKSEDNISIIITQIPYAVNKSSLLMKIALLIKEEKLEGVSDIRDESDREGI 307 Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369 RIVL K + DP ++M ++ +++ F +N N+ + +P+ + L ++ E++ HR+ Sbjct: 308 RIVLEIK-KGFDPHVVMNLLYEYTELRRNFSIN-NLALVNGIPKQLNLRELISEFIEHRK 365 Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTEN 426 +L RR F ++ + IL+GL IA NID +I IIR + ++ F L+E Sbjct: 366 NILRRRVEFDLKRAQEKAHILEGLNIALRNIDRVIEIIRFSRLVKDARECIMREFQLSEI 425 Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486 Q ++IL+++L+ L LE +I+ + +LA + + +L S + N IRE EI Sbjct: 426 QANSILDMKLQKLTSLEVAKIEEDFQVVLALIKDYEDILISPSRIVNM----IRE--EII 479 Query: 487 SKSTDLG-RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL-- 543 + S G RRT K ++ M ++E + V+++ +G+I+ + L + Sbjct: 480 NLSLKFGDDRRTKIIYDEEVLKTSMSDLM-QRENVIVILTKQGFIKRVLQDEYKLQGIGG 538 Query: 544 ------HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPA-GNLLSGR-GHGEAIQLLID 595 ++ D + +AL +T D +L++S +GK Y + A G S R G+ I+ LI+ Sbjct: 539 KGLGSFDLQDSDQVNVALCVNTHDFLLMISNEGKLYVINAYGIKDSSRISRGQNIRELIN 598 Query: 596 LNHNQDIVT 604 L ++I+ Sbjct: 599 LGEKEEILA 607 >gi|291326671|ref|ZP_06125386.2| DNA gyrase, A subunit [Providencia rettgeri DSM 1131] gi|291313392|gb|EFE53845.1| DNA gyrase, A subunit [Providencia rettgeri DSM 1131] Length = 898 Score = 407 bits (1045), Expect = e-111, Method: Compositional matrix adjust. Identities = 254/668 (38%), Positives = 388/668 (58%), Gaps = 65/668 (9%) Query: 7 SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66 S S + + + V++ L+ YL YA+S I RA+PD+RDG KPVHRR+++AM+ +G Sbjct: 30 SGSMSEIAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGN 89 Query: 67 DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126 D+ +KKSARIVG+VIGK HPHGD +VY+++VRLAQPF RY L+ GQGNFG++DGDSA Sbjct: 90 DWNKPYKKSARIVGDVIGKYHPHGDSAVYETIVRLAQPFSMRYMLVDGQGNFGSVDGDSA 149 Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186 AA RYTE RM ++A +L ++++ VDF Y+ + P V P+K PNLL NG+SGIAVG Sbjct: 150 AAMRYTEIRMAKIAHELLADLEKETVDFVPNYDGTEQIPEVMPTKIPNLLVNGSSGIAVG 209 Query: 187 MATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLG 246 MAT+IP HN+ E+ LA I++ +ISIE L+E+I GPDFPT II R I+++YR G Sbjct: 210 MATNIPPHNLGEVINGCLAYIEDEDISIEGLMEHIPGPDFPTAAII-NGRRGIIDAYRTG 268 Query: 247 RGGFRVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305 RG +RA VE + G I+V+EIPYQV K+RLIEKIAEL+ KR+ + +RDES Sbjct: 269 RGKVYIRASAEVEVDEKNGRETIIVSEIPYQVNKARLIEKIAELVKDKRVEGISALRDES 328 Query: 306 AED-VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364 +D +RIV+ K ++ ++++ +++ L+ ++ F +NM L G+ P+++ L I+ + Sbjct: 329 DKDGMRIVIEVKRDAVG-EVVLNNLYSLTQLQVSFGINMVALHQGQ-PKILNLKDIIAAF 386 Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR- 420 + HRREV+ RR+ F ++ R IL+ L IA NID II +IR P K +++R Sbjct: 387 VRHRREVVTRRTIFELRKARDRAHILEALAIALANIDPIIELIRKAPTPAEAKAGLIARS 446 Query: 421 ---------------------------------FSLTENQVDAILNLRLRSLRKLEEYQI 447 + LTE Q AIL+LRL+ L LE ++ Sbjct: 447 WDLGNVAAMLERAGDDAARPEWLEPQFGVHEGQYFLTEQQAQAILDLRLQKLTGLEHEKL 506 Query: 448 KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADK 507 E +LL + E + +L S ++ I E+ +++ ++ RRT E + AD Sbjct: 507 LEEYRDLLVQIEALLFILRSPERLMEVIREELEIIRDTYNDP-----RRTEITE-NTADI 560 Query: 508 ATLQQAMIEKEPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHT 559 + +I +E + V +S++G+++ + + SA K+ D ++ L A+T Sbjct: 561 NI--EDLINQEDVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARTKDEDFIERLLVANT 618 Query: 560 TDRILLLSTDGKAYTLPAGNLL-SGRG-HGEAIQLLIDLNHNQDIVTAFV----YDSTCK 613 D IL S+ G+ Y + L + RG G I L+ L ++ I TA + Y+ Sbjct: 619 HDTILCFSSRGRLYWMKVYQLPEASRGARGRPIVNLLPLEQDERI-TAILPVREYEEGYN 677 Query: 614 LLVVSSKG 621 + + ++ G Sbjct: 678 VFMATASG 685 >gi|289579992|ref|YP_003478458.1| DNA gyrase subunit alpha [Natrialba magadii ATCC 43099] gi|289529545|gb|ADD03896.1| DNA gyrase, A subunit [Natrialba magadii ATCC 43099] Length = 846 Score = 406 bits (1044), Expect = e-111, Method: Compositional matrix adjust. Identities = 259/705 (36%), Positives = 405/705 (57%), Gaps = 52/705 (7%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 V+ V + +E+ Y+ YA+S I RA+PD+RDG KPVHRRI++AM EMG+ ++ +KS+ Sbjct: 16 VENVRIEDEMEQSYIDYAMSVIAGRALPDVRDGLKPVHRRILYAMHEMGVTSRSSHRKSS 75 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 IVGE +G HPHGD ++YD+LVR+AQ F RYPL+ GQGNFG++DGD AAA RYTEARM Sbjct: 76 SIVGETMGDYHPHGDSAIYDTLVRMAQDFSMRYPLVDGQGNFGSMDGDPAAAPRYTEARM 135 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 V+E +L+ +D+D VDF Y++ EP V PS FPNLL NG+SGIAVGM+T+IP HN+ Sbjct: 136 AAVSEELLEDIDKDTVDFSSNYDDRLQEPDVLPSAFPNLLVNGSSGIAVGMSTNIPPHNL 195 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ +A + LID+P+ ++E L+E++ GPDFPTG IV R++I +Y+ GRG RVRA + Sbjct: 196 GEVIDATIELIDDPDATVEDLMEHVKGPDFPTGANIV-GRDAIYSAYKTGRGRIRVRAEF 254 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFP 315 VEE G IV+TE+PYQ K+RL+E+IAE + I + D+RDES D VRIV+ Sbjct: 255 EVEEWKNGRERIVITELPYQENKARLVERIAEDVNEGDIEGISDLRDESDRDGVRIVVEC 314 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 K R + +++ ++ + + +E F + +N+ + PQV+ L L+E++AHRREV+ RR Sbjct: 315 K-RGANVEVV-KNKLLENHLEKTFGV-INLALVDGQPQVLSLKETLEEYIAHRREVVRRR 371 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAIL 432 S + + + R IL+G L A N ++++ +IRN D K + + + Q I+ Sbjct: 372 SEYDLAEAEDRAHILEGRLKAVENAEDVVDLIRNSETRDDAKAALQEAYDFSAEQATHIV 431 Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492 ++L SL +E +I+ E +++ AE E++ S+L S ++ I E+ E+K+ + Sbjct: 432 RMQLGSLTSMEAAEIEDEYEDVQAEIERLTSILESEQELLAVIKDELSEIKDEYDDD--- 488 Query: 493 GRRRTTFCEVSRADKATL-QQAMIEKEPITVVISNRGWIRSLKSHSVD--------LSAL 543 RRT+ E D+ T+ + +I +E + VV++ +++ + D + Sbjct: 489 --RRTSIIE----DQGTVTHEDLIPEEEVFVVMTEDDYVKRMPISQFDPQGRGGKGIIGA 542 Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQD 601 KE D + A+T D +L + GK Y L + + G++ ++DL+ +D Sbjct: 543 DVKEDDRVATVFRANTHDYLLCFTNQGKVYQLKTYEIPEMGRTARGKSAVNILDLDPGED 602 Query: 602 IVT----------AFVYDSTCKLLVVSSKGNAF--IVEESEIIANTRKGKTFLKVSSEEK 649 I FV +T V + G+ F I I A+ ++G + V + Sbjct: 603 ITAIVDTDAFGDDEFVTMATRHGYVKRTAGSEFDNIRSTGIIAADLQEGDELVDVEVTDG 662 Query: 650 MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRG----KGVRLQ 690 K +V + EN + F D++ M R G+ LQ Sbjct: 663 TKDLV--------IASENGMTIRFDEDEVRAMGRNARGVNGIDLQ 699 >gi|325972865|ref|YP_004249056.1| DNA gyrase subunit alpha [Spirochaeta sp. Buddy] gi|324028103|gb|ADY14862.1| DNA gyrase, A subunit [Spirochaeta sp. Buddy] Length = 855 Score = 406 bits (1044), Expect = e-111, Method: Compositional matrix adjust. Identities = 258/714 (36%), Positives = 400/714 (56%), Gaps = 35/714 (4%) Query: 30 YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89 YL YA+S I RA+PD+RDG KPVHRRI+ M EMGL +FKK ARIVG+V+GK HPH Sbjct: 22 YLNYAMSVIVSRALPDVRDGLKPVHRRILFDMFEMGLRANTSFKKCARIVGDVLGKYHPH 81 Query: 90 GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDE 149 GD SVYD+LVRLAQ F RYP+++ QGNFG+IDGD AAA RYTEA+M+++ E +LQ + + Sbjct: 82 GDASVYDALVRLAQDFSLRYPVVNPQGNFGSIDGDPAAAMRYTEAKMSRIGEEMLQDIQK 141 Query: 150 DAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDN 209 + V+F Y++ EP V P+ FP LLANG+SGIAVGMAT++ HN+QEIC+A A+IDN Sbjct: 142 ETVNFGPNYDDSMQEPTVLPASFPFLLANGSSGIAVGMATNMAPHNLQEICDAISAVIDN 201 Query: 210 PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIV 269 P+I+I++L+E+I GPDFP+GGII + I +++ GRG VR+ + +E R IV Sbjct: 202 PDITIDELMEHIKGPDFPSGGIIC-GLQGIKDAFMTGRGKIVVRSVYEIETSERDHDQIV 260 Query: 270 VTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFPKNRSLDPDLLMES 328 TEIPYQV K+ L++KI +L IP++ +RDES + +RIV+ K + +P +++ Sbjct: 261 FTEIPYQVNKADLVKKIDDLRKDGAIPMISVVRDESDRKGIRIVVELKVGA-EPMVVLNQ 319 Query: 329 IFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVE 388 +F + +++ F +N L GR PQ++ L +L ++ HR EV+ RR+ F ++ R Sbjct: 320 LFARTALQSNFNVNNLALVQGR-PQMLTLKDMLVYYIRHREEVVTRRTQFDLRKAQERAH 378 Query: 389 ILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVDAILNLRLRSLRKLEEY 445 IL+GL I NIDE+I II++ +VSRF L + Q AI++++L L LE Sbjct: 379 ILRGLKIGLDNIDEVIQIIKDSADNAIAADRLVSRFGLDQIQAQAIIDMKLGRLSHLETS 438 Query: 446 QIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRA 505 +I EL +L + +L+ + + E+R + RR T Sbjct: 439 KILEELADLEQKIAYYQEVLSDEGKILKLVQSEVRALPSSLVPKD----RRLTKIAREEL 494 Query: 506 DKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA--------LHFKEGDSLKIALHA 557 ++TL+ I+ E + V+ISN+G+ + +++ + ++GD + A Sbjct: 495 GQSTLED-FIKDEQVVVLISNKGFAKRIRAEEYEAHGRAGKGTRTTKLQDGDFVNHMFVA 553 Query: 558 HTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK-- 613 T + ++ ++ GKAY + S G +I+ ++ L + I + + + Sbjct: 554 FTHEYVMFVTNAGKAYYTKVFEIPEASKTAKGTSIKNILQLETTEKITSIISFKEFSEDH 613 Query: 614 -LLVVSSKGNAFIVEESEII-ANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLL 671 L++ + G V + + A R + +E + + GD V ++ + + L Sbjct: 614 YLMMATRDGVVKKVSLNNFVNAKVRGIRALFLDEGDELLSCDLIQEGDEVMLITKLGRGL 673 Query: 672 IFSIDQIPEMSRG-KGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSEN 724 F D + M R +GVR GI ++ GL +DS R +EN Sbjct: 674 RFRQDNVRAMGRASRGVR-------GIR-LLANDQVAGLLKVDSTKRILMITEN 719 >gi|195952749|ref|YP_002121039.1| DNA topoisomerase (ATP-hydrolyzing) [Hydrogenobaculum sp. Y04AAS1] gi|195932361|gb|ACG57061.1| DNA topoisomerase (ATP-hydrolyzing) [Hydrogenobaculum sp. Y04AAS1] Length = 766 Score = 406 bits (1044), Expect = e-111, Method: Compositional matrix adjust. Identities = 254/645 (39%), Positives = 389/645 (60%), Gaps = 58/645 (8%) Query: 28 ERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLH 87 + YL YA+S I RAIPD+RDG KPV RRI++AM EM L FKK ARIVG+ +G+ H Sbjct: 14 QSYLDYAMSVIVGRAIPDVRDGLKPVQRRILYAMYEMDLTPDKPFKKCARIVGDTMGRYH 73 Query: 88 PHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGV 147 PHGDQ++YD+LVR+AQ F RYPL+ GQGNFG+IDGD AA RYTEA+++++ +L+ + Sbjct: 74 PHGDQAIYDALVRMAQDFNLRYPLVIGQGNFGSIDGDPPAAMRYTEAKLSKITLSLLEDI 133 Query: 148 DEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALI 207 + D VDF ++E EP V P+K PNLL NGT+GIAVG+ATSIP HN++E+C+A +AL Sbjct: 134 ENDTVDFVPNFDESVMEPQVLPAKMPNLLCNGTTGIAVGLATSIPPHNLKEVCDALVALA 193 Query: 208 DNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWC 267 N +I++E+L++YI GPDFPTGGIIV E E Y+ GRG V+A+ VE+ G Sbjct: 194 QNQDITVEELMQYIKGPDFPTGGIIV--GEVSPEVYKTGRGQVTVQAKARVEKTSSGREQ 251 Query: 268 IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFPKNRSLDPDLLM 326 I++TEIPY V K+ LI+KIAEL + ++ + D+RDES E +RIV+ K R + ++ Sbjct: 252 IIITEIPYMVNKAELIKKIAELARSGKLKEISDLRDESDKEGIRIVIELK-RDAKGEAVL 310 Query: 327 ESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRR 386 + ++ + + FP+NM L +G P+++ L IL E+ HR V++RR+ F ++ + R Sbjct: 311 KKLYKNTSLRKNFPINMVAL-VGLEPKLLNLKDILLEFFKHRLNVIYRRTEFFLRKAEER 369 Query: 387 VEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLE 443 + I++GLLI +ID+II IR + + K ++S ++LTE Q AIL+LRL+ L LE Sbjct: 370 LHIVEGLLICIKDIDKIIETIRASQDTQEAKEKLMSGWNLTEKQAQAILDLRLQRLTSLE 429 Query: 444 EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVS 503 +++ E D L+ E I + N + + +I I+E KE+ + D R TF E Sbjct: 430 TSKLQKEHDELI---ENIKTYKNILENKQERINIFIKETKELADRFKD---PRRTFIE-- 481 Query: 504 RADKATLQQAMIEKEP-ITVVISNRGWIRSL------KSHSVDLSALHFKEGDSLKIALH 556 MI+++ + V ++ G+++ + KS V++++L F EG Sbjct: 482 ---------GMIKEDTYVDVFVTRNGFVKPIELLEEEKSPIVNVASLKFTEG-------- 524 Query: 557 AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDS-TCKLL 615 + ++S G+ Y LS G +I + + ++ +V AFV + +LL Sbjct: 525 ------LFIVSNKGRVYWTAGSEALS----GSSIHM---KDTDEHVVGAFVREQYNSRLL 571 Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH 660 ++++KG+ + E T+ G LK+S E+ VV ++G Sbjct: 572 ILTNKGSIKKIPLVEFEYKTQ-GFQILKLSEGEE---VVYISGSQ 612 >gi|146306879|ref|YP_001187344.1| DNA gyrase subunit A [Pseudomonas mendocina ymp] gi|145575080|gb|ABP84612.1| DNA gyrase subunit A [Pseudomonas mendocina ymp] Length = 922 Score = 406 bits (1044), Expect = e-111, Method: Compositional matrix adjust. Identities = 240/603 (39%), Positives = 359/603 (59%), Gaps = 57/603 (9%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 V++ L++ YL YA+S I RA+PD RDG KPVHRR+++AMSE+G D+ +KKSAR+V Sbjct: 11 VNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMSELGNDWNKPYKKSARVV 70 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGD +VYD++VR+AQ F RY L+ GQGNFG++DGD+AAA RYTE RMT++ Sbjct: 71 GDVIGKYHPHGDTAVYDTIVRMAQDFSLRYLLVDGQGNFGSVDGDNAAAMRYTEVRMTKL 130 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A +L +D++ VD+ Y+ + P V P+K PNLL NG+SGIAVGMAT+IP HN+ E+ Sbjct: 131 AHELLADLDKETVDWVPNYDGTEQIPAVMPTKVPNLLVNGSSGIAVGMATNIPPHNLSEV 190 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 + LALIDN +++++ L++YI GPDFPT GII R I+E+YR GRG +RAR VE Sbjct: 191 IDGCLALIDNADLTVDDLMQYIPGPDFPTAGII-NGRAGIIEAYRTGRGRIYIRARVEVE 249 Query: 260 EVGR--GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317 ++ + G +VVTE+PYQ+ K+RLIEKIAEL+ K+I + ++RDES +D V+ Sbjct: 250 DIDKVGGRQQLVVTELPYQLNKARLIEKIAELVKEKKIEGITELRDESDKDGMRVVIELR 309 Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377 R PD+++ +++ + M++ F +N+ L G+ P+ M L +L+ ++ HRREV+ RR+ Sbjct: 310 RGEVPDVVLNNLYAQTQMQSVFGINVVALVDGQ-PKTMNLKDMLEVFVRHRREVVTRRTV 368 Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK----------------PVMVSR- 420 + ++ R IL+G +A NID +I +I+ P MV R Sbjct: 369 YELRKARERGHILEGQAVALSNIDPVIELIKASPTPAEAKERLIATAWESSAVEAMVERA 428 Query: 421 --------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEK 460 + L+ Q AIL LRL L LE ++ +E +L+ + Sbjct: 429 GADSCRPEGLDPQYGLREGKYYLSPEQAQAILELRLHRLTGLEHEKLLAEYQEILSLIGE 488 Query: 461 IDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI 520 + +L S ++ I E+ +VK F + RRT SR D T+ + E+E + Sbjct: 489 LIRILTSPERLMEVIREELEKVKAEFGDA-----RRTEII-ASRQD-LTIADLITEEERV 541 Query: 521 TVVISNRGWIRSLKSHSVDL--------SALHFKEGDSLKIALHAHTTDRILLLSTDGKA 572 V IS+ G+ +S + + SA K+ D ++ L A++ +LL S+ GK Sbjct: 542 -VTISHGGYAKSQPLAAYEAQRRGGKGKSATGVKDEDYVEHLLVANSHATLLLFSSKGKV 600 Query: 573 YTL 575 Y L Sbjct: 601 YWL 603 >gi|290889526|ref|ZP_06552616.1| hypothetical protein AWRIB429_0006 [Oenococcus oeni AWRIB429] gi|290480724|gb|EFD89358.1| hypothetical protein AWRIB429_0006 [Oenococcus oeni AWRIB429] Length = 866 Score = 406 bits (1044), Expect = e-111, Method: Compositional matrix adjust. Identities = 227/615 (36%), Positives = 373/615 (60%), Gaps = 36/615 (5%) Query: 8 NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67 N+N + +K L + +L+YA+S I RA+PD+RDG KPVHRRI+ M+E+G+ Sbjct: 6 NNNFTPDSRIKDTDLNKTMRTSFLSYAMSVIVARALPDVRDGLKPVHRRILFGMNELGVT 65 Query: 68 FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAA 127 KKSARIVG+V+GK HPHGD ++Y+SLVR+AQPF RYPL+ G GNFG++DGD AA Sbjct: 66 PDKPHKKSARIVGDVMGKFHPHGDSAIYESLVRMAQPFSYRYPLVDGHGNFGSVDGDPAA 125 Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187 A RYTEAR++++A +L+ +++ VDF+ +Y+ ++ EPVV PS+FPNLL NG GIAVGM Sbjct: 126 AMRYTEARLSKIALEMLRDINKGTVDFQPSYDGDNREPVVLPSRFPNLLVNGAQGIAVGM 185 Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247 AT+IP+HN++E+ A L+ NP+ ++ L+E + GPDFPTG I++ + I +Y GR Sbjct: 186 ATNIPTHNLREVIAAIHVLMANPDATVADLMEALPGPDFPTGAIVM-GKSGIRRAYETGR 244 Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307 G VR++ +E G I V+E+PY V K++LIE+I EL++ K++ + IRDES + Sbjct: 245 GSVTVRSKVDIETSSSGHERISVSELPYMVNKAKLIERIRELVLEKKLEGITAIRDESDQ 304 Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367 + + R + ++++ +++ + ++T F NM ++ G+ P+ M L IL +L H Sbjct: 305 NGLRIAIDVGRDANANVVLNNLYKQTLLQTSFSFNMIAINHGK-PETMSLKQILVAYLEH 363 Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLT 424 +RE++ RR+ F ++ R IL+GL IA +ID II +IR+ + K +++R+ L+ Sbjct: 364 QREIIRRRTEFDLKKAQDRAHILEGLRIALDHIDAIIELIRSSNTAEIAKNELINRYQLS 423 Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484 + Q AIL++RL L LE +I++E +LL E +L + ++ +QI + E+ + Sbjct: 424 DKQAQAILDMRLVRLTGLERGKIETEYTDLLKSIEDFKDIL-AKPERIDQIIYQ--ELLD 480 Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKS---HSVD-- 539 I +K D R +VS + + +I++E + + ++++G+I+ L + H+ + Sbjct: 481 IANKFGDERRTELQVGDVS----SIEDEDLIDEEEVLISLTHKGYIKRLSTSEFHTQNRG 536 Query: 540 ---LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL---------------PAGNLL 581 + ++ + D ++ + T D +L S GK Y + P NLL Sbjct: 537 GRGVKGMNTHDDDFVEQLVSTSTHDTLLFFSDQGKVYKMKGYEVPEYGRQAKGIPVINLL 596 Query: 582 SGRGHGEAIQLLIDL 596 G GE +Q +I++ Sbjct: 597 -GLDAGERVQAVINV 610 >gi|148926065|ref|ZP_01809751.1| DNA gyrase subunit A [Campylobacter jejuni subsp. jejuni CG8486] gi|145845544|gb|EDK22636.1| DNA gyrase subunit A [Campylobacter jejuni subsp. jejuni CG8486] Length = 862 Score = 406 bits (1044), Expect = e-111, Method: Compositional matrix adjust. Identities = 237/607 (39%), Positives = 377/607 (62%), Gaps = 32/607 (5%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 + +++ V + +++ YL Y++S I RA+PD RDG KPVHRRI++AM F Sbjct: 8 DSDIELVDIENSIKGSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFV 67 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSARIVG VIG+ HPHGD +VYD+LVR+AQ F RYP I+GQGNFG+IDGDSAAA RYTE Sbjct: 68 KSARIVGAVIGRYHPHGDIAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTE 127 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 A+M++++ +L+ +D+D VDF Y+ +SEP V PS+ PNLL NG+SGIAVGMAT+IP Sbjct: 128 AKMSKLSHELLKDIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPP 187 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 H++ E+ + L L+D+ + S+E+++++I GPDFPTGGII ++ I+E+YR GRG +VR Sbjct: 188 HSLNELIDGLLYLLDSKDASLEEIMQFIKGPDFPTGGIIY-GKKGIIEAYRTGRGRVKVR 246 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIV 312 A+ +E+ IV+ E+PYQ K+RLIE+IAEL+ K+I + ++RDES E +R+V Sbjct: 247 AKTHIEK-KTNKDVIVIDELPYQTNKARLIEQIAELVKEKQIEGISEVRDESNKEGIRVV 305 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 + K ++ ++++ ++F + ME+ F + M + + P++ L +L +L HR+ V+ Sbjct: 306 IELKREAM-SEIVLNNLFKSTTMESTFGVIMLAIH-NKEPKIFSLLELLNLFLTHRKTVI 363 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLTENQVD 429 RR+ F +Q R IL+GL IA NIDE+IA+I+N + + +V++F L+E Q + Sbjct: 364 IRRTIFELQKARARAHILEGLKIALDNIDEVIALIKNSSDNNTARDSLVAKFGLSELQAN 423 Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489 AIL+++L L LE +I++EL L+ E +++ +L S N I E++E++ F Sbjct: 424 AILDMKLGRLTGLEREKIENELAELMKEIARLEEILKSETLLENLIRDELKEIRSKF--- 480 Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS-------- 541 D+ R ++ + +I E + V I++RG+I+ + S + Sbjct: 481 -DVPR----ITQIEDDYDDIDIEDLIPNENMVVTITHRGYIKRVPSKQYEKQKRGGKGKL 535 Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDL 596 A+ + D ++ A+T D ++ ++ G K Y +P G S G+A+ LI+L Sbjct: 536 AVTTYDDDFIESFFTANTHDTLMFVTDRGQLYWLKVYKIPEG---SRTAKGKAVVNLINL 592 Query: 597 NHNQDIV 603 + I+ Sbjct: 593 QAEEKIM 599 >gi|154503044|ref|ZP_02040104.1| hypothetical protein RUMGNA_00866 [Ruminococcus gnavus ATCC 29149] gi|153796285|gb|EDN78705.1| hypothetical protein RUMGNA_00866 [Ruminococcus gnavus ATCC 29149] Length = 837 Score = 406 bits (1044), Expect = e-111, Method: Compositional matrix adjust. Identities = 246/674 (36%), Positives = 385/674 (57%), Gaps = 38/674 (5%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 + V V L+ +E Y+ YA+S I RA+PD+RDG KPV RRI+++M E+ +K Sbjct: 7 DKVHEVDLKKTMETSYIDYAMSVIASRALPDVRDGLKPVQRRILYSMIELNNGPDKPHRK 66 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 ARIVG+ +GK HPHGD S+Y +LV LAQ + RYPL+ G GNFG++DGD AAA RYTEA Sbjct: 67 CARIVGDTMGKYHPHGDSSIYGALVNLAQEWSTRYPLVDGHGNFGSVDGDGAAAMRYTEA 126 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 R+++++ + ++++ VDF ++E + EP V P++FPNLL NGTSGIAVGMAT+IP H Sbjct: 127 RLSKISMEMTADINKNTVDFAPNFDETEKEPTVLPARFPNLLVNGTSGIAVGMATNIPPH 186 Query: 195 NVQEICEAALALID-----NPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249 N++EI A + +ID N E SI+ +L+ + GPDFPTG I+ +R I E+YR GRG Sbjct: 187 NLREIIGAVVKIIDDQIDENGETSIDDILKIVKGPDFPTGAEILGTR-GIEEAYRTGRGK 245 Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309 RVRA +E + G I+VTE+PY V K+RLIEKIAEL+ K++ + D+ D+S+ + Sbjct: 246 IRVRAITNIEPMANGKNRIIVTELPYMVNKARLIEKIAELVRDKKVDGITDLSDQSSREG 305 Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369 + R ++P++++ ++ + ++ F + M L + P+VM + +LK +L H+ Sbjct: 306 MRICIELRRDVNPNVILNQLYKHTQLQDTFGVIMLAL-VNNEPKVMNILDMLKHYLKHQE 364 Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTEN 426 EV+ RR+ + + + R IL+GLLIA NIDE+I IIR N K +++RF LTE Sbjct: 365 EVVTRRTQYELNRAEERAHILQGLLIALDNIDEVIRIIRGSKNVQTAKEELMARFDLTEV 424 Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486 Q AI+++RLR+L LE ++++E + L+ + ++ ++L K I KEI Sbjct: 425 QASAIVDMRLRALTGLEREKLEAEYEELMKKIGELKAILADRKLLLGVIK------KEIL 478 Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD------- 539 S G R T D + + +I +E + + ++ G+I+ + + Sbjct: 479 VISEKYGDERRTSIGFDEFDIS--MEDLIPRENVVITMTKMGYIKRMSMDTFKSQNRGGK 536 Query: 540 -LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDL 596 + + + D +K T I+ + G+ Y L + S G AI L+ L Sbjct: 537 GIKGMQILDDDYIKELFITTTHHYIMFFTNTGRVYRLKGYEIPEASRTARGTAIINLLQL 596 Query: 597 NHNQDIVTAFV----YDSTCKLLVVSSKGNAFIVEESEI--IANTRKGKTFLKVSSEEKM 650 ++ I TA + Y+ LL+ + KG +V+++ I AN RK V E+ Sbjct: 597 MPDEKI-TAMIPIREYEDGQYLLMATEKG---LVKKTPIKDYANVRKTGLAAIVLREDDK 652 Query: 651 KLVVKVTGDHVAVV 664 + VK+T D V+ Sbjct: 653 LIEVKITDDEQDVI 666 >gi|149371419|ref|ZP_01890905.1| DNA gyrase A subunit [unidentified eubacterium SCB49] gi|149355557|gb|EDM44116.1| DNA gyrase A subunit [unidentified eubacterium SCB49] Length = 840 Score = 406 bits (1044), Expect = e-111, Method: Compositional matrix adjust. Identities = 231/609 (37%), Positives = 368/609 (60%), Gaps = 31/609 (5%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 E + ++++ ++ Y+ Y++S I RA+PD+RDG KPVHRR++ M E+G+ A KK Sbjct: 5 EKLISINIEDEMKSAYIDYSMSVIVSRALPDVRDGMKPVHRRVLFGMHELGIRATGAHKK 64 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 SARIVGEV+GK HPHGD SVYD++VR+AQ + RY L+ GQGNFG+IDGDS AA RYTEA Sbjct: 65 SARIVGEVLGKYHPHGDTSVYDAMVRMAQEWSLRYMLVDGQGNFGSIDGDSPAAMRYTEA 124 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 RM +++E +L +D++ VD + +++ EP V P++ P LL NG SGIAVGMAT++P H Sbjct: 125 RMQRISEDMLADIDKETVDHQLNFDDTLMEPKVLPTRIPGLLINGASGIAVGMATNMPPH 184 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 N+ E+ LA ID+ EI+I+ L+E+I PDFPTGGII + + +++ GRG +RA Sbjct: 185 NLTEVVNGTLAYIDDDEITIDGLMEHIKAPDFPTGGIIY-GYDGVKDAFHTGRGRVVMRA 243 Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314 + EEV +G CI+V+EIPYQV K+ +I+K A+L+ K+I + +IRDES + +++ Sbjct: 244 KASFEEV-QGRECIIVSEIPYQVNKADMIKKTADLVNEKKIEGIANIRDESDRNGMRIVY 302 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 R P++++ +++ + +++ F +N L GR PQ++ L ++ ++ HR EV+ R Sbjct: 303 ILKRDAIPNIVLNTLYKYTALQSSFSVNNIALVNGR-PQLLNLKELIHYFVEHRHEVVVR 361 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAI 431 R+ + ++ + R IL+GL+IA NIDE+I +IR N D+ + ++ F LTE Q AI Sbjct: 362 RTEYLLRKANERAHILEGLIIASDNIDEVIRLIRASANADEARAALIEAFKLTEIQAKAI 421 Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491 + +RLR L LE+ ++++E + L+ +L + +++ N I E+ EV+ + Sbjct: 422 VEMRLRQLTGLEQDKLRAEYEELMKTIADYKDILANKERRMNIIKEELLEVQRKY----- 476 Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSH------SVDLSAL 543 G R + E + D + +I E + + IS+ G+I+ SL + V A Sbjct: 477 -GDDRRSVIEYAGGDVSITD--LIPDEQVVLTISHAGYIKRTSLTEYKTQNRGGVGQKAS 533 Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKA-----YTLPAGNLLSGRGHGEAIQLLIDLNH 598 + D L+ +L + GK + +P G+ S G AIQ LI++ Sbjct: 534 ATRNEDFLEHLFVGTNHQYMLFFTQKGKCFWMRVFEIPEGSKTS---KGRAIQNLINIEP 590 Query: 599 NQDIVTAFV 607 + D V AF+ Sbjct: 591 D-DKVMAFI 598 >gi|313889353|ref|ZP_07823001.1| DNA gyrase, A subunit [Streptococcus pseudoporcinus SPIN 20026] gi|313122185|gb|EFR45276.1| DNA gyrase, A subunit [Streptococcus pseudoporcinus SPIN 20026] Length = 836 Score = 406 bits (1044), Expect = e-111, Method: Compositional matrix adjust. Identities = 241/641 (37%), Positives = 378/641 (58%), Gaps = 41/641 (6%) Query: 12 LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71 + ++N+ V+L ++ ++ YA+S I RA+PD+RDG KPVHRRI++ M+E+G+ Sbjct: 1 MQDKNLIDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKP 60 Query: 72 FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131 KKSARI G+V+GK HPHGD S+Y+++VR+AQ + R+ L+ G GNFG++DGD AAA RY Sbjct: 61 HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRY 120 Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191 TEARM+++A +L+ ++++ VDF+D Y+ + EP+V P++FPNLL NG +GIAVGMAT+I Sbjct: 121 TEARMSKIALELLKDINKNTVDFQDNYDGSEREPLVLPARFPNLLVNGATGIAVGMATNI 180 Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251 P HN+ E +A ++++PE + L+E I GPDFPTG +++ R I +Y G+G Sbjct: 181 PPHNLGESIDAVKMVMEHPECTTRDLMEVIPGPDFPTGALVM-GRSGIHRAYDTGKGSIV 239 Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVR 310 +R+R +E G IVVTE PY V K+++ E I L KRI + +RDES+ E VR Sbjct: 240 LRSRTEIELTKTGRERIVVTEFPYGVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGVR 299 Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370 V+ K R ++++ ++F L+ ++T F NM + G VP+++ L I+ +++H++E Sbjct: 300 FVIEVK-RDASANVILNNLFKLTSLQTNFSFNMLAIENG-VPKILTLRQIIDNYISHQKE 357 Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQ 427 V+ RR+ F + + R IL+GLLIA ++DE+IAIIRN + ++SRF L+E Q Sbjct: 358 VITRRTRFDKEKAEARAHILEGLLIALDHLDEVIAIIRNSQTDIIAQGELMSRFQLSERQ 417 Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQI-ACEIREVKEIF 486 AIL++RLR L LE +I+SE D+L+A + +L + ++I A I+E+ EI Sbjct: 418 SQAILDMRLRRLTGLERDKIQSEYDDLIALIADLADIL----AKPDRISAIIIQEMDEIK 473 Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSV 538 K D R EV + + +IE E + + +SN+G+I+ L K Sbjct: 474 RKYADPRRTELMVGEVLSLE----DEDLIEVEDVLITLSNKGYIKRLAQDEFRAQKRGGR 529 Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLLSG 583 + + D +K + T D +L + G+ Y LP NLL Sbjct: 530 GVQGTGVNDDDFVKELVSTSTHDTLLFFTNKGRVYRLKAYEIPEYGRTAKGLPIVNLLK- 588 Query: 584 RGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAF 624 E IQ +I+ +DI F + +T + LV + + F Sbjct: 589 LDEEETIQTIINA-RKEDIDNKFFFFTTRQGLVKRTNASEF 628 >gi|28868951|ref|NP_791570.1| DNA gyrase subunit A [Pseudomonas syringae pv. tomato str. DC3000] gi|213968721|ref|ZP_03396863.1| DNA gyrase, subunit A [Pseudomonas syringae pv. tomato T1] gi|301381336|ref|ZP_07229754.1| DNA gyrase subunit A [Pseudomonas syringae pv. tomato Max13] gi|302060238|ref|ZP_07251779.1| DNA gyrase subunit A [Pseudomonas syringae pv. tomato K40] gi|302130027|ref|ZP_07256017.1| DNA gyrase subunit A [Pseudomonas syringae pv. tomato NCPPB 1108] gi|28852191|gb|AAO55265.1| DNA gyrase, subunit A [Pseudomonas syringae pv. tomato str. DC3000] gi|213926654|gb|EEB60207.1| DNA gyrase, subunit A [Pseudomonas syringae pv. tomato T1] gi|331016841|gb|EGH96897.1| DNA gyrase subunit A [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 928 Score = 406 bits (1044), Expect = e-111, Method: Compositional matrix adjust. Identities = 244/639 (38%), Positives = 371/639 (58%), Gaps = 59/639 (9%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 V++ L++ YL YA+S I RA+PD RDG KPVHRR++ AMSE+G D+ +KKSAR+V Sbjct: 11 VNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDWNKPYKKSARVV 70 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG++DGD+AAA RYTE RMT++ Sbjct: 71 GDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRYTEVRMTKL 130 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A +L + ++ VD+ Y+ + P V P++ PNLL NG+SGIAVGMAT+IP HN+ E+ Sbjct: 131 AHELLADLHKETVDWVPNYDGTEMIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHNLGEV 190 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 + LALIDNPE++I++L++YI GPDFPT II R I+E+YR GRG +RAR VE Sbjct: 191 IDGCLALIDNPELTIDELMQYIPGPDFPTAAII-NGRAGIIEAYRTGRGRIYMRARSIVE 249 Query: 260 EVGR--GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317 ++ + G IV+TE+PYQ+ K+RLIEKIAEL+ K++ + ++RDES +D V+ Sbjct: 250 DIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKLEGITELRDESDKDGMRVVIELR 309 Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377 R P++++ +++ + +++ F +N+ L GR P+++ L +L+ ++ HRREV+ RR+ Sbjct: 310 RGEVPEVVLNNLYAQTQLQSVFGINIVALIDGR-PRILNLKDLLEAFVRHRREVVTRRTV 368 Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV----------------MVSR- 420 F ++ R IL+G +A NID +IA+I+ P MV R Sbjct: 369 FELRKARERGHILEGQAVALSNIDPVIALIKASPTPAEAKEALIKTPWESSAVVEMVERA 428 Query: 421 --------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEK 460 + L+ Q AIL LRL L LE ++ E +LA+ + Sbjct: 429 GADSCRPENLDPQYGLREGKYFLSPEQAQAILELRLHRLTGLEHEKLLGEYQEILAQIGE 488 Query: 461 IDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI 520 + +LNS + I E+ ++ + + RRT + +R D TL + E+E + Sbjct: 489 LIRILNSATRLMEVIREELELIRAEYGDA-----RRTEILD-ARLD-LTLGDLITEEERV 541 Query: 521 TVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKA 572 V IS+ G+ ++ + SA K+ D + L A++ +L+ S+ GK Sbjct: 542 -VTISHGGYAKTQPLAVYQAQRRGGKGKSATGIKDEDYIAHLLVANSHTTLLMFSSKGKV 600 Query: 573 YTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609 Y L + S G + L+ L+ + I T D Sbjct: 601 YWLKTYEIPEASRAARGRPLVNLLPLSEGEYITTMLPVD 639 >gi|119774866|ref|YP_927606.1| DNA gyrase subunit A [Shewanella amazonensis SB2B] gi|119767366|gb|ABL99936.1| DNA gyrase subunit A [Shewanella amazonensis SB2B] Length = 901 Score = 406 bits (1044), Expect = e-111, Method: Compositional matrix adjust. Identities = 272/723 (37%), Positives = 400/723 (55%), Gaps = 83/723 (11%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 ++ +++ L+ YL YA+S I RA+PD+RDG KPVHRR++ AM+E+ D+ +KKS Sbjct: 7 SISPINIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELKNDWNKPYKKS 66 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 AR+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG+IDGD+AAA RYTE R Sbjct: 67 ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYTLVDGQGNFGSIDGDAAAAMRYTEIR 126 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 M ++A +L ++++ VDF Y+ + P V P+K PNLL NG SGIAVGMAT+IP HN Sbjct: 127 MEKLAHELLADLEKETVDFVPNYDGTEQIPAVLPTKIPNLLVNGASGIAVGMATNIPPHN 186 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 + E+ + LALI+ PE+SIE+L+EYI GPDFPT II ++ I E+YR GRG +RAR Sbjct: 187 LTEVVKGCLALIEEPELSIEQLMEYIPGPDFPTAAII-NGKKGIEEAYRTGRGKAIMRAR 245 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314 VE G I+VTEIPYQV K+RLIEKIAEL+ K+I + +RDES +D +RIV+ Sbjct: 246 AEVEIEDNGRERIIVTEIPYQVNKARLIEKIAELVKDKKIEGISGLRDESDKDGMRIVIE 305 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K R ++++ +++ + M++ F +NM L+ G+ P++ L +L+ ++ HRREV+ R Sbjct: 306 IK-RGEVGEVVLNNLYAQTQMQSSFGINMVALANGQ-PKLFNLKEMLEAFILHRREVVTR 363 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----------- 420 R+ + ++ R IL+ L +A NID IIA+I+ P K ++++ Sbjct: 364 RTVYELRKARDRAHILEALAVALANIDPIIALIKASASPSDAKAGLIAKGWELGTVKAML 423 Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457 + +TE Q AIL+LRL L LE +I E + LL Sbjct: 424 EKAGDDAARPEWLEPEFGIRDGLYFMTEPQAQAILDLRLHKLTGLEHEKILQEYEELLEI 483 Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517 + +L S ++ I E+ + E F G R T S D + + +I + Sbjct: 484 IAGLLHILRSPERLMEVIKEELELILEQF------GDNRRTEINASAVDISL--EDLINE 535 Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569 E + V +S+ G+ + + + +A K+ D ++ L A+T D IL S Sbjct: 536 EDVVVTLSHLGYAKYQPLTDYQAQRRGGKGKAATKVKDEDFVEKLLVANTHDTILCFSDF 595 Query: 570 GKAYTLPAGN--LLSGRGHGEAIQLLIDLNHNQDIVTAFV----YDSTCKLLVVSSKGNA 623 GK Y L L S + G I L+ L + I TA + Y+ +L+ +S G Sbjct: 596 GKLYWLKVYQLPLASRQARGRPIVNLLPLQEGERI-TAILPVREYEEGKYILMATSHGTV 654 Query: 624 FIVEESE---------IIANTRKGKTFLKV-----SSE-----EKMKLVVKVTGDHVAVV 664 +E I N + G + V SSE + K+V G+ VAVV Sbjct: 655 KKTALTEYSRPRSNGIIAVNLKDGDQLIGVDITDGSSEIMLFSDAGKVVRFKEGEEVAVV 714 Query: 665 GEN 667 EN Sbjct: 715 DEN 717 >gi|89891307|ref|ZP_01202813.1| DNA gyrase (type IIA topoisomerase), subunit A [Flavobacteria bacterium BBFL7] gi|89516338|gb|EAS18999.1| DNA gyrase (type IIA topoisomerase), subunit A [Flavobacteria bacterium BBFL7] Length = 840 Score = 406 bits (1044), Expect = e-111, Method: Compositional matrix adjust. Identities = 222/604 (36%), Positives = 368/604 (60%), Gaps = 30/604 (4%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 E + +++ ++ Y+ Y++S I RA+PD+RDG KPVHRR+++ M E+G+ +KK Sbjct: 5 EKLIPINIEDEMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMYELGVLSNRGYKK 64 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 SARIVGEV+GK HPHGD SVYD++VR+AQ + RY L+ GQGNFG++DGD AA RYTEA Sbjct: 65 SARIVGEVLGKYHPHGDTSVYDTMVRMAQEWSLRYMLVDGQGNFGSVDGDPPAAMRYTEA 124 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 RM +++E IL +D++ VD + +++ +EP V P++ PNLL NG SGIAVGMAT++P H Sbjct: 125 RMRKISEEILADIDKETVDTQLNFDDTLNEPTVMPTRIPNLLVNGASGIAVGMATNMPPH 184 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 N+ E+ + +A IDN +I I++L+ ++ PDFPTGGII + + ++ GRG ++R Sbjct: 185 NLTEVIDGTVAYIDNNDIEIDELITHVKAPDFPTGGIIY-GYDGVKDAMHTGRGRVKIRG 243 Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314 R +EEV +G CI+V E+PYQV K+ +I+K A+LI K++ + IRDES + +++ Sbjct: 244 RVRLEEV-KGRECIIVDELPYQVNKADMIKKTADLINEKKLEGISMIRDESDRNGMRIVY 302 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 R P++++ ++ + +++ F +N L GR PQ++ + ++ ++ HR +V+ R Sbjct: 303 ILKRDAIPNIVINKLYKHTALQSSFSVNNIALVKGR-PQLLNVKEMIHYFVEHRHDVVVR 361 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAI 431 R+ F ++ + R IL+GL+IA NIDE+IA+IR N ++ + ++ RF L+E Q AI Sbjct: 362 RTEFELRKAEERAHILEGLIIASDNIDEVIALIRSSSNGEEAREKLIKRFELSEIQARAI 421 Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491 + +RLR L LE+ ++++E ++L+A + +L +++ + I E+ E+KE + Sbjct: 422 VEMRLRQLTGLEQDKLRNEYNDLIATITDLKDILARKERRMDIIKEELIEIKEKY----- 476 Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSAL 543 G R + E + D + + MI E + + IS+ G+I ++ V A Sbjct: 477 -GDERRSQIEYAGGDLSI--EDMIADEQVVITISHAGYIKRTPITEYKTQNRGGVGQKAS 533 Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKA-----YTLPAGNLLSGRGHGEAIQLLIDLNH 598 ++ D L+ +L + GK Y +P G+ S G AIQ LI++ Sbjct: 534 TTRDEDFLEDIFVGTNHQYMLFFTEKGKCFWMRVYEIPEGSRTS---KGRAIQNLINIEQ 590 Query: 599 NQDI 602 + ++ Sbjct: 591 DDNV 594 >gi|288958233|ref|YP_003448574.1| DNA gyrase subunit A [Azospirillum sp. B510] gi|288910541|dbj|BAI72030.1| DNA gyrase subunit A [Azospirillum sp. B510] Length = 927 Score = 406 bits (1043), Expect = e-111, Method: Compositional matrix adjust. Identities = 256/727 (35%), Positives = 397/727 (54%), Gaps = 71/727 (9%) Query: 6 ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65 +SN+ ++ +++ + + YL YA+S I RA+PD+RDG KPVHRRI++AM E G Sbjct: 1 MSNTPLPPASDIAPINIEDEMRKSYLDYAMSVIVSRALPDVRDGLKPVHRRILYAMKEGG 60 Query: 66 LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125 D +KKSARIVG+V+GK HPHGD ++YD++VR+AQ F R PLI GQGNFG++DGD Sbjct: 61 YDSTKPYKKSARIVGDVMGKYHPHGDSAIYDAMVRMAQDFSMRLPLIDGQGNFGSMDGDP 120 Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185 AA RYTEAR+ + AE +L +D+D +DF+ +Y++ EP V P++FPNLL NG GIAV Sbjct: 121 PAAMRYTEARLAKAAEALLDDIDKDTIDFQASYDDSGREPTVVPARFPNLLVNGAGGIAV 180 Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245 GMAT+IP+HN+ E+ +A A IDNP++++++L+E++ GPDFPTGG+I+ R + + Sbjct: 181 GMATNIPTHNLGEVIDACCAYIDNPDVTLDELMEHVPGPDFPTGGLIL-GRSGSRAALQT 239 Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305 GRG +RA+ EEV + I+ TEIPYQV K++L+E+I E++ K I + D+RDES Sbjct: 240 GRGSIILRAKTHFEEVRKDRTAIIATEIPYQVNKAKLMERIGEVVNDKTIEGIADLRDES 299 Query: 306 AED-VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364 D VR+V+ K R PD+++ +F + ++T F +NM L+ GR P++M L ++ + Sbjct: 300 DRDGVRVVIELK-RDAVPDVVLAQLFRHTQLQTSFGVNMLALNGGR-PELMNLLDVITAF 357 Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV-----MVS 419 + R +V+ RR+ F + R L GL +A N+D +I +IR+ P PV M++ Sbjct: 358 VRFREQVITRRTEFLLGKARERAHTLVGLAVAVANLDAMIGLIRS--APDPVWAREEMMN 415 Query: 420 R--------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453 R + L+E Q AIL+LRL L LE +I +EL + Sbjct: 416 REWPVHDVGPLIELIDEPGRGVSDQGTYRLSEVQARAILDLRLHRLTGLERDKIGAELKD 475 Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513 + + + L + + + E+ E+KE F RRT E+ + + Sbjct: 476 VTDQIADFLATLANRPKLMGILRDELVEMKERFGTP-----RRT---EIQDLEFEADIED 527 Query: 514 MIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565 +I++E + V +S G++ R+ K + + K D++ A+T +LL Sbjct: 528 LIQREDMVVTVSQSGYVKRVPLSTYRAQKRGGKGRAGMSMKAEDAVSDLFVANTHTPLLL 587 Query: 566 LSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD------STCKL 614 S G K Y LP GN + G+A L+ L + I T + + Sbjct: 588 FSNRGMVYKLKVYRLPLGNP---QARGKAFVNLLPLIDGETITTVLPLPEDEAAWADLHV 644 Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT---GDHVAVVGENRKLL 671 + +SKGN S+ AN R EE +L+ T D + + K + Sbjct: 645 VFATSKGNVRRNRMSD-FANIRSNGLIAMKLEEEGERLIGVHTCSETDDILLATRGGKCI 703 Query: 672 IFSIDQI 678 F +D + Sbjct: 704 RFPVDDV 710 >gi|269216532|ref|ZP_06160386.1| DNA gyrase, A subunit [Slackia exigua ATCC 700122] gi|269130061|gb|EEZ61143.1| DNA gyrase, A subunit [Slackia exigua ATCC 700122] Length = 818 Score = 406 bits (1043), Expect = e-111, Method: Compositional matrix adjust. Identities = 236/620 (38%), Positives = 369/620 (59%), Gaps = 37/620 (5%) Query: 6 ISNSNTLVEENVKAVSLRFA-----LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60 +S+++ L E + +R A + +L Y++S I RA+PD+RDG KPVHRRI++A Sbjct: 1 MSDNDILNEADSGGTGVRLAELGSEMRTSFLEYSMSVIVSRALPDVRDGLKPVHRRILYA 60 Query: 61 MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120 M + G+ KSAR VG+VIGK HPHGD +VYD++VRLAQ F R PL+ G GNFG+ Sbjct: 61 MHDSGILPTRPHAKSARTVGDVIGKYHPHGDSAVYDTMVRLAQDFSMRVPLVDGHGNFGS 120 Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180 IDGDSAAA RYTEAR+ + A +L+ +D++ VD++ Y+E EPVV P++FPNLL NG+ Sbjct: 121 IDGDSAAAMRYTEARLAKPAMELLRDLDKETVDWQPNYDESLQEPVVLPARFPNLLVNGS 180 Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240 +GIAVGMAT+IP HN+ E +A ++DNP++++++L++ I GPDFPTGG+I+ R+ I Sbjct: 181 NGIAVGMATNIPPHNLGEAIDATCLMLDNPDVTVDELMQVIPGPDFPTGGLIM-GRKGIK 239 Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300 ++Y GRG VR+R + E G IV+TEIPYQV ++ L++KI EL+ K++P + + Sbjct: 240 DAYETGRGSLTVRSRHKIIESKTGKKSIVITEIPYQVNRTNLMKKIGELVRDKKLPEISN 299 Query: 301 IRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLD 358 + D + + V I++ K+ ++ P +++ ++ + ++ F + +N+ + VP+ + L Sbjct: 300 VHDGADRNSPVDIIIDLKSNAI-PQVVLNKLYKHTQLQVGFGV-INLALVDGVPRTLSLR 357 Query: 359 GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV-- 416 +L+ ++ H+ +V+ RR+ F ++ + R IL+GLLIA NIDE+I IIR + Sbjct: 358 EMLRHYILHQEDVIVRRTRFDLRKAEERAHILEGLLIALDNIDEVIKIIRGSQTDREASE 417 Query: 417 -MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKI---DSLLNSGKQQW 472 + RF+L+E Q AIL +RLR L LE ++++ EL L KEKI +L+ Sbjct: 418 RLQERFNLSEAQTAAILEMRLRRLTGLERHKLEDELAEL---KEKIAYYKRILSDESLVR 474 Query: 473 NQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI-- 530 I E+ E+K F+ RRTT C A+ ++ +I E + V ++ G++ Sbjct: 475 EVIKEELLEIKGRFNTP-----RRTTLC--GEAEDIDVED-LIADEEVAVTVTKAGYVKR 526 Query: 531 ------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR 584 R K + ++ KE D ++ A T +L ST GK Y L + Sbjct: 527 IPVSAYRQQKRGGKGMQGVNLKENDFVEHLFVASTHSYMLFFSTAGKVYRLKVYEIPEAS 586 Query: 585 GH--GEAIQLLIDLNHNQDI 602 H G AI L+ L + I Sbjct: 587 RHARGTAIVNLLPLVKGESI 606 >gi|50085721|ref|YP_047231.1| DNA gyrase, subunit A, type II topoisomerase [Acinetobacter sp. ADP1] gi|49531697|emb|CAG69409.1| DNA gyrase, subunit A, type II topoisomerase [Acinetobacter sp. ADP1] Length = 909 Score = 406 bits (1043), Expect = e-111, Method: Compositional matrix adjust. Identities = 262/734 (35%), Positives = 409/734 (55%), Gaps = 76/734 (10%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 ++ +++ L+ YL YA+S I RA+PD+RDG KPVHRR+++AM E+G D+ A+KKSA Sbjct: 6 IRPIAIEDELKHSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMHELGNDYNKAYKKSA 65 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD +VYD++VR+AQ F RY L+ GQGNFG++DGDSAAA RYTE RM Sbjct: 66 RVVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYLLVDGQGNFGSVDGDSAAAMRYTEVRM 125 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 T++ +L +++D VD+ D Y+ + P V P++ PNLL NG +GIAVGMAT++ H++ Sbjct: 126 TKLTHELLADLEKDTVDWVDNYDGSERIPDVLPTRIPNLLINGAAGIAVGMATNMAPHHL 185 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ A LA DNP ISIE L+E+I GPDFPTGGII + IV++YR G+G +R ++ Sbjct: 186 NEVIHACLAYADNPNISIEGLMEHITGPDFPTGGIIY-GKSGIVDAYRTGKGRLHIRGKY 244 Query: 257 CVEEVGR-GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315 EE + G IV TEIPYQV K+R+IE+IAEL+ K++ + ++RDES +D + Sbjct: 245 HFEEDEKTGRTTIVFTEIPYQVNKARVIERIAELVKEKKLEGISELRDESDKDGMRIAID 304 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 R + ++++ ++F+ + +E F +NM L G+ P++M L I+ ++ HR+EV+ RR Sbjct: 305 LKRGENAEVIVNNLFLNTQLENSFSINMVCLDNGQ-PKLMNLKDIIAAFIRHRQEVVTRR 363 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN-------------------------- 409 + F ++ R IL+GL +A NID+II I+ Sbjct: 364 TMFELRKARERGHILEGLTVALANIDDIIETIKTSANPAEARERLQAGEWAGGGVIALLE 423 Query: 410 --------------EDKPKPVMVSR--FSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453 ED +P +S + L+ QV AIL LRL L LE+ ++ +E Sbjct: 424 KAGSVSVRPDEIEGEDPARPFGLSEQVYRLSPTQVAAILELRLHRLTGLEQDKLHAEYTE 483 Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIR-EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ 512 +L + ++ ++LN +N + IR E+ I + D RRT E SR D ++ Sbjct: 484 ILGQIAELTAILND----FNLLMGVIREELSLILQQYGD--ERRTQIVE-SRID--FCRE 534 Query: 513 AMIEKEPITVVISNRGWIRS--LKSHSVDL------SALHFKEGDSLKIALHAHTTDRIL 564 +I +E + + +S G+ ++ L + SA K+ D ++ + A +L Sbjct: 535 DLIPEEQVVLTVSQTGYAKTQPLSDYQAQRRGGRGKSATSMKDDDIIQHLIVASNHATVL 594 Query: 565 LLSTDGKAYTLPAGNL-LSGRG-HGEAIQLLIDLNHNQDI-----VTAFVYDSTCKLLVV 617 + GK Y L + + RG G + L+ L+ N+ I +T F+ + + + Sbjct: 595 CFTNVGKVYRLKVFEVPQASRGAKGRPMVNLLPLDANESITAILPLTEFLENH--YVFMA 652 Query: 618 SSKGNAFIVEESEIIANTR-KGKTFLKVSSEEKMKLVVKVTGDHVAVVGENR-KLLIFSI 675 ++ G V E E AN R G ++++ E+ + V G ++ N K + F+ Sbjct: 653 TASGTVKRV-ELEQFANIRSNGLRAIELNEEDTLIGVAITDGQQQIMLFSNEGKAIRFAE 711 Query: 676 DQIPEMSR-GKGVR 688 + M R KGVR Sbjct: 712 TDVRAMGRTAKGVR 725 >gi|225849212|ref|YP_002729376.1| DNA gyrase subunit alpha [Sulfurihydrogenibium azorense Az-Fu1] gi|225643258|gb|ACN98308.1| DNA gyrase, A subunit [Sulfurihydrogenibium azorense Az-Fu1] Length = 795 Score = 406 bits (1043), Expect = e-111, Method: Compositional matrix adjust. Identities = 215/490 (43%), Positives = 322/490 (65%), Gaps = 11/490 (2%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 E++K V + ++ Y+ YA+S I RAIPD+RDG KPV RRI+ AM E+GL +KK Sbjct: 2 EDIKKVPIEEEIKSAYIDYAMSVIAGRAIPDVRDGLKPVQRRILFAMYELGLLPNKPYKK 61 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 SAR+VGE +GK HPHGD SVYD+LVR+AQ F RYPLI GQGNFG+IDGD AA RYTEA Sbjct: 62 SARVVGETLGKFHPHGDTSVYDALVRMAQDFTMRYPLIDGQGNFGSIDGDPQAAMRYTEA 121 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 R+T++A +L+ +D++ VD ++ EP V PSKFPNL+ NGTSGIAVG+ATSIP H Sbjct: 122 RLTKLAVEMLEDIDKNTVDMVPNFDSSLEEPTVLPSKFPNLICNGTSGIAVGLATSIPPH 181 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 N E+ EA L P+ ++E+L ++I GPDFPTGGII S E I++ Y+ RG ++ Sbjct: 182 NFTEVAEALKYLAQFPDATVEELCQFIKGPDFPTGGIITNSHEEIIDIYKTARGSITIKG 241 Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVL 313 + +E++ +V+ EIPYQV K LI++IAEL+ + + D+RDES +RIV+ Sbjct: 242 KARIEKLPGNRQRVVIYEIPYQVNKVELIKRIAELVRTGKEKGISDLRDESDRTGIRIVI 301 Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373 K R DP+ +++ ++ + +E FP+N VL + + P+V+ L IL+E++ HR EV+ Sbjct: 302 ELK-RDADPEKVLKKLYKSTPLEKSFPVNFTVL-VDKQPKVLSLKEILQEFIKHRLEVIT 359 Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDA 430 RR+ F ++ + R+ I++GL++A N D++I I+R + + + ++ +R++LTE Q +A Sbjct: 360 RRTLFDLEKAENRLHIVEGLIVALENADKVIDIVRSSKDTSQARELLTTRYNLTETQANA 419 Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490 IL++RL LE ++K E L A+ E +L++ + +I I+E+ E+ SK + Sbjct: 420 ILDMRLARFTALETTKLKEEKKELEAQIENYKKILST---EEEKIKVFIQEMDEMLSKYS 476 Query: 491 DLGRRRTTFC 500 D R+TT Sbjct: 477 D--ERKTTIA 484 Score = 38.5 bits (88), Expect = 4.1, Method: Compositional matrix adjust. Identities = 46/170 (27%), Positives = 81/170 (47%), Gaps = 25/170 (14%) Query: 523 VISNRGWIRSL-------KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575 +I+ +G I+ + KSH + L+ EGD L +A+ I + YT Sbjct: 595 LITKKGIIKRMFDEDIFYKSHKHTVMPLN--EGDELAVAIADQNPSYIGI-------YTK 645 Query: 576 PAGNLLSGRGH----GEAIQLL--IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEES 629 A LL R G+ + + IDL+ N ++ +F+ D +L+ +SKG +VE+S Sbjct: 646 NADLLLFERNEVRVTGDKAKGVEGIDLDPNDEVAGSFLIDGHNYILIATSKGYMKLVEKS 705 Query: 630 EIIANTR--KGKTFLKVSSEEKMKLVVKV-TGDHVAVVGENRKLLIFSID 676 E R KG +K++ ++ + ++ V G+ V V ++ KLL +D Sbjct: 706 EFPIKKRGQKGLMAVKLNKDDYVVSMIPVDIGEDVLVQTKHGKLLKIKVD 755 >gi|77460299|ref|YP_349806.1| DNA gyrase subunit A [Pseudomonas fluorescens Pf0-1] gi|77384302|gb|ABA75815.1| DNA gyrase subunit A [Pseudomonas fluorescens Pf0-1] Length = 887 Score = 406 bits (1043), Expect = e-111, Method: Compositional matrix adjust. Identities = 238/603 (39%), Positives = 361/603 (59%), Gaps = 57/603 (9%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 V++ L++ YL YA+S I RA+PD RDG KPVHRR++ AMSE+G DF +KKSAR+V Sbjct: 11 VNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDFNKPYKKSARVV 70 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG++DGD+AAA RYTE RMT++ Sbjct: 71 GDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRYTEVRMTKL 130 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A +L + ++ VD+ Y+ + P V P++ PNLL NG+SGIAVGMAT+IP HN+ E+ Sbjct: 131 AHELLADLHKETVDWVPNYDGTELIPAVMPTRVPNLLVNGSSGIAVGMATNIPPHNLGEV 190 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 + LALIDNPE+++++L++YI GPDFPT II R I+E+YR GRG +RAR +E Sbjct: 191 IDGCLALIDNPELTVDELMQYIPGPDFPTAAII-NGRAGIIEAYRTGRGRIYMRARSIIE 249 Query: 260 EVGR--GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317 ++ + G IV+TE+PYQ+ K+RLIEKIAEL+ K++ + ++RDES +D V+ Sbjct: 250 DIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKLEGITELRDESDKDGMRVVIELR 309 Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377 R P++++ +++ + +++ F +N+ L GR P+++ L +L+ ++ HRREV+ RR+ Sbjct: 310 RGEVPEVILNNLYAQTQLQSVFGINIVALIDGR-PRILNLKDLLEAFVRHRREVVTRRTV 368 Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVS--------------- 419 F ++ R IL+G +A NID +IA+I+ P K +VS Sbjct: 369 FELRKARERGHILEGQAVALSNIDPVIALIKASPTPSEAKEALVSTPWESTAVVAMVERA 428 Query: 420 -------------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEK 460 ++ L+ Q AIL LRL L LE ++ +E +L + + Sbjct: 429 GADSCRPENLDPQYGLRDGKYFLSPEQAQAILELRLHRLTGLEHEKLLAEYQEILNQIGE 488 Query: 461 IDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI 520 + +LNS + I E+ ++ + RRT + +R D TL MI +E Sbjct: 489 LIRILNSAVRLMEVIREELEVIRAEYGDV-----RRTEILD-ARLD-LTLGD-MIPEEER 540 Query: 521 TVVISNRGWIRS--LKSHSVDL------SALHFKEGDSLKIALHAHTTDRILLLSTDGKA 572 V IS+ G+ ++ L ++ SA K+ D + L A++ +LL S+ GK Sbjct: 541 VVTISHGGYAKTQPLAAYQAQRRGGKGKSATGVKDEDYIAHLLVANSHTTLLLFSSKGKV 600 Query: 573 YTL 575 Y L Sbjct: 601 YWL 603 >gi|331005940|ref|ZP_08329286.1| DNA gyrase subunit A [gamma proteobacterium IMCC1989] gi|330420235|gb|EGG94555.1| DNA gyrase subunit A [gamma proteobacterium IMCC1989] Length = 869 Score = 406 bits (1043), Expect = e-111, Method: Compositional matrix adjust. Identities = 282/795 (35%), Positives = 430/795 (54%), Gaps = 94/795 (11%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 +V V++ L++ YL YA+S I RA+PD+RDG KPVHRR++ AMSE+ D+ A+KKS Sbjct: 7 DVSPVNIEDELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELNNDWNKAYKKS 66 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 AR+VG+VIGK HPHGD +VYD++VR+AQ F RYPLI GQGNFG+IDGDSAAA RYTE R Sbjct: 67 ARVVGDVIGKYHPHGDSAVYDTIVRMAQDFSLRYPLIDGQGNFGSIDGDSAAAMRYTEIR 126 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 M ++A +L ++++ VDF Y+ + P V P++ PNLL NG+SGIAVGMAT+IP HN Sbjct: 127 MKKLAHELLADLEKETVDFVPNYDGSEQIPSVLPTRVPNLLINGSSGIAVGMATNIPPHN 186 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 ++E+ LA I+N +I+I++L+E I GPDFPTG I R IV++YR GRG VRA+ Sbjct: 187 LKEVVRGCLAFIENEDITIDELMEIIPGPDFPTGATI-NGRAGIVQAYRTGRGRIYVRAK 245 Query: 256 WCVEEVGR-GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314 VE + I++TEIPYQ+ K++LIE+IAEL+ K+I + ++RDES +D+R+V+ Sbjct: 246 AHVERNDKTNKETIIITEIPYQLNKAKLIERIAELVKEKKIEGISELRDESTKDIRVVIE 305 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K + D+++ +++ + ME F +N+ L G+ P+++ L +L+ ++ HRREV+ R Sbjct: 306 LKRGEIG-DVILNNLYAQTQMEGVFGINVVALVDGQ-PKILNLKQLLECFVRHRREVVTR 363 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSR----------- 420 R+ + ++ R IL+GL +A NIDE+I +I+N P ++SR Sbjct: 364 RTIYLLRKARERGHILEGLAVAIANIDEVITLIKNSPSPAEAREGLLSRGWESASVAQFL 423 Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457 + L+ Q AIL LRL L +E ++ E +A Sbjct: 424 ERAGADACRPEGLGPEFGLRDEKYYLSPAQAQAILELRLHRLTGMEHDKLLDEYQEKVAR 483 Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517 + +L S + I E+ E+++ + G R T + S+ D + +I + Sbjct: 484 IAEFLEILGSSTRLMEVIREELEEIEKNY------GDERRTDIQSSKRDLTI--EDLITE 535 Query: 518 EPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569 E V IS+ G+ ++ + +A K+ D ++ L A T D IL + Sbjct: 536 EDRVVTISHGGYAKTQALSDYQAQRRGGTGKAATSVKDEDFVEHLLIASTHDTILCFTNA 595 Query: 570 GKAYTLPAGNL-LSGR-GHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAF 624 GK Y L + L+GR G I L+ L+ ++ I + YD + + ++ G Sbjct: 596 GKVYWLKVFQIPLAGRQSRGRPIINLLPLDESERITSILPVREYDEDHFIFMATANGT-- 653 Query: 625 IVEESEIIANTRKGKTFLK-VSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR 683 V+++ + R + L+ + EE LV AV N +++FS S Sbjct: 654 -VKKTPLTQFARPRTSGLRAIDLEEDNHLV------GTAVTDGNSDVMLFS-------SE 699 Query: 684 GKGVRL--QSYKDGGISD--VICFKICEGLTWIDSA-----GRSYNRSENDLLGWLGKRG 734 GK VR + G + V ++ EG I G+ SEN G+ GKR Sbjct: 700 GKAVRFNENDVRSMGRTSRGVRGIRLAEGYEVISMVLPTEDGKVLTVSEN---GY-GKRT 755 Query: 735 GVGSLVPKGFPRSGK 749 V KG R+GK Sbjct: 756 KVDEYATKG--RAGK 768 >gi|330964797|gb|EGH65057.1| DNA gyrase subunit A [Pseudomonas syringae pv. actinidiae str. M302091] Length = 928 Score = 406 bits (1043), Expect = e-111, Method: Compositional matrix adjust. Identities = 244/639 (38%), Positives = 371/639 (58%), Gaps = 59/639 (9%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 V++ L++ YL YA+S I RA+PD RDG KPVHRR++ AMSE+G D+ +KKSAR+V Sbjct: 11 VNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDWNKPYKKSARVV 70 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG++DGD+AAA RYTE RMT++ Sbjct: 71 GDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRYTEVRMTKL 130 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A +L + ++ VD+ Y+ + P V P++ PNLL NG+SGIAVGMAT+IP HN+ E+ Sbjct: 131 AHELLADLHKETVDWVPNYDGTEMIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHNLGEV 190 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 + LALIDNPE++I++L++YI GPDFPT II R I+E+YR GRG +RAR VE Sbjct: 191 IDGCLALIDNPELTIDELMQYIPGPDFPTAAII-NGRAGIIEAYRTGRGRIYMRARSIVE 249 Query: 260 EVGR--GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317 ++ + G IV+TE+PYQ+ K+RLIEKIAEL+ K++ + ++RDES +D V+ Sbjct: 250 DLDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKLEGITELRDESDKDGMRVVIELR 309 Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377 R P++++ +++ + +++ F +N+ L GR P+++ L +L+ ++ HRREV+ RR+ Sbjct: 310 RGEVPEVVLNNLYAQTQLQSVFGINIVALIDGR-PRILNLKDLLEAFVRHRREVVTRRTV 368 Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV----------------MVSR- 420 F ++ R IL+G +A NID +IA+I+ P MV R Sbjct: 369 FELRKARERGHILEGQAVALSNIDPVIALIKASPTPAEAKEALIKTPWESSAVVEMVERA 428 Query: 421 --------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEK 460 + L+ Q AIL LRL L LE ++ E +LA+ + Sbjct: 429 GADSCRPENLDPQYGLREGKYFLSPEQAQAILELRLHRLTGLEHEKLLGEYQEILAQIGE 488 Query: 461 IDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI 520 + +LNS + I E+ ++ + + RRT + +R D TL + E+E + Sbjct: 489 LIRILNSATRLMEVIREELELIRAEYGDA-----RRTEILD-ARLD-LTLGDLITEEERV 541 Query: 521 TVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKA 572 V IS+ G+ ++ + SA K+ D + L A++ +L+ S+ GK Sbjct: 542 -VTISHGGYAKTQPLAVYQAQRRGGKGKSATGIKDEDYIAHLLVANSHTTLLMFSSKGKV 600 Query: 573 YTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609 Y L + S G + L+ L+ + I T D Sbjct: 601 YWLKTYEIPEASRAARGRPLVNLLPLSEGEYITTMLPVD 639 >gi|226943698|ref|YP_002798771.1| DNA gyrase subunit A [Azotobacter vinelandii DJ] gi|226718625|gb|ACO77796.1| DNA gyrase, A subunit [Azotobacter vinelandii DJ] Length = 910 Score = 406 bits (1043), Expect = e-111, Method: Compositional matrix adjust. Identities = 236/603 (39%), Positives = 363/603 (60%), Gaps = 57/603 (9%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 V++ L++ YL YA+S I RA+PD RDG KPVHRR++ AMSE+G D+ +KKSAR+V Sbjct: 11 VNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDWNKPYKKSARVV 70 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG++DGD+AAA RYTE RM ++ Sbjct: 71 GDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRYTEVRMAKL 130 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A +L +D++ VD+ Y+ + P V P++ PNLL NG+SGIAVGMAT+IP HN+ E+ Sbjct: 131 AHELLADLDKETVDWVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHNLTEV 190 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 + LALID+PE++I++L++YI GPDFPT GII R I+E+YR GRG +RAR +E Sbjct: 191 IDGCLALIDDPELTIDQLMQYIPGPDFPTAGII-NGRAGIIEAYRTGRGRIYIRARAEIE 249 Query: 260 EVGR--GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317 ++ + G IVVTE+PYQ+ K+RLIEKIAEL+ K+I + ++RDES +D V+ Sbjct: 250 DIDKVGGRQQIVVTELPYQLNKARLIEKIAELVKEKKIEGITELRDESDKDGMRVVIELR 309 Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377 R P++++ +++ + +++ F +N+ L G+ P+++ L +L+ ++ HRREV+ RR+ Sbjct: 310 RGEVPEVVLNNLYAQTQLQSVFGINVVALVDGQ-PRLLNLKDMLEVFVRHRREVVTRRTV 368 Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK----------------PVMVSR- 420 + ++ R IL+G +A NID +I +I+ P MV R Sbjct: 369 YELRKARERGHILEGQAVALSNIDPVIELIKASPTPAEAKERLIATAWASSAVEAMVERA 428 Query: 421 --------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEK 460 + L+ Q AIL+LRL L LE ++ +E +L + + Sbjct: 429 GADACRPEELGPQYGLRDGKYYLSPEQAQAILDLRLHRLTGLEHEKLLAEYQEILGQIGE 488 Query: 461 IDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI 520 + +L S ++ I E+ ++K F + RRT S+ D T+ + E+E + Sbjct: 489 LIRILTSPERLLEVIREELEKIKAEFGDA-----RRTEIV-ASQVD-LTIADLITEEERV 541 Query: 521 TVVISNRGWIRS--LKSHSVDL------SALHFKEGDSLKIALHAHTTDRILLLSTDGKA 572 V IS+ G+ +S L ++ +A K+ D ++ L A++ +LL S+ GK Sbjct: 542 -VTISHGGYAKSQPLAAYQAQRRGGKGKAATGVKDEDYVEHLLVANSHTTLLLFSSKGKV 600 Query: 573 YTL 575 Y L Sbjct: 601 YWL 603 >gi|148377826|ref|YP_001256702.1| DNA gyrase subunit A [Mycoplasma agalactiae PG2] gi|148291872|emb|CAL59263.1| DNA gyrase subunit A [Mycoplasma agalactiae PG2] Length = 919 Score = 405 bits (1042), Expect = e-111, Method: Compositional matrix adjust. Identities = 215/508 (42%), Positives = 327/508 (64%), Gaps = 14/508 (2%) Query: 30 YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89 +L YA+S I RA+PD RDG KPVHRRI++ MSE+G+ G +KSARIVG+V+GK HPH Sbjct: 88 FLDYAMSVIVSRALPDARDGLKPVHRRILYDMSELGITSGTQHRKSARIVGDVLGKYHPH 147 Query: 90 GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDE 149 GD SVY+++VR+AQ F RYPLI GNFG+IDGD AAA RYTEARM++VA L+L+G+ + Sbjct: 148 GDSSVYEAMVRMAQDFSMRYPLIDSHGNFGSIDGDQAAAMRYTEARMSKVAALMLEGIKK 207 Query: 150 DAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDN 209 D VDF D Y+ + EP V PS+FPNLL +G SGIAVGMATSIP HN+ E +A +AL N Sbjct: 208 DTVDFVDNYDATEKEPSVLPSRFPNLLVSGGSGIAVGMATSIPPHNLAETIDATIALAKN 267 Query: 210 PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIV 269 PEISI +++E++ GPDFPTG +I+ ++ I E+Y G+G VR+ +E + G I+ Sbjct: 268 PEISISEIMEFLPGPDFPTGAMIMGTK-GIKEAYETGKGSISVRSIAKIEHLQNGKSRII 326 Query: 270 VTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKNRSLDPDLLMES 328 V+EIPY+++K+ +IEKIA+L+ K I + D+RDES + +RI++ K + P++++ Sbjct: 327 VSEIPYEIKKTLIIEKIAQLMKDKTIEGIADLRDESNRNGIRIIIDIKKGEV-PEIILNK 385 Query: 329 IFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVE 388 ++ + +++ + +N L G P+++ + L+ +L H+ V+ RR F + R+ Sbjct: 386 LYRQTPLQSNYNVNFVALVDGE-PKLLNIKYALEVYLKHQENVVTRRLRFDLNKAKDRMH 444 Query: 389 ILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEY 445 IL+GL IA NIDE+I II++ + + + +RF L+E Q AI+++RL L L Sbjct: 445 ILEGLKIAVENIDEVIKIIKSSKTDQDAQSNLSTRFDLSEKQTKAIVDMRLGRLTGLAVD 504 Query: 446 QIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRA 505 + E+ NL AE E+I ++L + I E+ E+K ++ RRT + A Sbjct: 505 SMIEEMQNLAAEIERITNILANRDLLIELIIDELTEIKNKYA-----DERRTVIDKNISA 559 Query: 506 DKATLQQAMIEKEPITVVISNRGWIRSL 533 + + +I K I + S +G+++ + Sbjct: 560 --SINDEDLISKRDIVITTSTKGYVKRI 585 >gi|167623965|ref|YP_001674259.1| DNA gyrase subunit A [Shewanella halifaxensis HAW-EB4] gi|167353987|gb|ABZ76600.1| DNA gyrase, A subunit [Shewanella halifaxensis HAW-EB4] Length = 908 Score = 405 bits (1042), Expect = e-111, Method: Compositional matrix adjust. Identities = 242/606 (39%), Positives = 353/606 (58%), Gaps = 58/606 (9%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 ++ +++ L+ YL YA+S I RA+PD+RDG KPVHRR++ AMSE+ D+ +KKS Sbjct: 7 SITPINIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELKNDWNKPYKKS 66 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 AR+VG+VIGK HPHGD +VYD++VRLAQPF RYPLI GQGNFG++DGD+AAA RYTE R Sbjct: 67 ARVVGDVIGKYHPHGDTAVYDTIVRLAQPFSMRYPLIDGQGNFGSVDGDAAAAMRYTEIR 126 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 M +VA +L ++++ VDF Y+ + P V P++ P LL NG+SGIAVGMAT+IP HN Sbjct: 127 MDKVAHQLLADLEKETVDFVPNYDGTEFIPAVLPTRIPTLLVNGSSGIAVGMATNIPPHN 186 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 + E+ LALI++P +SIE+L+EYI GPDFPT II R+ I+++Y+ GRG +R+R Sbjct: 187 INEVISGCLALIEDPALSIEQLMEYIPGPDFPTAAII-NGRKGIIDAYKTGRGRAVMRSR 245 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314 +EE G I+V EIPYQV K+RLIEKIAEL+ K+I + +RDES +D +RIV+ Sbjct: 246 AEIEE-ENGRERIIVHEIPYQVNKARLIEKIAELVKDKKIEGISGLRDESDKDGMRIVIE 304 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K R ++++ +++ + M+ F +NM L+ G+ P++ L +L+ ++ HRREV+ R Sbjct: 305 IK-RGEVGEVVLNNLYAQTQMQCSFGINMVALTNGQ-PKLFNLKEMLECFILHRREVVTR 362 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV---------------- 418 R+ F ++ R IL+ L +A NID IIA+I+ P V Sbjct: 363 RTVFELRKARERAHILEALAVALANIDPIIALIKASPTPAEAKVKLVAEGWELGHVKGML 422 Query: 419 ---------------------SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457 ++ LTE Q AIL LRL L LE +I +E + LL Sbjct: 423 EKAGDDAARPEWLEPEFGIRDDKYYLTEQQAQAILELRLHRLTGLEHDKIIAEYEELLEI 482 Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517 + +L S ++ I E+ EV F G R T + D + + +I + Sbjct: 483 IAALLFILGSPQRLMEVIKEELEEVLANF------GDERRTVINANEVDMSL--EDLINE 534 Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569 E + V +S+ G+ + + + +A K+ D ++ L A+T D IL S Sbjct: 535 EDVVVTLSHLGYAKYQVLSDYQAQRRGGKGKAATKVKDEDFVEKLLVANTHDTILCFSDF 594 Query: 570 GKAYTL 575 GK Y L Sbjct: 595 GKMYWL 600 >gi|257461234|ref|ZP_05626331.1| DNA gyrase, A subunit [Campylobacter gracilis RM3268] gi|257441262|gb|EEV16408.1| DNA gyrase, A subunit [Campylobacter gracilis RM3268] Length = 914 Score = 405 bits (1042), Expect = e-110, Method: Compositional matrix adjust. Identities = 240/612 (39%), Positives = 378/612 (61%), Gaps = 32/612 (5%) Query: 9 SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68 SN + + + + +++ YL Y++S I RA+PD RDG KPVHRRI++AM+++G+ Sbjct: 3 SNMFENQEIIDIDVEESIKTSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMNDLGVGS 62 Query: 69 GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128 +KKSARIVG+VIGK HPHGD +VYD+LVR+AQ F R P + GQGNFG+IDGD AAA Sbjct: 63 RQPYKKSARIVGDVIGKYHPHGDTAVYDALVRMAQSFSMRIPSVDGQGNFGSIDGDGAAA 122 Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188 RYTEARMT +AE +L+ +D++ VDF Y+E +EP V P++ PNLL NG+SGIAVGMA Sbjct: 123 MRYTEARMTPLAEELLKDLDKETVDFVPNYDESLNEPDVLPARVPNLLLNGSSGIAVGMA 182 Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248 T+IP H++ E+ L L++N S+E+++ I GPDFPTGGII ++ I+E+Y+ GRG Sbjct: 183 TNIPPHSLDELVGGLLILLENKNASLEEIMGEIKGPDFPTGGIIY-GKKGIIEAYKTGRG 241 Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308 ++RA+ +E+ IV+ E+PYQ K+RLIE+IA+L+ K+I + ++RDES D Sbjct: 242 RVKIRAKTHIEKKASKD-VIVIDELPYQTNKARLIEQIADLVKEKQIEGISEVRDESDRD 300 Query: 309 -VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367 +R+V+ K ++ ++++ ++F + ME F + M + G+ P++ L +LK +L H Sbjct: 301 GIRVVIELKRDAM-SEIVLNNLFKQTTMEATFGVIMLAID-GKEPKIFTLIELLKLFLNH 358 Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLT 424 R+ V+ RR+ F +Q R IL+GL IA NIDE+I +IRN + + ++SRF L+ Sbjct: 359 RKTVIIRRTIFELQKARARAHILEGLKIALDNIDEVIDVIRNSADTNVARENLMSRFDLS 418 Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484 E Q AIL++RL L LE +I+ EL +LAE +++D++L S + I E+ E+K+ Sbjct: 419 EAQSGAILDMRLSRLTGLEREKIEEELKEILAEIKRLDAILKSEELIEGIIKDELLEIKD 478 Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS--- 541 F + E+ + + +I E + V I++RG+I+ + S + + Sbjct: 479 KF--------KCPRITEIVDDYEDIDIEDLIANENMVVTITHRGYIKRVPSKTYEKQKRG 530 Query: 542 -----ALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQ 591 A+ + D ++ ++T D ++ ++ G K Y +P G S G+A+ Sbjct: 531 GKGRVAVTTYDDDFIESFFTSNTHDTLMFITDRGQLYWLKVYKIPEG---SRTAKGKAVV 587 Query: 592 LLIDLNHNQDIV 603 LI L ++ I+ Sbjct: 588 NLIQLGADEKIM 599 >gi|298500212|ref|ZP_07010017.1| DNA topoisomerase IV, A subunit [Vibrio cholerae MAK 757] gi|297540905|gb|EFH76959.1| DNA topoisomerase IV, A subunit [Vibrio cholerae MAK 757] Length = 655 Score = 405 bits (1042), Expect = e-110, Method: Compositional matrix adjust. Identities = 226/631 (35%), Positives = 373/631 (59%), Gaps = 22/631 (3%) Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186 AA+ EA++++ AE++L + + VD++ ++ EP + P++ P++L NG +GIAVG Sbjct: 15 AAHALYEAKLSKFAEILLSELGQGTVDWQPNFDGTMQEPKMLPARLPHILLNGVTGIAVG 74 Query: 187 MATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLG 246 MAT IP HNV+E+ +A + LIDNP + L++Y+ GPDFPT I+ + + YR G Sbjct: 75 MATDIPPHNVREVADATIHLIDNPNAPLTDLMQYVKGPDFPTEAEIITPTVELEKIYRSG 134 Query: 247 RGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA 306 RG ++RA WC E GS IV+T +P+QV ++L+E+IA + AK++P++ED+RDES Sbjct: 135 RGSIKMRAVWCKE----GS-DIVITALPHQVSGAKLLEQIAAQMRAKKLPMVEDLRDESD 189 Query: 307 ED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364 + RIV+ P++ +D DLLM +F +D+E F +N+N++ + PQV L IL EW Sbjct: 190 HENPTRIVIVPRSNRVDCDLLMNHLFASTDLEKSFRVNLNMIGLDNRPQVKGLVQILSEW 249 Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLT 424 ++ RRE + R +R+ + R+ IL+GLLIAYLN+DE+I IIRNED PK V+++RF LT Sbjct: 250 ISFRRETVRSRLQYRLDKVLARLHILQGLLIAYLNLDEVIEIIRNEDDPKAVLMARFDLT 309 Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484 + Q DAIL+ +LR L KLEE +I+ E D L E++K++ LL S ++ N + EI+ + Sbjct: 310 DIQADAILDTKLRHLAKLEEMKIRGEQDELEKERKKLEELLGSERRLNNLLKKEIKADAD 369 Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH 544 F RR+ E A KA ++ ++ E ITVV+S +GWIR K H+VD +L+ Sbjct: 370 KFGDD-----RRSPLVEREEA-KALTERDLMPSEAITVVLSEKGWIRHAKGHNVDCQSLN 423 Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVT 604 +K GD+ + + + L +DG++Y+L + L S RG GE I +++ I Sbjct: 424 YKAGDNYLTHACGKSNQQAVFLGSDGRSYSLESHTLPSARGQGEPITGRLNVAEGTTIRQ 483 Query: 605 AFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDHV 661 + + LV S G F+ + ++++ R GK + + ++ +++ + D + Sbjct: 484 VVMGEEDQLWLVGSDAGYGFVCKGDDLLSKNRSGKALINLPENSEVMTPQVIADLDNDEI 543 Query: 662 AVVGENRKLLIFSIDQIPEMSRGKG---VRLQSYKDGGISDVIC--FKICEGLTWIDSAG 716 + ++L+F I +P++S+GKG + + + K +V+ + +G + AG Sbjct: 544 LAITNQGRMLLFPIKDLPQLSKGKGNKIINIPAAKAKTREEVLSNLMVLPQGASITLYAG 603 Query: 717 -RSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746 R +DL + G+RG G+L+P+G R Sbjct: 604 KRKLGLKVSDLDNFRGERGRRGALLPRGLQR 634 >gi|153815429|ref|ZP_01968097.1| hypothetical protein RUMTOR_01664 [Ruminococcus torques ATCC 27756] gi|145847288|gb|EDK24206.1| hypothetical protein RUMTOR_01664 [Ruminococcus torques ATCC 27756] Length = 853 Score = 405 bits (1042), Expect = e-110, Method: Compositional matrix adjust. Identities = 246/666 (36%), Positives = 383/666 (57%), Gaps = 36/666 (5%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 + V V L+ +E Y+ YA+S I RA+PD+RDG KPV RRI+++M E+ +K Sbjct: 7 DKVHEVDLKKTMETSYIDYAMSVIAARALPDVRDGLKPVQRRILYSMIELNNGPDKPHRK 66 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 ARIVG+ +GK HPHGD S+Y +LV LAQ + RYPL+ G GNFG++DGD AAA RYTEA Sbjct: 67 CARIVGDTMGKYHPHGDSSIYGALVNLAQEWSTRYPLVDGHGNFGSVDGDGAAAMRYTEA 126 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 R+++++ + +++D VDF ++E + EPVV PS+FPNLL NGTSGIAVGMAT+IP H Sbjct: 127 RLSKISMEMTADINKDTVDFVPNFDETEKEPVVLPSRFPNLLVNGTSGIAVGMATNIPPH 186 Query: 195 NVQEICEAALALID-----NPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249 N++E+ A + +ID N E SIE +L+ I GPDFPTG I+ +R I E+YR GRG Sbjct: 187 NLREVINAVVKIIDDQIDENGETSIEDILQIIKGPDFPTGAEILGTR-GIEEAYRTGRGK 245 Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309 RVRA +E + G I+VTE+P+ V K+RLIEKIAEL+ K++ + D+ D+S+ + Sbjct: 246 IRVRAVTNIEPMQNGKNRIIVTELPFMVNKARLIEKIAELVRDKKVDGITDLSDQSSREG 305 Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369 + R ++P++++ ++ + ++ F + M L + P+VM + +LK +L H+ Sbjct: 306 MRICIELRRDVNPNVILNQLYKHTQLQDTFGVIMLAL-VNNEPKVMNILDMLKYYLKHQE 364 Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTEN 426 EV+ RR+ + + + R IL+GLLIA NIDE+I IIR N + K ++SRF L+E Sbjct: 365 EVVTRRTKYDLNKAEERAHILQGLLIALDNIDEVIKIIRGSKNVQEAKAELISRFDLSEV 424 Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486 Q AI+++RLR+L LE ++++E L+ + E+ ++L K I KEI Sbjct: 425 QAQAIVDMRLRALTGLEREKLEAEYAELMKKIEEYRAILADRKLLLGVIR------KEIL 478 Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD------- 539 S G R T D + + +I +E + + ++N G+I+ + + Sbjct: 479 VISEKYGDERRTHIGYDEFDIS--MEDLIPRENVVITVTNMGYIKRMSMDTFKSQNRGGK 536 Query: 540 -LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEAIQLLIDL 596 + + E D ++ + I+ + G+ Y L A + +GR G A+ L+ L Sbjct: 537 GIKGMQTLEEDFIRELFVTTSHHYIMFFTNKGRVYRLKAYEIPEAGRTARGTAVINLLQL 596 Query: 597 NHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS--EEKMK 651 ++ I Y+ L + + KG +V+++ I KT L S E+ + Sbjct: 597 MPDEKITATIPIKEYEDGKYLFMATKKG---LVKKTPIQDYMNVRKTGLAAISLREDDLL 653 Query: 652 LVVKVT 657 + VKVT Sbjct: 654 IEVKVT 659 >gi|116750116|ref|YP_846803.1| DNA gyrase subunit A [Syntrophobacter fumaroxidans MPOB] gi|116699180|gb|ABK18368.1| DNA gyrase subunit A [Syntrophobacter fumaroxidans MPOB] Length = 813 Score = 405 bits (1041), Expect = e-110, Method: Compositional matrix adjust. Identities = 235/605 (38%), Positives = 368/605 (60%), Gaps = 26/605 (4%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 ++K +++ ++ YL YA+S I RAIPD+RDG KPVHRRI +AM E+ DF +KKS Sbjct: 2 DLKTINIEDEIKLSYLDYAMSVIIGRAIPDVRDGLKPVHRRIFYAMHELRNDFNKPYKKS 61 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 ARIVG+VIGK HPHGD +VYD+LVR+AQ F RY L+ GQGNFG++DGD AA RYTE R Sbjct: 62 ARIVGDVIGKYHPHGDSAVYDALVRMAQDFSMRYQLVDGQGNFGSVDGDPPAAMRYTEVR 121 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 M ++ ++ ++++ + F+ Y+ EPVV P++ PNLL NG+SGIAVGMAT+IP HN Sbjct: 122 MNRIGHEFMRDIEKETIPFQPNYDNTILEPVVLPARIPNLLLNGSSGIAVGMATNIPPHN 181 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 ++E+C LA++D+P+I++ L+ YI GPDFPT G I I ++Y GRG ++RAR Sbjct: 182 LRELCAGLLAMLDDPDITVRDLMRYIPGPDFPTAGFICGC-VGIKDAYETGRGTIKMRAR 240 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLF 314 VEE GR + +++TE+PYQV K+RL+E+IAEL+ K+I ++DIRDES E +R+VL Sbjct: 241 VEVEESGRRNH-LIITELPYQVNKARLLERIAELVKQKKIEGIQDIRDESDREGMRVVLT 299 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 + +P ++ ++ + +E+ F + M + + P+V+ L G+L +L RR V+ R Sbjct: 300 LRQGD-EPRVIENQLYKHTALESSFGVIMLAVVDNK-PEVLNLKGVLNNFLDFRRLVIIR 357 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVDAI 431 R+ + + ++R IL+GL A ++DE+I++IR P K ++ RF ++ Q AI Sbjct: 358 RTQYELAQAEKRAHILEGLKRALDHLDEVISLIRAAKTPPEAKQGLMERFEFSDVQAQAI 417 Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491 L +RL+ L LE +I E ++ E E++ +L+S +Q+ E E+KE+ + D Sbjct: 418 LEMRLQRLTGLEREKIIEEYQEIIKEIERLRQILSSAA-LVDQVIRE--EIKELTDQYGD 474 Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSAL 543 L R+T ++ A + ++ +I E + V IS G+I RS + + + Sbjct: 475 L--RKTEI--LAEAGELCIED-LIAAEEMVVTISRAGYIKRTPLSVYRSQRRGGKGRTGM 529 Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQD 601 +E D + A T D +L+ + G+ Y L + + G+AI L+ + ++ Sbjct: 530 STREEDLVTSLFTASTHDYLLVFTNRGQVYWLKVYEIPEVGPSALGKAIVNLLPVQKDER 589 Query: 602 IVTAF 606 I T Sbjct: 590 IQTVL 594 >gi|330960545|gb|EGH60805.1| DNA gyrase subunit A [Pseudomonas syringae pv. maculicola str. ES4326] Length = 928 Score = 405 bits (1041), Expect = e-110, Method: Compositional matrix adjust. Identities = 243/639 (38%), Positives = 370/639 (57%), Gaps = 59/639 (9%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 V++ L++ YL YA+S I RA+PD RDG KPVHRR++ AMSE+G D+ +KKSAR+V Sbjct: 11 VNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDWNKPYKKSARVV 70 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG++DGD+AAA RYTE RMT++ Sbjct: 71 GDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRYTEVRMTKL 130 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A +L + ++ VD+ Y+ + P V P++ PNLL NG+SGIAVGMAT+IP HN+ E+ Sbjct: 131 AHELLADLHKETVDWVPNYDGTEMIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHNLGEV 190 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 + LALIDNPE++I++L++YI GPDFPT II R I+E+YR GRG +RAR VE Sbjct: 191 IDGCLALIDNPELTIDELMQYIPGPDFPTAAII-NGRAGIIEAYRTGRGRIYMRARSIVE 249 Query: 260 EVGR--GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317 ++ + G IV+TE+PYQ+ K+RLIEKIAEL+ K++ + ++RDES +D V+ Sbjct: 250 DIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKLEGITELRDESDKDGMRVVIELR 309 Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377 R P++++ +++ + +++ F +N+ L GR P+++ L +L+ ++ HRREV+ RR+ Sbjct: 310 RGEVPEVVLNNLYAQTQLQSVFGINIVALIDGR-PRILNLKDLLEAFVRHRREVVTRRTV 368 Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV----------------MVSR- 420 F ++ R IL+G +A NID +IA+I+ P MV R Sbjct: 369 FELRKARERGHILEGQAVALSNIDPVIALIKASPTPAEAKEGLIKTPWESSAVVEMVERA 428 Query: 421 --------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEK 460 + L+ Q AIL LRL L LE ++ E +L + + Sbjct: 429 GADSCRPENLDPQYGLRDGKYFLSPEQAQAILELRLHRLTGLEHEKLLGEYQEILTQIGE 488 Query: 461 IDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI 520 + +LNS + I E+ ++ + + RRT + +R D TL + E+E + Sbjct: 489 LIRILNSATRLMEVIREELELIRSEYGDA-----RRTEILD-ARLD-LTLGDLITEEERV 541 Query: 521 TVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKA 572 V IS+ G+ ++ + SA K+ D + L A++ +L+ S+ GK Sbjct: 542 -VTISHGGYAKTQPLAVYQAQRRGGKGKSATGIKDEDYIAHLLVANSHTTLLMFSSKGKV 600 Query: 573 YTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609 Y L + S G + L+ L+ + I T D Sbjct: 601 YWLKTYEIPEASRAARGRPLVNLLPLSEGEYITTMLPVD 639 >gi|326800751|ref|YP_004318570.1| DNA gyrase subunit alpha [Sphingobacterium sp. 21] gi|326551515|gb|ADZ79900.1| DNA gyrase, A subunit [Sphingobacterium sp. 21] Length = 862 Score = 405 bits (1041), Expect = e-110, Method: Compositional matrix adjust. Identities = 227/617 (36%), Positives = 364/617 (58%), Gaps = 31/617 (5%) Query: 4 DNISNSNTLVEEN--VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61 D N + LV N + +S+ ++ Y+ Y++S I RA+PD+RDG KPVHRR+++ M Sbjct: 3 DETENDDNLVPANDRIIPISIEEEMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGM 62 Query: 62 SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121 ++G+ G +KKSARIVG+V+GK HPHGD SVYD++VR+AQ + RYPL+ GQGNFG+I Sbjct: 63 LDLGVTSGKPYKKSARIVGDVLGKYHPHGDSSVYDTMVRMAQEWSLRYPLVDGQGNFGSI 122 Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181 DGDS AA RYTEAR+ ++AE +L +++D +D++ +++ EP V P+K PNLL NG S Sbjct: 123 DGDSPAAMRYTEARLKRIAEEMLADINKDTIDYQLNFDDSLQEPTVLPTKIPNLLVNGAS 182 Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241 GIAVGMAT++ HN+ E+ + +A IDN +I++ +L+++I PDFPTGG+I + + Sbjct: 183 GIAVGMATNMAPHNLSEVIDGTVAYIDNRDITVAELMQHIKAPDFPTGGVIY-GYAGVQD 241 Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301 ++ GRG +RA+ +E I+VTEIPYQV K+ +I++ A+L+ K+I + I Sbjct: 242 AFETGRGRVVMRAKAEIEVSKNDKETIIVTEIPYQVNKAEMIKRTADLVNEKKIEGISAI 301 Query: 302 RDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361 RDES D +++ R + +++ ++F + ++T F +N L GR P ++ L ++ Sbjct: 302 RDESDRDGMRIVYDIKRDANASIVLNNLFKYTALQTSFSVNNIALVHGR-PMLLNLKDMI 360 Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MV 418 ++ HR EV+ RR+ F + ++R IL+GLLIA ++DE+I +IR+ + P+ ++ Sbjct: 361 HHFVEHRHEVIIRRTKFELAEAEKRAHILEGLLIALDHLDEVIQLIRSSETPEDARVGLM 420 Query: 419 SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE 478 +F L++ Q AIL++ LR L LE +IK E L+ E + S+L + I E Sbjct: 421 EKFGLSDIQARAILDMTLRRLTGLERDKIKEEYAELMKTIEYLKSVLADEGLRMKIIKDE 480 Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV 538 + EVKE F RR+ V A+ ++ I+ E I + IS+ G+++ Sbjct: 481 LLEVKEKFGDE-----RRSQI--VHSAEDMRMED-FIDDEEIVITISHEGYVKRTPLTEY 532 Query: 539 DLSAL--------HFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRG 585 L A KE D + + A + +L + G +A+ +P G S Sbjct: 533 RLQARGGKGSLGSTTKEEDFTEHIITASAHNYMLFFTEAGRCFWLRAFEIPEGTRTS--- 589 Query: 586 HGEAIQLLIDLNHNQDI 602 G AIQ +I++ + I Sbjct: 590 RGRAIQNIINIPKEEKI 606 >gi|313679781|ref|YP_004057520.1| DNA gyrase subunit a [Oceanithermus profundus DSM 14977] gi|313152496|gb|ADR36347.1| DNA gyrase subunit A [Oceanithermus profundus DSM 14977] Length = 804 Score = 405 bits (1041), Expect = e-110, Method: Compositional matrix adjust. Identities = 265/722 (36%), Positives = 415/722 (57%), Gaps = 53/722 (7%) Query: 26 LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85 +++ ++ YA+S I RA+PD+RDG KPV RRI++AM + GL G KSA +VGEVI K Sbjct: 13 VKQSFINYAMSVIVNRALPDVRDGLKPVQRRILYAMYQEGLLPGRKHSKSAGVVGEVIKK 72 Query: 86 LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145 HPHGDQ+VYD++VRLAQ + RYPLI GQGNFG+IDGD AAAYRYTEAR++ +A +L+ Sbjct: 73 YHPHGDQAVYDAMVRLAQEWNLRYPLIDGQGNFGSIDGDPAAAYRYTEARLSPIALELLR 132 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 +D+D VDF + ++ EP V P+ FPNLLANG++GIAVGMATSIP HN+ E+ A A Sbjct: 133 DIDKDTVDFVENFDGTAEEPTVLPAGFPNLLANGSTGIAVGMATSIPPHNLGELINALAA 192 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265 +ID+PEI+++ +++++ GPDFPTGG + +R + +Y G+G R+RAR EE G G Sbjct: 193 MIDDPEITLDGVMQHLPGPDFPTGGRL--NRVGLKRAYETGKGSLRLRARVRTEERG-GR 249 Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFPKNRSLDPDL 324 +VVTEIPYQV K+ LI +IA L+ AK++ + +RDES + +RIV+ K R +PD+ Sbjct: 250 KMLVVTEIPYQVNKASLISQIASLVRAKKLEDISGLRDESDRQGMRIVIELK-RGANPDV 308 Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384 ++ +F ++++T F +NM + G P+V+PL +++ +L HRREV+ RR+ F ++ + Sbjct: 309 VLNQLFKQTNLQTSFTINMLAIVNGE-PRVLPLLAMMRAYLDHRREVVVRRTRFDLKKAE 367 Query: 385 RRVEILKGLLIAYLNIDEIIAII---RNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRK 441 R +L+GLLIA ++DE+IA+I R+ + K ++ RF+L+E Q AIL++RL+ L Sbjct: 368 DRAHVLEGLLIALDHLDEVIALIRASRDGAEAKAGLMQRFALSEVQAQAILDMRLQRLTG 427 Query: 442 LEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCE 501 LE ++++E L + ++L + W + E+ ++E F+ RRT E Sbjct: 428 LEREKLQAEYRELQETIAYLRAILADETRLWGVVKDELLAIREKFADE-----RRTLITE 482 Query: 502 VSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKI 553 + + +IE EP+ + ++ G++ R+ + A K+ D Sbjct: 483 FAEGFNP---EDLIEDEPMVITMTAAGFLKRTPLEDYRAQGRGGMGAKAGRTKDEDEATR 539 Query: 554 ALHAHTTDRILLLSTDGKAY-----TLPAGNLLSGRGH---------GEAIQLLIDLNHN 599 A D +L + G+ Y LP + H GE I+ L+ L Sbjct: 540 VFVAQMHDDLLFFTNRGRVYREKVFELPEAQRTARGTHVKSFLPLEEGEEIKALLSLRSL 599 Query: 600 QDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIA-NTRKGKTFLKVSSEEKMKLVVKVTG 658 D FV+ + ++ ++ + + S +IA N +G + V + +G Sbjct: 600 TD-PGYFVFATRKGVVKKTAIRDYQNLNASGLIAINLVEGDDLVDVR--------IAGSG 650 Query: 659 DHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGG--ISDVICFKICEG-LTWIDS 714 V + K + F +D++ R +GVR K+G +S ++ K EG L I S Sbjct: 651 AQVVMATRGGKAIRFPLDEVRATGRASQGVRGIRLKEGDEVVSLIVVPKDWEGDLLAISS 710 Query: 715 AG 716 G Sbjct: 711 HG 712 >gi|85705334|ref|ZP_01036433.1| DNA gyrase, subunit A [Roseovarius sp. 217] gi|85670207|gb|EAQ25069.1| DNA gyrase, subunit A [Roseovarius sp. 217] Length = 899 Score = 405 bits (1041), Expect = e-110, Method: Compositional matrix adjust. Identities = 236/612 (38%), Positives = 361/612 (58%), Gaps = 51/612 (8%) Query: 19 AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78 +VS+ ++ YL YA+S I RAIPDLRDG KPVHRRI++AM E G ++KSAR Sbjct: 15 SVSITHEMKTSYLDYAMSVIVSRAIPDLRDGLKPVHRRILYAMHEGGNTHDKPYRKSARA 74 Query: 79 VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138 VG+V+GK HPHGD ++YD+LVR+AQ F PL+ GQGNFG++DGD+AAA RYTE RM + Sbjct: 75 VGDVMGKYHPHGDSAIYDALVRMAQDFSMSLPLLDGQGNFGSMDGDNAAAMRYTEVRMDK 134 Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198 A +L +++D V+F+D Y+ +D EP V P++FPN+L NG GIAVGMAT+IP HN+ E Sbjct: 135 PAAYLLADIEKDTVNFQDNYDGKDREPTVLPARFPNMLVNGAGGIAVGMATNIPPHNLGE 194 Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258 + +A LALI+NP++ E L++YI GPDFPTGG+++ R ++Y GRG +RA+ V Sbjct: 195 VVDATLALIENPDLESEDLIQYIPGPDFPTGGLML-GRSGARKAYLEGRGSVIIRAKTRV 253 Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKN 317 EE+ + + I++ EIPYQV K+ +IE+IAE KRI + ++DES + VR+V+ K Sbjct: 254 EEIRKDRYAIIIDEIPYQVNKATMIERIAEAAREKRIEGISHVQDESDRNGVRVVIELK- 312 Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377 R ++++ +F + M+T F NM L+ G+ P+ + L L ++ R EV+ RR++ Sbjct: 313 RDATAEVVLNQLFRFTPMQTYFGCNMLALNGGK-PEQLTLHRFLSLFIVFREEVVARRTA 371 Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---------------------------- 409 F ++ R +L GL +A N+DE++A IR Sbjct: 372 FELRRARERAHVLCGLAVAVSNVDEVVATIRASADAAEARLKLMERRWPAREILPYIALI 431 Query: 410 EDKPKPVMV-SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSG 468 +D P ++L+E Q AIL+LRL+ L +L ++ EL +L + ++ ++L S Sbjct: 432 DDPSHPANEDGTYNLSEVQARAILDLRLQRLTQLGVKEVTDELQDLAGKIKEYLAILASR 491 Query: 469 KQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRG 528 ++ I+ E+REV+++F+ RRT + S + +IE+E + V +++ G Sbjct: 492 ERIMQIISDELREVRDLFAVP-----RRTQIVDWS---GDMEDEDLIEREDMVVTVTSGG 543 Query: 529 WI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL 580 +I R+ K LS + K+ D + A+T ++L +T G Y L L Sbjct: 544 YIKRTALADFRAQKRGGKGLSGMATKDEDVVTTLFVANTHTQLLFFTTGGMVYKLKTWRL 603 Query: 581 -LSGR-GHGEAI 590 L GR G+AI Sbjct: 604 PLGGRTSKGKAI 615 >gi|189499116|ref|YP_001958586.1| DNA gyrase, A subunit [Chlorobium phaeobacteroides BS1] gi|189494557|gb|ACE03105.1| DNA gyrase, A subunit [Chlorobium phaeobacteroides BS1] Length = 828 Score = 405 bits (1041), Expect = e-110, Method: Compositional matrix adjust. Identities = 234/638 (36%), Positives = 375/638 (58%), Gaps = 38/638 (5%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 +S+ + + YL Y++S I RA+PD+RDG KPVHRR++ M E+GL G +KKSAR+V Sbjct: 9 ISIEDEMRDSYLDYSMSVIVSRALPDVRDGLKPVHRRVLFGMHELGLQAGKGYKKSARVV 68 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 GEV+GK HPHGD +VYDSLVR+ Q F RYPLI GQGNFG++DGDS AA RYTE RM + Sbjct: 69 GEVLGKFHPHGDTAVYDSLVRMVQDFSLRYPLIDGQGNFGSVDGDSPAAMRYTEVRMKNI 128 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A +L+ ++++ V F +++ EP V PS PN+L NG SGIAVGMAT+IP N+ E+ Sbjct: 129 AGEMLKDLEKETVGFSLNFDDSLEEPTVLPSAMPNMLVNGASGIAVGMATNIPPQNLSEV 188 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 +A+I+NPEI+I++++E+II PDFPT GII E + ++Y GRG +RAR VE Sbjct: 189 VNGLIAMIENPEITIDEIMEHIIAPDFPTAGIIY-GYEGVKQAYHTGRGKVVIRARAVVE 247 Query: 260 EVGR-GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318 + G I+VTE+PYQV K RLIEKI ELI K+I + DIRDES D ++ R Sbjct: 248 VTQKNGRESIIVTELPYQVNKVRLIEKIVELIHLKKIEGIADIRDESDRDGMRLVIELKR 307 Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378 +++ ++ + M+ F + + L G VP+V+ L +++ +L HR E++ RR+++ Sbjct: 308 DAVAKVVLNHLYKHTPMQDTFGVILLALVDG-VPKVLNLKEMMEAYLKHRNEIVLRRTTY 366 Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAILNLR 435 + A +++ IL+GL I N+DE+I+ IR N + ++ +F LTE Q A+L +R Sbjct: 367 ELAAAEKKAHILEGLKICLDNLDEVISTIRESPNAGVAQEKLMEKFGLTELQSKAVLEMR 426 Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495 L+ L +E +I+ + + LA E++ +L + +++ I E+ +VK+++ R Sbjct: 427 LQRLTGMERDKIEKDYNETLALIEELRFILANPEKRMQIIKDELLKVKQVYGDE-----R 481 Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DLSALHFKE 547 RT E+ + + MI +E + + I++ +I+ ++ + Sbjct: 482 RT---EIRPQEGEFSIEDMIAQEDVVITITHETFIKRFPVSGYRRQARGGKGVTGAQARH 538 Query: 548 GDSLKIALHAHTTDRILLLSTDG-----KAYTLP-AGNLLSGRGHGEAIQLLIDLNHNQD 601 D ++ A T + IL + G K Y +P AG GR ++ +++L + Sbjct: 539 EDFVEHMFVASTHNYILFFTNKGRCHWLKVYEIPEAGRAARGR----SLANIMELQPGEK 594 Query: 602 I---VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR 636 I + +D +++ ++KG+ ++++EI A +R Sbjct: 595 IKAYINVKTFDDPLFIIMATAKGS---IKKTEIEAFSR 629 >gi|169632683|ref|YP_001706419.1| DNA gyrase, subunit A, type II topoisomerase [Acinetobacter baumannii SDF] gi|169151475|emb|CAP00226.1| DNA gyrase, subunit A, type II topoisomerase [Acinetobacter baumannii] Length = 904 Score = 405 bits (1041), Expect = e-110, Method: Compositional matrix adjust. Identities = 237/612 (38%), Positives = 359/612 (58%), Gaps = 65/612 (10%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 ++ +++ L+ YL YA+S I RA+PD+RDG KPVHRR+++AM E+G D+ A+KKSA Sbjct: 6 IRPIAIEDELKHSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMHELGNDYNKAYKKSA 65 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD +VY+++VR+AQ F RY L+ GQGNFG+IDGDSAAA RYTE RM Sbjct: 66 RVVGDVIGKYHPHGDSAVYETIVRMAQDFSLRYLLVDGQGNFGSIDGDSAAAMRYTEVRM 125 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 T++A +L +++D VD+ Y+ + P V P++ PNLL NG +GIAVGMAT++ HN+ Sbjct: 126 TKLAHELLADLEKDTVDWEGNYDGSERIPEVLPTRVPNLLINGAAGIAVGMATNMAPHNM 185 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ A LA DNP ISIE L+EYI GPDFPT GII + IV++YR G+G +R ++ Sbjct: 186 TEVVNACLAYADNPNISIEGLMEYITGPDFPTSGIIY-GKSGIVDAYRTGKGRLHIRGKY 244 Query: 257 CVEEVGR-GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLF 314 EE + G IV TEIPYQV K+R+IE+IAEL+ K++ + ++RDES E +RI + Sbjct: 245 HFEEDEKTGRTTIVFTEIPYQVNKARVIERIAELVKEKKLEGISELRDESDKEGMRIAID 304 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K R + ++++ ++F+ + +E F +NM L G+ P++M L I+ ++ HR+EV+ R Sbjct: 305 LK-RGENAEVVVNNLFLNTQLENSFSINMVCLDNGQ-PKLMNLKDIIAAFIRHRQEVVTR 362 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN------------------------- 409 R+ F ++ R IL+GL +A NIDEII I+ Sbjct: 363 RTMFELRKARERGHILEGLTVALANIDEIIETIKTSANPAEARERLLAGEWAGGGVVALL 422 Query: 410 ---------------EDKPKPVMVSR--FSLTENQVDAILNLRLRSLRKLEEYQIKSELD 452 ED +P +S + L+ QV AIL LRL L LE+ ++ +E Sbjct: 423 EKAGAISVRPDEIEGEDPNRPFGLSDSIYRLSPTQVGAILELRLHRLTGLEQDKLHAEYT 482 Query: 453 NLLAEKEKIDSLLNSGKQQWNQIACEIR-EVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511 +L + ++ ++LN +N + IR E+ ++ + D RRT E SR D + Sbjct: 483 EILGQIAELTAILN----DFNLLMGVIREELAQVLQQYGDA--RRTEIVE-SRVD--FCR 533 Query: 512 QAMIEKEPITVVISNRGWIRS--LKSHSVDL------SALHFKEGDSLKIALHAHTTDRI 563 + +I +E + + +S G+ ++ L + SA K+ D ++ + A + Sbjct: 534 EDLIPEEQVVLTVSQTGYAKTQPLSDYQAQRRGGRGKSATSMKDDDFIQHLIVASNHATV 593 Query: 564 LLLSTDGKAYTL 575 L + GK Y L Sbjct: 594 LCFTNVGKVYRL 605 >gi|237799018|ref|ZP_04587479.1| DNA gyrase subunit A [Pseudomonas syringae pv. oryzae str. 1_6] gi|331021872|gb|EGI01929.1| DNA gyrase subunit A [Pseudomonas syringae pv. oryzae str. 1_6] Length = 928 Score = 405 bits (1041), Expect = e-110, Method: Compositional matrix adjust. Identities = 236/603 (39%), Positives = 358/603 (59%), Gaps = 57/603 (9%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 V++ L++ YL YA+S I RA+PD RDG KPVHRR++ AMSE+G D+ +KKSAR+V Sbjct: 11 VNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDWNKPYKKSARVV 70 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG++DGD+AAA RYTE RMT++ Sbjct: 71 GDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRYTEVRMTKL 130 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A +L + ++ VD+ Y+ + P V P++ PNLL NG+SGIAVGMAT+IP HN+ E+ Sbjct: 131 AHELLADLHKETVDWVPNYDGTEMIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHNLGEV 190 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 + LALIDNPE++I++L++YI GPDFPT II R I+E+YR GRG +RAR VE Sbjct: 191 IDGCLALIDNPELTIDELMQYIPGPDFPTAAII-NGRAGIIEAYRTGRGRIYMRARSIVE 249 Query: 260 EVGR--GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317 ++ + G IV+TE+PYQ+ K+RLIEKIAEL+ K++ + ++RDES +D V+ Sbjct: 250 DIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKLEGITELRDESDKDGMRVVIELR 309 Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377 R P++++ +++ + +++ F +N+ L GR P+++ L +L+ ++ HRREV+ RR+ Sbjct: 310 RGEVPEVILNNLYAQTQLQSVFGINIVALIDGR-PRILNLKDLLEAFVRHRREVVTRRTV 368 Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV----------------MVSR- 420 F ++ R IL+G +A NID +IA+I+ P MV R Sbjct: 369 FELRKARERGHILEGQAVALSNIDPVIALIKASPTPAEAKEALIKTPWESSAVVEMVERA 428 Query: 421 --------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEK 460 + L+ Q AIL LRL L LE ++ E +L + + Sbjct: 429 GADSCRPENLDPQYGLREGKYFLSPEQAQAILELRLHRLTGLEHEKLLGEYQEILTQIGE 488 Query: 461 IDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI 520 + +LNS + I E+ ++ + + RRT + +R D TL + E+E + Sbjct: 489 LIRILNSATRLMEVIREELELIRSEYGDA-----RRTEILD-ARLD-LTLGDLITEEERV 541 Query: 521 TVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKA 572 V IS+ G+ ++ + SA K+ D + L A++ +L+ S+ GK Sbjct: 542 -VTISHGGYAKTQPLAVYQAQRRGGKGKSATGIKDEDYIAHLLVANSHTTLLMFSSKGKV 600 Query: 573 YTL 575 Y L Sbjct: 601 YWL 603 >gi|199598228|ref|ZP_03211649.1| DNA gyrase, A subunit [Lactobacillus rhamnosus HN001] gi|199590831|gb|EDY98916.1| DNA gyrase, A subunit [Lactobacillus rhamnosus HN001] Length = 870 Score = 405 bits (1041), Expect = e-110, Method: Compositional matrix adjust. Identities = 242/712 (33%), Positives = 404/712 (56%), Gaps = 53/712 (7%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 E + V+L + + +L YA+S I RA+PD+RDG KPV RRI++ M+E+G+ +K Sbjct: 6 ESRITNVNLGETMRKSFLEYAMSVIVARALPDVRDGLKPVQRRILYGMNELGVTPDKPYK 65 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSARIVG+V+GK HPHGD S+Y+ LVR+AQ F RY L+ G GNFG++DGD AAA RYTE Sbjct: 66 KSARIVGDVMGKYHPHGDSSIYEGLVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAMRYTE 125 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 ARM+++A +L+ +++D +DF+D Y+ + EPVV P++FPNLL NG +GIAVGM T+IP Sbjct: 126 ARMSKIAVEMLRDINKDTIDFQDNYDGTEKEPVVLPARFPNLLVNGATGIAVGMTTNIPP 185 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E A L+D+P+ + L++ + GPDFPTGG+++ + I +Y GRG +R Sbjct: 186 HNLSETISALHVLMDHPDATTADLMQALPGPDFPTGGVVM-GKSGIRHAYETGRGTIVLR 244 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313 + V+ G IV+TEIPY V K++++E+IA+L+ K+I + +RDES D ++ Sbjct: 245 GKVDVQTEKSGRERIVITEIPYMVNKAKMVERIADLVHEKKIDGIVTLRDESDRDGMRIV 304 Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373 R +++ +++ L+ ++T F NM + G P+V+ L IL+ +L H+ V+ Sbjct: 305 IDVRRDASASVILNNLYKLTPLQTGFSFNMVAIVNG-APKVLSLKQILQYYLDHQENVIR 363 Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDA 430 RR+ + ++ R IL+GL IA +IDEII IIR+ DK K +++ +F+L++ Q A Sbjct: 364 RRTQYDLKKAKAREHILEGLRIALDHIDEIITIIRSSETGDKAKVILMDKFNLSDKQSQA 423 Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490 IL++RL L LE +++SE ++ A +L ++ I E+ ++++ F Sbjct: 424 ILDMRLVRLTGLERDKVESEYKDVEAAIADYTDILAKPERVHQIIYDELLDIQKKFGD-- 481 Query: 491 DLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSLKSHSVD--------LS 541 +RRT E+ + +L+ + +IE+E + + +S+ G+++ L + + Sbjct: 482 ---KRRT---ELLVGEVLSLEDEDLIEQEDVVITLSHNGYVKRLATSEFKTQNRGGRGIQ 535 Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAY---------------TLPAGNLLSGRGH 586 ++ + D ++ + T D +L + GK Y +P NLL G G Sbjct: 536 GMNVHDDDFVEHLISTSTHDVLLFFTNKGKVYRSKGYEIPEYSRTAKGIPIINLL-GVGA 594 Query: 587 GEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR-KGKTFLKVS 645 GE IQ +I++ H D +++ T +V + F AN R G L + Sbjct: 595 GEKIQTVINV-HEGDNDDRYLFFVTQNGVVKRTPVKEF--------ANIRSNGLIALNLK 645 Query: 646 SEEKMKLVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSRG----KGVRLQSY 692 ++++ V+ +G ++G + + F + M R +G+RL+ + Sbjct: 646 DQDELNNVILTSGQDNILIGTHLGYSVAFKEQDVRSMGRTATGVRGIRLRDH 697 >gi|330507224|ref|YP_004383652.1| DNA gyrase subunit A [Methanosaeta concilii GP-6] gi|328928032|gb|AEB67834.1| DNA gyrase, A subunit [Methanosaeta concilii GP-6] Length = 797 Score = 405 bits (1040), Expect = e-110, Method: Compositional matrix adjust. Identities = 244/639 (38%), Positives = 378/639 (59%), Gaps = 37/639 (5%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 V++ ++ Y+ YA+S I RA+PD+RDG KPVHRRI++AM E G+ +KKSAR+V Sbjct: 6 VNITEEMKSSYIDYAMSVIVGRALPDVRDGLKPVHRRILYAMYEQGMTHDQPYKKSARVV 65 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+V+GK HPHGD ++Y+++VR+AQ F RYPLI GQGNFG+IDGD AAA RYTE R++++ Sbjct: 66 GDVMGKYHPHGDAAIYETMVRMAQTFSMRYPLIDGQGNFGSIDGDPAAAMRYTEVRLSKI 125 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 AE +L ++++ VDF Y+ EP V P K PNLL NG++GIAVGMAT+IP HN+ E+ Sbjct: 126 AEEMLADIEKNTVDFVPNYDGSLKEPTVLPGKLPNLLLNGSTGIAVGMATNIPPHNLNEL 185 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 A + LIDNP+ ++ +L+ Y+ GPDFPTGG IV R I +Y G+G ++A+ +E Sbjct: 186 AGAIIHLIDNPQATVGELMHYLPGPDFPTGGYIV-GRAGIESAYLTGKGSIIMQAKSEIE 244 Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFPKNR 318 E G S I+ +E+PYQV K++LIE +AE++ R+ + D+RDES E +R+V+ K Sbjct: 245 E-GAKSTRIIFSELPYQVNKAKLIEDMAEMVKGGRLEGISDLRDESDKEGIRMVVDIKT- 302 Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378 + ++++ + + ++T + +N VL G +P+++ L L++++ +R V+ RR+ F Sbjct: 303 GFNANVVLNQLHKHTALQTSYGINNMVLVDG-MPRILSLKETLEQYIYYRSIVVERRTRF 361 Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVDAILNLR 435 + A ++R IL GLLIA NIDE+I II+ P ++ F L+E Q AIL++R Sbjct: 362 ELDAAEKRAHILAGLLIALKNIDEVIRIIKAAPTPAEARDGLIEAFLLSEEQAKAILDMR 421 Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR-EVKEIFSKSTDLGR 494 L+ L LE+ +I SE AE EK+ + L +I I+ E+ E+ SK D Sbjct: 422 LQRLTGLEQEKIVSE----AAELEKLIAHLRQILSSNLEILSIIKDELTELISKYGD--E 475 Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS--------ALHFK 546 RRT E AD + +I++E + V I++ G+I+ ++ + K Sbjct: 476 RRTQIIE---ADGEVTNEDLIQEEEVAVTITSSGYIKRQPVNTYRMQRRGGRGVIGAETK 532 Query: 547 EGDSLKIALHAHTTDRILLLSTDGKA-----YTLPAGNLLSGRGHGEAIQLLIDLNHNQD 601 + + A T D +L + GKA Y +PA L G++I L+ L ++ Sbjct: 533 TEEFVTDVSTASTKDYLLFFTDKGKAHWLKVYEVPA---LGRAARGKSIVNLLQLEPDER 589 Query: 602 IVTAFVYDS--TCKLLVVSSKGNAFIVEESEIIANTRKG 638 I A S +++V+ GN + + +N RKG Sbjct: 590 IAGAIPVKSFQAGYIVLVTRSGN-IVKMPLQAFSNPRKG 627 >gi|15602706|ref|NP_245778.1| DNA gyrase subunit A [Pasteurella multocida subsp. multocida str. Pm70] gi|12721149|gb|AAK02925.1| GyrA [Pasteurella multocida subsp. multocida str. Pm70] Length = 899 Score = 405 bits (1040), Expect = e-110, Method: Compositional matrix adjust. Identities = 250/663 (37%), Positives = 378/663 (57%), Gaps = 69/663 (10%) Query: 13 VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72 + +++ +S+ L+ YL YA+S I RA+PD+RDG KPVHRR++ AM E G + + Sbjct: 15 MHQDISPISIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEGGNAYNKPY 74 Query: 73 KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132 +KSARIVG+VIGK HPHGD +VYD+LVR+AQPF RY L+ GQGNFG+IDGD+AAA RYT Sbjct: 75 RKSARIVGDVIGKYHPHGDSAVYDTLVRMAQPFSLRYMLVDGQGNFGSIDGDAAAAMRYT 134 Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192 EARMT++A +L +D++ V+F Y+ + P V P+K P LL NG+SGIAVGMAT+IP Sbjct: 135 EARMTKIAHELLADLDKETVNFVPNYDGSEQIPEVLPTKVPALLVNGSSGIAVGMATNIP 194 Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252 HN+ E+ + LA I+N EISI++L+ YI GPDFPT +I R+ I E+Y+ GRG V Sbjct: 195 PHNLGEVLDGCLAYIENNEISIDELMTYIPGPDFPTAALI-NGRKGIEEAYKTGRGKIYV 253 Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312 RA+ VE +G IVV EIPYQV K++LIEKIA+L+ K++ + I D S +D + Sbjct: 254 RAKAEVETDEKGGETIVVHEIPYQVNKAKLIEKIADLVKEKKVEGISAITDLSDKDGMRI 313 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 R ++++ +++ L+ ++ F +N+ L G+ P+++ L +++ ++ HRREV+ Sbjct: 314 EIKIKRDAVGEVVLNNLYALTQLQVTFGINIVALDKGQ-PKLLNLKQLIEAFVLHRREVV 372 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR------------ 420 RR+ + ++ R IL+GL IA N+D II +IRN P P R Sbjct: 373 TRRTVYELRKARERAHILEGLAIALANVDPIIELIRN--APNPESAKRALLAQAWELGHV 430 Query: 421 ---------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453 + LTE Q AIL+LRL+ L L +I E Sbjct: 431 SQMLAATGVDAARPEDLEEQYGIRDGMYYLTEVQAQAILDLRLQKLTNLGHDEILDEYKK 490 Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513 LL ++ +L S ++ I E+ +++E F+ RRT E++ + + Sbjct: 491 LLDVIGELLHILRSPERLMEVIREELEQIREQFNDP-----RRT---EITASSADINLED 542 Query: 514 MIEKEPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565 +I +E + V +S+ G+++ + + SA KE D ++ L A+T D IL Sbjct: 543 LIAQEDVVVTLSHEGYVKYQPLTDYEAQRRGGKGKSAAKTKEEDFIERLLVANTHDTILC 602 Query: 566 LSTDGKAYTLPAGNL-LSGRG-HGEAIQLLIDLNHNQDI-----VTAFVYDSTCKLLVVS 618 S+ G+ Y L L + RG G I ++ L+ N+ I VTA+ D K +V++ Sbjct: 603 FSSRGRLYWLKVYQLPQASRGARGRPIVNILPLDENERITAILPVTAYEED---KFVVMA 659 Query: 619 SKG 621 + G Sbjct: 660 TAG 662 >gi|283954577|ref|ZP_06372096.1| DNA gyrase subunit A [Campylobacter jejuni subsp. jejuni 414] gi|283793981|gb|EFC32731.1| DNA gyrase subunit A [Campylobacter jejuni subsp. jejuni 414] Length = 862 Score = 405 bits (1040), Expect = e-110, Method: Compositional matrix adjust. Identities = 237/607 (39%), Positives = 375/607 (61%), Gaps = 32/607 (5%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 + +++ V + +++ YL Y++S I RA+PD RDG KPVHRRI++AM F Sbjct: 8 DSDIELVDIENSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFV 67 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSARIVG VIG+ HPHGD +VYD+LVR+AQ F RY I+GQGNFG+IDGDSAAA RYTE Sbjct: 68 KSARIVGAVIGRYHPHGDTAVYDALVRMAQDFSMRYSTITGQGNFGSIDGDSAAAMRYTE 127 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 A+M++++ +L+ +D+D VDF Y+ +SEP V PS+ PNLL NG+SGIAVGMAT+IP Sbjct: 128 AKMSKLSHELLKDIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPP 187 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 H++ E+ + L L+DN + ++E+++++I GPDFPTGGII ++ I+E+YR GRG +VR Sbjct: 188 HSLNELIDGLLYLLDNKDANLEEIMQFIKGPDFPTGGIIY-GKKGIIEAYRTGRGRVKVR 246 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIV 312 A+ +E+ IV+ E+PYQ K+RLIE+IAEL+ K+I + ++RDES E +R+V Sbjct: 247 AKIHIEK-KTNKDVIVIDELPYQTNKARLIEQIAELVKEKQIEGISEVRDESNKEGIRVV 305 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 + K R + ++++ ++F + ME+ F + M + + P++ L +L +L HR+ V+ Sbjct: 306 IELK-REVMSEIVLNNLFKSTTMESTFGVIMLAIH-NKEPKIFSLLELLNLFLTHRKTVI 363 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVD 429 RR+ F +Q R IL+GL IA NIDE+IA+I+N + +V++F L+E Q + Sbjct: 364 IRRTIFELQKARARAHILEGLKIALDNIDEVIALIKNSSDNNIARDSLVAKFGLSELQAN 423 Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489 AIL+++L L LE +I++EL L+ E +++ +L S N I E++E++ F Sbjct: 424 AILDMKLGRLTGLEREKIENELAELMKEIARLEEILKSEILLENLIRDELKEIRNKF--- 480 Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS-------- 541 D+ R ++ + +I E + V I++RG+I+ + S + Sbjct: 481 -DVPR----ITQIEDDYDDIDIEDLIPNENMVVTITHRGYIKRVPSKQYEKQKRGGKGKL 535 Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDL 596 A+ + D ++ A+T D ++ ++ G K Y +P G S G+A+ LI+L Sbjct: 536 AITTYDDDFIESFFTANTHDTLMFVTDRGQLYWLKVYKIPEG---SRTAKGKAVVNLINL 592 Query: 597 NHNQDIV 603 + I+ Sbjct: 593 QAEEKIM 599 >gi|330723497|gb|AEC45867.1| DNA gyrase subunit A [Mycoplasma hyorhinis MCLD] Length = 877 Score = 405 bits (1040), Expect = e-110, Method: Compositional matrix adjust. Identities = 266/784 (33%), Positives = 428/784 (54%), Gaps = 87/784 (11%) Query: 9 SNTLVEENVKAVSLRFALEE---RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65 S+ L+E + ++ EE +L YA+S I RA+PD+RDG KPVHRRI+H M+E+G Sbjct: 62 SSQLIESEADNIVPKYISEEVRTSFLEYAMSVIISRALPDVRDGLKPVHRRILHCMNELG 121 Query: 66 LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125 + A+KKSARIVG+V+GK HPHGD SVYDS+VR++Q F RYPLI G GNFG+IDGD Sbjct: 122 ITHSVAYKKSARIVGDVLGKYHPHGDASVYDSMVRMSQDFALRYPLIDGHGNFGSIDGDE 181 Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185 AAA RYTEARM+++A L+++ + ++ VDF Y+ + EP V P++FPNLL +G SGIAV Sbjct: 182 AAAMRYTEARMSKIASLMVEDIKKNTVDFVPNYDGSEQEPQVLPARFPNLLVSGVSGIAV 241 Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245 GMAT IP HN++E+ E + L NP+IS+++L +++ PDFPTG I+ + I ++Y Sbjct: 242 GMATKIPPHNLKEVIETFILLAQNPDISVQELAKHLPAPDFPTGATILGT-SGIRQAYET 300 Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305 GRG F +R++ +E G I+V EIPY+V+K ++IEK+ +L+ K+I L+D+RDE+ Sbjct: 301 GRGAFVLRSKAKIETFSSGKSKIIVYEIPYEVKKPQIIEKVVQLVRDKKIQGLKDVRDET 360 Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365 V+F + P++++ ++ +D++ + +NM L G +P+V+ L IL ++L Sbjct: 361 NRKGIRVVFDVKKGFSPEIILNQLYKETDLQITYNINMLALVNG-IPKVLNLKDILYQYL 419 Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFS 422 H+ EV+ R F ++ R IL G+ IA NIDE+I IIR ++ + + + RF Sbjct: 420 LHQEEVVTRGLQFDLKKAKERHNILLGIKIAVENIDEVIKIIRASKSDAEAQTTLGQRFD 479 Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482 L E Q AI+++RL L L ++ +E+ L E E+I S++NS + I +++ Sbjct: 480 LNEAQTKAIVDMRLGRLTSLAIEKLIAEIKELEEEIERITSIINSHDKLIELIVNNHKKI 539 Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL-- 540 E ++ RRT S + + +I+++ + + ++ +I+ + + Sbjct: 540 IESYADD-----RRTEIVHGSIG--QIVDEDLIKEQKVVLTLTKNNYIKRINLDEYRMQN 592 Query: 541 -------SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQ 591 +A +K+ D+LK L A T +L+L++ + + L + LS + G Sbjct: 593 RGGTGSSTATTYKD-DNLKNILVASTHSDLLILTSKARIFRLRTHQIPDLSKQAKGVPFI 651 Query: 592 LLIDLNHNQDIVTAFVY-----DSTCKLLVVSSKG------------------------- 621 LI + ++DIV+ V D L+ VS G Sbjct: 652 NLIPIEKDEDIVSLLVTQENYEDDNLYLVTVSKLGIIKKTSLSLYKRISKNGLIALNLKE 711 Query: 622 -----NAFI-VEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLL---- 671 AFI EESEII G++ ++ +++ L K G +GEN ++ Sbjct: 712 NDELLTAFITTEESEIIIGASNGRS-VRFDNQDFRSLSRKSMGVKGITLGENEVVVGASS 770 Query: 672 ------IF-----------SIDQIPEMSR-GKGV-RLQSYKDGGISDVICFKICEGLTWI 712 +F ID+ + +R GKGV L++ K G ++ + C K E + + Sbjct: 771 TDQGSTVFVLGQEGYGKKTHIDEYRKTARGGKGVITLKTEKAGNLAFISCVKGDEEILIL 830 Query: 713 DSAG 716 G Sbjct: 831 TKQG 834 >gi|27904671|ref|NP_777797.1| DNA gyrase subunit A [Buchnera aphidicola str. Bp (Baizongia pistaciae)] gi|31076739|sp|Q89AS3|GYRA_BUCBP RecName: Full=DNA gyrase subunit A gi|27904068|gb|AAO26902.1| DNA gyrase subunit A [Buchnera aphidicola str. Bp (Baizongia pistaciae)] Length = 847 Score = 405 bits (1040), Expect = e-110, Method: Compositional matrix adjust. Identities = 247/652 (37%), Positives = 371/652 (56%), Gaps = 71/652 (10%) Query: 26 LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85 L+ YL YA+S I RA+PD+RDG KPVHRRI+ AM + D+ +KKSARIVG+VIGK Sbjct: 17 LKNSYLDYAMSVIIGRALPDVRDGLKPVHRRILFAMKVLNNDWNKTYKKSARIVGDVIGK 76 Query: 86 LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145 HPHGD +VYD++VR+AQPF RY LI GQGNFG+IDGDSAAA RYTE RM+++A +L Sbjct: 77 YHPHGDTAVYDAIVRMAQPFSLRYVLIDGQGNFGSIDGDSAAAMRYTEIRMSKIAYELLN 136 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 +D++ V F Y+ + P V P+K PNLL NG+SGIAVGMAT+IP HN++E+ LA Sbjct: 137 DLDKNTVSFFSNYDGTEKIPEVLPAKIPNLLINGSSGIAVGMATNIPPHNIKEVINGCLA 196 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265 ID+ I+++KL+E+I GPDFPT G+I + I ++Y+ G+G +RA+ +E + Sbjct: 197 FIDDQNITLKKLMEHIPGPDFPTAGLI-NGKRGIEKAYKTGKGKIYIRAKSIIEIQKKTK 255 Query: 266 WCIVVT-EIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFPKNRSLDPD 323 ++ E+PYQV K+R+I+ IA L+ K+I + +RDES E +RIV+ K + + Sbjct: 256 KKSIIIYELPYQVNKARVIKGIANLVKEKKIEGITTLRDESDKEGMRIVIEIK-KETKAE 314 Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383 +++ ++ L+ +E F +NM L G+ P+VM L IL ++ HRR+++ RRS F + I Sbjct: 315 IILNQLYSLTQLEISFGINMVALIHGQ-PKVMTLKEILNAFINHRRKIIMRRSLFELNKI 373 Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRN---------------------------------- 409 +++ IL+GL+I+ NID II +I+ Sbjct: 374 RKKIHILEGLIISLDNIDLIINLIKKSSTLEEAKNKLKTYHWYSKHAQYTQILKKNAHSL 433 Query: 410 ---EDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466 + K +P+ +F LT Q+ AIL LRL+ L LE ++ SE L ++++L Sbjct: 434 TPYDKKLRPIDTQKFFLTPEQIQAILELRLQKLTHLEHKKLISEYKQLFKTSNNLENILK 493 Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526 + N I +I + E+ + G +R T V+ +D T +I KE + + +S Sbjct: 494 N-----NNILTKIMK-DELIKIRDNFGDKRRTKINVNYSDINT--SDLINKENVVITLSY 545 Query: 527 RGWIRS--LKSHSVDLS------ALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAY 573 G+++ L S+ A+ KE D ++ L A+T D IL S+ G K Y Sbjct: 546 SGYVKYQLLSSYEAQKRGGKGKLAVKTKEEDFIENLLVANTHDIILCFSSKGILYWMKVY 605 Query: 574 TLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV----YDSTCKLLVVSSKG 621 LP S G I L+ L+ N+ I TA + Y + + + +SKG Sbjct: 606 QLPEA---SRHARGRPIVNLLPLSSNERI-TAILPISEYKDSINIFMATSKG 653 >gi|261868281|ref|YP_003256203.1| DNA gyrase subunit A [Aggregatibacter actinomycetemcomitans D11S-1] gi|261413613|gb|ACX82984.1| DNA gyrase, A subunit [Aggregatibacter actinomycetemcomitans D11S-1] Length = 887 Score = 405 bits (1040), Expect = e-110, Method: Compositional matrix adjust. Identities = 252/662 (38%), Positives = 380/662 (57%), Gaps = 71/662 (10%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 +++ VSL L+ YL YA+S I RA+PD+RDG KPVHRR++ AM E G + ++K Sbjct: 6 QDITPVSLEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEGGNLYNKPYRK 65 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 SARIVG+VIGK HPHGD +VYD+LVR+AQPF RY L+ GQGNFG++DGD+ AA RYTEA Sbjct: 66 SARIVGDVIGKYHPHGDSAVYDTLVRMAQPFSLRYMLVDGQGNFGSVDGDAPAAMRYTEA 125 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 RMT++A +L +D++ V+F Y+ + P V P+K P LL NG+SGIAVGMAT+IP H Sbjct: 126 RMTKIAHELLADLDKETVNFVPNYDGSEMIPEVLPTKVPALLVNGSSGIAVGMATNIPPH 185 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 N+ E+ + LA I+N +I+I++L+ +I GPDFPT +I R+ I E+Y+ GRG VRA Sbjct: 186 NLGEVLDGCLAYIENNDITIDELMSHIPGPDFPTAALI-NGRKGIEEAYKTGRGKIYVRA 244 Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVL 313 R +E +G I+V EIPYQV K++LIEKIA+ + K+I + +RDES +D +RIV+ Sbjct: 245 RAEIETDEKGRESIIVNEIPYQVNKAKLIEKIADFVKDKKIEGISGLRDESDKDGMRIVI 304 Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373 K ++ ++++ +++ L+ M+ +N+ L G+ P+++ L +++ ++ HRREV+ Sbjct: 305 EIKRDAVG-EVVLNNLYALTQMQVTLGINIVALDHGQ-PKLLNLKQLIEAFVLHRREVVT 362 Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR------------- 420 RR+ F ++ R IL+GL IA N+D II +IR P P R Sbjct: 363 RRTIFELRKARERTHILEGLAIALANVDPIIELIRK--APNPENAKRELLTHPWQLGHVA 420 Query: 421 --------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNL 454 + LTE Q AIL+LRL+ L L +I E L Sbjct: 421 DMLAASGVDAARPEDLDEQYGIRDGLYYLTEVQAQAILDLRLQKLTNLGHDEILDEYKKL 480 Query: 455 LAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAM 514 L K+ +L S ++ I E+ +++E F+ RRT E++ A + + Sbjct: 481 LDAIGKLLYILRSPERLMEVIREELEQIREQFNDP-----RRT---EITAASGDINLEDL 532 Query: 515 IEKEPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLL 566 I +E + V +S+ G+++ + + SA KE D ++ L A+T D IL Sbjct: 533 IAQEDVVVTLSHEGYVKYQPITDYEAQRRGGKGKSATKMKEEDFIEKLLVANTHDTILCF 592 Query: 567 STDGKAYTLPAGNL-LSGRG-HGEAIQLLIDLNHNQDI-----VTAFVYDSTCKLLVVSS 619 S+ G+ Y L L + RG G I ++ LN N+ I V A+ D K +V+++ Sbjct: 593 SSRGRLYWLKVYQLPQASRGARGRPIVNILPLNENERITAILPVAAYEED---KFVVMAT 649 Query: 620 KG 621 G Sbjct: 650 AG 651 >gi|254450619|ref|ZP_05064056.1| DNA gyrase, A subunit [Octadecabacter antarcticus 238] gi|198265025|gb|EDY89295.1| DNA gyrase, A subunit [Octadecabacter antarcticus 238] Length = 918 Score = 405 bits (1040), Expect = e-110, Method: Compositional matrix adjust. Identities = 246/681 (36%), Positives = 377/681 (55%), Gaps = 58/681 (8%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 +S+ ++ YL YA+S I RAIPDLRDG KPVHRRI++AM E G ++KSAR V Sbjct: 26 ISITAEMKTSYLDYAMSVIVSRAIPDLRDGLKPVHRRILYAMYEAGNTHDKPYRKSARAV 85 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+V+GK HPHGD ++YD+L R+AQ F PL+ GQGNFG++DGD+ AA RYTE RM + Sbjct: 86 GDVMGKYHPHGDSAIYDALARMAQDFSMSLPLLDGQGNFGSMDGDNPAAMRYTEVRMDKP 145 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A +L +D+D VDF+D Y+ +D EP V PS+FPN+L NG GIAVGMAT+IP HN+ E+ Sbjct: 146 AAYMLADIDKDTVDFQDNYDGKDREPTVLPSRFPNMLVNGAGGIAVGMATNIPPHNLGEV 205 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 +A L LI+NP+++ E L+EYI GPDFPTGGI++ R ++Y GRG RA+ E Sbjct: 206 IDACLGLIENPDLTSEDLIEYIPGPDFPTGGIML-GRTGARKAYLEGRGSVITRAKTHTE 264 Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKNR 318 E+ + + I++TEIPYQV KS +I++IAE K+I + ++DES + VR+V+ K R Sbjct: 265 EIRKDRFAIIITEIPYQVNKSTMIDRIAEAARDKKIEGISHVQDESDRNGVRVVIELK-R 323 Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378 ++++ +F + M+T F NM L+ GR P+ + L L +L R +V+ RR++F Sbjct: 324 DATAEVVLNQLFRFTPMQTYFGCNMLALNGGR-PETLTLRRFLTSFLDFREDVVIRRTAF 382 Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDKP--KPVMVSR--------------- 420 + R +L GL +A N+DE++A IR + D P + +++R Sbjct: 383 ELNKARDRAHVLCGLAVAVSNVDEVVATIRASADAPSARAALMTRAWPAAEILPFILLID 442 Query: 421 -----------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGK 469 ++L+E Q AIL LRL+ L ++ ++ EL+ L + ++ ++L S + Sbjct: 443 DPTHPANADGTYNLSEIQARAILELRLQRLTQIGVKEVTDELEELAGKIKEYLAILASRE 502 Query: 470 QQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW 529 + I E+ E K +F+ RRT + S + +IE + + V ++ G+ Sbjct: 503 RIMQIITDELAECKTLFAVP-----RRTQIVDWS---GDMEDEDLIESQDMVVTVTETGY 554 Query: 530 I--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL 581 I R+ K +S KE D + A+T ++L +TDG Y L L Sbjct: 555 IKRTALVDFRAQKRGGKGVSGGSLKEDDVVTTLFVANTHTQLLFFTTDGMVYKLKTWRLP 614 Query: 582 SGR--GHGEAIQLLIDLNHNQDIVTAFVYD------STCKLLVVSSKGNAFIVEESEIIA 633 G G+AI ++ + I D +++ +S G + S+ Sbjct: 615 QGSRTSKGKAIVNILPIPTGVSIAAIMPVDRDEKDWDDLQIVFATSAGTVRRNKLSDFTK 674 Query: 634 NTRKGKTFLKVSSE-EKMKLV 653 R GK +K E E ++L+ Sbjct: 675 VMRNGKIAMKFEGENEGVQLI 695 >gi|258507001|ref|YP_003169752.1| DNA gyrase subunit A [Lactobacillus rhamnosus GG] gi|257146928|emb|CAR85901.1| DNA gyrase subunit A [Lactobacillus rhamnosus GG] gi|259648371|dbj|BAI40533.1| DNA gyrase A subunit [Lactobacillus rhamnosus GG] Length = 870 Score = 405 bits (1040), Expect = e-110, Method: Compositional matrix adjust. Identities = 242/712 (33%), Positives = 404/712 (56%), Gaps = 53/712 (7%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 E + V+L + + +L YA+S I RA+PD+RDG KPV RRI++ M+E+G+ +K Sbjct: 6 ESRITNVNLGETMRKSFLEYAMSVIVARALPDVRDGLKPVQRRILYGMNELGVTPDKPYK 65 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSARIVG+V+GK HPHGD S+Y+ LVR+AQ F RY L+ G GNFG++DGD AAA RYTE Sbjct: 66 KSARIVGDVMGKYHPHGDSSIYEGLVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAMRYTE 125 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 ARM+++A +L+ +++D +DF+D Y+ + EPVV P++FPNLL NG +GIAVGM T+IP Sbjct: 126 ARMSKIAVEMLRDINKDTIDFQDNYDGTEKEPVVLPARFPNLLVNGATGIAVGMTTNIPP 185 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E A L+D+P+ + L++ + GPDFPTGG+++ + I +Y GRG +R Sbjct: 186 HNLSETISALHVLMDHPDATTADLMQALPGPDFPTGGVVM-GKSGIRHAYETGRGTIVLR 244 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313 + V+ G IV+TEIPY V K++++E+IA+L+ K+I + +RDES D ++ Sbjct: 245 GKVDVQTEKSGRERIVITEIPYMVNKAKMVERIADLVHEKKIDGIVTLRDESDRDGMRIV 304 Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373 R +++ +++ L+ ++T F NM + G P+V+ L IL+ +L H+ V+ Sbjct: 305 IDVRRDASASVILNNLYKLTPLQTGFSFNMVAIVNG-APKVLSLKQILQYYLDHQENVIR 363 Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDA 430 RR+ + ++ R IL+GL IA +IDEII IIR+ DK K +++ +F+L++ Q A Sbjct: 364 RRTQYDLKKAKAREHILEGLRIALDHIDEIITIIRSSETGDKAKVILMDKFNLSDKQSQA 423 Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490 IL++RL L LE +++SE ++ A +L ++ I E+ ++++ F Sbjct: 424 ILDMRLVRLTGLERDKVESEYKDVEAAIADYTDILAKPERVHQIIYDELLDIQKKFGD-- 481 Query: 491 DLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSLKSHSVD--------LS 541 +RRT E+ + +L+ + +IE+E + + +S+ G+++ L + + Sbjct: 482 ---KRRT---ELLVGEVLSLEDEDLIEQEDVVITLSHNGYVKRLATSEFKTQNRGGRGIQ 535 Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAY---------------TLPAGNLLSGRGH 586 ++ + D ++ + T D +L + GK Y +P NLL G G Sbjct: 536 GMNVHDDDFVEHLISTSTHDVLLFFTNKGKVYRSKGYEIPEYSRTAKGIPIINLL-GVGA 594 Query: 587 GEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR-KGKTFLKVS 645 GE IQ +I++ H D +++ T +V + F AN R G L + Sbjct: 595 GEKIQTVINV-HEGDNDDRYLFFVTQNGVVKRTPVKEF--------ANIRSNGLIALNLK 645 Query: 646 SEEKMKLVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSRG----KGVRLQSY 692 ++++ V+ +G ++G + + F + M R +G+RL+ + Sbjct: 646 DQDELNNVILTSGQDNILIGTHLGYSVAFKEQDVRSMGRTATGVRGIRLRDH 697 >gi|161898747|ref|YP_191315.2| DNA gyrase subunit A [Gluconobacter oxydans 621H] Length = 930 Score = 405 bits (1040), Expect = e-110, Method: Compositional matrix adjust. Identities = 234/587 (39%), Positives = 340/587 (57%), Gaps = 46/587 (7%) Query: 30 YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89 YLAYA+S I RA+PD+RDG KPVHRRI++AM E G ++KSAR VG+V+GK HPH Sbjct: 11 YLAYAMSVIVSRALPDVRDGLKPVHRRILYAMRESGFTADKPYRKSARAVGDVMGKYHPH 70 Query: 90 GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDE 149 GD S+YD++VR+AQ + R LI GQGNFG++DGDS AA RYTEAR+ + + +L ++ Sbjct: 71 GDSSIYDAMVRMAQHWSMRVKLIDGQGNFGSVDGDSPAAMRYTEARLAKASSFLLDDIER 130 Query: 150 DAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDN 209 D VDF+ Y+E ++EP V P+ FPNLL NG +GIAVGMAT+IP+HN E+ +A LA+I N Sbjct: 131 DTVDFQPNYDESENEPKVLPAVFPNLLVNGAAGIAVGMATNIPTHNPGEVIDATLAMIAN 190 Query: 210 PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIV 269 P I +++L++ I GPDFPTGGII+ R I +Y GRG VRAR +EE+ + I+ Sbjct: 191 PAIELDELMQIIPGPDFPTGGIIM-GRSGIRRAYETGRGSIPVRARAEIEEIRKDRQAII 249 Query: 270 VTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESI 329 +TEIPYQV K+ L EKIA+L+ +K I + DIRDES V+ R PD+++ + Sbjct: 250 ITEIPYQVNKATLQEKIADLVRSKEIEGISDIRDESDRSGMRVVIELKRDATPDVVLNQL 309 Query: 330 FMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEI 389 + + ++T F NM L G+ P+ M L IL+ +L R EV+ RR+ F + R + Sbjct: 310 YRFTQLQTSFSANMLALDDGK-PRTMGLKDILEAFLRFREEVILRRARFDLNKARDRGHL 368 Query: 390 LKGLLIAYLNIDEIIAIIRN----------------------------EDKPKPVMVSRF 421 L GL++A NIDE+IA+IR D+ ++ + Sbjct: 369 LVGLVLAVANIDEVIALIRAAPDAATARESLMAREWDASEVVPLLELIHDEGNVIIDGKV 428 Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481 LTE Q IL LRL+ L LE +I+ EL + +KI LL + + ++ +RE Sbjct: 429 RLTEAQARGILELRLQRLTGLEREKIQGELGEV---AQKIGELLAIIESRPRRMEV-MRE 484 Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSL 533 E+ + ++ R T E+S A +++IE + V I+ G+I RS Sbjct: 485 --ELLAARAEVATPRVT--EISDALGDQTDESLIEPGQMVVTITRDGFIKRTPLEVFRSQ 540 Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL 580 +A + D + + +AHT ++ S+ GKAY + +L Sbjct: 541 NRGGRGRTASGRRGDDIIVRSFNAHTHQWVMFFSSGGKAYRMKVWHL 587 >gi|312116030|ref|YP_004013626.1| DNA gyrase subunit alpha [Rhodomicrobium vannielii ATCC 17100] gi|311221159|gb|ADP72527.1| DNA gyrase, A subunit [Rhodomicrobium vannielii ATCC 17100] Length = 941 Score = 405 bits (1040), Expect = e-110, Method: Compositional matrix adjust. Identities = 245/673 (36%), Positives = 375/673 (55%), Gaps = 54/673 (8%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 +++ + + ++ YL YA+S I RA+PD+RDG KPVHRRI+ +MSE G + ++KS Sbjct: 16 DIRPILITDEMKRSYLDYAMSVIVSRALPDVRDGLKPVHRRILFSMSENGYSWNKPYRKS 75 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 ARIVG+VIGK HPHGDQSVYD+LVR+ Q F R PLI GQGNFG++DGD AA RYTE R Sbjct: 76 ARIVGDVIGKYHPHGDQSVYDALVRMVQDFSMRVPLIDGQGNFGSVDGDPPAAMRYTEVR 135 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 + ++++ +L ++ D VDF+D Y+ + EP V P++FPNLL NG GIAVGMAT+IP HN Sbjct: 136 LQKISDSLLNDLENDTVDFQDNYDNSEREPTVLPARFPNLLVNGAGGIAVGMATNIPPHN 195 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 + E+ +A LA ++NP +SIE+L+E+I GPDFPTGG+I+ R I +Y GRG VR + Sbjct: 196 LGEVIDACLAFLENPALSIEQLMEHIPGPDFPTGGVIM-GRAGIRAAYLKGRGSVVVRGK 254 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315 VE + + ++VTEIPYQV K+ L E+IAEL+ KR+ + D+RDES V+ Sbjct: 255 VHVETIRKDRDALIVTEIPYQVNKATLQERIAELVREKRVEGISDVRDESDRSGYRVVIE 314 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 R PD+++ ++ + +++ F NM L+ GR Q LD ++ + R V+ RR Sbjct: 315 LKRDAMPDVVLNQLYRFTSLQSVFAANMVALNSGRPEQHTLLD-FIQAFTQFRETVITRR 373 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR------------ 420 + F + R +L GL A NIDE+I +IR+ P + ++SR Sbjct: 374 TKFLLGKARDRAHVLVGLATAVANIDEVIKLIRSAPDPASAREALMSRDWPADDIAPLLL 433 Query: 421 --------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466 + L+ +Q AIL LRL+ L L +I EL L + ++L+ Sbjct: 434 LIEDPRSRIHEGNVYRLSIDQAKAILELRLQRLTALGRDEIADELKALADKIRDYLNILS 493 Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526 S + + + E+ +KE F+ RRT +V + + +I+KE + V +S+ Sbjct: 494 SRARVISIVRDELTAIKEEFATP-----RRTEILDV---EGEVDDEDLIQKEDMVVTVSH 545 Query: 527 RGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAG 578 RG+I R+ + S + ++ D + A+T +L LS+ G AY + Sbjct: 546 RGYIKRVPLSTYRAQRRGGKGRSGMTTRDEDFVTRLFVANTHTPVLFLSSRGMAYKMKVW 605 Query: 579 NL-LSG-RGHGEAIQLLIDLNHNQDIVTAFVY-----DSTCKLLVVSSKGNAFIVEESEI 631 L LS + G+A+ L+ L ++ I + +S +L + GN E ++ Sbjct: 606 RLPLSAPQARGKALINLLPLQQDETITSILPLPEERDESGVFILFATRSGNVRRNELADF 665 Query: 632 IANTRKGKTFLKV 644 + GK +K+ Sbjct: 666 AEVRQNGKIAMKL 678 >gi|88607482|ref|YP_505474.1| DNA gyrase subunit A [Anaplasma phagocytophilum HZ] gi|88598545|gb|ABD44015.1| DNA gyrase, A subunit [Anaplasma phagocytophilum HZ] Length = 906 Score = 405 bits (1040), Expect = e-110, Method: Compositional matrix adjust. Identities = 226/604 (37%), Positives = 348/604 (57%), Gaps = 55/604 (9%) Query: 13 VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72 + + V VS+ LE+ YL+YA+S I RAIPD+RDG KPVHRRI+++M + G D + Sbjct: 1 MSDGVLPVSIEKELEDSYLSYAMSVIVSRAIPDVRDGLKPVHRRILYSMYKSGYDHDKPY 60 Query: 73 KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132 KK+AR+VG+V+G+ HPH D ++YD+LVR+AQ F PLI QGNFG++DGD A+ RYT Sbjct: 61 KKAARVVGDVMGRYHPHADTAIYDALVRMAQDFSLLVPLIDSQGNFGSVDGDPPASMRYT 120 Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192 EAR+ Q A +L +DED VDFR Y+E + EPVV P++FPN+L NG G+AVGM+T+IP Sbjct: 121 EARLAQAAHFLLNDIDEDTVDFRPNYDENEQEPVVLPAEFPNVLVNGAGGVAVGMSTNIP 180 Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252 SHN+ EI +A++ IDNPE+++E+L+ I GPDFPTGG+I+ I ++ GRG + Sbjct: 181 SHNLGEIIDASVMYIDNPEVTLEELMTVIPGPDFPTGGVIM-GDAGIKSAFATGRGTIII 239 Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312 + + +EE+ G I++ EIPYQ K++L+E+I EL+ K+I + D+RDES + V Sbjct: 240 QGKTHIEELPSGRQAIIIDEIPYQTNKAKLVERIHELVKEKKIEGVSDLRDESNKSGIRV 299 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 + ++ +++ + L+ + T F +N VL R P+VM L I++ ++A R+EVL Sbjct: 300 AIELKKQINSQVVLNQLLGLTPLRTSFSINTLVLDNSR-PRVMSLIEIIETFVAFRKEVL 358 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---------------------- 410 RR+ +R++ + R + G+ IA LNIDEI+AIIR Sbjct: 359 VRRTRYRLKKVRERAHLFIGMYIAVLNIDEIVAIIRASKDAAEAAAALRERTWSPSEEVR 418 Query: 411 -------DKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDS 463 D + R+ LT Q+ AIL +RL+ L LE+ +++ EL +++A + Sbjct: 419 GMIELVSDSTGVIEGGRYRLTAPQIKAILEMRLQRLTGLEKGKLEVELQSMVALITEYTK 478 Query: 464 LLNSGKQQWNQIACEIREVKEIFSKSTDLGRR----RTTFCEVSRADKATLQQAMIEKEP 519 +L++ + + C +RE D+ RR R T E S+ D +++I +E Sbjct: 479 ILSTD----SLLMCMVRE------GLLDVKRRVATPRRTTIEESKGDIDA--ESLIPREE 526 Query: 520 ITVVISNRGWIRSLKSHSVDLS--------ALHFKEGDSLKIALHAHTTDRILLLSTDGK 571 + V ++ G+++ +K + A KE D T +L S GK Sbjct: 527 MVVTVTMNGFVKRVKLSNYRAQKRGGKGRVAQGIKEEDVTTKLFVVDTHTSVLFFSNVGK 586 Query: 572 AYTL 575 Y L Sbjct: 587 VYKL 590 >gi|320546782|ref|ZP_08041093.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus equinus ATCC 9812] gi|320448661|gb|EFW89393.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus equinus ATCC 9812] Length = 809 Score = 405 bits (1040), Expect = e-110, Method: Compositional matrix adjust. Identities = 245/711 (34%), Positives = 407/711 (57%), Gaps = 48/711 (6%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 ++N+ V+L ++ ++ YA+S I RA+PD+RDG KPVHRRI++ M+E+G+ K Sbjct: 3 DKNLIDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHK 62 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSARI G+V+GK HPHGD S+Y+++VR+AQ + R+ L+ G GNFG++DGD AAA RYTE Sbjct: 63 KSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTE 122 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 ARM+++A +L+ ++++ VDF+D Y+ + EP+V P++FPNLL NG +GIAVGMAT+IP Sbjct: 123 ARMSKIALEMLRDINKNTVDFQDNYDGSEREPLVLPARFPNLLVNGATGIAVGMATNIPP 182 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E +A ++DNP+++ +L+E + GPDFPTG +++ + I ++Y G+G +R Sbjct: 183 HNLGESIDAVKLVMDNPDVTTRELMEVLPGPDFPTGALVM-GKSGIRKAYETGKGSIVLR 241 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312 +R +E G IVVTE PY V K+++ E I L KRI + +RDES+ E VR + Sbjct: 242 SRTEIETTKSGRERIVVTEFPYGVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGVRFI 301 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 + + R ++++ ++F L+ ++T F NM + G VP+++ L I+ +++ H++EV+ Sbjct: 302 IEVR-RDASANVILNNLFKLTSLQTNFSFNMLAIENG-VPKILSLKQIIIDYIEHQKEVI 359 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVD 429 RR+ F ++R IL+GLLIA ++D++I+IIRN + + ++SRF+L+E Q Sbjct: 360 VRRTEFDKAKAEKRAHILEGLLIALDHLDDVISIIRNSETDVIAQSELMSRFNLSERQSQ 419 Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489 AIL++RLR L LE +I++E D+LLA + +L + I E+ E+K K Sbjct: 420 AILDMRLRRLTGLEREKIQAEYDDLLALIADLADILAKPDRVITIIKEEMDEIKR---KY 476 Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DLS 541 D R EV + + +IE+E + + +SN+G+I+ L + Sbjct: 477 VDPRRTELMVGEVL----SIEDEDLIEEEDVLITLSNKGYIKRLAQDEFRAQRRGGRGVQ 532 Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLLSGRGH 586 + D ++ + +T D + ++ G+ Y LP NLL Sbjct: 533 GTGVNDDDFVRELVSTNTHDHVYFMTNKGRVYRLKGYEIPEYGRTAKGLPIVNLLK-LDE 591 Query: 587 GEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS 646 GE +Q +I N ++ L V+ +G +ESE + G L + Sbjct: 592 GETVQTIISEKGND--------ETENYLFFVTRQGVVKRTKESEFSNIRQNGLKALNLKE 643 Query: 647 EEKMKLVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSR-GKGVRLQSYKDG 695 +++ V++ GD ++G + F+ + MSR GVR + ++G Sbjct: 644 SDELINVIRTNGDDDIIIGTKTGYSVRFNESSVRSMSRSATGVRGVNLREG 694 >gi|312959698|ref|ZP_07774215.1| DNA gyrase, subunit A [Pseudomonas fluorescens WH6] gi|311286415|gb|EFQ64979.1| DNA gyrase, subunit A [Pseudomonas fluorescens WH6] Length = 884 Score = 404 bits (1039), Expect = e-110, Method: Compositional matrix adjust. Identities = 247/664 (37%), Positives = 383/664 (57%), Gaps = 69/664 (10%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 V++ L++ YL YA+S I RA+PD RDG KPVHRR++ AMSE+G D+ +KKSAR+V Sbjct: 11 VNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDWNKPYKKSARVV 70 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG++DGD+AAA RYTE RMT++ Sbjct: 71 GDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRYTEVRMTKL 130 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A +L + ++ VD+ Y+ + P V P++ PNLL NG+SGIAVGMAT+IP HN+ E+ Sbjct: 131 AHELLADLHKETVDWVPNYDGTEMIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHNLGEV 190 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 + LALIDNPE+++++L++YI GPDFPT II R I+E+YR GRG +RAR +E Sbjct: 191 IDGCLALIDNPELTVDELMQYIPGPDFPTAAII-NGRAGIIEAYRTGRGRIYMRARSIIE 249 Query: 260 EVGR--GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317 ++ + G IV+TE+PYQ+ K+RLIEKIAEL+ K++ + ++RDES +D V+ Sbjct: 250 DIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKLEGITELRDESDKDGMRVVIELR 309 Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377 R P++++ +++ + +++ F +N+ L GR P+++ L +L+ ++ HRREV+ RR+ Sbjct: 310 RGEVPEVILNNLYAQTQLQSVFGINVVALIDGR-PRILNLKDLLEAFVRHRREVVTRRTV 368 Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVS--------------- 419 F ++ R IL+G +A NID +IA+I+ P K ++S Sbjct: 369 FELRKARERGHILEGQAVALSNIDPVIALIKASPTPSEAKEALISTPWESSAVVAMVERA 428 Query: 420 -------------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEK 460 ++ L+ Q AIL LRL L LE ++ +E +L + + Sbjct: 429 GADSCRPETLDPQYGLREGKYFLSPEQAQAILELRLHRLTGLEHEKLLAEYQEILNQIGE 488 Query: 461 IDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI 520 + +LNS + I E+ ++ + RRT + +R D TL MI +E Sbjct: 489 LIRILNSAVRLMEVIREELEVIRAEYGDV-----RRTEILD-ARLD-LTLGD-MIPEEER 540 Query: 521 TVVISNRGWIRS--LKSHSVDL------SALHFKEGDSLKIALHAHTTDRILLLSTDGKA 572 V IS+ G+ ++ L ++ SA K+ D + L A++ +LL S+ GK Sbjct: 541 VVTISHGGYAKTQPLAAYQAQRRGGKGKSATGVKDEDYIAHLLVANSHTTLLLFSSKGKV 600 Query: 573 YTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTA----------FVYDSTCKLLVVSSK 620 Y L + S G + L+ L+ ++ I T F++ +T K V + Sbjct: 601 YWLKTYEIPEASRAARGRPLVNLLPLDSDEYITTMLPVEEYTEGHFIFMATAKGTVKKTP 660 Query: 621 GNAF 624 +F Sbjct: 661 LESF 664 >gi|330986666|gb|EGH84769.1| DNA gyrase subunit A [Pseudomonas syringae pv. lachrymans str. M301315] Length = 928 Score = 404 bits (1039), Expect = e-110, Method: Compositional matrix adjust. Identities = 236/603 (39%), Positives = 358/603 (59%), Gaps = 57/603 (9%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 V++ L++ YL YA+S I RA+PD RDG KPVHRR++ AMSE+G D+ +KKSAR+V Sbjct: 11 VNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDWNKPYKKSARVV 70 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG++DGD+AAA RYTE RMT++ Sbjct: 71 GDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRYTEVRMTKL 130 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A +L + ++ VD+ Y+ + P V P++ PNLL NG+SGIAVGMAT+IP HN+ E+ Sbjct: 131 AHELLADLHKETVDWVPNYDGTEMIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHNLGEV 190 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 + LALIDNPE++I++L++YI GPDFPT II R I+E+YR GRG +RAR VE Sbjct: 191 IDGCLALIDNPELTIDELMQYIPGPDFPTAAII-NGRAGIIEAYRTGRGRIYMRARSIVE 249 Query: 260 EVGR--GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317 ++ + G IV+TE+PYQ+ K+RLIEKIAEL+ K++ + ++RDES +D V+ Sbjct: 250 DIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKLEGITELRDESDKDGMRVVIELR 309 Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377 R P++++ +++ + +++ F +N+ L GR P+++ L +L+ ++ HRREV+ RR+ Sbjct: 310 RGEVPEVVLNNLYAQTQLQSVFGINIVALIDGR-PRILNLKDLLEAFVRHRREVVTRRTV 368 Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV----------------MVSR- 420 F ++ R IL+G +A NID +IA+I+ P MV R Sbjct: 369 FELRKARERGHILEGQAVALSNIDPVIALIKASPTPAEAKEALIKTPWESSAVVEMVERA 428 Query: 421 --------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEK 460 + L+ Q AIL LRL L LE ++ E +L + + Sbjct: 429 GADSCRPENLNPQYGLREGKYFLSPEQAQAILELRLHRLTGLEHEKLLGEYQEILNQIGE 488 Query: 461 IDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI 520 + +LNS + I E+ ++ + + RRT + +R D TL + E+E + Sbjct: 489 LIRILNSATRLMEVIREELEVIRSEYGDA-----RRTEILD-ARLD-LTLGDLITEEERV 541 Query: 521 TVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKA 572 V IS+ G+ ++ + SA K+ D + L A++ +L+ S+ GK Sbjct: 542 -VTISHGGYAKTQPLAVYQAQRRGGKGKSATGIKDEDYIAHLLVANSHTTLLMFSSKGKV 600 Query: 573 YTL 575 Y L Sbjct: 601 YWL 603 >gi|260584262|ref|ZP_05852009.1| DNA gyrase, A subunit [Granulicatella elegans ATCC 700633] gi|260157780|gb|EEW92849.1| DNA gyrase, A subunit [Granulicatella elegans ATCC 700633] Length = 850 Score = 404 bits (1039), Expect = e-110, Method: Compositional matrix adjust. Identities = 236/701 (33%), Positives = 406/701 (57%), Gaps = 30/701 (4%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 EE + L + + +L Y++S I RA+PD+RDG KPVHRRI++ M E+G+ K Sbjct: 11 EEKFEPTDLAKTMRKSFLEYSMSVIVSRALPDVRDGLKPVHRRILYGMHELGVTPDKPHK 70 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSARIVG+V+GK HPHGD ++YD++VR+AQ F RYPLI G GNFG++DGDS AA RYTE Sbjct: 71 KSARIVGDVMGKYHPHGDSAIYDAMVRMAQDFSYRYPLIDGHGNFGSVDGDSPAAMRYTE 130 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 ARM+++A +L+ +++D +++RD Y+ + EP V PS+ PNLL NG +GIAVGMAT+IP Sbjct: 131 ARMSKIALEMLRDINKDTINYRDNYDSTEREPEVLPSRIPNLLVNGATGIAVGMATNIPP 190 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 H++ E+ A L+ NP+++ +L+E + GPDFPTGGI++ + I +Y GRG VR Sbjct: 191 HHLGEVISALHLLMKNPDVTTAELMEVLPGPDFPTGGIVL-GKSGIRRAYETGRGSITVR 249 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313 R +EE+ G I++TE+PY V K+RL+E+I++L K+I + + DES V+ Sbjct: 250 GRVQIEELKNGKERIIITELPYMVNKARLVERISQLHHEKKIEGITYLNDESDRKGMRVV 309 Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373 R + +++ +++ L+ +++ F NM + +G+ P+++ L IL+ +L H+ EV+ Sbjct: 310 IEVRRDVSASVVLNNLYKLTPLQSNFGFNMLAI-VGQEPKILSLKEILRHYLNHQEEVIR 368 Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDA 430 RRS F + + R IL+GL +A +ID I+AI+R+ D K ++ + L++ Q A Sbjct: 369 RRSIFEKKKAEDRAHILEGLQVALDHIDAIVAILRSSASGDIAKERFMNEYGLSDKQAQA 428 Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490 IL++R+ L LE +I +E +L A ++++ +L S ++++ I E+ E+++ F Sbjct: 429 ILDMRMVRLTGLEREKIDAEYADLQALIKELNEILASEERRYEIIEQELLEIQQKFDNP- 487 Query: 491 DLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSLKSHSVD--------LS 541 RRT E+ + +L+ + +IE+E + + ++ G+I+ L + + Sbjct: 488 ----RRT---ELLVGEALSLEDEDLIEQEDVVITLTKNGYIKRLANSEFKTQRRGGRGVQ 540 Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHN 599 + + D ++ + T D +L + GK Y + S G + L++++ Sbjct: 541 GMSVHDDDFVENMISCSTHDSLLFFTNTGKVYQAKGYEIPEYSRTAKGLPVINLLNIDST 600 Query: 600 ---QDIVTAFVYDSTCKLLVVSS-KGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655 Q I++ D T + L ++ +G V+ S+ G +++ ++++ VV Sbjct: 601 EKIQAIISVPESDETERFLFFTTLRGTVKRVKLSDFKNIRTNGLRAIQLREDDQLIRVVV 660 Query: 656 VTGDHVAVVGE-NRKLLIFSIDQIPEMSR-GKGVRLQSYKD 694 +G ++G + + F +++ M R GVR S +D Sbjct: 661 TSGQDGIILGTYHGNAVTFHEEKVRAMGRTAAGVRGVSLRD 701 >gi|317500892|ref|ZP_07959103.1| DNA gyrase, subunit A [Lachnospiraceae bacterium 8_1_57FAA] gi|316897690|gb|EFV19750.1| DNA gyrase, subunit A [Lachnospiraceae bacterium 8_1_57FAA] Length = 853 Score = 404 bits (1039), Expect = e-110, Method: Compositional matrix adjust. Identities = 245/666 (36%), Positives = 383/666 (57%), Gaps = 36/666 (5%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 + V V L+ +E Y+ YA+S I RA+PD+RDG KPV RRI+++M E+ +K Sbjct: 7 DKVHEVDLKKTMETSYIDYAMSVIAARALPDVRDGLKPVQRRILYSMIELNNGPDKPHRK 66 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 ARIVG+ +GK HPHGD S+Y +LV LAQ + RYPL+ G GNFG++DGD AAA RYTEA Sbjct: 67 CARIVGDTMGKYHPHGDSSIYGALVNLAQEWSTRYPLVDGHGNFGSVDGDGAAAMRYTEA 126 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 R+++++ + +++D VDF ++E + EPVV PS+FPNLL NGTSGIAVGMAT+IP H Sbjct: 127 RLSKISMEMTADINKDTVDFVPNFDETEKEPVVLPSRFPNLLVNGTSGIAVGMATNIPPH 186 Query: 195 NVQEICEAALALID-----NPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249 N++E+ A + +ID N E S+E +L+ I GPDFPTG I+ +R I E+YR GRG Sbjct: 187 NLREVINAVVKIIDDQIDENGETSMEDILQIIKGPDFPTGAEILGTR-GIEEAYRTGRGK 245 Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309 RVRA +E + G I+VTE+P+ V K+RLIEKIAEL+ K++ + D+ D+S+ + Sbjct: 246 IRVRAVTNIEPMQNGKNRIIVTELPFMVNKARLIEKIAELVRDKKVDGITDLSDQSSREG 305 Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369 + R ++P++++ ++ + ++ F + M L + P+VM + +LK +L H+ Sbjct: 306 MRICIELRRDVNPNVILNQLYKHTQLQDTFGVIMLAL-VNNEPKVMNILDMLKYYLKHQE 364 Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTEN 426 EV+ RR+ + + + R IL+GLLIA NIDE+I IIR N + K ++SRF L+E Sbjct: 365 EVVTRRTKYDLNKAEERAHILQGLLIALDNIDEVIKIIRGSKNVQEAKAELISRFDLSEV 424 Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486 Q AI+++RLR+L LE ++++E L+ + E+ ++L K I KEI Sbjct: 425 QAQAIVDMRLRALTGLEREKLEAEYAELMKKIEEYRAILADRKLLLGVIR------KEIL 478 Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD------- 539 S G R T D + + +I +E + + ++N G+I+ + + Sbjct: 479 VISEKYGDERRTHIGYDEFDIS--MEDLIPRENVVITVTNMGYIKRMSMDTFKSQNRGGK 536 Query: 540 -LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEAIQLLIDL 596 + + E D ++ + I+ + G+ Y L A + +GR G A+ L+ L Sbjct: 537 GIKGMQTLEEDFIRELFVTTSHHYIMFFTNKGRVYRLKAYEIPEAGRTARGTAVINLLQL 596 Query: 597 NHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS--EEKMK 651 ++ I Y+ L + + KG +V+++ I KT L S E+ + Sbjct: 597 MPDEKITATIPIKEYEDGKYLFMATKKG---LVKKTPIQDYMNVRKTGLAAISLREDDLL 653 Query: 652 LVVKVT 657 + VKVT Sbjct: 654 IEVKVT 659 >gi|149204038|ref|ZP_01881006.1| DNA gyrase subunit A [Roseovarius sp. TM1035] gi|149142480|gb|EDM30525.1| DNA gyrase subunit A [Roseovarius sp. TM1035] Length = 899 Score = 404 bits (1039), Expect = e-110, Method: Compositional matrix adjust. Identities = 234/612 (38%), Positives = 360/612 (58%), Gaps = 51/612 (8%) Query: 19 AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78 +VS+ ++ YL YA+S I RAIPDLRDG KPVHRRI++AM E G ++KSAR Sbjct: 15 SVSITHEMKTSYLDYAMSVIVSRAIPDLRDGLKPVHRRILYAMHESGNTHDKPYRKSARA 74 Query: 79 VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138 VG+V+GK HPHGD ++YD+LVR+AQ F PL+ GQGNFG++DGD+AAA RYTE RM + Sbjct: 75 VGDVMGKYHPHGDSAIYDALVRMAQDFSMSLPLLDGQGNFGSMDGDNAAAMRYTEVRMDK 134 Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198 A +L ++++ V+F+D Y+ +D EP V P++FPN+L NG GIAVGMAT+IP HN+ E Sbjct: 135 PAAYLLADIEKETVNFQDNYDGKDREPTVLPARFPNMLVNGAGGIAVGMATNIPPHNLGE 194 Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258 + +A LALIDNP++ E L++YI GPDFPTGG+++ R ++Y GRG +RA+ Sbjct: 195 VVDATLALIDNPDLESEDLIQYIPGPDFPTGGLML-GRSGARKAYLEGRGSVIIRAKTRT 253 Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKN 317 EE+ + + I++ EIPYQV K+ +IE+IAE KRI + ++DES + VR+V+ K Sbjct: 254 EEIRKDRYAIIIDEIPYQVNKATMIERIAEAARDKRIEGIAHVQDESDRNGVRVVIELK- 312 Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377 R ++++ ++ + M+T F NM L+ G+ P+ + L L ++ R EV+ RR++ Sbjct: 313 RDATAEVVLNQLYRFTPMQTYFGCNMLALNGGK-PEQLTLHRFLSLFITFREEVVARRTA 371 Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---------------------------- 409 + ++ R +L GL +A N+DE++A IR Sbjct: 372 YDLRKARERAHVLCGLAVAVSNVDEVVATIRGSMDAAEARQKLMERRWPAGDILPYIALI 431 Query: 410 EDKPKPVMV-SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSG 468 +D P ++L+E Q AIL+LRL+ L +L ++ EL +L + ++ ++L S Sbjct: 432 DDPSHPANADGTYNLSEVQARAILDLRLQRLTQLGVKEVTDELQDLAGKIKEYLAILASR 491 Query: 469 KQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRG 528 ++ I+ E+REV+E+F+ RRT + S + +IE+E + V +++ G Sbjct: 492 ERIMQIISDELREVRELFAVP-----RRTEIVDWS---GDMEDEDLIEREDMVVTVTSGG 543 Query: 529 WI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL 580 +I R+ K LS + K+ D + A+T ++L +T G Y L L Sbjct: 544 YIKRTALADFRAQKRGGKGLSGMATKDEDVVTTLFVANTHTQLLFFTTGGMVYKLKTWRL 603 Query: 581 -LSGR-GHGEAI 590 L GR G+AI Sbjct: 604 PLGGRTSKGKAI 615 >gi|123441724|ref|YP_001005708.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122088685|emb|CAL11487.1| DNA gyrase subunit A [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 885 Score = 404 bits (1039), Expect = e-110, Method: Compositional matrix adjust. Identities = 250/635 (39%), Positives = 367/635 (57%), Gaps = 60/635 (9%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + V++ L+ YL YA+S I RA+PD+RDG KPVHRR++ AM+ +G D+ +KKSA Sbjct: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKPYKKSA 67 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD +VY ++VR+AQPF RY L+ GQGNFG++DGDSAAA RYTE RM Sbjct: 68 RVVGDVIGKYHPHGDSAVYYTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRM 127 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 +++A +L +++D VDF Y+ + P V P++ PNLL NG+SGIAVGMAT+IP HN+ Sbjct: 128 SKIAHELLADLEKDTVDFVPNYDGTEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ + LA I++ I+IE L+EYI GPDFPT II R I E+YR GRG +RAR Sbjct: 188 SEVIDGCLAYIEDENITIEGLMEYIPGPDFPTAAII-NGRRGIEEAYRTGRGKVYIRARA 246 Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314 VE + G I+V EIPYQV K+RLIEKIAEL+ KR+ + +RDES +D +RIV+ Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K ++ ++++ +++ L+ ++ F +NM LS G+ P+++ L IL ++ HRREV+ R Sbjct: 307 IKRDAVG-EVVLNNLYSLTQLQVTFGINMVALSQGQ-PKLLNLKDILVAFVRHRREVVTR 364 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK----------------PVMV 418 R+ F ++ R IL+ L IA NID II +IR P M+ Sbjct: 365 RTIFELRKARDRAHILEALAIALANIDPIIELIRRAATPAEAKAGLIASSWELGNVAAML 424 Query: 419 SR---------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457 R + LTE Q AIL+LRL+ L LE ++ E LL Sbjct: 425 ERAGGDAARPEWLEAEFGIRDGKYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLTV 484 Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517 ++ +L + ++ I E+ +KE ++ RRT E++ + +I + Sbjct: 485 IAELIFILENPERLMEVIREELVAIKEQYNDV-----RRT---EITANTSDINIEDLINQ 536 Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569 E + V +S++G+++ + + SA KE D + L A+T D IL S+ Sbjct: 537 EDVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSR 596 Query: 570 GKAYTLPAGNLL-SGRG-HGEAIQLLIDLNHNQDI 602 G+ Y + L + RG G I L+ L N+ I Sbjct: 597 GRLYWMKVYQLPEASRGARGRPIVNLLPLEPNERI 631 >gi|301165376|emb|CBW24947.1| DNA gyrase subunit A [Bacteriovorax marinus SJ] Length = 832 Score = 404 bits (1039), Expect = e-110, Method: Compositional matrix adjust. Identities = 230/584 (39%), Positives = 360/584 (61%), Gaps = 35/584 (5%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 N+ ++++ ++ YL YA+S I RA+PD+RDG KPVHRR ++AM + F KS Sbjct: 17 NIAPIAIQEEMKNCYLDYAMSVIIGRALPDVRDGLKPVHRRALYAMYSLNNYHNKPFLKS 76 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 AR+VG+VIGK HPHGD +VY++LVR+AQ F RY L+ GQGNFG+IDGD+AAA RYTE R Sbjct: 77 ARVVGDVIGKYHPHGDSAVYNTLVRMAQDFSMRYVLVDGQGNFGSIDGDAAAAMRYTEIR 136 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 M +++E +L+ +D+D VD++ Y++ EP V P+K PNLL NG+SGIAVGMAT+IP HN Sbjct: 137 MKKLSEEMLRDLDKDTVDWQPNYDDSLKEPKVLPTKVPNLLVNGSSGIAVGMATNIPPHN 196 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 + EI A LIDN ++++ +L+++I GPDFPT G I E I +Y GRG ++RA+ Sbjct: 197 LTEIMSALTELIDNRDMTVNELMKHIPGPDFPTAGSI-HGTEGIKSAYHTGRGIIQIRAK 255 Query: 256 WCVEEVGRGSW-CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVL 313 +E G+ IV+TE+PYQV K++LIEKIA+L+ K I + DIRDES+ E +R+V+ Sbjct: 256 VDIEVYGKQERERIVITELPYQVNKAKLIEKIADLVNNKDIEGISDIRDESSREGIRVVI 315 Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373 K + +++ ++ + ++ F + +S G P+VM L +L+ ++ HRREV+ Sbjct: 316 DLKKGEI-ASVIVNRLYKATQLQVSFGIIFLSISNGS-PKVMNLKEMLECFIDHRREVVI 373 Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVDA 430 RR+ F ++ R IL+GL +A NIDE++ I++ + P K ++SRFSL+E Q A Sbjct: 374 RRTVFELKKAKERAHILEGLKVAVENIDEVVEIVKKSEGPADAKAKLISRFSLSEIQSQA 433 Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490 IL++RL+ L LE +I ++ + ++ E +++ +L S I E +E+ E + Sbjct: 434 ILDMRLQRLTGLERDKIIADYEAIMKEIARLEEILGSEDLIRGIIKTEFQEINENYGDE- 492 Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDS 550 RRT V++AD+ ++ +++ E + V I+++G+I+ + ++D + G Sbjct: 493 ----RRTAI--VAKADEIQIED-LVKNEDVLVTITHKGYIKRM---TMDTYRTQKRGGKG 542 Query: 551 LKIA-----------LHAHTTDRILLLSTDG-----KAYTLPAG 578 +K A A+T IL + G K Y +P G Sbjct: 543 VKGASNADEDFFTDIFTANTHSTILFFTNRGSVFSKKVYNIPEG 586 >gi|58001765|gb|AAW60659.1| DNA gyrase subunit A [Gluconobacter oxydans 621H] Length = 924 Score = 404 bits (1039), Expect = e-110, Method: Compositional matrix adjust. Identities = 234/587 (39%), Positives = 340/587 (57%), Gaps = 46/587 (7%) Query: 30 YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89 YLAYA+S I RA+PD+RDG KPVHRRI++AM E G ++KSAR VG+V+GK HPH Sbjct: 5 YLAYAMSVIVSRALPDVRDGLKPVHRRILYAMRESGFTADKPYRKSARAVGDVMGKYHPH 64 Query: 90 GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDE 149 GD S+YD++VR+AQ + R LI GQGNFG++DGDS AA RYTEAR+ + + +L ++ Sbjct: 65 GDSSIYDAMVRMAQHWSMRVKLIDGQGNFGSVDGDSPAAMRYTEARLAKASSFLLDDIER 124 Query: 150 DAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDN 209 D VDF+ Y+E ++EP V P+ FPNLL NG +GIAVGMAT+IP+HN E+ +A LA+I N Sbjct: 125 DTVDFQPNYDESENEPKVLPAVFPNLLVNGAAGIAVGMATNIPTHNPGEVIDATLAMIAN 184 Query: 210 PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIV 269 P I +++L++ I GPDFPTGGII+ R I +Y GRG VRAR +EE+ + I+ Sbjct: 185 PAIELDELMQIIPGPDFPTGGIIM-GRSGIRRAYETGRGSIPVRARAEIEEIRKDRQAII 243 Query: 270 VTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESI 329 +TEIPYQV K+ L EKIA+L+ +K I + DIRDES V+ R PD+++ + Sbjct: 244 ITEIPYQVNKATLQEKIADLVRSKEIEGISDIRDESDRSGMRVVIELKRDATPDVVLNQL 303 Query: 330 FMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEI 389 + + ++T F NM L G+ P+ M L IL+ +L R EV+ RR+ F + R + Sbjct: 304 YRFTQLQTSFSANMLALDDGK-PRTMGLKDILEAFLRFREEVILRRARFDLNKARDRGHL 362 Query: 390 LKGLLIAYLNIDEIIAIIRN----------------------------EDKPKPVMVSRF 421 L GL++A NIDE+IA+IR D+ ++ + Sbjct: 363 LVGLVLAVANIDEVIALIRAAPDAATARESLMAREWDASEVVPLLELIHDEGNVIIDGKV 422 Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481 LTE Q IL LRL+ L LE +I+ EL + +KI LL + + ++ +RE Sbjct: 423 RLTEAQARGILELRLQRLTGLEREKIQGELGEV---AQKIGELLAIIESRPRRMEV-MRE 478 Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSL 533 E+ + ++ R T E+S A +++IE + V I+ G+I RS Sbjct: 479 --ELLAARAEVATPRVT--EISDALGDQTDESLIEPGQMVVTITRDGFIKRTPLEVFRSQ 534 Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL 580 +A + D + + +AHT ++ S+ GKAY + +L Sbjct: 535 NRGGRGRTASGRRGDDIIVRSFNAHTHQWVMFFSSGGKAYRMKVWHL 581 >gi|257485847|ref|ZP_05639888.1| DNA gyrase subunit A [Pseudomonas syringae pv. tabaci ATCC 11528] gi|320323352|gb|EFW79440.1| DNA gyrase subunit A [Pseudomonas syringae pv. glycinea str. B076] gi|320327549|gb|EFW83561.1| DNA gyrase subunit A [Pseudomonas syringae pv. glycinea str. race 4] gi|331012936|gb|EGH92992.1| DNA gyrase subunit A [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 928 Score = 404 bits (1039), Expect = e-110, Method: Compositional matrix adjust. Identities = 236/603 (39%), Positives = 358/603 (59%), Gaps = 57/603 (9%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 V++ L++ YL YA+S I RA+PD RDG KPVHRR++ AMSE+G D+ +KKSAR+V Sbjct: 11 VNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDWNKPYKKSARVV 70 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG++DGD+AAA RYTE RMT++ Sbjct: 71 GDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRYTEVRMTKL 130 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A +L + ++ VD+ Y+ + P V P++ PNLL NG+SGIAVGMAT+IP HN+ E+ Sbjct: 131 AHELLADLHKETVDWVPNYDGTEMIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHNLGEV 190 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 + LALIDNPE++I++L++YI GPDFPT II R I+E+YR GRG +RAR VE Sbjct: 191 IDGCLALIDNPELTIDELMQYIPGPDFPTAAII-NGRAGIIEAYRTGRGRIYMRARSIVE 249 Query: 260 EVGR--GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317 ++ + G IV+TE+PYQ+ K+RLIEKIAEL+ K++ + ++RDES +D V+ Sbjct: 250 DIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKLEGITELRDESDKDGMRVVIELR 309 Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377 R P++++ +++ + +++ F +N+ L GR P+++ L +L+ ++ HRREV+ RR+ Sbjct: 310 RGEVPEVVLNNLYAQTQLQSVFGINIVALIDGR-PRILNLKDLLEAFVRHRREVVTRRTV 368 Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV----------------MVSR- 420 F ++ R IL+G +A NID +IA+I+ P MV R Sbjct: 369 FELRKARERGHILEGQAVALSNIDPVIALIKASPTPAEAKEALIKTPWESSAVVEMVERA 428 Query: 421 --------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEK 460 + L+ Q AIL LRL L LE ++ E +L + + Sbjct: 429 GADSCRPENLDPQYGLREGKYFLSPEQAQAILELRLHRLTGLEHEKLLGEYQEILNQIGE 488 Query: 461 IDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI 520 + +LNS + I E+ ++ + + RRT + +R D TL + E+E + Sbjct: 489 LIRILNSATRLMEVIREELEVIRSEYGDA-----RRTEILD-ARLD-LTLGDLITEEERV 541 Query: 521 TVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKA 572 V IS+ G+ ++ + SA K+ D + L A++ +L+ S+ GK Sbjct: 542 -VTISHGGYAKTQPLAVYQAQRRGGKGKSATGIKDEDYIAHLLVANSHTTLLMFSSKGKV 600 Query: 573 YTL 575 Y L Sbjct: 601 YWL 603 >gi|282857631|ref|ZP_06266848.1| DNA gyrase, A subunit [Pyramidobacter piscolens W5455] gi|282584545|gb|EFB89896.1| DNA gyrase, A subunit [Pyramidobacter piscolens W5455] Length = 871 Score = 404 bits (1039), Expect = e-110, Method: Compositional matrix adjust. Identities = 255/701 (36%), Positives = 409/701 (58%), Gaps = 31/701 (4%) Query: 30 YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89 YL YA+S I RA+PD RDG KPV RR+++ M +G+ A+KKSAR+VGEV+GK HPH Sbjct: 22 YLDYAMSVIVGRALPDARDGLKPVQRRVLYGMLGLGIRHNQAYKKSARVVGEVMGKYHPH 81 Query: 90 GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDE 149 GD S+YD++VRLAQP+ RYPL+ GQGNFG++DGD AAA RYTEAR ++ EL+LQ +DE Sbjct: 82 GDASIYDTMVRLAQPWNLRYPLVDGQGNFGSVDGDGAAAMRYTEARFAELGELMLQDIDE 141 Query: 150 DAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDN 209 D VD+ ++E EP+ PS PNLL NG++GIAVGMAT++P HN+ E+ +A LID+ Sbjct: 142 DTVDWGPNFDESLKEPLTLPSLVPNLLVNGSTGIAVGMATNMPPHNLGEVIDALCCLIDH 201 Query: 210 PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIV 269 PE + +L+ Y+ GPDFPTGGII+ RE IV++YR GRG VR R CV E G+ +V Sbjct: 202 PEAELGELMNYLPGPDFPTGGIIM-GREGIVDAYRTGRGKIIVRGR-CVVEEGKRRTSVV 259 Query: 270 VTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFPKNRSLDPDLLMES 328 +TEIPY V K+ LIE IA+ + I + D+RDES + +RIVL NR DP+L+ Sbjct: 260 ITEIPYMVNKTTLIEGIAKCVQEHTIDGVSDLRDESDRQGLRIVL-DLNRDGDPELVQRQ 318 Query: 329 IFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVE 388 ++ + M++ F + +N+ + + P + L +L+ +L +RR+V+ RR++FR+ R Sbjct: 319 LYNRTLMQSTFGV-INLTLVDQRPVELGLKSMLEVFLDYRRDVVRRRTAFRLAKAQEREH 377 Query: 389 ILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVDAILNLRLRSLRKLEEY 445 I++GL A IDE+I IIR + + + +E Q AIL++RL+ L LE Sbjct: 378 IIEGLCRALDMIDEVIRIIRGAQTAEEASHGLTEQLQFSEKQAQAILDMRLQRLTGLERD 437 Query: 446 QIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRA 505 ++ +E+ LLA+ + +L K I E+ E++ F G +R T ++ Sbjct: 438 KLTAEMAQLLADIARYQEILADAKTLDGVIRDELAELRHKF------GDKRRTEIQLHVE 491 Query: 506 DKATLQQAMIEKEPITVVISNRGWIRS--LKSHSVD------LSALHFKEGDSLKIALHA 557 + + ++ +E I + +S G++R LK ++V + E D + + Sbjct: 492 STSDSYEDLMPEENIVITLSKDGYLRRSLLKDYNVQNRGGKGRRGANLHEEDQVAGMVVT 551 Query: 558 HTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAF--VYDSTCK 613 T + +LL ++ G+ + + G+++ + G G ++ I L+ + +V D+ Sbjct: 552 TTHNDVLLFTSRGRVFAI-KGHMVPETKSGKGRKVEQFISLSEGETVVEILGRFPDNCST 610 Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLI 672 +++++ +G A +++SE+ TR G+ + + + + + G D + +V + L Sbjct: 611 VVLITRRGIAKRMDKSELQNLTRAGRQIMTLDDGDDIARIRCTNGLDDLFLVSAMGRGLR 670 Query: 673 FSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712 S D+I M R +GV+ + K G ++I ++ G + I Sbjct: 671 ISEDEIRTMGRSARGVK--AMKLGKDDEIISCEVIAGDSRI 709 >gi|330502868|ref|YP_004379737.1| DNA gyrase subunit A [Pseudomonas mendocina NK-01] gi|328917154|gb|AEB57985.1| DNA gyrase subunit A [Pseudomonas mendocina NK-01] Length = 922 Score = 404 bits (1039), Expect = e-110, Method: Compositional matrix adjust. Identities = 239/603 (39%), Positives = 360/603 (59%), Gaps = 57/603 (9%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 V++ L++ YL YA+S I RA+PD RDG KPVHRR+++AMSE+G D+ +KKSAR+V Sbjct: 11 VNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMSELGNDWNKPYKKSARVV 70 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGD +VYD++VR+AQ F RY L+ GQGNFG++DGD+AAA RYTE RMT++ Sbjct: 71 GDVIGKYHPHGDTAVYDTIVRMAQDFSLRYLLVDGQGNFGSVDGDNAAAMRYTEVRMTKL 130 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A +L ++++ VD+ Y+ + P V P+K PNLL NG+SGIAVGMAT+IP HN+ E+ Sbjct: 131 AHELLADLEKETVDWVPNYDGTEQIPAVMPTKVPNLLVNGSSGIAVGMATNIPPHNLTEV 190 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 + LAL+DN E+++++L++YI GPDFPT GII R I+E+YR GRG VRAR VE Sbjct: 191 IDGCLALMDNAELTVDELMQYIPGPDFPTAGII-NGRAGIIEAYRTGRGRIYVRARVEVE 249 Query: 260 EVGR--GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317 ++ + G +VVTE+PYQ+ K+RLIEKIAEL+ K+I + ++RDES +D V+ Sbjct: 250 DIDKVGGRQQLVVTELPYQLNKARLIEKIAELVKEKKIEGITELRDESDKDGMRVVIELR 309 Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377 R P++++ +++ + M++ F +N+ L G+ P+ M L +L+ ++ HRREV+ RR+ Sbjct: 310 RGEVPEVVLNNLYAQTQMQSVFGINVVALVDGQ-PKTMNLKDMLEVFVRHRREVVTRRTV 368 Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK----------------PVMVSR- 420 + ++ R IL+G +A NID +I +I++ P MV R Sbjct: 369 YELRKARERGHILEGQAVALSNIDPVIELIKSSPTPAEAKERLIATAWASSAVEAMVERA 428 Query: 421 --------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEK 460 + L+ Q AIL LRL L LE ++ E +LA + Sbjct: 429 GADSCRPEGLDAQYGLRDGKYYLSPEQAQAILELRLHRLTGLEHEKLLGEYQEILALIGE 488 Query: 461 IDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI 520 + +L + ++ I E+ +VK F + RRT SR D T+ + E+E + Sbjct: 489 LIRILTNPERLMEVIREELEKVKAEFGDA-----RRTEII-ASRQD-LTIADLITEEERV 541 Query: 521 TVVISNRGWIRSLKSHSVDL--------SALHFKEGDSLKIALHAHTTDRILLLSTDGKA 572 V IS+ G+ +S + + SA K+ D ++ L A++ +LL S+ GK Sbjct: 542 -VTISHGGYAKSQPLAAYEAQRRGGKGKSATGVKDEDYVEHLLVANSHATLLLFSSKGKV 600 Query: 573 YTL 575 Y L Sbjct: 601 YWL 603 >gi|126726444|ref|ZP_01742285.1| DNA gyrase subunit A [Rhodobacterales bacterium HTCC2150] gi|126704307|gb|EBA03399.1| DNA gyrase subunit A [Rhodobacterales bacterium HTCC2150] Length = 924 Score = 404 bits (1039), Expect = e-110, Method: Compositional matrix adjust. Identities = 243/611 (39%), Positives = 351/611 (57%), Gaps = 51/611 (8%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 VS+ ++ YL YA+S I RAIPDLRDG KPVHRRI++AM E G +++KSAR V Sbjct: 26 VSIVDEMKTSYLDYAMSVIVSRAIPDLRDGLKPVHRRILYAMYEAGNTHEKSYRKSARAV 85 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+V+GK HPHGD ++YD+LVR+AQ F PL+ GQGNFG++DGD+ AA RYTE RM + Sbjct: 86 GDVMGKYHPHGDSAIYDALVRMAQDFSMSLPLLDGQGNFGSMDGDNPAAMRYTEVRMDKP 145 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 + +L +++D VDF+D Y+ +D EP V PS+FPN+L NG GIAVGMAT+IP HN+ EI Sbjct: 146 SASLLADIEKDTVDFQDNYDGKDREPSVLPSRFPNMLVNGAGGIAVGMATNIPPHNLGEI 205 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 +A LALI NP+++ E+L++Y+ PDFPTGGII+ R ++Y GRG +RA+ VE Sbjct: 206 IDATLALITNPDLTSEELIQYVPAPDFPTGGIIL-GRTGARKAYIEGRGSVVIRAKTRVE 264 Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKNR 318 E+ + + IV+ EIPYQV K+ LIEKIAE + KRI + ++DES + VR+V+ K R Sbjct: 265 EIRKDRYAIVLDEIPYQVNKASLIEKIAETVRDKRIDGISHVQDESDRNGVRVVVELK-R 323 Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378 ++++ +F + M+T F NM L+ GR P+ + L L +L R EV+ RR++F Sbjct: 324 DATAEVVLNQLFRFTPMQTSFGCNMLALNGGR-PEQLTLRRFLTSFLDFREEVVARRTAF 382 Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP----KPVMVSR-------------- 420 ++ R +L GL +A N+DEI+A IR P +M R Sbjct: 383 ELRKARERSHVLCGLAVAVSNVDEIVATIRTSADPAEARAKLMTRRWPATDILEYIALID 442 Query: 421 -----------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGK 469 ++L+E Q AIL LRL+ L L ++ EL L A + +L S + Sbjct: 443 DPTHRANDDGTYNLSETQARAILELRLQRLTALGVSEVTDELQVLAANIREYLEILASRE 502 Query: 470 QQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW 529 + I E++EVK+ F+ RR+ + S + +IE E + V ++ G+ Sbjct: 503 RIMGIITDELQEVKDKFAVP-----RRSEIIDWS---GDMEDEDLIESEDMVVTVTATGY 554 Query: 530 I--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL 581 I R+ K LS + KE D + A+T ++L +T G Y L L Sbjct: 555 IKRTPLADFRAQKRGGKGLSGMSTKEDDVVTNLFVANTHTQLLFFTTAGMVYKLKTWRLP 614 Query: 582 SG--RGHGEAI 590 G G+AI Sbjct: 615 QGGRTAKGKAI 625 >gi|323255479|gb|EGA39242.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] Length = 554 Score = 404 bits (1039), Expect = e-110, Method: Compositional matrix adjust. Identities = 231/554 (41%), Positives = 336/554 (60%), Gaps = 50/554 (9%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + V++ L+ YL YA+S I RA+PD+RDG KPVHRR+++AM+ +G D+ A+KKSA Sbjct: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG+IDGDSAAA RYTE R+ Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 ++A ++ ++++ VDF D Y+ + P V P+K PNLL NG+SGIAVGMAT+IP HN+ Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ LA IDN +ISIE L+E+I GPDFPT II R I E+YR GRG +RAR Sbjct: 188 TEVINGCLAYIDNEDISIEGLMEHIPGPDFPTAAII-NGRRGIEEAYRTGRGKVYIRARA 246 Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314 VE + G I+V EIPYQV K+RLIEKIAEL+ KR+ + +RDES +D +RIV+ Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKDGMRIVIE 306 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K ++ ++++ +++ + ++ F +NM L G+ P++M L I+ ++ HRREV+ R Sbjct: 307 VKRDAVG-EVVLNNLYSQTQLQVSFGINMVALHHGQ-PKIMNLKDIISAFVRHRREVVTR 364 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----------- 420 R+ F ++ R IL+ L IA NID II +IR P K ++SR Sbjct: 365 RTIFELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAALISRPWDLGNVAAML 424 Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457 + LTE Q AIL+LRL+ L LE ++ E LL + Sbjct: 425 ERAGDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQ 484 Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517 ++ +L S + I E+ +++ F G R T + AD + +I + Sbjct: 485 IAELLHILGSADRLMEVIREEMELIRDQF------GDERRTEITANSADINI--EDLISQ 536 Query: 518 EPITVVISNRGWIR 531 E + V +S++G+++ Sbjct: 537 EDVVVTLSHQGYVK 550 >gi|331089208|ref|ZP_08338110.1| DNA gyrase subunit A [Lachnospiraceae bacterium 3_1_46FAA] gi|330405760|gb|EGG85289.1| DNA gyrase subunit A [Lachnospiraceae bacterium 3_1_46FAA] Length = 853 Score = 404 bits (1039), Expect = e-110, Method: Compositional matrix adjust. Identities = 245/666 (36%), Positives = 383/666 (57%), Gaps = 36/666 (5%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 + V V L+ +E Y+ YA+S I RA+PD+RDG KPV RRI+++M E+ +K Sbjct: 7 DKVHEVDLKKTMETSYIDYAMSVIAARALPDVRDGLKPVQRRILYSMIELNNGPDKPHRK 66 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 ARIVG+ +GK HPHGD S+Y +LV LAQ + RYPL+ G GNFG++DGD AAA RYTEA Sbjct: 67 CARIVGDTMGKYHPHGDSSIYGALVNLAQEWSTRYPLVDGHGNFGSVDGDGAAAMRYTEA 126 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 R+++++ + +++D VDF ++E + EPVV PS+FPNLL NGTSGIAVGMAT+IP H Sbjct: 127 RLSKISMEMTADINKDTVDFVPNFDETEKEPVVLPSRFPNLLVNGTSGIAVGMATNIPPH 186 Query: 195 NVQEICEAALALID-----NPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249 N++E+ A + +ID N E S+E +L+ I GPDFPTG I+ +R I E+YR GRG Sbjct: 187 NLREVINAVVKIIDDQIDENGETSMEDILQIIKGPDFPTGAEILGTR-GIEEAYRTGRGK 245 Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309 RVRA +E + G I+VTE+P+ V K+RLIEKIAEL+ K++ + D+ D+S+ + Sbjct: 246 IRVRAVTNIEPMQNGKNRIIVTELPFMVNKARLIEKIAELVRDKKVDGITDLSDQSSREG 305 Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369 + R ++P++++ ++ + ++ F + M L + P+VM + +LK +L H+ Sbjct: 306 MRICIELRRDVNPNVILNQLYKHTQLQDTFGVIMLAL-VNNEPKVMNILDMLKYYLKHQE 364 Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTEN 426 EV+ RR+ + + + R IL+GLLIA NIDE+I IIR N + K ++SRF L+E Sbjct: 365 EVVTRRTKYDLNKAEERAHILQGLLIALDNIDEVIKIIRGSKNVQEAKAELISRFDLSEV 424 Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486 Q AI+++RLR+L LE ++++E L+ + E+ ++L K I KEI Sbjct: 425 QAQAIVDMRLRALTGLEREKLEAEYAELMKKIEEYRAILADRKLLLGVIR------KEIL 478 Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD------- 539 S G R T D + + +I +E + + ++N G+I+ + + Sbjct: 479 VISEKYGDERRTHIGYDEFDIS--MEDLIPRENVVITVTNMGYIKRMSMDTFKSQNRGGK 536 Query: 540 -LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEAIQLLIDL 596 + + E D ++ + I+ + G+ Y L A + +GR G A+ L+ L Sbjct: 537 GIKGMQTLEEDFIRELFVTTSHHYIMFFTNKGRVYRLKAYEIPEAGRTARGTAVINLLQL 596 Query: 597 NHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS--EEKMK 651 ++ I Y+ L + + KG +V+++ I KT L S E+ + Sbjct: 597 MPDEKITATIPIKEYEDGKYLFMATKKG---LVKKTPIQDYMNVRKTGLAAISLREDDLL 653 Query: 652 LVVKVT 657 + VKVT Sbjct: 654 IEVKVT 659 >gi|292492652|ref|YP_003528091.1| DNA gyrase subunit alpha [Nitrosococcus halophilus Nc4] gi|291581247|gb|ADE15704.1| DNA gyrase, A subunit [Nitrosococcus halophilus Nc4] Length = 846 Score = 404 bits (1039), Expect = e-110, Method: Compositional matrix adjust. Identities = 270/800 (33%), Positives = 427/800 (53%), Gaps = 77/800 (9%) Query: 13 VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72 + + V V++ +++ YL YA+S I RA+PD RDG KPVHRR+++AM E+G D+ + Sbjct: 4 IAQEVFPVNIEDEMKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMQELGNDWNKPY 63 Query: 73 KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132 KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF RYPL+ GQGNFG+IDGD AA RYT Sbjct: 64 KKSARVVGDVIGKYHPHGDAAVYDAIVRMAQPFSMRYPLVDGQGNFGSIDGDPPAAMRYT 123 Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192 E RM ++A +L ++++ VDF Y+E + EP V P++ PNLLANG+SGIAVGMAT+IP Sbjct: 124 EVRMAKIAHELLADLNKETVDFVPNYDESEYEPAVLPTRIPNLLANGSSGIAVGMATNIP 183 Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252 HN+ E+ A +ALID+P + I ++ +I GPDFPT GI+ SR I E+Y GRG + Sbjct: 184 PHNLGEVLSACIALIDDPSLDIAGIMAHIPGPDFPTAGIVNGSR-GIQEAYLTGRGRIFL 242 Query: 253 RARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311 RAR VE + G I+VTE+PY V K+RL+EKI EL+ K+I + +RDES ++ Sbjct: 243 RARTHVETDEASGRQSIIVTELPYMVNKARLLEKIGELVKEKKIEGIVGLRDESDKEGMR 302 Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371 ++ R+ P++++ +++ + ++T F +NM L G+ PQV+ L L+ +L HR+EV Sbjct: 303 MVVELRRNEMPEVVLNHLYLHTQLQTVFGINMVALVDGQ-PQVLNLKLALEAFLRHRQEV 361 Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV--------------- 416 + RR+ F ++ R +L+GL IA NID +IA+I+ P Sbjct: 362 VTRRTVFELRKARERAHVLEGLAIALTNIDPVIALIKASSSPSEARDGLIARSWPPGVVI 421 Query: 417 -MVSR---------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNL 454 M+ R + L+ Q AIL++RL L LE+ +I E + Sbjct: 422 DMLQRAGAESSRPEGLEAVYGLQEGGYRLSPAQAQAILDMRLHRLTGLEQGKIIDEYQQV 481 Query: 455 LAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAM 514 + ++ +L + ++ I E+ E+++ + G R T + + D + + Sbjct: 482 IELISELLEILANPERLMAVIREELVEMRQQY------GELRRTEIQYNHVDLRL--EDL 533 Query: 515 IEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLL 566 I++E + V +S+ G+ RS K SA KE D + A+T D +L Sbjct: 534 IQEENVVVTLSHTGYAKYQALDAYRSQKRGGKGKSATAMKEEDFIDKLFIANTHDTLLCF 593 Query: 567 STDG-----KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVS 618 S+ G K Y LP G + G+ I L+ L + I T ++ + +V+ Sbjct: 594 SSRGKVYWKKVYELPQGTRTA---RGKPIVNLLPLEEGERINTVLPIREFEEGKYVFMVT 650 Query: 619 SKGNAFIVEESEIIANTR-KGKTFLKVSSEEKMKLVVKVTGD---HVAVVGENRKLLIFS 674 + G +V+++ + +R + + + E +LV D + + K++ FS Sbjct: 651 ASG---VVKKTSLAVFSRPRPSGIIALELREGDQLVGADLTDGEQEIMLFSSGGKVIRFS 707 Query: 675 IDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKR 733 ++ M R +GV+ VI I T + + Y + L R Sbjct: 708 EQKVRPMGRTARGVKGMELPPE--HRVIALIIARNGTILTATELGYGKRTAIAEYRLQGR 765 Query: 734 GGVGSLVPKGFPRSGKFLSS 753 GG G + + PR+G+ + + Sbjct: 766 GGQGIISIQTTPRNGQVVGA 785 >gi|229551098|ref|ZP_04439823.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus rhamnosus LMS2-1] gi|258538198|ref|YP_003172697.1| DNA gyrase subunit A [Lactobacillus rhamnosus Lc 705] gi|229315559|gb|EEN81532.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus rhamnosus LMS2-1] gi|257149874|emb|CAR88846.1| DNA gyrase subunit A [Lactobacillus rhamnosus Lc 705] Length = 870 Score = 404 bits (1039), Expect = e-110, Method: Compositional matrix adjust. Identities = 242/712 (33%), Positives = 404/712 (56%), Gaps = 53/712 (7%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 E + V+L + + +L YA+S I RA+PD+RDG KPV RRI++ M+E+G+ +K Sbjct: 6 ESRITNVNLGETMRKSFLEYAMSVIVARALPDVRDGLKPVQRRILYGMNELGVTPEKPYK 65 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSARIVG+V+GK HPHGD S+Y+ LVR+AQ F RY L+ G GNFG++DGD AAA RYTE Sbjct: 66 KSARIVGDVMGKYHPHGDSSIYEGLVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAMRYTE 125 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 ARM+++A +L+ +++D +DF+D Y+ + EPVV P++FPNLL NG +GIAVGM T+IP Sbjct: 126 ARMSKIAVEMLRDINKDTIDFQDNYDGTEKEPVVLPARFPNLLVNGATGIAVGMTTNIPP 185 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E A L+D+P+ + L++ + GPDFPTGG+++ + I +Y GRG +R Sbjct: 186 HNLSETISALHVLMDHPDATTADLMQALPGPDFPTGGVVM-GKSGIRHAYETGRGTIVLR 244 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313 + V+ G IV+TEIPY V K++++E+IA+L+ K+I + +RDES D ++ Sbjct: 245 GKVDVQTEKSGRERIVITEIPYMVNKAKMVERIADLVHEKKIDGIVTLRDESDRDGMRIV 304 Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373 R +++ +++ L+ ++T F NM + G P+V+ L IL+ +L H+ V+ Sbjct: 305 IDVRRDASASVILNNLYKLTPLQTGFSFNMVAIVNG-APKVLSLKQILQYYLDHQENVIR 363 Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDA 430 RR+ + ++ R IL+GL IA +IDEII IIR+ DK K +++ +F+L++ Q A Sbjct: 364 RRTQYDLKKAKAREHILEGLRIALDHIDEIITIIRSSETGDKAKVILMDKFNLSDKQSQA 423 Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490 IL++RL L LE +++SE ++ A +L ++ I E+ ++++ F Sbjct: 424 ILDMRLVRLTGLERDKVESEYKDVEAAIADYTDILAKPERVHQIIYDELLDIQKKFGD-- 481 Query: 491 DLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSLKSHSVD--------LS 541 +RRT E+ + +L+ + +IE+E + + +S+ G+++ L + + Sbjct: 482 ---KRRT---ELLVGEVLSLEDEDLIEQEDVVITLSHNGYVKRLATSEFKTQNRGGRGIQ 535 Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAY---------------TLPAGNLLSGRGH 586 ++ + D ++ + T D +L + GK Y +P NLL G G Sbjct: 536 GMNVHDDDFVEHLISTSTHDVLLFFTNKGKVYRSKGYEIPEYSRTAKGIPIINLL-GVGA 594 Query: 587 GEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR-KGKTFLKVS 645 GE IQ +I++ H D +++ T +V + F AN R G L + Sbjct: 595 GEKIQTVINV-HEGDNDDRYLFFVTQNGVVKRTPVKEF--------ANIRSNGLIALNLK 645 Query: 646 SEEKMKLVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSRG----KGVRLQSY 692 ++++ V+ +G ++G + + F + M R +G+RL+ + Sbjct: 646 DQDELNNVILTSGQDNILIGTHLGYSVAFKEQDVRSMGRTATGVRGIRLRDH 697 >gi|87119282|ref|ZP_01075180.1| DNA gyrase subunit A [Marinomonas sp. MED121] gi|86165673|gb|EAQ66940.1| DNA gyrase subunit A [Marinomonas sp. MED121] Length = 893 Score = 404 bits (1039), Expect = e-110, Method: Compositional matrix adjust. Identities = 284/793 (35%), Positives = 423/793 (53%), Gaps = 87/793 (10%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + VS+ L+ YL YA+S I RA+PD+RDG KPVHRR++ AM E D+ A+KKSA Sbjct: 8 ITPVSIENELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEEKNDWNKAYKKSA 67 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 RIVG VIGK HPHGD +VYD++VRLAQPF RY L+ GQGNFG++DGD+ AA RYTE RM Sbjct: 68 RIVGNVIGKYHPHGDTAVYDAIVRLAQPFSMRYTLVDGQGNFGSVDGDNPAAMRYTEIRM 127 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 ++A L ++++ VDF Y+ + P V P++ P LL NG+SGIAVGMAT+IP HN+ Sbjct: 128 EKIAHNFLMDLEKETVDFVPNYDGTEHMPEVMPTRIPGLLVNGSSGIAVGMATNIPPHNL 187 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ + +LALIDN I+I++L+EYI GPDFPT I R IV++Y+ GRG +RAR Sbjct: 188 SEVIDGSLALIDNEAITIDELMEYIPGPDFPTSAFI-NGRAGIVDAYKTGRGKIYMRARH 246 Query: 257 CVEEVGRGSW-CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315 +E + +G+ IV TEIPYQ+ K+R+IEKIAEL+ K++ + ++RDES +D ++ Sbjct: 247 HIEPMEKGNREAIVFTEIPYQLNKARVIEKIAELVKDKKLEGISELRDESDKDGMRIVIE 306 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 R + D+++ ++F+ + ++ F +NM L GR P+++ L +L+ ++ HRREV+ RR Sbjct: 307 LRRGENADVVVNNLFIQTQLQGVFGINMVALVDGR-PELLNLKQVLECFVKHRREVVTRR 365 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN-----EDKPKPV-----------MVS 419 + F ++ R +L+GL +A NI+EII +IR E K K V M+ Sbjct: 366 TIFELRKARERGHVLEGLAVALANIEEIIELIRQSPTSAEAKEKLVSKAWAPGDVSAMLE 425 Query: 420 R---------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458 R + L+ Q AIL+LRL L LE ++++E L+ Sbjct: 426 RAGTDACRPDDLPEEFGFKDGSYYLSPVQAQAILDLRLHRLTGLEHEKLQNEYKALIELI 485 Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518 ++ +L S + I E+ E+K F G R T SR D +I++ Sbjct: 486 AELLHILASPARLMEVIREELEEIKAQF------GDVRRTEILTSRQDLTVAD--LIDEA 537 Query: 519 PITVVISNRGWIRS--LKSHSVDL------SALHFKEGDSLKIALHAHTTDRILLLSTDG 570 P+ V ISN G+ +S L+ + S+ K+ D + L + D I+L S G Sbjct: 538 PMVVTISNTGYAKSQPLEEYQAQRRGGRGKSSSSMKDEDHISHLLVTSSHDTIMLFSNFG 597 Query: 571 KAYTL---------------PAGNLLSGRGHGEAIQLLIDL-----NHNQDIVTAFVYDS 610 K Y L P NLL GE+I L+ L + +D T D+ Sbjct: 598 KVYWLRVFEIPVASRNAKGRPIVNLLP-LSEGESISALLPLVAPEKSDAEDAETEVSEDA 656 Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKT-FLKVSSEEKMKLV-VKVT--GDHVAVVGE 666 + + ++ G V+++ + R T + +S +E +LV V +T D + +V Sbjct: 657 ESFIFMATANGT---VKKTAMQHFARPRSTGLIALSLDESDELVGVSITNGNDDIMLVSS 713 Query: 667 NRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYN-RSEN 724 K + F + M R GVR G V EG++ + + Y R+ Sbjct: 714 TGKTIRFKESDVRAMGRTAAGVRGIKLAAEGAKVVSLIVPEEGMSVLTACEHGYGKRTAI 773 Query: 725 DLLGWLGKRGGVG 737 D G RGG G Sbjct: 774 DDFPVYG-RGGQG 785 >gi|288573325|ref|ZP_06391682.1| DNA gyrase, A subunit [Dethiosulfovibrio peptidovorans DSM 11002] gi|288569066|gb|EFC90623.1| DNA gyrase, A subunit [Dethiosulfovibrio peptidovorans DSM 11002] Length = 814 Score = 404 bits (1038), Expect = e-110, Method: Compositional matrix adjust. Identities = 255/683 (37%), Positives = 390/683 (57%), Gaps = 26/683 (3%) Query: 30 YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89 YL YA+S I RA+PD RDG KPV RRI+ AM E+GL ++KKSAR+VGE +GK HPH Sbjct: 23 YLDYAMSVIVGRALPDARDGLKPVQRRILFAMQELGLRHNQSYKKSARVVGETMGKYHPH 82 Query: 90 GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDE 149 GD ++YD++VRLAQ F RY L+ GQGNFG+IDGDSAAA RYTEAR+ ++ EL+LQ +DE Sbjct: 83 GDSAIYDTMVRLAQNFSMRYTLVDGQGNFGSIDGDSAAAMRYTEARLQELGELMLQDIDE 142 Query: 150 DAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALID- 208 D V++ ++E EP+V PS+ PNLL NG++GIAVGMAT++P HN+ E+ +A LI+ Sbjct: 143 DTVEWGPNFDESLKEPMVLPSQVPNLLVNGSTGIAVGMATNMPPHNLGEVVDAICYLIEA 202 Query: 209 NPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCI 268 + +L+ + GPDFPTGG+I+ ++ I+++YR GRG V+ VEE RG + Sbjct: 203 GDQADFGELMARMPGPDFPTGGVIL-GKDGIIDAYRTGRGRLVVQGLVHVEEGKRGKSNV 261 Query: 269 VVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMES 328 V+TEIPY V K+ +IE IA + K I + DIRDES V+ +R +DPDL++ Sbjct: 262 VITEIPYMVNKTTMIETIASCVQNKTIDGVTDIRDESDRKGLRVVLEVSRDVDPDLVIRQ 321 Query: 329 IFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVE 388 ++ S ++ F + L GR P + L +L +L HRR V+ RR+ FR++ + R Sbjct: 322 LYRRSQLQNTFGVINLALVDGR-PVELSLTDMLNVFLGHRRTVVRRRTEFRLKKAEARAH 380 Query: 389 ILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEY 445 IL+GL+ A ID +IA+IR D K +V+ +E Q AIL+++L+ L LE Sbjct: 381 ILEGLVKALDVIDRVIALIRGSDNAALAKERLVAELDFSEIQAQAILDMKLQRLTGLERD 440 Query: 446 QIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRA 505 ++ E LLA+ ++ S+L+S K I E+ +K + RRT V R Sbjct: 441 KLNDEFAGLLADIQRYRSILDSEKVLDGVIVEELVALKGKYGDD-----RRTKI--VDRV 493 Query: 506 DKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA--------LHFKEGDSLKIALHA 557 + + +I +E I V++S G++R + L A +E D + + + Sbjct: 494 GQDCSDEDLIPREDIVVMLSRDGYLRRVPLEDYSLQAKGGKGRRGARLREEDEVSLMGVS 553 Query: 558 HTTDRILLLSTDGKAYTLPAGNLLSGR-GHGEAIQLLIDLNHNQDIVTAFVY--DSTCKL 614 T D I L +T G+ + + + R G G+ I I L +++ +V+ + L Sbjct: 554 TTHDDIFLFTTKGRVFAIKGYIISESRTGKGKLIGKYISLENDERVVSMKTRRGQESGFL 613 Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIF 673 ++ +G A + SE+ TR G+ + + +++ ++ +G D + +V + L Sbjct: 614 FFLTRRGIAKRLPSSELDNLTRAGRRVVTLDEGDEIAQILPTSGMDDLLLVSAMGQALRV 673 Query: 674 SIDQIPEMSR-GKGVRLQSYKDG 695 S D+ M R +GV+ KDG Sbjct: 674 SEDEFRPMGRSARGVKAMRLKDG 696 >gi|304372915|ref|YP_003856124.1| DNA gyrase subunit A [Mycoplasma hyorhinis HUB-1] gi|304309106|gb|ADM21586.1| DNA gyrase subunit A [Mycoplasma hyorhinis HUB-1] Length = 877 Score = 404 bits (1038), Expect = e-110, Method: Compositional matrix adjust. Identities = 265/784 (33%), Positives = 428/784 (54%), Gaps = 87/784 (11%) Query: 9 SNTLVEENVKAVSLRFALEE---RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65 S+ L+E + ++ EE +L YA+S I RA+PD+RDG KPVHRRI+H M+E+G Sbjct: 62 SSQLIESEADNIVPKYISEEVRTSFLEYAMSVIISRALPDVRDGLKPVHRRILHCMNELG 121 Query: 66 LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125 + A+KKSARIVG+V+GK HPHGD SVYDS+VR++Q F RYPLI G GNFG+IDGD Sbjct: 122 ITHSVAYKKSARIVGDVLGKYHPHGDASVYDSMVRMSQDFALRYPLIDGHGNFGSIDGDE 181 Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185 AAA RYTEARM+++A L+++ + ++ VDF Y+ + EP V P++FPNLL +G SGIAV Sbjct: 182 AAAMRYTEARMSKIASLMVEDIKKNTVDFVPNYDGSEQEPQVLPARFPNLLVSGVSGIAV 241 Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245 GMAT IP HN++E+ E + L NP+IS+++L +++ PDFPTG I+ + I ++Y Sbjct: 242 GMATKIPPHNLKEVIETFILLAQNPDISVQELAKHLPAPDFPTGATILGT-SGIRQAYET 300 Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305 GRG F +R++ +E G I+V EIPY+V+K ++IEK+ +L+ K+I L+D+RDE+ Sbjct: 301 GRGAFVLRSKAKIETFSSGKSKIIVYEIPYEVKKPQIIEKVVQLVRDKKIQGLKDVRDET 360 Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365 V+F + P++++ ++ +D++ + +NM L G +P+V+ L IL ++L Sbjct: 361 NRKGIRVVFDVKKGFSPEIILNQLYKETDLQITYNINMLALVNG-IPKVLNLKDILYQYL 419 Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFS 422 H+ EV+ R F ++ R IL G+ IA NIDE+I IIR ++ + + + RF Sbjct: 420 LHQEEVVTRGLQFDLKKAKERHNILLGIKIAVENIDEVIKIIRASKSDAEAQTTLGQRFD 479 Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482 L E Q AI+++RL L L ++ +E+ L E E+I S++NS + I +++ Sbjct: 480 LNEAQTKAIVDMRLGRLTSLAIEKLIAEIKELEEEIERITSIINSHDKLIELIVNNHKKI 539 Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL-- 540 E ++ RRT S + + +I+++ + + ++ +I+ + + Sbjct: 540 IESYADD-----RRTEIVHGSIG--QIVDEDLIKEQKVVLTLTKNNYIKRINLDEYRMQN 592 Query: 541 -------SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQ 591 +A +K+ D+LK L A T +L+L++ + + L + LS + G Sbjct: 593 RGGTGSSTATTYKD-DNLKNILVASTHSDLLILTSKARIFRLRTHQIPDLSKQAKGVPFI 651 Query: 592 LLIDLNHNQDIVTAFVY-----DSTCKLLVVSSKG------------------------- 621 LI + ++DI++ V D L+ VS G Sbjct: 652 NLIPIEKDEDIISLLVTQENYEDDNLYLVTVSKLGIIKKTSLSLYKRISKNGLIALNLKE 711 Query: 622 -----NAFI-VEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLL---- 671 AFI EESEII G++ ++ +++ L K G +GEN ++ Sbjct: 712 NDELLTAFITTEESEIIIGASNGRS-VRFDNQDFRSLSRKSMGVKGITLGENEVVVGASS 770 Query: 672 ------IF-----------SIDQIPEMSR-GKGV-RLQSYKDGGISDVICFKICEGLTWI 712 +F ID+ + +R GKGV L++ K G ++ + C K E + + Sbjct: 771 TDQGSTVFVLGQEGYGKKTHIDEYRKTARGGKGVITLKTEKAGNLAFISCVKGDEEILIL 830 Query: 713 DSAG 716 G Sbjct: 831 TKQG 834 >gi|313674616|ref|YP_004052612.1| DNA gyrase subunit a [Marivirga tractuosa DSM 4126] gi|312941314|gb|ADR20504.1| DNA gyrase subunit A [Marivirga tractuosa DSM 4126] Length = 839 Score = 404 bits (1038), Expect = e-110, Method: Compositional matrix adjust. Identities = 257/773 (33%), Positives = 431/773 (55%), Gaps = 54/773 (6%) Query: 15 ENVKAVSLRFALEER--YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72 EN K + + E R Y+ Y++S I RA+PD+RDG KPVHRRI+ M E+GL + Sbjct: 5 ENEKIIPINIEDEMRGAYIDYSMSVIVSRALPDVRDGLKPVHRRILFGMQELGLAHNRPY 64 Query: 73 KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132 KKSARIVGEV+GK HPHGD +VYD++VR+AQP+ RY ++ GQGNFG+IDGDS AA RYT Sbjct: 65 KKSARIVGEVLGKYHPHGDSAVYDTMVRMAQPWSLRYQMVDGQGNFGSIDGDSPAAMRYT 124 Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192 EAR+ ++AE +L ++++ VDF+ +++ EP V P+K PNLL NG SGIAVGMAT++ Sbjct: 125 EARLKRIAEEMLTDINKNTVDFQFNFDDSLKEPTVLPAKVPNLLLNGASGIAVGMATNMA 184 Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252 HN+ E+ A IDN +I++ +L+E+I PDFPTG I + + ++ GRG + Sbjct: 185 PHNLTEVVNGINAYIDNNDITVAELMEHISAPDFPTGAAIY-GYQGVKAAFETGRGRIVM 243 Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312 RA+ +E + G ++VTEIPY V K+ +IEK A L+ K+I + DIRDES + + Sbjct: 244 RAKAEIEVLKSGRERVIVTEIPYLVNKANMIEKTAALVNEKKIEGISDIRDESDRNGLRI 303 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 ++ + P++++ +++ + ++T F +N L GR P+ + L ++K ++ HR +V+ Sbjct: 304 VYEIRKDAIPNVVLNNLYKYTQLQTSFSVNNVALVKGR-PETLNLKDMIKHYVEHRHDVI 362 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVD 429 RR+ + ++ +R IL+G LIA N+DE+I +IR P+ ++ +F L+E Q Sbjct: 363 VRRTKYELEEAQKRAHILEGYLIALDNLDEVIKLIRESRDPEIARNGLMDKFKLSEIQAK 422 Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489 AIL++RL+ L LE +I E + + E ++S+L + N I E++E+++ + Sbjct: 423 AILDMRLQRLTGLEREKIIQEYEEIKKLIEYLESVLADEGLRMNIIKDEMQEIQDRYGDE 482 Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI-RSLKSH-------SVDLS 541 RRT E+ + + + MI E + + +S++G+I R+L + V Sbjct: 483 -----RRT---EIIHSAEEFTDEDMIPNEDVVITLSHQGYIKRTLLNEYKTQGRGGVGSK 534 Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDL 596 K+ D ++ A T + +L+ + G K Y LP G+ S G AIQ LI++ Sbjct: 535 GAGSKDDDFTELLFVAKTHNYLLIFTELGKVYWIKVYRLPEGSKTS---KGRAIQNLINI 591 Query: 597 NHNQDIVTAFV---------YDSTCKLLVVSSKGNAFIVEESEIIANTR---KGKTFLKV 644 ++D V A + Y + L++ + KG ++++ + A +R G + + Sbjct: 592 -ESEDSVRAVINVENLDDADYINNNFLVMCTEKGT---IKKTTLEAYSRPRANGINAISI 647 Query: 645 SSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702 + +++ V GD ++ + + + + F + M R GVR + KDG D++ Sbjct: 648 NEGDRLLNVKLTNGDNNIIIAARSGRAIRFHESNVRPMGRTAAGVRGITLKDG--KDIVV 705 Query: 703 FKIC---EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752 + E + + + Y + + + KRGG G ++G+ ++ Sbjct: 706 EMVAITRENANLLVVSEKGYGKRSDIEDYRITKRGGKGVKTLNVTEKTGELVA 758 >gi|226225890|ref|YP_002759996.1| DNA gyrase subunit A [Gemmatimonas aurantiaca T-27] gi|226089081|dbj|BAH37526.1| DNA gyrase subunit A [Gemmatimonas aurantiaca T-27] Length = 837 Score = 404 bits (1038), Expect = e-110, Method: Compositional matrix adjust. Identities = 261/693 (37%), Positives = 406/693 (58%), Gaps = 38/693 (5%) Query: 26 LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85 ++E ++ Y++S I RA+PD+RDG KPVHRR+++AM+E+GL G A+KKSA +VG+V+GK Sbjct: 19 VKESFINYSMSVIVSRALPDVRDGLKPVHRRVLYAMNELGLLPGRAYKKSATVVGDVLGK 78 Query: 86 LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145 HPHGD SVYD+LVR+ Q F RYPL+ GQGNFG++DGD+AAAYRYTEAR+T++A +L Sbjct: 79 YHPHGDSSVYDALVRMVQTFSLRYPLVDGQGNFGSMDGDNAAAYRYTEARLTRMAVEMLT 138 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 +D++ VDF +++ EP V P+ FPNLL NG++GIAVGMAT+IP HN++E+ A +A Sbjct: 139 DIDKNTVDFAPNFDDRLEEPRVLPAGFPNLLVNGSTGIAVGMATNIPPHNLREVISAVIA 198 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEV-GRG 264 LIDNPE+ L + + GPDFPTGG I R I + GRG +RAR +EE G Sbjct: 199 LIDNPELDGPALRKLVKGPDFPTGGYIY-GRAGIADYQDTGRGRIIMRARAVIEEKESSG 257 Query: 265 SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKNRSLDPD 323 IVVTE+PYQV K++L+ IAEL+ +++ + +RDES +D VR+V+ K ++ P Sbjct: 258 KSQIVVTEVPYQVNKAKLVADIAELVRDQKLTGISALRDESDKDGVRVVIELKRDAI-PR 316 Query: 324 LLMESIFMLSDMETRFPLNMNVL-----SMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378 +++ ++ + M++ F + M L + VP+V+ L L+ ++AHR EV+ RR+ F Sbjct: 317 VVLNQLYKHTAMQSTFGVIMLALVPDPHTRQLVPKVLTLRQCLEHYIAHRHEVIVRRTQF 376 Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDKPKPV--MVSRFSLTENQVDAILNLR 435 + R IL+GL IA NIDE+IA+IR D P + SRF L+E Q +AILN+R Sbjct: 377 DLDKALEREHILEGLKIAVDNIDEVIALIRAASDTPTASAQLQSRFGLSERQAEAILNMR 436 Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495 L L LE +++ EL + A ++ +L S ++ + + E+ +V E + R Sbjct: 437 LAKLTGLERDKLEEELVEVRAFILEMRGILESRDRRMSILKGELIQVAETYGDE-----R 491 Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR----SLKSHS----VDLSALHFKE 547 RT VS + +++ +I +E + V I++ G+I+ SL + ++ KE Sbjct: 492 RTEI--VSDEGEFSIED-LIAEEEMVVTITHGGYIKRTPLSLYNRQGRGGRGKASADLKE 548 Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL-LSGRG-HGEAIQLLIDLNHN---QDI 602 D ++ A T +L+ + DG+ + L L +GR G+ I LI++ + + I Sbjct: 549 HDFIERFYVASTHTYMLIFTDDGRCFWLKVHELPQAGRNTRGKPIVNLINVTPDTRIRAI 608 Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVA 662 V + T LL + G S+ G +K+ ++++ V +G++ Sbjct: 609 VVTKEFSDTEFLLFCTRNGTVKKTALSQYSNPRANGIKAIKIEQDDELMDVQVTSGNNDV 668 Query: 663 VVGENRKLLI-FSIDQIPEMSRG----KGVRLQ 690 V+ L + F + EM R KG+ L+ Sbjct: 669 VLATRHGLSVRFHESDVREMGRDTTGVKGIELR 701 >gi|330889346|gb|EGH22007.1| DNA gyrase subunit A [Pseudomonas syringae pv. mori str. 301020] Length = 928 Score = 404 bits (1038), Expect = e-110, Method: Compositional matrix adjust. Identities = 236/603 (39%), Positives = 358/603 (59%), Gaps = 57/603 (9%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 V++ L++ YL YA+S I RA+PD RDG KPVHRR++ AMSE+G D+ +KKSAR+V Sbjct: 11 VNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDWNKPYKKSARVV 70 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG++DGD+AAA RYTE RMT++ Sbjct: 71 GDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRYTEVRMTKL 130 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A +L + ++ VD+ Y+ + P V P++ PNLL NG+SGIAVGMAT+IP HN+ E+ Sbjct: 131 AHELLADLHKETVDWVPNYDGTEMIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHNLGEV 190 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 + LALIDNPE++I++L++YI GPDFPT II R I+E+YR GRG +RAR VE Sbjct: 191 IDGCLALIDNPELTIDELMQYIPGPDFPTAAII-NGRAGIIEAYRTGRGRIYMRARSIVE 249 Query: 260 EVGR--GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317 ++ + G IV+TE+PYQ+ K+RLIEKIAEL+ K++ + ++RDES +D V+ Sbjct: 250 DIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKLEGITELRDESDKDGMRVVIELR 309 Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377 R P++++ +++ + +++ F +N+ L GR P+++ L +L+ ++ HRREV+ RR+ Sbjct: 310 RGEVPEVVLNNLYAQTQLQSVFGINIVALIDGR-PRILNLKDLLEAFVRHRREVVTRRTV 368 Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV----------------MVSR- 420 F ++ R IL+G +A NID +IA+I+ P MV R Sbjct: 369 FELRKARERGHILEGQAVALSNIDPVIALIKASPTPAEAKEALIKTPWESSAVVEMVERA 428 Query: 421 --------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEK 460 + L+ Q AIL LRL L LE ++ E +L + + Sbjct: 429 GADSCRPENLDPQYGLREGKYFLSPEQAQAILELRLHRLTGLEHEKLLGEYQEILNQIGE 488 Query: 461 IDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI 520 + +LNS + I E+ ++ + + RRT + +R D TL + E+E + Sbjct: 489 LIRILNSATRLMEVIREELEVIRSEYGDA-----RRTEILD-ARLD-LTLGDLITEEERV 541 Query: 521 TVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKA 572 V IS+ G+ ++ + SA K+ D + L A++ +L+ S+ GK Sbjct: 542 -VTISHGGYAKTQPLAVYQAQRRGGKGKSATGIKDEDYIAHLLVANSHTTLLMFSSKGKV 600 Query: 573 YTL 575 Y L Sbjct: 601 YWL 603 >gi|94499388|ref|ZP_01305925.1| DNA gyrase subunit A [Oceanobacter sp. RED65] gi|94428142|gb|EAT13115.1| DNA gyrase subunit A [Oceanobacter sp. RED65] Length = 868 Score = 404 bits (1038), Expect = e-110, Method: Compositional matrix adjust. Identities = 275/792 (34%), Positives = 432/792 (54%), Gaps = 74/792 (9%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 V++ L++ Y+ YA+S I RA+PD+RDG KPVHRR++HAM+ + D+ +KKSAR+V Sbjct: 11 VNIEDELKQSYMDYAMSVIVGRALPDVRDGLKPVHRRVLHAMNILNNDWNKPYKKSARVV 70 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG+IDGDSAAA RYTE RM ++ Sbjct: 71 GDVIGKYHPHGDSAVYDTIVRMAQPFAMRYTLVDGQGNFGSIDGDSAAAMRYTEVRMAKI 130 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A +L +D++ V+F D Y+ + P V P++ P+LL NG+SGIAVGMAT+IP HN+ E+ Sbjct: 131 AHEMLADIDKETVNFVDNYDGTEQIPEVLPTRIPSLLVNGSSGIAVGMATNIPPHNLTEV 190 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 LALI+NPEI ++ L++YI GPDFPT +I R+ IV++YR GRG ++RAR E Sbjct: 191 ITGCLALIENPEIDVDGLMQYITGPDFPTAALI-NGRDGIVDAYRTGRGRIQMRARHHFE 249 Query: 260 -EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318 + G I+ TEIPYQV K+RLIEKIAEL+ K+I + ++RDES +D ++ R Sbjct: 250 MDDKNGKESIIFTEIPYQVNKARLIEKIAELVKDKKIEGITELRDESDKDGMRIVVELRR 309 Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378 P++++ ++F + ++T F +N L G+ P+++ L +L+ ++ HRREV+ RR+ + Sbjct: 310 GEVPEVVLNNLFAQTQLQTVFGINTVALVDGQ-PKILNLKDMLEAFVRHRREVVTRRTIY 368 Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIR-------NEDK-------PKPVMV------ 418 ++ R IL+GL +A NID +IA I+ +DK P VM Sbjct: 369 DLRKARERGHILEGLAVALANIDPVIATIKASPTAAEAKDKLISTAWQPGDVMEMLERAG 428 Query: 419 -----------------SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKI 461 + L+ Q AIL++RL+ L LE ++ E + E + Sbjct: 429 PDACRPDDLDPQFGFRDGNYYLSPAQAQAILDMRLQKLTGLEHDKLIDEYKVKVDEIAEY 488 Query: 462 DSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPIT 521 +L S ++ I E+ +K+ + GR E+ + + +I +E + Sbjct: 489 LQILASHERLMEVIREELESIKDEYGD----GR----LTEIVETRRHLTMEDLIAEEDMV 540 Query: 522 VVISNRGW--IRSLKSHSVDL------SALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573 V +S+ G+ I+ + + SA K+ D ++ L A+T D IL S GK Y Sbjct: 541 VTLSHGGYAKIQPVTDYQAQRRGGRGKSASAIKDEDFIEHLLVANTHDTILCFSNAGKVY 600 Query: 574 TLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEE 628 L ++ S + G I L+ L ++ I T Y + + +SKG V++ Sbjct: 601 WLKVYDIPVASRQSRGRPIVNLLPLEQDEWITTILPVREYTEGHYIFMATSKGT---VKK 657 Query: 629 SEIIANTR-KGKTFLKVSSEEKMKLVVKVTGD---HVAVVGENRKLLIFSIDQIPEMSR- 683 +++ A +R + + + EE L+ D V ++ + K + F+ + M R Sbjct: 658 TDLTAFSRPRSSGLIALELEEGDTLMGAEITDGNQDVLLMSDVGKAVRFAESNVRAMGRT 717 Query: 684 GKGVRLQSYKDGGISDVICFKIC-EGLTWIDSAGRSYN-RSENDLLGWLGKRGGVGSLVP 741 +GVR +D V+ I EG T + ++ Y R++ D G RG G + Sbjct: 718 ARGVRGIKMQDD--QKVVSLMIPKEGATVLTASEHGYGKRTDVDEFPTKG-RGTQGVIGM 774 Query: 742 KGFPRSGKFLSS 753 R+GK + + Sbjct: 775 VTNDRNGKLVGA 786 >gi|66046876|ref|YP_236717.1| DNA gyrase subunit A [Pseudomonas syringae pv. syringae B728a] gi|63257583|gb|AAY38679.1| DNA gyrase, subunit A [Pseudomonas syringae pv. syringae B728a] gi|330897204|gb|EGH28623.1| DNA gyrase subunit A [Pseudomonas syringae pv. japonica str. M301072PT] Length = 925 Score = 404 bits (1038), Expect = e-110, Method: Compositional matrix adjust. Identities = 235/603 (38%), Positives = 358/603 (59%), Gaps = 57/603 (9%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 V++ L++ YL YA+S I RA+PD RDG KPVHRR++ AMSE+G D+ +KKSAR+V Sbjct: 11 VNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDWNKPYKKSARVV 70 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG++DGD+AAA RYTE RMT++ Sbjct: 71 GDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRYTEVRMTKL 130 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A +L + ++ VD+ Y+ + P V P++ PNLL NG+SGIAVGMAT+IP HN+ E+ Sbjct: 131 AHELLADLHKETVDWVPNYDGTEMIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHNLGEV 190 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 + LALIDNPE+++++L++YI GPDFPT II R I+E+YR GRG +RAR VE Sbjct: 191 IDGCLALIDNPELTVDELMQYIPGPDFPTAAII-NGRAGIIEAYRTGRGRIYMRARSIVE 249 Query: 260 EVGR--GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317 ++ + G IV+TE+PYQ+ K+RLIEKIAEL+ K++ + ++RDES +D V+ Sbjct: 250 DIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKLEGITELRDESDKDGMRVVIELR 309 Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377 R P++++ +++ + +++ F +N+ L GR P+++ L +L+ ++ HRREV+ RR+ Sbjct: 310 RGEVPEVILNNLYAQTQLQSVFGINIVALIDGR-PRILNLKDLLEAFVRHRREVVTRRTV 368 Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV----------------MVSR- 420 F ++ R IL+G +A NID +IA+I+ P MV R Sbjct: 369 FELRKARERGHILEGQAVALSNIDPVIALIKASPTPAEAKEALIKTPWESSAVVEMVERA 428 Query: 421 --------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEK 460 + L+ Q AIL LRL L LE ++ E +L + + Sbjct: 429 GADSCRPENLDPQYGLREGKYFLSPEQAQAILELRLHRLTGLEHEKLLGEYQEILNQIGE 488 Query: 461 IDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI 520 + +LNS + I E+ ++ + + RRT + +R D TL + E+E + Sbjct: 489 LIRILNSATRLMEVIREELELIRSEYGDA-----RRTEILD-ARLD-LTLGDLITEEERV 541 Query: 521 TVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKA 572 V IS+ G+ ++ + SA K+ D + L A++ +L+ S+ GK Sbjct: 542 -VTISHGGYAKTQPLAVYQAQRRGGKGKSATGIKDEDYIAHLLVANSHTTLLMFSSKGKV 600 Query: 573 YTL 575 Y L Sbjct: 601 YWL 603 >gi|302187665|ref|ZP_07264338.1| DNA gyrase subunit A [Pseudomonas syringae pv. syringae 642] Length = 926 Score = 404 bits (1038), Expect = e-110, Method: Compositional matrix adjust. Identities = 235/603 (38%), Positives = 358/603 (59%), Gaps = 57/603 (9%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 V++ L++ YL YA+S I RA+PD RDG KPVHRR++ AMSE+G D+ +KKSAR+V Sbjct: 11 VNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDWNKPYKKSARVV 70 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG++DGD+AAA RYTE RMT++ Sbjct: 71 GDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRYTEVRMTKL 130 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A +L + ++ VD+ Y+ + P V P++ PNLL NG+SGIAVGMAT+IP HN+ E+ Sbjct: 131 AHELLADLHKETVDWVPNYDGTEMIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHNLGEV 190 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 + LALIDNPE+++++L++YI GPDFPT II R I+E+YR GRG +RAR VE Sbjct: 191 IDGCLALIDNPELTVDELMQYIPGPDFPTAAII-NGRAGIIEAYRTGRGRIYMRARSIVE 249 Query: 260 EVGR--GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317 ++ + G IV+TE+PYQ+ K+RLIEKIAEL+ K++ + ++RDES +D V+ Sbjct: 250 DIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKLEGITELRDESDKDGMRVVIELR 309 Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377 R P++++ +++ + +++ F +N+ L GR P+++ L +L+ ++ HRREV+ RR+ Sbjct: 310 RGEVPEVILNNLYAQTQLQSVFGINIVALIDGR-PRILNLKDLLEAFVRHRREVVTRRTV 368 Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV----------------MVSR- 420 F ++ R IL+G +A NID +IA+I+ P MV R Sbjct: 369 FELRKARERGHILEGQAVALSNIDPVIALIKASPTPAEAKEALIKTPWESSAVVEMVERA 428 Query: 421 --------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEK 460 + L+ Q AIL LRL L LE ++ E +L + + Sbjct: 429 GADSCRPENLDPQYGLREGKYFLSPEQAQAILELRLHRLTGLEHEKLLGEYQEILNQIGE 488 Query: 461 IDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI 520 + +LNS + I E+ ++ + + RRT + +R D TL + E+E + Sbjct: 489 LIRILNSATRLMEVIREELELIRSEYGDA-----RRTEILD-ARLD-LTLGDLITEEERV 541 Query: 521 TVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKA 572 V IS+ G+ ++ + SA K+ D + L A++ +L+ S+ GK Sbjct: 542 -VTISHGGYAKTQPLAVYQAQRRGGKGKSATGIKDEDYIAHLLVANSHTTLLMFSSKGKV 600 Query: 573 YTL 575 Y L Sbjct: 601 YWL 603 >gi|289623731|ref|ZP_06456685.1| DNA gyrase subunit A [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289648173|ref|ZP_06479516.1| DNA gyrase subunit A [Pseudomonas syringae pv. aesculi str. 2250] gi|298488015|ref|ZP_07006052.1| DNA gyrase subunit A [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298157294|gb|EFH98377.1| DNA gyrase subunit A [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|330866098|gb|EGH00807.1| DNA gyrase subunit A [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 928 Score = 404 bits (1037), Expect = e-110, Method: Compositional matrix adjust. Identities = 235/603 (38%), Positives = 358/603 (59%), Gaps = 57/603 (9%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 V++ L++ YL YA+S I RA+PD RDG KPVHRR++ AMSE+G D+ +KKSAR+V Sbjct: 11 VNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDWNKPYKKSARVV 70 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG++DGD+AAA RYTE RMT++ Sbjct: 71 GDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRYTEVRMTKL 130 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A +L + ++ VD+ Y+ + P V P++ PNLL NG+SGIAVGMAT+IP HN+ E+ Sbjct: 131 AHELLADLHKETVDWVPNYDGTEMIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHNLGEV 190 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 + LALIDNPE+++++L++YI GPDFPT II R I+E+YR GRG +RAR VE Sbjct: 191 IDGCLALIDNPELTVDELMQYIPGPDFPTAAII-NGRAGIIEAYRTGRGRIYMRARSIVE 249 Query: 260 EVGR--GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317 ++ + G IV+TE+PYQ+ K+RLIEKIAEL+ K++ + ++RDES +D V+ Sbjct: 250 DIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKLEGITELRDESDKDGMRVVIELR 309 Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377 R P++++ +++ + +++ F +N+ L GR P+++ L +L+ ++ HRREV+ RR+ Sbjct: 310 RGEVPEVVLNNLYAQTQLQSVFGINIVALIDGR-PRILNLKDLLEAFVRHRREVVTRRTV 368 Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV----------------MVSR- 420 F ++ R IL+G +A NID +IA+I+ P MV R Sbjct: 369 FELRKARERGHILEGQAVALSNIDPVIALIKASPTPAEAKEALIKTPWESSAVVEMVERA 428 Query: 421 --------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEK 460 + L+ Q AIL LRL L LE ++ E +L + + Sbjct: 429 GADSCRPENLDPQYGLREGKYFLSPEQAQAILELRLHRLTGLEHEKLLGEYQEILNQIGE 488 Query: 461 IDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI 520 + +LNS + I E+ ++ + + RRT + +R D TL + E+E + Sbjct: 489 LIRILNSATRLMEVIREELEVIRSEYGDA-----RRTEILD-ARLD-LTLGDLITEEERV 541 Query: 521 TVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKA 572 V IS+ G+ ++ + SA K+ D + L A++ +L+ S+ GK Sbjct: 542 -VTISHGGYAKTQPLAVYQAQRRGGKGKSATGIKDEDYIAHLLVANSHTTLLMFSSKGKV 600 Query: 573 YTL 575 Y L Sbjct: 601 YWL 603 >gi|330972345|gb|EGH72411.1| DNA gyrase subunit A [Pseudomonas syringae pv. aceris str. M302273PT] Length = 925 Score = 404 bits (1037), Expect = e-110, Method: Compositional matrix adjust. Identities = 235/603 (38%), Positives = 358/603 (59%), Gaps = 57/603 (9%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 V++ L++ YL YA+S I RA+PD RDG KPVHRR++ AMSE+G D+ +KKSAR+V Sbjct: 11 VNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDWNKPYKKSARVV 70 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG++DGD+AAA RYTE RMT++ Sbjct: 71 GDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRYTEVRMTKL 130 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A +L + ++ VD+ Y+ + P V P++ PNLL NG+SGIAVGMAT+IP HN+ E+ Sbjct: 131 AHELLADLHKETVDWVPNYDGTEMIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHNLGEV 190 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 + LALIDNPE+++++L++YI GPDFPT II R I+E+YR GRG +RAR VE Sbjct: 191 IDGCLALIDNPELTVDELMQYIPGPDFPTAAII-NGRAGIIEAYRTGRGRIYMRARSIVE 249 Query: 260 EVGR--GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317 ++ + G IV+TE+PYQ+ K+RLIEKIAEL+ K++ + ++RDES +D V+ Sbjct: 250 DIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKLEGITELRDESDKDGMRVVIELR 309 Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377 R P++++ +++ + +++ F +N+ L GR P+++ L +L+ ++ HRREV+ RR+ Sbjct: 310 RGEVPEVILNNLYAQTQLQSVFGINIVALIDGR-PRILNLKDLLEAFVRHRREVVTRRTV 368 Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV----------------MVSR- 420 F ++ R IL+G +A NID +IA+I+ P MV R Sbjct: 369 FELRKARERGHILEGQAVALSNIDPVIALIKASPTPAEAKEALIKTPWESSAVVEMVERA 428 Query: 421 --------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEK 460 + L+ Q AIL LRL L LE ++ E +L + + Sbjct: 429 GADSCRPENLDPQYGLREGKYFLSPEQAQAILELRLHRLTGLEHEKLLGEYQEILNQIGE 488 Query: 461 IDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI 520 + +LNS + I E+ ++ + + RRT + +R D TL + E+E + Sbjct: 489 LIRILNSATRLMEVIREELELIRSEYGDA-----RRTEILD-ARLD-LTLGDLITEEERV 541 Query: 521 TVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKA 572 V IS+ G+ ++ + SA K+ D + L A++ +L+ S+ GK Sbjct: 542 -VTISHGGYAKTQPLAVYQAQRRGGKGKSATGIKDEDYIAHLLVANSHTTLLMFSSKGKV 600 Query: 573 YTL 575 Y L Sbjct: 601 YWL 603 >gi|301063847|ref|ZP_07204331.1| DNA gyrase, A subunit [delta proteobacterium NaphS2] gi|300442050|gb|EFK06331.1| DNA gyrase, A subunit [delta proteobacterium NaphS2] Length = 807 Score = 404 bits (1037), Expect = e-110, Method: Compositional matrix adjust. Identities = 255/750 (34%), Positives = 408/750 (54%), Gaps = 35/750 (4%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 V++ +++ YL Y++S I RA+PD+RDG KPVHRR++ AM+++ F FKKSAR+V Sbjct: 10 VNIEDEMKKSYLEYSMSVIVGRALPDIRDGLKPVHRRVLFAMNDLKNFFNRPFKKSARVV 69 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGD +VYD++VR+AQ F RY L+ GQGNFG++DGD AA RYTE RMT+ Sbjct: 70 GDVIGKYHPHGDTAVYDTIVRMAQDFSLRYCLVDGQGNFGSVDGDPPAAMRYTEVRMTRT 129 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 AE L ++++ VDF TY+ EP+V P+K PNLL NG+SGIAVGMAT+IP HN+ EI Sbjct: 130 AEDFLADLEKETVDFVPTYDGTLLEPLVLPTKVPNLLINGSSGIAVGMATNIPPHNLMEI 189 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 C ++DNP IS+ +L+ I GPDFPT G I+ ++ I+++Y GRG ++R+R VE Sbjct: 190 CRGIEKVVDNPNISLGELMGVIPGPDFPTAGFIL-GKQGIIDAYSTGRGIIKIRSRAFVE 248 Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319 + I+V+EIPYQV K +L+EKIA + K+I + +IRDES D ++ R Sbjct: 249 KFAHNKERIIVSEIPYQVNKGKLLEKIAAQVREKKIEGISEIRDESDRDGMRIVIEIKRD 308 Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379 +++ ++ + ME F + + + GR P+++ L G++ ++ HRRE++ RR+ F Sbjct: 309 AYALVILNQLYKFTQMEVSFGIILLAIVNGR-PEILTLKGMIDHFIKHRREIIVRRTIFD 367 Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVDAILNLRL 436 ++ + R IL+GL A +DE+I +IR+ K +++ F +E Q AIL++RL Sbjct: 368 LKKAEARAHILEGLKKALDFLDEVIELIRSSSDAKEAKSRLMAEFQFSEIQAQAILDMRL 427 Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496 + L LE +I +E + LL + ++L + + I E+ E++ + RR Sbjct: 428 QRLTGLEREKIHAEYEALLKDIAHYKAILATPSMVLDIIKEELLEIRNAYGDE----RRS 483 Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEG 548 + D + +I +E + V +S++G+I R+ + L+ KE Sbjct: 484 EIIDDAEEID----MEDLIAEEDMVVTVSHQGYIKRNPISLYRAQRRGGKGLTGAKPKEE 539 Query: 549 DSLKIALHAHTTDRILLLSTDGKAY-----TLPAGNLLSGRGHGEAIQLLIDLNHNQDIV 603 D ++ A + D L + G+ Y +P G +S G+AI L+DL + + Sbjct: 540 DFVEHLFVASSHDYFLFFTNKGRVYWKKVHEIPEGGRMS---RGKAIVNLLDLKKGERLA 596 Query: 604 TAF-VYDSTCKLLVVSSKGNAFIVEESEIIANTRK---GKTFLKVSSEEKMKLVVKVTGD 659 T V D VV + F V+++E+ A + G LK+ +++ V +GD Sbjct: 597 TILPVRDYEEGKYVVMATKMGF-VKKTELKAYSHPRSVGTIGLKIRENDELIAVRVSSGD 655 Query: 660 H-VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718 + + + K + F ++ M R + + G V + EG T + Sbjct: 656 QDIFLTTKEGKSIRFKESELRSMGRVAAGNIGIKMETGNEVVGMETLGEGATILTVTENG 715 Query: 719 YNRSENDLLGWLGKRGGVGSLVPKGFPRSG 748 + + N R G G + K R+G Sbjct: 716 FGKRTNREEYPTQARAGKGVITIKTSERNG 745 >gi|28564560|dbj|BAC57594.1| DNA gyrase A [Campylobacter jejuni] Length = 844 Score = 404 bits (1037), Expect = e-110, Method: Compositional matrix adjust. Identities = 236/607 (38%), Positives = 375/607 (61%), Gaps = 32/607 (5%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 + +++ V + +++ YL Y++S I RA+PD RDG KPVHRRI++AM F Sbjct: 8 DSDIELVDIENSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFV 67 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSARIVG VIG+ HPHGD +VYD+LVR+AQ F RYP I+GQGNFG+IDGDSAAA RYTE Sbjct: 68 KSARIVGAVIGRYHPHGDTAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTE 127 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 A+M++++ +L+ +D+D VDF Y+ +SE V PS+ PNLL NG+SGIAVGMAT+IP Sbjct: 128 AKMSKLSHELLKDIDKDTVDFVPNYDGSESESDVLPSRVPNLLLNGSSGIAVGMATNIPP 187 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 H++ E+ + L L+DN + S+E+++++I GPDFPTGGII ++ I+E+YR GRG +VR Sbjct: 188 HSLNELIDGLLYLLDNKDASLEEIMQFIKGPDFPTGGIIY-GKKGIIEAYRTGRGRVKVR 246 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIV 312 A+ +E+ IV+ E+PYQ K+RLI +IAEL+ K+I + ++RDES E +R+V Sbjct: 247 AKPHIEK-KTNKDVIVIDELPYQTNKARLIGQIAELVKEKQIEGISEVRDESNKEGIRVV 305 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 + K ++ ++++ ++F + ME+ F + M + + P++ L +L +L HR+ V+ Sbjct: 306 IELKREAM-SEIVLNNLFKSTTMESTFGVIMLAIH-NKEPKIFSLLELLNLFLTHRKTVI 363 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLTENQVD 429 RR+ F +Q R IL+GL IA NIDE+IA+I+N + + +V++F L+E Q + Sbjct: 364 IRRTIFELQKARARAHILEGLKIALDNIDEVIALIKNSSDNNTARDSLVAKFGLSELQAN 423 Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489 AIL+++L L LE +I++EL L+ E +++ +L S N I E++E++ F Sbjct: 424 AILDMKLGRLTGLEREKIENELAELMKEIARLEEILKSETLLENLIRDELKEIRSKF--- 480 Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS-------- 541 D+ R ++ + +I E + V I++RG+I+ + S + Sbjct: 481 -DVPR----ITQIEDDYDDIDIEDLIPNENMVVTITHRGYIKRVPSKQYEKQKRGGKGKL 535 Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDL 596 A+ + D ++ A+T D ++ ++ G K Y +P G S G+A+ LI+L Sbjct: 536 AVTTYDDDFIESFFTANTHDTLMFVTDRGQLYWLKVYKIPEG---SRTAKGKAVVNLINL 592 Query: 597 NHNQDIV 603 + I+ Sbjct: 593 QAEEKIM 599 >gi|260576780|ref|ZP_05844765.1| DNA gyrase, A subunit [Rhodobacter sp. SW2] gi|259021032|gb|EEW24343.1| DNA gyrase, A subunit [Rhodobacter sp. SW2] Length = 907 Score = 404 bits (1037), Expect = e-110, Method: Compositional matrix adjust. Identities = 256/718 (35%), Positives = 389/718 (54%), Gaps = 72/718 (10%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 VS+ ++ YL YA+S I RAIPDLRDG KPVHRR++ AM E G ++KSAR V Sbjct: 25 VSISAEMKTAYLDYAMSVIVSRAIPDLRDGLKPVHRRVLFAMHETGNTSDKPYRKSARPV 84 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+ +GK HPHGD S+YD+LVR+AQPF L+ GQGNFG++DGD AAA RYTE RM + Sbjct: 85 GDTMGKYHPHGDASIYDALVRMAQPFSMSLKLLDGQGNFGSMDGDGAAAMRYTEVRMDKP 144 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A +L +D+D VDF+D Y+ +D EP V P++FPN+L NG GIAVGMAT IP HN+ E+ Sbjct: 145 AAFLLADIDKDTVDFQDNYDGKDREPTVLPARFPNMLVNGAEGIAVGMATRIPPHNLGEV 204 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 + LALI NP++S E L+E I PDFPTG I+ R ++Y GRG VRA+ +E Sbjct: 205 IDGTLALIANPDLSTEALMEIIPAPDFPTGATIL-GRSGARKAYLEGRGSIIVRAKTRIE 263 Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE-DVRIVLFPKNR 318 E+ + + I++ EIPYQV K+R+IE IAE + K+I + ++DES VR+V+ K R Sbjct: 264 EIRKDRFAIIIDEIPYQVNKARMIEIIAEQVREKKIEGIAHVQDESDRIGVRVVIELK-R 322 Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378 D+++ ++ + M+ F NM L+ GR P+ + L L ++ R EV+ RR++F Sbjct: 323 DATADVVLNQLYRFTPMQISFACNMLALNGGR-PEQLALRDFLTHFITFREEVVARRTAF 381 Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP----KPVMVSR-------------- 420 ++ R IL GL +A N+DE++A IR+ P + +M R Sbjct: 382 ELRKARERSHILCGLAVAVANVDEVVATIRSSADPAEARERLMTRRWPAGEIIPFIKLID 441 Query: 421 -----------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGK 469 ++L+E Q AIL+LRL+ L + +I EL +L + +L S Sbjct: 442 DPTHKVNEDGTYNLSEIQARAILDLRLQRLTAMGVKEITDELLDLAGKIRDYLEILGSRD 501 Query: 470 QQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW 529 + I+ E+ E++ +F+ RRT + S + +IE+E + V I++ G+ Sbjct: 502 RIMAIISTELAEMRALFAVP-----RRTEIVDWS---GDMEDEDLIEREDMVVTITSGGY 553 Query: 530 I--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL- 580 I RS L+++ KE D + A+T ++L +TDG Y L L Sbjct: 554 IKRTPLAEFRSQNRGGKGLASMSTKEDDVVTTLFVANTHTQLLFFTTDGMVYKLKTWRLP 613 Query: 581 LSGR-GHGEAIQLLIDLNHNQDIVTAFVYD------STCKLLVVSSKGNAFIVEESEIIA 633 L+GR G+AI ++ + I D + +++ +S G+ + S+ Sbjct: 614 LAGRQAKGKAIVNILPIAQGVSIAALMPVDVPEEEWESLQIVFATSDGDVRQNDLSDFTN 673 Query: 634 NTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQS 691 R GK +K+ E + LV + A+ EN +++ + S G+ +R + Sbjct: 674 VMRNGKIAMKLP--EGVSLV------NAAIADENDDVMLVT-------SGGRAIRFPT 716 >gi|88705960|ref|ZP_01103668.1| DNA gyrase, subunit A [Congregibacter litoralis KT71] gi|88699674|gb|EAQ96785.1| DNA gyrase, subunit A [Congregibacter litoralis KT71] Length = 885 Score = 404 bits (1037), Expect = e-110, Method: Compositional matrix adjust. Identities = 239/605 (39%), Positives = 360/605 (59%), Gaps = 60/605 (9%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + V++ L++ YL YA+S I RA+PD+RDG KPVHRR++ AM+E+ D+ +KKSA Sbjct: 8 ISPVTIEDELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELNNDWNKPYKKSA 67 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG++DGDSAAA RYTE RM Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSMRYTLVDGQGNFGSVDGDSAAAMRYTEIRM 127 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 +++A ++L +D+D VD+ D Y+ + P V P++ PNLL NG++GIAVGMAT+IP HN+ Sbjct: 128 SKIAHMLLSDLDKDTVDYVDNYDGTERIPAVLPTRVPNLLVNGSAGIAVGMATNIPPHNL 187 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 +E+ A LALI + ISI+ L+ Y+ GPDFPTG II R IV++YR GRG VRAR Sbjct: 188 REVVNACLALIGDAHISIDDLMRYLPGPDFPTGAII-NGRAGIVQAYRTGRGRIYVRARA 246 Query: 257 CV---EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313 V E+ GR + I+V EIPYQ+ K+RLIE+IAEL+ K++ + ++RDES +D V+ Sbjct: 247 EVITDEKTGRDT--IIVHEIPYQLNKARLIERIAELVKEKKLEGISELRDESDKDGLRVV 304 Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373 + D+++ +++ + ++ F +NM L G+ P+V+ L IL+ +L HRREV+ Sbjct: 305 IELRKGEIGDVVLNNLYAQTSLQNVFGINMVALVDGQ-PRVLNLKEILEAFLRHRREVVT 363 Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV----------------M 417 RR+ F ++ R +L+GL IA NID++I +++ P M Sbjct: 364 RRTLFLLRKARERGHVLEGLAIALANIDKVIELVKASPSPAEARESLLAERWLPGEVTSM 423 Query: 418 VSR---------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLA 456 + R + L+ Q AIL+LRL L LE ++ E + LA Sbjct: 424 LERAGAEACRPDELEPFYGLHDGEYRLSPTQAQAILDLRLHRLTGLEHEKLLKEYQDKLA 483 Query: 457 EKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE 516 E I LL+ + + +A E++EI +T+ G R T E+ + + + +I Sbjct: 484 E---IADLLDILQDRERLLAVIREELEEI---ATEFGDERRT--EIRDSQEDLTAEDLIT 535 Query: 517 KEPITVVISNRGWIRS--LKSHSVDL------SALHFKEGDSLKIALHAHTTDRILLLST 568 E V +S+ G+ ++ L + V +AL K+ D ++ L A+T D +L + Sbjct: 536 PEDRVVTLSHGGYAKTQPLAEYQVQRRGGMGKAALSVKDEDFVEHLLIANTHDTLLCFTN 595 Query: 569 DGKAY 573 GK Y Sbjct: 596 LGKVY 600 >gi|222479424|ref|YP_002565661.1| DNA gyrase, A subunit [Halorubrum lacusprofundi ATCC 49239] gi|222452326|gb|ACM56591.1| DNA gyrase, A subunit [Halorubrum lacusprofundi ATCC 49239] Length = 827 Score = 404 bits (1037), Expect = e-110, Method: Compositional matrix adjust. Identities = 225/592 (38%), Positives = 358/592 (60%), Gaps = 31/592 (5%) Query: 26 LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85 +E+ Y+ YA+S I RA+PD+RDG KPVHRRI++AM E G+ +A +KS+ +VGE +G Sbjct: 27 MEQSYIDYAMSVIAGRALPDVRDGLKPVHRRILYAMHEAGVTSNSAHRKSSSVVGETMGD 86 Query: 86 LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145 HPHGD ++YD+L R+AQ F RYPL+ GQGNFG++DGD AA RYTEARM+ +AE +L Sbjct: 87 YHPHGDSAIYDTLARMAQDFSMRYPLVDGQGNFGSVDGDPPAAMRYTEARMSPIAEELLA 146 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 ++ D VDF Y++ EP V P+ FPNLL NG+SGIAVGM+T+IP HN+ E+ +A +A Sbjct: 147 DIERDTVDFTSNYDDRLEEPEVLPAAFPNLLVNGSSGIAVGMSTNIPPHNLGEVIDATVA 206 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV-EEVGRG 264 LI P+ ++E L+E++ GPDFPTG IV R ++ ++Y+ GRG RVRA + V EE GR Sbjct: 207 LIKEPDCTVEDLMEHVKGPDFPTGANIV-GRNAVHKAYKTGRGRVRVRAEFEVDEEEGR- 264 Query: 265 SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKNRSLDPD 323 IV++E+P+Q KSRL+E+IAE + I + D+RDES D +R+V+ K ++ Sbjct: 265 ---IVISELPFQQNKSRLVERIAEDVNDGSIEGIRDLRDESDRDGIRVVVELKRDAMAE- 320 Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383 ++++ + S +E F + +N+ + PQV+ L L+ ++ HRR+V+ RRS + Sbjct: 321 -VVKNQLLESHLERTFGV-INLALVDGSPQVLDLKQTLEYYVEHRRDVVRRRSEHELAER 378 Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAILNLRLRSLR 440 + R ILKG L A +D+++ I+N D K + + + +E Q + I+ ++L SL Sbjct: 379 EDRAHILKGRLKALEQVDDVVETIQNSDDRDAAKAALEADYEFSEAQAEHIVRMQLGSLT 438 Query: 441 KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500 +E +I+SE +++ A E+++++L + I E+RE+K+ + RRT+F Sbjct: 439 SMETQEIESEYEDVTARIERLETILGDPDELDQVIITELREIKDEYDDE-----RRTSFI 493 Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DLSALHFKEGDSLK 552 E + +I +E VV+S +I+ + + + KEGD + Sbjct: 494 EDV---GDVTHEDLIPEEECVVVMSEDDYIKRMSLDTFRAQNRGGKGIIGTDLKEGDRVS 550 Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDI 602 A++ D +L+ + G+ Y L + +S G++ LIDL+ ++I Sbjct: 551 SVFAANSHDYLLVFTNHGQIYELKTYEIPEMSRTARGKSAVNLIDLDDGEEI 602 >gi|312886823|ref|ZP_07746429.1| DNA gyrase subunit A [Mucilaginibacter paludis DSM 18603] gi|311300650|gb|EFQ77713.1| DNA gyrase subunit A [Mucilaginibacter paludis DSM 18603] Length = 883 Score = 404 bits (1037), Expect = e-110, Method: Compositional matrix adjust. Identities = 238/663 (35%), Positives = 386/663 (58%), Gaps = 43/663 (6%) Query: 4 DNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63 ++ N + ++ + +++ + Y+ Y++S I RA+PD+RDG KPVHRR+++ M Sbjct: 3 EDTENGDNGSQDRIIPINIEEEMRSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMLN 62 Query: 64 MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123 +GL+ +KKSARIVGEV+GK HPHGD SVY ++VR+AQ + RYPL+ GQGN+G+IDG Sbjct: 63 LGLNSNKPYKKSARIVGEVLGKYHPHGDSSVYGTMVRMAQEWSLRYPLVDGQGNYGSIDG 122 Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183 D+ AA RYTEAR+ ++AE +L +++D +D++ +++ + EP V P+KFPNLL NG SGI Sbjct: 123 DNPAAMRYTEARLLKIAEEMLADINKDTIDYQLNFDDTEQEPTVLPAKFPNLLVNGASGI 182 Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243 AVGMAT++ HN+ E+ A +A ID+ I I +L++++ GPDFPTGGII E E+ Sbjct: 183 AVGMATNMAPHNLTEVINATMAYIDDRNIEITELMKFVKGPDFPTGGIIY-GFEGAREAS 241 Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303 GRG +RAR +E I+VTEIPYQ+ KS +IE+ AEL+ K++ + +RD Sbjct: 242 ETGRGRIILRARAEIEVYNNDRERIIVTEIPYQINKSIMIERTAELVNEKKLEGISAMRD 301 Query: 304 ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363 ES + V++ R + +++ ++F + ++T F +N L GR P ++ L ++ Sbjct: 302 ESNREGIRVVYEIKRDANAAIVLNNLFKYTSLQTSFSVNNIALVHGR-PMLLNLKDLIHH 360 Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSR 420 ++ HR EV+ RR+ F + ++R IL+GLLIA ++DE+I +IR+ + P +++R Sbjct: 361 FVEHRHEVIVRRTKFELAEAEKRAHILEGLLIALDHLDEVIQLIRSSNTPDEARDGLMTR 420 Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480 F+L++ Q AIL++ LR L LE +IK+E + L+ + + S+L + I E+ Sbjct: 421 FNLSDIQARAILDMTLRRLTGLERDKIKAEYNELMKLIDYLKSILADEGLRMEIIKNELI 480 Query: 481 EVKEIFSKSTDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSLKSHSVD 539 E+KE + RRT S A +Q + IE E + + IS+ G+I+ Sbjct: 481 EIKEKYGDE-----RRTQIVHSS----AEMQTEDFIEDENVVITISHEGYIKRTPLTEYR 531 Query: 540 LSAL--------HFKEGDSLKIALHAHTTDRILLLSTDGKAYTL-----PAGNLLSGRGH 586 A + ++ D ++ L A + +L + G+ + L P G S Sbjct: 532 TQARGGKGSIGSNSRDADFIEHLLIASNHNYMLFFTESGQCFWLRVFEIPEGTRTS---K 588 Query: 587 GEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG---KTFLK 643 G AIQ +I++ ++I A++ ++ K + +E + II TRKG KT L+ Sbjct: 589 GRAIQNIINIPKEENI-KAYIKLTSLK--------DRDYLENNFIIMCTRKGVIKKTSLE 639 Query: 644 VSS 646 S Sbjct: 640 AYS 642 >gi|21228522|ref|NP_634444.1| DNA gyrase subunit A [Methanosarcina mazei Go1] gi|20907009|gb|AAM32116.1| DNA gyrase, subunit A [Methanosarcina mazei Go1] Length = 900 Score = 404 bits (1037), Expect = e-110, Method: Compositional matrix adjust. Identities = 255/712 (35%), Positives = 410/712 (57%), Gaps = 43/712 (6%) Query: 26 LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85 ++ Y+ YA+S I RA+PD RDG KPVHRRI+ +M+E G+ +KKSARIVG+V+GK Sbjct: 27 MKRSYINYAMSVIVGRALPDARDGLKPVHRRILFSMNESGITHDKPYKKSARIVGDVLGK 86 Query: 86 LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145 HPHGD +VYD++VR+ Q F RYPLI GQGNFG+IDGDSAAA RYTE RM ++AE +L Sbjct: 87 YHPHGDSAVYDTIVRMVQDFSLRYPLIDGQGNFGSIDGDSAAAMRYTEVRMDRIAEEMLV 146 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 ++++ V F Y+ EP V P++ PNLL NG++GIAVGMAT++P HN+ E+ + L Sbjct: 147 DIEKETVPFIPNYDGSLKEPEVLPARLPNLLINGSTGIAVGMATNMPPHNISEVIDGILM 206 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265 LI+NPE I +L+ I GPDFPTG I+ + I +Y GRG R+RA ++E+ + Sbjct: 207 LIENPETQISELMTVIKGPDFPTGAHILGT-AGIRSAYMTGRGPIRMRAVAEIQELKKDR 265 Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFPKNRSLDPDL 324 I+VTE+PYQV K++LIE IA+L+ K I + D+RDES E +R+V+ +R ++P++ Sbjct: 266 QQIIVTELPYQVNKAKLIENIAQLVREKVINGISDLRDESDREGIRVVV-ELSRGVNPNV 324 Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384 ++ ++ + M T F + +N+ + P+ + L +L+ +L +R E++ +R+ + ++ + Sbjct: 325 VLNQLYKHTQMATTFGV-INLALVDGKPKELNLKQLLEIYLEYRMEIIQKRTLYDLRKSE 383 Query: 385 RRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAILNLRLRSLRK 441 R IL+GL IA NID ++A+I+ N D+ K ++ F+L E Q AIL +RL+ L Sbjct: 384 ERAHILEGLRIALDNIDAVVALIKGSANADQAKQGLIDNFALDEVQAKAILEMRLQRLTG 443 Query: 442 LEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCE 501 LE +I EL+ L+ + E++ +L S + ++ I E+ E+K+ K D+ R R Sbjct: 444 LETRKILDELEALVKQIEELRKILASDELKYEIIRTELSELKD---KYGDIRRTRIVHNT 500 Query: 502 VSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS--------ALHFKEGDSLKI 553 + D + +I +E + V I+N G+I+ + + + + KE D ++ Sbjct: 501 ENVTD-----EDLIPEEDVVVTITNSGYIKRIPLDTYTMQRRGGRGIIGMEMKEEDFVEN 555 Query: 554 ALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV- 607 + T + IL + G K Y +P G S + G+AI L++L + +V A + Sbjct: 556 LFISSTHNYILFFTNRGRLYWQKVYEIPEG---SRQSRGKAIVNLLELQEGE-MVNAMIS 611 Query: 608 ---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD---HV 661 + L + + G SE R G + VS +E +LV + D + Sbjct: 612 VEEFAEDKYLFMATRAGTVKKTPLSEFRNPRRAG--IIAVSLDEGDELVKVLLTDGKQEI 669 Query: 662 AVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712 +V + K + FS + + M R +GVR + +G +V+ + + T + Sbjct: 670 MMVSKKGKAIRFSEEDVRPMGRTARGVRGMTL-EGPDDEVVSLDLVDETTTL 720 >gi|218778344|ref|YP_002429662.1| DNA gyrase, A subunit [Desulfatibacillum alkenivorans AK-01] gi|218759728|gb|ACL02194.1| DNA gyrase, A subunit [Desulfatibacillum alkenivorans AK-01] Length = 811 Score = 404 bits (1037), Expect = e-110, Method: Compositional matrix adjust. Identities = 223/524 (42%), Positives = 335/524 (63%), Gaps = 20/524 (3%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 EN+ +S+ +++ YL YA+S I RA+PD+RDG KPVHRR++ M E+ D+ +KK Sbjct: 5 ENMLEISIESEMKKSYLDYAMSVIIGRALPDVRDGLKPVHRRVLFTMHELKNDYNKPYKK 64 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 SAR+VG+V+GK HPHGD ++YD++VR+AQ F RYPL+ GQGNFG+IDGD AAA RYTE Sbjct: 65 SARVVGDVMGKYHPHGDAAIYDTMVRMAQDFSLRYPLVDGQGNFGSIDGDPAAAMRYTEV 124 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 RM ++A IL+ +D++ VDF Y+E EP V P++ PNLL NG++GIAVGMAT+IP H Sbjct: 125 RMQKMAHAILEDLDKETVDFIPNYDETIQEPTVLPTRIPNLLVNGSAGIAVGMATNIPPH 184 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 N+ EI +A ALI+NP++ E+LL+Y+ GPDFPTGGII R I +Y GRG ++RA Sbjct: 185 NLGEITDALCALIENPKLMPEELLQYVPGPDFPTGGIIY-GRAGIHSAYSTGRGIIKIRA 243 Query: 255 RWCVEEVGR-GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIV 312 R VE+ R G +VVTE+PYQV K+R+IEKIA L+ K I L +RDES E +RI Sbjct: 244 RIMVEKDNRTGKETLVVTELPYQVNKARVIEKIAHLMKDKVIEGLAFVRDESDREGMRIA 303 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 + K + +++ ++ + +E F + + + R P+++ L L+ ++AHR+ V+ Sbjct: 304 MGLKKDEM-ASIIINKLYKHTQLENSFGIILLSIVNNR-PELLNLKETLQYFIAHRKVVV 361 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVD 429 RR+ + + + R IL+G IA N+DE++ +IR P + +++RF LT+ Q Sbjct: 362 IRRTKYELAKAEARAHILEGYKIAIDNLDEVVKLIRASSTPLEAREGLMARFDLTQIQAQ 421 Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI--REVKEIFS 487 AIL++RL+ L LE +++ E L+ + +L S +Q+ EI E+ E+ + Sbjct: 422 AILDMRLQKLTGLEIEKVEEEYRELIKAIARYKEILAS-----DQLVLEIVRDELLEVRT 476 Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR 531 + D RRT E+ + + MI +E + V IS+RG+I+ Sbjct: 477 EYVD--ERRT---EIVDDEGEITIEDMIVEEDMVVTISHRGYIK 515 >gi|71737548|ref|YP_275809.1| DNA gyrase subunit A [Pseudomonas syringae pv. phaseolicola 1448A] gi|71558101|gb|AAZ37312.1| DNA gyrase, A subunit [Pseudomonas syringae pv. phaseolicola 1448A] Length = 928 Score = 404 bits (1037), Expect = e-110, Method: Compositional matrix adjust. Identities = 236/603 (39%), Positives = 358/603 (59%), Gaps = 57/603 (9%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 V++ L++ YL YA+S I RA+PD RDG KPVHRR++ AMSE+G D+ +KKSAR+V Sbjct: 11 VNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDWNKPYKKSARVV 70 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG++DGD+AAA RYTE RMT++ Sbjct: 71 GDVIGKYHPHGDIAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRYTEVRMTKL 130 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A +L + ++ VD+ Y+ + P V P++ PNLL NG+SGIAVGMAT+IP HN+ E+ Sbjct: 131 AHELLADLHKETVDWVPNYDGTEMIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHNLGEV 190 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 + LALIDNPE++I++L++YI GPDFPT II R I+E+YR GRG +RAR VE Sbjct: 191 IDGCLALIDNPELTIDELMQYIPGPDFPTAAII-NGRAGIIEAYRTGRGRIYMRARSIVE 249 Query: 260 EVGR--GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317 ++ + G IV+TE+PYQ+ K+RLIEKIAEL+ K++ + ++RDES +D V+ Sbjct: 250 DIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKLEGITELRDESDKDGMRVVIELR 309 Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377 R P++++ +++ + +++ F +N+ L GR P+++ L +L+ ++ HRREV+ RR+ Sbjct: 310 RGEVPEVVLNNLYAQTQLQSVFGINIVALIDGR-PRILNLKDLLEAFVRHRREVVTRRTV 368 Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV----------------MVSR- 420 F ++ R IL+G +A NID +IA+I+ P MV R Sbjct: 369 FELRKARERGHILEGQAVALSNIDPVIALIKASPTPAEAKEALIKTPWESSAVVEMVERA 428 Query: 421 --------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEK 460 + L+ Q AIL LRL L LE ++ E +L + + Sbjct: 429 GADSCRPENLDPQYGLREGKYFLSPEQAQAILELRLHRLTGLEHEKLLGEYQEILNQIGE 488 Query: 461 IDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI 520 + +LNS + I E+ ++ + + RRT + +R D TL + E+E + Sbjct: 489 LIRILNSATRLMEVIREELEVIRSEYGDA-----RRTEILD-ARLD-LTLGDLITEEERV 541 Query: 521 TVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKA 572 V IS+ G+ ++ + SA K+ D + L A++ +L+ S+ GK Sbjct: 542 -VTISHGGYAKTQPLAVYQAQRRGGKGKSATGIKDEDYIAHLLVANSHTTLLMFSSKGKV 600 Query: 573 YTL 575 Y L Sbjct: 601 YWL 603 >gi|294054233|ref|YP_003547891.1| DNA gyrase, A subunit [Coraliomargarita akajimensis DSM 45221] gi|293613566|gb|ADE53721.1| DNA gyrase, A subunit [Coraliomargarita akajimensis DSM 45221] Length = 841 Score = 403 bits (1036), Expect = e-110, Method: Compositional matrix adjust. Identities = 259/718 (36%), Positives = 400/718 (55%), Gaps = 44/718 (6%) Query: 4 DNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63 DN S+SNT +A S+ ++ Y+ Y++S I RA+PD RDGFKPV RRI++AM Sbjct: 3 DNPSDSNTPSHMRAQATSITDIMQTAYIDYSMSVIVSRALPDARDGFKPVQRRILYAMLR 62 Query: 64 MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123 GL F K A +VGEV+ HPHGD SVYD+LVRLAQ +V RYPLI QGNFG+IDG Sbjct: 63 EGLLHNRPFDKCAGVVGEVLKNYHPHGDSSVYDTLVRLAQDWVMRYPLIVPQGNFGSIDG 122 Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183 DS AAYRYTE ++ +AE L+ +DED VDF Y E +EP V P+ PNLL NG++GI Sbjct: 123 DSPAAYRYTECKLQAIAEDCLKDIDEDTVDFVPNYKESTTEPSVLPAALPNLLMNGSTGI 182 Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243 AVGM T+IP HN+ EI +AA A+IDNP+I +++L+++I GPDFP GG I +S +ESY Sbjct: 183 AVGMTTNIPPHNLNEIIDAACAIIDNPKIELDELIQFIPGPDFPGGGFI--HGKSGIESY 240 Query: 244 -RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302 + GRG R R V E +G I+++ IPY V ++ L+ +IAELI K I + D+R Sbjct: 241 LKTGRGIVRTRGVAEVVE-NKGKEEIIISAIPYNVNRASLVMRIAELIKEKAIEGISDLR 299 Query: 303 DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362 DES E+ RIV+ K R P +++ ++ + +E+ F + + L R P+ M + +L Sbjct: 300 DESTEETRIVIELK-RGAIPRVIINQLYKSTALESSFGVILLALD-NRRPKQMNIKEMLT 357 Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVS 419 ++ HRREV++RR++FR++ + R IL+G IA N+D+ + IIR N ++ K +++ Sbjct: 358 CYIDHRREVIYRRTAFRLRKAEARAHILEGYKIALDNMDDFVKIIRASKNREEAKVSLMA 417 Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479 ++ LTE Q +AIL LRL L LE +I+ E L+ ++ +L + + I E+ Sbjct: 418 KYPLTEIQTNAILELRLYQLTGLERDKIEEEYRKLMELIGELKDILENESRLLEVIKEEL 477 Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------R 531 E+KE + RR+ V D + ++ E + ++++G+I R Sbjct: 478 GEMKEKYGNP-----RRSQVIAV---DGDISMEDLVPNEGCMITVTHKGFIKRTSLDEYR 529 Query: 532 SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGH 586 S K + E D ++ A T D ++ G K Y +P G S Sbjct: 530 SQKRGGKGVIGSGQYEDDFVEHLFTASTHDYVMCFMNSGRVYVEKVYHIPEG---SRTAK 586 Query: 587 GEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLK 643 G A+ + +L + I +D + + +V++++ + N RKG + Sbjct: 587 GRAMANVFELQEGEKIAAMICVKDFDESAQSIVLATENGVTKKTKLSDFRNHRKG-GIIG 645 Query: 644 VSSEEKMKLV-VKVTG--DHVAVVGENRKLLIFSIDQIPEMSRG----KGVRLQSYKD 694 ++ +E LV ++T D + +V N + + F + + R +G++L+S D Sbjct: 646 INIDEGDNLVGARLTSGEDDIILVTSNAQSIRFPETDLRDQGRNTRGVRGIKLKSEND 703 >gi|329942858|ref|ZP_08291637.1| DNA gyrase, A subunit [Chlamydophila psittaci Cal10] gi|332287451|ref|YP_004422352.1| DNA gyrase subunit A [Chlamydophila psittaci 6BC] gi|313848030|emb|CBY17028.1| DNA gyrase subunit A [Chlamydophila psittaci RD1] gi|325507182|gb|ADZ18820.1| DNA gyrase subunit A [Chlamydophila psittaci 6BC] gi|328815118|gb|EGF85107.1| DNA gyrase, A subunit [Chlamydophila psittaci Cal10] gi|328914699|gb|AEB55532.1| DNA gyrase, A subunit [Chlamydophila psittaci 6BC] Length = 830 Score = 403 bits (1036), Expect = e-110, Method: Compositional matrix adjust. Identities = 263/722 (36%), Positives = 402/722 (55%), Gaps = 53/722 (7%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 EE + +L ++E YL Y++S I RA+PD+RDG KP RRI++AM ++ L GA + Sbjct: 5 EEIIVPKNLEEEMKESYLRYSMSVIISRALPDVRDGLKPSQRRILYAMKQLNLTPGAKHR 64 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 K A+I G+ G HPHG+ +Y +LVR+AQ + RYPL+ GQGNFG+IDGD AAA RYTE Sbjct: 65 KCAKICGDTSGDYHPHGESVIYPTLVRMAQNWAMRYPLVDGQGNFGSIDGDPAAAMRYTE 124 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 AR+T A +++ +D+D VD Y+E EPVVFPSKFPNLL NG+SGIAVGMAT+IP Sbjct: 125 ARLTHSAIFLMEDLDKDTVDMVSNYDETKHEPVVFPSKFPNLLCNGSSGIAVGMATNIPP 184 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E+ EA L ++ P++SIE++LE + GPDFPTGG+I S E I +Y GRG +VR Sbjct: 185 HNLGELIEATLLVLSKPDVSIEEILEVMPGPDFPTGGLICGS-EGIRSTYYTGRGKIKVR 243 Query: 254 ARWCVEE-VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRI 311 AR VEE + I++TE+PY V KSRLIE+IA+L+ K + + D+RDES +D +R+ Sbjct: 244 ARLHVEENADKHRENIILTEMPYNVNKSRLIEQIADLVNDKTLSGISDVRDESDKDGIRV 303 Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371 VL K + ++++ ++ +D++ F NM L +P+ M + ++ W+ HR EV Sbjct: 304 VLELK-KGESSEVVINRLYKFTDIQVTFGANMLALDKN-LPRTMNIHRMISAWVRHRTEV 361 Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQV 428 + RR+ + + + R IL+G L A +D+++ IRN D K ++ +F TE+Q Sbjct: 362 IRRRTRYELNKAEARAHILEGFLKALSCLDDVVHTIRNSDSKEHAKHQLIEKFGFTEHQS 421 Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488 AIL LRL L LE +I+ E D L+ + +L + I E++E++++ Sbjct: 422 IAILELRLYQLTGLEAEKIQKEYDELVNKIAYYKRVLADEGLVKDIIRNELQELQKLHKT 481 Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSVDL 540 RRTT AD + +I EP+ + IS +++ + K + Sbjct: 482 P-----RRTTI--EFDADDIRDIEDIITNEPVIITISGDDYVKRMPVKVFREQKRGGHGV 534 Query: 541 SALHFKEG-DSLKIALHAHTTDRILLLSTDGKAY-----TLPAG----------NLLSGR 584 S K+G D LK A T D +L+ + G+ Y LP G N L G Sbjct: 535 SGFDMKKGSDFLKAVYSASTKDYLLIFTNFGQCYWLKVWQLPEGERRAKGKPIINFLEGI 594 Query: 585 GHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR-KGKTFLK 643 GE + ++++ + ++ F++ +T +V +AF +N R KG L+ Sbjct: 595 RPGEQLAAVLNIKNFEN--AGFLFLATKHGVVKKVALDAF--------SNPRKKGIRALE 644 Query: 644 VSSEEKMKLVVKVTGDHVAVVGENR--KLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDV 700 + +++ V +T + V+ R + F D++ M R +GVR S K+ V Sbjct: 645 IDDGDELIAAVHITSEDEKVMLFTRLGMAVRFPHDKVRPMGRTARGVRGVSLKNEKDRVV 704 Query: 701 IC 702 C Sbjct: 705 AC 706 >gi|298372913|ref|ZP_06982903.1| DNA gyrase, A subunit [Bacteroidetes oral taxon 274 str. F0058] gi|298275817|gb|EFI17368.1| DNA gyrase, A subunit [Bacteroidetes oral taxon 274 str. F0058] Length = 853 Score = 403 bits (1036), Expect = e-110, Method: Compositional matrix adjust. Identities = 246/693 (35%), Positives = 401/693 (57%), Gaps = 46/693 (6%) Query: 22 LRFALEER----YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSAR 77 +R +EE+ Y+ Y++S I RA+PD+RDGFKPVHRR+++ M+E+G +KKSAR Sbjct: 8 IRVDIEEQMRSAYIDYSMSVIVSRALPDVRDGFKPVHRRVLYGMNELGNTSDKPYKKSAR 67 Query: 78 IVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMT 137 IVGEV+GK HPHGD S+Y +LVRLAQP+ RYPL+ GQGNFG++DGD AA RYTEAR+ Sbjct: 68 IVGEVMGKYHPHGDSSIYGTLVRLAQPWAMRYPLVDGQGNFGSLDGDEPAAMRYTEARLM 127 Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197 ++AE +L +D++ VDF+ ++E EPVV P++ PNLL NG+SGIAVGMAT++ HN+ Sbjct: 128 KLAEEMLSDIDKNTVDFQPNFDETLKEPVVLPARVPNLLVNGSSGIAVGMATNMAPHNLS 187 Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257 E +A +A I NP+I+IE+L+ +I PDFPTGGII + E++ GRG +R++ Sbjct: 188 ETIDAIVAYIRNPQITIEELMHHIKAPDFPTGGIIY-GYAGVREAFETGRGRIIIRSKCE 246 Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFPK 316 +E G IVVTEIPY V ++ LI+ IA L K++ + +I DES + +RIV+ K Sbjct: 247 IETSANGHDKIVVTEIPYMVNRAELIKAIAALAEEKKVEGIANINDESDRQGLRIVIDIK 306 Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376 R + ++++ ++ S +++ F +N L GR P+ + L ++ ++ HR EV+ RR+ Sbjct: 307 -RDGNANVILNKLYKYSQLQSSFSVNNVALVKGR-PRTLNLIDLISNFVEHRHEVVTRRT 364 Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVDAILN 433 F + R E+L+GL+I N+DE I IIRN P +++RFSLTE Q ++ Sbjct: 365 QFELDKALERAELLEGLMIILDNLDEAIQIIRNSKTPAEAQERLIARFSLTERQAAYVVE 424 Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493 LRLR L +E+ ++++E + LL E + +L +++ I E+ E+ F Sbjct: 425 LRLRQLTAMEQDKLRTEYEELLKRIEDLRDILAKVERRMKIIEDELMELGSKFGD----- 479 Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR-----SLKSHS---VDLSALHF 545 +RRT E+ A + + + + + IS++G+I+ K+ + V Sbjct: 480 KRRT---EIVYATEDMNPEDFYADDQMIITISHQGYIKRTALAEFKAQNRGGVGSKGGAT 536 Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIV 603 K+ D ++ A + +L + G+ Y L ++ G G A+Q ++++ + D + Sbjct: 537 KDEDFIEYIYPATMHNYMLFFTQKGRCYWLKVYDIPEGSKTSKGRAVQNMLNIEAD-DKI 595 Query: 604 TAFV---------YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS--EEKMKL 652 AF+ Y+S L+ + G I++++ + A +R + + + E + Sbjct: 596 NAFIRVKNLQDPDYNSKHYLVFCTQNG---IIKKTCLEAYSRPRQNGVNAITIRENDQVI 652 Query: 653 VVKVTGDHVAVVGENR--KLLIFSIDQIPEMSR 683 V++T + +V NR + + F ++ EM R Sbjct: 653 QVRLTDGNSEIVIANRQGRAIRFHESKVREMGR 685 >gi|163746265|ref|ZP_02153623.1| DNA gyrase, A subunit [Oceanibulbus indolifex HEL-45] gi|161380150|gb|EDQ04561.1| DNA gyrase, A subunit [Oceanibulbus indolifex HEL-45] Length = 889 Score = 403 bits (1036), Expect = e-110, Method: Compositional matrix adjust. Identities = 231/601 (38%), Positives = 356/601 (59%), Gaps = 51/601 (8%) Query: 30 YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89 YL YA+S I RAIPDLRDG KPVHRRI+ AM E G +++KSAR VG+V+G+ HPH Sbjct: 5 YLDYAMSVIVSRAIPDLRDGLKPVHRRILFAMHETGNTHEKSYRKSARPVGDVMGQYHPH 64 Query: 90 GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDE 149 GD ++YD+LVR+AQ F PL+ GQGNFG++DGD+ AA RYTE RM + A +L +D+ Sbjct: 65 GDSAIYDALVRMAQDFSMSLPLLDGQGNFGSMDGDNPAAMRYTEVRMDKPAAFLLADIDK 124 Query: 150 DAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDN 209 D VD++D Y+ + EP V P++FPN+L NG GIAVGMAT+IP HN+ E+ +A LALI++ Sbjct: 125 DTVDYQDNYDGKQKEPTVLPARFPNMLVNGAGGIAVGMATNIPPHNLGEVIDATLALIED 184 Query: 210 PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIV 269 P+++ E+L++Y+ GPDFPTGGI++ R ++Y GRG +RA+ VEE+ + W IV Sbjct: 185 PDLTSEQLIDYVPGPDFPTGGIML-GRSGARKAYLEGRGSVVIRAKTRVEEIRKDRWAIV 243 Query: 270 VTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKNRSLDPDLLMES 328 + EIPYQV K+ +IEKIAE + K+I + ++DES + VR+V+ K R +++M Sbjct: 244 IDEIPYQVNKASMIEKIAEQVRDKKIEGISHVQDESDRNGVRVVVELK-RDATAEVVMNQ 302 Query: 329 IFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVE 388 ++ + M+T F NM L+ GR P+ + L L ++ R +V+ RR+++ ++ R Sbjct: 303 LYRFTPMQTYFGCNMLALNGGR-PEQLTLRKFLSYFIDFREDVVARRTAYLLRKARERSH 361 Query: 389 ILKGLLIAYLNIDEIIAIIRN----EDKPKPVMVSR------------------------ 420 IL GL +A NIDE++A IR+ + + +M R Sbjct: 362 ILCGLAVAVTNIDEVVATIRSSTDASEAREKLMTRRWPAEDILPYIALIDDPTHTANDDG 421 Query: 421 -FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479 ++L+E Q AIL LRL+ L ++ ++ EL+ L ++ ++ +L S ++ I+ E+ Sbjct: 422 TYNLSEAQARAILELRLQRLTQIGVKEVTDELEELASKIKEYLEILGSRERILGIISDEL 481 Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------R 531 REV+E+F+ RRT + S + +I +E + V +++ G+I R Sbjct: 482 REVRELFAVP-----RRTEIVDWS---GDMDDEDLIAREDMVVTVTSGGYIKRTPLVDFR 533 Query: 532 SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEA 589 + + +S + KE D + A+T ++L +TDG Y L L G G+A Sbjct: 534 AQRRGGKGVSGMQTKEEDVVTNLFVANTHTQLLFFTTDGMVYKLKTWRLPQGARTAKGKA 593 Query: 590 I 590 I Sbjct: 594 I 594 >gi|219870281|ref|YP_002474656.1| DNA gyrase subunit A [Haemophilus parasuis SH0165] gi|219690485|gb|ACL31708.1| DNA gyrase subunit A [Haemophilus parasuis SH0165] Length = 888 Score = 403 bits (1036), Expect = e-110, Method: Compositional matrix adjust. Identities = 239/607 (39%), Positives = 354/607 (58%), Gaps = 57/607 (9%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 +++ +S+ L+ YL YA+S I RA+PD+RDG KPVHRR++ +M + G + K Sbjct: 6 KDIIPISIEEELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQSGNVSSKPYVK 65 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 SAR+VG+VIGK HPHGD +VY+++VR+AQPF RY L+ GQGNFG+IDGD+ AA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDFAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRYTEV 125 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 RM ++ + +L +D++ VDF Y+ ++ P V P+K P LL NG+SGIAVGMAT+IP H Sbjct: 126 RMQKITQELLTDLDKETVDFSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATNIPPH 185 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 N+ E+ LA I+N +I+IE+L+++I GPDFPT II R+ I ++YR GRG VRA Sbjct: 186 NLNEVLNGCLAYIENEQITIEELMQHIPGPDFPTAAII-NGRKGIEDAYRTGRGKVYVRA 244 Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVL 313 + VE +G IVVTE+PYQV K LIEKIAEL+ KRI + I D S + + IV+ Sbjct: 245 KASVETTSKGREQIVVTELPYQVNKKNLIEKIAELVRDKRIEGISSIEDYSDKKGISIVI 304 Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373 KN ++ ++++ +++ L+ M+ F +NM L G+ P++ L I++ ++ HRREV+ Sbjct: 305 EIKNNAVG-EVVLNNLYALTQMQVTFGINMVALDHGQ-PKIFNLKQIIEAFVMHRREVVT 362 Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE-----------DKP--------- 413 RR+ F ++ R IL+GL IA NID +I +IRN D+P Sbjct: 363 RRTVFELRKARERAHILEGLAIALANIDPVIELIRNSKTADEAREGLLDRPWSLGNVAPM 422 Query: 414 ---------KP--------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLA 456 +P V ++ L+E Q AIL LRL L LE +I E LL Sbjct: 423 LEAAGVDASRPEDLASEFGVRDGQYYLSEVQARAILELRLHRLTGLEHEKIVDEYKELLV 482 Query: 457 EKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE 516 E ++ +LNS ++ I E+ ++K F RRT E++ A + +I Sbjct: 483 EISELLHILNSSERLMEVIREELEKIKAEFGDE-----RRT---EITAASGDINLEDLIA 534 Query: 517 KEPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568 +E + V +S+ G+++ + + SA KE D ++ L A+T D IL S+ Sbjct: 535 QEDVVVTLSHAGYVKYQPLSDYEAQRRGGKGKSATKMKEDDFIEKLLVANTHDTILCFSS 594 Query: 569 DGKAYTL 575 G+ Y L Sbjct: 595 CGRLYQL 601 >gi|229824640|ref|ZP_04450709.1| hypothetical protein GCWU000282_01987 [Catonella morbi ATCC 51271] gi|229786011|gb|EEP22125.1| hypothetical protein GCWU000282_01987 [Catonella morbi ATCC 51271] Length = 838 Score = 403 bits (1035), Expect = e-110, Method: Compositional matrix adjust. Identities = 249/704 (35%), Positives = 402/704 (57%), Gaps = 39/704 (5%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 N + V+L + +L YA+S I RA+PD+RDG KPVHRRI++ M+EMG+ +KKS Sbjct: 11 NYEVVNLSNEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRILYGMNEMGVTPDKPYKKS 70 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 ARIVG+V+GK HPHGD ++Y+++VR+AQPF R L+ G GNFG++DGD AAA RYTEAR Sbjct: 71 ARIVGDVMGKYHPHGDSAIYEAMVRMAQPFSYRELLVDGHGNFGSVDGDGAAAMRYTEAR 130 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 M+++A +L+ +++D VDF+D Y++E+ EPV PS+FPN+L NG +GIAVGMAT+IP HN Sbjct: 131 MSKIAMEMLKDINKDTVDFKDNYSQEEKEPVTLPSRFPNVLVNGAAGIAVGMATNIPPHN 190 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 + E +A L+ NP++S+ +L+E + GPDFPTGGI++ + I ++Y+ G+G VR+R Sbjct: 191 LGETIDALSLLMKNPDVSVNELMEALPGPDFPTGGIVM-GKSGIRKAYQTGKGKIIVRSR 249 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLF 314 +E++ IVVTEIPY V K++L+E+IAEL K+I + + DES E +RIV+ Sbjct: 250 VEIEQMAHDKERIVVTEIPYGVNKAKLVERIAELAREKKIEGITYVADESGREGMRIVVE 309 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 + R ++++ +++ + ++ F NM + G VP++M L IL ++L ++ EV+ R Sbjct: 310 VR-RDTSANVVLNNLYKYTALQVTFGFNMLAIDKG-VPKIMSLKEILTKYLEYQIEVIRR 367 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAI 431 R+ F + + R IL+GL A IDEIIAIIR + + K ++ RF + Q AI Sbjct: 368 RTEFEKRKAEDRAHILEGLRKALDFIDEIIAIIRGSHDTEVAKAQLIERFEFSPIQAQAI 427 Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491 L++RL L LE +I++E ++L+ ++ +L+S I E+ ++K F Sbjct: 428 LDMRLARLTGLEREKIEAEYNDLMELIRRLTEILSSEANIMAIIEDELADIKNRFP---- 483 Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVI--SNRGWIRSLKSHSVDLS-------- 541 G RRT R + T + E V+I ++ G+I+ + + Sbjct: 484 -GERRTEL----RVGELTSIEDEDLIEEEDVLIALTSNGYIKRMTQDEFQVQNRGGRGVK 538 Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLN---- 597 + + D+++ + T D +L + GK Y ++ + I ++ LN Sbjct: 539 GMGMSDNDNIQTLVSCSTHDSLLFFTNKGKVYQSKGYDIPEYGRTAKGIPVVNLLNIEKE 598 Query: 598 -HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEI--IANTR-KGKTFLKVSSEEKMKLV 653 + ++I+ D L V+ G IV+ S++ AN R G L + ++++ V Sbjct: 599 EYVKEIIVLHPSDEDQYLFFVTKNG---IVKRSDVSAYANIRNNGLIALNMREDDELINV 655 Query: 654 VKVTGDHVAVVG-ENRKLLIFSIDQIPEMSR-GKGVRLQSYKDG 695 + G ++G N + F+ M R GVR ++G Sbjct: 656 LVTNGQQNIIIGSHNGYAMTFAETDARIMGRTATGVRGMKLREG 699 >gi|254457652|ref|ZP_05071080.1| DNA gyrase, A subunit [Campylobacterales bacterium GD 1] gi|207086444|gb|EDZ63728.1| DNA gyrase, A subunit [Campylobacterales bacterium GD 1] Length = 829 Score = 403 bits (1035), Expect = e-110, Method: Compositional matrix adjust. Identities = 266/768 (34%), Positives = 430/768 (55%), Gaps = 46/768 (5%) Query: 12 LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71 L + ++ +++ L+ YL Y++S I RA+PD+RDG KPVHRRI++AM ++ L GA Sbjct: 5 LNNDEIQTINIEETLQNSYLDYSMSVIVGRALPDVRDGLKPVHRRILYAMDKLNLSHGAK 64 Query: 72 FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131 FKKSARIVG+VIG+ HPHGD +VYD+LVR+AQ F R L+ GQGNFG++DGDSAAA RY Sbjct: 65 FKKSARIVGDVIGQYHPHGDTAVYDALVRMAQDFSMRMQLVDGQGNFGSVDGDSAAAMRY 124 Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191 TEARMT+ A +L+ ++++ V+ D Y+ EP V P++ PNLL NG+SGIAVGMAT+I Sbjct: 125 TEARMTKYAGELLKDLEKNTVNMIDNYDGTTKEPDVMPTRVPNLLINGSSGIAVGMATNI 184 Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251 P HN +EI AL+ NP+IS+ +L+E+I PDFPTGGII ++ I+++Y GRG + Sbjct: 185 PPHNPREILTGLKALLANPDISLVELMEFIKAPDFPTGGIIF-GKKGIMDAYETGRGRIK 243 Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311 VRA+ +E+ + IV+ E+PYQV K+RLIE IA L+ K I + ++RDES D Sbjct: 244 VRAKTHIEQKSK-KEVIVIDELPYQVNKARLIENIANLVKDKMIEGVSEVRDESDRDGMR 302 Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371 V+ R ++++ ++F + M+T F + M + + + P++ + ILK ++ HR+ + Sbjct: 303 VVIELKRDAMSEIVLNNLFKQTSMQTTFGIIMLSI-LNQEPRIFGIITILKHFINHRKTI 361 Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQV 428 + RR+ F ++ R IL+GL A I+++I +IR NE+ K +VS F ++ Q Sbjct: 362 IIRRTIFDLEKAKARAHILEGLKKAISIIEDVIRVIRASKNEELAKENLVSEFDFSDIQA 421 Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488 +I+ +RL L LE +I++EL L+ E ++S+L S + + IA E EV + + Sbjct: 422 ASIVAMRLGRLTGLEIEKIENELLELMTLIEYLESILRSEEVLHSIIAEEFDEVLDTYGS 481 Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSVDL 540 + RRT + + +I EP+ V I++RG+I+ + K Sbjct: 482 N----ERRTE---IEDDYDDIDIEDLIPNEPMVVTITHRGYIKRVPLTLYEKQKRGGKGK 534 Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLID 595 +A+ E D ++ +T D +L ++ G K Y +P G+ ++ G+A+ L++ Sbjct: 535 TAVTTYEDDFIERFFTCNTHDTLLFVTDRGQLHWLKVYKIPEGSRIA---KGKAVVNLLN 591 Query: 596 LNHNQ---DIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652 L ++ I+ + L+ + KG SE +N R V E+ + Sbjct: 592 LMADERIRSIIPTTDFSEDKGLVFFTQKGVVKRTNLSE-FSNIRSNGVRAIVLDEDDALI 650 Query: 653 VVKVTGDHVAVVGENRKL---LIFSIDQIPEMSRG----KGVRLQSYKDGGI-SDVICFK 704 K+ + + KL + F I++ E R +G++ + +D I +++I Sbjct: 651 TAKIADQSIKYLFIMTKLAQCIKFDIEKTREQGRSTRGVRGIKFKHPEDEVIDANIIAND 710 Query: 705 ICEGLTWIDSA-GRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751 E L + G+ + E L RGG G + K ++GK++ Sbjct: 711 EQEILIVAEKGIGKRTDAGEY----RLTNRGGSGVIAMKMTSKTGKYV 754 >gi|104780668|ref|YP_607166.1| DNA gyrase subunit A [Pseudomonas entomophila L48] gi|95109655|emb|CAK14356.1| DNA gyrase, subunit A, type II topoisomerase [Pseudomonas entomophila L48] Length = 920 Score = 403 bits (1035), Expect = e-110, Method: Compositional matrix adjust. Identities = 234/603 (38%), Positives = 361/603 (59%), Gaps = 57/603 (9%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 V++ L + YL YA+S I RA+PD RDG KPVHRR+++AMSE+G D+ +KKSAR+V Sbjct: 11 VNIEDELRQSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMSELGNDWNKPYKKSARVV 70 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG++DGD+AAA RYTE RM ++ Sbjct: 71 GDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRYTEVRMAKL 130 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A +L + ++ VD+ Y+ + P V P+K PNLL NG+SGIAVGMAT+IP HN+ E+ Sbjct: 131 AHELLADLHKETVDWVPNYDGTEQIPAVMPTKIPNLLVNGSSGIAVGMATNIPPHNLGEV 190 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 + LALIDN +I++++L+++I GPDFPT G+I R+ I+E+YR GRG +RAR +E Sbjct: 191 IDGCLALIDNSDITVDELMQFIPGPDFPTAGLI-NGRQGIIEAYRTGRGRIYMRARSEIE 249 Query: 260 EVGR--GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317 ++ + G IVVTE+PYQ+ K+RLIEKIAEL+ K+I + ++RDES +D ++ Sbjct: 250 DIDKVGGRQQIVVTELPYQLNKARLIEKIAELVKEKKIEGITELRDESDKDGMRIVIELR 309 Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377 R P++++ +++ + +++ F +N+ L GR P+++ L +L+ ++ HRREV+ RR+ Sbjct: 310 RGEVPEVVLNNLYQQTQLQSVFGINIVALIDGR-PRLLNLKDLLEAFVRHRREVVTRRTV 368 Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK----------------PVMVSR- 420 F ++ R IL+G +A NID +IA+I+ P VMV R Sbjct: 369 FELRKARERGHILEGQAVALSNIDPVIALIKASPTPSEAKEALISTAWESSAVQVMVERA 428 Query: 421 --------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEK 460 + L+ Q AIL+LRL L LE ++ +E +L + + Sbjct: 429 GADSCRPEDLPEQYGLREGKYYLSPEQAQAILDLRLHRLTGLEHEKLLAEYQEILEQIGE 488 Query: 461 IDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI 520 + +L+S ++ I E+ ++ + + RRT E+ A MI +E Sbjct: 489 LIRILSSAERLMEVIREELEAIRAEYGDA-----RRT---EILDARHDLNYGDMIPEEER 540 Query: 521 TVVISNRGWIRS--LKSHSVDL------SALHFKEGDSLKIALHAHTTDRILLLSTDGKA 572 V IS+ G+ ++ L ++ SA K+ D ++ L A++ +LL S+ GK Sbjct: 541 VVTISHGGYAKTQPLSAYQAQRRGGKGKSATGVKDEDYIEHLLVANSHATLLLFSSKGKV 600 Query: 573 YTL 575 Y L Sbjct: 601 YWL 603 >gi|171779480|ref|ZP_02920444.1| hypothetical protein STRINF_01325 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171282097|gb|EDT47528.1| hypothetical protein STRINF_01325 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 817 Score = 403 bits (1035), Expect = e-110, Method: Compositional matrix adjust. Identities = 244/702 (34%), Positives = 408/702 (58%), Gaps = 30/702 (4%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 ++N+ V+L ++ ++ YA+S I RA+PD+RDG KPVHRRI++ M+E+G+ K Sbjct: 3 DKNLIDVNLASEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHK 62 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSARI G+V+GK HPHGD S+Y+++VR+AQ + R+ L+ G GNFG++DGD AAA RYTE Sbjct: 63 KSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTE 122 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 ARM+++A +L+ ++++ VDF+D Y+ + EP+V PS+FPNLL NG +GIAVGMAT+IP Sbjct: 123 ARMSKIALEMLRDINKNTVDFQDNYDGSEREPLVLPSRFPNLLVNGATGIAVGMATNIPP 182 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E +A ++DNP+++ +L+E + GPDFPTG +++ + I ++Y G+G +R Sbjct: 183 HNLGESIDAVKLVMDNPDVTTRELMEVLPGPDFPTGALVM-GKSGIRKAYETGKGSIVLR 241 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312 +R +E G IVVTE PY V K+++ E I L KRI + +RDES+ E +R + Sbjct: 242 SRTEIETTKSGRERIVVTEFPYGVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGIRFI 301 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 + + R ++++ ++F L+ ++T F NM + G VP+++ L I+ +++ H++EV+ Sbjct: 302 IEVR-RDASANVILNNLFKLTSLQTNFSFNMLAIENG-VPKILSLKQIIVDYIEHQKEVI 359 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVD 429 RR+ F ++R IL+GLLIA ++DE+I+IIRN + + ++SRF+L+E Q Sbjct: 360 VRRTEFDKAKAEKRAHILEGLLIALDHLDEVISIIRNSETDVIAQGELMSRFNLSERQSQ 419 Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489 AIL++RLR L LE +I++E D+LL + +L ++ I E+ E+K K Sbjct: 420 AILDMRLRRLTGLEREKIQAEYDDLLTLIADLADILAKPERVITIIKEEMDEIKR---KY 476 Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DLS 541 D R EV + + +IE+E + + +SN+G+I+ L + Sbjct: 477 ADPRRTELMVGEVL----SLEDEDLIEEEDVLITLSNKGYIKRLAQDEFRAQRRGGRGVQ 532 Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS-GR-GHGEAIQLLIDLNHN 599 + D ++ + +T D I ++ G+ Y L + GR G I L+ L+ Sbjct: 533 GTGVNDDDFVRELVSTNTHDHIYFMTNKGRVYRLKGYEIPEYGRTAKGLPIVNLLKLDEG 592 Query: 600 QDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655 + + T D+ L V+ +G +ESE + G L + +++ V++ Sbjct: 593 ETVQTIISEKGSDDNENYLFFVTRQGVVKRTKESEFSNIRQNGLKALNLKEGDELINVIR 652 Query: 656 VTGDHVAVVGENRKLLI-FSIDQIPEMSR-GKGVRLQSYKDG 695 G+ ++G + F+ + MSR GVR + ++G Sbjct: 653 TNGNDDIIIGTKTGYSVRFNESDVRSMSRSATGVRGVNLREG 694 >gi|90419651|ref|ZP_01227561.1| DNA gyrase/topo II, topoisomerase IV, A subunit [Aurantimonas manganoxydans SI85-9A1] gi|90336588|gb|EAS50329.1| DNA gyrase/topo II, topoisomerase IV, A subunit [Aurantimonas manganoxydans SI85-9A1] Length = 947 Score = 403 bits (1035), Expect = e-110, Method: Compositional matrix adjust. Identities = 248/688 (36%), Positives = 385/688 (55%), Gaps = 62/688 (9%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 + ++S+ ++ YL YA+S I RA+PD+RDG KPVHRRI++AM MGL F ++KS Sbjct: 15 GIDSISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYAMHGMGLTFNRPYRKS 74 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 A +VGEV+GK HPHGD S+YD+LVR+AQ + R PLI GQGNFG+IDGD AA RYTE R Sbjct: 75 AGVVGEVMGKYHPHGDSSIYDALVRMAQDWSLRAPLIEGQGNFGSIDGDPPAAMRYTETR 134 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 + +V++ +L +D++ V+F+D Y+ + EPVV P++FPNLL NG+ GIAVGMAT+IP HN Sbjct: 135 LYKVSDALLADIDKETVNFQDNYDGREQEPVVLPARFPNLLVNGSGGIAVGMATNIPPHN 194 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 + EI + +A+IDNP I++E+L+ +I GPDFPTG I++ R I+ +Y GRG +R + Sbjct: 195 LGEIVDGCVAMIDNPAITLEELMGFIPGPDFPTGAIVL-GRAGILSAYSTGRGSILMRGK 253 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315 VE + IV+TE+P+QV KS +IEK+A+L+ KRI + DIRDES D V+ Sbjct: 254 AHVEPMRNDREAIVITEVPFQVNKSTMIEKMADLVRDKRIEGISDIRDESDRDGYRVVVE 313 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 R D+++ ++ + ++T F NM L+ GR P+ M L +L +++ R EV+ RR Sbjct: 314 LKRDASSDVILNQLYRFTPLQTTFGANMVALNGGR-PEQMTLPDMLSAFISFREEVVNRR 372 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR------------ 420 + + ++ R +L GL IA NIDE+I +IR P + +++R Sbjct: 373 TKYLLRKARERAHVLVGLAIAVANIDEVIKLIRAAPDPATAREQLMTRAWEAKDVAPLIR 432 Query: 421 --------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466 + L+E Q AIL+LRL+ L L +I EL+ + E + +L+ Sbjct: 433 LIDDPRHRITEEGTYRLSEAQARAILDLRLQRLTALGRDEIGDELNKIGEEIREYLEILS 492 Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526 S + I E+ V++ F+ RRT E+S + +I +E + V +S+ Sbjct: 493 SRVRVREIIKEELIAVRDEFATP-----RRT---ELSEGAADMDDEDLIPREDMVVTVSH 544 Query: 527 RGWI--------RSLKSHSVDLSALHFK-EGDSLKIALHAHTTDRILLLSTDG-----KA 572 G+I RS + + + K + DS+ A+T +L S+ G K Sbjct: 545 GGYIKRVPLATYRSQRRGGKGRAGMSLKNDEDSVTRLFVANTHTPVLFFSSRGIVYKEKV 604 Query: 573 YTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY----DSTCKL--LVVSSKGNAFIV 626 + LP L S + G+A+ ++ L + I + D+ +L + +++G Sbjct: 605 WRLP---LASPQSRGKALINMLPLEKGERITSILPLPSDPDAAAELNVMFATTRGTVRRN 661 Query: 627 EESEIIANTRKGKTFLKVSSEEKMKLVV 654 + S+ R GK +K+ + L V Sbjct: 662 KLSDFTQVNRNGKIAMKLDEDGDEILAV 689 >gi|295398130|ref|ZP_06808179.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Aerococcus viridans ATCC 11563] gi|294973649|gb|EFG49427.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Aerococcus viridans ATCC 11563] Length = 859 Score = 403 bits (1035), Expect = e-110, Method: Compositional matrix adjust. Identities = 244/692 (35%), Positives = 385/692 (55%), Gaps = 40/692 (5%) Query: 30 YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89 +L YA+S I RA+PD+RDG KPVHRRI++ M+E+G+ +KKSARIVG+V+GK HPH Sbjct: 22 FLDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTSDKPYKKSARIVGDVMGKYHPH 81 Query: 90 GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDE 149 GD ++Y+S+VR+AQ F RY L+ G GNFG++DGD AAA RYTEARM+++A +++ +++ Sbjct: 82 GDSAIYESMVRMAQDFSYRYMLVDGHGNFGSVDGDQAAAMRYTEARMSKIAHEMVRDMNK 141 Query: 150 DAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDN 209 D VDF Y+ E+ EP V P++FPNLL NGT+GIAVGM T+IP+HN+ E+ A L+ N Sbjct: 142 DTVDFIPNYDGEEREPEVLPARFPNLLVNGTTGIAVGMTTNIPTHNLSEVIGAIKILMQN 201 Query: 210 PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIV 269 + + +L+E + GPDFPTGGI++ + I ++Y G+G VRA+ +E + G I+ Sbjct: 202 ADATTNELMEALPGPDFPTGGIVI-GKSGIRKAYETGKGTIIVRAKLDIETLSSGKERII 260 Query: 270 VTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESI 329 V EIPY V K++L+E+IAEL KR+ + +RDES + V+ + +++ ++ Sbjct: 261 VHEIPYMVNKAKLVERIAELARDKRVEGITAVRDESGREGMRVVIECRKDASASVIVNNL 320 Query: 330 FMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEI 389 + + ++T F +NM + G VP+ + L IL+ +L H+ EV+ RRS F + R I Sbjct: 321 YKYTQLQTNFGINMVAIVNG-VPRTLSLKEILQNYLLHQEEVIRRRSIFEKNKAEARAHI 379 Query: 390 LKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQ 446 L+GL IA +IDEI+ I+R D+ K + + L++ Q AIL++RL L LE + Sbjct: 380 LEGLQIALDHIDEIVNILRTSRSGDEAKARFIEDYKLSDKQSQAILDMRLVRLTGLEREK 439 Query: 447 IKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRAD 506 I E L+A+ + ++ +L S ++ I E+ E++ SK D R E+ D Sbjct: 440 IDKEHAELMAQIDYLNQVLGSETMRYQIIYDELIEIE---SKFGDDRRTELMVGEIHNID 496 Query: 507 KATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAH 558 + +IE+ + V ++ G+I R+ + + + D ++ L Sbjct: 497 ----DEDLIEESNVIVTLTQNGYIKRIDDVEFRAQNRGGTGVKGMSMNDDDFVETMLSTS 552 Query: 559 TTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD------IVTAFV 607 T D +L + G K Y +P GR + I ++ LN QD I + Sbjct: 553 THDSVLFFTNTGRVFHSKGYEIPE----FGRA-AKGIPVVNLLNLQQDETVQAMINVTPI 607 Query: 608 YDSTCK--LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVV 664 D+ K LL V+ G S+ G LK++ +++ VV +G D++ + Sbjct: 608 EDAEVKEHLLFVTKNGTVKRTNASDYFNIRNNGLIALKLAEGDELVKVVLTSGDDNIIIA 667 Query: 665 GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDG 695 + + F + M R GVR DG Sbjct: 668 SRDGYAVSFQETNVRSMGRTATGVRGIRLNDG 699 Score = 37.4 bits (85), Expect = 8.7, Method: Compositional matrix adjust. Identities = 44/155 (28%), Positives = 66/155 (42%), Gaps = 6/155 (3%) Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHN 599 L AL EGD L + D I++ S DG A + N+ S ++ I LN Sbjct: 641 LIALKLAEGDELVKVVLTSGDDNIIIASRDGYAVSFQETNVRSMGRTATGVRG-IRLNDG 699 Query: 600 QDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV---KV 656 +V V +LVV+ KG SE R GK ++ EK ++V V Sbjct: 700 DQVVGMSVLGPDDNVLVVTEKGYGKQTPASEYGIKNRGGKGVKTINVTEKNGILVGLTTV 759 Query: 657 TGDHVAVVGENRKLLI-FSIDQIPEMSRG-KGVRL 689 +G+ ++ N+ + I F I + R +GVRL Sbjct: 760 SGEEDIMLMTNQGIAIRFHAKNISQTGRATQGVRL 794 >gi|289548053|ref|YP_003473041.1| DNA topoisomerase (ATP-hydrolyzing) [Thermocrinis albus DSM 14484] gi|289181670|gb|ADC88914.1| DNA topoisomerase (ATP-hydrolyzing) [Thermocrinis albus DSM 14484] Length = 764 Score = 402 bits (1034), Expect = e-110, Method: Compositional matrix adjust. Identities = 243/605 (40%), Positives = 359/605 (59%), Gaps = 40/605 (6%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 V + + + Y+ YA+S I RAIPD+RDG KPV RRI++AM +MGL F KSARIV Sbjct: 6 VPIEEEVRQSYIDYAMSVIVGRAIPDVRDGLKPVQRRILYAMYDMGLFPEKPFVKSARIV 65 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G V+G HPHGDQ+VYD+LVR+AQ F YPLI GQGNFG++DGD AA RYTEA++++ Sbjct: 66 GTVLGYYHPHGDQAVYDALVRMAQDFNMNYPLIVGQGNFGSVDGDPPAAMRYTEAKLSRY 125 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A L+L+ +D++ VDF ++ EP V PSKFPNLL NGT+GIAVG+ATSIP HN+ E+ Sbjct: 126 ALLLLEDIDKETVDFVPNFDGSTREPAVLPSKFPNLLCNGTAGIAVGLATSIPPHNLSEV 185 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 C+A + L NP ++ ++++ I GPDFPTGG IVE+ + ++E Y GRG R+RA+ VE Sbjct: 186 CKAVIELAKNPHMTTQEIMRIIKGPDFPTGG-IVENYQELLEFYEKGRGQVRIRAKAHVE 244 Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFPKNR 318 +V G IVVTEIPYQV K+ LI++IAEL+ R+ + DIRDES E +RIV+ K R Sbjct: 245 KVAGGREQIVVTEIPYQVNKAELIKRIAELVRDGRLKEISDIRDESDKEGIRIVIELK-R 303 Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378 + ++E ++ L+ + FP+N VL G P+ + + +L+E++ HR EV+ RRS + Sbjct: 304 DASGEKVLEKLYKLTALRKNFPINFVVLIDGE-PRQVGIKTLLQEFIRHRLEVILRRSRY 362 Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAILNLR 435 ++ + R+ +++GLL A N+D +IA IR+ + + + + ++ LT Q +A+L++R Sbjct: 363 LLRKAEERLHLVEGLLKALANLDGVIADIRSSEDVHQAREKLTKKYGLTPLQAEAVLDMR 422 Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495 L+ L LE +++ E L + E ++ S + ++ I E++E+ L Sbjct: 423 LQRLTSLERNKLEEEERGLRQKVEYYRRVIGS---EDERVRILIEEMEELIRT---LPSV 476 Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555 R TF E + T ITVVI G I L +EG + I L Sbjct: 477 RRTFVEGLEGEDKT--------GSITVVIYQNGRI---------LPVTSMEEGVVVNI-L 518 Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD-IVTAFVYDSTCKL 614 D + L+S+ G+ Y + L G IDL + +V AFV Sbjct: 519 EVPYDDGLFLVSSKGRVYWIGGSQALQGS--------RIDLKEQGEYVVGAFVRSQASDR 570 Query: 615 LVVSS 619 LV+++ Sbjct: 571 LVLAT 575 >gi|162148106|ref|YP_001602567.1| DNA gyrase subunit A [Gluconacetobacter diazotrophicus PAl 5] gi|209542720|ref|YP_002274949.1| DNA gyrase subunit A [Gluconacetobacter diazotrophicus PAl 5] gi|161786683|emb|CAP56266.1| putative DNA gyrase subunit A [Gluconacetobacter diazotrophicus PAl 5] gi|209530397|gb|ACI50334.1| DNA gyrase, A subunit [Gluconacetobacter diazotrophicus PAl 5] Length = 930 Score = 402 bits (1034), Expect = e-110, Method: Compositional matrix adjust. Identities = 228/590 (38%), Positives = 342/590 (57%), Gaps = 46/590 (7%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 V++ + YLAYA+S I RA+PD+RDG KPVHRRI+++M E G ++KSAR V Sbjct: 19 VTIEEEMRSSYLAYAMSVIVSRALPDVRDGLKPVHRRILYSMRESGFTHDKPYRKSARAV 78 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+V+GK HPHGD S+YD++VR+AQ + R LI GQGNFG++DGDS AA RYTEAR+ + Sbjct: 79 GDVMGKYHPHGDSSIYDAMVRMAQFWSMRVKLIDGQGNFGSVDGDSPAAMRYTEARLAKA 138 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A +L +D D VDF+ Y+E + EP + P+ FPNLL NG SGIAVGMAT+IP+HN EI Sbjct: 139 ASFLLDDIDRDTVDFQPNYDESEQEPKILPAAFPNLLINGASGIAVGMATNIPTHNPAEI 198 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 +A LALI NP+++++ L+ + GPDFPTGGII+ I ++ GRG +RAR +E Sbjct: 199 IDATLALIANPDLTLDDLIRIVPGPDFPTGGIIL-GHAGIRSAFETGRGSILIRARAEIE 257 Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319 E+ R IV+TEIPYQV K+ L E+IAEL+ AK+I + DIRDES ++ R Sbjct: 258 ELRRDRSAIVITEIPYQVNKATLQERIAELVRAKQIEGISDIRDESDRSGMRIVIEIKRD 317 Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379 P++++ ++ + ++T F +NM L G+ P++M L +L+ ++ R +V+ RR+ F Sbjct: 318 ATPEVVLNQLYRFTQLQTSFGVNMLALDNGQ-PRLMGLKDVLEAFITFREDVILRRARFD 376 Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAIIRN----------------------------ED 411 + R +L GL+IA NID +IA+IR +D Sbjct: 377 LNKARDRGHLLVGLVIAVANIDAVIALIRAAPDAAHAREALMATAWDAADVEPLLALIQD 436 Query: 412 KPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQ 471 + V + LTE Q IL LRL+ L LE +I+ EL + A ++ +++ S ++ Sbjct: 437 EGNVVTDGKVYLTEAQARGILELRLQRLTGLEREKIQQELSEVAARINELLTIIASRPRR 496 Query: 472 WNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI- 530 ++ CE E+ + +L R T E+++ +++IE + V I+ G+I Sbjct: 497 M-EVMCE-----ELAAIRAELATPRMT--EIAQYAGDQTDESLIEPGQMVVTITREGFIK 548 Query: 531 -------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573 R+ +A + D + + +AHT +L S+ GKAY Sbjct: 549 RTPLDVFRAQNRGGRGRTAAGRRGDDIVVRSFNAHTHQWVLFFSSGGKAY 598 >gi|153831108|ref|ZP_01983775.1| DNA gyrase/topoisomerase IV, A subunit [Vibrio cholerae 623-39] gi|148873414|gb|EDL71549.1| DNA gyrase/topoisomerase IV, A subunit [Vibrio cholerae 623-39] Length = 433 Score = 402 bits (1034), Expect = e-110, Method: Compositional matrix adjust. Identities = 201/431 (46%), Positives = 296/431 (68%), Gaps = 10/431 (2%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 + V+ + LR E+ YL Y++ I +RA+P + DG KPV RRII+AMSE+GL A +KK Sbjct: 8 DGVEQLPLRKFTEDAYLNYSMYVIMDRALPYIGDGLKPVQRRIIYAMSELGLSASAKYKK 67 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTE 133 SAR VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S AA RYTE Sbjct: 68 SARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 127 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 A++++ AE++L + + VD++ ++ EP + P++ P++L NG +GIAVGMAT IP Sbjct: 128 AKLSKFAEILLSELGQGTVDWQPNFDGTMQEPKMLPARLPHILLNGVTGIAVGMATDIPP 187 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HNV+E+ +A + LIDNP + L++Y+ GPDFPT I+ + + YR GRG ++R Sbjct: 188 HNVREVADATIHLIDNPNAPLTDLMQYVKGPDFPTEAEIITPTVELEKIYRSGRGSIKMR 247 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRI 311 A WC E GS IV+T +P+QV ++L+E+IA + AK++P++ED+RDES + RI Sbjct: 248 AVWCKE----GS-DIVITALPHQVSGAKLLEQIAAQMRAKKLPMVEDLRDESDHENPTRI 302 Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371 V+ P++ +D DLLM +F +D+E F +N+N++ + PQV L IL EW++ RRE Sbjct: 303 VIVPRSNRVDCDLLMNHLFASTDLEKSFRVNLNMIGLDNRPQVKGLVQILSEWISFRRET 362 Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431 + R +R+ + R+ IL+GLLIAYLN+DE+I IIRNED PK V+++RF LT+ Q DAI Sbjct: 363 VRSRLQYRLDKVLARLHILQGLLIAYLNLDEVIEIIRNEDDPKAVLMARFDLTDLQADAI 422 Query: 432 LNLR--LRSLR 440 L+ + LR+ R Sbjct: 423 LDTKYALRTER 433 >gi|34497753|ref|NP_901968.1| DNA gyrase subunit A [Chromobacterium violaceum ATCC 12472] gi|34103609|gb|AAQ59970.1| DNA gyrase, subunit A [Chromobacterium violaceum ATCC 12472] Length = 866 Score = 402 bits (1034), Expect = e-110, Method: Compositional matrix adjust. Identities = 250/670 (37%), Positives = 377/670 (56%), Gaps = 84/670 (12%) Query: 9 SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68 ++ L + +SL + YL YA+S I RA+PD+RDG KPVHRR+++AM E+ D+ Sbjct: 2 TDNLFAKETLPISLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELSNDW 61 Query: 69 GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128 A+KKSARIVG+VIGK HPHGD +VYD++VRLAQ F RYPL+ GQGNFG++DGD+AAA Sbjct: 62 NRAYKKSARIVGDVIGKYHPHGDTAVYDTIVRLAQDFSLRYPLVDGQGNFGSVDGDNAAA 121 Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188 RYTE RM ++A +L ++++ VDF Y+ + EP++ P+K PNLL NG+SGIAVGMA Sbjct: 122 MRYTEIRMARIAHELLADIEKETVDFGPNYDGSEHEPLILPAKIPNLLVNGSSGIAVGMA 181 Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248 T+IP HN+ E+ +A LAL+ N +++I++L++ I PDFPT GII + + E YR GRG Sbjct: 182 TNIPPHNLNEVVDACLALLANSDLTIDELIDIIPAPDFPTAGIIYGT-AGVKEGYRTGRG 240 Query: 249 GFRVRARWCVEEVGRGSW-CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307 +RAR E +G+G I+V EIPYQV K+RL+E+I+EL+ K+I + D+RDES + Sbjct: 241 RVIMRARTHTEPIGKGDREAIIVDEIPYQVNKARLLERISELVRDKQIEGISDLRDESDK 300 Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367 V+ R P++++ +F ++ ++ F +NM L G+ P+++ L IL+E+L H Sbjct: 301 SGMRVVIELKRGEMPEVVLNHLFKMTQLQDSFGMNMVALVDGQ-PRLLNLKQILEEFLRH 359 Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV----------- 416 RREV+ RR+ F ++ R IL+GL +A N+DEIIA+I+ + P Sbjct: 360 RREVVTRRTIFELKKARERGHILEGLAVALSNVDEIIALIKASEAPPQAKAALMARAWRS 419 Query: 417 -----MVSR---------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSE 450 M+SR + L++ Q AIL++RL+ L LE+ +I E Sbjct: 420 SLVEDMLSRVEGDKARPENIDPAFGMKEDGYHLSDTQAQAILDMRLQRLTGLEQDKIVGE 479 Query: 451 LDNLLAEKEKIDSLLN-----SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRA 505 +E +D +L+ + ++ +QI E E+ + G R + E Sbjct: 480 Y------REIMDVILDLLDILAKPERISQIIGE-----ELTAIRAQFGDPRRSEIEPYGG 528 Query: 506 DKATLQQAMIEKEPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHA 557 D + +I + + V IS+ G+I+ S + A K+ D ++ A Sbjct: 529 DINI--EDLITPQDMVVTISHTGYIKAQPIDDYSSQRRGGRGKQAAATKDDDFIETLFVA 586 Query: 558 HTTDRILLLSTDG-----KAYTLPAGNLLSGRG----------HGEAIQLLIDLNHNQDI 602 +T D +L S+ G K Y LP G S RG GE I L+ + +D Sbjct: 587 NTHDYVLCFSSRGRCYWRKVYDLPQGGRQS-RGKPMVNVLPLEEGEKINALLPVKEFRD- 644 Query: 603 VTAFVYDSTC 612 FV+ T Sbjct: 645 -DQFVFMCTA 653 >gi|253996361|ref|YP_003048425.1| DNA gyrase subunit A [Methylotenera mobilis JLW8] gi|253983040|gb|ACT47898.1| DNA gyrase, A subunit [Methylotenera mobilis JLW8] Length = 862 Score = 402 bits (1034), Expect = e-110, Method: Compositional matrix adjust. Identities = 258/727 (35%), Positives = 396/727 (54%), Gaps = 73/727 (10%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 +SL + YL YA+S I RA+PD+RDG KPVHRR+++AM E+ D+ +KKSARIV Sbjct: 11 ISLEDEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELSNDYNKPYKKSARIV 70 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGD +VYD++VR+AQ F RY L+ GQGNFG++DGD+AAA RYTE RM ++ Sbjct: 71 GDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAKI 130 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A +L +D++ VDF Y+ + EP++ P++ PNLL NG+SGIAVGMAT+IP HN+ E+ Sbjct: 131 AHELLADIDKETVDFGPNYDGSEHEPLIMPARIPNLLINGSSGIAVGMATNIPPHNLNEV 190 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 +A +L+ NPE ++E+L+E + PDFPT GII + + E YR GRG +R R E Sbjct: 191 LDACFSLLKNPETTVEELIELVPAPDFPTAGIIYGTV-GVKEGYRTGRGRVVMRGRTHFE 249 Query: 260 EVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318 ++ +G I++ E+PYQV K LIEKIAEL+ K+I + D+RDES + V+ R Sbjct: 250 DMDKGGRQSIIIDELPYQVNKKTLIEKIAELVNEKKIEGISDLRDESDKSGMRVVIELKR 309 Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378 PD+++ +++ + ++ F +NM L G+ P+++ L +L+ +L HRREV+ RR+ F Sbjct: 310 GEIPDVVLNNLYKQTQLQDTFGMNMVALLDGQ-PRLLNLKQMLEAFLRHRREVVTRRTVF 368 Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP-------------KPV---MVSR-- 420 ++ R +L+GL +A N+DE+IAII+ P PV M+ R Sbjct: 369 ELRKARERGHVLEGLAVALANVDEMIAIIKAAPTPPEAKKDLMAKSWQSPVVEEMLKRAA 428 Query: 421 ------------FSLTEN-------QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKI 461 F LT N Q IL +RL+ L LE+ +I +E ++ + Sbjct: 429 MEAARPEGLAVNFGLTPNGYKLSDVQAQEILQMRLQRLTGLEQDKIVNEYKEVMDVIADL 488 Query: 462 DSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPIT 521 +L + + I E+ E++ F +RR+ E A +L+ +I + + Sbjct: 489 LDILATAARVTAIITDELTEIRRQFGD-----KRRSEIVE--NAQDLSLED-LIAPQDVV 540 Query: 522 VVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG--- 570 V +S+ G+I R+ K A KE D + A+T D IL S G Sbjct: 541 VTLSHTGYIKSQPLDEYRAQKRGGRGKQAAATKEDDFIDKMFVANTHDYILCFSNRGRVY 600 Query: 571 --KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD---IVTAFVYDSTCKLLVVSSKGNAFI 625 K Y +P G+ S G+ I L L N+ I++ +D + + +S G Sbjct: 601 WLKVYEVPQGSRTS---RGKPIVNLFPLEENEKINAILSVKSFDENHFIFMATSLGTVKK 657 Query: 626 VEESEIIANTRKGKTFLKVSSEEKMKLV---VKVTGDHVAVVGENRKLLIFSIDQIPEMS 682 +E R G + ++ +E L+ + + V +V K + F D++ +M Sbjct: 658 TALTEFANPRRSG--IIAINLDEGDYLIGAEITNGSNDVVLVSNGGKAVWFDEDEVRQMG 715 Query: 683 RG-KGVR 688 R +GVR Sbjct: 716 RATRGVR 722 >gi|149276488|ref|ZP_01882632.1| DNA topoisomerase, ATP-hydrolyzing (DNA gyrase) (DNA topoisomerase II), subunit A [Pedobacter sp. BAL39] gi|149233008|gb|EDM38383.1| DNA topoisomerase, ATP-hydrolyzing (DNA gyrase) (DNA topoisomerase II), subunit A [Pedobacter sp. BAL39] Length = 869 Score = 402 bits (1034), Expect = e-110, Method: Compositional matrix adjust. Identities = 241/652 (36%), Positives = 380/652 (58%), Gaps = 42/652 (6%) Query: 14 EENVKAVSLRF--ALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71 +EN K + + ++ Y+ Y++S I RA+PD+RDG KPVHRR++ M ++GL Sbjct: 8 QENDKIIKINIDEQMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLFGMLDLGLANNKP 67 Query: 72 FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131 +KKSARIVGEV+GK HPHGD SVY+++VR+AQ + RY ++ GQGNFG+IDGD AA RY Sbjct: 68 YKKSARIVGEVLGKYHPHGDASVYNTMVRMAQEWSLRYLMVEGQGNFGSIDGDFPAAMRY 127 Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191 TEAR ++AE +L +++D VDF+ +++ EP V PSK PNLL NG SGIAVGMAT++ Sbjct: 128 TEARFQKIAEDMLADINKDTVDFQLNFDDSLQEPTVLPSKVPNLLINGASGIAVGMATNM 187 Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251 P HN+ E A +A ID+ +I I +L++++ PDFPTG II + E++ GRG Sbjct: 188 PPHNITETINATVAYIDDNDIEIAELMKHVKAPDFPTGAIIY-GYTGVQEAFETGRGRIV 246 Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311 +RA+ + E + I+VTEIPYQV K+ +IE+ AELI K+I + +I+DES +D Sbjct: 247 MRAKAEI-ETNKERETIIVTEIPYQVNKAMMIERTAELIGEKKIEGISNIKDESNKDGIR 305 Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371 +++ R + +++ ++F + ++T F +N L GR PQ++ L +++ ++ HR +V Sbjct: 306 IVYEIKRDANASIVLNNLFKQTALQTSFSVNNIALVNGR-PQLLNLKDLIRHFVDHRHDV 364 Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQV 428 + RR+ F + +R IL+GLLIA ++DE+I +IR + P+ ++ +F L++ Q Sbjct: 365 VVRRTKFELAEAKKRAHILEGLLIALDHLDEVIKLIRASETPEEARTGLMEQFGLSDIQA 424 Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488 AIL++ LR L LE +IK E + L+ E + S+L+S + + I E+ E+KE + Sbjct: 425 RAILDMTLRRLTGLERDKIKDEYNELMKTIEYLQSILDSKELRMQIIKDELNEMKEKYGD 484 Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDL 540 RRTT V A+ +++ IE E + + IS+ G+I R+ Sbjct: 485 E-----RRTTI--VHSAEDMSMED-FIEDEDVVITISHEGYIKRTPATEYRTQGRGGKGS 536 Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKA-----YTLPAGNLLSGRGHGEAIQLLID 595 + D ++ L A + +L + G+ Y +P G+ LS G AIQ +I+ Sbjct: 537 KGSDSRNEDFIEHLLVASNHNYMLFFTESGRCFWLRVYEIPEGSRLS---KGRAIQNIIN 593 Query: 596 LNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE 647 + + I A++ K + +E + II T+KG T K S E Sbjct: 594 IPKEEKI-KAYIKVKNLK--------DQEYLENNYIIMCTKKG-TIKKTSLE 635 >gi|313683205|ref|YP_004060943.1| DNA gyrase subunit a [Sulfuricurvum kujiense DSM 16994] gi|313156065|gb|ADR34743.1| DNA gyrase subunit A [Sulfuricurvum kujiense DSM 16994] Length = 830 Score = 402 bits (1034), Expect = e-110, Method: Compositional matrix adjust. Identities = 252/705 (35%), Positives = 408/705 (57%), Gaps = 48/705 (6%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + +++ L+ YL Y++S I RA+PD+RDG KPVHRRI++AM ++ L GA +KKSA Sbjct: 10 INDINIEDTLKSSYLDYSMSVIIGRALPDVRDGLKPVHRRILYAMDKLSLSAGAKYKKSA 69 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 RIVG+VIG+ HPHGD SVYD+LVR+AQPF R PL+ GQGNFG++DGD+AAA RYTEARM Sbjct: 70 RIVGDVIGQYHPHGDTSVYDALVRMAQPFAMRAPLVDGQGNFGSVDGDNAAAMRYTEARM 129 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 T+ A +L+ +++D VD D Y+ EP V P++ PNLL NG+SGIAVGMAT+IP HN Sbjct: 130 TRYAGELLKDLEKDTVDMVDNYDGTTQEPEVLPTRVPNLLINGSSGIAVGMATNIPPHNP 189 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ A + L+DNP S+ ++++I PDFPTGG I ++ I+++Y GRG RVRA+ Sbjct: 190 NEVLSALVHLVDNPNASLHDIMQFIKAPDFPTGGTIY-GKKGILDAYETGRGRIRVRAKT 248 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFP 315 +E+ IV+ E+PYQV K+RLIE IA+L+ K I + +IRDES E +R+V+ Sbjct: 249 HIEKKSNKD-VIVIDELPYQVNKARLIETIADLVKDKFIEGISEIRDESDREGIRVVIEL 307 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 K ++ ++++ +++ ++MET F + M + + P+V L +L ++ HR+ V+ RR Sbjct: 308 KRDAM-SEIVLNNLYKSTNMETTFGIIM-LSVFNQEPRVFTLLEMLGHFINHRKTVIIRR 365 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432 + F ++ R IL+GL A +I+ II +IR + + K ++ F + Q AIL Sbjct: 366 TIFDLEKAKARAHILEGLKKALDHIEAIIKLIRASADGETAKNGLIEEFGFSPIQAQAIL 425 Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS--KST 490 ++RL+ L LE +I++EL +L E ++S+L S + I E E+ E ++ + T Sbjct: 426 DMRLQRLTGLERDKIENELKEILTHIEYLESILRSEEVLKGIIKEEFVELVEQYNIPRVT 485 Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS--------A 542 D+ + +++ D +I EP+ V IS+RG+I+ + + + A Sbjct: 486 DI---EDNYDDINIED-------LIPNEPMVVTISHRGYIKRVPLAAYEKQIRGGKGKVA 535 Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDLN 597 + + D ++ +T D ++ ++ G K Y +P G S G+A+ LI+L Sbjct: 536 VTTYDDDFIEKFYTCNTHDTLMFVTDRGQLHWLKVYKIPEG---SRTAKGKAVVNLINLE 592 Query: 598 HNQ---DIVTAFVYDSTCKLLVVSSKGNAFIVEESEI--IANTRKGKTFLKVSSEEKMKL 652 ++ I+ +D L+ + G IV+ + + +N R V E+ + Sbjct: 593 ADEKIRSIIPTTDFDEKKSLVFFTQNG---IVKRTALNEFSNIRSNGVRAIVLDEDDALI 649 Query: 653 VVKVTGD---HVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYK 693 + + ++ +V + + + F ID+ + R +GVR +K Sbjct: 650 TAHIATEETKYLFIVTKFAQCIKFEIDKTRDQGRSTRGVRGIKFK 694 >gi|291614526|ref|YP_003524683.1| DNA gyrase, A subunit [Sideroxydans lithotrophicus ES-1] gi|291584638|gb|ADE12296.1| DNA gyrase, A subunit [Sideroxydans lithotrophicus ES-1] Length = 849 Score = 402 bits (1034), Expect = e-110, Method: Compositional matrix adjust. Identities = 272/752 (36%), Positives = 400/752 (53%), Gaps = 87/752 (11%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 VSL + + YL YA+S I RA+PD+RDG KPVHRR++ AM E+ D+ A+KKSARIV Sbjct: 12 VSLEEEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELSNDWNRAYKKSARIV 71 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGD +VYD++VR+AQ F RY L+ GQGNFG++DGD+AAA RYTE RM ++ Sbjct: 72 GDVIGKYHPHGDTAVYDTIVRMAQDFSLRYTLVDGQGNFGSVDGDNAAAMRYTEIRMAKI 131 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A +L +D++ VDF Y+ + EP+VFP++FPNLL NG+SGIAVGMAT+IP HN+ E+ Sbjct: 132 AHELLADLDKETVDFGPNYDGSEHEPLVFPARFPNLLVNGSSGIAVGMATNIPPHNMTEV 191 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 +A LAL+ NP++ IE+L+E + PDFPT G I + E YR GRG +RAR E Sbjct: 192 VDACLALLKNPDMDIEQLIELVPAPDFPTAGFIY-GLAGVKEGYRTGRGRVVMRARTHFE 250 Query: 260 EVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318 ++G+G I++ E+PYQV K+ L+ KI E++ KRI + +IRDES + + R Sbjct: 251 DIGKGDRQAIIIDELPYQVNKANLLMKIGEMVREKRIEGVSEIRDESDKSGMRAVIELKR 310 Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378 + D+++ ++ + M+ F +NM + G+ P++ L +++ +L HRREV+ RR+ F Sbjct: 311 GENADVILNQLYKDTQMQDSFGINMVAIVDGQ-PKLCNLKDVIEAFLRHRREVVTRRTIF 369 Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV----------------MVSR-- 420 ++ R IL+GL +A N+DEIIA+I+ P M+SR Sbjct: 370 ELRKARERGHILEGLAVALSNVDEIIALIKAAPTPPDAKRELMARGWRSSLVEDMLSRVD 429 Query: 421 -------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKI 461 + L++ Q AIL LRL+ L LE+ +I E ++ +KI Sbjct: 430 EASRPEGLAPEFGLVKGTGYFLSDAQAQAILELRLQRLTGLEQDKIVGEYREVM---DKI 486 Query: 462 DSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAM-----IE 516 LL+ I + V +I +L R+ F + R++ T Q M I Sbjct: 487 TDLLD--------ILAKPARVTQIIGD--ELITIRSQFGDKRRSEIVTHTQDMSMEDLIA 536 Query: 517 KEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568 E + V +S+ G++ R+ K A KE D + A+T D IL S Sbjct: 537 PEDVVVTMSHGGYMKAQKLDEYRAQKRGGRGKQATATKEDDFIDNLFIANTHDYILCFSN 596 Query: 569 DG-----KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI-----VTAFVYDSTCKLLVVS 618 G K Y +P G +S G+ I L+ L + I V F D + + Sbjct: 597 RGRVYWLKVYDVPQGTRIS---RGKPIVNLLPLEAGEKINAILPVKQFAEDQF--IFFAT 651 Query: 619 SKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT-GDH-VAVVGENRKLLIFSID 676 S+G S+ AN RK E + V +T G H V + + + + F D Sbjct: 652 SEGTVKKTPLSD-FANPRKAGIIAISLDEGDFLIGVAITDGKHDVMLFSDEGRAVRFDED 710 Query: 677 QIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707 + M R +GVR + GG VI + E Sbjct: 711 DVRGMGRTARGVRGMNLAKGG--KVIALLVAE 740 >gi|24379546|ref|NP_721501.1| DNA gyrase subunit A [Streptococcus mutans UA159] gi|24377489|gb|AAN58807.1|AE014948_10 DNA gyrase A subunit [Streptococcus mutans UA159] Length = 825 Score = 402 bits (1034), Expect = e-110, Method: Compositional matrix adjust. Identities = 236/640 (36%), Positives = 379/640 (59%), Gaps = 43/640 (6%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 + N+ V+L ++ ++ YA+S I RA+PD+RDG KPVHRRI++ M+E+G+ K Sbjct: 8 DRNLVDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHK 67 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSARI G+V+GK HPHGD S+Y+++VR+AQ + R+ L+ G GNFG++DGD AAA RYTE Sbjct: 68 KSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTE 127 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 ARM+++A +L+ ++++ VDF D Y+ + EP+V PS+FPNLL NG +GIAVGMAT+IP Sbjct: 128 ARMSKIAMEMLRDINKNTVDFADNYDGSEREPLVLPSRFPNLLVNGATGIAVGMATNIPP 187 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E +A ++DNP+++ L+E + GPDFPTG +++ + I +Y G+G +R Sbjct: 188 HNLGETIDAVKLVMDNPDVTTRDLMEVLPGPDFPTGALVM-GKSGIHRAYDTGKGSIVLR 246 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312 AR +E+ G IVVTE PY V K+++ E I L KRI + +RDES+ E VR + Sbjct: 247 ARTEIEQTKSGRERIVVTEFPYMVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGVRFI 306 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 + + R ++++ ++F L+ ++T F NM + G VP+++ L IL ++ H++EV+ Sbjct: 307 IEVR-RDASANVILNNLFKLTSLQTNFSFNMLAIEKG-VPKILSLRQILDNYIDHQKEVI 364 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVD 429 RR+ F + R IL+GLLIA ++DE+I IIRN + + ++SRF L+E Q Sbjct: 365 VRRTKFDKAKAESRAHILEGLLIALDHLDEVITIIRNSETDTIAQAELMSRFDLSERQSQ 424 Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489 AIL++RLR L LE +I+SE ++LLA + +L ++ I E+ ++K F+ Sbjct: 425 AILDMRLRRLTGLERDKIQSEYNDLLALIADLADILAKPERVITIIKDELEDIKRKFAD- 483 Query: 490 TDLGRRRTTFC--EVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSVD 539 +RRT EV + + +IE+E + + +SN+G+I+ L K Sbjct: 484 ----QRRTELMVGEVL----SLEDEDLIEEEDVLITLSNKGYIKRLGQDEFRTQKRGGRG 535 Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLLSGR 584 + + D ++ + T D +L + G+ Y LP NLL Sbjct: 536 VQGTGVNDDDFVRELVSTSTHDAMLFFTNQGRVYRLKGYEIPEYGRTAKGLPIVNLLK-L 594 Query: 585 GHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAF 624 GE IQ +I++ + D +++ +T + +V + +AF Sbjct: 595 DDGETIQTIINVKSD-DFHDKYLFFTTRQGVVKRTSVSAF 633 >gi|229589164|ref|YP_002871283.1| DNA gyrase subunit A [Pseudomonas fluorescens SBW25] gi|229361030|emb|CAY47892.1| DNA gyrase subunit A [Pseudomonas fluorescens SBW25] Length = 884 Score = 402 bits (1034), Expect = e-109, Method: Compositional matrix adjust. Identities = 248/664 (37%), Positives = 381/664 (57%), Gaps = 69/664 (10%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 V++ L++ YL YA+S I RA+PD RDG KPVHRR++ AMSE+G D+ +KKSAR+V Sbjct: 11 VNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDWNKPYKKSARVV 70 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG++DGD+AAA RYTE RMT++ Sbjct: 71 GDVIGKYHPHGDTAVYDTIVRMAQPFSLRYLLVDGQGNFGSVDGDNAAAMRYTEVRMTKL 130 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A +L + ++ VD+ Y+ + P V P+K PNLL NG+SGIAVGMAT+IP HN+ E+ Sbjct: 131 AHELLADLHKETVDWVPNYDGTEMIPAVMPTKIPNLLVNGSSGIAVGMATNIPPHNLGEV 190 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 + LALIDNPE+++++L++YI GPDFPT II R I+E+YR GRG +RAR +E Sbjct: 191 IDGCLALIDNPELTVDELMQYIPGPDFPTAAII-NGRAGIIEAYRTGRGRIYMRARSMIE 249 Query: 260 EVGR--GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317 ++ + G IV+TE+PYQ+ K+RLIEKIAEL+ K++ + ++RDES +D V+ Sbjct: 250 DIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKLEGITELRDESDKDGMRVVIELR 309 Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377 R P++++ +++ + +++ F +N+ L GR P+++ L +L+ ++ HRREV+ RR+ Sbjct: 310 RGEVPEVILNNLYAQTQLQSVFGINVVALIDGR-PRILNLKDLLEAFVRHRREVVTRRTV 368 Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP----------------VMVSR- 420 F ++ R IL+G +A NID +IA+I+ P MV R Sbjct: 369 FELRKARERGHILEGQAVALSNIDPVIALIKASPTPSEAKEALIKMPWESSAVVAMVERA 428 Query: 421 --------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEK 460 + L+ Q AIL LRL L LE ++ +E +L + + Sbjct: 429 GADSCRPETLDPQYGLRDGKYFLSPEQAQAILELRLHRLTGLEHEKLLAEYQEILNQIGE 488 Query: 461 IDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI 520 + +L+S + I E+ ++ + RRT + +R D TL MI +E Sbjct: 489 LIRILSSAVRLMEVIREELEVIRAEYGDV-----RRTEILD-ARLD-LTLGD-MIPEEER 540 Query: 521 TVVISNRGWIRS--LKSHSVDL------SALHFKEGDSLKIALHAHTTDRILLLSTDGKA 572 V IS+ G+ ++ L ++ SA K+ D + L A++ +LL S+ GK Sbjct: 541 VVTISHGGYAKTQPLAAYQAQRRGGKGKSATGVKDEDYIAHLLVANSHTTLLLFSSKGKV 600 Query: 573 YTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTA----------FVYDSTCKLLVVSSK 620 Y L + S G + L+ L+ ++ I T F++ +T K V + Sbjct: 601 YWLKTYEIPEASRAARGRPLVNLLPLDSDEYITTMLPVEEYTEGHFIFMATAKGTVKKTP 660 Query: 621 GNAF 624 +F Sbjct: 661 LESF 664 >gi|88602336|ref|YP_502514.1| DNA gyrase, A subunit [Methanospirillum hungatei JF-1] gi|88187798|gb|ABD40795.1| DNA gyrase subunit A [Methanospirillum hungatei JF-1] Length = 839 Score = 402 bits (1034), Expect = e-109, Method: Compositional matrix adjust. Identities = 246/730 (33%), Positives = 424/730 (58%), Gaps = 38/730 (5%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 V V++ ++ Y+ YA+S I RAIPD+RDG KPVHRR + AM EMG +KKSA Sbjct: 15 VNPVNIEEEMKSSYIDYAMSVIIGRAIPDVRDGLKPVHRRSLFAMWEMGNTHDKPYKKSA 74 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+V+GK HPHGD S+YD++V++AQPF R L+ GQGNFG++DGD+ AA RYTE R+ Sbjct: 75 RVVGDVMGKYHPHGDASIYDTIVKMAQPFSYRMMLVDGQGNFGSVDGDAPAAMRYTEVRL 134 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 + AE +L ++++ V+F ++E EP V P+K PNLL NG+ GIAVG+AT +P HN+ Sbjct: 135 KREAEELLTDLEKETVEFVPNFDESLQEPSVLPAKLPNLLINGSDGIAVGIATKMPPHNL 194 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+C+A +++P+ ++ +L++ + GPDFPTGGII+ + + I +Y G+G VR Sbjct: 195 GEVCDAVCHYLEHPDTTVYELMQIMPGPDFPTGGIIMGT-DGIQNAYLSGQGKLTVRGVA 253 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316 ++E G+ + I++TEIPYQV K++LIE IAEL+ KRI + D+RDES +D ++ Sbjct: 254 EIDESGKRNQ-IIITEIPYQVNKAKLIEHIAELVKEKRIEGISDLRDESDKDGMRIVIDL 312 Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376 + P L++ ++ + +E+ F + +N + R P+++ L ++++++ HR V+ RRS Sbjct: 313 RKDARPQLILNHLYKHTALESTFGI-INYAIVDRQPKILGLIPLIEQFVRHRITVITRRS 371 Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAILN 433 F + + RV IL+GLL A NID +I IR D+ K ++++FSL E Q AIL Sbjct: 372 EFDKRKAEERVHILRGLLHAIDNIDAVITTIRAAQTADEAKEALIAKFSLDEAQAGAILQ 431 Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493 ++LR L LE+ ++ E + L AE K+ LL+S +I+ E++E++E ++ Sbjct: 432 MQLRRLAALEKQKLIDEREQLEAEIRKLIELLSSEDNIRAEISRELQELREKYAD----- 486 Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS--------ALHF 545 +RRT +++ + +++ +I + + V ++++ +++ + + + + Sbjct: 487 KRRT---QITGDLQEIVREDLIPNKQVLVCLTHQNYVKHMDVDAYRVQGRGGRGVMGISI 543 Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQDIV 603 K+GD ++ A+T D +L ++ G+AY L ++ G + G+AI L+DL +++ V Sbjct: 544 KDGDYVEQVFVANTHDHLLCFTSTGRAYWLRVFDIPEGSRQSKGKAIVNLLDLR-SEERV 602 Query: 604 TAFV----YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD 659 TA + + S L ++ +G + + E G + + + + V+ G Sbjct: 603 TAVIPVQEFSSDRFFLFLTERGMIIKIPQDEFSRPRSTGVNAISLREGDNLVHVMVSDGS 662 Query: 660 H-VAVVGENRKLLIFSIDQIPEMSRGK----GVRLQSYKDGGISDVICFKICEGLTWIDS 714 + + + + L F +QIP R G+R++ D ++ + + + L I S Sbjct: 663 QEIIITTKYGQSLRFHEEQIPLRHRNALGVIGMRMKD--DDIVTSMTVIEEGKHLLTITS 720 Query: 715 AGRSYNRSEN 724 +G Y + N Sbjct: 721 SG--YGKRTN 728 >gi|294677501|ref|YP_003578116.1| DNA gyrase subunit A [Rhodobacter capsulatus SB 1003] gi|294476321|gb|ADE85709.1| DNA gyrase, A subunit [Rhodobacter capsulatus SB 1003] Length = 913 Score = 402 bits (1033), Expect = e-109, Method: Compositional matrix adjust. Identities = 236/611 (38%), Positives = 358/611 (58%), Gaps = 51/611 (8%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 VS+ ++ YL YA+S I RAIPDLRDG KP HRRI++AM E G ++KSAR V Sbjct: 25 VSIAEEMKTAYLDYAMSVIVSRAIPDLRDGLKPAHRRILYAMHETGNTHDKPYRKSARPV 84 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+V+GK HPHGD ++YD+LVR+AQ F PL+ GQGNFG++DGDSAAA RYTE RM + Sbjct: 85 GDVMGKYHPHGDAAIYDALVRMAQDFSMSLPLLDGQGNFGSMDGDSAAAMRYTEVRMDKP 144 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A +L +++D VDF+D Y+ +D EP V P++FPN+L NG GIAVGMAT+IP HN+ E+ Sbjct: 145 AAFLLADIEKDTVDFQDNYDGKDKEPTVLPARFPNMLVNGAGGIAVGMATNIPPHNLGEV 204 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 +A LALI+NP++S E L++Y+ GPDFPTG I+ R ++Y GRG +RA+ +E Sbjct: 205 IDATLALIENPDLSSEALMDYVPGPDFPTGAQIM-GRGGARKAYLEGRGSVIIRAKTRIE 263 Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE-DVRIVLFPKNR 318 E+ + + I++ EIPYQV K+ +IEK+A+L+ K++ + I DES VR+V+ K R Sbjct: 264 EIRKDRFAIIIDEIPYQVNKATMIEKMADLVREKKLEGIASIADESDRVGVRVVIELK-R 322 Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378 D+++ ++ + ++T F NM L+ GR P+ + L L ++A R EV+ RR+++ Sbjct: 323 DATADVVLNQLYRFTPLQTSFGCNMLALNGGR-PEQLTLRDFLSHFIAFREEVVARRTAY 381 Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP----VMVSR-------------- 420 ++ R IL GL +A N+DE++A IR+ P +M R Sbjct: 382 ELRKARERSHILCGLAVAVSNVDEVVATIRSSKDPAEARDRLMERRWPAHEIVEYLRLID 441 Query: 421 -----------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGK 469 ++L+E Q AIL+LRL+ L + ++ EL L + ++L S + Sbjct: 442 DPLHPVNDDGTYNLSEVQARAILDLRLQRLTAMGVQEVTDELAELAGKIRDYLAILASRE 501 Query: 470 QQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW 529 + IA E+REV+ + RRT + + + +IE+E + V I++ G+ Sbjct: 502 RIMAIIATELREVRAAHAVP-----RRTEIVDWA---GDLDDEDLIEREDMVVTITSGGY 553 Query: 530 I--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL- 580 I R+ + L+++ KE D + A+T ++L +TDG Y+L L Sbjct: 554 IKRTPLAEFRAQRRGGKGLASMATKEDDVVTTLFVANTHTQLLFFTTDGMVYSLKCWRLP 613 Query: 581 LSGR-GHGEAI 590 L+GR G+AI Sbjct: 614 LAGRTSKGKAI 624 >gi|260913652|ref|ZP_05920128.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Pasteurella dagmatis ATCC 43325] gi|260632191|gb|EEX50366.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Pasteurella dagmatis ATCC 43325] Length = 901 Score = 402 bits (1033), Expect = e-109, Method: Compositional matrix adjust. Identities = 249/661 (37%), Positives = 376/661 (56%), Gaps = 69/661 (10%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 +++ +S+ L+ YL YA+S I RA+PD+RDG KPVHRR++ AM E G + ++K Sbjct: 17 QDISPISIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEGGNAYNKPYRK 76 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 SARIVG+VIGK HPHGD +VYD+LVR+AQPF RY L+ GQGNFG+IDGD+AAA RYTEA Sbjct: 77 SARIVGDVIGKYHPHGDSAVYDTLVRMAQPFSLRYMLVDGQGNFGSIDGDAAAAMRYTEA 136 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 RMT++A +L +D++ V+F Y+ + P V P+K P LL NG+SGIAVGMAT+IP H Sbjct: 137 RMTKIAHELLADLDKETVNFVPNYDGSEQIPEVLPTKVPALLVNGSSGIAVGMATNIPPH 196 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 N+ E+ + LA I+N EI+I++L+ YI GPDFPT +I R+ I E+Y+ GRG VRA Sbjct: 197 NLGEVLDGCLAYIENNEITIDELMTYIPGPDFPTAALI-NGRKGIEEAYKTGRGKIYVRA 255 Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314 + VE +G IVV EIPYQV K++LIEKIA+L+ K+I + I D S +D + Sbjct: 256 KAEVETDEKGGETIVVHEIPYQVNKAKLIEKIADLVKEKKIEGISAITDLSDKDGMRIEI 315 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 R ++++ +++ L+ ++ F +N+ L G+ P+++ L +++ ++ HRREV+ R Sbjct: 316 KIKRDAVGEVVLNNLYALTQLQVTFGINIVALDKGQ-PKLLNLKQLIEAFVLHRREVVTR 374 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR-------------- 420 R+ + ++ R IL+GL IA N+D II +IR P P R Sbjct: 375 RTVYELRKARERAHILEGLAIALANVDPIIELIRQ--APNPETAKRELIAQPWKLGHVAD 432 Query: 421 -------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLL 455 + LTE Q AIL+LRL+ L L +I E LL Sbjct: 433 MLAAAGVDAARPEELEEQYGIRDGMYYLTEVQAQAILDLRLQKLTNLGHDEILDEYQKLL 492 Query: 456 AEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMI 515 ++ +L S ++ I E+ +++E F+ RRT E++ + + +I Sbjct: 493 EVIGELLYILRSPERLMEVIREELEQIREQFNDP-----RRT---EITASSGDINLEDLI 544 Query: 516 EKEPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567 +E + V +S+ G+++ + + SA KE D ++ L A+T D IL S Sbjct: 545 AQEDVVVTLSHEGYVKYQPLTDYEAQRRGGKGKSAAKTKEEDFIERLLVANTHDTILCFS 604 Query: 568 TDGKAYTLPAGNL-LSGRG-HGEAIQLLIDLNHNQDI-----VTAFVYDSTCKLLVVSSK 620 + G+ Y L L + RG G I ++ L+ N+ I VTA+ D K +V+++ Sbjct: 605 SRGRLYWLKVYQLPQASRGSRGRPIVNILPLDENERITAILPVTAYEED---KFVVMATA 661 Query: 621 G 621 G Sbjct: 662 G 662 >gi|84686892|ref|ZP_01014776.1| DNA gyrase subunit A [Maritimibacter alkaliphilus HTCC2654] gi|84665089|gb|EAQ11569.1| DNA gyrase subunit A [Rhodobacterales bacterium HTCC2654] Length = 917 Score = 402 bits (1033), Expect = e-109, Method: Compositional matrix adjust. Identities = 243/677 (35%), Positives = 376/677 (55%), Gaps = 57/677 (8%) Query: 19 AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78 ++++ + YL YA+S I RAIPDLRDG KPVHRRI++AM E+G ++KS+R Sbjct: 25 SITIEQEMRNSYLDYAMSVIVSRAIPDLRDGLKPVHRRILYAMHEVGNTHDKPYRKSSRP 84 Query: 79 VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138 V + +G+ HPHGD ++YD+L R+ Q F PL+ GQGNFG++DGD AA+RYTE RM + Sbjct: 85 VADTMGQYHPHGDAAIYDALARMTQDFSMSLPLLDGQGNFGSMDGDKPAAFRYTEVRMEK 144 Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198 A+ +L+ +D+D VDF+D Y+ + EP+V P++FPN+L NG GIAVGMAT+IP HN+ E Sbjct: 145 AAQALLEDIDKDTVDFQDNYDGKQREPMVLPARFPNMLVNGAGGIAVGMATNIPPHNLGE 204 Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258 + +A LA+I++P+IS E+L+E I GPDFPTGG+I+ R ++Y GRG +RA+ V Sbjct: 205 VVDATLAMIESPDISDERLMEIIPGPDFPTGGVIL-GRSGARKAYLEGRGSVILRAKTRV 263 Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE-DVRIVLFPKN 317 EE+ + + IVV E+P+QV K+ +IEKIA+L+ K++ + I+DES VR+V+ K Sbjct: 264 EEIRKDRYAIVVDEVPFQVNKAMMIEKIADLVRDKKLEGIAAIQDESDRLGVRVVIELK- 322 Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377 R P++++ +F + ++T F NM L+ G+ P+ + L L+ ++ R EV+ RR++ Sbjct: 323 RDATPEVVLNQLFRFTQLQTSFGCNMLALNGGK-PEQLTLRDFLRHFITFREEVVARRTA 381 Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE--------------------------- 410 F ++ R IL GL +A N+DE++A IR Sbjct: 382 FLLRKARDRSHILCGLAVAVSNVDEVVATIRASADAAEAREKLMTRRWPAEDIADYIRLV 441 Query: 411 DKPKPVMV--SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSG 468 D P M ++L+E Q AIL LRL+ L ++ ++ EL L + + +L S Sbjct: 442 DDPTHTMNDDGTYNLSETQARAILELRLQRLTQIGVKEVTDELQELAGKIREYLDILRSR 501 Query: 469 KQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRG 528 + I+ E+ VK+ F+ RR+ E S + +IE+E + V I+ G Sbjct: 502 DRIMAIISDELTAVKDEFAVP-----RRSEIVEWS---GDMDDEDLIEREDMVVTITQSG 553 Query: 529 W--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL 580 W R K LS + K+ D + A+T ++L +TDG AY L L Sbjct: 554 WAKRTPLAEYREQKRGGKGLSGMATKDEDVITTLFVANTHTQLLFFTTDGMAYKLKTWRL 613 Query: 581 -LSGR-GHGEAIQLLIDLNHNQDIVTAFVYD------STCKLLVVSSKGNAFIVEESEII 632 L GR G+AI ++ + I D +++ +SKG+ S+ Sbjct: 614 PLGGRTSRGKAIVNILPIPTGVGIAAIMPVDRDEADWDDLQIVFATSKGSVRRNRLSDFT 673 Query: 633 ANTRKGKTFLKVSSEEK 649 R GK +K E++ Sbjct: 674 NVMRNGKIAMKFEGEDE 690 >gi|83588882|ref|YP_428891.1| DNA gyrase, A subunit [Moorella thermoacetica ATCC 39073] gi|83571796|gb|ABC18348.1| DNA gyrase, A subunit [Moorella thermoacetica ATCC 39073] Length = 814 Score = 402 bits (1033), Expect = e-109, Method: Compositional matrix adjust. Identities = 249/692 (35%), Positives = 392/692 (56%), Gaps = 30/692 (4%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 + V L ++ Y+ YA+S I RA+PD+RDG KPVHRRI++AM E GL +KKS Sbjct: 16 KIMPVILEEEMKRSYIDYAMSVIVGRALPDVRDGLKPVHRRILYAMYEEGLTPDKPYKKS 75 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 A +VG V+ + HPHGD +VY+++VRLAQ F RYPLI G GNFG++DGDS AA RYTEAR Sbjct: 76 AVVVGTVLARYHPHGDAAVYETMVRLAQDFACRYPLIDGHGNFGSVDGDSPAAMRYTEAR 135 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 ++++A +L +D+D VDF D Y+ EPVV P++ P LL NG++GIAVGMAT+IP HN Sbjct: 136 LSKLALTMLADIDKDTVDFVDNYDGSLKEPVVLPARIPQLLVNGSAGIAVGMATNIPPHN 195 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 + E+ +A + LID P+ ++++ + I GPDFPT G+I+ RE I +YR GRG +VRA+ Sbjct: 196 LGEVIDALVLLIDKPDADLKEITKIIKGPDFPTAGLII-GREGIRNAYRTGRGSIKVRAK 254 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315 VE + G IVVTEIPYQV K+RL++ I +L+ K+I + D+RDES ++ Sbjct: 255 AQVETLSNGKSQIVVTEIPYQVNKARLVQSIGDLVREKKIDGIVDLRDESDRTGMRIVIE 314 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 R + P +++ ++ + M+ F + M L GR P+V+ L +L +L H++EV+ RR Sbjct: 315 LRRDVQPKVILNQLYKHTQMQENFGVIMLALVDGR-PRVLNLREMLTLYLDHQKEVITRR 373 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432 + + + + R I+ GL IA +DE+I IIR NE + ++ RF L++ Q AI+ Sbjct: 374 TRYLLAQAEARAHIVAGLRIAIQFLDEVIRIIRQAPNEPEACRGLMERFQLSDKQAKAIV 433 Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492 ++RL L LE +++ E L +L S + + + E+ E+K F+ Sbjct: 434 DMRLGRLTALEREKLEEEWQELQKRIAYYQEVLASEARVYAIVRDELLEIKRKFADP--- 490 Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALH 544 RRT ++ ++ + +I +E I V +++RG+I RS K + A+ Sbjct: 491 --RRT---QIVLEEENLELEDLIAREDIVVTLTHRGYIKRQPVDTYRSQKRGGRGIQAMG 545 Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEAIQLLIDLNHNQDI 602 +E D ++ T +L + G+ + L + +GR G + L+ LN + I Sbjct: 546 TREEDIVRDIFVTTTHHYLLFFTNQGRVFRLRGHEIPEAGRQARGTPLVNLLYLNKGETI 605 Query: 603 VTAFV----YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG 658 TA + + LL+ + KG E + R G + + ++ + V++ G Sbjct: 606 -TAVIPIRELEEDSYLLMATRKGIVKKTSLGEYHTSRRDGLLAINLDEDDDLVGVLRTEG 664 Query: 659 DH-VAVVGENRKLLIFSIDQIPEMSR-GKGVR 688 ++ V +V K + F D++ M R +GVR Sbjct: 665 NNEVMLVTRRGKAIRFGEDEVRPMGRAARGVR 696 >gi|254492429|ref|ZP_05105601.1| DNA gyrase, A subunit [Methylophaga thiooxidans DMS010] gi|224462321|gb|EEF78598.1| DNA gyrase, A subunit [Methylophaga thiooxydans DMS010] Length = 859 Score = 402 bits (1033), Expect = e-109, Method: Compositional matrix adjust. Identities = 241/612 (39%), Positives = 359/612 (58%), Gaps = 63/612 (10%) Query: 19 AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78 ++ + +++ YL YA+S I RA+PD+RDG KPVHRR+++AM E+G + + +KKSARI Sbjct: 10 SIGIETEMKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMRELGNSWNSPYKKSARI 69 Query: 79 VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138 VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG++DGDS AA RYTE RM + Sbjct: 70 VGDVIGKYHPHGDTAVYDTMVRMAQPFSMRYMLVDGQGNFGSVDGDSPAAMRYTEVRMAK 129 Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198 + +L ++++ VDF Y+E + EP V P+K P LL NG+SGIAVGMAT+IP HN+ E Sbjct: 130 ITHEMLADLEKETVDFIANYDESEHEPSVLPTKIPALLVNGSSGIAVGMATNIPPHNLTE 189 Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258 + AA+A+IDNPEI I +L+E+I GPDFPT II +R I E+Y GRG +RAR + Sbjct: 190 VLNAAIAMIDNPEIGIPELMEHIPGPDFPTSAIINGAR-GIAEAYATGRGRVHIRARADI 248 Query: 259 E-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPK 316 E G IVV E+PYQV K+RL+EKIAEL+ K+I + +RDES +D +R+V+ + Sbjct: 249 ETNDATGQQSIVVNELPYQVNKARLLEKIAELVKEKKIDGITALRDESDKDGMRMVIVLR 308 Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376 R P++++ +++ + M+T F +NM + G+ P+ + L +L ++ HRREV+ RRS Sbjct: 309 -RGEVPEVVLNNLYQQTQMQTVFGINMVAIVDGQ-PRTLNLKDVLAAFIRHRREVVTRRS 366 Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR------------- 420 F ++ R IL+GL A NIDE+I +I+ P K ++SR Sbjct: 367 IFDLRKARDRAHILEGLATALANIDEVIELIKASPNPAEAKEALLSRGWASEMILEMLGE 426 Query: 421 ---------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKE 459 + L+ Q AIL++RL L LE+ +I E +L + Sbjct: 427 AGAEASRPEDLEAEFGLVDKLYHLSPAQAQAILDMRLHRLTGLEQDKILQEYREVL---D 483 Query: 460 KIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEP 519 I LL N +A IR+ E+ + + + G R T + D TL+ +I +E Sbjct: 484 LIGELLAILSDPDNLMAV-IRD--ELVAINAEYGDERRTEILANHLD-LTLED-LITEEE 538 Query: 520 ITVVISNRGWIRSLKSHSVDL--------SALHFKEGDSLKIALHAHTTDRILLLSTDG- 570 + V +S+ G+ ++ + + +A K+ D ++ A+T D +L S+ G Sbjct: 539 MVVTLSHAGYAKTQQLDTYQAQKRGGKGKAATSMKDEDFIEHLFIANTHDTLLCFSSTGK 598 Query: 571 ----KAYTLPAG 578 K Y LP G Sbjct: 599 VYWKKVYELPQG 610 >gi|166032885|ref|ZP_02235714.1| hypothetical protein DORFOR_02606 [Dorea formicigenerans ATCC 27755] gi|166027242|gb|EDR45999.1| hypothetical protein DORFOR_02606 [Dorea formicigenerans ATCC 27755] Length = 846 Score = 402 bits (1033), Expect = e-109, Method: Compositional matrix adjust. Identities = 235/633 (37%), Positives = 371/633 (58%), Gaps = 41/633 (6%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 + V V L+ +E Y+ YA+S I RA+PD+RDG KPV RRI+++M E+ +K Sbjct: 7 DKVHEVDLKKTMETSYIDYAMSVIASRALPDVRDGLKPVQRRILYSMIELNNGPDKPHRK 66 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 SARIVG+ +GK HPHGD S+Y +LV +AQ + RYPL+ G GNFG++DGD AAA RYTEA Sbjct: 67 SARIVGDTMGKYHPHGDSSIYGALVNMAQEWSTRYPLVDGHGNFGSVDGDGAAAMRYTEA 126 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 R+++++ + +++D VDF ++E + EPVV P++FPNLL NGTSGIAVGMAT+IP H Sbjct: 127 RLSKISMELTADINKDTVDFMPNFDETEKEPVVLPARFPNLLVNGTSGIAVGMATNIPPH 186 Query: 195 NVQEICEAALALIDNP-----EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249 N++E+ +A + +IDN E ++E++LE I GPDFPTGG I+ +R I E+YR GRG Sbjct: 187 NLREVIDAVVRIIDNKIADKDETTMEEILEIIKGPDFPTGGEILGTR-GIEEAYRTGRGK 245 Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-ED 308 RVRA +E + G I+VTE+PY V K+RLIEKIAEL+ K++ + D+ D+S+ E Sbjct: 246 IRVRAVTNIETMPNGKSRIIVTELPYMVNKARLIEKIAELVRDKKVDGITDLSDQSSREG 305 Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368 +RIV+ + + ++ ++L+ ++ + ++ F + M L +G+ P+VM + +L +L H+ Sbjct: 306 MRIVIELR-KDVNANVLLNQLYKHTQLQDTFGVIMLAL-VGKQPKVMNILELLGYYLKHQ 363 Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTE 425 +V+ RR+ + + R ILKGLLIA NIDE+I IIR K ++ +F L + Sbjct: 364 EDVVTRRTKYELNKAKERAHILKGLLIALDNIDEVIRIIRGSSTVQAAKAELMEKFELDD 423 Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485 Q AI+++RLR+L LE +++ E L+A+ E+++++L K I EI +K+ Sbjct: 424 VQAQAIVDMRLRALTGLEREKLEKEYAELMAQIERLEAILADEKLLLGVIREEILVIKDK 483 Query: 486 FSKSTDLGRRRTTF----CEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD-- 539 + RRT+ ++S D +I KE I + ++ G+I+ + + Sbjct: 484 YGDD-----RRTSIGFDEYDISMED-------LIPKENIVITMTKLGYIKRMSDDTFKAQ 531 Query: 540 ------LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQ 591 + + + D ++ +T I+ + G+ Y L + S G AI Sbjct: 532 NRGGKGIKGMQTLDEDYVEELFMTNTHHYIMFFTNTGRVYRLKGYEIPEASRTSRGTAII 591 Query: 592 LLIDLNHNQDIVTAF---VYDSTCKLLVVSSKG 621 L+ L + I Y L++ + KG Sbjct: 592 NLLQLMPGEKITAVIPIDYYRDQDYLIMATKKG 624 >gi|261494960|ref|ZP_05991429.1| DNA gyrase subunit A [Mannheimia haemolytica serotype A2 str. OVINE] gi|261309369|gb|EEY10603.1| DNA gyrase subunit A [Mannheimia haemolytica serotype A2 str. OVINE] Length = 898 Score = 402 bits (1033), Expect = e-109, Method: Compositional matrix adjust. Identities = 239/606 (39%), Positives = 348/606 (57%), Gaps = 55/606 (9%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 +++ VS+ L+ YL YA+S I RA+PD+RDG KPVHRR++ +M + + K Sbjct: 6 KDIIPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTYNKPHVK 65 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 SAR+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG+IDGD+ AA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRYTEV 125 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 RM ++ + +L +D++ VDF Y+ ++ P V P+K P LL NG+SGIAVGMAT+IP H Sbjct: 126 RMQKITQELLTDLDKETVDFSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATNIPPH 185 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 N+ E+ + LA I+N +IS+E+L+ YI GPDFPTG II R+ I E+YR GRG VRA Sbjct: 186 NLGEVLDGCLAYIENEQISVEELMRYIPGPDFPTGAII-NGRKGIEEAYRTGRGKVYVRA 244 Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314 + VE +G IVVTE+PYQV K++LIEKIAEL+ K+I + I D S + ++ Sbjct: 245 KASVETTDKGREQIVVTELPYQVNKAKLIEKIAELVKEKKIEGISKIDDYSDKKGISIVI 304 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 R ++++ ++ L+ M+ F +NM L G+ P+V+ L I++ ++ HRREV+ R Sbjct: 305 EVKRDAVGEVVLNHLYSLTQMQVTFGINMVALDNGQ-PKVLNLRQIIEAFVKHRREVVTR 363 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN------------------------- 409 R+ F ++ R IL+GL IA NID +I +IR Sbjct: 364 RTIFELRKARERAHILEGLAIALANIDPVIELIRASKTAEEAREGLLARPWALGNVAPML 423 Query: 410 ----------EDKPKPVMV--SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457 ED P+ + V + L+E Q AIL LRL L LE +I E LL E Sbjct: 424 EAAGVGASRPEDLPEHLGVRDGEYYLSEAQARAILELRLHRLTGLEHEKIVEEYKELLTE 483 Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517 ++ +L S ++ I E+ VK F+ RRT E++ A + +I + Sbjct: 484 IGELIHILTSPERLMEVIREELERVKTDFNDE-----RRT---EITAASGDINIEDLIAQ 535 Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569 E + V +S+ G+++ + + SA KE D ++ L A+T D IL S+ Sbjct: 536 EDVVVTLSHAGYVKYQPLSDYEAQRRGGKGKSATKMKEDDFIEKLLVANTHDTILCFSSR 595 Query: 570 GKAYTL 575 G+ Y L Sbjct: 596 GRLYQL 601 >gi|254361818|ref|ZP_04977953.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Mannheimia haemolytica PHL213] gi|153093353|gb|EDN74349.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Mannheimia haemolytica PHL213] Length = 898 Score = 402 bits (1033), Expect = e-109, Method: Compositional matrix adjust. Identities = 239/606 (39%), Positives = 348/606 (57%), Gaps = 55/606 (9%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 +++ VS+ L+ YL YA+S I RA+PD+RDG KPVHRR++ +M + + K Sbjct: 6 KDIIPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTYNKPHVK 65 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 SAR+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG+IDGD+ AA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRYTEV 125 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 RM ++ + +L +D++ VDF Y+ ++ P V P+K P LL NG+SGIAVGMAT+IP H Sbjct: 126 RMQKITQELLTDLDKETVDFSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATNIPPH 185 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 N+ E+ + LA I+N +IS+E+L+ YI GPDFPTG II R+ I E+YR GRG VRA Sbjct: 186 NLGEVLDGCLAYIENEQISVEELMRYIPGPDFPTGAII-NGRKGIEEAYRTGRGKVYVRA 244 Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314 + VE +G IVVTE+PYQV K++LIEKIAEL+ K+I + I D S + ++ Sbjct: 245 KASVETTDKGREQIVVTELPYQVNKAKLIEKIAELVKEKKIEGISKIDDYSDKKGISIVI 304 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 R ++++ ++ L+ M+ F +NM L G+ P+V+ L I++ ++ HRREV+ R Sbjct: 305 EVKRDAVGEVVLNHLYSLTQMQVTFGINMVALDNGQ-PKVLNLRQIIEAFVKHRREVVTR 363 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN------------------------- 409 R+ F ++ R IL+GL IA NID +I +IR Sbjct: 364 RTIFELRKARERAHILEGLAIALANIDPVIELIRASKTAEEAREGLLARPWALGNVAPML 423 Query: 410 ----------EDKPKPVMV--SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457 ED P+ + V + L+E Q AIL LRL L LE +I E LL E Sbjct: 424 EAAGVGASRPEDLPEHLGVRDGEYYLSEAQARAILELRLHRLTGLEHEKIVEEYKELLTE 483 Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517 ++ +L S ++ I E+ VK F+ RRT E++ A + +I + Sbjct: 484 IGELIHILTSPERLMEVIREELERVKTDFNDE-----RRT---EITAASGDINIEDLIAQ 535 Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569 E + V +S+ G+++ + + SA KE D ++ L A+T D IL S+ Sbjct: 536 EDVVVTLSHAGYVKYQPLSDYEAQRRGGKGKSATKMKEDDFIEKLLVANTHDTILCFSSR 595 Query: 570 GKAYTL 575 G+ Y L Sbjct: 596 GRLYQL 601 >gi|145638835|ref|ZP_01794443.1| DNA gyrase subunit A [Haemophilus influenzae PittII] gi|145271807|gb|EDK11716.1| DNA gyrase subunit A [Haemophilus influenzae PittII] gi|309750818|gb|ADO80802.1| DNA gyrase subunit A [Haemophilus influenzae R2866] Length = 880 Score = 402 bits (1033), Expect = e-109, Method: Compositional matrix adjust. Identities = 251/659 (38%), Positives = 376/659 (57%), Gaps = 64/659 (9%) Query: 13 VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72 ++ ++ V++ L+ YL YA+S I RA+PD+RDG KPVHRR++ +M G + Sbjct: 5 IQSSITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDREGNTANKKY 64 Query: 73 KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132 KSAR+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG+IDGD+ AA RYT Sbjct: 65 VKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRYT 124 Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192 E RM ++ + +L +D++ V+F Y+ E P V P++ P LLANG+SGIAVGMAT+IP Sbjct: 125 EVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPALLANGSSGIAVGMATNIP 184 Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252 HN+ E+ LA IDN EI+I++L+++I GPDFPT +I R+ I E+YR GRG V Sbjct: 185 PHNLNEVLNGCLAYIDNNEITIDELMQHIPGPDFPTAALI-NGRKGIEEAYRTGRGKVYV 243 Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRI 311 RAR VE +G I+V+E+PYQV K++L+EKIAELI K+I + +I D S E +RI Sbjct: 244 RARATVETNEKGREQIIVSELPYQVNKAKLVEKIAELIREKKIEGISNITDLSNKEGIRI 303 Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371 + K R ++++ ++ L+ M+ F +NM L G+ P++ L I++ ++ HRREV Sbjct: 304 EIDIK-RDAVGEVVLNHLYSLTQMQVTFGINMVALDHGQ-PRLFNLKEIIESFVLHRREV 361 Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS------------ 419 + RRS F ++ R IL+GL +A NIDE+IAIIRN + S Sbjct: 362 VTRRSIFELRKARERTHILEGLAVARSNIDEMIAIIRNSKNREEAATSISSRSWTLHSDI 421 Query: 420 ----------------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457 ++ L+ QV+AIL LRL L + ++ E + LL + Sbjct: 422 INLLDVSARPDELEENLGIQGEQYYLSPAQVNAILELRLHRLTGIAFEEVIKEYEELLVK 481 Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517 + +L+S ++ I E+ EVK F G R T E++ A + +I + Sbjct: 482 IADLLHILSSAERLMEVIREELEEVKAQF------GDDRLT--EITAASGDIDLEDLIAQ 533 Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569 E + V +S+ G+++ + + SA KE D ++ L A+T D IL S+ Sbjct: 534 EDVVVTLSHEGYVKYQPLTDYEAQRRGGKGKSATKMKEEDFIEKLLVANTHDTILCFSSR 593 Query: 570 GKAYTLPAGNL-LSGRG-HGEAIQLLIDLNHNQDI-----VTAFVYDSTCKLLVVSSKG 621 G+ Y L L + RG G I ++ L N+ I V+A+ D K +V+++ G Sbjct: 594 GRLYWLKVYQLPQASRGARGRPIVNILPLQENERITAILPVSAYEED---KFVVMATAG 649 >gi|227529857|ref|ZP_03959906.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus vaginalis ATCC 49540] gi|227350226|gb|EEJ40517.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus vaginalis ATCC 49540] Length = 839 Score = 402 bits (1033), Expect = e-109, Method: Compositional matrix adjust. Identities = 238/629 (37%), Positives = 374/629 (59%), Gaps = 38/629 (6%) Query: 10 NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69 N L + V+L ++ +L YA+S I RA+PD+RDG KPV RRI++ M+E+G+ Sbjct: 4 NDLSNNRITDVNLTSQMKNSFLDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVTPD 63 Query: 70 AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129 +KKSARIVG+V+GK HPHGD S+Y+ LVR+AQ F RY L+ G GNFG+IDGDS AA Sbjct: 64 KPYKKSARIVGDVMGKFHPHGDSSIYEGLVRMAQDFSYRYMLVDGHGNFGSIDGDSPAAM 123 Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189 RYTEA+M+++A +L+ ++++ VDF+D Y+ + EP V P++FPNLL NG SGIAVGMAT Sbjct: 124 RYTEAKMSKIAVEMLRDINKNTVDFQDNYDGTEKEPTVLPARFPNLLVNGASGIAVGMAT 183 Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249 +IP+HN+ E+ A L+DNP+ + E L++ + GPDFPTGG+++ + I ++Y GRG Sbjct: 184 NIPTHNLGEVISAIHVLMDNPDATTEDLMKVLPGPDFPTGGVVM-GKSGIRKAYETGRGT 242 Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-ED 308 VRA+ +EE G IVV EIPY V K++LIE+IA+L K I + D+ DE+ E Sbjct: 243 IVVRAKVDIEERKNGRQQIVVHEIPYMVNKAKLIERIADLARNKEIEGITDVNDETDREG 302 Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368 +RIV+ + R ++++ +++ ++ M+T F NM + G P+++ L IL+ +L H+ Sbjct: 303 MRIVIDVR-RDASAEVILNNLYKMTLMQTTFNFNMLAIVNG-APKILSLKEILQYYLEHQ 360 Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTE 425 V+ RR+ F ++ + R I+ GL IA +IDEII IIRN K ++ + L++ Sbjct: 361 ENVVRRRTEFDLKKAENRAHIVAGLRIALDHIDEIINIIRNSQTSEIAKNQLMENYGLSD 420 Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485 Q AIL++RL L LE +I++E L+A +L + +++ NQI + E+ EI Sbjct: 421 RQAQAILDMRLVRLTGLEREKIEAEYKKLMAAIADYKDIL-AHQERINQIIYD--ELLEI 477 Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL-----KSH---S 537 K G +R T +V + + E+E I V +++ G+I+ L KS Sbjct: 478 QKK---FGDKRRTELQVGDITNIEDEDLI-EEESIIVTLTHNGYIKRLPVDEFKSQHRGG 533 Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL---------------PAGNLLS 582 + + + D ++ + + T D +L + GK Y++ P NLL Sbjct: 534 RGVKGMGVHKDDFIEQLISSDTHDLLLFFTNSGKVYSMKGYEIPEYGRSAQGIPIINLL- 592 Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDST 611 G + E I +I+++H + F++ +T Sbjct: 593 GIDNKEKISAVINVSHETNDDDKFLFFTT 621 >gi|90416545|ref|ZP_01224476.1| DNA gyrase subunit A [marine gamma proteobacterium HTCC2207] gi|90331744|gb|EAS46972.1| DNA gyrase subunit A [marine gamma proteobacterium HTCC2207] Length = 893 Score = 402 bits (1033), Expect = e-109, Method: Compositional matrix adjust. Identities = 265/732 (36%), Positives = 407/732 (55%), Gaps = 84/732 (11%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 + + V++ L++ YLAYA+S I RA+PD+RDG KPVHRR + AM+E+G D+ A+KK Sbjct: 6 QEIVPVNIEDELKQSYLAYAMSVIVGRALPDVRDGLKPVHRRALFAMNELGNDWNKAYKK 65 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 SAR+VG+VIGK HPHGD +VY+++VR+AQPF RY L+ GQGNFG++DGDSAAA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDSAVYETIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEI 125 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 RMT++A +L+ +++D VDF Y+E + P V P++ PNLL NG+SGIAVGMAT+IP H Sbjct: 126 RMTKIAHALLEDLEKDTVDFVPNYDETEQIPHVLPTRIPNLLVNGSSGIAVGMATNIPPH 185 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 N+ E+ + LA+I+NPEI++++L+EYI GPDFPT II R I+++YR GRG VRA Sbjct: 186 NLTEVVKGCLAMIENPEITVDELMEYIPGPDFPTAAII-NGRAGIIQAYRTGRGRIYVRA 244 Query: 255 RWCVE--EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312 + +E E R I++TEIPYQ+ K+RLIE+IAEL+ K++ + ++RDES +D V Sbjct: 245 KADIEVNEKTR-RETIIITEIPYQLNKARLIERIAELVKEKKLEGISELRDESDKDGLRV 303 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 + R+ ++++ ++F + +++ F +N+ L G+ P+++ L ++ +L HRREV+ Sbjct: 304 VIEIKRTDVGEVVLNNLFAQTQLQSVFGINVVALVDGQ-PKILNLQQLIHHFLRHRREVV 362 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSR--------- 420 RR+ + ++ R L+G IA NIDEIIA+I+ + + + +V+R Sbjct: 363 TRRTIYLLKKARERAHTLEGFAIALGNIDEIIALIKASPSATEAREALVARGWNPGSVIQ 422 Query: 421 -------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLL 455 + L+ Q IL LRL L +E +I +E L Sbjct: 423 MLDRAGAQATRPEWLEDHYGLRDGKYHLSPEQAKDILELRLHRLTGMEHDKIIAEFAVKL 482 Query: 456 AEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMI 515 E + +L + I E+ V E F RRT E S D + +I Sbjct: 483 EEIAEYQDILGDLTRLMTVIREELEAVVEEFGDE-----RRTEIIE-SLHDLTI--EDLI 534 Query: 516 EKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567 +E V ISN G+ ++ + + SA K+ D ++ L A T IL + Sbjct: 535 TEEDRVVTISNGGYAKTQPLSDYQAQRRGGMGKSATAVKDEDFVEHLLVASTHATILCFT 594 Query: 568 TDGKAYTLPAGNL-LSGRG-HGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFI 625 GK Y L + ++GR G + L+ L + I + L V + F+ Sbjct: 595 NLGKVYWLKVYQIPVAGRNSRGRPVINLLPLGEGERI--------SSILPVEEYSADKFV 646 Query: 626 VEESEIIANTRKGKTFLKVSSEEK---MKLVVKVTGDHV---AVVGENRKLLIFSIDQIP 679 + + AN KT L+ S + ++ V V GDH+ A++ ++ +++ S Sbjct: 647 IMAT---ANGTVKKTSLEQYSRPRSVGLRAVDLVEGDHLVGTAIIDDDSDVMLLS----- 698 Query: 680 EMSRGKGVRLQS 691 S GK VR S Sbjct: 699 --SEGKAVRFAS 708 >gi|169351627|ref|ZP_02868565.1| hypothetical protein CLOSPI_02408 [Clostridium spiroforme DSM 1552] gi|169291849|gb|EDS73982.1| hypothetical protein CLOSPI_02408 [Clostridium spiroforme DSM 1552] Length = 820 Score = 402 bits (1032), Expect = e-109, Method: Compositional matrix adjust. Identities = 261/766 (34%), Positives = 420/766 (54%), Gaps = 44/766 (5%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 E ++ V L ++ ++ YA+S I RA+PD+RDG KPV RRII+ MS++G G +K Sbjct: 3 ERGIRKVKLTSEMKNSFMQYAMSVIVARALPDVRDGLKPVQRRIIYGMSDLGCTPGTPYK 62 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSARIVGEV+GK HPHGD S+Y++LVR+AQ F RY L+ G GNFG+IDGD AAA RYTE Sbjct: 63 KSARIVGEVMGKYHPHGDSSIYEALVRMAQDFSYRYMLVDGHGNFGSIDGDGAAAQRYTE 122 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 ARM++++ +++ + ED +DF Y+ E+ EP V P++ PNLL NG++GIAVGMAT+IP Sbjct: 123 ARMSKISSELVRDLKEDTIDFIPNYDGEEQEPSVLPARIPNLLINGSTGIAVGMATNIPP 182 Query: 194 HNVQEICEAALALIDNPEISIEKLLE-YIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252 HN+ E+ +A LA+ NP+ISI +L+E YI GPDFPTGG I+ + +I ++Y G G + Sbjct: 183 HNLGEVIDAILAVAKNPDISIVELMENYIQGPDFPTGGYIL-GKSAIKKAYETGNGLIVM 241 Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312 RA+ +EE G I+VTE+PY V K+R+IEK+++L+ K+I + +IRDES D V Sbjct: 242 RAKTEIEEKG-NKKVIIVTELPYMVNKARMIEKMSQLVRDKKIEGITEIRDESNRDGIRV 300 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 + R + P++++ ++ L+ ++T F N L + P+ + L ++ +L H+ EV+ Sbjct: 301 VIELRRDIQPEVILNQLYKLTSLQTTFGANCIAL-VNNEPKTLNLKEMISLYLEHQEEVI 359 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVD 429 RR+ FR+ + R IL+GL A ID II +IR+ D + ++ F++++ Q Sbjct: 360 RRRTKFRLNKAEDRAHILEGLKRALDQIDAIIELIRSSRTTDIIQTRLMEEFNMSDKQAK 419 Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489 AI ++L+ L LE +I+ +L+ LL + +L + ++ + I E+ E+K+ + Sbjct: 420 AIREMQLQRLAGLERQKIEDDLNKLLEIIADLKDILENRERLLSIIHDELEEIKDKYGD- 478 Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD--------LS 541 +RRT E+ + + +I E + + ++N G+I+ + + + Sbjct: 479 ----KRRT---EIIQGTFDLEDEDLIPVEDVIISLTNNGYIKRMPVDTYKSQNRGGRGIK 531 Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS-GR-GHGEAIQLLIDLNHN 599 + D + ++ T D +L + GK Y L N+ GR G + L+DL+ Sbjct: 532 GMSTNNDDIVSSLINMSTHDDLLFFTNFGKVYRLKGYNIPEFGRSAKGLPVVNLLDLDKE 591 Query: 600 QDIVTAFVYD-------STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652 + I + D S L V+ G V +E + GK + + +++ Sbjct: 592 ESIKSMINIDRKQIQQNSNYYLFFVTKDGIVKRVHINEFQLIRQSGKIAICLKDNDQLVQ 651 Query: 653 VVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR----GKGVRLQSYKDGGISDVICFKI-C 706 V +G D + + N KL+ F + M R KG+ + DG S+V+ Sbjct: 652 VKLTSGNDQILIAASNGKLVRFEESNVRPMGRISSGVKGINV----DG--SEVVGMTTDK 705 Query: 707 EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752 EG + R Y + L RGG G R+GK ++ Sbjct: 706 EGKYILVVTERGYGKMSPLEEYRLSNRGGKGVKTIHTTERNGKIVA 751 >gi|303233441|ref|ZP_07320109.1| DNA gyrase, A subunit [Atopobium vaginae PB189-T1-4] gi|302480449|gb|EFL43541.1| DNA gyrase, A subunit [Atopobium vaginae PB189-T1-4] Length = 986 Score = 402 bits (1032), Expect = e-109, Method: Compositional matrix adjust. Identities = 241/699 (34%), Positives = 404/699 (57%), Gaps = 35/699 (5%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 +K L ++ +L Y++S I RA+PD+RDG KPVHRRI++AM+E + KKSA Sbjct: 132 LKPTDLSEEMKASFLEYSMSVIVARALPDVRDGLKPVHRRILYAMNEAHIVPSRPHKKSA 191 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 VGEV+GK HPHGD S+Y+++VR+AQ F R PLI G GNFG+IDGD AAA RYTE+R+ Sbjct: 192 WTVGEVMGKYHPHGDSSIYEAMVRMAQDFSMRLPLIDGHGNFGSIDGDPAAAMRYTESRL 251 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 T A +L+ +D++ VD + Y+E EP V P++FPNLL NG++GIAVGMAT++P HN+ Sbjct: 252 THAAMDMLRDLDKETVDLQPNYDESLQEPAVLPARFPNLLVNGSNGIAVGMATNVPPHNL 311 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 QE+ A +IDNP ++E L+ + GPDFPTGGII+ + + I ++Y+ GRG +R++ Sbjct: 312 QEVARAVCCMIDNPNSTLEDLMACLPGPDFPTGGIIMGT-DGIKDAYKTGRGTLTIRSKV 370 Query: 257 CVEEVGR-GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLF 314 +E GR G +V+TEIPYQV KS L E+IA+ + K+I + D+RDES + +RIV+ Sbjct: 371 HIENTGRAGRQRLVITEIPYQVNKSLLQERIAQQVNEKKIEGISDMRDESNRKGMRIVID 430 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K ++ P +++ +++ + ++T F + +++ + VP+ + L +++ ++ H+++V+ R Sbjct: 431 LKQGAV-PQVVLNNLYKRTQLQTSFSV-IDIALVDGVPRTLSLHDMIRYYIKHQQDVVTR 488 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAI 431 R+ F + +RV IL+GLLIA NIDE++ IIR ++ + K M RF + + Q +AI Sbjct: 489 RTKFDLARAQKRVHILEGLLIAVDNIDEVVHIIRSSKDDAEAKSRMSERFGIDDIQGEAI 548 Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491 L +RLR L L ++ +++D L + + LL + ++ I E+ ++ E ++ Sbjct: 549 LQMRLRRLTGLARDELAAQIDELYKQIAYLTDLLQNPEKMLEVIKEELMQIAERYASP-- 606 Query: 492 LGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSL--------KSHSVDLSA 542 RRT ++S + L + +I +E + + +++ +I+ L K + Sbjct: 607 ---RRT---KISTNEAQILDVEDLITEEDMVITVTHSSYIKRLPVATYRAQKRGGKGVQG 660 Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDL---N 597 L K+ D ++ A T D +L + GK Y L L G G A+ ++ L Sbjct: 661 LSLKDNDFVEDLFVASTHDYVLFFTNKGKVYRLKVHELPVGSRTSRGSALVNVLPLAEDE 720 Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657 H ++T + L+ + +G +E + R G + + +++ V +V Sbjct: 721 HPTAVITTRDFPDNQYLVFATKQGMVKKTAIAEYDKSRRDGLIAINLKDGDELVNVRRVC 780 Query: 658 -GDHVAVVGENRKLLIFSIDQIPEMSRG----KGVRLQS 691 G+ + + K ++FS + + SR KG+ L++ Sbjct: 781 EGNRIILCTSAGKAIMFSEEDVRPTSRNTSGVKGISLKN 819 >gi|25011002|ref|NP_735397.1| DNA gyrase subunit A [Streptococcus agalactiae NEM316] gi|77413228|ref|ZP_00789425.1| DNA gyrase, A subunit [Streptococcus agalactiae 515] gi|23095402|emb|CAD46607.1| DNA gyrase A subunit [Streptococcus agalactiae NEM316] gi|77160688|gb|EAO71802.1| DNA gyrase, A subunit [Streptococcus agalactiae 515] Length = 819 Score = 402 bits (1032), Expect = e-109, Method: Compositional matrix adjust. Identities = 235/638 (36%), Positives = 375/638 (58%), Gaps = 39/638 (6%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 ++N+ V+L ++ ++ YA+S I RA+PD+RDG KPVHRRI++ M+E+G+ K Sbjct: 3 DKNLVDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHK 62 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSARI G+V+GK HPHGD S+Y+++VR+AQ + R+ L+ G GNFG++DGD AAA RYTE Sbjct: 63 KSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTE 122 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 ARM+++A +L+ ++++ VDF+D Y+ + EP+V P++FPNLL NG +GIAVGMAT+IP Sbjct: 123 ARMSKIALEMLRDINKNTVDFQDNYDGSEREPLVLPARFPNLLVNGATGIAVGMATNIPP 182 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E +A ++DNP+++ +L+E I GPDFPTG +++ R I +Y G+G +R Sbjct: 183 HNLGESIDAVKLVMDNPDVTTRELMEVIPGPDFPTGALVM-GRSGIHRAYETGKGSIVLR 241 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312 +R +E G IVVTE PY V K+++ E I L KRI + +RDES+ E VR V Sbjct: 242 SRTEIETTSNGKERIVVTEFPYGVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGVRFV 301 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 + + R ++++ ++F L+ ++T F NM + G VP+++ L I+ ++ H++EV+ Sbjct: 302 IEVR-RDASANVILNNLFKLTSLQTNFSFNMLAIEKG-VPKILSLRQIIDNYIEHQKEVI 359 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVD 429 RR+ F + R IL+GLL+A ++DE+I IIRN + + ++SRF L+E Q Sbjct: 360 VRRTQFDKAKAEARAHILEGLLVALDHLDEVITIIRNSETDTIAQAELMSRFELSERQSQ 419 Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489 AIL++RLR L LE +I+SE ++LLA + +L ++ I E+ EVK K Sbjct: 420 AILDMRLRRLTGLERDKIQSEYNDLLALIADLADILAKPERVVTIIKEEMDEVKR---KY 476 Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSVDLS 541 D R EV + + +IE+E + + +SN+G+I+ L K + Sbjct: 477 ADARRTELMIGEVL----SLEDEDLIEEEDVLITLSNKGYIKRLAQDEFRAQKRGGRGIQ 532 Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLLSGRGH 586 D ++ + T D +L + G+ Y LP NLL Sbjct: 533 GTGVNNDDFVRELVSTSTHDTVLFFTNLGRVYRLKAYEIPEYGRTAKGLPIVNLLK-LDE 591 Query: 587 GEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAF 624 GE IQ +I+ +D+ + + +T + +V + + F Sbjct: 592 GETIQTIINA-RKEDVANKYFFFTTQQGIVKRTSVSEF 628 >gi|288818145|ref|YP_003432493.1| DNA gyrase subunit A [Hydrogenobacter thermophilus TK-6] gi|288787545|dbj|BAI69292.1| DNA gyrase subunit A [Hydrogenobacter thermophilus TK-6] gi|308751746|gb|ADO45229.1| DNA topoisomerase (ATP-hydrolyzing) [Hydrogenobacter thermophilus TK-6] Length = 761 Score = 402 bits (1032), Expect = e-109, Method: Compositional matrix adjust. Identities = 258/689 (37%), Positives = 400/689 (58%), Gaps = 63/689 (9%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + V++ +++ Y+ YA+S I RAIPD RDG KPV RRI++AM +MGL F KSA Sbjct: 3 ITTVAIEEEVKQSYIDYAMSVIVGRAIPDARDGLKPVQRRILYAMYQMGLTPEKPFVKSA 62 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 RIVG V+G HPHGDQ+VYD+LVR+AQ F RYPLISGQGNFG+IDGD AA RY+EA++ Sbjct: 63 RIVGTVLGYYHPHGDQAVYDALVRMAQDFNMRYPLISGQGNFGSIDGDPPAAMRYSEAKL 122 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 ++VA +L+ ++E+ VDF ++ EP + PSKFPN+L NG+SGIAVG+ATSIP HN+ Sbjct: 123 SKVAIKMLEDIEENTVDFIPNFDGSTVEPALLPSKFPNMLCNGSSGIAVGLATSIPPHNL 182 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 +E+C A + L NP IS E++++ I GPDFPTGG IVE+ + ++E Y GRG RVRA+ Sbjct: 183 KEVCSALIELAKNPNISTEEIMKRIKGPDFPTGG-IVENYQELIEYYHTGRGHVRVRAKA 241 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFP 315 VE++ G IV+TEIPYQV K+ LI+++AEL+ ++ + +IRDES E +RIV+ Sbjct: 242 HVEKLQGGREQIVITEIPYQVNKAELIKRMAELVREGKLKEISEIRDESDKEGIRIVIEL 301 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 K R ++E ++ + + FP+N VL + P+ + + +L+E+L HR EV+ RR Sbjct: 302 K-RDAQGQKVLEKLYKHTALRKNFPINFVVL-IDNQPKQVGIKELLQEFLRHRLEVILRR 359 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDKP--KPVMVSRFSLTENQVDAIL 432 + ++ + R+ I++GL A ++D++I IR ++D P K ++ ++L+E Q +A+L Sbjct: 360 AKHHLKKAEDRLHIVEGLTKALEHLDKVIQDIRSSKDVPQAKEKLMKNYTLSERQANAVL 419 Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492 ++RL+ L LE +++ E L+ E L++S + +I I+E++EI + Sbjct: 420 DMRLQRLTSLESSKLEEEKKQLIQSIEHYKKLISS---EEERIKVFIQEMEEIVKEFPSP 476 Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKS-----HSVDLSALHFKE 547 R E + ITV+I + G I L+ VD+ + F E Sbjct: 477 RRSFVLGFENEEVGQ------------ITVIIYSNGKIMPLEEMQEEGQVVDVLDVPFSE 524 Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTA 605 G + ++S G+ Y + L G EA ++ +V A Sbjct: 525 G--------------LFMVSNRGRVYWIAGSQALQGSKVSFKEA---------DESVVGA 561 Query: 606 FV-YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV-----TGD 659 FV ++ ++++++ +G + + T +G + +K S EE VVKV GD Sbjct: 562 FVRSQASHRIILITKRGYVKKIPIVDFEYKT-QGMSIIKFSEEEDE--VVKVLQSPEEGD 618 Query: 660 HVAVVGENRKLLIFSIDQIPEMSRG-KGV 687 + ++ K+L F I IP + G KGV Sbjct: 619 -ILLLTRKGKMLRFPIRDIPPATVGSKGV 646 >gi|306833523|ref|ZP_07466650.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus bovis ATCC 700338] gi|304424293|gb|EFM27432.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus bovis ATCC 700338] Length = 818 Score = 402 bits (1032), Expect = e-109, Method: Compositional matrix adjust. Identities = 245/702 (34%), Positives = 408/702 (58%), Gaps = 30/702 (4%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 ++N+ V+L ++ ++ YA+S I RA+PD+RDG KPVHRRI++ M+E+G+ K Sbjct: 3 DKNLIDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHK 62 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSARI G+V+GK HPHGD S+Y+++VR+AQ + R+ L+ G GNFG++DGD AAA RYTE Sbjct: 63 KSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTE 122 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 ARM+++A +L+ ++++ VDF+D Y+ + EP+V PS+FPNLL NG +GIAVGMAT+IP Sbjct: 123 ARMSKIALEMLRDINKNTVDFQDNYDGSEREPLVLPSRFPNLLVNGATGIAVGMATNIPP 182 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E +A ++DNP+++ +L+E + GPDFPTG +++ + I ++Y G+G +R Sbjct: 183 HNLGESIDAVKLVMDNPDVTTRELMEVLPGPDFPTGALVM-GKSGIRKAYETGKGSIVLR 241 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312 +R +E G IVVTE PY V K+++ E I L KRI + +RDES+ E +R V Sbjct: 242 SRTEIETTKSGRERIVVTEFPYGVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGIRFV 301 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 + + R ++++ ++F L+ ++T F NM + G VP+++ L I+ +++ H++EV+ Sbjct: 302 IEVR-RDASANVILNNLFKLTSLQTNFSFNMLAIENG-VPKILSLKQIIVDYIEHQKEVI 359 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVD 429 RR+ F ++R IL+GLL+A ++DE+I+IIRN + + ++SRF L+E Q Sbjct: 360 VRRTEFDKAKAEKRAHILEGLLVALDHLDEVISIIRNSETDVIAQGELMSRFDLSERQSQ 419 Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489 AIL++RLR L LE +I++E D+LLA + +L ++ I E+ ++K K Sbjct: 420 AILDMRLRRLTGLEREKIQAEYDDLLALIADLADILAKPERVVAIIKEEMDDIKR---KY 476 Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSVDLS 541 D R EV + + +IE+E + + +SN+G+I+ L K + Sbjct: 477 ADPRRTELMVGEVL----SLEDEDLIEEEDVLITLSNKGYIKRLAQDEFRAQKRGGRGVQ 532 Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS-GR-GHGEAIQLLIDLNHN 599 + D ++ + T D + ++ G+ Y L A + GR G I L+ L+ Sbjct: 533 GTGVNDDDFVRELVSTSTHDHVYFMTNKGRVYRLKAYEIPEYGRTAKGLPIVNLLKLDEG 592 Query: 600 QDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655 + + T D L V+ +G ESE + G L + +++ V++ Sbjct: 593 EIVQTIISQSGHDDKESYLFFVTRQGVVKRTLESEFSNIRQNGLKALNLKDGDELINVIR 652 Query: 656 VTGDHVAVVGENRKLLI-FSIDQIPEMSR-GKGVRLQSYKDG 695 G++ ++G + F+ + MSR GVR + ++G Sbjct: 653 TNGNNDIIIGTKTGYSVRFNESAVRSMSRSATGVRGVNLREG 694 >gi|158423952|ref|YP_001525244.1| DNA gyrase subunit A [Azorhizobium caulinodans ORS 571] gi|158330841|dbj|BAF88326.1| DNA gyrase subunit A [Azorhizobium caulinodans ORS 571] Length = 917 Score = 402 bits (1032), Expect = e-109, Method: Compositional matrix adjust. Identities = 241/629 (38%), Positives = 361/629 (57%), Gaps = 51/629 (8%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 +++ VS+ L YL YA+S I RA+PD+RDG KPVHRRI+ +M E G ++ ++KS Sbjct: 16 DIRPVSITDELSRSYLDYAMSVIVARALPDVRDGLKPVHRRILFSMHENGYEWNKQYRKS 75 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 AR+VG+VIGK HPHG+QSVYD+LVR+ Q F R PLI GQGNFG++DGD AA RYTE R Sbjct: 76 ARVVGDVIGKYHPHGNQSVYDALVRMVQTFSMRVPLIDGQGNFGSVDGDPPAAMRYTEVR 135 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 + +V + +L + +D VDF+ Y+ ++EP V P++FPNLL NG GIAVGMAT+IP HN Sbjct: 136 LEKVTQSLLDELGQDTVDFQANYDNSENEPSVLPARFPNLLVNGAGGIAVGMATNIPPHN 195 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 + E+ + +AL+D+P + E LL+YI GPDFPTG +I+ R I ++Y GRG +RAR Sbjct: 196 LGEVIDGTVALLDDPVMDPELLLDYIPGPDFPTGALIM-GRSGIRQAYMTGRGSIMMRAR 254 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLF 314 +E V + I++TEIPYQV K+ +IEKIAEL+ KR+ + +IRDES E +R+V+ Sbjct: 255 ATIETVRKEREAIIITEIPYQVNKATMIEKIAELVRDKRLEGIAEIRDESDREGMRVVIE 314 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K R D+++ +++ ++ ++T F +NM LS GR P VM L L ++A R EV+ R Sbjct: 315 VK-RDAQADVVLNNLYRMTPLQTSFGVNMVALSGGR-PAVMTLHDTLTAFIAFREEVVSR 372 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED----------------------- 411 R+ F ++ R +L GL IA NIDEII +IR Sbjct: 373 RTKFLLRKARDRAHVLVGLAIAVANIDEIIQLIRTAPDPGTARERLMERHWPAKDVASLV 432 Query: 412 ----KPKPVMVS--RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLL 465 P+ V+ S + L+ Q AIL+LRL+ L L +I ELD L E + +L Sbjct: 433 ALIADPRHVVASDGTYRLSMEQARAILDLRLQRLTALGRDEISDELDKLALEIAEYLEIL 492 Query: 466 NSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVIS 525 S + I E+ ++ F+ RRT E++ + +I +E + V +S Sbjct: 493 ASRPRMRAIIREELLALRAEFNTP-----RRT---EITEGFGDLDDEDLIAREDMVVTVS 544 Query: 526 NRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPA 577 + G++ R+ + SA+ ++ D + A T +L S+ G+ Y L Sbjct: 545 HAGYVKRVPLSTYRAQRRGGKGRSAMQTRDEDFVTRLFVASTHAPVLFFSSKGQVYKLKV 604 Query: 578 GNLLSG--RGHGEAIQLLIDLNHNQDIVT 604 L + + G+A+ ++ L ++ I + Sbjct: 605 WRLPAAAPQARGKALINILPLQPDERITS 633 >gi|157363212|ref|YP_001469979.1| DNA gyrase, A subunit [Thermotoga lettingae TMO] gi|157313816|gb|ABV32915.1| DNA gyrase, A subunit [Thermotoga lettingae TMO] Length = 808 Score = 402 bits (1032), Expect = e-109, Method: Compositional matrix adjust. Identities = 267/753 (35%), Positives = 423/753 (56%), Gaps = 48/753 (6%) Query: 26 LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85 L E Y+ Y++S I RAIPD+RDG KPV RRI++AM E+GL A KK ARIVGEV+GK Sbjct: 13 LVELYMNYSMSVIIGRAIPDVRDGLKPVQRRILYAMHELGLTHNAQSKKCARIVGEVLGK 72 Query: 86 LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145 HPHGD SVYD+LVRLAQPF RYPL+ GQGNFG+ID D AA RYTEA+++++AE +LQ Sbjct: 73 YHPHGDASVYDALVRLAQPFSVRYPLVIGQGNFGSIDRDPPAAMRYTEAKLSELAEEMLQ 132 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 +D++ V +++ EP V PSK PNLL NG +GIAVGMATSIP HN+QE+ A Sbjct: 133 DLDKETVTMTKNFDDSLDEPEVLPSKVPNLLINGANGIAVGMATSIPPHNLQEVVNAIEM 192 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265 LI+NPE +I LL I GPDFPTG +IV E + E Y G+G +R + EE G+ Sbjct: 193 LIENPEATIADLLRIIKGPDFPTGALIVNGNE-LTEVYATGKGRIVLRGKVHFEE-GKRF 250 Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIP--LLEDIRDESAED-VRIVL-FPKNRSLD 321 +V+TEIPY V K+ LIE+IA A++ P ++++IRDES ++ +RIV+ PKN + Sbjct: 251 NNVVITEIPYNVSKAALIEEIASY--AEKNPKMMIKNIRDESDKNGLRIVVEIPKN--AN 306 Query: 322 PDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQ 381 ++++ +++ + ++T F + M V+ GR P++M L +LK ++ HR +V+ +R+ + ++ Sbjct: 307 AEIILNNLYKHTSLQTSFSVQMLVID-GRRPKLMNLSQLLKAFIKHRFDVIRKRAEYELK 365 Query: 382 AIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQVDAILNLRLRS 438 RR IL+G++ A I ++ I+R + M + S+T Q AIL++RL Sbjct: 366 VYSRRAHILEGIMKAARAIGVVVDIVRTSKDSEEAMKNLIEALSITNEQAKAILDMRLGR 425 Query: 439 LRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTT 498 L LE +++ E L+ + E + +L+ ++ +N + E+ E+K+ ++ RRT Sbjct: 426 LTGLEIEKLQGEYSQLIKKIEDVKDILSRDERVYNVMYQELEELKKKYADE-----RRTK 480 Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSVD------LSALHFKEGDS 550 ++ + T + +I E + + ++ +G+++ SLK + + E D Sbjct: 481 IENITDSLSYT-PEDLIPNEDVVITLTEKGYLKSTSLKDYRSQRRGGKGIVGARTAEDDE 539 Query: 551 LKIALHAHTTDRILLLSTDGKAYTLPAGNL-LSGRG-HGEAIQLLIDLNHNQDIVTAFVY 608 + + + L +++ GKAY L + L+GR G+ I+ ++L ++ ++T + Sbjct: 540 ILTVCTSKMHSQTLFVTSAGKAYILKNYEIELTGRDTKGKPIRAYLNLEEDESVLTMISF 599 Query: 609 DS-TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT-----GDHVA 662 D L++V+ G E T +G + S + +VV T D + Sbjct: 600 DEWKGDLVLVTKSGRIKRTPLKEFENTTSRGIRAITFSDSD---VVVSATLSSSESDQII 656 Query: 663 VVGENRKLLIFSIDQIPEMSRGK----GVRLQSYKDGGISDV-ICFKICEGLTWIDSAGR 717 + +N + F + + +M R G+RL+ KD + V + + CE LT I G Sbjct: 657 IATKNGMAIRFPLKDVRQMGRSAMGVIGIRLRE-KDEVVGMVNVPDENCEILT-ITVRGF 714 Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750 ND + RGGVG G ++G+ Sbjct: 715 GKRTPVNDY--RVQSRGGVGIKTMPGVEKAGQL 745 >gi|254440269|ref|ZP_05053763.1| DNA gyrase, A subunit [Octadecabacter antarcticus 307] gi|198255715|gb|EDY80029.1| DNA gyrase, A subunit [Octadecabacter antarcticus 307] Length = 921 Score = 402 bits (1032), Expect = e-109, Method: Compositional matrix adjust. Identities = 244/674 (36%), Positives = 371/674 (55%), Gaps = 57/674 (8%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 +S+ ++ YL YA+S I RAIPDLRDG KPVHRRI++AM E G A++KSAR V Sbjct: 26 ISITAEMKTSYLDYAMSVIVSRAIPDLRDGLKPVHRRILYAMYEAGNTHDKAYRKSARAV 85 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+V+GK HPHGD ++YD+L R+AQ F PL+ GQGNFG++DGD+ AA RYTE RM + Sbjct: 86 GDVMGKYHPHGDSAIYDALARMAQDFSMSLPLLDGQGNFGSMDGDNPAAMRYTEVRMDKP 145 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A +L +D+D VDF+D Y+ +D EP V PS+FPN+L NG GIAVGMAT+IP HN+ E Sbjct: 146 AAYMLADIDKDTVDFQDNYDGKDREPTVLPSRFPNMLVNGAGGIAVGMATNIPPHNLGEA 205 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 +A L LI+NP+++ E L+EYI GPDFPTGGI++ R ++Y GRG RA+ E Sbjct: 206 IDACLGLIENPDLTSEDLIEYIPGPDFPTGGIML-GRAGARKAYLEGRGSVITRAKTHTE 264 Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKNR 318 E+ + + I+++EIPYQV KS +I++IAE K+I + ++DES + VR+V+ K R Sbjct: 265 EIRKDRFAIIISEIPYQVNKSTMIDRIAEAARDKKIEGISHVQDESDRNGVRVVIELK-R 323 Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378 ++++ +F + M+T F NM L+ GR P+ + L L +L R +V+ RR++F Sbjct: 324 DATAEVVLNQLFRFTPMQTYFGCNMLALNGGR-PETLTLRRFLTSFLDFREDVVIRRTAF 382 Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDKP--KPVMVSR--------------- 420 + R +L GL +A N+DE++A IR + D P + +++R Sbjct: 383 ELNKARDRAHVLCGLAVAVSNVDEVVATIRASADAPSARAALMTRAWPAEEILPFILLID 442 Query: 421 -----------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGK 469 ++L+E Q AIL LRL+ L ++ ++ EL+ L + ++ ++L S + Sbjct: 443 DPTHPANEDGTYNLSEIQARAILELRLQRLTQIGVKEVTDELEELAKKIKEYLAILASRE 502 Query: 470 QQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW 529 + I E+ E K +F+ RRT + S + +IE + + V ++ G+ Sbjct: 503 RIMQIIRDELAECKTLFAVP-----RRTQIVDWS---GDMEDEDLIESQDMVVTVTETGY 554 Query: 530 I--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL 581 I R+ K +S KE D + A+T ++L +TDG Y L L Sbjct: 555 IKRTALVDFRAQKRGGKGVSGGSLKEDDVVTTLFVANTHTQLLFFTTDGMVYKLKTWRLP 614 Query: 582 SGR--GHGEAIQLLIDLNHNQDIVTAFVYD------STCKLLVVSSKGNAFIVEESEIIA 633 G G+AI ++ + I D +++ +S G S+ Sbjct: 615 QGSRTSKGKAIVNILPIPTGVSIAAIMPVDRDEKDWDDLQIVFATSAGTVRRNRLSDFTN 674 Query: 634 NTRKGKTFLKVSSE 647 R GK +K E Sbjct: 675 VMRNGKIAMKFEGE 688 >gi|296535360|ref|ZP_06897560.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Roseomonas cervicalis ATCC 49957] gi|296264302|gb|EFH10727.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Roseomonas cervicalis ATCC 49957] Length = 941 Score = 402 bits (1032), Expect = e-109, Method: Compositional matrix adjust. Identities = 248/672 (36%), Positives = 368/672 (54%), Gaps = 68/672 (10%) Query: 2 GVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61 G + S + E ++L + YL YA+S I RA+PD+RDG KPVHRRI+ +M Sbjct: 9 GNNGTGPSGHIPPEGTLPIALEEEMRRSYLDYAMSVIVARALPDVRDGLKPVHRRILFSM 68 Query: 62 SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121 E G +KKSAR+VG+V+GK HPHGD ++YD++VR+AQ F R PLI GQGNFG++ Sbjct: 69 QENGFTADKPYKKSARVVGDVMGKYHPHGDSAIYDAMVRMAQTFSLRVPLIDGQGNFGSM 128 Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181 DGD AA RYTEAR+ + A +L+G+DED VDF Y+E EP V P+ FPNLL NG + Sbjct: 129 DGDPPAAMRYTEARLAKSAVALLEGIDEDTVDFAPNYDESAQEPRVLPAAFPNLLVNGAN 188 Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVE 241 GIAVGMAT+IP+HN E+ +A LALI PE S+E L++ + GPDFPTG +I+ R I Sbjct: 189 GIAVGMATNIPTHNPGEVIDATLALIAEPETSLEDLMKIMPGPDFPTGALIL-GRAGIRS 247 Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301 ++ GRG +RAR +EE+ G I ++EIPYQV K+ LIE+IAEL+ AK+I + D+ Sbjct: 248 AFETGRGSIVLRARAEIEEMRGGRSLIAISEIPYQVNKAALIERIAELVRAKQIEGISDL 307 Query: 302 RDESAED-VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360 RDES +RIV+ K + P++++ ++ ++++T F +N L GR PQ M L Sbjct: 308 RDESDRSGLRIVIELK-KDATPEVVLNHLYRYTNLQTSFAVNFLALHQGR-PQQMGLRQA 365 Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN----------- 409 L+ ++ R EV+ RRS FR+ R +L GL IA NIDE+I +IR Sbjct: 366 LQAFIDFREEVILRRSRFRLAKARDRGHLLVGLAIAVANIDEVIRLIRESPDAVTARTAL 425 Query: 410 -----------------EDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELD 452 +D V LTE Q IL LRL+ L LE +I +ELD Sbjct: 426 MARDWPVADVGPLLALVDDSGNIVTNETVKLTEAQARGILELRLQRLTGLERDKINAELD 485 Query: 453 NLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ 512 + A ++ +L S ++ +A E+R V+ + E+ + Sbjct: 486 EVAARIRELLEILASHPRRMELMADELRAVRAQIASP--------RLSEIVDGLADQDDE 537 Query: 513 AMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRIL 564 +++E + V ++ G++ R+ S+ + ++ D + + +AHT +L Sbjct: 538 SLVEPGLMVVTLTRDGYVKRTPLETFRAQNRGGRGRSSANMRQDDVVIRSFNAHTHQWVL 597 Query: 565 LLSTDG-----KAYTLP-AGNLLSGRGHGEAIQLLIDLNHNQDIVTAF--------VYDS 610 ++ G K + LP AG GR + +QL ++ VTA ++D+ Sbjct: 598 FFTSRGMAFREKVWKLPEAGPTARGRSLRQLLQL-----REEEYVTAVLPLPQDEGLWDN 652 Query: 611 TCKLLVVSSKGN 622 L+ +S+GN Sbjct: 653 -LHLVFATSEGN 663 >gi|332293377|ref|YP_004431986.1| DNA gyrase, A subunit [Krokinobacter diaphorus 4H-3-7-5] gi|332171463|gb|AEE20718.1| DNA gyrase, A subunit [Krokinobacter diaphorus 4H-3-7-5] Length = 848 Score = 402 bits (1032), Expect = e-109, Method: Compositional matrix adjust. Identities = 231/609 (37%), Positives = 372/609 (61%), Gaps = 31/609 (5%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 E + ++++ ++ Y+ Y++S I RA+PD+RDG KPVHRR+++ M E+G+ A KK Sbjct: 5 EKLISINIEDEMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMHELGIRASGAHKK 64 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 SARIVGEV+GK HPHGD SVYD++VR+AQ + RY LI GQGNFG++DGDS AA RYTEA Sbjct: 65 SARIVGEVLGKYHPHGDTSVYDAMVRMAQEWSLRYMLIDGQGNFGSVDGDSPAAMRYTEA 124 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 RM +++E +L +D+D VD + +++ EP V P++ P LL NG SGIAVGMAT++P H Sbjct: 125 RMQKISEDMLADIDKDTVDHQLNFDDTLKEPTVLPTRVPGLLINGASGIAVGMATNMPPH 184 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 N+ E+ + A IDN +++I++L+E++ PDFPTGG I + + E+++ GRG +RA Sbjct: 185 NLSEVVDGIHAYIDNNDVTIDELMEHVKAPDFPTGGTIY-GYDGVREAFKTGRGRVVMRA 243 Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314 + EEV +G CI+VTEIPYQV K+ +I+K A++I K+I + IRDES + +++ Sbjct: 244 KATFEEV-KGRECIIVTEIPYQVNKADMIKKTADMINDKKIEGISAIRDESDRNGMRIVY 302 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 R P++++ ++ + +++ F +N L GR P+++ L ++ ++ HR V+ R Sbjct: 303 VIKRDAIPNIVLNKLYKYTALQSSFSVNNIALVNGR-PEMLNLKDMIHHFVEHRHVVVVR 361 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAI 431 R+ + ++ + R IL+GL+IA NIDE+IAIIR N D+ + ++ RF L+E Q AI Sbjct: 362 RTEYELKKAEARAHILEGLIIASDNIDEVIAIIRGSANGDEARQNLIERFKLSEIQAKAI 421 Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491 + +RLR L LE+ +++SE + ++ E + +L +++ + I E++E+K+ + Sbjct: 422 VEMRLRQLTGLEQDKLRSEYEEIMKTIEDLKDILAKKERRMSIIREELQEIKDKY----- 476 Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSH------SVDLSAL 543 G R + E + D + +I + + + ISN G+I+ SL + V A Sbjct: 477 -GDERRSVIEYAGGDVSITD--LIPDKKVVITISNAGYIKRTSLTEYKTQNRGGVGTKAS 533 Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKA-----YTLPAGNLLSGRGHGEAIQLLIDLNH 598 + D L+ +L + GK + +P G+ S G AIQ LI++ Sbjct: 534 TTRNEDFLEHLFVGTNHQYMLFFTQKGKCFWMRVFEIPEGSKTS---KGRAIQNLINIEQ 590 Query: 599 NQDIVTAFV 607 + D V AFV Sbjct: 591 D-DEVKAFV 598 >gi|319744965|gb|EFV97294.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus agalactiae ATCC 13813] Length = 819 Score = 402 bits (1032), Expect = e-109, Method: Compositional matrix adjust. Identities = 235/638 (36%), Positives = 375/638 (58%), Gaps = 39/638 (6%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 ++N+ V+L ++ ++ YA+S I RA+PD+RDG KPVHRRI++ M+E+G+ K Sbjct: 3 DKNLVDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHK 62 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSARI G+V+GK HPHGD S+Y+++VR+AQ + R+ L+ G GNFG++DGD AAA RYTE Sbjct: 63 KSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTE 122 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 ARM+++A +L+ ++++ VDF+D Y+ + EP+V P++FPNLL NG +GIAVGMAT+IP Sbjct: 123 ARMSKIALEMLRDINKNTVDFQDNYDGSEREPLVLPARFPNLLVNGATGIAVGMATNIPP 182 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E +A ++DNP+++ +L+E I GPDFPTG +++ R I +Y G+G +R Sbjct: 183 HNLGESIDAVKLVMDNPDVTTRELMEVIPGPDFPTGALVM-GRSGIHRAYETGKGSIVLR 241 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312 +R +E G IVVTE PY V K+++ E I L KRI + +RDES+ E VR V Sbjct: 242 SRTEIETTSNGKERIVVTEFPYGVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGVRFV 301 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 + + R ++++ ++F L+ ++T F NM + G VP+++ L I+ ++ H++EV+ Sbjct: 302 IEVR-RDASANVILNNLFKLTSLQTNFSFNMLAIEKG-VPKILSLRQIIDNYIEHQKEVI 359 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVD 429 RR+ F + R IL+GLL+A ++DE+I IIRN + + ++SRF L+E Q Sbjct: 360 VRRTQFDKAKAEARAHILEGLLVALDHLDEVITIIRNSETDTIAQAELMSRFELSERQSQ 419 Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489 AIL++RLR L LE +I+SE ++LLA + +L ++ I E+ EVK K Sbjct: 420 AILDMRLRRLTGLERDKIQSEYNDLLALIADLADILAKPERVVTIIKEEMDEVKR---KY 476 Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSVDLS 541 D R EV + + +IE+E + + +SN+G+I+ L K + Sbjct: 477 ADARRTELMVGEVL----SLEDEDLIEEEDVLITLSNKGYIKRLAQDEFRAQKRGGRGIQ 532 Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLLSGRGH 586 D ++ + T D +L + G+ Y LP NLL Sbjct: 533 GTGVNNDDFVRELVSTSTHDTVLFFTNLGRVYRLKAYEIPEYGRTAKGLPIVNLLK-LDE 591 Query: 587 GEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAF 624 GE IQ +I+ +D+ + + +T + +V + + F Sbjct: 592 GETIQTIINA-RKEDVANKYFFFTTQQGIVKRTSVSEF 628 >gi|315126544|ref|YP_004068547.1| DNA gyrase, subunit A, type II topoisomerase [Pseudoalteromonas sp. SM9913] gi|315015058|gb|ADT68396.1| DNA gyrase, subunit A, type II topoisomerase [Pseudoalteromonas sp. SM9913] Length = 899 Score = 402 bits (1032), Expect = e-109, Method: Compositional matrix adjust. Identities = 247/636 (38%), Positives = 368/636 (57%), Gaps = 67/636 (10%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 V++ L+ YL YA+S I RA+PD+RDG KPVHRR++ AM+E+ D+ +KKSAR+V Sbjct: 11 VNIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELSNDWNKPYKKSARVV 70 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG++DGDSAAA RYTE RM ++ Sbjct: 71 GDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEVRMAKM 130 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 + +L ++++ VDF Y+ + P V P+K PNLL NG+SGIAVGMAT+IP HN+ E+ Sbjct: 131 SHELLADLEKETVDFVPNYDGTEQIPDVLPTKIPNLLVNGSSGIAVGMATNIPPHNLTEV 190 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 LALI NPE++I +L++YI GPDFPT II ++ I ++Y+ GRG +RAR +E Sbjct: 191 VNGCLALIQNPELTITELMDYIPGPDFPTAAII-NGKKGIEQAYQTGRGKVYMRARADIE 249 Query: 260 -EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKN 317 + G I+V EIPYQV K+RLIEKIAEL+ K+I + +RDES +D +RIV+ K Sbjct: 250 TDEKTGRETIIVHEIPYQVNKARLIEKIAELVKDKKIEGISALRDESDKDGMRIVIEIKR 309 Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377 + ++++ +++ + ++T F +NM L + P+ L +L+E++ HRREV+ RR+ Sbjct: 310 GDVG-EVILNNLYSQTQLQTVFGMNMVAL-INNQPKCFNLKEMLEEFIIHRREVVTRRTV 367 Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS------------------ 419 F ++ R L+GL IA NID II +IR P V+ Sbjct: 368 FDLRKARDRAHTLEGLAIALANIDPIIELIRKSPTPAEAKVALTARPWELGNVKAMLDKA 427 Query: 420 --------------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKE 459 ++ ++E Q AIL+LRL L LE +I +E +LL Sbjct: 428 GEDNVARPDWLASELGIRDGQYYISEQQAQAILDLRLHKLTGLEHEKILTEYQSLLELIA 487 Query: 460 KIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEP 519 ++ +L + ++ I E+ E+KE + RRT E++ A + +I +E Sbjct: 488 ELLFILANPERLMEVIRDELVEIKEQYGDE-----RRT---EINAAAHDISLEDLINEEN 539 Query: 520 ITVVISNRGWIR--SLKSHSVDL------SALHFKEGDSLKIALHAHTTDRILLLSTDG- 570 + V +S+ G+++ +L + SA K+ D ++ L A+T D IL ST G Sbjct: 540 VVVTLSHEGYVKYQALTDYEAQRRGGKGKSATKMKDEDFIERLLVANTHDTILCFSTAGR 599 Query: 571 ----KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602 K Y LP L S G+ I L+ L ++ I Sbjct: 600 LYWLKVYQLP---LASRAARGKPIVNLLPLEADERI 632 >gi|238915982|ref|YP_002929499.1| DNA gyrase subunit A [Eubacterium eligens ATCC 27750] gi|238871342|gb|ACR71052.1| DNA gyrase subunit A [Eubacterium eligens ATCC 27750] Length = 839 Score = 402 bits (1032), Expect = e-109, Method: Compositional matrix adjust. Identities = 241/677 (35%), Positives = 392/677 (57%), Gaps = 42/677 (6%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 + V+ V ++ +E Y+ YA+S I RA+PD+RDG KPV RRI+++M E+ +K Sbjct: 7 DKVQEVDMQKTMENYYIDYAMSVIASRALPDVRDGLKPVQRRILYSMIELNNGPDKPHRK 66 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 ARIVG+ +GK HPHGD S+Y++LV+LAQ F RYPL+ G GNFG++DGD AAA RYTEA Sbjct: 67 CARIVGDTMGKYHPHGDSSIYEALVKLAQDFNTRYPLVDGHGNFGSVDGDGAAAMRYTEA 126 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 R+++++ + + +++D VDF ++E + EP V PS++PNLL NGTSGIAVGMAT+IP H Sbjct: 127 RLSKISMEMTRDLNKDTVDFIPNFDETEKEPTVLPSRYPNLLCNGTSGIAVGMATNIPPH 186 Query: 195 NVQEICEAALALIDNP-----EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249 N++E+ A + +IDN + +IE++L+ + GPDFPTGG I+ + I E+YR GR Sbjct: 187 NLREVIGAVVKMIDNKVEEDRDTTIEEILDIVKGPDFPTGGTII-GKLGIEEAYRTGRAK 245 Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309 +VRA +E + G IVVTE+PY V K++LIEKIAEL+ K+I + D+RDES + Sbjct: 246 IKVRAVTNIEPMNNGKNRIVVTELPYMVNKAKLIEKIAELVRDKKIDGITDLRDESDREG 305 Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369 + R ++P++++ ++ + ++ F + M L + P+V+ L +LK +L H+ Sbjct: 306 MRIAIELRRDVNPNIVLNQLYKHTQLQDTFGVIMLAL-VDNQPKVLNLYDMLKYYLLHQE 364 Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTEN 426 EV+ RR+ F + + R IL+GL+IA NID +I+IIR N K +++ F+L+E Sbjct: 365 EVVTRRTKFDLNKAEERAHILEGLMIALDNIDRVISIIRGSANVQIAKESLIAEFALSEA 424 Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486 Q AI+++RLR+L LE ++++EL L + ++ ++L K I EI E+ + + Sbjct: 425 QAQAIVDMRLRALTGLERSKLEAELKELHEKIKEYKAILADKKLLLGVIKNEISEIADKY 484 Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD------- 539 RRT+ + + + +I EP + +N G+++ + + Sbjct: 485 GDD-----RRTS---IGYDEYDISMEDLIPDEPCVIARTNLGYVKRMTPDNFKSQHRGGK 536 Query: 540 -LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDL 596 + + + D +K + + + G+AY L A + S G AI L+ L Sbjct: 537 GIKGMQTIDDDYIKDLFMTTSHHVLTFFTNTGRAYKLKAYEIPEASRTSRGTAIINLLQL 596 Query: 597 NHNQDIVTAFV------YDSTCKLLVVSSKGNAFIVEESEI--IANTRK-GKTFLKVSSE 647 + I TA V T L + + KG IV+++ + AN RK G + + + Sbjct: 597 APGETI-TAVVPVKIDTLQDTDYLFMATKKG---IVKKTPVKEFANIRKTGIQAINLRED 652 Query: 648 EKMKLVVKVTGDHVAVV 664 +++ + VK+T D ++ Sbjct: 653 DEL-IEVKLTDDQAEIL 668 >gi|22537121|ref|NP_687972.1| DNA gyrase subunit A [Streptococcus agalactiae 2603V/R] gi|76787978|ref|YP_329676.1| DNA gyrase subunit A [Streptococcus agalactiae A909] gi|76798726|ref|ZP_00780946.1| DNA gyrase, A subunit [Streptococcus agalactiae 18RS21] gi|77411034|ref|ZP_00787389.1| DNA gyrase, A subunit [Streptococcus agalactiae CJB111] gi|22533982|gb|AAM99844.1|AE014235_17 DNA gyrase, A subunit [Streptococcus agalactiae 2603V/R] gi|76563035|gb|ABA45619.1| DNA gyrase, A subunit [Streptococcus agalactiae A909] gi|76585927|gb|EAO62465.1| DNA gyrase, A subunit [Streptococcus agalactiae 18RS21] gi|77162958|gb|EAO73914.1| DNA gyrase, A subunit [Streptococcus agalactiae CJB111] Length = 819 Score = 402 bits (1032), Expect = e-109, Method: Compositional matrix adjust. Identities = 235/638 (36%), Positives = 375/638 (58%), Gaps = 39/638 (6%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 ++N+ V+L ++ ++ YA+S I RA+PD+RDG KPVHRRI++ M+E+G+ K Sbjct: 3 DKNLVDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHK 62 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSARI G+V+GK HPHGD S+Y+++VR+AQ + R+ L+ G GNFG++DGD AAA RYTE Sbjct: 63 KSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTE 122 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 ARM+++A +L+ ++++ VDF+D Y+ + EP+V P++FPNLL NG +GIAVGMAT+IP Sbjct: 123 ARMSKIALEMLRDINKNTVDFQDNYDGSEREPLVLPARFPNLLVNGATGIAVGMATNIPP 182 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E +A ++DNP+++ +L+E I GPDFPTG +++ R I +Y G+G +R Sbjct: 183 HNLGESIDAVKLVMDNPDVTTRELMEVIPGPDFPTGALVM-GRSGIHRAYETGKGSIVLR 241 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312 +R +E G IVVTE PY V K+++ E I L KRI + +RDES+ E VR V Sbjct: 242 SRTEIETTSNGKERIVVTEFPYGVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGVRFV 301 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 + + R+ ++++ ++F L+ ++T F NM + G VP+++ L I+ ++ H++EV+ Sbjct: 302 IEVR-RAASANVILNNLFKLTSLQTNFSFNMLAIEKG-VPKILSLRQIIDNYIEHQKEVI 359 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVD 429 RR+ F R IL+GLL+A ++DE+I IIRN + + ++SRF L+E Q Sbjct: 360 VRRTQFDKAKAGARAHILEGLLVALDHLDEVITIIRNSETDTIAQAELMSRFELSERQSQ 419 Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489 AIL++RLR L LE +I+SE ++LLA + +L ++ I E+ EVK K Sbjct: 420 AILDMRLRRLTGLERDKIQSEYNDLLALIADLADILAKPERVVTIIKEEMDEVKR---KY 476 Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSVDLS 541 D R EV + + +IE+E + + +SN+G+I+ L K + Sbjct: 477 ADARRTELMIGEVL----SLEDEDLIEEEDVLITLSNKGYIKRLAQDEFRAQKRGGRGIQ 532 Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLLSGRGH 586 D ++ + T D +L + G+ Y LP NLL Sbjct: 533 GTGVNNDDFVRELVSTSTHDTVLFFTNLGRVYRLKAYEIPEYGRTAKGLPIVNLLK-LDE 591 Query: 587 GEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAF 624 GE IQ +I+ +D+ + + +T + +V + + F Sbjct: 592 GETIQTIINA-RKEDVANKYFFFTTQQGIVKRTSVSEF 628 >gi|262369531|ref|ZP_06062859.1| type IIA topoisomerase [Acinetobacter johnsonii SH046] gi|262315599|gb|EEY96638.1| type IIA topoisomerase [Acinetobacter johnsonii SH046] Length = 993 Score = 402 bits (1032), Expect = e-109, Method: Compositional matrix adjust. Identities = 234/613 (38%), Positives = 356/613 (58%), Gaps = 67/613 (10%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 ++ +++ L+ YL YA+S I RA+PD+RDG KPVHRR+++AM E+G D+ A+KKSA Sbjct: 6 IRPIAIEDELKNSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMHELGNDYNKAYKKSA 65 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD +VY+++VR+AQ F RY L+ GQGNFG++DGDSAAA RYTE RM Sbjct: 66 RVVGDVIGKYHPHGDSAVYETIVRMAQDFSLRYQLVDGQGNFGSVDGDSAAAMRYTEVRM 125 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 ++ IL +++D VD+ D Y+ + P V P++ PNLL NGT+GIAVGMAT++ HN+ Sbjct: 126 RKLTHEILADLEKDTVDWEDNYDGSERIPQVMPTRIPNLLINGTTGIAVGMATNMAPHNM 185 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ A LA +NP ISIE L+EYI GPDFPTGGII + IV++YR G+G +R ++ Sbjct: 186 TEVVNACLAYAENPNISIEGLMEYISGPDFPTGGIIY-GKAGIVDAYRTGKGRLHIRGKY 244 Query: 257 CVEEVGR-GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315 EE + G IV TEIPYQV K++ IE+IAEL+ K++ + ++RDES +D + Sbjct: 245 HFEEDQKTGRTTIVFTEIPYQVNKAKTIERIAELVKEKKLEGISELRDESDKDGMRIAID 304 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 R + ++++ ++F + +E F +NM L G+ P++M L I+ ++ HR+EV+ RR Sbjct: 305 LKRGENAEVVVNNLFQNTQLENSFSINMVCLDNGQ-PKLMNLKDIVAAFIRHRQEVVTRR 363 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN-------------------------- 409 + F ++ R IL+GL +A NID II I+ Sbjct: 364 TMFELRKARERGHILEGLTVALANIDAIIETIKTSANPAEARERLQAGEWAAGNVIALLE 423 Query: 410 --------------EDKPKPVMVSR--FSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453 ED +P + + L+ QV AIL LRL L LE+ ++++E Sbjct: 424 KAGSVSVRPDEIEGEDPSRPFGLDGQIYRLSPAQVGAILELRLHRLTGLEQDKLQAEYTE 483 Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIR-EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ 512 +L + ++ ++LN +N + I+ E+ I + D RRT E SR D + ++ Sbjct: 484 ILGQIAELTAILND----FNLLMAVIKEELALILQQYGDA--RRTAIVE-SRIDFS--RE 534 Query: 513 AMIEKEPITVVISNRGWIRS--LKSHSVDL------SALHFKEGDSLK--IALHAHTTDR 562 +I +E + + +S G+ ++ L ++ SA KE D ++ I H T Sbjct: 535 DLIPEEQVVLTVSKTGYAKTQPLSDYAAQRRGGRGKSATSMKEDDYIQHLIVTSNHAT-- 592 Query: 563 ILLLSTDGKAYTL 575 +L + GK Y L Sbjct: 593 VLCFTNVGKVYRL 605 >gi|20090441|ref|NP_616516.1| DNA topoisomerase (ATP-hydrolyzing), subunit A [Methanosarcina acetivorans C2A] gi|19915456|gb|AAM04996.1| DNA topoisomerase (ATP-hydrolyzing), subunit A [Methanosarcina acetivorans C2A] Length = 929 Score = 402 bits (1032), Expect = e-109, Method: Compositional matrix adjust. Identities = 258/721 (35%), Positives = 411/721 (57%), Gaps = 43/721 (5%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 V A+ + ++ Y+ YA+S I RA+PD RDG KPVHRRI+ +M E G+ +KKSA Sbjct: 73 VTAILIDDEMKRSYINYAMSVIVGRALPDARDGLKPVHRRILFSMKESGITHDKPYKKSA 132 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+V+GK HPHGD +VYDS+VR+ Q F RYPLI GQGNFG+IDGD AAA RYTE RM Sbjct: 133 RVVGDVLGKYHPHGDAAVYDSIVRMVQDFSLRYPLIDGQGNFGSIDGDEAAAMRYTEVRM 192 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 ++AE +L ++++ V FR Y+ EP V P+K PNLL NG++GIAVGMAT++ HN+ Sbjct: 193 DRIAEEMLTDIEKETVPFRPNYDGSLEEPEVLPAKLPNLLINGSTGIAVGMATNMAPHNI 252 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ + L LIDNPE + +L+ + GPDFPTG I+ + I +Y GRG ++RA Sbjct: 253 SEVIDGTLMLIDNPETPVSELMTVVKGPDFPTGAHILGT-AGIRSAYTTGRGPVKIRAVA 311 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFP 315 ++E+ + I+VTE+PYQV K+R+IE IA+L+ K I + D+RDES E +R+V+ Sbjct: 312 EIQELKKDREQIIVTELPYQVNKARMIENIAQLVREKVISGISDLRDESDREGIRVVI-E 370 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 ++ + +++ ++ + MET F + +N+ + PQ + L +L+ +L +R E++ +R Sbjct: 371 LSKGTNARVVLNQLYKHTQMETTFGV-INLALVDGKPQELNLKQLLEIYLEYRMEIVQKR 429 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432 + + ++ + R IL+GL IA NID ++A+I+ N D+ + ++ F+L E Q AIL Sbjct: 430 TLYDLKKSEERAHILEGLRIALDNIDAVVALIKGSANADEARQGLMDNFTLDEVQAKAIL 489 Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492 ++RL+ L LE +I EL+NL+ ++ +L S + ++ I E+ +KE + Sbjct: 490 DMRLQRLTGLETKKILEELENLIKLIAELKKILESDELKYEIIRTELLGLKEKYGDV--- 546 Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSVD------LSALH 544 RRT + + + +I + + V I+N G+I+ L ++S+ + + Sbjct: 547 --RRTKIVHYT---EEVTDEDLIPEADVVVTITNSGYIKRIPLDTYSMQRRGGRGIIGME 601 Query: 545 FKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDLNHN 599 KE D ++ + T + IL + G K Y +P G S + G+AI L++L Sbjct: 602 MKEEDFVENLFISSTHNYILFFTNRGRLYWQKVYEIPEG---SRQSRGKAIVNLLELREG 658 Query: 600 QDIVTAFV----YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655 + +V A + + LL+ + G SE N RK + VS +E +LV Sbjct: 659 E-MVNAMIPVKEFAEDRYLLMATRAGTTKKTPLSE-FRNPRKA-GIIAVSLDEGDELVKV 715 Query: 656 VTGD---HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTW 711 + D V +V + K + FS D + M R +GVR DG +V+ + + T Sbjct: 716 LLTDGKQEVLMVSKKGKAIRFSEDDVRPMGRTARGVRGMIL-DGPEDEVVSMDLVDETTT 774 Query: 712 I 712 + Sbjct: 775 L 775 >gi|3128378|gb|AAC16230.1| DNA gyrase subunit a [Rhodobacter capsulatus SB 1003] Length = 883 Score = 402 bits (1032), Expect = e-109, Method: Compositional matrix adjust. Identities = 234/601 (38%), Positives = 353/601 (58%), Gaps = 51/601 (8%) Query: 30 YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89 YL YA+S I RAIPDLRDG KP HRRI++AM E G ++KSAR VG+V+GK HPH Sbjct: 5 YLDYAMSVIVSRAIPDLRDGLKPAHRRILYAMHETGNTHDKPYRKSARPVGDVMGKYHPH 64 Query: 90 GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDE 149 GD ++YD+LVR+AQ F PL+ GQGNFG++DGDSAAA RYTE RM + A +L +++ Sbjct: 65 GDAAIYDALVRMAQDFSMSLPLLDGQGNFGSMDGDSAAAMRYTEVRMDKPAAFLLADIEK 124 Query: 150 DAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDN 209 D VDF+D Y+ +D EP V P++FPN+L NG GIAVGMAT+IP HN+ E+ +A LALI+N Sbjct: 125 DTVDFQDNYDGKDKEPTVLPARFPNMLVNGAGGIAVGMATNIPPHNLGEVIDATLALIEN 184 Query: 210 PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIV 269 P++S E L++Y+ GPDFPTG I+ R ++Y GRG +RA+ +EE+ + + I+ Sbjct: 185 PDLSSEALMDYVPGPDFPTGAQIM-GRGGARKAYLEGRGSVIIRAKTRIEEIRKDRFAII 243 Query: 270 VTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE-DVRIVLFPKNRSLDPDLLMES 328 + EIPYQV K+ +IEK+A+L+ K++ + I DES VR+V+ K R D+++ Sbjct: 244 IDEIPYQVNKATMIEKMADLVREKKLEGIASIADESDRVGVRVVIELK-RDATADVVLNQ 302 Query: 329 IFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVE 388 ++ + ++T F NM L+ GR P+ + L L ++A R EV+ RR+++ ++ R Sbjct: 303 LYRFTPLQTSFGCNMLALNGGR-PEQLTLRDFLSHFIAFREEVVARRTAYELRKARERSH 361 Query: 389 ILKGLLIAYLNIDEIIAIIRNEDKPKP----VMVSR------------------------ 420 IL GL +A N+DE++A IR+ P +M R Sbjct: 362 ILCGLAVAVSNVDEVVATIRSSKDPAEARDRLMERRWPAHEIVEYLRLIDDPLHPVNDDG 421 Query: 421 -FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479 ++L+E Q AIL+LRL+ L + ++ EL L + ++L S ++ IA E+ Sbjct: 422 TYNLSEVQARAILDLRLQRLTAMGVQEVTDELAELAGKIRDYLAILASRERIMAIIATEL 481 Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------R 531 REV+ + RRT + + + +IE+E + V I++ G+I R Sbjct: 482 REVRAAHAVP-----RRTEIVDWA---GDLDDEDLIEREDMVVTITSGGYIKRTPLAEFR 533 Query: 532 SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL-LSGR-GHGEA 589 + + L+++ KE D + A+T ++L +TDG Y+L L L+GR G+A Sbjct: 534 AQRRGGKGLASMATKEDDVVTTLFVANTHTQLLFFTTDGMVYSLKCWRLPLAGRTSKGKA 593 Query: 590 I 590 I Sbjct: 594 I 594 >gi|305677637|pdb|2XKJ|E Chain E, Crystal Structure Of Catalytic Core Of A. Baumannii Topo Iv (Pare-Parc Fusion Truncate) Length = 767 Score = 401 bits (1031), Expect = e-109, Method: Compositional matrix adjust. Identities = 203/463 (43%), Positives = 307/463 (66%), Gaps = 8/463 (1%) Query: 27 EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86 E+ YL YA+ I +RA+P + DG KPV RRI++AMSE+GL KKSAR VG+V+GK Sbjct: 283 EQAYLNYAMYVIMDRALPHISDGLKPVQRRIVYAMSELGLKSSGKPKKSARTVGDVLGKY 342 Query: 87 HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQVAELILQ 145 HPHGD + Y+++V +AQPF RYPLI GQGN+G+ D S AA RYTEA+++ +EL+L Sbjct: 343 HPHGDSACYEAMVLMAQPFSYRYPLIEGQGNWGSPDDPKSFAAMRYTEAKLSAYSELLLS 402 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 + + +++D ++ EP+ P++ PN+L NGT+GIAVGMAT IP HN++E+ + +A Sbjct: 403 ELGQGTSEWQDNFDGSLKEPITLPARVPNILLNGTTGIAVGMATDIPPHNLREVVKGTIA 462 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265 LI NP+ S EKL EYI PD PT I+ E +++ GRG +R+RA + +E+ Sbjct: 463 LIRNPQTSDEKLAEYIPAPDLPTKAEIITPPEELLKIQTTGRGSYRMRAVYTIEKNE--- 519 Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFPKNRSLDPD 323 IV+TE+PYQV S++I +IA+ + AK++PL+ D+RDES + R+V+ ++ +D + Sbjct: 520 --IVITELPYQVSGSKVITQIADQMQAKKLPLVVDVRDESDHENPTRLVIVLRSNRIDAE 577 Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383 +M +F +D+E+ + +N+N++ PQV + IL EW+ R++ + RR + + I Sbjct: 578 AVMSHLFATTDLESSYRVNLNMIGEDGRPQVKSIRRILLEWIEIRKKTVTRRLQYHLNRI 637 Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLE 443 ++R+ IL GLLIAYL+ID +I IIR ED+PKPV++ F++ E Q +AIL L+LR L KLE Sbjct: 638 EKRLHILAGLLIAYLDIDTVIRIIREEDQPKPVLMEHFNIDEIQAEAILELKLRHLAKLE 697 Query: 444 EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486 E +I+ E D L A+ I L + + N I E++E + F Sbjct: 698 EMEIRHEQDELSAKAAIIREQLENPESLKNLIISELKEDAKKF 740 >gi|145630895|ref|ZP_01786672.1| DNA gyrase subunit A [Haemophilus influenzae R3021] gi|144983555|gb|EDJ91023.1| DNA gyrase subunit A [Haemophilus influenzae R3021] Length = 880 Score = 401 bits (1031), Expect = e-109, Method: Compositional matrix adjust. Identities = 251/659 (38%), Positives = 376/659 (57%), Gaps = 64/659 (9%) Query: 13 VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72 ++ ++ V++ L+ YL YA+S I RA+PD+RDG KPVHRR++ +M G + Sbjct: 5 IQSSITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDREGNTANKKY 64 Query: 73 KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132 KSAR+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG+IDGD+ AA RYT Sbjct: 65 VKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRYT 124 Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192 E RM ++ + +L +D++ V+F Y+ E P V P++ P LLANG+SGIAVGMAT+IP Sbjct: 125 EVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPALLANGSSGIAVGMATNIP 184 Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252 HN+ E+ LA IDN EI+I++L+++I GPDFPT +I R+ I E+YR GRG V Sbjct: 185 PHNLNEVLNGCLAYIDNNEITIDELMQHIPGPDFPTAALI-NGRKGIEEAYRTGRGKVYV 243 Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRI 311 RAR VE +G I+V+E+PYQV K++L+EKIAELI K+I + +I D S E +RI Sbjct: 244 RARATVETNEKGREQIIVSELPYQVNKAKLVEKIAELIREKKIEGISNITDLSNKEGIRI 303 Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371 + K R ++++ ++ L+ M+ F +NM L G+ P++ L I++ ++ HRREV Sbjct: 304 EIDIK-RDAVGEVVLNHLYSLTQMQVTFGINMVALDHGQ-PRLFNLKEIIESFVLHRREV 361 Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS------------ 419 + RRS F ++ R IL+GL +A NIDE+IAIIRN + S Sbjct: 362 VTRRSIFELRKARERTHILEGLAVARSNIDEMIAIIRNSKNREEAATSISSRSWTLHSDI 421 Query: 420 ----------------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457 ++ L+ QV+AIL LRL L + ++ E + LL + Sbjct: 422 INLLDLSARPDELEENLGIQGEQYYLSPAQVNAILELRLHRLTGIAFEEVIKEYEELLVK 481 Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517 + +L+S ++ I E+ EVK F G R T E++ A + +I + Sbjct: 482 IADLLHILSSAERLMEVIREELEEVKAQF------GDDRLT--EITAASGDIDLEDLIAQ 533 Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569 E + V +S+ G+++ + + SA KE D ++ L A+T D IL S+ Sbjct: 534 EDVVVTLSHEGYVKYQPLTDYEAQRRGGKGKSATKMKEEDFIEKLLVANTHDTILCFSSR 593 Query: 570 GKAYTLPAGNL-LSGRG-HGEAIQLLIDLNHNQDI-----VTAFVYDSTCKLLVVSSKG 621 G+ Y L L + RG G I ++ L N+ I V+A+ D K +V+++ G Sbjct: 594 GRLYWLKVYQLPQASRGARGRPIVNILPLQENERITAILPVSAYEED---KFVVMATAG 649 >gi|240949001|ref|ZP_04753355.1| DNA gyrase subunit A [Actinobacillus minor NM305] gi|240296588|gb|EER47206.1| DNA gyrase subunit A [Actinobacillus minor NM305] Length = 885 Score = 401 bits (1031), Expect = e-109, Method: Compositional matrix adjust. Identities = 238/606 (39%), Positives = 348/606 (57%), Gaps = 55/606 (9%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 +++ VS+ L+ YL YA+S I RA+PD+RDG KPVHRR++ +M + F K Sbjct: 6 KDITPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTFNRPHVK 65 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 SAR+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG+IDGD+ AA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRYTEV 125 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 RM ++ + +L +D++ VD+ Y+ ++ P V P+K P LL NG+SGIAVGMAT+IP H Sbjct: 126 RMQKITQELLTDLDKETVDYSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATNIPPH 185 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 N+ E+ + LA I++ +ISIE+L+ +I GPDFPTG II R+ I E+YR GRG VRA Sbjct: 186 NLNEVLDGCLAYIEDEQISIEELMRHIPGPDFPTGAII-NGRKGIEEAYRTGRGKVYVRA 244 Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314 + VE +G IVVTE+PYQV K++LIEKIAEL+ K+I + I D S + ++ Sbjct: 245 KASVETTDKGREQIVVTELPYQVNKAKLIEKIAELVKDKKIEGISKIDDYSDKKGISIVI 304 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 R ++++ ++ L+ M+ F +NM L G+ P+V+ L I++ ++ HRREV+ R Sbjct: 305 EVKRDAVAEVVLNHLYSLTQMQVTFGINMVALDNGQ-PKVLNLKQIIEAFVKHRREVVTR 363 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN------------------------- 409 R+ F ++ R IL+GL IA NID +I +IR Sbjct: 364 RTIFELRKARERAHILEGLAIALANIDPVIELIRASKTADEAREGLLARAWELGNVAPML 423 Query: 410 ----------EDKPKPVMV--SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457 ED P+ + V ++ L+E Q AIL LRL L LE +I E LL E Sbjct: 424 EAAGVDASRPEDLPEELGVRDGKYFLSEAQARAILELRLHRLTGLEHEKIVDEYKALLVE 483 Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517 ++ +L S ++ I E+ VK F RRT E++ A + +I + Sbjct: 484 IGELLHILTSPERLMEVIREELERVKSEFGDE-----RRT---EITAASGDINIEDLIAQ 535 Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569 E + V +S+ G+++ + + SA KE D ++ L A+T D IL S+ Sbjct: 536 EDVVVTLSHAGYVKYQPLSDYEAQRRGGKGKSATKMKEDDFIEKLLVANTHDTILCFSSR 595 Query: 570 GKAYTL 575 G+ Y L Sbjct: 596 GRLYQL 601 >gi|89898308|ref|YP_515418.1| DNA gyrase subunit A [Chlamydophila felis Fe/C-56] gi|89331680|dbj|BAE81273.1| DNA gyrase subunit A [Chlamydophila felis Fe/C-56] Length = 830 Score = 401 bits (1031), Expect = e-109, Method: Compositional matrix adjust. Identities = 261/722 (36%), Positives = 401/722 (55%), Gaps = 53/722 (7%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 EE + +L ++E YL Y++S I RA+PD+RDG KP RRI+ AM ++ L GA + Sbjct: 5 EEIIVPKNLEEEMKESYLRYSMSVIISRALPDVRDGLKPSQRRILFAMKQLNLTPGAKHR 64 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 K A+I G+ G HPHG+ +Y +LVR+AQ + RYPL+ GQGNFG+IDGD AAA RYTE Sbjct: 65 KCAKICGDTSGDYHPHGESVIYPTLVRMAQNWAMRYPLVDGQGNFGSIDGDPAAAMRYTE 124 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 AR+T A +++ +D+D VD Y+E EPVVFPSKFPNLL NG+SGIAVGMAT+IP Sbjct: 125 ARLTHSAISLMEDLDKDTVDMVSNYDETKHEPVVFPSKFPNLLCNGSSGIAVGMATNIPP 184 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E+ EA L ++ P+ SIE++LE + GPDFPTGG+I S E I +Y GRG ++R Sbjct: 185 HNLGELIEATLLVLSKPDASIEEILEVMPGPDFPTGGLICGS-EGIRSTYYTGRGKIKLR 243 Query: 254 ARWCVEE-VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRI 311 AR +EE + I++TE+PY V KSRLIE+IA+L+ K + + D+RDES +D +R+ Sbjct: 244 ARLHIEENADKHRENIILTEMPYNVNKSRLIEQIADLVNDKTLAGIHDVRDESDKDGIRV 303 Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371 VL K + ++++ ++ +D++ F NM L +P+ M + ++ W+ HR EV Sbjct: 304 VLELK-KGESSEIVINRLYKFTDVQVTFGANMLALDKN-LPRTMNIHRMISAWIRHRTEV 361 Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQV 428 + RR+ + + + R IL+G L A +D+++ IRN D K ++ F TE Q Sbjct: 362 IRRRTRYELNKAEARAHILEGFLKALSCLDDLVRTIRNSDSKEHAKHQLIENFGFTEQQS 421 Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488 AIL LRL L LE +I+ E D L+ + +L + I E+++++++ Sbjct: 422 VAILELRLYQLTGLESEKIQKEYDELINKIAYYKRVLADEGLVKDIIRNELQDLQKLHKT 481 Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSVDL 540 RRTT E AD + +I EP+ + IS +++ + K + Sbjct: 482 P-----RRTTI-EFD-ADDVRDIEDIITNEPVIITISGDDYVKRMPIKVFREQKRGGHGV 534 Query: 541 SALHFKEG-DSLKIALHAHTTDRILLLSTDGKAY-----TLPAG----------NLLSGR 584 S K+G D LK A T D +L+ + G+ Y LP G N L G Sbjct: 535 SGFDMKKGSDFLKSVYSASTKDYLLIFTNFGQCYWLKVWQLPEGERRAKGKPIINFLEGI 594 Query: 585 GHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR-KGKTFLK 643 GE + ++++ + ++ F++ +T + +V +AF +N R KG L+ Sbjct: 595 RPGEQLAAVLNIKNFEN--AGFLFLATKQGVVKKVSLDAF--------SNPRKKGIRALE 644 Query: 644 VSSEEKMKLVVKVTGDHVAVVGENR--KLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDV 700 + +++ V++T + V+ R + F D++ M R +GVR S K+ V Sbjct: 645 IDEGDELIAAVRITSEEEKVMLFTRLGMAVRFPHDKVRPMGRTARGVRGVSLKNEKDRVV 704 Query: 701 IC 702 C Sbjct: 705 AC 706 >gi|68171271|ref|ZP_00544673.1| DNA gyrase, subunit A [Ehrlichia chaffeensis str. Sapulpa] gi|88657796|ref|YP_507653.1| DNA gyrase subunit A [Ehrlichia chaffeensis str. Arkansas] gi|67999318|gb|EAM85965.1| DNA gyrase, subunit A [Ehrlichia chaffeensis str. Sapulpa] gi|88599253|gb|ABD44722.1| DNA gyrase, A subunit [Ehrlichia chaffeensis str. Arkansas] Length = 898 Score = 401 bits (1031), Expect = e-109, Method: Compositional matrix adjust. Identities = 231/631 (36%), Positives = 360/631 (57%), Gaps = 51/631 (8%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 NV VS+ LE+ YL+YA+S I RAIPD+RDG KPVHRRI+++M + G D+G +KK+ Sbjct: 6 NVIPVSIEQELEDSYLSYAMSVIVSRAIPDIRDGLKPVHRRILYSMYKSGYDYGKPYKKA 65 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 AR+VG+V+GK HPH D ++YDSLVR+AQ F PLI QGNFG+IDGD A+ RYTEAR Sbjct: 66 ARVVGDVMGKYHPHADAAIYDSLVRMAQDFSLLLPLIDSQGNFGSIDGDPPASMRYTEAR 125 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 + + A +L +DED VDFR Y+E + EPVV P++FPN+L NG G+AVGM+T+IPSHN Sbjct: 126 LAKAAHFLLNDIDEDTVDFRPNYDENEVEPVVLPAEFPNILVNGAGGVAVGMSTNIPSHN 185 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 + E+ +A +A IDNPEI+ ++L+ + GPDFPTGG I+ I ++ G+G ++ + Sbjct: 186 LGEVIDACIAYIDNPEITFDELINIVRGPDFPTGGTIL-GDAGIRSAFMTGKGTIIIQGK 244 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE-DVRIVLF 314 +E++ G I++ EIPYQV K++LIE+I ELI K+I + D+RDES + +R+ + Sbjct: 245 THLEDLPSGKQAIIIDEIPYQVNKAKLIERIHELIKEKKIEGILDLRDESNKMGIRVAIE 304 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K + + +++ I L+ + T F +N VL + P+VM L I+ ++ +R+EVL R Sbjct: 305 LK-KQVSHQVILNQILGLTPLRTSFSINTLVLDNNK-PKVMSLPDIISTFVEYRKEVLTR 362 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE------------------------ 410 R+ FR++ + R + G+ IA LNID++IAIIR+ Sbjct: 363 RTQFRLRKVRERAHLYIGMYIAVLNIDKVIAIIRSSRDTAEATKRLLECKWDALTSVREM 422 Query: 411 -----DKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLL 465 D V+ + LT QV +IL ++L+ L LE+ +++ +L ++++ ++ LL Sbjct: 423 IELVADSKSIVIDNVCQLTGVQVKSILEMKLQRLTNLEKEKLELDLKSMVSMIKQYTELL 482 Query: 466 NSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVIS 525 + + I +E+K + RRTT + + T + +I KE + V ++ Sbjct: 483 KNKESLLQLIKDGFKEIKAKLAVP-----RRTT---IDYSHFETDIEDLIPKEDMVVTVT 534 Query: 526 NRGWIRSLKSHSVDLS--------ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPA 577 G+I+ K + KE D + +T +L S G+ Y L Sbjct: 535 MSGYIKRAKLSNYRAQKRGGKGRIGQAIKEEDVITNLFVVNTHTSVLFFSNIGRVYKLKV 594 Query: 578 GNLLSGR--GHGEAIQLLIDLNHNQDIVTAF 606 L G G ++ + L+ N+ I + Sbjct: 595 YKLPLGEPTSRGRSLVNIFPLSENESITSVM 625 >gi|62185122|ref|YP_219907.1| DNA gyrase subunit A [Chlamydophila abortus S26/3] gi|62148189|emb|CAH63946.1| DNA gyrase subunit A [Chlamydophila abortus S26/3] Length = 830 Score = 401 bits (1031), Expect = e-109, Method: Compositional matrix adjust. Identities = 262/722 (36%), Positives = 403/722 (55%), Gaps = 53/722 (7%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 EE + +L ++E YL Y++S I RA+PD+RDG KP RRI++AM ++ L GA + Sbjct: 5 EEIIVPKNLEEEMKESYLRYSMSVIISRALPDVRDGLKPSQRRILYAMKQLNLTPGAKHR 64 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 K A+I G+ G HPHG+ +Y +LVR+AQ + RYPL+ GQGNFG+IDGD AAA RYTE Sbjct: 65 KCAKICGDTSGDYHPHGESVIYPTLVRMAQNWAMRYPLVDGQGNFGSIDGDPAAAMRYTE 124 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 AR+T A +++ +D+D VD Y+E EPVVFPSKFPNLL NG+SGIAVGMAT+IP Sbjct: 125 ARLTHSAIFLMEDLDKDTVDMVSNYDETKHEPVVFPSKFPNLLCNGSSGIAVGMATNIPP 184 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E+ EA L ++ P++SIE++LE + GPDFPTGG+I S E I +Y GRG +VR Sbjct: 185 HNLGELIEATLLVLSKPDVSIEEILEVMPGPDFPTGGLICGS-EGIRSTYYTGRGKIKVR 243 Query: 254 ARWCVEE-VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRI 311 AR VEE + I++TE+PY V KSRLIE+IA+L+ K + + D+RDES +D +R+ Sbjct: 244 ARLHVEENADKHRENIILTEMPYNVNKSRLIEQIADLVNDKTLSGISDVRDESDKDGIRV 303 Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371 VL K + ++++ ++ +D++ F NM L +P+ M + ++ W+ HR EV Sbjct: 304 VLELK-KGESSEVVINRLYKFTDIQVTFGANMLALDKN-LPRTMNIHRMISVWVRHRTEV 361 Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLTENQV 428 + RR+ + + + R IL+G L A +D+++ IRN ++ K ++ +F TE+Q Sbjct: 362 IRRRTRYELNKAEARAHILEGFLKALSCLDDVVHTIRNSESKEHAKHQLIEKFGFTEHQS 421 Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488 AIL LRL L LE +I+ E D L+ + +L + I E++E++++ Sbjct: 422 IAILELRLYQLTGLEAEKIQKEYDELVNKIAYYKRVLADEGLVKDIIRNELQELQKLHKT 481 Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSVDL 540 RRTT AD + +I EP+ + IS +++ + K + Sbjct: 482 P-----RRTTI--EFDADDIRDIEDIITNEPVIITISGDDYVKRMPIKVFREQKRGGHGV 534 Query: 541 SALHFKEG-DSLKIALHAHTTDRILLLSTDGKAY-----TLPAG----------NLLSGR 584 S K+G D LK A T D +L+ + G+ Y LP G N L G Sbjct: 535 SGFDMKKGSDFLKAVYSASTKDYLLIFTNFGQCYWLKVWQLPEGERRAKGKPIINFLEGI 594 Query: 585 GHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR-KGKTFLK 643 GE + ++++ + ++ F++ +T +V +AF +N R KG L+ Sbjct: 595 RPGEQLAAVLNIKNFEN--AGFLFLATKHGVVKKVALDAF--------SNPRKKGIRALE 644 Query: 644 VSSEEKMKLVVKVTGDHVAVVGENR--KLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDV 700 + +++ V +T + V+ R + F D++ M R +GVR S K+ V Sbjct: 645 IDDGDELIAAVHITSEEEKVMLFTRLGMAVRFPHDKVRPMGRTARGVRGVSLKNEKDRVV 704 Query: 701 IC 702 C Sbjct: 705 AC 706 >gi|126736455|ref|ZP_01752196.1| DNA gyrase, A subunit [Roseobacter sp. CCS2] gi|126713993|gb|EBA10863.1| DNA gyrase, A subunit [Roseobacter sp. CCS2] Length = 914 Score = 401 bits (1031), Expect = e-109, Method: Compositional matrix adjust. Identities = 235/612 (38%), Positives = 357/612 (58%), Gaps = 51/612 (8%) Query: 19 AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78 +V++ L+ YL YA+S I RAIPDLRDG KPVHRRII++M E G+ +++KSA+ Sbjct: 25 SVTIEHELKTSYLDYAMSVIVSRAIPDLRDGLKPVHRRIIYSMYEKGITADKSYRKSAKS 84 Query: 79 VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138 VG+V+G HPHGD ++YD+LVR+AQ F PL+ GQGNFG++DGD AAA RYTE+R+ + Sbjct: 85 VGDVMGSYHPHGDSAIYDALVRMAQDFSMSLPLVDGQGNFGSMDGDGAAAMRYTESRLDK 144 Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198 VA+ + + +D VDF D Y+ ++ EP V P+++PN+L NG GIAVGMAT+IP HN+ E Sbjct: 145 VAKYLTDDLLKDTVDFMDNYDGKEREPSVLPARYPNMLVNGAGGIAVGMATNIPPHNLGE 204 Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258 + +A LALID+P++SIE+++EYI PDFPTGGII+ R ++Y GRG VRA+ V Sbjct: 205 VIDATLALIDSPDMSIEEMIEYIPAPDFPTGGIIL-GRTGARKAYIEGRGSVIVRAKTNV 263 Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKN 317 EE+ + + IV+ EIPYQV K+ +I+KIAE K+I + ++DES + VR+V+ K Sbjct: 264 EEIRKDRYAIVINEIPYQVNKAVMIDKIAEAAREKKIEGIAHVQDESDRNGVRVVIELK- 322 Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377 R ++++ +F + M+T F NM L+ G+ P+ + L L ++ R +V+ RR++ Sbjct: 323 RDATAEVVLNQLFRFTPMQTYFGCNMLALNGGK-PEQLTLRAFLAYFIDFREDVVARRTA 381 Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE--------------------------- 410 F ++ R +L GL +A NIDEI+A IR+ Sbjct: 382 FELRKARERAHVLCGLAVAVTNIDEIVATIRSSADATTAREKLMTRKWPAQDILEYIKLI 441 Query: 411 DKPKPVMV--SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSG 468 D P ++L+E Q AIL LRL+ L ++ ++ EL L + + +L S Sbjct: 442 DDPTHTANEDGTYNLSETQARAILELRLQRLTQIGVKEVTDELQELAGKIREYLEILGSR 501 Query: 469 KQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRG 528 ++ I E+ EV+++F+ RRT + S + +IEKE + V +++ G Sbjct: 502 ERIMQIIRDELTEVRDLFAVP-----RRTEIVDWS---GDMEDEDLIEKEDMVVTVTSGG 553 Query: 529 WI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL 580 +I R+ + LS++ KE D + A+T ++L +TDG Y L L Sbjct: 554 YIKRTALADFRAQRRGGKGLSSMATKEEDVVTTLFVANTHTQLLFFTTDGMVYKLKTWRL 613 Query: 581 LSGR--GHGEAI 590 G G+AI Sbjct: 614 PLGSRTAKGKAI 625 >gi|288905329|ref|YP_003430551.1| DNA gyrase A subunit [Streptococcus gallolyticus UCN34] gi|306831410|ref|ZP_07464569.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325978316|ref|YP_004288032.1| DNA gyrase subunit A [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|288732055|emb|CBI13620.1| DNA gyrase A subunit [Streptococcus gallolyticus UCN34] gi|304426470|gb|EFM29583.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325178244|emb|CBZ48288.1| DNA gyrase subunit A [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 818 Score = 401 bits (1031), Expect = e-109, Method: Compositional matrix adjust. Identities = 244/711 (34%), Positives = 408/711 (57%), Gaps = 48/711 (6%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 ++N+ V+L ++ ++ YA+S I RA+PD+RDG KPVHRRI++ M+E+G+ K Sbjct: 3 DKNLIDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHK 62 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSARI G+V+GK HPHGD S+Y+++VR+AQ + R+ L+ G GNFG++DGD AAA RYTE Sbjct: 63 KSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTE 122 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 ARM+++A +L+ ++++ VDF+D Y+ + EP+V PS+FPNLL NG +GIAVGMAT+IP Sbjct: 123 ARMSKIALEMLRDINKNTVDFQDNYDGSEREPLVLPSRFPNLLVNGATGIAVGMATNIPP 182 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E +A ++DNP+++ +L+E + GPDFPTG +++ + I ++Y G+G +R Sbjct: 183 HNLGESIDAVKLVMDNPDVTTRELMEVLPGPDFPTGALVM-GKSGIRKAYETGKGSIVLR 241 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312 +R +E G IVVTE PY V K+++ E I L KRI + +RDES+ E +R + Sbjct: 242 SRTEIETTKSGRERIVVTEFPYGVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGIRFI 301 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 + + R ++++ ++F L+ ++T F NM + G VP+++ L I+ +++ H++EV+ Sbjct: 302 IEVR-RDASANVILNNLFKLTSLQTNFSFNMLAIENG-VPKILSLKQIIVDYIEHQKEVI 359 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVD 429 RR+ F ++R IL+GLL+A ++DE+I+IIRN + + ++SRF L+E Q Sbjct: 360 VRRTEFDKAKAEKRAHILEGLLVALDHLDEVISIIRNSETDVIAQGELMSRFDLSERQSQ 419 Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489 AIL++RLR L LE +I++E D+LLA + +L ++ I E+ ++K K Sbjct: 420 AILDMRLRRLTGLEREKIQAEYDDLLALIADLADILAKPERVVAIIKEEMDDIKR---KY 476 Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSVDLS 541 D R EV + + +IE+E + + +SN+G+I+ L K + Sbjct: 477 ADPRRTELMVGEVL----SLEDEDLIEEEDVLITLSNKGYIKRLAQDEFRAQKRGGRGVQ 532 Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLLSGRGH 586 + D ++ + T D + ++ G+ Y LP NLL Sbjct: 533 GTGVNDDDFVRELVSTSTHDHVYFMTNKGRVYRLKGYEIPEYGRTAKGLPIVNLLK-LDE 591 Query: 587 GEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS 646 GE +Q +I + + D+ L V+ +G +ESE + G L + Sbjct: 592 GEIVQTIISQSGHD--------DNESYLFFVTRQGVVKRTKESEFSNIRQNGLKALNLKD 643 Query: 647 EEKMKLVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSR-GKGVRLQSYKDG 695 +++ V++ G+ ++G + F+ + MSR GVR + ++G Sbjct: 644 GDELINVIRTNGNDDIIIGTKTGYSVRFNESAVRSMSRSATGVRGVNLREG 694 >gi|90407750|ref|ZP_01215928.1| DNA gyrase, A subunit [Psychromonas sp. CNPT3] gi|90311110|gb|EAS39217.1| DNA gyrase, A subunit [Psychromonas sp. CNPT3] Length = 906 Score = 401 bits (1031), Expect = e-109, Method: Compositional matrix adjust. Identities = 241/657 (36%), Positives = 373/657 (56%), Gaps = 61/657 (9%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 +V +++ L+ YL YA+S I RA+PD+RDG KPVHRR++ AM+ + D+ +KKS Sbjct: 7 DVSPINIEDELKNSYLEYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLRNDWNKPYKKS 66 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 AR+VG+VIGK HPHGD +VYD++VR+AQ F RY LI GQGNFG++DGDSAAA RYTE R Sbjct: 67 ARVVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLIDGQGNFGSVDGDSAAAMRYTEIR 126 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 M ++A +L +D++ VDF Y+ + P V P+K PNLL NG+SGIAVGMAT+IP HN Sbjct: 127 MDKIAHELLADLDKETVDFVPNYDGTELIPEVMPTKIPNLLINGSSGIAVGMATNIPPHN 186 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 + E+ + LALI+NP+++I++L+EYI GPDFPT GII R+ I++ Y+ GRG ++RA+ Sbjct: 187 LGEVIDGCLALINNPDLTIDQLIEYIPGPDFPTAGII-NGRKGIIDGYKTGRGKLKIRAK 245 Query: 256 WCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314 VE G I+V E+PYQV K+RLIEKIAEL+ K+I + +RDES +D ++ Sbjct: 246 ARVEVNEKTGRETIIVDELPYQVNKARLIEKIAELVKDKKIEGISALRDESDKDGMRMVI 305 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 R ++++ +++ + M++ F +NM L G+ P+++ L +L ++ HRREV+ R Sbjct: 306 EVKRGEVGEVILNNLYAQTQMQSSFGINMVALDHGQ-PKLLNLKEMLHAFILHRREVVTR 364 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP------------------- 415 R+ F ++ R +L+GL I+ NI+ II +IR+ P Sbjct: 365 RTVFELKKARARAHLLEGLAISLANIEPIIELIRHSSTPAEAKTALQAQGWKLGNVAAML 424 Query: 416 ----VMVSR--------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457 V V+R + +T+ Q AIL++RL L LE +I +E L+ Sbjct: 425 EASGVDVARPDGLAIEFGMRDDLYFMTDTQAQAILDMRLHKLTGLEHEKILNEYKELIEI 484 Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517 + +L + + I E+ +V+ F+ + RRT E++ ++ + +I + Sbjct: 485 ITALLFILENPHRLMEVITEELNDVRANFADA-----RRT---EITASETDLCMEDLITE 536 Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569 E + V +S+ G+++ + + SA K+ D + L A T D IL ST Sbjct: 537 EDVVVTLSHEGYVKYQPLTDYEAQRRGGKGKSATKMKDEDFIDKLLVASTHDTILCFSTR 596 Query: 570 GKAYTLPAGN--LLSGRGHGEAIQLLIDLNHNQDIVTAF---VYDSTCKLLVVSSKG 621 G+ Y L L S + G I ++ L + I YD + + ++ G Sbjct: 597 GRLYWLKVFQLPLASRQARGRPIINILPLEQGERITAILPVRTYDDDKFVFMATANG 653 >gi|255522630|ref|ZP_05389867.1| DNA gyrase subunit A [Listeria monocytogenes FSL J1-175] Length = 514 Score = 401 bits (1031), Expect = e-109, Method: Compositional matrix adjust. Identities = 200/445 (44%), Positives = 300/445 (67%), Gaps = 5/445 (1%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 + + ++L + +L YA+S I RA+PD+RDG KPVHRRI++AM+++G+ A+KK Sbjct: 11 QRITEINLNKEMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYAMNDLGMTSDKAYKK 70 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 SARIVGEVIGK HPHGD +VY ++VR+AQ F R L+ G GNFG++DGD AAA RYTEA Sbjct: 71 SARIVGEVIGKYHPHGDTAVYFTMVRMAQDFSYRNMLVDGHGNFGSVDGDMAAAMRYTEA 130 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 RM++++ +L+ +++D +D+ D Y+ + EPV+ P++FPNLL NG+SGIAVGMAT+IP+H Sbjct: 131 RMSKISMELLRDINKDTIDYADNYDGSEREPVILPARFPNLLVNGSSGIAVGMATNIPTH 190 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 ++ E+ + LAL +P+I+I L+EYI GPDFPT G+I+ R I +Y GRG VR Sbjct: 191 HLGEVIDGVLALSHDPDITIRDLMEYIPGPDFPTAGMIM-GRSGIRRAYESGRGSITVRG 249 Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314 R +EE G IV+TEIPYQV K+RL+E+IAEL K+I + + DES ++ Sbjct: 250 RVDIEEKKNGKETIVITEIPYQVNKARLVERIAELAREKKIDGITSLNDESDRSGMRIVI 309 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 R + +++ ++F ++ ++T F +NM L + P+V+ L IL +L H++ V+ R Sbjct: 310 EVRRDISASVIVNNLFKMTALQTTFGINMLAL-VDNHPKVLNLKEILYHYLEHQKVVIRR 368 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAI 431 R+ F ++ + R IL+GL IA NID II +IR D K ++++F+L++ Q AI Sbjct: 369 RTEFELRKAEARAHILEGLRIALDNIDAIIKLIRGSKTSDVAKEGLMTQFNLSDKQAQAI 428 Query: 432 LNLRLRSLRKLEEYQIKSELDNLLA 456 L++RL+ L LE +I+ E NL+A Sbjct: 429 LDMRLQRLTGLEREKIEEEYQNLVA 453 >gi|329123315|ref|ZP_08251881.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Haemophilus aegyptius ATCC 11116] gi|327471411|gb|EGF16861.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Haemophilus aegyptius ATCC 11116] Length = 880 Score = 401 bits (1031), Expect = e-109, Method: Compositional matrix adjust. Identities = 252/659 (38%), Positives = 378/659 (57%), Gaps = 64/659 (9%) Query: 13 VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72 ++ ++ V++ L+ YL YA+S I RA+PD+RDG KPVHRR++ +M G + Sbjct: 5 IQSSITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDREGNTANKKY 64 Query: 73 KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132 KSAR+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG+IDGD+ AA RYT Sbjct: 65 VKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRYT 124 Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192 E RM ++ + +L +D++ V+F Y+ E P V P++ P LLANG+SGIAVGMAT+IP Sbjct: 125 EVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPALLANGSSGIAVGMATNIP 184 Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252 HN+ E+ LA IDN EI+I++L+++I GPDFPT +I R+ I E+YR GRG V Sbjct: 185 PHNLNEVLNGCLAYIDNNEITIDELMQHIPGPDFPTAALI-NGRKGIEEAYRTGRGKVYV 243 Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRI 311 RAR VE +G I+V+E+PYQV K++L+EKIAELI K+I + +I D S E +RI Sbjct: 244 RARATVETNEKGREQIIVSELPYQVNKAKLVEKIAELIREKKIEGISNITDLSNKEGIRI 303 Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371 + K R ++++ ++ L+ M+ F +NM L G+ P++ L I++ ++ HRREV Sbjct: 304 EIDIK-RDAVGEVVLNHLYSLTQMQVTFGINMVALDHGQ-PRLFNLKEIIESFVLHRREV 361 Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSR-------- 420 + RRS F ++ R IL+GL +A NIDE+IAIIRN ++ + SR Sbjct: 362 VTRRSIFELRKARERTHILEGLAVARSNIDEMIAIIRNSKNREEAATAISSRSWTLHNDI 421 Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457 + L+ QV+AIL LRL L + ++ E + LL + Sbjct: 422 INLLDVSARPDELEENLGIQGEQYYLSPAQVNAILELRLHRLTGIAFEEVIKEYEELLVK 481 Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517 + +L+S ++ I E+ EVK F G R T E++ A + +I + Sbjct: 482 IADLLHILSSAERLMEVIREELEEVKAQF------GDDRLT--EITAASGDIDLEDLIAQ 533 Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569 E + V +S+ G+++ + + SA KE D ++ L A+T D IL S+ Sbjct: 534 EDVVVTLSHEGYVKYQPLTDYEAQRRGGKGKSATKMKEEDFIEKLLVANTHDTILCFSSR 593 Query: 570 GKAYTLPAGNL-LSGRG-HGEAIQLLIDLNHNQDI-----VTAFVYDSTCKLLVVSSKG 621 G+ Y L L + RG G I ++ L N+ I V+A+ D K +V+++ G Sbjct: 594 GRLYWLKVYQLPQASRGARGRPIVNILPLQENERITAILPVSAYEED---KFVVMATAG 649 >gi|160893406|ref|ZP_02074191.1| hypothetical protein CLOL250_00955 [Clostridium sp. L2-50] gi|156864801|gb|EDO58232.1| hypothetical protein CLOL250_00955 [Clostridium sp. L2-50] Length = 849 Score = 401 bits (1031), Expect = e-109, Method: Compositional matrix adjust. Identities = 216/530 (40%), Positives = 334/530 (63%), Gaps = 24/530 (4%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 + + V L+ +E Y+ YA+S I RA+PD+RDG KPV RRI+H+M E+ +K Sbjct: 8 DKISEVGLKKTMERSYIDYAMSVIAARALPDVRDGLKPVQRRILHSMIELNNGPDKPHRK 67 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 ARIVG+ +GK HPHGD S+YD+LV+LAQ + RYPL+ G GNFG+ DGD AAA RYTEA Sbjct: 68 CARIVGDTMGKYHPHGDSSIYDALVKLAQDWNTRYPLVDGHGNFGSEDGDGAAAMRYTEA 127 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 R+++++ +L +++D VDF ++E + EP V PS+FPNLL NGT+GIAVGMAT+IP H Sbjct: 128 RLSKISMEMLADINKDTVDFVPNFDETEKEPTVLPSRFPNLLVNGTTGIAVGMATNIPPH 187 Query: 195 NVQEICEAALALIDN-----PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249 N++E+ A + +IDN E SI+++++ I GPDFP G I+ R I E+YR GRG Sbjct: 188 NLKEVIGATVKIIDNRIEEDRETSIDEIMQIIKGPDFPMGAEILGHR-GIKEAYRTGRGK 246 Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-ED 308 +VRA +E + G IVVTE+PY V K+ LI+KI EL+ KR+ + D+RDES+ E Sbjct: 247 IKVRAVTDIEAMPNGKHKIVVTELPYMVNKALLIQKIVELVKTKRVEGITDVRDESSREG 306 Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368 +R+V+ K + + ++L+ ++ + ++ F +NM L G VP+++ + +L +L H+ Sbjct: 307 IRVVIELK-KDTNANVLLNQLYKHTQLQDTFGVNMLALVDG-VPKILNISQMLGYYLKHQ 364 Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTE 425 +V+ RR+ + + + R ILKGLLIA NIDE+I IIR+ K ++ RF LTE Sbjct: 365 EDVVTRRTKYDLNKAEERAHILKGLLIALDNIDEVINIIRSSKSVQDAKNSLIERFGLTE 424 Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485 Q AI+++RLR+L LE ++++E L+ + + ++L K+ I E+ + + Sbjct: 425 IQAQAIVDMRLRALTGLEREKLEAEYKELMDKISYLKAILADEKKLLGVIKDELLVISQK 484 Query: 486 FS--KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL 533 + + T LGR D+ T + +IE+E I + ++ G+I+ + Sbjct: 485 YGDERRTALGR---------DVDEVT-DEELIERENIVITMTKLGYIKRM 524 >gi|121884|sp|P14829|GYRA_KLEOX RecName: Full=DNA gyrase subunit A gi|43808|emb|CAA34724.1| unnamed protein product [Klebsiella pneumoniae] Length = 876 Score = 401 bits (1031), Expect = e-109, Method: Compositional matrix adjust. Identities = 264/726 (36%), Positives = 400/726 (55%), Gaps = 66/726 (9%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + V++ L+ YL YA+S I RA+PD+RDG KPVHRR+++AM+ +G D+ A+KKSA Sbjct: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG++DGDSAAA RYTE RM Sbjct: 68 RVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRM 127 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 +++A ++ ++++ VDF D Y+ + P V P+K PNLL NG+ GIAVGMAT+IP HN+ Sbjct: 128 SKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSFGIAVGMATNIPPHNL 187 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ LA +++ EISIE L+E+I GPDFPT II R I E+YR GRG + AR Sbjct: 188 TEVINGRLAYVEDEEISIEGLMEHIPGPDFPTAAII-NGRRGIEEAYRTGRGKVYICARA 246 Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314 VE + G I+V EIPYQV K+RLIEKIAEL+ KR+ + +RDES +D +RIV+ Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K ++ +++ +++ + ++ F +NM L G+ P++M L I+ ++ HRREV+ R Sbjct: 307 VKRDAVG-RVVLNNLYSQTQLQVSFGINMVALHHGQ-PKIMNLKEIIAAFVRHRREVVTR 364 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----------- 420 R+ ++ R +IL+ L IA NID II +IR P K +++R Sbjct: 365 RTILALRKARDRADILEALSIALANIDPIIELIRRAPTPAEAKAGLIARSWDLGNVSAML 424 Query: 421 ----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458 + LTE Q AIL+LRL+ L LE ++ E LL + Sbjct: 425 EAGDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQI 484 Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ-QAMIEK 517 ++ +L S + I E+ V+E F + RRT A+ + + +I + Sbjct: 485 AELLHILGSADRLMEVIREELELVREQFGDA-----RRTDIT----ANSVDINIEDLITQ 535 Query: 518 EPITVVISNRGWIRSLKSHSVDL--------SALHFKEGDSLKIALHAHTTDRILLLSTD 569 E + V +S+ G+++ + + SA KE D + L A+T D IL S+ Sbjct: 536 EDVVVTLSHEGYVKYQPVNDYEAQRRGGKGKSAPRIKEEDFIDRLLVANTHDTILCFSSR 595 Query: 570 GKAYTLPAGNLL-SGRG-HGEAIQLLIDLNHNQ---DIVTAFVYDSTCKLLVVSSKGNAF 624 G+ Y + + + RG G I L+ L N+ I+ Y+ + + ++ G Sbjct: 596 GRLYWMKVYQVPEASRGARGRPIVNLLPLEANERYTAILPVREYEEGVNVFMATASGTVK 655 Query: 625 IVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR 683 E G + ++ +++ V +G D V + K++ F D + M R Sbjct: 656 KTPADEFSRPRSAGIIAVNLNEGDELIGVDLTSGQDEVMLFSAAGKVVRFKEDDVRAMGR 715 Query: 684 -GKGVR 688 GVR Sbjct: 716 TATGVR 721 >gi|290580453|ref|YP_003484845.1| DNA gyrase A subunit [Streptococcus mutans NN2025] gi|254997352|dbj|BAH87953.1| DNA gyrase A subunit [Streptococcus mutans NN2025] Length = 825 Score = 401 bits (1030), Expect = e-109, Method: Compositional matrix adjust. Identities = 236/640 (36%), Positives = 378/640 (59%), Gaps = 43/640 (6%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 + N+ V+L ++ ++ YA+S I RA+PD+RDG KPVHRRI++ M+E+G+ K Sbjct: 8 DRNLVDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHK 67 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSARI G+V+GK HPHGD S+Y+++VR+AQ + R+ L+ G GNFG++DGD AAA RYTE Sbjct: 68 KSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTE 127 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 ARM+++A +L+ ++++ VDF D Y+ + EP+V PS+FPNLL NG +GIAVGMAT+IP Sbjct: 128 ARMSKIAMEMLRDINKNTVDFADNYDGSEREPLVLPSRFPNLLVNGATGIAVGMATNIPP 187 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E +A +DNP+++ L+E + GPDFPTG +++ + I +Y G+G +R Sbjct: 188 HNLGETIDAVKLAMDNPDVTTRDLMEVLPGPDFPTGALVM-GKSGIHRAYDTGKGSIVLR 246 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312 AR +E+ G IVVTE PY V K+++ E I L KRI + +RDES+ E VR + Sbjct: 247 ARTEIEQTKSGRERIVVTEFPYMVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGVRFI 306 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 + + R ++++ ++F L+ ++T F NM + G VP+++ L IL ++ H++EV+ Sbjct: 307 IEVR-RDASANVILNNLFKLTSLQTNFSFNMLAIEKG-VPKILSLRQILDNYIDHQKEVI 364 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVD 429 RR+ F + R IL+GLLIA ++DE+I IIRN + + ++SRF L+E Q Sbjct: 365 VRRTKFDKAKAESRAHILEGLLIALDHLDEVITIIRNSETDTIAQAELMSRFDLSERQSQ 424 Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489 AIL++RLR L LE +I+SE ++LLA + +L ++ I E+ ++K F+ Sbjct: 425 AILDMRLRRLTGLERDKIQSEYNDLLALIADLADILAKPERVITIIKDELEDIKRKFAD- 483 Query: 490 TDLGRRRTTFC--EVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSVD 539 +RRT EV + + +IE+E + + +SN+G+I+ L K Sbjct: 484 ----QRRTELMVGEVL----SLEDEDLIEEEDVLITLSNKGYIKRLGQDEFRTQKRGGRG 535 Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLLSGR 584 + + D ++ + T D +L + G+ Y LP NLL Sbjct: 536 VQGTGVNDDDFVRELVSTSTHDAMLFFTNQGRVYRLKGYEIPEYGRTAKGLPIVNLLK-L 594 Query: 585 GHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAF 624 GE IQ +I++ + D +++ +T + +V + +AF Sbjct: 595 DDGETIQTIINVKSD-DFHDKYLFFTTRQGVVKRTSVSAF 633 >gi|293363502|ref|ZP_06610258.1| DNA gyrase, A subunit [Mycoplasma alligatoris A21JP2] gi|292552851|gb|EFF41605.1| DNA gyrase, A subunit [Mycoplasma alligatoris A21JP2] Length = 894 Score = 401 bits (1030), Expect = e-109, Method: Compositional matrix adjust. Identities = 243/693 (35%), Positives = 390/693 (56%), Gaps = 35/693 (5%) Query: 26 LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85 ++ +L YA+S I RA+PD RDG KPVHRRI++ M E+G+ + +KSARIVG+V+GK Sbjct: 80 MKNSFLEYAMSVIVSRALPDARDGLKPVHRRILYDMLELGITHSSQHRKSARIVGDVLGK 139 Query: 86 LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145 HPHGD SVY+++VRLAQ F RYPL+ G GNFG+IDGD AAA RYTEARM+++A +L Sbjct: 140 YHPHGDSSVYEAMVRLAQDFSMRYPLVDGHGNFGSIDGDQAAAMRYTEARMSKLAAEMLD 199 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 G+ +D V+F D Y+ + EPVV PS+FPN+L +G +GIAVGMAT IP HN+ E A +A Sbjct: 200 GIKKDTVNFVDNYDASELEPVVLPSRFPNILVSGATGIAVGMATEIPPHNLTETINATIA 259 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265 NPEI+ ++L+E+I GPDFPTG I+ + I ++Y G+G +R++ +EE G Sbjct: 260 FARNPEITTKELMEHIKGPDFPTGATILGVK-GIYDAYETGKGKIPLRSQAKIEEFANGK 318 Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLFPKNRSLDPDL 324 I++TEIPY V+K+ +IEKI EL K + + ++RDES E +RIV+ K + + + Sbjct: 319 SRIIITEIPYAVKKTTIIEKIVELHKDKTVEGIGELRDESNREGIRIVIDVK-KGYNAHI 377 Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384 L+ ++ S ++T N+ L G P+++ L IL +L H+ EV+ RR F ++ Sbjct: 378 LLNKLYQKSYLQTNVNANLVALVHGE-PKLLNLKQILSIYLDHQIEVVTRRLKFDLEKAQ 436 Query: 385 RRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAILNLRLRSLRK 441 ++ IL GL IA NIDE++ II+ N+ + + RF+L++ Q AIL++ LR L Sbjct: 437 DKLHILDGLKIAVSNIDEVVQIIKTSANDAIAQERLAKRFNLSDRQTKAILDMNLRRLTG 496 Query: 442 LEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCE 501 L ++ E+D L E + +L S + N I E+ E+++ F RRT E Sbjct: 497 LNIEKMNLEIDELNKEISYLKGILESREALINLIIDELSEIRDRFGD-----ERRTQIDE 551 Query: 502 VSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL--------SALHFKEGDSLKI 553 + + + + +I I + S +G+++ +K ++ S + + D + Sbjct: 552 FTVS--SISDEDLIPVNNIVITTSVKGYVKRMKLEDYNMQNRGGIGVSTMKTYDDDDISK 609 Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEA---IQLLIDLNHNQ-----DIVTA 605 L T ++L + G+ Y + A + G + I ++ LN + +++ Sbjct: 610 ILQTTTHTDLMLFTNLGRVYRIRAHQVPEGSKQSKGTPFINIIPSLNEKEGEKVVSLLSV 669 Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVG 665 Y+ L+ ++ KG SE + GK ++ ++ + VT ++ ++ Sbjct: 670 DEYNDDHFLVTITEKGVIKKTALSEYESIRSNGKNAFRLKEDDHLVNAFIVTDENEILIA 729 Query: 666 ENRKLLI-FSIDQIPEMSRG----KGVRLQSYK 693 N K ++ FS + +SR +G+RL K Sbjct: 730 SNGKNVVKFSSLDLRPLSRNSQGVRGIRLDENK 762 >gi|261491600|ref|ZP_05988183.1| DNA gyrase subunit A [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261312726|gb|EEY13846.1| DNA gyrase subunit A [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 898 Score = 401 bits (1030), Expect = e-109, Method: Compositional matrix adjust. Identities = 238/606 (39%), Positives = 348/606 (57%), Gaps = 55/606 (9%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 +++ VS+ L+ YL YA+S I RA+PD+RDG KPVHRR++ +M + + K Sbjct: 6 KDIIPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTYNKPHVK 65 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 SAR+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG+IDGD+ AA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRYTEV 125 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 RM ++ + +L +D++ VDF Y+ ++ P V P+K P LL NG+SGIAVGMAT+IP H Sbjct: 126 RMQKITQELLTDLDKETVDFSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATNIPPH 185 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 N+ E+ + LA I+N +IS+E+L+ YI GPDFPTG II R+ I E+YR GRG VRA Sbjct: 186 NLGEVLDGCLAYIENEQISVEELMRYIPGPDFPTGAII-NGRKGIEEAYRTGRGKVYVRA 244 Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314 + VE +G IVVTE+PYQV K++LIEKIAEL+ K+I + I D S + ++ Sbjct: 245 KASVETTDKGREQIVVTELPYQVNKAKLIEKIAELVKEKKIEGISKIDDYSDKKGISIVI 304 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 R ++++ ++ L+ M+ F +NM L G+ P+V+ L I++ ++ HRREV+ R Sbjct: 305 EVKRDAVGEVVLNHLYSLTQMQVTFGINMVALDNGQ-PKVLNLRQIIEAFVKHRREVVTR 363 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN------------------------- 409 R+ F ++ R IL+GL IA NID +I +IR Sbjct: 364 RTIFELRKARERAHILEGLAIALANIDPVIELIRASKTAEEAREGLLARPWALGNVAPML 423 Query: 410 ----------EDKPKPVMV--SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457 ED P+ + V + L+E Q AIL LRL L LE +I E LL E Sbjct: 424 EAAGVGASRPEDLPEHLGVRDGEYYLSEAQARAILELRLHRLTGLEHEKIVEEYKELLTE 483 Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517 ++ +L S ++ I E+ VK F+ RRT E++ A + +I + Sbjct: 484 IGELIHILTSPERLMEVIREELERVKTDFNDE-----RRT---EITAASGDINIEDLIAQ 535 Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569 E + V +S+ G+++ + + SA K+ D ++ L A+T D IL S+ Sbjct: 536 EDVVVTLSHAGYVKYQPLSDYEAQRRGGKGKSATKMKKDDFIEKLLVANTRDTILCFSSR 595 Query: 570 GKAYTL 575 G+ Y L Sbjct: 596 GRLYQL 601 >gi|297570052|ref|YP_003691396.1| DNA gyrase, A subunit [Desulfurivibrio alkaliphilus AHT2] gi|296925967|gb|ADH86777.1| DNA gyrase, A subunit [Desulfurivibrio alkaliphilus AHT2] Length = 837 Score = 401 bits (1030), Expect = e-109, Method: Compositional matrix adjust. Identities = 247/699 (35%), Positives = 389/699 (55%), Gaps = 46/699 (6%) Query: 19 AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78 +S+ L + YL YA+S I RA+PD+RDG KPVHRR++ AM E+ + F KSARI Sbjct: 12 TISIEKELRKSYLDYAMSVIIGRALPDVRDGLKPVHRRVLFAMRELNNYYNRPFLKSARI 71 Query: 79 VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138 VG+VIGK HPHGD +VYD+LVR+AQ F RYPL+ GQGNFG++DGD AA RYTEARMT+ Sbjct: 72 VGDVIGKYHPHGDSAVYDTLVRMAQSFSMRYPLVDGQGNFGSVDGDPPAAMRYTEARMTR 131 Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198 + + ++ +D++ VDF Y+ +EP+V P++ PNLL NG +GIAVGMAT+IP HN++E Sbjct: 132 IDQDLISDLDKETVDFVPNYDNSMTEPLVLPARIPNLLINGAAGIAVGMATNIPPHNLRE 191 Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258 + + +A+I++P I++ L+E+I GPDFPTG I R I E+Y GRG +R+R V Sbjct: 192 VIDGLIAMIEDPNITVSALMEHISGPDFPTGAYIC-GRAGIREAYETGRGSLMLRSRCEV 250 Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFPKN 317 E+ G I++TEIPYQ K+ LIE+IA L+ K+I + ++RDES + +RIVL K Sbjct: 251 EKQKNGRESIIITEIPYQQNKTTLIERIALLVKEKKIESISEVRDESDRQGMRIVLDLK- 309 Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377 + + ++++ ++ ++ ++ + + + + R P+++ L IL+ ++ HR+ V++RR++ Sbjct: 310 KDENAEVVINQLYKMTPLQRGYGIILLSIVNNR-PEILNLRQILEHFILHRKTVVYRRTA 368 Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVDAILNL 434 ++ + + IL+GL IA N+DE++ +I++ P +++RF+L+ Q AIL + Sbjct: 369 HDLRKAEEKAHILEGLKIAITNLDEVVELIKSSANPNEAREGLINRFALSAIQAQAILEM 428 Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494 RL L LE +I E L+ E E + +L I E ++E + Sbjct: 429 RLHRLTGLEREKIIEEYQALMKEIEWLRRVLADESLVLQIIRQEFEAIREQYGDE----- 483 Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL----------SALH 544 RRT E A L + MI +E + V +++ G+I K + VDL Sbjct: 484 RRTEIIE---APDEILPEDMIAREDMVVTVTHAGYI---KRNPVDLYRAQRRGGKGIRGA 537 Query: 545 FKEGDSLKIALH-AHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDLNH 598 D +H A T D +L + G K Y +P L+ G+A+ L+DL Sbjct: 538 GGIDDDFISWMHVASTHDTLLFFTNRGRVFWRKVYEIPQAGRLA---RGKAVVNLLDLAP 594 Query: 599 NQDIVTAFVYDS-------TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK 651 + + S C +L+ + KG E R+GK L ++++ Sbjct: 595 EEKLAAILPVQSFEVPEGRECYILMATRKGVVKKTTIQEFSRPVRRGKIALTFREDDEIL 654 Query: 652 LVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSRG-KGVR 688 GD+ ++ + + + F I M RG GVR Sbjct: 655 AAALTYGDNEILLLSRKGMAVRFHEGDIRPMGRGATGVR 693 >gi|88608652|ref|YP_506822.1| DNA gyrase, A subunit [Neorickettsia sennetsu str. Miyayama] gi|88600821|gb|ABD46289.1| DNA gyrase, A subunit [Neorickettsia sennetsu str. Miyayama] Length = 869 Score = 401 bits (1030), Expect = e-109, Method: Compositional matrix adjust. Identities = 231/623 (37%), Positives = 366/623 (58%), Gaps = 49/623 (7%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 V+L L+ YL+YA+S I RAIPD+RDG KPVHRRI+++M+E+ + ++KSAR++ Sbjct: 7 VNLEQELKSSYLSYAMSVIINRAIPDVRDGLKPVHRRILYSMNELSFYWNKPYRKSARVI 66 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 GEVIGK HPHGD ++YD+LVR+AQ F PLI GQGNFG+IDGD AAA RYTE R+ + Sbjct: 67 GEVIGKYHPHGDSAIYDALVRMAQNFSLLVPLIDGQGNFGSIDGDPAAAMRYTEVRLEYI 126 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 ++ +L + E++VDFR Y+ ++EPVV P+KFPN+L NGT+G+AVGMAT++P+HN+ E+ Sbjct: 127 SKFLLDDLYENSVDFRSNYDNSETEPVVLPAKFPNILVNGTAGVAVGMATNVPTHNLSEV 186 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 EA ++N ++ ++LL+ I GPDFPTGG+I+ E I S+ GRG +R++ E Sbjct: 187 IEACKLYLENNNVTTDELLKVIKGPDFPTGGLII-GEEGIKASFESGRGSIIIRSKTHFE 245 Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFPKNR 318 E G I+V E+PYQV K++LIE IA L+ KR+ + D+RDES E +R+V+ K R Sbjct: 246 ETEAGK-AIIVDELPYQVNKAKLIENIALLVKEKRLDSISDLRDESNKEGIRVVIELK-R 303 Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378 ++++ +F ++ ++T + NM +L R P +M L IL ++AHR+EV+ RR+ F Sbjct: 304 GASFEVVLNQLFQMTQLQTSYSTNMVLLDNMR-PTLMSLRDILAAFIAHRKEVISRRTEF 362 Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIR----NEDKPKPV------------------ 416 R+ + +L L +A LNIDE++ I++ NE K + Sbjct: 363 RLAKAREKANVLVALYVAILNIDEVVHILKSSGDNEAAIKALSAKHWAIDEELELLVETI 422 Query: 417 ----MVSR-FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQ 471 +++R + L+ Q AIL ++++ + E+ Q+ +E+ + ++ S+L S Sbjct: 423 SNIKLLNREYKLSTAQSKAILEMKMQRITNTEKGQLVAEIHAEMDIVKECASILGSEAVL 482 Query: 472 WNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR 531 N I E+ E+K + ++ R++ + A A ++ +IE+E + V + G+I+ Sbjct: 483 TNVIVRELNEIKAKYPQA-----RKSIILKNVNAVYA--EEDLIEREQVVVTATYSGYIK 535 Query: 532 SLKSHSVDLS--------ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG 583 + + + A + K D L T D IL S+ GK Y L A L G Sbjct: 536 RVHISNYRVQRRGGKGRIAQNIKSEDQLAQIFVLSTHDEILFFSSRGKVYKLKAYKLPIG 595 Query: 584 --RGHGEAIQLLIDLNHNQDIVT 604 + G A+ + DL ++ I + Sbjct: 596 EPQSRGRALVNIFDLADDESITS 618 >gi|68250206|ref|YP_249318.1| DNA gyrase subunit A [Haemophilus influenzae 86-028NP] gi|229845342|ref|ZP_04465474.1| DNA gyrase subunit A [Haemophilus influenzae 6P18H1] gi|68058405|gb|AAX88658.1| DNA gyrase subunit A [Haemophilus influenzae 86-028NP] gi|229811795|gb|EEP47492.1| DNA gyrase subunit A [Haemophilus influenzae 6P18H1] Length = 880 Score = 401 bits (1030), Expect = e-109, Method: Compositional matrix adjust. Identities = 252/659 (38%), Positives = 378/659 (57%), Gaps = 64/659 (9%) Query: 13 VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72 ++ ++ V++ L+ YL YA+S I RA+PD+RDG KPVHRR++ +M G + Sbjct: 5 IQSSITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDREGNTANKKY 64 Query: 73 KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132 KSAR+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG+IDGD+ AA RYT Sbjct: 65 VKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRYT 124 Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192 E RM ++ + +L +D++ V+F Y+ E P V P++ P LLANG+SGIAVGMAT+IP Sbjct: 125 EVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPALLANGSSGIAVGMATNIP 184 Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252 HN+ E+ LA IDN EI+I++L+++I GPDFPT +I R+ I E+YR GRG V Sbjct: 185 PHNLNEVLNGCLAYIDNNEITIDELMQHIPGPDFPTAALI-NGRKGIEEAYRTGRGKVYV 243 Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRI 311 RAR VE +G I+V+E+PYQV K++L+EKIAELI K+I + +I D S E +RI Sbjct: 244 RARATVETNEKGREQIIVSELPYQVNKAKLVEKIAELIREKKIEGISNITDLSNKEGIRI 303 Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371 + K R ++++ ++ L+ M+ F +NM L G+ P++ L I++ ++ HRREV Sbjct: 304 EIDIK-RDAVGEVVLNHLYSLTQMQVTFGINMVALDHGQ-PRLFNLKEIIESFVLHRREV 361 Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSR-------- 420 + RRS F ++ R IL+GL +A NIDE+IAIIRN ++ + SR Sbjct: 362 VTRRSIFELRKARERTHILEGLAVARSNIDEMIAIIRNSKNREEAATAISSRSWTLHSDI 421 Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457 + L+ QV+AIL LRL L + ++ E + LL + Sbjct: 422 INLLDVSARPDELEENLGIQGEQYYLSPAQVNAILELRLHRLTGIAFEEVIKEYEELLVK 481 Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517 + +L+S ++ I E+ EVK F G R T E++ A + +I + Sbjct: 482 IADLLHILSSAERLMEVIREELEEVKAQF------GDDRLT--EITAASGDIDLEDLIAQ 533 Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569 E + V +S+ G+++ + + SA KE D ++ L A+T D IL S+ Sbjct: 534 EDVVVTLSHEGYVKYQPLTDYEAQRRGGKGKSATKMKEEDFIEKLLVANTHDTILCFSSR 593 Query: 570 GKAYTLPAGNL-LSGRG-HGEAIQLLIDLNHNQDI-----VTAFVYDSTCKLLVVSSKG 621 G+ Y L L + RG G I ++ L N+ I V+A+ D K +V+++ G Sbjct: 594 GRLYWLKVYQLPQASRGARGRPIVNILPLQENERITAILPVSAYEED---KFVVMATAG 649 >gi|260582929|ref|ZP_05850713.1| DNA gyrase, A subunit [Haemophilus influenzae NT127] gi|260094029|gb|EEW77933.1| DNA gyrase, A subunit [Haemophilus influenzae NT127] Length = 880 Score = 400 bits (1029), Expect = e-109, Method: Compositional matrix adjust. Identities = 250/659 (37%), Positives = 376/659 (57%), Gaps = 64/659 (9%) Query: 13 VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72 ++ ++ V++ L+ YL YA+S I RA+PD+RDG KPVHRR++ +M G + Sbjct: 5 IQSSITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDREGNTANKKY 64 Query: 73 KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132 KSAR+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG+IDGD+ AA RYT Sbjct: 65 VKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRYT 124 Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192 E RM ++ + +L +D++ V+F Y+ E P V P++ P LLANG+SGIAVGMAT+IP Sbjct: 125 EVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPALLANGSSGIAVGMATNIP 184 Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252 HN+ E+ LA IDN EI+I++L+++I GPDFPT +I R+ I E+YR GRG V Sbjct: 185 PHNLNEVLNGCLAYIDNNEITIDELMQHIPGPDFPTAALI-NGRKGIEEAYRTGRGKVYV 243 Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRI 311 RAR VE +G I+V+E+PYQV K++L+EKIAELI K+I + +I D S E +RI Sbjct: 244 RARATVETNEKGREQIIVSELPYQVNKAKLVEKIAELIREKKIEGISNITDLSNKEGIRI 303 Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371 + K R ++++ ++ L+ M+ F +NM L G+ P++ L I++ ++ HRREV Sbjct: 304 EIDIK-RDAVGEVVLNHLYSLTQMQVTFGINMVALDHGQ-PRLFNLKEIIESFVLHRREV 361 Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS------------ 419 + RRS F ++ R IL+GL +A NIDE+IAIIRN + S Sbjct: 362 VTRRSIFELRKARERTHILEGLAVARSNIDEMIAIIRNSKNREEAATSISSRSWTLHSDI 421 Query: 420 ----------------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457 ++ L+ QV+AIL LRL L + ++ E + LL + Sbjct: 422 INLLDLSARPDELEENLGIQGEQYYLSPAQVNAILELRLHRLTGIAFEEVIKEYEELLVK 481 Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517 + +L+S ++ I E+ +VK F G R T E++ A + +I + Sbjct: 482 IADLLHILSSAERLMEVIREELEDVKAQF------GDDRLT--EITAASGDIDLEDLIAQ 533 Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569 E + V +S+ G+++ + + SA KE D ++ L A+T D IL S+ Sbjct: 534 EDVVVTLSHEGYVKYQPLTDYEAQRRGGKGKSATKMKEEDFIEKLLVANTHDTILCFSSR 593 Query: 570 GKAYTLPAGNL-LSGRG-HGEAIQLLIDLNHNQDI-----VTAFVYDSTCKLLVVSSKG 621 G+ Y L L + RG G I ++ L N+ I V+A+ D K +V+++ G Sbjct: 594 GRLYWLKVYQLPQASRGARGRPIVNILPLQENERITAILPVSAYEED---KFVVMATAG 649 >gi|163790924|ref|ZP_02185347.1| DNA gyrase, A subunit [Carnobacterium sp. AT7] gi|159873766|gb|EDP67847.1| DNA gyrase, A subunit [Carnobacterium sp. AT7] Length = 861 Score = 400 bits (1029), Expect = e-109, Method: Compositional matrix adjust. Identities = 230/609 (37%), Positives = 353/609 (57%), Gaps = 36/609 (5%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 +EN+K V L + +L YA+S I RA+PD+RDG KPVHRRI++ MSE+G+ A K Sbjct: 6 KENIKNVELSHEMRSSFLDYAMSVIVARALPDVRDGLKPVHRRILYGMSELGVTPDKAHK 65 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSARIVG+V+GK HPHGD ++Y+S+VR+AQ + RYPL+ G GNFG++DGD AAA RYTE Sbjct: 66 KSARIVGDVMGKYHPHGDSAIYESMVRMAQDWSYRYPLVDGHGNFGSVDGDGAAAMRYTE 125 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 ARMT++A +L+ +++D +D+ D Y+ + EP V P++FPNLL NG +GIAVGMAT+IP Sbjct: 126 ARMTKMALEMLRDINKDTIDYHDNYDGSEREPDVLPARFPNLLVNGVTGIAVGMATNIPP 185 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E+ A L++NP+ + L+E I GPDFPTGG+++ + I ++Y G+G VR Sbjct: 186 HNLTEVISALHILMNNPDATTADLMEAIPGPDFPTGGLVM-GKSGIRKAYETGKGSIMVR 244 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313 A+ +E G I+V E+PY V K+RL+E+IA+L KRI + D+ DES D ++ Sbjct: 245 AKVEIEIQKNGKERILVHELPYMVNKARLVERIADLARDKRIEGITDLADESDRDGMRIV 304 Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373 R + +++ +++ L+ M+T F NM + G VP+V+ L IL+E+L H+ V+ Sbjct: 305 IDVRRDVSASVVLNNLYKLTSMQTSFGFNMLAIVNG-VPKVLSLKSILEEYLKHQEVVIR 363 Query: 374 RRSSFRMQAIDRRVEILKGLLIAY---LNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDA 430 RR+++ + + R IL+GL IA I II + D K ++ + L+E Q A Sbjct: 364 RRTAYDKRKAEARAHILEGLRIALDHIEEIIRIIRSSKTGDVAKTTLIETYGLSEKQAQA 423 Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490 IL++R+ L LE +I+SE L+A E + +L ++ I E+ EV+E F + Sbjct: 424 ILDMRMVRLTGLERDKIESEYTELIALIEDMADILAKPERIHKIIETELLEVQEKFGDA- 482 Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD--------LSA 542 RRT E IT ++++G+I+ L S + Sbjct: 483 ----RRTELLVGEVLSLEDEDLIEEEDIVIT--LTSKGYIKRLPSSEFKSQRRGGRGIQG 536 Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAY---------------TLPAGNLLSGRGHG 587 + + D ++ + T D +L + +GK Y +P NLL G G Sbjct: 537 MGVHDDDFIETLVSCSTHDTLLFFTNNGKVYRSKGYEIPEYGRTAKGIPVINLL-GIDSG 595 Query: 588 EAIQLLIDL 596 E +Q +I++ Sbjct: 596 ETVQAVINV 604 >gi|257465346|ref|ZP_05629717.1| DNA gyrase subunit A [Actinobacillus minor 202] gi|257451006|gb|EEV25049.1| DNA gyrase subunit A [Actinobacillus minor 202] Length = 885 Score = 400 bits (1029), Expect = e-109, Method: Compositional matrix adjust. Identities = 238/606 (39%), Positives = 347/606 (57%), Gaps = 55/606 (9%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 +++ VS+ L+ YL YA+S I RA+PD+RDG KPVHRR++ +M + F K Sbjct: 6 KDITPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTFNRPHVK 65 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 SAR+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG+IDGD+ AA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRYTEV 125 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 RM ++ + +L +D++ VD+ Y+ ++ P V P+K P LL NG+SGIAVGMAT+IP H Sbjct: 126 RMQKITQELLTDLDKETVDYSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATNIPPH 185 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 N+ E+ + LA I++ +ISIE+L+ +I GPDFPTG II R+ I E+YR GRG VRA Sbjct: 186 NLNEVLDGCLAYIEDEQISIEELMRHIPGPDFPTGAII-NGRKGIEEAYRTGRGKVYVRA 244 Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314 + VE +G IVVTE+PYQV K++LIEKIAEL+ K+I + I D S + ++ Sbjct: 245 KASVETTDKGREQIVVTELPYQVNKAKLIEKIAELVKDKKIEGISKIDDYSDKKGISIVI 304 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 R ++++ ++ L+ M+ F +NM L G+ P+V+ L I++ ++ HRREV+ R Sbjct: 305 EVKRDAVAEVVLNHLYSLTQMQVTFGINMVALDNGQ-PKVLNLKQIIEAFVKHRREVVTR 363 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN------------------------- 409 R+ F ++ R IL+GL IA NID +I +IR Sbjct: 364 RTIFELRKARERAHILEGLAIALANIDPVIELIRASKTADEAREGLLARAWELGNVAPML 423 Query: 410 ----------EDKPKPVMV--SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457 ED P + V ++ L+E Q AIL LRL L LE +I E LL E Sbjct: 424 EAAGVDASRPEDLPAELGVRDGKYFLSEAQARAILELRLHRLTGLEHEKIVDEYKALLVE 483 Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517 ++ +L S ++ I E+ VK F RRT E++ A + +I + Sbjct: 484 IGELLHILTSPERLMEVIREELERVKAEFGDE-----RRT---EITAASGDINIEDLIAQ 535 Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569 E + V +S+ G+++ + + SA KE D ++ L A+T D IL S+ Sbjct: 536 EDVVVTLSHAGYVKYQPLSDYEAQRRGGKGKSATKMKEDDFIEKLLVANTHDTILCFSSR 595 Query: 570 GKAYTL 575 G+ Y L Sbjct: 596 GRLYQL 601 >gi|77163709|ref|YP_342234.1| DNA gyrase, subunit A [Nitrosococcus oceani ATCC 19707] gi|254435120|ref|ZP_05048627.1| DNA gyrase, A subunit [Nitrosococcus oceani AFC27] gi|76882023|gb|ABA56704.1| DNA gyrase subunit A [Nitrosococcus oceani ATCC 19707] gi|207088231|gb|EDZ65503.1| DNA gyrase, A subunit [Nitrosococcus oceani AFC27] Length = 846 Score = 400 bits (1029), Expect = e-109, Method: Compositional matrix adjust. Identities = 275/803 (34%), Positives = 428/803 (53%), Gaps = 83/803 (10%) Query: 13 VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72 + + V V++ ++ YL YA+S I RA+PD RDG KPVHRR+++AM E+G D+ + Sbjct: 4 IAQEVFPVNIEDEMKHSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMRELGNDWNKPY 63 Query: 73 KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132 KKSAR+VG+VIGK HPHGD +VYD++VR+AQ F R PLI GQGNFG+IDGDS AA RYT Sbjct: 64 KKSARVVGDVIGKYHPHGDAAVYDAIVRMAQLFSMRCPLIDGQGNFGSIDGDSPAAMRYT 123 Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192 E RM ++A +L ++++ VDF Y+E + EP V P++ PNLLANG+SGIAVGMAT+IP Sbjct: 124 EVRMAKIAHELLADLNKETVDFVPNYDESEHEPAVLPTRIPNLLANGSSGIAVGMATNIP 183 Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252 HN+ E+ A +ALID+P +SI L+ +I GPDFPT GI+ +R I E+Y GRG + Sbjct: 184 PHNLGELLSACIALIDDPALSIAGLMSHIPGPDFPTAGIVNGAR-GIQEAYLTGRGRIFM 242 Query: 253 RARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311 RAR VE + G G I+VTE+PY V K+RL+EKI L+ K+I + +RDES +D Sbjct: 243 RARTHVETDEGSGKQSIIVTELPYMVNKARLLEKIGNLVKEKKIVGIVGLRDESDKDGMR 302 Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371 ++ RS P++++ +++ + +++ F +NM L G+ PQ++ L L+ +L HR+EV Sbjct: 303 MVVELRRSEMPEVVLNQLYLHTQLQSVFGINMVALVDGQ-PQLLNLKLALEAFLRHRQEV 361 Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRF------- 421 + RR+ F ++ R +L+GL IA NID IIA+I+ P +++RF Sbjct: 362 VTRRTMFELRKARERAHVLEGLAIALANIDSIIALIKASSSPAEARDGLIARFWPPGVVI 421 Query: 422 ---------------------------SLTENQVDAILNLRLRSLRKLEEYQIKSELDNL 454 L+ Q AIL +RL L LE+ +I E + + Sbjct: 422 DMLQRAGAESSQPEKLETAYGLQQDGYRLSPAQAQAILEMRLHRLTGLEQSKIIDEYEQV 481 Query: 455 LAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAM 514 + + +L + ++ I E E++E +S RRT E+ + + Sbjct: 482 IIFILGLLEILANPERLMAVIREEFMEMREQYSTP-----RRT---EIQDNHVDLRLEDL 533 Query: 515 IEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLL 566 I++E + V +S+ G+ RS K SA KE D + A+T D +L Sbjct: 534 IQEENVVVTLSHSGYAKSQTLDTYRSQKRGGKGKSATAMKEEDFIDKLFIANTHDTLLCF 593 Query: 567 STDG-----KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVS 618 S+ G K Y LP G+ ++ G+ L+ L + I T ++ + +V+ Sbjct: 594 SSRGKVYWKKVYELPQGSRVA---RGKPFVNLLPLEEGERINTVLSIREFEKDKYIFMVT 650 Query: 619 SKGNAFIVEESEIIANTR-KGKTFLKVSSEEKMKLVVKVTGD---HVAVVGENRKLLIFS 674 + G +V+++ + +R + + + E +LV D + + K++ FS Sbjct: 651 ASG---VVKKTSLADFSRPRSSGIIALDLREGDQLVGADLTDGVQEIMLFSSGGKVIRFS 707 Query: 675 ---IDQIPEMSRG-KGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWL 730 + + +RG KG+ L S VI I T + + Y + L Sbjct: 708 ERDVRPVGRTARGVKGMELPSEH-----RVIALIIAASGTILTATELGYGKRTAIAEYRL 762 Query: 731 GKRGGVGSLVPKGFPRSGKFLSS 753 RGG G + + PR+G+ + + Sbjct: 763 QGRGGRGIISIRTTPRNGEVVGA 785 >gi|301170002|emb|CBW29606.1| DNA gyrase (type II topoisomerase), subunit A [Haemophilus influenzae 10810] Length = 880 Score = 400 bits (1029), Expect = e-109, Method: Compositional matrix adjust. Identities = 251/659 (38%), Positives = 378/659 (57%), Gaps = 64/659 (9%) Query: 13 VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72 ++ ++ V++ L+ YL YA+S I RA+PD+RDG KPVHRR++ +M G + Sbjct: 5 IQSSITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDREGNTANKKY 64 Query: 73 KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132 KSAR+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG+IDGD+ AA RYT Sbjct: 65 VKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRYT 124 Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192 E RM ++ + +L +D++ V+F Y+ E P V P++ P LLANG+SGIAVGMAT+IP Sbjct: 125 EVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPALLANGSSGIAVGMATNIP 184 Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252 HN+ E+ LA IDN EI+I++L+++I GPDFPT +I R+ I E+YR GRG V Sbjct: 185 PHNLNEVLNGCLAYIDNNEITIDELMQHIPGPDFPTAALI-NGRKGIEEAYRTGRGKVYV 243 Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRI 311 RAR VE +G I+V+E+PYQV K++L+EKIAELI K+I + +I D S E +RI Sbjct: 244 RARATVETNEKGREQIIVSELPYQVNKAKLVEKIAELIREKKIEGISNITDLSNKEGIRI 303 Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371 + K R ++++ ++ L+ M+ F +NM L G+ P++ L I++ ++ HRREV Sbjct: 304 EIDIK-RDAVGEVVLNHLYSLTQMQVTFGINMVALDHGQ-PRLFNLKEIIEAFVLHRREV 361 Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---------------------- 409 + RRS F ++ R IL+GL +A NIDE+IAIIRN Sbjct: 362 VTRRSIFELRKARERTHILEGLAVARSNIDEMIAIIRNSKNREEAATAISSRSWTLHSDI 421 Query: 410 ----EDKPKP--------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457 + +P + ++ L+ QV+AIL LRL L + ++ E + LL + Sbjct: 422 INLLDASARPDELEENLGIQGEQYYLSPAQVNAILELRLHRLTGIAFEEVIKEYEELLVK 481 Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517 + +L+S ++ I E+ EVK F G R T E++ A + +I + Sbjct: 482 IADLLHILSSAERLMEVIREELEEVKAQF------GDDRLT--EITAASGDIDLEDLIAQ 533 Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569 E + V +S+ G+++ + + SA KE D ++ L A+T D IL S+ Sbjct: 534 EDVVVTLSHEGYVKYQPLTDYEAQRRGGKGKSATKMKEEDFIEKLLVANTHDTILCFSSR 593 Query: 570 GKAYTLPAGNL-LSGRG-HGEAIQLLIDLNHNQDI-----VTAFVYDSTCKLLVVSSKG 621 G+ Y L L + RG G I ++ L N+ I V+A+ D K +V+++ G Sbjct: 594 GRLYWLKVYQLPQASRGARGRPIVNILPLQENERITAILPVSAYEED---KFVVMATAG 649 >gi|229846834|ref|ZP_04466941.1| DNA gyrase subunit A [Haemophilus influenzae 7P49H1] gi|229810323|gb|EEP46042.1| DNA gyrase subunit A [Haemophilus influenzae 7P49H1] Length = 884 Score = 400 bits (1029), Expect = e-109, Method: Compositional matrix adjust. Identities = 252/659 (38%), Positives = 378/659 (57%), Gaps = 64/659 (9%) Query: 13 VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72 ++ ++ V++ L+ YL YA+S I RA+PD+RDG KPVHRR++ +M G + Sbjct: 5 IQSSITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDREGNTANKKY 64 Query: 73 KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132 KSAR+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG+IDGD+ AA RYT Sbjct: 65 VKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRYT 124 Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192 E RM ++ + +L +D++ V+F Y+ E P V P++ P LLANG+SGIAVGMAT+IP Sbjct: 125 EVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPALLANGSSGIAVGMATNIP 184 Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252 HN+ E+ LA IDN EI+I++L+++I GPDFPT +I R+ I E+YR GRG V Sbjct: 185 PHNLNEVLNGCLAYIDNNEITIDELMQHIPGPDFPTAALI-NGRKGIEEAYRTGRGKVYV 243 Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRI 311 RAR VE +G I+V+E+PYQV K++L+EKIAELI K+I + +I D S E +RI Sbjct: 244 RARATVETNEKGREQIIVSELPYQVNKAKLVEKIAELIREKKIEGISNITDLSNKEGIRI 303 Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371 + K R ++++ ++ L+ M+ F +NM L G+ P++ L I++ ++ HRREV Sbjct: 304 EIDIK-RDAVGEVVLNHLYSLTQMQVTFGINMVALDHGQ-PRLFNLKEIIESFVLHRREV 361 Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSR-------- 420 + RRS F ++ R IL+GL +A NIDE+IAIIRN ++ + SR Sbjct: 362 VTRRSIFELRKARERTHILEGLAVARSNIDEMIAIIRNSKNREEAATAISSRSWTLHSDI 421 Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457 + L+ QV+AIL LRL L + ++ E + LL + Sbjct: 422 INLLDVSARPDELEENLGIQGEQYYLSPAQVNAILELRLHRLTGIAFEEVIKEYEELLVK 481 Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517 + +L+S ++ I E+ EVK F G R T E++ A + +I + Sbjct: 482 IADLLHILSSAERLMEVIREELEEVKAQF------GDDRLT--EITAASGDIDLEDLIAQ 533 Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569 E + V +S+ G+++ + + SA KE D ++ L A+T D IL S+ Sbjct: 534 EDVVVTLSHEGYVKYQPLTDYEAQRRGGKGKSATKMKEEDFIEKLLVANTHDTILCFSSR 593 Query: 570 GKAYTLPAGNL-LSGRG-HGEAIQLLIDLNHNQDI-----VTAFVYDSTCKLLVVSSKG 621 G+ Y L L + RG G I ++ L N+ I V+A+ D K +V+++ G Sbjct: 594 GRLYWLKVYQLPQASRGARGRPIVNILPLQENERITAILPVSAYEED---KFVVMATAG 649 >gi|148825854|ref|YP_001290607.1| DNA gyrase subunit A [Haemophilus influenzae PittEE] gi|319896958|ref|YP_004135153.1| DNA gyrase (type ii topoisomerase), subunit a [Haemophilus influenzae F3031] gi|148716014|gb|ABQ98224.1| DNA gyrase subunit A [Haemophilus influenzae PittEE] gi|317432462|emb|CBY80818.1| DNA gyrase (type II topoisomerase), subunit A [Haemophilus influenzae F3031] Length = 882 Score = 400 bits (1029), Expect = e-109, Method: Compositional matrix adjust. Identities = 252/659 (38%), Positives = 378/659 (57%), Gaps = 64/659 (9%) Query: 13 VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72 ++ ++ V++ L+ YL YA+S I RA+PD+RDG KPVHRR++ +M G + Sbjct: 5 IQSSITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDREGNTANKKY 64 Query: 73 KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132 KSAR+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG+IDGD+ AA RYT Sbjct: 65 VKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRYT 124 Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192 E RM ++ + +L +D++ V+F Y+ E P V P++ P LLANG+SGIAVGMAT+IP Sbjct: 125 EVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPALLANGSSGIAVGMATNIP 184 Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252 HN+ E+ LA IDN EI+I++L+++I GPDFPT +I R+ I E+YR GRG V Sbjct: 185 PHNLNEVLNGCLAYIDNNEITIDELMQHIPGPDFPTAALI-NGRKGIEEAYRTGRGKVYV 243 Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRI 311 RAR VE +G I+V+E+PYQV K++L+EKIAELI K+I + +I D S E +RI Sbjct: 244 RARATVETNEKGREQIIVSELPYQVNKAKLVEKIAELIREKKIEGISNITDLSNKEGIRI 303 Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371 + K R ++++ ++ L+ M+ F +NM L G+ P++ L I++ ++ HRREV Sbjct: 304 EIDIK-RDAVGEVVLNHLYSLTQMQVTFGINMVALDHGQ-PRLFNLKEIIESFVLHRREV 361 Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSR-------- 420 + RRS F ++ R IL+GL +A NIDE+IAIIRN ++ + SR Sbjct: 362 VTRRSIFELRKARERTHILEGLAVARSNIDEMIAIIRNSKNREEAATAISSRSWTLHSDI 421 Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457 + L+ QV+AIL LRL L + ++ E + LL + Sbjct: 422 INLLDVSARPDELEENLGIQGEQYYLSPAQVNAILELRLHRLTGIAFEEVIKEYEELLVK 481 Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517 + +L+S ++ I E+ EVK F G R T E++ A + +I + Sbjct: 482 IADLLHILSSAERLMEVIREELEEVKAQF------GDDRLT--EITAASGDIDLEDLIAQ 533 Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569 E + V +S+ G+++ + + SA KE D ++ L A+T D IL S+ Sbjct: 534 EDVVVTLSHEGYVKYQPLTDYEAQRRGGKGKSATKMKEEDFIEKLLVANTHDTILCFSSR 593 Query: 570 GKAYTLPAGNL-LSGRG-HGEAIQLLIDLNHNQDI-----VTAFVYDSTCKLLVVSSKG 621 G+ Y L L + RG G I ++ L N+ I V+A+ D K +V+++ G Sbjct: 594 GRLYWLKVYQLPQASRGARGRPIVNILPLQENERITAILPVSAYEED---KFVVMATAG 649 >gi|120598757|ref|YP_963331.1| DNA gyrase subunit A [Shewanella sp. W3-18-1] gi|146293166|ref|YP_001183590.1| DNA gyrase subunit A [Shewanella putrefaciens CN-32] gi|120558850|gb|ABM24777.1| DNA gyrase subunit A [Shewanella sp. W3-18-1] gi|145564856|gb|ABP75791.1| DNA gyrase subunit A [Shewanella putrefaciens CN-32] gi|319426322|gb|ADV54396.1| DNA gyrase, A subunit [Shewanella putrefaciens 200] Length = 917 Score = 400 bits (1029), Expect = e-109, Method: Compositional matrix adjust. Identities = 251/659 (38%), Positives = 376/659 (57%), Gaps = 64/659 (9%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 ++ +++ L+ YL YA+S I RA+PD+RDG KPVHRR++ AMSE+ D+ +KKS Sbjct: 7 SISPINIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELKNDWNKPYKKS 66 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 AR+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG++DGDSAAA RYTE R Sbjct: 67 ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYTLVDGQGNFGSVDGDSAAAMRYTEIR 126 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 M ++A +L ++++ VDF Y+ + P V P++ PNLL NG+SGIAVGMAT+IP HN Sbjct: 127 MDKLAHQLLADLEKETVDFVPNYDGTEQIPAVLPTRVPNLLINGSSGIAVGMATNIPPHN 186 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 + E+ + LALI+ P +SIE+L+EYI GPDFPT II R+ I+++Y+ GRG +RA Sbjct: 187 LTEVVKGCLALIEEPSLSIEQLMEYIPGPDFPTAAII-NGRKGIIDAYKTGRGRAIMRAL 245 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314 +E G I+VTEIPYQV K+RLIEKIAEL+ K++ + +RDES +D +RIV+ Sbjct: 246 ADIETEDNGRERIIVTEIPYQVNKARLIEKIAELVKDKKLEGISGLRDESDKDGMRIVIE 305 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K R ++++ +++ + M+ F +NM L+ G+ P++ L +L+ ++ HRREV+ R Sbjct: 306 IK-RGEVGEVVLNNLYAQTQMQCSFGINMVALTNGQ-PKLFNLKEMLECFILHRREVVTR 363 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV---------------- 418 R+ F ++ R IL+ L +A NID IIA+I+ P V Sbjct: 364 RTVFELRKARERAHILEALAVALANIDPIIALIKASPTPADAKVKLVEQGWELGHVQGML 423 Query: 419 ---------------------SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457 ++ LTE Q AIL LRL L LE +I +E + LL Sbjct: 424 EKAGDDAARPEWLEPQYGIRDGQYFLTEQQAQAILELRLHRLTGLEHDKIIAEYEELLEF 483 Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517 + +L S ++ I E+ E+ T+ G R T + D + + +I + Sbjct: 484 IAGLLFILRSPERLMEVIKEELEEI------LTEYGDARRTVINANEIDMSL--EDLINE 535 Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569 E + V +S+ G+ + + + +A K+ D ++ L A+T D IL S Sbjct: 536 EDVVVTLSHLGYAKYQPLSDYQAQRRGGKGKAATKVKDEDFVEKLLVANTHDTILCFSDF 595 Query: 570 GKAYTLPAGNL-LSGR-GHGEAIQLLIDLNHNQDIVTAFV----YDSTCKLLVVSSKGN 622 GK Y L L L+ R G I L+ L+ + I TA + Y + +++ +S G Sbjct: 596 GKMYWLKVYQLPLASRTARGRPIVNLLPLSDGERI-TAILPVREYAADKYIIMATSNGT 653 >gi|126642661|ref|YP_001085645.1| DNA gyrase [Acinetobacter baumannii ATCC 17978] Length = 881 Score = 400 bits (1029), Expect = e-109, Method: Compositional matrix adjust. Identities = 263/716 (36%), Positives = 402/716 (56%), Gaps = 76/716 (10%) Query: 35 LSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSV 94 +S I RA+PD+RDG KPVHRR+++AM E+G D+ A+KKSAR+VG+VIGK HPHGD +V Sbjct: 1 MSVIVSRALPDVRDGLKPVHRRVLYAMHELGNDYNKAYKKSARVVGDVIGKYHPHGDSAV 60 Query: 95 YDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDF 154 Y+++VR+AQ F RY L+ GQGNFG+IDGDSAAA RYTE RMT++A +L +++D VD+ Sbjct: 61 YETIVRMAQDFSLRYLLVDGQGNFGSIDGDSAAAMRYTEVRMTKLAHELLADLEKDTVDW 120 Query: 155 RDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISI 214 D Y+ + P V P++ PNLL NG +GIAVGMAT++ HN+ E+ A LA DNP ISI Sbjct: 121 EDNYDGSERIPEVLPTRVPNLLINGAAGIAVGMATNMAPHNMTEVVNACLAYADNPNISI 180 Query: 215 EKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGR-GSWCIVVTEI 273 E L+EYI GPDFPTGGII + IV++YR G+G +R ++ EE + G IV TEI Sbjct: 181 EGLMEYITGPDFPTGGIIY-GKSGIVDAYRTGKGRLHIRGKYHFEEDEKTGRTTIVFTEI 239 Query: 274 PYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFPKNRSLDPDLLMESIFML 332 PYQV K+R+IE+IAEL+ K++ + ++RDES E +RI + K R + ++++ ++F+ Sbjct: 240 PYQVNKARVIERIAELVKEKKLEGISELRDESDKEGMRIAIDLK-RGENAEVVVNNLFLN 298 Query: 333 SDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKG 392 + +E F +NM L G+ P++M L I+ ++ HR+EV+ RR+ F ++ R IL+G Sbjct: 299 TQLENSFSINMVCLDNGQ-PKLMNLKDIIAAFIRHRQEVVTRRTMFELRKARERGHILEG 357 Query: 393 LLIAYLNIDEIIAIIRN----------------------------------------EDK 412 L +A NIDEII I+ ED Sbjct: 358 LTVALANIDEIIETIKTSANPAEARERLLAGEWAGGGVVALLEKAGAISVRPDEIEGEDP 417 Query: 413 PKPVMVSR--FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQ 470 +P +S + L+ QV AIL LRL L LE+ ++ +E +L + ++ ++LN Sbjct: 418 NRPFGLSDSIYRLSPTQVGAILELRLHRLTGLEQDKLHAEYTEILGQIAELTAILND--- 474 Query: 471 QWNQIACEIR-EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW 529 +N + IR E+ ++ + D RRT E SR D ++ +I +E + + +S G+ Sbjct: 475 -FNLLMGVIREELAQVLQQYGDA--RRTEIVE-SRVD--FCREDLIPEEQVVLTVSQTGY 528 Query: 530 IRS--LKSHSVDL------SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL- 580 ++ L + SA K+ D ++ + A +L + GK Y L + Sbjct: 529 AKTQPLSDYQAQRRGGRGKSATSMKDDDFIQHLIVASNHATVLCFTNVGKVYRLKVFEVP 588 Query: 581 LSGRG-HGEAIQLLIDLNHNQDIVTAFV----YDSTCKLLVVSSKGNAFIVEESEIIANT 635 + RG G I L+ L+ + VTA + + + + ++ G V E E AN Sbjct: 589 QASRGAKGRPIVNLLPLDATE-TVTAILPLTEFPENHYVFMATASGTVKRV-ELEQFANI 646 Query: 636 R-KGKTFLKVSSEEKMKLVVKVTGDHVAVVGENR-KLLIFSIDQIPEMSR-GKGVR 688 R G ++++ E+ + V G+ ++ N K + F+ + M R KGVR Sbjct: 647 RSNGLRAIELNEEDTLIGVAITDGNQQIMLFSNEGKAIRFAETDVRAMGRTAKGVR 702 >gi|254797277|ref|YP_003082119.1| DNA gyrase, A subunit [Neorickettsia risticii str. Illinois] gi|254590518|gb|ACT69880.1| DNA gyrase, A subunit [Neorickettsia risticii str. Illinois] Length = 869 Score = 400 bits (1029), Expect = e-109, Method: Compositional matrix adjust. Identities = 228/623 (36%), Positives = 363/623 (58%), Gaps = 49/623 (7%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 V+L L+ YL+YA+S I RAIPD+RDG KPVHRRI+++M+E+ + ++KSAR++ Sbjct: 7 VNLEQELKSSYLSYAMSVIINRAIPDVRDGLKPVHRRILYSMNELSFYWNKPYRKSARVI 66 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 GEVIGK HPHGD ++YD+LVR+AQ F PLI GQGNFG+IDGD AAA RYTE R+ + Sbjct: 67 GEVIGKYHPHGDSAIYDALVRMAQNFSLLVPLIDGQGNFGSIDGDPAAAMRYTEVRLEYI 126 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 ++ +L + E++VDFR Y+ ++EPVV P+KFPN+L NGT+G+AVGMAT++P+HN+ E+ Sbjct: 127 SKFLLDDLYENSVDFRSNYDNSETEPVVLPAKFPNILVNGTAGVAVGMATNVPTHNLSEV 186 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 EA ++N ++ ++LL+ I GPDFPTGG+I+ E I S+ G+G +R++ E Sbjct: 187 IEACKLYLENNNVTTDELLKVIKGPDFPTGGLII-GEEGIKASFETGKGSIIIRSKTHFE 245 Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFPKNR 318 E I+V E+PYQV K++LIE IA L+ KR+ + D+RDES E +R+V+ K R Sbjct: 246 ET-ETRKAIIVDELPYQVNKAKLIENIALLVKEKRLDSISDLRDESNKEGIRVVIELK-R 303 Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378 ++++ +F ++ ++T + NM +L R P +M L IL ++AHR+EV+ RR+ F Sbjct: 304 GASFEVVLNQLFQMTQLQTSYSTNMMLLDNMR-PTLMSLRDILAAFIAHRKEVISRRTEF 362 Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIR----NEDKPKPVMVSRFSLTEN-------- 426 R+ + +L L +A LNIDE++ I++ NE K + +++ E Sbjct: 363 RLAKAREKANVLVALYVAILNIDEVVRILKSSGDNETAVKALCAKHWTIDEELELLVETI 422 Query: 427 ---------------QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQ 471 Q AIL ++++ + E+ Q+ +E+ + ++ S+L S Sbjct: 423 SNIKLLNREYKLSTAQSKAILEMKMQRITNTEKGQLVAEIHAEMDIVKECASILGSEAVL 482 Query: 472 WNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR 531 N I E+ E+K + ++ R++ + A A ++ +IE+E + V + G+I+ Sbjct: 483 TNVIVQELNEIKAKYPQA-----RKSIILKNVNAVYA--EEDLIEREQVVVTATYSGYIK 535 Query: 532 SLKSHSVDLS--------ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG 583 ++ + + A + K D L T D IL S+ GK Y L A L G Sbjct: 536 RVQISNYRVQRRGGKGRIAQNIKSEDQLAQIFVLSTHDEILFFSSKGKVYKLKAYKLPIG 595 Query: 584 --RGHGEAIQLLIDLNHNQDIVT 604 + G A+ + DL ++ I + Sbjct: 596 EPQSRGRALVNIFDLADDESITS 618 >gi|163748935|ref|ZP_02156186.1| DNA gyrase, A subunit [Shewanella benthica KT99] gi|161331311|gb|EDQ02199.1| DNA gyrase, A subunit [Shewanella benthica KT99] Length = 907 Score = 400 bits (1029), Expect = e-109, Method: Compositional matrix adjust. Identities = 246/637 (38%), Positives = 364/637 (57%), Gaps = 59/637 (9%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 ++ +++ L+ YL YA+S I RA+PD+RDG KPVHRR++ AMSE+ D+ +KKS Sbjct: 7 SITPINIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELKNDWNKPYKKS 66 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 AR+VG+VIGK HPHGD +VYD++VR+AQPF RY LI GQGNFG++DGD+AAA RYTE R Sbjct: 67 ARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSMRYTLIDGQGNFGSVDGDAAAAMRYTEIR 126 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 M ++A +L ++++ VDF Y+ + P V P++ P LL NG+SGIAVGMAT+IP HN Sbjct: 127 MDKLAHQLLADLEKETVDFVPNYDGTEFIPEVMPTRIPTLLINGSSGIAVGMATNIPPHN 186 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 + E+ + LALI+ P +SIE+L+EYI GPDFPT II R+ I+E+Y+ GRG +R++ Sbjct: 187 ITEVIKGCLALIEEPALSIEQLMEYIPGPDFPTAAII-NGRKGIIEAYKTGRGRAIMRSK 245 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314 V+ G I+V E+PYQV K+RLIEKIAEL+ K+I + +RDES +D +RIV+ Sbjct: 246 ADVQVEDNGRERIIVHELPYQVNKARLIEKIAELVKDKKIEGITGLRDESDKDGMRIVIE 305 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K R ++++ +++ + M+ F +NM L+ G+ P++ L +L+ ++ HRREV+ R Sbjct: 306 IK-RGEVGEVVLNNLYAQTQMQCSFGINMVALTNGQ-PKLFNLKEMLECFILHRREVVTR 363 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV---------------- 418 R+ F ++ R IL+ L IA NID IIA+I+ P V Sbjct: 364 RTVFELRKARERAHILESLAIALANIDPIIAMIKASSTPAEAKVKLVAQGWELGHVKAML 423 Query: 419 ---------------------SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457 R+ LTE Q AIL+LRL L LE +I +E + L+ Sbjct: 424 EKAGDDAARPEWLEPEYGIRDDRYYLTEQQAQAILDLRLHKLTGLEHEKILAEYEELIEI 483 Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517 + +L+S ++ I E+ E+ E F G R T + D + + +I + Sbjct: 484 IAALLYILHSPERLLEVIKEELNEILENF------GDERRTVINANEVDMSL--EDLINE 535 Query: 518 EPITVVISNRGWIR--SLKSHSVDLS------ALHFKEGDSLKIALHAHTTDRILLLSTD 569 E + V +S+ G+ + L + A K+ D ++ L A+T D IL S Sbjct: 536 EDVVVTLSHLGYAKYQPLTDYQAQRRGGKGKLAAKVKDEDFVEKLLVANTHDTILCFSDF 595 Query: 570 GKAYTLPAGN--LLSGRGHGEAIQLLIDLNHNQDIVT 604 GK Y L L S + G I L+ L+ + I Sbjct: 596 GKLYWLKVYQLPLASRQARGRPIVNLLPLSEGEHITA 632 >gi|312129654|ref|YP_003996994.1| DNA gyrase subunit a [Leadbetterella byssophila DSM 17132] gi|311906200|gb|ADQ16641.1| DNA gyrase subunit A [Leadbetterella byssophila DSM 17132] Length = 837 Score = 400 bits (1029), Expect = e-109, Method: Compositional matrix adjust. Identities = 244/686 (35%), Positives = 395/686 (57%), Gaps = 54/686 (7%) Query: 30 YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89 Y+ Y++S I RA+PD+RDGFKPVHRR++ MSE+G+ +KKSARIVGEV+GK HPH Sbjct: 27 YIDYSMSVIVSRALPDVRDGFKPVHRRVLFGMSELGVYHNRPYKKSARIVGEVLGKYHPH 86 Query: 90 GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDE 149 GD SVYD++VR+AQ + RYPL+ GQGNFG++DGDS AA RYTEAR+ ++AE +L +++ Sbjct: 87 GDSSVYDTMVRMAQDWSLRYPLVDGQGNFGSVDGDSPAAMRYTEARLRRIAEEMLADINK 146 Query: 150 DAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDN 209 + VDFR +++ EP V PS+ PNLL NGTSGIAVGMAT++ HN+ E+ E A IDN Sbjct: 147 ETVDFRGNFDDSLQEPTVLPSRIPNLLLNGTSGIAVGMATNMAPHNLSEVTEGITAYIDN 206 Query: 210 PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIV 269 PEI+IE+L+ +I PDFPT G I+ + ++ GRG +R+ E G IV Sbjct: 207 PEITIEELMHFIKAPDFPT-GGIIYGYGGVKAAFETGRGRVVIRSVANFEVSKTGKEQIV 265 Query: 270 VTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESI 329 VTEIPY V K+ +IEK AEL+ K+I + IRDES +++ + P++++ ++ Sbjct: 266 VTEIPYLVNKAAMIEKTAELVNDKKIEGISGIRDESDRQGLRIVYDLKKDAVPNVVLNNL 325 Query: 330 FMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEI 389 + + ++T F +N L G+ P+ + L +++ ++ HR +V+ RR+ + ++ ++R I Sbjct: 326 YKYTQLQTSFSINNVALVHGK-PETLNLKQLIEHYVKHRLDVITRRTQYDLREAEKRAHI 384 Query: 390 LKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVDAILNLRLRSLRKLEEYQ 446 L+GLLIA ++DE+I++IR+ P ++ +F+L+E Q AIL++RL+ L LE + Sbjct: 385 LEGLLIALDHLDEVISLIRSSKDPDEARNGLMEKFALSEIQARAILDMRLQRLTGLERDK 444 Query: 447 IKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRAD 506 I E + A E+++++L S +++ + I ++ ++K T G R + E+ + Sbjct: 445 ITEEYKQIKALIEELNAILASEEKKKDLIKADLLDIK------TKYGDERRSKIEMVGGE 498 Query: 507 KATLQQAMIEKEPITVVISNRGWIR-----SLKSHS---VDLSALHFKEGDSLKIALHAH 558 + MI + + V ++++G+I+ KS S + K+ D + A Sbjct: 499 FNI--EDMIPDDEMLVTVTSQGYIKRTNLSEYKSQSRGGTGSRGVKTKDDDYTEHLFMAT 556 Query: 559 TTDRILLLSTDGKAYTL-----PAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613 + +L + G+ Y L P GN S G AIQ LI++ + D Sbjct: 557 NHNYLLFFTEKGRLYWLRVFEVPEGNKTS---KGRAIQNLINIESD---------DKIRA 604 Query: 614 LLVVSSKGNAFIVEESEIIANTRKG---KTFLKVSSEEKMKLVVKVT---GDH---VAVV 664 +L V + + ++ + I+ T+ G KT L++ S + ++ + GD VA+ Sbjct: 605 VLNVKTLSDEDYIKNNYIVMCTQNGIVKKTLLEMYSRPRQNGIIAININEGDQLIDVALT 664 Query: 665 GENRKLLIFSIDQIPEMSRGKGVRLQ 690 N ++I + +GK VR Sbjct: 665 NGNDYIIIAA-------GQGKAVRFH 683 >gi|282901150|ref|ZP_06309081.1| DNA gyrase, subunit A [Cylindrospermopsis raciborskii CS-505] gi|281193982|gb|EFA68948.1| DNA gyrase, subunit A [Cylindrospermopsis raciborskii CS-505] Length = 838 Score = 400 bits (1029), Expect = e-109, Method: Compositional matrix adjust. Identities = 266/771 (34%), Positives = 409/771 (53%), Gaps = 53/771 (6%) Query: 10 NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69 N L V + +L ++ YL YA+S I RA+PD+RDG KPVHRRI++AM E+GL Sbjct: 6 NLLNTGQVVSTALHTEMQRSYLEYAMSVIVGRALPDVRDGLKPVHRRILYAMHELGLTPD 65 Query: 70 AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129 ++K AR+VG+V+GK HPHGDQ+VYD+LVRL Q F RYPL+ G GNFG++D D AA Sbjct: 66 RPYRKCARVVGDVLGKYHPHGDQAVYDALVRLVQDFSSRYPLLGGHGNFGSVDNDPPAAM 125 Query: 130 RYTEARMTQVA-ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188 RYTE R+ + E +L+ + E+ V+F ++ EP V P++ P LL NG +GIAVGMA Sbjct: 126 RYTETRLAPIGHEAMLREIGEETVEFVGNFDNSQQEPTVLPAQLPFLLINGCAGIAVGMA 185 Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248 T+IP HN+ EI + +ALID+P+++ EKLLE I GPDFPTGG IV S I E+Y G+G Sbjct: 186 TNIPPHNLGEIVDGLIALIDHPDLTEEKLLELIPGPDFPTGGQIVGS-GGIKEAYNTGKG 244 Query: 249 GFRVRARWCVEEV-----GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303 G +R +E++ GR I+VTE+PYQV K+ IEK+A+L+ R+ + D+RD Sbjct: 245 GIILRGVVSLEDIVSTRGGRRRTAIIVTELPYQVNKAGWIEKVADLVNQGRLHGISDLRD 304 Query: 304 ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363 ES V+ R +P+ ++ ++ + ++T F + L G+ P+ + L +L+E Sbjct: 305 ESDRQGMRVVIELKRDANPEEVIGQLYHQTALQTTFGAILLALVEGQ-PRQLSLRQMLQE 363 Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSR 420 +L R + L RR S+ + + R I+ GLL A +DE+I I+R K V+ + Sbjct: 364 FLRFREDTLNRRYSYELGKAENRASIVAGLLKALFAVDEVITILRQSPDGSTAKMVLCQQ 423 Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480 LTE Q DAIL + LR L LE ++ E D L + + LL ++ + ++R Sbjct: 424 LDLTETQADAILAMPLRRLTSLERQNLQEEFDQLNEQITSLRRLLEDRRELLKSLKKDLR 483 Query: 481 EVKEIFSKSTDLGRRRTTFCE---VSRADKATLQ-------------QAMIEKEPITVVI 524 +K + + RRT +ADK Q Q EP + Sbjct: 484 TIKRKYGDT-----RRTKLIPGQIAVKADKVNNQPSSPGEKEKSKISQEEQPPEPAILEF 538 Query: 525 SNRGWIRSLKSHSVDLSALHFKEGDSLKIALH-AHTTDRILLLSTDGKAYTLPAGNL--L 581 ++RG++R L S A + I +T +L+L+T GK Y G++ + Sbjct: 539 THRGYVRRLAPGSKKAKAETIMGDNDFLIQTEITNTHQDLLILNTSGKVYPAKVGDISPI 598 Query: 582 SGRGHGEAIQLLIDLNHN-----QDIVTAFVY---DSTCKLLVVSSKGNAFIVEESEIIA 633 S R I L+ L + + I+ F T +++V+ +G + E+ Sbjct: 599 SPRSP-RGIPLITLLTNTAQGNVEGILGRFTLPETKDTHDMVIVTKQGRIKRISLEELTN 657 Query: 634 NTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGEN-RKLLIFSI--DQIPEMSRGKGVRLQ 690 +++G T LKV ++++ +H ++ + + L F+I DQ+P M RG + LQ Sbjct: 658 VSKRGITILKVKDDDQLCFAQLTNPNHNLILASSGGRCLRFAINDDQLPVMGRG-AMGLQ 716 Query: 691 SYKDGGISDVI-CFKIC--EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGS 738 S++ +I C I E L + G + S + L G RG +G+ Sbjct: 717 SFRILKSQQIIGCVAIGQEENLLLVTQEGYAKKISSSSL--RAGNRGDLGT 765 >gi|229816231|ref|ZP_04446541.1| hypothetical protein COLINT_03281 [Collinsella intestinalis DSM 13280] gi|229808239|gb|EEP44031.1| hypothetical protein COLINT_03281 [Collinsella intestinalis DSM 13280] Length = 929 Score = 400 bits (1029), Expect = e-109, Method: Compositional matrix adjust. Identities = 250/708 (35%), Positives = 398/708 (56%), Gaps = 44/708 (6%) Query: 26 LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85 +++ ++ Y++S I RA+PD+RDG KPVHRRI++AM+E G+ KKSA VGEVIGK Sbjct: 81 MKQSFIEYSMSVITARALPDVRDGLKPVHRRILYAMNESGIFPNRPHKKSAWTVGEVIGK 140 Query: 86 LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145 HPHGD +VYD++VRLAQ F R PLI G GNFGNIDGD AAA RYTE+R+ + A +L+ Sbjct: 141 YHPHGDSAVYDTMVRLAQWFSMRTPLIDGHGNFGNIDGDGAAAMRYTESRLAKPAMELLR 200 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 + +D VD++ Y+E +EP P++FPNLL NG+ GIAVGMAT+I HN+ E EA Sbjct: 201 DLQKDTVDWQPNYDESLAEPTALPARFPNLLVNGSQGIAVGMATNIAPHNMGEAVEATCY 260 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265 LID+P+ ++++L+ + GPDFPTG +I+ + + I +SY GRG VRA+ VE G Sbjct: 261 LIDHPDATVDELMRIMPGPDFPTGALIMGT-DGIRQSYETGRGSITVRAKAHVESTKTGR 319 Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325 +V TEIPY V K L EKIA L+ KRI + D+RDES + ++ + + P ++ Sbjct: 320 NRLVFTEIPYMVNKGTLQEKIASLVNEKRIEGISDMRDESTQKGLRLVIELKKGVIPQVV 379 Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385 + +++ + ++T F N N+ + +P+ + L +L+ ++ H+ +V+ RR+ F ++ Sbjct: 380 LNNLYKYTSLQTTFGAN-NLALVNGIPKRLSLREMLQHYIDHQVDVVTRRTRFDLKKAQA 438 Query: 386 RVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLTENQVDAILNLRLRSLRKL 442 R IL+G L A +IDE+I+IIR+ + + ++ RF + Q AIL ++LR L L Sbjct: 439 RAHILEGYLKALDHIDEVISIIRSSQTDAEASSRLIERFGFSPEQTTAILEMKLRRLTGL 498 Query: 443 EEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEV 502 E +I+ EL+ L + LL ++ I E+RE+ F +RRT ++ Sbjct: 499 ERDKIEEELEGLRRAIAYYEDLLAHEEKILGVIKEEMREIARKFGD-----KRRT---QI 550 Query: 503 SRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIA 554 + A+K + +I E + V I++ G++ R+ K +S ++ KE D + Sbjct: 551 TGAEKDLNVEDLIADEDMVVTITHTGYVKRIPVESYRAQKRGGKGVSGVNLKEDDVIDEM 610 Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQDIVTAFVYDSTC 612 A T + +L ST GK Y L L G + G AI L+ + I + +C Sbjct: 611 FIASTHEYVLFFSTKGKVYRLKVHELPEGTRQARGTAIVNLLPFEDGEKIASVI----SC 666 Query: 613 K-------LLVVSSKGNAFIVEESEIIA---NTRKGKTFLKVSSEEKMKLVVKVT-GDHV 661 + L+ ++ G +V+++ + A + R G + + +++ V +V GD + Sbjct: 667 REFPEDEYLMFATAHG---MVKKTAMAAYDRSRRDGIIAINIKDGDRLLGVRRVKPGDKI 723 Query: 662 AVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVICFKICEG 708 + K ++FS DQ+ R GVR K ++V+ +I G Sbjct: 724 IMATTAGKAIMFSEDQVRATGRDTSGVRGIGMK--ADAEVLGMEITNG 769 >gi|260437694|ref|ZP_05791510.1| DNA gyrase, A subunit [Butyrivibrio crossotus DSM 2876] gi|292809920|gb|EFF69125.1| DNA gyrase, A subunit [Butyrivibrio crossotus DSM 2876] Length = 835 Score = 400 bits (1029), Expect = e-109, Method: Compositional matrix adjust. Identities = 231/607 (38%), Positives = 360/607 (59%), Gaps = 30/607 (4%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 + V V L+ +E+ Y+ YA+S I RA+PD+RDG KPV RRI+ +MSE+G +K Sbjct: 7 DKVHEVDLKKTMEDSYIDYAMSVIAARALPDVRDGLKPVQRRILFSMSELGNGPDKPHRK 66 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 ARIVG+ +GK HPHGD S+Y++LV+LAQ F RYPL+ G GNFG+IDGD AAA RYTEA Sbjct: 67 CARIVGDTMGKYHPHGDSSIYEALVKLAQDFNTRYPLVDGHGNFGSIDGDGAAAMRYTEA 126 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 R+T+++ +L + +D VDF ++E + EPVV PS++PNLL NGTSGIAVGMAT+IP H Sbjct: 127 RLTKLSMEMLADIGKDTVDFIPNFDETEKEPVVLPSRYPNLLVNGTSGIAVGMATNIPPH 186 Query: 195 NVQEICEAALALIDN-----PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249 N++E+ +A L +IDN + +I++L+E + GPDFPTG I+ + I E+YR GRG Sbjct: 187 NLREVIKAVLKIIDNRVLEDKDTTIDELMEIVKGPDFPTGATIL-GKSGIEEAYRTGRGK 245 Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AED 308 RVRA + + G I++TE+PY V K+ LI+KIAEL+ K+I + I D+S + Sbjct: 246 IRVRAVSEINTLPNGKTEIIITELPYMVNKALLIQKIAELVKDKKIDGITGIIDQSNMQG 305 Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368 +R+ + + R ++ ++++ ++ + ++ F +NM L + P+V+ L +L +L H+ Sbjct: 306 IRVSIELR-RDVNANVILNQLYKHTQLQDTFGVNMLAL-VNNEPKVLNLHQMLTYYLEHQ 363 Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTE 425 EV+ RR+ + + R IL+GLLIA NIDE+I+IIR + K ++ RF L++ Sbjct: 364 EEVVTRRTKYELNKAQERAHILEGLLIALDNIDEVISIIRGSESVNVAKQKLIERFGLSD 423 Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485 Q AI+++RLR+L LE +I++E + L+ +++ ++L K+ I E+ I Sbjct: 424 AQSQAIVDMRLRTLTGLEREKIEAEYNELMKRIDELKAILADNKKLLMVIR---EELSII 480 Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHS 537 K D R + E + + MI E + ++N G+I RS Sbjct: 481 MDKYGDDRRTAIGYDEFDIS-----MEDMIPNESTVITMTNLGYIKRMTPDNFRSQNRGG 535 Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEAIQLLID 595 + + + D ++ L T + +L + G+ Y L A + +GR G AI L+ Sbjct: 536 RGIKGMQTIDDDYIEDILMTTTHNIVLFFTNKGRVYKLKAYEIPEAGRTARGTAIVNLLT 595 Query: 596 LNHNQDI 602 L + I Sbjct: 596 LQAGEKI 602 >gi|332798031|ref|YP_004459530.1| DNA gyrase subunit A [Tepidanaerobacter sp. Re1] gi|332695766|gb|AEE90223.1| DNA gyrase, A subunit [Tepidanaerobacter sp. Re1] Length = 807 Score = 400 bits (1028), Expect = e-109, Method: Compositional matrix adjust. Identities = 243/694 (35%), Positives = 395/694 (56%), Gaps = 33/694 (4%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 V + +++ Y+ Y++S I RA+PD+RDG KP+HRRI++AMS++ L +KSA IV Sbjct: 11 VKIEEEMKKSYIDYSMSVIVGRALPDVRDGLKPIHRRILYAMSQLSLTPDKPHRKSATIV 70 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 GEV+G HPHGD ++YD++VRLAQ F RY L+ G GNFG+IDGD AAA RYTEARMT++ Sbjct: 71 GEVMGNYHPHGDAAIYDAMVRLAQDFSTRYLLVDGHGNFGSIDGDPAAAMRYTEARMTRI 130 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 + +L +++D VDF Y+E EP V P++FPNLL NG+SGIAVGMAT+IP HN+ E+ Sbjct: 131 SLEMLSDLNKDTVDFIPNYDESLDEPSVLPARFPNLLVNGSSGIAVGMATNIPPHNLSEV 190 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 + + +IDNP++++E+L++ I GPDFPTGGII + I + Y GRG +RA+ +E Sbjct: 191 IDGVIMMIDNPDVTVEELMQVIKGPDFPTGGII-KGYSGIKDMYTTGRGSVVMRAKATIE 249 Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFPKNR 318 + I+VTEIPY V K+R++EKIAEL+ K+I + D+RDES + +RIV+ K R Sbjct: 250 AMDATRHRIIVTEIPYMVNKARMVEKIAELVRDKKIEGISDLRDESDRKGIRIVMDLK-R 308 Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378 +P +++ ++ + M++ F M L + P+V+ L ++ +L H+++V+ RR+ F Sbjct: 309 DANPHIILNQLYKHTQMQSTFGAIMLALVDNK-PRVLNLREMIYYYLEHQKDVIVRRTKF 367 Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAILNLR 435 + R+ IL+GL IA +IDE+IAIIR ++ + ++ F L+E Q IL++R Sbjct: 368 DLAKAQERIHILEGLKIALDHIDEVIAIIRGSKDDVTARDALIKNFGLSEKQAQVILDMR 427 Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495 L+ L LE +I E LL + + +L+ K + I E+ ++K+ + G Sbjct: 428 LKRLTALEREKIDEEYAELLKKIDYYQKILSDEKIVLSIIKEELIQIKQKY------GDE 481 Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKE 547 R T D + +I +E I + ++ G++ RS + ++ + +E Sbjct: 482 RRTHITHDEGDFDI--EDLIVEEDIVITQTHFGYVKRQPISAYRSQRRGGRGVTGITTRE 539 Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTA 605 D ++ T ++ + G Y L A + S G AI L+ L ++ + T Sbjct: 540 EDFVEHIFVGTTHHVVMFFTNKGNVYKLKAYEIPDTSRTARGTAIVNLLPLKPDERVNTM 599 Query: 606 FV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVA 662 +D L+ + G SE ++ R G + + ++++ V V + Sbjct: 600 ITIKDFDEARYLIFATKNGIVKKTLLSEYASSRRTGLIAITLKDDDELIGVRLVDRNEEI 659 Query: 663 VVGENRKLLI-FSIDQIPEMSRG----KGVRLQS 691 ++G + + I FS++ + R KG+ L+S Sbjct: 660 ILGTHNGMSIRFSVNDVSSTGRTSQGVKGINLRS 693 >gi|110679940|ref|YP_682947.1| DNA gyrase subunit A [Roseobacter denitrificans OCh 114] gi|109456056|gb|ABG32261.1| DNA gyrase, A subunit [Roseobacter denitrificans OCh 114] Length = 905 Score = 400 bits (1028), Expect = e-109, Method: Compositional matrix adjust. Identities = 246/675 (36%), Positives = 375/675 (55%), Gaps = 57/675 (8%) Query: 19 AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78 +VS+ + YL YA+S I RAIPDLRDG KPVHRRI+ AM E G ++KSAR Sbjct: 12 SVSIEQEMRTSYLDYAMSVIVSRAIPDLRDGLKPVHRRILFAMHETGNTHDKPYRKSARP 71 Query: 79 VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138 VG+V+G+ HPHGD ++YD+LVR+AQ F PL+ GQGNFG++DGD+ AA RYTE RM + Sbjct: 72 VGDVMGQYHPHGDSAIYDALVRMAQDFSMSLPLLDGQGNFGSMDGDNPAAMRYTEVRMDK 131 Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198 A +L +D+D VDF+D Y+ + EP V P++FPN+L NG GIAVGMAT+IP HN+ E Sbjct: 132 PAAYLLADIDKDTVDFQDNYDGKQKEPTVLPARFPNMLVNGAGGIAVGMATNIPPHNLGE 191 Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258 + +A LALI+ P+++ E+L++Y+ GPDFPTGGI++ R ++Y GRG +RA+ V Sbjct: 192 VIDATLALIEEPDLTSEQLIDYVPGPDFPTGGIML-GRGGARKAYLEGRGSVIIRAKTRV 250 Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKN 317 EE+ + W I+V EIPYQV K+ +IEKIAE + K+I + ++DES + VR+V+ K Sbjct: 251 EEIRKDRWAIIVDEIPYQVNKATMIEKIAEQVREKKIDGIAHVQDESDRNGVRVVIELK- 309 Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377 R +++M ++ + ++T F NM L+ GR P+ + L L ++ R +V+ RR++ Sbjct: 310 RDATAEVVMNQLYRFTPLQTYFGCNMLALNGGR-PEQLTLRKFLTYFIDFREDVVARRTA 368 Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE----DKPKPVMVSR------------- 420 + ++ R +L GL +A NIDE++A IR + + +M R Sbjct: 369 YLLRKARERSHVLCGLAVAVTNIDEVVATIRASADAAEAREKLMTRRWPAQDILPYIALI 428 Query: 421 ------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSG 468 ++L+E Q AIL+LRL+ L ++ ++ EL+ L + ++ +L S Sbjct: 429 DDPTHTANDDGTYNLSETQARAILDLRLQRLTQIGVKEVTDELEELAGKIKEYLEILGSR 488 Query: 469 KQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRG 528 + IA E+REV+E+F+ RRT + S + +I +E + V ++ G Sbjct: 489 DRIMGIIADELREVRELFAVP-----RRTEIVDWS---GDMEDEDLIAREDMVVTVTQGG 540 Query: 529 WI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL 580 +I RS + LS KE D + A+T ++L +TDG AY L L Sbjct: 541 YIKRTPLADFRSQRRGGKGLSGGSLKEDDVVTTLFVANTHTQLLFFTTDGMAYKLKTWRL 600 Query: 581 LSG--RGHGEAIQLLIDLNHNQDIVTAFVYD------STCKLLVVSSKGNAFIVEESEII 632 G G+AI ++ + I D S +++ +S G S+ Sbjct: 601 PQGARTSKGKAIVNILPIPQGVSIAAILPIDRDEKDWSQLQIVFATSAGTVRRNALSDFT 660 Query: 633 ANTRKGKTFLKVSSE 647 GK +K E Sbjct: 661 NVKSNGKIAMKFEDE 675 >gi|91793303|ref|YP_562954.1| DNA gyrase, A subunit [Shewanella denitrificans OS217] gi|91715305|gb|ABE55231.1| DNA gyrase subunit A [Shewanella denitrificans OS217] Length = 908 Score = 400 bits (1028), Expect = e-109, Method: Compositional matrix adjust. Identities = 241/606 (39%), Positives = 355/606 (58%), Gaps = 57/606 (9%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 ++ +++ L+ YL YA+S I RA+PD+RDG KPVHRR++ AMSE+ D+ +KKS Sbjct: 7 SISPINIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELKNDWNKPYKKS 66 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 AR+VG+VIGK HPHGD +VYD++VRLAQPF RY L+ GQGNFG++DGDSAAA RYTE R Sbjct: 67 ARVVGDVIGKYHPHGDSAVYDAIVRLAQPFSLRYTLVDGQGNFGSVDGDSAAAMRYTEIR 126 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 M ++A +L ++++ VDF Y+ + P V P++ PNLL NG+SGIAVGMAT+IP HN Sbjct: 127 MQKLAHSLLADLEKETVDFVPNYDGTEMIPAVLPTRVPNLLINGSSGIAVGMATNIPPHN 186 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 + E+ + LALID P +SIE+L+EYI GPDFPT I R+ I+++Y+ GRG +R++ Sbjct: 187 LTEVVKGCLALIDEPSLSIEQLMEYIPGPDFPTAASI-NGRKGIIDAYKTGRGRAVMRSK 245 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314 +E G I+V EIPYQV K+RLIEKIAEL+ K+I + +RDES +D +RIV+ Sbjct: 246 AEIETEDNGRERIIVHEIPYQVNKARLIEKIAELVKDKKIEGISGLRDESDKDGMRIVIE 305 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K R ++++ +++ + M+ F +NM L+ G+ P++ L +L+ ++ HRREV+ R Sbjct: 306 IK-RGEVGEVVLNNLYAQTQMQCSFGINMVALTNGQ-PKLFNLKEMLECFILHRREVVTR 363 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-------------------------- 408 R+ F ++ R IL+ L IA NID IIA+I+ Sbjct: 364 RTVFELRKARERAHILEALAIALANIDPIIALIKASPTPAEAKLQLVAQGWELGHVQGML 423 Query: 409 ---NEDKPKP--------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457 +D +P + ++ LTE Q AIL LRL L LE +I SE + LL Sbjct: 424 EKAGDDAARPEWLEPEYGIRDGQYFLTEQQAQAILELRLHRLTGLEHEKILSEYEELLIV 483 Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517 + +L S ++ I E+ EV E + G R T + D + + +I + Sbjct: 484 IAGLLLILRSPERLMEVIKEELEEVLEQY------GDVRRTIINENEIDMSL--EDLINE 535 Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569 E + V +S+ G+ + + + +A K+ D ++ L A+T D IL S Sbjct: 536 EDVVVTLSHTGYAKYQPLSDYQAQRRGGKGKAATKVKDEDFVEKLLVANTHDTILCFSDF 595 Query: 570 GKAYTL 575 GK Y L Sbjct: 596 GKMYWL 601 >gi|209527299|ref|ZP_03275809.1| DNA gyrase, A subunit [Arthrospira maxima CS-328] gi|209492287|gb|EDZ92632.1| DNA gyrase, A subunit [Arthrospira maxima CS-328] Length = 882 Score = 400 bits (1028), Expect = e-109, Method: Compositional matrix adjust. Identities = 234/581 (40%), Positives = 346/581 (59%), Gaps = 28/581 (4%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 E + LR +++ YL YA+S I RA+PD RDGFKPVHRRI++AM+E+GL F+ Sbjct: 5 ESRIIPTDLRNEMQQSYLEYAMSVIVGRALPDARDGFKPVHRRILYAMNELGLMPDRPFR 64 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 K AR+VGEV+GK HPHGD +VYD+LVR+AQ F R PLI G GNFG++D D AA RYTE Sbjct: 65 KCARVVGEVLGKYHPHGDTAVYDALVRMAQEFSMRSPLIQGHGNFGSVDNDPPAAMRYTE 124 Query: 134 ARMTQV-AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192 R+ + +E +L+ +D D VDF D ++ EP+V P++ P LL NG+SGIAVGMAT+IP Sbjct: 125 CRLHYLTSEAMLRDIDSDTVDFGDNFDGSQQEPLVLPARIPQLLLNGSSGIAVGMATNIP 184 Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252 HN+ E+ + +ALI NPEI+ +L+ YI GPDFPTG I+ R I E+Y GRG + Sbjct: 185 PHNLNELVDGLVALIHNPEITDTELMRYIPGPDFPTGAKIL-GRSGIREAYTTGRGSITM 243 Query: 253 RARWCVEEV---GRGSW-CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AE 307 R +E + GR I++TE+PYQ K+ LIEKIAE++ KR+ + DIRDES E Sbjct: 244 RGVAQIETIEHRGRPDREAIIITELPYQTNKAALIEKIAEMVNEKRLEGISDIRDESDRE 303 Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367 +RIV+ + R P +++ +++ + ++T F NM L G+ P+++ L L +L Sbjct: 304 GMRIVVELR-RDAYPRVVLNNLYKQTPLQTNFGANMLALVNGK-PELLTLKRYLHVFLDF 361 Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN-EDKP--KPVMVSRFSLT 424 R + + RR+ + + + R +L+GLLIA N+D IIA+IR+ D P K ++ RF L+ Sbjct: 362 RIDTIRRRTEYEKRKAEERDHLLQGLLIALDNLDAIIALIRHAADSPTAKQELIERFGLS 421 Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484 E Q DAIL ++LR L LE +I+ E LLA+ ++ +LN ++ + E +E+K+ Sbjct: 422 EPQADAILQMQLRRLTALEAQKIEQEHQELLAKIADLNDILNRRERILEIVEQEAQEIKQ 481 Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL---- 540 RRT + T +I E ++++ +G+I+ + ++ + Sbjct: 482 RHGTP-----RRTEIELEESELEDT---DLIANEKAIILLTEQGYIKRMPVNTFEAQNRA 533 Query: 541 ----SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPA 577 S KE D +K L D I+ + G AY L A Sbjct: 534 TRGKSGTKMKEDDGVKHFLSCCDHDSIMFFTERGVAYCLKA 574 >gi|15598364|ref|NP_251858.1| DNA gyrase subunit A [Pseudomonas aeruginosa PAO1] gi|254236130|ref|ZP_04929453.1| DNA gyrase subunit A [Pseudomonas aeruginosa C3719] gi|254241856|ref|ZP_04935178.1| DNA gyrase subunit A [Pseudomonas aeruginosa 2192] gi|313108480|ref|ZP_07794484.1| DNA gyrase subunit A [Pseudomonas aeruginosa 39016] gi|1346237|sp|P48372|GYRA_PSEAE RecName: Full=DNA gyrase subunit A gi|9949285|gb|AAG06556.1|AE004741_1 DNA gyrase subunit A [Pseudomonas aeruginosa PAO1] gi|459929|gb|AAA68625.1| gyrase A subunit [Pseudomonas aeruginosa PAO1] gi|126168061|gb|EAZ53572.1| DNA gyrase subunit A [Pseudomonas aeruginosa C3719] gi|126195234|gb|EAZ59297.1| DNA gyrase subunit A [Pseudomonas aeruginosa 2192] gi|310880986|gb|EFQ39580.1| DNA gyrase subunit A [Pseudomonas aeruginosa 39016] Length = 923 Score = 400 bits (1028), Expect = e-109, Method: Compositional matrix adjust. Identities = 236/604 (39%), Positives = 357/604 (59%), Gaps = 59/604 (9%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 V++ L++ YL YA+S I RA+PD RDG KPVHRR+++AMSE+G D+ +KKSAR+V Sbjct: 11 VNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMSELGNDWNKPYKKSARVV 70 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG++DGD+AAA RYTE RM ++ Sbjct: 71 GDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDNAAAMRYTEVRMAKL 130 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A +L ++++ VD+ Y+ + P V P+K PNLL NG+SGIAVGMAT+IP HN+ E+ Sbjct: 131 AHELLADLEKETVDWVPNYDGTEQIPAVMPTKIPNLLVNGSSGIAVGMATNIPPHNLGEV 190 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 + LAL+DNP++++++L++YI GPDFPT GII R I+E+YR GRG +RAR VE Sbjct: 191 IDGCLALMDNPDLTVDELMQYIPGPDFPTAGII-NGRAGIIEAYRTGRGRIYIRARAVVE 249 Query: 260 EV--GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317 E+ G G I++TE+PYQ+ K+RLIEKIAEL+ K+I + ++RDES +D V+ Sbjct: 250 EMEKGGGREQIIITELPYQLNKARLIEKIAELVKEKKIEGISELRDESDKDGMRVVIELR 309 Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377 R ++++ +++ + +++ F +N+ L G+ P+ + L +L+ ++ HRREV+ RR+ Sbjct: 310 RGEVGEVVLNNLYAQTQLQSVFGINVVALVDGQ-PRTLNLKDMLEVFVRHRREVVTRRTV 368 Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK----------------PVMVSR- 420 + ++ R IL+G +A NID +I +I++ P MV R Sbjct: 369 YELRKARERGHILEGQAVALSNIDPVIELIKSSPTPAEAKERLIATAWESSAVEAMVERA 428 Query: 421 --------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEK 460 + L+ Q AIL LRL L LE ++ SE +L + Sbjct: 429 GADACRPEDLDPQYGLRDGKYYLSPEQAQAILELRLHRLTGLEHEKLLSEYQEILNLIGE 488 Query: 461 IDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA-MIEKEP 519 + +L + + I E+ VK F + RRT A + L A +I +E Sbjct: 489 LIRILTNPARLMEVIREELEAVKAEFGDA-----RRTEIV----ASQVDLTIADLITEED 539 Query: 520 ITVVISNRGWIRS--LKSHSVDL------SALHFKEGDSLKIALHAHTTDRILLLSTDGK 571 V IS+ G+ +S L ++ SA K+ D ++ L A++ +LL S+ GK Sbjct: 540 RVVTISHGGYAKSQPLAAYQAQRRGGKGKSATGMKDEDYIEHLLVANSHATLLLFSSKGK 599 Query: 572 AYTL 575 Y L Sbjct: 600 VYWL 603 >gi|145636871|ref|ZP_01792536.1| DNA gyrase subunit A [Haemophilus influenzae PittHH] gi|145269952|gb|EDK09890.1| DNA gyrase subunit A [Haemophilus influenzae PittHH] Length = 880 Score = 400 bits (1028), Expect = e-109, Method: Compositional matrix adjust. Identities = 252/659 (38%), Positives = 378/659 (57%), Gaps = 64/659 (9%) Query: 13 VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72 ++ ++ V++ L+ YL YA+S I RA+PD+RDG KPVHRR++ +M G + Sbjct: 5 IQSSITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDREGNTANKKY 64 Query: 73 KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132 KSAR+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG+IDGD+ AA RYT Sbjct: 65 VKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRYT 124 Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192 E RM ++ + +L +D++ V+F Y+ E P V P++ P LLANG+SGIAVGMAT+IP Sbjct: 125 EVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPALLANGSSGIAVGMATNIP 184 Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252 HN+ E+ LA IDN EI+I++L+++I GPDFPT +I R+ I E+YR GRG V Sbjct: 185 PHNLNEVLNGCLAYIDNNEITIDELMQHIPGPDFPTAALI-NGRKGIEEAYRTGRGKVYV 243 Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRI 311 RAR VE +G I+V+E+PYQV K++L+EKIAELI K+I + +I D S E +RI Sbjct: 244 RARATVETNEKGREQIIVSELPYQVNKAKLVEKIAELIREKKIEGISNITDLSNKEGIRI 303 Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371 + K R ++++ ++ L+ M+ F +NM L G+ P++ L I++ ++ HRREV Sbjct: 304 EIDIK-RDAVGEVVLNHLYSLTQMQVTFGINMVALDHGQ-PRLFNLKEIIEAFVLHRREV 361 Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSR-------- 420 + RRS F ++ R IL+GL +A NIDE+IAIIRN ++ + SR Sbjct: 362 VTRRSIFELRKARERTHILEGLAVARSNIDEMIAIIRNSKNREEAATAISSRSWTLHSDI 421 Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457 + L+ QV+AIL LRL L + ++ E + LL + Sbjct: 422 INLLDVSARPDELEENLGIQGEQYYLSPAQVNAILELRLHRLTGIAFEEVIKEYEELLVK 481 Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517 + +L+S ++ I E+ EVK F G R T E++ A + +I + Sbjct: 482 IADLLHILSSAERLMEVIREELEEVKAQF------GDDRLT--EITAASGDIDLEDLIAQ 533 Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569 E + V +S+ G+++ + + SA KE D ++ L A+T D IL S+ Sbjct: 534 EDVVVTLSHEGYVKYQPLTDYEAQRRGGKGKSATKMKEEDFIEKLLVANTHDTILCFSSR 593 Query: 570 GKAYTLPAGNL-LSGRG-HGEAIQLLIDLNHNQDI-----VTAFVYDSTCKLLVVSSKG 621 G+ Y L L + RG G I ++ L N+ I V+A+ D K +V+++ G Sbjct: 594 GRLYWLKVYQLPQASRGARGRPIVNILPLQENERITAILPVSAYEED---KFVVMATAG 649 >gi|320535587|ref|ZP_08035684.1| DNA gyrase, A subunit [Treponema phagedenis F0421] gi|320147550|gb|EFW39069.1| DNA gyrase, A subunit [Treponema phagedenis F0421] Length = 838 Score = 400 bits (1028), Expect = e-109, Method: Compositional matrix adjust. Identities = 246/685 (35%), Positives = 395/685 (57%), Gaps = 51/685 (7%) Query: 30 YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89 Y+ Y++S I RA+PD+RDG KPVHRRI+++M E GL + +K A+IVG+V+G HPH Sbjct: 25 YIDYSMSVIVSRALPDVRDGLKPVHRRILYSMEEKGLRYSGPTRKCAKIVGDVLGSYHPH 84 Query: 90 GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDE 149 GD SVYD+LVRL Q F RYP+I QGNFG I GD AAAYRYTEA+M ++AE +++ + + Sbjct: 85 GDASVYDALVRLGQDFSLRYPVIHPQGNFGTIGGDPAAAYRYTEAKMAKIAESMVEDIKK 144 Query: 150 DAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDN 209 + VDF +++ EP V P+KFP LLANG+SGIAVGMAT++P HN++EI A A IDN Sbjct: 145 ETVDFISNFDDSTKEPTVLPAKFPFLLANGSSGIAVGMATNMPPHNLREIASAISAYIDN 204 Query: 210 PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIV 269 PEI+I++L ++I GPDFPTGG I ++ I ++Y+ GRG VR R+ +E +G I+ Sbjct: 205 PEITIDELCKHIKGPDFPTGGTIF-GKKGIRQAYKTGRGKILVRGRFTIEVDKKGKETII 263 Query: 270 VTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE--DVRIVLFPKNRSLDPDLLME 327 TE+PYQV + L+ +I EL K I + ++ DE+++ +RIV+ K R +++ Sbjct: 264 FTEVPYQVNTTNLVTRIGELARNKVIDGIANVNDETSDRTGLRIVIELK-RGAITKVVLN 322 Query: 328 SIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRV 387 +F + +++ F + L GR PQ + L +++ ++ HR EV+ RR+ F ++ + R Sbjct: 323 QLFAKTALQSSFGVINLALVEGR-PQTLTLKDLVRCFVNHRIEVVTRRTRFDLRKAEERA 381 Query: 388 EILKGLLIAYLNIDEIIAIIRNE-DKP--KPVMVSRFSLTENQVDAILNLRLRSLRKLEE 444 IL+ L++A NIDE+IAIIR+ D P K ++ RF E Q AI++++L+ L LE Sbjct: 382 HILRALIVAIDNIDEVIAIIRSSADTPTAKLNLMKRFGFDEVQSQAIVDMQLKRLTNLEI 441 Query: 445 YQIKSELD----------NLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494 ++ EL+ +LL EKI +L+ K + N+IA + G Sbjct: 442 KDLRKELEELEILIAHLKDLLEHPEKIRALV---KDETNEIADK-------------FGD 485 Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR-----SLKSHS---VDLSALHFK 546 R T ++ ++ +I+KE + ++ISN G+I+ + KS + ++ + Sbjct: 486 ERRTDIVADEVEELNIED-LIQKEEMVILISNLGYIKRIPVSAYKSQNRGGKGSNSANLA 544 Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVT 604 E D + A T D I+ ++ +GKAY L + S G I+ L+ ++ +++I T Sbjct: 545 EDDFIDQIFTASTHDYIMFITNEGKAYWLKVHEIPEASRTSRGSHIKSLLSVSGDEEI-T 603 Query: 605 AFV----YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-D 659 A V + + LL+ ++ G V +G +K+ +K+ + TG D Sbjct: 604 AVVSLKEFSDSTYLLMATAAGVVKKVTTDNFQNAKTRGIIAIKLDDGDKLVSAILTTGKD 663 Query: 660 HVAVVGENRKLLIFSIDQIPEMSRG 684 + ++ + + L + ++I + R Sbjct: 664 EIMLITRHAQALRMTEEEIRPLGRA 688 >gi|163856193|ref|YP_001630491.1| DNA gyrase subunit A [Bordetella petrii DSM 12804] gi|163259921|emb|CAP42222.1| DNA gyrase subunit A [Bordetella petrii] Length = 885 Score = 400 bits (1028), Expect = e-109, Method: Compositional matrix adjust. Identities = 264/739 (35%), Positives = 394/739 (53%), Gaps = 72/739 (9%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 VSL + YL YA+S I RA+PD+RDG KPVHRR+++AM E+ D+ A+KKSARIV Sbjct: 11 VSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNRAYKKSARIV 70 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGDQSVYD++VR+AQ F RY L+ GQGNFG+IDGDSAAA RYTE R+ ++ Sbjct: 71 GDVIGKYHPHGDQSVYDTIVRMAQDFSMRYMLVDGQGNFGSIDGDSAAAMRYTEVRLAKI 130 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A +L +D++ VDF Y+ + EP++ PS+ PNLL NG+SGIAVGMAT+IP HN+QE+ Sbjct: 131 AHELLADIDQETVDFGPNYDGSEQEPLLLPSRLPNLLVNGSSGIAVGMATNIPPHNLQEV 190 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 + L + NPE S+++L+E I PDFPTGGII + E YR GRG +RA+ E Sbjct: 191 VDGCLYCLRNPECSVDELIELIPAPDFPTGGIIY-GMSGVREGYRTGRGRVVMRAKTHFE 249 Query: 260 EVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318 ++ +G+ IVV IPYQV K L E+IAEL+ K+I + DIRDES +D ++ R Sbjct: 250 DMEKGNRQAIVVDAIPYQVNKKTLQERIAELVNEKKIEGISDIRDESDKDGMRLVIELKR 309 Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378 P++++ +++ + ++ F +N+ L G+ P+++ L ++ +L HRREV+ RR+ F Sbjct: 310 GEVPEVILNNLYKNTQLQDTFGMNLVALVDGQ-PRLLNLKQLIHYFLQHRREVVTRRTVF 368 Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV-----------------MVSR- 420 +++ R +L+GL +A NID+ IAII+ P PV M+SR Sbjct: 369 QLRKARERGHVLEGLAVALANIDDFIAIIKAAPTP-PVARQELMSRAWDSSLVREMLSRA 427 Query: 421 ---------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453 + L++ Q ILN+RL+ L LE+ +I E + Sbjct: 428 DLDAVGGPAAFRPDDLHESFGLQGDGLYRLSDTQAQEILNMRLQRLTGLEQDKIVGEYKD 487 Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513 ++A + +L ++ I E++ +K FS RR + D L Sbjct: 488 VMATIADLLDILAKPERITTIIGEELQAIKAEFSTGAKDTRRSEIEFNATELDTEDL--- 544 Query: 514 MIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565 I + V +S+ G+I RS K A KE D + A+T + +L Sbjct: 545 -ITPTDMVVTLSHAGYIKSQPLSEYRSQKRGGRGKQATAMKENDWIDQLFIANTHNYLLC 603 Query: 566 LSTDGKAYTLPAGNLLSG-RG-HGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSK 620 S G+ Y L + G RG G I + L + I + + + +S+ Sbjct: 604 FSDRGRVYWLKVWEVPQGTRGSRGRPIVNMFPLADGEKITVVLPVKEFSEDNYVFMATSR 663 Query: 621 GNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK--VTGDH-VAVVGENRKLLIFSIDQ 677 G S+ +N RK + V +E L+ G H V + + K + F + Sbjct: 664 GTVKKTPLSD-FSNPRKAG-IIAVGLDEGDYLIGADLTDGKHDVMLFSDAGKAVRFDEND 721 Query: 678 IPEMSR-GKGVRLQSYKDG 695 + M R +GVR + +DG Sbjct: 722 VRPMGRNARGVRGMTLEDG 740 >gi|306841825|ref|ZP_07474508.1| DNA gyrase, A subunit [Brucella sp. BO2] gi|306288106|gb|EFM59500.1| DNA gyrase, A subunit [Brucella sp. BO2] Length = 889 Score = 400 bits (1028), Expect = e-109, Method: Compositional matrix adjust. Identities = 247/655 (37%), Positives = 364/655 (55%), Gaps = 61/655 (9%) Query: 41 RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVR 100 RA+PD+RDG KPVHRRI+HAM+EM L + ++KSA +VGEV+GK HPHGD S+Y +LVR Sbjct: 3 RALPDVRDGLKPVHRRILHAMNEMNLAYNRPYRKSAGVVGEVMGKYHPHGDASIYGALVR 62 Query: 101 LAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNE 160 +AQ F R PLI GQGNFG+IDGD AA RYTE R+ +V E +L +D+D V+F+D Y+ Sbjct: 63 MAQDFSMRDPLIDGQGNFGSIDGDPPAAMRYTECRLEKVTESLLSDIDKDTVNFQDNYDG 122 Query: 161 EDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEY 220 + EPVV P++FPNLL NG+ GIAVGMAT+IP HN+ E+ + +ALIDNP I + +L+E Sbjct: 123 REQEPVVLPARFPNLLVNGSGGIAVGMATNIPPHNLGEVIDGCVALIDNPAIELSELMEL 182 Query: 221 IIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKS 280 I GPDFPTGGII+ R I +Y GRG +R R +E + I++TEIPYQV K+ Sbjct: 183 IPGPDFPTGGIIL-GRNGINSAYTTGRGSVIMRGRATIEPMRGDREAIIITEIPYQVNKA 241 Query: 281 RLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFP 340 +IEK+AEL+ KRI + D+RDES + V+ R D+++ ++ + ++T F Sbjct: 242 SMIEKMAELVRDKRIDGISDLRDESDREGYRVVVELKRDAVADVVLNQLYRYTPLQTSFG 301 Query: 341 LNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNI 400 NM L+ G+ Q+ LD +L+ ++A R EV+ RR+ F + R +L GL IA NI Sbjct: 302 CNMVALNGGKPEQLTLLD-MLRAFVAFREEVVTRRTKFLLNKARDRAHVLVGLAIAVANI 360 Query: 401 DEIIAIIRNEDKP----KPVMVSR-------------------------FSLTENQVDAI 431 DE+IA+IR P + +M R ++L+E Q AI Sbjct: 361 DEVIALIRRAPDPATAREQLMERRWPAVDVAPLIRLIDDPRHTLNEDNTYNLSEEQARAI 420 Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491 L+LRL+ L L ++ EL+ + E +L S + N + E+ V++ F+ Sbjct: 421 LDLRLQRLTALGRDEVADELNKIGEEIRDYLDILGSRLRVMNIVKEEMIAVRDEFATP-- 478 Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSAL 543 RRT E+ + +I +E + V +S+ G+I R+ + S + Sbjct: 479 ---RRT---EIGFGGAEMDDEDLIAREDMVVTVSHAGYIKRVPLTTYRAQRRGGKGRSGM 532 Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDLNH 598 KE D + A+T +L S+ G K + LP G S G+A+ ++ L Sbjct: 533 ATKEEDFVTRLFVANTHTPVLFFSSRGIVYKEKVWRLPVGTPQS---RGKALINMLPLQQ 589 Query: 599 NQDIVTAFVY----DSTCKLLVV--SSKGNAFIVEESEIIANTRKGKTFLKVSSE 647 + I T DS L V+ +++G + S+ + R GK +K+ E Sbjct: 590 GERITTIMPLPEDEDSWANLDVMFSTTRGTVRRNKLSDFVQVNRNGKIAMKLEDE 644 >gi|160872886|ref|ZP_02063018.1| DNA gyrase, A subunit [Rickettsiella grylli] gi|159121685|gb|EDP47023.1| DNA gyrase, A subunit [Rickettsiella grylli] Length = 859 Score = 400 bits (1028), Expect = e-109, Method: Compositional matrix adjust. Identities = 278/793 (35%), Positives = 431/793 (54%), Gaps = 74/793 (9%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + ++++ L++ YLAYA+S I RA+PD RDG KPVHRR++ AM+E+G D+ KKSA Sbjct: 9 ITSITVEKELKQSYLAYAMSVIVGRALPDSRDGLKPVHRRVLFAMNELGNDWNKPHKKSA 68 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD ++YD++VR+AQ F R LI GQGNFG++DGDSAA+ RYTE RM Sbjct: 69 RVVGDVIGKYHPHGDAAIYDTIVRMAQRFSMRAVLIDGQGNFGSVDGDSAASMRYTEIRM 128 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 +++A +L + ++ VDF Y+E + P V P++ PNLL NG+SGIAVGMAT+IP HN+ Sbjct: 129 SKLAHALLADLAKETVDFVPNYDETEHIPSVLPTRVPNLLVNGSSGIAVGMATNIPPHNL 188 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ +A +AL+++ E+SIE+L+ +I GPDFPT G+I ++ I+E+Y GRG VRAR Sbjct: 189 AEVIDACVALLNDSELSIERLMHFIKGPDFPTAGLIY-GKQGIIEAYHTGRGRLFVRARV 247 Query: 257 CVEEVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315 +E+ + + I+VTE+PYQV K++LIEKIAEL+ KRI + +RDES +D V+ Sbjct: 248 QIEQDEKSNKQRIIVTELPYQVNKAKLIEKIAELVKEKRIEGITALRDESDKDGMRVVIE 307 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 R + D+L+ ++F + ++ F +NM L GR P ++ L ++ E+LAHRREV+ RR Sbjct: 308 VKRGENVDVLLNNLFSQTQLQVTFGINMVALVDGR-PVLLNLKQLISEFLAHRREVVTRR 366 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV----------------MVS 419 + F ++ R +L+GL IA NID +I +I+ P M++ Sbjct: 367 TIFELRKARERAHLLEGLGIALANIDLMIGLIKAAKDPAEAKSQLLAQDWSLGLVAEMLT 426 Query: 420 R-----------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKID 462 + + L+ Q AIL+LRL L LE+ +I E L + Sbjct: 427 KTDDWAEHEYGVKKDSNTYRLSPEQAQAILDLRLHRLTGLEQEKILKEYREQLTIIIDLL 486 Query: 463 SLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITV 522 +LN ++ I E+ +KE F L RRT E+ D ++ +I E + V Sbjct: 487 DILNQPERLCRVIQEELIAIKEEF-----LDPRRT---EIITVDAEINEEDLIPAEDVVV 538 Query: 523 VISNRGWIRSLKSHSVDL-----------SALHFKEGDSLKIALHAHTTDRILLLSTDGK 571 +S+ G++ K S+D+ S+ KE D ++ L A+T +L S+ GK Sbjct: 539 TLSHEGYV---KRQSLDVYHAQRRGGRGKSSGDVKEEDFIEHLLIANTHATLLCFSSIGK 595 Query: 572 AYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIV 626 Y L L G G I L+ L N+ I Y + + + + KG Sbjct: 596 VYWLKVYKLPEGSRIAKGRPIINLLALGENERITAVLPIQNYSAEHFIFMATMKGTT--- 652 Query: 627 EESEIIANTR---KGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMS 682 +++ +I +R G + + +++ V G V + + K++ F+ + M Sbjct: 653 KKTSLIDFSRPRHDGIIAIDLRDHDRLVGVALTDGQQDVLLFTDAGKVIRFNESNVRCMG 712 Query: 683 RGK-GVRLQSYKDGGISDVICFKICEGLTWIDSAGR-SYNRSENDLLGWLGKRGGVGSLV 740 R GVR ++G VI I + I +A R Y + L RGG G + Sbjct: 713 RTACGVRGIKLQEG--QRVISLIIAKPYGLILTATRHGYGKCTPVHDHRLTSRGGSGVIA 770 Query: 741 PKGFPRSGKFLSS 753 K R+G+ +++ Sbjct: 771 IKTTARNGQVVAA 783 >gi|107102698|ref|ZP_01366616.1| hypothetical protein PaerPA_01003764 [Pseudomonas aeruginosa PACS2] gi|116051157|ref|YP_790012.1| DNA gyrase subunit A [Pseudomonas aeruginosa UCBPP-PA14] gi|296388348|ref|ZP_06877823.1| DNA gyrase subunit A [Pseudomonas aeruginosa PAb1] gi|115586378|gb|ABJ12393.1| DNA gyrase subunit A [Pseudomonas aeruginosa UCBPP-PA14] Length = 921 Score = 400 bits (1028), Expect = e-109, Method: Compositional matrix adjust. Identities = 236/604 (39%), Positives = 357/604 (59%), Gaps = 59/604 (9%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 V++ L++ YL YA+S I RA+PD RDG KPVHRR+++AMSE+G D+ +KKSAR+V Sbjct: 11 VNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMSELGNDWNKPYKKSARVV 70 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG++DGD+AAA RYTE RM ++ Sbjct: 71 GDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDNAAAMRYTEVRMAKL 130 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A +L ++++ VD+ Y+ + P V P+K PNLL NG+SGIAVGMAT+IP HN+ E+ Sbjct: 131 AHELLADLEKETVDWVPNYDGTEQIPAVMPTKIPNLLVNGSSGIAVGMATNIPPHNLGEV 190 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 + LAL+DNP++++++L++YI GPDFPT GII R I+E+YR GRG +RAR VE Sbjct: 191 IDGCLALMDNPDLTVDELMQYIPGPDFPTAGII-NGRAGIIEAYRTGRGRIYIRARAVVE 249 Query: 260 EV--GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317 E+ G G I++TE+PYQ+ K+RLIEKIAEL+ K+I + ++RDES +D V+ Sbjct: 250 EMEKGGGREQIIITELPYQLNKARLIEKIAELVKEKKIEGISELRDESDKDGMRVVIELR 309 Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377 R ++++ +++ + +++ F +N+ L G+ P+ + L +L+ ++ HRREV+ RR+ Sbjct: 310 RGEVGEVVLNNLYAQTQLQSVFGINVVALVDGQ-PRTLNLKDMLEVFVRHRREVVTRRTV 368 Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK----------------PVMVSR- 420 + ++ R IL+G +A NID +I +I++ P MV R Sbjct: 369 YELRKARERGHILEGQAVALSNIDPVIELIKSSPTPAEAKERLIATAWESSAVEAMVERA 428 Query: 421 --------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEK 460 + L+ Q AIL LRL L LE ++ SE +L + Sbjct: 429 GADACRPEDLDPQYGLRDGKYYLSPEQAQAILELRLHRLTGLEHEKLLSEYQEILNLIGE 488 Query: 461 IDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA-MIEKEP 519 + +L + + I E+ VK F + RRT A + L A +I +E Sbjct: 489 LIRILTNPARLMEVIREELEAVKAEFGDA-----RRTEIV----ASQVDLTIADLITEED 539 Query: 520 ITVVISNRGWIRS--LKSHSVDL------SALHFKEGDSLKIALHAHTTDRILLLSTDGK 571 V IS+ G+ +S L ++ SA K+ D ++ L A++ +LL S+ GK Sbjct: 540 RVVTISHGGYAKSQPLAAYQAQRRGGKGKSATGMKDEDYIEHLLVANSHATLLLFSSKGK 599 Query: 572 AYTL 575 Y L Sbjct: 600 VYWL 603 >gi|313126395|ref|YP_004036665.1| DNA gyrase subunit a [Halogeometricum borinquense DSM 11551] gi|312292760|gb|ADQ67220.1| DNA gyrase subunit A [Halogeometricum borinquense DSM 11551] Length = 861 Score = 400 bits (1028), Expect = e-109, Method: Compositional matrix adjust. Identities = 259/711 (36%), Positives = 411/711 (57%), Gaps = 60/711 (8%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 V+ + +E+ Y+ YA+S I RA+PD+RDG KPVHRRI++AM+E G+ ++ +KS+ Sbjct: 19 VQNARIEQEMEQSYIDYAMSVIAGRALPDVRDGLKPVHRRILYAMNEAGVSARSSHRKSS 78 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 IVGE +G HPHGD ++YD+L R+AQ F RYPL+ GQGNFG++DGD AA RYTEARM Sbjct: 79 SIVGETMGDYHPHGDSAIYDALARMAQDFSMRYPLVDGQGNFGSVDGDPPAAMRYTEARM 138 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 +AE +L+ +D+D VDF+ Y++ EPVV PS FPNLL NG+SGIAVGM+T+IP HN+ Sbjct: 139 APIAEELLEDIDKDTVDFQSNYDDRKQEPVVLPSSFPNLLVNGSSGIAVGMSTNIPPHNL 198 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ +A LI+NP+ ++E L+EY+ GPDFPTG IV + ++ ++Y+ GRG RVRA + Sbjct: 199 GEVIDATTHLIENPDCTVEDLMEYVKGPDFPTGANIV-GKNAVHKAYKTGRGRIRVRAEF 257 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFP 315 V+E G IV+TE+PYQ K+RLIE+IA+ + +I + D+RDES D +R+V+ Sbjct: 258 EVDEDGDN---IVITELPYQENKARLIERIADDVNDGKIEGIRDLRDESDRDGIRVVVEL 314 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 K R +PD++ + + +E+ F + +N+ + P+V+ L LKE+L HRREV+ RR Sbjct: 315 K-RGANPDVVKNQL-LEHHLESTFGV-INLALVDGQPRVLTLKETLKEYLDHRREVVRRR 371 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVM------------VSR 420 S + + + R IL+G L A NID+++ IRN D K + + Sbjct: 372 SEYELGEAEDRAHILEGRLKALENIDDVVETIRNSESRDDAKAALRGEMTVEVDGEPLPT 431 Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480 F +E+Q + I+ ++L SL +E +IK E + + ++++ +LN+ + I E+ Sbjct: 432 FDFSEDQANHIVAMQLGSLTSMEAAEIKDEYEEVQDRIDRLNEILNNPDELDAVIKSELT 491 Query: 481 EVKEIFSKSTDLGRRRTTFCEVSRADKATL-QQAMIEKEPITVVISNRGWIRSLKSHSVD 539 +K+ + RRT+F E D T+ + +I +E + VV++ +I+ + + Sbjct: 492 AIKDEYDD-----ERRTSFIE----DTGTVTHEDLIAEEDVVVVVTEDDYIKRMPLDT-- 540 Query: 540 LSALH----------FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHG 587 A H KEGD + A T D +L + G+ Y L + +S G Sbjct: 541 FRAQHRGGKGIIGTDLKEGDRVSSVFVASTHDYLLYFTNHGQVYKLKTYQIPEMSRTARG 600 Query: 588 EAIQLLIDLNHNQDIV----TAFVYDSTCKLLVVSSKGNAFI----VEESEIIANTRKGK 639 ++ L++L+ ++I TA + D T K L ++++ N ++ VE+ + I T G Sbjct: 601 KSAVNLLELDDGEEITAVVNTADIEDETDKYLTMATQ-NGYVKRTSVEKFQNILTT--GI 657 Query: 640 TFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSR-GKGVR 688 K+ ++++ V G H V+ + I F + M R +GVR Sbjct: 658 IATKLDEDDELADVEVTDGSHDLVLASRDGMAIRFDESDVRAMGRSARGVR 708 >gi|153803745|ref|ZP_01958331.1| DNA gyrase/topoisomerase IV, A subunit [Vibrio cholerae MZO-3] gi|124120719|gb|EAY39462.1| DNA gyrase/topoisomerase IV, A subunit [Vibrio cholerae MZO-3] Length = 456 Score = 400 bits (1028), Expect = e-109, Method: Compositional matrix adjust. Identities = 208/467 (44%), Positives = 309/467 (66%), Gaps = 14/467 (2%) Query: 61 MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120 MSE+GL A +KKSAR VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G Sbjct: 1 MSELGLSASAKYKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGA 60 Query: 121 IDG-DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANG 179 D S AA RYTEA++++ AE++L + + VD++ ++ EP + P++ P++L NG Sbjct: 61 PDDPKSFAAMRYTEAKLSKFAEILLSELGQGTVDWQPNFDGTMQEPKMLPARLPHILLNG 120 Query: 180 TSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESI 239 +GIAVGMAT IP HNV+E+ +A + LIDNP + L++Y+ GPDFPT I+ + Sbjct: 121 VTGIAVGMATDIPPHNVREVADATIHLIDNPNAPLTDLMQYVKGPDFPTEAEIITPTVEL 180 Query: 240 VESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299 + YR GRG ++RA WC E GS IV+T +P+QV ++L+E+IA + AK++P++E Sbjct: 181 EKIYRSGRGSIKMRAVWCKE----GS-DIVITALPHQVSGAKLLEQIAAQMRAKKLPMVE 235 Query: 300 DIRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPL 357 D+RDES + RIV+ P++ +D DLLM +F +D+E F +N+N++ + PQV L Sbjct: 236 DLRDESDHENPTRIVIVPRSNRVDCDLLMNHLFASTDLEKSFRVNLNMIGLDNRPQVKGL 295 Query: 358 DGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM 417 IL EW++ RRE + R +R+ + R+ IL+GLLIAYLN+DE+I IIRNED PK V+ Sbjct: 296 VQILSEWISFRRETVRSRLQYRLDKVLARLHILQGLLIAYLNLDEVIEIIRNEDDPKAVL 355 Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477 ++RF LT+ Q DAIL+ +LR L KLEE +I+ E D L E++K++ LL S ++ N + Sbjct: 356 MARFDLTDIQADAILDTKLRHLAKLEEMKIRGEQDELEKERKKLEELLGSERRLNNLLKK 415 Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVI 524 EI+ + F RR+ E A KA ++ ++ E ITVV+ Sbjct: 416 EIKADADKFGDD-----RRSPLVEREEA-KALTERDLMPSEAITVVL 456 >gi|255320340|ref|ZP_05361524.1| DNA gyrase, A subunit [Acinetobacter radioresistens SK82] gi|262379375|ref|ZP_06072531.1| DNA gyrase, A subunit [Acinetobacter radioresistens SH164] gi|255302535|gb|EET81768.1| DNA gyrase, A subunit [Acinetobacter radioresistens SK82] gi|262298832|gb|EEY86745.1| DNA gyrase, A subunit [Acinetobacter radioresistens SH164] Length = 985 Score = 400 bits (1027), Expect = e-109, Method: Compositional matrix adjust. Identities = 231/612 (37%), Positives = 354/612 (57%), Gaps = 65/612 (10%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 ++ +++ L+ YL YA+S I RA+PD+RDG KPVHRR+++AM E+G D+ A+KKSA Sbjct: 6 IRPIAIEDELKHSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMHELGNDYNKAYKKSA 65 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD +VY+++VR+AQ F RY L+ GQGNFG++DGDSAAA RYTE RM Sbjct: 66 RVVGDVIGKYHPHGDSAVYETIVRMAQDFSLRYQLVDGQGNFGSVDGDSAAAMRYTEVRM 125 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 ++ IL +++D VD+ D Y+ + P V P++ PNLL NG +GIAVGMAT++ HN+ Sbjct: 126 RKLTHEILADLEKDTVDWEDNYDGSERIPQVMPTRIPNLLINGAAGIAVGMATNMAPHNM 185 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ A LA DN IS+E L+EYI GPDFPTGGII + IV++YR G+G +R ++ Sbjct: 186 TEVVNACLAYADNTNISVEGLMEYISGPDFPTGGIIY-GKSGIVDAYRTGKGRLHIRGKY 244 Query: 257 CVEEVGR-GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315 EE + G IV TEIPYQV K+R+IE+IAEL+ K++ + ++RDES +D + Sbjct: 245 HFEEDEKTGRTTIVFTEIPYQVNKARVIERIAELVKEKKLEGISELRDESDKDGMRIAID 304 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 R + ++++ ++F+ + +E F +NM L G+ P++M L I+ ++ HR+EV+ RR Sbjct: 305 LKRGENAEVVVNNLFLNTQLENSFSINMVCLDNGQ-PKLMNLKDIIAAFIRHRQEVVTRR 363 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN-------------------------- 409 + + ++ R IL+GL +A NID+II I+ Sbjct: 364 TMYELRKARERGHILEGLTVALANIDDIIDAIKTSANPAEARERLLAADWAAGGVGAMLE 423 Query: 410 --------------EDKPKPVMVSR--FSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453 ED +P + R + L+ QV AIL LRL L LE+ ++ +E Sbjct: 424 RAGSVSIRPDEIEGEDPSRPFGLDRDIYRLSPTQVAAILELRLNRLTGLEQDKLHAEYSE 483 Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513 +L + ++ ++LN +N + I+E E+ G R T SR D + ++ Sbjct: 484 ILGQITELTAILND----FNLLMAVIKE--ELVLVLQQYGDARRTEIVESRIDFS--RED 535 Query: 514 MIEKEPITVVISNRGWIRS--LKSHSVDL------SALHFKEGDSLK--IALHAHTTDRI 563 +I +E + + +S G+ ++ L ++ SA KE D ++ I H T + Sbjct: 536 LIPEEQVVLTVSQSGYAKTQPLSDYAAQRRGGRGKSATSMKEDDFIQHLIVTSNHAT--V 593 Query: 564 LLLSTDGKAYTL 575 L + GK Y L Sbjct: 594 LCFTNVGKVYRL 605 >gi|254515159|ref|ZP_05127220.1| DNA gyrase, A subunit [gamma proteobacterium NOR5-3] gi|219677402|gb|EED33767.1| DNA gyrase, A subunit [gamma proteobacterium NOR5-3] Length = 871 Score = 400 bits (1027), Expect = e-109, Method: Compositional matrix adjust. Identities = 272/794 (34%), Positives = 423/794 (53%), Gaps = 94/794 (11%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + V++ L++ YL YA+S I RA+PD+RDG KPVHRR++ AM+E+ D+ +KKSA Sbjct: 8 ISPVTIEDELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELNNDWNKPYKKSA 67 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG++DGDSAAA RYTE RM Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSMRYTLVDGQGNFGSVDGDSAAAMRYTEIRM 127 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 +++A +L +D+D VD+ D Y+ + PVV P++ PNLL NG++GIAVGMAT+IP HN+ Sbjct: 128 SKIAHALLADLDKDTVDYVDNYDGTEQIPVVLPTRVPNLLVNGSAGIAVGMATNIPPHNL 187 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 +E+ A LALI++ +I+I+ L+ Y+ GPDFPTG II R IV++YR GRG VRA+ Sbjct: 188 REVVNACLALINDSDITIDDLMRYLPGPDFPTGAII-NGRAGIVQAYRTGRGRIYVRAKA 246 Query: 257 CV---EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313 V E+ GR + I++ EIPYQ+ K+RLIE+IAEL+ K++ + ++RDES +D V+ Sbjct: 247 EVITDEKTGRDT--IIIHEIPYQLNKARLIERIAELVKEKKLEGISELRDESDKDGLRVV 304 Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373 + D+++ +++ + ++ F +NM L G+ P+V+ L IL+ +L HRREV+ Sbjct: 305 IELRKGEIGDVVLNNLYAQTSLQNVFGINMVALVDGQ-PRVLNLKEILEAFLRHRREVVT 363 Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV----------------M 417 RR+ + ++ R +L+GL IA NID +I +++ P M Sbjct: 364 RRTLYLLRKARERGHVLEGLAIALANIDRVIELVKASPSPADARESLLAQSWMPGEVTSM 423 Query: 418 VSR---------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLA 456 + R + L+ Q AIL+LRL L LE ++ E + L Sbjct: 424 LERAGAEACRPDELEPFYGLHDGEYRLSPTQAQAILDLRLHRLTGLEHEKLLKEYQDKLI 483 Query: 457 EKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE 516 E + +L ++ I E+ E+ F RRT E+ + + + +I Sbjct: 484 EIADLMDILQDPERLLAVIREELEEITAEFGDE-----RRT---EIRDSQEDLTAEDLIT 535 Query: 517 KEPITVVISNRGWIRS--LKSHSVDL------SALHFKEGDSLKIALHAHTTDRILLLST 568 E V +S+ G+ ++ L + V +AL K+ D ++ L A+T D +L S Sbjct: 536 PEDRVVTLSHGGYAKTQPLAEYQVQRRGGMGKAALSVKDEDFVEHLLIANTHDTLLCFSN 595 Query: 569 DGKAYTLPAGNL-LSGRG-HGEAIQLLIDLNHNQDIVTAF-VYDSTCKLLVVSSKGNAFI 625 GK Y + + ++GR G + L+ L+ + + + + + T + + N ++ Sbjct: 596 FGKVYWIKVYQIPVAGRASRGRPMVNLLQLDEGERVTSILPLEEHTDDRFIFMATANGYV 655 Query: 626 VEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGE-----NRKLLIFSIDQIPE 680 KT L + L V GD +VG ++ +++FS + Sbjct: 656 ------------KKTDLASFAPRSAGLRAIVLGDDDVLVGTAITDGSQDVMLFSSEGKAT 703 Query: 681 MSRGKGVRLQSYKDGGISDVICFKICEGLTWI-----DSAGRSYNRSENDLLGWLGKRGG 735 VR G+ + + EG I D+ G SEN G+ GKR Sbjct: 704 RFSESAVRPMGRASRGVRGI---NLAEGHRMISLLVPDATGTVLTVSEN---GY-GKRTA 756 Query: 736 VGSLVPKGFPRSGK 749 V KG R GK Sbjct: 757 VDDFPTKG--RGGK 768 >gi|33519927|ref|NP_878759.1| DNA gyrase subunit A [Candidatus Blochmannia floridanus] gi|33504273|emb|CAD83165.1| DNA gyrase subunit A [Candidatus Blochmannia floridanus] Length = 862 Score = 400 bits (1027), Expect = e-109, Method: Compositional matrix adjust. Identities = 250/669 (37%), Positives = 377/669 (56%), Gaps = 73/669 (10%) Query: 10 NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69 N L +E + + + L+ YL YA+S I RA+PD+RDG KPVHRRI+ AM +G + Sbjct: 2 NDLAKE-ITPIYIEEELKRSYLDYAMSVIVGRALPDVRDGLKPVHRRILFAMQVLGNCWN 60 Query: 70 AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129 ++KKSARIVG+VIGK HPHGD +VY+++VR+AQPF+ RY LI GQGNFG++DGD AAA Sbjct: 61 RSYKKSARIVGDVIGKYHPHGDVAVYEAIVRMAQPFLMRYALIDGQGNFGSVDGDPAAAM 120 Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189 RYTE RM+++A +L ++++ VD+ Y+ + P + P++ PNLL NG+SGIAVGMAT Sbjct: 121 RYTEVRMSKIANELLFDLEKETVDYELNYDGTEQIPEILPTRIPNLLINGSSGIAVGMAT 180 Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249 +IP HN+ E+ LA IDN +I+I+ L++YI GPDFP+ II + R + E+Y GRG Sbjct: 181 NIPPHNLTEVINGCLAFIDNEDITIDSLMKYIPGPDFPSAAIINDYR-GLKEAYETGRGK 239 Query: 250 FRVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308 +RAR +E ++ G IV+ EIPYQ+ KSRL+EKIAEL+ KRI + ++RDES +D Sbjct: 240 IYIRARSEIETDIKTGRESIVIYEIPYQINKSRLLEKIAELVKTKRIEGIYNLRDESDKD 299 Query: 309 -VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367 +RIV+ K+ ++ ++++ +++ L+ ++ F +NM L G+ P+ M L IL ++ H Sbjct: 300 GMRIVIDIKHDAIS-EIVLNNLYSLTSLQISFGINMVALHNGQ-PKTMSLKDILSAFVCH 357 Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK--------------- 412 RR ++ RR F ++ RV +L+GL++A NID +IA+I+ + Sbjct: 358 RRSIITRRIMFELKKASNRVHVLEGLIVALSNIDIVIALIQQTESITQANAELTSKLWES 417 Query: 413 ------PKPVMV----------------SRFSLTENQVDAILNLRLRSLRKLEEYQIKSE 450 K + V S + T+NQ AIL LRL L LE ++ E Sbjct: 418 NNIINMRKKISVDLLHSGWLDASNIKKDSGYYFTKNQAQAILELRLHKLTHLEYEKLVIE 477 Query: 451 LDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCE--VSRADKA 508 +N+L + E + +L + I E+ +KE ++ RRT E VS D Sbjct: 478 YENVLKKMENLICVLQNPSSLMGLIRQELVSIKEEYNDP-----RRTEISENIVSNIDLE 532 Query: 509 TLQQAMIEKEPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTT 560 L I + + V +S +G+++ + K KE D + L A+T Sbjct: 533 NL----INQRDVVVTLSYQGYVKYQPLTDYEAQKRGGKGKLTTRIKEEDFITQLLIANTH 588 Query: 561 DRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTC 612 D +LL S G K Y LP N S G I L+ L+ N+ I Y + Sbjct: 589 DTVLLFSNYGRIYWMKVYRLPKANKGS---RGRPIINLLPLDTNERITVILPVQNYTTGH 645 Query: 613 KLLVVSSKG 621 ++ + +S G Sbjct: 646 QVFMATSSG 654 >gi|327398179|ref|YP_004339048.1| DNA gyrase subunit A [Hippea maritima DSM 10411] gi|327180808|gb|AEA32989.1| DNA gyrase, A subunit [Hippea maritima DSM 10411] Length = 812 Score = 400 bits (1027), Expect = e-109, Method: Compositional matrix adjust. Identities = 245/692 (35%), Positives = 397/692 (57%), Gaps = 29/692 (4%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 ++N+ V ++ +++ YL Y++S I RAIPD RDG KPVHRRI++AM E+ L+ +K Sbjct: 7 DKNIFPVDIKDTMQQSYLDYSMSVIVGRAIPDARDGLKPVHRRILYAMKELNLEHNKPYK 66 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSAR+VG+VIGK HPHGD +VYD+LVR++Q F RYPLI GQGNFG++DGDS AA RYTE Sbjct: 67 KSARVVGDVIGKYHPHGDMAVYDALVRMSQDFSMRYPLIDGQGNFGSLDGDSPAAMRYTE 126 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 R++++AE +L+ +D+++VDF Y++ EP V P+ PNLL NGT GIAVG AT IP Sbjct: 127 VRLSKIAEEMLKDLDKNSVDFVPNYDDSLKEPSVLPTFIPNLLMNGTDGIAVGFATKIPP 186 Query: 194 HNVQEICEAALALID-NPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252 +N+ EI +A LA +D + EIS +++L YI GPDFPTGGI + + SI E+Y+ G G + Sbjct: 187 NNLAEIIDACLAYLDKDGEISTDEILNYIKGPDFPTGGICFDIK-SIKEAYKKGIGKITL 245 Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRI 311 RA+ E++ + +VV EIPYQV K+ L++ IA+L+ K++ + D+RDES E VRI Sbjct: 246 RAKVKEEKI-KNRQALVVYEIPYQVNKALLLQSIAQLVKDKKVEGIADLRDESNKEGVRI 304 Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371 V+ K + P +++ +F ++++T F +NM L +G P+++ + + ++ HR +V Sbjct: 305 VIEIK-KDEQPKVILNKLFKYTNLQTTFGVNMMAL-VGNTPRLLNIKDAIGVFVEHRIDV 362 Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQV 428 + RR+SF + R IL+GLLI NIDE++AII++ + + RF L++ Q Sbjct: 363 VKRRTSFLLSKAKDRAHILEGLLITLDNIDEVVAIIKSSQSTQEARSRLKERFKLSDRQT 422 Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488 AIL+++L L LE+ ++ E + +L + E +S+L I E+ VK+ ++ Sbjct: 423 QAILDMKLARLVALEKQKLIDEYNQVLKDIEYYESILKDRSVLKGVIKDELVYVKQTYAD 482 Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--LKSHSVDLS----- 541 R+T + S D + +I+ E + + S +G++++ L +S Sbjct: 483 -----ERKTQILD-SIVDIGI--EDVIKDEQLIITFSKKGYVKAVPLDVYSTQHRGGKGR 534 Query: 542 -ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNH 598 A F + D + ++ + +L + G+ Y++ A N+ S G I +++L Sbjct: 535 MAATFSDNDYITDIFLTNSLNTLLCFTNLGRVYSVKAYNIPKQSPSAKGRPIVNILNLQP 594 Query: 599 NQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT- 657 + + T L ++ G GK ++++ ++ + V V Sbjct: 595 QEFVKTIVPISEADSLFFATAAGTVKRSSFRHFENIPSNGKIAIRLNEQDSLVSVFSVAE 654 Query: 658 GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVR 688 GD V + + F D + +M R GVR Sbjct: 655 GDEVIITTRRGMCVRFDSDSVRDMGRAAAGVR 686 >gi|300023686|ref|YP_003756297.1| DNA gyrase subunit alpha [Hyphomicrobium denitrificans ATCC 51888] gi|299525507|gb|ADJ23976.1| DNA gyrase, A subunit [Hyphomicrobium denitrificans ATCC 51888] Length = 915 Score = 400 bits (1027), Expect = e-109, Method: Compositional matrix adjust. Identities = 262/742 (35%), Positives = 405/742 (54%), Gaps = 63/742 (8%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 +++ VS+ +++ YL YA+S I RA+PD+RDG KPVHRRI+ AM+E+GLD+ + KS Sbjct: 17 DIRPVSISDEMKKSYLDYAMSVIISRALPDVRDGLKPVHRRILFAMNELGLDWNKKYVKS 76 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 ARIVGEV+GK HPHG+ ++YD+LVRLAQ F R PL+ GQGNFG+IDGD AA RYTE+R Sbjct: 77 ARIVGEVMGKYHPHGNLAIYDALVRLAQDFSMRVPLVDGQGNFGSIDGDPPAAERYTESR 136 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 + +VA +L +D D VD+RD Y+ EP V P+KFPNLL NG GIAVGMAT+IP HN Sbjct: 137 LAKVASFLLDDLDNDTVDYRDNYDGTIQEPSVLPAKFPNLLVNGAGGIAVGMATNIPPHN 196 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 + E+ +A +A +DNPEI I++L + I GPDFPT G+I+ R I+ +Y GRG +RAR Sbjct: 197 LGEVIDACIADLDNPEIGIDELSQIIQGPDFPTAGLIL-GRGGILSAYHKGRGSIIMRAR 255 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLF 314 VE + + +VV+EIPYQV K LIEKIA+L+ K+I + D+ DES E +RIV+ Sbjct: 256 VTVEHIRKDREALVVSEIPYQVNKRTLIEKIADLVRDKKIEGISDLWDESNREGIRIVIE 315 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K R D+++ +++ SD++T F NM ++ GR P+ + L + + + R++V+ R Sbjct: 316 LK-RDAVADVVLNNLYKYSDLQTTFGANMLAINGGR-PESLTLKDFISAFTSFRQDVVTR 373 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----------- 420 R + R +L GL IA NIDE+I +IR P K +++R Sbjct: 374 RIKHLLNKARDRAHVLVGLAIAVANIDEVIKLIRFSASPAEAKEQLMARDWPAKDMVPLI 433 Query: 421 ---------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLL 465 + L+E Q AIL LRL L L +I EL+ + E + ++L Sbjct: 434 ELIADPRHKVSATGTYRLSEEQAKAILELRLARLTALGRDEIADELNKIANEIREYLAIL 493 Query: 466 NSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVIS 525 S + + + E++ +K+ F+ R+T ++ + + +I++E V +S Sbjct: 494 ASRARVVDIVKGELQTIKDEFATP-----RKTEIVDI---EGEVEDEDLIQREDCVVTVS 545 Query: 526 NRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPA 577 ++G+I R+ + S + ++ D + T +L S+ G Y + Sbjct: 546 HKGYIKRVPLATYRAQRRGGKGRSGMSTRDEDFVTQLFVTSTHTPVLFFSSRGMCYRMKV 605 Query: 578 GNL--LSGRGHGEAIQLLIDLNHNQDIVT--AFVYDSTC----KLLVVSSKGNAFIVEES 629 L S + G+A+ L+ L ++ I + DS+ +L+ + GN + Sbjct: 606 WRLPPASPQSPGKALVNLLPLAQDEVITSILPLPEDSSTWSELELIFATRSGNVRRNALA 665 Query: 630 EIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSRGK--- 685 + + R GK +K+ + + V D V + N + + F I + +G+ Sbjct: 666 DFESINRNGKIAMKLDEGDSIVQVAIAKPDQDVLLTSGNGQCVRFLISDEIRLFKGRDST 725 Query: 686 GVRLQSYKDGGISDVICFKICE 707 GVR DG +VI I + Sbjct: 726 GVRGIRLGDG--DEVISMAILD 745 >gi|319776149|ref|YP_004138637.1| DNA gyrase subunit A [Haemophilus influenzae F3047] gi|317450740|emb|CBY86960.1| DNA gyrase (type II topoisomerase), subunit A [Haemophilus influenzae F3047] Length = 880 Score = 400 bits (1027), Expect = e-109, Method: Compositional matrix adjust. Identities = 250/659 (37%), Positives = 378/659 (57%), Gaps = 64/659 (9%) Query: 13 VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72 ++ ++ V++ L+ YL YA+S I RA+PD+RDG KPVHRR++ +M G + Sbjct: 5 IQSSITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDREGNTANKKY 64 Query: 73 KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132 KSAR+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG+IDGD+ AA RYT Sbjct: 65 VKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRYT 124 Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192 E RM ++ + +L +D++ ++F Y+ E P V P++ P LLANG+SGIAVGMAT+IP Sbjct: 125 EVRMQKITQALLTDLDKETINFSPNYDGELMIPDVLPTRIPALLANGSSGIAVGMATNIP 184 Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252 HN+ E+ LA IDN EI+I++L+++I GPDFPT +I R+ I E+YR GRG V Sbjct: 185 PHNLNEVLNGCLAYIDNNEITIDELMQHIPGPDFPTAALI-NGRKGIEEAYRTGRGKVYV 243 Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRI 311 RAR VE +G I+V+E+PYQV K++L+EKIAELI K+I + +I D S E +RI Sbjct: 244 RARATVETNEKGREQIIVSELPYQVNKAKLVEKIAELIREKKIEGISNITDLSNKEGIRI 303 Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371 + K R ++++ ++ L+ M+ F +NM L G+ P++ L I++ ++ HRREV Sbjct: 304 EIDIK-RDAVGEVVLNHLYSLTQMQVTFGINMVALDHGQ-PRLFNLKEIIESFVLHRREV 361 Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---------------------- 409 + RRS F ++ R IL+GL +A NIDE+IAIIRN Sbjct: 362 VTRRSIFELRKARERTHILEGLAVARSNIDEMIAIIRNSKNREEAATAISSRSWTLHSDI 421 Query: 410 ----EDKPKP--------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457 + +P + ++ L+ QV+AIL LRL L + ++ E + LL + Sbjct: 422 INLLDASARPDELEENLGIQGEQYYLSPAQVNAILELRLHRLTGIAFEEVIKEYEELLVK 481 Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517 + +L+S ++ I E+ EVK F G R T E++ A + +I + Sbjct: 482 IADLLHILSSAERLMEVIREELEEVKAQF------GDDRLT--EITAASGDIDLEDLIAQ 533 Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569 E + V +S+ G+++ + + SA KE D ++ L A+T D IL S+ Sbjct: 534 EDVVVTLSHEGYVKYQPLTDYEAQRRGGKGKSATKMKEEDFIEKLLVANTHDTILCFSSR 593 Query: 570 GKAYTLPAGNL-LSGRG-HGEAIQLLIDLNHNQDI-----VTAFVYDSTCKLLVVSSKG 621 G+ Y L L + RG G I ++ L N+ I V+A+ D K +V+++ G Sbjct: 594 GRLYWLKVYQLPQASRGARGRPIVNILPLQENERITAILPVSAYEED---KFVVMATAG 649 >gi|188584270|ref|YP_001927715.1| DNA gyrase, A subunit [Methylobacterium populi BJ001] gi|179347768|gb|ACB83180.1| DNA gyrase, A subunit [Methylobacterium populi BJ001] Length = 908 Score = 400 bits (1027), Expect = e-109, Method: Compositional matrix adjust. Identities = 256/702 (36%), Positives = 381/702 (54%), Gaps = 81/702 (11%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 ++K VS+ + YL YA+S I RA+PD RDG KPVHRRI+++ E G + KS Sbjct: 18 DIKPVSITDEMRRSYLDYAMSVIVSRALPDARDGLKPVHRRILYSAFESGHLPERKYVKS 77 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 ARIVG+VIG+ HPHGDQS+YD+LVR+AQ F R LI GQGNFG++DGD AA RYTE+R Sbjct: 78 ARIVGDVIGQYHPHGDQSIYDALVRMAQDFSMRLMLIDGQGNFGSVDGDPPAAMRYTESR 137 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 + + A +L +D++ VDF+ Y++ EP V P++FPNLL NG GIAVGMAT+IP HN Sbjct: 138 LARPAISLLTDIDKNTVDFQSNYDDSREEPTVLPARFPNLLVNGAGGIAVGMATNIPPHN 197 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 + E+ +A +ALID+P ++IE L E + GPDFPTGG+I+ R ++Y GRG +RAR Sbjct: 198 LGELVDACVALIDDPALTIEALNEIVPGPDFPTGGMIL-GRAGTRQAYTTGRGSIIMRAR 256 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314 VEE+ + ++ TEIPYQV K+ LIEKIAEL+ KRI + D+RDES D +RIV+ Sbjct: 257 SHVEELRKEREALIFTEIPYQVNKATLIEKIAELVKDKRIEGISDLRDESDRDGMRIVVE 316 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K ++ D+++ ++ + ++T F NM L+ GR P++M L +L + R EV+ R Sbjct: 317 IKRDAM-ADVVLNQLYRYTPLQTSFGANMVALNGGR-PELMNLKDLLLAFNDFREEVVSR 374 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----------- 420 R+ F + R +L GL IA NIDE+I +IR P + +++R Sbjct: 375 RTKFLLNKARERAHVLCGLAIAVANIDEVIRLIRTSPDPNTAREALMARDWPAHDIAPLI 434 Query: 421 ---------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLL 465 + L+E Q AIL+LRL+ L L +I EL L E +L Sbjct: 435 ALVDDPRHRVADDGTYRLSETQARAILDLRLQRLTALGRDEIGDELKKLADEIADYLDIL 494 Query: 466 NSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVIS 525 S + + E+ EV+E+F+ R+T E+ +D + + +I +E + V +S Sbjct: 495 RSRARIQAIVKHELAEVRELFATP-----RKT---EIIDSDFSVEDEDLIAREDMVVTVS 546 Query: 526 NRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT--- 574 + G++ RS K S + ++ D + A+T +L S G+AY Sbjct: 547 HAGYVKRVPLSTYRSQKRGGKGRSGMSTRDEDFVTRLFVANTHTPVLFFSDQGQAYKEKV 606 Query: 575 --LPAG----------NLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGN 622 LP N+L + GE I ++ L ++ T ++ ++ GN Sbjct: 607 WRLPVAAPNARGKALVNILHLQNEGERITTIMPLPEDE------ASWETLDVMFATASGN 660 Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVV 664 + S+ + R GK +K+ GDH+ V Sbjct: 661 VRRNKLSDFVQVNRNGKIAMKLDP-----------GDHIVHV 691 >gi|312865217|ref|ZP_07725445.1| DNA gyrase, A subunit [Streptococcus downei F0415] gi|311099328|gb|EFQ57544.1| DNA gyrase, A subunit [Streptococcus downei F0415] Length = 829 Score = 400 bits (1027), Expect = e-109, Method: Compositional matrix adjust. Identities = 230/614 (37%), Positives = 366/614 (59%), Gaps = 38/614 (6%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 + N+ V+L ++ ++ YA+S I RA+PD+RDG KPVHRRI++ M+E+G+ K Sbjct: 3 DRNLVNVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHK 62 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSARI G+V+GK HPHGD S+Y+++VR+AQ + R+ L+ G GNFG++DGD AAA RYTE Sbjct: 63 KSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTE 122 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 ARM+++A +L+ ++++ VDF+D Y+ + EP+V PS+FPNLL NG +GIAVGMAT+IP Sbjct: 123 ARMSKIALDMLRDINKNTVDFQDNYDGSEKEPLVLPSRFPNLLVNGATGIAVGMATNIPP 182 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E +A ++D PE + ++++E + GPDFPTG +++ + I +Y G+G +R Sbjct: 183 HNLGEAIDAVKLVMDKPEATTKEIMEVMPGPDFPTGALVM-GKSGIHRAYETGKGSIVLR 241 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312 +R +E G IVVTE PY V K+++ E I L KR+ + +RDES+ E VR + Sbjct: 242 SRTEIETTKSGRERIVVTEFPYGVNKTKVHEHIVRLAQEKRVEGITAVRDESSREGVRFI 301 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 + + R ++++ ++F L+ ++T F NM + G VP+++ L I+ ++ H++EV+ Sbjct: 302 IEVR-RDASANVILNNLFKLTSLQTNFSFNMLAIEKG-VPKILSLRQIIDNYIEHQKEVI 359 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVD 429 RR+ F + + R IL+GLLIA ++DE+IAIIR + + + ++SRF L+E Q Sbjct: 360 VRRTRFDKEKAEARAHILEGLLIALDHLDEVIAIIRGSQTDAEAQAQLMSRFDLSERQSQ 419 Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489 AIL++RLR L LE +I++E ++LLA + +L ++ I E+ E+K K Sbjct: 420 AILDMRLRRLTGLERDKIQNEYNDLLALIADLADILAKPERVVTIIKDEMDEIKR---KY 476 Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLS 541 D R EV + + +IE+E + + +SN+G+I RS K + Sbjct: 477 ADPRRTELMVGEVL----SLEDEDLIEEENVLITLSNKGYIKRLAQDEFRSQKRGGRGVQ 532 Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLLSGRGH 586 + D ++ + T D +L + G+ Y LP NLL Sbjct: 533 GTGVNDDDFVRDLVSTSTHDVVLFFTNQGRVYRLKGYEIPEYGRTAKGLPVVNLLK-LTD 591 Query: 587 GEAIQLLIDLNHNQ 600 GE IQ +I LN N+ Sbjct: 592 GETIQTIISLNQNE 605 >gi|82703307|ref|YP_412873.1| DNA gyrase subunit A [Nitrosospira multiformis ATCC 25196] gi|82411372|gb|ABB75481.1| DNA gyrase subunit A [Nitrosospira multiformis ATCC 25196] Length = 893 Score = 400 bits (1027), Expect = e-109, Method: Compositional matrix adjust. Identities = 278/804 (34%), Positives = 424/804 (52%), Gaps = 92/804 (11%) Query: 21 SLRFALEER----YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 +L+ +LEE YL YA+S I RA+PD+RDG KPVHRR++ AM E+ D+ +KKSA Sbjct: 40 TLQISLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELSNDWNRPYKKSA 99 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD +VYD++VR+AQ F RY L+ GQGNFG++DGD+ AA RYTE RM Sbjct: 100 RVVGDVIGKYHPHGDTAVYDTIVRMAQNFSLRYMLVDGQGNFGSVDGDNPAAMRYTEIRM 159 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 +++A +L +D++ VDF Y+ + EP++ P+K PNLL NG+SGIAVGMAT+IP HN+ Sbjct: 160 SRIAHEMLADLDKETVDFGPNYDGTEKEPLILPTKIPNLLINGSSGIAVGMATNIPPHNL 219 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ +A LAL+ NPEI+IE L+E I GPDFPT +I + E YR GRG +RAR Sbjct: 220 NEVTDACLALLKNPEIAIEDLIELIPGPDFPTAALIY-GVTGVKEGYRTGRGRVIMRART 278 Query: 257 CVE--EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314 E E G G IV+ E+PYQV K+ L+ +I EL+ K+I + D+RDES + V+ Sbjct: 279 HFEDMEKGGGRQSIVIDELPYQVNKANLLIRIGELVRDKKIEGISDLRDESDKSGMRVVI 338 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 R+ P++++ +++ + M+ F +NM L G+ P+++ L +L+ +L HRREV+ R Sbjct: 339 ELRRNEVPEVVLNNLYKETQMQDTFGMNMVALLDGQ-PRLLNLKQMLEAFLRHRREVVTR 397 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----------- 420 RS F ++ R +L+GL +A N+DE+IA+I+ P K ++SR Sbjct: 398 RSVFELKKARERGHVLEGLAVALSNVDEVIALIKAAQTPAAAKEALMSRVWRSRLVEQML 457 Query: 421 -------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLL 455 + L++ Q AIL LRL+ L LE+ +I SE +++ Sbjct: 458 ARAAVDAKQFRPEGLAPEYGLFDDGYHLSDGQAQAILELRLQRLTGLEQDKIVSEYRDVM 517 Query: 456 AEKEKIDSLLN--SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513 E+I LL+ + ++ I E E+ + G +R + ++ D + + Sbjct: 518 ---ERIADLLDILARPERITAIITE-----ELVAMKQQFGDKRRSEIVINTQDLS--MED 567 Query: 514 MIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565 +I E + V +S+ G+I R+ K A K+ D + A+T D IL Sbjct: 568 LIASEDVVVTLSHNGYIKSQPLDDYRAQKRGGRGKQATGTKDDDFIDNLFIANTHDYILC 627 Query: 566 LSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF---VYDSTCKLLVV 617 S+ G K Y++P G S G I L+ L + + I +D + + Sbjct: 628 FSSRGRVYWIKVYSVPQGGRAS---RGRPIVNLMQLEYGEKINAVLPIKTFDDNRYVFMA 684 Query: 618 SSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSID 676 +S G SE G + + ++ + V G H V + + K + F + Sbjct: 685 TSLGTVKKTPLSEFSRPRASGIIAVGLDEDDFLIGVALTEGKHDVMLFSDGGKAVRFDEN 744 Query: 677 QIPEMSRG-KGVRLQSYKDGGISDVICFKICEG-----LTWIDSA-GRSYNRSENDLLGW 729 + M RG +GVR + G VI + E LT ++ G+ SE G Sbjct: 745 DVRPMGRGARGVRGMTLGKG--QKVISLLVAESEEQAVLTATENGYGKRTPISEYTRHG- 801 Query: 730 LGKRGGVGSLVPKGFPRSGKFLSS 753 RG G + K R+GK + + Sbjct: 802 ---RGSQGMIAIKTTQRNGKVVGA 822 >gi|161609265|ref|NP_890006.2| DNA gyrase subunit A [Bordetella bronchiseptica RB50] gi|161610385|ref|NP_885309.2| DNA gyrase subunit A [Bordetella parapertussis 12822] Length = 893 Score = 400 bits (1027), Expect = e-109, Method: Compositional matrix adjust. Identities = 237/610 (38%), Positives = 348/610 (57%), Gaps = 61/610 (10%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 VSL + YL YA+S I RA+PD+RDG KPVHRR+++AM E+ D+ A+KKSARIV Sbjct: 11 VSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNRAYKKSARIV 70 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGDQSVYD++VR+AQ F RY L+ GQGNFG+IDGD+AAA RYTE R+ ++ Sbjct: 71 GDVIGKYHPHGDQSVYDTIVRMAQDFSMRYMLVDGQGNFGSIDGDNAAAMRYTEIRLAKI 130 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A +L +D++ VDF Y+ + EP++ PS+ PNLL NG+SGIAVGMAT+IP HN+QE+ Sbjct: 131 AHELLADIDQETVDFGPNYDGSEQEPLLLPSRLPNLLVNGSSGIAVGMATNIPPHNLQEV 190 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 + L + NPE SI++L+E I PDFPTGG+I + E YR GRG +RA+ E Sbjct: 191 VDGCLYCLRNPECSIDELIELIPAPDFPTGGVIY-GITGVREGYRTGRGRVIMRAKTHFE 249 Query: 260 EVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318 ++ +G+ IVV IPYQV K L E+IAEL+ K+I + DIRDES +D ++ R Sbjct: 250 DMEKGNRQAIVVDAIPYQVNKKTLQERIAELVNDKKIEGISDIRDESDKDGMRLVIELKR 309 Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378 P++++ +++ + ++ F +N+ L G+ P+++ L +++ +L HRREV+ RR+ F Sbjct: 310 GEVPEVVLNNLYKNTQLQDTFGMNLVALVDGQ-PRLLNLKQLIEYFLQHRREVVTRRTVF 368 Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV-----------------MVSR- 420 +++ R +L+GL +A NID+ IAII+ P PV M++R Sbjct: 369 QLRKARERGHVLEGLAVALANIDDFIAIIKAAPTP-PVARQELMARSWDSSLVREMLARV 427 Query: 421 ---------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453 + L+E Q ILN+RL+ L LE+ +I E + Sbjct: 428 DGDAAGGVAAFRPDDLAPEYGLQGDGNYRLSETQAQEILNMRLQRLTGLEQDKIIGEYKD 487 Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513 ++A + +L ++ I+ E++ +K FS S RR + D L Sbjct: 488 VMATIADLLDILARPERITTIISEELQAIKAEFSTSAKDTRRAEIEVNATELDTEDLITP 547 Query: 514 MIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565 M + V +S+ G+I RS K A KE D + A+T D +L Sbjct: 548 M----DMVVTLSHGGYIKSQPLSEYRSQKRGGRGKQATAMKENDWVDQLFIANTHDYLLC 603 Query: 566 LSTDGKAYTL 575 S G+ Y L Sbjct: 604 FSNRGRVYWL 613 >gi|118475139|ref|YP_892598.1| DNA gyrase subunit A [Campylobacter fetus subsp. fetus 82-40] gi|1346230|sp|P47235|GYRA_CAMFE RecName: Full=DNA gyrase subunit A gi|818859|gb|AAA67068.1| DNA gyrase A subunit [Campylobacter fetus] gi|118414365|gb|ABK82785.1| DNA gyrase, A subunit [Campylobacter fetus subsp. fetus 82-40] Length = 862 Score = 400 bits (1027), Expect = e-109, Method: Compositional matrix adjust. Identities = 241/620 (38%), Positives = 377/620 (60%), Gaps = 44/620 (7%) Query: 4 DNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63 +NI +SN +++ A+ + +++ YL Y++S I RA+PD RDG KPVHRRI++AM++ Sbjct: 3 ENIFSSN----QDIDAIDVEDSIKASYLDYSMSVIIGRALPDARDGLKPVHRRILYAMND 58 Query: 64 MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123 +G+ + +KKSARIVG+VIGK HPHGD +VYD+LVR+AQ F R P + GQGNFG++DG Sbjct: 59 LGVGSRSPYKKSARIVGDVIGKYHPHGDTAVYDALVRMAQNFSMRVPAVDGQGNFGSVDG 118 Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183 D AAA RYTEARMT +AE +L+ +D+D VDF Y++ SEP V P++ PNLL NG+SGI Sbjct: 119 DGAAAMRYTEARMTVLAEELLRDLDKDTVDFIPNYDDSLSEPDVLPARVPNLLLNGSSGI 178 Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243 AVGMAT+IP H++ E+ L L+D+ E+ +E ++ +I GPDFPTGGII ++ I+E+Y Sbjct: 179 AVGMATNIPPHSLDELVNGLLTLLDDKEVGLEDIMTHIKGPDFPTGGIIF-GKKGIIEAY 237 Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303 + GRG ++RA+ +E+ IVV E+PYQV K++L IA+L+ K I + ++RD Sbjct: 238 KTGRGRIKLRAKTHIEK-KPNKDVIVVDELPYQVNKAKLHADIADLVKEKLIDGISEVRD 296 Query: 304 ESAED-VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362 ES D +R+V+ K ++ ++++ ++F + ME F + M ++ + P+V L +LK Sbjct: 297 ESDRDGIRLVIELKRDAM-SEIVLNNLFKSTQMEVTFGVIMLAIN-NKEPKVFSLLELLK 354 Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVS 419 +L HR+ V+ RR+ F +Q R IL+GL IA NID +I +I+ + + + +++ Sbjct: 355 LFLNHRKTVIIRRTIFELQKARARAHILEGLKIALDNIDAVINLIKTSADTNSARDGLMA 414 Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479 +F L+E Q +AIL++RL L LE ++++EL +L EK+D++L S N I E+ Sbjct: 415 KFGLSELQSNAILDMRLSKLTGLEREKLEAELKEILELIEKLDAILKSETLIENIIRDEL 474 Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539 E+K F + ++ + +I E + V I++RG+I+ + S S + Sbjct: 475 LEIKSKF--------KCPRITDIVDDYDDIDVEDLIPNENMVVTITHRGYIKRVPSKSYE 526 Query: 540 LSALHFKEGDSLKIALHAHTTDRI-----------LLLSTDG------KAYTLPAGNLLS 582 K G K+A+ + D I L+ TD K Y +P G S Sbjct: 527 KQ----KRGGKGKVAVTTYDDDFIESFFTCMSHDTLMFVTDRGQLYWLKVYKIPEG---S 579 Query: 583 GRGHGEAIQLLIDLNHNQDI 602 G+A+ LI L ++ I Sbjct: 580 RTAKGKAVVNLISLQADEKI 599 >gi|327542615|gb|EGF29088.1| DNA gyrase subunit A [Rhodopirellula baltica WH47] Length = 825 Score = 400 bits (1027), Expect = e-109, Method: Compositional matrix adjust. Identities = 252/727 (34%), Positives = 393/727 (54%), Gaps = 59/727 (8%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 ++ + LRFA ++RYL Y+LS I RA+PD+RDG KPV RRI++ MS+ LD A +K A Sbjct: 31 IQNIPLRFAAQDRYLNYSLSVITSRALPDVRDGLKPVQRRILYTMSQQRLDATAKHRKCA 90 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 ++VG+V+G HPHGD S+Y++LVR++Q F R P+I G GNFG+IDGD+AAA RYTE RM Sbjct: 91 KVVGDVMGNYHPHGDSSIYEALVRMSQSFSLRMPMIDGSGNFGSIDGDNAAAMRYTECRM 150 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 T +A +L + V F+ Y+ EPVV PS+ P+LL NG +GIAVGMAT+IP HN+ Sbjct: 151 TPIASEVLADLSSRTVAFKPNYDGTREEPVVLPSRVPSLLVNGATGIAVGMATNIPPHNL 210 Query: 197 QEICEAALALIDNPEISIEKLL--EYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 +E+C A L L+ NPEI +L+ + I GPDFPTGG I ++E + E Y G G ++R Sbjct: 211 KEVCNALLKLLANPEIKDYQLVAGDAIQGPDFPTGGHITNTKEELREIYATGTGTIKLRG 270 Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314 V E R + +TEIP+ V K+ ++E+IAEL+ + ++PL++++RD S ED+R+ L Sbjct: 271 VAEVAEKSRTGDTLRITEIPFGVNKAAMVERIAELVYSSKLPLVQEVRDLSTEDIRVDLL 330 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQV-----MPLDGILKEWLAHRR 369 K ++ D D ++ ++ + ++T F +N+ L+ P+V + L IL +L R Sbjct: 331 LK-KNADADKVLAYLYKHTPLQTNFNVNLTCLTPTENPEVGAPKRLGLKEILWYFLHFRL 389 Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE----DKPKPVMVSRFSLTE 425 +VL R + ++A+++R+ IL+GL + + +DEII IIR+ D + +M RF + E Sbjct: 390 DVLTARLTNELRALEKRIHILEGLALIFDALDEIIKIIRSSEGKADAAEKIM-KRFPVKE 448 Query: 426 ------------------NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467 Q DAIL L+L L +LE + EL ++I+ LL Sbjct: 449 LTPAQARRKTRASNGLDAEQTDAILELKLYRLARLEINVVLDELKKKRKRVDEINKLLAD 508 Query: 468 GKQ------QWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPIT 521 + +W I E++ + + +T GRRR+T V + ++ I E Sbjct: 509 DRDDYTSSGRWAIIKEELQSLISDYG-NTPAGRRRSTIV-VPTEEVEYTEEDFIVAEDCH 566 Query: 522 VVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL 581 V+++ GW++ K D S ++GD++ + +T + S+ G YT ++ Sbjct: 567 VMVTVDGWVKRQK-QIADPSKSRLRQGDAVLACVAGNTRTTLAFFSSLGVCYTARMIDIP 625 Query: 582 SGRGHGEAIQLLIDLNHNQDIVTAFVYD----------------STCKLLVVSSKGNAFI 625 + G GE IQ L + I+ A D L S+ G A Sbjct: 626 ASTGFGEPIQKLFKFKDGERIIAALSMDPRILGDISEDPKGNYYPATHALAASTDGYALR 685 Query: 626 VEESEII-ANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMS- 682 +TR G+ F +V + VV + G + V V + + ++ D+I +S Sbjct: 686 FGLQPFAEPSTRAGRKFARVKPGASIVDVVPIAGTETVLAVSADARAMVCPADEINYLSG 745 Query: 683 RGKGVRL 689 GKGV L Sbjct: 746 AGKGVLL 752 >gi|32472531|ref|NP_865525.1| DNA gyrase subunit A [Rhodopirellula baltica SH 1] gi|32443767|emb|CAD73209.1| DNA gyrase subunit A [Rhodopirellula baltica SH 1] Length = 825 Score = 400 bits (1027), Expect = e-109, Method: Compositional matrix adjust. Identities = 252/727 (34%), Positives = 393/727 (54%), Gaps = 59/727 (8%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 ++ + LRFA ++RYL Y+LS I RA+PD+RDG KPV RR+++ MS + LD A K A Sbjct: 31 IQNIPLRFAAQDRYLNYSLSVITSRALPDVRDGLKPVQRRVLYTMSLLRLDSSAKHSKCA 90 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 ++VG+V+GK HPHGD S+Y++LVR++Q F R P+I G GNFG+IDGD+AAA RYTE RM Sbjct: 91 KVVGDVMGKYHPHGDSSIYEALVRMSQSFSLRMPMIDGSGNFGSIDGDNAAAMRYTECRM 150 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 T +A +L + V F+ Y+ EPVV PS+ P+LL NG +GIAVGMAT+IP HN+ Sbjct: 151 TPIASEVLADLSSRTVAFKPNYDGTREEPVVLPSRVPSLLVNGATGIAVGMATNIPPHNL 210 Query: 197 QEICEAALALIDNPEISIEKLL--EYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 +E+C A L L+ NPEI +L+ + I GPDFPTGG I ++E + E Y G G ++R Sbjct: 211 KEVCNALLKLLANPEIKDYQLVAGDAIQGPDFPTGGHITNTKEELREIYATGTGTIKLRG 270 Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314 V E R + +TEIP+ V K+ ++E+IAEL+ + ++PL++++RD S ED+R+ L Sbjct: 271 VAEVAEKSRTGDTLRITEIPFGVNKAAMVERIAELVYSSKLPLVQEVRDLSTEDIRVDLL 330 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQV-----MPLDGILKEWLAHRR 369 K ++ D D ++ ++ + ++T F +N+ L+ P+V + L IL +L R Sbjct: 331 LK-KNADADKVLAYLYKHTPLQTNFNVNLTCLTPTENPEVGAPKRLGLKEILWYFLHFRL 389 Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE----DKPKPVMVSRFSLTE 425 +VL R + ++A+++R+ IL+GL + + +DEII IIR+ D + +M RF + E Sbjct: 390 DVLTARLTNELRALEKRIHILEGLALIFDALDEIIKIIRSSEGKADAAEKIM-KRFPVKE 448 Query: 426 ------------------NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467 Q DAIL L+L L +LE + EL ++I+ LL Sbjct: 449 LTPAQARRKTRASNGLDAEQTDAILELKLYRLARLEINVVLDELKKKRKRVDEINKLLAD 508 Query: 468 GKQ------QWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPIT 521 + +W I E++ + + +T GRRR+T V + ++ I E Sbjct: 509 DRDDYTSSGRWAIIKEELQSLISDYG-NTPAGRRRSTIV-VPTEEVEYTEEDFIVAEDCH 566 Query: 522 VVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL 581 V+++ GW++ K D S ++GD++ + +T + S+ G YT ++ Sbjct: 567 VMVTVDGWVKRQK-QIADPSKSRLRQGDAVLACVAGNTRTTLAFFSSLGVCYTARMIDIP 625 Query: 582 SGRGHGEAIQLLIDLNHNQDIVTAFVYD----------------STCKLLVVSSKGNAFI 625 + G GE IQ L + I+ A D L S+ G A Sbjct: 626 ASTGFGEPIQKLFKFKDGERIIAALSMDPRILGDISEDPKGNYYPATHALAASTDGYALR 685 Query: 626 VEESEII-ANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMS- 682 +TR G+ F +V + VV + G + V V + + ++ D+I +S Sbjct: 686 FGLQPFAEPSTRAGRKFARVKPGASIVDVVPIAGTETVLAVSADARAMVCPADEINYLSG 745 Query: 683 RGKGVRL 689 GKGV L Sbjct: 746 AGKGVLL 752 >gi|167755160|ref|ZP_02427287.1| hypothetical protein CLORAM_00665 [Clostridium ramosum DSM 1402] gi|237733417|ref|ZP_04563898.1| DNA gyrase subunit A gyrA [Mollicutes bacterium D7] gi|167705210|gb|EDS19789.1| hypothetical protein CLORAM_00665 [Clostridium ramosum DSM 1402] gi|229383452|gb|EEO33543.1| DNA gyrase subunit A gyrA [Coprobacillus sp. D7] Length = 819 Score = 400 bits (1027), Expect = e-109, Method: Compositional matrix adjust. Identities = 259/772 (33%), Positives = 424/772 (54%), Gaps = 56/772 (7%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 E ++ V L ++ ++ YA+S I RA+PD+RDG KPV RRII+ MS++G G +K Sbjct: 3 ERGIRKVKLTSEMKNSFMQYAMSVIVSRALPDVRDGLKPVQRRIIYGMSDLGCTPGTPYK 62 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSARIVGEV+GK HPHGD S+Y++LVR+AQ F RY L+ G GNFG+IDGD AAA RYTE Sbjct: 63 KSARIVGEVMGKYHPHGDSSIYEALVRMAQDFSYRYMLVDGHGNFGSIDGDGAAAQRYTE 122 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 ARM++++ +++ + ED +DF Y+ E+ EP V P++ PNLL NG++GIAVGMAT+IP Sbjct: 123 ARMSKISSELVRDLKEDTIDFIPNYDGEEQEPAVLPARIPNLLINGSTGIAVGMATNIPP 182 Query: 194 HNVQEICEAALALIDNPEISIEKLLE-YIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252 HN+ E+ EA LA+ +P+I+I +L+E YI GPDFPTGG I+ + +I ++Y G G + Sbjct: 183 HNLVEVIEAILAVAKDPDITIMELMENYIQGPDFPTGGYIL-GKTAIKKAYETGNGLIVM 241 Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312 RA+ +EE G IVVTEIPY V K+R+IEK+++L+ K+I + +IRDES D V Sbjct: 242 RAKTEIEEKG-SKKVIVVTEIPYMVNKARMIEKMSQLVREKKIEGITEIRDESNRDGIRV 300 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 + R + P++++ ++ L+ ++T F N L + P+ + L ++ +L H+ EV+ Sbjct: 301 VIELRRDIQPEVILNQLYKLTSLQTTFGANCIAL-VNNEPKTLNLKEMITLYLDHQEEVI 359 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVD 429 RR+ FR+ + R IL+GL A ID II +IR+ + + ++ F++++ Q Sbjct: 360 KRRTKFRLTKAEDRAHILEGLKRALDQIDAIIDLIRSSRTTEIIQTRLMEEFNMSDKQAK 419 Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489 AI ++L+ L LE +I+ +L+ LL + +L + ++ + I E+ E+K+ + Sbjct: 420 AIREMQLQRLAGLERQKIEDDLNKLLEIIADLKDILENRERLLSIIHDELEEIKDKYGD- 478 Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD--------LS 541 +RRT E+ + + +I E + + ++N G+++ + + + Sbjct: 479 ----KRRT---EIIQGTFDLEDEDLIPVEDVIISLTNNGYVKRMPVDTYKTQNRGGRGIK 531 Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL----LSGRG----------HG 587 + D + ++ T D +L + GK Y L N+ S +G Sbjct: 532 GMATNSDDIVSSLINMSTHDDLLFFTNFGKVYRLKGYNIPEFGRSAKGLPVVNLLNLDKE 591 Query: 588 EAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE 647 E ++ +I +N Q ++ L V++ G V +E + GK + + + Sbjct: 592 EQVKSMISINRKQ-----IEENNDYYLFFVTASGLVKRVHINEFERIRQSGKIAISLRDD 646 Query: 648 EKMKLVVKVTG--DHVAVVGENRKLLIFSIDQIPEMSRG----KGVRLQSYKDGGISDVI 701 +++ + VK+TG D + + N KL+ F + M R KG+ + DG S+VI Sbjct: 647 DQL-VSVKLTGGNDQILIAASNGKLVRFEETNVRPMGRSASGVKGINV----DG--SEVI 699 Query: 702 CFKI-CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752 EG + R Y + L RGG G R+G+ ++ Sbjct: 700 GMTTDKEGKYIMVVTERGYGKMSPLEEYRLSNRGGKGVKTINATERNGQIVA 751 >gi|145634404|ref|ZP_01790114.1| DNA gyrase subunit A [Haemophilus influenzae PittAA] gi|145268384|gb|EDK08378.1| DNA gyrase subunit A [Haemophilus influenzae PittAA] Length = 882 Score = 399 bits (1026), Expect = e-109, Method: Compositional matrix adjust. Identities = 252/659 (38%), Positives = 377/659 (57%), Gaps = 64/659 (9%) Query: 13 VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72 ++ ++ V++ L+ YL YA+S I RA+PD+RDG KPVHRR++ +M G + Sbjct: 5 IQSSITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDREGNTANKKY 64 Query: 73 KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132 KSAR+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG+IDGD+ AA RYT Sbjct: 65 VKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRYT 124 Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192 E RM ++ + +L +D+ V+F Y+ E P V P++ P LLANG+SGIAVGMAT+IP Sbjct: 125 EVRMQKITQALLTDLDKKTVNFSPNYDGELMIPDVLPTRIPALLANGSSGIAVGMATNIP 184 Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252 HN+ E+ LA IDN EI+I++L+++I GPDFPT +I R+ I E+YR GRG V Sbjct: 185 PHNLNEVLNGCLAYIDNNEITIDELMQHIPGPDFPTAALI-NGRKGIEEAYRTGRGKVYV 243 Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRI 311 RAR VE +G I+V+E+PYQV K++L+EKIAELI K+I + +I D S E +RI Sbjct: 244 RARATVETNEKGREQIIVSELPYQVNKAKLVEKIAELIREKKIEGISNITDLSNKEGIRI 303 Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371 + K R ++++ ++ L+ M+ F +NM L G+ P++ L I++ ++ HRREV Sbjct: 304 EIDIK-RDAVGEVVLNHLYSLTQMQVTFGINMVALDHGQ-PRLFNLKEIIEAFVLHRREV 361 Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSR-------- 420 + RRS F ++ R IL+GL +A NIDE+IAIIRN ++ + SR Sbjct: 362 VTRRSIFELRKARERTHILEGLAVARSNIDEMIAIIRNSKNREEAATAISSRSWTLHSDI 421 Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457 + L+ QV+AIL LRL L + ++ E + LL + Sbjct: 422 INLLDVSARPDELEENLGIQGEQYYLSPAQVNAILELRLHRLTGIAFEEVIKEYEELLVK 481 Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517 + +L+S ++ I E+ EVK F G R T E++ A + +I + Sbjct: 482 IADLLHILSSAERLMEVIREELEEVKAQF------GDDRLT--EITAASGDIDLEDLIAQ 533 Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569 E + V +S+ G+++ + + SA KE D ++ L A+T D IL S+ Sbjct: 534 EDVVVTLSHEGYVKYQPLTDYEAQRRGGKGKSATKMKEEDFIEKLLVANTHDTILCFSSR 593 Query: 570 GKAYTLPAGNL-LSGRG-HGEAIQLLIDLNHNQDI-----VTAFVYDSTCKLLVVSSKG 621 G+ Y L L + RG G I ++ L N+ I V+A+ D K +V+++ G Sbjct: 594 GRLYWLKVYQLPQASRGARGRPIVNILPLQENERITAILPVSAYEED---KFVVMATAG 649 >gi|303240047|ref|ZP_07326568.1| DNA gyrase, A subunit [Acetivibrio cellulolyticus CD2] gi|302592316|gb|EFL62043.1| DNA gyrase, A subunit [Acetivibrio cellulolyticus CD2] Length = 845 Score = 399 bits (1026), Expect = e-109, Method: Compositional matrix adjust. Identities = 235/657 (35%), Positives = 384/657 (58%), Gaps = 38/657 (5%) Query: 6 ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65 +++ N + ++++ V + ++ ++ YA+S I +RA+PD+RDG KPVHRRI++ M +G Sbjct: 1 MADINDVKDQSIIPVDIEAEMKNSFINYAMSVIVDRALPDVRDGLKPVHRRILYGMFGLG 60 Query: 66 LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125 A +K A VGEV+GK HPHGD +VYDS+VR+AQ F RY L+ G GNFG++DGD Sbjct: 61 FTPDKAHRKCATTVGEVLGKYHPHGDAAVYDSMVRMAQDFSLRYRLVDGHGNFGSVDGDP 120 Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185 AA RYTEAR+ +++ +++ +++D VDF+ ++E + EPVV PS+FPNLL NG+SGIAV Sbjct: 121 PAAMRYTEARLAKISMEMIRDINKDTVDFKPNFDEHEIEPVVLPSRFPNLLVNGSSGIAV 180 Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245 GMAT+IP N+ E+ + + +I+ P+ +I++L + I GPDFPT GIIV + I ++YR Sbjct: 181 GMATNIPPQNLSEVIDGIVKVIEEPQTTIDELNKIIKGPDFPTAGIIV-GKSGIRDAYRT 239 Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305 GRG +RA +E++ IVVTE+PYQV K+RL+EKIA+L+ KRI + D+RDES Sbjct: 240 GRGRIIMRAVTNIEQMSPNKQRIVVTELPYQVNKARLVEKIADLVKEKRIENISDLRDES 299 Query: 306 AED-VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGR----VPQVMPLDGI 360 +RIV+ K R + ++++ +F + M+ F +NM L P V+ L Sbjct: 300 DRTGMRIVIELK-REANANIVLNQLFKFTQMQETFSVNMLALVQTPDKKFEPHVINLRQA 358 Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVM 417 + ++ H+++V+ RR+ F + + R IL+GL IA N+DE+I IIR NE K + Sbjct: 359 IDHYVDHQKDVIVRRTRFELDKAEARAHILEGLKIAIDNLDEVIRIIRSSKNETNAKENL 418 Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477 + RFS +E Q AI+++RL L LE ++++E LLA+ + +L + + I Sbjct: 419 MERFSFSEKQAQAIVDMRLGRLTALEREKLEAEYQELLAKIKYYKDVLANEFMVLDIIKE 478 Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSLKSH 536 E+ E+K F RRT D+ + +IE++ + +++ G+++ L + Sbjct: 479 ELGEIKGKFGDE-----RRTKII----PDETDFDVEDLIEEQDSVITLTHFGYVKRLPTD 529 Query: 537 SVD--------LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GH 586 + + L +E D ++ T D I+ + GK Y L + +GR Sbjct: 530 TYKSQRRGGKGIIGLSTREEDFVENLFTTSTHDYIMFFTNKGKVYRLKTYEIPEAGRQAK 589 Query: 587 GEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIA--NTRKG 638 G AI L+ L+ + + T Y L++ + G +V++++++ + RKG Sbjct: 590 GTAIVNLLQLDQEEKVTTVIPIKEYKEGMYLILATKNG---VVKKTDLMEYDHIRKG 643 >gi|294651105|ref|ZP_06728441.1| DNA topoisomerase (ATP-hydrolyzing) [Acinetobacter haemolyticus ATCC 19194] gi|292822999|gb|EFF81866.1| DNA topoisomerase (ATP-hydrolyzing) [Acinetobacter haemolyticus ATCC 19194] Length = 910 Score = 399 bits (1026), Expect = e-109, Method: Compositional matrix adjust. Identities = 254/732 (34%), Positives = 405/732 (55%), Gaps = 72/732 (9%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 ++ +++ L+ YL YA+S I RA+PD+RDG KPVHRR++ AM E+G D+ A+KKSA Sbjct: 6 IRPIAIEDELKHSYLDYAMSVIVSRALPDVRDGLKPVHRRVLFAMHELGNDYNKAYKKSA 65 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD +VY+++VR+AQ F RY L+ GQGNFG++DGDSAAA RYTE RM Sbjct: 66 RVVGDVIGKYHPHGDSAVYETIVRMAQDFSLRYMLVDGQGNFGSVDGDSAAAMRYTEVRM 125 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 ++ IL +++D VD+ D Y+ + P V P++ PNLL NGT+GIAVGMAT++ HN+ Sbjct: 126 QKLTHEILADLEKDTVDWEDNYDGSERIPQVMPTRIPNLLINGTTGIAVGMATNMAPHNM 185 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ A LA +NP IS+E L+E+I GPDFPTGGII + IV++YR G+G +R ++ Sbjct: 186 TEVVNACLAYANNPNISVEGLMEHITGPDFPTGGIIY-GKSGIVDAYRTGKGRLHIRGKY 244 Query: 257 CVEEVGR-GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLF 314 EE + G IV TEIPYQV K++ IE+IAEL+ K++ + ++RDES E +RI + Sbjct: 245 HFEEDQKTGRTTIVFTEIPYQVNKAKTIERIAELVKEKKLEGISELRDESDKEGMRIAID 304 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K R + ++++ ++F+ + ++ F +NM L G+ P++M L I+ ++ HR+EV+ R Sbjct: 305 LK-RGENAEVVVNNLFLHTQLQNSFSINMVCLDNGQ-PKLMNLKDIIAAFIRHRQEVVTR 362 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN------------------------- 409 R+ F ++ R IL+GL +A NIDEII I+ Sbjct: 363 RTMFELRKARERGHILEGLTVALANIDEIIETIKTSANPAEARERLQAGEWAGGGVVALL 422 Query: 410 ---------------EDKPKPVMVSR--FSLTENQVDAILNLRLRSLRKLEEYQIKSELD 452 ED +P ++ + L+ QV AIL LRL L LE+ ++ +E Sbjct: 423 EKAGAISVRPDEIEGEDPARPFGLTDDVYRLSPTQVAAILELRLHRLTGLEQDKLHAEYT 482 Query: 453 NLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ 512 +L + ++ ++LN +N + IRE + + GRR E+ + ++ Sbjct: 483 EILGQIAELTAILND----FNLLMNVIREELALILQQYGDGRR----TEIVESGVDFCRE 534 Query: 513 AMIEKEPITVVISNRGWIRS--LKSHSVDL------SALHFKEGDSLKIALHAHTTDRIL 564 +I +E + + +S G+ ++ L + SA K+ D ++ + A +L Sbjct: 535 DLIPEEQVVLTVSQTGYAKTQPLSDYQAQRRGGRGKSATAMKDDDIIQHLIVASNHATVL 594 Query: 565 LLSTDGKAYTLPAGNL-LSGRG-HGEAIQLLIDLNHNQDIVTAFV----YDSTCKLLVVS 618 + GK Y L + + RG G I L+ L+ N+ VTA + + + + + Sbjct: 595 CFTDVGKVYRLRVFEVPQASRGAKGRPIINLLPLDANE-TVTAILPLTEFPENHYVFMAT 653 Query: 619 SKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENR-KLLIFSIDQ 677 + G VE ++ G ++++ E+ + V G+ ++ N K + F+ Sbjct: 654 ASGTVKRVELAQFSNIRANGLRAIELNEEDTLIGVAITDGNQQIMLFSNEGKAIRFAETD 713 Query: 678 IPEMSR-GKGVR 688 + M R KGVR Sbjct: 714 VRAMGRTAKGVR 725 >gi|217967649|ref|YP_002353155.1| DNA gyrase, A subunit [Dictyoglomus turgidum DSM 6724] gi|217336748|gb|ACK42541.1| DNA gyrase, A subunit [Dictyoglomus turgidum DSM 6724] Length = 808 Score = 399 bits (1026), Expect = e-109, Method: Compositional matrix adjust. Identities = 238/648 (36%), Positives = 376/648 (58%), Gaps = 64/648 (9%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 V L +E YL YA+S I RA+PD RDG KPV RRII++M E G+ ++KSA +V Sbjct: 10 VGLEREMENSYLDYAMSVIVGRALPDARDGLKPVQRRIIYSMYESGILHNRPYRKSAHVV 69 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G V+G+ HPHGD +VY++LVR+AQ F RYPLI G GNFG+IDGD AA RYTE R++ + Sbjct: 70 GNVLGRYHPHGDAAVYEALVRMAQDFSFRYPLIDGHGNFGSIDGDEPAAMRYTEVRLSPI 129 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A ++ +++D VDF Y+ EPVV P+K P LL NG+SGIAVGMAT+IP HN+ E+ Sbjct: 130 ASELIADIEKDVVDFVPNYDNSLREPVVLPTKIPQLLMNGSSGIAVGMATNIPPHNLGEL 189 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 +A L LI+ P IE+LL +I GPDFPT G I+ + I ESY G+G VR + +E Sbjct: 190 IDALLYLIEKPTAEIEELLNFIKGPDFPT-GGIIIGTKGIRESYLTGKGKLTVRGKLVIE 248 Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFPKNR 318 E +G I++ EIPY V KS L+ +IAEL+ K+I ++D+RDES +R+V+ K + Sbjct: 249 ETKKGDKNIIIKEIPYMVNKSNLLTQIAELVQEKKITGIKDLRDESDRHGIRVVIELK-K 307 Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378 DP +++ ++ + ++T F + M + G+ P++ L +L +L HR++V+ RR+ + Sbjct: 308 DADPKIVINQLYKHTQLQTTFGVIMLAILDGQ-PKIFNLKELLTIFLEHRKDVVIRRTKY 366 Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAILNLR 435 ++ R IL+GLLIA ++DE+I+IIR N +K K ++ RF LT+NQ AIL++R Sbjct: 367 DLEKAKARAHILEGLLIALDHLDEVISIIRQAENSEKAKEKLMLRFKLTQNQAQAILDMR 426 Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495 L L +LE+ ++ E+ + ++ +L K+ W I+ E++E+K+ ++ R Sbjct: 427 LHQLTRLEKERLMEEMKQIKENISILERILKDEKELWRVISEELKEIKKKYADE-----R 481 Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555 +T+ E ++D + ++ P + I+ G+I+ L Sbjct: 482 KTSIEEEEKSDITI--EDILPDNPEVICITQDGYIKRLP--------------------- 518 Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST-CKL 614 LST Y L R G+ + L + +N D++T+FV ST L Sbjct: 519 ----------LST----YQLQ-------RRGGKGLNTLAN--NNDDVITSFVVTSTRSTL 555 Query: 615 LVVSSKGNAFIVEESEIIANTRKG-----KTFLKVSSEEKMKLVVKVT 657 + S+KG + ++ E+ +R+ K +L + +EE++ ++ ++ Sbjct: 556 FLFSNKGKVYSIKTYELDETSRQSKGIAIKEYLNIENEERITEIISLS 603 >gi|291541868|emb|CBL14978.1| DNA gyrase subunit A [Ruminococcus bromii L2-63] Length = 856 Score = 399 bits (1026), Expect = e-109, Method: Compositional matrix adjust. Identities = 240/711 (33%), Positives = 394/711 (55%), Gaps = 30/711 (4%) Query: 3 VDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62 +DN N N + V L+ + + +L Y++S I RA+PD+RDG KPVHRRI++ M+ Sbjct: 1 MDNEQNQNK--NSRIIDVDLQNEMRKSFLDYSMSVIVSRALPDVRDGLKPVHRRILYTMN 58 Query: 63 EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122 ++GLD + K A VG+V+G HPHGD SVYD++VRLAQ F RY L+ G GNFG++D Sbjct: 59 QIGLDPSKPYHKCADTVGQVLGSYHPHGDASVYDAMVRLAQDFSMRYMLVDGHGNFGSVD 118 Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182 GD AAYRYTEARM++++ +L ++++ VDF Y++ EP V PS+FPNLL NG+SG Sbjct: 119 GDPPAAYRYTEARMSKISLEMLTDIEKNTVDFMSNYDDRLKEPTVLPSRFPNLLVNGSSG 178 Query: 183 IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242 IAVGMAT IP HN+ E +A LIDNP+ + +++E + GPDFPTGGII+ R I + Sbjct: 179 IAVGMATEIPPHNLGETIDAVCTLIDNPDAELAEIMECMPGPDFPTGGIIM-GRSGIRAA 237 Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302 Y GRG VRA+ + E G + I+VTE+PY+V K+RLIE IA+L+ KRI + +I Sbjct: 238 YATGRGKITVRAKTEIIEAKNGRYKIIVTELPYKVNKARLIENIADLVKDKRIEGISNIE 297 Query: 303 DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362 D S + R P +++ +F + ++T F M + G P+++ L +L+ Sbjct: 298 DHSDRKGMHIEIDIKRDASPQIVLNQLFSYTQLQTTFGAIMLSIVDGE-PKILSLKEMLQ 356 Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVS 419 ++ + EV+ RR+ F ++ R IL+GL IA IDE+I IIRN K ++ Sbjct: 357 CYIEFQAEVIRRRTDFDLKKARDRAHILEGLKIALDFIDEVIKIIRNSKDTASAKAGLME 416 Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479 RF L + Q AI+ +RL L +E+ +I+ E+ L A+ E+ +L S +Q + EI Sbjct: 417 RFGLDDVQAQAIVQMRLGQLTNMEQTKIEDEIAALHAKIEEYLEILASEPRQLEIVKEEI 476 Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539 +++ ++ RRT C VS + +I +E + ++ G+++ L + + Sbjct: 477 MQIRNKYADP-----RRTEICAVS---GEVDIEDLIPQEECVLTLTQFGYVKRLSADTYK 528 Query: 540 L--------SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQ 591 + S + +E D ++ D +L + G+ Y L + G + + Sbjct: 529 IQRRGGRGVSGMSRREEDIAAEMFVINSHDYVLFFTDKGRVYRLKCYEVPEGSRQSKGVN 588 Query: 592 L--LIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS 646 + LI ++ ++ + + +D L++V+ +G +E + + + G L+++ Sbjct: 589 IANLIPISPDEKVTSMIRVPEFDEEKYLVMVTRQGIIKRIELNAYNTSRKGGLIALELNE 648 Query: 647 EEKMKLVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSR-GKGVRLQSYKDG 695 +++ V G+ ++ + + I F+ I M R +GV+ + K+G Sbjct: 649 GDELAWVRMTDGNSQVIIATKKGMAIRFNETDIRAMGRQARGVKAMALKEG 699 >gi|170758200|ref|YP_001785342.1| DNA gyrase subunit A [Clostridium botulinum A3 str. Loch Maree] gi|169405189|gb|ACA53600.1| DNA gyrase, A subunit [Clostridium botulinum A3 str. Loch Maree] Length = 831 Score = 399 bits (1026), Expect = e-109, Method: Compositional matrix adjust. Identities = 253/694 (36%), Positives = 408/694 (58%), Gaps = 38/694 (5%) Query: 12 LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71 L E + V + +++ Y+ YA+S I RA+PD+RDG KPVHRRII++M +GL Sbjct: 2 LNEGKILPVDVSKEMKKCYIDYAMSVIAGRALPDVRDGLKPVHRRIIYSMQGLGLSPEKG 61 Query: 72 FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131 ++K ARIVG+V+GK HPHGD +VY++LVRLAQ F RY L+ G GNFG++DGDSAAA RY Sbjct: 62 YRKCARIVGDVLGKYHPHGDTAVYEALVRLAQDFSIRYTLVDGHGNFGSVDGDSAAAMRY 121 Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191 TEA+M++++ +++ ++++ VDF ++ E+ EP V PS+FPNLL NG++GIAVGMAT+I Sbjct: 122 TEAKMSKISMELIKDINKNTVDFIPNFDGEEEEPSVLPSRFPNLLVNGSAGIAVGMATNI 181 Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251 P HN+ E+ + + LI+N +++I L+ I GPDFPT G+IV +R I E+Y GRG Sbjct: 182 PPHNLTEVIDGIIMLIENEDVTIMDLMTKIKGPDFPTSGLIVGTR-GIREAYETGRGKVI 240 Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VR 310 +RA+ +EE +G I+VTEIPYQV K+RLIE +A L+ K+I + D+RDES D +R Sbjct: 241 IRAKADIEE-EKGRNRIIVTEIPYQVNKARLIENMANLVKDKKINGISDLRDESDRDGMR 299 Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370 IV+ K R +P++++ ++ + ++ F + M L + PQV+ L IL +L ++E Sbjct: 300 IVIELK-RDANPNVVLNQLYKHTKLQDTFGIIMLAL-VNNQPQVLNLKEILVNYLEFQKE 357 Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQ 427 V+ RR+ F + R IL+GL IA +IDE+I +IR N + K +++ F+L+E Q Sbjct: 358 VIRRRTKFDLDKALARAHILEGLRIALDHIDEVIKLIRSSKNAAEAKEGLMNNFNLSEKQ 417 Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487 AIL+++L+ L LE +I+ E L+ +L+ + + I E+ E+K + Sbjct: 418 AQAILDMKLQRLTGLEREKIEEEYKELMERIGYFRQILDKEELVLSIIKEELTEIKNKYG 477 Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSVD 539 RRT E+ + + + +IE + + V +++ G+I+ L K Sbjct: 478 DE-----RRT---EIVKGEHDIDIEDLIEDKKVIVTLTHGGYIKRLDMDTYSSQKRGGKG 529 Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEAIQLLIDLN 597 + A K+ D ++ T IL + GK Y L A + +GR G I +I + Sbjct: 530 IQATSTKQDDFIENMFVTSTHSTILFFTNRGKVYKLKAYEIPEAGRTAKGTNIVNIIPIE 589 Query: 598 HNQDIVTAFVY---DSTCKLLVVSSKGNAFIVEESEII--ANTRKGKTFLKVSSEEKMKL 652 +N+ I T D ++ + G I++++EI+ ++ RKG + ++ E +L Sbjct: 590 NNEKIQTVIGLKDIDDMKHFVMCTRNG---IIKKTEIVKYSSIRKG-GLIAINLREDDEL 645 Query: 653 V-VKVT--GDHVAVVGENRKLLIFSIDQIPEMSR 683 + VK+T + + +V +N + F+ + M R Sbjct: 646 IDVKMTKGNNEIIIVTQNGYCIRFNEKDVRPMGR 679 >gi|309972999|gb|ADO96200.1| DNA gyrase subunit A [Haemophilus influenzae R2846] Length = 882 Score = 399 bits (1026), Expect = e-109, Method: Compositional matrix adjust. Identities = 252/659 (38%), Positives = 377/659 (57%), Gaps = 64/659 (9%) Query: 13 VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72 ++ ++ V++ L+ YL YA+S I RA+PD+RDG KPVHRR++ +M G + Sbjct: 5 IQSSITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDREGNTANKKY 64 Query: 73 KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132 KSAR+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG+IDGD+ AA RYT Sbjct: 65 VKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRYT 124 Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192 E RM ++ + +L +D+ V+F Y+ E P V P++ P LLANG+SGIAVGMAT+IP Sbjct: 125 EVRMQKITQALLTDLDKKTVNFSPNYDGELMIPDVLPTRIPALLANGSSGIAVGMATNIP 184 Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252 HN+ E+ LA IDN EI+I++L+++I GPDFPT +I R+ I E+YR GRG V Sbjct: 185 PHNLNEVLNGCLAYIDNNEITIDELMQHIPGPDFPTAALI-NGRKGIEEAYRAGRGKVYV 243 Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRI 311 RAR VE +G I+V+E+PYQV K++L+EKIAELI K+I + +I D S E +RI Sbjct: 244 RARATVETNEKGREQIIVSELPYQVNKAKLVEKIAELIREKKIEGISNITDLSNKEGIRI 303 Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371 + K R ++++ ++ L+ M+ F +NM L G+ P++ L I++ ++ HRREV Sbjct: 304 EIDIK-RDAVGEVVLNHLYSLTQMQVTFGINMVALDHGQ-PRLFNLKEIIEAFVLHRREV 361 Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSR-------- 420 + RRS F ++ R IL+GL +A NIDE+IAIIRN ++ + SR Sbjct: 362 VTRRSIFELRKARERTHILEGLAVARSNIDEMIAIIRNSKNREEAATAISSRSWTLHSDI 421 Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457 + L+ QV+AIL LRL L + ++ E + LL + Sbjct: 422 INLLDVSARPDELEENLGIQGEQYYLSPAQVNAILELRLHRLTGIAFEEVIKEYEELLVK 481 Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517 + +L+S ++ I E+ EVK F G R T E++ A + +I + Sbjct: 482 IADLLHILSSAERLMEVIREELEEVKAQF------GDDRLT--EITAASGDIDLEDLIAQ 533 Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569 E + V +S+ G+++ + + SA KE D ++ L A+T D IL S+ Sbjct: 534 EDVVVTLSHEGYVKYQPLTDYEAQRRGGKGKSATKMKEEDFIEKLLVANTHDTILCFSSR 593 Query: 570 GKAYTLPAGNL-LSGRG-HGEAIQLLIDLNHNQDI-----VTAFVYDSTCKLLVVSSKG 621 G+ Y L L + RG G I ++ L N+ I V+A+ D K +V+++ G Sbjct: 594 GRLYWLKVYQLPQASRGARGRPIVNILPLQENERITAILPVSAYEED---KFVVMATAG 649 >gi|259502125|ref|ZP_05745027.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus antri DSM 16041] gi|259169938|gb|EEW54433.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus antri DSM 16041] Length = 835 Score = 399 bits (1026), Expect = e-109, Method: Compositional matrix adjust. Identities = 221/571 (38%), Positives = 349/571 (61%), Gaps = 22/571 (3%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + V L ++ +L YA+S I RA+PD+RDG KPV RRI++ M+E+G+ +KKSA Sbjct: 5 ITDVKLTSQMKNSFLDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVTPDKPYKKSA 64 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 RIVG+V+GK HPHGD S+Y+ LVR+AQ F RY L+ G GNFG++DGDSAAA RYTEARM Sbjct: 65 RIVGDVMGKFHPHGDSSIYEGLVRMAQDFSYRYMLVDGHGNFGSVDGDSAAAMRYTEARM 124 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 +++A +L+ +++D VDF Y+ + EP V P++FPNLL NG SGIAVGMAT+IP+HN+ Sbjct: 125 SKIALEMLRDINKDTVDFTPNYDGTEKEPAVLPARFPNLLVNGASGIAVGMATNIPTHNL 184 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ A L++NP+++I +L++ + GPDFPTGG+++ + I ++Y GRG VRA+ Sbjct: 185 GEVISAIHMLMNNPDVTIPELMKALPGPDFPTGGVVM-GKAGIRKAYETGRGSIIVRAKV 243 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316 +EE G I+V EIPY V K+ LI +IA+L K I + D+ DE+ D ++ Sbjct: 244 DIEEQKNGKQRIIVHEIPYMVNKANLISRIADLARNKEIDGITDVNDETDRDGMRIVIDV 303 Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376 R ++++ +++ ++ M+T F NM + G P+++ L IL+ +L H+ +V+ RR+ Sbjct: 304 RRDASAEVILNNLYKMTLMQTTFNFNMLAIVNG-APKILSLKQILQYYLEHQEDVVRRRT 362 Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAILN 433 F ++ R+ I++GL IA +IDEII IIR K ++ + L++ Q AIL+ Sbjct: 363 EFDLKKAQSRLHIVEGLRIALDHIDEIINIIRQSQTSEVAKGELMGNYGLSDRQAQAILD 422 Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493 +RL L LE +I++E L +L + K++ NQI + E+ EI K D Sbjct: 423 MRLVRLTGLEREKIEAEYQKLTEAIADYKDIL-AHKERINQIIYD--ELMEIQKKFGD-- 477 Query: 494 RRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSL-----KSH---SVDLSALH 544 +RRT E+ D ++ + +IE++ I V +++ G+I+ L KS + + Sbjct: 478 KRRT---ELQVGDITNIEDEDLIEEQDIIVTLTHNGYIKRLPVDEFKSQHRGGRGVKGMG 534 Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575 D ++ + + T D +L + GK Y++ Sbjct: 535 VHNDDFIEQLISSSTHDLLLFFTNSGKVYSM 565 >gi|224025875|ref|ZP_03644241.1| hypothetical protein BACCOPRO_02618 [Bacteroides coprophilus DSM 18228] gi|224019111|gb|EEF77109.1| hypothetical protein BACCOPRO_02618 [Bacteroides coprophilus DSM 18228] Length = 854 Score = 399 bits (1026), Expect = e-109, Method: Compositional matrix adjust. Identities = 256/729 (35%), Positives = 404/729 (55%), Gaps = 61/729 (8%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 ++ + +++ ++ Y+ Y++S I RA+PD+RDGFKPVHRRI++ M E+G +K Sbjct: 4 QDRIIKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMMELGNTSDKPYK 63 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSARIVGEV+GK HPHGD SVY +LVR+AQ + RYPL+ GQGNFG++DGDS AA RYTE Sbjct: 64 KSARIVGEVLGKYHPHGDSSVYGALVRMAQDWAMRYPLVDGQGNFGSVDGDSPAAMRYTE 123 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 AR+ ++ E ++Q + ++ VDF++ +++ EPVV P++ PNLL NG SGIAVGMAT++P+ Sbjct: 124 ARLKKIGEDMMQDLYKETVDFQNNFDDTLQEPVVMPTRIPNLLVNGASGIAVGMATNMPT 183 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E+ +A +A IDN EI I+ L++YI PDFPTGG I + ++Y GRG +R Sbjct: 184 HNLSEVIDACVAYIDNNEIDIDGLMQYIKAPDFPTGGYIY-GISGVRDAYETGRGRVIMR 242 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312 A+ +E IVV EIPY V K LIE IA L+ K+I + + DES E +RIV Sbjct: 243 AKAEIESHPTHDK-IVVNEIPYNVNKKELIESIASLVNEKKIDGISYVNDESDREGMRIV 301 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 + K R + +++ +F ++ ++T F +N L GR P+++ L +++ ++ HR EV+ Sbjct: 302 IDVK-RDANASVVLNKLFKMTALQTSFGVNNIALVHGR-PKLLNLKDLIQLFVEHRHEVI 359 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVD 429 RR+ + ++ R IL+GL+IA NIDE+I IIR P ++ RF L+E Q Sbjct: 360 IRRTQYDLRKAKERAHILEGLIIASDNIDEVIRIIRAAKTPNEAITNLMERFQLSEVQAR 419 Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489 AI+ +RLR L L + Q+ +E ++L+ + + +L + + I E+ EVKE + Sbjct: 420 AIVEMRLRQLTGLMQDQLHAEYEDLMKQIAYFEEILVNEELCKKVIKDELIEVKEKYGD- 478 Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLS 541 +RR+ E+ A + + + + + IS+ G+I R+ V Sbjct: 479 ----KRRS---EIVYASEEFNPEDFYADDEMVITISHLGYIKRTPLSEFRAQNRGGVGSK 531 Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL-----PAGNLLSGRGHGEAIQLLIDL 596 ++ D ++ A + +L + GK Y L P GN S G AIQ L+++ Sbjct: 532 GSETRDEDFIEHIYPATMHNTMLFFTQKGKCYWLKVYEIPEGNKTS---KGRAIQNLLNI 588 Query: 597 NHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG---KTFLKVSSEEKMKLV 653 + + D+VTA+ L V + + + ++ T+ G KT L+ S + V Sbjct: 589 DAD-DVVTAY--------LRVKNLNDTEFINSHYVLFCTKNGVIKKTLLEQYSRPRQNGV 639 Query: 654 VKVT---------------GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGI 697 +T + + + N + + F + EM R GVR + + G Sbjct: 640 NAITIREDDRVIEVRMTNGNNEIVIANRNGRAIRFHESAVREMGRTATGVRGITLDEDGQ 699 Query: 698 SDVICFKIC 706 +VI IC Sbjct: 700 DEVIGM-IC 707 >gi|119472399|ref|ZP_01614517.1| DNA gyrase, subunit A, type II topoisomerase [Alteromonadales bacterium TW-7] gi|119444921|gb|EAW26219.1| DNA gyrase, subunit A, type II topoisomerase [Alteromonadales bacterium TW-7] Length = 891 Score = 399 bits (1026), Expect = e-109, Method: Compositional matrix adjust. Identities = 246/636 (38%), Positives = 367/636 (57%), Gaps = 67/636 (10%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 V++ L+ YL YA+S I RA+PD+RDG KPVHRR++ AM+E+ D+ +KKSAR+V Sbjct: 11 VNIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELSNDWNKPYKKSARVV 70 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG++DGDSAAA RYTE RM ++ Sbjct: 71 GDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEVRMAKM 130 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 + +L ++++ VDF Y+ + P V P+K PNLL NG+SGIAVGMAT+IP HN+ E+ Sbjct: 131 SHELLADLEKETVDFVPNYDGTEQIPDVLPTKVPNLLVNGSSGIAVGMATNIPPHNLTEV 190 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 LALI NP+++I +L++YI GPDFPT II ++ I ++Y+ GRG +RAR +E Sbjct: 191 INGCLALIVNPDLTITELMDYIPGPDFPTAAII-NGKKGIEQAYQTGRGKVYMRARADIE 249 Query: 260 -EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKN 317 + G I+V EIPYQV K+RLIEKIAEL+ K+I + +RDES +D +RIV+ K Sbjct: 250 TDEKTGRETIIVHEIPYQVNKARLIEKIAELVKDKKIEGISALRDESDKDGMRIVIEIKR 309 Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377 + ++++ +++ + ++T F +NM L + P+ L +L+E++ HRREV+ RR+ Sbjct: 310 GDVG-EVILNNLYAQTQLQTVFGMNMVAL-INNQPKCFNLKEMLEEFIIHRREVVTRRTV 367 Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS------------------ 419 F ++ R +L+GL IA NID II +IR P ++ Sbjct: 368 FDLRKARDRAHMLEGLAIALANIDPIIELIRKSPTPAEAKIALTARSWELGNVKAMLEKA 427 Query: 420 --------------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKE 459 ++ ++E Q AIL+LRL L LE +I SE LL Sbjct: 428 GEANVARPDWLADDLGIRDGQYFISEQQAQAILDLRLHKLTGLEHEKILSEYQTLLDLIA 487 Query: 460 KIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEP 519 ++ +L S ++ I E+ E+K + RRT E++ A + +I +E Sbjct: 488 ELLHILASPERLMEVIRDELVEIKAQYGDE-----RRT---EINAAAHDISLEDLITEEN 539 Query: 520 ITVVISNRGWIR--SLKSHSVDL------SALHFKEGDSLKIALHAHTTDRILLLSTDG- 570 + V +S+ G+++ +L + SA K+ D ++ L A+T D IL ST G Sbjct: 540 VVVTLSHEGYVKYQALSDYEAQRRGGKGKSATKMKDEDFIERLLVANTHDTILCFSTAGR 599 Query: 571 ----KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602 K Y LP L S G+ I L+ L ++ I Sbjct: 600 LYWLKVYQLP---LASRAARGKPIVNLLPLEADERI 632 >gi|33152761|ref|NP_874114.1| DNA gyrase subunit A [Haemophilus ducreyi 35000HP] gi|33148985|gb|AAP96503.1| DNA gyrase subunit A [Haemophilus ducreyi 35000HP] Length = 900 Score = 399 bits (1026), Expect = e-109, Method: Compositional matrix adjust. Identities = 234/606 (38%), Positives = 346/606 (57%), Gaps = 55/606 (9%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 +++ VS+ L+ YL YA+S I RA+PD+RDG KPVHRR++ +M F K Sbjct: 6 KDITPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDRNSNTFNKPHVK 65 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 SAR+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG+IDGD+ AA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRYTEV 125 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 RM ++ + +L +D++ VD+ Y+ ++ P V P+K P LL NG+SGIAVGMAT+IP H Sbjct: 126 RMQKITQELLTDLDKETVDYSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATNIPPH 185 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 N+ E+ + LA I+N ++SIE+L+ +I GPDFPTG II R+ I ++Y GRG VRA Sbjct: 186 NLNEVLDGCLAYIENDQLSIEELMRFIPGPDFPTGAII-NGRKGIEDAYCTGRGKVYVRA 244 Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314 + VE+ + I+VTE+PYQV K++LIEKIAEL+ K+I + I+D S + ++ Sbjct: 245 KATVEKTEKNREQIIVTELPYQVNKAKLIEKIAELVKDKKIDGISSIQDHSDKKGISIVI 304 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 R ++++ ++ L+ M+ F +NM L G+ P+V+ L I++ ++ HRREV+ R Sbjct: 305 EIKRDAVGEVVLNHLYSLTQMQVTFGINMVALDHGQ-PKVLNLKQIIEAFVKHRREVVTR 363 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE------------------------ 410 R+ F ++ R IL+GL IA NID +I +IR Sbjct: 364 RTIFELRKARERAHILEGLAIALANIDPVIELIRQSKTAEEARLALLDRAWSLGNVAPML 423 Query: 411 -----DKPKP--------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457 D +P V + L+E Q AIL LRL L LE +I E LL E Sbjct: 424 EAAGVDASRPEDLAVELGVHNGEYHLSEAQARAILELRLHRLTGLEHEKIVDEYKQLLTE 483 Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517 ++ +LNS ++ I E+ +VK F RRT E++ A + +I + Sbjct: 484 IGELLHILNSAERLMQVIREELEKVKAEFGDE-----RRT---EITAASGDINLEDLIAQ 535 Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569 E + V +S+ G+++ + + SA KE D ++ L A+T D IL S+ Sbjct: 536 EDVVVTLSHAGYVKYQPLSDYEAQRRGGKGKSATKMKEDDFIEKLLVANTHDTILCFSSR 595 Query: 570 GKAYTL 575 G+ Y L Sbjct: 596 GRLYQL 601 >gi|297158797|gb|ADI08509.1| DNA gyrase subunit A [Streptomyces bingchenggensis BCW-1] Length = 869 Score = 399 bits (1026), Expect = e-109, Method: Compositional matrix adjust. Identities = 236/627 (37%), Positives = 361/627 (57%), Gaps = 34/627 (5%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 V+ V L ++ YL YA+S I RA+PD+RDG KPVHRR+++AM + G F K A Sbjct: 21 VEPVGLETEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMYDGGYRPEKGFYKCA 80 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+V+G HPHGD S+YD+LVRLAQP+ R PL+ GNFG+ D AAA RYTE +M Sbjct: 81 RVVGDVMGTYHPHGDSSIYDALVRLAQPWSMRMPLVDSNGNFGSPGNDPAAAMRYTECKM 140 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 ++ +++ +DED VDF+D Y+ + EP V P++FPNLL NG++GIAVGMAT+IP HN+ Sbjct: 141 APLSMEMIRDIDEDTVDFQDNYDGRNQEPTVLPARFPNLLINGSAGIAVGMATNIPPHNL 200 Query: 197 QEICEAALALIDNPEISIEKLLEYII----GPDFPTGGIIVESRESIVESYRLGRGGFRV 252 +E+ E A + NPE + E+LL+ +I GPDFPTG ++V R+ I E+YR GRG + Sbjct: 201 REVAEGAQWFLANPEATPEELLDALIDRIKGPDFPTGALVV-GRKGIEEAYRTGRGSITM 259 Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV--R 310 RA VEE+ +G C+VVTE+PYQV L +KIA+L+ RI + D+RDE++ R Sbjct: 260 RAVVEVEEI-QGRQCLVVTELPYQVNPDNLAQKIADLVKEARIGGIADVRDETSSRTGQR 318 Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370 +V+ K R +++ +++ +D++T F NM L G VP+ + LD ++ W+ H+ E Sbjct: 319 LVIVLK-RDAVAKVVLNNLYKHTDLQTNFGANMLALVDG-VPRTLSLDAFIRNWVTHQIE 376 Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQ 427 V+ RR+ FR++ + R IL+GLL A IDE+IA+IR D + ++ ++ E Q Sbjct: 377 VIVRRTRFRLRKAEERAHILRGLLKALDAIDEVIALIRRSDTVEIARGGLMDLLTIDEIQ 436 Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487 +AIL ++LR L LE +I E D L A+ + +++L S ++Q I+ E+ + E + Sbjct: 437 ANAILEMQLRRLAALERQKIIQEHDELQAKINEYNAILASPERQRQIISEELTAIVEKYG 496 Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVD 539 RRT D + +I +E I V IS G++ RS K Sbjct: 497 DD-----RRTKLIPF---DGDMSIEDLIAEEDIVVTISRGGYVKRTKTEDYRSQKRGGKG 548 Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEAIQLLIDLN 597 + K+ D + + T +L + G+ Y A L +GR G+ + L+ Sbjct: 549 VRGTKLKQDDIVDHFFVSTTHHWLLFFTNKGRVYRAKAYELPDAGREARGQHVANLLAFQ 608 Query: 598 HNQDIVTAFV---YDSTCKLLVVSSKG 621 ++ I Y++ L++ + G Sbjct: 609 PDEQIAQILAIRDYEAAPYLVLATKSG 635 >gi|152985032|ref|YP_001347342.1| DNA gyrase subunit A [Pseudomonas aeruginosa PA7] gi|150960190|gb|ABR82215.1| DNA gyrase, A subunit [Pseudomonas aeruginosa PA7] Length = 921 Score = 399 bits (1026), Expect = e-109, Method: Compositional matrix adjust. Identities = 236/604 (39%), Positives = 357/604 (59%), Gaps = 59/604 (9%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 V++ L++ YL YA+S I RA+PD RDG KPVHRR+++AMSE+G D+ +KKSAR+V Sbjct: 11 VNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMSELGNDWNKPYKKSARVV 70 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG++DGD+AAA RYTE RM ++ Sbjct: 71 GDVIGKYHPHGDIAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDNAAAMRYTEVRMAKL 130 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A +L ++++ VD+ Y+ + P V P+K PNLL NG+SGIAVGMAT+IP HN+ E+ Sbjct: 131 AHELLADLEKETVDWVPNYDGTEQIPAVMPTKIPNLLVNGSSGIAVGMATNIPPHNLGEV 190 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 + LAL+DNP++++++L++YI GPDFPT GII R I+E+YR GRG +RAR VE Sbjct: 191 IDGCLALMDNPDLTVDELMQYIPGPDFPTAGII-NGRAGIIEAYRTGRGRIYIRARAVVE 249 Query: 260 EV--GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317 E+ G G I++TE+PYQ+ K+RLIEKIAEL+ K+I + ++RDES +D V+ Sbjct: 250 EMEKGGGREQIIITELPYQLNKARLIEKIAELVKEKKIEGISELRDESDKDGMRVVIELR 309 Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377 R ++++ +++ + +++ F +N+ L G+ P+ + L +L+ ++ HRREV+ RR+ Sbjct: 310 RGEVGEVVLNNLYAQTQLQSVFGINVVALVDGQ-PRTLNLKDMLEVFVRHRREVVTRRTV 368 Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK----------------PVMVSR- 420 + ++ R IL+G +A NID +I +I++ P MV R Sbjct: 369 YELRKARERGHILEGQAVALSNIDPVIELIKSSPTPAEAKERLIATAWESSAVEAMVERA 428 Query: 421 --------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEK 460 + L+ Q AIL LRL L LE ++ SE +L + Sbjct: 429 GADACRPEDLDPQYGLRDGKYYLSPEQAQAILELRLHRLTGLEHEKLLSEYQEILNLIGE 488 Query: 461 IDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA-MIEKEP 519 + +L + + I E+ VK F + RRT A + L A +I +E Sbjct: 489 LIRILTNPARLMEVIREELEAVKAEFGDA-----RRTEIV----ASQVDLTIADLITEED 539 Query: 520 ITVVISNRGWIRS--LKSHSVDL------SALHFKEGDSLKIALHAHTTDRILLLSTDGK 571 V IS+ G+ +S L ++ SA K+ D ++ L A++ +LL S+ GK Sbjct: 540 RVVTISHGGYAKSQPLAAYQAQRRGGKGKSATGMKDEDYIEHLLVANSHATLLLFSSKGK 599 Query: 572 AYTL 575 Y L Sbjct: 600 VYWL 603 >gi|16273182|ref|NP_439419.1| DNA gyrase subunit A [Haemophilus influenzae Rd KW20] gi|260581180|ref|ZP_05849000.1| DNA gyrase, A subunit [Haemophilus influenzae RdAW] gi|1170144|sp|P43700|GYRA_HAEIN RecName: Full=DNA gyrase subunit A gi|1574722|gb|AAC22917.1| DNA gyrase, subunit A (gyrA) [Haemophilus influenzae Rd KW20] gi|260092208|gb|EEW76151.1| DNA gyrase, A subunit [Haemophilus influenzae RdAW] Length = 880 Score = 399 bits (1025), Expect = e-109, Method: Compositional matrix adjust. Identities = 250/659 (37%), Positives = 375/659 (56%), Gaps = 64/659 (9%) Query: 13 VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72 ++ ++ V++ L+ YL YA+S I RA+PD+RDG KPVHRR++ +M G + Sbjct: 5 IQSSITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDREGNTANKKY 64 Query: 73 KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132 KSAR+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG+IDGD+ AA RYT Sbjct: 65 VKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRYT 124 Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192 E RM ++ + +L +D++ V+F Y+ E P V P++ P LLANG+SGIAVGMAT+IP Sbjct: 125 EVRMQKITQALLTDLDKETVNFSPNYDGELMIPDVLPTRIPALLANGSSGIAVGMATNIP 184 Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252 HN+ E+ LA ID EI+I++L+++I GPDFPT +I R+ I E+YR GRG V Sbjct: 185 PHNLNEVLNGCLAYIDKNEITIDELMQHIPGPDFPTAALI-NGRKGIEEAYRTGRGKVYV 243 Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRI 311 RAR VE +G I+V+E+PYQV K++L+EKIAELI K+I + +I D S E +RI Sbjct: 244 RARATVETNEKGREQIIVSELPYQVNKAKLVEKIAELIREKKIEGISNITDLSNKEGIRI 303 Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371 + K R ++++ ++ L+ M+ F +NM L G+ P++ L I++ ++ HRREV Sbjct: 304 EIDIK-RDAVGEVVLNHLYSLTQMQVTFGINMVALDHGQ-PRLFNLKEIIEAFVLHRREV 361 Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS------------ 419 + RRS F ++ R IL+GL +A NIDE+IAIIRN + S Sbjct: 362 VTRRSIFELRKARERTHILEGLAVARSNIDEMIAIIRNSKNREEAATSISSRSWTLHSDI 421 Query: 420 ----------------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457 ++ L+ QV+AIL LRL L + ++ E + LL + Sbjct: 422 INLLDASARPDELEENLGIQGEQYYLSPAQVNAILELRLHRLTGIAFEEVIKEYEELLVK 481 Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517 + +L+S ++ I E+ EVK F G R T E++ A + +I + Sbjct: 482 IADLLHILSSAERLMEVIREELEEVKAQF------GDDRLT--EITAASGDIDLEDLIAQ 533 Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569 E + V +S+ G+++ + + SA KE D ++ L A+T D IL S+ Sbjct: 534 EDVVVTLSHEGYVKYQPLTDYEAQRRGGKGKSATKMKEEDFIEKLLVANTHDTILCFSSR 593 Query: 570 GKAYTLPAGNL-LSGRG-HGEAIQLLIDLNHNQDI-----VTAFVYDSTCKLLVVSSKG 621 G+ Y L L + RG G I ++ L N+ I V+A+ D K +V+++ G Sbjct: 594 GRLYWLKVYQLPQASRGARGRPIVNILPLQENERITAILPVSAYEED---KFVVMATAG 649 >gi|317054742|ref|YP_004103209.1| DNA gyrase subunit A [Ruminococcus albus 7] gi|315447011|gb|ADU20575.1| DNA gyrase, A subunit [Ruminococcus albus 7] Length = 836 Score = 399 bits (1025), Expect = e-109, Method: Compositional matrix adjust. Identities = 225/616 (36%), Positives = 361/616 (58%), Gaps = 35/616 (5%) Query: 26 LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85 ++E +L Y+++ I RA+PD+RDG KPVHRRI++ M E GL A++K A VG V+G+ Sbjct: 15 MKESFLQYSMAVIVSRALPDVRDGLKPVHRRILYTMHENGLTPDQAYRKCADTVGSVLGR 74 Query: 86 LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145 HPHGD SVYD+LVRLAQ F RYPL+ G GNFG++DGD AAYRYTEA+M ++A +L Sbjct: 75 YHPHGDASVYDALVRLAQSFSLRYPLVDGHGNFGSVDGDPPAAYRYTEAKMAKMAVNMLT 134 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 + +D VDF+ Y++ EP V PS+FPN+L NG GIAVGMAT+IP HN+ E+ E Sbjct: 135 DIKKDTVDFQSNYDDRLQEPCVLPSRFPNILCNGAVGIAVGMATNIPPHNLHEVIEGMKI 194 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265 +I NP+ ++++L++ I GPDFPTGGII+ R I +Y GRG +R++ +EE+ +G Sbjct: 195 VIQNPDCTLDELMQAIKGPDFPTGGIIM-GRSGIRAAYGTGRGKITLRSKTSIEEI-KGR 252 Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325 CIVVTEIPY V K++L+E IA L+ KR+ + D+RDE++ D ++ + +P ++ Sbjct: 253 NCIVVTEIPYMVNKAKLVESIAGLVKDKRVEGIHDLRDETSRDGMRIVIELKKDANPQVV 312 Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385 + +F + ++ + + L G +P+++ L IL+E++ + V+ RR+ F ++ Sbjct: 313 LNKLFSYTQLQDSVGVILLALVNG-IPKILTLKQILQEYIDFQVSVIRRRTEFDLKKAKE 371 Query: 386 RVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAILNLRLRSLRKL 442 R IL+GL+IA NIDE+I I++N + K + +RF LT+ Q D I + L L + Sbjct: 372 REHILQGLVIALDNIDEVIEIMKNSKSIPEAKQKLCTRFGLTDVQADHIAQMTLGRLTGM 431 Query: 443 EEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEV 502 E +I EL + A ++ +L + ++ ++ I E+ ++E F RRT V Sbjct: 432 ERQKIIDELAEITATVADLEDILANEQRVFDIIIEEVEAIQEKFGDE-----RRTQIENV 486 Query: 503 SRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSVDLSALHFKEGDSLKIA 554 S + +I E V +N G+I+ + ++ + +E D + Sbjct: 487 S---GEVDIEDLIPVEESVVTYTNVGYIKRMPISVYKAQNRGGKGVTGMKQREDDCITEM 543 Query: 555 LHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV-- 607 + D IL ++T G K Y LP G+ S G I+ L++L+ + +++ A + Sbjct: 544 SVCSSHDNILFITTKGIAYKMKCYELPEGSKAS---RGVNIKNLLELS-DDNLIAAMIKV 599 Query: 608 --YDSTCKLLVVSSKG 621 +D +++V+ +G Sbjct: 600 EDFDDDKYIVMVTKRG 615 >gi|218890640|ref|YP_002439504.1| DNA gyrase subunit A [Pseudomonas aeruginosa LESB58] gi|218770863|emb|CAW26628.1| DNA gyrase subunit A [Pseudomonas aeruginosa LESB58] Length = 923 Score = 399 bits (1025), Expect = e-109, Method: Compositional matrix adjust. Identities = 236/604 (39%), Positives = 357/604 (59%), Gaps = 59/604 (9%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 V++ L++ YL YA+S I RA+PD RDG KPVHRR+++AMSE+G D+ +KKSAR+V Sbjct: 11 VNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMSELGNDWNKPYKKSARVV 70 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG++DGD+AAA RYTE RM ++ Sbjct: 71 GDVIGKYHPHGDIAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDNAAAMRYTEVRMAKL 130 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A +L ++++ VD+ Y+ + P V P+K PNLL NG+SGIAVGMAT+IP HN+ E+ Sbjct: 131 AHELLADLEKETVDWVPNYDGTEQIPAVMPTKIPNLLVNGSSGIAVGMATNIPPHNLGEV 190 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 + LAL+DNP++++++L++YI GPDFPT GII R I+E+YR GRG +RAR VE Sbjct: 191 IDGCLALMDNPDLTVDELMQYIPGPDFPTAGII-NGRAGIIEAYRTGRGRIYIRARAVVE 249 Query: 260 EV--GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317 E+ G G I++TE+PYQ+ K+RLIEKIAEL+ K+I + ++RDES +D V+ Sbjct: 250 EMEKGGGREQIIITELPYQLNKARLIEKIAELVKEKKIEGISELRDESDKDGMRVVIELR 309 Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377 R ++++ +++ + +++ F +N+ L G+ P+ + L +L+ ++ HRREV+ RR+ Sbjct: 310 RGEVGEVVLNNLYAQTQLQSVFGINVVALVDGQ-PRTLNLKDMLEVFVRHRREVVTRRTV 368 Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK----------------PVMVSR- 420 + ++ R IL+G +A NID +I +I++ P MV R Sbjct: 369 YELRKARERGHILEGQAVALSNIDPVIELIKSSPTPAEAKERLIATAWESSAVEAMVERA 428 Query: 421 --------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEK 460 + L+ Q AIL LRL L LE ++ SE +L + Sbjct: 429 GADACRPEDLDPQYGLRDGKYYLSPEQAQAILELRLHRLTGLEHEKLLSEYQEILNLIGE 488 Query: 461 IDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA-MIEKEP 519 + +L + + I E+ VK F + RRT A + L A +I +E Sbjct: 489 LIRILTNPARLMEVIREELEAVKAEFGDA-----RRTEIV----ASQVDLTIADLITEED 539 Query: 520 ITVVISNRGWIRS--LKSHSVDL------SALHFKEGDSLKIALHAHTTDRILLLSTDGK 571 V IS+ G+ +S L ++ SA K+ D ++ L A++ +LL S+ GK Sbjct: 540 RVVTISHGGYAKSQPLAAYQAQRRGGKGKSATGMKDEDYIEHLLVANSHATLLLFSSKGK 599 Query: 572 AYTL 575 Y L Sbjct: 600 VYWL 603 >gi|294507491|ref|YP_003571549.1| DNA gyrase subunit A [Salinibacter ruber M8] gi|294343819|emb|CBH24597.1| DNA gyrase subunit A [Salinibacter ruber M8] Length = 777 Score = 399 bits (1025), Expect = e-109, Method: Compositional matrix adjust. Identities = 222/603 (36%), Positives = 350/603 (58%), Gaps = 22/603 (3%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM-SEMGLDFGAAFKKS 75 + + L ERYL YALS I RA+PD+RDG KPV RRI+ AM + L +KS Sbjct: 4 TETIPLHETARERYLNYALSVITSRALPDIRDGLKPVQRRILFAMFDSLNLYPSKRHRKS 63 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 A +VGE +GK HPHGD+++YD++VR+AQ F R PL+ G GNFG++DGDSAAA RYTEA+ Sbjct: 64 ATVVGETMGKYHPHGDKAIYDAMVRMAQSFSLRAPLVDGHGNFGSLDGDSAAAMRYTEAK 123 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 + +A +L+G+ ++ VD+RD ++ EPVV P++ PNLL NG SGIAVGMAT+IP HN Sbjct: 124 LQPLAMEMLEGLRDETVDYRDNFDGSLEEPVVLPARVPNLLVNGASGIAVGMATNIPPHN 183 Query: 196 VQEICEAALALIDNPEISIEKLL-EYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 + E+ +AAL +I+ PE+ L+ ++I GPDFPTGG I+ +++ + E Y G G +R Sbjct: 184 LGEVVDAALHMIEEPEVDTSTLVRDHIQGPDFPTGGRILNTQDELAEIYETGSGTIEMRG 243 Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314 + +G ++ +PY V KS+++E+IA+ I + +P L ++RDES +DVRIVL Sbjct: 244 AYRT----KGKTRAIIESVPYGVDKSKIVEEIADHIAEENVPQLSNVRDESTDDVRIVLE 299 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVL-----SMGRVPQVMPLDGILKEWLAHRR 369 K R D + M +F + ++ RF +N+ L + + P+ + L IL+ +L R Sbjct: 300 LK-RGSDTEAAMAYLFKHTKLQKRFHVNLTCLVPTESTDVKAPKQVDLRTILRYFLDFRL 358 Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTEN 426 +V+ RR + ++ R+ IL+G + +DE I IIR N+ ++ RF L E Sbjct: 359 DVVTRRLQNELAELEARIHILEGFETIFDALDEAIEIIRASKNKADAAQRLMHRFQLDEE 418 Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486 Q DAIL +L L ++E I+ EL A E+I LL+ +W + E++++++ + Sbjct: 419 QTDAILETQLYKLSQMEIEAIRDELGEKRARAEEIRRLLDDEDARWGIVKDELQDIRDEY 478 Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546 + RR+T AD ++ I E + V+++ GW++ ++S DL A+ + Sbjct: 479 TDE-----RRSTLVG-PEADMEYTEEDYIVDEDVHVIVTRDGWVKRQGTYS-DLDAIRTR 531 Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606 +GD + AL T + + G YT + S G+G+ +Q L + + +V Sbjct: 532 DGDEVGWALAGSTRATVGFFTNYGTCYTTRITEIPSTTGYGDPVQKLFSFDDGEHVVGVV 591 Query: 607 VYD 609 +D Sbjct: 592 SFD 594 >gi|302878364|ref|YP_003846928.1| DNA gyrase, A subunit [Gallionella capsiferriformans ES-2] gi|302581153|gb|ADL55164.1| DNA gyrase, A subunit [Gallionella capsiferriformans ES-2] Length = 879 Score = 399 bits (1025), Expect = e-109, Method: Compositional matrix adjust. Identities = 255/730 (34%), Positives = 392/730 (53%), Gaps = 76/730 (10%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 VSL + + YL YA+S I RA+PD+RDG KPVHRR++ AM E+ D+ A+KKSARIV Sbjct: 11 VSLEEEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELSNDWNRAYKKSARIV 70 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG++DGD+AAA RYTE RM ++ Sbjct: 71 GDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAKI 130 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A +L +D++ VDF Y+ + EP+VFP++FPNLL NG+SGIAVGMAT+IP HN+ E+ Sbjct: 131 AHELLADLDKETVDFGPNYDGSEHEPLVFPARFPNLLVNGSSGIAVGMATNIPPHNMTEV 190 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 +A LAL+ NPE+ IE+L+EY+ PDFPT G I + E YR GRG +RAR E Sbjct: 191 IDACLALLKNPEMDIEELIEYVPAPDFPTAGFIY-GLAGVKEGYRTGRGRVIMRARCHFE 249 Query: 260 EVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318 ++G+G I++ E+PYQV K+ L+ KI E++ KR+ + +IRDES + + R Sbjct: 250 DIGKGERQAIIIDELPYQVNKANLLMKIGEMVREKRLEGISEIRDESDKSGMRAVIELKR 309 Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378 + D+L+ ++ + M+ F +NM + G+ P+++ L ++ +L HRREV+ RR+ F Sbjct: 310 GENADVLLNKLYKDTQMQDSFGINMVAIVDGQ-PRLLNLKQVMDAFLRHRREVVTRRTIF 368 Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV----------------MVSRFS 422 ++ R +L+GL +A N+DEIIA+I+ P M+SR S Sbjct: 369 ELRKARERGHVLEGLAVALSNVDEIIALIKAAPAPSDAKRELMAKSWRSELVEDMLSRVS 428 Query: 423 ------------------------LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458 L++ Q AIL LRL+ L +E+ +I E ++ + Sbjct: 429 DASRPDGLAPQFGLIVADNARFYHLSDAQAQAILELRLQRLTGMEQDKIIGEYREVMDKI 488 Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518 + +L ++ I E+ VK F +RR+ V+ +++ +I E Sbjct: 489 ADLLDILAKPERVTAIIGDELVAVKTQFGD-----KRRSEI--VTHTHDMSMED-LIPPE 540 Query: 519 PITVVISNRGWIRSLKSHSVDL--------SALHFKEGDSLKIALHAHTTDRILLLSTDG 570 + V +S+ G++++ K A K+ D + A+T + IL S G Sbjct: 541 DVVVTLSHGGYMKAQKMDDYQAQKRGGRGRQATRNKDDDFIDNLFVANTHNFILCFSNKG 600 Query: 571 -----KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI-----VTAFVYDSTCKLLVVSSK 620 K Y +P G S G+ I L+ L + I VT F D + ++ Sbjct: 601 RVYWMKVYDVPQG---SSGARGKPIVNLLPLEEGEKINAILPVTEFAEDKY--VFFATAN 655 Query: 621 GNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIP 679 G ++ ++G + + ++ + V G H V + + K + F + Sbjct: 656 GTVKKTTLTDFSRPMKRGIIAINLDEDDYLIGVAITDGHHDVMLFSNSGKAVRFDEADVR 715 Query: 680 EMSRG-KGVR 688 E R +GVR Sbjct: 716 ETGRASRGVR 725 >gi|254993565|ref|ZP_05275755.1| DNA gyrase subunit A [Listeria monocytogenes FSL J2-064] Length = 807 Score = 399 bits (1025), Expect = e-108, Method: Compositional matrix adjust. Identities = 218/542 (40%), Positives = 339/542 (62%), Gaps = 22/542 (4%) Query: 44 PDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQ 103 PD+RDG KPVHRRI++AM+++G+ A+KKSARIVGEVIGK HPHGD +VY ++VR+AQ Sbjct: 1 PDVRDGLKPVHRRILYAMNDLGMTSDKAYKKSARIVGEVIGKYHPHGDTAVYFTMVRMAQ 60 Query: 104 PFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDS 163 F R L+ G GNFG++DGD AAA RYTEARM++++ +L+ +++D +D+ D Y+ + Sbjct: 61 DFSYRNMLVDGHGNFGSVDGDMAAAMRYTEARMSKISMELLRDINKDTIDYADNYDGSER 120 Query: 164 EPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIG 223 EPV+ P++FPNLL NG+SGIAVGMAT+IP+H++ E+ + LAL +P+I+I L+EYI G Sbjct: 121 EPVILPARFPNLLVNGSSGIAVGMATNIPTHHLGEVIDGVLALSHDPDITIRDLMEYIPG 180 Query: 224 PDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLI 283 PDFPT G+I+ R I +Y GRG VR R +EE G IV+TEIPYQV K+RL+ Sbjct: 181 PDFPTAGMIM-GRSGIRRAYESGRGSITVRGRVDIEEKKNGKETIVITEIPYQVNKARLV 239 Query: 284 EKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNM 343 E+IAEL K+I + + DES ++ R + +++ ++F ++ ++T F +NM Sbjct: 240 ERIAELAREKKIDGITSLNDESDRSGMRIVIEVRRDISASVIVNNLFKMTALQTTFGINM 299 Query: 344 NVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEI 403 L + P+V+ L IL +L H++ V+ RR+ F ++ + R IL+GL IA NID I Sbjct: 300 LAL-VDNHPKVLNLKEILYHYLEHQKVVIRRRTEFELRKAEARAHILEGLRIALDNIDAI 358 Query: 404 IAIIR---NEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEK 460 I +IR D K ++++F+L++ Q AIL++RL+ L LE +I+ E NL+A Sbjct: 359 IKLIRGSKTSDVAKEGLMTQFNLSDKQAQAILDMRLQRLTGLEREKIEEEYQNLVALIND 418 Query: 461 IDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ-QAMIEKEP 519 + ++L ++ I E+ E+K ++ +RRT E+ D +L+ + +I +E Sbjct: 419 LKAILADDERILEIIREELEEIKVKYAD-----KRRT---EILAGDLVSLEDEDLIPEEE 470 Query: 520 ITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGK 571 + + ++ RG+I RS + + + E D ++ + T D +L + GK Sbjct: 471 VAITLTKRGYIKRLPLSTYRSQRRGGRGIQGMSTHEDDFVEHLVATSTHDTLLFFTNTGK 530 Query: 572 AY 573 Y Sbjct: 531 VY 532 >gi|198274607|ref|ZP_03207139.1| hypothetical protein BACPLE_00759 [Bacteroides plebeius DSM 17135] gi|198272054|gb|EDY96323.1| hypothetical protein BACPLE_00759 [Bacteroides plebeius DSM 17135] Length = 848 Score = 399 bits (1025), Expect = e-108, Method: Compositional matrix adjust. Identities = 261/763 (34%), Positives = 419/763 (54%), Gaps = 63/763 (8%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 ++ + +++ ++ Y+ Y++S I RA+PD+RDGFKPVHRRI++ M E+G +K Sbjct: 4 QDRIIKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMMELGNTSDKPYK 63 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 K+ARIVGEV+GK HPHGD SVY +LVR+AQ + RYPL+ GQGNFG+IDGDSAAA RYTE Sbjct: 64 KAARIVGEVLGKYHPHGDSSVYGALVRMAQDWAMRYPLVDGQGNFGSIDGDSAAAMRYTE 123 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 AR+ ++ E ++Q + ++ VDF + +++ EP V P++ PNLL NG SGIAVGMAT++P+ Sbjct: 124 ARLKKIGEEMMQDLYKETVDFTNNFDDTLQEPTVMPTRIPNLLVNGASGIAVGMATNMPT 183 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN++E+ +A +A IDN EI ++ L++YI PDFPTGG I + ++Y GRG +R Sbjct: 184 HNLREVIDACVAYIDNNEIDVDGLMQYIKAPDFPTGGYIY-GISGVRDAYETGRGRVVMR 242 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIV 312 A+ +E IVVTEIPY V K+ LI+ IA+L K+I + ++ DE+ E +RIV Sbjct: 243 AKAEIESHPTHDK-IVVTEIPYGVNKAELIKSIADLSNDKKIEGISNVNDETDREGMRIV 301 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 + K R + +++ ++ ++ ++T F +N L GR P+++ L ++K ++ HR EV+ Sbjct: 302 IDIK-RDANASVVLNKLYKMTMLQTSFGVNNVALVHGR-PRLLNLKELIKYFVEHRHEVV 359 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVD 429 RR+ + ++ R IL+GL+IA NIDE+I IIR P +++RF+L+E Q Sbjct: 360 IRRTRYDLRKAKERAHILEGLIIASDNIDEVIRIIRAAKTPNEAITNLMARFNLSEIQAR 419 Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489 AI+ +RLR L L + Q+ +E ++L+ + + +L++ + I E+ EVKE + + Sbjct: 420 AIVEMRLRQLTGLMQDQLHAEYEDLMKQIAYFEEILSNEELCKKVIKDELLEVKEKYGDN 479 Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLS 541 RR+ E+ A + + + + + IS+ G+I R+ V Sbjct: 480 -----RRS---EIVYASEEFNPEDFYADDEMVITISHMGYIKRTPLSEFRAQNRGGVGSK 531 Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL-----PAGNLLSGRGHGEAIQLLIDL 596 + D ++ A + +L + GK Y L P GN S G AIQ L+++ Sbjct: 532 GSETRNEDFIEHIYPATMHNTLLFFTQKGKCYWLKVYEIPEGNKTS---KGRAIQNLLNI 588 Query: 597 NHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG---KTFLKVSSEEKMKLV 653 + D+VTA+ L V + + + ++ T+ G KT L+ S + V Sbjct: 589 EAD-DVVTAY--------LRVKNLNDTEFINSHYVLFCTKNGVIKKTLLEQYSRPRQNGV 639 Query: 654 VKVT---------------GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGI 697 +T + + + N + + F + EM R GVR + + G Sbjct: 640 NAITIREDDRVIEVRMTNGNNEIVIANRNGRAIRFHESAVREMGRTATGVRGITLDEDGQ 699 Query: 698 SDV---ICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVG 737 +V IC K E T + + Y + + RGG G Sbjct: 700 DEVIGMICIKDPETETIMVVSENGYGKRSDIEDYRKTNRGGKG 742 >gi|93006548|ref|YP_580985.1| DNA gyrase, A subunit [Psychrobacter cryohalolentis K5] gi|92394226|gb|ABE75501.1| DNA gyrase subunit A [Psychrobacter cryohalolentis K5] Length = 928 Score = 399 bits (1025), Expect = e-108, Method: Compositional matrix adjust. Identities = 234/651 (35%), Positives = 368/651 (56%), Gaps = 69/651 (10%) Query: 13 VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72 + E+V +++ L++ YL YA+S I RA+PD+RDGFKPVHRR+++AM + D+ A+ Sbjct: 1 MSESVSPIAIVDELKQSYLDYAMSVIVSRALPDVRDGFKPVHRRVMYAMHVLSNDYNKAY 60 Query: 73 KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132 KKSAR+VG+VIGK HPHGD +VYD++VR+AQ F RYP++ GQGNFG+ID D AA RYT Sbjct: 61 KKSARVVGDVIGKYHPHGDSAVYDAIVRMAQDFSLRYPMVDGQGNFGSIDDDPPAAMRYT 120 Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192 E RMT++ +L +D+D VD+ D Y+ + P V P++ PNLL NG +GIAVGMAT++ Sbjct: 121 EVRMTKLTHQMLADLDKDTVDWEDNYDGSERMPSVLPARIPNLLINGATGIAVGMATNMA 180 Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252 HN+ E+ A LA +NP+IS E+L+ +I GPDFPTGGII R I+++YR G+G V Sbjct: 181 PHNLTEVINACLAYAENPQISAEELMSHISGPDFPTGGIIY-GRAGILDAYRTGKGRLHV 239 Query: 253 RARWCVEE-----VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307 R R+ +E V R IV TE+PYQ K++LIE+IAEL+ K+I + +IRDES + Sbjct: 240 RGRYIIEPMSETGVNRDRERIVFTEVPYQTNKAKLIERIAELVRDKKIEGITEIRDESDK 299 Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367 D + R ++++ ++F+ + +E+ F +NM L G+ P+++ L ++ ++ H Sbjct: 300 DGMRIAIDLRRGETAEVIVNNLFLQTPLESSFSINMVALDNGQ-PKLLTLRQLIAAFVRH 358 Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR------------------- 408 R+EV+ RR+ F + R +L+GL +A NIDEIIA I+ Sbjct: 359 RQEVVTRRTIFELNKARVRGHLLEGLTVALANIDEIIATIKASANRGLARENLLSNTWGS 418 Query: 409 ---------------------NEDKPKPVMV----SRFSLTENQVDAILNLRLRSLRKLE 443 ED P + + L+ QV+AIL+++L L LE Sbjct: 419 GSVVAMLTAAGSQSVRPDFIEGEDPKAPFGLINNQESYRLSLEQVNAILDMQLHRLTGLE 478 Query: 444 EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVS 503 + ++ E +LL E ++S+L + I+ E+ E+++ F RRT + S Sbjct: 479 QDKLTEEYQDLLREIAHLESILGDFDKLMTIISNEMIEIRDNFGDE-----RRTDIID-S 532 Query: 504 RADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIAL 555 R D ++ +I ++ + + +S G+ ++ K SA KE D + + Sbjct: 533 RMDFN--REDLIPEQTVVMTVSRTGYAKTQPIDDYVAQKRGGKGKSATAMKEDDVIDHLI 590 Query: 556 HAHTTDRILLLSTDGKAYTLPAGNL-LSGRG-HGEAIQLLIDLNHNQDIVT 604 T +L + G+ ++L + ++ RG G + LI LN ++ + T Sbjct: 591 VTSTHATVLCFTDTGRVFSLRGFEVPIASRGARGRPLVNLIGLNADETVTT 641 >gi|330444524|ref|YP_004377510.1| DNA gyrase subunit A [Chlamydophila pecorum E58] gi|328807634|gb|AEB41807.1| DNA gyrase, A subunit [Chlamydophila pecorum E58] Length = 829 Score = 399 bits (1025), Expect = e-108, Method: Compositional matrix adjust. Identities = 259/723 (35%), Positives = 396/723 (54%), Gaps = 60/723 (8%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 EE + +L ++E YL Y++S I RA+PD+RDG KP RRI++AM ++ L GA + Sbjct: 5 EEIIVPKNLEEEMKESYLRYSMSVIISRALPDIRDGLKPSQRRILYAMRQLSLTPGAKHR 64 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 K A+I G+ G HPHG+ +Y +LVR+AQP+ RYPL+ GQGNFG++DGD AAA RYTE Sbjct: 65 KCAKICGDTSGDYHPHGESVIYPTLVRMAQPWAMRYPLVDGQGNFGSLDGDPAAAMRYTE 124 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 AR+T A +++ +D+D VD Y+E EP VFP+KFPNLL NG+SGIAVGMAT+IP Sbjct: 125 ARLTHSAIFLMEDLDKDTVDMVSNYDETKHEPTVFPAKFPNLLCNGSSGIAVGMATNIPP 184 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E+ EA L L+ NP SIE+++E + GPDFPTGGII E I +Y GRG +VR Sbjct: 185 HNLGELIEATLLLLSNPTASIEEIMEVMPGPDFPTGGIIC-GHEGICSTYHTGRGKIKVR 243 Query: 254 ARWCVEE-VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRI 311 AR VEE + IV+TEIPY V KSRLIE+IA+L+ K + + D+RDES E VR+ Sbjct: 244 ARLHVEENTEKHRESIVITEIPYNVNKSRLIEQIADLVNDKTLSGISDVRDESDKEGVRV 303 Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371 VL K + ++++ ++ +D++T F NM L +P+ M + ++ W+ HR EV Sbjct: 304 VLELK-KGESSEVMINRLYKFTDVQTTFGANMLALDKN-LPRTMNIHRMISAWIRHRAEV 361 Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQV 428 L RR+ F + + R IL+G L A +D ++ I++ D K ++ + T+ Q Sbjct: 362 LRRRTRFELNKAETRAHILEGYLKALSCLDAVVKTIQDSDSKEHAKQQIIELYGFTDAQA 421 Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488 AIL LRL L LE + + E D LL + +L + + I E++++ + + K Sbjct: 422 VAILELRLYQLTGLEAEKTRKEYDELLDKIAYYKRVLADEELVKDIIRTELQDLVK-YHK 480 Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK----------SHSV 538 + R T E AD + +I E + + IS +++ + H V Sbjct: 481 TP-----RKTTIEFD-ADDVRDIEDIITDESVIITISGDDYVKRMPIKVFREQRRGGHGV 534 Query: 539 DLSALHFKEG-DSLKIALHAHTTDRILLLSTDGKAY-----TLPAG----------NLLS 582 S K+G D LK A T D +L+ + G+ Y LP G N L Sbjct: 535 --SGFDMKKGSDFLKAVYSASTKDYLLIFTNFGQCYWIKVWRLPEGERRSKGKSLINFLE 592 Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR-KGKTF 641 G GE + ++++ ++ F++ +T + +V +AF +N R KG Sbjct: 593 GIRPGEQVAAILNVKSFEN--ADFLFLATKQGVVKKVPLDAF--------SNPRKKGIRA 642 Query: 642 LKVSSEEKMKLVVKVTGDH--VAVVGENRKLLIFSIDQIPEMSRG----KGVRLQSYKDG 695 L++ +++ + +H V + + + F D++ M R +GV L++ +D Sbjct: 643 LEIDDNDELIAACHIENEHDRVMLFTKLGMAVRFPHDKVRPMGRAARGVRGVSLKNQEDC 702 Query: 696 GIS 698 +S Sbjct: 703 VVS 705 >gi|227523344|ref|ZP_03953393.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus hilgardii ATCC 8290] gi|227089450|gb|EEI24762.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus hilgardii ATCC 8290] Length = 850 Score = 399 bits (1025), Expect = e-108, Method: Compositional matrix adjust. Identities = 224/570 (39%), Positives = 344/570 (60%), Gaps = 20/570 (3%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + V L + +L YA+S I RA+PD+RDG KPVHRRI++ M+E+G+ +KKSA Sbjct: 20 ITNVDLSKKMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYDMNELGVTPDKPYKKSA 79 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 RIVG+V+GK HPHGD +VY+S+VR+AQ F RY L++G GNFG++DGD AAA RYTEAR+ Sbjct: 80 RIVGDVLGKYHPHGDTAVYESMVRMAQTFSYRYMLVNGHGNFGSVDGDGAAAMRYTEARL 139 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 +++A +L+ ++++ +DF Y+ + EP V PS+FPNLL NG SGIAVGMAT+IP HN+ Sbjct: 140 SKIAMEMLRDINKNTIDFVPNYDGTEREPSVLPSRFPNLLVNGASGIAVGMATNIPPHNL 199 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ A L+DNP+ + L+E + GPDFPTGG+++ + I ++Y GRG +RA+ Sbjct: 200 SEVISAIHVLMDNPDATTADLMEVLPGPDFPTGGVVM-GKSGIRKAYETGRGSIILRAKV 258 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316 +E G I+ TE+PY V K++LIE+IAEL KRI + DI DES + V+ Sbjct: 259 EIEGEASGKQRIIATELPYMVNKAKLIERIAELARDKRIEGITDINDESDREGMRVVIDV 318 Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376 R ++++ +++ L+ M+T F NM + G P+++ L IL+ +L H+ EV+ RR+ Sbjct: 319 RRDASAEVILNNLYKLTLMQTSFSFNMLAIVKG-TPRILSLKEILQYYLEHQVEVITRRT 377 Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAILN 433 + +Q R IL+GL IA +IDEII IIR K +++ F L++ Q AIL+ Sbjct: 378 KYELQKAQARAHILEGLRIALDHIDEIIKIIRGSQTGEVAKNQLITGFGLSDKQAQAILD 437 Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493 +RL L LE +I E + L+ + E ++L+S + + NQI E E+ EI K D Sbjct: 438 MRLVRLTGLEREKIDKEYNQLMKDIEDFKAILSS-RDRVNQIIYE--ELLEIQKKFGDER 494 Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD--------LSALHF 545 R EV + + +IE+E + V +++ G+I+ L + + + Sbjct: 495 RTELLVGEV----LSLEDEDLIEEEDVIVSLTHNGYIKRLPTTEFKAQNRGGRGVQGMGV 550 Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTL 575 + D ++ + T D +L + GK Y + Sbjct: 551 HDDDFVEQLVSTSTHDVLLFFTDAGKVYRM 580 >gi|255693872|ref|ZP_05417547.1| DNA gyrase, A subunit [Bacteroides finegoldii DSM 17565] gi|260620314|gb|EEX43185.1| DNA gyrase, A subunit [Bacteroides finegoldii DSM 17565] Length = 859 Score = 399 bits (1025), Expect = e-108, Method: Compositional matrix adjust. Identities = 261/777 (33%), Positives = 420/777 (54%), Gaps = 57/777 (7%) Query: 12 LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71 L ++ + +++ ++ Y+ Y++S I RA+PD+RDGFKPVHRRI++ M E+G Sbjct: 2 LEQDRIIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILYGMMELGNTSDKP 61 Query: 72 FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131 +KKSARIVGEV+GK HPHGD SVY ++VR+AQ + RYPL+ GQGNFG++DGDS AA RY Sbjct: 62 YKKSARIVGEVLGKYHPHGDSSVYLAMVRMAQEWAMRYPLVDGQGNFGSVDGDSPAAMRY 121 Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191 TEAR+ ++ E ++ + ++ VDF ++ EP V P++ PNLL NG SGIAVGMAT++ Sbjct: 122 TEARLNKLGEAMMDDLYKETVDFEPNFDNTLVEPKVMPTRIPNLLVNGASGIAVGMATNM 181 Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251 P HN+ E+ +A A IDNPEI++E+L+E++ PDFPTGG I + E+Y GRG Sbjct: 182 PPHNLSEVIDACDAYIDNPEITVEELMEFVKAPDFPTGGYIY-GVSGVREAYLTGRGRVV 240 Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VR 310 +RAR +E G+ IV+TEIPY V K+ LI+ IA+L+ K+I + + DES D +R Sbjct: 241 MRARAEIES-GQAHDKIVITEIPYNVNKAELIKYIADLVNDKKIEGISNANDESDRDGMR 299 Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370 IV+ K R + +++ ++ ++ ++T F +N L GR P+ + L ++K ++ HRRE Sbjct: 300 IVIDVK-RDANASVVLNKLYKMTALQTSFGVNNVALIHGR-PKTLNLRDLIKYFIEHRRE 357 Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQ 427 V+ RR+ F ++ R IL+GL+IA NIDE+I IIR P ++ RF+LTE Q Sbjct: 358 VVIRRTQFELRKAKERAHILEGLIIASDNIDEVIRIIRAAKTPNDAIAGLIERFNLTEIQ 417 Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487 AI+ +RLR L L + Q+ +E + ++ + ++S+L + + E+ EVK + Sbjct: 418 SRAIVEMRLRQLTGLMQDQLHAEYEEIMKQIAYLESILADDEVCRKVMKDELLEVKAKYG 477 Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVD 539 RR+ E+ + + + + + + IS+ G+I R+ V Sbjct: 478 DE-----RRS---EIVYSSEEFNPEDFYADDQMIITISHMGYIKRTPLTEFRAQNRGGVG 529 Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLN 597 ++ D ++ A + ++ + GK Y L + G G AIQ L++++ Sbjct: 530 SKGTETRDEDFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTKNSKGRAIQNLLNID 589 Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG---KTFLKVSSEEKMKLVV 654 + D VTA+ L V S ++ + ++ T+KG KT L+ S + V Sbjct: 590 SD-DNVTAY--------LRVKSLEDSEFINSHYVLFCTKKGVIKKTLLEQYSRPRQNGVN 640 Query: 655 KVT---------------GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGIS 698 +T + + + N + + F + M R GVR + + G Sbjct: 641 AITIREDDSVIEVRMTNGNNEIIIANRNGRAIRFHEAAVRVMGRTATGVRGITLDNDGQD 700 Query: 699 DV---ICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752 +V IC K E + + + + Y + RGG G ++GK ++ Sbjct: 701 EVVGMICIKDLETESVMVVSEQGYGKRSEIEDYRKTNRGGKGVKTMNITEKTGKLVT 757 >gi|160875516|ref|YP_001554832.1| DNA gyrase subunit A [Shewanella baltica OS195] gi|160861038|gb|ABX49572.1| DNA gyrase, A subunit [Shewanella baltica OS195] gi|315267703|gb|ADT94556.1| DNA gyrase, A subunit [Shewanella baltica OS678] Length = 916 Score = 399 bits (1025), Expect = e-108, Method: Compositional matrix adjust. Identities = 234/605 (38%), Positives = 349/605 (57%), Gaps = 55/605 (9%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 ++ +++ L+ YL YA+S I RA+PD+RDG KPVHRR++ AMSE+ D+ +KKS Sbjct: 7 SISPINIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELKNDWNKPYKKS 66 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 AR+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG++DGDSAAA RYTE R Sbjct: 67 ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYTLVDGQGNFGSVDGDSAAAMRYTEIR 126 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 M ++A +L ++++ VDF Y+ + P V P++ PNLL NG+SGIAVGMAT+IP HN Sbjct: 127 MDKLAHQLLADLEKETVDFVPNYDGTELIPAVLPTRVPNLLINGSSGIAVGMATNIPPHN 186 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 + E+ + LALI+ P +SIE+L+EYI GPDFPT II R+ I+++Y+ GRG +RA Sbjct: 187 LTEVVKGCLALIEEPSLSIEQLMEYIPGPDFPTAAII-NGRKGIIDAYKTGRGRAIMRAL 245 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315 VE G I+VTEIPYQV K+RLIEKIAEL+ K++ + +RDES +D ++ Sbjct: 246 ADVETEDNGRERIIVTEIPYQVNKARLIEKIAELVKDKKLEGISGLRDESDKDGMRIVIE 305 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 R ++++ +++ + M+ F +NM L+ G+ P++ L +L+ ++ HRREV+ RR Sbjct: 306 IKRGEVGEVVLNNLYAQTQMQCSFGINMVALTNGQ-PKLFNLKEMLECFILHRREVVTRR 364 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV----------------- 418 + F ++ R IL+ L +A NID IIA+I+ P V Sbjct: 365 TVFELRKARERAHILEALAVALANIDPIIALIKASPTPADAKVKLVEQGWELGHVQGMLE 424 Query: 419 --------------------SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458 ++ LTE Q AIL LRL L LE +I +E + LL Sbjct: 425 KAGDDAARPEWLEPQYGIRDGQYFLTEQQAQAILELRLHRLTGLEHDKIIAEYEELLEFI 484 Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518 + +L S ++ I E+ ++ E + G R T + D + + +I +E Sbjct: 485 AGLLFILRSPERLMEVIKEELVQILEEY------GDARRTVINANEVDMSL--EDLINEE 536 Query: 519 PITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570 + V +S+ G+ + + + +A K+ D ++ L A+T D IL S G Sbjct: 537 DVVVTLSHLGYAKYQPLTDYQAQRRGGKGKAATKVKDEDFVEKLLVANTHDTILCFSDFG 596 Query: 571 KAYTL 575 K Y L Sbjct: 597 KMYWL 601 >gi|220924060|ref|YP_002499362.1| DNA gyrase subunit A [Methylobacterium nodulans ORS 2060] gi|219948667|gb|ACL59059.1| DNA gyrase, A subunit [Methylobacterium nodulans ORS 2060] Length = 911 Score = 399 bits (1024), Expect = e-108, Method: Compositional matrix adjust. Identities = 249/699 (35%), Positives = 383/699 (54%), Gaps = 75/699 (10%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 ++K VS+ + YL YA+S I RA+PD RDG KPVHRRI+++M E G + KS Sbjct: 18 DIKPVSITDEMRRSYLDYAMSVIVSRALPDARDGLKPVHRRILYSMYENGYLPDRKYVKS 77 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 ARIVG+V+G+ HPHGDQS+YD+LVR+AQ F R L+ GQGNFG+IDGD AA RYTE+R Sbjct: 78 ARIVGDVMGQYHPHGDQSIYDALVRMAQDFAMRIMLVDGQGNFGSIDGDPPAAMRYTESR 137 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 + + A +L+ +D++ VDF Y+E EP V P++FPNLL NG GIAVGMAT+IP HN Sbjct: 138 LAKPAMALLEDIDKNTVDFNPNYDESKDEPAVLPARFPNLLVNGAGGIAVGMATNIPPHN 197 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 + E+ + +ALID+P ++IE L E I GPDFPTGG+I+ R +Y GRG +RA+ Sbjct: 198 LGEVIDGCVALIDDPSLTIEALNEIIPGPDFPTGGLIL-GRAGTRAAYMTGRGSVVMRAK 256 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314 VEE+ + +V TEIPYQV K+ L+EKIA+L+ KRI + D+RDES D +RIV+ Sbjct: 257 SHVEEIRKEREALVFTEIPYQVNKASLVEKIADLVREKRIEGVADLRDESDRDGMRIVVE 316 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K ++ D+++ ++ + ++T F NM L+ GR P+++ L +++ ++ R EV+ R Sbjct: 317 LKRDAM-ADVVLNQLYRYTPLQTSFGCNMVALNGGR-PELLNLKDLIQAFIDFREEVVSR 374 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----------- 420 R+ F ++ R +L GL IA NIDE+I +IR P + ++SR Sbjct: 375 RTKFLLRKARERAHVLCGLAIAVANIDEVIRLIRTSPDPNSAREALMSRDWPAADIAPLI 434 Query: 421 ---------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLL 465 + L+E Q AIL+LRL+ L L ++ EL L E +L Sbjct: 435 ALVDDPRHRVADDGTYRLSEAQARAILDLRLQRLTALGRDEVGDELKQLADEIADYLDIL 494 Query: 466 NSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVIS 525 S + + E+ EV+ ++ R+T E+ D + +I++E + V +S Sbjct: 495 RSRARILGIVKAELAEVRAEYATP-----RKT---EIQDWDSNVEDEDLIQREDMVVTVS 546 Query: 526 NRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT--- 574 + G+I R+ + S + ++ D + A+T +L S+ G+AY Sbjct: 547 HAGYIKRVPLSTYRAQRRGGKGRSGMTTRDEDFVTRLFVANTHTPVLFFSSQGQAYKEKV 606 Query: 575 --LPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV-------YDSTCKLLVVSSKGNAFI 625 LP L + G+A+ ++ L+ + +T + T ++ ++ GN Sbjct: 607 WRLP---LAAPNARGKALVNILPLDQAGERITTIMPLPEDEASWETLDVMFATASGNVRR 663 Query: 626 VEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVV 664 + S+ + R GK +K+ GDH+ V Sbjct: 664 NKLSDFVQVNRNGKIAMKLDE-----------GDHIVHV 691 >gi|237743165|ref|ZP_04573646.1| DNA gyrase subunit A [Fusobacterium sp. 7_1] gi|229433461|gb|EEO43673.1| DNA gyrase subunit A [Fusobacterium sp. 7_1] Length = 431 Score = 399 bits (1024), Expect = e-108, Method: Compositional matrix adjust. Identities = 202/432 (46%), Positives = 295/432 (68%), Gaps = 7/432 (1%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 NV + L+E YL Y++S I RA+PD+RDG KPVHRRI+ AM+EMG+ FKKS Sbjct: 3 NVDNRYIEEELKESYLDYSMSVIVSRALPDVRDGLKPVHRRILFAMNEMGMTNDKPFKKS 62 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 ARIVGEV+GK HPHGD +VY ++VR+AQ F RY L+ G GNFG+IDGDSAAA RYTEAR Sbjct: 63 ARIVGEVLGKYHPHGDSAVYGTMVRMAQDFNYRYLLVEGHGNFGSIDGDSAAAMRYTEAR 122 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 M ++ +L+ +D++ +D+R +++ EP V P+K PNLL NG GIAVGMAT+IP HN Sbjct: 123 MEKITAELLEDIDKNTIDWRKNFDDSLDEPTVLPAKLPNLLLNGAIGIAVGMATNIPPHN 182 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 + E+ + LA+IDN +I I +L+ YI GPDFPTG II + R I+E+Y+ GRG +VR + Sbjct: 183 LGELVDGILAIIDNKDIEILELMNYIKGPDFPTGAII-DGRAGIIEAYKTGRGKIKVRGK 241 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLF 314 +EE+ G I+V+EIPYQ+ K+ LIEKIA L+ K+I + D+RDES E +RI++ Sbjct: 242 VDIEELKNGKSNIIVSEIPYQLNKANLIEKIANLVKEKKITEISDLRDESNREGIRILIE 301 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K + +P+L++ ++ +D++T F + M L + VP+V+ L +L E++ HR +V+ R Sbjct: 302 VK-KGEEPELVLNKLYKYTDLQTTFGVIMLSL-VNNVPRVLNLKEMLNEYIKHRFDVITR 359 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAI 431 R++F + ++R ILKG IA NID II +IR + ++ +++ T+ Q +I Sbjct: 360 RTAFDLDKAEKRAHILKGYQIALENIDRIIELIRASSDGTVAREQLIEKYAFTDIQARSI 419 Query: 432 LNLRLRSLRKLE 443 L+++L+ L LE Sbjct: 420 LDMKLQRLTGLE 431 >gi|160932415|ref|ZP_02079805.1| hypothetical protein CLOLEP_01250 [Clostridium leptum DSM 753] gi|156868374|gb|EDO61746.1| hypothetical protein CLOLEP_01250 [Clostridium leptum DSM 753] Length = 859 Score = 399 bits (1024), Expect = e-108, Method: Compositional matrix adjust. Identities = 227/602 (37%), Positives = 347/602 (57%), Gaps = 41/602 (6%) Query: 3 VDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62 + N+ N NV V ++ +++ +L Y++S I RA+PD+RDG KPVHRRI+++ Sbjct: 12 IKNMDEKNMEPRSNVIEVDIQKEMQKSFLDYSMSVIVSRALPDVRDGLKPVHRRILYSQY 71 Query: 63 EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122 E GL A+KK A VG V+G+ HPHGD SVYD+LVRLAQ F YPL+ G GNFG++D Sbjct: 72 EDGLTPDKAYKKCATTVGNVLGRYHPHGDASVYDALVRLAQDFSMHYPLVDGHGNFGSVD 131 Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182 GD AAYRYTEARM++++ +L +D+D V+F Y++ EP V PS+FPNLL NG++G Sbjct: 132 GDPPAAYRYTEARMSKISTEMLTDIDKDTVNFISNYDDSRKEPEVLPSRFPNLLVNGSTG 191 Query: 183 IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242 IAVGMAT+IP HN+ E +A LIDNP+ +E L+EYI GPDFPTG +I+ R I + Sbjct: 192 IAVGMATNIPPHNLGETIDAVCYLIDNPDAGLEDLMEYIKGPDFPTGAMIM-GRAGIRAA 250 Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302 Y GRG VRA + E G + I+VTE+PYQV K+RLIE IA+++ KRI + +I Sbjct: 251 YATGRGKITVRAVAEIVEEKNGRFKIIVTELPYQVNKARLIESIADMVKDKRIEGISNID 310 Query: 303 DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362 D S + + R P +++ ++ + M+T F + M + G P+ + L +L+ Sbjct: 311 DHSDRNGMHIEIDLKRDASPQIVLNQLYSYTQMQTTFGVIMLAIVNGE-PKTLTLKEMLQ 369 Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN-EDKP--KPVMVS 419 E++ + EV+ RR+ + ++ R IL+GL IA NIDEII+IIRN +D+P K M Sbjct: 370 EYIKFQEEVITRRTIYDLKKARERAHILEGLKIALDNIDEIISIIRNSKDRPTAKSRMTE 429 Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSEL----------DNLLAEKEKIDSLLNSGK 469 RF L + Q +AI+ +RL L LE +I+ EL +++LA +E++ +++ Sbjct: 430 RFGLDDVQTEAIVQMRLGQLTGLERQKIEDELAALELKIKDYEDILAHEERVKAIVKD-- 487 Query: 470 QQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW 529 E+ I +K D R+T VS + +I +E + ++N G+ Sbjct: 488 -----------ELMGIRNKYAD--ERKTEIMAVS---GEVDIEDLIPQEECVLTLTNFGY 531 Query: 530 IRSLKSHSV--------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL 581 ++ K + +S + +E D ++ D ++ ++ G+ Y L + Sbjct: 532 VKRQKMDTYRTQRRGGRGISGMSRREEDVATEMFVINSHDYVMFFTSTGRVYRLKCYEIP 591 Query: 582 SG 583 G Sbjct: 592 EG 593 >gi|71066098|ref|YP_264825.1| DNA gyrase subunit A [Psychrobacter arcticus 273-4] gi|71039083|gb|AAZ19391.1| DNA gyrase subunit A [Psychrobacter arcticus 273-4] Length = 930 Score = 399 bits (1024), Expect = e-108, Method: Compositional matrix adjust. Identities = 233/651 (35%), Positives = 370/651 (56%), Gaps = 69/651 (10%) Query: 13 VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72 + E+V +++ L++ YL YA+S I RA+PD+RDGFKPVHRR+++AM + D+ A+ Sbjct: 1 MSESVSPIAIVDELKQSYLDYAMSVIVSRALPDVRDGFKPVHRRVMYAMHVLSNDYNKAY 60 Query: 73 KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132 KKSAR+VG+VIGK HPHGD +VYD++VR+AQ F RYP++ GQGNFG+ID D AA RYT Sbjct: 61 KKSARVVGDVIGKYHPHGDSAVYDAIVRMAQDFSLRYPMVDGQGNFGSIDDDPPAAMRYT 120 Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192 E RMT++ +L +D+D VD+ D Y+ + P V P++ PNLL NG +GIAVGMAT++ Sbjct: 121 EVRMTKLTHQMLADLDKDTVDWEDNYDGSERMPSVLPARIPNLLINGATGIAVGMATNMA 180 Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252 HN+ E+ A LA +NP+IS E+L+ +I+GPDFPTGGII R I+++YR G+G V Sbjct: 181 PHNLTEVINACLAYAENPQISAEELMSHILGPDFPTGGIIY-GRAGILDAYRTGKGRLHV 239 Query: 253 RARWCVEE-----VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307 R R+ +E V R IV TE+PYQ K++LIE+IAEL+ K+I + +IRDES + Sbjct: 240 RGRYIIEPMSETGVNRDRERIVFTEVPYQTNKAKLIERIAELVRDKKIEGISEIRDESDK 299 Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367 D + R ++++ ++F+ + +E+ F +NM L G+ P+++ L ++ ++ H Sbjct: 300 DGMRIAIDLRRGETAEVIVNNLFLQTPLESSFSINMVALDNGQ-PKLLTLRQLIAAFVRH 358 Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR------------------- 408 R+EV+ RR+ F + R +L+GL +A NIDEIIA I+ Sbjct: 359 RQEVVTRRTIFELNKARVRGHLLEGLTVALANIDEIIATIKASANRGLARENLLSNIWGS 418 Query: 409 ---------------------NEDKPKPVMV----SRFSLTENQVDAILNLRLRSLRKLE 443 ED P + + + L+ QV+AIL+++L L LE Sbjct: 419 GSVVAMLTAAGSQSVRPDFIEGEDPKAPFGLIDNQASYRLSLEQVNAILDMQLHRLTGLE 478 Query: 444 EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVS 503 + ++ E +LL E ++S+L + I+ E+ E+++ F RRT + S Sbjct: 479 QDKLTEEYQDLLREIAHLESILGDFDKLMTIISNEMIEIRDNFGDE-----RRTDIID-S 532 Query: 504 RADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIAL 555 R D ++ +I ++ + + +S G+ ++ K SA KE D + + Sbjct: 533 RMDFN--REDLIPEQTVVMTVSRTGYAKTQPIDDYVAQKRGGKGKSATAMKEDDVIDHLV 590 Query: 556 HAHTTDRILLLSTDGKAYTLPAGNL-LSGRG-HGEAIQLLIDLNHNQDIVT 604 T +L + G+ ++L + ++ RG G + LI L+ ++ + T Sbjct: 591 VTSTHATVLCFTDTGRVFSLRGFEVPIASRGARGRPLVNLIGLHADETVTT 641 >gi|315224035|ref|ZP_07865876.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Capnocytophaga ochracea F0287] gi|314946006|gb|EFS98014.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Capnocytophaga ochracea F0287] Length = 839 Score = 399 bits (1024), Expect = e-108, Method: Compositional matrix adjust. Identities = 235/633 (37%), Positives = 374/633 (59%), Gaps = 42/633 (6%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 E + V + ++ Y+ Y++S I RA+PD+RDG KPVHRR+++ M +MG+ +KK Sbjct: 5 EKLIPVDISDEMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMYDMGVLSNRPYKK 64 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 SA IVGEV+GK HPHGD +VYD++VR+AQ + RY L+ GQGNFG++ GD AA RYTEA Sbjct: 65 SAAIVGEVLGKYHPHGDTAVYDTMVRMAQYWSLRYMLVDGQGNFGSMGGDPPAAMRYTEA 124 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 RM + +E +L +D++ VD + TY++ EP+V P++ PNLL NG++GIAVGMAT++ H Sbjct: 125 RMRKFSEEMLSDIDKETVDHQLTYDDSREEPIVLPTRIPNLLVNGSAGIAVGMATNMAPH 184 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 N+ E+ + +A IDN +I I++L++YI PDFPTGGII E + E+++ GRG +RA Sbjct: 185 NLNEVIDGTIAYIDNNDIEIDELIKYIKAPDFPTGGIIY-GYEGVKEAFKTGRGRVIIRA 243 Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE-DVRIVL 313 + +E+ +G CIVVTE+PYQV S L++K ++L+ R+ + D+RDESA +RIV Sbjct: 244 KAEFQEI-KGKDCIVVTEVPYQVDTSVLLKKTSDLVKEGRLEGITDVRDESARGKIRIVY 302 Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373 K R P++++ ++F ++++T F +N L GR PQ++ L ++ ++ HR +V++ Sbjct: 303 ILK-RDAVPNVVLNNLFKHTELQTSFSVNNIALVKGR-PQLLNLKDLIFHFVEHRYDVVY 360 Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEI---IAIIRNEDKPKPVMVSRFSLTENQVDA 430 RR+ + ++ R+ IL+G + D + I IIR DKPK +++ F LT+ Q +A Sbjct: 361 RRTDYELRKAKERIHILEGYMKVMATEDTMGKAIEIIRFHDKPKEDLIAEFDLTDVQAEA 420 Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490 IL L LR + K+ Q K E + LAE ++ +L +++ I E+ E+KE + Sbjct: 421 ILALALRRINKVLIQQTKEEYEEKLAEIRDLEDILARKERRTEIIKEELLEIKEKY---- 476 Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR-----SLKSHS---VDLSA 542 G R + E + + + + MI + + + IS+ G+I+ K+ S V A Sbjct: 477 --GDERRSTIEYAGGEFSV--EDMIPDDKMVITISHAGYIKRTQLSEYKTQSRGGVGQKA 532 Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKA-----YTLPAGNLLSGRGHGEAIQLLIDLN 597 ++ D L+ + +L + GK Y +P G S G AIQ LI++ Sbjct: 533 STTRDQDFLEHLFVSSNHQYLLFFTQKGKCFWMRVYEIPEG---SKTAKGRAIQNLINI- 588 Query: 598 HNQDIVTAFV---------YDSTCKLLVVSSKG 621 + D + AFV Y S L++ + KG Sbjct: 589 ESDDKIKAFVSVQNLKDEDYISNNYLIMATKKG 621 >gi|332654826|ref|ZP_08420568.1| DNA gyrase, A subunit [Ruminococcaceae bacterium D16] gi|332516169|gb|EGJ45777.1| DNA gyrase, A subunit [Ruminococcaceae bacterium D16] Length = 852 Score = 399 bits (1024), Expect = e-108, Method: Compositional matrix adjust. Identities = 262/753 (34%), Positives = 404/753 (53%), Gaps = 56/753 (7%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 +K L +E+ Y+ YA+S I RA+PD+RDG KPVHRRI++AM E GL FKKSA Sbjct: 19 IKTAPLVKEMEDSYIEYAMSVIVGRALPDVRDGLKPVHRRILYAMYEDGLTSDKPFKKSA 78 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 VG+V+G+ HPHGDQSVYD+LVRL Q F RY L+ G GNFG+IDGD AAYRYTEARM Sbjct: 79 TCVGDVLGRYHPHGDQSVYDALVRLGQDFSMRYVLVDGHGNFGSIDGDPPAAYRYTEARM 138 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 ++++ +L+ ++++ VD+ ++E EP V PS+FPNLL NG+SGIAVGMAT+IP HN+ Sbjct: 139 SKLSNEMLRDIEKETVDWDPNFDESRKEPRVLPSRFPNLLVNGSSGIAVGMATNIPPHNL 198 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ A + ++DN +++ L+E+I GPDFPT G+I+ R I +Y G+G RVRAR Sbjct: 199 TEVINAVICVLDNENATLDDLMEHIQGPDFPTKGMIM-GRSGIRAAYATGKGHIRVRART 257 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316 EE G+ I+VTEIPYQV K LI+ +A+ + KR+ + DIRDES + ++ Sbjct: 258 EFEEFGKDRTRIIVTEIPYQVNKRMLIKNMADQVEDKRLEGISDIRDESDRNGMRIVIEL 317 Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMG-RVPQVMPLDGILKEWLAHRREVLFRR 375 R +P +++ + + ++ F +NM L + P+++ L IL E++A + +++ RR Sbjct: 318 KRDANPQVVLNRLIAQTQLQVTFAINMLALVHDQKQPKILTLREILDEYIAFQEQIITRR 377 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE-DKPKPVMVSRFSLTENQVDAILNL 434 + + + R +L+GLLIA NIDE+I IIR D K +++RF L + Q AIL++ Sbjct: 378 TIYDRRKAQERAHLLEGLLIAQDNIDEVIKIIRTSYDNAKERLMTRFGLDDVQAQAILDM 437 Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494 RL++L+ L+ ++++E L D LL S + Q+ + E+ EI K D + Sbjct: 438 RLKALQGLDREKLEAEYKELEERIAYYDKLL-SDEGLLRQVLKD--ELTEIRDKYGDQRK 494 Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSVDLSALHFKEG---- 548 F E D ++ +IE+E ++ G+I+ + ++ ++G Sbjct: 495 TEIAFVE----DDLDIED-LIEEEQCVFTLTQAGYIKRTPVSEYAAQSKGGQGRKGITTR 549 Query: 549 --DSLKIALHAHTTDRILLLSTDG-----KAYTLP-AGNLLSGRG--------HGEAIQL 592 D + A T D + + G K Y +P +G G GE +Q Sbjct: 550 DEDCVVDVFTASTHDYLFFFTDTGKVYRKKGYQIPESGKTAKGTNIVNILQVEQGEKVQT 609 Query: 593 LIDLNH--NQDIVTAFVY-DSTCKLLVVSSKGNAFIVEESEIIA-NTRKGKTFLKVSSEE 648 +I N D+ V + T K L V++ N + S I A +G + V + Sbjct: 610 MIHTRELDNPDLYLVMVTRNGTVKRLPVTALKN---IRNSGIRALRLEEGDQLISVRETD 666 Query: 649 KMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRG----KGVRLQSYKDGGISDVICFK 704 K ++ T D +AV F + + M R +G+RL+ G V + Sbjct: 667 GTKKILIATHDGMAVC--------FDENDVRPMGRDAVGVRGIRLRE----GDYVVSAAR 714 Query: 705 ICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVG 737 G T + + Y + + RGG+G Sbjct: 715 ATAGRTVLTITEKGYGKRTPVEDYRITNRGGIG 747 >gi|33592101|ref|NP_879745.1| DNA gyrase subunit A [Bordetella pertussis Tohama I] gi|33571745|emb|CAE41246.1| DNA gyrase subunit A [Bordetella pertussis Tohama I] gi|332381517|gb|AEE66364.1| DNA gyrase subunit A [Bordetella pertussis CS] Length = 893 Score = 399 bits (1024), Expect = e-108, Method: Compositional matrix adjust. Identities = 237/610 (38%), Positives = 347/610 (56%), Gaps = 61/610 (10%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 VSL + YL YA+S I RA+PD+RDG KPVHRR+++AM E+ D+ A+KKSARIV Sbjct: 11 VSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNRAYKKSARIV 70 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGDQSVYD++VR+AQ F RY L+ GQGNFG+IDGD+AAA RYTE R+ ++ Sbjct: 71 GDVIGKYHPHGDQSVYDTIVRMAQDFSMRYMLVDGQGNFGSIDGDNAAAMRYTEIRLAKI 130 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A +L +D++ VDF Y+ + EP++ PS+ PNLL NG+SGIAVGMAT+IP HN+QE+ Sbjct: 131 AHELLADIDQETVDFGPNYDGSEQEPLLLPSRLPNLLVNGSSGIAVGMATNIPPHNLQEV 190 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 + L + NPE SI++L+E I PDFPTGG+I + E YR GRG +RA+ E Sbjct: 191 VDGCLYCLRNPECSIDELIELIPAPDFPTGGVIY-GITGVREGYRTGRGRVIMRAKTHFE 249 Query: 260 EVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318 ++ +G+ IVV IPYQV K L E+IAEL+ K+I + DIRDES +D ++ R Sbjct: 250 DMEKGNRQAIVVDAIPYQVNKKTLQERIAELVNDKKIEGISDIRDESDKDGMRLVIELKR 309 Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378 P++++ +++ + ++ F +N+ L G+ P+++ L +++ +L HRREV+ RR+ F Sbjct: 310 GEVPEVVLNNLYKNTQLQDTFGMNLVALVDGQ-PRLLNLKQLIEYFLQHRREVVTRRTVF 368 Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV-----------------MVSR- 420 +++ R +L+GL +A NID+ IAII+ P PV M++R Sbjct: 369 QLRKARERGHVLEGLAVALANIDDFIAIIKAAPTP-PVARQELMARSWDSSLVREMLARV 427 Query: 421 ---------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453 + L+E Q ILN+RL+ L LE+ +I E + Sbjct: 428 DGDAAGGVAAFRPDDLAPEYGLQGDGNYRLSETQAQEILNMRLQRLTGLEQDKIIGEYKD 487 Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513 ++A + +L + I+ E++ +K FS S RR + D L Sbjct: 488 VMATIADLLDILARPDRITTIISEELQAIKAEFSTSAKDTRRAEIEVNATELDTEDLITP 547 Query: 514 MIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565 M + V +S+ G+I RS K A KE D + A+T D +L Sbjct: 548 M----DMVVTLSHGGYIKSQPLSEYRSQKRGGRGKQATAMKENDWVDQLFIANTHDYLLC 603 Query: 566 LSTDGKAYTL 575 S G+ Y L Sbjct: 604 FSNRGRVYWL 613 >gi|163731772|ref|ZP_02139219.1| DNA gyrase, A subunit [Roseobacter litoralis Och 149] gi|161395226|gb|EDQ19548.1| DNA gyrase, A subunit [Roseobacter litoralis Och 149] Length = 912 Score = 399 bits (1024), Expect = e-108, Method: Compositional matrix adjust. Identities = 231/603 (38%), Positives = 356/603 (59%), Gaps = 49/603 (8%) Query: 19 AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78 +VS+ + YL YA+S I RAIPDLRDG KPVHRRI+ AM E G +++KSAR Sbjct: 25 SVSIEQEMRTSYLDYAMSVIVSRAIPDLRDGLKPVHRRILFAMHETGNTHDKSYRKSARP 84 Query: 79 VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138 VG+V+G+ HPHGD ++YD+LVR+AQ F PL+ GQGNFG++DGD+ AA RYTE RM + Sbjct: 85 VGDVMGQYHPHGDSAIYDALVRMAQDFSMSLPLLDGQGNFGSMDGDNPAAMRYTEVRMDK 144 Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198 A +L +D+D V+++D Y+ + EP V P++FPN+L NG GIAVGMAT+IP HN+ E Sbjct: 145 PAAYLLADIDKDTVNYQDNYDGKQKEPTVLPARFPNMLVNGAGGIAVGMATNIPPHNLGE 204 Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258 + +A LALI+ P+++ E+L++Y+ GPDFPTGGI++ R ++Y GRG +RA+ V Sbjct: 205 VIDATLALIEEPDLTSEQLIDYVPGPDFPTGGIML-GRTGARKAYLEGRGSVIIRAKTRV 263 Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKN 317 EE+ + W IVV EIPYQV K+ +IEKIAE + K+I + ++DES + VR+V+ K Sbjct: 264 EEIRKDRWAIVVDEIPYQVNKATMIEKIAEQVREKKIEGISHVQDESDRNGVRVVVELK- 322 Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377 R +++M ++ + ++T F NM L+ GR P+ + L L ++ R EV+ RR++ Sbjct: 323 RDATAEVVMNQLYRFTPLQTYFGCNMLALNGGR-PEQLTLRKFLTYFIDFREEVVARRTA 381 Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSR-------------- 420 + ++ R +L GL +A NIDE++A IR + + + +++R Sbjct: 382 YLLRKARERSHVLCGLAVAVTNIDEVVATIRSSADASEARSKLMTRRWPAQDILPYIALI 441 Query: 421 ------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSG 468 ++L+E Q AIL+LRL+ L ++ ++ EL+ L + ++ +L S Sbjct: 442 DDPTHTANDDGTYNLSEAQARAILDLRLQRLTQIGVKEVTDELEELAGKIKEYLDILGSR 501 Query: 469 KQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRG 528 + + I+ E+REV+E+F+ RRT + S + +I +E + V ++ G Sbjct: 502 DRIMSIISDELREVRELFAVP-----RRTEIVDWS---GDMEDEDLIAREDMVVTVTQGG 553 Query: 529 WI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL 580 +I RS + LS KE D + A+T ++L +TDG AY L L Sbjct: 554 YIKRTPLADFRSQRRGGKGLSGGSLKEDDVVTTLFVANTHTQLLFFTTDGMAYKLKTWRL 613 Query: 581 LSG 583 G Sbjct: 614 PQG 616 >gi|256820850|ref|YP_003142129.1| DNA gyrase, A subunit [Capnocytophaga ochracea DSM 7271] gi|256582433|gb|ACU93568.1| DNA gyrase, A subunit [Capnocytophaga ochracea DSM 7271] Length = 841 Score = 399 bits (1024), Expect = e-108, Method: Compositional matrix adjust. Identities = 235/633 (37%), Positives = 374/633 (59%), Gaps = 42/633 (6%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 E + V + ++ Y+ Y++S I RA+PD+RDG KPVHRR+++ M +MG+ +KK Sbjct: 5 EKLIPVDISDEMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMYDMGVLSNRPYKK 64 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 SA IVGEV+GK HPHGD +VYD++VR+AQ + RY L+ GQGNFG++ GD AA RYTEA Sbjct: 65 SAAIVGEVLGKYHPHGDTAVYDTMVRMAQYWSLRYMLVDGQGNFGSMGGDPPAAMRYTEA 124 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 RM + +E +L +D++ VD + TY++ EP+V P++ PNLL NG++GIAVGMAT++ H Sbjct: 125 RMRKFSEEMLSDIDKETVDHQLTYDDSREEPIVLPTRIPNLLVNGSAGIAVGMATNMAPH 184 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 N+ E+ + +A IDN +I I++L++YI PDFPTGGII E + E+++ GRG +RA Sbjct: 185 NLNEVIDGTIAYIDNNDIEIDELIKYIKAPDFPTGGIIY-GYEGVKEAFKTGRGRVIIRA 243 Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE-DVRIVL 313 + +E+ +G CIVVTE+PYQV S L++K ++L+ R+ + D+RDESA +RIV Sbjct: 244 KAEFQEI-KGKDCIVVTEVPYQVDTSVLLKKTSDLVKEGRLEGITDVRDESARGKIRIVY 302 Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373 K R P++++ ++F ++++T F +N L GR PQ++ L ++ ++ HR +V++ Sbjct: 303 ILK-RDAVPNVVLNNLFKHTELQTSFSVNNIALVKGR-PQLLNLKDLIFHFVEHRYDVVY 360 Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEI---IAIIRNEDKPKPVMVSRFSLTENQVDA 430 RR+ + ++ R+ IL+G + D + I IIR DKPK +++ F LT+ Q +A Sbjct: 361 RRTDYELRKAKERIHILEGYMKVMATEDTMGKAIEIIRFHDKPKEDLIAEFDLTDVQAEA 420 Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490 IL L LR + K+ Q K E + LAE ++ +L +++ I E+ E+KE + Sbjct: 421 ILALALRRINKVLIQQTKEEYEEKLAEIRDLEDILARKERRTEIIKEELLEIKEKY---- 476 Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR-----SLKSHS---VDLSA 542 G R + E + + + + MI + + + IS+ G+I+ K+ S V A Sbjct: 477 --GDERRSTIEYAGGEFSV--EDMIPDDKMVITISHAGYIKRTQLSEYKTQSRGGVGQKA 532 Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKA-----YTLPAGNLLSGRGHGEAIQLLIDLN 597 ++ D L+ + +L + GK Y +P G S G AIQ LI++ Sbjct: 533 STTRDQDFLEHLFVSSNHQYLLFFTQKGKCFWMRVYEIPEG---SKTAKGRAIQNLINIE 589 Query: 598 HNQDIVTAFV---------YDSTCKLLVVSSKG 621 + D + AFV Y S L++ + KG Sbjct: 590 SD-DKIKAFVSVQNLKDEDYISNNYLIMATKKG 621 >gi|312879128|ref|ZP_07738928.1| DNA gyrase subunit A [Aminomonas paucivorans DSM 12260] gi|310782419|gb|EFQ22817.1| DNA gyrase subunit A [Aminomonas paucivorans DSM 12260] Length = 816 Score = 399 bits (1024), Expect = e-108, Method: Compositional matrix adjust. Identities = 252/691 (36%), Positives = 400/691 (57%), Gaps = 36/691 (5%) Query: 8 NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67 +S T + V + L ++ YL YA+S I RA+PD RDG KPV RR+++AM E+GL Sbjct: 5 SSQTDLFHKVIPLPLEEEIKHSYLDYAMSVIVGRALPDARDGLKPVQRRVLYAMLELGLR 64 Query: 68 FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAA 127 AFKKSAR+VGE +GK HPHGD ++Y+++ RL+Q F RYPL+ GQGNFG+IDGD A Sbjct: 65 HNQAFKKSARVVGETMGKYHPHGDAAIYETMARLSQDFSLRYPLVDGQGNFGSIDGDPPA 124 Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187 A RYTEAR+ + E +L +DE+ V++ ++E EP+V PS+ PNLL NG++GIAVGM Sbjct: 125 AMRYTEARLHSLGEEMLADIDEETVNWGPNFDESLQEPLVLPSRVPNLLVNGSTGIAVGM 184 Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247 AT++P HN++E+ +A AL+++P+I + +L+ + GPDFPTGG+I+ R+ IV++Y+ GR Sbjct: 185 ATNMPPHNLREVIDATCALLEDPQIELGELMALLPGPDFPTGGVIL-GRDGIVDAYKTGR 243 Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-A 306 G VR +E+ RG IV+TEIPY V K+ LIE IA+ + + + D+RDES Sbjct: 244 GKVIVRGCADIEDGRRGRKAIVITEIPYMVNKTSLIETIAKGAQSGHLDGITDLRDESNR 303 Query: 307 EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366 E +R+VL +R DP+L++ ++ + +++ F + L GR P+V+ L IL+ +L Sbjct: 304 EGIRVVL-ELHRDADPNLVLRQLYSRTQLQSTFGVINLALVDGR-PRVLTLHQILQVFLD 361 Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSL 423 HRR V+ RR+ R++ + R I++GL+ A ID++IA+IR+ P K +V Sbjct: 362 HRRAVVRRRTEHRLRKAEERAHIVEGLVRALDLIDQVIALIRSASDPASAKAALVETLGF 421 Query: 424 TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483 +E Q AIL++RL+ L LE +++ EL LL + E+ S+L + + E++E++ Sbjct: 422 SEVQAQAILDMRLQRLTGLERSKLEEELAQLLQDIERYRSILANPSILDGVVRGELQEIR 481 Query: 484 EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL 543 + RRT + A + + +I + I VV+S G++R + + Sbjct: 482 AAYEDD-----RRT---RIEDAVEDVSAEDLIPESEIVVVLSRDGFLRRMPLQDYRCQSR 533 Query: 544 HFK--EGDSLK----IAL-HAHTTDRIL-LLSTDGKAYTLPAGNLLSGR-GHGEAIQLLI 594 K +G S + IAL TT R L L ++ G+ + + L + G G+ + + Sbjct: 534 GGKGVKGASTRGEDEIALVTVTTTHRTLYLFTSRGRVFAIRGFTLPEPKTGKGKHVSTFV 593 Query: 595 DLNHNQDIVTA--FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652 L + +VT D + V+ +G A + +E+ R G+ L ++ E+ + Sbjct: 594 SLEEGERVVTLRDSRLDGARFVFFVTQRGVAKRLPVTELDGINRAGRRILGLAPEDTIAR 653 Query: 653 VVKVTGDHVAVVGENRKLLIFSIDQ---IPE 680 V+ TG GE+ LL + Q +PE Sbjct: 654 -VRFTG------GEDELLLTTAQGQTLRVPE 677 >gi|227508133|ref|ZP_03938182.1| DNA topoisomerase [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227511157|ref|ZP_03941206.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus buchneri ATCC 11577] gi|227085639|gb|EEI20951.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus buchneri ATCC 11577] gi|227192362|gb|EEI72429.1| DNA topoisomerase [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 850 Score = 399 bits (1024), Expect = e-108, Method: Compositional matrix adjust. Identities = 224/570 (39%), Positives = 343/570 (60%), Gaps = 20/570 (3%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + V L + +L YA+S I RA+PD+RDG KPVHRRI++ M+E+G+ +KKSA Sbjct: 20 ITNVDLSKKMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYDMNELGVTPDKPYKKSA 79 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 RIVG+V+GK HPHGD +VY+S+VR+AQ F RY L+ G GNFG++DGD AAA RYTEAR+ Sbjct: 80 RIVGDVLGKYHPHGDTAVYESMVRMAQTFSYRYMLVDGHGNFGSVDGDGAAAMRYTEARL 139 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 +++A +L+ ++++ +DF Y+ + EP V PS+FPNLL NG SGIAVGMAT+IP HN+ Sbjct: 140 SKIAMEMLRDINKNTIDFVPNYDGTEREPSVLPSRFPNLLVNGASGIAVGMATNIPPHNL 199 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ A L+DNP+ + L+E + GPDFPTGG+++ + I ++Y GRG +RA+ Sbjct: 200 SEVISAIHVLMDNPDATTADLMEVLPGPDFPTGGVVM-GKSGIRKAYETGRGSIILRAKV 258 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316 +E G I+ TE+PY V K++LIE+IAEL KRI + DI DES + V+ Sbjct: 259 EIEGEASGKQRIIATELPYMVNKAKLIERIAELARDKRIEGITDINDESDREGMRVVIDV 318 Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376 R ++++ +++ L+ M+T F NM + G P+++ L IL+ +L H+ EV+ RR+ Sbjct: 319 RRDASAEVILNNLYKLTLMQTSFSFNMLAIVKG-TPRILSLKEILQYYLEHQVEVITRRT 377 Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAILN 433 + +Q R IL+GL IA +IDEII IIR K +++ F L++ Q AIL+ Sbjct: 378 KYELQKAQARAHILEGLRIALDHIDEIIKIIRGSQTGEVAKNQLITGFGLSDKQAQAILD 437 Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493 +RL L LE +I E + L+ + E ++L+S + + NQI E E+ EI K D Sbjct: 438 MRLVRLTGLEREKIDKEYNQLMKDIEDFKAILSS-RDRVNQIIYE--ELLEIQKKFGDER 494 Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD--------LSALHF 545 R EV + + +IE+E + V +++ G+I+ L + + + Sbjct: 495 RTELLVGEV----LSLEDEDLIEEEDVIVSLTHNGYIKRLPTTEFKAQNRGGRGVQGMGV 550 Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTL 575 + D ++ + T D +L + GK Y + Sbjct: 551 HDDDFVEQLVSTSTHDVLLFFTDAGKVYRM 580 >gi|197302274|ref|ZP_03167333.1| hypothetical protein RUMLAC_01001 [Ruminococcus lactaris ATCC 29176] gi|197298705|gb|EDY33246.1| hypothetical protein RUMLAC_01001 [Ruminococcus lactaris ATCC 29176] Length = 841 Score = 399 bits (1024), Expect = e-108, Method: Compositional matrix adjust. Identities = 254/710 (35%), Positives = 400/710 (56%), Gaps = 41/710 (5%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 + V V L+ +E Y+ YA+S I RA+PD+RDG KPV RRI+++M E+ +K Sbjct: 7 DKVHEVDLKKTMETSYIDYAMSVIASRALPDVRDGLKPVQRRILYSMIELNNGPDKPHRK 66 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 ARIVG+ +GK HPHGD S+Y +LV LAQ + RYPL+ G GNFG++DGD AAA RYTEA Sbjct: 67 CARIVGDTMGKYHPHGDSSIYGALVNLAQEWSTRYPLVDGHGNFGSVDGDGAAAMRYTEA 126 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 R+++++ + +++D VDF ++E + EP V PS+FPNLL NGTSGIAVGMAT+IP H Sbjct: 127 RLSKISMEMTADINKDTVDFTPNFDETEKEPSVLPSRFPNLLVNGTSGIAVGMATNIPPH 186 Query: 195 NVQEICEAALALIDN-----PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249 N++E+ A + +ID+ E +IE++L+ I GPDFPTG I+ +R I E+YR GRG Sbjct: 187 NLREVIAAVVKIIDDQIEDKEETTIEEILQIIKGPDFPTGAEILGTR-GIEEAYRTGRGK 245 Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309 RVRA +E + G I+VTE+P+ V K+RLIEKIAEL+ K+I + D+ D+S+ + Sbjct: 246 IRVRAITNIEPMQNGKNRIIVTELPFMVNKARLIEKIAELVRDKKIDGITDLSDQSSREG 305 Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369 + R ++P++++ ++ + ++ F + M L +G P+VM L +L +L H+ Sbjct: 306 MRICIELRRDVNPNVILNQLYKHTQLQDTFGVIMLAL-VGNQPKVMNLLEMLNYYLKHQE 364 Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTEN 426 +V+ RR+ + + R IL+GLLIA NIDE+I IIR N K ++ RF L+E Sbjct: 365 DVVTRRTKYDLNKAQERAHILEGLLIALDNIDEVIKIIRGSQNVQIAKQELIKRFGLSEV 424 Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486 Q AI+++RLR+L LE +I++E L+ + E+ ++L K I EI + E Sbjct: 425 QAQAIVDMRLRALTGLEREKIEAEYAELMKKIEEFKAILADKKLLLGVIKKEILVISE-- 482 Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR-----SLKSHS---V 538 K D R R + E + + +I +E + + ++ G+I+ + KS + Sbjct: 483 -KYGDDRRTRIGYDEFDIS-----MEDLIPRENVVITMTKLGYIKRMTMDTFKSQNRGGK 536 Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEAIQLLIDL 596 + + E D ++ + I+ + G+ Y + A + +GR G AI L+ L Sbjct: 537 GIKGMQTLEDDYIRELFVTTSHHYIMFFTNTGRVYRMKAYEIPEAGRTARGTAIINLLQL 596 Query: 597 NHNQDIVTAFV----YDSTCKLLVVSSKGNAFIVEESEI--IANTRKGKTFLKVSSEEKM 650 + I TA + Y+ L + + KG +V+++ I AN RK E+ Sbjct: 597 MPEEKI-TAIIPLREYEEGKYLFMATEKG---LVKKTPIQDYANVRKTGLAAIALREDDR 652 Query: 651 KLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGK---GVRLQSYKDGGI 697 + VKVT + ++ R + ++ S G+ GVR + D + Sbjct: 653 LIEVKVTDNTEDILLVTRDGMCIRFNETDVRSTGRVSMGVRGMNLTDNDV 702 >gi|315650186|ref|ZP_07903261.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Eubacterium saburreum DSM 3986] gi|315487543|gb|EFU77851.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Eubacterium saburreum DSM 3986] Length = 824 Score = 399 bits (1024), Expect = e-108, Method: Compositional matrix adjust. Identities = 264/766 (34%), Positives = 428/766 (55%), Gaps = 54/766 (7%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 + L+ +E+ Y+ YA+S I RA+PD+RDG KPV RR++ +M E+ +K ARIV Sbjct: 12 IDLKKTMEKSYIDYAMSVIAARALPDVRDGLKPVQRRVLFSMIELNNGPDKPHRKCARIV 71 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+ +GK HPHGD S+Y +LV +AQ + RY L+ G GNFG++DGD AAA RYTEAR++++ Sbjct: 72 GDTMGKYHPHGDSSIYGALVNMAQDWSMRYTLVDGHGNFGSVDGDGAAAMRYTEARLSKI 131 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A +L +++D VDF ++E + EP V PS+FPNLL NGT+GIAVGMAT+IP HN++E+ Sbjct: 132 AMEMLADINKDTVDFAPNFDETEKEPTVLPSRFPNLLVNGTTGIAVGMATNIPPHNIKEV 191 Query: 200 CEAALALIDN----PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 +A + LIDN + +I++++ I GPDFPTG I+ R I E+Y GRG +VRA Sbjct: 192 IDAVVRLIDNKIEDKDTTIDEIISIIKGPDFPTGANILGLR-GIKEAYTTGRGKIKVRAV 250 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315 +E + G IVV+E+PY V K++LIEKIAEL+ KRI + D+RDES + V+ Sbjct: 251 TEIESMSNGKSRIVVSELPYLVNKAKLIEKIAELVKDKRIDGITDLRDESNREGMRVVIE 310 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 + ++ ++++ ++ + ++ F +NM L + P+V+ + +L+ +LAH+ +V+ RR Sbjct: 311 LRKDVNANIILNRLYKHTQLQDTFGVNMLAL-VDNQPKVLNILQMLQYYLAHQEDVVTRR 369 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432 + + + R IL+GLLIA NIDEII IIR N + K ++ RF L++ Q AI+ Sbjct: 370 TKYELNKAKERAHILEGLLIALDNIDEIIKIIRGSANVNIAKEELIKRFGLSDVQAQAIV 429 Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492 ++RLR+L LE +++SE + LLA+ E + +L K+ I EI V++ + Sbjct: 430 DMRLRALTGLERERLESEYNELLAKIEYFEGILADEKKLLTLIKEEILVVEDKYKDD--- 486 Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD--------LSALH 544 RRT F + + L I+KE I + ++ G+I+ + + + + + Sbjct: 487 --RRTGFMQDDDMEDEDL----IQKEDIIIAMTKLGYIKRMSPDNFNVQNRGGKGIKGMQ 540 Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDI 602 + D ++ + + T + I + G+ YT+ + S G AI L+ L ++ I Sbjct: 541 TIDDDFIEDIVMSTTHNDIYFFTNKGRVYTIKGYKIPEASRTARGIAIVNLLQLQPDEKI 600 Query: 603 VTAFVYDSTCKLLVVSSKGNAFIVEESEIIA--------NTRK-GKTFLKVSSEEKMKLV 653 + + S K S+ G F+V ++ I N RK G + ++ ++++ + Sbjct: 601 --SAIIPSEAK----SNDGYLFMVTKNGTIKKCQINLFDNIRKNGLAAINLTEDDEL-IE 653 Query: 654 VKVT-GDHVAVVGENRKLLIFSIDQ-IPEMSRG-KGVRLQSYKDGGISDVICFKIC---E 707 VKVT GD ++ + I D+ I + RG GVR G +VI ++ E Sbjct: 654 VKVTHGDDDLIIVSKYGMCIRINDKDIRAVGRGATGVRGMRLNTG--DEVIGMQLASQGE 711 Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753 L + G Y + + RGG G + K ++GK + + Sbjct: 712 YLLLVSEYG--YGKRTKISEFKVQNRGGKGIICYKDNEKTGKLVGA 755 >gi|296114886|ref|ZP_06833534.1| DNA gyrase subunit A [Gluconacetobacter hansenii ATCC 23769] gi|295978592|gb|EFG85322.1| DNA gyrase subunit A [Gluconacetobacter hansenii ATCC 23769] Length = 934 Score = 399 bits (1024), Expect = e-108, Method: Compositional matrix adjust. Identities = 229/594 (38%), Positives = 342/594 (57%), Gaps = 54/594 (9%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 V++ + YLAYA+S I RA+PD+RDG KPVHRRI+++M E G ++KSAR V Sbjct: 16 VTIEEEMRSSYLAYAMSVIVSRALPDVRDGLKPVHRRILYSMRESGFTHDKPYRKSARAV 75 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+V+GK HPHGD S+YD++VR+AQ + R LI GQGNFG++DGDS AA RYTEAR+ + Sbjct: 76 GDVMGKYHPHGDSSIYDAMVRMAQSWSMRVKLIDGQGNFGSVDGDSPAAMRYTEARLARA 135 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A +L +D D VDF+ Y+E + EP + P+ FPNLL NG SGIAVGMAT+IP HN EI Sbjct: 136 ASFLLDDIDRDTVDFQPNYDESEQEPQILPAAFPNLLVNGASGIAVGMATNIPPHNPGEI 195 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 +A LA+I+ P+++++ +L+Y+ GPDFPTGG I+ R I ++ GRG +RAR VE Sbjct: 196 IDATLAMIERPDMTLDDILQYVPGPDFPTGGTIL-GRAGIRSAFETGRGSVIIRARAEVE 254 Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319 ++ R I+VTEIPYQV K+ L E+IAEL+ K++ + DIRDES ++ R Sbjct: 255 DIRRDRKAIIVTEIPYQVNKATLQERIAELVRNKQVEGISDIRDESDRSGMRIVIEIKRD 314 Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379 P++++ ++ + ++T F +NM L G+ P++M L +L+ ++ R EV+ RR+ F Sbjct: 315 ATPEVVLNQLYRFTQLQTSFGVNMLALDGGQ-PRLMGLKDVLQAFIRFREEVILRRARFD 373 Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAIIRN----------------------------ED 411 + R +L GL+IA NID +IA+IR D Sbjct: 374 LNKARDRGHLLVGLVIAVANIDAVIALIRAAPDAATARAALMERAWDAGDIAPLLALIHD 433 Query: 412 KPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQ 471 + V+ R LTE Q IL LRL+ L LE +I+ EL + ++ ++ S ++ Sbjct: 434 EGNVVVDQRVHLTEAQARGILELRLQRLTGLERDKIQQELSEVATRINELLEIIASRPRR 493 Query: 472 WNQIACEIREVK-EIFS-KSTDLGRRRTTFCEVSRADKATLQ--QAMIEKEPITVVISNR 527 + E+ V+ EI + ++TD+ AD A Q +++IE + V I+ Sbjct: 494 MEVMRNELATVRAEIATPRATDI------------ADYAGDQTDESLIEPGQMVVTITRD 541 Query: 528 GWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573 G+I R+ +A + D + + +AHT +L S+ GKAY Sbjct: 542 GFIKRTPLDVFRAQNRGGRGRTAAGRRGDDIIIRSFNAHTHQWVLFFSSGGKAY 595 >gi|156888533|gb|ABU96671.1| DNA gyrase subunit A [Streptococcus dysgalactiae subsp. equisimilis] gi|323127219|gb|ADX24516.1| DNA gyrase subunit A [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 834 Score = 398 bits (1023), Expect = e-108, Method: Compositional matrix adjust. Identities = 225/580 (38%), Positives = 356/580 (61%), Gaps = 26/580 (4%) Query: 12 LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71 + + N+ V+L ++ ++ YA+S I RA+PD+RDG KPVHRRI++ M+E+G+ Sbjct: 1 MQDRNLIDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVMPDKP 60 Query: 72 FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131 KKSARI G+V+GK HPHGD S+Y+++VR+AQ + R+ L+ G GNFG++DGD AAA RY Sbjct: 61 HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRY 120 Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191 TEARM+++A +L+ ++++ VDF+D Y+ + EP+V P++FPNLL NG +GIAVGMAT+I Sbjct: 121 TEARMSKIALELLRDINKNTVDFQDNYDGSEREPLVLPARFPNLLVNGATGIAVGMATNI 180 Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251 P HN+ E +A +++NP+ + L+E I GPDFPTG +++ R I +Y G+G Sbjct: 181 PPHNLAESIDAVKMVMENPDCTTRDLMEVIPGPDFPTGALVM-GRSGIHRAYDTGKGSIV 239 Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVR 310 +R+R +E G IVVTE PY V K+++ E I L KRI + +RDES+ E VR Sbjct: 240 LRSRTEIETTKTGRERIVVTEFPYGVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGVR 299 Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370 V+ + R ++++ ++F L+ ++T F NM + G VP+++ L I+ +++H++E Sbjct: 300 FVIEIR-RDASANVILNNLFKLTSLQTNFSFNMLAIENG-VPKILSLRQIIDNYISHQKE 357 Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQ 427 V+ RR+ F + R IL+GLLIA ++DE+IAIIRN + + ++SRF+L+E Q Sbjct: 358 VITRRTQFDKNKAEARAHILEGLLIALDHLDEVIAIIRNSETDVIAQAELMSRFNLSERQ 417 Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487 AIL++RLR L LE +I+SE D LLA + +L ++ I E+ E+K ++ Sbjct: 418 SQAILDMRLRRLTGLERDKIQSEYDELLALIADLADILAKPERVVTIIKEEMDEIKRKYA 477 Query: 488 KSTDLGRRRTTFC--EVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHS 537 S RRT EV + + +IE+E + + +SN+G+I+ L K Sbjct: 478 NS-----RRTELMIGEVL----SLEDEDLIEEEDVLITLSNKGYIKRLAQDEFRAQKRGG 528 Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPA 577 + + D ++ + T D +L + G+ Y L A Sbjct: 529 RGVQGTGVNDDDFVRELVSTSTHDTLLFFTNFGRVYRLKA 568 >gi|116617180|ref|YP_817551.1| DNA gyrase subunit A [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|116096027|gb|ABJ61178.1| DNA gyrase subunit A [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 848 Score = 398 bits (1023), Expect = e-108, Method: Compositional matrix adjust. Identities = 233/621 (37%), Positives = 365/621 (58%), Gaps = 56/621 (9%) Query: 12 LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71 L + +K +L ++ +L+YA+S I RA+PD+RDG KPVHRRI+++M E G Sbjct: 4 LNDSRIKNANLSEQMKTSFLSYAMSVIVARALPDVRDGMKPVHRRILYSMIEQGNTPDKP 63 Query: 72 FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131 KKSARIVG+V+GK HPHGD ++Y+S+VR+AQPF R+ LI G GNFG++DGD AAA RY Sbjct: 64 HKKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRHMLIDGHGNFGSVDGDGAAAMRY 123 Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191 TEAR+++VA +++ +++D V+F Y+ E+ EP V P++FPNLL NG +GIAVGM T+I Sbjct: 124 TEARLSKVAMEMVRDLNKDTVNFIPNYDGEEREPEVLPARFPNLLVNGATGIAVGMTTNI 183 Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251 P+HN+ E+ A L++NPE + L+E + GPDFPTGGI++ + I +Y GRG Sbjct: 184 PTHNLAEVISALHILMNNPEATTADLMEALPGPDFPTGGIVM-GKSGIRRAYETGRGTVT 242 Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311 VRA+ +E++ G IVVTE+PY V K+RLIE+I+EL K+I + IRDES + Sbjct: 243 VRAKVDIEQLKSGKEQIVVTELPYAVNKARLIERISELARDKKIEGITGIRDESDREGLR 302 Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371 + R +++ +++ + ++T F NM + G P+ M L IL +LAH+REV Sbjct: 303 ISIDVRRDASASVILNNLYKQTLLQTSFSFNMLAIDHG-APKTMSLKEILVAYLAHQREV 361 Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLTENQV 428 + RR+ F +Q R IL+GL IA +IDEII IIR+ ++ K +++ ++L++ Q Sbjct: 362 IRRRTVFELQKAQARAHILEGLRIALDHIDEIITIIRSSKTSEEAKTRLINGYALSDKQA 421 Query: 429 DAILNLRLRSLRKL------EEYQ----IKSELDNLLAEKEKIDSLLNSGKQQWNQIACE 478 AIL++RL L L EEYQ + ++L ++LA +E++D ++ +N Sbjct: 422 QAILDMRLVRLTGLERDKIEEEYQKLVALIADLKDILAHEERVDEII------YN----- 470 Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV 538 E+ T G +R T +V + + +IE+E + V ++N G+I+ + + Sbjct: 471 -----ELLEIQTKFGDKRRTELQVGDV-LSIEDEDLIEEEDVIVTLTNSGYIKRVATGEF 524 Query: 539 D--------LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL--------------- 575 + ++ + D + + T D +L + GK Y + Sbjct: 525 KAQNRGGRGVQGMNVHDEDFVDQMISTSTHDTLLFFTNKGKVYRMKGYEVPEYGRQAKGI 584 Query: 576 PAGNLLSGRGHGEAIQLLIDL 596 P NLL+ G+ E IQ +I++ Sbjct: 585 PVVNLLNFEGN-EKIQTVINV 604 >gi|294140839|ref|YP_003556817.1| DNA gyrase subunit A [Shewanella violacea DSS12] gi|293327308|dbj|BAJ02039.1| DNA gyrase, A subunit [Shewanella violacea DSS12] Length = 905 Score = 398 bits (1023), Expect = e-108, Method: Compositional matrix adjust. Identities = 241/636 (37%), Positives = 360/636 (56%), Gaps = 57/636 (8%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 ++ +++ L+ YL YA+S I RA+PD+RDG KPVHRR++ AMSE+ D+ +KKS Sbjct: 7 SITPINIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELKNDWNKPYKKS 66 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 AR+VG+VIGK HPHGD +VYD++VRLAQPF RYPLI GQGNFG++DGD+AAA RYTE R Sbjct: 67 ARVVGDVIGKYHPHGDTAVYDTIVRLAQPFSMRYPLIDGQGNFGSVDGDAAAAMRYTEIR 126 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 M ++A +L ++++ VDF Y+ + P V P++ P LL NG+SGIAVGMAT+IP HN Sbjct: 127 MDKLAHQLLADLEKETVDFVPNYDGTEFIPAVMPTRIPTLLINGSSGIAVGMATNIPPHN 186 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 + E+ + LALI+ P +SIE+L+EYI GPDFPT II R+ I+++Y+ GRG +R++ Sbjct: 187 MTEVIKGCLALIEEPALSIEQLMEYIPGPDFPTAAII-NGRKGIIDAYKTGRGRAIMRSK 245 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315 V+ G I+V EIPYQV K+RLIEKIAEL+ K+I + +RDES +D ++ Sbjct: 246 AEVQVEDNGRERIIVHEIPYQVNKARLIEKIAELVKDKKIEGITGLRDESDKDGMRIVIE 305 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 R ++++ +++ + M+ F +NM L+ G+ P++ L +++ ++ HRREV+ RR Sbjct: 306 IKRGEVGEVVLNNLYAQTQMQCSFGINMVALTNGQ-PKLFNLKEMIECFILHRREVVTRR 364 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV----------------- 418 + F ++ R IL+ L IA NID IIA+I+ P V Sbjct: 365 TVFELRKARDRAHILESLAIALANIDPIIAMIKASPTPAEAKVKLVDQGWELGHVQAMLE 424 Query: 419 --------------------SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458 + LT+ Q AIL+LRL L LE +I +E + L+ Sbjct: 425 KAGDDAARPEWLEPEYGIRDGLYYLTQPQAQAILDLRLHKLTGLEHEKILAEYEELIDII 484 Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518 + +L S ++ I E+ E+ E F G R T + D + + +I +E Sbjct: 485 AALLYILRSPERLLEVIKEELNEILENF------GDERRTVINANEVDMSL--EDLINEE 536 Query: 519 PITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570 + V +S+ G+ + + + SA K+ D ++ L A+T D IL S G Sbjct: 537 DVVVTLSHLGYAKYQPLTDYQAQRRGGKGKSAAKVKDEDFVEKLLVANTHDTILCFSDFG 596 Query: 571 KAYTLPAGN--LLSGRGHGEAIQLLIDLNHNQDIVT 604 K Y L L S + G I L+ L+ + I Sbjct: 597 KLYWLKVYQLPLASRQARGRPIVNLLPLSEGEHITA 632 >gi|86749993|ref|YP_486489.1| DNA gyrase subunit A [Rhodopseudomonas palustris HaA2] gi|86573021|gb|ABD07578.1| DNA gyrase subunit A [Rhodopseudomonas palustris HaA2] Length = 925 Score = 398 bits (1023), Expect = e-108, Method: Compositional matrix adjust. Identities = 243/631 (38%), Positives = 357/631 (56%), Gaps = 55/631 (8%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 +++ VS+ ++ YL YA+S I RA+PD RDG KPVHRRI+ M E G ++ ++KS Sbjct: 17 DIRPVSILDEMKRSYLDYAMSVIVARALPDARDGLKPVHRRILFGMYENGFEWNKPYRKS 76 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 AR VG+VIGK HPHGDQSVYD++VR+AQ F R PLI GQGNFG++DGD+ AA RYTE+R Sbjct: 77 ARTVGDVIGKYHPHGDQSVYDAMVRMAQDFSMRVPLIDGQGNFGSVDGDAPAAMRYTESR 136 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 +T++A+L+L +D+D VD++D Y+ +EP V P+KFPNLL NG GIAVGMAT+IP HN Sbjct: 137 LTKIAQLLLDDLDKDTVDYQDNYDGSFNEPQVLPAKFPNLLVNGAGGIAVGMATNIPPHN 196 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 + E+ +A +ALID+P +SI+ L I GPDFPTGGII+ R I +Y GRG +R + Sbjct: 197 LGEVIDACIALIDDPALSIDDLNVIIPGPDFPTGGIIL-GRAGIRLAYHTGRGSIVMRGK 255 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315 +E V + I+++EIPYQV K+ ++E+IA+L+ K+I + D+RDES D V+ Sbjct: 256 VEIETVRKDREAIIISEIPYQVNKATMVERIADLVREKKIEGISDLRDESDRDGFRVVIE 315 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 R PD+++ ++ + ++T F NM L GR PQ+M L +L ++A R +V+ RR Sbjct: 316 LRRDAVPDVVLNQLYRFTPLQTNFGANMVALDAGR-PQLMNLKDLLTLFVAFREQVVTRR 374 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK----------------PVMVS 419 + + + R IL GL IA NIDEII +IRN P M++ Sbjct: 375 TKYLLNKARDRAHILVGLAIAVANIDEIIRVIRNSPDPNTARETLMSRDWPAADVAAMIT 434 Query: 420 -----RFSLTEN--------QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466 R L E+ Q AIL+LRL+ L L +I ELD L E +L Sbjct: 435 LIDDPRHKLNEDGTARLSFEQAKAILDLRLQRLTALGREEIAEELDKLALEIADYLDILR 494 Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526 S + + E+ VK F+ R+T E + + +I++E + V +S+ Sbjct: 495 SRARVQTIVKDELIAVKTEFATP-----RKTVIIE---QEGEVEDEDLIQREDMVVTVSH 546 Query: 527 RGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---- 574 G++ R+ + S + +E D + A T +L S+ G+ Y Sbjct: 547 AGYVKRVPLSTYRAQRRGGKGRSGMATREEDFVSRLFVASTHTPVLFFSSRGQVYKEKVW 606 Query: 575 -LPAGNLLSGRGHGEAIQLLIDLNHNQDIVT 604 LP + G G+A+ ++ L + I T Sbjct: 607 RLP---IAPPNGRGKALINILPLEQGERITT 634 >gi|220906791|ref|YP_002482102.1| DNA gyrase subunit A [Cyanothece sp. PCC 7425] gi|219863402|gb|ACL43741.1| DNA gyrase, A subunit [Cyanothece sp. PCC 7425] Length = 839 Score = 398 bits (1023), Expect = e-108, Method: Compositional matrix adjust. Identities = 269/761 (35%), Positives = 420/761 (55%), Gaps = 55/761 (7%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 V +L +E+ YL YA+S I RA+PD+RDG KPVHRRI++AM E+GL ++K A Sbjct: 15 VIPTALHTEMEQSYLEYAMSVIVGRALPDVRDGLKPVHRRILYAMHELGLTPDRPYRKCA 74 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+V+GK HPHGDQSVYD+LVR+ Q F RYPL+ G GNFG++D D AA RYTE R+ Sbjct: 75 RVVGDVLGKYHPHGDQSVYDALVRMVQTFSSRYPLLDGHGNFGSVDNDPPAAMRYTETRL 134 Query: 137 TQVAELILQG-VDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 + VA L G + E+ V+F ++ EPVV PS+ P LL NG +GIAVGMAT+IP HN Sbjct: 135 SPVAHQALLGEIGEETVEFMGNFDNSQQEPVVLPSQLPVLLLNGCAGIAVGMATNIPPHN 194 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 + E+ +A +ALID P++S+++LLE + GPDFPT G I+ E I E+Y GRG +RA Sbjct: 195 LAEVVDALIALIDRPDLSVDQLLELVPGPDFPT-GGIIIGTEGIREAYTTGRGSITLRAV 253 Query: 256 WCVEEV--GRGSW---CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDV 309 +EE+ GRG I++TE+PYQV KS LIEKIAELI RI + D+RDES E + Sbjct: 254 AQMEEMQPGRGRHRRPAIIITELPYQVNKSGLIEKIAELINQGRIEGIADLRDESDREGM 313 Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369 RIV+ K R P L++ ++ + ++T F + M L G+ P+ M L +L+ +L R Sbjct: 314 RIVIELK-RETQPQPLLDQLYRQTQLQTNFGVIMLALVDGQ-PRQMGLKELLEHFLNFRE 371 Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTEN 426 L RR ++ R+ +++GLL A N+D +I ++R + K + S +L++ Sbjct: 372 HTLTRRYRHQLDQAQSRLHLVEGLLTALQNLDRVITLLREATDGSAAKQTLQSELNLSDR 431 Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486 Q DAIL++ LR L LE+ +++E D L+ + +++++LL S + + ++R +K + Sbjct: 432 QADAILSMPLRRLTGLEQQNLRTEHDQLVGQIQQLETLLGSRHELLKALKKDLRSLKRQY 491 Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL------------- 533 + +R T + ++++ + E +T+ +S RG++R L Sbjct: 492 AD------QRLTRIQTEAEPLPSVEELAADTE-VTLELSQRGYVRCLRGGERGRRNQARS 544 Query: 534 ---KSHSVDLSALHFKEGDSLKIAL-----HAHTTDRILLLSTDGKAY--TLPAGNLLSG 583 K+++ ++ LK L A +D +L+ + GK Y L A L Sbjct: 545 EGAKANNAKADPAQPEQPQELKKDLILYNPRAKLSDALLVFTQSGKGYRVDLTAMPLGDR 604 Query: 584 RGHG-EAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGK 639 R G + LL + + IV F+ S +L+++S++G A + + T +G Sbjct: 605 RDKGVPLVTLLPESAQQESIVAQFLCPPLPSEQQLVLLSAEGRAKRISLEDFAEVTARGL 664 Query: 640 TFLKVSSEEKMKLVVKV-TGDHVAVVGENRKLLIFSIDQIPEMSRG----KGVRLQSYKD 694 + K+ + + + V + VA+ +LL F+ D+IP M R + +RL +K Sbjct: 665 SVCKLKDGDYLAWMGLVDSNSEVAIATSTGRLLRFASDEIPLMGRTTLGQQAIRL--HKQ 722 Query: 695 GGISDVICFKICEGLTWIDSAGRSYNRSENDL-LGWLGKRG 734 + I + + L + G N + LG LG G Sbjct: 723 ERLVGAIVLQTYDNLLLVSERGYGKRMPLNAVRLGRLGDLG 763 >gi|317499300|ref|ZP_07957573.1| hypothetical protein HMPREF0996_02557 [Lachnospiraceae bacterium 5_1_63FAA] gi|316893469|gb|EFV15678.1| hypothetical protein HMPREF0996_02557 [Lachnospiraceae bacterium 5_1_63FAA] Length = 840 Score = 398 bits (1023), Expect = e-108, Method: Compositional matrix adjust. Identities = 240/654 (36%), Positives = 379/654 (57%), Gaps = 39/654 (5%) Query: 8 NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67 + NT+ ++ V + L+ +E Y+ YA+S I RA+PD+RDG KPV RRI++AM E+ Sbjct: 2 DENTIFDK-VHDIDLKKTMENSYIDYAMSVIASRALPDVRDGLKPVQRRILYAMIELNNG 60 Query: 68 FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAA 127 +K ARIVG+ +GK HPHGD S+Y +LV +AQ + RYPL+ G GNFG++DGD AA Sbjct: 61 PDKPHRKCARIVGDTMGKYHPHGDSSIYGALVNMAQEWSTRYPLVDGHGNFGSVDGDGAA 120 Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187 A RYTEAR+++++ +L ++++ VDFR ++E + EP V PS+FPNLL NGT GIAVGM Sbjct: 121 AMRYTEARLSKISMELLADINKNTVDFRPNFDETEKEPAVLPSRFPNLLVNGTQGIAVGM 180 Query: 188 ATSIPSHNVQEICEAALALIDNP-----EISIEKLLEYIIGPDFPTGGIIVESRESIVES 242 AT+IP HN++E+ A + +IDN E +IE+LLE I GPDFPTG I+ R I ++ Sbjct: 181 ATNIPPHNLREVINAVIKIIDNQVEEDRETTIEELLEIIKGPDFPTGATIL-GRSGIDQA 239 Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302 YR GRG +VRA +E + G I+VTE+PY V K+RLIEKIA L+ K++ + ++R Sbjct: 240 YRTGRGKIKVRAVTDIEAMANGKQRIIVTELPYMVNKARLIEKIATLVREKKVEGITELR 299 Query: 303 DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362 DES + R + ++++ ++ + ++ F + M L G+ P+ M L +L Sbjct: 300 DESDRSGMRICIELRRDANANVILNQLYKHTQLQDTFGVIMLALVDGQ-PKTMNLHEMLD 358 Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVS 419 +L H+++V+ RR+ + + + R IL+GLLIA NIDE+I IIR N K ++ Sbjct: 359 YYLTHQKDVVTRRTRYELNKAEERAHILEGLLIAQDNIDEVIKIIRGAENIQAAKIELME 418 Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479 RF L++ Q AI+++RLR+L LE +++ E L+ ++ ++L K+ I EI Sbjct: 419 RFGLSDAQAQAIVDMRLRALNGLERAKLEKEYKELMERIGELKAILADEKKLLGVIKDEI 478 Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR-----SLK 534 +++ + RRT D +++ +I +E + ++ G+I+ + K Sbjct: 479 ALIRDKYGDE-----RRTQIG--FDVDDISMED-LIPRENTVITMTKLGYIKRMTVDNFK 530 Query: 535 SHS---VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL-LSGR-GHGEA 589 S + + + + D ++ T I+ + G+ Y L A + SGR G A Sbjct: 531 SQNRGGKGIKGMQTIDEDYIEELFMTTTHHYIMFFTNTGRVYRLKAYEIPESGRTARGSA 590 Query: 590 IQLLIDLNHNQDIVTAFV----YDSTCKLLVVSSKGNAFIVEESEII--ANTRK 637 I L+ L + I TA + Y+ LL+ + G +V++S I+ AN RK Sbjct: 591 IVNLLQLQPGEKI-TAVIPLVDYEEGKYLLMATKYG---VVKKSSIMEYANIRK 640 >gi|312869239|ref|ZP_07729411.1| DNA gyrase, A subunit [Lactobacillus oris PB013-T2-3] gi|311095260|gb|EFQ53532.1| DNA gyrase, A subunit [Lactobacillus oris PB013-T2-3] Length = 847 Score = 398 bits (1023), Expect = e-108, Method: Compositional matrix adjust. Identities = 220/571 (38%), Positives = 349/571 (61%), Gaps = 22/571 (3%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + V L ++ +L YA+S I RA+PD+RDG KPV RRI++ M+E+G+ +KKSA Sbjct: 9 ITDVKLTSQMKNSFLDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVTPDKPYKKSA 68 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 RIVG+V+GK HPHGD S+Y+ LVR+AQ F RY L+ G GNFG++DGDSAAA RYTEARM Sbjct: 69 RIVGDVMGKFHPHGDSSIYEGLVRMAQDFSYRYMLVDGHGNFGSVDGDSAAAMRYTEARM 128 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 +++A +L+ +++D VDF Y+ + EP V P++FPNLL NG SGIAVGMAT+IP+HN+ Sbjct: 129 SKIALEMLRDINKDTVDFTPNYDGTEKEPAVLPARFPNLLVNGASGIAVGMATNIPTHNL 188 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ A L++NP+++I +L++ + GPDFPTGG+++ + I ++Y GRG VRA+ Sbjct: 189 GEVISAIHMLMNNPDVTIPELMKALPGPDFPTGGVVM-GKAGIRKAYETGRGSIIVRAKV 247 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316 +EE G I+V EIPY V K+ LI +IA+L K I + D+ DE+ D ++ Sbjct: 248 DIEEQKNGKQRIIVHEIPYMVNKANLISRIADLARNKEIDGITDVNDETDRDGMRIVIDV 307 Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376 R ++++ +++ ++ M+T F NM + G P+++ L IL+ +L H+ +V+ RR+ Sbjct: 308 RRDASAEVILNNLYKMTLMQTTFNFNMLAIVNG-APKILSLKQILQYYLEHQEDVVRRRT 366 Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAILN 433 F ++ R+ I++GL IA +IDEII IIR K ++ + L++ Q AIL+ Sbjct: 367 EFDLKKAQSRLHIVEGLRIALDHIDEIINIIRQSQTSEVAKGELMGNYGLSDRQAQAILD 426 Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493 +RL L LE +I++E L +L + +++ NQI + E+ EI K D Sbjct: 427 MRLVRLTGLEREKIEAEYKKLTEAIADYKDIL-AHRERINQIIYD--ELMEIQKKFGD-- 481 Query: 494 RRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSL-----KSH---SVDLSALH 544 +RRT E+ D ++ + +IE++ I V +++ G+I+ L KS + + Sbjct: 482 KRRT---ELQVGDITNIEDEDLIEEQDIIVTLTHNGYIKRLPVDEFKSQHRGGRGVKGMG 538 Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575 D ++ + + T D +L + GK Y++ Sbjct: 539 VHNDDFIEQLISSSTHDLLLFFTNSGKVYSM 569 >gi|251782323|ref|YP_002996625.1| DNA gyrase subunit A [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242390952|dbj|BAH81411.1| DNA gyrase subunit A [Streptococcus dysgalactiae subsp. equisimilis GGS_124] Length = 834 Score = 398 bits (1023), Expect = e-108, Method: Compositional matrix adjust. Identities = 225/580 (38%), Positives = 356/580 (61%), Gaps = 26/580 (4%) Query: 12 LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71 + + N+ V+L ++ ++ YA+S I RA+PD+RDG KPVHRRI++ M+E+G+ Sbjct: 1 MQDRNLIDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVMPDKP 60 Query: 72 FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131 KKSARI G+V+GK HPHGD S+Y+++VR+AQ + R+ L+ G GNFG++DGD AAA RY Sbjct: 61 HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRY 120 Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191 TEARM+++A +L+ ++++ VDF+D Y+ + EP+V P++FPNLL NG +GIAVGMAT+I Sbjct: 121 TEARMSKIALELLRDINKNTVDFQDNYDGSEREPLVLPARFPNLLVNGATGIAVGMATNI 180 Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251 P HN+ E +A +++NP+ + L+E I GPDFPTG +++ R I +Y G+G Sbjct: 181 PPHNLAESIDAVKMVMENPDCTTRDLMEVIPGPDFPTGALVM-GRSGIHRAYDTGKGSIV 239 Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVR 310 +R+R +E G IVVTE PY V K+++ E I L KRI + +RDES+ E VR Sbjct: 240 LRSRTEIETTKTGRERIVVTEFPYGVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGVR 299 Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370 V+ + R ++++ ++F L+ ++T F NM + G VP+++ L I+ +++H++E Sbjct: 300 FVIEIR-RDASANVILNNLFKLTSLQTNFSFNMLAIENG-VPKILSLRQIIDNYISHQKE 357 Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQ 427 V+ RR+ F + R IL+GLLIA ++DE+IAIIRN + + ++SRF+L+E Q Sbjct: 358 VITRRTQFDKNKAEARAHILEGLLIALDHLDEVIAIIRNSETDVIAQAELMSRFNLSERQ 417 Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487 AIL++RLR L LE +I+SE D LLA + +L ++ I E+ E+K ++ Sbjct: 418 SQAILDMRLRRLTGLERDKIQSEYDELLALIADLADILAKPERVVTIIKEEMDEIKRKYA 477 Query: 488 KSTDLGRRRTTFC--EVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHS 537 S RRT EV + + +IE+E + + +SN+G+I+ L K Sbjct: 478 NS-----RRTELMIGEVL----SLEDEDLIEEEDVLITLSNKGYIKRLAQDEFRAQKRGG 528 Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPA 577 + + D ++ + T D +L + G+ Y L A Sbjct: 529 RGVQGTGVNDDDFVRELVSTSTHDTLLFFTNFGRVYRLKA 568 >gi|313159353|gb|EFR58717.1| DNA gyrase, A subunit [Alistipes sp. HGB5] Length = 851 Score = 398 bits (1023), Expect = e-108, Method: Compositional matrix adjust. Identities = 230/606 (37%), Positives = 364/606 (60%), Gaps = 33/606 (5%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS-EMGLDFGAAFKKSARI 78 +++ ++ Y+ Y++S I RA+PD+RDG KPVHRRI++ MS E+ L +KSARI Sbjct: 18 INIEEQMKSAYIDYSMSVIVSRALPDVRDGMKPVHRRILYDMSAELNLYSDKPTRKSARI 77 Query: 79 VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138 VG+V+GK HPHGD SVYD++VRLAQ + RYPL+ GQGNFG++DGDS AA RYTEARM + Sbjct: 78 VGDVLGKFHPHGDTSVYDAMVRLAQDWSMRYPLVDGQGNFGSMDGDSPAAMRYTEARMKK 137 Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198 + + ++ +D++ VD+ +++ EP V P+K P L+ NG SGIAVGMAT++ HN+ E Sbjct: 138 ITDEVMADIDKETVDWTLNFDDTIPEPTVLPTKIPLLIVNGASGIAVGMATNMAPHNLSE 197 Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258 + +A A IDNPEI+ E++L+YI GPDFPTGGII E + E+ GRG +RA+ + Sbjct: 198 VVDACCAYIDNPEITGEEMLQYIKGPDFPTGGIIY-GYEGVREAMLTGRGRVMMRAKTDI 256 Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKN 317 E G CIV+TEIPY + K+ +I+KIA++I K+I + I DES + +RI++ K+ Sbjct: 257 EHTPSGRECIVITEIPYMINKAEMIKKIADMINEKKIEGISYINDESDRNGLRIIIILKH 316 Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377 ++ +++ ++F + ++T F +N L GR PQ++P+ ++K ++ HR +V+ RR+ Sbjct: 317 DAV-ASVVLNTLFKNTPLQTSFAVNNIALVNGR-PQMLPMRDLVKHFVDHRHDVVVRRAR 374 Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVDAILNL 434 F ++ + R+ I++GLLIA NIDEI+ IIR+ P K M+ RF+L++ Q AI+ + Sbjct: 375 FDLKKAEERLHIVQGLLIAQDNIDEIVHIIRSSQTPDAAKQTMIERFNLSDIQASAIIEM 434 Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494 RLR+L LE ++ +E D L + + +L + Q I E+ E+KE + Sbjct: 435 RLRALTGLEYGKLIAERDELTKQIAYLKEVLENVGMQMQIIKDELLEIKEKYGDE----- 489 Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFK 546 RR+ E+ + + + + + + IS+ G+I R+ V + Sbjct: 490 RRS---EIVYSSEEFNPEDFYADDDMVITISHMGYIKRTPLAEYRTQNRGGVGAKGSATR 546 Query: 547 EGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD 601 + D ++ A + +L + G K Y +P G S G AIQ +I + + D Sbjct: 547 DEDFIEHIYVASMHNTMLFFTEKGRCFWLKVYEIPEGARSS---KGRAIQNVIQIEPD-D 602 Query: 602 IVTAFV 607 V A++ Sbjct: 603 KVRAYI 608 >gi|83942520|ref|ZP_00954981.1| DNA gyrase subunit A [Sulfitobacter sp. EE-36] gi|83846613|gb|EAP84489.1| DNA gyrase subunit A [Sulfitobacter sp. EE-36] Length = 918 Score = 398 bits (1023), Expect = e-108, Method: Compositional matrix adjust. Identities = 232/603 (38%), Positives = 355/603 (58%), Gaps = 49/603 (8%) Query: 19 AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78 +V++ + YL YA+S I RAIPDLRDG KPVHRRII++M E G+ A++KSA+ Sbjct: 25 SVNIEHEMRTSYLDYAMSVIVSRAIPDLRDGLKPVHRRIIYSMYEKGITHEKAYRKSAKS 84 Query: 79 VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138 VG+V+G HPHGD ++YD+LVR+AQ F PLI GQGNFG++DGDSAAA RYTE+R+ + Sbjct: 85 VGDVMGSYHPHGDSAIYDALVRMAQDFSMSLPLIDGQGNFGSMDGDSAAAMRYTESRLDK 144 Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198 VA + +D++ VDF D Y+ ++ EP V P++FPN+L NG GIAVGMAT+IP HN+ E Sbjct: 145 VASFMTGDLDKETVDFIDNYDGKEREPTVLPARFPNMLVNGAGGIAVGMATNIPPHNLGE 204 Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258 + +A ALI+NP+++ E+L+EYI GPDFPTGGI++ R ++Y GRG +RA+ V Sbjct: 205 VIDACQALIENPDLTSEELIEYIPGPDFPTGGIML-GRSGARKAYLEGRGSVIMRAKTRV 263 Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKN 317 EE+ + + IV+ EI YQV KS +IEKIAE + K+I + ++DES + VR+V+ K Sbjct: 264 EEIRKDRFAIVIDEICYQVNKSTMIEKIAEQVREKKIDGIAHVQDESDRNGVRVVIELK- 322 Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377 R +++M ++ + M+T F NM L+ GR P+ + L L ++ R +V+ RR++ Sbjct: 323 RDATAEVVMNQLYRFTPMQTYFGCNMLALNGGR-PEQLTLRKFLTSFIDFREDVVARRTA 381 Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE----DKPKPVMVSR------------- 420 + ++ R IL GL +A NIDE++A IR+ + + +M R Sbjct: 382 YLLRKARERSHILCGLAVAVTNIDEVVATIRSSADAAEAREKLMTRRWPAEQILQYIALI 441 Query: 421 ------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSG 468 ++L+E Q AIL LRL+ L ++ ++ EL+ L + ++ +L S Sbjct: 442 DDPTHTANDDGTYNLSEAQARAILELRLQRLTQIGVKEVTDELEELAKKIKEYLEILGSR 501 Query: 469 KQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRG 528 ++ I+ E+ EVK+ F+ RRT + S + +I +E + V +++ G Sbjct: 502 ERIMGIISDELAEVKDQFAVP-----RRTEIVDWS---GDMDDEDLIAREDMVVTVTSGG 553 Query: 529 WI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL 580 +I RS + +S + KE D + A+T ++L +TDG Y L L Sbjct: 554 YIKRTPLVDFRSQRRGGKGVSGMQTKEEDVVTTLFVANTHTQLLFFTTDGMVYKLKTWRL 613 Query: 581 LSG 583 G Sbjct: 614 PQG 616 >gi|119505049|ref|ZP_01627125.1| DNA gyrase subunit A [marine gamma proteobacterium HTCC2080] gi|119459031|gb|EAW40130.1| DNA gyrase subunit A [marine gamma proteobacterium HTCC2080] Length = 876 Score = 398 bits (1023), Expect = e-108, Method: Compositional matrix adjust. Identities = 273/778 (35%), Positives = 407/778 (52%), Gaps = 113/778 (14%) Query: 13 VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72 + V V++ L++ Y+ YA+S I RA+PD+RDG KPVHRR++ AM+E+ D+ A+ Sbjct: 8 IAREVLPVNIEDELKQSYMEYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELNNDWNKAY 67 Query: 73 KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132 KKSARIVG+VIGK HPHGD +VYD++VR+AQ F RY L+ GQGNFG+IDGDSAAA RYT Sbjct: 68 KKSARIVGDVIGKYHPHGDSAVYDTIVRMAQDFSLRYTLVDGQGNFGSIDGDSAAAMRYT 127 Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192 E RM+++A +L +D++ VDF D Y+ + PVV P++ PNLL NG+SGIAVGMAT+IP Sbjct: 128 EIRMSKLAHALLADLDKETVDFVDNYDGSEQIPVVLPTRAPNLLINGSSGIAVGMATNIP 187 Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252 HN++E+ LA IDNPEI ++ L+EYI GPDFPTG II R IV++YR GRG V Sbjct: 188 PHNLREVVAGCLAFIDNPEIDVDGLMEYIPGPDFPTGAII-NGRAGIVQAYRTGRGRIYV 246 Query: 253 RARW-CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311 RAR + + RG I++ EIPYQ+ K+RLIE+IAEL+ K++ + ++RDES +D Sbjct: 247 RARAEVITDESRGKDTIIIHEIPYQLNKARLIERIAELVKEKKLEGITELRDESDKDGLR 306 Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371 V+ R D+++ +++ + +++ +NM L G+ P+ + L +++ ++ HRREV Sbjct: 307 VVIELRRGEMGDVVLNNLYAQTQLQSVVGINMVALVDGQ-PRTLNLLEMIEAFVRHRREV 365 Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAII------------------------ 407 + RR+ + ++ R +L+GL IA +NIDEII +I Sbjct: 366 VTRRTVYLLRKARERGHVLEGLAIALVNIDEIIELIKTSPTPADAKAGLVAKPWQSGEVT 425 Query: 408 -----------RNEDKPKPVMV--SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNL 454 R +D PK + S + L+ Q AIL LRL L LE ++ E + Sbjct: 426 GMLERAGEDACRPDDLPKEFGLHGSEYFLSPAQAQAILELRLHRLTGLEHEKLLQEYSDK 485 Query: 455 LAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAM 514 L E +L + I E++E+ E F G R T E++ + + + Sbjct: 486 LVEIAGYLEILQDPDRLRQVIRDELKELVEEF------GDDRLT--EITDSTHDLSVEDL 537 Query: 515 IEKEPITVVISNRGWIR--SLKSHSVD------LSALHFKEGDSLKIALHAHTTDRILLL 566 I +E V IS+ G+ + SL + SA K+ D ++ L A T IL Sbjct: 538 ITEEDRVVTISHGGYAKTQSLSDYQAQRRGGTGRSATAVKDEDFVEHLLIASTHATILCF 597 Query: 567 STDGKAYTL---------------PAGNLL--------------SGRGHGEAIQL----- 592 S GK Y L P NLL G G I + Sbjct: 598 SDLGKVYWLKVFHIPLASRNARGRPMVNLLPLDEGERITSILPVEGYEEGHFIFMATARG 657 Query: 593 -------------------LIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEI-- 631 ++L + +V V D +C ++++SS+G A +E + Sbjct: 658 IVKKTDMQQFARQRSVGLRALELEADDWLVGTAVTDGSCDVMLLSSEGKAVRFQEQAVRA 717 Query: 632 IANTRKGKTFLKVSSEEKM-KLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRG-KGV 687 + T +G +K+ E ++ L+V + V E ++ P RG KGV Sbjct: 718 MGRTARGVRGIKLGDEHRLISLIVPQADSTILTVSEKGYGKRTDTEEFPCKGRGTKGV 775 >gi|305677638|pdb|2XKK|A Chain A, Crystal Structure Of Moxifloxacin, Dna, And A. Baumannii Topo Iv (Pare-Parc Fusion Truncate) gi|305677639|pdb|2XKK|C Chain C, Crystal Structure Of Moxifloxacin, Dna, And A. Baumannii Topo Iv (Pare-Parc Fusion Truncate) Length = 767 Score = 398 bits (1023), Expect = e-108, Method: Compositional matrix adjust. Identities = 202/463 (43%), Positives = 306/463 (66%), Gaps = 8/463 (1%) Query: 27 EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86 E+ YL YA+ I +RA+P + DG KPV RRI++AMSE+GL KKSAR VG+V+GK Sbjct: 283 EQAYLNYAMYVIMDRALPHISDGLKPVQRRIVYAMSELGLKSSGKPKKSARTVGDVLGKY 342 Query: 87 HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMTQVAELILQ 145 HPHGD + Y+++V +AQPF RYPLI GQGN+G+ D S AA R TEA+++ +EL+L Sbjct: 343 HPHGDSACYEAMVLMAQPFSYRYPLIEGQGNWGSPDDPKSFAAMRXTEAKLSAYSELLLS 402 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 + + +++D ++ EP+ P++ PN+L NGT+GIAVGMAT IP HN++E+ + +A Sbjct: 403 ELGQGTSEWQDNFDGSLKEPITLPARVPNILLNGTTGIAVGMATDIPPHNLREVVKGTIA 462 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265 LI NP+ S EKL EYI PD PT I+ E +++ GRG +R+RA + +E+ Sbjct: 463 LIRNPQTSDEKLAEYIPAPDLPTKAEIITPPEELLKIQTTGRGSYRMRAVYTIEKNE--- 519 Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFPKNRSLDPD 323 IV+TE+PYQV S++I +IA+ + AK++PL+ D+RDES + R+V+ ++ +D + Sbjct: 520 --IVITELPYQVSGSKVITQIADQMQAKKLPLVVDVRDESDHENPTRLVIVLRSNRIDAE 577 Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383 +M +F +D+E+ + +N+N++ PQV + IL EW+ R++ + RR + + I Sbjct: 578 AVMSHLFATTDLESSYRVNLNMIGEDGRPQVKSIRRILLEWIEIRKKTVTRRLQYHLNRI 637 Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLE 443 ++R+ IL GLLIAYL+ID +I IIR ED+PKPV++ F++ E Q +AIL L+LR L KLE Sbjct: 638 EKRLHILAGLLIAYLDIDTVIRIIREEDQPKPVLMEHFNIDEIQAEAILELKLRHLAKLE 697 Query: 444 EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486 E +I+ E D L A+ I L + + N I E++E + F Sbjct: 698 EMEIRHEQDELSAKAAIIREQLENPESLKNLIISELKEDAKKF 740 >gi|75909066|ref|YP_323362.1| DNA topoisomerase IV subunit A [Anabaena variabilis ATCC 29413] gi|75702791|gb|ABA22467.1| DNA topoisomerase IV subunit A [Anabaena variabilis ATCC 29413] Length = 835 Score = 398 bits (1023), Expect = e-108, Method: Compositional matrix adjust. Identities = 256/719 (35%), Positives = 400/719 (55%), Gaps = 39/719 (5%) Query: 10 NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69 N L V +L ++ YL YA+S I RA+PD+RDG KPVHRRI++AM E+GL Sbjct: 6 NLLSTGQVITTALHTEMQRSYLEYAMSVIVGRALPDVRDGLKPVHRRILYAMHELGLTPD 65 Query: 70 AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129 ++K AR+VG+V+GK HPHGDQ+VYD+LVRL Q F RYPL+ G GNFG++D D AA Sbjct: 66 RPYRKCARVVGDVLGKYHPHGDQAVYDALVRLVQDFSSRYPLLGGHGNFGSVDNDPPAAM 125 Query: 130 RYTEARMTQVA-ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188 RYTE R+ ++ E +L + E+ V+F ++ EP V P++ P LL NG SGIAVGMA Sbjct: 126 RYTETRLAPISHEGMLTEIGEETVEFVGNFDNSQQEPTVLPAQLPFLLLNGCSGIAVGMA 185 Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248 T+IP HN+ EI + +ALID P+++ EKLLE I GPDFPTGG IV I E+Y G+G Sbjct: 186 TNIPPHNLGEIVDGLIALIDQPDLADEKLLELIPGPDFPTGGEIV-GETGIREAYITGKG 244 Query: 249 GFRVRARWCVEEV--GRGS---WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303 G +R VEE+ GRGS I+VTE+PYQV K+ IEK+AEL+ R+ + D+RD Sbjct: 245 GIVLRGVATVEEIPGGRGSKRRMAIIVTELPYQVNKAGWIEKVAELVNQGRLQGISDLRD 304 Query: 304 ES-AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362 ES E +R+V+ K R +P +++ ++ + ++T F + + G+ P+ + L +L+ Sbjct: 305 ESDREGMRVVIELK-RDTNPQEVLQHLYHQTALQTNFGAILLAIVEGQ-PRQLSLRQLLQ 362 Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVS 419 E+L R L RR S+ + R+ ++GLL A N+DE+I I+R K + S Sbjct: 363 EFLNFREHTLNRRYSYELGKAASRLNTVEGLLKALSNLDEVIEILRQAPDGSTAKVTLCS 422 Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479 + L+E+Q DAIL++ LR L LE+ ++ E L + +D LL+ K+ + ++ Sbjct: 423 QLDLSEDQADAILSMPLRRLTSLEQQNLQREFGELSEQITLLDRLLSDRKELLKALKKDL 482 Query: 480 REVKEIFS--KSTDLG----------RRRTTFCEVSRADKATLQQAMIE-KEPITVVISN 526 R +K + + T LG ++ ++ D+ T + +E E + I++ Sbjct: 483 RSLKRKYGDPRRTKLGAKSLEELPKNKKADKHNSSAKTDEDTENLSPLEPAEEAILEITH 542 Query: 527 RGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL-----L 581 RG++R ++ E D + T +L+L+ GK Y + G++ Sbjct: 543 RGYLRRIQPGKKSKVENGLLEHDFIIQTNITDTHKELLVLTNGGKLYPVKVGDIPLTTGR 602 Query: 582 SGRGHGEAIQLLIDLNHNQDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANTRK 637 S RG L NQ+ V + + + +L++++ +G + E+ TR+ Sbjct: 603 SPRGTPLITMLTTTAQGNQEPVVSRLLLPENLAAQQLILLTKQGRIKRLSLEELTNLTRR 662 Query: 638 GKTFLKVSSEEKMKLV-VKVTGDHVAVVGENRKLLIFSID--QIPEMSRGKGVRLQSYK 693 G T LK+ ++++ L G H+ + +LL FS + Q+P M R + LQ+++ Sbjct: 663 GVTILKLKDDDELLLTQFSKAGQHLILASSGGRLLRFSANDEQLPIMGR-TAMGLQAFR 720 >gi|257051221|ref|YP_003129054.1| DNA gyrase, A subunit [Halorhabdus utahensis DSM 12940] gi|256689984|gb|ACV10321.1| DNA gyrase, A subunit [Halorhabdus utahensis DSM 12940] Length = 823 Score = 398 bits (1023), Expect = e-108, Method: Compositional matrix adjust. Identities = 234/607 (38%), Positives = 366/607 (60%), Gaps = 26/607 (4%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 V+ V + +E+ Y+ YA+S I RA+PD+RDG KPVHRRI++AM EMG+ G++ +KS+ Sbjct: 18 VEHVRIEDEMEQSYIDYAMSVIAGRALPDVRDGLKPVHRRILYAMHEMGVSSGSSHRKSS 77 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 +VGEV+G HPHGD ++YD+LVR+AQ F RYPL+ GQGNFG++DGD AAA RYTEARM Sbjct: 78 SVVGEVMGDYHPHGDSAIYDTLVRMAQDFSMRYPLVDGQGNFGSMDGDPAAAMRYTEARM 137 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 +AE +L +++D VDF+ Y++ EP V PS FPNLL NG+SGIAVGM+T+IP HN+ Sbjct: 138 APIAEELLADIEKDTVDFQANYDDRLEEPEVLPSAFPNLLVNGSSGIAVGMSTNIPPHNL 197 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ +A + LIDNP+ + L+EY+ GPDFPTG IV + +I +Y GRG VRA + Sbjct: 198 GEVIDATIHLIDNPDAEVTDLMEYVKGPDFPTGANIV-GKNAIHAAYATGRGRLTVRAEY 256 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFP 315 EE G IV+TEIP+Q K+R++E+IA+ + I + D+RDES D VR+V+ Sbjct: 257 EFEETDSGRPRIVITEIPFQENKARMVERIADDVNEGIIEGVSDLRDESDRDGVRVVIEC 316 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 K R + D++ E+ + +E+ F + +N+ + P+V+ L L+E++AHR+EV+ RR Sbjct: 317 K-RGANVDVV-ENQLLDHHLESTFGV-INLALVDGEPRVLTLKETLEEYVAHRKEVVRRR 373 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAIL 432 S F + + R IL+G L A N+D ++ +IR+ D+ K + F + Q I+ Sbjct: 374 SEFDLAEAEDRAHILEGRLKALGNVDSVVDLIRDSEDRDEAKAALEETFDFSTEQAQHIV 433 Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492 ++L SL +E +++ E + + AE E+++++LN + + I E+R VK+ + Sbjct: 434 RMQLGSLTSMEAAEVEDEYEEVEAEIERLETILNDESELLDVIKDELRAVKDEYDDD--- 490 Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD--------LSALH 544 RRT+ E D ++ +I +E VV++ +I+ + + D + Sbjct: 491 --RRTSIVE---DDGTVTREDLIPEEECLVVVTEDDYIKRMPADRFDAQHRGGKGIIGAD 545 Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDI 602 KEGD + A+T D +L + G+ Y L + +S G++ LI+ + ++I Sbjct: 546 PKEGDRVSTVFRANTHDYLLAFTNHGQVYRLRTYEIPEMSRTARGKSAVNLINFDDGEEI 605 Query: 603 VTAFVYD 609 D Sbjct: 606 TAVVSMD 612 >gi|116326861|ref|YP_796581.1| DNA gyrase subunit A [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116329808|ref|YP_799526.1| DNA gyrase subunit A [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|116119605|gb|ABJ77648.1| DNA gyrase subunit A [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116123497|gb|ABJ74768.1| DNA gyrase subunit A [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 832 Score = 398 bits (1022), Expect = e-108, Method: Compositional matrix adjust. Identities = 247/658 (37%), Positives = 383/658 (58%), Gaps = 40/658 (6%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 V + ++E YL YA+S I RA+PD+RDG KPVHRRI+HAM+E + K A+IV Sbjct: 33 VEIEDQMKEAYLGYAMSVIVGRALPDVRDGLKPVHRRILHAMNERAWRSDRPYVKCAKIV 92 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 GEVIG HPHGD SVY++LVR+ Q F R PLI GQGNFG+IDGD+ AAYRYTEAR+ +V Sbjct: 93 GEVIGNYHPHGDASVYEALVRMVQDFSLRVPLIDGQGNFGSIDGDNPAAYRYTEARLEKV 152 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 AE +L+ ++++ V F Y++ +P V P+ FPNLL NG+SGIAVGMAT+IP HN++E Sbjct: 153 AEELLRDIEKETVSFSPNYDDTKQQPDVLPANFPNLLVNGSSGIAVGMATNIPPHNLKET 212 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 +A +A+I NPEI+I ++L I GPDFPT I+ E ++ +Y G+G R+R++ +E Sbjct: 213 IDAVIAVIRNPEITIPEILRIIPGPDFPT-SGIIIGGEGLISAYTTGKGSIRIRSKVEIE 271 Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFPKNR 318 E G IVVTEIPYQV K L+EKI +++ K+I + +I D S + +RI + K + Sbjct: 272 EKKNGREVIVVTEIPYQVNKKVLLEKIGDIVNEKQIEGISEILDLSDRKGIRIEIHIK-K 330 Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378 + +++ ++ ++ ++ + + M + + P++ + IL + AHRR+V+ +R+ F Sbjct: 331 DANAQVILNQLYKMTQLQVSYGITMLAI-LDNKPKIFNIKEILTAYSAHRRDVIVKRTQF 389 Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVDAILNLR 435 + ++R IL+GL IA NI+++I +IR P K ++ RFSL+E Q DAIL +R Sbjct: 390 DLDKAEKRAHILEGLKIALENIEDVIKVIRASKNPPEAKQQLMVRFSLSEVQSDAILEMR 449 Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC-EIREVKEIFSKSTDLGR 494 L+ L LE +I EL+ + + +L + + N I C E++EV + + + Sbjct: 450 LQRLTSLEVQKIIDELEEVRKLIVDLKDIL-AKPSRINDIVCTELQEVGDKYGT-----K 503 Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSVDLSALHFK 546 R+T S + + +I E + + I+ +I+ L K + L K Sbjct: 504 RKTEISIESIESSSFNAEDLIADEEMVIQITYDQFIKRLPIDTFKRQKRGGKGIQGLSQK 563 Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVT 604 D +KI A T D I+ S GK Y + A L S G++++ +I+L ++ + + Sbjct: 564 RDDVIKIMKAAMTHDSIMFFSNIGKVYVMKAYELPIASKEARGKSLKAIINLREDEYVSS 623 Query: 605 AFVY---DSTCKLLVVSSKGNAFI----------VEESEIIA-NTRKGKTFLKVSSEE 648 F + D LL+V+ +G FI V++S IIA R+G +KV + E Sbjct: 624 IFTFRGQDMDKDLLLVTKRG--FIKRIQLKEFGNVKKSGIIAIGLREGDELIKVEAIE 679 >gi|325297763|ref|YP_004257680.1| DNA gyrase, A subunit [Bacteroides salanitronis DSM 18170] gi|324317316|gb|ADY35207.1| DNA gyrase, A subunit [Bacteroides salanitronis DSM 18170] Length = 843 Score = 398 bits (1022), Expect = e-108, Method: Compositional matrix adjust. Identities = 264/778 (33%), Positives = 422/778 (54%), Gaps = 63/778 (8%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 ++ + +++ +++ Y+ Y++S I RA+PD+RDGFKPVHRRI++ M E+G +K Sbjct: 4 QDRIIKINIEEEMKKSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMMELGNTSDKPYK 63 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 K+ARIVGEV+GK HPHGD SVY +LVR+AQ + RYPL+ GQGNFG+IDGDS AA RYTE Sbjct: 64 KAARIVGEVLGKYHPHGDSSVYGALVRMAQDWAMRYPLVDGQGNFGSIDGDSPAAMRYTE 123 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 AR+ ++ E ++Q + ++ VDF + +++ EP V P++ PNLL NG SGIAVGMAT++P+ Sbjct: 124 ARLKKIGEDMMQDLYKETVDFTNNFDDTLQEPTVMPTRIPNLLVNGASGIAVGMATNMPT 183 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E+ +A +A IDN +I + L++YI PDFPTGG I + E+Y GRG +R Sbjct: 184 HNLSEVIDACVAYIDNSDIDTDGLMQYIKAPDFPTGGYIY-GVSGVREAYETGRGRIVMR 242 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIV 312 A+ +E I+V EIPY V K LIEKIA L+ K++ + I DE+ E +RIV Sbjct: 243 AKTEIESHPTHDK-IIVNEIPYNVNKKELIEKIASLVNEKKLDGISYINDETDREGMRIV 301 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 + K R + +++ +F ++++++ F +N L GR P+++ L +++ ++ HR EV+ Sbjct: 302 IDVK-RDANASVVLNKLFKMTELQSSFNVNNIALVHGR-PRLLSLKDLIRLFVEHRHEVV 359 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVD 429 RR+ F ++ R IL+GL+IA NIDE+I IIR P ++ RF LTE Q Sbjct: 360 IRRTKFDLRKAKERAHILEGLIIASDNIDEVIRIIRAAKTPNEAVTNLMDRFQLTEVQAR 419 Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489 AI+ +RLR L L + Q+ +E + L+ + + +L++ + I E+ EVKE + Sbjct: 420 AIVEMRLRQLTGLLQEQLHAEYEELMKQIAYYEEILSNEELCKKVIKDELLEVKEKYGD- 478 Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLS 541 +RR+ E+ + + + + + + IS+ G+I R+ V Sbjct: 479 ----KRRS---EIVYSSEEFNPEDFYADDEMVITISHLGYIKRTPLSDFRTQHRGGVGAK 531 Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL-----PAGNLLSGRGHGEAIQLLIDL 596 ++ D ++ A + +L + GK Y L P GN S G AIQ L+++ Sbjct: 532 GSETRDEDFIEHIYPATMHNTLLFFTQKGKCYWLKVYEIPEGNRTS---KGRAIQNLLNI 588 Query: 597 NHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG---KTFLKVSSEEKMKLV 653 + D VTA+ L V + + V ++ T+ G KT L+ S + V Sbjct: 589 EAD-DKVTAY--------LRVKNLNDTEFVNSHYVLFCTKNGVIKKTVLEQYSRPRQNGV 639 Query: 654 VKVT--------------GDH-VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGI 697 +T GD+ + + N + + F+ + EM R GVR + + G Sbjct: 640 NAITIREDDRVIEVRMTKGDNDIVIANRNGRAIRFNETAVREMGRTATGVRGITLDEDGQ 699 Query: 698 SDV---ICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752 +V IC K + T + + Y + + RGG G ++GK ++ Sbjct: 700 DEVVGMICIKDPQKETIMVISEHGYGKRSDIEDYRKTNRGGKGVKTLNITEKTGKLVA 757 >gi|330995639|ref|ZP_08319537.1| DNA gyrase, A subunit [Paraprevotella xylaniphila YIT 11841] gi|329574698|gb|EGG56259.1| DNA gyrase, A subunit [Paraprevotella xylaniphila YIT 11841] Length = 855 Score = 398 bits (1022), Expect = e-108, Method: Compositional matrix adjust. Identities = 228/608 (37%), Positives = 359/608 (59%), Gaps = 32/608 (5%) Query: 12 LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71 L ++ + V++ + + Y+ Y++S I RA+PD+RDGFKPVHRRI++ M E+G Sbjct: 2 LDQDRIIKVNIETEMRKSYIDYSMSVIVSRALPDVRDGFKPVHRRILYGMRELGNTHDKP 61 Query: 72 FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131 +KK ARIVGEV+GK HPHGD SVY +LVR+AQ + RY L+ GQGNFG++DGDSAAA RY Sbjct: 62 YKKCARIVGEVLGKYHPHGDSSVYGALVRMAQEWSMRYTLVDGQGNFGSVDGDSAAAMRY 121 Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191 TEAR+ + E ++ ++++ VD + +++ EP V P+K PNLL NG SGIAVGMAT+I Sbjct: 122 TEARLQLMGEAMMDDLEKETVDMMNNFDDTLREPTVMPTKIPNLLVNGASGIAVGMATNI 181 Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251 P+HN+ E+ +A +A IDN +I I+ L+E++ PDFPTGG I + + E+Y GRG Sbjct: 182 PTHNLGEVIDACVAYIDNRDIDIDGLMEHVKAPDFPTGGFIY-GMQGVREAYETGRGRVV 240 Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVR 310 +RAR +E G IV+TEIPY V K+ LI++IA+L+ K+I + + DES E +R Sbjct: 241 MRARAEIEP-GENHDKIVITEIPYGVNKAELIKQIADLVNEKKIEGISNANDESDREGMR 299 Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370 IV+ K R + ++++ +F ++ ++T F +N L GR P+++ L + ++ HR + Sbjct: 300 IVVDVK-RDANANVVLNKLFKMTPLQTSFSVNCIALVKGR-PRLLSLKDCISNFVNHRHD 357 Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQ 427 V+ RR+ + ++ + R IL+GL+IA NIDE++ IIR+ P+ ++SRF L E Q Sbjct: 358 VVIRRTQYDLRKAEERAHILQGLIIASDNIDEVVHIIRSAQNPQAAIEGLMSRFELDEVQ 417 Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487 AI+ +RLR L L + Q+++E D LL + E +L+ I E+ EVKE F Sbjct: 418 AKAIVEMRLRQLTNLMQEQLRNEYDELLKQIEYFKQILSDEDLCMKVIKDELIEVKEQFG 477 Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVD 539 RR+ E+ + + + + + + IS+ G+I R+ V Sbjct: 478 DE-----RRS---EIVYSSEEFNPEDFYADDEMVITISHMGYIKRTPLAEFRAQARGGVG 529 Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLI 594 ++ D ++ A + +L + G K Y +P G + G AIQ ++ Sbjct: 530 SKGTSTRDTDFVEYIYPATMHNTMLFFTQKGRCFWMKVYEIPEG---AKNSKGRAIQNML 586 Query: 595 DLNHNQDI 602 +++ + I Sbjct: 587 NIDPDDAI 594 >gi|311087076|gb|ADP67156.1| DNA gyrase subunit A [Buchnera aphidicola str. JF99 (Acyrthosiphon pisum)] Length = 830 Score = 398 bits (1022), Expect = e-108, Method: Compositional matrix adjust. Identities = 234/590 (39%), Positives = 358/590 (60%), Gaps = 44/590 (7%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 V++ L+ YL Y++S I RA+PD+RDG KPVHRRI+ AM + D+ A+KKSARIV Sbjct: 11 VNIEEELKSSYLDYSMSVIVGRALPDVRDGLKPVHRRILFAMYILNNDWNKAYKKSARIV 70 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGD +VYD++VR+AQ F RY LI GQGNFG++DGDSAAA RYTE RM+++ Sbjct: 71 GDVIGKYHPHGDSAVYDAIVRMAQKFSLRYMLIDGQGNFGSVDGDSAAAMRYTEVRMSKI 130 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A +L ++++ V+F Y+ + P + P+K PNLL NG+SGIAVGMAT+IP HN+ E+ Sbjct: 131 AHELLNDLEKNTVEFLPNYDGTEYIPEILPAKIPNLLINGSSGIAVGMATNIPPHNLNEV 190 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV- 258 LA IDN +I++E+L+++I GPDFPT II + I E+YR G+G +RA+ + Sbjct: 191 INGCLAYIDNNDITLEELIKHIPGPDFPTAAII-NGKSGIEEAYRTGKGKIYIRAQNQIE 249 Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKN 317 + IV EIPYQV KSRLIEKIAEL+ KRI + +RDES +D +RIV+ K Sbjct: 250 KNKKNKKESIVFNEIPYQVNKSRLIEKIAELVKEKRIDGITALRDESDKDGMRIVIEIKR 309 Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377 ++ ++++ ++ L+ ++ F +NM L G+ P+ + L ILK +L+HR+E++ RRS Sbjct: 310 EAI-AEVILNQLYSLTQLQISFGINMVALCQGQ-PKTLSLKEILKNFLSHRQEIIIRRSL 367 Query: 378 FRMQAIDRRVEILKGLLIAYL--------------NIDEIIAIIRNEDKPKPVMV----S 419 F + + R+ IL+GL +A + +ID II+ K + + Sbjct: 368 FELNKVRNRIHILEGLNMALININAIIEIIKNSVNSIDAKKIIIQKNWKSEKINYLAKKH 427 Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479 + +E QV AIL+LRL + LE+ +I E ++L+ + +++ +L + K+ + I E+ Sbjct: 428 EYYFSEKQVQAILDLRLHKITNLEQEKIIMEHNDLIKKTKELKEILENPKKMFEVIKSEL 487 Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHS 537 ++ FS +RRT E + +D + +I +E + V +S+ G+++ L ++ Sbjct: 488 LSIQNNFS-----DKRRTKITE-NHSD--INMEDLINQEDVVVTLSHSGYVKYQPLSDYN 539 Query: 538 VDL------SALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLP 576 SA KE D ++ + A+T D IL S+ G K Y LP Sbjct: 540 AQRRGGKGKSAAKIKEEDFIESLVIANTHDTILCFSSRGILYWMKVYQLP 589 >gi|298491612|ref|YP_003721789.1| DNA gyrase subunit A ['Nostoc azollae' 0708] gi|298233530|gb|ADI64666.1| DNA gyrase, A subunit ['Nostoc azollae' 0708] Length = 835 Score = 398 bits (1022), Expect = e-108, Method: Compositional matrix adjust. Identities = 253/723 (34%), Positives = 400/723 (55%), Gaps = 48/723 (6%) Query: 10 NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69 N L V +L ++ YL YA+S I RA+PD+RDG KPVHRRI++AM E+GL Sbjct: 6 NLLSTGQVITTALHTEMQRSYLEYAMSVIVGRALPDVRDGLKPVHRRILYAMHELGLTPD 65 Query: 70 AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129 ++K AR+VG+V+GK HPHGDQSVYD+LVRL Q F RYPL++G GNFG++D D AA Sbjct: 66 RPYRKCARVVGDVLGKYHPHGDQSVYDALVRLVQEFSSRYPLLAGHGNFGSVDNDPPAAM 125 Query: 130 RYTEARMTQVA-ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188 RYTE R+ V E +L + E+ V+F ++ EP V P++ P LL NG +GIAVGMA Sbjct: 126 RYTETRLAPVGHEGMLTEIGEETVEFIGNFDNSQQEPTVLPAQLPFLLLNGCAGIAVGMA 185 Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248 T+IP HN+ E+ + + LIDNP+++ EKL E I GPDFPTGG IV I E+Y G+G Sbjct: 186 TNIPPHNLGEVVDGLIVLIDNPDLTDEKLFEIIPGPDFPTGGEIV-GNSGIREAYTTGKG 244 Query: 249 GFRVRARWCVEEV--GRGS---WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303 G +R +EE+ +GS I++TE+PYQV K+ IEK+A+L+ R+ + D+RD Sbjct: 245 GIVLRGVATLEEMLPTKGSKRRTAIIITELPYQVNKAGWIEKVADLVNQGRLQGISDLRD 304 Query: 304 ES-AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362 ES E +R+V+ K R +P +++ ++ + ++T F + L G+ P+ + L L+ Sbjct: 305 ESDREGMRVVIELK-RDTNPQEILQHLYHQTALQTTFGAILLALVEGQ-PRQLSLRQTLQ 362 Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVS 419 E+L R L RR S+ + + RV ++ GLL A +DE+IAI+R K + Sbjct: 363 EFLNFREHTLNRRYSYELGKAENRVNLVAGLLKALSKLDEVIAILRQAADGSTAKMNLCR 422 Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479 + L+E Q DAIL++ LR L LE+ ++ E D+L + + LL ++ + ++ Sbjct: 423 QLDLSEVQADAILSMPLRRLTSLEQQNLQQEFDSLNEQITSLRRLLEDRRELLKALKKDL 482 Query: 480 REVKEIFSKSTDLGRRRTTFCEVS----RADKAT----------LQQAMIEKEPITVVI- 524 R +K +S RRT ++ +++K T LQ E+ P ++ Sbjct: 483 RSLKRKYSDP-----RRTKILAINETPIKSEKGTTETEDNPKSKLQTPKSEQPPEEAILE 537 Query: 525 -SNRGWIRSLKSHSVDLSALH-FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582 + RG++R L A + E D + T +L+L+T GK Y + G++ + Sbjct: 538 FTQRGYVRRLSPTGKKPKAENGLHENDFIIQTELTDTEKDLLILNTGGKVYPVKVGDIPA 597 Query: 583 GRGHGEAIQLLIDL------NHNQDIVTAFVYDST---CKLLVVSSKGNAFIVEESEIIA 633 G LI + + + +V FV T ++L+++ +G + E Sbjct: 598 ITGRSPRGTPLITMLTSTAQGNVEGVVNRFVLPETPERSQMLLLTKQGRIKRLSMEEFAN 657 Query: 634 NTRKGKTFLKVSSEEKMKLV-VKVTGDHVAVVGENRKLLIFSID--QIPEMSRGKGVRLQ 690 +R+G T LK+ ++++ TG H+ + + +LL F+++ Q+P M R + LQ Sbjct: 658 LSRRGITILKLKDDDELSFTQFTTTGQHLILASSSGRLLRFAVNEEQLPIMGRA-AMGLQ 716 Query: 691 SYK 693 +++ Sbjct: 717 AFR 719 >gi|167752029|ref|ZP_02424156.1| hypothetical protein ALIPUT_00271 [Alistipes putredinis DSM 17216] gi|167660270|gb|EDS04400.1| hypothetical protein ALIPUT_00271 [Alistipes putredinis DSM 17216] Length = 862 Score = 398 bits (1022), Expect = e-108, Method: Compositional matrix adjust. Identities = 272/790 (34%), Positives = 429/790 (54%), Gaps = 65/790 (8%) Query: 7 SNSNTLVEENVKA--------VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRII 58 S +N L EE A +++ ++ Y+ Y++S I RA+PD+RDG KPVHRRI+ Sbjct: 11 SKNNMLTEEEKNAGLEGKIIPINIEEQMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRIL 70 Query: 59 HAMS-EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGN 117 + MS E+ L +KSARIVG+V+GK HPHGD SVY+++VR+AQ + RYPL+ GQGN Sbjct: 71 YDMSAELNLYSDKPTRKSARIVGDVLGKFHPHGDSSVYEAMVRMAQDWSMRYPLVDGQGN 130 Query: 118 FGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLA 177 FG++DGDS AA RYTEARM ++ + ++ +D+D +D+ +++ EP V P+K P LL Sbjct: 131 FGSMDGDSPAAMRYTEARMQKITDEVMADIDKDTIDWTLNFDDTIPEPTVLPTKIPLLLV 190 Query: 178 NGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRE 237 NG SGIAVGMAT++ HN+ E+ +A A +DNPEI+ E+LL+Y+ GPDFPTGGII E Sbjct: 191 NGASGIAVGMATNMAPHNLGEVIDACCAFVDNPEIACEELLKYVKGPDFPTGGIIY-GYE 249 Query: 238 SIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL 297 + E+ GRG +RAR +E G CIV+TEIPY V K+ +I+KIA+LI K+I Sbjct: 250 GVREALLTGRGRVVMRARTEIEHTASGRECIVITEIPYMVNKAEMIKKIADLINEKKIEG 309 Query: 298 LEDIRDESAED-VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMP 356 + I DES + +RI++ K+ ++ +++ +++ + ++T F +N L GR P ++ Sbjct: 310 ISYINDESDRNGMRIIVILKHDAV-ASVVLNTLYKNTPLQTSFAVNNIALVNGR-PMMLN 367 Query: 357 LDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKP 413 L +++ ++ HR +V+ RR+ F + ++R+ I+ GLLIA NIDEII IIR N D Sbjct: 368 LLDLVQHFVEHRHDVIVRRTRFDLAKAEKRLHIVLGLLIAQDNIDEIIHIIRAAKNPDLA 427 Query: 414 KPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWN 473 K M+ RFSL++ Q AI+ +RLR+L LE ++ +E + L A+ + +L S + Q Sbjct: 428 KQAMMERFSLSDAQASAIIEMRLRALTGLEHDKLVAERNELEAQIAYFNDVLGSRELQMK 487 Query: 474 QIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--- 530 + E+ EVK + RR+ E+ A + + + + + IS+ G+I Sbjct: 488 IVKDELLEVKAKYGDE-----RRS---EIVYASEEFNPEDFYADDEMVITISHLGYIKRT 539 Query: 531 -----RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG-- 583 R+ V ++ D ++ A + +L + G+ Y L + G Sbjct: 540 PLAEYRTQNRGGVGAKGSATRDEDFIEHIYMATMHNTMLFFTEKGRCYWLKVYEIPEGTR 599 Query: 584 RGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG---KT 640 G AIQ +I + + D V A++ V +A V + II T+ G KT Sbjct: 600 SSKGRAIQNVIQIEPD-DKVRAYIN--------VKRLDDAEYVNNNYIIMCTKDGTIKKT 650 Query: 641 FLKVSSEEK---MKLVVKVTGDH------------VAVVGENRKLLIFSIDQIPEMSR-G 684 L+ S + + +V GD V + K + F+ + + + R G Sbjct: 651 KLEAYSRPRQNGVNAIVIREGDQLIEAKLTSGSAEVMIAAREGKAIRFNENTVRPIGRVG 710 Query: 685 KGVRLQSYKDGG-ISDVICFKICEGLTWIDSAGRSYNRSENDLLGW-LGKRGGVGSLVPK 742 GVR S +G + +IC + + + Y + DL + + RGG G Sbjct: 711 AGVRGISLDEGDEVVGMICIEPNSSQDVLVLSENGYGK-RTDLDEYRITNRGGKGVKTIN 769 Query: 743 GFPRSGKFLS 752 ++GK +S Sbjct: 770 ITEKTGKLIS 779 >gi|15606292|ref|NP_213671.1| DNA gyrase A subunit [Aquifex aeolicus VF5] gi|6647520|sp|O67108|GYRA_AQUAE RecName: Full=DNA gyrase subunit A gi|2983485|gb|AAC07064.1| DNA gyrase A subunit [Aquifex aeolicus VF5] Length = 744 Score = 398 bits (1022), Expect = e-108, Method: Compositional matrix adjust. Identities = 254/686 (37%), Positives = 402/686 (58%), Gaps = 44/686 (6%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 EN+ + + +++ Y+ YA+S I RAIPD+RDG KPV RRI+++M EMGL FKK Sbjct: 5 ENLVEIPIEEEVKQAYIDYAMSVIVGRAIPDVRDGLKPVQRRILYSMYEMGLLPDKPFKK 64 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 SARIVGE +GK HPHGDQ+VY++LVR+AQ F RYPLI GQGNFG+IDGD AA RYTEA Sbjct: 65 SARIVGETLGKYHPHGDQAVYEALVRMAQDFTMRYPLIIGQGNFGSIDGDPAAQMRYTEA 124 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 +++ +A +L +D+D VDF+ +++ EP V PSKFPNLL NGTSGIAVG+ATSIP H Sbjct: 125 KLSPLAVEMLTDIDKDTVDFQPNFDDTLMEPEVLPSKFPNLLCNGTSGIAVGLATSIPPH 184 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 N+ E+ A + L NP+IS+++++E + GPDFPTGG+I E+ + E Y+ GRG +V+ Sbjct: 185 NLTEVGNALVKLAQNPQISVDEIMEILKGPDFPTGGVI-ENFAQVKEIYKTGRGIIKVKG 243 Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVL 313 + VE+V G IV+TEIPYQV K+ LI+KIA+ + +I + DIRDE+ E +RIV+ Sbjct: 244 KAHVEKVQGGRERIVITEIPYQVNKAELIKKIADNVRNGKIKEISDIRDETDKEGIRIVV 303 Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373 K R + +++ ++ + +E FP+N+ VL + + P+++ + +L+E++ HR EV+ Sbjct: 304 ELK-RDAKGEEVLKKLYKYTPLEKGFPVNLVVL-IDKEPKLVDIKTLLREFIKHRLEVIL 361 Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDA 430 RRS + ++ + R+ I++GLL A ID+II IR + + + ++ F L+E Q A Sbjct: 362 RRSKYFLKKVQDRLHIVEGLLKAINFIDDIIERIRRSKDASEARNYLMEEFGLSEKQAQA 421 Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490 +L+LRL+ L LE ++ E L + E L+ S + +I I E +E+ K Sbjct: 422 VLDLRLQRLTSLEREKLLEEEKELREKIEYYKKLVAS---EGERIKVFIEETEELVKKYG 478 Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDS 550 D +RRT V + + ITV + G I + + L ++ Sbjct: 479 D--KRRTFIGGVKEVKEGS----------ITVAVLQDGSI-------IPVEELPLEKAPV 519 Query: 551 LKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDS 610 + I L T+ + L+S G+ Y + L G + L + + IV AF+ + Sbjct: 520 VNI-LRVPFTEGLFLVSNRGRVYWIAGSQAL----QGSKVSL---KSREEKIVGAFIREK 571 Query: 611 -TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS-SEEKMKLVVKVTGDHVAVVGENR 668 +LL+ + KG + +E +G +K++ +E + + V H+ + + Sbjct: 572 FGNRLLLATKKGYVKKIPLAE-FEYKAQGMPIIKLTEGDEVVSIASSVDETHILLFTKKG 630 Query: 669 KLLIFSIDQIPEMSRG----KGVRLQ 690 ++ FS+ ++P + G +G++L+ Sbjct: 631 RVARFSVREVPPSTPGARGVQGIKLE 656 >gi|167766859|ref|ZP_02438912.1| hypothetical protein CLOSS21_01376 [Clostridium sp. SS2/1] gi|167711407|gb|EDS21986.1| hypothetical protein CLOSS21_01376 [Clostridium sp. SS2/1] gi|291558399|emb|CBL37199.1| DNA gyrase subunit A [butyrate-producing bacterium SSC/2] Length = 827 Score = 398 bits (1022), Expect = e-108, Method: Compositional matrix adjust. Identities = 240/654 (36%), Positives = 379/654 (57%), Gaps = 39/654 (5%) Query: 8 NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67 + NT+ ++ V + L+ +E Y+ YA+S I RA+PD+RDG KPV RRI++AM E+ Sbjct: 2 DENTIFDK-VHDIDLKKTMENSYIDYAMSVIASRALPDVRDGLKPVQRRILYAMIELNNG 60 Query: 68 FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAA 127 +K ARIVG+ +GK HPHGD S+Y +LV +AQ + RYPL+ G GNFG++DGD AA Sbjct: 61 PDKPHRKCARIVGDTMGKYHPHGDSSIYGALVNMAQEWSTRYPLVDGHGNFGSVDGDGAA 120 Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187 A RYTEAR+++++ +L ++++ VDFR ++E + EP V PS+FPNLL NGT GIAVGM Sbjct: 121 AMRYTEARLSKISMELLADINKNTVDFRPNFDETEKEPAVLPSRFPNLLVNGTQGIAVGM 180 Query: 188 ATSIPSHNVQEICEAALALIDNP-----EISIEKLLEYIIGPDFPTGGIIVESRESIVES 242 AT+IP HN++E+ A + +IDN E +IE+LLE I GPDFPTG I+ R I ++ Sbjct: 181 ATNIPPHNLREVINAVIKIIDNQVEEDRETTIEELLEIIKGPDFPTGATIL-GRSGIDQA 239 Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302 YR GRG +VRA +E + G I+VTE+PY V K+RLIEKIA L+ K++ + ++R Sbjct: 240 YRTGRGKIKVRAVTDIEAMANGKQRIIVTELPYMVNKARLIEKIATLVREKKVEGITELR 299 Query: 303 DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362 DES + R + ++++ ++ + ++ F + M L G+ P+ M L +L Sbjct: 300 DESDRSGMRICIELRRDANANVILNQLYKHTQLQDTFGVIMLALVDGQ-PKTMNLHEMLD 358 Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVS 419 +L H+++V+ RR+ + + + R IL+GLLIA NIDE+I IIR N K ++ Sbjct: 359 YYLTHQKDVVTRRTRYELNKAEERAHILEGLLIAQDNIDEVIKIIRGAENIQAAKLELME 418 Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479 RF L++ Q AI+++RLR+L LE +++ E L+ ++ ++L K+ I EI Sbjct: 419 RFGLSDAQAQAIVDMRLRALNGLERAKLEKEYKELMERIGELKAILADEKKLLGVIKDEI 478 Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR-----SLK 534 +++ + RRT D +++ +I +E + ++ G+I+ + K Sbjct: 479 ALIRDKYGDE-----RRTQIG--FDVDDISMED-LIPRENTVITMTKLGYIKRMTVDNFK 530 Query: 535 SHS---VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL-LSGR-GHGEA 589 S + + + + D ++ T I+ + G+ Y L A + SGR G A Sbjct: 531 SQNRGGKGIKGMQTIDEDYIEELFMTTTHHYIMFFTNTGRVYRLKAYEIPESGRTARGSA 590 Query: 590 IQLLIDLNHNQDIVTAFV----YDSTCKLLVVSSKGNAFIVEESEII--ANTRK 637 I L+ L + I TA + Y+ LL+ + G +V++S I+ AN RK Sbjct: 591 IVNLLQLQPGEKI-TAVIPLVDYEEGKYLLMATKYG---VVKKSSIMEYANIRK 640 >gi|291521102|emb|CBK79395.1| DNA gyrase subunit A [Coprococcus catus GD/7] Length = 849 Score = 398 bits (1022), Expect = e-108, Method: Compositional matrix adjust. Identities = 251/700 (35%), Positives = 407/700 (58%), Gaps = 50/700 (7%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 + + V L+ +E Y+ YA+S I RA+PD+RDG KPV RRI++AM E+ +K Sbjct: 7 DKIHEVDLKERMETFYIDYAMSVIASRALPDVRDGLKPVQRRILYAMIELNNGPDKPHRK 66 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 ARIVG+ +GK HPHGD S+Y +LV +AQ + RYPL+ G GNFG++DGD AAA RYTEA Sbjct: 67 CARIVGDAMGKYHPHGDSSIYGALVNMAQDWSTRYPLVDGHGNFGSMDGDGAAAMRYTEA 126 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 R+++++ ++ +++D VDF+ ++E + EPVV PS++PNLL NGT+GIAVGMAT+IP H Sbjct: 127 RLSKISMEMMADINKDTVDFQPNFDETEKEPVVLPSRYPNLLVNGTTGIAVGMATNIPPH 186 Query: 195 NVQEICEAALALID-----NPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249 N++E + + +ID N E +IE+L+E I GPDFPTG +I+ + I ++YR GRG Sbjct: 187 NLRETIDGVIKIIDNRVEENRETTIEELMEIIKGPDFPTGAMIL-GKNGINQAYRTGRGK 245 Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-ED 308 +VRA +E + G IV TE+PY V K++LIEKIAEL+ KRI + D+RDES+ E Sbjct: 246 LKVRAVTDIETMPNGRHRIVATELPYMVNKAKLIEKIAELVKDKRIEGISDLRDESSREG 305 Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368 +R+V+ K + +P++++ ++ + ++ + + M L + P ++ L +L+ +L H+ Sbjct: 306 LRVVIELK-KDANPNVVLNQLYKHTQLQDTYGVIMLAL-VNNQPMILNLKQMLELYLKHQ 363 Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTE 425 EV+ RR+ F + + R IL+GLLIA +IDE+I+IIR N + K ++ F LTE Sbjct: 364 EEVVTRRTRFELNKAEERAHILQGLLIALDHIDEVISIIRSSKNVAEAKTRLMETFGLTE 423 Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485 Q AI+++RLR+L LE +I++E + L+ ++ ++L K I EI+ +++ Sbjct: 424 VQAQAIVDMRLRALTGLEREKIENEYNELMKRIGELKAILADEKLLLGVIREEIKLIRDK 483 Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHS 537 + G R T V D+ T++ +I++E + ++ G+I RS Sbjct: 484 Y------GDDRKTSLGVD-DDEITVED-LIKRENTVIAMTQLGYIKRMTMDNFRSQNRGG 535 Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQL 592 + + + D + + A+T D IL + G K Y +P + ++ G A+ Sbjct: 536 RGIKGMTKLDEDCITELMMANTHDYILFFTNKGRVFRLKGYEIPEASRIA---RGTALIN 592 Query: 593 LIDLNHNQDIVTAFV----YDSTCKLLVVSSKGNAFIVEESEIIA--NTRKGKTFLKVSS 646 L+ L + VTA + Y++ L + + G +V+++ I+ N RK L + Sbjct: 593 LLQLEPGEK-VTATIPLEKYENDKYLFMATKNG---MVKKTSIMEYINVRK-TGLLAIGL 647 Query: 647 EEKMKLV-VKVT--GDHVAVVGENRKLLIFSIDQIPEMSR 683 E +L+ VKVT D + +V + + F D + R Sbjct: 648 REDDELIEVKVTDESDLIYLVSQKGMSICFKQDNVRATGR 687 >gi|2463534|dbj|BAA22542.1| DNA gyrase subunit A [Streptococcus thermophilus] Length = 545 Score = 398 bits (1022), Expect = e-108, Method: Compositional matrix adjust. Identities = 216/524 (41%), Positives = 337/524 (64%), Gaps = 14/524 (2%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 + N+ V+L ++ ++ YA+S I RA+PD+RDG KPV RRI++ M+E+G+ K Sbjct: 3 DNNLIDVNLTSEMKTSFIDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVTPDKPHK 62 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSARI G+V+GK HPHGD S+Y+++VR+AQ + RY L+ G GNFG++DGD AAA RYTE Sbjct: 63 KSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDGAAAQRYTE 122 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 ARM+++A +L+ ++++ VDF+D Y+ + EP+V PS+ PNLL NG +GIAVGMAT+IP Sbjct: 123 ARMSKIALEMLRDLNKNTVDFQDNYDGSEREPIVLPSRIPNLLVNGATGIAVGMATNIPP 182 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E +A ++DNPE++ +L+E + GPDFPTGG+++ + I +Y G+G +R Sbjct: 183 HNLAETIDAVKLMMDNPEVTTRELMEVLPGPDFPTGGLVM-GKSGIHRAYETGKGSIVLR 241 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312 +R +E G IVVTE PY V K+++ E I L KRI + +RDES+ E VR V Sbjct: 242 SRTEIETTKSGRERIVVTEFPYMVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGVRFV 301 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 + + R ++++ ++F L+ ++T F NM + G VP+++ L IL +++AH++EV+ Sbjct: 302 IEVR-RDASANVILNNLFKLTQLQTNFSFNMLAIEKG-VPKILSLRQILADYIAHQKEVV 359 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLTENQVD 429 RR+ F + R IL+GLLIA ++DE+I IIRN + + + +++RF LTE Q Sbjct: 360 VRRTQFDKDKAEARAHILEGLLIALDHLDEVITIIRNSQTDAEAQAELMARFELTERQSQ 419 Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489 AIL++RLR L LE +I++E D+LLA + +L ++ I E+ E K F+ Sbjct: 420 AILDMRLRRLTGLERDKIQNEYDDLLALITDLADILAKPERVIAIIKEELDESKRKFA-- 477 Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL 533 D R EV + + +IE+E + + +SN+G+I+ L Sbjct: 478 -DARRTELMVGEVV----SLEDEDLIEEEDVVITLSNKGYIKRL 516 >gi|255348546|ref|ZP_05380553.1| DNA gyrase subunit A [Chlamydia trachomatis 70] gi|255503086|ref|ZP_05381476.1| DNA gyrase subunit A [Chlamydia trachomatis 70s] gi|255506764|ref|ZP_05382403.1| DNA gyrase subunit A [Chlamydia trachomatis D(s)2923] gi|289525227|emb|CBJ14703.1| DNA gyrase subunit A [Chlamydia trachomatis Sweden2] gi|296434775|gb|ADH16953.1| DNA gyrase subunit A [Chlamydia trachomatis E/150] gi|296438495|gb|ADH20648.1| DNA gyrase subunit A [Chlamydia trachomatis E/11023] Length = 836 Score = 398 bits (1022), Expect = e-108, Method: Compositional matrix adjust. Identities = 236/593 (39%), Positives = 346/593 (58%), Gaps = 26/593 (4%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 EE + +L ++E YL Y++S I RA+PD RDG KP RRI++AM ++ L GA + Sbjct: 5 EEIIVPKNLEEEMKESYLRYSMSVIISRALPDARDGLKPSQRRILYAMKQLNLTPGAKHR 64 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 K A+I G+ G HPHG+ +Y +LVR+AQ + RYPL+ GQGNFG+IDGD AAA RYTE Sbjct: 65 KCAKICGDTSGDYHPHGESVIYPTLVRMAQDWAMRYPLVDGQGNFGSIDGDPAAAMRYTE 124 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 AR+TQ A +L+ +D+D VD Y+E EPVVFPSKFPNLL NG+SGIAVGMAT+IP Sbjct: 125 ARLTQSAIFLLEDLDKDTVDMVPNYDETKYEPVVFPSKFPNLLCNGSSGIAVGMATNIPP 184 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E+ EAAL ++ N + SIE +LE + GPDFPTGGII + E I +Y GRG R+R Sbjct: 185 HNLGELIEAALLVLANSQTSIEDILEVMPGPDFPTGGIICGT-EGIRSTYYTGRGKLRLR 243 Query: 254 ARWCVEE-VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRI 311 AR VEE + I++TE+PY V KSRLIE+IAELI K + + D+RDES +D +R+ Sbjct: 244 ARMHVEENSDKQRENIILTEMPYNVNKSRLIEQIAELINEKTLTGISDVRDESDKDGIRV 303 Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371 VL K + ++++ ++ +D++ F NM L +P+ M + ++ W+ HR +V Sbjct: 304 VLELK-KGESSEVVINRLYKFTDVQVTFGANMLALDKN-LPRTMNIHRMISAWIRHRMDV 361 Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQV 428 + RR+ + + + R IL+G L A +DE++ IR N++ K +V FS +E Q Sbjct: 362 IRRRTRYELNKAEARAHILEGFLKALSCMDEVVKTIRESSNKEHAKQQLVELFSFSEAQA 421 Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488 AIL LRL L LE +++ E LL + +L + + I E++E+ ++ Sbjct: 422 LAILELRLYQLTGLEADKVQKEYSELLEKITYYRKVLAEEELVKDIIREELQELHKVHKT 481 Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSVDL 540 R T E+ D ++ +I E + + IS +++ + K + Sbjct: 482 P------RRTRIEMDAGDVRDIED-IISDESVIITISGDDYVKRMPVKVFREQKRGGQGV 534 Query: 541 SALHFKEG-DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAI 590 + K+G D LK A T D +L+ + G+ Y L L G R G+ I Sbjct: 535 TGFDMKKGSDFLKAVYSASTKDYLLIFTNFGQCYWLKVWQLPEGERRAKGKPI 587 >gi|327405246|ref|YP_004346084.1| DNA gyrase subunit A [Fluviicola taffensis DSM 16823] gi|327320754|gb|AEA45246.1| DNA gyrase subunit A [Fluviicola taffensis DSM 16823] Length = 861 Score = 397 bits (1021), Expect = e-108, Method: Compositional matrix adjust. Identities = 222/609 (36%), Positives = 370/609 (60%), Gaps = 31/609 (5%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 E + +++ ++ Y+ Y++S I RA+PD+RDGFKPVHRR+++ M ++G+ +KK Sbjct: 5 EKIIQINIEDEMKSAYIDYSMSVIVSRALPDVRDGFKPVHRRVLYGMQDLGVYSNRPYKK 64 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 SARIVGEV+GK HPHGD SVYD++VR+AQ + RYPL+ GQGNFG++DGDS AA RYTEA Sbjct: 65 SARIVGEVLGKYHPHGDSSVYDTMVRMAQSWSLRYPLVDGQGNFGSVDGDSPAAMRYTEA 124 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 R+ ++AE +L ++++ VDF +++ EP V PSK PNLL NG SGIAVGMAT++ H Sbjct: 125 RLRKIAEEMLDDLEKETVDFAPNFDDSLQEPTVLPSKIPNLLVNGASGIAVGMATNMAPH 184 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 N+ E+ +A + +DN +I E+LL+++ PDFPTGGII + ++ GRG +RA Sbjct: 185 NLGEVVDAIIGYVDNKDIEDEELLQFVKAPDFPTGGIIY-GVDGARDALLTGRGRIVIRA 243 Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314 + +EE G G I+VTEIPYQV K+ +I+K A+L+ K+I + DIRDES + +++ Sbjct: 244 KAEIEESG-GREQIIVTEIPYQVNKADMIKKTADLVNDKKIEGISDIRDESDRNGMRIVY 302 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 R P++++ ++ + +++ F +N L GR P+++ L ++ E++ R EV+ R Sbjct: 303 ELKRDAIPNVVLNKLYKYTSLQSSFSINNICLVDGR-PRLLNLREMITEFVKFRHEVVVR 361 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVDAI 431 R+ + ++ + R IL+GL+IA NIDE+IAIIR+ P+ ++ RF+L++ Q AI Sbjct: 362 RTKYDLRKAEERAHILEGLIIASDNIDEVIAIIRSSKSPEEARERLMERFALSDLQSRAI 421 Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491 + +RLR L LE+ ++++E +L+A + +L +++ I E+ +++ T Sbjct: 422 VEMRLRQLTGLEQDKLRAEYADLMALITDLKDILAREERRMQIIKDELIDIR------TK 475 Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL-------- 543 G R + E S ++ + +I E + + IS+ G+I+ + + Sbjct: 476 YGDARRSRIEYSASEMKI--EDLIPDEEVVITISHAGYIKRTNLDEFKVQSRGGMGSKGS 533 Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKA-----YTLPAGNLLSGRGHGEAIQLLIDLNH 598 ++ D L+ A + +L+ + G+ + +P GN + G AIQ L+++ Sbjct: 534 TTRDKDFLEHLFVATNHNYLLIFTEKGRCFWMRVFEVPEGNKTA---KGRAIQNLLNIEQ 590 Query: 599 NQDIVTAFV 607 + D + A+V Sbjct: 591 D-DKIKAYV 598 >gi|237709930|ref|ZP_04540411.1| DNA gyrase A subunit [Bacteroides sp. 9_1_42FAA] gi|229456023|gb|EEO61744.1| DNA gyrase A subunit [Bacteroides sp. 9_1_42FAA] Length = 852 Score = 397 bits (1021), Expect = e-108, Method: Compositional matrix adjust. Identities = 254/769 (33%), Positives = 422/769 (54%), Gaps = 41/769 (5%) Query: 12 LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71 L ++ + +++ ++ Y+ Y++S I RA+PD+RDGFKPVHRRI++ M E+G A Sbjct: 2 LEQDRIIKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMIELGNTSDKA 61 Query: 72 FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131 +KKSARIVGEV+GK HPHGD SVY +LVR+AQ + RYPL+ GQGNFG++DGDS AA RY Sbjct: 62 YKKSARIVGEVLGKYHPHGDSSVYGALVRMAQDWAMRYPLVDGQGNFGSVDGDSPAAMRY 121 Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191 TEAR+ ++ E ++Q + ++ VDF++ +++ EP V P++ PNLL NG SGIAVGMAT++ Sbjct: 122 TEARLKKIGEEMMQDLYKETVDFQNNFDDTLQEPTVMPTRIPNLLVNGASGIAVGMATNM 181 Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251 P+HN+ EI +A +A IDN +I IE L++Y+ PDFPTGG I + ++Y GRG Sbjct: 182 PTHNLSEIIDACIAYIDNNDIDIEGLMQYVKAPDFPTGGYIY-GISGVRDAYETGRGRVV 240 Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVR 310 +RA+ + E I+V EIPY V K LIE IA L+ K+I + + DES E +R Sbjct: 241 MRAKAEI-ETHTTHDKIIVNEIPYNVNKKELIENIASLVNDKKIDGISYVNDESDREGMR 299 Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370 IV+ K R + +++ +F ++ ++T F +N L GR P+++ L +++ ++ HR + Sbjct: 300 IVIDVK-RDANASVVLNKLFKMTALQTSFGVNNIALVHGR-PKMLNLKDLIRYFVEHRHD 357 Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQ 427 V+ RR+ + ++ R IL+GL+IA NIDE+I IIR P ++ RF+L+E Q Sbjct: 358 VVIRRTQYDLRKAQERAHILEGLIIASDNIDEVIRIIRAAKTPNDAIAGLIERFNLSEIQ 417 Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487 AI+ +RLR L L + Q+ +E + ++ + + +L++ + I E+ EVKE + Sbjct: 418 ARAIVEMRLRQLTGLMQDQLHAEYEEVMKQIAYYEEILSNDELCKKVIKDELIEVKEKYG 477 Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVD 539 + RR+ E+ + + + + + + IS+ G+I R+ V Sbjct: 478 DA-----RRS---EIVYSSEEFNPEDFYADDQMVITISHMGYIKRTPLSEFRAQNRGGVG 529 Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLN 597 ++ D ++ A + ++ + GK Y L + G G AIQ L++++ Sbjct: 530 SKGSETRDEDFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTKNAKGRAIQNLLNID 589 Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANT---------RKGKTFLKVSSEE 648 + D+VTA++ + ++ +I T + G + + ++ Sbjct: 590 SD-DVVTAYLRVKNLNDTEFINSHYVLFCTKNGVIKKTLLEQYSRPRQNGVNAITIREDD 648 Query: 649 KMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSY-KDGG--ISDVICF 703 K+ V GD+ + + N + + F + M R GVR + +DGG + +IC Sbjct: 649 KVIEVRMTNGDNEIIIANRNGRAIRFHESAVRVMGRTATGVRGMTLDEDGGDEVIGMICI 708 Query: 704 KICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752 K E + + + + Y + + RGG G ++GK ++ Sbjct: 709 KDPEAESIMVVSEQGYGKRSDIEDYRKTNRGGKGVKTLNITDKTGKLVA 757 >gi|311085922|gb|ADP66004.1| DNA gyrase subunit A [Buchnera aphidicola str. LL01 (Acyrthosiphon pisum)] gi|311086493|gb|ADP66574.1| DNA gyrase subunit A [Buchnera aphidicola str. TLW03 (Acyrthosiphon pisum)] Length = 830 Score = 397 bits (1021), Expect = e-108, Method: Compositional matrix adjust. Identities = 234/590 (39%), Positives = 358/590 (60%), Gaps = 44/590 (7%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 V++ L+ YL Y++S I RA+PD+RDG KPVHRRI+ AM + D+ A+KKSARIV Sbjct: 11 VNIEEELKSSYLDYSMSVIVGRALPDVRDGLKPVHRRILFAMYILNNDWNKAYKKSARIV 70 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGD +VYD++VR+AQ F RY LI GQGNFG++DGDSAAA RYTE RM+++ Sbjct: 71 GDVIGKYHPHGDSAVYDAIVRMAQKFSLRYMLIDGQGNFGSVDGDSAAAMRYTEVRMSKI 130 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A +L ++++ V+F Y+ + P + P+K PNLL NG+SGIAVGMAT+IP HN+ E+ Sbjct: 131 AHELLNDLEKNTVEFLPNYDGTEYIPEILPAKIPNLLINGSSGIAVGMATNIPPHNLNEV 190 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV- 258 LA IDN +I++E+L+++I GPDFPT II + I E+YR G+G +RA+ + Sbjct: 191 INGCLAYIDNNDITLEELIKHIPGPDFPTAAII-NGKSGIEEAYRTGKGKIYIRAQNQIE 249 Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKN 317 + IV EIPYQV KSRLIEKIAEL+ KRI + +RDES +D +RIV+ K Sbjct: 250 KNKKNKKESIVFNEIPYQVNKSRLIEKIAELVKEKRIDGITALRDESDKDGMRIVIEIKR 309 Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377 ++ ++++ ++ L+ ++ F +NM L G+ P+ + L ILK +L+HR+E++ RRS Sbjct: 310 EAI-AEVILNQLYSLTQLQISFGINMVALCQGQ-PKTLSLKEILKNFLSHRQEIIIRRSL 367 Query: 378 FRMQAIDRRVEILKGLLIAYL--------------NIDEIIAIIRNEDKPKPVMV----S 419 F + + R+ IL+GL +A + +ID II+ K + + Sbjct: 368 FELNKVRNRIHILEGLNMALININAIIEIIKNSVNSIDAKKIIIQKNWKSEKINYLAKKH 427 Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479 + +E QV AIL+LRL + LE+ +I E ++L+ + +++ +L + K+ + I E+ Sbjct: 428 EYYFSEKQVQAILDLRLHKITNLEQEKIIMEHNDLIKKTKELKEILENPKKMFEVIKSEL 487 Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHS 537 ++ FS +RRT E + +D + +I +E + V +S+ G+++ L ++ Sbjct: 488 LSIQNNFS-----DKRRTKITE-NHSD--INMEDLINQEDVVVTLSHSGYVKYQPLSDYN 539 Query: 538 VDL------SALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLP 576 SA KE D ++ + A+T D IL S+ G K Y LP Sbjct: 540 AQRRGGKGKSAAKIKEEDFIESLVIANTHDTILCFSSRGILYWMKVYQLP 589 >gi|331004660|ref|ZP_08328122.1| DNA gyrase subunit A [Lachnospiraceae oral taxon 107 str. F0167] gi|330409587|gb|EGG89027.1| DNA gyrase subunit A [Lachnospiraceae oral taxon 107 str. F0167] Length = 824 Score = 397 bits (1021), Expect = e-108, Method: Compositional matrix adjust. Identities = 259/766 (33%), Positives = 429/766 (56%), Gaps = 54/766 (7%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 + L+ +E+ Y+ YA+S I RA+PD+RDG KPV RR++ +M E+ +K ARIV Sbjct: 12 IDLKKTMEKSYIDYAMSVIAARALPDIRDGLKPVQRRVLFSMIELNNGPDKPHRKCARIV 71 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+ +GK HPHGD S+Y SLV +AQ + RYPL+ G GNFG++DGD AAA RYTEAR++++ Sbjct: 72 GDTMGKYHPHGDSSIYGSLVNMAQEWSMRYPLVDGHGNFGSVDGDGAAAMRYTEARLSKI 131 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A +L +++D VDF ++E + EP V P+++PNLL NGT+GIAVGMAT+IP HN+ E+ Sbjct: 132 AMEMLADINKDTVDFAPNFDETEKEPTVMPARYPNLLVNGTTGIAVGMATNIPPHNLSEV 191 Query: 200 CEAALALIDN----PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 A + +I+N E SI+++L+ + GPDFPTG I+ + I ++Y GRG +VRA Sbjct: 192 INAVVRIINNKIEEKETSIDEMLDIVKGPDFPTGAHILGIK-GIRDAYTTGRGKIKVRAV 250 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315 +E + G IVVTE+PY V K++LIEKIAEL+ K++ + D+RDES + V+ Sbjct: 251 SEIESMQNGKNRIVVTELPYLVNKAKLIEKIAELVKDKKVDGITDLRDESNREGMRVVIE 310 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 R ++ ++++ ++ + ++ F +NM L + P+V+ + +L+ +LAH+ +V+ RR Sbjct: 311 LRRDVNANVILNRLYKHTQLQETFGVNMLAL-VNNQPKVLNILQMLEYYLAHQEDVVTRR 369 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432 + + + R IL+GLLIA NIDEII IIR N + K ++ RF L++ Q AI+ Sbjct: 370 TKYDLNKAKERAHILEGLLIALDNIDEIIKIIRGSANVNIAKEELIKRFGLSDVQAQAIV 429 Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492 ++RLR+L LE ++++E + LL++ E +S+L K+ I EI V+ + Sbjct: 430 DMRLRALTGLERERLEAEYNELLSKIEYFESILADNKKLLGVIKEEILIVEGKYKDD--- 486 Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD--------LSALH 544 RRT F + D + +I+KE I + ++ G+I+ + + + + + Sbjct: 487 --RRTGFIQ----DDEMEDEDLIQKEDIIIAMTKLGYIKRMSPDNFNVQNRGGKGIKGMQ 540 Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDI 602 + D ++ + + T I + G+ YT+ + S G AI L+ L ++ I Sbjct: 541 TIDDDFIEDIVMSTTHKDIYFFTNKGRVYTIKGYKIPEASRTARGIAIVNLLQLQPDEKI 600 Query: 603 VTAFVYDSTCK---LLVVSSKGNAFIVEESEI--IANTRK-GKTFLKVSSEEKMKLVVKV 656 +++ L +V+ KG +++ I N RK G + ++ ++++ + VKV Sbjct: 601 SAIIPSEASSGEGYLFMVTKKGT---IKKCRINLFDNIRKNGLAAINLTEDDEL-IEVKV 656 Query: 657 T-GDHVAVVGENRKLLIFSIDQ-IPEMSRG----KGVRLQSYKDGGISDVICFKIC---E 707 T GD ++ + I D+ I M RG +G+RL +VI ++ E Sbjct: 657 THGDDDLIIVSKYGMCIRINDKDIRAMGRGATGVRGMRLNE-----ADEVIGMQLASQGE 711 Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753 L + G Y + + RGG G + K ++GK + + Sbjct: 712 YLLLVSEYG--YGKRTKISEFKVQNRGGKGIICYKDNDKTGKLVGA 755 >gi|224824087|ref|ZP_03697195.1| DNA gyrase, A subunit [Lutiella nitroferrum 2002] gi|224603506|gb|EEG09681.1| DNA gyrase, A subunit [Lutiella nitroferrum 2002] Length = 861 Score = 397 bits (1021), Expect = e-108, Method: Compositional matrix adjust. Identities = 237/613 (38%), Positives = 359/613 (58%), Gaps = 62/613 (10%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 +SL + YL YA+S I RA+PD+RDG KPVHRR++ AM E+ D+ A+KKSARIV Sbjct: 13 ISLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELSNDWNRAYKKSARIV 72 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGD +VYD++VR+AQ F RYPLI GQGNFG++DGD+AAA RYTE RM ++ Sbjct: 73 GDVIGKYHPHGDSAVYDTIVRMAQDFSLRYPLIDGQGNFGSVDGDNAAAMRYTEIRMARI 132 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A +L ++++ VDF Y+ + EP++ P+K PNLL NG+SGIAVGMAT+IP HN+ E+ Sbjct: 133 AHELLADIEKETVDFGPNYDGSEQEPLILPAKIPNLLINGSSGIAVGMATNIPPHNLNEV 192 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 + LA++ + +I+I++L++ I PDFPT GII + + E YR GRG +RAR E Sbjct: 193 IDGCLAVLASSDITIDELIDIIPAPDFPTAGIIYGT-AGVKEGYRTGRGRVIMRARTHFE 251 Query: 260 EVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318 ++G+G I+V E+PYQV K+RL+E+I EL+ K+I + D+RDES + V+ R Sbjct: 252 DIGKGDRQAIIVDELPYQVNKARLLERIGELVRDKQIEGISDLRDESDKSGMRVVIELKR 311 Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378 P++++ ++ L+ ++ F +NM L G+ P+++ L IL+E+L HRREV+ RR+ F Sbjct: 312 GEMPEVVLNHLYKLTQLQDSFGINMVALVDGQ-PRLLNLKQILEEFLRHRREVVTRRTIF 370 Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV-----------------MVSR- 420 ++ R IL+GL +A N+DEIIA+I+ + P PV M++R Sbjct: 371 ELRKARERGHILEGLAVALSNVDEIIALIKASETP-PVAKIALMEREWRSPLVEEMLARV 429 Query: 421 --------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEK 460 + L+E Q AIL LRL+ L LE+ +I E ++ E Sbjct: 430 DQDKARPDGLLPEFGLKEQGYKLSEVQAQAILELRLQRLTGLEQDKIVGEYREIM---EV 486 Query: 461 IDSLLN--SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518 I L++ + ++ NQI + E+ + T G R + E D + +I + Sbjct: 487 ILDLIDILARPERINQIISD-----ELNAIKTQFGDARRSEIEPFGGDINI--EDLITPQ 539 Query: 519 PITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570 + V +S+ G+I RS + A K+ D ++ A+T D +L S+ G Sbjct: 540 DMVVTVSHSGYIKTQPVDDYRSQRRGGRGKQAAATKDDDFIETLFVANTHDYVLCFSSFG 599 Query: 571 KAYTLPAGNLLSG 583 + Y + +L G Sbjct: 600 RCYWIKVYDLPQG 612 >gi|332879627|ref|ZP_08447322.1| DNA gyrase, A subunit [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332682593|gb|EGJ55495.1| DNA gyrase, A subunit [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 855 Score = 397 bits (1021), Expect = e-108, Method: Compositional matrix adjust. Identities = 228/608 (37%), Positives = 359/608 (59%), Gaps = 32/608 (5%) Query: 12 LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71 L ++ + V++ + + Y+ Y++S I RA+PD+RDGFKPVHRRI++ M E+G Sbjct: 2 LDQDRIIKVNIETEMRKSYIDYSMSVIVSRALPDVRDGFKPVHRRILYGMRELGNTHDKP 61 Query: 72 FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131 +KK ARIVGEV+GK HPHGD SVY +LVR+AQ + RY L+ GQGNFG++DGDSAAA RY Sbjct: 62 YKKCARIVGEVLGKYHPHGDSSVYGALVRMAQEWSMRYTLVDGQGNFGSVDGDSAAAMRY 121 Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191 TEAR+ + E ++ ++++ VD + +++ EP V P+K PNLL NG SGIAVGMAT+I Sbjct: 122 TEARLQLMGEAMMDDLEKETVDMMNNFDDTLREPTVMPTKIPNLLVNGASGIAVGMATNI 181 Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251 P+HN+ E+ +A +A IDN +I I+ L+EYI PDFPTGG I + + ++Y GRG Sbjct: 182 PTHNLGEVIDACVAYIDNRDIDIDGLMEYIKAPDFPTGGFIY-GMQGVRDAYETGRGRVI 240 Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVR 310 +RAR +E G IV+TEIPY V K+ LI++IA+L+ K+I + + DES E +R Sbjct: 241 MRARAEIEP-GENHDKIVITEIPYGVNKAELIKQIADLVNDKKIEGISNANDESDREGMR 299 Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370 IV+ K R + ++++ +F ++ ++T F +N L GR P+++ L + ++ HR + Sbjct: 300 IVVDVK-RDANANVVLNKLFKMTPLQTSFSVNCIALVKGR-PKLLSLKDCISNFVNHRHD 357 Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQ 427 V+ RR+ + ++ + R IL+GL+IA NIDE++ IIR+ P+ +++RF L E Q Sbjct: 358 VVIRRTQYDLRKAEERAHILQGLIIASDNIDEVVHIIRSAQNPQAAIEGLMNRFELDEVQ 417 Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487 AI+ +RLR L L + Q+++E D LL + E +L+ I E+ EVKE F Sbjct: 418 AKAIVEMRLRQLTNLMQEQLRNEYDELLKQIEYFKQILSDEDLCMKVIKDELIEVKEQFG 477 Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVD 539 RR+ E+ + + + + + + IS+ G+I R+ V Sbjct: 478 DE-----RRS---EIVYSSEEFNPEDFYADDEMVITISHMGYIKRTPLAEFRAQARGGVG 529 Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLI 594 ++ D ++ A + +L + G K Y +P G + G AIQ ++ Sbjct: 530 SKGTSTRDTDFVEYIYPATMHNTMLFFTQKGRCFWMKVYEIPEG---AKNSKGRAIQNML 586 Query: 595 DLNHNQDI 602 +++ + I Sbjct: 587 NIDPDDAI 594 >gi|170742567|ref|YP_001771222.1| DNA gyrase, A subunit [Methylobacterium sp. 4-46] gi|168196841|gb|ACA18788.1| DNA gyrase, A subunit [Methylobacterium sp. 4-46] Length = 914 Score = 397 bits (1021), Expect = e-108, Method: Compositional matrix adjust. Identities = 250/699 (35%), Positives = 383/699 (54%), Gaps = 75/699 (10%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 ++K VS+ + YL YA+S I RA+PD RDG KPVHRRI+++M E G + KS Sbjct: 17 DIKPVSITDEMRRSYLDYAMSVIVSRALPDARDGLKPVHRRILYSMYENGYLPERKYVKS 76 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 ARIVG+V+G+ HPHGDQS+YD+LVR+AQ F R L+ GQGNFG+IDGD AA RYTE+R Sbjct: 77 ARIVGDVMGQYHPHGDQSIYDALVRMAQDFAMRLMLVDGQGNFGSIDGDPPAAMRYTESR 136 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 + + A +L+ +D++ VDF Y+E EP V P++FPNLL NG GIAVGMAT+IP HN Sbjct: 137 LAKPAMALLEDIDKNTVDFNPNYDESKDEPAVLPARFPNLLVNGAGGIAVGMATNIPPHN 196 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 + E+ E +ALID+P ++IE L E I GPDFPTGG I+ R +Y GRG +RA+ Sbjct: 197 LGEVIEGCIALIDDPALTIEGLNEIIPGPDFPTGGQIL-GRAGTRAAYMTGRGSVIMRAK 255 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314 VEE+ + +V TEIPYQV K+ L+EKIAEL+ KRI + D+RDES D +RIV+ Sbjct: 256 SHVEEIRKEREALVFTEIPYQVNKASLVEKIAELVRDKRIEGVSDLRDESDRDGMRIVVE 315 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K ++ D+++ ++ + ++T F NM L+ GR P+++ L +++ ++ R EV+ R Sbjct: 316 LKRDAM-ADVVLNQLYRYTPLQTSFGCNMVALNGGR-PELLNLKDLIQAFIDFREEVVSR 373 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----------- 420 R+ F ++ R +L GL IA NIDE+I +IR P + +++R Sbjct: 374 RTKFLLRKARERAHVLCGLAIAVANIDEVIRLIRTSPDPNSAREALMARDWPAVDIAPLI 433 Query: 421 ---------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLL 465 + L++ Q AIL+LRL+ L L ++ EL L E +L Sbjct: 434 ALVDDPRHRVADDGTYRLSDAQARAILDLRLQRLTALGRDEVGDELKQLADEIADYLDIL 493 Query: 466 NSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVIS 525 S + + E+ EV+ F+ RRT E+ D + +I++E + V +S Sbjct: 494 RSRARILGIVKAELAEVRAEFATP-----RRT---EIQDWDSTVEDEDLIQREDMVVTVS 545 Query: 526 NRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT--- 574 + G+I R+ + S + ++ D + A+T +L S+ G+AY Sbjct: 546 HAGYIKRVPLSTYRAQRRGGKGRSGMTTRDEDFVTRLFVANTHTPVLFFSSQGQAYKEKV 605 Query: 575 --LPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV-------YDSTCKLLVVSSKGNAFI 625 LP L + G+A+ ++ L+ + + +T + T ++ ++ G+ Sbjct: 606 WRLP---LAAPNARGKALVNILPLDTSGERITTIMPLPEDEASWETLDVMFATASGHVRR 662 Query: 626 VEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVV 664 + S+ + R GK +K+ GDH+ V Sbjct: 663 NKLSDFVQVNRNGKIAMKLDE-----------GDHIVHV 690 >gi|150005805|ref|YP_001300549.1| DNA gyrase A subunit [Bacteroides vulgatus ATCC 8482] gi|294777724|ref|ZP_06743173.1| DNA gyrase, A subunit [Bacteroides vulgatus PC510] gi|149934229|gb|ABR40927.1| DNA gyrase A subunit [Bacteroides vulgatus ATCC 8482] gi|294448424|gb|EFG16975.1| DNA gyrase, A subunit [Bacteroides vulgatus PC510] Length = 855 Score = 397 bits (1021), Expect = e-108, Method: Compositional matrix adjust. Identities = 253/769 (32%), Positives = 422/769 (54%), Gaps = 41/769 (5%) Query: 12 LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71 L ++ + +++ ++ Y+ Y++S I RA+PD+RDGFKPVHRRI++ M E+G A Sbjct: 2 LEQDRIIKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMIELGNTSDKA 61 Query: 72 FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131 +KKSARIVGEV+GK HPHGD SVY +LVR+AQ + RYPL+ GQGNFG++DGDS AA RY Sbjct: 62 YKKSARIVGEVLGKYHPHGDSSVYGALVRMAQDWAMRYPLVDGQGNFGSVDGDSPAAMRY 121 Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191 TEAR+ ++ E ++Q + ++ VDF++ +++ EP V P++ PNLL NG SGIAVGMAT++ Sbjct: 122 TEARLKKIGEEMMQDLYKETVDFQNNFDDTLQEPTVMPTRIPNLLVNGASGIAVGMATNM 181 Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251 P+HN+ E+ +A +A IDN +I IE L++Y+ PDFPTGG I + ++Y GRG Sbjct: 182 PTHNLSEVIDACIAYIDNNDIDIEGLMQYVKAPDFPTGGYIY-GISGVRDAYETGRGRVV 240 Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVR 310 +RA+ + E I+V EIPY V K LIE IA L+ K+I + + DES E +R Sbjct: 241 MRAKAEI-ETHTTHDKIIVNEIPYNVNKKELIENIASLVNDKKIDGISYVNDESDREGMR 299 Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370 IV+ K R + +++ +F ++ ++T F +N L GR P+++ L +++ ++ HR + Sbjct: 300 IVIDVK-RDANASVVLNKLFKMTALQTSFGVNNIALVHGR-PKMLNLKDLIRYFVEHRHD 357 Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQ 427 V+ RR+ + ++ R IL+GL+IA NIDE+I IIR P ++ RF+L+E Q Sbjct: 358 VVIRRTQYDLRKAQERAHILEGLIIASDNIDEVIRIIRAAKTPNDAIAGLIERFNLSEIQ 417 Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487 AI+ +RLR L L + Q+ +E + ++ + + +L++ + I E+ EVKE + Sbjct: 418 ARAIVEMRLRQLTGLMQDQLHAEYEEVMKQIAYYEEILSNDELCKKVIKDELVEVKEKYG 477 Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVD 539 + RR+ E+ + + + + + + IS+ G+I R+ V Sbjct: 478 DA-----RRS---EIVYSSEEFNPEDFYADDQMVITISHMGYIKRTPLSEFRAQNRGGVG 529 Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLN 597 ++ D ++ A + ++ + GK Y L + G G AIQ L++++ Sbjct: 530 SKGSETRDEDFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTKNAKGRAIQNLLNID 589 Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANT---------RKGKTFLKVSSEE 648 + D+VTA++ + ++ +I T + G + + ++ Sbjct: 590 SD-DVVTAYLRVKNLNDTEFINSHYVLFCTKNGVIKKTLLEQYSRPRQNGVNAITIREDD 648 Query: 649 KMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSY-KDGG--ISDVICF 703 K+ V GD+ + + N + + F + M R GVR + +DGG + +IC Sbjct: 649 KVIEVRMTNGDNEIIIANRNGRAIRFHESAVRVMGRTATGVRGMTLDEDGGDEVIGMICI 708 Query: 704 KICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752 K E + + + + Y + + RGG G ++GK ++ Sbjct: 709 KDPEAESIMVVSEQGYGKRSDIEDYRKTNRGGKGVKTLNITDKTGKLVA 757 >gi|219681554|ref|YP_002467939.1| DNA gyrase subunit A [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|257471237|ref|ZP_05635236.1| DNA gyrase subunit A [Buchnera aphidicola str. LSR1 (Acyrthosiphon pisum)] gi|219624397|gb|ACL30552.1| DNA gyrase subunit A [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] Length = 830 Score = 397 bits (1021), Expect = e-108, Method: Compositional matrix adjust. Identities = 233/590 (39%), Positives = 355/590 (60%), Gaps = 44/590 (7%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 V++ L+ YL Y++S I RA+PD+RDG KPVHRRI+ AM + D+ A+KKSARIV Sbjct: 11 VNIEEELKSSYLDYSMSVIVGRALPDVRDGLKPVHRRILFAMYILNNDWNKAYKKSARIV 70 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGD +VYD++VR+AQ F RY LI GQGNFG++DGDSAAA RYTE RM+++ Sbjct: 71 GDVIGKYHPHGDSAVYDAIVRMAQKFSLRYMLIDGQGNFGSVDGDSAAAMRYTEVRMSKI 130 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A +L ++++ V+F Y+ + P + P+K PNLL NG+SGIAVGMAT+IP HN+ E+ Sbjct: 131 AHELLNDLEKNTVEFLPNYDGTEYIPEILPAKIPNLLINGSSGIAVGMATNIPPHNLNEV 190 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV- 258 LA IDN +I++E+L+++I GPDFPT II + I E+YR G+G +RA+ + Sbjct: 191 INGCLAYIDNNDITLEELIKHIPGPDFPTAAII-NGKSGIEEAYRTGKGKIYIRAQNQIE 249 Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKN 317 + IV EIPYQV KSRLIEKIAEL+ KRI + +RDES +D +RIV+ K Sbjct: 250 KNKKNKKESIVFNEIPYQVNKSRLIEKIAELVKEKRIDGITALRDESDKDGMRIVIEIKR 309 Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377 ++ ++++ ++ L+ ++ F +NM L G+ P+ + L ILK +L+HR+E++ RRS Sbjct: 310 EAI-AEVILNQLYSLTQLQISFGINMVALCQGQ-PKTLSLKEILKNFLSHRQEIIIRRSL 367 Query: 378 FRMQAIDRRVEILKGLLIAYL--------------NIDEIIAIIRNEDKPKPVMV----S 419 F + + R+ IL+GL +A + +ID II+ K + + Sbjct: 368 FELNKVRNRIHILEGLNMALININAIIEIIKNSVNSIDAKKIIIQKNWKSEKINYLAKKH 427 Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479 + +E QV AIL+LRL + LE+ +I E ++L+ + +++ +L + K+ + I E+ Sbjct: 428 EYYFSEKQVQAILDLRLHKITNLEQEKIIMEHNDLIKKTKELKEILENPKKMFEVIKSEL 487 Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHS 537 ++ FS +RRT E + +I +E + V +S+ G+++ L ++ Sbjct: 488 LSIQNNFS-----DKRRTKITE---NHSNINMEDLINQEDVVVTLSHSGYVKYQPLSDYN 539 Query: 538 VDL------SALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLP 576 SA KE D ++ + A+T D IL S+ G K Y LP Sbjct: 540 AQRRGGKGKSAAKIKEEDFIESLVIANTHDTILCFSSRGILYWMKVYQLP 589 >gi|219682110|ref|YP_002468494.1| DNA gyrase subunit A [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|219621843|gb|ACL29999.1| DNA gyrase subunit A [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] Length = 830 Score = 397 bits (1021), Expect = e-108, Method: Compositional matrix adjust. Identities = 234/590 (39%), Positives = 358/590 (60%), Gaps = 44/590 (7%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 V++ L+ YL Y++S I RA+PD+RDG KPVHRRI+ AM + D+ A+KKSARIV Sbjct: 11 VNIEEELKSSYLDYSMSVIVGRALPDVRDGLKPVHRRILFAMYILNNDWNKAYKKSARIV 70 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGD +VYD++VR+AQ F RY LI GQGNFG++DGDSAAA RYTE RM+++ Sbjct: 71 GDVIGKYHPHGDSAVYDAIVRMAQKFSLRYMLIDGQGNFGSVDGDSAAAMRYTEVRMSKI 130 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A +L ++++ V+F Y+ + P + P+K PNLL NG+SGIAVGMAT+IP HN+ E+ Sbjct: 131 AHELLNDLEKNTVEFLPNYDGTEYIPEILPAKIPNLLINGSSGIAVGMATNIPPHNLNEV 190 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV- 258 LA IDN +I++E+L+++I GPDFPT II + I E+YR G+G +RA+ + Sbjct: 191 INGCLAYIDNNDITLEELIKHIPGPDFPTAAII-NGKSGIEEAYRTGKGKIYIRAQNQIE 249 Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKN 317 + IV EIPYQV KSRLIEKIAEL+ KRI + +RDES +D +RIV+ K Sbjct: 250 KNKKNKKESIVFNEIPYQVNKSRLIEKIAELVKEKRIDGITALRDESDKDGMRIVIEIKR 309 Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377 ++ ++++ ++ L+ ++ F +NM L G+ P+ + L ILK +L+HR+E++ RRS Sbjct: 310 EAI-AEVILNQLYSLTQLQISFGINMVALCQGQ-PKTLSLKEILKNFLSHRQEIIIRRSL 367 Query: 378 FRMQAIDRRVEILKGLLIAYL--------------NIDEIIAIIRNEDKPKPVMV----S 419 F + + R+ IL+GL +A + +ID II+ K + + Sbjct: 368 FELNKVRNRIHILEGLNMALININAIIEIIKNSVNSIDAKKIIIQKNWKSEKINYLAKKH 427 Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479 + +E QV AIL+LRL + LE+ +I E ++L+ + +++ +L + K+ + I E+ Sbjct: 428 EYYFSEKQVQAILDLRLHKITNLEQEKIIIEHNDLIKKTKELKEILENPKKMFEVIKSEL 487 Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHS 537 ++ FS +RRT E + +D + +I +E + V +S+ G+++ L ++ Sbjct: 488 LSIQNNFS-----DKRRTKITE-NHSD--INMEDLINQEDVVVTLSHSGYVKYQPLSDYN 539 Query: 538 VDL------SALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLP 576 SA KE D ++ + A+T D IL S+ G K Y LP Sbjct: 540 AQRRGGKGKSAAKIKEEDFIESLVIANTHDTILCFSSRGILYWMKVYQLP 589 >gi|83816214|ref|YP_445607.1| type II DNA topoisomerase, A subunit [Salinibacter ruber DSM 13855] gi|83757608|gb|ABC45721.1| type II DNA topoisomerase, A subunit [Salinibacter ruber DSM 13855] Length = 777 Score = 397 bits (1021), Expect = e-108, Method: Compositional matrix adjust. Identities = 222/603 (36%), Positives = 349/603 (57%), Gaps = 22/603 (3%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM-SEMGLDFGAAFKKS 75 + + L ERYL YALS I RA+PD+RDG KPV RRI+ AM + L +KS Sbjct: 4 TETIPLHETARERYLNYALSVITSRALPDIRDGLKPVQRRILFAMFDSLNLYPSKRHRKS 63 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 A +VGE +GK HPHGD+++YD++VR+AQ F R PL+ G GNFG++DGDSAAA RYTEA+ Sbjct: 64 ATVVGETMGKYHPHGDKAIYDAMVRMAQSFSLRAPLVDGHGNFGSLDGDSAAAMRYTEAK 123 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 + +A +L+G+ ++ VD+RD ++ EPVV P++ PNLL NG SGIAVGMAT+IP HN Sbjct: 124 LQPLAMEMLEGLRDETVDYRDNFDGSLEEPVVLPARVPNLLVNGASGIAVGMATNIPPHN 183 Query: 196 VQEICEAALALIDNPEISIEKLL-EYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 + E+ +AAL +I+ PE+ L+ ++I GPDFPTGG I+ +++ + E Y G G +R Sbjct: 184 LGEVVDAALHMIEEPEVDTSTLVRDHIQGPDFPTGGRILNTQDELAEIYETGSGTIEMRG 243 Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314 + +G ++ +PY V KS+++E+IA+ I + +P L ++RDES +DVRIVL Sbjct: 244 AYRT----KGKTRAIIESVPYGVDKSKIVEEIADHIAEENVPQLSNVRDESTDDVRIVLE 299 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVL-----SMGRVPQVMPLDGILKEWLAHRR 369 K R D + M +F + ++ RF +N+ L + + P+ + L IL+ +L R Sbjct: 300 LK-RGSDTEAAMAYLFKHTKLQKRFHVNLTCLVPTESTDVKAPKQVDLRTILRYFLDFRL 358 Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTEN 426 +V+ RR + ++ R+ IL+G + +DE I IIR N+ ++ RF L E Sbjct: 359 DVVTRRLQNELAELEARIHILEGFETIFDALDEAIEIIRASKNKADAAQRLMHRFQLDEE 418 Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486 Q DAIL +L L ++E I+ EL A E I LL+ +W + E++++++ + Sbjct: 419 QTDAILETQLYKLSQMEIEAIRDELGEKRARAEGIRRLLDDEDARWGIVKDELQDIRDEY 478 Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546 + RR+T AD ++ I E + V+++ GW++ ++S DL A+ + Sbjct: 479 TDE-----RRSTLVGPG-ADMEYTEEDYIVDEDVHVIVTRDGWVKRQGTYS-DLDAIRTR 531 Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606 +GD + AL T + + G YT + S G+G+ +Q L + + +V Sbjct: 532 DGDEVGWALAGSTRATVGFFTNYGTCYTTRITEIPSTTGYGDPVQKLFSFDDGEHVVGVV 591 Query: 607 VYD 609 +D Sbjct: 592 SFD 594 >gi|304408849|ref|ZP_07390470.1| DNA gyrase, A subunit [Shewanella baltica OS183] gi|307302852|ref|ZP_07582607.1| DNA gyrase, A subunit [Shewanella baltica BA175] gi|304352670|gb|EFM17067.1| DNA gyrase, A subunit [Shewanella baltica OS183] gi|306913212|gb|EFN43634.1| DNA gyrase, A subunit [Shewanella baltica BA175] Length = 916 Score = 397 bits (1021), Expect = e-108, Method: Compositional matrix adjust. Identities = 246/658 (37%), Positives = 372/658 (56%), Gaps = 62/658 (9%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 ++ +++ L+ YL YA+S I RA+PD+RDG KPVHRR++ AMSE+ D+ +KKS Sbjct: 7 SISPINIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELKNDWNKPYKKS 66 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 AR+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG++DGDSAAA RYTE R Sbjct: 67 ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYTLVDGQGNFGSVDGDSAAAMRYTEIR 126 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 M ++A +L ++++ VDF Y+ + P V P++ PNLL NG+SGIAVGMAT+IP HN Sbjct: 127 MDKLAHQLLADLEKETVDFVPNYDGTELIPAVLPTRVPNLLINGSSGIAVGMATNIPPHN 186 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 + E+ + LALI+ P +SIE+L+EYI GPDFPT II R+ I+++Y+ GRG +RA Sbjct: 187 LTEVVKGCLALIEEPSLSIEQLMEYIPGPDFPTAAII-NGRKGIIDAYKTGRGRAIMRAL 245 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315 VE G I+VTEIPYQV K+RLIEKIAEL+ K++ + +RDES +D ++ Sbjct: 246 ADVETEDNGRERIIVTEIPYQVNKARLIEKIAELVKDKKLEGISGLRDESDKDGMRIVIE 305 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 R ++++ +++ + M+ F +NM L+ G+ P++ L +L+ ++ HRREV+ RR Sbjct: 306 IKRGEVGEVVLNNLYAQTQMQCSFGINMVALTNGQ-PKLFNLKEMLECFILHRREVVTRR 364 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV----------------- 418 + F ++ R IL+ L +A NID IIA+I+ P V Sbjct: 365 TVFELRKARERAHILEALAVALANIDPIIALIKASPTPADAKVKLVEQGWELGHVQGMLE 424 Query: 419 --------------------SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458 ++ LTE Q AIL LRL L LE +I +E + LL Sbjct: 425 KAGDDAARPEWLEPQYGIRDGQYFLTEQQAQAILELRLHRLTGLEHDKIIAEYEELLEFI 484 Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518 + +L S ++ I E+ ++ + + G R T + D + + +I +E Sbjct: 485 AGLLFILRSPERLMEVIKEELVQILDEY------GDARRTVINANEVDMSL--EDLINEE 536 Query: 519 PITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570 + V +S+ G+ + + + +A K+ D ++ L A+T D IL S G Sbjct: 537 DVVVTLSHLGYAKYQPLTDYQAQRRGGKGKAATKVKDEDFVEKLLVANTHDTILCFSDFG 596 Query: 571 KAYTLPAGNL-LSGR-GHGEAIQLLIDLNHNQDIVTAFV----YDSTCKLLVVSSKGN 622 K Y L L L+ R G I L+ L+ + I TA + Y + +++ +S G Sbjct: 597 KMYWLKVYQLPLASRTARGRPIVNLLPLSDGERI-TAILPVREYAADKYIIMATSHGT 653 >gi|257457902|ref|ZP_05623061.1| DNA gyrase, A subunit [Treponema vincentii ATCC 35580] gi|257444615|gb|EEV19699.1| DNA gyrase, A subunit [Treponema vincentii ATCC 35580] Length = 838 Score = 397 bits (1021), Expect = e-108, Method: Compositional matrix adjust. Identities = 245/693 (35%), Positives = 392/693 (56%), Gaps = 33/693 (4%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 +S+ ++ Y+ Y++S I RA+PD+RDG KPVHRRI+++M E L + +K A+IV Sbjct: 15 ISIENEVKRAYIDYSMSVIVSRALPDVRDGLKPVHRRILYSMEEKNLRYSGPTRKCAKIV 74 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+V+G HPHGD SVYD+LVRL Q F RYP+I QGNFG I GD AAYRYTEA+M ++ Sbjct: 75 GDVLGSYHPHGDASVYDALVRLGQDFSLRYPVIHPQGNFGTIGGDPPAAYRYTEAKMARL 134 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 AE +++ + +D VDF +++ EP V P KFP LLANG+SGIAVGMAT++P HN++EI Sbjct: 135 AESMVEDIKKDTVDFIPNFDDSTQEPTVLPGKFPFLLANGSSGIAVGMATNMPPHNLREI 194 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 +A A IDNP+I+I++L +YI GPDFPTGGII ++ I ++++ GRG VR R+ +E Sbjct: 195 AQAVSAYIDNPDITIDELAKYIKGPDFPTGGIIF-GKKGIRQAFKTGRGKILVRGRFNIE 253 Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE--DVRIVLFPKN 317 +G I+ TE+PYQV + L+ KI EL K I + + DE+++ +R+V+ K Sbjct: 254 VDKKGKETIIFTEVPYQVNTTALVSKIGELAREKVIEGIAAVNDETSDRAGLRLVIELK- 312 Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377 R +++ +F + +++ F + +N+ +G PQ + L ++ ++AHR+EV+ RR Sbjct: 313 RGAIAKVVLNQLFSKTALQSSFGV-INLALVGGRPQTLTLKQLVGYFVAHRQEVVTRRVR 371 Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAII---RNEDKPKPVMVSRFSLTENQVDAILNL 434 F ++ + R IL+ L++A NIDE+I II R+ K ++ RFS + Q AI+++ Sbjct: 372 FDLKKAEERAHILRALIVAIDNIDEVIKIIRGSRDTASAKNALMERFSFDDVQAQAIVDM 431 Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494 +L+ L LE ++ EL L E + LL ++ I E E+ E F Sbjct: 432 QLKRLTSLEIEDLRKELQELEVLIEHLKDLLAHPEKILALIKQETNELAEKFGDD----- 486 Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL--------SALHFK 546 RRT VS + + +I+KE + V++SN G+I+ + + ++ Sbjct: 487 RRTDI--VSDEVEEINIEDLIKKEQMVVLVSNLGYIKRVPVTAYKRQNRGGKGSNSAALV 544 Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVT 604 E D + A T D I+ ++ +GKAY + + S G I+ L+ ++ +++I T Sbjct: 545 EDDFIDQIFTASTHDYIMFITNEGKAYWVKVHEIPEASRTSRGSHIKSLLAVSSDEEITT 604 Query: 605 AFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DH 660 + S LL+ ++ G V+ +G +K+ +K+ + TG D Sbjct: 605 IVSLKEFSSDTYLLMATAGGIVKKVQTDSFQNAKTRGIIAIKLDEGDKLVSAILTTGKDE 664 Query: 661 VAVVGENRKLLIFSIDQIPEMSRGK----GVRL 689 + +V + L S +I + R G+RL Sbjct: 665 LMLVTRQGQALRVSEAEIRDQGRASHGVIGIRL 697 >gi|226947229|ref|YP_002802320.1| DNA gyrase, A subunit [Clostridium botulinum A2 str. Kyoto] gi|226840756|gb|ACO83422.1| DNA gyrase, A subunit [Clostridium botulinum A2 str. Kyoto] Length = 846 Score = 397 bits (1021), Expect = e-108, Method: Compositional matrix adjust. Identities = 252/693 (36%), Positives = 404/693 (58%), Gaps = 36/693 (5%) Query: 12 LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71 L E + V + +++ Y+ YA+S I RA+PD+RDG KPVHRRII++M +GL Sbjct: 2 LNEGKILPVDVSKEMKKCYIDYAMSVIAGRALPDVRDGLKPVHRRIIYSMQGLGLAPEKG 61 Query: 72 FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131 ++K ARIVG+V+GK HPHGD +VY++LVR+AQ F RY L+ G GNFG++DGD AAA RY Sbjct: 62 YRKCARIVGDVLGKYHPHGDTAVYEALVRMAQNFSIRYTLVDGHGNFGSVDGDGAAAMRY 121 Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191 TEA+M++++ +++ ++++ VDF ++ E+ EP V PS+FPNLL NG+SGIAVGMAT+I Sbjct: 122 TEAKMSKISMELIKDINKNTVDFIPNFDGEEEEPSVLPSRFPNLLVNGSSGIAVGMATNI 181 Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251 P HN+ E+ + + LI+N +++I L+ I GPDFPT G+IV +R I E+Y GRG Sbjct: 182 PPHNLTEVIDGIIMLIENEDVNILDLMTKIKGPDFPTSGLIVGTR-GIREAYETGRGKVI 240 Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VR 310 +RA+ +EE +G I+VTEIPYQV K+RLIE +A L+ K+I + D+RDES D +R Sbjct: 241 IRAKAEIEE-EKGKNKIIVTEIPYQVNKARLIENMANLVKDKKINGISDLRDESDRDGMR 299 Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370 IV+ K R +P++++ ++ + ++ F + M L + PQ++ L IL ++ ++E Sbjct: 300 IVIELK-RDANPNIVLNQLYKHTKLQDTFGIIMLAL-VNNQPQILNLKEILVNYVEFQKE 357 Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQ 427 V+ RR+ F + R IL+GL IA +IDE+I +IR N + K +++ F+L+E Q Sbjct: 358 VIRRRTRFDLDKALARAHILEGLRIALDHIDEVIKLIRASKNTAEAKEGLMNNFNLSEKQ 417 Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487 AIL+++L+ L LE +I+ E L+ + +L+ + + I E+ E+K + Sbjct: 418 AQAILDMKLQRLTGLEREKIEEEYKELMEKISYFREILDKEELVLSIIKEELIEIKNKY- 476 Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSVD 539 G R T E+ + + + +IE + + V +++ G+I+ L K Sbjct: 477 -----GDERKT--EIVKGEHDIDIEDLIEDKKVIVTLTHGGYIKRLDMDTYSSQKRGGKG 529 Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEAIQLLIDLN 597 + A K+ D ++ T IL + GK Y L A + +GR G I LI + Sbjct: 530 IQATSTKQDDFIENMFVTSTHSTILFFTNRGKVYKLKAYEIPEAGRTAKGTNIVNLIPIE 589 Query: 598 HNQDIVTAFVY---DSTCKLLVVSSKGNAFIVEESEI--IANTRKGKTFLKVSSEEKMKL 652 +N+ I T D ++ + G I++++EI ++ RKG E+ + Sbjct: 590 NNEKIQTVIGLKDIDDMKHFVMCTRNG---IIKKTEISKYSSIRKGGLNAINLREDDELI 646 Query: 653 VVKVT--GDHVAVVGENRKLLIFSIDQIPEMSR 683 VK+T D + VV +N + F+ + + M R Sbjct: 647 DVKMTKGNDEIIVVTQNGYCIRFNEEDVRPMGR 679 >gi|224110064|ref|XP_002315402.1| predicted protein [Populus trichocarpa] gi|222864442|gb|EEF01573.1| predicted protein [Populus trichocarpa] Length = 932 Score = 397 bits (1020), Expect = e-108, Method: Compositional matrix adjust. Identities = 256/743 (34%), Positives = 406/743 (54%), Gaps = 44/743 (5%) Query: 28 ERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLH 87 E Y+AYA+S + RA+PD+RDG KPVHRRI+ AM E+GL FKK AR+VGEV+GK H Sbjct: 94 EAYMAYAMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSKKPFKKCARVVGEVLGKFH 153 Query: 88 PHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELI-LQG 146 PHGD +VYD+LVR+AQ F R PLI G GNFG++D D AA RYTE R+ + E + L Sbjct: 154 PHGDTAVYDALVRMAQDFSLRCPLIQGHGNFGSVDADPPAAMRYTECRLDGLTEAVFLAD 213 Query: 147 VDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALAL 206 +++D VDF ++ EP +FP++ P LL NG+SGIAVGMAT IP HN+ E+ + AL Sbjct: 214 LEQDTVDFVPNFDNSQKEPSLFPTRLPTLLLNGSSGIAVGMATKIPPHNLGELVDVLCAL 273 Query: 207 IDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSW 266 I NPE ++++LLEY+ GPDFPTGGII+ + I+++YR G+G VR + VE + + Sbjct: 274 IHNPEATLQELLEYMPGPDFPTGGIIM-GNQGILDAYRSGQGRIVVRGKTDVELLDSKTK 332 Query: 267 --CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDL 324 +++ EIPYQ K+ L+EKIAEL+ K + + DIRDES ++ R DP + Sbjct: 333 RNAVIIKEIPYQTNKASLVEKIAELVEDKNLDGISDIRDESDRSGMRIVIELKRGADPSI 392 Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384 ++ +++ L+ +++ F NM + G+ P+ M L +L+ +L R V+ RR+ F++ Sbjct: 393 VLNNLYRLTPLQSSFSCNMVGILDGQ-PKQMGLKELLQAFLDFRCSVVERRAMFKLSEAQ 451 Query: 385 RRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAILNLRLRSLRK 441 +R I++G++ N+D ++ IIR + + FSL+E Q +AIL++ LR L Sbjct: 452 KRRHIVEGVMAGLDNLDRVVDIIRKASSNAIASADLRNEFSLSEKQAEAILDISLRRLTL 511 Query: 442 LEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCE 501 LE + E +L+ + K++ LL+S I E E+K FS RR+ + Sbjct: 512 LEGKKFVEESKSLMEQITKLEELLSSRGNILQLIEQEAVELKNKFSNP-----RRSMLED 566 Query: 502 VSRADKATLQQA-MIEKEPITVVISNRGWIRSLKSHSVDL--------SALHFKEGDSLK 552 +D L+ +I E + + IS +G+++ +K ++ +L S ++ D++ Sbjct: 567 ---SDSGQLEDIDVIPNEEMLLAISEKGYVKRMKPNTFNLQNRGTIGKSVGKLRDSDAMS 623 Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDI-----VTA 605 + H DR+L S G Y+ PA + + G + + L+ + I V+ Sbjct: 624 DFIVCHAHDRVLYFSDQGIVYSAPAYKIPECTRAAAGTPLIQFLSLSDGERITSIIPVSE 683 Query: 606 FVYDSTCKLLVVSSKGNAFI--VEESEIIANTRKGKTFLKVSSEEKMKLVVKVT-GDHVA 662 FV D +L V N +I V + A G +++ +++K V T GD VA Sbjct: 684 FVEDQFLLMLTV----NGYIKKVSLNSFSAIRSTGIIAIQLVPGDELKWVRCCTNGDLVA 739 Query: 663 VVGENRKLLIFSIDQIPEMSR----GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRS 718 + +N +++ S + I + R G +RL+ D+I + + L + Sbjct: 740 MASQNGMVILTSCENIRALGRNTRGGVAMRLREGDKIASMDIIPASLQKDLEVASKDSEN 799 Query: 719 YNRSENDLLGWLGKRGGVGSLVP 741 N+ L ++ + G G VP Sbjct: 800 NNKGTGPWLLFVSESGH-GKRVP 821 >gi|170756835|ref|YP_001779633.1| DNA gyrase subunit A [Clostridium botulinum B1 str. Okra] gi|169122047|gb|ACA45883.1| DNA gyrase, A subunit [Clostridium botulinum B1 str. Okra] Length = 861 Score = 397 bits (1020), Expect = e-108, Method: Compositional matrix adjust. Identities = 252/693 (36%), Positives = 404/693 (58%), Gaps = 36/693 (5%) Query: 12 LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71 L E + V + +++ Y+ YA+S I RA+PD+RDG KPVHRRII++M +GL Sbjct: 2 LNEGKILPVDVSKEMKKCYIDYAMSVIAGRALPDVRDGLKPVHRRIIYSMQGLGLAPEKG 61 Query: 72 FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131 ++K ARIVG+V+GK HPHGD +VY++LVR+AQ F RY L+ G GNFG++DGD AAA RY Sbjct: 62 YRKCARIVGDVLGKYHPHGDTAVYEALVRMAQNFSIRYTLVDGHGNFGSVDGDGAAAMRY 121 Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191 TEA+M++++ +++ ++++ VDF ++ E+ EP V PS+FPNLL NG+SGIAVGMAT+I Sbjct: 122 TEAKMSKISMELIKDINKNTVDFIPNFDGEEEEPSVLPSRFPNLLVNGSSGIAVGMATNI 181 Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251 P HN+ E+ + + LI+N +++I L+ I GPDFPT G+IV +R I E+Y GRG Sbjct: 182 PPHNLTEVIDGIIMLIENEDVNILDLMTKIKGPDFPTSGLIVGTR-GIREAYETGRGKVI 240 Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VR 310 +RA+ +EE +G I+VTEIPYQV K+RLIE +A L+ K+I + D+RDES D +R Sbjct: 241 IRAKAEIEE-EKGKNKIIVTEIPYQVNKARLIENMANLVKDKKINGISDLRDESDRDGMR 299 Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370 IV+ K R +P++++ ++ + ++ F + M L + PQ++ L IL ++ ++E Sbjct: 300 IVIELK-RDANPNIVLNQLYKHTKLQDTFGIIMLAL-VNNQPQILNLKEILVNYVEFQKE 357 Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQ 427 V+ RR+ F + R IL+GL IA +IDE+I +IR N + K +++ F+L+E Q Sbjct: 358 VIRRRTRFDLDKALARAHILEGLRIALDHIDEVIKLIRASKNTAEAKEGLMNNFNLSEKQ 417 Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487 AIL+++L+ L LE +I+ E L+ + +L+ + + I E+ E+K + Sbjct: 418 AQAILDMKLQRLTGLEREKIEEEYKELMEKISYFREILDKEELVLSIIKEELIEIKNKY- 476 Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSVD 539 G R T E+ + + + +IE + + V +++ G+I+ L K Sbjct: 477 -----GDERKT--EIVKGEHDIDIEDLIEDKKVIVTLTHGGYIKRLDMDTYSSQKRGGKG 529 Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEAIQLLIDLN 597 + A K+ D ++ T IL + GK Y L A + +GR G I LI + Sbjct: 530 IQATSTKQDDFIENMFVTSTHSTILFFTNRGKVYKLKAYEIPEAGRTAKGTNIVNLIPIE 589 Query: 598 HNQDIVTAFVY---DSTCKLLVVSSKGNAFIVEESEI--IANTRKGKTFLKVSSEEKMKL 652 +N+ I T D ++ + G I++++EI ++ RKG E+ + Sbjct: 590 NNEKIQTVIGLKDIDDMKHFVMCTRNG---IIKKTEISKYSSIRKGGLNAINLREDDELI 646 Query: 653 VVKVT--GDHVAVVGENRKLLIFSIDQIPEMSR 683 VK+T D + VV +N + F+ + + M R Sbjct: 647 DVKMTKGNDEIIVVTQNGYCIRFNEEDVRPMGR 679 >gi|168181122|ref|ZP_02615786.1| DNA gyrase, A subunit [Clostridium botulinum NCTC 2916] gi|182668086|gb|EDT80065.1| DNA gyrase, A subunit [Clostridium botulinum NCTC 2916] Length = 856 Score = 397 bits (1020), Expect = e-108, Method: Compositional matrix adjust. Identities = 252/693 (36%), Positives = 404/693 (58%), Gaps = 36/693 (5%) Query: 12 LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71 L E + V + +++ Y+ YA+S I RA+PD+RDG KPVHRRII++M +GL Sbjct: 2 LNEGKILPVDVSKEMKKCYIDYAMSVIAGRALPDVRDGLKPVHRRIIYSMQGLGLAPEKG 61 Query: 72 FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131 ++K ARIVG+V+GK HPHGD +VY++LVR+AQ F RY L+ G GNFG++DGD AAA RY Sbjct: 62 YRKCARIVGDVLGKYHPHGDTAVYEALVRMAQNFSIRYTLVDGHGNFGSVDGDGAAAMRY 121 Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191 TEA+M++++ +++ ++++ VDF ++ E+ EP V PS+FPNLL NG+SGIAVGMAT+I Sbjct: 122 TEAKMSKISMELIKDINKNTVDFIPNFDGEEEEPSVLPSRFPNLLVNGSSGIAVGMATNI 181 Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251 P HN+ E+ + + LI+N +++I L+ I GPDFPT G+IV +R I E+Y GRG Sbjct: 182 PPHNLTEVIDGIIMLIENEDVNILDLMTKIKGPDFPTSGLIVGTR-GIREAYETGRGKVI 240 Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VR 310 +RA+ +EE +G I+VTEIPYQV K+RLIE +A L+ K+I + D+RDES D +R Sbjct: 241 IRAKAEIEE-EKGKNKIIVTEIPYQVNKARLIENMANLVKDKKINGISDLRDESDRDGMR 299 Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370 IV+ K R +P++++ ++ + ++ F + M L + PQ++ L IL ++ ++E Sbjct: 300 IVIELK-RDANPNIVLNQLYKHTKLQDTFGIIMLAL-VNNQPQILNLKEILVNYVEFQKE 357 Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQ 427 V+ RR+ F + R IL+GL IA +IDE+I +IR N + K +++ F+L+E Q Sbjct: 358 VIRRRTRFDLDKALARAHILEGLRIALDHIDEVIKLIRASKNTAEAKEGLMNNFNLSEKQ 417 Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487 AIL+++L+ L LE +I+ E L+ + +L+ + + I E+ E+K + Sbjct: 418 AQAILDMKLQRLTGLEREKIEEEYKELMEKISYFREILDKEELVLSIIKEELIEIKNKY- 476 Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSVD 539 G R T E+ + + + +IE + + V +++ G+I+ L K Sbjct: 477 -----GDERKT--EIVKGEHDIDIEDLIEDKKVIVTLTHGGYIKRLDMDTYSSQKRGGKG 529 Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEAIQLLIDLN 597 + A K+ D ++ T IL + GK Y L A + +GR G I LI + Sbjct: 530 IQATSTKQDDFIENMFVTSTHSTILFFTNRGKVYKLKAYEIPEAGRTAKGTNIVNLIPIE 589 Query: 598 HNQDIVTAFVY---DSTCKLLVVSSKGNAFIVEESEI--IANTRKGKTFLKVSSEEKMKL 652 +N+ I T D ++ + G I++++EI ++ RKG E+ + Sbjct: 590 NNEKIQTVIGLKDIDDMKHFVMCTRNG---IIKKTEISKYSSIRKGGLNAINLREDDELI 646 Query: 653 VVKVT--GDHVAVVGENRKLLIFSIDQIPEMSR 683 VK+T D + VV +N + F+ + + M R Sbjct: 647 DVKMTKGNDEIIVVTQNGYCIRFNEEDVRPMGR 679 >gi|302543958|ref|ZP_07296300.1| DNA gyrase, A subunit [Streptomyces hygroscopicus ATCC 53653] gi|302461576|gb|EFL24669.1| DNA gyrase, A subunit [Streptomyces himastatinicus ATCC 53653] Length = 870 Score = 397 bits (1020), Expect = e-108, Method: Compositional matrix adjust. Identities = 235/627 (37%), Positives = 360/627 (57%), Gaps = 34/627 (5%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 ++AV L ++ YL YA+S I RA+PD+RDG KPVHRR+++AM + G F K A Sbjct: 21 IEAVGLETEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMYDGGYRPEKGFYKCA 80 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+V+G HPHGD S+YD+LVRLAQ + R PL+ GNFG+ D AAA RYTE +M Sbjct: 81 RVVGDVMGTYHPHGDSSIYDALVRLAQSWSMRMPLVDSNGNFGSPGNDPAAAMRYTECKM 140 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 +A +L+ +DE+ VDF+D Y+ + EP V P++FPNLL NG++GIAVGMAT+IP HN+ Sbjct: 141 APLAMEMLRDIDEETVDFQDNYDGRNQEPTVLPARFPNLLVNGSAGIAVGMATNIPPHNL 200 Query: 197 QEICEAALALIDNPEISIEKLLEYII----GPDFPTGGIIVESRESIVESYRLGRGGFRV 252 +E+ E A + NPE + E+LL+ ++ GPDFPTG ++V R+ I E+YR GRG + Sbjct: 201 REVAEGAQWFLANPEATQEELLDALVDRIKGPDFPTGALVV-GRKGIEEAYRTGRGSITM 259 Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV--R 310 RA VEE+ +G C+VVTE+PYQV L +KIA+L+ RI + D+RDE++ R Sbjct: 260 RAVVEVEEI-QGRQCLVVTELPYQVNPDNLAQKIADLVKDARIGGIADVRDETSSRTGQR 318 Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370 +V+ K R +++ +++ +D++T F NM L G VP+ + LD ++ W+ H+ E Sbjct: 319 LVIVLK-RDAVAKVVLNNLYKHTDLQTNFGANMLALVDG-VPRTLSLDAFIRNWVTHQIE 376 Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQ 427 V+ RR+ FR++ + R IL+GLL A IDE+IA+IR D + ++ + E Q Sbjct: 377 VIVRRTRFRLRKAEERAHILRGLLKALDAIDEVIALIRRSDTVDTARGGLMELLEIDEIQ 436 Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487 +AIL ++LR L LE +I E D L A+ + +++L S ++Q I+ E+ + E F Sbjct: 437 ANAILEMQLRRLAALERQKITQEHDELQAKINEYNAILASPERQRQIISEELTALVEKFG 496 Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVD 539 RR+ D + +I +E I V I+ G++ RS K Sbjct: 497 DD-----RRSKLVPF---DGDMSIEDLIAEEDIVVTITRGGYLKRTKTEDYRSQKRGGKG 548 Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEAIQLLIDLN 597 + K+ D + + T +L + G+ Y A L +GR G+ + L+ Sbjct: 549 VRGTKLKQDDIVDHFFVSTTHHWLLFFTNKGRVYRAKAYELPDAGREARGQHVANLLAFQ 608 Query: 598 HNQDIVTAFV---YDSTCKLLVVSSKG 621 ++ I YD+ L++ + G Sbjct: 609 PDEQIARILAIRDYDAVPYLVLATKSG 635 >gi|322804285|emb|CBZ01835.1| DNA gyrase subunit A [Clostridium botulinum H04402 065] Length = 831 Score = 397 bits (1020), Expect = e-108, Method: Compositional matrix adjust. Identities = 252/693 (36%), Positives = 404/693 (58%), Gaps = 36/693 (5%) Query: 12 LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71 L E + V + +++ Y+ YA+S I RA+PD+RDG KPVHRRII++M +GL Sbjct: 2 LNEGKILPVDVSKEMKKCYIDYAMSVIAGRALPDVRDGLKPVHRRIIYSMQGLGLAPEKG 61 Query: 72 FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131 ++K ARIVG+V+GK HPHGD +VY++LVR+AQ F RY L+ G GNFG++DGD AAA RY Sbjct: 62 YRKCARIVGDVLGKYHPHGDTAVYEALVRMAQNFSIRYTLVDGHGNFGSVDGDGAAAMRY 121 Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191 TEA+M++++ +++ ++++ VDF ++ E+ EP V PS+FPNLL NG+SGIAVGMAT+I Sbjct: 122 TEAKMSKISMELIKDINKNTVDFIPNFDGEEEEPSVLPSRFPNLLVNGSSGIAVGMATNI 181 Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251 P HN+ E+ + + LI+N +++I L+ I GPDFPT G+IV +R I E+Y GRG Sbjct: 182 PPHNLTEVIDGIIMLIENEDVNILDLMTKIKGPDFPTSGLIVGTR-GIREAYETGRGKVI 240 Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VR 310 +RA+ +EE +G I+VTEIPYQV K+RLIE +A L+ K+I + D+RDES D +R Sbjct: 241 IRAKAEIEE-EKGKNKIIVTEIPYQVNKARLIENMANLVKDKKINGISDLRDESDRDGMR 299 Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370 IV+ K R +P++++ ++ + ++ F + M L + PQ++ L IL ++ ++E Sbjct: 300 IVIELK-RDANPNIVLNQLYKHTKLQDTFGIIMLAL-VNNQPQILNLKEILVNYVEFQKE 357 Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQ 427 V+ RR+ F + R IL+GL IA +IDE+I +IR N + K +++ F+L+E Q Sbjct: 358 VIRRRTRFDLDKALARAHILEGLRIALDHIDEVIKLIRASKNTAEAKEGLMNNFNLSEKQ 417 Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487 AIL+++L+ L LE +I+ E L+ + +L+ + + I E+ E+K + Sbjct: 418 AQAILDMKLQRLTGLEREKIEEEYKELMEKISYFREILDKEELVLSIIKEELIEIKNKY- 476 Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSVD 539 G R T E+ + + + +IE + + V +++ G+I+ L K Sbjct: 477 -----GDERKT--EIVKGEHDIDIEDLIEDKKVIVTLTHGGYIKRLDMDTYSSQKRGGKG 529 Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEAIQLLIDLN 597 + A K+ D ++ T IL + GK Y L A + +GR G I LI + Sbjct: 530 IQATSTKQDDFIENMFVTSTHSTILFFTNRGKVYKLKAYEIPEAGRTAKGTNIVNLIPIE 589 Query: 598 HNQDIVTAFVY---DSTCKLLVVSSKGNAFIVEESEI--IANTRKGKTFLKVSSEEKMKL 652 +N+ I T D ++ + G I++++EI ++ RKG E+ + Sbjct: 590 NNEKIQTVIGLKDIDDMKHFVMCTRNG---IIKKTEISKYSSIRKGGLNAINLREDDELI 646 Query: 653 VVKVT--GDHVAVVGENRKLLIFSIDQIPEMSR 683 VK+T D + VV +N + F+ + + M R Sbjct: 647 DVKMTKGNDEIIVVTQNGYCIRFNEEDVRPMGR 679 >gi|126174283|ref|YP_001050432.1| DNA gyrase subunit A [Shewanella baltica OS155] gi|153000807|ref|YP_001366488.1| DNA gyrase subunit A [Shewanella baltica OS185] gi|217973234|ref|YP_002357985.1| DNA gyrase subunit A [Shewanella baltica OS223] gi|125997488|gb|ABN61563.1| DNA gyrase subunit A [Shewanella baltica OS155] gi|151365425|gb|ABS08425.1| DNA gyrase, A subunit [Shewanella baltica OS185] gi|217498369|gb|ACK46562.1| DNA gyrase, A subunit [Shewanella baltica OS223] Length = 916 Score = 397 bits (1020), Expect = e-108, Method: Compositional matrix adjust. Identities = 233/605 (38%), Positives = 349/605 (57%), Gaps = 55/605 (9%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 ++ +++ L+ YL YA+S I RA+PD+RDG KPVHRR++ AMSE+ D+ +KKS Sbjct: 7 SISPINIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELKNDWNKPYKKS 66 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 AR+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG++DGDSAAA RYTE R Sbjct: 67 ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYTLVDGQGNFGSVDGDSAAAMRYTEIR 126 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 M ++A +L ++++ VDF Y+ + P V P++ PNLL NG+SGIAVGMAT+IP HN Sbjct: 127 MDKLAHQLLADLEKETVDFVPNYDGTELIPAVLPTRVPNLLINGSSGIAVGMATNIPPHN 186 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 + E+ + LALI+ P +SIE+L+EYI GPDFPT II R+ I+++Y+ GRG +RA Sbjct: 187 LTEVVKGCLALIEEPSLSIEQLMEYIPGPDFPTAAII-NGRKGIIDAYKTGRGRAIMRAL 245 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315 VE G I+VTEIPYQV K+RLIEKIAEL+ K++ + +RDES +D ++ Sbjct: 246 ADVETEDNGRERIIVTEIPYQVNKARLIEKIAELVKDKKLEGISGLRDESDKDGMRIVIE 305 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 R ++++ +++ + M+ F +NM L+ G+ P++ L +L+ ++ HRREV+ RR Sbjct: 306 IKRGEVGEVVLNNLYAQTQMQCSFGINMVALTNGQ-PKLFNLKEMLECFILHRREVVTRR 364 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV----------------- 418 + F ++ R IL+ L +A NID IIA+I+ P V Sbjct: 365 TVFELRKARERAHILEALAVALANIDPIIALIKASPTPADAKVKLVEQGWELGHVQGMLE 424 Query: 419 --------------------SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458 ++ LTE Q AIL LRL L LE +I +E + LL Sbjct: 425 KAGDDAARPEWLEPQYGIRDGQYFLTEQQAQAILELRLHRLTGLEHDKIIAEYEELLEFI 484 Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518 + +L S ++ I E+ ++ + + G R T + D + + +I +E Sbjct: 485 AGLLFILRSPERLMEVIKEELVQILDEY------GDARRTVINANEVDMSL--EDLINEE 536 Query: 519 PITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570 + V +S+ G+ + + + +A K+ D ++ L A+T D IL S G Sbjct: 537 DVVVTLSHLGYAKYQPLTDYQAQRRGGKGKAATKVKDEDFVEKLLVANTHDTILCFSDFG 596 Query: 571 KAYTL 575 K Y L Sbjct: 597 KMYWL 601 >gi|113475568|ref|YP_721629.1| DNA topoisomerase IV subunit A [Trichodesmium erythraeum IMS101] gi|110166616|gb|ABG51156.1| DNA topoisomerase IV subunit A [Trichodesmium erythraeum IMS101] Length = 873 Score = 397 bits (1020), Expect = e-108, Method: Compositional matrix adjust. Identities = 273/813 (33%), Positives = 426/813 (52%), Gaps = 96/813 (11%) Query: 12 LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71 L+ V SL +++ YL YA+S I RA+PD+RDG KPVHRRII+AM E+GL Sbjct: 7 LLSGKVITTSLHTEMQQSYLEYAMSVIVGRALPDVRDGQKPVHRRIIYAMHELGLTPDRP 66 Query: 72 FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131 F+K AR+VG+V+GK HPHGDQ+VYD++VR+ Q F RYPL+ G GNFG+ID D AAA RY Sbjct: 67 FRKCARVVGDVLGKYHPHGDQAVYDAMVRMIQNFSSRYPLLDGHGNFGSIDNDPAAAMRY 126 Query: 132 TEARMTQVA-ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190 TE+R+ + E +L + E VDF + ++ EP V P++ P LL NG+SGIAVGMAT+ Sbjct: 127 TESRLASIGNEGLLTQISEAIVDFTNNFDGSQQEPKVLPAQLPFLLLNGSSGIAVGMATN 186 Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250 +P HN+ E+ + +ALIDNP IS +KL E I GPDFPTGG IV S + I+++Y GRG Sbjct: 187 VPPHNLGEVVDGLIALIDNPNISDQKLFELIPGPDFPTGGEIV-STDGIIDTYTKGRGSI 245 Query: 251 RVRARWCVEEV--GRG---SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305 +R +E+V GRG IVVTE+P+QV K+ IEK A+L+ A +I + D+RDES Sbjct: 246 PMRGVATIEQVPTGRGRRTKTAIVVTELPFQVNKAGWIEKTADLVNAGKIEGIADLRDES 305 Query: 306 AED-VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364 +R+V+ K R DP +++ ++ +D+ ++F M L G+ PQ + L +L+E+ Sbjct: 306 DRSGIRVVIELK-READPSVVLHHLYRNTDLLSKFGAIMLALVNGQ-PQQLSLRTLLQEF 363 Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RF 421 L R E L R + +Q R I+ GLL A +D +I I+RN VS Sbjct: 364 LNFREETLTRHYTHELQIAQARSHIVAGLLTALKELDRVIDILRNAPDGNTAKVSFQESL 423 Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481 L+ENQ DAIL + +R L LE+ +++ E + L+ + +++++LL Q + E+R Sbjct: 424 GLSENQADAILAMPMRRLTGLEKQKLEEEHEQLMGKIQELENLLGDRHQLLKALKKELRT 483 Query: 482 VKEIFSKSTDLGRRRT------------TFCEVSRADK---------------------- 507 +K ++ RRT F +S+ K Sbjct: 484 LKRKYNDP-----RRTRIIDQIKLKNADDFASISQQKKYLEAGNKEIDIKTKGRVIKSKN 538 Query: 508 -------ATLQQAMIEKEPITVVISNRGWIRSLKS-----HSVD-LSALHFKEGDSLKIA 554 TL+ A E + + S+RG++R + + + +D S + + + Sbjct: 539 ITVKSPILTLEAAPPPTEKVVIEFSHRGYVRRIPAKGFEKYKIDKKSHITMENSEDFTTN 598 Query: 555 LHAHTTDRIL-LLSTDGKAYTLPAGNLLSG------RGHGEAIQLLIDL----------N 597 + TTD+ L LL+ GKAY L N+ S R + + L+ L Sbjct: 599 IIEATTDKTLVLLTRTGKAYPLKVNNIPSASNRSTIRNENKGVPLVTLLPPSATKEITDA 658 Query: 598 HNQDIVTAFVYDSTCK---LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV- 653 + I+ F+ + + L++++ G + S++ +G T +K+ +++++ V Sbjct: 659 RKEIIIGQFILNEAKENKDLIMLTQNGKIKRLCLSDLSDMRNRGVTVIKLKEDDELRYVS 718 Query: 654 VKVTGDHVAVVGENRKLLIFSID--QIPEMSRG----KGVRLQSYKDGGISDVICFKICE 707 + TG+ V + +LL ID ++P M R + RL+ ++ V C + Sbjct: 719 LGKTGEQVVLATSGGRLLRLQIDDEKLPLMGRAAQGSQATRLRKQEEL----VGCVTLDI 774 Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740 G + + SY + + RGG+G V Sbjct: 775 GSNLLLVSQHSYGKQIPVTALRVANRGGIGQNV 807 >gi|295084194|emb|CBK65717.1| DNA gyrase subunit A [Bacteroides xylanisolvens XB1A] Length = 858 Score = 397 bits (1020), Expect = e-108, Method: Compositional matrix adjust. Identities = 241/663 (36%), Positives = 381/663 (57%), Gaps = 38/663 (5%) Query: 12 LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71 L ++ + +++ ++ Y+ Y++S I RA+PD+RDGFKPVHRRI++ M E+G Sbjct: 2 LEQDRIIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILYGMMELGNTSDKP 61 Query: 72 FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131 +KKSARIVGEV+GK HPHGD SVY ++VR+AQ + RYPL+ GQGNFG++DGDS AA RY Sbjct: 62 YKKSARIVGEVLGKYHPHGDSSVYFAMVRMAQEWAMRYPLVDGQGNFGSVDGDSPAAMRY 121 Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191 TEAR+ ++ E ++ + ++ VDF ++ EP V P++ PNLL NG SGIAVGMAT++ Sbjct: 122 TEARLNKLGEAMMDDLYKETVDFEPNFDNTLVEPKVMPTRIPNLLVNGASGIAVGMATNM 181 Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251 P HN+ E+ EA A IDNPEI++E+L+E++ PDFPTGG I + E+Y GRG Sbjct: 182 PPHNLSEVIEACEAYIDNPEITVEELMEFVKAPDFPTGGFIY-GVSGVREAYLTGRGRVI 240 Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VR 310 +RA+ +E G+ IV+TEIPY V K+ LI+ IA+L+ K+I + + DES D +R Sbjct: 241 MRAKAEIES-GQTHDKIVITEIPYNVNKAELIKYIADLVNDKKIEGISNANDESDRDGMR 299 Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370 IV+ K R + +++ ++ ++ ++T F +N L GR P+ + L ++K ++ HR E Sbjct: 300 IVIDIK-RDANASVVLNKLYKMTALQTSFGVNNVALVHGR-PKTLNLRDLIKYFIEHRHE 357 Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQ 427 V+ RR+ F ++ R IL+GL+IA NIDE+I IIR P ++ RF+LTE Q Sbjct: 358 VVIRRTQFDLRKAKERAHILEGLIIASDNIDEVIRIIRAAKTPNDAIAGLIERFNLTEIQ 417 Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487 AI+ +RLR L L + Q+ +E + ++ + ++S+L + + E+ EVK Sbjct: 418 ARAIVEMRLRQLTGLMQDQLHAEYEEIMKQIAYLESILADDEVCRQVMKDELLEVK---- 473 Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVD 539 T G R + E+ + + + + + + IS+ G+I R+ V Sbjct: 474 --TKYGDERRS--EIVYSSEEFNPEDFYADDQMIITISHMGYIKRTPLTEFRAQNRGGVG 529 Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLN 597 ++ D ++ A + ++ + GK Y L + G G AIQ L++++ Sbjct: 530 SKGTETRDEDFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTKNSKGRAIQNLLNID 589 Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG---KTFLKVSSEEKMKLVV 654 + D VTA+ L V S ++ + ++ T+KG KT L+ S + V Sbjct: 590 SD-DNVTAY--------LRVKSLEDSEFINSHYVLFCTKKGVIKKTLLEQYSRPRQNGVN 640 Query: 655 KVT 657 +T Sbjct: 641 AIT 643 >gi|281357344|ref|ZP_06243833.1| DNA gyrase, A subunit [Victivallis vadensis ATCC BAA-548] gi|281316375|gb|EFB00400.1| DNA gyrase, A subunit [Victivallis vadensis ATCC BAA-548] Length = 885 Score = 397 bits (1020), Expect = e-108, Method: Compositional matrix adjust. Identities = 237/642 (36%), Positives = 372/642 (57%), Gaps = 40/642 (6%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 V++ + YL Y+LS RAIPD+RDG KPV+RRI++AM ++GL A K AR+V Sbjct: 11 VNIEDIMHTAYLQYSLSVNVGRAIPDVRDGLKPVNRRILYAMRQLGLGKSHATVKCARVV 70 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 GEV+GK HPHGD ++YD+LVRLAQ F R PLI GQGNFGNIDGD AAA RYTE RM ++ Sbjct: 71 GEVMGKYHPHGDAAIYDALVRLAQDFSMRNPLIEGQGNFGNIDGDPAAASRYTECRMERL 130 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 AE +L +++D V+ ++E ++EP V P+++P LL NGT+GI VGMATSIP HN+ E+ Sbjct: 131 AEELLADIEKDTVNMIPNFDESETEPEVLPARYPQLLVNGTTGIGVGMATSIPPHNLGEV 190 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW-CV 258 +A + L+DNP+ ++++L+EY+ GPDFPTG II R S+ + Y+ G G ++RA+ + Sbjct: 191 IDATICLLDNPKATVDELMEYLPGPDFPTGAII-RGRYSMRQFYQTGHGSIKIRAKADII 249 Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE--DVRIVLFPK 316 E+ GR I+V+EIPY + K +L++KIAEL+ KRI + +RDES++ +RIV+ K Sbjct: 250 EKDGREQ--IIVSEIPYAICKEQLVKKIAELVNDKRITGISGLRDESSKRTGMRIVIEIK 307 Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376 ++ +++ +F + +ET M V+ R P+ M L +L+ ++ HR EV+ RR+ Sbjct: 308 RGAMG-SVVLNQLFAHTMLETTIGCTMLVVDHNR-PRTMNLVQVLQAYIDHRLEVIVRRT 365 Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVDAILN 433 F ++ R IL+GL+ A NI++++ IIR + +++RF T+ QVDAIL+ Sbjct: 366 LFELKKAQARAHILEGLMKALANINDVVQIIRESRSRQDAAANLIARFEFTQIQVDAILD 425 Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493 +RL L L + +E + L E + +L S + Q I E++E++E ++ Sbjct: 426 MRLHQLTGLAIETLTAEYEELKKRIEYLTALAASREMQLGVIKDELKEIREKYADP---- 481 Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DLSALHF 545 RRT E++ D +I + + +SN G+I+ + + + + + Sbjct: 482 -RRT---EITIDDTDLNIADLIPRHSCVITVSNTGYIKRVPADTYRTQHRGGKGIIGMET 537 Query: 546 KEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQ 600 KE D ++ +A + D I + G Y +P G S G G AI +I + + Sbjct: 538 KEEDHVEHLFNADSHDIIFFFTDRGFMYWLNVYEIPEG---SRTGKGRAITNMIKVEPGE 594 Query: 601 DIVTAFV-----YDSTCKLLVVSSKGNAFIVEESEIIANTRK 637 I +D K +V++S+ E + N R+ Sbjct: 595 KICAMLTVRQEEFDDPNKYIVMASRRGFIKKSELALFKNLRR 636 >gi|332667547|ref|YP_004450335.1| DNA gyrase subunit A [Haliscomenobacter hydrossis DSM 1100] gi|332336361|gb|AEE53462.1| DNA gyrase, A subunit [Haliscomenobacter hydrossis DSM 1100] Length = 845 Score = 397 bits (1020), Expect = e-108, Method: Compositional matrix adjust. Identities = 224/609 (36%), Positives = 372/609 (61%), Gaps = 26/609 (4%) Query: 13 VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72 +++ + V++ ++ Y+ Y++S I RA+PD+RDG KPV RR+++ MS++G+ + A Sbjct: 3 LDQRIIPVNIEDEMKSAYIDYSMSVIVSRALPDVRDGLKPVQRRVMYGMSDLGVTYNKAH 62 Query: 73 KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132 KKSARIVGEV+GK HPHGD SVYD++VR+AQ + RYPLI QGNFGNIDGD AA RYT Sbjct: 63 KKSARIVGEVLGKYHPHGDTSVYDTMVRMAQDWSLRYPLIDPQGNFGNIDGDGPAAMRYT 122 Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192 EARM ++A+ ++ +++D V+F + +++ +EP V P++FPNLL NG +GIAVGMAT++ Sbjct: 123 EARMRKIADELMADLEKDTVNFTNNFDDTLTEPSVMPTRFPNLLVNGATGIAVGMATNMM 182 Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252 HN+ E+ + +A ID+PEI+I++L++YI+ PDFPTGGII I + +R GRG + Sbjct: 183 PHNLGEVIDGVIATIDDPEITIDELMKYILAPDFPTGGIIY-GMSGIRDGFRTGRGRVVL 241 Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE-DVRI 311 R + +E G I++TE+PYQV S L EKIA+L+ KRI + I +ES +R+ Sbjct: 242 RGKVEIETTKTGKEQIIITEVPYQVNISSLEEKIADLVNEKRIDGISAISNESNRMGIRV 301 Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371 VL K ++ +++ ++ S +++ + +N L GR P + + +++E++ R EV Sbjct: 302 VLDVKRDAI-AKVVLSQLYKYSPLQSSYGINNVALVDGR-PYTLNIKDMIEEFIKFRLEV 359 Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQV 428 + RR+ F ++ + R IL+GLLIA ++D++IA+IR D+ + ++S F L+E Q Sbjct: 360 VVRRTKFDLRKAEERAHILEGLLIALDHLDQVIALIRASRTVDEAREGLMSNFGLSEIQA 419 Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488 AIL++RL+ L LE ++++E + + + ++S+LNS + + + I E+ E+K F Sbjct: 420 KAILDMRLQRLTGLERDKVRNEYNEIKKLIDYLNSILNSEELRRSIIKDELAEIKANFGD 479 Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--------SLKSHSVDL 540 + RRT + AD + MI++E + + IS+ G+I+ Sbjct: 480 A-----RRTV---IEAADGEINMEDMIKEEEVVITISHLGYIKRTPVSEFRQQSRGGRGS 531 Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNH 598 ++ D ++ +T +LL ++ G+ Y L + + G AIQ ++ + Sbjct: 532 RGSKTRDEDFIEHMFVTNTHHYLLLFTSAGRCYWLKGYEIPEAAKTATGRAIQNILAI-P 590 Query: 599 NQDIVTAFV 607 +D V AF+ Sbjct: 591 KEDKVKAFI 599 >gi|331700401|ref|YP_004397360.1| DNA gyrase subunit A [Lactobacillus buchneri NRRL B-30929] gi|329127744|gb|AEB72297.1| DNA gyrase, A subunit [Lactobacillus buchneri NRRL B-30929] Length = 850 Score = 397 bits (1020), Expect = e-108, Method: Compositional matrix adjust. Identities = 255/722 (35%), Positives = 399/722 (55%), Gaps = 58/722 (8%) Query: 5 NISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEM 64 N N + + V V L + +L YA+S I RA+PD+RDG KPVHRRI++ M E+ Sbjct: 3 NKDNHDEPIAGRVTNVDLSKKMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYDMHEL 62 Query: 65 GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124 G+ +KKSARIVG+V+GK HPHGD +VY+S+VR+AQ F RY L+ G GNFG++DGD Sbjct: 63 GVTPDKPYKKSARIVGDVLGKYHPHGDTAVYESMVRMAQDFSYRYMLVDGHGNFGSVDGD 122 Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184 AAA RYTEAR++++A +L+ +++D +DF+ Y+ + EP V PS+FPNLL NG SGIA Sbjct: 123 GAAAMRYTEARLSKIAMEMLRDINKDTIDFQPNYDGTEREPSVLPSRFPNLLVNGASGIA 182 Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244 VGMAT+IP HN+ E+ A L+ NP+ + L+E + GPDFPTGG+++ + I ++Y Sbjct: 183 VGMATNIPPHNLSEVISAIHVLMKNPDATTADLMEALPGPDFPTGGVVM-GKSGIRKAYE 241 Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304 G+G VRA+ +E G I+ TE+PY V K++LIE+IAEL KRI + DI DE Sbjct: 242 TGKGTIIVRAKVEIEGEAGGKQRIIATELPYMVNKAKLIERIAELARDKRIEGITDINDE 301 Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364 S + V+ R ++++ +++ L+ M+T F NM + G P+++ L IL + Sbjct: 302 SDREGMRVVIDVRRDASAEVILNNLYKLTLMQTSFSFNMLAIVKG-TPKILSLKEILNYY 360 Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRF 421 L H+ EV+ RR+ + + R IL+GL IA +IDEII IIR D K ++ F Sbjct: 361 LEHQVEVIQRRTKYELNKAQARAHILEGLRIALDHIDEIIKIIRGSQTGDVAKNQLIEGF 420 Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481 L + Q AIL++RL L LE +I E + L+ + E+ ++L S +++ N+I + E Sbjct: 421 GLDDKQAQAILDMRLVRLTGLEREKIDKEYNQLMKDIEEYKAILAS-RERVNEIIYQ--E 477 Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD-- 539 + EI +K D R EV + + +IE+E + + +++ G+I+ L + Sbjct: 478 LLEIQNKFGDPRRTELLVGEVL----SLEDEDLIEEEDVIISLTHNGYIKRLPTSEFKAQ 533 Query: 540 ------LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL---------------PAG 578 + + D ++ + T D +L + GK Y + P Sbjct: 534 NRGGRGVQGMGVHNDDFVEHLVSTSTHDVLLFFTDAGKVYRMKGYEIPEYGRSAKGIPVI 593 Query: 579 NLLSGRGHGEAIQLLIDL-NHNQDIVTAFVYDS---TCKLLVVSSKGNAFIVEESEIIAN 634 NLL+ G+ E IQ +I++ + N DI + + T K VS AN Sbjct: 594 NLLN-IGNNEKIQAVINVSDKNNDIEKDLFFVTLMGTVKRTPVSD------------FAN 640 Query: 635 TR-KGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSRG----KGVR 688 R G + + ++++ V+ + D ++G +R + F+ + M R +GVR Sbjct: 641 IRSNGLKAINLKDDDQVSNVLIASEDQNIIIGTHRGYAVSFNAADVRSMGRSATGVRGVR 700 Query: 689 LQ 690 L+ Sbjct: 701 LR 702 >gi|167469188|ref|ZP_02333892.1| DNA gyrase, A subunit [Yersinia pestis FV-1] Length = 862 Score = 397 bits (1020), Expect = e-108, Method: Compositional matrix adjust. Identities = 249/635 (39%), Positives = 368/635 (57%), Gaps = 65/635 (10%) Query: 41 RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVR 100 RA+PD+RDG KPV RR++ AM+ +G D+ +KKSAR+VG+VIGK HPHGD +VYD++VR Sbjct: 3 RALPDVRDGLKPVKRRVLFAMNVLGHDWNKPYKKSARVVGDVIGKYHPHGDSAVYDTIVR 62 Query: 101 LAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNE 160 +AQPF RY L+ GQGNFG++DGDSAAA RYTE RM+++A +L +++D VDF Y+ Sbjct: 63 MAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRMSKIAHELLADLEKDTVDFVPNYDG 122 Query: 161 EDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEY 220 + P V P++ PNLL NG+SGIAVGMAT+IP HN+ E+ + LA I++ ISIE L+EY Sbjct: 123 TEQIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHNLSEVIDGCLAYIEDENISIEGLMEY 182 Query: 221 IIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE-EVGRGSWCIVVTEIPYQVQK 279 I GPDFPT II R I E+YR GRG +RAR VE + G I+V EIPYQV K Sbjct: 183 IPGPDFPTAAII-NGRRGIEEAYRTGRGKVYIRARAEVEADAKTGRETIIVHEIPYQVNK 241 Query: 280 SRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKNRSLDPDLLMESIFMLSDMETR 338 +RLIEKIAEL+ KR+ + +RDES +D +RIV+ K ++ ++++ +++ L+ ++ Sbjct: 242 ARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEIKRDAVG-EVVLNNLYSLTQLQVT 300 Query: 339 FPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYL 398 F +NM LS G+ P+++ L IL ++ HRREV+ RR+ F ++ R IL+ L IA Sbjct: 301 FGINMVALSQGQ-PKLLNLKDILVAFVRHRREVVTRRTIFELRKARDRAHILEALAIALA 359 Query: 399 NIDEIIAIIR-----------------------------NEDKPKP--------VMVSRF 421 NID II +IR +D +P + ++ Sbjct: 360 NIDPIIELIRRASTPAEAKAGLIASPWELGNVASMLERAGDDAARPEWLEAEFGIRDGKY 419 Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481 LTE Q AIL+LRL+ L LE ++ E LL ++ +L + + I E+ Sbjct: 420 YLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLTLIGELIFILENPDRLMEVIREELVA 479 Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--------SL 533 +KE ++ DL RRT E++ + +I +E + V +S++G+++ + Sbjct: 480 IKEQYN---DL--RRT---EITANTSDINIEDLINQEDVVVTLSHQGYVKYQPLSDYEAQ 531 Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGRG-HGEAIQ 591 + SA KE D + L A+T D IL S+ G+ Y + L + RG G I Sbjct: 532 RRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQLPEASRGARGRPIV 591 Query: 592 LLIDLNHNQDIVTAFV----YDSTCKLLVVSSKGN 622 L+ L N+ I TA + Y+ C + + ++ G Sbjct: 592 NLLPLEPNERI-TAILPVREYEEGCHVFMATASGT 625 >gi|311232353|gb|ADP85207.1| DNA gyrase, A subunit [Desulfovibrio vulgaris RCH1] Length = 837 Score = 397 bits (1020), Expect = e-108, Method: Compositional matrix adjust. Identities = 265/767 (34%), Positives = 426/767 (55%), Gaps = 51/767 (6%) Query: 18 KAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSAR 77 + +S+ L + YL Y+LS I RAIPD+RDG KPVHRRI+ A E+G + KKSAR Sbjct: 5 QQISIEKELRKSYLEYSLSVIIGRAIPDVRDGLKPVHRRIMFAQHELGNAYNRPHKKSAR 64 Query: 78 IVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMT 137 IVG+VIGK HPHGD +VYD++VR+AQ F R PL+ GQGNFG+IDGD+AAA RYTE RM+ Sbjct: 65 IVGDVIGKYHPHGDSAVYDAIVRMAQEFSMRDPLVDGQGNFGSIDGDAAAAMRYTEVRMS 124 Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197 ++A + ++++ VDFR Y+ EPVV P++ PNLL NG++GIAVGMAT+IP HN+ Sbjct: 125 RLAGEFIADIEKETVDFRPNYDNTLLEPVVLPTRVPNLLLNGSTGIAVGMATNIPPHNLG 184 Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257 E+C A L L+D+ +I+ L++++ GPDFPTGG + + +V++Y GRG +VR + Sbjct: 185 ELCNALLHLLDDDACTIDDLMDHVKGPDFPTGGFVYAG-QGLVDAYTTGRGTVKVRGKVE 243 Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFPK 316 +EE +G IV+ EIPY + KS L+EKIA L+ +RI + D+RDES + +R+V+ K Sbjct: 244 IEERKKGFQAIVIREIPYGLNKSSLVEKIAALVNERRIDGVADLRDESDRKGIRVVIDLK 303 Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376 R PD+++ +++ + +E+ + +NM + R PQ++ L L +L HRRE++ RR+ Sbjct: 304 -RGTIPDIVVNALYKYTPLESSYGINMLAVVDNR-PQLLDLKSALSHFLEHRREIIIRRT 361 Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVDAILN 433 + ++ + R IL+GL IA NIDE++A+IR P K ++ RF L+E Q AIL+ Sbjct: 362 RYDLRKAEARAHILEGLRIALDNIDEVVALIRASATPQEAKDRLMQRFGLSEAQSQAILD 421 Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493 +RL+ L LE ++ E LL + E S+L + + + E E+++ ++ Sbjct: 422 MRLQRLTNLEHEKLLDEYRELLKKIEYFRSILENIEVLRQVMREEFTEIRDTYAT----- 476 Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSVD------LSALHF 545 +RRT A + +I + + + +S RG+I+ +L ++ ++ LH Sbjct: 477 KRRTEVLMDELEGIAI--EDLIPDDDVVITLSRRGYIKRTTLDNYQQQRRGGKGIAGLHT 534 Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL--LIDLNHNQDIV 603 + D ++ L +LL + GK + L + G + + + L+ L ++ + Sbjct: 535 SDDDFVQEFLTTTNHQYLLLFTNHGKMHQLKVHQVAEGSRTAKGVHIANLLPLEKDEWVT 594 Query: 604 TAFVYDSTCK---LLVVSSKGNAFIVEES--EIIANTRKGKTF-LKVSSEEKMKLVVKV- 656 T + L V+ +G +V+ S + A RKG + + ++++ +V ++ Sbjct: 595 TVLSVREFAEDRFFLFVTKRG---MVKRSSASLYARARKGGLIAVGLRDDDELIMVREIH 651 Query: 657 TGDHVAVVGENRKLLIFSIDQIPEMSRG----KGVRLQSYKDGGISDVICFKICEG---- 708 DHV + + F+ + M R KGV L G V+ + G Sbjct: 652 NDDHVVLTTGGGMAIRFACPDVRPMGRSATGVKGVALS-----GDDRVVACAVLPGDDTS 706 Query: 709 --LTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753 + I S G Y + L L RGG G + P++G + + Sbjct: 707 TEIMSISSNG--YGKRTRIELYRLQSRGGKGVKNFRVTPKTGDVIGA 751 >gi|160882761|ref|ZP_02063764.1| hypothetical protein BACOVA_00722 [Bacteroides ovatus ATCC 8483] gi|237720668|ref|ZP_04551149.1| DNA gyrase subunit A [Bacteroides sp. 2_2_4] gi|293369438|ref|ZP_06616022.1| DNA gyrase, A subunit [Bacteroides ovatus SD CMC 3f] gi|156111785|gb|EDO13530.1| hypothetical protein BACOVA_00722 [Bacteroides ovatus ATCC 8483] gi|229449503|gb|EEO55294.1| DNA gyrase subunit A [Bacteroides sp. 2_2_4] gi|292635478|gb|EFF53986.1| DNA gyrase, A subunit [Bacteroides ovatus SD CMC 3f] Length = 858 Score = 397 bits (1020), Expect = e-108, Method: Compositional matrix adjust. Identities = 261/777 (33%), Positives = 420/777 (54%), Gaps = 57/777 (7%) Query: 12 LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71 L ++ + +++ ++ Y+ Y++S I RA+PD+RDGFKPVHRRI++ M E+G Sbjct: 2 LEQDRIIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILYGMMELGNTSDKP 61 Query: 72 FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131 +KKSARIVGEV+GK HPHGD SVY ++VR+AQ + RYPL+ GQGNFG++DGDS AA RY Sbjct: 62 YKKSARIVGEVLGKYHPHGDSSVYFAMVRMAQEWAMRYPLVDGQGNFGSVDGDSPAAMRY 121 Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191 TEAR+ ++ E ++ + ++ VDF ++ EP V P++ PNLL NG SGIAVGMAT++ Sbjct: 122 TEARLNKLGEAMMDDLYKETVDFEPNFDNTLVEPKVMPTRIPNLLVNGASGIAVGMATNM 181 Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251 P HN+ E+ EA A IDNPEI++E+L+E++ PDFPTGG I + E+Y GRG Sbjct: 182 PPHNLSEVIEACDAYIDNPEITVEELMEFVKAPDFPTGGYIY-GVSGVREAYLTGRGRVI 240 Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VR 310 +RA+ +E G+ IV+TEIPY V K+ LI+ IA+L+ K+I + + DES D +R Sbjct: 241 MRAKAEIES-GQTHDKIVITEIPYNVNKAELIKYIADLVNDKKIEGISNANDESDRDGMR 299 Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370 IV+ K R + +++ ++ ++ ++T F +N L GR P+ + L ++K ++ HR E Sbjct: 300 IVIDIK-RDANASVVLNKLYKMTALQTSFGVNNVALVHGR-PKTLNLRDLIKYFIEHRHE 357 Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQ 427 V+ RR+ F ++ R IL+GL+IA NIDE+I IIR P ++ RF+LTE Q Sbjct: 358 VVIRRTQFDLRKAKERAHILEGLIIASDNIDEVIRIIRAAKTPNDAITGLIERFNLTEIQ 417 Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487 AI+ +RLR L L + Q+ +E + ++ + ++S+L + + E+ EVK + Sbjct: 418 ARAIVEMRLRQLTGLMQDQLHAEYEEIMKQIAYLESILADDEVCRRVMKEELLEVK---A 474 Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVD 539 K D+ R E+ + + + + + + IS+ G+I R+ V Sbjct: 475 KYGDVRR-----SEIVYSSEEFNPEDFYADDQMIITISHMGYIKRTPLTEFRAQNRGGVG 529 Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLN 597 ++ D ++ A + ++ + GK Y L + G G AIQ L++++ Sbjct: 530 SKGTETRDEDFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTKNSKGRAIQNLLNID 589 Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG---KTFLKVSSEEKMKLVV 654 + D VTA+ L V S ++ + ++ T+KG KT L+ S + V Sbjct: 590 SD-DNVTAY--------LRVKSLEDSEFINSHYVLFCTKKGVIKKTLLEQYSRPRQNGVN 640 Query: 655 KVT---------------GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGIS 698 +T + + + N + + F + M R GVR + + G Sbjct: 641 AITIREDDSVIEVRMTNGNNEIIIANRNGRAIRFHEAAVRVMGRTATGVRGITLDNDGQD 700 Query: 699 DV---ICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752 +V IC K E + + + + Y + RGG G ++GK ++ Sbjct: 701 EVVGMICIKDLETESVMVVSEQGYGKRSEIEDYRKTNRGGKGVKTMNITEKTGKLVT 757 >gi|220908183|ref|YP_002483494.1| DNA gyrase subunit A [Cyanothece sp. PCC 7425] gi|219864794|gb|ACL45133.1| DNA gyrase, A subunit [Cyanothece sp. PCC 7425] Length = 864 Score = 397 bits (1020), Expect = e-108, Method: Compositional matrix adjust. Identities = 250/707 (35%), Positives = 392/707 (55%), Gaps = 35/707 (4%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 +E + A LR + YL YA+S I RA+PD RDG KPVHRRI++AM E+GL F+ Sbjct: 9 QERIIATDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMHELGLTPDRPFR 68 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 K AR+VGEV+GK HPHGD +VYD+LVR+AQ F R PLI G GNFG+ID D AA RYTE Sbjct: 69 KCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRDPLIDGHGNFGSIDNDPPAAMRYTE 128 Query: 134 ARMTQV-AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192 +R+ + + +LQ ++++ VDF D ++ EP+V P++ P LL NG+SGIAVGMAT+IP Sbjct: 129 SRLRPLTCDALLQDIEQETVDFGDNFDGSQQEPLVMPARIPQLLLNGSSGIAVGMATNIP 188 Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252 HN+ E+ +ALI NPEIS E+L++YI GPDFPTG I+ + I E+Y GRG + Sbjct: 189 PHNLGELINGVIALIQNPEISSEQLMQYIPGPDFPTGAQILGT-TGIREAYTTGRGSITM 247 Query: 253 R--ARW-CVEEVGRGSW-CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308 R AR +E+ GR I++TE+PYQ K+ LIEKIAE++ KR+ + DIRDES D Sbjct: 248 RGVARIETIEQRGRPDREAIIITELPYQTNKAALIEKIAEMVNEKRLEGISDIRDESDRD 307 Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368 ++ R P +++ +++ + ++ F NM L G PQ++ L L E+L R Sbjct: 308 GMRIVIELKRDAYPRVVLNNLYKQTPLQINFGANMLALVNGE-PQLLTLKEFLHEFLKFR 366 Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTE 425 +V+ RR+ + + + R +L+GLLIA N+D +IA+IR + K ++ + L+E Sbjct: 367 IQVIERRTQYNKRKAEERDHLLQGLLIALSNLDSVIALIRHAADATTAKQELIDSYGLSE 426 Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485 Q DAIL ++LR L LE +I+ E ++L+A+ +L+ ++ + I E+ ++K Sbjct: 427 PQADAILQMQLRRLTALEAEKIQREHEDLVAQIADFQDILDRPERILSIIQTEVEQLKTR 486 Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA--- 542 F+ RRT ++ T +I + ++++ +G+I+ + + + + Sbjct: 487 FASP-----RRTVIEQLEGEIDTT---DLIANQKAVILVTEQGYIKRMPVDTFEAQSRDG 538 Query: 543 -----LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLID 595 KE D+++ D IL S G AY L A + G G I L+ Sbjct: 539 RGRKGAQIKEDDAVEHFFACCDHDGILFFSDRGVAYCLKAYQIPIGSRNARGVPIVQLLP 598 Query: 596 LNHNQDIVTAFVYDS--TCKLLVVSSKGNAFIVEESEIIANTR-KGKTFLKVSSEEKMKL 652 + + I + D + LV+ + G +N R G + + + ++++ Sbjct: 599 IPREEKITSVVPVDEFREDEYLVMLTAGGYIKKTALSAFSNIRANGLIAIALETGDQLRW 658 Query: 653 VVKVTGDHVAVVGENRKLLI-FSID--QIPEMSRG-KGVRLQSYKDG 695 V + ++G + + I F D Q+ + R +GVR + + G Sbjct: 659 VRRAREGDSIIIGSRQGMAIHFRTDHEQLRPLGRATRGVRAMALRAG 705 >gi|124485240|ref|YP_001029856.1| DNA gyrase subunit A [Methanocorpusculum labreanum Z] gi|124362781|gb|ABN06589.1| DNA gyrase subunit A [Methanocorpusculum labreanum Z] Length = 824 Score = 397 bits (1020), Expect = e-108, Method: Compositional matrix adjust. Identities = 253/708 (35%), Positives = 405/708 (57%), Gaps = 46/708 (6%) Query: 14 EENV--KAVSLRFALEER--YLAYALSTIKERAIPDLRDGFKPVHRRIIHAM-SEMGLDF 68 EEN K VS+ E + ++ YA+S I RAIPD+RDG KPVHRRI++AM + G Sbjct: 4 EENTTHKTVSINIEDEMKNCFIDYAMSVIIGRAIPDVRDGLKPVHRRILYAMFHDEGNTS 63 Query: 69 GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128 A+KKSA+ V +G HPHGD ++YD+LV++AQPF RY L+ GQGNFG+IDGDSAAA Sbjct: 64 DKAYKKSAKAVAATMGNYHPHGDSAIYDTLVKMAQPFSYRYTLVDGQGNFGSIDGDSAAA 123 Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188 RYTEAR+T+ AE +L+ +D++ VDF ++E EP V PS+ PNLL NGT+GIAVGMA Sbjct: 124 MRYTEARLTKAAESLLEDIDKETVDFVPNFDESSQEPDVLPSRIPNLLVNGTTGIAVGMA 183 Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248 T++ HN+ E+C+ A IDNPE+S+E++++ + PDFPTGG I+ + + IV +Y+ G+G Sbjct: 184 TNMMPHNLGEVCDLVDAYIDNPEMSLEEMMKILPAPDFPTGGKIMGT-DGIVNAYQTGQG 242 Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308 +R +EE +G IV+TEIPYQV K+ +IEKIA+L+ +K I + DIRDES +D Sbjct: 243 KVVLRGIAEIEERKKGFEQIVITEIPYQVNKAAMIEKIADLVKSKTIEGISDIRDESDKD 302 Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368 V+ ++ ++++ ++ + +E+ F + +N+ + + P+++ L +L+ ++AHR Sbjct: 303 GIRVIIELKQNTQANVVLNLLYKHTQLESSFGI-INLAIVDKKPKILSLAELLRHFIAHR 361 Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTE 425 +V+ RRS F ++ + R+ IL GLL A ID +IA IR + + +VS+ +E Sbjct: 362 VDVVRRRSLFDLRKAEERMHILSGLLKALDMIDVVIATIRASPEVSVAQEALVSKLGFSE 421 Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485 Q +AIL ++LR L LE+ +I E +L +K+ +L+S + + + E E++ Sbjct: 422 AQAEAILKMQLRRLAALEQQKILDETTSLQLVIDKLTWILSSEENILSVVKTETSEIRTA 481 Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHS 537 ++ RRT + D + +I E V+++ + +I R K Sbjct: 482 YAD-----ERRTQIDYTANTDFNVMD--LIPDEQTLVMLTTQNYIKRVPLDLYRQQKRGG 534 Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL-----PAGNLLSGRGHGEAIQL 592 + + K+ DS+ A+T D +L + G+ Y L P G+ S G+AI Sbjct: 535 RGVIGMTTKDEDSVDKVFLANTHDYLLCFTNKGRVYWLRVYEIPEGSRTS---KGKAIVN 591 Query: 593 LIDLNHNQDIVTAFV----YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKT--FLKVSS 646 L++L + V+A + +D+ LL + KG + ++ + R G + Sbjct: 592 LLNLTDEE--VSAVIPMRDFDAEKNLLYATKKGRVGKFSQ-DLFSRPRTGGIIGITLLDG 648 Query: 647 EEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGK----GVRLQ 690 +E + +VV V + + L FS D++ RG G+RL+ Sbjct: 649 DELVDVVVTDGSTDVVLTTAFGQALRFSEDEVRATGRGTQGVIGIRLK 696 >gi|77360364|ref|YP_339939.1| DNA gyrase, subunit A, type II topoisomerase [Pseudoalteromonas haloplanktis TAC125] gi|76875275|emb|CAI86496.1| DNA gyrase, subunit A, type II topoisomerase [Pseudoalteromonas haloplanktis TAC125] Length = 899 Score = 397 bits (1019), Expect = e-108, Method: Compositional matrix adjust. Identities = 246/636 (38%), Positives = 367/636 (57%), Gaps = 67/636 (10%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 V++ L+ YL YA+S I RA+PD+RDG KPVHRR++ AM+E+ D+ +KKSAR+V Sbjct: 11 VNIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELSNDWNKPYKKSARVV 70 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG++DGDSAAA RYTE RM ++ Sbjct: 71 GDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEVRMAKM 130 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 + +L ++++ VDF Y+ + P V P++ PNLL NG+SGIAVGMAT+IP HN+ E+ Sbjct: 131 SHELLADLEKETVDFVPNYDGTEQIPDVLPTRVPNLLVNGSSGIAVGMATNIPPHNLTEV 190 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 LALI NPE+SI +L++YI GPDFPT II ++ I ++Y GRG +RAR +E Sbjct: 191 VNGCLALIQNPELSILELMDYIPGPDFPTAAII-NGKKGIEQAYLTGRGKVYMRARAEIE 249 Query: 260 -EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKN 317 + I+V EIPYQV K+RLIEKIAEL+ K+I + +RDES +D +RIV+ K Sbjct: 250 VDEKTHRETIIVHEIPYQVNKARLIEKIAELVKDKKIEGISALRDESDKDGMRIVIEIKR 309 Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377 + ++++ +++ + ++T F +NM L + P+ L +L+E++ HRREV+ RR+ Sbjct: 310 GDVG-EVILNNLYAQTQLQTVFGMNMVAL-INNQPKCFNLKEMLEEFIIHRREVVTRRTV 367 Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS------------------ 419 F ++ R +L+GL IA NID II +IRN P V+ Sbjct: 368 FDLRKARDRAHMLEGLAIALANIDPIIELIRNSPTPAEAKVALTARSWELGNVKAMLDKA 427 Query: 420 --------------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKE 459 ++ ++E Q AIL+LRL L LE +I +E +LL Sbjct: 428 GEDNVARPDWLAAELGIRDGQYFISEQQAQAILDLRLHKLTGLEHEKILTEYQSLLDLIA 487 Query: 460 KIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEP 519 ++ +L + ++ I E+ E+K + RRT E++ A + +I +E Sbjct: 488 ELLHILATPERLMEVIRDELVEIKAQYGDE-----RRT---EINAAAHDISLEDLITEEN 539 Query: 520 ITVVISNRGWIR--SLKSHSVDL------SALHFKEGDSLKIALHAHTTDRILLLSTDG- 570 + V +S+ G+++ +L + SA K+ D ++ L A+T D IL ST G Sbjct: 540 VVVTLSHEGYVKYQALSDYEAQRRGGKGKSATKMKDEDFIERLLVANTHDTILCFSTAGR 599 Query: 571 ----KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602 K Y LP L S G+ I L+ L ++ I Sbjct: 600 LYWLKVYQLP---LASRAARGKPIVNLLPLEADERI 632 >gi|212693188|ref|ZP_03301316.1| hypothetical protein BACDOR_02698 [Bacteroides dorei DSM 17855] gi|237725403|ref|ZP_04555884.1| DNA gyrase A subunit [Bacteroides sp. D4] gi|212664293|gb|EEB24865.1| hypothetical protein BACDOR_02698 [Bacteroides dorei DSM 17855] gi|229436090|gb|EEO46167.1| DNA gyrase A subunit [Bacteroides dorei 5_1_36/D4] Length = 852 Score = 397 bits (1019), Expect = e-108, Method: Compositional matrix adjust. Identities = 253/769 (32%), Positives = 422/769 (54%), Gaps = 41/769 (5%) Query: 12 LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71 L ++ + +++ ++ Y+ Y++S I RA+PD+RDGFKPVHRRI++ M E+G A Sbjct: 2 LEQDRIIKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMIELGNTSDKA 61 Query: 72 FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131 +KKSARIVGEV+GK HPHGD SVY +LVR+AQ + RYPL+ GQGNFG++DGDS AA RY Sbjct: 62 YKKSARIVGEVLGKYHPHGDSSVYGALVRMAQDWAMRYPLVDGQGNFGSVDGDSPAAMRY 121 Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191 TEAR+ ++ E ++Q + ++ VDF++ +++ EP V P++ PNLL NG SGIAVGMAT++ Sbjct: 122 TEARLKKIGEEMMQDLYKETVDFQNNFDDTLQEPTVMPTRIPNLLVNGASGIAVGMATNM 181 Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251 P+HN+ E+ +A +A IDN +I IE L++Y+ PDFPTGG I + ++Y GRG Sbjct: 182 PTHNLSEVIDACIAYIDNNDIDIEGLMQYVKAPDFPTGGYIY-GISGVRDAYETGRGRVV 240 Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVR 310 +RA+ + E I+V EIPY V K LIE IA L+ K+I + + DES E +R Sbjct: 241 MRAKAEI-ETHTTHDKIIVNEIPYNVNKKELIENIASLVNDKKIDGISYVNDESDREGMR 299 Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370 IV+ K R + +++ +F ++ ++T F +N L GR P+++ L +++ ++ HR + Sbjct: 300 IVIDVK-RDANASVVLNKLFKMTALQTSFGVNNIALVHGR-PKMLNLKDLIRYFVEHRHD 357 Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQ 427 V+ RR+ + ++ R IL+GL+IA NIDE+I IIR P ++ RF+L+E Q Sbjct: 358 VVIRRTQYDLRKAQERAHILEGLIIASDNIDEVIRIIRAAKTPNDAIAGLIERFNLSEIQ 417 Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487 AI+ +RLR L L + Q+ +E + ++ + + +L++ + I E+ EVKE + Sbjct: 418 ARAIVEMRLRQLTGLMQDQLHAEYEEVMKQIAYYEEILSNDELCKKVIKDELIEVKEKYG 477 Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVD 539 + RR+ E+ + + + + + + IS+ G+I R+ V Sbjct: 478 DA-----RRS---EIVYSSEEFNPEDFYADDQMVITISHMGYIKRTPLSEFRAQNRGGVG 529 Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLN 597 ++ D ++ A + ++ + GK Y L + G G AIQ L++++ Sbjct: 530 SKGSETRDEDFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTKNAKGRAIQNLLNID 589 Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANT---------RKGKTFLKVSSEE 648 + D+VTA++ + ++ +I T + G + + ++ Sbjct: 590 SD-DVVTAYLRVKNLNDTEFINSHYVLFCTKNGVIKKTLLEQYSRPRQNGVNAITIREDD 648 Query: 649 KMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSY-KDGG--ISDVICF 703 K+ V GD+ + + N + + F + M R GVR + +DGG + +IC Sbjct: 649 KVIEVRMTNGDNEIIIANRNGRAIRFHESAVRVMGRTATGVRGMTLDEDGGDEVIGMICI 708 Query: 704 KICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752 K E + + + + Y + + RGG G ++GK ++ Sbjct: 709 KDPEAESIMVVSEQGYGKRSDIEDYRKTNRGGKGVKTLNITDKTGKLVA 757 >gi|222100459|ref|YP_002535027.1| DNA gyrase subunit A [Thermotoga neapolitana DSM 4359] gi|221572849|gb|ACM23661.1| DNA gyrase subunit A [Thermotoga neapolitana DSM 4359] Length = 803 Score = 397 bits (1019), Expect = e-108, Method: Compositional matrix adjust. Identities = 257/735 (34%), Positives = 409/735 (55%), Gaps = 38/735 (5%) Query: 26 LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85 L + YL Y++S I RAIPD+RDG KPV RRI++ M E+GL + KKSARIVGEV+GK Sbjct: 14 LVDSYLLYSMSVIVGRAIPDVRDGLKPVQRRILYGMYELGLTHNSPTKKSARIVGEVMGK 73 Query: 86 LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145 HPHGD VYD+LVR+AQPF RYPLI GQGNFG+ID D AA RYTEAR+T++AE +L+ Sbjct: 74 YHPHGDAPVYDALVRMAQPFTMRYPLIEGQGNFGSIDRDPPAAMRYTEARLTRLAEEMLE 133 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 +D++ V+ D ++ EP V PSK PNL+ NG SGIAVGMATSIP HN+ E +A + Sbjct: 134 DIDKNTVNMVDNFDGTLKEPEVLPSKVPNLIINGASGIAVGMATSIPPHNLSETVDALVY 193 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265 LID+PE S+E+L+++I GPDFPTGGI+V E + Y GRG VR + VEE G+ Sbjct: 194 LIDHPEASVEELMQFIKGPDFPTGGIVVNGSE-LKNVYEEGRGRIVVRGKVHVEE-GKRL 251 Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE-DVRIVL-FPKNRSLDPD 323 IV+TEIPY V K+ LIE+IA+L+ + +IRDES + +R+V+ PK+ + D Sbjct: 252 KRIVITEIPYGVSKAGLIEQIAKLVKDDDSLPVRNIRDESDKRGLRVVIEIPKD--TNED 309 Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383 +++ +++ + ++ F + M V+ + P++M L G+L+ +L HR EV+ RR+ + + Sbjct: 310 IIINNLYKRTALQDYFNVQMLVIDKNKRPRLMNLKGLLEAFLEHRFEVIRRRAEYEYEKF 369 Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAILNLRLRSLR 440 +R +++GLL A I ++ I+RN + + ++ ++E Q AIL++RL L Sbjct: 370 TKRAHVVEGLLKAARAIGVVVDIVRNSKDVESARNSLMETLEISEEQAKAILDMRLSRLT 429 Query: 441 KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500 LE +++E +L+ + ++ +L ++ + E +KE + RRT Sbjct: 430 SLEIENLQNEYSDLVKKISEVKEILEKDEKVREIMKKEFLYLKERYGDP-----RRT--- 481 Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DLSALHFKEGDSLK 552 E++ + + +I +E + + +S++G+++S +S ++ E D ++ Sbjct: 482 EITDEELRYDVEELIVEEDVVITLSHKGYLKSTPLNSYRSQRRGGKGITVSKLSEDDEVE 541 Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNL-LSGRG-HGEAIQLLIDLNHNQDIVTAFVYDS 610 + T L ++ GKAY L + +GR G+ I ++L + IV + Sbjct: 542 FVVVTKNTSSTLFITNFGKAYVLKNYQIETTGRNTRGKHISAFLNLEDTERIVALVPLNG 601 Query: 611 TCKLLVVSSKGNAF---IVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGEN 667 K LV+ +K +EE E + R + +E + V + VV Sbjct: 602 KGKDLVIVTKSGKIKRTSLEEFENATSNRGVRAIRIEPGDEIVSARVSTSEKETLVVATK 661 Query: 668 RKLLI-FSIDQIPEMSRG----KGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRS 722 ++I F + + M R + ++LQ + DV+ + E LT + + + + Sbjct: 662 LGMIIRFPVSDVRRMGRNAAGVQAIKLQPGDEVVSMDVVPSEEGEILTVTE---KGFGKR 718 Query: 723 ENDLLGWLGKRGGVG 737 L + KRGG G Sbjct: 719 TPVQLYRVQKRGGTG 733 >gi|299145617|ref|ZP_07038685.1| DNA gyrase, A subunit [Bacteroides sp. 3_1_23] gi|298516108|gb|EFI39989.1| DNA gyrase, A subunit [Bacteroides sp. 3_1_23] Length = 858 Score = 397 bits (1019), Expect = e-108, Method: Compositional matrix adjust. Identities = 261/777 (33%), Positives = 420/777 (54%), Gaps = 57/777 (7%) Query: 12 LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71 L ++ + +++ ++ Y+ Y++S I RA+PD+RDGFKPVHRRI++ M E+G Sbjct: 2 LEQDRIIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILYGMMELGNTSDKP 61 Query: 72 FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131 +KKSARIVGEV+GK HPHGD SVY ++VR+AQ + RYPL+ GQGNFG++DGDS AA RY Sbjct: 62 YKKSARIVGEVLGKYHPHGDSSVYFAMVRMAQEWAMRYPLVDGQGNFGSVDGDSPAAMRY 121 Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191 TEAR+ ++ E ++ + ++ VDF ++ EP V P++ PNLL NG SGIAVGMAT++ Sbjct: 122 TEARLNKLGEAMMDDLYKETVDFEPNFDNTLVEPKVMPTRIPNLLVNGASGIAVGMATNM 181 Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251 P HN+ E+ EA A IDNPEI++E+L+E++ PDFPTGG I + E+Y GRG Sbjct: 182 PPHNLSEVIEACDAYIDNPEITVEELMEFVKAPDFPTGGYIY-GVSGVREAYLTGRGRVI 240 Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VR 310 +RA+ +E G+ IV+TEIPY V K+ LI+ IA+L+ K+I + + DES D +R Sbjct: 241 MRAKAEIES-GQTHDKIVITEIPYNVNKAELIKYIADLVNDKKIEGISNANDESDRDGMR 299 Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370 IV+ K R + +++ ++ ++ ++T F +N L GR P+ + L ++K ++ HR E Sbjct: 300 IVIDIK-RDANASVVLNKLYKMTALQTSFGVNNVALVHGR-PKTLNLRDLIKYFIEHRHE 357 Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQ 427 V+ RR+ F ++ R IL+GL+IA NIDE+I IIR P ++ RF+LTE Q Sbjct: 358 VVIRRTQFDLRKAKERAHILEGLIIASDNIDEVIRIIRAAKTPNDAITGLIERFNLTEIQ 417 Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487 AI+ +RLR L L + Q+ +E + ++ + ++S+L + + E+ EVK + Sbjct: 418 ARAIVEMRLRQLTGLMQDQLHAEYEEIMKQIAYLESILADDEVCRRVMKEELLEVK---A 474 Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVD 539 K D+ R E+ + + + + + + IS+ G+I R+ V Sbjct: 475 KYGDVRR-----SEIVYSSEEFNPEDFYADDQMIITISHMGYIKRTPLTEFRAQNRGGVG 529 Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLN 597 ++ D ++ A + ++ + GK Y L + G G AIQ L++++ Sbjct: 530 SKGTETRDEDFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTKNSKGRAIQNLLNID 589 Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG---KTFLKVSSEEKMKLVV 654 + D VTA+ L V S ++ + ++ T+KG KT L+ S + V Sbjct: 590 SD-DNVTAY--------LRVKSLEDSEFINSHYVLFCTKKGVIKKTLLEQYSRPRQNGVN 640 Query: 655 KVT---------------GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGIS 698 +T + + + N + + F + M R GVR + + G Sbjct: 641 AITIREDDSVIEVRMTNGNNEIIIANRNGRAIRFHEAAVRVMGRTATGVRGITLDNDGQD 700 Query: 699 DV---ICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752 +V IC K E + + + + Y + RGG G ++GK ++ Sbjct: 701 EVVGMICIKDLETESVMVVSEQGYGKRSEIEDYRKTNRGGKGVKTMNITEKTGKLVT 757 >gi|224370718|ref|YP_002604882.1| GyrA [Desulfobacterium autotrophicum HRM2] gi|223693435|gb|ACN16718.1| GyrA [Desulfobacterium autotrophicum HRM2] Length = 870 Score = 397 bits (1019), Expect = e-108, Method: Compositional matrix adjust. Identities = 273/765 (35%), Positives = 425/765 (55%), Gaps = 44/765 (5%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 EE +S+ +++ YL YA+S I RA+PD+RDG KPVHRR++ AM E+ D+ +K Sbjct: 5 EEITNTISIETEMKKSYLEYAMSVIIGRALPDVRDGLKPVHRRVLFAMRELRNDWNKPYK 64 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSARIVG+VIGK HPHGD +VYD++VR+AQ F RY L+ GQGNFG++DGDS AA RYTE Sbjct: 65 KSARIVGDVIGKYHPHGDTAVYDTMVRMAQDFSLRYTLVDGQGNFGSVDGDSPAAMRYTE 124 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 RM ++A +L ++++ VDF Y+E +EP V P+KFP LL NG+SGIAVGM T+IP Sbjct: 125 VRMKKIAHQMLADLEKETVDFIPNYDETMAEPSVLPTKFPALLVNGSSGIAVGMTTNIPP 184 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E+ + +AL++ P+I+IE+L+ +I GPDFPT G I R+ I E+Y GRG VR Sbjct: 185 HNIGEVVQGLIALLEKPDITIEELMIHIPGPDFPTYGKIY-GRKGIHEAYTTGRGIITVR 243 Query: 254 ARWCVEEVGRG-SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRI 311 A+ VE + + IVVTE+PYQV K++L+EKIAEL+ AK I +RDES + +RI Sbjct: 244 AKVEVEVNSKTKAETIVVTELPYQVNKAKLVEKIAELMRAKVIEGASYVRDESDRQGMRI 303 Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371 + K R PD+++ ++ ++M T F + + R P++ L +L+++L HRR V Sbjct: 304 AIGLK-RDQFPDVVINQLYKHTNMHTSFGIIFLAVVNNR-PELFTLKELLEQFLNHRRSV 361 Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQV 428 + RR+ F + R IL+GL+ A N+D ++A+IR P K +V F LT+ Q Sbjct: 362 IIRRTLFDQKKAMDRAHILEGLIKALDNLDAVVALIRASQSPEEAKAGLVQSFELTQIQA 421 Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488 AIL +RL+ L LE +I E LL + +L+S + + I E+ E+K+ + Sbjct: 422 QAILEMRLQRLTGLERDKINEEYAQLLKDLAWYQEILSSDQVVRDIIKQELTELKDEYQD 481 Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--------SLKSHSVDL 540 RRT E A + +I +E + V ++ G+I+ S Sbjct: 482 D-----RRTQIVE---ATGEINIEDLIAEEDMVVTVTRSGYIKRNPITLYASQHRGGKGK 533 Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL-LSGRGH-GEAIQLLIDLNH 598 +A+ K+ D ++ A T L ++ GK Y L ++GR G+AI L++ Sbjct: 534 TAMGTKDEDFVEHLFVASTHHTFLFITNLGKVYQSKVYELPMAGRTSLGKAIVNLLNFEQ 593 Query: 599 NQDIVTA-----FVYDSTCKLLVVSSKGNAFIVEESEIIANTRK---GKTFLKVSSEEKM 650 + + T FV D + +V+++K V++++++A +R G +K++ ++++ Sbjct: 594 GEKLATVLTVPEFVED---RYVVMATKLGR--VKKTDLMAYSRPRSGGLIGIKLADDDEL 648 Query: 651 KLVVKVTGDHVAVVG-ENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKIC-E 707 G +G E K++ F + + +RG GVR G S V+ ++ Sbjct: 649 IAAGITDGKTDIFLGSEGGKVIRFDENDVRTTARGSMGVRGMRIDPG--SCVVGMEVLNH 706 Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752 G T + Y + RGG G + R+GK ++ Sbjct: 707 GQTLLTVTENGYGKRTLIQEYRSQTRGGKGVFSIRTSERNGKMVA 751 >gi|46578421|ref|YP_009229.1| DNA gyrase subunit A [Desulfovibrio vulgaris str. Hildenborough] gi|120601055|ref|YP_965455.1| DNA gyrase, A subunit [Desulfovibrio vulgaris DP4] gi|46447832|gb|AAS94488.1| DNA gyrase, A subunit [Desulfovibrio vulgaris str. Hildenborough] gi|120561284|gb|ABM27028.1| DNA gyrase subunit A [Desulfovibrio vulgaris DP4] Length = 856 Score = 397 bits (1019), Expect = e-108, Method: Compositional matrix adjust. Identities = 267/778 (34%), Positives = 429/778 (55%), Gaps = 51/778 (6%) Query: 7 SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66 SN+ + +S+ L + YL Y+LS I RAIPD+RDG KPVHRRI+ A E+G Sbjct: 13 SNTTRQAVSEQQQISIEKELRKSYLEYSLSVIIGRAIPDVRDGLKPVHRRIMFAQHELGN 72 Query: 67 DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126 + KKSARIVG+VIGK HPHGD +VYD++VR+AQ F R PL+ GQGNFG+IDGD+A Sbjct: 73 AYNRPHKKSARIVGDVIGKYHPHGDSAVYDAIVRMAQEFSMRDPLVDGQGNFGSIDGDAA 132 Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186 AA RYTE RM+++A + ++++ VDFR Y+ EPVV P++ PNLL NG++GIAVG Sbjct: 133 AAMRYTEVRMSRLAGEFIADIEKETVDFRPNYDNTLLEPVVLPTRVPNLLLNGSTGIAVG 192 Query: 187 MATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLG 246 MAT+IP HN+ E+C A L L+D+ +I+ L++++ GPDFPTGG + + +V++Y G Sbjct: 193 MATNIPPHNLGELCNALLHLLDDDACTIDDLMDHVKGPDFPTGGFVYAG-QGLVDAYTTG 251 Query: 247 RGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES- 305 RG +VR + +EE +G IV+ EIPY + KS L+EKIA L+ +RI + D+RDES Sbjct: 252 RGTVKVRGKVEIEERKKGFQAIVIREIPYGLNKSSLVEKIAALVNERRIDGVADLRDESD 311 Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365 + +R+V+ K R PD+++ +++ + +E+ + +NM + R PQ++ L L +L Sbjct: 312 RKGIRVVIDLK-RGTIPDIVVNALYKYTPLESSYGINMLAVVDNR-PQLLDLKSALSHFL 369 Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFS 422 HRRE++ RR+ + ++ + R IL+GL IA NIDE++A+IR P K ++ RF Sbjct: 370 EHRREIIIRRTRYDLRKAEARAHILEGLRIALDNIDEVVALIRASATPQEAKDRLMQRFG 429 Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482 L+E Q AIL++RL+ L LE ++ E LL + E S+L + + + E E+ Sbjct: 430 LSEAQSQAILDMRLQRLTNLEHEKLLDEYRELLKKIEYFRSILENIEVLRQVMREEFTEI 489 Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSVD- 539 ++ ++ +RRT A + +I + + + +S RG+I+ +L ++ Sbjct: 490 RDTYAT-----KRRTEVLMDELEGIAI--EDLIPDDDVVITLSRRGYIKRTTLDNYQQQR 542 Query: 540 -----LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL-- 592 ++ LH + D ++ L +LL + GK + L + G + + + Sbjct: 543 RGGKGIAGLHTSDDDFVQEFLTTTNHQYLLLFTNHGKMHQLKVHQVAEGSRTAKGVHIAN 602 Query: 593 LIDLNHNQDIVTAFVYDSTCK---LLVVSSKGNAFIVEES--EIIANTRKGKTF-LKVSS 646 L+ L ++ + T + L V+ +G +V+ S + A RKG + + Sbjct: 603 LLPLEKDEWVTTVLSVREFAEDRFFLFVTKRG---MVKRSSASLYARARKGGLIAVGLRD 659 Query: 647 EEKMKLVVKV-TGDHVAVVGENRKLLIFSIDQIPEMSRG----KGVRLQSYKDGGISDVI 701 ++++ +V ++ DHV + + F+ + M R KGV L G V+ Sbjct: 660 DDELIMVREIHNDDHVVLTTGGGMAIRFACPDVRPMGRSATGVKGVALS-----GDDRVV 714 Query: 702 CFKICEG------LTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753 + G + I S G Y + L L RGG G + P++G + + Sbjct: 715 ACAVLPGDDTSTEIMSISSNG--YGKRTRIELYRLQSRGGKGVKNFRVTPKTGDVIGA 770 >gi|51891145|ref|YP_073836.1| DNA gyrase A subunit [Symbiobacterium thermophilum IAM 14863] gi|51854834|dbj|BAD38992.1| DNA gyrase A subunit [Symbiobacterium thermophilum IAM 14863] Length = 813 Score = 397 bits (1019), Expect = e-108, Method: Compositional matrix adjust. Identities = 229/588 (38%), Positives = 343/588 (58%), Gaps = 23/588 (3%) Query: 22 LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81 ++ +E YL Y++S I RA+PD+RDG KPV RRI++AM E G F+KSA+ VG+ Sbjct: 14 IKHEMETSYLTYSMSVIVGRALPDVRDGLKPVQRRILYAMYESGNTADKPFRKSAKTVGD 73 Query: 82 VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE 141 V+ K HPHGD +VYD++VR+AQ FV RYPL+ GQGNFG+IDGD AA RYTEAR++++A Sbjct: 74 VLSKYHPHGDAAVYDTMVRMAQDFVLRYPLVEGQGNFGSIDGDPPAAMRYTEARLSRLAH 133 Query: 142 LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICE 201 +L ++++ VDF D Y+ + EP V PS+FPNLL NG++GIAVGMAT+IP HN+ E+ + Sbjct: 134 EMLADIEKNTVDFEDNYDNSEKEPTVLPSRFPNLLVNGSTGIAVGMATNIPPHNLGEVID 193 Query: 202 AALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEV 261 + LID P+ISIE+L I GPDFPTG +I+ E I +Y+ G+G +RAR +E + Sbjct: 194 GIIRLIDQPDISIEELNRIIKGPDFPTGALIL-GHEGIRRAYQTGKGSITLRARTQIETL 252 Query: 262 GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLD 321 G IVVTE+PY V K++LIE+IAEL ++I + D+RDES + R + Sbjct: 253 QNGRNRIVVTELPYGVNKAKLIERIAELHRDRKIDGITDLRDESDRSGLRIAIELRRDAN 312 Query: 322 PDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQ 381 P +++ +F + ++ F + M L R P+++ L +L +L H+ EV+ RR+ F +Q Sbjct: 313 PHVILNQLFKYTALQQNFGIIMLALVENR-PRLLNLKQMLHYYLQHQLEVIVRRTQFDLQ 371 Query: 382 AIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAILNLRLRS 438 R IL+GLL A IDE+I IR+ D+ + ++S F TE Q IL+++LR Sbjct: 372 KALDRAHILEGLLKALDIIDEVINTIRSSPTTDEARSRLMSNFGFTEVQAQHILDMQLRR 431 Query: 439 LRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTT 498 L LE +++ E D L ++L S K Q++ I E+ E+K+ + RRT Sbjct: 432 LTALEREKLQEEYDELQDRIAYYRAVLASEKMQYDIIKQELGEIKKKYGDP-----RRT- 485 Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDS 550 ++ D + +I E + V IS+ G+I R + + KE D Sbjct: 486 --RITPDDGDIDIEDLIADEDVVVTISHSGYIKRVPLSTYRQQRRGGRGVQGAGTKEEDF 543 Query: 551 LKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDL 596 ++ T ++ + G+ Y + + S + G AI LI L Sbjct: 544 IEHIFTTTTHHDMMFFTDQGRVYRIRCHEIPEASRQARGTAIVNLIPL 591 >gi|237716513|ref|ZP_04546994.1| subunit A [Bacteroides sp. D1] gi|262408111|ref|ZP_06084659.1| DNA gyrase, A subunit [Bacteroides sp. 2_1_22] gi|294645224|ref|ZP_06722942.1| DNA gyrase, A subunit [Bacteroides ovatus SD CC 2a] gi|294806091|ref|ZP_06764945.1| DNA gyrase, A subunit [Bacteroides xylanisolvens SD CC 1b] gi|298484187|ref|ZP_07002353.1| DNA gyrase, A subunit [Bacteroides sp. D22] gi|229444160|gb|EEO49951.1| subunit A [Bacteroides sp. D1] gi|262354919|gb|EEZ04011.1| DNA gyrase, A subunit [Bacteroides sp. 2_1_22] gi|292639435|gb|EFF57735.1| DNA gyrase, A subunit [Bacteroides ovatus SD CC 2a] gi|294446708|gb|EFG15321.1| DNA gyrase, A subunit [Bacteroides xylanisolvens SD CC 1b] gi|298269691|gb|EFI11286.1| DNA gyrase, A subunit [Bacteroides sp. D22] Length = 858 Score = 397 bits (1019), Expect = e-108, Method: Compositional matrix adjust. Identities = 261/777 (33%), Positives = 419/777 (53%), Gaps = 57/777 (7%) Query: 12 LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71 L ++ + +++ ++ Y+ Y++S I RA+PD+RDGFKPVHRRI++ M E+G Sbjct: 2 LEQDRIIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILYGMMELGNTSDKP 61 Query: 72 FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131 +KKSARIVGEV+GK HPHGD SVY ++VR+AQ + RYPL+ GQGNFG++DGDS AA RY Sbjct: 62 YKKSARIVGEVLGKYHPHGDSSVYFAMVRMAQEWAMRYPLVDGQGNFGSVDGDSPAAMRY 121 Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191 TEAR+ ++ E ++ + ++ VDF ++ EP V P++ PNLL NG SGIAVGMAT++ Sbjct: 122 TEARLNKLGEAMMDDLYKETVDFEPNFDNTLVEPKVMPTRIPNLLVNGASGIAVGMATNM 181 Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251 P HN+ E+ EA A IDNPEI++E+L+E++ PDFPTGG I + E+Y GRG Sbjct: 182 PPHNLSEVIEACEAYIDNPEITVEELMEFVKAPDFPTGGFIY-GVSGVREAYLTGRGRVI 240 Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VR 310 +RA+ +E G+ IV+TEIPY V K+ LI+ IA+L+ K+I + + DES D +R Sbjct: 241 MRAKAEIES-GQTHDKIVITEIPYNVNKAELIKYIADLVNDKKIEGISNANDESDRDGMR 299 Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370 IV+ K R + +++ ++ ++ ++T F +N L GR P+ + L ++K ++ HR E Sbjct: 300 IVIDIK-RDANASVVLNKLYKMTALQTSFGVNNVALVHGR-PKTLNLRDLIKYFIEHRHE 357 Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQ 427 V+ RR+ F ++ R IL+GL+IA NIDE+I IIR P ++ RF+LTE Q Sbjct: 358 VVIRRTQFDLRKAKERAHILEGLIIASDNIDEVIRIIRAAKTPNDAIAGLIERFNLTEIQ 417 Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487 AI+ +RLR L L + Q+ +E + ++ + ++S+L + + E+ EVK Sbjct: 418 SRAIVEMRLRQLTGLMQDQLHAEYEEIMKQIAYLESILADDEVCRQVMKDELLEVK---- 473 Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVD 539 T G R + E+ + + + + + + IS+ G+I R+ V Sbjct: 474 --TKYGDERRS--EIVYSSEEFNPEDFYADDQMIITISHMGYIKRTPLTEFRAQNRGGVG 529 Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLN 597 ++ D ++ A + ++ + GK Y L + G G AIQ L++++ Sbjct: 530 SKGTETRDEDFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTKNSKGRAIQNLLNID 589 Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG---KTFLKVSSEEKMKLVV 654 + D VTA+ L V S ++ + ++ T+KG KT L+ S + V Sbjct: 590 SD-DNVTAY--------LRVKSLEDSEFINSHYVLFCTKKGVIKKTLLEQYSRPRQNGVN 640 Query: 655 KVT---------------GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGIS 698 +T + + + N + + F + M R GVR + + G Sbjct: 641 AITIREDDSVIEVRMTNGNNEIIIANRNGRAIRFHEAAVRVMGRTATGVRGITLDNDGQD 700 Query: 699 DV---ICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752 +V IC K E + + + + Y + RGG G ++GK ++ Sbjct: 701 EVVGMICIKDLETESVMVVSEQGYGKRSEIEDYRKTNRGGKGVKTMNITEKTGKLVT 757 >gi|293604169|ref|ZP_06686577.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Achromobacter piechaudii ATCC 43553] gi|292817394|gb|EFF76467.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Achromobacter piechaudii ATCC 43553] Length = 891 Score = 397 bits (1019), Expect = e-108, Method: Compositional matrix adjust. Identities = 233/610 (38%), Positives = 347/610 (56%), Gaps = 61/610 (10%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 VSL + YL YA+S I RA+PD+RDG KPVHRR+++AM E+ D+ A+KKSARIV Sbjct: 11 VSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNRAYKKSARIV 70 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGDQSVYD++VR+AQ F RY L+ GQGNFG+IDGD+AAA RYTE R+ ++ Sbjct: 71 GDVIGKYHPHGDQSVYDTIVRMAQDFSMRYMLVDGQGNFGSIDGDNAAAMRYTEIRLAKI 130 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A +L +D++ VDF Y+ + EP++ PS+ PNLL NG+SGIAVGMAT+IP HN+QE+ Sbjct: 131 AHELLADIDQETVDFGPNYDGSEQEPLLLPSRLPNLLVNGSSGIAVGMATNIPPHNLQEV 190 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 + L + NP ++++L+E I PDFPTGGII + E YR GRG +RA+ E Sbjct: 191 VDGCLYCLRNPACTVDELIEIIPAPDFPTGGIIY-GMSGVREGYRTGRGRVIMRAKTHFE 249 Query: 260 EVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318 ++ +G+ IV+ IPYQV K L E+IAEL+ K+I + DIRDES +D ++ R Sbjct: 250 DMEKGNRQAIVIDAIPYQVNKKTLQERIAELVNDKKIEGISDIRDESDKDGMRLVIELKR 309 Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378 P++++ +++ + ++ F +N+ L G+ P+++ L ++ +L HRREV+ RR+ F Sbjct: 310 GEVPEVVLNNLYKNTQLQDTFGMNLVALVDGQ-PRLLNLKQMIDYFLQHRREVVTRRTVF 368 Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV-----------------MVSR- 420 +++ R +L+GL +A NID+ IAII+ P PV M+SR Sbjct: 369 QLRKARERGHVLEGLAVALANIDDFIAIIKAAPTP-PVARQELMAKSWDSSLVRDMLSRA 427 Query: 421 ---------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453 + L++ Q ILN+RL+ L LE+ +I E + Sbjct: 428 DGDTPGGRAAFRPDDLGTEFGLQGDGMYRLSDTQAQEILNMRLQRLTGLEQDKIVGEYKD 487 Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513 +++ + +L ++ I+ E++ +K FS +T RR + D L Sbjct: 488 IMSTIADLLDILARPERITTIISDELQAIKAEFSTNTKDSRRSEIELNATELDTEDL--- 544 Query: 514 MIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565 I + V +S+ G+I RS K A KE D + A+T D +L Sbjct: 545 -ITPTDMVVTLSHGGYIKSQPLSEYRSQKRGGRGKQATAMKENDWIDQLFIANTHDYLLC 603 Query: 566 LSTDGKAYTL 575 S G+ Y L Sbjct: 604 FSNRGRVYWL 613 >gi|153854250|ref|ZP_01995549.1| hypothetical protein DORLON_01543 [Dorea longicatena DSM 13814] gi|149753025|gb|EDM62956.1| hypothetical protein DORLON_01543 [Dorea longicatena DSM 13814] Length = 837 Score = 397 bits (1019), Expect = e-108, Method: Compositional matrix adjust. Identities = 241/675 (35%), Positives = 386/675 (57%), Gaps = 47/675 (6%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 + V V L+ +E Y+ YA+S I RA+PD+RDG KPV RRI+++M E+ +K Sbjct: 7 DKVHEVDLKQTMETSYIDYAMSVIASRALPDVRDGLKPVQRRIMYSMIELNNGPDKPHRK 66 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 ARIVG+ +GK HPHGD S+Y +LV +AQ + RYPL+ G GNFG++DGD AAA RYTEA Sbjct: 67 CARIVGDTMGKYHPHGDSSIYGALVNMAQEWSTRYPLVDGHGNFGSVDGDGAAAMRYTEA 126 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 R+++++ + ++++ VDF ++E + EP V PS+FPNLL NGTSGIAVGMAT+IP H Sbjct: 127 RLSKISMELTADINKNTVDFIPNFDETEKEPTVLPSRFPNLLVNGTSGIAVGMATNIPPH 186 Query: 195 NVQEICEAALALIDN-----PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249 N++E+ A + +ID+ E +IE++L+ I GPDFPTGG+I+ +R I E+YR GRG Sbjct: 187 NLREVINAVVQIIDDQIEDKEETTIEEILKIIKGPDFPTGGMILGTR-GIEEAYRTGRGK 245 Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309 RVRA +E + G I+V+E+PY V K+RLIEKIAEL+ K+I + D+ D+S+ + Sbjct: 246 IRVRAVTDIETMPNGKSRIIVSELPYMVNKARLIEKIAELVRDKKIDGITDLSDQSSREG 305 Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369 V+ R + ++++ ++ + ++ F + M L +G P+VM L +L +L H+ Sbjct: 306 MRVVIELRRDANANVILNQLYKHTQLQDTFGVIMLAL-VGNEPKVMNLMEMLNYYLKHQE 364 Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTEN 426 EV+ RR+ + + + R ILKGLLIA NIDE+I IIR K ++ RF LT+ Sbjct: 365 EVVTRRTQYELNKAEERAHILKGLLIALDNIDEVIKIIRGSQTVQIAKSELMERFGLTDV 424 Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486 Q AI+++RLR+L LE ++++E L+ + E + ++L K I EI +++ + Sbjct: 425 QSQAIVDMRLRALTGLEREKLEAEYKALMEQIEHLRAILADRKLLLGVIKEEILVIRDKY 484 Query: 487 SKSTDLGRRRTTF----CEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---- 538 RRT+ ++S D +I +E + + ++ G+I+ + SH Sbjct: 485 GDE-----RRTSIGFDEFDISMED-------LIPREDVVITMTKLGYIKRM-SHDTFKAQ 531 Query: 539 -----DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQ 591 + + + D ++ +T ++ + G+ Y + A + S G AI Sbjct: 532 NRGGKGIKGMQKLDEDYVEELFMTNTHHYLMFFTNTGRVYRMKAYEIPEASRTSRGTAIV 591 Query: 592 LLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEI--IANTRK-GKTFLKVS 645 L+ L + I Y+ LL+ + KG +++++ I AN RK G + + Sbjct: 592 NLLQLMPGEKISAVIPIEKYNDDEYLLMATKKG---LIKKTPIKEYANVRKTGLAAITLR 648 Query: 646 SEEKMKLVVKVTGDH 660 E+++ V DH Sbjct: 649 EEDELIEVKYTDSDH 663 >gi|33574094|emb|CAE38419.1| DNA gyrase subunit A [Bordetella parapertussis] gi|33576885|emb|CAE33965.1| DNA gyrase subunit A [Bordetella bronchiseptica RB50] Length = 877 Score = 397 bits (1019), Expect = e-108, Method: Compositional matrix adjust. Identities = 234/600 (39%), Positives = 344/600 (57%), Gaps = 61/600 (10%) Query: 30 YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89 YL YA+S I RA+PD+RDG KPVHRR+++AM E+ D+ A+KKSARIVG+VIGK HPH Sbjct: 5 YLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNRAYKKSARIVGDVIGKYHPH 64 Query: 90 GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDE 149 GDQSVYD++VR+AQ F RY L+ GQGNFG+IDGD+AAA RYTE R+ ++A +L +D+ Sbjct: 65 GDQSVYDTIVRMAQDFSMRYMLVDGQGNFGSIDGDNAAAMRYTEIRLAKIAHELLADIDQ 124 Query: 150 DAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDN 209 + VDF Y+ + EP++ PS+ PNLL NG+SGIAVGMAT+IP HN+QE+ + L + N Sbjct: 125 ETVDFGPNYDGSEQEPLLLPSRLPNLLVNGSSGIAVGMATNIPPHNLQEVVDGCLYCLRN 184 Query: 210 PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS-WCI 268 PE SI++L+E I PDFPTGG+I + E YR GRG +RA+ E++ +G+ I Sbjct: 185 PECSIDELIELIPAPDFPTGGVIY-GITGVREGYRTGRGRVIMRAKTHFEDMEKGNRQAI 243 Query: 269 VVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMES 328 VV IPYQV K L E+IAEL+ K+I + DIRDES +D ++ R P++++ + Sbjct: 244 VVDAIPYQVNKKTLQERIAELVNDKKIEGISDIRDESDKDGMRLVIELKRGEVPEVVLNN 303 Query: 329 IFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVE 388 ++ + ++ F +N+ L G+ P+++ L +++ +L HRREV+ RR+ F+++ R Sbjct: 304 LYKNTQLQDTFGMNLVALVDGQ-PRLLNLKQLIEYFLQHRREVVTRRTVFQLRKARERGH 362 Query: 389 ILKGLLIAYLNIDEIIAIIRNEDKPKPV-----------------MVSR----------- 420 +L+GL +A NID+ IAII+ P PV M++R Sbjct: 363 VLEGLAVALANIDDFIAIIKAAPTP-PVARQELMARSWDSSLVREMLARVDGDAAGGVAA 421 Query: 421 -----------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDS 463 + L+E Q ILN+RL+ L LE+ +I E +++A + Sbjct: 422 FRPDDLAPEYGLQGDGNYRLSETQAQEILNMRLQRLTGLEQDKIIGEYKDVMATIADLLD 481 Query: 464 LLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVV 523 +L ++ I+ E++ +K FS S RR + D L M + V Sbjct: 482 ILARPERITTIISEELQAIKAEFSTSAKDTRRAEIEVNATELDTEDLITPM----DMVVT 537 Query: 524 ISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575 +S+ G+I RS K A KE D + A+T D +L S G+ Y L Sbjct: 538 LSHGGYIKSQPLSEYRSQKRGGRGKQATAMKENDWVDQLFIANTHDYLLCFSNRGRVYWL 597 >gi|226326151|ref|ZP_03801669.1| hypothetical protein COPCOM_03970 [Coprococcus comes ATCC 27758] gi|225205693|gb|EEG88047.1| hypothetical protein COPCOM_03970 [Coprococcus comes ATCC 27758] Length = 844 Score = 396 bits (1018), Expect = e-108, Method: Compositional matrix adjust. Identities = 243/674 (36%), Positives = 385/674 (57%), Gaps = 38/674 (5%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 + V V ++ +EE Y+ YA+S I RA+PD+RDG KPV RRI+++M E+ +K Sbjct: 7 DKVHEVDMKKTMEEFYIDYAMSVIASRALPDVRDGLKPVQRRILYSMIELNNGPDKPHRK 66 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 ARIVG+ +GK HPHGD S+Y +LV +AQ + RY L+ G GNFG++DGD AAA RYTEA Sbjct: 67 CARIVGDTMGKYHPHGDSSIYGALVNMAQDWSTRYILVDGHGNFGSVDGDGAAAMRYTEA 126 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 R+++++ + +++D VDF ++E + EP V PS+FPNLL NGTSGIAVGMAT+IP H Sbjct: 127 RLSKISMEMTADINKDTVDFAPNFDETEKEPTVLPSRFPNLLVNGTSGIAVGMATNIPPH 186 Query: 195 NVQEICEAALALIDNP-----EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249 N++E+ A + +ID+ E +IE+++E I GPDFPTG I+ +R I E+YR GRG Sbjct: 187 NLREVIGAVVKIIDDQIEDKDETTIEEIMEIIKGPDFPTGATILGTR-GIEEAYRTGRGK 245 Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309 RVRA +E + G IVVTE+PY V K+RLIEKIAEL+ K+I + D+ D+S+ + Sbjct: 246 IRVRAVSNIEPMQNGKHRIVVTELPYMVNKARLIEKIAELVRDKKIDGITDLSDQSSREG 305 Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369 V R ++P++++ ++ + ++ F + M L + P+VM L IL +L H+ Sbjct: 306 MRVCIELRRDVNPNVVLNQLYKHTQLQDTFGVIMLAL-VNNEPKVMSLLEILNHYLKHQE 364 Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTEN 426 +V+ RR+ + + + R IL+GLLIA NIDE+I IIR K ++SRF+L++ Sbjct: 365 DVVTRRTKYELNKAEERAHILEGLLIALDNIDEVIKIIRGSKTVQIAKAELMSRFNLSDA 424 Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486 Q AI+++RLR+L LE ++++E L + + ++L K I KEI Sbjct: 425 QSQAIVDMRLRALTGLEREKLETEYAELEKKIAEYKAILADRKLLLGVIK------KEIL 478 Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD------- 539 S G R T D +T + +I +E + + ++ G+I+ + + + Sbjct: 479 VISEKYGDDRRTAIGFDEYDIST--EDLIPREDVVITMTKMGYIKRMSNDTFKSQNRGGK 536 Query: 540 -LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEAIQLLIDL 596 + + + D ++ +T I+ + G+ Y L + +GR G AI ++ L Sbjct: 537 GIKGMQTLDEDYVEELFMTNTHQYIMFFTNTGRCYRLKGYEIPEAGRTSRGTAIINILQL 596 Query: 597 NHNQDIVTAFV----YDSTCKLLVVSSKGNAFIVEESEII--ANTRKGKTFLKVSSEEKM 650 ++ I TA + + L + + KG +V+++ I+ AN RK E+ Sbjct: 597 QPDEKI-TAMIPIKDFKEGDYLFMATKKG---LVKKTPILDYANVRKTGLAAITLREDDE 652 Query: 651 KLVVKVTGDHVAVV 664 + VK+T D V+ Sbjct: 653 LIEVKITDDERDVI 666 >gi|255283819|ref|ZP_05348374.1| DNA gyrase, A subunit [Bryantella formatexigens DSM 14469] gi|255265702|gb|EET58907.1| DNA gyrase, A subunit [Bryantella formatexigens DSM 14469] Length = 818 Score = 396 bits (1018), Expect = e-108, Method: Compositional matrix adjust. Identities = 246/677 (36%), Positives = 391/677 (57%), Gaps = 43/677 (6%) Query: 13 VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72 V + V V L+ +E+ Y+ YA+S I RA+PD+RDG KPV RR++++M E+ Sbjct: 5 VFDKVHEVDLKKTMEQSYIEYAMSVIASRALPDVRDGLKPVQRRVLYSMIELNNGPDKPH 64 Query: 73 KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132 +K ARIVG+ +GK HPHGD S+Y +LV +AQP+ RYPL+ G GNFG++DGD AAA RYT Sbjct: 65 RKCARIVGDTMGKYHPHGDSSIYGALVNMAQPWSTRYPLVDGHGNFGSVDGDGAAAMRYT 124 Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192 EAR+++++ +L +++D VDF+ ++E + EPVV PS+FPNLL NGTSGIAVGMAT+IP Sbjct: 125 EARLSKISMEMLADINKDTVDFKPNFDETEKEPVVLPSRFPNLLVNGTSGIAVGMATNIP 184 Query: 193 SHNVQEICEAALALIDN-----PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247 HN++E+ A + +IDN E IE++L+ I GPDFPTG I+ +R I E+YR GR Sbjct: 185 PHNLREVIAAVVKIIDNRIEEDRETKIEEILKIIKGPDFPTGAQILGTR-GIEEAYRTGR 243 Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307 G RVRA +E + G I+VTE+PY V K+RLIEKIA+L+ K+I + + DES+ Sbjct: 244 GKIRVRAVTNIETMPNGKSHIIVTELPYLVNKARLIEKIADLVKEKKIDGITALTDESSR 303 Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNM-NVLSMGR---VPQVMPLDGILKE 363 + + R ++ ++++ ++ + ++ F + M V+S G P+V+ L +L Sbjct: 304 EGMRINIELRRDVNANVILNQLYKHTQLQDTFGVIMLAVVSRGNDILQPKVLNLLEMLDY 363 Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSR 420 +L H+ +V+ RR+ + + + R IL+GLLIA NIDE+I IIR K +++R Sbjct: 364 YLKHQEDVVTRRTKYELNKAEERAHILEGLLIALDNIDEVIHIIRGSRSTQIAKESLMAR 423 Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480 F LT+ Q AI+++RLR+L LE ++++E L+ ++ ++L K I EI Sbjct: 424 FELTDAQAQAIVDMRLRTLTGLERERLEAEYAELMKRIGELKAILADEKLLLGVIKKEIT 483 Query: 481 EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD- 539 E+ + + G R T D + +I +E + + ++ G+I+ + + Sbjct: 484 EISDKY------GDDRKTSIGFDEFDFTV--EDLIPEENVVITMTRLGYIKRMTPDNFKS 535 Query: 540 -------LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEAI 590 + + + D+++ T + ++ + GK Y L A + +GR G AI Sbjct: 536 QNRGGKGIKGMQTIDEDNIEELFMTSTHEYLMFFTNLGKVYRLKAYEIPEAGRTARGTAI 595 Query: 591 QLLIDLNHNQDIVTAFV----YDSTCKLLVVSSKGNAFIVEESEII--ANTRKGKTFLKV 644 L+ L + I TA + Y+ L + + KG +V+++ I AN RK + Sbjct: 596 INLLQLAPEEKI-TAVIPIREYNEDHYLFMATKKG---LVKKTPITDYANVRK-TGLAAI 650 Query: 645 SSEEKMKLV-VKVTGDH 660 S E +L+ VK T +H Sbjct: 651 SLREDDELIEVKFTDNH 667 >gi|322411690|gb|EFY02598.1| DNA gyrase subunit A [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 834 Score = 396 bits (1018), Expect = e-108, Method: Compositional matrix adjust. Identities = 224/580 (38%), Positives = 355/580 (61%), Gaps = 26/580 (4%) Query: 12 LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71 + + N+ V+L ++ ++ YA+S I RA+PD+RDG KPVHRRI++ M+E+G+ Sbjct: 1 MQDRNLIDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVMPDKT 60 Query: 72 FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131 KKSARI G+V+GK HPHGD S+Y+++VR+AQ + R+ L+ G GNFG++DGD AAA RY Sbjct: 61 HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRY 120 Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191 TEARM+++A +L+ ++++ VDF+D Y+ + EP+V P++FPNLL NG +GIAVGMAT+I Sbjct: 121 TEARMSKIALELLRDINKNTVDFQDNYDGSEREPLVLPARFPNLLVNGATGIAVGMATNI 180 Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251 P HN+ E +A +++NP+ + L+E I GPDFPTG +++ R I +Y G+G Sbjct: 181 PPHNLAESIDAVKMVMENPDCTTRDLMEVIPGPDFPTGALVM-GRSGIHRAYDTGKGSIV 239 Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVR 310 +R+R +E G IVVTE PY V K+++ E I L KRI + +RDES+ E VR Sbjct: 240 LRSRTEIETTKTGRERIVVTEFPYGVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGVR 299 Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370 V+ + R ++++ ++F L+ ++T F NM + G VP+++ L I+ +++H++E Sbjct: 300 FVIEIR-RDASANVILNNLFKLTSLQTNFSFNMLAIENG-VPKILSLRQIIDNYISHQKE 357 Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQ 427 V+ RR+ F + R IL+GLLIA ++DE+IAIIRN + + ++SRF+L+E Q Sbjct: 358 VITRRTQFDKNKAEARAHILEGLLIALDHLDEVIAIIRNSETDVIAQAELMSRFNLSERQ 417 Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487 AIL++RLR L LE +I+SE D LLA + +L ++ I E+ E+K ++ Sbjct: 418 SQAILDMRLRRLTGLERDKIQSEYDELLALIADLADILAKPERVVTIIKEEMDEIKRKYA 477 Query: 488 KSTDLGRRRTTFC--EVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHS 537 RRT EV + + +IE+E + + +SN+G+I+ L K Sbjct: 478 NP-----RRTELMIGEVL----SLEDEDLIEEEDVLITLSNKGYIKRLAQDEFRAQKRGG 528 Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPA 577 + + D ++ + T D +L + G+ Y L A Sbjct: 529 RGVQGTGVNDDDFVRELVSTSTHDTLLFFTNFGRVYRLKA 568 >gi|323136305|ref|ZP_08071387.1| DNA gyrase, A subunit [Methylocystis sp. ATCC 49242] gi|322398379|gb|EFY00899.1| DNA gyrase, A subunit [Methylocystis sp. ATCC 49242] Length = 912 Score = 396 bits (1018), Expect = e-108, Method: Compositional matrix adjust. Identities = 249/713 (34%), Positives = 394/713 (55%), Gaps = 64/713 (8%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 +++ VS+ ++ YL YA+S I RA+PD+RDG KPVHRRI+ +M+E G + KS Sbjct: 17 DIRPVSIADEMKRSYLDYAMSVIVSRALPDVRDGLKPVHRRILFSMNENGHTPDKPYVKS 76 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 ARIVG+V+GK HPHGD ++YD+LVR+AQPF R L+ GQGNFG++D D AA RYTE+R Sbjct: 77 ARIVGDVMGKYHPHGDAAIYDALVRMAQPFSMRLMLVDGQGNFGSVDNDPPAAMRYTESR 136 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 + + A +L+ +DE VDF+ Y+ ++SEP V P++FPNLL NG GIAVGMAT+IP HN Sbjct: 137 LAKPALALLEDIDEGTVDFQPNYDGKESEPTVLPARFPNLLVNGAGGIAVGMATNIPPHN 196 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 + E+ +AA+ALID P++++ +L+E + GPDFPT I+ R I +Y GRG +RA+ Sbjct: 197 LGEVIDAAIALIDKPDMTVAELMEIVPGPDFPTAATIL-GRGGIRNAYATGRGSIIMRAK 255 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314 +E + + I+ TEIPYQV K+ LIE+IAEL+ KR+ + D+RDES D +RIV+ Sbjct: 256 AEIETLRKEREAIIFTEIPYQVNKAALIERIAELVKEKRVEGIADLRDESDRDGMRIVVE 315 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K ++ D+++ ++ + +++ F +NM L+ GR P++M L +L+ ++ R V+ R Sbjct: 316 LKREAV-ADVVLNQLWRHTALQSSFAVNMIALNGGR-PELMTLHDVLRAFVDFRETVVTR 373 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE-------------DKPKPVMV--- 418 R+ FR+ + GL IA NIDE+I +IRN D P M Sbjct: 374 RTKFRLAKARDNAHLQVGLAIAVANIDEVIRLIRNSPDAAAAREALMARDWPAKDMAPLV 433 Query: 419 -------------SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLL 465 L+E Q AIL+LRL+ L L +I L+ L AE + +L Sbjct: 434 ELIADPRHKLSHDGTIRLSEAQARAILDLRLQRLTALGREEIAEALNKLAAEIAEYLEIL 493 Query: 466 NSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVIS 525 S ++ + I E+ VKE ++ RRT +++ A+ + +I +E + V +S Sbjct: 494 RSREKLFGIIKDEMLAVKEAYATP-----RRT---QITDAEGDVEDEDLIAREDMVVTVS 545 Query: 526 NRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT--- 574 + G+I R+ + S + KE D + A+T +L S+ GKAY Sbjct: 546 HAGYIKRVPLSTYRAQRRGGKGRSGMQMKEEDFVHRLFVANTHTPVLFFSSRGKAYKEKV 605 Query: 575 --LPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD------STCKLLVVSSKGNAFIV 626 LP L + + G+A+ ++ L + I T +T ++ ++ G Sbjct: 606 WRLP---LAAPQARGKALVNMLPLESGERITTIMPLPEDESSWATLDVIFATTGGTVRRN 662 Query: 627 EESEIIANTRKGKTFLKVSSEEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQI 678 + S+ + R G +K+ E + V T D + + + + + F++ ++ Sbjct: 663 KLSDFVDVRRNGLIAMKLDDGEAIVDVATATEHDDILLTTSDGQCIRFAVPEV 715 >gi|260170231|ref|ZP_05756643.1| DNA gyrase subunit A [Bacteroides sp. D2] gi|315918594|ref|ZP_07914834.1| conserved hypothetical protein [Bacteroides sp. D2] gi|313692469|gb|EFS29304.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 858 Score = 396 bits (1018), Expect = e-108, Method: Compositional matrix adjust. Identities = 261/777 (33%), Positives = 420/777 (54%), Gaps = 57/777 (7%) Query: 12 LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71 L ++ + +++ ++ Y+ Y++S I RA+PD+RDGFKPVHRRI++ M E+G Sbjct: 2 LEQDRIIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILYGMMELGNTSDKP 61 Query: 72 FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131 +KKSARIVGEV+GK HPHGD SVY ++VR+AQ + RYPL+ GQGNFG++DGDS AA RY Sbjct: 62 YKKSARIVGEVLGKYHPHGDSSVYFAMVRMAQEWAMRYPLVDGQGNFGSVDGDSPAAMRY 121 Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191 TEAR+ ++ E ++ + ++ VDF ++ EP V P++ PNLL NG SGIAVGMAT++ Sbjct: 122 TEARLNKLGEAMMDDLYKETVDFEPNFDNTLVEPKVMPTRIPNLLVNGASGIAVGMATNM 181 Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251 P HN+ E+ EA A IDNPEI++E+L+E++ PDFPTGG I + E+Y GRG Sbjct: 182 PPHNLSEVIEACDAYIDNPEITVEELMEFVKAPDFPTGGYIY-GVSGVREAYLTGRGRVI 240 Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VR 310 +RA+ +E G+ IV+TEIPY V K+ LI+ IA+L+ K+I + + DES D +R Sbjct: 241 MRAKAEIES-GQTHDKIVITEIPYNVNKAELIKYIADLVNDKKIEGISNANDESDRDGMR 299 Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370 IV+ K R + +++ ++ ++ ++T F +N L GR P+ + L ++K ++ HR E Sbjct: 300 IVIDIK-RDANASVVLNKLYKMTALQTSFGVNNVALVHGR-PKTLNLRDLIKYFIEHRHE 357 Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQ 427 V+ RR+ F ++ R IL+GL+IA NIDE+I IIR P ++ RF+LTE Q Sbjct: 358 VVIRRTQFDLRKAKERAHILEGLIIASDNIDEVIRIIRAAKTPNDAITGLIERFNLTEIQ 417 Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487 AI+ +RLR L L + Q+ +E + ++ + ++S+L + + E+ EVK + Sbjct: 418 ARAIVEMRLRQLTGLMQDQLHAEYEEIMKQIAYLESILADDEVCRRVMKEELLEVK---A 474 Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVD 539 K D+ R E+ + + + + + + IS+ G+I R+ V Sbjct: 475 KYGDVRR-----SEIVYSSEEFNPEDFYADDQMIITISHMGYIKRTPLTEFRAQNRGGVG 529 Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLN 597 ++ D ++ A + ++ + GK Y L + G G AIQ L++++ Sbjct: 530 SKGTETRDEDFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTKNSKGRAIQNLLNID 589 Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG---KTFLKVSSEEKMKLVV 654 + D VTA+ L V S ++ + ++ T+KG KT L+ S + V Sbjct: 590 SD-DNVTAY--------LRVKSLEDSEFINSHYVLFCTKKGVIKKTLLEQYSRPRQNGVN 640 Query: 655 KVT---------------GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGIS 698 +T + + + N + + F + M R GVR + + G Sbjct: 641 AITIREDDSVIEVRMTNGNNEIIIANRNGRAIRFHEAAVRVMGRTATGVRGITLDNDGQD 700 Query: 699 DV---ICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752 +V IC K E + + + + Y + RGG G ++GK ++ Sbjct: 701 EVVGMICIKDLETESVMVVSEQGYGKRSEIEDYRKTNRGGKGVKTMNITEKTGKLVT 757 >gi|116511953|ref|YP_809169.1| DNA gyrase subunit A [Lactococcus lactis subsp. cremoris SK11] gi|116107607|gb|ABJ72747.1| DNA gyrase subunit A [Lactococcus lactis subsp. cremoris SK11] Length = 836 Score = 396 bits (1018), Expect = e-108, Method: Compositional matrix adjust. Identities = 266/757 (35%), Positives = 420/757 (55%), Gaps = 47/757 (6%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 ++NV V+L ++ + YA+S I RA+PD+RDG KPVHRRI++ M+E+G K Sbjct: 10 DKNVINVNLVEEMKTSFRDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGNTPDKPHK 69 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSARIVGEV+GK HPHGD S+Y+++VR+AQ + R+ L G GNFG++DGD AAA RYTE Sbjct: 70 KSARIVGEVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLADGHGNFGSMDGDGAAAMRYTE 129 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 AR++++A +L+ ++++ VDF D ++ + EP+V P++FPNLL NGT+GIAVGMAT+IP Sbjct: 130 ARLSKIAMEMLRDINKNTVDFMDNFDGTEREPLVLPARFPNLLVNGTTGIAVGMATNIPP 189 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E +A L++NPE S+ L+ I GPDFPTG +++ + I +Y G+G +R Sbjct: 190 HNLGETIDAVDMLMENPEASVTDLMSVIPGPDFPTGALVM-GKSGIRRAYETGKGSITLR 248 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312 A+ +EE+ G IVVTE+PY V K+RL+E I L KRI L +RDES E +R+V Sbjct: 249 AKTHIEEMAGGKERIVVTELPYMVNKARLVEHIVRLNHEKRIEGLTAVRDESNREGIRVV 308 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 + + R L +++ ++F L+ ++T F NM + G +P+++ L IL +++ H+ EV+ Sbjct: 309 IEVR-RDLSAHVILNNLFKLTSLQTSFGFNMLAIEKG-IPKILSLKEILVDYIEHQIEVV 366 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVD 429 RR++F + R IL+GL IA NID II IIR + M+ F L+E Q Sbjct: 367 ERRTAFDKARAEARAHILEGLRIALDNIDRIITIIRESQTDAIAQKTMMDEFLLSEKQSQ 426 Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489 AIL++RLR L LE +I++E +L+A + +L ++ I E+ EVK F+ Sbjct: 427 AILDMRLRRLTGLERDKIEAEYQDLVALIADLTDILAKPERVKKIIREELEEVKRKFAD- 485 Query: 490 TDLGRRRTTFC--EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------D 539 +RRT EV + +IE+E + + +SN+G+I+ L + Sbjct: 486 ----KRRTELLVGEVL----TLEDEDLIEEEDVLITLSNKGYIKRLANDEFRAQNRGGRG 537 Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS-GR-GHGEAIQLLIDLN 597 + + + D ++ + T D +L + G+ Y + + GR G I L+ L+ Sbjct: 538 VQGMGMSDDDFVQHLVSTSTHDHLLFFTNLGRVYRMKGYEIPEYGRTAKGLPIVNLLKLD 597 Query: 598 HNQDIVTAFVY--DSTCKLLVVSSKGNAFIVEESEIIANTR-KGKTFLKVSSEEKMKLVV 654 + I T D K L +++ + +N R G LK+ +++ V+ Sbjct: 598 DGEKIATIINVDRDQAAKYLFFTTRNGIVKRTSTSQFSNIRTNGLKALKLRDGDELINVL 657 Query: 655 KVTGDHVAVVGENRKLLI-FSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712 + +G+ ++G + + F + +M R GV+ + ++G D + G + I Sbjct: 658 RTSGEDEVIIGTHLGYSVRFKGAIVRDMGRAAAGVKGVNLREG---DFVV-----GTSRI 709 Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGK 749 D + SEN LGKR KG R GK Sbjct: 710 DDSQEVLVISEN----GLGKRTQASEYPTKG--RGGK 740 >gi|73916142|gb|AAZ92939.1| DNA gyrase subunit A [Streptococcus pneumoniae] Length = 788 Score = 396 bits (1018), Expect = e-108, Method: Compositional matrix adjust. Identities = 246/674 (36%), Positives = 393/674 (58%), Gaps = 38/674 (5%) Query: 46 LRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPF 105 +RDG KPVHRRI++ M+E+G+ KKSARI G+V+GK HPHGD S+Y+++VR+AQ + Sbjct: 1 VRDGLKPVHRRILYGMNELGVTPDKPHKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWW 60 Query: 106 VQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEP 165 RY L+ G GNFG++DGDSAAA RYTEARM+++A +L+ ++++ VDF D Y+ + EP Sbjct: 61 SYRYMLVDGHGNFGSMDGDSAAAQRYTEARMSKIALEMLRDINKNTVDFVDNYDANEREP 120 Query: 166 VVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPD 225 +V P++FPNLL NG +GIAVGMAT+IP HN+ E +A ++DNPE++ + L+E + GPD Sbjct: 121 LVLPARFPNLLVNGATGIAVGMATNIPPHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPD 180 Query: 226 FPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEK 285 FPTG +++ + I ++Y G+G +R+R +E G IVVTE PY V K+++ E Sbjct: 181 FPTGALVM-GKSGIHKAYETGKGSIALRSRTEIETTKTGRERIVVTEFPYMVNKTKVHEH 239 Query: 286 IAELIIAKRIPLLEDIRDESA-EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMN 344 I L+ KRI + +RDES E VR V+ K R ++++ ++F ++ M+T F NM Sbjct: 240 IVRLVQEKRIEGITAVRDESNREGVRFVIEVK-RDASANVILNNLFKMTQMQTNFGFNML 298 Query: 345 VLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEII 404 + G +P+++ L IL ++ H++EV+ RR+ F + + R IL+GLLIA +IDE+I Sbjct: 299 AIQNG-IPKILSLRQILDAYIEHQKEVVVRRTRFDKEKAEARAHILEGLLIALDHIDEVI 357 Query: 405 AIIR---NEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKI 461 IIR + + + ++S+F L+E Q AIL++RLR L LE +I+SE D+LLA + Sbjct: 358 RIIRASETDAEAQAELMSKFKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADL 417 Query: 462 DSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ-QAMIEKEPI 520 +L ++ I E+ EVK FS +RRT E+ +L+ + +IE+ + Sbjct: 418 ADILAKPERVSQIIKDELDEVKRKFSD-----KRRT---ELMVGQVLSLEDEDLIEESDV 469 Query: 521 TVVISNRGWIRSL--------KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKA 572 + +SNRG+I+ L K + K+ D ++ + T D +L + G+ Sbjct: 470 LITLSNRGYIKRLDQDEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRV 529 Query: 573 YTLPAGNLLS-GR-GHGEAIQLLIDLNHNQDIVTAFVYDS----TCKLLVVSSKGNAFIV 626 Y L + GR G + L+ L+ ++ I T +S L + G IV Sbjct: 530 YRLKGYEIPEYGRTAKGLPVVNLLKLDEDESIQTVINVESDRSDDAYLFFTTRHG---IV 586 Query: 627 EESEI--IANTRK-GKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLI-FSIDQIPEMS 682 + + + AN R+ G L + E+++ V+ GD ++G + F+ + MS Sbjct: 587 KRTSVKEFANIRQNGLKALNLKDEDELINVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMS 646 Query: 683 R-GKGVRLQSYKDG 695 R GV+ + ++G Sbjct: 647 RIATGVKGVNLREG 660 >gi|222153032|ref|YP_002562209.1| DNA gyrase subunit A [Streptococcus uberis 0140J] gi|222113845|emb|CAR41948.1| DNA gyrase subunit A [Streptococcus uberis 0140J] Length = 837 Score = 396 bits (1018), Expect = e-108, Method: Compositional matrix adjust. Identities = 225/578 (38%), Positives = 350/578 (60%), Gaps = 22/578 (3%) Query: 12 LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71 + + N+ V+L ++ ++ YA+S I RA+PD+RDG KPVHRRI++ M+E+G+ Sbjct: 1 MQDRNLIDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKP 60 Query: 72 FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131 KKSARI G+V+GK HPHGD S+Y+++VR+AQ + R+ L+ G GNFG++DGD AAA RY Sbjct: 61 HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRY 120 Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191 TEARM+++A +L+ ++++ VDF+D Y+ + EP+V P++FPNLL NG +GIAVGMAT+I Sbjct: 121 TEARMSKIALELLKDINKNTVDFQDNYDGSEREPLVLPARFPNLLVNGATGIAVGMATNI 180 Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251 P HN+ E EA ++ NP+ + L+E I GPDFPTG +++ R I +Y G+G Sbjct: 181 PPHNLGESIEAVKMVMQNPDCTTRDLMEVIPGPDFPTGALVM-GRSGIHRAYDTGKGSIV 239 Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVR 310 +R+R +E G IVVTE PY V K+++ E I L KR+ + +RDES+ E VR Sbjct: 240 LRSRTEIETTSTGRERIVVTEFPYGVNKTKVHEHIVRLAQEKRLDGITAVRDESSREGVR 299 Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370 V+ + R ++++ ++F L+ ++T F NM + G VP+++ L I+ ++ H+ E Sbjct: 300 FVIEVR-RDASANVILNNLFKLTSLQTNFSFNMLAIENG-VPKILTLRQIIDNYIKHQIE 357 Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQ 427 V+ RR+ F + R IL+GLLIA ++DE+IAIIRN + + ++SRF L+E Q Sbjct: 358 VITRRTQFDKDKAEARAHILEGLLIALDHLDEVIAIIRNSETDVIAQTELMSRFDLSERQ 417 Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487 AIL++RLR L LE +I+SE D+L+A + +L + ++ A I E+ EI Sbjct: 418 SQAILDMRLRRLTGLERDKIQSEYDDLIALIADLTDILANPERVK---AIIIEEMDEIKR 474 Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSVD 539 K D R EV + + +IE+E + + SN+G+I+ L K Sbjct: 475 KYADARRTELMIGEVL----SLEDEDLIEEEDVLITFSNKGYIKRLAQDEFRAQKRGGRG 530 Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPA 577 + + D +K + T D +L + G+ Y L A Sbjct: 531 VQGTGVNDDDFVKELVSTSTHDTLLFFTNKGRVYRLKA 568 >gi|227498780|ref|ZP_03928920.1| type IIA topoisomerase [Acidaminococcus sp. D21] gi|226904232|gb|EEH90150.1| type IIA topoisomerase [Acidaminococcus sp. D21] Length = 838 Score = 396 bits (1018), Expect = e-108, Method: Compositional matrix adjust. Identities = 277/791 (35%), Positives = 426/791 (53%), Gaps = 63/791 (7%) Query: 4 DNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63 D + T+ V V + +++ Y+ YA+S I +RA+PD+RDG KPVHRRI++AM+E Sbjct: 3 DQQNEGQTITAGKVIPVYVEEEMQKSYIDYAMSVIVQRALPDVRDGLKPVHRRILYAMNE 62 Query: 64 MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123 G+ A+KKSARIVG+V+GK HPHGD SVYD++VRLAQ F RY ++ G GNFG+IDG Sbjct: 63 AGMLPNKAYKKSARIVGDVLGKYHPHGDFSVYDAIVRLAQDFSTRYLMVDGHGNFGSIDG 122 Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183 D AA RYTE RM ++A +L+ +++D VDF Y+E EP V PSK P LL NG++GI Sbjct: 123 DPPAAMRYTEVRMGKIAVEMLRDIEKDTVDFIPNYDESLKEPTVLPSKVPALLINGSAGI 182 Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243 AVGMAT+IP HN+ E+ +A + LID+P+ +IE L+ I GPDFPTG I+ I ++Y Sbjct: 183 AVGMATNIPPHNLGEVVDALVMLIDHPDATIEDLMGAIKGPDFPTGAQIL-GVSGIRQAY 241 Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303 GRG +VRA+ VE + + IVVTEIPYQV K+RLIE IA L+ K + + D+RD Sbjct: 242 TTGRGVVKVRAKAHVEPMPKNKNRIVVTEIPYQVNKARLIESIAHLVQDKTLEGITDLRD 301 Query: 304 ES-AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362 ES + +RIV+ ++ + P++++ ++ + M+ F + L G P+++ L IL Sbjct: 302 ESDRKGMRIVIELRS-DIIPEIMLNKLYKHTQMQESFGIIQLALVKGH-PRILNLKEILV 359 Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVS 419 +L H++EV+ R++ + + R IL GL IA ++DE+IA IR+ + + ++S Sbjct: 360 YYLEHQKEVITRKTRYELNKAKERAHILAGLKIALDHLDEVIATIRSSATAEIARASLIS 419 Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479 +F L+E Q AIL++RL+ L LE +I+ E ++A ++S+L + + Sbjct: 420 KFGLSEKQAQAILDMRLQRLTGLERKKIEDEYTEVMATIAYLESVLADEHKIMGIAKDDF 479 Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------- 530 +VK+ F RR + + D + +I +E I + IS++ +I Sbjct: 480 LDVKKRFGDP----RRTSIVPDAGEID----AEDLIAEEDIVITISHQSYIKRQALTNFR 531 Query: 531 ------RSLKSHSVDLSALHFK-EGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAG 578 R +K+ S + K GD + L A T D IL + G K Y +P Sbjct: 532 NQNRGGRGVKAGSGKIVKEDNKVTGDFSEHLLLASTHDNILFFTNQGRVYRQKGYEIPE- 590 Query: 579 NLLSGR-GHGEAIQLLIDLNHNQDIV------TAFVYDSTCKLLVVSSKGNAFIVEESEI 631 +GR G I+ L+ L N+ I T D L + ++KG SE Sbjct: 591 ---AGRQAKGTFIRNLLPLVENEKITAIIAVKTGISEDENKFLFMATNKGVIKKTSVSEF 647 Query: 632 IANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRK--LLIFSIDQIPEMSR-GKGVR 688 R G + + +E + + VK+T H ++ R + F+ + M R GVR Sbjct: 648 KTARRAGLIAINLDDDEDL-IDVKLTSGHHDILLATRDGYAIRFNESDVRPMGRTAHGVR 706 Query: 689 LQSYKDGGISDVICFKICEG-----LTWIDSA-GRSYNRSENDLLGWLGKRGGVGSLVPK 742 + + + ++ CEG LT + G+ + SE L RGG G + K Sbjct: 707 GITLRHHDV--LVSMDSCEGDSGEVLTVTEGGLGKRTDISEY----RLQTRGGKGIINLK 760 Query: 743 GFPRSGKFLSS 753 ++G + S Sbjct: 761 VTNKTGDIVGS 771 >gi|194467408|ref|ZP_03073395.1| DNA gyrase, A subunit [Lactobacillus reuteri 100-23] gi|194454444|gb|EDX43341.1| DNA gyrase, A subunit [Lactobacillus reuteri 100-23] Length = 834 Score = 396 bits (1018), Expect = e-108, Method: Compositional matrix adjust. Identities = 248/706 (35%), Positives = 398/706 (56%), Gaps = 50/706 (7%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + V+L ++ +L YA+S I RA+PD+RDG KPV RRI++ M+E+G+ +KKSA Sbjct: 10 ITDVNLTSQMKNSFLDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVTPDKPYKKSA 69 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 RIVG+V+GK HPHGD S+Y+ LVR+AQ F RY L+ G GNFG++DGD AAA RYTEA+M Sbjct: 70 RIVGDVMGKFHPHGDSSIYEGLVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAMRYTEAKM 129 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 +++A +L+ ++++ VDF D Y+ + EP V P++FPNLL NG SGIAVGMAT+IP+HN+ Sbjct: 130 SKIAVEMLRDINKNTVDFHDNYDGTEKEPDVLPARFPNLLVNGASGIAVGMATNIPTHNL 189 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ L++NP+I+ E L++ I GPDFPTGG+++ + I ++Y GRG VRA+ Sbjct: 190 GEVINGLHMLMNNPDITTEGLMKAIPGPDFPTGGVVM-GKSGIRKAYETGRGTIIVRAKV 248 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316 +EE G I+V EIPY V K++LIE+IAEL K I + D+ DE+ D ++ Sbjct: 249 DIEEQKNGKQRIIVHEIPYMVNKAKLIERIAELARNKDIDGITDVNDETDRDGMRIVIDV 308 Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376 R ++++ +++ ++ M+T F NM + G P+++ L IL+ +L H+ V+ RR+ Sbjct: 309 RRDASAEVILNNLYKMTLMQTTFNFNMLAIVNG-APKILSLKQILQYYLEHQESVVRRRT 367 Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAILN 433 F ++ R I+ GL IA +IDEII IIRN K +++ + L++ Q AIL+ Sbjct: 368 EFELKKAQNRAHIVAGLRIALDHIDEIINIIRNSQTSEVAKNELMNNYGLSDRQAQAILD 427 Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC-EIREVKEIFSKSTDL 492 +RL L LE +I+ E L+A +L + +++ NQI E+ E+++ F Sbjct: 428 MRLVRLTGLEREKIEDEYQKLMAAIADYKDIL-AHRERINQIIYDELMEIQKRF------ 480 Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL-----KSH---SVDLSALH 544 G R T +V + + E++ I V +++ G+I+ L KS + + Sbjct: 481 GDERRTELQVGDITNIEDEDLIEEED-IIVALTHNGYIKRLPVDEFKSQHRGGRGVKGMG 539 Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTL---------------PAGNLLSGRGHGEA 589 + D ++ + + T D +L + GK Y++ P NLL G + E Sbjct: 540 VHKDDFIEQLISSSTHDMLLFFTNSGKVYSMKGYEVPEYGRAAQGIPIINLL-GINNKEK 598 Query: 590 IQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649 I +I+++H + +++ T KL V + E I +N G L + ++ Sbjct: 599 ISAVINVSHETNDDDKYLF-FTTKLGTVKRTA---VTEFKNIRSN---GLKALNLHENDE 651 Query: 650 MKLVVKVTGDHVAVVG-ENRKLLIFSIDQIPEMSRG----KGVRLQ 690 + V ++ D ++G N L F + M R +G+RL+ Sbjct: 652 LIDVEVISEDQPMIIGTHNGYALSFKSSVVRSMGRSAAGVRGIRLR 697 >gi|73666865|ref|YP_302881.1| DNA gyrase subunit A [Ehrlichia canis str. Jake] gi|72394006|gb|AAZ68283.1| DNA gyrase, subunit A [Ehrlichia canis str. Jake] Length = 898 Score = 396 bits (1018), Expect = e-108, Method: Compositional matrix adjust. Identities = 231/631 (36%), Positives = 359/631 (56%), Gaps = 51/631 (8%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 NV +VS+ LE+ YL+YA+S I RAIPD+RDG KPVHRRI+++M + G D+G +KK+ Sbjct: 6 NVISVSIEQELEDSYLSYAMSVIISRAIPDIRDGLKPVHRRILYSMYKSGYDYGKPYKKA 65 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 AR+VG+V+GK HPH D ++YDSLVR+AQ F PLI QGNFG+IDGD A+ RYTEAR Sbjct: 66 ARVVGDVMGKYHPHADAAIYDSLVRMAQDFSLLLPLIDSQGNFGSIDGDPPASMRYTEAR 125 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 + + A +L +DED VDFR Y+E + EPVV P++FPN+L NG G+AVGM+T+IPSHN Sbjct: 126 LARAAHFLLNDIDEDTVDFRPNYDENEVEPVVLPAEFPNILVNGAGGVAVGMSTNIPSHN 185 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 + E+ +A +A IDNPEI+ ++L+ + GPDFPTGG I+ I ++ G+G V+ + Sbjct: 186 LGEVVDACIAYIDNPEITFDELINIVRGPDFPTGGTIL-GDAGIRSAFMTGKGTIIVQGK 244 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE-DVRIVLF 314 +E++ G I++ EIPYQV K++LIE+I EL+ K+I + D+RDES + +R+ + Sbjct: 245 THLEDLPSGKQAIIIDEIPYQVNKAKLIERIHELVKEKKIEGILDLRDESNKMGIRVAIE 304 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K + + +++ I L+ + T F +N VL + P+VM L I+ ++ +RREVL R Sbjct: 305 LK-KQVSHQVVLNQILGLTPLRTTFSINTLVLENNK-PKVMSLLDIISTFVEYRREVLTR 362 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE------------------------ 410 R+ FR++ + + + G+ IA LNID++I+IIR+ Sbjct: 363 RTQFRLRKVREKAHLYIGMYIAVLNIDKVISIIRSSRDTAEATKRLLECKWDALTSVREM 422 Query: 411 -----DKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLL 465 D V+ LT QV +IL ++L+ L LE+ +++ +L ++++ + LL Sbjct: 423 IELVADTKSLVVDDVCQLTGVQVKSILEMKLQRLTNLEKEKLELDLKSMVSMIRQYTELL 482 Query: 466 NSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVIS 525 + + I + +VK T L R T + S + T + +I KE + V ++ Sbjct: 483 KNKEALLKLIKDGLIDVK------TKLAVPRRTTIDYSHFE--TDVEDLIPKEDMVVTVT 534 Query: 526 NRGWIRSLKSHSVDLS--------ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPA 577 G+I+ K + KE D + +T +L S G+ Y L Sbjct: 535 MSGYIKRAKLSNYRAQRRGGKGRIGQAIKEEDVITNLFVVNTHTSVLFFSNIGRVYKLKV 594 Query: 578 GNLLSGR--GHGEAIQLLIDLNHNQDIVTAF 606 L G G ++ + L+ N+ I + Sbjct: 595 YKLPLGEPTSRGRSLVNIFPLSENESITSVM 625 >gi|323486744|ref|ZP_08092063.1| hypothetical protein HMPREF9474_03814 [Clostridium symbiosum WAL-14163] gi|323694886|ref|ZP_08109036.1| A subunit [Clostridium symbiosum WAL-14673] gi|323399883|gb|EGA92262.1| hypothetical protein HMPREF9474_03814 [Clostridium symbiosum WAL-14163] gi|323500976|gb|EGB16888.1| A subunit [Clostridium symbiosum WAL-14673] Length = 850 Score = 396 bits (1018), Expect = e-108, Method: Compositional matrix adjust. Identities = 229/610 (37%), Positives = 359/610 (58%), Gaps = 28/610 (4%) Query: 13 VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72 V + V + L+ +E Y+ YA+S I RA+PD+RDG KPV RR++ +M E+ Sbjct: 5 VFDKVHDIDLKKTMETSYIDYAMSVIAARALPDVRDGLKPVQRRVLFSMIELNNGPDKPH 64 Query: 73 KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132 +K ARIVG+ +GK HPHGD S+Y +LV +AQ + RYPL+ G GNFG++DGD AAA RYT Sbjct: 65 RKCARIVGDTMGKYHPHGDSSIYGALVNMAQKWSTRYPLVDGHGNFGSVDGDGAAAMRYT 124 Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192 EAR+++++ +L +++D VDF ++E + EPVV PS++PNLL NGTSGIAVGMAT+IP Sbjct: 125 EARLSKISMEMLADINKDTVDFAPNFDETEKEPVVLPSRYPNLLVNGTSGIAVGMATNIP 184 Query: 193 SHNVQEICEAALALIDN-----PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247 HN++E+ + +IDN E S+E++LE + GPDFPTG I+ R I E+YR GR Sbjct: 185 PHNLREVIAGVVKIIDNRVEEGRETSLEEILEIVKGPDFPTGATIL-GRAGIEEAYRTGR 243 Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307 G RVRA + +E + G IVVTE+PY V K+RLIEKIAEL+ K++ + D+RDES Sbjct: 244 GKIRVRAVYDIETLANGKNRIVVTELPYMVNKARLIEKIAELVKEKKVDGITDLRDESNR 303 Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367 + V R ++ ++LM + + ++ F + M L + P+++ L +L+ +L H Sbjct: 304 EGMRVCIELRRDVNANVLMNRLLKHTQLQDTFGVIMLAL-VNNEPRILNLKQMLEYYLQH 362 Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLT 424 + EV+ RR+ + + + R IL+GL+ A +IDE+I IIR N K ++ RF+L+ Sbjct: 363 QEEVVTRRTKYDLNKAEERAHILEGLIKALDHIDEVIKIIRGSANVADAKAQLMERFALS 422 Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484 E Q AI+++RLR+L LE ++++E L+A+ ++ ++L K ++ IRE E Sbjct: 423 EIQAQAIVDMRLRALTGLEREKLENEYRELMAKIAELKAILADEK----KLLGVIRE--E 476 Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD----- 539 I S G R T D + + +I + + V ++N G+I+ + S + Sbjct: 477 IIVISDKYGDERRTAIGYDEYDMSA--EDLIPDDDVVVAMTNFGYIKRMSSDNFKSQNRG 534 Query: 540 ---LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEAIQLLI 594 + + + D ++ L ++ + G+ Y L A + +GR G AI L+ Sbjct: 535 GKGIKGMQTIDEDYIEDLLMTTNHHYVMFFTNTGRVYRLKAYEIPEAGRTARGTAIVNLL 594 Query: 595 DLNHNQDIVT 604 L + I + Sbjct: 595 QLMPGEKITS 604 >gi|206896281|ref|YP_002246983.1| DNA gyrase, A subunit [Coprothermobacter proteolyticus DSM 5265] gi|206738898|gb|ACI17976.1| DNA gyrase, A subunit [Coprothermobacter proteolyticus DSM 5265] Length = 758 Score = 396 bits (1018), Expect = e-108, Method: Compositional matrix adjust. Identities = 243/697 (34%), Positives = 399/697 (57%), Gaps = 36/697 (5%) Query: 26 LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85 L++ Y+ YA+S I RA+PD+RDG KPV RRII++MSE G + +KKSARIVG+V+GK Sbjct: 13 LKQSYIDYAMSVIVGRALPDVRDGLKPVQRRIIYSMSETGSTYNNPYKKSARIVGDVLGK 72 Query: 86 LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145 HPHGD SVYD+LVR+AQ FV RYPL+ G GNFG++DGD AA RYTE R+T+++E ++Q Sbjct: 73 YHPHGDASVYDALVRMAQDFVMRYPLVDGHGNFGSMDGDPPAAMRYTEVRLTRLSEYLVQ 132 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 +D+D V++ ++ EP V P+ FP LL NG+SGIAVG++T IP HN+ EI +A L Sbjct: 133 DLDKDTVNWVPNFDGSLKEPEVLPAVFPQLLVNGSSGIAVGVSTYIPPHNLGEIIDATLH 192 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265 + NPE + +L+ ++ GPDFPTGG I+ ++ +V+ Y G+G RVR R +EE Sbjct: 193 FLHNPEATSRQLMRFVKGPDFPTGGQIINPQD-LVKVYEEGKGVIRVRGRAKLEEGHGQK 251 Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVL-FPKNRSLDPD 323 +V+ EIPY V K+ L+ +IA+LI +++ ++++RDES + VR+VL K S Sbjct: 252 RRLVIYEIPYMVNKAELVSQIAQLIRDRKLSGVDEVRDESNRQGVRVVLELKKGASFHH- 310 Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383 ++ ++ + +E F +NM L G P + L + ++ R+E + RR+ + + Sbjct: 311 -ILNQLYEQTALENSFAINMVALKDG-APVQLTLRDYIASFVDFRKETILRRTRYLLDKA 368 Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLTENQVDAILNLRLRSLR 440 +R E+++G+L A NID +I IIRN D+ K ++S+ LTE Q +A+L ++LRSL Sbjct: 369 SKRREVVEGILKALDNIDLVIEIIRNAETTDQAKRRLMSQIGLTEVQAEAVLEIKLRSLV 428 Query: 441 KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500 +E+ +++ EL++LL + +LNS + IA E++ VK++F+ +R T Sbjct: 429 HMEKEKVEQELESLLKAIAEYTEILNSETKLLEVIAEELKHVKKLFAD------QRRTLI 482 Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTT 560 S T+Q A +E + + G IR K+ + +L + + Sbjct: 483 GFSDQQTETVQAA---EETFFIELLEYGIIRRSKTQT------------NLVDFIEVQGS 527 Query: 561 DRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSK 620 D ++ L+ GK + + A + + G A+ L + +++ ++ + + K Sbjct: 528 DPVMFLTNFGKIFCISAYEIPESQ-RGVALNALFPMGNDEKVLLLGTQNQELIAISEKGK 586 Query: 621 GNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPE 680 G F ++ +I +R G FL + + + ++V VT + V+ K L ++ IPE Sbjct: 587 GKRFRLDVEKI--PSRGGYYFL-LDPGDMVSVIVPVTSKELVVISAQGKALRLDVESIPE 643 Query: 681 MS-RGKGVR-LQSYKDGGISDVICFKICEGLTWIDSA 715 R GV+ +++Y+ + C K +T ++A Sbjct: 644 RGLRTGGVKVMRTYEGDRVVGATCLKQKYIVTMTENA 680 >gi|262373151|ref|ZP_06066430.1| DNA gyrase, A subunit [Acinetobacter junii SH205] gi|262313176|gb|EEY94261.1| DNA gyrase, A subunit [Acinetobacter junii SH205] Length = 910 Score = 396 bits (1018), Expect = e-108, Method: Compositional matrix adjust. Identities = 226/613 (36%), Positives = 354/613 (57%), Gaps = 67/613 (10%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 ++ +++ L+ YL YA+S I RA+PD+RDG KPVHRR++ AM E+G D+ A+KKSA Sbjct: 6 IRPIAIEDELKHSYLDYAMSVIVSRALPDVRDGLKPVHRRVLFAMHELGNDYNKAYKKSA 65 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD +VY+++VR+AQ F RY L+ GQGNFG++DGDSAAA RYTE RM Sbjct: 66 RVVGDVIGKYHPHGDSAVYETIVRMAQDFSLRYMLVDGQGNFGSVDGDSAAAMRYTEVRM 125 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 ++ IL +++D VD+ D Y+ + P V P++ PNLL NGT+GIAVGMAT++ HN+ Sbjct: 126 QKLTHEILADLEKDTVDWEDNYDGSERIPQVMPTRIPNLLINGTTGIAVGMATNMAPHNM 185 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ A LA +NP ISIE L+E+I GPDFPTGGII + IV++YR G+G +R ++ Sbjct: 186 TEVVNACLAYANNPNISIEGLMEHITGPDFPTGGIIY-GKSGIVDAYRTGKGRLHIRGKY 244 Query: 257 CVEEVGR-GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLF 314 EE + G IV TEIPYQV K++ IE+IAEL+ K++ + ++RDES E +RI + Sbjct: 245 HFEEDQKTGRTTIVFTEIPYQVNKAKTIERIAELVKEKKLEGISELRDESDKEGMRIAID 304 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K R + ++++ ++F+ + ++ F +NM L G+ P++M L I+ ++ HR+EV+ R Sbjct: 305 LK-RGENAEVIVNNLFLHTQLQNSFSINMVCLDNGQ-PKLMNLKDIIAAFIRHRQEVVTR 362 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN------------------------- 409 R+ + ++ R IL+GL +A NID II I+ Sbjct: 363 RTMYELRKARERGHILEGLTVALANIDAIIETIKTSANPSEARERLQAGEWAGGGVVALL 422 Query: 410 ---------------EDKPKPVMVSR--FSLTENQVDAILNLRLRSLRKLEEYQIKSELD 452 ED +P +S + L+ QV+AIL LRL L LE+ ++ +E Sbjct: 423 EKAGAISVRPDEIEGEDPARPFGLSGEIYRLSPTQVNAILELRLHRLTGLEQDKLHAEYT 482 Query: 453 NLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF--SKSTDLGRRRTTFCEVSRADKATL 510 +L + ++ ++LN N I E+ + + + ++ T++ FC Sbjct: 483 EILGQIAELTAILNDFNLLMNVIREELALILQQYGDARRTEIVESGVDFC---------- 532 Query: 511 QQAMIEKEPITVVISNRGWIRS--LKSHSVDL------SALHFKEGDSLKIALHAHTTDR 562 ++ +I +E + + +S G+ ++ L + SA K+ D ++ + A Sbjct: 533 REDLIPEEQVVLTVSQTGYAKTQPLSDYQAQRRGGRGKSATSMKDDDIIQHLIVASNHAT 592 Query: 563 ILLLSTDGKAYTL 575 +L + GK Y L Sbjct: 593 VLCFTNVGKVYRL 605 >gi|148543249|ref|YP_001270619.1| DNA gyrase subunit A [Lactobacillus reuteri DSM 20016] gi|184152661|ref|YP_001841002.1| DNA gyrase subunit A [Lactobacillus reuteri JCM 1112] gi|227364312|ref|ZP_03848405.1| DNA gyrase subunit A [Lactobacillus reuteri MM2-3] gi|325683511|ref|ZP_08163027.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus reuteri MM4-1A] gi|148530283|gb|ABQ82282.1| DNA gyrase subunit A [Lactobacillus reuteri DSM 20016] gi|183224005|dbj|BAG24522.1| DNA gyrase subunit A [Lactobacillus reuteri JCM 1112] gi|227070625|gb|EEI08955.1| DNA gyrase subunit A [Lactobacillus reuteri MM2-3] gi|324977861|gb|EGC14812.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus reuteri MM4-1A] Length = 834 Score = 396 bits (1018), Expect = e-108, Method: Compositional matrix adjust. Identities = 248/706 (35%), Positives = 398/706 (56%), Gaps = 50/706 (7%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + V+L ++ +L YA+S I RA+PD+RDG KPV RRI++ M+E+G+ +KKSA Sbjct: 10 ITDVNLTSQMKNSFLDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVTPDKPYKKSA 69 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 RIVG+V+GK HPHGD S+Y+ LVR+AQ F RY L+ G GNFG++DGD AAA RYTEA+M Sbjct: 70 RIVGDVMGKFHPHGDSSIYEGLVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAMRYTEAKM 129 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 +++A +L+ +++D VDF D Y+ + EP V P++FPNLL NG SGIAVGMAT+IP+HN+ Sbjct: 130 SKIAVEMLRDINKDTVDFHDNYDGTEKEPDVLPARFPNLLVNGASGIAVGMATNIPTHNL 189 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ L+++P+I+ E L++ I GPDFPTGG+++ + I ++Y GRG VRA+ Sbjct: 190 GEVINGLHMLMNDPDITTEGLMKAIPGPDFPTGGVVM-GKSGIRKAYETGRGTIIVRAKV 248 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316 +EE G I+V EIPY V K++LIE+IAEL K I + D+ DE+ D ++ Sbjct: 249 DIEEQKNGKQRIIVHEIPYMVNKAKLIERIAELARNKDIDGITDVNDETDRDGMRIVIDV 308 Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376 R ++++ +++ ++ M+T F NM + G P+++ L IL+ +L H+ V+ RR+ Sbjct: 309 RRDASAEVILNNLYKMTLMQTTFNFNMLAIVNG-APKILSLKQILQYYLEHQESVVRRRT 367 Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAILN 433 F ++ R I+ GL IA +IDEII IIRN K +++ + L++ Q AIL+ Sbjct: 368 EFELKKAQNRAHIVAGLRIALDHIDEIINIIRNSQTSEVAKNELMNNYGLSDRQAQAILD 427 Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC-EIREVKEIFSKSTDL 492 +RL L LE +I+ E L+A +L + +++ NQI E+ E+++ F Sbjct: 428 MRLVRLTGLEREKIEDEYQKLMAAIADYKDIL-AHRERINQIIYDELMEIQKRF------ 480 Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL-----KSH---SVDLSALH 544 G R T +V + + E++ I V +++ G+I+ L KS + + Sbjct: 481 GDERRTELQVGDITNIEDEDLIEEED-IIVALTHNGYIKRLPVDEFKSQHRGGRGVKGMG 539 Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTL---------------PAGNLLSGRGHGEA 589 + D ++ + + T D +L + GK Y++ P NLL G + E Sbjct: 540 VHKDDFIEQLISSSTHDMLLFFTNSGKVYSMKGYEVPEYGRAAQGIPIINLL-GINNKEK 598 Query: 590 IQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649 I +I+++H + +++ T KL V + E I +N G L + ++ Sbjct: 599 ISAVINVSHETNDDDKYLF-FTTKLGTVKRTA---VTEFKNIRSN---GLKALNLHENDE 651 Query: 650 MKLVVKVTGDHVAVVG-ENRKLLIFSIDQIPEMSRG----KGVRLQ 690 + V ++ D ++G N L F + M R +G+RL+ Sbjct: 652 LIDVEVISEDQPMIIGTHNGYALSFKSSVVRSMGRSAAGVRGIRLR 697 >gi|227543724|ref|ZP_03973773.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus reuteri CF48-3A] gi|300908789|ref|ZP_07126252.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus reuteri SD2112] gi|154705552|gb|ABS84202.1| DNA gyrase A subunit [Lactobacillus reuteri] gi|227186292|gb|EEI66363.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus reuteri CF48-3A] gi|300894196|gb|EFK87554.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus reuteri SD2112] Length = 829 Score = 396 bits (1018), Expect = e-108, Method: Compositional matrix adjust. Identities = 248/706 (35%), Positives = 398/706 (56%), Gaps = 50/706 (7%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + V+L ++ +L YA+S I RA+PD+RDG KPV RRI++ M+E+G+ +KKSA Sbjct: 10 ITDVNLTSQMKNSFLDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVTPDKPYKKSA 69 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 RIVG+V+GK HPHGD S+Y+ LVR+AQ F RY L+ G GNFG++DGD AAA RYTEA+M Sbjct: 70 RIVGDVMGKFHPHGDSSIYEGLVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAMRYTEAKM 129 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 +++A +L+ ++++ VDF D Y+ + EP V P++FPNLL NG SGIAVGMAT+IP+HN+ Sbjct: 130 SKIAVEMLRDINKNTVDFHDNYDGTEKEPDVLPARFPNLLVNGASGIAVGMATNIPTHNL 189 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ L++NP+I+ E L++ I GPDFPTGG+++ + I ++Y GRG VRA+ Sbjct: 190 GEVINGLHMLMNNPDITTEGLMKAIPGPDFPTGGVVM-GKSGIRKAYETGRGTIIVRAKV 248 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316 +EE G I+V EIPY V K++LIE+IAEL K I + D+ DE+ D ++ Sbjct: 249 DIEEQKNGKQRIIVHEIPYMVNKAKLIERIAELARNKDIDGITDVNDETDRDGMRIVIDV 308 Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376 R ++++ +++ ++ M+T F NM + G P+++ L IL+ +L H+ V+ RR+ Sbjct: 309 RRDASAEVILNNLYKMTLMQTTFNFNMLAIVNG-APKILSLKQILQYYLEHQESVVRRRT 367 Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAILN 433 F ++ R I+ GL IA +IDEII IIRN K +++ + L++ Q AIL+ Sbjct: 368 EFELKKAQNRAHIVAGLRIALDHIDEIINIIRNSQTSEVAKNELMNNYGLSDRQAQAILD 427 Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC-EIREVKEIFSKSTDL 492 +RL L LE +I+ E L+A +L + +++ NQI E+ E+++ F Sbjct: 428 MRLVRLTGLEREKIEDEYQKLMAAIADYKDIL-AHRERINQIIYDELMEIQKRF------ 480 Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL-----KSH---SVDLSALH 544 G R T +V + + E++ I V +++ G+I+ L KS + + Sbjct: 481 GDERRTELQVGDITNIEDEDLIEEED-IIVALTHNGYIKRLPVDEFKSQHRGGRGVKGMG 539 Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTL---------------PAGNLLSGRGHGEA 589 + D ++ + + T D +L + GK Y++ P NLL G + E Sbjct: 540 VHKDDFIEQLISSSTHDMLLFFTNSGKVYSMKGYEVPEYGRAAQGIPIINLL-GINNKEK 598 Query: 590 IQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649 I +I+++H + +++ T KL V + E I +N G L + ++ Sbjct: 599 ISAVINVSHETNDDDKYLF-FTTKLGTVKRTA---VTEFKNIRSN---GLKALNLHENDE 651 Query: 650 MKLVVKVTGDHVAVVG-ENRKLLIFSIDQIPEMSRG----KGVRLQ 690 + V ++ D ++G N L F + M R +G+RL+ Sbjct: 652 LIDVEVISEDQPMIIGTHNGYALSFKSSVVRSMGRSAAGVRGIRLR 697 >gi|15616799|ref|NP_240011.1| DNA gyrase subunit A [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|11132931|sp|P57277|GYRA_BUCAI RecName: Full=DNA gyrase subunit A gi|25292843|pir||A84951 DNA topoisomerase (ATP-hydrolyzing) (EC 5.99.1.3) chain A [imported] - Buchnera sp. (strain APS) gi|10038862|dbj|BAB12897.1| DNA gyrase subunit A [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] Length = 830 Score = 396 bits (1018), Expect = e-108, Method: Compositional matrix adjust. Identities = 233/590 (39%), Positives = 357/590 (60%), Gaps = 44/590 (7%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 V++ L+ YL Y++S I RA+PD+RDG KPVHRRI+ AM + D+ A+KKSARIV Sbjct: 11 VNIEEELKSSYLDYSMSVIVGRALPDVRDGLKPVHRRILFAMYILNNDWNKAYKKSARIV 70 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGD +VYD++VR+AQ F RY LI GQGNFG++DGDSAAA RYTE RM+++ Sbjct: 71 GDVIGKYHPHGDSAVYDAIVRMAQKFSLRYMLIDGQGNFGSVDGDSAAAMRYTEVRMSKI 130 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A +L ++++ V+F Y+ + P + P+K PNLL NG+SGIAVGMAT+IP HN+ E+ Sbjct: 131 AHELLNDLEKNTVEFLPNYDGTEYIPEILPAKIPNLLINGSSGIAVGMATNIPPHNLNEV 190 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV- 258 LA IDN +I++E+L+++I GPDFPT II + I E+YR G+G +RA+ + Sbjct: 191 INGCLAYIDNNDITLEELIKHIPGPDFPTAAII-NGKSGIEEAYRTGKGKIYIRAQNQIE 249 Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKN 317 + IV EIPYQV KSRLIEKIAEL+ KRI + +RDES +D +RIV+ K Sbjct: 250 KNKKNKKESIVFNEIPYQVNKSRLIEKIAELVKEKRIDGITALRDESDKDGMRIVIEIKR 309 Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377 ++ ++++ ++ L+ ++ F +NM L G+ P+ + L ILK +L+HR+E++ RRS Sbjct: 310 EAI-AEVILNQLYSLTQLQISFGINMVALCQGQ-PKTLSLKEILKNFLSHRQEIIIRRSL 367 Query: 378 FRMQAIDRRVEILKGLLIAYL--------------NIDEIIAIIRNEDKPKPVMV----S 419 F + + R+ IL+GL +A + +ID II+ K + + Sbjct: 368 FELNKVRNRIHILEGLNMALININAIIEIIKNSVNSIDAKKIIIQKNWKSEKINYLAKKH 427 Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479 + +E Q AIL+LRL + LE+ +I E ++L+ + +++ +L + K+ + I E+ Sbjct: 428 EYYFSEKQAQAILDLRLHKITNLEQEKIIMEHNDLIKKTKELKEILENPKKMFEVIKSEL 487 Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHS 537 ++ FS +RRT E + +D + +I +E + V +S+ G+++ L ++ Sbjct: 488 LSIQNNFS-----DKRRTKITE-NHSD--INMEDLINQEDVVVTLSHSGYVKYQPLSDYN 539 Query: 538 VDL------SALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLP 576 SA KE D ++ + A+T D IL S+ G K Y LP Sbjct: 540 AQRRGGKGKSAAKIKEEDFIESLVIANTHDTILCFSSRGILYWMKVYQLP 589 >gi|281491610|ref|YP_003353590.1| DNA gyrase subunit A [Lactococcus lactis subsp. lactis KF147] gi|281375328|gb|ADA64841.1| DNA gyrase, subunit A [Lactococcus lactis subsp. lactis KF147] Length = 836 Score = 396 bits (1018), Expect = e-108, Method: Compositional matrix adjust. Identities = 266/757 (35%), Positives = 420/757 (55%), Gaps = 47/757 (6%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 ++NV V+L ++ + YA+S I RA+PD+RDG KPVHRRI++ M+E+G K Sbjct: 10 DKNVINVNLVEEMKTSFRDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGNTPDKPHK 69 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSARIVGEV+GK HPHGD S+Y+++VR+AQ + R+ L G GNFG++DGD AAA RYTE Sbjct: 70 KSARIVGEVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLADGHGNFGSMDGDGAAAMRYTE 129 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 AR++++A +L+ ++++ VDF D ++ + EP+V P++FPNLL NGT+GIAVGMAT+IP Sbjct: 130 ARLSKIAMEMLRDINKNTVDFMDNFDGTEREPLVLPARFPNLLVNGTTGIAVGMATNIPP 189 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E +A L++NPE S+ L+ I GPDFPTG +++ + I +Y G+G +R Sbjct: 190 HNLGETIDAVDMLMENPEASVTDLMSVIPGPDFPTGALVM-GKSGIRRAYETGKGSITLR 248 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312 A+ +EE+ G IVVTE+PY V K+RL+E I L KRI L +RDES E +R+V Sbjct: 249 AKTHIEEMAGGKERIVVTELPYMVNKARLVEHIVRLNHEKRIEGLTAVRDESNREGIRVV 308 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 + + R L +++ ++F L+ ++T F NM + G +P+++ L IL +++ H+ EV+ Sbjct: 309 IEVR-RDLSAHVILNNLFKLTSLQTSFGFNMLAIEKG-IPKILSLKEILVDYIEHQIEVV 366 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVD 429 RR++F + R IL+GL IA NID II IIR + M+ F L+E Q Sbjct: 367 ERRTAFDKARAEARAHILEGLRIALDNIDRIITIIRESQTDAIAQKTMMDEFLLSEKQSQ 426 Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489 AIL++RLR L LE +I++E +L+A + +L ++ I E+ EVK F+ Sbjct: 427 AILDMRLRRLTGLERDKIEAEYQDLVALIADLADILAKPERVKKIIREELEEVKRKFAD- 485 Query: 490 TDLGRRRTTFC--EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------D 539 +RRT EV + +IE+E + + +SN+G+I+ L + Sbjct: 486 ----KRRTELLVGEVL----TLEDEDLIEEEDVLITLSNKGYIKRLANDEFRAQNRGGRG 537 Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS-GR-GHGEAIQLLIDLN 597 + + + D ++ + T D +L + G+ Y + + GR G I L+ L+ Sbjct: 538 VQGMGMSDDDFVQHLVSTSTHDHLLFFTNLGRVYRMKGYEIPEYGRTAKGLPIVNLLKLD 597 Query: 598 HNQDIVTAFVY--DSTCKLLVVSSKGNAFIVEESEIIANTR-KGKTFLKVSSEEKMKLVV 654 + I T D K L +++ + +N R G LK+ +++ V+ Sbjct: 598 DGEKIATIINVDRDQAAKYLFFTTRNGIVKRTSTSQFSNIRTNGLKALKLRDGDELINVL 657 Query: 655 KVTGDHVAVVGENRKLLI-FSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712 + +G+ ++G + + F + +M R GV+ + ++G D + G + I Sbjct: 658 RTSGEDEVIIGTHLGYSVRFKGAVVRDMGRAAAGVKGVNLREG---DYVV-----GTSRI 709 Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGK 749 D + SEN LGKR KG R GK Sbjct: 710 DDSQEVLVISEN----GLGKRTQASEYPTKG--RGGK 740 >gi|114327883|ref|YP_745040.1| DNA gyrase subunit A [Granulibacter bethesdensis CGDNIH1] gi|114316057|gb|ABI62117.1| DNA gyrase subunit A [Granulibacter bethesdensis CGDNIH1] Length = 940 Score = 396 bits (1018), Expect = e-108, Method: Compositional matrix adjust. Identities = 233/592 (39%), Positives = 338/592 (57%), Gaps = 49/592 (8%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 V+L + YL YA+S I RA+PD RDG KPVHRRI++ M E G ++KSARI Sbjct: 25 VTLEEEMSRSYLDYAMSVIVSRALPDARDGLKPVHRRILYGMQESGYTADKPYRKSARIN 84 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+V+GK HPHGD ++YD+LVRLAQPF R PLI GQGNFG++DGD AAA RYTEAR+ + Sbjct: 85 GDVMGKYHPHGDAAIYDALVRLAQPFSLRVPLIDGQGNFGSMDGDPAAAPRYTEARLARS 144 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A +L +D D VDF+ Y++ + EP V P+ +PNLL NG GIAVGMAT IP+HN E+ Sbjct: 145 ASFLLNDIDRDTVDFQPNYDDSEMEPRVLPASYPNLLVNGADGIAVGMATKIPTHNPTEV 204 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 +A LA+IDNP+I++++L+ I GPDFPTGG+I+ R I ++ G+G VRAR E Sbjct: 205 IDATLAMIDNPDITLDELMTVIPGPDFPTGGLIL-GRSGIRSAFETGKGSITVRARTDFE 263 Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKNR 318 EV G IV++EIPYQV K+ L E++AEL+ AK+I + DIRDES VR+V+ K R Sbjct: 264 EVRGGRQAIVISEIPYQVNKATLQERMAELVRAKQIEGISDIRDESDRSGVRVVIELK-R 322 Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378 PD+++ +F + ++ + +NM L G+ P++M L +L ++ R +V+ RR+ F Sbjct: 323 DATPDVVLNHLFRFTQLQISYGINMLALDGGQ-PRLMGLRDVLSTFIRFREDVILRRARF 381 Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE-------------DKP----KPVMV--- 418 + R +L GL IA NIDE+I +IR D P P++ Sbjct: 382 ELNKARDRAHLLVGLAIAVANIDEVIRLIRQSPDSTSARIALMERDWPAADVAPLLTLID 441 Query: 419 ---------SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGK 469 LTE Q IL LRL+ L LE +I +E+ + A ++ ++ S Sbjct: 442 DGGNVLTEAQTVRLTEVQARGILELRLQRLTGLERDKIHNEMQEVAARIGELLEIIGSHI 501 Query: 470 QQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW 529 ++ + E+ ++ +L R + S AD+ +++IE + V I+ G+ Sbjct: 502 RRMEVMREELAVIR------AELNSPRRSEINDSLADQD--DESLIEPGQMVVTITRDGF 553 Query: 530 I--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573 I R +A + D + + +AHT +L S+ GKAY Sbjct: 554 IKRTPLDVFRQQHRGGRGRAAASMRGDDIVTRSFNAHTHQWVLFFSSGGKAY 605 >gi|319640978|ref|ZP_07995686.1| A subunit [Bacteroides sp. 3_1_40A] gi|317387423|gb|EFV68294.1| A subunit [Bacteroides sp. 3_1_40A] Length = 855 Score = 396 bits (1018), Expect = e-108, Method: Compositional matrix adjust. Identities = 253/769 (32%), Positives = 422/769 (54%), Gaps = 41/769 (5%) Query: 12 LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71 L ++ + +++ ++ Y+ Y++S I RA+PD+RDGFKPVHRRI++ M E+G A Sbjct: 2 LEQDRIIKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMIELGNTSDKA 61 Query: 72 FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131 +KKSARIVGEV+GK HPHGD SVY +LVR+AQ + RYPL+ GQGNFG++DGDS AA RY Sbjct: 62 YKKSARIVGEVLGKYHPHGDFSVYGALVRMAQDWAMRYPLVDGQGNFGSVDGDSPAAMRY 121 Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191 TEAR+ ++ E ++Q + ++ VDF++ +++ EP V P++ PNLL NG SGIAVGMAT++ Sbjct: 122 TEARLKKIGEEMMQDLYKETVDFQNNFDDTLQEPTVMPTRIPNLLVNGASGIAVGMATNM 181 Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251 P+HN+ E+ +A +A IDN +I IE L++Y+ PDFPTGG I + ++Y GRG Sbjct: 182 PTHNLSEVIDACIAYIDNNDIDIEGLMQYVKAPDFPTGGYIY-GISGVRDAYETGRGRVV 240 Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVR 310 +RA+ + E I+V EIPY V K LIE IA L+ K+I + + DES E +R Sbjct: 241 MRAKAEI-ETHTTHDKIIVNEIPYNVNKKELIENIASLVNDKKIDGISYVNDESDREGMR 299 Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370 IV+ K R + +++ +F ++ ++T F +N L GR P+++ L +++ ++ HR + Sbjct: 300 IVIDVK-RDANASVVLNKLFKMTALQTSFGVNNIALVHGR-PKMLNLKDLIRYFVEHRHD 357 Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQ 427 V+ RR+ + ++ R IL+GL+IA NIDE+I IIR P ++ RF+L+E Q Sbjct: 358 VVIRRTQYDLRKAQERAHILEGLIIASDNIDEVIRIIRAAKTPNDAIAGLIERFNLSEIQ 417 Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487 AI+ +RLR L L + Q+ +E + ++ + + +L++ + I E+ EVKE + Sbjct: 418 ARAIVEMRLRQLTGLMQDQLHAEYEEVMKQIAYYEEILSNDELCKKVIKDELVEVKEKYG 477 Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVD 539 + RR+ E+ + + + + + + IS+ G+I R+ V Sbjct: 478 DA-----RRS---EIVYSSEEFNPEDFYADDQMVITISHMGYIKRTPLSEFRAQNRGGVG 529 Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLN 597 ++ D ++ A + ++ + GK Y L + G G AIQ L++++ Sbjct: 530 SKGSETRDEDFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTKNAKGRAIQNLLNID 589 Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANT---------RKGKTFLKVSSEE 648 + D+VTA++ + ++ +I T + G + + ++ Sbjct: 590 SD-DVVTAYLRVKNLNDTEFINSHYVLFCTKNGVIKKTLLEQYSRPRQNGVNAITIREDD 648 Query: 649 KMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSY-KDGG--ISDVICF 703 K+ V GD+ + + N + + F + M R GVR + +DGG + +IC Sbjct: 649 KVIEVRMTNGDNEIIIANRNGRAIRFHESAVRVMGRTATGVRGMTLDEDGGDEVIGMICI 708 Query: 704 KICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752 K E + + + + Y + + RGG G ++GK ++ Sbjct: 709 KDPEAESIMVVSEQGYGKRSDIEDYRKTNRGGKGVKTLNITDKTGKLVA 757 >gi|114776320|ref|ZP_01451365.1| DNA gyrase, A subunit [Mariprofundus ferrooxydans PV-1] gi|114553150|gb|EAU55548.1| DNA gyrase, A subunit [Mariprofundus ferrooxydans PV-1] Length = 853 Score = 396 bits (1018), Expect = e-108, Method: Compositional matrix adjust. Identities = 231/580 (39%), Positives = 348/580 (60%), Gaps = 32/580 (5%) Query: 26 LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85 ++ YL YA+S I RA+PD RDG KPVHRRI+ AM ++G F FKKSAR+VG+VIGK Sbjct: 17 MKRSYLDYAMSVIVGRALPDARDGLKPVHRRILFAMQDLGSTFDKPFKKSARVVGDVIGK 76 Query: 86 LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145 HPHGD +VYD+LVR+AQP+ R+ L+ GQGNFG++DGDS AA RYTEARM+++A +L Sbjct: 77 YHPHGDSAVYDALVRMAQPWSMRHVLVDGQGNFGSVDGDSPAAMRYTEARMSRLAGELLA 136 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 +D+D VDF Y+E EP V P+++PNLL NG+ GIAVGMAT+IP HN+ E A +A Sbjct: 137 DIDKDTVDFGPNYDESMREPKVLPARYPNLLINGSQGIAVGMATNIPPHNLAETINATIA 196 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265 L++NPEI ++L++ + GPDFPTGG I R I ++ GRG +RAR VE R Sbjct: 197 LVNNPEIDDDELMQIMPGPDFPTGGFIY-GRSGIRSAFMTGRGSVTMRARAIVEVNPRTH 255 Query: 266 -WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKNRSLDPD 323 +++TE+PYQV K+ LIE IA + K++ + D+RDES D +RI + K + P+ Sbjct: 256 RQSLIITELPYQVNKANLIENIAHQVRDKKLEGITDLRDESDRDGMRIAIELKKNEI-PE 314 Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383 +++ +++ + ++ F N+ L G+ P++ + +L +L HRR+V+ RR F + Sbjct: 315 VVLNNLYKHTQLQCNFGCNLLALLDGQ-PKLCGVRELLLHFLDHRRQVVTRRCLFDLAKA 373 Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAILNLRLRSLR 440 + R IL+GLLIA IDE+I +IR + K ++ F L++ Q AIL++RL+ L Sbjct: 374 EARAHILEGLLIALDRIDEVIKLIRASQTGAEAKAGLMEHFGLSDLQAQAILDMRLQRLT 433 Query: 441 KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500 LE +IK+E + + + ++L K N I E+ V++ ++ RR+ Sbjct: 434 GLERDKIKAEYEEIQRLITHLKAILADEKLLMNVIVEEMEAVRDRYADP-----RRSEIM 488 Query: 501 EVSRADKATLQ-QAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSL 551 + + A L + +I +E + V ISN G+I R+ + +A+ K+ D + Sbjct: 489 D----ETAELSVEDLITEEDMVVTISNEGYIKRNATSLYRAQRRGGQGKTAMTTKDEDFV 544 Query: 552 KIALHAHTTDRILLLSTDG-----KAYTLP-AGNLLSGRG 585 + A T D +L S G K Y +P AG+ G+ Sbjct: 545 AQLMVASTHDYLLFFSDQGRVFRKKVYEVPQAGSTARGKA 584 >gi|15835079|ref|NP_296838.1| DNA gyrase subunit A [Chlamydia muridarum Nigg] gi|270285246|ref|ZP_06194640.1| DNA gyrase subunit A [Chlamydia muridarum Nigg] gi|270289265|ref|ZP_06195567.1| DNA gyrase subunit A [Chlamydia muridarum Weiss] gi|301336642|ref|ZP_07224844.1| DNA gyrase subunit A [Chlamydia muridarum MopnTet14] gi|13627142|sp|Q9PKK4|GYRA_CHLMU RecName: Full=DNA gyrase subunit A gi|7190504|gb|AAF39312.1| DNA gyrase, subunit A [Chlamydia muridarum Nigg] Length = 833 Score = 396 bits (1017), Expect = e-108, Method: Compositional matrix adjust. Identities = 256/704 (36%), Positives = 393/704 (55%), Gaps = 33/704 (4%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 EE + +L ++E YL Y++S I RA+PD+RDG KP RRI++AM ++ L GA + Sbjct: 5 EEIIVPKNLEEEMKESYLRYSMSVIISRALPDVRDGLKPSQRRILYAMKQLNLTPGAKHR 64 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 K A+I G+ G HPHG+ +Y +LVR+AQ + RYPL+ GQGNFG+IDGD AAA RYTE Sbjct: 65 KCAKICGDTSGDYHPHGEAVIYPTLVRMAQDWAMRYPLVDGQGNFGSIDGDPAAAMRYTE 124 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 AR+T + +L+ +D+D VD Y+E EPVVFPSKFPNLL NG+SGIAVGMAT+IP Sbjct: 125 ARLTHSSIFLLEDLDKDTVDMVPNYDETKYEPVVFPSKFPNLLCNGSSGIAVGMATNIPP 184 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E+ EA L ++ NP+ SIE++LE + GPDFPTGGII + E I +Y GRG R+R Sbjct: 185 HNLGELIEATLLVLANPQTSIEEILEVMPGPDFPTGGIICGT-EGIRSTYYTGRGKLRLR 243 Query: 254 ARWCVEE-VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRI 311 AR VEE + I++TE+PY V KSRL+E+IAELI K + + D+RDES +D +R+ Sbjct: 244 ARIHVEENSDKQRENIILTEMPYNVNKSRLVEQIAELINEKTLTGISDVRDESDKDGIRV 303 Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371 VL K + ++++ ++ +D++ F NM L +P+ M + ++ W+ HR +V Sbjct: 304 VLELK-KGESSEVIINRLYKFTDVQVTFGANMLALDKN-LPRTMSIHRMISAWIRHRMDV 361 Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQV 428 + RR+ + + + R IL+G L A +DE++ IR N++ K +V F +E Q Sbjct: 362 IRRRTRYELNKAETRAHILEGFLKALSCMDEVVKTIRESSNKEHAKQQLVELFGFSEAQS 421 Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488 AIL LRL L LE +++ E + LL + +L + + I E++E+ ++ Sbjct: 422 LAILELRLYQLTGLEIDKVQKEYNELLEKIAYYRRVLAEEELVKDIIREELQELHKVHKT 481 Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSVDL 540 RRTT E+ D ++ +I E + + IS +++ + K + Sbjct: 482 P-----RRTTI-EMDAGDVRDIED-IIADESVIITISGDDYVKRMPVKVFREQKRGGQGV 534 Query: 541 SALHFKEG-DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLN 597 + K+G D LK A T D +L+ + G+ Y L L G R G+ I ++ Sbjct: 535 TGFDMKKGSDFLKAVYSASTKDYLLIFTNMGQCYWLKVWQLPEGERRAKGKPIINFLEGI 594 Query: 598 HNQDIVTAFV----YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653 + V A + ++ LL+ + KG V + +KG L++ +++ Sbjct: 595 RPGEQVAAVLNVKRFEQGEYLLLATKKGVVKKVSLDAFGSPRKKGIRALEIDDGDELIAA 654 Query: 654 VKVTGDHVAVVGENR--KLLIFSIDQIPEMSR-GKGVRLQSYKD 694 + D V+ R + F D++ M R +GVR S K+ Sbjct: 655 RHIVNDEEKVMLFTRLGMAVRFPHDKVRPMGRAARGVRGVSLKN 698 >gi|226952085|ref|ZP_03822549.1| DNA gyrase [Acinetobacter sp. ATCC 27244] gi|226837177|gb|EEH69560.1| DNA gyrase [Acinetobacter sp. ATCC 27244] Length = 909 Score = 396 bits (1017), Expect = e-108, Method: Compositional matrix adjust. Identities = 225/613 (36%), Positives = 354/613 (57%), Gaps = 67/613 (10%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 ++ +++ L+ YL YA+S I RA+PD+RDG KPVHRR++ AM E+G D+ A+KKSA Sbjct: 6 IRPIAIEDELKHSYLDYAMSVIVSRALPDVRDGLKPVHRRVLFAMHELGNDYNKAYKKSA 65 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD +VY+++VR+AQ F RY L+ GQGNFG++DGDSAAA RYTE RM Sbjct: 66 RVVGDVIGKYHPHGDSAVYETIVRMAQDFSLRYMLVDGQGNFGSVDGDSAAAMRYTEVRM 125 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 ++ IL +++D VD+ D Y+ + P V P++ PNLL NGT+GIAVGMAT++ HN+ Sbjct: 126 QKLTHEILADLEKDTVDWEDNYDGSERIPQVMPTRIPNLLINGTTGIAVGMATNMAPHNM 185 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ A LA +NP IS+E L+E+I GPDFPTGGII + IV++YR G+G +R ++ Sbjct: 186 TEVVNACLAYANNPNISVEGLMEHITGPDFPTGGIIY-GKSGIVDAYRTGKGRLHIRGKY 244 Query: 257 CVEEVGR-GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLF 314 EE + G IV TEIPYQV K++ IE+IAEL+ K++ + ++RDES E +RI + Sbjct: 245 HFEEDQKTGRTTIVFTEIPYQVNKAKTIERIAELVKEKKLEGISELRDESDKEGMRIAID 304 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K R + ++++ ++F+ + ++ F +NM L G+ P++M L I+ ++ HR+EV+ R Sbjct: 305 LK-RGENAEVIVNNLFLHTQLQNSFSINMVCLDNGQ-PKLMNLKDIIAAFIRHRQEVVTR 362 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN------------------------- 409 R+ + ++ R IL+GL +A NID II I+ Sbjct: 363 RTMYELRKARERGHILEGLTVALANIDAIIETIKTSANPSEARERLQAGEWAGGGVVALL 422 Query: 410 ---------------EDKPKPVMVSR--FSLTENQVDAILNLRLRSLRKLEEYQIKSELD 452 ED +P +S + L+ QV+AIL LRL L LE+ ++ +E Sbjct: 423 EKAGAISVRPDEIEGEDPARPFGLSGDIYRLSPTQVNAILELRLHRLTGLEQDKLHAEYT 482 Query: 453 NLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF--SKSTDLGRRRTTFCEVSRADKATL 510 +L + ++ ++LN N I E+ + + + ++ T++ FC Sbjct: 483 EILGQIAELTAILNDFNLLMNVIREELALILQQYGDARRTEIVESGVDFC---------- 532 Query: 511 QQAMIEKEPITVVISNRGWIRS--LKSHSVDL------SALHFKEGDSLKIALHAHTTDR 562 ++ +I +E + + +S G+ ++ L + SA K+ D ++ + A Sbjct: 533 REDLIPEEQVVLTVSQTGYAKTQPLSDYQAQRRGGRGKSATSMKDDDIIQHLIVASNHAT 592 Query: 563 ILLLSTDGKAYTL 575 +L + GK Y L Sbjct: 593 VLCFTNVGKVYRL 605 >gi|56416621|ref|YP_153695.1| DNA gyrase subunit A [Anaplasma marginale str. St. Maries] gi|56387853|gb|AAV86440.1| DNA gyrase subunit A [Anaplasma marginale str. St. Maries] Length = 908 Score = 396 bits (1017), Expect = e-108, Method: Compositional matrix adjust. Identities = 229/602 (38%), Positives = 342/602 (56%), Gaps = 59/602 (9%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 V VS+ LE YL+YA+S I RAIPD+RDG KPVHRRI+++M + G D +KK+A Sbjct: 11 VLPVSIEQELESSYLSYAMSVIVSRAIPDIRDGLKPVHRRILYSMYKSGYDHNKPYKKAA 70 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+V+G+ HPH D ++YD+LVR+AQ F PLI QGNFG+IDGD A+ RYTEAR+ Sbjct: 71 RVVGDVMGRYHPHADTAIYDALVRMAQDFSLLVPLIDSQGNFGSIDGDPPASMRYTEARL 130 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 ++ A +L +DED VDFR Y+E + EPV+ P++FPNLL NG G+AVGM+T+IPSHN+ Sbjct: 131 SEAAHFLLNDIDEDTVDFRPNYDENEEEPVILPAEFPNLLVNGAGGVAVGMSTNIPSHNL 190 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ +A +A I+ PEI++++L+ I GPDFPTGG+I+ I ++ GRG VR R Sbjct: 191 GEVVDACVAYIERPEITLDELMTIIPGPDFPTGGVIM-GDAGIRSAFASGRGTIVVRGRT 249 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316 EE+ G I++ EIPYQV K++L+E+I EL+ K+I + D+RDES + V Sbjct: 250 HTEELPSGRQAIIIDEIPYQVNKAKLVERIHELVKEKKIEGVADLRDESNKSGVRVAIEL 309 Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376 R +D +++ + L+ + T F +N VL + P+VM L I+ ++ R+EV+ RR+ Sbjct: 310 KRQVDSQVVLNQLLGLTPLRTSFSINTLVLENNK-PRVMSLPEIIATFVDFRKEVIVRRT 368 Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN--------------------------- 409 FR++ I + + G+ IA LNIDE+++II++ Sbjct: 369 RFRLKKIREKAHLYIGMYIAVLNIDEVVSIIKSSKDSAEASAALRERRWAPSVDIRNMIE 428 Query: 410 --EDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLA---EKEKI--- 461 D V + LT QV AIL +RL+ L LE+ ++++EL++++A E KI Sbjct: 429 LVSDSTGVVEGGMYQLTVPQVKAILEMRLQRLTGLEKDKLEAELESMVALITEYTKILST 488 Query: 462 DSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPIT 521 DSLL +Q + L + R T E S D+ +++I KE + Sbjct: 489 DSLLMDIVKQG------------LLDAKAKLAKPRNTAIEQS-VDEID-AESLIPKEEMV 534 Query: 522 VVISNRGWIRSLKSHSVDLS--------ALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573 V ++ G+++ +K + A KE D T +L S GK Y Sbjct: 535 VTVTMNGFVKRVKLSNYRAQKRGGKGRVAQGIKEEDVTTKLFVVDTHTSVLFFSNVGKVY 594 Query: 574 TL 575 L Sbjct: 595 KL 596 >gi|156888525|gb|ABU96667.1| DNA gyrase subunit A [Streptococcus dysgalactiae subsp. equisimilis] Length = 834 Score = 396 bits (1017), Expect = e-108, Method: Compositional matrix adjust. Identities = 224/580 (38%), Positives = 355/580 (61%), Gaps = 26/580 (4%) Query: 12 LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71 + + N+ V+L ++ ++ YA+S I RA+PD+RDG KPVHRRI++ M+E+G+ Sbjct: 1 MQDRNLIDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVMPDKP 60 Query: 72 FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131 KKSARI G+V+GK HPHGD S+Y+++VR+AQ + R+ L+ G GNFG++DGD AAA RY Sbjct: 61 HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRY 120 Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191 TEARM+++A +L+ ++++ VDF+D Y+ + EP+V P++FPNLL NG +GIAVGMAT+I Sbjct: 121 TEARMSKIALELLRDINKNTVDFQDNYDGSEREPLVLPARFPNLLVNGATGIAVGMATNI 180 Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251 P HN+ E +A +++NP+ + L+E I GPDFPTG +++ R I +Y G+G Sbjct: 181 PPHNLAESIDAVKMVMENPDCTTRDLMEVIPGPDFPTGALVM-GRSGIHRAYDTGKGSIV 239 Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVR 310 +R+R +E G IVVTE PY V K+++ E I L KRI + +RDES+ E VR Sbjct: 240 LRSRTEIETTKTGRERIVVTEFPYGVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGVR 299 Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370 V+ + R ++++ ++F L+ ++T F NM + G VP+++ L I+ +++H++E Sbjct: 300 FVIEIR-RDASANVILNNLFKLTSLQTNFSFNMLAIENG-VPKILSLRQIIDNYISHQKE 357 Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQ 427 V+ RR+ F + R IL+GLLIA ++DE+IAIIRN + + ++SRF+L+E Q Sbjct: 358 VITRRTQFDKNKAEARAHILEGLLIALDHLDEVIAIIRNSETDVIAQAELMSRFNLSERQ 417 Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487 AIL++RLR L LE +I+SE D LLA + +L ++ I E+ E+K ++ Sbjct: 418 SQAILDMRLRRLTGLERDKIQSEYDELLALIADLADILAKPERVVTIIKEEMDEIKRKYA 477 Query: 488 KSTDLGRRRTTFC--EVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHS 537 RRT EV + + +IE+E + + +SN+G+I+ L K Sbjct: 478 NP-----RRTELMIGEVL----SLEDEDLIEEEDVLITLSNKGYIKRLAQDEFRAQKRGG 528 Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPA 577 + + D ++ + T D +L + G+ Y L A Sbjct: 529 RGVQGTGVNDDDFVRELVSTSTHDTLLFFTNFGRVYRLKA 568 >gi|15673093|ref|NP_267267.1| DNA gyrase subunit A [Lactococcus lactis subsp. lactis Il1403] gi|12724070|gb|AAK05209.1|AE006343_5 DNA gyrase subunit A [Lactococcus lactis subsp. lactis Il1403] Length = 829 Score = 396 bits (1017), Expect = e-108, Method: Compositional matrix adjust. Identities = 266/757 (35%), Positives = 420/757 (55%), Gaps = 47/757 (6%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 ++NV V+L ++ + YA+S I RA+PD+RDG KPVHRRI++ M+E+G K Sbjct: 3 DKNVINVNLVEEMKTSFRDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGNTPDKPHK 62 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSARIVGEV+GK HPHGD S+Y+++VR+AQ + R+ L G GNFG++DGD AAA RYTE Sbjct: 63 KSARIVGEVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLADGHGNFGSMDGDGAAAMRYTE 122 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 AR++++A +L+ ++++ VDF D ++ + EP+V P++FPNLL NGT+GIAVGMAT+IP Sbjct: 123 ARLSKIAMEMLRDINKNTVDFMDNFDGTEREPLVLPARFPNLLVNGTTGIAVGMATNIPP 182 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E +A L++NPE S+ L+ I GPDFPTG +++ + I +Y G+G +R Sbjct: 183 HNLGETIDAVDMLMENPEASVTDLMSVIPGPDFPTGALVM-GKSGIRRAYETGKGSITLR 241 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312 A+ +EE+ G IVVTE+PY V K+RL+E I L KRI L +RDES E +R+V Sbjct: 242 AKTHIEEMAGGKERIVVTELPYMVNKARLVEHIVRLNHEKRIEGLTAVRDESNREGIRVV 301 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 + + R L +++ ++F L+ ++T F NM + G +P+++ L IL +++ H+ EV+ Sbjct: 302 IEVR-RDLSAHVILNNLFKLTSLQTSFGFNMLAIEKG-IPKILSLKEILVDYIEHQIEVV 359 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVD 429 RR++F + R IL+GL IA NID II IIR + M+ F L+E Q Sbjct: 360 ERRTAFDKARAEARAHILEGLRIALDNIDRIITIIRESQTDAIAQKTMMDEFLLSEKQSQ 419 Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489 AIL++RLR L LE +I++E +L+A + +L ++ I E+ EVK F+ Sbjct: 420 AILDMRLRRLTGLERDKIEAEYQDLVALIADLADILAKPERVKKIIREELEEVKRKFAD- 478 Query: 490 TDLGRRRTTFC--EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------D 539 +RRT EV + +IE+E + + +SN+G+I+ L + Sbjct: 479 ----KRRTELLVGEVL----TLEDEDLIEEEDVLITLSNKGYIKRLANDEFRAQNRGGRG 530 Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS-GR-GHGEAIQLLIDLN 597 + + + D ++ + T D +L + G+ Y + + GR G I L+ L+ Sbjct: 531 VQGMGMSDDDFVQHLVSTSTHDHLLFFTNLGRVYRMKGYEIPEYGRTAKGLPIVNLLKLD 590 Query: 598 HNQDIVTAFVY--DSTCKLLVVSSKGNAFIVEESEIIANTR-KGKTFLKVSSEEKMKLVV 654 + I T D K L +++ + +N R G LK+ +++ V+ Sbjct: 591 DGEKIATIINVDRDQAAKYLFFTTRNGIVKRTSTSQFSNIRTNGLKALKLRDGDELINVL 650 Query: 655 KVTGDHVAVVGENRKLLI-FSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712 + +G+ ++G + + F + +M R GV+ + ++G D + G + I Sbjct: 651 RTSGEDEVIIGTHLGYSVRFKGAVVRDMGRAAAGVKGVNLREG---DYVV-----GTSRI 702 Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGK 749 D + SEN LGKR KG R GK Sbjct: 703 DDSQEVLVISEN----GLGKRTQASEYPTKG--RGGK 733 >gi|300112890|ref|YP_003759465.1| DNA gyrase subunit A [Nitrosococcus watsonii C-113] gi|299538827|gb|ADJ27144.1| DNA gyrase, A subunit [Nitrosococcus watsonii C-113] Length = 846 Score = 396 bits (1017), Expect = e-108, Method: Compositional matrix adjust. Identities = 239/621 (38%), Positives = 357/621 (57%), Gaps = 61/621 (9%) Query: 13 VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72 + + V V++ ++ YL YA+S I RA+PD RDG KPVHRR+++AM E+G D+ + Sbjct: 4 IAQEVFPVNIEDEMKHSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMRELGNDWNKPY 63 Query: 73 KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132 KKSAR+VG+VIGK HPHGD +VYD++VR+AQ F R PLI GQGNFG+IDGDS AA RYT Sbjct: 64 KKSARVVGDVIGKYHPHGDAAVYDAIVRMAQLFSMRCPLIDGQGNFGSIDGDSPAAMRYT 123 Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192 E RM ++A +L ++++ VDF Y+E + EP V P++ PNLLANG+SGIAVGMAT+IP Sbjct: 124 EVRMAKIAHELLADLNKETVDFVPNYDESEHEPAVLPARIPNLLANGSSGIAVGMATNIP 183 Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252 HN+ E+ A +ALID+P +SI L+ +I GPDFPT GI+ R I E+Y GRG + Sbjct: 184 PHNLGELLNACIALIDDPALSIAGLMAHIPGPDFPTAGIVNGIR-GIQEAYLTGRGRIVM 242 Query: 253 RARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311 RAR VE + G G I+VTE+PY V K+RL+EKI L+ K+I + +RDES +D Sbjct: 243 RARTHVETDEGSGKQSIIVTELPYMVNKARLLEKIGNLVKDKKIVGIVGLRDESDKDGMR 302 Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371 ++ RS P++++ +++ + +++ F +NM L G+ PQ++ L L+ +L HR+EV Sbjct: 303 MVVELRRSEMPEVVLNQLYLHTQLQSVFGINMVALVDGQ-PQLLNLKLALEVFLRHRQEV 361 Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRF------- 421 + RR+ F ++ R +L+GL IA NID +IA+I+ P +++RF Sbjct: 362 VTRRTMFELRKARERAHVLEGLAIALTNIDSMIALIKASSSPAEARDGLIARFWPPGVVI 421 Query: 422 ---------------------------SLTENQVDAILNLRLRSLRKLEEYQIKSELDNL 454 L+ Q AIL +RL L LE+ +I E + + Sbjct: 422 DMLQRAGAASSPPEELEAAYGLQRDGYRLSPAQAQAILEMRLHRLTGLEQSKIIDEYEQV 481 Query: 455 LAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAM 514 + ++ +L + ++ I E+ E+ E +S RRT E+ + + Sbjct: 482 IIFISELLEILANPERLMAVIREELMEMLEQYSAP-----RRT---EIQDNYVDLRLEDL 533 Query: 515 IEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLL 566 I++E + V +S+ G+ RS K SA KE D + A+T D +L Sbjct: 534 IQEENVVVTLSHSGYAKSQTLDTYRSQKRGGKGKSATAMKEEDFIDKLFIANTHDTLLCF 593 Query: 567 STDG-----KAYTLPAGNLLS 582 S+ G K Y LP G+ ++ Sbjct: 594 SSRGKVYWKKVYELPQGSRIA 614 >gi|298385664|ref|ZP_06995222.1| DNA gyrase, A subunit [Bacteroides sp. 1_1_14] gi|298261805|gb|EFI04671.1| DNA gyrase, A subunit [Bacteroides sp. 1_1_14] Length = 858 Score = 396 bits (1017), Expect = e-108, Method: Compositional matrix adjust. Identities = 260/777 (33%), Positives = 416/777 (53%), Gaps = 57/777 (7%) Query: 12 LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71 L ++ + +++ ++ Y+ Y++S I RA+PD+RDGFKPVHRRI++ M E+G Sbjct: 2 LEQDRIIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILYGMMELGNTSDKP 61 Query: 72 FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131 +KKSARIVGEV+GK HPHGD SVY ++VR+AQ + RYPL+ GQGNFG++DGDS AA RY Sbjct: 62 YKKSARIVGEVLGKYHPHGDSSVYYAMVRMAQEWAMRYPLVDGQGNFGSVDGDSPAAMRY 121 Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191 TEAR+ ++ E ++ + ++ VDF ++ +EP V P++ PNLL NG SGIAVGMAT++ Sbjct: 122 TEARLNKLGEAMMDDLYKETVDFEPNFDNTLTEPKVMPTRIPNLLVNGASGIAVGMATNM 181 Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251 P HN+ E+ +A A IDN EI++E+L+ Y+ PDFPTGG I + E Y GRG Sbjct: 182 PPHNLSEVIDACEAYIDNQEITVEELMTYVKAPDFPTGGYIY-GISGVREGYLTGRGRVV 240 Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VR 310 +RA+ + E G+ IVVTEIPY V K+ LI+ IA+L+ KRI + + DES D +R Sbjct: 241 MRAKAEI-ETGQTHDKIVVTEIPYNVNKAELIKYIADLVNDKRIEGISNANDESDRDGMR 299 Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370 IV+ K R + +++ ++ ++ ++T F +N L GR P+ + L ++K ++ HR E Sbjct: 300 IVIDVK-RDANASVVLNKLYKMTALQTSFGVNNVALVHGR-PKTLNLRDMIKYFVEHRHE 357 Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQ 427 V+ RR+ F ++ R IL+GL+IA NIDE+I IIR P ++ RF+LTE Q Sbjct: 358 VVIRRTQFDLRKAKERAHILEGLIIASDNIDEVIRIIRAAKTPNDAIAGLIERFNLTEIQ 417 Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487 AI+ +RLR L L + Q+ +E + ++ + ++S+L + + E+ EVK + Sbjct: 418 SRAIVEMRLRQLTGLMQDQLHAEYEEIMKQIAYLESILADDEVCRKVMKDELLEVKAKYG 477 Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVD 539 RR+ E+ + + + + + + IS+ G+I R+ V Sbjct: 478 DE-----RRS---EIVYSSEEFNPEDFYADDQMIITISHMGYIKRTPLTEFRAQNRGGVG 529 Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLN 597 ++ D ++ A + ++ + GK Y L + G G AIQ L++++ Sbjct: 530 SKGTETRDADFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTKNSKGRAIQNLLNID 589 Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG---KTFLKVSSEEKMKLVV 654 + D VTA+ L V S + + ++ T+KG KT L+ S + V Sbjct: 590 SD-DSVTAY--------LRVKSLDDTEYINSHYVLFCTKKGVIKKTLLEQYSRPRQNGVN 640 Query: 655 KVT---------------GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGIS 698 +T + + + N + + F + M R GVR + + G Sbjct: 641 AITIREDDSVIEVRMTNGNNEIIIANRNGRAIRFHEAAVRVMGRTATGVRGITLDNDGQD 700 Query: 699 DV---ICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752 +V IC K E + + + + Y + RGG G ++GK ++ Sbjct: 701 EVIGMICIKDLETESVMVVSEQGYGKRSEIEDYRKTNRGGKGVKTMNITEKTGKLVT 757 >gi|308234054|ref|ZP_07664791.1| DNA gyrase, A subunit [Atopobium vaginae DSM 15829] gi|328943451|ref|ZP_08240916.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Atopobium vaginae DSM 15829] gi|327491420|gb|EGF23194.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Atopobium vaginae DSM 15829] Length = 945 Score = 396 bits (1017), Expect = e-108, Method: Compositional matrix adjust. Identities = 253/744 (34%), Positives = 414/744 (55%), Gaps = 37/744 (4%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 +K L ++ +L Y++S I RA+PD+RDG KPVHRRI++AM+E + KKSA Sbjct: 97 LKPTDLSSEMKASFLEYSMSVIVARALPDVRDGLKPVHRRILYAMNEAHIVPTRPHKKSA 156 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 VGEV+GK HPHGD S+YD++VR+AQ F R PL+ G GNFG+IDGD AA RYTE+R+ Sbjct: 157 WTVGEVMGKYHPHGDSSIYDAMVRMAQEFSMRLPLVDGHGNFGSIDGDPPAAMRYTESRL 216 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 T A +L+ +D++ VD + Y+E EP V P++FPNLL NG++GIAVGMAT++P HN+ Sbjct: 217 THAAMQMLRDLDKETVDLQPNYDESLQEPSVLPARFPNLLVNGSNGIAVGMATNVPPHNL 276 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ A +IDNP+ ++E L++ + GPDFPTGGII+ + + I ++Y GRG +R++ Sbjct: 277 AEVSRAVCMMIDNPDATVEDLMQVLPGPDFPTGGIIMGT-DGIRDAYTTGRGSITIRSKV 335 Query: 257 CVEEVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLF 314 VE VGRG +V+TEIPYQV K L E+IA+ + KRI + D+RDES + +RIV+ Sbjct: 336 HVENVGRGGRQRLVITEIPYQVNKGLLQERIAQQVNEKRIEGISDMRDESNRKGMRIVID 395 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K+ ++ P +++ +++ + ++ F + +++ + VP+ + L ++ ++ H+++++ R Sbjct: 396 LKSGAV-PQVVLNNLYKRTQLQVSFGV-IDLALVDGVPRTLTLREMIYYYIEHQKDIVTR 453 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAI 431 R+ F + +RV IL+GLLIA NIDE++ IIR ++ + K M RF + + Q +AI Sbjct: 454 RTQFDLDKALKRVHILEGLLIAVDNIDEVVHIIRSSHDDQEAKQRMNERFGIDDIQGEAI 513 Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491 L +RLR L L ++ +++ L E LL ++ I E+ E+ FS Sbjct: 514 LQMRLRRLTGLAREELAAQIAELYKSIEYYRDLLAHPQKLLEVIKEELTEISTRFSD--- 570 Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSVDLSAL 543 +RRT + + + +I +E + + +++ +I+ L K + L Sbjct: 571 --KRRTQISALGVQNLDI--EDLIAEEDMVITVTHASYIKRLPVATYKSQKRGGKGVQGL 626 Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQ- 600 K+ D ++ A T D +L + GK Y L L G H G A+ ++ L+ + Sbjct: 627 SLKDNDFVENMFVASTHDYVLFFTNKGKVYRLKVHELPVGSRHARGSALINVLPLSEGEY 686 Query: 601 --DIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT- 657 ++T + + L+ + G S+ + R G + + +++ V +V Sbjct: 687 PTAVITTRDFPAEEHLMFATKSGMVKKTAMSDYDKSRRDGLIAINLKDGDELVNVRRVKE 746 Query: 658 GDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVICFKICEG---LTWID 713 ++V + K ++F I RG GVR + KDG ++ +I G L + Sbjct: 747 SEYVILCSSAGKAIMFEESDIRPTGRGTSGVRGITLKDGAT--MLGMEISNGKGDLLVVT 804 Query: 714 SAGRSYNRSENDLLGWLGKRGGVG 737 G Y + L KRGG+G Sbjct: 805 EHG--YGKRTPVSEYPLQKRGGLG 826 >gi|125624259|ref|YP_001032742.1| DNA gyrase subunit A [Lactococcus lactis subsp. cremoris MG1363] gi|124493067|emb|CAL98031.1| DNA gyrase subunit A [Lactococcus lactis subsp. cremoris MG1363] Length = 836 Score = 396 bits (1017), Expect = e-108, Method: Compositional matrix adjust. Identities = 244/671 (36%), Positives = 387/671 (57%), Gaps = 31/671 (4%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 ++NV V+L ++ + YA+S I RA+PD+RDG KPVHRRI++ M+E+G K Sbjct: 10 DKNVINVNLVEEMKTSFRDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGNTPDKPHK 69 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSARIVGEV+GK HPHGD S+Y+++VR+AQ + R+ L G GNFG++DGD AAA RYTE Sbjct: 70 KSARIVGEVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLADGHGNFGSMDGDGAAAMRYTE 129 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 AR++++A +L+ ++++ VDF D ++ + EP+V P++FPNLL NGT+GIAVGMAT+IP Sbjct: 130 ARLSKIAMEMLRDINKNTVDFMDNFDGTEREPLVLPARFPNLLVNGTTGIAVGMATNIPP 189 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E +A L++NPE S+ L+ I GPDFPTG +++ + I +Y G+G +R Sbjct: 190 HNLGETIDAVDMLMENPEASVTDLMSVIPGPDFPTGALVM-GKSGIRRAYETGKGSITLR 248 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312 A+ +EE+ G IVVTE+PY V K+RL+E I L KRI L +RDES E +R+V Sbjct: 249 AKTHIEEMAGGKERIVVTELPYMVNKARLVEHIVRLNHEKRIEGLTAVRDESNREGIRVV 308 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 + + R L +++ ++F L+ ++T F NM + G +P+++ L IL +++ H+ EV+ Sbjct: 309 IEVR-RDLSAHVILNNLFKLTSLQTSFGFNMLAIEKG-IPKILSLKEILVDYIEHQIEVV 366 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVD 429 RR++F + R IL+GL IA NID II IIR + M+ F L+E Q Sbjct: 367 ERRTAFDKARAEARAHILEGLRIALDNIDRIITIIRESQTDAIAQKTMMDEFLLSEKQSQ 426 Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489 AIL++RLR L LE +I++E +L+A + +L ++ I E+ EVK F+ Sbjct: 427 AILDMRLRRLTGLERDKIEAEYQDLVALIADLTDILAKPERVKKIIREELEEVKRKFAD- 485 Query: 490 TDLGRRRTTFC--EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------D 539 +RRT EV + +IE+E + + +SN+G+I+ L + Sbjct: 486 ----KRRTELLVGEVL----TLEDEDLIEEEDVLITLSNKGYIKRLANDEFRAQNRGGRG 537 Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS-GR-GHGEAIQLLIDLN 597 + + + D ++ + T D +L + G+ Y + + GR G I L+ L+ Sbjct: 538 VQGMGMSDDDFVQHLVSTSTHDHLLFFTNLGRVYRMKGYEIPEYGRTAKGLPIVNLLKLD 597 Query: 598 HNQDIVTAFVY--DSTCKLLVVSSKGNAFIVEESEIIANTR-KGKTFLKVSSEEKMKLVV 654 + I T D K L +++ + +N R G LK+ +++ V+ Sbjct: 598 DGEKIATIINVDRDQAAKYLFFTTRNGIVKRTSTSQFSNIRTNGLKALKLRDGDELINVL 657 Query: 655 KVTGDHVAVVG 665 + +G+ ++G Sbjct: 658 RTSGEDEVIIG 668 >gi|29346309|ref|NP_809812.1| DNA gyrase subunit A [Bacteroides thetaiotaomicron VPI-5482] gi|29338204|gb|AAO76006.1| DNA gyrase subunit A [Bacteroides thetaiotaomicron VPI-5482] Length = 858 Score = 396 bits (1017), Expect = e-108, Method: Compositional matrix adjust. Identities = 260/777 (33%), Positives = 416/777 (53%), Gaps = 57/777 (7%) Query: 12 LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71 L ++ + +++ ++ Y+ Y++S I RA+PD+RDGFKPVHRRI++ M E+G Sbjct: 2 LEQDRIIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILYGMMELGNTSDKP 61 Query: 72 FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131 +KKSARIVGEV+GK HPHGD SVY ++VR+AQ + RYPL+ GQGNFG++DGDS AA RY Sbjct: 62 YKKSARIVGEVLGKYHPHGDSSVYYAMVRMAQEWAMRYPLVDGQGNFGSVDGDSPAAMRY 121 Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191 TEAR+ ++ E ++ + ++ VDF ++ +EP V P++ PNLL NG SGIAVGMAT++ Sbjct: 122 TEARLNKLGEAMMDDLYKETVDFEPNFDNTLTEPKVMPTRIPNLLVNGASGIAVGMATNM 181 Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251 P HN+ E+ +A A IDN EI++E+L+ Y+ PDFPTGG I + E Y GRG Sbjct: 182 PPHNLSEVIDACEAYIDNQEITVEELMTYVKAPDFPTGGYIY-GISGVREGYLTGRGRVV 240 Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VR 310 +RA+ + E G+ IVVTEIPY V K+ LI+ IA+L+ KRI + + DES D +R Sbjct: 241 MRAKAEI-ETGQTHDKIVVTEIPYNVNKAELIKYIADLVNDKRIEGISNANDESDRDGMR 299 Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370 IV+ K R + +++ ++ ++ ++T F +N L GR P+ + L ++K ++ HR E Sbjct: 300 IVIDVK-RDANASVVLNKLYKMTALQTSFGVNNVALVHGR-PKTLNLRDMIKYFVEHRHE 357 Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQ 427 V+ RR+ F ++ R IL+GL+IA NIDE+I IIR P ++ RF+LTE Q Sbjct: 358 VVIRRTQFDLRKAKERAHILEGLIIASDNIDEVIRIIRAAKTPNDAIAGLIERFNLTEIQ 417 Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487 AI+ +RLR L L + Q+ +E + ++ + ++S+L + + E+ EVK + Sbjct: 418 SRAIVEMRLRQLTGLMQDQLHAEYEEIMKQIAYLESILADDEVCRKVMKDELLEVKAKYG 477 Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVD 539 RR+ E+ + + + + + + IS+ G+I R+ V Sbjct: 478 DE-----RRS---EIVYSSEEFNPEDFYADDQMIITISHMGYIKRTPLTEFRAQNRGGVG 529 Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLN 597 ++ D ++ A + ++ + GK Y L + G G AIQ L++++ Sbjct: 530 SKGTETRDADFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTKNSKGRAIQNLLNID 589 Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG---KTFLKVSSEEKMKLVV 654 + D VTA+ L V S + + ++ T+KG KT L+ S + V Sbjct: 590 SD-DSVTAY--------LRVKSLDDTEYINSHYVLFCTKKGVIKKTLLEQYSRPRQNGVN 640 Query: 655 KVT---------------GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGIS 698 +T + + + N + + F + M R GVR + + G Sbjct: 641 AITIREDDSVIEVRMTNGNNEIIIANRNGRAIRFHEAAVRVMGRTATGVRGITLDNDGQD 700 Query: 699 DV---ICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752 +V IC K E + + + + Y + RGG G ++GK ++ Sbjct: 701 EVIGMICIKDLETESVMVVSEQGYGKRSEIEDYRKTNRGGKGVKTMNITEKTGKLVT 757 >gi|254994833|ref|ZP_05277023.1| DNA gyrase subunit A [Anaplasma marginale str. Mississippi] Length = 902 Score = 396 bits (1017), Expect = e-108, Method: Compositional matrix adjust. Identities = 229/602 (38%), Positives = 342/602 (56%), Gaps = 59/602 (9%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 V VS+ LE YL+YA+S I RAIPD+RDG KPVHRRI+++M + G D +KK+A Sbjct: 5 VLPVSIEQELESSYLSYAMSVIVSRAIPDIRDGLKPVHRRILYSMYKSGYDHNKPYKKAA 64 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+V+G+ HPH D ++YD+LVR+AQ F PLI QGNFG+IDGD A+ RYTEAR+ Sbjct: 65 RVVGDVMGRYHPHADTAIYDALVRMAQDFSLLVPLIDSQGNFGSIDGDPPASMRYTEARL 124 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 ++ A +L +DED VDFR Y+E + EPV+ P++FPNLL NG G+AVGM+T+IPSHN+ Sbjct: 125 SEAAHFLLNDIDEDTVDFRPNYDENEEEPVILPAEFPNLLVNGAGGVAVGMSTNIPSHNL 184 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ +A +A I+ PEI++++L+ I GPDFPTGG+I+ I ++ GRG VR R Sbjct: 185 GEVVDACVAYIERPEITLDELMAIIPGPDFPTGGVIM-GDAGIRSAFASGRGTIVVRGRT 243 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316 EE+ G I++ EIPYQV K++L+E+I EL+ K+I + D+RDES + V Sbjct: 244 HTEELPSGRQAIIIDEIPYQVNKAKLVERIHELVKEKKIEGVADLRDESNKSGVRVAIEL 303 Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376 R +D +++ + L+ + T F +N VL + P+VM L I+ ++ R+EV+ RR+ Sbjct: 304 KRQVDSQVVLNQLLGLTPLRTSFSINTLVLENNK-PRVMSLPEIIATFVDFRKEVIVRRT 362 Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN--------------------------- 409 FR++ I + + G+ IA LNIDE+++II++ Sbjct: 363 RFRLKKIREKAHLYIGMYIAVLNIDEVVSIIKSSKDSAEASAALRERRWAPSADIRNMIE 422 Query: 410 --EDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLA---EKEKI--- 461 D V + LT QV AIL +RL+ L LE+ ++++EL++++A E KI Sbjct: 423 LVSDSTGVVEGGMYQLTVPQVKAILEMRLQRLTGLEKDKLEAELESMVALITEYTKILST 482 Query: 462 DSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPIT 521 DSLL +Q + L + R T E S D+ +++I KE + Sbjct: 483 DSLLMDIVKQG------------LLDAKAKLAKPRNTAIEQS-VDEID-AESLIPKEEMV 528 Query: 522 VVISNRGWIRSLKSHSVDLS--------ALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573 V ++ G+++ +K + A KE D T +L S GK Y Sbjct: 529 VTVTMNGFVKRVKLSNYRAQKRGGKGRVAQGIKEEDVTTKLFVVDTHTSVLFFSNVGKVY 588 Query: 574 TL 575 L Sbjct: 589 KL 590 >gi|265753581|ref|ZP_06088936.1| DNA gyrase, A subunit [Bacteroides sp. 3_1_33FAA] gi|263235295|gb|EEZ20819.1| DNA gyrase, A subunit [Bacteroides sp. 3_1_33FAA] Length = 852 Score = 396 bits (1017), Expect = e-108, Method: Compositional matrix adjust. Identities = 253/769 (32%), Positives = 422/769 (54%), Gaps = 41/769 (5%) Query: 12 LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71 L ++ + +++ ++ Y+ Y++S I RA+PD+RDGFKPVHRRI++ M E+G A Sbjct: 2 LEQDRIIKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMIELGNTSDKA 61 Query: 72 FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131 +KKSARIVGEV+GK HPHGD SVY +LVR+AQ + RYPL+ GQGNFG++DGDS AA RY Sbjct: 62 YKKSARIVGEVLGKYHPHGDFSVYGALVRMAQDWAMRYPLVDGQGNFGSVDGDSPAAMRY 121 Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191 TEAR+ ++ E ++Q + ++ VDF++ +++ EP V P++ PNLL NG SGIAVGMAT++ Sbjct: 122 TEARLKKIGEEMMQDLYKETVDFQNNFDDTLQEPTVMPTRIPNLLVNGASGIAVGMATNM 181 Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251 P+HN+ E+ +A +A IDN +I IE L++Y+ PDFPTGG I + ++Y GRG Sbjct: 182 PTHNLSEVIDACIAYIDNNDIDIEGLMQYVKAPDFPTGGYIY-GISGVRDAYETGRGRVV 240 Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVR 310 +RA+ + E I+V EIPY V K LIE IA L+ K+I + + DES E +R Sbjct: 241 MRAKAEI-ETHTTHDKIIVNEIPYNVNKKELIENIASLVNDKKIDGISYVNDESDREGMR 299 Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370 IV+ K R + +++ +F ++ ++T F +N L GR P+++ L +++ ++ HR + Sbjct: 300 IVIDVK-RDANASVVLNKLFKMTALQTSFGVNNIALVHGR-PKMLNLKDLIRYFVEHRHD 357 Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQ 427 V+ RR+ + ++ R IL+GL+IA NIDE+I IIR P ++ RF+L+E Q Sbjct: 358 VVIRRTQYDLRKAQERAHILEGLIIASDNIDEVIRIIRAAKTPNDAIAGLIERFNLSEIQ 417 Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487 AI+ +RLR L L + Q+ +E + ++ + + +L++ + I E+ EVKE + Sbjct: 418 ARAIVEMRLRQLTGLMQDQLHAEYEEVMKQIAYYEEILSNDELCKKVIKDELIEVKEKYG 477 Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVD 539 + RR+ E+ + + + + + + IS+ G+I R+ V Sbjct: 478 DA-----RRS---EIVYSSEEFNPEDFYADDQMVITISHMGYIKRTPLSEFRAQNRGGVG 529 Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLN 597 ++ D ++ A + ++ + GK Y L + G G AIQ L++++ Sbjct: 530 SKGSETRDEDFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTKNAKGRAIQNLLNID 589 Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANT---------RKGKTFLKVSSEE 648 + D+VTA++ + ++ +I T + G + + ++ Sbjct: 590 SD-DVVTAYLRVKNLNDTEFINSHYVLFCTKNGVIKKTLLEQYSRPRQNGVNAITIREDD 648 Query: 649 KMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSY-KDGG--ISDVICF 703 K+ V GD+ + + N + + F + M R GVR + +DGG + +IC Sbjct: 649 KVIEVRMTNGDNEIIIANRNGRAIRFHESAVRVMGRTATGVRGMTLDEDGGDEVIGMICI 708 Query: 704 KICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752 K E + + + + Y + + RGG G ++GK ++ Sbjct: 709 KDPEAESIMVVSEQGYGKRSDIEDYRKTNRGGKGVKTLNITDKTGKLVA 757 >gi|254281687|ref|ZP_04956655.1| DNA gyrase, A subunit [gamma proteobacterium NOR51-B] gi|219677890|gb|EED34239.1| DNA gyrase, A subunit [gamma proteobacterium NOR51-B] Length = 865 Score = 396 bits (1017), Expect = e-108, Method: Compositional matrix adjust. Identities = 261/739 (35%), Positives = 408/739 (55%), Gaps = 83/739 (11%) Query: 6 ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65 ++++ T + V V++ L++ Y+ YA+S I RA+PD+RDG KPVHRR++ AM+E+ Sbjct: 1 MADTPTQIAREVLPVNIEDELKQSYMDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELN 60 Query: 66 LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125 D+ +KKSAR+VG+VIGK HPHGD +VYD++VR+AQ F RY L+ GQGNFG++DGDS Sbjct: 61 NDWNKPYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQDFSLRYTLVDGQGNFGSVDGDS 120 Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185 AAA RYTE RM++VA +L +D++ VDF D Y+ + P V P++ PNLL NG+SGIAV Sbjct: 121 AAAMRYTEIRMSKVAHALLADLDKETVDFVDNYDGTERIPSVLPTRVPNLLVNGSSGIAV 180 Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245 GMAT+IP HN++E+ LA +DN +I+I++L++YI GPDFPTG II R IV++YR Sbjct: 181 GMATNIPPHNMREVIAGCLAYLDNSDITIDQLMDYIPGPDFPTGAII-NGRAGIVQAYRT 239 Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305 GRG VRAR V +G I+V EIPYQ+ K+RLIE+IAEL+ K+I + ++RDES Sbjct: 240 GRGRIYVRARAEVVSDSKGKDTIIVHEIPYQLNKARLIERIAELVKEKKIEGITELRDES 299 Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365 +D V+ R D+++ +++ + +++ +NM L G+ P+V+ L ++ ++ Sbjct: 300 DKDGLRVVIELRRGEVGDVVLNNLYAQTALQSVVGMNMVALVDGQ-PKVLNLKEMIAAFV 358 Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK------------- 412 HRREV+ RR+ + ++ R +L+GL +A NIDE+I +I++ Sbjct: 359 RHRREVVTRRTVYLLKKARERGHVLEGLAVALANIDEVIEMIKSSPTAADARERLIDAAW 418 Query: 413 -PKPV--MVSR---------------------FSLTENQVDAILNLRLRSLRKLEEYQIK 448 P V M+ R + L+ Q AIL+LRL L LE ++ Sbjct: 419 APGDVNAMLERAGAAACRPDDLDVCYGLVEGAYHLSPAQAQAILDLRLHRLTGLEHEKLL 478 Query: 449 SELDNLLAE-KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADK 507 E + L E + +D L +S ++ IRE E+ + G R T E++ + Sbjct: 479 QEYADKLTEIADYLDILEDS-----ERLKRVIRE--ELEETVAEFGDERMT--EITDSAH 529 Query: 508 ATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHT 559 + +I +E V IS+ G+ ++ + SA K+ D ++ L A T Sbjct: 530 DLTVEDLITEEDRVVTISHGGYAKTQPLTDYQAQRRGGTGRSATAVKDEDFVEHLLIAST 589 Query: 560 TDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKL 614 IL S GK Y L N+ S G + L+ L+ + + + Y++ + Sbjct: 590 HSTILCFSNLGKVYWLRVFNIPVASRNSRGRPMVNLLPLDDGERVTSILPVEGYEAGSYI 649 Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHV---AVVGENRKLL 671 + ++KG V+++E+ R+ L+ E+ GDH+ AV + ++ Sbjct: 650 FMATAKGT---VKKTEMTQFARQRSVGLRAIELEE--------GDHLVGTAVTDGSCDVM 698 Query: 672 IFSIDQIPEMSRGKGVRLQ 690 +FS S GK VR Sbjct: 699 LFS-------SEGKAVRFN 710 >gi|300071040|gb|ADJ60440.1| DNA gyrase subunit A [Lactococcus lactis subsp. cremoris NZ9000] Length = 829 Score = 395 bits (1016), Expect = e-107, Method: Compositional matrix adjust. Identities = 244/671 (36%), Positives = 387/671 (57%), Gaps = 31/671 (4%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 ++NV V+L ++ + YA+S I RA+PD+RDG KPVHRRI++ M+E+G K Sbjct: 3 DKNVINVNLVEEMKTSFRDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGNTPDKPHK 62 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSARIVGEV+GK HPHGD S+Y+++VR+AQ + R+ L G GNFG++DGD AAA RYTE Sbjct: 63 KSARIVGEVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLADGHGNFGSMDGDGAAAMRYTE 122 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 AR++++A +L+ ++++ VDF D ++ + EP+V P++FPNLL NGT+GIAVGMAT+IP Sbjct: 123 ARLSKIAMEMLRDINKNTVDFMDNFDGTEREPLVLPARFPNLLVNGTTGIAVGMATNIPP 182 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E +A L++NPE S+ L+ I GPDFPTG +++ + I +Y G+G +R Sbjct: 183 HNLGETIDAVDMLMENPEASVTDLMSVIPGPDFPTGALVM-GKSGIRRAYETGKGSITLR 241 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312 A+ +EE+ G IVVTE+PY V K+RL+E I L KRI L +RDES E +R+V Sbjct: 242 AKTHIEEMAGGKERIVVTELPYMVNKARLVEHIVRLNHEKRIEGLTAVRDESNREGIRVV 301 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 + + R L +++ ++F L+ ++T F NM + G +P+++ L IL +++ H+ EV+ Sbjct: 302 IEVR-RDLSAHVILNNLFKLTSLQTSFGFNMLAIEKG-IPKILSLKEILVDYIEHQIEVV 359 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVD 429 RR++F + R IL+GL IA NID II IIR + M+ F L+E Q Sbjct: 360 ERRTAFDKARAEARAHILEGLRIALDNIDRIITIIRESQTDAIAQKTMMDEFLLSEKQSQ 419 Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489 AIL++RLR L LE +I++E +L+A + +L ++ I E+ EVK F+ Sbjct: 420 AILDMRLRRLTGLERDKIEAEYQDLVALIADLTDILAKPERVKKIIREELEEVKRKFAD- 478 Query: 490 TDLGRRRTTFC--EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------D 539 +RRT EV + +IE+E + + +SN+G+I+ L + Sbjct: 479 ----KRRTELLVGEVL----TLEDEDLIEEEDVLITLSNKGYIKRLANDEFRAQNRGGRG 530 Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS-GR-GHGEAIQLLIDLN 597 + + + D ++ + T D +L + G+ Y + + GR G I L+ L+ Sbjct: 531 VQGMGMSDDDFVQHLVSTSTHDHLLFFTNLGRVYRMKGYEIPEYGRTAKGLPIVNLLKLD 590 Query: 598 HNQDIVTAFVY--DSTCKLLVVSSKGNAFIVEESEIIANTR-KGKTFLKVSSEEKMKLVV 654 + I T D K L +++ + +N R G LK+ +++ V+ Sbjct: 591 DGEKIATIINVDRDQAAKYLFFTTRNGIVKRTSTSQFSNIRTNGLKALKLRDGDELINVL 650 Query: 655 KVTGDHVAVVG 665 + +G+ ++G Sbjct: 651 RTSGEDEVIIG 661 >gi|319760599|ref|YP_004124537.1| DNA gyrase, A subunit [Candidatus Blochmannia vafer str. BVAF] gi|318039313|gb|ADV33863.1| DNA gyrase, A subunit [Candidatus Blochmannia vafer str. BVAF] Length = 846 Score = 395 bits (1016), Expect = e-107, Method: Compositional matrix adjust. Identities = 238/637 (37%), Positives = 365/637 (57%), Gaps = 60/637 (9%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + V + L+ YL YA+S I RA+PD+RDG KPVHRR++ AM +G + +KKSA Sbjct: 8 ITQVYIEEELKRSYLDYAMSVIIGRALPDVRDGLKPVHRRVLFAMQILGNYWNKNYKKSA 67 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 RIVG+VIGK HPHGD +VYD++VR+AQPF+ RY LI GQGNFG++DGDSAAA RYTE RM Sbjct: 68 RIVGDVIGKYHPHGDSAVYDTIVRMAQPFLMRYVLIDGQGNFGSVDGDSAAAMRYTEIRM 127 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 ++++ +L ++++ VD+ Y+ + P V P++ PN+L NG+SGIAVGMAT+IP HN+ Sbjct: 128 SKISNELLSDLEKETVDYEFNYDGTERIPEVLPARIPNILINGSSGIAVGMATNIPPHNL 187 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ LA IDN I+I++L+++I GPDFP+ +I + E + ++Y G+G +RAR Sbjct: 188 SEVVNGCLAFIDNENITIDELMQHIPGPDFPSAAVINDCSE-LKKAYETGKGKIYIRARA 246 Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314 + +V G I+V EIPYQV KS+L+EKIAEL+ KRI + +RDES +D +R+V+ Sbjct: 247 EINTDVKTGRESIIVYEIPYQVNKSKLLEKIAELVKTKRIDGIHSLRDESDKDGMRVVID 306 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K+ ++ ++++ +++ L+ ++ F +NM L G+ P+VM L IL ++ HRR V+ R Sbjct: 307 IKHDAI-SEIVLNNLYSLTQLQVSFGINMVALHHGQ-PKVMSLKDILSAFICHRRSVITR 364 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE------------------------ 410 R F ++ R+ +L+GL+IA NID +I +IR Sbjct: 365 RILFELKKASNRIHVLEGLVIALSNIDIVIEVIRRSNSAFNAGCILTSQSWRANDVTNMR 424 Query: 411 -------------DKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457 DK + T+NQ AIL+LRL L LE ++ E D+LL + Sbjct: 425 KSISIDLLNSEWLDKNNFTKNNECYFTKNQARAILDLRLHKLTTLEHDKLLVEYDSLLKK 484 Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517 EK+ L + + I E+ +KE +S D+ RRT E++ + + +I + Sbjct: 485 MEKLIFTLKNKSSLMDVIRQELVSIKEEYS---DI--RRT---EINNTIPSIDVENLINQ 536 Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569 + V +S +G+++ + K KE D + L A+T D +LL S Sbjct: 537 RDVVVTLSYQGYVKYQPLTDYEAQKRGGKGKLTTRIKEEDFITQLLIANTHDTVLLFSNY 596 Query: 570 GKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVT 604 G+ Y + L + G I L+ L+ N+ I T Sbjct: 597 GRIYWMKVYRLPEVKRSSRGRPIINLLPLDVNERITT 633 >gi|302326338|gb|ADL25539.1| DNA gyrase, A subunit [Fibrobacter succinogenes subsp. succinogenes S85] Length = 899 Score = 395 bits (1016), Expect = e-107, Method: Compositional matrix adjust. Identities = 227/593 (38%), Positives = 355/593 (59%), Gaps = 30/593 (5%) Query: 26 LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85 +++ YL Y++S I RA+PD RDGFKPVHRR++++M ++G+ KSARIVG+VIGK Sbjct: 15 MQDCYLRYSMSVIVARALPDARDGFKPVHRRVMYSMHKLGVVPNKGTVKSARIVGDVIGK 74 Query: 86 LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145 HPHGD +VYD+L R+AQ F RYPL+ GQGNFG+IDGDS AA RYTEA+M + L+L+ Sbjct: 75 YHPHGDVAVYDTLARMAQDFSLRYPLVFGQGNFGSIDGDSPAAMRYTEAKMNNLGALMLE 134 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 ++++ VD Y+E EP+V PS PN++ NGTSGIAVGMAT++ HN++E+ A A Sbjct: 135 DLEKETVDMGPNYDESLEEPLVLPSALPNMIVNGTSGIAVGMATNMAPHNLREVGAAIHA 194 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265 L +NP+++ E L+EY+ GPDFPTG I+ R I E+Y G G RVRAR +E +G Sbjct: 195 LAENPDLTGEDLMEYVKGPDFPTGAIVC-GRSGIREAYLTGHGRVRVRARTEIETDAKGK 253 Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325 I+VTEIPY V K+ L +KIA+L+ KRI + DIRDES+ D+RIV+ + R +++ Sbjct: 254 PRIIVTEIPYMVNKAELCKKIADLVRDKRIDGITDIRDESSRDIRIVIELR-RDAVGEVV 312 Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385 + ++F + ++T F + N+ + +P+++ L +L+ ++ HR +V+ R + F ++ Sbjct: 313 LNNLFKYTQLQTTFSI-YNLALVNNLPKLLTLKDLLQVYIDHRLDVITRATQFDLKKAAA 371 Query: 386 RVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAILNLRLRSLRKL 442 R+ I++GL IA NIDE++ IIR K + RFSL E Q AI+++RL L L Sbjct: 372 RLHIIEGLRIATQNIDEVVKIIRQSKTTEIAKQSLQDRFSLDEIQSQAIVDMRLAQLVGL 431 Query: 443 EEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEV 502 ++++E + L+A + +L +++ ++A ++++ + K D RRTT E Sbjct: 432 NIEKLEAEYNELIATVADLKDIL---EKRERRVAIMLQKLDAVVDKYGD--ERRTTIGE- 485 Query: 503 SRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD--------LSALHFKEGDSLKIA 554 A + + +I +E + +S G+IR L + + K+ D+++ Sbjct: 486 --AIDDSDDEDLIAEEEQVITLSKEGYIRRLPIDTFKAQNRGGKGIIGAGLKDEDNVEQI 543 Query: 555 LHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602 A T +L+ + G K Y LP G + G G I + L + + Sbjct: 544 FTASTHSYLLVFTNKGRVYWTKVYRLPEG---ARNGKGRPIVNFVALTEGEKV 593 >gi|118578454|ref|YP_899704.1| DNA gyrase subunit A [Pelobacter propionicus DSM 2379] gi|118501164|gb|ABK97646.1| DNA gyrase subunit A [Pelobacter propionicus DSM 2379] Length = 843 Score = 395 bits (1016), Expect = e-107, Method: Compositional matrix adjust. Identities = 261/726 (35%), Positives = 409/726 (56%), Gaps = 73/726 (10%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 +N AV++ ++ Y+ YA+S I RA+PD+RDG KPVHRR ++AM +M D+ +KK Sbjct: 6 QNKIAVNIEDEMKRSYMDYAMSVIIGRALPDVRDGLKPVHRRCLYAMYDMSNDWNKPYKK 65 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 SAR+VG+VIGK HPHGD + YD++VR+AQ F RY L+ GQGNFG+IDGD AA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDTAAYDTIVRMAQDFSLRYTLVDGQGNFGSIDGDRPAAMRYTEI 125 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 R+ Q++ +L +D++ V YN+E EP V PSKFPNLL NG++GIAVGMAT+IP H Sbjct: 126 RLRQLSHELLADLDKETVGMAPNYNDELLEPTVLPSKFPNLLINGSTGIAVGMATNIPPH 185 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 N+ E+ + +A+I+NP+++ E+LL I GPDFPTG I R+ I ++Y GRG ++RA Sbjct: 186 NLGEVIDGIIAVINNPDLAHEELLALIPGPDFPTGATIY-GRQGIRDAYTTGRGIIQIRA 244 Query: 255 RWCVEEVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIV 312 + +E + I+VTE+PYQV K+RLIEKIAEL+ K+I + +IRDES E +RIV Sbjct: 245 KAHIEAAKKSERQSIIVTELPYQVNKARLIEKIAELVKEKKIEGIAEIRDESDREGMRIV 304 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 + K R +P++L+ ++ L+ M+T F + + + R P+++ L ++ ++ HR EV+ Sbjct: 305 VEVK-RDDNPEVLLNLLYKLTQMQTSFGIILLAIVHNR-PRILSLREMIDCFIEHRAEVV 362 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP----KPVMVSRFS------ 422 RR++F ++ R IL+GL IA +D +I +IR+ P + +M F+ Sbjct: 363 TRRTNFELKKALARAHILEGLKIALDWLDAVIELIRSSKTPPEAKQGLMEGAFADAEFLA 422 Query: 423 ---------------LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467 L+E Q AIL +RL+ L LE +I SE + ++ ++ +L S Sbjct: 423 RLELPRPVGYDDGVHLSEIQAQAILEMRLQRLTGLERDKILSEYEEIMKLIARLREILAS 482 Query: 468 GKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNR 527 ++ +N I E+ E+++ F D+ R E+S + I E + V IS+ Sbjct: 483 DREIFNIIISELTEIRDKFG---DIRR-----SEISDTTPDISLEDTIMDEEMVVTISHT 534 Query: 528 GWIRSLKSHSVDL-----------SALHFKEGDSLKIALHAHTTDRILLLSTDG-----K 571 G+I K +VDL + + +E D ++ A T D +L + G K Sbjct: 535 GYI---KRSAVDLYRSQRRGGKGKTGMKTREEDFVEQLFIASTKDYLLCFTDAGRMYWLK 591 Query: 572 AYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEE 628 Y +P GN + G+A+ L+++ + I T + L + + G +V++ Sbjct: 592 VYEIPEGNRTT---KGKAVVNLVNVGMEEKITTILPVKEFSEHTFLFMATRNG---VVKK 645 Query: 629 SEII--ANTRKGKTFLKVSSEEKMKLVVKVTGD---HVAVVGENRKLLIFSIDQIPEMSR 683 + +I +N R G + V+ ++ KL+ D V + N K + FS + M R Sbjct: 646 TPLIEYSNVRSGG-IIAVNLDDGDKLIGVALTDGTKDVFLASRNGKAIRFSEQDVRSMGR 704 Query: 684 -GKGVR 688 +GVR Sbjct: 705 VTRGVR 710 >gi|189461351|ref|ZP_03010136.1| hypothetical protein BACCOP_02006 [Bacteroides coprocola DSM 17136] gi|189431880|gb|EDV00865.1| hypothetical protein BACCOP_02006 [Bacteroides coprocola DSM 17136] Length = 845 Score = 395 bits (1016), Expect = e-107, Method: Compositional matrix adjust. Identities = 260/778 (33%), Positives = 418/778 (53%), Gaps = 63/778 (8%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 ++ + +++ +++ Y+ Y++S I RA+PD+RDGFKPVHRRI++ M E+G +K Sbjct: 4 QDRIIKINIEEEMKKSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMMELGNTSDKPYK 63 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 K+ARIVGEV+GK HPHGD SVY +LVR+AQ + RYPL+ GQGNFG++DGDS AA RYTE Sbjct: 64 KAARIVGEVLGKYHPHGDSSVYGALVRMAQDWAMRYPLVDGQGNFGSVDGDSPAAMRYTE 123 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 AR+ ++ E ++Q + ++ VDF + +++ EP V P++ PNLL NG SGIAVGMAT++P+ Sbjct: 124 ARLKKIGEDMMQDLYKETVDFTNNFDDTLQEPTVMPTRIPNLLVNGASGIAVGMATNMPT 183 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E+ +A +A IDN +I ++ L+ YI PDFPTGG I + ++Y GRG +R Sbjct: 184 HNLSEVIDACVAYIDNNDIDVDGLMHYIKAPDFPTGGYIY-GISGVRDAYETGRGRVVMR 242 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIV 312 A+ +E I+V EIPY V K LIE IA L+ K+I + + DES E +RIV Sbjct: 243 AKTEIESHPTHDK-IIVNEIPYNVNKKELIENIAALVNDKKIEGISYVNDESDREGMRIV 301 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 + K R + +++ +F ++ ++T F +N L GR P+++ L +++ ++ HR EV+ Sbjct: 302 IDVK-RDANASVVLNKLFKMTALQTSFGVNNIALVHGR-PKLLNLKDLIRLFVEHRHEVV 359 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVD 429 RR+ F ++ R IL+GL+IA NIDE+I IIR P ++ RF LTE Q Sbjct: 360 IRRTQFDLRKAKERAHILEGLIIASDNIDEVIRIIRAAKTPNEAITNLMDRFQLTEVQSR 419 Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489 AI+ +RLR L L + Q+ +E + L+ + + +L + + I E+ EVKE + Sbjct: 420 AIVEMRLRQLTGLLQDQLHAEYEELMKQIAYFEEILTNEELCKKVIKDELIEVKEKYGD- 478 Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLS 541 +RR+ E+ A + + + + + IS+ G+I R+ V Sbjct: 479 ----QRRS---EIVYASEEFNPEDFYADDEMVITISHLGYIKRTPLSEFRAQHRGGVGSK 531 Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL-----PAGNLLSGRGHGEAIQLLIDL 596 ++ D ++ A + ++ + GK Y L P GN S G AIQ L+++ Sbjct: 532 GSETRDEDFIEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGNKTS---KGRAIQNLLNI 588 Query: 597 NHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG---KTFLKVSSEEKMKLV 653 + + D+VTA+ L V + + + ++ T+ G KT L+ S + V Sbjct: 589 DSD-DVVTAY--------LRVKNLNDTEFINSHYVLFCTKNGVIKKTLLEQYSRPRQNGV 639 Query: 654 VKVT---------------GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGI 697 +T + + + N + + F + EM R GVR + + G Sbjct: 640 NAITIREDDRVIEVRMTNGNNEIVIANRNGRAIRFHESAVREMGRTATGVRGITLDEDGT 699 Query: 698 SDV---ICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752 +V IC K + T + + Y + + RGG G ++GK ++ Sbjct: 700 DEVIGMICIKNPQEETIMVISENGYGKRSDIEDYRKTNRGGKGVKTLSITEKTGKLVA 757 >gi|254882014|ref|ZP_05254724.1| DNA gyrase subunit A [Bacteroides sp. 4_3_47FAA] gi|254834807|gb|EET15116.1| DNA gyrase subunit A [Bacteroides sp. 4_3_47FAA] Length = 840 Score = 395 bits (1016), Expect = e-107, Method: Compositional matrix adjust. Identities = 252/755 (33%), Positives = 415/755 (54%), Gaps = 41/755 (5%) Query: 26 LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85 ++ Y+ Y++S I RA+PD+RDGFKPVHRRI++ M E+G A+KKSARIVGEV+GK Sbjct: 1 MKSSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMIELGNTSDKAYKKSARIVGEVLGK 60 Query: 86 LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145 HPHGD SVY +LVR+AQ + RYPL+ GQGNFG++DGDS AA RYTEAR+ ++ E ++Q Sbjct: 61 YHPHGDFSVYGALVRMAQDWAMRYPLVDGQGNFGSVDGDSPAAMRYTEARLKKIGEEMMQ 120 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 + ++ VDF++ +++ EP V P++ PNLL NG SGIAVGMAT++P+HN+ E+ +A +A Sbjct: 121 DLYKETVDFQNNFDDTLQEPTVMPTRIPNLLVNGASGIAVGMATNMPTHNLSEVIDACIA 180 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265 IDN +I IE L++Y+ PDFPTGG I + ++Y GRG +RA+ + E Sbjct: 181 YIDNNDIDIEGLMQYVKAPDFPTGGYIY-GISGVRDAYETGRGRVVMRAKAEI-ETHTTH 238 Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFPKNRSLDPDL 324 I+V EIPY V K LIE IA L+ K+I + + DES E +RIV+ K R + + Sbjct: 239 DKIIVNEIPYNVNKKELIENIASLVNDKKIDGISYVNDESDREGMRIVIDVK-RDANASV 297 Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384 ++ +F ++ ++T F +N L GR P+++ L +++ ++ HR +V+ RR+ + ++ Sbjct: 298 VLNKLFKMTALQTSFGVNNIALVHGR-PKMLNLKDLIRYFVEHRHDVVIRRTQYDLRKAQ 356 Query: 385 RRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVDAILNLRLRSLRK 441 R IL+GL+IA NIDE+I IIR P ++ RF+L+E Q AI+ +RLR L Sbjct: 357 ERAHILEGLIIASDNIDEVIRIIRAAKTPNDAIAGLIERFNLSEIQARAIVEMRLRQLTG 416 Query: 442 LEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCE 501 L + Q+ +E + ++ + + +L++ + I E+ EVKE + + RR+ E Sbjct: 417 LMQDQLHAEYEEVMKQIAYYEEILSNDELCKKVIKDELVEVKEKYGDA-----RRS---E 468 Query: 502 VSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKI 553 + + + + + + + IS+ G+I R+ V ++ D ++ Sbjct: 469 IVYSSEEFNPEDFYADDQMVITISHMGYIKRTPLSEFRAQNRGGVGSKGSETRDEDFVEH 528 Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQDIVTAFVYDST 611 A + ++ + GK Y L + G G AIQ L++++ + D+VTA++ Sbjct: 529 IYPATMHNTMMFFTQKGKCYWLKVYEIPEGTKNAKGRAIQNLLNIDSD-DVVTAYLRVKN 587 Query: 612 CKLLVVSSKGNAFIVEESEIIANT---------RKGKTFLKVSSEEKMKLVVKVTGDH-V 661 + ++ +I T + G + + ++K+ V GD+ + Sbjct: 588 LNDTEFINSHYVLFCTKNGVIKKTLLEQYSRPRQNGVNAITIREDDKVIEVRMTNGDNEI 647 Query: 662 AVVGENRKLLIFSIDQIPEMSR-GKGVRLQSY-KDGG--ISDVICFKICEGLTWIDSAGR 717 + N + + F + M R GVR + +DGG + +IC K E + + + + Sbjct: 648 IIANRNGRAIRFHESAVRVMGRTATGVRGMTLDEDGGDEVIGMICIKDPEAESIMVVSEQ 707 Query: 718 SYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752 Y + + RGG G ++GK ++ Sbjct: 708 GYGKRSDIEDYRKTNRGGKGVKTLNITDKTGKLVA 742 >gi|187477845|ref|YP_785869.1| DNA gyrase subunit A [Bordetella avium 197N] gi|115422431|emb|CAJ48956.1| DNA gyrase subunit A [Bordetella avium 197N] Length = 883 Score = 395 bits (1016), Expect = e-107, Method: Compositional matrix adjust. Identities = 236/610 (38%), Positives = 343/610 (56%), Gaps = 61/610 (10%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 VSL + YL YA+S I RA+PD+RDG KPVHRR+++AM E+ D+ A+KKSARIV Sbjct: 11 VSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNRAYKKSARIV 70 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGDQSVYD++VR+AQ F RY L+ GQGNFG+IDGD+AAA RYTE R+ ++ Sbjct: 71 GDVIGKYHPHGDQSVYDTIVRMAQDFSMRYMLVDGQGNFGSIDGDNAAAMRYTEIRLAKI 130 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A +L +D++ VDF Y+ + EP++ PS+ PNLL NG+SGIAVGMAT+IP HN+ E+ Sbjct: 131 AHELLADIDQETVDFGPNYDGSEQEPLLLPSRLPNLLVNGSSGIAVGMATNIPPHNLGEV 190 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 E L + NPE +I++LLE I PDFPTGGII + E YR GRG +RA+ E Sbjct: 191 VEGCLYCLRNPECTIDELLEIIPAPDFPTGGIIY-GMVGVREGYRTGRGRVIMRAKTHFE 249 Query: 260 EVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318 ++ +G+ IVV IPYQV K L E+IAEL+ K+I + DIRDES +D ++ R Sbjct: 250 DMDKGNRQAIVVDAIPYQVNKKTLQERIAELVNEKKIEGISDIRDESDKDGMRLVIELKR 309 Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378 P++++ +++ + ++ F +N+ L G+ P+++ L ++ +L HRREV+ RR+ F Sbjct: 310 GEVPEVVLNNLYKNTQLQDTFGMNLVALVDGQ-PRLLNLKQLISYFLQHRREVVTRRTVF 368 Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV-----------------MVSR- 420 +++ R +L+GL +A NID+ IAII+ P PV M++R Sbjct: 369 QLRKARERGHVLEGLAVALANIDDFIAIIKAAPTP-PVARQELMARNWDSSLVREMLARA 427 Query: 421 ---------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453 + L+E Q ILN+RL+ L LE+ +I E + Sbjct: 428 DGDVVGGRQAFRPEDLPEGFGLQGDGQYRLSETQAQEILNMRLQRLTGLEQDKIIGEYKD 487 Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513 ++ + +L ++ I E++ +K FS RR + D L Sbjct: 488 VMDTIADLLDILARPERITTIIGEELQAIKAEFSSGAKDSRRSEIELNATELDTEDLITP 547 Query: 514 MIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565 M + V +S+ G+I RS K A KE D + A+T D +L Sbjct: 548 M----DMVVTMSHGGYIKSQPLSEYRSQKRGGRGKQATQMKENDWVDQLFIANTHDYLLC 603 Query: 566 LSTDGKAYTL 575 S G+ Y L Sbjct: 604 FSNRGRVYWL 613 >gi|226940755|ref|YP_002795829.1| DNA gyrase subunit A [Laribacter hongkongensis HLHK9] gi|226715682|gb|ACO74820.1| GyrA [Laribacter hongkongensis HLHK9] Length = 859 Score = 395 bits (1016), Expect = e-107, Method: Compositional matrix adjust. Identities = 259/742 (34%), Positives = 400/742 (53%), Gaps = 96/742 (12%) Query: 9 SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68 ++ L + VSL + YL YA+S I RA+PD+RDG KPVHRR++ AM E+ D+ Sbjct: 2 TDHLFAKETIPVSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELSNDW 61 Query: 69 GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128 +KKSAR+VG+VIGK HPHGD +VYD++VR+AQ F RYPL+ GQGNFG+IDGD+AAA Sbjct: 62 NRPYKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYPLVDGQGNFGSIDGDNAAA 121 Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188 RYTE RM ++A +L ++++ VDF Y+ + EP+V P+K PNLL NG+SGIAVGMA Sbjct: 122 MRYTEIRMAKIAHELLADIEKETVDFGPNYDGSEHEPLVLPAKIPNLLINGSSGIAVGMA 181 Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248 T+IP HN+ E+ +A LAL+ N +++I++L++ I PDFPT GII + E YR GRG Sbjct: 182 TNIPPHNLNEVVDALLALLANSDMTIDELIDIIPAPDFPTAGIIY-GLAGVREGYRSGRG 240 Query: 249 GFRVRARWCVEEVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307 +RAR VE++GRG +++ E+PYQV K+ L+ KI EL+ K I + D+RDES + Sbjct: 241 RVVIRARTHVEDIGRGDRQALIIDELPYQVNKANLLIKIGELVREKAIDGISDLRDESDK 300 Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367 V+ R PD+++ +++ + ++ F +NM L G+ P+++ L IL+E+L H Sbjct: 301 SGMRVVIELKRGEVPDVVLNNLYKQTQLQDSFGMNMVALVDGQ-PRLLNLKQILEEFLRH 359 Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE----------------- 410 RREV+ RR+ F ++ R +L+GL +A N+DEIIA+I+ Sbjct: 360 RREVVTRRTIFELRKARERGHVLEGLAVALSNVDEIIALIKAAPTPPVAKAELMARQWRS 419 Query: 411 ------------DKPKP--------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSE 450 DK +P + + + L+E Q AIL LRL+ L LE+ +I +E Sbjct: 420 PLVEEMLARVELDKARPDGLLPEFGLQANGYRLSETQAQAILELRLQRLTGLEQDKIVAE 479 Query: 451 LDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATL 510 +++ + +L ++ IA E+ ++K T G R + E D Sbjct: 480 YRDVMDTIMDLLDILARPERVSQIIADELNQIK------TQFGDTRRSEIEPFGGDINL- 532 Query: 511 QQAMIEKEPITVVISNRGWIRSLKSHSVDL--------SALHFKEGDSLKIALHAHTTDR 562 + +I + + V +S+ G++++ A K+ D ++ A+T D Sbjct: 533 -EDLITPQDMVVTLSHTGYMKTQPVTDYQAQRRGGRGKQAAATKDEDFIENLFVANTHDF 591 Query: 563 ILLLSTDG-----KAYTLPAGNLLSGRG----------HGEAIQLLIDLNHNQDIVTAFV 607 +L S+ G K Y LP G+ S RG GE I ++ + D T +V Sbjct: 592 LLCFSSAGRMYWLKVYELPQGSRQS-RGKPIVNLLPLVEGEKINAILPVKGFSD--TEYV 648 Query: 608 YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGEN 667 + +T + V + +AF + R+ + V +E L+ AV N Sbjct: 649 FMATARGTVKKTPLSAF---------SNRRSAGIIAVDLDEGDYLI------GAAVTSGN 693 Query: 668 RKLLIFSIDQIPEMSRGKGVRL 689 ++++FS GK VR Sbjct: 694 SEVMLFS-------DAGKAVRF 708 >gi|226356185|ref|YP_002785925.1| DNA topoisomerase [Deinococcus deserti VCD115] gi|226318175|gb|ACO46171.1| putative DNA topoisomerase, ATP-hydrolyzing (DNA gyrase, subunit A) (DNA topoisomerase II) [Deinococcus deserti VCD115] Length = 811 Score = 395 bits (1016), Expect = e-107, Method: Compositional matrix adjust. Identities = 262/758 (34%), Positives = 413/758 (54%), Gaps = 61/758 (8%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + V + ++ ++ YA++ I +RA+PD+RDG KPV RRI++AM GL KSA Sbjct: 4 IHPVDITSEVKTNFINYAMNVIVDRALPDVRDGLKPVQRRIMYAMLLEGLYSNQKHAKSA 63 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 +VGEV+ K HPHGD S+YD++VRLAQ + RYP++ QGNFG+IDGD AA RYTEARM Sbjct: 64 SVVGEVMKKYHPHGDSSIYDAMVRLAQWWNMRYPMVHPQGNFGSIDGDPPAAMRYTEARM 123 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 T+VAE ++ ++++ VD + Y+E EP V P+ PNLL NG +GIAVGMAT+IP HN+ Sbjct: 124 TKVAEELIADLEKETVDLKPNYDETTEEPSVLPAAVPNLLINGATGIAVGMATNIPPHNL 183 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 EIC LA+ID+P ++++ L+E++ GPDFPTGG I ++ I E+Y G G +VR + Sbjct: 184 TEICNGLLAMIDDPNLTLDGLMEHVTGPDFPTGGRI--TKTGIREAYATGHSGLKVRGKA 241 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES--AEDVRIVLF 314 +EE G I+++EIPYQV K+ LI+ I+ + A +IP + +RDES + VRIV+ Sbjct: 242 RIEE-KNGRNQIIISEIPYQVNKTNLIQTISAMYKAGKIPDISALRDESDRKDPVRIVVE 300 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K R P L++ ++ + ++T + + +N+ +G P+V+PL ++ +L HR +V+ R Sbjct: 301 LK-RGAIPTLVLNQLYKYTQLQTTYTV-INLSIVGGEPRVLPLLNTMQYFLDHRADVVTR 358 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAI 431 R+ + ++ + R +L+GLL A +IDE+I++IR + + + ++ RF LTE Q AI Sbjct: 359 RTRYDLRKAEERAHVLEGLLKALDHIDEVISLIRGSNTGAEARDALMVRFGLTEIQSQAI 418 Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491 L++RL+ L LE ++++E D L E + S+L K W +I EIR +++ + Sbjct: 419 LDMRLQRLVGLEREKLQAEFDELQKTIEYLRSILGDEKLLWREIKKEIRAIRDNYGDE-- 476 Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK--------SHSVDLSAL 543 RR+T E+ ++ ++ +I E + + ++ G+++ K S Sbjct: 477 ---RRSTITEL---EEDIGKEDLIAVEDMVITMTKAGYLKRTKLDAYRAQGRGGRGSSGG 530 Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGR-GHGEAIQ-LLIDL 596 +E D T D +L + G K Y LP +GR G I+ LL L Sbjct: 531 KLREEDVNTRVFVGSTHDYLLFFTDQGRVFHEKIYDLPE----AGRDAKGTHIRNLLPSL 586 Query: 597 NHNQDIVTAFV---YDSTCKLLVVSSKG---NAFIVEESEIIANTRKGKTFLKVSSEEKM 650 +++I + +D + + KG I E I T G + + +++ Sbjct: 587 REDENIASVLSVGGFDEPGCFIFATRKGVVKKTLITEYGNI---TSAGLIAINLQPGDEL 643 Query: 651 KLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSRGK----GVRLQSYKDGGISDVICFKI 705 V V DHV + N K + F D++ R G+RL+ +D V+ + Sbjct: 644 IGVGIVNDIDHVVLATRNGKAMRFESDEVRATGRATQGVIGIRLREGEDDA---VVSMAL 700 Query: 706 CEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKG 743 G D A SE LGKR VG KG Sbjct: 701 VPGG---DEASELLAVSEC----GLGKRTPVGDYPAKG 731 >gi|255021281|ref|ZP_05293330.1| DNA gyrase subunit A [Acidithiobacillus caldus ATCC 51756] gi|254969292|gb|EET26805.1| DNA gyrase subunit A [Acidithiobacillus caldus ATCC 51756] Length = 847 Score = 395 bits (1016), Expect = e-107, Method: Compositional matrix adjust. Identities = 239/631 (37%), Positives = 360/631 (57%), Gaps = 59/631 (9%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 VSL + + YL YA+S I RA+PD RDG KPVHRR+++AM EMG D+ +KKSAR+V Sbjct: 11 VSLEKEMRQSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMHEMGNDWNKPYKKSARVV 70 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGD +VYD++VR+AQ F RYPLI GQGNFG++DGDS AA RYTE RM ++ Sbjct: 71 GDVIGKYHPHGDVAVYDTIVRMAQDFSMRYPLIDGQGNFGSVDGDSPAAMRYTEVRMARI 130 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A +L ++ + VDF Y+E++ EP V P++ PNLL NG++GIAVGMAT+IP HN+ EI Sbjct: 131 AHEMLADIERETVDFGPNYDEKEVEPQVLPARIPNLLINGSAGIAVGMATNIPPHNLTEI 190 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 A +AL+D+ ++ +L + GPDFPT GI++ E +E+YR GRG +RAR +E Sbjct: 191 LNACIALVDDDDLPDSELFRLVPGPDFPTAGILL-GNEGAIEAYRSGRGRVVMRARAEIE 249 Query: 260 -EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318 + G I V+E+PYQV K++LIE+IAE++ KR+ + D+RDES + + R Sbjct: 250 TDAKSGRQTIAVSELPYQVNKAKLIERIAEMVKEKRLDGISDLRDESDKSGMRIAIELKR 309 Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378 + ++++ +++ + +++ F +NM L G PQ + L LK +L HRREV+ RRS F Sbjct: 310 DANAEVVLNNLYQHTALQSVFNINMVALLDG-APQTLGLRDALKAFLRHRREVVTRRSIF 368 Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP------------KPVMVSR------ 420 ++ R IL+GL +A +N+D +IA+IR P +P +V+ Sbjct: 369 DLKKARDRAHILEGLAVALVNLDPLIALIRAAASPAEAKAQMLARVWEPGLVAALLAERG 428 Query: 421 ----------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQ 470 + L+E Q AIL+LRL L LE+ +I+ E LL ++ +L S + Sbjct: 429 EPSAGLQADGYHLSEAQAQAILDLRLHRLTGLEQDKIREEYLGLLERIRELLEILGSDAR 488 Query: 471 QWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATL-QQAMIEKEPITVVISNRGW 529 I E+ +++ + + RR+ AD + + +I +E + V ++ G+ Sbjct: 489 LMAVIRAELVAIRDQYGDA-----RRSEIV----ADTGVIANEDLIAEENMVVTFTHAGY 539 Query: 530 IRSLKSHSVDLS--------ALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLP 576 I++ + + A KE D ++ A T +L S G K Y LP Sbjct: 540 IKAQPVTTFNAQRRGGRGKVATTTKEEDFVERMFCASTHATVLFFSNLGKVFWQKVYQLP 599 Query: 577 AGNLLSGR-GHGEAIQLLIDLNHNQDIVTAF 606 SGR G+ I L+ L ++ I T Sbjct: 600 Q----SGRSARGKPIVNLLSLAPSEGITTVL 626 >gi|326406661|gb|ADZ63732.1| DNA gyrase subunit A [Lactococcus lactis subsp. lactis CV56] Length = 836 Score = 395 bits (1016), Expect = e-107, Method: Compositional matrix adjust. Identities = 266/757 (35%), Positives = 420/757 (55%), Gaps = 47/757 (6%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 ++NV V+L ++ + YA+S I RA+PD+RDG KPVHRRI++ M+E+G K Sbjct: 10 DKNVINVNLVEEMKTSFRDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGNTPDKPHK 69 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSARIVGEV+GK HPHGD S+Y+++VR+AQ + R+ L G GNFG++DGD AAA RYTE Sbjct: 70 KSARIVGEVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLADGHGNFGSMDGDRAAAMRYTE 129 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 AR++++A +L+ ++++ VDF D ++ + EP+V P++FPNLL NGT+GIAVGMAT+IP Sbjct: 130 ARLSKIAMEMLRDINKNTVDFMDNFDGTEREPLVLPARFPNLLVNGTTGIAVGMATNIPP 189 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E +A L++NPE S+ L+ I GPDFPTG +++ + I +Y G+G +R Sbjct: 190 HNLGETIDAVDMLMENPEASVTDLMSVIPGPDFPTGALVM-GKSGIRRAYETGKGSITLR 248 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312 A+ +EE+ G IVVTE+PY V K+RL+E I L KRI L +RDES E +R+V Sbjct: 249 AKTHIEEMAGGKERIVVTELPYMVNKARLVEHIVRLNHEKRIEGLTAVRDESNREGIRVV 308 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 + + R L +++ ++F L+ ++T F NM + G +P+++ L IL +++ H+ EV+ Sbjct: 309 IEVR-RDLSAHVILNNLFKLTSLQTSFGFNMLAIEKG-IPKILSLKEILVDYIEHQIEVV 366 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVD 429 RR++F + R IL+GL IA NID II IIR + M+ F L+E Q Sbjct: 367 ERRTAFDKARAEARAHILEGLRIALDNIDRIITIIRESQTDAIAQKTMMDEFLLSEKQSQ 426 Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489 AIL++RLR L LE +I++E +L+A + +L ++ I E+ EVK F+ Sbjct: 427 AILDMRLRRLTGLERDKIEAEYQDLVALIADLADILAKPERVKKIIREELEEVKRKFAD- 485 Query: 490 TDLGRRRTTFC--EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------D 539 +RRT EV + +IE+E + + +SN+G+I+ L + Sbjct: 486 ----KRRTELLVGEVL----TLEDEDLIEEEDVLITLSNKGYIKRLANDEFRAQNRGGRG 537 Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS-GR-GHGEAIQLLIDLN 597 + + + D ++ + T D +L + G+ Y + + GR G I L+ L+ Sbjct: 538 VQGMGMSDDDFVQHLVSTSTHDHLLFFTNLGRVYRMKGYEIPEYGRTAKGLPIVNLLKLD 597 Query: 598 HNQDIVTAFVY--DSTCKLLVVSSKGNAFIVEESEIIANTR-KGKTFLKVSSEEKMKLVV 654 + I T D K L +++ + +N R G LK+ +++ V+ Sbjct: 598 DGEKIATIINVDRDQAAKYLFFTTRNGIVKRTSTSQFSNIRTNGLKALKLRDGDELINVL 657 Query: 655 KVTGDHVAVVGENRKLLI-FSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712 + +G+ ++G + + F + +M R GV+ + ++G D + G + I Sbjct: 658 RTSGEDEVIIGTHLGYSVRFKGAVVRDMGRAAAGVKGVNLREG---DYVV-----GTSRI 709 Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGK 749 D + SEN LGKR KG R GK Sbjct: 710 DDSQEVLVISEN----GLGKRTQASEYPTKG--RGGK 740 >gi|114331560|ref|YP_747782.1| DNA gyrase subunit A [Nitrosomonas eutropha C91] gi|114308574|gb|ABI59817.1| DNA gyrase subunit A [Nitrosomonas eutropha C91] Length = 848 Score = 395 bits (1016), Expect = e-107, Method: Compositional matrix adjust. Identities = 270/793 (34%), Positives = 410/793 (51%), Gaps = 73/793 (9%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 VSL ++ YL YA+S I RA+PD+RDG KPVHRR+++AM E+ D+ +KKSARIV Sbjct: 11 VSLEDEMKRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELSNDWNRPYKKSARIV 70 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGD +VYD++VR+AQPF RY LI GQGNFG+IDGD+AAA RYTE RM+++ Sbjct: 71 GDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLIDGQGNFGSIDGDNAAAMRYTEIRMSRI 130 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A +L +D++ VDF Y+ + EP++ P+K PNLL NG+SGIAVGMAT+IP HN+ E+ Sbjct: 131 AHELLADLDKNTVDFGPNYDGSEQEPLILPAKIPNLLINGSSGIAVGMATNIPPHNISEV 190 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 +A L L+ +P+I I L+ I PDFPT GII I + Y+ GRG +RAR E Sbjct: 191 IDACLLLLSDPDIDIAGLMACIPAPDFPTAGIIY-GISGIKDGYQTGRGRVIMRARTHFE 249 Query: 260 EVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318 E+ +G+ I++ E+PYQV K+ L+ +I EL+ KRI + D+RDES + V+ R Sbjct: 250 ELDKGNRHSIIIDELPYQVNKANLLVRIGELVRDKRIEGISDLRDESDKSGMRVVIELKR 309 Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378 P++++ +++ + M+ F +NM L G+ P+++ L +L +L HRREV+ RR+ F Sbjct: 310 GEVPEVILNNLYKETQMQDTFGINMVALVDGQ-PRLLNLKQMLDYFLRHRREVITRRTVF 368 Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR------------------ 420 ++ R +L+GL +A N+DEIIA+I+ P P R Sbjct: 369 ELRKARERGHLLEGLAVALSNVDEIIALIKA--APTPAEAKRGLMARTWRSSLVEEMLRR 426 Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457 + L++ Q AIL+LRL+ L LE+ +I SE +L Sbjct: 427 AMIDAAAFRPETLATGFGMSNQEYRLSDAQAQAILDLRLQRLTGLEQEKIVSEYKEIL-- 484 Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517 +KI LLN A I E+ I + G R + + D +T + +I Sbjct: 485 -DKIRDLLNMLANSERITAIIIEELTAIKGQ---FGDPRRSEVVIDAQDLST--EDLITP 538 Query: 518 EPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569 + V +S+ G+I+S K A+ +E D + A+T D IL S+ Sbjct: 539 TDMVVTLSHAGYIKSQLLDDYQAQKRGGRGKQAITTREDDFIDNLFIANTHDFILCFSSL 598 Query: 570 GKAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAF 624 G+ Y + N+ G G I L+ L ++ I +D T + + ++ G Sbjct: 599 GRVYWIKVYNVPQGSRTSRGRPINNLVPLEQHEKINAVLPVKSFDDTRYVFMATAGGTVK 658 Query: 625 IVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQI-PEMS 682 SE G + + + + V G H V + + K + F + + P Sbjct: 659 KTPLSEFSRPRTNGIIAVALDEGDYLIGVALTEGKHDVMLFSDAGKAMRFDENDVRPTGR 718 Query: 683 RGKGVRLQSYKDGGISDVICFKIC--EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLV 740 +GVR K G VI + E +T + + Y + + RG G + Sbjct: 719 NARGVR--GMKLGAEQKVISLLVADSENMTVLTATENGYGKRTSITEYTRHNRGTQGMIA 776 Query: 741 PKGFPRSGKFLSS 753 R+GK +++ Sbjct: 777 INTNKRNGKVVAA 789 >gi|218441567|ref|YP_002379896.1| DNA gyrase subunit A [Cyanothece sp. PCC 7424] gi|218174295|gb|ACK73028.1| DNA gyrase, A subunit [Cyanothece sp. PCC 7424] Length = 853 Score = 395 bits (1016), Expect = e-107, Method: Compositional matrix adjust. Identities = 255/717 (35%), Positives = 395/717 (55%), Gaps = 39/717 (5%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 E + L + + YL YA+S I RA+PD RDG KPVHRRI+ AM E+GL F+K Sbjct: 6 ERIIPTDLSSEMSQSYLEYAMSVIVGRALPDARDGLKPVHRRILFAMYELGLTPDRPFRK 65 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 AR+VGEV+GK HPHGD +VYD+LVR+AQ F R PLI G GNFG+ID D AA RYTE+ Sbjct: 66 CARVVGEVLGKYHPHGDTAVYDALVRMAQNFSMRDPLIEGHGNFGSIDNDPPAAMRYTES 125 Query: 135 RMTQVA-ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 R+ ++ +L+ ++ + VDF D ++ EP+V P++ P LL NG+SGIAVGMAT+IP Sbjct: 126 RLQNLSMNALLRDIEAETVDFIDNFDGSQQEPIVLPARIPQLLLNGSSGIAVGMATNIPP 185 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E+ + A+A+I NPEI+ +L++YI GPDFPTG I+ R I ++Y GRG +R Sbjct: 186 HNLGELVDGAIAMIHNPEITNTELMKYIPGPDFPTGAQIL-GRSGIKDAYTNGRGSITMR 244 Query: 254 ARWCVEEV---GRGSW-CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309 +E + GR I+VTE+PYQ K+ LIEKIAEL+ KRI + DIRDES D Sbjct: 245 GVAQIETIQQRGRPEREAIIVTELPYQTNKAALIEKIAELVNDKRIDGIADIRDESDRDG 304 Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369 ++ R P +++ +++ + ++ F NM L G PQV+ L L+ +L R Sbjct: 305 MRIVIELKRDAYPRVVLNNLYKQTPIQANFGANMLALVNGE-PQVLTLKDFLEVFLDFRV 363 Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTEN 426 EV+ RR+++ ++ + R +L+GLL+A N+D II +IR + K +V +F L+E Sbjct: 364 EVITRRTNYELRKAEERDHVLQGLLVALANLDAIIQLIRHAADTATAKRELVDQFGLSEV 423 Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486 Q DAIL ++LR L LE +I++E + LL + + +L ++ + I E+ ++ Sbjct: 424 QADAILQMQLRRLTALESEKIQAEHEELLQKITDLRDILERRERVDHIIEEELNQL---- 479 Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL------ 540 K+T RRT E+ + D + +I E ++++ +G+I+ + + Sbjct: 480 -KTTHATPRRT---EIIQEDGELIDLDLIANEQAVILLTEQGYIKRMPVSTFGQQSRATR 535 Query: 541 --SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDL 596 SA KE D ++ L D IL S G Y L A + S G I ++ + Sbjct: 536 GKSAAKIKEDDGVEHFLSCCDHDYILFFSDRGVVYVLGAYQIPSSSRTARGVPIVQMLPI 595 Query: 597 NHNQDIVTAFV---YDSTCKLLVVSSKG---NAFIVEESEIIANTRKGKTFLKVSSEEKM 650 N+ I + + C L++++ +G + S I AN G + +S +++ Sbjct: 596 PKNEKITSMLAVSEFSEDCYLIMLTRQGYIKKTVLSAYSNIRAN---GLIAITLSEGDQL 652 Query: 651 KLVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSRGKGVR-LQSYKDGGISDVICFKI 705 + V + ++G + + I F D G+ R ++S K G ++I I Sbjct: 653 RWVRLAREEDSIIIGTRKGMAIHFKADSEQLRPTGRTARGVKSMKLKGTDEIISVDI 709 >gi|261414774|ref|YP_003248457.1| DNA gyrase, A subunit [Fibrobacter succinogenes subsp. succinogenes S85] gi|284018092|sp|P35810|GYRA_FIBSS RecName: Full=DNA gyrase subunit A gi|261371230|gb|ACX73975.1| DNA gyrase, A subunit [Fibrobacter succinogenes subsp. succinogenes S85] Length = 903 Score = 395 bits (1015), Expect = e-107, Method: Compositional matrix adjust. Identities = 227/593 (38%), Positives = 355/593 (59%), Gaps = 30/593 (5%) Query: 26 LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85 +++ YL Y++S I RA+PD RDGFKPVHRR++++M ++G+ KSARIVG+VIGK Sbjct: 19 MQDCYLRYSMSVIVARALPDARDGFKPVHRRVMYSMHKLGVVPNKGTVKSARIVGDVIGK 78 Query: 86 LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145 HPHGD +VYD+L R+AQ F RYPL+ GQGNFG+IDGDS AA RYTEA+M + L+L+ Sbjct: 79 YHPHGDVAVYDTLARMAQDFSLRYPLVFGQGNFGSIDGDSPAAMRYTEAKMNNLGALMLE 138 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 ++++ VD Y+E EP+V PS PN++ NGTSGIAVGMAT++ HN++E+ A A Sbjct: 139 DLEKETVDMGPNYDESLEEPLVLPSALPNMIVNGTSGIAVGMATNMAPHNLREVGAAIHA 198 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265 L +NP+++ E L+EY+ GPDFPTG I+ R I E+Y G G RVRAR +E +G Sbjct: 199 LAENPDLTGEDLMEYVKGPDFPTGAIVC-GRSGIREAYLTGHGRVRVRARTEIETDAKGK 257 Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325 I+VTEIPY V K+ L +KIA+L+ KRI + DIRDES+ D+RIV+ + R +++ Sbjct: 258 PRIIVTEIPYMVNKAELCKKIADLVRDKRIDGITDIRDESSRDIRIVIELR-RDAVGEVV 316 Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385 + ++F + ++T F + N+ + +P+++ L +L+ ++ HR +V+ R + F ++ Sbjct: 317 LNNLFKYTQLQTTFSI-YNLALVNNLPKLLTLKDLLQVYIDHRLDVITRATQFDLKKAAA 375 Query: 386 RVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAILNLRLRSLRKL 442 R+ I++GL IA NIDE++ IIR K + RFSL E Q AI+++RL L L Sbjct: 376 RLHIIEGLRIATQNIDEVVKIIRQSKTTEIAKQSLQDRFSLDEIQSQAIVDMRLAQLVGL 435 Query: 443 EEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEV 502 ++++E + L+A + +L +++ ++A ++++ + K D RRTT E Sbjct: 436 NIEKLEAEYNELIATVADLKDIL---EKRERRVAIMLQKLDAVVDKYGD--ERRTTIGE- 489 Query: 503 SRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD--------LSALHFKEGDSLKIA 554 A + + +I +E + +S G+IR L + + K+ D+++ Sbjct: 490 --AIDDSDDEDLIAEEEQVITLSKEGYIRRLPIDTFKAQNRGGKGIIGAGLKDEDNVEQI 547 Query: 555 LHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602 A T +L+ + G K Y LP G + G G I + L + + Sbjct: 548 FTASTHSYLLVFTNKGRVYWTKVYRLPEG---ARNGKGRPIVNFVALTEGEKV 597 >gi|170016364|ref|YP_001727283.1| DNA gyrase, A subunit [Leuconostoc citreum KM20] gi|169803221|gb|ACA81839.1| DNA gyrase, A subunit [Leuconostoc citreum KM20] Length = 851 Score = 395 bits (1015), Expect = e-107, Method: Compositional matrix adjust. Identities = 219/570 (38%), Positives = 344/570 (60%), Gaps = 20/570 (3%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 ++ +L ++ +L+YA+S I RA+PD+RDG KPVHRRI+++M E G KKSA Sbjct: 9 IRNANLSEQMKTSFLSYAMSVIVARALPDVRDGMKPVHRRILYSMIEQGNTPDKPHKKSA 68 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 RIVG+V+GK HPHGD ++Y+S+VR+AQPF R+ L+ G GNFG++DGDSAAA RYTEAR+ Sbjct: 69 RIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRHMLVDGHGNFGSVDGDSAAAMRYTEARL 128 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 ++VA +++ +++D V+F Y+ E+ EP V PS+FPNLL NG +GIAVGMAT+IP+HN+ Sbjct: 129 SKVAMEMVRDLNKDTVNFVPNYDGEEREPEVLPSRFPNLLVNGATGIAVGMATNIPTHNL 188 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ A L++NP+ + L++ + GPDFPTGGI++ + I +Y GRG VRA+ Sbjct: 189 GEVISALHVLMNNPDATTTDLMDVLPGPDFPTGGIVM-GKSGIRRAYETGRGRVTVRAKV 247 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316 +E+ G I+VTE+PY V K+RLIE+I+EL KRI + IRDES D + Sbjct: 248 DIEQTKTGKEQIIVTELPYAVNKARLIERISELARDKRIEGITGIRDESDRDGLRISIDV 307 Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376 R +++ +++ + ++T F NM ++ G+ PQ M L IL +L H+REV+ RR+ Sbjct: 308 RRDTSASVILNNLYKETLLQTNFSFNMLAINGGK-PQTMSLKDILVAYLTHQREVIRRRT 366 Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLTENQVDAILN 433 +F +Q R IL+GL IA +ID II IIR+ ++ K ++ ++L++ Q AIL+ Sbjct: 367 AFDLQKAQARAHILEGLRIALDHIDAIINIIRSSATSEEAKTRLIDGYALSDKQAQAILD 426 Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493 +RL L LE +I+ E L+A + +L + +++ +QI + E+ EI +K D Sbjct: 427 MRLVRLTGLERDKIEDEYQKLVALIADLKDIL-AHQERVDQIIYD--ELLEIQTKFGDAR 483 Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD--------LSALHF 545 R +V+ + L + + V ++ G+I+ + + ++ Sbjct: 484 RTELQVGDVTNLEDEDLIEEED----VIVTLTRNGYIKRVPQAEFKAQNRGGRGVQGMNV 539 Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTL 575 + D + L T D +L + GK Y + Sbjct: 540 NDEDFVDQMLATSTHDTLLFFTNKGKVYRM 569 >gi|238922438|ref|YP_002935951.1| DNA gyrase, A subunit [Eubacterium rectale ATCC 33656] gi|238874110|gb|ACR73817.1| DNA gyrase, A subunit [Eubacterium rectale ATCC 33656] Length = 852 Score = 395 bits (1015), Expect = e-107, Method: Compositional matrix adjust. Identities = 241/668 (36%), Positives = 398/668 (59%), Gaps = 41/668 (6%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 + ++ V L+ +E Y+ YA+S I RA+PD+RDG KPV RR++++M E+G +K Sbjct: 7 DQIQQVDLKKTMESSYIDYAMSVIASRALPDVRDGLKPVQRRVLYSMVELGNTPDKPHRK 66 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 ARIVG+ +GK HPHGD S+Y +LV +AQ + RY L+ G GNFG++DGD AAA RYTEA Sbjct: 67 CARIVGDTMGKYHPHGDSSIYGALVNMAQDWSMRYTLVDGHGNFGSVDGDGAAAMRYTEA 126 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 R+++++ +++ + ++ VDF ++E + EP V PS++PNLL NGT+GIAVGMAT+IP H Sbjct: 127 RLSKISLELIKDIGKNTVDFEPNFDETEKEPTVLPSRYPNLLVNGTTGIAVGMATNIPPH 186 Query: 195 NVQEICEAALALIDN----PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250 N++E+ A + LIDN E +I++L++ + GPDFPTGGII+ + I E+YR GRG Sbjct: 187 NLREVVNAVVRLIDNDIEDKETTIDELIDVVKGPDFPTGGIILGT-SGIKEAYRTGRGKI 245 Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDV 309 RVRA +E + G IVVTE+PY V K+RLIEKIAEL K+I + D+RDE++ E + Sbjct: 246 RVRAVTNIEPMENGKNRIVVTELPYNVNKARLIEKIAELHKDKKIDGITDLRDETSREGM 305 Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369 RIV+ + R ++P +++ +F + ++ F + +N+ + P+V+ L +L +L H++ Sbjct: 306 RIVVELR-RDVNPSVVLNLLFKHTQLQDTFGV-INLALVNGEPKVLNLYDLLNYYLIHQK 363 Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTEN 426 +V+ RR+ F + + R I++GL+IA NIDE+I+IIR+ + K ++ RF LT+ Sbjct: 364 DVVTRRTKFDLDKAEARAHIVEGLIIAQDNIDEVISIIRSSQTTQQAKTRLMERFGLTDE 423 Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486 Q AI+++RLR+L LE ++++E L+A+ ++ ++L K ++ IRE EI Sbjct: 424 QSQAIVDMRLRALTGLEREKLEAEYKELMAQIAQLKAILADEK----KLLGVIRE--EII 477 Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD------- 539 + + G R T E+ + + +I + + ++ G+I+ + + + Sbjct: 478 AIADKYGDDRKT--EIGYDEYDMSMEDLIPETNTVITMTKVGYIKRMSTDNFKAQHRGGK 535 Query: 540 -LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDL 596 + + E D + L + ++ + G+ Y + A + S G AI LI L Sbjct: 536 GIKGMETIEDDYIVEMLMTTSHHYLMFFTNTGRVYRIKAYEIPEASRTSRGTAIINLIPL 595 Query: 597 NHNQDIVTAFV----YDSTCKLLVVSSKGNAFIVEESEI--IANTRK-GKTFLKVSSEEK 649 ++ I TA + Y+ L + + G IV+++ I N RK G + + ++K Sbjct: 596 QPDEKI-TAMIPIKEYEDDKYLFMATRNG---IVKKTPIKDYENIRKNGLAAINLREDDK 651 Query: 650 MKLVVKVT 657 + + VKVT Sbjct: 652 L-IEVKVT 658 >gi|156888527|gb|ABU96668.1| DNA gyrase subunit A [Streptococcus dysgalactiae subsp. equisimilis] Length = 834 Score = 395 bits (1015), Expect = e-107, Method: Compositional matrix adjust. Identities = 224/580 (38%), Positives = 354/580 (61%), Gaps = 26/580 (4%) Query: 12 LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71 + + N+ V+L ++ ++ YA+S I RA+PD+RDG KPVHRRI++ M+E+G+ Sbjct: 1 MQDRNLIDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVMPDKP 60 Query: 72 FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131 KKSARI G+V+GK HPHGD S+Y ++VR+AQ + R+ L+ G GNFG++DGD AAA RY Sbjct: 61 HKKSARITGDVMGKYHPHGDSSIYKAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRY 120 Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191 TEARM+++A +L+ ++++ VDF+D Y+ + EP+V P++FPNLL NG +GIAVGMAT+I Sbjct: 121 TEARMSKIALELLRDINKNTVDFQDNYDGSEREPLVLPARFPNLLVNGATGIAVGMATNI 180 Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251 P HN+ E +A +++NP+ + L+E I GPDFPTG +++ R I +Y G+G Sbjct: 181 PPHNLAESIDAVKMVMENPDCTTRDLMEVIPGPDFPTGALVM-GRSGIHRAYDTGKGSIV 239 Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVR 310 +R+R +E G IVVTE PY V K+++ E I L KRI + +RDES+ E VR Sbjct: 240 LRSRTEIETTKTGRERIVVTEFPYGVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGVR 299 Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370 V+ + R ++++ ++F L+ ++T F NM + G VP+++ L I+ +++H++E Sbjct: 300 FVIEIR-RDASANVILNNLFKLTSLQTNFSFNMLAIENG-VPKILSLRQIIDNYISHQKE 357 Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQ 427 V+ RR+ F + R IL+GLLIA ++DE+IAIIRN + + ++SRF+L+E Q Sbjct: 358 VITRRTQFDKNKAEARAHILEGLLIALDHLDEVIAIIRNSETDVIAQAELMSRFNLSERQ 417 Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487 AIL++RLR L LE +I+SE D LLA + +L ++ I E+ E+K ++ Sbjct: 418 SQAILDMRLRRLTGLERDKIQSEYDELLALIADLADILAKPERVVTIIKEEMDEIKRKYA 477 Query: 488 KSTDLGRRRTTFC--EVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHS 537 RRT EV + + +IE+E + + +SN+G+I+ L K Sbjct: 478 NP-----RRTELMIGEVL----SLEDEDLIEEEDVLITLSNKGYIKRLAQDEFRAQKRGG 528 Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPA 577 + + D ++ + T D +L + G+ Y L A Sbjct: 529 RGVQGTGVNDDDFVRELVSTSTHDTLLFFTNFGRVYRLKA 568 >gi|126729838|ref|ZP_01745651.1| DNA gyrase subunit A [Sagittula stellata E-37] gi|126709957|gb|EBA09010.1| DNA gyrase subunit A [Sagittula stellata E-37] Length = 911 Score = 395 bits (1015), Expect = e-107, Method: Compositional matrix adjust. Identities = 245/677 (36%), Positives = 382/677 (56%), Gaps = 57/677 (8%) Query: 19 AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78 ++S+ ++ YL YA+S I RAIPDLRDG KPVHRRI+ AM E G +++KSA+ Sbjct: 22 SISIENEMKSSYLDYAMSVIVSRAIPDLRDGLKPVHRRILFAMHEGGYTPDKSYRKSAKS 81 Query: 79 VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138 VGEV+G HPHGD ++YD+LVR+AQ F PLI GQGNFG++DGD AA RYTE+R+ + Sbjct: 82 VGEVMGNYHPHGDSAIYDALVRMAQDFSMSLPLIDGQGNFGSMDGDPPAAMRYTESRLAK 141 Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198 A +L +D+D VDF+D Y+ ++ EP V P++FPN+L NG GIAVGMAT IP HN+ E Sbjct: 142 SALQLLSDIDKDTVDFQDNYDGKEREPTVLPARFPNVLVNGAEGIAVGMATRIPPHNLGE 201 Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258 + +A LAL+DNP++S E L+E++ GPDFPTGG+++ R ++Y GRG +RA V Sbjct: 202 VIDATLALMDNPDLSSEDLMEWVKGPDFPTGGLML-GRSGARKAYLEGRGSVIIRAATTV 260 Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKN 317 EE+ + + IV++ IPYQV K+ +IE+IAE K+I + ++DES D VR+V+ K Sbjct: 261 EEIRKDRYAIVISAIPYQVNKATMIERIAEAARDKKIEGIAHVQDESDRDGVRVVVELK- 319 Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377 R ++++ ++ + M+T F NM L+ G+ P+ + L G L +L R +V+ RR++ Sbjct: 320 RDATAEVVLNQLYRFTPMQTSFGCNMLALNGGK-PEQLTLRGFLSAFLDFREDVIARRTA 378 Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE-DKPKP---VMVSR------------- 420 + ++ R +L GL +A N+DE++A IR+ D P+ +M R Sbjct: 379 YLLRKARERSHVLCGLAVAVSNVDEVVATIRSSADAPEARQRLMERRWPAQDILPYIALI 438 Query: 421 ------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSG 468 ++L+E Q AIL+LRL+ L ++ ++ EL++L A+ + +L+S Sbjct: 439 DDPTHKANEDGTYNLSETQARAILDLRLQRLTQIGVKEVTDELEDLAAKIKDYLEILSSR 498 Query: 469 KQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRG 528 ++ I E+ ++E F+ RRT + + + +IE+E + V ++ G Sbjct: 499 ERIMGIIREEMTAIREEFAVP-----RRTEIVDWA---GDMDDEDLIEREDMVVTVTAGG 550 Query: 529 WI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL 580 +I R+ K LS KE D + A+T ++L +TDG Y L L Sbjct: 551 YIKRTALADFRAQKRGGKGLSGGGLKEDDVVTTLFVANTHTQLLFFTTDGMVYKLKTWRL 610 Query: 581 -LSGR-GHGEAIQLLIDLNHNQDIVTAFVYD------STCKLLVVSSKGNAFIVEESEII 632 L GR G+AI ++ + I D +++ +SKG+ S+ Sbjct: 611 PLGGRTSKGKAIVNILPIPTGVSIAAIMPVDRDEDEWDDLQIVFATSKGSVRRNRLSDFT 670 Query: 633 ANTRKGKTFLKVSSEEK 649 R GK +K E++ Sbjct: 671 NVMRNGKIAMKFEGEDE 687 >gi|171463936|ref|YP_001798049.1| DNA gyrase, A subunit [Polynucleobacter necessarius subsp. necessarius STIR1] gi|171193474|gb|ACB44435.1| DNA gyrase, A subunit [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 902 Score = 395 bits (1015), Expect = e-107, Method: Compositional matrix adjust. Identities = 261/748 (34%), Positives = 404/748 (54%), Gaps = 89/748 (11%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 +SL + YL YA+S I RA+PD+RDG KPVHRR++ AM E+ D+ A+KKSARIV Sbjct: 11 ISLEDEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMYELNNDWNRAYKKSARIV 70 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGD +VYD++VR+AQ F RY L+ GQGNFG++DGD+AAA RYTE R+ ++ Sbjct: 71 GDVIGKYHPHGDSAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRLRKI 130 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A +L +D++ VDF Y+ + EP++ P+K PNLL NG+SGIAVGMAT+IP HN+ E+ Sbjct: 131 AHELLADLDKETVDFGPNYDGSEKEPLILPAKVPNLLINGSSGIAVGMATNIPPHNLDEV 190 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 A L ++ NPE +I++L+E I PDFPT GII + + E YR GRG +RA+ E Sbjct: 191 VTACLHVLHNPECTIDELIEIIPAPDFPTAGIIY-GVQRVREGYRTGRGRVVMRAKTHFE 249 Query: 260 EVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318 ++ +G+ I+V E+PYQV K L+E+IAEL+ K++ + D+RDES + V+ R Sbjct: 250 DLDKGTRQAIIVDELPYQVNKKNLLERIAELVNEKKVEGISDLRDESDKSGMRVVIELKR 309 Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378 P++++ +++ + ++ F +NM L + P+++ L +L+ +L HRREV+ RR+ F Sbjct: 310 GEVPEVVLNNLYKSTQLQDNFGMNMVAL-VDNQPRLLNLKQMLEYFLQHRREVVTRRTIF 368 Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAII------------------------------- 407 ++ R L+GL +A NIDE IAII Sbjct: 369 ELRKARDRGHALEGLAVALANIDEFIAIIKAAANPVIAKQELMGKAWDSSMVREMLARAE 428 Query: 408 ------RNEDKPKPVM-------VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNL 454 RN +P+ ++ + L+++Q IL +RL+ L LE+ +I +E + Sbjct: 429 TDTPGGRNAYRPEGLLPEYGMQTTGLYRLSDSQAQEILQMRLQRLTGLEQDKIVNEYKEV 488 Query: 455 LAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS-KSTDLGRRRTTFCEVSRADKATLQQA 513 +AE + LL ++ I E++EV+ F D GRR +F EV+ + T + Sbjct: 489 MAEISDLLDLLAKPERVTQVIEAELKEVQSEFGVAGGDTGRR--SFIEVNATELFT--ED 544 Query: 514 MIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565 +I + + V +SN G++ R+ K A K D ++ A+T D IL Sbjct: 545 LITPQDLVVTLSNTGYMKSQPLSEYRAQKRGGRGKQAAATKNEDWIETLFVANTHDTILC 604 Query: 566 LSTDGKAYTL-----PAGNLLSGRG----------HGEAIQLLIDLNHNQDIVTAFVYDS 610 S G+ Y L P G+ S RG GE I +++ + QD +V+ + Sbjct: 605 FSDRGRMYWLKVWEVPQGSRTS-RGKPIVNMFPLIEGEKITVILPIKGYQD--NQYVFMA 661 Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT-GDH-VAVVGENR 668 T V ++ + F +N RK +E + +T G H V + + Sbjct: 662 TSLGTVKKTRLSDF--------SNPRKAGIIAVDLNENDFLVGAAITDGQHDVMLFSDAG 713 Query: 669 KLLIFSIDQIPEMSR-GKGVRLQSYKDG 695 K + F + + M R +GVR + +G Sbjct: 714 KAVRFDENDVRPMGRTARGVRGMNLGEG 741 >gi|323341106|ref|ZP_08081354.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus ruminis ATCC 25644] gi|323091527|gb|EFZ34151.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus ruminis ATCC 25644] Length = 835 Score = 395 bits (1015), Expect = e-107, Method: Compositional matrix adjust. Identities = 245/704 (34%), Positives = 400/704 (56%), Gaps = 72/704 (10%) Query: 30 YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89 +L YA+S I RA+PD+RDG KPVHRRI++ M+E+G+ +KKSARIVG+V+GK HPH Sbjct: 9 FLDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPYKKSARIVGDVMGKYHPH 68 Query: 90 GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDE 149 GD ++Y+S+VR+AQ F RY L+ G GNFG++DGD AAA RYTEARM+++A +L+ +++ Sbjct: 69 GDSAIYESMVRMAQDFSYRYLLVDGHGNFGSVDGDGAAAMRYTEARMSKIALEMLRDINK 128 Query: 150 DAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDN 209 D VDF+ Y+E + EPVV PS+FPNLL NG +GIAVGM T+IP HN++E+ L++N Sbjct: 129 DTVDFQPNYDETEREPVVLPSRFPNLLVNGATGIAVGMTTNIPPHNLREVISGLHLLMEN 188 Query: 210 PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIV 269 P+ + +L+E I GPDFPTG I++ + I ++Y G G +RA+ +EE G I+ Sbjct: 189 PDATTAELMEAIPGPDFPTGAIVM-GKSGIRKAYETGHGTVTLRAKVDIEEQSNGKSRII 247 Query: 270 VTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESI 329 V EIPY V K+ LI +IA+L K+I + DI DES + + R + P +++ ++ Sbjct: 248 VHEIPYMVNKANLITRIADLAREKKIDGITDINDESDREGMRITIDIRRDVSPSVVLNNL 307 Query: 330 FMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEI 389 + L+ M++ F NM + G PQV+ L IL+ +L H+ +V+ RR++F ++ R I Sbjct: 308 YKLTLMQSSFTFNMLAIVDG-TPQVLGLKQILQYYLKHQEDVIRRRTAFDLKKAQARAHI 366 Query: 390 LKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQ 446 L+GL IA +ID II+IIRN K +++ + L++ Q AIL++RL L LE + Sbjct: 367 LEGLKIALDHIDAIISIIRNSQSGEVAKDRLMNEYELSDKQAQAILDMRLVRLTGLEREK 426 Query: 447 IKSE----------LDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496 + +E ++LA +E+++S+ I E+ E++E F G R Sbjct: 427 VDAEYKKTLEAIADFKDILAHEERVNSI----------IYQELLEIQEKF------GDDR 470 Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD--------LSALHFKEG 548 T V + + +IE+E + + +++ G+I+ L + + + + Sbjct: 471 RTELMVGEV-LSIEDEDLIEEENVVIALTHNGYIKRLPTSDFKTQRRGGRGVQGMGVHDD 529 Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTL---------------PAGNLLSGRGHGEAIQLL 593 D ++ + T D +L + GK Y + P NLL GE IQ + Sbjct: 530 DFIEHLITTSTHDEVLFFTNIGKVYRMKGYEVPEYGRAAKGIPVINLLD-LSEGEKIQTV 588 Query: 594 IDLNHNQDIVTAFVYDSTCKLLV----VSSKGNAFIVEESEIIANT-RKGKTFLKVS-SE 647 I+++ + + F++ +T + +V V+ GN + ++ + A T R+G L VS ++ Sbjct: 589 INVDPEKRNDSHFLFFTTVQGVVKRTSVTEFGN---IRKNGLKAITLREGDELLNVSITD 645 Query: 648 EKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQ 690 +++ G + EN ++ Q+ + G +G+RL+ Sbjct: 646 GNQNIIIGTHGGYAVSFSEN------AVRQMGRTASGVRGIRLR 683 >gi|299532465|ref|ZP_07045856.1| DNA gyrase subunit A [Comamonas testosteroni S44] gi|298719550|gb|EFI60516.1| DNA gyrase subunit A [Comamonas testosteroni S44] Length = 898 Score = 395 bits (1015), Expect = e-107, Method: Compositional matrix adjust. Identities = 238/619 (38%), Positives = 353/619 (57%), Gaps = 62/619 (10%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 +SL + YL YA+S I RA+PD RDG KPVHRR+++AM E+ D+ +KKSARIV Sbjct: 11 ISLEEEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMHELNNDWNRPYKKSARIV 70 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGD +VYD++VR+AQ F R+ L+ GQGNFG++DGDSAAA RYTE R++++ Sbjct: 71 GDVIGKYHPHGDSAVYDTIVRMAQDFSLRHMLVDGQGNFGSVDGDSAAAMRYTEIRLSKI 130 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A +L +D++ VDF Y+ +SEP+V PS+ PNLL NG+SGIAVGMAT+IP HN+ E+ Sbjct: 131 AHEMLGDIDKETVDFGPNYDGSESEPLVLPSRLPNLLVNGSSGIAVGMATNIPPHNLNEV 190 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 + L L+ NPE SI++L+E I PDFPT GII + E YR GRG +RA+ E Sbjct: 191 VDGCLHLLQNPEASIDELMEIIPAPDFPTAGIIY-GINGVKEGYRTGRGRVVMRAKCHFE 249 Query: 260 EVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318 ++ +G I+V E+PYQV K L E++AEL+ K+I + I+DES + ++ R Sbjct: 250 DIDKGQRQSIIVDELPYQVNKKTLQERMAELVHEKKIEGISHIQDESDKSGMRLVIELKR 309 Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378 P++++ +++ L+ ++ F +NM L G+ P++ L +++ +L HRREV+ RR+ F Sbjct: 310 GEVPEVVLNNLYKLTQLQDTFGMNMVALVNGQ-PKLCNLKDLIQVFLEHRREVVTRRTVF 368 Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV-----------------MVSR- 420 ++ R +L+GL +A NID+ IAIIRN P PV M++R Sbjct: 369 ELRKARDRGHVLEGLAVALANIDDFIAIIRNAPTP-PVAKAALMEKSWDSKLVREMLTRT 427 Query: 421 ----------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELD 452 + L+E Q IL +RL+ L LE+ +I +E Sbjct: 428 RTDGGVVNADDYRPEGLEVEFGMQQNGLYRLSETQAQEILQMRLQRLTGLEQDKIVAEYK 487 Query: 453 NLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ 512 ++++ E + +L ++ I E+ VK F +S G RR+T E S D +T + Sbjct: 488 DVMSVIEDLLDILAKPERVSIIIGEELNAVKAEFGQSKK-GERRST-VEYSAQDLST--E 543 Query: 513 AMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRIL 564 +I + V +S+ G+I RS K A KE D + A+T D +L Sbjct: 544 DLITPTDMVVTLSHTGYIKSQPLSEYRSQKRGGRGKQATATKEDDWIDQLFIANTHDYLL 603 Query: 565 LLSTDGKAYTLPAGNLLSG 583 S G+ Y L + SG Sbjct: 604 CFSNRGRMYWLKVWEVPSG 622 >gi|42521655|ref|NP_967035.1| DNA gyrase subunit A [Bdellovibrio bacteriovorus HD100] gi|39574185|emb|CAE77689.1| DNA gyrase subunit A [Bdellovibrio bacteriovorus HD100] Length = 827 Score = 395 bits (1015), Expect = e-107, Method: Compositional matrix adjust. Identities = 233/602 (38%), Positives = 353/602 (58%), Gaps = 31/602 (5%) Query: 10 NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69 N E+ V V + + YL Y++S I RA+PD+RDG KPVHRR++ A SEM Sbjct: 3 NNQEEKGVTLVDISKEMRGAYLQYSMSVIVGRALPDVRDGLKPVHRRVLFAQSEMNNRHN 62 Query: 70 AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129 + KSAR+VG+VIGK HPHGD SVYD++VR+AQ F RYPL GQGNFG+IDGDS AA Sbjct: 63 RPYLKSARVVGDVIGKYHPHGDASVYDTMVRMAQDFSLRYPLEDGQGNFGSIDGDSPAAM 122 Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189 RYTE R+T +AE +L ++++ V F Y++ P V PSKFPNLL NG++GIAVGMAT Sbjct: 123 RYTEIRLTALAEELLNDLEKETVSFGPNYDDSLLIPTVLPSKFPNLLVNGSAGIAVGMAT 182 Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249 +IP HN+ E+ + + LI NP+ IE L+++I GPDFPT G+I RE I+++Y+ GRG Sbjct: 183 NIPPHNLGEVIDGCIHLIGNPDCQIEDLMQHIKGPDFPTCGVIA-GREGILQAYKKGRGI 241 Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-ED 308 ++A + +V + I++TEIPYQV K++LIE +A+L+ K+I + DIRDES+ E Sbjct: 242 VTIKAVAEIVQV-KDREEIIITEIPYQVNKAKLIESMADLVRDKQIEGISDIRDESSREG 300 Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368 +RIV+ K R + +++ ++ + M+T F + M L P L G+L+ ++ HR Sbjct: 301 MRIVVVLK-RGENASVILNRLYKYTQMQTSFGIIMLALDAKNQPVTFDLKGMLEAFVDHR 359 Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTE 425 R+V+ +R F ++ R IL+GL A +I+E+I IR + + ++S+F +E Sbjct: 360 RDVVTKRCIFELKKAQERAHILEGLKKALDHIEEVIKTIRASKEANAAREALMSKFEFSE 419 Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485 Q AIL +RL+ L LE +I +EL L+ + + + +L+ ++ + I E+ +VK+ Sbjct: 420 RQAVAILEMRLQRLTGLERDKIVAELAELMKQIDWLKFVLSDVREIYKIIVSELEDVKKR 479 Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSL--------KSH 536 ++ RRT D + L+ + +I E + V ++N G I+ + K Sbjct: 480 YADP-----RRTQIT----GDLSDLEDEDLIADEQMVVTVTNTGLIKRIPVEEYRVQKRG 530 Query: 537 SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY-----TLPAGNLLS-GRGHGEAI 590 L + KE D + A T +L+ + GK Y LP G S G+ + Sbjct: 531 GKGLKGMETKEEDYVTDIFSASTKTMLLVFTDKGKVYWCKVHRLPLGTRTSKGKSLANVV 590 Query: 591 QL 592 QL Sbjct: 591 QL 592 >gi|325678531|ref|ZP_08158142.1| DNA gyrase, A subunit [Ruminococcus albus 8] gi|324109750|gb|EGC03955.1| DNA gyrase, A subunit [Ruminococcus albus 8] Length = 838 Score = 395 bits (1015), Expect = e-107, Method: Compositional matrix adjust. Identities = 225/628 (35%), Positives = 371/628 (59%), Gaps = 34/628 (5%) Query: 11 TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70 L++++V+ + ++E +L Y+++ I RA+PD+RDG KPVHRRI++ M E GL Sbjct: 5 NLIDQDVEHI-----MKESFLQYSMAVIVSRALPDVRDGLKPVHRRILYTMHENGLTPDQ 59 Query: 71 AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130 A++K A VG V+G+ HPHGD SVYD+LVRLAQ F RYPL+ G GNFG++DGD AAYR Sbjct: 60 AYRKCADTVGSVLGRYHPHGDASVYDALVRLAQSFSLRYPLVDGHGNFGSVDGDPPAAYR 119 Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190 YTEARM +++ +L + +D VDF+ Y++ EPVV PS+FPN+L NG+ GIAVGMAT+ Sbjct: 120 YTEARMAKMSLNMLTDIKKDTVDFQPNYDDRLQEPVVLPSRFPNILCNGSVGIAVGMATN 179 Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250 IP HN+ E+ E ++ NP+ ++++L++ I GPDFPTGGII+ R I +Y GRG Sbjct: 180 IPPHNLHEVIEGMKIVMQNPDCTLDELMQAIKGPDFPTGGIIM-GRSGIRAAYGTGRGKI 238 Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310 +R++ +EE+ +G CI+VTEIPY V K+RL+E IA L+ KRI + D+RDE+ D Sbjct: 239 ILRSKTSIEEI-KGRNCIIVTEIPYMVNKARLVESIAGLVKDKRIDGIHDLRDETGRDGM 297 Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370 ++ + + +++ +F L+ ++ + + L G VP+V+ L IL+E++ + + Sbjct: 298 RIVIELKKDANAQVVLNKLFTLTQLQDSVGVILLALVKG-VPKVLTLKQILQEYIDFQVD 356 Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAII---RNEDKPKPVMVSRFSLTENQ 427 V+ RR+ F ++ R IL+GL+IA NIDE+I I+ +N + K +++RF L++ Q Sbjct: 357 VIRRRTEFDLKKAKEREHILQGLVIALDNIDEVIEIMKTSKNIPEGKQRLMTRFGLSDIQ 416 Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487 + I + L L +E +I EL+ + A+ + +L + ++ + I E+ ++E + Sbjct: 417 AEHIAQMTLGRLTGMERQKILDELEEITAKVADYEDILANHQRVLDIIIEEVEAIQEKYG 476 Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSVD 539 RRT VS + +I E V +N G+I+ + Sbjct: 477 DE-----RRTQIENVS---GEVDIEDLIPVEESVVTYTNVGYIKRMPISVYKAQNRGGKG 528 Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLN 597 ++ + +E D + + D IL ++T G+AY + L G G I+ L++L+ Sbjct: 529 VTGMKQREDDCVTEMSVCSSHDNILFITTKGQAYKMKCYELPEGSKASRGVNIKNLLELS 588 Query: 598 HNQDIVTAFV----YDSTCKLLVVSSKG 621 + +++ A + +D +++V+ +G Sbjct: 589 -DDNLIAAMIKVEDFDDDKYIVMVTKRG 615 >gi|311104909|ref|YP_003977762.1| DNA gyrase subunit A [Achromobacter xylosoxidans A8] gi|310759598|gb|ADP15047.1| DNA gyrase, A subunit [Achromobacter xylosoxidans A8] Length = 889 Score = 395 bits (1014), Expect = e-107, Method: Compositional matrix adjust. Identities = 234/610 (38%), Positives = 345/610 (56%), Gaps = 61/610 (10%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 VSL + YL YA+S I RA+PD+RDG KPVHRR+++AM E+ D+ A+KKSARIV Sbjct: 11 VSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNRAYKKSARIV 70 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGDQSVYD++VR+AQ F RY L+ GQGNFG+IDGD+AAA RYTE R+ ++ Sbjct: 71 GDVIGKYHPHGDQSVYDTIVRMAQDFSMRYMLVDGQGNFGSIDGDNAAAMRYTEIRLAKI 130 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A +L +D++ VDF Y+ + EP++ PS+ PNLL NG+SGIAVGMAT+IP HN+QE+ Sbjct: 131 AHELLADIDQETVDFGPNYDGSEQEPLLLPSRLPNLLVNGSSGIAVGMATNIPPHNLQEV 190 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 + L + NP S+++L+E I PDFPTGGII + E YR GRG +RA+ E Sbjct: 191 VDGCLYCLRNPGCSVDELMELIPAPDFPTGGIIY-GMSGVREGYRTGRGRVIMRAKTHFE 249 Query: 260 EVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318 ++ +G+ IVV IPYQV K L E+IAEL+ K+I + DIRDES +D ++ R Sbjct: 250 DMEKGNRQAIVVDAIPYQVNKKTLQERIAELVNDKKIEGISDIRDESDKDGMRLVIELKR 309 Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378 P++++ +++ + ++ F +N+ L G+ P+++ L ++ +L HRREV+ RR+ F Sbjct: 310 GEVPEVVLNNLYKNTQLQDTFGMNLVALVDGQ-PRLLNLKQMIDYFLQHRREVVTRRTVF 368 Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV-----------------MVSR- 420 +++ R +L+GL +A NID+ IAII+ P PV M+SR Sbjct: 369 QLRKARERGHVLEGLAVALANIDDFIAIIKAAPTP-PVARQELMAKSWDSSLVREMLSRA 427 Query: 421 ---------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453 + L++ Q ILN+RL+ L LE+ +I E + Sbjct: 428 DGDTPGGRAAFRPDDLGTEFGLQGDGMYRLSDTQAQEILNMRLQRLTGLEQDKIVGEYKD 487 Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513 +++ + +L ++ I+ E++ +K FS RR + D L Sbjct: 488 IMSTIADLLDILARPERITTIISDELQAIKAEFSTGVKDTRRSDIELNATELDTEDL--- 544 Query: 514 MIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565 I + V +S+ G+I RS K A KE D + A+T D +L Sbjct: 545 -ITPTDMVVTLSHGGYIKSQPLSEYRSQKRGGRGKQATAMKENDWIDQLFIANTHDFLLC 603 Query: 566 LSTDGKAYTL 575 S G+ Y L Sbjct: 604 FSNRGRVYWL 613 >gi|156888523|gb|ABU96666.1| DNA gyrase subunit A [Streptococcus dysgalactiae subsp. equisimilis] Length = 834 Score = 395 bits (1014), Expect = e-107, Method: Compositional matrix adjust. Identities = 224/580 (38%), Positives = 355/580 (61%), Gaps = 26/580 (4%) Query: 12 LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71 + + N+ V+L ++ ++ YA+S I RA+PD+RDG KPVHRRI++ M+E+G+ Sbjct: 1 MQDRNLIDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVMPDKP 60 Query: 72 FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131 KKSARI G+V+GK HPHGD S+Y+++VR+AQ + R+ L+ G GNFG++DGD AAA RY Sbjct: 61 HKKSARITGDVMGKYHPHGDFSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRY 120 Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191 TEARM+++A +L+ ++++ VDF+D Y+ + EP+V P++FPNLL NG +GIAVGMAT+I Sbjct: 121 TEARMSKIALELLRDINKNTVDFQDNYDGSEREPLVLPARFPNLLVNGATGIAVGMATNI 180 Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251 P HN+ E +A +++NP+ + L+E I GPDFPTG +++ R I +Y G+G Sbjct: 181 PPHNLAESIDAVKMVMENPDCTTRDLMEVIPGPDFPTGALVM-GRSGIHRAYDTGKGSIV 239 Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVR 310 +R+R +E G IVVTE PY V K+++ E I L KRI + +RDES+ E VR Sbjct: 240 LRSRTEIETTKTGRERIVVTEFPYGVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGVR 299 Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370 V+ + R ++++ ++F L+ ++T F NM + G VP+++ L I+ +++H++E Sbjct: 300 FVIEIR-RDASANVILNNLFKLTSLQTNFSFNMLAIENG-VPKILSLRQIIDNYISHQKE 357 Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQ 427 V+ RR+ F + R IL+GLLIA ++DE+IAIIRN + + ++SRF+L+E Q Sbjct: 358 VITRRTQFDKNKAEARAHILEGLLIALDHLDEVIAIIRNSETDVIAQAELMSRFNLSERQ 417 Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487 AIL++RLR L LE +I+SE D LLA + +L ++ I E+ E+K ++ Sbjct: 418 SQAILDMRLRRLTGLERDKIQSEYDELLALIADLADILAKPERVVTIIKEEMDEIKRKYA 477 Query: 488 KSTDLGRRRTTFC--EVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHS 537 RRT EV + + +IE+E + + +SN+G+I+ L K Sbjct: 478 NP-----RRTELMIGEVL----SLEDEDLIEEEDVLITLSNKGYIKRLAQDEFRAQKRGG 528 Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPA 577 + + D ++ + T D +L + G+ Y L A Sbjct: 529 RGVQGTGVNDDDFVRELVSTSTHDTLLFFTNFGRVYRLKA 568 >gi|296110749|ref|YP_003621130.1| DNA gyrase, A subunit [Leuconostoc kimchii IMSNU 11154] gi|295832280|gb|ADG40161.1| DNA gyrase, A subunit [Leuconostoc kimchii IMSNU 11154] Length = 849 Score = 395 bits (1014), Expect = e-107, Method: Compositional matrix adjust. Identities = 230/606 (37%), Positives = 356/606 (58%), Gaps = 36/606 (5%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + +L ++ +L+YA+S I RA+PD+RDG KPVHRRI+++M E G KKSA Sbjct: 9 IHNANLSEQMKTSFLSYAMSVIVARALPDVRDGMKPVHRRILYSMIEQGNTPDKPHKKSA 68 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 RIVG+V+GK HPHGD ++Y+S+VR+AQPF R+ L+ G GNFG++DGDSAAA RYTEAR+ Sbjct: 69 RIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRHMLVDGHGNFGSVDGDSAAAMRYTEARL 128 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 ++VA +++ +++D V+F Y+ E+ EP V P++FPNLL NG +GIAVGMAT+IP+HN+ Sbjct: 129 SKVAMEMVRDLNKDTVNFIPNYDGEEREPEVLPARFPNLLVNGATGIAVGMATNIPTHNL 188 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ A L++NPE + L+E + GPDFPTGGI++ + I +Y GRG VRA+ Sbjct: 189 GEVISALHVLMNNPEATTLDLMEALPGPDFPTGGIVM-GKSGIRRAYETGRGRVTVRAKV 247 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316 +E+ G I+VTE+PY V K+RLIE+I+EL KRI + IRDES D V Sbjct: 248 DIEQTKTGKEQIIVTELPYAVNKARLIERISELARDKRIEGITGIRDESDRDGLRVSIDV 307 Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376 R +++ +++ + ++T F NM ++ G+ PQ M L IL +L+H+REV+ RR+ Sbjct: 308 RRDASASVILNNLYKETLLQTNFSFNMLAINGGK-PQTMSLKEILVAYLSHQREVIRRRT 366 Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLTENQVDAILN 433 +F +Q R IL+GL IA +ID II IIR+ ++ K ++ +SL++ Q AIL+ Sbjct: 367 AFDLQKAQARAHILEGLRIALDHIDAIIGIIRSSATSEEAKTRLIDGYSLSDKQAQAILD 426 Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493 +RL L LE +I+ E L+A + +L + +++ +QI + E+ EI +K D Sbjct: 427 MRLVRLTGLERDKIEDEYQKLVALIADLKDIL-AHEERVDQIIYD--ELLEIQTKFGDAR 483 Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD--------LSALHF 545 R +V+ + L + + V ++ G+I+ + + ++ Sbjct: 484 RTELQVGDVTNLEDEDLIEEED----VIVTLTRNGYIKRVPQAEFKAQNRGGRGVQGMNV 539 Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTL---------------PAGNLLSGRGHGEAI 590 + D + + T D +L + GK Y + P NLL G E I Sbjct: 540 NDEDFVDQMVATSTHDTLLFFTNKGKVYRMKGYEVPEYGRQAKGIPVVNLLKFEGD-EKI 598 Query: 591 QLLIDL 596 Q +I++ Sbjct: 599 QTVINV 604 >gi|189184286|ref|YP_001938071.1| DNA gyrase subunit A [Orientia tsutsugamushi str. Ikeda] gi|189181057|dbj|BAG40837.1| DNA gyrase subunit A [Orientia tsutsugamushi str. Ikeda] Length = 905 Score = 395 bits (1014), Expect = e-107, Method: Compositional matrix adjust. Identities = 256/745 (34%), Positives = 402/745 (53%), Gaps = 59/745 (7%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 E N+ +S++ ++ YL YA+S I RA+PD+RDG KPVHRR+++AM E G + ++ Sbjct: 8 ESNINIISIKEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMYESGYHYNKQYR 67 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSAR+VG+VIGK HPHG+ +VYDSLVR+AQ F R PL+ GQGNFG++DGD+AAA RYTE Sbjct: 68 KSARVVGDVIGKYHPHGELAVYDSLVRMAQDFSLRLPLVDGQGNFGSMDGDAAAAMRYTE 127 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 R+ +VA +L+ +++D VDF+ Y+ + EP V P+ FPNLL NGT GIAVGMAT+IP Sbjct: 128 VRLKKVAHSLLEDINKDTVDFQANYDGLEQEPKVLPAGFPNLLVNGTGGIAVGMATNIPP 187 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E+ +A A IDN +I+I +L+E + GPDFPTGG I+ + I +Y GRG VR Sbjct: 188 HNLCEVVDACCAYIDNNDITIIELMELVKGPDFPTGGQIIGTF-GIKSAYNTGRGKIIVR 246 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIV 312 + +E I++TEIP+ V K+ L+EKIAEL+ K+I + IRDES + +R+V Sbjct: 247 GKTDIES-DSLKHAIIITEIPFMVNKASLVEKIAELVNDKKIEGISTIRDESNKSGIRVV 305 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 + K + + DL++ ++ + ++T F + M L G +P+ M L I+ + R EV+ Sbjct: 306 IELKKHA-NTDLILNQLYSYTSLQTTFNVMMLALDQG-IPKTMTLKDIIVAFTNFREEVI 363 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRF-------- 421 +R+ F + + IL G++IA NIDE+I IIR N ++ K +++R Sbjct: 364 TKRTIFLLNKARDKAHILVGIIIAVSNIDEVIKIIRSSANSEEAKSRLMARMWNISDVYD 423 Query: 422 -----------------SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSL 464 LTE Q +IL LRL+ L E +++ EL+NL+ E + + Sbjct: 424 LVKLVDDRAILKEDGQCFLTEQQTKSILELRLQRLTNTERGKVEDELNNLVKEIKAYLEI 483 Query: 465 LNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVI 524 L S + + E+ ++KE FS + R T E ++ + +I +E + V + Sbjct: 484 LGSRDKLLETMKFELNQIKEQFSTT------RLTTIENQEFEQDI--EDLIPEEEVVVTV 535 Query: 525 SNRGWIR--SLKSHSVDLSALHFKEGDSLK---IALH---AHTTDRILLLSTDGKAYTLP 576 + G+I+ L ++ + G S++ + H +T IL S G+ Y L Sbjct: 536 TLAGYIKRVPLSTYRAQKRGGKGRVGSSVQNEDVITHLFIENTHTSILFFSNIGQVYNLK 595 Query: 577 AGNLLSG--RGHGEAIQLLIDLNHNQDIVTAFVY------DSTCKLLVVSSK-GNAFIVE 627 L G + G I LI + N+ I DS K ++ ++K GN + Sbjct: 596 VYKLPLGTPQSKGRPIINLISIKENETITNIMPMPAESENDSEKKYIIFATKHGNIRRND 655 Query: 628 ESEIIANTRKGKTFLKVSSEEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQIPEMSRGKG 686 S+ GK +++ + + V G+HV + +N K + F + + Sbjct: 656 LSDFKHIASNGKIAIRLDEGDSLISVKSCDEGNHVLLATQNGKAIRFPVKDLRVFKSRTS 715 Query: 687 VRLQSYKDGGISDVICFKICEGLTW 711 +++ K VI I +G+ Sbjct: 716 DGVKAIKLAANDAVISMTILKGINC 740 >gi|262277206|ref|ZP_06054999.1| DNA gyrase, A subunit [alpha proteobacterium HIMB114] gi|262224309|gb|EEY74768.1| DNA gyrase, A subunit [alpha proteobacterium HIMB114] Length = 848 Score = 395 bits (1014), Expect = e-107, Method: Compositional matrix adjust. Identities = 225/623 (36%), Positives = 360/623 (57%), Gaps = 56/623 (8%) Query: 26 LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85 ++ YL+YA+S I RA+PD RDG KPVHRRII+AM + G D+ F+KSAR+VG+VIGK Sbjct: 15 MKSSYLSYAMSVIVSRALPDARDGLKPVHRRIIYAMYKGGYDWSKQFRKSARVVGDVIGK 74 Query: 86 LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145 HPHGDQ+VYD+LVRLAQ F L+ GQGNFG++DGD AAA RYTE ++ +++E ++ Sbjct: 75 YHPHGDQAVYDALVRLAQDFSMNTKLLEGQGNFGSLDGDRAAAMRYTETKLAKISEFLIS 134 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 +D++ V+F++ Y++ ++EPVV P++FPNLL NG GIAVGMAT+IP HN+ E+ + LA Sbjct: 135 DIDKNTVNFQNNYDDTETEPVVLPAQFPNLLVNGAGGIAVGMATNIPPHNLGEVIDGTLA 194 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265 +DN +IS+ ++++ I GPDFPTGGII+ E I Y GRG ++R +EE R Sbjct: 195 YLDNNKISVSEIMKKIPGPDFPTGGIILGKNE-IKNGYEKGRGSIKIRGEIEIEEGSRDR 253 Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFPKNRSLDPDL 324 I++ +PYQV K+ LIEKIA LI K++ + D+RDES E VRIV+ + + ++ ++ Sbjct: 254 KLIIIKSVPYQVNKTVLIEKIAFLIRDKKLEGIADLRDESNKEGVRIVIELR-KGVNQEI 312 Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384 ++ ++ S +E+ F N ++ + P+++ L ++ +++ R + + +R+ F ++ Sbjct: 313 IINQLYKFSPLESSFGFNTLAINEKK-PELLNLKQFIEIFVSFREKTIIKRTLFDLKKAK 371 Query: 385 RRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS------------------------- 419 R IL GL IA NIDEII+IIR P VS Sbjct: 372 DRSHILIGLFIAIENIDEIISIIRKSKTPNDAKVSLLKKTWNFKKSKLNKNILNINELSD 431 Query: 420 --RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477 + L++ QV AIL+LRL+ L + +I +EL L K+ +LN + N I Sbjct: 432 LDHYQLSDFQVKAILDLRLQKLTAIGYDEINNELSELYELIIKLKKILNDKTELINLIKN 491 Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHS 537 E+ +K FS R+ +++ + + +I+KE + V ++N+G+I+ + Sbjct: 492 ELIGIKNKFSTP----RKTKIVDQITSVE----VEDVIQKEQVIVTVTNKGYIKRTPITN 543 Query: 538 VDLS--------ALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGR 584 + + +E D + +T +L S G K + +P G S + Sbjct: 544 IKAQKRGGRGKIGIVTREEDFVTQLFSVNTLTPVLFFSNKGIVYKLKTWKIPEG---SNQ 600 Query: 585 GHGEAIQLLIDLNHNQDIVTAFV 607 G+++ L+ ++ NQ V++ + Sbjct: 601 SKGKSLHNLLPID-NQSYVSSIM 622 >gi|74316966|ref|YP_314706.1| DNA gyrase subunit A [Thiobacillus denitrificans ATCC 25259] gi|74056461|gb|AAZ96901.1| DNA gyrase, subunit A [Thiobacillus denitrificans ATCC 25259] Length = 849 Score = 395 bits (1014), Expect = e-107, Method: Compositional matrix adjust. Identities = 232/611 (37%), Positives = 349/611 (57%), Gaps = 57/611 (9%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 VSL + YL YA+S I RA+PD+RDG KPVHRR+++AM+E+G D+ A+KKSAR+V Sbjct: 11 VSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNELGNDWNKAYKKSARVV 70 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGD +VYD++VR+AQ F RYPLI GQGNFG++DGD+AAA RYTE RM ++ Sbjct: 71 GDVIGKYHPHGDTAVYDTMVRMAQDFSLRYPLIDGQGNFGSVDGDNAAAMRYTEVRMARI 130 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A +L +D++ VDF Y+ + EP+V P+K PNLL NG+SGIAVGMAT+IP HN+ +I Sbjct: 131 AHELLADLDKETVDFGPNYDGSEQEPLVLPTKIPNLLINGSSGIAVGMATNIPPHNLTDI 190 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 C A AL+D P IE L+ + PDFPT GII + + YR GRG +RA VE Sbjct: 191 CNALFALLDAPATDIESLISIVQAPDFPTAGIIY-GLSGVRDGYRTGRGRVVMRATCHVE 249 Query: 260 EVGR--GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317 ++ + G I++ E+PYQV K+ L+ +I EL+ K+I + D+RDES + V Sbjct: 250 DLDKSGGKQAIIIDELPYQVNKANLLIRIGELVRDKQIDGIADLRDESDKSGMRVYIELK 309 Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377 R + D+++ +++ + M+ F +NM L G+ P+++ L +L +L HRREV+ RR+ Sbjct: 310 RGENADVVLNNLYKQTQMQDTFGMNMVALIDGQ-PRLLNLKEMLDAFLRHRREVVTRRTV 368 Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP------------KPVMVSR----- 420 F ++ R IL+GL +A N+DEI+ +I++ + P K MV Sbjct: 369 FDLRKARERGHILEGLAVALANVDEIVELIKSSETPAIAKERLLGRAWKSAMVEEMLARI 428 Query: 421 --------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEK 460 + L+E Q IL ++L+ L LE +I +E ++A+ Sbjct: 429 DPEYSRPVNMGPEFGLHADGYHLSEIQAQRILEMQLQRLTNLESDKILAEYKEIMAKIAD 488 Query: 461 IDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI 520 + +L + + I E+ +V++ F GRR T V A +++ +I+ E + Sbjct: 489 LLDILANPARITQIIREELTQVRDQFGD----GRRSTI---VENAQDMSMED-LIKPEEM 540 Query: 521 TVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKA 572 V +S+ G++ R+ K A K+ D ++ A+T D IL S G+ Sbjct: 541 VVTLSHGGYMKSQPLDDYRAQKRGGRGKQAAGTKDEDFIEKMFVANTHDYILCFSNRGRL 600 Query: 573 YTLPAGNLLSG 583 Y L N+ G Sbjct: 601 YWLKVYNVPQG 611 >gi|255004094|ref|ZP_05278895.1| DNA gyrase subunit A [Anaplasma marginale str. Virginia] Length = 902 Score = 395 bits (1014), Expect = e-107, Method: Compositional matrix adjust. Identities = 229/602 (38%), Positives = 341/602 (56%), Gaps = 59/602 (9%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 V VS+ LE YL+YA+S I RAIPD+RDG KPVHRRI+++M + G D +KK+A Sbjct: 5 VLPVSIEQELESSYLSYAMSVIVSRAIPDIRDGLKPVHRRILYSMYKSGYDHNKPYKKAA 64 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+V+G+ HPH D ++YD+LVR+AQ F PLI QGNFG+IDGD A+ RYTEAR+ Sbjct: 65 RVVGDVMGRYHPHADTAIYDALVRMAQDFSLLVPLIDSQGNFGSIDGDPPASMRYTEARL 124 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 ++ A +L +DED VDFR Y+E + EPV+ P++FPNLL NG G+AVGM+T+IPSHN+ Sbjct: 125 SEAAHFLLNDIDEDTVDFRPNYDENEEEPVILPAEFPNLLVNGAGGVAVGMSTNIPSHNL 184 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ +A +A I+ PEI++++L+ I GPDFPTGG+I+ I ++ GRG VR R Sbjct: 185 GEVVDACVAYIERPEITLDELMAIIPGPDFPTGGVIM-GDAGIRSAFASGRGTIVVRGRT 243 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316 EE+ G I++ EIPYQV K++L+E+I EL+ K+I + D+RDES + V Sbjct: 244 HTEELPSGRQAIIIDEIPYQVNKAKLVERIHELVKEKKIEGVADLRDESNKSGVRVAIEL 303 Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376 R +D +++ + L+ + T F +N VL + P+VM L I+ ++ R+EV+ RR+ Sbjct: 304 KRQVDSQVVLNQLLGLTPLRTSFSINTLVLENNK-PRVMSLPEIIATFVDFRKEVIVRRT 362 Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE-------------------------- 410 FR++ I + + G+ IA LNIDE+++II++ Sbjct: 363 RFRLKKIREKAHLYIGMYIAVLNIDEVVSIIKSSKDSAEASAALRERRWAPSADIRNMIE 422 Query: 411 ---DKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLA---EKEKI--- 461 D V + LT QV AIL +RL+ L LE+ ++++EL++++A E KI Sbjct: 423 LVSDSTGVVEGGMYQLTVPQVKAILEMRLQRLTGLEKDKLEAELESMVALITEYTKILST 482 Query: 462 DSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPIT 521 DSLL +Q + L R T E S D+ +++I KE + Sbjct: 483 DSLLMDIVKQG------------LLDAKAKLATPRNTAIEQS-VDEID-AESLIPKEEMV 528 Query: 522 VVISNRGWIRSLKSHSVDLS--------ALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573 V ++ G+++ +K + A KE D T +L S GK Y Sbjct: 529 VTVTMNGFVKRVKLSNYRAQKRGGKGRVAQGIKEEDVTTKLFVVDTHTSVLFFSNVGKVY 588 Query: 574 TL 575 L Sbjct: 589 KL 590 >gi|222474987|ref|YP_002563402.1| DNA gyrase subunit A (gyrA) [Anaplasma marginale str. Florida] gi|222419123|gb|ACM49146.1| DNA gyrase subunit A (gyrA) [Anaplasma marginale str. Florida] Length = 908 Score = 395 bits (1014), Expect = e-107, Method: Compositional matrix adjust. Identities = 229/602 (38%), Positives = 341/602 (56%), Gaps = 59/602 (9%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 V VS+ LE YL+YA+S I RAIPD+RDG KPVHRRI+++M + G D +KK+A Sbjct: 11 VLPVSIEQELESSYLSYAMSVIVSRAIPDIRDGLKPVHRRILYSMYKSGYDHNKPYKKAA 70 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+V+G+ HPH D ++YD+LVR+AQ F PLI QGNFG+IDGD A+ RYTEAR+ Sbjct: 71 RVVGDVMGRYHPHADTAIYDALVRMAQDFSLLVPLIDSQGNFGSIDGDPPASMRYTEARL 130 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 ++ A +L +DED VDFR Y+E + EPV+ P++FPNLL NG G+AVGM+T+IPSHN+ Sbjct: 131 SEAAHFLLNDIDEDTVDFRPNYDENEEEPVILPAEFPNLLVNGAGGVAVGMSTNIPSHNL 190 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ +A +A I+ PEI++++L+ I GPDFPTGG+I+ I ++ GRG VR R Sbjct: 191 GEVVDACVAYIERPEITLDELMAIIPGPDFPTGGVIM-GDAGIRSAFASGRGTIVVRGRT 249 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316 EE+ G I++ EIPYQV K++L+E+I EL+ K+I + D+RDES + V Sbjct: 250 HTEELPSGRQAIIIDEIPYQVNKAKLVERIHELVKEKKIEGVADLRDESNKSGVRVAIEL 309 Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376 R +D +++ + L+ + T F +N VL + P+VM L I+ ++ R+EV+ RR+ Sbjct: 310 KRQVDSQVVLNQLLGLTPLRTSFSINTLVLENNK-PRVMSLPEIIATFVDFRKEVIVRRT 368 Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE-------------------------- 410 FR++ I + + G+ IA LNIDE+++II++ Sbjct: 369 RFRLKKIREKAHLYIGMYIAVLNIDEVVSIIKSSKDSAEASAALRERRWAPSADIRNMIE 428 Query: 411 ---DKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLA---EKEKI--- 461 D V + LT QV AIL +RL+ L LE+ ++++EL++++A E KI Sbjct: 429 LVSDSTGVVEGGMYQLTVPQVKAILEMRLQRLTGLEKDKLEAELESMVALITEYTKILST 488 Query: 462 DSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPIT 521 DSLL +Q + L R T E S D+ +++I KE + Sbjct: 489 DSLLMDIVKQG------------LLDAKAKLATPRNTAIEQS-VDEID-AESLIPKEEMV 534 Query: 522 VVISNRGWIRSLKSHSVDLS--------ALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573 V ++ G+++ +K + A KE D T +L S GK Y Sbjct: 535 VTVTMNGFVKRVKLSNYRAQKRGGKGRVAQGIKEEDVTTKLFVVDTHTSVLFFSNVGKVY 594 Query: 574 TL 575 L Sbjct: 595 KL 596 >gi|229497118|ref|ZP_04390821.1| DNA gyrase, A subunit [Porphyromonas endodontalis ATCC 35406] gi|229315935|gb|EEN81865.1| DNA gyrase, A subunit [Porphyromonas endodontalis ATCC 35406] Length = 869 Score = 394 bits (1013), Expect = e-107, Method: Compositional matrix adjust. Identities = 231/611 (37%), Positives = 362/611 (59%), Gaps = 28/611 (4%) Query: 13 VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72 +E+ + + + ++ Y+ Y++S I RA+PD+RDGFKPVHRR+++AM+EMG + Sbjct: 4 IEDRIIKIDIETEMKTAYIDYSMSVIVSRALPDVRDGFKPVHRRVLYAMNEMGNVYSQPT 63 Query: 73 KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132 +KSA+ VGEV+ K HPHGD +VY +LVRLAQP+ RY L+ GQGNFG++DGDS AA RYT Sbjct: 64 RKSAKAVGEVLAKYHPHGDSAVYMTLVRLAQPWNLRYTLVDGQGNFGSVDGDSPAAMRYT 123 Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192 EAR+T++A +L+ +D++ VDF++ +++ EP V P++FPNLL NG SGIAVGMAT++ Sbjct: 124 EARLTELAGEMLRDIDKETVDFQNNFDDTTQEPTVLPTRFPNLLVNGASGIAVGMATNMA 183 Query: 193 SHNVQEICEAALALID-NPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251 HN++E + +A ID + + L+ YI PDFPTGG I + E++ GRG Sbjct: 184 PHNLRECIDGCVAYIDAGGALEVADLMRYIKAPDFPTGGFIY-GYAGVKEAFETGRGRIV 242 Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--V 309 +RAR +E G I+VTEIPYQV K++L+ IA+L+ +RI + +I DES+ + Sbjct: 243 LRARTEIETDSNGRENIIVTEIPYQVNKAQLVSDIAQLVNERRIEGISNISDESSGKGGM 302 Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369 RIV+ K R + +++ +F L+ +++ F +N L GR P ++ L ++ E++ HR Sbjct: 303 RIVIEVK-RDANASVVLNHLFKLTPLQSYFNVNNIALVKGR-PCLLNLKQLIGEFVDHRH 360 Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTEN 426 +V+ RRS F ++ R IL+GLLIA NIDE+I IIR N + + + RF L+E Sbjct: 361 DVVRRRSIFDLRKARERAHILEGLLIAVDNIDEVIHIIRSSENAQEAQERLRERFELSEL 420 Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486 Q AI+++RLR+L LE ++++E D L+ + ++ LL + E+ EVKE F Sbjct: 421 QARAIVDMRLRALTGLESDKLRAEFDELMKTIQYLEGLLADDNLLMQVVKDELLEVKEKF 480 Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSV 538 RRT E+ + + + + + + IS+ G+I RS V Sbjct: 481 GDP-----RRT---EIVFSSEEFNPEDFYADDEMIITISHLGYIKRTPLRDFRSQARGGV 532 Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDL 596 +E D ++ A +LL +T G+ + LP + G G AIQ ++++ Sbjct: 533 GSKGSTTREEDFIEYIYSASMHATLLLFTTKGRCFWLPVYKIPEGAKSTKGRAIQNILNI 592 Query: 597 NHNQDIVTAFV 607 + D +TA + Sbjct: 593 EAD-DRITACI 602 >gi|117920417|ref|YP_869609.1| DNA gyrase subunit A [Shewanella sp. ANA-3] gi|117612749|gb|ABK48203.1| DNA gyrase subunit A [Shewanella sp. ANA-3] Length = 918 Score = 394 bits (1013), Expect = e-107, Method: Compositional matrix adjust. Identities = 232/605 (38%), Positives = 347/605 (57%), Gaps = 55/605 (9%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 ++ +++ L+ YL YA+S I RA+PD+RDG KPVHRR++ AMSE+ D+ +KKS Sbjct: 7 SISPINIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELKNDWNKPYKKS 66 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 AR+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG++DGDSAAA RYTE R Sbjct: 67 ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYTLVDGQGNFGSVDGDSAAAMRYTEIR 126 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 M ++A +L ++++ VD+ Y+ + P V P++ PNLL NG+SGIAVGMAT+IP HN Sbjct: 127 MDKLAHQLLADLEKETVDYVPNYDGTEQIPAVLPTRVPNLLINGSSGIAVGMATNIPPHN 186 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 + E+ + LALI +P +SIE+L+E+I GPDFPT II R+ I+++Y+ GRG +RA Sbjct: 187 LTEVVKGCLALIADPALSIEQLMEHIPGPDFPTAAII-NGRKGIIDAYKTGRGRAVMRAL 245 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315 VE G I+VTEIPYQV K++LIEKIAEL+ K+I + +RDES +D ++ Sbjct: 246 AEVETEDNGRERIIVTEIPYQVNKAKLIEKIAELVKDKKIEGISGLRDESDKDGMRIVIE 305 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 R ++++ +++ + M+ F +NM L+ G+ P++ L +L+ ++ HRREV+ RR Sbjct: 306 IKRGEVGEVVLNNLYAQTQMQCSFGINMVALTNGQ-PKLFNLKEMLECFILHRREVVTRR 364 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV----------------- 418 + F ++ R IL+ L +A NID IIA+I+ P V Sbjct: 365 TVFELRKARERAHILEALAVALANIDPIIALIKASPTPADAKVKLVEQGWALGHVQGMLE 424 Query: 419 --------------------SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458 + LTE Q AIL LRL L LE +I +E + LL Sbjct: 425 KAGDDAARPEWLEPEFGIRDGLYYLTEQQAQAILELRLHRLTGLEHDKIIAEYEELLEFI 484 Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518 + +L S ++ I E+ E+ + G R T + D + + +I +E Sbjct: 485 AGLLFILRSPERLMEVIKEELEEI------LAEYGDARRTVINANEIDMSL--EDLINEE 536 Query: 519 PITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570 + V +S+ G+ + + + +A K+ D ++ L A+T D IL S G Sbjct: 537 DVVVTLSHLGYAKYQPLSDYQAQRRGGKGKAATKVKDEDFVEKLLVANTHDTILCFSDFG 596 Query: 571 KAYTL 575 K Y L Sbjct: 597 KMYWL 601 >gi|153938259|ref|YP_001389376.1| DNA gyrase subunit A [Clostridium botulinum F str. Langeland] gi|152934155|gb|ABS39653.1| DNA gyrase, A subunit [Clostridium botulinum F str. Langeland] Length = 831 Score = 394 bits (1013), Expect = e-107, Method: Compositional matrix adjust. Identities = 251/693 (36%), Positives = 404/693 (58%), Gaps = 36/693 (5%) Query: 12 LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71 L E + V + +++ Y+ YA+S I RA+PD+RDG KPVHRRII++M +GL Sbjct: 2 LNEGKILPVDVSKEMKKCYIDYAMSVIAGRALPDVRDGLKPVHRRIIYSMQGLGLAPEKG 61 Query: 72 FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131 ++K ARIVG+V+GK HPHGD +VY++LVR+AQ F RY L+ G GNFG++DGD AAA RY Sbjct: 62 YRKCARIVGDVLGKYHPHGDTAVYEALVRMAQDFSIRYTLVDGHGNFGSVDGDGAAAMRY 121 Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191 TEA+M++++ +++ ++++ VDF ++ E+ EP V PS+FPNLL NG++GIAVGMAT+I Sbjct: 122 TEAKMSKISMELIKDINKNTVDFIPNFDGEEEEPSVLPSRFPNLLVNGSAGIAVGMATNI 181 Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251 P HN+ E+ + + LIDN +++I L+ I GPDFPT G+IV +R I E+Y GRG Sbjct: 182 PPHNLTEVIDGIIMLIDNEDVNILDLMTKIKGPDFPTFGLIVGTR-GIREAYETGRGKVI 240 Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VR 310 +RA+ +EE +G IVVTEIPYQV KS+LIE +A L+ K+I + D+RDES D +R Sbjct: 241 IRAKAEIEE-EKGRNRIVVTEIPYQVNKSKLIENMANLVKDKKINGISDLRDESDRDGMR 299 Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370 IV+ K R +P++++ ++ + ++ F + M L + PQV+ L IL ++ ++E Sbjct: 300 IVIELK-RDANPNIVLNQLYKHTKLQDTFGIIMLAL-VNNQPQVLNLKEILVNYVEFQKE 357 Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQ 427 V+ RR+ F + R IL+GL IA +IDE+I +IR N + K +++ F+L+E Q Sbjct: 358 VIRRRTKFDLDKALARAHILEGLRIALDHIDEVIKLIRSSKNAAEAKEGLMNNFNLSEKQ 417 Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487 AIL+++L+ L LE +I+ E L+ + +L+ + + I E+ E+K + Sbjct: 418 AQAILDMKLQRLTGLEREKIEEEYKELMEKISYFREILDKEELVLSIIKEELIEIKNKY- 476 Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSVD 539 G R T E+ + + + +IE + + V +++ G+I+ L K Sbjct: 477 -----GDERKT--EIVKGEHDIDIEDLIEDKKVIVTLTHGGYIKRLDMDTYSSQKRGGKG 529 Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEAIQLLIDLN 597 + A K+ D ++ T IL + GK Y L A + +GR G I +I + Sbjct: 530 IQATSTKQDDFIENMFVTSTHSTILFFTNRGKVYKLKAYEIPEAGRTAKGTNIVNIIPIE 589 Query: 598 HNQDIVTAFVY---DSTCKLLVVSSKGNAFIVEESEI--IANTRKGKTFLKVSSEEKMKL 652 +N+ I T D ++ + G I++++EI ++ RKG E+ + Sbjct: 590 NNEKIQTVIGLKDIDDMKHFVMCTRNG---IIKKTEISKYSSIRKGGLNAINLREDDELI 646 Query: 653 VVKVT--GDHVAVVGENRKLLIFSIDQIPEMSR 683 VK+T + + +V +N + F+ + + M R Sbjct: 647 DVKMTKGNNEIIIVTQNGYCIRFNEEDVRPMGR 679 >gi|167759583|ref|ZP_02431710.1| hypothetical protein CLOSCI_01940 [Clostridium scindens ATCC 35704] gi|167662810|gb|EDS06940.1| hypothetical protein CLOSCI_01940 [Clostridium scindens ATCC 35704] Length = 828 Score = 394 bits (1013), Expect = e-107, Method: Compositional matrix adjust. Identities = 218/578 (37%), Positives = 345/578 (59%), Gaps = 28/578 (4%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 + V V L+ +E Y+ YA+S I RA+PD+RDG KPV RRI+++M E+ +K Sbjct: 7 DKVHEVDLKKTMETSYIDYAMSVIASRALPDVRDGLKPVQRRILYSMIELNNGPDKPHRK 66 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 ARIVG+ +GK HPHGD S+Y +LV +AQ + RYPL+ G GNFG++DGD AAA RYTEA Sbjct: 67 CARIVGDTMGKYHPHGDSSIYGALVNMAQEWSTRYPLVDGHGNFGSVDGDGAAAMRYTEA 126 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 R+++++ + +++D VDF ++E + EPVV P++FPNLL NGTSGIAVGMAT+IP H Sbjct: 127 RLSKISMELTADINKDTVDFAPNFDETEKEPVVLPARFPNLLVNGTSGIAVGMATNIPPH 186 Query: 195 NVQEICEAALALIDN-----PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249 N+ EI A + +ID+ E +IE++L+ I GPDFPTGG+I+ +R I E+YR GRG Sbjct: 187 NLNEIINAVVKIIDDQIEDKEETTIEEILKIIKGPDFPTGGMILGTR-GIEEAYRTGRGK 245 Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309 RVRA +E + G I+VTE+PY V K+RLIEKIAE++ K+I + D+ D+S+ + Sbjct: 246 IRVRAVTDIETMPNGKSRIIVTELPYMVNKARLIEKIAEMVRDKKIDGITDLSDQSSREG 305 Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369 V+ + ++ ++L+ ++ + ++ F + M L + P+VM + +L +L H+ Sbjct: 306 MRVVIELRKDVNANVLLNQLYKHTQLQDTFGVIMLAL-VNNEPRVMNILDMLNYYLQHQE 364 Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTEN 426 EV+ RR+ + + + R IL+GLLIA NIDE+I IIR K ++ RF L+E Sbjct: 365 EVVTRRTKYELNKAEERAHILQGLLIALDNIDEVIRIIRGSQTVQIAKAELMERFGLSEV 424 Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486 Q AI+++RLR+L LE ++++E L+ + ++ ++L K I EI +++ + Sbjct: 425 QSQAIVDMRLRALTGLEREKLENEYQELMKQIRELKAILADRKLLLGVIKEEILIIRDKY 484 Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV-------- 538 G R T D + + +I KE + + ++ G+I+ + SH Sbjct: 485 ------GDERRTSIGFDEFDIS--MEDLIPKEDVVITMTKLGYIKRM-SHDTFKSQNRGG 535 Query: 539 -DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575 + + + D ++ HT I+ + G+ Y + Sbjct: 536 KGIKGMQTLKEDYVEELFMTHTHHYIMFFTNTGRVYRM 573 >gi|150021071|ref|YP_001306425.1| DNA gyrase, A subunit [Thermosipho melanesiensis BI429] gi|149793592|gb|ABR31040.1| DNA gyrase, A subunit [Thermosipho melanesiensis BI429] Length = 806 Score = 394 bits (1013), Expect = e-107, Method: Compositional matrix adjust. Identities = 225/611 (36%), Positives = 368/611 (60%), Gaps = 27/611 (4%) Query: 26 LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85 L++ YL+Y++S I RAIPD+RDG KPV RRI+++M E+G+ FKKSARIVGEV+GK Sbjct: 11 LKQSYLSYSMSVIIGRAIPDVRDGLKPVQRRILYSMYELGVTHNKPFKKSARIVGEVMGK 70 Query: 86 LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145 HPHGD ++YD+LVRLAQ + RY L+ GQGNFG++D D AA RYTEAR+++++E +L+ Sbjct: 71 YHPHGDAAIYDTLVRLAQDWSIRYTLVEGQGNFGSVDKDPPAAMRYTEARLSKISEELLE 130 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 +D++ ++ D ++ EP+V PSKFPNLLANG++GIAVGM T+IP HN+ E+ + LA Sbjct: 131 DIDKETINMMDNFDGSLKEPIVLPSKFPNLLANGSTGIAVGMTTNIPPHNISELVDGFLA 190 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265 LI NP+ISIE+L+E+I GPDFPTGG I+ R I E Y G+G F +R + VEE + Sbjct: 191 LIKNPQISIEELIEFIPGPDFPTGGEII-GRAGIREMYTTGKGSFTIRGKLHVEE-DKKK 248 Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL-LEDIRDES-AEDVRIVL-FPKNRSLDP 322 IV+TEIPY V K+ LI+KI E A+ L ++DIRDES E +RIV+ P N ++ Sbjct: 249 KKIVITEIPYNVSKADLIKKIVEY--AENSSLQIKDIRDESDKEGLRIVIEIPNN--VNE 304 Query: 323 DLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQA 382 D+++ +++ + +++ F + V+ + P +M L ++ ++ HR EV+ +R+ F + Sbjct: 305 DIIINNLYKHTQLQSSFHAQLLVIDKDKRPVLMNLKELMWAFVEHRFEVVRKRAQFFYKQ 364 Query: 383 IDRRVEILKGLLIAYLNIDEIIAIIRN-EDKPKPV--MVSRFSLTENQVDAILNLRLRSL 439 ++ IL+GL+ A +ID II++IRN ED+ + ++ F TE Q AI++LRL L Sbjct: 365 YSKKAHILEGLIKASRSIDTIISVIRNSEDQNSAIKELMEMFDFTETQAKAIVDLRLGRL 424 Query: 440 RKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTF 499 KLE ++ + + L+ + + L+ ++ + +I E+ +K + S R++ Sbjct: 425 TKLEISKLIEDYNELVKKMKIEKELIGKDEKVYEKIIEELTYIKAQYGDS-----RKSEI 479 Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSL 551 + + + +I + + + ++ +G++ R+ K ++ D++ Sbjct: 480 LDHEEREIKFNELELIPDKEVVISLTKKGYLKMMSLSTFRTQKRGGKGVTGSSLMNDDAI 539 Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAFVYD 609 ++ H + L ++ GK Y L + S G+ I I+++ ++ I+T D Sbjct: 540 MEIIYTHLHGKTLFFTSKGKVYLLNNYQIEENSRTSKGKHISKYINIDKDEKILTMLSVD 599 Query: 610 STCKLLVVSSK 620 + L +K Sbjct: 600 NFVGELFFVTK 610 >gi|317402978|gb|EFV83517.1| DNA gyrase subunit A [Achromobacter xylosoxidans C54] Length = 889 Score = 394 bits (1013), Expect = e-107, Method: Compositional matrix adjust. Identities = 233/610 (38%), Positives = 344/610 (56%), Gaps = 61/610 (10%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 VSL + YL YA+S I RA+PD+RDG KPVHRR+++AM E+ D+ A+KKSARIV Sbjct: 11 VSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNRAYKKSARIV 70 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGDQSVYD++VR+AQ F RY L+ GQGNFG+IDGD+AAA RYTE R+ ++ Sbjct: 71 GDVIGKYHPHGDQSVYDTIVRMAQDFSMRYMLVDGQGNFGSIDGDNAAAMRYTEIRLAKI 130 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A +L +D++ VDF Y+ + EP++ PS+ PNLL NG+SGIAVGMAT+IP HN+QE+ Sbjct: 131 AHELLADIDQETVDFGPNYDGSEQEPLLLPSRLPNLLVNGSSGIAVGMATNIPPHNLQEV 190 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 + L + NP S+++L+E I PDFPTGG+I + E YR GRG +RA+ E Sbjct: 191 VDGCLYCLRNPACSVDELMEIIPAPDFPTGGVIY-GMSGVREGYRTGRGRVIMRAKTHFE 249 Query: 260 EVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318 ++ +G+ IVV IPYQV K L E+IAEL+ K+I + DIRDES +D ++ R Sbjct: 250 DMEKGNRQAIVVDAIPYQVNKKTLQERIAELVNDKKIEGISDIRDESDKDGMRLVIELKR 309 Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378 P++++ +++ + ++ F +N+ L G+ P+++ L ++ +L HRREV+ RR+ F Sbjct: 310 GEVPEVVLNNLYKNTQLQDTFGMNLVALVDGQ-PRLLNLKQMIDYFLQHRREVVTRRTVF 368 Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV-----------------MVSR- 420 +++ R +L+GL +A NID+ IAII+ P PV M+SR Sbjct: 369 QLRKARERGHVLEGLAVALANIDDFIAIIKAAPTP-PVARQELMAKSWDSSLVREMLSRA 427 Query: 421 ---------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453 + L++ Q ILN+RL+ L LE+ +I E + Sbjct: 428 DGDTPGGRAAFRPDDLGAEFGLQGDGLYRLSDTQAQEILNMRLQRLTGLEQDKIVGEYKD 487 Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513 +++ + +L ++ I E++ +K FS RR + D L Sbjct: 488 IMSTIADLLDILARPERITTIIGEELQAIKAEFSTGAKDTRRSEIELNATELDTEDL--- 544 Query: 514 MIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565 I + V +S+ G+I RS K A KE D + A+T D +L Sbjct: 545 -ITPTDMVVTLSHGGYIKSQPLSEYRSQKRGGRGKQATAMKENDWIDQLFIANTHDFLLC 603 Query: 566 LSTDGKAYTL 575 S G+ Y L Sbjct: 604 FSNRGRVYWL 613 >gi|300863985|ref|ZP_07108894.1| DNA topoisomerase IV subunit A [Oscillatoria sp. PCC 6506] gi|300338016|emb|CBN54040.1| DNA topoisomerase IV subunit A [Oscillatoria sp. PCC 6506] Length = 868 Score = 394 bits (1013), Expect = e-107, Method: Compositional matrix adjust. Identities = 253/747 (33%), Positives = 390/747 (52%), Gaps = 83/747 (11%) Query: 12 LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71 L V + +L +++ YL YA+S I RA+PD+RDG KPVHRRI++AM E+GL Sbjct: 7 LFSGQVISTALHTEMQQSYLEYAMSVIVGRALPDVRDGLKPVHRRILYAMHELGLTPDRP 66 Query: 72 FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131 ++K AR+VG+V+GK HPHGDQSVYD+LVR+ Q F RYPL++G GNFG++D D AA RY Sbjct: 67 YRKCARVVGDVLGKYHPHGDQSVYDALVRMVQEFSSRYPLLAGHGNFGSVDNDPPAAMRY 126 Query: 132 TEARMTQVA-ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190 TE R+ + E +L V E VDF D ++ EP V P++ P LL NG SGIAVGMAT+ Sbjct: 127 TETRLASICHEAMLTQVGEATVDFSDNFDSSQQEPTVLPAELPFLLLNGCSGIAVGMATN 186 Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250 IP HN+ E+ + +ALID P++S EKLL I GPDFPTGG I+ S E I ++Y G+G Sbjct: 187 IPPHNLNEVVDGLIALIDTPDLSDEKLLALIPGPDFPTGGEII-STEGITDAYTKGKGSI 245 Query: 251 RVRARWCVEEV-----GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305 VR +EE+ R IVVTE P+QV K+ IEK+AEL+ RI + D+RDES Sbjct: 246 AVRGVTRMEEIPAARRTRSKMAIVVTEFPFQVNKAGWIEKVAELVNQGRIEGISDLRDES 305 Query: 306 -AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364 E +R+V+ K R P ++ ++ +D++ F + L G+ P+ + L +L+E+ Sbjct: 306 DREGIRVVIEIK-REFSPQTVLSRLYHQTDLQCNFGAILLALVNGQ-PRQLTLRQMLQEF 363 Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRF 421 L R L RR + +Q RR I++GLL+ N+D I I+RN K + SR Sbjct: 364 LNFREVTLTRRYNHELQVAVRRCHIVEGLLLVLGNLDAAIDILRNAPDGSTAKQGLQSRL 423 Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481 + +E+Q DAIL + +R L LE +++E D L+A +++ LL ++ + E+R Sbjct: 424 NFSESQADAILAMPMRRLTGLERQNLQAEFDELMATIQELQRLLGDRRELLKALKKELRS 483 Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQA---------------------------- 513 +K + RRT V + +Q Sbjct: 484 LKRKYGDP-----RRTRLVTVEQGSGGAPEQGSRGAREQGSGGAEGRGSRGAGEQRGGEG 538 Query: 514 --MIEKEPITVV-----------ISNRGWIRSLKSHSVDLSALHFK-------EGDSLKI 553 + P+T V +++ ++R L S H K E D Sbjct: 539 KKKATQLPVTSVSTEPSEATVLEFTHKQYVRRLASAESSRGKNHDKSAQSRGGESDFSVN 598 Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611 + A T + + +L+ GKAY L ++ + R G I L+ + +D+ + + Sbjct: 599 TIQARTNENLAILTRTGKAYPLKISDIPTVGNRDRGTPIISLLSPSATKDVAPGNLPEIV 658 Query: 612 CKLLVVSSKGNA----FIVEE--------SEIIANTRKGKTFLKVSSEEKMKL-VVKVTG 658 + V+S +A + ++ SE+ T +G T +K+ +++++ ++ G Sbjct: 659 AGMFVLSENADATDLVTLTQQGKIKRLPLSELSDITNRGVTAVKLKDDDELRYAMLSKPG 718 Query: 659 DHVAVVGENRKLLIFSID--QIPEMSR 683 + V + +LL F ++ Q+P M R Sbjct: 719 EQVVLATSGGRLLRFELNDEQLPPMGR 745 >gi|325066317|ref|ZP_08124990.1| DNA gyrase subunit A [Actinomyces oris K20] Length = 893 Score = 394 bits (1013), Expect = e-107, Method: Compositional matrix adjust. Identities = 238/667 (35%), Positives = 377/667 (56%), Gaps = 42/667 (6%) Query: 9 SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68 +N V E ++ V L+ ++ YL YA+S I RA+PD+RDG KPVHRR+++AM + G Sbjct: 15 TNAPVPERIQPVDLQMEMQRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMYDGGYRP 74 Query: 69 GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128 A+F KS+RIVG+V+G HPHGD ++YD+L RL Q + RYPL++GQGNFG AA Sbjct: 75 TASFSKSSRIVGDVMGTYHPHGDSAIYDALARLVQWWSLRYPLVAGQGNFGTPGNLGPAA 134 Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188 RYTE +M +A +L+ +DED+VDF+D Y+ + EPV+ PS+FPNLL NG+ GIAVGMA Sbjct: 135 PRYTECKMAPLAMEMLRDIDEDSVDFQDNYDGRNQEPVILPSRFPNLLVNGSEGIAVGMA 194 Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYII----GPDFPTGGIIVESRESIVESYR 244 T IP HN++E+ A +++P+ S E+LL+ +I GPDFPTG I+ R I ++YR Sbjct: 195 TRIPPHNLREVARGAQWYLEHPDASREELLDALIERIPGPDFPTGATIL-GRRGIEDAYR 253 Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304 GRG RA VEE+ +G C+VVTE+PYQV L +KIA+L+ ++ + DIRDE Sbjct: 254 TGRGSITQRAVVNVEEI-QGRQCLVVTELPYQVNPDNLADKIAQLVRDGQVTGIADIRDE 312 Query: 305 SAEDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362 ++ R+V+ K ++ +++ +++ + ++ FP NM L G VP+ + LDG ++ Sbjct: 313 TSGRTGQRLVIVLKRDAV-AKVVLNNLYKRTQLQDNFPANMLALVDG-VPRTLSLDGFVR 370 Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVS 419 W+AH+ +V+ RRS FR++ + R+ IL+GLL A +D +IA+IR ++ + ++ Sbjct: 371 HWVAHQIDVIVRRSRFRLRKAEERLHILEGLLKAIDALDAVIALIRRSPTTEEARTGLMG 430 Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479 + E Q +AIL+L+LR L LE +I+ E + L A + + ++ S ++Q ++ E+ Sbjct: 431 LLDVDEAQAEAILSLQLRRLAALERLKIQEESEELRARVKDLREIIASPERQRGIVSDEL 490 Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV- 538 E+ E + RRT D + +I +E + V I+ G+ + ++ S Sbjct: 491 AEIVEKYGDE-----RRTRIVPF---DGEMSMEDLIPEEDVVVTITRSGYAKRTRTDSYR 542 Query: 539 -------DLSALHFKEGDSLKIALHAHTTDRILLLSTD------GKAYTLPAGNLLSGRG 585 + +E D + TT R LL T+ K Y LP G S Sbjct: 543 SQHRGGKGIRGATLREDDVVD-HFFVTTTHRWLLFFTNYGRVYRAKGYELPEGGRDS--- 598 Query: 586 HGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFL 642 G+ + L+ ++I YD L++ + +G SE +N G + Sbjct: 599 KGQHVANLLAFQPGEEIAQVMELQDYDQADYLVLATRRGLVKKTRLSEYNSNRSGGVIAI 658 Query: 643 KVSSEEK 649 + +E+ Sbjct: 659 NLRQDEE 665 >gi|257062760|ref|YP_003142432.1| DNA gyrase subunit A [Slackia heliotrinireducens DSM 20476] gi|256790413|gb|ACV21083.1| DNA gyrase subunit A [Slackia heliotrinireducens DSM 20476] Length = 838 Score = 394 bits (1013), Expect = e-107, Method: Compositional matrix adjust. Identities = 250/702 (35%), Positives = 392/702 (55%), Gaps = 37/702 (5%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 V+ L + +L Y++S I RA+PD+RDG KPVHRRI++AM + G+ KSA Sbjct: 17 VQTAELGREMRTSFLEYSMSVIVSRALPDVRDGLKPVHRRILYAMYDSGITPNKPHSKSA 76 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R VG+VIGK HPHGD +VYD++VRLAQ F R PL+ G GNFG+IDGDSAAA RYTEAR+ Sbjct: 77 RTVGDVIGKYHPHGDSAVYDAMVRLAQDFNMRVPLVDGHGNFGSIDGDSAAAMRYTEARL 136 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 + A +L + ++ VD+ Y+E EP V P++FPNLL NG++GIAVGMAT+IP HN+ Sbjct: 137 AKPAMELLADLGKETVDWVPNYDESLQEPSVLPARFPNLLVNGSNGIAVGMATNIPPHNL 196 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E +A ++DNP+++ E+L+E + GPDFPTGG+I RE I+ +Y GRG +++ + Sbjct: 197 GEAIDATCLMLDNPDVTTEELMEVMPGPDFPTGGVI-RGREGIISAYETGRGSLTIQSSY 255 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLF 314 ++E G I++TEIPYQV +S L++KI EL+ K++P + ++ D + + V I++ Sbjct: 256 KIKEGKNGKTSIIITEIPYQVNRSNLMQKIGELVRDKKLPEISNVHDGADRNSPVDIIIE 315 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K ++ P +++ +F + ++ + + M L G VP+ + L IL ++ H+ +V+ R Sbjct: 316 LKQNAI-PQVVLNKLFKHTQLQVGWGVIMIALVDG-VPRTLSLREILHYYILHQEDVIRR 373 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVDAI 431 R+ F ++ + R I++GLLIA +IDE+IAIIR K + RF L+E Q AI Sbjct: 374 RTQFDLEKAEARAHIVEGLLIALDHIDEVIAIIRGSRTDKEASDKLSERFGLSEAQCTAI 433 Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKI---DSLLNSGKQQWNQIACEIREVKEIFSK 488 L ++LR L LE +++ EL L KEKI +L I E++E+K F+ Sbjct: 434 LQMQLRRLTGLEREKLQEELAEL---KEKIAYYKRILADEHLMRQVIKEELQEIKGRFNT 490 Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSVDL 540 RRT ++ K + +I E + V ++N G+I+ L K + Sbjct: 491 P-----RRT---RIAGPAKDIDVEDLIADEEMVVTMTNAGYIKRLPVTTYRQQKRGGKGM 542 Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNH 598 ++ KE D ++ A T + +L S+ GK Y + H G A+ L+ L+ Sbjct: 543 QGVNLKENDFVEHLFIASTHNYMLFFSSAGKVYRKKVFEIPEAGRHARGTAVVNLLKLDK 602 Query: 599 NQDIVTAFVYDS--TCKLLVVSSKGNAFIVEESEIIANTRK-GKTFLKVSSEEKMKLVVK 655 + IV A + L+ +K + TR+ G + + +++ V + Sbjct: 603 GESIVAAIATKEFPEDEFLMFGTKEGMVKKTAMSLYDRTRQDGLIAINLREGDELIAVKR 662 Query: 656 VT-GDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDG 695 V G+ VA+V K + + ++ M R GVR + DG Sbjct: 663 VKPGEKVAMVSSAGKAISWDESEVRAMGRDTMGVRGMTVPDG 704 >gi|57238973|ref|YP_180109.1| DNA gyrase subunit A [Ehrlichia ruminantium str. Welgevonden] gi|58578910|ref|YP_197122.1| DNA gyrase subunit A [Ehrlichia ruminantium str. Welgevonden] gi|57161052|emb|CAH57959.1| DNA gyrase subunit A [Ehrlichia ruminantium str. Welgevonden] gi|58417536|emb|CAI26740.1| DNA gyrase subunit A [Ehrlichia ruminantium str. Welgevonden] Length = 898 Score = 394 bits (1013), Expect = e-107, Method: Compositional matrix adjust. Identities = 229/634 (36%), Positives = 361/634 (56%), Gaps = 57/634 (8%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 NV VS+ LE+ YL+YA+S I RAIPD+RDG KPVHRRI+++M + G D+ +KK+ Sbjct: 6 NVIPVSIEQELEDSYLSYAMSVIVSRAIPDIRDGLKPVHRRILYSMYKSGYDYSKPYKKA 65 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 AR+VG+V+GK HPH D ++YDSLVR+AQ F PLI QGNFG+IDGD A+ RYTEAR Sbjct: 66 ARVVGDVMGKYHPHADAAIYDSLVRMAQDFSLLLPLIDSQGNFGSIDGDPPASMRYTEAR 125 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 + + A +L +DED VDFR Y+ +SEPVV P++FPN+L NG G+AVGM+T+IPSHN Sbjct: 126 LARAAHFLLNDIDEDTVDFRPNYDGNESEPVVLPAEFPNILVNGAGGVAVGMSTNIPSHN 185 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 + E+ +A +A IDNP+I+ ++L++ + GPDFPTGG I+ I ++ G+G V+ + Sbjct: 186 LGEVVDACIAYIDNPDITFDELIQIVHGPDFPTGGTIL-GDAGIRSAFMTGKGTIIVQGK 244 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE-DVRIVLF 314 VE++ G I++ EIPYQV K++LIE+I EL+ KRI + D+RDES + +R+ + Sbjct: 245 THVEDLPSGKQAIIIDEIPYQVNKAKLIERIHELVKEKRIEGILDLRDESNKMGIRVAIE 304 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K + + +++ I L+ + T F +N VL + P+VM L I+ ++ +R+EVL R Sbjct: 305 LK-KQVSHQVVLNQILGLTPLRTSFSINTLVLDNNK-PKVMSLLDIISTFIEYRKEVLTR 362 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE------------------------ 410 R+ FR++ + + + G+ IA LNID++I+IIR+ Sbjct: 363 RTQFRLRKVREKAHLYIGMYIAVLNIDQVISIIRSSRDTAEATKRLLECKWSALASVKEM 422 Query: 411 -----DKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLL 465 D V+ LT QV +IL ++L+ L LE+ +++ +L ++++ ++ LL Sbjct: 423 IELVADSKSIVVNDVCQLTGVQVKSILEMKLQRLTSLEKEKLELDLKSMVSMIKQYTELL 482 Query: 466 NSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVIS 525 + + + + E+K L R T + S + T + +I KE + V ++ Sbjct: 483 GNKESLLKLVKNGLEEIK------AKLAVPRKTTIDYSHFE--TDVEDLIPKEDMVVTVT 534 Query: 526 NRGWIRSLKSHSVDLS--------ALHFKEGDSLKIALHAHTTDRILLLSTDG-----KA 572 G+I+ +K + +E D + +T +L S G K Sbjct: 535 MSGYIKRVKLSNYRAQRRGGKGRIGQAIREEDVITNLFVVNTHTSVLFFSNIGRVYKLKV 594 Query: 573 YTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606 Y LP G+ S G ++ + L+ N+ I + Sbjct: 595 YKLPLGDPTS---RGRSLVNIFPLSENEVITSVM 625 >gi|262376577|ref|ZP_06069805.1| DNA gyrase, A subunit [Acinetobacter lwoffii SH145] gi|262308287|gb|EEY89422.1| DNA gyrase, A subunit [Acinetobacter lwoffii SH145] Length = 993 Score = 394 bits (1013), Expect = e-107, Method: Compositional matrix adjust. Identities = 232/643 (36%), Positives = 370/643 (57%), Gaps = 67/643 (10%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 ++ +++ L+ YL YA+S I RA+PD+RDG KPVHRR++ AM E+G D+ A+KKSA Sbjct: 6 IRPIAIEDELKSSYLDYAMSVIVSRALPDVRDGLKPVHRRVLFAMHELGNDYNKAYKKSA 65 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD +VY+++VR+AQ F RY L+ GQGNFG++DGDSAAA RYTE RM Sbjct: 66 RVVGDVIGKYHPHGDSAVYETIVRMAQDFSLRYQLVDGQGNFGSVDGDSAAAMRYTEVRM 125 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 ++ +L +++D V++ D Y+ + P V P++ PNLL NG +GIAVGMAT++ HN+ Sbjct: 126 RKLTHELLADLEKDTVEWEDNYDGSERIPQVMPTRVPNLLINGVTGIAVGMATNMAPHNM 185 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ A LA ++P+ISIE L+E+I GPDFPTGGII + IV++YR G+G +R ++ Sbjct: 186 TEVVNACLAYANDPQISIEGLMEHISGPDFPTGGIIY-GKSGIVDAYRTGKGRLHIRGKY 244 Query: 257 CVEEVGR-GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315 EE + G IV TEIPYQV K++ IE+IAEL+ K++ + ++RDES +D + Sbjct: 245 HFEEDPKNGRTTIVFTEIPYQVNKAKTIERIAELVKEKKLEGISELRDESDKDGMRIAID 304 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 R + ++++ ++F + +E F +NM L G+ P++M L I+ ++ HR+EV+ RR Sbjct: 305 LKRGENAEVIVNNLFQNTQLENSFSINMVCLDNGQ-PKLMNLKDIIAAFIRHRQEVVTRR 363 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN-------------------------- 409 + F ++ R IL+GL +A NID II I++ Sbjct: 364 TMFELRKARERGHILEGLTVALANIDAIIETIKSSANPAEARERLQAGEWAGGGVLALLE 423 Query: 410 --------------EDKPKPVMVSR--FSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453 ED +P + + L+ QV+AI+ LRL L LE+ ++ +E Sbjct: 424 KAGSVSVRPDEIEGEDPSRPFGLDGEIYRLSPTQVNAIMELRLHRLTGLEQDKLHAEYSE 483 Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513 +L++ ++ ++LN N I E+ + + + + R+T+ E SR D + ++ Sbjct: 484 ILSQIAELTAILNDFNLLMNVIREELALILQQYGDA-----RKTSIVE-SRIDFS--RED 535 Query: 514 MIEKEPITVVISNRGWIRS--LKSHSVDL------SALHFKEGDSLK--IALHAHTTDRI 563 +I +E + + +S G+ ++ L ++ SA KE D ++ I +H T + Sbjct: 536 LIPEEQMVLTVSKSGYAKTQPLSDYAAQRRGGRGKSATSMKEDDYIQHLIVTSSHAT--V 593 Query: 564 LLLSTDGKAYTLPAGNL-LSGRG-HGEAIQLLIDLNHNQDIVT 604 L + GK Y L + + RG G + L+ L+ N+ I Sbjct: 594 LCFTNVGKVYRLKVYEVPQASRGAKGRPMVNLLPLDENETITA 636 >gi|282896473|ref|ZP_06304493.1| DNA topoisomerase 4 subunit A [Raphidiopsis brookii D9] gi|281198579|gb|EFA73460.1| DNA topoisomerase 4 subunit A [Raphidiopsis brookii D9] Length = 838 Score = 394 bits (1013), Expect = e-107, Method: Compositional matrix adjust. Identities = 264/770 (34%), Positives = 407/770 (52%), Gaps = 53/770 (6%) Query: 10 NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69 N L V +L +++ YL YA+S I RA+PD+RDG KPVHRRI++AM E+GL Sbjct: 6 NLLNTGQVVPTALHTEMQQSYLEYAMSVIVGRALPDVRDGLKPVHRRILYAMHELGLTPD 65 Query: 70 AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129 ++K AR+VG+V+GK HPHGDQ+VYD+LVRL Q F RYPL+ G GNFG++D D AA Sbjct: 66 RPYRKCARVVGDVLGKYHPHGDQAVYDALVRLVQDFSSRYPLLGGHGNFGSVDNDPPAAM 125 Query: 130 RYTEARMTQVA-ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188 RYTE R+ + E +L+ + E+ V+F ++ EP V P++ P LL NG +GIAVGMA Sbjct: 126 RYTETRLAPIGHEAMLREIGEETVEFVGNFDNSQQEPTVLPAQLPFLLINGCAGIAVGMA 185 Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248 T+IP HN+ EI + +ALID+P+++ EKLLE I GPDFPTGG IV S I E+Y G+G Sbjct: 186 TNIPPHNLGEIVDGLIALIDHPDLTEEKLLELIPGPDFPTGGQIVGS-GGIKEAYNTGKG 244 Query: 249 GFRVRARWCVEEV-----GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303 G +R +E++ GR I+VTE+PYQV K+ IEK+A+L+ R+ + D+RD Sbjct: 245 GIILRGVVSLEDILSTRGGRRRTAIIVTELPYQVNKAGWIEKVADLVNQGRLHGISDLRD 304 Query: 304 ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363 ES V+ R +P+ ++ ++ + ++T F + L G+ P+ + L +L+E Sbjct: 305 ESDRQGMRVVIELKRDANPEEVIGQLYQQTALQTTFGAILLALVEGQ-PRQLSLRQMLQE 363 Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSR 420 +L R + L RR S+ + + R I+ GLL A +DE+I I+R K V+ + Sbjct: 364 FLRFREDTLNRRYSYELGKAENRASIVAGLLKALSAVDEVITILRQSPDGSTAKMVLCQQ 423 Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480 LTE Q DAIL + LR L LE+ ++ E L + + LL ++ + ++R Sbjct: 424 LELTETQADAILAMPLRRLTSLEQQNLQEEFHQLSDQITSLRRLLEDRRELLKSLKKDLR 483 Query: 481 EVKEIFSKSTDLGRRRTTFCE---VSRADKATLQQAMI-EK------------EPITVVI 524 +K + + RRT + DK Q + EK EP + Sbjct: 484 TLKRKYGDT-----RRTKLIPGQIAVKPDKVNNQPSSPGEKEKSKISPEEQPPEPAILEF 538 Query: 525 SNRGWIRSLKSHSVDLSALHFKEGDSLKIALH-AHTTDRILLLSTDGKAYTLPAGNL--- 580 + RG++R L S A + I +T +L+L+T GK Y + G++ Sbjct: 539 TQRGYVRRLAPGSKKAKAETITGDNDFLIQTEITNTHQDLLILNTSGKVYPVKVGDISPI 598 Query: 581 --LSGRGHGEAIQLLIDLNHN--QDIVTAFVY---DSTCKLLVVSSKGNAFIVEESEIIA 633 S RG I LL + + I+ F+ T +++V+ +G + E+ Sbjct: 599 SARSPRGM-PLITLLTNTAQGNVEGILGRFILPETKDTHDMVIVTKQGRIKRLSLEELTN 657 Query: 634 NTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGEN-RKLLIFSI--DQIPEMSRGKGVRLQ 690 +++G T LK+ ++++ +H ++G + + L F+I DQ+P M R + LQ Sbjct: 658 VSKRGITILKLKDDDQLCFAQLTNPNHNLILGSSGGRCLRFAINDDQLPVMGRA-AMGLQ 716 Query: 691 SY---KDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVG 737 S+ K I + + E L + G + S L G RG +G Sbjct: 717 SFRILKSQQIISCVTIEQEENLLLVTQEGYAKRISSGSLRA--GNRGDLG 764 >gi|148284134|ref|YP_001248224.1| DNA gyrase subunit A [Orientia tsutsugamushi str. Boryong] gi|146739573|emb|CAM79318.1| DNA gyrase subunit A protein [Orientia tsutsugamushi str. Boryong] Length = 905 Score = 394 bits (1013), Expect = e-107, Method: Compositional matrix adjust. Identities = 258/746 (34%), Positives = 403/746 (54%), Gaps = 61/746 (8%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 E N+ +S++ ++ YL YA+S I RA+PD+RDG KPVHRR+++AM E G + ++ Sbjct: 8 ESNINIISIKEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMYESGYHYNKQYR 67 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSAR+VG+VIGK HPHG+ +VYDSLVR+AQ F R PL+ GQGNFG++DGD+AAA RYTE Sbjct: 68 KSARVVGDVIGKYHPHGELAVYDSLVRMAQDFSLRLPLVDGQGNFGSMDGDAAAAMRYTE 127 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 R+ +VA +L+ +++D VDF+ Y+ + EP V P+ FPNLL NGT GIAVGMAT+IP Sbjct: 128 VRLKKVAHSLLEDINKDTVDFQANYDGLEQEPKVLPAGFPNLLVNGTGGIAVGMATNIPP 187 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E+ +A A IDN I+I +L+E + GPDFPTGG I+ + I +Y GRG VR Sbjct: 188 HNLCEVVDACCAYIDNNNITIIELMELVKGPDFPTGGQIIGTF-GIKSAYNTGRGKIIVR 246 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIV 312 + +E I++TEIP+ V K+ L+EKIAEL+ KRI + IRDES + +R+V Sbjct: 247 GKTDIES-DSLKHAIIITEIPFMVNKASLVEKIAELVNDKRIEGISAIRDESNKSGIRVV 305 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 + K + + DL++ ++ + ++T F + M L G +P+ M L I+ + R EV+ Sbjct: 306 IELKKHA-NTDLILNQLYSYTSLQTTFNVMMLALDQG-IPKTMTLKDIIVAFTNFREEVI 363 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRF-------- 421 +R+ F + + IL G++IA NIDE+I IIR N ++ K +++R Sbjct: 364 TKRTIFLLNKARDKAHILVGIIIAVSNIDEVIKIIRSSANSEEAKSRLMARMWNVSDVYD 423 Query: 422 -----------------SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSL 464 LTE Q +IL LRL+ L E +++ EL+NL+ E + + Sbjct: 424 LVKLVDDRAILKEDGQCFLTEQQTKSILELRLQRLTNTERGKVEDELNNLVKEIKAYLEI 483 Query: 465 LNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVI 524 L S + + E+ ++KE FS + R T E ++ + +I +E + V + Sbjct: 484 LGSRDKLLETMKFELNQIKEQFSTA------RLTTIENQEFEQDI--EDLIPEEEVVVTV 535 Query: 525 SNRGWIR--SLKSHSVDLSALHFKEGDSLK---IALH---AHTTDRILLLSTDGKAYTLP 576 + G+I+ L ++ + G S++ + H +T IL S G+ Y L Sbjct: 536 TLAGYIKRVPLSTYRAQKRGGKGRVGSSVQNEDVITHLFIENTHTSILFFSNIGQVYNLK 595 Query: 577 AGNLLSG--RGHGEAIQLLIDLNHNQDIVTAFVY------DSTCKLLVVSSK-GNAFIVE 627 L G + G I LI + N+ I DS K ++ ++K GN + Sbjct: 596 VYKLPLGTPQSKGRPIINLISIKENETITNIMPMPAESENDSEKKYIIFATKHGNIRRND 655 Query: 628 ESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--DHVAVVGENRKLLIFSIDQIPEMSRGK 685 S+ GK +++ + + + VK +HV + +N K + F + + Sbjct: 656 LSDFKHIASNGKIAIRLDEGDSL-ISVKSCDEENHVLLATQNGKAIRFPVKDLRVFKSRT 714 Query: 686 GVRLQSYKDGGISDVICFKICEGLTW 711 +++ K G VI I +G+ Sbjct: 715 SDGVKAIKLAGNDAVISMTILKGINC 740 >gi|330993201|ref|ZP_08317138.1| DNA gyrase subunit A [Gluconacetobacter sp. SXCC-1] gi|329759752|gb|EGG76259.1| DNA gyrase subunit A [Gluconacetobacter sp. SXCC-1] Length = 933 Score = 394 bits (1013), Expect = e-107, Method: Compositional matrix adjust. Identities = 226/604 (37%), Positives = 341/604 (56%), Gaps = 54/604 (8%) Query: 10 NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69 + L ++ V++ + YLAYA+S I RA+PD+RDG KPVHRRI+++M E G Sbjct: 7 DPLPPSDMLPVTIEEEMRSSYLAYAMSVIVSRALPDVRDGLKPVHRRILYSMRESGFTHD 66 Query: 70 AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129 ++KSAR VG+V+GK HPHGD S+YD++VR+AQ + R LI GQGNFG++DGDS AA Sbjct: 67 KPYRKSARAVGDVMGKYHPHGDSSIYDAMVRMAQSWSMRVKLIDGQGNFGSVDGDSPAAM 126 Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189 RYTEAR+ + A +L +D D VDF+ Y+E + EP + P+ FPNLL NG SGIAVGMAT Sbjct: 127 RYTEARLAKAASFLLDDIDRDTVDFQPNYDESEQEPKILPAAFPNLLVNGASGIAVGMAT 186 Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249 +IP HN EI +A LA+I+ P+++++ LL+Y+ GPDFPTGG I+ R I ++ GRG Sbjct: 187 NIPPHNPGEIIDATLAMIERPDMTLDDLLDYVPGPDFPTGGTIL-GRAGIRSAFETGRGS 245 Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309 +RA+ +EE+ + I+VTEIPYQV K+ L E+IA+L+ K++ + DIRDES Sbjct: 246 VIIRAKAEIEEIRKDRRAIIVTEIPYQVNKATLQERIADLVRTKQVEGISDIRDESDRSG 305 Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369 ++ R P++++ ++ + ++T F +NM L G+ P++M L +L+ ++ R Sbjct: 306 MRIVIEIKREATPEVVLNQLYRFTQLQTSFGVNMLALDGGQ-PRLMGLKDVLEAFIRFRE 364 Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN-------------------- 409 +V+ RR+ F + R +L GL+IA NID +IA+IR Sbjct: 365 DVILRRARFDLNKARDRAHLLVGLVIAVANIDAVIALIRAAPDTAAARAALMARGWDAAD 424 Query: 410 --------EDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKI 461 D+ ++ + LTE Q IL LRL+ L LE +I+ EL + +I Sbjct: 425 VAPLLELIHDEGNVIVDGKVHLTEAQARGILELRLQRLTGLERDKIQQELSEVAV---RI 481 Query: 462 DSLLNSGKQQWNQIACEIREVK----EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517 + LL IA R ++ E+ S +L R T D+ +++IE Sbjct: 482 NDLLEI-------IASRPRRMEVMRNELVSIRAELATPRATDIADYAGDQT--DESLIEP 532 Query: 518 EPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569 + V I+ G+I R+ +A + D + + +AHT +L S+ Sbjct: 533 GQMVVTITREGFIKRTPLDVFRAQNRGGRGRTAAGRRGDDIIVRSFNAHTHQWVLFFSSG 592 Query: 570 GKAY 573 GKAY Sbjct: 593 GKAY 596 >gi|114047554|ref|YP_738104.1| DNA gyrase subunit A [Shewanella sp. MR-7] gi|113888996|gb|ABI43047.1| DNA gyrase subunit A [Shewanella sp. MR-7] Length = 944 Score = 394 bits (1013), Expect = e-107, Method: Compositional matrix adjust. Identities = 233/610 (38%), Positives = 349/610 (57%), Gaps = 55/610 (9%) Query: 11 TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70 T + ++ +++ L+ YL YA+S I RA+PD+RDG KPVHRR++ AMSE+ D+ Sbjct: 28 TDLASSISPINIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELKNDWNK 87 Query: 71 AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130 +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG++DGDSAAA R Sbjct: 88 PYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYTLVDGQGNFGSVDGDSAAAMR 147 Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190 YTE RM ++A +L ++++ VD+ Y+ + P V P++ PNLL NG+SGIAVGMAT+ Sbjct: 148 YTEIRMDKLAHQLLADLEKETVDYVPNYDGTEQIPAVLPTRVPNLLINGSSGIAVGMATN 207 Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250 IP HN+ E+ + LALI +P +SIE+L+E+I GPDFPT II R+ I+++Y+ GRG Sbjct: 208 IPPHNLTEVVKGCLALIADPALSIEQLMEHIPGPDFPTAAII-NGRKGIIDAYKTGRGRA 266 Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310 +RA VE G I+VTEIPYQV K++LIEKIAEL+ K+I + +RDES +D Sbjct: 267 VMRALAEVETEDNGRERIIVTEIPYQVNKAKLIEKIAELVKDKKIEGISGLRDESDKDGM 326 Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370 ++ R ++++ +++ + M+ F +NM L+ G+ P++ L +L+ ++ HRRE Sbjct: 327 RIVIEIKRGEVGEVVLNNLYAQTQMQCSFGINMVALTNGQ-PKLFNLKEMLECFILHRRE 385 Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV------------ 418 V+ RR+ F ++ R IL+ L +A NID IIA+I+ P V Sbjct: 386 VVTRRTVFELRKARERAHILEALAVALANIDPIIALIKASPTPADAKVKLVEQGWALGHV 445 Query: 419 -------------------------SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453 + LTE Q AIL LRL L LE +I +E + Sbjct: 446 QGMLEKAGDDAARPEWLEPEFGIRDGLYYLTEQQAQAILELRLHRLTGLEHDKIIAEYEE 505 Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513 LL + +L S ++ I E+ E+ + G R T + D + + Sbjct: 506 LLEFIAGLLFILRSPERLMEVIKEELEEI------LAEYGDARRTVINANEIDMSL--ED 557 Query: 514 MIEKEPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565 +I +E + V +S+ G+ + + + +A K+ D ++ L A+T D IL Sbjct: 558 LINEEDVVVTLSHLGYAKYQPLSDYQAQRRGGKGKAATKVKDEDFVEKLLVANTHDTILC 617 Query: 566 LSTDGKAYTL 575 S GK Y L Sbjct: 618 FSDFGKMYWL 627 >gi|254486349|ref|ZP_05099554.1| DNA gyrase, A subunit [Roseobacter sp. GAI101] gi|214043218|gb|EEB83856.1| DNA gyrase, A subunit [Roseobacter sp. GAI101] Length = 764 Score = 394 bits (1012), Expect = e-107, Method: Compositional matrix adjust. Identities = 232/612 (37%), Positives = 359/612 (58%), Gaps = 51/612 (8%) Query: 19 AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78 +V++ + YL YA+S I RAIPDLRDG KPVHRRII++M E G+ ++KSA+ Sbjct: 25 SVTIEHEMRTSYLDYAMSVIVSRAIPDLRDGLKPVHRRIIYSMYEKGITHDKTYRKSAKS 84 Query: 79 VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138 VG+V+G HPHGD ++YD+LVR+AQ F PLI GQGNFG++DGDSAAA RYTE+R+ + Sbjct: 85 VGDVMGSYHPHGDSAIYDALVRMAQDFSMSLPLIDGQGNFGSMDGDSAAAMRYTESRLDK 144 Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198 VA + +D++ V+F D Y+ ++ EP V P++FPN+L NG GIAVGMAT+IP HN+ E Sbjct: 145 VASFMTSDLDKETVNFIDNYDGKEREPTVLPARFPNMLVNGAGGIAVGMATNIPPHNLGE 204 Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258 + +A ALI+NP+++ E+L+EYI GPDFPTGGI++ R ++Y GRG +RA+ V Sbjct: 205 VIDACQALIENPDLTSEELIEYIPGPDFPTGGIML-GRAGARKAYLEGRGSVIMRAKTRV 263 Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKN 317 EE+ + + I++ EI YQV K+ +IEKIAE + K+I + ++DES + VR+V+ K Sbjct: 264 EEIRKDRFAIIIDEICYQVNKASMIEKIAEQVREKKIEGIAHVQDESDRNGVRVVIELK- 322 Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377 R +++M ++ + M+T F NM L+ GR P+ + L L ++ R +V+ RR++ Sbjct: 323 RDATAEVVMNQLYRFTPMQTYFGCNMLALNGGR-PEQLTLRKFLTYFIDFREDVVARRTA 381 Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE----DKPKPVMVSR------------- 420 F ++ R IL GL +A NIDE++A IR+ + + +M R Sbjct: 382 FLLRKARERSHILCGLAVAVTNIDEVVATIRSSADAAEAREKLMTRRWPAESILPYIALI 441 Query: 421 ------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSG 468 ++L+E Q AIL LRL+ L ++ ++ EL+ L + ++ +L S Sbjct: 442 DDPTHTANDDGTYNLSEAQARAILELRLQRLTQIGVKEVTDELEELAKKIKEYLEILGSR 501 Query: 469 KQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRG 528 ++ + I+ E+ EVK+ F+ RRT + S + +I +E + V +++ G Sbjct: 502 ERIMSIISDELAEVKDQFAVP-----RRTEIVDWS---GDMDDEDLIAREDMVVTVTSGG 553 Query: 529 WI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL 580 +I RS + +S + KE D + A+T ++L +TDG Y L L Sbjct: 554 YIKRTPLVDFRSQRRGGKGVSGMQTKEEDVVTTLFVANTHTQLLFFTTDGMVYKLKTWRL 613 Query: 581 LSGR--GHGEAI 590 G G+AI Sbjct: 614 PQGSRTSKGKAI 625 >gi|307297530|ref|ZP_07577336.1| DNA gyrase, A subunit [Thermotogales bacterium mesG1.Ag.4.2] gi|306916790|gb|EFN47172.1| DNA gyrase, A subunit [Thermotogales bacterium mesG1.Ag.4.2] Length = 808 Score = 394 bits (1012), Expect = e-107, Method: Compositional matrix adjust. Identities = 265/758 (34%), Positives = 416/758 (54%), Gaps = 56/758 (7%) Query: 30 YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89 Y+ Y++S I RAIPDLRDG KPV RRI+ MSE+GL FKKSARIVGEV+GK HPH Sbjct: 18 YMLYSMSVIVGRAIPDLRDGLKPVQRRILFGMSELGLHHNQGFKKSARIVGEVMGKFHPH 77 Query: 90 GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDE 149 GD ++YD+LVR+AQPF RYPL+ GQGNFG+ID D AA RYTEARM +AE +LQ +D+ Sbjct: 78 GDAAIYDALVRMAQPFSMRYPLVEGQGNFGSIDRDPPAAMRYTEARMETLAEELLQDIDK 137 Query: 150 DAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDN 209 + V ++ SEP V P+K PNLL NGTSGIAVGM TSIP HN+ EI +A LI + Sbjct: 138 NTVPMMPNFDGSLSEPDVLPTKIPNLLLNGTSGIAVGMMTSIPPHNLVEIIDAISLLIKD 197 Query: 210 PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIV 269 PE S+ LL +I GPDFPTGG+I+++ SI Y+ G+G VRA +EE G GS IV Sbjct: 198 PECSVSDLLRHIKGPDFPTGGMIMDA-ASIPSIYQEGKGRITVRAIAEIEESG-GSSQIV 255 Query: 270 VTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESI 329 V+EIPY K+ +IE+I R + +IRDES + V+ R DP++++ + Sbjct: 256 VSEIPYNTSKADIIEQIVNATQNHRDLQIRNIRDESDQKGLRVVIELKRGADPNVVLNLL 315 Query: 330 FMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEI 389 F + ++T F +NM V+ + P+VM L IL+ +L+HR V+ ++ + ++ +R I Sbjct: 316 FKHTQLQTTFSVNMLVIDEKKRPRVMNLKQILQGFLSHRFNVIRSKTEYDLEQASKRAHI 375 Query: 390 LKGLLIAYLNIDEIIAIIRN----EDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEY 445 ++GL A +ID ++ IIRN E+ K +M + +T+ Q AIL++R+ L +E Sbjct: 376 VEGLTKATRSIDTVVDIIRNSANSEEASKNLMET-LEVTQEQSSAILDMRMGKLTGMEIE 434 Query: 446 QIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRA 505 ++ +E +L+A+ + +L S ++ + I E+ E+K + G R T ++ Sbjct: 435 KLLNEYKDLVAKINEYRMILASDEKVYGIILDELNEIKAKY------GDARRTRIDLGNG 488 Query: 506 DKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFKEGDSLKIALHAHT 559 ++ +I E I ++++ +G+I+S S + + GD ++ T Sbjct: 489 TDFNIED-VIPDEDIVLMVTKKGYIKSTPLESYRKQGRGGKGVIGVRTGDE-DFVVNILT 546 Query: 560 TDRI---LLLSTDGKAYTLPAGNLLSGRGHGEAIQLL-----IDLNHN-QDIVTAFVYDS 610 T R+ +++++ GKAY L + +++ +LL ID + N Q +++ + Sbjct: 547 TTRLSKTVIITSKGKAYVL-SNHIIDHSSRDSKGKLLANYIKIDPDENVQAVLSTRKEEV 605 Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT-----GDHVAVVG 665 K LV++++ E E N R + +K S + V+ + D + + Sbjct: 606 QGKQLVITTRSGKIKKTEFEAFLNVR--ISGIKAISLNEGDRVIDASLTSREDDTIIIST 663 Query: 666 ENRKLLIFSIDQIPEMSRGK----GVRLQSYKDGGISDVICFKICEGLTWIDSAGR---- 717 +N ++ F +DQ+ M R G+RL+ + ++++ + L G Sbjct: 664 KNGMVIRFPLDQVRSMGRSAAGVMGIRLKKNDEVVGANIVASEDTRFLLTATEKGGGKRT 723 Query: 718 --SYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753 S RS+N RGG+G G + GK + + Sbjct: 724 CLSEYRSQN--------RGGLGVKNIYGLEKIGKVIGT 753 >gi|297538378|ref|YP_003674147.1| DNA gyrase subunit A [Methylotenera sp. 301] gi|297257725|gb|ADI29570.1| DNA gyrase, A subunit [Methylotenera sp. 301] Length = 882 Score = 394 bits (1012), Expect = e-107, Method: Compositional matrix adjust. Identities = 255/726 (35%), Positives = 394/726 (54%), Gaps = 71/726 (9%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 +SL + YL YA+S I RA+PD+RDG KPVHRR++ AM E+ D+ +KKSARIV Sbjct: 11 ISLEDEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELSNDYNKPYKKSARIV 70 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGD +VYD++VR+AQ F RY L+ GQGNFG++DGD+AAA RYTE RM+++ Sbjct: 71 GDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMSKI 130 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A +L +D++ VDF Y+ + EP++ P++ PNLL NG+SGIAVGMAT+IP HN+ E+ Sbjct: 131 AHELLADIDKETVDFGPNYDGSEHEPLIMPARIPNLLINGSSGIAVGMATNIPPHNINEV 190 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 +A AL+ +PE+ IE+L+E + PDFPT GII + + E YR GRG +R R VE Sbjct: 191 LDACFALLKDPEMGIEELIELVPAPDFPTAGIIYGTV-GVKEGYRTGRGRVVMRGRTHVE 249 Query: 260 EVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318 ++ RG ++V E+PYQV K +EKIAEL+ K+I + D+RDES + V+ R Sbjct: 250 DLERGGRQALIVDELPYQVNKKTFVEKIAELVNEKKIEGISDLRDESDKSGMRVVIELKR 309 Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378 ++++ +++ + ++ F +NM L G+ P+++ L +L+ +L HRREV+ RR+ F Sbjct: 310 GEIAEVVLNNLYKQTQLQDTFGMNMVALLDGQ-PRLLNLKQMLEAFLRHRREVITRRTVF 368 Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP-------------KPV---MVSR-- 420 ++ R IL+GL +A N+DE+IAII+ P PV M+ R Sbjct: 369 ELKKARARGHILEGLAVALANVDEMIAIIKAAPTPPEAKVALMAKAWNSPVVEEMLKRAA 428 Query: 421 -------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKI 461 + L++ Q IL +RL+ L LE+ ++ SE ++ + Sbjct: 429 MEASRPEGLSIEFGLLPNGYKLSDIQAQEILQMRLQRLTGLEQDKVVSEYKEVMDIIADL 488 Query: 462 DSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPIT 521 +L + + I E+ E+++ F +RR+ V+ A +L+ I + + Sbjct: 489 LDILATPARVTAIINDELTEIRKQFGD-----KRRSEI--VANAQDLSLED-FITPQDVV 540 Query: 522 VVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG--- 570 V +S+ G++ R+ + A KE D + A+T D IL S+ G Sbjct: 541 VTLSHTGYVKSQPLDEYRAQRRGGRGKQAAQTKEDDFIDKMFVANTHDYILCFSSRGQVY 600 Query: 571 --KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD---IVTAFVYDSTCKLLVVSSKGNAFI 625 K Y +P G S G G+ I L L + I++ +D + + +S G Sbjct: 601 WLKVYEVPQG---SRTGRGKPIVNLFPLEEGEKINAILSVKEFDENHFIFMATSLGTVKK 657 Query: 626 VEESEIIANTRKGKTFLKVSSEEKMKLVVKVT--GDHVAVVGENRKLLIFSIDQIPEMSR 683 S+ AN RK E + ++T + V +V K + F+ D + M R Sbjct: 658 TPLSD-FANPRKSGIIAINLDEGDFLIGAEITNGANDVILVSNGGKAVWFTEDDVRSMGR 716 Query: 684 G-KGVR 688 +GVR Sbjct: 717 ATRGVR 722 >gi|113970257|ref|YP_734050.1| DNA gyrase subunit A [Shewanella sp. MR-4] gi|113884941|gb|ABI38993.1| DNA gyrase subunit A [Shewanella sp. MR-4] Length = 946 Score = 394 bits (1012), Expect = e-107, Method: Compositional matrix adjust. Identities = 237/611 (38%), Positives = 353/611 (57%), Gaps = 57/611 (9%) Query: 11 TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70 T + ++ +++ L+ YL YA+S I RA+PD+RDG KPVHRR++ AMSE+ D+ Sbjct: 28 TDLASSISPINIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELKNDWNK 87 Query: 71 AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130 +KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG++DGDSAAA R Sbjct: 88 PYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYTLVDGQGNFGSVDGDSAAAMR 147 Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190 YTE RM ++A +L ++++ VD+ Y+ + P V P++ PNLL NG+SGIAVGMAT+ Sbjct: 148 YTEIRMDKLAHQLLADLEKETVDYVPNYDGTEQIPAVLPTRVPNLLINGSSGIAVGMATN 207 Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250 IP HN+ E+ + LALI +P +SIE+L+E+I GPDFPT II R+ I+++Y+ GRG Sbjct: 208 IPPHNLTEVVKGCLALIADPALSIEQLMEHIPGPDFPTAAII-NGRKGIIDAYKTGRGRA 266 Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-V 309 +RA VE G I+VTEIPYQV K++LIEKIAEL+ K+I + +RDES +D + Sbjct: 267 VMRALAEVETEDNGRERIIVTEIPYQVNKAKLIEKIAELVKDKKIEGISGLRDESDKDGM 326 Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369 RIV+ K R ++++ +++ + M+ F +NM L+ G+ P++ L +L+ ++ HRR Sbjct: 327 RIVIEIK-RGEVGEVVLNNLYAQTQMQCSFGINMVALTNGQ-PKLFNLKEMLECFILHRR 384 Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV----------- 418 EV+ RR+ F ++ R IL+ L +A NID IIA+I+ P V Sbjct: 385 EVVTRRTVFELRKARERAHILEALAVALANIDPIIALIKASPTPADAKVKLVEQGWALGH 444 Query: 419 --------------------------SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELD 452 + LTE Q AIL LRL L LE +I +E + Sbjct: 445 VQGMLEKAGDDAARPEWLEPEFGIRDGLYYLTEQQAQAILELRLHRLTGLEHDKIIAEYE 504 Query: 453 NLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ 512 LL + +L S ++ I E+ E+ + G R T + D + + Sbjct: 505 ELLEFIAGLLFILRSPERLMEVIKEELEEI------LAEYGDARRTVINANEIDMSL--E 556 Query: 513 AMIEKEPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRIL 564 +I +E + V +S+ G+ + + + +A K+ D ++ L A+T D IL Sbjct: 557 DLINEEDVVVTLSHLGYAKYQPLSDYQAQRRGGKGKAATKVKDEDFVEKLLVANTHDTIL 616 Query: 565 LLSTDGKAYTL 575 S GK Y L Sbjct: 617 CFSDFGKMYWL 627 >gi|58616969|ref|YP_196168.1| DNA gyrase subunit A [Ehrlichia ruminantium str. Gardel] gi|58416581|emb|CAI27694.1| DNA gyrase subunit A [Ehrlichia ruminantium str. Gardel] Length = 898 Score = 394 bits (1012), Expect = e-107, Method: Compositional matrix adjust. Identities = 229/634 (36%), Positives = 361/634 (56%), Gaps = 57/634 (8%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 NV VS+ LE+ YL+YA+S I RAIPD+RDG KPVHRRI+++M + G D+ +KK+ Sbjct: 6 NVIPVSIEQELEDSYLSYAMSVIVSRAIPDIRDGLKPVHRRILYSMYKSGYDYSKPYKKA 65 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 AR+VG+V+GK HPH D ++YDSLVR+AQ F PLI QGNFG+IDGD A+ RYTEAR Sbjct: 66 ARVVGDVMGKYHPHADAAIYDSLVRMAQDFSLLLPLIDSQGNFGSIDGDPPASMRYTEAR 125 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 + + A +L +DED VDFR Y+ +SEPVV P++FPN+L NG G+AVGM+T+IPSHN Sbjct: 126 LARAAHFLLNDIDEDTVDFRPNYDGNESEPVVLPAEFPNILVNGAGGVAVGMSTNIPSHN 185 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 + E+ +A +A IDNP+I+ ++L++ + GPDFPTGG I+ I ++ G+G V+ + Sbjct: 186 LGEVVDACIAYIDNPDITFDELIQIVHGPDFPTGGTIL-GDAGIRSAFMTGKGTIIVQGK 244 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE-DVRIVLF 314 VE++ G I++ EIPYQV K++LIE+I EL+ KRI + D+RDES + +R+ + Sbjct: 245 THVEDLPSGKQAIIIDEIPYQVNKAKLIERIHELVKEKRIEGILDLRDESNKMGIRVAIE 304 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K + + +++ I L+ + T F +N VL + P+VM L I+ ++ +R+EVL R Sbjct: 305 LK-KQVSHQVVLNQILGLTPLRTSFSINTLVLDNNK-PKVMSLLDIISTFIEYRKEVLTR 362 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE------------------------ 410 R+ FR++ + + + G+ IA LNID++I+IIR+ Sbjct: 363 RTQFRLRKVREKAHLYIGMYIAVLNIDQVISIIRSSRDTAEATKRLLECKWSALASVKEM 422 Query: 411 -----DKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLL 465 D V+ LT QV +IL ++L+ L LE+ +++ +L ++++ ++ LL Sbjct: 423 IELVADSKSIVVNDVCQLTGVQVKSILEMKLQRLTSLEKEKLELDLKSMVSMIKQYTELL 482 Query: 466 NSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVIS 525 + + + + E+K L R T + S + T + +I KE + V ++ Sbjct: 483 GNKESLLKLVKNGLEEIK------AKLAVPRKTTIDYSHFE--TDVEDLIPKEDMVVTVT 534 Query: 526 NRGWIRSLKSHSVDLS--------ALHFKEGDSLKIALHAHTTDRILLLSTDG-----KA 572 G+I+ +K + +E D + +T +L S G K Sbjct: 535 MSGYIKRVKLSNYRAQRRGGKGRIGQAIREEDVITNLFVVNTHTSVLFFSNIGRVYKLKV 594 Query: 573 YTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606 Y LP G+ S G ++ + L+ N+ I + Sbjct: 595 YKLPLGDPTS---RGRSLVNIFPLSENEVITSVM 625 >gi|213962139|ref|ZP_03390403.1| DNA gyrase, A subunit [Capnocytophaga sputigena Capno] gi|213955145|gb|EEB66463.1| DNA gyrase, A subunit [Capnocytophaga sputigena Capno] Length = 837 Score = 394 bits (1012), Expect = e-107, Method: Compositional matrix adjust. Identities = 231/610 (37%), Positives = 367/610 (60%), Gaps = 33/610 (5%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 E + V + ++ Y+ Y++S I RA+PD+RDG KPVHRR+++ M +MG+ +KK Sbjct: 5 EKLIPVDISEEMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMFDMGVLSNRPYKK 64 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 SA IVG+V+GK HPHGD +VYD++VR+AQ + RY L+ GQGNFG++ GD AA RYTEA Sbjct: 65 SAAIVGDVLGKYHPHGDTAVYDTMVRMAQEWSLRYRLVDGQGNFGSMGGDPPAAMRYTEA 124 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 RM +++E +L +D++ VD + TY++ EP V P++ PNLL NG++GIAVGMAT++ H Sbjct: 125 RMRKLSEDMLIDIDKETVDHQLTYDDSREEPTVLPTRIPNLLVNGSAGIAVGMATNMAPH 184 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 N+ E+ + +A I+N +I I++L++YI PDFPTGGII E + E+++ GRG VRA Sbjct: 185 NLSEVIDGTIAYINNNDIEIDELIKYIKAPDFPTGGIIY-GYEGVKEAFKTGRGRVIVRA 243 Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE-DVRIVL 313 + +EV RG CIVVTE+PYQV S L++K ++L+ ++ + D+RDESA +RIV Sbjct: 244 KAEFQEV-RGKECIVVTEVPYQVDTSILLKKTSDLVKEGKLEGITDVRDESARGKIRIVY 302 Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373 K R P++++ ++F ++++T F +N L GR P+ + L ++ ++ HR EV++ Sbjct: 303 ILK-RDAVPNVVLNNLFKHTELQTSFSINNIALVKGR-PEQLNLKDLIYHFVEHRHEVVY 360 Query: 374 RRSSFRMQAIDRRVEILKGLL--IAYLN-IDEIIAIIRNEDKPKPVMVSRFSLTENQVDA 430 RR+ + ++ R+ IL+G + +A N + + I IIR DKPK +++ F LT+ Q +A Sbjct: 361 RRTDYELRKAKERIHILEGFMKVMATENTMGKAIEIIRFHDKPKEDLIAEFDLTDIQAEA 420 Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490 IL L LR + K Q K E + LAE ++ +L +++ I E+ E+KE + + Sbjct: 421 ILALALRRINKALILQTKEEYEQKLAEIRDLEDILARKERRTEIIKEELLEIKEKYGDA- 479 Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHS------VDLSA 542 RR+T + A + MI + + + IS+ G+I+ SL + V A Sbjct: 480 ----RRST---IEYAGGEFSVEDMIPDDKMVITISHAGYIKRTSLSEYKIQSRGGVGQKA 532 Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKA-----YTLPAGNLLSGRGHGEAIQLLIDLN 597 ++ D L+ + +L + GK Y +P G S G A+Q LI++ Sbjct: 533 STTRDQDFLEHLFVSSNHQYLLFFTQKGKCFWMRVYEIPEG---SKTAKGRAVQNLINIE 589 Query: 598 HNQDIVTAFV 607 + D + AFV Sbjct: 590 QD-DKIKAFV 598 >gi|295317483|gb|ADF97860.1| DNA gyrase, A subunit [Clostridium botulinum F str. 230613] Length = 819 Score = 394 bits (1012), Expect = e-107, Method: Compositional matrix adjust. Identities = 251/693 (36%), Positives = 404/693 (58%), Gaps = 36/693 (5%) Query: 12 LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71 L E + V + +++ Y+ YA+S I RA+PD+RDG KPVHRRII++M +GL Sbjct: 2 LNEGKILPVDVSKEMKKCYIDYAMSVIAGRALPDVRDGLKPVHRRIIYSMQGLGLAPEKG 61 Query: 72 FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131 ++K ARIVG+V+GK HPHGD +VY++LVR+AQ F RY L+ G GNFG++DGD AAA RY Sbjct: 62 YRKCARIVGDVLGKYHPHGDTAVYEALVRMAQDFSIRYTLVDGHGNFGSVDGDGAAAMRY 121 Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191 TEA+M++++ +++ ++++ VDF ++ E+ EP V PS+FPNLL NG++GIAVGMAT+I Sbjct: 122 TEAKMSKISMELIKDINKNTVDFIPNFDGEEEEPSVLPSRFPNLLVNGSAGIAVGMATNI 181 Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251 P HN+ E+ + + LIDN +++I L+ I GPDFPT G+IV +R I E+Y GRG Sbjct: 182 PPHNLTEVIDGIIMLIDNEDVNILDLMTKIKGPDFPTFGLIVGTR-GIREAYETGRGKVI 240 Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VR 310 +RA+ +EE +G IVVTEIPYQV KS+LIE +A L+ K+I + D+RDES D +R Sbjct: 241 IRAKAEIEE-EKGRNRIVVTEIPYQVNKSKLIENMANLVKDKKINGISDLRDESDRDGMR 299 Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370 IV+ K R +P++++ ++ + ++ F + M L + PQV+ L IL ++ ++E Sbjct: 300 IVIELK-RDANPNIVLNQLYKHTKLQDTFGIIMLAL-VNNQPQVLNLKEILVNYVEFQKE 357 Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQ 427 V+ RR+ F + R IL+GL IA +IDE+I +IR N + K +++ F+L+E Q Sbjct: 358 VIRRRTKFDLDKALARAHILEGLRIALDHIDEVIKLIRSSKNAAEAKEGLMNNFNLSEKQ 417 Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487 AIL+++L+ L LE +I+ E L+ + +L+ + + I E+ E+K + Sbjct: 418 AQAILDMKLQRLTGLEREKIEEEYKELMEKISYFREILDKEELVLSIIKEELIEIKNKY- 476 Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSVD 539 G R T E+ + + + +IE + + V +++ G+I+ L K Sbjct: 477 -----GDERKT--EIVKGEHDIDIEDLIEDKKVIVTLTHGGYIKRLDMDTYSSQKRGGKG 529 Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL-LSGR-GHGEAIQLLIDLN 597 + A K+ D ++ T IL + GK Y L A + +GR G I +I + Sbjct: 530 IQATSTKQDDFIENMFVTSTHSTILFFTNRGKVYKLKAYEIPEAGRTAKGTNIVNIIPIE 589 Query: 598 HNQDIVTAFVY---DSTCKLLVVSSKGNAFIVEESEI--IANTRKGKTFLKVSSEEKMKL 652 +N+ I T D ++ + G I++++EI ++ RKG E+ + Sbjct: 590 NNEKIQTVIGLKDIDDMKHFVMCTRNG---IIKKTEISKYSSIRKGGLNAINLREDDELI 646 Query: 653 VVKVT--GDHVAVVGENRKLLIFSIDQIPEMSR 683 VK+T + + +V +N + F+ + + M R Sbjct: 647 DVKMTKGNNEIIIVTQNGYCIRFNEEDVRPMGR 679 >gi|260425958|ref|ZP_05779937.1| DNA gyrase, A subunit [Citreicella sp. SE45] gi|260420450|gb|EEX13701.1| DNA gyrase, A subunit [Citreicella sp. SE45] Length = 915 Score = 394 bits (1012), Expect = e-107, Method: Compositional matrix adjust. Identities = 244/677 (36%), Positives = 372/677 (54%), Gaps = 57/677 (8%) Query: 19 AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78 +S+ ++ YL YA+S I RAIPDLRDG KPVHRRI++ + E G +++K A Sbjct: 26 GISIIDEMKSSYLDYAMSVIVSRAIPDLRDGLKPVHRRILYTLWENGQTKSKSYRKCATA 85 Query: 79 VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138 VG+V+G+ HPHGD +VYD+LVR+AQ F PLI GQGNFG++DGD AAYRYTE+R+ + Sbjct: 86 VGDVMGRYHPHGDSAVYDALVRMAQDFSMSLPLIDGQGNFGSMDGDPPAAYRYTESRLER 145 Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198 AE +L+ +D+D VDF Y E +EPVV P+++PN+L NG GIAVGMAT IP HN+ E Sbjct: 146 TAEALLEDIDKDTVDFVPNYANERNEPVVLPARYPNVLVNGAEGIAVGMATRIPPHNLGE 205 Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258 + +A LALI+ P++S E+L+EYI PDFPTGG+I+ R ++Y GRG +RA+ + Sbjct: 206 VIDATLALIEQPDLSSEQLIEYIPAPDFPTGGVIL-GRSGARKAYLEGRGSVIIRAKTRI 264 Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKN 317 EE+ R + IV+ EIPYQV K+ +IE+IAE + K+I + ++DES VR+V+ K Sbjct: 265 EEIKRDRYAIVIDEIPYQVNKATMIERIAECVRDKKIEGIAHVQDESDRSGVRVVVELK- 323 Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377 R ++++ +F + M+ F NM L+ GR P+ + L L +L R +V+ RR++ Sbjct: 324 RDATAEVVLNQLFRFTPMQVSFGCNMLALNGGR-PEQLTLRAFLTAFLDFREDVVARRTA 382 Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE--------------------------- 410 + ++ R IL GL +A N+DE++A IR Sbjct: 383 YLLRKARERSHILCGLAVAVANVDEVVATIRASADAAEARDKLMTRRWPAHEIAPYIQLI 442 Query: 411 DKPKPVMV--SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSG 468 D P M ++L+E Q AIL LRL+ L +L ++ EL+ L + ++ +L S Sbjct: 443 DDPTHKMNEDGTYNLSETQARAILELRLQRLTQLGVKEVTDELEELAKKIKEYLEILGSR 502 Query: 469 KQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRG 528 ++ I E+ VKE F+ RRT E++ + +IE+E + V ++ G Sbjct: 503 ERIMEIITNEMIAVKEQFAVP-----RRT---EIADWAGDMDDEDLIEREDMVVTVTAGG 554 Query: 529 WI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL 580 +I R+ K +S KE D + A+T ++L +T+G AY L L Sbjct: 555 YIKRTPLAEFRAQKRGGKGVSGGSLKEDDVVTQLFVANTHTQLLFFTTEGMAYKLKCWRL 614 Query: 581 LSG--RGHGEAIQLLIDLNHNQDIVTAFVYD------STCKLLVVSSKGNAFIVEESEII 632 G G+AI ++ + + D +++ +SKG+ S+ Sbjct: 615 PQGGRTSKGKAIVNILPIPQGVSVAAIMPVDRDEDEWDDLQIVFATSKGSVRRNRLSDFT 674 Query: 633 ANTRKGKTFLKVSSEEK 649 R GK +K E++ Sbjct: 675 NVMRNGKIAMKFEGEDE 691 >gi|153806299|ref|ZP_01958967.1| hypothetical protein BACCAC_00555 [Bacteroides caccae ATCC 43185] gi|149130976|gb|EDM22182.1| hypothetical protein BACCAC_00555 [Bacteroides caccae ATCC 43185] Length = 856 Score = 394 bits (1012), Expect = e-107, Method: Compositional matrix adjust. Identities = 259/777 (33%), Positives = 419/777 (53%), Gaps = 57/777 (7%) Query: 12 LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71 L ++ + +++ ++ Y+ Y++S I RA+PD+RDGFKPVHRRI++ M E+G Sbjct: 2 LEQDRIIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILYGMMELGNTSDKP 61 Query: 72 FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131 +KKSARIVGEV+GK HPHGD SVY ++VR+AQ + RYPL+ GQGNFG++DGDS AA RY Sbjct: 62 YKKSARIVGEVLGKYHPHGDSSVYFAMVRMAQEWAMRYPLVDGQGNFGSVDGDSPAAMRY 121 Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191 TEAR+ ++ E ++ + ++ VDF ++ EP V P++ PNLL NG SGIAVGMAT++ Sbjct: 122 TEARLNKLGEAMMDDLYKETVDFEPNFDNTLVEPKVMPTRIPNLLVNGASGIAVGMATNM 181 Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251 P HN+ E+ EA A IDNPEI++E+L+ ++ PDFPTGG I + E+Y GRG Sbjct: 182 PPHNLVEVIEACDAYIDNPEITVEELMNFVKAPDFPTGGYIY-GVSGVREAYLTGRGRVI 240 Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVR 310 +RA+ + E+G+ IV+TEIPY V K+ LI+ IA+L+ KRI + + DES E +R Sbjct: 241 MRAKAEI-EIGQTHDKIVITEIPYNVNKAELIKYIADLVNDKRIEGISNANDESDREGMR 299 Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370 IV+ K R + +++ ++ ++ ++T F +N L GR P+ + L ++K ++ HR E Sbjct: 300 IVIDVK-RDANASVVLNKLYKMTALQTSFGVNNVALVHGR-PKTLNLRDLIKYFIEHRHE 357 Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQ 427 V+ RR+ F ++ R IL+GL+IA NIDE+I IIR P ++ RF+LTE Q Sbjct: 358 VVIRRTEFDLRKARERAHILEGLIIASDNIDEVIRIIRAAKTPNDAIAGLIERFNLTEIQ 417 Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487 AI+ +RLR L L + Q+ +E + ++ + ++S+L + + E+ EVK + Sbjct: 418 SRAIVEMRLRQLTGLMQDQLHAEYEEIMKQIAYLESILADDEVCRKVMKDELLEVKAKYG 477 Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVD 539 RR+ E+ + + + + + + IS+ G+I R+ V Sbjct: 478 DE-----RRS---EIVYSSEEFNPEDFYADDQMIITISHMGYIKRTPLTEFRAQNRGGVG 529 Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLN 597 ++ D ++ A + ++ + GK Y L + G G AIQ L++++ Sbjct: 530 SKGTETRDEDFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTKNSKGRAIQNLLNID 589 Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG---KTFLKVSSEEKMKLVV 654 + D VTA+ L V + ++ + ++ T+KG KT L+ S + V Sbjct: 590 SD-DNVTAY--------LRVKNLDDSEFINNHYVLFCTKKGVIKKTLLEQYSRPRQNGVN 640 Query: 655 KVT---------------GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGIS 698 +T + + + N + + F + M R GVR + + G Sbjct: 641 AITIREDDSVIEVRMTNGNNEIIIANRNGRAIRFHEAAVRVMGRTATGVRGITLDNDGQD 700 Query: 699 DV---ICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752 +V IC K E + + + + Y + RGG G ++GK ++ Sbjct: 701 EVVGMICIKDLETESVMVVSEQGYGKRSEIEDYRKTNRGGKGVKTMNITEKTGKLVT 757 >gi|238913484|ref|ZP_04657321.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] Length = 501 Score = 394 bits (1012), Expect = e-107, Method: Compositional matrix adjust. Identities = 218/493 (44%), Positives = 308/493 (62%), Gaps = 42/493 (8%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + V++ L+ YL YA+S I RA+PD+RDG KPVHRR+++AM+ +G D+ A+KKSA Sbjct: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG+IDGDSAAA RYTE R+ Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 ++A ++ ++++ VDF D Y+ + P V P+K PNLL NG+SGIAVGMAT+IP HN+ Sbjct: 128 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ LA IDN +ISIE L+E+I GPDFPT II R I E+YR GRG +RAR Sbjct: 188 TEVINGCLAYIDNEDISIEGLMEHIPGPDFPTAAII-NGRRGIEEAYRTGRGKVYIRARA 246 Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314 VE + G I+V EIPYQV K+RLIEKIAEL+ KR+ + +RDES +D +RIV+ Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKDGMRIVIE 306 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K ++ ++++ +++ + ++ F +NM L G+ P++M L I+ ++ HRREV+ R Sbjct: 307 VKRDAVG-EVVLNNLYSQTQLQVSFGINMVALHHGQ-PKIMNLKDIISAFVRHRREVVTR 364 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----------- 420 R+ F ++ R IL+ L IA NID II +IR P K ++SR Sbjct: 365 RTIFELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAALISRPWDLGNVAAML 424 Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457 + LTE Q AIL+LRL+ L LE ++ E LL + Sbjct: 425 ERAGDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQ 484 Query: 458 KEKIDSLLNSGKQ 470 ++ +L S + Sbjct: 485 IAELLHILGSADR 497 >gi|300172308|ref|YP_003771473.1| DNA gyrase subunit A [Leuconostoc gasicomitatum LMG 18811] gi|299886686|emb|CBL90654.1| DNA gyrase, A subunit [Leuconostoc gasicomitatum LMG 18811] Length = 851 Score = 394 bits (1012), Expect = e-107, Method: Compositional matrix adjust. Identities = 229/597 (38%), Positives = 353/597 (59%), Gaps = 36/597 (6%) Query: 26 LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85 ++ +L+YA+S I RA+PD+RDG KPVHRRI+++M E G KKSARIVG+V+GK Sbjct: 18 MKTSFLSYAMSVIVARALPDVRDGMKPVHRRILYSMIEQGNTPDKPHKKSARIVGDVMGK 77 Query: 86 LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145 HPHGD ++Y+S+VR+AQPF R+ L+ G GNFG++DGDSAAA RYTEAR+++VA +++ Sbjct: 78 YHPHGDSAIYESMVRMAQPFSYRHMLVDGHGNFGSVDGDSAAAMRYTEARLSKVAMEMVR 137 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 +++D V+F Y+ E+ EP V P++FPNLL NG +GIAVGMAT+IP+HN+ E+ A Sbjct: 138 DLNKDTVNFIPNYDGEEREPEVLPARFPNLLVNGATGIAVGMATNIPTHNLAEVISALHI 197 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265 L++NPE + L+E + GPDFPTGGI++ + I +Y GRG VRA+ +E+ G Sbjct: 198 LMNNPEATTMDLMEALPGPDFPTGGIVM-GKSGIRRAYETGRGRVTVRAKVDIEQTKTGK 256 Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325 I+VTE+PY V K+RLIE+I+EL KRI + IRDES D V R ++ Sbjct: 257 EQIIVTELPYAVNKARLIERISELARDKRIEGITGIRDESDRDGLRVSIDVRRDASASVI 316 Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385 + +++ + ++T F NM ++ G+ PQ M L IL +L H+REV+ RR++F +Q Sbjct: 317 LNNLYKETLLQTNFSFNMLAINGGK-PQTMSLKEILVAYLIHQREVIRRRTAFDLQKAQA 375 Query: 386 RVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLTENQVDAILNLRLRSLRKL 442 R IL+GL IA +IDEII+IIR+ ++ K ++ + L++ Q AIL++RL L L Sbjct: 376 RAHILEGLRIALDHIDEIISIIRSSATSEEAKTRLIDGYLLSDKQAQAILDMRLVRLTGL 435 Query: 443 EEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEV 502 E +I+ E L+A + +L + +++ +QI + E+ EI +K D R +V Sbjct: 436 ERDKIEDEYQKLVALITDLKDIL-AHEERVDQIIYD--ELLEIQTKFGDARRTELQVGDV 492 Query: 503 SRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD--------LSALHFKEGDSLKIA 554 + + L + + V ++ G+I+ + + ++ + D + Sbjct: 493 TNLEDEDLIEEED----VIVTLTRNGYIKRVPQAEFKAQNRGGRGVQGINVNDEDFVDQM 548 Query: 555 LHAHTTDRILLLSTDGKAYTL---------------PAGNLLSGRGHGEAIQLLIDL 596 + T D +L + GK Y + P NLL G E IQ +I++ Sbjct: 549 IATSTHDTLLFFTNKGKVYRMKGYEVPEYGRQAKGIPVVNLLKFEGD-EKIQTVINV 604 >gi|114707076|ref|ZP_01439975.1| DNA gyrase subunit A [Fulvimarina pelagi HTCC2506] gi|114537626|gb|EAU40751.1| DNA gyrase subunit A [Fulvimarina pelagi HTCC2506] Length = 950 Score = 394 bits (1012), Expect = e-107, Method: Compositional matrix adjust. Identities = 241/679 (35%), Positives = 380/679 (55%), Gaps = 64/679 (9%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 VS+ ++ YL YA+S I RA+PD+RDG KPVHRRI++AM EMGL ++KSA +V Sbjct: 27 VSIIDEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYAMHEMGLTSTRPYRKSAGVV 86 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 GEV+GK HPHGD ++YD+LVR+AQ + R LI GQGN+G+IDGD AA RYTE R+ ++ Sbjct: 87 GEVMGKYHPHGDSAIYDALVRMAQDWSLRDRLIEGQGNYGSIDGDPPAAMRYTECRLRKI 146 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 ++ +L +D++ VDF++ Y+ + EPVV P+ FPNLL NG+ GIAVGMAT+IP HN+ E+ Sbjct: 147 SDTLLADIDKETVDFQENYDGREQEPVVLPAGFPNLLVNGSGGIAVGMATNIPPHNLGEV 206 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 + +ALIDNP I++ +++E I GPDFPTG I++ + I +Y GRG +R + E Sbjct: 207 IDGCVALIDNPAITLPEMMEIIPGPDFPTGAILL-GKAGIQSAYSTGRGSLLMRGKVHTE 265 Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319 + I+VTE+PYQV K+ +IEK+AEL+ KRI + DIRDES + V+ R Sbjct: 266 TIRGDREAIIVTEVPYQVNKATMIEKMAELVRDKRIEGISDIRDESDREGYRVVVELKRD 325 Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379 D+++ ++ + ++T F NM L+ G+ P+ + L +L ++A R +V+ RR+ + Sbjct: 326 ASADVILNQLYRFTPLQTSFGANMVALNGGK-PEQLTLMDMLSAFVAFREDVVNRRTKYL 384 Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR---------------- 420 ++ R +L GL IA NIDE+I +IR P + +++R Sbjct: 385 LRKARERAHVLVGLAIAVANIDEVIKLIRAAPDPATAREQLMTREWDAKDVAPLVRLIDD 444 Query: 421 ----------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQ 470 + L+E Q AIL+LRL+ L L +I EL+ + AE + +L+S + Sbjct: 445 PRHRISDQGTYRLSEAQARAILDLRLQRLTALGRDEIGDELEKIGAEIKDYLEILSSRTR 504 Query: 471 QWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGW 529 I E+ +++ F+ RRT E + A L+ + +I +E + V +S+ G+ Sbjct: 505 VMQIIKDELTAIRDEFATP-----RRTELSEGA----ADLEDEDLIPREDMVVTVSHGGY 555 Query: 530 I--------RSLKSHSVDLSALHFK-EGDSLKIALHAHTTDRILLLSTDG-----KAYTL 575 I RS + S + K + DS+ A+T +L S+ G K + L Sbjct: 556 IKRVPLSVYRSQRRGGKGRSGMSLKNDEDSVTRLFVANTHTPVLFFSSRGIVYKEKVWRL 615 Query: 576 PAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST------CKLLVVSSKGNAFIVEES 629 P L + +G G+A+ L+ L N+ I + + ++ +++G + S Sbjct: 616 P---LTTPQGRGKALVNLLPLEKNERITSILPLPNEEEAAERTNVMFATTRGTVRRNKLS 672 Query: 630 EIIANTRKGKTFLKVSSEE 648 + R GK +K+ E+ Sbjct: 673 DFTNVNRNGKIAMKLDDEQ 691 >gi|186686396|ref|YP_001869592.1| DNA gyrase subunit alpha [Nostoc punctiforme PCC 73102] gi|186468848|gb|ACC84649.1| DNA gyrase, A subunit [Nostoc punctiforme PCC 73102] Length = 827 Score = 394 bits (1012), Expect = e-107, Method: Compositional matrix adjust. Identities = 243/712 (34%), Positives = 402/712 (56%), Gaps = 34/712 (4%) Query: 10 NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69 N L V +L ++ YL YA+S I RA+PD+RDG KPVHRRI++AM E+GL Sbjct: 6 NLLSTGQVIPTALHTEMQRSYLEYAMSVIVGRALPDVRDGLKPVHRRILYAMHELGLVPD 65 Query: 70 AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129 ++K AR+VG+V+GK HPHGDQSVYD+LVRL Q F RYPL++G GNFG++D D AA Sbjct: 66 RPYRKCARVVGDVLGKYHPHGDQSVYDALVRLVQDFSSRYPLLAGHGNFGSVDNDPPAAM 125 Query: 130 RYTEARMTQVA-ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188 RYTE R+ ++ E +L + E+ V+F ++ EP V P++ P LL NG SGIAVGMA Sbjct: 126 RYTETRLAPISHEGMLTEIGEETVEFVGNFDNSQQEPTVLPAQLPFLLLNGCSGIAVGMA 185 Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248 T++P HN+ E+ + +ALIDNP++ EKL + I GPDFPTGG I+ I E+Y +G+G Sbjct: 186 TNVPPHNLGEVVDGLIALIDNPDLPDEKLFQLIPGPDFPTGGEII-GETGIREAYTIGKG 244 Query: 249 GFRVRARWCVEEV--GRGS---WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303 G +R +EE+ RGS I++TE+PYQV K+ IEK+A+L+ R+ + D+RD Sbjct: 245 GILLRGVATLEEIPASRGSKRRTAIIITELPYQVNKAAWIEKVADLVNQGRLQGISDLRD 304 Query: 304 ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363 ES + V+ R +P +++ ++ + ++ F + + G+ P+ + L +L+E Sbjct: 305 ESDREGMRVVIELKRDTNPQEVLQHLYHQTALQMTFGAILLAIVNGQ-PRQLSLRQLLQE 363 Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSR 420 +L+ R E L RR ++ + RV +++GLL A N+D +I I+R K + S+ Sbjct: 364 FLSFREETLNRRYNYELGKAQSRVHLVEGLLKALSNLDRVIEILRQAPDGSTAKINLCSQ 423 Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480 L+E Q DAIL + LR L LE+ ++ E + + + ++ LLN ++ + ++R Sbjct: 424 LDLSEVQGDAILAMPLRRLTSLEQQNLQQEFEQISEQISLLEQLLNDRRELLKALKKDLR 483 Query: 481 EVKEIFS--KSTDLGRRRTTFCE--VSRADKATLQQAMIEKEPITVVISNRGWIRSLKS- 535 +K +S + T +G + + E SRA++ L+ + +E I + + RG++R + Sbjct: 484 SLKRKYSDPRRTKIGEEQKSRAEEQKSRAEEEELKSSEPAEEAI-LEFTQRGYVRRTQPS 542 Query: 536 --HSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593 S + LH + D + + T +L+L+ GK Y + G + G + L Sbjct: 543 GRKSKAENGLH--DNDFIIQTVLTDTQKDLLILTGGGKVYPVNVGEIPPTTGRSPRGKPL 600 Query: 594 IDLNHN------QDIVTAFVYD---STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV 644 I + N + +V+ F+ T ++++++ +G + E TR+G T LK+ Sbjct: 601 ITMLSNTAQGAQEAVVSRFLLPDNLETQQMILLTKQGRIKRLSLGEFTNLTRRGITILKL 660 Query: 645 SSEEKMKLV-VKVTGDHVAVVGENRKLLIFSI--DQIPEMSRGKGVRLQSYK 693 ++++ G+H+ + ++L F+ +Q+P M R + LQ+++ Sbjct: 661 KDDDELSFTQFTKPGEHLILASSGGRVLRFATNDEQLPIMGR-TAMGLQAFR 711 >gi|77362544|emb|CAJ33722.1| DNA gyrase subunit A [Bacillus plakortidis] Length = 470 Score = 394 bits (1012), Expect = e-107, Method: Compositional matrix adjust. Identities = 198/444 (44%), Positives = 305/444 (68%), Gaps = 6/444 (1%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 + N+ +++ ++ ++ YA+S I RA+PD RDG KPVHRRI++AM+++G+ A+K Sbjct: 6 QSNITEINIGQEMQTSFMDYAMSVIVSRALPDARDGLKPVHRRILYAMNDLGMTPDKAYK 65 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSARIVG+VIGK HPHGD +VY+++VR+AQ F RY L+ G GNFG++DGDSAAA RYTE Sbjct: 66 KSARIVGDVIGKYHPHGDSAVYETMVRMAQDFSYRYMLVDGHGNFGSVDGDSAAAMRYTE 125 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 A+M++++ +++ +++D +DF+D Y+ + EPVV P++FPNLL NGTSGIAVGMAT+IP Sbjct: 126 AKMSKISMELVRDINKDTIDFQDNYDGSEQEPVVMPARFPNLLVNGTSGIAVGMATNIPP 185 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 H + E+ + LAL +N EI I +L+EYI GPDFPTG I+ R I +Y+ GRG +R Sbjct: 186 HQLGEVIDGVLALSENREIDIAELMEYIPGPDFPTGAEIL-GRSGIRRAYQTGRGSITLR 244 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313 A+ +E+ G I+VTE+PYQV K+RLIEKIAEL+ K+I + D+RDES ++ Sbjct: 245 AKTEIED-HNGKQRIIVTELPYQVNKARLIEKIAELVRDKKIEGITDLRDESDRTGMRIV 303 Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373 R + ++L+ ++ + +++ F +N+ L GR P+V+ L L+E+L H+ V Sbjct: 304 IEVRRDANANVLLNNLHKQTALQSSFGINLLALVGGR-PKVLNLKECLEEYLDHQIVVTR 362 Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDA 430 RR++F ++ + R IL+GL IA ++DE+I++IR + + ++ RF L+ +Q A Sbjct: 363 RRTAFELKKAEARAHILEGLRIALDHLDEVISLIRASQTTEIARNGLMERFELSYDQSQA 422 Query: 431 ILNLRLRSLRKLEEYQIKSELDNL 454 IL++RL+ L LE +I+ E + L Sbjct: 423 ILDMRLQRLTGLERDKIEGEYNEL 446 >gi|91977067|ref|YP_569726.1| DNA gyrase subunit A [Rhodopseudomonas palustris BisB5] gi|91683523|gb|ABE39825.1| DNA gyrase subunit A [Rhodopseudomonas palustris BisB5] Length = 917 Score = 394 bits (1012), Expect = e-107, Method: Compositional matrix adjust. Identities = 240/631 (38%), Positives = 355/631 (56%), Gaps = 55/631 (8%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 +++ +S+ ++ YL YA+S I RA+PD RDG KPVHRRI+ M E G ++ ++KS Sbjct: 17 DIRPISILDEMKRSYLDYAMSVIVARALPDARDGLKPVHRRILFGMYENGFEWNKPYRKS 76 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 AR VG+VIGK HPHGDQSVYD++VR+AQ F R PLI GQGNFG++DGD+ AA RYTE+R Sbjct: 77 ARTVGDVIGKYHPHGDQSVYDAMVRMAQDFSMRVPLIDGQGNFGSVDGDAPAAMRYTESR 136 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 +T++A+L+L +D+D VD++D Y+ EP V P+KFPNLL NG GIAVGMAT+IP HN Sbjct: 137 LTKIAQLLLDDLDKDTVDYQDNYDGSFREPRVLPAKFPNLLVNGAGGIAVGMATNIPPHN 196 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 + E+ +A +ALI++P + I+ L+ I GPDFPTGGII+ R I +Y GRG +R + Sbjct: 197 LGEVIDACIALIEDPALGIDDLINIIPGPDFPTGGIIL-GRAGIRLAYHTGRGSIVMRGK 255 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315 +E V + I+V+EIPYQV K+ ++E+IAEL+ K+I + D+RDES D V+ Sbjct: 256 VEIETVRKDREAIIVSEIPYQVNKATMVERIAELVREKKIEGISDLRDESDRDGFRVVIE 315 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 R PD+++ ++ + ++T F NM L GR P +M L +L ++A R +V+ RR Sbjct: 316 LRRDAVPDVVLNQLYRFTPLQTNFGANMVALDAGR-PHLMNLRDLLTLFVAFREQVVTRR 374 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK----------------PVMVS 419 + + + R IL GL IA NIDE+I +IRN P M++ Sbjct: 375 TKYLLGKARDRAHILVGLAIAVANIDEMIRVIRNSPDPNTARETLMSRDWPAADVAAMIT 434 Query: 420 -----RFSLTEN--------QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466 R L E+ Q AIL+LRL+ L L +I ELD L E +L Sbjct: 435 LIDDPRHKLNEDGTARLSFEQAKAILDLRLQRLTALGREEISEELDKLALEIADYLDILR 494 Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526 S + + E+ VK F+ R+T E + + +I++E + V +S+ Sbjct: 495 SRARVQTIVKDELIAVKTEFATP-----RKTMIIE---QEGEVEDEDLIQREDMVVTVSH 546 Query: 527 RGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---- 574 G++ R+ + S + +E D + A T +L S+ G+ Y Sbjct: 547 AGYVKRVPLSTYRAQRRGGKGRSGMATREEDFVSRLFVASTHTPVLFFSSRGQVYKEKVW 606 Query: 575 -LPAGNLLSGRGHGEAIQLLIDLNHNQDIVT 604 LP + G G+A+ ++ L + I T Sbjct: 607 RLP---IAPPNGRGKALINILPLEQGERITT 634 >gi|239814627|ref|YP_002943537.1| DNA gyrase subunit A [Variovorax paradoxus S110] gi|239801204|gb|ACS18271.1| DNA gyrase, A subunit [Variovorax paradoxus S110] Length = 881 Score = 394 bits (1011), Expect = e-107, Method: Compositional matrix adjust. Identities = 237/619 (38%), Positives = 352/619 (56%), Gaps = 65/619 (10%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 +SL + YL YA+S I RA+PD RDG KPVHRR+++AM E+ D+ A+KKSARIV Sbjct: 11 ISLEEEMRSSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMHELNNDWNRAYKKSARIV 70 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGDQSVYD++VRLAQ F R+ L+ GQGNFG++DGD+AAA RYTE R+ ++ Sbjct: 71 GDVIGKYHPHGDQSVYDTIVRLAQDFSMRHMLVDGQGNFGSVDGDNAAAMRYTEIRLAKI 130 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A +L +D++ VDF+D Y+ + EP V PSK PNLL NG+ GIAVGMAT+IP HN+ E+ Sbjct: 131 AHEMLADIDKETVDFQDNYDGSEKEPKVLPSKLPNLLVNGSGGIAVGMATNIPPHNLNEV 190 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 +A L L+ NP+ +I++L+E + PDFPT GII + + YR GRG +RA+ E Sbjct: 191 VDACLHLLRNPQATIDELMEIVPAPDFPTAGIIY-GINGVRDGYRTGRGKVVMRAKCHFE 249 Query: 260 EVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318 ++ RG I+V E+PYQV K L E++AEL+ K+I + I+DES + ++ R Sbjct: 250 DIDRGQRQAIIVDELPYQVNKKTLQERMAELVHEKKIEGISHIQDESDKSGMRLVIELKR 309 Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378 P++++ +++ + ++ F +NM L G+ P++ L +++ +L HRREV+ RR+ F Sbjct: 310 GEVPEVVLNNLYKQTQLQDTFGINMVALVDGQ-PKLCNLKDLIEVFLQHRREVVTRRTVF 368 Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIR------------------------------ 408 ++ R +L+GL +A NIDE I IIR Sbjct: 369 TLRKARERGHVLEGLAVALANIDEFIRIIRESPTPPVAKAELMTRSWDSKLVREMLTRSR 428 Query: 409 ------NEDKPKPVMVSR---------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453 N D +P + R + L+E Q IL +RL+ L LE+ +I +E Sbjct: 429 ADGGVVNADDYRPEGLEREFGMGSDGLYRLSETQAQEILQMRLQRLTGLEQDKIVAEYKE 488 Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513 ++AE + + +L ++ I E+ +K+ F +S LG RR + E S D +T + Sbjct: 489 VMAEIDDLLDILAKPERVSVIIGEELGTIKQEFGQSK-LGARR-SLVEHSAYDLST--ED 544 Query: 514 MIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565 +I + V +S+ G+I R+ K A KE D + A+T D IL Sbjct: 545 LITPTDMVVTLSHSGYIKSQPLNEYRAQKRGGRGKQATVTKEDDWIDQLFIANTHDYILC 604 Query: 566 LSTDGKAYTL-----PAGN 579 S G+ Y L PAG+ Sbjct: 605 FSNRGRLYWLKVWEVPAGS 623 >gi|322379610|ref|ZP_08053947.1| DNA gyrase subunit A [Helicobacter suis HS1] gi|322379629|ref|ZP_08053953.1| DNA gyrase subunit A [Helicobacter suis HS5] gi|321147945|gb|EFX42521.1| DNA gyrase subunit A [Helicobacter suis HS5] gi|321148004|gb|EFX42567.1| DNA gyrase subunit A [Helicobacter suis HS1] Length = 826 Score = 394 bits (1011), Expect = e-107, Method: Compositional matrix adjust. Identities = 268/771 (34%), Positives = 428/771 (55%), Gaps = 55/771 (7%) Query: 13 VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72 V VK + + +L+ YL Y++S I RA+PD RDG KPVHRRI++AM E+GL + Sbjct: 20 VAMEVKEIVIEESLKASYLDYSMSVIVGRALPDARDGLKPVHRRILYAMHELGLGARVPY 79 Query: 73 KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132 KKSARIVG+VIGK HPHGD +VY++LVR+AQ F R PL+ GQGNFG+IDGD+AAA RYT Sbjct: 80 KKSARIVGDVIGKYHPHGDSAVYEALVRMAQDFSMRLPLVDGQGNFGSIDGDNAAAMRYT 139 Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192 EARM +E +L+ +D+D VDF D Y+ EP V PS+ PNLL NG+SGIAVGMATSIP Sbjct: 140 EARMATPSEELLRDIDKDTVDFNDNYDNTLKEPDVLPSRLPNLLINGSSGIAVGMATSIP 199 Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252 H + EI EA + +++NP+ S+ +L+ + GPDFPTGGII ++ I+E+Y GRG RV Sbjct: 200 PHRLDEIIEALIFVLENPQASLSDILDLVPGPDFPTGGII-HGKQGILEAYSSGRGRIRV 258 Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRI 311 RA+ +E + G I++ E+PYQ K++L+E+I+EL K + + ++RDES E +R+ Sbjct: 259 RAKTRLERI-EGRESIIIEEVPYQTNKAKLVEQISELARDKIVEGISEVRDESDREGIRV 317 Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371 V+ K R + +++ ++ S ME+ F + + + + P++ L +LK +L HR+ + Sbjct: 318 VIDLK-REANAQIVLNQLYKSSGMESTFSIILLAIH-NKEPRIFNLLELLKLFLMHRKTI 375 Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQV 428 + RR+ + ++ R+ IL+GLL+A N + +I +I+ + + ++ L++ Q Sbjct: 376 VIRRTIYELEKAKARIHILEGLLVALKNSEAVIDLIKKSSDTHSAQEALIQAHQLSQEQS 435 Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488 AIL +RL+ L LE+ +I E L A +++ ++L + + I E+ E+KE FS Sbjct: 436 KAILEMRLQRLTGLEQEKISKEHAELQAIIQELQAILEHADKLNHLIKEELLEIKEKFST 495 Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSVDL 540 + R+T ++ +A + +I +E + V +S+RG+ + + K Sbjct: 496 A-----RKT---QIEEDYEALSDEDLIAREDMVVTLSHRGYAKRMPLKIYEQQKRGGKGK 547 Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNH 598 + + E D ++ A+T D IL ++ G+ Y L + + G+A+ LID+ Sbjct: 548 ISGNTHEDDFIEFFFSANTHDIILFITDKGQLYWLKVYKIPEMGRNAIGKALVNLIDIEP 607 Query: 599 NQDIVTAFVYD--STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV 656 + I S K LV +K +++ +++ A R + +E LV Sbjct: 608 GEKICAILSTPDFSPDKFLVFFTKKG--MIKRTQLSAFGRVRIGVRSIELKEGDALVTAQ 665 Query: 657 TGDHVAVVGENRKLLI---------FSIDQIPEMSRGK----GVRLQSYKDGGISDVICF 703 +H EN++L + F + +M R G+RL+ D I I Sbjct: 666 ILEH-----ENQELFMATAKGMCIRFKASGVRDMGRTAMGVIGMRLKE-GDFVIGASIAL 719 Query: 704 KICEGLTWIDSAGRSYNRSENDLLGW--LGKRGGVGSLVPKGFPRSGKFLS 752 L I S G + L+G L RGG+G + K P++G ++ Sbjct: 720 SDQHKLLTISSKG----MGKQTLIGAYRLQNRGGLGVIGAKLTPKTGNLVA 766 >gi|295094328|emb|CBK83419.1| DNA gyrase subunit A [Coprococcus sp. ART55/1] Length = 852 Score = 394 bits (1011), Expect = e-107, Method: Compositional matrix adjust. Identities = 231/640 (36%), Positives = 373/640 (58%), Gaps = 35/640 (5%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 V L+ +E Y+ YA+S I RA+PD+RDG KPV RRI+H+M E+ +K ARIV Sbjct: 13 VGLKKTMERSYIDYAMSVIAARALPDVRDGLKPVQRRILHSMIELNNGPDKPHRKCARIV 72 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+ +GK HPHGD S+Y++LV+LAQ + RYPL+ G GNFG++DGD AAA RYTEAR++++ Sbjct: 73 GDTMGKYHPHGDISIYEALVKLAQEWNTRYPLVDGHGNFGSVDGDHAAAMRYTEARLSKI 132 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 + ++ +++D VDF ++ + EPVV PS++PNLL NGTSGIAVGMAT+IP HN++E Sbjct: 133 SMEMMADINKDTVDFTPNFDGTEKEPVVLPSRYPNLLVNGTSGIAVGMATNIPPHNLKET 192 Query: 200 CEAALALIDN-----PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 AA+ +IDN E I+++++ + GPDFPTG I+ R+ I ++YR GRG +VRA Sbjct: 193 INAAIKIIDNRVEEGRETEIDEIMDIVKGPDFPTGAQIL-GRQGINDAYRTGRGKIKVRA 251 Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314 +E + G IVVTE+PY V KS LI+ + +L+ KRI + DIRDES+ + V+ Sbjct: 252 ITEIETMNNGKHRIVVTELPYMVNKSLLIKNMVDLVKNKRIDGITDIRDESSREGMRVVI 311 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 + ++ ++++ +F + ++ F M L G VP+++ + +L +L H+ +V+ R Sbjct: 312 ELRKDVNANVILNQLFKHTQLQDTFGCIMLALVDG-VPKILNIKDMLTYYLKHQEDVVTR 370 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAI 431 R+ + + + R IL+G LIA NIDE+I IIRN + K ++ RF L+E Q AI Sbjct: 371 RTKYDLNKAEERAHILQGYLIALDNIDEVITIIRNSKNVGEAKAKLIERFGLSEAQAGAI 430 Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491 +++RLR+L LE +I++E + L+A+ + +L + I E+ + + + Sbjct: 431 VDMRLRALTGLEREKIENEYNELIAKIAEYKEILADENKLLGVIKTELAAIADKYGDE-- 488 Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD--------LSAL 543 RRT+ S D T + +I++E I + ++ G+I+ + + + + Sbjct: 489 ---RRTSITAYS--DDIT-DEELIKREEIVISMTKLGYIKRMPKDTFKVQNRGGKGIKGM 542 Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEAIQLLIDLNHNQD 601 + + D + +T + I+ + G+ Y + + SGR G AI L+ L + Sbjct: 543 NTIDNDIIDEIFLTNTHNFIMFFTNMGRVYRMKGYEIPESGRNARGVAIVNLLQLLPGEK 602 Query: 602 IVTAFV----YDSTCKLLVVSSKGNAFIVEESEIIANTRK 637 VTA + +D K L++++K + E N RK Sbjct: 603 -VTAIIPIAGFDK--KYLMMATKNGIVKKTKIEAFENIRK 639 >gi|153932201|ref|YP_001382417.1| DNA gyrase subunit A [Clostridium botulinum A str. ATCC 19397] gi|153935617|ref|YP_001385969.1| DNA gyrase subunit A [Clostridium botulinum A str. Hall] gi|152928245|gb|ABS33745.1| DNA gyrase, A subunit [Clostridium botulinum A str. ATCC 19397] gi|152931531|gb|ABS37030.1| DNA gyrase, A subunit [Clostridium botulinum A str. Hall] Length = 841 Score = 394 bits (1011), Expect = e-107, Method: Compositional matrix adjust. Identities = 248/693 (35%), Positives = 404/693 (58%), Gaps = 36/693 (5%) Query: 12 LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71 L E + V + +++ Y+ YA+S I RA+PD+RDG KPVHRRII++M +GL Sbjct: 2 LNEGKILPVDVSKEMKKCYIDYAMSVIAGRALPDVRDGLKPVHRRIIYSMQGLGLAPEKG 61 Query: 72 FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131 ++K ARIVG+V+GK HPHGD +VY++LVR+AQ F RY L+ G GNFG++DGD AAA RY Sbjct: 62 YRKCARIVGDVLGKYHPHGDTAVYEALVRMAQNFSIRYTLVDGHGNFGSVDGDGAAAMRY 121 Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191 TEA+M++++ +++ ++++ VDF ++ E+ EP V PS+FPNLL NG+SGIAVGMAT+I Sbjct: 122 TEAKMSKISMELIKDINKNTVDFIPNFDGEEEEPSVLPSRFPNLLVNGSSGIAVGMATNI 181 Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251 P HN+ E+ + + LI+N +++I L+ I GPDFPT G+IV +R I E+Y GRG Sbjct: 182 PPHNLTEVIDGIIMLIENEDVNILDLMTKIKGPDFPTSGLIVGTR-GIREAYETGRGKVI 240 Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VR 310 +RA+ +EE +G I+VTEIPYQV K+RLIE +A L+ K+I + D+RDES D +R Sbjct: 241 IRAKAEIEE-EKGKNKIIVTEIPYQVNKARLIENMANLVKDKKINGISDLRDESDRDGMR 299 Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370 IV+ K R +P++++ ++ + ++ F + M L + PQ++ L IL ++ ++E Sbjct: 300 IVIELK-RDANPNIVLNQLYKHTKLQDTFGIIMLAL-VNNQPQILNLKEILVNYVEFQKE 357 Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQ 427 V+ RR+ F + R IL+GL IA +IDE+I +IR N + K +++ F+L+E Q Sbjct: 358 VIRRRTRFDLDKALARAHILEGLRIALDHIDEVIKLIRASKNTAEAKEGLMNNFNLSEKQ 417 Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487 AIL+++L+ L LE +I+ E L+ + +L+ + + I E+ E+K + Sbjct: 418 AQAILDMKLQRLTGLEREKIEEEYKELMEKISYFREILDKEELVLSIIKEELIEIKNKY- 476 Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSVD 539 G R T E+ + + + +IE + + + +++ G+I+ L K Sbjct: 477 -----GDERKT--EIVKGEHDIDIEDLIEDKKVIITLTHGGYIKRLDMDTYSSQKRGGKG 529 Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEAIQLLIDLN 597 + A K+ D ++ T IL + GK Y L A + +GR G I +I + Sbjct: 530 IQATSTKQDDFIENMFVTSTHSTILFFTNRGKVYKLKAYEIPEAGRTAKGTNIVNIIPIE 589 Query: 598 HNQDIVTAFVY---DSTCKLLVVSSKGNAFIVEESEI--IANTRKGKTFLKVSSEEKMKL 652 +N+ I T D ++ + G I++++EI ++ RKG E+ + Sbjct: 590 NNEKIQTVIGLKDIDDMKHFVMCTRNG---IIKKTEIKKYSSIRKGGLNAINLREDDELI 646 Query: 653 VVKVT--GDHVAVVGENRKLLIFSIDQIPEMSR 683 VK+T + + +V +N + F+ + + M R Sbjct: 647 DVKMTKGNNEIIIVTQNGYCIRFNEEDVRPMGR 679 >gi|148378018|ref|YP_001252559.1| DNA gyrase, A subunit [Clostridium botulinum A str. ATCC 3502] gi|148287502|emb|CAL81561.1| DNA gyrase subunit A [Clostridium botulinum A str. ATCC 3502] Length = 836 Score = 394 bits (1011), Expect = e-107, Method: Compositional matrix adjust. Identities = 248/693 (35%), Positives = 404/693 (58%), Gaps = 36/693 (5%) Query: 12 LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71 L E + V + +++ Y+ YA+S I RA+PD+RDG KPVHRRII++M +GL Sbjct: 2 LNEGKILPVDVSKEMKKCYIDYAMSVIAGRALPDVRDGLKPVHRRIIYSMQGLGLAPEKG 61 Query: 72 FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131 ++K ARIVG+V+GK HPHGD +VY++LVR+AQ F RY L+ G GNFG++DGD AAA RY Sbjct: 62 YRKCARIVGDVLGKYHPHGDTAVYEALVRMAQNFSIRYTLVDGHGNFGSVDGDGAAAMRY 121 Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191 TEA+M++++ +++ ++++ VDF ++ E+ EP V PS+FPNLL NG+SGIAVGMAT+I Sbjct: 122 TEAKMSKISMELIKDINKNTVDFIPNFDGEEEEPSVLPSRFPNLLVNGSSGIAVGMATNI 181 Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251 P HN+ E+ + + LI+N +++I L+ I GPDFPT G+IV +R I E+Y GRG Sbjct: 182 PPHNLTEVIDGIIMLIENEDVNILDLMTKIKGPDFPTSGLIVGTR-GIREAYETGRGKVI 240 Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VR 310 +RA+ +EE +G I+VTEIPYQV K+RLIE +A L+ K+I + D+RDES D +R Sbjct: 241 IRAKAEIEE-EKGKNKIIVTEIPYQVNKARLIENMANLVKDKKINGISDLRDESDRDGMR 299 Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370 IV+ K R +P++++ ++ + ++ F + M L + PQ++ L IL ++ ++E Sbjct: 300 IVIELK-RDANPNIVLNQLYKHTKLQDTFGIIMLAL-VNNQPQILNLKEILVNYVEFQKE 357 Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQ 427 V+ RR+ F + R IL+GL IA +IDE+I +IR N + K +++ F+L+E Q Sbjct: 358 VIRRRTRFDLDKALARAHILEGLRIALDHIDEVIKLIRASKNTAEAKEGLMNNFNLSEKQ 417 Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487 AIL+++L+ L LE +I+ E L+ + +L+ + + I E+ E+K + Sbjct: 418 AQAILDMKLQRLTGLEREKIEEEYKELMEKISYFREILDKEELVLSIIKEELIEIKNKY- 476 Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSVD 539 G R T E+ + + + +IE + + + +++ G+I+ L K Sbjct: 477 -----GDERKT--EIVKGEHDIDIEDLIEDKKVIITLTHGGYIKRLDMDTYSSQKRGGKG 529 Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEAIQLLIDLN 597 + A K+ D ++ T IL + GK Y L A + +GR G I +I + Sbjct: 530 IQATSTKQDDFIENMFVTSTHSTILFFTNRGKVYKLKAYEIPEAGRTAKGTNIVNIIPIE 589 Query: 598 HNQDIVTAFVY---DSTCKLLVVSSKGNAFIVEESEI--IANTRKGKTFLKVSSEEKMKL 652 +N+ I T D ++ + G I++++EI ++ RKG E+ + Sbjct: 590 NNEKIQTVIGLKDIDDMKHFVMCTRNG---IIKKTEIKKYSSIRKGGLNAINLREDDELI 646 Query: 653 VVKVT--GDHVAVVGENRKLLIFSIDQIPEMSR 683 VK+T + + +V +N + F+ + + M R Sbjct: 647 DVKMTKGNNEIIIVTQNGYCIRFNEEDVRPMGR 679 >gi|26553456|ref|NP_757390.1| DNA gyrase subunit A [Mycoplasma penetrans HF-2] gi|26453462|dbj|BAC43794.1| DNA gyrase subunit A [Mycoplasma penetrans HF-2] Length = 837 Score = 394 bits (1011), Expect = e-107, Method: Compositional matrix adjust. Identities = 222/619 (35%), Positives = 365/619 (58%), Gaps = 40/619 (6%) Query: 26 LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85 +E ++ YA+S I RAIPD+RDGFKPVHRR+++A MG+ +KKSAR+VGEVIGK Sbjct: 28 VENSFMDYAMSVIVSRAIPDVRDGFKPVHRRVLYAAYNMGMTHDKPYKKSARLVGEVIGK 87 Query: 86 LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145 HPHGD + Y+++VR+AQ F RY L+ G GNFG+IDGDSAAA RYTEAR+++++ +L+ Sbjct: 88 YHPHGDTAAYETMVRMAQDFSMRYMLVDGHGNFGSIDGDSAAAMRYTEARLSKISSEMLK 147 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 ++++ VDF + Y+ + EP V P+ FPN+LANG+SGIAVGMAT+IP HN+ EI +A L Sbjct: 148 NIEKETVDFSENYDGSEMEPTVLPALFPNMLANGSSGIAVGMATNIPPHNLSEIIDAVLL 207 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265 L N + S+ ++ + + GPDFPT IV + + I + GRG +R++ + Sbjct: 208 LTKNKDASVNEIKQVLKGPDFPTKAEIVGT-DGINSYFETGRGSITIRSKAEIIHSRDSK 266 Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLFPKNRSLDPDL 324 I++ EIPY V KS LI+KI +L+ + I + D+RDES+ E +RIV+ K ++ P++ Sbjct: 267 SQIIIKEIPYMVNKSNLIDKIVDLVKTEAIEGIADLRDESSREGIRIVIEVKKDTV-PEV 325 Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384 L+ +F ++ +++ F +NM L + + P+++ + +L+E+L H+ VL R++ F ++ + Sbjct: 326 LLNKLFKMTPLQSNFSVNMLAL-VDKEPKLLNIKEVLQEYLKHQVNVLVRKTKFELKKAE 384 Query: 385 RRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAILNLRLRSLRK 441 R IL+GL IA NID +I IIR + D+ + +++++ LT+ Q AIL++RLRSL Sbjct: 385 EREHILEGLFIAVTNIDAVIKIIRESKDNDEAEKQLITKYKLTKIQAKAILDMRLRSLSN 444 Query: 442 LEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCE 501 LE +I+ EL + A +++ +L S +Q + I+ E+ +K + R+ Sbjct: 445 LERLKIEQELKEVKALIQELSGILKSSDKQMDIISKELINLKNTYGDE----RKTEILYG 500 Query: 502 VSRADKATLQQAMIEKE---PITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAH 558 VS A I+ E P+ ++ +R LK S++ + + G +K + + Sbjct: 501 VS---------ASIDDEDLIPVENIVISRSANNYLKRISIETYKIQRRGGVGVK-GVSTY 550 Query: 559 TTDRI------------LLLSTDGKAYTLPAGNLLSGRGHGEAIQL--LIDLNHNQDIVT 604 D + L + GK Y + A + G + + L+++ N+ I+ Sbjct: 551 NDDEVDDIITTTTHTDILFFTDFGKVYRIRAHEIPPGSRQSKGVPALNLMNIEKNEKILV 610 Query: 605 AFVYDSTCK--LLVVSSKG 621 + K L + ++KG Sbjct: 611 MLPVEDYSKGFLFLATTKG 629 >gi|162446894|ref|YP_001620026.1| DNA gyrase subunit A [Acholeplasma laidlawii PG-8A] gi|161985001|gb|ABX80650.1| DNA gyrase, subunit A [Acholeplasma laidlawii PG-8A] Length = 867 Score = 394 bits (1011), Expect = e-107, Method: Compositional matrix adjust. Identities = 238/727 (32%), Positives = 402/727 (55%), Gaps = 39/727 (5%) Query: 6 ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65 +S + + + +K V++ ++ +L YA+S I RA+P+ +DG KPV RRI++ M E Sbjct: 1 MSENTDKLHDKIKEVNITSEMKTSFLNYAMSVIVSRALPNAKDGLKPVQRRILYGMHENN 60 Query: 66 LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125 + A KKSARIVG+V+GK HPHGD S+YD++VR+AQPF R PL+ G GNFG++DGD Sbjct: 61 MYANTAHKKSARIVGDVMGKYHPHGDSSIYDAMVRMAQPFSYRKPLVDGHGNFGSVDGDG 120 Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185 AAA RYTEAR++++A +++ +D++ V+F D Y+ + EP V PS++PNLL NG++GIAV Sbjct: 121 AAAMRYTEARLSKIAGEMVRDIDKNTVNFVDNYDGSEREPQVLPSRYPNLLVNGSTGIAV 180 Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245 GMAT+IP HN+ E+ +A A +DNP+I++ +L++YI GPDFPTGG I+ + ++Y Sbjct: 181 GMATNIPPHNLGEVIDAIFAYLDNPDITVLELMQYIKGPDFPTGGQIL-GITGLRQAYET 239 Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305 G+G VRA+ + E + +++TEIPYQV K+ LIE+IAE++ K I + D+RDES Sbjct: 240 GKGIIAVRAQHEIVET-KNRTELIITEIPYQVNKTTLIERIAEVVKNKIIEGISDLRDES 298 Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365 ++ + +P + + +++ + ++T F +NM L G+ P+++ L L ++ Sbjct: 299 NRKGMRIVIELRKDTNPSVTLNNLYKHTQLQTSFGINMIALVDGQ-PRLLSLKDALTHYI 357 Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFS 422 AH+ E++ RR+ F ++ + R+ IL+ L+ A ++D +I II++ P+ +++ + Sbjct: 358 AHQIEIITRRTQFDLEKAEARMHILEALVKALNDVDNVIKIIKDAKNPEDARNNLIATYD 417 Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482 TE Q +IL ++L+ L LE +I E DNL + + +L + I E++E+ Sbjct: 418 FTEIQARSILTMQLQRLTGLEIDKIHEEADNLAHKITEYKQILGDEDLKIEIIKSELQEI 477 Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATL-QQAMIEKEPITVVISNRGWIRSL-------- 533 K+ + EV+ + + + +I E I V ++N G+I+ + Sbjct: 478 KDKYDDP--------RMSEVNLYEDLDIDNEDLIPVEDIVVTVTNNGYIKRMNLDEYKLQ 529 Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593 V +S + + D ++ T D L + G+ + L L SG + + ++ Sbjct: 530 NRGGVGMSGVKLHDDDFVEHIAMTSTHDFHLFFTNLGRVFKLKGYTLPSGSRQSKGVPIV 589 Query: 594 IDLNHN-----QDIVTAFVYDSTCK-LLVVSSKGNAFIVEESEI--IANTRKGKTFLKVS 645 LN T +D+ L V+ +G IV+ + I N R+ Sbjct: 590 NYLNFQPGEKLASFTTIKDFDAEDHYLFFVTKRG---IVKRTHINNYKNIRQNGIIAISL 646 Query: 646 SEEKMKLVVKVTGDHVAVV--GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVIC 702 E+ LV K T H ++ N K + F I E+ R GVR D +++ Sbjct: 647 REDDELLVTKSTNGHKHILLGASNGKAIHFLETDIREIGRTATGVRGMDIPDD--EEIVG 704 Query: 703 FKICEGL 709 F + +G+ Sbjct: 705 FAVVDGI 711 >gi|17227937|ref|NP_484485.1| DNA topoisomerase chain A [Nostoc sp. PCC 7120] gi|17129786|dbj|BAB72399.1| DNA topoisomerase chain A [Nostoc sp. PCC 7120] Length = 835 Score = 394 bits (1011), Expect = e-107, Method: Compositional matrix adjust. Identities = 256/721 (35%), Positives = 398/721 (55%), Gaps = 43/721 (5%) Query: 10 NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69 N L V +L ++ YL YA+S I RA+PD+RDG KPVHRRI++AM E+GL Sbjct: 6 NLLSTGQVITTALHTEMQRSYLEYAMSVIVGRALPDVRDGLKPVHRRILYAMHELGLTPD 65 Query: 70 AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129 ++K AR+VG+V+GK HPHGDQ+VYD+LVRL Q F RYPL+ G GNFG++D D AA Sbjct: 66 RPYRKCARVVGDVLGKYHPHGDQAVYDALVRLVQDFSSRYPLLGGHGNFGSVDNDPPAAM 125 Query: 130 RYTEARMTQVA-ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188 RYTE R+ ++ E +L + E+ V+F ++ EP V P++ P LL NG SGIAVGMA Sbjct: 126 RYTETRLAPISHEGMLTEIGEETVEFVGNFDNSQQEPTVLPAQLPFLLLNGCSGIAVGMA 185 Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248 T+IP HN+ EI + +ALID P+++ EKLLE I GPDFPTGG IV I E+Y G+G Sbjct: 186 TNIPPHNLGEIVDGLIALIDQPDLADEKLLELIPGPDFPTGGEIV-GEAGIREAYITGKG 244 Query: 249 GFRVRARWCVEEV--GRGS---WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303 +R VEEV GRGS I+VTE+PYQV K+ IEK+AEL+ R+ + D+RD Sbjct: 245 SIVLRGVATVEEVPGGRGSKRRMAIIVTELPYQVNKAGWIEKVAELVNQGRLQGISDLRD 304 Query: 304 ES-AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362 ES E +R+V+ K R +P +++ ++ + ++T F + + G+ P+ + L +L+ Sbjct: 305 ESDREGMRVVIELK-RDTNPQEVLQHLYHQTALQTNFGAILLAIVEGQ-PRQLSLRQLLQ 362 Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVS 419 E+L R L RR S+ + R+ ++GLL A +DE+I I+R K + S Sbjct: 363 EFLNFRENTLNRRYSYELGKAASRLNTVEGLLKALSKLDEVIGILRQAPDGSTAKVTLCS 422 Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479 R L+E+Q DAIL++ LR L LE+ ++ E L + +D LL+ K+ + ++ Sbjct: 423 RLDLSEDQADAILSMPLRRLTSLEQQNLQREFGELSEQITLLDRLLSDRKELLKALKKDL 482 Query: 480 REVKEIFS--KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPIT-------------VVI 524 R +K + + T LG + + E+ + KA Q + + + T + I Sbjct: 483 RSLKRKYGDPRRTKLGAK--SLEELPKNKKADKQNSSAKTDEDTENLSPLEPAEEAILEI 540 Query: 525 SNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL---- 580 ++RG++R ++ E D + T +L+L+ GK Y + G++ Sbjct: 541 THRGYLRRIQPGKKSKVENGLLEHDFIIQTNITDTHKELLILTNGGKLYPVKVGDIPPTT 600 Query: 581 -LSGRGHGEAIQLLIDLNHNQDIVTAFVY----DSTCKLLVVSSKGNAFIVEESEIIANT 635 S RG L NQ+ V + + + +L++++ +G + E+ T Sbjct: 601 GRSPRGTPLITMLTSTAQGNQEPVVSRLLLPENLAAQQLILLTKQGRIKRLSLEELTNLT 660 Query: 636 RKGKTFLKVSSEEKMKLV-VKVTGDHVAVVGENRKLLIFSID--QIPEMSRGKGVRLQSY 692 R+G T LK+ ++++ L G + + +LL FS + Q+P M R + LQ++ Sbjct: 661 RRGVTILKLKDDDELLLTQFSKPGQQLILASSGGRLLRFSTNDEQLPIMGR-TAMGLQAF 719 Query: 693 K 693 + Sbjct: 720 R 720 >gi|253568271|ref|ZP_04845682.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] gi|251842344|gb|EES70424.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] Length = 731 Score = 394 bits (1011), Expect = e-107, Method: Compositional matrix adjust. Identities = 240/663 (36%), Positives = 378/663 (57%), Gaps = 38/663 (5%) Query: 12 LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71 L ++ + +++ ++ Y+ Y++S I RA+PD+RDGFKPVHRRI++ M E+G Sbjct: 2 LEQDRIIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILYGMMELGNTSDKP 61 Query: 72 FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131 +KKSARIVGEV+GK HPHGD SVY ++VR+AQ + RYPL+ GQGNFG++DGDS AA RY Sbjct: 62 YKKSARIVGEVLGKYHPHGDSSVYYAMVRMAQEWAMRYPLVDGQGNFGSVDGDSPAAMRY 121 Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191 TEAR+ ++ E ++ + ++ VDF ++ +EP V P++ PNLL NG SGIAVGMAT++ Sbjct: 122 TEARLNKLGEAMMDDLYKETVDFEPNFDNTLTEPKVMPTRIPNLLVNGASGIAVGMATNM 181 Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251 P HN+ E+ +A A IDN EI++E+L+ Y+ PDFPTGG I + E Y GRG Sbjct: 182 PPHNLSEVIDACEAYIDNQEITVEELMTYVKAPDFPTGGYIY-GISGVREGYLTGRGRVV 240 Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VR 310 +RA+ + E G+ IVVTEIPY V K+ LI+ IA+L+ KRI + + DES D +R Sbjct: 241 MRAKAEI-ETGQTHDKIVVTEIPYNVNKAELIKYIADLVNDKRIEGISNANDESDRDGMR 299 Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370 IV+ K R + +++ ++ ++ ++T F +N L GR P+ + L ++K ++ HR E Sbjct: 300 IVIDVK-RDANASVVLNKLYKMTALQTSFGVNNVALVHGR-PKTLNLRDMIKYFVEHRHE 357 Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQ 427 V+ RR+ F ++ R IL+GL+IA NIDE+I IIR P ++ RF+LTE Q Sbjct: 358 VVIRRTQFDLRKAKERAHILEGLIIASDNIDEVIRIIRAAKTPNDAIAGLIERFNLTEIQ 417 Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487 AI+ +RLR L L + Q+ +E + ++ + ++S+L + + E+ EVK + Sbjct: 418 SRAIVEMRLRQLTGLMQDQLHAEYEEIMKQIAYLESILADDEVCRKVMKDELLEVKAKYG 477 Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVD 539 RR+ E+ + + + + + + IS+ G+I R+ V Sbjct: 478 DE-----RRS---EIVYSSEEFNPEDFYADDQMIITISHMGYIKRTPLTEFRAQNRGGVG 529 Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLN 597 ++ D ++ A + ++ + GK Y L + G G AIQ L++++ Sbjct: 530 SKGTETRDADFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTKNSKGRAIQNLLNID 589 Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG---KTFLKVSSEEKMKLVV 654 + D VTA+ L V S + + ++ T+KG KT L+ S + V Sbjct: 590 SD-DSVTAY--------LRVKSLDDTEYINSHYVLFCTKKGVIKKTLLEQYSRPRQNGVN 640 Query: 655 KVT 657 +T Sbjct: 641 AIT 643 >gi|39938985|ref|NP_950751.1| DNA gyrase alpha subunit [Onion yellows phytoplasma OY-M] gi|39722094|dbj|BAD04584.1| DNA gyrase alpha subunit [Onion yellows phytoplasma OY-M] Length = 835 Score = 394 bits (1011), Expect = e-107, Method: Compositional matrix adjust. Identities = 235/703 (33%), Positives = 404/703 (57%), Gaps = 42/703 (5%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 N++ V+L +++ +L+YA+S I RA+PD++DG KPV RRI+++M E+G+ A++KK+ Sbjct: 21 NIQEVNLSKEMKKSFLSYAMSVIVSRALPDIKDGLKPVQRRILYSMKELGVYSHASYKKA 80 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 AR+VG+V+GK HPHGD S+Y+++VR+AQ F RYPL+ G GNFG+IDGD AAA RYTE + Sbjct: 81 ARVVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGHGNFGSIDGDKAAAMRYTEVK 140 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 M ++A +++ +D+D +DF D Y+ + EP+V P+ PNLL NG +GIAVGMAT IP+HN Sbjct: 141 MAKMAMELIKNIDKDTIDFVDNYDGTEKEPLVLPTALPNLLINGATGIAVGMATKIPTHN 200 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 + E+ + + I+N +ISI++L+++I GPDFPTGG ++ +S+ +Y G+G ++A+ Sbjct: 201 LGEVIDGLINYINNKDISIDELMQHIKGPDFPTGGELL-GLQSLKSAYHTGQGAVILKAK 259 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315 V + RG I+VTEIPYQV+K+ LIEKIA L+ K + + D+RDES+ ++ Sbjct: 260 SHVSK-ERGKTSIIVTEIPYQVKKTDLIEKIAFLVKNKIVEEITDLRDESSRKGMKIVIE 318 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 R + +++ ++ S + F +NM L +G+ PQ++ L IL+ + R EV+ R+ Sbjct: 319 LKRDANSKIILNKLYKHSQLRISFGINMVAL-VGKTPQLVSLKQILEAFFNFRIEVINRQ 377 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVDAIL 432 SF ++ R ++ L+ +I+ I +I+ K ++ R++ E Q AIL Sbjct: 378 KSFELKKASARKHLVTALITILEDIETAIKLIKTSTDVKEAQSKLMQRYNFDEIQSKAIL 437 Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492 + L+ L E ++ +E NL E + S+++S K++ + E+ E+K+ + Sbjct: 438 EMSLQRLANQETQKLITEEKNLTQEILECQSIIDSQKKKERILEKELLEMKKKYQDD--- 494 Query: 493 GRRRTTF---CEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSVDLS 541 R+TT ++ D + +IE++PI + I+N+G+I+S+ K +S Sbjct: 495 --RKTTLNFDAPLNFED-----EDLIEEKPIIITITNKGYIKSMDIDTYKQQKRGGQGVS 547 Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD 601 + E D ++ T D L + GK Y L + G+ + L+ L +D Sbjct: 548 GMKIYEEDFIEHLAITSTHDYHLFFTNKGKVYQLKGYEIPLGQRQSKGSHLVNFLPFEKD 607 Query: 602 -IVTAFV----YDSTCKLLVVSSKGNAFIVEES---EIIANTRKGKTFLKVSSEEKMKLV 653 +T+F +D + L ++K IV+++ E +++G +++ +++ V Sbjct: 608 EFLTSFTSVKNFDQSQDYLFFATKKG--IVKKTPLKEYSHISKRGLIAIRLKENDEVLTV 665 Query: 654 VKVTG-DHVAVVGENRKLLIFSIDQIPEMSRGK----GVRLQS 691 K TG ++ + N + F +I +SR G+RL S Sbjct: 666 NKTTGTKNIILASNNGNAICFCETKIKSISRNSMGVIGMRLGS 708 >gi|332534567|ref|ZP_08410402.1| DNA gyrase subunit A [Pseudoalteromonas haloplanktis ANT/505] gi|332035987|gb|EGI72466.1| DNA gyrase subunit A [Pseudoalteromonas haloplanktis ANT/505] Length = 899 Score = 394 bits (1011), Expect = e-107, Method: Compositional matrix adjust. Identities = 245/636 (38%), Positives = 366/636 (57%), Gaps = 67/636 (10%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 V++ L+ YL YA+S I RA+PD+RDG KPVHRR++ AM+E+ D+ +KKSAR+V Sbjct: 11 VNIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELSNDWNKPYKKSARVV 70 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG++DGDSAAA RYTE RM ++ Sbjct: 71 GDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEVRMAKM 130 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 + +L ++++ VDF Y+ + P V P+K PNLL NG+SGIAVGMAT+IP HN+ E+ Sbjct: 131 SHELLADLEKETVDFVPNYDGTEFIPDVLPTKVPNLLVNGSSGIAVGMATNIPPHNLTEV 190 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 LALI NP+++I +L++YI GPDFPT II ++ I ++Y GRG +RAR +E Sbjct: 191 VNGCLALIQNPDLTILELMDYIPGPDFPTAAII-NGKKGIEQAYLTGRGKVYMRARADIE 249 Query: 260 -EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKN 317 + G I+V EIPYQV K+RLIEKIAEL+ K+I + +RDES +D +RIV+ K Sbjct: 250 TDEKTGRETIIVHEIPYQVNKARLIEKIAELVKDKKIEGISALRDESDKDGMRIVIEIKR 309 Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377 + ++++ +++ + ++T F +NM L + P+ L +L+E++ HRREV+ RR+ Sbjct: 310 GDVG-EVILNNLYSQTQLQTVFGMNMVAL-INNQPKCFNLKEMLEEFIIHRREVVTRRTV 367 Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS------------------ 419 F ++ R L+GL IA NID II +IR P ++ Sbjct: 368 FDLRKARDRAHTLEGLAIALANIDPIIELIRKSPTPAEAKIALTARPWELGNVQGMLEKA 427 Query: 420 --------------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKE 459 ++ ++E Q AIL+LRL L LE +I +E LL Sbjct: 428 GEDNVARPDWLASELGIRDGQYYISEQQAQAILDLRLHKLTGLEHEKILTEYQALLELIA 487 Query: 460 KIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEP 519 ++ +L + ++ I E+ E+KE + RRT E++ A + +I +E Sbjct: 488 ELLYILATPERLMEVIRDELVEIKEQYGDE-----RRT---EINAAAHDISLEDLITEEN 539 Query: 520 ITVVISNRGWIR--SLKSHSVDL------SALHFKEGDSLKIALHAHTTDRILLLSTDG- 570 + V +S+ G+++ +L + SA K+ D ++ L A+T D IL ST G Sbjct: 540 VVVTLSHEGYVKYQALSDYEAQRRGGKGKSATKMKDEDFIERLLVANTHDTILCFSTAGR 599 Query: 571 ----KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602 K Y LP L S G+ I L+ L ++ I Sbjct: 600 LYWLKVYQLP---LASRAARGKPIVNLLPLEADERI 632 >gi|156888529|gb|ABU96669.1| DNA gyrase subunit A [Streptococcus dysgalactiae subsp. equisimilis] gi|156888531|gb|ABU96670.1| DNA gyrase subunit A [Streptococcus dysgalactiae subsp. equisimilis] Length = 834 Score = 394 bits (1011), Expect = e-107, Method: Compositional matrix adjust. Identities = 224/580 (38%), Positives = 354/580 (61%), Gaps = 26/580 (4%) Query: 12 LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71 + + N+ V+L ++ ++ YA+S I RA+PD+RDG KPVHRRI++ M+E+G+ Sbjct: 1 MQDRNLIDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVMPDKP 60 Query: 72 FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131 KKSARI G+V+GK HPHGD S+Y ++V +AQ + R+ L+ G GNFG++DGD AAA RY Sbjct: 61 HKKSARITGDVMGKYHPHGDSSIYGAMVCMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRY 120 Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191 TEARM+++A +L+ ++++ VDF+D Y+ + EP+V P++FPNLL NG +GIAVGMAT+I Sbjct: 121 TEARMSKIALELLRDINKNTVDFQDNYDGSEREPLVLPARFPNLLVNGATGIAVGMATNI 180 Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251 P HN+ E +A +++NP+ + L+E I GPDFPTG +++ R I +Y G+G Sbjct: 181 PPHNLAESIDAVKMVMENPDCTTRDLMEVIPGPDFPTGALVM-GRSGIHRAYDTGKGSIV 239 Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVR 310 +R+R +E G IVVTE PY V K+++ E I L KRI + +RDES+ E VR Sbjct: 240 LRSRTEIETTKTGRERIVVTEFPYGVNKTKVHEHIVRLAQEKRIEGITAVRDESSREGVR 299 Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370 V+ + R ++++ ++F L+ ++T F NM + G VP+++ L I+ +++H++E Sbjct: 300 FVIEIR-RDASANVILNNLFKLTSLQTNFSFNMLAIENG-VPKILSLRQIIDNYISHQKE 357 Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQ 427 V+ RR+ F + R IL+GLLIA ++DE+IAIIRN + + ++SRF+L+E Q Sbjct: 358 VITRRTQFDKNKAEARAHILEGLLIALDHLDEVIAIIRNSETDVIAQAELMSRFNLSERQ 417 Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487 AIL++RLR L LE +I+SE D LLA + +L ++ I E+ E+K ++ Sbjct: 418 SQAILDMRLRRLTGLERDKIQSEYDELLALIADLADILAKPERVVTIIKEEMDEIKRKYA 477 Query: 488 KSTDLGRRRTTFC--EVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHS 537 S RRT EV + + +IE+E + + +SN+G+I+ L K Sbjct: 478 NS-----RRTELMIGEVL----SLEDEDLIEEEDVLITLSNKGYIKRLAQDEFRAQKRGG 528 Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPA 577 + + D ++ + T D +L + G+ Y L A Sbjct: 529 RGVQGTGVNDDDFVRELVSTSTHDTLLFFTNFGRVYRLKA 568 >gi|90960996|ref|YP_534912.1| DNA gyrase subunit A [Lactobacillus salivarius UCC118] gi|301300485|ref|ZP_07206684.1| DNA gyrase, A subunit [Lactobacillus salivarius ACS-116-V-Col5a] gi|90820190|gb|ABD98829.1| DNA gyrase subunit A [Lactobacillus salivarius UCC118] gi|300851932|gb|EFK79617.1| DNA gyrase, A subunit [Lactobacillus salivarius ACS-116-V-Col5a] Length = 850 Score = 394 bits (1011), Expect = e-107, Method: Compositional matrix adjust. Identities = 216/572 (37%), Positives = 340/572 (59%), Gaps = 20/572 (3%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 +K V L + +L YA+S I RA+PD+RDG KPVHRRI++ M+E+G+ +KKSA Sbjct: 8 IKDVDLSKVMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPYKKSA 67 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 RIVG+V+GK HPHGD ++Y+S+VR+AQ F RY L+ G GNFG++DGD AAA RYTEARM Sbjct: 68 RIVGDVMGKFHPHGDSAIYESMVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAMRYTEARM 127 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 +++ +L+ +++D +DF+ Y+ + EPVV P++FPNLL NG +GIAVGM T+IP HN+ Sbjct: 128 SKITLEMLRDINKDTIDFQPNYDGTEREPVVLPARFPNLLVNGATGIAVGMTTNIPPHNL 187 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ L+ NP+++ L+E I GPDFPTG I++ + I ++Y G+G +RA+ Sbjct: 188 GEVISGIHMLMKNPDVTTADLMEAIPGPDFPTGAIVM-GKSGIRKAYETGKGTVTLRAKV 246 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316 ++E G IVV E+PY V K+RLIE+IAEL K+I + D++DES + V Sbjct: 247 EIDEQANGKQQIVVHELPYMVNKARLIERIAELAREKKIEGITDVKDESDREGMRVTIDV 306 Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376 R + +++ +++ L+ M+T F NM + G P+++ L IL+ +L H+ EV+ RR+ Sbjct: 307 RRDVSASVVLNNLYKLTLMQTTFGFNMLAIVNG-TPKILSLKQILQYYLKHQEEVIRRRT 365 Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVDAILN 433 F ++ R IL+GL IA +ID II IIR P K +++ + L++ Q AIL+ Sbjct: 366 EFELKKAKARAHILEGLRIALDHIDAIINIIRGSQSPDVAKDRLMNEYQLSDKQAQAILD 425 Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493 +RL L LE ++++E +A + +L ++ I E+ E++E F G Sbjct: 426 MRLVRLTGLERDKVENEYSKTMAAIADYEDILAKPERIDKIIYEELLEIQEKF------G 479 Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD--------LSALHF 545 R T V + + +IE+E + V +++ G+I+ L + + + Sbjct: 480 DERRTELMVGEV-LSIEDEDLIEEENVVVTLTHNGYIKRLPTSDFKAQNRGGRGVQGMGV 538 Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPA 577 + D ++ L T D +L + GK Y + A Sbjct: 539 HDDDFIEHLLTTSTHDELLFFTNVGKVYRMKA 570 >gi|281306922|pdb|2WL2|A Chain A, Crystal Structure Of N-Terminal Domain Of Gyra With The Antibiotic Simocyclinone D8 gi|281306923|pdb|2WL2|B Chain B, Crystal Structure Of N-Terminal Domain Of Gyra With The Antibiotic Simocyclinone D8 gi|315583409|pdb|2Y3P|A Chain A, Crystal Structure Of N-Terminal Domain Of Gyra With The Antibiotic Simocyclinone D8 gi|315583410|pdb|2Y3P|B Chain B, Crystal Structure Of N-Terminal Domain Of Gyra With The Antibiotic Simocyclinone D8 Length = 522 Score = 394 bits (1011), Expect = e-107, Method: Compositional matrix adjust. Identities = 223/523 (42%), Positives = 319/523 (60%), Gaps = 47/523 (8%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + V++ L+ YL YA+S I RA+PD+RDG KPVHRR+++AM+ +G D+ A+KKSA Sbjct: 7 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 66 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG+IDGDSAAA RYTE R+ Sbjct: 67 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 126 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 ++A ++ ++++ VDF D Y+ + P V P+K PNLL NG+SGIAVGMAT+IP HN+ Sbjct: 127 AKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 186 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ LA ID+ +ISIE L+E+I GPDFPT II R I E+YR GRG +RAR Sbjct: 187 TEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAII-NGRRGIEEAYRTGRGKVYIRARA 245 Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314 VE + G I+V EIPYQV K+RLIEKIAEL+ KR+ + +RDES +D +RIV+ Sbjct: 246 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 305 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K ++ ++++ +++ + ++ F +NM L G+ P++M L I+ ++ HRREV+ R Sbjct: 306 VKRDAVG-EVVLNNLYSQTQLQVSFGINMVALHHGQ-PKIMNLKDIIAAFVRHRREVVTR 363 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----------- 420 R+ F ++ R IL+ L +A NID II +IR+ P K +V+ Sbjct: 364 RTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAML 423 Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457 + LTE Q AIL+LRL+ L LE ++ E LL + Sbjct: 424 ERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQ 483 Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500 ++ +L S + I E+ V+E F +RRT Sbjct: 484 IAELLRILGSADRLMEVIREELELVREQFGD-----KRRTEIT 521 >gi|225868522|ref|YP_002744470.1| DNA gyrase subunit A [Streptococcus equi subsp. zooepidemicus] gi|225701798|emb|CAW99217.1| DNA gyrase subunit A [Streptococcus equi subsp. zooepidemicus] Length = 831 Score = 394 bits (1011), Expect = e-107, Method: Compositional matrix adjust. Identities = 232/634 (36%), Positives = 375/634 (59%), Gaps = 43/634 (6%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 V+L ++ ++ YA+S I RA+PD+RDG KPVHRRI++ M+E+G+ KKSARI Sbjct: 9 VNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHKKSARIT 68 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+V+GK HPHGD S+Y+++VR+AQ + R+ L+ G GNFG++DGD AAA RYTEARM+++ Sbjct: 69 GDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTEARMSKI 128 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A +L+ ++++ VDF+D Y+ + EP+V P++FPNLL NG +GIAVGMAT+IP HN+ E Sbjct: 129 ALELLKDINKNTVDFQDNYDGNEREPLVLPARFPNLLVNGATGIAVGMATNIPPHNLAEA 188 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 +A +++NP+ + L+E + GPDFPTG +++ R I ++Y G+G +R+R +E Sbjct: 189 IDAVKMVMENPDCTTRDLMEVLPGPDFPTGALVM-GRSGIHKAYETGKGSIVLRSRTEIE 247 Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLFPKNR 318 G IVVTE PY + K+++ E I L KRI + +RDES+ + VR V+ + R Sbjct: 248 TTSTGRERIVVTEFPYGINKTKVHEHIVRLAQEKRIEGITAVRDESSRQGVRFVIEVR-R 306 Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378 ++++ ++F L+ ++T F NM + G +P+++ L I+ ++ H+++V+ RR+ F Sbjct: 307 DASANVILNNLFKLTSLQTNFSFNMLAIE-GGIPKILSLRQIIDNYILHQKDVITRRTQF 365 Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAILNLR 435 + R IL+GLLIA ++DE+IAIIRN + + ++SRF L+E Q AIL++R Sbjct: 366 DKDKAEARAHILEGLLIALDHLDEVIAIIRNSETDIIAQAELMSRFDLSERQSQAILDMR 425 Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495 LR L LE +I+SE D+LLA + +L ++ I E+ E+K ++ R Sbjct: 426 LRRLTGLERDKIQSEYDDLLALIADLADILARPERIEAIIKEEMEEIKRKYANP-----R 480 Query: 496 RTTFC--EVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHF 545 RT EV + + +IE+E + + +SN G+I RS K + Sbjct: 481 RTELMIGEVL----SLEDEDLIEEEDVLITLSNNGYIKRLAQDEFRSQKRGGRGVQGTGV 536 Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLLSGRGHGEAI 590 + D ++ + T D +L + G+ Y LP NLL GE I Sbjct: 537 NDDDFVRELVSTSTHDTLLFFTNFGRVYRLKAYEIPEYGRAAKGLPVINLLK-LDDGETI 595 Query: 591 QLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAF 624 Q +I+ +DI+ + + +T + +V ++ + F Sbjct: 596 QTIINAK-KEDILDKYFFFTTKQGIVKRTEVSEF 628 >gi|289449779|ref|YP_003475556.1| DNA gyrase subunit A [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289184326|gb|ADC90751.1| DNA gyrase, A subunit [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 867 Score = 394 bits (1011), Expect = e-107, Method: Compositional matrix adjust. Identities = 229/631 (36%), Positives = 369/631 (58%), Gaps = 37/631 (5%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 N+ V L + + ++ YA+S I +RA+PD+RDG KPVHRRI+ +M G ++K Sbjct: 25 NIVPVDLEQEMRKSFIDYAMSVISDRALPDIRDGLKPVHRRILFSMFSQGFTPDKPYRKC 84 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 A VG V+G HPHGD +VYDS+VRLAQ F R+ ++ G GNFG+ DGD AAYRYTEAR Sbjct: 85 ATTVGNVLGHFHPHGDAAVYDSMVRLAQDFSMRHTMVDGHGNFGSRDGDPPAAYRYTEAR 144 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 +T++A +++ ++++ VDF+ ++E++ EP+V PS+FPNLL NG++GIAVGMAT IP HN Sbjct: 145 LTKIAVEMMRDINKNTVDFKPNFDEQEMEPIVLPSRFPNLLVNGSTGIAVGMATDIPPHN 204 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 + E +A + I+NP+ +E ++E + GPDFPTGG I+ I E+YR G+G VR+ Sbjct: 205 LGETIDAVVMRINNPDCDLEDIMEILPGPDFPTGGTIL-GLSGIRETYRTGKGRITVRSA 263 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES--AEDVRIVL 313 +E++ IVV ++PY V K+RLIEK+A+L+ KRI + IRDES E++RIV+ Sbjct: 264 ASIEDMPNNRHKIVVHDLPYMVNKARLIEKMADLVKEKRIDGISMIRDESDRNEEIRIVI 323 Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL---SMGRV-PQVMPLDGILKEWLAHRR 369 K R +P +++ ++ ++ ++ F NM L + GR P+V+ L L ++AH++ Sbjct: 324 ELK-RDANPQVVLNRLYKMTQLQDNFNANMLALVPDAQGRYEPKVVTLLDCLDHYIAHQK 382 Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTEN 426 V+ RR+ F + R I++GLL A NIDE+I IIR NE+ K + RF + Sbjct: 383 SVVLRRTKFDLDKALARQHIVQGLLKAIDNIDEVIRIIRSSSNEETAKQALCERFDFSIR 442 Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486 Q I+++RL L LE +++ ELD L+ + E + ++N NQ+ C+ E+ Sbjct: 443 QAQHIVDMRLGRLTALERERLQKELDELIVKIEYFNRIINES-SLLNQVICD-----ELT 496 Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD------- 539 T +R T E D+ ++ + E+E + + +++ G++ K VD Sbjct: 497 DLKTRYANKRRTVIEPYSLDEFEDEELVKEEE-VVITLTHFGYV---KRQPVDTYQQQHR 552 Query: 540 ----LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEAIQLL 593 +S L +E D ++ + T D +L + G+ + L + +GR G+AI L Sbjct: 553 GGRGISGLQTREDDFVETLVTTSTHDHLLFFTNTGRVFRLKGYQIPEAGRQAKGQAIVNL 612 Query: 594 IDLNHNQD---IVTAFVYDSTCKLLVVSSKG 621 + L + ++T ++ LL+ +++G Sbjct: 613 LQLVEGEKVRTVITVHEFNREDYLLMATARG 643 >gi|227432901|ref|ZP_03914845.1| DNA gyrase subunit A [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227351334|gb|EEJ41616.1| DNA gyrase subunit A [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 848 Score = 394 bits (1011), Expect = e-107, Method: Compositional matrix adjust. Identities = 232/621 (37%), Positives = 364/621 (58%), Gaps = 56/621 (9%) Query: 12 LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71 L + +K +L ++ +L+YA+S I RA+PD+RDG KPVHRRI+++M E G Sbjct: 4 LNDSRIKNANLSEQMKTSFLSYAMSVIVARALPDVRDGMKPVHRRILYSMIEQGNTPDKP 63 Query: 72 FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131 KKSARIVG+V+GK HPHGD ++Y+S+VR+AQ F R+ LI G GNFG++DGD AAA RY Sbjct: 64 HKKSARIVGDVMGKYHPHGDSAIYESMVRMAQHFSYRHMLIDGHGNFGSVDGDGAAAMRY 123 Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191 TEAR+++VA +++ +++D V+F Y+ E+ EP V P++FPNLL NG +GIAVGM T+I Sbjct: 124 TEARLSKVAMEMVRDLNKDTVNFIPNYDGEEREPEVLPARFPNLLVNGATGIAVGMTTNI 183 Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251 P+HN+ E+ A L++NPE + L+E + GPDFPTGGI++ + I +Y GRG Sbjct: 184 PTHNLAEVIFALHILMNNPEATTADLMEALPGPDFPTGGIVM-GKSGIRRAYETGRGTVT 242 Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311 VRA+ +E++ G IVVTE+PY V K+RLIE+I+EL K+I + IRDES + Sbjct: 243 VRAKVDIEQLKSGKEQIVVTELPYAVNKARLIERISELARDKKIEGITGIRDESDREGLR 302 Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371 + R +++ +++ + ++T F NM + G P+ M L IL +LAH+REV Sbjct: 303 ISIDVRRDASASVILNNLYKQTLLQTSFSFNMLAIDHG-APKTMSLKEILVAYLAHQREV 361 Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLTENQV 428 + RR+ F +Q R IL+GL IA +IDEII IIR+ ++ K +++ ++L++ Q Sbjct: 362 IRRRTVFELQKAQARAHILEGLRIALDHIDEIITIIRSSKTSEEAKTRLINGYALSDKQA 421 Query: 429 DAILNLRLRSLRKL------EEYQ----IKSELDNLLAEKEKIDSLLNSGKQQWNQIACE 478 AIL++RL L L EEYQ + ++L ++LA +E++D ++ +N Sbjct: 422 QAILDMRLVRLTGLERDKIEEEYQKLVALIADLKDILAHEERVDEII------YN----- 470 Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV 538 E+ T G +R T +V + + +IE+E + V ++N G+I+ + + Sbjct: 471 -----ELLEIQTKFGDKRRTELQVGDV-LSIEDEDLIEEEDVIVTLTNSGYIKRVATGEF 524 Query: 539 D--------LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL--------------- 575 + ++ + D + + T D +L + GK Y + Sbjct: 525 KAQNRGGRGVQGMNVHDEDFVDQMISTSTHDTLLFFTNKGKVYRMKGYEVPEYGRQAKGI 584 Query: 576 PAGNLLSGRGHGEAIQLLIDL 596 P NLL+ G+ E IQ +I++ Sbjct: 585 PVVNLLNFEGN-EKIQTVINV 604 >gi|225870526|ref|YP_002746473.1| DNA gyrase subunit A [Streptococcus equi subsp. equi 4047] gi|225699930|emb|CAW93866.1| DNA gyrase subunit A [Streptococcus equi subsp. equi 4047] Length = 831 Score = 394 bits (1011), Expect = e-107, Method: Compositional matrix adjust. Identities = 232/634 (36%), Positives = 375/634 (59%), Gaps = 43/634 (6%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 V+L ++ ++ YA+S I RA+PD+RDG KPVHRRI++ M+E+G+ KKSARI Sbjct: 9 VNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHKKSARIT 68 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+V+GK HPHGD S+Y+++VR+AQ + R+ L+ G GNFG++DGD AAA RYTEARM+++ Sbjct: 69 GDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTEARMSKI 128 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A +L+ ++++ VDF+D Y+ + EP+V P++FPNLL NG +GIAVGMAT+IP HN+ E Sbjct: 129 ALELLKDINKNTVDFQDNYDGNEREPLVLPARFPNLLVNGATGIAVGMATNIPPHNLAEA 188 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 +A +++NP+ + L+E + GPDFPTG +++ R I ++Y G+G +R+R +E Sbjct: 189 IDAVKMVMENPDCTTRDLMEVLPGPDFPTGALVM-GRSGIHKAYETGKGSIVLRSRTEIE 247 Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLFPKNR 318 G IVVTE PY + K+++ E I L KRI + +RDES+ + VR V+ + R Sbjct: 248 TTSTGRERIVVTEFPYGINKTKVHEHIVRLAQEKRIEGITAVRDESSRQGVRFVIEVR-R 306 Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378 ++++ ++F L+ ++T F NM + G +P+++ L I+ ++ H+++V+ RR+ F Sbjct: 307 DASANVILNNLFKLTSLQTNFSFNMLAIE-GGIPKILSLRQIIDNYILHQKDVITRRTQF 365 Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAILNLR 435 + R IL+GLLIA ++DE+IAIIRN + + ++SRF L+E Q AIL++R Sbjct: 366 DKDKAEARAHILEGLLIALDHLDEVIAIIRNSETDIIAQAELMSRFDLSERQSQAILDMR 425 Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495 LR L LE +I+SE D+LLA + +L ++ I E+ E+K ++ R Sbjct: 426 LRRLTGLERDKIQSEYDDLLALIADLADILARPERIEAIIKEEMEEIKRKYANP-----R 480 Query: 496 RTTFC--EVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHF 545 RT EV + + +IE+E + + +SN G+I RS K + Sbjct: 481 RTELMIGEVL----SLEDEDLIEEEDVLITLSNNGYIKRLAQDEFRSQKRGGRGVQGTGV 536 Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLLSGRGHGEAI 590 + D ++ + T D +L + G+ Y LP NLL GE I Sbjct: 537 NDDDFVRELVSTSTHDTLLFFTNFGRVYRLKAYEIPEYGRAAKGLPVINLLK-LDDGETI 595 Query: 591 QLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAF 624 Q +I+ +DI+ + + +T + +V ++ + F Sbjct: 596 QTIINAK-KEDILDKYFFFTTKQGIVKRTEVSEF 628 >gi|264677567|ref|YP_003277473.1| DNA gyrase subunit alpha [Comamonas testosteroni CNB-2] gi|262208079|gb|ACY32177.1| DNA gyrase, A subunit [Comamonas testosteroni CNB-2] Length = 898 Score = 394 bits (1011), Expect = e-107, Method: Compositional matrix adjust. Identities = 237/619 (38%), Positives = 352/619 (56%), Gaps = 62/619 (10%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 +SL + YL YA+S I RA+PD RDG KPVHRR+++AM E+ D+ +KKSARIV Sbjct: 11 ISLEEEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMHELNNDWNRPYKKSARIV 70 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGD +VYD++VR+AQ F R+ L+ GQGNFG++DGDSAAA RYTE R++++ Sbjct: 71 GDVIGKYHPHGDSAVYDTIVRMAQDFSLRHMLVDGQGNFGSVDGDSAAAMRYTEIRLSKI 130 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A +L +D++ VDF Y+ + EP+V PS+ PNLL NG+SGIAVGMAT+IP HN+ E+ Sbjct: 131 AHEMLGDIDKETVDFGPNYDGSEQEPLVLPSRLPNLLVNGSSGIAVGMATNIPPHNLNEV 190 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 + L L+ NPE SI++L+E I PDFPT GII + E YR GRG +RA+ E Sbjct: 191 VDGCLHLLQNPEASIDELMEIIPAPDFPTAGIIY-GINGVKEGYRTGRGRVVMRAKCHFE 249 Query: 260 EVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318 ++ +G I+V E+PYQV K L E++AEL+ K+I + I+DES + ++ R Sbjct: 250 DIDKGQRQSIIVDELPYQVNKKTLQERMAELVHEKKIEGISHIQDESDKSGMRLVIELKR 309 Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378 P++++ +++ L+ ++ F +NM L G+ P++ L +++ +L HRREV+ RR+ F Sbjct: 310 GEVPEVVLNNLYKLTQLQDTFGMNMVALVNGQ-PKLCNLKDLIQVFLEHRREVVTRRTVF 368 Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV-----------------MVSR- 420 ++ R +L+GL +A NID+ IAIIRN P PV M++R Sbjct: 369 ELRKARDRGHVLEGLAVALANIDDFIAIIRNAPTP-PVAKAALMEKSWDSKLVREMLTRT 427 Query: 421 ----------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELD 452 + L+E Q IL +RL+ L LE+ +I +E Sbjct: 428 RTDGGVVNADDYRPEGLEVEFGMQQNGLYRLSETQAQEILQMRLQRLTGLEQDKIVAEYK 487 Query: 453 NLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ 512 ++++ E + +L ++ I E+ VK F +S G RR+T E S D +T + Sbjct: 488 DVMSVIEDLLDILAKPERVSIIIGEELNAVKAEFGQSKK-GERRST-VEYSAQDLST--E 543 Query: 513 AMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRIL 564 +I + V +S+ G+I RS K A KE D + A+T D +L Sbjct: 544 DLITPTDMVVTLSHTGYIKSQPLSEYRSQKRGGRGKQATATKEDDWIDQLFIANTHDYLL 603 Query: 565 LLSTDGKAYTLPAGNLLSG 583 S G+ Y L + SG Sbjct: 604 CFSNRGRMYWLKVWEVPSG 622 >gi|326692336|ref|ZP_08229341.1| DNA gyrase subunit A [Leuconostoc argentinum KCTC 3773] Length = 840 Score = 393 bits (1010), Expect = e-107, Method: Compositional matrix adjust. Identities = 228/616 (37%), Positives = 355/616 (57%), Gaps = 56/616 (9%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 ++ +L ++ +L+YA+S I RA+PD+RDG KPVHRRI+++M E G KKSA Sbjct: 9 IRNANLSEQMKTSFLSYAMSVIVARALPDVRDGMKPVHRRILYSMIEQGNTPDKPHKKSA 68 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 RIVG+V+GK HPHGD ++Y+S+VR+AQPF R+ L+ G GNFG++DGD AAA RYTEAR+ Sbjct: 69 RIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRHMLVDGHGNFGSVDGDGAAAMRYTEARL 128 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 ++VA +++ +++D V+F Y+ E+ EP V P++FPNLL NG +GIAVGMAT+IP+HN+ Sbjct: 129 SKVAMEMVRDLNKDTVNFVPNYDGEEREPEVLPARFPNLLVNGATGIAVGMATNIPTHNL 188 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ A L++NP + L+E + GPDFPTGGI++ + I +Y GRG VRA+ Sbjct: 189 GEVISAIHVLMNNPTATTSDLMEALPGPDFPTGGIVM-GKSGIRRAYETGRGRVTVRAKV 247 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316 +E+ G I+VTE+PY V K+RLIE+I+EL KRI + IRDES D + Sbjct: 248 DIEQTKTGKEQIIVTELPYAVNKARLIERISELARDKRIEGITGIRDESDRDGLRISIDV 307 Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376 R +++ +++ + ++T F NM ++ G+ PQ M L IL+ +L H+REV+ RR+ Sbjct: 308 RRDASASVILNNLYKETLLQTNFSFNMLAINGGK-PQTMSLKAILEAYLTHQREVIRRRT 366 Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLTENQVDAILN 433 +F +Q R IL+GL IA +ID II IIR+ ++ K ++ ++L++ Q AIL+ Sbjct: 367 AFDLQKAQARAHILEGLRIALDHIDAIITIIRSSATSEEAKTRLIDGYALSDKQAQAILD 426 Query: 434 LRLRSLRKLE------EYQ----IKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483 +RL L LE EYQ + ++L ++LA +E++D L+ Sbjct: 427 MRLVRLTGLERDKIEDEYQKLVELIADLKDILAHQERVDQLI----------------YD 470 Query: 484 EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD---- 539 E+ T G R T +V + +IE+E + + ++ G+I+ + Sbjct: 471 ELLEIQTKFGDERRTELQVGDV-TTLEDEDLIEEEDVIITLTRNGYIKRVPQAEFKAQNR 529 Query: 540 ----LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL---------------PAGNL 580 + ++ + D + + T D +L + GK Y + P NL Sbjct: 530 GGRGVQGMNVNDEDFVDQMVATSTHDTLLFFTNKGKVYRMKGYEVPEYGRQAKGIPVVNL 589 Query: 581 LSGRGHGEAIQLLIDL 596 L G E IQ +I++ Sbjct: 590 LHFEGD-EKIQTVINV 604 >gi|227891674|ref|ZP_04009479.1| DNA gyrase subunit A [Lactobacillus salivarius ATCC 11741] gi|227866477|gb|EEJ73898.1| DNA gyrase subunit A [Lactobacillus salivarius ATCC 11741] Length = 850 Score = 393 bits (1010), Expect = e-107, Method: Compositional matrix adjust. Identities = 216/572 (37%), Positives = 340/572 (59%), Gaps = 20/572 (3%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 +K V L + +L YA+S I RA+PD+RDG KPVHRRI++ M+E+G+ +KKSA Sbjct: 8 IKDVDLSKVMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPYKKSA 67 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 RIVG+V+GK HPHGD ++Y+S+VR+AQ F RY L+ G GNFG++DGD AAA RYTEARM Sbjct: 68 RIVGDVMGKFHPHGDSAIYESMVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAMRYTEARM 127 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 +++ +L+ +++D +DF+ Y+ + EPVV P++FPNLL NG +GIAVGM T+IP HN+ Sbjct: 128 SKITLEMLRDINKDTIDFQPNYDGTEREPVVLPARFPNLLVNGATGIAVGMTTNIPPHNL 187 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ L+ NP+++ L+E I GPDFPTG I++ + I ++Y G+G +RA+ Sbjct: 188 GEVISGIHMLMKNPDVTTADLMEAIPGPDFPTGAIVM-GKSGIRKAYETGKGTVTLRAKV 246 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316 ++E G IVV E+PY V K+RLIE+IAEL K+I + D++DES + V Sbjct: 247 EIDEQANGKQQIVVHELPYMVNKARLIERIAELAREKKIEGITDVKDESDREGMRVTIDV 306 Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376 R + +++ +++ L+ M+T F NM + G P+++ L IL+ +L H+ EV+ RR+ Sbjct: 307 RRDVSASVVLNNLYKLTLMQTTFGFNMLAIVNG-TPKILSLKQILQYYLKHQEEVIRRRT 365 Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVDAILN 433 F ++ R IL+GL IA +ID II IIR P K +++ + L++ Q AIL+ Sbjct: 366 EFELKKAKARAHILEGLRIALDHIDAIINIIRGSQSPDVAKDRLMNEYQLSDKQAQAILD 425 Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493 +RL L LE ++++E +A + +L ++ I E+ E++E F G Sbjct: 426 MRLVRLTGLERDKVENEYSKTMAAIADYEDILAKPERIDKIIYEELLEIQEKF------G 479 Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD--------LSALHF 545 R T V + + +IE+E + V +++ G+I+ L + + + Sbjct: 480 DERRTELMVGEV-LSIEDEDLIEEENVVVTLTHNGYIKRLPTSDFKAQNRGGRGVQGMGV 538 Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPA 577 + D ++ L T D +L + GK Y + A Sbjct: 539 HDDDFIEHLLTTSTHDELLFFTNVGKVYRMKA 570 >gi|119944871|ref|YP_942551.1| DNA gyrase, A subunit [Psychromonas ingrahamii 37] gi|119863475|gb|ABM02952.1| DNA gyrase subunit A [Psychromonas ingrahamii 37] Length = 898 Score = 393 bits (1010), Expect = e-107, Method: Compositional matrix adjust. Identities = 255/734 (34%), Positives = 404/734 (55%), Gaps = 74/734 (10%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 +V +++ L+ YL YA+S I RA+PD+RDG KPVHRR++ AM+ + D+ +KKS Sbjct: 7 DVSPINIEDELKTSYLEYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLRNDWNKPYKKS 66 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 ARIVG+VIGK HPHGD +VYD++VR+AQ F RY L+ GQGNFG++DGDSAAA RYTE R Sbjct: 67 ARIVGDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIR 126 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 M ++A +L ++++ VDF Y+ + P V P+K PNLL NG+SGIAVGMAT+IP HN Sbjct: 127 MQKLAHELLADLEKETVDFVPNYDGTEFIPEVMPTKIPNLLINGSSGIAVGMATNIPPHN 186 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 + E+ + LALI++ +I+I++L+E+I GPDFPT GII R+ I+++Y GRG +VRA+ Sbjct: 187 LGEVIDGCLALIEDADITIDQLIEFIPGPDFPTSGII-NGRKGIIDAYHTGRGKIKVRAK 245 Query: 256 WCVEEVGR-GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314 +E + G IVV E+PYQV K+RLIEKIAE + K+I + +RDES +D ++ Sbjct: 246 ADIEVNDKTGRETIVVHELPYQVNKARLIEKIAEFVKDKKIEGISALRDESDKDGMRMVV 305 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 R ++++ +++ + M+ F +N L G+ P++ L +L+ ++ HRREV+ R Sbjct: 306 EVKRGEVGEVVLNNLYAQTQMQVTFGINAVALDHGQ-PKLFNLKEMLEAFILHRREVVTR 364 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS--------------- 419 R+ F ++ R IL+GL I+ NI+ IIA+IR+ P ++ Sbjct: 365 RTVFELKKARERAHILEGLAISLANIEPIIALIRHSATPGEAKIALQAQGWNLGHVSAML 424 Query: 420 ----------------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457 ++ +TE Q AIL+LRL+ L LE +I +E LL Sbjct: 425 EASGVDAARPDGLAIEFGVRDNQYFMTEVQAQAILDLRLQKLTGLEHEKILTEYKELLEI 484 Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517 + +L + ++ I E+ E+K F+ RRT E++ ++ + +I + Sbjct: 485 IAALLFILENPERLMEVIREELEEIKANFADP-----RRT---EITASETDLSIEDLITE 536 Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569 E + V +S+ G+++ S + +A K+ D ++ L A T D IL ST Sbjct: 537 EDVVVTLSHEGYVKYQVLSDYESQRRGGKGKAATKMKDEDFIEKLLVASTHDTILCFSTR 596 Query: 570 GKAYTLPAGN--LLSGRGHGEAIQLLIDLNHNQDIVTAF-VYDSTCKLLVVSSKGNAFIV 626 G+ Y L L S + G I ++ L + I V D V + N V Sbjct: 597 GRLYWLKVFQLPLASRQARGRPIVNILPLEEGERITAILPVRDYADDKFVFMATANG-TV 655 Query: 627 EESEIIANTR-KGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGK 685 +++ + A +R + + ++ E +L+ V + + +++IFS GK Sbjct: 656 KKTALSAYSRPRNSGLIAINLNEDNELI------GVGITDGSNEIMIFS-------DAGK 702 Query: 686 GVRLQSYKDGGISD 699 VR + ++ + D Sbjct: 703 VVRFKEAEESAVLD 716 >gi|333030660|ref|ZP_08458721.1| DNA gyrase, A subunit [Bacteroides coprosuis DSM 18011] gi|332741257|gb|EGJ71739.1| DNA gyrase, A subunit [Bacteroides coprosuis DSM 18011] Length = 859 Score = 393 bits (1010), Expect = e-107, Method: Compositional matrix adjust. Identities = 223/611 (36%), Positives = 362/611 (59%), Gaps = 28/611 (4%) Query: 12 LVEEN-VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70 +VE++ + +++ ++ Y+ Y++S I RA+PD++DGFKPVHRRI++ M E+G Sbjct: 1 MVEQDRIIKINIEDEMKSSYIDYSMSVIVSRALPDVKDGFKPVHRRILYGMMELGNTSDK 60 Query: 71 AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130 +KKSARIVGEV+GK HPHGD SVY ++VR+AQ + RYPL+ GQGNFG++DGDS AA R Sbjct: 61 PYKKSARIVGEVLGKYHPHGDSSVYLAMVRMAQEWAMRYPLVDGQGNFGSVDGDSPAAMR 120 Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190 YTEAR+ ++ E ++Q + ++ VDF ++ EP V P++ PNLL NG SGIAVGMAT+ Sbjct: 121 YTEARLNKMGEEMMQDLYKETVDFDPNFDNTLQEPKVLPARIPNLLVNGASGIAVGMATN 180 Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250 +P HN+ E+ +A A ++N EI +E L++Y+ PDFPTGG I + E++ GRG Sbjct: 181 MPPHNLSEVIDACQAYLENTEIDVEGLMQYVKAPDFPTGGFIY-GMSGVKEAFETGRGRV 239 Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-V 309 +RAR + E G+ IV++EIPY V K+ LI+ IA+L+ KRI + ++ DES + Sbjct: 240 VMRARAEI-EAGQTHEKIVISEIPYNVNKADLIKHIADLVNEKRIEGIANVNDESDRSGM 298 Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369 RIV+ K R + ++++ ++ ++ +++ F +N L GR P + L ++ ++ HR Sbjct: 299 RIVVDCK-RDANANVVLNKLYKMTALQSSFGVNNVALVDGR-PHTLNLRDLVANFVEHRH 356 Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTEN 426 +V+ RR+ F ++ + R IL+GL+IA NIDE+I IIR P +++RF L+E Sbjct: 357 DVVIRRTQFDLRKAEERAHILEGLIIASDNIDEVIKIIRAAKNPNEAITNLMTRFELSEI 416 Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486 Q AI+ +RLR L L + Q+ E ++A + +LN+ ++ I E++EVK+ + Sbjct: 417 QARAIVEMRLRQLTGLMQDQLHGEYQEVMARIAEYKEILNNDEKCREVIKAELQEVKDKY 476 Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--------SLKSHSV 538 RR+ E+ + + + +P+ + IS+ G+I+ S V Sbjct: 477 GDE-----RRS---EIVYSSEEFNPEDFYSNDPMIITISHMGYIKRTPLSDFTSQNRGGV 528 Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDL 596 ++ D ++ A + ++ + GK Y L + G G AIQ L+++ Sbjct: 529 GSKGTDTRDQDFIEHIYPATMHNTMMFFTQMGKCYWLKVYEIPEGSKNSKGRAIQNLLNI 588 Query: 597 NHNQDIVTAFV 607 + N D V A++ Sbjct: 589 DRN-DAVNAYL 598 >gi|331086962|ref|ZP_08336038.1| DNA gyrase subunit A [Lachnospiraceae bacterium 9_1_43BFAA] gi|330409623|gb|EGG89062.1| DNA gyrase subunit A [Lachnospiraceae bacterium 9_1_43BFAA] Length = 835 Score = 393 bits (1010), Expect = e-107, Method: Compositional matrix adjust. Identities = 234/647 (36%), Positives = 373/647 (57%), Gaps = 38/647 (5%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 + V V L+ +E+ Y+ YA+S I RA+PD+RDG KPV RRI+++M E+ +K Sbjct: 7 DKVHEVDLKKTMEDSYIDYAMSVIASRALPDVRDGLKPVQRRILYSMIELNNGPDKPHRK 66 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 ARIVG+ +GK HPHGD S+Y +LV +AQ + RYPL+ G GNFG++DGD AAA RYTEA Sbjct: 67 CARIVGDTMGKYHPHGDSSIYGALVNMAQEWSTRYPLVDGHGNFGSVDGDGAAAMRYTEA 126 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 R+++++ + +++D VDF ++E + EP V P++FPNLL NGTSGIAVGMAT+IP H Sbjct: 127 RLSKISMELTADINKDTVDFTPNFDETEKEPAVLPARFPNLLVNGTSGIAVGMATNIPPH 186 Query: 195 NVQEICEAALALID-----NPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249 N++E+ A + +ID N E SIE +L+ + GPDFPTG +I+ +R I E+YR GRG Sbjct: 187 NLREVIAAVVKIIDDQIEENGETSIEDILQIVKGPDFPTGAMILGTR-GIEEAYRTGRGK 245 Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309 RVRA +E + G IVVTE+PY V K+RLIEKIAEL+ K+I + D+ D+S + Sbjct: 246 IRVRAVTDIEPMANGKSRIVVTELPYMVNKARLIEKIAELVRDKKIDGITDLSDQSNREG 305 Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369 + R ++ ++++ ++ + ++ F + M L + P+VM + +L +L H+ Sbjct: 306 MRICIELRRDVNANVVLNQLYKHTQLQDTFGVIMLAL-VNNEPKVMNILEMLNYYLRHQE 364 Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTEN 426 EV+ RR+ + + + R IL+GLLIA NIDE+I IIRN + ++ F LT+ Sbjct: 365 EVVTRRTKYELNKAEERAHILEGLLIALDNIDEVIRIIRNSKNAQAAKEGLIEAFQLTDV 424 Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486 Q AI+++RLR+L LE ++++E L+ ++ ++L K I +EI Sbjct: 425 QAQAIVDMRLRALTGLEREKLENEYKELMERIGELRAILADRKLLLGVIK------EEIL 478 Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD------- 539 S G R T D +T + +I ++ + + ++ G+I+ + + + Sbjct: 479 VISGKYGDDRRTSIGFDELDLST--EDLIPEQDVVITMTKLGYIKRMTTDTFKSQNRGGK 536 Query: 540 -LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEAIQLLIDL 596 + + E D ++ T + I+ + G+ Y + + +GR G AI L+ L Sbjct: 537 GIKGMQTIEEDYVEELFMTSTHNYIMFFTNTGRVYRMKGYEIPEAGRTARGTAIINLLQL 596 Query: 597 NHNQDIVTAFV----YDSTCKLLVVSSKGNAFIVEESEII--ANTRK 637 ++ I TA + Y+ L + + KG +V+++ I AN RK Sbjct: 597 MPDEKI-TAMIPIREYEDGKYLFMATKKG---LVKKTPITDYANVRK 639 >gi|326772838|ref|ZP_08232122.1| DNA gyrase, A subunit [Actinomyces viscosus C505] gi|326637470|gb|EGE38372.1| DNA gyrase, A subunit [Actinomyces viscosus C505] Length = 893 Score = 393 bits (1010), Expect = e-107, Method: Compositional matrix adjust. Identities = 237/667 (35%), Positives = 376/667 (56%), Gaps = 42/667 (6%) Query: 9 SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68 +N E ++ V L+ ++ YL YA+S I RA+PD+RDG KPVHRR+++AM + G Sbjct: 15 TNVAAPERIQPVDLQMEMQRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMYDGGYRP 74 Query: 69 GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128 A+F KS+RIVG+V+G HPHGD ++YD+L RL Q + RYPL++GQGNFG AA Sbjct: 75 TASFSKSSRIVGDVMGTYHPHGDSAIYDALARLVQWWSLRYPLVAGQGNFGTPGNLGPAA 134 Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188 RYTE +M +A +L+ +DED+VDF+D Y+ + EPV+ PS+FPNLL NG+ GIAVGMA Sbjct: 135 PRYTECKMAPLAMEMLRDIDEDSVDFQDNYDGRNQEPVILPSRFPNLLVNGSEGIAVGMA 194 Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYII----GPDFPTGGIIVESRESIVESYR 244 T IP HN++E+ A +++P+ S E+LL+ +I GPDFPTG I+ R I ++YR Sbjct: 195 TRIPPHNLREVARGAQWYLEHPDASREELLDALIERIPGPDFPTGATIL-GRRGIEDAYR 253 Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304 GRG RA VEE+ +G C+VVTE+PYQV L +KIA+L+ ++ + DIRDE Sbjct: 254 TGRGSITQRAVVNVEEI-QGRQCLVVTELPYQVNPDNLADKIAQLVRDGQVTGIADIRDE 312 Query: 305 SAEDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362 ++ R+V+ K ++ +++ +++ + ++ FP NM L G VP+ + LDG ++ Sbjct: 313 TSGRTGQRLVIVLKRDAV-AKVVLNNLYKRTQLQDNFPANMLALVDG-VPRTLSLDGFVR 370 Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVS 419 W+AH+ +V+ RRS FR++ + R+ IL+GLL A +D +IA+IR ++ + ++ Sbjct: 371 HWVAHQIDVIVRRSRFRLRKAEERLHILEGLLKAIDALDAVIALIRRSPTTEEARTGLMG 430 Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479 + E Q +AIL+L+LR L LE +I+ E + L A + + ++ S ++Q ++ E+ Sbjct: 431 LLDVDEAQAEAILSLQLRRLAALERLKIQEESEELRARVKDLREIIASPERQRGIVSDEL 490 Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV- 538 E+ E + RRT D + +I +E + V I+ G+ + ++ S Sbjct: 491 AEIVEKYGDE-----RRTRIVPF---DGEMSMEDLIPEEDVVVTITRSGYAKRTRTDSYR 542 Query: 539 -------DLSALHFKEGDSLKIALHAHTTDRILLLSTD------GKAYTLPAGNLLSGRG 585 + +E D + TT R LL T+ K Y LP G S Sbjct: 543 SQHRGGKGIRGATLREDDVVD-HFFVTTTHRWLLFFTNYGRVYRAKGYELPEGGRDS--- 598 Query: 586 HGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFL 642 G+ + L+ ++I YD L++ + +G SE +N G + Sbjct: 599 KGQHVANLLAFQPGEEIAQVMELQDYDQADYLVLATRRGLVKKTRLSEYNSNRSGGVIAI 658 Query: 643 KVSSEEK 649 + +E+ Sbjct: 659 NLRQDEE 665 >gi|17228355|ref|NP_484903.1| DNA gyrase subunit A [Nostoc sp. PCC 7120] gi|17130205|dbj|BAB72817.1| DNA gyrase A subunit [Nostoc sp. PCC 7120] Length = 872 Score = 393 bits (1010), Expect = e-107, Method: Compositional matrix adjust. Identities = 243/665 (36%), Positives = 375/665 (56%), Gaps = 37/665 (5%) Query: 11 TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70 T +E + LR + YL YA+S I RA+PD RDG KPVHRRI++AM E+GL Sbjct: 2 TTSQERIIPTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMHELGLTHDR 61 Query: 71 AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130 FKK AR+VGEV+GK HPHGD +VYD+LVR+AQ F R PL++G GNFG++D D AA R Sbjct: 62 PFKKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRSPLVNGHGNFGSVDNDPPAAMR 121 Query: 131 YTEARMTQV-AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189 YTE R+ + + +LQ ++ + VDF D ++ EP V PS+ P LL NG+SGIAVGMAT Sbjct: 122 YTECRLQALTSSALLQDIESETVDFADNFDGSQQEPTVLPSRIPQLLLNGSSGIAVGMAT 181 Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249 +IP HN+ E+ + +A+I NPEI+ +L++YI GPDFPTG I+ +I E+Y GRG Sbjct: 182 NIPPHNLGELIDGVVAVIHNPEITDLQLMQYIHGPDFPTGAQIL-GVGAIKEAYTTGRGS 240 Query: 250 FRVRARWCVEEV---GRGSW-CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305 +R +E + GR I++TE+PYQ K+ LIEKIAEL+ KRI + DIRDES Sbjct: 241 ITMRGVANIETIEHRGRPDREAIIITELPYQTNKAALIEKIAELVNDKRIEGIADIRDES 300 Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365 D ++ R P +++ +++ + ++ F NM L G PQ++ L L +L Sbjct: 301 DRDGMRIVIELKRDAYPRVVLNNLYKQTPLQANFGANMLALVNGE-PQILNLKQFLNVFL 359 Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN-EDKP--KPVMVSRFS 422 R E + RR+ + ++ + R +L+GLLIA ++D II +IR D P K +++ + Sbjct: 360 DFRIESITRRTRYELRKAEERDHLLQGLLIALSHLDAIINLIRGASDTPTAKGELITTYM 419 Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482 L+E Q DAIL ++LR L LE +I+ E ++L + + +L ++ I EI ++ Sbjct: 420 LSEVQADAILQMQLRRLTALEADKIRLEHEDLQTQIADLQDILARRERILEIIETEITQI 479 Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL-- 540 K F+ RRT ++ A+ ++ +I E ++++ +G+I+ + ++ + Sbjct: 480 KTSFATP-----RRTV---ITHAEGEIDERDLIANEKAIILLTQQGYIKRMPVNTFEAQS 531 Query: 541 ------SALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEA 589 +A K+ D+++ L D +L S G KAY +P G+ S G Sbjct: 532 RATRGKAAAKVKDDDTIEHFLTCCDHDSVLFFSDRGVVYCLKAYQIPLGSRTS---RGTP 588 Query: 590 IQLLIDLNHNQDIVTAFVYD--STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE 647 I L+ + + I + D ++ + LV+ +KG E +N R + +S E Sbjct: 589 IVQLLPIPKEEKITSIVPVDEFTSEEYLVMLTKGGNIKKTELAAFSNIR-ANGLIAISLE 647 Query: 648 EKMKL 652 E +L Sbjct: 648 EGDQL 652 >gi|15675129|ref|NP_269303.1| DNA gyrase subunit A [Streptococcus pyogenes M1 GAS] gi|71910687|ref|YP_282237.1| DNA gyrase subunit A [Streptococcus pyogenes MGAS5005] gi|18203224|sp|Q9L7Q5|GYRA_STRP1 RecName: Full=DNA gyrase subunit A gi|7532887|gb|AAF63266.1| DNA gyrase A subunit [Streptococcus pyogenes] gi|13622289|gb|AAK34024.1| DNA gyrase A subunit [Streptococcus pyogenes M1 GAS] gi|71853469|gb|AAZ51492.1| DNA gyrase subunit A [Streptococcus pyogenes MGAS5005] Length = 828 Score = 393 bits (1010), Expect = e-107, Method: Compositional matrix adjust. Identities = 222/580 (38%), Positives = 354/580 (61%), Gaps = 26/580 (4%) Query: 12 LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71 + + N+ V+L ++ ++ YA+S I RA+PD+RDG KPVHRRI++ M+E+G+ Sbjct: 1 MQDRNLIDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKP 60 Query: 72 FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131 KKSARI G+V+GK HPHGD S+Y+++VR+AQ + R+ L+ G GNFG++DGD AAA RY Sbjct: 61 HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRY 120 Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191 TEARM+++A +L+ ++++ V+F+D Y+ + EPVV P++FPNLL NG +GIAVGMAT+I Sbjct: 121 TEARMSKIALELLRDINKNTVNFQDNYDGSEREPVVLPARFPNLLVNGATGIAVGMATNI 180 Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251 P HN+ E +A ++++P+ + +L+E I GPDFPTG +++ R I +Y G+G Sbjct: 181 PPHNLAESIDAVKMVMEHPDCTTRELMEVIPGPDFPTGALVM-GRSGIHRAYDTGKGSIV 239 Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVR 310 +R+R +E G IVVTE PY V K+++ E I L KR+ + +RDES+ E VR Sbjct: 240 LRSRTEIETTQTGRERIVVTEFPYGVNKTKVHEHIVRLAQEKRLEGITAVRDESSREGVR 299 Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370 V+ + R +++ ++F L+ ++T F NM + G VP+++ L I+ +++H++E Sbjct: 300 FVIEIR-REASATVILNNLFKLTSLQTNFSFNMLAIENG-VPKILSLRQIIDNYISHQKE 357 Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQ 427 V+ RR+ F + R IL+GLLIA ++DE+IAIIRN + + ++SRF L+E Q Sbjct: 358 VIIRRTRFDKDKAEARAHILEGLLIALDHLDEVIAIIRNSETDVIAQTELMSRFDLSERQ 417 Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487 AIL++RLR L LE +I+SE D+LLA + +L ++ I E+ E+K ++ Sbjct: 418 SQAILDMRLRRLTGLERDKIQSEYDDLLALIADLSDILAKPERIITIIKEEMDEIKRKYA 477 Query: 488 KSTDLGRRRTTFC--EVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHS 537 RRT EV + + +IE+E + + +SN+G+I+ L K Sbjct: 478 NP-----RRTELMVGEVL----SLEDEDLIEEEDVLITLSNKGYIKRLAQDEFRAQKRGG 528 Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPA 577 + D ++ + T D +L + G+ Y L A Sbjct: 529 RGVQGTGVNNDDFVRELISTSTHDTLLFFTNFGRVYRLKA 568 >gi|313884304|ref|ZP_07818067.1| DNA gyrase, A subunit [Eremococcus coleocola ACS-139-V-Col8] gi|312620457|gb|EFR31883.1| DNA gyrase, A subunit [Eremococcus coleocola ACS-139-V-Col8] Length = 852 Score = 393 bits (1010), Expect = e-107, Method: Compositional matrix adjust. Identities = 237/680 (34%), Positives = 395/680 (58%), Gaps = 45/680 (6%) Query: 13 VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72 ++ + + VSL + +L YA+S I RA+PD+RDG KPV RRI++ M+E+G+ Sbjct: 8 IDRDYETVSLPDEMRNSFLDYAMSVIVARALPDVRDGLKPVQRRILYGMNEIGVTPDKPH 67 Query: 73 KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132 KKSARIVG+V+GK HPHGD ++Y+++VR+AQPF R L+ G GNFG++DGD AAA RYT Sbjct: 68 KKSARIVGDVMGKYHPHGDSAIYEAMVRMAQPFSYRELLVDGHGNFGSVDGDGAAAMRYT 127 Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192 EARM++++ +L+ +++D +DF+D Y++E+ EPVV P++FPNLL NG SGIAVGMAT+IP Sbjct: 128 EARMSKISVEMLRDINKDTIDFQDNYSQEEKEPVVLPARFPNLLVNGASGIAVGMATNIP 187 Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252 HN+ E+ +A L+ NP++++++L+E + GPDFPTG +++ + I +Y+ GRG V Sbjct: 188 PHNLGEVIDALDLLMKNPDVTVDELMEVLPGPDFPTGALVM-GKSGIRRAYQTGRGKILV 246 Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRI 311 R++ +E++ IVVTEIPY V K+ L+++IA+L KRI + DES E +RI Sbjct: 247 RSKVDIEQLANDRERIVVTEIPYGVNKANLVKRIADLARDKRIEGITYANDESGREGMRI 306 Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371 V+ + R +++ +++ + M+ F NM + G VP+++ L IL ++L H+ EV Sbjct: 307 VIEVR-RDTSASVVLNNLYKYTPMQVSFGFNMLAIDKG-VPKILNLKEILSKYLDHQVEV 364 Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQV 428 + RR+ + + + R IL+GL IA +IDEII IIR+ D K +++R+ L++ Q Sbjct: 365 IRRRTEYDKRKAENRAHILEGLRIALDHIDEIIHIIRSSQDGDIAKQELMNRYELSDVQA 424 Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488 AIL++RL L LE +I+ E +LL +++ +L S ++ + I E+ E++ F Sbjct: 425 QAILDMRLVRLTGLERDKIEKEYADLLDLIQRLTEILGSQERIFQIIEDELNEIRTRFG- 483 Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS------- 541 D R E++ + +++IE+E + + ++N+G+I+ + + Sbjct: 484 --DARRTELHIGEITDIE----DESLIEEEDVLIALTNKGYIKRMTQDEFSVQNRGGRGV 537 Query: 542 -ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLLSGRG 585 + +GD ++ + T D +L + GK Y LP NL+ Sbjct: 538 KGMGLGDGDHIQTLVSCSTHDTLLFFTNQGKVYEKRGFEIPEYGRTAKGLPIINLIK-ID 596 Query: 586 HGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS 645 GE ++ +I ++ +QD D L V+ G SE G L + Sbjct: 597 KGEEVKAMISIS-DQDT------DHEKYLFFVTKTGTVKRTLSSEYYNIRNNGLIALNLK 649 Query: 646 SEEKMKLVVKVTGDHVAVVG 665 ++ + V++ G+ ++G Sbjct: 650 EDDSLVAVMETDGNKPIIIG 669 >gi|182412482|ref|YP_001817548.1| DNA gyrase, A subunit [Opitutus terrae PB90-1] gi|177839696|gb|ACB73948.1| DNA gyrase, A subunit [Opitutus terrae PB90-1] Length = 830 Score = 393 bits (1010), Expect = e-107, Method: Compositional matrix adjust. Identities = 236/604 (39%), Positives = 354/604 (58%), Gaps = 30/604 (4%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 E + + ++ ++ Y+ Y++S I RA+PD RDG KPV RR+++AM GL AF K Sbjct: 6 EKLSSANITDIMQTAYIDYSMSVIISRALPDARDGLKPVQRRVLYAMLREGLLHNRAFDK 65 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 A +VGEV+ HPHGD SVYD+LVR+AQP+V RYPLI QGNFG++DGD AAAYRYTE Sbjct: 66 CAGVVGEVLKNYHPHGDSSVYDTLVRMAQPWVMRYPLIDPQGNFGSVDGDPAAAYRYTEC 125 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 R+ +AE +L+ ++ED VDF Y E +EP V P+ PNLL NG++GIAVGM T+IP H Sbjct: 126 RLNAIAEDLLRDIEEDTVDFAPNYKESTTEPTVLPAALPNLLMNGSTGIAVGMTTNIPPH 185 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 N+ EI +A A+IDNP IS+++L + GPDFPTGG+I RE I+ + G+G R R Sbjct: 186 NLAEIIDATCAIIDNPRISVDELCTIVQGPDFPTGGVIA-GREGILSYLKTGKGIVRTRG 244 Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314 + EE+ G IVVTEIPY V ++ L+ +IAEL+ K+I + D+RDES E+ RIV+ Sbjct: 245 KAHTEEMKGGMEQIVVTEIPYNVNRATLVTRIAELVGDKQIDGIRDLRDESDENTRIVIE 304 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K R +++ +F + +E+ F + + L R P+ M + +++ ++ HRREV+ R Sbjct: 305 LK-RGEQSKVVINQLFQKTALESSFGVTLLALDKKR-PKQMNIKELIECYIEHRREVVTR 362 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAI 431 R+ FR++ + R IL+G +IA N+D+ + IIR N ++ K +++++ L+E Q DAI Sbjct: 363 RTRFRLKQAEDRAHILEGYIIALDNLDDFVKIIRASQNREEAKVRLMAKYPLSERQTDAI 422 Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491 L LRL L LE +I++E L+ E++ +L S + I E+ E+KE ++ Sbjct: 423 LELRLYQLTGLERGKIEAEYLELMKLIEELRGILESEPKLLALIKKELAEMKEKYTSP-- 480 Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSAL 543 RRT E+ A + +I E + +S+ G+I RS + + Sbjct: 481 ---RRT---EIIAAAGEFRMEDVIPNEGCVITVSHLGFIKRTPVAEYRSQRRGGKGVIGA 534 Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDLNH 598 E D + A T D IL ++ G K Y +P G S G+++ + L Sbjct: 535 ETYEEDFVANLFTASTHDYILFFTSIGQCHAKKVYDIPEGTRAS---KGKSVSSFLRLAE 591 Query: 599 NQDI 602 + I Sbjct: 592 GEKI 595 >gi|260220859|emb|CBA28847.1| DNA gyrase subunit A [Curvibacter putative symbiont of Hydra magnipapillata] Length = 894 Score = 393 bits (1009), Expect = e-107, Method: Compositional matrix adjust. Identities = 235/611 (38%), Positives = 350/611 (57%), Gaps = 62/611 (10%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 +SL + YL YA+S I RA+PD RDG KPVHRR+++AM E+ D+ A+KKSARIV Sbjct: 11 ISLEEEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMHELNNDWNRAYKKSARIV 70 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGDQSVYD++VR+AQ F R+ L+ GQGNFG++DGDSAAA RYTE R+ ++ Sbjct: 71 GDVIGKYHPHGDQSVYDTIVRMAQDFSMRHMLVDGQGNFGSVDGDSAAAMRYTEIRLAKI 130 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A +L +D++ VDF Y+ +SEP+V P++ PNLL NG+ GIAVGMAT+IP HN+ E+ Sbjct: 131 AHELLADLDKETVDFGPNYDGSESEPLVMPTRIPNLLVNGSGGIAVGMATNIPPHNLNEV 190 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 +A L L+ NPE SI++L++ I PDFPT GII + + + YR GRG +RAR E Sbjct: 191 VDACLHLLKNPEASIDELMDIIPAPDFPTAGIIY-GIQGVKDGYRTGRGRVVMRARCHFE 249 Query: 260 EVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318 ++ +G I+V E+PYQV K L E++AEL+ K+I + I+DES + ++ R Sbjct: 250 DIDKGQRQAIIVDELPYQVNKKTLQERMAELVHEKKIEGISHIQDESDKSGMRLVIELKR 309 Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378 P++++ +++ + ++ F +NM L G+ P++ L +++ +L HRREV+ RR+ F Sbjct: 310 GEVPEVVLNNLYKQTQLQDTFGINMVALVNGQ-PKLCNLKDLIEVFLNHRREVVTRRTVF 368 Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV-----------------MVSR- 420 ++ R +L+GL +A NID+ I IIR P PV M++R Sbjct: 369 NLRKARERGHVLEGLAVALANIDDFIRIIRESPTP-PVAKTELMNRPWDSKLVREMLTRT 427 Query: 421 ----------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELD 452 + L+E Q IL +RL+ L LE+ +I +E Sbjct: 428 RADGGVVNADDYRPEGLEKEFGMGNDGLYRLSETQAQEILQMRLQRLTGLEQDKIVAEYK 487 Query: 453 NLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ 512 +++AE E + +L + I E+ VK+ F + T +G RR + E S D +T + Sbjct: 488 DVMAEIEDLLDILAKPARVAVIIGEELGHVKQEFGQ-TKIGARR-SLVEHSSFDLST--E 543 Query: 513 AMIEKEPITVVISNRGWIRSLKSHSVDL--------SALHFKEGDSLKIALHAHTTDRIL 564 +I + V +S+ G+I+S H A KE D + A+T D IL Sbjct: 544 DLITPTDMVVTMSHSGYIKSQPLHEYRAQKRGGRGKQATATKEDDWVDQLFVANTHDYIL 603 Query: 565 LLSTDGKAYTL 575 S G+ Y L Sbjct: 604 CFSNRGRLYWL 614 >gi|239624128|ref|ZP_04667159.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239520514|gb|EEQ60380.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 853 Score = 393 bits (1009), Expect = e-107, Method: Compositional matrix adjust. Identities = 233/629 (37%), Positives = 366/629 (58%), Gaps = 34/629 (5%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 + V V L+ +E+ Y+ YA+S I RA+PD+RDG KPV RR++++M E+ +K Sbjct: 7 DKVHDVDLKKTMEQSYIDYAMSVISARALPDVRDGLKPVQRRVLYSMIELNNGPDKPHRK 66 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 ARIVG+ +GK HPHGD S+Y +LV +AQ + RYPL+ G GNFG++DGD AAA RYTEA Sbjct: 67 CARIVGDTMGKYHPHGDSSIYGALVNMAQEWSTRYPLVDGHGNFGSVDGDGAAAMRYTEA 126 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 R+++++ +L + +D VDF ++E + EPVV PS++PNLL NGTSGIAVGMAT+IP H Sbjct: 127 RLSKISMEMLADIGKDTVDFVPNFDETEKEPVVLPSRYPNLLVNGTSGIAVGMATNIPPH 186 Query: 195 NVQEICEAALALIDNP-----EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249 N++EI A + +IDN E S+E+++E + GPDFPTG I+ R SI E+YR GR Sbjct: 187 NLREIISAVVKMIDNQVEEDRETSLEEIMEIVKGPDFPTGATIL-GRRSIEEAYRTGRAK 245 Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309 +VRA +E + G I+VTE+PY V K+RLIEKIA+L+ K+I + I DES + Sbjct: 246 IKVRAVTNIETMANGKSRIIVTELPYMVNKARLIEKIADLVKEKKIDGITYIGDESNREG 305 Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369 + R ++ ++++ + + ++ F + M L + P+V+ L +L E+L H+ Sbjct: 306 MRINIELRRDVNANVILNQLLKHTQLQDTFGVIMLAL-IDNQPKVLNLHQMLDEYLKHQE 364 Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTEN 426 EV+ RR+ + + + R ILKGLLIA +IDE+I IIR N K ++ RF L++ Sbjct: 365 EVVRRRTQYDLNKAEERAHILKGLLIALDHIDEVIRIIRGSSNVADAKNQLMERFGLSDA 424 Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486 Q AI+++RLR+L LE ++++E LLA+ E++ ++L K+ I EI+ + + + Sbjct: 425 QSQAIVDMRLRALTGLEREKLENEYKELLAKIEELQAILADVKKLLTVIKEEIQIIADKY 484 Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSV 538 RRT + D +++ +I E + +++ G+I RS Sbjct: 485 GDD-----RRTA---IGYDDDVSMED-LIPDEDTVIAMTHLGYIKRMDVDNFRSQNRGGK 535 Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL-LSGR-GHGEAIQLLIDL 596 + + E D ++ L ++ + G+ Y L A + +GR G AI L+ L Sbjct: 536 GIKGMQTIEEDYIEDLLMTTNHHFMMFFTNKGRVYRLKAYEIPEAGRTARGTAIINLLQL 595 Query: 597 NHNQDIVTAFV----YDSTCKLLVVSSKG 621 ++ I TA + Y+ L + + G Sbjct: 596 QPDEKI-TAIIPMREYNEDKYLFMATRNG 623 >gi|118594749|ref|ZP_01552096.1| DNA gyrase subunit A [Methylophilales bacterium HTCC2181] gi|118440527|gb|EAV47154.1| DNA gyrase subunit A [Methylophilales bacterium HTCC2181] Length = 855 Score = 393 bits (1009), Expect = e-107, Method: Compositional matrix adjust. Identities = 232/615 (37%), Positives = 360/615 (58%), Gaps = 63/615 (10%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 VSL +++ YL YA+S I RA+PD+RDG KPVHRR+++AM E+ +F +KKSARIV Sbjct: 11 VSLEDEMKKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELSNNFNRPYKKSARIV 70 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGD +VYD++VR+AQ F RY L+ GQGNFG++DGD+AAA RYTE RM+++ Sbjct: 71 GDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMSKI 130 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 + +L +D++ VDF Y+ + EP++ P++ PNLL NG+SGIAVGMAT+ P HN+ E+ Sbjct: 131 SHEMLADIDKETVDFGPNYDGSEHEPLIMPTRIPNLLINGSSGIAVGMATNFPPHNLTEV 190 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 LAL+ PE SI++L+E+I GPDFPT GII + + YR GRG +R + VE Sbjct: 191 INGLLALLQKPETSIDELMEFIPGPDFPTSGII-HGISGVRDGYRTGRGRVVMRGKTHVE 249 Query: 260 EVGRGSW-CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE-DVRIVLFPKN 317 + RG+ I+V E+PYQV K IEKIAEL+ K+I + D+RDES + +R+V+ K Sbjct: 250 SLERGNREAIIVDELPYQVNKKTFIEKIAELVGDKKIEGISDLRDESDKAGMRVVIELKK 309 Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377 + P++++ +++ + ++ F +NM L G+ P+++ L IL +L HRREV+ RR+ Sbjct: 310 GEI-PEVILNNLYKQTQLQDNFGMNMVALIDGQ-PRLLNLREILDAFLKHRREVITRRTV 367 Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP------------------------ 413 + ++ R IL+GL +A N+DE+I II++ P Sbjct: 368 YELKKARERGHILEGLAVALANVDEMIKIIKSAPTPPDAKKELMERSWASDVVSSMLKKS 427 Query: 414 -----KPVMVS--------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEK 460 KP +S + L++ Q IL LRL+ L LE+ +I +E ++ Sbjct: 428 SQDLSKPDGLSVLYGLKEDGYRLSDTQAQEILQLRLQRLTGLEQEKIVTEYHAIMVTIID 487 Query: 461 IDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI 520 + +LN ++ + I+ E+ E++ + RR+ V+ A +++ +I + + Sbjct: 488 LLDILNKSERVTSIISEELTEIRSQYGDD-----RRSEI--VTDAYDLSIED-LIAPQDM 539 Query: 521 TVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-- 570 V +SN G+I R+ K A+ KE D ++ A++ D IL S+ G Sbjct: 540 VVTLSNSGYIKAQVLDDYRAQKRGGRGKQAMGTKEDDFIEQMFVANSHDNILCFSSRGQV 599 Query: 571 ---KAYTLPAGNLLS 582 K Y +P G+ +S Sbjct: 600 YWLKVYEVPQGSRIS 614 >gi|325124861|gb|ADY84191.1| DNA gyrase subunit A [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 823 Score = 393 bits (1009), Expect = e-107, Method: Compositional matrix adjust. Identities = 219/628 (34%), Positives = 370/628 (58%), Gaps = 38/628 (6%) Query: 6 ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65 + N N + ++ V L + +L YA+S I RA+PD+RDG KPV RRI++ M+E+G Sbjct: 1 MDNENQGQDRRIRNVDLTQTMRSSFLDYAMSVIVARALPDVRDGLKPVQRRIMYGMNELG 60 Query: 66 LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125 + +KKSARIVG+V+GK HPHGD S+Y ++ +AQ F RY L+ G GNFG++DGD Sbjct: 61 VTPDKPYKKSARIVGDVMGKYHPHGDSSIYLAMAHMAQDFAYRYMLVDGHGNFGSVDGDR 120 Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185 AA RYTEARM+++A +L+ ++++ VD++ Y++ ++EP V P++ PNLL NG+SGIAV Sbjct: 121 PAAMRYTEARMSKIAVEMLRDINKNTVDWQRNYDDTENEPTVLPARIPNLLVNGSSGIAV 180 Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245 GM T+IP HN+ E+ L+ NP+++ ++L++ I GPDFPTGGI++ R ++ +Y Sbjct: 181 GMTTNIPPHNLSEVISGIHMLMKNPDVTTKELMKAIPGPDFPTGGILM-GRGGVLHAYES 239 Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305 G+G VRA+ +E G I+V+EIPY V K+ L++KIAEL K I + +RDES Sbjct: 240 GKGNIVVRAKTEIETEKSGRERIIVSEIPYLVNKAELVQKIAELARDKVIDGITGVRDES 299 Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365 + + R +++ ++F + M++ F +NM + G P+ + L +L+ +L Sbjct: 300 DQSGMRITIDVRRDASASVVLNNLFKETQMQSNFAMNMVAIVDG-APKFLTLKQMLQYYL 358 Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFS 422 AH+ +V+ RR+ F ++ + R IL+GL +A +IDEI+++IRN D K ++SRF Sbjct: 359 AHQEDVITRRTKFDLEKAEARAHILEGLRVALDHIDEIVSLIRNSESSDIAKAGLISRFD 418 Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482 L + Q AIL++RL L LE +++ E LL + +L ++ I E+ ++ Sbjct: 419 LDDRQAQAILDMRLVRLTGLERDKVEGEYQELLVKIADYKDILAKPERIDQIIYDELLDI 478 Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSL-----KSH 536 ++ F +RRT +++ ++ T++ + +IE++ + + +S++G+++ + K+ Sbjct: 479 QKRFGD-----KRRT---QITASEVVTIEDEDLIEEQDVLLTLSHQGYVKRMLIDDFKTQ 530 Query: 537 S---VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAG 578 + + + ++GD ++ L++ T D + + GK Y LP Sbjct: 531 NRGGRGIKGMGVQKGDFIEHLLYSSTHDYLFFYTNKGKVYMKKAYEIPEYGRSAKGLPIV 590 Query: 579 NLLSGRGHGEAIQLLIDLNHNQDIVTAF 606 NLL GE IQ +++L D AF Sbjct: 591 NLLQ-LDKGEHIQTVVNLPQGHDDDYAF 617 >gi|319936689|ref|ZP_08011102.1| DNA gyrase subunit A gyrA [Coprobacillus sp. 29_1] gi|319808246|gb|EFW04811.1| DNA gyrase subunit A gyrA [Coprobacillus sp. 29_1] Length = 822 Score = 393 bits (1009), Expect = e-107, Method: Compositional matrix adjust. Identities = 242/690 (35%), Positives = 407/690 (58%), Gaps = 41/690 (5%) Query: 26 LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85 +++ +++YA+S I +RA+PD+RDG KPV RRI+H M+E+G +KKSARIVGEV+GK Sbjct: 15 MKKSFISYAMSVIVQRALPDVRDGLKPVQRRIVHGMNELGCYSDKPYKKSARIVGEVMGK 74 Query: 86 LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145 HPHGD S+Y++LVR+AQ F RY ++ G GNFG+IDGD AAA RYTEARM++++ +++ Sbjct: 75 YHPHGDSSIYEALVRMAQDFSYRYMIVDGHGNFGSIDGDGAAAARYTEARMSKISMELVR 134 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 +++D V+F Y+ E++EP V P++FPNLL NGT+GIAVGMAT+IP HN+ E+ +A LA Sbjct: 135 DINKDTVNFIPNYDGEETEPEVLPARFPNLLVNGTTGIAVGMATNIPPHNLGEVIDAILA 194 Query: 206 LIDNPEISIEKLLE-YIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRG 264 + NP+I+I +L+E YI GPDFPTG I+ + +I ++Y G G +RA+ + ++ G Sbjct: 195 VSHNPDITIMELMEDYIQGPDFPTGAYIL-GKSAIKKAYETGNGLIIMRAKTDIIDIHGG 253 Query: 265 SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLFPKNRSLDPD 323 I+V EIPY V K+RLIEK+AE + KRI + +IRDES E +RIV+ + + + P+ Sbjct: 254 KKAIIVNEIPYMVNKARLIEKMAEHVKEKRIEGITEIRDESNREGIRIVIELR-KDVQPE 312 Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383 +++ +F L+ ++T F +N L + PQ + L ++ +L H+ EV+ RR+++ ++ Sbjct: 313 VILNQLFKLTSLQTTFGVNTIAL-VNNEPQTLNLKQMITYYLDHQEEVIKRRTAYDLKKA 371 Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVDAILNLRLRSLR 440 + R IL+GL A ID II +IR + + ++S F ++E Q AI ++L+ L Sbjct: 372 EDRAHILEGLKRALDQIDAIIDLIRTSRTTEIIQQRLMSEFDMSERQAKAIREMQLQRLA 431 Query: 441 KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500 LE +I++EL++LL + +L + ++ I E+ ++K+ F+ +RRT Sbjct: 432 GLEREKIENELNDLLTLIADLKDILENRERILAIIEAELLQLKDKFAD-----KRRT--- 483 Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD--------LSALHFKEGDSLK 552 E+ + + +I E I + ++ G+++ + + + + E D + Sbjct: 484 EIIQGTFDLEDEDLIPVEDIIISLTTNGYVKRMPVDTYKTQNRGGRGIKGMATNEDDIVD 543 Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLS-GR-GHGEAIQLLIDLNHNQDIVTA----- 605 ++ T D +L + GK Y + N+ GR G + L++L+ ++ + + Sbjct: 544 SLINMSTHDDLLFFTNFGKVYRIKGYNVPEFGRTAKGLPVVNLLNLDKDEYVKSMISIRK 603 Query: 606 --FVYDSTCKLLVVSSKGNAFIVEESEI--IANTRK-GKTFLKVSSEEKMKLVVKVTGD- 659 + L V+ G +V+++ I N R+ GK + + ++++ V TG+ Sbjct: 604 EDILEKKAEYLFFVTLNG---LVKKTHIDEFENIRQSGKIAIGLKEDDQLVSVKLTTGNA 660 Query: 660 HVAVVGENRKLLIFSIDQIPEMSR-GKGVR 688 + V N KL+ F + +M R GVR Sbjct: 661 QILVAASNGKLIRFKESDVRKMGRTASGVR 690 >gi|24373958|ref|NP_718001.1| DNA gyrase, A subunit [Shewanella oneidensis MR-1] gi|24348396|gb|AAN55445.1|AE015681_9 DNA gyrase, A subunit [Shewanella oneidensis MR-1] Length = 919 Score = 393 bits (1009), Expect = e-107, Method: Compositional matrix adjust. Identities = 233/605 (38%), Positives = 346/605 (57%), Gaps = 55/605 (9%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 ++ +++ L+ YL YA+S I RA+PD+RDG KPVHRR++ AMSE+ D+ +KKS Sbjct: 7 SISPINIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELKNDWNKPYKKS 66 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 AR+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG++DGDSAAA RYTE R Sbjct: 67 ARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYTLVDGQGNFGSVDGDSAAAMRYTEIR 126 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 M ++A +L ++++ VD+ Y+ + P V P++ PNLL NG+SGIAVGMAT+IP HN Sbjct: 127 MDKLAHQLLADLEKETVDYVPNYDGTEQIPAVLPTRVPNLLINGSSGIAVGMATNIPPHN 186 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 + E+ + LALI +P +SIE+L++YI GPDFPT II R+ I+++Y+ GRG +RA Sbjct: 187 LTEVVKGCLALIADPALSIEQLMDYIPGPDFPTAAII-NGRKGIIDAYKTGRGRAIMRAL 245 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315 VE G I+VTEIPYQV K+RLIEKIAEL+ K++ + +RDES +D ++ Sbjct: 246 AEVETEENGRERIIVTEIPYQVNKARLIEKIAELVKDKKLEGISGLRDESDKDGMRIVIE 305 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 R ++++ +++ + M+ F +NM L+ G+ P++ L +L+ ++ HRREV+ RR Sbjct: 306 IKRGEVGEVVLNNLYAQTQMQCSFGINMVALTNGQ-PKLFNLKEMLECFILHRREVVTRR 364 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV----------------- 418 + F ++ R IL+ L +A NID IIA+I+ P V Sbjct: 365 TVFELRKARERAHILEALAVALANIDPIIALIKASPTPADAKVKLVEQGWALGHVQGMLE 424 Query: 419 --------------------SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458 + LTE Q AIL LRL L LE +I +E + LL Sbjct: 425 KAGDDAARPEWLEPEYGIRDGLYYLTEQQAQAILELRLHRLTGLEHDKIIAEYEELLEFI 484 Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518 + +L S ++ I E+ E+ + G R T + D + + +I +E Sbjct: 485 AGLLFILRSPERLMEVIKEELEEI------LAEYGDARRTVINANEIDMSL--EDLINEE 536 Query: 519 PITVVISNRGWIR--SLKSHSVDLS------ALHFKEGDSLKIALHAHTTDRILLLSTDG 570 + V +S+ G+ + L + A K+ D ++ L A+T D IL S G Sbjct: 537 DVVVTLSHLGYAKYQPLSDYQAQRRGGKGKVATKVKDEDFVEKLLVANTHDTILCFSDFG 596 Query: 571 KAYTL 575 K Y L Sbjct: 597 KMYWL 601 >gi|284165544|ref|YP_003403823.1| DNA gyrase subunit alpha [Haloterrigena turkmenica DSM 5511] gi|284015199|gb|ADB61150.1| DNA gyrase, A subunit [Haloterrigena turkmenica DSM 5511] Length = 838 Score = 393 bits (1009), Expect = e-107, Method: Compositional matrix adjust. Identities = 258/739 (34%), Positives = 414/739 (56%), Gaps = 60/739 (8%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 V+ V + +E+ Y+ YA+S I RA+P + DG KPVHRRI++AM EMG+ G++ +KS+ Sbjct: 16 VENVRIEDEMEQSYIDYAMSVIAGRALPRVEDGLKPVHRRILYAMHEMGVSSGSSHRKSS 75 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 IVGE +G HPHGD ++YD+LVR+AQ F RYPL+ GQGNFG++DGD AAA RYTEARM Sbjct: 76 SIVGETMGDYHPHGDSAIYDTLVRMAQDFSMRYPLVDGQGNFGSMDGDPAAAQRYTEARM 135 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 + ++E +L +D+D VDF Y++ EP V P+ FPNLL NG+SGIAVGM+T+IP HN+ Sbjct: 136 SSISEELLSDIDKDTVDFSANYDDRLQEPDVLPAAFPNLLVNGSSGIAVGMSTNIPPHNL 195 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ +A + LID+P+ ++E L++++ GPDFPTG IV R++I +Y+ GRG RVRA + Sbjct: 196 GEVIDATIELIDDPDATVEDLMDHVKGPDFPTGANIV-GRDAIYSAYKTGRGRIRVRAEF 254 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFP 315 VEE G IVVTE+P+Q K+RL+E+IAE + I + D+RDES D VRIV+ Sbjct: 255 EVEEWKSGRERIVVTELPFQANKARLVERIAEDVNEGEIEGISDLRDESDRDGVRIVIEL 314 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRV---PQVMPLDGILKEWLAHRREVL 372 K R + +++ + +E V+++ V P+V+ L L+E++AHRREV+ Sbjct: 315 K-RGANTEVVKNRL-----LENHLERTFGVINLALVDGQPRVLSLKETLEEYVAHRREVV 368 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVD 429 RRS + ++ + R IL+G L A N D+++ +IRN + K + + +++Q D Sbjct: 369 RRRSEYDLEEAEDRAHILEGRLTAVENADDVVELIRNSETRSDAKENLQDAYDFSQDQAD 428 Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489 I+ ++L SL +E +I+ E + + AE E+++++L S ++ + I E+R +KE + Sbjct: 429 HIVRMQLGSLTSMETTEIEEEYEEVQAEIERLNAILESEEELLSVIKDELRGIKEEYGDE 488 Query: 490 TDLGRRRTTFCEVSRADKATL-QQAMIEKEPITVVISNRGWIRSLKSHSVD--------L 540 RRT+ E D+ T+ + +I +E + VV++ +++ + D + Sbjct: 489 -----RRTSIIE----DQGTVTHEDLIPEEEVFVVMTEDDYVKRMPIDQFDPQGRGGKGI 539 Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNH 598 KEGD + A+T D +L + GK Y L + + G++ ++DL+ Sbjct: 540 IGADVKEGDRVSTVFRANTHDYLLCFTNQGKVYQLKTYEIPEMGRTARGKSAVNILDLDP 599 Query: 599 NQDIVT----------AFVYDSTCKLLVVSSKGNAF--IVEESEIIANTRKGKTFLKVSS 646 +DI FV +T V + G F I I A+ +G + V Sbjct: 600 GEDITAIVDTDAFGDGEFVTMATHHGYVKRTGGEEFDNIRSTGIIAADLEEGDELVDVEV 659 Query: 647 EEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRG----KGVRLQSYKDGGISDVIC 702 + + +V T E + F D++ M R G++LQ D ++ ++ Sbjct: 660 TDGSQDLVIAT--------EGGMTIRFDEDEVRAMGRNARGVNGIKLQD--DDAVAGLVA 709 Query: 703 FKICEGLTWIDSAGRSYNR 721 +G + Y + Sbjct: 710 TDEADGQALLTVTRNGYGK 728 >gi|168035418|ref|XP_001770207.1| predicted protein [Physcomitrella patens subsp. patens] gi|162678584|gb|EDQ65041.1| predicted protein [Physcomitrella patens subsp. patens] Length = 813 Score = 393 bits (1009), Expect = e-107, Method: Compositional matrix adjust. Identities = 225/566 (39%), Positives = 339/566 (59%), Gaps = 25/566 (4%) Query: 27 EERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKL 86 EE Y+AYA+S I RA+PD RDG KPVHRRI++AM E+GL FKK AR+VGEV+GK Sbjct: 40 EESYIAYAMSVIVGRALPDCRDGLKPVHRRILYAMHELGLSSKKPFKKCARVVGEVLGKF 99 Query: 87 HPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE-LILQ 145 HPHGD +VYD+LVR+AQ F R PL++G GNFG++DGD AAA RYTE R+ ++E ++L Sbjct: 100 HPHGDTAVYDALVRMAQDFSLRSPLVNGHGNFGSLDGDPAAAMRYTECRLQGLSEAMLLA 159 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 ++ D VDF T++ +EP V P++ PN+L NG SGIAVGMAT+IP HN+ E+ +A +A Sbjct: 160 DLELDTVDFIPTFDGSQNEPAVLPARLPNVLLNGASGIAVGMATNIPPHNLAEVVDALIA 219 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265 L+ NP ++E+L+E++ GPDFPTGG I+ + + I+++YR G G VR + +E++ R S Sbjct: 220 LLHNPNATVEELMEHLPGPDFPTGGQILGT-DGILDAYRFGHGRLTVRGKASIEQLDRRS 278 Query: 266 --WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE-DVRIVLFPKNRSLDP 322 ++++E+PYQ K+ L+EKIA+L+ K + + DIRDES +RIV+ K R P Sbjct: 279 NRSAVIISELPYQANKAALVEKIADLVNNKTLEGVSDIRDESDRFGMRIVIEVK-RGAMP 337 Query: 323 DLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQA 382 +++ +++ + ++TRF NM V +G P+VM L L+ ++ R V+ RR+ F+++ Sbjct: 338 KVVLNNLYKYTTLQTRFSCNM-VGIIGGEPKVMGLKDFLETFVEFRCSVIERRAKFQLKR 396 Query: 383 IDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVDAILNLRLRSL 439 + R I++G+LI N+D ++ IIR+ + F++T Q DA+L + LR L Sbjct: 397 AEDRDHIVEGILIGLSNLDGVVKIIRSAKDTAQASEGLQKGFNVTPAQADALLAMPLRRL 456 Query: 440 RKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTF 499 LE ++K E D L AE + LL S K + QI KE + G R T Sbjct: 457 TSLESGKLKEEHDALTAEITDLKQLLES-KHRVLQII-----EKEALVLKKEYGTPRRTL 510 Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL--------SALHFKEGDSL 551 E R D +I E V +S +G+I+ + + + S + D++ Sbjct: 511 VEQGR-DGEINDIDVIANEETIVTLSEKGYIKRMAAGTFTAQNRGTTGKSGGKMRSNDAM 569 Query: 552 KIALHAHTTDRILLLSTDGKAYTLPA 577 T D +L S G Y++ A Sbjct: 570 SDFFVCRTHDYVLFFSERGIVYSIRA 595 >gi|300777850|ref|ZP_07087708.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Chryseobacterium gleum ATCC 35910] gi|300503360|gb|EFK34500.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Chryseobacterium gleum ATCC 35910] Length = 865 Score = 393 bits (1009), Expect = e-107, Method: Compositional matrix adjust. Identities = 240/704 (34%), Positives = 408/704 (57%), Gaps = 53/704 (7%) Query: 26 LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85 ++ Y+ Y++S I RA+PD+RDG KPVHRR+++ M +G+ + KSARIVG+V+GK Sbjct: 17 MKSSYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMYGLGVFSNRKYLKSARIVGDVLGK 76 Query: 86 LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145 HPHGD SVYD++VR+AQ + RYP + GQGNFG++DGD AA RYTEAR+ ++++ +L Sbjct: 77 YHPHGDSSVYDAMVRMAQDWSLRYPQVDGQGNFGSMDGDPPAAMRYTEARLKKISDEVLS 136 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 +D++ VDF++ +++ EP V P+K PNLL NGTSGIAVGMAT++ HN+ E +A A Sbjct: 137 DLDKETVDFQNNFDDSLQEPTVMPTKIPNLLVNGTSGIAVGMATNMAPHNLSESVDAICA 196 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265 IDN EI+I++L+++II PDFPTGGII + + +++ GRG +RA+ +E+G + Sbjct: 197 YIDNKEITIDELMQHIIAPDFPTGGIIY-GYDGVRDAFHTGRGRVVLRAKVNFDEIGNRN 255 Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFPKNRSLDPDL 324 I+VTEIPYQV K+ +I + AEL+ ++IP + +IRDES + +RIV KN ++ P++ Sbjct: 256 -AIIVTEIPYQVNKAEMIARTAELVKDEKIPGIHEIRDESDRKGLRIVYELKNDAI-PNV 313 Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384 ++ ++ + ++T F +N L GR P+ + L I+ ++ HR EV+ RR+ F ++ Sbjct: 314 VLNLLYKYTALQTSFSVNNIALVHGR-PEQLNLKDIIHHFVEHRHEVIVRRTQFELKKAK 372 Query: 385 RRVEILKGLLIAYLN---IDEIIAIIRNEDKPKPV---MVSRFSLTENQVDAILNLRLRS 438 R IL+G + +D I+IIR+ P+ ++ F L++ Q AIL+LRL Sbjct: 373 ERAHILEGFMKVIGTQDALDRAISIIRHSANPQAAKEGLIEAFELSDIQAQAILDLRLAR 432 Query: 439 LRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTT 498 L +E +I+ E D ++ E ++ +L + +++ I E+ E+KE + G R T Sbjct: 433 LTGMELDKIRDEYDAIMKEIANLEDILANEPRRFQIIKEELLEIKEKY------GDERRT 486 Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSVDL------SALHFKEGDS 550 + S + + + +I E + + IS+ G+I+ SL + + A ++ D Sbjct: 487 EIDYSGGEMSI--EDIIPNESVVLTISHAGYIKRTSLSEYKIQSRGGVGNKAATTRDSDF 544 Query: 551 LKIALHAHTTDRILLLSTDGKAYTL-----PAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605 L+ + A +L + G+ Y L P G S G A+Q LI++ + D + A Sbjct: 545 LEYIVSATNHQYMLFFTEKGRCYWLRVFEIPEG---SKTAKGRAVQNLINIEPD-DKIKA 600 Query: 606 FV---------YDSTCKLLVVSSKGNAFIVEESEIIANTR---KGKTFLKVSSEEKMKLV 653 ++ Y + +++V+ G ++++ + A +R G +++ +++ Sbjct: 601 YIRTNNLKDSEYVNQMSVVMVTKNGT---IKKTSLEAYSRPRVNGVNAIEIRDNDQLLGA 657 Query: 654 VKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDG 695 G+ + + +N K + F +++ E+ RG GVR +DG Sbjct: 658 YLTNGNSQIMIATKNGKCIRFPEEKVREVGRGSIGVRGILLEDG 701 >gi|89054985|ref|YP_510436.1| DNA gyrase subunit A [Jannaschia sp. CCS1] gi|88864534|gb|ABD55411.1| DNA gyrase A subunit [Jannaschia sp. CCS1] Length = 919 Score = 393 bits (1009), Expect = e-107, Method: Compositional matrix adjust. Identities = 230/603 (38%), Positives = 344/603 (57%), Gaps = 49/603 (8%) Query: 19 AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78 ++ + ++ +L YA+S I RAIPDLRDG KPVHRRI+ AM E G +++KSAR Sbjct: 25 SIDISAEMKTSFLDYAMSVIISRAIPDLRDGLKPVHRRILFAMHETGNTHEKSYRKSARP 84 Query: 79 VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138 VG+V+G+ HPHGD ++YD+LVR+AQ F PL+ GQGNFG++DGD+ AA RYTE RM Sbjct: 85 VGDVMGQYHPHGDSAIYDALVRMAQDFSMSLPLLDGQGNFGSMDGDNPAAMRYTEVRMDA 144 Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198 A +L+ +D+D VDF+D Y+ + EP V P++FPN+L NG GIAVGMAT+IP HN+ E Sbjct: 145 PAAYLLEDIDKDTVDFQDNYDGKQQEPSVLPARFPNMLVNGAGGIAVGMATNIPPHNLGE 204 Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258 + +A ALI+ P++S E+L+EY+ PDFPTGGII+ R ++Y GRG +RA+ Sbjct: 205 VIDACQALIEKPDLSSEELIEYVPAPDFPTGGIIL-GRSGAQKAYIEGRGSVIIRAKTRT 263 Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE-DVRIVLFPKN 317 EE+ + + IV+ EIPYQV K+ +IE+IAEL+ K+I + + DES VR+V+ K Sbjct: 264 EEIRKDRFAIVIDEIPYQVNKASMIERIAELVRDKKIDGISGVADESDRIGVRVVVELK- 322 Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377 R P++++ +F + M+T F NM L+ G+ P+ + L G L +L R EV+ RR++ Sbjct: 323 RDATPEVVLNQLFRFTQMQTSFGCNMLALNGGK-PEQLTLRGFLTSFLDFREEVVARRTA 381 Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE--------------------------- 410 F ++ R +L GL +A N+DE++A IR Sbjct: 382 FELRKARDRAHVLCGLAVAVSNVDEVVATIRASADAPAARAALMTRAWPAEEILPFIKLI 441 Query: 411 DKPKPVMV--SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSG 468 D P V ++L+E Q AIL LRL+ L +L ++ EL+ L + + ++L S Sbjct: 442 DDPTHVANEDGTYNLSETQARAILELRLQRLTQLGVKEVTDELEELAGKIKDYLAILASR 501 Query: 469 KQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRG 528 ++ I+ E+ EV+ F+ RRT E S + +IE+ + V I+ G Sbjct: 502 ERILEIISNELAEVRAKFAVD-----RRTEIVEWS---GDMDDEDLIERSDMVVTITQGG 553 Query: 529 WI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL 580 +I R+ K ++ K+ D + A+T +L +T G Y L L Sbjct: 554 YIKRTPLADFRAQKRGGKGVAGGSMKDDDVVTSMFVANTHTPLLFFTTGGMVYKLKTWRL 613 Query: 581 LSG 583 SG Sbjct: 614 PSG 616 >gi|119510770|ref|ZP_01629896.1| DNA gyrase subunit A [Nodularia spumigena CCY9414] gi|119464533|gb|EAW45444.1| DNA gyrase subunit A [Nodularia spumigena CCY9414] Length = 864 Score = 393 bits (1009), Expect = e-107, Method: Compositional matrix adjust. Identities = 255/700 (36%), Positives = 396/700 (56%), Gaps = 45/700 (6%) Query: 26 LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85 + + YL YA+S I RA+PD RDG KPVHRRI++AM E+GL F+K AR+VGEV+GK Sbjct: 1 MSQSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMHELGLMHDRPFRKCARVVGEVLGK 60 Query: 86 LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAEL-IL 144 HPHGD +VYD+LVR+AQ F R PLI+G GNFG++D D AA RYTE R+ + L +L Sbjct: 61 YHPHGDTAVYDALVRMAQDFSMRSPLINGHGNFGSVDNDPPAAMRYTECRLQALTNLSLL 120 Query: 145 QGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAAL 204 Q ++ + VDF D ++ EP V PS+ P LL NG+SGIAVGMAT+IP HN+ E+ + + Sbjct: 121 QDIESETVDFIDNFDGSQQEPTVLPSRIPQLLLNGSSGIAVGMATNIPPHNLGELIDGLV 180 Query: 205 ALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEV-GR 263 ALI NPEI+ +L++YI GPDFPTG ++ + I E+Y GRG +R +E V R Sbjct: 181 ALIHNPEITDLELMDYIHGPDFPTGAQVLGT-SGIREAYTTGRGSITMRGVATIETVQQR 239 Query: 264 GSW---CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKNRS 319 G I++TE+PYQ K+ LIEKIA+++ KR+ + DIRDES D +RIV+ K S Sbjct: 240 GRQDREAIIITELPYQTNKAALIEKIADMVNEKRLEGIADIRDESDRDGMRIVIELKRDS 299 Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379 P +++ +++ + ++ F NM L G+ P+++ L L+ +L R E + RR+ + Sbjct: 300 Y-PRVVLNNLYKQTPLQANFGANMLALVNGK-PEILNLKKFLEVFLDFRIESITRRTRYE 357 Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAIIRNE-DKP--KPVMVSRFSLTENQVDAILNLRL 436 ++ + R +L+GLLIA +DEII +IR+ D P K +++ + L+E Q DAIL ++L Sbjct: 358 LRKAEARDHLLQGLLIALSQLDEIIVLIRHAPDAPTAKGELITNYGLSEVQADAILQMQL 417 Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496 R L LE +I+ E ++L + + +L ++ I EI ++KE FS RR Sbjct: 418 RRLTALEADKIRQEHEDLQTQIADLQDILARRERILEIIETEIAQLKESFSTP-----RR 472 Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL--------SALHFKEG 548 T + ++ +I E ++++ +G+I+ + ++ + +A K+ Sbjct: 473 TVILP---GEGEIDERDLIANEKAIILVTEQGYIKRMPVNTFEAQSRATRGKAAAKVKDD 529 Query: 549 DSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIV 603 D+++ L D IL S G KAY +P + S G AI ++ + + I Sbjct: 530 DTIEHFLTCCDHDSILFFSDRGVVYCLKAYQIPVSSRTS---RGTAIVQMLPIPREEKIT 586 Query: 604 TAFVYD--STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE--KMKLVVKVTGD 659 + D S + LV+ +KG E +N R + +S EE +++ V + + Sbjct: 587 SIVPVDEFSREEYLVMLTKGGNIKKTELASFSNIR-ANGLIAISLEEGDQLRWVRRARVE 645 Query: 660 HVAVVGENRKLLIF---SIDQIPEMSRG-KGVRLQSYKDG 695 +VG + I + +Q+ +SR +GVR K G Sbjct: 646 DSILVGSRLGMAIHFRCTHEQLRPLSRATRGVRAMKLKKG 685 >gi|302669380|ref|YP_003829340.1| DNA gyrase subunit A GyrA [Butyrivibrio proteoclasticus B316] gi|302393853|gb|ADL32758.1| DNA gyrase subunit A GyrA [Butyrivibrio proteoclasticus B316] Length = 860 Score = 393 bits (1009), Expect = e-107, Method: Compositional matrix adjust. Identities = 250/706 (35%), Positives = 404/706 (57%), Gaps = 50/706 (7%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 + +K V L+ +E Y+ YA+S I RA+PD+RDG KPV RRI+++M E+ +K Sbjct: 22 DRIKEVDLQKTMESDYIDYAMSVIASRALPDVRDGLKPVQRRILYSMIELNNGPDKPHRK 81 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 ARIVG+ +GK HPHGD S+Y +LV +AQP+ RY L+ G GNFG++DGD AAA RYTEA Sbjct: 82 CARIVGDTMGKYHPHGDSSIYGALVNMAQPWSMRYCLVDGHGNFGSVDGDGAAAMRYTEA 141 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 R+T+++ ++ +++D VDF ++E + EP + PS++PNLL NGT+GIAVGMAT+IP H Sbjct: 142 RLTKISMEMIADINKDTVDFVPNFDETEKEPAILPSRYPNLLVNGTTGIAVGMATNIPPH 201 Query: 195 NVQEICEAALALIDN-----PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249 N++E+ A + +IDN E IE++L+ I PDFPTGGII+ +R + E+YR GRG Sbjct: 202 NLREVVNAVVKMIDNRVLEDRETEIEEILDIIKAPDFPTGGIILGTRGA-EEAYRTGRGK 260 Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-ED 308 VRA +E + G IVVTE+PY V K+ +I KIAEL+ K++ + +RDES E Sbjct: 261 VIVRAVTNIEPMQNGKNRIVVTELPYLVNKANMIAKIAELVKLKKLDGITALRDESDREG 320 Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368 +R+V+ +N ++P++++ ++ + M+ F + M L + P+V+ + +LK ++ H+ Sbjct: 321 MRVVIELRN-DVNPNIMLNKLYKHTQMQDSFGIIMLAL-VNNEPKVLSITEMLKHYIKHQ 378 Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTE 425 EV+ RR+ + + + R IL+GLLIA NIDE+I IIR + K ++ RF LT+ Sbjct: 379 EEVVTRRTKYDLNKAEERNHILEGLLIALDNIDEVIKIIRGSETVALAKEQLMGRFGLTD 438 Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485 Q AI+++RLR+L LE +++ E +LL + E++ ++L K I EI E+ Sbjct: 439 VQAQAIVDMRLRTLTGLERDKLEQEHADLLKKIEELKAILADRKVLLGVIRTEISEIANK 498 Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD------ 539 + G R + ++ + D + +I + +++ G+I+ + S+D Sbjct: 499 Y------GDDRKS--QIGQDDSDIDTEDLIPNVNTVIAMTSLGYIKRM---SIDNFKAQN 547 Query: 540 -----LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQL 592 + + + D ++ L T + ++ + G+ Y L A + S G AI Sbjct: 548 RGGKGIKGITTIDNDYVEDILMTTTHNYVMFFTNTGRVYRLKAYQIPEASRTSRGMAIVN 607 Query: 593 LIDLNHNQDI-----VTAFVYDSTCKLLVVSSKGNAFIVEESEI--IANTRK-GKTFLKV 644 L+ L + I V F + C L +V+ KG V+++ I +N RK G + + Sbjct: 608 LLQLAPGEKISAMIPVKGFEDEEKC-LFMVTKKGT---VKKTPITDFSNVRKTGLAAITL 663 Query: 645 SSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GVR 688 ++++ V VT D V +V +N + F + SR GVR Sbjct: 664 RDDDELIEVKTVTKDAEVFLVTKNGMCIHFDESDVRITSRSSIGVR 709 >gi|42525811|ref|NP_970909.1| DNA gyrase, A subunit [Treponema denticola ATCC 35405] gi|41815861|gb|AAS10790.1| DNA gyrase, A subunit [Treponema denticola ATCC 35405] Length = 815 Score = 393 bits (1009), Expect = e-107, Method: Compositional matrix adjust. Identities = 229/621 (36%), Positives = 367/621 (59%), Gaps = 50/621 (8%) Query: 30 YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89 Y+ Y++S I RA+PD+RDG KPVHRRI+++M E GL +K A+IVG+V+G HPH Sbjct: 25 YIDYSMSVIVSRALPDVRDGLKPVHRRILYSMEEKGLRSSGPTRKCAKIVGDVLGSYHPH 84 Query: 90 GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDE 149 GD SVYD+LVRL Q F RYP+I QGNFG I GD AAYRYTEA+M ++AE +++ + + Sbjct: 85 GDASVYDALVRLGQDFSLRYPVIYPQGNFGTIGGDPPAAYRYTEAKMAKIAETMVEDIKK 144 Query: 150 DAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDN 209 + VDF +++ EP V P+KFP LLANG+SGIAVGMAT++P HN++EI +A A IDN Sbjct: 145 ETVDFIPNFDDSTKEPTVLPAKFPFLLANGSSGIAVGMATNMPPHNLREIADAVSAYIDN 204 Query: 210 PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIV 269 PEI I++L +Y+ GPDFPTGG+I R+ I ++++ GRG VR ++ +E +G IV Sbjct: 205 PEIEIDELCKYMKGPDFPTGGVIY-GRKGIKQAFKTGRGKILVRGKFTIEVDKKGKETIV 263 Query: 270 VTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE--DVRIVLFPKNRSLDPDLLME 327 TE+PYQV + L+ +I EL K I + ++ DE+++ +R+V+ K R +++ Sbjct: 264 FTEVPYQVNTTTLVSRIGELAREKIIDGIANVNDETSDRTGLRVVIELK-RGAITKVVLN 322 Query: 328 SIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRV 387 +F + +++ F + L GR P+ + L ++K ++ HR +V+ RR+ F ++ + R Sbjct: 323 QLFAKTALQSSFGVINLALVNGR-PETLNLKLLVKYFVEHRVDVVTRRTKFDLRKAEERA 381 Query: 388 EILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVDAILNLRLRSLRKLEE 444 IL+ L++A NIDE+I IIR+ P+ ++ RF + Q AI++++L+ L LE Sbjct: 382 HILEALIVAIDNIDEVIKIIRSSRDPQTAKNNLMERFGFDDVQAQAIVDMQLKRLTSLEI 441 Query: 445 YQIKSELD----------NLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494 ++ EL +LLA EKI +L+ K++ N+IA + G Sbjct: 442 EDLRKELQELQVLIAHLKDLLAHPEKILALI---KEETNEIAEK-------------FGD 485 Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD--------LSALHFK 546 R T ++ ++ +I+KE + ++IS+ G+I+ + + + ++++ Sbjct: 486 ERKTDIVADEVEELNIED-LIKKEEMVILISHLGYIKRIPATAYKSQNRGGKGSNSVNLA 544 Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVT 604 E D L A T D I+ ++ GKAY L + S G I+ L+ ++ +++I T Sbjct: 545 EDDFLDQIFTASTHDYIMFITNAGKAYWLKVHEIQEASRTSRGSHIKSLLSVSSDEEI-T 603 Query: 605 AFV----YDSTCKLLVVSSKG 621 A V +D LL+ ++ G Sbjct: 604 AVVSLKEFDDKTYLLMATAGG 624 >gi|163853963|ref|YP_001642006.1| DNA gyrase, A subunit [Methylobacterium extorquens PA1] gi|218532904|ref|YP_002423720.1| DNA gyrase subunit alpha [Methylobacterium chloromethanicum CM4] gi|240141417|ref|YP_002965897.1| DNA gyrase, subunit A (type II topoisomerase) [Methylobacterium extorquens AM1] gi|254563932|ref|YP_003071027.1| DNA gyrase subunit A [Methylobacterium extorquens DM4] gi|163665568|gb|ABY32935.1| DNA gyrase, A subunit [Methylobacterium extorquens PA1] gi|218525207|gb|ACK85792.1| DNA gyrase, A subunit [Methylobacterium chloromethanicum CM4] gi|240011394|gb|ACS42620.1| DNA gyrase, subunit A (type II topoisomerase) [Methylobacterium extorquens AM1] gi|254271210|emb|CAX27222.1| DNA gyrase, subunit A (type II topoisomerase) [Methylobacterium extorquens DM4] Length = 911 Score = 393 bits (1009), Expect = e-107, Method: Compositional matrix adjust. Identities = 251/702 (35%), Positives = 381/702 (54%), Gaps = 81/702 (11%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 ++K VS+ + YL YA+S I RA+PD RDG KPVHRRI+ A E G + KS Sbjct: 18 DIKPVSITDEMRRSYLDYAMSVIVSRALPDARDGLKPVHRRILFAAHESGHLPERRYVKS 77 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 ARIVG+VIGK HPHGDQS+YD+LVR+AQ F R LI GQGNFG++DGD AAA RYTE+R Sbjct: 78 ARIVGDVIGKYHPHGDQSIYDALVRMAQDFSMRLMLIDGQGNFGSVDGDPAAAMRYTESR 137 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 + + A +L +D++ VDF+ Y+ E EP V P++FPNLL NG GIAVGMAT+IP HN Sbjct: 138 LAKPASALLSDIDKNTVDFQANYDGEHEEPTVLPARFPNLLVNGAGGIAVGMATNIPPHN 197 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 + E+ +A +ALID+P ++IE L E + GPDFPTGG+I+ R ++Y GRG +RA+ Sbjct: 198 LGELIDACIALIDDPSLTIEALNEIVPGPDFPTGGLIL-GRAGTRQAYATGRGSIIMRAK 256 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314 +EE+ + ++ TEIPYQV K+ L+EKIAEL+ KR+ + D+RDES D +RIV+ Sbjct: 257 SHIEELRKEREALIFTEIPYQVNKATLVEKIAELVKEKRVEGISDLRDESDRDGMRIVVE 316 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K ++ ++++ ++ + +++ F NM L+ GR P++M L +L + R EV+ R Sbjct: 317 IKRDAM-AEVVLNQLYRYTPLQSSFGCNMVALNGGR-PELMNLKDLLLAFNDFREEVVSR 374 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----------- 420 R+ F + R +L GL IA NIDE+I +IR P + +++R Sbjct: 375 RTKFLLNKARERAHVLCGLAIAVANIDEVIRLIRTSPDPNTAREALMARDWPAHDIAPLI 434 Query: 421 ---------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLL 465 + L+E Q AIL+LRL+ L L ++ EL L E +L Sbjct: 435 ALVDDPRYRVAEDGTYRLSEIQARAILDLRLQRLTALGRDEVGDELKKLADEIADYLDIL 494 Query: 466 NSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVIS 525 S + + E+ EV+ +F+ R+T E+ +D + + +I +E + V +S Sbjct: 495 RSRVRIQAIVKTELAEVRALFATP-----RKT---EIIDSDFSVEDEDLIAREDMVVTVS 546 Query: 526 NRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT--- 574 + G++ R+ + S + ++ D + A T +L S G+AY Sbjct: 547 HAGYVKRVPLSTYRAQRRGGKGRSGMATRDEDFVTRLFVASTHTPVLFFSDQGQAYKEKV 606 Query: 575 --LPAG----------NLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGN 622 LP N+L + GE I ++ L ++ T++ T ++ ++ GN Sbjct: 607 WRLPMAAPNARGKALVNILHLQNEGERISTIMPLPEDE---TSW---DTLDVMFATASGN 660 Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVV 664 + S+ R GK +K+ GDH+ V Sbjct: 661 VRRNKLSDFTTVNRNGKIAMKLDP-----------GDHIVHV 691 >gi|121605684|ref|YP_983013.1| DNA gyrase subunit A [Polaromonas naphthalenivorans CJ2] gi|120594653|gb|ABM38092.1| DNA gyrase subunit A [Polaromonas naphthalenivorans CJ2] Length = 889 Score = 393 bits (1009), Expect = e-107, Method: Compositional matrix adjust. Identities = 238/620 (38%), Positives = 354/620 (57%), Gaps = 67/620 (10%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 +SL + YL YA+S I RA+PD RDG KPVHRR++ AM E+ D+ +KKSARIV Sbjct: 11 ISLEEEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHELNNDWNRPYKKSARIV 70 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGDQSVYD++VR+AQ F R+ L+ GQGNFG++DGDSAAA RYTE R++++ Sbjct: 71 GDVIGKYHPHGDQSVYDTIVRMAQDFSLRHLLVDGQGNFGSVDGDSAAAMRYTEIRLSKI 130 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A +L +D++ VDF Y+ + EP+V P++ PNLL NG+ GIAVGMAT+IP HN+ E+ Sbjct: 131 AHELLADLDKETVDFGPNYDGSEQEPLVMPTRLPNLLVNGSGGIAVGMATNIPPHNLNEV 190 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 +A L L+ NPE SI++L+E I PDFPTGGII + + YR GRG +RA+ E Sbjct: 191 VDACLHLLKNPEASIDELMEIIPAPDFPTGGIIY-GINGVKDGYRTGRGRVVMRAKCHFE 249 Query: 260 EVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318 ++ +G I+V E+PYQV K L E++AEL+ K+I + I+DES + ++ R Sbjct: 250 DIDKGQRQSIIVDELPYQVNKKTLQERMAELVHEKKIEGISHIQDESDKSGMRLVIDLKR 309 Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378 P++++ +++ + ++ F +NM L G+ P++ L +++ +++HRREV+ RR+ F Sbjct: 310 GEVPEVVLNNLYKQTQLQDTFGINMVALINGQ-PKLCNLKDLIQVFISHRREVVTRRTVF 368 Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV-----------------MVSR- 420 ++ R +L+GL +A NIDE IAIIRN P PV M++R Sbjct: 369 TLRKARERGHVLEGLAVALANIDEFIAIIRNAPTP-PVAKAELMTRAWDSSLVREMLTRA 427 Query: 421 ----------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELD 452 + L+E Q IL +RL+ L LE+ +I +E Sbjct: 428 HADGGVVNADDYRPDGLEKSFGMGSDGLYRLSETQTQEILQMRLQRLTGLEQDKIVAEYK 487 Query: 453 NLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ 512 ++AE + + +L ++ I E+ +K F + T LG RR + E S D +T + Sbjct: 488 EVMAEIDDLLDILARPERVSTIIGQELAAIKLEFGQ-TKLGARR-SHIEHSSFDLST--E 543 Query: 513 AMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRIL 564 +I + V +S+ G+I R+ K A KE D + A+T D IL Sbjct: 544 DLITPTDMVVTLSHTGYIKSQPLSEYRAQKRGGRGKQATATKEDDWVDQLFIANTHDYIL 603 Query: 565 LLSTDGKAYTL-----PAGN 579 S G+ Y L PAG+ Sbjct: 604 CFSDRGRLYWLKVWEVPAGS 623 >gi|237793327|ref|YP_002860879.1| DNA gyrase, A subunit [Clostridium botulinum Ba4 str. 657] gi|229262824|gb|ACQ53857.1| DNA gyrase, A subunit [Clostridium botulinum Ba4 str. 657] Length = 826 Score = 393 bits (1009), Expect = e-107, Method: Compositional matrix adjust. Identities = 250/693 (36%), Positives = 404/693 (58%), Gaps = 36/693 (5%) Query: 12 LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71 L E + V + +++ Y+ YA+S I RA+PD+RDG KPVHRRII++M +GL Sbjct: 2 LNEGKILPVDVSKEMKKCYIDYAMSVIAGRALPDVRDGLKPVHRRIIYSMQGLGLAPEKG 61 Query: 72 FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131 ++K ARIVG+V+GK HPHGD +VY++LVR+AQ F RY L+ G GNFG++DGD AAA RY Sbjct: 62 YRKCARIVGDVLGKYHPHGDTAVYEALVRMAQDFSIRYTLVDGHGNFGSVDGDGAAAMRY 121 Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191 TEA+M++++ +++ ++++ VDF ++ E+ EP V PS+FPNLL NG++GIAVGMAT+I Sbjct: 122 TEAKMSKISMELIKDINKNTVDFIPNFDGEEEEPSVLPSRFPNLLVNGSAGIAVGMATNI 181 Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251 P HN+ E+ + + LI+N ++SI L+ I GPDFPT G+IV +R I E+Y GRG Sbjct: 182 PPHNLTEVIDGIIMLIENEDVSILDLMTKIKGPDFPTSGLIVGTR-GIREAYETGRGKVI 240 Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVR 310 +RA+ +EE +G I+VTEIPYQV KS+LIE +A L+ K+I + DIRDES + +R Sbjct: 241 IRAKAEIEE-EKGKNRIIVTEIPYQVNKSKLIENMANLVKDKKINGISDIRDESDRQGMR 299 Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370 IV+ K R +P++++ ++ + ++ F + M L + PQV+ L IL ++ ++E Sbjct: 300 IVIELK-RDANPNIVLNQLYKHTKLQDTFGIIMLAL-VNNQPQVLNLKEILVNYVEFQKE 357 Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQ 427 V+ RR+ F + R IL+GL IA +IDE+I +IR N + K +++ F+L+E Q Sbjct: 358 VIRRRTRFDLDKALARAHILEGLRIALDHIDEVIKLIRASKNTAEAKEGLMNNFNLSEKQ 417 Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487 AIL+++L+ L LE +I+ E L+ + +L+ + + I E+ E+K + Sbjct: 418 AQAILDMKLQRLTGLEREKIEEEYKELMEKISYFREILDKEELVLSIIKEELIEIKNKY- 476 Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSVD 539 G R T E+ + + + +IE + + + +++ G+I+ L K Sbjct: 477 -----GDERKT--EIVKGEHDIDIEDLIEDKKVIITLTHGGYIKRLDMDTYSSQKRGGKG 529 Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL-LSGR-GHGEAIQLLIDLN 597 + A K+ D ++ T IL + GK Y L A + +GR G I LI + Sbjct: 530 IQATSTKQDDFIENMFVTSTHSIILFFTNRGKVYKLKAYEIPEAGRTAKGTNIVNLIPIE 589 Query: 598 HNQDIVTAFVY---DSTCKLLVVSSKGNAFIVEESEI--IANTRKGKTFLKVSSEEKMKL 652 +N+ I T D ++ + G I++++EI ++ RKG E+ + Sbjct: 590 NNEKIQTVIGLKDIDDMKHFVMCTRNG---IIKKTEIKKYSSIRKGGLNAINLREDDELI 646 Query: 653 VVKVT--GDHVAVVGENRKLLIFSIDQIPEMSR 683 VK+T + + +V +N + F+ + + M R Sbjct: 647 DVKMTKGNNEIIIVTQNGYCIRFNEEDVRPMGR 679 >gi|168183733|ref|ZP_02618397.1| DNA gyrase, A subunit [Clostridium botulinum Bf] gi|182673195|gb|EDT85156.1| DNA gyrase, A subunit [Clostridium botulinum Bf] Length = 821 Score = 393 bits (1009), Expect = e-107, Method: Compositional matrix adjust. Identities = 250/693 (36%), Positives = 404/693 (58%), Gaps = 36/693 (5%) Query: 12 LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71 L E + V + +++ Y+ YA+S I RA+PD+RDG KPVHRRII++M +GL Sbjct: 2 LNEGKILPVDVSKEMKKCYIDYAMSVIAGRALPDVRDGLKPVHRRIIYSMQGLGLAPEKG 61 Query: 72 FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131 ++K ARIVG+V+GK HPHGD +VY++LVR+AQ F RY L+ G GNFG++DGD AAA RY Sbjct: 62 YRKCARIVGDVLGKYHPHGDTAVYEALVRMAQDFSIRYTLVDGHGNFGSVDGDGAAAMRY 121 Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191 TEA+M++++ +++ ++++ VDF ++ E+ EP V PS+FPNLL NG++GIAVGMAT+I Sbjct: 122 TEAKMSKISMELIKDINKNTVDFIPNFDGEEEEPSVLPSRFPNLLVNGSAGIAVGMATNI 181 Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251 P HN+ E+ + + LI+N ++SI L+ I GPDFPT G+IV +R I E+Y GRG Sbjct: 182 PPHNLTEVIDGIIMLIENEDVSILDLMTKIKGPDFPTSGLIVGTR-GIREAYETGRGKVI 240 Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVR 310 +RA+ +EE +G I+VTEIPYQV KS+LIE +A L+ K+I + DIRDES + +R Sbjct: 241 IRAKAEIEE-EKGKNRIIVTEIPYQVNKSKLIENMANLVKDKKINGISDIRDESDRQGMR 299 Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370 IV+ K R +P++++ ++ + ++ F + M L + PQV+ L IL ++ ++E Sbjct: 300 IVIELK-RDANPNIVLNQLYKHTKLQDTFGIIMLAL-VNNQPQVLNLKEILVNYVEFQKE 357 Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQ 427 V+ RR+ F + R IL+GL IA +IDE+I +IR N + K +++ F+L+E Q Sbjct: 358 VIRRRTRFDLDKALARAHILEGLRIALDHIDEVIKLIRASKNTAEAKEGLMNNFNLSEKQ 417 Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487 AIL+++L+ L LE +I+ E L+ + +L+ + + I E+ E+K + Sbjct: 418 AQAILDMKLQRLTGLEREKIEEEYKELMEKISYFREILDKEELVLSIIKEELIEIKNKY- 476 Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSVD 539 G R T E+ + + + +IE + + + +++ G+I+ L K Sbjct: 477 -----GDERKT--EIVKGEHDIDIEDLIEDKKVIITLTHGGYIKRLDMDTYSSQKRGGKG 529 Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL-LSGR-GHGEAIQLLIDLN 597 + A K+ D ++ T IL + GK Y L A + +GR G I LI + Sbjct: 530 IQATSTKQDDFIENMFVTSTHSIILFFTNRGKVYKLKAYEIPEAGRTAKGTNIVNLIPIE 589 Query: 598 HNQDIVTAFVY---DSTCKLLVVSSKGNAFIVEESEI--IANTRKGKTFLKVSSEEKMKL 652 +N+ I T D ++ + G I++++EI ++ RKG E+ + Sbjct: 590 NNEKIQTVIGLKDIDDMKHFVMCTRNG---IIKKTEIKKYSSIRKGGLNAINLREDDELI 646 Query: 653 VVKVT--GDHVAVVGENRKLLIFSIDQIPEMSR 683 VK+T + + +V +N + F+ + + M R Sbjct: 647 DVKMTKGNNEIIIVTQNGYCIRFNEEDVRPMGR 679 >gi|307331913|ref|ZP_07611009.1| DNA gyrase, A subunit [Streptomyces violaceusniger Tu 4113] gi|306882431|gb|EFN13521.1| DNA gyrase, A subunit [Streptomyces violaceusniger Tu 4113] Length = 874 Score = 392 bits (1008), Expect = e-107, Method: Compositional matrix adjust. Identities = 232/627 (37%), Positives = 360/627 (57%), Gaps = 34/627 (5%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 V+ V L ++ YL YA+S I RA+PD+RDG KPVHRR+++AM + G F K A Sbjct: 26 VEPVGLETEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMYDGGYRPEKGFYKCA 85 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+V+G HPHGD S+YD+LVRLAQP+ R PL+ GNFG+ D AAA RYTE +M Sbjct: 86 RVVGDVMGTYHPHGDSSIYDALVRLAQPWSMRMPLVDSNGNFGSPGNDPAAAMRYTECKM 145 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 +A +L+ +DE+ VDF+D Y+ + EP V P++ PNLL NG++GIAVGMAT+IP HN+ Sbjct: 146 DPLAMEMLRDIDEETVDFQDNYDGRNQEPTVLPARIPNLLVNGSAGIAVGMATNIPPHNL 205 Query: 197 QEICEAALALIDNPEISIEKLLEYII----GPDFPTGGIIVESRESIVESYRLGRGGFRV 252 +E+ E A + NP+ + E+LLE +I GPDFPTG ++V R+ I E+YR GRG + Sbjct: 206 REVAEGAQWFLANPQATQEELLEALIDRIKGPDFPTGALVV-GRKGIEEAYRTGRGSITM 264 Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV--R 310 RA VEE+ +G C+VVTE+PYQV L +KIA+L+ ++ + D+RDE++ R Sbjct: 265 RAVVEVEEI-QGRQCLVVTELPYQVNPDNLAQKIADLVKDGKVGGIADVRDETSSRTGQR 323 Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370 +V+ K R +++ +++ +D++T F NM L G VP+ + LD ++ W+ H+ E Sbjct: 324 LVIVLK-RDAVAKVVLNNLYKHTDLQTNFGANMLALVDG-VPRTLSLDAFIRNWVTHQIE 381 Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQ 427 V+ RR+ FR++ + R IL+GLL A IDE+IA+IR D + ++ + E Q Sbjct: 382 VIVRRTRFRLRKAEERAHILRGLLKALDAIDEVIALIRRSDTVDTARGGLMGLLEIDEIQ 441 Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487 +AIL ++LR L LE +I E D L ++ ++ +++L S ++Q I+ E+ + E F Sbjct: 442 ANAILEMQLRRLAALERQKIVQEHDELQSKIDEYNAILASPERQRQIISEELTAIVEKFG 501 Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVD 539 RR+ D + +I +E I V I+ G++ RS K Sbjct: 502 DD-----RRSKLVPF---DGDMSIEDLIAEEDIVVTITRGGYVKRTKTEDYRSQKRGGKG 553 Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEAIQLLIDLN 597 + K+ D + + T +L + G+ Y A L +GR G+ + L+ Sbjct: 554 VRGTKLKQDDIVSHFFVSTTHHWLLFFTNKGRVYRAKAYELPDAGREARGQHVANLLAFQ 613 Query: 598 HNQDIVTAFV---YDSTCKLLVVSSKG 621 ++ I Y++ L++ + G Sbjct: 614 PDEKIARILAIRDYEAVPYLVLATKSG 640 >gi|221068230|ref|ZP_03544335.1| DNA gyrase, A subunit [Comamonas testosteroni KF-1] gi|220713253|gb|EED68621.1| DNA gyrase, A subunit [Comamonas testosteroni KF-1] Length = 898 Score = 392 bits (1008), Expect = e-107, Method: Compositional matrix adjust. Identities = 237/619 (38%), Positives = 353/619 (57%), Gaps = 62/619 (10%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 +SL + YL YA+S I RA+PD RDG KPVHRR+++AM E+ D+ +KKSARIV Sbjct: 11 ISLEEEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMHELNNDWNRPYKKSARIV 70 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGD +VYD++VR+AQ F R+ L+ GQGNFG++DGDSAAA RYTE R++++ Sbjct: 71 GDVIGKYHPHGDSAVYDTIVRMAQDFSLRHMLVDGQGNFGSVDGDSAAAMRYTEIRLSKI 130 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A +L +D++ VDF Y+ +SEP+V PS+ PNLL NG+SGIAVGMAT+IP HN+ E+ Sbjct: 131 AHEMLGDIDKETVDFGPNYDGSESEPLVLPSRLPNLLVNGSSGIAVGMATNIPPHNLNEV 190 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 + L L+ NP+ SI++L+E I PDFPT GII + E YR GRG +RA+ E Sbjct: 191 VDGCLHLLQNPDASIDELMEIIPAPDFPTAGIIY-GINGVKEGYRTGRGRVVMRAKCHFE 249 Query: 260 EVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318 ++ +G I+V E+PYQV K L E++AEL+ K+I + I+DES + ++ R Sbjct: 250 DIDKGQRQSIIVDELPYQVNKKTLQERMAELVHEKKIEGISHIQDESDKSGMRLVIELKR 309 Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378 P++++ +++ L+ ++ F +NM L G+ P++ L +++ +L HRREV+ RR+ F Sbjct: 310 GEVPEVVLNNLYKLTQLQDTFGMNMVALVNGQ-PKLCNLKDLIQVFLEHRREVVTRRTVF 368 Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV-----------------MVSR- 420 ++ R +L+GL +A NID+ IAIIRN P PV M++R Sbjct: 369 ELRKARDRGHVLEGLAVALANIDDFIAIIRNAPTP-PVAKAALMEKSWDSKLVREMLTRT 427 Query: 421 ----------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELD 452 + L+E Q IL +RL+ L LE+ +I +E Sbjct: 428 RTDGGVVNADDYRPEGLEVEFGMQGNGLYRLSETQAQEILQMRLQRLTGLEQDKIVAEYK 487 Query: 453 NLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ 512 ++++ E + +L ++ I E+ VK F +S G RR+T E S D +T + Sbjct: 488 DIMSVIEDLLDILAKPERVSIIIGEELNAVKAEFGQSKK-GERRST-VEYSAQDLST--E 543 Query: 513 AMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRIL 564 +I + V +S+ G+I RS K A KE D + A+T D +L Sbjct: 544 DLITPTDMVVTLSHTGYIKSQPLSEYRSQKRGGRGKLATATKEDDWIDQLFIANTHDYLL 603 Query: 565 LLSTDGKAYTLPAGNLLSG 583 S G+ Y L + SG Sbjct: 604 CFSNRGRMYWLKVWEVPSG 622 >gi|21910346|ref|NP_664614.1| DNA gyrase subunit A [Streptococcus pyogenes MGAS315] gi|28895921|ref|NP_802271.1| DNA gyrase subunit A [Streptococcus pyogenes SSI-1] gi|71903513|ref|YP_280316.1| DNA gyrase subunit A [Streptococcus pyogenes MGAS6180] gi|73919726|sp|Q8K7H2|GYRA_STRP3 RecName: Full=DNA gyrase subunit A gi|21904542|gb|AAM79417.1| DNA gyrase subunit A [Streptococcus pyogenes MGAS315] gi|28811171|dbj|BAC64104.1| putative DNA gyrase A subunit [Streptococcus pyogenes SSI-1] gi|71802608|gb|AAX71961.1| DNA gyrase subunit A [Streptococcus pyogenes MGAS6180] Length = 828 Score = 392 bits (1008), Expect = e-107, Method: Compositional matrix adjust. Identities = 222/580 (38%), Positives = 354/580 (61%), Gaps = 26/580 (4%) Query: 12 LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71 + + N+ V+L ++ ++ YA+S I RA+PD+RDG KPVHRRI++ M+E+G+ Sbjct: 1 MQDRNLIDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKP 60 Query: 72 FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131 KKSARI G+V+GK HPHGD S+Y+++VR+AQ + R+ L+ G GNFG++DGD AAA RY Sbjct: 61 HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRY 120 Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191 TEARM+++A +L+ ++++ V+F+D Y+ + EPVV P++FPNLL NG +GIAVGMAT+I Sbjct: 121 TEARMSKIALELLRDINKNTVNFQDNYDGSEREPVVLPARFPNLLVNGATGIAVGMATNI 180 Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251 P HN+ E +A ++++P+ + +L+E I GPDFPTG +++ R I +Y G+G Sbjct: 181 PPHNLAESIDAVKMVMEHPDCTTRELMEVIPGPDFPTGALVM-GRSGIHRAYDTGKGSIV 239 Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVR 310 +R+R +E G IVVTE PY V K+++ E I L KR+ + +RDES+ E VR Sbjct: 240 LRSRTEIETTQTGRERIVVTEFPYGVNKTKVHEHIVRLAQEKRLEGITAVRDESSREGVR 299 Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370 V+ + R +++ ++F L+ ++T F NM + G VP+++ L I+ +++H++E Sbjct: 300 FVIEIR-REASATVILNNLFKLTSLQTNFSFNMLAIENG-VPKILSLRQIIDNYISHQKE 357 Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQ 427 V+ RR+ F + R IL+GLLIA ++DE+IAIIRN + + ++SRF L+E Q Sbjct: 358 VIIRRTRFDKDKAEARAHILEGLLIALDHLDEVIAIIRNSETDVIAQTELMSRFDLSERQ 417 Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487 AIL++RLR L LE +I+SE D+LLA + +L ++ I E+ E+K ++ Sbjct: 418 SQAILDMRLRRLTGLERDKIQSEYDDLLALIADLSDILAKPERIITIIKEEMDEIKRKYA 477 Query: 488 KSTDLGRRRTTFC--EVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHS 537 RRT EV + + +IE+E + + +SN+G+I+ L K Sbjct: 478 NP-----RRTELMVGEVL----SLEDEDLIEEEDVLITLSNKGYIKRLAQDEFRAQKRGG 528 Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPA 577 + D ++ + T D +L + G+ Y L A Sbjct: 529 RGVQGTGVNNDDFVRELVSTSTHDTLLFFTNFGRVYRLKA 568 >gi|284047397|ref|YP_003397736.1| DNA gyrase, A subunit [Acidaminococcus fermentans DSM 20731] gi|283951618|gb|ADB46421.1| DNA gyrase, A subunit [Acidaminococcus fermentans DSM 20731] Length = 831 Score = 392 bits (1008), Expect = e-107, Method: Compositional matrix adjust. Identities = 225/591 (38%), Positives = 359/591 (60%), Gaps = 33/591 (5%) Query: 4 DNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63 D ++ T+ V V + +++ Y+ YA+S I +RA+PD+RDG KPVHRRI++AM+E Sbjct: 3 DQQNDKQTISAGKVIPVYVEDEMQKCYIDYAMSVIVQRALPDVRDGLKPVHRRILYAMNE 62 Query: 64 MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123 G+ A+KKSARIVG+V+GK HPHGD SVYD++VRLAQ F RY ++ G GNFG++DG Sbjct: 63 AGMLPNKAYKKSARIVGDVLGKYHPHGDSSVYDAIVRLAQDFSTRYLMVDGHGNFGSVDG 122 Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183 D AAA RYTE RM ++A +L+ +++D VDF Y+E EP V P+K P LL NG++GI Sbjct: 123 DPAAAMRYTEVRMGKIAVEMLRDIEKDTVDFIPNYDESLKEPTVLPAKVPALLINGSAGI 182 Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243 AVGMAT+IP HN+ E+ +A + LID+P+ ++E+L+ + GPDFPTG I+ I ++Y Sbjct: 183 AVGMATNIPPHNLGEVVDACVMLIDHPDATVEQLMTAVKGPDFPTGAKIL-GLSGIRQAY 241 Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303 GRG +VRA+ VE + + IVVTEIPYQV K++LIE IA L+ K + + D+RD Sbjct: 242 TTGRGVVKVRAKTHVEPMPKNKNRIVVTEIPYQVNKAKLIENIAHLVQDKTLEGITDLRD 301 Query: 304 ES-AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362 ES + +RIV+ ++ + P++++ ++ + ++ F + M L G P+++ L IL+ Sbjct: 302 ESDRKGMRIVIELRSDVV-PEIMLNKLYKHTQLQDSFGIIMLALVNGH-PRILNLKQILE 359 Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVS 419 +L H+++V+ R+ + ++ R IL+GL IA ++DE+IA IR N + K ++ Sbjct: 360 YYLDHQKDVITRKCRYELKKAKERAHILEGLKIALDHLDEVIATIRASANGEVAKAALME 419 Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479 +F L++ Q AIL++RL+ L LE +I+ E ++A ++ +L+ + ++ Sbjct: 420 KFGLSDRQAQAILDMRLQRLTGLERQKIEDEYKEVMATIAYLEDVLSDEHKIMGIAREDL 479 Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWI-------- 530 +VK+ F + RRT+ D L+ + +I +E + + IS++ +I Sbjct: 480 LDVKKRFGDA-----RRTSIV----PDTGDLETEDLIAEEDVVITISHQSYIKRQALTNF 530 Query: 531 -------RSLKSHSVDLSALHFK-EGDSLKIALHAHTTDRILLLSTDGKAY 573 R +K+ S + K +GD + L A T D IL + G+ Y Sbjct: 531 RNQNRGGRGIKAGSGKIVKEDNKVKGDFSEHLLMASTHDNILFFTNRGRVY 581 >gi|145588680|ref|YP_001155277.1| DNA gyrase subunit A [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145047086|gb|ABP33713.1| DNA gyrase subunit A [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 900 Score = 392 bits (1008), Expect = e-107, Method: Compositional matrix adjust. Identities = 260/748 (34%), Positives = 404/748 (54%), Gaps = 89/748 (11%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 +SL + YL YA+S I RA+PD+RDG KPVHRR++ AM E+ D+ A+KKSARIV Sbjct: 11 ISLEDEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMYELNNDWNRAYKKSARIV 70 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGD +VYD++VR+AQ F RY L+ GQGNFG++DGD+AAA RYTE R+ ++ Sbjct: 71 GDVIGKYHPHGDSAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRLRKI 130 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A +L +D++ VDF Y+ + EP++ P+K PNLL NG+SGIAVGMAT+IP HN+ E+ Sbjct: 131 AHDLLADLDKETVDFGPNYDGSEKEPLILPAKVPNLLINGSSGIAVGMATNIPPHNLDEV 190 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 A L ++ NPE +I++L+E I PDFPT GII + + E YR GRG +RA+ E Sbjct: 191 ISACLHVLHNPECTIDELIEIIPAPDFPTAGIIY-GVQGVREGYRTGRGRVVMRAKTHFE 249 Query: 260 EVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318 ++ +G+ I+V E+PYQV K L+E+IAEL+ K++ + D+RDES + V+ R Sbjct: 250 DLDKGARQAIIVDELPYQVNKKNLLERIAELVNEKKVEGISDLRDESDKSGMRVVIELKR 309 Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378 P++++ +++ + ++ F +NM L + P+++ L +L+ +L HRREV+ RR+ F Sbjct: 310 GEVPEVVLNNLYKSTQLQDNFGMNMVAL-VDNQPRLLNLKQMLEYFLQHRREVVTRRTIF 368 Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAII------------------------------- 407 ++ R +L+GL +A NIDE IAII Sbjct: 369 ELRKARDRGHVLEGLAVALANIDEFIAIIKAAANPVVAKQELMGKAWDSSMVREMLARAE 428 Query: 408 ------RNEDKPKPVM-------VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNL 454 RN +P+ ++ + L+++Q IL +RL+ L LE+ +I +E + Sbjct: 429 TDTPGGRNAYRPEGLLPEYGMQTTGLYRLSDSQAQEILQMRLQRLTGLEQDKIVNEYKEV 488 Query: 455 LAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS-KSTDLGRRRTTFCEVSRADKATLQQA 513 ++E + LL ++ I E++EV+ F D GRR +F E++ + T + Sbjct: 489 MSEISDLLDLLAKPERVTQVIETELKEVQAEFGVAGGDTGRR--SFIEMNATELFT--ED 544 Query: 514 MIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565 +I + + V +SN G++ R+ K A K D + A+T D IL Sbjct: 545 LITPQDMVVTLSNTGYMKSQPLSEYRAQKRGGRGKQAAATKNEDWIDTLFVANTHDIILC 604 Query: 566 LSTDGKAYTL-----PAGNLLSGRG----------HGEAIQLLIDLNHNQDIVTAFVYDS 610 S G+ Y L P G+ S RG GE I +++ + QD +V+ + Sbjct: 605 FSDRGRMYWLKVWEVPQGSRTS-RGKPIVNMFPLIEGEKITVILPIKGYQD--DHYVFMA 661 Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT-GDH-VAVVGENR 668 T V ++ + F +N RK +E + +T G H V + + Sbjct: 662 TSLGTVKKTRLSDF--------SNPRKAGIIAVDLNENDFLVGAAITDGQHDVMLFSDAG 713 Query: 669 KLLIFSIDQIPEMSR-GKGVRLQSYKDG 695 K + F + + M R +GVR + DG Sbjct: 714 KAVRFDENDVRPMGRTARGVRGMNLGDG 741 >gi|187777361|ref|ZP_02993834.1| hypothetical protein CLOSPO_00917 [Clostridium sporogenes ATCC 15579] gi|187774289|gb|EDU38091.1| hypothetical protein CLOSPO_00917 [Clostridium sporogenes ATCC 15579] Length = 846 Score = 392 bits (1008), Expect = e-107, Method: Compositional matrix adjust. Identities = 249/693 (35%), Positives = 404/693 (58%), Gaps = 36/693 (5%) Query: 12 LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71 L E + V + +++ Y+ YA+S I RA+PD+RDG KPVHRRII++M +GL Sbjct: 2 LNEGKILPVDVSKEMKKCYIDYAMSVIAGRALPDVRDGLKPVHRRIIYSMQGLGLAPEKG 61 Query: 72 FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131 ++K ARIVG+V+GK HPHGD +VY++LVR+AQ F RY L+ G GNFG++DGD AAA RY Sbjct: 62 YRKCARIVGDVLGKYHPHGDTAVYEALVRMAQDFSIRYTLVDGHGNFGSVDGDGAAAMRY 121 Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191 TEA+M++++ +++ ++++ VDF ++ E+ EP V PS+FPNLL NG++GIAVGMAT+I Sbjct: 122 TEAKMSKISMELIKDINKNTVDFIPNFDGEEEEPSVLPSRFPNLLVNGSAGIAVGMATNI 181 Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251 P HN+ E+ + + LI+N +++I L+ I GPDFPT G+IV +R I E+Y GRG Sbjct: 182 PPHNLTEVIDGIIMLIENEDVNILDLMTKIKGPDFPTSGLIVGTR-GIREAYETGRGKVI 240 Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVR 310 +RA+ +EE +G I+VTEIPYQV KS+LIE +A L+ K+I + DIRDES + +R Sbjct: 241 IRAKAEIEE-EKGKNRIIVTEIPYQVNKSKLIENMANLVKDKKINGISDIRDESDRQGMR 299 Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370 IV+ K R +P++++ ++ + ++ F + M L + PQV+ L IL ++ ++E Sbjct: 300 IVIELK-RDANPNIVLNQLYKHTKLQDTFGIIMLAL-VNNQPQVLNLKEILVNYVEFQKE 357 Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQ 427 V+ RR+ F + R IL+GL IA +IDE+I +IR N + K +++ F+L+E Q Sbjct: 358 VIRRRTRFDLDKALARAHILEGLRIALDHIDEVIKLIRASKNTAEAKEGLMNNFNLSEKQ 417 Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487 AIL+++L+ L LE +I+ E L+ + +L+ + + I E+ E+K + Sbjct: 418 AQAILDMKLQRLTGLEREKIEEEYKELMEKISYFREILDKEELVLSIIKEELIEIKNKY- 476 Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSVD 539 G R T E+ + + + +IE + + + +++ G+I+ L K Sbjct: 477 -----GDERKT--EIVKGEHDIDIEDLIEDKKVIITLTHGGYIKRLDMDTYSSQKRGGKG 529 Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEAIQLLIDLN 597 + A K+ D ++ T IL + GK Y L A + +GR G I LI + Sbjct: 530 IQATSTKQDDFIENMFVTSTHSTILFFTNRGKVYKLKAYEIPEAGRTAKGTNIINLIPIE 589 Query: 598 HNQDIVTAFVY---DSTCKLLVVSSKGNAFIVEESEI--IANTRKGKTFLKVSSEEKMKL 652 +N+ I T D ++ + G I++++EI ++ RKG E+ + Sbjct: 590 NNEKIQTVIGLKDIDDMKHFVMCTRNG---IIKKTEIKKYSSIRKGGLNAINLREDDELI 646 Query: 653 VVKVT--GDHVAVVGENRKLLIFSIDQIPEMSR 683 VK+T + + +V +N + F+ + + M R Sbjct: 647 DVKMTKGNNEIIIVTQNGYCIRFNEEDVRPMGR 679 >gi|255087957|ref|XP_002505901.1| predicted protein [Micromonas sp. RCC299] gi|226521172|gb|ACO67159.1| predicted protein [Micromonas sp. RCC299] Length = 963 Score = 392 bits (1008), Expect = e-107, Method: Compositional matrix adjust. Identities = 240/673 (35%), Positives = 370/673 (54%), Gaps = 41/673 (6%) Query: 15 ENVKAVSLRFALE--ERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72 E+ + V L LE + YL+YA+S I RA+PD+RDG KPVHRRI++AM E+GLD F Sbjct: 105 EDERIVDLELHLEASQSYLSYAMSVIVGRALPDVRDGLKPVHRRILYAMHELGLDSKKPF 164 Query: 73 KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132 KK AR+VGEV+GK HPHGDQSVYD+LVR+AQ F L+ G GNFG++D D AA RYT Sbjct: 165 KKCARVVGEVLGKFHPHGDQSVYDALVRMAQDFSMSSALVDGHGNFGSLDADPPAAMRYT 224 Query: 133 EARMTQVAE-LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191 E R+ AE ++L + DAVDF +T++ +EP V P++ PNLL NG++GIAVGMATSI Sbjct: 225 ECRLKPAAEAMLLADIGLDAVDFTETFDGSQTEPAVLPARLPNLLINGSTGIAVGMATSI 284 Query: 192 PSHNVQEICEAALALIDNPE-ISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250 P HN++E+ A + +PE ++E LLE + PDFPTGGIIV+ R E YR G+GG Sbjct: 285 PPHNLREVANALVRFASDPERCTLEDLLEVMPAPDFPTGGIIVQQRGGFKEMYRTGKGGV 344 Query: 251 RVRARWCVEEV------GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304 +R VE+V G+ +V+T IPYQ K+ L E+IA+L+ ++ I + D+RDE Sbjct: 345 NLRGAATVEKVSGGGRNGQARDAVVITSIPYQTNKASLCEQIADLVNSRTIEGVSDVRDE 404 Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364 S D V+ R D + +++ ++ + ++TR +N+ L +GR P+V+ L I++E+ Sbjct: 405 SDRDGMRVVVEIRRGADANFVLDQLYARTKLQTRVSVNLVGL-VGREPKVLSLMEIMREF 463 Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDKPKPVMVSR--- 420 LA R + + RR+ +Q R+ +++G L D ++A IR +D P + Sbjct: 464 LAFRCDAVERRARHELQKASGRLHVVEGYLAVQAAPDAVVAAIRAAKDGPTAQAALQEKP 523 Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480 F L+E Q +A+L + LR L LE ++K+E L A E + LL + +A E + Sbjct: 524 FWLSEKQAEAVLAMPLRRLTGLEHDKLKTEEAELTARVEDLTGLLGDRSRVIATVAREAK 583 Query: 481 EVKEIFS--KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL----- 533 E+++ F + TD+ T ++ A K + M+ P V+++NRG+I+ + Sbjct: 584 ELRDTFGVDRRTDI----DTDAQI-HAKKMNVTLDML-NSPSLVIMTNRGYIKRIDPAVF 637 Query: 534 ---KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGE 588 + + + GD + H + D +L + G+ + + A N+ S G Sbjct: 638 SKQNRATRGRNMGKMRGGDEVTKVTHCNGLDTVLFFTDRGRVHAVRAFNIPQASTSALGT 697 Query: 589 AIQLLIDLNHNQDIVTAFVYD--------STCKLLVVSSKGNAFIVEESEIIANTRKGKT 640 ++ L + I D L V+++G SE + GK Sbjct: 698 PFTRVLKLAEGESITAMLPVDTTEEPGEEGETSLCFVTARGLIKRTCASEFVGIRNNGKK 757 Query: 641 FLKVSSEEKMKLV 653 L + +++K V Sbjct: 758 ALVLRKGDRLKHV 770 >gi|75910661|ref|YP_324957.1| DNA gyrase subunit A [Anabaena variabilis ATCC 29413] gi|75704386|gb|ABA24062.1| DNA gyrase subunit A [Anabaena variabilis ATCC 29413] Length = 872 Score = 392 bits (1008), Expect = e-107, Method: Compositional matrix adjust. Identities = 242/665 (36%), Positives = 375/665 (56%), Gaps = 37/665 (5%) Query: 11 TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70 T +E + LR + YL YA+S I RA+PD RDG KPVHRRI++AM E+GL Sbjct: 2 TTSQERIIPTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMHELGLTHDR 61 Query: 71 AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130 FKK AR+VGEV+GK HPHGD +VYD+LVR+AQ F R PL++G GNFG++D D AA R Sbjct: 62 PFKKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRSPLVNGHGNFGSVDNDPPAAMR 121 Query: 131 YTEARMTQV-AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189 YTE R+ + + +LQ ++ + VDF D ++ EP V PS+ P LL NG+SGIAVGMAT Sbjct: 122 YTECRLQALTSSALLQDIESETVDFADNFDGSQQEPTVLPSRIPQLLLNGSSGIAVGMAT 181 Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249 +IP HN+ E+ + +A+I NPEI+ +L++YI GPDFPTG I+ +I E+Y GRG Sbjct: 182 NIPPHNLGELIDGVVAVIHNPEITDLQLMQYIHGPDFPTGAQIL-GMGAIKEAYTTGRGS 240 Query: 250 FRVRARWCVEEV---GRGSW-CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305 +R +E + GR I++TE+PYQ K+ LIEKIAEL+ KRI + DIRDES Sbjct: 241 ITMRGVANIETIEHRGRPDREAIIITELPYQTNKAALIEKIAELVNEKRIEGIADIRDES 300 Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365 D ++ R P +++ +++ + ++ F NM L G PQ++ L L +L Sbjct: 301 DRDGMRIVIELKRDAYPRVVLNNLYKQTPLQANFGANMLALVNGE-PQILTLKQFLNVFL 359 Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN-EDKP--KPVMVSRFS 422 R E + RR+ + ++ + R +L+GLLIA ++D II +IR+ D P K +++ + Sbjct: 360 DFRIESITRRTRYELRKAEERDHLLQGLLIALSHLDAIINLIRSASDTPTAKGELITTYM 419 Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482 L+E Q DAIL ++LR L LE +I+ E ++L + + +L ++ I EI ++ Sbjct: 420 LSEVQADAILQMQLRRLTALEADKIRLEHEDLQTQIADLQDILARRERILEIIETEITQI 479 Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL-- 540 K F+ RRT ++ A+ ++ +I E ++++ +G+I+ + ++ + Sbjct: 480 KTSFATP-----RRTV---ITHAEGEIDERDLIANEKAIILLTQQGYIKRMPVNTFEAQS 531 Query: 541 ------SALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEA 589 +A K+ D+++ L D +L S G KAY +P + S G Sbjct: 532 RATRGKAAAKVKDDDTIEHFLTCCDHDSVLFFSDRGVVYCLKAYQIPVSSRTS---RGTP 588 Query: 590 IQLLIDLNHNQDIVTAFVYD--STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE 647 I L+ + + I + D ++ + LV+ +KG E +N R + +S E Sbjct: 589 IVQLLPIPKEEKITSIVPVDEFTSEEYLVMLTKGGNIKKTELAAFSNIR-ANGLIAISLE 647 Query: 648 EKMKL 652 E +L Sbjct: 648 EGDQL 652 >gi|104773263|ref|YP_618243.1| DNA gyrase, subunit A [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|103422344|emb|CAI96852.1| DNA gyrase, subunit A [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] Length = 823 Score = 392 bits (1008), Expect = e-107, Method: Compositional matrix adjust. Identities = 220/628 (35%), Positives = 369/628 (58%), Gaps = 38/628 (6%) Query: 6 ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65 + N N + ++ V L + +L YA+S I RA+PD+RDG KPV RRI++ M+E+G Sbjct: 1 MDNENQGQDRRIRNVDLTQMMRSSFLDYAMSVIVARALPDVRDGLKPVQRRILYGMNELG 60 Query: 66 LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125 + +KKSARIVG+V+GK HPHGD S+Y ++ +AQ F RY L+ G GNFG++DGD Sbjct: 61 VTPDKPYKKSARIVGDVMGKYHPHGDSSIYLAMAHMAQDFAYRYMLVDGHGNFGSVDGDR 120 Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185 AA RYTEARM+++A +L+ ++++ VD++ Y++ ++EP V P++ PNLL NG+SGIAV Sbjct: 121 PAAMRYTEARMSKIAVEMLRDINKNTVDWQRNYDDTENEPTVLPARIPNLLVNGSSGIAV 180 Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245 GM T+IP HN+ E+ L+ NP+++ ++L++ I GPDFPTGGI++ R ++ +Y Sbjct: 181 GMTTNIPPHNLSEVISGIHMLMKNPDVTTKELMKAIPGPDFPTGGILM-GRGGVLHAYES 239 Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305 G+G VRA+ +E G I+V+EIPY V K+ L++KIAEL K I + +RDES Sbjct: 240 GKGNIVVRAKTEIETEKSGRERIIVSEIPYLVNKAELVQKIAELARDKVIDGITGVRDES 299 Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365 + + R +++ ++F + M+T F +NM + G P+ + L +L+ +L Sbjct: 300 DQSGMRITIDVRRDASASVVLNNLFKETQMQTNFAMNMVAIVDG-APKFLTLKQMLQYYL 358 Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFS 422 AH+ +V+ RR+ F ++ + R IL+GL +A +IDEI+++IRN D K ++SRF Sbjct: 359 AHQEDVITRRTKFDLEKAEARAHILEGLRVALDHIDEIVSLIRNSESSDIAKAGLISRFD 418 Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482 L + Q AIL++RL L LE +++ E LL + +L ++ I E+ ++ Sbjct: 419 LDDRQAQAILDMRLVRLTGLERDKVEGEYQELLVKIADYKDILAKPERIDQIIYDELLDI 478 Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSL-----KSH 536 ++ F +RRT +++ ++ T++ + +IE++ + +S++G+++ + K+ Sbjct: 479 QKRFGD-----KRRT---QITASEVVTIEDEDLIEEQDALLTLSHQGYVKRMLIDDFKTQ 530 Query: 537 S---VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAG 578 + + + ++GD ++ L++ T D + + GK Y LP Sbjct: 531 NRGGRGIKGMGVQKGDFIEHLLYSSTHDYLFFYTNKGKVYMKKAYEIPEYGRSAKGLPIV 590 Query: 579 NLLSGRGHGEAIQLLIDLNHNQDIVTAF 606 NLL GE IQ +++L D AF Sbjct: 591 NLLQ-LDKGEHIQTVVNLPQGHDDDYAF 617 >gi|50914216|ref|YP_060188.1| DNA gyrase subunit A [Streptococcus pyogenes MGAS10394] gi|94994419|ref|YP_602517.1| DNA gyrase subunit A [Streptococcus pyogenes MGAS10750] gi|139473757|ref|YP_001128473.1| DNA gyrase subunit A [Streptococcus pyogenes str. Manfredo] gi|306827344|ref|ZP_07460631.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus pyogenes ATCC 10782] gi|73919727|sp|Q5XC58|GYRA_STRP6 RecName: Full=DNA gyrase subunit A gi|50903290|gb|AAT87005.1| DNA gyrase subunit A [Streptococcus pyogenes MGAS10394] gi|94547927|gb|ABF37973.1| DNA gyrase subunit A [Streptococcus pyogenes MGAS10750] gi|134272004|emb|CAM30243.1| DNA gyrase subunit A [Streptococcus pyogenes str. Manfredo] gi|304430491|gb|EFM33513.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus pyogenes ATCC 10782] Length = 828 Score = 392 bits (1008), Expect = e-107, Method: Compositional matrix adjust. Identities = 222/580 (38%), Positives = 354/580 (61%), Gaps = 26/580 (4%) Query: 12 LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71 + + N+ V+L ++ ++ YA+S I RA+PD+RDG KPVHRRI++ M+E+G+ Sbjct: 1 MQDRNLIDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKP 60 Query: 72 FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131 KKSARI G+V+GK HPHGD S+Y+++VR+AQ + R+ L+ G GNFG++DGD AAA RY Sbjct: 61 HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRY 120 Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191 TEARM+++A +L+ ++++ V+F+D Y+ + EPVV P++FPNLL NG +GIAVGMAT+I Sbjct: 121 TEARMSKIALELLRDINKNTVNFQDNYDGSEREPVVLPARFPNLLVNGATGIAVGMATNI 180 Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251 P HN+ E +A ++++P+ + +L+E I GPDFPTG +++ R I +Y G+G Sbjct: 181 PPHNLAESIDAVKMVMEHPDCTTRELMEVIPGPDFPTGALVM-GRSGIHRAYDTGKGSIV 239 Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVR 310 +R+R +E G IVVTE PY V K+++ E I L KR+ + +RDES+ E VR Sbjct: 240 LRSRTEIETTQTGRERIVVTEFPYGVNKTKVHEHIVRLAQEKRLEGITAVRDESSREGVR 299 Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370 V+ + R +++ ++F L+ ++T F NM + G VP+++ L I+ +++H++E Sbjct: 300 FVIEIR-REASATVILNNLFKLTSLQTNFSFNMLAIENG-VPKILSLRQIIDNYISHQKE 357 Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQ 427 V+ RR+ F + R IL+GLLIA ++DE+IAIIRN + + ++SRF L+E Q Sbjct: 358 VIIRRTRFDKDKAEARAHILEGLLIALDHLDEVIAIIRNSETDVIAQTELMSRFDLSERQ 417 Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487 AIL++RLR L LE +I+SE D+LLA + +L ++ I E+ E+K ++ Sbjct: 418 SQAILDMRLRRLTGLERDKIQSEYDDLLALIADLSDILAKPERIITIIKEEMDEIKRKYA 477 Query: 488 KSTDLGRRRTTFC--EVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHS 537 RRT EV + + +IE+E + + +SN+G+I+ L K Sbjct: 478 NP-----RRTELMVGEVL----SLEDEDLIEEEDVLITLSNKGYIKRLAQDEFRAQKRGG 528 Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPA 577 + D ++ + T D +L + G+ Y L A Sbjct: 529 RGVQGTGVNNDDFVRELVSTSTHDTLLFFTNFGRVYRLKA 568 >gi|300213944|gb|ADJ78360.1| DNA gyrase subunit A [Lactobacillus salivarius CECT 5713] Length = 850 Score = 392 bits (1008), Expect = e-107, Method: Compositional matrix adjust. Identities = 219/582 (37%), Positives = 344/582 (59%), Gaps = 40/582 (6%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 +K V L + +L YA+S I RA+PD+RDG KPVHRRI++ M+E+G+ +KKSA Sbjct: 8 IKDVDLSKVMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPYKKSA 67 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 RIVG+V+GK HPHGD ++Y+S+VR+AQ F RY L+ G GNFG++DGD AAA RYTEARM Sbjct: 68 RIVGDVMGKFHPHGDSAIYESMVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAMRYTEARM 127 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 +++ +L+ +++D +DF+ Y+ + EPVV P++FPNLL NG +GIAVGM T+IP HN+ Sbjct: 128 SKITLEMLRDINKDTIDFQPNYDGTEREPVVLPARFPNLLVNGATGIAVGMTTNIPPHNL 187 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ L+ NP+++ L+E I GPDFPTG I++ + I ++Y G+G +RA+ Sbjct: 188 GEVISGIHMLMKNPDVTTADLMEAIPGPDFPTGAIVM-GKSGIRKAYETGKGTVTLRAKV 246 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316 ++E G IVV E+PY V K+RLIE+IAEL K+I + D++DES + V Sbjct: 247 EIDEQANGKQQIVVHELPYMVNKARLIERIAELAREKKIEGITDVKDESDREGMRVTIDV 306 Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376 R + +++ +++ L+ M+T F NM + G P+++ L IL+ +L H+ EV+ RR+ Sbjct: 307 RRDVSASVVLNNLYKLTLMQTTFGFNMLAIVNG-TPKILSLKQILQYYLKHQEEVIRRRT 365 Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVDAILN 433 F ++ R IL+GL IA +ID II IIR P K +++ + L++ Q AIL+ Sbjct: 366 EFELKKAKARAHILEGLRIALDHIDAIINIIRGSQSPDVAKDRLMNEYQLSDKQAQAILD 425 Query: 434 LRLRSLRKLEEYQIKSE----------LDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483 +RL L LE ++++E +++LA+ E+ID + I E+ E++ Sbjct: 426 MRLVRLTGLERDKVENEYSKTMVAIADYEDILAKPERIDKI----------IYEELLEIQ 475 Query: 484 EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD---- 539 E F G R T V + + +IE+E + V +++ G+I+ L + Sbjct: 476 EKF------GDERRTELMVGEV-LSIEDEDLIEEENVVVTLTHNGYIKRLPTSDFKAQNR 528 Query: 540 ----LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPA 577 + + + D ++ L T D +L + GK Y + A Sbjct: 529 GGRGVQGMGVHDDDFIEHLLTTSTHDELLFFTNVGKVYRMKA 570 >gi|195978144|ref|YP_002123388.1| DNA gyrase subunit A [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|195974849|gb|ACG62375.1| DNA gyrase subunit A GyrA [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 831 Score = 392 bits (1008), Expect = e-107, Method: Compositional matrix adjust. Identities = 231/634 (36%), Positives = 374/634 (58%), Gaps = 43/634 (6%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 V+L ++ ++ YA+S I RA+PD+RDG KPVHRRI++ M+E+G+ KKSARI Sbjct: 9 VNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHKKSARIT 68 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+V+GK HPHGD S+Y+++VR+AQ + R+ L+ G GNFG++DGD AAA RYTEARM+++ Sbjct: 69 GDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTEARMSKI 128 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A +L+ ++++ VDF+D Y+ + EP+V P++FPNLL NG +GIAVGMAT+IP HN+ E Sbjct: 129 ALELLKDINKNTVDFQDNYDGNEREPLVLPARFPNLLVNGATGIAVGMATNIPPHNLAEA 188 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 +A +++NP+ + L+E + GPDFPTG +++ R I ++Y G+G +R+R +E Sbjct: 189 IDAVKMVMENPDCTTRDLMEVLPGPDFPTGALVM-GRSGIHKAYETGKGSIVLRSRTEIE 247 Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLFPKNR 318 G IVVTE PY + K+++ E I L RI + +RDES+ + VR V+ + R Sbjct: 248 TTSTGRERIVVTEFPYGINKTKVHEHIVRLAQENRIEGITAVRDESSRQGVRFVIEVR-R 306 Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378 ++++ ++F L+ ++T F NM + G +P+++ L I+ ++ H+++V+ RR+ F Sbjct: 307 DASANVILNNLFKLTSLQTNFSFNMLAIE-GGIPKILSLRQIIDNYILHQKDVITRRTQF 365 Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAILNLR 435 + R IL+GLLIA ++DE+IAIIRN + + ++SRF L+E Q AIL++R Sbjct: 366 DKDKAEARAHILEGLLIALDHLDEVIAIIRNSETDIIAQAELMSRFDLSERQSQAILDMR 425 Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495 LR L LE +I+SE D+LLA + +L ++ I E+ E+K ++ R Sbjct: 426 LRRLTGLERDKIQSEYDDLLALIADLADILAKPERIEAIIKEEMEEIKRKYANP-----R 480 Query: 496 RTTFC--EVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHF 545 RT EV + + +IE+E + + +SN G+I RS K + Sbjct: 481 RTELMVGEVL----SLEDEDLIEEEDVLITLSNNGYIKRLAQDEFRSQKRGGRGVQGTGV 536 Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLLSGRGHGEAI 590 + D ++ + T D +L + G+ Y LP NLL GE I Sbjct: 537 NDDDFVRELVSTSTHDTLLFFTNFGRVYRLKAYEIPEYGRAAKGLPVINLLK-LDDGETI 595 Query: 591 QLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAF 624 Q +I+ +DI+ + + +T + +V ++ + F Sbjct: 596 QTIINAK-KEDILDKYFFFTTKQGIVKRTEVSEF 628 >gi|313664968|ref|YP_004046839.1| DNA gyrase, A subunit [Mycoplasma leachii PG50] gi|312949632|gb|ADR24228.1| DNA gyrase, A subunit [Mycoplasma leachii PG50] Length = 834 Score = 392 bits (1008), Expect = e-107, Method: Compositional matrix adjust. Identities = 258/757 (34%), Positives = 414/757 (54%), Gaps = 37/757 (4%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + + + + + +L YA+S I RA+PDL+DG KPVHRRII+AM+++G+ KKSA Sbjct: 22 ISPIDISTEVRKDFLEYAMSVIVSRALPDLKDGLKPVHRRIIYAMNDLGITSDKPHKKSA 81 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 RIVGEVIGK HPHGD +VY+++VR+AQ F RYPLI G GNFG+IDGD AAA RYTEAR+ Sbjct: 82 RIVGEVIGKYHPHGDSAVYETMVRMAQEFSYRYPLIDGHGNFGSIDGDGAAAMRYTEARL 141 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 +++ +++ +D D V F D Y+ + EP PNLL NGT GIAVGMATSIP HN+ Sbjct: 142 AKISNYLIKDIDMDTVPFIDNYDASEHEPAYLTGYLPNLLVNGTMGIAVGMATSIPPHNL 201 Query: 197 QEICEAALALIDNPEISIEKLLE-YIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 +E+ A A IDN +I+I+++L+ YI+GPDFPTG ++ + + E Y+ GRG +RA+ Sbjct: 202 KEVVSAINAYIDNNDITIDEILDNYILGPDFPTGALMTNGTK-MREGYKTGRGSVIIRAK 260 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLF 314 EE + VVTEIPYQ K+++IEKIAEL+ K I + DIRDES E +RI++ Sbjct: 261 IDFEE-NKKHDRFVVTEIPYQTNKAKIIEKIAELVKDKTIEGIFDIRDESNYEGIRIIIE 319 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K + +PD+++ ++ + +++ F + + +P ++ L I+K ++ + V+ + Sbjct: 320 LK-KDANPDVVLSKLYKYTALQSSFSI-NLLTLNNNLPVLLDLKTIIKNYVEFQVNVIIK 377 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLTENQVDAI 431 RS F + +R IL+ L IA N+D++I II+N D+ K + ++++ E Q AI Sbjct: 378 RSIFEKNKLTKRYHILEALHIALDNVDDVINIIKNSKTSDEAKIQLTNKYNFDEEQNKAI 437 Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491 L++RL+ L LE +I E+ N+ +D L+N+ ++Q N + ++ E+ + F + Sbjct: 438 LDMRLQRLVGLERDKITLEMTNIKERLTYLDLLINTKEEQDNVLKNQLNEIADKFGDN-- 495 Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS-------ALH 544 RRT + + + +I +++S G+IR + + +++ Sbjct: 496 ---RRTELIDEELIN--IEDEELIPDLKWMILLSQEGYIRRINPDEFRIQKRGGRGVSVN 550 Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNH--NQDI 602 + D + IA D +L + GK Y N+ S + ++ LN ++D Sbjct: 551 VEPNDPIDIATMGKAKDWVLFFTNSGKVYRTKLYNIRSYSRTARGLPIVNFLNDLTSEDK 610 Query: 603 VTAFVYDSTCK-----LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657 +TA + K L V+ KG + SE R GK + + +++ V T Sbjct: 611 ITAILPLRNNKEKFNYLTFVTQKGMIKRTKISEFENINRNGKKAINLRENDQLISVFATT 670 Query: 658 G-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYK--DGGISDVICFKICEGLTWID 713 G D + + E+ K++ + SR G GVR + D + + FK+ +T + Sbjct: 671 GQDTIFIANESGKVIRIKESVVNPQSRVGSGVRALKLEANDVVVGAISSFKLTH-ITTVS 729 Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750 + G +D + R G G V R+GKF Sbjct: 730 NKGLFKKTPIDDY--RISGRNGKGIKVMNLNQRTGKF 764 >gi|163814982|ref|ZP_02206369.1| hypothetical protein COPEUT_01135 [Coprococcus eutactus ATCC 27759] gi|158449665|gb|EDP26660.1| hypothetical protein COPEUT_01135 [Coprococcus eutactus ATCC 27759] Length = 865 Score = 392 bits (1008), Expect = e-106, Method: Compositional matrix adjust. Identities = 235/643 (36%), Positives = 372/643 (57%), Gaps = 41/643 (6%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 V L+ +E Y+ YA+S I RA+PD+RDG KPV RRI+H+M E+ +K ARIV Sbjct: 13 VGLKKTMERSYIDYAMSVIAARALPDVRDGLKPVQRRILHSMIELNNGPDKPHRKCARIV 72 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+ +GK HPHGD S+Y++LV+LAQ + RYPL+ G GNFG++DGD AAA RYTEAR++++ Sbjct: 73 GDTMGKYHPHGDSSIYEALVKLAQEWNTRYPLVDGHGNFGSVDGDHAAAMRYTEARLSKI 132 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 + ++ +++D VDF ++ + EPVV PS++PNLL NGTSGIAVGMAT+IP HN++E Sbjct: 133 SMEMMADINKDTVDFIPNFDGTEKEPVVLPSRYPNLLVNGTSGIAVGMATNIPPHNLKET 192 Query: 200 CEAALALIDN-----PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 AA+ +IDN E I++L++ + GPDFPTG I+ R+ I ++YR GRG +VRA Sbjct: 193 IYAAIKIIDNRVNEDRETDIDELMDIVKGPDFPTGAQIL-GRQGINDAYRTGRGKIKVRA 251 Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314 +E + G I+VTE+PY V KS LI+ + +L+ KRI + DIRDES+ + V+ Sbjct: 252 ITEIETMTNGKHRIIVTELPYMVNKSLLIKNMVDLVKNKRIDGITDIRDESSREGMRVVI 311 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 + ++ ++++ +F + ++ F M L G VP+++ L +L +L H+ +V+ R Sbjct: 312 ELRKDVNANVILNQLFKHTQLQDTFGCIMLALVDG-VPKILNLKDMLTYYLKHQEDVVTR 370 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAI 431 R+ + + + R IL+G LIA NIDE+I IIRN + K ++ RF L+E Q AI Sbjct: 371 RTRYDLNKAEERAHILQGYLIALDNIDEVITIIRNSKNVGEAKAKLIERFGLSEAQAGAI 430 Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491 +++RLR+L LE +I++E + L A+ + +L + I E+ + + + Sbjct: 431 VDMRLRALTGLEREKIENEYNELKAKIAEYKEILADENKLLGVIKTELTAIADKYGDE-- 488 Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551 RRT+ S D T + +I++E I + ++ G+I+ + D + + G + Sbjct: 489 ---RRTSITAYS--DDIT-DEELIKREEIVISMTKLGYIKRMPK---DTFKVQNRGGKGI 539 Query: 552 K-----------IALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEAIQLLIDLNH 598 K +T + I+ + G+ Y + + SGR G AI L+ L Sbjct: 540 KGMNIIDNDIIDEIFLTNTHNFIMFFTNMGRVYRMKGYEIPESGRNARGVAIVNLLQLLP 599 Query: 599 NQDIVTAFV----YDSTCKLLVVSSKGNAFIVEESEIIANTRK 637 N+ VTA + +D K L++++K + E N RK Sbjct: 600 NEK-VTAIIPITGFDK--KYLMMATKNGIVKKTKIEAFENIRK 639 >gi|94988622|ref|YP_596723.1| DNA gyrase subunit A [Streptococcus pyogenes MGAS9429] gi|94992445|ref|YP_600544.1| DNA gyrase subunit A [Streptococcus pyogenes MGAS2096] gi|94542130|gb|ABF32179.1| DNA gyrase subunit A [Streptococcus pyogenes MGAS9429] gi|94545953|gb|ABF36000.1| DNA gyrase subunit A [Streptococcus pyogenes MGAS2096] Length = 828 Score = 392 bits (1008), Expect = e-106, Method: Compositional matrix adjust. Identities = 222/580 (38%), Positives = 353/580 (60%), Gaps = 26/580 (4%) Query: 12 LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71 + + N+ V+L ++ ++ YA+S I RA+PD+RDG KPVHRRI++ M+E+G+ Sbjct: 1 MQDRNLIDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKP 60 Query: 72 FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131 KKSARI G+V+GK HPHGD S+Y+++VR+AQ + R+ L+ G GNFG++DGD AAA RY Sbjct: 61 HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRY 120 Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191 TEARM+++A +L+ ++++ V+F+D Y+ + EPVV P++FPNLL NG +GIAVGMAT+I Sbjct: 121 TEARMSKIALELLRDINKNTVNFQDNYDGSEREPVVLPARFPNLLVNGATGIAVGMATNI 180 Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251 P HN+ E +A ++++P+ + +L+E I GPDFPTG +++ R I +Y G+G Sbjct: 181 PPHNLAESIDAVKMVMEHPDCTTRELMEVIPGPDFPTGALVM-GRSGIHRAYDTGKGSIV 239 Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVR 310 +R+R +E G IVVTE PY V K+++ E I L KR+ + +RDES+ E VR Sbjct: 240 LRSRTEIETTQTGRERIVVTEFPYGVNKTKVHEHIVRLAQEKRLEGITAVRDESSREGVR 299 Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370 V+ + R +++ ++F L+ ++T F NM + G VP+++ L I+ +++H++E Sbjct: 300 FVIEIR-REASATVILNNLFKLTSLQTNFSFNMLAIENG-VPKILSLRQIIDNYISHQKE 357 Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQ 427 V+ RR+ F + R IL+GLLIA ++DE+IAIIRN + + ++SRF L+E Q Sbjct: 358 VIIRRTQFDKDKAEARAHILEGLLIALDHLDEVIAIIRNSETDVIAQTELMSRFDLSERQ 417 Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487 AIL++RLR L LE +I+SE D+LLA + L ++ I E+ E+K ++ Sbjct: 418 SQAILDMRLRRLTGLERDKIQSEYDDLLALIADLSDTLAKPERIITIIKEEMDEIKRKYA 477 Query: 488 KSTDLGRRRTTFC--EVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHS 537 RRT EV + + +IE+E + + +SN+G+I+ L K Sbjct: 478 NP-----RRTELMVGEVL----SLEDEDLIEEEDVLITLSNKGYIKRLAQDEFRAQKRGG 528 Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPA 577 + D ++ + T D +L + G+ Y L A Sbjct: 529 RGVQGTGVNNDDFVRELVSTSTHDTLLFFTNFGRVYRLKA 568 >gi|55377341|ref|YP_135191.1| DNA gyrase subunit A [Haloarcula marismortui ATCC 43049] gi|55230066|gb|AAV45485.1| DNA gyrase subunit A [Haloarcula marismortui ATCC 43049] Length = 814 Score = 392 bits (1008), Expect = e-106, Method: Compositional matrix adjust. Identities = 261/712 (36%), Positives = 410/712 (57%), Gaps = 49/712 (6%) Query: 7 SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66 +N E ++ V + +E+ Y+ YA+S I RA+PD+RDG KPVHRRI++AM EMG+ Sbjct: 5 ANDANAPAERIEHVRIEDEMEQSYIDYAMSVIAGRALPDVRDGLKPVHRRILYAMHEMGV 64 Query: 67 DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126 A +KS+ IVG+ +G HPHG ++YD+LVR+AQ F RYPLI GQGNFG++DGD A Sbjct: 65 SSNTAHRKSSSIVGDTMGDYHPHGGSAIYDTLVRMAQDFSMRYPLIDGQGNFGSMDGDPA 124 Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186 AA RYTEARM +AE +L+ +++D VDF Y++ EP V PSK PNLL NG+SGIAVG Sbjct: 125 AAMRYTEARMDPLAEELLKDIEKDTVDFSSNYDDRLQEPDVLPSKVPNLLLNGSSGIAVG 184 Query: 187 MATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLG 246 M+T+IP HN+ E+ +A + L+ NP+ ++E L+E+I GPDFPTGG IV R++I +Y G Sbjct: 185 MSTNIPPHNLGELVDATVHLLGNPDCTVEDLMEHIKGPDFPTGGNIV-GRDAIYSAYATG 243 Query: 247 RGGFRVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305 RG RVRA + V+ E GR IV++E+PYQ K+R++E+IA+ + +I + D+RDES Sbjct: 244 RGRLRVRAEYEVDPEEGR----IVISELPYQENKARVVERIADDVNEGKIEGISDLRDES 299 Query: 306 AED-VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364 + VRIV+ K R + D++ E+ + +E+ F + +N+ + P+V+ L L+ + Sbjct: 300 DRNGVRIVVELK-RGANIDVV-ENRLLDHHLESTFGV-INLALVDGQPKVLSLKESLQHY 356 Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRF 421 + HRREV+ RRS + + + R IL+G L A N+++++ +IRN D + + F Sbjct: 357 IDHRREVVRRRSEYDLAEAEDRAHILEGRLKALENVEDVVELIRNREDRDAARTGLQESF 416 Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481 +E Q I+ ++L SL +E +I+ E +++ + ++S+LNS ++ + IA E++E Sbjct: 417 DFSEEQAAHIVRMQLGSLTSMEAAEIEDEYEDVQNTIDYLESVLNSREKLDSVIADELQE 476 Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD-- 539 VK+ + RRT+ E + + +I +E VVI+ +I+ + + D Sbjct: 477 VKDDYDDD-----RRTSIIE---DEGQVTHEDLIPEEDCVVVITEDDYIKRMPVENFDPQ 528 Query: 540 ------LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQ 591 + KE D + A++ D +L + G+ Y L + +S G++ Sbjct: 529 NRGGKGIIGADPKENDRVSKVFRANSHDYLLCFTNQGQVYRLKTYEIPEMSRTARGKSAI 588 Query: 592 LLIDLNHNQDIVTAFVY-----DSTCKLLVVSSKGNAFI----VEESEIIANTRKGKTFL 642 LIDL+ +++ TA V D C +V N ++ E E I +T L Sbjct: 589 NLIDLDDGEEL-TAVVSTDEFGDDECITMVTR---NGYVKRTCCSEFENILSTGIIAAKL 644 Query: 643 KVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRG----KGVRLQ 690 + S E V TGD V + E + FS ++ EM R G++LQ Sbjct: 645 EDSDELIDVDVTDGTGDLV-IATEAGMTIRFSESEVSEMGRSARGVNGIKLQ 695 >gi|116513234|ref|YP_812140.1| DNA gyrase, A subunit [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|116092549|gb|ABJ57702.1| DNA gyrase subunit A [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] Length = 823 Score = 392 bits (1008), Expect = e-106, Method: Compositional matrix adjust. Identities = 219/628 (34%), Positives = 370/628 (58%), Gaps = 38/628 (6%) Query: 6 ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65 + N N + ++ V L + +L YA+S I RA+PD+RDG KPV RRI++ M+E+G Sbjct: 1 MDNENQGQDRRIRNVDLTQMMRSSFLDYAMSVIVARALPDVRDGLKPVQRRILYGMNELG 60 Query: 66 LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125 + +KKSARIVG+V+GK HPHGD S+Y ++ +AQ F RY L+ G GNFG++DGD Sbjct: 61 VTPDKPYKKSARIVGDVMGKYHPHGDSSIYLAMAHMAQDFAYRYMLVDGHGNFGSVDGDR 120 Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185 AA RYTEARM+++A +L+ ++++ VD++ Y++ ++EP V P++ PNLL NG+SGIAV Sbjct: 121 PAAMRYTEARMSKIAVEMLRDINKNTVDWQRNYDDTENEPTVLPARIPNLLVNGSSGIAV 180 Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245 GM T+IP HN+ E+ L+ NP+++ ++L++ I GPDFPTGGI++ R ++ +Y Sbjct: 181 GMTTNIPPHNLSEVISGIHMLMKNPDVTTKELMKAIPGPDFPTGGILM-GRGGVLHAYES 239 Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305 G+G VRA+ +E G I+V+EIPY V K+ L++KIAEL K I + +RDES Sbjct: 240 GKGNIVVRAKTEIETEKSGRERIIVSEIPYLVNKAELVQKIAELARDKVIDGITGVRDES 299 Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365 + + R +++ ++F + M++ F +NM + G P+ + L +L+ +L Sbjct: 300 DQSGMRITIDVRRDASASVVLNNLFKETQMQSNFAMNMVAIVDG-APKFLTLKQMLQYYL 358 Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFS 422 AH+ +V+ RR+ F ++ + R IL+GL +A +IDEI+++IRN D K ++SRF Sbjct: 359 AHQEDVITRRTKFDLEKAEARAHILEGLRVALDHIDEIVSLIRNSESSDIAKAGLISRFD 418 Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482 L + Q AIL++RL L LE +++ E LL + +L ++ I E+ ++ Sbjct: 419 LDDRQAQAILDMRLVRLTGLERDKVEGEYQELLVKIADYKDILAKPERIDQIIYDELLDI 478 Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSL-----KSH 536 ++ F +RRT +++ ++ T++ + +IE++ + + +S++G+++ + K+ Sbjct: 479 QKRFGD-----KRRT---QITASEVVTIEDEDLIEEQDVLLTLSHQGYVKRMLIDDFKTQ 530 Query: 537 S---VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAG 578 + + + ++GD ++ L++ T D + + GK Y LP Sbjct: 531 NRGGRGIKGMGVQKGDFIEHLLYSSTHDYLFFYTNKGKVYMKKAYEIPEYGRSAKGLPIV 590 Query: 579 NLLSGRGHGEAIQLLIDLNHNQDIVTAF 606 NLL GE IQ +++L D AF Sbjct: 591 NLLQ-LDKGEHIQTVVNLPQGHDDDYAF 617 >gi|167770846|ref|ZP_02442899.1| hypothetical protein ANACOL_02199 [Anaerotruncus colihominis DSM 17241] gi|167666886|gb|EDS11016.1| hypothetical protein ANACOL_02199 [Anaerotruncus colihominis DSM 17241] Length = 857 Score = 392 bits (1008), Expect = e-106, Method: Compositional matrix adjust. Identities = 224/629 (35%), Positives = 369/629 (58%), Gaps = 29/629 (4%) Query: 12 LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71 L+E+ + V + ++ +L Y++S I RA+PD+RDG KPVHRRI++ + E GL Sbjct: 19 LIEQRIHNVDIEHEMKRSFLDYSMSVIVSRALPDVRDGLKPVHRRILYTLHENGLTPDKP 78 Query: 72 FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131 ++K A VG V+G+ HPHGD SVYD++VRLAQ F RYPL+ G GNFG++DGD AAYRY Sbjct: 79 YRKCADTVGSVLGRYHPHGDASVYDAMVRLAQDFSMRYPLVDGHGNFGSVDGDPPAAYRY 138 Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191 TE+RM++++ +L ++++ VDF Y++ EP V PS+FPNLL NG++GIAVGMAT+I Sbjct: 139 TESRMSKMSLSMLTDIEKETVDFTGNYDDRLQEPTVLPSRFPNLLCNGSTGIAVGMATNI 198 Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251 P HN+ E+ +A LIDNP+ +++++++I GPDFPTGG+I+ R I +Y GR Sbjct: 199 PPHNLGEVIDAVNLLIDNPDAGLDEIMQHIKGPDFPTGGVIM-GRAGIRAAYATGRARLT 257 Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311 +RAR +EE+ G IVVTEIPY V K+RLIE IA+L+ KRI + D+RDES D Sbjct: 258 LRARTEIEEMANGRERIVVTEIPYMVNKARLIESIADLVKDKRIDQISDLRDESDRDGMR 317 Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371 ++ R + +++ ++ S ++ + M L +G VP+VMPL +L ++ + E+ Sbjct: 318 IVIELKRDANAQVVLNRLYSYSQLQDTVGVIMLAL-VGGVPKVMPLKDVLTHYIDFQGEI 376 Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN-EDKP--KPVMVSRFSLTENQV 428 + RR+ + ++ R IL+GL + N DE+I+IIR+ +D+P K +++RF +T+ Q Sbjct: 377 VTRRTKYDLRRAKEREHILEGLKLVCDNTDEVISIIRHSKDRPDSKVNLIARFGITDIQA 436 Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488 AI+ ++L L LE +I+ EL +L ++ +++L + + + E+ ++ ++ Sbjct: 437 TAIVAMQLGQLSGLERIRIEEELAKILERVKEYEAILGDYTRVMSIVKEELGVLRAKYAD 496 Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDL 540 RRT VS + +I E + +++ G++ R+ + + Sbjct: 497 E-----RRTEIVAVS---GEVDIEDLIPVEDCVITLTHFGYLKRQPVDAYRTQRRGGRGV 548 Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNH 598 S + +E D ++ T D I+ ++ G+ + L + G G I L+ ++ Sbjct: 549 SGMTRREEDFVEELFICSTHDFIMFFTSKGRCFRLKGYEISEGSRTSRGTNIVNLLSMDS 608 Query: 599 NQDI-----VTAFVYDSTCKLLV-VSSKG 621 ++ + VT Y+ + LV V+ KG Sbjct: 609 DEKVTALIKVTPDEYEREDRCLVMVTRKG 637 >gi|322513992|ref|ZP_08067067.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Actinobacillus ureae ATCC 25976] gi|322120218|gb|EFX92176.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Actinobacillus ureae ATCC 25976] Length = 895 Score = 392 bits (1007), Expect = e-106, Method: Compositional matrix adjust. Identities = 239/606 (39%), Positives = 352/606 (58%), Gaps = 55/606 (9%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 +++ VS+ L+ YL YA+S I RA+PD+RDG KPVHRR++ +M + F + K Sbjct: 6 KDITPVSIEDELKTSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQNSNTFNRSHVK 65 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 SAR+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG+IDGD+ AA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRYTEV 125 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 RM ++ + +L +D++ VD+ Y+ ++ P V P+K P LL NG+SGIAVGMAT+IP H Sbjct: 126 RMQKITQELLTDLDKETVDYSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATNIPPH 185 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 N+ E+ + LA I+N EISIE+L+ +I GPDFPTG II R+ I E+YR GRG VRA Sbjct: 186 NLNEVLDGCLAYIENEEISIEELMRFIPGPDFPTGAII-NGRKGIEEAYRTGRGKVYVRA 244 Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314 + VE +G I+VTE+PYQV K++LIEKIAEL+ K+I + I+D S + ++ Sbjct: 245 KASVETTEKGREQIIVTELPYQVNKAKLIEKIAELVKDKKIEGISGIQDHSDKKGISIVI 304 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 R ++++ ++ L+ M+ F +NM L G+ P+V+ L I++ ++ HRREV+ R Sbjct: 305 EVKRDAVGEVVLNHLYSLTQMQVTFGINMVALDHGQ-PKVLNLKQIIEAFVKHRREVVTR 363 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN------------------------- 409 R+ F ++ R IL+GL IA NID +I +IRN Sbjct: 364 RTIFELRKARERAHILEGLAIALANIDPVIELIRNSKTADEAREGLLARAWALGNVAPML 423 Query: 410 ----------EDKPKPVMV--SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457 ED P+ + V ++ L+E Q AIL LRL L LE +I E LL E Sbjct: 424 EAAGVDASRPEDLPENLGVRDGQYYLSEAQARAILELRLHRLTGLEHEKIVDEYRALLTE 483 Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517 ++ +L+S ++ I E+ +VK F RRT E++ A + +I + Sbjct: 484 IGELLHILSSAERLMEVIREELEKVKAEFGDE-----RRT---EITAASGDINMEDLIAQ 535 Query: 518 EPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569 E + V +S+ G+++ + + SA KE D ++ L +T D IL S+ Sbjct: 536 EDVVVTLSHAGYVKYQPLSDYEAQRRGGKGKSATKMKEDDFIEKLLVVNTHDTILCFSSR 595 Query: 570 GKAYTL 575 G+ Y L Sbjct: 596 GRLYQL 601 >gi|94990497|ref|YP_598597.1| DNA gyrase subunit A [Streptococcus pyogenes MGAS10270] gi|94544005|gb|ABF34053.1| DNA gyrase subunit A [Streptococcus pyogenes MGAS10270] Length = 828 Score = 392 bits (1007), Expect = e-106, Method: Compositional matrix adjust. Identities = 222/580 (38%), Positives = 354/580 (61%), Gaps = 26/580 (4%) Query: 12 LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71 + + N+ V+L ++ ++ YA+S I RA+PD+RDG KPVHRRI++ M+E+G+ Sbjct: 1 MQDRNLIDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKP 60 Query: 72 FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131 KKSARI G+V+GK HPHGD S+Y+++VR+AQ + R+ L+ G GNFG++DGD AAA RY Sbjct: 61 HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHLLVDGHGNFGSMDGDGAAAQRY 120 Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191 TEARM+++A +L+ ++++ V+F+D Y+ + EPVV P++FPNLL NG +GIAVGMAT+I Sbjct: 121 TEARMSKIALELLRDINKNTVNFQDNYDGSEREPVVLPARFPNLLVNGATGIAVGMATNI 180 Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251 P HN+ E +A ++++P+ + +L+E I GPDFPTG +++ R I +Y G+G Sbjct: 181 PPHNLAESIDAVKMVMEHPDCTTRELMEVIPGPDFPTGALVM-GRSGIHRAYDTGKGSIV 239 Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVR 310 +R+R +E G IVVTE PY V K+++ E I L KR+ + +RDES+ E VR Sbjct: 240 LRSRTEIETTQTGRERIVVTEFPYGVNKTKVHEHIVRLAQEKRLEGITAVRDESSREGVR 299 Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370 V+ + R +++ ++F L+ ++T F NM + G VP+++ L I+ +++H++E Sbjct: 300 FVIEIR-REASATVILNNLFKLTSLQTNFSFNMLAIENG-VPKILSLRQIIDNYISHQKE 357 Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQ 427 V+ RR+ F + R IL+GLLIA ++DE+IAIIRN + + ++SRF L+E Q Sbjct: 358 VIIRRTRFDKDKAEARAHILEGLLIALDHLDEVIAIIRNSETDVIAQTELMSRFDLSERQ 417 Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487 AIL++RLR L LE +I+SE D+LLA + +L ++ I E+ E+K ++ Sbjct: 418 SQAILDMRLRRLTGLERDKIQSEYDDLLALIADLSDILAKPERIITIIKEEMDEIKRKYA 477 Query: 488 KSTDLGRRRTTFC--EVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHS 537 RRT EV + + +IE+E + + +SN+G+I+ L K Sbjct: 478 NP-----RRTELMVGEVL----SLEDEDLIEEEDVLITLSNKGYIKRLAQDEFRAQKRGG 528 Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPA 577 + D ++ + T D +L + G+ Y L A Sbjct: 529 RGVQGTGVNNDDFVRELVSTSTHDTLLFFTNFGRVYRLKA 568 >gi|86607511|ref|YP_476273.1| type II DNA topoisomerase, A subunit [Synechococcus sp. JA-2-3B'a(2-13)] gi|86556053|gb|ABD01010.1| type II DNA topoisomerase, A subunit [Synechococcus sp. JA-2-3B'a(2-13)] Length = 819 Score = 392 bits (1007), Expect = e-106, Method: Compositional matrix adjust. Identities = 238/684 (34%), Positives = 378/684 (55%), Gaps = 29/684 (4%) Query: 22 LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81 L+ ++ YL YA+S I RA+PD+RDG KPVHRRI++AM E+GL ++K AR+VG+ Sbjct: 6 LQGEMQRSYLEYAMSVIVGRALPDVRDGLKPVHRRILYAMHELGLTPDRPYRKCARVVGD 65 Query: 82 VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE 141 V+GK HPHGDQ+VYD+LVR+ Q F RYPL++G GNFG++D D AA RYTE R+ +++ Sbjct: 66 VLGKYHPHGDQAVYDALVRMVQDFSSRYPLVAGHGNFGSVDDDPPAAMRYTECRLAELSH 125 Query: 142 L-ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200 +L+ V E+ VDF ++ +EP V P++ P LL NG+SGIAVGMAT+IP HN+ E+ Sbjct: 126 TALLEQVSEEIVDFMPNFDGSQAEPTVLPARLPILLLNGSSGIAVGMATNIPPHNLGEVV 185 Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEE 260 + LALID+P++S E+LL +I GPDFPTGG I+++ + I +Y GRG +R EE Sbjct: 186 DGLLALIDHPDLSPEELLRWIPGPDFPTGGQILDT-QGIRAAYLTGRGSITLRGVARFEE 244 Query: 261 V--GRGSW---CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315 + G+G +V++E PYQV K+ IEK+AEL RI + D+RDES V+ Sbjct: 245 IQPGKGRHRRPALVISEFPYQVNKAAWIEKVAELANQDRISGIADLRDESDRSGIRVVVE 304 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 R +P +++ ++ L+ +++ F + L G P+ + L IL+ +L R L R Sbjct: 305 LKREANPQAVLQQLYKLTPLQSNFGAILLALVNGE-PRQLSLKEILQHFLQFREATLNRM 363 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAIL 432 +Q + R+ E + G+L+A +++ +I ++R K + +R T Q + IL Sbjct: 364 FRAELQQVQRKAEEVAGMLLALADLEGVIELLRQAPDGTTAKAQLQTRLGCTPQQAETIL 423 Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492 + LR L LE ++ E L E++ LL+ ++ N + E+R +K+ F Sbjct: 424 AMPLRRLTGLERERLHQEHAQLQTRIEELQGLLSDRRKLLNYLKKELRHLKKTFGDP--- 480 Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPIT---VVISNRGWIR--SLKSHSVDLSALHFKE 547 RRT S + Q E+ T + + +G++R L S + + Sbjct: 481 --RRTQILSASELEAEVAQIPSGEETEETHFLLQFTRKGYVRRLPLPSRRSRSNPAQREL 538 Query: 548 GDSLKIALHAHTTDR-ILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606 G+ + + L T ++ IL+L+ GKA+TLP + G + L+ L + + IV F Sbjct: 539 GEDVLVGLECVTLEQEILVLTAGGKAFTLPIAGIPLSTGSSRGVPLVTLLPNPEPIVATF 598 Query: 607 VYD---STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH--- 660 D L+V+S +G + +E++ T++G T LK+ +++ DH Sbjct: 599 TLDPDPGKASLVVLSRQGRIKRLALAELMGLTQRGSTVLKLKEGDELGWAALWDPDHQGY 658 Query: 661 -VAVVGENRKLLIFSIDQIPEMSR 683 V + ++L + QIP M R Sbjct: 659 SVVLATSGGRVLRLDVQQIPLMGR 682 >gi|166154399|ref|YP_001654517.1| DNA gyrase subunit A [Chlamydia trachomatis 434/Bu] gi|166155274|ref|YP_001653529.1| DNA gyrase subunit A [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|301335658|ref|ZP_07223902.1| DNA gyrase subunit A [Chlamydia trachomatis L2tet1] gi|165930387|emb|CAP03880.1| DNA gyrase subunit A [Chlamydia trachomatis 434/Bu] gi|165931262|emb|CAP06834.1| DNA gyrase subunit A [Chlamydia trachomatis L2b/UCH-1/proctitis] Length = 836 Score = 392 bits (1007), Expect = e-106, Method: Compositional matrix adjust. Identities = 233/593 (39%), Positives = 343/593 (57%), Gaps = 26/593 (4%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 EE + +L ++E YL Y++S I RA+PD RDG KP RRI++AM ++ L G + Sbjct: 5 EEIIVPKNLEEEMKESYLRYSMSVIISRALPDARDGLKPSQRRILYAMKQLNLTPGVKHR 64 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 K A+I G+ G HPHG+ +Y +LVR+AQ + RYPL+ GQGNFG+IDGD AAA RYTE Sbjct: 65 KCAKICGDTSGDYHPHGESVIYPTLVRMAQDWAMRYPLVDGQGNFGSIDGDPAAAMRYTE 124 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 AR+T A +L+ +D+D VD Y+E EPVVFPSKFPNLL NG+SGIAVGMAT+IP Sbjct: 125 ARLTHSAIFLLEDLDKDTVDMVPNYDETKYEPVVFPSKFPNLLCNGSSGIAVGMATNIPP 184 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E+ EA L ++ N + SIE +LE + GPDFPTGGII + E I +Y GRG R+R Sbjct: 185 HNLGELIEATLLVLANSQTSIEDILEVMPGPDFPTGGIICGT-EGIRSTYYTGRGKLRLR 243 Query: 254 ARWCVEE-VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRI 311 AR VEE + I++TE+PY V KSRLIE+IAELI K + + D+RDES +D +R+ Sbjct: 244 ARMHVEENSDKQRENIILTEMPYNVNKSRLIEQIAELINEKTLTGISDVRDESDKDGIRV 303 Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371 VL K + ++++ ++ +D++ F NM L +P+ M + ++ W+ HR +V Sbjct: 304 VLELK-KGESSEVVINRLYKFTDVQVTFGANMLALDKN-LPRTMNIHRMISAWIRHRMDV 361 Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQV 428 + RR+ + + + R IL+G L A +DE++ IR N++ K +V FS +E Q Sbjct: 362 IRRRTRYELNKAEARAHILEGFLKALSCMDEVVKTIRESSNKEHAKQQLVELFSFSEAQA 421 Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488 AIL LRL L LE +++ E LL + +L + + I E++E+ ++ Sbjct: 422 LAILELRLYQLTGLEADKVQKEYSELLEKITYYRKVLAEEELVKDIIREELQELHKVHKT 481 Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSVDL 540 R T E+ D ++ +I E + + IS +++ + K + Sbjct: 482 P------RRTKIEMDTGDVRDIED-IISDESVIITISGDDYVKRMPVKVFREQKRGGQGV 534 Query: 541 SALHFKEG-DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAI 590 + K+G D LK A T D +L+ + G+ Y L L G R G+ I Sbjct: 535 TGFDMKKGSDFLKAVYSASTKDYLLIFTNFGQCYWLKVWQLPEGERRAKGKPI 587 >gi|304385860|ref|ZP_07368204.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Pediococcus acidilactici DSM 20284] gi|304328364|gb|EFL95586.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Pediococcus acidilactici DSM 20284] Length = 843 Score = 392 bits (1007), Expect = e-106, Method: Compositional matrix adjust. Identities = 230/623 (36%), Positives = 363/623 (58%), Gaps = 39/623 (6%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 V+L + +L YA+S I RA+PD+RDG KPVHRRI++ M+E+G+ +KKSARIV Sbjct: 12 VNLSNQMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPEKPYKKSARIV 71 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+V+GK HPHGD ++Y+S+VR+AQ F RY L+ G GNFG++DGD AAA RYTEARM+++ Sbjct: 72 GDVMGKYHPHGDSAIYESMVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAMRYTEARMSKI 131 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 +L+ ++++ VDF++ Y+ + EP V PS+FPNLL NG +GIAVGM T+IP HN+ E+ Sbjct: 132 TLEMLRDINKNTVDFQENYDGTEREPSVLPSRFPNLLVNGATGIAVGMTTNIPPHNLSEV 191 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 A L++N + + L+E + GPDFPTGGI++ + I ++Y GRG +RA+ +E Sbjct: 192 IAAIHILMNNEDATTADLMEALPGPDFPTGGIVM-GKSGIRKAYETGRGTIILRAKVDIE 250 Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319 G IV TE+PY V K++LIE+IAEL KRI + D+ DES D V+ R Sbjct: 251 TEKNGRERIVATELPYMVNKAKLIERIAELARDKRIEGITDVNDESDRDGLRVVIDVRRD 310 Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379 + +++ +++ ++ M+T F NM + G P+V+ L IL+ +L H+ EV+ RR+ F Sbjct: 311 VSASVVLNNLYKMTLMQTTFGFNMLAIVNG-APKVLSLKQILQYYLQHQEEVVRRRTEFD 369 Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAILNLRL 436 ++ + R IL+GL IA +IDEIIAIIR K +++ +SL+ Q AIL++RL Sbjct: 370 LKKAEARAHILEGLRIALDHIDEIIAIIRGSQTAEVAKDQLMNNYSLSSKQAQAILDMRL 429 Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496 L LE +++ E ++A +L ++ I E+ E++E F G R Sbjct: 430 VRLTGLEREKVEDEYRKVMAAIADYRDILAHTERIHEIIYNELLEIQEKF------GDER 483 Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD--------LSALHFKEG 548 T V + + +IE+E + V +++ G+I+ + + + + E Sbjct: 484 RTELMVGEV-LSLEDEDLIEEEDVMVTLTHNGYIKRMPTSEFKTQNRGGRGIQGMGVHED 542 Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTL---------------PAGNLLSGRGHGEAIQLL 593 D ++ + T D +L + GK Y + P NLL G GE+IQ + Sbjct: 543 DFIEHLVSTSTHDVLLFFTNAGKVYRMKGYEIPEYSRTAKGIPVINLL-GIDSGESIQAV 601 Query: 594 IDL---NHNQDIVTAFVYDSTCK 613 I++ N ++D +++ +T + Sbjct: 602 INIGRGNGDEDNEHRYLFFTTLQ 624 >gi|270289887|ref|ZP_06196113.1| DNA gyrase, A subunit [Pediococcus acidilactici 7_4] gi|270281424|gb|EFA27256.1| DNA gyrase, A subunit [Pediococcus acidilactici 7_4] Length = 843 Score = 392 bits (1007), Expect = e-106, Method: Compositional matrix adjust. Identities = 230/623 (36%), Positives = 363/623 (58%), Gaps = 39/623 (6%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 V+L + +L YA+S I RA+PD+RDG KPVHRRI++ M+E+G+ +KKSARIV Sbjct: 12 VNLSNQMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPEKPYKKSARIV 71 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+V+GK HPHGD ++Y+S+VR+AQ F RY L+ G GNFG++DGD AAA RYTEARM+++ Sbjct: 72 GDVMGKYHPHGDSAIYESMVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAMRYTEARMSKI 131 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 +L+ ++++ VDF++ Y+ + EP V PS+FPNLL NG +GIAVGM T+IP HN+ E+ Sbjct: 132 TLEMLRDINKNTVDFQENYDGTEREPSVLPSRFPNLLVNGATGIAVGMTTNIPPHNLSEV 191 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 A L++N + + L+E + GPDFPTGGI++ + I ++Y GRG +RA+ +E Sbjct: 192 IAAIHILMNNEDATTADLMEALPGPDFPTGGIVM-GKSGIRKAYETGRGTIILRAKVDIE 250 Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319 G IV TE+PY V K++LIE+IAEL KRI + D+ DES D V+ R Sbjct: 251 TEKNGRERIVATELPYMVNKAKLIERIAELARDKRIEGITDVNDESDRDGLRVVIDVRRD 310 Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379 + +++ +++ ++ M+T F NM + G P+V+ L IL+ +L H+ EV+ RR+ F Sbjct: 311 VSASVVLNNLYKMTLMQTTFGFNMLAIVNG-APKVLSLKQILQYYLQHQEEVVRRRTEFD 369 Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAILNLRL 436 ++ + R IL+GL IA +IDEIIAIIR K +++ +SL+ Q AIL++RL Sbjct: 370 LKKAEARAHILEGLRIALDHIDEIIAIIRGSQTAEVAKDQLMNNYSLSSKQAQAILDMRL 429 Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496 L LE +++ E ++A +L ++ I E+ E++E F G R Sbjct: 430 VRLTGLEREKVEDEYRKVMAAIADYRDILAHTERIHEIIYNELLEIQEKF------GDER 483 Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD--------LSALHFKEG 548 T V + + +IE+E + V +++ G+I+ + + + + E Sbjct: 484 RTELMVGEV-LSLEDEDLIEEEDVMVTLTHNGYIKRMPTSEFKTQNRGGRGIQGMGVHED 542 Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTL---------------PAGNLLSGRGHGEAIQLL 593 D ++ + T D +L + GK Y + P NLL G GE+IQ + Sbjct: 543 DFIEHLVSTSTHDVLLFFTNAGKVYRMKGYEIPEYSRTAKGIPVINLL-GIDSGESIQAV 601 Query: 594 IDL---NHNQDIVTAFVYDSTCK 613 I++ N ++D +++ +T + Sbjct: 602 INIGRGNGDEDNEHRYLFFTTLQ 624 >gi|329944734|ref|ZP_08292813.1| DNA gyrase, A subunit [Actinomyces sp. oral taxon 170 str. F0386] gi|328529870|gb|EGF56760.1| DNA gyrase, A subunit [Actinomyces sp. oral taxon 170 str. F0386] Length = 893 Score = 392 bits (1007), Expect = e-106, Method: Compositional matrix adjust. Identities = 236/666 (35%), Positives = 376/666 (56%), Gaps = 42/666 (6%) Query: 9 SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68 ++ + E ++ V L+ ++ YL YA+S I RA+PD+RDG KPVHRR+++AM + G Sbjct: 15 TDVVTPERIQPVDLQMEMQRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMYDGGYRP 74 Query: 69 GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128 A+F KS+R+VGEV+G HPHGD ++YD+L RL Q + RYPL++GQGNFG AA Sbjct: 75 TASFSKSSRVVGEVMGNYHPHGDSAIYDALARLVQWWSMRYPLVAGQGNFGTPGNLGPAA 134 Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188 RYTE +M +A +L+ +DED+VDF+D Y+ ++ EPV+ P++FPNLL NG+ GIAVGMA Sbjct: 135 PRYTECKMAPLAMEMLRDIDEDSVDFQDNYDGKNQEPVILPARFPNLLVNGSEGIAVGMA 194 Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYII----GPDFPTGGIIVESRESIVESYR 244 T IP HN++EI A +++P+ S E+LL+ +I GPDFPTG I+ R I ++YR Sbjct: 195 TRIPPHNLREIARGAQWYLEHPDASREELLDALIERIPGPDFPTGATIL-GRRGIEDAYR 253 Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304 GRG RA VEE+ +G C+VVTE+PYQV L +KIA+L+ ++ + DIRDE Sbjct: 254 TGRGSITQRAVVNVEEI-QGRQCLVVTELPYQVNPDNLADKIAQLVRDGQVTGIADIRDE 312 Query: 305 SAEDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362 ++ R+V+ K R +++ +++ + ++ FP NM L G VP+ + LDG ++ Sbjct: 313 TSGRTGQRLVIVLK-RDAVAKVVLNNLYKRTQLQDNFPANMLALVDG-VPRTLSLDGFVR 370 Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVS 419 W++H+ +V+ RRS FR++ + R+ IL+GLL A +D +IA+IR ++ + ++ Sbjct: 371 HWVSHQIDVIVRRSRFRLRKAEERLHILEGLLKAIDALDAVIALIRRSPTTEEARTGLMG 430 Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479 + E Q +AIL+L+LR L LE +I+ E + L A + + ++ S ++Q ++ E+ Sbjct: 431 LLDVDEAQAEAILSLQLRRLAALERLKIQQESEELRARVKDLREIIASPERQRGIVSDEL 490 Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV- 538 E+ E + RRT D + +I +E + V I+ G+ + ++ S Sbjct: 491 AEIVEKYGDE-----RRTRIVPF---DGEMSMEDLIPEEDVVVTITRSGYAKRTRTDSYR 542 Query: 539 -------DLSALHFKEGDSLKIALHAHTTDRILLLSTD------GKAYTLPAGNLLSGRG 585 + +E D + TT R LL T+ K Y LP G S Sbjct: 543 SQHRGGKGIRGATLREDDVVD-HFFVTTTHRWLLFFTNYGRVYRAKGYELPEGGRDS--- 598 Query: 586 HGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFL 642 G+ + L+ ++I YD L++ + +G SE +N G + Sbjct: 599 KGQHVANLLAFQPGEEIAQVMELQDYDQADFLVLATRRGLVKKTRLSEYNSNRSGGVIAI 658 Query: 643 KVSSEE 648 + +E Sbjct: 659 NLRQDE 664 >gi|94971797|ref|YP_593845.1| DNA gyrase subunit A [Candidatus Koribacter versatilis Ellin345] gi|94553847|gb|ABF43771.1| DNA gyrase subunit A [Candidatus Koribacter versatilis Ellin345] Length = 865 Score = 392 bits (1007), Expect = e-106, Method: Compositional matrix adjust. Identities = 223/621 (35%), Positives = 362/621 (58%), Gaps = 44/621 (7%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 +N++ +++ ++ YL Y++S I RA+PD+RDG KPVHRRI++AM +MGL K Sbjct: 21 QNIQPINIEEEMKRSYLDYSMSVIIGRALPDVRDGLKPVHRRILYAMHDMGLLHNRKHVK 80 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 A++VGEV+GK HPHGD +VYD++VR+AQ F RYPL+ GQGNFG++DGD AAYRYTEA Sbjct: 81 CAKVVGEVLGKYHPHGDSAVYDAMVRMAQDFSLRYPLVDGQGNFGSVDGDPPAAYRYTEA 140 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 RMT +AE +L +D+D VDF +++ +EP++ P+K PNLL NG++GIAVGMAT+IP H Sbjct: 141 RMTAIAEELLADIDKDTVDFVANFDDTSAEPLLLPTKVPNLLINGSNGIAVGMATNIPPH 200 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 N+ EI +A + +++NP+ +++ +L+++ GPDFPTGG I + I +Y+ GRG F +RA Sbjct: 201 NLTEIVDACITIVNNPKSTLDDVLKFVQGPDFPTGGFI-HGKGGIKNAYQNGRGRFMMRA 259 Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314 + VE + IVVTEIPYQV KS LI+KIA+L+ K I + D+RDES D ++ Sbjct: 260 KVAVEHLPNKD-AIVVTEIPYQVNKSTLIKKIADLVNDKTIDEISDVRDESDRDGMRIVI 318 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 RS P++++ ++ + M+ F + + + + P+ M L L ++ HR +V+ R Sbjct: 319 ELKRSAQPEIVLNQLYKHTQMQESFSM-IFLAVVNNQPKEMGLVQALNHFIDHRIDVVRR 377 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFS--------- 422 R+ + +Q R IL+G L+A ++D +IAIIR N + +V+ F+ Sbjct: 378 RTFYLLQKAKDREHILEGYLMALDHLDNVIAIIRGSSNRADARENLVAYFTGKKITINTT 437 Query: 423 -----------LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQ 471 + Q DAIL L+L L +L +I SEL ++ + +S+L S K+ Sbjct: 438 GKAPKVDPEKPFSTRQADAILELQLHRLTRLSIDEITSELKDVRERIAEYESILASEKKL 497 Query: 472 WNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI- 530 + I E+ ++++ D G R T + A+ + + +I E + V +S+ G++ Sbjct: 498 RSVIVKELEQIRK------DYGDERRTIIQDEAAELSL--EDLIADEQVAVTVSHSGYLK 549 Query: 531 -------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--L 581 R + + ++ D +++ A T +L+ + G+ Y L + + Sbjct: 550 RTPISTYRQQRRGGTGRKGMSTRDEDFVEMMFVASTHAYLLIFTNTGRVYWLKVYEVPEI 609 Query: 582 SGRGHGEAIQLLIDLNHNQDI 602 + G G+ I L+ L + + Sbjct: 610 AAAGKGKHIGNLVALQPGESV 630 >gi|290958998|ref|YP_003490180.1| DNA gyrase subunit A [Streptomyces scabiei 87.22] gi|260648524|emb|CBG71635.1| DNA gyrase subunit A [Streptomyces scabiei 87.22] Length = 864 Score = 392 bits (1007), Expect = e-106, Method: Compositional matrix adjust. Identities = 236/631 (37%), Positives = 361/631 (57%), Gaps = 39/631 (6%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 + V+ V L ++ YL YA+S I RA+PD+RDG KPVHRR+++AM + G F K Sbjct: 18 QRVEPVGLETEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMYDGGYRPEKGFYK 77 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 AR+VG+V+G HPHGD S+YD+LVRLAQP+ R PL+ GNFG+ D AAA RYTE Sbjct: 78 CARVVGDVMGNYHPHGDSSIYDALVRLAQPWSMRMPLVDSNGNFGSPGNDPAAAMRYTEC 137 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 +M ++ +++ +DED VDF D Y+ EP V P++FPNLL NG++GIAVGMAT+IP H Sbjct: 138 KMAPLSMEMVRDIDEDTVDFTDNYDGRSQEPTVLPARFPNLLINGSAGIAVGMATNIPPH 197 Query: 195 NVQEICEAALALIDNPEISIEKLLEYII----GPDFPTGGIIVESRESIVESYRLGRGGF 250 N++E+ A ++NPE S E LL+ +I GPDFPTG ++V R+ I E+YR GRG Sbjct: 198 NLREVAAGAQWYLENPEASHEDLLDALIERIKGPDFPTGALVV-GRKGIEEAYRTGRGSI 256 Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV- 309 +RA VEE+ + C+VVTE+PYQ L +KIA+L+ +I + D+RDE++ Sbjct: 257 TMRAVVEVEEI-QNRQCLVVTELPYQTNPDNLAQKIADLVKDGKIGGIADVRDETSSRTG 315 Query: 310 -RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368 R+V+ K R +++ +++ +D++T F NM L G VP+ + LD ++ W+ H+ Sbjct: 316 QRLVIVLK-RDAVAKVVLNNLYKHTDLQTNFGANMLALVDG-VPRTLSLDAFIRHWVTHQ 373 Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTE 425 EV+ RR+ FR++ + R IL+GLL A IDE+IA+IR D + ++ + E Sbjct: 374 IEVIVRRTKFRLRKAEERAHILRGLLKALDAIDEVIALIRRSDTVDIARTGLMDLLEIDE 433 Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485 Q +AIL ++LR L LE +I E D L A+ + + +L S +Q ++ E+ + E Sbjct: 434 IQANAILEMQLRRLAALERQKIIQEHDELQAKIREYNEILASPVRQRGIVSAELAAIVEK 493 Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA--- 542 F G R T D + + +I +E I V +S G+++ ++ +VD A Sbjct: 494 F------GDDRKTMLVPYDGDMSI--EDLIAEEDIVVTVSRGGYVK--RTKTVDYRAQKR 543 Query: 543 -------LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEAIQLL 593 KE D + + T +L + G+ Y A L +GR G+ + L Sbjct: 544 GGKGVRGTKLKEDDIVDHFFVSTTHHWLLFFTNKGRVYRAKAYELPDAGRDARGQHVANL 603 Query: 594 IDLNHNQDIVTAFV---YDSTCKLLVVSSKG 621 + ++ I Y++T LV+++KG Sbjct: 604 LAFQPDEAIAEILAIRDYEAT-PYLVLATKG 633 >gi|284049851|ref|ZP_06380061.1| DNA gyrase subunit A [Arthrospira platensis str. Paraca] gi|291569152|dbj|BAI91424.1| DNA gyrase A subunit [Arthrospira platensis NIES-39] Length = 884 Score = 392 bits (1006), Expect = e-106, Method: Compositional matrix adjust. Identities = 232/581 (39%), Positives = 341/581 (58%), Gaps = 28/581 (4%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 E + LR +++ YL YA+S I RA+PD RDGFKPVHRRI++AM+E+GL F+ Sbjct: 5 ESRIIPTDLRNEMQQSYLEYAMSVIVGRALPDARDGFKPVHRRILYAMNELGLMPDRPFR 64 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 K AR+VGEV+GK HPHGD +VYD+LVR+AQ F R PLI G GNFG++D D AA RYTE Sbjct: 65 KCARVVGEVLGKYHPHGDTAVYDALVRMAQEFSMRSPLIQGHGNFGSVDNDPPAAMRYTE 124 Query: 134 ARMTQV-AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192 R+ + +E +L+ +D D VDF D ++ EP+V P++ P LL NG+SGIAVGMAT+IP Sbjct: 125 CRLHYLTSEAMLRDIDSDTVDFGDNFDGSQQEPLVLPARIPQLLLNGSSGIAVGMATNIP 184 Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252 HN+ E+ + +A+I NPEI+ +L+ YI GPDFPTG I+ R I E+Y GRG + Sbjct: 185 PHNLNELVDGLVAVIHNPEITDIELMRYIPGPDFPTGAKIL-GRSGIREAYTTGRGSITM 243 Query: 253 RARWCVEEV---GRGSW-CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AE 307 R +E + GR I++TE+PYQ K+ LIEKIAE++ KR+ + DIRDES E Sbjct: 244 RGVAQIETIEHRGRPDREAIIITELPYQTNKAALIEKIAEMVNEKRLEGISDIRDESDRE 303 Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367 +RIV+ + R P +++ +++ + ++ F NM L G+ P+++ L L +L Sbjct: 304 GMRIVVELR-RDAYPRVVLNNLYKQTPLQANFGANMLALVNGK-PELLTLKRYLHVFLDF 361 Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN-EDKP--KPVMVSRFSLT 424 R + RR+ + + + R +L+GLLIA N+D IIA+IR+ D P K ++ RF L+ Sbjct: 362 RIHTIRRRTEYEKRKAEERDHLLQGLLIALDNLDAIIALIRHAADSPTAKQELIERFGLS 421 Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484 E Q DAIL ++LR L LE +I E LL + ++ +LN ++ + E ++KE Sbjct: 422 EPQADAILQMQLRRLTALEAQKIDQEHQELLEKIADLNDILNRRERILEIVEQEAIQIKE 481 Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL---- 540 RRT + T +I E ++++ +G+I+ + ++ + Sbjct: 482 RHGTP-----RRTEIELEESELEDT---DLIANEKAIILLTEQGYIKRMPVNTFEAQNRA 533 Query: 541 ----SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPA 577 S KE D +K L D IL + G AY L A Sbjct: 534 TRGKSGTKMKEDDGVKHFLSCRDHDSILFFTERGVAYCLKA 574 >gi|89900363|ref|YP_522834.1| DNA gyrase subunit A [Rhodoferax ferrireducens T118] gi|89345100|gb|ABD69303.1| DNA gyrase subunit A [Rhodoferax ferrireducens T118] Length = 880 Score = 392 bits (1006), Expect = e-106, Method: Compositional matrix adjust. Identities = 269/763 (35%), Positives = 404/763 (52%), Gaps = 93/763 (12%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 VSL + YL YA+S I RA+PD RDG KPVHRR++ AM E+ D+ +KKSARIV Sbjct: 11 VSLEEEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHELNNDWNRPYKKSARIV 70 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGDQSVYD++VR+AQ F R+ L+ GQGNFG++DGD+AAA RYTE R++++ Sbjct: 71 GDVIGKYHPHGDQSVYDTIVRMAQDFSMRHMLVDGQGNFGSVDGDNAAAMRYTEIRLSKI 130 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A +L +D++ VDF Y+ + EP+V P++ PNLL NG+ GIAVGMAT+IP HN+ E+ Sbjct: 131 AHELLADLDKETVDFGPNYDGSEKEPLVLPTRLPNLLVNGSGGIAVGMATNIPPHNLNEV 190 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 +A L L+ NPE SI++L+E I PDFPT GII + + + YR GRG +RA+ E Sbjct: 191 VDACLHLLRNPEASIDELMEIIPAPDFPTAGIIY-GIQGVKDGYRTGRGRVVMRAKVHFE 249 Query: 260 EVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318 ++ +G I+V E+PYQV K L E++AEL+ K+I + I+DES + ++ R Sbjct: 250 DIDKGQRQSIIVDELPYQVNKKTLQERMAELVHEKKIEGISHIQDESDKSGMRLVIELKR 309 Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378 P++++ +++ + ++ F +NM L G+ P++ L ++K +L HRREV+ RR+ F Sbjct: 310 GEVPEVVLNNLYKQTQLQDTFGMNMVALIDGQ-PKLCNLKDLIKVFLQHRREVVTRRTVF 368 Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV-----------------MVSR- 420 ++ R +L+GL +A NIDE IAIIRN P PV M++R Sbjct: 369 NLRKARERGHVLEGLAVALANIDEFIAIIRNAPTP-PVAKVELMAKPWDSKLVREMLTRT 427 Query: 421 ----------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELD 452 + L++ Q IL +RL+ L LE+ +I +E Sbjct: 428 RADGGVINADDYRPDGLEKMYGMGSDGLYRLSDTQAQEILQMRLQRLTGLEQDKIVAEYK 487 Query: 453 NLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ 512 ++ E E + +L ++ I E+ +K F + T LG RR + E S D +T + Sbjct: 488 EVMGEIEDLLDILAKSERVSTIIYEELTAIKTEFGQ-TKLGARR-SLVEHSSFDLST--E 543 Query: 513 AMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRIL 564 +I + V +S+ G+I R+ K A KE D + A+T D IL Sbjct: 544 DLITPTDMVVTLSHSGYIKSQPLSEYRAQKRGGRGKQATATKEDDWVDQLFIANTHDYIL 603 Query: 565 LLSTDGKAYTLPAGNLLSG-RG-------------HGEAIQLLIDLNHNQDIVTA--FVY 608 S G+ Y L + G RG GE I +++ L + A +V+ Sbjct: 604 CFSNRGRLYWLKVWEVPQGSRGSRGRPIVNMFPLQEGEKINVVLALTGEKRSFPADQYVF 663 Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV--VKVTGDH-VAVVG 665 +T V + + F +N RKG + V +E L+ G H V + Sbjct: 664 MATSMGTVKKTPLDEF--------SNPRKG-GIIAVGLDEGDYLIGAALTDGKHDVMLFS 714 Query: 666 ENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707 + K + F + + M R +GVR +DG VI + E Sbjct: 715 DGGKAVRFDENDVRPMGRNARGVRGMMLEDG--QGVIAMLVAE 755 >gi|296127173|ref|YP_003634425.1| DNA gyrase, A subunit [Brachyspira murdochii DSM 12563] gi|296018989|gb|ADG72226.1| DNA gyrase, A subunit [Brachyspira murdochii DSM 12563] Length = 834 Score = 392 bits (1006), Expect = e-106, Method: Compositional matrix adjust. Identities = 259/778 (33%), Positives = 423/778 (54%), Gaps = 74/778 (9%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 V +S+ L E YL YA+S I RA+PD+RDG KPVHRRI++AM + L +KKSA Sbjct: 27 VDHISIENELRESYLTYAMSVIVSRALPDVRDGLKPVHRRILYAMYDANLTHDKPYKKSA 86 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 VGEV+ + HPHGD +VY ++VR+AQ F RY L+ GQGNFG+ID D AA RYTEARM Sbjct: 87 ATVGEVLARYHPHGDAAVYGTMVRMAQDFSMRYLLVDGQGNFGSIDDDPPAAMRYTEARM 146 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 T+ AE +L ++++ V F +++ +EP V P+ P LL NG+ GIA+GMAT++P+HN+ Sbjct: 147 TRFAEEMLNDIEKETVKFVPNFDDSRTEPSVLPATVPQLLVNGSMGIAIGMATNMPTHNL 206 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 +E+ A + ID+ + I+ L+ YI GPDFPT GII +E I E+Y G+G ++RAR Sbjct: 207 REVVNAVVYYIDHQDAEIKDLMRYIQGPDFPTAGIIY-GKEGIKEAYTTGKGRIKLRARL 265 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE--DVRIVLF 314 +EE + IVV E+PY V K+ L EKIAEL+ +I + DIRDES+ +R+++ Sbjct: 266 EIEETKKDREAIVVKELPYGVVKTTLHEKIAELVKQGKIEGVADIRDESSNRAGIRLIIE 325 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K + + +++ +F +D+ET F + +N+ + P+V+ L ++K ++ HR EV+ + Sbjct: 326 LK-KGVATQIVLNQLFKHTDLETTFGI-INLALVNGEPKVLNLKELIKYFVDHRVEVITK 383 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAI 431 R+ + + + IL+GLLIA NI+E+I IIR N D + +++RF L+E Q AI Sbjct: 384 RTEYDLNQAKAKAHILEGLLIAQANIEEVIRIIRESENTDAARTTLMNRFKLSEKQAQAI 443 Query: 432 LNLRLRSLRKLEEYQIKSEL----------DNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481 L++ L+ L LE+ +I+ EL ++LLA EKI +++ K + +IA + + Sbjct: 444 LDMPLKRLTALEKLKIEQELQQLREFIAYCEDLLAHPEKILAVI---KDELKKIAEKYGD 500 Query: 482 VK--EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539 + EI K+ D E+ D +I E + V I+ +G+I+ + + S Sbjct: 501 DRRSEIIGKTND--------TEIDEED-------LIHDEDVAVSITTQGFIKRVPASSYR 545 Query: 540 LSALHFKEGDSLKIA--------LHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEA 589 K A T D + + + GKA+ + + L+ G++ Sbjct: 546 TQGRGGVGVQGGKSQGEHYIEHLFVASTKDYLFIFTDRGKAFWMKVHEIPALTKISQGKS 605 Query: 590 IQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS 646 I+ +++L + I + F +D +++V+ G +E + ++G L + + Sbjct: 606 IKFILNLAPEEKITSYFTVSEFDPKQSIIMVTKMGTIKKMELKHLENAKKRGILALTLEN 665 Query: 647 EEKMKLVVKV-TGDHVAVVGENRKLLIFSIDQIPEMSRG----KGVRLQSYKDGGISDVI 701 +++ V V +GD + L + ++I +M R KG+ L D I Sbjct: 666 NDELVAVSAVQSGDDFIMTTATGLALRITEEKIRKMGRAAAGVKGIALD-------DDDI 718 Query: 702 CFK---ICEGLTWI----DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752 C I +G + I + G+ + + ++ G RGG G + K ++GK +S Sbjct: 719 CVSGNAIHKGESLIVITENGIGKRLSSKQFNVKG----RGGKGQIYIKPDNKTGKVVS 772 >gi|152979411|ref|YP_001345040.1| DNA gyrase subunit A [Actinobacillus succinogenes 130Z] gi|150841134|gb|ABR75105.1| DNA gyrase, A subunit [Actinobacillus succinogenes 130Z] Length = 890 Score = 392 bits (1006), Expect = e-106, Method: Compositional matrix adjust. Identities = 248/659 (37%), Positives = 374/659 (56%), Gaps = 64/659 (9%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 +++ VS+ L+ YL YA+S I RA+PD+RDG KPVHRR++ +M + G A+ K Sbjct: 6 QDITPVSIEDELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDQSGNTHNKAYVK 65 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 SAR+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG+IDGD+ AA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRYTEV 125 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 RM ++ + +L +D++ VDF Y+ ++ P V P+K P LL NG+SGIAVGMAT+IP H Sbjct: 126 RMQKITQELLTDLDKETVDFSPNYDGKEMIPDVLPTKIPALLVNGSSGIAVGMATNIPPH 185 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 N+ E+ + LA IDN +ISI++L+++I GPDFPT +I R I E+Y+ GRG VRA Sbjct: 186 NLGEVMDGCLAYIDNEDISIDELMQFIPGPDFPTAALI-NGRRGIEEAYKTGRGKVYVRA 244 Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVL 313 + + +G IVVTEIPYQV K++L+EKI ELI K+I + I D S E +R+ + Sbjct: 245 KAEIVTNDKGREQIVVTEIPYQVNKAKLVEKIGELIREKKIEGISGILDLSNKEGIRLEI 304 Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373 K R ++++ ++ L+ M+ F +NM L G+ P++ L I++ ++ HRREV+ Sbjct: 305 DIK-RDAVGEVVLNHLYALTQMQVTFGINMVALDHGQ-PKLFNLKQIIEAFVKHRREVVT 362 Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSR---------- 420 RR+ + ++ R IL+GL IA NID +I +IR D+ + +++R Sbjct: 363 RRTVYELRKARERAHILEGLAIALANIDPVINLIRASKTADEAREGLLARAWELGNVAPM 422 Query: 421 ------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLA 456 + L+E Q AIL LRL L LE +I SE +L Sbjct: 423 LEAAGVDVSRPDDLPAECGVREGQYYLSETQARAILELRLHRLTGLEHEKIVSEYQEILV 482 Query: 457 EKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE 516 + + +L S ++ I E+ VK F+ + RRT E++ A + +I Sbjct: 483 QIGEYLHILTSIERLREVIREELELVKTNFNDA-----RRT---EITTASSDINLEDLIA 534 Query: 517 KEPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568 +E + V +S+ G+++ + + SA KE D ++ L A+T D IL S+ Sbjct: 535 QEDVVVTLSHEGYVKYQPLTDYEAQRRGGKGKSATKMKEDDFIEKLLVANTHDTILCFSS 594 Query: 569 DGKAYTLPAGNLL-SGRG-HGEAIQLLIDLNHNQDIVTAFV----YDSTCKLLVVSSKG 621 G+ Y L L + RG G I ++ L N+ I TA + YD +L+ ++ G Sbjct: 595 RGRLYWLKVYQLPEASRGARGRPIVNILPLEENERI-TAILPVASYDEDKFVLMATAGG 652 >gi|296268005|ref|YP_003650637.1| DNA gyrase subunit A [Thermobispora bispora DSM 43833] gi|296090792|gb|ADG86744.1| DNA gyrase, A subunit [Thermobispora bispora DSM 43833] Length = 834 Score = 392 bits (1006), Expect = e-106, Method: Compositional matrix adjust. Identities = 236/630 (37%), Positives = 364/630 (57%), Gaps = 35/630 (5%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 + ++ + L+ ++ Y+ YA+S I RA+PD+RDG KPVHRR+++AM E G + K Sbjct: 13 DRIEVIDLQAEMQRSYMDYAMSVIVSRALPDVRDGLKPVHRRVLYAMFEGGYRPDRGYFK 72 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 S+RIVG+V+G HPHGD S+YD++VRLAQP+ RYPL+ GQGNFG+ D AAA RYTE+ Sbjct: 73 SSRIVGDVMGSYHPHGDASIYDTVVRLAQPWSLRYPLVDGQGNFGSPGNDPAAAMRYTES 132 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 RM +A +L+ +D+D VDF+ Y+ EPVV PS+FPNLL NG+SGIAVGMAT+IP H Sbjct: 133 RMAPIAMEMLRDIDKDTVDFQPNYDGRSREPVVLPSRFPNLLVNGSSGIAVGMATNIPPH 192 Query: 195 NVQEICEAALALIDNPEISIEKLLEYII----GPDFPTGGIIVESRESIVESYRLGRGGF 250 N++E EA +++PE+S E+LLE +I GPDFPTG +IV R I E+YR GRG Sbjct: 193 NLRETGEAVQWALEHPELSDEELLEGLIERIKGPDFPTGALIV-GRRGIEEAYRTGRGSI 251 Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV- 309 +RA +EE +G C+VVTE+PY V L IAEL+ +I + D+RDES+ Sbjct: 252 IMRAVVELEEDAKGRQCLVVTELPYMVNPDNLALTIAELVREGKISGIADVRDESSSRTG 311 Query: 310 -RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368 R+V+ K R P +++ +++ + ++T F NM L G VP+ + LD ++ ++ H+ Sbjct: 312 QRLVIVLK-RDAVPKVVLNNLYKHTQLQTTFGANMIALVDG-VPRTLRLDQFVRHYIRHQ 369 Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTE 425 +V+ RR+ F ++ + R IL+GLL A IDE+I +IR + + + +++ + E Sbjct: 370 IDVVVRRTRFLLRKAEERAHILRGLLKALERIDEVIELIRRSPSATEAQTGLMALLEIDE 429 Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485 Q AIL+++LR L LE QI+ E D L+A+ + +L S +Q ++ E+ EI Sbjct: 430 VQAQAILDMQLRKLAALERQQIQDEYDGLMAQIADYNDILGSEMRQRRLVS---EELGEI 486 Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHS 537 +K D R + T E + ++ +I +E + V I+ G+ R+ + Sbjct: 487 IAKYGDERRTKITAYEGDMS-----EEDLIAEEDVVVTITRGGYAKRTSIDAYRAQRRGG 541 Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQL 592 + ++ D ++ T +L + G KAY LP RG A L Sbjct: 542 KGVRGAQLRQDDIVEHFFVTSTHHWLLAFTNKGRVYRFKAYELPEA-ARDARGQHLANLL 600 Query: 593 LIDLN-HNQDIVTAFVYDSTCKLLVVSSKG 621 + + H +I++ YD L++ + G Sbjct: 601 AMQPDEHVMEILSLRNYDEAPYLVLATRSG 630 >gi|148652682|ref|YP_001279775.1| DNA gyrase subunit A [Psychrobacter sp. PRwf-1] gi|148571766|gb|ABQ93825.1| DNA gyrase subunit A [Psychrobacter sp. PRwf-1] Length = 899 Score = 392 bits (1006), Expect = e-106, Method: Compositional matrix adjust. Identities = 229/630 (36%), Positives = 352/630 (55%), Gaps = 79/630 (12%) Query: 13 VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72 + ++V +++ +++ YL YA+S I RA+PD+RDG KPVHRRI++AM ++ D+ + Sbjct: 1 MSDSVSPIAIVDEMKQSYLDYAMSVIVSRALPDVRDGLKPVHRRIMYAMHQLSNDYNKPY 60 Query: 73 KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132 KKSAR+VG+VIGK HPHGD +VYD++VR+AQ F RYP++ GQGNFG+ID D AAA RYT Sbjct: 61 KKSARVVGDVIGKYHPHGDTAVYDAIVRMAQDFSLRYPMVDGQGNFGSIDDDPAAAMRYT 120 Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192 E RMT++ +L +D+D VD+ D Y+ + P V P++ PNLL NG +GIAVGMAT++ Sbjct: 121 EVRMTKLTHQMLGDLDKDTVDWEDNYDGSERMPSVLPARIPNLLVNGATGIAVGMATNMA 180 Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252 HN+ E+ A LA DNP IS E+L YI GPDFPTGGII R IV++YR G+G + Sbjct: 181 PHNLTEVLNACLAYADNPNISSEELTNYISGPDFPTGGIIY-GRSGIVDAYRTGKGRLHI 239 Query: 253 RARWCVEE-----VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307 R R+ +E V R IV TEIPYQ K++LIE+IAEL+ K+I + +IRDES + Sbjct: 240 RGRYHIEPMSDTGVNRDRERIVFTEIPYQSNKAKLIERIAELVRDKKIEGISEIRDESDK 299 Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367 D + R ++++ ++F+ + +E+ F +NM L G+ P++M L ++ ++ H Sbjct: 300 DGMRIAIDLRRGEVAEVIVNNLFLQTPLESSFSINMVALDNGQ-PKLMTLRQLIAAFVRH 358 Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR------------------- 408 R+EV+ RR+ F + R +L+GL +A NID+IIA I+ Sbjct: 359 RQEVVTRRTIFELNKAKARGHLLEGLTVALANIDDIIATIKESANRGEAREKLLAQIWDS 418 Query: 409 -----------------------------NEDKPKPVMV----SRFSLTENQVDAILNLR 435 ED P + + + L+ QV+AIL ++ Sbjct: 419 GTVVAMLQAAGRGTLAAGDLRSVRPEYIEGEDLKNPFGLIDQGNNYRLSLEQVNAILEMQ 478 Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS--KSTDLG 493 L L LE+ ++ E +LL + +++S+L + I E+ E+ E F + TD+ Sbjct: 479 LHRLTGLEQDKLTEEYQDLLRQIAELESILADFDKLMMVIKNEMLEILENFGDERRTDIV 538 Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHF 545 RT F SR D +I ++ + + +S G+ ++ K SA Sbjct: 539 DSRTDF---SRED-------LIPEQTVVLTVSRTGYAKTQPISDYVAQKRGGKGKSATAM 588 Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTL 575 KE D + + T +L + +G+ ++L Sbjct: 589 KEDDVIDHLVVTSTHATVLCFTDNGRVFSL 618 >gi|170748569|ref|YP_001754829.1| DNA gyrase, A subunit [Methylobacterium radiotolerans JCM 2831] gi|170655091|gb|ACB24146.1| DNA gyrase, A subunit [Methylobacterium radiotolerans JCM 2831] Length = 910 Score = 392 bits (1006), Expect = e-106, Method: Compositional matrix adjust. Identities = 246/699 (35%), Positives = 380/699 (54%), Gaps = 75/699 (10%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 +++ VS+ + YL YA+S I RA+PD RDG KPVHRRI+++ E G + KS Sbjct: 15 DIRPVSITDEMRRSYLDYAMSVIVSRALPDARDGLKPVHRRILYSAFESGHLPERKYVKS 74 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 ARIVG+VIG HPHGDQS+YD+LVR+AQ F R LI GQGNFG++DGD AA RYTE+R Sbjct: 75 ARIVGDVIGLYHPHGDQSIYDALVRMAQDFSMRLMLIDGQGNFGSVDGDPPAAMRYTESR 134 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 + + A +L +D++ VDF Y+E EP V P++FPNLL NG GIAVGMAT+IP HN Sbjct: 135 LAKPATALLTDIDKNTVDFGPNYDESREEPTVLPARFPNLLVNGAGGIAVGMATNIPPHN 194 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 + E+ +A +ALID+P ++IE+L E + GPDFPTGG+I+ R ++Y GRG +RA+ Sbjct: 195 LGELIDACVALIDDPGLTIEQLTEIVPGPDFPTGGMIL-GRAGTRQAYATGRGSVIMRAK 253 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314 VEE+ + ++ TEIPYQV K+ L+EKIAEL+ KR+ + D+RDES +RIV+ Sbjct: 254 SHVEELRKEREALIFTEIPYQVNKATLVEKIAELVKEKRVEGISDLRDESDRSGMRIVVE 313 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K ++ D+++ ++ + +++ F NM L+ GR P++M L +L+ ++ R EV+ R Sbjct: 314 IKRDAM-ADVVLNQLYRFTPLQSSFGCNMVALNGGR-PELMNLKDLLQAFVDFREEVVSR 371 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----------- 420 R+ F + R +L GL IA NIDE+I +IR P + ++ R Sbjct: 372 RTKFLLGKARERAHVLCGLAIAVANIDEVIRLIRTSPDPNAAREALMGRDWPAHDIAPLI 431 Query: 421 ---------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLL 465 + L+E Q AIL+LRL+ L L ++ EL L E +L Sbjct: 432 ALVDDPRHRVAEDGTYRLSETQARAILDLRLQRLTALGRDEVGDELKTLADEIADYLDIL 491 Query: 466 NSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVIS 525 S + + E+ EV+E F+ R+T E+ D + + +I +E + V +S Sbjct: 492 RSRARIQGIVKGELAEVREQFATP-----RKT---EIVDFDGSVEDEDLIAREDMVVTVS 543 Query: 526 NRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT--- 574 + G++ R+ + S + ++ D + A+T +L S+ G+AY Sbjct: 544 HAGYVKRVPLSTYRAQRRGGKGRSGMATRDEDFVTRLFVANTHTPVLFFSSQGQAYKEKV 603 Query: 575 --LPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV-------YDSTCKLLVVSSKGNAFI 625 LP + + G+A+ ++ L + +T + T ++ +++GN Sbjct: 604 WRLP---MAAPNARGKALVNILQLQDTSERITTIMPLPEDEASWETLDVMFATARGNVRR 660 Query: 626 VEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVV 664 + S+ R GK +K+ GDH+ V Sbjct: 661 NKLSDFTTVNRNGKIAMKLDP-----------GDHIVHV 688 >gi|154483928|ref|ZP_02026376.1| hypothetical protein EUBVEN_01634 [Eubacterium ventriosum ATCC 27560] gi|149735419|gb|EDM51305.1| hypothetical protein EUBVEN_01634 [Eubacterium ventriosum ATCC 27560] Length = 833 Score = 392 bits (1006), Expect = e-106, Method: Compositional matrix adjust. Identities = 238/690 (34%), Positives = 394/690 (57%), Gaps = 41/690 (5%) Query: 26 LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85 +E Y+ YA+S I RA+PD+RDG KPV RR++++M E+ +K ARIVG+ +GK Sbjct: 1 METSYIDYAMSVIASRALPDVRDGLKPVQRRVLYSMVELNNGPDKPHRKCARIVGDTMGK 60 Query: 86 LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145 HPHGD S+Y +LV +AQ + RYPL+ G GNFG+ DGD AAA RYTEAR+++++ ++ Sbjct: 61 FHPHGDSSIYGALVNMAQEWNTRYPLVDGHGNFGSEDGDGAAAMRYTEARLSKISMEMVA 120 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 +++D V+F ++E + EP V PS++PNLL NGTSGIAVGMAT+IP HN+ E A + Sbjct: 121 DINKDTVEFTPNFDETEKEPSVLPSRYPNLLVNGTSGIAVGMATNIPPHNLTETINAIVK 180 Query: 206 LIDNP-----EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEE 260 +IDN + +IE+++E I GPDFPTG I+ R+ I ++YR GRG + RA +E Sbjct: 181 IIDNKVEENRDTTIEEIMEIIKGPDFPTGATIL-GRKDIEQAYRTGRGKIKTRAVSEIET 239 Query: 261 VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSL 320 + G I+VTE+PY V K++L+EKIA L+ K++ + D+RDES ++ V+ R Sbjct: 240 MDNGKSRIIVTELPYMVNKAKLVEKIASLVKEKKVDGITDLRDESDQEGTRVVIEVRRDA 299 Query: 321 DPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRM 380 + ++++ ++ + ++ F + M L G P+V+ L +L E+L H+++V+ RR+ F + Sbjct: 300 NANVILNQLYKHTQLQDSFGVIMLALVDGE-PKVLNLLQMLDEYLKHQKDVVTRRTKFEL 358 Query: 381 QAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAILNLRLR 437 + R I+KGLLIA NIDE+I IIR K ++ RF L++ Q AI+++RLR Sbjct: 359 NKAEERAHIIKGLLIALDNIDEVIKIIRGSRTTADAKKNLIERFGLSDAQSQAIVDMRLR 418 Query: 438 SLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRT 497 L L +++E +L+A+ + + S+L + I EI +++ F G R Sbjct: 419 QLTGLAREDLEAEYADLMAKIDYLKSILADENKLLTVIKEEIEVIRDKF------GDERR 472 Query: 498 TFCEVSRADKATLQQAMIEKEPITVVISNRGWIR-----SLKSHS---VDLSALHFKEGD 549 T ++ D + + +I +E V ++N G+I+ + KS + + + + D Sbjct: 473 TKIGINVGDLS--DEDLIPEEDTVVAMTNLGYIKRMTVDNFKSQNRGGKGIKGMQTIDKD 530 Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNL-LSGR-GHGEAIQLLIDLNHNQDIVTAFV 607 +K T D IL L+ G+ Y L + +GR G AI L+ L + I +A V Sbjct: 531 FMKDMFMVSTHDYILFLTNTGRIYKLKCYEIPEAGRTARGMAIVNLLQLQPGEKI-SAMV 589 Query: 608 ----YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV----SSEEKMKLVVKVTGD 659 ++ L++ + KG ++++ I+A T K+ ++ +E + + + D Sbjct: 590 QMKEFEEDKYLIMATKKGT---IKKTPIMAYTNIRKSGIQAITLREDDELIDVTISDNND 646 Query: 660 HVAVVGENRKLLIFSIDQIPEMSRGK-GVR 688 ++ ++ + + + F + E R GVR Sbjct: 647 NIMLITKKGQGIKFRETDVRETGRSAMGVR 676 >gi|15604909|ref|NP_219693.1| DNA gyrase subunit A [Chlamydia trachomatis D/UW-3/CX] gi|255310989|ref|ZP_05353559.1| DNA gyrase subunit A [Chlamydia trachomatis 6276] gi|255317290|ref|ZP_05358536.1| DNA gyrase subunit A [Chlamydia trachomatis 6276s] gi|13627049|sp|O84192|GYRA_CHLTR RecName: Full=DNA gyrase subunit A gi|3328594|gb|AAC67781.1| DNA Gyrase Subunit A [Chlamydia trachomatis D/UW-3/CX] gi|296435704|gb|ADH17878.1| DNA gyrase subunit A [Chlamydia trachomatis G/9768] gi|296436628|gb|ADH18798.1| DNA gyrase subunit A [Chlamydia trachomatis G/11222] gi|297140063|gb|ADH96821.1| DNA gyrase subunit A [Chlamydia trachomatis G/9301] gi|297748319|gb|ADI50865.1| DNA gyrase subunit A [Chlamydia trachomatis D-EC] gi|297749199|gb|ADI51877.1| DNA gyrase subunit A [Chlamydia trachomatis D-LC] Length = 836 Score = 392 bits (1006), Expect = e-106, Method: Compositional matrix adjust. Identities = 233/593 (39%), Positives = 343/593 (57%), Gaps = 26/593 (4%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 EE + +L ++E YL Y++S I RA+PD RDG KP RRI++AM ++ L G + Sbjct: 5 EEIIVPKNLEEEMKESYLRYSMSVIISRALPDARDGLKPSQRRILYAMKQLNLTPGVKHR 64 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 K A+I G+ G HPHG+ +Y +LVR+AQ + RYPL+ GQGNFG+IDGD AAA RYTE Sbjct: 65 KCAKICGDTSGDYHPHGESVIYPTLVRMAQDWAMRYPLVDGQGNFGSIDGDPAAAMRYTE 124 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 AR+T A +L+ +D+D VD Y+E EPVVFPSKFPNLL NG+SGIAVGMAT+IP Sbjct: 125 ARLTHSAIFLLEDLDKDTVDMVPNYDETKYEPVVFPSKFPNLLCNGSSGIAVGMATNIPP 184 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E+ EA L ++ N + SIE +LE + GPDFPTGGII + E I +Y GRG R+R Sbjct: 185 HNLGELIEATLLVLANSQTSIEDILEVMPGPDFPTGGIICGT-EGIRSTYYTGRGKLRLR 243 Query: 254 ARWCVEE-VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRI 311 AR VEE + I++TE+PY V KSRLIE+IAELI K + + D+RDES +D +R+ Sbjct: 244 ARMHVEENSDKQRENIILTEMPYNVNKSRLIEQIAELINEKTLTGISDVRDESDKDGIRV 303 Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371 VL K + ++++ ++ +D++ F NM L +P+ M + ++ W+ HR +V Sbjct: 304 VLELK-KGESSEVVINRLYKFTDVQVTFGANMLALDKN-LPRTMNIHRMISAWIRHRMDV 361 Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQV 428 + RR+ + + + R IL+G L A +DE++ IR N++ K +V FS +E Q Sbjct: 362 IQRRTRYELNKAEARAHILEGFLKALSCMDEVVKTIRESSNKEHAKQQLVELFSFSEAQA 421 Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488 AIL LRL L LE +++ E LL + +L + + I E++E+ ++ Sbjct: 422 LAILELRLYQLTGLEADKVQKEYSELLEKITYYRKVLAEEELVKDIIREELQELHKVHKT 481 Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSVDL 540 R T E+ D ++ +I E + + IS +++ + K + Sbjct: 482 P------RRTRIEMDAGDVRDIED-IISDESVIITISGDDYVKRMPVKVFREQKRGGQGV 534 Query: 541 SALHFKEG-DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAI 590 + K+G D LK A T D +L+ + G+ Y L L G R G+ I Sbjct: 535 TGFDMKKGSDFLKAVYSASTKDYLLIFTNFGQCYWLKVWRLPEGERRAKGKPI 587 >gi|315500084|ref|YP_004088887.1| DNA gyrase, a subunit [Asticcacaulis excentricus CB 48] gi|315418096|gb|ADU14736.1| DNA gyrase, A subunit [Asticcacaulis excentricus CB 48] Length = 918 Score = 392 bits (1006), Expect = e-106, Method: Compositional matrix adjust. Identities = 249/709 (35%), Positives = 376/709 (53%), Gaps = 56/709 (7%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 + V++ L+ YL YA+S I RA+PD RDG KPVHRRI++AM E G + KS Sbjct: 14 GISHVTIEDELKRSYLDYAMSVIVSRALPDARDGLKPVHRRIVYAMYEEGRTHDKKYVKS 73 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 A IVG+V+G+ HPHGD ++YD+LVR+AQPF R L+ GQGNFG++DGD AA RYTE+R Sbjct: 74 ANIVGDVMGRYHPHGDGAIYDALVRMAQPFSMRLLLVDGQGNFGSVDGDPPAAMRYTESR 133 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 MT+ AE ++ +D++ VDF D Y+ EP V PS+ PNLL NG GIAVGMAT+IP HN Sbjct: 134 MTRAAESLIADIDKNTVDFNDNYDGARQEPSVLPSRIPNLLVNGAGGIAVGMATNIPPHN 193 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 + EI EA LA++D+PE+S E LL + GPDFPTGG I+ R ++ GRG +R + Sbjct: 194 LGEIIEACLAMLDDPEVSTETLLGIVPGPDFPTGGEIL-GRSGARQALLTGRGSVIMRGK 252 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315 VE + + I+VTE+PYQV K+ LIE IAE++ KRI + DIRDES ++ Sbjct: 253 ASVETIRKDREAIIVTELPYQVNKATLIEHIAEMVREKRIEGISDIRDESDRQGMRMVIE 312 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 R D+++ ++ S ++T F +NM L+ GR PQ M L +L+ +L R EV+ RR Sbjct: 313 LKRDASGDVILNQLYRYSALQTSFGVNMLALNHGR-PQQMGLRKLLEIFLDFREEVVVRR 371 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP-----------------KPVMV 418 + F + R +L GL IA NIDEII IIR+ P P++ Sbjct: 372 TRFELNKARDRGHVLVGLAIAVANIDEIIHIIRSSVDPTEARERLTAKNWPAGDMSPLIE 431 Query: 419 ------------SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466 LTE Q AIL L L L L +I E L A + ++L+ Sbjct: 432 LIADPRSIVFEGGEVRLTEEQARAILALTLSRLTGLGRDEIFGEARTLAASIAEYLAILS 491 Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526 S ++ + E+ EVK ++++ RR+ + + + +I +E + V +++ Sbjct: 492 SRERILGIVREELEEVKALYAEP-----RRSLIVD---GEADIEDEDLIPREDMVVTVTH 543 Query: 527 RGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAG 578 G++ R+ S + K+ D++ A T +L S+ GKAY L Sbjct: 544 SGYVKRTPLSAYRTQHRGGKGRSGMAMKDEDAITGIYAASTHQPMLFFSSTGKAYKLKVW 603 Query: 579 NLLSG--RGHGEAIQLLIDLNHNQDIVTAFVYDST------CKLLVVSSKGNAFIVEESE 630 L G + G+A L+ L+ ++ + ++ + G+ + S+ Sbjct: 604 RLPLGTPQSKGKAFVNLLPLDKHETVTNILTLPEDEAAWDRLDIVFATRSGDVRRNKLSD 663 Query: 631 IIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQI 678 + R GK +K+ + + V T D V + + + + F++D++ Sbjct: 664 FVNVNRAGKIAMKLEEGDAIVGVALCTEDQDVLLSTASGRSIRFAVDEV 712 >gi|320533166|ref|ZP_08033888.1| DNA gyrase, A subunit [Actinomyces sp. oral taxon 171 str. F0337] gi|320134626|gb|EFW26852.1| DNA gyrase, A subunit [Actinomyces sp. oral taxon 171 str. F0337] Length = 893 Score = 391 bits (1005), Expect = e-106, Method: Compositional matrix adjust. Identities = 236/662 (35%), Positives = 374/662 (56%), Gaps = 42/662 (6%) Query: 13 VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72 V E ++ V L+ ++ YL YA+S I RA+PD+RDG KPVHRR+++AM + G A+F Sbjct: 19 VPERIQPVDLQMEMQRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMYDGGYRPTASF 78 Query: 73 KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132 KS+R+VG+V+G HPHGD ++YD+L RL Q + RYPL++GQGNFG AA RYT Sbjct: 79 SKSSRVVGDVMGTYHPHGDSAIYDALARLVQWWSLRYPLVAGQGNFGTPGNLGPAAPRYT 138 Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192 E +M +A +L+ +DED+VDF+D Y+ + EPV+ PS+FPNLL NG+ GIAVGMAT IP Sbjct: 139 ECKMAPLAMEMLRDIDEDSVDFQDNYDGRNQEPVILPSRFPNLLVNGSEGIAVGMATRIP 198 Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYII----GPDFPTGGIIVESRESIVESYRLGRG 248 HN++E+ A +++P+ S E+LL+ +I GPDFPTG I+ R I ++YR GRG Sbjct: 199 PHNLREVARGAQWYLEHPDASREELLDALIERIPGPDFPTGATIL-GRRGIEDAYRTGRG 257 Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308 RA VEE+ +G C+VVTE+PYQV L +KIA+L+ ++ + DIRDE++ Sbjct: 258 SITQRAVVNVEEI-QGRQCLVVTELPYQVNPDNLADKIAQLVRDGQVTGIADIRDETSGR 316 Query: 309 V--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366 R+V+ K ++ +++ +++ + ++ FP NM L G VP+ + LDG ++ W++ Sbjct: 317 TGQRLVIVLKRDAV-AKVVLNNLYKRTQLQDNFPANMLALVDG-VPRTLSLDGFVRHWVS 374 Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSL 423 H+ +V+ RRS FR++ + R+ IL+GLL A +D +IA+IR ++ + ++ + Sbjct: 375 HQIDVIVRRSRFRLRKAEERLHILEGLLKAIDALDAVIALIRRSPTTEEARTGLMGLLDV 434 Query: 424 TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483 E Q +AIL+L+LR L LE +I+ E D L A + + ++ S ++Q ++ E+ E+ Sbjct: 435 DEAQAEAILSLQLRRLAALERLKIQEESDELRARVKDLREIIASPERQRGIVSDELAEIV 494 Query: 484 EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV----- 538 E + RRT D + +I +E + V I+ G+ + ++ S Sbjct: 495 EKYGDE-----RRTRIVPF---DGEMSMEDLIPEEDVVVTITRSGYAKRTRTDSYRSQHR 546 Query: 539 ---DLSALHFKEGDSLKIALHAHTTDRILLLSTD------GKAYTLPAGNLLSGRGHGEA 589 + +E D + TT R LL T+ K Y LP G S G+ Sbjct: 547 GGKGIRGATLREDDVVD-HFFVTTTHRWLLFFTNYGRVYRAKGYELPEGGRDS---KGQH 602 Query: 590 IQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS 646 + L+ ++I YD L++ + +G SE +N G + + Sbjct: 603 VANLLAFQPGEEIAQVMELRDYDQADFLVLATRRGLVKKTRLSEYNSNRSGGVIAINLRQ 662 Query: 647 EE 648 +E Sbjct: 663 DE 664 >gi|284162534|ref|YP_003401157.1| DNA gyrase subunit alpha [Archaeoglobus profundus DSM 5631] gi|284012531|gb|ADB58484.1| DNA gyrase, A subunit [Archaeoglobus profundus DSM 5631] Length = 738 Score = 391 bits (1005), Expect = e-106, Method: Compositional matrix adjust. Identities = 253/683 (37%), Positives = 384/683 (56%), Gaps = 67/683 (9%) Query: 26 LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85 L++ YL YA+S I RA+PD+RDG KPV RRI++AM EMGL K AR+VG V+G Sbjct: 13 LKDAYLDYAMSVIVGRALPDVRDGLKPVQRRILYAMYEMGLTHDKPHVKCARVVGHVLGH 72 Query: 86 LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145 HPHGD VY++LVR+AQ F RYPLI GQGNFG+IDGD AA RYTE R+T++AE +L+ Sbjct: 73 YHPHGDAPVYEALVRMAQDFSMRYPLIDGQGNFGSIDGDEPAAMRYTECRLTEIAEKMLE 132 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 +D++ VDF+ ++ EPVV P+K PNLL NG +GIAVGM T+IP HN++E+C+ +A Sbjct: 133 DIDKNTVDFQPNFDASKQEPVVLPAKIPNLLINGCTGIAVGMMTNIPPHNIREVCDGIIA 192 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265 I NP ISIE+L+ +I GPDFPTGG+IV R+ I+E+YR G+G +R + VEE Sbjct: 193 YIKNPNISIEELMNFIKGPDFPTGGVIV-GRDGIIEAYRTGKGKIILRGKVDVEE----- 246 Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFPKNRSLDPDL 324 I++ EIPY V K++L+EKIA+LI ++ L + +RDES E +R+V+ K DP Sbjct: 247 DKIIIREIPYMVNKAKLVEKIADLIKKDKL-LAKTVRDESDREGIRVVIELKE---DPYS 302 Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384 ++ ++ + ++ F + M L + P+++ L ++ ++ HRREV+ R++ + ++ + Sbjct: 303 ALKKLYDHTPLKVTFNVVMLAL-VNNEPKLLNLKELIAHYVNHRREVVRRKAEYELKKAE 361 Query: 385 RRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVDAILNLRLRSLRK 441 R I++GL+ A +DE+I +I+ D K ++ +TE Q +AIL LRL+ L + Sbjct: 362 ERNHIVEGLIRAIEKLDEVINLIKQSDSTKNAKEGLMKLLRITEKQAEAILQLRLQMLTR 421 Query: 442 LEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCE 501 LE + E + L +++ S+L K+ I E+REVK F + RRT Sbjct: 422 LEYESLMKEFNELKGRIDELKSILADPKRVDEIIVEELREVKRKFGDN-----RRTEII- 475 Query: 502 VSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL----KIALHA 557 DK L++ + E V ++ G I+ F+ G +L KI L A Sbjct: 476 ----DKEILKEVV---EEFGVAVTLDGQIK------------RFEIGKALRSNPKILLRA 516 Query: 558 HTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL----LIDLNHNQDIVTAFVYDSTCK 613 + ILL S+D KAY++ H I L L + + T V + Sbjct: 517 MSNLDILLFSSD-KAYSI----------HARDIPLDFTPLSKFISAEKVETGVV--AKGD 563 Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIF 673 ++++S GN V E R G + + E + V + +N ++ F Sbjct: 564 VVILSKDGNIKKVRLEEFANAKRAG-----IIAGENIGFARLYEDGDVIIATKNGYIVRF 618 Query: 674 SIDQIPEMSR-GKGVRLQSYKDG 695 +IPE R KGV+ + ++G Sbjct: 619 RSSEIPEYGRSAKGVKAITLREG 641 >gi|282889967|ref|ZP_06298502.1| hypothetical protein pah_c008o057 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281500160|gb|EFB42444.1| hypothetical protein pah_c008o057 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 865 Score = 391 bits (1005), Expect = e-106, Method: Compositional matrix adjust. Identities = 257/745 (34%), Positives = 408/745 (54%), Gaps = 54/745 (7%) Query: 26 LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85 +++ YL Y++S I RA+PD RDG KP RRI++AM ++ L G +K A+I G+ G Sbjct: 18 MKDSYLRYSMSVIIARALPDARDGLKPSQRRILYAMRQLNLSPGGKHRKCAKISGDTSGD 77 Query: 86 LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145 HPHG+Q +Y +LVR+AQ ++ RYPL+ GQGNFG++DGD AA RYTEAR+T + +++ Sbjct: 78 YHPHGEQVIYPTLVRMAQGWLMRYPLVDGQGNFGSVDGDQPAAMRYTEARLTHASVQLME 137 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 +D++ V+ Y+E EP VFP+KFPNLL NG+SGIAVGMAT+IP HN+ E+ +A L Sbjct: 138 DLDKNTVEMVPNYDETKKEPTVFPAKFPNLLCNGSSGIAVGMATNIPPHNLNELIQATLL 197 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRG- 264 ++ NP +SI++++ + PDFPTGGII R I E++ GRG +RA VEE Sbjct: 198 VLQNPAVSIDEIMGVMPAPDFPTGGIICGYR-GIKEAFHTGRGRLLLRAVIRVEENEENP 256 Query: 265 -SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPD 323 ++V EIPY V KSRLIE+IA+LI +K I + D+RDES +D +L R + Sbjct: 257 DKQRLIVDEIPYNVNKSRLIEQIADLINSKTITGIADLRDESDKDGMRILIELKRGEIVE 316 Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383 +++ +F SD++ F NM L G +P+VM + ++ W+ HR EV+ RR+ F + Sbjct: 317 VILNQLFKYSDLQITFGCNMLALDKG-LPKVMNVKQLIAAWVDHRIEVVRRRTRFELNKA 375 Query: 384 DRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAILNLRLRSLR 440 + R IL+G L A ++DE++ +IR N ++ + ++ RF LTE Q +A+L+L+L L Sbjct: 376 EARAHILEGYLKAIQHMDEVVRVIRASNNREEARDELIQRFDLTERQANAVLDLKLYQLT 435 Query: 441 KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500 LE +I E LL + + + ++L S + I E+ E++ K+ GR+ Sbjct: 436 GLEYEKINEEYRELLQKIDYLRAVLASEAMVRDIIREELLEIQ----KNHRSGRK----T 487 Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DLSALHFK-EGDSL 551 ++ A+ + +I E + + IS +I+ + + ++ +H K E D++ Sbjct: 488 QIIAAESEVNMEDLIANESVIITISEDDYIKRMPVDTFREQRRGGQGIAGMHLKREEDAI 547 Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEA-IQLLIDLNHNQDIVTAFV- 607 K A T D +L+ + G+ Y L + +GR G+ I LL D+ ++ I T Sbjct: 548 KGLYVASTHDYLLIFTNLGRCYWLKVWQIPETGRKSKGKPLINLLEDIRPDEKIATVLRV 607 Query: 608 --YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVA--- 662 ++ +L+ + KG E SE RKG L + V GD V Sbjct: 608 SNFEQQAYILMATKKGIVKKTELSEFSHPRRKGIWALDI-----------VEGDEVVTAR 656 Query: 663 VVGENRKLLIFS-------IDQ--IPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWI 712 +V +++++++F+ DQ + M R +GV+ + KD V C + T + Sbjct: 657 LVSDSQQIMLFTYHGMAVRFDQGKVRPMGRTARGVKGVTLKDDTDYVVGCEAVNGTETIL 716 Query: 713 DSAGRSYNRSENDLLGWLGKRGGVG 737 + + N RGGVG Sbjct: 717 IVCENGFGKRSNVEDFRQTNRGGVG 741 >gi|261855937|ref|YP_003263220.1| DNA gyrase subunit alpha [Halothiobacillus neapolitanus c2] gi|261836406|gb|ACX96173.1| DNA gyrase, A subunit [Halothiobacillus neapolitanus c2] Length = 864 Score = 391 bits (1005), Expect = e-106, Method: Compositional matrix adjust. Identities = 245/612 (40%), Positives = 356/612 (58%), Gaps = 64/612 (10%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 V+L + YL YA+S I RA+PD RDG KPVHRR+++AM E+G D+ +KKSAR+V Sbjct: 11 VNLEDEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMRELGNDWNKPYKKSARVV 70 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGD +VYD+LVR+AQ F RY LI GQGNFG++DGD+ AA RYTE RM +V Sbjct: 71 GDVIGKYHPHGDTAVYDALVRMAQNFSMRYMLIDGQGNFGSVDGDAPAAMRYTEVRMAKV 130 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A + ++++ VDF D Y+ +SEP VFP+++PNLL NG+SGIAVGMAT+IP HN+ EI Sbjct: 131 AHELQADLEKETVDFIDNYDGSESEPSVFPARYPNLLVNGSSGIAVGMATNIPPHNLTEI 190 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 A +ALID+P+ E LL ++ GPDFPT GII I E+Y GRG +RAR E Sbjct: 191 LNATIALIDDPDTDDETLLSHVPGPDFPTAGII-NGAAGIREAYLTGRGRVVMRARTHFE 249 Query: 260 EVGR-GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKN 317 E R G I+VTE+PYQV K+RLIE+IAEL+ K+I + ++RDES +D +RIV+ + Sbjct: 250 EDDRAGKAIIIVTELPYQVNKARLIERIAELVREKKIEGITELRDESDKDGMRIVIELRR 309 Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377 L PD+++ +++ + M++ F +NM V +G P+ + L IL +L HRREV+ RR+ Sbjct: 310 GEL-PDVMLNNLYQQTQMQSVFGINM-VAIVGGQPRTLGLRDILTVFLRHRREVVTRRTI 367 Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-----NE---------------------- 410 + ++ R IL+GL +A NID +IA+I+ NE Sbjct: 368 YDLRKARERAHILEGLAVALANIDAMIALIKAAPTSNEARTALMAQNWDSGLVHALLERA 427 Query: 411 ----DKPKPVMVS-------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKE 459 +P+ + + L++ Q AIL +RL L LE+ +I E +LL E Sbjct: 428 DAAASRPESLTADFGLQPDRSYRLSQEQAQAILEMRLNRLTGLEQDKIVEEYRSLL---E 484 Query: 460 KIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEP 519 KI LL+ + + +++ IR+ E+ + + G R T D + + +I +E Sbjct: 485 KIIDLLDILRSE-SRLMQVIRD--ELVAMIEEFGDARRTEIVFDYEDLSI--EDLIAEED 539 Query: 520 ITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG- 570 V +S G+I+ S + S+ K+ D ++ + A T L+ + G Sbjct: 540 RVVTLSREGYIKTQSLSEYQSQRRGGRGKSSTRMKDEDVIEQLMVASTHAWALMFTNLGR 599 Query: 571 ----KAYTLPAG 578 K Y LP G Sbjct: 600 VYWRKVYQLPQG 611 >gi|52424913|ref|YP_088050.1| DNA gyrase subunit A [Mannheimia succiniciproducens MBEL55E] gi|52306965|gb|AAU37465.1| GyrA protein [Mannheimia succiniciproducens MBEL55E] Length = 888 Score = 391 bits (1005), Expect = e-106, Method: Compositional matrix adjust. Identities = 247/660 (37%), Positives = 377/660 (57%), Gaps = 67/660 (10%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 +++ VS+ L+ YL YA+S I RA+PD+RDG KPVHRR++ +M++ G + ++ K Sbjct: 6 QDITPVSIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMNQSGNTYNKSYVK 65 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 SAR+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG+IDGD+ AA RYTE Sbjct: 66 SARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRYTEV 125 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 RM ++ + +L +D++ VDF Y+ ++ P V P+K P+LL NG+SGIAVGMAT+IP H Sbjct: 126 RMQRITQELLTDLDKETVDFSPNYDGKEMIPDVLPTKIPSLLVNGSSGIAVGMATNIPPH 185 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 N+ E+ + LA +DN +ISI++L+++I GPDFPT +I R I E+Y+ GRG VRA Sbjct: 186 NLGEVMDGCLAYMDNEDISIDELMQFIPGPDFPTAALI-NGRRGIEEAYKTGRGKVYVRA 244 Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVL 313 + VE +G I++TEIPYQV K++L+EKI EL+ K+I + + D S E +R+ + Sbjct: 245 KASVEINDKGREQIIITEIPYQVNKAKLVEKIGELVRDKKIEGIAGVLDLSNKEGIRLEI 304 Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373 K R ++++ ++ L+ M+ F +NM L G+ P++ L I++ ++ HRREV+ Sbjct: 305 DIK-RDAVGEVVLNHLYALTQMQVTFGINMVALDHGQ-PRLFNLKQIIEAFVKHRREVVT 362 Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSR---------- 420 RR+ + ++ R IL+GL IA NID +I +IR D+ + ++SR Sbjct: 363 RRTVYELRKARERAHILEGLAIALANIDPVIELIRASKTADEARENLLSRAWSLGNVAPM 422 Query: 421 ------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLA 456 + L+E Q AIL LRL L LE +I E +L Sbjct: 423 LEAAGVDASRPDGLAAELGAHDGQYFLSETQARAILELRLHRLTGLEHEKIVEEYHEILL 482 Query: 457 EKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE 516 + ++ +L S + N++ IRE E+ KST RRT E++ A + +I Sbjct: 483 QIGELIRILTS-SVRLNEV---IREELELV-KSTYNDERRT---EITAASGDINLEDLIA 534 Query: 517 KEPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568 +E + V +S+ G+++ + + SA KE D ++ L A+T D IL S+ Sbjct: 535 QEDVVVTLSHEGYVKYQPLTDYEAQRRGGKGKSATKMKEDDFIERLLVANTHDTILCFSS 594 Query: 569 DGKAYTLPAGNLL-SGRG-HGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIV 626 G+ Y L L + RG G I ++ L N+ I T L V S + F+V Sbjct: 595 RGRLYWLKVYQLPEASRGARGRPIVNILPLEDNERI--------TAILPVASYDEDKFVV 646 >gi|116491824|ref|YP_803559.1| DNA gyrase subunit A [Pediococcus pentosaceus ATCC 25745] gi|116101974|gb|ABJ67117.1| DNA gyrase subunit A [Pediococcus pentosaceus ATCC 25745] Length = 843 Score = 391 bits (1005), Expect = e-106, Method: Compositional matrix adjust. Identities = 228/623 (36%), Positives = 366/623 (58%), Gaps = 41/623 (6%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 V+L + +L YA+S I RA+PD+RDG KPVHRRI++ M+E+G+ +KKSARIV Sbjct: 12 VNLSSQMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPEKPYKKSARIV 71 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+V+GK HPHGD ++Y+S+VR+AQ F RY L+ G GNFG++DGD AAA RYTEARM+++ Sbjct: 72 GDVMGKYHPHGDSAIYESMVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAMRYTEARMSKI 131 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 +L+ ++++ VDF++ Y+ + EP + P++FPNLL NG +GIAVGM T+IP HN+ E+ Sbjct: 132 TLEMLRDINKNTVDFQENYDGTEREPSILPARFPNLLVNGATGIAVGMTTNIPPHNLSEV 191 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 A L++N + + L+E + GPDFPTGGI++ + I ++Y G G +RA+ +E Sbjct: 192 ISAIHILMNNEDATTADLMEAVPGPDFPTGGIVM-GKSGIRKAYETGHGTIILRAKVDIE 250 Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319 G IV TE+PY V K++LIE+IAEL KRI + D+ DES D V+ R Sbjct: 251 TEKNGRERIVATELPYMVNKAKLIERIAELARDKRIEGITDVNDESDRDGLRVVIDVRRD 310 Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379 + +++ +++ ++ M+T F NM + G P+V+ L IL+ +L H+ EV+ RR+ F Sbjct: 311 VSASVVLNNLYKMTLMQTTFGFNMLAIVNG-APKVLGLKEILQHYLVHQEEVIRRRTEFD 369 Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAILNLRL 436 ++ + R IL+GL IA +IDEIIAIIRN K +++ +SL+ Q AIL++RL Sbjct: 370 LKKAEARAHILEGLRIALDHIDEIIAIIRNSQTAEVAKDKLMNNYSLSSKQAQAILDMRL 429 Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC-EIREVKEIFSKSTDLGRR 495 L LE +++ E + ++A +L + +++ N+I E+ E++E F G Sbjct: 430 VRLTGLEREKVEDEYNKVMAAITDYRDIL-AHRERINEIIYKELLEIQERF------GDE 482 Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD--------LSALHFKE 547 R T V + + +IE+E + V +++ G+I+ + + + + + Sbjct: 483 RRTELMVGEV-LSLEDEDLIEEEDVMVTLTHNGYIKRMATSEFKTQNRGGRGIQGMGVHD 541 Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTL---------------PAGNLLSGRGHGEAIQL 592 D ++ + T D +L + GK Y + P NLL G GE IQ Sbjct: 542 DDFIEHLVSTSTHDVLLFFTNAGKVYRMKGYEIPEYSRTAKGIPVINLL-GISSGENIQA 600 Query: 593 LIDL---NHNQDIVTAFVYDSTC 612 +I++ N ++D +++ +T Sbjct: 601 VINIGRDNGDEDNENRYLFFTTL 623 >gi|329117185|ref|ZP_08245902.1| DNA gyrase, A subunit [Streptococcus parauberis NCFD 2020] gi|326907590|gb|EGE54504.1| DNA gyrase, A subunit [Streptococcus parauberis NCFD 2020] Length = 842 Score = 391 bits (1005), Expect = e-106, Method: Compositional matrix adjust. Identities = 249/702 (35%), Positives = 396/702 (56%), Gaps = 33/702 (4%) Query: 12 LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71 + + N+ V+L ++ ++ YA+S I RA+PD+RDG KPVHRRI++ M+E+G+ Sbjct: 1 MQDRNLIDVNLTKEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKP 60 Query: 72 FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131 KKSARI G+V+GK HPHGD S+Y+++VR+AQ + R+ L+ G GNFG++DGD AAA RY Sbjct: 61 HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRY 120 Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191 TEARM+++A +L+ ++++ VDF++ Y+ + EP+V P++FPNLL NG +GIAVGMAT+I Sbjct: 121 TEARMSKIALEMLRDINKNTVDFQENYDGSEREPLVLPARFPNLLVNGATGIAVGMATNI 180 Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251 P HN+ E +A +++NPE++ L+E I GPDFPTG +++ R I +Y GRG Sbjct: 181 PPHNLGESIDAVKLVMENPEVTTRDLMEVIPGPDFPTGAMVM-GRSGIHRAYDTGRGSIV 239 Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVR 310 +R+R +E G IVVTE PY V K+++ E I L KRI + +RDES E VR Sbjct: 240 LRSRTEIETTKNGRERIVVTEFPYGVNKTKVHEHIVRLAQDKRIEGITAVRDESNREGVR 299 Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370 V+ + R ++++ ++F L+ ++T F NM + G VP+++ L I+ ++ H++E Sbjct: 300 FVIEVR-RDASANVILNNLFKLTSLQTNFSFNMLAIENG-VPKILSLRQIIDNYILHQKE 357 Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQ 427 V+ RR+ F + R IL+GLLIA ++DE+IAIIR + ++ RF L+E Q Sbjct: 358 VITRRTQFDKDKAEARAHILEGLLIALDHLDEVIAIIRKSQTDVIAQAELMQRFELSERQ 417 Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487 AIL++RLR L LE +I+SE D L+A + +L+ ++ I E+ EVK Sbjct: 418 SQAILDMRLRRLTGLERDKIQSEYDALIALIADLADILSKPERVQTIIIEEMDEVKR--- 474 Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSVD 539 K D R EV + + +IE+E + + +SN G+I+ L K Sbjct: 475 KYADARRTELMVGEVL----SLEDEDLIEEEDVLITLSNMGYIKRLAQDEFRAQKRGGRG 530 Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS-GR-GHGEAIQLLIDLN 597 + + D ++ + T D +L + G+ Y L A + GR G I L+ L+ Sbjct: 531 VQGTGVNDDDFVRELVSTSTHDTLLFFTNKGRVYRLKAYEIPEYGRTAKGLPIVNLLKLD 590 Query: 598 HN---QDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK-GKTFLKVSSEEKMKLV 653 Q I+ A + K ++KG + N R+ G L + ++++ V Sbjct: 591 DGETIQTIINARKVEVADKYFFFTTKGGVVKRTSASEFNNIRQNGLRALNLKEDDELINV 650 Query: 654 VKVTGDHVAVVGENRKLLI-FSIDQIPEMSRG----KGVRLQ 690 + G ++G + F+ I M R +GV+L+ Sbjct: 651 LLTDGTEDIIIGTRSGYSVRFNESSIRNMGRSATGVRGVKLR 692 >gi|329894505|ref|ZP_08270319.1| DNA gyrase subunit A [gamma proteobacterium IMCC3088] gi|328923030|gb|EGG30355.1| DNA gyrase subunit A [gamma proteobacterium IMCC3088] Length = 858 Score = 391 bits (1005), Expect = e-106, Method: Compositional matrix adjust. Identities = 239/602 (39%), Positives = 349/602 (57%), Gaps = 56/602 (9%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 V++ L++ YL YA+S I RA+PD+RDG KPVHRR++ AM+E+ D+ A+KKSAR+V Sbjct: 11 VNIEDELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELSNDWNKAYKKSARVV 70 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG+IDGDSAAA RYTE RM ++ Sbjct: 71 GDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRMRKI 130 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A +L +D++ VDF D Y+ + P V P++ PNLL NG+SGIAVGMAT+IP HN+ E+ Sbjct: 131 AHAMLADLDKETVDFVDNYDGTEKIPAVLPTRIPNLLINGSSGIAVGMATNIPPHNMTEV 190 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW-CV 258 A +AL++NPEI+I++L+E+I GPDFPTG II R I+++YR GRG VRA+ + Sbjct: 191 VSACMALLNNPEITIDELMEHIPGPDFPTGAII-SGRAGILQAYRTGRGRIYVRAKAEVI 249 Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318 + + I++ EIPYQ+ K+RLIE+IAEL+ K+I + ++RDES +D V+ R Sbjct: 250 TDEAKNRDTIIIHEIPYQLNKARLIERIAELVKEKKIEGISELRDESDKDGLRVVIELKR 309 Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378 D+++ +++ + +++ F +NM L G+ P+VM L I+ +L HRREV+ RR+ + Sbjct: 310 GEMGDVVLNNLYAQTQLQSVFGINMVALENGQ-PKVMNLKEIIDAFLRHRREVVTRRTIY 368 Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRN----------------------------- 409 ++ R +L+GL IA NID II +I+N Sbjct: 369 LLRKARERGHLLEGLAIALANIDPIIELIKNSPSPADAREGLLAKVWSPGDVVAMLEQAG 428 Query: 410 EDKPKP--------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKI 461 ED +P + + L+ Q AIL LRL L LE ++ +E L E Sbjct: 429 EDACRPDGLEDHYGLHDGMYRLSPAQAQAILELRLHRLTGLEHEKLLNEYQEKLKEIADY 488 Query: 462 DSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPIT 521 +L + I E+ EV E F G R T S+ D + + +I E Sbjct: 489 LHILGDSDRLKQVIREELEEVVEEF------GDERLTEIVDSQHDLSV--EDLITPEDRV 540 Query: 522 VVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573 V IS+ G+ ++ + + SA K+ D ++ L A T IL + GK Y Sbjct: 541 VTISHGGYAKTQPLSDYQAQRRGGMGKSATAVKDEDFVEHLLVASTHSTILCFTNLGKVY 600 Query: 574 TL 575 L Sbjct: 601 WL 602 >gi|81427622|ref|YP_394619.1| DNA gyrase, A subunit [Lactobacillus sakei subsp. sakei 23K] gi|78609261|emb|CAI54308.1| DNA gyrase, A subunit [Lactobacillus sakei subsp. sakei 23K] Length = 857 Score = 391 bits (1005), Expect = e-106, Method: Compositional matrix adjust. Identities = 211/568 (37%), Positives = 345/568 (60%), Gaps = 20/568 (3%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 ++ V+L + + +L YA+S I RA+PD+RDG KPV RRI++ MSE+G+ +KKSA Sbjct: 11 IENVNLSKTMRKSFLEYAMSVIVARALPDVRDGLKPVQRRILYGMSELGVTPEKPYKKSA 70 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 RIVG+V+GK HPHGD ++Y+++VR+AQ F RY L+ G GNFG++DGD AAA RYTEARM Sbjct: 71 RIVGDVMGKYHPHGDSAIYEAMVRMAQEFSYRYMLVDGHGNFGSVDGDGAAAMRYTEARM 130 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 +++A +L+ ++++ +D+ Y+E + EP V P++FPNLL NG +GIAVGM T+IP HN+ Sbjct: 131 SKMAVEMLRDINKNTIDYVPNYDESEREPAVLPARFPNLLVNGATGIAVGMTTNIPPHNL 190 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ A L+DNP+ + L++ + GPDFPTGG+++ + I +Y G+G +RA+ Sbjct: 191 AEVISAIHILMDNPDATTADLMDALPGPDFPTGGLVM-GKSGIRHAYESGKGTITLRAKV 249 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316 VE G I+VTEIPY V K++L+E+IAEL KR+ + D+ DES D ++ Sbjct: 250 DVEVKKNGRERIIVTEIPYMVNKAKLVERIAELARDKRLEGITDLNDESDRDGMRIVIDV 309 Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376 R + +++ +++ L+ ++T F NM + G P+V+ L IL+ +L H+ EV+ RR+ Sbjct: 310 RRDMSASVILNNLYKLTPLQTSFSFNMVAIVNG-APKVLSLKSILEHYLVHQEEVIRRRT 368 Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAILN 433 F ++ + R IL GL IA +ID II IIR+ D K +++ R+ L++ Q AIL+ Sbjct: 369 EFDLKKAEARAHILAGLRIALDHIDAIIQIIRSSKTGDTAKVLLMERYDLSDKQAQAILD 428 Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493 +RL L LE ++++E +NL+A + +L ++ I E+ E++ F G Sbjct: 429 MRLVRLTGLERDKVENEYNNLMALITDLKDILAKPERIKKIIYDELLEIQSKF------G 482 Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD--------LSALHF 545 +R T V + + +IE+E + + +++ G+I+ L + + + Sbjct: 483 DKRRTELLVGEV-LSIEDEDLIEEEDVVIALTHNGYIKRLPASEFKVQNRGGRGIQGMGV 541 Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAY 573 + D ++ + T + +L + GK Y Sbjct: 542 HDDDFIEHLISTSTHEVLLFFTNTGKVY 569 >gi|254417991|ref|ZP_05031715.1| DNA gyrase, A subunit [Brevundimonas sp. BAL3] gi|196184168|gb|EDX79144.1| DNA gyrase, A subunit [Brevundimonas sp. BAL3] Length = 927 Score = 391 bits (1005), Expect = e-106, Method: Compositional matrix adjust. Identities = 250/693 (36%), Positives = 380/693 (54%), Gaps = 63/693 (9%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 ++ +++ L+ YL YA+S I RA+PD RDG KPVHRRI+++M ++ + ++ K Sbjct: 21 DISTITIEDELKRSYLDYAMSVIVSRALPDARDGLKPVHRRILYSMHDLNMTPERSYSKC 80 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 AR+VG+V+G+ HPHGD SVY +LVR+AQPF L+ GQGNFG++DGD A+ RYTEA+ Sbjct: 81 ARVVGDVLGRFHPHGDASVYMALVRMAQPFSMGLMLVDGQGNFGSVDGDMPASMRYTEAK 140 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 M A ++ +D+D VDF+ Y+E++ EPVV PS+ PNLL NG GIAVGMAT+IP HN Sbjct: 141 MAPAAVALMADIDKDTVDFQPNYDEKELEPVVLPSRIPNLLVNGAGGIAVGMATNIPPHN 200 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 + E+ +AALAL+D+P ++ + LL+ + GPDFPTGG I+ R + + R GRG VR R Sbjct: 201 LGEVVDAALALLDDPNVTDDALLDIVPGPDFPTGGEIM-GRTAPRNALRDGRGSVIVRGR 259 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLF 314 VEE+ + IVVTE+PYQV K LIE+IAE++ KR+ + D+RDES + +RIV+ Sbjct: 260 ASVEEIRKDREAIVVTELPYQVNKQTLIERIAEMVREKRLEGISDVRDESDRQGMRIVIE 319 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K R D+++ ++ + M++ F +NM L+ GR P+ M L +L+ +L R EV+ R Sbjct: 320 LK-RDASGDVILNQLWRYTAMQSSFGVNMLALNHGR-PEQMGLRDLLQIFLDFREEVVVR 377 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN-----------EDKPKPV--MVS-- 419 R F + R +L GL +A NIDE+I IIR+ + KP PV M++ Sbjct: 378 RVKFELNKARDRGHVLVGLAVAVANIDEVIHIIRSSADPTEARERLQAKPWPVGDMMALV 437 Query: 420 --------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLL 465 LT+ Q AIL L L L L I E + L + ++L Sbjct: 438 ELIADPRSVVINGDSLQLTDEQARAILALTLSRLTGLGRDDIFGEANGLADTIQGHLTIL 497 Query: 466 NSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVIS 525 + K I ++ +VK+ F+ RRT E D + +I +E + V ++ Sbjct: 498 SDRKNVLAIIRDDLIDVKDKFAVP-----RRTLIGE---GDGEMEDEDLIPREDMVVTVT 549 Query: 526 NRGWIRSLKSHSVDL--------SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT--- 574 + G+++ + ++ S + K+ D++ A T +L +T+GKAY Sbjct: 550 HGGYVKRVALNAYRTQHRGGKGKSGMTMKDEDAITGVFSASTHTPVLFFATNGKAYKLKT 609 Query: 575 --LPAGNLLSGRGHGEAIQLLIDLNHNQDI--VTAFVYDSTC----KLLVVSSKGNAFIV 626 LP GN S G+A L+ + I V D T ++ +S G+ Sbjct: 610 WRLPLGNPQS---RGKAFVNLLPIEPGDSIMNVLPLPEDETTWGDYDIMFATSSGDVRRN 666 Query: 627 EESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD 659 + S+ R GK +K+ +++M V T D Sbjct: 667 KLSDFATVNRAGKIAMKLEGDDRMVGVGLCTAD 699 >gi|239980781|ref|ZP_04703305.1| DNA gyrase subunit A [Streptomyces albus J1074] gi|291452639|ref|ZP_06592029.1| subunit A [Streptomyces albus J1074] gi|291355588|gb|EFE82490.1| subunit A [Streptomyces albus J1074] Length = 875 Score = 391 bits (1005), Expect = e-106, Method: Compositional matrix adjust. Identities = 235/627 (37%), Positives = 360/627 (57%), Gaps = 35/627 (5%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 V+ V L ++ YL YA+S I RA+PD+RDG KPVHRR+++AM + G F K A Sbjct: 25 VEPVGLETEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMYDGGYRPEKGFYKCA 84 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+V+G HPHGD S+YD+LVRLAQP+ R PL+ GNFG+ D AAA RYTE +M Sbjct: 85 RVVGDVMGNYHPHGDSSIYDALVRLAQPWSMRMPLVDSNGNFGSPGNDPAAAMRYTECKM 144 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 ++ +++ +DE+ VDF D Y+ EP V P++FPNLL NG++GIAVGMAT+IP HN+ Sbjct: 145 APLSMEMVRDIDEETVDFTDNYDGRSKEPSVLPARFPNLLINGSAGIAVGMATNIPPHNL 204 Query: 197 QEICEAALALIDNPEIS----IEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252 +E+ A ++NPE ++ L+E I GPDFPTG ++V R+ I E+YR GRG + Sbjct: 205 REVAAGAQWYLENPEADPDTLLDALIERIKGPDFPTGALVV-GRKGIEEAYRTGRGSITM 263 Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV--R 310 RA VEE+ + C+VVTE+PYQV L +KIA+L+ RI + D+RDE++ R Sbjct: 264 RAVVEVEEI-QNRQCLVVTELPYQVNPDNLAQKIADLVKDARIGGIADVRDETSSRTGQR 322 Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370 +V+ K R +++ +++ +D++T F NM L G VP+ + LD ++ W+AH+ E Sbjct: 323 LVIVLK-RDAVAKVVLNNLYKHTDLQTNFGANMLALVDG-VPRTLSLDAFIRHWVAHQIE 380 Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQ 427 V+ RR+ FR++ + R IL+GLL A IDE+IA+IR D + ++ + E Q Sbjct: 381 VIVRRTRFRLRKAEERAHILRGLLKALDAIDEVIALIRASQTVDVARGGLMELLEIDEIQ 440 Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487 +AIL ++LR L LE +I +E D+L A+ ++ +++L S ++Q I+ E+ + + F Sbjct: 441 ANAILEMQLRRLAALERQKIVAEHDDLQAKIDEYNAILASPERQRQIISEELAAIVDKFG 500 Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVD 539 + RR+ D + +I +E I V I+ G++ RS K Sbjct: 501 ED-----RRSALVPF---DGDMSIEDLIAEEDIVVTITRGGYVKRTKTDDYRSQKRGGKG 552 Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS-GR-GHGEAIQLLIDLN 597 + KE D + + T +L + G+ Y A L GR G+ + L+ Sbjct: 553 VRGTKLKEDDIVDHFFVSTTHHWLLFFTNKGRVYRAKAYELPDVGRDARGQHVANLLAFQ 612 Query: 598 HNQDIVTAFV---YDSTCKLLVVSSKG 621 ++ I YD+ LV+ +KG Sbjct: 613 PDESIAQILAIRDYDA-APYLVLGTKG 638 >gi|255535202|ref|YP_003095573.1| DNA gyrase subunit A [Flavobacteriaceae bacterium 3519-10] gi|255341398|gb|ACU07511.1| DNA gyrase subunit A [Flavobacteriaceae bacterium 3519-10] Length = 884 Score = 391 bits (1005), Expect = e-106, Method: Compositional matrix adjust. Identities = 252/759 (33%), Positives = 426/759 (56%), Gaps = 48/759 (6%) Query: 26 LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85 ++ Y+ Y++S I RA+PD+RDG KPVHRR+++ M + + KSARIVG+V+GK Sbjct: 17 MKSSYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMYGLNVFSNRKHLKSARIVGDVLGK 76 Query: 86 LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145 HPHGD SVYD++VR+AQP+ RYP + GQGNFG++DGD AA RYTEA++ ++++ IL Sbjct: 77 YHPHGDSSVYDAMVRMAQPWSLRYPQVDGQGNFGSMDGDPPAAMRYTEAKLKKISDEILA 136 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 +D+D VDF++ +++ +EP V P+K P LL NGTSGIAVGMAT++ HN+ E +A +A Sbjct: 137 DLDKDTVDFQNNFDDSMTEPTVMPTKIPTLLVNGTSGIAVGMATNMAPHNLSESIDAIVA 196 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265 IDN EI+I++L+++II PDFPTGGII + + +++ GRG +RA+ EEVG S Sbjct: 197 YIDNKEITIDELMKHIIAPDFPTGGIIY-GYDGVRDAFHTGRGRIVLRAKINFEEVGNRS 255 Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLFPKNRSLDPDL 324 I+VTEIPYQV K+ +I + AEL+ ++IP + +IRDES + +RIV K+ ++ P++ Sbjct: 256 -AIIVTEIPYQVNKAEMIARTAELVKDEKIPGIYEIRDESDRQGLRIVYELKHDAI-PNV 313 Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384 ++ ++ + ++T F +N L GR P+ + L I+ ++ HR EV+ RR+ F ++ Sbjct: 314 VLNMLYKYTSLQTSFSVNNIALVKGR-PEQLNLKNIIHHFVDHRHEVVIRRTEFELKKAK 372 Query: 385 RRVEILKGLLI---AYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVDAILNLRLRS 438 R IL+G + ++D+ IAIIR+ P K ++ F L++ Q AIL+LRL Sbjct: 373 ERAHILEGFMKVIGTQDDLDKAIAIIRHSSNPAEAKDGLMKEFDLSDLQAQAILDLRLAR 432 Query: 439 LRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTT 498 L +E +I++E D ++ + +L + +++ I E+ E+KE + G R + Sbjct: 433 LTGMELDKIRAEYDEIMNLIRDFEDILANESRRFEIIKAELIEMKEKY------GDERRS 486 Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSVDL------SALHFKEGDS 550 + S + + + +I E + + IS+ G+I+ SL + V A ++ D Sbjct: 487 EIDYSGGEMSI--EDLIPDEKVVLTISHAGYIKRTSLSEYKVQTRGGVGNRAATTRDEDF 544 Query: 551 LKIALHAHTTDRILLLSTDGKAYTL-----PAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605 L+ + A +L + GK + L P G+ +S G A+Q LI++ + D + A Sbjct: 545 LEYIVAATNHQYMLFFTEKGKCFWLRVFEIPEGSKIS---KGRAVQNLINIEPD-DKIKA 600 Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTR---------KGKTFLKVSSEEKMKLVVKV 656 ++ + K ++ N +V ++ I T G +++ +++ Sbjct: 601 YIRTNDLKDAEYINQMNVVMVTKNGTIKKTSLEAYSRPRTNGVNAIEIRDNDQLLGARLT 660 Query: 657 TGD-HVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGG-ISDVICFKICEGLTWID 713 +GD + + +N K + F ++ + RG GVR S +D + +I E T + Sbjct: 661 SGDSEIMIATKNGKCIRFPEEKARAVGRGSIGVRGISLEDDDEVIGMIVVNDVENETVLV 720 Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752 + + Y + + RGG G + ++G ++ Sbjct: 721 VSEKGYGKRTAVEDYRVTNRGGKGVITLNITEKTGNLIA 759 >gi|83858658|ref|ZP_00952180.1| DNA gyrase subunit A [Oceanicaulis alexandrii HTCC2633] gi|83853481|gb|EAP91333.1| DNA gyrase subunit A [Oceanicaulis alexandrii HTCC2633] Length = 923 Score = 391 bits (1005), Expect = e-106, Method: Compositional matrix adjust. Identities = 259/767 (33%), Positives = 400/767 (52%), Gaps = 87/767 (11%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 V++ ++ YL YA+S I RAIPD RDG KPVHRRI+ AM E G A+KKSA +V Sbjct: 14 VAIEDEMKRSYLDYAMSVIVSRAIPDARDGLKPVHRRILWAMHEGGYSKDKAYKKSANVV 73 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+V+G+ HPHGD ++YD+L R+AQPF PL+ GQGNFG++DGD AA RYTE RM Sbjct: 74 GDVMGRYHPHGDSAIYDALARMAQPFSMGLPLMDGQGNFGSMDGDPPAAMRYTEIRMDHP 133 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 AE +L +D+D V+FRD Y+ EPVV P+++PNLL NG GIAVGMAT+IP HN+ E+ Sbjct: 134 AEALLADIDKDTVEFRDNYDGSKQEPVVLPARYPNLLVNGAGGIAVGMATNIPPHNLNEV 193 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIV---ESRESIVESYRLGRGGFRVRARW 256 +A +AL+D P+I+ +LLE++ PDFPTGG I+ +R++++E GRG +RA+ Sbjct: 194 VDATVALLDQPDITDTELLEFVPAPDFPTGGEIIGRSGARKALLE----GRGSVILRAKT 249 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFP 315 +E++ +G I+V EIPYQV K+ ++EKIAEL+ KRI + D+RDES VR+V+ Sbjct: 250 SIEDIRQGREAIIVHEIPYQVNKATMVEKIAELVRDKRIEGISDLRDESDRSGVRVVIEL 309 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 K + + ++++ ++ S ++T F +NM L GR PQ L L+ ++ HR+EV+ RR Sbjct: 310 K-KDANAEVILNQLYRWSPLQTSFGVNMLALIGGR-PQQAGLRVFLETFIHHRKEVVVRR 367 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP-------------------- 415 + F ++ R +L GL +A NIDEIIA+IR P+ Sbjct: 368 TKFDLRKARDRAHVLIGLAVAVANIDEIIALIRRAPDPQTARQQLRDKAWPAKDVAPLVE 427 Query: 416 --------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467 + LTE Q AIL+LRL L L +I E + L + +L S Sbjct: 428 LVADPRSQIRDGEIRLTEEQAKAILDLRLHRLTALGRDEIGDEANKLAETIADLLDILRS 487 Query: 468 GKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNR 527 + + I E+ + K F RR+ E D + +I +E + V +++ Sbjct: 488 PTRIRDIIRNELLDSKASFGVE-----RRSAIIE---GDLGIEDEDLIPREDMVVTLTHG 539 Query: 528 GWIR--SLKSHSVD------LSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYT 574 G+++ +L ++ + + K+ D + A T +L S+DG K + Sbjct: 540 GYVKRTALSTYRAQNRGGKGRAGMAMKDEDFVATLFVASTHAPLLFFSSDGMVYKTKTWR 599 Query: 575 LPAG----------NLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAF 624 LP G NLL G I ++ L +++ + ++ ++ G Sbjct: 600 LPLGAPNTKGKYLTNLLPSLNDGAWITSVMALPEDEESWDQY------DVMFATTAGTVR 653 Query: 625 IVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD--HVAVVGENRKLLIFSIDQI---- 678 + S+ + R GK +K+ E L V++ + V +V + + F + + Sbjct: 654 RNKLSDFVQVNRNGKIAMKLDEEGSKILDVRLCNEDQDVLLVSAGGRAIRFPVGDVRVFA 713 Query: 679 PEMSRG-KGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSEN 724 S G +G+RL+ +I I + R+Y R N Sbjct: 714 SRNSTGVRGIRLKEN-----DRLISMAILNHIDVTTDEARAYMRHAN 755 >gi|297566863|ref|YP_003685835.1| DNA gyrase subunit A [Meiothermus silvanus DSM 9946] gi|296851312|gb|ADH64327.1| DNA gyrase, A subunit [Meiothermus silvanus DSM 9946] Length = 805 Score = 391 bits (1005), Expect = e-106, Method: Compositional matrix adjust. Identities = 214/559 (38%), Positives = 338/559 (60%), Gaps = 23/559 (4%) Query: 26 LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85 +++ ++ YA+STI +RA+PD+RDG KPV RRI++A + GL KSA IVGEV+ K Sbjct: 13 VKQSFINYAMSTIVDRALPDVRDGLKPVQRRILYAAQQEGLIPTRKHSKSAGIVGEVMKK 72 Query: 86 LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145 HPHGD ++YD+L RLAQP+ QRYPLI GQGNFG+IDGD AA RYTEAR++ + +L+ Sbjct: 73 YHPHGDAAIYDTLARLAQPWNQRYPLIDGQGNFGSIDGDPPAAQRYTEARLSSIGYEMLR 132 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 +D++ V+F Y+ +P V P+ PNLL NG++GIAVGMATSIP HN+ E+ +A +A Sbjct: 133 DIDKETVNFYPNYDGTTEQPEVLPAAIPNLLVNGSTGIAVGMATSIPPHNLSEVIDALVA 192 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265 LID P +S++++++ + GPDFPTG + SR+ I E+Y GRG +VRA+ E+ G Sbjct: 193 LIDQPGLSLDEIMKLLPGPDFPTGARL--SRKGIREAYASGRGSLKVRAKVRNED-KNGR 249 Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325 +V TEIPYQV K+ LI +IA L K I + +RDES + R +P ++ Sbjct: 250 AMLVFTEIPYQVNKADLIAQIAGLAKNKVIEEIAALRDESDRQGMRIAVELKRGANPQVV 309 Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385 + ++ S ++ F +N+ + G P+V+ L +L+ +L HRREV++RR+ + + + Sbjct: 310 LNKLYKHSRLQASFTVNLLAIVNGE-PKVLSLPELLRHYLNHRREVVYRRTQYELSEAKK 368 Query: 386 RVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKL 442 R +L+GLLIA +IDE+IA+IR + ++ + +++RF+L++ Q AIL++RL+ L L Sbjct: 369 RAHVLEGLLIALDHIDEVIALIRGSADANEARTGLIARFALSDIQAQAILDMRLQRLVGL 428 Query: 443 EEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEV 502 E +++ E L + ++L K+ W + E+ E+K + + RRT E Sbjct: 429 EREKLQEEYRELQETIAYLSAILQDEKRLWGVVKEELLEIKNKYGDA-----RRTQLTEF 483 Query: 503 SRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIA 554 ++ + +IE EP+ + ++++G++ R+ V A KE D Sbjct: 484 ---EEGFNPEDLIEDEPMVITLTSQGFLKRTPLEAYRAQGRGGVGAQAGKTKEEDEAVQV 540 Query: 555 LHAHTTDRILLLSTDGKAY 573 A D +L + G+ Y Sbjct: 541 FVASMHDDLLFFTNRGRVY 559 >gi|325106677|ref|YP_004267745.1| DNA topoisomerase (ATP-hydrolyzing) [Planctomyces brasiliensis DSM 5305] gi|324966945|gb|ADY57723.1| DNA topoisomerase (ATP-hydrolyzing) [Planctomyces brasiliensis DSM 5305] Length = 785 Score = 391 bits (1004), Expect = e-106, Method: Compositional matrix adjust. Identities = 250/719 (34%), Positives = 391/719 (54%), Gaps = 48/719 (6%) Query: 4 DNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM-S 62 D +N + + VSL RYL YA S I+ RA+PD+RDG KPV RRI++ M Sbjct: 6 DADTNGQRDETDRIHYVSLSDETRRRYLNYAYSVIQSRALPDVRDGLKPVQRRILYVMYH 65 Query: 63 EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122 ++ L + +K A+I G+ G HPHGD SVYD+LVRLAQ F R PLI GQGNFG+I Sbjct: 66 DLRLTADSKPRKCAKITGDTTGNYHPHGDASVYDALVRLAQDFTLREPLIDGQGNFGSII 125 Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182 G AA RYTEA++T +A ++ + V+ R+ Y+ EPVV PS+FP+LL NGT G Sbjct: 126 GLPPAAARYTEAKLTPIAAELMSELRYQTVEMRENYDGMRQEPVVLPSRFPHLLVNGTQG 185 Query: 183 IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242 IAVGMATSIP HN+ E+ +A L LIDNP+ ++ +L++Y+ PDFP GG IV R + + Sbjct: 186 IAVGMATSIPPHNLHEVVKACLHLIDNPDATVAQLMKYVKAPDFPLGGRIVTDRRELRNT 245 Query: 243 YRLGRGGFRVRARWCVEEV--GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300 Y GRG +VR W +++ G+ +V+T IPY V+ L+ + + +K++P L Sbjct: 246 YETGRGSIKVRGEWEFDKLHKGKNRNRLVITSIPYNVETGPLMTDLGTIAESKKLPQLVT 305 Query: 301 IRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLD 358 + DES E+ +R+VL K+ + D + +M ++ + +E F N L + P Sbjct: 306 VADESNEELGMRLVLEVKHEN-DAEDVMAFLYKHTALEQNFAFNATCLVPDEAGTLFPAQ 364 Query: 359 GILKEWLAH----RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---- 410 LKE L H R EV+ +R F + +++R+ IL+G I + +D+ + +IR+ Sbjct: 365 CNLKEMLQHFLTFRMEVVRKRLEFLLAQLEKRIHILEGFEIVFSGLDKALRLIRSSKGKA 424 Query: 411 DKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQ 470 D + +M + F L E Q DAIL + L + +LE +I EL AE E++ LL S + Sbjct: 425 DAAQKLMKA-FPLDEIQTDAILEMALYRISELEIDRIIEELKEKRAEAERLRKLLASETK 483 Query: 471 QWNQIACEIREVKEIFSKSTDLGRRRTTFC---EVSRADKATLQQAMIEKEPITVVISNR 527 W IA E+ E+ + + +RRT E++ D + A I KE VV+++ Sbjct: 484 MWRLIADELGELGKTYGN-----KRRTGLGSSEEIAEFDPS----AYIVKENTNVVLTSD 534 Query: 528 GWIRSL-KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH 586 GWI+ + + SVD + +EGD++ L A T D+I+ + DG AYTLP + + G+ Sbjct: 535 GWIKRVGRIQSVD--KMRVREGDTVINVLPASTLDQIVFFADDGTAYTLPIDQIPASSGY 592 Query: 587 GEAIQLLIDLNHNQDIVTAFVYDSTCK-------------LLVVSSKGNAFIVEESEI-I 632 GE + I L IV D LL+ + G + S Sbjct: 593 GEPLAKHIKLADGAKIVHGITTDPRFTPEDDSDEESPLPYLLIATEMGQVMAISFSSFRP 652 Query: 633 ANTRKGKTFLKVSSEEKMKLVVKVTGDHVA--VVGENRKLLIFSIDQIPEMS-RGKGVR 688 +T+ G+ + +++ +K+ + V + +H + E +++ F + ++P ++ G+GV+ Sbjct: 653 PSTKVGRKYCRLAKGDKV-VFVDLIREHYTMFLATEQARVIHFELAEVPLLAGPGRGVK 710 >gi|320527133|ref|ZP_08028320.1| DNA gyrase, A subunit [Solobacterium moorei F0204] gi|320132461|gb|EFW25004.1| DNA gyrase, A subunit [Solobacterium moorei F0204] Length = 860 Score = 391 bits (1004), Expect = e-106, Method: Compositional matrix adjust. Identities = 235/679 (34%), Positives = 382/679 (56%), Gaps = 32/679 (4%) Query: 30 YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89 +L Y++S I RA+PD+RDG KPV RRI+++M EM + A++KSARIVG+ +GK HPH Sbjct: 32 FLEYSMSVIVSRALPDVRDGLKPVQRRILYSMHEMNIGPDKAYRKSARIVGDTMGKYHPH 91 Query: 90 GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDE 149 GD S+Y +LV LAQP+ R L+ G GNFG++DGD AA RYTEARM+++A +L+ +++ Sbjct: 92 GDSSIYGALVYLAQPWNMRTVLVDGHGNFGSMDGDDPAAMRYTEARMSKIAVEMLRDLEK 151 Query: 150 DAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDN 209 D VD D Y+ ++ EP V PS++PNL+ NG+SGIAVGMAT++ HN+ E + A++DN Sbjct: 152 DTVDMIDNYDGQEKEPTVLPSRYPNLIVNGSSGIAVGMATNVAPHNLGETIDGIFAVMDN 211 Query: 210 PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIV 269 PEI+ +L+ Y+ GPDFPTG I+ R I +++ GRG +RA+ +EE+ G IV Sbjct: 212 PEITATELMNYMKGPDFPTGAYIL-GRSGIRQAFETGRGSVIMRAKTKIEEMPNGKSRIV 270 Query: 270 VTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESI 329 V E+PY V K+ L+E+IA L+ K I + D+RDES D V+ + + PD+++ + Sbjct: 271 VYELPYMVNKASLVERIATLVRDKVIEGITDLRDESNMDGIRVVIELRKDIQPDVMLNQL 330 Query: 330 FMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEI 389 + + +++ F +N NV+ VP+ + +LK ++A + EV+ RR+ F ++ R I Sbjct: 331 YRSTPLQSNFGVN-NVVLFNGVPRQASMIDLLKGYIAFQDEVIVRRTQFDLKKAQDRAHI 389 Query: 390 LKGLLIAYLNIDEIIAIIRNEDKPK---PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQ 446 L+GL IA N+D II IR+ P P ++ F L E Q AIL+++ R L LE + Sbjct: 390 LEGLRIAVDNLDAIIHTIRDSRDPNEAMPRLMEGFGLDEIQAKAILDMQFRRLTGLEREK 449 Query: 447 IKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRAD 506 I++E +LL + +L++ + I E+ EVK F+ RR+ E+ A Sbjct: 450 IENEYQDLLIKIADFQDILSNHARVLQIIRDELSEVKAKFNDP-----RRS---EIIDAI 501 Query: 507 KATLQQAMIEKEPITVVISNRGWIRSLKSHSVD--------LSALHFKEGDSLKIALHAH 558 + +I E I + +S+ G+I+ L + + + + + D + + Sbjct: 502 ADVEDEDLIPVENIIITLSSNGYIKRLTTDTYHVQNRGGKGIKGMELHKDDIIDQFISMS 561 Query: 559 TTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDI--VTAFVYDSTCKL 614 T D +L+ + GK Y + N+ S G LI + ++I + + D K Sbjct: 562 THDHLLVFTDKGKVYRIKGYNVPEFSRTSKGIPAINLISMEKTENIRALVPYSQDHDSKF 621 Query: 615 LVVSSKGNAF---IVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKL 670 L +K +E E I + GK +K++ ++++ V G+ + + G N K Sbjct: 622 LFFVTKQGIIKRTTFDEYENI--NKNGKIAIKLNEDDELAFVRSTDGNAEIIIAGSNGKA 679 Query: 671 LIFSIDQIPEMSR-GKGVR 688 + F + + + R +GV+ Sbjct: 680 VRFLENTVRPLGRTARGVK 698 >gi|224541293|ref|ZP_03681832.1| hypothetical protein CATMIT_00453 [Catenibacterium mitsuokai DSM 15897] gi|224525797|gb|EEF94902.1| hypothetical protein CATMIT_00453 [Catenibacterium mitsuokai DSM 15897] Length = 815 Score = 391 bits (1004), Expect = e-106, Method: Compositional matrix adjust. Identities = 258/765 (33%), Positives = 429/765 (56%), Gaps = 43/765 (5%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 + +K + L +++ ++ YA+S I RA+PD +DG KPV RRIIH M+E+G +K Sbjct: 3 QRGIKDIQLTGEMKKSFMEYAMSVIVARALPDAKDGLKPVQRRIIHGMNELGCYSDKPYK 62 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSARIVGEV+GK HPHGD S+Y++LVR+AQ F RY L+ G GNFG+IDGD AAA RYTE Sbjct: 63 KSARIVGEVMGKYHPHGDSSIYEALVRMAQGFSYRYMLVDGHGNFGSIDGDGAAAMRYTE 122 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 +RM+++A +++ +++D VDF Y+ E+ EP V PS+ PNLL NG++GIAVGMAT+IPS Sbjct: 123 SRMSKIAMEMVRDINKDTVDFVPNYDGEEKEPNVLPSRIPNLLINGSTGIAVGMATNIPS 182 Query: 194 HNVQEICEAALALIDNPEISIEKLLE-YIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252 HN+ E+ +A LA+ NP+I+I +L++ YI GPDFPTG I+ R +I ++Y G G + Sbjct: 183 HNLGEVVDAILAVSKNPDITITELMDNYIPGPDFPTGAYIL-GRGAIKKAYETGNGLIVM 241 Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRI 311 RA+ +E++G I+VTE+PY V K+RLIEKIA + K I + ++RDES E +RI Sbjct: 242 RAKTDIEDIGSNKKAIIVTELPYMVNKARLIEKIAAHVKEKNIDGITELRDESDREGIRI 301 Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371 V+ + R + P++++ ++ L+ ++T F +N N+ + P+ + L ++ +L H+ +V Sbjct: 302 VIELR-RDVQPEVILNQLYKLTALQTTFGVN-NIALVNGEPKTLSLKEMINVYLEHQEDV 359 Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQV 428 + RR+ F ++ + R IL GL A ID II +IR+ + + ++ F ++E Q Sbjct: 360 IRRRTLFDLKKAEDRAHILDGLKRAIDQIDAIINLIRSSRTTEIIQQRLMDEFDMSERQA 419 Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488 AI ++L+ L LE +I++EL+ LL E I L + + IA +E+ EI +K Sbjct: 420 KAIREMQLQRLAGLEREKIENELNTLL---ETIADLKDILANKERIIAIIDQELLEIKAK 476 Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD--------L 540 D +RRT E+ + + +I +E + + ++N G+++ + + + Sbjct: 477 YGD--KRRT---EIIQGSFDIEDEDLIPEEDVVISLTNNGYVKRMPIDTYKAQNRGGKGI 531 Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNH 598 + D + ++ T D +L+ + GK Y + N+ + G I L++++ Sbjct: 532 KGMSTNNDDVVDSLMNMSTHDDLLIFTNFGKVYRMKGYNIPEFGRQAKGLPIINLLNMDK 591 Query: 599 NQDI-----VTAFVYDSTCKLLVVSSKGNAFIVEESEI--IANTRK-GKTFLKVSSEEKM 650 ++ + +T D + L V+ G +V+ + + N R+ GK L + +++ Sbjct: 592 DEQVKTMISITPSEVDESHFLFFVTKDG---LVKRTGLPEFENIRQSGKLALTLREGDEL 648 Query: 651 KLVVKVTG--DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707 + VK+T + + N K + F + + M R GV+ + D I V E Sbjct: 649 -VDVKLTNGKSEILLAAANGKAIRFDENDVRPMGRSASGVKGMNVDDSHIIGVTTN--TE 705 Query: 708 GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752 G + + Y + L KRGG G ++G+ +S Sbjct: 706 GQNILIITEKGYGKMSPLEEYRLSKRGGKGVKTVNITEKNGELVS 750 >gi|166363186|ref|YP_001655459.1| DNA gyrase subunit A [Microcystis aeruginosa NIES-843] gi|166085559|dbj|BAG00267.1| DNA gyrase subunit A [Microcystis aeruginosa NIES-843] Length = 850 Score = 391 bits (1004), Expect = e-106, Method: Compositional matrix adjust. Identities = 254/723 (35%), Positives = 402/723 (55%), Gaps = 61/723 (8%) Query: 11 TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70 T +++V L + YL YA+S I RA+PD RDG KPVHRRI++AM E+GL Sbjct: 2 TAAQDHVVPTDLSNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTPDR 61 Query: 71 AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130 F+K AR+VGEV+GK HPHGD +VYD+LVR+AQ F R PLI+G GNFG+ID D AA R Sbjct: 62 PFRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRDPLINGHGNFGSIDNDPPAAMR 121 Query: 131 YTEARMTQVA-ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189 YTE R+ +A +LQ ++ + VDF D ++ EPVV PS+ P LL NG+SGIAVGMAT Sbjct: 122 YTECRLHTLATNALLQDIESETVDFADNFDGSQQEPVVLPSRVPQLLINGSSGIAVGMAT 181 Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249 +IP HN+ EI + +ALI NP+++ +L YI GPDFPTGG I+ R+ I E+Y GRG Sbjct: 182 NIPPHNLAEIIDGTVALIHNPDLTDTELQRYIPGPDFPTGGHIL-GRDGIQEAYTTGRGS 240 Query: 250 FRVRARWCVEEV---GRGSW-CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305 +R +E + GR I++TE+PYQ K+ LIEKIA+L+ ++I + D+RDES Sbjct: 241 ITLRGVATIETIEQRGRPDRDAIIITELPYQTNKAALIEKIADLVNDRKIDGISDVRDES 300 Query: 306 AED-VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364 D +R+V+ K R P +++ +++ + +++ F NM L + P+++ L L+ + Sbjct: 301 DRDGIRVVIELK-RDAYPRVVLNNLYKQTPLQSNFGANMLAL-VDNEPRLLTLREFLRVF 358 Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRF 421 L R EV+ RR+ + ++ + R IL+GLLIA ++D +IA+IR + K +V F Sbjct: 359 LDFRVEVITRRTRYELRKAEERDHILQGLLIALASLDAVIALIRSAADTASAKEGLVQNF 418 Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSE----------LDNLLAEKEKIDSLLNSGKQQ 471 L+E Q DAIL ++LR L LE +I+ E L ++LA+KE+IDS++ QQ Sbjct: 419 GLSEVQADAILQMQLRRLTALESEKIQQEHGELLAKIGDLQDILAKKERIDSIIEEELQQ 478 Query: 472 WNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR 531 I R T + +R E++ D +QA+I +++ +G+I+ Sbjct: 479 IKTIHATPRR--------THIEQRE---GEIAETDLIANEQALI-------LVTEQGYIK 520 Query: 532 SLKSHSVD--------LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG 583 + ++ + + KE D + + D +L + G Y+L A ++ +G Sbjct: 521 RMPVNTFESQNRATRGKAGAKMKEDDGIDHFITCRDHDSVLFFTDRGVVYSLNAYHIPTG 580 Query: 584 R--GHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKG 638 G I L+++ + I + + L++++ KG FI + + + + Sbjct: 581 SRTARGVPIVQLLEIPKGEKITSVVAVSEFSEDNYLIMLTQKG--FIKKTALAAFSNIRS 638 Query: 639 KTFLKVSSE--EKMKLVVKVTGDHVAVVGENRKLLI-FSID--QIPEMSRG-KGVRLQSY 692 + +S E ++++ V + ++G + + I F D Q+ + R KGV+ Sbjct: 639 NGLIAISLEDGDQLRWVRLAKEEDSVIIGSRQGMAIHFKADSQQLRSLGRATKGVKSMKL 698 Query: 693 KDG 695 + G Sbjct: 699 RSG 701 >gi|237802613|ref|YP_002887807.1| DNA gyrase subunit A [Chlamydia trachomatis B/Jali20/OT] gi|231273847|emb|CAX10637.1| DNA gyrase subunit A [Chlamydia trachomatis B/Jali20/OT] Length = 836 Score = 391 bits (1004), Expect = e-106, Method: Compositional matrix adjust. Identities = 230/584 (39%), Positives = 339/584 (58%), Gaps = 24/584 (4%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 EE + +L ++E YL Y++S I RA+PD RDG KP RRI++AM ++ L G + Sbjct: 5 EEIIVPKNLEEEMKESYLRYSMSVIISRALPDARDGLKPSQRRILYAMKQLNLTPGVKHR 64 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 K A+I G+ G HPHG+ +Y +LVR+AQ + RYPL+ GQGNFG+IDGD AAA RYTE Sbjct: 65 KCAKICGDTSGDYHPHGESVIYPTLVRMAQDWAMRYPLVDGQGNFGSIDGDPAAAMRYTE 124 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 AR+T A +L+ +D+D VD Y+E EPVVFPSKFPNLL NG+SGIAVGMAT+IP Sbjct: 125 ARLTHSAIFLLEDLDKDTVDMVPNYDETKYEPVVFPSKFPNLLCNGSSGIAVGMATNIPP 184 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E+ EA L ++ N + SIE +LE + GPDFPTGGII + E I +Y GRG R+R Sbjct: 185 HNLGELIEATLLVLANSQTSIEDILEVMPGPDFPTGGIICGT-EGIRSTYYTGRGKLRLR 243 Query: 254 ARWCVEE-VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRI 311 AR VEE + I++TE+PY V KSRLIE+IAELI K + + D+RDES +D +R+ Sbjct: 244 ARMHVEENSDKQRENIILTEMPYNVNKSRLIEQIAELINEKTLTGISDVRDESDKDGIRV 303 Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371 VL K + ++++ ++ +D++ F NM L +P+ M + ++ W+ HR +V Sbjct: 304 VLELK-KGESSEVVINRLYKFTDVQVTFGANMLALDKN-LPRTMNIHRMISAWIRHRMDV 361 Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQV 428 + RR+ + + + R IL+G L A +DE++ IR N++ K +V FS +E Q Sbjct: 362 IQRRTRYELNKAEARAHILEGFLKALSCMDEVVKTIRESSNKEHAKQQLVELFSFSEAQA 421 Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488 AIL LRL L LE +++ E LL + +L + + I E++E+ ++ Sbjct: 422 LAILELRLYQLTGLEADKVQKEYSELLEKITYYRKVLAEEELVKDIIREELQELHKVHKT 481 Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSVDL 540 R T E+ D ++ +I E + + IS +++ + K + Sbjct: 482 P------RRTRIEMDAGDVRDIED-IISDESVIITISGDDYVKRMPVKVFREQKRGGQGV 534 Query: 541 SALHFKEG-DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG 583 + K+G D LK A T D +L+ + G+ Y L L G Sbjct: 535 TGFDMKKGSDFLKAVYSASTKDYLLIFTNFGQCYWLKVWRLPEG 578 >gi|240145737|ref|ZP_04744338.1| DNA gyrase, A subunit [Roseburia intestinalis L1-82] gi|257202153|gb|EEV00438.1| DNA gyrase, A subunit [Roseburia intestinalis L1-82] gi|291536985|emb|CBL10097.1| DNA gyrase subunit A [Roseburia intestinalis M50/1] gi|291539811|emb|CBL12922.1| DNA gyrase subunit A [Roseburia intestinalis XB6B4] Length = 874 Score = 391 bits (1004), Expect = e-106, Method: Compositional matrix adjust. Identities = 201/473 (42%), Positives = 307/473 (64%), Gaps = 10/473 (2%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 + + V L+ +E Y+ YA+S I +RA+PD+RDG KPV RR++++M E+ +K Sbjct: 7 DQIHDVDLKKTMETSYIDYAMSVIAQRALPDVRDGLKPVQRRVLYSMIELNNGPDKPHRK 66 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 ARIVG+ +GK HPHGD S+Y +LV +AQ + RYPL+ G GNFG++DGD AAA RYTEA Sbjct: 67 CARIVGDTMGKYHPHGDSSIYGALVNMAQEWSTRYPLVDGHGNFGSVDGDGAAAMRYTEA 126 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 R+++++ +L + +D VDF ++E + EP V PS++PNLL NGT+GIAVGMAT+IP H Sbjct: 127 RLSKISMEMLADIGKDTVDFVPNFDETEKEPTVLPSRYPNLLVNGTTGIAVGMATNIPPH 186 Query: 195 NVQEICEAALALIDNP-----EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249 N++E+ A + +IDN + IE+LL + GPDFPTGG+I+ + I E+YR GRG Sbjct: 187 NLREVINAVVKIIDNKVEEDRDTDIEELLSIVKGPDFPTGGMILGT-AGINEAYRTGRGK 245 Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309 RVRA +E + G IVVTE+PY V K+RLIEKIAEL+ K++ + D+RDES Sbjct: 246 VRVRAITDIEPMQNGKNRIVVTELPYMVNKARLIEKIAELVRDKKVDGITDLRDESDRQG 305 Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369 + R ++P++++ ++ + ++ F + M L + P+V+ L +LK +L H+ Sbjct: 306 MRICIELRRDVNPNVVLNLLYKHTQLQDTFGVIMLAL-VNNEPKVLNLYDMLKYYLIHQE 364 Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTEN 426 EV+ RR+ + + + R IL+GLLIA NIDE+I+IIR N + K ++ RFSL++ Sbjct: 365 EVVTRRTKYELNKAEERAHILEGLLIALDNIDEVISIIRSSQNTQEAKSRLMERFSLSDA 424 Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479 Q AI+++RLR+L LE ++++E L+ ++ ++L K+ I EI Sbjct: 425 QSQAIVDMRLRALTGLEREKLEAEYAELMDRIAELRAILADKKKLLGVIRTEI 477 >gi|319792463|ref|YP_004154103.1| DNA gyrase, a subunit [Variovorax paradoxus EPS] gi|315594926|gb|ADU35992.1| DNA gyrase, A subunit [Variovorax paradoxus EPS] Length = 881 Score = 391 bits (1004), Expect = e-106, Method: Compositional matrix adjust. Identities = 235/619 (37%), Positives = 351/619 (56%), Gaps = 65/619 (10%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 +SL + YL YA+S I RA+PD RDG KPVHRR++ AM E+ D+ +KKSARIV Sbjct: 11 ISLEEEMRSSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHELNNDWNRPYKKSARIV 70 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGDQSVYD++VRLAQ F R+ L+ GQGNFG++DGD+AAA RYTE R+ ++ Sbjct: 71 GDVIGKYHPHGDQSVYDTIVRLAQDFSMRHMLVDGQGNFGSVDGDNAAAMRYTEIRLAKI 130 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A +L +D++ VDF+D Y+ + EP V PS+ PNLL NG+ GIAVGMAT+IP HN+ E+ Sbjct: 131 AHEMLADIDKETVDFQDNYDGSEKEPKVLPSQLPNLLVNGSGGIAVGMATNIPPHNLNEV 190 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 +A L L+ NP+ +I++L+E + PDFPT GII + + YR GRG +RA+ E Sbjct: 191 VDACLHLLRNPQATIDELMEIVPAPDFPTAGIIY-GINGVKDGYRTGRGKVVMRAKCHFE 249 Query: 260 EVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318 ++ RG I+V E+PYQV K L E++AEL+ K+I + I+DES + ++ R Sbjct: 250 DIDRGQRQAIIVDELPYQVNKKTLQERMAELVHEKKIEGISHIQDESDKSGMRLVIELKR 309 Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378 P++++ +++ + ++ F +NM L G+ P++ L +++ +L HRREV+ RR+ F Sbjct: 310 GEVPEVVLNNLYKQTQLQDTFGINMVALVNGQ-PKLCNLKDLIEVFLQHRREVVTRRTVF 368 Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIR------------------------------ 408 ++ R +L+GL +A NIDE I IIR Sbjct: 369 TLRKARERGHVLEGLAVALANIDEFIRIIRESPTPPVAKAELMTRSWDSKLVREMLTRSR 428 Query: 409 ------NEDKPKPVMVSR---------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453 N D +P + R + L+E Q IL +RL+ L LE+ +I +E + Sbjct: 429 ADGGVINADDYRPEGLEREFGMGSDGLYRLSETQAQEILQMRLQRLTGLEQDKIVAEYKD 488 Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513 ++AE + + +L ++ I E+ +K+ F +S LG RR + E S D +T + Sbjct: 489 VMAEIDDLLDILAKPERVSVIIGDELGTIKQEFGQSK-LGARR-SLVEHSAFDLST--ED 544 Query: 514 MIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565 +I + V +S+ G+I R+ K A KE D + A+T D IL Sbjct: 545 LITPTDMVVTLSHSGYIKSQPLGEYRAQKRGGRGKQATATKEDDWIDQLFIANTHDYILC 604 Query: 566 LSTDGKAYTL-----PAGN 579 S G+ Y L PAG+ Sbjct: 605 FSNRGRLYWLKVWEVPAGS 623 >gi|257455190|ref|ZP_05620425.1| DNA gyrase, A subunit [Enhydrobacter aerosaccus SK60] gi|257447152|gb|EEV22160.1| DNA gyrase, A subunit [Enhydrobacter aerosaccus SK60] Length = 937 Score = 391 bits (1004), Expect = e-106, Method: Compositional matrix adjust. Identities = 225/620 (36%), Positives = 353/620 (56%), Gaps = 71/620 (11%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 ++V + + L++ YL YA+S I RA+PD+RDG KPVHRR+++AM E+ DF +KK Sbjct: 4 DSVSPIGIVDELKQSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMHELSNDFNKPYKK 63 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 SAR+VG+VIGK HPHGD +VYD++VRLAQPF RY LI GQGNFG++D D AAA RYTE Sbjct: 64 SARVVGDVIGKYHPHGDTAVYDAIVRLAQPFSMRYMLIDGQGNFGSVDDDPAAAMRYTEV 123 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 RM ++ +L +D+D VD+ Y+ + P V P++ PNLL NG +GIAVGMAT++ H Sbjct: 124 RMQKLTHQMLGDLDKDTVDWEPNYDGSEQMPSVMPARIPNLLVNGATGIAVGMATNMAPH 183 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 N+ E+ A LA D+P IS E L+++I GPDFPTGGII R IV++YR G+G +R Sbjct: 184 NLTEVINACLAYADDPHISGEMLMQHITGPDFPTGGIIY-GRSGIVDAYRTGKGRLHLRG 242 Query: 255 RWCVE---EVG--RGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309 ++ +E E G + IV TEIPYQ K++LIEKIAEL+ K++ + +IRDES +D Sbjct: 243 KYHIEPMSETGANKERERIVFTEIPYQTNKAKLIEKIAELVRDKKLEGISEIRDESDKDG 302 Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369 + R + ++++ ++F+ + +E+ F +NM L G+ P++M L ++ ++ HR+ Sbjct: 303 MRIAIDLRRGENAEVIVNNLFIQTPLESSFSINMVALDEGQ-PKIMTLRDLIAAFVRHRQ 361 Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEII------------------------- 404 EV+ RR+ F ++ R +L+GL IA NID II Sbjct: 362 EVVTRRTIFELKKAQARGHLLEGLTIALANIDGIIDTIKASANRQEARDNLLTHTWQSGG 421 Query: 405 ---------------AIIRNEDKPKPVMV----SRFSLTENQVDAILNLRLRSLRKLEEY 445 +I ED P + + L+ +QV+AIL+++L L LE+ Sbjct: 422 VIAMLEAAGSHSIRPDVIEGEDLKAPYGLIDDNQHYRLSPDQVNAILDMQLHRLTGLEQD 481 Query: 446 QIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF--SKSTDLGRRRTTFCEVS 503 +++ E +LA ++ S+L++ Q I E+ +++E F ++ T + R+ F S Sbjct: 482 KLQQEFKEILALIAQLQSILDNFDQLMQVIKDELIQIREDFGDARKTQIVDSRSDF---S 538 Query: 504 RADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIAL 555 RAD +I ++ + + +S G+ ++ K SA K D + + Sbjct: 539 RAD-------LISEQTVVLTVSRTGYAKTQPISDYIAQKRGGKGKSATAMKADDVIDHMV 591 Query: 556 HAHTTDRILLLSTDGKAYTL 575 T + +++ + G+ + L Sbjct: 592 VTSTHNNVMIFTDRGRVFGL 611 >gi|325265437|ref|ZP_08132160.1| DNA gyrase, A subunit [Clostridium sp. D5] gi|324029295|gb|EGB90587.1| DNA gyrase, A subunit [Clostridium sp. D5] Length = 833 Score = 391 bits (1004), Expect = e-106, Method: Compositional matrix adjust. Identities = 242/680 (35%), Positives = 388/680 (57%), Gaps = 46/680 (6%) Query: 13 VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72 V + V V L+ +E Y+ YA+S I RA+PD+RDG KPV RRI+++M E+ Sbjct: 5 VFDKVHEVDLKKTMENSYIDYAMSVIAARALPDVRDGLKPVQRRILYSMIELNNGPDKPH 64 Query: 73 KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132 +K ARIVG+ +GK HPHGD S+Y +LV LAQ + RYPL+ G GNFG++DGD AAA RYT Sbjct: 65 RKCARIVGDTMGKYHPHGDSSIYGALVNLAQEWSTRYPLVDGHGNFGSVDGDGAAAMRYT 124 Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192 EAR+++++ + +++D VDF ++E + EP V P++FPNLL NGTSGIAVGMAT+IP Sbjct: 125 EARLSKISMEMTADINKDTVDFIPNFDETEKEPTVLPARFPNLLVNGTSGIAVGMATNIP 184 Query: 193 SHNVQEICEAALALID-----NPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247 HN++E+ A + +ID N + IE +L+ I GPDFPTG I+ +R I E+YR GR Sbjct: 185 PHNLREVISAVVKIIDDQIEENGDTVIEDILKIIKGPDFPTGAEILGTR-GIEEAYRTGR 243 Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307 G RVRA +E + G I+VTE+PY V K+RLIEKIAEL+ K++ + D+ D+S Sbjct: 244 GKIRVRAITNIEPMANGKNRIIVTELPYMVNKARLIEKIAELVRDKKVDGITDLSDQSNR 303 Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367 + + R ++P++++ ++ + ++ F + M L + P+VM + +L+ +L H Sbjct: 304 EGMRICIELRRDVNPNVILNQLYKHTQLQDTFGVIMLAL-VNNEPKVMNILDMLRLYLKH 362 Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLT 424 + EV+ RR+ + + + R ILKGLLIA +IDE+I IIR N K +++RF LT Sbjct: 363 QEEVVTRRTKYELNKAEERAHILKGLLIALDHIDEVIKIIRASKNVQIAKEELIARFDLT 422 Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484 + Q AI+++RLR+L LE +++SE + L+ + ++ ++L K + I EI + + Sbjct: 423 DVQAQAIVDMRLRALTGLEREKLESEYEELMKKIGELKAILADRKLLLSVIREEILIIND 482 Query: 485 IFSKSTDLGRRRTTF----CEVSRADKATLQQAMIEKEPITVVISNRGWIR-----SLKS 535 + RRT+ ++S D +I +E + + ++ G+I+ + KS Sbjct: 483 KYGDE-----RRTSIGFDEFDISMED-------LIPRENVVITMTKLGYIKRMTVDTFKS 530 Query: 536 HS---VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAI 590 + + + + D +K T I+ + G+ Y + + S G AI Sbjct: 531 QNRGGKGIKGMQTLDEDYIKELFITSTHHYIMFFTNTGRVYRIKGYEIPEASRTARGTAI 590 Query: 591 QLLIDLNHNQDIVTAFV----YDSTCKLLVVSSKGNAFIVEESEII--ANTRKGKTFLKV 644 ++ L ++ I TA + Y+ L + + KG +V+++ I AN RK Sbjct: 591 INILQLMPDEKI-TAMIPIKEYEDGKFLFMATEKG---LVKKTPITDYANVRKTGLAAIT 646 Query: 645 SSEEKMKLVVKVTGDHVAVV 664 E+ + VK+T + +V Sbjct: 647 LREDDRLIEVKITDNEEDIV 666 >gi|162451997|ref|YP_001614364.1| DNA gyrase subunit A [Sorangium cellulosum 'So ce 56'] gi|161162579|emb|CAN93884.1| DNA gyrase subunit A [Sorangium cellulosum 'So ce 56'] Length = 873 Score = 391 bits (1004), Expect = e-106, Method: Compositional matrix adjust. Identities = 228/594 (38%), Positives = 345/594 (58%), Gaps = 51/594 (8%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 VS++ L YL YA+S I RAIPD+RDG KPVHRRI+++M+E + A KK AR+V Sbjct: 13 VSIQDELRTSYLDYAMSVIIGRAIPDVRDGLKPVHRRILYSMNEQKIGPTGAHKKCARVV 72 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+V+GK HPHGD +VYD+LVR+ Q F RYPLI GQGN+G++DGDS AA RYTE+R++++ Sbjct: 73 GDVLGKYHPHGDLAVYDALVRMGQTFSLRYPLIDGQGNYGSVDGDSPAAMRYTESRLSRM 132 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A +L +D+D VDF Y++ + EP V P+KFP LL NG+ GIAVGMAT+IP HN+ EI Sbjct: 133 AVELLADLDKDTVDFVPNYDDSELEPSVLPAKFPQLLVNGSGGIAVGMATNIPPHNLGEI 192 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 +A +A+I NP++++E+LL + GPDFPTGG+I + IV++Y GRG +R R VE Sbjct: 193 IDATIAIIRNPDVTLEELLHLVPGPDFPTGGLIY-GKSGIVQAYTTGRGSITMRGRSQVE 251 Query: 260 EVGRGSW-CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFPKN 317 + +G +V TEIPYQV K+RL+ KIAE + KRI + ++RDES E +RIV+ K Sbjct: 252 KTMKGDREQLVFTEIPYQVNKARLVAKIAECMKEKRIEGISEVRDESDREGMRIVVELK- 310 Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377 + + P +++ ++ L+D++ F + ++ GR P V+ L L ++ HRREV+ RR Sbjct: 311 KDIFPQVVLNQLYRLTDLQATFGVINLSIANGR-PAVLSLKDTLSHFIEHRREVVTRRCR 369 Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED-------------------------K 412 F ++ + + E+++GL +A +ID I+A IR + Sbjct: 370 FELRQAESQRELVEGLGMATSDIDRIVATIRASSDPDDARENLQKLPLRGLGEFLRRAGR 429 Query: 413 PKPVMV-----SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467 P+P + L+E Q AIL +RL L LE ++ E L E++ ++L Sbjct: 430 PEPECAEADTRGDYFLSERQAKAILEMRLSRLTGLEREKLAKEYGELSQTIERLRAILAD 489 Query: 468 GKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNR 527 N I E+ E+K F +RRT E+ A+ + +I++E + V IS+ Sbjct: 490 MGLLMNVIVMELEEIKARFGD-----KRRT---EIVPAEAEIQMEDLIQEEDMVVTISHA 541 Query: 528 GWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573 G++ R+ + + + +E D + A T + S GK + Sbjct: 542 GYLKRTPTSTYRAQRRGGKGMVGMEAREEDWVSQLFVASTHSYVFFFSDKGKVF 595 >gi|296447102|ref|ZP_06889034.1| DNA gyrase, A subunit [Methylosinus trichosporium OB3b] gi|296255371|gb|EFH02466.1| DNA gyrase, A subunit [Methylosinus trichosporium OB3b] Length = 911 Score = 391 bits (1004), Expect = e-106, Method: Compositional matrix adjust. Identities = 234/631 (37%), Positives = 355/631 (56%), Gaps = 55/631 (8%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 +++ VS+ ++ YL YA+S I RA+PD+RDG KPVHRRI+ +M E G + KS Sbjct: 17 DIRPVSIADEMKRSYLDYAMSVIVSRALPDVRDGLKPVHRRIMFSMHENGHTPDKPYVKS 76 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 ARIVG+V+GK HPHGD ++YD+LVR+AQPF R PLI GQGNFG++D D AA RYTE+R Sbjct: 77 ARIVGDVMGKYHPHGDAAIYDALVRMAQPFSMRLPLIDGQGNFGSVDNDPPAAMRYTESR 136 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 + + A +L+ +DE VDF+ Y++++ EP V P++FPNLL NG GIAVGMAT+IP HN Sbjct: 137 LAKPALALLEDLDEGTVDFKPNYDDKEMEPTVLPARFPNLLVNGAGGIAVGMATNIPPHN 196 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 + E+ +AA+ALID P++S+ +L+E + GPDFPT I+ R I +Y GRG +RA+ Sbjct: 197 LGEVIDAAIALIDRPDMSVAELMEIVPGPDFPTAATIL-GRGGIRNAYSTGRGSIIMRAK 255 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315 +E + + I+ TEIPYQV K+ LIE+IAEL+ K+I + D+RDES D ++ Sbjct: 256 AEIETLRKEREAIIFTEIPYQVNKAALIERIAELVREKKIEGVADLRDESDRDGMRIVVE 315 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 R D+++ ++ + +++ FP+NM L+ GR P+++ L +L ++ R V+ RR Sbjct: 316 LKRDAVADVVLNQLWRHTALQSSFPVNMIALNGGR-PELLTLKDVLVAFVDFRESVVTRR 374 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK----------------------- 412 + FR+ + GL IA NIDE+I +IR Sbjct: 375 TKFRLNKARDAAHLQVGLAIAVANIDEVIRLIRTSADAAAAREALMERLWPAKDMAPLVA 434 Query: 413 ----PKPVMV--SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466 P+ V+ L+E Q AIL+LRL+ L L +I L+ L AE + +L Sbjct: 435 LIADPRHVLHEDGTIRLSEAQARAILDLRLQRLTALGREEIAEALNKLAAEIAEYLEILR 494 Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526 S ++ + + E+ VK ++ RRT ++ D + +I +E + V +S+ Sbjct: 495 SREKLFGIVKDEMIAVKTAYATP-----RRT---QIVDGDGDVEDEDLIAREDMVVTVSH 546 Query: 527 RGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---- 574 G+I R+ + S + KE D + A T +L S+ G+AY Sbjct: 547 AGYIKRVPLSTYRAQRRGGKGRSGMQTKEEDFVHRLFVASTHTPVLFFSSLGRAYKEKVW 606 Query: 575 -LPAGNLLSGRGHGEAIQLLIDLNHNQDIVT 604 LP L + + G+A+ L+ L N+ I T Sbjct: 607 RLP---LAAPQARGKALVNLLPLEQNERITT 634 >gi|332529392|ref|ZP_08405353.1| DNA gyrase subunit A [Hylemonella gracilis ATCC 19624] gi|332041190|gb|EGI77555.1| DNA gyrase subunit A [Hylemonella gracilis ATCC 19624] Length = 890 Score = 390 bits (1003), Expect = e-106, Method: Compositional matrix adjust. Identities = 234/610 (38%), Positives = 345/610 (56%), Gaps = 60/610 (9%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 +SL + YL YA+S I RA+PD RDGFKPVHRR++ AM E+ D+ +KKSARIV Sbjct: 11 ISLEEEMRRSYLDYAMSVIIGRALPDARDGFKPVHRRVLFAMHELNNDWNRPYKKSARIV 70 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGDQSVYD++VR+AQ F R+ L+ GQGNFG++DGD AAA RYTE R+ ++ Sbjct: 71 GDVIGKYHPHGDQSVYDTIVRMAQDFSMRHMLVDGQGNFGSVDGDPAAAMRYTEIRLAKI 130 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A L +D++ VDF Y+ + EP+V P++ PNLL NG+ GIAVGMAT+IP HN+ E+ Sbjct: 131 AHEALADIDKETVDFGPNYDGSEKEPLVLPTRVPNLLVNGSGGIAVGMATNIPPHNLNEV 190 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 +A L ++ NP SI++L+E I PDFPT GII + + + YR GRG +RAR E Sbjct: 191 VDACLHVLKNPGASIDELMEIIPAPDFPTAGIIY-GMQGVKDGYRTGRGRVVMRARCHFE 249 Query: 260 EVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318 ++ +G I+V E+PYQV K L+E+IAEL+ K+I + I+DES + V+ R Sbjct: 250 DIDKGQRQSIIVDELPYQVNKKSLLERIAELVHEKKIEGISHIQDESDKSGMRVVIELKR 309 Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378 P++++ +++ + ++ F +NM L G+ P++ L ++ +L HRREV+ RR+ F Sbjct: 310 GELPEVVLNNLYKQTQLQDTFGMNMVALVGGQ-PKLCNLKDLIVVFLDHRREVVTRRTVF 368 Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIR------------------------------ 408 ++ R +L+GL +A NIDE I IIR Sbjct: 369 ELRKARERGHVLEGLAVALANIDEFIRIIRESPTPPVAKAELMTRAWDSKLVREMLTRSR 428 Query: 409 ------NEDKPKPVMVSR---------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453 N D +P + R + L+E Q IL +RL+ L LE+ +I +E + Sbjct: 429 ADGGVINADDYRPEGLEREFGMQNDGLYRLSETQAQEILQMRLQRLTGLEQDKIVAEYKD 488 Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513 ++AE E + +L ++ + E+ +K+ F + T LG RR+ E + D AT + Sbjct: 489 VMAEIENLLDILARPERVAAIVGEELAGIKQEFGQ-TKLGARRSV-VEHNAQDLAT--ED 544 Query: 514 MIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565 +I E V +S+ G+I R+ K A KE D + A+T D IL Sbjct: 545 LIAPEDKVVTLSHAGYIKSQPLSEYRAQKRGGRGKQATQTKEDDWIDQLFIANTHDYILC 604 Query: 566 LSTDGKAYTL 575 S G+ Y L Sbjct: 605 FSNRGRLYWL 614 >gi|76788911|ref|YP_327997.1| DNA gyrase subunit A [Chlamydia trachomatis A/HAR-13] gi|237804535|ref|YP_002888689.1| DNA gyrase subunit A [Chlamydia trachomatis B/TZ1A828/OT] gi|76167441|gb|AAX50449.1| DNA gyrase subunit A [Chlamydia trachomatis A/HAR-13] gi|231272835|emb|CAX09744.1| DNA gyrase subunit A [Chlamydia trachomatis B/TZ1A828/OT] Length = 836 Score = 390 bits (1003), Expect = e-106, Method: Compositional matrix adjust. Identities = 230/584 (39%), Positives = 339/584 (58%), Gaps = 24/584 (4%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 EE + +L ++E YL Y++S I RA+PD RDG KP RRI++AM ++ L G + Sbjct: 5 EEIIVPKNLEEEMKESYLRYSMSVIISRALPDARDGLKPSQRRILYAMKQLNLTPGVKHR 64 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 K A+I G+ G HPHG+ +Y +LVR+AQ + RYPL+ GQGNFG+IDGD AAA RYTE Sbjct: 65 KCAKICGDTSGDYHPHGESVIYPTLVRMAQDWAMRYPLVDGQGNFGSIDGDPAAAMRYTE 124 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 AR+T A +L+ +D+D VD Y+E EPVVFPSKFPNLL NG+SGIAVGMAT+IP Sbjct: 125 ARLTHSAIFLLEDLDKDTVDMVPNYDETKYEPVVFPSKFPNLLCNGSSGIAVGMATNIPP 184 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E+ EA L ++ N + SIE +LE + GPDFPTGGII + E I +Y GRG R+R Sbjct: 185 HNLGELIEATLLVLANSQTSIEDILEVMPGPDFPTGGIICGT-EGIRSTYYTGRGKLRLR 243 Query: 254 ARWCVEE-VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRI 311 AR VEE + I++TE+PY V KSRLIE+IAELI K + + D+RDES +D +R+ Sbjct: 244 ARMHVEENSDKQRENIILTEMPYNVNKSRLIEQIAELINEKTLTGISDVRDESDKDGIRV 303 Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371 VL K + ++++ ++ +D++ F NM L +P+ M + ++ W+ HR +V Sbjct: 304 VLELK-KGESSEVVINRLYKFTDVQVTFGANMLALDKN-LPRTMNIHRMISAWIRHRMDV 361 Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQV 428 + RR+ + + + R IL+G L A +DE++ IR N++ K +V FS +E Q Sbjct: 362 IQRRTRYELNKAEARAHILEGFLKALSCMDEVVKTIRESSNKEHAKQQLVELFSFSEAQA 421 Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488 AIL LRL L LE +++ E LL + +L + + I E++E+ ++ Sbjct: 422 LAILELRLYQLTGLEADKVQKEYSELLEKITYYRKVLAEEELVKDIIREELQELHKVHKT 481 Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSVDL 540 R T E+ D ++ +I E + + IS +++ + K + Sbjct: 482 P------RRTRIEMDAGDVRDIED-IISDESVIITISGDDYVKRMPVKVFREQKRGGQGV 534 Query: 541 SALHFKEG-DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG 583 + K+G D LK A T D +L+ + G+ Y L L G Sbjct: 535 TGFDMKKGSDFLKAVYSASTKDYLLIFTNFGQCYWLKVWRLPEG 578 >gi|194288904|ref|YP_002004811.1| DNA gyrase subunit a [Cupriavidus taiwanensis LMG 19424] gi|193222739|emb|CAQ68742.1| DNA gyrase, subunit A, type II topoisomerase [Cupriavidus taiwanensis LMG 19424] Length = 892 Score = 390 bits (1003), Expect = e-106, Method: Compositional matrix adjust. Identities = 256/741 (34%), Positives = 400/741 (53%), Gaps = 80/741 (10%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 VSL + YL YA+S I RA+PD+RDG KPVHRR+++AM E+ D+ A+KKSARIV Sbjct: 11 VSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNRAYKKSARIV 70 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGD +VYD++VR+AQ F RY L+ GQGNFG++DGD+AAA RYTE R++++ Sbjct: 71 GDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRLSKI 130 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A +L +D++ VDF Y+ + EP + P++ PNLL NG+SGIAVGMAT+IP HN+ EI Sbjct: 131 AHEMLHDIDKETVDFDSNYDGSEKEPSILPARIPNLLINGSSGIAVGMATNIPPHNLNEI 190 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 + L L+ NP+ ++++L+E I PDFPT GII + + E YR GRG +RA+ E Sbjct: 191 VDGCLHLLRNPQATVDELIELIPAPDFPTAGIIY-GIQGVREGYRTGRGRVVMRAKTHFE 249 Query: 260 EVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318 ++ RG I+V E+PYQV K L+E+IAEL+ K+I + DIRDES + V+ R Sbjct: 250 DIDRGQRQAIIVDELPYQVNKRTLLERIAELVTEKKIEGISDIRDESDKSGMRVVIELKR 309 Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378 + P++++ +++ + ++ F +NM L + R P+++ L +L+ +LAHRREV+ RR+ F Sbjct: 310 NEVPEVVLNNLYKNTQLQDTFGMNMVAL-VDRQPRLLNLRQMLEYFLAHRREVVTRRTVF 368 Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV-----------------MVSR- 420 ++ R +L+GL +A NIDE IAII+ P P+ M++R Sbjct: 369 ELRKARERGHVLEGLAVALANIDEFIAIIKAAPTP-PIAKQELMSKAWDSALVREMLARA 427 Query: 421 ---------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453 + L++ Q IL +RL+ L LE+ +I E + Sbjct: 428 EGETPGGRASYRPDGLPAVFGMQPDGLYRLSDGQAQEILQMRLQRLTGLEQDKIVQEYRD 487 Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513 ++AE + +L ++ I E+ ++ F G R + E++ + T + Sbjct: 488 IMAEIADLLDILARPERITTIIIDELTAIRAEF------GDERRSQIELNATELDT--ED 539 Query: 514 MIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565 +I + + V +S+ G++ R+ K A KE D + A+T D IL Sbjct: 540 LITPQDMVVTLSHSGYMKSQPISEYRAQKRGGRGKQAAATKEDDWIDTLFVANTHDYILC 599 Query: 566 LSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD---IVTAFVYDSTCKLLVV 617 S G K Y +P G S G I + L+ + I+ +D+ + + Sbjct: 600 FSNRGRLYWLKVYEVPQG---SRNSRGRPIVNMFPLSEGEKINVILPVRQFDAEHFIFMA 656 Query: 618 SSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT-GDH-VAVVGENRKLLIFSI 675 +++G +E +N RK E + VT G H V + + K + F Sbjct: 657 TARGTVKKTALTE-FSNPRKAGIIAVDLDEGDYLIGAAVTDGQHDVMLFSDAGKAVRFDE 715 Query: 676 DQIPEMSR-GKGVRLQSYKDG 695 + + M R +GVR + ++G Sbjct: 716 NDVRPMGRQARGVRGMNLEEG 736 >gi|153007330|ref|YP_001381655.1| DNA gyrase subunit A [Anaeromyxobacter sp. Fw109-5] gi|152030903|gb|ABS28671.1| DNA gyrase, A subunit [Anaeromyxobacter sp. Fw109-5] Length = 891 Score = 390 bits (1003), Expect = e-106, Method: Compositional matrix adjust. Identities = 232/591 (39%), Positives = 362/591 (61%), Gaps = 28/591 (4%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 V++ + + YL Y++S I RA+PD+RDG KPVHRR+++AM GL + K A +V Sbjct: 28 VAIEDEMRKSYLDYSMSVIIGRALPDVRDGLKPVHRRVLYAMHTEGLHHNKRYSKCAGVV 87 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 GEV+ K HPHGD SVYD+LVRLAQ + RYPLI GQGNFG++DGD AAAYRYTE+R+ ++ Sbjct: 88 GEVLKKYHPHGDASVYDALVRLAQDWNLRYPLIDGQGNFGSVDGDPAAAYRYTESRLERL 147 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A+ +L +D++ VD+ +++ EP+V P++FPNLL NG++GIAVGMAT+IP HN+ E+ Sbjct: 148 ADFLLADIDKETVDWGPNFDDSTVEPLVLPTRFPNLLVNGSAGIAVGMATNIPPHNMGEV 207 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 +A LI+NP+++I +L+ +I GPDFPT GII + R+ I +Y GRG +VRAR +E Sbjct: 208 LDAVEHLIENPKVTIPELMRFIPGPDFPTAGII-QGRDGIRAAYEKGRGTIQVRARASIE 266 Query: 260 EVGRGSW-CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318 + IVVTEIPYQV K++L+E IA+L+ KR+ + D+RDES+ + V+ R Sbjct: 267 VHPKTERESIVVTEIPYQVNKAKLVEHIADLVREKRLEGISDLRDESSREGMRVVIELKR 326 Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378 +++ +++ + M+T F + + + G+ P+++ L +L+ ++AHRR+V+ RR+ F Sbjct: 327 DAVAQVVLNNLYAHTQMQTGFGVTLLAIDGGQ-PRILNLKELLERFVAHRRDVVTRRTRF 385 Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAILNLR 435 ++ R IL GL IA ++DEII +IR + D + +++RF+L+E Q AIL ++ Sbjct: 386 ELRKAREREHILLGLQIALDHLDEIIELIRKAPDRDAARDGLITRFALSELQAKAILEMQ 445 Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495 L+ L LE +I EL + ++ +L S K IA E+REVK++F+ RR Sbjct: 446 LQRLTGLERQKILDELAEVQKIILRLKEILASEKVLMEVIAGELREVKQLFADE----RR 501 Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKE 547 E + D +T + +I +E + V +S+ G++ R+ + + ++ Sbjct: 502 TEILGEAT--DYST--EDLIAEEEMVVTVSHAGYVKRNPVSLYRAQRRGGRGKTGAATRD 557 Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTL------PAGNLLSGRGHGEAIQL 592 D L+ A T +L+ S GK Y L PAG G+ +QL Sbjct: 558 EDFLESIFVASTHSYLLVFSDKGKVYWLKVHEIPPAGRAARGKPIVNLVQL 608 >gi|325913623|ref|ZP_08175985.1| DNA gyrase, A subunit [Lactobacillus iners UPII 60-B] gi|325476982|gb|EGC80132.1| DNA gyrase, A subunit [Lactobacillus iners UPII 60-B] Length = 815 Score = 390 bits (1003), Expect = e-106, Method: Compositional matrix adjust. Identities = 233/704 (33%), Positives = 395/704 (56%), Gaps = 49/704 (6%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 + ++ V L + +L YA+S I RA+PD+RDG KPV RRI++ M+E+G+ +K Sbjct: 7 DHRIRNVDLTKTMRSSFLDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVFPDKPYK 66 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSARIVGEV+GK HPHGD S+Y+++ +AQ F RY L+ G GNFG+IDGD AA RYTE Sbjct: 67 KSARIVGEVMGKFHPHGDSSIYEAMAHMAQDFSYRYMLVDGHGNFGSIDGDRPAAMRYTE 126 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 ARM+++A +L+ +++D +D++ Y++ ++EPVV P++ P LL NG SGIAVGM T+IP Sbjct: 127 ARMSKIAMEMLRDINKDTIDWQRNYDDNENEPVVLPARVPALLVNGVSGIAVGMTTNIPP 186 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ EI L++NP++S+++L+ I GPDFPTGGII+ R I+ +Y+ G+G VR Sbjct: 187 HNLSEIISGLHMLMENPDVSVKELMTAITGPDFPTGGIIM-GRSGILRAYKTGKGNIVVR 245 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313 A+ ++ G I+++EIPY V K+ L++KIA+L K + + I+DES + + Sbjct: 246 AKTSIDTEKSGRERIIISEIPYMVNKAELVKKIADLARDKVVDGITGIQDESDQKGLRIT 305 Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373 R +++ ++F + +++ F +NM + G P V+ L IL+ +LAH+ ++ Sbjct: 306 IDIRRDASASVVLNNLFKQTQLQSNFGVNMVAIVDGS-PHVLNLKQILQYYLAHQENIIT 364 Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDA 430 RR+ + ++ + R I++GL IA +IDEII IIR N D K +++RF L + Q A Sbjct: 365 RRTKYDLKKAEARAHIIEGLRIALDHIDEIIKIIRGSKNSDIAKDQLITRFGLDDRQAQA 424 Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490 IL++RL L LE +++ E +LL + + +L ++ I E+ ++++ F Sbjct: 425 ILDMRLVRLTGLERDKLEEEYRDLLEKIDDYKDILAKPERVDQIIFNELLDIQKRFGDE- 483 Query: 491 DLGRRRTTFCEVSRADKATL-QQAMIEKEPITVVISNRGWIRSLKSHSVDLS-------- 541 RRT E+S ++ ++ + +IEK+ + + +++ G+I+ + + + Sbjct: 484 ----RRT---EISDSEIISIDDEDLIEKQNVLLTLTHNGYIKRMPADEFKVQNRGGRGIR 536 Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLLSGRGH 586 + + D + ++ +T D +L + GK Y+ LP NL+ Sbjct: 537 GMGVQNDDFINHLIYVNTHDYLLFFTNKGKVYSKKSYEIPEYGRAAKGLPIINLVQLE-K 595 Query: 587 GEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS 646 GE +Q ++ + N D+ L+ V+ G + SE R G L + Sbjct: 596 GEKVQAVVKIATN---------DTNKYLMFVTKYGIVKRISISEFTNIRRSGLIALNLRE 646 Query: 647 EEKMKLVVKVTGDHVAVVGENRKL-LIFSIDQIPEMSR-GKGVR 688 +++ V+ G ++G +IF+ +++ M R GVR Sbjct: 647 NDELSNVLLTDGSQNILIGTRLGYAVIFNENEVRTMGRVASGVR 690 >gi|300811997|ref|ZP_07092453.1| DNA gyrase, A subunit [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300497023|gb|EFK32089.1| DNA gyrase, A subunit [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] Length = 823 Score = 390 bits (1003), Expect = e-106, Method: Compositional matrix adjust. Identities = 218/628 (34%), Positives = 369/628 (58%), Gaps = 38/628 (6%) Query: 6 ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65 + N N + ++ V L + +L YA+S I RA+PD+RDG KPV RRI++ M+E+ Sbjct: 1 MDNENQGQDRRIRNVDLTQTMRSSFLDYAMSVIVARALPDVRDGLKPVQRRILYGMNELA 60 Query: 66 LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125 + +KKSARIVG+V+GK HPHGD S+Y ++ +AQ F RY L+ G GNFG++DGD Sbjct: 61 VTPDKPYKKSARIVGDVMGKYHPHGDSSIYLAMAHMAQDFAYRYMLVDGHGNFGSVDGDR 120 Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185 AA RYTEARM+++A +L+ ++++ VD++ Y++ ++EP V P++ PNLL NG+SGIAV Sbjct: 121 PAAMRYTEARMSKIAVEMLRDINKNTVDWQRNYDDTENEPTVLPARIPNLLVNGSSGIAV 180 Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245 GM T+IP HN+ E+ L+ NP+++ ++L++ I GPDFPTGGI++ R ++ +Y Sbjct: 181 GMTTNIPPHNLSEVISGIHMLMKNPDVTTKELMKAIPGPDFPTGGILM-GRGGVLHAYES 239 Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305 G+G VRA+ +E G I+V+EIPY V K+ L++KIAEL K I + +RDES Sbjct: 240 GKGNIVVRAKTEIETEKSGRERIIVSEIPYLVNKAELVQKIAELARDKVIDGITGVRDES 299 Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365 + + R +++ ++F + M++ F +NM + G P+ + L +L+ +L Sbjct: 300 DQSGMRITIDVRRDASASVVLNNLFKETQMQSNFAMNMVAIVDG-APKFLTLKQMLQYYL 358 Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFS 422 AH+ +V+ RR+ F ++ + R IL+GL +A +IDEI+++IRN D K ++SRF Sbjct: 359 AHQEDVITRRTKFDLEKAEARAHILEGLRVALDHIDEIVSLIRNSESSDIAKAGLISRFD 418 Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482 L + Q AIL++RL L LE +++ E LL + +L ++ I E+ ++ Sbjct: 419 LDDRQAQAILDMRLVRLTGLERDKVEGEYQELLVKIADYKDILAKPERIDQIIYDELLDI 478 Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSL-----KSH 536 ++ F +RRT +++ ++ T++ + +IE++ + + +S++G+++ + K+ Sbjct: 479 QKRFGD-----KRRT---QITASEVVTIEDEDLIEEQDVLLTLSHQGYVKRMLIDDFKTQ 530 Query: 537 S---VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAG 578 + + + ++GD ++ L++ T D + + GK Y LP Sbjct: 531 NRGGRGIKGMGVQKGDFIEHLLYSSTHDYLFFYTNKGKVYMKKAYEIPEYGRSAKGLPIV 590 Query: 579 NLLSGRGHGEAIQLLIDLNHNQDIVTAF 606 NLL GE IQ +++L D AF Sbjct: 591 NLLQ-LDKGEHIQTVVNLPQGHDDDYAF 617 >gi|91205609|ref|YP_537964.1| DNA gyrase subunit A [Rickettsia bellii RML369-C] gi|123084566|sp|Q1RID9|GYRA_RICBR RecName: Full=DNA gyrase subunit A gi|91069153|gb|ABE04875.1| DNA gyrase subunit A [Rickettsia bellii RML369-C] Length = 905 Score = 390 bits (1003), Expect = e-106, Method: Compositional matrix adjust. Identities = 254/719 (35%), Positives = 397/719 (55%), Gaps = 77/719 (10%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 N+ V++ ++ YL YA+S I RAIPD+RDG KPVHRRII++M E G A++KS Sbjct: 8 NLVPVNIEDEMKVSYLDYAMSVIVSRAIPDVRDGLKPVHRRIIYSMHEAGNHANRAYRKS 67 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 ARIVG+V+GK HPHGD ++YDSLVR+AQ F R PL+ GQGNFG++DGD+AAA RYTE+R Sbjct: 68 ARIVGDVMGKYHPHGDSAIYDSLVRMAQDFSLRLPLVDGQGNFGSLDGDAAAAMRYTESR 127 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 M +VA +++ +D++ V F Y+ + EP V PS FPNLL NG+ GIAVGMAT+IP HN Sbjct: 128 MAKVAHKLIEDIDKETVSFNPNYDGSEEEPSVLPSMFPNLLVNGSGGIAVGMATNIPPHN 187 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 + E+ +A +DN +I I LLE + GPDFPT GII+ I +Y GRG +R R Sbjct: 188 LGEVIDACCLYVDNNDIEILDLLEVVKGPDFPTSGIIL-GVNGIKSAYLTGRGSIAIRGR 246 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314 +E +G G I++TEIPY V K+RL+EKIAE++ KRI + D+RDES ++ +RI + Sbjct: 247 AEIENLGNGRQAIIITEIPYMVNKARLVEKIAEMVKEKRIEGISDLRDESNKNGIRIYIE 306 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K + + ++++ I+ + ++T F + M L G +P+VM L ++ +++ R V+ Sbjct: 307 LK-KDIVAEVVLNQIYSCTQLQTSFGVIMLALKDG-LPKVMNLKEVIAAFVSFREVVITN 364 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----------- 420 R+ + + + IL GL IA NIDEII II+ P K +++R Sbjct: 365 RTIYLLNKARDKAHILLGLTIAVSNIDEIIRIIKAASDPNAAKQELMARSWDALNILPLV 424 Query: 421 --------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466 S TE Q AIL +RL+ L +E+ +++ +L NL E + ++L Sbjct: 425 KLVDDKAMLNEEGKCSFTEAQAKAILEMRLQRLTAMEKNKLEEDLKNLATEITEYLNILG 484 Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526 S ++ + E+ +VKE F+ R T E D+ + +I++E + V ++ Sbjct: 485 SRERLLEILKEELIKVKEEFATP------RLTSIEFGEFDQDI--EDLIQREEMVVTVTL 536 Query: 527 RGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL--- 575 G+I R+ K S L ++ D T +L S G+ Y+L Sbjct: 537 GGYIKRVPLSSYRAQKRGGKGRSGLSMRDEDITTQVFVGSTHTPMLFFSNIGQVYSLKLY 596 Query: 576 ------------PAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGN- 622 P N+L +G E I ++ L NQD +D+ ++ ++KGN Sbjct: 597 KLPLSNPQGKGRPMVNILPLKGD-EHITNIMPLPENQD-----EWDN-LNIMFATAKGNI 649 Query: 623 --AFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQI 678 + +++ +I +N GK +++ ++K+ V D H+ + ++ K L F ++ + Sbjct: 650 RRSDLLDFKKIQSN---GKIAIRLDEDDKLIDVKPCKEDEHILLATKSGKALRFPVESL 705 >gi|312872702|ref|ZP_07732767.1| DNA gyrase, A subunit [Lactobacillus iners LEAF 2062A-h1] gi|311091744|gb|EFQ50123.1| DNA gyrase, A subunit [Lactobacillus iners LEAF 2062A-h1] Length = 815 Score = 390 bits (1003), Expect = e-106, Method: Compositional matrix adjust. Identities = 233/704 (33%), Positives = 395/704 (56%), Gaps = 49/704 (6%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 + ++ V L + +L YA+S I RA+PD+RDG KPV RRI++ M+E+G+ +K Sbjct: 7 DHRIRNVDLTKTMRSSFLDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVFPDKPYK 66 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSARIVGEV+GK HPHGD S+Y+++ +AQ F RY L+ G GNFG+IDGD AA RYTE Sbjct: 67 KSARIVGEVMGKFHPHGDSSIYEAMAHMAQDFSYRYMLVDGHGNFGSIDGDRPAAMRYTE 126 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 ARM+++A +L+ +++D +D++ Y++ ++EPVV P++ P LL NG SGIAVGM T+IP Sbjct: 127 ARMSKIAMEMLRDINKDTIDWQRNYDDNENEPVVLPARVPALLVNGVSGIAVGMTTNIPP 186 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ EI L++NP++S+++L+ I GPDFPTGGII+ R I+ +Y+ G+G VR Sbjct: 187 HNLSEIISGLHMLMENPDVSVKELMTAITGPDFPTGGIIM-GRSGILRAYKTGKGNIVVR 245 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313 A+ ++ G I+++EIPY V K+ L++KIA+L K + + I+DES + + Sbjct: 246 AKTSIDTEKSGRERIIISEIPYMVNKAELVKKIADLARDKVVDGITGIQDESDQKGLRIT 305 Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373 R +++ ++F + +++ F +NM + G P V+ L IL+ +LAH+ ++ Sbjct: 306 IDIRRDASASVVLNNLFKQTQLQSNFGVNMVAIVDGS-PHVLNLKQILQYYLAHQENIIT 364 Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDA 430 RR+ + ++ + R I++GL IA +IDEII IIR N D K +++RF L + Q A Sbjct: 365 RRTKYDLKKAEARAHIIEGLRIALDHIDEIIKIIRGSKNSDIAKDQLITRFGLDDRQAQA 424 Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490 IL++RL L LE +++ E +LL + + +L ++ I E+ ++++ F Sbjct: 425 ILDMRLVRLTGLERDKLEEEYRDLLEKIDDYKDILAKPERVDQIIFNELLDIQKRFGDE- 483 Query: 491 DLGRRRTTFCEVSRADKATL-QQAMIEKEPITVVISNRGWIRSLKSHSVDLS-------- 541 RRT E+S ++ ++ + +IEK+ + + +++ G+I+ + + + Sbjct: 484 ----RRT---EISDSEIISIDDEDLIEKQNVLLTLTHNGYIKRMPADEFKVQNRGGRGIR 536 Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLLSGRGH 586 + + D + ++ +T D +L + GK Y+ LP NL+ Sbjct: 537 GMGVQNDDFINHLIYVNTHDYLLFFTNKGKVYSKKSYEIPEYGRAAKGLPIINLVQLE-K 595 Query: 587 GEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS 646 GE +Q ++ + N D+ L+ V+ G + SE R G L + Sbjct: 596 GEKVQAVVKIATN---------DTNKYLMFVTKYGIVKRISISEFTNIRRSGLIALNLRE 646 Query: 647 EEKMKLVVKVTGDHVAVVGENRKL-LIFSIDQIPEMSR-GKGVR 688 +++ V+ G ++G +IF+ +++ M R GVR Sbjct: 647 NDELSNVLLTDGSQNILIGTRLGYAVIFNENEVRTMGRVASGVR 690 >gi|309805915|ref|ZP_07699947.1| DNA gyrase, A subunit [Lactobacillus iners LactinV 03V1-b] gi|308167691|gb|EFO69838.1| DNA gyrase, A subunit [Lactobacillus iners LactinV 03V1-b] Length = 815 Score = 390 bits (1003), Expect = e-106, Method: Compositional matrix adjust. Identities = 233/704 (33%), Positives = 395/704 (56%), Gaps = 49/704 (6%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 + ++ V L + +L YA+S I RA+PD+RDG KPV RRI++ M+E+G+ +K Sbjct: 7 DHRIRNVDLTKTMRSSFLDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVFPDKPYK 66 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSARIVGEV+GK HPHGD S+Y+++ +AQ F RY L+ G GNFG+IDGD AA RYTE Sbjct: 67 KSARIVGEVMGKFHPHGDSSIYEAMAHMAQDFSYRYMLVDGHGNFGSIDGDRPAAMRYTE 126 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 ARM+++A +L+ +++D +D++ Y++ ++EPVV P++ P LL NG SGIAVGM T+IP Sbjct: 127 ARMSKIAMEMLRDINKDTIDWQRNYDDNENEPVVLPARVPALLVNGVSGIAVGMTTNIPP 186 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ EI L++NP++S+++L+ I GPDFPTGGII+ R I+ +Y+ G+G VR Sbjct: 187 HNLSEIISGLHMLMENPDVSVKELMTAITGPDFPTGGIIM-GRSGILRAYKTGKGNIVVR 245 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313 A+ ++ G I+++EIPY V K+ L++KIA+L K + + I+DES + + Sbjct: 246 AKTSIDTEKSGRERIIISEIPYMVNKAELVKKIADLARDKVVDGITGIQDESDQKGLRIT 305 Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373 R +++ ++F + +++ F +NM + G P V+ L IL+ +LAH+ ++ Sbjct: 306 IDIRRDASASVVLNNLFKQTQLQSNFGVNMVAIVDGS-PHVLNLKQILQYYLAHQENIIT 364 Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDA 430 RR+ + ++ + R I++GL IA +IDEII IIR N D K +++RF L + Q A Sbjct: 365 RRTKYDLKKAEARAHIIEGLRIALDHIDEIIKIIRGSKNSDIAKEQLITRFGLDDRQAQA 424 Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490 IL++RL L LE +++ E +LL + + +L ++ I E+ ++++ F Sbjct: 425 ILDMRLVRLTGLERDKLEEEYRDLLEKIDDYKDILAKPERVDQIIFNELLDIQKRFGDE- 483 Query: 491 DLGRRRTTFCEVSRADKATL-QQAMIEKEPITVVISNRGWIRSLKSHSVDLS-------- 541 RRT E+S ++ ++ + +IEK+ + + +++ G+I+ + + + Sbjct: 484 ----RRT---EISDSEIISIDDEDLIEKQNVLLTLTHNGYIKRMPADEFKVQNRGGRGIR 536 Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLLSGRGH 586 + + D + ++ +T D +L + GK Y+ LP NL+ Sbjct: 537 GMGVQNDDFINHLIYVNTHDYLLFFTNKGKVYSKKSYEIPEYGRAAKGLPIINLVQLE-K 595 Query: 587 GEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS 646 GE +Q ++ + N D+ L+ V+ G + SE R G L + Sbjct: 596 GEKVQAVVKIATN---------DTNKYLMFVTKYGIVKRISISEFTNIRRSGLIALNLRE 646 Query: 647 EEKMKLVVKVTGDHVAVVGENRKL-LIFSIDQIPEMSR-GKGVR 688 +++ V+ G ++G +IF+ +++ M R GVR Sbjct: 647 NDELSNVLLTDGSQNILIGTRLGYAVIFNENEVRTMGRVASGVR 690 >gi|157827322|ref|YP_001496386.1| DNA gyrase subunit A [Rickettsia bellii OSU 85-389] gi|157802626|gb|ABV79349.1| DNA gyrase subunit A [Rickettsia bellii OSU 85-389] Length = 905 Score = 390 bits (1002), Expect = e-106, Method: Compositional matrix adjust. Identities = 254/719 (35%), Positives = 397/719 (55%), Gaps = 77/719 (10%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 N+ V++ ++ YL YA+S I RAIPD+RDG KPVHRRII++M E G A++KS Sbjct: 8 NLVPVNIEDEMKVSYLDYAMSVIVSRAIPDVRDGLKPVHRRIIYSMHEAGNHANRAYRKS 67 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 ARIVG+V+GK HPHGD ++YDSLVR+AQ F R PL+ GQGNFG++DGD+AAA RYTE+R Sbjct: 68 ARIVGDVMGKYHPHGDSAIYDSLVRMAQDFSLRLPLVDGQGNFGSLDGDAAAAMRYTESR 127 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 M +VA +++ +D++ V F Y+ + EP V PS FPNLL NG+ GIAVGMAT+IP HN Sbjct: 128 MAKVAHKLIEDIDKETVSFNPNYDGSEEEPSVLPSMFPNLLVNGSGGIAVGMATNIPPHN 187 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 + E+ +A +DN +I I LLE + GPDFPT GII+ I +Y GRG +R R Sbjct: 188 LGEVIDACCLYVDNNDIEILDLLEVVKGPDFPTSGIIL-GVNGIKSAYLTGRGSIAIRGR 246 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314 +E +G G I++TEIPY V K+RL+EKIAE++ KRI + D+RDES ++ +RI + Sbjct: 247 AEIENLGNGRQAIIITEIPYMVNKARLVEKIAEMVKEKRIEGISDLRDESNKNGIRIYIE 306 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K + + ++++ I+ + ++T F + M L G +P+VM L ++ +++ R V+ Sbjct: 307 LK-KDIVAEVVLNQIYSCTQLQTSFGVIMLALKDG-LPKVMNLKEVIAAFVSFREVVITN 364 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----------- 420 R+ + + + IL GL IA NIDEII II+ P K +++R Sbjct: 365 RTIYLLNKARDKAHILLGLTIAVSNIDEIIRIIKAASDPNAAKQELMARSWDALNILPLV 424 Query: 421 --------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466 S TE Q AIL +RL+ L +E+ +++ +L NL E + ++L Sbjct: 425 KLVDDKAMLNEEGKCSFTEAQAKAILEMRLQRLTAMEKNKLEEDLKNLATEITEYLNILG 484 Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526 S ++ + E+ +VKE F+ R T E D+ + +I++E + V ++ Sbjct: 485 SRERLLEILKEELIKVKEEFATP------RLTSIEFGEFDQDI--EDLIQREEMVVTVTL 536 Query: 527 RGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL--- 575 G+I R+ K S L ++ D T +L S G+ Y+L Sbjct: 537 GGYIKRVPLSSYRAQKRGGKGRSGLSMRDEDITTQVFVGSTHTPMLFFSNIGQVYSLKLY 596 Query: 576 ------------PAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGN- 622 P N+L +G E I ++ L NQD +D+ ++ ++KGN Sbjct: 597 KLPLSNPQGKGRPMVNILPLKGD-EHITNIMPLPENQD-----EWDN-LNIMFATAKGNI 649 Query: 623 --AFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQI 678 + +++ +I +N GK +++ ++K+ V D H+ + ++ K L F ++ + Sbjct: 650 RRSDLLDFKKIQSN---GKIAIRLDEDDKLIDVKPCKEDEHILLATKSGKALRFPVESL 705 >gi|329919804|ref|ZP_08276755.1| DNA gyrase, A subunit [Lactobacillus iners SPIN 1401G] gi|328937151|gb|EGG33579.1| DNA gyrase, A subunit [Lactobacillus iners SPIN 1401G] Length = 815 Score = 390 bits (1002), Expect = e-106, Method: Compositional matrix adjust. Identities = 233/704 (33%), Positives = 395/704 (56%), Gaps = 49/704 (6%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 + ++ V L + +L YA+S I RA+PD+RDG KPV RRI++ M+E+G+ +K Sbjct: 7 DHRIRNVDLTKTMRSSFLDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVFPDKPYK 66 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSARIVGEV+GK HPHGD S+Y+++ +AQ F RY L+ G GNFG+IDGD AA RYTE Sbjct: 67 KSARIVGEVMGKFHPHGDSSIYEAMAHMAQDFSYRYMLVDGHGNFGSIDGDRPAAMRYTE 126 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 ARM+++A +L+ +++D +D++ Y++ ++EPVV P++ P LL NG SGIAVGM T+IP Sbjct: 127 ARMSKIAMEMLRDINKDTIDWQRNYDDNENEPVVLPARVPALLVNGVSGIAVGMTTNIPP 186 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ EI L++NP++S+++L+ I GPDFPTGGII+ R I+ +Y+ G+G VR Sbjct: 187 HNLSEIISGLHMLMENPDVSVKELMTAITGPDFPTGGIIM-GRSGILRAYKTGKGNIVVR 245 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313 A+ ++ G I+++EIPY V K+ L++KIA+L K + + I+DES + + Sbjct: 246 AKTSIDTEKSGRERIIISEIPYMVNKAELVKKIADLARDKVVDGITGIQDESDQKGLRIT 305 Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373 R +++ ++F + +++ F +NM + G P V+ L IL+ +LAH+ ++ Sbjct: 306 IDIRRDASASVVLNNLFKQTQLQSNFGVNMVAIVDGS-PHVLNLKQILQYYLAHQENIIT 364 Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDA 430 RR+ + ++ + R I++GL IA +IDEII IIR N D K +++RF L + Q A Sbjct: 365 RRTKYDLKKAEARAHIIEGLRIALDHIDEIIKIIRGSKNSDIAKEQLITRFGLDDRQAQA 424 Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490 IL++RL L LE +++ E +LL + + +L ++ I E+ ++++ F Sbjct: 425 ILDMRLVRLTGLERDKLEEEYRDLLEKIDDYKDILAKPERVDQIIFNELLDIQKRFGDE- 483 Query: 491 DLGRRRTTFCEVSRADKATL-QQAMIEKEPITVVISNRGWIRSLKSHSVDLS-------- 541 RRT E+S ++ ++ + +IEK+ + + +++ G+I+ + + + Sbjct: 484 ----RRT---EISDSEIISIDDEDLIEKQNVLLTLTHNGYIKRMPADEFKVQNRGGRGIR 536 Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLLSGRGH 586 + + D + ++ +T D +L + GK Y+ LP NL+ Sbjct: 537 GMGVQNDDFINHLIYVNTHDYLLFFTNKGKVYSKKSYEIPEYGRAAKGLPIINLVQLE-K 595 Query: 587 GEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS 646 GE +Q ++ + N D+ L+ V+ G + SE R G L + Sbjct: 596 GEKVQAVVKIATN---------DTNKYLMFVTKYGIVKRISISEFTNIRRSGLIALNLRE 646 Query: 647 EEKMKLVVKVTGDHVAVVGENRKL-LIFSIDQIPEMSR-GKGVR 688 +++ V+ G ++G +IF+ +++ M R GVR Sbjct: 647 NDELSNVLLTDGSQNILIGTRLGYAVIFNENEVRTMGRVASGVR 690 >gi|90021793|ref|YP_527620.1| DNA gyrase subunit A [Saccharophagus degradans 2-40] gi|89951393|gb|ABD81408.1| DNA gyrase subunit A [Saccharophagus degradans 2-40] Length = 886 Score = 390 bits (1002), Expect = e-106, Method: Compositional matrix adjust. Identities = 238/603 (39%), Positives = 359/603 (59%), Gaps = 57/603 (9%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 V++ L++ YL YA+S I RA+PD+RDG KPVHRR++ AMSE+ D+ A+KKSAR+V Sbjct: 11 VTIEDELKKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELNNDWNKAYKKSARVV 70 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG+IDGDSAAA RYTE RM ++ Sbjct: 71 GDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRMAKI 130 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 + +L +D++ VDF Y+ + P V P++ PNLL NG+SGIAVGMAT+IP HN++E+ Sbjct: 131 SHELLADLDKETVDFVPNYDGTELIPAVLPTRVPNLLVNGSSGIAVGMATNIPPHNLREV 190 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 + LALIDNPEI+I++L+E+I GPDFPTG II R I+++YR GRG VRA+ VE Sbjct: 191 IKGCLALIDNPEITIDELMEHIPGPDFPTGAII-NGRAGILQAYRTGRGRIYVRAQAEVE 249 Query: 260 EVGR-GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318 + G IV+ EIPYQV K+RLIEKIAEL+ K+I + +IRDES +D V+ R Sbjct: 250 TNEKTGRETIVINEIPYQVNKARLIEKIAELVKEKKIEGISEIRDESDKDGLRVVVEIKR 309 Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378 ++++ +++ + ++ F +N+ L + P+++ L +L+ ++ HRREV+ RR+ + Sbjct: 310 GEMGEVVLNNLYAQTQLQNVFGINIVAL-VDDQPKLLNLKELLEYFVKHRREVVTRRTVY 368 Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR--------------- 420 ++ R +L+G +A NIDE+I +I++ P + M++R Sbjct: 369 LLRKARERGHVLEGQAVAIANIDEVITLIKSSPTPADARDAMLARGWPVGAVSEFLDRAG 428 Query: 421 ------------FSLTEN--------QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEK 460 F L E+ QV AIL+LRL L +E ++ +E + L + Sbjct: 429 ENACRPDGLPEEFGLREDGSYYLSPVQVQAILDLRLHRLTGMEHDKLLAEYEEKLIQIAG 488 Query: 461 IDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI 520 +L + ++ N IRE E+ D G R T + S D + +I +E Sbjct: 489 YLEILGNPERLMNV----IREELEVI--YNDYGDERRTVIQQSMTD--LTHEDLISEEDR 540 Query: 521 TVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKA 572 V IS+ G+ +S + + +A K+ D ++ L A+T D +L ++ GK Sbjct: 541 VVTISHGGYAKSQPLDAYQAQRRGGMGKAATSVKDEDFVEHLLIANTHDYLLCFTSVGKV 600 Query: 573 YTL 575 + L Sbjct: 601 FWL 603 Score = 37.7 bits (86), Expect = 7.7, Method: Compositional matrix adjust. Identities = 44/171 (25%), Positives = 73/171 (42%), Gaps = 14/171 (8%) Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS----GRGHGEA 589 + SV L A+ EGD L T I+LL++ GKA N+ S RG Sbjct: 666 RPRSVGLRAIDLVEGDHLVGTAITDGTKDIILLTSAGKAARFSEENVRSMGRVSRGV-RG 724 Query: 590 IQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649 +++ D++ ++ V + K+L VS G E +E A R + + + E+ Sbjct: 725 VRMADDVS----VIAMVVPEEGGKVLTVSENGFGKRTEVTEYPAKGRGSQGVIAMQMSER 780 Query: 650 MKLVVKVT----GDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDG 695 +V T GD + ++ L+ D++ R +GVRL K+G Sbjct: 781 NGCLVGATQVFEGDEIMLISNQGTLVRTRADEVSLSGRNTQGVRLIRVKEG 831 >gi|309804049|ref|ZP_07698130.1| DNA gyrase, A subunit [Lactobacillus iners LactinV 11V1-d] gi|308163817|gb|EFO66083.1| DNA gyrase, A subunit [Lactobacillus iners LactinV 11V1-d] Length = 815 Score = 390 bits (1002), Expect = e-106, Method: Compositional matrix adjust. Identities = 233/704 (33%), Positives = 395/704 (56%), Gaps = 49/704 (6%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 + ++ V L + +L YA+S I RA+PD+RDG KPV RRI++ M+E+G+ +K Sbjct: 7 DHRIRNVDLTKTMRSSFLDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVFPDKPYK 66 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSARIVGEV+GK HPHGD S+Y+++ +AQ F RY L+ G GNFG+IDGD AA RYTE Sbjct: 67 KSARIVGEVMGKFHPHGDSSIYEAMAHMAQDFSYRYMLVDGHGNFGSIDGDRPAAMRYTE 126 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 ARM+++A +L+ +++D +D++ Y++ ++EPVV P++ P LL NG SGIAVGM T+IP Sbjct: 127 ARMSKIAMEMLRDINKDTIDWQRNYDDNENEPVVLPARVPALLVNGVSGIAVGMTTNIPP 186 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ EI L++NP++S+++L+ I GPDFPTGGII+ R I+ +Y+ G+G VR Sbjct: 187 HNLSEIISGLHMLMENPDVSVKELMTAITGPDFPTGGIIM-GRSGILRAYKTGKGNIVVR 245 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313 A+ ++ G I+++EIPY V K+ L++KIA+L K + + I+DES + + Sbjct: 246 AKTSIDTEKSGRERIIISEIPYMVNKAELVKKIADLARDKVVDGITGIQDESDQKGLRIT 305 Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373 R +++ ++F + +++ F +NM + G P V+ L IL+ +LAH+ ++ Sbjct: 306 IDIRRDASASVVLNNLFKQTQLQSNFGVNMVAIVDGS-PHVLNLKQILQYYLAHQENIIT 364 Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDA 430 RR+ + ++ + R I++GL IA +IDEII IIR N D K +++RF L + Q A Sbjct: 365 RRTKYDLKKAEARAHIIEGLRIALDHIDEIIKIIRGSKNSDIAKEQLITRFGLDDRQAQA 424 Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490 IL++RL L LE +++ E +LL + + +L ++ I E+ ++++ F Sbjct: 425 ILDMRLVRLTGLERDKLEEEYRDLLEKIDDYKDILAKPERVDQIIFNELLDIQKRFGDE- 483 Query: 491 DLGRRRTTFCEVSRADKATL-QQAMIEKEPITVVISNRGWIRSLKSHSVDLS-------- 541 RRT E+S ++ ++ + +IEK+ + + +++ G+I+ + + + Sbjct: 484 ----RRT---EISDSEIISIDDEDLIEKQNVLLTLTHNGYIKRMPADEFKVQNRGGRGIR 536 Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLLSGRGH 586 + + D + ++ +T D +L + GK Y+ LP NL+ Sbjct: 537 GMGVQNDDFINHLIYVNTHDYLLFFTNKGKVYSKKSYEIPEYGRAAKGLPIINLVQLE-K 595 Query: 587 GEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS 646 GE +Q ++ + N D+ L+ V+ G + SE R G L + Sbjct: 596 GENVQAVVKIATN---------DTNKYLMFVTKYGIVKRISISEFTNIRRSGLIALNLRE 646 Query: 647 EEKMKLVVKVTGDHVAVVGENRKL-LIFSIDQIPEMSR-GKGVR 688 +++ V+ G ++G +IF+ +++ M R GVR Sbjct: 647 NDELSNVLLTDGSQNILIGTRLGYAVIFNENEVRTMGRVASGVR 690 >gi|325475508|gb|EGC78689.1| A subunit [Treponema denticola F0402] Length = 815 Score = 390 bits (1002), Expect = e-106, Method: Compositional matrix adjust. Identities = 226/611 (36%), Positives = 360/611 (58%), Gaps = 30/611 (4%) Query: 30 YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89 Y+ Y++S I RA+PD+RDG KPVHRRI+++M E GL +K A+IVG+V+G HPH Sbjct: 25 YIDYSMSVIVSRALPDVRDGLKPVHRRILYSMEEKGLRSSGPTRKCAKIVGDVLGSYHPH 84 Query: 90 GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDE 149 GD SVYD+LVRL Q F RYP+I QGNFG I GD AAYRYTEA+M ++AE +++ + + Sbjct: 85 GDASVYDALVRLGQDFSLRYPVIYPQGNFGTIGGDPPAAYRYTEAKMAKIAETMVEDIKK 144 Query: 150 DAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDN 209 + VDF +++ EP V P+KFP LLANG+SGIAVGMAT++P HN++EI +A A IDN Sbjct: 145 ETVDFIPNFDDSTKEPTVLPAKFPFLLANGSSGIAVGMATNMPPHNLREIADAVSAYIDN 204 Query: 210 PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIV 269 PEI I++L +Y+ GPDFPTGG+I R+ I ++++ GRG VR ++ +E +G IV Sbjct: 205 PEIEIDELCKYMKGPDFPTGGVIY-GRKGIKQAFKTGRGKILVRGKFTIEVDKKGKETIV 263 Query: 270 VTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE--DVRIVLFPKNRSLDPDLLME 327 TE+PYQV + L+ +I EL K I + ++ DE+++ +R+V+ K R +++ Sbjct: 264 FTEVPYQVNTTTLVSRIGELAREKIIDGIANVNDETSDRTGLRVVIELK-RGAITKVVLN 322 Query: 328 SIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRV 387 +F + +++ F + L GR P+ + L ++K ++ HR +V+ RR+ F ++ + R Sbjct: 323 QLFAKTALQSSFGVINLALVNGR-PETLNLKLLVKYFVEHRVDVVTRRTKFDLRKAEERA 381 Query: 388 EILKGLLIAYLNIDEIIAII---RNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEE 444 IL+ L++A NIDE+I II R+ K ++ RF + Q AI++++L+ L LE Sbjct: 382 HILEALIVAIDNIDEVIKIIRASRDTQTAKNNLMERFGFDDVQAQAIVDMQLKRLTSLEI 441 Query: 445 YQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSR 504 ++ EL L + LL ++ I E E+ E F G R T Sbjct: 442 EDLRKELQELQVLIAHLKDLLAHPEKILALIKEETNEIAEKF------GDERKTDIVADE 495 Query: 505 ADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD--------LSALHFKEGDSLKIALH 556 ++ ++ +I+KE + ++IS+ G+I+ + + + ++++ E D L Sbjct: 496 VEELNIED-LIKKEEMVILISHLGYIKRIPATAYKSQNRGGKGSNSVNLAEDDFLDQIFT 554 Query: 557 AHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAFV----YDS 610 A T D I+ ++ GKAY L + S G I+ L+ ++ +++I TA V +D Sbjct: 555 ASTHDYIMFITNAGKAYWLKVHEIQEASRTSRGSHIKSLLSVSSDEEI-TAVVSLKEFDD 613 Query: 611 TCKLLVVSSKG 621 LL+ ++ G Sbjct: 614 KTYLLMATAGG 624 >gi|325685101|gb|EGD27232.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 823 Score = 390 bits (1002), Expect = e-106, Method: Compositional matrix adjust. Identities = 218/628 (34%), Positives = 369/628 (58%), Gaps = 38/628 (6%) Query: 6 ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65 + N N + ++ V L + +L YA+S I RA+PD+RDG KPV RRI++ M+E+ Sbjct: 1 MDNENQGQDRRIRNVDLTQTMRSSFLDYAMSVIVARALPDVRDGLKPVQRRILYGMNELA 60 Query: 66 LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125 + +KKSARIVG+V+GK HPHGD S+Y ++ +AQ F RY L+ G GNFG++DGD Sbjct: 61 VTPDKPYKKSARIVGDVMGKYHPHGDSSIYLAMAHMAQDFAYRYMLVDGHGNFGSVDGDR 120 Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185 AA RYTEARM+++A +L+ ++++ VD++ Y++ ++EP V P++ PNLL NG+SGIAV Sbjct: 121 PAAMRYTEARMSKIAVEMLRDINKNTVDWQRNYDDTENEPTVLPARIPNLLVNGSSGIAV 180 Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245 GM T+IP HN+ E+ L+ NP+++ ++L++ I GPDFPTGGI++ R ++ +Y Sbjct: 181 GMTTNIPPHNLSEVISGIHMLMKNPDVTTKELMKAIPGPDFPTGGILM-GRGGVLHAYES 239 Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305 G+G VRA+ +E G I+V+EIPY V K+ L++KIAEL K I + +RDES Sbjct: 240 GKGNIVVRAKTEIETEKSGRERIIVSEIPYLVNKAELVQKIAELARDKVIDGITGVRDES 299 Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365 + + R +++ ++F + M++ F +NM + G P+ + L +L+ +L Sbjct: 300 DQSGMRITIDVRRDASASVVLNNLFKETQMQSNFAMNMVAIVDG-APKSLTLKQMLQYYL 358 Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFS 422 AH+ +V+ RR+ F ++ + R IL+GL +A +IDEI+++IRN D K ++SRF Sbjct: 359 AHQEDVITRRTKFDLEKAEARAHILEGLRVALDHIDEIVSLIRNSESSDIAKAGLISRFD 418 Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482 L + Q AIL++RL L LE +++ E LL + +L ++ I E+ ++ Sbjct: 419 LDDRQAQAILDMRLVRLTGLERDKVEGEYQELLVKIADYKDILAKPERIDQIIYDELLDI 478 Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSL-----KSH 536 ++ F +RRT +++ ++ T++ + +IE++ + + +S++G+++ + K+ Sbjct: 479 QKRFGD-----KRRT---QITASEVVTIEDEDLIEEQDVLLTLSHQGYVKRMLIDDFKTQ 530 Query: 537 S---VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAG 578 + + + ++GD ++ L++ T D + + GK Y LP Sbjct: 531 NRGGRGIKGMGVQKGDFIEHLLYSSTHDYLFFYTNKGKVYMKKAYEIPEYGRSAKGLPIV 590 Query: 579 NLLSGRGHGEAIQLLIDLNHNQDIVTAF 606 NLL GE IQ +++L D AF Sbjct: 591 NLLQ-LDKGEHIQTVVNLPQGHDDDYAF 617 >gi|254421736|ref|ZP_05035454.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Synechococcus sp. PCC 7335] gi|196189225|gb|EDX84189.1| DNA gyrase/topoisomerase IV, A subunit domain protein [Synechococcus sp. PCC 7335] Length = 803 Score = 390 bits (1002), Expect = e-106, Method: Compositional matrix adjust. Identities = 256/741 (34%), Positives = 406/741 (54%), Gaps = 50/741 (6%) Query: 35 LSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSV 94 +S I RA+PD+RDG KPVHRRI++AM E+GL F+K AR+VG+V+GK HPHGDQ+V Sbjct: 1 MSVIVGRALPDVRDGLKPVHRRIMYAMHELGLVPDRPFRKCARVVGDVLGKYHPHGDQAV 60 Query: 95 YDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQG-VDEDAVD 153 YD+LVR+ Q F RYPL++G GNFG++D D AA RYTE R+ ++ L G V E VD Sbjct: 61 YDALVRMVQDFSSRYPLLAGHGNFGSVDNDPPAAMRYTETRLAEIGHAALLGEVSEATVD 120 Query: 154 FRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEIS 213 F D ++ EP+V P++ PNL+ NG+SGIAVGMAT+IP HN+ E+ + +AL+D P +S Sbjct: 121 FIDNFDSSQQEPIVLPAQLPNLILNGSSGIAVGMATNIPPHNLGEVVDGLIALVDRPNLS 180 Query: 214 IEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEV--GRGS---WCI 268 E L + I GPDFPTG I++++ I ++YR GRG +R EE+ G+G I Sbjct: 181 NESLFKLIPGPDFPTGAEIIDTK-GIHDAYRTGRGSIPIRGIANFEEIRPGKGKRSRQAI 239 Query: 269 VVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMES 328 VVTE+PYQV K+ I KIA L+ RI + DIRDES + V+ R P L++ Sbjct: 240 VVTELPYQVNKASWITKIASLVNQGRIDGISDIRDESDREGMRVVIELKREAQPQLILND 299 Query: 329 IFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVE 388 ++ ++ ++T F M + G+ P+ + L IL+ +L R L R+ S ++ R Sbjct: 300 LYKMTALQTNFGALMLAIEDGQ-PRQLSLKEILEAFLNFRESTLIRQYSHELEQKRNRFH 358 Query: 389 ILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEY 445 I++GLLIA ++D+II I+RN K M+ F L++ Q D+IL + LR L LE+ Sbjct: 359 IVEGLLIALDSLDDIIDILRNAPDGTTAKVEMIEAFDLSDRQADSILAMPLRRLTGLEQQ 418 Query: 446 QIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRA 505 +++ E D L ++++L++ + E+R +K+ F G RR T + + A Sbjct: 419 KLRDESDELDERINQLETLVSDRNVLMKSLKKELRALKKKF------GDRRRTRIQ-TEA 471 Query: 506 DKATLQQAM------IEKEPITVVISNRGWIR----SLKSHSVDLSAL--HFKEGDSLKI 553 ++ +Q + +E + + +G++R ++ D S +E D + I Sbjct: 472 ERVKEEQVLAEIAAEESEEEFILEFTRKGYVRRASPKTRTRRKDASGPTKALEEFDDVTI 531 Query: 554 ALH-AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDL-----NHNQDIVTAFV 607 + T+ +L+L+ +GKA+TL ++ + + + L+ L + +VT V Sbjct: 532 QTEITNPTEEVLVLTQEGKAFTLSVSDVPIAQRQSKGVPLIGLLPDAVGSTPDSVVTQIV 591 Query: 608 YDS---TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK-LVVKVTGDHVAV 663 +L++V++KG + SE+ T +G T +K+ ++ +K + G + + Sbjct: 592 LSEARLAQQLILVTAKGRVKRLPASEMSNLTGRGLTAVKLKDDDLLKHAFIAPMGSDLVL 651 Query: 664 VGENRKLLIFSI--DQIPEMSRG----KGVRLQSYKDGGISDVICFKICEGLTWIDSAGR 717 ++L F I DQ+PEMSR +G+RL + V C + T I + + Sbjct: 652 ASSGGRVLRFRIDADQLPEMSRTAQGPQGIRLPKSE----RLVGCIPVSPKDTLILVSNK 707 Query: 718 SYNRSENDLLGWLGKRGGVGS 738 Y + RGG+GS Sbjct: 708 GYGKRILVSTFKTSNRGGIGS 728 >gi|115524770|ref|YP_781681.1| DNA gyrase subunit A [Rhodopseudomonas palustris BisA53] gi|115518717|gb|ABJ06701.1| DNA gyrase subunit A [Rhodopseudomonas palustris BisA53] Length = 918 Score = 390 bits (1002), Expect = e-106, Method: Compositional matrix adjust. Identities = 242/631 (38%), Positives = 354/631 (56%), Gaps = 55/631 (8%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 +++ VS+ ++ YL YA+S I RA+PD RDG KPVHRRI+ M E G ++ ++KS Sbjct: 19 DIRPVSILDEMKRSYLDYAMSVIVARALPDARDGLKPVHRRILFGMYENGFEWNKPYRKS 78 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 AR VG+VIGK HPHGDQSVYD++VR+AQ F R PLI GQGNFG++DGD+ AA RYTE+R Sbjct: 79 ARTVGDVIGKYHPHGDQSVYDAMVRMAQDFSMRVPLIDGQGNFGSVDGDAPAAMRYTESR 138 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 +T++A+L+L +D+D VD++D Y+ EP V P+KFPNLL NG GIAVGMAT+IP HN Sbjct: 139 LTKIAQLLLDDLDKDTVDYQDNYDGSFREPRVLPAKFPNLLVNGAGGIAVGMATNIPPHN 198 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 + E+ +A +ALI++P +SI+ L + I GPDFPTGGII+ R I +Y GRG +R + Sbjct: 199 LGEVIDACVALIEDPALSIDDLSKIIPGPDFPTGGIIL-GRAGIRLAYHTGRGSIVMRGK 257 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315 +E + I+++EIPYQV K+ ++E+IAEL+ K+I + D+RDES D V+ Sbjct: 258 VSIEPARKDREAIIISEIPYQVNKATMVERIAELVREKKIEGISDLRDESDRDGFRVVIE 317 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 R D+++ ++ + ++T F NM L GR P +M L +L ++A R +V+ RR Sbjct: 318 LRRDAVADVVLNQLYRFTPLQTNFGANMVALDAGR-PLLMNLKDLLTLFVAFREQVVTRR 376 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK----------------PVMVS 419 + F + R IL GL IA NIDEII +IR P M++ Sbjct: 377 TKFLLNKARDRAHILVGLAIAVANIDEIIRVIRASPDPATARDTLMSRDWPAQDVAAMIT 436 Query: 420 -----RFSLTEN--------QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466 R L E+ Q AIL+LRL+ L L +I ELD L E +L Sbjct: 437 LIDDPRHRLNEDGTARLSFEQAKAILDLRLQRLTALGREEISEELDKLAVEIADYLEILR 496 Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526 S + I E+ VK F+ RRT E+ + + +I++E + V +S+ Sbjct: 497 SRARVQTIIKDELAAVKAEFATP-----RRT---EIIEQEGEVEDEDLIQREDMVVTVSH 548 Query: 527 RGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---- 574 G++ R+ + + + +E D + A T +L S+ G+ Y Sbjct: 549 AGYVKRVPLSTYRAQRRGGKGRAGMATREEDFVSRLFVASTHTPVLFFSSRGQVYKEKVW 608 Query: 575 -LPAGNLLSGRGHGEAIQLLIDLNHNQDIVT 604 LP L G G+A+ ++ L + I T Sbjct: 609 RLP---LAPPNGRGKALINILPLEQGERINT 636 >gi|225575719|ref|ZP_03784329.1| hypothetical protein RUMHYD_03812 [Blautia hydrogenotrophica DSM 10507] gi|225037062|gb|EEG47308.1| hypothetical protein RUMHYD_03812 [Blautia hydrogenotrophica DSM 10507] Length = 834 Score = 390 bits (1002), Expect = e-106, Method: Compositional matrix adjust. Identities = 237/630 (37%), Positives = 366/630 (58%), Gaps = 35/630 (5%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 + V V L+ +E Y+ YA+S I RA+PD+RDG KPV RR++++M E+ +K Sbjct: 7 DKVHDVDLKKTMETSYIDYAMSVIAARALPDVRDGLKPVQRRVLYSMIELNNGPDKPHRK 66 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 ARIVG+ +GK HPHGD S+Y +LV +AQ + RYPL+ G GNFG++DGD AAA RYTEA Sbjct: 67 CARIVGDTMGKYHPHGDSSIYGALVNMAQEWSTRYPLVDGHGNFGSVDGDGAAAMRYTEA 126 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 R+++++ +L ++++ VDF ++E + EPVV PS++PNLL NGTSGIAVGMAT+IP H Sbjct: 127 RLSKISMEMLADINKNTVDFVPNFDETEREPVVLPSRYPNLLVNGTSGIAVGMATNIPPH 186 Query: 195 NVQEICEAALALIDN-----PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249 N++E+ + + +IDN + S+E++L+ I GPDFPTG I+ + I E+YR GRG Sbjct: 187 NLKEVIDGVVKIIDNIIEEDRDTSLEEILQVIKGPDFPTGATILGT-HGIEEAYRTGRGK 245 Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-ED 308 RVRA +E + G I+VTE+PY V K+RLIEKIAEL+ K++ + D+ D S E Sbjct: 246 IRVRAVTDIESLPNGKSRIIVTELPYLVNKARLIEKIAELVRDKKVEGITDLNDHSNREG 305 Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368 +RI + K + + ++++ ++ + ++ F + M L + P++M L +LK +LAH+ Sbjct: 306 MRICIDLK-KDANANVVLNQLYKHTQLQDTFGVIMLAL-INNQPKIMNLLEMLKHYLAHQ 363 Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTE 425 EV+ RR+ + + R IL+GLL A NIDE+I IIR P K ++ RF LTE Sbjct: 364 EEVVTRRTQYELNKAQERAHILEGLLKALDNIDEVIRIIRGARTPQTAKEQLMERFGLTE 423 Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485 Q AI+++RLR+L LE ++++E L+ + K ++L N + +RE EI Sbjct: 424 VQAQAIIDMRLRALTGLEREKLEAEYAELMEKIRKYKAIL----ADRNLLLRVVRE--EI 477 Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHS 537 S G R T D + + +I K+ + ++ G+I RS Sbjct: 478 LLISEKYGDDRRTQIGFDEFDIS--MEDLIPKQNTVITMTKLGYIKRMTVDNFRSQNRGG 535 Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEAIQLLID 595 + + E D ++ L T ++ + GK Y L A + +GR G AI L+ Sbjct: 536 KGIKGMQTIENDYIEELLMTTTHHYLMFFTNTGKVYRLKAYEIPEAGRTARGTAIINLLQ 595 Query: 596 LNHNQDIVTAFV----YDSTCKLLVVSSKG 621 L + I TA + ++ L++V+ KG Sbjct: 596 LAPGEKI-TAVIPLNKFEEGKYLMMVTKKG 624 >gi|153812025|ref|ZP_01964693.1| hypothetical protein RUMOBE_02418 [Ruminococcus obeum ATCC 29174] gi|149831924|gb|EDM87010.1| hypothetical protein RUMOBE_02418 [Ruminococcus obeum ATCC 29174] Length = 848 Score = 390 bits (1002), Expect = e-106, Method: Compositional matrix adjust. Identities = 238/650 (36%), Positives = 376/650 (57%), Gaps = 40/650 (6%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 + + V L+ +E+ Y+ YA+S I RA+PD+RDG KPV RR++++M E+ +K Sbjct: 7 DKIHEVDLQKTMEKSYIDYAMSVIASRALPDVRDGLKPVQRRVLYSMIELNNGPDKPHRK 66 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 ARIVG+ +GK HPHGD S+Y +LV +AQ + RYPL+ G GNFG++DGD AAA RYTEA Sbjct: 67 CARIVGDTMGKYHPHGDSSIYGALVNMAQDWSTRYPLVDGHGNFGSVDGDGAAAMRYTEA 126 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 R+++++ +L +++D VDF+ ++E + EPVV PS++PNLL NGTSGIAVGMAT+IP H Sbjct: 127 RLSKISMEMLADINKDTVDFQPNFDETEREPVVLPSRYPNLLVNGTSGIAVGMATNIPPH 186 Query: 195 NVQEICEAALALIDN-----PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249 N++E+ A + +IDN + +IE+LLE + GPDFPTG I+ +R I E+YR GRG Sbjct: 187 NLREVISAVVKIIDNIIEEDRDTTIEELLEIVKGPDFPTGATILGTR-GIEEAYRTGRGK 245 Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309 RVRA +E + G I+VTE+PY V K+RLIEKIAEL+ K+I + D+ D S+ + Sbjct: 246 IRVRAVTNIETLPNGKSRIIVTELPYLVNKARLIEKIAELVRDKKIDGITDLNDHSSREG 305 Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL---SMGRVPQVMPLDGILKEWLA 366 + + + ++++ ++ + ++ F + M L + P+V+ L +LK +LA Sbjct: 306 MRICIDLRKDANANVVLNQLYKHTQLQDTFGVIMLCLVAVNGSLQPKVLTLPEMLKHYLA 365 Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSL 423 H+ +V+ RR+ + + R IL+GLL A NIDE+I IIR K ++ RF L Sbjct: 366 HQEDVVTRRTKYDLNKAQERAHILEGLLKALDNIDEVIRIIRGSRSVQVAKQELMDRFEL 425 Query: 424 TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483 T+ Q AI+++RLR+L LE ++++E L+ + K+ ++L N + IRE Sbjct: 426 TDVQAQAIVDMRLRALTGLEREKLEAEYAELMEKIRKLKAIL----ADRNTLLRVIRE-- 479 Query: 484 EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKS 535 EI + S G R T D + + MI +E + ++ G+I RS Sbjct: 480 EILAISEKYGDDRRTAIGFDAFDIS--MEDMIPRENTVITMTKLGYIKRMTVDNFRSQNR 537 Query: 536 HSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEAIQLL 593 + + + D ++ + T ++ + G+ Y L A + +GR G AI L Sbjct: 538 GGRGIKGMQTLDDDYIEELMMTTTHHYVMFFTNTGRVYRLKAYEIPEAGRTARGTAIINL 597 Query: 594 IDLNHNQDIVTAFV----YDSTCKLLVVSSKGNAFIVEESEI--IANTRK 637 + L + I TA + ++ L++ + KG +V+++ I AN RK Sbjct: 598 LQLMPGERI-TAVIPISKFEEGQYLMMATRKG---LVKKTPIQDYANVRK 643 >gi|19746099|ref|NP_607235.1| DNA gyrase subunit A [Streptococcus pyogenes MGAS8232] gi|73919728|sp|Q8P116|GYRA_STRP8 RecName: Full=DNA gyrase subunit A gi|19748272|gb|AAL97734.1| DNA gyrase A subunit [Streptococcus pyogenes MGAS8232] Length = 828 Score = 390 bits (1001), Expect = e-106, Method: Compositional matrix adjust. Identities = 249/713 (34%), Positives = 403/713 (56%), Gaps = 55/713 (7%) Query: 12 LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71 + + N+ V+L ++ ++ YA+S I RA+PD+RDG KPVHRRI++ M+E+G+ Sbjct: 1 MQDRNLIDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKP 60 Query: 72 FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131 KKSARI G+V+GK HPHGD S+Y+++VR+AQ + R+ L+ G GNFG++DGD AAA RY Sbjct: 61 HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRY 120 Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191 TEARM+++A +L+ ++++ V+F+D Y+ + EPVV P++FPNLL NG +GIAVGMAT+I Sbjct: 121 TEARMSKIALELLRDINKNTVNFQDNYDGSEREPVVLPARFPNLLVNGATGIAVGMATNI 180 Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251 P HN+ E +A ++++P+ + +L+E I GPDFPTG +++ R I +Y G+G Sbjct: 181 PPHNLAESIDAVKMVMEHPDCTTRELMEVIPGPDFPTGALVM-GRSGIHRAYDTGKGSIV 239 Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVR 310 +R+R +E G IVVTE PY V K+++ E I L KR+ + +RDES+ E VR Sbjct: 240 LRSRTEIETTQTGRERIVVTEFPYGVNKTKVHEHIVRLAQEKRLEGITAVRDESSREGVR 299 Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370 V+ + R +++ ++F L+ ++T F NM + G VP+++ L I+ ++++++E Sbjct: 300 FVIEIR-REASATVILNNLFKLTSLQTNFSFNMLAIENG-VPKILSLRQIIDNYISYQKE 357 Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQ 427 V+ RR+ F + R IL+GLLIA ++DE+IAIIRN + + ++SRF L+E Q Sbjct: 358 VIIRRTRFDKDKAEARAHILEGLLIALDHLDEVIAIIRNSETDVIAQTELMSRFDLSERQ 417 Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487 AIL++RLR L LE +I+SE D+LLA + +L ++ I E+ E+K ++ Sbjct: 418 SQAILDMRLRRLTGLERDKIQSEYDDLLALIADLSDILAKPERIITIIKEEMDEIKRKYA 477 Query: 488 KSTDLGRRRTTFC--EVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHS 537 RRT EV + + +IE+E + + +SN+G+I+ L K Sbjct: 478 NP-----RRTELMVGEVL----SLEDEDLIEEEDVLITLSNKGYIKRLAQDEFRAQKRGG 528 Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLLS 582 + D ++ + T D +L + G+ Y LP NLL Sbjct: 529 RGVQGTGVNNDDFVRELVSTSTHDTLLFFTNFGRVYRLKAYEIPEYGRTAKGLPIVNLLK 588 Query: 583 GRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFL 642 GE IQ +I+ + +F + T K +V E SE + G L Sbjct: 589 LE-DGETIQTIINARKEETAGKSFFF--TTKQGIVKR------TEVSEFNNIRQNGLRAL 639 Query: 643 KVSSEEKMKLVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSRG----KGVRLQ 690 K+ +++ V+ +G ++G + + F+ I M R +GV+L+ Sbjct: 640 KLKEGDQLINVLLTSGQDDIIIGTHSGYSVRFNEASIRNMGRSATGVRGVKLR 692 >gi|291280741|ref|YP_003497575.1| DNA topoisomerase II, A subunit [Deferribacter desulfuricans SSM1] gi|290755443|dbj|BAI81819.1| DNA topoisomerase II, A subunit [Deferribacter desulfuricans SSM1] Length = 833 Score = 390 bits (1001), Expect = e-106, Method: Compositional matrix adjust. Identities = 254/714 (35%), Positives = 405/714 (56%), Gaps = 79/714 (11%) Query: 26 LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM-SEMGLDFGAAFKKSARIVGEVIG 84 ++ Y+ YA+S I R++PD+RDG KPV RRI++ M ++ +KKSARIVG+VIG Sbjct: 17 MKHNYIDYAMSVIIGRSLPDIRDGLKPVQRRILYDMYHDLHNTHEKPYKKSARIVGDVIG 76 Query: 85 KLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELIL 144 K HPHGD +VYD++VR+AQ FV RYPLI GQGNFG+IDGDS AA RYTE RMT++AE +L Sbjct: 77 KYHPHGDAAVYDTIVRMAQDFVFRYPLIDGQGNFGSIDGDSPAAMRYTEIRMTKIAEEML 136 Query: 145 QGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAAL 204 + +D+D VDF Y+ EP V P+K PNLL NGT+GIAVGMAT+IP HN++E+ +A L Sbjct: 137 KDIDKDTVDFIPNYDGSLKEPTVLPTKLPNLLINGTNGIAVGMATNIPPHNLKEVIKACL 196 Query: 205 ALIDNP---------------EISIE-------KLLEYIIGPDFPTGGIIVESRESIVES 242 L+ N ++S + K++ + PDFPTGGII+ S++ I + Sbjct: 197 YLLKNERSKSYLKEFYETNSVKVSDDIINQIHNKIMTILKAPDFPTGGIIINSKD-IPKI 255 Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302 YR G G +++A+ EV + I++TE+PY V KS LI KIA+L + +I + DI+ Sbjct: 256 YRNGTGSIKIKAKI---EVNKDQ--IIITELPYMVNKSDLIIKIADLSKSNKIQGIADIK 310 Query: 303 DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362 DES +D+RIV+ + ++ DP++++ ++ + + T F N + + Q+ LD +L Sbjct: 311 DESTKDIRIVIKLRKKT-DPNIVLNQLYKYTQLTTTFSCNFVGIYKNKPYQLNILD-LLF 368 Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAII---RNEDKPKPVMVS 419 +L+ R +++ RR+ F ++ ++ LKGL IA NID + II +N ++ Sbjct: 369 NFLSFRLDIINRRTQFLLRKNQNKLHKLKGLKIAVENIDNFVKIIKTAKNTTDATQKLMK 428 Query: 420 RFSLTENQVDAILNLRLRSLRKLE------EYQIKSELDNLLAEKEKIDSLLNSGKQQWN 473 ++ L + QV+ ILN+RL+ L LE EYQ E N+ KE +LNS +Q Sbjct: 429 KYKLDDIQVNEILNMRLQRLTSLEIEKLLNEYQETKE--NIQTYKE----ILNSYDKQIE 482 Query: 474 QIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL 533 I E+ ++++ + K+ +R T E D + + +I P+ ++ ++ G+I+ Sbjct: 483 LIINELHDLQKNYCKND----KRLTKLE--DEDISFDIKNLIPDNPVIIIYTDDGFIKKE 536 Query: 534 KSHSVDLS--ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL---SGRGHGE 588 V + + ++ DS K ++ ++LL + GK Y L ++ SG G Sbjct: 537 NISKVTKTGKTTNLQKNDSAKFIINTTNHKKLLLFTDTGKLYYLNVYDIPETGSGNSKGT 596 Query: 589 AIQLLIDLNHNQDIVTAFV---------YDSTCKLLVVSSKGNAFIVEESEI--IANTRK 637 I LI LN N IV YD C ++ KG +V+ + + N++ Sbjct: 597 HISNLIKLNTNDKIVLIRTQIHENEYSNYDMVC----ITEKG---LVKRTSLEEYKNSKN 649 Query: 638 GKTFLKVSSEEKMKLVV---KVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGV 687 G LK++S++K+ V K +++ ++ + K +IF+I+Q+ ++R KGV Sbjct: 650 GSLVLKLNSDDKLLKVFFINKQEENYLLMLSKQSKYIIFNINQVRTVARLAKGV 703 >gi|330718066|ref|ZP_08312666.1| DNA gyrase subunit A [Leuconostoc fallax KCTC 3537] Length = 851 Score = 390 bits (1001), Expect = e-106, Method: Compositional matrix adjust. Identities = 220/596 (36%), Positives = 351/596 (58%), Gaps = 20/596 (3%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 +K +L ++ +L+YA+S I RA+PD+RDG KPVHRRI+++M E G KKSA Sbjct: 9 IKNANLSEQMKTSFLSYAMSVIVARALPDVRDGMKPVHRRILYSMIEQGNTPDKPHKKSA 68 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 RIVG+V+GK HPHGD ++Y+S+VR+AQ F R+ LI G GNFG++DGDS AA RYTEAR+ Sbjct: 69 RIVGDVMGKYHPHGDSAIYESMVRMAQDFSYRHMLIDGHGNFGSVDGDSPAAMRYTEARL 128 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 +++A +++ +++D V+F Y+ E+ EP V P++FPNLL NG SGIAVGMATSIP+HN+ Sbjct: 129 SKIAMEMIRDLNKDTVNFVPNYDGEEREPEVLPARFPNLLVNGASGIAVGMATSIPTHNL 188 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ A L+DNP+++ +L+ + GPDFPTG I++ + I +Y GRG VRA+ Sbjct: 189 GEVISALHMLMDNPDVTTSELMTALPGPDFPTGAIVM-GKSGIRRAYETGRGTVTVRAKV 247 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316 +E+ G I+VTE+PY V K+RLIE+++EL+ KRI + IRDES + V Sbjct: 248 DIEQTKSGREQIIVTELPYMVNKARLIERVSELVRDKRIEGITGIRDESDREGLRVSIDV 307 Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376 R +++ +++ + ++T F NM + G+ P+ + L IL +L H+REV+ RR+ Sbjct: 308 RRDASASVILNNLYKQTLLQTSFSFNMLAIDHGK-PKTLNLKEILVAYLEHQREVIRRRT 366 Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLTENQVDAILN 433 +F ++ R IL+GL IA +ID II+IIR+ D+ K ++ +SL++ Q AIL+ Sbjct: 367 AFDLKKAQARAHILEGLRIALDHIDAIISIIRSSKTSDEAKGRLIESYSLSDKQAQAILD 426 Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493 +RL L LE +I+ E L A + +L + I E+ ++++ F G Sbjct: 427 MRLVRLTGLERDKIEDEYRKLEALITDLKDILAHSARVDKIIYNELLDIQQKF------G 480 Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD--------LSALHF 545 R T +V + + E++ I + SN G+I+ + + + ++ Sbjct: 481 DERRTELQVGDVTNIEDEDLIEEEDVIVTLTSN-GYIKRVPTAEFKAQNRGGRGVQGMNV 539 Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD 601 + D ++ + T + +L + GK Y + + H + I ++ LN + D Sbjct: 540 HDDDVIEQMVSTSTHNALLFFTNKGKVYRMKGYEIPEYGRHAKGIPVVNLLNFDND 595 >gi|296437564|gb|ADH19725.1| DNA gyrase subunit A [Chlamydia trachomatis G/11074] Length = 836 Score = 390 bits (1001), Expect = e-106, Method: Compositional matrix adjust. Identities = 232/593 (39%), Positives = 342/593 (57%), Gaps = 26/593 (4%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 EE + +L ++E YL Y++S I RA+PD RDG KP RRI++AM ++ L G + Sbjct: 5 EEIIVPKNLEEEMKESYLRYSMSVIISRALPDARDGLKPSQRRILYAMKQLNLTPGVKHR 64 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 K A+I G+ G HPHG+ +Y +LVR+AQ + RYPL+ GQGNFG+IDGD AAA RYTE Sbjct: 65 KCAKICGDTSGDYHPHGESVIYPTLVRMAQDWAMRYPLVDGQGNFGSIDGDPAAAMRYTE 124 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 AR+T A +L+ +D+D VD Y+E EPVVFPSKFPNLL NG+SGIAVGMAT+IP Sbjct: 125 ARLTHSAIFLLEDLDKDTVDMVPNYDETKYEPVVFPSKFPNLLCNGSSGIAVGMATNIPP 184 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E+ EA L ++ N + SIE +LE + GPDFPTGGII + E I +Y GRG R+R Sbjct: 185 HNLGELIEATLLVLANSQTSIEDILEVMPGPDFPTGGIICGT-EGIRSTYYTGRGKLRLR 243 Query: 254 ARWCVEE-VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRI 311 AR VEE + I++TE+PY V KSRLIE+I ELI K + + D+RDES +D +R+ Sbjct: 244 ARMHVEENSDKQRENIILTEMPYNVNKSRLIEQIVELINEKTLTGISDVRDESDKDGIRV 303 Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371 VL K + ++++ ++ +D++ F NM L +P+ M + ++ W+ HR +V Sbjct: 304 VLELK-KGESSEVVINRLYKFTDVQVTFGANMLALDKN-LPRTMNIHRMISAWIRHRMDV 361 Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQV 428 + RR+ + + + R IL+G L A +DE++ IR N++ K +V FS +E Q Sbjct: 362 IQRRTRYELNKAEARAHILEGFLKALSCMDEVVKTIRESSNKEHAKQQLVELFSFSEAQA 421 Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488 AIL LRL L LE +++ E LL + +L + + I E++E+ ++ Sbjct: 422 LAILELRLYQLTGLEADKVQKEYSELLEKITYYRKVLAEEELVKDIIREELQELHKVHKT 481 Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSVDL 540 R T E+ D ++ +I E + + IS +++ + K + Sbjct: 482 P------RRTRIEMDAGDVRDIED-IISDESVIITISGDDYVKRMPVKVFREQKRGGQGV 534 Query: 541 SALHFKEG-DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAI 590 + K+G D LK A T D +L+ + G+ Y L L G R G+ I Sbjct: 535 TGFDMKKGSDFLKAVYSASTKDYLLIFTNFGQCYWLKVWRLPEGERRAKGKPI 587 >gi|150396459|ref|YP_001326926.1| DNA gyrase subunit A [Sinorhizobium medicae WSM419] gi|150027974|gb|ABR60091.1| DNA gyrase, A subunit [Sinorhizobium medicae WSM419] Length = 931 Score = 390 bits (1001), Expect = e-106, Method: Compositional matrix adjust. Identities = 239/679 (35%), Positives = 374/679 (55%), Gaps = 61/679 (8%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 ++ +S+ ++ YL YA+S I RA+PD+RDG KPVHRRI++ MSE+G+D+ + K A Sbjct: 16 IEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYGMSELGIDWNKKYVKCA 75 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+ G+V+GK HPHG+ ++YD+L R+AQ + R PLI GQGNFG++DGD AA RYTE R+ Sbjct: 76 RVTGDVMGKYHPHGNAAIYDALARMAQDWSLRLPLIDGQGNFGSVDGDPPAAERYTECRL 135 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 + A +L +D++ VDFRD Y+ EPVV P+KFPNLL NG GIAVGMAT+IP HN+ Sbjct: 136 QKAAHSLLDDLDKETVDFRDNYDGTLHEPVVVPAKFPNLLVNGAGGIAVGMATNIPPHNL 195 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ +A +ALIDNP I + +L++ I GPDFPTG +I+ R I ++Y GRG +R R Sbjct: 196 GEVIDACIALIDNPAIELPELMQIIPGPDFPTGALIL-GRSGIRQAYETGRGSVIMRGRA 254 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316 +E + I++TEIPYQV KS +IEK+AEL+ KRI + D+RDES V+ Sbjct: 255 HIEPMRGDREQIIITEIPYQVNKSTMIEKMAELVRDKRIEGISDLRDESDRQGYRVVVEL 314 Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376 R + ++++ ++ + ++T F NM L+ G+ P+ M L +L+ +++ R EV+ RR+ Sbjct: 315 KRDANAEVILNQLYRYTPLQTSFGCNMVALNGGK-PEQMTLLDMLRAFVSFREEVVSRRT 373 Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP----VMVSR------------ 420 + ++ R +L GL IA NIDE+I +IR P+ +M R Sbjct: 374 KYLLRKARERAHVLVGLAIAVANIDEVIKLIRQAPDPQTAREQLMERRWPAHDVDGLIRL 433 Query: 421 -------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467 ++L+E Q AIL LRL+ L L +I EL+ + E + +L+S Sbjct: 434 IDDPRHRINDDATYNLSEEQARAILELRLQRLTALGRDEIGDELNKIGDEIKDYLDILSS 493 Query: 468 GKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNR 527 + + E+ V++ F RRT E++ + +I +E + V +S+ Sbjct: 494 RLRIMQIVKDELTSVRDEFGTP-----RRT---EIAEGGPDMDDEDLIAQEDMVVTVSHL 545 Query: 528 GWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYT 574 G+I R+ + S + ++ D + A+T +L S+ G K + Sbjct: 546 GYIKRVPLTTYRAQRRGGKGRSGMATRDEDFVTRLFVANTHTPVLFFSSRGIVYKEKVWR 605 Query: 575 LPAGNLLSGRGHGEAIQLLIDLNHNQDIVT--AFVYDSTC----KLLVVSSKGNAFIVEE 628 LP G S G+A+ ++ L + I T D T ++ +++G + Sbjct: 606 LPIGTPQS---RGKALINMLPLEPGERITTIMPLPEDETTWQNLDVMFSTTRGTVRRNKL 662 Query: 629 SEIIANTRKGKTFLKVSSE 647 S+ + R GK +K+ E Sbjct: 663 SDFVQVNRNGKIAMKLEEE 681 >gi|332978327|gb|EGK15053.1| DNA gyrase, A subunit [Psychrobacter sp. 1501(2011)] Length = 917 Score = 390 bits (1001), Expect = e-106, Method: Compositional matrix adjust. Identities = 229/630 (36%), Positives = 351/630 (55%), Gaps = 79/630 (12%) Query: 13 VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72 + ++V +++ +++ YL YA+S I RA+PD+RDG KPVHRRI++AM ++ D+ + Sbjct: 1 MSDSVSPIAIIDEMKQSYLDYAMSVIVSRALPDVRDGLKPVHRRIMYAMHQLSNDYNKPY 60 Query: 73 KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132 KKSAR+VG+VIGK HPHGD +VYD++VR+AQ F RYP++ GQGNFG+ID D AAA RYT Sbjct: 61 KKSARVVGDVIGKYHPHGDTAVYDAIVRMAQDFSLRYPMVDGQGNFGSIDDDPAAAMRYT 120 Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192 E RMT++ +L +D+D VD+ D Y+ + P V P++ PNLL NG +GIAVGMAT++ Sbjct: 121 EVRMTKLTHQMLADLDKDTVDWEDNYDGSERMPSVLPARIPNLLVNGATGIAVGMATNMA 180 Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252 HN+ E+ A LA DNP IS E+L YI GPDFPTGGII R IV++YR G+G + Sbjct: 181 PHNLTEVLNACLAYADNPNISSEELTNYISGPDFPTGGIIY-GRAGIVDAYRTGKGRVHI 239 Query: 253 RARWCVEE-----VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307 R R+ +E V R IV TEIPYQ K++LIE+IAEL+ K+I + +IRDES + Sbjct: 240 RGRYHIEPMSDTGVNRDRERIVFTEIPYQSNKAKLIERIAELVRDKKIEGISEIRDESDK 299 Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367 D + R ++++ ++F+ + +E+ F +NM L G+ P++M L ++ ++ H Sbjct: 300 DGMRIAIDLRRGEVAEVIVNNLFLQTPLESSFSINMVALDNGQ-PKLMTLRQLIAAFVRH 358 Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR------------------- 408 R+EV+ RR+ F + R +L+GL +A NID+IIA I+ Sbjct: 359 RQEVVTRRTIFELNKAKARGHLLEGLTVALANIDDIIATIKESANRGEAREKLLGQIWDS 418 Query: 409 -----------------------------NEDKPKPVMV----SRFSLTENQVDAILNLR 435 ED P + + + L+ QV+AIL ++ Sbjct: 419 GTVVAMLQAAGRGTLEAGDLRSVRPEYIEGEDFKNPFGLIDNGNNYRLSVEQVNAILEMQ 478 Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS--KSTDLG 493 L L LE ++ E +LL + +++S+L + I E+ E+ E F + TD+ Sbjct: 479 LHRLTGLEHDKLTEEYQDLLRQIAELESILADFDKLMLVIKNEMLEILENFGDERRTDIV 538 Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHF 545 RT F SR D +I ++ + + +S G+ ++ K SA Sbjct: 539 DSRTDF---SRED-------LIPEQSVVLTVSRTGYAKTQPISDYVAQKRGGKGKSATAM 588 Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTL 575 KE D + + T +L + +G+ ++L Sbjct: 589 KEDDVIDHLVVTSTHATVLCFTDNGRVFSL 618 >gi|315654136|ref|ZP_07907052.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus iners ATCC 55195] gi|315488832|gb|EFU78478.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus iners ATCC 55195] Length = 815 Score = 390 bits (1001), Expect = e-106, Method: Compositional matrix adjust. Identities = 233/704 (33%), Positives = 394/704 (55%), Gaps = 49/704 (6%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 + ++ V L + +L YA+S I RA+PD+RDG KPV RRI++ M+E+G+ +K Sbjct: 7 DHRIRNVDLTKTMRSSFLDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVFPDKPYK 66 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSARIVGEV+GK HPHGD S+Y+++ +AQ F RY L+ G GNFG+IDGD AA RYTE Sbjct: 67 KSARIVGEVMGKFHPHGDSSIYEAMAHMAQDFSYRYMLVDGHGNFGSIDGDRPAAMRYTE 126 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 ARM+++A +L+ +++D +D++ Y++ ++EPVV P++ P LL NG SGIAVGM T+IP Sbjct: 127 ARMSKIAMEMLRDINKDTIDWQRNYDDNENEPVVLPARVPALLVNGVSGIAVGMTTNIPP 186 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ EI L++NP++S+ +L+ I GPDFPTGGII+ R I+ +Y+ G+G VR Sbjct: 187 HNLSEIISGLHMLMENPDVSVRELMTAITGPDFPTGGIIM-GRSGILRAYKTGKGNIVVR 245 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313 A+ ++ G I+++EIPY V K+ L++KIA+L K + + I+DES + + Sbjct: 246 AKTSIDTEKSGRERIIISEIPYMVNKAELVKKIADLARDKVVDGITGIQDESDQKGLRIT 305 Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373 R +++ ++F + +++ F +NM + G P V+ L IL+ +LAH+ ++ Sbjct: 306 IDIRRDASASVVLNNLFKQTQLQSNFGVNMVAIVDGS-PHVLNLKQILQYYLAHQENIIT 364 Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDA 430 RR+ + ++ + R I++GL IA +IDEII IIR N D K +++RF L + Q A Sbjct: 365 RRTKYDLKKAEARAHIIEGLRIALDHIDEIIKIIRGSKNSDIAKEQLITRFGLDDRQAQA 424 Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490 IL++RL L LE +++ E +LL + + +L ++ I E+ ++++ F Sbjct: 425 ILDMRLVRLTGLERDKLEEEYRDLLEKIDDYKDILAKPERVDQIIFNELLDIQKRFGDE- 483 Query: 491 DLGRRRTTFCEVSRADKATL-QQAMIEKEPITVVISNRGWIRSLKSHSVDLS-------- 541 RRT E+S ++ ++ + +IEK+ + + +++ G+I+ + + + Sbjct: 484 ----RRT---EISDSEIISIDDEDLIEKQNVLLTLTHNGYIKRMPADEFKVQNRGGRGIR 536 Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLLSGRGH 586 + + D + ++ +T D +L + GK Y+ LP NL+ Sbjct: 537 GMGVQNDDFINHLIYVNTHDYLLFFTNKGKVYSKKSYEIPEYGRAAKGLPIINLVQLE-K 595 Query: 587 GEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS 646 GE +Q ++ + N D+ L+ V+ G + SE R G L + Sbjct: 596 GEKVQAVVKIATN---------DTNKYLMFVTKYGIVKRISISEFTNIRRSGLIALNLRE 646 Query: 647 EEKMKLVVKVTGDHVAVVGENRKL-LIFSIDQIPEMSR-GKGVR 688 +++ V+ G ++G +IF+ +++ M R GVR Sbjct: 647 NDELSNVLLTDGSQNILIGTRLGYAVIFNENEVRTMGRVASGVR 690 >gi|312873306|ref|ZP_07733361.1| DNA gyrase, A subunit [Lactobacillus iners LEAF 2052A-d] gi|325912221|ref|ZP_08174618.1| DNA gyrase, A subunit [Lactobacillus iners UPII 143-D] gi|311091186|gb|EFQ49575.1| DNA gyrase, A subunit [Lactobacillus iners LEAF 2052A-d] gi|325475880|gb|EGC79049.1| DNA gyrase, A subunit [Lactobacillus iners UPII 143-D] Length = 815 Score = 390 bits (1001), Expect = e-106, Method: Compositional matrix adjust. Identities = 233/704 (33%), Positives = 395/704 (56%), Gaps = 49/704 (6%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 + ++ V L + +L YA+S I RA+PD+RDG KPV RRI++ M+E+G+ +K Sbjct: 7 DHRIRNVDLTKTMRSSFLDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVFPDKPYK 66 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSARIVGEV+GK HPHGD S+Y+++ +AQ F RY L+ G GNFG+IDGD AA RYTE Sbjct: 67 KSARIVGEVMGKFHPHGDSSIYEAMAHMAQDFSYRYMLVDGHGNFGSIDGDRPAAMRYTE 126 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 ARM+++A +L+ +++D +D++ Y++ ++EPVV P++ P LL NG SGIAVGM T+IP Sbjct: 127 ARMSKIAMEMLRDINKDTIDWQRNYDDNENEPVVLPARVPALLVNGVSGIAVGMTTNIPP 186 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ EI L++NP++S+++L+ I GPDFPTGGII+ R I+ +Y+ G+G VR Sbjct: 187 HNLSEIISGLHMLMENPDVSVKELMTAITGPDFPTGGIIM-GRSGILRAYKTGKGNIVVR 245 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313 A+ ++ G I+++EIPY V K+ L++KIA+L K + + I+DES + + Sbjct: 246 AKTSIDTEKSGRERIIISEIPYMVNKAELVKKIADLARDKVVDGITGIQDESDQKGLRIT 305 Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373 R +++ ++F + +++ F +NM + G P V+ L IL+ +LAH+ ++ Sbjct: 306 IDIRRDASASVVLNNLFKQTQLQSNFGVNMVAIVDGS-PHVLNLKQILQYYLAHQENIIT 364 Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDA 430 RR+ + ++ + R I++GL IA +IDEII IIR N D K +++RF L + Q A Sbjct: 365 RRTKYDLKKAEARAHIIEGLRIALDHIDEIIKIIRGSKNSDIAKDQLITRFGLDDRQAQA 424 Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490 IL++RL L LE +++ E +LL + + +L ++ I E+ ++++ F Sbjct: 425 ILDMRLVRLTGLERDKLEEEYRDLLEKIDDYKDILAKPERVDQIIFNELLDIQKRFGDE- 483 Query: 491 DLGRRRTTFCEVSRADKATL-QQAMIEKEPITVVISNRGWIRSLKSHSVDLS-------- 541 RRT E+S ++ ++ + +IEK+ + + +++ G+I+ + + + Sbjct: 484 ----RRT---EISDSEIISIDDEDLIEKQNVLLTLTHNGYIKRMPADEFKVQNRGGRGIR 536 Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLLSGRGH 586 + + D + ++ +T D +L + GK Y+ LP NL+ Sbjct: 537 GMGVQNDDFINHLIYVNTHDCLLFFTNKGKVYSKKSYEIPEYGRAAKGLPIINLVQLE-K 595 Query: 587 GEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS 646 GE +Q ++ + N D+ L+ V+ G + SE R G L + Sbjct: 596 GEKVQAVVKIATN---------DTNKYLMFVTKYGIVKRISISEFTNIRRSGLIALNLRE 646 Query: 647 EEKMKLVVKVTGDHVAVVGENRKL-LIFSIDQIPEMSR-GKGVR 688 +++ V+ G ++G +IF+ +++ M R GVR Sbjct: 647 NDELSNVLLTDGSQNILIGTRLGYAVIFNENEVRTMGRVASGVR 690 >gi|332299199|ref|YP_004441121.1| DNA gyrase, A subunit [Treponema brennaborense DSM 12168] gi|332182302|gb|AEE17990.1| DNA gyrase, A subunit [Treponema brennaborense DSM 12168] Length = 817 Score = 390 bits (1001), Expect = e-106, Method: Compositional matrix adjust. Identities = 241/687 (35%), Positives = 390/687 (56%), Gaps = 29/687 (4%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 VS+ +++ Y+ Y++S I RA+PD+RDG KPVHRRI++AM+E GL + +K A +V Sbjct: 15 VSIEAEMKKAYIDYSMSVIVSRALPDVRDGMKPVHRRILYAMNEEGLHYSGKTRKCATVV 74 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+V+G+ HPHGD SVYD++VRL Q F RY I QGNFG IDG AAAYRYTEA+M+ V Sbjct: 75 GDVLGRYHPHGDASVYDAIVRLGQHFSMRYMPIQKQGNFGGIDGSPAAAYRYTEAKMSTV 134 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 AE ++ + ++ VDF +++ EP V P+KFP LLANG+SGIAVGMAT++P HN++EI Sbjct: 135 AEEMVADIKKETVDFLPNFDDTRQEPTVLPAKFPFLLANGSSGIAVGMATNMPPHNLREI 194 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 C A A IDNP++S+E+L + GPDFPTGGII R I ++Y+ GRG +R R+ +E Sbjct: 195 CSAISAYIDNPDVSLEELCGIVKGPDFPTGGIIF-GRRGIKQAYKTGRGKILIRGRFNIE 253 Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLFPKNR 318 RG I+ TEIPYQV+ L ++I EL K I +E + D SA +DVRIV+ K R Sbjct: 254 VDKRGRETIIFTEIPYQVRTDDLCKRIGELARDKIIEGIERVNDGSAGDDVRIVIELK-R 312 Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378 +++ +F + +++ F + L GR P+++ L +++ ++ HR+EV+ RR+ + Sbjct: 313 GAIAKVVLNQLFSKTALQSSFGVINLALVKGR-PEILTLKDLIRYFVEHRQEVVTRRTRY 371 Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAII---RNEDKPKPVMVSRFSLTENQVDAILNLR 435 ++ + R IL+ L++A NIDE+I II R+ K ++ RF + Q AI++++ Sbjct: 372 DLRKAEERAHILRALIVAIDNIDEVIRIIRGSRDTQTAKNGLMERFEFDDVQAQAIVDMQ 431 Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495 L+ L LE ++ EL L + LL ++ I E ++E + G Sbjct: 432 LKRLTNLEIEDLRRELAELETLIVHLKDLLAHPEKILALIKEETESLREKY------GDD 485 Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIA- 554 R T ++ ++ +I++E + ++ISN G+I+ + + K +S K+ Sbjct: 486 RRTDIVADEVEQINIED-LIKEEEMVILISNLGYIKRIPLTAYKAQGRGGKGSNSAKLVE 544 Query: 555 -------LHAHTTDRILLLSTDGKAYTLPAGNLL-SGRG-HGEAIQLLIDLNHNQDIVTA 605 A T D I+ ++ +GK+Y L + +GR G I+ L+ ++ N++I T Sbjct: 545 DDFINQIFIASTHDYIMFITNEGKSYWLKVHEIPEAGRNSRGAHIKGLLTVSPNEEITTV 604 Query: 606 FV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHV 661 + L + ++ G V+ S+ +G +++ +K+ + G D + Sbjct: 605 VSLKEFSDEQYLFMATAAGVVKKVQTSQFSNAKTRGIIAIRLDEGDKLVTAILSGGTDEL 664 Query: 662 AVVGENRKLLIFSIDQIPEMSR-GKGV 687 ++ + L + + M R G+GV Sbjct: 665 ILISRRGQALRITETSVRPMGRAGRGV 691 >gi|42560567|ref|NP_975018.1| DNA gyrase subunit A [Mycoplasma mycoides subsp. mycoides SC str. PG1] gi|42492063|emb|CAE76660.1| DNA Gyrase Subunit A [Mycoplasma mycoides subsp. mycoides SC str. PG1] gi|301321261|gb|ADK69904.1| DNA gyrase, A subunit [Mycoplasma mycoides subsp. mycoides SC str. Gladysdale] Length = 834 Score = 390 bits (1001), Expect = e-106, Method: Compositional matrix adjust. Identities = 262/760 (34%), Positives = 418/760 (55%), Gaps = 43/760 (5%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + + + + + +L YA+S I RA+PDL+DG KPVHRRII+AM+++G+ KKSA Sbjct: 22 ISPIDISTEVRKDFLEYAMSVIVSRALPDLKDGLKPVHRRIIYAMNDLGITSDKPHKKSA 81 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 RIVGEVIGK HPHGD +VY+++VR+AQ F RYPLI G GNFG+IDGD AAA RYTEAR+ Sbjct: 82 RIVGEVIGKYHPHGDSAVYETMVRMAQEFSYRYPLIDGHGNFGSIDGDGAAAMRYTEARL 141 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 +++ +++ +D D V F D Y+ + EP PNLL NGT GIAVGMATSIP HN+ Sbjct: 142 AKISNYLIKDIDMDTVPFIDNYDASEHEPAYLTGYLPNLLVNGTMGIAVGMATSIPPHNL 201 Query: 197 QEICEAALALIDNPEISIEKLL-EYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 +E+ A A IDN +I+I+++L ++I+GPDFPTG ++ + + E Y+ GRG +RA+ Sbjct: 202 KEVVSAINAYIDNNDITIDEILNDHILGPDFPTGALMTNGSK-MREGYKTGRGSVIIRAK 260 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLF 314 EE + VVTEIPYQ K+++IEKIAEL+ K I + DIRDES E +RI++ Sbjct: 261 IDFEE-NKKHDRFVVTEIPYQTNKAKIIEKIAELVKDKTIEGIFDIRDESNYEGIRIIIE 319 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K + +PD+++ ++ + +++ F +N+ L+ +P ++ L I+K ++ + V+ + Sbjct: 320 LK-KDANPDVVLSKLYKYTALQSSFSINLLTLNN-NLPVLLDLKTIIKNYVEFQVSVIIK 377 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLTENQVDAI 431 RS F + +R IL+ L IA N+D++I II+N ++ K + ++++ E Q AI Sbjct: 378 RSIFEKNKLTKRYHILEALHIALDNVDDVINIIKNSKTSEEAKVELTNKYNFDEEQNKAI 437 Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491 L++RL+ L LE +I E+ N+ +D L+N+ ++Q N + ++ E+ + F + Sbjct: 438 LDMRLQRLVGLERDKITLEMTNIKERLTYLDVLINTKEEQDNVLKNQLNEIADKFGDN-- 495 Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS-------ALH 544 RRT + + + +I +++S G+IR + + +++ Sbjct: 496 ---RRTELIDEELIN--IEDEELIPDLKWMILLSQEGYIRRINPDEFRIQKRGGRGVSVN 550 Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNH--NQDI 602 + D + IA D +L + GK Y N+ S + ++ LN ++D Sbjct: 551 AEPSDPIDIATMGKAKDWVLFFTNSGKVYRTKLYNIRSYSRTARGLPIVNFLNDLTSEDK 610 Query: 603 VTAFVYDSTCK-----LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657 +TA + K L V+ KG + SE R GK + + +++ V T Sbjct: 611 ITAILPLRNNKEKFNYLTFVTQKGMIKRTKISEFENINRNGKKAINLRENDQLVSVFATT 670 Query: 658 G-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKD-----GGISDVICFKICEGLT 710 G D V + E+ K++ + SR G GVR +D G IS FK+ +T Sbjct: 671 GQDTVFIANESGKVIRIKESVVNPQSRVGGGVRALKLEDDDVVVGAIS---SFKLTH-IT 726 Query: 711 WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750 + + G +D + R G G V R+GKF Sbjct: 727 TVSNKGLFKKTPIDDY--RISGRNGKGIKVMNLNQRTGKF 764 >gi|309804847|ref|ZP_07698909.1| DNA gyrase, A subunit [Lactobacillus iners LactinV 09V1-c] gi|309809733|ref|ZP_07703587.1| DNA gyrase, A subunit [Lactobacillus iners SPIN 2503V10-D] gi|308165786|gb|EFO68007.1| DNA gyrase, A subunit [Lactobacillus iners LactinV 09V1-c] gi|308169912|gb|EFO71951.1| DNA gyrase, A subunit [Lactobacillus iners SPIN 2503V10-D] Length = 815 Score = 390 bits (1001), Expect = e-106, Method: Compositional matrix adjust. Identities = 233/704 (33%), Positives = 395/704 (56%), Gaps = 49/704 (6%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 + ++ V L + +L YA+S I RA+PD+RDG KPV RRI++ M+E+G+ +K Sbjct: 7 DHRIRNVDLTKTMRSSFLDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVFPDKPYK 66 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSARIVGEV+GK HPHGD S+Y+++ +AQ F RY L+ G GNFG+IDGD AA RYTE Sbjct: 67 KSARIVGEVMGKFHPHGDSSIYEAMAHMAQDFSYRYMLVDGHGNFGSIDGDRPAAMRYTE 126 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 ARM+++A +L+ +++D +D++ Y++ ++EPVV P++ P LL NG SGIAVGM T+IP Sbjct: 127 ARMSKIAMEMLRDINKDTIDWQRNYDDNENEPVVLPARVPALLVNGVSGIAVGMTTNIPP 186 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ EI L++NP++S+++L+ I GPDFPTGGII+ R I+ +Y+ G+G VR Sbjct: 187 HNLSEIISGLHMLMENPDVSVKELMTAITGPDFPTGGIIM-GRSGILRAYKTGKGNIVVR 245 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313 A+ ++ G I+++EIPY V K+ L++KIA+L K + + I+DES + + Sbjct: 246 AKTSIDTEKSGRERIIISEIPYMVNKAELVKKIADLARDKVVDGITGIQDESDQKGLRIT 305 Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373 R +++ ++F + +++ F +NM + G P V+ L IL+ +LAH+ ++ Sbjct: 306 IDIRRDASASVVLNNLFKQTQLQSNFGVNMVAIVDGS-PHVLNLKQILQYYLAHQENIIT 364 Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDA 430 RR+ + ++ + R I++GL IA +IDEII IIR N D K +++RF L + Q A Sbjct: 365 RRTKYDLKKAEARAHIIEGLRIALDHIDEIIKIIRGSKNSDIAKEQLITRFGLDDRQAQA 424 Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490 IL++RL L LE +++ E +LL + + +L ++ I E+ ++++ F Sbjct: 425 ILDMRLVRLTGLERDKLEEEYRDLLEKIDDYKDILAKPERVDQIIFNELLDIQKRFGDE- 483 Query: 491 DLGRRRTTFCEVSRADKATL-QQAMIEKEPITVVISNRGWIRSLKSHSVDLS-------- 541 RRT E+S ++ ++ + +IEK+ + + +++ G+I+ + + + Sbjct: 484 ----RRT---EISDSEIISIDDEDLIEKQNVLLTLTHNGYIKRMPADEFKVQNRGGRGIR 536 Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLLSGRGH 586 + + D + ++ +T D +L + GK Y+ LP NL+ Sbjct: 537 GMGVQNDDFINHLIYVNTHDCLLFFTNKGKVYSKKSYEIPEYGRAAKGLPIINLVQLE-K 595 Query: 587 GEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS 646 GE +Q ++ + N D+ L+ V+ G + SE R G L + Sbjct: 596 GEKVQAVVKIATN---------DTNKYLMFVTKYGIVKRISISEFTNIRRSGLIALNLRE 646 Query: 647 EEKMKLVVKVTGDHVAVVGENRKL-LIFSIDQIPEMSR-GKGVR 688 +++ V+ G ++G +IF+ +++ M R GVR Sbjct: 647 NDELSNVLLTDGSQNILIGTRLGYAVIFNENEVRTMGRVASGVR 690 >gi|225377590|ref|ZP_03754811.1| hypothetical protein ROSEINA2194_03240 [Roseburia inulinivorans DSM 16841] gi|225210566|gb|EEG92920.1| hypothetical protein ROSEINA2194_03240 [Roseburia inulinivorans DSM 16841] Length = 871 Score = 389 bits (1000), Expect = e-106, Method: Compositional matrix adjust. Identities = 206/493 (41%), Positives = 313/493 (63%), Gaps = 15/493 (3%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 + + V L+ +E Y+ YA+S I +RA+PD+RDG KPV RR++++M E+ +K Sbjct: 7 DQIHDVDLKKTMETSYIDYAMSVIAQRALPDVRDGLKPVQRRVLYSMIELNNGPDKPHRK 66 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 ARIVG+ +GK HPHGD S+Y +LV +AQ + RYPL+ G GNFG++DGD AAA RYTEA Sbjct: 67 CARIVGDTMGKYHPHGDSSIYGALVNMAQDWSTRYPLVDGHGNFGSVDGDGAAAMRYTEA 126 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 R+++++ +L +++D VDF ++E + EP V PS++PNLL NGT+GIAVGMAT+IP H Sbjct: 127 RLSKISMEMLADINKDTVDFVPNFDETEKEPTVLPSRYPNLLVNGTTGIAVGMATNIPPH 186 Query: 195 NVQEICEAALALIDNPEI-----SIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249 N++E+ A + +IDN + IE+LL + GPDFPTG +I+ + I E+YR GRG Sbjct: 187 NLREVIHAVVKIIDNEVLEDRGTDIEELLSIVKGPDFPTGAMILGT-TGINEAYRTGRGK 245 Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309 RVRA +E + G IVVTE+PY V K+RLIEKIAEL+ K+I + D+RDES Sbjct: 246 IRVRAITNIEPMQNGKNRIVVTELPYMVNKARLIEKIAELVRDKKIDGITDLRDESDRQG 305 Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369 + R ++P++++ ++ + M+ F + M L + P+V+ L +L +L H++ Sbjct: 306 MRICIELRRDVNPNVVLNLLYKHTQMQDTFGVIMLAL-VDNQPKVLNLQEMLGYYLDHQK 364 Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTEN 426 +V+ RR+ + + + R IL+GLLIA NIDE+I IIR N + K ++ RFSLT+ Sbjct: 365 DVVTRRTKYDLNKAEERAHILEGLLIALDNIDEVINIIRSSANTPEAKNRLIERFSLTDV 424 Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486 Q AI+++RLR+L LE +I++E L+ ++ ++L K+ I EI + E + Sbjct: 425 QAQAIVDMRLRALTGLEREKIEAEYAELMDRIAELKAILADEKKLLGVIREEILLIAEKY 484 Query: 487 SKSTDLGRRRTTF 499 RRT+ Sbjct: 485 GDE-----RRTSI 492 >gi|86604741|ref|YP_473504.1| type II DNA topoisomerase, A subunit [Synechococcus sp. JA-3-3Ab] gi|86553283|gb|ABC98241.1| type II DNA topoisomerase, A subunit [Synechococcus sp. JA-3-3Ab] Length = 849 Score = 389 bits (1000), Expect = e-106, Method: Compositional matrix adjust. Identities = 237/700 (33%), Positives = 383/700 (54%), Gaps = 43/700 (6%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 V L+ ++ YL YA+S I RA+PD+RDG KPVHRRI++AM E+GL ++K A Sbjct: 23 VIVTDLQGEMQRSYLEYAMSVIVGRALPDVRDGLKPVHRRILYAMHELGLTPDRPYRKCA 82 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+V+GK HPHGDQ+VYD+LVR+AQ F RYPL++G GNFG++D D AA RYTE R+ Sbjct: 83 RVVGDVLGKYHPHGDQAVYDALVRMAQDFSSRYPLVAGHGNFGSVDDDPPAAMRYTECRL 142 Query: 137 TQVAEL-ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 +++ +LQG+ E VDF ++ +EP V P++ P LL NG++GIAVGMAT+IP HN Sbjct: 143 AELSHTALLQGISEAIVDFMPNFDGSQAEPTVLPARLPILLLNGSAGIAVGMATNIPPHN 202 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 + E+ + LALID P++S E+LL +I GPDFPTGG IV+ + I E+Y GRG +R Sbjct: 203 LGEVVDGLLALIDEPDLSPEELLRWIPGPDFPTGGQIVDG-QGIREAYLTGRGSITLRGV 261 Query: 256 WCVEEV--GRGSW---CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310 EE+ GRG ++++E PYQV K+ +EK+AEL+ R+ + D+RDES Sbjct: 262 ARFEEIQPGRGRHRRPALIISEFPYQVNKAAWLEKVAELVAQDRLSGIADLRDESDRSGM 321 Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370 V+ R +P +++ ++ L+ +++ F + + L G+ PQ + L IL+ +L R Sbjct: 322 RVVVELKREANPQAVLQQLYKLTPLQSTFGVILLALVEGK-PQQLSLKQILQHFLQFREA 380 Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQ 427 L R +Q + R+ E + G+++A +++ +I ++R + K + +R T Q Sbjct: 381 TLKRMFRAELQQVQRKAEEVAGMVLALADLEGVIDLLRQAPDSATAKAQLQTRLGCTSQQ 440 Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487 + IL + LR L LE ++ E L A ++ LL ++ N + E+R +K+ F+ Sbjct: 441 AETILAMPLRRLTTLERERLYQEQAELQARIAELQGLLQDRRKLLNYLKKELRHLKKTFA 500 Query: 488 KSTDLGRRRTTFCEVSRADKATLQ---QAMIEKEPITVVISNRGWIRSL-----KSHSVD 539 RRT S + Q E + ++ +G++R L +S S Sbjct: 501 DP-----RRTQILSASELEAEAAQIPGGEAGEDSRFLLQLTRKGYVRRLPLPGPRSRS-- 553 Query: 540 LSALHFKEGDSLKIALHAHTTDR-ILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNH 598 + + G+ ++L T ++ IL+L+ G+A+T+P + G + L+ L + Sbjct: 554 -NPAQRELGEDTLVSLECVTPEQAILVLTASGRAFTVPIEGIPLSTGSSRGVPLVTLLPN 612 Query: 599 NQDIVTAFVYDST-----------CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE 647 + IV AF D L+V+S +G V +E++ +++G LK+ Sbjct: 613 PEPIVAAFPLDPVRVSGAEHSPGEASLVVLSRQGRIKRVALAELVGLSQRGAAVLKLKEG 672 Query: 648 EKMKLVVKVTGDH----VAVVGENRKLLIFSIDQIPEMSR 683 +++ H V + ++L +QIP M R Sbjct: 673 DELGWAALWHPGHQGYSVVLATSGGRVLRLDAEQIPLMGR 712 >gi|149774749|gb|ABR28421.1| DNA gyrase A subunit [Delftia tsuruhatensis] Length = 888 Score = 389 bits (1000), Expect = e-106, Method: Compositional matrix adjust. Identities = 233/620 (37%), Positives = 356/620 (57%), Gaps = 67/620 (10%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 +SL + YL YA+S I RA+PD RDG KPVHRR++ AM E+ D+ +KKSARIV Sbjct: 11 ISLEEEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHELNNDWNRPYKKSARIV 70 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGD +VYD++VR+AQ F R+ L+ GQGNFG++DGDSAAA RYTE R++++ Sbjct: 71 GDVIGKYHPHGDSAVYDTIVRMAQDFSLRHMLVDGQGNFGSVDGDSAAAMRYTEIRLSKI 130 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A +L +D++ VD+ Y+ + EP+V P++ PNLL NG+SGIAVGMAT+IP HN+ E+ Sbjct: 131 AHEMLGDIDKETVDYGPNYDGSEREPLVLPARLPNLLVNGSSGIAVGMATNIPPHNLNEV 190 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 +A L L+ P+ +I++L+E I PDFPT GII + E YR GRG +RA+ E Sbjct: 191 VDACLHLLQTPQATIDELMEIIPAPDFPTAGIIY-GINGVKEGYRTGRGRVVMRAKCHFE 249 Query: 260 EVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318 ++ RG I+V E+PYQV K L E++AEL+ K+I + I+DES + ++ R Sbjct: 250 DIDRGQRQAIIVDELPYQVNKKTLQERMAELVHEKKIEGISHIQDESDKSGMRLVIELKR 309 Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378 P++++ +++ L+ ++ F +NM L G+ P++ L +++ +L HRREV+ RR+ + Sbjct: 310 GEVPEVVLNNLYKLTQLQDTFGMNMVALVDGQ-PKLCNLKDLVEVFLQHRREVVTRRTVY 368 Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV-----------------MVSR- 420 ++ R +L+GL +A NID+ IAIIRN P PV M++R Sbjct: 369 ELRKARERGHVLEGLAVALANIDDFIAIIRNAPTP-PVAKAELMTRNWDSKLVREMLTRT 427 Query: 421 ----------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELD 452 + L+E Q IL +RL+ L LE+ +I +E Sbjct: 428 RTDGGVVNADDYRPDGLEREFGMQADGLYRLSETQAQEILQMRLQRLTGLEQDKIVAEYK 487 Query: 453 NLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ 512 ++++ E + +L+ ++ I E++++K F +S +G RR+T E S D +T + Sbjct: 488 DVMSVIEDLLDILSKPERVSAIIGDELKQIKAEFGQSK-VGARRST-VEYSAQDLST--E 543 Query: 513 AMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRIL 564 +I + V +S+ G+I RS K A KE D + A+T D +L Sbjct: 544 DLITPTDMVVTLSHTGYIKSQPLSEYRSQKRGGRGKQATATKEDDWIDQLFIANTHDYLL 603 Query: 565 LLSTDGKAYTL-----PAGN 579 S G+ Y L PAG+ Sbjct: 604 CFSNRGRLYWLKVWEVPAGS 623 >gi|300704758|ref|YP_003746361.1| DNA gyrase subunit A [Ralstonia solanacearum CFBP2957] gi|299072422|emb|CBJ43767.1| DNA gyrase, subunit A, type II topoisomerase [Ralstonia solanacearum CFBP2957] Length = 885 Score = 389 bits (1000), Expect = e-106, Method: Compositional matrix adjust. Identities = 259/738 (35%), Positives = 396/738 (53%), Gaps = 74/738 (10%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 VSL + YLAYA+S I RA+PD+RDG KPVHRR+++AM E+ D+ +KKSARIV Sbjct: 11 VSLEEEMRSSYLAYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNRPYKKSARIV 70 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGD +VYD++VR+AQ F RY L+ GQGNFG++DGD+AAA RYTE R++++ Sbjct: 71 GDVIGKYHPHGDSAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRLSKI 130 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A +L +D++ VDF Y+ ++EP + P++ PNLL NG+SGIAVGMAT+IP HN++E+ Sbjct: 131 AHELLADIDKETVDFEPNYDGSETEPSILPARIPNLLINGSSGIAVGMATNIPPHNLREV 190 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 + L L+ NPE ++++L+E I PDFPT GII + E YR GRG +RA+ E Sbjct: 191 VDGCLHLLRNPEATVDELIELIPAPDFPTAGIIY-GISGVREGYRTGRGRVVMRAKTHFE 249 Query: 260 EVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318 ++ RG I+V E+PYQV K L+E+IAEL+ KR+ + DIRDES + V+ R Sbjct: 250 DIDRGQRQAIIVDELPYQVNKRTLLERIAELVTEKRVEGISDIRDESDKSGMRVVIELKR 309 Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378 P++++ +++ + ++ F +NM L G+ P+++ L +L+ +L HRREV+ RR+ F Sbjct: 310 GEVPEVVLNNLYKNTQLQDTFGMNMVALVDGQ-PRLLNLRQMLECFLLHRREVVTRRTVF 368 Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV-----------------MVSR- 420 ++ R IL+GL +A NIDE IAII+ P P+ M+SR Sbjct: 369 DLRKARERGHILEGLAVALANIDEFIAIIKAAPTP-PIAKQELMGRSWDSGLVRDMLSRA 427 Query: 421 ---------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453 + L++ Q IL +RL+ L LE+ +I E Sbjct: 428 ESDTVGGRTAYRPEGLLPVFGMQGDGLYKLSDTQAQEILQMRLQRLTGLEQDKIVQEYRE 487 Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513 ++A+ I LL+ + A + E+ I S + G R + E + + T + Sbjct: 488 VMAQ---IADLLDILARPERITAIIVEELTLIRS---EFGDERRSQIEHNATELDT--ED 539 Query: 514 MIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565 +I + + V +S+ G++ R+ K A KE D + A+T D IL Sbjct: 540 LITPQDLVVTLSHSGYMKSQPISEYRAQKRGGRGKQAAATKEDDWIDTLFVANTHDYILC 599 Query: 566 LSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQD---IVTAFVYDSTCKLLVVSSK 620 S G+ Y L + G G I + L+ + I+ +D + + +SK Sbjct: 600 FSNRGRLYWLKVWEVPQGSRNSRGRPIVNMFPLSPGEKINVILPVKQFDEQHFVFMATSK 659 Query: 621 GNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT-GDH-VAVVGENRKLLIFSIDQI 678 G +E +N RK E + +T G H V + + K + F + + Sbjct: 660 GTVKKTALTE-FSNPRKAGIIAVDLDEGDFLIGADITDGQHDVMLFSDAGKAVRFDENDV 718 Query: 679 PEMSR-GKGVRLQSYKDG 695 M R +GVR + +DG Sbjct: 719 RPMGRQARGVRGMNLEDG 736 >gi|255526780|ref|ZP_05393680.1| DNA topoisomerase (ATP-hydrolyzing) [Clostridium carboxidivorans P7] gi|296187930|ref|ZP_06856322.1| DNA gyrase/topoisomerase IV, A subunit [Clostridium carboxidivorans P7] gi|255509508|gb|EET85848.1| DNA topoisomerase (ATP-hydrolyzing) [Clostridium carboxidivorans P7] gi|296047056|gb|EFG86498.1| DNA gyrase/topoisomerase IV, A subunit [Clostridium carboxidivorans P7] Length = 959 Score = 389 bits (1000), Expect = e-106, Method: Compositional matrix adjust. Identities = 231/616 (37%), Positives = 367/616 (59%), Gaps = 27/616 (4%) Query: 13 VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72 V+ N+ VS+ A+ E YL YA+ K+RA+PD+RDG KPVHRRI++ + + Sbjct: 9 VDNNIIKVSIEEAMPENYLPYAVEVAKDRALPDVRDGLKPVHRRILYGSYMLKAFPDKPY 68 Query: 73 KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132 KSARIVG+++GK HPHGD SVYD++V LAQ F R PLI G GN+G+ DGD+AAA RYT Sbjct: 69 YKSARIVGDILGKYHPHGDTSVYDAMVILAQNFTTRKPLIDGHGNWGSQDGDNAAAMRYT 128 Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192 EAR+T +A +++ +D+ VD D Y+ + EP V P+K+PNLL NG GIAVG+AT+IP Sbjct: 129 EARLTPIAMELIRDIDKGVVDMVDNYSASEKEPEVLPAKYPNLLVNGAFGIAVGLATNIP 188 Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252 HN++E+ +A +A ID +I ++L+EYI GPD PTGGII+ ++S++ +Y G G + Sbjct: 189 PHNLKEVIDATIAYIDKSDIDTKELMEYIKGPDLPTGGIII-GKKSLLSAYETGEGRVTL 247 Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELII----AKRIPLLEDIRDESAED 308 RA+ +E + G IV+TE PY+ K++L++ I+E+ AK + + DIRDES Sbjct: 248 RAKTSIERLESGRLGIVITEFPYRRSKAKLLQTISEMTADKKHAKALESISDIRDESDRT 307 Query: 309 -VRIVLFPKNRSLDP--DLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365 VR V+ K S + D +++ +F +DM+ NM L+ G+ PQ M L IL ++ Sbjct: 308 GVRAVIEFKKSSDEETVDKVLKYLFKRTDMQCNISFNMVALAKGK-PQTMGLKTILYHYI 366 Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFS 422 H+++V+ RR+ M+ +R I++G + A +DEII +IR+ K ++ F Sbjct: 367 EHQKDVVRRRTEREMEIASKRFHIVEGFIKAIGIMDEIIKVIRSSKSKKDAGKNLIEGFG 426 Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482 TE Q +AIL L L L LE + E L E ++++ +L+S K+ I E+ E+ Sbjct: 427 FTEVQSEAILELMLYRLTGLEIVAFEKEHKELEKEIKRLNKILSSEKELLKIIKKELTEI 486 Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSH---S 537 +E + + R+TT E K L++ ++E E I + +SN G+I+ LK++ + Sbjct: 487 REKYGDN-----RKTTIVENDDEAKINLEELIVE-EDIVITMSNEGFIKRIPLKTYNRIN 540 Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLID 595 ++ + ++EGD K ++++T ++ + G Y N+ + GE I+ +I Sbjct: 541 AEVGDIEYREGDFNKFLINSNTKSTLMFFTDKGNMYQSKGINIPEFKWKDKGERIESIIK 600 Query: 596 -LNHNQDIVTAFVYDS 610 L+ +Q+ + A VY + Sbjct: 601 TLDVSQESIVA-VYSA 615 >gi|297200946|ref|ZP_06918343.1| DNA gyrase, A subunit [Streptomyces sviceus ATCC 29083] gi|297147776|gb|EDY60917.2| DNA gyrase, A subunit [Streptomyces sviceus ATCC 29083] Length = 865 Score = 389 bits (1000), Expect = e-106, Method: Compositional matrix adjust. Identities = 232/634 (36%), Positives = 361/634 (56%), Gaps = 38/634 (5%) Query: 12 LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71 ++ + V+ V L ++ YL YA+S I RA+PD+RDG KPVHRR+++AM + G Sbjct: 15 IIAQRVEPVGLETEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMYDGGYRPERG 74 Query: 72 FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131 F K AR+VG+V+G HPHGD S+YD+LVRLAQP+ R PL+ GNFG+ D AAA RY Sbjct: 75 FYKCARVVGDVMGNYHPHGDSSIYDALVRLAQPWSMRMPLVDSNGNFGSPGNDPAAAMRY 134 Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191 TE +M ++ +++ +DE+ VDF D Y+ EP V P++FPNLL NG++GIAVGMAT+I Sbjct: 135 TECKMAPLSMEMVRDIDEETVDFTDNYDGRSQEPTVLPARFPNLLINGSAGIAVGMATNI 194 Query: 192 PSHNVQEICEAALALIDNPEISIEKLL----EYIIGPDFPTGGIIVESRESIVESYRLGR 247 P HN++E+ A ++NPE S E+LL E I GPDFPTG ++V R+ I E+YR GR Sbjct: 195 PPHNLREVAAGAQWYLENPEASHEELLDALMERIKGPDFPTGALVV-GRKGIEEAYRTGR 253 Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307 G +RA VEE+ + C+VVTE+PYQ L +KIA+L+ ++ + D+RDE++ Sbjct: 254 GSITMRAVVEVEEI-QNRQCLVVTELPYQTNPDNLAQKIADLVKDGKVGGIADVRDETSS 312 Query: 308 DV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365 R+V+ K R +++ +++ +D+++ F NM L G VP+ + LD ++ W+ Sbjct: 313 RTGQRLVIVLK-RDAVAKVVLNNLYKHTDLQSNFGANMLALVDG-VPRTLSLDAFIRHWV 370 Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFS 422 AH+ EV+ RR+ FR++ + R IL+GLL A IDE+IA+IR D + ++ Sbjct: 371 AHQIEVIVRRTKFRLRKAEERAHILRGLLKALDAIDEVIALIRRSDTVDIARTGLMELLE 430 Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482 + E Q +AIL ++LR L LE +I E D L A+ + + +L S +Q ++ E+ + Sbjct: 431 IDEIQANAILEMQLRRLAALERQKIVQEHDELQAKITEYNEILASPVRQRGIVSAELAAI 490 Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542 E + G R T D + + +I +E I V +S G+++ ++ +VD A Sbjct: 491 VEKY------GDDRKTMLVPYDGDMSI--EDLIAEEDIVVTVSRGGYVK--RTKAVDYRA 540 Query: 543 ----------LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEAI 590 KE D + + T +L + G+ Y A L +GR G+ + Sbjct: 541 QKRGGKGVRGTKLKEDDIVDHFFVSTTHHWLLFFTNKGRVYRAKAYELPDAGRDARGQHV 600 Query: 591 QLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKG 621 L+ ++ I YD+ L++ + G Sbjct: 601 ANLLAFQPDEAIAEILAIRDYDAAPYLVLATKAG 634 >gi|312874805|ref|ZP_07734824.1| DNA gyrase, A subunit [Lactobacillus iners LEAF 2053A-b] gi|311089550|gb|EFQ47975.1| DNA gyrase, A subunit [Lactobacillus iners LEAF 2053A-b] Length = 815 Score = 389 bits (1000), Expect = e-106, Method: Compositional matrix adjust. Identities = 233/704 (33%), Positives = 394/704 (55%), Gaps = 49/704 (6%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 + ++ V L + +L YA+S I RA+PD+RDG KPV RRI++ M+E+G+ +K Sbjct: 7 DHRIRNVDLTKTMRSSFLDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVFPDKPYK 66 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSARIVGEV+GK HPHGD S+Y+++ +AQ F RY L+ G GNFG+IDGD AA RYTE Sbjct: 67 KSARIVGEVMGKFHPHGDSSIYEAMAHMAQDFSYRYMLVDGHGNFGSIDGDRPAAMRYTE 126 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 ARM+++A +L+ +++D +D++ Y++ ++EPVV P++ P LL NG SGIAVGM T+IP Sbjct: 127 ARMSKIAMEMLRDINKDTIDWQRNYDDNENEPVVLPARVPALLVNGVSGIAVGMTTNIPP 186 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ EI L++NP++S+ +L+ I GPDFPTGGII+ R I+ +Y+ G+G VR Sbjct: 187 HNLSEIISGLHMLMENPDVSVRELMTAITGPDFPTGGIIM-GRSGILRAYKTGKGNIVVR 245 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313 A+ ++ G I+++EIPY V K+ L++KIA+L K + + I+DES + + Sbjct: 246 AKTNIDTEKSGRERIIISEIPYMVNKAELVKKIADLARDKVVDGITGIQDESDQKGLRIT 305 Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373 R +++ ++F + +++ F +NM + G P V+ L IL+ +LAH+ ++ Sbjct: 306 IDIRRDASASVVLNNLFKQTQLQSNFGVNMVAIVDGS-PHVLNLKQILQYYLAHQENIIT 364 Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDA 430 RR+ + ++ + R I++GL IA +IDEII IIR N D K +++RF L + Q A Sbjct: 365 RRTKYDLKKAEARAHIIEGLRIALDHIDEIIKIIRGSKNSDIAKEQLITRFGLDDRQAQA 424 Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490 IL++RL L LE +++ E +LL + + +L ++ I E+ ++++ F Sbjct: 425 ILDMRLVRLTGLERDKLEEEYRDLLEKIDDYKDILAKPERVDQIIFNELLDIQKRFGDE- 483 Query: 491 DLGRRRTTFCEVSRADKATL-QQAMIEKEPITVVISNRGWIRSLKSHSVDLS-------- 541 RRT E+S ++ ++ + +IEK+ + + +++ G+I+ + + + Sbjct: 484 ----RRT---EISDSEIISIDDEDLIEKQNVLLTLTHNGYIKRMPADEFKVQNRGGRGIR 536 Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLLSGRGH 586 + + D + ++ +T D +L + GK Y+ LP NL+ Sbjct: 537 GMGVQNDDFINHLIYVNTHDYLLFFTNKGKVYSKKSYEIPEYGRAAKGLPIINLVQLE-K 595 Query: 587 GEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS 646 GE +Q ++ + N D+ L+ V+ G + SE R G L + Sbjct: 596 GEKVQAVVKIATN---------DTNKYLMFVTKYGIVKRISISEFTNIRRSGLIALNLRE 646 Query: 647 EEKMKLVVKVTGDHVAVVGENRKL-LIFSIDQIPEMSR-GKGVR 688 +++ V+ G ++G +IF+ +++ M R GVR Sbjct: 647 NDELSNVLLTDGSQNILIGTRLGYAVIFNENEVRTMGRVASGVR 690 >gi|21672462|ref|NP_660529.1| DNA gyrase subunit A [Buchnera aphidicola str. Sg (Schizaphis graminum)] gi|25008529|sp|Q8K9W2|GYRA_BUCAP RecName: Full=DNA gyrase subunit A gi|21623077|gb|AAM67740.1| DNA gyrase subunit A [Buchnera aphidicola str. Sg (Schizaphis graminum)] Length = 825 Score = 389 bits (1000), Expect = e-106, Method: Compositional matrix adjust. Identities = 242/622 (38%), Positives = 366/622 (58%), Gaps = 49/622 (7%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 V + L+ YL YA+S I RA+PD+RDG KPVHRRI+ AM + + A+KKSAR+V Sbjct: 11 VDIEKELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRILFAMHVLSNYWNKAYKKSARVV 70 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGD +VYDS+VR+AQ F RY LI GQGNFG+IDGD+AAA RYTE RM+++ Sbjct: 71 GDVIGKYHPHGDSAVYDSIVRMAQNFSLRYMLIDGQGNFGSIDGDAAAAMRYTEVRMSKI 130 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 ++ +L ++++ V+F Y+ + P + PSK PNLL NG+SGIAVGMAT+IP HN+ E+ Sbjct: 131 SQELLADLEKNTVEFIPNYDGTEHIPEILPSKIPNLLINGSSGIAVGMATNIPPHNLNEV 190 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR-WCV 258 + LA I + I++ +L+++I GPDFPT GII ++ I E+YR G+G +RAR Sbjct: 191 IDGCLAYIKDDNITLRELIQHIPGPDFPTAGII-NGKKGIEEAYRTGKGKIYIRARNKIE 249 Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKN 317 + I+ EIPYQV KSRLIEKIAEL+ KRI + +RDES +D +RIV+ K Sbjct: 250 KNKKNKKESIIFYEIPYQVNKSRLIEKIAELVKEKRIDGITALRDESDKDGMRIVVEIKK 309 Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377 ++ ++++ ++ L+ ++ F +NM L G+ P+ + L ILK +L+HR E++ RRS Sbjct: 310 EAMS-EIILNQLYSLTQLQISFGINMVALCQGQ-PKTLSLKEILKHFLSHREEIVTRRSI 367 Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSR-------------- 420 F + +R IL+GL IA +NI+ II +I+ + K +++ + Sbjct: 368 FELDKTCKRSHILEGLSIALININCIIDLIKKAKSSLEAKELIIKKTWIYKNSEKINQKD 427 Query: 421 --FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE 478 + TE QV AIL+LRL L LE+ ++ E D L + +++ +L S + I E Sbjct: 428 HDYHFTEEQVQAILDLRLHKLTSLEKNKLVLEYDCLTKKIKELKKILKSRDRMREVIRDE 487 Query: 479 IREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR------- 531 + +K F +RRT E++ + + +I +E + V +S+ G+++ Sbjct: 488 LVSIKNNFG-----DQRRT---EITENNPDISIEDLINQEDVVVTLSHSGYVKYQPLSDY 539 Query: 532 -SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRG 585 + K SA KE D ++ + +T D IL S+ G K Y LP S Sbjct: 540 NAQKRGGKGKSAAKIKEEDFIESLVVTNTHDTILCFSSRGILYWMKVYQLPES---SRHA 596 Query: 586 HGEAIQLLIDLNHNQDIVTAFV 607 G I L+ L+ N++ +TA + Sbjct: 597 KGRPIVNLLPLS-NKERITAIL 617 >gi|159030329|emb|CAO91224.1| gyrA [Microcystis aeruginosa PCC 7806] Length = 850 Score = 389 bits (1000), Expect = e-106, Method: Compositional matrix adjust. Identities = 252/723 (34%), Positives = 402/723 (55%), Gaps = 61/723 (8%) Query: 11 TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70 T +++V L + YL YA+S I RA+PD RDG KPVHRRI++AM E+GL Sbjct: 2 TAAQDHVVPTDLSNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTPDR 61 Query: 71 AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130 F+K AR+VGEV+GK HPHGD +VYD+LVR+AQ F R PLI+G GNFG+ID D AA R Sbjct: 62 PFRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRDPLINGHGNFGSIDNDPPAAMR 121 Query: 131 YTEARMTQVA-ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189 YTE R+ +A +LQ ++ + VDF D ++ EPVV PS+ P LL NG+SGIAVGMAT Sbjct: 122 YTECRLHTLATNALLQDIESETVDFADNFDGSQQEPVVLPSRVPQLLINGSSGIAVGMAT 181 Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249 +IP HN+ EI + +ALI NP+++ +L YI GPDFPTGG I+ R+ I E+Y GRG Sbjct: 182 NIPPHNLAEIIDGTVALIHNPDLTDTELQRYIPGPDFPTGGHIL-GRDGIQEAYTTGRGS 240 Query: 250 FRVRARWCVEEV---GRGSW-CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305 +R +E + GR I++TE+PYQ K+ LIEKIA+L+ ++I + D+RDES Sbjct: 241 ITLRGVATIETIEQRGRPDRDAIIITELPYQTNKAALIEKIADLVNDRKIDGISDVRDES 300 Query: 306 AED-VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364 D +R+V+ K R P +++ +++ + +++ F NM L + P+++ L L+ + Sbjct: 301 DRDGIRVVIELK-RDAYPRVVLNNLYKQTPLQSNFGANMLAL-VDNEPRLLTLREFLRVF 358 Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRF 421 L R EV+ RR+ + ++ + R +L+GLLIA ++D +IA+IR + K +V F Sbjct: 359 LDFRVEVITRRTRYELRKAEERDHLLQGLLIALASLDAVIALIRSAADTASAKEGLVQNF 418 Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSE----------LDNLLAEKEKIDSLLNSGKQQ 471 L+E Q DAIL ++LR L LE +I+ E L ++LA+KE+IDS++ QQ Sbjct: 419 GLSEVQADAILQMQLRRLTALESEKIQQEHGELLTKIGDLQDILAKKERIDSIIEEELQQ 478 Query: 472 WNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR 531 I R + + +R E++ D +QA+I +++ +G+I+ Sbjct: 479 IKTIHATPRR--------SHIEQRE---GEIAETDLIANEQALI-------LVTEQGYIK 520 Query: 532 SLKSHSVD--------LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG 583 + ++ + + KE D + + D +L + G Y+L A ++ +G Sbjct: 521 RMPVNTFESQNRATRGKAGAKMKEDDGIDHFITCRDHDSVLFFTDRGVVYSLNAYHIPTG 580 Query: 584 R--GHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKG 638 G I L+++ + I + + L++++ KG FI + + + + Sbjct: 581 SRTARGVPIVQLLEIPKGEKITSVVAVSEFSEDNYLIMLTQKG--FIKKTALAAFSNIRS 638 Query: 639 KTFLKVSSE--EKMKLVVKVTGDHVAVVGENRKLLI-FSID--QIPEMSRG-KGVRLQSY 692 + +S E ++++ V + ++G + + I F D Q+ + R KGV+ Sbjct: 639 NGLIAISLEDGDQLRWVRLAKEEDSVIIGSRQGMAIHFKADSQQLRSLGRATKGVKSMKL 698 Query: 693 KDG 695 + G Sbjct: 699 RSG 701 >gi|325989384|ref|YP_004249083.1| Topoisomerase II subunit A [Mycoplasma suis KI3806] gi|323574469|emb|CBZ40119.1| Topoisomerase II subunit A [Mycoplasma suis] Length = 894 Score = 389 bits (999), Expect = e-106, Method: Compositional matrix adjust. Identities = 244/732 (33%), Positives = 403/732 (55%), Gaps = 76/732 (10%) Query: 12 LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71 L NV+ + +E +L Y+LS I RA+PDL+DG KPVHRRI++A E L + Sbjct: 17 LPSSNVENKDISVVCDESFLNYSLSVITSRALPDLKDGLKPVHRRILYAAYEEKLFNDSR 76 Query: 72 FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131 FKKSA +VG V+G HPHGD+S+YD+LVRL+Q F RYPL+ GQGNFG+IDGD AA RY Sbjct: 77 FKKSATLVGAVMGSYHPHGDKSIYDALVRLSQDFKMRYPLLEGQGNFGSIDGDVPAAMRY 136 Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191 TE ++++ E L G+ E+ VDF D Y+ EP + P P++L NG+ GIAVGMAT I Sbjct: 137 TEIKLSKFGEKFLSGIKEECVDFVDNYDGSKQEPSILPVIVPSILLNGSEGIAVGMATKI 196 Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251 P HN++E+C+A +ALIDNPE+ E+ +EYI GPDFPTGG I+ ES+ + G G Sbjct: 197 PPHNLREVCDAIIALIDNPELQDEQFIEYIKGPDFPTGGEII-GIESVKRYHSKGLGKII 255 Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELII------AKRIP-----LLED 300 +R++ E+ +++ EIP+ ++K+ LI+KIA+L A+R L++ Sbjct: 256 LRSKV---EIDANKHQLIIKEIPFGIKKADLIKKIADLAYEGKNAKARRTNEILQRFLQN 312 Query: 301 IRDES--AEDVRIVLFPKNRSLDPDL--LMESIFMLSDMETRFPLNMNVLSMGRVPQVMP 356 IRDES E +R+++ K S + DL ++ +++ + ++ F +N+ +L G+ PQ++ Sbjct: 313 IRDESNLKEGIRLIIECKKGSKESDLKAVLNNLYKYARLQVTFAVNLTLLVDGK-PQLLG 371 Query: 357 LDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV 416 + I++ +L H+ ++L R++ F ++ + RR+ +L+G N+DE+I II +ED P+ + Sbjct: 372 IGAIIRNYLQHQLDMLQRKTKFNLREVQRRIHLLEGRETVVRNLDEVIRIITDEDNPEVI 431 Query: 417 MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476 + ++SLT Q+ I +L LR L+K+E ++ +ELD A++++ +LL+ +Q+ I Sbjct: 432 IQEKYSLTPVQIKDIFDLPLRQLKKIEFLKLTNELDQKRAKRDEYQALLDDKNKQYENIK 491 Query: 477 CEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSH 536 E+ E+K F DL + T +++ K I KE I + ++ +I ++ Sbjct: 492 KELIEIKNEF--KNDLRKTLITPKGIAKITKWD----CIPKEDIILKVTQNNYIAAIPLD 545 Query: 537 SVDL---------SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPA---------- 577 +DL S+ FK GD L + + D + + + + + L A Sbjct: 546 KIDLTHRNTVGENSSSEFKTGDLDVDLLLSSSHDDLFIFTNYARVFKLKAHEIKISANKK 605 Query: 578 --------GNLLSGRGHGEAIQLLIDLNHNQ----------DIVTAFVYDSTCKLLVVSS 619 NL+ G E +I L+ + D++ A + K+ Sbjct: 606 WSKKPQKLNNLIPLMGKDEKAVKIISLSREEQNNEEKWKDIDLLFATKFGFIRKISFYK- 664 Query: 620 KGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIP 679 F +E+ + GKT +++S +++K V+K+ D ++ ++ +I I Sbjct: 665 ----FFLEKK-----WKSGKTAMRLSENDQLKFVIKMHKDSEILLASSKNKVIRFKSSIL 715 Query: 680 EMSRGK---GVR 688 E R + GVR Sbjct: 716 EAKRTRKTFGVR 727 >gi|327401213|ref|YP_004342052.1| DNA gyrase subunit A [Archaeoglobus veneficus SNP6] gi|327316721|gb|AEA47337.1| DNA gyrase, A subunit [Archaeoglobus veneficus SNP6] Length = 776 Score = 389 bits (999), Expect = e-106, Method: Compositional matrix adjust. Identities = 244/699 (34%), Positives = 400/699 (57%), Gaps = 48/699 (6%) Query: 26 LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85 L+ Y+ YA+S I RA+PD+RDG KPV RRI++AM EMG+ ++K ARIVG+V+GK Sbjct: 11 LKSSYIDYAMSVIVGRALPDVRDGLKPVQRRILYAMYEMGITSTKPYRKCARIVGDVLGK 70 Query: 86 LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145 HPHGD +VYD+LVR+AQ F RYPLI GQGNFG+IDGD AA RYTEAR+ ++AE +L Sbjct: 71 YHPHGDAAVYDALVRMAQDFAMRYPLIDGQGNFGSIDGDMPAAMRYTEARLAKIAEEMLS 130 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 +D+D VDF ++ EP V P+K PNLL NG SGIAVGMAT++P HN++E+C+A +A Sbjct: 131 DIDKDTVDFVPNFDATLKEPSVLPAKIPNLLINGCSGIAVGMATNMPPHNLREVCDAIIA 190 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265 + NP+I++ +L++Y+ PDFPTGG+IV R+ ++++Y G+G VR R +E + Sbjct: 191 YLQNPDITVRELMKYVKAPDFPTGGVIV-GRKGLIDAYETGKGKITVRGRVEIE-----N 244 Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFPKNRSLDPDL 324 I++ EIPY V K+RL+EKIAELI + ++ + +RDES E +RIV+ + D + Sbjct: 245 NTIIIREIPYMVNKARLVEKIAELINSGKLE-AKTVRDESDREGIRIVVEVRE---DINT 300 Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384 ++ ++ ++++T F + +N+ + P+++ L +++ ++ HRR V+ RR+ + ++ Sbjct: 301 ALKKLYAYTNLQTTFGI-INLALVDNEPRILSLKELIECYVEHRRVVVRRRTQYELKKAK 359 Query: 385 RRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVDAILNLRLRSLRK 441 R+ I++GL A +ID +I +I++ P K ++ R+ L+E Q DAIL RL+ L Sbjct: 360 ERLHIVEGLKKAIEDIDNVIQLIKSSSSPSEAKTALMERYELSEVQADAILQTRLQKLTA 419 Query: 442 LEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCE 501 +E + E + L+ + ++ + +L S ++ IA E+ E+KE + RRT E Sbjct: 420 MEIDALMKEYEELIQKIKEYEEILASPQRIDAIIASELEEIKEKYGDE-----RRT---E 471 Query: 502 VSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH----------FKEGDSL 551 + D + ++ E ++++ G+++ + S+ H + D Sbjct: 472 IVEEDGEISAEELVSFEENILIVTKNGFVKRM---SIGFKTQHRGGVGVIGIGMRGDDEP 528 Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAFVYD 609 I + ++ D++L+ T KAY L A + G G I++ + + + IV + Sbjct: 529 AIIVKCNSRDKLLVF-TASKAYWLNAYEIPKQERTGKGVNIRMYLSIPEGERIVAIVPFQ 587 Query: 610 S-TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENR 668 + +L+++ G SE R G V+S K+ + G V + N Sbjct: 588 NFEGDILILTEDGYIKRTPLSEFENAKRAG----IVASGGKIAFARHLDGKEVFIATTNG 643 Query: 669 KLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKIC 706 + F + +PE R KGV+ S + G D I + C Sbjct: 644 YAVRFKAEDVPEYGRSAKGVKAISLRQG---DSIAWLSC 679 >gi|307103217|gb|EFN51479.1| hypothetical protein CHLNCDRAFT_56398 [Chlorella variabilis] Length = 950 Score = 389 bits (999), Expect = e-106, Method: Compositional matrix adjust. Identities = 230/641 (35%), Positives = 355/641 (55%), Gaps = 41/641 (6%) Query: 22 LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81 LR E YL+YA+S I RA+PD+RDG KPVHRRI++AM E+GL F+K AR+VGE Sbjct: 86 LRLEAERSYLSYAMSVIVGRALPDVRDGLKPVHRRILYAMHELGLQHNKPFRKCARVVGE 145 Query: 82 VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE 141 V+GK HPHGD +VYD+LVRLAQ F R L+ G GNFG++D D AA RYTE R+ VA Sbjct: 146 VLGKFHPHGDTAVYDALVRLAQDFSMRVQLVDGHGNFGSLDDDPPAAMRYTECRLQAVAS 205 Query: 142 -LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200 ++L ++ D VDF ++ EP V P++ PNLL NGTSGIAVG+AT IP HN++E+ Sbjct: 206 AMLLADLEADTVDFMPNFDASVDEPSVLPARVPNLLINGTSGIAVGIATKIPPHNMREVV 265 Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESR----ESIVESYRLGRGGFRVRARW 256 E ALI NP+I++ +L+ +I PDFPTG + +++ ++Y G+GG +RA+ Sbjct: 266 EGLKALIHNPDITVRQLMRHIPAPDFPTGALAARGEIILTDAVRQAYEEGKGGILMRAKI 325 Query: 257 CVEE---VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIV 312 +E+ G G +V+TE+PYQ KS L+E+IA L+ A + + DIRDES D VR+V Sbjct: 326 HIEDGSSSGSGKPLVVITELPYQTNKSALVEQIARLVDAGTLTGVSDIRDESDRDGVRVV 385 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 + K R + DL++ + + +++RF NM L +G P + L L+ +L+ R EV+ Sbjct: 386 VEVK-RGGNADLVLNQLLKHTAVQSRFSANMVAL-VGATPLTLTLKNFLQHFLSFRCEVV 443 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV----SRFSLTENQV 428 RR+ + +R+ ++ G + A ++D ++ IR +V S F L+ Q Sbjct: 444 ERRARHDLLRAQQRLHLVDGFVTAMRDLDAVVHAIRQASDGAAALVVLRASPFGLSREQA 503 Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488 + +L + LR L LE +++ E L A+ + LL + + E E+ F Sbjct: 504 EGVLGMTLRRLTSLEASKLQEEQAQLQAKIADLQDLLQRQDRILQVVTSEAEELAAKFGT 563 Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHS--------VDL 540 RRT ++ + + +I P VV S RG+I+ ++ + V Sbjct: 564 P-----RRTHI--ITDGEVELRHEDVIPNAPSLVVYSRRGYIKRVRPDTFGAQKRGGVGK 616 Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNH 598 + KE DSL ++ + D +L +T+G+AY+L A ++ G G A+ ++ + Sbjct: 617 AGARLKEDDSLDEVVYVNDHDHLLFFTTEGRAYSLRAYDVPEGTRTAVGSAVTQVLPFDK 676 Query: 599 NQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGK 639 + I ++ VS G A E +++ TRKG+ Sbjct: 677 STRI---------AAMVPVSGFGAALGSAEQDVVMLTRKGQ 708 >gi|295108650|emb|CBL22603.1| DNA gyrase subunit A [Ruminococcus obeum A2-162] Length = 851 Score = 389 bits (999), Expect = e-106, Method: Compositional matrix adjust. Identities = 243/678 (35%), Positives = 390/678 (57%), Gaps = 42/678 (6%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 + + V L+ +E+ Y+ YA+S I RA+PD+RDG KPV RR++++M E+ +K Sbjct: 7 DKIHEVDLQKTMEKSYIDYAMSVIASRALPDVRDGLKPVQRRVLYSMIELNNGPDKPHRK 66 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 ARIVG+ +GK HPHGD S+Y +LV +AQ + RYPL+ G GNFG++DGD AAA RYTEA Sbjct: 67 CARIVGDTMGKYHPHGDSSIYGALVNMAQDWSTRYPLVDGHGNFGSVDGDGAAAMRYTEA 126 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 R+++++ +L +++D VDF+ ++E + EPVV P+++PNLL NGTSGIAVGMAT+IP H Sbjct: 127 RLSKISMEMLADINKDTVDFQPNFDETEREPVVLPARYPNLLVNGTSGIAVGMATNIPPH 186 Query: 195 NVQEICEAALALIDN-----PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249 N++E+ A + +IDN + +IE+LLE + GPDFPTG I+ +R I E+YR GRG Sbjct: 187 NLREVIGAVVKIIDNIIEEDRDTTIEELLEIVKGPDFPTGATILGTR-GIEEAYRTGRGK 245 Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309 RVRA +E + G I+VTE+PY V K+RLIEKIAEL+ K+I + D+ D S+ + Sbjct: 246 IRVRAVTNIETLPNGKSRIIVTELPYLVNKARLIEKIAELVREKKIDGITDLNDHSSREG 305 Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL---SMGRVPQVMPLDGILKEWLA 366 + + + ++++ ++ + ++ F + M L + P+V+ L +LK +LA Sbjct: 306 MRICIDLRKDANANVVLNQLYKHTQLQDTFGVIMLCLVAVNGSLQPKVLTLPEMLKYYLA 365 Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSL 423 H+ +V+ RR+ + + R IL+GLL A NIDE+I IIR K ++ RF L Sbjct: 366 HQEDVVTRRTKYDLNKAQERAHILEGLLKALDNIDEVIRIIRGSRSVQVAKQELMDRFEL 425 Query: 424 TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483 T+ Q AI+++RLR+L LE ++++E L+ + K+ ++L N + IRE Sbjct: 426 TDVQAQAIVDMRLRALTGLEREKLEAEYAELMEKIRKLKAIL----ADRNTLLRVIRE-- 479 Query: 484 EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKS 535 EI + S G R T D + + MI +E + ++ G+I RS Sbjct: 480 EILAISEKYGDDRRTAIGFDAYDIS--MEDMIPRENTVITMTKLGYIKRMTVDNFRSQNR 537 Query: 536 HSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEAIQLL 593 + + + D ++ + T ++ + G+ Y L A + +GR G AI L Sbjct: 538 GGRGIKGMQTLDDDYIEELMMTTTHHYVMFFTNTGRVYRLKAYEIPEAGRTARGTAIINL 597 Query: 594 IDLNHNQDIVTAFV----YDSTCKLLVVSSKGNAFIVEESEI--IANTRK-GKTFLKVSS 646 + L + I TA + ++ L++ + KG +V+++ I AN RK G + + Sbjct: 598 LQLMPGERI-TAVIPISKFEEGHYLMMATRKG---LVKKTPIQDYANVRKIGLAAISLRD 653 Query: 647 EEKMKLVVKVTGDHVAVV 664 ++++ + VK T D V+ Sbjct: 654 DDEL-IEVKATNDKKDVI 670 >gi|283797180|ref|ZP_06346333.1| DNA gyrase, A subunit [Clostridium sp. M62/1] gi|291075138|gb|EFE12502.1| DNA gyrase, A subunit [Clostridium sp. M62/1] Length = 855 Score = 389 bits (999), Expect = e-106, Method: Compositional matrix adjust. Identities = 235/630 (37%), Positives = 365/630 (57%), Gaps = 35/630 (5%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 + V + L+ +E+ Y+ YA+S I RA+PD+RDG KPV RR++++M E+ +K Sbjct: 7 DKVHDIDLKKTMEKSYIDYAMSVIAARALPDVRDGLKPVQRRVLYSMIELNNGPDKPHRK 66 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 ARIVG+ +GK HPHGD S+Y +LV +AQ + RY L+ G GNFG++DGD AAA RYTEA Sbjct: 67 CARIVGDTMGKYHPHGDSSIYGALVNMAQKWSTRYMLVDGHGNFGSVDGDGAAAMRYTEA 126 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 R+++++ +L ++++ VDF ++E + EPVV PS+FPNLLANGTSGIAVGMAT+IP H Sbjct: 127 RLSRISMEMLADINKNTVDFVPNFDETEREPVVLPSRFPNLLANGTSGIAVGMATNIPPH 186 Query: 195 NVQEICEAALALIDNP-----EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249 N++E+ A + +IDN + SIE+L+E + GPDFPTG I+ + I E+YR GRG Sbjct: 187 NLRELIAAVVKIIDNQIEEGRDTSIEELMEIVKGPDFPTGATIL-GKAGIEEAYRTGRGK 245 Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309 RVRA +E + G I+VTEIPY V K+RLIEKIAEL+ KR+ + D+RDES + Sbjct: 246 IRVRAVTDIETMPNGKSRIIVTEIPYLVNKARLIEKIAELVKDKRVDGITDLRDESNREG 305 Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369 + R ++ ++++ + + ++ F +NM L + P+V+ L +L +L H++ Sbjct: 306 MRICIELRRDVNANIVLNQLLKHTQLQDTFGVNMLAL-VNNEPKVLNLHQMLTYYLDHQK 364 Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTEN 426 +V+ RR+ + + + R IL+GLL A IDE+I IIR + K ++ RF L++ Sbjct: 365 DVVTRRTKYDLNKAEERAHILEGLLKALDYIDEVIRIIRGSKTVAEAKATLMERFELSDA 424 Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR-EVKEI 485 Q AI+++RLR+L LE + +L N E EK + L N++ I+ E++ I Sbjct: 425 QAQAIVDMRLRALTGLE----REKLLNEYQELEKRIAELRGILADENKLLTVIKEEIQLI 480 Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD------ 539 K D R + + E + + +I E + V I+N G+I+ + S + Sbjct: 481 SDKYGDDRRTKIGYDEFDMS-----AEDLIPDEDVVVAITNLGYIKRMSSDNFKSQNRGG 535 Query: 540 --LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEAIQLLID 595 + + + D ++ L T ++ + G+ Y L A + +GR G AI LI Sbjct: 536 KGIKGMQTIDEDYIEELLMTTTHHYMMFFTNTGRVYRLKAYEIPEAGRTARGTAIVNLIQ 595 Query: 596 LNHNQDIVTAFV----YDSTCKLLVVSSKG 621 L + I TA V +D L + + G Sbjct: 596 LQPGEKI-TATVPMKEFDEDKFLFMATKNG 624 >gi|313122781|ref|YP_004033040.1| DNA gyrase subunit a [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312279344|gb|ADQ60063.1| DNA gyrase subunit A [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 823 Score = 389 bits (999), Expect = e-105, Method: Compositional matrix adjust. Identities = 218/628 (34%), Positives = 369/628 (58%), Gaps = 38/628 (6%) Query: 6 ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65 + N N + ++ V L + +L YA+S I RA+PD+RDG KPV RRI++ M+E+ Sbjct: 1 MDNENQGQDRRIRNVDLTQTMRSSFLDYAMSVIVARALPDVRDGLKPVQRRILYGMNELA 60 Query: 66 LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125 + +KKSARIVG+V+GK HPHGD S+Y ++ +AQ F RY L+ G GNFG++DGD Sbjct: 61 VTPDKPYKKSARIVGDVMGKYHPHGDSSIYLAMAHMAQDFAYRYMLVDGHGNFGSVDGDR 120 Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185 AA RYTEARM+++A +L+ ++++ VD++ Y++ ++EP V P++ PNLL NG+SGIAV Sbjct: 121 PAAMRYTEARMSKIAVEMLRDINKNTVDWQRNYDDTENEPTVLPARIPNLLVNGSSGIAV 180 Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245 GM T+IP HN+ E+ L+ NP+++ ++L++ I GPDFPTGGI++ R ++ +Y Sbjct: 181 GMTTNIPPHNLSEVISGIHMLMKNPDVTNKELMKAIPGPDFPTGGILM-GRGGVLHAYES 239 Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305 G+G VRA+ +E G I+V+EIPY V K+ L++KIAEL K I + +RDES Sbjct: 240 GKGNIVVRAKTEIETEKSGRERIIVSEIPYLVNKAELVQKIAELARDKVIDGITGVRDES 299 Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365 + + R +++ ++F + M++ F +NM + G P+ + L +L+ +L Sbjct: 300 DQSGMRITIDVRRDASASVVLNNLFKETQMQSNFAMNMVAIVDG-APKSLTLKQMLQYYL 358 Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFS 422 AH+ +V+ RR+ F ++ + R IL+GL +A +IDEI+++IRN D K ++SRF Sbjct: 359 AHQEDVITRRTKFDLEKAEARAHILEGLRVALDHIDEIVSLIRNSESSDIAKAGLISRFD 418 Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482 L + Q AIL++RL L LE +++ E LL + +L ++ I E+ ++ Sbjct: 419 LDDRQAQAILDMRLVRLTGLERDKVEGEYQELLVKIADYKDILAKPERIDQIIYDELLDI 478 Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSL-----KSH 536 ++ F +RRT +++ ++ T++ + +IE++ + + +S++G+++ + K+ Sbjct: 479 QKRFGD-----KRRT---QITASEVVTIEDEDLIEEQDVLLTLSHQGYVKRMLIDDFKTQ 530 Query: 537 S---VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAG 578 + + + ++GD ++ L++ T D + + GK Y LP Sbjct: 531 NRGGRGIKGMGVQKGDFIEHLLYSSTHDYLFFYTNKGKVYMKKAYEIPEYGRSAKGLPIV 590 Query: 579 NLLSGRGHGEAIQLLIDLNHNQDIVTAF 606 NLL GE IQ +++L D AF Sbjct: 591 NLLQ-LDKGEHIQTVVNLPQGHDDDYAF 617 >gi|312871293|ref|ZP_07731391.1| DNA gyrase, A subunit [Lactobacillus iners LEAF 3008A-a] gi|311093307|gb|EFQ51653.1| DNA gyrase, A subunit [Lactobacillus iners LEAF 3008A-a] Length = 815 Score = 389 bits (999), Expect = e-105, Method: Compositional matrix adjust. Identities = 233/704 (33%), Positives = 394/704 (55%), Gaps = 49/704 (6%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 + ++ V L + +L YA+S I RA+PD+RDG KPV RRI++ M+E+G+ +K Sbjct: 7 DHRIRNVDLTKTMRSSFLDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVFPDKPYK 66 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSARIVGEV+GK HPHGD S+Y+++ +AQ F RY L+ G GNFG+IDGD AA RYTE Sbjct: 67 KSARIVGEVMGKFHPHGDSSIYEAMAHMAQDFSYRYMLVDGHGNFGSIDGDRPAAMRYTE 126 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 ARM+++A +L+ +++D +D++ Y++ ++EPVV P++ P LL NG SGIAVGM T+IP Sbjct: 127 ARMSKIAMEMLRDINKDTIDWQRNYDDNENEPVVLPARVPALLVNGVSGIAVGMTTNIPP 186 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ EI L++NP++S+ +L+ I GPDFPTGGII+ R I+ +Y+ G+G VR Sbjct: 187 HNLSEIISGLHMLMENPDVSVRELMTAITGPDFPTGGIIM-GRSGILRAYKTGKGNIVVR 245 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313 A+ ++ G I+++EIPY V K+ L++KIA+L K + + I+DES + + Sbjct: 246 AKTNIDTEKSGRERIIISEIPYMVNKAELVKKIADLARDKVVDGITGIQDESDQKGLRIT 305 Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373 R +++ ++F + +++ F +NM + G P V+ L IL+ +LAH+ ++ Sbjct: 306 IDIRRDASASVVLNNLFKQTQLQSNFGVNMVAIVDGS-PHVLNLKQILQYYLAHQENIIT 364 Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDA 430 RR+ + ++ + R I++GL IA +IDEII IIR N D K +++RF L + Q A Sbjct: 365 RRTKYDLKKAEARAHIIEGLRIALDHIDEIIKIIRGSKNSDIAKEQLITRFGLDDRQAQA 424 Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490 IL++RL L LE +++ E +LL + + +L ++ I E+ ++++ F Sbjct: 425 ILDMRLVRLTGLERDKLEEEYRDLLEKIDDYKDILAKPERVDQIIFNELLDIQKRFGDE- 483 Query: 491 DLGRRRTTFCEVSRADKATL-QQAMIEKEPITVVISNRGWIRSLKSHSVDLS-------- 541 RRT E+S ++ ++ + +IEK+ + + +++ G+I+ + + + Sbjct: 484 ----RRT---EISDSEIISIDDEDLIEKQNVLLTLTHNGYIKRMPADEFKVQNRGGRGIR 536 Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLLSGRGH 586 + + D + ++ +T D +L + GK Y+ LP NL+ Sbjct: 537 GMGVQNDDFINHLIYVNTHDYLLFFTNKGKVYSKKSYEIPEYGRAAKGLPIINLVQLE-K 595 Query: 587 GEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS 646 GE +Q ++ + N D+ L+ V+ G + SE R G L + Sbjct: 596 GENVQAVVKIATN---------DTNKYLMFVTKYGIVKRISISEFTNIRRSGLIALNLRE 646 Query: 647 EEKMKLVVKVTGDHVAVVGENRKL-LIFSIDQIPEMSR-GKGVR 688 +++ V+ G ++G +IF+ +++ M R GVR Sbjct: 647 NDELSNVLLTDGSQNILIGTRLGYAVIFNENEVRTMGRVASGVR 690 >gi|209559434|ref|YP_002285906.1| DNA gyrase subunit A [Streptococcus pyogenes NZ131] gi|209540635|gb|ACI61211.1| DNA gyrase subunit A [Streptococcus pyogenes NZ131] Length = 828 Score = 389 bits (999), Expect = e-105, Method: Compositional matrix adjust. Identities = 221/580 (38%), Positives = 353/580 (60%), Gaps = 26/580 (4%) Query: 12 LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71 + + N+ V+L ++ ++ YA+S I RA+PD+RDG KPVHRRI++ M+E+G+ Sbjct: 1 MQDRNLIDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKP 60 Query: 72 FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131 KKSARI G+V+GK HPHGD S+Y+++VR+AQ + R+ L+ G GNF ++DGD AAA RY Sbjct: 61 HKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFCSMDGDGAAAQRY 120 Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191 TEARM+++A +L+ ++++ V+F+D Y+ + EPVV P++FPNLL NG +GIAVGMAT+I Sbjct: 121 TEARMSKIALELLRDINKNTVNFQDNYDGSEREPVVLPARFPNLLVNGATGIAVGMATNI 180 Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251 P HN+ E +A ++++P+ + +L+E I GPDFPTG +++ R I +Y G+G Sbjct: 181 PPHNLAESIDAVKMVMEHPDCTTRELMEVIPGPDFPTGALVM-GRSGIHRAYDTGKGSIV 239 Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVR 310 +R+R +E G IVVTE PY V K+++ E I L KR+ + +RDES+ E VR Sbjct: 240 LRSRTEIETTQTGRERIVVTEFPYGVNKTKVHEHIVRLAQEKRLEGITAVRDESSREGVR 299 Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370 V+ + R +++ ++F L+ ++T F NM + G VP+++ L I+ +++H++E Sbjct: 300 FVIEIR-REASATVILNNLFKLTSLQTNFSFNMLAIENG-VPKILSLRQIIDNYISHQKE 357 Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQ 427 V+ RR+ F + R IL+GLLIA ++DE+IAIIRN + + ++SRF L+E Q Sbjct: 358 VIIRRTRFDKDKAEARAHILEGLLIALDHLDEVIAIIRNSETDVIAQTELMSRFDLSERQ 417 Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487 AIL++RLR L LE +I+SE D+LLA + +L ++ I E+ E+K ++ Sbjct: 418 SQAILDMRLRRLTGLERDKIQSEYDDLLALIADLSDILAKPERIITIIKEEMDEIKRKYA 477 Query: 488 KSTDLGRRRTTFC--EVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHS 537 RRT EV + + +IE+E + + +SN+G+I+ L K Sbjct: 478 NP-----RRTELMVGEVL----SLEDEDLIEEEDVLITLSNKGYIKRLAQDEFRAQKRGG 528 Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPA 577 + D ++ + T D +L + G+ Y L A Sbjct: 529 RGVQGTGVNNDDFVRELVSTSTHDTLLFFTNFGRVYRLKA 568 >gi|183219433|ref|YP_001837429.1| DNA gyrase subunit A [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189909579|ref|YP_001961134.1| DNA gyrase subunit A [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167774255|gb|ABZ92556.1| DNA gyrase subunit A [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167777855|gb|ABZ96153.1| DNA gyrase subunit A [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 843 Score = 389 bits (999), Expect = e-105, Method: Compositional matrix adjust. Identities = 253/752 (33%), Positives = 415/752 (55%), Gaps = 42/752 (5%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 V + ++E YL YA+S I RA+PD+RDG KPVHRR++HAM+E + KSA+IV Sbjct: 38 VEIEDQMKEAYLDYAMSVIVGRALPDVRDGLKPVHRRVLHAMNERAWRSDRPYVKSAKIV 97 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 GEVIG HPHGD +VY+++VR+AQ F R LI GQGNFG++DGD+AAAYRYTEAR+T++ Sbjct: 98 GEVIGNYHPHGDSAVYETMVRMAQTFSMRETLIDGQGNFGSVDGDNAAAYRYTEARLTKL 157 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 AE +L+ ++++ V F +++ +P V P+ FPN+L NG++GIAVGMAT+IP HN++E Sbjct: 158 AEELLKDIEKNTVSFSPNFDDTRQQPDVLPANFPNILVNGSTGIAVGMATNIPPHNLKEA 217 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 A +ALI NP+I++ +L++ + GPDFPT G + E + ++Y G+G R+R++ + Sbjct: 218 VNAVIALIQNPDITLPELMKILPGPDFPT-GGTIIGGEGLYQAYATGKGSIRIRSKVDII 276 Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFPKNR 318 E +G IV+ EIPYQV K ++EKI +L+ K I + +I D S + +R+ + K + Sbjct: 277 ENNKGREIIVIHEIPYQVNKKNMLEKIGDLVNEKIIEGISEILDLSDRKGIRVEIHVK-K 335 Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378 + +++ +F L+ ++ + + M + R P++ L ILK + HRREV+ +R+ F Sbjct: 336 DANAQVILNQLFKLTQLQVSYGITMLAILDNR-PKIFSLKEILKSYAEHRREVVVKRTEF 394 Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAILNLR 435 + +R IL+GL IA NIDE+I IIR + + +++ FSL+E Q DAIL +R Sbjct: 395 DLDKAQKRAHILEGLRIALENIDEVIRIIRASKDVREAQSSLMATFSLSELQADAILEMR 454 Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495 L+ L LE +I EL+ + ++ +L S + I C+ E+ S G Sbjct: 455 LQRLTSLEVQKIIDELEQVRILIADLEDIL-SKPDRVKSIICD-----ELGKVSQSFGNT 508 Query: 496 RTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSL--------KSHSVDLSALHFK 546 RTT + + +T + +I E + V +S +I+ L K + + K Sbjct: 509 RTTEISLESLESSTFNAEDLIADEEVVVQLSEDMFIKRLPMDTFRRQKRGGKGVQGISTK 568 Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVT 604 D +K A T D ++L S G+A+ L L + G++++ +I+LN ++ I + Sbjct: 569 REDFVKKLSSAMTHDNLMLFSNKGRAFLLKVYELPIATKEARGKSLKAVINLNDDEIITS 628 Query: 605 AFVYDS--TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVA 662 F + + LL+V+ +G ++ E + G + + +++ V+ ++ Sbjct: 629 LFTFRNFDESYLLMVTREGFVKKIQLDEFTNTKKSGIIAIGLRDGDELIDVIANPNNYDV 688 Query: 663 VVGENRKLLI-FSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYN 720 +G L I +++++ R GV +D D I G+T ++ + Sbjct: 689 FIGSKNGLAIRMNLNELRSQGRTASGVTAMKLED---DDSIA-----GITKVEPNTNLFC 740 Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752 SEN GKR KG R GK ++ Sbjct: 741 ISEN----GFGKRTDFEEFSTKG--RGGKGMT 766 >gi|28211415|ref|NP_782359.1| DNA topoisomerase IV subunit A [Clostridium tetani E88] gi|28203856|gb|AAO36296.1| DNA gyrase subunit A [Clostridium tetani E88] Length = 959 Score = 389 bits (999), Expect = e-105, Method: Compositional matrix adjust. Identities = 232/631 (36%), Positives = 369/631 (58%), Gaps = 32/631 (5%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 + N+ + + A+ E YL YA K+RA+PD+RDG KPVHRRI++ ++ + Sbjct: 11 DNNIIEMPIEEAMPENYLPYAAEVAKDRALPDVRDGLKPVHRRILYGAYKLAAFPDKPYY 70 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSARIVG+++GK HPHGD SVYD++V LAQ F R PLI G GN+G+IDGDSAAA RYTE Sbjct: 71 KSARIVGDILGKYHPHGDTSVYDAMVILAQDFTTRMPLIDGHGNWGSIDGDSAAAMRYTE 130 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 AR+T +A +L+ +D+D V+ D Y+ + EP V PS++PNLL NG GIAVG+AT+IP Sbjct: 131 ARLTPMALELLRDIDKDVVNMEDNYSSTEKEPEVLPSRYPNLLVNGAFGIAVGLATNIPP 190 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E+ + LA IDN EI ++L++YI GPD PTGGI++ + S++++Y G G +R Sbjct: 191 HNLVEVIDGTLAYIDNNEIDTKELMKYIKGPDLPTGGILI-GKNSLLKAYENGIGKVSLR 249 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR----IPLLEDIRDESAED- 308 A+ +EE+ +G + IV+TE PY+ KS+L++ I+E+ KR + + DIRDES + Sbjct: 250 AKTQIEEIEKGRFGIVITEFPYRKNKSKLLQNISEMTGEKRHSRALEYISDIRDESDRNG 309 Query: 309 VRIVLFPKNRSLDPDLLMESIFML---SDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365 +R V+ K RS D +++ +++ L +DM+ NM L+ G+ P+VM L ++ ++ Sbjct: 310 IRAVIEFK-RSTDREIVEKTLKYLYKNTDMQINISFNMVALANGK-PEVMGLKTMIYHYV 367 Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFS 422 H++EV+ RRS ++ + R I++G + A +DEII IR K ++ +F+ Sbjct: 368 EHQKEVVRRRSEKELEIAENRFHIVEGFIKAIDIMDEIIKTIRASKSKKEASKNLIDKFN 427 Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482 T+ Q +AIL L L L LE K E L + + + +L ++ I E+ EV Sbjct: 428 FTKVQSEAILELMLYRLTGLEVTSFKKEHKELEKKIKALKKILQHEEELLKVIKFELEEV 487 Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSH---S 537 +E + +R+T + K ++ +I++E + + IS G+ + S+KS+ + Sbjct: 488 REKYG-----DKRKTLIIKDDEKAKIDIEDLIIDEETV-ITISKEGFCKRVSVKSYNRSN 541 Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL----- 592 D+ + ++EGD K L T D +L+ + G Y+ N+ R I+L Sbjct: 542 SDIEDIEYREGDYNKFLLEGSTKDNVLIFTNKGNMYSTKVINIPEKRWKDRGIRLDETIK 601 Query: 593 LIDLNHNQ--DIVTAFVYDSTCKLLVVSSKG 621 IDLN + DI + + + ++S+G Sbjct: 602 TIDLNEEEIIDIYVVSKFTTQNDFIFITSRG 632 >gi|157803418|ref|YP_001491967.1| DNA gyrase subunit A [Rickettsia canadensis str. McKiel] gi|157784681|gb|ABV73182.1| DNA gyrase subunit A [Rickettsia canadensis str. McKiel] Length = 894 Score = 389 bits (999), Expect = e-105, Method: Compositional matrix adjust. Identities = 254/744 (34%), Positives = 403/744 (54%), Gaps = 63/744 (8%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 N+ V++ ++ YL YA+S I RAIPD+RDG KPVHRRII++M E G ++KS Sbjct: 8 NLVPVNIEDEMKVSYLDYAMSVIVSRAIPDVRDGLKPVHRRIIYSMYEAGNHASKPYRKS 67 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 ARIVG+V+GK HPHGD ++YDSLVR+AQ F R PL+ GQGNFG++DGD+AAA RYTE+R Sbjct: 68 ARIVGDVMGKYHPHGDSAIYDSLVRMAQDFSLRLPLVDGQGNFGSMDGDAAAAMRYTESR 127 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 M +V+ +++ +D++ V F Y+ + EP V P+ FPNLL NG+ GIAVGMAT+IP HN Sbjct: 128 MAKVSHKLVEDIDKETVSFNPNYDGSEEEPSVLPAMFPNLLVNGSGGIAVGMATNIPPHN 187 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 + E+ +A IDN +I I LLE + GPDFPTG +I+ I +Y GRG +R R Sbjct: 188 LGEVIDACCLYIDNNDIEILDLLEVVKGPDFPTGSMIL-GISGIRSAYLTGRGSIIMRGR 246 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314 +E +G I++TEIPY V K+RL+EKIAE++ KRI + D+RDES ++ VRI + Sbjct: 247 AEIENIGNSRQAIIITEIPYMVNKARLVEKIAEMVKEKRIEGISDLRDESNKNGVRIFIE 306 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K + ++ ++++ I+ + ++T F + M L G +P+VM L ++ +++ R V+ Sbjct: 307 LK-KDVEAEVVLNQIYACTQLQTSFGVIMLALKDG-LPKVMNLKEVIAAFVSFREVVITN 364 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP----KPVMVSRF--------- 421 R+ + + + IL GL IA NIDEII II+ + P + VM ++ Sbjct: 365 RTVYLLNKARDKAHILLGLTIAVSNIDEIIRIIKASNDPNTAKQEVMARKWNALNILPLV 424 Query: 422 ---------------SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466 S TE Q A+L +RL+ L +E+ +++ +L L E + ++L Sbjct: 425 KLVDDKAMLNEHGKCSFTEVQAKAVLEMRLQRLTAMEKNKLEEDLKTLATEISEYLNILG 484 Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526 S ++ + E+ +VKE F+ R T E DK + +I++E + V ++ Sbjct: 485 SRERLLKILKEELIKVKEEFATP------RLTSIEFGEFDKDI--EDLIQREEMVVTVTL 536 Query: 527 RGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAG 578 G+I RS K S L ++ D T +L S GK Y+L Sbjct: 537 GGYIKRVPLSSYRSQKRGGKGRSGLSMRDEDMTTQVFVGSTHTPMLFFSNIGKVYSLKLY 596 Query: 579 NL-LSG-RGHGEAIQLLIDLNHNQDIVTAFVYD------STCKLLVVSSKGN---AFIVE 627 L LS +G G + ++ L N+ I ++ ++KGN + +++ Sbjct: 597 KLPLSNPQGKGRPMVNILPLKENEHITNIMPLPENQDEWDNLNIMFATAKGNIRRSDLLD 656 Query: 628 ESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRGKG 686 +I +N GK +++ ++K+ V D H+ + + K L F ++ + + Sbjct: 657 FKKIQSN---GKIAIRLDEDDKLIDVKPCKEDEHILLATKAGKALRFPVESLRVIKSRTS 713 Query: 687 VRLQSYKDGGISDVICFKICEGLT 710 ++ K G VI + +G++ Sbjct: 714 DGVRGMKLAGDDSVISMTVLKGIS 737 >gi|331092117|ref|ZP_08340948.1| DNA gyrase subunit A [Lachnospiraceae bacterium 2_1_46FAA] gi|330402318|gb|EGG81889.1| DNA gyrase subunit A [Lachnospiraceae bacterium 2_1_46FAA] Length = 826 Score = 389 bits (999), Expect = e-105, Method: Compositional matrix adjust. Identities = 242/674 (35%), Positives = 379/674 (56%), Gaps = 38/674 (5%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 + V V L+ +E Y+ YA+S I RA+PD+RDG KPV RRI+++M E+ +K Sbjct: 7 DKVHDVDLKKTMESSYIDYAMSVIASRALPDVRDGLKPVQRRILYSMIELNNGPDKPHRK 66 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 ARIVG+ +GK HPHGD S+Y +LV +AQ + RYPL+ G GNFG++DGD AAA RYTEA Sbjct: 67 CARIVGDTMGKYHPHGDSSIYGALVNMAQEWSTRYPLVDGHGNFGSVDGDGAAAMRYTEA 126 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 R+++++ + +++D VDF ++E + EP V P++FPNLL NGTSGIAVGMAT+IP H Sbjct: 127 RLSKISMELTADINKDTVDFVPNFDETEKEPAVLPARFPNLLVNGTSGIAVGMATNIPPH 186 Query: 195 NVQEICEAALALIDNP-----EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249 N++E+ A + +ID+ E +IE +L+ + GPDFPTG I+ +R I E+YR GRG Sbjct: 187 NLKEVINAVVKIIDDQIEETGETTIEDILQIVKGPDFPTGATILGTR-GIEEAYRTGRGK 245 Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309 RVRA +E + G IVVTE+PY V K+RLIEKIAEL+ K+I + D+ D+S + Sbjct: 246 IRVRAVTDIEPMQNGKSRIVVTELPYMVNKARLIEKIAELVRDKKIDGITDLSDQSNREG 305 Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369 + R + ++++ ++ + M+ F + M L + P+VM L +L +L H+ Sbjct: 306 MRICIELRRDANANVILNQLYKHTQMQDTFGVIMLAL-VNNEPRVMNLLDMLNHYLKHQE 364 Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTEN 426 EV+ RR+ + + + R IL+GLLIA NIDE+I IIR K +++ F LTE Sbjct: 365 EVVTRRTKYELNKAEERAHILQGLLIALDNIDEVIRIIRGSKTTQIAKEGLIAAFDLTEV 424 Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486 Q AI+++RLR+L LE ++++E L+ ++ ++L K I EI +++ + Sbjct: 425 QAQAIVDMRLRALTGLEREKLETEYAELMKRIGELKAILADRKLLLGVIKEEIIVIRDKY 484 Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR-----SLKSHS---V 538 G R T D + + +I +E + + ++ G+I+ + KS + Sbjct: 485 ------GDERRTAIGFDEYDIS--MEDLIPREDVVITMTKLGYIKRMTVDTFKSQNRGGK 536 Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEAIQLLIDL 596 + + E D ++ T ++ + G+ Y L A + +GR G AI L+ L Sbjct: 537 GIKGMQTLEEDYIEDLFMTSTHHYVMFFTNTGRVYRLKAYEIPEAGRTARGTAIINLLQL 596 Query: 597 NHNQDIVTAFV----YDSTCKLLVVSSKGNAFIVEESEII--ANTRKGKTFLKVSSEEKM 650 + I TA + Y L + + KG +V+++ I AN RK EE Sbjct: 597 MPEEKI-TAIIPIKEYVQGEYLFMATKKG---LVKKTPITDYANVRKTGLAAITLREEDE 652 Query: 651 KLVVKVTGDHVAVV 664 + VK T + ++ Sbjct: 653 LIEVKATDNEKDII 666 >gi|259500772|ref|ZP_05743674.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus iners DSM 13335] gi|302190777|ref|ZP_07267031.1| DNA gyrase, A subunit [Lactobacillus iners AB-1] gi|259167466|gb|EEW51961.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus iners DSM 13335] Length = 815 Score = 389 bits (999), Expect = e-105, Method: Compositional matrix adjust. Identities = 233/704 (33%), Positives = 394/704 (55%), Gaps = 49/704 (6%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 + ++ V L + +L YA+S I RA+PD+RDG KPV RRI++ M+E+G+ +K Sbjct: 7 DHRIRNVDLTKTMRSSFLDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVFPDKPYK 66 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSARIVGEV+GK HPHGD S+Y+++ +AQ F RY L+ G GNFG+IDGD AA RYTE Sbjct: 67 KSARIVGEVMGKFHPHGDSSIYEAMAHMAQDFSYRYMLVDGHGNFGSIDGDRPAAMRYTE 126 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 ARM+++A +L+ +++D +D++ Y++ ++EPVV P++ P LL NG SGIAVGM T+IP Sbjct: 127 ARMSKIAMEMLRDINKDTIDWQRNYDDNENEPVVLPARVPALLVNGVSGIAVGMTTNIPP 186 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ EI L++NP++S+ +L+ I GPDFPTGGII+ R I+ +Y+ G+G VR Sbjct: 187 HNLSEIISGLHMLMENPDVSVRELMTAITGPDFPTGGIIM-GRSGILRAYKTGKGNIVVR 245 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313 A+ ++ G I+++EIPY V K+ L++KIA+L K + + I+DES + + Sbjct: 246 AKTNIDTEKSGRERIIISEIPYMVNKAELVKKIADLARDKVVDGITGIQDESDQKGLRIT 305 Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373 R +++ ++F + +++ F +NM + G P V+ L IL+ +LAH+ ++ Sbjct: 306 IDIRRDASASVVLNNLFKQTQLQSNFGVNMVAIVDGS-PHVLNLKQILQYYLAHQENIIT 364 Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDA 430 RR+ + ++ + R I++GL IA +IDEII IIR N D K +++RF L + Q A Sbjct: 365 RRTKYDLKKAEARAHIIEGLRIALDHIDEIIKIIRGSKNSDIAKEQLITRFGLDDRQAQA 424 Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490 IL++RL L LE +++ E +LL + + +L ++ I E+ ++++ F Sbjct: 425 ILDMRLVRLTGLERDKLEEEYRDLLEKIDDYKDILAKPERVDQIIFNELLDIQKRFGDE- 483 Query: 491 DLGRRRTTFCEVSRADKATL-QQAMIEKEPITVVISNRGWIRSLKSHSVDLS-------- 541 RRT E+S ++ ++ + +IEK+ + + +++ G+I+ + + + Sbjct: 484 ----RRT---EISDSEIISIDDEDLIEKQNVLLTLTHNGYIKRMPADEFKVQNRGGRGIR 536 Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLLSGRGH 586 + + D + ++ +T D +L + GK Y+ LP NL+ Sbjct: 537 GMGVQNDDFINHLIYVNTHDYLLFFTNKGKVYSKKSYEIPEYGRAAKGLPIINLVQLE-K 595 Query: 587 GEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS 646 GE +Q ++ + N D+ L+ V+ G + SE R G L + Sbjct: 596 GENVQAVVKIATN---------DTNKYLMFVTKYGIVKRISISEFTNIRRSGLIALNLRE 646 Query: 647 EEKMKLVVKVTGDHVAVVGENRKL-LIFSIDQIPEMSR-GKGVR 688 +++ V+ G ++G +IF+ +++ M R GVR Sbjct: 647 NDELSNVLLTDGSQNILIGTRLGYAVIFNENEVRTMGRVASGVR 690 >gi|332885150|gb|EGK05401.1| DNA gyrase, A subunit [Dysgonomonas mossii DSM 22836] Length = 866 Score = 389 bits (998), Expect = e-105, Method: Compositional matrix adjust. Identities = 243/717 (33%), Positives = 412/717 (57%), Gaps = 44/717 (6%) Query: 13 VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72 E+ + +++ ++ Y+ Y++S I RA+PD+RDGFKPVHRRI++ MSE+G Sbjct: 4 TEDRIIRINIEDEMKSAYIDYSMSVIVSRALPDVRDGFKPVHRRILYGMSELGNTSNKPH 63 Query: 73 KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132 KKSARIVGEV+GK HPHGD SVY ++VR+AQ + RY L+ GQGN G++DGDS AA RYT Sbjct: 64 KKSARIVGEVLGKYHPHGDSSVYFAMVRMAQEWSMRYLLVDGQGNMGSVDGDSPAAMRYT 123 Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192 EAR++++AE +L+ +D++ VDF+ +++ EP V P++ PNLL NG SGIAVGMAT++ Sbjct: 124 EARLSRLAEEMLKDIDKETVDFQLNFDDTLQEPTVLPTRIPNLLVNGASGIAVGMATNMA 183 Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252 HN+ E +A +A ID+ +I + L++YI PDFP+GG I + + +++ GRG + Sbjct: 184 PHNMTESIDAIVAYIDDRDIDTDGLMQYIKAPDFPSGGFIY-GYQGVRDAFETGRGRVVM 242 Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRI 311 R R +E G IV+TEIPY V K+ LI+ IA+L+ KR+ + ++ DES + +RI Sbjct: 243 RGRAEIETEG-NHEKIVITEIPYLVNKAELIKHIADLVGEKRLDGISNVNDESDRQGMRI 301 Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371 V+ K R + ++++ ++ L+ +++ F +N L GR P+ + L ++ ++ HR +V Sbjct: 302 VVDIK-RDANANVVLNKLYKLTALQSSFSVNNIALVKGR-PRTLNLKDMISLFVEHRIDV 359 Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQV 428 + RR+++ ++ + R IL+GL+IA NIDE+IA+IR P+ +++RFSLTE Q Sbjct: 360 VIRRTTYDLRKAEERAHILEGLIIASDNIDEVIALIRASKSPQEAIESLMNRFSLTEIQS 419 Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488 AI+ +RLR L LE+ ++++E D + ++ +L++ + I E+ E+K + Sbjct: 420 RAIVEMRLRQLTGLEQDKLRNEYDEIQKLIAYLNEILSNEDLRMQVIKDELIEIKNKYGD 479 Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDL 540 + RRT E+ A + + + + + +S+ G+I R+ V Sbjct: 480 A-----RRT---EIVYASEELNPEDFYANDEMIITVSHFGYIKRTPLTEFRAQNRGGVGA 531 Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNH 598 ++ D ++ A + ILL + GK + L ++ G G AIQ L+++ Sbjct: 532 KGSETRDADFIEHIYPASMHNYILLFTQKGKCFWLRVFDIPEGSKNSKGRAIQNLLNI-E 590 Query: 599 NQDIVTAFV---------YDSTCKLLVVSSKGNAFIVEESEIIANTR---KGKTFLKVSS 646 + D VTAF+ Y ++ L+ + G +++++ + A +R G + + Sbjct: 591 SDDKVTAFIRVRGFSDTDYINSHYLVFCTQAG---VIKKTRLEAYSRPRQNGVNAITIRE 647 Query: 647 EEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVI 701 ++++ V+ GD + + N + + F + EM R GVR + G +VI Sbjct: 648 DDRVIEVLMTDGDSEILIANRNGRAIRFHESDVREMGRTATGVRGMRIDEDGQDEVI 704 >gi|307317170|ref|ZP_07596611.1| DNA gyrase, A subunit [Sinorhizobium meliloti AK83] gi|306897258|gb|EFN28003.1| DNA gyrase, A subunit [Sinorhizobium meliloti AK83] Length = 931 Score = 389 bits (998), Expect = e-105, Method: Compositional matrix adjust. Identities = 237/679 (34%), Positives = 374/679 (55%), Gaps = 61/679 (8%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 ++ +S+ ++ YL YA+S I RA+PD+RDG KPVHRRI++ MSE+G+D+ + K A Sbjct: 16 IEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYGMSELGIDWNKKYVKCA 75 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+ G+V+GK HPHG+ ++YD+L R+AQ + R PLI GQGNFG++DGD AA RYTE R+ Sbjct: 76 RVTGDVMGKYHPHGNMAIYDALARMAQDWSLRLPLIDGQGNFGSVDGDPPAAERYTECRL 135 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 + A +L +D+D VDFRD Y+ EPVV P+KFPNLL NG GIAVGMAT+IP HN+ Sbjct: 136 QKAAHSLLDDLDKDTVDFRDNYDGTLHEPVVVPAKFPNLLVNGAGGIAVGMATNIPPHNL 195 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ + +ALIDNP I + +L++ I GPDFPTG +I+ R I ++Y GRG +R R Sbjct: 196 VEVIDGCIALIDNPAIELPELMQIIPGPDFPTGALIL-GRSGIRQAYETGRGSVIMRGRA 254 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316 +E + I++TEIPYQV K+ +IEK+AEL+ KRI + D+RDES V+ Sbjct: 255 HIEPMRGDREQIIITEIPYQVNKATMIEKMAELVREKRIEGISDLRDESDRQGYRVVIEL 314 Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376 R + ++++ ++ + ++T F NM L+ G+ P+ M L +L+ +++ R +V+ RR+ Sbjct: 315 KRDANAEVILNQLYRYTPLQTSFGCNMVALNGGK-PEQMTLLDMLRAFVSFREDVVSRRT 373 Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP----VMVSR------------ 420 + ++ R +L GL IA NIDE+I +IR P+ +M R Sbjct: 374 KYLLRKARERAHVLVGLAIAVANIDEVIKLIRQAPDPQTAREQLMERRWPAHDVDALIRL 433 Query: 421 -------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467 ++L+E Q AIL+LRL+ L L +I EL+ + E + +L+S Sbjct: 434 IDDPRHRINDDATYNLSEEQARAILDLRLQRLTALGRDEIGDELNKIGEEIKDYLDILSS 493 Query: 468 GKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNR 527 + + E+ V++ F RRT E++ + +I +E + V +S+ Sbjct: 494 RLRIMQIVKNELTAVRDEFGTP-----RRT---EIAEGGPDMDDEDLIAQEDMVVTVSHL 545 Query: 528 GWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYT 574 G+I R+ + S + ++ D + A+T +L S+ G K + Sbjct: 546 GYIKRVPLTTYRAQRRGGKGRSGMATRDEDFVTRLFVANTHTPVLFFSSRGIVYKEKVWR 605 Query: 575 LPAGNLLSGRGHGEAIQLLIDLNHNQDIVT--AFVYDSTC----KLLVVSSKGNAFIVEE 628 LP G S G+A+ ++ L + I T D T ++ +++G + Sbjct: 606 LPIGTPQS---RGKALINMLPLEPGERITTIMPLPEDETTWENLDVMFSTTRGTVRRNKL 662 Query: 629 SEIIANTRKGKTFLKVSSE 647 S+ + R GK +K+ E Sbjct: 663 SDFVQVNRNGKIAMKLEEE 681 >gi|91787677|ref|YP_548629.1| DNA gyrase subunit A [Polaromonas sp. JS666] gi|91696902|gb|ABE43731.1| DNA gyrase subunit A [Polaromonas sp. JS666] Length = 880 Score = 389 bits (998), Expect = e-105, Method: Compositional matrix adjust. Identities = 235/620 (37%), Positives = 354/620 (57%), Gaps = 67/620 (10%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 +SL + YL YA+S I RA+PD RDG KPVHRR++ AM E+ D+ +KKSARIV Sbjct: 11 ISLEEEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHELNNDWNRPYKKSARIV 70 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGDQSVYD++VR+AQ F R+ L+ GQGNFG++DGD+AAA RYTE R++++ Sbjct: 71 GDVIGKYHPHGDQSVYDTIVRMAQDFSLRHLLVDGQGNFGSVDGDNAAAMRYTEIRLSKI 130 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A +L +D++ VDF Y+ + EP+V P++ PNLL NG+ GIAVGMAT+IP HN+ E+ Sbjct: 131 AHELLADLDKETVDFGPNYDGSEQEPLVMPTRLPNLLVNGSGGIAVGMATNIPPHNLNEV 190 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 +A L ++ NPE SI++L+E + PDFPTGGII + + YR GRG +RA+ E Sbjct: 191 VDACLHMLKNPEASIDELMEIVPAPDFPTGGIIY-GINGVKDGYRTGRGKVVMRAKCHFE 249 Query: 260 EVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318 ++ +G I+V E+PYQV K L E++AEL+ K+I + I+DES + ++ R Sbjct: 250 DIDKGQRQSIIVDELPYQVNKKTLQERMAELVHEKKIEGISHIQDESDKSGMRLVIELKR 309 Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378 P++++ +++ + ++ F +NM L G+ P++ L +++ +L+HRREV+ RR+ F Sbjct: 310 GEVPEVVLNNLYKQTQLQDTFGINMVALVNGQ-PKLCNLKDLIQVFLSHRREVVTRRTVF 368 Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV-----------------MVSR- 420 ++ R +L+GL +A NID+ IAIIRN P PV M++R Sbjct: 369 TLRKARERGHVLEGLAVALANIDDFIAIIRNAPTP-PVAKAELMLRPWDSSLVREMLTRT 427 Query: 421 ----------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELD 452 + L+E Q IL +RL+ L LE+ +I +E Sbjct: 428 RADGGVVNADDYRPDGLEKAFGMGSDGLYRLSETQAQEILQMRLQRLTGLEQDKIVAEYK 487 Query: 453 NLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ 512 ++AE + + +L ++ I E+ +K F + T LG RR+ E S D +T + Sbjct: 488 EVMAEIDDLLDILAKPERVSIIIGEELSAIKLEFGQ-TKLGARRSQI-EHSSFDLST--E 543 Query: 513 AMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRIL 564 +I + V +S+ G+I R+ K A KE D + A+T D IL Sbjct: 544 DLITPTDMVVTLSHSGYIKSQPLSEYRAQKRGGRGKQATATKEDDWVDQLFIANTHDYIL 603 Query: 565 LLSTDGKAYTL-----PAGN 579 S G+ Y L PAG+ Sbjct: 604 CFSNRGRLYWLKVWEVPAGS 623 >gi|225619931|ref|YP_002721188.1| DNA gyrase subunit A [Brachyspira hyodysenteriae WA1] gi|225214750|gb|ACN83484.1| DNA gyrase subunit A [Brachyspira hyodysenteriae WA1] Length = 834 Score = 389 bits (998), Expect = e-105, Method: Compositional matrix adjust. Identities = 258/766 (33%), Positives = 421/766 (54%), Gaps = 50/766 (6%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 V +S+ L E YL YA+S I RA+PD+RDG KPVHRRI++AM + L +KKSA Sbjct: 27 VDHISIENELRESYLTYAMSVIVSRALPDVRDGLKPVHRRILYAMYDANLTHDKPYKKSA 86 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 VGEV+ + HPHGD +VY ++VR+AQ F RY L+ GQGNFG+ID D AA RYTEARM Sbjct: 87 ATVGEVLARYHPHGDAAVYGTMVRMAQDFSMRYLLVDGQGNFGSIDDDPPAAMRYTEARM 146 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 T+ AE +L ++++ V F +++ +EP V P+ P LL NG+ GIA+GMAT++P HN+ Sbjct: 147 TRFAEEMLNDIEKETVKFVPNFDDSRTEPSVLPATVPQLLVNGSMGIAIGMATNMPPHNL 206 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 +E+ A + ID+ + I+ L+ Y+ GPDFPT GII +E I E+Y G+G ++RAR Sbjct: 207 KEVVNAIVYYIDHQDAEIKDLMRYVQGPDFPTAGIIY-GKEGIKEAYTTGKGRIKLRARL 265 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE--DVRIVLF 314 VEE R IVV E+PY V K+ L EKIA+L+ +I + DIRDES+ +R+++ Sbjct: 266 EVEETKRDREAIVVKELPYGVVKTTLHEKIADLVKQGKIEGVADIRDESSNRAGIRLIIE 325 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K + + +++ ++ +D+ET F + +N+ + P+V+ L ++K ++ HR EV+ + Sbjct: 326 LK-KGVATQIVLNQLWKHTDLETTFGI-INLALVNGEPKVLNLKELIKYFVDHRVEVITK 383 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAI 431 R+ + + + IL+GLLIA NI+E+I IIR N D + +++RF L+E Q AI Sbjct: 384 RTEYDLNQAKAKAHILEGLLIAQANIEEVIRIIRESENTDAARTTLMNRFKLSEKQAQAI 443 Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS---K 488 L++ L+ L LE+ +I+ EL L + LL ++ I E++++ E + + Sbjct: 444 LDMPLKRLTALEKLKIEQELQQLREFIAYCEDLLAHPEKILAVIKDELKKISEKYGDDRR 503 Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF--- 545 S +G +T E+ D +I E + V I+ +G+I+ + + S Sbjct: 504 SEIIG--KTNDTEIDEED-------LIHDEDVAVSITTQGFIKRVPASSYRTQGRGGVGV 554 Query: 546 ----KEGDSLKIALHAHTTDRILLLSTD-GKAYTLPAGNL--LSGRGHGEAIQLLIDLNH 598 +G+ L +T L + TD GKA+ + + LS G++I+ +++L Sbjct: 555 QGGKSQGEHYIEHLFVASTKDYLFIFTDRGKAFWMKVHEIPALSKISQGKSIKFILNLAP 614 Query: 599 NQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655 + I + F +D +++V+ G +E + ++G L + + +++ V Sbjct: 615 EEKITSYFTVSEFDPKQSIIMVTKMGTIKKMELKHLENAKKRGILALTLENNDELVAVSP 674 Query: 656 V-TGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFK---ICEGLT 710 V TGD + L + ++I +M R GV+ S D D IC I +G + Sbjct: 675 VQTGDDFIMTTAAGLALRITEEKIRKMGRAAAGVKGISLDD----DDICVSGNAIHKGES 730 Query: 711 WI----DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752 I + G+ + + ++ G RGG G + K ++G +S Sbjct: 731 LIVITENGIGKRLSSKQFNVKG----RGGKGQIYIKPDNKTGNVVS 772 >gi|254422070|ref|ZP_05035788.1| DNA gyrase, A subunit [Synechococcus sp. PCC 7335] gi|196189559|gb|EDX84523.1| DNA gyrase, A subunit [Synechococcus sp. PCC 7335] Length = 911 Score = 389 bits (998), Expect = e-105, Method: Compositional matrix adjust. Identities = 262/763 (34%), Positives = 419/763 (54%), Gaps = 48/763 (6%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 +E + LR + YL YA+S I RA+PD RDG KPVHRRI++AM E+GL F+ Sbjct: 5 QERIVPTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMHELGLTADRPFR 64 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 K AR+VGEV+GK HPHGD +VYD+LVR+AQ F R+PLI+G GNFG+ID D AA RYTE Sbjct: 65 KCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRHPLINGHGNFGSIDNDPPAAMRYTE 124 Query: 134 ARMTQV-AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192 +R+ + +LQ ++ + VDF D ++ EPVV P++ P LL NG+SGIAVGMAT+IP Sbjct: 125 SRLQALTGAALLQDIESETVDFADNFDGSQQEPVVLPARIPQLLINGSSGIAVGMATNIP 184 Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252 HN+ E+ + +ALIDNP ++ +L+EYI GPDFPTG I+ SR I E+Y GRG + Sbjct: 185 PHNLGEVIDGVVALIDNPALTSMELMEYIPGPDFPTGAQIIGSR-GIREAYATGRGSVTM 243 Query: 253 RARWCVE-EVGRG---SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308 R +E + RG I++TE+PYQ K+ LIEKIA+++ R+ + D+RDES D Sbjct: 244 RGVATIETQETRGRPDRETIIITELPYQTNKAALIEKIADMVNEHRLEGISDLRDESDRD 303 Query: 309 -VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367 +RIV+ K R P +++ +++ + ++ F +NM L + PQ++ L L+ +L Sbjct: 304 GMRIVIELK-RDAYPKVVLNNLYKQTPLQNNFGVNMLGL-VNSEPQLLSLLDFLQVFLDF 361 Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLT 424 R E + RR+ + ++ R +L+G LIA N+D +IA+IR + K ++ + + Sbjct: 362 RIETITRRTQYELRKAQERDHLLQGYLIALDNLDAVIALIRGSADAASAKEELIESYGFS 421 Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484 Q DAIL ++LR L LE +I+ E + L + ++ +L + + I E+ +++ Sbjct: 422 ATQADAILQMQLRRLTALEAEKIQQEHEALTEKIADLEDILANRDRILAIIKEEVIQIRN 481 Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQ-AMIEKEPITVVISNRGWIRSLKSHSVDL--- 540 ++ RRT +AD+ L ++I E + ++++ +G+I+ + + + Sbjct: 482 AYAN-----ERRTLI----KADENDLSDISLIANEQVAILVTEQGYIKRMLVDTFEAQNR 532 Query: 541 -----SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL----LSGRGHGEAIQ 591 S K+ D ++ + + D +L S G AY+L A + + +G+ Sbjct: 533 ATRGKSGTRMKDDDGIEHFITCCSHDHVLFFSDRGVAYSLRAYQIPESSRTAKGYPLVQM 592 Query: 592 LLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE--EK 649 L I V S LV+ ++G FI + + N + + +S E ++ Sbjct: 593 LPIPKEEKVTSVIGVSEFSEDDYLVMLTQG-GFIKKTALSAFNRIRTNGLIAISLEDGDE 651 Query: 650 MKLVVKVTGDHVAVVGENRKLLI-FSID--QIPEMSR-GKGVRLQSYKDGG--IS-DVIC 702 ++ V T D ++G R + I F D Q+ + R KGV+ S ++G IS D++ Sbjct: 652 LRWVRMATADDSVLIGSQRGMTIHFKADHAQLRPLGRPTKGVKSMSLREGDQLISMDILP 711 Query: 703 FKICEGLT-WIDSAGRSYNRSENDLLG-W--LGKRGGVGSLVP 741 ++ E + ID + + N G W + GG+G VP Sbjct: 712 SQVVEEVEGAIDDSDEDADELANADQGPWVLVVSSGGLGKRVP 754 >gi|307307939|ref|ZP_07587664.1| DNA gyrase, A subunit [Sinorhizobium meliloti BL225C] gi|306901555|gb|EFN32158.1| DNA gyrase, A subunit [Sinorhizobium meliloti BL225C] Length = 931 Score = 389 bits (998), Expect = e-105, Method: Compositional matrix adjust. Identities = 237/679 (34%), Positives = 374/679 (55%), Gaps = 61/679 (8%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 ++ +S+ ++ YL YA+S I RA+PD+RDG KPVHRRI++ MSE+G+D+ + K A Sbjct: 16 IEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYGMSELGIDWNKKYVKCA 75 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+ G+V+GK HPHG+ ++YD+L R+AQ + R PLI GQGNFG++DGD AA RYTE R+ Sbjct: 76 RVTGDVMGKYHPHGNTAIYDALARMAQDWSLRLPLIDGQGNFGSVDGDPPAAERYTECRL 135 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 + A +L +D+D VDFRD Y+ EPVV P+KFPNLL NG GIAVGMAT+IP HN+ Sbjct: 136 QKAAHSLLDDLDKDTVDFRDNYDGTLHEPVVVPAKFPNLLVNGAGGIAVGMATNIPPHNL 195 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ + +ALIDNP I + +L++ I GPDFPTG +I+ R I ++Y GRG +R R Sbjct: 196 VEVIDGCIALIDNPAIELPELMQIIPGPDFPTGALIL-GRSGIRQAYETGRGSVIMRGRA 254 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316 +E + I++TEIPYQV K+ +IEK+AEL+ KRI + D+RDES V+ Sbjct: 255 HIEPMRGDREQIIITEIPYQVNKATMIEKMAELVREKRIEGISDLRDESDRQGYRVVIEL 314 Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376 R + ++++ ++ + ++T F NM L+ G+ P+ M L +L+ +++ R +V+ RR+ Sbjct: 315 KRDANAEVILNQLYRYTPLQTSFGCNMVALNGGK-PEQMTLLDMLRAFVSFREDVVSRRT 373 Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP----VMVSR------------ 420 + ++ R +L GL IA NIDE+I +IR P+ +M R Sbjct: 374 KYLLRKARERAHVLVGLAIAVANIDEVIKLIRQAPDPQTAREQLMERRWPAHDVDALIRL 433 Query: 421 -------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467 ++L+E Q AIL+LRL+ L L +I EL+ + E + +L+S Sbjct: 434 IDDPRHRINDDATYNLSEEQARAILDLRLQRLTALGRDEIGDELNKIGEEIKDYLDILSS 493 Query: 468 GKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNR 527 + + E+ V++ F RRT E++ + +I +E + V +S+ Sbjct: 494 RLRIMQIVKNELTAVRDEFGTP-----RRT---EIAEGGPDMDDEDLIAQEDMVVTVSHL 545 Query: 528 GWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYT 574 G+I R+ + S + ++ D + A+T +L S+ G K + Sbjct: 546 GYIKRVPLTTYRAQRRGGKGRSGMATRDEDFVTRLFVANTHTPVLFFSSRGIVYKEKVWR 605 Query: 575 LPAGNLLSGRGHGEAIQLLIDLNHNQDIVT--AFVYDSTC----KLLVVSSKGNAFIVEE 628 LP G S G+A+ ++ L + I T D T ++ +++G + Sbjct: 606 LPIGTPQS---RGKALINMLPLEPGERITTIMPLPEDETTWENLDVMFSTTRGTVRRNKL 662 Query: 629 SEIIANTRKGKTFLKVSSE 647 S+ + R GK +K+ E Sbjct: 663 SDFVQVNRNGKIAMKLEEE 681 >gi|301310232|ref|ZP_07216171.1| DNA gyrase, A subunit [Bacteroides sp. 20_3] gi|300831806|gb|EFK62437.1| DNA gyrase, A subunit [Bacteroides sp. 20_3] Length = 870 Score = 389 bits (998), Expect = e-105, Method: Compositional matrix adjust. Identities = 251/766 (32%), Positives = 423/766 (55%), Gaps = 49/766 (6%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 +++ ++ Y+ Y++S I RA+PD+RDGFKPVHRRI+ M+E+G +KKSARIV Sbjct: 10 INIEEEMKSAYIDYSMSVIVSRALPDVRDGFKPVHRRILFGMNELGNTSDKPYKKSARIV 69 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 GEV+GK HPHGD SVY ++VR+AQ + RYPL+ GQGNFG++DGDS AA RYTEAR++++ Sbjct: 70 GEVLGKYHPHGDSSVYFAMVRMAQTWSMRYPLVDGQGNFGSVDGDSPAAMRYTEARLSKL 129 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 AE +L+ +D+D VDF+ +++ EP V P++ PNLL NG SGIAVGMAT++P+HN+ E+ Sbjct: 130 AEEMLRDIDKDTVDFQLNFDDTLKEPTVLPTRVPNLLVNGGSGIAVGMATNMPTHNLSEV 189 Query: 200 CEAALALID-NPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258 + +A ID +I +E L++YI PDFPTG I + +++ GRG +R + + Sbjct: 190 LDGCIAYIDAKGDIEVEGLMQYIKAPDFPTGATIY-GYAGVKDAFETGRGRIILRGKAEI 248 Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKN 317 EV I++TEIPY V K+ LI+ IA+L+ KRI + ++ DES +RIV+ K Sbjct: 249 -EVENNHEKIIITEIPYLVNKAELIKYIADLVNEKRIDGISNVNDESDRSGMRIVVDVK- 306 Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377 R + +++ ++ L+ +++ F +N L GR P+++ L ++K ++ HR EV+ RR+ Sbjct: 307 RDANSSVVLNKLYKLTALQSSFSVNNIALVNGR-PRLLNLKDLIKAFVEHRHEVVIRRTK 365 Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVDAILNL 434 + ++ + R IL+GL+IA NIDE+IAII++ P+ ++ RFSL+E Q AI+ + Sbjct: 366 YELRKAEERAHILEGLIIASDNIDEVIAIIKSSKSPQEAIERLIERFSLSELQARAIVEM 425 Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494 RLR L LE+ ++++E + + ++ +L + I E+ E+K+ F G Sbjct: 426 RLRQLTGLEQDKLRAEYEEIEKLIAYLNEILENEDLCMKVIKDELLEIKDKF------GD 479 Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFK 546 R T ++ A + + + + + +S+ G+I R+ V + Sbjct: 480 ERKT--DIVYASEELNPEDFYADDEMIITVSHMGYIKRTPLSEFRAQGRGGVGAKGSETR 537 Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQDIVT 604 + D ++ A +L + GK Y L + G G AIQ L+++ + D V Sbjct: 538 DEDFVEYIYPASMHATLLFFTAKGKCYWLKVFEIPEGAKNAKGRAIQNLLNIEPD-DKVQ 596 Query: 605 AFV----------YDSTCKLLVVSSKGNAFIVEESEIIANTR---KGKTFLKVSSEEKMK 651 AF+ + ++ LL + KG +++++ + A +R G + + ++ + Sbjct: 597 AFIRVKKLTTDTEFINSHYLLFCTKKG---VIKKTLLEAYSRPRQNGVNAITLREDDGLI 653 Query: 652 LVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSRG----KGVRLQSYKDGGISDVICFKIC 706 V G++ V + N + + F + M R KG+ L + +IC K Sbjct: 654 QVCMTNGNNEVIIANRNGRAIRFHESAVRVMGRTASGVKGMTLDEDNTDEVVGMICIKDK 713 Query: 707 EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752 E T + + + Y + + + RGG G ++GK ++ Sbjct: 714 EKETVLVVSEQGYGKRSSIEDYRITNRGGKGVKTINITEKTGKLVA 759 >gi|300869212|ref|ZP_07113806.1| DNA gyrase subunit A [Oscillatoria sp. PCC 6506] gi|300332757|emb|CBN59004.1| DNA gyrase subunit A [Oscillatoria sp. PCC 6506] Length = 893 Score = 389 bits (998), Expect = e-105, Method: Compositional matrix adjust. Identities = 223/578 (38%), Positives = 334/578 (57%), Gaps = 26/578 (4%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 E + LR + YL YA+S I RA+PD RDG KPVHRRI++AM+E+GL F+ Sbjct: 5 ESRIIPTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMNELGLTPDRPFR 64 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 K AR+VGEV+GK HPHGD +VYD+LVR+AQ F R PLI G GNFG++D D AA RYTE Sbjct: 65 KCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRQPLIDGHGNFGSVDNDPPAAMRYTE 124 Query: 134 ARMTQV-AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192 R+T + ++ +L+ +D + VDF D ++ EP+V PS+ P +L NG+SGIAVGMAT+IP Sbjct: 125 CRLTPLTSDAMLRDIDSETVDFGDNFDGSQQEPLVLPSRIPQILVNGSSGIAVGMATNIP 184 Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252 HN+ E+ E +ALI NPEI+ +L++YI GPDFPTG I+ + SI E+Y GRG + Sbjct: 185 PHNLGEVIEGLMALIANPEITDIELMQYIPGPDFPTGAQIL-GKASIREAYTTGRGSITM 243 Query: 253 RARWCVEEV---GR-GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308 R +E + GR I++TE+PYQ K+ LIEKIAE++ KR+ + DIRDES D Sbjct: 244 RGVAAIETIEHPGRPDKEAIIITELPYQTNKAALIEKIAEMVNEKRLEGISDIRDESDRD 303 Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368 ++ R P +++ +++ + ++ F NM L G PQ++ L L +L R Sbjct: 304 GMRIVIELKRDAYPRVVLNNLYKQTPLQANFGANMLALVNGE-PQLLSLKQFLSVFLDFR 362 Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTE 425 E + RR+ + ++ + R +L+GLLIA N+D II +IR + K ++ + L+E Sbjct: 363 IETITRRTQYELRKAEERDHLLQGLLIALDNLDAIIHLIRSAADTATAKQELIDTYGLSE 422 Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485 Q DAIL ++LR L LE +I E + LL + + +L ++ I E+ E+K Sbjct: 423 VQSDAILQMQLRRLTALEAQKITQEHEELLEKIADLLDILAKRERILEIIQTEVAEIKLK 482 Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL----- 540 F+ RRT + A+ + +I E ++++ +G+I+ + + + Sbjct: 483 FASP-----RRTI---IEHAEGEIDETDLIANEQAIILLTEQGYIKRMPVSTFEAQSRAT 534 Query: 541 ---SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575 + KE D ++ L D +L S G Y L Sbjct: 535 RGKAGTKMKEDDGVEHFLSCCDHDSVLFFSDRGVVYCL 572 >gi|86160761|ref|YP_467546.1| DNA gyrase subunit A [Anaeromyxobacter dehalogenans 2CP-C] gi|85777272|gb|ABC84109.1| DNA gyrase subunit A [Anaeromyxobacter dehalogenans 2CP-C] Length = 907 Score = 389 bits (998), Expect = e-105, Method: Compositional matrix adjust. Identities = 237/584 (40%), Positives = 357/584 (61%), Gaps = 30/584 (5%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 V++ + + YL Y++S I RA+PD+RDG KPVHRR+++AM GL + + K A +V Sbjct: 28 VNIEQEMRKSYLDYSMSVIIGRALPDVRDGLKPVHRRVLYAMHTEGLHYNKRYSKCAGVV 87 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 GEV+ K HPHGD SVYD+LVRLAQ + RYPLI GQGNFG++DGD AAAYRYTE R+ ++ Sbjct: 88 GEVLKKYHPHGDASVYDALVRLAQDWNLRYPLIDGQGNFGSVDGDPAAAYRYTECRLERL 147 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 ++ +L +D+D VD+ ++E EP V P++FPNLL NG++GIAVGMAT+IP HN+ E+ Sbjct: 148 SDHLLADIDKDTVDWGPNFDESILEPRVLPTRFPNLLVNGSAGIAVGMATNIPPHNMGEV 207 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 +AA+ LI+NP+ ++ L+ +I GPDFPT GII R+ I +Y GRG +VRAR VE Sbjct: 208 IDAAVHLIENPKATVLDLMRFIPGPDFPTAGII-RGRDGIRAAYEKGRGTIQVRARTVVE 266 Query: 260 -EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLFPKN 317 IVVTEIPYQV K++L+E IAEL+ KRI + D+RDES+ E +RIV+ K Sbjct: 267 IHPKTERETIVVTEIPYQVNKAKLVEHIAELVREKRIEGISDLRDESSREGMRIVIELKR 326 Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377 +L +++ +++ + M+ F + M + G+ P+V+ L +L+ ++AHRR+V+ RR+ Sbjct: 327 DAL-AQVVLNNLYAHTQMQMGFGVIMLAIDGGQ-PRVLTLKEMLERFVAHRRDVVTRRTR 384 Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAII---RNEDKPKPVMVSRFSLTENQVDAILNL 434 + ++ R IL G IA +IDEII +I ++ D + M++RF+L+E Q AIL + Sbjct: 385 YELRKAREREHILLGYQIALDHIDEIIELIKKAKDRDAARDEMMARFALSELQAKAILEM 444 Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494 +L+ L LE +I EL + ++ +L S K I E+REVK++F+ Sbjct: 445 QLQRLTGLERQKILDELAEVQKLITRLKEILASEKVLMELIVGELREVKQLFADE----- 499 Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFK 546 R T + D +T + +I +E + V +S+ G++ R+ K + + Sbjct: 500 -RRTEIQGEATDLST--EDLIAEEEMVVTVSHLGYVKRNPVSLYRAQKRGGRGKTGAATR 556 Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTL------PAGNLLSGR 584 + D L+ A T +L+ S GK Y L PAG G+ Sbjct: 557 DEDFLESLFVASTHSYLLVFSDKGKVYWLKVHEIPPAGRTAKGK 600 >gi|15965313|ref|NP_385666.1| DNA gyrase subunit A [Sinorhizobium meliloti 1021] gi|15074493|emb|CAC46139.1| Probable DNA gyrase subunit A [Sinorhizobium meliloti 1021] Length = 931 Score = 389 bits (998), Expect = e-105, Method: Compositional matrix adjust. Identities = 237/679 (34%), Positives = 374/679 (55%), Gaps = 61/679 (8%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 ++ +S+ ++ YL YA+S I RA+PD+RDG KPVHRRI++ MSE+G+D+ + K A Sbjct: 16 IEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYGMSELGIDWNKKYVKCA 75 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+ G+V+GK HPHG+ ++YD+L R+AQ + R PLI GQGNFG++DGD AA RYTE R+ Sbjct: 76 RVTGDVMGKYHPHGNAAIYDALARMAQDWSLRLPLIDGQGNFGSVDGDPPAAERYTECRL 135 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 + A +L +D+D VDFRD Y+ EPVV P+KFPNLL NG GIAVGMAT+IP HN+ Sbjct: 136 QKAAHSLLDDLDKDTVDFRDNYDGTLHEPVVVPAKFPNLLVNGAGGIAVGMATNIPPHNL 195 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ + +ALIDNP I + +L++ I GPDFPTG +I+ R I ++Y GRG +R R Sbjct: 196 VEVIDGCIALIDNPAIELPELMQIIPGPDFPTGALIL-GRSGIRQAYETGRGSVIMRGRA 254 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316 +E + I++TEIPYQV K+ +IEK+AEL+ KRI + D+RDES V+ Sbjct: 255 HIEPMRGDREQIIITEIPYQVNKATMIEKMAELVREKRIEGISDLRDESDRQGYRVVIEL 314 Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376 R + ++++ ++ + ++T F NM L+ G+ P+ M L +L+ +++ R +V+ RR+ Sbjct: 315 KRDANAEVILNQLYRYTPLQTSFGCNMVALNGGK-PEQMTLLDMLRAFVSFREDVVSRRT 373 Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP----VMVSR------------ 420 + ++ R +L GL IA NIDE+I +IR P+ +M R Sbjct: 374 KYLLRKARERAHVLVGLAIAVANIDEVIKLIRQAPDPQTAREQLMERRWPAHDVDALIRL 433 Query: 421 -------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467 ++L+E Q AIL+LRL+ L L +I EL+ + E + +L+S Sbjct: 434 IDDPRHRINDDATYNLSEEQARAILDLRLQRLTALGRDEIGDELNKIGEEIKDYLDILSS 493 Query: 468 GKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNR 527 + + E+ V++ F RRT E++ + +I +E + V +S+ Sbjct: 494 RLRIMQIVKNELTAVRDEFGTP-----RRT---EIAEGGPDMDDEDLIAQEDMVVTVSHL 545 Query: 528 GWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYT 574 G+I R+ + S + ++ D + A+T +L S+ G K + Sbjct: 546 GYIKRVPLTTYRAQRRGGKGRSGMATRDEDFVTRLFVANTHTPVLFFSSRGIVYKEKVWR 605 Query: 575 LPAGNLLSGRGHGEAIQLLIDLNHNQDIVT--AFVYDSTC----KLLVVSSKGNAFIVEE 628 LP G S G+A+ ++ L + I T D T ++ +++G + Sbjct: 606 LPIGTPQS---RGKALINMLPLEPGERITTIMPLPEDETTWENLDVMFSTTRGTVRRNKL 662 Query: 629 SEIIANTRKGKTFLKVSSE 647 S+ + R GK +K+ E Sbjct: 663 SDFVQVNRNGKIAMKLEEE 681 >gi|150007732|ref|YP_001302475.1| DNA gyrase subunit A [Parabacteroides distasonis ATCC 8503] gi|255013563|ref|ZP_05285689.1| DNA gyrase A subunit [Bacteroides sp. 2_1_7] gi|256839992|ref|ZP_05545501.1| DNA gyrase, A subunit [Parabacteroides sp. D13] gi|262381760|ref|ZP_06074898.1| DNA gyrase, A subunit [Bacteroides sp. 2_1_33B] gi|149936156|gb|ABR42853.1| DNA gyrase A subunit [Parabacteroides distasonis ATCC 8503] gi|256738922|gb|EEU52247.1| DNA gyrase, A subunit [Parabacteroides sp. D13] gi|262296937|gb|EEY84867.1| DNA gyrase, A subunit [Bacteroides sp. 2_1_33B] Length = 870 Score = 389 bits (998), Expect = e-105, Method: Compositional matrix adjust. Identities = 251/766 (32%), Positives = 423/766 (55%), Gaps = 49/766 (6%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 +++ ++ Y+ Y++S I RA+PD+RDGFKPVHRRI+ M+E+G +KKSARIV Sbjct: 10 INIEEEMKSAYIDYSMSVIVSRALPDVRDGFKPVHRRILFGMNELGNTSDKPYKKSARIV 69 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 GEV+GK HPHGD SVY ++VR+AQ + RYPL+ GQGNFG++DGDS AA RYTEAR++++ Sbjct: 70 GEVLGKYHPHGDSSVYFAMVRMAQTWSMRYPLVDGQGNFGSVDGDSPAAMRYTEARLSKL 129 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 AE +L+ +D+D VDF+ +++ EP V P++ PNLL NG SGIAVGMAT++P+HN+ E+ Sbjct: 130 AEEMLRDIDKDTVDFQLNFDDTLKEPTVLPTRVPNLLVNGGSGIAVGMATNMPTHNLSEV 189 Query: 200 CEAALALID-NPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258 + +A ID +I +E L++YI PDFPTG I + +++ GRG +R + + Sbjct: 190 LDGCIAYIDAKGDIEVEGLMQYIKAPDFPTGATIY-GYAGVKDAFETGRGRIILRGKAEI 248 Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKN 317 EV I++TEIPY V K+ LI+ IA+L+ KRI + ++ DES +RIV+ K Sbjct: 249 -EVENNHEKIIITEIPYLVNKAELIKYIADLVNEKRIDGISNVNDESDRSGMRIVVDVK- 306 Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377 R + +++ ++ L+ +++ F +N L GR P+++ L ++K ++ HR EV+ RR+ Sbjct: 307 RDANSSVVLNKLYKLTALQSSFSVNNIALVNGR-PRLLNLKDLIKAFVEHRHEVVIRRTK 365 Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVDAILNL 434 + ++ + R IL+GL+IA NIDE+IAII++ P+ ++ RFSL+E Q AI+ + Sbjct: 366 YELRKAEERAHILEGLIIASDNIDEVIAIIKSSKSPQEAIERLIERFSLSELQARAIVEM 425 Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494 RLR L LE+ ++++E + + ++ +L + I E+ E+K+ F G Sbjct: 426 RLRQLTGLEQDKLRAEYEEIEKLIAYLNEILENEDLCMKVIKDELLEIKDKF------GD 479 Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFK 546 R T ++ A + + + + + +S+ G+I R+ V + Sbjct: 480 ERKT--DIVYASEELNPEDFYADDEMIITVSHMGYIKRTPLSEFRAQGRGGVGAKGSETR 537 Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQDIVT 604 + D ++ A +L + GK Y L + G G AIQ L+++ + D V Sbjct: 538 DEDFVEYIYPASMHATLLFFTAKGKCYWLKVFEIPEGAKNAKGRAIQNLLNIEPD-DKVQ 596 Query: 605 AFV----------YDSTCKLLVVSSKGNAFIVEESEIIANTR---KGKTFLKVSSEEKMK 651 AF+ + ++ LL + KG +++++ + A +R G + + ++ + Sbjct: 597 AFIRVKKLTTDTEFINSHYLLFCTKKG---VIKKTLLEAYSRPRQNGVNAITLREDDGLI 653 Query: 652 LVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSRG----KGVRLQSYKDGGISDVICFKIC 706 V G++ V + N + + F + M R KG+ L + +IC K Sbjct: 654 QVCMTNGNNEVIIANRNGRAIRFHESAVRVMGRTASGVKGMTLDEDNTDEVVGMICIKDK 713 Query: 707 EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752 E T + + + Y + + + RGG G ++GK ++ Sbjct: 714 EKETVLVVSEQGYGKRSSIEDYRITNRGGKGVKTINITEKTGKLVA 759 >gi|227822110|ref|YP_002826081.1| DNA gyrase subunit A [Sinorhizobium fredii NGR234] gi|227341110|gb|ACP25328.1| DNA gyrase subunit A [Sinorhizobium fredii NGR234] Length = 927 Score = 389 bits (998), Expect = e-105, Method: Compositional matrix adjust. Identities = 235/679 (34%), Positives = 372/679 (54%), Gaps = 61/679 (8%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 ++ +S+ ++ YL YA+S I RA+PD+RDG KPVHRRI++ MSE+G+D+ + K A Sbjct: 16 IEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYGMSELGIDWNKKYVKCA 75 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+ G+V+GK HPHG+ ++YD+L R+AQ + R PLI GQGNFG++DGD AA RYTE R+ Sbjct: 76 RVTGDVMGKYHPHGNMAIYDALARMAQDWSLRLPLIDGQGNFGSVDGDPPAAERYTECRL 135 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 + A +L +D++ VDFRD Y+ EPVV P+KFPNLL NG GIAVGMAT+IP HN+ Sbjct: 136 QKAAHSLLDDLDKETVDFRDNYDGTLQEPVVVPAKFPNLLVNGAGGIAVGMATNIPPHNL 195 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ +ALID+P I + +L++ + GPDFPTG +I+ R I ++Y GRG +R R Sbjct: 196 SEVINGCIALIDDPAIELPELMQIVPGPDFPTGALIL-GRAGIRQAYETGRGSVIMRGRA 254 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316 +E + I++TEIPYQV K+ +IEK+AEL+ KRI + D+RDES V+ Sbjct: 255 HIEPMRGDREQIIITEIPYQVNKATMIEKMAELVRDKRIEGISDLRDESDRQGYRVVIEL 314 Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376 R + ++++ ++ + ++T F NM L+ G+ Q+ LD +L+ ++A R EV+ RR+ Sbjct: 315 KRDANAEVILNQLYRYTPLQTSFGCNMVALNGGKPEQLTLLD-MLRAFVAFREEVVSRRT 373 Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP----VMVSR------------ 420 + ++ R +L GL IA NIDE+I +IR+ P+ +M R Sbjct: 374 KYLLRKARERAHVLVGLAIAVANIDEVIKLIRHAPDPQTAREQLMERRWPAHDVDALIRL 433 Query: 421 -------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467 ++L+E Q AIL+LRL+ L L +I EL+ + E +L+S Sbjct: 434 IDDPRHRINDDGTYNLSEEQARAILDLRLQRLTALGRDEIGDELNKIGEEIRDYLEILSS 493 Query: 468 GKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNR 527 + + E+ V++ F RRT E++ + +I +E + V +S+ Sbjct: 494 RLRIMQIVKDELAAVRDEFGTP-----RRT---EIAEGGPDMDDEDLIAQEDMVVTVSHL 545 Query: 528 GWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYT 574 G+I R+ + S + ++ D + A+T +L S+ G K + Sbjct: 546 GYIKRVPLTTYRAQRRGGKGRSGMSTRDEDFVTRLFVANTHTPVLFFSSRGIVYKEKVWR 605 Query: 575 LPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD------STCKLLVVSSKGNAFIVEE 628 LP G S G+A+ ++ L H + I T ++ +++G + Sbjct: 606 LPIGTPQS---RGKALINMLPLEHGERITTIMPLPEDEATWENLDVMFSTTRGTVRRNKL 662 Query: 629 SEIIANTRKGKTFLKVSSE 647 S+ + R GK +K+ E Sbjct: 663 SDFVQVNRNGKIAMKLEEE 681 >gi|116689063|ref|YP_834686.1| DNA gyrase subunit A [Burkholderia cenocepacia HI2424] gi|116647152|gb|ABK07793.1| DNA gyrase subunit A [Burkholderia cenocepacia HI2424] Length = 867 Score = 389 bits (998), Expect = e-105, Method: Compositional matrix adjust. Identities = 235/620 (37%), Positives = 347/620 (55%), Gaps = 70/620 (11%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 SL + YL YA+S I RA+PD+RDG KPVHRR++ AM E+ D+ A+KKSARIV Sbjct: 11 TSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRAYKKSARIV 70 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGD +VYD++VR+AQ F RY LI GQGNFG+IDGD+AAA RYTE RM ++ Sbjct: 71 GDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLIDGQGNFGSIDGDNAAAMRYTEIRMAKI 130 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 +L +D++ VDF Y+ + +P V PS+ PNLL NG+SGIAVGMAT+IP HN+ E+ Sbjct: 131 GHELLADIDKETVDFEPNYDGNEMQPSVLPSRIPNLLINGSSGIAVGMATNIPPHNLNEV 190 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 +A L+ NPE +I++L+E I PDFPT GII + + YR GRG +RA E Sbjct: 191 VDACQHLLGNPEATIDELIEIIPAPDFPTAGIIY-GVAGVRDGYRTGRGRVVMRAATHFE 249 Query: 260 EVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318 E+ RG I+V E+PYQV K L+E+IAEL+ K++ + DIRDES + V+ R Sbjct: 250 EIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKR 309 Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378 P++++ +++ + ++ F +NM L G+ P+++ L IL+ +L+HRREVL RR+ + Sbjct: 310 GEVPEVVLNNLYKATQLQDTFGMNMVALVDGQ-PKLLNLKEILQCFLSHRREVLTRRTIY 368 Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---------KP-------VMVSR-- 420 ++ R +L+GL +A NIDE IAII+ P KP M++R Sbjct: 369 ELRKARERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMAKPWDSSLVREMLTRAE 428 Query: 421 ----------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELD 452 + L++ Q IL +RL+ L LE+ +I E Sbjct: 429 SENAAAGGRSAYRPEGLNPAFGMQTDGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEYR 488 Query: 453 NLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ 512 +++A+ + +L ++ I E+ VK F G R + E++ + T + Sbjct: 489 DVMAQIADLLDILARPERITTMIGDELTSVKAEF------GDARRSKIELNATELNT--E 540 Query: 513 AMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRIL 564 +I + + V +S+ G++ R+ K A KE D ++ A+T D IL Sbjct: 541 DLITPQDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYIL 600 Query: 565 LLSTDG-----KAYTLPAGN 579 S G K Y +P G+ Sbjct: 601 CFSNRGRVYWVKVYEVPQGS 620 >gi|241204655|ref|YP_002975751.1| DNA gyrase subunit A [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240858545|gb|ACS56212.1| DNA gyrase, A subunit [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 945 Score = 389 bits (998), Expect = e-105, Method: Compositional matrix adjust. Identities = 245/712 (34%), Positives = 382/712 (53%), Gaps = 63/712 (8%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 ++ +S+ ++ YL YA+S I RA+PD+RDG KPVHRRI++ MSE+G+D+ + K A Sbjct: 16 IEPISIMEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYGMSELGIDWNKKYVKCA 75 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+ G+V+GK HPHG+ ++YD+L R+AQP+ R PLI GQGNFG++DGD AA RYTE R+ Sbjct: 76 RVTGDVMGKFHPHGNSAIYDALARMAQPWSLRLPLIDGQGNFGSVDGDPPAAERYTECRL 135 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 + A +L +D++ VDFRD Y+ SEPVV P+KFPNLL NG GIAVGMAT+IP HN+ Sbjct: 136 EKAAHSLLDDLDKETVDFRDNYDGTLSEPVVVPAKFPNLLVNGAGGIAVGMATNIPPHNL 195 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ + +ALID+P I + +L++ I GPDFPTG I+ R I +Y GRG +R Sbjct: 196 SEVIDGCIALIDDPAIELPELIQIIPGPDFPTGAKIL-GRAGIRSAYETGRGSVIMRGVA 254 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316 +E + I++TEIPYQV K+ +IEK+AEL+ KRI + D+RDES V+ Sbjct: 255 AIEPMRGDREQIIITEIPYQVNKATMIEKMAELVRDKRIEGISDLRDESDRQGYRVVVEL 314 Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376 R + D+++ ++ + ++T F NM L+ G+ Q+ LD +L+ +++ R EV+ RR+ Sbjct: 315 KRDANADVILNQLYRYTPLQTSFGCNMVALNGGKPEQLTLLD-MLRAFVSFREEVVSRRT 373 Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP----VMVSR------------ 420 F ++ R +L GL IA NIDE+I +IR P+ +M R Sbjct: 374 KFLLRKARDRAHVLVGLAIAVANIDEVIRVIRQAPDPQSAREELMTRRWPAEDVESLIRL 433 Query: 421 -------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467 ++L+E Q AIL LRL L L +I EL+ + E + +L+S Sbjct: 434 IDDPRHRINEDLTYNLSEEQARAILELRLARLTALGRDEIGDELNKIGEEIKDYLDILSS 493 Query: 468 GKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNR 527 + + E+ V++ F RRT E+ + +I +E + V +S+ Sbjct: 494 RVRIQTIVKDELLAVRDEFGTP-----RRT---EIVDGGLEMDDEDLIAREDMVVTVSHL 545 Query: 528 GWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYT 574 G+I R+ + S + ++ D + +T +L S+ G K + Sbjct: 546 GYIKRVPLTTYRAQRRGGKGRSGMTTRDADFVSRLFVVNTHTPVLFFSSRGIVYKEKVWR 605 Query: 575 LPAGNLLSGRGHGEAIQLLIDLNHNQDIVT--AFVYDSTC----KLLVVSSKGNAFIVEE 628 LP G S G+A+ ++ L + I T D T ++ +++G + Sbjct: 606 LPIGTPTS---RGKALINMLPLAPGERITTILPLPEDETSWDNLDVMFSTTRGTVRRNKL 662 Query: 629 SEIIANTRKGKTFLKVSSEEKMKLVVKVT--GDHVAVVGENRKLLIFSIDQI 678 S+ + R GK +K+ E L V+ D V + + + FS+D + Sbjct: 663 SDFVQVNRNGKIAMKLEEEGDEILSVETCTENDDVLLTTALGQCIRFSVDDV 714 >gi|240047185|ref|YP_002960573.1| DNA gyrase subunit A [Mycoplasma conjunctivae HRC/581] gi|239984757|emb|CAT04731.1| DNA gyrase subunit A [Mycoplasma conjunctivae] Length = 867 Score = 389 bits (998), Expect = e-105, Method: Compositional matrix adjust. Identities = 230/683 (33%), Positives = 385/683 (56%), Gaps = 33/683 (4%) Query: 30 YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89 +L Y++S I RA+PD+RDG KPVHRRI++ MSE+G+ +A+KKSARIVG+V+GK HPH Sbjct: 78 FLDYSMSVIISRALPDVRDGLKPVHRRILYTMSELGIVHNSAYKKSARIVGDVLGKYHPH 137 Query: 90 GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDE 149 GD SVYDS+VR+AQPF RYPL+ G GNFG+IDGD AAA RYTEARM+++A L+++G+ + Sbjct: 138 GDTSVYDSMVRMAQPFSLRYPLVDGHGNFGSIDGDEAAAMRYTEARMSKIASLMVEGIKK 197 Query: 150 DAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDN 209 + VDF Y+ + EP V P +FPNLL +G SGIAVGMAT IP HN+ E+ + + L N Sbjct: 198 NTVDFIPNYDGSEQEPNVLPVRFPNLLVSGVSGIAVGMATKIPPHNLTEVINSFILLAKN 257 Query: 210 PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIV 269 +IS+E+L + + GPDFPTG I I ++Y+ GRG F +RA+ +E G I+ Sbjct: 258 NDISVEELAQSLPGPDFPTGATIF-GVSGIQQAYKTGRGSFILRAKAKIETFNSGKSKII 316 Query: 270 VTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESI 329 EIPY+V+K +IEK+ +L+ KR+ ++D+RDE+ V+F + +P++++ + Sbjct: 317 FYEIPYEVKKPAIIEKVVQLVKEKRLQGIKDVRDETNRQGIRVVFEIKKGFNPEIILNQL 376 Query: 330 FMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEI 389 + +D + + +NM + G P+++ L IL ++L H++E+ R +F ++ ++ + Sbjct: 377 YKETDFQISYSMNMLAIVKGE-PKLLNLKEILYQYLLHQKEINLRGLNFDLEKYKEKLNV 435 Query: 390 LKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQ 446 L G+ +A NIDE++ II+ ++ + + + RF L Q AI+++RL L L + Sbjct: 436 LLGVKVAVENIDEVVKIIKSSSSDAQAQEKLGKRFDLNPIQTKAIVDMRLGRLTSLAIEK 495 Query: 447 IKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRAD 506 + +E++ + AE +I+ ++ S ++ + I + EI + D R E++ Sbjct: 496 LMTEIEQIKAEINRIEEIIASDEK---LVQLVIDQHLEIINNFADPRR-----SEINGEI 547 Query: 507 KATLQQAMIEKEPITVVISNRGWIRSLKSH--------SVDLSALHFKEGDSLKIALHAH 558 + + +I + + + +++ +++ + V S + D LK A+ Sbjct: 548 GNIIDEDLIPRSDVIISLTDNNYVKRINLEEYRVQNRGGVGSSTSSLYKDDYLKGIWFAN 607 Query: 559 TTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL--LIDLNHNQDIVTAFVY--DSTCKL 614 T +L++++ K + L + G+ I L+ + ++ I T V+ D Sbjct: 608 THTDLLIITSKAKIFKLRTHQIPDSTKQGKGIPFVNLLPIEKDEQIYTLLVWNQDYAHHF 667 Query: 615 LVVSSKGNAFIVEESEIIANTRK-GKTFLKVSSEEKM--KLVVKVTGDHVAVVGENR-KL 670 LV S+ E N K GK LK++ + + +VK ++G + K+ Sbjct: 668 LVTVSRLGLIKKTPLEFYKNINKNGKYALKLNENDTLVSAFIVKENEPCEVLIGSSSGKV 727 Query: 671 LIFSIDQIPEMSR----GKGVRL 689 F D I R KG++L Sbjct: 728 NKFDFDSIRSTGRVAMGVKGIKL 750 >gi|256851679|ref|ZP_05557067.1| DNA gyrase, A subunit [Lactobacillus jensenii 27-2-CHN] gi|260661604|ref|ZP_05862516.1| DNA gyrase, A subunit [Lactobacillus jensenii 115-3-CHN] gi|282934237|ref|ZP_06339514.1| DNA gyrase, A subunit [Lactobacillus jensenii 208-1] gi|297205288|ref|ZP_06922684.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus jensenii JV-V16] gi|256615637|gb|EEU20826.1| DNA gyrase, A subunit [Lactobacillus jensenii 27-2-CHN] gi|260547661|gb|EEX23639.1| DNA gyrase, A subunit [Lactobacillus jensenii 115-3-CHN] gi|281301711|gb|EFA93978.1| DNA gyrase, A subunit [Lactobacillus jensenii 208-1] gi|297149866|gb|EFH30163.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus jensenii JV-V16] Length = 825 Score = 389 bits (998), Expect = e-105, Method: Compositional matrix adjust. Identities = 218/607 (35%), Positives = 354/607 (58%), Gaps = 38/607 (6%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 ++ V L + +L YA+S I RA+PD+RDG KPV RRI++ M+E+G+ +KKSA Sbjct: 10 IRNVDLTHTMRSSFLDYAMSVIVARALPDVRDGMKPVQRRILYGMNELGVTPDKPYKKSA 69 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 RIVGEV+GK HPHGD S+Y+++ +AQ F RY LI G GNFG++DGD AA RYTEARM Sbjct: 70 RIVGEVMGKFHPHGDSSIYEAMAHMAQDFSYRYMLIDGHGNFGSVDGDRPAAMRYTEARM 129 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 +++A +L+ ++++ +D++ Y++ ++EP+V P++ P+LL NG SGIAVGM T+IP HN+ Sbjct: 130 SKIALEMLRDINKNTIDWQRNYDDTENEPLVLPARIPSLLVNGASGIAVGMTTNIPPHNL 189 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ L+ NP+ + L++ I GPDFPTGG+I+ R I+ +Y G+G VRA+ Sbjct: 190 SEVISGLHLLMKNPDATTMDLMKVIPGPDFPTGGVIM-GRSGILHAYESGKGNVVVRAKT 248 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316 +EE G I+VTEIP+ V K+ L++KIAEL K I + +RDES + Sbjct: 249 NIEEEKSGRERIIVTEIPFMVNKAMLVQKIAELARDKVIDGITGVRDESDRHGMRITIDI 308 Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376 R +++ ++F + M+T F +NM + G P + L +L+ +L H+ +V+ RR+ Sbjct: 309 RRDASASVVLNNLFKETQMQTNFGMNMVAIVNG-APHFLTLKQMLQYYLDHQEDVVRRRT 367 Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLTENQVDAILN 433 F + + R IL+GL IA +IDEI+ IIRN D K ++SRF L + Q AIL+ Sbjct: 368 KFELDKAEARAHILEGLRIALDHIDEIVNIIRNSESSDIAKATLISRFELDDKQAQAILD 427 Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493 +RL L LE +++ E +LL + +L ++ + I E+ ++++ F Sbjct: 428 MRLVRLTGLERDKVEQEYQDLLVKIADYKDILAKPERIDHIIYTELLDIQKRFGDD---- 483 Query: 494 RRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALH 544 RRT E++ ++ +++ + +IEK+ + + +++ G+I R+ + + Sbjct: 484 -RRT---EITASEVVSIEDEDLIEKQNVLLTLTHNGYIKRMPVSEFRTQNRGGRGIKGMG 539 Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLLSGRGHGEA 589 ++ D ++ ++ T D +L + GK Y+ LP NLL GE Sbjct: 540 VQDDDFIERLTYSSTHDYLLFFTNKGKVYSKKAYEIPEYSRTAKGLPIINLLQ-LDKGEK 598 Query: 590 IQLLIDL 596 IQ +I++ Sbjct: 599 IQAMINV 605 >gi|31044070|dbj|BAC76771.1| DNA gyrase A [Treponema denticola] Length = 611 Score = 389 bits (998), Expect = e-105, Method: Compositional matrix adjust. Identities = 222/593 (37%), Positives = 353/593 (59%), Gaps = 26/593 (4%) Query: 30 YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89 Y+ Y++S I RA+PD+RDG KPVHRRI+++M E GL +K A+IVG+V+G HPH Sbjct: 25 YIDYSMSVIVSRALPDVRDGLKPVHRRILYSMEEKGLRSSGPTRKCAKIVGDVLGSYHPH 84 Query: 90 GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDE 149 GD SVYD+LVRL Q F RYP+I QGNFG I GD AAYRYTEA+M ++AE +++ + + Sbjct: 85 GDASVYDALVRLGQDFSLRYPVIYPQGNFGTIGGDPPAAYRYTEAKMAKIAETMVEDIKK 144 Query: 150 DAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDN 209 + VDF +++ EP V P+KFP LLANG+SGIAVGMAT++P HN++EI +A A IDN Sbjct: 145 ETVDFIPNFDDSTKEPTVLPAKFPFLLANGSSGIAVGMATNMPPHNLREIADAVSAYIDN 204 Query: 210 PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIV 269 PEI I++L +Y+ GPDFPTGG+I R+ I ++++ GRG VR ++ +E +G IV Sbjct: 205 PEIEIDELCKYMKGPDFPTGGVIY-GRKGIKQAFKTGRGKILVRGKFTIEVDKKGKETIV 263 Query: 270 VTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE--DVRIVLFPKNRSLDPDLLME 327 TE+PYQV + L+ +I EL K I + ++ DE+++ +R+V+ K R +++ Sbjct: 264 FTEVPYQVNTTTLVSRIGELAREKIIDGIANVNDETSDRTGLRVVIELK-RGAITKVVLN 322 Query: 328 SIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRV 387 +F + +++ F + L GR P+ + L ++K ++ HR +V+ RR+ F ++ + R Sbjct: 323 QLFAKTALQSSFGVINLALVNGR-PETLNLKLLVKYFVEHRVDVVTRRTKFDLRKAEERA 381 Query: 388 EILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVDAILNLRLRSLRKLEE 444 IL+ L++A NIDE+I IIR+ P+ ++ RF + Q AI++++L+ L LE Sbjct: 382 HILEALIVAIDNIDEVIKIIRSSRDPQTAKNNLMERFGFDDVQAQAIVDMQLKRLTSLEI 441 Query: 445 YQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSR 504 ++ EL L + LL ++ I E E+ E F G R T Sbjct: 442 EDLRKELQELQVLIAHLKDLLAHPEKILALIKEETNEIAEKF------GDERKTDIVADE 495 Query: 505 ADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD--------LSALHFKEGDSLKIALH 556 ++ ++ +I+KE + ++IS+ G+I+ + + + ++++ E D L Sbjct: 496 VEELNIED-LIKKEEMVILISHLGYIKRIPATAYKSQNRGGKGSNSVNLAEDDFLDQIFT 554 Query: 557 AHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAFV 607 A T D I+ ++ GKAY L + S G I+ L+ ++ +++I TA V Sbjct: 555 ASTHDYIMFITNAGKAYWLKVHEIQEASRTSRGSHIKSLLSVSSDEEI-TAVV 606 >gi|329963590|ref|ZP_08301069.1| DNA gyrase, A subunit [Bacteroides fluxus YIT 12057] gi|328528579|gb|EGF55550.1| DNA gyrase, A subunit [Bacteroides fluxus YIT 12057] Length = 848 Score = 389 bits (998), Expect = e-105, Method: Compositional matrix adjust. Identities = 257/777 (33%), Positives = 418/777 (53%), Gaps = 57/777 (7%) Query: 12 LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71 L ++ + +++ ++ Y+ Y++S I RA+PD+RDGFKPVHRRI+ M +G Sbjct: 2 LEQDRIIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILFGMMGLGNTSDKP 61 Query: 72 FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131 +KKSARIVGEV+GK HPHGD SVY +LVR+AQP+ RY ++ GQGNFG++DGDSAAA RY Sbjct: 62 YKKSARIVGEVLGKYHPHGDSSVYGALVRMAQPWAMRYMMVDGQGNFGSVDGDSAAAMRY 121 Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191 TE R+ ++ E ++Q +D++ VD ++ +++ EP V P++ PNLL NG SGIAVGMAT++ Sbjct: 122 TECRLRKIGEDMMQDLDKETVDMQNNFDDSLQEPTVMPNRIPNLLVNGASGIAVGMATNM 181 Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251 P+HN+ E+ +A +A IDN EI IE+L+ Y+ PDFPTGG I + E+Y GRG Sbjct: 182 PTHNLSEVIDACVAYIDNNEIDIEELMNYVKAPDFPTGGYIY-GMSGVREAYLTGRGRVI 240 Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVR 310 +RA+ + E G IVVTEIPY V K+ LI+ IA+L K+I + + DES E +R Sbjct: 241 MRAKAEI-ETGSTHDKIVVTEIPYGVNKAELIKNIADLANEKKIEGIANANDESDREGMR 299 Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370 IV+ K R + +++ ++ ++ ++T F +N L GR P+++ L +++ ++ HR + Sbjct: 300 IVIDVK-RDANASVVLNKLYKMTLLQTSFGVNNVALVHGR-PRLLNLKDLIRYFIEHRHD 357 Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQ 427 V+ RR+ + ++ R IL+GL+IA NIDE+I IIR P ++ RF LTE Q Sbjct: 358 VVIRRTQYDLRKAKERAHILEGLIIASDNIDEVIKIIRAAKTPNDAITGLMERFQLTEIQ 417 Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487 AI+ +RLR L L + Q+ +E + + + ++ +L + + I E+ EVKE + Sbjct: 418 SRAIVEMRLRQLTGLMQDQLHAEYEEIQKQIAYLEEILVNDELCRKVIKDELVEVKEKYG 477 Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVD 539 RR+ E+ + + + + + + IS+ G+I R+ V Sbjct: 478 DE-----RRS---EIVYSSEEFNPEDFYADDEMIITISHMGYIKRTPLSEFRAQNRGGVG 529 Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLN 597 ++ D ++ A + ++ + GK Y L + G G AIQ L++++ Sbjct: 530 SRGTDTRDEDFIEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTKNSKGRAIQNLLNID 589 Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG---KTFLKVSSEEKMKLVV 654 + D V A+ L V + + + ++ T+ G KT L+ S + V Sbjct: 590 SD-DAVNAY--------LRVKNLNDQEFINSHYVVFCTKNGVIKKTLLEQYSRPRQNGVN 640 Query: 655 KVT--------------GDH-VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGIS 698 +T GD+ + + N + + F + M R GVR + + G Sbjct: 641 AITIREDDRVIEVRMTNGDNEIIIANRNGRAIRFHESAVRVMGRTATGVRGMTLDEDGQD 700 Query: 699 DV---ICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752 +V IC K + T + + + Y + + RGG G ++GK ++ Sbjct: 701 EVVGMICIKDPDTETIMVVSEQGYGKRSDIEDYRKTNRGGKGVKTMNITDKTGKLVT 757 >gi|160900151|ref|YP_001565733.1| DNA gyrase subunit A [Delftia acidovorans SPH-1] gi|151500324|gb|ABS12103.1| DNA gyrase A subunit [Delftia acidovorans] gi|160365735|gb|ABX37348.1| DNA gyrase, A subunit [Delftia acidovorans SPH-1] Length = 888 Score = 388 bits (997), Expect = e-105, Method: Compositional matrix adjust. Identities = 232/620 (37%), Positives = 356/620 (57%), Gaps = 67/620 (10%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 +SL + YL YA+S I RA+PD RDG KPVHRR++ AM E+ D+ +KKSARIV Sbjct: 11 ISLEEEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHELNNDWNRPYKKSARIV 70 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGD +VYD++VR+AQ F R+ L+ GQGNFG++DGDSAAA RYTE R++++ Sbjct: 71 GDVIGKYHPHGDSAVYDTIVRMAQDFSLRHMLVDGQGNFGSVDGDSAAAMRYTEIRLSKI 130 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 + +L +D++ VD+ Y+ + EP+V P++ PNLL NG+SGIAVGMAT+IP HN+ E+ Sbjct: 131 SHEMLGDIDKETVDYGPNYDGSEREPLVLPARLPNLLVNGSSGIAVGMATNIPPHNLNEV 190 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 +A L L+ P+ +I++L+E I PDFPT GII + E YR GRG +RA+ E Sbjct: 191 VDACLHLLQTPQATIDELMEIIPAPDFPTAGIIY-GINGVKEGYRTGRGRVVMRAKCHFE 249 Query: 260 EVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318 ++ RG I+V E+PYQV K L E++AEL+ K+I + I+DES + ++ R Sbjct: 250 DIDRGQRQAIIVDELPYQVNKKTLQERMAELVHEKKIEGISHIQDESDKSGMRLVIELKR 309 Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378 P++++ +++ L+ ++ F +NM L G+ P++ L +++ +L HRREV+ RR+ + Sbjct: 310 GEVPEVVLNNLYKLTQLQDTFGMNMVALVDGQ-PKLCNLKDLVEVFLQHRREVVTRRTVY 368 Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV-----------------MVSR- 420 ++ R +L+GL +A NID+ IAIIRN P PV M++R Sbjct: 369 ELRKARERGHVLEGLAVALANIDDFIAIIRNAPTP-PVAKAELMTRNWDSKLVREMLTRT 427 Query: 421 ----------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELD 452 + L+E Q IL +RL+ L LE+ +I +E Sbjct: 428 RTDGGVVNADDYRPDGLEREFGMQADGLYRLSETQAQEILQMRLQRLTGLEQDKIVAEYK 487 Query: 453 NLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ 512 ++++ E + +L+ ++ I E++++K F +S +G RR+T E S D +T + Sbjct: 488 DVMSVIEDLLDILSKPERVSAIIGDELKQIKAEFGQSK-VGARRST-VEYSAQDLST--E 543 Query: 513 AMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRIL 564 +I + V +S+ G+I RS K A KE D + A+T D +L Sbjct: 544 DLITPTDMVVTLSHTGYIKSQPLSEYRSQKRGGRGKQATATKEDDWIDQLFIANTHDYLL 603 Query: 565 LLSTDGKAYTL-----PAGN 579 S G+ Y L PAG+ Sbjct: 604 CFSNRGRLYWLKVWEVPAGS 623 >gi|167463190|ref|ZP_02328279.1| DNA topoisomerase IV subunit A [Paenibacillus larvae subsp. larvae BRL-230010] gi|322381895|ref|ZP_08055849.1| DNA topoisomerase IV subunit A-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321154283|gb|EFX46605.1| DNA topoisomerase IV subunit A-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 817 Score = 388 bits (997), Expect = e-105, Method: Compositional matrix adjust. Identities = 238/685 (34%), Positives = 394/685 (57%), Gaps = 26/685 (3%) Query: 28 ERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLH 87 +R+ Y+ I++RAIPD+RDG KPV RRI++AM + G ++KSA+ VG+V+G H Sbjct: 16 DRFGRYSKYIIQDRAIPDVRDGLKPVQRRILYAMYDAGNTPDKPYRKSAKTVGDVMGNYH 75 Query: 88 PHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGV 147 PHGD S+Y+ +VR+AQP+ Y LI G GN+G+ D D AAA RYTEAR++++A +L+ + Sbjct: 76 PHGDASIYEGMVRMAQPWKMGYVLIDGHGNWGSQDDDPAAAMRYTEARLSEIAMELLRDI 135 Query: 148 DEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALI 207 ++ V F+D ++ EPVV PS+FPNLL NG SGI+ G AT IP+HN++E+ +A +A++ Sbjct: 136 EKRTVLFKDNFDNTAKEPVVLPSRFPNLLVNGASGISSGFATEIPTHNLREVIDACVAMM 195 Query: 208 DNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWC 267 D PE+++E+L+ I GPDFPTGGII+ E I ++Y G+G VRA+ +E V G Sbjct: 196 DQPEMTVEQLMGIIKGPDFPTGGIIM-GEEGIKDAYTSGKGRIYVRAKTSIESVRGGRQQ 254 Query: 268 IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKNRSLDPDLLM 326 I+VTEIPYQV KSRL+ I + + K++ + ++RDES D +RIV+ K + D ++ Sbjct: 255 IIVTEIPYQVVKSRLVTAIENIRLDKKVEGISEVRDESGRDGLRIVVDLK-KDADAQGIL 313 Query: 327 ESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRR 386 + +D++ + NM V + + P+ + + +L+ ++ H+++V+ R+ + ++ + R Sbjct: 314 AYLLKKTDLQVTYNFNM-VAIVNKTPKQLGIREMLQAYIDHQKDVVIHRTQYDLEKAEDR 372 Query: 387 VEILKGLLIAYLNIDEIIAII---RNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLE 443 +L+GL+ A +DEII I +N + +V +++ TE Q DAIL L+L L LE Sbjct: 373 AHVLEGLVKALNILDEIIETIKASKNRQDAQNNLVEKYAFTERQADAILTLQLYRLTNLE 432 Query: 444 EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVS 503 ++ EL++++ + + S+L S K+ N I E+ E+++ + + RR EV Sbjct: 433 VTSLEKELNDIMKKITHLCSILESPKKLANVIKKEMIEIRDKYG----IDRRSEIQGEVE 488 Query: 504 RADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSVDLSALH---FKEGDSLKIALHAH 558 K L + M+ E + V +S G+I+ S+ S++ LH KEGD ++ L + Sbjct: 489 EL-KVNL-EVMVTPEDVLVTLSQDGYIKRVSILSYTRSGGELHTTGLKEGDFVRHLLEVN 546 Query: 559 TTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAF----VYDSTC 612 T D +L+ + G+ + LP + + +G AI +I ++ IV +S Sbjct: 547 TIDSLLIFTNRGQYFLLPVHQIPEYKWKDNGTAIVNVIPMSKEDRIVNVIPVKNFEESGK 606 Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS-SEEKMKLVVKVTGDHVAVVGENRKLL 671 L+ V+ KG E E + KV +E +++ V + + +V + + Sbjct: 607 SLVFVTKKGQVKRTELKEYMTKRSTAVVACKVGDGDEVIQVEVSESNKDLLLVTKQGMSI 666 Query: 672 IFSIDQIPEMSRGK-GVRLQSYKDG 695 F D++ M R GVR KDG Sbjct: 667 RFREDEVNPMGRAAGGVRGIQLKDG 691 >gi|163793160|ref|ZP_02187136.1| Type IIA topoisomerase , A subunit [alpha proteobacterium BAL199] gi|159181806|gb|EDP66318.1| Type IIA topoisomerase , A subunit [alpha proteobacterium BAL199] Length = 927 Score = 388 bits (997), Expect = e-105, Method: Compositional matrix adjust. Identities = 242/723 (33%), Positives = 396/723 (54%), Gaps = 62/723 (8%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 ++ VS+ + YL YA+S I RA+PD+RDG KPVHRRI++AM G D+ ++KS Sbjct: 10 DIAPVSIEDEMRRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYAMKVGGYDWTRPYRKS 69 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 ARIVG+V+G+ HPHGD ++YD++VR+AQ F R PL+ GQGNFG++DGD AA RYTEAR Sbjct: 70 ARIVGDVMGQYHPHGDSAIYDAMVRMAQDFSMRLPLVDGQGNFGSMDGDPPAAMRYTEAR 129 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 + + AE +L+ +D++ VD+ Y+E EP V P+++PNLL NG GIAVGMAT+IP HN Sbjct: 130 LAKAAEGLLRDIDKETVDYIPNYDETTEEPSVLPAEYPNLLVNGAGGIAVGMATNIPPHN 189 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 + E+ +A LA++DNP I+I++L+ + GPDFPTGG+I+ R I E+Y GRG +R R Sbjct: 190 LGEVVDACLAMLDNPGITIDELIALVPGPDFPTGGLIL-GRSGIREAYHTGRGSVVMRGR 248 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314 +EE+ + + IVVTEIPYQV KS+L+E+I E++ K + + D+RDES D VR+V+ Sbjct: 249 AEIEEIRKDRFAIVVTEIPYQVNKSKLMERIGEVVRDKTVEGISDLRDESDRDGVRVVVE 308 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K ++ ++++ ++ + ++T F +NM L+ GR P M L ++ ++ R EV+ R Sbjct: 309 LKRDAIG-EVVLNQLYRYTQLQTSFGVNMLALNRGR-PVQMNLRDVIFAFVEFREEVITR 366 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE------------------------ 410 R+ F + R +L GL++A N+D +IA+IR+ Sbjct: 367 RTRFLLHKARERAHVLAGLMVAINNLDAVIAMIRSAPDAGEARRKLCAAAWPATDVIDFI 426 Query: 411 ---DKPKPVMVSR--FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLL 465 D P + + L++ Q AIL+LRL+ L +E ++ E ++ A + +L Sbjct: 427 AIIDDPGHRVTDEGTYQLSDAQARAILDLRLQRLTGMERSKLVDEATDIAARIKDYLDIL 486 Query: 466 NSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVIS 525 S + + E+ + +E ++ RRT E+ ++ + +I +E + V +S Sbjct: 487 TSRPRLMGVLRDELLQTREAWAND-----RRT---EIMESEFEHDIEDLIAREDMVVTVS 538 Query: 526 NRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPA 577 G+I R+ K + + ++ D + A++ IL ++ G+ Y L Sbjct: 539 YSGYIKRVPLATYRAQKRGGKGRAGMATRDEDWVHRLYVANSHSPILFFTSRGQVYQLKT 598 Query: 578 GNLLSG--RGHGEAIQLLIDLNHNQDIVTAFVYDST------CKLLVVSSKGNAFIVEES 629 L G + G + L+ L + I T + ++ ++ G S Sbjct: 599 YRLPEGTPQSRGRPMVNLLPLEEGEWIQTVMPMPADESSWDGLHVMFATAAGTIRRNALS 658 Query: 630 EIIANTRKGKTFLKVSSEEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQIPEMSRGK--- 685 + R GK +K+ +++ V+ GD V + + K + F + + + RG+ Sbjct: 659 DFTNINRAGKRAMKLDEGDRLIAVMPCNEGDDVLLAARSGKAIRFQVADV-RLFRGRDSL 717 Query: 686 GVR 688 GVR Sbjct: 718 GVR 720 >gi|291294835|ref|YP_003506233.1| DNA gyrase A subunit [Meiothermus ruber DSM 1279] gi|290469794|gb|ADD27213.1| DNA gyrase, A subunit [Meiothermus ruber DSM 1279] Length = 806 Score = 388 bits (997), Expect = e-105, Method: Compositional matrix adjust. Identities = 243/737 (32%), Positives = 399/737 (54%), Gaps = 41/737 (5%) Query: 26 LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85 +++ ++ YA+S I +RA+PD+RDG KPV RRI++ + G+ K A+IVGEV+GK Sbjct: 13 VKQSFINYAMSVIVDRALPDVRDGLKPVQRRILYGAYQDGVLPSRKHVKCAKIVGEVMGK 72 Query: 86 LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145 HPHGD ++YD+LVRLAQP+ RYPLI GQGNFG++DGD AA RYTEAR++ + +LQ Sbjct: 73 FHPHGDAAIYDTLVRLAQPWNLRYPLIDGQGNFGSVDGDPPAAQRYTEARLSNIGLELLQ 132 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 +D++ V F Y+ +P V P+ PNLL NG++GIAVGMATS+P HN+ E+ +A + Sbjct: 133 DLDKETVPFVPNYDGTQEQPEVLPAALPNLLVNGSAGIAVGMATSLPPHNLGEVVDALVL 192 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265 +IDNPE+++E++++ + GPDFPTG + SR I E+Y GRG +VRAR E+ G Sbjct: 193 MIDNPEVTLEEVMKVLPGPDFPTGAKL--SRRGIKEAYATGRGSLKVRARVRNED-KNGR 249 Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325 +V TEIPYQV K+ LI +IA L+ K I + +RDES + R +P ++ Sbjct: 250 AMLVFTEIPYQVNKADLIAQIASLVRNKVIDEIAALRDESDRQGMRIAVELKRGANPQVV 309 Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385 + ++ S ++T F +N+ + G P+V+ L +++ +L HR V+ +R+ + ++ Sbjct: 310 LNKLYKHSRLQTSFTVNLLAIVKGE-PKVLTLLELMRHYLDHRGLVVRKRTEYELRKARE 368 Query: 386 RVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAILNLRLRSLRKL 442 R +L+GLLIA +IDE+IA+IR + + ++ RFSLTE Q AIL++RL+ L L Sbjct: 369 RAHVLEGLLIALDHIDEVIALIRGSQDAAEARAGLMGRFSLTEVQAQAILDMRLQRLVGL 428 Query: 443 EEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEV 502 E ++++E L+ E +++++L K+ W + E+ +K+ + +RRT E Sbjct: 429 ERDKLQAEYRELMEEIGRLEAILGDEKRLWRVVRDELLAIKDKYGD-----QRRTQITEF 483 Query: 503 SRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIA 554 ++ + +IE EP+ + ++++G++ R+ + A KE D Sbjct: 484 ---EEGFSLEDLIEDEPMVITLTSQGFVKRTPLEAYRAQGRGGMGAQAGKTKEEDEAISV 540 Query: 555 LHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAF-VYDST 611 A D +L+ + G+ Y L S + G I L+ L +++ V D T Sbjct: 541 FVASMHDTLLIFTNRGRVYGEKVHELPEASRQARGTHIVSLLPLQEGEEVAALLNVRDLT 600 Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV---VKVTGDHVAVVGENR 668 + V + N I + + ++ E LV + GD V + ++ Sbjct: 601 QEGYFVFATKNGLIKKTEIKEYQNLSSAGLIAINLLENDALVGVAIAQEGDQVMLATQSG 660 Query: 669 KLLIFSIDQIPEMSRGK----GVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNR--- 721 + + F + + R G+R + +D + ++ E + Y + Sbjct: 661 QAIRFELSDVRATGRASQGVTGIRFKEGRDDRVVSLVILPKGEESEVLAVGSHGYGKRTP 720 Query: 722 -SENDLLGWLGKRGGVG 737 SE L G RGG+G Sbjct: 721 ISEYPLQG----RGGMG 733 >gi|298375677|ref|ZP_06985634.1| DNA gyrase, A subunit [Bacteroides sp. 3_1_19] gi|298268177|gb|EFI09833.1| DNA gyrase, A subunit [Bacteroides sp. 3_1_19] Length = 870 Score = 388 bits (997), Expect = e-105, Method: Compositional matrix adjust. Identities = 251/766 (32%), Positives = 423/766 (55%), Gaps = 49/766 (6%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 +++ ++ Y+ Y++S I RA+PD+RDGFKPVHRRI+ M+E+G +KKSARIV Sbjct: 10 INIEEEMKSAYIDYSMSVIVSRALPDVRDGFKPVHRRILFGMNELGNTSDKPYKKSARIV 69 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 GEV+GK HPHGD SVY ++VR+AQ + RYPL+ GQGNFG++DGDS AA RYTEAR++++ Sbjct: 70 GEVLGKYHPHGDSSVYFAMVRMAQTWSMRYPLVDGQGNFGSVDGDSPAAMRYTEARLSKL 129 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 AE +L+ +D+D VDF+ +++ EP V P++ PNLL NG SGIAVGMAT++P+HN+ E+ Sbjct: 130 AEEMLRDIDKDTVDFQLNFDDTLKEPTVLPTRVPNLLVNGGSGIAVGMATNMPTHNLSEV 189 Query: 200 CEAALALID-NPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258 + +A ID +I +E L++YI PDFPTG I + +++ GRG +R + + Sbjct: 190 LDGCIAYIDAKGDIEVEGLMQYIKAPDFPTGATIY-GYAGVKDAFETGRGRIILRGKAEI 248 Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKN 317 EV I++TEIPY V K+ LI+ IA+L+ KRI + ++ DES +RIV+ K Sbjct: 249 -EVENNHEKIIITEIPYLVNKAELIKYIADLVNEKRIDGISNVNDESDRSGMRIVVDVK- 306 Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377 R + +++ ++ L+ +++ F +N L GR P+++ L ++K ++ HR EV+ RR+ Sbjct: 307 RDANSSVVLNKLYKLTALQSSFSVNNIALVNGR-PRLLNLKDLIKAFVEHRHEVVIRRTK 365 Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVDAILNL 434 + ++ + R IL+GL+IA NIDE+IAII++ P+ ++ RFSL+E Q AI+ + Sbjct: 366 YELRKAEERAHILEGLIIASDNIDEVIAIIKSSKSPQEAIERLIERFSLSELQARAIVEM 425 Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494 RLR L LE+ ++++E + + ++ +L + I E+ E+K+ F G Sbjct: 426 RLRQLTGLEQDKLRAEYEEIEKLIAYLNEILENEDLCMKVIKDELLEIKDKF------GD 479 Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFK 546 R T ++ A + + + + + +S+ G+I R+ V + Sbjct: 480 ERKT--DIVYASEELNPEDFYADDEMIITVSHMGYIKRTPLSEFRAQGRGGVGAKGSETR 537 Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQDIVT 604 + D ++ A +L + GK Y L + G G AIQ L+++ + D V Sbjct: 538 DEDFVEYIYPASMHATLLFFTAKGKCYWLKVFEIPEGAKNAKGRAIQNLLNIEPD-DKVQ 596 Query: 605 AFV----------YDSTCKLLVVSSKGNAFIVEESEIIANTR---KGKTFLKVSSEEKMK 651 AF+ + ++ LL + KG +++++ + A +R G + + ++ + Sbjct: 597 AFIRVKKLTTDTEFINSHYLLFCTKKG---VIKKTLLEAYSRPRQNGVNAITLREDDGLI 653 Query: 652 LVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSRG----KGVRLQSYKDGGISDVICFKIC 706 V G++ V + N + + F + M R KG+ L + +IC K Sbjct: 654 QVCMTNGNNEVIIANRNGRAIRFHESAVRVMGRTASGVKGMTLDEDNTDEVVGMICIKDK 713 Query: 707 EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752 E T + + + Y + + + RGG G ++GK ++ Sbjct: 714 EKETVLVVSEQGYGKRSSIEDYRITNRGGKGVKTINITEKTGKLVA 759 >gi|182435482|ref|YP_001823201.1| DNA topoisomerase IV subunit A [Streptomyces griseus subsp. griseus NBRC 13350] gi|178463998|dbj|BAG18518.1| putative A subunit of topoisomerase IV [Streptomyces griseus subsp. griseus NBRC 13350] Length = 818 Score = 388 bits (997), Expect = e-105, Method: Compositional matrix adjust. Identities = 218/535 (40%), Positives = 329/535 (61%), Gaps = 16/535 (2%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 EE + + + ++ +L YA S I RA+PD RDG KPVHRRI+ M+EMGL + Sbjct: 16 EEKILDIDVVDEMQGSFLEYAYSVIYSRALPDARDGMKPVHRRIVSQMNEMGLRPDRGYV 75 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYT 132 K AR+VGEV+GKLHPHGD S+YD+LVR+AQPF R PL+ G GNFG++ + D AA RYT Sbjct: 76 KCARVVGEVMGKLHPHGDASIYDALVRMAQPFSMRLPLVDGHGNFGSLGNDDPPAAMRYT 135 Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192 E RM L+ + +DED VDF+ Y+ ++ EPVV P+ +PNLL NG SGIAVGMAT++P Sbjct: 136 ECRMADATSLMTEAIDEDTVDFQSNYDGQEREPVVLPAAYPNLLVNGVSGIAVGMATNMP 195 Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252 HN+ E+ AA LI +P +E L+ ++ GPD PTGG IV I ++Y GRG F++ Sbjct: 196 PHNLGEVIAAARHLIKHPGADVETLMRFVPGPDLPTGGRIV-GLGGIKDAYTAGRGSFKI 254 Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD--ESAEDVR 310 RA VE V +VVTE+P+ V ++I KI +L+ AK++ + D++D + A +R Sbjct: 255 RATVAVENVTARRKGLVVTELPFTVGPEKVIAKIKDLVSAKKLQGIADVKDLTDRAHGLR 314 Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370 +V+ KN P+ ++E ++ L+ ME F +N L G+ P + L +L+ +L HR E Sbjct: 315 LVIEVKN-GFVPEAVLEQLYKLTPMEESFGINNVALVDGQ-PLTLGLKELLEVYLDHRFE 372 Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQ 427 V+ RRS FR R+ +++GLL+A L+IDE+I IIR+ D + K +++ FSL+E Q Sbjct: 373 VVRRRSEFRRTKRRDRLHLVEGLLVALLDIDEVIRIIRDSDNSAQAKERLMAHFSLSEIQ 432 Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487 IL+ LR L + + +++SE D L E + + ++L S + ++ E+ V + F Sbjct: 433 TQYILDTPLRRLTRFDRIELESERDKLSGEIDALTAILESDAELRKLVSSELAAVAKKF- 491 Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI-RSLKSHSVDLS 541 TD RRT E + A A++ + +P V++S+ G + R+ + V++S Sbjct: 492 -GTD---RRTVLLESAGAQIASVPLE-VADDPCRVLLSSTGLLARTANAEPVEIS 541 >gi|85057534|ref|YP_456450.1| DNA gyrase subunit A [Aster yellows witches'-broom phytoplasma AYWB] gi|84789639|gb|ABC65371.1| DNA gyrase subunit A [Aster yellows witches'-broom phytoplasma AYWB] Length = 835 Score = 388 bits (997), Expect = e-105, Method: Compositional matrix adjust. Identities = 234/702 (33%), Positives = 403/702 (57%), Gaps = 42/702 (5%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 ++ V+L +++ +L+YA+S I RA+PD++DG KPV RRI+++M E+G+ A++KK+A Sbjct: 22 IQEVNLSEEMKKSFLSYAMSVIVSRALPDIKDGLKPVQRRILYSMKELGVYSHASYKKAA 81 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+V+GK HPHGD S+Y+++VR+AQ F RYPL+ G GNFG+IDGD AAA RYTE +M Sbjct: 82 RVVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGHGNFGSIDGDKAAAMRYTEVKM 141 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 ++A +++ +D++ +DF D Y+ + EP+V P+ PNLL NG +GIAVGMAT IP+HN+ Sbjct: 142 AKMAMELIKNIDKETIDFVDNYDGTEKEPLVLPTALPNLLINGATGIAVGMATKIPTHNL 201 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ + + I+N +ISI++L+++I GPDFPTGG ++ +S+ +Y G+G ++A+ Sbjct: 202 GEVIDGLINYINNKDISIDELMQHIKGPDFPTGGELL-GLQSLKSAYHTGQGAVILKAKS 260 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316 V E RG I+VTEIPYQV+K+ LIEKIA L+ K + + D+RDES+ ++ Sbjct: 261 HVLE-ERGKTSIIVTEIPYQVKKTDLIEKIAFLVKNKIVEGITDLRDESSRKGMKIVIEL 319 Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376 R + +++ ++ S + F +NM L +G+ PQ++ L IL+ + R EV+ R+ Sbjct: 320 KRDANAKIILNKLYKHSQLRISFGINMVAL-VGKTPQLVSLKQILEAFFNFRIEVINRQK 378 Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVDAILN 433 SF ++ R ++ L+ +I+ I +I+ K ++ +++ E Q AIL Sbjct: 379 SFELKKASARKHLVTALITILEDIEIAIKLIKTSTDVKEAQRKLMQKYNFDEIQSKAILE 438 Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493 + L+ L E ++ +E NL E + S+++S K++ + E+ E+K+ + Sbjct: 439 MSLQRLSNQETQKLITEEKNLTQEILECKSIIDSQKKKERILEKELLEMKKKYQDD---- 494 Query: 494 RRRTTF---CEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSVDLSA 542 R+TT ++ D + +IEK+PI + I+N+G+I+S+ K +S Sbjct: 495 -RKTTLNFDAPLNFED-----EDLIEKKPIIITITNKGYIKSMDIDTYKQQKRGGQGVSG 548 Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD- 601 + E D ++ T D L + GK Y L + G+ + L+ L +D Sbjct: 549 MKIYEEDFIEHLAITSTHDYHLFFTNKGKVYQLKGYEIPLGQRQSKGSHLVNFLPFEKDE 608 Query: 602 IVTAFV----YDSTCKLLVVSSKGNAFIVEES---EIIANTRKGKTFLKVSSEEKMKLVV 654 +T+F +D + L ++K IV+++ E +++G +++ +++ V Sbjct: 609 FLTSFTSIKNFDQSQDYLFFATKKG--IVKKTPLKEYSHISKRGLIAIRLKENDEVLTVK 666 Query: 655 KVTG-DHVAVVGENRKLLIFSIDQIPEMSRGK----GVRLQS 691 K TG ++ + N + F +I +SR G+RL S Sbjct: 667 KTTGIKNIILASNNGNAICFCETKIKSISRNSMGVIGMRLGS 708 >gi|326776119|ref|ZP_08235384.1| DNA topoisomerase (ATP-hydrolyzing) [Streptomyces cf. griseus XylebKG-1] gi|326656452|gb|EGE41298.1| DNA topoisomerase (ATP-hydrolyzing) [Streptomyces cf. griseus XylebKG-1] Length = 818 Score = 388 bits (997), Expect = e-105, Method: Compositional matrix adjust. Identities = 218/535 (40%), Positives = 329/535 (61%), Gaps = 16/535 (2%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 EE + + + ++ +L YA S I RA+PD RDG KPVHRRI+ M+EMGL + Sbjct: 16 EEKILDIDVVDEMQGSFLEYAYSVIYSRALPDARDGMKPVHRRIVSQMNEMGLRPDRGYV 75 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYT 132 K AR+VGEV+GKLHPHGD S+YD+LVR+AQPF R PL+ G GNFG++ + D AA RYT Sbjct: 76 KCARVVGEVMGKLHPHGDASIYDALVRMAQPFSMRLPLVDGHGNFGSLGNDDPPAAMRYT 135 Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192 E RM L+ + +DED VDF+ Y+ ++ EPVV P+ +PNLL NG SGIAVGMAT++P Sbjct: 136 ECRMADATSLMTEAIDEDTVDFQSNYDGQEREPVVLPAAYPNLLVNGVSGIAVGMATNMP 195 Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252 HN+ E+ AA LI +P +E L+ ++ GPD PTGG IV I ++Y GRG F++ Sbjct: 196 PHNLGEVIAAARHLIKHPGADVETLMRFVPGPDLPTGGRIV-GLGGIKDAYTAGRGSFKI 254 Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD--ESAEDVR 310 RA VE V +VVTE+P+ V ++I KI +L+ AK++ + D++D + A +R Sbjct: 255 RATVAVENVTARRKGLVVTELPFTVGPEKVIAKIKDLVSAKKLQGIADVKDLTDRAHGLR 314 Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370 +V+ KN P+ ++E ++ L+ ME F +N L G+ P + L +L+ +L HR E Sbjct: 315 LVIEVKN-GFVPEAVLEQLYKLTPMEESFGINNVALVDGQ-PLTLGLKELLEVYLDHRFE 372 Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQ 427 V+ RRS FR R+ +++GLL+A L+IDE+I IIR+ D + K +++ FSL+E Q Sbjct: 373 VVRRRSEFRRTKRRDRLHLVEGLLVALLDIDEVIRIIRDSDNSAQAKERLMAHFSLSEIQ 432 Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487 IL+ LR L + + +++SE D L E + + ++L S + ++ E+ V + F Sbjct: 433 TQYILDTPLRRLTRFDRIELESERDKLSGEIDALTAILESDAELRKLVSSELAAVAKKF- 491 Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI-RSLKSHSVDLS 541 TD RRT E + A A++ + +P V++S+ G + R+ + V++S Sbjct: 492 -GTD---RRTVLLESAGAQIASVPLE-VADDPCRVLLSSTGLLARTANAEPVEIS 541 >gi|238855511|ref|ZP_04645816.1| DNA gyrase, A subunit [Lactobacillus jensenii 269-3] gi|260665215|ref|ZP_05866064.1| DNA gyrase, A subunit [Lactobacillus jensenii SJ-7A-US] gi|282931537|ref|ZP_06337036.1| DNA gyrase, A subunit [Lactobacillus jensenii 208-1] gi|313472768|ref|ZP_07813256.1| DNA gyrase, A subunit [Lactobacillus jensenii 1153] gi|238831877|gb|EEQ24209.1| DNA gyrase, A subunit [Lactobacillus jensenii 269-3] gi|260560952|gb|EEX26927.1| DNA gyrase, A subunit [Lactobacillus jensenii SJ-7A-US] gi|281304344|gb|EFA96447.1| DNA gyrase, A subunit [Lactobacillus jensenii 208-1] gi|313448867|gb|EFR61216.1| DNA gyrase, A subunit [Lactobacillus jensenii 1153] Length = 825 Score = 388 bits (997), Expect = e-105, Method: Compositional matrix adjust. Identities = 218/607 (35%), Positives = 354/607 (58%), Gaps = 38/607 (6%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 ++ V L + +L YA+S I RA+PD+RDG KPV RRI++ M+E+G+ +KKSA Sbjct: 10 IRNVDLTHTMRSSFLDYAMSVIVARALPDVRDGMKPVQRRILYGMNELGVTPDKPYKKSA 69 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 RIVGEV+GK HPHGD S+Y+++ +AQ F RY LI G GNFG++DGD AA RYTEARM Sbjct: 70 RIVGEVMGKFHPHGDSSIYEAMAHMAQDFSYRYMLIDGHGNFGSVDGDRPAAMRYTEARM 129 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 +++A +L+ ++++ +D++ Y++ ++EP+V P++ P+LL NG SGIAVGM T+IP HN+ Sbjct: 130 SKIALEMLRDINKNTIDWQRNYDDTENEPLVLPARIPSLLVNGASGIAVGMTTNIPPHNL 189 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ L+ NP+ + L++ I GPDFPTGG+I+ R I+ +Y G+G VRA+ Sbjct: 190 SEVISGLHLLMKNPDATTMDLMKVIPGPDFPTGGVIM-GRSGILHAYESGKGNVVVRAKT 248 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316 +EE G I+VTEIP+ V K+ L++KIAEL K I + +RDES + Sbjct: 249 NIEEEKSGRERIIVTEIPFMVNKAMLVQKIAELARDKVIDGITGVRDESDRHGMRITIDI 308 Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376 R +++ ++F + M+T F +NM + G P + L +L+ +L H+ +V+ RR+ Sbjct: 309 RRDASASVVLNNLFKETQMQTNFGMNMVAIVNG-APHFLTLKQMLQYYLDHQEDVVRRRT 367 Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLTENQVDAILN 433 F + + R IL+GL IA +IDEI+ IIRN D K ++SRF L + Q AIL+ Sbjct: 368 KFELDKAEARAHILEGLRIALDHIDEIVNIIRNSQSSDIAKATLISRFELDDKQAQAILD 427 Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493 +RL L LE +++ E +LL + +L ++ + I E+ ++++ F Sbjct: 428 MRLVRLTGLERDKVEQEYQDLLVKIADYKDILAKPERIDHIIYTELLDIQKRFGDD---- 483 Query: 494 RRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALH 544 RRT E++ ++ +++ + +IEK+ + + +++ G+I R+ + + Sbjct: 484 -RRT---EITASEVVSIEDEDLIEKQNVLLTLTHNGYIKRMPVSEFRTQNRGGRGIKGMG 539 Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNLLSGRGHGEA 589 ++ D ++ ++ T D +L + GK Y+ LP NLL GE Sbjct: 540 VQDDDFIERLTYSSTHDYLLFFTNKGKVYSKKAYEIPEYSRIAKGLPIINLLQ-LDKGEK 598 Query: 590 IQLLIDL 596 IQ +I++ Sbjct: 599 IQAMINV 605 >gi|198283144|ref|YP_002219465.1| DNA gyrase subunit A [Acidithiobacillus ferrooxidans ATCC 53993] gi|218666147|ref|YP_002425372.1| DNA gyrase, A subunit [Acidithiobacillus ferrooxidans ATCC 23270] gi|198247665|gb|ACH83258.1| DNA gyrase, A subunit [Acidithiobacillus ferrooxidans ATCC 53993] gi|218518360|gb|ACK78946.1| DNA gyrase, A subunit [Acidithiobacillus ferrooxidans ATCC 23270] Length = 845 Score = 388 bits (997), Expect = e-105, Method: Compositional matrix adjust. Identities = 234/610 (38%), Positives = 349/610 (57%), Gaps = 60/610 (9%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 VSL + + YL YA+S I RA+PD RDG KPVHRR++ AM EM D+ +KKSAR+V Sbjct: 11 VSLEKEMRQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHEMSNDWNKPYKKSARVV 70 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGD +VYD++VR+AQ F RYPLI GQGNFG++DGDS AA RYTE RM+++ Sbjct: 71 GDVIGKYHPHGDTAVYDTMVRMAQDFSMRYPLIDGQGNFGSVDGDSPAAMRYTEVRMSRI 130 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A +L ++++ VDF Y+E++ EP+V P++ PNLL NG++GIAVGMAT+IP HN+ E+ Sbjct: 131 AHEMLADLEKETVDFGPNYDEKEMEPLVMPARIPNLLINGSAGIAVGMATNIPPHNLTEV 190 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 A LAL+D+PE E L + PDFPT G I R +E+YR GRG +RAR C Sbjct: 191 ISACLALVDDPETPDEDLFTLVPAPDFPTAGFI-HGRAGSIEAYRTGRGRVVMRAR-CEF 248 Query: 260 EVGRGS--WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317 E + S I+VTE+PYQV K++LIE+IAE++ KR+ + D+RDES + + Sbjct: 249 ETDKKSNRQSIIVTELPYQVNKAKLIERIAEMVKEKRLEGISDLRDESDKSGMRIAIELK 308 Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377 R + D+++ +++ + M++ F +NM L G P+ + L +L+ ++ HRREV+ RR+ Sbjct: 309 RDANADVVLNNLYQHTVMQSVFNINMVALLDG-APRTLGLRDLLQAFIQHRREVVTRRTV 367 Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP------------KPVMVSR----- 420 F ++ R IL+GL +A +N+D +I++IR P +P MV+ Sbjct: 368 FELKKARDRAHILEGLAVALVNLDPLISLIRAAASPAEAKAQMLAKSWEPGMVAALLVER 427 Query: 421 -----------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGK 469 + L+E Q AIL+LRL L LE+ +I+ E LL ++ +L S Sbjct: 428 GEPSEGMHADGYHLSELQAQAILDLRLHRLTGLEQDKIRDEYLALLDRIRELLEILGSKT 487 Query: 470 QQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRG 528 + I E+ +++ + + RR+ AD + + +I +E + V ++ G Sbjct: 488 RLMEVIREELVAIRDQYGDA-----RRSEIV----ADTGDISTEDLITEEEMVVTFTHAG 538 Query: 529 WIRSLKSHSVDLS--------ALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTL 575 +I++ + A KE D ++ A T L S G K Y L Sbjct: 539 YIKAQPVTVFNAQRRGGKGKMATTTKEEDFVERMFCASTHAYCLFFSNLGKVFWQKVYQL 598 Query: 576 PAGNLLSGRG 585 P +GRG Sbjct: 599 PQ----AGRG 604 >gi|331703027|ref|YP_004399714.1| DNA Gyrase Subunit A [Mycoplasma mycoides subsp. capri LC str. 95010] gi|328801582|emb|CBW53735.1| DNA Gyrase Subunit A [Mycoplasma mycoides subsp. capri LC str. 95010] Length = 834 Score = 388 bits (997), Expect = e-105, Method: Compositional matrix adjust. Identities = 261/760 (34%), Positives = 418/760 (55%), Gaps = 43/760 (5%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + + + + + +L YA+S I RA+PDL+DG KPVHRRII+AM+++G+ KKSA Sbjct: 22 ISPIDISTEVRKDFLEYAMSVIVSRALPDLKDGLKPVHRRIIYAMNDLGITSDKPHKKSA 81 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 RIVGEVIGK HPHGD +VY+++VR+AQ F RYPLI G GNFG+IDGD AAA RYTEAR+ Sbjct: 82 RIVGEVIGKYHPHGDSAVYETMVRMAQEFSYRYPLIDGHGNFGSIDGDGAAAMRYTEARL 141 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 +++ +++ +D D V F D Y+ + EP PNLL NGT GIAVGMATSIP HN+ Sbjct: 142 AKISNYLIKDIDMDTVPFIDNYDASEREPAYLTGYLPNLLVNGTMGIAVGMATSIPPHNL 201 Query: 197 QEICEAALALIDNPEISIEKLL-EYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 +E+ A A IDN +I+I+++L ++I+GPDFPTG ++ + + E Y+ GRG +RA+ Sbjct: 202 KEVVSAINAYIDNNDITIDEILNDHILGPDFPTGALMTNGSK-MREGYKTGRGSVIIRAK 260 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLF 314 EE + VVTEIPYQ K+++IEKIAEL+ K I + DIRDES E +RI++ Sbjct: 261 IDFEE-NKKHDRFVVTEIPYQTNKAKIIEKIAELVKDKTIEGIFDIRDESNYEGIRIIIE 319 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K + +PD+++ ++ + +++ F +N+ L+ +P ++ L I+K ++ + V+ + Sbjct: 320 LK-KDANPDVVLSKLYKYTALQSSFSINLLTLNN-NLPVLLDLKTIIKNYVEFQVNVIIK 377 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAI 431 RS F + +R IL+ L IA N+D++I II+N ++ K + ++++ E Q AI Sbjct: 378 RSIFEKNKLTKRYHILEALHIALDNVDDVINIIKNSKTGEEAKIQLTNKYNFDEEQNKAI 437 Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491 L++RL+ L LE +I E+ N+ +D L+N+ ++Q N + ++ E+ + F + Sbjct: 438 LDMRLQRLVGLERDKITLEMTNIKERLTYLDILINTKEEQNNVLKNQLNEIADKFGDN-- 495 Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS-------ALH 544 RRT + + + +I +++S G+IR + + +++ Sbjct: 496 ---RRTELIDEELIN--IEDEELIPDLKWMILLSQEGYIRRINPDEFRIQKRGGRGVSVN 550 Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNH--NQDI 602 + D + IA D +L + GK Y N+ S + ++ LN ++D Sbjct: 551 AEPSDPIDIATMGKAKDWVLFFTNSGKVYRTKLYNIRSYSRTARGLPIVNFLNDLTSEDK 610 Query: 603 VTAFVYDSTCK-----LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657 +TA + K L V+ KG + SE R GK + + +++ V T Sbjct: 611 ITAILPLRNNKEKFNYLTFVTQKGMIKRTKISEFENINRNGKKAINLRDNDQLVSVFATT 670 Query: 658 G-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKD-----GGISDVICFKICEGLT 710 G D V + E+ K++ + SR G GV+ +D G IS FK+ +T Sbjct: 671 GQDTVFIANESGKVIRIKESVVNPQSRVGGGVKALKLEDDDVVVGAIS---SFKLTH-IT 726 Query: 711 WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750 + + G +D + R G G V R+GKF Sbjct: 727 TVSNKGLFKKTPIDDY--RISGRNGKGIKVMNLNQRTGKF 764 >gi|32491194|ref|NP_871448.1| hypothetical protein WGLp445 [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] gi|25166401|dbj|BAC24591.1| gyrA [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] Length = 847 Score = 388 bits (997), Expect = e-105, Method: Compositional matrix adjust. Identities = 223/596 (37%), Positives = 353/596 (59%), Gaps = 59/596 (9%) Query: 26 LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85 L+ YL YA+S I RA+PD+RDG KPVHRRI+ AM +MG D+ ++KKSARIVG VIGK Sbjct: 17 LKRSYLDYAMSVIIGRALPDVRDGLKPVHRRILFAMKKMGNDWNKSYKKSARIVGNVIGK 76 Query: 86 LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145 HPHGD +VYD++VR+AQ F RY LI GQGNFG++DGDSAAA RYTE R+++++ IL+ Sbjct: 77 YHPHGDSAVYDAIVRMAQNFSLRYKLIDGQGNFGSVDGDSAAAMRYTEVRLSKISHEILK 136 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 +++D V++ Y++ + P V P+K PNLL NG+SGIAVGMAT+IP HN+ EI A LA Sbjct: 137 DLEKDTVNYVSNYDDTEYIPEVMPTKIPNLLLNGSSGIAVGMATNIPPHNIGEIINACLA 196 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW-CVEEVGRG 264 +DN I ++ L++++ GPDFPT GII + I ++Y GRG +RA + + Sbjct: 197 YLDNKNICVKDLMKHLPGPDFPTSGIIYGIK-GIEDAYSTGRGKIYIRANSKIISDNKTK 255 Query: 265 SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKNRSLDPD 323 I++ EIPYQV K RLIEKIA+L+ K+I + +RDES D +RIV+ K R + Sbjct: 256 RESIIIKEIPYQVNKVRLIEKIADLVKEKKIDGISSLRDESDRDGMRIVVEIK-RDHIGE 314 Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383 +++ +++ ++ ++ F +NM L G+ P+ + L IL +L HRR ++ R+++F ++ I Sbjct: 315 IVLNNLYSMTQLQISFGINMVALCYGQ-PKTLSLKKILSYFLYHRRVIITRKTNFELKKI 373 Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV------------------------- 418 R+ +L+ IA NID +I++I+N + + + Sbjct: 374 YYRLNMLESFFIALFNIDIVISLIKNSNSIEEAQLKLVSNEWDINNIYSVLNNKKLIHFF 433 Query: 419 -------------SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLL 465 +++ +++ Q AIL+LRL L KLE ++ E +L+ + K++ +L Sbjct: 434 SKKQKINSNSNKKNKYFMSKKQAKAILDLRLNKLMKLENKKLILEYKDLVNKSYKLNKIL 493 Query: 466 NSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVIS 525 + N I E+ +K+ ++ +RRT + + ++ +I ++ + V +S Sbjct: 494 KYPDELTNSIKKELLILKQEYN-----DKRRTKI--IKKPVNINIED-LINQKDVIVTLS 545 Query: 526 NRGWIR--SLKSHSVD------LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573 ++G+++ LK + SA KE D ++ L A+T D ILL S+ G+ Y Sbjct: 546 HQGYVKYQPLKDYEAQHRGGKGKSAASIKEKDFIERFLVANTHDSILLFSSKGRVY 601 >gi|160941456|ref|ZP_02088791.1| hypothetical protein CLOBOL_06347 [Clostridium bolteae ATCC BAA-613] gi|158435602|gb|EDP13369.1| hypothetical protein CLOBOL_06347 [Clostridium bolteae ATCC BAA-613] Length = 848 Score = 388 bits (997), Expect = e-105, Method: Compositional matrix adjust. Identities = 219/581 (37%), Positives = 341/581 (58%), Gaps = 27/581 (4%) Query: 13 VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72 V + V V L+ +E+ Y+ YA+S I RA+PD+RDG KPV RR++++M E+ Sbjct: 5 VFDKVHEVDLKKTMEQSYIDYAMSVISARALPDVRDGLKPVQRRVLYSMIELNNGPDKPH 64 Query: 73 KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132 +K ARIVG+ +GK HPHGD S+Y +LV +AQ + RYPL+ G GNFG++DGD AAA RYT Sbjct: 65 RKCARIVGDTMGKYHPHGDSSIYGALVNMAQEWSTRYPLVDGHGNFGSVDGDGAAAMRYT 124 Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192 EAR+++++ +L +++D VDF ++E + EP+V PS++PNLL NGTSGIAVGMAT+IP Sbjct: 125 EARLSKISMEMLADINKDTVDFVPNFDETEREPLVLPSRYPNLLVNGTSGIAVGMATNIP 184 Query: 193 SHNVQEICEAALALIDN-----PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247 HN++EI A + +IDN E S+E+++E + GPDFPTG I+ R I E+YR GR Sbjct: 185 PHNLREIIGAVVKMIDNRVEEDRETSLEEIMEIVKGPDFPTGATIL-GRRGIEEAYRTGR 243 Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307 +VRA +E + G I+VTE+PY V K+RLIEKIA+L+ K+I + I DES Sbjct: 244 AKIKVRAVTNIETMANGKSRIIVTELPYMVNKARLIEKIADLVKEKKIDGITYIGDESNR 303 Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367 + + R ++ ++++ + + ++ F + M L + P+V+ L +L+E+L H Sbjct: 304 EGMRINIELRRDVNANVILNQLLKHTQLQDTFGVIMLAL-INNQPKVLNLHQMLEEYLKH 362 Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLT 424 + EV+ RR+ + + + R ILKGLLIA NIDE+I IIR N K ++ RF L+ Sbjct: 363 QEEVVTRRTQYDLNKAEERAHILKGLLIALDNIDEVIRIIRGAANVADAKNQLMERFGLS 422 Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484 + Q AI+++RLR+L LE ++++E L A+ E++ ++L K+ I EI + + Sbjct: 423 DAQSQAIVDMRLRALTGLEREKLENEYRELQAKIEELKAILADEKKLLTVIRDEIMIISD 482 Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSH 536 + RRT D + +I E + +++ G+I RS Sbjct: 483 KYGDD-----RRTAIG----YDDDMSMEDLIPDEDTIIAMTHLGYIKRMDVDNFRSQNRG 533 Query: 537 SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPA 577 + + E D ++ L ++ + G+ Y L A Sbjct: 534 GKGIKGMQTIEEDYIEDLLMTTNHHYMMFFTNTGRVYRLKA 574 >gi|256384433|gb|ACU79003.1| DNA gyrase, A subunit [Mycoplasma mycoides subsp. capri str. GM12] gi|256385265|gb|ACU79834.1| DNA gyrase, A subunit [Mycoplasma mycoides subsp. capri str. GM12] gi|296455402|gb|ADH21637.1| DNA gyrase, A subunit [synthetic Mycoplasma mycoides JCVI-syn1.0] Length = 834 Score = 388 bits (997), Expect = e-105, Method: Compositional matrix adjust. Identities = 261/760 (34%), Positives = 418/760 (55%), Gaps = 43/760 (5%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + + + + + +L YA+S I RA+PDL+DG KPVHRRII+AM+++G+ KKSA Sbjct: 22 ISPIDISTEVRKDFLEYAMSVIVSRALPDLKDGLKPVHRRIIYAMNDLGITSDKPHKKSA 81 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 RIVGEVIGK HPHGD +VY+++VR+AQ F RYPLI G GNFG+IDGD AAA RYTEAR+ Sbjct: 82 RIVGEVIGKYHPHGDSAVYETMVRMAQEFSYRYPLIDGHGNFGSIDGDGAAAMRYTEARL 141 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 +++ +++ +D D V F D Y+ + EP PNLL NGT GIAVGMATSIP HN+ Sbjct: 142 AKISNYLIKDIDMDTVPFIDNYDASEREPAYLTGYLPNLLVNGTMGIAVGMATSIPPHNL 201 Query: 197 QEICEAALALIDNPEISIEKLL-EYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 +E+ A A IDN +I+I+++L ++I+GPDFPTG ++ + + E Y+ GRG +RA+ Sbjct: 202 KEVVSAINAYIDNNDITIDEILNDHILGPDFPTGALMTNGSK-MREGYKTGRGSVIIRAK 260 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLF 314 EE + VVTEIPYQ K+++IEKIAEL+ K I + DIRDES E +RI++ Sbjct: 261 IDFEE-NKKHDRFVVTEIPYQTNKAKIIEKIAELVKDKTIEGIFDIRDESNYEGIRIIIE 319 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K + +PD+++ ++ + +++ F +N+ L+ +P ++ L I+K ++ + V+ + Sbjct: 320 LK-KDANPDVVLSKLYKYTALQSSFSINLLTLNN-NLPVLLDLKTIIKNYVEFQISVIIK 377 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLTENQVDAI 431 RS F + +R IL+ L IA N+D++I II+N ++ K + ++++ E Q AI Sbjct: 378 RSIFEKNKLTKRYHILEALHIALDNVDDVINIIKNSKTSEEAKVQLTNKYNFDEEQNKAI 437 Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491 L++RL+ L LE +I E+ N+ +D L+N+ ++Q N + ++ E+ + F + Sbjct: 438 LDMRLQRLVGLERDKITLEMTNIKERLTYLDVLINTKEEQDNVLKNQLNEIADKFGDN-- 495 Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS-------ALH 544 RRT + + + +I +++S G+IR + + +++ Sbjct: 496 ---RRTELIDEELIN--IEDEELIPDLKWMILLSQEGYIRRINPDEFRIQKRGGRGVSVN 550 Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNH--NQDI 602 + D + IA D +L + GK Y N+ S + ++ LN ++D Sbjct: 551 AEPSDPIDIATMGKAKDWVLFFTNSGKVYRTKLYNIRSYSRTARGLPIVNFLNDLTSEDK 610 Query: 603 VTAFVYDSTCK-----LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657 +TA + K L V+ KG + SE R GK + + +++ V T Sbjct: 611 ITAILPLRNNKEKFNYLTFVTQKGMIKRTKISEFENINRNGKKAINLRDNDQLVSVFATT 670 Query: 658 G-DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKD-----GGISDVICFKICEGLT 710 G D V + E+ K++ + SR G GV+ +D G IS FK+ +T Sbjct: 671 GQDTVFIANESGKVIRIKESVVNPQSRVGGGVKALKLEDDDVVVGAIS---SFKLTH-IT 726 Query: 711 WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750 + + G +D + R G G V R+GKF Sbjct: 727 TVSNKGLFKKTPIDDY--RISGRNGKGIKVMNLNQRTGKF 764 >gi|15643842|ref|NP_228890.1| DNA gyrase, subunit A [Thermotoga maritima MSB8] gi|6831558|sp|O33926|GYRA_THEMA RecName: Full=DNA gyrase subunit A; AltName: Full=Topoisomerase II subunit A gi|4981629|gb|AAD36161.1|AE001768_10 DNA gyrase, subunit A [Thermotoga maritima MSB8] Length = 804 Score = 388 bits (996), Expect = e-105, Method: Compositional matrix adjust. Identities = 228/610 (37%), Positives = 362/610 (59%), Gaps = 27/610 (4%) Query: 26 LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85 L E YL Y++S I RAIPD+RDG KPV RRI++ M E+GL + KKSARIVGEV+GK Sbjct: 14 LVESYLLYSMSVIVGRAIPDVRDGLKPVQRRILYGMYELGLKHNSPTKKSARIVGEVMGK 73 Query: 86 LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145 HPHGD VYD+LVR+AQPF RYPLI GQGNFG+ID D AA RYTEAR+T++AE +L+ Sbjct: 74 YHPHGDAPVYDALVRMAQPFTMRYPLIEGQGNFGSIDRDPPAAMRYTEARLTRLAEEMLE 133 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 ++++ V+ D ++ EP V PSK PNL+ NG SGIAVGMAT+IP HN+ E +A + Sbjct: 134 DIEKNTVNMIDNFDGTLKEPEVLPSKVPNLIINGASGIAVGMATNIPPHNLSETVDALIY 193 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265 LID+PE ++E+L+++I GPDFPTG ++V + E + + Y GRG VR + VE+ G+ Sbjct: 194 LIDHPEATVEELMQFIKGPDFPTGAVVVNASE-LKKVYEEGRGRIIVRGKVHVED-GKRV 251 Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVL-FPKNRSLDPD 323 IV+TEIPY V K+ LIE+IA++ + +IRDES +RIV+ PK+ + + Sbjct: 252 KRIVITEIPYGVSKAGLIEQIAKIAKDDESLPIRNIRDESDKRGMRIVIEIPKD--ANEE 309 Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383 +++ +++ + ++ F + M V+ + P++M L G+++ +L HR EV+ RR+ + + Sbjct: 310 VIINNLYKRTALQDYFNVQMLVIDKHKRPRLMNLKGLMEAFLEHRFEVIRRRARYEYEQY 369 Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAILNLRLRSLR 440 RR +++GLL A I ++ I+RN + + ++ +TE Q AIL++RL L Sbjct: 370 TRRAHVVEGLLKAARAIGVVVDIVRNSKDVESARQSLMETLEITEEQAKAILDMRLSRLT 429 Query: 441 KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500 LE +++E +L+ + ++ +L ++ + E +K+ + RRT Sbjct: 430 SLEIENLQNEYSDLVRKISEVKEILEKDEKVKEIMKKEFLYLKQQYGDP-----RRT--- 481 Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLK 552 EV+ ++ +I +E + + +S++G++ RS K ++ E D ++ Sbjct: 482 EVTDQSIEYNEEELIVEEDVVITLSHKGYLKSTPLNSYRSQKRGGKGITVSKLSEDDEVE 541 Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNL-LSGRG-HGEAIQLLIDLNHNQDIVTAFVYDS 610 + A T L ++ G+AY L L +GR G I ++L + IV + Sbjct: 542 FVVVAKNTSSTLFITNLGRAYVLKNYQLETTGRNTRGRHITAFLNLEDTEKIVALASLNG 601 Query: 611 TCKLLVVSSK 620 + LV+++K Sbjct: 602 EGRDLVIATK 611 >gi|313203303|ref|YP_004041960.1| DNA gyrase subunit a [Paludibacter propionicigenes WB4] gi|312442619|gb|ADQ78975.1| DNA gyrase subunit A [Paludibacter propionicigenes WB4] Length = 872 Score = 388 bits (996), Expect = e-105, Method: Compositional matrix adjust. Identities = 243/721 (33%), Positives = 410/721 (56%), Gaps = 44/721 (6%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 ++ + V++ ++ Y+ Y++S I RA+PD+RDGFKPVHRR++ M+E+G + +K Sbjct: 4 QDRIIKVNIDEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRVLFGMNELGNNSDKPYK 63 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSARIVGEV+GK HPHGD S+Y +LVR+AQ + RYPL+ GQGNFG++DGDS AA RYTE Sbjct: 64 KSARIVGEVMGKYHPHGDSSIYGTLVRMAQHWSMRYPLVDGQGNFGSVDGDSPAAMRYTE 123 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 AR+ +++E +L +++D VDF+ +++ EP V PS+ PNLL NG+SGIAVGMAT++ Sbjct: 124 ARLRKLSEDMLVDINKDTVDFQLNFDDTLKEPTVLPSRIPNLLVNGSSGIAVGMATNMAP 183 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E+ +A +A IDN +I I ++L+YI PDFPTGGII + E++ GRG VR Sbjct: 184 HNLSEVVDATIAYIDNNDIEISEILKYIKAPDFPTGGIIY-GYAGVKEAFETGRGRIVVR 242 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIV 312 ++ +E +G IV+ EIPYQV K LI+ + L+ K++ + I DES E +RIV Sbjct: 243 SKVEIETDAQGREKIVINEIPYQVNKVELIKAVVALVEDKKVEGIAHINDESDREGMRIV 302 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 + K R + +++ +F + +++ F +N L GR P+++ + ++ ++ HR EV+ Sbjct: 303 VDVK-RDANSSVVLNKLFKYTALQSSFSVNNIALVHGR-PRMLNVKDLIHYFVEHRHEVV 360 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVD 429 RR+ F + ++R +L+G +I N+DE I IIR+ P + ++ RF L+E Q Sbjct: 361 IRRTRFELGEAEKRAHLLEGFMIILDNLDEAIQIIRDSKTPDEARTRLMERFGLSEIQSR 420 Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489 AI+ +RLR L +E+ ++++E + ++ + +L + + I E+ EVK + + Sbjct: 421 AIVEMRLRQLTGMEQDKLRAEYEEVMKLIAHLKEILEKIELRMQIIKDELLEVKAKYGDA 480 Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLS 541 RRT V +++ + + E I + IS+ G+I R+ V Sbjct: 481 -----RRTQI--VYSSEEFNPEDFYADDEMI-ITISHLGYIKRTALSEFRAQGRGGVGSK 532 Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHN 599 ++ D ++ A + +L ++ GK Y L ++ G G AIQ +++++ N Sbjct: 533 GSDSRDEDFIEYIYPASMHNTMLFFTSKGKCYWLKVYDIPEGSKNSKGRAIQNMLNID-N 591 Query: 600 QDIVTAFV---------YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS--EE 648 D V AF+ Y + L+ + G +++++ + A +R + + + E+ Sbjct: 592 DDKVNAFIRVKGLNDPEYTKSHYLIFATKNG---VIKKTSLEAYSRPRQNGVNAITIRED 648 Query: 649 KMKLVVKVTGDHVAVVGENR--KLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKI 705 + V++T + V+ NR + + F ++ EM R GVR + + G D + I Sbjct: 649 DQVIQVRLTDGNSEVLMANRNGRAIRFHESKVREMGRTATGVRGMTLDEDG-EDELVGMI 707 Query: 706 C 706 C Sbjct: 708 C 708 >gi|297621240|ref|YP_003709377.1| DNA gyrase subunit A [Waddlia chondrophila WSU 86-1044] gi|297376541|gb|ADI38371.1| DNA gyrase subunit A [Waddlia chondrophila WSU 86-1044] Length = 820 Score = 388 bits (996), Expect = e-105, Method: Compositional matrix adjust. Identities = 264/774 (34%), Positives = 411/774 (53%), Gaps = 84/774 (10%) Query: 26 LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85 +++ YL Y++S I RA+PD RDG KP RRI++AM + L G +K A+I G+ G Sbjct: 18 MKDSYLRYSMSVIISRALPDARDGLKPSQRRILYAMRLLNLSPGGKHRKCAKISGDTSGD 77 Query: 86 LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145 HPHG+Q +Y +LVR+AQP++ RY L+ GQGNFG++DGD AA RYTEAR+T + ++ Sbjct: 78 FHPHGEQVIYPTLVRMAQPWMMRYRLVDGQGNFGSVDGDPPAAMRYTEARLTHASIQLMD 137 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 +D++ VD Y+E SEP VFP+KFPNLL NG+SGIAVGMAT+IP HN++E+ A Sbjct: 138 DLDKNTVDMVPNYDETRSEPTVFPAKFPNLLCNGSSGIAVGMATNIPPHNLKELINATKL 197 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265 ++DNP SI+++++ + PDFPTGGII R + E+Y GRG +R +EE + Sbjct: 198 VLDNPNTSIQEIMQVMPAPDFPTGGIICGYR-GVKEAYHTGRGKIILRGVVNIEE-KKDR 255 Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325 +V+ +IPY V KSRLIE+IAEL K + + D+RDES + ++ R PD++ Sbjct: 256 EILVIDQIPYNVNKSRLIEQIAELTNNKSVTGISDLRDESDKSGMRIVIELKRGEIPDVI 315 Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385 + ++ +D++ F NM L G +P+ M + ++ W+ HR EV+ RR+ + +Q + Sbjct: 316 INQLYKFTDLQVTFGCNMLALDKG-LPRTMNIKQLIGSWVDHRIEVVRRRTRYELQKAEA 374 Query: 386 RVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKL 442 R+ IL+G L A N+DE++ IIR + ++ K ++ F + Q +A+L+LRL L L Sbjct: 375 RLHILEGYLKAIDNLDEVVKIIRASNHREEAKDALIEHFEFSIKQANAVLDLRLYQLTGL 434 Query: 443 EEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEV 502 E +I+SE D LL + E ++L S + + I E+ E+ ++ KS R T E Sbjct: 435 ERDKIQSEYDELLKKIEYYRAVLASEQMVRDIIKEELDEI-QVKHKS----ERATQIVE- 488 Query: 503 SRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHF---KEGDSLKI 553 A+ + +I EP + IS +I+ + + + F KE D LK Sbjct: 489 --AEGDMDIEDLIANEPAIITISQDDYIKRMPVDTFREQRRGGTGVVGFNQKKEEDVLKG 546 Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEA-IQLLIDLNHNQDIVTA----- 605 A+T D +L+ + G+ Y L + G R G+ + LL D+ + I T Sbjct: 547 LYVANTHDHLLVFTNLGRCYWLKVWQIPEGSRRSKGKPLVNLLSDIRSEESIATVLQTSN 606 Query: 606 -----FVYDSTCKLLVVSSKGNAF------------IVE------------ESEIIANTR 636 +V +T +V + +AF IVE E +++ T Sbjct: 607 FEGDRYVLMATRNGIVKKTPIDAFSNPRRNGIWAIDIVEGDELEGARLVEGEQQVMLFTH 666 Query: 637 KGKT----FLKVSSEEKMKLVVK---VTGDHVAVVG-----ENRKLLIF---------SI 675 G KV S +M VK + GD+ VVG N +LI ++ Sbjct: 667 NGMAVRFDHHKVRSMGRMARGVKGVSLKGDNDRVVGCEVVSGNETVLIVCENGFGKRSTV 726 Query: 676 DQIPEMSRGK-GVR--LQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDL 726 + +RG GVR + S ++G + +C +GL + S+G++ S DL Sbjct: 727 SDFRQTNRGGVGVRSIITSERNGKVVGAVCITDDDGLLMMSSSGQTLRISMKDL 780 >gi|197104862|ref|YP_002130239.1| DNA gyrase subunit A [Phenylobacterium zucineum HLK1] gi|196478282|gb|ACG77810.1| DNA gyrase subunit A [Phenylobacterium zucineum HLK1] Length = 932 Score = 388 bits (996), Expect = e-105, Method: Compositional matrix adjust. Identities = 253/712 (35%), Positives = 377/712 (52%), Gaps = 75/712 (10%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 V +++ L+ YL YA+S I RA+PD+RDG KPVHRRI+ +M+E G + KS Sbjct: 15 GVAPIAIEDELKRSYLDYAMSVIVSRALPDVRDGLKPVHRRILFSMNEQGHTPDRGYVKS 74 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 AR+VG+V+GK HPHGD ++YD++VR+AQPF LI GQGNFG++D D AA RYTE+R Sbjct: 75 ARVVGDVMGKYHPHGDVAIYDTMVRMAQPFSMNLLLIDGQGNFGSVDNDPPAAMRYTESR 134 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 MT+ A IL +D+D VDF+D Y+ + EPVV PS+ PNLL NG GIAVGMAT+IP HN Sbjct: 135 MTRAAMAILADLDKDTVDFKDNYDGSEQEPVVLPSRIPNLLVNGAGGIAVGMATNIPPHN 194 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 + E+ +A LA IDNPEI +++LL+ + GPDFPTGG I+ R ++ GRG +R + Sbjct: 195 LGEVVDACLAYIDNPEIGLDELLDIVPGPDFPTGGEII-GRSGARQALMTGRGSVIMRGK 253 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315 +EEV + IV+T IPYQV K+ L+E+IAEL+ KRI + D+RDES D V+ Sbjct: 254 ATIEEVRKEREAIVITAIPYQVNKAALVERIAELVREKRIEGVADLRDESDRDGMRVVVE 313 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 R ++++ ++ + +++ F +NM L+ GR P+ M L ++ ++ R EV+ RR Sbjct: 314 MKRDASAEVILNQLYRYTPLQSSFGVNMLALNRGR-PEQMGLREMVTAFVDFREEVVVRR 372 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK-----------------PVMV 418 + F + R +L GL IA NIDE I IIR+ P P++ Sbjct: 373 TKFELSKARDRGHVLVGLAIAVANIDEFIHIIRSSKDPTEARERLVAKDWPAGDMLPLVE 432 Query: 419 ------------SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466 ++ LT+ Q AIL L L L L +I E L +L Sbjct: 433 LIADPRTLVIDGNKIRLTDEQARAILALTLSRLTGLGRDEIFGEARELAGVIRGHLEILA 492 Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526 S ++ + E+ +V+E F+ RRT E+ D + +I +E + + +++ Sbjct: 493 SRERVMAIVREELVQVREQFAVP-----RRT---EIVEGDADVEDEDLIAREEMVITVTH 544 Query: 527 RGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---- 574 G++ R+ S + KE D++ A+T +L S+ GKAY Sbjct: 545 GGYVKRTPLATYRTQHRGGKGRSGMATKEEDAVTRVFSANTHTPMLFFSSGGKAYKLKVW 604 Query: 575 -LPAGNLLSGRGH----------GEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNA 623 LP G S RG GE+I ++ L +D T YD ++ + GN Sbjct: 605 RLPLGTPTS-RGKAFVNLLPIEPGESITSILPL--PEDEATWDQYD----VMFATRSGNV 657 Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSI 675 + S+ + R GK +K+ + + G V G+N LL ++ Sbjct: 658 RRNKLSDFVDIRRNGKIAMKLDEGD------AIIGVGVCNAGQNDVLLTTAL 703 >gi|325663389|ref|ZP_08151839.1| A subunit [Lachnospiraceae bacterium 4_1_37FAA] gi|325470843|gb|EGC74073.1| A subunit [Lachnospiraceae bacterium 4_1_37FAA] Length = 648 Score = 388 bits (996), Expect = e-105, Method: Compositional matrix adjust. Identities = 224/611 (36%), Positives = 356/611 (58%), Gaps = 29/611 (4%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 + V V L+ +E+ Y+ YA+S I RA+PD+RDG KPV RRI+++M E+ +K Sbjct: 7 DKVHEVDLKKTMEDSYIDYAMSVIASRALPDVRDGLKPVQRRILYSMIELNNGPDKPHRK 66 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 ARIVG+ +GK HPHGD S+Y +LV +AQ + RYPL+ G GNFG++DGD AAA RYTEA Sbjct: 67 CARIVGDTMGKYHPHGDSSIYGALVNMAQEWSTRYPLVDGHGNFGSVDGDGAAAMRYTEA 126 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 R+++++ + +++D VDF ++E + EP V P++FPNLL NGTSGIAVGMAT+IP H Sbjct: 127 RLSRISMELTADINKDTVDFTPNFDETEKEPAVLPARFPNLLVNGTSGIAVGMATNIPPH 186 Query: 195 NVQEICEAALALID-----NPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249 N++E+ A + +ID N E SIE +L+ + GPDFPTG +I+ +R I E+YR GRG Sbjct: 187 NLREVIAAVVKIIDDQIEENGETSIEDILQIVKGPDFPTGAMILGTR-GIEEAYRTGRGK 245 Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309 RVRA +E + G IVVTE+PY V K+RLIEKIAEL+ K+I + D+ D+S + Sbjct: 246 IRVRAVTDIEPMANGKSRIVVTELPYMVNKARLIEKIAELVRDKKIDGITDLSDQSNREG 305 Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369 + R ++ ++++ ++ + ++ F + M L + P+VM + +L +L H+ Sbjct: 306 MRICIELRRDVNANVVLNQLYKHTQLQDTFGVIMLAL-VNNEPKVMNILEMLNYYLRHQE 364 Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTEN 426 EV+ RR+ + + + R IL+GLLIA NIDE+I IIRN + ++ F LT+ Sbjct: 365 EVVTRRTKYELNKAEERAHILEGLLIALDNIDEVIRIIRNSKNAQAAKEGLIEAFQLTDV 424 Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486 Q AI+++RLR+L LE ++++E L+ ++ ++L K I +EI Sbjct: 425 QAQAIVDMRLRALTGLEREKLENEYKELMERIGELRAILADRKLLLGVIK------EEIL 478 Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD------- 539 S G R T D +T + +I ++ + + ++ G+I+ + + + Sbjct: 479 VISGKYGDDRRTSIGFDELDLST--EDLIPEQDVVITMTKLGYIKRMTTDTFKSQNRGGK 536 Query: 540 -LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEAIQLLIDL 596 + + E D ++ T + I+ + G+ Y + + +GR G AI L+ L Sbjct: 537 GIKGMQTIEEDYVEELFMTSTHNYIMFFTNTGRVYRMKGYEIPEAGRTARGTAIINLLQL 596 Query: 597 NHNQDIVTAFV 607 ++ I TA + Sbjct: 597 MPDEKI-TAMI 606 >gi|168183164|ref|ZP_02617828.1| DNA topoisomerase, GyrA/ParC subunit family [Clostridium botulinum Bf] gi|237796207|ref|YP_002863759.1| DNA topoisomerase IV subunit A [Clostridium botulinum Ba4 str. 657] gi|182673665|gb|EDT85626.1| DNA topoisomerase, GyrA/ParC subunit family [Clostridium botulinum Bf] gi|229261223|gb|ACQ52256.1| DNA topoisomerase, GyrA/ParC subunit family [Clostridium botulinum Ba4 str. 657] Length = 956 Score = 388 bits (996), Expect = e-105, Method: Compositional matrix adjust. Identities = 232/661 (35%), Positives = 387/661 (58%), Gaps = 41/661 (6%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 + N+ + L A+ E YL YA+ KERA+PD+RDG KPV RRI++ + + Sbjct: 10 DNNIISFPLEEAMPENYLPYAVEVSKERALPDVRDGLKPVQRRIVYGSYMLKAFPDKPYY 69 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSARIVG+++GK HPHGD SVYD++V LAQ F R PLI G GN+G+ DGDSAAA RYTE Sbjct: 70 KSARIVGDILGKYHPHGDSSVYDAMVILAQDFTTRMPLIDGHGNWGSQDGDSAAAMRYTE 129 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 AR+T +A +++ +D+D V+ D Y+ + EP + P+KFPN+L NG GIAVG+AT+IP Sbjct: 130 ARLTPIAMEMIRDIDKDVVNMVDNYSNSEKEPEILPAKFPNILVNGAFGIAVGLATNIPP 189 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E+ + LA ID EI+ ++LL YI GPD PTGG+I+ ++S++ +Y G G +R Sbjct: 190 HNLVEVIDGTLAYIDKNEITTKELLNYIKGPDLPTGGVII-GKKSMLSAYETGEGRVTLR 248 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR----IPLLEDIRDESAED- 308 A+ +E++ G IV+TE P++ K++L++ I+E+ K+ + + DIRDES + Sbjct: 249 AKTTIEKLENGRLAIVITEFPFRKNKAKLLQFISEMTADKKHSKALENITDIRDESDRNG 308 Query: 309 VRIVL-FPKNRSLD-PDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366 +R V+ F K + D + ++ ++ +D+++ NM L+ G+ P+ + L +LK ++ Sbjct: 309 IRAVIEFKKIATEDIVEKTLKYLYKKTDLQSNISFNMVALADGK-PKTLGLKSMLKYYVE 367 Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSL 423 H++EV+ RR+ ++ ++R I++G + A +DEII IR K ++ +FS Sbjct: 368 HQKEVITRRTKRELEIAEKRFHIVEGFIKAIGIMDEIIKTIRESKSKKNARENLIEKFSF 427 Query: 424 TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483 T+ Q +AIL L L L LE + E L K+ +L S K+ I E+ EVK Sbjct: 428 TDIQAEAILELMLYKLTGLEVVAFEKEYKELEKLINKLTKILKSEKELLKVIKKELIEVK 487 Query: 484 EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSH---SV 538 E ++ +RRT+ E K +++ ++E E + + +SN G+ + +LKS+ S Sbjct: 488 ETYN-----DKRRTSIIEDDEKAKIDVEEIIVE-EDVVLTLSNEGFTKRIALKSYNRSSA 541 Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL-----L 593 ++ + ++EGD + + +T D + L++ +G Y + N+ + + ++L Sbjct: 542 NVEDIEYREGDFNRFLIQCNTKDTLCLITKEGNMYQIKVINIPEFKWKEKGVKLDEIIKT 601 Query: 594 IDLNHNQDIVTAF-VYDSTCK--LLVVSSKG-------NAFIVEESEIIA-NTRKGKTFL 642 IDL ++ I+ AF + D T + +L ++ G + F ++I+A +KG++ + Sbjct: 602 IDL--SETIIEAFSIEDFTAQKDMLFITDSGYIKKTTLDKFNTNYTKIMALKLKKGESLV 659 Query: 643 K 643 K Sbjct: 660 K 660 >gi|149928283|ref|ZP_01916526.1| DNA gyrase subunit A [Limnobacter sp. MED105] gi|149823012|gb|EDM82254.1| DNA gyrase subunit A [Limnobacter sp. MED105] Length = 870 Score = 388 bits (996), Expect = e-105, Method: Compositional matrix adjust. Identities = 237/613 (38%), Positives = 353/613 (57%), Gaps = 71/613 (11%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 +SL + YL YA+S I RA+PD+RDG KPVHRR++ AM E+ D+ A+KKSARIV Sbjct: 11 ISLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRAYKKSARIV 70 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGD +VYD++VR+AQ F RY L+ GQGNFG+IDGD+AAA RYTE R+ ++ Sbjct: 71 GDVIGKYHPHGDSAVYDTIVRMAQDFSLRYMLVDGQGNFGSIDGDNAAAMRYTEIRLAKI 130 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A+ +L +D++ VDF Y+ + EP V P++ PNLL NG+SGIAVGMAT++P HN++E+ Sbjct: 131 AQEMLLDIDKETVDFGPNYDGSEREPKVLPARLPNLLVNGSSGIAVGMATNMPPHNLKEV 190 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 A L ID PE +++ L+E I PDFPT GII + + E YR GRG +RA+ E Sbjct: 191 VAACLYAIDAPECTVDDLIELIPAPDFPTAGIIY-GIQGVREGYRTGRGRVVMRAKTHFE 249 Query: 260 EVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKN 317 ++ +G I+V E+PYQV K L+E+IAEL+ K+I + DIRDES +D +R+V+ K Sbjct: 250 DMDKGGRQSIIVDELPYQVNKKTLLERIAELVSEKKIEGISDIRDESDKDGIRVVIELK- 308 Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377 R P++++ +++ + ++ F +NM L G+ P+++ L ++ +L HRREV+ RR+ Sbjct: 309 RGEVPEVILNNLYKNTQLQDTFGINMVALVDGQ-PRLLNLRDLIFYFLRHRREVITRRTV 367 Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV-----------------MVSR 420 F ++ R +L+GL +A NIDE IAII+ P PV M+SR Sbjct: 368 FELRKARDRGHVLEGLAVALANIDEFIAIIKAAPTP-PVAKADLVAKSWDSSIVREMLSR 426 Query: 421 ----------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELD 452 + L+E Q ILN+RL+ L LE+ +I +E Sbjct: 427 TELGDSGGAKAFRPEGLPARLGLQDDGMYRLSEVQAQEILNMRLQRLTGLEQDKILNEYK 486 Query: 453 NLLAEKEKIDSLLN--SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATL 510 ++ ++I LL+ S ++ NQI + E+ S + R + E + + T Sbjct: 487 EVI---DQIADLLDILSKPERINQIIKD-----ELTSIGNEFADERRSMIEFNATELGT- 537 Query: 511 QQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDR 562 + +I + + V +S+ G+I R+ K A KE D + A+T D Sbjct: 538 -EDLITPQDMVVTLSHSGYIKSQPLTEYRAQKRGGRGKQAATTKEDDWIDYLFVANTHDT 596 Query: 563 ILLLSTDGKAYTL 575 IL S G+ Y L Sbjct: 597 ILYFSNAGRVYWL 609 >gi|119487597|ref|ZP_01621207.1| DNA gyrase subunit A [Lyngbya sp. PCC 8106] gi|119455766|gb|EAW36902.1| DNA gyrase subunit A [Lyngbya sp. PCC 8106] Length = 884 Score = 388 bits (996), Expect = e-105, Method: Compositional matrix adjust. Identities = 257/724 (35%), Positives = 396/724 (54%), Gaps = 45/724 (6%) Query: 11 TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70 ++ EE + LR +++ YL YA+S I RA+PD RDGFKPVHRRI++AM E+GL Sbjct: 2 SISEERIVPRDLREEMQQSYLEYAMSVIVGRALPDARDGFKPVHRRILYAMHELGLMPDR 61 Query: 71 AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130 F+K AR+VGEV+GK HPHGD +VYD+LVR+AQ F R PLI+G GNFG+ID D AA R Sbjct: 62 PFRKCARVVGEVLGKYHPHGDGAVYDALVRMAQHFSMRSPLIAGHGNFGSIDNDPPAAMR 121 Query: 131 YTEARMTQV-AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189 YTE R+ + ++ +L+ +D + V+F D ++ EP+V P++ P LL NG+SGIAVGMAT Sbjct: 122 YTECRLESLTSDAMLRDIDAETVNFGDNFDGSQQEPLVLPARIPQLLLNGSSGIAVGMAT 181 Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249 +IP HN+ E+ + +A+I NPEI+ +L++YI GPDFPTG I+ R I E+Y G+G Sbjct: 182 NIPPHNLGELVDGLVAMIYNPEITDLELMQYIPGPDFPTGAKIL-GRSGIREAYTTGQGS 240 Query: 250 FRVRARWCVEEV---GRGSW-CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305 +R +E + GR I++T++PYQ K+ LIEKIAE++ KRI + DIRDES Sbjct: 241 ITMRGVAQIETLQQRGRPEREAIIITQLPYQTNKAALIEKIAEMVNDKRIEGISDIRDES 300 Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365 ++ R P +++ +++ + +++ F NM L R P+ + L LK +L Sbjct: 301 DRQGMRIVVELRRDAYPRVVLNNLYKQTPLQSNFGANMLALVNSR-PERLTLSRYLKVFL 359 Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN-EDKP--KPVMVSRFS 422 R E + RR+ + ++ R +L+GLLIA N+D II++IR+ D P K ++ RF Sbjct: 360 EFRVETIRRRTEYELRKAQERDHLLQGLLIALDNLDPIISLIRHAADTPTAKQELIERFE 419 Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKS---ELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479 L+E Q DAIL ++LR L LE ++I++ EL N++A+ + I L ++ + I E Sbjct: 420 LSEVQADAILQMQLRRLTALEAHKIQAEHEELQNIIADLQDI---LARRERILDIIESEA 476 Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539 E+KE RRT E+ + +I E ++++ +G+I+ + ++ D Sbjct: 477 IELKERHGSP-----RRT---EIEHTEGELEDTDLIANEKAIILVTEQGYIKRMPVNTFD 528 Query: 540 L--------SALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGH 586 S KE D + L D IL S G KAY +P S Sbjct: 529 AQNRATRGKSGAKMKEDDGIDHFLSCCDHDSILFFSDRGVVYCLKAYQIPVA---SRTAR 585 Query: 587 GEAIQLLIDLNHNQDIVTAFVYD--STCKLLVVSSKGNAFIVEESEIIANTR-KGKTFLK 643 G I ++ + + I + S + LV+ +KG E +N R G + Sbjct: 586 GVPIVQMLPIPKQERITSVVPVSEFSDDEYLVMLTKGGYIKKTELSAFSNIRANGLIAIS 645 Query: 644 VSSEEKMKLVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSRGKGVR-LQSYKDGGISDVI 701 + ++++ V D ++G + I F D G+ R ++S K G ++I Sbjct: 646 LGEGDELRWVRLAKADDSIIIGSRLGMAIHFRTDHKQLRPLGRATRGVKSMKLGKKDELI 705 Query: 702 CFKI 705 I Sbjct: 706 SMDI 709 >gi|325972891|ref|YP_004249955.1| DNA gyrase subunit A [Mycoplasma suis str. Illinois] gi|323651493|gb|ADX97575.1| DNA gyrase, subunit A [Mycoplasma suis str. Illinois] Length = 894 Score = 388 bits (996), Expect = e-105, Method: Compositional matrix adjust. Identities = 244/734 (33%), Positives = 403/734 (54%), Gaps = 80/734 (10%) Query: 12 LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71 L NV+ + +E +L Y+LS I RA+PDL+DG KPVHRRI++A E L + Sbjct: 17 LPSSNVENKDISVVCDESFLNYSLSVITSRALPDLKDGLKPVHRRILYAAYEEKLFNDSR 76 Query: 72 FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131 FKKSA +VG V+G HPHGD+S+YD+LVRL+Q F RYPL+ GQGNFG+IDGD AA RY Sbjct: 77 FKKSATLVGAVMGSYHPHGDKSIYDALVRLSQDFKMRYPLLEGQGNFGSIDGDVPAAMRY 136 Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191 TE ++++ E L G+ E+ VDF D Y+ EP + P P++L NG+ GIAVGMAT I Sbjct: 137 TEIKLSKFGEKFLSGIKEECVDFVDNYDGSKQEPSILPVIVPSILLNGSEGIAVGMATKI 196 Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251 P HN++E+C+A +ALIDNPE+ E+ +EYI GPDFPTGG I+ ES+ + G G Sbjct: 197 PPHNLREVCDAIIALIDNPELQDEQFIEYIKGPDFPTGGEII-GIESVKRYHSKGLGKII 255 Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELI-------------IAKRIPLL 298 +R++ E+ +++ EIP+ ++K+ LI+KIA+L I +R L Sbjct: 256 LRSKV---EIDANKHQLIIKEIPFGIKKADLIKKIADLAYEGKNAKSRRTNEILQR--FL 310 Query: 299 EDIRDES--AEDVRIVLFPKNRSLDPDL--LMESIFMLSDMETRFPLNMNVLSMGRVPQV 354 ++IRDES E +R+++ K S + DL ++ +++ + ++ F +N+ +L G+ PQ+ Sbjct: 311 QNIRDESNLKEGIRLIIECKKGSKESDLKAVLNNLYKYARLQVTFAVNLTLLVDGK-PQL 369 Query: 355 MPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK 414 + + I++ +L H+ ++L R++ F ++ + RR+ +L+G N+DE+I II +ED P+ Sbjct: 370 LGIGAIIRNYLQHQLDMLQRKTRFNLREVQRRIHLLEGRETVVRNLDEVIRIITDEDNPE 429 Query: 415 PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQ 474 ++ ++SLT Q+ I +L LR L+K+E ++ +ELD A++++ +LL+ +Q+ Sbjct: 430 VIIQEKYSLTPVQIKDIFDLPLRQLKKIEFLKLTNELDQKRAKRDEYQALLDDKNKQYEN 489 Query: 475 IACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK 534 I E+ E+K F DL + T +++ K I KE I + ++ +I ++ Sbjct: 490 IKKELIEIKNEF--KNDLRKTLITPKGIAKITKWD----CIPKEDIILKVTQNNYIAAIP 543 Query: 535 SHSVDL---------SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPA-------- 577 +DL S+ FK GD L + + D + + + + + L A Sbjct: 544 LDKIDLTNRNTVGENSSSEFKTGDLDVDLLLSSSHDDLFIFTNYARVFKLKAHEIKISAN 603 Query: 578 ----------GNLLSGRGHGEAIQLLIDLNHNQ----------DIVTAFVYDSTCKLLVV 617 NL+ G E +I L+ + D++ A + K+ Sbjct: 604 KKWSKKPQKLNNLIPLMGKDEKAVKIISLSREEQNNEEKWKDIDLLFATKFGFIRKISFY 663 Query: 618 SSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQ 677 F +E+ + GKT +++S +++K V+K+ D ++ ++ +I Sbjct: 664 K-----FFLEKK-----WKSGKTAMRLSENDQLKFVIKMHKDSEILLASSKNKVIRFKSS 713 Query: 678 IPEMSRGK---GVR 688 I E R + GVR Sbjct: 714 ILEAKRTRKTFGVR 727 >gi|222085986|ref|YP_002544518.1| DNA gyrase, A subunit [Agrobacterium radiobacter K84] gi|221723434|gb|ACM26590.1| DNA gyrase, A subunit [Agrobacterium radiobacter K84] Length = 934 Score = 388 bits (996), Expect = e-105, Method: Compositional matrix adjust. Identities = 242/694 (34%), Positives = 379/694 (54%), Gaps = 65/694 (9%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 ++ +S+ ++ YL YA+S I RA+PD+RDG KPVHRRI++ MSE+G+D+ + K A Sbjct: 16 IEPISIMEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYGMSELGIDWNKKYVKCA 75 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+ G+V+GK HPHG+ ++YD+L R+AQP+ R PLI GQGNFG++DGD AA RYTE R+ Sbjct: 76 RVTGDVMGKYHPHGNLAIYDALARMAQPWSLRLPLIDGQGNFGSVDGDPPAAERYTECRL 135 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 +VA +L +D++ VDFRD Y+ SEPVV P+KFPNLL NG+ GIAVGMAT+IP HN+ Sbjct: 136 QKVAHSLLDDLDKETVDFRDNYDGTLSEPVVVPAKFPNLLVNGSGGIAVGMATNIPPHNL 195 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ + +ALIDNP I + ++++ I GPDFPTG I+ R I +Y GRG +R Sbjct: 196 SEVIDGCIALIDNPAIELPEIMQIIPGPDFPTGAKIL-GRAGIRSAYETGRGSIVMRGVA 254 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316 +E + I++TEIPYQV K+ +IEK+AEL+ KRI + D+RDES V+ Sbjct: 255 AIEPMRGDREQIIITEIPYQVNKATMIEKMAELVREKRIEGISDLRDESDRQGYRVVVEL 314 Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376 R + D+++ ++ + ++T F N+ L+ G+ Q+ LD +L+ +++ R +V+ RR+ Sbjct: 315 KRDANADVILNQLYRYTPLQTSFGANVVALNGGKPEQLTLLD-MLRAFVSFREDVVSRRT 373 Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP----VMVSR------------ 420 + ++ R +L GL IA NIDE+I +IR P+ +M R Sbjct: 374 KYLLRKARERAHVLVGLAIAVANIDEVIRVIRRAPDPQSAREELMTRRWPAEDVESLIRL 433 Query: 421 -------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467 ++L+E Q AIL LRL L L +I EL+ + AE + +L+S Sbjct: 434 IDDPRHRINEDGTYNLSEEQARAILELRLARLTALGRDEIGDELNKIGAEIKDYLDILSS 493 Query: 468 GKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNR 527 + + E+ V++ F RRT E+ + +I +E + V +S+ Sbjct: 494 RVRIQTIVKEELIAVRDEFGTP-----RRT---EIVDGGLEMDDEDLIAREDMVVTVSHL 545 Query: 528 GWI--------RSLKSHSVDLSALHFKEGDSLK--IALHAHTTDRILLLSTDG-----KA 572 G+I R+ + S + ++ D + L+ HT +L S+ G K Sbjct: 546 GYIKRVPLTTYRAQRRGGKGRSGMTTRDEDFVTRLFVLNTHTP--VLFFSSRGIVYKEKV 603 Query: 573 YTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVT--AFVYDSTC----KLLVVSSKGNAFIV 626 + LP G S G+A+ ++ L + I T D T ++ +++G Sbjct: 604 WRLPIGTPTS---RGKALINMLPLEPGERITTIMPLPEDETSWDNLDVMFSTTRGTVRRN 660 Query: 627 EESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH 660 + S+ + R GK +K+ E L V+ +H Sbjct: 661 KLSDFVQVNRNGKIAMKLEEEGDEILSVETCTEH 694 >gi|295090283|emb|CBK76390.1| DNA gyrase subunit A [Clostridium cf. saccharolyticum K10] Length = 855 Score = 388 bits (996), Expect = e-105, Method: Compositional matrix adjust. Identities = 234/630 (37%), Positives = 365/630 (57%), Gaps = 35/630 (5%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 + V + L+ +E+ Y+ YA+S I RA+PD+RDG KPV RR++++M E+ +K Sbjct: 7 DKVHDIDLKKTMEKSYIDYAMSVIAARALPDVRDGLKPVQRRVLYSMIELNNGPDKPHRK 66 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 ARIVG+ +GK HPHGD S+Y +LV +AQ + RY L+ G GNFG++DGD AAA RYTEA Sbjct: 67 CARIVGDTMGKYHPHGDSSIYGALVNMAQKWSTRYMLVDGHGNFGSVDGDGAAAMRYTEA 126 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 R+++++ +L ++++ VDF ++E + EPVV PS+FPNLLANGTSGIAVGMAT+IP H Sbjct: 127 RLSRISMEMLADINKNTVDFVPNFDETEREPVVLPSRFPNLLANGTSGIAVGMATNIPPH 186 Query: 195 NVQEICEAALALIDNP-----EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249 N++E+ A + +IDN + SIE+L+E + GPDFPTG I+ + I E+YR G+G Sbjct: 187 NLRELIAAVVKIIDNQIEEGRDTSIEELMEIVKGPDFPTGATIL-GKAGIEEAYRTGKGK 245 Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309 RVRA +E + G I+VTEIPY V K+RLIEKIAEL+ KR+ + D+RDES + Sbjct: 246 IRVRAVTDIETMPNGKSRIIVTEIPYLVNKARLIEKIAELVKDKRVDGITDLRDESNREG 305 Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369 + R ++ ++++ + + ++ F +NM L + P+V+ L +L +L H++ Sbjct: 306 MRICIELRRDVNANIVLNQLLKHTQLQDTFGVNMLAL-VNNEPKVLNLHQMLTYYLDHQK 364 Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTEN 426 +V+ RR+ + + + R IL+GLL A IDE+I IIR + K ++ RF L++ Sbjct: 365 DVVTRRTKYDLNKAEERAHILEGLLKALDYIDEVIRIIRGSKTVAEAKATLMERFELSDA 424 Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR-EVKEI 485 Q AI+++RLR+L LE + +L N E EK + L N++ I+ E++ I Sbjct: 425 QAQAIVDMRLRALTGLE----REKLLNEYQELEKRIAELRGILADENKLLTVIKEEIQLI 480 Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD------ 539 K D R + + E + + +I E + V I+N G+I+ + S + Sbjct: 481 SDKYGDDRRTKIGYDEFDMS-----AEDLIPDEDVVVAITNLGYIKRMSSDNFKSQNRGG 535 Query: 540 --LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEAIQLLID 595 + + + D ++ L T ++ + G+ Y L A + +GR G AI LI Sbjct: 536 KGIKGMQTIDEDYIEELLMTTTHHYMMFFTNTGRVYRLKAYEIPEAGRTARGTAIVNLIQ 595 Query: 596 LNHNQDIVTAFV----YDSTCKLLVVSSKG 621 L + I TA V +D L + + G Sbjct: 596 LQPGEKI-TATVPMKEFDEDKFLFMATKNG 624 >gi|256424423|ref|YP_003125076.1| DNA gyrase, A subunit [Chitinophaga pinensis DSM 2588] gi|256039331|gb|ACU62875.1| DNA gyrase, A subunit [Chitinophaga pinensis DSM 2588] Length = 859 Score = 387 bits (995), Expect = e-105, Method: Compositional matrix adjust. Identities = 225/591 (38%), Positives = 355/591 (60%), Gaps = 25/591 (4%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 +++ ++ Y+ Y++S I RA+PD+RDG KPVHRR++ M+E+G + +KKSARIV Sbjct: 16 INIEEQMKTAYIDYSMSVIVGRALPDVRDGLKPVHRRVLFGMNELGNNSNKPYKKSARIV 75 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 GEV+GK HPHGD S+YD++VR+AQP+ RY L+ GQGNFG++DGD AA RYTE R+ ++ Sbjct: 76 GEVMGKFHPHGDASIYDTIVRMAQPWSLRYMLVDGQGNFGSVDGDMPAAMRYTEIRLQRM 135 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 AE +L+ +D++ VDF +++ EP V P++ PNLL NG SGIAVGMAT+I HN+ E+ Sbjct: 136 AEAMLEDIDKETVDFTLNFDDTLEEPTVLPTRIPNLLINGASGIAVGMATNIMPHNLSEV 195 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 + +A IDN +I+IE+L++++ PDFPTGGII E + + + GRG VR + VE Sbjct: 196 VDGLIAYIDNRDITIEELIKHVKAPDFPTGGIIY-GYEGVKQGFETGRGRVVVRGKVNVE 254 Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKNR 318 G +V+ E+PYQ+ K+ L +KIA+L K I + + RDES D +R+V+ K Sbjct: 255 TSKAGRERLVIYELPYQINKAALHQKIAQLADDKIIEGISEARDESDRDGMRLVIDLKRE 314 Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378 ++ ++++ ++ S+++T + +N L GR P+V+ L +L E++ R EV+ RR+ F Sbjct: 315 AI-ANVVINQLYKYSELQTSYGINNVALVKGR-PRVLNLKDMLSEFVDFRHEVVVRRTRF 372 Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVDAILNLR 435 ++ + + IL+G LIA ++DE+IA+IR P K +++RF L+E Q AIL LR Sbjct: 373 DLRKAEEKAHILQGYLIALDHLDEVIALIRASRTPEEAKEGLMTRFELSEIQSKAILELR 432 Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495 L+ L +E +IK E D ++ + +L+ ++ I E+ +VK+ F G Sbjct: 433 LQRLTGMERDKIKEEYDEVMKLIAYLKEILSDEGLRFKIIKDELEDVKKRF------GDE 486 Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------DLSALHFK--E 547 R T E+ + +I +E + + IS+ G+I+ ++ AL K E Sbjct: 487 RKT--EIQYLASEMRMEDIIAEEDVVITISHLGYIKRTSAYDYRQQKRGGRGALGGKTRE 544 Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDL 596 D ++ A T +L + G+ Y L + G G G AIQ LI+L Sbjct: 545 EDYIEHLFVASTHHTMLFFTEKGRCYWLKVYEIPEGEKSGKGRAIQNLINL 595 >gi|163760265|ref|ZP_02167348.1| DNA gyrase subunit A [Hoeflea phototrophica DFL-43] gi|162282664|gb|EDQ32952.1| DNA gyrase subunit A [Hoeflea phototrophica DFL-43] Length = 945 Score = 387 bits (995), Expect = e-105, Method: Compositional matrix adjust. Identities = 245/716 (34%), Positives = 388/716 (54%), Gaps = 63/716 (8%) Query: 13 VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72 + ++ VS+ ++ YL YA+S I RA+PD+RDG KPVHRRI+HAM E G + + Sbjct: 11 ITPGIEPVSIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILHAMHEGGYHWNRKY 70 Query: 73 KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132 KS+RIVG+V+GK HPHGDQS+YD++VR+AQ + LI GQGNFG+IDGD AA RYT Sbjct: 71 VKSSRIVGDVMGKYHPHGDQSIYDAMVRMAQHWSMGAMLIDGQGNFGSIDGDPPAAMRYT 130 Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192 E+R+ ++A +++ +D+D VDF++TY+ EP V P++FPNLL NG GIAVGMAT+IP Sbjct: 131 ESRLAKLAHEMIEDIDKDTVDFQETYDSSGREPKVLPARFPNLLVNGAGGIAVGMATNIP 190 Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252 HN+ E+ +A++DNP I + +L++ I GPDFPT GII+ + I +++ GRG + Sbjct: 191 PHNLVEVVNGCMAIMDNPSIDLLELMQIIPGPDFPTSGIIL-GQAGIRQAFETGRGSVIM 249 Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312 R + VE + I++TE+PYQV KS +IEK+AEL+ KRI + D+RDES V Sbjct: 250 RGKVHVEPMRNDREAIIITEVPYQVNKSSMIEKMAELVRDKRIEGISDLRDESDRQGYRV 309 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 + R + D+++ ++ + +++ F +NM L+ G+ P++M L +LK +++ R +V+ Sbjct: 310 VIELKRDANADVIINQLYRYTPLQSSFGVNMVALNGGK-PELMNLIDMLKAFVSFREDVI 368 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP----KPVMVSR-------- 420 RR+ + ++ R +L GL IA NIDE+IA+IR P + +M R Sbjct: 369 TRRTKYLLRKARERAHVLVGLAIAVANIDEVIALIRKAPDPATAREQLMTRRWPAMDVEV 428 Query: 421 -----------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDS 463 ++L+E Q AIL LRL L L +I EL + E + Sbjct: 429 LIRLIDDPRHRINEDGTYNLSEEQARAILELRLARLTALGRDEIGDELGKIGEEIKDFLE 488 Query: 464 LLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVV 523 +L S + + E+ V++ F RRT E + +I +E + V Sbjct: 489 ILGSRIRVQQIVKDELIAVRDEFGVP-----RRTVIAE---GGPDMDDEDLIAREDMVVT 540 Query: 524 ISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG----- 570 +S+ G+I R+ + S + K+ D + A+T +L S+ G Sbjct: 541 VSHAGYIKRVPLATYRAQRRGGKGRSGMATKDEDFVTRLFVANTHTPVLFFSSRGIVYKE 600 Query: 571 KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY---DSTCKLLVV---SSKGNAF 624 K + LP G S G+A+ ++ L + I + +++C L V + +G Sbjct: 601 KVWRLPIGTPTS---RGKALINMLPLEKGERITSIMPLPEDETSCGELDVMFSTKRGTVR 657 Query: 625 IVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--DHVAVVGENRKLLIFSIDQI 678 + S+ + R GK +K+ S+ L V+ D V + + + FS+D + Sbjct: 658 RNKLSDFVQVNRNGKIAMKLDSDGDEILNVETCNELDDVLLTTALGQCIRFSVDDV 713 >gi|255009399|ref|ZP_05281525.1| DNA gyrase A subunit [Bacteroides fragilis 3_1_12] gi|313147158|ref|ZP_07809351.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] gi|313135925|gb|EFR53285.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] Length = 845 Score = 387 bits (995), Expect = e-105, Method: Compositional matrix adjust. Identities = 252/772 (32%), Positives = 423/772 (54%), Gaps = 47/772 (6%) Query: 12 LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71 L ++ + +++ ++ Y+ Y++S I RA+PD+RDGFKPVHRRI++ M E+G Sbjct: 2 LEQDRIIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILYGMMELGNTSDKP 61 Query: 72 FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131 +KKSARIVGEV+GK HPHGD SVY ++VR+AQ + RYPL+ GQGNFG++DGDS AA RY Sbjct: 62 YKKSARIVGEVLGKYHPHGDSSVYFAMVRMAQEWAMRYPLVDGQGNFGSVDGDSPAAMRY 121 Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191 TEAR+ ++ E ++Q + ++ VDF ++ EP V P++ PNLL NG SGIAVGMAT++ Sbjct: 122 TEARLNKLGEEMMQDLYKETVDFEPNFDNTLMEPKVMPTRIPNLLVNGASGIAVGMATNM 181 Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251 P HN+ E+ +A A +DN ++++E+L+EY+ PDFPTGG I + E+Y GRG Sbjct: 182 PPHNLSEVIDACEAYLDNKDVTVEELMEYVKAPDFPTGGYIY-GISGVREAYLTGRGRVV 240 Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVR 310 +RA+ +E G+ IVVTEIPY V K+ LI+ IA+L+ KRI + + DES E +R Sbjct: 241 MRAKAEIES-GQTHDKIVVTEIPYNVNKAELIKAIADLVNEKRIEGISNANDESDREGMR 299 Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370 IV+ K R + +++ ++ ++ ++T F +N L GR P+++ L ++ ++ HR + Sbjct: 300 IVIDIK-RDANASVVLNKLYKMTALQTSFGVNNVALVNGR-PKMLNLRDLIVYFVEHRHD 357 Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQ 427 V+ RR+ F ++ R IL+GL+IA NIDE+I IIR P ++ RF L+E Q Sbjct: 358 VVIRRTQFDLRKAKERAHILEGLIIASDNIDEVIRIIRAAKTPNDAISGLMERFKLSEIQ 417 Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487 AI+ +RLR L L + Q+ +E D ++ + ++S+L + I E+ EV+ + Sbjct: 418 ARAIVEMRLRQLTGLMQDQLHAEYDEVMKQIAYLESILADDEVCRKVIKDELLEVRAKYG 477 Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVD 539 RR+ E+ + + + + + + IS+ G+I R+ V Sbjct: 478 DE-----RRS---EIVYSSEEFNPEDFYADDQMIITISHMGYIKRTPLTEFRAQNRGGVG 529 Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLN 597 ++ D ++ A + ++ + GK Y L + G G AIQ L++++ Sbjct: 530 SKGTETRDEDFIEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTKNSKGRAIQNLLNID 589 Query: 598 HNQDIVTAFV---------YDSTCKLLVVSSKGNAFIVEESEIIANTR---KGKTFLKVS 645 + D V A++ Y ++ +L + G +++++ + +R G + + Sbjct: 590 SD-DAVNAYLRVKSLNDQEYINSHYVLFCTKNG---VIKKTSLEQYSRPRQNGVNAITIR 645 Query: 646 SEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDV--- 700 ++++ V G++ + + N + + F + M R GVR + D G +V Sbjct: 646 EDDRVIEVRMTNGNNEIIIANRNGRAIRFHEAAVRVMGRTATGVRGITLDDDGQDEVIGM 705 Query: 701 ICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752 IC K E + + + + Y + + RGG G ++GK ++ Sbjct: 706 ICIKDLETESVMVVSEQGYGKRSDIEDYRKTNRGGKGVKTMNITEKTGKLVT 757 >gi|29840267|ref|NP_829373.1| DNA gyrase subunit A [Chlamydophila caviae GPIC] gi|29834615|gb|AAP05251.1| DNA gyrase, subunit A [Chlamydophila caviae GPIC] Length = 830 Score = 387 bits (995), Expect = e-105, Method: Compositional matrix adjust. Identities = 260/722 (36%), Positives = 391/722 (54%), Gaps = 53/722 (7%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 EE + +L ++E YL Y++S I RA+PD+RDG KP RRI++AM ++ L GA + Sbjct: 5 EEIIVPKNLEEEMKESYLRYSMSVIISRALPDVRDGLKPSQRRILYAMKQLNLTPGAKHR 64 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 K A+I G+ G HPHG+ +Y +LVR+AQ + RYPL+ GQGNFG+IDGD AAA RYTE Sbjct: 65 KCAKICGDTSGDYHPHGESVIYPTLVRMAQNWAMRYPLVDGQGNFGSIDGDPAAAMRYTE 124 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 AR+T A +++ +D+D VD Y+E EPVVFPSKFPNLL NG+SGIAVGMAT+IP Sbjct: 125 ARLTHSAIFLMEDLDKDTVDMVSNYDETKHEPVVFPSKFPNLLCNGSSGIAVGMATNIPP 184 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E+ EA L ++ NP SIE++LE + GPDFPT G I+ E I +Y GRG +VR Sbjct: 185 HNLGELIEATLLVLSNPNASIEEILEVMPGPDFPT-GGIICGGEGIRSTYHTGRGKIKVR 243 Query: 254 ARWCVEE-VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRI 311 AR VEE + I++TE+PY V KSRLIE+IA+L+ K + + D+RDES +D +R+ Sbjct: 244 ARLHVEENADKHRENIILTEMPYNVNKSRLIEQIADLVNDKTLAGISDVRDESDKDGIRV 303 Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371 VL K + ++++ ++ +D++ F NM L +P+ M + ++ W+ HR EV Sbjct: 304 VLELK-KGESSEIVINRLYKFTDIQVTFGANMLALDKN-LPRTMNIHRMISAWIRHRTEV 361 Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQV 428 + RR+ + + + R IL+G L A +DE++ IRN D K +V F TE Q Sbjct: 362 IRRRTRYELNKAEARAHILEGFLKALSCLDEVVRTIRNSDSKEHAKHQLVENFGFTEQQS 421 Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488 AIL LRL L LE +I+ E D LL + +L + I E+++++ + Sbjct: 422 VAILELRLYQLTGLEAEKIQKEYDELLNKIAYYKRVLADEGLVKDIIRNELQDIQRVHKT 481 Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSHSVDL 540 R R F + +I EP+ + IS +++ + K + Sbjct: 482 PR---RTRIEFDADD----IRDIEDIITNEPVIITISGDDYVKRMPIKVFREQKRGGHGV 534 Query: 541 SALHFKEG-DSLKIALHAHTTDRILLLSTDGKAY-----TLPAG----------NLLSGR 584 S K+G D LK A T D +L+ + G+ Y LP G N L G Sbjct: 535 SGFDMKKGSDFLKAVYSASTKDYLLIFTNFGQCYWLKVWQLPEGERRAKGKPIINFLEGI 594 Query: 585 GHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR-KGKTFLK 643 GE + ++++ + ++ F++ +T +V AF +N R KG L+ Sbjct: 595 RPGEQLAAVLNVKNFEN--AGFLFLATKHGVVKKVALEAF--------SNPRKKGIRALE 644 Query: 644 VSSEEKMKLVVKVTGDHVAVVGENR--KLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDV 700 + +++ +T + V+ R + F D++ M R +GVR S K+ V Sbjct: 645 IDDGDELIAAAHITSEEEKVMLFTRLGMAVRFPHDKVRPMGRTARGVRGVSLKNENDRVV 704 Query: 701 IC 702 C Sbjct: 705 AC 706 >gi|206561292|ref|YP_002232057.1| DNA gyrase subunit A [Burkholderia cenocepacia J2315] gi|198037334|emb|CAR53261.1| DNA Gyrase, subunit A [Burkholderia cenocepacia J2315] Length = 867 Score = 387 bits (995), Expect = e-105, Method: Compositional matrix adjust. Identities = 235/620 (37%), Positives = 347/620 (55%), Gaps = 70/620 (11%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 SL + YL YA+S I RA+PD+RDG KPVHRR++ AM E+ D+ A+KKSARIV Sbjct: 11 TSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRAYKKSARIV 70 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGD +VYD++VR+AQ F RY LI GQGNFG+IDGD+AAA RYTE RM ++ Sbjct: 71 GDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLIDGQGNFGSIDGDNAAAMRYTEIRMAKI 130 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 +L +D++ VDF Y+ + +P V PS+ PNLL NG+SGIAVGMAT+IP HN+ E+ Sbjct: 131 GHELLADIDKETVDFEPNYDGNEMQPSVLPSRIPNLLINGSSGIAVGMATNIPPHNLNEV 190 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 +A L+ NPE +I++L+E I PDFPT GII + + YR GRG +RA E Sbjct: 191 VDACQHLLGNPEATIDELIEIIPAPDFPTAGIIY-GVAGVRDGYRTGRGRVVMRAATHFE 249 Query: 260 EVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318 E+ RG I+V E+PYQV K L+E+IAEL+ K++ + DIRDES + V+ R Sbjct: 250 EIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKR 309 Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378 P++++ +++ + ++ F +NM L G+ P+++ L IL+ +L+HRREVL RR+ + Sbjct: 310 GEVPEVVLNNLYKATQLQDTFGMNMVALVDGQ-PKLLNLKEILQCFLSHRREVLTRRTIY 368 Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---------KP-------VMVSR-- 420 ++ R +L+GL +A NIDE IAII+ P KP M++R Sbjct: 369 ELRKARERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMAKPWDSSLVREMLTRAE 428 Query: 421 ----------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELD 452 + L++ Q IL +RL+ L LE+ +I E Sbjct: 429 SENAAAGGRSAYRPEGLNPAFGMQADGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEYR 488 Query: 453 NLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ 512 +++A+ + +L ++ I E+ VK F G R + E++ + T + Sbjct: 489 DVMAQIADLLDILARPERITTMIGEELTAVKAEF------GDARRSRIELNATELNT--E 540 Query: 513 AMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRIL 564 +I + + V +S+ G++ R+ K A KE D ++ A+T D IL Sbjct: 541 DLITPQDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYIL 600 Query: 565 LLSTDG-----KAYTLPAGN 579 S G K Y +P G+ Sbjct: 601 CFSNRGRVYWVKVYEVPQGS 620 >gi|254785508|ref|YP_003072937.1| DNA gyrase subunit alpha [Teredinibacter turnerae T7901] gi|237684254|gb|ACR11518.1| DNA gyrase, A subunit [Teredinibacter turnerae T7901] Length = 856 Score = 387 bits (995), Expect = e-105, Method: Compositional matrix adjust. Identities = 272/813 (33%), Positives = 425/813 (52%), Gaps = 123/813 (15%) Query: 13 VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72 + + + VS+ L++ YL YA+S I RA+PD+RDG KPVHRR++ AMSE+ D+ + Sbjct: 4 IAKEILPVSIEDELKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELNNDWNKPY 63 Query: 73 KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132 KKSAR+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG+IDGD AAA RYT Sbjct: 64 KKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYTLVDGQGNFGSIDGDGAAAMRYT 123 Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192 E RM +++ +L +D++ VDF Y+ + P V P++ PNLL NG+SGIAVGMAT+IP Sbjct: 124 EIRMQKLSHDLLADLDKETVDFVPNYDGTEQIPAVLPTRVPNLLINGSSGIAVGMATNIP 183 Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252 HN++E+ + LI+NP +I+ L+E I GPDFPTGGII R I+ +YR GRG V Sbjct: 184 PHNLREVITGCIRLIENPAATIDDLIEDIPGPDFPTGGII-NGRAGILMAYRTGRGRIYV 242 Query: 253 RARWCV---EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309 RA+ V E+ R + I++ EIPYQV K+RLIEKIAEL+ K+I + +IRDES +D Sbjct: 243 RAKAEVVTDEKTNRDT--ILIHEIPYQVNKARLIEKIAELVKDKKIEGISEIRDESDKDG 300 Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369 V+ R D+++ +++ + +++ F +N+ L + P+V+ L +L+ +++HRR Sbjct: 301 LRVVIEIKRGDMGDVVLNNLYAQTQLQSVFGINIVAL-VDDQPKVLNLKQMLEHFISHRR 359 Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR------ 420 EV+ RR+ + ++ R +L+GL +A NIDE+IA+I+ P + +++R Sbjct: 360 EVVTRRTVYLLRKARERGHVLEGLAVAIANIDEVIALIKASQTPAEAREALLARGWGTNT 419 Query: 421 ----------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELD 452 + L+ QV AIL LRL L +E ++ +E + Sbjct: 420 ISQFLERAGADACRPDDLGAEFGMRDGQYFLSPAQVQAILELRLHRLTGMEHDKLLAEYE 479 Query: 453 NLLAEKEKIDSLLNSGKQQWNQIACEIREV--KEIFSKSTDLGRRRTTFCEVSRADKATL 510 L + + +L++ A + EV +E+ + + G R T + S+ D Sbjct: 480 EKLQQISEYLEILSN--------AVRLMEVIREELEAVMAEYGDERRTDIQNSQQDLTV- 530 Query: 511 QQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDR 562 + +I +E V IS+ G+ ++ + + +A K+ D ++ L A+T D Sbjct: 531 -EDLINEEDRVVTISHGGYAKTQPLDAYQAQRRGGMGKAATSVKDEDFVEHLLIANTHDY 589 Query: 563 ILLLSTDG-----KAYTLP-AGNLLSGRG--------HGEAIQLL--------------- 593 IL + G K Y +P AG GR GE I + Sbjct: 590 ILCFTNAGKVFWLKVYQIPVAGRQSRGRPMVNLLPLEEGERITSILPVREFDEDRFIVMA 649 Query: 594 ------------------------IDLNHNQDIVTAFVYDSTCKLLVVSSKGNA--FIVE 627 IDL +V + D ++++SS G A F E Sbjct: 650 TSQGTVKKTPLSQFARPRSVGLRAIDLVEGDHLVGTAITDGQQDIMLLSSSGKAARFAEE 709 Query: 628 ESEIIANTRKGKTFLKVSSEEK-MKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRG-K 685 + + T +G ++++ E + + +V+ G V V EN +D P RG + Sbjct: 710 QVRSMGRTSRGVRGIRMADEHRVIAMVIPADGGKVLTVSENGYGKRTDVDDFPTKGRGSQ 769 Query: 686 GV-RLQ-SYKDGGISDVICFKICEGLTWIDSAG 716 GV +Q S ++GG+ + + L I G Sbjct: 770 GVIAMQVSERNGGLVGAVQIFDGDELMMISDQG 802 >gi|15639000|ref|NP_218446.1| DNA gyrase, subunit A (gyrA) [Treponema pallidum subsp. pallidum str. Nichols] gi|189025241|ref|YP_001933013.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Treponema pallidum subsp. pallidum SS14] gi|4033399|sp|O83051|GYRA_TREPA RecName: Full=DNA gyrase subunit A gi|3322255|gb|AAC64998.1| DNA gyrase, subunit A (gyrA) [Treponema pallidum subsp. pallidum str. Nichols] gi|189017816|gb|ACD70434.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Treponema pallidum subsp. pallidum SS14] gi|291059425|gb|ADD72160.1| DNA gyrase, A subunit [Treponema pallidum subsp. pallidum str. Chicago] Length = 813 Score = 387 bits (995), Expect = e-105, Method: Compositional matrix adjust. Identities = 239/698 (34%), Positives = 395/698 (56%), Gaps = 39/698 (5%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 +S+ ++ Y+ Y++S I RA+PD+RDG KPVHRRI++AM E GL F +K A+IV Sbjct: 15 ISIETEVKRAYIDYSMSVIVSRALPDVRDGLKPVHRRILYAMEEKGLRFSGPTRKCAKIV 74 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+V+G HPHGD SVYD+LVRL Q F RYP+I QGNFG I GD AAYRYTEA+M ++ Sbjct: 75 GDVLGSFHPHGDASVYDALVRLGQDFSLRYPVIHPQGNFGTIGGDPPAAYRYTEAKMARI 134 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 AE +++ + ++ V F +++ D EP V P +FP LLANG+SGIAVGM T++P HN++EI Sbjct: 135 AESMVEDIKKETVSFVPNFDDSDVEPTVLPGRFPFLLANGSSGIAVGMTTNMPPHNLREI 194 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 A A I+NP +SI++L + I GPDFPTGGII + I +SY GRG VRAR+ +E Sbjct: 195 AAAISAYIENPNLSIQELCDCINGPDFPTGGIIF-GKNGIRQSYETGRGKIVVRARFTIE 253 Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE--DVRIVLFPKN 317 +G I+ TE+PYQV + L+ +I EL AK I + ++ DE+++ +RIV+ K Sbjct: 254 TDSKGRDTIIFTEVPYQVNTTMLVMRIGELARAKVIEGIANVNDETSDRTGLRIVVELK- 312 Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377 + +++ +F + +++ F + L GR P+++ L +++ ++ HR +V+ RR+ Sbjct: 313 KGTPAQVVLNHLFAKTPLQSSFNVINLALVEGR-PRMLTLKDLVRYFVEHRVDVVTRRAH 371 Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAILNL 434 F ++ R+ +++ L+ A ID+II +IR N + K + +F Q AI+++ Sbjct: 372 FELRKAQERIHLVRALIRALDAIDKIITLIRHSQNTELAKQRLREQFDFDNVQAQAIVDM 431 Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS--KSTDL 492 +++ L LE +++EL +L ++ LL S ++ + E R++ ++F + TD+ Sbjct: 432 QMKRLTGLEVESLRTELKDLTELISSLEELLTSPQKVLGVVKKETRDIADMFGDDRRTDI 491 Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLK 552 + +V + I+KE + ++IS+ G+I+ + + K S Sbjct: 492 VSNEIEYLDV---------EDFIQKEEMVILISHLGYIKRVPVSAYRNQNRGGKGSSSAN 542 Query: 553 IALH--------AHTTDRILLLSTDGKAYTLPA-GNLLSGRGH-GEAIQLLIDLNHNQDI 602 +A H A T D ++ +++ G+AY L G SGR + G I+ L+ + +++I Sbjct: 543 LAAHDFISQIFTASTHDYVMFVTSRGRAYWLKVYGIPESGRANRGSHIKSLLMVATDEEI 602 Query: 603 VTAFV----YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG 658 TA V + + + + +++G V + +G LK+S + + V V Sbjct: 603 -TAIVSLREFSNKSYVFMATARGVVKKVTTDNFVNAKTRGIIALKLSGGDTLVSAVLVQD 661 Query: 659 -DHVAVVGENRKLLIFSIDQIPEMSRGK----GVRLQS 691 D V ++ K L S ++ EM R G++L S Sbjct: 662 EDEVMLITRQGKALRMSGREVREMGRNSSGVIGIKLTS 699 >gi|322370372|ref|ZP_08044931.1| DNA gyrase subunit A [Haladaptatus paucihalophilus DX253] gi|320550080|gb|EFW91735.1| DNA gyrase subunit A [Haladaptatus paucihalophilus DX253] Length = 831 Score = 387 bits (995), Expect = e-105, Method: Compositional matrix adjust. Identities = 228/614 (37%), Positives = 365/614 (59%), Gaps = 37/614 (6%) Query: 13 VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72 V E VK+V + +E+ Y+ YA+S I RA+PD+RDG KPVH+RI++AM G+ A+ Sbjct: 12 VAEKVKSVRVEDEMEQSYIDYAMSVIAGRALPDVRDGLKPVHKRILYAMHRSGVTSNASH 71 Query: 73 KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132 +KS+ IVG+ +G HPHGDQS+YD+L R+AQ F RYPLI GQGNFG++DGD AA RYT Sbjct: 72 RKSSNIVGDTMGDFHPHGDQSIYDALARMAQTFSMRYPLIDGQGNFGSVDGDPPAAMRYT 131 Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192 EARM ++E +L ++ D VDF+ Y+ EP V PS PNLL NG+SGIAVGM+T+IP Sbjct: 132 EARMDSLSEEMLADIEMDTVDFKPNYDGRLEEPEVLPSAVPNLLINGSSGIAVGMSTNIP 191 Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252 HN+ E+ +A + LIDNP+ ++E L+E++ GPDFPTG IV R +I ++Y+ GRG RV Sbjct: 192 PHNLGEVIDATVELIDNPDATVEDLMEHVKGPDFPTGANIV-GRNAIHQAYKTGRGRLRV 250 Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRI 311 RA + V++ IV+TE+P+Q K+RLI++IA+ + I + D+RDES D +R+ Sbjct: 251 RAEYEVQD-----DRIVITELPFQTNKARLIQRIADHVNDGTIEGIRDLRDESDRDGIRV 305 Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRV---PQVMPLDGILKEWLAHR 368 V+ K ++ P+++ + + R +++S+ V P+V+ L +L+ +L HR Sbjct: 306 VVELKQNAI-PEVVENQL-----LNHRLERTFSIISLALVDGQPKVLTLKELLQHYLDHR 359 Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTE 425 R+V+ RRS F + + R IL+G L A NID+++ +IRN D + + F +E Sbjct: 360 RDVVRRRSEFELDEAEERAHILEGRLRALDNIDDVVELIRNADDRDGARSGLQGTFDFSE 419 Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485 Q + I+ ++L SL LE +I++E +++ A E+++++L + I E+ E+KE Sbjct: 420 KQAEHIVRMQLGSLTSLESEEIEAEYEDVTARIERLETILGDESELLGVIKEELLEMKEK 479 Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS---- 541 ++ RRT E + ++ +I +E + VV++ + +++ + D Sbjct: 480 YADE-----RRTKIVEDT---SEVTREDLIAEEDVFVVVTEQDYVKRMPIEQFDAQGRGG 531 Query: 542 ----ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLID 595 KE D++ A+T D +L + G+ Y L + +S G++ ++D Sbjct: 532 KGIIGADVKEDDTVSKVFRANTHDYLLCFTNHGQVYRLKTYEIPEMSRTARGKSAVNILD 591 Query: 596 LNHNQDIVTAFVYD 609 L+ +DI D Sbjct: 592 LDKGEDITAVITTD 605 >gi|83814088|ref|YP_446304.1| DNA gyrase, A subunit [Salinibacter ruber DSM 13855] gi|83755482|gb|ABC43595.1| DNA gyrase, A subunit [Salinibacter ruber DSM 13855] Length = 910 Score = 387 bits (995), Expect = e-105, Method: Compositional matrix adjust. Identities = 248/710 (34%), Positives = 385/710 (54%), Gaps = 91/710 (12%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 V +++ ++ Y+ Y++S I RA+PD+RDG KPVHRR+++ M E+GL GA +KKSA Sbjct: 8 VIPINIEEEMKSSYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMHELGLTQGANYKKSA 67 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 RIVGEV+GK HPHGD SVYD+LVR+AQ F RYPL GQGNFG++DGDSAAA RYTEARM Sbjct: 68 RIVGEVLGKYHPHGDSSVYDTLVRMAQHFSMRYPLADGQGNFGSVDGDSAAAMRYTEARM 127 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 T++AE +L + ++ VD ++ ++ EP V P+ FPN+L NG GIAVGMAT IP HN+ Sbjct: 128 TRIAEQMLTDIGKETVDTQENFDGTMEEPTVLPAAFPNMLVNGADGIAVGMATKIPPHNL 187 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E +A +A ID+P+I I+ L++++ PDFPTGGII + E+Y GRG +RA+ Sbjct: 188 GETIDATVAYIDDPDIEIDNLMDHLPAPDFPTGGIIY-GYAGVYEAYHTGRGRVVMRAKM 246 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFP 315 EEV G +VVTE+PYQV KSR +E+IA+ + +RI + D+RDES D +RIV+ Sbjct: 247 HEEEVRSGRDALVVTELPYQVNKSREVERIADRVRQERIEGIADLRDESDRDGLRIVIEL 306 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 K + + +++ ++ S ++ F +NM L GR PQV+ L ++ ++ HR E++ RR Sbjct: 307 K-QGANAEIVKNQVYKHSRLQDTFGVNMVALVGGR-PQVVTLKDAIRHYVDHRHEIVVRR 364 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---------------------EDKPK 414 + + + R IL+GL +A ++D +IAIIR+ +D + Sbjct: 365 TEYDLAQAQDRAHILEGLTLALDHLDAVIAIIRHSPDTGTARQNLRAGRYPDALSDDDLR 424 Query: 415 PVMV-----SRFSLTENQVDAILN------------------------LRLR--SLRKLE 443 + V ++ V A+L LRLR L LE Sbjct: 425 TINVPLTPPGEADEEQDTVQALLGDEYEELVQQPDEGDWLTEAQANAILRLRLSRLTGLE 484 Query: 444 EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVS 503 +I E ++++ + + +LNS ++ I E+ VKE F R T + + Sbjct: 485 REKIIGEYEDIIEQIREYQRILNSRDRRMALIKEELLTVKERFDDE------RRTEIDYT 538 Query: 504 RADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIAL 555 D ++ +IE++ + V I+N+G R+ V + +E D ++ Sbjct: 539 GGDDIIIED-LIERQHVVVTITNQGLTKRTPIDTYRTQGRGGVGMRGTGKREDDFIEHLY 597 Query: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613 H+ D +LL + G+ + L + G G +I+ LID++ D + Sbjct: 598 VCHSHDVLLLFTDKGQCFWLRPFEIPEGGRTAKGRSIRQLIDIDP----------DDRVR 647 Query: 614 LLVVSSKGN----AFIVEESEIIANTRKG---KTFLKVSSEEKMKLVVKV 656 ++ SK N AF+ ++A TR+G KT L+ S + ++ + Sbjct: 648 AVISVSKENFEDEAFL-NSHYVLAATRQGQVKKTALEAYSRPRSNGIIGI 696 >gi|302384450|ref|YP_003820272.1| DNA gyrase, A subunit [Clostridium saccharolyticum WM1] gi|302195078|gb|ADL02649.1| DNA gyrase, A subunit [Clostridium saccharolyticum WM1] Length = 853 Score = 387 bits (995), Expect = e-105, Method: Compositional matrix adjust. Identities = 248/679 (36%), Positives = 382/679 (56%), Gaps = 53/679 (7%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 + V V L+ +E+ Y+ YA+S I RA+PD+RDG KPV RR++++M E+ +K Sbjct: 7 DKVHDVDLKKTMEKSYIDYAMSVIVSRALPDVRDGLKPVQRRVLYSMIELNNGPDKPHRK 66 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 ARIVG+ +GK HPHGD S+Y +LV LAQ + RYPL+ G GNFG++DGD AAA RYTEA Sbjct: 67 CARIVGDTMGKYHPHGDSSIYGALVNLAQEWSTRYPLVDGHGNFGSVDGDGAAAMRYTEA 126 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 R+++++ +L +++D VDF ++E + EP V PS++PNLL NGTSGIAVGMAT+IP H Sbjct: 127 RLSKISMEMLADINKDTVDFSPNFDETEREPDVLPSRYPNLLVNGTSGIAVGMATNIPPH 186 Query: 195 NVQEICEAALALIDNP-----EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249 N++E+ A + +IDN E ++E++LE I GPDFPTG I+ R I E+YR GRG Sbjct: 187 NLREVISAVVHIIDNQVEENRETTMEEILEIIKGPDFPTGATILGKR-GIEEAYRTGRGK 245 Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309 RVRA +E + G I+VTE+PY V K+RLIEKIAEL+ K++ + D+RDES Sbjct: 246 IRVRAVSDIEAMANGKNRIIVTELPYMVNKARLIEKIAELVKDKKVDGITDLRDESDRSG 305 Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL---SMGRV-PQVMPLDGILKEWL 365 + R + ++++ + + ++ F + M L S G + P+V+ + +L +L Sbjct: 306 MRICIELRRDANANVVLNQLIKHTQLQDTFGVIMLALVKNSAGVLEPKVLNILQMLNYYL 365 Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFS 422 H++EV+ RR+ + + + R IL+GLLIA NIDE+I IIR N K ++SRF Sbjct: 366 DHQKEVVTRRTRYDLNKAEERAHILQGLLIALDNIDEVIRIIRGSENVQAAKAELMSRFG 425 Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482 L++ Q AI+++RLR+L LE ++++E L A ++ S+L K+ I E+ Sbjct: 426 LSDVQSQAIVDMRLRALTGLEREKLENEYRELEARIAELKSILADEKKLLGVIK---EEI 482 Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD--- 539 I +K D R F E + + +I E V ++ G+I+ + SVD Sbjct: 483 SIISAKYGDDRRTSIGFDEFDMS-----MEDLIPDESTIVAMTKLGYIKRM---SVDNFK 534 Query: 540 --------LSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGH 586 + + + D ++ + T ++ + G K Y +P G+ S Sbjct: 535 NQNRGGRGIKGMQTIDQDYIEDLMMTTTHHYLMFFTNTGRVYRLKTYMIPEGSRTS---R 591 Query: 587 GEAIQLLIDLNHNQDIVTAFV----YDSTCKLLVVSSKGNAFIVEESEII--ANTRKGKT 640 G AI L+ + + I TA + YD L + + G +V+++ ++ AN RK Sbjct: 592 GTAIVNLLQMLPGESI-TAIIPMKEYDDDKFLFMATRNG---MVKKTPMMEYANVRKNGL 647 Query: 641 FLKVSSEEKMKLVVKVTGD 659 V E + VK T D Sbjct: 648 QAIVLRENDELIEVKATDD 666 >gi|78065625|ref|YP_368394.1| DNA gyrase subunit A [Burkholderia sp. 383] gi|77966370|gb|ABB07750.1| DNA gyrase subunit A [Burkholderia sp. 383] Length = 867 Score = 387 bits (995), Expect = e-105, Method: Compositional matrix adjust. Identities = 235/620 (37%), Positives = 346/620 (55%), Gaps = 70/620 (11%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 SL + YL YA+S I RA+PD+RDG KPVHRR++ AM E+ D+ A+KKSARIV Sbjct: 11 TSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRAYKKSARIV 70 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGD +VYD++VR+AQ F RY LI GQGNFG+IDGD+AAA RYTE RM ++ Sbjct: 71 GDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLIDGQGNFGSIDGDNAAAMRYTEIRMAKI 130 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 +L +D++ VDF Y+ + +P V PS+ PNLL NG+SGIAVGMAT+IP HN+ E+ Sbjct: 131 GHELLADIDKETVDFEPNYDGNEMQPSVLPSRIPNLLINGSSGIAVGMATNIPPHNLNEV 190 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 +A L+ NPE +I++L+E I PDFPT GII + + YR GRG +RA E Sbjct: 191 VDACQHLLGNPEATIDELIEIIPAPDFPTAGIIY-GVAGVRDGYRTGRGRVVMRAATHFE 249 Query: 260 EVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318 E+ RG I+V E+PYQV K L+E+IAEL+ K++ + DIRDES + V+ R Sbjct: 250 EIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKR 309 Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378 P++++ +++ + ++ F +NM L G+ P+++ L IL+ +L+HRREVL RR+ + Sbjct: 310 GEVPEVVLNNLYKATQLQDTFGMNMVALVDGQ-PKLLNLKEILQCFLSHRREVLTRRTIY 368 Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---------KP-------VMVSR-- 420 ++ R +L+GL +A NIDE IAII+ P KP M++R Sbjct: 369 ELRKARERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKAELMAKPWDSSLVREMLTRAE 428 Query: 421 ----------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELD 452 + L++ Q IL +RL+ L LE+ +I E Sbjct: 429 SENAAAGGRSAYRPEGLNPAFGMQVDGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEYR 488 Query: 453 NLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ 512 ++A+ + +L ++ I E+ VK F G R + E++ + T + Sbjct: 489 EVMAQIADLLDILARPERITTMIGEELTSVKAEF------GDARRSKIELNATELNT--E 540 Query: 513 AMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRIL 564 +I + + V +S+ G++ R+ K A KE D ++ A+T D IL Sbjct: 541 DLITPQDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYIL 600 Query: 565 LLSTDG-----KAYTLPAGN 579 S G K Y +P G+ Sbjct: 601 CFSNRGRVYWVKVYEVPQGS 620 >gi|107022118|ref|YP_620445.1| DNA gyrase subunit A [Burkholderia cenocepacia AU 1054] gi|105892307|gb|ABF75472.1| DNA gyrase subunit A [Burkholderia cenocepacia AU 1054] Length = 867 Score = 387 bits (995), Expect = e-105, Method: Compositional matrix adjust. Identities = 235/620 (37%), Positives = 347/620 (55%), Gaps = 70/620 (11%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 SL + YL YA+S I RA+PD+RDG KPVHRR++ AM E+ D+ A+KKSARIV Sbjct: 11 TSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRAYKKSARIV 70 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGD +VYD++VR+AQ F RY LI GQGNFG+IDGD+AAA RYTE RM ++ Sbjct: 71 GDVIGKYHPHGDIAVYDTIVRMAQDFSLRYMLIDGQGNFGSIDGDNAAAMRYTEIRMAKI 130 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 +L +D++ VDF Y+ + +P V PS+ PNLL NG+SGIAVGMAT+IP HN+ E+ Sbjct: 131 GHELLADIDKETVDFEPNYDGNEMQPSVLPSRIPNLLINGSSGIAVGMATNIPPHNLNEV 190 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 +A L+ NPE +I++L+E I PDFPT GII + + YR GRG +RA E Sbjct: 191 VDACQHLLGNPEATIDELIEIIPAPDFPTAGIIY-GVAGVRDGYRTGRGRVVMRAATHFE 249 Query: 260 EVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318 E+ RG I+V E+PYQV K L+E+IAEL+ K++ + DIRDES + V+ R Sbjct: 250 EIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKR 309 Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378 P++++ +++ + ++ F +NM L G+ P+++ L IL+ +L+HRREVL RR+ + Sbjct: 310 GEVPEVVLNNLYKATQLQDTFGMNMVALVDGQ-PKLLNLKEILQCFLSHRREVLTRRTIY 368 Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---------KP-------VMVSR-- 420 ++ R +L+GL +A NIDE IAII+ P KP M++R Sbjct: 369 ELRKARERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMAKPWDSSLVREMLTRAE 428 Query: 421 ----------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELD 452 + L++ Q IL +RL+ L LE+ +I E Sbjct: 429 SENAAAGGRSAYRPEGLNPAFGMQTDGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEYR 488 Query: 453 NLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ 512 +++A+ + +L ++ I E+ VK F G R + E++ + T + Sbjct: 489 DVMAQIADLLDILARPERITTMIGDELTSVKAEF------GDARRSKIELNATELNT--E 540 Query: 513 AMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRIL 564 +I + + V +S+ G++ R+ K A KE D ++ A+T D IL Sbjct: 541 DLITPQDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYIL 600 Query: 565 LLSTDG-----KAYTLPAGN 579 S G K Y +P G+ Sbjct: 601 CFSNRGRVYWVKVYEVPQGS 620 >gi|254481894|ref|ZP_05095137.1| DNA gyrase, A subunit [marine gamma proteobacterium HTCC2148] gi|214038023|gb|EEB78687.1| DNA gyrase, A subunit [marine gamma proteobacterium HTCC2148] Length = 886 Score = 387 bits (995), Expect = e-105, Method: Compositional matrix adjust. Identities = 253/732 (34%), Positives = 404/732 (55%), Gaps = 69/732 (9%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 V++ +++ YL YA+S I RA+PD+RDG KPVHRR++ AM+E+ D+ A+KKSAR+V Sbjct: 11 VNIEDEMKQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELNNDWNKAYKKSARVV 70 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGD +VYD++VR+AQPF RY ++ GQGNFG++DGD+AAA RYTE RM ++ Sbjct: 71 GDVIGKYHPHGDSAVYDTIVRMAQPFSMRYLMVDGQGNFGSVDGDNAAAMRYTEIRMKKI 130 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 + +L +D++ VDF D Y+ + P V P++ P LL NG+SGIAVGMAT+IP HN+ E+ Sbjct: 131 SHQMLADLDKETVDFVDNYDGTERIPAVLPTRVPTLLVNGSSGIAVGMATNIPPHNLTEV 190 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW-CV 258 LAL+ +P++++++L+E+I GPDFPTG II R I+++YR GRG VRAR + Sbjct: 191 VSGCLALLGDPDLTVDELMEHIPGPDFPTGAII-NGRAGIIQAYRTGRGRIYVRARAEVI 249 Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318 + RG I+V EIPYQ+ K++LIE+IAEL+ K+I + ++RDES +D V+ R Sbjct: 250 HDEKRGKDIIIVHEIPYQLNKAKLIERIAELVKEKKIEGITELRDESDKDGLRVVIELRR 309 Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378 D+++ +++ + +++ F +NM L G+ P+++ L IL+ ++ HRREV+ RR+ + Sbjct: 310 GEVGDVVLNNLYAQTQLQSVFGINMVALVDGQ-PKILNLKEILEAFVRHRREVVTRRTVY 368 Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSR--------------- 420 ++ R +L+GL IA NID +I +I+ + + K +++R Sbjct: 369 LLRKARERGHLLEGLAIALANIDPVIELIKASPSSAEAKEKLIARSWRPGDVTGMLERAG 428 Query: 421 -------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKI 461 + L+ Q AIL LRL L LE ++ +E + L E + Sbjct: 429 DDACRPDELDPQFGLRDGLYYLSPAQAQAILELRLHRLTGLEHEKLLNEYEEKLREIAEY 488 Query: 462 DSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPIT 521 +L+ + I E+ E+ T+ G R T S+ D + +I +E Sbjct: 489 LEILSDADRLKAVIREELEEI------VTEYGDERRTEITASQHDLTV--EDLITEEDRV 540 Query: 522 VVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573 V IS+ G+ ++ + + SA K+ D ++ L A T IL S GK Y Sbjct: 541 VTISHGGYAKTQPLTDYQAQRRGGMGKSATAVKDEDFVEHLLIASTHATILCFSNLGKVY 600 Query: 574 TLPAGNL-LSGRG-HGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEE 628 L + L+GR G + L+ L + + + Y + + ++ G V++ Sbjct: 601 WLKVYQIPLAGRNSRGRPMINLLPLEEGERVTSILPVEDYTEGHYIFMATASGT---VKK 657 Query: 629 SEIIANTRKGKTFLKVSSEEKMKLVVK---VTGD-HVAVVGENRKLLIFSIDQIPEMSR- 683 + +I R+ L+ E+ ++V TGD V ++ K + F + M R Sbjct: 658 TALINFARQRSVGLRALELEEGDVLVGTAVTTGDCDVMLLSSEGKAVRFKEGDVRAMGRT 717 Query: 684 GKGVRLQSYKDG 695 +GVR DG Sbjct: 718 ARGVRGIKLGDG 729 >gi|322807082|emb|CBZ04656.1| topoisomerase IV subunit A [Clostridium botulinum H04402 065] Length = 956 Score = 387 bits (994), Expect = e-105, Method: Compositional matrix adjust. Identities = 231/661 (34%), Positives = 385/661 (58%), Gaps = 41/661 (6%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 + N+ + L A+ E YL YA+ KERA+PD+RDG KPV RRI++ + + Sbjct: 10 DNNIISFPLEEAMPENYLPYAVEVSKERALPDVRDGLKPVQRRIVYGSYMLKAFPDKPYY 69 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSARIVG+++GK HPHGD SVYD++V LAQ F R PLI G GN+G+ DGDSAAA RYTE Sbjct: 70 KSARIVGDILGKYHPHGDSSVYDAMVILAQDFTTRMPLIDGHGNWGSQDGDSAAAMRYTE 129 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 AR+T +A +++ +D+D V+ D Y+ + EP V P+KFPN+L NG GIAVG+AT+IP Sbjct: 130 ARLTPIAMEMIRDIDKDVVNMVDNYSNSEKEPEVLPAKFPNILVNGAFGIAVGLATNIPP 189 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E+ + LA ID EI+ ++LL YI GPD PTGG+I+ ++S++ +Y G G +R Sbjct: 190 HNLGEVIDGTLAYIDKNEITTKELLNYIKGPDLPTGGVII-GKKSMLSAYETGEGRVTLR 248 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR----IPLLEDIRDESAED- 308 A+ +E++ G IV+TE P++ K++L++ I+E+ K+ + + DIRDES + Sbjct: 249 AKTTIEKLENGRLAIVITEFPFRKNKAKLLQFISEMTADKKHSKALENITDIRDESDRNG 308 Query: 309 VRIVL-FPKNRSLD-PDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366 +R V+ F K + D + ++ ++ +D+++ NM L+ G+ P+ + L +LK ++ Sbjct: 309 IRAVIEFKKIATQDVVEKTLKYLYKKTDLQSNISFNMVALADGK-PKTLGLKSMLKYYVE 367 Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSL 423 H++EV+ RR+ ++ ++R I++G + A +DEII IR K ++ +FS Sbjct: 368 HQKEVITRRTKRELEIAEKRFHIVEGFIKAIGIMDEIIKTIRESKSKKNARENLIEKFSF 427 Query: 424 TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483 T+ Q +AIL L L L LE + E L K+ +L S K+ I E+ EVK Sbjct: 428 TDIQAEAILELMLYKLTGLEVVAFEKEYKELEKLINKLTKILKSEKELLKVIKKELIEVK 487 Query: 484 EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSH---SV 538 E ++ +RRT+ E K +++ ++E E + + +SN G+ + +LKS+ S Sbjct: 488 ETYN-----DKRRTSIIEDDEKAKIDVEEIIVE-EDVVLTLSNEGFTKRIALKSYNRSSA 541 Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL-----L 593 ++ + ++EGD + + +T D + L++ +G Y + N+ + + ++L Sbjct: 542 NVEDIEYREGDFNRFLIQCNTKDTLCLVTKEGNMYQIKVINIPEFKWKEKGVKLDEIIKT 601 Query: 594 IDLNHNQDIVTAF---VYDSTCKLLVVSSKG-------NAFIVEESEIIA-NTRKGKTFL 642 IDL ++ I+ AF + + +L ++ G + F ++I+A +KG++ + Sbjct: 602 IDL--SETIMEAFSIEAFTAQKDMLFITDSGYIKKTTLDKFNTNYTKIMALKLKKGESLV 659 Query: 643 K 643 K Sbjct: 660 K 660 >gi|309389292|gb|ADO77172.1| DNA gyrase, A subunit [Halanaerobium praevalens DSM 2228] Length = 794 Score = 387 bits (994), Expect = e-105, Method: Compositional matrix adjust. Identities = 222/598 (37%), Positives = 365/598 (61%), Gaps = 21/598 (3%) Query: 13 VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72 ++E + +++ +++ YL Y+LS I RA+PD+RDG KPVHRRI+ A E+GL A Sbjct: 1 MKEEIYPIAIEDKMKDAYLNYSLSVIIGRALPDVRDGLKPVHRRILFAARELGLFHSKAH 60 Query: 73 KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132 KKSAR+VGEV+GK HPHGD +VYD++VR+AQ F QRY LI GQGNFG+IDGDSAAA RYT Sbjct: 61 KKSARLVGEVLGKFHPHGDSAVYDAMVRMAQDFNQRYQLIDGQGNFGSIDGDSAAAMRYT 120 Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192 E ++T++AE +L +D+ V+F D ++ EP V PSK PNLL NG+SGIAVGM+TSIP Sbjct: 121 ETKLTEIAEALLANIDQKTVNFVDNFDGSLQEPEVLPSKIPNLLVNGSSGIAVGMSTSIP 180 Query: 193 SHNVQEICEAALALIDNPEISIEKLLE-YIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251 HN+ E+ +A + L+D P +E +++ ++ GPDFPTG I+ + I +Y+ G+G Sbjct: 181 PHNLGEVIDALVHLLDYPNARLETIIKNHLPGPDFPTGASII-GNDGIKAAYQSGKGKIT 239 Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVR 310 +RA+ +E+ R +++TEIPYQV KS+LIE+IAEL+ +I + D+RDES + +R Sbjct: 240 LRAKSKIEKKKR-HKNLIITEIPYQVNKSKLIEEIAELVNKGKISSVSDLRDESDKKGIR 298 Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370 IV+ K + DP+L + ++ ++++ F +N+ ++ + P VM L IL +L R+E Sbjct: 299 IVIELKANA-DPELTLNRLYKYTNLQNNFRINLLAIN-DKKPVVMGLLEILNHFLDFRKE 356 Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP---VMVSRFSLTENQ 427 ++ S + + + R IL+GL A +D +I +IRN + K +V + ++E Q Sbjct: 357 IIKNHSKYNLTKAENRYHILEGLKKAIDQLDIVIDVIRNSEAKKEAKAKLVKKLKISERQ 416 Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487 +IL ++L+ L +E ++++E +L + + ++LN+ ++ + + E++E+K+ FS Sbjct: 417 AQSILEMQLQRLVGMEFEKLEAEKKDLAQKIKYYKNILNNEEELKSVLRAELKEIKKKFS 476 Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKE 547 RR + S+A+ + +I+++ + +S RG I+ + + L + Sbjct: 477 DP----RRTDIIADDSKAE--ITKNDLIKEKKAIISLSYRGIIK----RNDEYKNLRTAK 526 Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDIV 603 D L + + D++L S G+ Y L N+ G GE + + + N+ I+ Sbjct: 527 NDYLISTVGGSSLDQLLFFSNQGEVYNLQVHNIEEHHGLATGENLSKYLQIPINESII 584 >gi|229826858|ref|ZP_04452927.1| hypothetical protein GCWU000182_02242 [Abiotrophia defectiva ATCC 49176] gi|229788476|gb|EEP24590.1| hypothetical protein GCWU000182_02242 [Abiotrophia defectiva ATCC 49176] Length = 832 Score = 387 bits (994), Expect = e-105, Method: Compositional matrix adjust. Identities = 216/579 (37%), Positives = 337/579 (58%), Gaps = 26/579 (4%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 + + V L+ +E+ Y+ YA+S I RA+PD+RDG KPV RRI++AM E+ +K Sbjct: 7 DRINEVDLKKTMEDSYIDYAMSVIASRALPDVRDGLKPVQRRILYAMKELSNTPDKPHRK 66 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 ARIVG+ +GK HPHGD S+Y +LV LAQ + RY L+ G GNFG++DGD AAA RYTEA Sbjct: 67 CARIVGDTMGKYHPHGDSSIYGALVNLAQSWSTRYMLVDGHGNFGSVDGDGAAAMRYTEA 126 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 R+++++ +L +++D VDF ++E + EP V PS++PNLL NG SGIAVGMAT+IP H Sbjct: 127 RLSKISVEMLSDIEKDTVDFIPNFDETEKEPTVLPSRYPNLLVNGASGIAVGMATNIPPH 186 Query: 195 NVQEICEAALALIDNP-----EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249 N+ E+ A +IDN + I+++L+ + GPDFPTG I+ R I E+YR GRG Sbjct: 187 NLVEVINAVNKIIDNKVEEDRDTDIDEILQIVKGPDFPTGAHIL-GRAGIEEAYRTGRGK 245 Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309 VRA +E + G IVVTE+PY V K+RLIE IA+++ KRI + ++RDES + Sbjct: 246 IIVRAVTDIEPMANGKNRIVVTELPYLVNKARLIEYIADMVKNKRIDGITELRDESNRNG 305 Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369 + R ++P ++++ ++ + ++T F NM L + P VM L +L +L H+ Sbjct: 306 MRICIELRRDVNPHIILKKLYKHTQLQTTFGTNMLGL-VNNEPVVMNLKQMLGFYLEHQE 364 Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTEN 426 V+ RRS + + + R IL+GLL+A IDE+I+IIR + K ++ RFSL + Sbjct: 365 NVVRRRSQYELNKAEERAHILQGLLMALDYIDEVISIIRGSKTTAEAKEKLIGRFSLDDV 424 Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486 Q AI+++RLR+L LE +++ E D+L +++ +L K+ I EI +++ + Sbjct: 425 QAQAIVDMRLRALTGLEREKLQGEYDSLQERIKELKEILGDIKKLLGVIKEEINVIRDKY 484 Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD------- 539 RR+ ++ D +I E + ++N G+I+ + + + Sbjct: 485 GDE-----RRS---QIVADDSDITNDDLIPDENTVIAMTNMGYIKRMTTDNFKSQNRGGK 536 Query: 540 -LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPA 577 + + E D ++ L T IL + G+ Y L A Sbjct: 537 GIKGMQTIEEDFIEDLLMTTTHHYILFFTNKGRVYRLKA 575 >gi|170077448|ref|YP_001734086.1| DNA gyrase subunit A [Synechococcus sp. PCC 7002] gi|169885117|gb|ACA98830.1| DNA gyrase, A subunit [Synechococcus sp. PCC 7002] Length = 841 Score = 387 bits (994), Expect = e-105, Method: Compositional matrix adjust. Identities = 232/585 (39%), Positives = 345/585 (58%), Gaps = 34/585 (5%) Query: 30 YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89 YL YA+S I RA+PD RDG KPVHRRI++AM E+GL F+K AR+VGEV+GK HPH Sbjct: 5 YLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTPDRPFRKCARVVGEVLGKYHPH 64 Query: 90 GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVA-ELILQGVD 148 GD +VYD+LVR+AQ F R PLI+G GNFG+ID D AAA RYTE R+ +A +L+ ++ Sbjct: 65 GDTAVYDALVRMAQDFSMRDPLINGHGNFGSIDNDPAAAMRYTECRLQSLATNALLRDIE 124 Query: 149 EDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208 + VDF D ++ EPVV PS+ P LL NG+SGIAVGMAT+IP HN+ EI + ALI Sbjct: 125 SETVDFADNFDGSQQEPVVLPSRIPQLLVNGSSGIAVGMATNIPPHNLGEIIDGVTALIH 184 Query: 209 NPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEV---GRGS 265 NPEI+I++L+++I PDFPTG I+ R I ++Y GRG +R +E + GR Sbjct: 185 NPEITIKELMQFIPAPDFPTGAQIL-GRSGIKDAYMTGRGSITMRGVAEIETLRQNGREK 243 Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFPKNRSLDPDL 324 I+VT++PYQ K+ LIE+IA+++ K+I + DIRDES + +RIV+ K R P + Sbjct: 244 EAIIVTQLPYQTNKAALIERIADMVNDKKIDGISDIRDESDRQGMRIVIELK-RDAYPRV 302 Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384 ++ +++ + ++ F NM L G PQ++ L L+ +L R EV+ RR+ + ++ Sbjct: 303 VLNNLYKHTPLQANFGANMLALVNGE-PQLLNLKQFLQVFLDFRVEVITRRTRYELRKAQ 361 Query: 385 RRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAILNLRLRSLRK 441 R IL+GLLIA N+D +I +IR + ++ ++L++ Q DAIL ++LR L Sbjct: 362 ERDHILQGLLIALDNLDAVIHLIRQAADTAIARQGLMDGYNLSQAQADAILQMQLRRLTA 421 Query: 442 LEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCE 501 LE +I++E +LL + ++ +L ++ + I E+ E+K I RRT Sbjct: 422 LEADKIEAEHQDLLLKITDLEDILARRERVYAIIEAELTEIKTIHQSD-----RRTELV- 475 Query: 502 VSRADKATLQQA-MIEKEPITVVISNRGWIRSLKSHSVDL--------SALHFKEGDSLK 552 D LQ +I E ++++ +G+I+ + + D +A KE D + Sbjct: 476 ---LDDGDLQDIDLIANEQAAILLTEQGYIKRMPVATFDAQNRATRGKAATKMKEDDGVD 532 Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNL----LSGRGHGEAIQLL 593 L D +L + G Y+L A + + RG AIQLL Sbjct: 533 HFLTCCDHDHVLFFTERGVVYSLSAYQIPQSSRTARGL-PAIQLL 576 >gi|217077633|ref|YP_002335351.1| DNA gyrase, A subunit [Thermosipho africanus TCF52B] gi|217037488|gb|ACJ76010.1| DNA gyrase, A subunit [Thermosipho africanus TCF52B] Length = 806 Score = 387 bits (994), Expect = e-105, Method: Compositional matrix adjust. Identities = 251/738 (34%), Positives = 412/738 (55%), Gaps = 43/738 (5%) Query: 26 LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85 L+E YL+Y++S I RAIPD+RDG KPV RRI+++M E+G+ FKKSARIVGEV+GK Sbjct: 11 LKESYLSYSMSVIIGRAIPDVRDGLKPVQRRILYSMYELGVTHNKPFKKSARIVGEVMGK 70 Query: 86 LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145 HPHGD ++YD++VR+AQ + RY LI GQGNFG+ID D AA RYTEAR+ ++AE +L+ Sbjct: 71 YHPHGDAAIYDTIVRMAQDWTMRYKLIDGQGNFGSIDRDPPAAMRYTEARLAKIAEELLE 130 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 +D++ V+ D ++ EP V PSKFPNLLANG++GIAVGM T+IP HN+ E+ +A Sbjct: 131 DIDKETVNMTDNFDGSLKEPEVLPSKFPNLLANGSTGIAVGMTTNIPPHNITELVNGLIA 190 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265 LI NPEISIE+L+ +I GPDFPTGG I+ + I E Y G+G F +R + VEE + Sbjct: 191 LIKNPEISIEELMNFIPGPDFPTGGEII-GKSGIREMYTTGKGSFTIRGKVHVEEK-KKK 248 Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFPKNRSLDPDL 324 IV+TEIP+ + K+ LI+KI E +P ++DIRDES E +RIV+ N + + ++ Sbjct: 249 KNIVITEIPFNISKADLIKKIVEYAEKSSLP-IKDIRDESDKEGLRIVIEIPNDT-NEEI 306 Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384 ++ +++ + +++ F + V+ + P +M L ++ ++ HR EV+ RR+ + + Sbjct: 307 IINNLYKHTQLQSSFHSQLLVIDKEKKPVLMNLKELMWAFVEHRFEVVRRRAQYYYKQYS 366 Query: 385 RRVEILKGLLIAYLNIDEIIAIIRN-EDKPKPV--MVSRFSLTENQVDAILNLRLRSLRK 441 ++ IL+GL+ A +ID II++IRN ED+ + ++ F+ TE Q AI++LRL L K Sbjct: 367 KKAHILEGLIKASRSIDTIISVIRNSEDQNSAIHELIDMFNFTETQAKAIVDLRLGRLTK 426 Query: 442 LEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS-----TDLGRRR 496 LE ++ + ++L+ + + L+ + ++ + +I E+ +K + S D R+ Sbjct: 427 LEISKLIDDYNDLVNKMKVEKELIENDQKVYEKIIEELEAIKSEYGDSRKSIILDHEERK 486 Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSVD------LSALHFKEG 548 F E+ +I + + + ++ +G+++ SL + ++ + + Sbjct: 487 IEFNELE----------LIPDKEVVLSLTKKGYLKMMSLDTFKTQRRGGKGVTGSNLMDD 536 Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDIVTAF 606 D++ ++ H + L ++ GK Y L + S G I +++ ++ I+T Sbjct: 537 DAIMEIIYTHLHGKTLFFTSYGKVYILNNYQIEENSRTSRGRQIAKYLNIGQDEKILTML 596 Query: 607 VYDS-TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVV 664 D+ +L V+ G A E +G + ++ + V K+ D ++ Sbjct: 597 SVDNFEGELFFVTKNGKAKRTSLKEFENINSRGMKAITFDGDDLLVSVQKIDNPDQTILI 656 Query: 665 GENRKLLI-FSIDQIPEMSRGK----GVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719 L I F I ++ M R G+RL S D +S + L + S G Y Sbjct: 657 ATKNGLCIRFPISEVRTMGRNAMGVIGIRL-SNDDAVVSSSLLMDDEHYLLTVTSKG--Y 713 Query: 720 NRSENDLLGWLGKRGGVG 737 + + KRGG+G Sbjct: 714 GKLTETSQYRIQKRGGLG 731 >gi|170732351|ref|YP_001764298.1| DNA gyrase subunit A [Burkholderia cenocepacia MC0-3] gi|169815593|gb|ACA90176.1| DNA gyrase, A subunit [Burkholderia cenocepacia MC0-3] Length = 851 Score = 387 bits (994), Expect = e-105, Method: Compositional matrix adjust. Identities = 233/610 (38%), Positives = 344/610 (56%), Gaps = 70/610 (11%) Query: 30 YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89 YL YA+S I RA+PD+RDG KPVHRR++ AM E+ D+ A+KKSARIVG+VIGK HPH Sbjct: 5 YLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRAYKKSARIVGDVIGKYHPH 64 Query: 90 GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDE 149 GD +VYD++VR+AQ F RY LI GQGNFG+IDGD+AAA RYTE RM ++ +L +D+ Sbjct: 65 GDTAVYDTIVRMAQDFSLRYMLIDGQGNFGSIDGDNAAAMRYTEIRMAKIGHELLADIDK 124 Query: 150 DAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDN 209 + VDF Y+ + +P V PS+ PNLL NG+SGIAVGMAT+IP HN+ E+ +A L+ N Sbjct: 125 ETVDFEPNYDGNEMQPSVLPSRIPNLLINGSSGIAVGMATNIPPHNLNEVVDACQHLLGN 184 Query: 210 PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS-WCI 268 PE +I++L+E I PDFPT GII + + YR GRG +RA EE+ RG I Sbjct: 185 PEATIDELIEIIPAPDFPTAGIIY-GVAGVRDGYRTGRGRVVMRAATHFEEIDRGQRMAI 243 Query: 269 VVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMES 328 +V E+PYQV K L+E+IAEL+ K++ + DIRDES + V+ R P++++ + Sbjct: 244 IVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKRGEVPEVVLNN 303 Query: 329 IFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVE 388 ++ + ++ F +NM L G+ P+++ L IL+ +L+HRREVL RR+ + ++ R Sbjct: 304 LYKATQLQDTFGMNMVALVDGQ-PKLLNLKEILQCFLSHRREVLTRRTIYELRKARERGH 362 Query: 389 ILKGLLIAYLNIDEIIAIIRNEDKP---------KP-------VMVSR------------ 420 +L+GL +A NIDE IAII+ P KP M++R Sbjct: 363 VLEGLAVALANIDEFIAIIKAAPTPPIAKQELMAKPWDSSLVREMLTRAESENAAAGGRS 422 Query: 421 ------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKID 462 + L++ Q IL +RL+ L LE+ +I E +++A+ + Sbjct: 423 AYRPEGLNPAFGMQTDGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEYRDVMAQIADLL 482 Query: 463 SLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITV 522 +L ++ I E+ VK F G R + E++ + T + +I + + V Sbjct: 483 DILARPERITTMIGDELTSVKAEF------GDARRSKIELNATELNT--EDLITPQDMVV 534 Query: 523 VISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG---- 570 +S+ G++ R+ K A KE D ++ A+T D IL S G Sbjct: 535 TMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYILCFSNRGRVYW 594 Query: 571 -KAYTLPAGN 579 K Y +P G+ Sbjct: 595 VKVYEVPQGS 604 >gi|89070135|ref|ZP_01157464.1| DNA gyrase subunit A [Oceanicola granulosus HTCC2516] gi|89044252|gb|EAR50398.1| DNA gyrase subunit A [Oceanicola granulosus HTCC2516] Length = 903 Score = 387 bits (994), Expect = e-105, Method: Compositional matrix adjust. Identities = 253/727 (34%), Positives = 390/727 (53%), Gaps = 65/727 (8%) Query: 19 AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78 ++S+ + YL YA+S I RAIPDLRDG KPVHRRI++ + E G ++K Sbjct: 12 SISIEEEMRTSYLDYAMSVIVSRAIPDLRDGLKPVHRRILYTLWENGQTNNKPYRKCGTA 71 Query: 79 VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138 VG+V+G+ HPHGD ++YD+LVR+AQ F LI GQGNFG++DGD AAYRYTE R+ + Sbjct: 72 VGDVMGRYHPHGDSAIYDALVRMAQDFSMSLTLIDGQGNFGSMDGDPPAAYRYTEGRLEK 131 Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198 AE +L +++D VDF Y E EP V P+++PN+L NG GIAVGMAT IP HN+ E Sbjct: 132 SAEALLTDIEKDTVDFVPNYANERMEPRVLPARYPNILVNGAEGIAVGMATRIPPHNLGE 191 Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258 + +A LALIDNP+++ E+L+++I PDFPTGG+I+ R ++Y GRG +R + Sbjct: 192 VVDATLALIDNPDLTTEELIDFIPAPDFPTGGLIL-GRSGARKAYTEGRGSVVIRCKTRT 250 Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFPKN 317 EE+ + + IV+ EIPYQV K+ +IE+IAE KRI + ++DES VR+V+ K Sbjct: 251 EEIRKDRYAIVIDEIPYQVNKATMIERIAEAAREKRIEGIAHVQDESDRHGVRVVIELK- 309 Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377 R P++++ +F + M+ F NM L+ G+ P+ + L G L +L R +V+ +R++ Sbjct: 310 RDATPEVVLNQLFRFTPMQVSFACNMLALNGGK-PETLTLRGFLTAFLDFREDVVAKRTA 368 Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE--------------------------- 410 F + R IL GL +A N+DE++A IR+ Sbjct: 369 FELNKARERSHILCGLAVAVSNVDEVVATIRSSADAAEARQKLMERRWPAEEIAPYIRLI 428 Query: 411 DKPKPVMV--SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSG 468 D P M ++L++ QV AIL+LRL+ L +L ++ EL+ L A+ + +L S Sbjct: 429 DDPTHKMNDDGTYNLSDTQVRAILDLRLQRLTQLGVKEVTDELEALAAKIREYLDILGSR 488 Query: 469 KQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRG 528 ++ + ++ E+REV+E + RRT + S + +IE+E + V ++ G Sbjct: 489 ERILSIVSDELREVRERHAVP-----RRTEIVDWS---GDMEDEDLIEREDMVVTVTQGG 540 Query: 529 WI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL 580 +I RS K LS KE D + A+T ++L +TDG Y L L Sbjct: 541 YIKRTALADFRSQKRGGKGLSGGGLKEEDVVTTLFVANTHTQLLFFTTDGMVYKLKTWRL 600 Query: 581 -LSGR-GHGEAIQLLIDLNHNQDIVTAFVYD------STCKLLVVSSKGNAFIVEESEII 632 L GR G+AI ++ + I D ++ +S G+ S+ Sbjct: 601 PLGGRTSRGKAIVNILPIPPGVSIAAIMPVDRDEDEWDDLNIVFATSAGDVRRNRLSDFT 660 Query: 633 ANTRKGKTFLKVSSEEKMKLV---VKVTGDHVAVVGENRKLLIFSIDQI----PEMSRG- 684 R GK +K+ + + LV + D V +V + + + F + + S G Sbjct: 661 NVMRNGKIAMKLPEDGSVSLVNARICSEDDDVMLVTDAGRAIRFPVTDVRVFSGRSSTGV 720 Query: 685 KGVRLQS 691 +G+RLQ+ Sbjct: 721 RGIRLQN 727 >gi|225465333|ref|XP_002271674.1| PREDICTED: similar to DNA gyrase subunit A, chloroplastic/mitochondrial [Vitis vinifera] Length = 911 Score = 387 bits (994), Expect = e-105, Method: Compositional matrix adjust. Identities = 219/571 (38%), Positives = 337/571 (59%), Gaps = 34/571 (5%) Query: 28 ERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLH 87 E Y+AYA+S + RA+PD+RDG KPVHRRI+ AM E+GL +KK AR+VGEV+GK H Sbjct: 77 EAYMAYAMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPYKKCARVVGEVLGKFH 136 Query: 88 PHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE-LILQG 146 PHGD +VYDSLVR+AQ F R PLI G GNFG++D D AA RYTE R+ + E ++L Sbjct: 137 PHGDTAVYDSLVRMAQDFSLRCPLIQGHGNFGSVDADPPAAMRYTECRLEALTEAMLLAD 196 Query: 147 VDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALAL 206 +++D VDF ++ EP + P++ P LL NG+SGIAVGMAT+IP HN+ E+ + L Sbjct: 197 LEQDTVDFLPNFDNSQKEPSLLPARLPTLLLNGSSGIAVGMATNIPPHNIGELVDVLCVL 256 Query: 207 IDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS- 265 I NPE ++++LLEY+ GPDFPTGG+I+ I+E+YR GRG VR + VE + + Sbjct: 257 IRNPEATLQELLEYMPGPDFPTGGLIM-GNIGILEAYRTGRGRIIVRGKTEVELLDSKTK 315 Query: 266 -WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDL 324 +++ EIPYQ KS L+EKIAEL+ K + + DIRDES ++ R DP + Sbjct: 316 RTAVIIKEIPYQTNKSSLVEKIAELVENKSLDGISDIRDESDRSGMRIVIELKRGSDPSI 375 Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384 ++ ++ L+ +++ F NM + G+ P++M L +L+ +L R V+ RR+ F++ Sbjct: 376 VLNKLYRLTALQSSFSCNMIGILDGQ-PKLMGLKELLQAFLDFRCSVVERRARFKLSQAQ 434 Query: 385 RRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS-----RFSLTENQVDAILNLRLRSL 439 R I++G+++ N+D +I +I+ + P M S F L+E Q +AIL++ LR + Sbjct: 435 ERRHIVEGIVVGLDNLDAVIRVIK--EAPSNAMASTGLRNEFGLSERQAEAILDISLRRI 492 Query: 440 RKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTF 499 +LE + +E +L+ + K+ LL+S KQ I E E+K FS RR+ Sbjct: 493 TRLEREKFVTESKSLMEQISKLQELLSSRKQILQLIEQEAIELKNRFSTP-----RRSML 547 Query: 500 CEVSRADKATLQQA-MIEKEPITVVISNRGWIRSLKSHSVDL--------SALHFKEGDS 550 + D L+ +I E + + +S +G+++ +K ++ +L S + D+ Sbjct: 548 EDT---DSGQLEDVDVIPNEEMLLAVSEKGYVKRMKPNTFNLQNRGTIGKSVGKLRVNDA 604 Query: 551 LKIALHAHTTDRILLLSTDG-----KAYTLP 576 + + H D +L S G +AY +P Sbjct: 605 MSDFIVCHAHDYVLYFSDRGIVHSARAYKIP 635 >gi|241764515|ref|ZP_04762535.1| DNA gyrase, A subunit [Acidovorax delafieldii 2AN] gi|241366051|gb|EER60655.1| DNA gyrase, A subunit [Acidovorax delafieldii 2AN] Length = 885 Score = 387 bits (994), Expect = e-105, Method: Compositional matrix adjust. Identities = 276/812 (33%), Positives = 423/812 (52%), Gaps = 97/812 (11%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 +SL + YL YA+S I RA+PD RDG KPVHRR++ AM E+ D+ +KKSARIV Sbjct: 11 ISLEEEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHELNNDWNRPYKKSARIV 70 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGD +VYD++VR+AQ F R+ L+ GQGNFG++DGD+AAA RYTE R+ ++ Sbjct: 71 GDVIGKYHPHGDSAVYDTIVRMAQDFSLRHMLVDGQGNFGSVDGDNAAAMRYTEIRLAKI 130 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A +L +D++ VDF Y+ + EP+V PSK PNLL NG++GIAVGMAT+IP HN+ E+ Sbjct: 131 AHEMLGDIDKETVDFGPNYDGSEKEPLVLPSKLPNLLVNGSAGIAVGMATNIPPHNLNEV 190 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 +A L ++ NPE SI++L+E I PDFPT GII + + YR GRG +RA+ E Sbjct: 191 VDACLHMLRNPETSIDELMEIIPAPDFPTAGIIY-GINGVKDGYRTGRGKVVMRAKCHFE 249 Query: 260 EVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318 ++ RG I+V E+PYQV K L E++AEL+ K+I + I+DES + ++ R Sbjct: 250 DIDRGQRQAIIVDELPYQVNKKTLQERMAELVHEKKIEGISHIQDESDKSGMRLVIELKR 309 Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378 P++++ +++ + ++ F +NM L G+ P++ L ++ +L HRREV+ RR+ F Sbjct: 310 GEVPEVVLNNLYKQTQLQDTFGMNMVALIDGQ-PRLCNLKDLIVVFLQHRREVVTRRTVF 368 Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV-----------------MVSR- 420 ++ R +L+GL +A NID+ IAIIRN P PV M++R Sbjct: 369 ELRKARDRGHVLEGLAVALANIDDFIAIIRNAPTP-PVAKAELMTRSWDSKLVREMLTRT 427 Query: 421 ----------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELD 452 + L+E Q IL +RL+ L LE+ +I +E Sbjct: 428 RADGGVVNADDYRPEGLEREFGMGQDGLYRLSETQAQEILQMRLQRLTGLEQDKIVAEYK 487 Query: 453 NLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ 512 ++A E + +L ++ I E+ +K+ F + LG RR + E S D +T + Sbjct: 488 EVMAVIEDLLDILAKPERVSTIIGEELTSIKQEFGQHK-LGARR-SIIEYSAQDLST--E 543 Query: 513 AMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRIL 564 +I + V +S+ G+I R+ K A KE D + A+T D IL Sbjct: 544 DLITPTDMVVTLSHTGYIKSQPLSEYRAQKRGGRGKQATATKEDDWIDQLFIANTHDYIL 603 Query: 565 LLSTDGKAYTL-----PAGNLLSGRGH----------GEAIQLLIDLNHNQDIVTA--FV 607 S G+ Y L PAG+ S RG GE I +++ L + A FV Sbjct: 604 CFSNRGRLYWLKVWEVPAGSRGS-RGRPIVNMFPLQDGEKINVVLPLTGDMRSFPADRFV 662 Query: 608 YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV--VKVTGDH-VAVV 664 + T V + + F +N RKG + V+ ++ L+ G H V + Sbjct: 663 FMGTSMGTVKKTALDEF--------SNPRKGG-IIAVNLDDGDYLIGAALTDGKHDVMLF 713 Query: 665 GENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTW--IDSAGRSYNR 721 + K + F + + + R +GVR +DG VI + E T + + Y + Sbjct: 714 SDGGKAVRFDENDVRPLGRAARGVRGMMLEDG--QSVIAMLVAEDETQSVLTATENGYGK 771 Query: 722 SENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753 + + RG G + + R+GK +++ Sbjct: 772 RTSIVEYTRHGRGTKGMIAIQQSERNGKVVAA 803 >gi|258593677|emb|CBE70018.1| DNA gyrase, subunit A, type II topoisomerase [NC10 bacterium 'Dutch sediment'] Length = 841 Score = 387 bits (994), Expect = e-105, Method: Compositional matrix adjust. Identities = 260/757 (34%), Positives = 416/757 (54%), Gaps = 43/757 (5%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 V+ + + Y+ YA+S I RA+PD+RDG KPVHRR+++AM E+GL G ++KK+A Sbjct: 16 VRPTDIHEEMRRSYMDYAMSVIIGRALPDVRDGLKPVHRRVLYAMQELGLSAGRSYKKAA 75 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 RIVGEV+GK HPHGD +VYD++VRL Q F RYPLI GQGNFG++DGD+ AA RYTE R+ Sbjct: 76 RIVGEVLGKYHPHGDTAVYDTIVRLVQDFSMRYPLIDGQGNFGSVDGDAPAAMRYTEVRL 135 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 ++A+ +L+ +D++ VD ++E EP + P+ PNLL NG+SGIAVGMAT+IP HN+ Sbjct: 136 AKIAQEMLRDIDKETVDLAPNFDETLEEPTLLPAALPNLLVNGSSGIAVGMATNIPPHNL 195 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E +A L L+++P+ + ++L+ + GPDFPTG I R I ++Y GRG R+RA+ Sbjct: 196 SETVDALLILLEDPDATPDRLMAVLPGPDFPTGAYIY-GRTGIRDAYLTGRGLIRMRAKA 254 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFP 315 VE+ I+V+E+PYQV K++LIE+IAEL+ ++I + D+RDES E +RIV+ Sbjct: 255 FVEKSRGAREAIIVSELPYQVNKAKLIERIAELVRDRKIEGIADLRDESDREGMRIVIEL 314 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 K P +L +F + M++ F M L G+ P+V+ L L ++ HR+ ++ RR Sbjct: 315 KKEQPAPPIL-NQLFKHTAMQSTFGAIMLALVEGQ-PKVLALKEALSHFIEHRKTIVIRR 372 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAII---RNEDKPKPVMVSRFSLTENQVDAIL 432 + F ++ + R IL+G IA ++D +IA+I R+ D + ++ +F +++ Q AIL Sbjct: 373 TRFDLRKAEERAHILEGYRIALDHLDAVIALIRRSRSADDARAGLMEQFGMSQIQAQAIL 432 Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492 LRL+ L +LE +I+ E +A E+ ++L S I E+ +KE + DL Sbjct: 433 ELRLQRLTQLERQKIQDEYSETIAAIERYRAILASEALVCQIIKEELLAIKETYG---DL 489 Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALH 544 R + M+ E + + I++ G+I RS + ++ + Sbjct: 490 RRTEILEETTE-----IELEDMLADEEMVIPITHGGYIKRSNLNAYRSQRRGGKGMTGMA 544 Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDI 602 KE D ++ A T +LL + GK + L L L G+A+ + L + I Sbjct: 545 TKEEDYVEHLFVATTHSHLLLFTNQGKVHWLKVYGLPQLGHAAKGKALANFLQLGVGEQI 604 Query: 603 VTAFV---YDSTCKLLVVSSKGNAFIVEESEIIA--NTRKGKTF-LKVSSEEKMKLVVKV 656 T ++ LL+ + +G IV+++E+ A N R G + + +++ V Sbjct: 605 TTVIPIRQFEVDRYLLMATRRG---IVKKTELNAYGNPRAGGIIAITLDGGDELIAVRLT 661 Query: 657 TGDHVAVVGENRKLLI-FSIDQIPEMSRG----KGVRLQSYKDGGISDVICFKICEGLTW 711 GD ++G + + I F D++ R KG+ L+ GG V + +G Sbjct: 662 KGDDEILLGTRQGMAIRFKEDEVRSAGRAARGVKGISLE----GGDEVVGAEVVAQGAAV 717 Query: 712 IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG 748 + R Y + + L RGG G + + R+G Sbjct: 718 LTVTERGYGKRTDPEEYRLQSRGGKGIINIRATDRNG 754 >gi|312877898|ref|ZP_07737843.1| DNA topoisomerase (ATP-hydrolyzing) [Caldicellulosiruptor lactoaceticus 6A] gi|311795324|gb|EFR11708.1| DNA topoisomerase (ATP-hydrolyzing) [Caldicellulosiruptor lactoaceticus 6A] Length = 473 Score = 387 bits (994), Expect = e-105, Method: Compositional matrix adjust. Identities = 199/452 (44%), Positives = 307/452 (67%), Gaps = 7/452 (1%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 V ++ ++ Y+ YA+S I RA+PD+RDG KPVHRRI++AM+E+GL ++KSA +V Sbjct: 11 VEIQEEMKRSYIDYAMSVIVSRALPDVRDGLKPVHRRILYAMNEIGLTPDKPYRKSATVV 70 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G V+ K HPHGD +VY+SLVR+AQ F R+PL+ G GNFG++DGD AA RYTEARM+++ Sbjct: 71 GHVLAKYHPHGDAAVYESLVRMAQDFSMRHPLVDGHGNFGSVDGDPPAAMRYTEARMSRI 130 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A +L+ ++++ VDF ++E EP V PS+FPNLL NG+ GIAVGMAT+IP HN+ E+ Sbjct: 131 ALEMLRDIEKETVDFMPNFDESAKEPKVLPSRFPNLLVNGSQGIAVGMATNIPPHNLAEV 190 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 +A + L+DN +++ +++ I GPDFPTGG I+ ++ I ++Y G+G VRA+ +E Sbjct: 191 IDAIVYLLDNENATLDDIMKIIKGPDFPTGGYII-GKKGIKDAYATGKGKIIVRAKTTIE 249 Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFPKNR 318 + +G I+VTE+PY V K+RLIEKIAEL+ K+I + DIRDES E +RIV+ K + Sbjct: 250 QTSKGRQRIIVTELPYMVNKARLIEKIAELVHEKKIDGISDIRDESDKEGLRIVIEIK-K 308 Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378 D +++++ ++ + ++ F + M L + P+V+ L +L ++ H++EV+ RR+ + Sbjct: 309 DADANVVLKQLYKNTQLQDSFGIIMLAL-VDNQPKVLTLMDMLNLYIEHQKEVIVRRTRY 367 Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAILNLR 435 ++ + R IL+GL A +IDEII+IIR+ ++ K ++SRF TE Q AIL++R Sbjct: 368 DLRKAEERAHILEGLKKALDHIDEIISIIRSSKTVNEAKERLISRFQFTEAQAQAILDMR 427 Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467 L+ L LE +I+ EL L+ E ++L S Sbjct: 428 LQRLTGLERQKIEEELAELIRMIEYYKNVLAS 459 >gi|302542024|ref|ZP_07294366.1| DNA gyrase, A subunit [Streptomyces hygroscopicus ATCC 53653] gi|302459642|gb|EFL22735.1| DNA gyrase, A subunit [Streptomyces himastatinicus ATCC 53653] Length = 816 Score = 387 bits (994), Expect = e-105, Method: Compositional matrix adjust. Identities = 212/523 (40%), Positives = 320/523 (61%), Gaps = 15/523 (2%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 EE + + + ++ YL YA S I RA+PD RDG KPVHRRI++ M+EMGL F Sbjct: 15 EERILDIDVVDEMQGSYLEYAYSVIYSRALPDARDGLKPVHRRILYQMNEMGLRPERGFV 74 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYT 132 K AR+VGEV+GKLHPHGD S+YD+LVR+AQPF R P++ G GNFG++ + D AA RYT Sbjct: 75 KCARVVGEVMGKLHPHGDASIYDALVRMAQPFSMRLPMVDGHGNFGSLGNDDPPAAMRYT 134 Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192 E RM L+ + +DED VDF Y+ + EPV P+ +PNLL NGTSGIAVGMAT++P Sbjct: 135 ECRMASATSLMTESIDEDTVDFSPNYDGSEQEPVTLPAAYPNLLVNGTSGIAVGMATNMP 194 Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252 HN+ E+ AA LI +P ++ L+ ++ GPD PTGG IV + ++Y GRG F++ Sbjct: 195 PHNLGEVVSAARHLIRHPNADLDTLMRHVPGPDLPTGGQIV-GLAGVRDAYETGRGSFKI 253 Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD--ESAEDVR 310 RA VE+V +VVTE+P+ V ++I KI +L+ AK++ + D++D + A +R Sbjct: 254 RATVAVEDVTPRRKGLVVTELPFTVGPEKVISKIKDLVGAKKLQGIADVKDLTDRAHGLR 313 Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370 +V+ KN +P+ ++E ++ L+ ME F +N L G+ P + L +L+ +L HR + Sbjct: 314 LVIEIKN-GFNPEAVLEQLYKLTPMEESFGINNVALVDGQ-PLTLGLKELLEVYLDHRFD 371 Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQ 427 V+ RRS FR R+ +++GLL+A L+IDE+I +IR N + K ++ RF L++ Q Sbjct: 372 VVRRRSEFRRTKRRNRLHLVEGLLVALLDIDEVIRLIRSSENSAQAKETLMDRFDLSDVQ 431 Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487 IL+ LR L K + +++SE D L AE E++ +L+S + ++ E+ V + F Sbjct: 432 TQYILDTPLRRLTKFDRIELESERDRLNAEIEELTRILDSDAELRKLVSSELATVGKKFG 491 Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI 530 RRT E + A A + + +P V++S+ G + Sbjct: 492 TP-----RRTVLLESADAPVAAVPLE-VADDPCRVLLSSTGLL 528 >gi|217978381|ref|YP_002362528.1| DNA gyrase, A subunit [Methylocella silvestris BL2] gi|217503757|gb|ACK51166.1| DNA gyrase, A subunit [Methylocella silvestris BL2] Length = 927 Score = 387 bits (994), Expect = e-105, Method: Compositional matrix adjust. Identities = 246/737 (33%), Positives = 396/737 (53%), Gaps = 82/737 (11%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 +++ VS+ + YL YA+S I RA+PD+RDG KPVHRRI+ +M E + K Sbjct: 15 DIRPVSISDEMRRSYLDYAMSVIVSRALPDVRDGLKPVHRRILFSMHEQNHTPDRPYVKC 74 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 ARIVG+V+GK HPHGD ++YD+LVR+AQ F R PLI GQGNFG++DGD AA RYTE+R Sbjct: 75 ARIVGDVMGKYHPHGDSAIYDALVRMAQGFSMRLPLIDGQGNFGSVDGDPPAAMRYTESR 134 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 + + A +L+ +D D VDF+D Y+ ++ EPVV P++FPNLL NG GIAVGMAT+IP HN Sbjct: 135 LARPAMALLEDIDSDTVDFQDNYDGKEREPVVLPARFPNLLVNGAGGIAVGMATNIPPHN 194 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 + E+ +A +ALIDNPE++IE+L+ Y+ GPDFPTGG I+ R I +Y GRG RA+ Sbjct: 195 LGEVIDAVIALIDNPELTIEELMAYVPGPDFPTGGAIL-GRTGIQSAYLTGRGSVLTRAK 253 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315 VE + + ++VTEIPYQ+ KS L+EKIA+L+ KR+ + D+RDES D ++ Sbjct: 254 VEVETLRKEREALIVTEIPYQINKSSLVEKIADLVREKRVEGISDLRDESDRDGMRIVIE 313 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 R ++++ ++ + +++ F NM L+ GR P+++ L L ++ R EV+ RR Sbjct: 314 LKRDAVAEVVLNQLWRYTALQSSFACNMIALNGGR-PEMLTLKDFLTAFVDFREEVVTRR 372 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-------------------NEDKPKPV 416 + + + + GL IA NIDE+I +IR ++ P + Sbjct: 373 TKYLLGKARDAAHLQVGLAIAVANIDEVIRLIRSSADAAAAREALMARSWPAHDMAPLVL 432 Query: 417 MVS--RFSLTEN--------QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466 +++ R L+EN Q AIL LRL+ L L +I L+ L E +L+ Sbjct: 433 LIADPRHILSENGECRLSEAQARAILELRLQRLTALGREEIAEALNKLAVEIADYLEILH 492 Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526 S ++ ++ + E+ VK + RRT + + + +I++E + V +S+ Sbjct: 493 SRERLFSIVKEEMLAVKAAHATP-----RRTIILDSA---TGVDDEDLIQREDMVVTVSH 544 Query: 527 RGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---- 574 G++ R+ + SA+ ++ D + A T +L S+ G+ Y Sbjct: 545 HGYVKRVPLATYRAQRRGGKGRSAMQTRDEDFVARLFVASTHAPVLFFSSAGQVYKEKVW 604 Query: 575 -LPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD------STCKLLVVSSKGNAFIVE 627 LP L + + G+A+ ++ L + I T +T ++ +++G + Sbjct: 605 RLP---LAAPQARGKALVNMLPLEQGERITTIMPLPEEEDAWATLDVMFATTRGTVRRNK 661 Query: 628 ESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGKGV 687 S+ R GK +++ E++ V + GE+ +L+ + ++G+ + Sbjct: 662 LSDFAQVNRAGKIAMRIDEGEEIV--------DVQICGEDADVLLTT-------AKGQCI 706 Query: 688 RLQSYKDGGISDVICFK 704 R ++DV FK Sbjct: 707 RFP------VTDVRVFK 717 >gi|239942664|ref|ZP_04694601.1| DNA gyrase subunit A [Streptomyces roseosporus NRRL 15998] gi|239989123|ref|ZP_04709787.1| DNA gyrase subunit A [Streptomyces roseosporus NRRL 11379] gi|291446125|ref|ZP_06585515.1| DNA gyrase subunit A [Streptomyces roseosporus NRRL 15998] gi|291349072|gb|EFE75976.1| DNA gyrase subunit A [Streptomyces roseosporus NRRL 15998] Length = 880 Score = 387 bits (994), Expect = e-105, Method: Compositional matrix adjust. Identities = 228/627 (36%), Positives = 358/627 (57%), Gaps = 34/627 (5%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 V+ V L ++ YL YA+S I RA+PD+RDG KPVHRR+++AM + G F K A Sbjct: 28 VEPVQLETEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMYDGGYRPEKGFYKCA 87 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+V+G HPHGD S+YD+LVRLAQP+ R PL+ GNFG+ D AAA RYTE +M Sbjct: 88 RVVGDVMGTYHPHGDSSIYDALVRLAQPWSMRMPLVDSNGNFGSPGNDPAAAMRYTECKM 147 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 ++ +++ +DE+ VDF+D Y+ + EP V P++FPNLL NG++GIAVGMAT+IP HN+ Sbjct: 148 MPLSMEMVRDIDEETVDFQDNYDGRNQEPTVLPARFPNLLVNGSAGIAVGMATNIPPHNL 207 Query: 197 QEICEAALALIDNPEISIEK----LLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252 +E+ A +++PE S E+ L+E I GPDFPTG ++V R+ I E+YR GRG + Sbjct: 208 REVAAGAQWYLEHPEASHEELQDALIERIKGPDFPTGALVV-GRKGIEEAYRTGRGSITM 266 Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV--R 310 RA VEE+ +G C+VVTE+PYQ L +KIA+L+ ++ + D+RDE++ R Sbjct: 267 RAVVAVEEI-QGRQCLVVTELPYQTNPDNLAQKIADLVKDGKVGGIADVRDETSSRTGQR 325 Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370 +V+ K R +++ +++ +D++T F NM L G VP+ + +D ++ W+ H+ E Sbjct: 326 LVVVLK-RDAVAKVVLNNLYKHTDLQTNFGANMLALVDG-VPRTLSIDAFIRHWVTHQIE 383 Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQ 427 V+ RR+ FR++ + R IL+GLL A IDE+IA+IR + + ++ + E Q Sbjct: 384 VIVRRTKFRLRKAEERAHILRGLLKALNAIDEVIALIRRSNTVEIAREGLMGLLEIDELQ 443 Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487 +AIL ++LR L LE +I +E D L A+ + + +L S +Q ++ E+ + E F Sbjct: 444 ANAILEMQLRRLAALEHQKITAEHDELQAKINEYNEILASPAKQRGIVSEELAAIVEKFG 503 Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVD 539 RR+ D + + +I +E I V IS G++ RS K Sbjct: 504 DD-----RRSKLVPFE-GDMSI--EDLIAEEDIVVTISRSGYVKRTKTDDYRSQKRGGKG 555 Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEAIQLLIDLN 597 + +E D + + T +L + G+ Y A L +GR G+ + L+ Sbjct: 556 VRGTKLREDDIVDHFFVSTTHHWLLFFTNKGRVYRAKAYELPDAGRDARGQHVANLLAFQ 615 Query: 598 HNQDIVTAFV---YDSTCKLLVVSSKG 621 ++ I Y++ L++ + G Sbjct: 616 PDEKIAQILAIRDYEAVPYLILATKGG 642 >gi|184154482|ref|YP_001842822.1| DNA gyrase subunit A [Lactobacillus fermentum IFO 3956] gi|183225826|dbj|BAG26342.1| DNA gyrase subunit A [Lactobacillus fermentum IFO 3956] Length = 836 Score = 387 bits (994), Expect = e-105, Method: Compositional matrix adjust. Identities = 219/571 (38%), Positives = 347/571 (60%), Gaps = 28/571 (4%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 V+L + +L YA+S I RA+PD+RDG KPV RRI++ M+E+G+ +KKSARIV Sbjct: 13 VNLTSQMRNSFLDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVTPDKPYKKSARIV 72 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+V+GK HPHGD S+Y+ LVR+AQ F RY L+ G GNFG++DGD AAA RYTEA+M+++ Sbjct: 73 GDVMGKFHPHGDSSIYEGLVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAMRYTEAKMSKI 132 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A +L+ +++D VDF+D Y+ + EP V P++FPNLL NG SGIAVGMAT+IP+HN+ E+ Sbjct: 133 AVEMLRDINKDTVDFQDNYDGTEKEPAVLPARFPNLLVNGASGIAVGMATNIPTHNLGEV 192 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 A L++NP++++ +L++ + GPDFPTGG+++ + I ++Y G+G VRA+ +E Sbjct: 193 ISAIHMLMNNPDVTVAELMKALPGPDFPTGGVVM-GKAGIRQAYESGQGSIIVRAKVEIE 251 Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFPKNR 318 E G IVV EIPY V K++LIE+IA L K I + D+ DE+ E +RIV+ + R Sbjct: 252 EQKNGKQRIVVHEIPYMVNKAKLIERIANLAREKEIDGITDVNDETDREGMRIVIDVR-R 310 Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378 ++++ +++ ++ M+T + NM + G P+++ L IL+ +L H+ EV+ RR+ F Sbjct: 311 DASAEVILNNLYKMTLMQTTYNFNMLAIVKG-APKILSLKEILQYYLEHQEEVVRRRTEF 369 Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAILNLR 435 ++ R I+ GL IA +ID II IIR+ + K ++ +SL++ Q AIL+LR Sbjct: 370 DLKKAQNRAHIVAGLRIALDHIDAIINIIRSSETSELAKQRLMDDYSLSDRQAQAILDLR 429 Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495 L L LE +I+ E L+A +L + +++ NQI + E+ EI +K D R Sbjct: 430 LVRLTGLEREKIEDEYQKLVAAIADYKDIL-AHQERINQIIYD--ELMEIQNKFGDERRT 486 Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLK-IA 554 ++S + L + V +++ G+++ L VD + G +K + Sbjct: 487 ELQVGDISNIEDEDLIEEEDI----IVTLTHNGYVKRL---PVDEFKAQNRGGRGVKGMG 539 Query: 555 LH----------AHTTDRILLLSTDGKAYTL 575 +H + T D +L + GK + + Sbjct: 540 VHSDDFIEHLVASSTHDLLLFFTNTGKVFAM 570 >gi|326402875|ref|YP_004282956.1| DNA gyrase subunit A [Acidiphilium multivorum AIU301] gi|325049736|dbj|BAJ80074.1| DNA gyrase subunit A [Acidiphilium multivorum AIU301] Length = 910 Score = 387 bits (994), Expect = e-105, Method: Compositional matrix adjust. Identities = 241/596 (40%), Positives = 340/596 (57%), Gaps = 57/596 (9%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 V++ + YL YA+S I RA+PD RDG KPVHRRI++AM E G ++KSAR+V Sbjct: 17 VTIEQEMRRSYLDYAMSVIVSRALPDARDGLKPVHRRILYAMQEAGNTPDKPYRKSARMV 76 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+V+GK HPHGD ++YD+ VR+AQ F R PLI GQGNFG++DGD AA RYTEAR+ Sbjct: 77 GDVMGKYHPHGDAAIYDAAVRMAQGFSMRVPLIDGQGNFGSVDGDPPAAMRYTEARLADA 136 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A +L +D+D VDF+ TY+E DSEP V P+ FPNLL NG +GIAVGMAT+IP HN EI Sbjct: 137 AMALLADIDKDTVDFQPTYDESDSEPRVLPAAFPNLLVNGGNGIAVGMATNIPPHNPAEI 196 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 +A L LI PE +++ L+ + GPDFPTGGII+ R I ++ GRGG VRAR +E Sbjct: 197 IDATLHLIAQPEATLDDLMRIVPGPDFPTGGIIL-GRSGIRSAFETGRGGIVVRARTSIE 255 Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFPKNR 318 E+ + I+V+E+PYQV K+ L+E+IAEL+ AK I + D+RDES E +R+V+ K R Sbjct: 256 EIRKDRMAIIVSELPYQVNKATLLERIAELVRAKEIEGIADLRDESDREGMRMVIELK-R 314 Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378 P++++ ++ + M+T F +NM L GR P+ + L L ++A R +V+ RRS F Sbjct: 315 DATPEVVLNHLYRFTQMQTGFGINMLALDGGR-PRQLGLRDALDCFIAFREDVILRRSRF 373 Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIR-------------NEDKP----KPVMV--- 418 + R +L GL IA NIDE+IA+IR D P +P++ Sbjct: 374 ELNKARDRAHLLVGLGIAVANIDEVIALIRAAPDAASARIALMARDWPAGDVRPLLELID 433 Query: 419 ---------SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGK 469 LTE Q IL LRL+ L LE +I+SEL + +I LL Sbjct: 434 DHGNQISADGTVRLTEAQARGILELRLQRLTGLEREKIQSELAEV---GRRIGELLEI-- 488 Query: 470 QQWNQIACEIREVK----EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVIS 525 IA R ++ E+ + + R T E S AD+ +++IE + V ++ Sbjct: 489 -----IASRPRRLEVMRDELLAVRARIAAPRLTSIEDSVADQD--DESLIEPGQMVVTMT 541 Query: 526 NRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573 G+I R+ +A + D + + +AHT +L S GKA+ Sbjct: 542 RDGFIKRTPLEAFRAQNRGGRGRAAASMRGDDVITRSFNAHTHQFVLFFSQGGKAF 597 >gi|299782690|gb|ADJ40688.1| DNA gyrase subunit A [Lactobacillus fermentum CECT 5716] Length = 836 Score = 387 bits (994), Expect = e-105, Method: Compositional matrix adjust. Identities = 219/571 (38%), Positives = 347/571 (60%), Gaps = 28/571 (4%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 V+L + +L YA+S I RA+PD+RDG KPV RRI++ M+E+G+ +KKSARIV Sbjct: 13 VNLTSQMRNSFLDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVTPDKPYKKSARIV 72 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+V+GK HPHGD S+Y+ LVR+AQ F RY L+ G GNFG++DGD AAA RYTEA+M+++ Sbjct: 73 GDVMGKFHPHGDSSIYEGLVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAMRYTEAKMSKI 132 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A +L+ +++D VDF+D Y+ + EP V P++FPNLL NG SGIAVGMAT+IP+HN+ E+ Sbjct: 133 AVEMLRDINKDTVDFQDNYDGTEKEPAVLPARFPNLLVNGASGIAVGMATNIPTHNLGEV 192 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 A L++NP++++ +L++ + GPDFPTGG+++ + I ++Y G+G VRA+ +E Sbjct: 193 ISAIHMLMNNPDVTVAELMKALPGPDFPTGGVVM-GKAGIRQAYESGQGSIIVRAKVEIE 251 Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFPKNR 318 E G IVV EIPY V K++LIE+IA L K I + D+ DE+ E +RIV+ + R Sbjct: 252 EQKNGKQRIVVHEIPYMVNKAKLIERIANLAREKEIDGITDVNDETDREGMRIVIDVR-R 310 Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378 ++++ +++ ++ M+T + NM + G P+++ L IL+ +L H+ EV+ RR+ F Sbjct: 311 DASAEVILNNLYKMTLMQTTYNFNMLAIVKG-APKILSLKEILQYYLEHQEEVVRRRTEF 369 Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAILNLR 435 ++ R I+ GL IA +ID II IIR+ + K ++ +SL++ Q AIL+LR Sbjct: 370 DLKKAQNRAHIVAGLRIALDHIDAIINIIRSSETSELAKQRLMDDYSLSDRQAQAILDLR 429 Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495 L L LE +I+ E L+A +L + +++ NQI + E+ EI +K D R Sbjct: 430 LVRLTGLEREKIEDEYQKLVAAIADYKDIL-AHQERINQIIYD--ELMEIQNKFGDERRT 486 Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLK-IA 554 ++S + L + V +++ G+++ L VD + G +K + Sbjct: 487 ELQVGDISNIEDEDLIEEEDI----IVTLTHNGYVKRL---PVDEFKAQNRGGRGVKGMG 539 Query: 555 LH----------AHTTDRILLLSTDGKAYTL 575 +H + T D +L + GK + + Sbjct: 540 VHSDDFIEHLVASSTHDLLLFFTNTGKVFAM 570 >gi|299066868|emb|CBJ38063.1| DNA gyrase, subunit A, type II topoisomerase [Ralstonia solanacearum CMR15] Length = 885 Score = 387 bits (994), Expect = e-105, Method: Compositional matrix adjust. Identities = 262/748 (35%), Positives = 400/748 (53%), Gaps = 94/748 (12%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 VSL + YLAYA+S I RA+PD+RDG KPVHRR+++AM E+ D+ A+KKSARIV Sbjct: 11 VSLEEEMRSSYLAYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNRAYKKSARIV 70 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGD +VYD++VR+AQ F RY L+ GQGNFG++DGD+AAA RYTE R++++ Sbjct: 71 GDVIGKYHPHGDSAVYDTIVRMAQNFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRLSKI 130 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A +L +D++ VDF Y+ ++EP + P++ PNLL NG+SGIAVGMAT+IP HN++E+ Sbjct: 131 AHELLADIDKETVDFEPNYDGSETEPSILPARIPNLLINGSSGIAVGMATNIPPHNLREV 190 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 + L L+ NP+ ++++L+E I PDFPT GII + E YR GRG +RA+ E Sbjct: 191 VDGCLHLLHNPDATVDELIELIPAPDFPTAGIIY-GISGVREGYRTGRGRVVMRAKTHFE 249 Query: 260 EVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318 ++ RG I+V E+PYQV K L+E+IAEL+ KRI + DIRDES + V+ R Sbjct: 250 DIDRGQRQAIIVDELPYQVNKRTLLERIAELVTEKRIEGISDIRDESDKSGMRVVIELKR 309 Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378 P++++ +++ + ++ F +NM L G+ P+++ L +L+ +L HRREV+ RR+ F Sbjct: 310 GEVPEVVLNNLYKNTQLQDTFGMNMVALVDGQ-PRLLNLRQMLECFLLHRREVVTRRTVF 368 Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV-----------------MVSR- 420 ++ R IL+GL +A NIDE IAII+ P P+ M+SR Sbjct: 369 DLRKARERGHILEGLAVALANIDEFIAIIKAAPTP-PIAKQELMGRNWDSGLVREMLSRA 427 Query: 421 ---------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453 + L++ Q IL +RL+ L LE+ +I E Sbjct: 428 ESDTVGGRAAYRPEGLLPVFGMQEGGLYKLSDTQAQEILQMRLQRLTGLEQDKIVQEYRE 487 Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513 ++A+ + +L + +I I V+E+ + G R + E + + T + Sbjct: 488 VMAQIADLLDIL----ARPERITAII--VEELTLIRAEFGDERRSQIEHNATELDT--ED 539 Query: 514 MIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565 +I + + V +S+ G++ R+ K A KE D + A+T D IL Sbjct: 540 LITPQDLVVTLSHSGYMKSQPISEYRAQKRGGRGKQAAATKEDDWIDTLFVANTHDYILC 599 Query: 566 LSTDGKAYTL-----PAGNLLSGRGH----------GEAIQLLIDLNHNQDIVTAFVYDS 610 S G+ Y L P G+ S RG GE I +++ + + FV+ S Sbjct: 600 FSNRGRLYWLKVWEVPQGSRNS-RGRPIVNMFPLSPGEKINVILPVKQFDE--QHFVFMS 656 Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT-GDH-VAVVGENR 668 T K V + F +N RK E + +T G H V + + Sbjct: 657 TSKGTVKKTALTEF--------SNPRKAGIIAVDLDEGDFLIGADITDGQHDVMLFSDAG 708 Query: 669 KLLIFSIDQIPEMSR-GKGVRLQSYKDG 695 K + F + + M R +GVR + ++G Sbjct: 709 KAVRFDENDVRPMGRQARGVRGMNLEEG 736 >gi|227514124|ref|ZP_03944173.1| ATP-hydrolyzing DNA topoisomerase [Lactobacillus fermentum ATCC 14931] gi|227087495|gb|EEI22807.1| ATP-hydrolyzing DNA topoisomerase [Lactobacillus fermentum ATCC 14931] Length = 831 Score = 387 bits (994), Expect = e-105, Method: Compositional matrix adjust. Identities = 215/568 (37%), Positives = 344/568 (60%), Gaps = 22/568 (3%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 V+L + +L YA+S I RA+PD+RDG KPV RRI++ M+E+G+ +KKSARIV Sbjct: 8 VNLTSQMRNSFLDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVTPDKPYKKSARIV 67 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+V+GK HPHGD S+Y+ LVR+AQ F RY L+ G GNFG++DGD AAA RYTEA+M+++ Sbjct: 68 GDVMGKFHPHGDSSIYEGLVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAMRYTEAKMSKI 127 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A +L+ +++D VDF+D Y+ + EP V P++FPNLL NG SGIAVGMAT+IP+HN+ E+ Sbjct: 128 AVEMLRDINKDTVDFQDNYDGTEKEPAVLPARFPNLLVNGASGIAVGMATNIPTHNLGEV 187 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 A L++NP++++ +L++ + GPDFPTGG+++ + I ++Y G+G VRA+ +E Sbjct: 188 ISAIHMLMNNPDVTVAELMKALPGPDFPTGGVVM-GKAGIRQAYESGQGSIIVRAKVEIE 246 Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFPKNR 318 E G IVV EIPY V K++LIE+IA L K I + D+ DE+ E +RIV+ + R Sbjct: 247 EQKNGKQRIVVHEIPYMVNKAKLIERIANLAREKEIDGITDVNDETDREGMRIVIDVR-R 305 Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378 ++++ +++ ++ M+T + NM + G P+++ L IL+ +L H+ EV+ RR+ F Sbjct: 306 DASAEVILNNLYKMTLMQTTYNFNMLAIVKG-APKILSLKEILQYYLEHQEEVVRRRTEF 364 Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAILNLR 435 ++ R I+ GL IA +ID II IIR+ + K ++ +SL++ Q AIL+LR Sbjct: 365 DLKKAQNRAHIVAGLRIALDHIDAIINIIRSSETSELAKQRLMDDYSLSDRQAQAILDLR 424 Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495 L L LE +I+ E L+A +L + +++ NQI + E+ EI +K D R Sbjct: 425 LVRLTGLEREKIEDEYQKLVAAIADYKDIL-AHQERINQIIYD--ELMEIQNKFGDERRT 481 Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD--------LSALHFKE 547 ++S + L + V +++ G+++ L + + Sbjct: 482 ELQVGDISNIEDEDLIEEEDI----IVTLTHNGYVKRLPVDEFKAQNRGGRGVKGMGVHS 537 Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTL 575 D ++ + + T D +L + GK + + Sbjct: 538 DDFIEHLVASSTHDLLLFFTNTGKVFAM 565 >gi|91784819|ref|YP_560025.1| DNA gyrase subunit A [Burkholderia xenovorans LB400] gi|91688773|gb|ABE31973.1| DNA gyrase subunit A [Burkholderia xenovorans LB400] Length = 882 Score = 387 bits (993), Expect = e-105, Method: Compositional matrix adjust. Identities = 228/612 (37%), Positives = 349/612 (57%), Gaps = 67/612 (10%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 +SL + YL YA+S I RA+PD+RDG KPVHRR+++AM E+ D+ A+KKSARIV Sbjct: 11 ISLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNRAYKKSARIV 70 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGD +VYD++VR+AQ F RY L+ GQGNFG++DGD+AAA RYTE RM ++ Sbjct: 71 GDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAKI 130 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 +L +D++ VDF Y+ ++EP + P++ PNLL NG+SGIAVGMAT+IP HN+ E+ Sbjct: 131 GHELLADIDKETVDFTPNYDGSENEPAILPARIPNLLINGSSGIAVGMATNIPPHNLNEV 190 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 +A L+ NPE +I++L+E + PDFPT GII + + YR GRG +RA E Sbjct: 191 VDACQHLLKNPEATIDELIEIVPAPDFPTAGIIY-GVAGVRDGYRTGRGRVVMRALTHFE 249 Query: 260 EVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318 E+ RG I+V E+PYQV K L+E+IAEL+ K++ + DIRDES + V+ R Sbjct: 250 EIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKR 309 Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378 P++++ +++ + ++ F +NM L G+ P+++ L +L +L+HRREVL RR+ + Sbjct: 310 GEVPEVVLNNLYKATQLQDTFGMNMVALVDGQ-PKLLNLKEMLSCFLSHRREVLTRRTVY 368 Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV-----------------MVSR- 420 ++ R +L+GL +A NIDE IAII+ P P+ M+SR Sbjct: 369 ELRKARERGHVLEGLAVALANIDEFIAIIKAAPTP-PIAKQELMARAWDSSLVREMLSRA 427 Query: 421 -----------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451 + L++ Q IL +RL+ L LE+ +I E Sbjct: 428 ETENATAGGREAYRPDGLNPSFGMQSDGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEY 487 Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511 ++A+ + +L + +I I V+E+ S + G R + E++ + T Sbjct: 488 REVMAQIADLLDIL----ARPERITAII--VEELTSIKAEFGDARRSKIELNATELNT-- 539 Query: 512 QAMIEKEPITVVISNRGWIRS--LKSHSVD------LSALHFKEGDSLKIALHAHTTDRI 563 + +I + + V +S+ G+++S L +S A KE D + A+T D I Sbjct: 540 EDLITPQEMVVTMSHAGYVKSQPLSEYSAQKRGGRGKQATAMKEDDWIDTLFIANTHDHI 599 Query: 564 LLLSTDGKAYTL 575 L S G+ Y++ Sbjct: 600 LCFSNRGRVYSV 611 >gi|86606084|ref|YP_474847.1| DNA gyrase subunit A [Synechococcus sp. JA-3-3Ab] gi|86554626|gb|ABC99584.1| DNA gyrase, A subunit [Synechococcus sp. JA-3-3Ab] Length = 846 Score = 387 bits (993), Expect = e-105, Method: Compositional matrix adjust. Identities = 221/608 (36%), Positives = 352/608 (57%), Gaps = 36/608 (5%) Query: 19 AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78 + L+ + + YL YA+S I RA+PD RDG KPVHRRI++AM E+GL F+K AR+ Sbjct: 7 STDLQREMAQSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMHELGLTADRPFRKCARV 66 Query: 79 VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138 VG+VIGK HPHGDQ+VY++LVR+AQ F R L+ G GNFG+ID D AA RYTE R+T Sbjct: 67 VGDVIGKYHPHGDQAVYEALVRMAQDFSMRERLVDGHGNFGSIDNDPPAAMRYTECRLTA 126 Query: 139 VA-ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197 A E +LQ +D + VDF D Y+ EP+V P++ P LL NG+SGIAVGMAT+IP HN+ Sbjct: 127 FAQEALLQDIDANTVDFIDNYDGSQQEPLVLPARIPQLLLNGSSGIAVGMATNIPPHNLG 186 Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257 E+ + +ALI NP ++ +L+++I PDFPTGG+I+ +E I E+Y GRG +R Sbjct: 187 ELVDGLIALIHNPNLTSLELMQWIPAPDFPTGGLIM-GQEGIREAYTTGRGSITLRGVAT 245 Query: 258 VEEV---GRGSW-CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313 VE + GR + I++TE+PYQ K+ +IEKIAEL+ K++ + DIRDES + V+ Sbjct: 246 VETIEQRGRPTREAIIITELPYQTNKAAMIEKIAELVNEKKLEGIADIRDESDREGMRVV 305 Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373 R P +++ +++ + +++ F +NM + G P+ + L L+ +L R EV+ Sbjct: 306 IELKRDAQPQVVLNNLYKQTPLQSNFGVNMLAILNGE-PRTLTLRDALQAFLDFRAEVIE 364 Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDA 430 RR+ + +Q + R +L+G L+A +D +IA+IR + + + + L+E Q D Sbjct: 365 RRTRYELQKAEERDHLLQGYLLALGQLDRVIALIRGAADATTARAELQATLGLSEAQADG 424 Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490 IL ++LR L LE +I++E ++L+ + + +L ++ I+ E++++K F+ Sbjct: 425 ILQMQLRRLTALEAEKIQAEHEDLVRQIADLRDILARRERVMQIISEELQQLKSRFASP- 483 Query: 491 DLGRRRTTF----CEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL------ 540 RR+ CE+ AD +IE + ++ +G+I+ + + Sbjct: 484 ----RRSRLCLEDCELKVAD-------LIENRETVIFLTEQGYIKRMDLEEFQVQGRATR 532 Query: 541 --SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDL 596 + K+ D+++ + D IL + G YTLPA + G G AI L+ + Sbjct: 533 GKAGARIKDDDAIEQFFACRSHDTILFFTDRGMVYTLPAYEIPQGSRTARGSAIVQLLPI 592 Query: 597 NHNQDIVT 604 + + + Sbjct: 593 TREERVTS 600 >gi|148260183|ref|YP_001234310.1| DNA gyrase subunit A [Acidiphilium cryptum JF-5] gi|146401864|gb|ABQ30391.1| DNA gyrase subunit A [Acidiphilium cryptum JF-5] Length = 910 Score = 387 bits (993), Expect = e-105, Method: Compositional matrix adjust. Identities = 241/596 (40%), Positives = 340/596 (57%), Gaps = 57/596 (9%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 V++ + YL YA+S I RA+PD RDG KPVHRRI++AM E G ++KSAR+V Sbjct: 17 VTIEQEMRRSYLDYAMSVIVSRALPDARDGLKPVHRRILYAMQEAGNTPDKPYRKSARMV 76 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+V+GK HPHGD ++YD+ VR+AQ F R PLI GQGNFG++DGD AA RYTEAR+ Sbjct: 77 GDVMGKYHPHGDAAIYDAAVRMAQGFSMRVPLIDGQGNFGSVDGDPPAAMRYTEARLADA 136 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A +L +D+D VDF+ TY+E DSEP V P+ FPNLL NG +GIAVGMAT+IP HN EI Sbjct: 137 AMALLADIDKDTVDFQPTYDESDSEPRVLPAAFPNLLVNGGNGIAVGMATNIPPHNPAEI 196 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 +A L LI PE +++ L+ + GPDFPTGGII+ R I ++ GRGG VRAR +E Sbjct: 197 IDATLHLIAQPEATLDDLMRIVPGPDFPTGGIIL-GRSGIRSAFETGRGGIVVRARTSIE 255 Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFPKNR 318 E+ + I+V+E+PYQV K+ L+E+IAEL+ AK I + D+RDES E +R+V+ K R Sbjct: 256 EIRKDRMAIIVSELPYQVNKATLLERIAELVRAKEIEGIADLRDESDREGMRMVIELK-R 314 Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378 P++++ ++ + M+T F +NM L GR P+ + L L ++A R +V+ RRS F Sbjct: 315 DATPEVVLNHLYRFTQMQTGFGINMLALDGGR-PRQLGLRDALDCFIAFREDVILRRSRF 373 Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIR-------------NEDKP----KPVMV--- 418 + R +L GL IA NIDE+IA+IR D P +P++ Sbjct: 374 ELNKARDRAHLLVGLGIAVANIDEVIALIRAAPDAASARIALMARDWPAGDVRPLLELID 433 Query: 419 ---------SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGK 469 LTE Q IL LRL+ L LE +I+SEL + +I LL Sbjct: 434 DHGNQISADGTVRLTEAQARGILELRLQRLTGLEREKIQSELAEV---GRRIGELLEI-- 488 Query: 470 QQWNQIACEIREVK----EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVIS 525 IA R ++ E+ + + R T E S AD+ +++IE + V ++ Sbjct: 489 -----IASRPRRLEVMRDELLAVRARIAAPRLTSIEDSVADQD--DESLIEPGQMVVTMT 541 Query: 526 NRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573 G+I R+ +A + D + + +AHT +L S GKA+ Sbjct: 542 RDGFIKRTPLEAFRAQNRGGRGRAAASMRGDDVITRSFNAHTHQFVLFFSQGGKAF 597 >gi|154151175|ref|YP_001404793.1| DNA gyrase, A subunit [Candidatus Methanoregula boonei 6A8] gi|153999727|gb|ABS56150.1| DNA gyrase, A subunit [Methanoregula boonei 6A8] Length = 829 Score = 387 bits (993), Expect = e-105, Method: Compositional matrix adjust. Identities = 236/658 (35%), Positives = 371/658 (56%), Gaps = 29/658 (4%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 +S+ ++ ++ YA+S I +RAIPD+RDG KPVHRR ++AM +MG KKSAR+V Sbjct: 19 ISIEQEMKTSFINYAMSVIIQRAIPDVRDGLKPVHRRSLYAMWDMGNTSDKPTKKSARVV 78 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+V+GK HPHGD S+YD++V++AQPF R+PL+ GQGNFG++DGD+AAA RYTE R+ Sbjct: 79 GDVMGKYHPHGDASIYDTIVKMAQPFSYRHPLVQGQGNFGSVDGDAAAASRYTEVRLFPY 138 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 AE +L+ +D++ V+F Y+E EP V PSK PNLL NGT GIAVGMAT +P HN++E+ Sbjct: 139 AEALLEDLDKETVEFVPNYDESLKEPTVLPSKIPNLLVNGTDGIAVGMATKMPPHNLREV 198 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 C A +D P + +E+LL+ + GPDFPTGGI++ + + Y G+G VR +E Sbjct: 199 CAAVNRFLDEPSVPVEELLKIMPGPDFPTGGILM-GVDGVKNIYATGQGRIVVRGVAEIE 257 Query: 260 EVGRGSWC--IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317 E G+ I+VTE+PYQV K++ I IA+++ K++ + DIRDES +D V+F Sbjct: 258 ESEGGNRGDRIIVTELPYQVNKAQWITAIADMVKDKKLDGISDIRDESDKDGIRVVFELR 317 Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377 + +++ +++ + +E+ F N+ + P+++ L +L ++ HR EV+ RRS Sbjct: 318 KGTISAVILNNLYRFTALESGFSA-YNLAIVDGTPKLLNLPALLGNFVHHRIEVIRRRSE 376 Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAILNL 434 F ++ RV IL GLL A +ID+IIA IR D + ++S F L E Q +AIL + Sbjct: 377 FDLKKCQERVHILNGLLTALASIDKIIAAIRGSDTVDNARIALISGFGLDELQANAILQM 436 Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494 +LR L LE+ +I E L AE K++++L S + ++I RE EI K G Sbjct: 437 QLRRLAALEQQKIVDEKSTLEAEILKLETILASEENIKDEIR---RETSEIALK---FGD 490 Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DLSALHFK 546 R T + +D +T + +IE + + V I+ +I+ + + ++ + K Sbjct: 491 ARRTEITLDASDLST--EDLIEDKTVLVSITTANYIKRMDLDTYRKQRRGGHGITGMTTK 548 Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606 E D + A D +L + G+ Y L + + ++ LN ++VT Sbjct: 549 EDDVVSSVFAAGMKDYLLCFTNIGRVYWLKVYQIPESSRIAKGKPIVNLLNLKDEVVTTV 608 Query: 607 V----YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH 660 + + LL + G + + E G +++ E KLV +T D+ Sbjct: 609 IPIREFRKDRYLLFATQLGQVIKIPQDEFSFPRSTGTNAIRL--RENDKLVDVITTDN 664 >gi|254393573|ref|ZP_05008706.1| DNA gyrase subunit A [Streptomyces clavuligerus ATCC 27064] gi|294813746|ref|ZP_06772389.1| DNA gyrase subunit A [Streptomyces clavuligerus ATCC 27064] gi|326442167|ref|ZP_08216901.1| DNA gyrase subunit A [Streptomyces clavuligerus ATCC 27064] gi|197707193|gb|EDY53005.1| DNA gyrase subunit A [Streptomyces clavuligerus ATCC 27064] gi|294326345|gb|EFG07988.1| DNA gyrase subunit A [Streptomyces clavuligerus ATCC 27064] Length = 873 Score = 387 bits (993), Expect = e-105, Method: Compositional matrix adjust. Identities = 225/582 (38%), Positives = 340/582 (58%), Gaps = 34/582 (5%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 ++ V L ++ YL YA+S I RA+PD+RDG KPVHRR+++AM + G F K A Sbjct: 20 IEPVGLETEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMYDGGYRPEKGFYKCA 79 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+V+G HPHGD S+YD+LVRLAQP+ R PL+ GNFG+ D AAA RYTE +M Sbjct: 80 RVVGDVMGTYHPHGDTSIYDALVRLAQPWSMRMPLVDSNGNFGSPGNDPAAAMRYTECKM 139 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 ++ +L+ +DED VDF+D Y+ + EP V P++ PNLL NG++GIAVGMAT+IP HN+ Sbjct: 140 APLSMEMLRDIDEDTVDFQDNYDGRNQEPTVLPARIPNLLVNGSAGIAVGMATNIPPHNL 199 Query: 197 QEICEAALALIDNPEISIEKLLEYII----GPDFPTGGIIVESRESIVESYRLGRGGFRV 252 +E+ A +++PE S E+LL+ +I GPDFPTG ++V R+ I E+YR GRG + Sbjct: 200 REVAAGAQWALEHPESSHEELLDALIERIKGPDFPTGALVV-GRKGIEEAYRTGRGSITM 258 Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV--R 310 RA VEE+ + C+VVTE+PYQV L +KIA+L+ RI + D+RDE++ R Sbjct: 259 RAVVEVEEI-QNRQCLVVTELPYQVNPDNLAQKIADLVKDGRIGGIADVRDETSSRTGQR 317 Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370 +V+ K R +++ +++ +D++T F NM L G VP+ + LD ++ W+ H+ E Sbjct: 318 LVIVLK-RDAVAKVVLNNLYKHTDLQTNFGANMLALVDG-VPRTLSLDAFIRHWVTHQIE 375 Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQ 427 V+ RR+ FR++ + R IL+GLL A +IDE+IA+IR D + ++ S+ E Q Sbjct: 376 VVVRRTRFRLRKAEERAHILRGLLKALDSIDEVIALIRRSDTVEIARAGLMDLLSIDEVQ 435 Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487 +AIL ++LR L LE +I E L + + +++L S ++Q ++ E+ + E + Sbjct: 436 ANAILEMQLRRLAALERQKILQEHAELQEKINEYNAILASPEKQRRIVSEELAVIVEKYG 495 Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVD 539 RR+ D + +I +E I V IS G++ RS K Sbjct: 496 DD-----RRSQLVPF---DGDMSIEDLIAEEDIVVTISRGGYVKRTRTDDYRSQKRGGKG 547 Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLP 576 + KE D + + T +L + G KAY LP Sbjct: 548 VRGTKLKEDDIVDHFFVSTTHHWLLFFTNKGRVYRAKAYELP 589 >gi|170289511|ref|YP_001739749.1| DNA gyrase, A subunit [Thermotoga sp. RQ2] gi|170177014|gb|ACB10066.1| DNA gyrase, A subunit [Thermotoga sp. RQ2] Length = 804 Score = 387 bits (993), Expect = e-105, Method: Compositional matrix adjust. Identities = 230/610 (37%), Positives = 362/610 (59%), Gaps = 27/610 (4%) Query: 26 LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85 L E YL Y++S I RAIPD+RDG KPV RRI++ M E+GL + KKSARIVGEV+GK Sbjct: 14 LVESYLLYSMSVIVGRAIPDVRDGLKPVQRRILYGMYELGLKHNSPTKKSARIVGEVMGK 73 Query: 86 LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145 HPHGD VYD+LVR+AQPF RYPLI GQGNFG+ID D AA RYTEAR+T++AE +L+ Sbjct: 74 YHPHGDAPVYDALVRMAQPFTMRYPLIEGQGNFGSIDRDPPAAMRYTEARLTKLAEEMLE 133 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 ++++ V+ D ++ EP V PSK PNL+ NG SGIAVGMAT+IP HN+ E +A + Sbjct: 134 DIEKNTVNMVDNFDGTLKEPEVLPSKVPNLIINGASGIAVGMATNIPPHNLSETVDALIY 193 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265 LID+PE ++E+L+++I GPDFPTG ++V + E + + Y GRG VR + VE+ G+ Sbjct: 194 LIDHPEATVEELMQFIKGPDFPTGAVVVNASE-LKKVYEEGRGRIIVRGKVHVED-GKRV 251 Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE-DVRIVL-FPKNRSLDPD 323 IV+TEIPY V K+ LIE+IA++ + +IRDES + +RIV+ PK+ S + Sbjct: 252 KRIVITEIPYGVSKAGLIEQIAKIAKDDESLPIRNIRDESDKRGMRIVIEIPKDTS--EE 309 Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383 +++ +++ + ++ F + M V+ + P++M L G+++ +L HR EV+ RR+ + + Sbjct: 310 VIINNLYKRTALQDYFNVQMLVIDKHKRPRLMNLKGLMEAFLEHRFEVIRRRARYEYEQY 369 Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAILNLRLRSLR 440 RR +++GLL A I ++ I+RN + K ++ +TE Q AIL++RL L Sbjct: 370 TRRAHVVEGLLKAARAIGVVVDIVRNSKDVESAKQSLMETLEITEEQAKAILDMRLSRLT 429 Query: 441 KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500 LE +++E +L+ + ++ +L + ++ EI + + ++ K RRT Sbjct: 430 SLEIENLQNEYSDLVRKISEVKEIL-----EKDEKVKEIMKEEFLYLKQQYGDPRRT--- 481 Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLK 552 E++ ++ +I +E + + +S+ G++ RS K ++ E D ++ Sbjct: 482 EITDQSIQYNEEELIVEEDVVITLSHNGYLKSTPLNSYRSQKRGGKGITVSKLTEDDEVE 541 Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNL-LSGRG-HGEAIQLLIDLNHNQDIVTAFVYDS 610 + A T L ++ G+AY L L +GR G I ++L + IV + Sbjct: 542 FVVVAKNTASTLFITNLGRAYVLKNYQLETTGRNTRGRHITAFLNLEDTEKIVALASLNG 601 Query: 611 TCKLLVVSSK 620 LV+ +K Sbjct: 602 DGNDLVIVTK 611 >gi|281413087|ref|YP_003347166.1| DNA gyrase, A subunit [Thermotoga naphthophila RKU-10] gi|281374190|gb|ADA67752.1| DNA gyrase, A subunit [Thermotoga naphthophila RKU-10] Length = 804 Score = 387 bits (993), Expect = e-105, Method: Compositional matrix adjust. Identities = 230/610 (37%), Positives = 362/610 (59%), Gaps = 27/610 (4%) Query: 26 LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85 L E YL Y++S I RAIPD+RDG KPV RRI++ M E+GL + KKSARIVGEV+GK Sbjct: 14 LVESYLLYSMSVIVGRAIPDVRDGLKPVQRRILYGMYELGLKHNSPTKKSARIVGEVMGK 73 Query: 86 LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145 HPHGD VYD+LVR+AQPF RYPLI GQGNFG+ID D AA RYTEAR+T++AE +L+ Sbjct: 74 YHPHGDAPVYDALVRMAQPFTMRYPLIEGQGNFGSIDRDPPAAMRYTEARLTKLAEEMLE 133 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 ++++ V+ D ++ EP V PSK PNL+ NG SGIAVGMAT+IP HN+ E +A + Sbjct: 134 DIEKNTVNMVDNFDGTLKEPEVLPSKVPNLIINGASGIAVGMATNIPPHNLSETVDALIY 193 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265 LID+PE ++E+L+++I GPDFPTG ++V + E + + Y GRG VR + VE+ G+ Sbjct: 194 LIDHPEATVEELMQFIKGPDFPTGAVVVNASE-LKKVYEEGRGRIIVRGKVHVED-GKRV 251 Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE-DVRIVL-FPKNRSLDPD 323 IV+TEIPY V K+ LIE+IA++ + +IRDES + +RIV+ PK+ S + Sbjct: 252 KRIVITEIPYGVSKAGLIEQIAKIAKDDESLPIRNIRDESDKRGMRIVIEIPKDTS--EE 309 Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383 +++ +++ + ++ F + M V+ + P++M L G+++ +L HR EV+ RR+ + + Sbjct: 310 VIINNLYKRTALQDYFNVQMLVIDKHKRPRLMNLKGLMEAFLEHRFEVIRRRARYEYEQY 369 Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAILNLRLRSLR 440 RR +++GLL A I ++ I+RN + K ++ +TE Q AIL++RL L Sbjct: 370 TRRAHVVEGLLKAARAIGVVVDIVRNSKDVESAKQSLMETLEITEEQAKAILDMRLSRLT 429 Query: 441 KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500 LE +++E +L+ + ++ +L + ++ EI + + ++ K RRT Sbjct: 430 SLEIENLQNEYSDLVRKISEVKEIL-----EKDEKVKEIMKEEFLYLKQQYGDPRRT--- 481 Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLK 552 E++ ++ +I +E + + +S+ G++ RS K ++ E D ++ Sbjct: 482 EITDQSIQYNEEELIVEEDVVITLSHNGYLKSTPLNSYRSQKRGGKGITVSKLTEDDEVE 541 Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNL-LSGRG-HGEAIQLLIDLNHNQDIVTAFVYDS 610 + A T L ++ G+AY L L +GR G I ++L + IV + Sbjct: 542 FVVVAKNTASTLFITNLGRAYVLKNYQLETTGRNTRGRHITAFLNLEDTEKIVALASLNG 601 Query: 611 TCKLLVVSSK 620 LV+ +K Sbjct: 602 DGNDLVIVTK 611 >gi|210614353|ref|ZP_03290172.1| hypothetical protein CLONEX_02386 [Clostridium nexile DSM 1787] gi|210150697|gb|EEA81706.1| hypothetical protein CLONEX_02386 [Clostridium nexile DSM 1787] Length = 814 Score = 387 bits (993), Expect = e-105, Method: Compositional matrix adjust. Identities = 236/651 (36%), Positives = 371/651 (56%), Gaps = 46/651 (7%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 + V + L+ +EE Y+ YA+S I RA+PD+RDG KPV RRI+++M E+ +K Sbjct: 7 DKVHDIDLKKTMEESYIDYAMSVIASRALPDVRDGLKPVQRRILYSMIELNNGPDKPHRK 66 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 ARIVG+ +GK HPHGD S+Y +LV +AQ + RYPL+ G GNFG++DGD AAA RYTEA Sbjct: 67 CARIVGDTMGKYHPHGDSSIYGALVNMAQEWSTRYPLVDGHGNFGSVDGDGAAAMRYTEA 126 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 R+++++ + ++++ VDF ++E + EP V P++FPNLL NGTSGIAVGMAT+IP H Sbjct: 127 RLSKISMELTADINKNTVDFTPNFDETEKEPSVLPARFPNLLVNGTSGIAVGMATNIPPH 186 Query: 195 NVQEICEAALALID-----NPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249 N+ E+ A + +ID N E +IE +L+ I GPDFPTG +I+ +R I E+YR GRG Sbjct: 187 NLHEVISAVVKIIDDQIDENGETTIEDILQIIKGPDFPTGAMILGTR-GIEEAYRTGRGK 245 Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309 RVRA +E + G IVVTE+PY V K+RLIEKIAEL+ K+I + D+ D+S + Sbjct: 246 IRVRAVTDIEPMQNGKNRIVVTELPYMVNKARLIEKIAELVRDKKIDGITDLSDQSNREG 305 Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369 + R ++ ++++ ++ + ++ F + M L + P+VM + +L +L H+ Sbjct: 306 MRICIELRRDVNANVILNQLYKHTQLQDTFGVIMLAL-VNNEPKVMNILDMLNYYLKHQE 364 Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTEN 426 EV+ RR+ + + + R IL+GLLIA NIDE+I IIR N K ++ F LTE Sbjct: 365 EVVTRRTQYELNKAEERAHILQGLLIALDNIDEVIRIIRGSKNTQIAKEGLIEAFELTEV 424 Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486 Q AI+++RLR+L LE ++++E L+ ++ ++L K I EI + + Sbjct: 425 QAQAIVDMRLRALTGLEREKLETEYAELMKRIGELKAILADRKLLLGVIKEEILIIDGKY 484 Query: 487 SKSTDLGRRRTTF----CEVSRADKATLQQAMIEKEPITVVISNRGWIR-----SLKSHS 537 S RRT+ ++S D +I ++ + + ++ G+I+ + KS + Sbjct: 485 SDE-----RRTSIGFDEFDISMED-------LIPRQDVVITMTKLGYIKRMTVDTFKSQN 532 Query: 538 ---VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQL 592 + + + D ++ T I+ + G+ Y L + S G AI Sbjct: 533 RGGKGIKGMQTIDEDYVEELFMTSTHHYIMFFTNTGRVYRLKGYEIPEASRTARGTAIIN 592 Query: 593 LIDLNHNQDIVTAFV----YDSTCKLLVVSSKGNAFIVEESEII--ANTRK 637 L+ L ++ I TA + Y L + + KG +V+++ I AN RK Sbjct: 593 LLQLMPDEKI-TAMIPIDEYKEGQYLFMATKKG---LVKKTPITDYANVRK 639 >gi|319902117|ref|YP_004161845.1| DNA gyrase subunit A [Bacteroides helcogenes P 36-108] gi|319417148|gb|ADV44259.1| DNA gyrase subunit A [Bacteroides helcogenes P 36-108] Length = 842 Score = 387 bits (993), Expect = e-105, Method: Compositional matrix adjust. Identities = 254/777 (32%), Positives = 418/777 (53%), Gaps = 57/777 (7%) Query: 12 LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71 L ++ + +++ ++ Y+ Y++S I RA+PD+RDGFKPVHRRI+ M +G Sbjct: 2 LEQDRIIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILFGMMGLGNTSDKP 61 Query: 72 FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131 +KKSAR+VGEV+GK HPHGD SVY +LVR+AQP+ RY L+ GQGN+G++DGDSAAA RY Sbjct: 62 YKKSARVVGEVLGKYHPHGDSSVYGALVRMAQPWAMRYMLVDGQGNYGSVDGDSAAAMRY 121 Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191 TE R+ ++ E ++Q +D++ VD ++ +++ EP V P++ PNLL NG SGIAVGMAT++ Sbjct: 122 TECRLQKIGEDMMQDLDKETVDMQNNFDDSLQEPTVMPTRIPNLLVNGASGIAVGMATNM 181 Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251 P+HN+ E+ +A ++ IDN EI IE+L+ Y+ PDFPTGG I + E+Y GRG Sbjct: 182 PTHNLSEVIDACISYIDNNEIDIEELMSYVKAPDFPTGGYIY-GMSGVREAYLTGRGRVI 240 Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVR 310 +RA+ + E G IVVTEIPY V K+ LI+ IA+L K+I + + DES E +R Sbjct: 241 MRAKAEI-ETGSTHDKIVVTEIPYGVNKAELIKSIADLANEKKIEGIANANDESDREGMR 299 Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370 IV+ K R + +++ ++ ++ ++T F +N L GR P+++ L ++K ++ HR + Sbjct: 300 IVIDVK-RDANASVVLNKLYKMTLLQTSFGVNNVALVHGR-PRLLNLKDLIKYFVEHRHD 357 Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQ 427 V+ RR+ + ++ R IL+GL+IA NIDE+I IIR P ++ RF LTE Q Sbjct: 358 VVIRRTQYDLRKAKERAHILEGLIIASDNIDEVIKIIRAAKTPNDAITGLIERFQLTEIQ 417 Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487 AI+ +RLR L L + Q+ +E + + + ++ +L + + I E+ E+K+ + Sbjct: 418 SRAIVEMRLRQLTGLMQDQLHAEYEEIQKQIAHLEEILVNDELCRKVIKDELIEIKDKYG 477 Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVD 539 RR+ E+ + + + + + + IS+ G+I R+ V Sbjct: 478 DE-----RRS---EIVYSSEEFNPEDFYADDEMIITISHMGYIKRTPLSEFRAQNRGGVG 529 Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLN 597 ++ D ++ A + ++ + GK Y L + G G AIQ L++++ Sbjct: 530 SKGTETRDEDFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTKNSKGRAIQNLLNID 589 Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG---KTFLKVSSEEKMKLVV 654 + D V A+ L V + + + ++ T+ G KT L+ S + V Sbjct: 590 SD-DAVNAY--------LRVKNLNDQDFINSHYVVFCTKNGIVKKTLLEQYSRPRQNGVN 640 Query: 655 KVT--------------GDH-VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGIS 698 +T GD+ + + N + + F + M R GVR + + G Sbjct: 641 AITIREDDRVIEVRMTNGDNEIIIANRNGRAIRFHESAVRVMGRTATGVRGMTLDEDGQD 700 Query: 699 DV---ICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752 +V IC K + T + + + Y + + RGG G ++GK ++ Sbjct: 701 EVVGMICIKDPDTETIMVVSEQGYGKRSDIEDYRKTNRGGKGVKTMNITDKTGKLVT 757 >gi|228473049|ref|ZP_04057806.1| DNA gyrase, A subunit [Capnocytophaga gingivalis ATCC 33624] gi|228275631|gb|EEK14408.1| DNA gyrase, A subunit [Capnocytophaga gingivalis ATCC 33624] Length = 836 Score = 387 bits (993), Expect = e-105, Method: Compositional matrix adjust. Identities = 225/629 (35%), Positives = 367/629 (58%), Gaps = 34/629 (5%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 E + +++ ++ Y+ Y++S I RA+PD+RDG KPVHRR++ M E+G+ A KK Sbjct: 5 EKLIPINIEDQMKTAYIDYSMSVIVSRALPDVRDGLKPVHRRVLFGMHELGVRSNTAHKK 64 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 SARIVGEV+GK HPHGD SVYD++VR+AQ + RY L+ GQGNFG+IDGDS AA RYTEA Sbjct: 65 SARIVGEVLGKYHPHGDSSVYDTMVRMAQWWNMRYMLVDGQGNFGSIDGDSPAAMRYTEA 124 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 RM ++AE +L +D++ VD +++ EP V P++ PNLL NG+SGIAVGMAT++P H Sbjct: 125 RMRKMAEDMLIDIDKETVDHSLNFDDTLLEPTVLPTRIPNLLVNGSSGIAVGMATNMPPH 184 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 N+ E+ + +A + N +I+I++L+EYI PDFPTGGII + + E+++ GRG +RA Sbjct: 185 NLAEVVDGIIAYLGNQDITIDELMEYIKAPDFPTGGIIY-GYDGVREAFKTGRGRVVIRA 243 Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314 + EEV G CIVVTE+PYQV + E+ + L+ ++ L DI D++ + +++ Sbjct: 244 KAHFEEVN-GRDCIVVTEVPYQVNPETMREQTSNLVKEGKLEGLADIVDQTGKGGMRIVY 302 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 + P++++ ++F + +++ F +N L GR PQ + L ++ ++ HR +V++R Sbjct: 303 ELKKDAIPNVVLNNLFKHTALQSSFSVNNIALVNGR-PQQLNLKDLIYHFVEHRHDVVYR 361 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEI---IAIIRNEDKPKPVMVSRFSLTENQVDAI 431 R+ + ++ R+ IL+G + D + I IIR DKPK +++ F LTE Q +AI Sbjct: 362 RTEYELKKAKERIHILEGFMKVMATEDTMGKAIEIIRFHDKPKEDLMTEFELTEIQAEAI 421 Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491 L L+LR + KL Q K E + LLA+ ++ +L +++ I E+ E+K + Sbjct: 422 LALQLRRINKLLILQTKEEYEQLLAQIIDLEDILARKERRTEIIKEELLEIKSKY----- 476 Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR-----SLKSHS---VDLSAL 543 G R + E + D + + +I + + + ISN G+I+ K+ + V A Sbjct: 477 -GDERRSVIEYAGGDISI--EDIIPDDQVVITISNAGYIKRTSVNEYKTQARGGVGQKAS 533 Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQD 601 ++ D ++ +L + GK + L + G G AIQ LI++ + D Sbjct: 534 ATRDKDFIEHLFIGTNHQYMLFFTEKGKCFWLRVYEIPEGGKNTKGRAIQNLINIEPD-D 592 Query: 602 IVTAFV---------YDSTCKLLVVSSKG 621 +V A + Y ++ +++ + KG Sbjct: 593 LVKAVICTHDLKEKDYTNSHYVIMATKKG 621 >gi|78776839|ref|YP_393154.1| DNA gyrase subunit A [Sulfurimonas denitrificans DSM 1251] gi|78497379|gb|ABB43919.1| DNA gyrase subunit A [Sulfurimonas denitrificans DSM 1251] Length = 827 Score = 387 bits (993), Expect = e-105, Method: Compositional matrix adjust. Identities = 238/611 (38%), Positives = 369/611 (60%), Gaps = 32/611 (5%) Query: 9 SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68 SN L +N++ +++ L+ YL Y++S I RA+PD+RDG KPVHRRI++AM ++ L Sbjct: 2 SNLLHNDNIQTINIEETLQSSYLDYSMSVIVGRALPDVRDGLKPVHRRILYAMDKLSLSH 61 Query: 69 GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128 GA FKKSARIVG+VIG+ HPHGD +VYD+LVR+AQ F R L+ GQGNFG++DGD+AAA Sbjct: 62 GAKFKKSARIVGDVIGQYHPHGDTAVYDALVRMAQHFSMRMQLVDGQGNFGSVDGDNAAA 121 Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188 RYTEARMT+ A +L+ ++++ V+ D Y+ EP V P++ PNLL NG+SGIAVGMA Sbjct: 122 MRYTEARMTKYAGELLKDLEKNTVNMIDNYDGTTKEPDVMPTRVPNLLINGSSGIAVGMA 181 Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248 T+IP HN QEI AL+ NP I + +L+E+I PDFPTGG I ++ I+++Y GRG Sbjct: 182 TNIPPHNPQEIMMGLKALLANPNIELYELMEHIKAPDFPTGGTIF-GKKGIMDAYATGRG 240 Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AE 307 +VRA+ +E+ G I++ E+PYQV K+RLIE IA L+ K I + +IRDES E Sbjct: 241 RIKVRAKTHIEKKGNKD-IIIIDELPYQVNKARLIENIANLVKDKMIDGVSEIRDESDRE 299 Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367 +R+V+ K ++ ++++ ++F + M+ F + M + + + P++ + ILK ++ H Sbjct: 300 GIRVVIELKKDAM-SEIVLNNLFKQTSMQVTFGIIMLSI-LNQEPRIFGIIDILKHFINH 357 Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAII---RNEDKPKPVMVSRFSLT 424 R+ ++ RR+ F ++ R IL+GL A IDEII +I +N ++ + +VS F + Sbjct: 358 RKTIIIRRTIFDLEKAKARAHILEGLKKALDIIDEIIRVIKSSKNIEEARDNLVSEFDFS 417 Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484 Q +I+++RL L LE +I++EL LL ++S+L S + I E E+ Sbjct: 418 VIQAQSIVDMRLGRLTGLEREKIENELLELLKLITYLESILKSEEVLHGIIDQEFDELLT 477 Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--------KSH 536 I+ TD+ RRT + + +I EP+ V I++RG+I+ + K Sbjct: 478 IY---TDV--RRTDVEDDY---DDIDVEDLIPNEPMVVTITHRGYIKRVPLAQYEKQKRG 529 Query: 537 SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQ 591 A+ E D ++ +T D +L ++ G K Y +P G S G+A+ Sbjct: 530 GKGKIAVTTYEDDFIERFFTCNTHDTLLFVTDRGQLHWLKVYKIPEG---SRTAKGKAVV 586 Query: 592 LLIDLNHNQDI 602 L++L ++ I Sbjct: 587 NLLNLVADEQI 597 >gi|307151872|ref|YP_003887256.1| DNA gyrase subunit A [Cyanothece sp. PCC 7822] gi|306982100|gb|ADN13981.1| DNA gyrase, A subunit [Cyanothece sp. PCC 7822] Length = 852 Score = 387 bits (993), Expect = e-105, Method: Compositional matrix adjust. Identities = 259/736 (35%), Positives = 398/736 (54%), Gaps = 63/736 (8%) Query: 11 TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70 T E + L + + YL YA+S I RA+PD RDG KPVHRRI++AM E+GL Sbjct: 2 TTQPERIIPTDLSSEMSQSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTPDR 61 Query: 71 AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130 F+K AR+VGEV+GK HPHGD +VYD+LVR+AQ F R PLI G GNFG+ID D AA R Sbjct: 62 PFRKCARVVGEVLGKYHPHGDTAVYDALVRMAQNFSMRDPLIEGHGNFGSIDNDPPAAMR 121 Query: 131 YTEARMTQVA-ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189 YTE R+ ++ +L+ ++ + VDF DT++ EPVV P++ P LL NG+SGIAVGMAT Sbjct: 122 YTECRLQNLSVNALLRDIEAETVDFIDTFDGSQQEPVVLPARLPQLLLNGSSGIAVGMAT 181 Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249 +IP HN+ E+ + A+A+I NPEI+ +L++YI GPDFPTGG I+ R I ++Y GRG Sbjct: 182 NIPPHNLGELVDGAIAMIHNPEITNIELMKYIPGPDFPTGGQIL-GRSGIKDAYISGRGS 240 Query: 250 FRVRARWCVEEV---GRGSW-CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305 +R +E + GR I+VTE+PYQ K+ LIEKIAEL+ KRI + DIRDES Sbjct: 241 ITMRGVAEIETIQHRGRPDRDAIIVTELPYQTNKAALIEKIAELVNDKRIDGIADIRDES 300 Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365 D ++ R +++ +++ + ++ F NM L G PQ++ L L +L Sbjct: 301 DRDGMRIVIELKRDAYARVVLNNLYKQTPIQANFGANMLALVNGE-PQILNLKDFLGVFL 359 Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFS 422 R +V+ RR+++ ++ + R IL+GLL+A N+D II +IR + K +V +F Sbjct: 360 EFRVQVIIRRTTYELRKAEERDHILQGLLVALANLDPIIQLIRQAADTSSAKRELVEQFG 419 Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSE----------LDNLLAEKEKIDSLLNSGKQQW 472 L+E Q DAIL ++LR L LE +I++E L ++L +E++D ++ +++ Sbjct: 420 LSEVQADAILQMQLRRLTALESEKIQAEHQELQRKIADLTDILQRRERVDQII---QEEL 476 Query: 473 NQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS 532 Q+ KST RRT E + + +I E ++++ +G+I+ Sbjct: 477 TQL------------KSTHATPRRTQIVE---EEGGIVDIDLIANEQAVILLTEQGYIKR 521 Query: 533 LKSHSVDL--------SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR 584 + ++ S KE D ++ L D+IL S G Y + A + S Sbjct: 522 MPVNTFGQQSRATRGKSGAKIKEDDGVEHFLSCCDHDQILFFSDRGVVYVISAYQIPSSS 581 Query: 585 --GHGEAIQLLIDLNHNQDI-----VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR- 636 G I ++ + ++ I V+ F D + LV+ ++ AN R Sbjct: 582 RTARGVPIVQMLPIPKDEKITSMVAVSEFTED---QYLVMLTRQGYIKKTALSAYANIRA 638 Query: 637 KGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLI-FSID--QIPEMSR-GKGVRLQSY 692 G + +S ++++ V + ++G + + I F D Q+ + R +GVR S Sbjct: 639 NGLIAITLSEGDQLRWVRLAKEEDSIIIGTRQGMAIHFKADNEQLRPIGRTARGVR--SM 696 Query: 693 KDGGISDVICFKICEG 708 K G ++I I G Sbjct: 697 KLKGTDEIISVDILPG 712 >gi|114798624|ref|YP_761439.1| DNA gyrase subunit A [Hyphomonas neptunium ATCC 15444] gi|114738798|gb|ABI76923.1| DNA gyrase, A subunit [Hyphomonas neptunium ATCC 15444] Length = 926 Score = 387 bits (993), Expect = e-105, Method: Compositional matrix adjust. Identities = 237/615 (38%), Positives = 347/615 (56%), Gaps = 59/615 (9%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 ++ ++ +S+ L+ YL YA+S I RA+PD+RDG KPVHRRI+ AM+E G + Sbjct: 24 QDGIEGISIESELKSSYLDYAMSVIVSRALPDVRDGLKPVHRRILFAMNEGGNTPDKPYS 83 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSARIVG+VIGK HPHGD +VYD+LVR+AQPF PL+ GQGNFG+ID D AA RYTE Sbjct: 84 KSARIVGDVIGKYHPHGDSAVYDALVRMAQPFSMGVPLVDGQGNFGSIDNDPPAAMRYTE 143 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 +RMT+V +L +D+D VDF+D Y+ ++ EPVV P++FPNLL NG GIAVGMAT+IP Sbjct: 144 SRMTKVTTHLLADLDKDTVDFQDNYDGKEKEPVVLPAQFPNLLVNGGGGIAVGMATNIPP 203 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ EI +A LA+I++P I+ E L E + GPDFPTG +I+ S ++ GRG +R Sbjct: 204 HNLGEIIDATLAMIEDPAITDEALCEIVPGPDFPTGALIMGQSGS-RKALMTGRGSVIMR 262 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIV 312 ++ +EE G I+V+EIPYQV K+ +I KIAEL+ K+I + D+RDES + +R+V Sbjct: 263 SKTEIEEAKNGREAIIVSEIPYQVNKAAMITKIAELVREKKIEGISDLRDESDRNGIRVV 322 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 + K R D+++ ++ S +++ F +NM L+ GR P++M L +L+ ++ R EV+ Sbjct: 323 IELK-RDASADVVLNQLYRFSQLQSSFAVNMLALNGGR-PELMNLRKVLEYFITFREEVI 380 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK-----------------P 415 RR+ + R +L GL +A NIDE+I +IR P P Sbjct: 381 VRRTKHDLGKARDRAHVLVGLALAVANIDEVIRLIRTSPDPATARQRLLDKAWPQQDMGP 440 Query: 416 VM-------VSRFS------LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKID 462 ++ R S L++ Q +ILNL L L L +I +E L + + Sbjct: 441 LIDLIADRRTRRGSEEGTIYLSDEQARSILNLPLHRLTGLGRDEIGNEAKGLADKIAEYL 500 Query: 463 SLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCE--VSRADKATLQQAMIEKEPI 520 +L S + I E+ EVKE F+ RR+ F + V D + +IE E + Sbjct: 501 EILRSRPRILGIIKAELAEVKEKFAVP-----RRSQFVDGGVDMED-----EDLIEVEDM 550 Query: 521 TVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-- 570 V +++ G++ R+ S + K+ D + A T IL S+ G Sbjct: 551 VVTVTHGGYVKRTPLSTYRTQNRGGKGRSGMSMKDEDFIVRVFSATTHTEILFFSSAGMV 610 Query: 571 ---KAYTLPAGNLLS 582 K + LP G S Sbjct: 611 YKEKVWRLPIGGPTS 625 >gi|153940964|ref|YP_001392049.1| DNA topoisomerase IV subunit A [Clostridium botulinum F str. Langeland] gi|170756301|ref|YP_001782377.1| DNA topoisomerase IV subunit A [Clostridium botulinum B1 str. Okra] gi|152936860|gb|ABS42358.1| DNA topoisomerase, GyrA/ParC subunit family [Clostridium botulinum F str. Langeland] gi|169121513|gb|ACA45349.1| DNA topoisomerase, GyrA/ParC subunit family [Clostridium botulinum B1 str. Okra] gi|295320062|gb|ADG00440.1| DNA topoisomerase, GyrA/ParC subunit family [Clostridium botulinum F str. 230613] Length = 956 Score = 387 bits (993), Expect = e-105, Method: Compositional matrix adjust. Identities = 232/661 (35%), Positives = 387/661 (58%), Gaps = 41/661 (6%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 + N+ + L A+ E YL YA+ KERA+PD+RDG KPV RRI++ + + Sbjct: 10 DNNIISFPLEEAMPENYLPYAVEVSKERALPDVRDGLKPVQRRIVYGSYMLKAFPDKPYY 69 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSARIVG+++GK HPHGD SVYD++V LAQ F R PLI G GN+G+ DGDSAAA RYTE Sbjct: 70 KSARIVGDILGKYHPHGDSSVYDAMVILAQNFTTRMPLIDGHGNWGSQDGDSAAAMRYTE 129 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 AR+T +A +++ +D+D V+ D Y+ + EP V P+KFPN+L NG GIAVG+AT+IP Sbjct: 130 ARLTPIAMEMIRDIDKDVVNMVDNYSNSEKEPEVLPAKFPNILVNGAFGIAVGLATNIPP 189 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E+ + LA ID EI+ ++LL YI GPD PTGG+I+ ++S++ +Y G G +R Sbjct: 190 HNLGEVIDGTLAYIDKNEITTKELLNYIKGPDLPTGGVII-GKKSMLSAYETGEGRVTLR 248 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR----IPLLEDIRDESAED- 308 A+ +E++ G IV+TE P++ K++L++ I+E+ K+ + + DIRDES + Sbjct: 249 AKTTIEKLENGRLAIVITEFPFRKNKAKLLQFISEMTADKKHSKALENITDIRDESDRNG 308 Query: 309 VRIVL-FPKNRSLD-PDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366 +R V+ F K + D + ++ ++ +D+++ NM L+ G+ P+ + L +LK ++ Sbjct: 309 IRAVIEFKKIATQDVVEKTLKYLYKKTDLQSNISFNMVALADGK-PKTLGLKSMLKYYVE 367 Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSL 423 H++EV+ RR+ ++ ++R I++G + A +DEII IR K ++ +FS Sbjct: 368 HQKEVITRRTKRELEIAEKRFHIVEGFIKAIGIMDEIIKTIRESKSKKNARENLIEKFSF 427 Query: 424 TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483 T+ Q +AIL L L L LE + E L K+ +L S K+ I E+ EVK Sbjct: 428 TDIQAEAILELMLYKLTGLEVVAFEKEYKELEKLINKLTKILKSEKELLKVIKKELIEVK 487 Query: 484 EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSH---SV 538 E ++ +R+T+ E K +++ ++E E + + +SN G+ + +LKS+ S Sbjct: 488 ETYN-----DKRKTSIIEDDEKAKIDVEEIIVE-EDVVLTLSNEGFTKRIALKSYNRSSA 541 Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL-----L 593 ++ + ++EGD + + +T D + L++ +G Y + N+ + + ++L Sbjct: 542 NVEDIEYREGDFNRFIIQCNTKDTLCLVTKEGNMYQIKVINIPEFKWKEKGVKLDEIIKT 601 Query: 594 IDLNHNQDIVTAF-VYDSTCK--LLVVSSKG-------NAFIVEESEIIA-NTRKGKTFL 642 IDL ++ I+ AF + D T + +L ++ G + F ++I+A +KG++ + Sbjct: 602 IDL--SETIMEAFSIEDFTAQKDMLFITDSGYIKKTTLDKFNTNYTKIMALKLKKGESLV 659 Query: 643 K 643 K Sbjct: 660 K 660 >gi|119476907|ref|ZP_01617188.1| DNA gyrase subunit A [marine gamma proteobacterium HTCC2143] gi|119449714|gb|EAW30951.1| DNA gyrase subunit A [marine gamma proteobacterium HTCC2143] Length = 858 Score = 386 bits (992), Expect = e-105, Method: Compositional matrix adjust. Identities = 260/750 (34%), Positives = 400/750 (53%), Gaps = 112/750 (14%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 V++ L++ YL Y++S I RA+PD+RDG KPVHRR++ AMSE+ D+ ++KKSAR+V Sbjct: 15 VNIEDELKQSYLDYSMSVIVGRALPDVRDGLKPVHRRVLFAMSELNNDWNKSYKKSARVV 74 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGD +VY+++VR+AQ F RY L+ GQGNFG+IDGDSAAA RYTE RM ++ Sbjct: 75 GDVIGKYHPHGDSAVYETIVRMAQHFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRMRKI 134 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 + IL +D++ VD+ Y+ + P V P+K PNLL NG+SGIAVGMAT+IP HN+ E+ Sbjct: 135 SHEILADLDKETVDWVPNYDGTEQIPAVMPTKVPNLLINGSSGIAVGMATNIPPHNLNEV 194 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 A LALIDNP+I+I++L+E I GPDFPT II R IV++YR G+G +R+R VE Sbjct: 195 VTACLALIDNPDITIDELIEIIPGPDFPTAAII-NGRAGIVQAYRTGKGRIYIRSRAVVE 253 Query: 260 EVGR-GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318 + G I+++E+PYQV K+RLIEKIAEL+ K+I + ++RDES +D V+ R Sbjct: 254 TNEKTGKDTIIISELPYQVNKARLIEKIAELVKEKKIEGIAELRDESDKDGLRVVIEMKR 313 Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378 ++ + +++ + +E F +N+ L G+ P+++ L +L+ ++ HRREV+ RR+ + Sbjct: 314 GEMGEVCLNNLYSQTQLENVFGINIVALVDGQ-PRLLNLKQLLEYFVRHRREVVTRRTVY 372 Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV----------------MVSR-- 420 ++ R +L+GL +A NID +I +I++ D M++R Sbjct: 373 LLRRARERGHLLEGLAVAISNIDRMIELIKSSDTTAEAKEKLSAQGWELGDVSQMLARAG 432 Query: 421 -------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKI 461 + L+ QV AIL++RL+ L LE ++ E L E + Sbjct: 433 ESACRPDDLPENYGYIDGKYHLSPAQVQAILDMRLQKLTGLEHEKLLKEYQEKLEEIAEY 492 Query: 462 DSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPIT 521 S+L + I E+ I ++ D RR+ E +R A + +I +E Sbjct: 493 LSILGDAVKLMTVIR---EELDAIVNEYGD--ERRSEIIESTRDLTA---EDLITEEDRV 544 Query: 522 VVISNRGWIR--SLKSHSVDL------SALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573 V IS+ G+ + SL + SA K+ D ++ + A T D IL S GK Y Sbjct: 545 VTISHGGYAKTQSLSDYQAQRRGGMGKSATAVKDEDFVEHLMIASTHDTILCFSNVGKVY 604 Query: 574 TL---------------PAGNLL--------------------------SGRGHGEAIQL 592 L P NLL + G + +L Sbjct: 605 WLKVFHIPLASRNARGRPMVNLLPLGEDERITSILPVKEYTEGHYIFMATANGTVKKTEL 664 Query: 593 L------------IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEI--IANTRKG 638 ++L ++ V + TC +++ SS G A E+++ + T KG Sbjct: 665 TNFARQRSVGLRALELEEGDVLIGTAVTNGTCDVMLFSSSGKAVRFNENDVRAMGRTAKG 724 Query: 639 KTFLKVSSEEKM-KLVVKVTGDHVAVVGEN 667 ++++ +KM L+V G + V EN Sbjct: 725 VRGIRMADGQKMISLLVPKDGGRMLSVSEN 754 >gi|53713702|ref|YP_099694.1| DNA gyrase A subunit [Bacteroides fragilis YCH46] gi|60681973|ref|YP_212117.1| DNA gyrase A subunit [Bacteroides fragilis NCTC 9343] gi|253565650|ref|ZP_04843105.1| conserved hypothetical protein [Bacteroides sp. 3_2_5] gi|265764026|ref|ZP_06092594.1| DNA gyrase, A subunit [Bacteroides sp. 2_1_16] gi|52216567|dbj|BAD49160.1| DNA gyrase A subunit [Bacteroides fragilis YCH46] gi|60493407|emb|CAH08193.1| DNA gyrase A subunit [Bacteroides fragilis NCTC 9343] gi|251945929|gb|EES86336.1| conserved hypothetical protein [Bacteroides sp. 3_2_5] gi|263256634|gb|EEZ27980.1| DNA gyrase, A subunit [Bacteroides sp. 2_1_16] gi|301163411|emb|CBW22962.1| DNA gyrase A subunit [Bacteroides fragilis 638R] Length = 845 Score = 386 bits (992), Expect = e-105, Method: Compositional matrix adjust. Identities = 251/772 (32%), Positives = 424/772 (54%), Gaps = 47/772 (6%) Query: 12 LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71 L ++ + +++ ++ Y+ Y++S I RA+PD+RDGFKPVHRRI++ M E+G Sbjct: 2 LEQDRIIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILYGMMELGNTSDKP 61 Query: 72 FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131 +KKSARIVGEV+GK HPHGD SVY ++VR+AQ + RYPL+ GQGNFG++DGDS AA RY Sbjct: 62 YKKSARIVGEVLGKYHPHGDSSVYFAMVRMAQEWAMRYPLVDGQGNFGSVDGDSPAAMRY 121 Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191 TEAR+ ++ E ++Q + ++ VDF ++ EP V P++ PNLL NG SGIAVGMAT++ Sbjct: 122 TEARLNKLGEEMMQDLYKETVDFEPNFDNTLMEPKVMPTRIPNLLVNGASGIAVGMATNM 181 Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251 P HN+ E+ +A A +DN ++++E+L+EY+ PDFPTGG I + E+Y GRG Sbjct: 182 PPHNLSEVIDACEAYLDNKDVTVEELMEYVKAPDFPTGGYIY-GISGVREAYLTGRGRVV 240 Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVR 310 +RA+ +E G+ IVVTEIPY V K+ LI+ IA+L+ KRI + + DES E +R Sbjct: 241 MRAKAEIES-GQTHDKIVVTEIPYNVNKAELIKAIADLVNEKRIEGISNANDESDREGMR 299 Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370 IV+ K R + +++ ++ ++ ++T F +N L GR P+++ L ++ ++ HR + Sbjct: 300 IVIDIK-RDANASVVLNKLYKMTALQTSFGVNNVALVNGR-PKMLNLRDLIVYFVEHRHD 357 Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQ 427 V+ RR+ F ++ R IL+GL+IA NIDE+I IIR P ++ RF+L+E Q Sbjct: 358 VVIRRTQFDLRKAKERAHILEGLIIASDNIDEVIRIIRAAKTPNDAISGLMERFNLSEIQ 417 Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487 AI+ +RLR L L + Q+ +E + ++ + ++S+L + I E+ EV+ + Sbjct: 418 ARAIVEMRLRQLTGLMQDQLHAEYEEVMKQIAYLESILADDEVCRKVIKDELLEVRAKYG 477 Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVD 539 RR+ E+ + + + + + + IS+ G+I R+ V Sbjct: 478 DE-----RRS---EIVYSSEEFNPEDFYADDQMIITISHMGYIKRTPLTEFRAQNRGGVG 529 Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLN 597 ++ D ++ A + ++ + GK Y L + G G AIQ L++++ Sbjct: 530 SKGTETRDEDFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTKNSKGRAIQNLLNID 589 Query: 598 HNQDIVTAFV---------YDSTCKLLVVSSKGNAFIVEESEIIANTR---KGKTFLKVS 645 + D V A++ Y ++ +L + G +++++ + +R G + + Sbjct: 590 SD-DAVNAYLRVKSLNDQEYINSHYVLFCTKNG---VIKKTSLEQYSRPRQNGVNAITIR 645 Query: 646 SEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDV--- 700 ++++ V G++ + + N + + F + M R GVR + D G +V Sbjct: 646 EDDRVIEVRMTNGNNEIIIANRNGRAIRFHEAAVRVMGRTATGVRGITLDDDGQDEVIGM 705 Query: 701 ICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752 IC K E + + + + Y + + RGG G ++GK ++ Sbjct: 706 ICIKDLETESVMVVSEQGYGKRSDIEDYRKTNRGGKGVKTMNITEKTGKLVT 757 >gi|15806912|ref|NP_295636.1| DNA gyrase subunit A [Deinococcus radiodurans R1] gi|6459698|gb|AAF11467.1|AE002030_6 DNA gyrase, subunit A [Deinococcus radiodurans R1] Length = 812 Score = 386 bits (992), Expect = e-105, Method: Compositional matrix adjust. Identities = 253/761 (33%), Positives = 414/761 (54%), Gaps = 66/761 (8%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 ++ V + ++ ++ YA++ I +RA+PD+RDG KPV RRI++AM + GL KSA Sbjct: 4 IQPVDITSEVKTNFINYAMNVIVDRALPDVRDGMKPVQRRIMYAMLQEGLASNVKHAKSA 63 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 +VGEV+ + HPHGD S+YD++VRL Q + RY L+ QGNFG++DGD AAA RYTEARM Sbjct: 64 SVVGEVMKRYHPHGDSSIYDAMVRLGQWWNMRYTLVDPQGNFGSMDGDMAAAMRYTEARM 123 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 T+VAE IL ++++ VD + Y+E +EP V PS PNLL NG SGIAVGMAT+IP HN+ Sbjct: 124 TKVAEEILADLEKETVDLKPNYDETTTEPTVLPSAVPNLLINGASGIAVGMATNIPPHNL 183 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 EI LALIDNP I++++++ ++ GPDFPTGG I ++ I E+Y G G +VR + Sbjct: 184 TEISNGLLALIDNPAITLDEMMTHVQGPDFPTGGRI--AKVGIREAYATGHAGLKVRGKA 241 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES--AEDVRIVLF 314 +EE G I+++EIPYQ+ K+ L++ I+ + A +IP + +RDES E VRIV+ Sbjct: 242 RIEEGKNGRTQIIISEIPYQLNKTNLLQTISAMYKAGKIPDIGALRDESDRKEPVRIVIE 301 Query: 315 PKNRSLD-PDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373 K + L++ ++ + +++ + + MN+ + P+V+PL ++ +L HRR+V+ Sbjct: 302 LKRSAAGMGTLVLNQLYKYTQLQSSYTV-MNLSIVNGEPRVLPLIDTMRYFLDHRRDVVT 360 Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDA 430 RR+ + ++ R +L+GLL A +IDE+I++IR + + + +++RF L+E Q A Sbjct: 361 RRTVYDLRKAKERAHVLEGLLKALDHIDEVISLIRASNTGAEARDGLMARFGLSEIQAQA 420 Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490 IL++RL+ L LE +++ E D L +++S+L K W +I EIR++++ + + Sbjct: 421 ILDMRLQRLVGLEREKLQGEYDELQKTITRLESILGDEKLLWREIKKEIRDIRDRYGDA- 479 Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSA 542 RR+ E+ ++ ++ +I E + + ++ G++ R K S Sbjct: 480 ----RRSVITEL---EEDINKEDLIAVEDMVITMTRAGYVKRTNLTAYREQKRGGRGSSG 532 Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLP-AG---------NLLSGRGHG 587 +E D+ T D +L + G K Y LP AG NLL G Sbjct: 533 GKLREEDANTGVFVGSTHDYLLFFTDQGRVFHEKIYDLPEAGRDAKGTHIRNLLPGLRDD 592 Query: 588 EAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIA-NTRKGKTFLKVSS 646 E I ++ ++ D +F++ + ++ S + + + +IA N + G + V Sbjct: 593 ENIASVLSVS-GFDQPGSFIFATKSGVIKKSLITDYANITSAGLIAINLQPGDELIGVD- 650 Query: 647 EEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKIC 706 ++ GD V + +N + + F + + R VI ++ Sbjct: 651 -------IQQDGDDVVLATKNGQAMRFEATLVRDTGR------------ATQGVIGIRLR 691 Query: 707 EGLTWIDSAGRSYNRSENDLLG----WLGKRGGVGSLVPKG 743 EG + A N E +LL LGKR V KG Sbjct: 692 EGDEVVSMALVPGNDEEGELLAISECGLGKRTKVSDYPSKG 732 >gi|330864105|emb|CBX74177.1| DNA gyrase subunit A [Yersinia enterocolitica W22703] Length = 481 Score = 386 bits (992), Expect = e-105, Method: Compositional matrix adjust. Identities = 212/466 (45%), Positives = 296/466 (63%), Gaps = 42/466 (9%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + V++ L+ YL YA+S I RA+PD+RDG KPVHRR+++AM+ +G D+ +KKSA Sbjct: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKPYKKSA 67 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD++VYD++VR+AQPF RY L+ GQGNFG++DGDSAAA RYTE RM Sbjct: 68 RVVGDVIGKYHPHGDRAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRM 127 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 +++A +L +++D VDF Y+ + P V P+K PNLL NG+SGIAVGMAT+IP HN+ Sbjct: 128 SKIAHELLADLEKDTVDFVPNYDGTEQIPAVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ + LA I++ I+IE L+EYI GPDFPT II R I E+YR GRG +RAR Sbjct: 188 SEVIDGCLAYIEDENITIEGLMEYIPGPDFPTAAII-NGRRGIEEAYRTGRGKVYIRARA 246 Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314 VE + G I+V EIPYQV K+RLIEKIAEL+ KR+ + +RDES +D +RIV+ Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIE 306 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K ++ ++++ +++ L+ ++ F +NM LS G+ P+++ L IL ++ HRREV+ R Sbjct: 307 IKRDAVG-EVVLNNLYSLTQLQVTFGINMVALSQGQ-PKLLNLKDILVAFVRHRREVVTR 364 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK----------------PVMV 418 R+ F ++ R IL+ L IA NID II +IR P M+ Sbjct: 365 RTIFELRKARDRAHILEALAIALANIDPIIELIRRAATPAEAKAGLIASPWELGNVAAML 424 Query: 419 SR---------------------FSLTENQVDAILNLRLRSLRKLE 443 R + LTE Q AIL+LRL+ L LE Sbjct: 425 ERAGGDAARPEWLEAEFGIRDGKYYLTEQQAQAILDLRLQKLTGLE 470 >gi|114563301|ref|YP_750814.1| DNA gyrase, A subunit [Shewanella frigidimarina NCIMB 400] gi|114334594|gb|ABI71976.1| DNA gyrase subunit A [Shewanella frigidimarina NCIMB 400] Length = 909 Score = 386 bits (992), Expect = e-105, Method: Compositional matrix adjust. Identities = 243/638 (38%), Positives = 365/638 (57%), Gaps = 63/638 (9%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 ++ +++ L+ YL YA+S I RA+PD+RDG KPVHRR++ AMSE+ D+ +KKS Sbjct: 7 SISPINIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELKNDWNKPYKKS 66 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 AR+VG+VIGK HPHGD +VYD++VR+AQPF RY LI GQGNFG++DGDSAAA RYTE R Sbjct: 67 ARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYTLIDGQGNFGSVDGDSAAAMRYTEIR 126 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 M ++A +L ++++ VDF Y+ + P V P++ PNLL NG+SGIAVGMAT+IP HN Sbjct: 127 MQKLAHSLLADLEKETVDFVPNYDGTEMIPAVLPTRVPNLLINGSSGIAVGMATNIPPHN 186 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 + E+ + LALI++P +SIE+L+EYI GPDFPT I R+ I+++Y GRG +R++ Sbjct: 187 LTEVVKGCLALIEDPSLSIEQLMEYIPGPDFPTAASI-NGRKGIIDAYNTGRGRAIMRSK 245 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314 +E G I+V EIPYQV K+RLIEKIAEL+ K++ + +RDES +D +RIV+ Sbjct: 246 AEIETEENGRERIIVHEIPYQVNKARLIEKIAELVKDKKLEGISGLRDESDKDGMRIVIE 305 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K R ++++ +++ + M+ F +NM L+ G+ P++ L +L+ ++ HRREV+ R Sbjct: 306 IK-RGEVGEVVLNNLYSQTQMQCSFGINMVALTNGQ-PKLFNLKEMLECFILHRREVVTR 363 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-------------------------- 408 R+ F ++ R +L+ L IA NID IIA+I+ Sbjct: 364 RTVFELRKARERAHVLEALAIALANIDPIIALIKASPTPAEAKAKLVAQGWELGHVQGML 423 Query: 409 ---NEDKPKP--------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457 +D +P + ++ LTE Q AIL LRL L LE +I +E + LL Sbjct: 424 EKAGDDAARPEWLEPEFGIRDGQYYLTEQQAQAILELRLHRLTGLEHDKILAEYEELL-- 481 Query: 458 KEKIDSLLNSGKQQWNQIACEIREV--KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMI 515 +L +G + + EV +E+ G R T + D + + +I Sbjct: 482 ------VLIAGLLFILRTPSRLMEVIKEELEEILEQYGDERRTIINANEIDMSL--EDLI 533 Query: 516 EKEPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567 +E + V +S+ G+ + + + +A K+ D ++ L A+T D IL S Sbjct: 534 NEEDVVVTLSHLGYAKYQVLSDYQAQRRGGKGKAATKVKDEDFVEKLLVANTHDTILCFS 593 Query: 568 TDGKAYTLPAGNL-LSGR-GHGEAIQLLIDLNHNQDIV 603 GK Y L L L+ R G I L+ L+ + I Sbjct: 594 DFGKMYWLKVYQLPLASRTARGRPIVNLLPLSDGEHIT 631 >gi|329938632|ref|ZP_08288028.1| DNA gyrase subunit A [Streptomyces griseoaurantiacus M045] gi|329302123|gb|EGG46015.1| DNA gyrase subunit A [Streptomyces griseoaurantiacus M045] Length = 864 Score = 386 bits (992), Expect = e-105, Method: Compositional matrix adjust. Identities = 230/633 (36%), Positives = 358/633 (56%), Gaps = 35/633 (5%) Query: 12 LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71 ++ + V+ V L ++ YL YA+S I RA+PD+RDG KPVHRR+++AM + G Sbjct: 15 VIAQRVEPVGLETEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMYDGGYRPERG 74 Query: 72 FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131 F K AR+VG+V+G HPHGD S+YD+LVRLAQP+ R PL+ GNFG+ D AAA RY Sbjct: 75 FYKCARVVGDVMGNYHPHGDSSIYDALVRLAQPWSMRMPLVDSNGNFGSPGNDPAAAMRY 134 Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191 TE +M ++ +++ +DE+ VDF D Y+ EP V PS+FPNLL NG++GIAVGMAT+I Sbjct: 135 TECKMAPLSMEMVRDIDEETVDFTDNYDGRSQEPTVLPSRFPNLLINGSAGIAVGMATNI 194 Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYII----GPDFPTGGIIVESRESIVESYRLGR 247 P HN++E+ A +++PE E+LLE +I GPDFPTG ++V R+ I E+YR GR Sbjct: 195 PPHNLREVAAGAQWCLEHPEAPQEELLEALIERIKGPDFPTGALVV-GRKGIEEAYRTGR 253 Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307 G +RA VEE+ + C+VVTE+PYQ L +KIA+L+ ++ + D+RDE++ Sbjct: 254 GSITMRAVVAVEEI-QNRQCLVVTELPYQTNPDNLAQKIADLVKDGKVGGIADVRDETSS 312 Query: 308 DV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365 R+V+ K R +++ +++ +D++T F NM L G VP+ + LD ++ W+ Sbjct: 313 RTGQRLVIVLK-RDAVAKVVLNNLYKHTDLQTNFGANMLALVDG-VPRTLSLDAFIRHWV 370 Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFS 422 H+ EV+ RR+ FR++ + R IL+GLL A IDE+IA+IR D + ++ Sbjct: 371 THQIEVVVRRTRFRLRKAEERAHILRGLLKALDAIDEVIALIRRSDTVEIARGGLMGLLE 430 Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482 + E Q +AIL ++LR L LE +I E D L A+ + + +L S +Q ++ E+ + Sbjct: 431 IDEIQANAILEMQLRRLAALERQKIVQEHDELQAKITEYNEILASPVRQRGIVSAELAAI 490 Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLK 534 E + R+T D + +I +E I V ++ G++ R+ K Sbjct: 491 VEKYGDD-----RQTKLVPY---DGDMSIEDLIAEEDIVVTVTRGGYVKRTKTDDYRAQK 542 Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEAIQL 592 + KE D + + T +L + G+ Y A L +GR G+ + Sbjct: 543 RGGKGVRGAKLKEDDIVDHFFVSTTHHWLLFFTNKGRVYRAKAYELPDAGRDARGQHVAN 602 Query: 593 LIDLNHNQDIVTAFV---YDSTCKLLVVSSKGN 622 L+ ++ I YD+ LV+++KG Sbjct: 603 LLAFQPDEAIAEILAIRDYDA-APYLVLATKGG 634 >gi|323141427|ref|ZP_08076317.1| DNA gyrase, A subunit [Phascolarctobacterium sp. YIT 12067] gi|322414083|gb|EFY04912.1| DNA gyrase, A subunit [Phascolarctobacterium sp. YIT 12067] Length = 816 Score = 386 bits (992), Expect = e-105, Method: Compositional matrix adjust. Identities = 211/511 (41%), Positives = 324/511 (63%), Gaps = 16/511 (3%) Query: 26 LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85 +++ Y+ YA+S I +RA+PD+RDG KPVHRRI++AM E G+ +KKSARIVG+V+GK Sbjct: 19 MQKSYIDYAMSVIIQRALPDVRDGLKPVHRRILYAMQEAGMTPTKPYKKSARIVGDVLGK 78 Query: 86 LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145 HPHGD SVYD++VRLAQ F RY ++ G GNFG+IDGDS AA RYTE RM ++AE +L+ Sbjct: 79 YHPHGDISVYDAIVRLAQDFSTRYLMVDGHGNFGSIDGDSPAAMRYTEVRMAKIAEAMLE 138 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 +++D VDF Y+E EP V PSK P LL NG++GIAVGMAT+IP HN+ E+ + Sbjct: 139 DIEKDTVDFVPNYDESLKEPSVLPSKVPALLINGSAGIAVGMATNIPPHNLCEVVNGLVM 198 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265 LIDNP++ I +L+ I GPDFPTG I+ +E I +Y GRG ++RA+ + +G Sbjct: 199 LIDNPDVEIPQLMTAIKGPDFPTGACIL-GKEGITSAYNTGRGVVKIRAKAEIVPANKGK 257 Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA--EDVRIVLFPKNRSLDPD 323 IV+TEIPYQV K+ LI+ IA L I + + D S+ + ++IV+ K+ ++ PD Sbjct: 258 HHIVITEIPYQVNKANLIKDIANLAKDGVIEGITKVDDFSSLKDGMKIVVELKSDAV-PD 316 Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383 +++ ++ + +++ F + M L G+ P+V+ L +L+ +L H+++V+ RR+ + + Sbjct: 317 VVLNRLYKHTALQSSFGIIMLALVNGQ-PRVLNLKQVLEYYLEHQKDVITRRTRYELGKA 375 Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAILNLRLRSLR 440 R IL+GL IA NID +I+ IR + + ++ F L++ Q AIL++RL+ L Sbjct: 376 KDRAHILEGLKIALDNIDAVISTIRGSATAEIARTALMENFKLSQRQAQAILDMRLQRLT 435 Query: 441 KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500 LE +I E +LL + ++S+L + N I +++E+K+ F RRT Sbjct: 436 GLERKKIDEEYVDLLETIDWLESVLADEHKVMNIIKEDLQEMKKRFGDE-----RRT--- 487 Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIR 531 E+S + +I +E I V IS++G+I+ Sbjct: 488 EISIDSSEMDIEDLIAEEDIVVTISHQGYIK 518 >gi|186680575|ref|YP_001863771.1| DNA gyrase subunit A [Nostoc punctiforme PCC 73102] gi|186463027|gb|ACC78828.1| DNA gyrase, A subunit [Nostoc punctiforme PCC 73102] Length = 871 Score = 386 bits (992), Expect = e-105, Method: Compositional matrix adjust. Identities = 252/738 (34%), Positives = 409/738 (55%), Gaps = 48/738 (6%) Query: 11 TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70 T +E + + LR + + YL YA+S I RA+PD RDG KPVHRRI++AM E+GL Sbjct: 2 TTSQERIIPIDLRTEMSQSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMHELGLLHDR 61 Query: 71 AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130 FKK AR+VGEV+GK HPHGD +VYD+LVR+AQ F R PL++G GNFG++D D AA R Sbjct: 62 PFKKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRSPLVNGHGNFGSVDNDPPAAMR 121 Query: 131 YTEARMTQVAEL-ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189 YTE R+ + +L ++ + VDF D ++ EP V P++ P LL NG+SGIAVGMAT Sbjct: 122 YTECRLQALTSAGLLHDIEYETVDFADNFDGSQQEPTVLPARIPQLLLNGSSGIAVGMAT 181 Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249 +IP HN+ E+ +A +A+I NPEI+ +L++Y+ GPDFPTG I+ + +I E+Y GRG Sbjct: 182 NIPPHNLGELIDALVAVIHNPEITDLELMQYVHGPDFPTGAQILGT-SAIREAYTTGRGS 240 Query: 250 FRVRARWCVEEV---GRGSW-CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305 +R +E V GR I++TE+PYQ K+ LIEKIAE++ KR+ + DIRDES Sbjct: 241 ITMRGVANIETVEQRGRPDREAIIITELPYQTNKAALIEKIAEMVNEKRLEGIADIRDES 300 Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365 D V+ R P +++ +++ + ++ F NM L + PQV+ L L +L Sbjct: 301 DRDGMRVVIELKRDAYPRVVLNNLYKQTPLQANFGANMLAL-VNSEPQVLTLKQFLSVFL 359 Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE-DKP--KPVMVSRFS 422 R E + RR+ + ++ + R +L+GLLIA +D II +IR+ D P K +++ + Sbjct: 360 DFRIESIARRTRYELRKAEERDHLLQGLLIALSQLDPIIVLIRHAPDAPTAKGELITTYG 419 Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482 L+E Q DAIL ++LR L LE +I+ E D L A+ + +L ++ I E+ ++ Sbjct: 420 LSEVQADAILQMQLRRLTALEADKIRLEHDELQAKITDLQDILARRERVLEIIETEVAQL 479 Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL-- 540 K F+ RRT + + +I E ++++ +G+I+ + ++ + Sbjct: 480 KTNFATP-----RRTVILP---GEGELDDRDLIANEKAIILVTEQGYIKRMPVNTFEAQS 531 Query: 541 ------SALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEA 589 +A K+ D+++ L D IL S G +AY +PA + S G Sbjct: 532 RATRGKAAAKVKDDDTIEHFLTCCDHDSILFFSERGVVYCLRAYQIPASSRTS---RGTP 588 Query: 590 IQLLIDLNHNQDIVTAFVYD--STCKLLVVSSKGNAFIVEESEIIANTR-KGKTFLKVSS 646 I ++ + + I + D S+ + LV+ +KG ++++E+ A + + + +S Sbjct: 589 IVQMLPIPKEEKITSIVPVDEFSSEEYLVMLTKGGN--IKKTELAAFSHIRANGLIAISL 646 Query: 647 EE--KMKLVVKVTGDHVAVVGENRKLLI---FSIDQIPEMSRG----KGVRLQSYKDGGI 697 EE +++ V + + ++G + I + +Q+ +SR K ++L++ + Sbjct: 647 EEGDQLRWVRRARVEDSVIIGSRNGMAINFRCNHEQLRPLSRATRGVKAMKLKNKDELVG 706 Query: 698 SDVICFKICEGLTWIDSA 715 D++ I E L + A Sbjct: 707 MDILPAAILETLDIVTEA 724 >gi|30248349|ref|NP_840419.1| DNA gyrase subunit A [Nitrosomonas europaea ATCC 19718] gi|30138235|emb|CAD84243.1| DNA gyrase/topoisomerase IV, subunit A [Nitrosomonas europaea ATCC 19718] Length = 848 Score = 386 bits (992), Expect = e-105, Method: Compositional matrix adjust. Identities = 253/743 (34%), Positives = 393/743 (52%), Gaps = 67/743 (9%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 VSL + YL YA+S I RA+PD+RDG KPVHRR+++AM E+ D+ +KKSARIV Sbjct: 11 VSLEDEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELSNDWNRPYKKSARIV 70 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG+IDGD+AAA RYTE RM+++ Sbjct: 71 GDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDNAAAMRYTEIRMSRI 130 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A +L +D++ VDF Y+ + EP++ P+K PNLL NG+SGIAVGMAT+IP HN+ E+ Sbjct: 131 AHELLADLDKNTVDFGPNYDGSEQEPLILPAKIPNLLINGSSGIAVGMATNIPPHNLGEV 190 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 +A L L+ +P++ I +L+ I PDFPT GII I + Y+ GRG +RAR E Sbjct: 191 IDACLLLLRDPDVDIAELMACIPAPDFPTAGIIY-GISGIKDGYQTGRGRVIMRARTHFE 249 Query: 260 EVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318 E+ +G+ I++ E+PYQV K+ L+ +I EL+ KRI + D+RDES + V+ R Sbjct: 250 ELDKGNRHSIIIDELPYQVNKANLLVRIGELVRDKRIEGISDLRDESDKSGMRVVIELKR 309 Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378 P++++ +++ + M+ F +NM L G+ P+++ L +L +L HRREV+ RR+ F Sbjct: 310 GEVPEVVLNNLYKETQMQDTFGINMVALVDGQ-PRLLNLKQMLDHFLRHRREVVTRRTLF 368 Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR--------------- 420 ++ R +L+GL +A N+DEIIA+I+ P K +++R Sbjct: 369 ELRKARERGHLLEGLAVALSNVDEIIALIKAAPTPAEAKKGLMARTWRSSLVEEMLLRAM 428 Query: 421 ---------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKE 459 + L++ Q AIL+LRL+ L LE+ +I SE +L + Sbjct: 429 IDAAVFRPETLAAGFGMSDQGYRLSDAQAQAILDLRLQRLTGLEQEKIVSEYREILDKIR 488 Query: 460 KIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEP 519 + +L + ++ I E+ +K F RR + + + +I Sbjct: 489 DLLDILANPERITTIIVEELTAIKGQFGDP----RRSEVVIDAQNLNT----EDLITPAD 540 Query: 520 ITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGK 571 + V +S+ G+I R+ K A+ +E D + A+T D IL S+ G+ Sbjct: 541 MVVTLSHAGYIKSQLLDDYRAQKRGGRGKQAITTREDDFIDNLFIANTHDFILCFSSLGR 600 Query: 572 AYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIV 626 Y + N+ G G + L+ L N+ I +D T + + ++ G Sbjct: 601 VYWIKVYNVPQGSRTSRGRPVNNLVPLEQNEKINAVLPVKSFDDTRYVFMSTAGGTVKKT 660 Query: 627 EESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQI-PEMSRG 684 SE G + + + + V G H V + + K + F + + P Sbjct: 661 PLSEFSRPRTNGIIAIDLDEGDYLIGVALTEGKHDVMLFSDAGKAMRFDENDVRPTGRNA 720 Query: 685 KGVRLQSYKDGGISDVICFKICE 707 +GVR K G VI + + Sbjct: 721 RGVR--GMKLGAGQQVISLLVAD 741 >gi|302559660|ref|ZP_07312002.1| DNA gyrase, A subunit [Streptomyces griseoflavus Tu4000] gi|302477278|gb|EFL40371.1| DNA gyrase, A subunit [Streptomyces griseoflavus Tu4000] Length = 865 Score = 386 bits (992), Expect = e-105, Method: Compositional matrix adjust. Identities = 223/581 (38%), Positives = 338/581 (58%), Gaps = 29/581 (4%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 V+ V L ++ YL YA+S I RA+PD+RDG KPVHRR+++AM + G F K A Sbjct: 21 VEPVGLETEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMYDGGYRPERGFYKCA 80 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+V+G HPHGD S+YD+LVRLAQP+ R PL+ GNFG+ D AAA RYTE +M Sbjct: 81 RVVGDVMGNYHPHGDSSIYDALVRLAQPWSMRMPLVDSNGNFGSPGNDPAAAMRYTECKM 140 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 ++ +++ +DE+ VDF D Y+ EP V P++FPNLL NG++GIAVGMAT+IP HN+ Sbjct: 141 APLSMEMVRDIDEETVDFTDNYDGRSQEPTVLPARFPNLLINGSAGIAVGMATNIPPHNL 200 Query: 197 QEICEAALALIDNPEISIEKLLEYII----GPDFPTGGIIVESRESIVESYRLGRGGFRV 252 +E+ A ++NPE S E+LL+ +I GPDFPTG ++V R+ I E+YR GRG + Sbjct: 201 REVAAGAQWYLENPEASHEELLDALIDRIKGPDFPTGALVV-GRKGIEEAYRTGRGSITM 259 Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV--R 310 RA VEE+ + C+VVTE+PYQ L +KIA+L+ +I + D+RDE++ R Sbjct: 260 RAVVEVEEI-QNRQCLVVTELPYQTNPDNLAQKIADLVKDGKIGGIADVRDETSSRTGQR 318 Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370 +V+ K R +++ +++ +D++T F NM L G VP+ + LD ++ W+AH+ E Sbjct: 319 LVIVLK-RDAVAKVVLNNLYKHTDLQTNFGANMLALVDG-VPRTLSLDAFIRHWVAHQIE 376 Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQ 427 V+ RR+ FR++ + R IL+GLL A IDE+IA+IR D + ++ + E Q Sbjct: 377 VIVRRTRFRLRKAEERAHILRGLLKALDAIDEVIALIRRSDTVEIARGGLMDLLEIDEIQ 436 Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487 +AIL ++LR L LE +I E D L A+ + + +L S +Q ++ E+ + E F Sbjct: 437 ANAILEMQLRRLAALERQKIVQEHDELQAKISEYNEILASPVRQRGIVSQELAAIVEKF- 495 Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------D 539 G R T D + + +I +E I V ++ G+I+ K+ Sbjct: 496 -----GDDRKTKLIPYEGDMSI--EDLIAEEDIVVTVTRGGYIKRTKTDDYRAQKRGGKG 548 Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL 580 + KE D + + T +L + G+ Y + A L Sbjct: 549 VRGTKLKEDDIVNHFFVSTTHHWLLFFTNKGRVYRVKAYEL 589 >gi|187924985|ref|YP_001896627.1| DNA gyrase subunit A [Burkholderia phytofirmans PsJN] gi|187716179|gb|ACD17403.1| DNA gyrase, A subunit [Burkholderia phytofirmans PsJN] Length = 878 Score = 386 bits (991), Expect = e-105, Method: Compositional matrix adjust. Identities = 229/612 (37%), Positives = 348/612 (56%), Gaps = 67/612 (10%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 +SL + YL YA+S I RA+PD+RDG KPVHRR+++AM E+ D+ A+KKSARIV Sbjct: 11 ISLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNRAYKKSARIV 70 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGD +VYD++VR+AQ F RY L+ GQGNFG++DGD+AAA RYTE RM ++ Sbjct: 71 GDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAKI 130 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 +L +D++ VDF Y+ ++EP + P++ PNLL NG+SGIAVGMAT+IP HN+ E+ Sbjct: 131 GHELLADIDKETVDFTPNYDGSENEPAILPARIPNLLINGSSGIAVGMATNIPPHNLNEV 190 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 +A L+ NPE +I++L+E I PDFPT GII + + YR GRG +RA E Sbjct: 191 VDACQHLLKNPEATIDELIEIIPAPDFPTAGIIY-GVAGVRDGYRTGRGRVVMRALTHFE 249 Query: 260 EVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318 E+ RG I+V E+PYQV K L+E+IAEL+ K++ + DIRDES + V+ R Sbjct: 250 EIDRGQRMSIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKR 309 Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378 P++++ +++ + ++ F +NM L G+ P+++ L +L +L+HRREVL RR+ + Sbjct: 310 GEVPEVVLNNLYKATQLQDTFGMNMVALVDGQ-PKLLNLKEMLSCFLSHRREVLTRRTVY 368 Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV-----------------MVSR- 420 ++ R +L+GL +A NIDE IAII+ P P+ M+SR Sbjct: 369 ELRKARERGHVLEGLAVALANIDEFIAIIKAAPTP-PIAKQELMARPWDSSLVREMLSRA 427 Query: 421 -----------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451 + L++ Q IL +RL+ L LE+ +I E Sbjct: 428 ETENATAGGRDAYRPDGLNPSFGMQSDGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEY 487 Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511 ++A+ + +L + +I I V E+ S + G R + E++ + T Sbjct: 488 REVMAQIADLLDIL----ARPERITAII--VDELTSIKAEFGDARRSKIELNATELNT-- 539 Query: 512 QAMIEKEPITVVISNRGWIRS--LKSHSVD------LSALHFKEGDSLKIALHAHTTDRI 563 + +I + + V +S+ G+++S L +S A KE D + A+T D I Sbjct: 540 EDLITPQEMVVTMSHAGYVKSQPLSEYSAQKRGGRGKQATAMKEDDWIDTLFIANTHDHI 599 Query: 564 LLLSTDGKAYTL 575 L S G+ Y++ Sbjct: 600 LCFSNRGRVYSV 611 >gi|168699792|ref|ZP_02732069.1| DNA gyrase subunit A [Gemmata obscuriglobus UQM 2246] Length = 779 Score = 386 bits (991), Expect = e-105, Method: Compositional matrix adjust. Identities = 254/726 (34%), Positives = 400/726 (55%), Gaps = 60/726 (8%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM-SEMGLDFGAAFK 73 E ++ V++ + R+L YA+S +K RA+PD+RDG KPV RRI++AM ++ L Sbjct: 3 ETIETVTIADEVRTRFLTYAMSVVKGRALPDVRDGLKPVQRRILYAMFQDLKLTVDKKAL 62 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 K A+IVGEV+G HPHGD ++Y++LVR++Q +V R PL+ GQGNFG++DGD AAYRYTE Sbjct: 63 KCAKIVGEVMGNYHPHGDSALYEALVRMSQNWVLRVPLVYGQGNFGSVDGDPPAAYRYTE 122 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 A++T+ AEL+L + +D VD +Y+ EP V P++FPNLL NGT+GIAVGMAT IP Sbjct: 123 AKLTRQAELLLDELGQDTVDSVASYDGTRHEPAVLPAQFPNLLVNGTAGIAVGMATQIPP 182 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E+ +A LIDNP+ ++ LL+ I GPDFP GG I+ R ++ + Y G G +V+ Sbjct: 183 HNLGEVLKACTLLIDNPDATVANLLDKIKGPDFPLGGKILADRAALRKIYEEGVGSIKVQ 242 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRI 311 A W E++ RG IVVT IPY V K L I +I +++P L +ES E +R+ Sbjct: 243 AEWKEEKIDRGVQ-IVVTSIPYGVNKGDLENTIGSIIDQRKLPQLTGQSNESNEKDGLRL 301 Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL-----SMGRVPQ-VMPLDGILKEWL 365 VL KN + DP+L+M ++ ++++ + NM L G P+ + L +L E+L Sbjct: 302 VLEIKNGT-DPNLVMAYLYKHTELQKTYSYNMTALVPAEDGKGMKPRDRLSLWDLLTEFL 360 Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR----F 421 R + RR ++++ + RR+ IL+G I + +D I +IR E KP + F Sbjct: 361 KFRLATVRRRFEYQLRQLRRRIHILEGFQIIFNALDRAIKMIR-ESSGKPDAAEKLKAAF 419 Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481 L + QV AIL+ +L + +LE +I EL + ++I+++L S K+ W I E+ Sbjct: 420 KLDDEQVGAILDSQLYKIAQLEIQKIIDELTEKKKQAKEIETILASEKKLWGVIKSELEA 479 Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATL---QQAMIEKEPITVVISNRGWIRSLKSHSV 538 + E F + RR+T +D+ L ++A I +E VV++ G I+ + Sbjct: 480 LIEKFPE-----RRKTRMA----SDEDVLEFNEEAYIARENTNVVLTKNGRIKRV-GRLA 529 Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNH 598 + +EGD++ + T D + + DG AYT+ + + G+GE I L Sbjct: 530 SVETTRVEEGDAVAAVVPGSTLDHVSFFADDGAAYTMRINEVPATAGYGEPITKFFKLAD 589 Query: 599 NQDIVTAFVYDSTCKLLVVSSKG-------------NAFIVE------ESEIIANTRKGK 639 +V A D + +KG N F++ SE +T+ G+ Sbjct: 590 GAKVVAAVTTDPRFTPADLPAKGDTPGGPFLVVATRNGFVLRLPLTAFRSE---STKVGR 646 Query: 640 TFLKVSSEEKMKLVVKVTG--DHVAVVGENRKLLIFSIDQIPEMS-RGKGV---RLQSYK 693 F+K+ +K+ ++V++ G + V + + F +DQ+ +S GKGV L+S Sbjct: 647 RFVKLEEGDKV-VMVRLAGAEEGVMLATSGGYVTHFPLDQVSILSGAGKGVIGIELESKD 705 Query: 694 D--GGI 697 D GG+ Sbjct: 706 DCLGGV 711 >gi|172059975|ref|YP_001807627.1| DNA gyrase subunit A [Burkholderia ambifaria MC40-6] gi|171992492|gb|ACB63411.1| DNA gyrase, A subunit [Burkholderia ambifaria MC40-6] Length = 867 Score = 386 bits (991), Expect = e-105, Method: Compositional matrix adjust. Identities = 234/620 (37%), Positives = 346/620 (55%), Gaps = 70/620 (11%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 SL + YL YA+S I RA+PD+RDG KPVHRR++ AM E+ D+ A+KKSARIV Sbjct: 11 TSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRAYKKSARIV 70 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGD +VYD++VR+AQ F RY LI GQGNFG+IDGD+AAA RYTE RM ++ Sbjct: 71 GDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLIDGQGNFGSIDGDNAAAMRYTEIRMAKI 130 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 +L +D++ VDF Y+ + +P V PS+ PNLL NG+SGIAVGMAT+IP HN+ E+ Sbjct: 131 GHELLADIDKETVDFEPNYDGNEMQPAVLPSRIPNLLINGSSGIAVGMATNIPPHNLNEV 190 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 +A L++N E +I++L+E I PDFPT GII + + YR GRG +RA E Sbjct: 191 VDACQHLLNNSEATIDELIEIIPAPDFPTAGIIY-GVAGVRDGYRTGRGRVVMRATTHFE 249 Query: 260 EVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318 E+ RG I+V E+PYQV K L+E+IAEL+ K++ + DIRDES + V+ R Sbjct: 250 EIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKR 309 Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378 P++++ +++ + ++ F +NM L G+ P+++ L IL+ +L+HRREVL RR+ + Sbjct: 310 GEVPEVVLNNLYKATQLQDTFGMNMVALVDGQ-PKLLNLKEILQCFLSHRREVLTRRTIY 368 Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---------KP-------VMVSR-- 420 ++ R +L+GL +A NIDE IAII+ P KP M++R Sbjct: 369 ELRKARERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMAKPWDSSLVREMLTRAE 428 Query: 421 ----------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELD 452 + L++ Q IL +RL+ L LE+ +I E Sbjct: 429 TENASAGGRSAYRPEGLNPAFGMQTDGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEYR 488 Query: 453 NLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ 512 ++A+ + +L ++ I E+ VK F G R + E++ + T + Sbjct: 489 EVMAQIADLLDILARPERITTMIGDELTSVKAEF------GDARRSRIELNATELNT--E 540 Query: 513 AMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRIL 564 +I + + V +S+ G++ R+ K A KE D ++ A+T D IL Sbjct: 541 DLITPQDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYIL 600 Query: 565 LLSTDG-----KAYTLPAGN 579 S G K Y +P G+ Sbjct: 601 CFSNRGRVYWVKVYEVPQGS 620 >gi|115350970|ref|YP_772809.1| DNA gyrase subunit A [Burkholderia ambifaria AMMD] gi|115280958|gb|ABI86475.1| DNA gyrase subunit A [Burkholderia ambifaria AMMD] Length = 867 Score = 386 bits (991), Expect = e-105, Method: Compositional matrix adjust. Identities = 234/620 (37%), Positives = 346/620 (55%), Gaps = 70/620 (11%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 SL + YL YA+S I RA+PD+RDG KPVHRR++ AM E+ D+ A+KKSARIV Sbjct: 11 TSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRAYKKSARIV 70 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGD +VYD++VR+AQ F RY LI GQGNFG+IDGD+AAA RYTE RM ++ Sbjct: 71 GDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLIDGQGNFGSIDGDNAAAMRYTEIRMAKI 130 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 +L +D++ VDF Y+ + +P V PS+ PNLL NG+SGIAVGMAT+IP HN+ E+ Sbjct: 131 GHELLADIDKETVDFEPNYDGNEMQPAVLPSRIPNLLINGSSGIAVGMATNIPPHNLNEV 190 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 +A L++N E +I++L+E I PDFPT GII + + YR GRG +RA E Sbjct: 191 VDACQHLLNNSEATIDELIEIIPAPDFPTAGIIY-GVAGVRDGYRTGRGRVVMRATTHFE 249 Query: 260 EVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318 E+ RG I+V E+PYQV K L+E+IAEL+ K++ + DIRDES + V+ R Sbjct: 250 EIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKR 309 Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378 P++++ +++ + ++ F +NM L G+ P+++ L IL+ +L+HRREVL RR+ + Sbjct: 310 GEVPEVVLNNLYKATQLQDTFGMNMVALVDGQ-PKLLNLKEILQCFLSHRREVLTRRTIY 368 Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---------KP-------VMVSR-- 420 ++ R +L+GL +A NIDE IAII+ P KP M++R Sbjct: 369 ELRKARERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMAKPWDSSLVREMLTRAE 428 Query: 421 ----------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELD 452 + L++ Q IL +RL+ L LE+ +I E Sbjct: 429 TENASAGGRSAYRPEGLNPAFGMQTDGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEYR 488 Query: 453 NLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ 512 ++A+ + +L ++ I E+ VK F G R + E++ + T + Sbjct: 489 EVMAQIADLLDILARPERITTMIGDELTSVKAEF------GDARRSRIELNATELNT--E 540 Query: 513 AMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRIL 564 +I + + V +S+ G++ R+ K A KE D ++ A+T D IL Sbjct: 541 DLITPQDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYIL 600 Query: 565 LLSTDG-----KAYTLPAGN 579 S G K Y +P G+ Sbjct: 601 CFSNRGRVYWVKVYEVPQGS 620 >gi|31044068|dbj|BAC76770.1| DNA gyrase A [Treponema denticola] Length = 611 Score = 386 bits (991), Expect = e-105, Method: Compositional matrix adjust. Identities = 223/593 (37%), Positives = 352/593 (59%), Gaps = 26/593 (4%) Query: 30 YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89 Y+ Y++S I RA+PD+RDG KPVHRRI+++M E GL +K A+IVG+V+G HPH Sbjct: 25 YIDYSMSVIVSRALPDVRDGLKPVHRRILYSMEEKGLRSSGPTRKCAKIVGDVLGSYHPH 84 Query: 90 GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDE 149 GD SVYD+LVRL Q F RYP+I QGNFG I GD AAYRYTEA+M ++AE +++ + + Sbjct: 85 GDASVYDALVRLGQDFSLRYPVIFPQGNFGTIGGDPPAAYRYTEAKMAKIAETMVEDIKK 144 Query: 150 DAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDN 209 + VDF +++ EP V P+KFP LLANG+SGIAVGMAT++P HN++EI +A A IDN Sbjct: 145 ETVDFIPNFDDSTKEPTVLPAKFPFLLANGSSGIAVGMATNMPPHNLREIADAVSAYIDN 204 Query: 210 PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIV 269 PEI I++L +Y+ GPDFPTGG+I R+ I ++++ GRG VR ++ +E +G IV Sbjct: 205 PEIEIDELCKYMKGPDFPTGGVIY-GRKGIKQAFKTGRGKILVRGKFTIEVDKKGKETIV 263 Query: 270 VTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE--DVRIVLFPKNRSLDPDLLME 327 TE+PYQV + L+ +I EL K I + ++ DE+++ +RIV+ K R +++ Sbjct: 264 FTEVPYQVNTTTLVSRIGELAREKIIDGIANVNDETSDRTGLRIVIELK-RGAITKVVLN 322 Query: 328 SIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRV 387 +F + +++ F + L GR P+ + L ++K ++ HR +V+ RR+ F ++ + R Sbjct: 323 QLFAKTALQSSFGVINLALVNGR-PETLNLKLLVKYFVEHRVDVVTRRTKFDLRKAEERA 381 Query: 388 EILKGLLIAYLNIDEIIAII---RNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEE 444 IL+ L++A NIDE+I II R+ K ++ RF + Q AI++++L+ L LE Sbjct: 382 HILEALIVAIDNIDEVIKIIRASRDTQTAKNSLMERFGFDDVQAQAIVDMQLKRLTSLEI 441 Query: 445 YQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSR 504 ++ EL L + LL ++ I E E+ E F G R T Sbjct: 442 EDLRKELQELQVLIAHLKDLLAHPEKILALIKEETNEIAEKF------GDERKTDIVADE 495 Query: 505 ADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD--------LSALHFKEGDSLKIALH 556 ++ ++ +I+KE + ++IS+ G+I+ + + + ++++ E D L Sbjct: 496 VEELNIED-LIKKEEMVILISHLGYIKRIPATAYKSQNRGGKGSNSVNLAEDDFLDQIFT 554 Query: 557 AHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAFV 607 A T D I+ ++ GKAY L + S G I+ L+ ++ +++I TA V Sbjct: 555 ASTHDYIMFITNAGKAYWLKVHEIQEASRTSRGSHIKSLLSVSSDEEI-TAVV 606 >gi|167748048|ref|ZP_02420175.1| hypothetical protein ANACAC_02786 [Anaerostipes caccae DSM 14662] gi|317472424|ref|ZP_07931749.1| DNA gyrase, subunit A [Anaerostipes sp. 3_2_56FAA] gi|167652528|gb|EDR96657.1| hypothetical protein ANACAC_02786 [Anaerostipes caccae DSM 14662] gi|316900144|gb|EFV22133.1| DNA gyrase, subunit A [Anaerostipes sp. 3_2_56FAA] Length = 828 Score = 386 bits (991), Expect = e-105, Method: Compositional matrix adjust. Identities = 249/709 (35%), Positives = 402/709 (56%), Gaps = 44/709 (6%) Query: 8 NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67 + NT+ ++ V V L+ +E Y+ YA+S I RA+PD+RDG KPV RRI++AM E+ Sbjct: 2 DENTIFDK-VHDVDLKQTMENSYIDYAMSVIAARALPDVRDGLKPVQRRILYAMIELNNG 60 Query: 68 FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAA 127 +K ARIVG+ +GK HPHGD S+Y +LV +AQ + RYPL+ G GNFG++DGD AA Sbjct: 61 PDKPHRKCARIVGDAMGKYHPHGDSSIYGALVNMAQEWSTRYPLVDGHGNFGSVDGDGAA 120 Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187 A RYTEAR+++++ +L + +D V+F ++E + EP V PS+FPNLL NGT GIAVGM Sbjct: 121 AMRYTEARLSKISMELLADIGKDTVNFIPNFDETEKEPQVLPSRFPNLLVNGTQGIAVGM 180 Query: 188 ATSIPSHNVQEICEAALALID-----NPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242 AT+IP HN+ E+ A + +ID N IE+LL+ + GPDFPTG I+ + I ++ Sbjct: 181 ATNIPPHNLTEVINAVVKIIDDQVERNQVTDIEELLDIVKGPDFPTGATIL-GKAGISQA 239 Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302 YR GRG +VRA +E + G IVVTE+PY V K+RLI+KIAEL+ K++ + +IR Sbjct: 240 YRTGRGKIKVRAVTDIEPMANGKQRIVVTELPYMVNKARLIQKIAELVKDKKVDGITEIR 299 Query: 303 DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362 DES + R + ++++ +F + M+ F + M L + P+++ L +L Sbjct: 300 DESDRTGMRICIELRRDANANVVLNRLFKHTQMQDTFGVIMLSL-VNNEPKILNLFDMLN 358 Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVS 419 +L H+++V+ RR+ + + + R IL+GLLIA NIDE+I IIR N + K ++ Sbjct: 359 YYLEHQKDVVTRRTKYELNKAEERAHILEGLLIAQDNIDEVIKIIRAAANITEAKTQLME 418 Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479 RF+LT+ Q AI+++RLR+L LE +++ E + L+A+ ++ ++L K I E+ Sbjct: 419 RFALTDAQAQAIVDMRLRALNGLERAKLEKEYNELMAKITELKAILADEKLLLGVIKDEL 478 Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR-----SLK 534 +++ + RRT+ D +++ +I +E + ++ G+I+ + K Sbjct: 479 VLIRDKYGDE-----RRTSIG--FDVDDISMED-LIPRENTIITMTKLGYIKRMTVDTFK 530 Query: 535 SHS---VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEA 589 S + + + + D ++ + I+ + G+ Y + A + S G A Sbjct: 531 SQNRGGKGIKGMQTIDEDYIEELFMTTSHHYIMFFTNMGRVYRMKAYEIPESSRTARGTA 590 Query: 590 IQLLIDLNHNQDIVTAFV----YDSTCKLLVVSSKGNAFIVEESEII--ANTRKGKTFLK 643 I LI L + I TA + Y L + + G +V++S I+ AN RK L Sbjct: 591 IVNLIQLQPEEKI-TAVIPINEYKEDHYLFMATKSG---VVKKSPIMEYANIRK-TGLLA 645 Query: 644 VSSEEKMKLV-VKVTGD--HVAVVGENRKLLIFSIDQIPEMSR-GKGVR 688 ++ +E +L+ VK T + V +V +N + + F + + R GVR Sbjct: 646 ITLKENDELIEVKFTDNDQDVFLVTKNGQCIRFHETDVRSIGRTAMGVR 694 >gi|148270781|ref|YP_001245241.1| DNA gyrase, A subunit [Thermotoga petrophila RKU-1] gi|147736325|gb|ABQ47665.1| DNA gyrase subunit A [Thermotoga petrophila RKU-1] Length = 804 Score = 386 bits (991), Expect = e-105, Method: Compositional matrix adjust. Identities = 229/610 (37%), Positives = 361/610 (59%), Gaps = 27/610 (4%) Query: 26 LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85 L E YL Y++S I RAIPD+RDG KPV RRI++ M E+GL + KKSARIVGEV+GK Sbjct: 14 LVESYLLYSMSVIVGRAIPDVRDGLKPVQRRILYGMYELGLKHNSPTKKSARIVGEVMGK 73 Query: 86 LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145 HPHGD VYD+LVR+AQPF RYPLI GQGNFG+ID D AA RYTEAR+T++AE +L+ Sbjct: 74 YHPHGDAPVYDALVRMAQPFTMRYPLIEGQGNFGSIDRDPPAAMRYTEARLTKLAEEMLE 133 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 ++++ V+ D ++ EP V PSK PNL+ NG SGIAVGMAT+IP HN+ E +A + Sbjct: 134 DIEKNTVNMVDNFDGTLKEPEVLPSKVPNLIINGASGIAVGMATNIPPHNLSETVDALIY 193 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265 LID+PE ++E+L+++I GPDFPTG ++V + E + + Y GRG VR + VE+ G+ Sbjct: 194 LIDHPEATVEELMQFIKGPDFPTGAVVVNASE-LKKVYEEGRGRIIVRGKVHVED-GKRV 251 Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVL-FPKNRSLDPD 323 +V+TEIPY V K+ LIE+IA++ + +IRDES +RIV+ PK+ S + Sbjct: 252 KRVVITEIPYGVSKAGLIEQIAKIAKDDESLPIRNIRDESDKRGMRIVIEIPKDTS--EE 309 Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383 +++ +++ + ++ F + M V+ + P++M L G+++ +L HR EV+ RR+ + + Sbjct: 310 VIINNLYKRTALQDYFNVQMLVIDKHKRPRLMNLKGLMEAFLEHRFEVIRRRARYEYEQY 369 Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAILNLRLRSLR 440 RR +++GLL A I ++ I+RN + K ++ +TE Q AIL++RL L Sbjct: 370 TRRAHVVEGLLKAARAIGVVVDIVRNSKDVESAKQSLMETLEITEEQAKAILDMRLSRLT 429 Query: 441 KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500 LE +++E +L+ + ++ +L + ++ EI + + ++ K RRT Sbjct: 430 SLEIENLQNEYSDLVRKISEVKEIL-----EKDEKVKEIMKEEFLYLKQQYGDPRRT--- 481 Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLK 552 E++ ++ +I +E + + +S+ G++ RS K ++ E D ++ Sbjct: 482 EITDQSIQYNEEELIVEEDVVITLSHNGYLKSTPLNSYRSQKRGGKGITVSKLTEDDEVE 541 Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNL-LSGRG-HGEAIQLLIDLNHNQDIVTAFVYDS 610 + A T L ++ G+AY L L +GR G I ++L + IV + Sbjct: 542 FVVVAKNTASTLFITNLGRAYVLKNYQLETTGRNTRGRHITAFLNLEDTEKIVALASLNG 601 Query: 611 TCKLLVVSSK 620 LV+ +K Sbjct: 602 DGNDLVIVTK 611 >gi|296270352|ref|YP_003652984.1| DNA topoisomerase [Thermobispora bispora DSM 43833] gi|296093139|gb|ADG89091.1| DNA topoisomerase (ATP-hydrolyzing) [Thermobispora bispora DSM 43833] Length = 841 Score = 386 bits (991), Expect = e-105, Method: Compositional matrix adjust. Identities = 212/535 (39%), Positives = 336/535 (62%), Gaps = 18/535 (3%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 +E + + + + +L YA S I +RA+PD RDG KPV RRI+++MSEMGL Sbjct: 16 QERIVDIDVAAEMRTSFLEYAYSVIYQRALPDARDGLKPVQRRILYSMSEMGLRPDRGHV 75 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KS+R+VGEV+GKLHPHGD ++YD+LVR+AQPF R PL+ G GNFG+ D D+ AA RYTE Sbjct: 76 KSSRVVGEVMGKLHPHGDAAIYDALVRMAQPFSMRLPLVDGHGNFGSPD-DAPAAMRYTE 134 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 AR+ A L++Q +DE+ VDFR Y+ +++EP V P+ FPNLL NG SGIAVGMAT+IP Sbjct: 135 ARLAPAAMLMVQSIDEETVDFRPNYDGQETEPAVLPAAFPNLLVNGASGIAVGMATNIPP 194 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E+ AA L+ P+ ++++L++++ GPD PTGG+I+ ++I E+Y GRG FR+R Sbjct: 195 HNLAEVIGAARHLLKKPDATLDELMQFVPGPDLPTGGLII-GLDAIREAYETGRGTFRMR 253 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD--ESAEDVRI 311 AR +E V IVVTE+P+ V R++ KI EL+ AK++ + D++D + + +R+ Sbjct: 254 ARATIENVTARRKAIVVTELPFNVGPERVVAKIKELVQAKKLVGIADLKDLTDRHKGLRL 313 Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371 V+ K +P+ ++E ++ L+ ME F +N L G+ P+ + L +L ++ HR EV Sbjct: 314 VIEVKT-GFNPEAVLEELYRLTPMEETFGINSVALVDGQ-PRTLGLRDLLAVYVNHRLEV 371 Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQV 428 + RRS++R + + R+ +++GL+ A LNIDE+I +IR D P + ++ F L+E Q Sbjct: 372 VRRRSAYRRRKREERLHLVEGLITALLNIDEVIQVIRTSDDPAHARSRLMETFGLSEAQA 431 Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488 IL+ LR L + ++ +++ E + L AE +++++L S + ++ E+ EV + + Sbjct: 432 GYILDTPLRRLTRYDKLELEREKEGLQAEIAELNAILGSEDRLRRVVSKELAEVAKKYGT 491 Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSAL 543 RRT + + A T + +P V++S+ G I + + D S L Sbjct: 492 P-----RRTQLLDSAEAALKTAIPLEVADDPCLVLLSSTGLI----ARTADASPL 537 >gi|253581065|ref|ZP_04858325.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251847601|gb|EES75571.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 857 Score = 386 bits (991), Expect = e-105, Method: Compositional matrix adjust. Identities = 247/712 (34%), Positives = 407/712 (57%), Gaps = 45/712 (6%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 + V V L +++ Y+ YA+S I RA+PD+RDG KPV RR++++M E+ +K Sbjct: 7 DKVHEVDLEKTMKDSYIDYAMSVIASRALPDVRDGLKPVQRRVLYSMIELNNGPDKPHRK 66 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 ARIVG+ +GK HPHGD S+Y +LV +AQ + RYPL+ G GNFG++DGD AAA RYTEA Sbjct: 67 CARIVGDTMGKYHPHGDSSIYGALVNMAQEWSTRYPLVDGHGNFGSVDGDGAAAMRYTEA 126 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 R+++++ +L +++D VDF+ ++E + EPVV PS++PNLL NGTSGIAVGMAT+IP H Sbjct: 127 RLSKISMEMLADINKDTVDFQPNFDETEREPVVLPSRYPNLLVNGTSGIAVGMATNIPPH 186 Query: 195 NVQEICEAALALIDN-----PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249 N++E+ +A + +IDN E ++E++L+ + GPDFPTG +I+ R I E+YR GRG Sbjct: 187 NLREVVDAVVKIIDNIIEEQRETTMEEILDIVKGPDFPTGAMIL-GRRGIEEAYRTGRGK 245 Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309 RVRA +E + G I+VTE+PY V K+RLI KIAEL+ K+I + D+ D S+ + Sbjct: 246 IRVRAVTNIETLPNGKSRIIVTELPYLVNKARLISKIAELVRDKKIDGITDLNDHSSREG 305 Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL--SMGRV-PQVMPLDGILKEWLA 366 + + + ++++ ++ + ++ F +NM L + G + P+V+ L +L+ +LA Sbjct: 306 MRICIDLRKDANANVVLNLLYKHTQLQDTFGVNMLSLIPNNGSLEPKVLNLKQMLEYYLA 365 Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSL 423 H+ +V+ RR+ + + R IL+GLL A NIDE+I IIR N K ++ RF L Sbjct: 366 HQEDVVTRRTKYDLNKARERAHILEGLLKALDNIDEVIRIIRASQNVQIAKQELMDRFEL 425 Query: 424 TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483 T+ Q AI+++RLR+L LE ++++E +L+ + K +++L + + IRE Sbjct: 426 TDVQAQAIVDMRLRALTGLEREKLEAEYADLMEKIRKYEAIL----ADRSLLLRVIRE-- 479 Query: 484 EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKS 535 EI + + G R T D +T + +I +E + ++ G+I RS Sbjct: 480 EILAIAEKYGDDRKTSIGYDVYDIST--EDLIPRENTVITMTKLGYIKRMTVDNFRSQNR 537 Query: 536 HSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEAIQLL 593 + + E D ++ L T ++ + G+ Y L A + +GR G AI L Sbjct: 538 GGRGIKGMQTLEDDYIEELLMTTTHHYLMFFTNTGRVYRLKAYEIPEAGRTARGTAIINL 597 Query: 594 IDLNHNQDIVTAFV----YDSTCKLLVVSSKGNAFIVEESEI--IANTRK-GKTFLKVSS 646 + L + +TA + ++ L++ + G +V+++ I AN RK G + + Sbjct: 598 LQLMPGE-CITAVIPLRKFEDGHYLMMATKNG---LVKKTPIKEYANVRKNGLAAITLRD 653 Query: 647 EEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGK---GVRLQSYKDG 695 ++++ + VK+T D ++ + + + S G+ GVR + DG Sbjct: 654 DDEL-IEVKLTDDKKDIILVTKDGMCIRFKETDVRSTGRTSMGVRGMNIDDG 704 >gi|239930169|ref|ZP_04687122.1| DNA gyrase subunit A [Streptomyces ghanaensis ATCC 14672] gi|291438511|ref|ZP_06577901.1| DNA gyrase [Streptomyces ghanaensis ATCC 14672] gi|291341406|gb|EFE68362.1| DNA gyrase [Streptomyces ghanaensis ATCC 14672] Length = 864 Score = 386 bits (991), Expect = e-105, Method: Compositional matrix adjust. Identities = 225/585 (38%), Positives = 342/585 (58%), Gaps = 40/585 (6%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 V+ V L ++ YL YA+S I RA+PD+RDG KPVHRR+++AM + G F K A Sbjct: 20 VEPVGLETEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMYDGGYRPERGFYKCA 79 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+V+G HPHGD S+YD+LVRLAQP+ R PL+ GNFG+ D AAA RYTE +M Sbjct: 80 RVVGDVMGNYHPHGDSSIYDALVRLAQPWAMRMPLVDSNGNFGSPGNDPAAAMRYTECKM 139 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 ++ +++ +DE+ VDF+D Y+ EP V P++FPNLL NG++GIAVGMAT+IP H + Sbjct: 140 APLSMEMVRDIDEETVDFKDNYDGRSQEPTVLPARFPNLLINGSAGIAVGMATNIPPHTL 199 Query: 197 QEICEAALALIDNPEISIEKLLEYII----GPDFPTGGIIVESRESIVESYRLGRGGFRV 252 +E+ A ++NPE S E+LL+ +I GPDFPTG ++V R+ I E+YR GRG + Sbjct: 200 REVAAGAQWYLENPEASHEELLDALIERIKGPDFPTGALVV-GRKGIEEAYRTGRGSITM 258 Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV--R 310 RA VEE+ + C+VVTE+PYQV L +KIA+L+ ++ + D+RDE++ R Sbjct: 259 RAVVAVEEI-QNRQCLVVTELPYQVNPDNLAQKIADLVKDGKVGGIADVRDETSSRTGQR 317 Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370 +V+ K R +++ +++ +D++T F NM L G VP+ + LD ++ W+AH+ E Sbjct: 318 LVIVLK-RDAVAKVVLNNLYKHTDLQTNFGANMLALVDG-VPRTLSLDAFIRHWVAHQIE 375 Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR------FSLT 424 V+ RR+ FR++ + R IL+GLL A IDE+IA+IR D V ++R ++ Sbjct: 376 VIVRRTRFRLRKAEERAHILRGLLKALDAIDEVIALIRRSDT---VEIARGGLRDLLAID 432 Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484 + Q +AIL ++LR L LE +I E D L A+ ++ + +L S +Q ++ E+ + E Sbjct: 433 DIQANAILEMQLRRLAALERQKIVQEHDELQAKIDEYNGILASPVRQRGIVSEELAALVE 492 Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSH 536 + G R T D + + +I +E I V ++ G+I R+ K Sbjct: 493 KY------GDDRKTKLIPYEGDMSI--EDLIAEEDIVVTVTRGGYIKRTRTEDYRAQKRG 544 Query: 537 SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLP 576 + KE D + + T +L + G KAY LP Sbjct: 545 GKGVRGTKLKEDDIVDHFFVSTTHHWLLFFTNKGRVYRAKAYELP 589 >gi|15894906|ref|NP_348255.1| DNA topoisomerase IV subunit A [Clostridium acetobutylicum ATCC 824] gi|15024586|gb|AAK79595.1|AE007672_2 DNA gyrase A subunit [Clostridium acetobutylicum ATCC 824] gi|325509043|gb|ADZ20679.1| DNA topoisomerase IV subunit A [Clostridium acetobutylicum EA 2018] Length = 954 Score = 385 bits (990), Expect = e-104, Method: Compositional matrix adjust. Identities = 218/601 (36%), Positives = 354/601 (58%), Gaps = 31/601 (5%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 + N+ + L A+ E YL YA+ ++RA+PD+RDG KPVHRRII+ + + Sbjct: 10 DSNIIKIPLEEAMPENYLPYAVEVARDRALPDVRDGLKPVHRRIIYGSYMLKAFPDKPYY 69 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSARIVG+++GK HPHGD SVY+S+V LAQ F R+PLI G GN+G++DGDSAAA RYTE Sbjct: 70 KSARIVGDILGKYHPHGDSSVYESMVILAQNFTTRHPLIDGHGNWGSVDGDSAAAMRYTE 129 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 AR+T +A ++ +D+D VD D Y+ + EP V P+ +PNLL NG GIAVG++T+IP Sbjct: 130 ARLTPIALEMINDIDKDVVDMVDNYSGSEKEPSVLPAAYPNLLVNGAFGIAVGLSTNIPP 189 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN++E+ +A L IDN ++++ +L+E + GPD PTGGII+ + S++ +Y G G +R Sbjct: 190 HNLREVIDAVLKYIDNKDVTVNELMECVKGPDLPTGGIII-GKNSLIAAYETGEGKVTLR 248 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELII----AKRIPLLEDIRDESAEDV 309 AR +E + G IV++E PY+ K+++++ I+E+ AK + + DIRDES D Sbjct: 249 ARTKIERLENGRLAIVISEFPYRRNKAKILQTISEMTADKKHAKILESISDIRDES--DR 306 Query: 310 R----IVLFPKNRSLDP-DLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364 R ++ F K+ D + +++ +F ++++ NM L+ G+ P+ M L I+ + Sbjct: 307 RGIRGVIEFKKSSDEDTVNKILKYLFKKTELQCNINFNMVALADGK-PETMGLKTIIGHY 365 Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRF 421 + HR++++ RR+ + A +R I++G + A +DEII+ IR K +V++F Sbjct: 366 VNHRKDIVTRRTKHNLNAARKRFNIVEGFIKAIDIMDEIISTIRASKSKKDSENNLVAKF 425 Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481 Q AI+ L L L LE K E D L +K++ +L+ K+ + E++E Sbjct: 426 GFNNEQATAIVELMLYKLTGLEIETFKKEYDELSKLIKKLEKILSDEKELLRVVKNELKE 485 Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS------LKS 535 V++ + + RRT+ E K +++ + E I V +SN G+I+S L+S Sbjct: 486 VEKKYGED-----RRTSIVEDDSEAKIDVEEFTV-VEDIVVTMSNDGYIKSVPKKTYLRS 539 Query: 536 HSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLL 593 +S D+S + ++EGD + + +T +L+ + +G Y L ++ + GE I L Sbjct: 540 NS-DVSDIEYREGDFNRFLIETNTAHNLLMFTDEGNMYKLRGNSIPEYKWKEKGEKIDNL 598 Query: 594 I 594 I Sbjct: 599 I 599 >gi|37522651|ref|NP_926028.1| DNA gyrase subunit A [Gloeobacter violaceus PCC 7421] gi|35213652|dbj|BAC91023.1| DNA gyrase subunit A [Gloeobacter violaceus PCC 7421] Length = 840 Score = 385 bits (990), Expect = e-104, Method: Compositional matrix adjust. Identities = 224/581 (38%), Positives = 341/581 (58%), Gaps = 31/581 (5%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 +LR ++ YL YA+S I RA+PD RDG KPVHRRI+ AM E+GL ++K AR+V Sbjct: 7 TNLRNEMQRSYLEYAMSVIVGRALPDARDGLKPVHRRILFAMHELGLGPDRPYRKCARVV 66 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+V+GK HPHGD +VYD+LVRLAQ F RY LI G GNFG++D D AA RYTE R+T + Sbjct: 67 GDVLGKYHPHGDSAVYDALVRLAQDFSTRYLLIDGHGNFGSVDNDPPAAMRYTECRLTPL 126 Query: 140 A-ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198 + +L ++ + VDF D ++ EP V PS+ P LL NG++GIAVGMAT+IP H + E Sbjct: 127 TRDTLLADLEAETVDFSDNFDGSQQEPTVLPSRLPQLLLNGSAGIAVGMATNIPPHQLGE 186 Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258 + + AL+ NP + I +L+ YI GPDFPTGG I+ + I E+Y GRG +R + Sbjct: 187 LVDGVTALLANPNLGIPELMRYIPGPDFPTGGTIL-GQSGIREAYTTGRGSITMRGVAAI 245 Query: 259 EEV---GRGSW-CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314 E + GR IV+TE+PYQV K+ LIEKIAEL+ KRI + DIRDES D + Sbjct: 246 ETIQVRGRPDREAIVITELPYQVCKAALIEKIAELVNDKRIDGISDIRDESDRDGLRAVI 305 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 R P +++ ++F L+ ++T F NM L G P+++ L L+ ++ R EV+ R Sbjct: 306 ELKRDAYPRVVLNNLFKLTPLQTNFGCNMLALVNGE-PRLLNLKEFLQTFIDFRAEVITR 364 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAI 431 R+ + ++ R IL G+L+A N++ +IA+IR D + +V+RF L+E Q +AI Sbjct: 365 RTHYELRKARERDHILMGMLVALANLESVIALIRAADDTASARAELVNRFELSEAQAEAI 424 Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491 L ++LR L +E +I++E L+A+ + +L +++ +QI IR+ E+ + Sbjct: 425 LQMQLRRLTGMEAGRIEAEHRELIAKIADLSDVLER-RERIDQI---IRD--ELLTAKQR 478 Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL--------SAL 543 L R T E +A+ +I + + V+++ +G+I+ L + D S Sbjct: 479 LNDPRRTIIE--KAEGEIDDADLIANQEMVVLVTEQGYIKRLPVDTFDRQRRATRGKSGA 536 Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGN 579 +E D+++ + D +L + G + Y +PAG+ Sbjct: 537 RMREDDAVEHFITCCNHDTVLFFTNRGVVYALRGYQIPAGS 577 >gi|326387736|ref|ZP_08209342.1| DNA gyrase subunit A [Novosphingobium nitrogenifigens DSM 19370] gi|326207782|gb|EGD58593.1| DNA gyrase subunit A [Novosphingobium nitrogenifigens DSM 19370] Length = 916 Score = 385 bits (990), Expect = e-104, Method: Compositional matrix adjust. Identities = 259/740 (35%), Positives = 384/740 (51%), Gaps = 76/740 (10%) Query: 26 LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85 ++ YL YA+S I RA+PD+RDG KPVHRRI+ E G G ++KSARIVG+ +GK Sbjct: 28 MKSSYLDYAMSVIVSRALPDVRDGLKPVHRRILWTSHENGFTAGKPYRKSARIVGDAMGK 87 Query: 86 LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145 HPHGD ++YD+L R+ Q + R PLI GQGNFG++D D A+ RYTEAR+ +VA+ +L Sbjct: 88 YHPHGDAAIYDALARMTQDWSMRLPLIDGQGNFGSMDPDPPASMRYTEARLAKVADALLA 147 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 +++D VDF+ Y+ + EP V P++FPNLL NG GIAVGMAT+IP HN+ E+ + LA Sbjct: 148 DIEKDTVDFQPNYDGAEQEPQVLPARFPNLLVNGAGGIAVGMATNIPPHNLGEVIDGCLA 207 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265 +DNP I +E+L+ I GPDFPT +I+ + ++Y GRG +RAR VEE RG Sbjct: 208 YMDNPMIELEELIRIIPGPDFPTAPLILGT-AGARKAYTEGRGSIIMRARHTVEEGRRGD 266 Query: 266 W--CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLFPKNRSLDP 322 IV+T IPYQV KS L+EKIAE KRI + DIRDES E VR+V+ K R P Sbjct: 267 SRRSIVLTSIPYQVGKSNLVEKIAEAAKDKRIEGISDIRDESNREGVRVVIDLK-RDATP 325 Query: 323 DLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQA 382 D+++ ++ + ++ FP NM + GR P+++ L I++ ++ R EV+ RR+ F + Sbjct: 326 DVVLNQLWRNTPAQSNFPANMLAIRGGR-PELLGLKDIIESFVRFREEVITRRTKFELMK 384 Query: 383 IDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR------------------- 420 R IL GL+IA N+DE++ IIR P + +++R Sbjct: 385 ARDRAHILLGLVIAVTNLDEVVKIIRGSANPALARERLLAREWPIGEIAPYIRLVEAIED 444 Query: 421 --------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQW 472 + L+E QV AIL+LRL L L +I EL+ L + S+L + + Sbjct: 445 DALTGTETYRLSEIQVRAILDLRLHRLTALGRDEIGEELEGLAKAIAEFLSILADRVKLY 504 Query: 473 NQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI-- 530 + E+ VK ++ E++ + +IE++ + V I+ G+I Sbjct: 505 GVMREELIAVKAAYATP--------RLSEITAPADGIDDEDLIERDDMVVTITLDGYIKR 556 Query: 531 ------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY-----TLPAG- 578 R+ S + K+ D++ A T +L ST GK Y LP G Sbjct: 557 TPLSTFRAQNRGGKGRSGMATKDEDAIATMFVASTHTPVLFFSTAGKVYRQKVWRLPEGG 616 Query: 579 ---------NLLSGRGHGEAIQLLIDLNHNQ-DIVTAFVYDSTCKLLVVSSKGNAFIVEE 628 NLL GE I ++ L ++ + V +T K V + +AF Sbjct: 617 AVTRGRPVVNLLPSLDQGETIAAVLALPEDEAEWGKLHVMFATAKGNVRRNAMDAF---- 672 Query: 629 SEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR--GKG 686 + I +N + F + + + + + GD V + K + F D + E G Sbjct: 673 ANIPSNGKFAMKFEEGDEDHLIGVALLSEGDDVLLASRQGKAIRFPADDVREFQSRTSTG 732 Query: 687 VRLQSYKDGGISDVICFKIC 706 VR + KDG +VI I Sbjct: 733 VRGMALKDG--DEVISLSIL 750 >gi|29828965|ref|NP_823599.1| DNA topoisomerase IV subunit A [Streptomyces avermitilis MA-4680] gi|29606070|dbj|BAC70134.1| putative a subunit of topoisomerase IV [Streptomyces avermitilis MA-4680] Length = 818 Score = 385 bits (990), Expect = e-104, Method: Compositional matrix adjust. Identities = 215/523 (41%), Positives = 323/523 (61%), Gaps = 15/523 (2%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 EE + + + ++ +L YA S I RA+PD RDG KPVHRRI++ M+EMGL + Sbjct: 15 EERILDIDVVDEMQGSFLEYAYSVIYSRALPDARDGLKPVHRRIVYQMNEMGLRPDRGYV 74 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYT 132 K AR+VGEV+GKLHPHGD S+YD+LVRLAQPF R PL+ G GNFG++ + D AA RYT Sbjct: 75 KCARVVGEVMGKLHPHGDASIYDALVRLAQPFSMRLPLVDGHGNFGSLGNDDPPAAMRYT 134 Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192 E RM L+ + +DED VDF Y+ ++ EPV P+ FPNLL NG+SGIAVGMAT++P Sbjct: 135 ECRMADATSLMTESIDEDTVDFSPNYDGQEQEPVALPAAFPNLLVNGSSGIAVGMATNMP 194 Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252 HN+ E+ AA LI P +E L++++ GPD PTGG IV I ++Y GRG F++ Sbjct: 195 PHNLGEVISAARHLIRYPGADLETLMKHVPGPDLPTGGRIV-GLTGIRDAYESGRGTFKI 253 Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD--ESAEDVR 310 RA VE+V +VVTE+P+ V ++I KI +L+ +K++ + D++D + A +R Sbjct: 254 RATVSVEDVTARRKGLVVTELPFTVGPEKVIAKIKDLVGSKKLQGIADVKDLTDRAHGLR 313 Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370 +V+ KN P+ ++E ++ L+ ME F +N L G+ P + L +L+ +L HR E Sbjct: 314 LVIEIKN-GFVPEAVLEQLYKLTPMEESFGINNVALVDGQ-PLTLGLKELLEVYLDHRFE 371 Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQ 427 V+ RRS FR R+ +++GLL+A L+IDE+I +IR+ D + K ++ RFSL+E Q Sbjct: 372 VVRRRSEFRRGKKRDRLHLVEGLLVALLDIDEVIRLIRSSDNSAQAKERLIERFSLSEVQ 431 Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487 IL+ LR L + + +++SE D L E +++ +L S + ++ E+ V + F Sbjct: 432 TQYILDTPLRRLTRFDRIELESERDRLNGEIDELTGILESDAELRKLVSGELAAVAKKF- 490 Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI 530 TD RRT E + + AT+ + +P V++S+ G + Sbjct: 491 -GTD---RRTVLLESAGSTAATV-PLQVADDPCRVLLSSTGLL 528 >gi|168180822|ref|ZP_02615486.1| DNA topoisomerase, GyrA/ParC subunit family [Clostridium botulinum NCTC 2916] gi|226950183|ref|YP_002805274.1| DNA topoisomerase IV subunit A [Clostridium botulinum A2 str. Kyoto] gi|182668336|gb|EDT80315.1| DNA topoisomerase, GyrA/ParC subunit family [Clostridium botulinum NCTC 2916] gi|226841361|gb|ACO84027.1| DNA topoisomerase, GyrA/ParC subunit family [Clostridium botulinum A2 str. Kyoto] Length = 956 Score = 385 bits (990), Expect = e-104, Method: Compositional matrix adjust. Identities = 232/661 (35%), Positives = 386/661 (58%), Gaps = 41/661 (6%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 + N+ + L A+ E YL YA+ KERA+PD+RDG KPV RRI++ + + Sbjct: 10 DNNIISFPLEEAMPENYLPYAVEVSKERALPDVRDGLKPVQRRIVYGSYMLKAFPDKPYY 69 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSARIVG+++GK HPHGD SVYD++V LAQ F R PLI G GN+G+ DGDSAAA RYTE Sbjct: 70 KSARIVGDILGKYHPHGDSSVYDAMVILAQDFTTRMPLIDGHGNWGSQDGDSAAAMRYTE 129 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 AR+T +A +++ +D+D V+ D Y+ + EP V P+K+PN+L NG GIAVG+AT+IP Sbjct: 130 ARLTPIAMEMIRDIDKDVVNMVDNYSNSEKEPEVLPAKYPNILVNGAFGIAVGLATNIPP 189 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E+ + LA ID EI+ ++LL YI GPD PTGG+I+ ++S++ +Y G G +R Sbjct: 190 HNLVEVIDGTLAYIDKNEITTKELLNYIKGPDLPTGGVII-GKKSMLSAYETGEGRVTLR 248 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR----IPLLEDIRDESAED- 308 A+ +E++ G IV+TE P++ K++L++ I+E+ K+ + + DIRDES + Sbjct: 249 AKTTIEKLENGRLSIVITEFPFRKNKAKLLQFISEMTADKKHSKALENITDIRDESDRNG 308 Query: 309 VRIVL-FPKNRSLD-PDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366 +R V+ F K + D + ++ ++ +D+++ NM L+ G+ P+ + L +LK ++ Sbjct: 309 IRAVIEFKKIATEDIVEKTLKYLYKKTDLQSNISFNMVALADGK-PKTLGLKSMLKYYVE 367 Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSL 423 H++EV+ RR+ ++ ++R I++G + A +DEII IR K ++ +FS Sbjct: 368 HQKEVITRRTKRELEIAEKRFHIVEGFIKAIGIMDEIIKTIRESKSKKNARENLIEKFSF 427 Query: 424 TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483 T+ Q +AIL L L L LE + E L K+ +L S K+ I E+ EVK Sbjct: 428 TDIQAEAILELMLYKLTGLEVVAFEKEYKELEKLINKLTKILKSEKELLKVIKKELIEVK 487 Query: 484 EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSH---SV 538 E ++ +RRT E K +++ ++E E + + +SN G+ + +LKS+ S Sbjct: 488 ETYN-----DKRRTAIIEDDEKAKIDVEEIIVE-EDVVLTLSNEGFTKRIALKSYNRSSA 541 Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL-----L 593 ++ + ++EGD + + +T D + L++ +G Y + N+ + + ++L Sbjct: 542 NVEDIEYREGDFNRFLIQCNTKDTLCLVTKEGNMYQIKVINIPEFKWKEKGVKLDEIIKT 601 Query: 594 IDLNHNQDIVTAF-VYDSTCK--LLVVSSKG-------NAFIVEESEIIA-NTRKGKTFL 642 IDL ++ I+ AF + D T + +L ++ G + F ++I+A +KG++ + Sbjct: 602 IDL--SETIIEAFSIEDFTAQKDMLFITDSGYIKKTTLDKFNTNYTKIMALKLKKGESLV 659 Query: 643 K 643 K Sbjct: 660 K 660 >gi|313885860|ref|ZP_07819601.1| DNA gyrase, A subunit [Porphyromonas asaccharolytica PR426713P-I] gi|332300696|ref|YP_004442617.1| DNA gyrase, A subunit [Porphyromonas asaccharolytica DSM 20707] gi|312924689|gb|EFR35457.1| DNA gyrase, A subunit [Porphyromonas asaccharolytica PR426713P-I] gi|332177759|gb|AEE13449.1| DNA gyrase, A subunit [Porphyromonas asaccharolytica DSM 20707] Length = 860 Score = 385 bits (990), Expect = e-104, Method: Compositional matrix adjust. Identities = 248/706 (35%), Positives = 405/706 (57%), Gaps = 55/706 (7%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 V + ++ Y+ Y++S I RA+PD+RDG KPVHRR++++M+E G + +K AR V Sbjct: 11 VDIEDEMKTSYIDYSMSVIVSRALPDVRDGLKPVHRRVLYSMNESGNTYNNPTRKCARAV 70 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+++GK HPHGD SVY++LVRLAQ + RYPL+ GQGNFG+IDGDS AA RYTE+R+ Q Sbjct: 71 GDILGKYHPHGDSSVYNTLVRLAQGWNMRYPLVQGQGNFGSIDGDSPAAMRYTESRLNQF 130 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A+ +L+ +D + VDF+D ++ + EP V P + PNLL NG +GIAVGMAT++ HN+ E Sbjct: 131 AQEMLRDIDMETVDFQDNFDGDFKEPTVLPCRIPNLLINGAAGIAVGMATNMAPHNLTET 190 Query: 200 CEAALALID-NPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258 A +A ID EI++++L++Y+ PDFPTGG+I E + E++R GRG +R + + Sbjct: 191 LNACIAYIDARGEITVDELMQYVKAPDFPTGGVIY-GYEGVKEAFRTGRGRIVIRGKADI 249 Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLFPKN 317 EE G IV+ EIPYQV+KS ++ KIA+L+ K+I + DI DES+ + +RIV+ K Sbjct: 250 EEY-HGHERIVIREIPYQVRKSDMVAKIAQLVNEKKIDGISDISDESSNKGIRIVIDIK- 307 Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377 + + +++ ++ SD+E+ F +N L GR P+++ L ++ ++ HR +V+ RR+ Sbjct: 308 KDANAGVVLNYLYKYSDLESYFSVNNIALVHGR-PRLLNLKDLIGHFVDHRHDVVTRRAQ 366 Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQVDAILNL 434 + ++ R+ IL+GL+IA +IDE+I IIR+ ++ + M + F+L+E Q AI+++ Sbjct: 367 YELRKAQERIHILEGLIIAVDHIDEVIRIIRSSEETREAMNRLMEAFNLSELQARAIVDM 426 Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSL---LNSGKQQWNQIACEIREVKEIFSKSTD 491 RLR L KL+ +++ E + L KE+ID L L+ + I E RE+ + + Sbjct: 427 RLRQLTKLDIDKLQHEYNEL---KERIDYLNLFLSDINMRMELIQEECREIIDKYGDE-- 481 Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSAL 543 RR+ E+ A + + E + + IS+ G+I R+ V + Sbjct: 482 ---RRS---EIVYASEDLNPEDFYADEDMVITISHLGYIKRTPLSEFRTQTRGGVGVKGA 535 Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTL-----PAGNLLSGRGHGEAIQLLIDLNH 598 ++ D ++ A ++L + G+ Y L P G S G IQ L+DL+ Sbjct: 536 DSRDEDFVEYIYSATMHATMMLFTATGRVYWLRVFEIPEG---SKSSKGRHIQNLLDLDE 592 Query: 599 NQDIVTAF--VYDSTCKLLVVSSKGNAFIVEESEI-------IANTRK-GKTFLKVSSEE 648 ++ VTAF + D T V++ F E+ I AN RK G + + ++ Sbjct: 593 -ENRVTAFLRIKDLTTDKEFVNTHYLVFATEQGLIKKTLLAHYANPRKTGVRAINLRGDD 651 Query: 649 KMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRG----KGVRL 689 ++ V G+ + + N + + F+ ++ M R +G+RL Sbjct: 652 QVVSVALSNGNCEIFLANRNGRCVRFNEQEVRPMGRTATGVRGIRL 697 >gi|73542263|ref|YP_296783.1| DNA gyrase subunit A [Ralstonia eutropha JMP134] gi|72119676|gb|AAZ61939.1| DNA gyrase subunit A [Ralstonia eutropha JMP134] Length = 883 Score = 385 bits (990), Expect = e-104, Method: Compositional matrix adjust. Identities = 227/610 (37%), Positives = 350/610 (57%), Gaps = 65/610 (10%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 VSL + YL YA+S I RA+PD+RDG KPVHRR+++AM E+ D+ A+KKSARIV Sbjct: 11 VSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNRAYKKSARIV 70 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGD +VYD++VR+AQ F RY L+ GQGNFG++DGD+AAA RYTE R++++ Sbjct: 71 GDVIGKYHPHGDTAVYDTIVRMAQNFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRLSKI 130 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A +L +D++ VDF Y+ + EP + P++ PNLL NG+SGIAVGMAT+IP HN+ EI Sbjct: 131 AHEMLHDIDKETVDFDPNYDGSEKEPAILPARIPNLLINGSSGIAVGMATNIPPHNLNEI 190 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 + L L+ NP+ ++++L+E I PDFPT GII + + E YR GRG +RAR E Sbjct: 191 VDGCLHLLRNPQATVDELIELIPAPDFPTAGIIY-GIQGVREGYRTGRGRVVMRARTHFE 249 Query: 260 EVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318 ++ RG I+V E+PYQV K L+E+IAEL+ K++ + DIRDES + V+ R Sbjct: 250 DIDRGQRQAIIVDELPYQVNKRTLLERIAELVTEKKVEGISDIRDESDKSGMRVVIELKR 309 Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378 + P++++ +++ + ++ F +NM L + R P+++ L +L+ +L HRREV+ RR+ F Sbjct: 310 NEVPEVVLNNLYKNTQLQDTFGMNMVAL-VDRQPRLLNLKQMLEYFLQHRREVVTRRTVF 368 Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV-----------------MVSR- 420 ++ R +L+GL +A NIDE IAII+ P P+ M++R Sbjct: 369 ELRKARERGHVLEGLAVALANIDEFIAIIKAAPTP-PIAKQELMAKSWDSGLVREMLARA 427 Query: 421 ---------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453 + L+++Q IL +RL+ L LE+ +I E + Sbjct: 428 EADTPGGRASYRPDGLPAMFGMQGDGLYRLSDSQAQEILQMRLQRLTGLEQDKIVQEYRD 487 Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513 ++A + +L ++ I+ E+ ++ F G R + E++ + T + Sbjct: 488 VMAIIADLLDILARPERITTIISDELTAIRAEF------GDERRSQIELNATELDT--ED 539 Query: 514 MIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565 +I + + V +S+ G++ R+ K A KE D + A+T D IL Sbjct: 540 LITPQDMVVTLSHSGYMKSQPISEYRAQKRGGRGKLATATKEDDWIDTLFVANTHDYILC 599 Query: 566 LSTDGKAYTL 575 S G+ Y L Sbjct: 600 FSNRGRLYWL 609 >gi|227889152|ref|ZP_04006957.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus johnsonii ATCC 33200] gi|227850381|gb|EEJ60467.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus johnsonii ATCC 33200] Length = 829 Score = 385 bits (990), Expect = e-104, Method: Compositional matrix adjust. Identities = 239/720 (33%), Positives = 386/720 (53%), Gaps = 53/720 (7%) Query: 6 ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65 ++N N + ++ V L + +L YA+S I RA+PD+RDG KPV RRI++ M E+G Sbjct: 1 MANENQPQDHRIRNVDLTHTMRTSFLDYAMSVIVARALPDVRDGLKPVQRRILYGMHELG 60 Query: 66 LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125 + +KKSARIVGEV+GK HPHGD S+Y ++ +AQ F RY L+ G GNFG++DGD Sbjct: 61 VTPDKQYKKSARIVGEVMGKFHPHGDSSIYLAMAHMAQDFSYRYMLVDGHGNFGSVDGDE 120 Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185 AA RYTEA+M+++A +L+ ++++ +D++ Y++ ++EPVV P++ PNLL NG SGIAV Sbjct: 121 PAAMRYTEAKMSKIAVEMLRDINKETIDWQRNYDDTENEPVVLPARIPNLLVNGASGIAV 180 Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245 GM T+IP HN+ E+ L+DNP+++ + L++ I GPDFPTGGI++ R I +Y Sbjct: 181 GMTTNIPPHNLAEVIRGIHMLMDNPDVTTKDLMKVIPGPDFPTGGIVM-GRGGIYRAYET 239 Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305 G+G VRA+ +E G IVVTE+PY V K+ L++KIA+L K I + +RDES Sbjct: 240 GKGNIIVRAKTEIETEKNGRERIVVTELPYLVNKAELVKKIADLAREKTIDGITGVRDES 299 Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365 + + R +++ ++F + M+ F +NM + G P + L +L+ +L Sbjct: 300 DQTGMRITIDIRRDASASVVLNNLFKETQMQANFGMNMVAIVNG-APHFLTLKQMLEYYL 358 Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFS 422 H+ +V+ RR+ F ++ + R IL GL IA +IDEII IIR N D K ++ F Sbjct: 359 HHQEDVITRRTKFELKKAEARAHILAGLRIALDHIDEIIKIIRGSQNSDIAKAQLIQNFG 418 Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482 L + Q AIL++RL L LE +I++E +L A+ +L ++ I E+ ++ Sbjct: 419 LDDRQSQAILDMRLVRLTGLERDKIEAEYQDLKAKIADYKDILAKPERIDEIIYNELLDI 478 Query: 483 KEIFSKSTDLGRRRTTFCE---VSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539 ++ F RRT E VS D + +IE++ + + +++ G+I+ + + Sbjct: 479 QKRFGDD-----RRTKIAEGEAVSIED-----EDLIEQKDVLLTLTHNGYIKRMSADEFK 528 Query: 540 --------LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LP 576 + + ++ D + + + T D +L + GK Y+ LP Sbjct: 529 VQNRGGRGIKGMGVQDDDFINHLIFSSTHDFLLFFTNLGKVYSKKAYEIPEFGRNAKGLP 588 Query: 577 AGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR 636 NLL GE IQ +I++ D L V+ G + SE R Sbjct: 589 IVNLLE-LDKGEKIQAVINVPEGAD---------DNYLFFVTKMGTVKRTKVSEFQNIRR 638 Query: 637 KGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSR-GKGVRLQSYKD 694 G L + +++ V+ G ++G + + F+ + M R GVR + +D Sbjct: 639 SGLIALTLRDGDELNNVLTTDGKQNIIIGTHLGYAVTFNEKDVRSMGRTAAGVRGINLRD 698 Score = 37.4 bits (85), Expect = 9.0, Method: Compositional matrix adjust. Identities = 43/161 (26%), Positives = 68/161 (42%), Gaps = 6/161 (3%) Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHN 599 L AL ++GD L L I++ + G A T ++ S G A I+L N Sbjct: 641 LIALTLRDGDELNNVLTTDGKQNIIIGTHLGYAVTFNEKDVRS-MGRTAAGVRGINLRDN 699 Query: 600 QDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKV 656 +V + + + ++LV+S KG SE R GK + EK + V V Sbjct: 700 DYVVGSDILEPDSEVLVISEKGYGKRTAASEYPVKGRGGKGIKTANITEKNGPLAGVTVV 759 Query: 657 TGDH-VAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDG 695 GD + ++ ++ F +D + + R GVRL DG Sbjct: 760 NGDEDIMLITSAGVMIRFDVDDVSQTGRATLGVRLIKVDDG 800 >gi|29830865|ref|NP_825499.1| DNA gyrase subunit A [Streptomyces avermitilis MA-4680] gi|29607978|dbj|BAC72034.1| putative DNA gyrase subunit A [Streptomyces avermitilis MA-4680] Length = 864 Score = 385 bits (990), Expect = e-104, Method: Compositional matrix adjust. Identities = 232/626 (37%), Positives = 357/626 (57%), Gaps = 33/626 (5%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 V+ V L ++ YL YA+S I RA+PD+RDG KPVHRR+++AM + G F K A Sbjct: 20 VEPVGLETEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMYDGGYRPEKGFYKCA 79 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+V+G HPHGD S+YD+LVRLAQP+ R PL+ GNFG+ D AAA RYTE +M Sbjct: 80 RVVGDVMGNYHPHGDSSIYDALVRLAQPWSMRMPLVDSNGNFGSPGNDPAAAMRYTECKM 139 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 ++ +++ +DE+ VDF D Y+ EP V P++FPNLL NG++GIAVGMAT+IP HN+ Sbjct: 140 MPLSMEMVRDIDEETVDFTDNYDGRSQEPTVLPARFPNLLINGSAGIAVGMATNIPPHNL 199 Query: 197 QEICEAALALIDNPEISIEKLLEYII----GPDFPTGGIIVESRESIVESYRLGRGGFRV 252 +E+ A ++NPE S E+LL+ +I GPDFP+G ++V R+ I E+YR GRG + Sbjct: 200 REVASGAQWYLENPEASHEELLDALIERIKGPDFPSGALVV-GRKGIEEAYRTGRGSITM 258 Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV--R 310 RA VEE+ + C+VVTE+PYQV L +KIA+L+ ++ + D+RDE++ R Sbjct: 259 RAVVEVEEI-QNRQCLVVTELPYQVNPDNLAQKIADLVKDGKVGGIADVRDETSSRTGQR 317 Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370 +V+ K R +++ +++ +D++T F NM L G VP+ + LD ++ W+ H+ E Sbjct: 318 LVIVLK-RDAVAKVVLNNLYKHTDLQTNFGANMLALVDG-VPRTLSLDAFIRHWVTHQIE 375 Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQ 427 V+ RR+ FR++ + R IL+GLL A IDE+IA+IR D + ++ + E Q Sbjct: 376 VIVRRTKFRLRKAEERAHILRGLLKALDAIDEVIALIRRSDTVEIAREGLMGLLEIDEIQ 435 Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487 +AIL ++LR L LE +I E D L A+ + +++L S +Q I+ E+ + E + Sbjct: 436 ANAILEMQLRRLAALERQKIIQEHDELQAKITEYNAILASPVRQRGIISEELAAIVEKYG 495 Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVD 539 RR+ D + +I +E I V I+ G+I RS K Sbjct: 496 DD-----RRSKLVPF---DGDMSIEDLIAEEDIVVTITRGGYIKRTKTEDYRSQKRGGKG 547 Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEAIQLLIDLN 597 + K+ D + + T +L + G+ Y A L +GR G+ + L+ Sbjct: 548 VRGTKLKQDDIVDHFFVSTTHHWLLFFTNKGRVYRAKAYELPDAGRDARGQHVANLLAFQ 607 Query: 598 HNQDI--VTAFVYDSTCKLLVVSSKG 621 ++ I + A LV+++KG Sbjct: 608 PDEAIAEILAIRDYEAVPYLVLATKG 633 >gi|87199935|ref|YP_497192.1| DNA gyrase subunit A [Novosphingobium aromaticivorans DSM 12444] gi|87135616|gb|ABD26358.1| DNA gyrase subunit A [Novosphingobium aromaticivorans DSM 12444] Length = 908 Score = 385 bits (990), Expect = e-104, Method: Compositional matrix adjust. Identities = 272/800 (34%), Positives = 413/800 (51%), Gaps = 89/800 (11%) Query: 6 ISNSNTLVEENVKAVSLRFA-------LEERYLAYALSTIKERAIPDLRDGFKPVHRRII 58 +S+ T+++ A F ++ YL YA+S I RA+PD+RDG KPVHRRI+ Sbjct: 1 MSDDTTIIDPPAPAPEGEFQRIDIVDEMKTSYLDYAMSVIVSRALPDVRDGLKPVHRRIL 60 Query: 59 HAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNF 118 E G A++KSARIVG+ +GK HPHGD ++YD+L R+ Q + R PLI GQGNF Sbjct: 61 WTSHENGFVSTKAYRKSARIVGDAMGKYHPHGDAAIYDALARMTQDWSMRLPLIDGQGNF 120 Query: 119 GNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLAN 178 G++D D A+ RYTEAR+ +VA+ +L +D+D VDF+ Y+ + EP V P++FPNLL N Sbjct: 121 GSMDPDPPASMRYTEARLAKVADSLLADIDKDTVDFQPNYDGAEHEPQVLPARFPNLLVN 180 Query: 179 GTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRES 238 G GIAVGMAT+IP HN+ E+ +A LA +DNP ++I++L++ I GPDFPT +I+ + Sbjct: 181 GAGGIAVGMATNIPPHNLGEVIDACLAYMDNPLVTIDELIQIIPGPDFPTAPLILGT-AG 239 Query: 239 IVESYRLGRGGFRVRARWCVEEVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL 297 ++Y GRG +RAR +EE GRG IV+T IPYQV KS L+EKIAE KRI Sbjct: 240 ARKAYHEGRGSIIMRARHQIEE-GRGDRRSIVLTSIPYQVGKSGLVEKIAEAAKDKRIEG 298 Query: 298 LEDIRDESA-EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMP 356 + DIRDES E VR+V+ K R P++++ ++ + ++ FP NM + GR P+V+ Sbjct: 299 ISDIRDESNREGVRVVIDLK-RDATPEVVLNQLWRNTPAQSSFPANMLAIRGGR-PEVLN 356 Query: 357 LDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP--- 413 L I++ ++ R EV+ RR+ F + R IL GL+IA N+DE++ IIR P Sbjct: 357 LKDIIESFVRFREEVITRRTKFELNKARDRAHILLGLVIAVTNLDEVVRIIRGSPNPAVA 416 Query: 414 KPVMVSR---------------------------FSLTENQVDAILNLRLRSLRKLEEYQ 446 + +++R + L+E QV AIL+LRL L L + Sbjct: 417 RETLLAREWPMGEIAPYIRLVEAIEDAGVAEAATYRLSEIQVRAILDLRLHRLTALGRDE 476 Query: 447 IKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRAD 506 I EL+ L + S+L ++ + + E+ EV+ F+ E++ Sbjct: 477 IGDELEGLAKAIAEYLSILADREKLFGVMRQELLEVQHAFATPRK--------SEITAPA 528 Query: 507 KATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAH 558 + +IE+E + V I+ G+I R+ S + K+ D++ Sbjct: 529 DGIEDEDLIEREDMVVTITLDGYIKRTPLSTFRAQNRGGKGRSGMATKDEDAVATMFVTS 588 Query: 559 TTDRILLLSTDGKAYTLPAGNLLSG----RGHGEAIQLLIDLNHNQDIVTAFVYDST--- 611 T +L ST GK Y L L G RG + +L L+ ++ I T Sbjct: 589 THTPVLFFSTAGKVYRLKVWRLPEGGPTTRGR-PVVNMLPALDKDETIATVLPLPEDEAE 647 Query: 612 -CKLLVV--SSKGN-------AFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHV 661 KL VV ++KGN AF + I +N + F + S++ + + + D V Sbjct: 648 WGKLSVVFATAKGNVRRNSMDAF----ANIPSNGKFAMKFEEDSADRLIGVALLEASDDV 703 Query: 662 AVVGENRKLLIFSIDQIPEMSR--GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719 + + K + F+ D++ E + GVR + K G +VI I + Y Sbjct: 704 LLATRSGKAIRFAGDEVREFTSRTSTGVRGMTLK--GDDEVISLSILHRVGTTPDEREDY 761 Query: 720 NRSENDLLGWLGKRGGVGSL 739 R W G++ G +L Sbjct: 762 VR----FAPWKGEKEGEPAL 777 >gi|71906869|ref|YP_284456.1| DNA gyrase subunit A [Dechloromonas aromatica RCB] gi|71846490|gb|AAZ45986.1| DNA gyrase subunit A [Dechloromonas aromatica RCB] Length = 879 Score = 385 bits (990), Expect = e-104, Method: Compositional matrix adjust. Identities = 255/737 (34%), Positives = 396/737 (53%), Gaps = 83/737 (11%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 +SL + YL YA+S I RA+PD RDG KPVHRR++ AM E+ D+ A+KKSARIV Sbjct: 11 ISLEDEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHELNNDWNKAYKKSARIV 70 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGD +VYD++VR+AQ F RY L+ GQGNFG++DGDSAAA RYTE RM ++ Sbjct: 71 GDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDSAAAMRYTEVRMAKI 130 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 +L+ +D++ VDF Y+ ++EP+V P++ PNLL NG+SGIAVGMAT+IP HN+ E+ Sbjct: 131 GHQMLEDLDKETVDFGPNYDGSENEPLVMPARIPNLLINGSSGIAVGMATNIPPHNLNEV 190 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 LAL++NP +SIE L+ YI PDFPT G+I + E Y+ GRG +RAR E Sbjct: 191 IAGCLALLENPALSIEDLIAYIPAPDFPTAGLIY-GMTGVREGYQTGRGRVIMRARTHFE 249 Query: 260 EVGR--GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317 ++ + G ++V EIPYQV K LIEKIAEL+ K+I + DIRDES + ++ Sbjct: 250 DMEKSNGRQALIVDEIPYQVNKKSLIEKIAELVNEKKIEGISDIRDESDKSGMRIVIELK 309 Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377 R ++++ +++ + ++ F +NM L G+ P+++ L +L+ +L+HRREV+ RR+ Sbjct: 310 RGEVGEVILNNLYKQTQLQDTFGMNMVALVDGQ-PRLLNLKQMLECFLSHRREVITRRTV 368 Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR----------------- 420 + ++ R IL+GL +A N+DEII +I+ P P R Sbjct: 369 YELRKARERGHILEGLAVALSNVDEIITLIKA--APTPADAKRGLMERTWRSAVVEEMLV 426 Query: 421 ----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458 + L++ Q AIL LRL+ L LE+ +I E +++A+ Sbjct: 427 RAASDASRPEGLAPEFGLSAQGYRLSDAQAQAILELRLQRLTGLEQDKIVGEYKDVMAKI 486 Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518 + +L ++ I E+ ++E F RR+ + + + +L+ +I + Sbjct: 487 LDLLDILAKPERITEIIVTELVAIREQFGDE-----RRSEI--ILQTHELSLED-LITPQ 538 Query: 519 PITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570 + V +S+ G+I R+ + A K+ D + A+T D IL S G Sbjct: 539 DMVVTLSHGGYIKAQPLADYRAQRRGGRGKQAAAIKDEDFVDHLFMANTHDFILCFSNRG 598 Query: 571 KAYTL-----PAGNLLSGRGHGEAIQLLIDLNHNQDI-----VTAFVYDSTCKLLVVSSK 620 + Y L P G+ +S G+ I L L + I V F D K + ++++ Sbjct: 599 RCYWLKVYEAPQGSRVS---RGKPIVNLFPLEEGERINAVLPVKEFADD---KFIFMATR 652 Query: 621 GNAFIVEESEIIANTRK-GKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQI 678 +N RK G + + ++ + V TG + +V K + F + + Sbjct: 653 AGTVKKTPLSDFSNPRKAGIIAVDLLDDDYLIGVELTTGQSDIVLVSNAGKAVWFDEEDV 712 Query: 679 PEMSRG----KGVRLQS 691 M RG +G++LQ+ Sbjct: 713 RPMGRGARGVRGMKLQA 729 >gi|254252934|ref|ZP_04946252.1| DNA gyrase subunit A [Burkholderia dolosa AUO158] gi|124895543|gb|EAY69423.1| DNA gyrase subunit A [Burkholderia dolosa AUO158] Length = 867 Score = 385 bits (990), Expect = e-104, Method: Compositional matrix adjust. Identities = 231/621 (37%), Positives = 347/621 (55%), Gaps = 72/621 (11%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 SL + YL YA+S I RA+PD+RDG KPVHRR++ AM E+ D+ A+KKSARIV Sbjct: 11 TSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRAYKKSARIV 70 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGD +VYD++VR+AQ F RY LI GQGNFG+IDGD+AAA RYTE RM ++ Sbjct: 71 GDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLIDGQGNFGSIDGDNAAAMRYTEIRMAKI 130 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 +L +D++ VDF Y+ +++P V PS+ PNLL NG+SGIAVGMAT+IP HN+ E+ Sbjct: 131 GHELLADIDKETVDFEPNYDGNETQPSVLPSRIPNLLINGSSGIAVGMATNIPPHNLNEV 190 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 +A L+ NP+ ++++L+E I PDFPT GII + + YR GRG +RA E Sbjct: 191 VDACQHLLSNPDATVDELIEIIPAPDFPTAGIIY-GVAGVRDGYRTGRGRVVMRAATHFE 249 Query: 260 EVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318 E+ RG I+V E+PYQV K L+E+IAEL+ K++ + DIRDES + V+ R Sbjct: 250 EIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKR 309 Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378 P++++ +++ + ++ F +NM L G+ P+++ L IL+ +L+HRREVL RR+ + Sbjct: 310 GEVPEVVLNNLYKATQLQDTFGMNMVALVDGQ-PKLLNLKEILQCFLSHRREVLTRRTIY 368 Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV-----------------MVSR- 420 ++ R +L+GL +A NIDE IAII+ P P+ M++R Sbjct: 369 ELRKARERGHVLEGLAVALANIDEFIAIIKAAPTP-PIAKQELMTKSWDSSLVREMLTRA 427 Query: 421 -----------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451 + L++ Q IL +RL+ L LE+ +I E Sbjct: 428 ESENAAAGGRAAYRPEGLNPAYGMQADGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEY 487 Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511 ++A+ + +L ++ I E+ VK F G R + E++ + T Sbjct: 488 REVMAQIADLLDILARPERITTMIGDELTTVKAEF------GDARRSRIELNATELNT-- 539 Query: 512 QAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRI 563 + +I + + V +S+ G++ R+ K A KE D ++ A+T D + Sbjct: 540 EDLITPQDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYM 599 Query: 564 LLLSTDG-----KAYTLPAGN 579 L S G K Y +P G+ Sbjct: 600 LCFSNRGRVYWIKVYEVPQGS 620 >gi|91776041|ref|YP_545797.1| DNA gyrase subunit A [Methylobacillus flagellatus KT] gi|91710028|gb|ABE49956.1| DNA gyrase subunit A [Methylobacillus flagellatus KT] Length = 864 Score = 385 bits (990), Expect = e-104, Method: Compositional matrix adjust. Identities = 259/747 (34%), Positives = 407/747 (54%), Gaps = 77/747 (10%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 +SL + YL YA+S I RA+PD+RDG KPVHRR++ AM E+ D+ +KKSARIV Sbjct: 23 ISLEDEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRPYKKSARIV 82 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGD +VYD++VR+AQ F RY L+ GQGNFG++DGD+AAA RYTE RM ++ Sbjct: 83 GDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMARI 142 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A +L +D++ VDF Y+ + EP++ P++ PNLL NG+SGIAVGMAT+IP HN+ E+ Sbjct: 143 AHELLADIDKETVDFGPNYDGSEHEPLIMPARIPNLLINGSSGIAVGMATNIPPHNLNEV 202 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 A LAL+ NPE ++++L+E I PDFPT GII + + E YR GRG +R R VE Sbjct: 203 IAACLALLKNPETTVDELIEIIPAPDFPTAGIIYGT-VGVREGYRTGRGRVVMRGRTHVE 261 Query: 260 EVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318 ++ +G+ ++V E+PYQV K +EKIAEL+ K+I + D+RDES + V+ R Sbjct: 262 DLEKGNRQALIVDELPYQVNKKTFVEKIAELVNEKKIEGISDLRDESDKSGMRVVIELKR 321 Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378 P++++ +++ + ++ F +NM L G+ P+++ L +L+ +L HRREV+ RR+ + Sbjct: 322 GEVPEVVLNNLYKQTQLQDTFGMNMVALLDGQ-PRLLNLKQMLEAFLRHRREVVTRRTVY 380 Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP-------------KPV---MVSR-- 420 ++ R +L+GL +A N+DE+IA+I+ P PV M+ R Sbjct: 381 ELRKARERGHVLEGLAVALANVDEMIALIKAAPTPPEAKRELMARTWKSPVVEEMLKRAA 440 Query: 421 -------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKI 461 + L++ Q IL +RL+ L LE+ +I +E ++ + I Sbjct: 441 MEASRPEGLAVNFGLTPDGYKLSDVQAQEILQMRLQRLTGLEQDKIVNEYKEIM---DVI 497 Query: 462 DSLLN--SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEP 519 LL+ + ++ QI E E+ I ++ D +RR+ V A +L+ +I + Sbjct: 498 ADLLDILARSERVTQIIVE--ELTAILNQFGD--KRRSEI--VHNAQDLSLED-LITPQD 550 Query: 520 ITVVISNRGWIRS--LKSHSVDL------SALHFKEGDSLKIALHAHTTDRILLLSTDG- 570 + V +S+ G+++S L+ + A KE D + A+T D IL S+ G Sbjct: 551 VVVTLSHTGYVKSQPLEEYRAQRRGGRGKQAAATKEDDFIDKMFVANTHDYILCFSSRGR 610 Query: 571 ----KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNA 623 K Y +P G+ +S G+ I L L + I +D + + ++KG Sbjct: 611 VYWLKVYEVPQGSRVS---RGKPIVNLFPLEDGEKINAILPVKEFDENHFVFMATAKGTV 667 Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--DHVAVVGENRKLLIFSIDQIPEM 681 +E R G L + + + + +VT + + +V K + F + + M Sbjct: 668 KKTALTEFSNPRRSGIIALNLDDGDYL-IGAEVTNGVNDIVLVSNGGKAVWFDEEDVRPM 726 Query: 682 SR-GKGVRLQSYKDGGISDVICFKICE 707 R +GVR K G VI I + Sbjct: 727 GRAARGVR--GMKLQGKQQVISLLIAD 751 >gi|182437499|ref|YP_001825218.1| DNA gyrase subunit A [Streptomyces griseus subsp. griseus NBRC 13350] gi|178466015|dbj|BAG20535.1| putative DNA gyrase subunit A [Streptomyces griseus subsp. griseus NBRC 13350] Length = 855 Score = 385 bits (990), Expect = e-104, Method: Compositional matrix adjust. Identities = 226/627 (36%), Positives = 358/627 (57%), Gaps = 34/627 (5%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 V+ V L ++ YL YA+S I RA+PD+RDG KPVHRR+++AM + G F K A Sbjct: 3 VEPVGLETEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMYDGGYRPEKGFYKCA 62 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+V+G HPHGD S+YD+LVRLAQP+ R PL+ GNFG+ D AAA RYTE +M Sbjct: 63 RVVGDVMGTYHPHGDSSIYDALVRLAQPWSLRMPLVDSNGNFGSPGNDPAAAMRYTECKM 122 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 ++ +++ +DE+ VDF+D Y+ + EP V P++FPNLL NG++GIAVGMAT+IP HN+ Sbjct: 123 MPLSMEMVRDIDEETVDFQDNYDGRNQEPTVLPARFPNLLVNGSAGIAVGMATNIPPHNL 182 Query: 197 QEICEAALALIDNPEISIEKLLEYII----GPDFPTGGIIVESRESIVESYRLGRGGFRV 252 +E+ A +++PE S E+LL+ +I GPDFPTG ++V R+ I E+YR GRG + Sbjct: 183 REVAAGAQWYLEHPEASHEELLDALIERIKGPDFPTGALVV-GRKGIEEAYRTGRGSITM 241 Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV--R 310 RA VEE+ +G C+VVTE+P+Q L +KIA+L+ ++ + D+RDE++ R Sbjct: 242 RAVVAVEEI-QGRQCLVVTELPFQTNPDNLAQKIADLVKDGKVGGIADVRDETSSRTGQR 300 Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370 +V+ K R +++ +++ +D++T F NM L G VP+ + +D ++ W+ H+ E Sbjct: 301 LVVVLK-RDAVAKVVLNNLYKHTDLQTNFGANMLALVDG-VPRTLSIDAFIRHWVTHQIE 358 Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQ 427 V+ RR+ FR++ + R IL+GLL A IDE+IA+IR + + ++ + E Q Sbjct: 359 VIVRRTRFRLRKAEERAHILRGLLKALNAIDEVIALIRRSNTVEIAREGLMGLLEIDELQ 418 Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487 +AIL ++LR L LE +I +E D L A+ + + +L S +Q ++ E+ + + F Sbjct: 419 ANAILEMQLRRLAALEHQKITAEHDELQAKINEYNEILASPAKQRAIVSEELAAIVDKFG 478 Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVD 539 RR+ D + +I +E I V IS G++ RS K Sbjct: 479 DD-----RRSQLVPF---DGDMSIEDLIAEEDIVVTISRSGYVKRTKTDDYRSQKRGGKG 530 Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEAIQLLIDLN 597 + +E D + + T +L + G+ Y A L +GR G+ + L+ Sbjct: 531 VRGTKLREDDIVDHFFVSTTHHWLLFFTNKGRVYRAKAYELPDAGRDARGQHVANLLAFQ 590 Query: 598 HNQDIVTAFV---YDSTCKLLVVSSKG 621 ++ I Y++ L++ + G Sbjct: 591 PDEKIAQILAIRDYEAVPYLILATKGG 617 >gi|260662543|ref|ZP_05863438.1| DNA gyrase, A subunit [Lactobacillus fermentum 28-3-CHN] gi|260553234|gb|EEX26177.1| DNA gyrase, A subunit [Lactobacillus fermentum 28-3-CHN] Length = 836 Score = 385 bits (989), Expect = e-104, Method: Compositional matrix adjust. Identities = 214/568 (37%), Positives = 344/568 (60%), Gaps = 22/568 (3%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 V+L + +L YA+S I RA+PD+RDG KPV RRI++ M+E+G+ +KKSARIV Sbjct: 13 VNLTSQMRNSFLDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVTPDKPYKKSARIV 72 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+V+GK HPHGD S+Y+ LVR+AQ F RY L+ G GNFG++DGD AAA RYTEA+M+++ Sbjct: 73 GDVMGKFHPHGDSSIYEGLVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAMRYTEAKMSKI 132 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A +++ +++D VDF+D Y+ + EP V P++FPNLL NG SGIAVGMAT+IP+HN+ E+ Sbjct: 133 AVEMVRDINKDTVDFQDNYDGTEKEPAVLPARFPNLLVNGASGIAVGMATNIPTHNLGEV 192 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 A L++NP++++ +L++ + GPDFPTGG+++ + I ++Y G+G VRA+ +E Sbjct: 193 ISAIHMLMNNPDVTVAELMKALPGPDFPTGGVVM-GKAGIRQAYESGQGSIIVRAKVEIE 251 Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLFPKNR 318 E G IVV EIPY V K++LIE+IA L K I + D+ DE+ E +RIV+ + R Sbjct: 252 EQKNGKQRIVVHEIPYMVNKAKLIERIANLAREKEIDGITDVNDETDREGMRIVIDVR-R 310 Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378 ++++ +++ ++ M+T + NM + G P+++ L IL+ +L H+ EV+ RR+ F Sbjct: 311 DASAEVILNNLYKMTLMQTTYNFNMLAIVKG-APKILSLKEILQYYLEHQEEVVRRRTEF 369 Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAILNLR 435 ++ R I+ GL IA +ID II IIR+ + K ++ +SL++ Q AIL+LR Sbjct: 370 DLKKAQNRAHIVAGLRIALDHIDAIINIIRSSETSELAKQRLMDDYSLSDRQAQAILDLR 429 Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495 L L LE +I+ E L+A +L + +++ NQI + E+ EI +K D R Sbjct: 430 LVRLTGLEREKIEDEYQKLVAAIADYKDIL-AHQERINQIIYD--ELMEIQNKFGDERRT 486 Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD--------LSALHFKE 547 ++S + L + V +++ G+++ L + + Sbjct: 487 ELQVGDISNIEDEDLIEEEDI----IVTLTHNGYVKRLPVDEFKAQNRGGRGVKGMGVHS 542 Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTL 575 D ++ + + T D +L + GK + + Sbjct: 543 DDFIEHLVASSTHDLLLFFTNTGKVFAM 570 >gi|256831261|ref|YP_003159988.1| DNA gyrase, A subunit [Jonesia denitrificans DSM 20603] gi|256684792|gb|ACV07685.1| DNA gyrase, A subunit [Jonesia denitrificans DSM 20603] Length = 871 Score = 385 bits (989), Expect = e-104, Method: Compositional matrix adjust. Identities = 235/639 (36%), Positives = 367/639 (57%), Gaps = 57/639 (8%) Query: 1 MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60 M N ++ + +V N++ V L+ ++ YL YA+S I RA+P++RDG KPVHRR+I+A Sbjct: 7 MAQGNAADVSGVVHGNIEQVDLQTEMQRSYLDYAMSVIVGRALPEVRDGLKPVHRRVIYA 66 Query: 61 MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120 M + G A+ K +R+VG+V+GK HPHGD ++YD+LVRL Q + RYPL +GQGNFG+ Sbjct: 67 MYDGGYRPDRAYSKCSRVVGDVMGKYHPHGDTAIYDTLVRLVQDWTLRYPLAAGQGNFGS 126 Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180 D AAA RYTE RM Q+A +++ +D++ VDF+D Y+ EP V P++FPNLL NG+ Sbjct: 127 PGNDPAAAPRYTETRMAQIAMEMVRDIDKNTVDFQDNYDGRTQEPAVLPARFPNLLVNGS 186 Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYII----GPDFPTGGIIVESR 236 +GIAVGMAT+IP HN++E+ E + NP+ S E+L E +I GPDFPTG I+ R Sbjct: 187 AGIAVGMATNIPPHNLREVAEGVAWYLANPDASREELREALIARIKGPDFPTGATIL-GR 245 Query: 237 ESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP 296 I ++YR GRG +RA VEE+ +G C+VVTE+PYQV L KIA+L RI Sbjct: 246 SGIDDAYRTGRGSITMRAVVNVEEI-QGRQCLVVTELPYQVNPDNLALKIADLTKEGRIQ 304 Query: 297 LLEDIRDESAEDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQV 354 + DIRDE++ R+V+ K R +++ +++ + ++ F NM L G VP+ Sbjct: 305 GIADIRDETSGRTGQRLVIVLK-RDAVAKVVLNNLYKHTQLQENFSANMLALVDG-VPRT 362 Query: 355 MPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---D 411 + +D + W+ H+ +V+ RR++F ++ + ++ IL+G L A N+DE+IA+IR + Sbjct: 363 LSIDAFIHHWVNHQLDVISRRTAFLLKEAEDKIHILRGYLRALDNLDEVIALIRRSPTVE 422 Query: 412 KPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKID--SLLNSGK 469 + + ++ + + Q AILNL+LR L LE +I E D+L E++ +D +L S + Sbjct: 423 EARGGLIELLGIDDIQATAILNLQLRRLAALERQKIIDEHDDL--ERQILDYRDILASPQ 480 Query: 470 QQWNQIACEIREVKEIFSKSTDLGRRRTTFC----EVSRADKATLQQAMIEKEPITVVIS 525 +Q + + E+ E+ + + RR+T EVS D +I +E + V I+ Sbjct: 481 RQRDIVGSELSEIVDRYGDE-----RRSTILPYGGEVSMED-------LIAEEDVVVTIT 528 Query: 526 NRGWIRSLKSHSV--------DLSALHFKEGDSLKIALHAHTTDRILLLSTD------GK 571 G+++ +S + + +E D + TT LL T+ K Sbjct: 529 RGGYVKRTRSDNYRAQKRGGKGVRGTQLREDDIVD-HFFVTTTHHWLLFFTNLGRVYRAK 587 Query: 572 AYTLPAGNLLSGRGH---------GEAIQLLIDLNHNQD 601 AY LP G+ S H GE+I ++ L + +D Sbjct: 588 AYELPEGSRESKGQHVANLLAFQPGESIAQVLALRNYED 626 >gi|22298912|ref|NP_682159.1| DNA gyrase subunit A [Thermosynechococcus elongatus BP-1] gi|22295093|dbj|BAC08921.1| DNA gyrase A subunit [Thermosynechococcus elongatus BP-1] Length = 853 Score = 385 bits (989), Expect = e-104, Method: Compositional matrix adjust. Identities = 244/702 (34%), Positives = 391/702 (55%), Gaps = 41/702 (5%) Query: 22 LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGE 81 LR + YL YA+S I RA+PD RDG KPVHRRI++AM E+GL F+K AR+VGE Sbjct: 15 LREEISRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTSDRPFRKCARVVGE 74 Query: 82 VIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVA- 140 V+GK HPHGD +VYD+LVR+AQ F R+PLI G GNFG+ID D AA RYTE R+ +A Sbjct: 75 VLGKYHPHGDSAVYDALVRMAQDFSMRHPLIEGHGNFGSIDNDPPAAMRYTECRLQALAT 134 Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200 E +LQ ++++ VDF D ++ EP+V P++ P LL NG SGIAVGMAT+IP HN+ E+ Sbjct: 135 EALLQDIEQETVDFVDNFDGSQQEPLVLPARIPQLLLNGASGIAVGMATNIPPHNLGELV 194 Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEE 260 + +ALI +P++S +L+ YI GPDFPTGG I+ + I E+Y GRG +RA +E Sbjct: 195 DGLVALIHHPQMSDRELMRYIPGPDFPTGGHIL-GQGGIEEAYTTGRGSMTLRAVATIET 253 Query: 261 V---GRGSW-CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFP 315 + GR I++TE+PYQ K+ L+EKIAEL+ K+I + D+RDES D +R+V+ Sbjct: 254 LEAPGRQPREAIIITELPYQTNKAALMEKIAELVNEKKIEGIADLRDESDRDGIRVVIEL 313 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 K R P +++ +++ + ++ F NM + G PQ++ L L+ +L R E + RR Sbjct: 314 K-RDAHPRVVLNNLYKQTPLQVNFGANMLAIVNGE-PQLLTLKRSLEVFLRFREEAIARR 371 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAIL 432 + + ++ + R +L+GLL+A N+D +I +IR+ + ++ ++L+E Q DAIL Sbjct: 372 TRYALRKAEERDHLLQGLLVALANLDAVIQLIRSASDTALARQQLMQTYALSEAQADAIL 431 Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492 ++LR L LE +I+ E L + +L ++ I E+ E+K F+ Sbjct: 432 QMQLRRLTALEAEKIEREHAELQRQIADYRDILAHRQRVLEIIEKEVTELKAKFATP--- 488 Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA--------LH 544 RR+ + AD +I + ++++ +G+I+ + + + + Sbjct: 489 --RRSRIVQ---ADGEISDIDLIANDKSVILVTQQGYIKRMPVDTFEAQSRDGRGRKGAE 543 Query: 545 FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQDI 602 KE D+++ + DRIL S G Y L A + SG + G I L+ + + I Sbjct: 544 IKEDDAVEHFFSCNDHDRILFFSDRGLVYALAAYQIPSGSRQARGTPIVQLLPIPREEKI 603 Query: 603 VTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE--KMKLVVKVT 657 + + L++++ KG FI + + + + +S EE +++ V + Sbjct: 604 TSVIAVQEFSEDEYLVMLTRKG--FIKKTPLAAFSHIRSNGLIAISLEEGDQLRWVRRTR 661 Query: 658 GDHVAVVGENRKLLIF---SIDQIPEMSRG-KGVRLQSYKDG 695 ++G + + I S DQ+ + R +GV+ + + G Sbjct: 662 EQDTIIIGSRQGMAIHFRASHDQLRPLGRATRGVKSMNLRPG 703 >gi|325981795|ref|YP_004294197.1| DNA gyrase, A subunit [Nitrosomonas sp. AL212] gi|325531314|gb|ADZ26035.1| DNA gyrase, A subunit [Nitrosomonas sp. AL212] Length = 852 Score = 385 bits (989), Expect = e-104, Method: Compositional matrix adjust. Identities = 255/726 (35%), Positives = 391/726 (53%), Gaps = 69/726 (9%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 +SL + YL YA+S I RA+PD+RDG KPVHRR++ AM E+ D+ +KKSARIV Sbjct: 11 ISLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELSNDWNRPYKKSARIV 70 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGD +VYD++VR+AQ F RY LI GQGNFG++DGD+AAA RYTE RM+++ Sbjct: 71 GDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLIDGQGNFGSVDGDNAAAMRYTEIRMSRI 130 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A +L +D++ VDF Y++ + EP++ P+K PNLL NG+SGIAVGMAT+IP HN+ E+ Sbjct: 131 AHELLVDLDKETVDFGPNYDDSEKEPLILPAKIPNLLINGSSGIAVGMATNIPPHNLSEV 190 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 EA LAL+ N ISI++L++ I PDFPT GII + + YR GRG +RAR E Sbjct: 191 VEACLALLKNSNISIDELIDLIPAPDFPTAGIIY-GVNGVRDGYRTGRGRVVMRARTHFE 249 Query: 260 EVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318 ++ +G+ I++ E+PYQV K+ L+ +I EL+ K+I + D+RDES + V+ R Sbjct: 250 DLEKGNRQSIIIDELPYQVNKANLLIRIGELVRDKKIEGISDLRDESDKSGMRVVIELKR 309 Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378 P++++ +++ + M+ F +NM L G+ P+++ L IL +L HRREV+ RR+ F Sbjct: 310 GEVPEVILNNLYKETQMQDTFGMNMVALLDGQ-PRLLNLKQILDAFLRHRREVVTRRTVF 368 Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV----------------MVSR-- 420 ++ R +L+GL +A N+DEIIA+I+ P M++R Sbjct: 369 ELKKARERGHLLEGLAVALSNVDEIIALIKAAPTPADAKEALMAKAWHSQLVEEMLTRAM 428 Query: 421 ---------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKE 459 + L++ Q AIL LRL+ L LE+ +I +E +++ E Sbjct: 429 ADANALRPEGLDDMFGLKAQGYHLSDAQAQAILELRLQRLTGLEQEKIVAEYKDVI---E 485 Query: 460 KIDSLLN--SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517 KI L+ + ++ QI E E+ + G R + V D + + +I Sbjct: 486 KIIDYLDILANPERITQIITE-----ELDAIKLQFGDERRSEIVVDTQDLS--MEDLITP 538 Query: 518 EPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569 + V +S+ G+I R+ K A KE D + A+T D IL S+ Sbjct: 539 ADVVVTLSHTGYIKSQLLDDYRAQKRGGRGKLATSTKEDDFIDKLFIANTHDYILCFSSL 598 Query: 570 GKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQD---IVTAFVYDSTCKLLVVSSKGNAF 624 G+ Y + + G + G+ I + L + I+ +D + + +S G Sbjct: 599 GRVYWIKVYEVPQGGRQSRGKPIINWVQLEEGEKINAILPVKTFDENRFVFMATSFGTVK 658 Query: 625 IVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR 683 SE G + + + + V G H V + +N K + FS + + M R Sbjct: 659 KTPLSEFSRPRNNGIIAIGLDEGDFLIGVELTEGKHDVMLFSDNGKAMRFSENDVRPMGR 718 Query: 684 -GKGVR 688 +GVR Sbjct: 719 TARGVR 724 >gi|72160413|ref|YP_288070.1| DNA gyrase subunit A [Thermobifida fusca YX] gi|71914145|gb|AAZ54047.1| DNA gyrase subunit A [Thermobifida fusca YX] Length = 848 Score = 385 bits (989), Expect = e-104, Method: Compositional matrix adjust. Identities = 261/770 (33%), Positives = 413/770 (53%), Gaps = 49/770 (6%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 ++ V L+ ++ YL YA+S I RA+PD+RDG KPVH+R+++AM + G + K A Sbjct: 18 IEPVDLQVEMQRSYLDYAMSVIIGRALPDVRDGLKPVHQRVLYAMYDSGYRPDRGYFKCA 77 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+V+G HPHGD ++Y++LVRLAQP+ R PL+ G GNFG+ D AAA RYTE ++ Sbjct: 78 RVVGDVMGNYHPHGDSAIYETLVRLAQPWAMRMPLVDGNGNFGSPGNDPAAAMRYTECKL 137 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 +A +L+ +D++ VDFR Y+ EPVV P++FPNLL NG+SGIAVGMAT+IP HN+ Sbjct: 138 APLAMEMLRDIDKETVDFRPNYDGRSQEPVVLPARFPNLLVNGSSGIAVGMATNIPPHNL 197 Query: 197 QEICEAALALIDNPEISIEKLLEYII----GPDFPTGGIIVESRESIVESYRLGRGGFRV 252 +E+ E +D+P+ S E+LL+ +I GPDFPT G IV R I E+YR GRG + Sbjct: 198 REVAEGVYWYLDHPDASDEELLDALIERIKGPDFPTRGRIV-GRRGIEETYRTGRGSITM 256 Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV--R 310 RA +EE RG C+VVTE+PYQV L KIAEL+ +I + D++DES+ R Sbjct: 257 RAVVEIEEDKRGRQCLVVTELPYQVNPDNLALKIAELVKEGKISGIADVKDESSGRTGQR 316 Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370 +V+ K R +++ +++ + ++ F NM L G VP+ + LD +++ W+AH+ E Sbjct: 317 LVIVLK-RDAVAKVVLNNLYKHTQLQETFGANMLALVDG-VPRTLRLDQMIRHWVAHQIE 374 Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQ 427 V+ RR+ + ++ + R IL+ LL A IDE+IA+IR + D K ++ ++ + Q Sbjct: 375 VIVRRTRYLLRKAEERAHILRALLKAIDRIDEVIALIRGSASADDAKNGLMELLAIDDVQ 434 Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487 AIL+++LR L LE Q+ SE D L+A+ + +L S ++Q I E+ E+ E + Sbjct: 435 ARAILDMQLRKLAALERQQLTSEYDELMAQIADYNEILESPERQRRIIRDELAEIVEKYG 494 Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHSVD 539 RRT E+ + + I +E I V I+ G+ R+ K Sbjct: 495 DD-----RRT---EIVPYEGDMRMEDFIAEEDIVVTITRGGYAKRTRLDNYRAQKRGGKG 546 Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLN 597 + K+ D ++ T IL + G+ Y A L L+ G + L+ Sbjct: 547 VRGAQLKQDDIVQHFFVTTTHHWILFFTNKGRVYRTKAYELPELARDSRGHHVANLVPFL 606 Query: 598 HNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---K 651 +++I YD+ L++ + G + +E + G + + ++++ + Sbjct: 607 PDEEIAQVLALRDYDAAPYLVLATRSGLVKKTKLAEFDSARSSGIIAINLREDDELIAAR 666 Query: 652 LVVKVTGDHVAVVGENRKLLIF--SIDQIPEMSRG-KGVRLQSYKDGGI---SDVICFKI 705 LV D + ++ N + + F S D + M R GV + +G DVI + Sbjct: 667 LVYPT--DDLLLISSNAQAIRFPASDDSLRPMGRATSGVIGMRFAEGDYLLSMDVI--RE 722 Query: 706 CEGLT--WIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753 EG T + + G R+ D + KRGG G L + GK + + Sbjct: 723 GEGATDVLVATEGGYAKRTPADQYP-VQKRGGKGVLTARIVESRGKLVGA 771 >gi|325292861|ref|YP_004278725.1| DNA gyrase subunit A [Agrobacterium sp. H13-3] gi|325060714|gb|ADY64405.1| DNA gyrase subunit A [Agrobacterium sp. H13-3] Length = 930 Score = 385 bits (989), Expect = e-104, Method: Compositional matrix adjust. Identities = 236/692 (34%), Positives = 374/692 (54%), Gaps = 61/692 (8%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 ++ +S+ ++ YL YA+S I RA+PD+RDG KPVHRRI++ MSE+G+D+ + K A Sbjct: 16 IEPISIIEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYGMSELGIDWNKKYVKCA 75 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+ G+V+GK HPHG+ ++YD+L R+AQ + R PLI GQGNFG+IDGD AA RYTE R+ Sbjct: 76 RVTGDVMGKFHPHGNAAIYDALARMAQDWSLRLPLIDGQGNFGSIDGDPPAAERYTECRL 135 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 + A +L +D++ VDFRD Y+ EPVV P+KFPNLL NG GIAVGMAT+IP HN+ Sbjct: 136 EKAAHSLLDDLDKETVDFRDNYDGTLHEPVVIPAKFPNLLVNGAGGIAVGMATNIPPHNL 195 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ + +ALIDNP I + +L++ I GPDFPTG +I+ R I +Y GRG +R R Sbjct: 196 SEVIDGCIALIDNPAIELLELMQIISGPDFPTGALIM-GRSGIRSAYETGRGSVIMRGRA 254 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316 +E + I++TE+PYQV K+ +IEK+AEL+ KRI + D+RDES V+ Sbjct: 255 TIEPMRGDREQIIITEVPYQVNKATMIEKMAELVKEKRIEGISDLRDESDRQGYRVVVEL 314 Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376 R + ++++ I+ + ++T F NM L+ G+ P+ M L +L+ +++ R +V+ RR+ Sbjct: 315 KRDANAEVILNQIYRYTPLQTSFGCNMVALNGGK-PEQMTLLDMLRAFVSFREDVVSRRT 373 Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP----KPVMVSR------------ 420 + ++ R +L GL I+ NIDE+I +IR+ P + +M R Sbjct: 374 KYLLRKARDRAHVLVGLAISVANIDEVIRVIRHAPDPASAREELMTRRWPAQDVESLIRL 433 Query: 421 -------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467 ++L+E Q AIL LRL L L +I EL+ + AE + +L+S Sbjct: 434 IDDPRHRINEDGTYNLSEEQARAILELRLARLTALGRDEIGDELNKIGAEISEYLEILSS 493 Query: 468 GKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNR 527 + + E+ +++ F RR+ E+ + +I +E + V +S+ Sbjct: 494 RLRIMQIVKDELIAIRDEFGTP-----RRS---EIVEGGPDMDDEDLISREDMVVTVSHL 545 Query: 528 GWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYT 574 G+I R+ + S + ++ D + A+T +L S+ G K + Sbjct: 546 GYIKRVPLTTYRAQRRGGKGRSGMATRDEDFVNRLFVANTHTPVLFFSSRGIVYKEKVWR 605 Query: 575 LPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD------STCKLLVVSSKGNAFIVEE 628 LP G S G+A+ ++ L + I T T ++ +++G + Sbjct: 606 LPIGTPQS---KGKALINMLPLEPGERITTIMPLPEDETTWETLDVMFSTTRGTVRRNKL 662 Query: 629 SEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH 660 + + R GK +K+ E L V+ D Sbjct: 663 GDFVQVNRNGKIAMKLEEEGDEILSVETCTDQ 694 >gi|326778154|ref|ZP_08237419.1| DNA gyrase, A subunit [Streptomyces cf. griseus XylebKG-1] gi|326658487|gb|EGE43333.1| DNA gyrase, A subunit [Streptomyces cf. griseus XylebKG-1] Length = 879 Score = 385 bits (989), Expect = e-104, Method: Compositional matrix adjust. Identities = 226/627 (36%), Positives = 358/627 (57%), Gaps = 34/627 (5%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 V+ V L ++ YL YA+S I RA+PD+RDG KPVHRR+++AM + G F K A Sbjct: 27 VEPVGLETEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMYDGGYRPEKGFYKCA 86 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+V+G HPHGD S+YD+LVRLAQP+ R PL+ GNFG+ D AAA RYTE +M Sbjct: 87 RVVGDVMGTYHPHGDSSIYDALVRLAQPWSLRMPLVDSNGNFGSPGNDPAAAMRYTECKM 146 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 ++ +++ +DE+ VDF+D Y+ + EP V P++FPNLL NG++GIAVGMAT+IP HN+ Sbjct: 147 MPLSMEMVRDIDEETVDFQDNYDGRNQEPTVLPARFPNLLVNGSAGIAVGMATNIPPHNL 206 Query: 197 QEICEAALALIDNPEISIEKLLEYII----GPDFPTGGIIVESRESIVESYRLGRGGFRV 252 +E+ A +++PE S E+LL+ +I GPDFPTG ++V R+ I E+YR GRG + Sbjct: 207 REVAAGAQWYLEHPEASHEELLDALIERIKGPDFPTGALVV-GRKGIEEAYRTGRGSITM 265 Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV--R 310 RA VEE+ +G C+VVTE+P+Q L +KIA+L+ ++ + D+RDE++ R Sbjct: 266 RAVVAVEEI-QGRQCLVVTELPFQTNPDNLAQKIADLVKDGKVGGIADVRDETSSRTGQR 324 Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370 +V+ K R +++ +++ +D++T F NM L G VP+ + +D ++ W+ H+ E Sbjct: 325 LVVVLK-RDAVAKVVLNNLYKHTDLQTNFGANMLALVDG-VPRTLSIDAFIRHWVTHQIE 382 Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQ 427 V+ RR+ FR++ + R IL+GLL A IDE+IA+IR + + ++ + E Q Sbjct: 383 VIVRRTRFRLRKAEERAHILRGLLKALNAIDEVIALIRRSNTVEIAREGLMGLLEIDELQ 442 Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487 +AIL ++LR L LE +I +E D L A+ + + +L S +Q ++ E+ + + F Sbjct: 443 ANAILEMQLRRLAALEHQKITAEHDELQAKINEYNEILASPAKQRAIVSEELAAIVDKFG 502 Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVD 539 RR+ D + +I +E I V IS G++ RS K Sbjct: 503 DD-----RRSQLVPF---DGDMSIEDLIAEEDIVVTISRSGYVKRTKTDDYRSQKRGGKG 554 Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEAIQLLIDLN 597 + +E D + + T +L + G+ Y A L +GR G+ + L+ Sbjct: 555 VRGTKLREDDIVDHFFVSTTHHWLLFFTNKGRVYRAKAYELPDAGRDARGQHVANLLAFQ 614 Query: 598 HNQDIVTAFV---YDSTCKLLVVSSKG 621 ++ I Y++ L++ + G Sbjct: 615 PDEKIAQILAIRDYEAVPYLILATKGG 641 >gi|114767275|ref|ZP_01446115.1| DNA gyrase subunit A [Pelagibaca bermudensis HTCC2601] gi|114540581|gb|EAU43654.1| DNA gyrase subunit A [Roseovarius sp. HTCC2601] Length = 905 Score = 385 bits (989), Expect = e-104, Method: Compositional matrix adjust. Identities = 241/677 (35%), Positives = 371/677 (54%), Gaps = 57/677 (8%) Query: 19 AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78 A+S+ ++ YL YA+S I RAIPDLRDG KPVHRRI++ + E G ++K A Sbjct: 13 AISIIDEMKSSYLDYAMSVIVSRAIPDLRDGLKPVHRRILYTLWENGQTKSKPYRKCATA 72 Query: 79 VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138 VG+V+G+ HPHGD +VYD+LVR+AQ F PLI GQGNFG++DGD AAYRYTE+R+ + Sbjct: 73 VGDVMGRYHPHGDSAVYDALVRMAQDFSMSLPLIDGQGNFGSMDGDPPAAYRYTESRLER 132 Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198 AE +L+ +D+D VDF Y E +EPVV P+++PN+L NG GIAVGMAT IP HN+ E Sbjct: 133 TAEALLEDIDKDTVDFVPNYANERNEPVVLPARYPNVLVNGAEGIAVGMATRIPPHNLGE 192 Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258 + +A LALI+NP++S E+L+EYI PDFPTGG+I+ R ++Y GRG +RA+ + Sbjct: 193 VIDATLALIENPDLSSEQLIEYIPAPDFPTGGVIL-GRSGARKAYLEGRGSVIIRAKTRI 251 Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKN 317 EE+ R + IV+ EIPYQV K+ +IE+IAE + K+I + ++DES VR+V+ K Sbjct: 252 EEIKRDRYAIVIDEIPYQVNKATMIERIAESVRDKKIEGIAHVQDESDRSGVRVVIELK- 310 Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377 R ++++ ++ + M+ F NM L+ G+ P+ + L L +L R +V+ RR++ Sbjct: 311 RDATAEVVLNQLYRFTPMQVSFGCNMLALNGGK-PEQLTLRTFLTAFLDFREDVVARRTA 369 Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE--------------------------- 410 + ++ R IL GL +A N+DE++A IR Sbjct: 370 YLLRKARERSHILCGLAVAVANVDEVVATIRASVDASEAREKLMTRRWPAHEIAPYIQLI 429 Query: 411 DKPKPVMV--SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSG 468 D P M ++L+E Q AIL LRL+ L +L ++ EL+ L + ++ +L S Sbjct: 430 DDPTHKMNEDGTYNLSETQARAILELRLQRLTQLGVKEVTDELEELAGKIKEYLEILGSR 489 Query: 469 KQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRG 528 ++ I+ E+ V++ F+ RRT + + + +IE+E + V ++ G Sbjct: 490 ERIMEIISNEMTAVRDQFAVP-----RRTEIVDWA---GDMDDEDLIEREDMVVTVTQSG 541 Query: 529 WI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL 580 +I RS K LS KE D + A+T ++L +T G Y L L Sbjct: 542 YIKRTPLADYRSQKRGGKGLSGGGLKEDDVVTQLFVANTHTQLLFFTTAGMVYKLKCWRL 601 Query: 581 LSG--RGHGEAIQLLIDLNHNQDIVTAFVYD------STCKLLVVSSKGNAFIVEESEII 632 G G+AI ++ + + D +++ +SKG+ S+ Sbjct: 602 PQGGRTSKGKAIVNILPIPQGVSVAAIMPVDRPEEDWDDLQIVFATSKGSVRRNRLSDFT 661 Query: 633 ANTRKGKTFLKVSSEEK 649 R GK +K +++ Sbjct: 662 NVMRNGKIAMKFEGDDE 678 >gi|218260370|ref|ZP_03475726.1| hypothetical protein PRABACTJOHN_01389 [Parabacteroides johnsonii DSM 18315] gi|218224561|gb|EEC97211.1| hypothetical protein PRABACTJOHN_01389 [Parabacteroides johnsonii DSM 18315] Length = 869 Score = 385 bits (989), Expect = e-104, Method: Compositional matrix adjust. Identities = 251/766 (32%), Positives = 422/766 (55%), Gaps = 49/766 (6%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 +++ ++ Y+ Y++S I RA+PD+RDGFKPVHRRI+ M+E+G +KKSARIV Sbjct: 10 INIEEEMKSAYIDYSMSVIVSRALPDVRDGFKPVHRRILFGMNELGNTSDKPYKKSARIV 69 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 GEV+GK HPHGD SVY ++VR+AQ + RY L+ GQGNFG++DGDS AA RYTEAR++++ Sbjct: 70 GEVLGKYHPHGDSSVYFAMVRMAQTWSMRYTLVDGQGNFGSVDGDSPAAMRYTEARLSKL 129 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 AE +L+ +D+D VDF+ +++ EP V P++ PNLL NG SGIAVGMAT++P+HN+ E+ Sbjct: 130 AEEMLRDIDKDTVDFQLNFDDTLKEPTVLPTRIPNLLVNGASGIAVGMATNMPTHNLSEV 189 Query: 200 CEAALALID-NPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258 + +A ID E+ + L++YI PDFPTG I + +++ GRG +R + + Sbjct: 190 LDGCMAFIDARGEMEVADLMQYIKAPDFPTGATIY-GYAGVKDAFETGRGRIILRGKAEI 248 Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKN 317 E G I++TEIPY V K+ LI+ IA+L+ KRI + ++ DES +RIV+ K Sbjct: 249 ETEGNHEK-IIITEIPYLVNKAELIKYIADLVNEKRIEGISNVNDESDRSGMRIVVDVK- 306 Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377 R + +++ ++ L+ +++ F +N L GR P+ + L ++K ++ HR EV+ RR+ Sbjct: 307 RDANSSVVLNKLYKLTALQSSFSVNNIALVNGR-PRQLNLKDLIKAFVDHRHEVVIRRTK 365 Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVDAILNL 434 + ++ + R IL+GL+IA NIDE+IAII++ P ++ RFSL+E Q AI+ + Sbjct: 366 YELRKAEERAHILEGLIIASDNIDEVIAIIKSSKSPAEAIERLMERFSLSEIQSRAIVEM 425 Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494 RLR L LE+ ++++E + + + +L + I E++E+K+ + G Sbjct: 426 RLRQLTGLEQDKLRAEYEEIEKLIAYLKEILENDDLCMKVIKDELKEIKDKY------GD 479 Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFK 546 R T ++ A + + + + + IS+ G+I R+ V + Sbjct: 480 ERKT--DIVYASEELNPEDFYADDEMIITISHMGYIKRTPLSEFRAQGRGGVGAKGSETR 537 Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQDIVT 604 + D ++ A +L+ + GK Y L + G G AIQ L+++ + D V Sbjct: 538 DEDFVEYIYPASMHATLLIFTAKGKCYWLKVFEIPEGAKNSKGRAIQNLLNIEPD-DKVN 596 Query: 605 AFV----------YDSTCKLLVVSSKGNAFIVEESEIIANTR---KGKTFLKVSSEEKMK 651 AF+ + ++ LL + KG +++++ + A +R G + + ++ + Sbjct: 597 AFIRVKKLTTDTEFINSHYLLFCTKKG---VIKKTLLEAYSRPRQNGVNAITLREDDGLI 653 Query: 652 LVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDV---ICFKIC 706 V G++ V + N + + F + + M R GVR + D +V +C K Sbjct: 654 EVCMTNGNNEVLIANRNGRAIRFHENAVRVMGRTASGVRGMTLDDDPNDEVVGMVCIKDK 713 Query: 707 EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752 E T + + + Y + N + RGG G ++GK ++ Sbjct: 714 EKETVLVVSEQGYGKRSNIEDYRITNRGGKGVKTINITEKTGKLVA 759 >gi|323345556|ref|ZP_08085779.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Prevotella oralis ATCC 33269] gi|323093670|gb|EFZ36248.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Prevotella oralis ATCC 33269] Length = 864 Score = 385 bits (989), Expect = e-104, Method: Compositional matrix adjust. Identities = 221/611 (36%), Positives = 343/611 (56%), Gaps = 26/611 (4%) Query: 6 ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65 + + T+ ++ + +++ ++ Y+ Y++S I RA+PD+RDGFKPVHRRI++ M +G Sbjct: 1 MDENQTMDQDRIMKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMLGIG 60 Query: 66 LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125 +KK AR+VGEV+GK HPHGD SVY +LVRLAQ + RY L+ GQGNFG++DGDS Sbjct: 61 NTNDKPYKKCARVVGEVLGKYHPHGDSSVYGALVRLAQDWNMRYTLVDGQGNFGSVDGDS 120 Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185 AAA RYTE R++++ E I+ +++D VD + +++ EP V P+K PNLL NG +GIAV Sbjct: 121 AAAMRYTECRLSKMGEHIMDDLEKDTVDMANNFDDTLQEPTVMPTKIPNLLVNGGNGIAV 180 Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245 GMAT+IP+HN+ E+ + A IDNP I + L+EYI PDFPTG I + + ++Y Sbjct: 181 GMATNIPTHNLNEVIDGCCAYIDNPAIDTDGLMEYIKAPDFPTGAYIY-GLQGVRDAYET 239 Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305 GRG +RA+ + EVG IV+TEIPY V K +LIE IA+L+ ++ + + DES Sbjct: 240 GRGRIVIRAKAEI-EVGENHDKIVITEIPYGVNKQQLIEYIADLVKEGKLEGISNANDES 298 Query: 306 A-EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364 + +RIV+ K R + ++++ +F ++ +++ F +N L GR P+++ L +K + Sbjct: 299 GRQGMRIVIDVK-REANANVILNKLFKMTALQSSFSVNCIALVKGR-PRLLALKDCVKYF 356 Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRF 421 + HR EV RR+ F ++ R ILKGL+IA NIDE++ IIR P + +RF Sbjct: 357 VEHRHEVTIRRTQFELKKAQERAHILKGLIIACDNIDEVVHIIRASKTPADAQKNLENRF 416 Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481 L E Q AI+++RL L L Q+ +E + L + +L + + E+ E Sbjct: 417 ELDELQSKAIVDMRLSQLTGLRMDQLHAEYEELERLIAHLQQILEDPELCKKVMKDELNE 476 Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSL 533 VKE + RRT A + +P+ + +S+ G+I R Sbjct: 477 VKEKYGDD-----RRTKIIPAEHEFNA---EDFYPNDPVVITVSHLGYIKRTPLSEFREQ 528 Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQ 591 V +E D + A +L + G+ Y L N+ G G AIQ Sbjct: 529 ARGGVGSKGARHREQDFTEFIYPATMHQTMLFFTKKGRCYWLKCYNIPEGAKDAKGRAIQ 588 Query: 592 LLIDLNHNQDI 602 L+++ + + Sbjct: 589 NLLNIESDDSV 599 >gi|53720131|ref|YP_109117.1| DNA gyrase subunit A [Burkholderia pseudomallei K96243] gi|76811820|ref|YP_334380.1| DNA gyrase subunit A [Burkholderia pseudomallei 1710b] gi|126440756|ref|YP_001059907.1| DNA gyrase subunit A [Burkholderia pseudomallei 668] gi|126453773|ref|YP_001067196.1| DNA gyrase subunit A [Burkholderia pseudomallei 1106a] gi|134277587|ref|ZP_01764302.1| DNA gyrase, A subunit [Burkholderia pseudomallei 305] gi|167720674|ref|ZP_02403910.1| DNA gyrase subunit A [Burkholderia pseudomallei DM98] gi|167739661|ref|ZP_02412435.1| DNA gyrase subunit A [Burkholderia pseudomallei 14] gi|167825268|ref|ZP_02456739.1| DNA gyrase subunit A [Burkholderia pseudomallei 9] gi|167846771|ref|ZP_02472279.1| DNA gyrase subunit A [Burkholderia pseudomallei B7210] gi|167895358|ref|ZP_02482760.1| DNA gyrase subunit A [Burkholderia pseudomallei 7894] gi|167903745|ref|ZP_02490950.1| DNA gyrase subunit A [Burkholderia pseudomallei NCTC 13177] gi|167911993|ref|ZP_02499084.1| DNA gyrase subunit A [Burkholderia pseudomallei 112] gi|167919984|ref|ZP_02507075.1| DNA gyrase subunit A [Burkholderia pseudomallei BCC215] gi|226197855|ref|ZP_03793429.1| DNA gyrase, A subunit [Burkholderia pseudomallei Pakistan 9] gi|242315131|ref|ZP_04814147.1| DNA gyrase, A subunit [Burkholderia pseudomallei 1106b] gi|254191969|ref|ZP_04898469.1| DNA gyrase, A subunit [Burkholderia pseudomallei Pasteur 52237] gi|254261157|ref|ZP_04952211.1| DNA gyrase, A subunit [Burkholderia pseudomallei 1710a] gi|52210545|emb|CAH36528.1| DNA Gyrase, subunit A [Burkholderia pseudomallei K96243] gi|76581273|gb|ABA50748.1| DNA gyrase, A subunit [Burkholderia pseudomallei 1710b] gi|126220249|gb|ABN83755.1| DNA gyrase, A subunit [Burkholderia pseudomallei 668] gi|126227415|gb|ABN90955.1| DNA gyrase, A subunit [Burkholderia pseudomallei 1106a] gi|134251237|gb|EBA51316.1| DNA gyrase, A subunit [Burkholderia pseudomallei 305] gi|157987791|gb|EDO95556.1| DNA gyrase, A subunit [Burkholderia pseudomallei Pasteur 52237] gi|225930043|gb|EEH26056.1| DNA gyrase, A subunit [Burkholderia pseudomallei Pakistan 9] gi|242138370|gb|EES24772.1| DNA gyrase, A subunit [Burkholderia pseudomallei 1106b] gi|254219846|gb|EET09230.1| DNA gyrase, A subunit [Burkholderia pseudomallei 1710a] Length = 866 Score = 385 bits (988), Expect = e-104, Method: Compositional matrix adjust. Identities = 229/621 (36%), Positives = 350/621 (56%), Gaps = 72/621 (11%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 SL + + YL YA+S I RA+PD+RDG KPVHRR++ AM E+ D+ +KKSARIV Sbjct: 11 TSLEEEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRPYKKSARIV 70 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGD +VYD++VR+AQ F RY L+ GQGNFG++DGD+AAA RYTE RM ++ Sbjct: 71 GDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAKI 130 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 +L +D++ VDF Y+ + +P++ PS+ PNLL NG+SGIAVGMAT+IP HN+ E+ Sbjct: 131 GHELLADIDKETVDFGPNYDGSEMQPLILPSRIPNLLINGSSGIAVGMATNIPPHNLNEV 190 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 +A L L++NP+ S+++L+E I PDFPT GII + + YR GRG +RA E Sbjct: 191 VDACLYLLNNPQASVDELIEIIPAPDFPTAGIIY-GVAGVRDGYRTGRGRVVMRAATHFE 249 Query: 260 EVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318 E+ RG I+V E+PYQV K L+E+IAEL+ K++ + DIRDES + V+ R Sbjct: 250 EIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKR 309 Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378 P++++ +++ + ++ F +NM L + P+++ L IL+ +L+HRREVL RR+ + Sbjct: 310 GEVPEVVLNNLYKATQLQDTFGMNMVAL-VDNQPKLLNLREILQCFLSHRREVLTRRTVY 368 Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV-----------------MVSR- 420 ++ R +L+GL +A NIDE IAII+ P P+ M++R Sbjct: 369 ELRKARERGHVLEGLAVALANIDEFIAIIKAAPTP-PIAKQELMAKSWDSSLVRDMLTRA 427 Query: 421 -----------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451 + L++ Q IL +RL+ L LE+ +I E Sbjct: 428 ETENAAAGGRDAYRPEGLSPAFGMQGDGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEY 487 Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511 +++A+ + +L ++ I E+ +VK F G R + E++ + T Sbjct: 488 RDVMAQIADLLDILARPERITTLIGDELTQVKAEF------GDARRSKIELNATELNT-- 539 Query: 512 QAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRI 563 + +I + + V +S+ G++ R+ K A KE D ++ A+T D I Sbjct: 540 EDLITPQDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYI 599 Query: 564 LLLSTDG-----KAYTLPAGN 579 L S G K Y +P G+ Sbjct: 600 LCFSNRGRVYWVKVYEVPQGS 620 >gi|48478487|ref|YP_024193.1| DNA gyrase subunit A [Picrophilus torridus DSM 9790] gi|48431135|gb|AAT44000.1| DNA gyrase subunit A [Picrophilus torridus DSM 9790] Length = 789 Score = 385 bits (988), Expect = e-104, Method: Compositional matrix adjust. Identities = 237/685 (34%), Positives = 397/685 (57%), Gaps = 42/685 (6%) Query: 26 LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85 ++ YL YA+S I RAIPD+RDG KPV RRII++M E+ L+ +KKSARIVGE +GK Sbjct: 9 IKNSYLDYAMSVIVSRAIPDVRDGLKPVQRRIIYSMYELNLNHDKPYKKSARIVGETMGK 68 Query: 86 LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145 HPHGD ++YD+L R++Q F RYPL+ GQGNFG+IDGD+ AA RYTEAR+ ++AE +++ Sbjct: 69 YHPHGDSAIYDALARMSQDFSLRYPLVDGQGNFGSIDGDAPAAMRYTEARLARIAEEMIR 128 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 +D++ V F ++ +EPV FPSK P LL NGTSGIAVGMAT++ HN+ E+C+A Sbjct: 129 DIDKETVPFMPNFDGSLNEPVYFPSKIPQLLINGTSGIAVGMATNMLPHNLNEVCDAIKY 188 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265 ID+ + S+ LL++I GPDFP GGII +++ +++ Y+ G G +V R +E + Sbjct: 189 KIDHEDSSLYDLLKFIKGPDFPGGGIIYRTKD-MIDIYKTGHG--KVICRGSIEAEDKR- 244 Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKNRSLDPDL 324 I++ +PY + K++ I+ +A L+ +I + DI+DES + +RIV+ K DL Sbjct: 245 --IIIKSLPYGLNKAQYIQDLANLVNNDQINNISDIKDESDRNGIRIVIKVKGHDR-IDL 301 Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384 ++ ++ + +ET + N++ + VP VM L+ ++K ++ R +V+ +RS + ++ ++ Sbjct: 302 VVNQLYEKTQLETSISVT-NLVLLDNVPVVMNLEDLIKNFIGFRLDVIKKRSEYDLKKLN 360 Query: 385 RRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAILNLRLRSLRK 441 R+ IL GLLIA NID +I IIR+ + + ++ SLTE Q +AIL++RL+ L Sbjct: 361 ERMHILNGLLIALNNIDLVIKIIRSSSDVNSARSSLIKELSLTEAQANAILDMRLQRLTA 420 Query: 442 LEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC- 500 LE ++K E+D + + E + ++N+ + N + E+ E+K+ + RRRT Sbjct: 421 LEISKLKEEIDEINKKIEYLSDVVNNENTRKNVLKAELDEIKKQYG-----DRRRTEVIE 475 Query: 501 -EVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSVDLSA-----LHFKEGDSLK 552 E+SR D ++ +I E +++S +G ++ SL + + ++ DS+K Sbjct: 476 GEISRRD----EEDLIPNEESVIILSEKGLLKRVSLDEYKSQRRGGRGIITNTRDNDSVK 531 Query: 553 IALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV 607 + D + + G KAY + + + G + + LN N+ I Sbjct: 532 SVVSCMAHDTLYFFTNTGRVLKEKAYRIEKRD---RKALGVSGNKFLKLNDNEIIRQIIK 588 Query: 608 YDSTCKLLVVSSKGNAFIVEE--SEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVV 664 + L++ N FI + SEI+ + G + +++ +++ V +++G + V Sbjct: 589 SPENLEDLLIIVTKNGFIKKTNISEILDMRKSGIKIINLANNDEVVSVSEISGSSKIFVA 648 Query: 665 GENRKLLIFSIDQIPEMSR-GKGVR 688 N K +F D++P SR +GV+ Sbjct: 649 ASNGKAAVFLSDEVPLTSRSSRGVK 673 >gi|157964271|ref|YP_001499095.1| DNA gyrase subunit A [Rickettsia massiliae MTU5] gi|157844047|gb|ABV84548.1| DNA gyrase subunit A [Rickettsia massiliae MTU5] Length = 906 Score = 385 bits (988), Expect = e-104, Method: Compositional matrix adjust. Identities = 249/719 (34%), Positives = 391/719 (54%), Gaps = 77/719 (10%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 N+ V++ ++ YL YA+S I RAIPD+RDG KPVHRRII++M E G ++KS Sbjct: 9 NLVPVNIEDEMKVSYLDYAMSVIVSRAIPDVRDGLKPVHRRIIYSMHEAGNHASKPYRKS 68 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 ARIVG+V+GK HPHGD ++YDSLVR+AQ F R PL+ GQGNFG++DGD+AAA RYTE+R Sbjct: 69 ARIVGDVMGKYHPHGDSAIYDSLVRMAQDFSLRLPLVDGQGNFGSMDGDAAAAMRYTESR 128 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 M +V+ +++ +D++ V F Y+ + EP V P+ FPNLL NG+ GIAVGMAT+IP HN Sbjct: 129 MAKVSHKLVEDIDKETVSFNPNYDGSEEEPSVLPAMFPNLLVNGSGGIAVGMATNIPPHN 188 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 + E+ +A IDN +I I LLE + GPDFPTG +I+ I +Y GRG +R R Sbjct: 189 LGEVIDACCLYIDNNDIEILDLLEVVKGPDFPTGSMIL-GISGIRSAYLTGRGSIIMRGR 247 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314 +E +G I++TEIPY V K+RLIEKIAE++ KRI + D+RDES ++ VRI + Sbjct: 248 AEIENIGNNRQAIIITEIPYMVNKARLIEKIAEMVKEKRIEGISDLRDESNKNGVRIFIE 307 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K + + ++++ I+ + ++T F + M L G +P+VM L ++ +++ R V+ Sbjct: 308 LK-KDVVAEVVLNQIYACTQLQTSFGVIMLALKDG-LPKVMNLKEVIAAFVSFREVVITN 365 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP----KPVMVSRF--------- 421 R+ + + R IL GL IA NIDEII II+ + P + +M ++ Sbjct: 366 RTIYLLNKARDRAHILLGLTIAVSNIDEIIRIIKASNDPNAAKQELMACQWEALNILPLV 425 Query: 422 ---------------SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466 + TE Q AIL +RL+ L +E+ +++ +L NL E + ++L Sbjct: 426 KLVDDKAMLNEQGKCNFTEVQAKAILEMRLQRLTAMEKNKLEEDLKNLATEITEYLNILG 485 Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526 S + + E+ +VKE F+ R T E D+ + +I++E + V ++ Sbjct: 486 SRTRLLEILKAELIKVKEEFATP------RLTSIEFGEFDQDI--EDLIQREEMVVTVTL 537 Query: 527 RGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL--- 575 G+I R+ K S L ++ D T +L S G+ Y+L Sbjct: 538 GGYIKRVPLSSYRAQKRGGKGRSGLSMRDEDITTQVFVGSTHTPMLFFSNIGQVYSLKLY 597 Query: 576 ------------PAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNA 623 P N+L + + E I ++ L NQD ++ ++KGN Sbjct: 598 KLPLSNPQGKGRPMVNILPLKAN-EYITNIMPLPENQD------ERDNLNIMFATAKGN- 649 Query: 624 FIVEESEIIANTR---KGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQI 678 + S+++A + GK +++ ++K+ V D H+ + + K L F+++ + Sbjct: 650 --IRRSDLLAFKKLQSNGKIAIRLDEDDKLIDVKPCKEDEHILLATKAGKALRFAVESL 706 >gi|116252153|ref|YP_767991.1| DNA gyrase subunit A [Rhizobium leguminosarum bv. viciae 3841] gi|115256801|emb|CAK07891.1| putative DNA gyrase subunit A [Rhizobium leguminosarum bv. viciae 3841] Length = 945 Score = 385 bits (988), Expect = e-104, Method: Compositional matrix adjust. Identities = 244/712 (34%), Positives = 382/712 (53%), Gaps = 63/712 (8%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 ++ +S+ ++ YL YA+S I RA+PD+RDG KPVHRRI++ MSE+G+D+ + K A Sbjct: 16 IEPISIMEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYGMSELGIDWNKKYVKCA 75 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+ G+V+GK HPHG+ ++YD+L R+AQP+ R PLI GQGNFG++DGD AA RYTE R+ Sbjct: 76 RVTGDVMGKFHPHGNSAIYDALARMAQPWSLRLPLIDGQGNFGSVDGDPPAAERYTECRL 135 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 + A +L +D++ VDFRD Y+ SEPVV P+KFPNLL NG GIAVGMAT+IP HN+ Sbjct: 136 EKAAHSLLDDLDKETVDFRDNYDGTLSEPVVVPAKFPNLLVNGAGGIAVGMATNIPPHNL 195 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ + +ALID+P I + +L++ I GPDFPTG I+ R I +Y GRG +R Sbjct: 196 SEVIDGCVALIDDPAIELPELMQIIPGPDFPTGAKIL-GRAGIRSAYETGRGSVIMRGVA 254 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316 +E + I++TEIPYQV K+ +IEK+AEL+ KRI + D+RDES V+ Sbjct: 255 AIEPMRGDREQIIITEIPYQVNKATMIEKMAELVRDKRIEGISDLRDESDRQGYRVVVEL 314 Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376 R + ++++ ++ + ++T F NM L+ G+ Q+ LD +L+ +++ R EV+ RR+ Sbjct: 315 KRDANAEVILNQLYRYTPLQTSFGCNMVALNGGKPEQLTLLD-MLRAFVSFREEVVSRRT 373 Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP----VMVSR------------ 420 F ++ R +L GL IA NIDE+I +IR P+ +M R Sbjct: 374 KFLLRKARDRAHVLVGLAIAVANIDEVIRVIRQAPDPQSAREELMTRRWPAEDVESLIRL 433 Query: 421 -------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467 ++L+E Q AIL LRL L L +I EL+ + E + +L+S Sbjct: 434 IDDPRHRINDDLTYNLSEEQARAILELRLARLTALGRDEIGDELNKIGEEIKDYLDILSS 493 Query: 468 GKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNR 527 + + E+ V++ F RRT E+ + +I +E + V +S+ Sbjct: 494 RVRIQTIVKDELIAVRDEFGTP-----RRT---EIVDGGLEMDDEDLIAREDMVVTVSHL 545 Query: 528 GWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYT 574 G+I R+ + S + ++ D + +T +L S+ G K + Sbjct: 546 GYIKRVPLTTYRAQRRGGKGRSGMTTRDEDFVSRLFVVNTHTPVLFFSSRGIVYKEKVWR 605 Query: 575 LPAGNLLSGRGHGEAIQLLIDLNHNQDIVT--AFVYDSTC----KLLVVSSKGNAFIVEE 628 LP G S G+A+ ++ L + I T D T ++ +++G + Sbjct: 606 LPIGTPTS---RGKALINMLPLAPGERITTILPLPEDETSWDNLDVMFSTTRGTVRRNKL 662 Query: 629 SEIIANTRKGKTFLKVSSEEKMKLVVKVT--GDHVAVVGENRKLLIFSIDQI 678 S+ + R GK +K+ E L V+ D V + + + FS+D + Sbjct: 663 SDFVQVNRNGKIAMKLEEEGDEILSVETCTEDDDVLLTTALGQCIRFSVDDV 714 >gi|220930840|ref|YP_002507749.1| DNA gyrase subunit alpha [Clostridium cellulolyticum H10] gi|220001168|gb|ACL77769.1| DNA gyrase, A subunit [Clostridium cellulolyticum H10] Length = 840 Score = 385 bits (988), Expect = e-104, Method: Compositional matrix adjust. Identities = 231/654 (35%), Positives = 380/654 (58%), Gaps = 37/654 (5%) Query: 9 SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68 ++ + E+ + + + +++ ++ YA+S I +RA+PD+RDG KPVHRRI++ M G Sbjct: 2 ADEIREQKIIPIDIESEMKKSFIDYAMSVIIDRALPDVRDGLKPVHRRILYTMFTSGFTP 61 Query: 69 GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128 ++KS VGE + HPHGD +VYDSLVR+AQ F R+PL+ G GNFG+ DGDSAAA Sbjct: 62 EKPYRKSVATVGEALKSYHPHGDAAVYDSLVRMAQDFSLRHPLVDGHGNFGSRDGDSAAA 121 Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188 RYTEAR+ +++ +L +++D VDF+ ++E + EPVV PS+FPNLL NG+SGIAVGMA Sbjct: 122 MRYTEARLAKISMEMLADINKDTVDFKPNFDEHEVEPVVLPSRFPNLLVNGSSGIAVGMA 181 Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248 T+IP HN+ E + A++DNPEI+I++L++YI GPDFPT I+ R I E+++ GRG Sbjct: 182 TNIPPHNLGETIDGICAVLDNPEITIDELMKYIKGPDFPTAAKIIGKR-GIREAFKTGRG 240 Query: 249 GFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-- 306 VR+ +EE+ I++TEIPY V K+RL+EKIA+L+ KRI + I+DES Sbjct: 241 KLVVRSEAVIEEMHGNRHRIIITEIPYLVNKARLVEKIAQLVKDKRIDGISFIQDESGRE 300 Query: 307 EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL----SMGRVPQVMPLDGILK 362 E VRIV+ K R +P++++ ++ + ++ F +NM + P+V+ L I+ Sbjct: 301 EPVRIVIDLK-RDANPNVVLNQLYKNTQLQESFSVNMVAIVPTEDKMYEPRVLNLRQIID 359 Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVS 419 ++AH+ +V+ RR+ F + + R IL+GL A ++DE+I IRN E K + Sbjct: 360 YYIAHQEDVIRRRTKFELDKAEARAHILEGLKKALDHLDEVIKTIRNSKTEAIAKENLSE 419 Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479 RF ++ Q AI+++RL L LE ++++E + LL + + +L + I E+ Sbjct: 420 RFGFSDKQAQAIVDMRLGRLTGLEREKLETEYNELLEKIKYYKDVLANEILVHQIIKDEL 479 Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539 +K ++ RRT ++ + + +I++E + +++ G+I+ L + + Sbjct: 480 SVIKNKYADE-----RRT---KIEIDEDEIDIEDLIQEEESVITMTHFGYIKRLPADTYK 531 Query: 540 --------LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEA 589 + L +E D +K T I+ + G+ Y L A + SGR G A Sbjct: 532 SQRRGGKGIIGLSTREEDFVKNLFVTSTHHFIMFFTNKGRVYRLKAYEIPESGRQAKGTA 591 Query: 590 IQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIA--NTRKG 638 I L+ L+ ++ + T Y L++ + G +V++++++ N RKG Sbjct: 592 IVNLLQLDGDEKVTTVIPIQEYKEGLYLIMATKNG---LVKKTDLMEYDNIRKG 642 >gi|171316171|ref|ZP_02905395.1| DNA gyrase, A subunit [Burkholderia ambifaria MEX-5] gi|171098680|gb|EDT43475.1| DNA gyrase, A subunit [Burkholderia ambifaria MEX-5] Length = 867 Score = 385 bits (988), Expect = e-104, Method: Compositional matrix adjust. Identities = 233/620 (37%), Positives = 346/620 (55%), Gaps = 70/620 (11%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 SL + YL YA+S I RA+PD+RDG KPVHRR++ AM E+ D+ A+KKSARIV Sbjct: 11 TSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRAYKKSARIV 70 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGD +VYD++VR+AQ F RY LI GQGNFG+IDGD+AAA RYTE RM ++ Sbjct: 71 GDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLIDGQGNFGSIDGDNAAAMRYTEIRMAKI 130 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 +L +D++ VDF Y+ + +P V PS+ PNLL NG+SGIAVGMAT+IP HN+ E+ Sbjct: 131 GHELLADIDKETVDFEPNYDGNEMQPAVLPSRIPNLLINGSSGIAVGMATNIPPHNLNEV 190 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 +A L++N + +I++L+E I PDFPT GII + + YR GRG +RA E Sbjct: 191 VDACQHLLNNADATIDELIEIIPAPDFPTAGIIY-GVAGVRDGYRTGRGRVVMRATTHFE 249 Query: 260 EVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318 E+ RG I+V E+PYQV K L+E+IAEL+ K++ + DIRDES + V+ R Sbjct: 250 EIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKR 309 Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378 P++++ +++ + ++ F +NM L G+ P+++ L IL+ +L+HRREVL RR+ + Sbjct: 310 GEVPEVVLNNLYKATQLQDTFGMNMVALVDGQ-PKLLNLKEILQCFLSHRREVLTRRTIY 368 Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---------KPV-------MVSR-- 420 ++ R +L+GL +A NIDE IAII+ P KP M++R Sbjct: 369 ELRKARERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMAKPWDSSLVRDMLTRAE 428 Query: 421 ----------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELD 452 + L++ Q IL +RL+ L LE+ +I E Sbjct: 429 TENASAGGRSAYRPEGLNPAFGMQTDGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEYR 488 Query: 453 NLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ 512 ++A+ + +L ++ I E+ VK F G R + E++ + T + Sbjct: 489 EVMAQIADLLDILARPERITTMIGDELTSVKAEF------GDARRSRIELNATELNT--E 540 Query: 513 AMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRIL 564 +I + + V +S+ G++ R+ K A KE D ++ A+T D IL Sbjct: 541 DLITPQDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYIL 600 Query: 565 LLSTDG-----KAYTLPAGN 579 S G K Y +P G+ Sbjct: 601 CFSNRGRVYWVKVYEVPQGS 620 >gi|3550423|gb|AAC34892.1| DNA gyrase A subunit [Methylovorus sp. SS1] Length = 846 Score = 385 bits (988), Expect = e-104, Method: Compositional matrix adjust. Identities = 225/602 (37%), Positives = 348/602 (57%), Gaps = 57/602 (9%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 +SL + YL YA+S I RA+PD+RDG KPVHRR++ AM E+ D+ +KKSARIV Sbjct: 11 ISLEDEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELSNDWNRPYKKSARIV 70 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGD +VYD++VR+AQ F RY L+ GQGNFG++DGD+AAA RYTE RM ++ Sbjct: 71 GDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAKI 130 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A +L +D++ VDF Y+ + EP++ P++ PNLL NG+SGIAVGMAT+IP HN+ E+ Sbjct: 131 AHELLADIDKETVDFGPNYDGSEHEPLIMPARIPNLLINGSSGIAVGMATNIPPHNLNEV 190 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 +A LAL+ NPE ++++L+E I PDFPT GII + + E+YR GRG +R R VE Sbjct: 191 VDACLALLKNPETTVDELIEIIPAPDFPTAGIIYGTM-GVKEAYRTGRGRVVMRGRTHVE 249 Query: 260 EVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318 ++ +G+ +++ E+PYQV K LIEKIAEL+ K+I + D+RDES + V+ R Sbjct: 250 DMEKGNRQALIIDELPYQVNKKSLIEKIAELVNEKKIEGISDLRDESDKSGMRVVIELKR 309 Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378 P++++ +++ + ++ F +NM L G+ P+++ L +L+ + HRREV+ RR+ F Sbjct: 310 GEVPEVILNNLYKQTQLQDTFGMNMVALLDGQ-PRLLNLKQMLEAFFGHRREVITRRTVF 368 Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR--------------- 420 + +R +L+GL +A N+DE+IA+I+ P K ++SR Sbjct: 369 ELGKAERG-HVLEGLAVALANVDEMIALIKAAPTPPEAKKSLMSRTWTSPVVEEMLKRAA 427 Query: 421 ------------FSLTEN-------QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKI 461 F +T N Q IL +RL+ L LE+ +I +E ++ + Sbjct: 428 MEASRPEGLSVDFGMTPNGYRLSDVQAQEILQMRLQRLTGLEQDKIVNEYKEVMDVIADL 487 Query: 462 DSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPIT 521 +L ++ I E+ +++ F S R+ V A +L+ +I + + Sbjct: 488 LDILAKPERVTQMIVDELATIRQQFGDSC-----RSEI--VHNAQDLSLED-LITPQDVV 539 Query: 522 VVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573 V +S+ G++ R+ + A KE D + A+T D IL S+ G+ Y Sbjct: 540 VTLSHTGYVKSQPLDEYRAQRRGGRGKQATATKEDDFIDKMFVANTHDYILCFSSRGRVY 599 Query: 574 TL 575 L Sbjct: 600 WL 601 >gi|121598728|ref|YP_993880.1| DNA gyrase subunit A [Burkholderia mallei SAVP1] gi|238561686|ref|ZP_04609705.1| DNA gyrase, A subunit [Burkholderia mallei GB8 horse 4] gi|251766982|ref|ZP_04819906.1| DNA gyrase, A subunit [Burkholderia mallei PRL-20] gi|254203931|ref|ZP_04910291.1| DNA gyrase, A subunit [Burkholderia mallei FMH] gi|254208911|ref|ZP_04915259.1| DNA gyrase, A subunit [Burkholderia mallei JHU] gi|121227538|gb|ABM50056.1| DNA gyrase, A subunit [Burkholderia mallei SAVP1] gi|147745443|gb|EDK52523.1| DNA gyrase, A subunit [Burkholderia mallei FMH] gi|147750787|gb|EDK57856.1| DNA gyrase, A subunit [Burkholderia mallei JHU] gi|238524138|gb|EEP87573.1| DNA gyrase, A subunit [Burkholderia mallei GB8 horse 4] gi|243064219|gb|EES46405.1| DNA gyrase, A subunit [Burkholderia mallei PRL-20] Length = 888 Score = 385 bits (988), Expect = e-104, Method: Compositional matrix adjust. Identities = 226/610 (37%), Positives = 346/610 (56%), Gaps = 67/610 (10%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 SL + + YL YA+S I RA+PD+RDG KPVHRR++ AM E+ D+ +KKSARIV Sbjct: 33 TSLEEEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRPYKKSARIV 92 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGD +VYD++VR+AQ F RY L+ GQGNFG++DGD+AAA RYTE RM ++ Sbjct: 93 GDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAKI 152 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 +L +D++ VDF Y+ + +P++ PS+ PNLL NG+SGIAVGMAT+IP HN+ E+ Sbjct: 153 GHELLADIDKETVDFGPNYDGSEMQPLILPSRIPNLLINGSSGIAVGMATNIPPHNLNEV 212 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 +A L L++NP+ S+++L+E I PDFPT GII + + YR GRG +RA E Sbjct: 213 VDACLYLLNNPQASVDELIEIIPAPDFPTAGIIY-GVAGVRDGYRTGRGRVVMRAATHFE 271 Query: 260 EVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318 E+ RG I+V E+PYQV K L+E+IAEL+ K++ + DIRDES + V+ R Sbjct: 272 EIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKR 331 Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378 P++++ +++ + ++ F +NM L + P+++ L IL+ +L+HRREVL RR+ + Sbjct: 332 GEVPEVVLNNLYKATQLQDTFGMNMVAL-VDNQPKLLNLREILQCFLSHRREVLTRRTVY 390 Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV-----------------MVSR- 420 ++ R +L+GL +A NIDE IAII+ P P+ M++R Sbjct: 391 ELRKARERGHVLEGLAVALANIDEFIAIIKAAPTP-PIAKQELMAKSWDSSLVRDMLTRA 449 Query: 421 -----------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451 + L++ Q IL +RL+ L LE+ +I E Sbjct: 450 ETENAAAGGRDAYRPEGLSPAFGMQGDGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEY 509 Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511 +++A+ + +L ++ I E+ +VK F G R + E++ + T Sbjct: 510 RDVMAQIADLLDILARPERITTLIGDELTQVKAEF------GDARRSKIELNATELNT-- 561 Query: 512 QAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRI 563 + +I + + V +S+ G++ R+ K A KE D ++ A+T D I Sbjct: 562 EDLITPQDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYI 621 Query: 564 LLLSTDGKAY 573 L S G+ Y Sbjct: 622 LCFSNRGRVY 631 >gi|42518090|ref|NP_964020.1| DNA gyrase subunit A [Lactobacillus johnsonii NCC 533] gi|41582374|gb|AAS07986.1| DNA gyrase subunit A [Lactobacillus johnsonii NCC 533] gi|329666397|gb|AEB92345.1| DNA gyrase subunit A [Lactobacillus johnsonii DPC 6026] Length = 829 Score = 385 bits (988), Expect = e-104, Method: Compositional matrix adjust. Identities = 239/720 (33%), Positives = 386/720 (53%), Gaps = 53/720 (7%) Query: 6 ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65 ++N N + ++ V L + +L YA+S I RA+PD+RDG KPV RRI++ M E+G Sbjct: 1 MANENQPQDHRIRNVDLTHTMRTSFLDYAMSVIVARALPDVRDGLKPVQRRILYGMHELG 60 Query: 66 LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125 + +KKSARIVGEV+GK HPHGD S+Y ++ +AQ F RY L+ G GNFG++DGD Sbjct: 61 VTPDKQYKKSARIVGEVMGKFHPHGDSSIYLAMAHMAQDFSYRYMLVDGHGNFGSVDGDE 120 Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185 AA RYTEA+M+++A +L+ ++++ +D++ Y++ ++EPVV P++ PNLL NG SGIAV Sbjct: 121 PAAMRYTEAKMSKIAVEMLRDINKETIDWQRNYDDTENEPVVLPARIPNLLVNGASGIAV 180 Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245 GM T+IP HN+ E+ L+DNP+++ + L++ I GPDFPTGGI++ R I +Y Sbjct: 181 GMTTNIPPHNLAEVIRGIHMLMDNPDVTTKDLMKVIPGPDFPTGGIVM-GRGGIYRAYET 239 Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305 G+G VRA+ +E G IVVTE+PY V K+ L++KIA+L K I + +RDES Sbjct: 240 GKGNIVVRAKTEIETEKNGRERIVVTELPYLVNKAELVKKIADLAREKTIDGITGVRDES 299 Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365 + + R +++ ++F + M+ F +NM + G P + L +L+ +L Sbjct: 300 DQTGMRITIDIRRDASASVVLNNLFKETQMQANFGMNMVAIVNG-APHFLTLKQMLEYYL 358 Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFS 422 H+ +V+ RR+ F ++ + R IL GL IA +IDEII IIR N D K ++ F Sbjct: 359 HHQEDVITRRTKFELKKAEARAHILAGLRIALDHIDEIIKIIRGSQNSDIAKAQLIQNFG 418 Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482 L + Q AIL++RL L LE +I++E +L A+ +L ++ I E+ ++ Sbjct: 419 LDDRQSQAILDMRLVRLTGLERDKIEAEYQDLQAKIADYKDILAKPERIDEIIYNELLDI 478 Query: 483 KEIFSKSTDLGRRRTTFCE---VSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539 ++ F RRT E VS D + +IE++ + + +++ G+I+ + + Sbjct: 479 QKRFGDD-----RRTKIAEGEAVSIED-----EDLIEQKDVLLTLTHNGYIKRMPADEFK 528 Query: 540 --------LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LP 576 + + ++ D + + + T D +L + GK Y+ LP Sbjct: 529 VQNRGGRGIKGMGVQDDDFINHLIFSSTHDFLLFFTNLGKVYSKKAYEIPEFGRNAKGLP 588 Query: 577 AGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR 636 NLL GE IQ +I++ D L V+ G + SE R Sbjct: 589 IVNLLE-LDKGEKIQAVINVPEGAD---------DNYLFFVTKMGTVKRTKVSEFQNIRR 638 Query: 637 KGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSR-GKGVRLQSYKD 694 G L + +++ V+ G ++G + + F+ + M R GVR + +D Sbjct: 639 SGLIALTLRDGDELNNVLTTDGKQNILIGTHLGYAVTFNEKDVRSMGRTAAGVRGINLRD 698 Score = 38.5 bits (88), Expect = 4.3, Method: Compositional matrix adjust. Identities = 44/161 (27%), Positives = 68/161 (42%), Gaps = 6/161 (3%) Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHN 599 L AL ++GD L L IL+ + G A T ++ S G A I+L N Sbjct: 641 LIALTLRDGDELNNVLTTDGKQNILIGTHLGYAVTFNEKDVRS-MGRTAAGVRGINLRDN 699 Query: 600 QDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKV 656 +V + + + ++LV+S KG SE R GK + EK + V V Sbjct: 700 DYVVGSDILEPDSEVLVISEKGYGKRTAASEYPVKGRGGKGIKTANITEKNGPLAGVTVV 759 Query: 657 TGDH-VAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDG 695 GD + ++ ++ F +D + + R GVRL DG Sbjct: 760 NGDEDIMLITSAGVMIRFDVDDVSQTGRATLGVRLIKVDDG 800 >gi|328883697|emb|CCA56936.1| DNA gyrase subunit A [Streptomyces venezuelae ATCC 10712] Length = 876 Score = 385 bits (988), Expect = e-104, Method: Compositional matrix adjust. Identities = 231/630 (36%), Positives = 361/630 (57%), Gaps = 40/630 (6%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 ++ V L ++ YL YA+S I RA+PD+RDG KPVHRR+++AM + G F K A Sbjct: 20 IEPVGLETEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMYDGGYRPEKGFYKCA 79 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+V+G HPHGD S+YD+LVRLAQP+ R PL+ GNFG+ D AAA RYTE ++ Sbjct: 80 RVVGDVMGTYHPHGDSSIYDALVRLAQPWSMRMPLVDSNGNFGSPGNDPAAAMRYTECKL 139 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 ++ +L+ +DE+ VDF+D Y+ + EP V PS+FPNLL NG++GIAVGMAT+IP HN+ Sbjct: 140 MTLSMEMLRDIDEETVDFQDNYDGRNQEPTVLPSRFPNLLINGSAGIAVGMATNIPPHNL 199 Query: 197 QEICEAALALIDNPEISIEKLLEYII----GPDFPTGGIIVESRESIVESYRLGRGGFRV 252 +E+ A +++P+ S E+LL+ +I GPDFPTG ++V R+ I E+YR GRG + Sbjct: 200 REVAAGAQWALEHPDASHEELLDALIERIKGPDFPTGALVV-GRKGIEEAYRTGRGSITM 258 Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV--R 310 RA VEE+ C+VVTE+PYQ L +KIA+L+ +I + D+RDE++ R Sbjct: 259 RAVVEVEEI-HNRQCLVVTELPYQTNPDNLAQKIADLVKDGKIGGIADVRDETSSRTGQR 317 Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370 +V+ K R +++ +++ +D++T F NM L G VP+ + LD ++ W+ H+ E Sbjct: 318 LVIVLK-RDAVAKVVLNNLYKHTDLQTNFGANMLALVDG-VPRTLSLDAFIRHWVTHQIE 375 Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR------FSLT 424 V+ RR+ FR++ + R IL+GLL A IDE+IA+IR + + V V+R + Sbjct: 376 VIVRRTRFRLRKAEERAHILRGLLKALDAIDEVIALIR---RSETVEVARGGLMDLLQID 432 Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484 E Q +AIL ++LR L LE +I +E D L A+ + +++L S ++Q ++ E+ + E Sbjct: 433 EIQANAILEMQLRRLAALERQKIVAEHDELQAKINEYNAILASPERQRAIVSEELAALVE 492 Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSH 536 F RR+ D + +I +E I V IS G++ RS K Sbjct: 493 KFGDD-----RRSKLVPF---DGDMSIEDLIAEEDIVVTISRGGYVKRTKTEDYRSQKRG 544 Query: 537 SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEAIQLLI 594 + K+ D + + T +L + G+ Y + A L +GR G+ + L+ Sbjct: 545 GKGVRGTKLKQDDIVDHFFVSTTHHWLLFFTNKGRVYRVKAYELPDAGRDARGQHVANLL 604 Query: 595 DLNHNQDIVTAFV---YDSTCKLLVVSSKG 621 ++ I Y++ L++ + G Sbjct: 605 AFQPDEQIAQILAIRDYEAAPYLVLATKAG 634 >gi|182679031|ref|YP_001833177.1| DNA gyrase, A subunit [Beijerinckia indica subsp. indica ATCC 9039] gi|182634914|gb|ACB95688.1| DNA gyrase, A subunit [Beijerinckia indica subsp. indica ATCC 9039] Length = 929 Score = 385 bits (988), Expect = e-104, Method: Compositional matrix adjust. Identities = 262/725 (36%), Positives = 390/725 (53%), Gaps = 64/725 (8%) Query: 4 DNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63 D+ N ++K VSL ++ YLAYA+S I RA+PD+RDG KPVHRRI+ +M E Sbjct: 3 DHDENGQGPGGSDIKPVSLSDEMQSSYLAYAMSVIVSRALPDVRDGLKPVHRRILFSMHE 62 Query: 64 MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123 + KSARIVG+V+GK HPHGD ++YD+LVR+AQ F R PLI GQGNFG++DG Sbjct: 63 NNHTPDRPYVKSARIVGDVMGKYHPHGDTAIYDALVRMAQGFSMRLPLIDGQGNFGSVDG 122 Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183 D AA RYTE+R+ + A +L +D D VDF+ Y+ ++ EPVV P++FPNLL NG GI Sbjct: 123 DPPAAMRYTESRLARPALALLADIDSDTVDFQPNYDGKEHEPVVLPARFPNLLVNGAGGI 182 Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243 AVGMAT+IP HN+ E+ +A +ALIDNPE+SIE+L + GPDFPTGG I+ R I +Y Sbjct: 183 AVGMATNIPPHNLGEVIDAVIALIDNPEMSIEELTAIVPGPDFPTGGSIL-GRAGIRSAY 241 Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303 GRG +RA+ +EE+ ++VTEIPYQV K+ LIEKIAEL+ KRI + D+RD Sbjct: 242 ATGRGSVLMRAKIEIEEIREKREALIVTEIPYQVNKATLIEKIAELVREKRIEGISDLRD 301 Query: 304 ES-AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362 ES + +RIV+ K R PD+++ ++ + +++ FP NM L+ GR P+ + L L Sbjct: 302 ESDRQGMRIVIEIK-RDAVPDIVLNQLWRYTALQSSFPCNMIALNGGR-PETLTLRDFLT 359 Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE------------ 410 ++ R EV+ RR+ + + + GL IA NIDE+I +IR Sbjct: 360 AFIDFREEVVTRRTKYLLGKARDAAHLQVGLAIAVANIDEVIRLIRTSADAAEARAALCA 419 Query: 411 -DKPKPVMV--------SRFSLT--------ENQVDAILNLRLRSLRKLEEYQIKSELDN 453 D P M R +LT E Q AIL LRL+ L L +I L+ Sbjct: 420 RDWPARDMAPLIALIADPRHTLTPEGTIRLSEAQARAILELRLQRLTALGRDEIAENLNK 479 Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513 L AE +L S + + I E+ VKE + RRT + +D + Sbjct: 480 LAAEIADYLDILGSRARLFGIIKDEMIAVKEAHATP-----RRTIILD---SDAGVDDED 531 Query: 514 MIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565 +I++E + V +S+ G+I R+ + S + ++ D + A T +L Sbjct: 532 LIQREDMVVTVSHAGYIKRVPLSTYRAQRRGGKGRSGMQTRDQDFVARLFVASTHAPVLF 591 Query: 566 LSTDGKAYT-----LPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK------L 614 S+ G+ Y LP L + + G+A+ ++ L ++ I T K + Sbjct: 592 FSSRGQVYKEKVWRLP---LSAPQALGKALVNILPLEQDERITTIMPLPEDEKQWESLDV 648 Query: 615 LVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT-GDHVAVVGENRKLLIF 673 + +++G + S+ R GK +++ E++ V T D V + N + + F Sbjct: 649 MFATTRGTVRRNKLSDFAQVNRAGKIAMRLDEGEQIVDVQICTEQDDVLLTTANGQCIRF 708 Query: 674 SIDQI 678 ++ + Sbjct: 709 AVTDV 713 >gi|217420486|ref|ZP_03451991.1| DNA gyrase, A subunit [Burkholderia pseudomallei 576] gi|237813301|ref|YP_002897752.1| DNA gyrase, A subunit [Burkholderia pseudomallei MSHR346] gi|254195657|ref|ZP_04902084.1| DNA gyrase, A subunit [Burkholderia pseudomallei S13] gi|169652403|gb|EDS85096.1| DNA gyrase, A subunit [Burkholderia pseudomallei S13] gi|217395898|gb|EEC35915.1| DNA gyrase, A subunit [Burkholderia pseudomallei 576] gi|237503052|gb|ACQ95370.1| DNA gyrase, A subunit [Burkholderia pseudomallei MSHR346] Length = 888 Score = 385 bits (988), Expect = e-104, Method: Compositional matrix adjust. Identities = 226/610 (37%), Positives = 346/610 (56%), Gaps = 67/610 (10%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 SL + + YL YA+S I RA+PD+RDG KPVHRR++ AM E+ D+ +KKSARIV Sbjct: 33 TSLEEEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRPYKKSARIV 92 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGD +VYD++VR+AQ F RY L+ GQGNFG++DGD+AAA RYTE RM ++ Sbjct: 93 GDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAKI 152 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 +L +D++ VDF Y+ + +P++ PS+ PNLL NG+SGIAVGMAT+IP HN+ E+ Sbjct: 153 GHELLADIDKETVDFGPNYDGSEMQPLILPSRIPNLLINGSSGIAVGMATNIPPHNLNEV 212 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 +A L L++NP+ S+++L+E I PDFPT GII + + YR GRG +RA E Sbjct: 213 VDACLYLLNNPQASVDELIEIIPAPDFPTAGIIY-GVAGVRDGYRTGRGRVVMRAATHFE 271 Query: 260 EVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318 E+ RG I+V E+PYQV K L+E+IAEL+ K++ + DIRDES + V+ R Sbjct: 272 EIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKR 331 Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378 P++++ +++ + ++ F +NM L + P+++ L IL+ +L+HRREVL RR+ + Sbjct: 332 GEVPEVVLNNLYKATQLQDTFGMNMVAL-VDNQPKLLNLREILQCFLSHRREVLTRRTVY 390 Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV-----------------MVSR- 420 ++ R +L+GL +A NIDE IAII+ P P+ M++R Sbjct: 391 ELRKARERGHVLEGLAVALANIDEFIAIIKAAPTP-PIAKQELMAKSWDSSLVRDMLTRA 449 Query: 421 -----------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451 + L++ Q IL +RL+ L LE+ +I E Sbjct: 450 ETENAAAGGRDAYRPEGLSPAFGMQGDGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEY 509 Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511 +++A+ + +L ++ I E+ +VK F G R + E++ + T Sbjct: 510 RDVMAQIADLLDILARPERITTLIGDELTQVKAEF------GDARRSKIELNATELNT-- 561 Query: 512 QAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRI 563 + +I + + V +S+ G++ R+ K A KE D ++ A+T D I Sbjct: 562 EDLITPQDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYI 621 Query: 564 LLLSTDGKAY 573 L S G+ Y Sbjct: 622 LCFSNRGRVY 631 >gi|291520354|emb|CBK75575.1| DNA gyrase subunit A [Butyrivibrio fibrisolvens 16/4] Length = 844 Score = 385 bits (988), Expect = e-104, Method: Compositional matrix adjust. Identities = 218/595 (36%), Positives = 340/595 (57%), Gaps = 46/595 (7%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 +N+ V L+ +E Y+ YA+S I RA+PD+RDG KPV RR++ +M E+ +K Sbjct: 7 DNIHDVDLKETMETSYIDYAMSVIASRALPDVRDGLKPVQRRVLFSMIELNNGPDKPHRK 66 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 ARIVG+ +GK HPHGD S+Y +LV +AQ + RYPL+ G GNFG+ DGD AAA RYTEA Sbjct: 67 CARIVGDTMGKYHPHGDSSIYGALVNMAQEWNTRYPLVDGHGNFGSEDGDGAAAMRYTEA 126 Query: 135 RMTQVAELIL------------QGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182 R+++++ + + +D D VDF ++E + EP V P+++PNLL NGT+G Sbjct: 127 RLSKISMTMFGINYKDEKFTTGKDIDMDGVDFMPNFDETEKEPTVLPARYPNLLVNGTTG 186 Query: 183 IAVGMATSIPSHNVQEICEAALALIDNP-----EISIEKLLEYIIGPDFPTGGIIVESRE 237 IAVGMAT+IP HN++EI A +IDN E I++LLE + GPDFPTGG+I+ + Sbjct: 187 IAVGMATNIPPHNLREIIGAVNRIIDNQVEEDRETEIDELLEIVKGPDFPTGGVIL-GKA 245 Query: 238 SIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL 297 I E+YR GR RVRA +E + G IVVTE+PY V K+RLIE IA+L+ K+I Sbjct: 246 GIEEAYRTGRAKIRVRAVSEIEPMDNGKNRIVVTELPYMVNKARLIENIAKLVKDKKIDG 305 Query: 298 LEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPL 357 + D+RDES+ + V R ++P++++ ++ + ++ F + M L + P+++ L Sbjct: 306 ITDLRDESSREGIRVCIELRRDVNPNIILNQLYKHTQLQDTFGVIMLAL-VNNQPKILNL 364 Query: 358 DGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPK 414 +L +L H+++V+ RR+ + + + R IL+GLLIA NIDE+I IIR+ + K Sbjct: 365 KQMLVHYLDHQKDVVTRRTKYELNKAEERAHILEGLLIALDNIDEVIQIIRSSADVNSAK 424 Query: 415 PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQ 474 ++ RF L++ Q AI+++RLR+L LE +I+ E D+L K+ ++L K Sbjct: 425 ATLMERFGLSDAQAQAIVDMRLRALTGLERDKIQKEYDDLQILIGKLKAILGDEKILLGV 484 Query: 475 IACEIREVKEIFSKSTDLGRRRTTF----CEVSRADKATLQQAMIEKEPITVVISNRGWI 530 I EI E+ + + RRT+ ++S D MI V + G+I Sbjct: 485 IKTEITEIADKYGDD-----RRTSIGFDEFDISMED-------MIPVTNTVVTFTKLGYI 532 Query: 531 RSLKSHSVD--------LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPA 577 + + + + + + D + L + D +L + G+ Y + A Sbjct: 533 KRMNEDNFKAQHRGGKGIKGMETIDDDYVTEMLMMSSHDYLLFFTNKGRVYRIKA 587 >gi|119897357|ref|YP_932570.1| DNA gyrase subunit A [Azoarcus sp. BH72] gi|119669770|emb|CAL93683.1| DNA topoisomerase (ATP-hydrolysing) [Azoarcus sp. BH72] Length = 877 Score = 385 bits (988), Expect = e-104, Method: Compositional matrix adjust. Identities = 258/758 (34%), Positives = 404/758 (53%), Gaps = 92/758 (12%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 +SL + YL YA+S I RA+PD RDG KPVHRR+++AM E+ D+ A+KKSARIV Sbjct: 11 ISLEEEMRHSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMHELSNDWNRAYKKSARIV 70 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGD +VYD++VR+AQ F RY L+ GQGNFG++DGD+AAA RYTE RM ++ Sbjct: 71 GDVIGKYHPHGDSAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMARI 130 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 +L +D++ VDF Y+ + EP++ P++ PNLL NG+SGIAVGMAT+IP HN+ E+ Sbjct: 131 GHELLADIDKETVDFGPNYDGSEKEPLILPARIPNLLINGSSGIAVGMATNIPPHNLGEV 190 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 +A L L+++PE +E L+E + PDFPT G+I + E YR GRG +RAR +E Sbjct: 191 VDACLKLLEDPETDLEALIEIVKAPDFPTAGLIY-GLHGVHEGYRTGRGRVVMRARTHIE 249 Query: 260 EVGRGS--WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317 +G+ S I+V E+PYQV K L+E+IAEL+ K++ + +IRDES + V+ Sbjct: 250 PIGKNSDREAIIVDELPYQVNKRTLLERIAELVNEKKVEGISEIRDESDKSGMRVVIELK 309 Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377 R+ P++++ +++ + ++ F +NM L G+ P+++ L +L +L HRREV+ RR+ Sbjct: 310 RNEMPEVVLNNLYKHTQLQDTFGMNMVALVDGK-PRLLNLKQMLVCFLEHRREVVTRRTI 368 Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV----------------MVSR- 420 F ++ R IL+GL +A N+DEIIA+I+ P M+SR Sbjct: 369 FELKKARDRGHILEGLAVALSNVDEIIALIKAAPTPADAKRGLMERTWRSPLVEEMLSRA 428 Query: 421 --------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSE---------- 450 + L++ Q AIL LRL+ L LE+ +I E Sbjct: 429 LADSYRPEGLDPEFGFSAQGYKLSDAQAQAILELRLQRLTGLEQDKIVGEYREVMDLITD 488 Query: 451 LDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATL 510 L ++LA E+I +++ V+E+ + G R + +S A+ Sbjct: 489 LLDILARPERITAII----------------VEELTAIRNQFGDPRRSEIVLSTAEINI- 531 Query: 511 QQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDR 562 + +I E + V +S+ G+ R+ + A K+ D + A+T D Sbjct: 532 -EDLITPEDMVVTLSHTGYFKRQPLADYRAQRRGGRGKQATSMKDEDFIDHLFVANTHDT 590 Query: 563 ILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQDIVTAF---VYDSTCKLLVV 617 +L S+ G+AY L + G G+ I L L + I +D + + Sbjct: 591 VLCFSSRGRAYWLKVYEVPEGTRNSRGKPIVNLFPLIEGEKITAVLPVQTFDEEHFVFMA 650 Query: 618 SSKGNAFIVEESEI--IANTRK-GKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIF 673 +S+G V+++ + AN RK G + + + + V G+ V + + K + F Sbjct: 651 TSEGT---VKKTALTAFANPRKAGIIAVNLDDGDHLIGVAITDGECDVMLFSDAGKAVRF 707 Query: 674 SIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLT 710 + + M R +GVR + +DG VI + +G T Sbjct: 708 AESDVRPMGREARGVRGMTLEDG--QRVIAMLVAKGET 743 >gi|6006287|dbj|BAA84772.1| DNA gyrase A subunit [Bacteroides fragilis] Length = 845 Score = 385 bits (988), Expect = e-104, Method: Compositional matrix adjust. Identities = 250/772 (32%), Positives = 423/772 (54%), Gaps = 47/772 (6%) Query: 12 LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71 L ++ + +++ ++ Y+ Y++S I RA+PD+RDGFKPVHRRI++ M E+G Sbjct: 2 LEQDRIIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILYGMMELGNTSDKP 61 Query: 72 FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131 +KKSARIVGEV+GK HPHGD SVY ++VR+AQ + RYPL+ GQGNFG++DGDS AA RY Sbjct: 62 YKKSARIVGEVLGKYHPHGDSSVYFAMVRMAQEWAMRYPLVDGQGNFGSVDGDSPAAMRY 121 Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191 TEAR+ ++ E ++Q + ++ VDF ++ EP V P++ PNLL NG SGIAVGMAT++ Sbjct: 122 TEARLNKLGEEMMQDLYKETVDFEPNFDNTLMEPKVMPTRIPNLLVNGASGIAVGMATNM 181 Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251 P HN+ E+ +A A +DN ++++E+L+EY+ PDFPTGG I + E+Y GRG Sbjct: 182 PPHNLSEVIDACEAYLDNKDVTVEELMEYVKAPDFPTGGYIY-GISGVREAYLTGRGRVV 240 Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVR 310 +RA+ +E G+ IVVTEIPY V K+ LI+ IA+L+ KRI + + DES E +R Sbjct: 241 MRAKAEIES-GQTHDKIVVTEIPYNVNKAELIKAIADLVNEKRIEGISNANDESDREGMR 299 Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370 IV+ K R + +++ ++ ++ ++T F +N L GR P+++ L ++ ++ HR + Sbjct: 300 IVIDIK-RDANASVVLNKLYKMTALQTSFGVNNVALVNGR-PKMLNLRDLIVYFVEHRHD 357 Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQ 427 V+ RR+ F ++ R IL+GL+IA NIDE+I IIR P ++ RF+L+E Q Sbjct: 358 VVIRRTQFDLRKAKERAHILEGLIIASDNIDEVIRIIRAAKTPNDAISGLMERFNLSEIQ 417 Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487 AI+ +RLR L L + Q+ +E + ++ + ++S+L + I E+ EV+ + Sbjct: 418 ARAIVEMRLRQLTGLMQDQLHAEYEEVMKQIAYLESILADDEVCRKVIKDELLEVRAKYG 477 Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVD 539 RR+ E+ + + + + + + IS+ G+I R+ V Sbjct: 478 DE-----RRS---EIVYSSEEFNPEDFYADDQMIITISHMGYIKRTPLTEFRAQNRGGVG 529 Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLN 597 ++ D ++ A + ++ + GK Y L + G G AIQ ++++ Sbjct: 530 SKGTETRDEDFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTKNSKGRAIQNFLNID 589 Query: 598 HNQDIVTAFV---------YDSTCKLLVVSSKGNAFIVEESEIIANTR---KGKTFLKVS 645 + D V A++ Y ++ +L + G +++++ + +R G + + Sbjct: 590 SD-DAVNAYLRVKSLNDQEYINSHYVLFCTKNG---VIKKTSLEQYSRPRQNGVNAITIR 645 Query: 646 SEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDV--- 700 ++++ V G++ + + N + + F + M R GVR + D G +V Sbjct: 646 EDDRVIEVRMTNGNNEIIIANRNGRAIRFHEAAVRVMGRTATGVRGITLDDDGQDEVIGM 705 Query: 701 ICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752 IC K E + + + + Y + + RGG G ++GK ++ Sbjct: 706 ICIKDLETESVMVVSEQGYGKRSDIEDYRKTNRGGKGVKTMNITEKTGKLVT 757 >gi|213581963|ref|ZP_03363789.1| DNA gyrase subunit A [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 465 Score = 385 bits (988), Expect = e-104, Method: Compositional matrix adjust. Identities = 210/460 (45%), Positives = 293/460 (63%), Gaps = 42/460 (9%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + V++ L+ YL YA+S I RA+PD+RDG KPVHRR+++AM+ +G D+ A+KKSA Sbjct: 8 ITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSA 67 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG+IDGDSAAA RYTE R+ Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRL 127 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 ++A ++ ++++ VDF D Y+ + P V P+K PNLL NG+SGIAVGMAT+IP HN+ Sbjct: 128 AKIAHGLMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNL 187 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ LA IDN +ISIE L+E+I GPDFPT II R I E+YR GRG +RAR Sbjct: 188 TEVINGCLAYIDNEDISIEGLMEHIPGPDFPTAAII-NGRRGIEEAYRTGRGKVYIRARA 246 Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314 VE + G I+V EIPYQV K+RLIEKIAEL+ KR+ + +RDES +D +RIV+ Sbjct: 247 EVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKDGMRIVIE 306 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K ++ ++++ +++ + ++ F +NM L G+ P++M L I+ ++ HRREV+ R Sbjct: 307 VKRDAVG-EVVLNNLYSQTQLQVSFGINMVALHHGQ-PKIMNLKDIISAFVRHRREVVTR 364 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----------- 420 R+ F ++ R IL+ L IA NID II +IR P K ++SR Sbjct: 365 RTIFELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAALISRPWDLGNVAAML 424 Query: 421 -----------------------FSLTENQVDAILNLRLR 437 + LTE Q AIL+LRL+ Sbjct: 425 ERAGDDAARPEWLEPEFGVRDGQYYLTEQQAQAILDLRLQ 464 >gi|53724794|ref|YP_102248.1| DNA gyrase subunit A [Burkholderia mallei ATCC 23344] gi|124385239|ref|YP_001026943.1| DNA gyrase subunit A [Burkholderia mallei NCTC 10229] gi|126450865|ref|YP_001079770.1| DNA gyrase subunit A [Burkholderia mallei NCTC 10247] gi|254176796|ref|ZP_04883453.1| DNA gyrase, A subunit [Burkholderia mallei ATCC 10399] gi|254360034|ref|ZP_04976304.1| DNA gyrase, A subunit [Burkholderia mallei 2002721280] gi|52428217|gb|AAU48810.1| DNA gyrase, A subunit [Burkholderia mallei ATCC 23344] gi|124293259|gb|ABN02528.1| DNA gyrase, A subunit [Burkholderia mallei NCTC 10229] gi|126243735|gb|ABO06828.1| DNA gyrase, A subunit [Burkholderia mallei NCTC 10247] gi|148029274|gb|EDK87179.1| DNA gyrase, A subunit [Burkholderia mallei 2002721280] gi|160697837|gb|EDP87807.1| DNA gyrase, A subunit [Burkholderia mallei ATCC 10399] Length = 866 Score = 385 bits (988), Expect = e-104, Method: Compositional matrix adjust. Identities = 229/621 (36%), Positives = 350/621 (56%), Gaps = 72/621 (11%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 SL + + YL YA+S I RA+PD+RDG KPVHRR++ AM E+ D+ +KKSARIV Sbjct: 11 TSLEEEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRPYKKSARIV 70 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGD +VYD++VR+AQ F RY L+ GQGNFG++DGD+AAA RYTE RM ++ Sbjct: 71 GDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAKI 130 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 +L +D++ VDF Y+ + +P++ PS+ PNLL NG+SGIAVGMAT+IP HN+ E+ Sbjct: 131 GHELLADIDKETVDFGPNYDGSEMQPLILPSRIPNLLINGSSGIAVGMATNIPPHNLNEV 190 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 +A L L++NP+ S+++L+E I PDFPT GII + + YR GRG +RA E Sbjct: 191 VDACLYLLNNPQASVDELIEIIPAPDFPTAGIIY-GVAGVRDGYRTGRGRVVMRAATHFE 249 Query: 260 EVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318 E+ RG I+V E+PYQV K L+E+IAEL+ K++ + DIRDES + V+ R Sbjct: 250 EIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKR 309 Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378 P++++ +++ + ++ F +NM L + P+++ L IL+ +L+HRREVL RR+ + Sbjct: 310 GEVPEVVLNNLYKATQLQDTFGMNMVAL-VDNQPKLLNLREILQCFLSHRREVLTRRTVY 368 Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV-----------------MVSR- 420 ++ R +L+GL +A NIDE IAII+ P P+ M++R Sbjct: 369 ELRKARERGHVLEGLAVALANIDEFIAIIKAAPTP-PIAKQELMAKSWDSSLVRDMLTRA 427 Query: 421 -----------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451 + L++ Q IL +RL+ L LE+ +I E Sbjct: 428 ETENAAAGGRDAYRPEGLSPAFGMQGDGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEY 487 Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511 +++A+ + +L ++ I E+ +VK F G R + E++ + T Sbjct: 488 RDVMAQIADLLDILARPERITTLIGDELTQVKAEF------GDARRSKIELNATELNT-- 539 Query: 512 QAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRI 563 + +I + + V +S+ G++ R+ K A KE D ++ A+T D I Sbjct: 540 EDLITPQDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYI 599 Query: 564 LLLSTDG-----KAYTLPAGN 579 L S G K Y +P G+ Sbjct: 600 LCFSNRGRVYWVKVYEVPQGS 620 >gi|170698422|ref|ZP_02889495.1| DNA gyrase, A subunit [Burkholderia ambifaria IOP40-10] gi|170136675|gb|EDT04930.1| DNA gyrase, A subunit [Burkholderia ambifaria IOP40-10] Length = 851 Score = 385 bits (988), Expect = e-104, Method: Compositional matrix adjust. Identities = 232/610 (38%), Positives = 343/610 (56%), Gaps = 70/610 (11%) Query: 30 YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89 YL YA+S I RA+PD+RDG KPVHRR++ AM E+ D+ A+KKSARIVG+VIGK HPH Sbjct: 5 YLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRAYKKSARIVGDVIGKYHPH 64 Query: 90 GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDE 149 GD +VYD++VR+AQ F RY LI GQGNFG+IDGD+AAA RYTE RM ++ +L +D+ Sbjct: 65 GDTAVYDTIVRMAQDFSLRYMLIDGQGNFGSIDGDNAAAMRYTEIRMAKIGHELLADIDK 124 Query: 150 DAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDN 209 + VDF Y+ + +P V PS+ PNLL NG+SGIAVGMAT+IP HN+ E+ +A L++N Sbjct: 125 ETVDFEPNYDGNEMQPAVLPSRIPNLLINGSSGIAVGMATNIPPHNLNEVVDACQHLLNN 184 Query: 210 PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS-WCI 268 E +I++L+E I PDFPT GII + + YR GRG +RA EE+ RG I Sbjct: 185 SEATIDELIEIIPAPDFPTAGIIY-GVAGVRDGYRTGRGRVVMRATTHFEEIDRGQRMAI 243 Query: 269 VVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMES 328 +V E+PYQV K L+E+IAEL+ K++ + DIRDES + V+ R P++++ + Sbjct: 244 IVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKRGEVPEVVLNN 303 Query: 329 IFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVE 388 ++ + ++ F +NM L G+ P+++ L IL+ +L+HRREVL RR+ + ++ R Sbjct: 304 LYKATQLQDTFGMNMVALVDGQ-PKLLNLKEILQCFLSHRREVLTRRTIYELRKARERGH 362 Query: 389 ILKGLLIAYLNIDEIIAIIRNEDKP---------KP-------VMVSR------------ 420 +L+GL +A NIDE IAII+ P KP M++R Sbjct: 363 VLEGLAVALANIDEFIAIIKAAPTPPIAKQELMAKPWDSSLVREMLTRAETENASAGGRS 422 Query: 421 ------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKID 462 + L++ Q IL +RL+ L LE+ +I E ++A+ + Sbjct: 423 AYRPEGLNPAFGMQTDGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEYREVMAQIADLL 482 Query: 463 SLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITV 522 +L ++ I E+ VK F G R + E++ + T + +I + + V Sbjct: 483 DILARPERITTMIGDELTSVKAEF------GDARRSRIELNATELNT--EDLITPQDMVV 534 Query: 523 VISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG---- 570 +S+ G++ R+ K A KE D ++ A+T D IL S G Sbjct: 535 TMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYILCFSNRGRVYW 594 Query: 571 -KAYTLPAGN 579 K Y +P G+ Sbjct: 595 VKVYEVPQGS 604 >gi|239944807|ref|ZP_04696744.1| DNA topoisomerase IV subunit A [Streptomyces roseosporus NRRL 15998] gi|239991272|ref|ZP_04711936.1| DNA topoisomerase IV subunit A [Streptomyces roseosporus NRRL 11379] gi|291448273|ref|ZP_06587663.1| DNA topoisomerase IV subunit A [Streptomyces roseosporus NRRL 15998] gi|291351220|gb|EFE78124.1| DNA topoisomerase IV subunit A [Streptomyces roseosporus NRRL 15998] Length = 818 Score = 385 bits (988), Expect = e-104, Method: Compositional matrix adjust. Identities = 215/535 (40%), Positives = 328/535 (61%), Gaps = 16/535 (2%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 EE + + + ++ +L YA S I RA+PD RDG KPVHRRI+ M+EMGL + Sbjct: 15 EEKILDIDVVDEMQGSFLEYAYSVIYSRALPDARDGMKPVHRRIVSQMNEMGLRPDRGYV 74 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYT 132 K AR+VGEV+GKLHPHGD S+YD+LVR+AQPF R PL+ G GNFG++ + D AA RYT Sbjct: 75 KCARVVGEVMGKLHPHGDASIYDALVRMAQPFSMRLPLVDGHGNFGSLGNDDPPAAMRYT 134 Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192 E RM L+ + +DED VDF+ Y+ ++ EP V P+ +PNLL NG SGIAVGMAT++P Sbjct: 135 ECRMADATSLMTEAIDEDTVDFQSNYDGQEREPAVLPAAYPNLLVNGVSGIAVGMATNMP 194 Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252 HN+ E+ AA LI +P +E L+ ++ GPD PTGG IV I ++Y GRG F++ Sbjct: 195 PHNLGEVIAAARHLIKHPGADVETLMRFVPGPDLPTGGRIV-GLTGIKDAYTAGRGSFKI 253 Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD--ESAEDVR 310 RA VE V +VVTE+P+ V ++I KI +L+ AK++ + D++D + A +R Sbjct: 254 RATVSVENVTARRKGLVVTELPFTVGPEKVIAKIKDLVSAKKLQGIADVKDLTDRAHGLR 313 Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370 +V+ KN P+ ++E ++ L+ ME F +N L G+ P + L +L+ +L HR E Sbjct: 314 LVIEVKN-GFVPEAVLEQLYKLTPMEESFGINNVALVDGQ-PLTLGLKELLEVYLDHRFE 371 Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQ 427 V+ RRS FR R+ +++GL++A L+IDE+I IIR+ D + K +++ FSL+E Q Sbjct: 372 VVRRRSEFRRTKRRDRLHLVEGLIVALLDIDEVIRIIRDSDNSAQAKERLMAHFSLSEIQ 431 Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487 IL+ LR L + + +++SE D L E + + ++L S + ++ E+ V + F Sbjct: 432 TQYILDTPLRRLTRFDRIELESERDKLNGEIDALTAILESDAELRKLVSSELAAVAKKF- 490 Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI-RSLKSHSVDLS 541 TD RRT E + + A++ + +P V++S+ G + R+ + V++S Sbjct: 491 -GTD---RRTVLLESAGSQIASVPLE-VADDPCRVLLSSTGLLARTANAEPVEIS 540 >gi|75911523|gb|ABA29617.1| DNA gyrase subunit A [Streptococcus pneumoniae] Length = 441 Score = 384 bits (987), Expect = e-104, Method: Compositional matrix adjust. Identities = 194/441 (43%), Positives = 299/441 (67%), Gaps = 7/441 (1%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 ++N+ V+L ++ ++ YA+S I RA+PD+RDG KPVHRRI++ M+E+G+ K Sbjct: 3 DKNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHK 62 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSARI G+V+GK HPHGD S+Y+++VR+AQ + RY L+ G GNFG++DGDSAAA RYTE Sbjct: 63 KSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAKRYTE 122 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 ARM+++A +L+ ++++ VDF D Y+ + EP+V P++FPNLL NG +GIAVGMAT+IP Sbjct: 123 ARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIPP 182 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E +A ++DNPE++ + L+E + GPDFPTG +++ + I ++Y G+G +R Sbjct: 183 HNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVM-GKSGIHKAYETGKGSIVLR 241 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312 +R +E G IVVTE PY V K+++ E I L+ KRI + +RDES E VR V Sbjct: 242 SRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFV 301 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 + K R ++++ ++F ++ M+T F NM + G +P+++ L IL ++ H++EV+ Sbjct: 302 IEVK-RDASANVILNNLFKMTQMQTNFGFNMLAIQNG-IPKILSLRQILDAYIEHQKEVV 359 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVD 429 RR+ F + + R IL+GLLIA +IDE+I IIR + + + ++S+F L+E Q Sbjct: 360 VRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSKFKLSERQSQ 419 Query: 430 AILNLRLRSLRKLEEYQIKSE 450 AIL++RLR L LE +I+SE Sbjct: 420 AILDMRLRRLTGLERDKIQSE 440 >gi|307565408|ref|ZP_07627897.1| DNA gyrase, A subunit [Prevotella amnii CRIS 21A-A] gi|307345858|gb|EFN91206.1| DNA gyrase, A subunit [Prevotella amnii CRIS 21A-A] Length = 854 Score = 384 bits (987), Expect = e-104, Method: Compositional matrix adjust. Identities = 236/682 (34%), Positives = 378/682 (55%), Gaps = 47/682 (6%) Query: 6 ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65 + ++ T+ + + +++ ++ Y+ Y++S I RA+PD+RDGFKPVHRRI+ M +G Sbjct: 1 MEDNQTIDHDRIMRINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILFGMRGIG 60 Query: 66 LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125 +KK AR+VGEV+GK HPHGD SVY +LVR+ Q + RY L+ GQGNFG++DGDS Sbjct: 61 NFSNQPYKKCARVVGEVLGKYHPHGDSSVYGALVRMGQDWNMRYKLVDGQGNFGSVDGDS 120 Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185 AAA RYTE R+ ++ E ++ +D+D VD + +++ +EP V P+K PNLL NG +GIAV Sbjct: 121 AAAMRYTECRLAKMGERVMDDIDKDTVDMVNNFDDTLTEPSVMPTKIPNLLVNGGNGIAV 180 Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245 GMAT+IP+HN+ E+ + A IDNP IS E+L++YI PDFPTG I + + +Y Sbjct: 181 GMATNIPTHNLSEVIDGCCAYIDNPAISTEELMQYIPAPDFPTGAYIY-GLQGVKNAYET 239 Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305 GRG +RA+ +E G IVVTEIPY V K++LIE IA+L+ ++ + ++ DE+ Sbjct: 240 GRGRVVMRAKAEIES-GETHDKIVVTEIPYGVNKAQLIEYIADLVKEGKLEGISNVNDET 298 Query: 306 A-EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364 + +RIV+ K R + ++++ +F ++ +++ F +N L GR P+++ L +K + Sbjct: 299 GRQGMRIVVDVK-RDANANIILNKLFKMTALQSSFSVNCIALVNGR-PRLLNLQECIKYF 356 Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RF 421 + HR +V RR+ F ++ R IL+GLLIA NIDE++ IIR P + RF Sbjct: 357 VEHRHDVTIRRTRFDLKKAQERAHILEGLLIACDNIDEVVHIIRASKTPSEAQTNLEKRF 416 Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481 +L E Q AI+++RL L L Q+ E + L+ + + +L++ ++ + E+ + Sbjct: 417 NLDELQSKAIVDMRLAQLTGLRMDQLHEEYEELMQTIKNLQEILDNPERCKEVMKNELYD 476 Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR-----SLKSH 536 +KE + RRT E+ + + +P+ + IS+ G+I+ K Sbjct: 477 IKEKYGDE-----RRT---EIIPDEHEFNAEDFYPNDPVVITISHLGYIKRTPLTDFKEQ 528 Query: 537 S---VDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGE 588 + V +E D + A +L + +G K Y +P G+ S G Sbjct: 529 ARGGVGSKGARTREKDFTEYIYSATMHQTMLFFTKEGRCYWMKCYDIPEGDKSS---KGR 585 Query: 589 AIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG---KTFLKVS 645 AIQ ++ L D V AF L + N ++ ++ T+KG KT L+ Sbjct: 586 AIQNMLSLEPG-DAVNAF--------LRIRGLDNEEFLDTHYVVFVTKKGLVKKTLLRAY 636 Query: 646 SEEKMKLVVKVT---GDHVAVV 664 S + V+ + GD V V Sbjct: 637 SRPRNNGVIAININDGDEVVDV 658 >gi|225873680|ref|YP_002755139.1| DNA gyrase, A subunit [Acidobacterium capsulatum ATCC 51196] gi|225793961|gb|ACO34051.1| DNA gyrase, A subunit [Acidobacterium capsulatum ATCC 51196] Length = 861 Score = 384 bits (987), Expect = e-104, Method: Compositional matrix adjust. Identities = 217/635 (34%), Positives = 351/635 (55%), Gaps = 59/635 (9%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 N+ +++ + YL Y++S I RA+PD+RDGFKPVHRRI++AM EMGL + K Sbjct: 2 NLVPINIEEEMRRSYLDYSMSVIIGRALPDVRDGFKPVHRRILYAMHEMGLQHNKKYTKC 61 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 A++VG+ +G HPHGD ++YD+LVRLAQPF RYP+I GQGNFG++DGD AA RYTE R Sbjct: 62 AKVVGQAMGVYHPHGDSAIYDTLVRLAQPFSLRYPMIDGQGNFGSVDGDPPAAMRYTECR 121 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 M ++A +L +D + VDF Y+E EP V P+K PNL+ NG++GIAVGMAT+IP HN Sbjct: 122 MMRIAGEMLADIDMETVDFTPNYDESTLEPTVLPTKIPNLIVNGSNGIAVGMATNIPPHN 181 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 + E+ A + +++NP + ++L+++ GPDFPTGG I R I +YR GRG F +RA+ Sbjct: 182 LTEVINATIEMVNNPHAGLAEVLQHVQGPDFPTGGFIY-GRSGIANAYRTGRGRFLMRAK 240 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315 +E++ +G I+VTEIPYQV K++LIE++A+L+ K I + DIRDES D ++ Sbjct: 241 ASIEQLPQGRSAIIVTEIPYQVNKAKLIERVADLVNDKVIDEISDIRDESDRDGMRIVIE 300 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 R + +++ ++ + M+ F + + G+ P+ +PL ++ ++ HR +V+ RR Sbjct: 301 LKRGAEAQIVLNQLYKHTQMQESFSMIFLAVVNGQ-PRELPLPDAIRHFIDHRVDVVRRR 359 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK----------------------- 412 +++ ++ R IL G IA ++D +I IIR Sbjct: 360 TAYLLRKAREREHILLGYQIALDHLDHVIKIIRGSSSRADARENLFQFFSGRTITVRDEA 419 Query: 413 --------------PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458 P ++ + +L+ Q+DAIL L+L L +L ++ EL + Sbjct: 420 LAGVKLDPQKYAIDPATMIEATLTLSYRQIDAILELQLYRLTQLSIDELLKELAEVRERI 479 Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ-QAMIEK 517 + +S+L S K+ + I E+ +V++ + RRT + + A LQ + +I Sbjct: 480 AEYESILASEKKLRSVIVKELEDVRKAYGDE-----RRTQIVD----ETAELQLEDLIAD 530 Query: 518 EPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569 E + V +S+ G++ R K + +E D ++ L T +L + Sbjct: 531 EQVAVTVSHSGYLKRTPISTYRQQKRGGTGRMGMKTREEDFVQQLLVDSTHAYLLCFTNT 590 Query: 570 GKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDI 602 G+ Y L + + G G++I L++L + + Sbjct: 591 GRVYWLKIYEIPDVGAAGKGKSIASLLNLQPGEQV 625 >gi|266620983|ref|ZP_06113918.1| DNA gyrase, A subunit [Clostridium hathewayi DSM 13479] gi|288867364|gb|EFC99662.1| DNA gyrase, A subunit [Clostridium hathewayi DSM 13479] Length = 840 Score = 384 bits (987), Expect = e-104, Method: Compositional matrix adjust. Identities = 254/761 (33%), Positives = 412/761 (54%), Gaps = 86/761 (11%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 + V V L+ +E+ Y+ YA+S I RA+PD+RDG KPV RR++ +M E+ +K Sbjct: 7 DKVHEVDLKKTMEKSYIDYAMSVIAARALPDVRDGLKPVQRRVLFSMIELNNGPDKPHRK 66 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 ARIVG+ +GK HPHGD S+Y +LV +AQ + RYPL+ G GNFG++DGD AAA RYTEA Sbjct: 67 CARIVGDTMGKYHPHGDSSIYGALVNMAQEWSTRYPLVDGHGNFGSVDGDGAAAMRYTEA 126 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 R+++V+ +L + ++ VDF ++E + EPVV P++FPNLL NGTSGIAVGMAT+IP H Sbjct: 127 RLSKVSMEMLADIGKNTVDFTPNFDETEKEPVVLPARFPNLLVNGTSGIAVGMATNIPPH 186 Query: 195 NVQEICEAALALIDN-----PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249 N++E+ A + +IDN E +E++LE I GPDFPTG I+ + I E+YR GRG Sbjct: 187 NLREVIGAVVKIIDNHVEENRETEMEEVLEIIKGPDFPTGATIL-GKMGIEEAYRTGRGK 245 Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309 RVRA +E + G I+VTE+PY V K+RLIEK+AEL K+I + D+RDES Sbjct: 246 IRVRAVTDIETLPNGKSRIIVTELPYMVNKARLIEKMAELAKEKKIDGITDLRDESDRSG 305 Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369 ++ R ++ ++++ + + ++ F + M L + P+V+ L +LK +L H++ Sbjct: 306 MRIVIELRRDVNANVILNQLLKHTQLQDTFGVIMLAL-VNNEPRVLNLMQMLKLYLEHQK 364 Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTEN 426 EV+ RR+ + + + R IL+GLLIA NIDE+I IIRN K ++ RF L++ Sbjct: 365 EVVTRRTQYDLNKAEERAHILQGLLIALDNIDEVIKIIRNSQNVQIAKAELMERFGLSDA 424 Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486 Q AI+++RLR+L LE ++++E L A+ E++ ++L K+ I EI + + + Sbjct: 425 QAQAIVDMRLRALTGLEREKLENEFKELEAKIEELRAILADEKKLLGVIREEIMLISDKY 484 Query: 487 SKS---------------------------TDLG--RRRT--TFCEVSRADKA-----TL 510 T LG +R + F +R K T+ Sbjct: 485 GDDRRTSIGFDEFDMSMEDLIPDENTIVAMTKLGYIKRMSVDNFKSQNRGGKGIKGMQTI 544 Query: 511 QQAMIEKEPIT------VVISNRGWIRSLKSHSVD-----------LSALHFKEGDSLK- 552 Q IE +T + +N G + LK++++ ++ L G+S+ Sbjct: 545 DQDYIEDLIMTTNHHYIMFFTNTGRVYRLKTYAIPEGSRTARGTAIINLLQLLPGESITA 604 Query: 553 -IALHAHTTDRILLLST-DGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDS 610 I + + D+ L ++T +G P + R +G +Q ++ L + +++ D+ Sbjct: 605 IIPMKEYDDDKFLFMATKNGMVKKTPMMEYANVRKNG--LQAIV-LREDDELIEVKATDN 661 Query: 611 TCKLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVS-SEEKMKLVVKVTGDHVAVVGEN 667 + + +++ G E+++ R G +K++ +E + + + G+ + +V EN Sbjct: 662 SKDIFLITKMGQCIRFNETDVRVTGRVSMGVIGMKLNDDDEVVGMQMDTQGEKLLIVSEN 721 Query: 668 RKLLIFSIDQI-PEMSRGKGVRLQSYKDGGISDVICFKICE 707 ID+ P+ GKG V+C+KI E Sbjct: 722 GMGKRTPIDEFTPQKRGGKG-------------VLCYKITE 749 >gi|186475503|ref|YP_001856973.1| DNA gyrase subunit A [Burkholderia phymatum STM815] gi|184191962|gb|ACC69927.1| DNA gyrase, A subunit [Burkholderia phymatum STM815] Length = 859 Score = 384 bits (987), Expect = e-104, Method: Compositional matrix adjust. Identities = 224/602 (37%), Positives = 342/602 (56%), Gaps = 67/602 (11%) Query: 30 YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89 Y+ YA+S I RA+PD+RDG KPVHRR+++AM E+ D+ A+KKSARIVG+VIGK HPH Sbjct: 5 YIEYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNRAYKKSARIVGDVIGKYHPH 64 Query: 90 GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDE 149 GD +VYD++VR+AQ F RY L+ GQGNFG++DGD+AAA RYTE RM ++ +L +D+ Sbjct: 65 GDSAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAKIGHELLADIDK 124 Query: 150 DAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDN 209 + VDF+ Y+ ++EP + P++ PNLL NG+SGIAVGMAT+IP HN+ EI +A L+ N Sbjct: 125 ETVDFQPNYDGSENEPSILPARIPNLLINGSSGIAVGMATNIPPHNLSEIVDACHHLLKN 184 Query: 210 PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS-WCI 268 PE SI++L+E + PDFPT GII + + YR GRG +RA EE+ RG I Sbjct: 185 PEASIDELIEIVPAPDFPTAGIIY-GVAGVRDGYRTGRGRVVMRAATHFEEIDRGQRMAI 243 Query: 269 VVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMES 328 +V E+PYQV K L+E+IAEL+ K++ + DIRDES + V+ R P++++ + Sbjct: 244 IVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKRGEVPEVILNN 303 Query: 329 IFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVE 388 ++ + ++ F +NM L G+ P+++ L +L +L+HRREVL RR+ + ++ R Sbjct: 304 LYKATQLQDTFGMNMVALVDGQ-PKLLNLKEMLSHFLSHRREVLTRRTVYELRKARERGH 362 Query: 389 ILKGLLIAYLNIDEIIAIIRNEDKPKPV-----------------MVSR----------- 420 +L+GL +A NID+ IAII+ P P+ M+ R Sbjct: 363 VLEGLAVALANIDDFIAIIKAAPTP-PIAKQELMDRSWDSSIVREMLQRAETDNATSGGR 421 Query: 421 -------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKI 461 + L++ Q IL +RL+ L LE+ +I E +++A+ + Sbjct: 422 AAYRPEGLNPAYGMQADGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEYRDVMAQIADL 481 Query: 462 DSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPIT 521 +L ++ + I E+ +K F G R + E++ + T + +I + + Sbjct: 482 LDILARPERITSIIFDELTTIKSEF------GDERRSKIEMNATELNT--EDLITPQDMV 533 Query: 522 VVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573 V +S+ G++ R+ K A KE D + A+T D IL S G+ Y Sbjct: 534 VTMSHSGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIDTLFIANTHDHILCFSNRGRVY 593 Query: 574 TL 575 L Sbjct: 594 WL 595 >gi|17545620|ref|NP_519022.1| DNA gyrase subunit A [Ralstonia solanacearum GMI1000] gi|17427913|emb|CAD14603.1| probable dna gyrase (subunit a)(type II topoisomerase) protein [Ralstonia solanacearum GMI1000] Length = 885 Score = 384 bits (987), Expect = e-104, Method: Compositional matrix adjust. Identities = 255/738 (34%), Positives = 396/738 (53%), Gaps = 74/738 (10%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 VSL + YLAYA+S I RA+PD+RDG KPVHRR+++AM E+ D+ +KKSARIV Sbjct: 11 VSLEEEMRSSYLAYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNRPYKKSARIV 70 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGD +VYD++VR+AQ F RY L+ GQGNFG++DGD+AAA RYTE R++++ Sbjct: 71 GDVIGKYHPHGDSAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRLSKI 130 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A +L +D++ VDF Y+ ++EP + P++ PNLL NG+SGIAVGMAT+IP HN++E+ Sbjct: 131 AHELLADIDKETVDFEPNYDGSETEPSILPARIPNLLINGSSGIAVGMATNIPPHNLREV 190 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 + L L+ NP+ ++++L+E I PDFPT GII + E YR GRG +RA+ E Sbjct: 191 VDGCLHLLRNPDATVDELIELIPAPDFPTAGIIY-GISGVREGYRTGRGRVVMRAKTHFE 249 Query: 260 EVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318 ++ RG I+V E+PYQV K L+E+IAEL+ KRI + DIRDES + V+ R Sbjct: 250 DIDRGQRQAIIVDELPYQVNKRTLLERIAELVTEKRIEGISDIRDESDKSGMRVVIELKR 309 Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378 P++++ +++ + ++ F +NM L G+ P+++ L +L+ +L HRREV+ RR+ F Sbjct: 310 GEVPEVVLNNLYKNTQLQDTFGMNMVALVDGQ-PRLLNLRQMLECFLLHRREVVTRRTVF 368 Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV-----------------MVSR- 420 ++ R IL+GL +A NIDE IAII+ P P+ M+SR Sbjct: 369 DLRKARERGHILEGLAVALANIDEFIAIIKAAPTP-PIAKQELMGRNWDSGLVREMLSRA 427 Query: 421 ---------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453 + L++ Q IL +RL+ L LE+ +I E Sbjct: 428 ESDTVGGRAAYRPEGLLPVFGMQEGGLYKLSDTQAQEILQMRLQRLTGLEQDKIVQEYRE 487 Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513 ++A+ + +L + +I I V+E+ + G R + E + + T + Sbjct: 488 VMAQIADLLDIL----ARPERITAII--VEELTLIRAEFGDERRSQIEHNATELDT--ED 539 Query: 514 MIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565 +I + + V +S+ G++ R+ K A KE D + A+T D IL Sbjct: 540 LITPQDLVVTLSHSGYMKSQPISEYRAQKRGGRGKQAAATKEDDWIDTLFVANTHDYILC 599 Query: 566 LSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQD---IVTAFVYDSTCKLLVVSSK 620 S G+ Y L + G G I + L+ + I+ +D + + +SK Sbjct: 600 FSNRGRLYWLKVWEVPQGSRNSRGRPIVNMFPLSPGEKINVILPVKQFDEQHFVFMATSK 659 Query: 621 GNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT-GDH-VAVVGENRKLLIFSIDQI 678 G +E +N RK + + +T G H V + + K + F + + Sbjct: 660 GTVKKTALTE-FSNPRKAGIIAVDLDDGDFLIGADITDGQHDVMLFSDAGKAVRFDENDV 718 Query: 679 PEMSR-GKGVRLQSYKDG 695 M R +GVR + ++G Sbjct: 719 RPMGRQARGVRGMNLEEG 736 >gi|253999244|ref|YP_003051307.1| DNA gyrase subunit A [Methylovorus sp. SIP3-4] gi|313201333|ref|YP_004039991.1| DNA gyrase subunit A [Methylovorus sp. MP688] gi|253985923|gb|ACT50780.1| DNA gyrase, A subunit [Methylovorus sp. SIP3-4] gi|312440649|gb|ADQ84755.1| DNA gyrase, A subunit [Methylovorus sp. MP688] Length = 848 Score = 384 bits (987), Expect = e-104, Method: Compositional matrix adjust. Identities = 227/614 (36%), Positives = 352/614 (57%), Gaps = 61/614 (9%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 +SL + YL YA+S I RA+PD+RDG KPVHRR++ AM E+ D+ +KKSARIV Sbjct: 11 ISLEDEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELSNDWNRPYKKSARIV 70 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGD +VYD++VR+AQ F RY L+ GQGNFG++DGD+AAA RYTE RM ++ Sbjct: 71 GDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAKI 130 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A +L +D++ VDF Y+ + EP++ P++ PNLL NG+SGIAVGMAT+IP HN+ E+ Sbjct: 131 AHELLADIDKETVDFGPNYDGSEHEPLIMPARIPNLLINGSSGIAVGMATNIPPHNLNEV 190 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 +A L L+ NPE ++++L++ I PDFPT GII + + E YR GRG +R R VE Sbjct: 191 VDACLVLLKNPETTVDELIDIIPAPDFPTAGIIYGTL-GVKEGYRTGRGRVVMRGRTHVE 249 Query: 260 EVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318 ++ +G+ +++ E+PYQV K LIEKIAEL+ K+I + D+RDES + V+ R Sbjct: 250 DMEKGNRQALIIDELPYQVNKKTLIEKIAELVNDKKIEGISDLRDESDKSGMRVVIELKR 309 Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378 P++++ +++ + ++ F +NM L G+ P+++ L +L+ +L HRREV+ RR+ + Sbjct: 310 GEVPEVILNNLYKQTQLQDTFGMNMVALLDGQ-PRLLNLKQMLEAFLRHRREVITRRTVY 368 Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP-------------KPV---MVSR-- 420 ++ R +L+GL +A N+DE+IA+I+ P PV M+ R Sbjct: 369 ELRKARERGHVLEGLAVALANVDEMIALIKAAPTPPEAKKSLMARTWVSPVVEEMLKRAA 428 Query: 421 ------------FSLTEN-------QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKI 461 F +T N Q IL +RL+ L LE+ +I +E ++ + Sbjct: 429 MEASRPDGLSVDFGMTPNGYRLSDVQAQEILQMRLQRLTGLEQDKIVNEYKEVMDVIADL 488 Query: 462 DSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPIT 521 +L ++ I E+ +++ F RR+ V A +L+ +I + + Sbjct: 489 LDILAKPERVTQMIVDELAAIRQQFGDE-----RRSEI--VHNAQDLSLED-LITPQDVV 540 Query: 522 VVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG--- 570 V +S+ G++ R+ + A KE D + A+T D IL S+ G Sbjct: 541 VTLSHTGYVKSQPLDEYRAQRRGGRGKQATATKEDDFIDKMFVANTHDYILCFSSRGRVY 600 Query: 571 --KAYTLPAGNLLS 582 K Y +P G+ +S Sbjct: 601 WLKVYEVPQGSRIS 614 >gi|319762552|ref|YP_004126489.1| DNA gyrase, a subunit [Alicycliphilus denitrificans BC] gi|330824569|ref|YP_004387872.1| DNA gyrase subunit A [Alicycliphilus denitrificans K601] gi|317117113|gb|ADU99601.1| DNA gyrase, A subunit [Alicycliphilus denitrificans BC] gi|329309941|gb|AEB84356.1| DNA gyrase, A subunit [Alicycliphilus denitrificans K601] Length = 896 Score = 384 bits (987), Expect = e-104, Method: Compositional matrix adjust. Identities = 264/763 (34%), Positives = 406/763 (53%), Gaps = 93/763 (12%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 +SL + YL YA+S I RA+PD RDG KPVHRR+++AM E+ D+ +KKSARIV Sbjct: 28 ISLEEEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMHELNNDWNRPYKKSARIV 87 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGD +VYD++VR+AQ F R+ L+ GQGNFG++DGD+AAA RYTE R+ ++ Sbjct: 88 GDVIGKYHPHGDSAVYDTIVRMAQDFSLRHMLVDGQGNFGSVDGDNAAAMRYTEIRLAKI 147 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A +L +D++ VDF Y+ + EP+V PS+ PNLL NG++GIAVGMAT+IP HN+ E+ Sbjct: 148 AHEMLADIDKETVDFGPNYDGSEKEPLVLPSRLPNLLVNGSAGIAVGMATNIPPHNLNEV 207 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 +A L L+ NPE SI++L+E I PDFPT GII + + + YR GRG +RA+ E Sbjct: 208 VDACLHLLRNPESSIDELMEIIPAPDFPTAGIIY-GIQGVKDGYRTGRGKVVMRAKVHFE 266 Query: 260 EVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318 ++ RG I+V E+PYQV K L E++AEL+ K++ + I+DES + ++ R Sbjct: 267 DIDRGQRQAIIVDELPYQVNKKTLQERMAELVHEKKLEGISHIQDESDKSGMRLVIELKR 326 Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378 P++++ +++ + ++ F +NM L G+ P++ L +++ +L HRREV+ RR+ F Sbjct: 327 GEVPEVVLNNLYKQTQLQDTFGMNMVALVDGQ-PKLCNLKELIEVFLQHRREVVTRRTVF 385 Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIR------------------------------ 408 ++ R +L+GL +A NIDE I IIR Sbjct: 386 ELRKARERGHVLEGLAVALANIDEFIRIIRESPTPPVAKAELMARSWDSQLVREMLTRTR 445 Query: 409 ------NEDKPKPVMVSR---------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453 N D +P + R + L++ Q IL +RL+ L LE+ +I +E + Sbjct: 446 EDGGVVNADDYRPEGLEREFGMQESGLYRLSDTQAQEILQMRLQRLTGLEQDKIVAEYKD 505 Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513 ++A E + +L + I E+ +++ F + T LG RR+T E S D +T + Sbjct: 506 VMAVIENLLDILAKPARVSTIIGEELSALRQEFGQ-TRLGARRSTI-EHSAQDLST--ED 561 Query: 514 MIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565 +I + V +S+ G+I R+ K A KE D + A+T D IL Sbjct: 562 LITPTDMVVTLSHTGYIKSQPLSEYRAQKRGGRGKQATATKEDDWIDQLFIANTHDYILC 621 Query: 566 LSTDGKAYTL-----PAGNLLSGRG----------HGEAIQLLIDLNHNQDIVTA--FVY 608 S G+ Y L PAG+ S RG GE I +++ L A +V+ Sbjct: 622 FSNRGRLYWLKVWEVPAGSRNS-RGRPIVNMFPLQEGEKINVVLPLTGEMRSFPADRYVF 680 Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV--VKVTGDH-VAVVG 665 +T V + + F +N RK + V +E L+ G+H V + Sbjct: 681 MATSMGTVKKTALDEF--------SNPRKAG-IIAVGLDEGDYLIGAALTDGEHDVMLFS 731 Query: 666 ENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707 ++ K + F + + M R +GV+ +DG VI + E Sbjct: 732 DSGKAVRFDENDVRPMGRNARGVKGMQLEDG--QSVIAMLVAE 772 >gi|283768640|ref|ZP_06341552.1| DNA gyrase, A subunit [Bulleidia extructa W1219] gi|283105032|gb|EFC06404.1| DNA gyrase, A subunit [Bulleidia extructa W1219] Length = 828 Score = 384 bits (987), Expect = e-104, Method: Compositional matrix adjust. Identities = 241/743 (32%), Positives = 409/743 (55%), Gaps = 33/743 (4%) Query: 30 YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89 +L Y++S I RA+PD+RDG KPV RRI+ AM+EM ++K ARIVG+ +GK HPH Sbjct: 32 FLEYSMSVIVARALPDVRDGLKPVQRRILFAMNEMNNGPDKPYRKCARIVGDTMGKYHPH 91 Query: 90 GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDE 149 GD S+Y +LV +AQ + R L+ G GNFG++DGD AAA RYTEARM++++ IL+ +++ Sbjct: 92 GDSSIYGALVYMAQNWNMRETLVDGHGNFGSMDGDGAAAMRYTEARMSKISVEILRDLEK 151 Query: 150 DAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDN 209 D VD D Y+ E+ EP+V P++FPNLL NG+SGIAVGMAT++ HN++E +A +A ++N Sbjct: 152 DTVDMMDNYDGEEKEPMVLPARFPNLLVNGSSGIAVGMATNVAPHNLKETIDAVIAYMEN 211 Query: 210 PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIV 269 PEIS+ +L++++ GPDFPTGG I+ R I +++ GRG +RA+ EE+ G IV Sbjct: 212 PEISVTELMQFMKGPDFPTGGYIL-GRSGIRKAFETGRGSIVMRAKTHFEEMANGKMRIV 270 Query: 270 VTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFPKNRSLDPDLLMES 328 V EIPY V K+ L+E+I L K I + D+RDES + +R+V+ + + + ++++ Sbjct: 271 VDEIPYMVNKASLVERIGTLTREKLIDGITDLRDESNMKGIRVVVELR-KDVQAEVVLNQ 329 Query: 329 IFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVE 388 ++ ++ +++ F +N NV+ P++ + +LK ++ + EV+ RR++F ++ R Sbjct: 330 LYRMTALQSNFGVN-NVVLFDGAPRLAGMKELLKGYIDFQLEVIRRRTAFELKKAKDRAH 388 Query: 389 ILKGLLIAYLNIDEIIAIIRNEDKPKPVMV---SRFSLTENQVDAILNLRLRSLRKLEEY 445 IL+GL IA +DE+I IR + ++ ++F L E Q AIL+++ R L LE Sbjct: 389 ILEGLRIAVDGLDEVIHTIRQSKDAQEALINLMNKFPLDEIQAKAILDMQFRRLTGLERD 448 Query: 446 QIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRA 505 +I++E +LL + + +L ++ + + E+ E+K + RR+ E+ A Sbjct: 449 KIENEYQDLLLKIADYEDILAHKERVIDIVKNELTEIKAKYGSP-----RRS---EIIDA 500 Query: 506 DKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD--------LSALHFKEGDSLKIALHA 557 D + +I E I V +S G+++ L +++ + + + DS++ ++ Sbjct: 501 DAEMEDEDLIPVEDIMVTLSTNGYVKRLTTNTYSVQNRGGKGIKGMDLNKDDSIESVINM 560 Query: 558 HTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDI---VTAFVYDSTC 612 T D +LL + G+ + L N+ S G I L++++ ++ + V D Sbjct: 561 STHDFLLLFTNKGRVFRLRGFNIPNFSRTSKGIPIINLVNMDKDEKVKAMVPVKKNDEQT 620 Query: 613 K-LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKL 670 K L V+ KG SE + GK + ++ ++++ V G V + G N K Sbjct: 621 KFLFFVTKKGIVKRTAISEFENIMKNGKKAILLNEDDQLAFVKPTDGQAEVLIAGANGKA 680 Query: 671 LIFSIDQI-PEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGW 729 + D++ P+ GV+ + G S V EG + + + + Sbjct: 681 VRILEDKVRPQGRSAHGVK--GFNTDGSSVVGVATTLEGFNVLTVTEKGIGKVSSIASFR 738 Query: 730 LGKRGGVGSLVPKGFPRSGKFLS 752 L RG G K ++G +S Sbjct: 739 LTNRGSKGVKAAKINEKTGDLIS 761 >gi|94985121|ref|YP_604485.1| DNA gyrase, A subunit [Deinococcus geothermalis DSM 11300] gi|94555402|gb|ABF45316.1| DNA gyrase, A subunit [Deinococcus geothermalis DSM 11300] Length = 809 Score = 384 bits (987), Expect = e-104, Method: Compositional matrix adjust. Identities = 207/523 (39%), Positives = 329/523 (62%), Gaps = 18/523 (3%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + V + ++ ++ YA++ I +RA+PD+RDG KPV RRI++AM + GL KSA Sbjct: 4 IHPVDITSEVKTNFINYAMNVIVDRALPDVRDGLKPVQRRIMYAMLQEGLASNQKHAKSA 63 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 +VGEV+ K HPHGD S+YD++VRL Q + RY L+ QGNFG+IDGD AA RYTEARM Sbjct: 64 AVVGEVMKKYHPHGDASIYDAMVRLGQWWNMRYTLVDPQGNFGSIDGDPPAAMRYTEARM 123 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 T++AE +L ++++ V + Y+E EP V PS PNLL NG +GIAVGMAT+IP HN+ Sbjct: 124 TKIAEEVLADLEKETVLLKPNYDETTVEPAVLPSAVPNLLINGAAGIAVGMATNIPPHNL 183 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 EI LALID P+I++++++ +++GPDFPTGG I SR+ I E+Y G G +VR + Sbjct: 184 TEISNGLLALIDKPDITLDEMMTHVLGPDFPTGGRI--SRQGIREAYATGHAGLKVRGKA 241 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES--AEDVRIVLF 314 ++E G IV+TEIPYQV K+ LI+ I+ + A +IP + +RDES E VRIV+ Sbjct: 242 RIDE-KNGRAQIVITEIPYQVNKTNLIQTISAMYKAGKIPDISALRDESDRKEPVRIVVE 300 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K R P L++ ++ + +++ F + MN+ + P+V+PL ++ +L HRR+V+ R Sbjct: 301 LK-RGAIPTLVLNQLYKYTQLQSTFTV-MNLSIVNGEPRVLPLIDTMRAFLDHRRDVVTR 358 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAI 431 R+ + ++ + R IL+GL+ A +IDE+I IR + + + ++ RF+LTE Q AI Sbjct: 359 RTQYDLKKAEERAHILEGLIKALDHIDEVIERIRASNTAAEARDALMQRFTLTEIQAQAI 418 Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491 L++RL+ L LE ++ +E D L ++ S+L + W +I EIR++++ + Sbjct: 419 LDMRLQRLVGLEREKLVAEYDELQKVIARLRSILGDERLLWREIKKEIRDIRDRYGDE-- 476 Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK 534 RR+T ++ + ++ +I E + + ++ G+++ K Sbjct: 477 ---RRSTITDL---EDDISKEDLIAVEDMVITMTKAGYLKRTK 513 >gi|37514957|dbj|BAC98435.1| GyrA protein [Burkholderia glumae] Length = 869 Score = 384 bits (987), Expect = e-104, Method: Compositional matrix adjust. Identities = 260/760 (34%), Positives = 402/760 (52%), Gaps = 92/760 (12%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 +SL + YL YA+S I RA+PD+RDG KPVHRR++ AM E+ D+ A+KKSARIV Sbjct: 11 ISLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRAYKKSARIV 70 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGD++VYD++VR+AQ F RY L+ GQGNFG++DGD+AAA RYTE RM ++ Sbjct: 71 GDVIGKYHPHGDRAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAKI 130 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 +L +D++ VDF Y+ +SEP + P++ PNLL NG+SGIAVGMAT+IP HN+ E+ Sbjct: 131 GHELLADIDKETVDFGPNYDGSESEPTILPARIPNLLINGSSGIAVGMATNIPPHNLSEV 190 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 +A L+ NPE ++++L+E I PDFPT GII + + YR GRG +RA E Sbjct: 191 VDACHHLLANPEATVDELIEIIPAPDFPTAGIIY-GVAGVRDGYRTGRGRVVMRAATHFE 249 Query: 260 EVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318 E+ RG I+V E+PYQV K L+E+IAEL+ K++ + DIRDES + V+ R Sbjct: 250 EIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKR 309 Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378 P++++ +++ + ++ F +NM L G+ P+++ L +L +LAHRREVL RR+ + Sbjct: 310 GEVPEVVLNNLYKSTQLQDTFGMNMVALVDGQ-PKLLNLKEMLVCFLAHRREVLTRRTIY 368 Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV-----------------MVSR- 420 ++ R +L+GL +A NIDE I II+ P P+ M++R Sbjct: 369 ELRKARERGHVLEGLAVALANIDEFIEIIKAAPTP-PIARQALMAKSWDSSLVREMLTRA 427 Query: 421 -----------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451 ++L+E Q IL +RL+ L LE+ +I E Sbjct: 428 ETENAAAGGREAYRPEGLNAAFGMQADGQYNLSETQAQEILQMRLQRLTGLEQDKIIGEY 487 Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511 ++A+ + +L ++ I E+ VK F G R + E++ + T Sbjct: 488 REVMAQIADLLDILARPERITTIITEELTAVKAEF------GDARRSKIELNATELNT-- 539 Query: 512 QAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRI 563 + +I + + V +S+ G++ R+ K A KE D ++ A+T D I Sbjct: 540 EDLITPQDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYI 599 Query: 564 LLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI-----VTAFVYDSTCK 613 L S G K Y +P G S G I + L + I V F+ D Sbjct: 600 LCFSNRGRVYWVKVYEVPQG---SRNSRGRPIVNMFPLQEGEKINVVLPVREFLADKY-- 654 Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT---GDH-VAVVGENRK 669 + + +S G V+++ + A +R K + + ++ + G+H V + ++ K Sbjct: 655 VFMATSLGT---VKKTPLEAFSRPMKKGIIAVGLDDGDFLIGASITDGEHDVMLFSDSGK 711 Query: 670 LLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEG 708 + F + + M R +GVR +DG VI + G Sbjct: 712 AVRFDENDVRPMGREARGVRGMQLEDG--QQVIAMLVAGG 749 >gi|167586524|ref|ZP_02378912.1| DNA gyrase subunit A [Burkholderia ubonensis Bu] Length = 851 Score = 384 bits (987), Expect = e-104, Method: Compositional matrix adjust. Identities = 229/611 (37%), Positives = 346/611 (56%), Gaps = 72/611 (11%) Query: 30 YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89 YL YA+S I RA+PD+RDG KPVHRR++ AM E+ D+ A+KKSARIVG+VIGK HPH Sbjct: 5 YLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRAYKKSARIVGDVIGKYHPH 64 Query: 90 GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDE 149 GD +VY+++VR+AQ F RY L+ GQGNFG+IDGD+AAA RYTE RM ++ +L +D+ Sbjct: 65 GDSAVYETIVRMAQDFSLRYMLVDGQGNFGSIDGDNAAAMRYTEIRMAKIGHELLADIDK 124 Query: 150 DAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDN 209 + VDF Y+ + +P++ PS+ PNLL NG+SGIAVGMAT+IP HN+ E+ +A L+ N Sbjct: 125 ETVDFGPNYDGSEMQPLILPSRIPNLLINGSSGIAVGMATNIPPHNLNEVVDACQHLLHN 184 Query: 210 PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS-WCI 268 PE +I++L+E I PDFPT GII + + YR GRG +RA EE+ RG I Sbjct: 185 PEATIDELIEIIPAPDFPTAGIIY-GVAGVRDGYRTGRGRVVMRAATHFEEIDRGQRMAI 243 Query: 269 VVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMES 328 +V E+PYQV K L+E+IAEL+ K++ + DIRDES + V+ R P++++ + Sbjct: 244 IVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKRGEVPEVVLNN 303 Query: 329 IFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVE 388 ++ + ++ F +NM L G+ P+++ L IL+ +LAHRREVL RR+ + ++ R Sbjct: 304 LYKATQLQDTFGMNMVALVDGQ-PKLLNLKEILQCFLAHRREVLTRRTVYELRKARERGH 362 Query: 389 ILKGLLIAYLNIDEIIAIIRNEDKPKPV-----------------MVSR----------- 420 +L+GL +A NIDE IAII+ P P+ M++R Sbjct: 363 VLEGLAVALANIDEFIAIIKAAPTP-PIAKQELMAKAWDSSLVREMLTRAETENATAGGR 421 Query: 421 -------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKI 461 + L++ Q IL +RL+ L LE+ +I E +++A+ + Sbjct: 422 DAYRPEGLNPAFGMQGDGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEYRDVMAQIADL 481 Query: 462 DSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPIT 521 +L+ ++ I E+ VK F G R + E++ + T + +I + + Sbjct: 482 LDILSRPERITVMIGEELTAVKAEF------GDARRSKIELNATELNT--EDLITPQDMV 533 Query: 522 VVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG--- 570 V +S+ G++ R+ K A KE D ++ A+T D +L S G Sbjct: 534 VTMSHSGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYMLCFSNRGRVY 593 Query: 571 --KAYTLPAGN 579 K Y +P G+ Sbjct: 594 WVKVYEVPQGS 604 >gi|225016751|ref|ZP_03705943.1| hypothetical protein CLOSTMETH_00663 [Clostridium methylpentosum DSM 5476] gi|224950419|gb|EEG31628.1| hypothetical protein CLOSTMETH_00663 [Clostridium methylpentosum DSM 5476] Length = 868 Score = 384 bits (986), Expect = e-104, Method: Compositional matrix adjust. Identities = 219/576 (38%), Positives = 345/576 (59%), Gaps = 23/576 (3%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 V + +++ +L Y++S I RA+PD+RDG KPVHRRI++ + E G+ A++KSA V Sbjct: 17 VDIEREMKKSFLDYSMSVIVSRALPDVRDGLKPVHRRILYTLYENGIFPDKAYRKSADTV 76 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G V+G+ HPHGD SVYD+LVR+AQ F RYPL+ G GNFG++DGD AAYRYTEA+M+++ Sbjct: 77 GSVLGRYHPHGDASVYDALVRMAQDFSLRYPLVDGHGNFGSVDGDPPAAYRYTEAKMSKI 136 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 + +L ++++ V+F Y++ EP+V P++FPNLL NG++GIAVGMAT+IP HN++E+ Sbjct: 137 SMEMLTDINKETVEFGMNYDDRLKEPLVLPARFPNLLVNGSTGIAVGMATNIPPHNLREV 196 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 +A LIDNP+ + ++ I GPDFPT GII+ + I +Y GRG +VRAR +E Sbjct: 197 IDAISLLIDNPDAELYDIMSCIKGPDFPTAGIIM-GQSGIRAAYATGRGKIQVRARAEIE 255 Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLFPKNR 318 E+ G + IVVTE+PYQV K+RLIE IA + KRI + +RDES E +RIV+ K R Sbjct: 256 EMNNGRFRIVVTELPYQVNKARLIESIANHVKDKRIEGISALRDESNREGMRIVIELK-R 314 Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378 +P +++ ++ + M+ F + +N+ + VP+VM L +L+ ++ + EV+ +R+ + Sbjct: 315 DANPQIILNKLYSFTQMQETFGV-INLALVNGVPKVMTLKEMLEHYIEFQSEVIRKRTEY 373 Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAILNLR 435 ++ R IL+GL IA IDE+I IR + K ++ RF L E Q DAI+ +R Sbjct: 374 DLRKAREREHILEGLKIALDFIDEVIKTIRASKTIAESKENLIERFGLDELQADAIVKMR 433 Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495 L L LE +I+ EL LL + ++ +++L + E+ +++ F R Sbjct: 434 LGQLSGLERMKIEEELAGLLEKIKEYETILGDDALILVIVREELAAIRDKFGDE-----R 488 Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKE 547 RT VS + +I +E V +++ G+I ++ K ++ + +E Sbjct: 489 RTEILAVS---GEVDIEDLIPEEDCVVTLTHYGYIKRQPTDIYKTQKRGGRGVAGMKQRE 545 Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG 583 D + A T D +L ++ G+ Y L + G Sbjct: 546 EDFAEELFIASTHDNVLFITNRGRMYKLKCYEIPEG 581 >gi|327193329|gb|EGE60233.1| DNA gyrase protein, A subunit [Rhizobium etli CNPAF512] Length = 919 Score = 384 bits (986), Expect = e-104, Method: Compositional matrix adjust. Identities = 240/703 (34%), Positives = 376/703 (53%), Gaps = 63/703 (8%) Query: 26 LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85 ++ YL YA+S I RA+PD+RDG KPVHRRI++ MSE+G+D+ + K AR+ G+V+GK Sbjct: 4 MQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYGMSELGIDWNKKYVKCARVTGDVMGK 63 Query: 86 LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145 HPHG+ ++YD+L R+AQP+ R PLI GQGNFG++DGD AA RYTE R+ + A +L Sbjct: 64 YHPHGNAAIYDALARMAQPWSLRLPLIDGQGNFGSVDGDPPAAERYTECRLEKAAHSLLD 123 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 +D++ VDFRD Y+ SEPVV P+KFPNLL NG GIAVGMAT+IP HN+ E+ + +A Sbjct: 124 DLDKETVDFRDNYDGTLSEPVVVPAKFPNLLVNGAGGIAVGMATNIPPHNLSEVIDGCIA 183 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265 LI++P I + +L++ I GPDFPTG I+ R I +Y GRG +R +E + Sbjct: 184 LINDPAIELPELMQIIPGPDFPTGAKIL-GRAGIRSAYETGRGSVIMRGVAAIEPMRGDR 242 Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325 I++TEIPYQV K+ +IEK+AEL+ KRI + D+RDES V+ R + +++ Sbjct: 243 EQIIITEIPYQVNKATMIEKMAELVREKRIEGISDLRDESDRQGYRVVIELKRDANAEVI 302 Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385 + ++ + ++T F NM L+ G+ Q+ LD +L+ +++ R EV+ RR+ F ++ Sbjct: 303 LNQLYRYTPLQTSFGCNMVALNGGKPEQLTLLD-MLRAFVSFREEVVSRRTKFLLRKARE 361 Query: 386 RVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSR---------------------- 420 R +L GL IA NIDE+I +IR P+ ++SR Sbjct: 362 RAHVLVGLAIAVANIDEVIRVIRQAPDPQSAREELMSRRWPAEDVESLIRLIDDPRHRIN 421 Query: 421 ----FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476 ++L+E Q AIL LRL L L +I EL+ + E +L+S + + Sbjct: 422 EDMTYNLSEEQARAILELRLARLTALGRDEIGDELNKIGEEIRDYLDILSSRVRIQTIVK 481 Query: 477 CEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI------ 530 E+ V++ F RRT E+ + +I +E + V +S+ G+I Sbjct: 482 DELTAVRDEFGTP-----RRT---EIVDGGLEMDDEDLIAREDMVVTVSHLGYIKRVPLT 533 Query: 531 --RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSG 583 R+ + S + ++ D + +T +L S+ G K + LP G S Sbjct: 534 TYRAQRRGGKGRSGMTTRDEDFVSRLFVVNTHTPVLFFSSRGIVYKEKVWRLPIGTPTS- 592 Query: 584 RGHGEAIQLLIDLNHNQDIVTAFVYD------STCKLLVVSSKGNAFIVEESEIIANTRK 637 G+A+ ++ L + I T ++ +++G + S+ + R Sbjct: 593 --RGKALINMLPLEPGERITTILPLPEDEASWDNLDVMFSTTRGTVRRNKLSDFVQVNRN 650 Query: 638 GKTFLKVSSEEKMKLVVKVTGDH--VAVVGENRKLLIFSIDQI 678 GK +K+ E L V+ +H V + + + FS+D + Sbjct: 651 GKIAMKLEEEGDEILSVETCTEHDDVLLTTALGQCIRFSVDDV 693 >gi|160889572|ref|ZP_02070575.1| hypothetical protein BACUNI_01996 [Bacteroides uniformis ATCC 8492] gi|317480064|ref|ZP_07939175.1| DNA gyrase, subunit A [Bacteroides sp. 4_1_36] gi|156861089|gb|EDO54520.1| hypothetical protein BACUNI_01996 [Bacteroides uniformis ATCC 8492] gi|316903741|gb|EFV25584.1| DNA gyrase, subunit A [Bacteroides sp. 4_1_36] Length = 842 Score = 384 bits (986), Expect = e-104, Method: Compositional matrix adjust. Identities = 254/777 (32%), Positives = 417/777 (53%), Gaps = 57/777 (7%) Query: 12 LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71 L ++ + +++ ++ Y+ Y++S I RA+PD+RDGFKPVHRRI+ M +G Sbjct: 2 LEQDRIIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILFGMMGLGNTSDKP 61 Query: 72 FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131 +KKSAR+VGEV+GK HPHGD SVY +LVR+AQP+ RY L+ GQGN+G++DGDSAAA RY Sbjct: 62 YKKSARVVGEVLGKYHPHGDSSVYGALVRMAQPWAMRYMLVDGQGNYGSVDGDSAAAMRY 121 Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191 TE R+ ++ E ++ ++++ VD ++ +++ EP V P++ PNLL NG SGIAVGMAT++ Sbjct: 122 TECRLRKIGEDMMTDLEKETVDMQNNFDDSLQEPTVMPARIPNLLVNGASGIAVGMATNM 181 Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251 P+HN+ E+ +A +A I+N +I IE+L+ Y+ PDFPTGG I + E+Y GRG Sbjct: 182 PTHNLSEVIDACIAYIENNDIDIEELMTYVKAPDFPTGGYIY-GMSGVREAYLTGRGRVI 240 Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVR 310 +RAR + E G IVVTEIPY V K+ LI+ IA+L K+I + + DES E +R Sbjct: 241 MRARAEI-ETGSTHDKIVVTEIPYGVNKAELIKNIADLANEKKIEGIANANDESDREGMR 299 Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370 IV+ K R + +++ ++ ++ ++T F +N L GR P+++ L ++K ++ HR + Sbjct: 300 IVIDVK-RDANASIVLNKLYKMTMLQTSFGVNNVALVHGR-PRLLNLKDLIKHFVEHRHD 357 Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQ 427 V+ RR+ + ++ R IL+GL+IA NIDE+I IIR P ++ RF L+E Q Sbjct: 358 VVIRRTQYDLRKAKERAHILEGLIIASDNIDEVIKIIRAAKTPNDAISGLMERFQLSEIQ 417 Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487 AI+ +RLR L L + Q+ +E + + + ++ +L + + I E+ EVKE + Sbjct: 418 SRAIVEMRLRQLTGLMQDQLHAEYEEIQKQIAYLEEILVNDELCRKVIKDELIEVKEKYG 477 Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVD 539 RR+ E+ + + + + + + IS+ G+I R+ V Sbjct: 478 DE-----RRS---EIVYSSEEFNPEDFYADDEMIITISHMGYIKRTPLSEFRAQNRGGVG 529 Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLN 597 ++ D ++ A + ++ + GK Y L + G G AIQ L++++ Sbjct: 530 SKGTETRDADFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTKNSKGRAIQNLLNID 589 Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG---KTFLKVSSEEKMKLVV 654 + D V A+ L V + + + ++ T+ G KT L+ S + V Sbjct: 590 SD-DAVNAY--------LRVKNLNDQEFINSHYVLFCTKNGVIKKTLLEQYSRPRQNGVN 640 Query: 655 KVT--------------GDH-VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGIS 698 +T GD+ + + N + + F + M R GVR + + G Sbjct: 641 AITIREDDRVIEVRMTNGDNEIIIANRNGRAIRFHESAVRVMGRTATGVRGMTLDEDGQD 700 Query: 699 DV---ICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752 +V IC K E T + + + Y + + RGG G ++GK ++ Sbjct: 701 EVVGMICIKDPEAETIMVVSEQGYGKRSDIEDYRKTNRGGKGVKTMNITDKTGKLVT 757 >gi|182418313|ref|ZP_02949608.1| DNA gyrase subunit A [Clostridium butyricum 5521] gi|237666895|ref|ZP_04526880.1| DNA gyrase subunit A [Clostridium butyricum E4 str. BoNT E BL5262] gi|182377695|gb|EDT75239.1| DNA gyrase subunit A [Clostridium butyricum 5521] gi|237658094|gb|EEP55649.1| DNA gyrase subunit A [Clostridium butyricum E4 str. BoNT E BL5262] Length = 971 Score = 384 bits (986), Expect = e-104, Method: Compositional matrix adjust. Identities = 221/583 (37%), Positives = 351/583 (60%), Gaps = 25/583 (4%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 + N+ + L A+ E YL YA+ KERA+PD+RDG KPVHRRI++ + + Sbjct: 12 DNNIIGIPLEEAMPENYLPYAIEVAKERALPDVRDGLKPVHRRILYGAHMLKAFPDRPYY 71 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSARIVG+++GK HPHGD SVY+++V LAQ F R PLI G GN+G+IDGDSAAA RYTE Sbjct: 72 KSARIVGDILGKYHPHGDSSVYEAMVILAQDFSTRLPLIEGHGNWGSIDGDSAAAMRYTE 131 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 AR+ +A +L+ +D+D VD Y++ + EP V PS++PNLL NG GIAVG+AT+IP Sbjct: 132 ARLAPIAMEMLRDIDKDTVDMVPNYSDSEMEPKVLPSRYPNLLVNGAFGIAVGLATNIPP 191 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E+ + LA IDN +I+ ++L+EY+ GPD PTGGI++ +S++ +Y G G R Sbjct: 192 HNLGEVTDGVLAYIDNNDITTKELMEYVKGPDLPTGGILI-GEKSLLSAYETGEGKVPYR 250 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR----IPLLEDIRDESAED- 308 A+ +E++ G IV+TE PY+ KS++++ I+E+ KR + + DIRDES + Sbjct: 251 AKTNIEKLENGRVGIVITEFPYRRNKSKILQTISEMTGDKRHAKVLEGITDIRDESDRNG 310 Query: 309 VRIVLFPKNRSLDPD---LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365 +R V+ K +S+D D +++ +F +D++ NM LS G+ P+ M L I+K ++ Sbjct: 311 IRAVIEFK-KSVDEDNAEKILKYLFKKTDLQCNISFNMVALSNGK-PETMGLKTIIKHYV 368 Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFS 422 H++E++ RR+ + +R I++G + A +DE+IA IR+ + K ++ +F Sbjct: 369 EHQKEIVTRRTKKELDTATKRFHIVEGFIKAIDVLDEVIATIRSSNSKKNASENLIDKFG 428 Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482 TE Q AIL L L L LE + E L +K++ +L S K+ I E++EV Sbjct: 429 FTELQAQAILELMLYRLTGLEIKVFQKEYAELEKLIKKLEKILASEKELLRVIKTELKEV 488 Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSH---S 537 + +S + RRTT K +++ ++ +E + + +SN G+I+ LK++ + Sbjct: 489 CDKYSDA-----RRTTIISDDTKSKIDVEELIVVEEVM-ITVSNDGFIKRIPLKNYNRSN 542 Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL 580 D + ++EGD LK + ++T D +L+ + G Y N+ Sbjct: 543 SDPDDIEYREGDYLKYLISSNTKDNLLIFTNAGYMYQTKGINI 585 >gi|22299160|ref|NP_682407.1| DNA gyrase A subunit [Thermosynechococcus elongatus BP-1] gi|22295342|dbj|BAC09169.1| DNA gyrase A subunit [Thermosynechococcus elongatus BP-1] Length = 799 Score = 384 bits (986), Expect = e-104, Method: Compositional matrix adjust. Identities = 232/695 (33%), Positives = 382/695 (54%), Gaps = 46/695 (6%) Query: 10 NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69 + L V L ++ YL YA+S I RA+PD+RDG KPV RRI++AM E+GL Sbjct: 8 DLLTSGQVIPTPLHSEMQRSYLEYAMSVIVGRALPDVRDGLKPVQRRILYAMYELGLTPD 67 Query: 70 AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129 F+K AR+VG+V+GK HPHGDQ+VY++LVRL QPF RYPL++G GNFG+IDGD AA Sbjct: 68 RPFRKCARVVGDVLGKYHPHGDQAVYEALVRLVQPFSSRYPLLAGHGNFGSIDGDPPAAM 127 Query: 130 RYTEARMTQVAE-LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188 RYTE R+ +A ++LQ + E VDF ++ EP+V P++ P LL NG++GIAVGMA Sbjct: 128 RYTETRLAAIAHRMLLQNISEAIVDFAPNFDSSQEEPLVLPAQLPILLLNGSTGIAVGMA 187 Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248 T+IP HN+ E+ +A +ALID P +S+ +LL Y+ GPDFPTGG+IVE ++ +YR GRG Sbjct: 188 TNIPPHNLGEVVDALIALIDRPHLSLGELLTYLPGPDFPTGGVIVEG-AGLLRAYRTGRG 246 Query: 249 GFRVRARWCVEEV--GRGS---WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303 +R +E++ GRG IVVTE+PYQV K+ IEK+A+L+ R+ + D+RD Sbjct: 247 TITLRGVATLEDMAPGRGRHRRQGIVVTELPYQVNKAAWIEKVADLVNQGRLEGIADLRD 306 Query: 304 ES-AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362 ES E +R+V+ K R L+E ++ L+ ++ + +N+ L +G P+ + L IL Sbjct: 307 ESDREGLRVVIELK-RDAPAAQLLEQLYHLTALQVTYGINLMAL-VGNQPRQLSLKEILS 364 Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVS 419 E+L R + L R+ + R ++ GLLI+ ++++I I+R+ + ++ Sbjct: 365 EFLQFREQTLLRQYRHDLATAQARQHVVTGLLISLNAVEQVIEIVRSAADARAAQSELMI 424 Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479 R L++ Q A++ + LR L + E +++ E L + +L++ ++ + E+ Sbjct: 425 RLGLSDRQASALIAMPLRRLTQQERQELEREQAVLQGRIAHLQTLIHQRPERLKALKKEL 484 Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRG----WIRSLKS 535 R++K+ F G R T ++ + P + + G W+ S Sbjct: 485 RQLKKEF------GDPRLT--------------QILRETPAPEAVPDCGGDSLWLE--MS 522 Query: 536 HSVDLSALHFKE-GDSLKIALHAHTTDRILLLSTDGKAYTL-----PAGNLLSGRGHGEA 589 + DL ++ + L + A T+DR+ + + GK Y L P + G Sbjct: 523 YRGDLPLQTWRPWSEPLPLGFSAQTSDRLWVFTESGKVYPLSVERLPVTSHREGDRDQPL 582 Query: 590 IQLLIDLNHNQDIVTAFVYDSTC-KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE 648 + LL + + +++ +T KL++++ +G ++ S + +G K+ + + Sbjct: 583 LTLLPESAQGETLLSVIPSQATADKLILLTRQGRIKVIPSSSLQNLRGRGLQLTKLKAGD 642 Query: 649 KMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSR 683 + V+ GDH+ + ++ F + IP + R Sbjct: 643 TLGWVLPAQGDHLVLATSRGRVFHFFLPDIPVLGR 677 >gi|282852321|ref|ZP_06261663.1| DNA gyrase, A subunit [Lactobacillus gasseri 224-1] gi|282556063|gb|EFB61683.1| DNA gyrase, A subunit [Lactobacillus gasseri 224-1] Length = 829 Score = 384 bits (986), Expect = e-104, Method: Compositional matrix adjust. Identities = 239/720 (33%), Positives = 387/720 (53%), Gaps = 53/720 (7%) Query: 6 ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65 ++N N + ++ V L + +L YA+S I RA+PD+RDG KPV RRI++ M E+G Sbjct: 1 MANENQPQDHRIRNVDLTHTMRSSFLDYAMSVIVARALPDVRDGLKPVQRRILYGMHELG 60 Query: 66 LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125 + +KKSARIVGEV+GK HPHGD S+Y ++ +AQ F RY L+ G GNFG++DGD Sbjct: 61 VTPDKQYKKSARIVGEVMGKFHPHGDSSIYLAMAHMAQDFSYRYMLVDGHGNFGSVDGDE 120 Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185 AA RYTEA+M+++A +L+ ++++ +D++ Y++ ++EPVV P++ PNLL NG SGIAV Sbjct: 121 PAAMRYTEAKMSKIAVEMLRDINKETIDWQRNYDDTENEPVVLPARIPNLLVNGASGIAV 180 Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245 GM T+IP HN+ E+ L+DNP+++ + L++ I GPDFPTGGI++ R I +Y Sbjct: 181 GMTTNIPPHNLAEVISGIHMLMDNPDVTTKDLMKVIPGPDFPTGGIVM-GRGGIYRAYET 239 Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305 G+G VRA+ +E G IVV+E+PY V KS L++KIA+L K I + +RDES Sbjct: 240 GKGNIVVRAKTNIETEKNGRERIVVSELPYLVNKSELVKKIADLAREKIIDGITGVRDES 299 Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365 + + R +++ ++F + M+ F +NM + G P + L +L+ +L Sbjct: 300 DQTGMRITIDIRRDASASVVLNNLFKETQMQANFGMNMVAIVNG-APHFLTLKQMLEYYL 358 Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFS 422 H+ +V+ RR+ F ++ + R IL GL IA +IDEII IIR N D K ++ F Sbjct: 359 HHQEDVITRRTKFELKKAEARAHILAGLRIALDHIDEIIKIIRGSQNSDIAKAQLIQNFG 418 Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482 L + Q AIL++RL L LE +I++E +L A+ +L ++ I E+ ++ Sbjct: 419 LDDRQSQAILDMRLVRLTGLERDKIEAEYQDLQAKIADYKDILAKPERIDEIIYNELLDI 478 Query: 483 KEIFSKSTDLGRRRTTFCE---VSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539 ++ F RRT E VS D + +IE++ + + +++ G+I+ + + Sbjct: 479 QKRFGDD-----RRTKIAEGEAVSIED-----EDLIEQKDVLLTLTHNGYIKRMPADEFK 528 Query: 540 --------LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LP 576 + + ++ D + + + T D +L + GK Y+ LP Sbjct: 529 VQNRGGRGIKGMGVQDDDFINHLIFSSTHDFLLFFTNLGKVYSKKAYEIPEFGRNAKGLP 588 Query: 577 AGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR 636 NLL GE IQ +I++ D L V+ G + SE R Sbjct: 589 IVNLLE-LDKGEKIQAVINVPEGAD---------DNYLFFVTKMGTVKRTKVSEFQNIRR 638 Query: 637 KGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSR-GKGVRLQSYKD 694 G L + +++ V+ G ++G + + F+ + + M R GVR + +D Sbjct: 639 SGLIALTLRDGDELNNVLTTDGKQNILIGTHLGYAVTFNENDVRSMGRTAAGVRGINLRD 698 Score = 38.9 bits (89), Expect = 3.2, Method: Compositional matrix adjust. Identities = 44/161 (27%), Positives = 68/161 (42%), Gaps = 6/161 (3%) Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHN 599 L AL ++GD L L IL+ + G A T ++ S G A I+L N Sbjct: 641 LIALTLRDGDELNNVLTTDGKQNILIGTHLGYAVTFNENDVRS-MGRTAAGVRGINLRDN 699 Query: 600 QDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKV 656 +V + + + ++LV+S KG SE R GK + EK + V V Sbjct: 700 DYVVGSDILEPDSEVLVISEKGYGKRTAASEYPVKGRGGKGIKTANITEKNGPLAGVTVV 759 Query: 657 TGDH-VAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDG 695 GD + ++ ++ F +D + + R GVRL DG Sbjct: 760 NGDEDIMLITSAGVMIRFDVDDVSQTGRATLGVRLIKVDDG 800 >gi|116515057|ref|YP_802686.1| DNA gyrase, A subunit [Buchnera aphidicola str. Cc (Cinara cedri)] gi|116256911|gb|ABJ90593.1| DNA gyrase, A subunit [Buchnera aphidicola str. Cc (Cinara cedri)] Length = 827 Score = 384 bits (986), Expect = e-104, Method: Compositional matrix adjust. Identities = 256/716 (35%), Positives = 410/716 (57%), Gaps = 56/716 (7%) Query: 13 VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72 + + +K V++ L+ YL YA+S I RA+PD+RDG KPVHRRI+ AM + ++ + Sbjct: 4 IAKEIKQVNIEEELKRSYLDYAMSVIIGRALPDVRDGLKPVHRRILFAMYILNNEWNKPY 63 Query: 73 KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132 KKSARIVG+VIGK HPHGD +VYDS+VR+AQ F RY LI GQGNFG+IDGD AAA RYT Sbjct: 64 KKSARIVGDVIGKYHPHGDSAVYDSIVRMAQKFSLRYTLIDGQGNFGSIDGDPAAAMRYT 123 Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192 E RM+++A +L ++++ +DF Y+ + P + P+K PNLL NG+SGIAVGMAT+IP Sbjct: 124 EIRMSRIAHEMLSELEKNTIDFVLNYDGTEKIPEILPTKIPNLLINGSSGIAVGMATNIP 183 Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252 HN++E+ +A + NP IS+++L+ YI GPDFPT GII + I E+Y+ G+G V Sbjct: 184 PHNLKEVINGCIAYLYNPSISLKELMLYIPGPDFPTSGIIY-GKNGIKEAYKTGKGKIIV 242 Query: 253 RARWCVEEVGRGSW-CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VR 310 R+++ +E + +++ E+PYQV KS+LIEKIA L+ K+I + +IRDES +D +R Sbjct: 243 RSKYNIEINKKNKKESLIIYELPYQVNKSKLIEKIAILVKEKKINGITNIRDESDKDGMR 302 Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370 IV+ K + +++ ++ L+ ++T F +NM LS G+ P+ M L ILKE++ HR++ Sbjct: 303 IVIDIK-KDFISQIILNQLYTLTSLQTSFGINMVALSSGK-PKTMNLKKILKEFIKHRKK 360 Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN------------------EDK 412 ++ R+ F+++ ++++ +L+G IA NI+ II +I+N E+ Sbjct: 361 IIKRKCLFKLKKSNKKMHLLEGFAIALNNINTIIHLIKNSENHTIAKKKLKKINWKKENN 420 Query: 413 PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQW 472 F + Q AILN++L L LE+ +I E + L+ + K+ +L++ Sbjct: 421 SSKKNKKYFYFSNKQSLAILNIKLNKLTSLEKKKINLEYNKLIKKTIKLKKILSNKNILE 480 Query: 473 NQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR- 531 +I E+ E+K+ FS + R+T +S+ + ++ MI KE + V +S G+++ Sbjct: 481 KKIEKELNEIKKKFSDT-----RKTKI--ISKMSEINIED-MIVKETVVVTLSYSGYVKY 532 Query: 532 -------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGN 579 + K SA KE D + L A++ D IL S+ G K Y LP Sbjct: 533 QPISDYNAQKRGGRGKSAAKTKEEDYITNLLVANSHDTILCFSSRGLLYWMKVYQLPE-- 590 Query: 580 LLSGRGHGEAIQLLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTR 636 S G+ I L+ L + I T Y S+ + + ++ G F+ + S I Sbjct: 591 -TSRNARGKPIVNLLPLTSKERITTILPISKYKSSINIFMATALG--FVKKTSLIQFKKP 647 Query: 637 KGKTFLKVSSEEKMKLV-VKVT--GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVR 688 + + ++ + KL+ V +T +++ + K++ FS I +M R G+R Sbjct: 648 RNSGIIAINLRKNDKLIGVSLTTGNNNICMFTSKGKVVQFSEKTIRKMGRTASGIR 703 >gi|296159970|ref|ZP_06842790.1| DNA gyrase, A subunit [Burkholderia sp. Ch1-1] gi|295889716|gb|EFG69514.1| DNA gyrase, A subunit [Burkholderia sp. Ch1-1] Length = 866 Score = 384 bits (986), Expect = e-104, Method: Compositional matrix adjust. Identities = 225/602 (37%), Positives = 345/602 (57%), Gaps = 67/602 (11%) Query: 30 YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89 YL YA+S I RA+PD+RDG KPVHRR+++AM E+ D+ A+KKSARIVG+VIGK HPH Sbjct: 5 YLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNRAYKKSARIVGDVIGKYHPH 64 Query: 90 GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDE 149 GD +VYD++VR+AQ F RY L+ GQGNFG++DGD+AAA RYTE RM ++ +L +D+ Sbjct: 65 GDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAKIGHELLADIDK 124 Query: 150 DAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDN 209 + VDF Y+ ++EP + P++ PNLL NG+SGIAVGMAT+IP HN+ E+ +A L+ N Sbjct: 125 ETVDFTPNYDGSENEPAILPARIPNLLINGSSGIAVGMATNIPPHNLNEVVDACQHLLKN 184 Query: 210 PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS-WCI 268 PE +I++L+E + PDFPT GII + + YR GRG +RA EE+ RG I Sbjct: 185 PEATIDELIEIVPAPDFPTAGIIY-GVAGVRDGYRTGRGRVVMRALTHFEEIDRGQRMAI 243 Query: 269 VVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMES 328 +V E+PYQV K L+E+IAEL+ K++ + DIRDES + V+ R P++++ + Sbjct: 244 IVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKRGEVPEVVLNN 303 Query: 329 IFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVE 388 ++ + ++ F +NM L G+ P+++ L +L +L+HRREVL RR+ + ++ R Sbjct: 304 LYKATQLQDTFGMNMVALVDGQ-PKLLNLKEMLSCFLSHRREVLTRRTVYELRKARERGH 362 Query: 389 ILKGLLIAYLNIDEIIAIIRNEDKPKPV-----------------MVSR----------- 420 +L+GL +A NIDE IAII+ P P+ M++R Sbjct: 363 VLEGLAVALANIDEFIAIIKAAPTP-PIAKQELMARPWDSSLVREMLARAETENASAGGR 421 Query: 421 -------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKI 461 + L++ Q IL +RL+ L LE+ +I E ++A+ + Sbjct: 422 EAYRPDGLNPSFGMQSDGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEYREVMAQIADL 481 Query: 462 DSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPIT 521 +L + +I I V+E+ S + G R + E++ + T + +I + + Sbjct: 482 LDIL----ARPERITAII--VEELTSIKAEFGDARRSKIELNATELNT--EDLITPQEMV 533 Query: 522 VVISNRGWIRS--LKSHSVD------LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573 V +S+ G+++S L +S A KE D + A+T D IL S G+ Y Sbjct: 534 VTMSHAGYVKSQPLSEYSAQKRGGRGKQATAMKEDDWIDTLFIANTHDHILCFSNRGRVY 593 Query: 574 TL 575 ++ Sbjct: 594 SV 595 >gi|291547632|emb|CBL20740.1| DNA gyrase subunit A [Ruminococcus sp. SR1/5] Length = 850 Score = 384 bits (986), Expect = e-104, Method: Compositional matrix adjust. Identities = 233/632 (36%), Positives = 362/632 (57%), Gaps = 35/632 (5%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 + V V L ++E Y+ YA+S I RA+PD+RDG KPV RR++++M E+ +K Sbjct: 7 DKVHEVDLEKTMKESYIDYAMSVIASRALPDVRDGLKPVQRRVLYSMIELNNGPDKPHRK 66 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 ARIVG+ +GK HPHGD S+Y +LV +AQ + RYPL+ G GNFG++DGD AAA RYTEA Sbjct: 67 CARIVGDTMGKYHPHGDSSIYGALVNMAQEWSTRYPLVDGHGNFGSVDGDGAAAMRYTEA 126 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 R+++++ +L +++D VDF+ ++E + EPVV P++FPNLL NGT+GIAVGMAT+IP H Sbjct: 127 RLSKISMEMLADINKDTVDFQPNFDETEREPVVLPARFPNLLVNGTTGIAVGMATNIPPH 186 Query: 195 NVQEICEAALALIDN-----PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249 N++E A + +IDN E ++E+LLE + GPDFPTG I+ +R I E+YR GRG Sbjct: 187 NLRETINAVVKIIDNIVEEDRETTMEELLEIVKGPDFPTGATILGTR-GIEEAYRTGRGK 245 Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309 RVRA +E + G IVVTE+PY V K+RLIEKIAEL+ K+I + D+ D S+ + Sbjct: 246 IRVRAVTNIETLPNGKSRIVVTELPYLVNKARLIEKIAELVRDKKIDGITDLNDHSSREG 305 Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL--SMGRV-PQVMPLDGILKEWLA 366 + + + ++++ ++ + ++ F + M L + G + P+V+ L +L+ +L Sbjct: 306 MRICIDLRKDANANVILNLLYKHTQLQDTFGVIMLSLVPNHGSMEPKVLNLKEMLEYYLE 365 Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAII---RNEDKPKPVMVSRFSL 423 H+ V+ RR+ + + R IL+GLL A NIDE+I II RN K ++ RF L Sbjct: 366 HQENVVRRRTQYDLNKAQERAHILEGLLKALDNIDEVIRIIRGSRNVQIAKQELIDRFEL 425 Query: 424 TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483 T+ Q AI+++RLR+L LE ++++E L+ + K ++L K I EI + Sbjct: 426 TDVQAQAIVDMRLRALTGLEREKLEAEYAELMEKIRKFQAILADRKLLLRVIREEILAIA 485 Query: 484 EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKS 535 E + G R T D +T + +I +E + ++ G+I RS Sbjct: 486 EKY------GDDRKTSIGYDVYDIST--EDLIPRENTVIAMTKLGYIKRMTVDNFRSQNR 537 Query: 536 HSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEAIQLL 593 + + E D ++ L T ++ + G+ Y L + +GR G AI L Sbjct: 538 GGRGIKGMQTIEDDYIEELLMTTTHHYLMFFTNTGRVYRLKVYEIPEAGRTARGTAIINL 597 Query: 594 IDLNHNQDIVTAFV----YDSTCKLLVVSSKG 621 + L + I TA + Y+ L++ + KG Sbjct: 598 LQLAPGEKI-TAVIPLRKYEEGHYLMMATKKG 628 >gi|325518448|gb|EGC98150.1| DNA gyrase subunit A [Burkholderia sp. TJI49] Length = 851 Score = 384 bits (986), Expect = e-104, Method: Compositional matrix adjust. Identities = 227/611 (37%), Positives = 346/611 (56%), Gaps = 72/611 (11%) Query: 30 YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89 YL YA+S I RA+PD+RDG KPVHRR++ AM E+ D+ A+KKSARIVG+VIGK HPH Sbjct: 5 YLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRAYKKSARIVGDVIGKYHPH 64 Query: 90 GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDE 149 GD +VY+++VR+AQ F RY L+ GQGNFG+IDGD+AAA RYTE RM ++ +L +D+ Sbjct: 65 GDSAVYETIVRMAQDFSLRYMLVDGQGNFGSIDGDNAAAMRYTEIRMAKIGHELLSDIDK 124 Query: 150 DAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDN 209 + VDF Y+ + +P++ P++ PNLL NG+SGIAVGMAT+IP HN+ E+ +A L++N Sbjct: 125 ETVDFGPNYDGSEMQPLILPARIPNLLINGSSGIAVGMATNIPPHNLNEVVDACQHLLNN 184 Query: 210 PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS-WCI 268 PE +I++L+E I PDFPT GII + + YR GRG +RA EE+ RG I Sbjct: 185 PEATIDELIEIIPAPDFPTAGIIY-GVAGVRDGYRTGRGRVVMRAATHFEEIDRGQRMAI 243 Query: 269 VVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMES 328 +V E+PYQV K L+E+IAEL+ K++ + DIRDES + V+ R P++++ + Sbjct: 244 IVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKRGEVPEVVLNN 303 Query: 329 IFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVE 388 ++ + ++ F +NM L G+ P+++ L IL+ +L+HRREVL RR+ + ++ R Sbjct: 304 LYKATQLQDTFGMNMVALVDGQ-PKLLNLKEILQCFLSHRREVLTRRTVYELRKARERGH 362 Query: 389 ILKGLLIAYLNIDEIIAIIRNEDKPKPV-----------------MVSR----------- 420 +L+GL +A NIDE IAII+ P P+ M++R Sbjct: 363 VLEGLAVALANIDEFIAIIKAAPTP-PIAKQELMAKAWDSSLVREMLTRAESENAAAGGR 421 Query: 421 -------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKI 461 + L++ Q IL +RL+ L LE+ +I E +++A+ + Sbjct: 422 DAYRPEGLNPAFGMQGDGLYKLSDTQAQEILQMRLQRLTGLEQDKIIGEYRDVMAQIADL 481 Query: 462 DSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPIT 521 +L ++ I E+ VK F G R + E++ + T + +I + + Sbjct: 482 LDILARPERITTMIGDELTSVKAEF------GDARRSRIELNATELNT--EDLITPQDMV 533 Query: 522 VVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG--- 570 V +S+ G++ R+ K A KE D ++ A+T D +L S G Sbjct: 534 VTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYMLCFSNRGRVY 593 Query: 571 --KAYTLPAGN 579 K Y +P G+ Sbjct: 594 WIKVYEVPQGS 604 >gi|189465631|ref|ZP_03014416.1| hypothetical protein BACINT_01989 [Bacteroides intestinalis DSM 17393] gi|189437905|gb|EDV06890.1| hypothetical protein BACINT_01989 [Bacteroides intestinalis DSM 17393] Length = 856 Score = 384 bits (986), Expect = e-104, Method: Compositional matrix adjust. Identities = 254/777 (32%), Positives = 416/777 (53%), Gaps = 57/777 (7%) Query: 12 LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71 L ++ + +++ ++ Y+ Y++S I RA+PD+RDGFKPVHRRI+ M +G Sbjct: 2 LEQDRIIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILFGMMGLGNTSDKP 61 Query: 72 FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131 +KKSAR+VGEV+GK HPHGD SVY +LVR+AQP+ RY ++ GQGN+G++DGDSAAA RY Sbjct: 62 YKKSARVVGEVLGKYHPHGDSSVYGALVRMAQPWAMRYMVVDGQGNYGSVDGDSAAAMRY 121 Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191 TE R+ ++ E ++Q +D++ VD ++ +++ EP V P++ PNLL NG SGIAVGMAT++ Sbjct: 122 TECRLRKIGEDMMQDLDKETVDMQNNFDDSLQEPTVMPTRIPNLLVNGASGIAVGMATNM 181 Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251 P+HN+ E+ +A +A I+N +I IE+L+ Y+ PDFPTGG I + E+Y GRG Sbjct: 182 PTHNLSEVIDACIAYIENNDIEIEELMNYVKAPDFPTGGYIY-GMSGVREAYLTGRGRVI 240 Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVR 310 +RAR +E IV+TEIPY V K+ LI+ IA+L K+I + + DES E +R Sbjct: 241 MRARAEIETSSTHDK-IVITEIPYGVNKAELIKNIADLANDKKIEGISNANDESDREGMR 299 Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370 IV+ K R + +++ ++ ++ ++T F +N L GR P+++ L ++K ++ HR E Sbjct: 300 IVIDIK-RDANASVVLNKLYKMTLLQTSFSVNNVALVHGR-PRLLNLKDMIKYFVEHRHE 357 Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQ 427 V+ RR+ + ++ R IL+GL+IA NIDE+I IIR P ++ RF LTE Q Sbjct: 358 VVIRRTQYDLRKAKERAHILEGLIIASDNIDEVIRIIRAAKTPNDAIAGLMERFQLTEIQ 417 Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487 AI+ +RLR L L + Q+ +E + ++ + +L++ + I E+ EVK + Sbjct: 418 SRAIVEMRLRQLTGLMQDQLHAEYEEVMKLIAYYEEILSNDELCRKVITDELIEVKAKYG 477 Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVD 539 RR+ E+ + + + + + + IS+ G+I R+ V Sbjct: 478 DE-----RRS---EIVYSSEEFNPEDFYADDEMIITISHMGYIKRTPLSEFRAQNRGGVG 529 Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLN 597 ++ D ++ A + ++ + GK Y L + G G AIQ L++++ Sbjct: 530 SKGTDTRDADFIEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTKNSKGRAIQNLLNID 589 Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG---KTFLKVSSEEKMKLVV 654 + D V A+ L V + + + ++ T+ G KT L+ S + V Sbjct: 590 SD-DAVNAY--------LRVKNLSDTDFINSHYVLFCTKNGVIKKTLLEQYSRPRQNGVN 640 Query: 655 KVT--------------GDH-VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGIS 698 +T GD+ + + N + + F + M R GVR + + G Sbjct: 641 AITIREDDRVIEVRMTNGDNEIIIANRNGRAIRFHESAVRVMGRTATGVRGMTLDEDGQD 700 Query: 699 DV---ICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752 +V IC K E T + + + Y + + RGG G ++GK ++ Sbjct: 701 EVVGMICIKDPEAETIMVVSEQGYGKRSDIEDYRKTNRGGKGVKTMNITDKTGKLVT 757 >gi|134295072|ref|YP_001118807.1| DNA gyrase subunit A [Burkholderia vietnamiensis G4] gi|134138229|gb|ABO53972.1| DNA gyrase subunit A [Burkholderia vietnamiensis G4] Length = 867 Score = 384 bits (986), Expect = e-104, Method: Compositional matrix adjust. Identities = 232/621 (37%), Positives = 346/621 (55%), Gaps = 72/621 (11%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 SL + YL YA+S I RA+PD+RDG KPVHRR++ AM E+ D+ A+KKSARIV Sbjct: 11 TSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRAYKKSARIV 70 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGD +VYD++VR+AQ F RY LI GQGNFG+IDGD+AAA RYTE RM ++ Sbjct: 71 GDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLIDGQGNFGSIDGDNAAAMRYTEIRMAKI 130 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 +L +D++ VDF Y+ +++P V PS+ PNLL NG+SGIAVGMAT+IP HN+ E+ Sbjct: 131 GHELLADIDKETVDFEPNYDGNETQPSVLPSRIPNLLINGSSGIAVGMATNIPPHNLNEV 190 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 +A L++NP +I++L+E I PDFPT GII + + YR GRG +RA E Sbjct: 191 VDACQHLLNNPGATIDELIEIIPAPDFPTAGIIY-GVAGVRDGYRTGRGRVVMRAATHFE 249 Query: 260 EVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318 E+ RG I+V E+PYQV K L+E+IAEL+ K++ + DIRDES + V+ R Sbjct: 250 EIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKR 309 Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378 P++++ +++ + ++ F +NM L G+ P+++ L IL+ +L+HRREVL RR+ + Sbjct: 310 GEVPEVVLNNLYKATQLQDTFGMNMVALVDGQ-PKLLNLKEILQCFLSHRREVLTRRTIY 368 Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV-----------------MVSR- 420 ++ R +L+GL +A NIDE I II+ P P+ M++R Sbjct: 369 ELRKARERGHVLEGLAVALANIDEFIEIIKAAPTP-PIAKQGLMERSWDSSLVREMLARA 427 Query: 421 -----------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451 + L++ Q IL +RL+ L LE+ +I E Sbjct: 428 ETENAAAGGRAAYRPEGLNPAFGMQGDGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEY 487 Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511 ++A+ + +L ++ I E+ VK F G R + E++ + T Sbjct: 488 REVMAQIADLLDILARPERITTMIGEELTSVKAEF------GDARRSKIELNATELNT-- 539 Query: 512 QAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRI 563 + +I + + V +S+ G++ R+ K A KE D ++ A+T D I Sbjct: 540 EDLITPQDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYI 599 Query: 564 LLLSTDG-----KAYTLPAGN 579 L S G K Y +P G+ Sbjct: 600 LCFSNRGRVYWVKVYEVPQGS 620 >gi|167751436|ref|ZP_02423563.1| hypothetical protein EUBSIR_02432 [Eubacterium siraeum DSM 15702] gi|167655682|gb|EDR99811.1| hypothetical protein EUBSIR_02432 [Eubacterium siraeum DSM 15702] Length = 878 Score = 384 bits (986), Expect = e-104, Method: Compositional matrix adjust. Identities = 232/633 (36%), Positives = 354/633 (55%), Gaps = 62/633 (9%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 E + V + + E +L Y+++ + RA+PD+RDG KPVHRRII+ M+E ++K Sbjct: 13 EKLIQVDIEKEMRESFLQYSMAVLVSRALPDVRDGMKPVHRRIIYTMNEADNTSSKPYRK 72 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 A VGEV+GK HPHGD SVYD+LVRLAQ F RYPLI G GNFG++DGD AAYRYTEA Sbjct: 73 CAYTVGEVLGKYHPHGDASVYDALVRLAQDFSMRYPLIDGHGNFGSVDGDPPAAYRYTEA 132 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 RM ++A +L+ + +D +D+ Y+++ EP V P KFPNLL NG+ GIAVGMAT+IP H Sbjct: 133 RMAKIASELLKDIKKDTIDWGKNYDDKLDEPTVLPVKFPNLLVNGSVGIAVGMATNIPPH 192 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 N+ E+C+A +A +DNPE SIE++L+YI GPDFPTGGII+ I +Y GRG +R Sbjct: 193 NLNEVCDAIVARMDNPECSIEEILQYIKGPDFPTGGIIM-GYSGIRSAYYTGRGKITLRG 251 Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314 + + E G S I+VTEIPY V KS+L+E +L+ KRI + ++RDES +D +++ Sbjct: 252 KAEIVEEGNHSR-IIVTEIPYMVNKSKLLETTGQLMRDKRIEGISNLRDESDKDGMRIVY 310 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 R ++ +++ ++ + ++ + M L G P+ + L IL ++A +++++ R Sbjct: 311 ELKRDVNAQVVLNKLYSFTQLQDTVGVIMIALVNGE-PKQLTLLEILDNYIAFQKQIITR 369 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRF---------- 421 R++F ++ R IL+G L+A NIDE+I+I+R+ + K ++ RF Sbjct: 370 RTAFDLKKARERAHILQGFLLAIDNIDEVISILRSSKSVQEGKERLMERFKEDDLAKLLQ 429 Query: 422 ----------------SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLL 465 L+E Q DAI+ +RL L LE ++ SEL ++ + +L Sbjct: 430 RAMGENYKDVHFEHEIGLSEEQADAIVQMRLGQLTGLERDKVISELAEIMEKINDFLDIL 489 Query: 466 NSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVIS 525 +S ++ I EI +KE + RRT VS + +I +E + + Sbjct: 490 SSDERVKEIIKEEITAIKEKYGDE-----RRTAIEPVS---GEVDIEDLIPEEECVLTYT 541 Query: 526 NRGWIRSLKSHSVD-----------LSALHFKEGDSLKIALHAHTTDRILLLSTDG---- 570 N G+I K VD +S + +E D ++ + T D IL ++ G Sbjct: 542 NIGYI---KRQPVDVYNLQKRGGKGVSGMKQREEDFVEDMFISSTHDNILFITNYGNMYK 598 Query: 571 -KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602 K Y +P G S + G I L+ L+ + I Sbjct: 599 LKCYEVPEG---SKQSRGTNIVNLLQLDEGERI 628 >gi|332668539|ref|YP_004451546.1| DNA gyrase subunit A [Cellulomonas fimi ATCC 484] gi|332337576|gb|AEE44159.1| DNA gyrase, A subunit [Cellulomonas fimi ATCC 484] Length = 870 Score = 384 bits (986), Expect = e-104, Method: Compositional matrix adjust. Identities = 236/670 (35%), Positives = 378/670 (56%), Gaps = 64/670 (9%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 ++ V L+ ++ YL YA+S I RA+PD+RDG KPVHRR+++AM + G F K + Sbjct: 13 IEQVDLQLEMQRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMYDGGYRPDRQFSKCS 72 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+V+GK HPHGD ++YD+LVRL Q + RYPL++GQGNFG+ D AAA RYTE +M Sbjct: 73 RVVGDVMGKYHPHGDSAIYDALVRLVQDWSLRYPLVAGQGNFGSPGDDPAAAPRYTECKM 132 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 ++ +++ +DED VDF D Y+ EP+V P++FPNLL NG++GIAVGMAT+IP HN+ Sbjct: 133 APLSMEMVRDIDEDTVDFGDNYDGRTQEPLVLPARFPNLLVNGSAGIAVGMATNIPPHNL 192 Query: 197 QEICEAALALIDNPEISIEKLLEYII----GPDFPTGGIIVESRESIVESYRLGRGGFRV 252 +E+ + +D+PE + E+LL ++ GPDFPTG I+ R I E+YR GRG + Sbjct: 193 REVADGVQWYLDHPEATKEELLAALLTRIKGPDFPTGATILGHR-GIDEAYRTGRGSITM 251 Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV--R 310 RA VEE+ +G C+VVTE+PYQV L +KIA+L+ R+ + DIRDE++ R Sbjct: 252 RAVVNVEEI-QGRICLVVTELPYQVNPDTLAKKIADLVKENRVTGIADIRDETSGRTGQR 310 Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370 +V+ K R +++ +++ + ++ F NM L G VP+ + +D ++ W AH+ E Sbjct: 311 LVIVLK-RDAVAKVVLNNLYKHTQLQDTFGANMLALVDG-VPRTLSIDAFVRHWTAHQLE 368 Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQ 427 V+ RR+ +R++ + ++ I +G L A +DE+IA+IR + D+ + ++ + E Q Sbjct: 369 VIQRRTRYRLRKAEEQIHIYRGYLKALDALDEVIALIRRSPDADEARTGLMELLGVDEVQ 428 Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487 +AILNL+LR L L+ +I D L A+ + +++L S ++Q ++ E+RE+ + + Sbjct: 429 ANAILNLQLRRLAALQRQEITQRHDELQAQIVEFNAILASDERQRTIVSDELREIVDKYG 488 Query: 488 KSTDLGRRRTTFC----EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV----- 538 RRTT EVS D +I +E + V I+ G+ + +S + Sbjct: 489 DE-----RRTTILPFDGEVSVED-------LIAEEEMVVTITRGGYAKRTRSDNYRAQRR 536 Query: 539 ---DLSALHFKEGDSLKIALHAHTTDRILLLSTD------GKAYTLPAG----------N 579 + +E D + TT LL T+ KAY LP G N Sbjct: 537 GGKGVRGAQLRE-DDIVDHFFVTTTHHWLLFFTNLGRVYRAKAYELPEGGRDAKGQHVAN 595 Query: 580 LLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGK 639 LL+ + GE I ++D+ + Y+ L++ + +G +E +N G Sbjct: 596 LLAFQ-PGETIAQVLDVRN---------YEQAEHLVLATQRGLVKKTRLTEYDSNRSGGV 645 Query: 640 TFLKVSSEEK 649 + + +E+ Sbjct: 646 IAINLREDEE 655 >gi|167619125|ref|ZP_02387756.1| DNA gyrase subunit A [Burkholderia thailandensis Bt4] Length = 850 Score = 384 bits (985), Expect = e-104, Method: Compositional matrix adjust. Identities = 228/615 (37%), Positives = 347/615 (56%), Gaps = 72/615 (11%) Query: 26 LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85 + + YL YA+S I RA+PD+RDG KPVHRR++ AM E+ D+ +KKSARIVG+VIGK Sbjct: 1 MRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRPYKKSARIVGDVIGK 60 Query: 86 LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145 HPHGD +VYD++VR+AQ F RY L+ GQGNFG++DGD+AAA RYTE RM Q+ +L Sbjct: 61 YHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAQIGHELLA 120 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 +D++ VDF Y+ + +P++ PS+ PNLL NG+SGIAVGMAT+IP HN+ E+ +A L Sbjct: 121 DIDKETVDFGPNYDGSEMQPLILPSRIPNLLINGSSGIAVGMATNIPPHNLNEVVDACLY 180 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265 L++NP+ S+++L+E I PDFPT GII + + YR GRG +RA EE+ RG Sbjct: 181 LLNNPQASVDELIEIIPAPDFPTAGIIY-GVAGVRDGYRTGRGRVVMRAATHFEEIDRGQ 239 Query: 266 -WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDL 324 I+V E+PYQV K L+E+IAEL+ K++ + DIRDES + V+ R P++ Sbjct: 240 RMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKRGEVPEV 299 Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384 ++ +++ + ++ F +NM L + P+++ L IL+ +L+HRREVL RR+ + ++ Sbjct: 300 VLNNLYKATQLQDTFGMNMVAL-VDNQPKLLNLREILQCFLSHRREVLTRRTVYELRKAR 358 Query: 385 RRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV-----------------MVSR------- 420 R +L+GL +A NIDE IAII+ P P+ M++R Sbjct: 359 ERGHVLEGLAVALANIDEFIAIIKAAPTP-PIAKQELMAKSWDSSLVREMLTRAEAENAA 417 Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457 + L++ Q IL +RL+ L LE+ +I E +++A+ Sbjct: 418 AGGRAAYRPEGLSPAFGMQGDGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEYRDVMAQ 477 Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517 + +L ++ I E+ VK F G R + E++ + T + +I Sbjct: 478 IADLLDILARPERITVMIGEELAAVKAEF------GDARRSKIELNATELNT--EDLITP 529 Query: 518 EPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569 + + V +S+ G++ R+ K A KE D ++ A+T D IL S Sbjct: 530 QDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYILCFSNR 589 Query: 570 G-----KAYTLPAGN 579 G K Y +P G+ Sbjct: 590 GRVYWVKVYEVPQGS 604 >gi|113866815|ref|YP_725304.1| DNA gyrase subunit A [Ralstonia eutropha H16] gi|113525591|emb|CAJ91936.1| DNA gyrase subunit A [Ralstonia eutropha H16] Length = 888 Score = 384 bits (985), Expect = e-104, Method: Compositional matrix adjust. Identities = 255/741 (34%), Positives = 396/741 (53%), Gaps = 80/741 (10%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 VSL + YL YA+S I RA+PD+RDG KPVHRR++ AM E+ D+ +KKSARIV Sbjct: 11 VSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRPYKKSARIV 70 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGD +VYD++VR+AQ F RY L+ GQGNFG++DGD+AAA RYTE R+ ++ Sbjct: 71 GDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRLAKI 130 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A +L +D++ VDF Y+ + EP + P++ PNLL NG+SGIAVGMAT+IP HN+ EI Sbjct: 131 AHEMLFDIDKETVDFDSNYDGSEKEPSILPARIPNLLINGSSGIAVGMATNIPPHNLNEI 190 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 + L L+ NP+ ++++L+E I PDFPT GII + + E YR GRG +RA+ E Sbjct: 191 VDGCLHLLRNPQATVDELIELIPAPDFPTAGIIY-GIQGVREGYRTGRGRVVMRAKTHFE 249 Query: 260 EVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318 ++ RG I+V E+PYQV K L+E+IAEL+ K+I + DIRDES + V+ R Sbjct: 250 DIDRGQRQAIIVDELPYQVNKRTLLERIAELVTEKKIEGISDIRDESDKSGMRVVIELKR 309 Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378 + P++++ +++ + ++ F +NM L + R P+++ L +L+ +LAHRREV+ RR+ F Sbjct: 310 NEVPEVVLNNLYKNTQLQDTFGMNMVAL-VDRQPRLLNLRQMLEYFLAHRREVVTRRTVF 368 Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV-----------------MVSR- 420 ++ R +L+GL +A NIDE IAII+ P P+ M++R Sbjct: 369 ELRKARERGHVLEGLAVALANIDEFIAIIKAAPTP-PIAKQELMAKAWDSALVREMLARA 427 Query: 421 ---------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453 + L++ Q IL +RL+ L LE+ +I E + Sbjct: 428 EGETPGGRASYRPDGLPPVFGMQADGLYRLSDGQAQEILQMRLQRLTGLEQDKIVQEYRD 487 Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513 ++A + +L ++ I E+ ++ F G R + E++ + T + Sbjct: 488 IMAVITDLLDILARPERITAIIVDELTAIRAEF------GDERRSQIELNATELDT--ED 539 Query: 514 MIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565 +I + + V +S+ G++ R+ K A KE D + A+T D IL Sbjct: 540 LITPQDMVVTLSHSGYMKSQPISEYRAQKRGGRGKQAAATKEDDWIDTLFVANTHDYILC 599 Query: 566 LSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD---IVTAFVYDSTCKLLVV 617 S G K Y +P G S G I + L+ + I+ +D+ + + Sbjct: 600 FSNRGRLYWLKVYEVPQG---SRNSRGRPIVNMFPLSEGEKINVILPVKQFDAEHFIFMA 656 Query: 618 SSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT-GDH-VAVVGENRKLLIFSI 675 +++G +E +N RK E + VT G H V + + K + F Sbjct: 657 TARGTVKKTALTE-FSNPRKAGIIAVDLDEGDYLIGAAVTDGQHDVMLFSDAGKAVRFDE 715 Query: 676 DQIPEMSR-GKGVRLQSYKDG 695 + + M R +GVR + +DG Sbjct: 716 NDVRPMGRQARGVRGMNLEDG 736 >gi|238026529|ref|YP_002910760.1| DNA gyrase subunit A [Burkholderia glumae BGR1] gi|37514955|dbj|BAC98434.1| GyrA protein [Burkholderia glumae] gi|237875723|gb|ACR28056.1| GyrA protein [Burkholderia glumae BGR1] Length = 869 Score = 384 bits (985), Expect = e-104, Method: Compositional matrix adjust. Identities = 231/621 (37%), Positives = 347/621 (55%), Gaps = 72/621 (11%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 +SL + YL YA+S I RA+PD+RDG KPVHRR++ AM E+ D+ A+KKSARIV Sbjct: 11 ISLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRAYKKSARIV 70 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGD +VYD++VR+AQ F RY L+ GQGNFG++DGD+AAA RYTE RM ++ Sbjct: 71 GDVIGKYHPHGDSAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAKI 130 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 +L +D++ VDF Y+ +SEP + P++ PNLL NG+SGIAVGMAT+IP HN+ E+ Sbjct: 131 GHELLADIDKETVDFGPNYDGSESEPTILPARIPNLLINGSSGIAVGMATNIPPHNLSEV 190 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 +A L+ NPE ++++L+E I PDFPT GII + + YR GRG +RA E Sbjct: 191 VDACHHLLANPEATVDELIEIIPAPDFPTAGIIY-GVAGVRDGYRTGRGRVVMRAATHFE 249 Query: 260 EVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318 E+ RG I+V E+PYQV K L+E+IAEL+ K++ + DIRDES + V+ R Sbjct: 250 EIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKR 309 Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378 P++++ +++ + ++ F +NM L G+ P+++ L +L +LAHRREVL RR+ + Sbjct: 310 GEVPEVVLNNLYKSTQLQDTFGMNMVALVDGQ-PKLLNLKEMLVCFLAHRREVLTRRTIY 368 Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV-----------------MVSR- 420 ++ R +L+GL +A NIDE I II+ P P+ M++R Sbjct: 369 ELRKARERGHVLEGLAVALANIDEFIEIIKAAPTP-PIARQALMAKSWDSSLVREMLTRA 427 Query: 421 -----------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451 ++L+E Q IL +RL+ L LE+ +I E Sbjct: 428 ETENAAAGGREAYRPEGLNAAFGMQADGQYNLSETQAQEILQMRLQRLTGLEQDKIIGEY 487 Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511 ++A+ + +L ++ I E+ VK F G R + E++ + T Sbjct: 488 REVMAQIADLLDILARPERITTIITEELTAVKAEF------GDARRSKIELNATELNT-- 539 Query: 512 QAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRI 563 + +I + + V +S+ G++ R+ K A KE D ++ A+T D I Sbjct: 540 EDLITPQDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYI 599 Query: 564 LLLSTDG-----KAYTLPAGN 579 L S G K Y +P G+ Sbjct: 600 LCFSNRGRVYWVKVYEVPQGS 620 >gi|150019135|ref|YP_001311389.1| DNA topoisomerase IV subunit A [Clostridium beijerinckii NCIMB 8052] gi|149905600|gb|ABR36433.1| DNA topoisomerase (ATP-hydrolyzing) [Clostridium beijerinckii NCIMB 8052] Length = 970 Score = 384 bits (985), Expect = e-104, Method: Compositional matrix adjust. Identities = 225/616 (36%), Positives = 362/616 (58%), Gaps = 27/616 (4%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 + N+ + L A+ E YL YA+ K+RA+PD+RDG KPVHRRI++ + + Sbjct: 12 DNNIIGIPLEEAMPENYLPYAIEVAKDRALPDVRDGLKPVHRRILYGSYMLKAFPDRPYY 71 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSARIVG+++GK HPHGD SVY+S+V LAQ F R PLI G GN+G+IDGD AAA RYTE Sbjct: 72 KSARIVGDILGKYHPHGDSSVYESMVILAQDFSTRAPLIEGHGNWGSIDGDGAAAMRYTE 131 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 AR++ +A +L+ +++D V+ Y++ + EP V PS++PNLL NG GIAVG+AT+IP Sbjct: 132 ARLSPIAMEMLRDIEKDTVEMVPNYSDSEMEPKVLPSRYPNLLVNGAFGIAVGLATNIPP 191 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E+ E LA IDN EI+ +L++YI GPD PTGGI++ +SI+ +Y G G R Sbjct: 192 HNLGEVTEGVLAYIDNNEITTSELMKYIKGPDLPTGGILI-GEKSILSAYETGEGKVAYR 250 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR----IPLLEDIRDESAED- 308 A+ +E++ G I++TE PY+ KSR+++ I+E+ KR + + DIRDES Sbjct: 251 AKTSIEKLENGRIGIIITEFPYRRNKSRILQTISEMTGDKRHAKALESITDIRDESDRSG 310 Query: 309 VRIVL-FPKNRSLD-PDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366 +R V+ KN D D +++ +F +D++ NM L+ G+ P+ M L I++ ++ Sbjct: 311 IRAVIELKKNADEDVADKVLKYLFKKTDLQCNISFNMVALANGK-PETMSLKAIIRYYVE 369 Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSL 423 H++E++ RR+ + +R I++G + A +DE+IA IR+ K ++S+F Sbjct: 370 HQKEIITRRTQKELDVAKKRHHIVEGFIKAISVLDEVIATIRSSKSKKDASENLISKFGF 429 Query: 424 TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483 +E Q AIL L L L LE + E L +K++ +L+S K+ + E++E+ Sbjct: 430 SEAQAQAILELMLYRLTGLEIEIFEKEYAQLEKLIKKLEKILSSEKELLKVVKSELKEIS 489 Query: 484 EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSH---SV 538 + + RRT K +++ +I +E + V IS G+++ LK++ S Sbjct: 490 DKYGND-----RRTEIIHDDNESKIDVEELIIVEE-VMVTISKDGFVKRIPLKNYTRSSS 543 Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLI-D 595 + + ++EGDSLK ++++T D +L+ + G Y N+ + + G+ + +I Sbjct: 544 NPEDIEYREGDSLKYLINSNTKDTLLVFTDKGFMYQTKGINIPEMRWKEKGDRLDEIIKS 603 Query: 596 LN-HNQDIVTAFVYDS 610 LN N+ I+ A D+ Sbjct: 604 LNLDNEKIIAAISIDN 619 >gi|302535566|ref|ZP_07287908.1| DNA gyrase subunit A [Streptomyces sp. C] gi|302444461|gb|EFL16277.1| DNA gyrase subunit A [Streptomyces sp. C] Length = 874 Score = 384 bits (985), Expect = e-104, Method: Compositional matrix adjust. Identities = 231/632 (36%), Positives = 361/632 (57%), Gaps = 44/632 (6%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 ++ V L ++ YL YA+S I RA+PD+RDG KPVHRR+++AM + G F K A Sbjct: 21 IEPVGLETEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMYDGGYRPEKGFYKCA 80 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+V+G HPHGD S+YD+LVRLAQP+ R PL+ GNFG+ D AAA RYTE ++ Sbjct: 81 RVVGDVMGTYHPHGDSSIYDALVRLAQPWSMRMPLVDSNGNFGSPGNDPAAAMRYTECKL 140 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 +A +L+ +DE+ VDF+D Y+ + EP V P++FPNLL NG++GIAVGMAT+IP HN+ Sbjct: 141 MPLAMEMLRDIDEETVDFQDNYDGRNQEPTVLPARFPNLLVNGSAGIAVGMATNIPPHNL 200 Query: 197 QEICEAALALIDNPEISIEK----LLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252 +E+ A +++PE S E+ L+E I GPDFPTG ++V R+ I E+YR GRG + Sbjct: 201 REVAAGAQWALEHPEASHEELQDALIERIKGPDFPTGALVV-GRKGIEEAYRTGRGSITM 259 Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV--R 310 RA VEE+ + C+VVTE+PYQ L +KIA+L+ +I + D+RDE++ R Sbjct: 260 RAVVEVEEI-QNRQCLVVTELPYQTNPDNLAQKIADLVKDGKIGGIADVRDETSSRTGQR 318 Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370 +V+ K R +++ +++ +D++T F NM L G VP+ + +D ++ W+ H+ E Sbjct: 319 LVIVLK-RDAVAKVVLNNLYKHTDLQTNFGANMLALVDG-VPRTLSIDAFIRHWVQHQIE 376 Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQ 427 V+ RR+ FR++ + R IL+GLL A IDE+IA+IR + + ++ + E Q Sbjct: 377 VIVRRTRFRLRKAEERAHILRGLLKALDAIDEVIALIRRSNTVEIAREGLMGLLEIDEIQ 436 Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487 +AIL ++LR L LE +I +E D L A+ + +++L S ++Q + ++ E+ + E + Sbjct: 437 ANAILEMQLRRLAALERQKIVAEHDELQAKINEYNAILASPEKQRSIVSEELAAIVEKYG 496 Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVD 539 RR+ D + +I +E I V I++ G++ RS K Sbjct: 497 DD-----RRSKLVPF---DGDMSIEDLIAEEDIVVTITHGGYVKRTKTEDYRSQKRGGKG 548 Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTD------GKAYTLPAGNLLSGR-GHGEAIQL 592 + K+ D L TT LL T+ KAY LP +GR G+ + Sbjct: 549 VRGTKLKQ-DDLVDHFFVSTTHHWLLFFTNKGRVYRSKAYELPD----AGRDARGQHVAN 603 Query: 593 LIDLNHNQDIVTAFV---YDSTCKLLVVSSKG 621 L+ ++ I Y++ L++ + G Sbjct: 604 LLAFQPDEKIAQVLAIRDYEAAPYLILATKGG 635 >gi|323526962|ref|YP_004229115.1| DNA gyrase subunit A [Burkholderia sp. CCGE1001] gi|323383964|gb|ADX56055.1| DNA gyrase, A subunit [Burkholderia sp. CCGE1001] Length = 862 Score = 384 bits (985), Expect = e-104, Method: Compositional matrix adjust. Identities = 229/611 (37%), Positives = 345/611 (56%), Gaps = 72/611 (11%) Query: 30 YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89 YL YA+S I RA+PD+RDG KPVHRR+++AM E+ D+ A+KKSARIVG+VIGK HPH Sbjct: 5 YLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNRAYKKSARIVGDVIGKYHPH 64 Query: 90 GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDE 149 GD +VYD++VR+AQ F RY L+ GQGNFG++DGD+AAA RYTE RM ++ +L +D+ Sbjct: 65 GDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAKIGHELLADIDK 124 Query: 150 DAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDN 209 + VDF Y+ ++EP + P++ PNLL NG+SGIAVGMAT+IP HN+ E+ +A L+ N Sbjct: 125 ETVDFTPNYDGSENEPAILPARIPNLLINGSSGIAVGMATNIPPHNLNEVVDACQHLLKN 184 Query: 210 PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS-WCI 268 PE +I++L+E I PDFPT GII + + YR GRG +RA EE+ RG I Sbjct: 185 PEATIDELIEIIPAPDFPTAGIIY-GVAGVRDGYRTGRGRVVMRALTHFEEIDRGQRMAI 243 Query: 269 VVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMES 328 +V E+PYQV K L+E+IAEL+ K++ + DIRDES + V+ R P++++ + Sbjct: 244 IVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKRGEVPEVVLNN 303 Query: 329 IFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVE 388 ++ + ++ F +NM L G+ P+++ L +L +L+HRREVL RR+ + ++ R Sbjct: 304 LYKATQLQDTFGMNMVALVDGQ-PKLLNLKEMLSCFLSHRREVLTRRTVYELRKARERGH 362 Query: 389 ILKGLLIAYLNIDEIIAIIRNEDKPKPV-----------------MVSR----------- 420 +L+GL +A NIDE IAII+ P P+ M+SR Sbjct: 363 VLEGLAVALANIDEFIAIIKAAPTP-PIAKQELMARPWDSSLVREMLSRAETENASAGGR 421 Query: 421 -------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKI 461 + L++ Q IL +RL+ L LE+ +I E +++A+ + Sbjct: 422 DAYRPDGLNPSFGMQADGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEYRDVMAQIADL 481 Query: 462 DSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPIT 521 +L + +I I V E+ S + G R + E++ + T + +I + + Sbjct: 482 LDIL----ARPERITAII--VDELTSIKAEFGDARRSKIELNATELNT--EDLITPQEMV 533 Query: 522 VVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG--- 570 V +S+ G++ R+ K A KE D + A+T D IL S G Sbjct: 534 VTMSHAGYVKSQPLSEYRAQKRGGRGKQATSMKEDDWIDTLFIANTHDHILCFSNRGRVY 593 Query: 571 --KAYTLPAGN 579 K Y +P G+ Sbjct: 594 WVKVYEVPQGS 604 >gi|254181083|ref|ZP_04887681.1| DNA gyrase, A subunit [Burkholderia pseudomallei 1655] gi|184211622|gb|EDU08665.1| DNA gyrase, A subunit [Burkholderia pseudomallei 1655] Length = 866 Score = 384 bits (985), Expect = e-104, Method: Compositional matrix adjust. Identities = 229/621 (36%), Positives = 349/621 (56%), Gaps = 72/621 (11%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 SL + + YL YA+S I RA+PD+RDG KPVHRR++ AM E+ D+ +KKSARIV Sbjct: 11 TSLEEEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRPYKKSARIV 70 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGD +VYD++VR+AQ F RY L+ GQGNFG++DGD+AAA RYTE RM ++ Sbjct: 71 GDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAKI 130 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 +L +D++ VDF Y+ + +P++ PS+ PNLL NG+SGIAVGMAT+IP HN+ E+ Sbjct: 131 GHELLADIDKETVDFGPNYDGSEMQPLILPSRIPNLLINGSSGIAVGMATNIPPHNLNEV 190 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 +A L L++NP+ S+++L+E I PDFPT GII + + YR GRG +RA E Sbjct: 191 VDACLYLLNNPQASVDELIEIIPAPDFPTAGIIY-GVAGVRDGYRTGRGRVVMRAATHFE 249 Query: 260 EVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318 E+ RG I+V E+PYQV K L+E+IAEL+ K++ + DIRDES + V+ R Sbjct: 250 EIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKR 309 Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378 P++++ +++ + ++ F +NM L + P+++ L IL+ +L+HRREVL RR+ + Sbjct: 310 GEVPEVVLNNLYKATQLQDTFGMNMVAL-VDNQPKLLNLREILQCFLSHRREVLTRRTVY 368 Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV-----------------MVSR- 420 ++ R +L+GL +A NIDE IAII+ P P+ M+ R Sbjct: 369 ELRKARERGHVLEGLAVALANIDEFIAIIKAAPTP-PIAKQELMAKSWDSSLVRDMLMRA 427 Query: 421 -----------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451 + L++ Q IL +RL+ L LE+ +I E Sbjct: 428 ETENAAAGGRDAYRPEGLSPAFGMQGDGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEY 487 Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511 +++A+ + +L ++ I E+ +VK F G R + E++ + T Sbjct: 488 RDVMAQIADLLDILARPERITTLIGDELTQVKAEF------GDARRSKIELNATELNT-- 539 Query: 512 QAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRI 563 + +I + + V +S+ G++ R+ K A KE D ++ A+T D I Sbjct: 540 EDLITPQDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYI 599 Query: 564 LLLSTDG-----KAYTLPAGN 579 L S G K Y +P G+ Sbjct: 600 LCFSNRGRVYWVKVYEVPQGS 620 >gi|170693711|ref|ZP_02884869.1| DNA gyrase, A subunit [Burkholderia graminis C4D1M] gi|170141493|gb|EDT09663.1| DNA gyrase, A subunit [Burkholderia graminis C4D1M] Length = 868 Score = 384 bits (985), Expect = e-104, Method: Compositional matrix adjust. Identities = 228/611 (37%), Positives = 346/611 (56%), Gaps = 72/611 (11%) Query: 30 YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89 YL YA+S I RA+PD+RDG KPVHRR+++AM E+ D+ A+KKSARIVG+VIGK HPH Sbjct: 5 YLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNRAYKKSARIVGDVIGKYHPH 64 Query: 90 GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDE 149 GD +VYD++VR+AQ F RY L+ GQGNFG++DGD+AAA RYTE RM ++ +L +D+ Sbjct: 65 GDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAKIGHELLADIDK 124 Query: 150 DAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDN 209 + VDF Y+ ++EP + P++ PNLL NG+SGIAVGMAT+IP HN+ E+ +A L+ N Sbjct: 125 ETVDFTPNYDGSENEPAILPARIPNLLINGSSGIAVGMATNIPPHNLNEVVDACQHLLKN 184 Query: 210 PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS-WCI 268 PE +I++L+E + PDFPT GII + + YR GRG +RA EE+ RG I Sbjct: 185 PEATIDELIEIVPAPDFPTAGIIY-GVAGVRDGYRTGRGRVVMRALTHFEEIDRGQRMAI 243 Query: 269 VVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMES 328 +V E+PYQV K L+E+IAEL+ K++ + DIRDES + V+ R P++++ + Sbjct: 244 IVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKRGEVPEVVLNN 303 Query: 329 IFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVE 388 ++ + ++ F +NM L G+ P+++ L +L +L+HRREVL RR+ + ++ R Sbjct: 304 LYKATQLQDTFGMNMVALVDGQ-PKLLNLKEMLSCFLSHRREVLTRRTVYELRKARERGH 362 Query: 389 ILKGLLIAYLNIDEIIAIIRNEDKPKPV-----------------MVSR----------- 420 +L+GL +A NIDE IAII+ P P+ M+SR Sbjct: 363 VLEGLAVALANIDEFIAIIKAAPTP-PIAKQELMARPWDSSLVREMLSRAEQENASAGGR 421 Query: 421 -------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKI 461 + L++ Q IL +RL+ L LE+ +I E +++A+ + Sbjct: 422 EAYRPDGLNPSFGMQADGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEYRDVMAQIADL 481 Query: 462 DSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPIT 521 +L + +I I V E+ S ++ G R + E++ + T + +I + + Sbjct: 482 LDIL----ARPERITAII--VDELTSIKSEFGDARRSKIELNATELNT--EDLITPQEMV 533 Query: 522 VVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG--- 570 V +S+ G++ R+ K A KE D + A+T D IL S G Sbjct: 534 VTMSHAGYVKSQPLSEYRAQKRGGRGKQATSMKEDDWIDTLFIANTHDHILCFSNRGRVY 593 Query: 571 --KAYTLPAGN 579 K Y +P G+ Sbjct: 594 WVKVYEVPQGS 604 >gi|237747594|ref|ZP_04578074.1| DNA gyrase subunit A [Oxalobacter formigenes OXCC13] gi|229378956|gb|EEO29047.1| DNA gyrase subunit A [Oxalobacter formigenes OXCC13] Length = 877 Score = 384 bits (985), Expect = e-104, Method: Compositional matrix adjust. Identities = 230/611 (37%), Positives = 351/611 (57%), Gaps = 61/611 (9%) Query: 19 AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78 ++SL + + YL YA+S I RA+PD+RDG KPVHRR++ M EM + + K AR+ Sbjct: 10 SISLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFGMHEMNNAWNRPYVKCARV 69 Query: 79 VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138 VGEV+GK HPHGDQS+YD+LVR+AQ F RY L+ GQGNFG+IDGD+AAA RYTE R+ + Sbjct: 70 VGEVMGKYHPHGDQSIYDTLVRMAQDFSLRYTLVDGQGNFGSIDGDAAAAMRYTECRLDR 129 Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198 ++E +L +D++ +DF Y+ ++ EP V P++ PNLL NG+SGIAVGMAT+IP HN+ E Sbjct: 130 ISEEMLADIDKETIDFVPNYDGKEKEPSVLPTRIPNLLINGSSGIAVGMATNIPPHNLVE 189 Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258 + AL L+ P+ +I++L++ I PDFPTGGII + E YR GRG +RA+ Sbjct: 190 VINGALQLLHQPDCTIDELIDIIPAPDFPTGGIIY-GVSGVREGYRTGRGRVVMRAKTHF 248 Query: 259 EEVGR-GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317 EE GR G I+V E+PYQV K L+E+IAE + K++ + DIRDES + V+ Sbjct: 249 EEYGREGRQAIIVDELPYQVNKKNLLERIAESVREKKLDGISDIRDESDKSGMRVVIELK 308 Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377 R+ P++++ ++F + ++ F +NM L G+ P+++ L +L+ +LAHRREV+ RR+ Sbjct: 309 RNEVPEVVLNNLFKQTQLQDTFGMNMVALVDGQ-PKLLNLKQMLECFLAHRREVVTRRTI 367 Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR-------------- 420 F ++ R IL+GL +A NID+ IAIIR P + ++SR Sbjct: 368 FELRKARERGHILEGLAVALANIDDFIAIIRAAPTPPIARQELMSRSWNSSLVKSMLERT 427 Query: 421 ---------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453 + L+E Q IL +RL+ L LE+ +I +E + Sbjct: 428 GADHANSVDDFRPEGLPKMFGIQSDGLYKLSEEQATEILQMRLQRLTGLEQDKILNEYGD 487 Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREV-KEIFSKSTDLGRRRTTFCEVSRADKATLQQ 512 ++A+ ++ +L ++ I E+++V E K+ D+ R + E++ +D T + Sbjct: 488 VMAQIAELLDILAKPERVLAIIDDELKQVIGEYGEKAKDV---RRSEIELNASDLET--E 542 Query: 513 AMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRIL 564 +I + + V +S+ G+ R+ K A KE D + A+T D IL Sbjct: 543 DLITPQDMVVTLSHTGYFKSQPLSEYRAQKRGGRGRMATATKEDDWVDQLFIANTHDYIL 602 Query: 565 LLSTDGKAYTL 575 S G+ Y L Sbjct: 603 CFSDRGRMYWL 613 >gi|37514961|dbj|BAC98437.1| GyrA protein [Burkholderia glumae] Length = 869 Score = 384 bits (985), Expect = e-104, Method: Compositional matrix adjust. Identities = 231/621 (37%), Positives = 348/621 (56%), Gaps = 72/621 (11%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 +SL + YL YA+S I RA+PD+RDG KPVHRR++ AM E+ D+ A+KKSARIV Sbjct: 11 ISLEEEMRRLYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRAYKKSARIV 70 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGD++VYD++VR+AQ F RY L+ GQGNFG++DGD+AAA RYTE RM ++ Sbjct: 71 GDVIGKYHPHGDRAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAKI 130 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 +L +D++ VDF Y+ +SEP + P++ PNLL NG+SGIAVGMAT+IP HN+ E+ Sbjct: 131 GHELLADIDKETVDFGPNYDGSESEPTILPARIPNLLINGSSGIAVGMATNIPPHNLSEV 190 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 +A L+ NPE ++++L+E I PDFPT GII + + YR GRG +RA E Sbjct: 191 VDACHHLLANPEATVDELIEIIPAPDFPTAGIIY-GVAGVRDGYRTGRGRVVMRAATHFE 249 Query: 260 EVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318 E+ RG I+V E+PYQV K L+E+IAEL+ K++ + DIRDES + V+ R Sbjct: 250 EIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKR 309 Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378 P++++ +++ + ++ F +NM L G+ P+++ L +L +LAHRREVL RR+ + Sbjct: 310 GEVPEVVLNNLYKSTQLQDTFGMNMVALVDGQ-PKLLNLKEMLVCFLAHRREVLTRRTIY 368 Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV-----------------MVSR- 420 ++ R +L+GL +A NIDE I II+ P P+ M++R Sbjct: 369 ELRKARERGHVLEGLAVALANIDEFIEIIKAAPTP-PIARQALMAKSWDSSLVREMLTRA 427 Query: 421 -----------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451 ++L+E Q IL +RL+ L LE+ +I E Sbjct: 428 ETENAAAGGREAYRPEGLNAAFGMQADGQYNLSETQAQEILQMRLQRLTGLEQDKIIGEY 487 Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511 ++A+ + +L ++ I E+ VK F G R + E++ + T Sbjct: 488 REVMAQIADLLDILARPERITTIITEELTAVKAEF------GDARRSKIELNATELNT-- 539 Query: 512 QAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRI 563 + +I + + V +S+ G++ R+ K A KE D ++ A+T D I Sbjct: 540 EDLITPQDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYI 599 Query: 564 LLLSTDG-----KAYTLPAGN 579 L S G K Y +P G+ Sbjct: 600 LCFSNRGRVYWVKVYEVPQGS 620 >gi|254295615|ref|ZP_04963073.1| DNA gyrase, A subunit [Burkholderia pseudomallei 406e] gi|157805518|gb|EDO82688.1| DNA gyrase, A subunit [Burkholderia pseudomallei 406e] Length = 850 Score = 384 bits (985), Expect = e-104, Method: Compositional matrix adjust. Identities = 227/615 (36%), Positives = 348/615 (56%), Gaps = 72/615 (11%) Query: 26 LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85 + + YL YA+S I RA+PD+RDG KPVHRR++ AM E+ D+ +KKSARIVG+VIGK Sbjct: 1 MRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRPYKKSARIVGDVIGK 60 Query: 86 LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145 HPHGD +VYD++VR+AQ F RY L+ GQGNFG++DGD+AAA RYTE RM ++ +L Sbjct: 61 YHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAKIGHELLA 120 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 +D++ VDF Y+ + +P++ PS+ PNLL NG+SGIAVGMAT+IP HN+ E+ +A L Sbjct: 121 DIDKETVDFGPNYDGSEMQPLILPSRIPNLLINGSSGIAVGMATNIPPHNLNEVVDACLY 180 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265 L++NP+ S+++L+E I PDFPT GII + + YR GRG +RA EE+ RG Sbjct: 181 LLNNPQASVDELIEIIPAPDFPTAGIIY-GVAGVRDGYRTGRGRVVMRAATHFEEIDRGQ 239 Query: 266 -WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDL 324 I+V E+PYQV K L+E+IAEL+ K++ + DIRDES + V+ R P++ Sbjct: 240 RMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKRGEVPEV 299 Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384 ++ +++ + ++ F +NM L + P+++ L IL+ +L+HRREVL RR+ + ++ Sbjct: 300 VLNNLYKATQLQDTFGMNMVAL-VDNQPKLLNLREILQCFLSHRREVLTRRTVYELRKAR 358 Query: 385 RRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV-----------------MVSR------- 420 R +L+GL +A NIDE IAII+ P P+ M++R Sbjct: 359 ERGHVLEGLAVALANIDEFIAIIKAAPTP-PIAKQELMAKSWDSSLVRDMLTRAETENAA 417 Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457 + L++ Q IL +RL+ L LE+ +I E +++A+ Sbjct: 418 AGGRDAYRPEGLSPAFGMQGDGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEYRDVMAQ 477 Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517 + +L ++ I E+ +VK F G R + E++ + T + +I Sbjct: 478 IADLLDILARPERITTLIGDELTQVKAEF------GDARRSKIELNATELNT--EDLITP 529 Query: 518 EPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569 + + V +S+ G++ R+ K A KE D ++ A+T D IL S Sbjct: 530 QDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYILCFSNR 589 Query: 570 G-----KAYTLPAGN 579 G K Y +P G+ Sbjct: 590 GRVYWVKVYEVPQGS 604 >gi|83749097|ref|ZP_00946102.1| DNA gyrase subunit A [Ralstonia solanacearum UW551] gi|83724218|gb|EAP71391.1| DNA gyrase subunit A [Ralstonia solanacearum UW551] Length = 1016 Score = 384 bits (985), Expect = e-104, Method: Compositional matrix adjust. Identities = 256/738 (34%), Positives = 396/738 (53%), Gaps = 74/738 (10%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 VSL + YLAYA+S I RA+PD+RDG KPVHRR+++AM E+ D+ +KKSARIV Sbjct: 142 VSLEEEMRSSYLAYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNRPYKKSARIV 201 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGD +VYD++VR+AQ F RY L+ GQGNFG++DGD+AAA RYTE R++++ Sbjct: 202 GDVIGKYHPHGDSAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRLSKI 261 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A +L +D++ V+F Y+ ++EP + P++ PNLL NG+SGIAVGMAT+IP HN++E+ Sbjct: 262 AHELLADIDKETVNFEPNYDGSETEPSILPARIPNLLINGSSGIAVGMATNIPPHNLREV 321 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 + L L+ NP+ ++++L+E I PDFPT GII + E YR GRG +RA+ E Sbjct: 322 VDGCLHLLRNPDATVDELIELIPAPDFPTAGIIY-GISGVREGYRTGRGRVVMRAKTHFE 380 Query: 260 EVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318 ++ RG I+V E+PYQV K L+E+IAEL+ KR+ + DIRDES + V+ R Sbjct: 381 DIDRGQRQSIIVDELPYQVNKRTLLERIAELVTEKRVEGISDIRDESDKSGMRVVIELKR 440 Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378 P++++ +++ + ++ F +NM L G+ P+++ L +L+ +L HRREV+ RR+ F Sbjct: 441 GEVPEVVLNNLYKNTQLQDTFGMNMVALVDGQ-PRLLNLRQMLECFLLHRREVVTRRTVF 499 Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV-----------------MVSR- 420 ++ R IL+GL +A NIDE IAII+ P P+ M+SR Sbjct: 500 DLRKARERGHILEGLAVALANIDEFIAIIKAAPTP-PIAKQELMGRSWDSGLVRDMLSRA 558 Query: 421 ---------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453 + L++ Q IL +RL+ L LE+ +I E Sbjct: 559 ESDTVGGRTAYRPEGLLPVFGMQGDGLYKLSDTQAQEILQMRLQRLTGLEQDKIVQEYRE 618 Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513 ++A+ I LL+ + A + E+ I S + G R + E + + T + Sbjct: 619 VMAQ---IADLLDILARPERITAIIVEELTLIRS---EFGDERRSQIEHNATELDT--ED 670 Query: 514 MIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565 +I + + V +S+ G++ R+ K A KE D + A+T D IL Sbjct: 671 LITPQDLVVTLSHSGYMKSQPISEYRAQKRGGRGKQAAATKEDDWIDTLFVANTHDYILC 730 Query: 566 LSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQD---IVTAFVYDSTCKLLVVSSK 620 S G+ Y L + G G I + L+ + I+ +D + + +SK Sbjct: 731 FSNRGRLYWLKVWEVPQGSRNSRGRPIVNMFPLSPGEKINVILPVKQFDEQHFVFMATSK 790 Query: 621 GNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT-GDH-VAVVGENRKLLIFSIDQI 678 G +E +N RK E + +T G H V + + K + F + + Sbjct: 791 GTVKKTALTE-FSNPRKAGIIAVDLDEGDFLIGADITDGQHDVMLFSDAGKAVRFDENDV 849 Query: 679 PEMSR-GKGVRLQSYKDG 695 M R +GVR + ++G Sbjct: 850 RPMGRQARGVRGMNLEEG 867 >gi|34541069|ref|NP_905548.1| DNA gyrase subunit A [Porphyromonas gingivalis W83] gi|34397384|gb|AAQ66447.1| DNA gyrase, A subunit [Porphyromonas gingivalis W83] Length = 859 Score = 384 bits (985), Expect = e-104, Method: Compositional matrix adjust. Identities = 218/609 (35%), Positives = 360/609 (59%), Gaps = 28/609 (4%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 E+ + +S+ ++ Y+ Y++S I RA+PD+RDGFKPVHRR+++AM+E G + + Sbjct: 5 EDRIINISIEEEMKTAYIDYSMSVIVSRALPDVRDGFKPVHRRVLYAMNETGNVYTNPTR 64 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 K A VGEV+G HPHGD SVY +LVR+AQP+ RYPL+ GQGNFG++DGDS AA RYTE Sbjct: 65 KCANAVGEVLGHYHPHGDSSVYMALVRMAQPWSLRYPLVDGQGNFGSVDGDSPAAMRYTE 124 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 +R++++A +LQ +D++ VDF++ +++ EP V P++ PNLL NG SGIAVGMAT++P Sbjct: 125 SRLSRIAGEMLQDIDKETVDFQNNFDDTRQEPTVLPTRIPNLLINGASGIAVGMATNMPP 184 Query: 194 HNVQEICEAALALID-NPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252 HN+ E + +A I+ + +I +E L++Y+ PDFPTGG I + E++ GRG + Sbjct: 185 HNLSEAIDGCVAYIEADGDIDVEGLMQYVKAPDFPTGGFIY-GYSGVKEAFETGRGRVVI 243 Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRI 311 R+R +E+ I++TEIPY V K+ L+ IA+LI KR+ + +I DES + +RI Sbjct: 244 RSRAEIEQHNNHER-IIITEIPYLVNKAELVSNIAQLINEKRLDGISNISDESNRKGMRI 302 Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371 V+ K R + +++ ++ ++ +++ F +N L GR P+++ L ++ E++ HR+EV Sbjct: 303 VVEIK-RDANASVVLNKLYKMTALQSSFSVNNIALVKGR-PRLLNLKDLIGEFVDHRQEV 360 Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQV 428 + RR F ++ R IL+GLLIA NIDE+I+IIR+ M + RF L++ Q Sbjct: 361 VTRRCRFELRKARERAHILEGLLIAVDNIDEVISIIRSSKDAAEAMSRLIERFDLSDIQA 420 Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488 +I+++RLR+L LE ++++E + ++A +++LL + E+ E+KE + Sbjct: 421 RSIVDMRLRALTGLERDKLRAEFEEIMASINHLEALLADRALLMELVKSELLEIKEKYGD 480 Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDL 540 T E+ A + + + + + +S+ G+I R+ V Sbjct: 481 --------TRKSEIIYASEEFNPEDFYADDDMIITLSHMGYIKRTPLSEFRTQARGGVGA 532 Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNH 598 +E D ++ A I+L + G+ Y L + G G AIQ L++++ Sbjct: 533 KGSDTREEDFVEYIYSASMHATIMLFTAKGRCYWLKVYEIPEGAKNAKGRAIQNLLNIDP 592 Query: 599 NQDIVTAFV 607 + D V AF+ Sbjct: 593 D-DKVNAFI 600 >gi|21104368|dbj|BAB93454.1| DNA gyraseA [Porphyromonas gingivalis] Length = 859 Score = 384 bits (985), Expect = e-104, Method: Compositional matrix adjust. Identities = 218/609 (35%), Positives = 360/609 (59%), Gaps = 28/609 (4%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 E+ + +S+ ++ Y+ Y++S I RA+PD+RDGFKPVHRR+++AM+E G + + Sbjct: 5 EDRIINISIEEEMKTAYIDYSMSVIVSRALPDVRDGFKPVHRRVLYAMNETGNVYTNPTR 64 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 K A VGEV+G HPHGD SVY +LVR+AQP+ RYPL+ GQGNFG++DGDS AA RYTE Sbjct: 65 KCANAVGEVLGHYHPHGDSSVYMALVRMAQPWSLRYPLVDGQGNFGSVDGDSPAAMRYTE 124 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 +R++++A +LQ +D++ VDF++ +++ EP V P++ PNLL NG SGIAVGMAT++P Sbjct: 125 SRLSRIAGEMLQDIDKETVDFQNNFDDTRQEPTVLPTRIPNLLINGASGIAVGMATNMPP 184 Query: 194 HNVQEICEAALALID-NPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252 HN+ E + +A I+ + +I +E L++Y+ PDFPTGG I + E++ GRG + Sbjct: 185 HNLSEAIDGCVAYIEADGDIDVEGLMQYVKAPDFPTGGFIY-GYSGVKEAFETGRGRVVI 243 Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRI 311 R+R +E+ I++TEIPY V K+ L+ IA+LI KR+ + +I DES + +RI Sbjct: 244 RSRAEIEQHNNHER-IIITEIPYLVNKAELVSNIAQLINEKRLDGISNISDESNRKGMRI 302 Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371 V+ K R + +++ ++ ++ +++ F +N L GR P+++ L ++ E++ HR+EV Sbjct: 303 VVEIK-RDANASVVLNKLYKMTALQSSFSVNNIALVKGR-PRLLNLKDLIGEFVDHRQEV 360 Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQV 428 + RR F ++ R IL+GLLIA NIDE+I+IIR+ M + RF L++ Q Sbjct: 361 VTRRCRFELRKARERAHILEGLLIAVDNIDEVISIIRSSKDAAEAMSRLIERFDLSDIQA 420 Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488 +I+++RLR+L LE ++++E + ++A +++LL + E+ E+KE + Sbjct: 421 RSIVDMRLRALTGLERDKLRAEFEEIMASINHLEALLADRALLMELVKSELLEIKEKYGD 480 Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDL 540 T E+ A + + + + + +S+ G+I R+ V Sbjct: 481 --------TRKSEIIYASEEFNPEDFYADDDMIITLSHMGYIKRTPLSEFRTQARGGVGA 532 Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNH 598 +E D ++ A I+L + G+ Y L + G G AIQ L++++ Sbjct: 533 KGSDTREEDFVEYIYSASMHATIMLFTAKGRCYWLKVYEIPEGAKNAKGRAIQNLLNIDP 592 Query: 599 NQDIVTAFV 607 + D V AF+ Sbjct: 593 D-DKVNAFI 600 >gi|119512306|ref|ZP_01631392.1| DNA topoisomerase chain A [Nodularia spumigena CCY9414] gi|119463019|gb|EAW43970.1| DNA topoisomerase chain A [Nodularia spumigena CCY9414] Length = 836 Score = 384 bits (985), Expect = e-104, Method: Compositional matrix adjust. Identities = 244/708 (34%), Positives = 391/708 (55%), Gaps = 36/708 (5%) Query: 10 NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69 N L V +L ++ YL YA+S I RA+PD+RDG KPVHRRI++AM E+GL Sbjct: 6 NLLPTGQVITTALHTEMQRSYLEYAMSVIVGRALPDVRDGLKPVHRRILYAMHELGLTPD 65 Query: 70 AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129 ++K AR+VG+V+GK HPHGDQSVYD+LVRL Q F RYPL+SG GNFG++D D AA Sbjct: 66 RPYRKCARVVGDVLGKYHPHGDQSVYDALVRLVQEFSCRYPLLSGHGNFGSVDNDPPAAM 125 Query: 130 RYTEARMTQVA-ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188 RYTE R+ ++ E +L + ++ V+F ++ EP V P++ P LL NG SGIAVGMA Sbjct: 126 RYTETRLAPISYEGMLAEIADETVEFIGNFDNSQQEPTVLPAQLPFLLLNGCSGIAVGMA 185 Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248 T+IP HN+ E+ + +ALID P++S +KL E I GPDFPTGG IV I E+Y G+G Sbjct: 186 TNIPPHNLGELVDGLIALIDQPDLSDQKLWEIIPGPDFPTGGEIV-GDSGIREAYTSGKG 244 Query: 249 GFRVRARWCVEEVG--RGS---WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303 +R EE+ +GS I++TE+PYQV K+ IEK+A+L+ R+ + D+RD Sbjct: 245 SIVLRGVAKTEEIAPTKGSKRRTAIIITELPYQVNKAGWIEKVADLVNHGRLHGISDLRD 304 Query: 304 ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363 ES + V+ R +P +++ ++ + +++ F + L G+ P+ + L +L+E Sbjct: 305 ESDREGMRVVIELKRDTNPQEVLQHLYHQTALQSNFGAILLALVDGQ-PRQLSLRQMLQE 363 Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSR 420 +L R + L RR S+ + D R+ I+ GLL A +D++I I+R+ K + SR Sbjct: 364 FLKFREQTLNRRYSYELGKADSRLHIVSGLLKALSQLDQLIEILRSAADGTTAKMSLCSR 423 Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480 L+E+Q DAIL + LR L LE+ ++ E + L + + LL+ K+ + ++R Sbjct: 424 LDLSESQGDAILAMPLRRLTSLEQRNLQQEFEQLSEQIGSLQILLSDRKELLKTLKKDLR 483 Query: 481 EVKEIFS---KSTDLGRRRTTFCEVSRADKATLQQAMIEK------EPITVVI---SNRG 528 +K ++ ++ L R F +V +K + A I+ EP VI S+RG Sbjct: 484 SLKRKYNNPRRTKLLARSSEEFAKVKGVEKLQITAAAIDSPNSPDAEPPEEVILDFSHRG 543 Query: 529 WIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDR-ILLLSTDGKAYTLPAGNLLSGRGHG 587 ++R L+ A + I TD+ +L++++ GK Y + G++ G Sbjct: 544 YVRRLQPSGKKSKAENGLPDHDFIIQSDLTATDKELLVITSSGKVYPVNVGDIRPTTGRS 603 Query: 588 EAIQLLIDL------NHNQDIVTAFVYD---STCKLLVVSSKGNAFIVEESEIIANTRKG 638 LI + + +V+ + T ++++++ +G + E+ TR+G Sbjct: 604 PRGTPLITMLSSTAQGAQEAVVSRLILPENLETRQMVLLTKEGRIKRLTLGELTNLTRRG 663 Query: 639 KTFLKVSSEEKMKLVVKVT-GDHVAVVGENRKLLIFSID--QIPEMSR 683 T LK+ ++++ T +++ + +LL F+ D Q+P M R Sbjct: 664 ITILKLKEDDELLFTQLTTPKENLILASSGGRLLKFAADDQQLPVMGR 711 >gi|269958963|ref|YP_003328752.1| DNA gyrase subunit A [Anaplasma centrale str. Israel] gi|269848794|gb|ACZ49438.1| DNA gyrase subunit A [Anaplasma centrale str. Israel] Length = 902 Score = 384 bits (985), Expect = e-104, Method: Compositional matrix adjust. Identities = 229/602 (38%), Positives = 342/602 (56%), Gaps = 59/602 (9%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 V VS+ LE YL+YA+S I RAIPD+RDG KPVHRRI+++M + G D +KK+A Sbjct: 5 VLPVSIEQELESSYLSYAMSVIVSRAIPDIRDGLKPVHRRILYSMYKSGYDHNKPYKKAA 64 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+V+G+ HPH D ++YD+LVR+AQ F PLI QGNFG+IDGD A+ RYTEAR+ Sbjct: 65 RVVGDVMGRYHPHADTAIYDALVRMAQDFSLLVPLIDSQGNFGSIDGDPPASMRYTEARL 124 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 ++ A +L +DED VDFR Y+E + EPV+ P++FPNLL NG G+AVGM+T+IPSHN+ Sbjct: 125 SEAAHFLLNDIDEDTVDFRPNYDENEEEPVILPAEFPNLLVNGAGGVAVGMSTNIPSHNL 184 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ +A +A I+ PEI++++L+ I GPDFPTGG+I+ I ++ GRG VR R Sbjct: 185 GEVVDACVAYIERPEITLDELMAIIPGPDFPTGGVIM-GDAGIRSAFASGRGTIVVRGRT 243 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316 EE+ G I++ EIPYQV K++L+E+I EL+ K+I + D+RDES + V Sbjct: 244 HTEELPSGRQAIIIDEIPYQVNKAKLVERIHELVKEKKIEGVADLRDESNKSGVRVAIEL 303 Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376 R +D +++ + L+ + T F +N VL + P+VM L I+ ++ R+EV+ RR+ Sbjct: 304 KRQVDSQVVLNQLLGLTPLRTSFSINTLVLENNK-PRVMSLPEIIATFVDFRKEVIVRRT 362 Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN--------------------------- 409 FR++ I + + G+ IA LNIDE+++II++ Sbjct: 363 RFRLKKIREKAHLYIGMYIAVLNIDEVVSIIKSSKDSAEASAALRERRWAPSADIRNMIE 422 Query: 410 --EDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLA---EKEKI--- 461 D V + LT QV AIL +RL+ L LE+ ++++EL++++A E KI Sbjct: 423 LVSDSTGVVEGGMYQLTVPQVKAILEMRLQRLTGLEKEKLEAELESMVALITEYTKILST 482 Query: 462 DSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPIT 521 DSLL +Q + L + R T E S D+ +++I KE + Sbjct: 483 DSLLMDIVKQG------------LLDAKAKLAKPRNTAIEQS-VDEID-AESLIPKEEMV 528 Query: 522 VVISNRGWIRSLKSHSVDLS--------ALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573 V ++ G+++ +K + A KE D T +L S GK Y Sbjct: 529 VTVTMNGFVKRVKLSNYRAQKRGGKGRVAQGIKEEDVTTKLFVVDTHTSVLFFSNVGKVY 588 Query: 574 TL 575 L Sbjct: 589 KL 590 >gi|162329639|ref|YP_469621.2| DNA gyrase subunit A [Rhizobium etli CFN 42] Length = 941 Score = 384 bits (985), Expect = e-104, Method: Compositional matrix adjust. Identities = 241/712 (33%), Positives = 379/712 (53%), Gaps = 63/712 (8%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 ++ +S+ ++ YL YA+S I RA+PD+RDG KPVHRRI++ MSE+G+D+ + K A Sbjct: 16 IEPISIMEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYGMSELGIDWNKKYVKCA 75 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+ G+V+GK HPHG+ ++YD+L R+AQP+ R PLI GQGNFG++DGD AA RYTE R+ Sbjct: 76 RVTGDVMGKYHPHGNAAIYDALARMAQPWSLRLPLIDGQGNFGSVDGDPPAAERYTECRL 135 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 + A +L +D++ VDFRD Y+ SEPVV P+KFPNLL NG GIAVGMAT+IP HN+ Sbjct: 136 EKAAHSLLDDLDKETVDFRDNYDGTLSEPVVVPAKFPNLLVNGAGGIAVGMATNIPPHNL 195 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ + +ALI++P I + +L++ I GPDFPTG I+ R I +Y GRG +R Sbjct: 196 SEVIDGCIALINDPAIELPELMQIIPGPDFPTGAKIL-GRAGIRSAYETGRGSVIMRGVA 254 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316 +E + I++TEIPYQV K+ +IEK+AEL+ KRI + D+RDES V+ Sbjct: 255 TIEPMRGDREQIIITEIPYQVNKATMIEKMAELVREKRIEGISDLRDESDRQGYRVVIEL 314 Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376 R + ++++ ++ + ++T F NM L+ G+ Q+ LD +L+ +++ R EV+ RR+ Sbjct: 315 KRDANAEVILNQLYRYTPLQTSFGCNMVALNGGKPEQLTLLD-MLRAFVSFREEVVSRRT 373 Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP----VMVSR------------ 420 F ++ R +L GL IA NIDE+I +IR P+ +M R Sbjct: 374 KFLLRKARERAHVLVGLAIAVANIDEVIRVIRQAPDPQSAREELMTRRWPAEDVESLIRL 433 Query: 421 -------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467 ++L+E Q AIL LRL L L +I EL+ + E +L+S Sbjct: 434 IDDPRHRINDDLTYNLSEEQARAILELRLARLTALGRDEIGDELNKIGEEIRDYLDILSS 493 Query: 468 GKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNR 527 + + E+ V++ F RRT E+ + +I +E + V +S+ Sbjct: 494 RVRIQTIVKDELSAVRDEFGTP-----RRT---EIVDGGLEMDDEDLIAREDMVVTVSHL 545 Query: 528 GWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYT 574 G+I R+ + S + ++ D + +T +L S+ G K + Sbjct: 546 GYIKRVPLTTYRAQRRGGKGRSGMTTRDEDFVSRLFVVNTHTPVLFFSSRGIVYKEKVWR 605 Query: 575 LPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD------STCKLLVVSSKGNAFIVEE 628 LP G S G+A+ ++ L + I T ++ +++G + Sbjct: 606 LPIGTPTS---RGKALINMLPLEPGERITTILPLPEDEASWDNLDVMFSTTRGTVRRNKL 662 Query: 629 SEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH--VAVVGENRKLLIFSIDQI 678 S+ + R GK +K+ E L V+ D V + + + FS+D + Sbjct: 663 SDFVQVNRNGKIAMKLEEEGDEILSVETCTDRDDVLLTTALGQCIRFSVDDV 714 >gi|167816867|ref|ZP_02448547.1| DNA gyrase subunit A [Burkholderia pseudomallei 91] Length = 866 Score = 383 bits (984), Expect = e-104, Method: Compositional matrix adjust. Identities = 228/621 (36%), Positives = 350/621 (56%), Gaps = 72/621 (11%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 SL + + YL YA+S I RA+PD+RDG KPVHRR++ AM E+ D+ +KKSARIV Sbjct: 11 TSLEEEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRPYKKSARIV 70 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGD +VYD++VR+AQ F RY L+ GQGNFG++DGD+AAA RYTE RM ++ Sbjct: 71 GDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAKI 130 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 +L +D++ VDF Y+ + +P++ PS+ PNLL NG+SGIAVGMAT+IP HN+ E+ Sbjct: 131 GHELLADIDKETVDFGPNYDGSEMQPLILPSRIPNLLINGSSGIAVGMATNIPPHNLNEV 190 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 +A L L++NP+ S+++L+E I PDFPT GII + + YR GRG +RA E Sbjct: 191 VDACLYLLNNPQASVDELIEIIPAPDFPTAGIIY-GVAGVRDGYRTGRGRVVMRAATHFE 249 Query: 260 EVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318 E+ RG I+V E+PYQV K L+E+IAEL+ K++ + DIRDES + V+ R Sbjct: 250 EIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKR 309 Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378 P++++ +++ + ++ F +NM L + P+++ L IL+ +L+HRREVL RR+ + Sbjct: 310 GEVPEVVLNNLYKATQLQDTFGMNMVAL-VDNQPKLLNLREILQCFLSHRREVLTRRTVY 368 Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV-----------------MVSR- 420 ++ R +L+GL +A NID+ IAII+ P P+ M++R Sbjct: 369 ELRKARERGHVLEGLAVALANIDKFIAIIKAAPTP-PIAKQELMAKSWDSSLVRDMLTRA 427 Query: 421 -----------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451 + L++ Q IL +RL+ L LE+ +I E Sbjct: 428 ETENAAAGGRDAYRPEGLSPAFGMQGDGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEY 487 Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511 +++A+ + +L ++ I E+ +VK F G R + E++ + T Sbjct: 488 RDVMAQIADLLDILARPERITTLIGDELTQVKAEF------GDARRSKIELNATELNT-- 539 Query: 512 QAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRI 563 + +I + + V +S+ G++ R+ K A KE D ++ A+T D I Sbjct: 540 EDLITPQDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYI 599 Query: 564 LLLSTDG-----KAYTLPAGN 579 L S G K Y +P G+ Sbjct: 600 LCFSNRGRVYWVKVYEVPQGS 620 >gi|332284745|ref|YP_004416656.1| DNA gyrase subunit A [Pusillimonas sp. T7-7] gi|330428698|gb|AEC20032.1| DNA gyrase subunit A [Pusillimonas sp. T7-7] Length = 864 Score = 383 bits (984), Expect = e-104, Method: Compositional matrix adjust. Identities = 231/601 (38%), Positives = 336/601 (55%), Gaps = 62/601 (10%) Query: 30 YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89 YL YA+S I RA+PD+RDG KPVHRR++ AM E+ D+ A+KKSARIVG+VIGK HPH Sbjct: 5 YLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRAYKKSARIVGDVIGKYHPH 64 Query: 90 GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDE 149 GD +VYD++VR+AQ F RY L+ GQGNFG++DGDSAAA RYTE R+ ++A +L +D+ Sbjct: 65 GDSAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRLAKIAHELLADIDQ 124 Query: 150 DAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDN 209 + VDF Y+ + EP++ PS+ PNLL NG+SGIAVGMAT+IP HN+ E+ E L + N Sbjct: 125 ETVDFGPNYDGSEQEPLLLPSRLPNLLVNGSSGIAVGMATNIPPHNLAEVIEGCLYCLRN 184 Query: 210 PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS-WCI 268 P+ SIE+L+E I PDFPTGGII + E YR GRG +RA+ E++ +G+ I Sbjct: 185 PDCSIEELIELIPAPDFPTGGIIY-GMSGVREGYRTGRGRVIMRAKTHFEDMEKGNRQAI 243 Query: 269 VVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMES 328 +V +PYQV K L EKIA+L+ KRI + DIRDES +D ++ R P++++ + Sbjct: 244 IVDALPYQVNKKTLQEKIADLVNDKRIEGISDIRDESDKDGMRLVIELKRGEVPEVILNN 303 Query: 329 IFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVE 388 ++ + ++ F +NM L G+ P+++ L I++ +L HRREV+ RR+ F+++ R Sbjct: 304 LYKNTQLQDTFGMNMVALVDGQ-PRLLNLKQIVEYFLFHRREVVTRRTVFQLRKARERGH 362 Query: 389 ILKGLLIAYLNIDEIIAIIRNEDKPKPV-----------------MVSR----------- 420 +L+GL +A NID+ I II+ P PV M+ R Sbjct: 363 VLEGLAVALANIDDFITIIKAAPTP-PVARQELMARSWDSSLVREMLVRADDGVTPGGRA 421 Query: 421 ------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKID 462 + L+E Q ILN+RL+ L LE+ +I E +++ + Sbjct: 422 AYRPEGLPQVFGLQDDGLYRLSEVQAQEILNMRLQRLTGLEQDKIVGEYKDIMTTIADLL 481 Query: 463 SLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITV 522 +L ++ I+ E+ +K FS S RR + D L M + V Sbjct: 482 DILARPERITAIISDELLAIKAEFSTSAKDTRRSEIEHNATELDTEDLITPM----DMVV 537 Query: 523 VISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT 574 +S G+I R+ K A KE D + A+T D +L S G+ Y Sbjct: 538 TLSQTGYIKSQPLSEYRAQKRGGRGKQATAMKENDWVDQLFIANTHDYLLCFSDRGRVYW 597 Query: 575 L 575 L Sbjct: 598 L 598 >gi|319745152|gb|EFV97475.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus agalactiae ATCC 13813] Length = 819 Score = 383 bits (984), Expect = e-104, Method: Compositional matrix adjust. Identities = 236/698 (33%), Positives = 398/698 (57%), Gaps = 28/698 (4%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 N++ +SL + ER+ Y+ I+ERA+PD+RDG KPV RRI+++M++ G F F+KS Sbjct: 3 NIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGFRKS 62 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 A+ VG V+G HPHGD S+YD++VR++Q + R LI GN G++DGD AAA RYTEAR Sbjct: 63 AKSVGNVMGNFHPHGDSSIYDAMVRMSQDWKNRETLIEMHGNNGSMDGDPAAAMRYTEAR 122 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 ++++A +LQ +D++ V F +++ + EP V P+ FPNLL NG +GI+ G AT IP HN Sbjct: 123 LSEIAGYLLQDIDKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPHN 182 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 + E+ +A + +ID+P+ ++KL+E++ GPDFPTG II + ++ I ++Y G+G VR+R Sbjct: 183 LAEVIDAVVYMIDHPKAKLDKLMEFLPGPDFPTGAII-QGKDEIRKAYETGKGRVAVRSR 241 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315 +E + G I+VTEIPY+V KS L+++I ++ + ++P + ++RDES D + Sbjct: 242 TAIETLKGGKKQIIVTEIPYEVNKSVLVKRIDDVRVNNKVPGIAEVRDESDRDGLRIAIE 301 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 + D +++ +F +D++ + NM + P+ + L IL ++AHRRE++ R Sbjct: 302 LKKEADETIVLNYLFKYTDLQVNYNFNMVAID-DYTPKQVGLSRILTSYIAHRREIIIAR 360 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432 S F + ++R+ I++GL+ +DE+IA+IR N+ K + + +E Q +AI+ Sbjct: 361 SKFDKEKAEKRLHIVEGLIRVLSILDEVIALIRASENKADAKENLKVSYEFSEAQAEAIV 420 Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492 L+L L + ++ E + L + + ++++ + +N + E+REVK+ F+ + Sbjct: 421 TLQLYRLTNTDIVTLREEEEELRQQITMLKAIISDERTMYNVMKRELREVKKKFANT--- 477 Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI-----RSLKSHSVDLSALHFKE 547 RR+ E++ + +IE E V ++ G++ RS + +VD L +E Sbjct: 478 --RRSELQELAETIEIDTASLIIE-EDTYVSVTRGGYVKRTSPRSFNASTVD--ELGKRE 532 Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIVT 604 D L +A TT +L+ + G P L R GE + Q L++ N++I+ Sbjct: 533 DDELIFVSNAKTTQHLLMFTNLGNLAYRPVHELADIRWKDVGEHLSQNLVNFASNEEIIY 592 Query: 605 AFVYDSTCK--LLVVSSKGNAFIVEESEIIA-NTRKGKT--FLKVSS-EEKMKLVVKVTG 658 A + D K V+S G E EI T K KT + K+ S E+ + V + Sbjct: 593 AELVDDFTKETYFAVTSLGQIKRFERQEISPWRTYKSKTAKYAKLKSVEDYVVTVAPIQL 652 Query: 659 DHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDG 695 + V +V N L FSI+ +P + S+ GV+ + KD Sbjct: 653 EDVILVTYNGYALRFSINDVPVVGSKAAGVKAMNLKDS 690 >gi|300692121|ref|YP_003753116.1| DNA gyrase, subunit A, type II topoisomerase [Ralstonia solanacearum PSI07] gi|299079181|emb|CBJ51849.1| DNA gyrase, subunit A, type II topoisomerase [Ralstonia solanacearum PSI07] Length = 885 Score = 383 bits (984), Expect = e-104, Method: Compositional matrix adjust. Identities = 255/738 (34%), Positives = 395/738 (53%), Gaps = 74/738 (10%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 VSL + YLAYA+S I RA+PD+RDG KPVHRR+++AM E+ D+ +KKSARIV Sbjct: 11 VSLEEEMRSSYLAYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNRPYKKSARIV 70 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGD +VYD++VR+AQ F RY L+ GQGNFG++DGD+AAA RYTE R++++ Sbjct: 71 GDVIGKYHPHGDSAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRLSKI 130 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A +L +D++ V+F Y+ ++EP + P++ PNLL NG+SGIAVGMAT+IP HN++E+ Sbjct: 131 AHELLADIDKETVNFEPNYDGSETEPSILPARIPNLLINGSSGIAVGMATNIPPHNLREV 190 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 + L L+ NP+ ++++L+E I PDFPT GII + E YR GRG +RA+ E Sbjct: 191 VDGCLHLLRNPDATVDELIELIPAPDFPTAGIIY-GISGVREGYRTGRGRVVMRAKTHFE 249 Query: 260 EVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318 ++ RG I+V E+PYQV K L+E+IAEL+ KR+ + DIRDES + V+ R Sbjct: 250 DIDRGQRQAIIVDELPYQVNKRTLLERIAELVTEKRVEGISDIRDESDKSGMRVVIELKR 309 Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378 P++++ +++ + ++ F +NM L G+ P+++ L +L+ +L HRREV+ RR+ F Sbjct: 310 GEVPEVVLNNLYKNTQLQDTFGMNMVALVDGQ-PRLLNLRQMLECFLLHRREVVTRRTVF 368 Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV-----------------MVSR- 420 ++ R IL+GL +A NIDE IAII+ P P+ M+SR Sbjct: 369 DLRKARERGHILEGLAVALANIDEFIAIIKAAPTP-PIAKQELMGRSWDSGLVREMLSRA 427 Query: 421 ---------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453 + L++ Q IL +RL+ L LE+ +I E Sbjct: 428 ESDTAGGRAAYRPEGLLPVFGMQDDGLYKLSDTQAQEILQMRLQRLTGLEQDKIVQEYRE 487 Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513 ++ E+I LL+ + A + E+ I + G R + E + + T + Sbjct: 488 VM---EQIADLLDILARPERITAIIVEELTLI---RAEFGDERRSQIEHNATELDT--ED 539 Query: 514 MIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565 +I + + V +S+ G++ R+ K A KE D + A+T D IL Sbjct: 540 LITPQDLVVTLSHSGYMKSQPISEYRAQKRGGRGKQAAATKEDDWIDTLFVANTHDYILC 599 Query: 566 LSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQD---IVTAFVYDSTCKLLVVSSK 620 S G+ Y L + G G I + L+ + I+ +D + + +SK Sbjct: 600 FSNRGRLYWLKVWEVPQGSRNSRGRPIVNMFPLSPGEKINVILPVKQFDEQHFVFMATSK 659 Query: 621 GNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT-GDH-VAVVGENRKLLIFSIDQI 678 G +E +N RK E + +T G H V + + K + F + + Sbjct: 660 GTVKKTALTE-FSNPRKAGIIAVDLDEGDFLIGADITDGQHDVMLFSDAGKAVRFDENDV 718 Query: 679 PEMSR-GKGVRLQSYKDG 695 M R +GVR + ++G Sbjct: 719 RPMGRQARGVRGMNLEEG 736 >gi|190891755|ref|YP_001978297.1| DNA gyrase, A subunit [Rhizobium etli CIAT 652] gi|190697034|gb|ACE91119.1| DNA gyrase protein, A subunit [Rhizobium etli CIAT 652] Length = 919 Score = 383 bits (984), Expect = e-104, Method: Compositional matrix adjust. Identities = 240/703 (34%), Positives = 375/703 (53%), Gaps = 63/703 (8%) Query: 26 LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85 ++ YL YA+S I RA+PD+RDG KPVHRRI++ MSE+G+D+ + K AR+ G+V+GK Sbjct: 4 MQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYGMSELGIDWNKKYVKCARVTGDVMGK 63 Query: 86 LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145 HPHG+ ++YD+L R+AQP+ R PLI GQGNFG++DGD AA RYTE R+ + A +L Sbjct: 64 YHPHGNAAIYDALARMAQPWSLRLPLIDGQGNFGSVDGDPPAAERYTECRLEKAAHSLLD 123 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 +D++ VDFRD Y+ SEPVV P+KFPNLL NG GIAVGMAT+IP HN+ E+ + +A Sbjct: 124 DLDKETVDFRDNYDGTLSEPVVVPAKFPNLLVNGAGGIAVGMATNIPPHNLSEVIDGCIA 183 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265 LI++P I + +L++ I GPDFPTG I+ R I +Y GRG +R +E + Sbjct: 184 LINDPAIELPELMQIIPGPDFPTGAKIL-GRAGIRSAYETGRGSVIMRGVAAIEPMRGDR 242 Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325 I++TEIPYQV K+ +IEK+AEL+ KRI + D+RDES V+ R + +++ Sbjct: 243 EQIIITEIPYQVNKATMIEKMAELVREKRIEGISDLRDESDRQGYRVVIELKRDANAEVI 302 Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385 + ++ + ++T F NM L+ G+ Q+ LD +L+ +++ R EV+ RR+ F ++ Sbjct: 303 LNQLYRYTPLQTSFGCNMVALNGGKPEQLTLLD-MLRAFVSFREEVVSRRTKFLLRKARE 361 Query: 386 RVEILKGLLIAYLNIDEIIAIIRNEDKPKP----VMVSR--------------------- 420 R +L GL IA NIDE+I +IR P+ +M R Sbjct: 362 RAHVLVGLAIAVANIDEVIRVIRQAPDPQSAREELMTRRWPAEDVESLIRLIDDPRHRIN 421 Query: 421 ----FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476 ++L+E Q AIL LRL L L +I EL+ + E +L+S + + Sbjct: 422 EDMTYNLSEEQARAILELRLARLTALGRDEIGDELNKIGEEIRDYLDILSSRVRIQTIVK 481 Query: 477 CEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI------ 530 E+ V++ F RRT E+ + +I +E + V +S+ G+I Sbjct: 482 DELTAVRDEFGTP-----RRT---EIVDGGLEMDDEDLIAREDMVVTVSHLGYIKRVPLT 533 Query: 531 --RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSG 583 R+ + S + ++ D + +T +L S+ G K + LP G S Sbjct: 534 TYRAQRRGGKGRSGMTTRDEDFVSRLFVVNTHTPVLFFSSRGIVYKEKVWRLPIGTPTS- 592 Query: 584 RGHGEAIQLLIDLNHNQDIVTAFVYD------STCKLLVVSSKGNAFIVEESEIIANTRK 637 G+A+ ++ L + I T ++ +++G + S+ + R Sbjct: 593 --RGKALINMLPLAPGERITTILPLPEDEESWDNLDVMFSTTRGTVRRNKLSDFVQVNRN 650 Query: 638 GKTFLKVSSEEKMKLVVKVTGDH--VAVVGENRKLLIFSIDQI 678 GK +K+ E L V+ +H V + + + FS+D + Sbjct: 651 GKIAMKLEEEGDEILSVETCTEHDDVLLTTALGQCIRFSVDDV 693 >gi|161525434|ref|YP_001580446.1| DNA gyrase subunit A [Burkholderia multivorans ATCC 17616] gi|189349829|ref|YP_001945457.1| DNA gyrase subunit A [Burkholderia multivorans ATCC 17616] gi|160342863|gb|ABX15949.1| DNA gyrase, A subunit [Burkholderia multivorans ATCC 17616] gi|189333851|dbj|BAG42921.1| DNA gyrase subunit A [Burkholderia multivorans ATCC 17616] Length = 867 Score = 383 bits (984), Expect = e-104, Method: Compositional matrix adjust. Identities = 228/621 (36%), Positives = 349/621 (56%), Gaps = 72/621 (11%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 SL + YL YA+S I RA+PD+RDG KPVHRR++ AM E+ D+ A+KKSARIV Sbjct: 11 TSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRAYKKSARIV 70 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGD +VY+++VR+AQ F RY L+ GQGNFG+IDGD+AAA RYTE RM ++ Sbjct: 71 GDVIGKYHPHGDSAVYETIVRMAQDFSLRYMLVDGQGNFGSIDGDNAAAMRYTEIRMAKI 130 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 +L +D++ VDF Y+ + +P++ P++ PNLL NG+SGIAVGMAT+IP HN+ E+ Sbjct: 131 GHELLADIDKETVDFGPNYDGSEMQPLILPARIPNLLINGSSGIAVGMATNIPPHNLNEV 190 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 +A L++NP+ +I++L+E I PDFPT GII + + YR GRG +RA E Sbjct: 191 VDACQHLLNNPDATIDELIEIIPAPDFPTAGIIY-GVAGVRDGYRTGRGRVVMRAATHFE 249 Query: 260 EVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318 E+ RG I+V E+PYQV K L+E+IAEL+ K++ + DIRDES + V+ R Sbjct: 250 EIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKR 309 Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378 P++++ +++ + ++ F +NM L G+ P+++ L IL+ +L+HRREVL RR+ + Sbjct: 310 GEVPEVVLNNLYKATQLQDTFGMNMVALVDGQ-PKLLNLKEILQCFLSHRREVLTRRTVY 368 Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV-----------------MVSR- 420 ++ R +L+GL +A NIDE IAII+ P P+ M++R Sbjct: 369 ELRKARERGHVLEGLAVALANIDEFIAIIKAAPTP-PIAKQELMAKAWDSSLVREMLTRA 427 Query: 421 -----------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451 + L++ Q IL +RL+ L LE+ +I E Sbjct: 428 EAENAAAGGRAAYRPEGLNPAFGMQGDGLYKLSDTQAQEILQMRLQRLTGLEQDKIIGEY 487 Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511 +++A+ + +L ++ I E+ VK F G R + E++ + T Sbjct: 488 RDVMAQISDLLDILARPERITTMIGEELTTVKAEF------GDARRSKIELNATELNT-- 539 Query: 512 QAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRI 563 + +I + + V +S+ G++ R+ K A KE D ++ A+T D + Sbjct: 540 EDLITPQDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYM 599 Query: 564 LLLSTDG-----KAYTLPAGN 579 L S G K Y +P G+ Sbjct: 600 LCFSNRGRVYWIKVYEVPQGS 620 >gi|222148750|ref|YP_002549707.1| DNA gyrase subunit A [Agrobacterium vitis S4] gi|221735736|gb|ACM36699.1| DNA gyrase A subunit [Agrobacterium vitis S4] Length = 930 Score = 383 bits (984), Expect = e-104, Method: Compositional matrix adjust. Identities = 243/713 (34%), Positives = 379/713 (53%), Gaps = 63/713 (8%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 +++ +S+ ++ YL YA+S I RA+PD+RDG KPVHRRI+ MSE+G+D+ + K Sbjct: 14 DIEPISIITEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILFGMSELGIDWNKKYVKC 73 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 AR+ G+V+GK HPHG+ ++YD+L R+AQ + R PLI GQGNFG+IDGD AA RYTE R Sbjct: 74 ARVTGDVMGKFHPHGNSAIYDALARMAQDWSLRLPLIDGQGNFGSIDGDPPAAERYTECR 133 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 + + A +L +D+D VDFRD Y+ SEPVV P+KFPNLL NG GIAVGMAT+IP HN Sbjct: 134 LQKAAHSLLDDLDKDTVDFRDNYDGTLSEPVVVPAKFPNLLVNGAGGIAVGMATNIPPHN 193 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 + E+ +ALI+NP I + +L++ I GPDFPTG +I+ R I +Y GRG +R Sbjct: 194 LVEVINGCIALIENPAIDLPELMQIIPGPDFPTGALIL-GRSGIRSAYETGRGSVIMRGV 252 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315 +E + I++TEIPYQV KS +IEK+AEL+ KRI + D+RDES V+ Sbjct: 253 ARIEPMRGDREQIIITEIPYQVNKSTMIEKMAELVRDKRIEGISDLRDESDRQGYRVVVE 312 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 R + D+++ ++ + +++ F NM L+ G+ Q+ LD +L+ +++ R EV+ RR Sbjct: 313 LKRDANADVILNQLYRYTPLQSSFGCNMVALNGGKPEQLTLLD-MLRAFVSFREEVISRR 371 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP----VMVSR----------- 420 + + ++ R +L GL IA NIDE+I +IR P+ +M R Sbjct: 372 TKYLLRKARDRAHVLVGLAIAVANIDEVIRLIRQAPDPQTAREQLMERRWPAADVESLIR 431 Query: 421 --------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466 ++L+E Q AIL LRL L L +I EL+ + AE +L+ Sbjct: 432 LIDDPRHRINEDNTYNLSEEQARAILELRLARLTALGRDEIDEELNKIGAEISDYLDILS 491 Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526 S + + E+ V++ F RR+ E + +I +E + V +S+ Sbjct: 492 SRTRIQTIVVDELVAVRDEFGTP-----RRSQIME---GGPDMDDEDLIAREDMVVTVSH 543 Query: 527 RGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAY 573 G+I R+ + S + ++ D + A+T +L S+ G K + Sbjct: 544 LGYIKRVPLVTYRAQRRGGKGRSGMATRDEDFVTRLFVANTHTPVLFFSSRGIVYKEKVW 603 Query: 574 TLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD------STCKLLVVSSKGNAFIVE 627 LP G S G+A+ ++ L + I T ++ +++G + Sbjct: 604 RLPIGTPQS---RGKALINMLPLEPGERITTIMPLPEDEASWDNLDVMFSTTRGTVRRNK 660 Query: 628 ESEIIANTRKGKTFLKVSSEEKMKLVVKVT--GDHVAVVGENRKLLIFSIDQI 678 S+ + R GK +K+ E L V+ D V + + + F +D++ Sbjct: 661 LSDFVQVNRNGKIAMKLEEEGDEILSVETCTIDDDVLLTTALGQAIRFPVDEV 713 >gi|116628689|ref|YP_813861.1| DNA gyrase, A subunit [Lactobacillus gasseri ATCC 33323] gi|238853344|ref|ZP_04643724.1| DNA gyrase, A subunit [Lactobacillus gasseri 202-4] gi|116094271|gb|ABJ59423.1| DNA gyrase subunit A [Lactobacillus gasseri ATCC 33323] gi|238834032|gb|EEQ26289.1| DNA gyrase, A subunit [Lactobacillus gasseri 202-4] Length = 829 Score = 383 bits (984), Expect = e-104, Method: Compositional matrix adjust. Identities = 238/720 (33%), Positives = 387/720 (53%), Gaps = 53/720 (7%) Query: 6 ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65 ++N N + ++ V L + +L YA+S I RA+PD+RDG KPV RRI++ M E+G Sbjct: 1 MANENQPQDHRIRNVDLTHTMRSSFLDYAMSVIVARALPDVRDGLKPVQRRILYGMHELG 60 Query: 66 LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125 + +KKSARIVGEV+GK HPHGD S+Y ++ +AQ F RY L+ G GNFG++DGD Sbjct: 61 VTPDKQYKKSARIVGEVMGKFHPHGDSSIYLAMAHMAQDFSYRYMLVDGHGNFGSVDGDE 120 Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185 AA RYTEA+M+++A +L+ ++++ +D++ Y++ ++EPVV P++ PNLL NG SGIAV Sbjct: 121 PAAMRYTEAKMSKIAVEMLRDINKETIDWQRNYDDTENEPVVLPARIPNLLVNGASGIAV 180 Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245 GM T+IP HN+ E+ L+DNP+++ + L++ I GPDFPTGGI++ R I +Y Sbjct: 181 GMTTNIPPHNLAEVISGIHMLMDNPDVTTKDLMKVIPGPDFPTGGIVM-GRGGIYRAYET 239 Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305 G+G VRA+ +E G IVV+E+PY V K+ L++KIA+L K I + +RDES Sbjct: 240 GKGNIVVRAKTNIETEKNGRERIVVSELPYLVNKAELVKKIADLAREKIIDGITGVRDES 299 Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365 + + R +++ ++F + M+ F +NM + G P + L +L+ +L Sbjct: 300 DQTGMRITIDIRRDASASVVLNNLFKETQMQANFGMNMVAIVNG-APHFLTLKQMLEYYL 358 Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFS 422 H+ +V+ RR+ F ++ + R IL GL IA +IDEII IIR N D K ++ F Sbjct: 359 HHQEDVITRRTKFELKKAEARAHILAGLRIALDHIDEIIKIIRGSQNSDIAKAQLIQNFG 418 Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482 L + Q AIL++RL L LE +I++E +L A+ +L ++ I E+ ++ Sbjct: 419 LDDRQSQAILDMRLVRLTGLERDKIEAEYQDLQAKIADYKDILAKPERIDEIIYNELLDI 478 Query: 483 KEIFSKSTDLGRRRTTFCE---VSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539 ++ F RRT E VS D + +IE++ + + +++ G+I+ + + Sbjct: 479 QKRFGDD-----RRTKIAEGEAVSIED-----EDLIEQKDVLLTLTHNGYIKRMPADEFK 528 Query: 540 --------LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LP 576 + + ++ D + + + T D +L + GK Y+ LP Sbjct: 529 VQNRGGRGIKGMGVQDDDFINHLIFSSTHDFLLFFTNLGKVYSKKAYEIPEFGRNAKGLP 588 Query: 577 AGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR 636 NLL GE IQ +I++ D L V+ G + SE R Sbjct: 589 IVNLLE-LDKGEKIQAVINVPEGAD---------DNYLFFVTKMGTVKRTKVSEFQNIRR 638 Query: 637 KGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSR-GKGVRLQSYKD 694 G L + +++ V+ G ++G + + F+ + + M R GVR + +D Sbjct: 639 SGLIALTLRDGDELNNVLTTDGKQNILIGTHLGYAVTFNENDVRSMGRTAAGVRGINLRD 698 Score = 38.9 bits (89), Expect = 3.0, Method: Compositional matrix adjust. Identities = 44/161 (27%), Positives = 68/161 (42%), Gaps = 6/161 (3%) Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHN 599 L AL ++GD L L IL+ + G A T ++ S G A I+L N Sbjct: 641 LIALTLRDGDELNNVLTTDGKQNILIGTHLGYAVTFNENDVRS-MGRTAAGVRGINLRDN 699 Query: 600 QDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKV 656 +V + + + ++LV+S KG SE R GK + EK + V V Sbjct: 700 DYVVGSDILEPDSEVLVISEKGYGKRTAASEYPVKGRGGKGIKTANITEKNGPLAGVTVV 759 Query: 657 TGDH-VAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDG 695 GD + ++ ++ F +D + + R GVRL DG Sbjct: 760 NGDEDIMLITSAGVMIRFDVDDVSQTGRATLGVRLIKVDDG 800 >gi|268318567|ref|YP_003292223.1| DNA gyrase, subunit A [Lactobacillus johnsonii FI9785] gi|262396942|emb|CAX65956.1| DNA gyrase, subunit A [Lactobacillus johnsonii FI9785] Length = 829 Score = 383 bits (984), Expect = e-104, Method: Compositional matrix adjust. Identities = 221/625 (35%), Positives = 352/625 (56%), Gaps = 42/625 (6%) Query: 6 ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65 ++N N + ++ V L + +L YA+S I RA+PD+RDG KPV RRI++ M E+G Sbjct: 1 MANENQPQDHRIRNVDLTHTMRTSFLDYAMSVIVARALPDVRDGLKPVQRRILYGMHELG 60 Query: 66 LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125 + +KKSARIVGEV+GK HPHGD S+Y ++ +AQ F RY L+ G GNFG++DGD Sbjct: 61 VTPDKQYKKSARIVGEVMGKFHPHGDSSIYLAMAHMAQDFSYRYMLVDGHGNFGSVDGDE 120 Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185 AA RYTEA+M+++A +L+ ++++ +D++ Y++ ++EPVV P++ PNLL NG SGIAV Sbjct: 121 PAAMRYTEAKMSKIAVEMLRDINKETIDWQRNYDDTENEPVVLPARIPNLLVNGASGIAV 180 Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245 GM T+IP HN+ E+ L+DNP+++ + L++ I GPDFPTGGI++ R I +Y Sbjct: 181 GMTTNIPPHNLAEVIRGIHMLMDNPDVTTKDLIKVIPGPDFPTGGIVM-GRGGIYRAYET 239 Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305 G+G VRA+ +E G IVVTE+PY V K+ L++KIA+L K I + +RDES Sbjct: 240 GKGNIVVRAKTEIETEKNGRERIVVTELPYLVNKAELVKKIADLAREKTIDGITGVRDES 299 Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365 + + R +++ ++F + M+ F +NM + G P + L +L+ +L Sbjct: 300 DQTGMRITIDIRRDASASVVLNNLFKETQMQANFGMNMVAIVNG-APHFLTLKQMLEYYL 358 Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFS 422 H+ +V+ RR+ F ++ + R IL GL IA +IDEII IIR N D K ++ F Sbjct: 359 HHQEDVITRRTKFELKKAEARAHILAGLRIALDHIDEIIKIIRGSQNSDIAKAQLIQNFG 418 Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482 L + Q AIL++RL L LE +I++E L A+ +L ++ I E+ ++ Sbjct: 419 LDDRQSQAILDMRLVRLTGLERDKIEAEYQELQAKIADYKDILAKPERIDEIIYNELLDI 478 Query: 483 KEIFSKSTDLGRRRTTFCE---VSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539 ++ F RRT E VS D + +IE++ + + +++ G+I+ + + Sbjct: 479 QKRFGDD-----RRTKIAEGEAVSIED-----EDLIEQKDVLLTLTHNGYIKRMPADEFK 528 Query: 540 --------LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LP 576 + + ++ D + + + T D +L + GK Y+ LP Sbjct: 529 VQNRGGRGIKGMGVQDDDFINHLIFSSTHDFLLFFTNLGKVYSKKAYEIPEFGRNAKGLP 588 Query: 577 AGNLLSGRGHGEAIQLLIDLNHNQD 601 NLL GE IQ +I++ D Sbjct: 589 IVNLLE-LDKGEKIQAVINVPEGAD 612 Score = 38.1 bits (87), Expect = 5.0, Method: Compositional matrix adjust. Identities = 44/161 (27%), Positives = 68/161 (42%), Gaps = 6/161 (3%) Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHN 599 L AL ++GD L L IL+ + G A T ++ S G A I+L N Sbjct: 641 LIALTLRDGDELNNVLTTDGKQNILIGTHLGYAVTFNEKDVRS-MGRTAAGVRGINLRDN 699 Query: 600 QDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKV 656 +V + + + ++LV+S KG SE R GK + EK + V V Sbjct: 700 DYVVGSDILEPDSEVLVISEKGYGKRTAASEYPVKGRGGKGIKTANITEKNGPLAGVTVV 759 Query: 657 TGDH-VAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDG 695 GD + ++ ++ F +D + + R GVRL DG Sbjct: 760 NGDEDIMLITSAGVMIRFDVDDVSQTGRATLGVRLIKVDDG 800 >gi|188994739|ref|YP_001928991.1| DNA gyrase A subunit [Porphyromonas gingivalis ATCC 33277] gi|188594419|dbj|BAG33394.1| DNA gyrase A subunit [Porphyromonas gingivalis ATCC 33277] Length = 859 Score = 383 bits (984), Expect = e-104, Method: Compositional matrix adjust. Identities = 218/609 (35%), Positives = 360/609 (59%), Gaps = 28/609 (4%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 E+ + +S+ ++ Y+ Y++S I RA+PD+RDGFKPVHRR+++AM+E G + + Sbjct: 5 EDRIINISIEEEMKTAYIDYSMSVIVSRALPDVRDGFKPVHRRVLYAMNETGNVYTNPTR 64 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 K A VGEV+G HPHGD SVY +LVR+AQP+ RYPL+ GQGNFG++DGDS AA RYTE Sbjct: 65 KCANAVGEVLGHYHPHGDSSVYMALVRMAQPWSLRYPLVDGQGNFGSVDGDSPAAMRYTE 124 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 +R++++A +LQ +D++ VDF++ +++ EP V P++ PNLL NG SGIAVGMAT++P Sbjct: 125 SRLSRIAGEMLQDIDKETVDFQNNFDDTRQEPTVLPTRIPNLLINGASGIAVGMATNMPP 184 Query: 194 HNVQEICEAALALID-NPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252 HN+ E + +A I+ + +I +E L++Y+ PDFPTGG I + E++ GRG + Sbjct: 185 HNLSEAIDGCVAYIEADGDIDVEGLMQYVKAPDFPTGGFIY-GYSGVKEAFETGRGRVVI 243 Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRI 311 R+R +E+ I++TEIPY V K+ L+ IA+LI KR+ + +I DES + +RI Sbjct: 244 RSRAEIEQHNNHER-IIITEIPYLVNKAELVSNIAQLINEKRLDGISNISDESNRKGMRI 302 Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371 V+ K R + +++ ++ ++ +++ F +N L GR P+++ L ++ E++ HR+EV Sbjct: 303 VVEIK-RDANASVVLNKLYKMTALQSSFSVNNIALVKGR-PRLLNLKDLIGEFVDHRQEV 360 Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQV 428 + RR F ++ R IL+GLLIA NIDE+I+IIR+ M + RF L++ Q Sbjct: 361 VTRRCRFELRKARERAHILEGLLIAVDNIDEVISIIRSSKDAAEAMSRLIERFDLSDIQA 420 Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488 +I+++RLR+L LE ++++E + ++A +++LL + E+ E+KE + Sbjct: 421 RSIVDMRLRALTGLERDKLRAEFEEIMASINHLEALLADRALLMELVKSELLEIKEKYGD 480 Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDL 540 T E+ A + + + + + +S+ G+I R+ V Sbjct: 481 --------TRKSEIIYASEEFNPEDFYADDDMIITLSHMGYIKRTPLSEFRTQARGGVGA 532 Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNH 598 +E D ++ A I+L + G+ Y L + G G AIQ L++++ Sbjct: 533 KGSDTREEDFVEYIYSASMHATIMLFTAKGRCYWLKVYEIPEGAKNAKGRAIQNLLNIDP 592 Query: 599 NQDIVTAFV 607 + D V AF+ Sbjct: 593 D-DKVNAFI 600 >gi|77408983|ref|ZP_00785704.1| DNA topoisomerase IV, A subunit [Streptococcus agalactiae COH1] gi|77172406|gb|EAO75554.1| DNA topoisomerase IV, A subunit [Streptococcus agalactiae COH1] Length = 819 Score = 383 bits (984), Expect = e-104, Method: Compositional matrix adjust. Identities = 234/698 (33%), Positives = 400/698 (57%), Gaps = 28/698 (4%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 N++ +SL + ER+ Y+ I+ERA+PD+RDG KPV RRI+++M++ G F F+KS Sbjct: 3 NIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGFRKS 62 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 A+ VG V+G HPHGD S+YD++VR++Q + R LI GN G++DGD AAA RYTEAR Sbjct: 63 AKSVGNVMGNFHPHGDSSIYDAMVRMSQDWKNRETLIEMHGNNGSMDGDPAAAMRYTEAR 122 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 ++++A+ +LQ +D++ V F +++ + EP V P+ FPNLL NG +GI+ G AT IP HN Sbjct: 123 LSEIADYLLQDIDKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPHN 182 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 + E+ +A + +ID+P+ ++KL+E++ GPDFPTG II + ++ I ++Y G+G VR+R Sbjct: 183 LAEVIDAVVYMIDHPKAKLDKLMEFLPGPDFPTGAII-QGKDEIRKAYETGKGRVAVRSR 241 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315 +E + G I+VTEIPY+V KS L+++I ++ + ++P + ++RDES D + Sbjct: 242 TAIETLKGGKKQIIVTEIPYEVNKSVLVKRIDDVRVNNKVPGIAEVRDESDRDGLRIAIE 301 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 + D +++ +F +D++ + NM + P+ + L IL ++AHRRE++ R Sbjct: 302 LKKEADETIVLNYLFKYTDLQVNYNFNMVAID-DYTPKQVGLSRILTSYIAHRREIIIAR 360 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432 S F + ++R+ I++GL+ +DE+IA+IR N+ K + + +E Q +AI+ Sbjct: 361 SKFDKEKAEKRLHIVEGLIRVLSILDEVIALIRASENKADAKENLKVSYEFSEAQAEAIV 420 Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492 L+L L + ++ E + L + + ++++ + +N + E+REVK+ F+ + Sbjct: 421 TLQLYRLTNTDIVTLREEEEELRQQITMLKAIISDERTMYNVMKRELREVKKKFANT--- 477 Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI-----RSLKSHSVDLSALHFKE 547 RR+ E++ + +IE E V ++ G++ RS + +VD L +E Sbjct: 478 --RRSELQELAETIEIDTASLIIE-EDTYVSVTRGGYVKRTSPRSFNASTVD--ELGKRE 532 Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIVT 604 D L +A TT +L+ + G P L R GE + Q L++ N++I+ Sbjct: 533 DDELIFVSNAKTTQHLLMFTNLGNLAYRPVHELADIRWKDVGEHLSQNLVNFASNEEIIY 592 Query: 605 AFVYDSTCK--LLVVSSKGNAFIVEESEIIA-NTRKGKT--FLKVSS-EEKMKLVVKVTG 658 A + D K V+S G E EI T K KT + K+ + ++ + V + Sbjct: 593 AELVDDFTKETYFAVTSLGQIKRFERQEISPWRTYKSKTAKYAKLKNVDDYVVTVAPIQL 652 Query: 659 DHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDG 695 + V +V N +L FSI+ +P + S+ GV+ + KD Sbjct: 653 EDVILVTYNGYVLRFSINDVPVVGSKAAGVKAMNLKDS 690 >gi|117927217|ref|YP_871768.1| DNA gyrase subunit A [Acidothermus cellulolyticus 11B] gi|117647680|gb|ABK51782.1| DNA gyrase subunit A [Acidothermus cellulolyticus 11B] Length = 834 Score = 383 bits (984), Expect = e-104, Method: Compositional matrix adjust. Identities = 231/640 (36%), Positives = 362/640 (56%), Gaps = 35/640 (5%) Query: 6 ISNSNTLVEEN--VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63 ++ TL E ++ V L+ ++ YL YA+S I RA+PD+RDG KPVHRR+++AM + Sbjct: 1 MTQDTTLPPEGGRIEPVDLQVEMQRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMYD 60 Query: 64 MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123 G + K AR+VG+VIG HPHGD +VYD+LVRLAQP+V R+PL+ GQGNFG+ Sbjct: 61 GGYRPDRGYVKCARVVGDVIGSYHPHGDAAVYDTLVRLAQPWVMRHPLVDGQGNFGSPGN 120 Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183 D AAA RYTE R+T +A +L+ + ++ VDF Y+ EPV+ P++FPNLL NG++GI Sbjct: 121 DPAAAMRYTECRLTPLAMEMLRDIGKETVDFVPNYDGRQMEPVILPARFPNLLVNGSAGI 180 Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEK----LLEYIIGPDFPTGGIIVESRESI 239 AVGMAT+IP HN++E+ A +++P+ + E+ LLE I GPDFPTGG+IV I Sbjct: 181 AVGMATNIPPHNLREVAAGAQWALEHPDATREELLAALLERIKGPDFPTGGVIV-GHAGI 239 Query: 240 VESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299 E+YR GRG +RA VEE RG +VVT++PYQV L +IAEL+ RIP + Sbjct: 240 EEAYRTGRGSIVMRAVVEVEEDARGRQSLVVTQLPYQVNPDNLAVRIAELVSEGRIPGIA 299 Query: 300 DIRDESAEDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPL 357 DIRD+S+ R+V+ K ++ P +++ +++ + ++ F NM L + VP+ + L Sbjct: 300 DIRDDSSSRTGQRLVISLKRDAV-PKVVLANLYKHTQLQDTFGANMVAL-VDNVPRTLSL 357 Query: 358 DGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPK 414 D ++ W+AH+ +V+ RR+ + ++ +RR IL+GL+ A +D +IA+IR + D+ + Sbjct: 358 DAFIRHWVAHQIDVIVRRTRYDLREAERRAHILRGLVKALDQLDAVIALIRGSASADEAR 417 Query: 415 PVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQ 474 ++ + E Q AIL+++LR L LE I +D+L + +I L + + Q Sbjct: 418 SGLMELLDVDEVQATAILDMQLRKLAALERQAI---IDDLAKHEAEIADLNDILANESRQ 474 Query: 475 IACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW----- 529 A E+KEI K D RRT AD + +I +E + V I+ G+ Sbjct: 475 RAIVSEELKEIVDKYGD--ERRTAIVP---ADGDVSIEDLIAEEDVVVTITRGGYAKRTK 529 Query: 530 ---IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGR 584 RS + + ++ D ++ T +L + G+ Y L A + + Sbjct: 530 TSLYRSQRRGGKGIQGAQLRQDDVVEHFFVTTTHHWLLFFTDKGRVYRLKAYEIPEAARS 589 Query: 585 GHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKG 621 G+ + L+ ++ I YD+ L++ + G Sbjct: 590 ARGQHVANLLAFQPDEKIAQVLALRDYDAAPYLVLATRSG 629 >gi|221201254|ref|ZP_03574294.1| DNA gyrase, A subunit [Burkholderia multivorans CGD2M] gi|221206292|ref|ZP_03579305.1| DNA gyrase, A subunit [Burkholderia multivorans CGD2] gi|221173601|gb|EEE06035.1| DNA gyrase, A subunit [Burkholderia multivorans CGD2] gi|221179104|gb|EEE11511.1| DNA gyrase, A subunit [Burkholderia multivorans CGD2M] Length = 867 Score = 383 bits (984), Expect = e-104, Method: Compositional matrix adjust. Identities = 227/621 (36%), Positives = 349/621 (56%), Gaps = 72/621 (11%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 SL + YL YA+S I RA+PD+RDG KPVHRR++ AM E+ D+ A+KKSARIV Sbjct: 11 TSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRAYKKSARIV 70 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGD +VY+++VR+AQ F RY L+ GQGNFG+IDGD+AAA RYTE RM ++ Sbjct: 71 GDVIGKYHPHGDSAVYETIVRMAQDFSLRYMLVDGQGNFGSIDGDNAAAMRYTEIRMAKI 130 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 +L +D++ VDF Y+ + +P++ P++ PNLL NG+SGIAVGMAT++P HN+ E+ Sbjct: 131 GHELLADIDKETVDFGPNYDGSEMQPLILPARIPNLLINGSSGIAVGMATNVPPHNLNEV 190 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 +A L++NP+ +I++L+E I PDFPT GII + + YR GRG +RA E Sbjct: 191 VDACQHLLNNPDATIDELIEIIPAPDFPTAGIIY-GVAGVRDGYRTGRGRVVMRAATHFE 249 Query: 260 EVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318 E+ RG I+V E+PYQV K L+E+IAEL+ K++ + DIRDES + V+ R Sbjct: 250 EIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKR 309 Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378 P++++ +++ + ++ F +NM L G+ P+++ L IL+ +L+HRREVL RR+ + Sbjct: 310 GEVPEVVLNNLYKATQLQDTFGMNMVALVDGQ-PKLLNLKEILQCFLSHRREVLTRRTVY 368 Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV-----------------MVSR- 420 ++ R +L+GL +A NIDE IAII+ P P+ M++R Sbjct: 369 ELRKARERGHVLEGLAVALANIDEFIAIIKAAPTP-PIAKQELMAKAWDSSLVREMLTRA 427 Query: 421 -----------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451 + L++ Q IL +RL+ L LE+ +I E Sbjct: 428 EAENAAAGGRAAYRPEGLNPAFGMQGDGLYKLSDTQAQEILQMRLQRLTGLEQDKIIGEY 487 Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511 +++A+ + +L ++ I E+ VK F G R + E++ + T Sbjct: 488 RDVMAQISDLLDILARPERITTMIGEELTTVKAEF------GDARRSKIELNATELNT-- 539 Query: 512 QAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRI 563 + +I + + V +S+ G++ R+ K A KE D ++ A+T D + Sbjct: 540 EDLITPQDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYM 599 Query: 564 LLLSTDG-----KAYTLPAGN 579 L S G K Y +P G+ Sbjct: 600 LCFSNRGRVYWIKVYEVPQGS 620 >gi|311897313|dbj|BAJ29721.1| putative DNA gyrase subunit A [Kitasatospora setae KM-6054] Length = 867 Score = 383 bits (984), Expect = e-104, Method: Compositional matrix adjust. Identities = 220/574 (38%), Positives = 336/574 (58%), Gaps = 29/574 (5%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 V+ + L ++ YL YA+S I RA+P++RDG KPVHRR+++AM + G + K A Sbjct: 26 VELIELETEMQRSYLDYAMSVIVSRALPEVRDGLKPVHRRVLYAMYDGGYRPEKGYYKCA 85 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+V+G HPHGD S+YD+LVRLAQP+ R PL+ G GNFG+ D AAA RYTE +M Sbjct: 86 RVVGDVMGNYHPHGDTSIYDTLVRLAQPWSMRMPLVDGNGNFGSPGNDPAAAMRYTECKM 145 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 +A +++ +DE+ VDF Y+ EP V PS+ PNLL NG +GIAVGMAT+IP HN+ Sbjct: 146 MPLAMEMMRDIDEETVDFAANYDGRQQEPTVLPSRIPNLLVNGATGIAVGMATNIPPHNL 205 Query: 197 QEICEAALALIDNPEISIEKLLEYII----GPDFPTGGIIVESRESIVESYRLGRGGFRV 252 +E+ AL +++P S E+LLE ++ GPDFPTG +IV R I ++YR GRG + Sbjct: 206 REVASGALWALEHPGASNEELLEALVERIKGPDFPTGALIV-GRRGIEDAYRTGRGSITM 264 Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV--R 310 RA VEE+ +G C+V+TE+P+QV L KIA+L+ RI + D+RDES+ R Sbjct: 265 RAVVEVEEI-QGRQCLVITELPFQVNPDNLALKIADLVKDGRIAGIADVRDESSSRTGQR 323 Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370 +V+ K R +++ +++ +D++T F NM L G VP+ + LD ++ W+AH+ E Sbjct: 324 LVIVLK-RDAVAKVVLNNLYKHTDLQTNFGANMLALVDG-VPRTLSLDAFIRHWVAHQIE 381 Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQ 427 V+ RR++FR++ + R IL+ LL A ID +IA+IR + D + ++ + E Q Sbjct: 382 VIVRRTTFRLRKAEERAHILRALLKALDQIDAVIALIRASESADAARTGLMRLLDIDELQ 441 Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487 +AIL ++LR L LE +I SE D L A+ + +++L S +Q ++ E+ + E + Sbjct: 442 ANAILEMQLRRLAALESARILSEHDELQAKINEYNAILASPARQREIVSEELTAIVEKYG 501 Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVD 539 RR+T +D + +I +E I V I+ G++ RS K Sbjct: 502 DE-----RRSTLIP---SDGDLSIEDLIAEEDIVVTITRGGYVKRTRSDLYRSQKRGGKG 553 Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573 + K+ D + T + IL + G+ Y Sbjct: 554 VRGAQLKQDDIVDHFFVTTTHNWILFFTNKGRVY 587 >gi|241895512|ref|ZP_04782808.1| DNA gyrase subunit A [Weissella paramesenteroides ATCC 33313] gi|241871258|gb|EER75009.1| DNA gyrase subunit A [Weissella paramesenteroides ATCC 33313] Length = 858 Score = 383 bits (984), Expect = e-104, Method: Compositional matrix adjust. Identities = 230/634 (36%), Positives = 368/634 (58%), Gaps = 36/634 (5%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 +K+ L + +L YA+S I RA+PD+RDG KPVHRRI++ M+E+G+ KKSA Sbjct: 11 IKSAKLGEQMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKQHKKSA 70 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 RIVG+V+GK HPHGD ++Y+S+VR+AQ F RY L+ G GNFG++DGD AAA RYTEAR+ Sbjct: 71 RIVGDVMGKYHPHGDSAIYESMVRMAQDFSYRYMLVDGHGNFGSVDGDPAAAMRYTEARL 130 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 +++A +L+ +++D +DF++ Y+ D EPVV P++FPNLL NG +GIAVGMAT+IP HN+ Sbjct: 131 SKIATEMLRDINKDTIDFQENYDGTDREPVVLPARFPNLLVNGANGIAVGMATNIPPHNL 190 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ L+ NP+++ +L+E I GPDFPTG I++ + I ++Y G+G VRA+ Sbjct: 191 GEVISGLHMLMKNPDVTTAELMEAIPGPDFPTGAIVM-GKSGIRKAYETGKGVVTVRAKT 249 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316 +E G I+VTE+PY V K++LIE+IAEL KRI + + DES ++ + Sbjct: 250 EIETEKSGKEHIIVTELPYMVNKAKLIERIAELGRDKRIEGITGVNDESDQEGNRIAIEI 309 Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376 R + +++ +++ + M+T F NM + GR P+++ L +L +L H+++V+ RR+ Sbjct: 310 RRDVSASVVLNNLYKNTLMQTGFSFNMLAVQDGR-PKLLSLKDMLVAYLDHQQKVVRRRT 368 Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAILN 433 F ++ R IL+GL IA +ID II IIR+ + K ++ ++L++ Q AIL+ Sbjct: 369 EFELRKAQARAHILEGLRIALDHIDAIINIIRHSETSEIAKQKLMVDYALSDKQSQAILD 428 Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493 +RL L LE +I+ E LL +L ++ I E+ EV+ SK D Sbjct: 429 MRLVRLTGLERDKIEKEYQGLLTAIADFQDILAKPERIDEIIYTELLEVQ---SKYGDER 485 Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI-RSLKSH-------SVDLSALHF 545 R +V+ + + +IE+E I V +++ G+I R L+S + + Sbjct: 486 RTELQIGDVT----SIEDEDLIEEEDIIVSLTHAGYIKRMLQSEFRAQNRGGRGIQGMGV 541 Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTL---------------PAGNLLSGRGHGEAI 590 + D + + T D +L + GK Y + P NLL G GE+I Sbjct: 542 NDDDFIDELIGTSTHDTLLFFTNSGKVYKMKGYEVPEYGRTAKGIPVVNLL-GIESGESI 600 Query: 591 QLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAF 624 Q +I++ + + +++ +T + +V + N F Sbjct: 601 QTVINVRGDASESSDYLFFTTRQGVVKRTPVNEF 634 >gi|22537311|ref|NP_688162.1| DNA topoisomerase IV subunit A [Streptococcus agalactiae 2603V/R] gi|22534181|gb|AAN00035.1|AE014244_12 DNA topoisomerase IV, A subunit [Streptococcus agalactiae 2603V/R] Length = 819 Score = 383 bits (984), Expect = e-104, Method: Compositional matrix adjust. Identities = 236/697 (33%), Positives = 398/697 (57%), Gaps = 28/697 (4%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 N++ +SL + ER+ Y+ I+ERA+PD+RDG KPV RRI+++M++ G F F+KS Sbjct: 3 NIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGFRKS 62 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 A+ VG V+G HPHGD S+YD++VR++Q + R LI GN G++DGD AAA RYTEAR Sbjct: 63 AKSVGNVMGNFHPHGDSSIYDAMVRMSQDWKNRETLIEMHGNNGSMDGDPAAAMRYTEAR 122 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 ++++A +LQ +D++ V F +++ + EP V P+ FPNLL NG +GI+ G AT IP HN Sbjct: 123 LSEIAGYLLQDIDKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPHN 182 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 + E+ +A + +ID+P+ ++KL+E++ GPDFPTG II + ++ I ++Y G+G VR+R Sbjct: 183 LAEVIDAVVYMIDHPKAKLDKLMEFLPGPDFPTGAII-QGKDEIRKAYETGKGRVAVRSR 241 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315 +E + G I+VTEIPY+V KS L+++I ++ + ++P + ++RDES D + Sbjct: 242 TAIETLKGGKKQIIVTEIPYEVNKSVLVKRIDDVRVNNKVPGIAEVRDESDRDGLRIAIE 301 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 + D +++ +F +D++ + NM + P+ + L IL ++AHRRE++ R Sbjct: 302 LKKEADETIVLNYLFKYTDLQVNYNFNMVAID-DYTPKQVGLSRILTSYIAHRREIIIAR 360 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432 S F + ++R+ I++GL+ +DE+IA+IR N+ K + + +E Q +AI+ Sbjct: 361 SKFDKEKAEKRLHIVEGLIRVLSILDEVIALIRASENKADAKENLKVSYEFSEAQAEAIV 420 Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492 L+L L + ++ E + L + + ++++ + +N + E+REVK+ F+ + Sbjct: 421 TLQLYRLTNTDIVTLREEEEELRQQITMLKAIISDERTMYNVMKRELREVKKKFANT--- 477 Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI-----RSLKSHSVDLSALHFKE 547 RR+ E++ + +IE E V ++ G++ RS + +VD L +E Sbjct: 478 --RRSELQELAETIEIDTASLIIE-EDTYVSVTRGGYVKRTSPRSFNASTVD--ELGKRE 532 Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIVT 604 D L +A TT +L+ + G P L R GE + Q L++ N++I+ Sbjct: 533 DDELIFVSNAKTTQHLLMFTNLGNLAYRPVHELADIRWKDVGEHLSQNLVNFASNEEIIY 592 Query: 605 AFVYDSTCK--LLVVSSKGNAFIVEESEIIA-NTRKGKT--FLKVSS-EEKMKLVVKVTG 658 A + D K V+S G E EI T K KT + K+ S E+ + V + Sbjct: 593 AELVDDFTKETYFAVTSLGQIKRFERQEISPWRTYKSKTAKYAKLKSVEDYVVTVAPIQL 652 Query: 659 DHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKD 694 + V +V N L FSI+ +P + S+ GV+ + KD Sbjct: 653 EDVILVTYNGYALRFSINDVPVVGSKAAGVKAMNLKD 689 >gi|270296695|ref|ZP_06202894.1| DNA gyrase, A subunit [Bacteroides sp. D20] gi|270272682|gb|EFA18545.1| DNA gyrase, A subunit [Bacteroides sp. D20] Length = 842 Score = 383 bits (984), Expect = e-104, Method: Compositional matrix adjust. Identities = 254/777 (32%), Positives = 417/777 (53%), Gaps = 57/777 (7%) Query: 12 LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71 L ++ + +++ ++ Y+ Y++S I RA+PD+RDGFKPVHRRI+ M +G Sbjct: 2 LEQDRIIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILFGMMGLGNTSDKP 61 Query: 72 FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131 +KKSAR+VGEV+GK HPHGD SVY +LVR+AQP+ RY L+ GQGN+G++DGDSAAA RY Sbjct: 62 YKKSARVVGEVLGKYHPHGDLSVYGALVRMAQPWAMRYMLVDGQGNYGSVDGDSAAAMRY 121 Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191 TE R+ ++ E ++ ++++ VD ++ +++ EP V P++ PNLL NG SGIAVGMAT++ Sbjct: 122 TECRLRKIGEDMMTDLEKETVDMQNNFDDSLQEPTVMPARIPNLLVNGASGIAVGMATNM 181 Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251 P+HN+ E+ +A +A I+N +I IE+L+ Y+ PDFPTGG I + E+Y GRG Sbjct: 182 PTHNLSEVIDACIAYIENNDIDIEELMTYVKAPDFPTGGYIY-GMSGVREAYLTGRGRVI 240 Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVR 310 +RAR + E G IVVTEIPY V K+ LI+ IA+L K+I + + DES E +R Sbjct: 241 MRARAEI-ETGSTHDKIVVTEIPYGVNKAELIKNIADLANEKKIEGIANANDESDREGMR 299 Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370 IV+ K R + +++ ++ ++ ++T F +N L GR P+++ L ++K ++ HR + Sbjct: 300 IVIDVK-RDANASIVLNKLYKMTMLQTSFGVNNVALVHGR-PRLLNLKDLIKHFVEHRHD 357 Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQ 427 V+ RR+ + ++ R IL+GL+IA NIDE+I IIR P ++ RF L+E Q Sbjct: 358 VVIRRTQYDLRKAKERAHILEGLIIASDNIDEVIKIIRAAKTPNDAISGLMERFQLSEIQ 417 Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487 AI+ +RLR L L + Q+ +E + + + ++ +L + + I E+ EVKE + Sbjct: 418 SRAIVEMRLRQLTGLMQDQLHAEYEEIQKQIAYLEEILVNDELCRKVIKDELIEVKEKYG 477 Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVD 539 RR+ E+ + + + + + + IS+ G+I R+ V Sbjct: 478 DE-----RRS---EIVYSSEEFNPEDFYADDEMIITISHMGYIKRTPLSEFRAQNRGGVG 529 Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLN 597 ++ D ++ A + ++ + GK Y L + G G AIQ L++++ Sbjct: 530 SKGTETRDADFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTKNSKGRAIQNLLNID 589 Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG---KTFLKVSSEEKMKLVV 654 + D V A+ L V + + + ++ T+ G KT L+ S + V Sbjct: 590 SD-DAVNAY--------LRVKNLNDQEFINSHYVLFCTKNGVIKKTLLEQYSRPRQNGVN 640 Query: 655 KVT--------------GDH-VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGIS 698 +T GD+ + + N + + F + M R GVR + + G Sbjct: 641 AITIREDDRVIEVRMTNGDNEIIIANRNGRAIRFHESAVRVMGRTATGVRGMTLDEDGQD 700 Query: 699 DV---ICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752 +V IC K E T + + + Y + + RGG G ++GK ++ Sbjct: 701 EVVGMICIKDPEAETIMVVSEQGYGKRSDIEDYRKTNRGGKGVKTMNITDKTGKLVT 757 >gi|289523659|ref|ZP_06440513.1| DNA gyrase, A subunit [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289503351|gb|EFD24515.1| DNA gyrase, A subunit [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 812 Score = 383 bits (983), Expect = e-104, Method: Compositional matrix adjust. Identities = 271/761 (35%), Positives = 417/761 (54%), Gaps = 49/761 (6%) Query: 22 LRFALEER----YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSAR 77 LR +EE YL YA+S I RA+PD +DG KPV RRI++AM E+GL ++KSAR Sbjct: 11 LRLPIEEEIKLSYLDYAMSVIVGRALPDAKDGLKPVQRRILYAMMELGLRSNQPYRKSAR 70 Query: 78 IVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMT 137 IVGE +GK HPHGD ++YD++VR+AQ F RYPL+ GQGNFG+IDGD AA RYTEAR++ Sbjct: 71 IVGETMGKYHPHGDAAIYDAMVRMAQDFSMRYPLVDGQGNFGSIDGDPPAAMRYTEARLS 130 Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197 + E +L+ ++ED VD+ ++E EP+V PS PNLL NG+SGIAVGMAT+IP HN+ Sbjct: 131 PLGEEMLRDINEDTVDWGPNFDETLQEPLVLPSLLPNLLVNGSSGIAVGMATNIPPHNLS 190 Query: 198 EICEAALALIDNPE-ISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ +A LID E + + ++E + GPDFPTGG I RE I+ +YR GRG +R R Sbjct: 191 EVVDALCLLIDRGEDVELGDIIEVMPGPDFPTGGTIT-GREGIINAYRTGRGKIVLRGRV 249 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316 +E++ RG ++VTEIPY V K LIE IA + + + D+RDES D V+ Sbjct: 250 SIEQMKRGKTSLIVTEIPYMVNKVTLIEIIARGVQEGYLTGIADLRDESDRDGIRVVIEL 309 Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376 R DP L+++ ++ + ++T F + +N+ + VP+ + L +LK +L HRR+V+ RR+ Sbjct: 310 QRDADPHLVLKQLYSRTPLQTTFGV-INLALVDGVPRELGLIELLKIFLDHRRDVVRRRT 368 Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVDAILN 433 ++R++ + R I++GL+ A IDEIIA+I+ + ++ F TE Q AIL+ Sbjct: 369 NYRLRKAEERAHIVEGLVKALDMIDEIIALIKRSKDAQEARVGLMDNFGFTELQAQAILD 428 Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493 +RL+ L LE +++ EL +LL + E S+L + + + E+ E+K + + Sbjct: 429 MRLQRLTNLERSKLEEELRHLLKDIEMYHSILENPSVLDSVVKEELTELKRQYGDA---- 484 Query: 494 RRRTTFCE--VSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551 R+T + V AD +I +E I VV+S G++R L K L Sbjct: 485 -RKTEIVDELVEVAD-----DELIPEEDIVVVLSKDGYLRRASLGDYHLQGRGGKGIKGL 538 Query: 552 K-----IALHAHTTDR--ILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLNHNQDI 602 K + + A TT I L ++ G+ + + G LL G G+ + L N+ + Sbjct: 539 KQKDDEVEMFAATTTHHDIFLFTSKGRVFAI-KGYLLPEPKNGKGKHVSSFFTLEENERV 597 Query: 603 VTAFVYDSTCK----LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG 658 V + + T + + +G A ++ SE+ TR G+ + + + + V +G Sbjct: 598 VA--IKEDTMHGARFVFFATERGIAKRLDVSELANLTRAGRRVITLDDGDFIARVRFTSG 655 Query: 659 -DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVI--CFKICEGLT--WI 712 D + V + L S + M R +GVR + SDV+ C + EG+ +I Sbjct: 656 EDELLFVSAKGQALRTSEQEFRPMGRQARGVRAIRLSE---SDVLVGCEPLQEGMAILFI 712 Query: 713 DSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753 G S ++ L RGG G + R+G + + Sbjct: 713 SEKGVGKRTSFDEF--PLHHRGGSGVRAMRLSSRTGSLVGA 751 >gi|291548763|emb|CBL25025.1| DNA gyrase subunit A [Ruminococcus torques L2-14] Length = 849 Score = 383 bits (983), Expect = e-104, Method: Compositional matrix adjust. Identities = 244/667 (36%), Positives = 383/667 (57%), Gaps = 38/667 (5%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 + V V L+ +E Y+ YA+S I RA+PD+RDG KPV RRI+++M E+ +K Sbjct: 7 DKVHEVDLKKTMETSYIDYAMSVIAARALPDVRDGLKPVQRRILYSMIELNNGPDKPHRK 66 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 ARIVG+ +GK HPHGD S+Y +LV LAQ + RYPL+ G GNFG++DGD AAA RYTEA Sbjct: 67 CARIVGDTMGKYHPHGDSSIYGALVNLAQEWSTRYPLVDGHGNFGSVDGDGAAAMRYTEA 126 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 R+++++ + ++++ VDF ++E + EP V PS+FPNLL NGTSGIAVGMAT+IP H Sbjct: 127 RLSKISMEMTADINKNTVDFIPNFDETEKEPTVLPSRFPNLLVNGTSGIAVGMATNIPPH 186 Query: 195 NVQEICEAALALIDNP-----EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249 N++E+ A + +ID+ E +IE++LE + GPDFPTG I+ +R I E+YR GRG Sbjct: 187 NLREVISAVVQIIDDQIADKEETTIEEILEIVKGPDFPTGAEILGTR-GIEEAYRTGRGK 245 Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309 RVRA +E + G I+VTE+PY V K+RLIEKIAEL+ K+I + D+ D+S + Sbjct: 246 IRVRAVTNIEPMQNGKNRIIVTELPYMVNKARLIEKIAELVRDKKIDGITDLSDQSNREG 305 Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369 + R ++P++++ ++ + ++ F + M L + P+VM L +L+ +L H+ Sbjct: 306 MRICIELRRDVNPNVILNQLYKHTQLQDTFGVIMLAL-VDNQPKVMNLLEMLQYYLRHQE 364 Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTEN 426 +V+ RR+ + + R IL+GLLIA NIDE+I IIR N + K ++ RF L++ Sbjct: 365 DVVTRRTQYDLNKAQERAHILEGLLIALDNIDEVIRIIRGSKNVQEAKAELIKRFGLSDV 424 Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486 Q AI+++RLR+L LE +I++E L+ + E+ ++L K I EI + E Sbjct: 425 QAQAIVDMRLRALTGLEREKIEAEYAELMKKIEEYKAILADKKLLLGVIKKEILVIAE-- 482 Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD------- 539 K D R + F E + + +I +E + + ++ G+I+ + + Sbjct: 483 -KYGDDRRTKIGFDEFDIS-----MEDLIPRENVVITMTKLGYIKRMSMDTFKSQNRGGK 536 Query: 540 -LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEAIQLLIDL 596 + + E D ++ + I+ + G+ Y L A + +GR G AI L+ L Sbjct: 537 GIKGMQTLEDDYIRELFITTSHHYIMFFTNTGRVYRLKAYEIPEAGRTARGTAIINLLQL 596 Query: 597 NHNQDIVTAFV----YDSTCKLLVVSSKGNAFIVEESEI--IANTRKGKTFLKVSSEEKM 650 + I TA + Y+ L + + KG +V+++ I AN RK V E+ Sbjct: 597 MPEEKI-TAIIPLREYEEGKYLFMATEKG---LVKKTPIQDYANVRKTGLAAIVLREDDK 652 Query: 651 KLVVKVT 657 + VK+T Sbjct: 653 LIEVKIT 659 >gi|218131112|ref|ZP_03459916.1| hypothetical protein BACEGG_02717 [Bacteroides eggerthii DSM 20697] gi|217986632|gb|EEC52966.1| hypothetical protein BACEGG_02717 [Bacteroides eggerthii DSM 20697] Length = 842 Score = 383 bits (983), Expect = e-104, Method: Compositional matrix adjust. Identities = 252/777 (32%), Positives = 414/777 (53%), Gaps = 57/777 (7%) Query: 12 LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71 L ++ + +++ ++ Y+ Y++S I RA+PD+RDGFKPVHRRI+ M +G Sbjct: 2 LEQDRIIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILFGMMGLGNTSDKP 61 Query: 72 FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131 +KKSAR+VGEV+GK HPHGD SVY +LVR+AQP+ RY L+ GQGN+G++DGDSAAA RY Sbjct: 62 YKKSARVVGEVLGKYHPHGDSSVYGALVRMAQPWAMRYMLVDGQGNYGSVDGDSAAAMRY 121 Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191 TE R+ ++ E ++Q +D++ VD + +++ EP V P++ PNLL NG SGIAVGMAT++ Sbjct: 122 TECRLQKIGEEMMQDLDKETVDMQTNFDDSLLEPTVMPTRIPNLLVNGASGIAVGMATNM 181 Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251 P+HN+ E+ +A +A IDN +I IE L+ Y+ PDFPTGG I + E+Y GRG Sbjct: 182 PTHNLSEVIDACIAYIDNNDIDIESLMTYVKAPDFPTGGYIY-GMSGVREAYLTGRGRVV 240 Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVR 310 +RA+ +E I+VTEIPY V K+ LI+ IA+L KRI + + DES E +R Sbjct: 241 MRAKAEIETTSTHDK-IIVTEIPYGVNKAELIKSIADLANEKRIEGISNANDESDREGMR 299 Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370 IV+ K R + +++ ++ ++ ++T F +N L GR P+++ L ++K ++ HR + Sbjct: 300 IVIDVK-RDANASVVLNKLYKMTLLQTSFGVNNVALVHGR-PRLLNLKELIKYFVEHRHD 357 Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQ 427 V+ RR+ + ++ R IL+GL+IA NIDE+I IIR P ++ RF LTE Q Sbjct: 358 VVIRRTQYDLRKAKERAHILEGLIIASDNIDEVIKIIRAAKTPNDAISGLMERFELTEIQ 417 Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487 AI+ +RLR L L + Q+ +E + + + ++ +L + + I E+ E+K+ + Sbjct: 418 SRAIVEMRLRQLTGLMQDQLHAEYEEIQKQIAYLEEILVNDELCRKVIKDELIEIKDKYG 477 Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVD 539 RR+ E+ + + + + + + IS+ G+I R+ V Sbjct: 478 DE-----RRS---EIVYSSEEFNPEDFYADDEMIITISHMGYIKRTPLSEFRAQNRGGVG 529 Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLN 597 ++ D ++ A + ++ + GK Y L + G G AIQ L++++ Sbjct: 530 SKGTETRDEDFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTKNSKGRAIQNLLNID 589 Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG---KTFLKVSSEEKMKLVV 654 + D V A+ L V + + + ++ T+ G KT L+ S + V Sbjct: 590 SD-DAVNAY--------LRVKNLNDQDFINSHYVLFCTKNGVIKKTLLEQYSRPRQNGVN 640 Query: 655 KVT---------------GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGIS 698 +T + + + N + + F + + M R GVR + + G Sbjct: 641 AITIREDDRVIEVRMTNGNNEIIIANRNGRAIRFHENAVRVMGRTATGVRGMTLDEDGQD 700 Query: 699 DV---ICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752 +V IC K E T + + + Y + + RGG G ++GK ++ Sbjct: 701 EVVGMICIKDPEAETIMVVSEQGYGKRSDIEDYRKTNRGGKGVKTMNITDKTGKLVT 757 >gi|282896504|ref|ZP_06304524.1| DNA gyrase, subunit A [Raphidiopsis brookii D9] gi|281198610|gb|EFA73491.1| DNA gyrase, subunit A [Raphidiopsis brookii D9] Length = 830 Score = 383 bits (983), Expect = e-104, Method: Compositional matrix adjust. Identities = 247/691 (35%), Positives = 389/691 (56%), Gaps = 45/691 (6%) Query: 35 LSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSV 94 +S I RA+PD RDG KPVHRRI++AM E+GL F+K AR+VGEV+GK HPHGD +V Sbjct: 1 MSVIVGRALPDARDGLKPVHRRILYAMHELGLLHDRPFRKCARVVGEVLGKYHPHGDTAV 60 Query: 95 YDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV-AELILQGVDEDAVD 153 YD+LVR+AQ F R PLI+G GNFG+ID D AA RYTE R+ + + +LQ ++ + VD Sbjct: 61 YDALVRMAQDFSMRSPLINGHGNFGSIDNDPPAAMRYTECRLQALTSSSLLQDIESETVD 120 Query: 154 FRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEIS 213 F D ++ EP V PS+ P LL NG+SGIAVGMAT+IP HN+ E+ + +ALI NPEI+ Sbjct: 121 FIDNFDGSQQEPTVLPSRIPQLLLNGSSGIAVGMATNIPPHNLGELIDGLVALIHNPEIT 180 Query: 214 IEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSW----CIV 269 +L++Y+ GPDFPTG I+ + +I E+Y GRG +R +E + + + I+ Sbjct: 181 DTQLMQYVHGPDFPTGAQILGT-SAIKEAYTTGRGSITMRGVATIETIQQRNRPEREAII 239 Query: 270 VTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKNRSLDPDLLMES 328 +TE+PYQ K+ LIEKIAEL+ K+I + DIRDES D +RIV+ K S P +++ + Sbjct: 240 ITELPYQTNKAALIEKIAELVNDKKIDGIADIRDESDRDGMRIVIELKRDSY-PRVVLNN 298 Query: 329 IFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVE 388 ++ + ++T F NM L G PQ++ L L +L R E + RR+ ++++ + R Sbjct: 299 LYKQTPLQTNFGANMLALVNGE-PQILTLKNFLTVFLDFRIETINRRTRYQLRKAEERDH 357 Query: 389 ILKGLLIAYLNIDEIIAIIRNE-DKP--KPVMVSRFSLTENQVDAILNLRLRSLRKLEEY 445 +L+GLLIA ++D II +IRN D P K +++ + L+E Q DAIL ++LR L LE Sbjct: 358 LLQGLLIALAHLDSIINLIRNAPDAPTAKGELINSYGLSEVQADAILQMQLRRLTALEAD 417 Query: 446 QIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRA 505 +I+ E + L + + +L+ ++ I E ++K F+ RRTT ++ A Sbjct: 418 KIRLEHEELQLQITDLRDILDRRERVLEIIETEAGQIKTQFTTP-----RRTT---ITHA 469 Query: 506 DKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD--------LSALHFKEGDSLKIALHA 557 + +I E + ++++ +G+I+ + + + + KE D+++ L Sbjct: 470 EGEIDDIDLIANEKVLILLTQQGYIKRMPVSTFESQNRATRGKAGAKVKEDDTIEHFLTC 529 Query: 558 HTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD--S 610 D +L S G KAY +P G+ S G I ++ + + I + S Sbjct: 530 CDHDSVLFFSDRGVVYSLKAYQIPEGSRTS---RGTPIVQMLPIPKEEKITSIVSVSEFS 586 Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE--KMKLVVKVTGDHVAVVGENR 668 + + LV+ +KG E +N R + +S EE +++ V + + ++G + Sbjct: 587 SEEYLVMLTKGGNIKKTALEAFSNIR-ANGLIAISLEEGDQLRWVRRAKPEDSVMIGSRQ 645 Query: 669 KLLIF---SIDQIPEMSRG-KGVRLQSYKDG 695 + I DQ+ + R +GV+ K G Sbjct: 646 GMAIHFRCDNDQMRPLGRATRGVKSMKLKTG 676 >gi|126696507|ref|YP_001091393.1| DNA gyrase subunit A [Prochlorococcus marinus str. MIT 9301] gi|126543550|gb|ABO17792.1| DNA gyrase/topoisomerase IV, subunit A [Prochlorococcus marinus str. MIT 9301] Length = 865 Score = 383 bits (983), Expect = e-104, Method: Compositional matrix adjust. Identities = 226/591 (38%), Positives = 349/591 (59%), Gaps = 32/591 (5%) Query: 7 SNSNTLVEENVKAVS--LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEM 64 S+++ L E+N + + LR + YL YA+S I RA+PD RDG KPVHRRI++AM E+ Sbjct: 7 SDNSGLSEDNDRIIQTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYEL 66 Query: 65 GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124 GL G ++K AR+VGEV+GK HPHGD +VYD+LVR+AQ F R PLI G GNFG++D D Sbjct: 67 GLTSGRPYRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRMPLIDGHGNFGSVDND 126 Query: 125 SAAAYRYTEARMTQVA-ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183 AA RYTE+R+ + E +L+ ++ + VDF D ++ EP V P++ P LL NG+SGI Sbjct: 127 PPAAMRYTESRLQSLTDESLLEDIESETVDFADNFDGSQQEPTVLPARIPQLLLNGSSGI 186 Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243 AVGMAT+IP HN+ E+ ++I+NP I +L E I GPDFPTGG I+ R+ I E++ Sbjct: 187 AVGMATNIPPHNLGELINGLKSIINNPSIEDRELFEIIKGPDFPTGGQIL-GRDGIRETF 245 Query: 244 RLGRGGFRVRARWCVEE---VGRGSW-CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299 + GRG +R +E+ +GR +++TE+P+Q K+ LIE+IA+L+ K++ + Sbjct: 246 KTGRGSITMRGVANIEQIKSIGRAEKDAVIITELPFQTNKAALIERIADLVNEKKLEGIS 305 Query: 300 DIRDESAED-VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLD 358 DIRDES D +RIV+ K R P +++ ++F L+ ++ F N+ L G P + L Sbjct: 306 DIRDESDRDGMRIVIELK-RDAYPQVVLNNLFKLTPLQNNFSANILALVKGE-PTTLSLR 363 Query: 359 GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKP 415 +L +L R E + RR++F ++ + R I+KGLL+A +DEII +IR+ + Sbjct: 364 KMLDVFLDFRVETIRRRTAFLLKKAEERDHIVKGLLLALDAMDEIINLIRSAKDSISARE 423 Query: 416 VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQI 475 + + L+ Q DAIL ++LR L LE +IK E ++L + +LNS ++ + I Sbjct: 424 KLQNDHKLSSIQADAILQMQLRRLTALEADKIKGEHNDLTQKINLYQQILNSKERIFEII 483 Query: 476 ACEIREVKEIFSKSTDLGRRRTTFCEVSRA-DKATLQQAMIEKEPITVVISNRGWIRSLK 534 E+ ++ E FS R+T ++ D L I E V+++ G+++ + Sbjct: 484 LEELNKIDERFSSP-----RKTEILDLGGGLDDIDL----IANERSVVLLTEAGYLKRMP 534 Query: 535 SHSVDLSA--------LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPA 577 + + ++ KE D +K+ + + D +LL S G AY LPA Sbjct: 535 VNDFESTSRGSRGKAGTKTKEDDDVKLFISCNDHDTLLLFSDKGVAYALPA 585 >gi|317477005|ref|ZP_07936247.1| DNA gyrase, subunit A [Bacteroides eggerthii 1_2_48FAA] gi|316906798|gb|EFV28510.1| DNA gyrase, subunit A [Bacteroides eggerthii 1_2_48FAA] Length = 842 Score = 383 bits (983), Expect = e-104, Method: Compositional matrix adjust. Identities = 252/777 (32%), Positives = 414/777 (53%), Gaps = 57/777 (7%) Query: 12 LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71 L ++ + +++ ++ Y+ Y++S I RA+PD+RDGFKPVHRRI+ M +G Sbjct: 2 LEQDRIIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILFGMMGLGNTSDKP 61 Query: 72 FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131 +KKSAR+VGEV+GK HPHGD SVY +LVR+AQP+ RY L+ GQGN+G++DGDSAAA RY Sbjct: 62 YKKSARVVGEVLGKYHPHGDSSVYGALVRMAQPWAMRYMLVDGQGNYGSVDGDSAAAMRY 121 Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191 TE R+ ++ E ++Q +D++ VD + +++ EP V P++ PNLL NG SGIAVGMAT++ Sbjct: 122 TECRLQKIGEEMMQDLDKETVDMQTNFDDSLLEPTVMPTRIPNLLVNGASGIAVGMATNM 181 Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251 P+HN+ E+ +A +A IDN +I IE L+ Y+ PDFPTGG I + E+Y GRG Sbjct: 182 PTHNLSEVIDACIAYIDNNDIDIEALMTYVKAPDFPTGGYIY-GMSGVREAYLTGRGRVV 240 Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVR 310 +RA+ +E I+VTEIPY V K+ LI+ IA+L KRI + + DES E +R Sbjct: 241 MRAKAEIETTSTHDK-IIVTEIPYGVNKAELIKSIADLANEKRIEGISNANDESDREGMR 299 Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370 IV+ K R + +++ ++ ++ ++T F +N L GR P+++ L ++K ++ HR + Sbjct: 300 IVIDVK-RDANASVVLNKLYKMTLLQTSFGVNNVALVHGR-PRLLNLKELIKYFVEHRHD 357 Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQ 427 V+ RR+ + ++ R IL+GL+IA NIDE+I IIR P ++ RF LTE Q Sbjct: 358 VVIRRTQYDLRKAKERAHILEGLIIASDNIDEVIKIIRAAKTPNDAISGLMERFELTEIQ 417 Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487 AI+ +RLR L L + Q+ +E + + + ++ +L + + I E+ E+K+ + Sbjct: 418 SRAIVEMRLRQLTGLMQDQLHAEYEEIQKQIAYLEEILVNDELCRKVIKDELIEIKDKYG 477 Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVD 539 RR+ E+ + + + + + + IS+ G+I R+ V Sbjct: 478 DE-----RRS---EIVYSSEEFNPEDFYADDEMIITISHMGYIKRTPLSEFRAQNRGGVG 529 Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLN 597 ++ D ++ A + ++ + GK Y L + G G AIQ L++++ Sbjct: 530 SKGTETRDEDFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTKNSKGRAIQNLLNID 589 Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG---KTFLKVSSEEKMKLVV 654 + D V A+ L V + + + ++ T+ G KT L+ S + V Sbjct: 590 SD-DAVNAY--------LRVKNLNDQDFINSHYVLFCTKNGVIKKTLLEQYSRPRQNGVN 640 Query: 655 KVT---------------GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGIS 698 +T + + + N + + F + + M R GVR + + G Sbjct: 641 AITIREDDRVIEVRMTNGNNEIIIANRNGRAIRFHENAVRVMGRTATGVRGMTLDEDGQD 700 Query: 699 DV---ICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752 +V IC K E T + + + Y + + RGG G ++GK ++ Sbjct: 701 EVVGMICIKDPEAETIMVVSEQGYGKRSDIEDYRKTNRGGKGVKTMNITDKTGKLVT 757 >gi|295677285|ref|YP_003605809.1| DNA gyrase, A subunit [Burkholderia sp. CCGE1002] gi|295437128|gb|ADG16298.1| DNA gyrase, A subunit [Burkholderia sp. CCGE1002] Length = 860 Score = 383 bits (983), Expect = e-104, Method: Compositional matrix adjust. Identities = 228/611 (37%), Positives = 347/611 (56%), Gaps = 72/611 (11%) Query: 30 YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89 YL YA+S I RA+PD+RDG KPVHRR+++AM E+ D+ A+KKSARIVG+VIGK HPH Sbjct: 5 YLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNRAYKKSARIVGDVIGKYHPH 64 Query: 90 GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDE 149 GD +VYD++VR+AQ F RY L+ GQGNFG++DGD+AAA RYTE RM ++ +L +D+ Sbjct: 65 GDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAKIGHELLADIDK 124 Query: 150 DAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDN 209 + VDF Y+ ++EP + P++ PNLL NG+SGIAVGMAT+IP HN+ E+ +A L+ N Sbjct: 125 ETVDFVPNYDGSENEPAILPARIPNLLINGSSGIAVGMATNIPPHNLNEVVDACQHLLKN 184 Query: 210 PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS-WCI 268 PE +I++L+E I PDFPT GII + + YR GRG +RA EE+ RG I Sbjct: 185 PEATIDELIEIIPAPDFPTAGIIY-GVAGVRDGYRTGRGRVVMRALTHFEEIDRGQRMAI 243 Query: 269 VVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMES 328 +V E+PYQV K L+E+IAEL+ K++ + DIRDES + V+ R P++++ + Sbjct: 244 IVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKRGEVPEVVLNN 303 Query: 329 IFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVE 388 ++ + ++ F +NM L G+ P+++ L +L +L+HRREVL RR+ + ++ R Sbjct: 304 LYKATQLQDTFGMNMVALVDGQ-PKLLNLKEMLTCFLSHRREVLTRRTVYELRKARERGH 362 Query: 389 ILKGLLIAYLNIDEIIAIIRNEDKPKPV-----------------MVSR----------- 420 +L+GL +A NIDE IA+I+ P P+ M+SR Sbjct: 363 VLEGLAVALANIDEFIALIKAAPTP-PIAKQELMSRSWDSSLVREMLSRAETDNASAGGR 421 Query: 421 -------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKI 461 + L++ Q IL +RL+ L LE+ +I E +++A+ + Sbjct: 422 EAYRPEGLNPSFGMQADGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEYRDVMAQIADL 481 Query: 462 DSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPIT 521 +L + +I+ I V+E+ S + G R + E++ + T + +I + + Sbjct: 482 LDIL----ARPERISAII--VEELTSIKAEFGDARRSKIELNATELNT--EDLITPQEMV 533 Query: 522 VVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG--- 570 V +S+ G++ R+ K A KE D + A+T D IL S G Sbjct: 534 VTMSHAGYVKSQPLSEYRAQKRGGRGKQATSMKEDDWIDTLFIANTHDHILCFSNRGRVY 593 Query: 571 --KAYTLPAGN 579 K Y +P G+ Sbjct: 594 WVKVYEVPQGS 604 >gi|269303149|gb|ACZ33249.1| DNA gyrase, A subunit [Chlamydophila pneumoniae LPCoLN] Length = 834 Score = 383 bits (983), Expect = e-104, Method: Compositional matrix adjust. Identities = 232/635 (36%), Positives = 355/635 (55%), Gaps = 45/635 (7%) Query: 21 SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVG 80 +L ++E YL Y++S I RA+PD+RDG KP RRI++AM ++ L GA +K A+I G Sbjct: 12 NLEEEMKESYLRYSMSVIISRALPDIRDGLKPSQRRILYAMKQLSLSPGAKHRKCAKICG 71 Query: 81 EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVA 140 + G HPHG+ +Y +LVR+AQ + RYPL+ GQGNFG+IDGD AA RYTEAR+T A Sbjct: 72 DTSGDYHPHGESVIYPTLVRMAQNWAMRYPLVDGQGNFGSIDGDPPAAMRYTEARLTHSA 131 Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200 +++ +D+D VD Y+E EPVVFPSKFPNLL NG+SGIAVGMAT+IP HN+ E+ Sbjct: 132 MYLMEDLDKDTVDIVPNYDETKHEPVVFPSKFPNLLCNGSSGIAVGMATNIPPHNLGELI 191 Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEE 260 EA L L+ NP+ S++++L+ + GPDFPTGGII S E I +Y GRG +VRAR VEE Sbjct: 192 EATLLLLANPQASVDEILQVMPGPDFPTGGIICGS-EGIRSTYTTGRGKIKVRARLHVEE 250 Query: 261 -VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKNR 318 + I++TE+PY V KSRLIE+IA L+ K + + D+RDES +D +R+VL K + Sbjct: 251 NEDKHRESIIITEMPYNVNKSRLIEQIANLVNEKTLAGISDVRDESDKDGIRVVLEIK-K 309 Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378 ++++ ++ +D++ F NM L +P+ M + ++ W+ HR+EV+ RR+ + Sbjct: 310 GESSEIIINRLYKFTDVQVTFGANMLALDKN-LPRTMSIHRMISAWIRHRKEVIRRRTRY 368 Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAILNLR 435 + + R +L+G L A +D ++ IR N++ K ++ F TE Q AIL LR Sbjct: 369 ELNKAETRAHVLEGYLKALSCLDALVKTIRESGNKEHAKERIIESFGFTEPQALAILELR 428 Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495 L L LE +I+ E + LL + +L+ + I E++++ K + RR Sbjct: 429 LYQLTGLEAEKIQKEYEELLNKIAYYKQVLSDEGLVKDIIRNELQDL----LKHHKVARR 484 Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK----------SHSVDLSALHF 545 T + E + + IS +++ + H V + Sbjct: 485 TTIEFDADDIRDIEDIIT---NESVIITISGDDYVKRMPVKVFKEQRRGGHGV--TGFDM 539 Query: 546 KEGDS-LKIALHAHTTDRILLLSTDGKAY-----TLPAG----------NLLSGRGHGEA 589 K+G LK A T D +L+ + G+ Y LP G N L G GE Sbjct: 540 KKGAGFLKAVYSAFTKDYLLIFTNFGQCYWLKVWQLPEGERRAKGKPIINFLEGIRPGEE 599 Query: 590 IQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAF 624 + ++++ + + F++ +T + +V +AF Sbjct: 600 LAAILNIKNFDN--AGFLFLATKRGVVKKVSLDAF 632 >gi|37514963|dbj|BAC98438.1| GyrA protein [Burkholderia glumae] Length = 869 Score = 383 bits (983), Expect = e-104, Method: Compositional matrix adjust. Identities = 231/621 (37%), Positives = 347/621 (55%), Gaps = 72/621 (11%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 +SL + YL YA+S I RA+PD+RDG KPVHRR++ AM E+ D+ A+KKSARIV Sbjct: 11 ISLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRAYKKSARIV 70 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGD +VYD++VR+AQ F RY L+ GQGNFG++DGD+AAA RYTE RM ++ Sbjct: 71 GDVIGKYHPHGDIAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAKI 130 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 +L +D++ VDF Y+ +SEP + P++ PNLL NG+SGIAVGMAT+IP HN+ E+ Sbjct: 131 GHELLADIDKETVDFGPNYDGSESEPTILPARIPNLLINGSSGIAVGMATNIPPHNLSEV 190 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 +A L+ NPE ++++L+E I PDFPT GII + + YR GRG +RA E Sbjct: 191 VDACHHLLANPEATVDELIEIIPAPDFPTAGIIY-GVAGVRDGYRTGRGRVVMRAATHFE 249 Query: 260 EVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318 E+ RG I+V E+PYQV K L+E+IAEL+ K++ + DIRDES + V+ R Sbjct: 250 EIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKR 309 Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378 P++++ +++ + ++ F +NM L G+ P+++ L +L +LAHRREVL RR+ + Sbjct: 310 GEVPEVVLNNLYKSTQLQDTFGMNMVALVDGQ-PKLLNLKEMLVCFLAHRREVLTRRTIY 368 Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV-----------------MVSR- 420 ++ R +L+GL +A NIDE I II+ P P+ M++R Sbjct: 369 ELRKARERGHVLEGLAVALANIDEFIEIIKAAPTP-PIARQALMAKSWDSSLVREMLTRA 427 Query: 421 -----------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451 ++L+E Q IL +RL+ L LE+ +I E Sbjct: 428 ETENAAAGGREAYRPEGLNAAFGMQADGQYNLSETQAQEILQMRLQRLTGLEQDKIIGEY 487 Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511 ++A+ + +L ++ I E+ VK F G R + E++ + T Sbjct: 488 REVMAQIADLLDILARPERITTIITEELTAVKAEF------GDARRSKIELNATELNT-- 539 Query: 512 QAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRI 563 + +I + + V +S+ G++ R+ K A KE D ++ A+T D I Sbjct: 540 EDLITPQDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYI 599 Query: 564 LLLSTDG-----KAYTLPAGN 579 L S G K Y +P G+ Sbjct: 600 LCFSNRGRVYWVKVYEVPQGS 620 >gi|83720946|ref|YP_442169.1| DNA gyrase subunit A [Burkholderia thailandensis E264] gi|257138358|ref|ZP_05586620.1| DNA gyrase subunit A [Burkholderia thailandensis E264] gi|83654771|gb|ABC38834.1| DNA gyrase, A subunit [Burkholderia thailandensis E264] Length = 866 Score = 383 bits (983), Expect = e-104, Method: Compositional matrix adjust. Identities = 229/621 (36%), Positives = 349/621 (56%), Gaps = 72/621 (11%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 SL + + YL YA+S I RA+PD+RDG KPVHRR++ AM E+ D+ +KKSARIV Sbjct: 11 TSLEEEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRPYKKSARIV 70 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGD +VYD++VR+AQ F RY L+ GQGNFG++DGD+AAA RYTE RM ++ Sbjct: 71 GDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAKI 130 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 +L +D++ VDF Y+ + +P++ PS+ PNLL NG+SGIAVGMAT+IP HN+ E+ Sbjct: 131 GHELLADIDKETVDFGPNYDGSEMQPLILPSRIPNLLINGSSGIAVGMATNIPPHNLNEV 190 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 +A L L++NP+ S+++L+E I PDFPT GII + + YR GRG +RA E Sbjct: 191 VDACLYLLNNPQASVDELIEIIPAPDFPTAGIIY-GVAGVRDGYRTGRGRVVMRAATHFE 249 Query: 260 EVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318 E+ RG I+V E+PYQV K L+E+IAEL+ K++ + DIRDES + V+ R Sbjct: 250 EIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKR 309 Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378 P++++ +++ + ++ F +NM L + P+++ L IL+ +L+HRREVL RR+ + Sbjct: 310 GEVPEVVLNNLYKATQLQDTFGMNMVAL-VDNQPKLLNLREILQCFLSHRREVLTRRTVY 368 Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV-----------------MVSR- 420 ++ R +L+GL +A NIDE IAII+ P P+ M++R Sbjct: 369 ELRKARERGHVLEGLAVALANIDEFIAIIKAAPTP-PIAKQELMAKSWDSSLVREMLTRA 427 Query: 421 -----------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451 + L++ Q IL +RL+ L LE+ +I E Sbjct: 428 EAENAAAGGRAAYRPEGLSPAFGMQGDGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEY 487 Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511 +++A+ + +L ++ I E+ VK F G R + E++ + T Sbjct: 488 RDVMAQIADLLDILARPERITVMIGEELAAVKAEF------GDARRSKIELNATELNT-- 539 Query: 512 QAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRI 563 + +I + + V +S+ G++ R+ K A KE D ++ A+T D I Sbjct: 540 EDLITPQDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYI 599 Query: 564 LLLSTDG-----KAYTLPAGN 579 L S G K Y +P G+ Sbjct: 600 LCFSNRGRVYWVKVYEVPQGS 620 >gi|307730628|ref|YP_003907852.1| DNA gyrase subunit A [Burkholderia sp. CCGE1003] gi|307585163|gb|ADN58561.1| DNA gyrase, A subunit [Burkholderia sp. CCGE1003] Length = 862 Score = 383 bits (983), Expect = e-104, Method: Compositional matrix adjust. Identities = 228/611 (37%), Positives = 345/611 (56%), Gaps = 72/611 (11%) Query: 30 YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89 YL YA+S I RA+PD+RDG KPVHRR+++AM E+ D+ A+KKSARIVG+VIGK HPH Sbjct: 5 YLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNRAYKKSARIVGDVIGKYHPH 64 Query: 90 GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDE 149 GD +VYD++VR+AQ F RY L+ GQGNFG++DGD+AAA RYTE RM ++ +L +D+ Sbjct: 65 GDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAKIGHELLADIDK 124 Query: 150 DAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDN 209 + VDF Y+ ++EP + P++ PNLL NG+SGIAVGMAT+IP HN+ E+ +A L+ N Sbjct: 125 ETVDFTPNYDGSENEPAILPARIPNLLINGSSGIAVGMATNIPPHNLNEVVDACQHLLKN 184 Query: 210 PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS-WCI 268 P+ SI++L+E + PDFPT GII + + YR GRG +RA EE+ RG I Sbjct: 185 PDASIDELIEIVPAPDFPTAGIIY-GVAGVRDGYRTGRGRVVMRALTHFEEIDRGQRMAI 243 Query: 269 VVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMES 328 +V E+PYQV K L+E+IAEL+ K++ + DIRDES + V+ R P++++ + Sbjct: 244 IVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKRGEVPEVVLNN 303 Query: 329 IFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVE 388 ++ + ++ F +NM L G+ P+++ L +L +L+HRREVL RR+ + ++ R Sbjct: 304 LYKATQLQDTFGMNMVALVDGQ-PKLLNLKEMLSCFLSHRREVLTRRTVYELRKARERGH 362 Query: 389 ILKGLLIAYLNIDEIIAIIRNEDKPKPV-----------------MVSR----------- 420 +L+GL +A NIDE IAII+ P P+ M+SR Sbjct: 363 VLEGLAVALANIDEFIAIIKAAPTP-PIAKQELMARPWDSSLVREMLSRAETENASAGGR 421 Query: 421 -------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKI 461 + L++ Q IL +RL+ L LE+ +I E +++A+ + Sbjct: 422 EAYRPDGLNPSFGMQADGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEYRDVMAQIADL 481 Query: 462 DSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPIT 521 +L + +I I V E+ S + G R + E++ + T + +I + + Sbjct: 482 LDIL----ARPERITAII--VDELTSIKAEFGDARRSKIELNATELNT--EDLITPQEMV 533 Query: 522 VVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG--- 570 V +S+ G++ R+ K A KE D + A+T D IL S G Sbjct: 534 VTMSHAGYVKSQPLSEYRAQKRGGRGKQATSMKEDDWIDTLFIANTHDHILCFSNRGRVY 593 Query: 571 --KAYTLPAGN 579 K Y +P G+ Sbjct: 594 WVKVYEVPQGS 604 >gi|329954847|ref|ZP_08295864.1| DNA gyrase, A subunit [Bacteroides clarus YIT 12056] gi|328526951|gb|EGF53962.1| DNA gyrase, A subunit [Bacteroides clarus YIT 12056] Length = 842 Score = 382 bits (982), Expect = e-104, Method: Compositional matrix adjust. Identities = 251/777 (32%), Positives = 413/777 (53%), Gaps = 57/777 (7%) Query: 12 LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71 L ++ + +++ ++ Y+ Y++S I RA+PD+RDGFKPVHRRI+ M +G Sbjct: 2 LEQDRIIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILFGMMGLGNTSDKP 61 Query: 72 FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131 +KKSAR+VGEV+GK HPHGD SVY +LVR+AQP+ RY L+ GQGN+G++DGDSAAA RY Sbjct: 62 YKKSARVVGEVLGKYHPHGDSSVYGALVRMAQPWAMRYMLVDGQGNYGSVDGDSAAAMRY 121 Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191 TE R+ ++ E ++Q +D++ VD + +++ EP V P++ PNLL NG SGIAVGMAT++ Sbjct: 122 TECRLQKIGEEMMQDLDKETVDMQTNFDDSLLEPTVMPTRIPNLLVNGASGIAVGMATNM 181 Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251 P+HN+ E+ +A +A IDN +I IE L+ Y+ PDFPTGG I + E+Y GRG Sbjct: 182 PTHNLSEVIDACIAYIDNNDIDIEDLMTYVKAPDFPTGGYIY-GMSGVREAYLTGRGRVV 240 Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVR 310 +RA+ +E I+VTEIPY V K+ LI+ IA+L KRI + + DES E +R Sbjct: 241 MRAKAEIETTSTHDK-IIVTEIPYGVNKAELIKSIADLANEKRIEGISNANDESDREGMR 299 Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370 IV+ K R + +++ ++ ++ ++T F +N L GR P+++ L ++K ++ HR + Sbjct: 300 IVIDVK-RDANASVVLNKLYKMTLLQTSFGVNNVALVHGR-PRLLNLKDLIKYFVEHRHD 357 Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQ 427 V+ RR+ + ++ R IL+GL+IA NIDE+I IIR P ++ RF LTE Q Sbjct: 358 VVIRRTQYDLRKAKERAHILEGLIIASDNIDEVIKIIRAAKTPNDAISGLMERFELTEIQ 417 Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487 AI+ +RLR L L + Q+ +E + + + ++ +L + + I E+ E++ + Sbjct: 418 SRAIVEMRLRQLTGLMQDQLHAEYEEIQKQIAYLEEILVNDELCRKVIKDELIEIQNKYG 477 Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVD 539 RR+ E+ + + + + + + IS+ G+I R+ V Sbjct: 478 DE-----RRS---EIVYSSEEFNPEDFYADDEMIITISHMGYIKRTPLSEFRAQNRGGVG 529 Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLN 597 ++ D ++ A + ++ + GK Y L + G G AIQ L++++ Sbjct: 530 SKGTETRDEDFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTKNSKGRAIQNLLNID 589 Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG---KTFLKVSSEEKMKLVV 654 + D V A+ L V + + + ++ T+ G KT L+ S + V Sbjct: 590 SD-DAVNAY--------LRVKNLNDQDFINSHYVLFCTKNGVIKKTLLEQYSRPRQNGVN 640 Query: 655 KVT---------------GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGIS 698 +T + + + N + + F + + M R GVR + + G Sbjct: 641 AITIREDDRVIEVRMTNGNNEIIIANRNGRAIRFHENAVRVMGRTATGVRGMTLDEDGQD 700 Query: 699 DV---ICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752 +V IC K E T + + + Y + + RGG G ++GK ++ Sbjct: 701 EVVGMICIKDPEAETIMVVSEQGYGKRSDIEDYRKTNRGGKGVKTMNITDKTGKLVT 757 >gi|282860323|ref|ZP_06269392.1| DNA gyrase, A subunit [Prevotella bivia JCVIHMP010] gi|282586920|gb|EFB92156.1| DNA gyrase, A subunit [Prevotella bivia JCVIHMP010] Length = 863 Score = 382 bits (982), Expect = e-104, Method: Compositional matrix adjust. Identities = 230/669 (34%), Positives = 373/669 (55%), Gaps = 38/669 (5%) Query: 6 ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65 + + T+ + + +++ ++ Y+ Y++S I RA+PD+RDGFKPVHRRI+ M +G Sbjct: 1 MDENQTIDHDRIMRINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILFGMRGIG 60 Query: 66 LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125 +KK AR+VGEV+GK HPHGD SVY +LVR+ Q + RY L+ GQGNFG++DGDS Sbjct: 61 NFSNQPYKKCARVVGEVLGKFHPHGDSSVYGALVRMGQEWNMRYKLVDGQGNFGSVDGDS 120 Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185 AAA RYTE R+ ++ E ++ +++D VD + +++ SEP V P+K PNLL NG +GIAV Sbjct: 121 AAAMRYTECRLAKMGERVMDDIEKDTVDMVNNFDDTLSEPSVMPTKIPNLLVNGGNGIAV 180 Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245 GMAT+IP+HN+ E+ + A IDNPEI+ E L+++I PDFPTG I + + ++Y Sbjct: 181 GMATNIPTHNLSEVIDGCCAYIDNPEITTEGLMQFIPAPDFPTGAYIY-GLQGVKDAYET 239 Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305 GRG +RA+ + E G IVVTEIPY V K++LIE IA+L+ R+ + ++ DE+ Sbjct: 240 GRGRVVMRAKAEI-EAGDSHDKIVVTEIPYGVNKAQLIEYIADLVKEGRLEGISNVNDET 298 Query: 306 A-EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364 + +RIV+ K R + ++++ +F ++ +++ F +N L GR P+++ L +K + Sbjct: 299 GRQGMRIVVDVK-RDANANVILNKLFKMTALQSSFSVNCIALVNGR-PRLLNLRECIKYF 356 Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RF 421 + HR +V RR+ F ++ R IL+GL+IA NIDE++ IIR P + RF Sbjct: 357 VEHRHDVTIRRTQFDLKKAQERAHILEGLIIACDNIDEVVHIIRASKTPSEAQTNLEKRF 416 Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481 L E Q AI+++RL L L Q+ E + L+ + + +L++ ++ + E+ E Sbjct: 417 ELDELQSKAIVDMRLAQLTGLRMDQLHEEYEQLMQTIKSLQEILDNPERCKEVMKEELNE 476 Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR-----SLKSH 536 VKE + RRT E+ + + +P+ + IS+ G+I+ K Sbjct: 477 VKEKYGDD-----RRT---EIIPDEHEFNAEDFYPNDPVVITISHLGYIKRTPLTDFKEQ 528 Query: 537 S---VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQ 591 + V +E D + A +L + +G+ Y + ++ G G AIQ Sbjct: 529 ARGGVGSKGARTREKDFTEYIYPATMHQTMLFFTKNGRCYWMKCYDIPEGDKNSKGRAIQ 588 Query: 592 LLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG---KTFLKVSSEE 648 ++ L D V AF L + N +++ ++ T+KG KT L+ S Sbjct: 589 NMLSLEPG-DSVNAF--------LRIRGLDNEEFLDKHYVVFVTKKGLVKKTSLRAYSRP 639 Query: 649 KMKLVVKVT 657 + V+ + Sbjct: 640 RTNGVIAIN 648 >gi|2645226|gb|AAB87144.1| topoisomerase II subunit A [Thermotoga maritima MSB8] Length = 804 Score = 382 bits (982), Expect = e-104, Method: Compositional matrix adjust. Identities = 226/610 (37%), Positives = 360/610 (59%), Gaps = 27/610 (4%) Query: 26 LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85 L E YL Y++S I RAIPD+RDG KPV RRI++ M E+GL + KKSARIVGEV+GK Sbjct: 14 LVESYLLYSMSVIVGRAIPDVRDGLKPVQRRILYGMYELGLKHNSPTKKSARIVGEVMGK 73 Query: 86 LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145 HPHGD VYD+LVR+A PF RYPLI GQGNFG+ID D AA RYTEAR+T++AE +L+ Sbjct: 74 YHPHGDAPVYDALVRMAHPFTMRYPLIEGQGNFGSIDRDPPAAMRYTEARLTRLAEEMLE 133 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 ++++ V+ D ++ E V PSK PNL+ NG SGIAVGMAT+IP HN+ E +A + Sbjct: 134 DIEKNTVNMIDNFDGTLKETEVLPSKVPNLIINGASGIAVGMATNIPPHNLSETVDALIY 193 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265 LID+PE ++E+L+++I GPDFPTG ++V + E + + Y GRG VR + VE+ G+ Sbjct: 194 LIDHPEATVEELMQFIKGPDFPTGAVVVNASE-LKKVYEEGRGRIIVRGKVHVED-GKRV 251 Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVL-FPKNRSLDPD 323 IV+TEIPY V K+ LIE+IA++ + +IRDES +RIV+ PK+ + + Sbjct: 252 KRIVITEIPYGVSKAGLIEQIAKIAKDDESLPIRNIRDESDKRGMRIVIEIPKD--ANEE 309 Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383 +++ +++ + ++ F + M V+ + P++M L G+++ +L HR EV+ RR+ + + Sbjct: 310 VIINNLYKRTALQDYFNVQMLVIDKHKRPRLMNLKGLMEAFLEHRFEVIRRRARYEYEQY 369 Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAILNLRLRSLR 440 RR +++GLL A I ++ I+RN + + ++ +TE Q AIL++RL L Sbjct: 370 TRRAHVVEGLLKAARAIGVVVDIVRNSKDVESARQSLMETLEITEEQAKAILDMRLSRLT 429 Query: 441 KLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500 LE +++E +L+ + ++ +L ++ + E +K+ + RRT Sbjct: 430 SLEIENLQNEYSDLVRKISEVKEILEKDEKVKEIMKKEFLYLKQQYGDP-----RRT--- 481 Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLK 552 EV+ ++ +I +E + + +S++G++ RS K ++ E D ++ Sbjct: 482 EVTDQSIEYNEEELIVEEDVVITLSHKGYLKSTPLNSYRSQKRGGKGITVSKLSEDDEVE 541 Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNL-LSGRG-HGEAIQLLIDLNHNQDIVTAFVYDS 610 + A T L ++ G+AY L L +GR G I ++L + IV + Sbjct: 542 FVVVAKNTSSTLFITNLGRAYVLKNYQLETTGRNTRGRHITAFLNLEDTEKIVALASLNG 601 Query: 611 TCKLLVVSSK 620 + LV+++K Sbjct: 602 EGRDLVIATK 611 >gi|326202762|ref|ZP_08192629.1| DNA gyrase, A subunit [Clostridium papyrosolvens DSM 2782] gi|325986839|gb|EGD47668.1| DNA gyrase, A subunit [Clostridium papyrosolvens DSM 2782] Length = 841 Score = 382 bits (982), Expect = e-104, Method: Compositional matrix adjust. Identities = 223/611 (36%), Positives = 360/611 (58%), Gaps = 30/611 (4%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 E+ + + + +++ ++ YA+S I +RA+PD+RDG KPVHRRI++ M G ++ Sbjct: 7 EQKIIPIDIESEMKKSFIDYAMSVIIDRALPDVRDGLKPVHRRILYTMFTSGFTPDKPYR 66 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KS VGE + HPHGD +VYDSLVR+AQ F R+PL+ G GNFG+ DGD+AAA RYTE Sbjct: 67 KSVATVGEALKSFHPHGDAAVYDSLVRMAQDFSLRHPLVDGHGNFGSRDGDAAAAMRYTE 126 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 A++ +++ +L +++D VDF+ ++E + EPVV P++FPNLL NG+SGIAVGMAT+IP Sbjct: 127 AKLAKISMEMLADINKDTVDFKPNFDEHEVEPVVLPARFPNLLVNGSSGIAVGMATNIPP 186 Query: 194 HNVQEICEAALALIDNPEISIEKL-LEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252 HN+ E + A++DNPEI+I++L ++YI GPDFPT I+ R I ++Y+ GRG V Sbjct: 187 HNLGETIDGICAVLDNPEITIDELIMKYIKGPDFPTAAKIIGKR-GIRDAYKTGRGRLIV 245 Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA--EDVR 310 R+ +EE+ IVVTEIPY V K+RL+EKIA+L+ K+I + I+DES E VR Sbjct: 246 RSEATIEELHGNRHRIVVTEIPYMVNKARLVEKIADLVKDKKIDGISFIQDESGREEPVR 305 Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL----SMGRVPQVMPLDGILKEWLA 366 IV+ K R +P++++ ++ + ++ F +NM + P+ + L ++ ++A Sbjct: 306 IVIDLK-RDANPNVVLNQLYKNTQLQESFSVNMVAIVPTEDKMYEPRTLNLKQVIDYYIA 364 Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSL 423 H+ +V+ RR+ F + + R IL+GL IA N+DE+I IIRN E K + RF Sbjct: 365 HQEDVIRRRTKFELDKAEARAHILEGLKIALDNLDEVIRIIRNSKTESVAKEKLSERFGF 424 Query: 424 TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483 ++ Q AI+++RL L LE +++SE + LL + + +L + I E+ +K Sbjct: 425 SDKQSQAIVDMRLGRLTGLEREKLESEYNELLEKIKYFRDVLANEILVHQIIKDELTVIK 484 Query: 484 EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD---- 539 ++ RRT ++ + + +I+++ + +++ G+I+ L + + Sbjct: 485 NKYADE-----RRT---KIEIDEDEIDIEDLIQEQESVITMTHFGYIKRLPADTYKSQRR 536 Query: 540 ----LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEAIQLL 593 + L +E D +K T I+ + G+ Y L A + SGR G AI L Sbjct: 537 GGKGIIGLSTREEDFVKNLFVTSTHHFIMFFTNKGRVYRLKAYEIPESGRQAKGTAIVNL 596 Query: 594 IDLNHNQDIVT 604 + LN ++ + T Sbjct: 597 LQLNGDEKVTT 607 >gi|209519336|ref|ZP_03268135.1| DNA gyrase, A subunit [Burkholderia sp. H160] gi|209500220|gb|EEA00277.1| DNA gyrase, A subunit [Burkholderia sp. H160] Length = 860 Score = 382 bits (982), Expect = e-104, Method: Compositional matrix adjust. Identities = 228/611 (37%), Positives = 346/611 (56%), Gaps = 72/611 (11%) Query: 30 YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89 YL YA+S I RA+PD+RDG KPVHRR+++AM E+ D+ A+KKSARIVG+VIGK HPH Sbjct: 5 YLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNRAYKKSARIVGDVIGKYHPH 64 Query: 90 GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDE 149 GD +VYD++VR+AQ F RY L+ GQGNFG++DGD+AAA RYTE RM ++ +L +D+ Sbjct: 65 GDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAKIGHELLADIDK 124 Query: 150 DAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDN 209 + VDF Y+ ++EP + P++ PNLL NG+SGIAVGMAT+IP HN+ E+ +A L+ N Sbjct: 125 ETVDFVPNYDGSENEPAILPARIPNLLINGSSGIAVGMATNIPPHNLNEVVDACQHLLKN 184 Query: 210 PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS-WCI 268 PE +I++L+E I PDFPT GII + + YR GRG +RA EE+ RG I Sbjct: 185 PEATIDELIEIIPAPDFPTAGIIY-GVAGVRDGYRTGRGRVVMRALTHFEEIDRGQRMAI 243 Query: 269 VVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMES 328 +V E+PYQV K L+E+IAEL+ K++ + DIRDES + V+ R P++++ + Sbjct: 244 IVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKRGEVPEVVLNN 303 Query: 329 IFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVE 388 ++ + ++ F +NM L G+ P+++ L +L +L+HRREVL RR+ + ++ R Sbjct: 304 LYKATQLQDTFGMNMVALVDGQ-PKLLNLKEMLTCFLSHRREVLTRRTVYELRKARERGH 362 Query: 389 ILKGLLIAYLNIDEIIAIIRNEDKPKPV-----------------MVSR----------- 420 +L+GL +A NIDE IA+I+ P P+ M+SR Sbjct: 363 VLEGLAVALANIDEFIALIKAAPTP-PIAKQELMSRAWDSSLVREMLSRAETDNASAGGR 421 Query: 421 -------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKI 461 + L++ Q IL +RL+ L LE+ +I E +++A+ + Sbjct: 422 EAYRPEGLNPSFGMQADGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEYRDVMAQIADL 481 Query: 462 DSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPIT 521 +L + +I+ I V E+ S + G R + E++ + T + +I + + Sbjct: 482 LDIL----ARPERISAII--VDELTSIKAEFGDARRSKIELNATELNT--EDLITPQEMV 533 Query: 522 VVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG--- 570 V +S+ G++ R+ K A KE D + A+T D IL S G Sbjct: 534 VTMSHAGYVKSQPLSEYRAQKRGGRGKQATSMKEDDWIDTLFIANTHDHILCFSNRGRVY 593 Query: 571 --KAYTLPAGN 579 K Y +P G+ Sbjct: 594 WVKVYEVPQGS 604 >gi|167581047|ref|ZP_02373921.1| DNA gyrase subunit A [Burkholderia thailandensis TXDOH] Length = 866 Score = 382 bits (982), Expect = e-104, Method: Compositional matrix adjust. Identities = 229/621 (36%), Positives = 349/621 (56%), Gaps = 72/621 (11%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 SL + + YL YA+S I RA+PD+RDG KPVHRR++ AM E+ D+ +KKSARIV Sbjct: 11 TSLEEEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRPYKKSARIV 70 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGD +VYD++VR+AQ F RY L+ GQGNFG++DGD+AAA RYTE RM ++ Sbjct: 71 GDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAKI 130 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 +L +D++ VDF Y+ + +P++ PS+ PNLL NG+SGIAVGMAT+IP HN+ E+ Sbjct: 131 GHELLADIDKETVDFGPNYDGSEMQPLILPSRIPNLLINGSSGIAVGMATNIPPHNLNEV 190 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 +A L L++NP+ S+++L+E I PDFPT GII + + YR GRG +RA E Sbjct: 191 VDACLYLLNNPQASVDELIEIIPAPDFPTAGIIY-GVAGVRDGYRTGRGRVVMRAATHFE 249 Query: 260 EVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318 E+ RG I+V E+PYQV K L+E+IAEL+ K++ + DIRDES + V+ R Sbjct: 250 EIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKR 309 Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378 P++++ +++ + ++ F +NM L + P+++ L IL+ +L+HRREVL RR+ + Sbjct: 310 GEVPEVVLNNLYKATQLQDTFGMNMVAL-VDNQPKLLNLREILQCFLSHRREVLTRRTVY 368 Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV-----------------MVSR- 420 ++ R +L+GL +A NIDE IAII+ P P+ M++R Sbjct: 369 ELRKARERGHVLEGLAVALANIDEFIAIIKAAPTP-PIAKQELMAKSWDSSLVREMLTRA 427 Query: 421 -----------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451 + L++ Q IL +RL+ L LE+ +I E Sbjct: 428 EAENAAAGGRAAYRPEGLSPAFGMQGDGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEY 487 Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511 +++A+ + +L ++ I E+ VK F G R + E++ + T Sbjct: 488 RDVMAQIADLLDILARPERITVMIGEELAAVKAEF------GDARRSKIELNATELNT-- 539 Query: 512 QAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRI 563 + +I + + V +S+ G++ R+ K A KE D ++ A+T D I Sbjct: 540 EDLITPQDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYI 599 Query: 564 LLLSTDG-----KAYTLPAGN 579 L S G K Y +P G+ Sbjct: 600 LCFSNRGRVYWVKVYEVPQGS 620 >gi|94309658|ref|YP_582868.1| DNA gyrase subunit A [Cupriavidus metallidurans CH34] gi|93353510|gb|ABF07599.1| DNA gyrase (type II topoisomerase), subunit A [Cupriavidus metallidurans CH34] Length = 897 Score = 382 bits (982), Expect = e-104, Method: Compositional matrix adjust. Identities = 230/628 (36%), Positives = 352/628 (56%), Gaps = 88/628 (14%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 VSL + YL YA+S I RA+PD+RDG KPVHRR++ AM E+ D+ +KKSARIV Sbjct: 11 VSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRPYKKSARIV 70 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGD +VYD++VR+AQ F RY L+ GQGNFG++DGD+AAA RYTE R++++ Sbjct: 71 GDVIGKYHPHGDTAVYDTIVRMAQNFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRLSKI 130 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A +LQ +D++ VDF Y+ + EP + P++ PNLL NG+SGIAVGMAT+IP HN+ E+ Sbjct: 131 AHEMLQDIDKETVDFEPNYDGSEKEPGILPARIPNLLINGSSGIAVGMATNIPPHNLNEV 190 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 +A L L+ NP+ ++++L+E + PDFPT GII + + E YR GRG +RAR E Sbjct: 191 VDACLHLLRNPDATVDELIELVPAPDFPTAGIIY-GIQGVREGYRTGRGRVVMRARTHFE 249 Query: 260 EVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318 ++ RG I+V E+PYQV K L+E+IAEL+ K++ + DIRDES + V+ R Sbjct: 250 DIDRGQRQAIIVDELPYQVNKRTLLERIAELVTEKKVEGISDIRDESDKSGMRVVIELKR 309 Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378 + P++++ +++ + ++ F +NM L G+ P+++ L +L +L+HRREV+ RR+ F Sbjct: 310 NEVPEVVLNNLYKNTQLQDTFGMNMVALVDGQ-PRLLNLRQMLDAFLSHRREVVTRRTVF 368 Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---------KP-------VMVSR-- 420 ++ R +L+GL +A NIDE IAII+ P KP M++R Sbjct: 369 ELRKARERGHVLEGLAVALANIDEFIAIIKAAPTPPIAKQELMSKPWDSGLVREMLARAE 428 Query: 421 --------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSE---- 450 + L++ Q IL +RL+ L LE+ +I E Sbjct: 429 SDTAGGRASYRPDGLPAVFGMQPDGLYRLSDGQAQEILQMRLQRLTGLEQDKIVQEYREV 488 Query: 451 ------LDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSR 504 L ++LA E+I +++ +E+ + + G R + E++ Sbjct: 489 MGLIADLLDILARPERITTII----------------TEELGAIRAEFGDERRSQIELNA 532 Query: 505 ADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALH 556 + T + +I + + V +S+ G++ R+ K A KE D + Sbjct: 533 TELDT--EDLITPQDMVVTLSHSGYMKSQPISEYRAQKRGGRGKLATATKEDDWIDTLFV 590 Query: 557 AHTTDRILLLSTDG-----KAYTLPAGN 579 A+T D IL S G K Y +P G+ Sbjct: 591 ANTHDYILCFSNRGRLYWLKVYEVPQGS 618 >gi|221213573|ref|ZP_03586547.1| DNA gyrase, A subunit [Burkholderia multivorans CGD1] gi|221166362|gb|EED98834.1| DNA gyrase, A subunit [Burkholderia multivorans CGD1] Length = 889 Score = 382 bits (982), Expect = e-104, Method: Compositional matrix adjust. Identities = 228/621 (36%), Positives = 349/621 (56%), Gaps = 72/621 (11%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 SL + YL YA+S I RA+PD+RDG KPVHRR++ AM E+ D+ A+KKSARIV Sbjct: 33 TSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRAYKKSARIV 92 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGD +VY+++VR+AQ F RY L+ GQGNFG+IDGD+AAA RYTE RM ++ Sbjct: 93 GDVIGKYHPHGDSAVYETIVRMAQDFSLRYMLVDGQGNFGSIDGDNAAAMRYTEIRMAKI 152 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 +L +D++ VDF Y+ + +P++ P++ PNLL NG+SGIAVGMAT+IP HN+ E+ Sbjct: 153 GHELLADIDKETVDFGPNYDGSEMQPLILPARIPNLLINGSSGIAVGMATNIPPHNLNEV 212 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 +A L++NP+ +I++L+E I PDFPT GII + + YR GRG +RA E Sbjct: 213 VDACQHLLNNPDATIDELIEIIPAPDFPTAGIIY-GVAGVRDGYRTGRGRVVMRAATHFE 271 Query: 260 EVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318 E+ RG I+V E+PYQV K L+E+IAEL+ K++ + DIRDES + V+ R Sbjct: 272 EIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKR 331 Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378 P++++ +++ + ++ F +NM L G+ P+++ L IL+ +L+HRREVL RR+ + Sbjct: 332 GEVPEVVLNNLYKATQLQDTFGMNMVALVDGQ-PKLLNLKEILQCFLSHRREVLTRRTVY 390 Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV-----------------MVSR- 420 ++ R +L+GL +A NIDE IAII+ P P+ M++R Sbjct: 391 ELRKARERGHVLEGLAVALANIDEFIAIIKAAPTP-PIAKQELMAKAWDSSLVREMLTRA 449 Query: 421 -----------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451 + L++ Q IL +RL+ L LE+ +I E Sbjct: 450 EAENAAAGGRAAYRPEGLNPAFGMQGDGLYKLSDTQAQEILQMRLQRLTGLEQDKIIGEY 509 Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511 +++A+ + +L ++ I E+ VK F G R + E++ + T Sbjct: 510 RDVMAQISDLLDILARPERITTMIGEELTTVKAEF------GDARRSKIELNATELNT-- 561 Query: 512 QAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRI 563 + +I + + V +S+ G++ R+ K A KE D ++ A+T D + Sbjct: 562 EDLITPQDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYM 621 Query: 564 LLLSTDG-----KAYTLPAGN 579 L S G K Y +P G+ Sbjct: 622 LCFSNRGRVYWIKVYEVPQGS 642 >gi|320009756|gb|ADW04606.1| DNA gyrase, A subunit [Streptomyces flavogriseus ATCC 33331] Length = 875 Score = 382 bits (982), Expect = e-104, Method: Compositional matrix adjust. Identities = 226/626 (36%), Positives = 359/626 (57%), Gaps = 33/626 (5%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 V+ V L ++ YL YA+S I RA+PD+RDG KPVHRR+++AM + G F K A Sbjct: 23 VEPVGLETEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMYDGGYRPEKGFYKCA 82 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+V+G HPHGD S+YD+LVRLAQP+ R PL+ GNFG+ D AAA RYTE +M Sbjct: 83 RVVGDVMGTYHPHGDSSIYDALVRLAQPWSLRMPLVDSNGNFGSPGNDPAAAMRYTECKM 142 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 ++ +++ +DE+ VDF+D Y+ + EP V P++ PNLL NG++GIAVGMAT+IP HN+ Sbjct: 143 MPLSMEMVRDIDEETVDFQDNYDGRNQEPTVLPARIPNLLVNGSAGIAVGMATNIPPHNL 202 Query: 197 QEICEAALALIDNPEISIEKLLEYII----GPDFPTGGIIVESRESIVESYRLGRGGFRV 252 +E+ A ++NPE S E+LL+ +I GPDFPTG ++V R+ I E+YR GRG + Sbjct: 203 REVAAGAQWYLENPEASHEELLDALIERIKGPDFPTGALVV-GRKGIEEAYRTGRGSITM 261 Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV--R 310 RA VEE+ +G C+VVTE+P+Q L +KIA+L+ ++ + D+RDE++ R Sbjct: 262 RAVVAVEEI-QGRQCLVVTELPFQTNPDNLAQKIADLVKDGKVGGIADVRDETSSRTGQR 320 Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370 +V+ K R +++ +++ +D+++ F NM L G VP+ + +D ++ W+ H+ E Sbjct: 321 LVVVLK-RDAVAKVVLNNLYKHTDLQSNFGANMLALVDG-VPRTLSIDAFIRHWVTHQIE 378 Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQ 427 V+ RR+ FR++ + R IL+GLL A I+E+IA+IR + + ++ + E Q Sbjct: 379 VIVRRTRFRLRKAEERAHILRGLLKALNAIEEVIALIRRSNTVEIAREGLMGLLEIDEIQ 438 Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487 +AIL ++LR L LE +I +E D L A+ + + +L S ++Q ++ E+ + + F Sbjct: 439 ANAILEMQLRRLAALEHQKITAEHDELQAKINEYNEILASPEKQRQIVSEELAAIVDKFG 498 Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVD 539 RR+ D + +I +E I V IS G++ RS K Sbjct: 499 DD-----RRSKLVPF---DGDMSIEDLIAEEDIVVTISRGGYVKRTKTDDYRSQKRGGKG 550 Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEAIQLLIDLN 597 + +E D + + T +L + G+ Y A L +GR G+ + L+ Sbjct: 551 VRGTKLREDDIVDHFFVSTTHHWLLFFTNKGRVYRAKAYELPDAGRDARGQHVANLLAFQ 610 Query: 598 HNQDI--VTAFVYDSTCKLLVVSSKG 621 ++ I + A LV+++KG Sbjct: 611 PDEQIAQILAIRDYEAAPYLVLATKG 636 >gi|187235574|gb|ACD02000.1| putative gyrase subunit A [Clostridium septicum] Length = 498 Score = 382 bits (982), Expect = e-104, Method: Compositional matrix adjust. Identities = 210/500 (42%), Positives = 324/500 (64%), Gaps = 20/500 (4%) Query: 44 PDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQ 103 PD+RDG KPVHRRI+++M E+GL ++K ARIVGEV+GK HPHGD SVYD+LVR+AQ Sbjct: 1 PDVRDGLKPVHRRILYSMHELGLSPEKGYRKCARIVGEVLGKYHPHGDSSVYDALVRMAQ 60 Query: 104 PFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDS 163 F RY L+ G GNFG++DGD+AAA RYTEA+M ++A +L+ +++D V+F ++ E+ Sbjct: 61 DFSMRYMLVDGHGNFGSVDGDNAAAMRYTEAKMNKIAAEMLRDINKDTVNFIPNFDGEEK 120 Query: 164 EPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIG 223 EP V PS++PNLL NG+SGIAVGMAT+IP HN+ E+ + + LIDNPE +I +L+ I G Sbjct: 121 EPEVLPSRYPNLLVNGSSGIAVGMATNIPPHNLGEVIDGTIMLIDNPESTILELMTVIKG 180 Query: 224 PDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLI 283 PDFPTG I+ + I +Y G+G VRA+ +EE I+VTEIPYQV K++LI Sbjct: 181 PDFPTGATIM-GKSGIRAAYETGKGRVIVRAKAEIEE-ENNRHRIIVTEIPYQVNKAKLI 238 Query: 284 EKIAELIIAKRIPLLEDIRDES-AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLN 342 E IA+L+ K+I + D+RDES E +RIV+ K + +P++++ ++ + M+ F + Sbjct: 239 ENIADLVKDKKIVGISDLRDESDREGMRIVIELK-KDANPNVVLNLLYKHTKMQDTFGVI 297 Query: 343 MNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDE 402 M L + PQV+ + +L +++ ++EV+ RR++F + + R IL+GL IA NIDE Sbjct: 298 MLAL-VNNEPQVLNIKQVLNYYISFQKEVITRRTTFELNKAEARAHILEGLRIALDNIDE 356 Query: 403 IIAIIR---NEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKE 459 +I+IIR + + ++ RF+L+E Q AIL +RLR L LE +I+ E L+ + Sbjct: 357 VISIIRGSKTSEIARNTLMERFNLSEKQSTAILEMRLRRLTGLERDKIEEEYAELMKLID 416 Query: 460 KIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCE--VSRADKATLQQAMIEK 517 ++S+L S ++ I E+ ++K T G R T E V+ D + +I++ Sbjct: 417 YLNSILASEEKLLGVIKDELLQIK------TKYGDERRTSIEKVVNEID----IEDLIQE 466 Query: 518 EPITVVISNRGWIRSLKSHS 537 E + V +++ G+I+ + + + Sbjct: 467 EEVVVTLTHTGYIKRISADT 486 >gi|307325038|ref|ZP_07604242.1| DNA topoisomerase (ATP-hydrolyzing) [Streptomyces violaceusniger Tu 4113] gi|306889184|gb|EFN20166.1| DNA topoisomerase (ATP-hydrolyzing) [Streptomyces violaceusniger Tu 4113] Length = 817 Score = 382 bits (982), Expect = e-104, Method: Compositional matrix adjust. Identities = 211/523 (40%), Positives = 317/523 (60%), Gaps = 15/523 (2%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 EE + + + ++ YL YA S I RA+PD RDG KPVHRRI++ M+EMGL F Sbjct: 15 EERILDIDVVDEMQGSYLEYAYSVIYSRALPDARDGLKPVHRRILYQMNEMGLRPERGFV 74 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYT 132 K AR+VGEV+GKLHPHGD S+YD+LVR+AQPF R P++ G GNFG++ + D AA RYT Sbjct: 75 KCARVVGEVMGKLHPHGDASIYDALVRMAQPFSMRLPMVDGHGNFGSLGNDDPPAAMRYT 134 Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192 E RM + L+ + +DE+ VDF Y+ + EPV P+ +PNLL NGTSGIAVGMAT++P Sbjct: 135 ECRMASASSLMTESIDEETVDFSPNYDGSEQEPVTLPAAYPNLLVNGTSGIAVGMATNMP 194 Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252 HN+ E+ AA LI +P ++ L+ ++ GPD PTGG IV + ++Y GRG F++ Sbjct: 195 PHNLGEVIAAARHLIRHPGADLDTLMRHVPGPDLPTGGRIV-GMSGVRDAYETGRGTFKI 253 Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD--ESAEDVR 310 RA VE+V +VVTE+P+ V ++I KI +L+ AK++ + D++D + +R Sbjct: 254 RATVAVEDVTARRKGLVVTELPFAVGPEKVISKIKDLVGAKKLQGIADVKDLTDREHGLR 313 Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370 +V+ KN +P+ ++E ++ L+ ME F +N L G+ P + L +L+ +L HR Sbjct: 314 LVIEIKN-GFNPEAVLEQLYKLTPMEESFGINNVALVDGQ-PLTLGLKELLEVYLDHRFN 371 Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQ 427 V+ RRS FR R+ +++GLL+A L+IDE+I +IR D + K ++ RF L+E Q Sbjct: 372 VVRRRSEFRRTKRRNRLHLVEGLLVALLDIDEVIRLIRQSDNAAEAKRSLIQRFGLSEVQ 431 Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487 IL+ LR L K + +++SE D L E E++ +L+S + ++ E+ V + F Sbjct: 432 TQYILDTPLRRLTKFDRLELESERDRLNTEIEELTRILDSDAELRKLVSGELAAVAKKFG 491 Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI 530 RRT E S A T + +P V++S+ G + Sbjct: 492 TP-----RRTVLLESSNA-PVTAVPLEVADDPCRVLLSSTGLL 528 >gi|295837750|ref|ZP_06824683.1| DNA gyrase subunit A [Streptomyces sp. SPB74] gi|197699828|gb|EDY46761.1| DNA gyrase subunit A [Streptomyces sp. SPB74] Length = 874 Score = 382 bits (982), Expect = e-104, Method: Compositional matrix adjust. Identities = 230/627 (36%), Positives = 354/627 (56%), Gaps = 34/627 (5%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 V+ V L ++ YL YA+S I RA+PD+RDG KPVHRR+++AM + G F K A Sbjct: 31 VEPVGLETEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMYDGGYRPEKGFYKCA 90 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+V+G HPHGD S+YD+LVRLAQ + R PL+ GNFG+ D AAA RYTE +M Sbjct: 91 RVVGDVMGNYHPHGDSSIYDALVRLAQTWSMRMPLVDSNGNFGSPGNDPAAAMRYTECKM 150 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 ++ +++ +DE+ VDF D Y+ EP V PS+FPNLL NG++GIAVGMAT+IP HN+ Sbjct: 151 APLSMEMVRDIDEETVDFSDNYDGRSQEPDVLPSRFPNLLINGSAGIAVGMATNIPPHNL 210 Query: 197 QEICEAALALIDNPEISIEKLLEYII----GPDFPTGGIIVESRESIVESYRLGRGGFRV 252 +E+ A +++PE S E+LL+ +I GPDFPTG ++V R+ I E+YR GRG + Sbjct: 211 REVAAGAQWYLEHPEASNEELLDALIERIKGPDFPTGALVV-GRKGIEEAYRTGRGSIPM 269 Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV--R 310 RA VEE+ + C+VVTE+PYQV L +KIA+L+ +I + D+RDE++ R Sbjct: 270 RAVVEVEEI-QNRQCLVVTELPYQVNPDNLAQKIADLVKDGKIGGIADVRDETSSRTGQR 328 Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370 +V+ K R +++ ++F +D++T F NM L G VP+ + LD ++ W+ H+ E Sbjct: 329 LVVVLK-RDAVAKVVLNNLFKHTDLQTNFSANMLALVDG-VPRTLSLDAFIRHWVTHQIE 386 Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQ 427 V+ RR+ FR++ + R IL+GLL A IDE+IA+IR + + ++ + E Q Sbjct: 387 VIVRRTRFRLRKAEERAHILRGLLKALDAIDEVIALIRRSETVEDARGGLMGLLEIDEIQ 446 Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487 +AIL ++LR L LE ++ E D L ++ ++L S ++Q ++ E+ ++ + F Sbjct: 447 ANAILEMQLRRLAALERQKLMQEHDELQRRIDEYHAILASPERQRQIVSDELGQIVDKFG 506 Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVD 539 RR+ D + +I +E I V IS G++ RS K Sbjct: 507 DD-----RRSQLVPF---DGDMSMEDLIAEEDIVVTISRSGYVKRTRTDDYRSQKRGGKG 558 Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEAIQLLIDLN 597 + KE D + T +L + G+ Y A L +GR G+ + L+ Sbjct: 559 VRGAKLKEDDIVDHFFVTTTHHWLLFFTNKGRVYRAKAYELPDAGRDARGQHVANLLAFQ 618 Query: 598 HNQDIVTAFV---YDSTCKLLVVSSKG 621 ++ I YD+ L++ + G Sbjct: 619 PDESIAQILAIRDYDAAPYLVLATQGG 645 >gi|325283050|ref|YP_004255591.1| DNA gyrase, A subunit [Deinococcus proteolyticus MRP] gi|324314859|gb|ADY25974.1| DNA gyrase, A subunit [Deinococcus proteolyticus MRP] Length = 808 Score = 382 bits (982), Expect = e-103, Method: Compositional matrix adjust. Identities = 205/520 (39%), Positives = 329/520 (63%), Gaps = 18/520 (3%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 ++ V + ++ ++ YA++ I +RA+PD+RDG KPV RRI++AM GL KSA Sbjct: 4 IQPVDITSEVKTNFINYAMNVIVDRALPDVRDGLKPVQRRIMYAMMLEGLYANHKHAKSA 63 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 +VGEV+ K HPHGD S+YD++VRL Q + RYP++ QGNFG+IDGD AA RYTEARM Sbjct: 64 SVVGEVMKKYHPHGDSSIYDAMVRLGQWWNMRYPMVHPQGNFGSIDGDPPAAMRYTEARM 123 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 T++AE +L ++++ + + Y+E EP V P+ PNLL NG SGIAVGMAT+IP HN+ Sbjct: 124 TRLAEELLADLEKETIVMKPNYDETTEEPSVLPAAVPNLLINGASGIAVGMATNIPPHNL 183 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 EIC LALID P +++ ++E++ GPDFPTGG I S++ I ++Y G +VR + Sbjct: 184 TEICNGLLALIDQPNMTLLDMMEHVQGPDFPTGGRI--SKQGIQDAYTTGHASLKVRGKA 241 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES--AEDVRIVLF 314 +EE S I+++EIPYQV K+ LI+ I+ + A +IP + +RDES E VRIV+ Sbjct: 242 RIEEKNNRSQ-IIISEIPYQVNKTNLIQTISAMYKAGKIPDISALRDESDRKEPVRIVIE 300 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K R P L++ ++ + +++ F + +N+ + P+V+PL ++ +L HRR+V+ R Sbjct: 301 LK-RGAIPTLVLNQLYKYTQLQSTFTV-INLSIVNGEPRVLPLIDTMRYFLDHRRDVVTR 358 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAI 431 R+ + ++ + R IL+GL+ A +IDE+IA+IR + + + +++RF L+E Q AI Sbjct: 359 RTQYELRKAEERAHILEGLIKALGHIDEVIALIRGSNTGAEARDALMARFELSEPQAQAI 418 Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491 L++RL+ L LE ++ SE D L K+ ++L K W +I EIRE+++ + Sbjct: 419 LDMRLQRLVGLEREKLMSEFDELQTLIGKLRAILGDEKLLWREIKKEIREIRDRYGDE-- 476 Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR 531 RR+T +S ++ ++ +I E + + ++ G+++ Sbjct: 477 ---RRST---ISALEEDISKEDLIAVEDMVITMTEAGYLK 510 >gi|291570611|dbj|BAI92883.1| DNA gyrase A subunit [Arthrospira platensis NIES-39] Length = 875 Score = 382 bits (982), Expect = e-103, Method: Compositional matrix adjust. Identities = 253/738 (34%), Positives = 396/738 (53%), Gaps = 81/738 (10%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 V SL +++ YL YA+S I RA+PD+RDG KPVHRRI++AM E+GL ++K A Sbjct: 12 VIPTSLTNEMQQSYLEYAMSVIVGRALPDVRDGLKPVHRRILYAMHELGLTPDRPYRKCA 71 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+V+GK HPHGDQSVYD+LVRL Q F RYPL++G GNFG++D D AA RYTE R+ Sbjct: 72 RVVGDVLGKYHPHGDQSVYDALVRLVQEFSSRYPLLAGHGNFGSVDNDPPAAMRYTETRL 131 Query: 137 TQVA-ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 + E +L V E VDF ++ EP V P++ P L+ NG+SGIAVGMAT+IP HN Sbjct: 132 ATIGNEGLLTQVGEATVDFTSNFDNSQQEPTVLPAQLPFLILNGSSGIAVGMATNIPPHN 191 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 + E+ + +ALIDNP++ +KL++ I GPDFPTGG I+ + E I E+Y GRG +R Sbjct: 192 LGEVVDGLIALIDNPDLCDQKLMQLIPGPDFPTGGEIIAT-EGIKEAYTSGRGSIVMRGV 250 Query: 256 WCVEEV-----GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDV 309 +E+V R IVVTE+P+QV K+ IEK+A L+ A ++ + DIRDES E + Sbjct: 251 AKIEQVPTSGRKRTKNAIVVTELPFQVNKAGWIEKVAALVNAGKLEGISDIRDESDREGI 310 Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369 R+V+ K R P++++ +++ +D+ ++F L + P+ + L IL+E+L R Sbjct: 311 RVVIELK-REATPEVVLHNLYQHTDLMSKFGAIFLAL-VNSQPRQLSLKQILEEFLGFRE 368 Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTEN 426 + L RR ++ +RR ++ GLL A +DE+I I+RN K + +R + Sbjct: 369 QTLLRRYRSELEIAERREHLVGGLLKALSALDEVIDILRNAPDGSSAKMSLETRLDFSTE 428 Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486 Q DAIL + LR L LE +++ E L A+ +++ LL+ + + E+R +K + Sbjct: 429 QADAILAMPLRRLTGLEGKKLQEEATELAAQIQRLRRLLSERSELLKSLKKELRSLKRRY 488 Query: 487 SKSTDLGRRRTTFCE----------------VSRADKAT----LQQAMIEKEPITVVISN 526 S RRT V KAT L+ + E V ++ Sbjct: 489 SDP-----RRTRIVSSESQESQSVSARSSKGVHPPSKATESKILRPQLPAVEETLVEMTL 543 Query: 527 RGWIRSLKSHSVDLSALHFKEG------DSLKIALHAHTT-DRILLLSTDGKAYTLPAGN 579 RG++R + H +LS +E D + + TT + +++++ GKAY L + Sbjct: 544 RGYVRRVTPH--NLSRPQSREDITIEAIDDFPVTSYLTTTAETLVIINRMGKAYPLNVAD 601 Query: 580 L--LSGRGHGEAIQLLIDLNHNQD--------IVTAFV---------------------Y 608 + +S + G + L+ + +D IV AF+ + Sbjct: 602 IPSVSLKSRGVPLITLLSPSATKDASTRPQDLIVAAFLGAGLQSSPVRPKTDADQRERAF 661 Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV-VKVTGDHVAVVGEN 667 L+++S++G + ++ + + +G T +K+ +++ + TGD V + Sbjct: 662 SDQTDLIMLSAEGKIKRLSGTDFMDLSARGITVMKLKDNDELSYANLAATGDQVVLATSG 721 Query: 668 RKLLIFSI--DQIPEMSR 683 +LL I DQIP M R Sbjct: 722 GRLLRLDINADQIPVMGR 739 >gi|139439851|ref|ZP_01773216.1| Hypothetical protein COLAER_02250 [Collinsella aerofaciens ATCC 25986] gi|133774779|gb|EBA38599.1| Hypothetical protein COLAER_02250 [Collinsella aerofaciens ATCC 25986] Length = 575 Score = 382 bits (982), Expect = e-103, Method: Compositional matrix adjust. Identities = 207/483 (42%), Positives = 308/483 (63%), Gaps = 12/483 (2%) Query: 26 LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85 +++ ++ Y++S I RA+PD+RDG KPVHRRI++AM+E G+ KKSA VGEVIGK Sbjct: 78 MKQSFIEYSMSVITARALPDVRDGLKPVHRRILYAMNESGIYPNRPHKKSAWTVGEVIGK 137 Query: 86 LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145 HPHGD +VY+++VRLAQ F R PLI G GNFGNIDGD AAA RYTE+R+ + A +L+ Sbjct: 138 YHPHGDSAVYEAMVRLAQWFSMRTPLIDGHGNFGNIDGDGAAAMRYTESRLAKPAMELLR 197 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 + +D VD++ Y+E +EPV P++FPNLL NG+ GIAVGMAT+I HN+ E EA Sbjct: 198 DLQKDTVDWQPNYDESLAEPVALPARFPNLLVNGSQGIAVGMATNIAPHNLAEAIEATCY 257 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265 LIDNP+ ++++L++ + GPDFPTG II+ S I +SY GRG VRA+ VE G Sbjct: 258 LIDNPDATVDELMQIMPGPDFPTGAIIMGS-AGIKQSYETGRGSITVRAKAHVESTKTGR 316 Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKNRSLDPDL 324 +V TEIPY V K L EKIA+L+ KRI + D+RDES + +R+V+ K + + P + Sbjct: 317 SRLVFTEIPYMVNKGTLQEKIAQLVNDKRIEGISDMRDESNQKGIRLVIELK-KGVIPQV 375 Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384 ++ +++ + ++T F N N+ + VP+ + L +L+ ++ H+ +V+ RR+ F ++ Sbjct: 376 VLNNLYKYTSLQTTFGAN-NLALVNGVPKCLSLREMLQHYIDHQVDVVTRRTRFDLKKAQ 434 Query: 385 RRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLTENQVDAILNLRLRSLRK 441 R IL+G L+A +IDE+I+IIR+ + + ++ RF T Q AIL ++LR L Sbjct: 435 ARAHILEGYLMALDHIDEVISIIRSSQTDSEASSRLIERFGFTPEQTTAILEMKLRRLTG 494 Query: 442 LEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCE 501 LE +I+ ELD L + LL ++ I E+RE+ + F +RRT + Sbjct: 495 LERDKIQEELDGLRRAIAYYEDLLAHEEKILGVIKEEMREISKKFGD-----KRRTEISQ 549 Query: 502 VSR 504 V + Sbjct: 550 VEK 552 >gi|197124862|ref|YP_002136813.1| DNA gyrase subunit alpha [Anaeromyxobacter sp. K] gi|196174711|gb|ACG75684.1| DNA gyrase, A subunit [Anaeromyxobacter sp. K] Length = 906 Score = 382 bits (981), Expect = e-103, Method: Compositional matrix adjust. Identities = 234/592 (39%), Positives = 361/592 (60%), Gaps = 30/592 (5%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 V++ + + YL Y++S I RA+PD+RDG KPVHRR+++AM GL + K A +V Sbjct: 28 VNIEQEMRKSYLDYSMSVIIGRALPDVRDGLKPVHRRVLYAMHTEGLHHNKRYSKCAGVV 87 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 GEV+ K HPHGD SVYD+LVRLAQ + RYPLI GQGNFG++DGD AAAYRYTE R+ ++ Sbjct: 88 GEVLKKYHPHGDASVYDALVRLAQDWNLRYPLIDGQGNFGSVDGDPAAAYRYTECRLEKL 147 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 ++ +L +D++ VD+ ++E EP V P++FPNLL NG++GIAVGMAT+IP HN+ E+ Sbjct: 148 SDHLLADIDKETVDWGPNFDESILEPRVLPTRFPNLLVNGSAGIAVGMATNIPPHNMGEV 207 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 +AA+ LI+NP+ ++ L+ +I GPDFPT G I R+ I +Y GRG +VRAR VE Sbjct: 208 IDAAVHLIENPKATVLDLMRFIPGPDFPTAGFI-HGRDGIRAAYEKGRGTIQVRARTVVE 266 Query: 260 EVGRGSW-CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLFPKN 317 + IVVTEIPYQV K++L+E IAEL+ KRI + D+RDES+ E +RIV+ K Sbjct: 267 IHPKTERETIVVTEIPYQVNKAKLVEHIAELVREKRIEGISDLRDESSREGMRIVIELKR 326 Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377 ++ +++ +++ + M+ F + M + G+ P+++ L +L+ ++AHRR+V+ RR+ Sbjct: 327 DAM-AQVVLNNLYAHTQMQMGFGVIMLAIDGGQ-PRILTLKEMLERFVAHRRDVVTRRTR 384 Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAII---RNEDKPKPVMVSRFSLTENQVDAILNL 434 + ++ R IL G IA +IDEII +I ++ D + M++RF+L+E Q AIL + Sbjct: 385 YELRKAREREHILLGYQIALDHIDEIIELIKKAKDRDAARDEMMARFALSELQAKAILEM 444 Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494 +L+ L LE +I EL + ++ +L S K + I E++EVK++F+ Sbjct: 445 QLQRLTGLERQKILDELAEVQKLITRLKEILASEKVLMDVIVGELKEVKQLFADE----- 499 Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFK 546 R T + +D +T + +I +E + V +S+ G++ R+ K + + Sbjct: 500 -RRTEIQGEASDLST--EDLIAEEEMVVTVSHLGYVKRNPVSLYRAQKRGGRGKTGAATR 556 Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTL------PAGNLLSGRGHGEAIQL 592 + D L+ A T +L+ S GK Y L PAG G+ +QL Sbjct: 557 DEDFLESLFVASTHSYLLVFSDKGKVYWLKVHEIPPAGRTAKGKPIVNLVQL 608 >gi|300362673|ref|ZP_07058849.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus gasseri JV-V03] gi|300353664|gb|EFJ69536.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus gasseri JV-V03] Length = 829 Score = 382 bits (981), Expect = e-103, Method: Compositional matrix adjust. Identities = 237/720 (32%), Positives = 387/720 (53%), Gaps = 53/720 (7%) Query: 6 ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65 ++N N + ++ V L + +L YA+S I RA+PD+RDG KPV RRI++ M E+G Sbjct: 1 MANENQPQDHRIRNVDLTHTMRSSFLDYAMSVIVARALPDVRDGLKPVQRRILYGMHELG 60 Query: 66 LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125 + +KKSARIVGEV+GK HPHGD S+Y ++ +AQ F RY L+ G GNFG++DGD Sbjct: 61 VTPDKQYKKSARIVGEVMGKFHPHGDSSIYLAMAHMAQDFSYRYMLVDGHGNFGSVDGDE 120 Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185 AA RYTEA+M+++A +L+ ++++ +D++ Y++ ++EPVV P++ PNLL NG SGIAV Sbjct: 121 PAAMRYTEAKMSKIAVEMLRDINKETIDWQRNYDDTENEPVVLPARIPNLLVNGASGIAV 180 Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245 GM T+IP HN+ E+ L+DNP+++ + L++ I GPDFPTGGI++ R I +Y Sbjct: 181 GMTTNIPPHNLAEVISGIHMLMDNPDVTTKDLMKVIPGPDFPTGGIVM-GRGGIYRAYET 239 Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305 G+G VRA+ +E G IVV+E+PY V K+ L++KIA+L K I + +RDES Sbjct: 240 GKGNIVVRAKTNIETEKSGRERIVVSELPYLVNKAELVKKIADLAREKTIDGITGVRDES 299 Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365 + + R +++ ++F + ++ F +NM + G P + L +L+ +L Sbjct: 300 DQTGMRITIDIRRDASASVVLNNLFKETQLQANFGMNMVAIVNG-APHFLTLKQMLEYYL 358 Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFS 422 H+ +V+ RR+ F ++ + R IL GL IA +IDEII IIR N D K ++ F Sbjct: 359 HHQEDVITRRTKFELKKAEARAHILAGLRIALDHIDEIIRIIRGSQNSDIAKAQLIQNFG 418 Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482 L + Q AIL++RL L LE +I++E +L A+ +L ++ I E+ ++ Sbjct: 419 LDDRQSQAILDMRLVRLTGLERDKIEAEYQDLQAKIADYKDILAKPERIDEIIYNELLDI 478 Query: 483 KEIFSKSTDLGRRRTTFCE---VSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539 ++ F RRT E VS D + +IE++ + + +++ G+I+ + + Sbjct: 479 QKRFGDD-----RRTKIAEGEAVSIED-----EDLIEQKDVLLTLTHNGYIKRMPADEFK 528 Query: 540 --------LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LP 576 + + ++ D + + + T D +L + GK Y+ LP Sbjct: 529 VQNRGGRGIKGMGVQDDDFINHLIFSSTHDFLLFFTNLGKVYSKKAYEIPEFGRNAKGLP 588 Query: 577 AGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR 636 NLL GE IQ +I++ D L V+ G + SE R Sbjct: 589 IVNLLE-LDKGEKIQAVINVPEGAD---------DNYLFFVTKMGTVKRTKVSEFQNIRR 638 Query: 637 KGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSR-GKGVRLQSYKD 694 G L + +++ V+ G ++G + + F+ + + M R GVR + +D Sbjct: 639 SGLIALTLRDGDELNNVLTTDGKQNILIGTHLGYAVTFNENDVRSMGRTAAGVRGINLRD 698 Score = 39.7 bits (91), Expect = 2.1, Method: Compositional matrix adjust. Identities = 44/161 (27%), Positives = 68/161 (42%), Gaps = 6/161 (3%) Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHN 599 L AL ++GD L L IL+ + G A T ++ S G A I+L N Sbjct: 641 LIALTLRDGDELNNVLTTDGKQNILIGTHLGYAVTFNENDVRS-MGRTAAGVRGINLRDN 699 Query: 600 QDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK---MKLVVKV 656 +V + + + ++LV+S KG SE R GK + EK + V V Sbjct: 700 DYVVGSDILEPNSEVLVISEKGYGKRTAASEYPVKGRGGKGIKTANITEKNGPLAGVTVV 759 Query: 657 TGDH-VAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDG 695 GD + ++ ++ F +D + + R GVRL DG Sbjct: 760 NGDEDIMLITSAGVMIRFDVDDVSQTGRATLGVRLIKVDDG 800 >gi|220919580|ref|YP_002494884.1| DNA gyrase, A subunit [Anaeromyxobacter dehalogenans 2CP-1] gi|219957434|gb|ACL67818.1| DNA gyrase, A subunit [Anaeromyxobacter dehalogenans 2CP-1] Length = 907 Score = 382 bits (981), Expect = e-103, Method: Compositional matrix adjust. Identities = 232/584 (39%), Positives = 357/584 (61%), Gaps = 30/584 (5%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 V++ + + YL Y++S I RA+PD+RDG KPVHRR+++AM GL + K A +V Sbjct: 29 VNIEQEMRKSYLDYSMSVIIGRALPDVRDGLKPVHRRVLYAMHTEGLHHNKRYSKCAGVV 88 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 GEV+ K HPHGD SVYD+LVRLAQ + RYPLI GQGNFG++DGD AAAYRYTE R+ ++ Sbjct: 89 GEVLKKYHPHGDASVYDALVRLAQDWNLRYPLIDGQGNFGSVDGDPAAAYRYTECRLERL 148 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 ++ +L +D++ VD+ ++E EP V P++FPNLL NG++GIAVGMAT+IP HN+ E+ Sbjct: 149 SDHLLADIDKETVDWGPNFDESILEPRVLPTRFPNLLVNGSAGIAVGMATNIPPHNMGEV 208 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 +AA+ LI+NP+ ++ L+ +I GPDFPT G I R+ I +Y GRG +VRAR VE Sbjct: 209 IDAAVHLIENPKATVLDLMRFIPGPDFPTAGFI-HGRDGIRAAYEKGRGTIQVRARTVVE 267 Query: 260 -EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLFPKN 317 IVVTEIPYQV K++L+E IAEL+ KRI + D+RDES+ E +RIV+ K Sbjct: 268 IHPKTERETIVVTEIPYQVNKAKLVEHIAELVREKRIEGISDLRDESSREGMRIVIELKR 327 Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377 ++ +++ +++ + M+ F + M + G+ P+++ L +L+ ++AHRR+V+ RR+ Sbjct: 328 DAM-AQVVLNNLYAHTQMQMGFGVIMLAIDGGQ-PRILTLKEMLERFVAHRRDVVTRRTR 385 Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAII---RNEDKPKPVMVSRFSLTENQVDAILNL 434 + ++ R IL G IA +IDEII +I ++ D + M++RF+L+E Q AIL + Sbjct: 386 YELRKAREREHILLGYQIALDHIDEIIELIKKAKDRDAARDEMMARFALSELQAKAILEM 445 Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494 +L+ L LE +I EL + ++ +L S K + I E++EVK++F+ Sbjct: 446 QLQRLTGLERQKILDELAEVQKLITRLKEILASEKVLMDVIVGELKEVKQLFADE----- 500 Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFK 546 R T + +D +T + +I +E + V +S+ G++ R+ K + + Sbjct: 501 -RRTEIQGEASDLST--EDLIAEEEMVVTVSHLGYVKRNPVSLYRAQKRGGRGKTGAATR 557 Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTL------PAGNLLSGR 584 + D L+ A T +L+ S GK Y L PAG G+ Sbjct: 558 DEDFLESLFVASTHSYLLVFSDKGKVYWLKVHEIPPAGRTAKGK 601 >gi|15835809|ref|NP_300333.1| DNA gyrase subunit A [Chlamydophila pneumoniae J138] gi|16752764|ref|NP_445032.1| DNA gyrase subunit A [Chlamydophila pneumoniae AR39] gi|33241616|ref|NP_876557.1| DNA gyrase subunit A [Chlamydophila pneumoniae TW-183] gi|12644500|sp|Q9Z8R4|GYRA_CHLPN RecName: Full=DNA gyrase subunit A gi|7189403|gb|AAF38315.1| DNA gyrase, subunit A [Chlamydophila pneumoniae AR39] gi|8978648|dbj|BAA98484.1| DNA gyrase subunit A [Chlamydophila pneumoniae J138] gi|28415638|dbj|BAC57415.1| DNA Gyrase Subunit A [Chlamydophila pneumoniae] gi|33236125|gb|AAP98214.1| DNA topoisomerase IV subunit A [Chlamydophila pneumoniae TW-183] Length = 834 Score = 382 bits (981), Expect = e-103, Method: Compositional matrix adjust. Identities = 231/635 (36%), Positives = 355/635 (55%), Gaps = 45/635 (7%) Query: 21 SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVG 80 +L ++E YL Y++S I RA+PD+RDG KP RR+++AM ++ L GA +K A+I G Sbjct: 12 NLEEEMKESYLRYSMSVIISRALPDIRDGLKPSQRRVLYAMKQLSLSPGAKHRKCAKICG 71 Query: 81 EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVA 140 + G HPHG+ +Y +LVR+AQ + RYPL+ GQGNFG+IDGD AA RYTEAR+T A Sbjct: 72 DTSGDYHPHGESVIYPTLVRMAQNWAMRYPLVDGQGNFGSIDGDPPAAMRYTEARLTHSA 131 Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200 +++ +D+D VD Y+E EPVVFPSKFPNLL NG+SGIAVGMAT+IP HN+ E+ Sbjct: 132 MYLMEDLDKDTVDIVPNYDETKHEPVVFPSKFPNLLCNGSSGIAVGMATNIPPHNLGELI 191 Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEE 260 EA L L+ NP+ S++++L+ + GPDFPTGGII S E I +Y GRG +VRAR VEE Sbjct: 192 EATLLLLANPQASVDEILQVMPGPDFPTGGIICGS-EGIRSTYTTGRGKIKVRARLHVEE 250 Query: 261 -VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKNR 318 + I++TE+PY V KSRLIE+IA L+ K + + D+RDES +D +R+VL K + Sbjct: 251 NEDKHRESIIITEMPYNVNKSRLIEQIANLVNEKTLAGISDVRDESDKDGIRVVLEIK-K 309 Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378 ++++ ++ +D++ F NM L +P+ M + ++ W+ HR+EV+ RR+ + Sbjct: 310 GESSEIIINRLYKFTDVQVTFGANMLALDKN-LPRTMSIHRMISAWIRHRKEVIRRRTRY 368 Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAILNLR 435 + + R +L+G L A +D ++ IR N++ K ++ F TE Q AIL LR Sbjct: 369 ELNKAETRAHVLEGYLKALSCLDALVKTIRESGNKEHAKERIIESFGFTEPQALAILELR 428 Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495 L L LE +I+ E + LL + +L+ + I E++++ K + RR Sbjct: 429 LYQLTGLEAEKIQKEYEELLNKIAYYKQVLSDEGLVKDIIRNELQDL----LKHHKVARR 484 Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK----------SHSVDLSALHF 545 T + E + + IS +++ + H V + Sbjct: 485 TTIEFDADDIRDIEDIIT---NESVIITISGDDYVKRMPVKVFKEQRRGGHGV--TGFDM 539 Query: 546 KEGDS-LKIALHAHTTDRILLLSTDGKAY-----TLPAG----------NLLSGRGHGEA 589 K+G LK A T D +L+ + G+ Y LP G N L G GE Sbjct: 540 KKGAGFLKAVYSAFTKDYLLIFTNFGQCYWLKVWQLPEGERRAKGKPIINFLEGIRPGEE 599 Query: 590 IQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAF 624 + ++++ + + F++ +T + +V +AF Sbjct: 600 LAAILNIKNFDN--AGFLFLATKRGVVKKVSLDAF 632 >gi|298489986|ref|YP_003720163.1| DNA gyrase subunit A ['Nostoc azollae' 0708] gi|298231904|gb|ADI63040.1| DNA gyrase, A subunit ['Nostoc azollae' 0708] Length = 869 Score = 382 bits (981), Expect = e-103, Method: Compositional matrix adjust. Identities = 243/714 (34%), Positives = 394/714 (55%), Gaps = 43/714 (6%) Query: 11 TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70 T +E + LR + + YL YA+S I RA+PD RDG KPVHRRI++AM E+GL Sbjct: 2 TTSQERIIPTDLRQEMSQSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMHELGLLPDR 61 Query: 71 AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130 F+K AR+VGEV+GK HPHGD +VYD+LVR+AQ F R PLI+G GNFG++D D AA R Sbjct: 62 PFRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRSPLINGHGNFGSVDNDPPAAMR 121 Query: 131 YTEARMTQVAEL-ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189 YTE R+ + +LQ ++ + VDF D ++ EP V PS+ P LL NG+SGIAVGMAT Sbjct: 122 YTECRLQALTSASLLQDIESETVDFADNFDGSQQEPTVLPSRIPQLLLNGSSGIAVGMAT 181 Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249 +IP HN+ E+ + +ALI N EI+ +L++Y+ GPDFPTG I+ + +I E+Y GRG Sbjct: 182 NIPPHNLGELIDGLVALIHNLEITNMQLMQYVHGPDFPTGAQILGT-SAIKEAYTTGRGS 240 Query: 250 FRVRARWCVEEVGRGSW----CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305 +R +E + + + I++TE+PYQ K+ LIEKIAEL+ K+I + DIRDES Sbjct: 241 VTMRGVATIETIEQRNRPEREAIIITELPYQTNKAALIEKIAELVNDKKIEGIADIRDES 300 Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365 D ++ R P +++ +++ + +++ F NM L G PQ++ L L +L Sbjct: 301 DRDGMRIVIELKRDAYPRVVLNNLYKQTPLQSNFGANMLALVNGE-PQLLTLKNFLSVFL 359 Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN-EDKP--KPVMVSRFS 422 R + RR+ ++++ + R IL+GLLIA ++D II IR+ D P K +++ + Sbjct: 360 DFRIATINRRTCYQLRKAEERDHILQGLLIALSHLDAIINRIRSASDAPSAKGELITNYG 419 Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482 L+E Q DAIL ++LR L LE +I+ E + L + + +L+ ++ I E+ ++ Sbjct: 420 LSEVQADAILQMQLRRLTALEADKIRLEHEELQVQIADLQDILDRRERVLEIIETEVTQI 479 Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL-- 540 K F+ RRT ++ A+ +I E + ++++ +G+I+ + ++ + Sbjct: 480 KTQFATP-----RRTI---ITHAEGDIDDIDLIANEKVLILLTKQGYIKRMPVNTFEAQS 531 Query: 541 ------SALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEA 589 + K+ D+++ L D +L S G + Y +P G+ S G Sbjct: 532 RATRGKAGAKVKDDDTIEHFLTCCDHDSVLFFSDRGVVYSLRTYQIPIGSRTS---RGTP 588 Query: 590 IQLLIDLNHNQDIVTAFVYD--STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE 647 I ++ + + I + D ++ + LV+ +KG E +N R + +S E Sbjct: 589 IVQMLPIPKEEKITSIVPVDEFTSEEYLVMLTKGGNIKKTALEAFSNIR-ANGLIAISLE 647 Query: 648 E--KMKLVVKVTGDHVAVVGENRKLLIF---SIDQIPEMSRG-KGVRLQSYKDG 695 E +++ V + + ++G + I + DQ+ + R +GV+ K G Sbjct: 648 EGDQLRWVRRAKVEDSIIIGSRHGMAIHFRCTHDQLRPLGRATRGVKSMKLKPG 701 >gi|312795448|ref|YP_004028370.1| DNA gyrase subunit A [Burkholderia rhizoxinica HKI 454] gi|312167223|emb|CBW74226.1| DNA gyrase subunit A (EC 5.99.1.3) [Burkholderia rhizoxinica HKI 454] Length = 867 Score = 382 bits (981), Expect = e-103, Method: Compositional matrix adjust. Identities = 224/610 (36%), Positives = 351/610 (57%), Gaps = 65/610 (10%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 +SL + YL YA+S I RA+PD RDG KPVHRR+++AM E+ D+ A+KKSARIV Sbjct: 11 ISLEEEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMHELNNDWNRAYKKSARIV 70 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGD +VY+++VR+AQ F RY L+ GQGNFG++DGD+AAA RYTE R+ ++ Sbjct: 71 GDVIGKYHPHGDSAVYETIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRLAKI 130 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 +L +D++ VDF Y+ +++P V P++ PNLL NG+SGIAVGMAT+IP HN+ E+ Sbjct: 131 GHELLADIDKETVDFEPNYDGSETQPQVLPARIPNLLINGSSGIAVGMATNIPPHNLNEV 190 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 +A L+++P+ SI++L+E + PDFPT GI+ + + + YR GRG +RA+ E Sbjct: 191 VDACQHLLNHPQASIDELIEIVPAPDFPTAGIVY-GVQGVRDGYRTGRGRVVMRAKTHFE 249 Query: 260 EVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318 E+ RG I+V E+PYQV K L+E+IAEL+ K+I + DIRDES + V+ R Sbjct: 250 EIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKIEGISDIRDESDKSGMRVVIELKR 309 Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378 P++++ +++ + ++ F +NM L G+ P+++ L +L+ +L+HRREV+ RR+ + Sbjct: 310 GEVPEVVLNNLYKNTQLQDTFGMNMVALIDGQ-PKLLNLRELLECFLSHRREVVTRRTLY 368 Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV-----------------MVSR- 420 ++ R +L+GL +A NIDE IAII+ P P+ M+SR Sbjct: 369 ELRRARERGHVLEGLAVALANIDEFIAIIKAAPTP-PIAKQALMTRAWDSALVRDMLSRA 427 Query: 421 ---------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453 + L++ Q IL +RL+ L LE+ +I +E Sbjct: 428 QGETPGGRDAFRPDGLAPIFGMQSDGLYKLSDTQAQEILQMRLQRLTGLEQDKITAEYRE 487 Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513 ++A+ + +L ++ IA E+ +K F G R + E++ + T + Sbjct: 488 VMAQIADLLDILAKPERIRTIIADELVAIKAEF------GDPRRSQIELNATELGT--ED 539 Query: 514 MIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565 +I + + V +S+ G+I R+ K A+ K+ D ++ A+T D IL Sbjct: 540 LITPQDMVVTMSHAGYIKSQPLSEYRAQKRGGRGKQAIVMKDDDWIETLFIANTHDYILC 599 Query: 566 LSTDGKAYTL 575 S G+ Y L Sbjct: 600 FSNRGRVYWL 609 >gi|290243052|ref|YP_003494722.1| DNA gyrase, A subunit [Thioalkalivibrio sp. K90mix] gi|288945557|gb|ADC73255.1| DNA gyrase, A subunit [Thioalkalivibrio sp. K90mix] Length = 823 Score = 382 bits (981), Expect = e-103, Method: Compositional matrix adjust. Identities = 211/571 (36%), Positives = 346/571 (60%), Gaps = 34/571 (5%) Query: 26 LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85 + + YA+S I +RA+PD RDG KPVHRRI+++M ++G+ A KKSAR+VG+V+GK Sbjct: 24 MRSSFADYAMSVITDRALPDARDGLKPVHRRILYSMHQLGITHMVAHKKSARVVGDVLGK 83 Query: 86 LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145 HPHGD + YDS VR+AQ + R+PLI GQGNFG+IDGD+AAA RYTE R++++ + Sbjct: 84 YHPHGDSACYDSAVRMAQHWAMRHPLIDGQGNFGSIDGDNAAAMRYTEMRLSKLGTRLFA 143 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 + ++ VDFRD ++ + EP V P +PNLL NG+ GIAVGMATS+P HN++E +A LA Sbjct: 144 DIQKNTVDFRDNFDGTEREPEVLPLTYPNLLVNGSEGIAVGMATSVPPHNLRETADAFLA 203 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265 +DNPEI+ ++ +++ GPDFPTGGI+ + +++ GRG ++R++W VE+ RG Sbjct: 204 WLDNPEITTREIAQHMPGPDFPTGGIL-HDLDGYIQALDTGRGAVKLRSQWTVEDRPRGG 262 Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFPKNRSLDPDL 324 +V+ +IPY V K++L+E+IAEL+ K+I + D+RDES + +RIVL K R + + Sbjct: 263 SRLVIDQIPYAVNKAKLVEQIAELVREKKIEGVADLRDESNKKGIRIVLEIK-REFEAEA 321 Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384 + + ++ +ET N+ L +G+ P + + + + + AHR EV+ RR+ F + Sbjct: 322 IAFQLVTMTQLETSVRYNIMAL-VGQTPMQLGVRDLFEHFRAHRIEVIQRRTQFDLDRAL 380 Query: 385 RRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAILNLRLRSLRK 441 R+ IL+GLL+A +DE IA IR + D+ + ++ + Q AIL+++L+ L Sbjct: 381 DRLHILEGLLMALDRLDETIATIRASADADEARGGLIDLLGIDVTQAQAILDMKLQKLTG 440 Query: 442 LEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV--KEIFSKSTDLGRRRTTF 499 L+ I+ E D L AE + +L ++Q + E+ ++ + + T++ T+ Sbjct: 441 LQIQDIRDEHDRLTAEVADLRDILARSERQVEIMRTELLDLCDQHANERCTEID---TSL 497 Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD--------LSALHFKEGDSL 551 +VS AD +I +E + ++ + +G+++ + + ++ S + E D L Sbjct: 498 SKVSAAD-------LIPEEDVMLIGTQQGYLKRIAAKDMNRQNRGTKGRSIMSVGE-DDL 549 Query: 552 KIALHA-HTTDRILLLSTDG-----KAYTLP 576 HA H+ D ++ L+ G KAY +P Sbjct: 550 VTTFHAGHSHDTLIALTDSGQVHAIKAYDIP 580 >gi|320102792|ref|YP_004178383.1| DNA gyrase subunit A [Isosphaera pallida ATCC 43644] gi|319750074|gb|ADV61834.1| DNA gyrase subunit A [Isosphaera pallida ATCC 43644] Length = 914 Score = 382 bits (981), Expect = e-103, Method: Compositional matrix adjust. Identities = 258/713 (36%), Positives = 377/713 (52%), Gaps = 62/713 (8%) Query: 26 LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85 L+E YL YA+S I RA+PD RDG KP RRI+ AM ++GL G + K A IVGE + + Sbjct: 25 LKESYLTYAMSVIVSRALPDARDGLKPSQRRILAAMLDLGLTPGGSTSKCAGIVGETMKR 84 Query: 86 LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145 HPHGD S+Y +L R+AQ + R+ L++GQGNFG+I G AA RYTEA+++ VA +L Sbjct: 85 YHPHGDNSIYPTLARMAQWWNMRHLLVTGQGNFGSIHGLPPAAMRYTEAKLSPVAAEMLD 144 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 + D VDF+ +Y+E+ EP V P++FPNLL NG+ GIAVGMATSIP HN+ E+C+A +A Sbjct: 145 DIKLDTVDFQPSYDEKHQEPRVLPARFPNLLVNGSGGIAVGMATSIPPHNLGEVCDALIA 204 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265 LIDNP I E L+E + GPDFPTGG+I R I E+Y GRG +RA+ VEE G Sbjct: 205 LIDNPAIDFEDLIEKLPGPDFPTGGVIC-GRMGIREAYLTGRGRIVLRAKHVVEETRDGR 263 Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES--AEDVRIVLFPKNRSLDPD 323 IV TEIPYQ+ K L++K+ +L+ RI + D+ DES + VRIV+ K R+ DP+ Sbjct: 264 TQIVFTEIPYQLMKEPLLKKLGDLVNTDRIKGIADVVDESDRRQPVRIVVKLK-RNEDPN 322 Query: 324 LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAI 383 +++ ++ S ++ F + M L GR P+ + L +LK +L HR V+ RR++F ++ Sbjct: 323 VILNQLYQYSPLQDTFGVIMLALVDGR-PKTLTLRELLKIYLDHRANVIRRRTAFLLRRD 381 Query: 384 DRRVEILKGLLIAYLNIDEIIAIIRNEDKPK----------------------PVMVSRF 421 R +++GLLIA IDEII IIR+ P P + Sbjct: 382 RARAHVVEGLLIALDMIDEIIHIIRSSPNPTEARTRLMGMAVGPDVMRRALNDPEAQATT 441 Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481 LT NQ DAIL +RL+ L LE ++ +E L A + +L + I ++ E Sbjct: 442 GLTRNQADAILAMRLQQLTGLELDKLVAEYRELRAAIADAEDILAREVRVREIIKADLEE 501 Query: 482 VKEIFSKSTDLGRRRTTFC--EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539 +K ++ RRT E+ DK +A+I +E + V I++ G+I+ L + Sbjct: 502 LKRKYADP-----RRTVISDEELGSYDK----EALIREEYMVVTITDGGYIKRLPPSTYR 552 Query: 540 L--------SALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGH 586 +A KEGD L A T D +L + G K Y +P + Sbjct: 553 AQGRGGRGKTAAGTKEGDFLAHMFVALTHDYLLFFTDQGLIHWLKVYDVP---IAPRTAT 609 Query: 587 GEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLK 643 G AI L++L + I + L + + +G S R G L Sbjct: 610 GRAIVNLLELREGERITGVIPVRRFPDNEFLFMATRRGTVKKTPLSAYSRPQRGGIIALG 669 Query: 644 VSSEEKMKLVVKV-TGDHVAVVGENRKLLIFSIDQIPEMSRG----KGVRLQS 691 + +++ V + GDHV + N + F + M R +G+RL+ Sbjct: 670 LEEGDQLIAVARTQPGDHVILSTRNGMAIRFEESDVRPMGRPACGVRGIRLEG 722 >gi|261749234|ref|YP_003256919.1| DNA gyrase A subunit [Blattabacterium sp. (Periplaneta americana) str. BPLAN] gi|261497326|gb|ACX83776.1| DNA gyrase A subunit [Blattabacterium sp. (Periplaneta americana) str. BPLAN] Length = 817 Score = 382 bits (981), Expect = e-103, Method: Compositional matrix adjust. Identities = 251/772 (32%), Positives = 429/772 (55%), Gaps = 54/772 (6%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 E + +++ ++ Y+ Y++S I RA+PD RDG KPVHRR+++ M ++G+ +KK Sbjct: 5 EKLIPINIEDEMKSSYIDYSMSVIVSRALPDARDGLKPVHRRVLYGMYQLGIFSNNPYKK 64 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 SARIVGEV+GK HPHGD SVY+++VR+AQ + RYPLI GQGNFG++D D AA RYTE Sbjct: 65 SARIVGEVLGKYHPHGDISVYETMVRMAQKWTLRYPLIDGQGNFGSLDADPPAAMRYTEV 124 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 RM +++E +L + ++ VD + +++ EP V P++ PNLL NG+SGIAVGMAT+IP H Sbjct: 125 RMKKMSEEMLLDIKKETVDMQLNFDDSIEEPTVLPTRIPNLLINGSSGIAVGMATNIPPH 184 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 N++E +A A I+N +ISIE+++EYI PDFPTGGII E + +++ GRG +RA Sbjct: 185 NLKETIKAIFAYIENDQISIEQIMEYIKAPDFPTGGIIY-GYEGVKKAFYTGRGRIVLRA 243 Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVL 313 + +EE+ +G CI+V EIPYQV K+ +I + EL+ ++ + IRDES + +RIV Sbjct: 244 KVHLEEI-QGRQCIIVDEIPYQVNKAEMITRTVELMREGKMEGIYQIRDESDRNGLRIVY 302 Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373 K + +P +L+ ++F + ++T F +N L G+ P + + +++ ++ HR++V+ Sbjct: 303 LLKQNT-NPHILLNNLFKYTSLQTYFNVNNIALVKGK-PVQLNIKDLIQHFVDHRQDVII 360 Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDKPKPV--MVSRFSLTENQVDA 430 RR+ + ++ R+ L G L ++D++I +I+ ++D + ++ F L+ENQ + Sbjct: 361 RRTKYELKKCQDRIHTLTGFLTILDHLDKMIELIKESKDHHEACNRLIKMFKLSENQSRS 420 Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490 IL++RL++L LE +IK E + L+ +KI L N Q ++ +E+ +I K Sbjct: 421 ILDMRLQNLTSLELKKIKKEYEELV---KKIAYLKNVLIQHSIRMQIIKKELLDIQDKYQ 477 Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHS------VDLSA 542 D +RRT ++ + +IE E + + IS+ G+I+ SL + + Sbjct: 478 D--KRRT---QIDYLGNEVHIEDLIEDEQVVLTISHAGYIKRTSLSEYKRQGRGGIGNRG 532 Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKA-----YTLPAGNLLSGRGHGEAIQLLIDLN 597 +E D K L A +L + GK Y +P G+ +S G AIQ +I L Sbjct: 533 ASARESDFFKHLLIATNHQYLLFFTEKGKCFWLRVYEIPEGSKIS---KGRAIQNMIHLQ 589 Query: 598 HNQDIVTAFV---------YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV---- 644 + D V A++ Y +++V+ KG I++++ + +R K + Sbjct: 590 PD-DKVNAYILTGDLTNKKYVQNHYVMMVTQKG---IIKKTSLENYSRPRKDGINAIVIR 645 Query: 645 SSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRG----KGVRLQSYKDGGISDV 700 + ++ ++ HV + ++ K++ FS ++ R +G+ L +D I + Sbjct: 646 KGDSLLEAILTKGNSHVFIAVKSGKIIRFSEKKVRATGRNSSGVRGINLSISEDTVIG-M 704 Query: 701 ICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752 IC + E + + + + + N + RGG G ++G +S Sbjct: 705 ICVEGQEKGYLLVVSEKGFGKRTNLKDYRITNRGGKGIKTINITQKTGSLIS 756 >gi|209549340|ref|YP_002281257.1| DNA gyrase subunit A [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209535096|gb|ACI55031.1| DNA gyrase, A subunit [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 941 Score = 382 bits (981), Expect = e-103, Method: Compositional matrix adjust. Identities = 241/712 (33%), Positives = 379/712 (53%), Gaps = 63/712 (8%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 ++ +S+ ++ YL YA+S I RA+PD+RDG KPVHRRI++ MSE+G+D+ + K A Sbjct: 16 IEPISIMEEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYGMSELGIDWNKKYVKCA 75 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+ G+V+GK HPHG+ ++YD+L R+AQP+ R PLI GQGNFG++DGD AA RYTE R+ Sbjct: 76 RVTGDVMGKYHPHGNSAIYDALARMAQPWSLRLPLIDGQGNFGSVDGDPPAAERYTECRL 135 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 + A +L +D++ VDFRD Y+ SEPVV P+KFPNLL NG GIAVGMAT+IP HN+ Sbjct: 136 EKAAHSLLDDLDKETVDFRDNYDGTLSEPVVVPAKFPNLLVNGAGGIAVGMATNIPPHNL 195 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ + +ALI++P I + L++ I GPDFPTG I+ R I +Y GRG +R Sbjct: 196 SEVIDGCIALINDPAIELPDLMQIIPGPDFPTGAKIL-GRAGIRSAYETGRGSVIMRGVA 254 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316 +E + I++TEIPYQV K+ +IEK+AEL+ KRI + D+RDES V+ Sbjct: 255 AIEPMRGDREQIIITEIPYQVNKATMIEKMAELVRDKRIEGISDLRDESDRQGYRVVVEL 314 Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376 R + ++++ ++ + ++T F NM L+ G+ Q+ LD +L+ +++ R EV+ RR+ Sbjct: 315 KRDANAEVILNQLYRYTPLQTSFGCNMVALNGGKPEQLTLLD-MLRAFVSFREEVVSRRT 373 Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP----VMVSR------------ 420 F ++ R +L GL IA NIDE+I +IR P+ +M R Sbjct: 374 KFLLRKARDRAHVLVGLAIAVANIDEVIRVIRQAPDPQSAREELMTRRWPAEDVESLIRL 433 Query: 421 -------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467 ++L+E Q AIL LRL L L +I EL+ + E + +L+S Sbjct: 434 IDDPRHRINEDLTYNLSEEQARAILELRLARLTALGRDEIGDELNKIGEEIKDYLDILSS 493 Query: 468 GKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNR 527 + + E+ V++ F RRT E+ + +I +E + V +S+ Sbjct: 494 RVRIQTIVKDELIAVRDEFGTP-----RRT---EIVDGGLEMDDEDLIAREDMVVTVSHL 545 Query: 528 GWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYT 574 G+I R+ + S + ++ D + +T +L S+ G K + Sbjct: 546 GYIKRVPLTTYRAQRRGGKGRSGMTTRDEDFVSRLFVVNTHTPVLFFSSRGIVYKEKVWR 605 Query: 575 LPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD------STCKLLVVSSKGNAFIVEE 628 LP G S G+A+ ++ L + I T ++ +++G + Sbjct: 606 LPIGTPTS---RGKALINMLPLAPGERITTILPLPEDEESWDNLDVMFSTTRGTVRRNKL 662 Query: 629 SEIIANTRKGKTFLKVSSEEKMKLVVKVT--GDHVAVVGENRKLLIFSIDQI 678 S+ + R GK +K+ E L V+ D V + + + FS+D + Sbjct: 663 SDFVQVNRNGKIAMKLEEEGDEILSVETCTESDDVLLTTALGQCIRFSVDDV 714 >gi|256784738|ref|ZP_05523169.1| DNA topoisomerase IV subunit A [Streptomyces lividans TK24] gi|289768625|ref|ZP_06528003.1| DNA topoisomerase IV subunit A [Streptomyces lividans TK24] gi|289698824|gb|EFD66253.1| DNA topoisomerase IV subunit A [Streptomyces lividans TK24] Length = 818 Score = 382 bits (981), Expect = e-103, Method: Compositional matrix adjust. Identities = 217/523 (41%), Positives = 322/523 (61%), Gaps = 15/523 (2%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 EE + + + ++ +L YA S I RA+PD RDG KPVHRRI++ M+EMGL + Sbjct: 16 EERILDIDVVDEMQGSFLEYAYSVIYSRALPDARDGLKPVHRRIVYQMNEMGLRPERGYV 75 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYT 132 K AR+VGEV+GKLHPHGD S+YD+LVR+AQ F R PL+ G GNFG++ + D AA RYT Sbjct: 76 KCARVVGEVMGKLHPHGDASIYDALVRMAQSFSMRVPLVDGHGNFGSLGNDDPPAAMRYT 135 Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192 E RM + A L+ + +DED VDF Y+ ++ EPV P+ FPNLL NG SGIAVGMAT++P Sbjct: 136 ECRMAEAAGLMTESIDEDTVDFAPNYDGQEQEPVALPAAFPNLLVNGASGIAVGMATNMP 195 Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252 HN++E+ AA LI P ++ L++++ GPD PTGG IV I ++Y GRG F++ Sbjct: 196 PHNLREVIAAARHLIRYPNADLDALMKHVPGPDLPTGGRIV-GLPGIRDAYETGRGTFKI 254 Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD--ESAEDVR 310 RA VE V +VVTE+P+ V ++I KI +L+ AK+I + D++D + A +R Sbjct: 255 RATVSVETVTARRKGLVVTELPFAVGPEKVISKIKDLVGAKKIQGIADVKDLTDRAHGLR 314 Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370 +V+ KN P+ ++E ++ L+ ME F +N L G+ P + L +L+ +L HR Sbjct: 315 LVIEIKN-GFVPEAVLEQLYKLTAMEESFGINNVALVDGQ-PLTLGLKELLEVYLDHRFT 372 Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQ 427 V+ RRS FR R+ +++GLL A ++IDE+I +IR N + K ++ RFSL++ Q Sbjct: 373 VVRRRSEFRRSKRRDRLHLVEGLLTALVDIDEVIRLIRSSENSAQAKQRLMERFSLSDVQ 432 Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487 IL+ LR L K + +++SE D L AE E++ +L+S + ++ E+ V + F Sbjct: 433 TQYILDTPLRRLTKYDRIELESEKDRLNAEIEELSRILDSDAELRKLVSAELAAVAKKF- 491 Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI 530 TD RRTT E S A A + + +P V++S+ G + Sbjct: 492 -GTD---RRTTLLESSGAPVAAV-PLQVADDPCRVLLSSTGLL 529 >gi|332830576|gb|EGK03190.1| DNA gyrase, A subunit [Dysgonomonas gadei ATCC BAA-286] Length = 863 Score = 382 bits (980), Expect = e-103, Method: Compositional matrix adjust. Identities = 243/717 (33%), Positives = 410/717 (57%), Gaps = 44/717 (6%) Query: 13 VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72 E+ + +++ ++ Y+ Y++S I RA+PD+RDGFKPVHRRI+ MSE+G Sbjct: 4 TEDRIIKINIEDEMKSAYIDYSMSVIVSRALPDVRDGFKPVHRRILFGMSELGNASNKPH 63 Query: 73 KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132 KKSARIVGEV+GK HPHGD SVY ++VR+AQ + RY L+ GQGN G++DGD AA RYT Sbjct: 64 KKSARIVGEVLGKYHPHGDSSVYFAMVRMAQEWSMRYLLVDGQGNMGSVDGDMPAAMRYT 123 Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192 EAR++++AE +L+ +D++ VDF+ +++ EP V P++ PNLL NG SGIAVGMAT++ Sbjct: 124 EARLSRLAEEMLKDIDKETVDFQLNFDDTLKEPTVLPTRIPNLLINGASGIAVGMATNMA 183 Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252 HN+ E A +A I+N +I L++YI PDFP+GG I + +++++ GRG + Sbjct: 184 PHNMTEAINATIAYIENKDIDTAGLMQYIKAPDFPSGGFIY-GYQGVIDAFETGRGRVVM 242 Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRI 311 R R +E G IV+TEIPY V K+ LI+ IA+L+ KR+ + ++ DES + +RI Sbjct: 243 RGRAEIEMEG-NHEKIVITEIPYLVNKAELIKHIADLVGEKRLEGISNVNDESDRQGMRI 301 Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371 V+ K R + ++++ ++ L+ +++ F +N L GR P+ + L ++ ++ HR +V Sbjct: 302 VVDIK-RDANANVVLNKLYKLTALQSSFSVNNIALVKGR-PKTLNLKEMIGFFVEHRIDV 359 Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQV 428 + RR+ F ++ + R IL+GL+IA NIDE+IAIIR P+ ++ RF+L+E Q Sbjct: 360 VTRRTIFELRKAEERAHILEGLIIASDNIDEVIAIIRASKSPQEAIERLIERFNLSEIQA 419 Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488 AI+ +RLR L LE+ ++++E D + ++ +L + + + I E+ EV++ + Sbjct: 420 RAIVEMRLRQLTGLEQDKLRNEYDEIQKLIAYLNEILINEELRMKVITDELIEVRDKYGD 479 Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDL 540 + RRT E+ A + + + + + IS+ G+I R+ V Sbjct: 480 A-----RRT---EIVYASEELNPEDFYSNDEMIITISHLGYIKRTPLSEFRAQNRGGVGA 531 Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNH 598 ++ D ++ A + +LL + GK Y L ++ G G AIQ L++++ Sbjct: 532 KGSETRDTDFIEHIYPASMHNYMLLFTQKGKCYWLRVFDIPEGTKNSKGRAIQNLLNIDS 591 Query: 599 NQDIVTAFV---------YDSTCKLLVVSSKGNAFIVEESEIIANTR---KGKTFLKVSS 646 + D VTAFV + ++ L+ + +G +++++ + A +R G + + Sbjct: 592 D-DKVTAFVRVRGFSDTEFINSHYLIFCTKEG---VIKKTSLEAYSRPRQNGVNAITIRE 647 Query: 647 EEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVI 701 E+K+ V+ G+ + + N + + F+ + M R GVR + G +VI Sbjct: 648 EDKVIEVLMTDGESEILLANRNGRAIRFNEKDVRVMGRTATGVRGMRLDEDGQDEVI 704 >gi|320160497|ref|YP_004173721.1| DNA gyrase subunit A [Anaerolinea thermophila UNI-1] gi|319994350|dbj|BAJ63121.1| DNA gyrase subunit A [Anaerolinea thermophila UNI-1] Length = 981 Score = 382 bits (980), Expect = e-103, Method: Compositional matrix adjust. Identities = 260/754 (34%), Positives = 415/754 (55%), Gaps = 50/754 (6%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 VK V + +++ YL YA+S I RA+PD RDG KPV RRI++AM +MGL A ++KSA Sbjct: 6 VKRVDIDQEMQQSYLDYAMSVIVARALPDARDGLKPVQRRILYAMHDMGLGPDAGYRKSA 65 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 RIVGEV+GK HPHGD +VY+++ RLAQ F RYPL+ GQGNFG+IDGD AA RYTEAR+ Sbjct: 66 RIVGEVLGKYHPHGDVAVYEAMARLAQDFTMRYPLVDGQGNFGSIDGDPPAAMRYTEARL 125 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 T+ A +L +D + VDF D ++ EP V P+ PNLL NG +GIAVGMAT+IP HN+ Sbjct: 126 TRFAVDLLAQIDRNTVDFADNFDGTLREPTVLPAAIPNLLVNGANGIAVGMATNIPPHNL 185 Query: 197 QEICEAALALIDN----PEISIEKLLEYIIGPDFPTGGIIVESRE--SIVESYRLGRGGF 250 E+ +A ++D EI + L+ +I GPDFPTGGI++++ E ++ +Y G+G Sbjct: 186 CEVVDALAFMLDEWERLDEIGVPDLMRFIKGPDFPTGGILLQNVEDGGLLAAYGSGKGRI 245 Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDV 309 +R + E++GRG +++TE+PYQ K+ LIE+IAEL+ + + D+RDES + + Sbjct: 246 LIRGKVHAEDLGRGRTRLIITELPYQTNKTSLIERIAELVREGVLESISDLRDESDRQGM 305 Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369 RIV+ K + + + + +++ + +++ F + + L G P+++ L L+ +L HR Sbjct: 306 RIVIELK-QGAEVETTIRTLYHRTPLQSTFGIILLALVDGE-PRLLTLKQALRVFLEHRI 363 Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLTEN 426 V+ RRS + + R IL+GL +A N+DE+I +IRN ++ + ++ RF L+E Sbjct: 364 VVVRRRSEYDLARARHRAHILEGLRVALKNLDEVIQLIRNAPDAEQARTRLMKRFKLSEI 423 Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486 Q AIL+++LR L LE +I+ E + A+ + ++SLL S K+ + E+ ++KE + Sbjct: 424 QAQAILDMQLRRLASLERKKIEEEYREVTAQIKALESLLASAKKIRLAVKEELLKMKEQY 483 Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK 546 RRRT V+ + + Q + E + +++ W+ + V +A Sbjct: 484 GD-----RRRTQI--VTLEGETAIHQFLTADE---MAPADKVWVGVMADGRVGRTA---G 530 Query: 547 EGDSLKIALH---AHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQD 601 EG ALH A T ++L + G+A L G L + G + L+ Sbjct: 531 EGLPATPALHCLRASTRAVLILANAQGQASALSVGALPVVERWQDGMPLHKASALSEGDR 590 Query: 602 IVTAFVY---DSTCKLLVVSSKGNAFIVEES--EIIANTRKGKTFLKVSSEEKMKLVVKV 656 +V A D +++ NA + + S E+ + + T +KV+ E+++ + Sbjct: 591 VVLALALEPDDPKTDRYLLTVTRNALVKKSSLEELPGPSAQKFTLVKVNPEDEL-----L 645 Query: 657 TGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWIDSAG 716 TG V G++ LL+ + S + VR G V+ K+ EG +G Sbjct: 646 TG--VVTEGQDEVLLLTAGGMAIRFSESE-VRPMGLVAAG---VLGMKLTEG---DQVSG 696 Query: 717 RSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750 N E D+L + G G + FP G++ Sbjct: 697 LVLNPQEKDIL-FACSDGTTGRIAGADFPLQGRY 729 >gi|167763108|ref|ZP_02435235.1| hypothetical protein BACSTE_01477 [Bacteroides stercoris ATCC 43183] gi|167699448|gb|EDS16027.1| hypothetical protein BACSTE_01477 [Bacteroides stercoris ATCC 43183] Length = 843 Score = 382 bits (980), Expect = e-103, Method: Compositional matrix adjust. Identities = 255/777 (32%), Positives = 414/777 (53%), Gaps = 57/777 (7%) Query: 12 LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71 L ++ + +++ ++ Y+ Y++S I RA+PD+RDGFKPVHRRI+ M +G Sbjct: 2 LEQDRIIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILFGMMGLGNTSDKP 61 Query: 72 FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131 +KKSAR+VGEV+GK HPHGD SVY +LVR+AQP+ RY L+ GQGN+G++DGDSAAA RY Sbjct: 62 YKKSARVVGEVLGKYHPHGDSSVYGALVRMAQPWAMRYMLVDGQGNYGSVDGDSAAAMRY 121 Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191 TE R+ ++ E ++Q +D++ VD + +++ EP V P++ PNLL NG SGIAVGMAT++ Sbjct: 122 TECRLQKIGEEMMQDLDKETVDMQTNFDDSLLEPTVMPTRIPNLLVNGASGIAVGMATNM 181 Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251 P+HN+ E+ +A +A IDN +I IE L+ Y+ PDFPTGG I + E+Y GRG Sbjct: 182 PTHNLSEVIDACVAYIDNNDIDIEDLMTYVKAPDFPTGGYIY-GMSGVREAYMTGRGRVV 240 Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVR 310 +RA+ +E IVVTEIPY V K+ LI+ IA+L K+I + + DES E +R Sbjct: 241 MRAKAEIETSSTHDK-IVVTEIPYGVNKAELIKSIADLANEKKIEGISNANDESDREGMR 299 Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370 IV+ K R + +++ ++ ++ ++T F +N L GR P+++ L ++K ++ HR + Sbjct: 300 IVIDVK-RDANASVVLNKLYKMTLLQTSFGVNNVALVHGR-PRLLNLKDLIKYFVEHRHD 357 Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQ 427 V+ RR+ + ++ R IL+GL+IA NIDE+I IIR P ++ RF LTE Q Sbjct: 358 VVIRRTQYDLRKAKERAHILEGLIIASDNIDEVIKIIRAAKTPNDAISGLMERFELTEIQ 417 Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487 AI+ +RLR L L + Q+ +E + + + ++ +L + + I E+ E+K Sbjct: 418 SRAIVEMRLRQLTGLMQDQLHAEYEEIQKQIAYLEEILVNDELCRKVIKDELIEIK---- 473 Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVD 539 T G R + E+ + + + + + + IS+ G+I R+ V Sbjct: 474 --TKYGDERRS--EIVYSSEEFNPEDFYADDEMIITISHMGYIKRTPLSEFRAQNRGGVG 529 Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLN 597 ++ D ++ A + ++ + GK Y L + G G AIQ L++++ Sbjct: 530 SKGTETRDEDFVEHIYPATMHNTMMFFTQKGKCYWLKVYEIPEGTKNSKGRAIQNLLNID 589 Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG---KTFLKVSSEEKMKLVV 654 + D V A+ L V + + + ++ T+ G KT L+ S + V Sbjct: 590 SD-DAVNAY--------LRVKNLNDQDFINSHYVLFCTKNGVIKKTLLEQYSRPRQNGVN 640 Query: 655 KVT--------------GDH-VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGIS 698 +T GD+ + + N + + F + M R GVR + + G Sbjct: 641 AITIREDDRVIEVRMTNGDNEIIIANRNGRAIRFHESAVRVMGRTATGVRGMTLDEDGQD 700 Query: 699 DV---ICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752 +V IC K E T + + + Y + + RGG G ++GK ++ Sbjct: 701 EVVGMICIKDPETETIMVVSEQGYGKRSDIEDYRKTNRGGKGVKTMNITDKTGKLVT 757 >gi|153823602|ref|ZP_01976269.1| DNA gyrase, subunit A [Vibrio cholerae B33] gi|126518881|gb|EAZ76104.1| DNA gyrase, subunit A [Vibrio cholerae B33] Length = 447 Score = 382 bits (980), Expect = e-103, Method: Compositional matrix adjust. Identities = 191/398 (47%), Positives = 279/398 (70%), Gaps = 4/398 (1%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + V++ L YL YA+S I RA+PD+RDG KPVHRR++ AM+ +G D+ A+KKSA Sbjct: 8 ITPVNIEDELRSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNVLGNDWNKAYKKSA 67 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD++VYD++VR+AQPF RY L+ GQGNFG+IDGDSAAA RYTE RM Sbjct: 68 RVVGDVIGKYHPHGDRAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEVRM 127 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 +++A +L +D++ VD+ Y+ + P V P+K PNLL NG SGIAVGMAT+IP HN+ Sbjct: 128 SKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGASGIAVGMATNIPPHNL 187 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ + LA IDN I+I++L++YI GPDFPT +I R+ I+++Y+ GRG +R++ Sbjct: 188 GEVIDGCLAYIDNEAITIDELMDYIPGPDFPTAALI-SGRKGIIDAYKTGRGKVYMRSKA 246 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFP 315 +E G I+V+EIPYQV K+RLIEKIAEL+ K++ + +RDES +D +RIV+ Sbjct: 247 EIETDKNGKETIIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDGMRIVIEC 306 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 K ++ ++++ +++ + ++T F +NM L G+ P++ L +LK ++ HRREV+ RR Sbjct: 307 KRDAVG-EVVLNNLYANTQLQTTFGINMVALDNGQ-PKLFNLKEMLKCFVDHRREVVTRR 364 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP 413 + F ++ R IL+GL +A NIDEII +IR P Sbjct: 365 TIFELRKARERAHILEGLALALANIDEIIELIRRAATP 402 >gi|321309553|ref|YP_004191882.1| DNA gyrase subunit A [Mycoplasma haemofelis str. Langford 1] gi|319801397|emb|CBY92043.1| DNA gyrase subunit A [Mycoplasma haemofelis str. Langford 1] Length = 843 Score = 382 bits (980), Expect = e-103, Method: Compositional matrix adjust. Identities = 259/696 (37%), Positives = 394/696 (56%), Gaps = 50/696 (7%) Query: 21 SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVG 80 SL +E+ +L YA+S I RA+PDL+DG KPVHRRII++ + L A FKKSA +VG Sbjct: 26 SLSSEVEQSFLDYAMSVITARALPDLKDGLKPVHRRIIYSAYQEKLLNSAKFKKSAALVG 85 Query: 81 EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVA 140 V+G HPHGD S+Y++LVR+AQ F RYPLI GQGNFG+IDGDS AA RYTEAR++++ Sbjct: 86 TVMGSYHPHGDSSIYEALVRMAQDFSLRYPLIEGQGNFGSIDGDSPAAMRYTEARLSKLG 145 Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200 E L G+DE+ VDF D Y++ EPVV P+ PNLL NG++GIAVG+AT+IP HN++E+ Sbjct: 146 EYFLDGIDEECVDFMDNYDQSKKEPVVLPTVVPNLLINGSTGIAVGLATNIPPHNIREVL 205 Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY-RLGRGGFRVRARWCVE 259 A L LI NP S LL+YI GPDFPTGG I R S V Y G G F +R++ VE Sbjct: 206 NAVLDLIKNPNFSELDLLQYITGPDFPTGGEIF--RYSGVRDYFSTGSGKFILRSKIEVE 263 Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR-----IPLLED----IRDESA-EDV 309 E + + +++ EIPY V+K+++IE I +LI + +PLL D IRDES E + Sbjct: 264 EQVKKNL-LIIKEIPYGVKKTKIIEGIVKLIKPSKTGKVLVPLLADNIVEIRDESNLEGI 322 Query: 310 RIVLFPKNRSLDP-DLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368 R+V+ + RS P +++ +++ + ++T + +N+ VL G+ P+ + L +LK +L H+ Sbjct: 323 RLVI--ECRSDVPASVIINNLYKFTQLQTSYSVNLTVLVDGK-PERISLLQLLKLYLEHQ 379 Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQV 428 E+L RR+ F++ + +R+ IL+G L +I E I +I D P+ + +R+SL++ Q+ Sbjct: 380 LEMLRRRTIFQLAVLKKRIHILEGRLKISSDILEAIKLINTSDNPEEDLRARYSLSDEQL 439 Query: 429 DAILNLRLRSLRKLEEYQIKSEL---DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485 D I L + SL+K+ +++ EL +L KE S+LNS + + ++ E+++ Sbjct: 440 DDIFRLTVGSLKKISISKLQEELVTKTDLSIFKE---SILNSDDKLREVFSEKLIELRDK 496 Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--RSLKSHSVDL--- 540 F RR E S A + + + +S+RG++ R L ++ + Sbjct: 497 FGDD----RRTRVNMEASGAIDYC---ELFHFQKTVISLSHRGYLSQRPLSTYKLHKRGG 549 Query: 541 ----SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAG--NLLSGRGHGE-AIQLL 593 A H+K+ D K+ L H D +L S GK Y A NL G+ +L Sbjct: 550 SGKEGAFHYKD-DKPKMFLVCHGKDDVLFFSDSGKVYKKKAYEMNLREGKNKATITYNVL 608 Query: 594 IDLNHNQDIVTAFV-----YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE 648 L+ + IVT Y LL +SKG S + GK + + + Sbjct: 609 PGLSKGEKIVTIIALPEGSYGDNKYLLFATSKGLVKRCSMSLFEKINKNGKVAITLRDGD 668 Query: 649 KMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSR 683 +K V+ + D HV + ++ +++ F +I SR Sbjct: 669 SLKFVITLENDSHVCLASDSGRMVKFLASEIRPSSR 704 >gi|332186141|ref|ZP_08387887.1| DNA gyrase, A subunit [Sphingomonas sp. S17] gi|332013956|gb|EGI56015.1| DNA gyrase, A subunit [Sphingomonas sp. S17] Length = 916 Score = 382 bits (980), Expect = e-103, Method: Compositional matrix adjust. Identities = 267/789 (33%), Positives = 414/789 (52%), Gaps = 84/789 (10%) Query: 6 ISNSNTLVE-ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEM 64 +++ TL E ++ +S+ ++ YL YA+S I RA+PD+RDG KPVHRRI+++ +E Sbjct: 1 MADETTLAEPSDISTISIVDEMKSSYLDYAMSVIVARALPDVRDGLKPVHRRILYSAAES 60 Query: 65 GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124 G G ++KSARIVG+V+GK HPHGD ++YD+L R+AQ + R PLI GQGNFG++D D Sbjct: 61 GFVAGKPYRKSARIVGDVMGKYHPHGDSAIYDALARMAQDWSMRVPLIDGQGNFGSMDPD 120 Query: 125 SAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIA 184 AA RYTEAR+ +VA +L +D+D VDF+ Y+ + EP V P+++PNLL NG GIA Sbjct: 121 PPAAMRYTEARLAKVANSLLDDLDKDTVDFQPNYDGSEREPSVLPAQYPNLLVNGAGGIA 180 Query: 185 VGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244 VGMAT+IP HN+ E+ A LA ++N I++E+L E + PDFPTG +I+ R +Y+ Sbjct: 181 VGMATNIPPHNLGEVVNACLAYMENGAITVEELNEIVPAPDFPTGALIL-GRSGARSAYQ 239 Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304 GRG VR+R +EE+ IV+TEIPYQ K+ L+EKIAE KRI + DIRDE Sbjct: 240 TGRGSIIVRSRHEIEEMRGDRRAIVLTEIPYQQGKNALVEKIAEAAKEKRIEGISDIRDE 299 Query: 305 SA-EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363 S E VRIV+ K R P++++ ++ + +T FP NM + GR P+++ L I++ Sbjct: 300 SNREGVRIVIDLK-RDATPEVVLNQLWRHTPAQTSFPANMLAIRGGR-PELLNLRDIIQA 357 Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR 420 ++ R +V+ RRS F + R IL GL+IA N+DE++ IIR P + +++R Sbjct: 358 FVQFREQVITRRSKFELAKARERAHILLGLVIAVTNLDEVVRIIRGSASPVAAREALLAR 417 Query: 421 -------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLL 455 + L+E QV AIL+LRL L L +I EL L Sbjct: 418 EWPIAEIAPYIRLVEAVESEGFGDTYRLSETQVRAILDLRLHRLTALGRDEIGDELKGLA 477 Query: 456 AEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMI 515 ++ +L + + + + E+ +++ F+ RR+ E++ A + +I Sbjct: 478 DSITELLEILANRVKLYEVMRGELVAIRDQFATP-----RRS---EIAAAADGIDDEDLI 529 Query: 516 EKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567 E+E + V ++ +G+I R+ S + K+ D + T +L S Sbjct: 530 EREDMVVTVTMQGYIKRTPLDAFRAQNRGGKGRSGMATKDEDVVTELFVTSTHTPVLFFS 589 Query: 568 TDGKAY-----TLPAG----------NLLSGRGHGEAIQLLIDLNHNQ-DIVTAFVYDST 611 GK Y LP G NLL GE I ++ L ++ + V +T Sbjct: 590 NHGKVYRYKVWRLPEGGPATRGRPMVNLLP-LAPGEVISTVLPLPEDEAEWGKLHVMFAT 648 Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV-VKVTG--DHVAVVGENR 668 K V + +AF + + +N GK ++ E + +L+ V + G D V + Sbjct: 649 AKGAVRRNSMDAF----TNVPSN---GKIAMRFDDESEDRLIGVALLGAEDDVLLATRCG 701 Query: 669 KLLIFSIDQIPEMSR--GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDL 726 + + F+ D + E GVR + K G +VI + + +Y R Sbjct: 702 RAIRFAADDVREFQSRTSTGVRGIALK--GEDEVISLSVLHRVGTTQEEREAYLR----F 755 Query: 727 LGWLGKRGG 735 W G++ G Sbjct: 756 APWKGEKEG 764 >gi|167841639|ref|ZP_02468323.1| DNA gyrase subunit A [Burkholderia thailandensis MSMB43] Length = 850 Score = 382 bits (980), Expect = e-103, Method: Compositional matrix adjust. Identities = 227/615 (36%), Positives = 347/615 (56%), Gaps = 72/615 (11%) Query: 26 LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85 + + YL YA+S I RA+PD+RDG KPVHRR++ AM E+ D+ +KKSARIVG+VIGK Sbjct: 1 MRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRPYKKSARIVGDVIGK 60 Query: 86 LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145 HPHGD +VYD++VR+AQ F RY L+ GQGNFG++DGD+AAA RYTE RM ++ +L Sbjct: 61 YHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAKIGHELLA 120 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 +D++ VDF Y+ + +P++ PS+ PNLL NG+SGIAVGMAT+IP HN+ E+ +A L Sbjct: 121 DIDKETVDFGPNYDGSEMQPLILPSRIPNLLINGSSGIAVGMATNIPPHNLNEVVDACLY 180 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265 L++NP+ S+++L+E I PDFPT GII + + YR GRG +RA EE+ RG Sbjct: 181 LLNNPQASVDELIEIIPAPDFPTAGIIY-GVAGVRDGYRTGRGRVVMRAATHFEEIDRGQ 239 Query: 266 -WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDL 324 I+V E+PYQV K L+E+IAEL+ K++ + DIRDES + V+ R P++ Sbjct: 240 RMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKRGEVPEV 299 Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384 ++ +++ + ++ F +NM L + P+++ L IL+ +L+HRREVL RR+ + ++ Sbjct: 300 VLNNLYKATQLQDTFGMNMVAL-VDNQPKLLNLREILQCFLSHRREVLTRRTVYELRKAR 358 Query: 385 RRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV-----------------MVSR------- 420 R +L+GL +A NIDE IAII+ P P+ M++R Sbjct: 359 ERGHVLEGLAVALANIDEFIAIIKAAPTP-PIAKQELMAKSWDSSLVRDMLTRAETENAA 417 Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457 + L++ Q IL +RL+ L LE+ +I E +++A+ Sbjct: 418 AGGRDAYRPEGLSPAFGMQGDGLYRLSDTQAQEILQMRLQRLTGLEQDKIIGEYRDVMAQ 477 Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517 + +L ++ I E+ VK F G R + E++ + T + +I Sbjct: 478 IADLLDILARPERITVMIGEELTAVKAEF------GDARRSKIELNATELNT--EDLITP 529 Query: 518 EPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569 + + V +S+ G++ R+ K A KE D ++ A+T D IL S Sbjct: 530 QDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYILCFSNR 589 Query: 570 G-----KAYTLPAGN 579 G K Y +P G+ Sbjct: 590 GRVYWVKVYEVPQGS 604 >gi|239948091|ref|ZP_04699844.1| DNA gyrase, A subunit [Rickettsia endosymbiont of Ixodes scapularis] gi|239922367|gb|EER22391.1| DNA gyrase, A subunit [Rickettsia endosymbiont of Ixodes scapularis] Length = 905 Score = 382 bits (980), Expect = e-103, Method: Compositional matrix adjust. Identities = 251/712 (35%), Positives = 389/712 (54%), Gaps = 63/712 (8%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 N+ V++ ++ YL YA+S I RAIPD+RDG KPVHRRII++M E G ++KS Sbjct: 8 NLVPVNIEDEMKVSYLDYAMSVIVSRAIPDVRDGLKPVHRRIIYSMHEAGNHASKPYRKS 67 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 ARIVGEV+GK HPHGD ++YDSLVR+AQ F R PL+ GQGNFG++DGD+AAA RYTE+R Sbjct: 68 ARIVGEVMGKYHPHGDSAIYDSLVRMAQDFSLRLPLVDGQGNFGSMDGDAAAAMRYTESR 127 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 M +V+ +++ +D++ V F Y+ + EP V P+ FPNLL NG+ GIAVGMAT+IP HN Sbjct: 128 MAKVSHKLVEDIDKETVSFNPNYDGSEEEPSVLPAMFPNLLVNGSGGIAVGMATNIPPHN 187 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 + E+ +A IDN +I I LLE + GPDFPTG +I+ I +Y GRG +R R Sbjct: 188 LGEVIDACCLYIDNNDIEILDLLEVVKGPDFPTGSMIL-GISGIRSAYLTGRGSIIMRGR 246 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314 +E +G I++TEIPY V K+RL+EKIAE++ KRI + D+RDES ++ VRI + Sbjct: 247 AEIENIGNSRQAIIITEIPYMVNKARLVEKIAEMVKEKRIEGISDLRDESNKNGVRIFIE 306 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K + + ++++ I+ + ++T F + M L G +P+VM L ++ +++ R V+ Sbjct: 307 LK-KDVVAEVVLNQIYACTQLQTSFGVIMLALKDG-LPKVMNLKEVIAAFVSFREVVITN 364 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSR----------- 420 R+ + + R IL GL IA NIDEII II+ + + K +++R Sbjct: 365 RTIYLLNKARDRAHILLGLTIAVSNIDEIIRIIKASNDSNAAKQELMARQWEALNILPLV 424 Query: 421 --------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466 S TE Q AIL +RL+ L +E+ + + +L NL E + ++L Sbjct: 425 KLVDDKAMLNEQGKCSFTEVQAKAILEMRLQRLTAMEKNKFEEDLKNLATEITEYLNILG 484 Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526 S + + E+ +VKE F+ R T E D+ + +I+ E + V ++ Sbjct: 485 SRTRLLEILKEELIKVKEEFATP------RLTSIEFGEFDQDI--EDLIQHEEMVVTVTL 536 Query: 527 RGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAG 578 G+I RS K S L ++ D T +L S G+ Y+L Sbjct: 537 GGYIKRVPLSSYRSQKRGGKGRSGLSMRDEDITTQVFVGSTHTPMLFFSNIGQVYSLKLY 596 Query: 579 NL-LSG-RGHGEAIQLLIDLNHNQDIVTAFVYD------STCKLLVVSSKGN---AFIVE 627 L LS +G G I ++ L N+ I + ++ ++KGN + +++ Sbjct: 597 KLPLSNPQGKGRPIVNILPLKENEHITNIMPLPENQDEWNNLNIMFATAKGNIRRSDLLD 656 Query: 628 ESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQI 678 +I +N GK +++ ++K+ V D H+ + + K L F ++ + Sbjct: 657 FKKIQSN---GKIAIRLDEDDKLIDVKPCKEDEHILLATKVGKALRFPVESL 705 >gi|326316784|ref|YP_004234456.1| DNA gyrase subunit A [Acidovorax avenae subsp. avenae ATCC 19860] gi|323373620|gb|ADX45889.1| DNA gyrase, A subunit [Acidovorax avenae subsp. avenae ATCC 19860] Length = 884 Score = 382 bits (980), Expect = e-103, Method: Compositional matrix adjust. Identities = 272/811 (33%), Positives = 422/811 (52%), Gaps = 95/811 (11%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 +SL + YL YA+S I RA+PD RDG KPVHRR++ AM E+ D+ +KKSARIV Sbjct: 11 ISLEEEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHELNNDWNRPYKKSARIV 70 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGD +VYD++VR+AQ F R+ L+ GQGNFG++DGD AAA RYTE R++++ Sbjct: 71 GDVIGKYHPHGDSAVYDTIVRMAQDFSLRHMLVDGQGNFGSVDGDGAAAMRYTEIRLSKI 130 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A +L +D++ VDF Y+ + EP+V PSK PNLL NG++GIAVGMAT+IP HN+ E+ Sbjct: 131 AHEMLADIDKETVDFGPNYDGSEKEPLVLPSKLPNLLVNGSAGIAVGMATNIPPHNLNEV 190 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 +A L ++ +P+ ++++++E I PDFPT GII + E YR GRG +RAR E Sbjct: 191 VDACLHVLRHPDATVDEIMEIIPAPDFPTAGIIY-GINGVKEGYRTGRGKVVMRARCHFE 249 Query: 260 EVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318 ++ RG I+V E+PYQV K L E++AEL+ K+I + I+DES + ++ R Sbjct: 250 DIDRGQRQAIIVDELPYQVNKKTLQERMAELVHEKKIEGISHIQDESDKSGMRLVIELKR 309 Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378 P++++ +++ + ++ F +NM L G+ P++ L ++ +L HRREV+ RR+ F Sbjct: 310 GEVPEVVLNNLYKQTQLQDTFGINMVALVDGQ-PRLCNLRDLIVVFLQHRREVVTRRTVF 368 Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIR------------------------------ 408 ++ R +L+GL +A NIDE I IIR Sbjct: 369 ELRKARERGHVLEGLAVALANIDEFIRIIRESPTPPIAKTELMNRAWDSQLVREMLTRTR 428 Query: 409 ------NEDKPKPVMVSR---------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453 N D +P + R + L+E Q IL +RL+ L LE+ +I +E + Sbjct: 429 ADGGVVNADDYRPEGLEREYGMGQDGLYRLSETQAQEILQMRLQRLTGLEQDKIVAEYKD 488 Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513 ++A E + +L+ ++ I E+ +K F + LG RR T E S D +T + Sbjct: 489 IMAVIEDLLDILSKPERVSVIIGDELTAIKAEFGQHK-LGMRR-TLVEHSAQDLST--ED 544 Query: 514 MIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565 +I + V +S+ G+I R+ K A KE D + A+T D IL Sbjct: 545 LITPTDMVVTLSHTGYIKSQPLSEYRAQKRGGRGKQATATKEDDWIDQLFIANTHDYILC 604 Query: 566 LSTDGKAYTL-----PAGNLLSGRG----------HGEAIQLLIDLNHNQDIVTA--FVY 608 S G+ Y L PAG+ S RG GE I +++ L + A FV+ Sbjct: 605 FSNRGRLYWLKVWEVPAGSRGS-RGRPIVNMFPLQEGEKINVVLPLTGDMRTFPADRFVF 663 Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV--VKVTGDH-VAVVG 665 +T V + + F +N RKG + V+ ++ L+ G H V + Sbjct: 664 MATSMGTVKKTALDEF--------SNPRKGG-IIAVNLDDGDYLIGAALTDGQHDVMLFS 714 Query: 666 ENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTW--IDSAGRSYNRS 722 + K + F + + + R +GVR +DG VI + E T + + Y + Sbjct: 715 DGGKAVRFDENDVRPLGRAARGVRGMMLEDG--QSVIAMLVAEDETQSVLTATENGYGKR 772 Query: 723 ENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753 + + RG G + + R+GK +++ Sbjct: 773 TSIVEYTRHGRGTKGMIAIQQSERNGKVVAA 803 >gi|15618194|ref|NP_224479.1| DNA gyrase subunit A [Chlamydophila pneumoniae CWL029] gi|4376547|gb|AAD18423.1| DNA Gyrase Subunit A [Chlamydophila pneumoniae CWL029] Length = 834 Score = 382 bits (980), Expect = e-103, Method: Compositional matrix adjust. Identities = 224/588 (38%), Positives = 336/588 (57%), Gaps = 30/588 (5%) Query: 21 SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVG 80 +L ++E YL Y++S I RA+PD+RDG KP RR+++AM ++ L GA +K A+I G Sbjct: 12 NLEEEMKESYLRYSMSVIISRALPDIRDGLKPSQRRVLYAMKQLSLSPGAKHRKCAKICG 71 Query: 81 EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVA 140 + G HPHG+ +Y +LVR+AQ + RYPL+ GQGNFG+IDGD AA RYTEAR+T A Sbjct: 72 DTSGDYHPHGESVIYPTLVRMAQNWAMRYPLVDGQGNFGSIDGDPPAAMRYTEARLTHSA 131 Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200 +++ +D+D VD Y+E EPVVFPSKFPNLL NG+SGIAVGMAT+IP HN+ E+ Sbjct: 132 MYLMEDLDKDTVDIVPNYDETKHEPVVFPSKFPNLLCNGSSGIAVGMATNIPPHNLGELI 191 Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEE 260 EA L L+ NP+ S++++L+ + GPDFPTGGII S E I +Y GRG +VRAR VEE Sbjct: 192 EATLLLLANPQASVDEILQVMPGPDFPTGGIICGS-EGIRSAYTTGRGKIKVRARLHVEE 250 Query: 261 -VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKNR 318 + I++TE+PY V KSRLIE+IA L+ K + + D+RDES +D +R+VL K + Sbjct: 251 NEDKHRESIIITEMPYNVNKSRLIEQIANLVNEKTLAGISDVRDESDKDGIRVVLEIK-K 309 Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378 ++++ ++ +D++ F NM L +P+ M + ++ W+ HR+EV+ RR+ + Sbjct: 310 GESSEIIINRLYKFTDVQVTFGANMLALDKN-LPRTMSIHRMISAWIRHRKEVIRRRTRY 368 Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAILNLR 435 + + R +L+G L A +D ++ IR N++ K ++ F TE Q AIL LR Sbjct: 369 ELNKAETRAHVLEGYLKALSCLDALVKTIRESGNKEHAKERIIESFGFTEPQALAILELR 428 Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495 L L LE +I+ E + LL + +L+ + I E++++ K + RR Sbjct: 429 LYQLTGLEAEKIQKEYEELLNKIAYYKQVLSDEGLVKDIIRNELQDL----LKHHKVARR 484 Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK----------SHSVDLSALHF 545 T + E + + IS +++ + H V + Sbjct: 485 TTIEFDADDIRDIEDIIT---NESVIITISGDDYVKRMPVKVFKEQRRGGHGV--TGFDM 539 Query: 546 KEGDS-LKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAI 590 K+G LK A T D +L+ + G+ Y L L G R G+ I Sbjct: 540 KKGAGFLKAVYSAFTKDYLLIFTNFGQCYWLKVWQLPEGERRAKGKPI 587 >gi|167563636|ref|ZP_02356552.1| DNA gyrase subunit A [Burkholderia oklahomensis EO147] Length = 866 Score = 382 bits (980), Expect = e-103, Method: Compositional matrix adjust. Identities = 227/621 (36%), Positives = 349/621 (56%), Gaps = 72/621 (11%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 SL + + YL YA+S I RA+PD+RDG KPVHRR++ AM E+ D+ +KKSARIV Sbjct: 11 TSLEEEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRPYKKSARIV 70 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGD +VYD++VR+AQ F RY L+ GQGNFG++DGD+AAA RYTE RM ++ Sbjct: 71 GDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAKI 130 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 +L +D++ VDF Y+ + +P++ PS+ PNLL NG+SGIAVGMAT+IP HN+ E+ Sbjct: 131 GHELLADIDKETVDFGPNYDGSEMQPLILPSRIPNLLINGSSGIAVGMATNIPPHNLNEV 190 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 +A L L++NP+ S+++L+E I PDFPT GII + + YR GRG +RA E Sbjct: 191 VDACLYLLNNPQASVDELIEIIPAPDFPTAGIIY-GVAGVRDGYRTGRGRVVMRATTHFE 249 Query: 260 EVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318 E+ RG I+V E+PYQV K L+E+IAEL+ K++ + DIRDES + V+ R Sbjct: 250 EIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKR 309 Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378 P++++ +++ + ++ F +NM L + P+++ L IL+ +L+HRREVL RR+ + Sbjct: 310 GEVPEVVLNNLYKATQLQDTFGMNMVAL-VDNQPKLLNLKEILQCFLSHRREVLTRRTVY 368 Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV-----------------MVSR- 420 ++ R +L+GL +A NID+ IAII+ P P+ M++R Sbjct: 369 ELRKARERGHVLEGLAVALANIDDFIAIIKAAPTP-PIAKQELMAKSWDSSLVREMLTRA 427 Query: 421 -----------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451 + L++ Q IL +RL+ L LE+ +I E Sbjct: 428 ETENAAAGGREAYRPEGLSPAFGMQGDGFYRLSDTQAQEILQMRLQRLTGLEQDKIIGEY 487 Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511 +++A+ + +L ++ I E+ VK + G R + E++ + T Sbjct: 488 RDVMAQIADLLDILARPERITVMIGEELNAVK------VEFGDVRRSKIELNATELNT-- 539 Query: 512 QAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRI 563 + +I + + V +S+ G++ R+ K A KE D ++ A+T D I Sbjct: 540 EDLITPQDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYI 599 Query: 564 LLLSTDG-----KAYTLPAGN 579 L S G K Y +P G+ Sbjct: 600 LCFSNRGRVYWVKVYEVPQGS 620 >gi|153954761|ref|YP_001395526.1| DNA topoisomerase IV subunit A [Clostridium kluyveri DSM 555] gi|219855225|ref|YP_002472347.1| hypothetical protein CKR_1882 [Clostridium kluyveri NBRC 12016] gi|146347619|gb|EDK34155.1| GyrA2 [Clostridium kluyveri DSM 555] gi|219568949|dbj|BAH06933.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 953 Score = 382 bits (980), Expect = e-103, Method: Compositional matrix adjust. Identities = 242/695 (34%), Positives = 395/695 (56%), Gaps = 56/695 (8%) Query: 8 NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67 N++ + N+ + + A+ + Y+ YA+ K+RA+PD+RDG KPVHRRII+ + Sbjct: 4 NTSIPEDNNIIKIPIEEAMPDNYMPYAVEVAKDRALPDVRDGLKPVHRRIIYGAYMLKAF 63 Query: 68 FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAA 127 + KSARIVG+++GK HPHGD SVYD++V LAQ F + P+I G GN+G+ DGDSAA Sbjct: 64 PERPYYKSARIVGDILGKYHPHGDTSVYDAMVILAQDFTTKMPIIDGHGNWGSQDGDSAA 123 Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187 A RYTEAR+T +A +++ +++D V+ D Y+ + EP V P+++PNLL NG GIAVG+ Sbjct: 124 AMRYTEARLTPIAMEMVRDIEKDVVNMVDNYSGSEKEPEVLPARYPNLLVNGAFGIAVGL 183 Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247 AT+IP HN++E+ EAA A ID +IS EKL+EYI GPD PTGGII+ R+S++ +Y G Sbjct: 184 ATNIPPHNLKEVIEAACAYIDCEDISTEKLMEYIKGPDLPTGGIII-GRQSLICAYTTGE 242 Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR-IPLLE---DIRD 303 G +RA+ +E++ G IV+TE PY+ K+RL++ I+E+ KR I LE DIRD Sbjct: 243 GKATLRAKTSIEKLDNGRLGIVITEFPYRRSKARLLQTISEMTADKRHIKALEPISDIRD 302 Query: 304 ESAED-VRIVLFPKNRSLDPDL---LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359 ES + +R V+ K +S D +L +++ + +D++ NM L+ G+ P + L Sbjct: 303 ESDRNGIRAVIEFK-KSTDKNLAQKVLKYLLKKTDLQCNIFFNMVALADGK-PVTLGLKD 360 Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV--- 416 ILK ++ ++++++ RR+ ++ R I++G + A +DEII IR+ K Sbjct: 361 ILKHYIKYQKQIIKRRTEKELEGAKVRFHIVEGFIKAIGIMDEIIKTIRSSKSKKDAASN 420 Query: 417 MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476 ++ +F T Q +AIL L L L LE + E LL +K+ +L+S K+ I Sbjct: 421 LMEKFEFTREQSEAILELMLYRLTGLEIVSFEKEHRELLKIIKKLTKILDSEKEILKVIK 480 Query: 477 CEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLK 534 E+ E+ E + + R+T E K +++ +++ E I + IS +I+ SLK Sbjct: 481 KELAEIAEKYGE-----ERKTVIIEEEEEAKIDVKEILVD-EDIVITISKEAFIKRISLK 534 Query: 535 SH---SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEA 589 S+ S ++ + ++EGD K +++ T D I+ + G Y + ++ R GE Sbjct: 535 SYNRSSREVKDIEYREGDFNKYVINSSTKDTIMFFTDKGNMYKIKGMDIPEFKWREKGEK 594 Query: 590 IQLL---IDLNHNQDIVTAFVYDS----------TCKLLVVSSKGNAFIVEESEIIA--- 633 ++ + IDL+ ++IV + D T + ++ NAF+ + ++++A Sbjct: 595 LENIIKGIDLSE-ENIVAVYSIDDFSSPQDFIFFTNMAGIKRTETNAFVTKYTKLMALRL 653 Query: 634 ------------NTRKGKTFLKVSSEEKMKLVVKV 656 N + F+KV ++ +K VKV Sbjct: 654 KKEEELIDVKLVNRNESLNFIKVETKIGLKFTVKV 688 >gi|325954972|ref|YP_004238632.1| DNA gyrase subunit alpha [Weeksella virosa DSM 16922] gi|323437590|gb|ADX68054.1| DNA gyrase, A subunit [Weeksella virosa DSM 16922] Length = 864 Score = 382 bits (980), Expect = e-103, Method: Compositional matrix adjust. Identities = 250/775 (32%), Positives = 430/775 (55%), Gaps = 56/775 (7%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 E + +++ ++ Y+ Y++S I RA+PD+RDG KPVHRR++ M E+G+ A+KK Sbjct: 7 EKLIPINIEEEMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLFGMYELGVFSNRAYKK 66 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 SARIVGEV+GK HPHGD SVYD++VR+AQP+ RY L+ GQGNFG++DGD AA RYTEA Sbjct: 67 SARIVGEVLGKFHPHGDTSVYDTMVRMAQPWSLRYLLVDGQGNFGSVDGDQPAAMRYTEA 126 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 R+ ++++ +L +D++ VDF+ +++ EP V P++ P LL NG SGIAVGMAT++ H Sbjct: 127 RLQKISDELLADIDKETVDFKLNFDDTIYEPTVLPTRIPTLLVNGASGIAVGMATNMAPH 186 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 N+ E+ + +A IDN +ISI++L ++I PDFPTGGII + + +++ GRG +RA Sbjct: 187 NLGEVIDGTVAYIDNRDISIDELSKHITAPDFPTGGIIY-GYDGVKQAFETGRGRVVMRA 245 Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVL 313 + EEV G CI+VTEIPYQV K+ +I K A+LI ++ + +IRDES + +RIV Sbjct: 246 KANFEEV-HGRDCIIVTEIPYQVNKADMIAKTADLIKDGKLDGIAEIRDESDRQGMRIVY 304 Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373 K ++ P++++ ++ + +++ F +N L GR P+ + L +++ ++ HR EV+ Sbjct: 305 VLKMDAI-PNVVLNQLYKFTQLQSSFSINNIALVNGR-PEQLNLKDMIRHFVDHRHEVVV 362 Query: 374 RRSSFRMQAIDRRVEILKGLLI---AYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQ 427 RR+ F ++ R IL+G + ++D I IIR + P + +++ F L+E Q Sbjct: 363 RRTEFELRKAQERAHILEGYMKVIGTQDDLDRAIKIIRESETPEIARESLMTAFDLSEIQ 422 Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487 AIL LRLR+L LE +I++E + ++ E + ++L+ +++ I E+ E+K ++ Sbjct: 423 ARAILELRLRTLTGLEIDKIRAEYEEIMKTIEYLKNILSDEDLRFSIIKEELEEIKRKYA 482 Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR-----SLKSHS---VD 539 RR+ E+ + + +I + + + IS+ G+I+ K S V Sbjct: 483 DE-----RRS---EIDYSGGDLNIEDLIPDDNVVLTISHLGYIKRTPLTEYKKQSRGGVG 534 Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL-----PAGNLLSGRGHGEAIQLLI 594 A ++ D L+ + A +L + GK + L P G+ S G AIQ LI Sbjct: 535 NRAATTRDEDFLEYIVVATNHQYMLFFTEKGKCFWLRVFEIPEGSKTS---KGRAIQNLI 591 Query: 595 DLNHNQDIVTAFV---------YDSTCKLLVVSSKGNAFIVEESEIIANTR---KGKTFL 642 ++ + D V A++ Y + +++V+ G I++++ + A +R G + Sbjct: 592 NIEPD-DKVKAYILTHDLMDEEYVNNNYVIMVTKNG---IIKKTSLEAYSRPRINGINAI 647 Query: 643 KVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSRG----KGVRLQSYKDGGI 697 + ++ + + G + + + K + F +++ M R +G+ L KD + Sbjct: 648 TIREDDTLLEALLTDGKSQIMIATKYGKAIRFEDEKVRPMGRTASGVRGINLGDDKDNEV 707 Query: 698 SDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752 +I E T + + + Y + + RGG G ++GK ++ Sbjct: 708 IGMIVVSDMENETVLVVSEKGYGKRTSIEDYRETNRGGKGVTTLNITEKTGKLIA 762 >gi|320334991|ref|YP_004171702.1| DNA gyrase subunit A [Deinococcus maricopensis DSM 21211] gi|319756280|gb|ADV68037.1| DNA gyrase, A subunit [Deinococcus maricopensis DSM 21211] Length = 818 Score = 382 bits (980), Expect = e-103, Method: Compositional matrix adjust. Identities = 250/770 (32%), Positives = 425/770 (55%), Gaps = 75/770 (9%) Query: 30 YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89 ++ YA++ I +RA+PD+RDG KPVHRRI++AM + GL KSA +VGEV+ K HPH Sbjct: 17 FINYAMNVIVDRALPDVRDGLKPVHRRIMYAMLQEGLFSNQKHAKSAAVVGEVMKKYHPH 76 Query: 90 GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDE 149 GD +YD++VRL Q + RYP++ QGNFG+IDGD AAA RYTEARMT++AE +L +++ Sbjct: 77 GDSPIYDAMVRLGQWWNMRYPMVDPQGNFGSIDGDMAAAMRYTEARMTKLAEELLADLEK 136 Query: 150 DAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDN 209 + VD + Y+E +EP V PS PNLL NG++GIAVGMAT+IP HN+ EI +++ID Sbjct: 137 ETVDLKPNYDETTTEPSVLPSAVPNLLVNGSAGIAVGMATNIPPHNLTEIVNGLISIIDK 196 Query: 210 P---------EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEE 260 P ++S+++L+ ++ GPDFPTGG I SR I ++Y G G +VR + ++E Sbjct: 197 PGRTAEEKAAQVSLDELMVHVQGPDFPTGGRI--SRSGIRDAYATGHAGLKVRGKARIDE 254 Query: 261 VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES--AEDVRIVLFPKNR 318 G I+++EIPYQV K+ LI+ I+ + A +IP + +RDES E VRIV+ K R Sbjct: 255 -KNGRTQIIISEIPYQVNKTNLIQTISAMYKAGKIPDISALRDESDRKEPVRIVVELK-R 312 Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378 P L++ ++ + ++T F + +N+ + P+V+PL ++ +L HR +V+ RR+++ Sbjct: 313 GAIPTLVLNQLYKYTQLQTTFTV-INLSIVNGEPKVLPLLDTMRYFLEHRADVVTRRTAY 371 Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAILNLR 435 ++ R IL+GLL A +IDE+IA+IR + + +++RF LT+ Q AIL++R Sbjct: 372 ELRKAQERAHILEGLLKALDHIDEVIALIRRSQTGAEARDGLMTRFQLTDVQAQAILDMR 431 Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495 L+ L LE +++ E + L+ +++ ++L K W +I E++++++ + R Sbjct: 432 LQRLVGLEREKLQGEYNELMTLIDRLKAILGDEKLLWREIKKELKDIRDRYGDE-----R 486 Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK--------SHSVDLSALHFKE 547 R+T ++ ++ ++ +I E + + ++ G+++ K S +E Sbjct: 487 RSTITQL---EEDISKEDLIAVEDMVITMTRAGYLKRTKLDAYRAQSRGGRGSSGGKLRE 543 Query: 548 GDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGR-GHGEAIQ-LLIDLNHNQ 600 D T D +L + G K Y LP +GR G I+ LL L N+ Sbjct: 544 EDVNTRVFVGSTHDYLLFFTDQGRLFHEKIYDLPE----AGRDAKGTHIKNLLPGLRENE 599 Query: 601 DIVTAFV---YDSTCKLLVVSSKGNAFIVEESEI--IAN-TRKGKTFLKVSSEEKMKLV- 653 + + +D + + +G ++++++I N T G L + ++ + V Sbjct: 600 SVASVLAIKDFDEAGSFVFATKRG---MIKKTQIRDYGNITSAGLIALNLQDDDGLIGVG 656 Query: 654 VKVTGDHVAVVGENRKLLIFSIDQIPEMSRGK----GVRLQSYKDGGISDVICFKICEG- 708 ++ GDH+ + + + + F +++ + R G+RL +DG V+ + G Sbjct: 657 IQRDGDHIVLATSDGQAMRFGANEVRDTGRATQGVIGIRL---RDG--DHVVSMAVVPGD 711 Query: 709 -----LTWIDSAGRSYNRSENDLLGWLGK-RGGVGSLVPKGFPRSGKFLS 752 L I G +D + K RGG+G + ++GK ++ Sbjct: 712 DEDSELLAISECGLGKRTPVSD---YPSKGRGGLGVITLDVTEKTGKLVA 758 >gi|21224180|ref|NP_629959.1| DNA topoisomerase IV subunit A [Streptomyces coelicolor A3(2)] gi|2661689|emb|CAA15793.1| DNA gyrase-like protein [Streptomyces coelicolor A3(2)] Length = 818 Score = 382 bits (980), Expect = e-103, Method: Compositional matrix adjust. Identities = 217/523 (41%), Positives = 322/523 (61%), Gaps = 15/523 (2%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 EE + + + ++ +L YA S I RA+PD RDG KPVHRRI++ M+EMGL + Sbjct: 16 EERILDIDVVDEMQGSFLEYAYSVIYSRALPDARDGLKPVHRRIVYQMNEMGLRPERGYV 75 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYT 132 K AR+VGEV+GKLHPHGD S+YD+LVR+AQ F R PL+ G GNFG++ + D AA RYT Sbjct: 76 KCARVVGEVMGKLHPHGDASIYDALVRMAQSFSMRVPLVDGHGNFGSLGNDDPPAAMRYT 135 Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192 E RM + A L+ + +DED VDF Y+ ++ EPV P+ FPNLL NG SGIAVGMAT++P Sbjct: 136 ECRMAEAAGLMTESIDEDTVDFAPNYDGQEQEPVALPAAFPNLLVNGASGIAVGMATNMP 195 Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252 HN++E+ AA LI P ++ L++++ GPD PTGG IV I ++Y GRG F++ Sbjct: 196 PHNLREVIAAARHLIRYPNADLDALMKHVPGPDLPTGGRIV-GLPGIRDAYETGRGTFKI 254 Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD--ESAEDVR 310 RA VE V +VVTE+P+ V ++I KI +L+ AK+I + D++D + A +R Sbjct: 255 RATVSVETVTARRKGLVVTELPFAVGPEKVISKIKDLVGAKKIQGIADVKDLTDRAHGLR 314 Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370 +V+ KN P+ ++E ++ L+ ME F +N L G+ P + L +L+ +L HR Sbjct: 315 LVIEIKN-GFVPEAVLEQLYKLTAMEESFGINNVALVDGQ-PLTLGLKELLEVYLDHRFT 372 Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQ 427 V+ RRS FR R+ +++GLL A ++IDE+I +IR N + K ++ RFSL++ Q Sbjct: 373 VVRRRSEFRRSKRRDRLHLVEGLLTALVDIDEVIRLIRSSENSAQAKQRLMERFSLSDVQ 432 Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487 IL+ LR L K + +++SE D L AE E++ +L+S + ++ E+ V + F Sbjct: 433 TQYILDTPLRRLTKYDRIELESEKDRLNAEIEELTRILDSDAELRKLVSAELAAVAKKF- 491 Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI 530 TD RRTT E S A A + + +P V++S+ G + Sbjct: 492 -GTD---RRTTLLESSGAPVAAV-PLQVADDPCRVLLSSTGLL 529 >gi|72162530|ref|YP_290187.1| DNA topoisomerase IV subunit A [Thermobifida fusca YX] gi|71916262|gb|AAZ56164.1| DNA topoisomerase IV subunit A [Thermobifida fusca YX] Length = 831 Score = 382 bits (980), Expect = e-103, Method: Compositional matrix adjust. Identities = 204/507 (40%), Positives = 321/507 (63%), Gaps = 14/507 (2%) Query: 30 YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89 +L YA S I +RA+PD RDG KPV RRI++ MSEMGL K AR+VGEV+GKLHPH Sbjct: 32 FLEYAYSVIYQRALPDARDGLKPVQRRILYQMSEMGLRPDRGHVKCARVVGEVMGKLHPH 91 Query: 90 GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA-AAYRYTEARMTQVAELILQGVD 148 GD ++YD+LVRL+QPF R PL+ G GNFG++ GD A AA RYTEAR+T+ A L+++ +D Sbjct: 92 GDSAIYDALVRLSQPFAMRVPLVDGHGNFGSLGGDDAPAAMRYTEARLTRAAMLMVESID 151 Query: 149 EDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208 E+ VDFR Y+ +++EP V P+ FPNLL NG SGIAVGMAT++ HN+ E+ AA L+ Sbjct: 152 ENVVDFRPNYDGQETEPEVLPAAFPNLLVNGASGIAVGMATNMAPHNLGEVIAAARHLLA 211 Query: 209 NPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCI 268 +P+ ++E+L+E+I GPD PTGG I + I ++Y GRG FR+RA +E++ + Sbjct: 212 HPDATLEELMEFIPGPDLPTGGTIT-GLDGIRDAYTKGRGTFRIRATVSIEKLTPRRTGL 270 Query: 269 VVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD--ESAEDVRIVLFPKNRSLDPDLLM 326 VVTE+PY V ++I +I EL+ AK++ + D++D + + +R+V+ KN +P+ ++ Sbjct: 271 VVTELPYNVGPEKVISRIKELVQAKKLQGISDLKDLTDRNQGLRLVIELKN-GFNPEAVL 329 Query: 327 ESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRR 386 E ++ L+ ME F +N NV + P+ + L +L+ ++ HR EV+ RR R + R Sbjct: 330 EELYRLTPMEETFGIN-NVALVDGEPRTLGLRDLLQVYVDHRLEVVRRRCEHRRAKREER 388 Query: 387 VEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAILNLRLRSLRKLE 443 + ++ GLL+A +ID++IA+IR+ D + + ++ F L++ Q IL+ LR L + + Sbjct: 389 LHLVTGLLVALADIDQVIAVIRDSDDSTQARQRLMDTFDLSDTQARYILDTPLRRLTRYD 448 Query: 444 EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVS 503 + +++ E D L AE ++ ++L S K+ ++ E+ V + F+ RRT E + Sbjct: 449 KQELEQERDTLTAEIAELTAILESDKKLRRLVSKELAAVAKEFATP-----RRTVLREST 503 Query: 504 RADKATLQQAMIEKEPITVVISNRGWI 530 + + + +P V++S G I Sbjct: 504 GEVRTSAMPLEVGDDPCHVLLSTSGLI 530 >gi|258647269|ref|ZP_05734738.1| DNA gyrase, A subunit [Prevotella tannerae ATCC 51259] gi|260852920|gb|EEX72789.1| DNA gyrase, A subunit [Prevotella tannerae ATCC 51259] Length = 850 Score = 382 bits (980), Expect = e-103, Method: Compositional matrix adjust. Identities = 244/767 (31%), Positives = 415/767 (54%), Gaps = 47/767 (6%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 ++ + V + ++ Y+ Y++S I RA+PD+RDGFKPV RRI++AM +G A+ Sbjct: 4 QDRIIKVDIEKEMKTSYIDYSMSVIVSRALPDVRDGFKPVQRRILYAMMNIGNTHDKAYM 63 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSAR VGEV+GK HPHGD S+Y +L R+AQ + RYPL+ GQGNFG+IDGDS AA RYTE Sbjct: 64 KSARTVGEVLGKYHPHGDSSIYGALTRMAQDWNLRYPLVDGQGNFGSIDGDSPAAMRYTE 123 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 +RM+ + E ++ +D++ VD ++ ++++ EP V P++ PN L NG +GIAVGMAT++P+ Sbjct: 124 SRMSLMGETMMLDLDKETVDMQNNFDDKLKEPTVLPTRIPNFLVNGATGIAVGMATNVPT 183 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E+ + +A IDNPEI +E L+E+I PDFPTG I+ + + +Y G G +R Sbjct: 184 HNLSEVIDGCVAYIDNPEIDVEGLMEHIKAPDFPTGAFIM-GLQGVRSAYETGHGRIILR 242 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312 A+ +E G IVV EIPY V K+ LI+ IA L+ KRI + D+ DES E +RIV Sbjct: 243 AKTEIEN-GPQHDTIVVNEIPYGVNKAELIKDIARLVNEKRIEGISDVNDESDREGMRIV 301 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 + K R + ++L+ +F ++ +++ F +N L GR P+V+ L ++ ++ HR EV+ Sbjct: 302 IEVK-RDANANVLLNKLFKMTALQSSFAVNCVGLVHGR-PKVLSLKDCIRTFVDHRHEVV 359 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVD 429 RR+ + ++ R IL+GL+IA NIDE++ +IR P + + RF L + Q Sbjct: 360 IRRTKYDLRKAQERAHILEGLIIASDNIDEVVRLIRASKTPAEAIEALKKRFELDDIQAK 419 Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489 AI+++RL L +++ ++ E + L + + + +L + + E+ EVKE + Sbjct: 420 AIVDMRLAQLTNIQQDKLHQEYEELERKIDYYNRILTDDELCRQVMKDELNEVKEKYGDV 479 Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLS 541 RRT E+ + + + + + + IS+ G+I R+ V Sbjct: 480 -----RRT---EIKLSAEEFNPEDFYADDEVIITISHLGYIKRTPLAEFRAQGRGGVGSR 531 Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHN 599 ++ D ++ A + +L + G+ Y L L G G AIQ ++++ + Sbjct: 532 GGTTRDADFIEYIYPATMHNTMLFFTAKGRCYWLKVYELPEGAKNAKGRAIQNMLNIEAD 591 Query: 600 QDIVTAFVY---------DSTCKLLVVSSKGNAFIVEESEIIANTR---KGKTFLKVSSE 647 D V AF+Y + + ++ +++G I++++ + +R G + + E Sbjct: 592 -DSVNAFLYIKKLNDPEFNKSHYVVFCTAEG---IIKKTCLEEYSRPRTNGVKAITIREE 647 Query: 648 EKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSR----GKGVRLQSYKDGGISDVIC 702 +++ VV G D + + N + + F+ D + M R +G+RL + ++C Sbjct: 648 DRVVSVVLTNGQDELVIANRNGRAIRFNEDAVRTMGRVSTGVRGIRLDEDGEDQAVGMVC 707 Query: 703 FKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGK 749 E T + + + + + RGG G + ++GK Sbjct: 708 INDPEKETIMVVSDQGFGKRSAIEDYRKTNRGGKGVKTLQLTDKTGK 754 >gi|291531941|emb|CBK97526.1| DNA gyrase subunit A [Eubacterium siraeum 70/3] Length = 878 Score = 381 bits (979), Expect = e-103, Method: Compositional matrix adjust. Identities = 230/633 (36%), Positives = 353/633 (55%), Gaps = 62/633 (9%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 E + V + + E +L Y+++ + RA+PD+RDG KPVHRRII+ M+E ++K Sbjct: 13 EKLIQVDIEKEMRESFLQYSMAVLVSRALPDVRDGMKPVHRRIIYTMNEADNTSSKPYRK 72 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 A VGEV+GK HPHGD SVYD+LVRLAQ F RYPLI G GNFG++DGD AAYRYTEA Sbjct: 73 CAYTVGEVLGKYHPHGDASVYDALVRLAQDFSMRYPLIDGHGNFGSVDGDPPAAYRYTEA 132 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 RM ++A +L+ + +D +D+ Y+++ EP V P KFPNLL NG+ GIAVGMAT+IP H Sbjct: 133 RMAKIASELLKDIKKDTIDWGKNYDDKLDEPTVLPVKFPNLLVNGSVGIAVGMATNIPPH 192 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 N+ E+C+A +A +DNPE IE++L+YI GPDFPTGGII+ I +Y GRG +R Sbjct: 193 NLNEVCDAIVARMDNPECGIEEILQYIKGPDFPTGGIIM-GYSGIRSAYYTGRGKITLRG 251 Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314 + + E G S I+VTEIPY V KS+L+E +L+ KRI + ++RDES +D +++ Sbjct: 252 KAEIVEEGNHSR-IIVTEIPYMVNKSKLLETTGQLMRDKRIEGISNLRDESDKDGMRIVY 310 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 R ++ +++ ++ + ++ + M L G P+ + L IL ++A +++++ R Sbjct: 311 ELKRDVNAQVVLNKLYSFTQLQDTVGVIMIALVNGE-PKQLTLLEILDNYIAFQKQIITR 369 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRF---------- 421 R++F ++ R IL+G L+A NIDE+I+I+R+ + K ++ RF Sbjct: 370 RTAFDLKKARERAHILQGFLLAIDNIDEVISILRSSKSVQEGKERLMERFKEDDLAKLLQ 429 Query: 422 ----------------SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLL 465 L+E Q DAI+ +RL L LE ++ SEL ++ + +L Sbjct: 430 RAMGENYKDVHFEHEIGLSEEQADAIVQMRLGQLTGLERDKVISELAEIMEKINDFLDIL 489 Query: 466 NSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVIS 525 +S ++ I EI +KE + RRT +S + +I +E + + Sbjct: 490 SSDERVKEIIKEEITAIKEKYGDE-----RRTAIEPIS---GEVDIEDLIPEEECVLTYT 541 Query: 526 NRGWIRSLKSHSVD-----------LSALHFKEGDSLKIALHAHTTDRILLLSTDG---- 570 N G+I K VD +S + +E D ++ + T D IL ++ G Sbjct: 542 NIGYI---KRQPVDVYNLQKRGGKGVSGMKQREEDFVEDMFISSTHDNILFITNYGNMYK 598 Query: 571 -KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602 K Y +P G S + G I L+ L+ + I Sbjct: 599 LKCYEVPEG---SKQSRGTNIVNLLQLDEGERI 628 >gi|312193903|ref|YP_004013964.1| DNA gyrase, A subunit [Frankia sp. EuI1c] gi|311225239|gb|ADP78094.1| DNA gyrase, A subunit [Frankia sp. EuI1c] Length = 830 Score = 381 bits (979), Expect = e-103, Method: Compositional matrix adjust. Identities = 252/773 (32%), Positives = 417/773 (53%), Gaps = 53/773 (6%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 + ++ + + ++ YL YA+S I RA+P++RDG KPVHRR+++AM + G + K Sbjct: 10 DRIEPIGIEVEMQRSYLDYAMSVIVGRALPEVRDGLKPVHRRVLYAMYDGGYRPDRGYFK 69 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 +RIVG+V+G HPHGD S+YD++VRLAQP+ RYPL+ G GNFG+ D AA RYTEA Sbjct: 70 CSRIVGDVMGNYHPHGDTSIYDTVVRLAQPWSLRYPLVDGNGNFGSPGNDPPAAMRYTEA 129 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 RM +A +L+ +D D VDF Y+ EP+V PS+FPNLL NG GIAVGMAT+IP H Sbjct: 130 RMAALAMEMLRDIDSDTVDFAPNYDGRSQEPLVLPSRFPNLLVNGAGGIAVGMATNIPPH 189 Query: 195 NVQEICEAALALIDNPEISIEKLLEYII----GPDFPTGGIIVESRESIVESYRLGRGGF 250 N++E+ ++NP+ + E+LLE ++ GPDFPT G+IV R+ I ++YR GRG Sbjct: 190 NLREVAAGVQWALNNPDATDEELLEALLGIIKGPDFPTHGMIV-GRQGIEDAYRTGRGSI 248 Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV- 309 R+RA VEE +G +VVTE+PYQV L EKIAEL+ RI + D+RDE++ + Sbjct: 249 RMRAVVNVEE-NKGRTQLVVTELPYQVNPDNLAEKIAELVRDNRISGISDVRDETSARIG 307 Query: 310 -RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368 R+V+ K R +++ +++ + ++ F NM + G VP+ + LD +++ ++ H+ Sbjct: 308 QRLVIDLK-RDAVAKVVLNNLYKHTQLQDTFGANMLAIVDG-VPRTLRLDQMIRYYVEHQ 365 Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLTE 425 +V+ RR+ ++++ R+ +L+GLLIA ++D++IA+IRN D + +++R+SL+E Sbjct: 366 VDVIVRRTRYQLRKAQERLHVLEGLLIALDHLDDVIALIRNAESADAARGQLMTRYSLSE 425 Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485 Q AIL+++LR L LE +I E L A+ +++++L S ++Q I E++EV + Sbjct: 426 IQATAILDMQLRRLAALERQRIIDEAAELRAKVTELEAILASPQRQREIIGEELKEVVDK 485 Query: 486 FSKSTDLGRRRTTFC----EVSRADKATLQQAMIEKEPITVVISNRGW--------IRSL 533 F RRT E+S D +I +E + V ++ G+ RS Sbjct: 486 FGDE-----RRTRIVPFEGEMSIED-------LIAQEDVVVTVTRGGYAKRTKTDLYRSQ 533 Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQ 591 K + +E D ++ T +L + G+ Y A L + G+ + Sbjct: 534 KRGGKGVQGAALREDDIVEHFFVTTTHHYLLFFTNKGRVYRAKAHELPEQARSAKGQHVA 593 Query: 592 LLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE 648 ++ ++ I Y + L++ + +G ++ +N G + + ++ Sbjct: 594 NILAFGQDERIAEVMAIRDYAAAPYLVLATKRGLCKKSALTDFDSNRAGGLVAINLREDD 653 Query: 649 KMKLVVKVTG--DHVAVVGENRKLLIFSID--QIPEMSRGK----GVRLQSYKDGGISDV 700 ++ + ++ G D + +V N + + F D Q+ M R G+R + + +V Sbjct: 654 EV-IGARLVGADDDLLLVSRNAQSIRFHADDEQLRPMGRATAGVIGMRFDADDELLSIEV 712 Query: 701 ICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753 I L S G + N+ L RGG G L + P G + + Sbjct: 713 IKPDSTASLLVATSGGFAKRTHLNEY--PLQGRGGKGVLTARIVPSRGNLVGA 763 >gi|67459447|ref|YP_247071.1| DNA gyrase subunit A [Rickettsia felis URRWXCal2] gi|75536139|sp|Q4UKM1|GYRA_RICFE RecName: Full=DNA gyrase subunit A gi|67004980|gb|AAY61906.1| DNA gyrase subunit A [Rickettsia felis URRWXCal2] Length = 906 Score = 381 bits (979), Expect = e-103, Method: Compositional matrix adjust. Identities = 249/712 (34%), Positives = 390/712 (54%), Gaps = 63/712 (8%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 N+ V++ ++ YL YA+S I RAIPD+RDG KPVHRRII++M E G ++KS Sbjct: 8 NLVPVNIEDEMKVSYLDYAMSVIVSRAIPDVRDGLKPVHRRIIYSMYEAGNHASKPYRKS 67 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 ARIVG+V+GK HPHGD ++YDSLVR+AQ F R PL+ GQGNFG++DGD+AAA RYTE+R Sbjct: 68 ARIVGDVMGKYHPHGDSAIYDSLVRMAQDFSLRLPLVDGQGNFGSMDGDAAAAMRYTESR 127 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 M +V+ +++ +D++ V F Y+ + EP V P+ FPNLL NG+ GIAVGMAT+IP HN Sbjct: 128 MAKVSHKLVEDIDKETVSFNPNYDGSEEEPSVLPAMFPNLLVNGSGGIAVGMATNIPPHN 187 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 + E+ +A IDN +I I LLE + GPDFPTG +I+ I +Y GRG +R R Sbjct: 188 LGEVIDACCLYIDNNDIEILDLLEVVKGPDFPTGSMIL-GISGIRSAYLTGRGSIIMRGR 246 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314 +E +G I++TEIPY V K+RL+EKIAE++ KRI + D+RDES ++ VRI + Sbjct: 247 AEIENIGNSRQAIIITEIPYMVNKARLVEKIAEMVKEKRIEGISDLRDESNKNGVRIFIE 306 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K + + ++++ I+ + ++T F + M L G +P+VM L ++ +++ R V+ Sbjct: 307 LK-KDVVVEVVLNQIYACTQLQTSFGVIMLALKDG-LPKVMNLKEVIAAFVSFREVVITN 364 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----------- 420 R+ + + R IL GL IA NIDEII II+ + P K +++R Sbjct: 365 RTIYLLNKARDRAHILLGLTIAVSNIDEIIRIIKASNNPNAAKQELMARSWDALNILPLV 424 Query: 421 --------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466 S TE Q AIL +RL+ L +E+ +++ +L NL E + ++L Sbjct: 425 KLVDDKAMLNEQGKCSFTEVQAKAILEMRLQRLTAMEKNKLEEDLKNLATEITEYLNILG 484 Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526 S + + E+ +VKE F+ R T E D+ + +I++E + V ++ Sbjct: 485 SRTRLLEILKEELIKVKEEFATP------RLTSIEFGEFDQDI--EDLIQREEMVVTVTL 536 Query: 527 RGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAG 578 G+I R+ K S L ++ D T +L S G+ Y+L Sbjct: 537 GGYIKRVPLSSYRAQKRGGKGRSGLSMRDEDITTQVFVGSTHTPMLFFSNIGQVYSLKLY 596 Query: 579 NL-LSG-RGHGEAIQLLIDLNHNQDIVTAFVYD------STCKLLVVSSKGN---AFIVE 627 L LS +G G + ++ L N+ I ++ ++KGN + +++ Sbjct: 597 KLPLSNPQGKGRPMVNILPLKENEHITNIMPLPENQDEWDNLNIMFATAKGNIRRSDLLD 656 Query: 628 ESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQI 678 +I +N GK +++ ++K+ V D H+ + + K L F ++ + Sbjct: 657 FKKIQSN---GKIAIRLDEDDKLIDVKPCKEDEHILLATKAGKALRFPVESL 705 >gi|5817862|gb|AAD52968.1|AF167102_2 DNA gyrase alpha subunit [Acholeplasma laidlawii] Length = 824 Score = 381 bits (979), Expect = e-103, Method: Compositional matrix adjust. Identities = 205/590 (34%), Positives = 348/590 (58%), Gaps = 28/590 (4%) Query: 6 ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65 +S + + + +K V++ ++ +L YA+S I RA+P+ +DG KPV RRI++ M E Sbjct: 1 MSENTDKLHDKIKEVNITSEMKTSFLNYAMSVIVSRALPNAKDGLKPVQRRILYGMHENN 60 Query: 66 LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125 + A KKSARIVG+V+GK HPHGD S+YD++VR+AQPF R PL+ G GNFG++DGD Sbjct: 61 MYANTAHKKSARIVGDVMGKYHPHGDSSIYDAMVRMAQPFSYRKPLVDGHGNFGSVDGDG 120 Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185 AAA RYTEAR++++A +++ +D++ V+F D Y+ + EP V PS++PNLL NG++GIAV Sbjct: 121 AAAMRYTEARLSKIAGEMVRDIDKNTVNFVDNYDGSEREPQVLPSRYPNLLVNGSTGIAV 180 Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245 GMAT+IP HN+ E+ +A A +DNP+I++ +L++Y+ GPDFPTGG I+ + ++Y Sbjct: 181 GMATNIPPHNLGEVIDAIFAYLDNPDITVLELMQYMKGPDFPTGGQIL-GITGLRQAYET 239 Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305 G+G VRA+ + E + +++TEIPYQV K+ LIE+IAE++ K I + D+RDES Sbjct: 240 GKGIIAVRAQHEIVET-KNRTELIITEIPYQVNKTTLIERIAEVVKNKIIEGISDLRDES 298 Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365 ++ + +P + + +++ + ++T F +NM L G+ P+++ L L ++ Sbjct: 299 NRKGMRIVIELRKDTNPSVTLNNLYKHTQLQTSFGINMIALVDGQ-PRLLSLKDALTHYI 357 Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFS 422 AH+ E++ RR+ F ++ + R+ IL+ L+ A ++D +I II++ P+ +++ + Sbjct: 358 AHQIEIITRRTQFDLEKAEARMHILEALVKALNDVDNVIKIIKDAKHPEDARHNLIATYD 417 Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482 TE Q +I ++L+ L LE +I E DNL + + +L + I E++++ Sbjct: 418 FTEIQARSIFTMQLQRLTGLEIDKIHEEADNLAHKITEYKQILGDEDLKIEIIKSELQDI 477 Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATL-QQAMIEKEPITVVISNRGWIRSL-------- 533 K+ + EV+ + + + +I E V ++N +I+ + Sbjct: 478 KDKYDDP--------RMSEVNLYEDLDIDNEDLIPVEDTVVTVTNNPYIKRMNLDEYKLQ 529 Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAG 578 V +S + + D ++ T D L + G K YTLP+G Sbjct: 530 NRGGVGMSGVKLHDDDFVEHIAMTSTHDFHLFFTNLGRVFKLKGYTLPSG 579 >gi|154492132|ref|ZP_02031758.1| hypothetical protein PARMER_01763 [Parabacteroides merdae ATCC 43184] gi|154087357|gb|EDN86402.1| hypothetical protein PARMER_01763 [Parabacteroides merdae ATCC 43184] Length = 869 Score = 381 bits (979), Expect = e-103, Method: Compositional matrix adjust. Identities = 246/766 (32%), Positives = 423/766 (55%), Gaps = 49/766 (6%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 +++ ++ Y+ Y++S I RA+PD+RDGFKPVHRRI+ M+E+G +KKSARIV Sbjct: 10 INIEEEMKSAYIDYSMSVIVSRALPDVRDGFKPVHRRILFGMNELGNTSDKPYKKSARIV 69 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 GEV+GK HPHGD SVY ++VR+AQ + RY L+ GQGNFG++DGDS AA RYTEAR++++ Sbjct: 70 GEVLGKYHPHGDSSVYFAMVRMAQTWSMRYTLVDGQGNFGSVDGDSPAAMRYTEARLSKL 129 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 AE +L+ +D+D VDF+ +++ EP V P++ PNLL NG SGIAVGMAT++P+HN+ E+ Sbjct: 130 AEEMLRDIDKDTVDFQLNFDDTLKEPTVLPTRIPNLLVNGASGIAVGMATNMPTHNLSEV 189 Query: 200 CEAALALIDN-PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258 + +A ID E+ + L++YI PDFPTG I + +++ G+G +R + + Sbjct: 190 LDGCMAYIDTRGEMEVADLMQYIKAPDFPTGATIY-GYAGVKDAFETGKGRIVLRGKAEI 248 Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLFPKN 317 E I+++EIPY V K+ LI+ IA+L+ KRI + ++ DES + +RIV+ K Sbjct: 249 -ETENNHEKIIISEIPYGVNKAELIKYIADLVNEKRIDGISNVNDESDRQGMRIVVDVK- 306 Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377 R + +++ ++ ++ +++ F +N L GR P+++ L ++K ++ HR EV+ RR+ Sbjct: 307 RDANSSVVLNKLYKMTALQSSFSVNNIALVNGR-PKLLNLKDLIKAFVDHRHEVVIRRTK 365 Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVDAILNL 434 + ++ + R IL+GL+IA NIDE+IAII++ P ++ RFSL++ Q AI+ + Sbjct: 366 YDLKKAEERAHILEGLIIASDNIDEVIAIIKSSKSPAEAIERLMERFSLSDIQSRAIVEM 425 Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGR 494 RLR L LE+ ++++E + + + +L + I E++E+K+ + G Sbjct: 426 RLRQLTGLEQDKLRAEYEEIEKLIAYLKEILENDDLCMKVIKDELQEIKDKY------GD 479 Query: 495 RRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFK 546 R T ++ A + + + + + IS+ G+I R+ V + Sbjct: 480 ERKT--DIVYASEELNPEDFYADDEMIITISHMGYIKRTPLSEFRAQGRGGVGAKGSETR 537 Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQDIVT 604 + D ++ A +L+ + GK Y L + G G AIQ L+++ + D V Sbjct: 538 DEDFVEYIYPASMHATLLIFTAKGKCYWLKVFEIPEGAKNSKGRAIQNLLNIEPD-DKVN 596 Query: 605 AFV----------YDSTCKLLVVSSKGNAFIVEESEIIANTR---KGKTFLKVSSEEKMK 651 AF+ + ++ LL + KG +++++ + A +R G + + ++ + Sbjct: 597 AFIRVKKLTTDTEFINSHYLLFCTKKG---VIKKTLLEAYSRPRQNGVNAITLREDDGLI 653 Query: 652 LVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDV---ICFKIC 706 V G++ V + N + + F + + M R GVR + D +V +C K Sbjct: 654 EVCMTNGNNEVLIANRNGRAIRFHENAVRVMGRTASGVRGMTLDDDSNDEVVGMVCIKDK 713 Query: 707 EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752 E T + + + Y + N + RGG G ++GK ++ Sbjct: 714 EKETVLVVSEQGYGKRSNIEDYRITNRGGKGVKTINITEKTGKLVA 759 >gi|330815890|ref|YP_004359595.1| GyrA protein [Burkholderia gladioli BSR3] gi|327368283|gb|AEA59639.1| GyrA protein [Burkholderia gladioli BSR3] Length = 871 Score = 381 bits (979), Expect = e-103, Method: Compositional matrix adjust. Identities = 226/620 (36%), Positives = 348/620 (56%), Gaps = 70/620 (11%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 +SL + YL YA+S I RA+PD+RDG KPVHRR++ AM E+ D+ A+KKSARIV Sbjct: 11 ISLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRAYKKSARIV 70 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGD +VYD++VR+AQ F RY L+ GQGNFG++DGD+AAA RYTE RM ++ Sbjct: 71 GDVIGKYHPHGDSAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAKI 130 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 +L +D++ VDF Y+ +SEP++ P++ PNLL NG+SGIAVGMAT+IP HN+ E+ Sbjct: 131 GHELLVDIDKETVDFGPNYDGSESEPLILPARIPNLLINGSSGIAVGMATNIPPHNLSEV 190 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 +A L+ NP+ SI++L+E I PDFPT GII + + YR GRG +RA E Sbjct: 191 VDACHHLLANPQASIDELIEIIPAPDFPTAGIIY-GVAGVRDGYRTGRGRVVMRATTHFE 249 Query: 260 EVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318 E+ RG ++V E+PYQV K L+E+IAEL+ K++ + DIRDES + V+ R Sbjct: 250 EIDRGQRMAVIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKR 309 Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378 P++++ +++ + ++ F +NM L G+ P+++ L +L+ +LAHRREVL RR+ + Sbjct: 310 GEVPEVVLNNLYKSTQLQDTFGMNMVALVDGQ-PKLLNLKEMLECFLAHRREVLTRRTIY 368 Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP----KPVMV---------------- 418 ++ R +L+GL +A NID+ I +I+ P + +M Sbjct: 369 ELRKARERGHVLEGLAVALANIDDFIELIKAAPTPPIARQELMARSWDSSLVREMLARAE 428 Query: 419 --------------------------SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELD 452 +++L+E Q IL +RL+ L LE+ +I E Sbjct: 429 AENAAAGGREAYRPEGLNPAFGMQADGKYNLSETQAQEILQMRLQRLTGLEQDKIIGEYR 488 Query: 453 NLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ 512 ++A+ + +L ++ I E+ VK ++ G R + E++ + T + Sbjct: 489 EVMAQIADLLDILARPERITTIIGEELTAVK------SEFGDARRSRIELNATELNT--E 540 Query: 513 AMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRIL 564 +I + + V +S+ G++ R+ K A KE D ++ A+T D IL Sbjct: 541 DLITPQDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYIL 600 Query: 565 LLSTDG-----KAYTLPAGN 579 S G K Y +P G+ Sbjct: 601 CFSNRGRVYWVKVYEVPQGS 620 >gi|239928492|ref|ZP_04685445.1| DNA topoisomerase IV subunit A [Streptomyces ghanaensis ATCC 14672] gi|291436817|ref|ZP_06576207.1| DNA topoisomerase IV subunit A [Streptomyces ghanaensis ATCC 14672] gi|291339712|gb|EFE66668.1| DNA topoisomerase IV subunit A [Streptomyces ghanaensis ATCC 14672] Length = 817 Score = 381 bits (979), Expect = e-103, Method: Compositional matrix adjust. Identities = 260/772 (33%), Positives = 406/772 (52%), Gaps = 70/772 (9%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 EE + + + ++ +L YA S I RA+PD RDG KPVHRRI++ M+EMGL + Sbjct: 16 EEKILDIDVVDEMQGSFLEYAYSVIYSRALPDARDGLKPVHRRIVYQMNEMGLRPERGYV 75 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYT 132 K AR+VGEV+GKLHPHGD S+YD+LVR+AQPF R PL+ G GNFG++ + D AA RYT Sbjct: 76 KCARVVGEVMGKLHPHGDASIYDALVRMAQPFSMRVPLVDGHGNFGSLGNDDPPAAMRYT 135 Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192 E RM + L+ + +DED VDF Y+ ++ EPV P+ FPNLL NG SGIAVGMAT++P Sbjct: 136 ECRMAEATSLMTESIDEDTVDFAPNYDGQEREPVALPAAFPNLLVNGASGIAVGMATNMP 195 Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252 HN++E+ AA LI P ++ L++++ GPD PTGG IV + ++YR GRG F++ Sbjct: 196 PHNLREVVAAARHLIRYPNADLDALMKHVPGPDLPTGGRIV-GLSGVRDAYRTGRGTFKI 254 Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD--ESAEDVR 310 RA VEEV +VVTE+P+ V ++I KI +L+ +K++ + D++D + +R Sbjct: 255 RATVTVEEVTARRKGLVVTELPFTVGPEKVIAKIKDLVGSKKLQGIADVKDLTDREHGLR 314 Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370 +V+ KN P+ ++E ++ L+ ME F +N L G+ P + L +L+ +L HR + Sbjct: 315 LVIEIKN-GFVPEAVLEQLYKLTPMEESFGINNVALVDGQ-PLTLGLKELLEVYLDHRFD 372 Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQ 427 V+ RRS FR R+ +++GLL A ++IDE+I +IR N + K ++ RFSL++ Q Sbjct: 373 VVRRRSEFRRGKKRDRLHLVEGLLTALVDIDEVIRLIRSSENSAQAKQRLMERFSLSDVQ 432 Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487 IL+ LR L K + ++++E D L AE E++ +L+S + ++ E+ V + F Sbjct: 433 TQYILDTPLRRLTKYDRIELETERDRLNAEIEELTRILDSDAELRKLVSGELAAVAKKFG 492 Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKS------------ 535 RRT E + A + +E P V++S+ G + + Sbjct: 493 ND-----RRTLLLESADVPAAPV-PLQVEDAPCRVLLSSTGLLARTANDEPFAQDAAKRV 546 Query: 536 -HSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLI 594 H V +SA+ + + A R+ ++ +P NL G E + Sbjct: 547 KHDVIVSAVPTTARGEVGVVTSAGRLLRLNVVDLPVLPEAMPTPNLSGGAPLAE----FV 602 Query: 595 DLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654 L ++++V D SS G A E+ + K S++E+++++ Sbjct: 603 SLEDDEEVVCLTTLDE-------SSPGLALGTEQGVV-----KRVVPDYPSNKEELEVIT 650 Query: 655 KVTGDHVAVVGENR---KLLIFSIDQIPEMSRGKG-VRLQSYKDGGISDVICFKICEG-- 708 GD + E R + L+F D + G VR Q GG++ V K+ +G Sbjct: 651 LKEGDRIVGAIELRTGEEDLVFVTDDAQLLRYQAGQVRPQGRPAGGVAGV---KLAQGAK 707 Query: 709 ---LTWIDSAGRSYNRSENDLLGWLGKRGGV-------GSLVP-KGFPRSGK 749 T +D A + + G RG + L P FPR G+ Sbjct: 708 VIAFTAVDPAADAM------VFTVAGSRGTLDDSVQTTAKLTPFDQFPRKGR 753 >gi|294083969|ref|YP_003550726.1| type IIA topoisomerase ,subunit A [Candidatus Puniceispirillum marinum IMCC1322] gi|292663541|gb|ADE38642.1| Type IIA topoisomerase , A subunit [Candidatus Puniceispirillum marinum IMCC1322] Length = 900 Score = 381 bits (979), Expect = e-103, Method: Compositional matrix adjust. Identities = 247/718 (34%), Positives = 391/718 (54%), Gaps = 61/718 (8%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 +S+ + + YL YA+S I RA+PD+RDG KPVHRRI++AM E D+ +KSARIV Sbjct: 20 ISISDEMRKSYLDYAMSVIVSRALPDVRDGLKPVHRRILYAMMEGNYDWTKPPRKSARIV 79 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+V+G HPHGD S+Y+++VR+AQ F R PL+ GQGNFG++DGD AAA RYTE+R+ + Sbjct: 80 GDVMGNYHPHGDSSIYEAMVRMAQDFSMRLPLVDGQGNFGSVDGDPAAAMRYTESRLARA 139 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 AE +L+ +D++ V+F Y+E EP V P+++PNLL NG +GIAVGMAT+IP HN E+ Sbjct: 140 AESLLRDIDKNTVEFAQNYDETQLEPTVLPAEYPNLLVNGANGIAVGMATNIPPHNPGEV 199 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 A A ++NPEI+ E+L E + GPDFPTG +I+ R I E+YR GRG +RAR V+ Sbjct: 200 IAACEAYVNNPEITTEELTEIVPGPDFPTGALIM-GRHGIREAYRTGRGSIIMRARAEVQ 258 Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKNR 318 + I+V EIPYQV K++L+E+I E++ K + + DIRDES +RIV+ K R Sbjct: 259 TNAKDRESIIVHEIPYQVNKAQLLERIGEMVRDKVLEGISDIRDESDRTGMRIVIEVK-R 317 Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378 D+++ ++ + ++T FP+NM ++ GR P M L +++ + R++V+ +R++F Sbjct: 318 DAAGDVVLNKLYRHTRLQTSFPVNMLAMNAGR-PIQMGLKDVIEAFCEFRKDVVIKRTTF 376 Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAII---------RNE------------------D 411 + R IL GL++A +IDEII +I RNE D Sbjct: 377 LLNKSRDRAHILAGLMVALASIDEIIELIKKAPDTETARNELCATAWPAHEVGAFIALID 436 Query: 412 KPKPVMV-SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQ 470 P +V ++L+E Q AIL LRL+ L +E ++ +E L + +L S + Sbjct: 437 DPGHAVVDDHYTLSEVQARAILELRLQRLTGMERDKLAAETQELADKIADYLDILGSDTR 496 Query: 471 QWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI 530 I E+ +E S RRT + AD+ + +I++E + V +S+RG+I Sbjct: 497 VSQVILDELAATRERLSDD-----RRTEITD-QLADQD--DEDLIQQEDMVVTVSHRGYI 548 Query: 531 --------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL-- 580 R+ + + + ++ D + +T IL ++ G Y L L Sbjct: 549 KRVPLSIYRAQRRGGKGRAGMKTRDEDFVTRLFVTNTHTPILFFTSKGMVYQLKCYKLPE 608 Query: 581 LSGRGHGEAIQLLIDLNHNQDIVTAFVYDS------TCKLLVVSSKGNAFIVEESEIIAN 634 + + G+A+ L+ + + I T ++ ++ GN S+ Sbjct: 609 SAPQSLGKAMVNLLPIEPEETINTVMPMPDDESSWGDLNVMFATASGNVRRNNLSDFTNI 668 Query: 635 TRKGKTFLKVSSEEKMKLVVKVT-GDHVAVVGENRKLLIFSIDQIPEMSRGK---GVR 688 R GK +K+ +++ V+ D V + N K + F+ + + + RG+ GVR Sbjct: 669 KRNGKIAMKMQDGDELVGVIPCNDDDDVLMATRNGKAIRFAANAV-RVFRGRDSTGVR 725 >gi|157829780|pdb|1AB4|A Chain A, 59kda Fragment Of Gyrase A From E. Coli Length = 493 Score = 381 bits (979), Expect = e-103, Method: Compositional matrix adjust. Identities = 215/499 (43%), Positives = 306/499 (61%), Gaps = 47/499 (9%) Query: 41 RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVR 100 RA+PD+RDG KPVHRR+++AM+ +G D+ A+KKSAR+VG+VIGK HPHGD +VYD++VR Sbjct: 3 RALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVR 62 Query: 101 LAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNE 160 +AQPF RY L+ GQGNFG+IDGDSAAA RYTE R+ ++A ++ ++++ VDF D Y+ Sbjct: 63 MAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDG 122 Query: 161 EDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEY 220 + P V P+K PNLL NG+SGIAVGMAT+IP HN+ E+ LA ID+ +ISIE L+E+ Sbjct: 123 TEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLAYIDDEDISIEGLMEH 182 Query: 221 IIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE-EVGRGSWCIVVTEIPYQVQK 279 I GPDFPT II R I E+YR GRG +RAR VE + G I+V EIPYQV K Sbjct: 183 IPGPDFPTAAII-NGRRGIEEAYRTGRGKVYIRARAEVEVDAKTGRETIIVHEIPYQVNK 241 Query: 280 SRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKNRSLDPDLLMESIFMLSDMETR 338 +RLIEKIAEL+ KR+ + +RDES +D +RIV+ K ++ ++++ +++ + ++ Sbjct: 242 ARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEVKRDAVG-EVVLNNLYSQTQLQVS 300 Query: 339 FPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYL 398 F +NM L G+ P++M L I+ ++ HRREV+ RR+ F ++ R IL+ L +A Sbjct: 301 FGINMVALHHGQ-PKIMNLKDIIAAFVRHRREVVTRRTIFELRKARDRAHILEALAVALA 359 Query: 399 NIDEIIAIIRNEDKP---KPVMVSR----------------------------------F 421 NID II +IR+ P K +V+ + Sbjct: 360 NIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLY 419 Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481 LTE Q AIL+LRL+ L LE ++ E LL + ++ +L S + I E+ Sbjct: 420 YLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRILGSADRLMEVIREELEL 479 Query: 482 VKEIFSKSTDLGRRRTTFC 500 V+E F +RRT Sbjct: 480 VREQFGD-----KRRTEIT 493 >gi|291558322|emb|CBL35439.1| DNA gyrase subunit A [Eubacterium siraeum V10Sc8a] Length = 878 Score = 381 bits (979), Expect = e-103, Method: Compositional matrix adjust. Identities = 231/633 (36%), Positives = 353/633 (55%), Gaps = 62/633 (9%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 E + V + + E +L Y+++ + RA+PD+RDG KPVHRRII+ M+E ++K Sbjct: 13 EKLIQVDIEKEMRESFLQYSMAVLVSRALPDVRDGMKPVHRRIIYTMNEADNTSSKPYRK 72 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 A VGEV+GK HPHGD SVYD+LVRLAQ F RYPLI G GNFG++DGD AAYRYTEA Sbjct: 73 CAYTVGEVLGKYHPHGDASVYDALVRLAQDFSMRYPLIDGHGNFGSVDGDPPAAYRYTEA 132 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 RM ++A +L+ + +D +D+ Y+++ EP V P KFPNLL NG+ GIAVGMAT+IP H Sbjct: 133 RMAKIASELLKDIKKDTIDWGKNYDDKLDEPTVLPVKFPNLLVNGSVGIAVGMATNIPPH 192 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 N+ E+C+A +A +DNPE IE++L+YI GPDFPTGGII+ I +Y GRG +R Sbjct: 193 NLNEVCDAIVARMDNPECGIEEILQYIKGPDFPTGGIIM-GYSGIRSAYYTGRGKITLRG 251 Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314 + + E G S I+VTEIPY V KS+L+E +L+ KRI + ++RDES +D +++ Sbjct: 252 KAEIVEEGNHSR-IIVTEIPYMVNKSKLLEVTGQLMRDKRIEGISNLRDESDKDGMRIVY 310 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 R ++ +++ ++ + ++ + M L G P+ + L IL ++A +++++ R Sbjct: 311 ELKRDVNAQVVLNKLYSFTQLQDTVGVIMIALVNGE-PKQLTLLEILDNYIAFQKQIITR 369 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRF---------- 421 R++F ++ R IL+G L+A NIDE+I+I+R+ + K ++ RF Sbjct: 370 RTAFDLKKARERAHILQGFLLAIDNIDEVISILRSSKSVQEGKERLMERFKEDDLAKLLQ 429 Query: 422 ----------------SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLL 465 L+E Q DAI+ +RL L LE ++ SEL ++ + +L Sbjct: 430 RAMGENYKDVHFEHEIGLSEEQADAIVQMRLGQLTGLERDKVISELAEIMEKINDFLDIL 489 Query: 466 NSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVIS 525 +S ++ I EI +KE + RRT VS + +I +E + + Sbjct: 490 SSDERVKEIIKEEITAIKEKYGDE-----RRTAIEPVS---GEVDIEDLIPEEECVLTYT 541 Query: 526 NRGWIRSLKSHSVD-----------LSALHFKEGDSLKIALHAHTTDRILLLSTDG---- 570 N G+I K VD +S + +E D ++ + T D IL ++ G Sbjct: 542 NIGYI---KRQPVDVYNLQKRGGKGVSGMKQREEDFVEDMFISSTHDNILFITNYGNMYK 598 Query: 571 -KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602 K Y +P G S + G I L+ L+ + I Sbjct: 599 LKCYEVPEG---SKQSRGTNIVNLLQLDEGERI 628 >gi|254412126|ref|ZP_05025901.1| DNA gyrase, A subunit [Microcoleus chthonoplastes PCC 7420] gi|196181092|gb|EDX76081.1| DNA gyrase, A subunit [Microcoleus chthonoplastes PCC 7420] Length = 838 Score = 381 bits (979), Expect = e-103, Method: Compositional matrix adjust. Identities = 260/733 (35%), Positives = 405/733 (55%), Gaps = 68/733 (9%) Query: 35 LSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSV 94 +S I RA+PD RDG KPVHRRI++AM E+GL F+K AR+VGEV+GK HPHGD +V Sbjct: 1 MSVIVGRALPDARDGLKPVHRRILYAMHELGLTPDRPFRKCARVVGEVLGKYHPHGDTAV 60 Query: 95 YDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVA-ELILQGVDEDAVD 153 YD+LVR+AQ F R PLI+G GNFG++D D AA RYTE R+ +A + +L+ ++ + VD Sbjct: 61 YDALVRMAQDFSMRSPLINGHGNFGSVDNDPPAAMRYTECRLQSLATDSLLRDIESETVD 120 Query: 154 FRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEIS 213 F D ++ EP+V P++ P +L NG+SGIAVGMAT+IP HN+ E+ + +ALI NPEI+ Sbjct: 121 FLDNFDGSQQEPIVLPARVPQILLNGSSGIAVGMATNIPPHNLGELVDGLVALIHNPEIT 180 Query: 214 IEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEV---GR-GSWCIV 269 ++L++YI PDFPTGG I+ R I ++Y GRG +R VE + GR I+ Sbjct: 181 EKELMQYIPAPDFPTGGQIL-GRSGIKDAYTTGRGSITMRGVAQVETIEHRGRPDKEAII 239 Query: 270 VTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESI 329 VTE+PYQ K+ LIEKIAE++ KRI + DIRDES V+ R P +++ ++ Sbjct: 240 VTELPYQTNKAALIEKIAEMVNDKRIEGISDIRDESDRRGMRVVIELKRDAYPRVVLNNL 299 Query: 330 FMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEI 389 + + +++ F NM L +G PQ++ + L+ +L R E + RR+ + ++ + R + Sbjct: 300 YKQTPLQSNFGANMLAL-VGNEPQLLTIKQFLEVFLEFRIETITRRTQYELRKAEERDHL 358 Query: 390 LKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQ 446 L+GLLIA N+D +IA+IR + K ++ +F L+E Q DAIL ++LR L LE + Sbjct: 359 LQGLLIALDNLDAVIAVIRAANDTATAKSQLIEQFGLSEPQADAILQMQLRRLTALEAQK 418 Query: 447 IKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEV-SRA 505 I++E + L + +L + + EI E + + K+T RRT EV Sbjct: 419 IQAEHEELQVRIADLQDILANRSR-----ILEIIETEALQIKTTHDTPRRTAIQEVEGEL 473 Query: 506 DKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL--------SALHFKEGDSLKIALHA 557 D L I E ++++ +G+I+ + HS +A KE D ++ L Sbjct: 474 DDIDL----IANEKAVILVTEQGYIKRMPIHSFAAQARATRGKAAARMKEDDGVEHFLTC 529 Query: 558 HTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI-----VTAFV 607 D +L S G +AY +PA S G I ++ + H++ I V+ F Sbjct: 530 CDHDSLLFFSDRGVVYSLRAYQIPAA---SRTARGVPIVQMLPIPHDEKITSVVPVSEFT 586 Query: 608 YDSTCKLLVVSSKG-------NAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH 660 D L++++ KG +AF S I AN G + + ++++ V + Sbjct: 587 DD--VYLVMLTRKGYIKKTALDAF----SNIRAN---GLIAISLGEGDQLRWVRLCRAED 637 Query: 661 VAVVGENRKLLIF---SIDQIPEMSRG----KGVRLQSYKDGGIS-DVICFKICEGLTWI 712 ++G ++ + I DQ+ + R K ++L+S KD IS D++ ++ E L I Sbjct: 638 SIIIGSSQGMAIHFKADHDQLRPLGRATRGVKAMKLRS-KDELISMDILPAQVVERL--I 694 Query: 713 DSAGRSYNRSEND 725 +A +E+D Sbjct: 695 ATANSEEVETEDD 707 >gi|225570330|ref|ZP_03779355.1| hypothetical protein CLOHYLEM_06427 [Clostridium hylemonae DSM 15053] gi|225160862|gb|EEG73481.1| hypothetical protein CLOHYLEM_06427 [Clostridium hylemonae DSM 15053] Length = 833 Score = 381 bits (978), Expect = e-103, Method: Compositional matrix adjust. Identities = 238/674 (35%), Positives = 379/674 (56%), Gaps = 38/674 (5%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 + V V L+ +E Y+ YA+S I RA+PD+RDG KPV RRI+++M E+ +K Sbjct: 7 DKVHEVDLKKTMETSYIDYAMSVIASRALPDVRDGLKPVQRRILYSMIELNNGPDKPHRK 66 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 ARIVG+ +GK HPHGD S+Y +LV +AQ + RYPL+ G GNFG++DGD AAA RYTEA Sbjct: 67 CARIVGDTMGKYHPHGDSSIYGALVNMAQEWSTRYPLVDGHGNFGSVDGDGAAAMRYTEA 126 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 R+++++ + +++D VDF ++E + EPVV P++FPNLL NGTSGIAVGMAT+IP H Sbjct: 127 RLSKISMELTADINKDTVDFIPNFDETEKEPVVLPARFPNLLVNGTSGIAVGMATNIPPH 186 Query: 195 NVQEICEAALALIDNPEISIEK-----LLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249 N+ E+ A + +ID+ E+ +L+ I GPDFPTGG+I+ +R I E+YR GRG Sbjct: 187 NLAEVINAVVKIIDDQIEENEETTIEDILKIIKGPDFPTGGMILGTR-GIEEAYRTGRGK 245 Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309 RVRA +E + G I+V+E+PY V K+RLIEKIAEL+ K+I + D+ D+S + Sbjct: 246 VRVRAVTDIETMPNGKSRIIVSELPYMVNKARLIEKIAELVRDKKIDGITDLSDQSNREG 305 Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369 V R + ++++ ++ + ++ F + M L + P+VM L +L +L H+ Sbjct: 306 MRVCIELRRDANANVILNQLYKHTQLQDTFGVIMLSL-INNEPRVMNLLDMLNYYLEHQE 364 Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTEN 426 EV+ RR+ + + + R IL+GLLIA NIDE+I IIR D K ++ RF L++ Sbjct: 365 EVVTRRTKYELNKAEERAHILEGLLIALDNIDEVIRIIRGSDNVQAAKAELMERFGLSDV 424 Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486 Q AI+++RLR+L LE ++++E L+ + ++ ++L K I EI +++ + Sbjct: 425 QSQAIVDMRLRALTGLEREKLENEYKELMEKIGELKAILADRKLLLGVIKEEIIIIRDKY 484 Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD------- 539 G R T D + + +I ++ + + ++ G+I+ + + + Sbjct: 485 ------GDERRTSIGFDEFDIS--MEDLIPRQDVVITMTKLGYIKRMSNDTFKAQHRGGK 536 Query: 540 -LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDL 596 + + E D ++ +T I+ + G+ Y L A + S G AI L+ L Sbjct: 537 GIKGMQTLEEDYVEELFMTNTHHYIMFFTNTGRVYRLKAYEIPEASRTSRGTAIINLLQL 596 Query: 597 NHNQDIVTAFV----YDSTCKLLVVSSKGNAFIVEESEII--ANTRKGKTFLKVSSEEKM 650 + I TA + Y L + + KG +V+++ I AN RK EE Sbjct: 597 MPEEKI-TAVIPIEEYKEGEYLFMSTKKG---LVKKTPITDYANVRKTGLAAITLREEDE 652 Query: 651 KLVVKVTGDHVAVV 664 + VK T + ++ Sbjct: 653 LIEVKYTNNERDII 666 >gi|313205817|ref|YP_004044994.1| DNA gyrase subunit a [Riemerella anatipestifer DSM 15868] gi|312445133|gb|ADQ81488.1| DNA gyrase subunit A [Riemerella anatipestifer DSM 15868] gi|325336743|gb|ADZ13017.1| Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit [Riemerella anatipestifer RA-GD] Length = 841 Score = 381 bits (978), Expect = e-103, Method: Compositional matrix adjust. Identities = 225/608 (37%), Positives = 361/608 (59%), Gaps = 36/608 (5%) Query: 26 LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85 ++ Y+ Y++S I RA+PD+RDG KPVHRR+++ M +G+ + KSARIVG+V+GK Sbjct: 17 MKSSYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMYGLGVFSNKKYLKSARIVGDVLGK 76 Query: 86 LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145 HPHGD SVYD++VR+AQP+ RYP + GQGNFG++DGD AA RYTEAR+ ++++ IL Sbjct: 77 YHPHGDSSVYDAMVRMAQPWSLRYPQVDGQGNFGSMDGDPPAAMRYTEARLKKISDEILS 136 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 +D++ VDF++ +++ EP V P+K PNLL NGTSGIAVGMAT++ HN+ E +A A Sbjct: 137 DLDKETVDFQNNFDDSLQEPTVLPTKIPNLLVNGTSGIAVGMATNMAPHNLSESVDAICA 196 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265 IDN I I++L++YII PDFPTGGII + + +++ GRG +RA+ EE+G + Sbjct: 197 YIDNKNIEIDELMKYIIAPDFPTGGIIY-GYDGVRDAFHTGRGRIVLRAKVAFEEIGNRN 255 Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFPKNRSLDPDL 324 I+VTEIPY V K+ +I + +EL+ +I + +IRDES +R+V KN ++ P++ Sbjct: 256 -AIIVTEIPYLVNKAEMIARTSELVKEDKIQGIHEIRDESDRRGMRVVYELKNDAI-PNV 313 Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384 ++ ++ + ++T F +N L GR PQ + L I+ ++ HR E++ RR+ + ++ Sbjct: 314 VLNLLYKYTALQTSFSVNNIALVKGR-PQQLNLKDIIVHFVEHRHEIVIRRTQYELKKAR 372 Query: 385 RRVEILKGLL--IAYLN-IDEIIAIIRNEDKPKPV---MVSRFSLTENQVDAILNLRLRS 438 R IL+G + IA + +D+ I+IIR+ P+ +++ F L++ Q AIL+LRL Sbjct: 373 ERAHILEGFMKVIATQDTLDKAISIIRHSATPQAAKEGLIAEFELSDIQAQAILDLRLAR 432 Query: 439 LRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTT 498 L +E +I+ E ++ ++ +L + + + I E+ EVKE + G R T Sbjct: 433 LTGMELDKIRDEYKAIMDLINDLEDILANEARCYQIIKDELLEVKEKY------GDERRT 486 Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIR-----SLKSHS---VDLSALHFKEGDS 550 + S + + + I E + + IS+ G+I+ K+ S V A ++ D Sbjct: 487 EIDYSGGEMSI--EDFIPNEEVVLTISHAGYIKRTLLSEYKTQSRGGVGNRAASTRDEDF 544 Query: 551 LKIALHAHTTDRILLLSTDGKAYTL-----PAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605 L+ + A +L + GK Y L P G S G AIQ LI++ + D + A Sbjct: 545 LEYIVSATNHQYMLFFTEKGKCYWLRVFEIPEG---SKTAKGRAIQNLINIEPD-DKIKA 600 Query: 606 FVYDSTCK 613 ++ + K Sbjct: 601 YIRTNDLK 608 >gi|288800089|ref|ZP_06405548.1| DNA gyrase, A subunit [Prevotella sp. oral taxon 299 str. F0039] gi|288333337|gb|EFC71816.1| DNA gyrase, A subunit [Prevotella sp. oral taxon 299 str. F0039] Length = 858 Score = 381 bits (978), Expect = e-103, Method: Compositional matrix adjust. Identities = 214/592 (36%), Positives = 339/592 (57%), Gaps = 26/592 (4%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 +++ ++ Y+ Y++S I RA+PD+RDGFKPVHRRI++ M ++G +KK AR+V Sbjct: 10 INIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMRDIGNTSSNPYKKCARVV 69 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 GEV+GK HPHGD SVY +LVRLAQ + RY L+ GQGNFG++DGDSAAA RYTE R+ ++ Sbjct: 70 GEVLGKYHPHGDSSVYGALVRLAQDWNMRYTLVDGQGNFGSVDGDSAAAMRYTECRLEKI 129 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 E ++ +D+D VD ++E EP V P+K PNLL NG +GIAVGMAT++P+HN+ E+ Sbjct: 130 GEYVMDDLDKDTVDMVPNFDETLLEPTVMPTKIPNLLVNGGNGIAVGMATNMPTHNLSEV 189 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 + A IDN EI+ E+L++YI PDFPTGG I + + ++Y GRG +RA+ +E Sbjct: 190 IDGCCAYIDNEEINTEELMQYIQAPDFPTGGYIY-GLQGVKDAYETGRGRVVMRAKAEIE 248 Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLFPKNR 318 I++TEIPY V K +LIE IA+L+ ++ + + DES + +RIV+ K R Sbjct: 249 S-DENQDKIIITEIPYGVNKQQLIEYIADLVKEGKLEGISNANDESGRQGMRIVIDVK-R 306 Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378 + ++L+ +F ++ +++ F +N L GR P+++ L +K ++ HR +V RR+ F Sbjct: 307 DANANVLLNKLFKMTALQSSFSVNNIALVKGR-PRLLTLKDCIKYFVEHRHDVTIRRTKF 365 Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVDAILNLR 435 ++ + R IL+G++IA NIDE++ II+ P + + RF+L E Q AI+++R Sbjct: 366 ELKKAEERAHILEGMIIASDNIDEVVQIIKASRTPALARTNLEQRFNLDELQSQAIVDMR 425 Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495 L + L+ ++ ++ D L + S+L + E+ E+KE F R Sbjct: 426 LSQITGLKVEELHAQFDELQQRIAYLTSILTDDNLCKKVMKDELNELKEKFGDE-----R 480 Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKE 547 RT A + +P+ + +S+ G+I R V + +E Sbjct: 481 RTKIIPAEHEFNA---EDFYPNDPVVITVSHLGYIKRTPLSEFREQARGGVGSKGVRHRE 537 Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLN 597 D + A +L + G+ Y L N+ G G AIQ L++++ Sbjct: 538 QDFTEFIYPATMHQTMLFFTKKGRCYWLKCYNIPEGTKDSKGRAIQNLLNID 589 >gi|34580784|ref|ZP_00142264.1| DNA gyrase subunit A [Rickettsia sibirica 246] gi|28262169|gb|EAA25673.1| DNA gyrase subunit A [Rickettsia sibirica 246] Length = 905 Score = 381 bits (978), Expect = e-103, Method: Compositional matrix adjust. Identities = 246/712 (34%), Positives = 390/712 (54%), Gaps = 63/712 (8%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 N+ V++ ++ YL YA+S I RAIPD+RDG KPVHRRII++M E G ++KS Sbjct: 8 NLVPVNIEDEMKVSYLDYAMSVIVSRAIPDVRDGLKPVHRRIIYSMHEAGNHASKPYRKS 67 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 ARIVG+V+GK HPHGD ++YD+LVR+AQ F R PL+ GQGNFG++DGD+AAA RYTE+R Sbjct: 68 ARIVGDVMGKYHPHGDSAIYDALVRMAQDFSLRLPLVDGQGNFGSMDGDAAAAMRYTESR 127 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 M +V+ +++ +D++ V F Y+ + EP V P+ FPNLL NG+ GIAVGMAT+IP HN Sbjct: 128 MAKVSYKLVEDIDKETVSFNPNYDGSEEEPSVLPAMFPNLLVNGSGGIAVGMATNIPPHN 187 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 + E+ +A IDN +I I LLE + GPDFPTG +I+ I +Y GRG +R R Sbjct: 188 LGEVIDACCLYIDNNDIEILDLLEVVKGPDFPTGSMIL-GISGIRSAYLTGRGSIIMRGR 246 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314 +E +G I++TEIPY V K+RL+EKIAE++ KRI + D+RDES ++ VRI + Sbjct: 247 AEIENIGNSRQAIIITEIPYMVNKARLVEKIAEMVKEKRIEGISDLRDESNKNGVRIFIE 306 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K + + ++++ I+ + ++T F + M L G +P+VM L ++ +++ R V+ Sbjct: 307 LK-KDVVAEVVLNQIYACTQLQTSFGVIMLALKDG-LPKVMNLKEVIAAFVSFREVVITN 364 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP----KPVMVSRF--------- 421 R+ + + R IL GL IA NIDEII II+ + P + +MV ++ Sbjct: 365 RTIYLLNKARDRAHILLGLTIAVSNIDEIIRIIKASNDPNAAKQELMVRQWEALNILPLV 424 Query: 422 ---------------SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466 + TE Q AIL +RL+ L +E+ +++ +L NL+ E + ++L Sbjct: 425 KLVDDKAMLNEQGKCNFTEVQAKAILEMRLQRLTAMEKNKLEEDLKNLITEITEYLNILG 484 Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526 S + + E+ +VKE F+ R T E D+ + +I++E + V ++ Sbjct: 485 SRTRLLEILKEELIKVKEEFATP------RLTSIEFGEFDQDI--EDLIQREEMVVTVTL 536 Query: 527 RGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAG 578 G+I R+ K S L ++ D T +L S G+ Y+L Sbjct: 537 GGYIKRVPLSSYRAQKRGGKGRSGLSMRDEDITTQVFVGSTHTPMLFFSNIGQVYSLKLY 596 Query: 579 NL-LSG-RGHGEAIQLLIDLNHNQDIVTAFVYD------STCKLLVVSSKGNAFIVEESE 630 L LS +G G + ++ L N+ I ++ ++KGN + S+ Sbjct: 597 KLPLSNPQGKGRPMVNILPLKANEHITNIMPLPENQDERDNLNIMFATAKGN---IRRSD 653 Query: 631 IIANTR---KGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQI 678 ++ + GK +++ ++K+ V D H+ + + K L F ++ + Sbjct: 654 LLDFKKLQSNGKIAIRLDEDDKLIDVKPCKEDEHILLATKAGKALRFPVESL 705 >gi|77412214|ref|ZP_00788533.1| DNA topoisomerase IV, A subunit [Streptococcus agalactiae CJB111] gi|77161721|gb|EAO72713.1| DNA topoisomerase IV, A subunit [Streptococcus agalactiae CJB111] Length = 819 Score = 381 bits (978), Expect = e-103, Method: Compositional matrix adjust. Identities = 234/698 (33%), Positives = 398/698 (57%), Gaps = 28/698 (4%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 N++ +SL + ER+ Y+ I+ERA+PD+RDG KPV RRI+++M++ G F F+KS Sbjct: 3 NIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGFRKS 62 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 A+ VG V+G HPHGD S+YD++VR++Q + R LI GN G++DGD AAA RYTEAR Sbjct: 63 AKSVGNVMGNFHPHGDSSIYDAMVRMSQDWKNRETLIEMHGNNGSMDGDPAAAMRYTEAR 122 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 ++++A +LQ +D++ V F +++ + EP V P+ FPNLL NG +GI+ G AT IP HN Sbjct: 123 LSEIAGYLLQDIDKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPHN 182 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 + E+ +A + +ID+P+ ++KL+E++ GPDFPTG II + ++ I ++Y G+G VR+R Sbjct: 183 LAEVIDAVVYMIDHPKAKLDKLMEFLPGPDFPTGAII-QGKDEIRKAYETGKGRVAVRSR 241 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315 +E + G I+VTEIPY+V KS L+++I ++ + ++P + ++RDES D + Sbjct: 242 TAIETLKGGKKQIIVTEIPYEVNKSVLVKRIDDVRVNNKVPGIAEVRDESDRDGLRIAIE 301 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 + D +++ +F +D++ + NM + P+ + L IL ++AHRRE++ R Sbjct: 302 LKKEADETIVLNYLFKYTDLQVNYNFNMVAID-DYTPKQVGLSRILTSYIAHRREIIIAR 360 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432 S F + ++R+ I++GL+ +DE+IA+IR N+ K + + +E Q +AI+ Sbjct: 361 SKFDKEKAEKRLHIVEGLIRVLSILDEVIALIRASENKADAKENLKVSYEFSEAQAEAIV 420 Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492 L+L L + ++ E + L + + ++++ + +N + E+REVK+ F+ + Sbjct: 421 TLQLYRLTNTDIVTLREEEEELRQQITMLKAIISDERTMYNVMKRELREVKKKFANT--- 477 Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI-----RSLKSHSVDLSALHFKE 547 RR+ E++ + +IE E V ++ G++ RS + +VD L +E Sbjct: 478 --RRSELQELAETIEIDTASLIIE-EDTYVSVTRGGYVKRTSPRSFNASTVD--ELGKRE 532 Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIVT 604 D L +A TT +L+ + G P L R GE + Q L++ N++I+ Sbjct: 533 DDELIFVSNAKTTQHLLMFTNLGNLAYRPVHELADIRWKDVGEHLSQNLVNFASNEEIIY 592 Query: 605 AFVYDSTCK--LLVVSSKGNAFIVEESEIIA-NTRKGKT--FLKVSS-EEKMKLVVKVTG 658 A + D K V+S G E EI T K KT + K+ + ++ + V + Sbjct: 593 AELVDDFTKETYFAVTSLGQIKRFERQEISPWRTYKSKTAKYAKLKNVDDYVVTVAPIQL 652 Query: 659 DHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDG 695 + V +V N L FSI+ +P + S+ GV+ + KD Sbjct: 653 EDVILVTYNGYALRFSINDVPVVGSKAAGVKAMNLKDS 690 >gi|157273390|gb|ABV27289.1| DNA gyrase A subunit [Candidatus Chloracidobacterium thermophilum] Length = 817 Score = 381 bits (978), Expect = e-103, Method: Compositional matrix adjust. Identities = 222/608 (36%), Positives = 359/608 (59%), Gaps = 26/608 (4%) Query: 12 LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71 + ++ + SL + YL YA+S I RA+PD+RDG KPV RR++ M E+G + Sbjct: 1 MTDQRLIPASLEEEMRRSYLDYAMSVIVSRALPDVRDGLKPVQRRVLWTMHELGNTYDKP 60 Query: 72 FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131 +KKSAR+VG+ IGK HPHGDQ VY+++VR+ Q F R PLI GQGNFG++DGD+ AA RY Sbjct: 61 YKKSARVVGDAIGKYHPHGDQPVYEAIVRMVQSFSMREPLIDGQGNFGSVDGDAPAAMRY 120 Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191 TE R+ +AE++L ++++ VDFR+ Y+ EPVV P++FPN+L NG GIAVGM+T+I Sbjct: 121 TEVRLAPIAEMLLSDIEKETVDFRENYDGSLLEPVVLPARFPNVLVNGAMGIAVGMSTNI 180 Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251 P HN+ E+ +A + L+++P +++ L++++ GPDFPT G I R I ++Y GRG Sbjct: 181 PPHNLGEVLDATIYLVNHPTATVDDLMQFVQGPDFPTAGFIC-GRTGIRDAYLTGRGSVT 239 Query: 252 VRARWCVEEV-GRGS---WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307 +RAR ++ V G+G IVVTE+PYQV K+ L+EKIAEL+ K+I + D+RDES Sbjct: 240 LRARAAIDYVAGKGERERQAIVVTELPYQVNKASLLEKIAELVSEKKIEGIADLRDESDR 299 Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367 + V+ R D +++ ++F + M+++ + M + GR PQV+ L +L ++ H Sbjct: 300 EGMRVVIELKRDADAKVVLNNLFKYTPMQSKLGIIMLAIVNGR-PQVLNLVEMLNYFVEH 358 Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLT 424 RREV+ RR++F ++ + RV IL+GL A ++ II +IR + + + +++RF+L+ Sbjct: 359 RREVVRRRTAFELRKAESRVHILEGLRKALEALEAIITLIREAKSSAEAREALMTRFALS 418 Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484 Q AIL ++L+ L LE ++ E + L+ ++ +L+ + I E++EV++ Sbjct: 419 RVQAQAILEMQLQRLTSLERQKLLEEYEGLVKRMAELREILDKEAKLREVIVQELQEVRK 478 Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSH 536 + RRT + D + +I KE + + I+ G+I R+ K Sbjct: 479 AYGTP-----RRTQIVDCESTDFTI--EDLIPKEEVVITITREGYIKRTPVSAYRTQKRG 531 Query: 537 SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLI 594 V + K D ++ A T +L+ + G+ Y + + + G G+AI LI Sbjct: 532 GVGRRGMTTKAEDEVESLYIASTHSFLLIFTAKGQVYKVRVHEIPDAATSGRGKAIVNLI 591 Query: 595 DLNHNQDI 602 +L + I Sbjct: 592 ELPEGERI 599 >gi|239916577|ref|YP_002956135.1| DNA gyrase subunit A [Micrococcus luteus NCTC 2665] gi|281414959|ref|ZP_06246701.1| DNA gyrase subunit A [Micrococcus luteus NCTC 2665] gi|239837784|gb|ACS29581.1| DNA gyrase subunit A [Micrococcus luteus NCTC 2665] Length = 898 Score = 381 bits (978), Expect = e-103, Method: Compositional matrix adjust. Identities = 230/629 (36%), Positives = 364/629 (57%), Gaps = 32/629 (5%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 + V+ V L ++ YL YA++ I RA+PD+RDG KPVHRR+++AM + G AF K Sbjct: 42 DKVEPVDLESEMKRSYLDYAMAVIVGRALPDVRDGLKPVHRRVLYAMYDGGYRPDRAFNK 101 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 SAR+VG+V+G HPHGD ++YD+LVRL Q +VQRYPL GQGNFG+ D AAA RYTE Sbjct: 102 SARVVGDVMGNYHPHGDTAIYDALVRLIQDWVQRYPLALGQGNFGSPGNDGAAAQRYTET 161 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 +M +A +++ +DED VD +D Y+ + EPVV P+++PNLL NG+SGIAVGMAT+IP H Sbjct: 162 KMAPLAMEMVRDIDEDTVDMQDNYDGKQQEPVVLPARYPNLLVNGSSGIAVGMATNIPPH 221 Query: 195 NVQEICEAALALIDNPEISIEKLLEYII----GPDFPTGGIIVESRESIVESYRLGRGGF 250 N++E+ +++PE + E+LLE ++ GPDFPTG I+ R+ I E YR GRG Sbjct: 222 NMREVAAGVQWYLEHPEATREELLEALLARVHGPDFPTGAQIL-GRKGIEEVYRTGRGPI 280 Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV- 309 +RA VEE+ +G C+VVTE+PY L KIAE++ +I + D+RDE++ Sbjct: 281 TMRAVVNVEEI-QGRTCLVVTELPYMTNPDNLAAKIAEMVRDGKISGIADMRDETSGRTG 339 Query: 310 -RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368 R+V+ K ++ +++ +++ +++++ F NM L G VP+ + LDG + W+ H+ Sbjct: 340 QRLVIVLKRDAV-AKVVLNNLYKHTELQSNFSANMLALVDG-VPRTLSLDGFVHHWVKHQ 397 Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTE 425 +V+ RR++FR + + R IL+GLL A +DE+IA IR + D + + + + Sbjct: 398 IDVIVRRTAFRKRKAEERAHILRGLLKALDMLDEVIATIRRSASADVAREALKELLDIDD 457 Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485 Q AIL ++LR L LE +I+ E D+L+A+ + + +L S ++Q I+ E+ EI Sbjct: 458 VQAQAILQMQLRQLAALESQKIQDEYDDLMAKIAEYNRILESPQRQREVIS---EELAEI 514 Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHS 537 +K D RRT D + + +I +E + V I+ G++ RS Sbjct: 515 VAKHGD--DRRTEIMAGFDGDMSI--EDLIPEEEMVVSITRGGYVKRTRIDQYRSQARGG 570 Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEAIQLLID 595 + + D ++ L T +L + G+ Y + LL +GR G+ + L+ Sbjct: 571 KGVRGATLRGDDVVEHFLTVSTHHWLLFFTNFGRVYRIKTYELLEAGRDAKGQHVANLLA 630 Query: 596 LNHNQDI--VTAFVYDSTCKLLVVSSKGN 622 ++ I + V LV++++G Sbjct: 631 FQPDERIAQIQPLVDYGRAPYLVLATRGG 659 >gi|318057388|ref|ZP_07976111.1| DNA gyrase subunit A [Streptomyces sp. SA3_actG] gi|318079450|ref|ZP_07986782.1| DNA gyrase subunit A [Streptomyces sp. SA3_actF] Length = 874 Score = 381 bits (978), Expect = e-103, Method: Compositional matrix adjust. Identities = 230/626 (36%), Positives = 354/626 (56%), Gaps = 33/626 (5%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 V+ V L ++ YL YA+S I RA+PD+RDG KPVHRR+++AM + G F K A Sbjct: 31 VEPVGLETEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMYDGGYRPEKGFYKCA 90 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+V+G HPHGD S+YD+LVRLAQ + R PL+ GNFG+ D AAA RYTE +M Sbjct: 91 RVVGDVMGNYHPHGDSSIYDALVRLAQTWAMRMPLVDSNGNFGSPGNDPAAAMRYTECKM 150 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 ++ +++ +DE+ VDF D Y+ EP V P++FPNLL NG++GIAVGMAT+IP HN+ Sbjct: 151 APLSMEMVRDIDEETVDFSDNYDGRSQEPDVLPARFPNLLINGSAGIAVGMATNIPPHNL 210 Query: 197 QEICEAALALIDNPEISIEKLLEYII----GPDFPTGGIIVESRESIVESYRLGRGGFRV 252 +E+ A + +PE S E+LL+ +I GPDFPTG ++V R+ I E+YR GRG + Sbjct: 211 REVAAGAQWYLAHPEASNEELLDALIERIKGPDFPTGALVV-GRKGIEEAYRTGRGSIPM 269 Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV--R 310 RA VEE+ + C+VVTE+PYQV L +KIA+L+ +I + D+RDE++ R Sbjct: 270 RAVVEVEEI-QNRQCLVVTELPYQVNPDNLAQKIADLVKDGKIGGIADVRDETSSRTGQR 328 Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370 +V+ K ++ +++ ++F +D++T F NM L G VP+ + LD ++ W+ H+ E Sbjct: 329 LVVVLKRDAV-AKVVLNNLFKHTDLQTNFSANMLALVDG-VPRTLSLDAFIRHWVTHQIE 386 Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQ 427 V+ RR+ FR++ + R IL+GLL A IDE+IA+IR D + ++ + E Q Sbjct: 387 VIVRRTRFRLRKAEERAHILRGLLKALDAIDEVIALIRRSDTVEDARGGLMGLLEIDEIQ 446 Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487 +AIL ++LR L LE ++ E D L ++ ++L S ++Q + E+ ++ + F Sbjct: 447 ANAILEMQLRRLAALERQKLVQEHDELQRRIDEYKAILASPERQRQIVHDELGQIVDKFG 506 Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVD 539 RR+ D + +I +E I V IS G++ RS K Sbjct: 507 DD-----RRSQLVPF---DGDMSMEDLIAEEDIVVTISRSGYVKRTRTDDYRSQKRGGKG 558 Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEAIQLLIDLN 597 + KE D + T +L + G+ Y A L +GR G+ + L+ Sbjct: 559 VRGAKLKEDDIVDHFFVTTTHHWLLFFTNKGRVYRAKAYELPDAGRDARGQHVANLLAFQ 618 Query: 598 HNQDI--VTAFVYDSTCKLLVVSSKG 621 ++ I + A LV+++KG Sbjct: 619 PDESIAQILAIKDYEAAPYLVLATKG 644 >gi|25011277|ref|NP_735672.1| DNA topoisomerase IV subunit A [Streptococcus agalactiae NEM316] gi|76787368|ref|YP_329856.1| DNA topoisomerase IV subunit A [Streptococcus agalactiae A909] gi|77412789|ref|ZP_00788994.1| DNA topoisomerase IV, A subunit [Streptococcus agalactiae 515] gi|15186714|dbj|BAB62880.1| DNA topoisomerase IV subunit C [Streptococcus agalactiae] gi|23095701|emb|CAD46887.1| Unknown [Streptococcus agalactiae NEM316] gi|76562425|gb|ABA45009.1| DNA topoisomerase IV, A subunit [Streptococcus agalactiae A909] gi|77161085|gb|EAO72191.1| DNA topoisomerase IV, A subunit [Streptococcus agalactiae 515] Length = 819 Score = 381 bits (978), Expect = e-103, Method: Compositional matrix adjust. Identities = 234/698 (33%), Positives = 398/698 (57%), Gaps = 28/698 (4%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 N++ +SL + ER+ Y+ I+ERA+PD+RDG KPV RRI+++M++ G F F+KS Sbjct: 3 NIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGFRKS 62 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 A+ VG V+G HPHGD S+YD++VR++Q + R LI GN G++DGD AAA RYTEAR Sbjct: 63 AKSVGNVMGNFHPHGDSSIYDAMVRMSQDWKNRETLIEMHGNNGSMDGDPAAAMRYTEAR 122 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 ++++A +LQ +D++ V F +++ + EP V P+ FPNLL NG +GI+ G AT IP HN Sbjct: 123 LSEIAGYLLQDIDKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPHN 182 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 + E+ +A + +ID+P+ ++KL+E++ GPDFPTG II + ++ I ++Y G+G VR+R Sbjct: 183 LAEVIDAVVYMIDHPKAKLDKLMEFLPGPDFPTGAII-QGKDEIRKAYETGKGRVAVRSR 241 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315 +E + G I+VTEIPY+V KS L+++I ++ + ++P + ++RDES D + Sbjct: 242 TAIETLKGGKKQIIVTEIPYEVNKSVLVKRIDDVRVNNKVPGIAEVRDESDRDGLRIAIE 301 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 + D +++ +F +D++ + NM + P+ + L IL ++AHRRE++ R Sbjct: 302 LKKEADETIVLNYLFKYTDLQVNYNFNMVAID-DYTPKQVGLSRILTSYIAHRREIIIAR 360 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432 S F + ++R+ I++GL+ +DE+IA+IR N+ K + + +E Q +AI+ Sbjct: 361 SKFDKEKAEKRLHIVEGLIRVLSILDEVIALIRASENKADAKENLKVSYEFSEAQAEAIV 420 Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492 L+L L + ++ E + L + + ++++ + +N + E+REVK+ F+ + Sbjct: 421 TLQLYRLTNTDIVTLREEEEELRQQITMLKAIISDERTMYNVMKRELREVKKKFANT--- 477 Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI-----RSLKSHSVDLSALHFKE 547 RR+ E++ + +IE E V ++ G++ RS + +VD L +E Sbjct: 478 --RRSELQELAETIEIDTASLIIE-EDTYVSVTRGGYVKRTSPRSFNASTVD--ELGKRE 532 Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIVT 604 D L +A TT +L+ + G P L R GE + Q L++ N++I+ Sbjct: 533 DDELIFVSNAKTTQHLLMFTNLGNLAYRPVHELADIRWKDVGEHLSQNLVNFASNEEIIY 592 Query: 605 AFVYDSTCK--LLVVSSKGNAFIVEESEIIA-NTRKGKT--FLKVSS-EEKMKLVVKVTG 658 A + D K V+S G E EI T K KT + K+ + ++ + V + Sbjct: 593 AELVDDFTKETYFAVTSLGQIKRFERQEISPWRTYKSKTAKYAKLKNVDDYVVTVAPIQL 652 Query: 659 DHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDG 695 + V +V N L FSI+ +P + S+ GV+ + KD Sbjct: 653 EDVILVTYNGYALRFSINDVPVVGSKAAGVKAMNLKDS 690 >gi|77405907|ref|ZP_00782988.1| DNA topoisomerase IV, A subunit [Streptococcus agalactiae H36B] gi|77175481|gb|EAO78269.1| DNA topoisomerase IV, A subunit [Streptococcus agalactiae H36B] Length = 819 Score = 381 bits (978), Expect = e-103, Method: Compositional matrix adjust. Identities = 234/698 (33%), Positives = 398/698 (57%), Gaps = 28/698 (4%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 N++ +SL + ER+ Y+ I+ERA+PD+RDG KPV RRI+++M++ G F F+KS Sbjct: 3 NIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGFRKS 62 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 A+ VG V+G HPHGD S+YD++VR++Q + R LI GN G++DGD AAA RYTEAR Sbjct: 63 AKSVGNVMGNFHPHGDSSIYDAMVRMSQDWKNRETLIEMHGNNGSMDGDPAAAMRYTEAR 122 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 ++++A +LQ +D++ V F +++ + EP V P+ FPNLL NG +GI+ G AT IP HN Sbjct: 123 LSEIAGYLLQDIDKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPHN 182 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 + E+ +A + +ID+P+ ++KL+E++ GPDFPTG II + ++ I ++Y G+G VR+R Sbjct: 183 LAEVIDAVVYMIDHPKAKLDKLMEFLPGPDFPTGAII-QGKDEIRKAYETGKGRVAVRSR 241 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315 +E + G I+VTEIPY+V KS L+++I ++ + ++P + ++RDES D + Sbjct: 242 TAIETLKGGKKQIIVTEIPYEVNKSVLVKRIDDVRVNNKVPGIAEVRDESDRDGLRIAIE 301 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 + D +++ +F +D++ + NM + P+ + L IL ++AHRRE++ R Sbjct: 302 LKKEADETIVLNYLFKYTDLQVNYNFNMVAID-DYTPKQVGLSRILTSYIAHRREIIIAR 360 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432 S F + ++R+ I++GL+ +DE+IA+IR N+ K + + +E Q +AI+ Sbjct: 361 SKFDKEKAEKRLHIVEGLIRVLSILDEVIALIRASENKADAKENLKVSYEFSEAQAEAIV 420 Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492 L+L L + ++ E + L + + ++++ + +N + E+REVK+ F+ + Sbjct: 421 TLQLYRLTNTDIVTLREEEEELRQQITMLKAIISDERTMYNVMKRELREVKKKFANT--- 477 Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI-----RSLKSHSVDLSALHFKE 547 RR+ E++ + +IE E V ++ G++ RS + +VD L +E Sbjct: 478 --RRSELQELAETIEIDTASLIIE-EDTYVSVTRGGYVKRTSPRSFNASTVD--ELGKRE 532 Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIVT 604 D L +A TT +L+ + G P L R GE + Q L++ N++I+ Sbjct: 533 DDELIFVSNAKTTQHLLMFTNLGNLAYRPVHELADIRWKDVGEHLSQNLVNFASNEEIIY 592 Query: 605 AFVYDSTCK--LLVVSSKGNAFIVEESEIIA-NTRKGKT--FLKVSS-EEKMKLVVKVTG 658 A + D K V+S G E EI T K KT + K+ + ++ + V + Sbjct: 593 AELVDDFTKETYFAVTSLGQIKRFERQEISPWRTYKSKTAKYAKLKNVDDYVVTVAPIQL 652 Query: 659 DHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDG 695 + V +V N L FSI+ +P + S+ GV+ + KD Sbjct: 653 EDVILVTYNGYALRFSINDVPVVGSKAAGVKAMNLKDS 690 >gi|289705901|ref|ZP_06502280.1| DNA gyrase, A subunit [Micrococcus luteus SK58] gi|289557386|gb|EFD50698.1| DNA gyrase, A subunit [Micrococcus luteus SK58] Length = 898 Score = 381 bits (978), Expect = e-103, Method: Compositional matrix adjust. Identities = 230/629 (36%), Positives = 364/629 (57%), Gaps = 32/629 (5%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 + V+ V L ++ YL YA++ I RA+PD+RDG KPVHRR+++AM + G AF K Sbjct: 42 DKVEPVDLESEMKRSYLDYAMAVIVGRALPDVRDGLKPVHRRVLYAMYDGGYRPDRAFNK 101 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 SAR+VG+V+G HPHGD ++YD+LVRL Q +VQRYPL GQGNFG+ D AAA RYTE Sbjct: 102 SARVVGDVMGNYHPHGDTAIYDALVRLIQDWVQRYPLALGQGNFGSPGNDGAAAQRYTET 161 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 +M +A +++ +DED VD +D Y+ + EPVV P+++PNLL NG+SGIAVGMAT+IP H Sbjct: 162 KMAPLAMEMVRDIDEDTVDMQDNYDGKQQEPVVLPARYPNLLVNGSSGIAVGMATNIPPH 221 Query: 195 NVQEICEAALALIDNPEISIEKLLEYII----GPDFPTGGIIVESRESIVESYRLGRGGF 250 N++E+ +++PE + E+LLE ++ GPDFPTG I+ R+ I E YR GRG Sbjct: 222 NMREVAAGVQWYLEHPEATREELLEALLARVHGPDFPTGAQIL-GRKGIEEVYRTGRGPI 280 Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV- 309 +RA VEE+ +G C+VVTE+PY L KIAE++ +I + D+RDE++ Sbjct: 281 TMRAVVNVEEI-QGRTCLVVTELPYMTNPDNLAAKIAEMVRDGKINGIADMRDETSGRTG 339 Query: 310 -RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368 R+V+ K ++ +++ +++ +++++ F NM L G VP+ + LDG + W+ H+ Sbjct: 340 QRLVIVLKRDAV-AKVVLNNLYKHTELQSNFSANMLALVDG-VPRTLSLDGFVHHWVKHQ 397 Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTE 425 +V+ RR++FR + + R IL+GLL A +DE+IA IR + D + + + + Sbjct: 398 IDVIVRRTAFRKRKAEERAHILRGLLKALDMLDEVIATIRRSASADVAREALKELLDIDD 457 Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485 Q AIL ++LR L LE +I+ E D+L+A+ + + +L S ++Q I+ E+ EI Sbjct: 458 VQAQAILQMQLRQLAALESQKIQDEYDDLMAKIAEYNRILESPQRQREVIS---EELAEI 514 Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHS 537 +K D RRT D + + +I +E + V I+ G++ RS Sbjct: 515 VAKHGD--DRRTEIMAGFDGDMSI--EDLIPEEEMVVSITRGGYVKRTRIDQYRSQARGG 570 Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEAIQLLID 595 + + D ++ L T +L + G+ Y + LL +GR G+ + L+ Sbjct: 571 KGVRGATLRGDDVVEHLLTVSTHHWLLFFTNFGRVYRIKTYELLEAGRDAKGQHVANLLA 630 Query: 596 LNHNQDI--VTAFVYDSTCKLLVVSSKGN 622 ++ I + V LV++++G Sbjct: 631 FQPDERIAQIQPLVDYGRAPYLVLATRGG 659 >gi|326335578|ref|ZP_08201765.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325692344|gb|EGD34296.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 840 Score = 381 bits (978), Expect = e-103, Method: Compositional matrix adjust. Identities = 234/667 (35%), Positives = 385/667 (57%), Gaps = 49/667 (7%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 E + +++ ++ Y+ Y++S I RA+PD+RDG KPVHRR++ M E+G+ +KK Sbjct: 5 EKLIPINIEDQMKSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLFGMHELGVRSNTPYKK 64 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 SARIVGEV+GK HPHGD SVYD++VR+AQ + RY L+ GQGNFG+IDGDS AA RYTEA Sbjct: 65 SARIVGEVLGKYHPHGDSSVYDTMVRMAQDWNMRYMLVDGQGNFGSIDGDSPAAMRYTEA 124 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 RM ++AE +L ++++ VD R +++ EP V P++ PNLL NG +GIAVGMAT++P H Sbjct: 125 RMRRMAEDMLIDIEKETVDHRLNFDDTLEEPTVLPTRIPNLLVNGAAGIAVGMATNMPPH 184 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 N+ E+ + +A ++N I+I++L+EYI PDFPTGG I + + E+++ GRG +R Sbjct: 185 NLSEVVDGIVAYLENQNITIDELIEYIKAPDFPTGGTIY-GYDGVREAFKTGRGRIIIRG 243 Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE-DVRIVL 313 + EEV CI+VTEIPYQV K+ ++++ A+L+ ++ + D+ DE+ + +RIV Sbjct: 244 KAHFEEVDNRD-CIIVTEIPYQVNKALMVKQTADLVKEGKLDGIADVFDETGKGGMRIVY 302 Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373 K ++ P++++ ++F + +++ F +N L GR P+ + L ++ ++ HR +V++ Sbjct: 303 VLKKDAI-PNVVLNNLFKHTPLQSSFSVNNIALVNGR-PEQLNLKDLIYHFVEHRHDVVY 360 Query: 374 RRSSFRMQAIDRRVEILKGLL--IAYLN-IDEIIAIIRNEDKP---KPVMVSRFSLTENQ 427 RR+ + ++ + IL+G + IA + +D I IIR+ D P K ++ F L+E Q Sbjct: 361 RRTEYELKKAKEKAHILEGYMKVIATQDTLDRAIYIIRHSDNPQIAKEELIKEFELSEIQ 420 Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487 AIL+LRL L +E +I+ E + ++A ++ +L +++ I E+ EVK + Sbjct: 421 SQAILDLRLARLTGMELNKIREEYEQIMALIMDLEDILAHKERRTEIIKNELIEVKAKY- 479 Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR-----SLKSHS---VD 539 G R + E S D + + +I E + + ISN G+I+ K+ + V Sbjct: 480 -----GDDRRSIIEYSGGDIS--MEDIIPNEQVVITISNAGYIKRTPVNEYKTQARGGVG 532 Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKA-----YTLPAGNLLSGRG-HGEAIQLL 593 A ++ D ++ +L + GK Y +P G GR G AIQ L Sbjct: 533 QKASATRDKDFIEYLFVGTNHQYMLFFTEKGKCFWLRVYEIPEG----GRNTKGRAIQNL 588 Query: 594 IDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG---KTFLKVSSEEKM 650 I+++ ++D V AF+ K + + +I T+KG KT L+ S + Sbjct: 589 INID-SEDNVKAFICTQDLK--------DQEYINSHYVIMATKKGIIKKTALEQYSRPRQ 639 Query: 651 KLVVKVT 657 +V +T Sbjct: 640 NGIVAIT 646 >gi|33861619|ref|NP_893180.1| DNA gyrase subunit A [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|33634196|emb|CAE19522.1| DNA gyrase/topoisomerase IV, subunit A [Prochlorococcus marinus subsp. pastoris str. CCMP1986] Length = 867 Score = 381 bits (978), Expect = e-103, Method: Compositional matrix adjust. Identities = 257/725 (35%), Positives = 406/725 (56%), Gaps = 48/725 (6%) Query: 4 DNISNSNTLVEEN---VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60 D + + N+ + EN + LR + YL YA+S I RA+PD RDG KPVHRRI++A Sbjct: 3 DIVDSENSGLSENNDRIIQTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYA 62 Query: 61 MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120 M E+GL G ++K AR+VGEV+GK HPHGD +VYD+LVR+AQ F R PLI G GNFG+ Sbjct: 63 MYELGLTSGRPYRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRMPLIDGHGNFGS 122 Query: 121 IDGDSAAAYRYTEARMTQVA-ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANG 179 +D D AA RYTE+R+ + E +L+ ++ + VDF D ++ EP V P++ P LL NG Sbjct: 123 VDNDPPAAMRYTESRLQSLTDESLLEDIESETVDFSDNFDGSQQEPNVLPARIPQLLLNG 182 Query: 180 TSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESI 239 +SGIAVGMAT+IP HN+ E+ + A+I NP ++L E I GPDFPTGG I+ R+ I Sbjct: 183 SSGIAVGMATNIPPHNLGELIDGLKAIIKNPSTEDKELFELIKGPDFPTGGQIL-GRDGI 241 Query: 240 VESYRLGRGGFRVRARWCVEEV---GRGSW-CIVVTEIPYQVQKSRLIEKIAELIIAKRI 295 E+++ G+G +R +E++ GR +++TE+P+Q K+ LIE+IA+L+ KR+ Sbjct: 242 KETFKSGKGSITMRGVADIEQIKSPGRAEKDAVIITELPFQTNKAALIERIADLVNEKRL 301 Query: 296 PLLEDIRDESAED-VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQV 354 + DIRDES D +RIV+ K R P +++ ++F ++ ++ F N+ L G P Sbjct: 302 DGISDIRDESDRDGMRIVIELK-RDAYPQVVLNNLFKITPLQNNFSANILALVNGE-PTT 359 Query: 355 MPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NED 411 + L +L +L R E + RR+SF ++ + R I+KGLL+A +D II +IR + + Sbjct: 360 LSLRKMLDVFLEFRIETIKRRTSFLLRKAEERDHIIKGLLLALNAMDNIINLIRSAKDTN 419 Query: 412 KPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQ 471 + + + L+ Q DAIL ++LR L LE +IKSE D L + ++LN K++ Sbjct: 420 SAREQLQNDHELSVIQADAILQMQLRRLTALEADKIKSEHDELTKKITDYKNILND-KER 478 Query: 472 WNQIAC-EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI 530 N+I E+ ++ E FS R+T E+ +I E V+++ G++ Sbjct: 479 INEIILEELSKIDERFSSP-----RKT---EILNLGGGLDDIDLIANERSVVLLTTAGYL 530 Query: 531 R--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL-L 581 + S S + ++ D +K+ + + D +LL S G AY LPA + + Sbjct: 531 KRMPVSEFESTSRGSRGKAGTKNQQDDEVKLFISCNDHDTLLLFSDRGVAYALPAYRVPM 590 Query: 582 SGRGH--GEAIQLLIDLNHNQ--DIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRK 637 S R ++QLL Q +V+ +D+ C LL+++ G FI + + Sbjct: 591 SSRTAKGTPSVQLLPIPREEQITSLVSVDSFDNECYLLMLTKAG--FIKRTPLSAFSKVR 648 Query: 638 GKTFLKVSSEEKMKLV---VKVTGDHVAVVGENRKLLI-FSID--QIPEMSR-GKGVRLQ 690 + ++ EE L + GD V ++G +R + I F +D ++ + R +GV+ Sbjct: 649 SNGLIAINLEEGDALTWVRLSTEGDSV-LIGSSRGMTIHFRLDTNELRPLGRTARGVKSM 707 Query: 691 SYKDG 695 + K+G Sbjct: 708 NLKEG 712 >gi|282863314|ref|ZP_06272373.1| DNA gyrase, A subunit [Streptomyces sp. ACTE] gi|282561649|gb|EFB67192.1| DNA gyrase, A subunit [Streptomyces sp. ACTE] Length = 871 Score = 381 bits (978), Expect = e-103, Method: Compositional matrix adjust. Identities = 227/627 (36%), Positives = 360/627 (57%), Gaps = 35/627 (5%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 V+ V L ++ YL YA+S I RA+PD+RDG KPVHRR+++AM + G F K A Sbjct: 23 VEPVGLETEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMYDGGYRPEKGFYKCA 82 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+V+G HPHGD S+YD+LVRLAQ + R PL+ GNFG+ D AAA RYTE +M Sbjct: 83 RVVGDVMGTYHPHGDSSIYDALVRLAQHWSMRMPLVDSNGNFGSPGNDPAAAMRYTECKM 142 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 ++ +++ +DE+ VDF+D Y+ + EP V P++FPNLL NG++GIAVGMAT+IP HN+ Sbjct: 143 MPLSMEMVRDIDEETVDFQDNYDGRNQEPTVLPARFPNLLVNGSAGIAVGMATNIPPHNL 202 Query: 197 QEICEAALALIDNPEISIEKLLEYII----GPDFPTGGIIVESRESIVESYRLGRGGFRV 252 +E+ A +++PE S ++LL+ +I GPDFPTG ++V R I ++YR GRG + Sbjct: 203 REVAAGAQWYLEHPEASPDELLDALIERIKGPDFPTGALVV-GRNGIEDAYRTGRGSITM 261 Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV--R 310 RA VEE+ + C+VVTE+PYQ L +KIA+L+ +I + D+RDE++ R Sbjct: 262 RAVVAVEEI-QNRQCLVVTELPYQTNPDNLAQKIADLVKDGKIGGIADVRDETSSRTGQR 320 Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370 +V+ K R +++ +++ +D++T F NM L G VP+ + +D ++ W+ H+ E Sbjct: 321 LVVVLK-RDAVAKVVLNNLYKHTDLQTNFGANMLALVDG-VPRTLSIDAFIRHWVTHQIE 378 Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQ 427 V+ RR+ FR++ + R IL+GLL A IDE+IA+IR + + ++ + E Q Sbjct: 379 VIVRRTRFRLRKAEERAHILRGLLKALDAIDEVIALIRRSNTVEIAREGLMGLLEIDEIQ 438 Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487 +AIL ++LR L LE +I +E D L A+ ++ +++L S + Q ++ E+ + + F Sbjct: 439 ANAILEMQLRRLAALERQKITAEHDELQAKIDQYNAILASPELQRKIVSEELAAIVDKFG 498 Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVD 539 RR+ D + + +I +E I V IS G++ RS K Sbjct: 499 DD-----RRSKLVPFE-GDMSV--EDLIAEEDIVVTISRGGYVKRTKTDDYRSQKRGGKG 550 Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEAIQLLIDLN 597 + +E D + + T +L + G+ Y A L +GR G+ + L+ Sbjct: 551 VRGTKLREDDIVDHFFVSTTHHWLLFFTNKGRVYRAKAYELPDAGRDARGQHVANLLAFQ 610 Query: 598 HNQDIVTAFV---YDSTCKLLVVSSKG 621 ++ I YD+ LV+++KG Sbjct: 611 PDEQIAQILAIRDYDA-APYLVLATKG 636 >gi|167570796|ref|ZP_02363670.1| DNA gyrase subunit A [Burkholderia oklahomensis C6786] Length = 850 Score = 381 bits (978), Expect = e-103, Method: Compositional matrix adjust. Identities = 225/615 (36%), Positives = 347/615 (56%), Gaps = 72/615 (11%) Query: 26 LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85 + + YL YA+S I RA+PD+RDG KPVHRR++ AM E+ D+ +KKSARIVG+VIGK Sbjct: 1 MRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELNNDWNRPYKKSARIVGDVIGK 60 Query: 86 LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145 HPHGD +VYD++VR+AQ F RY L+ GQGNFG++DGD+AAA RYTE RM ++ +L Sbjct: 61 YHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAKIGHELLA 120 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 +D++ VDF Y+ + +P++ PS+ PNLL NG+SGIAVGMAT+IP HN+ E+ +A L Sbjct: 121 DIDKETVDFGPNYDGSEMQPLILPSRIPNLLINGSSGIAVGMATNIPPHNLNEVVDACLY 180 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265 L++NP+ S+++L+E I PDFPT GII + + YR GRG +RA EE+ RG Sbjct: 181 LLNNPQASVDELIEIIPAPDFPTAGIIY-GVAGVRDGYRTGRGRVVMRATTHFEEIDRGQ 239 Query: 266 -WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDL 324 I+V E+PYQV K L+E+IAEL+ K++ + DIRDES + V+ R P++ Sbjct: 240 RMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKRGEVPEV 299 Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384 ++ +++ + ++ F +NM L + P+++ L IL+ +L+HRREVL RR+ + ++ Sbjct: 300 VLNNLYKATQLQDTFGMNMVAL-VDNQPKLLNLKEILQCFLSHRREVLTRRTVYELRKAR 358 Query: 385 RRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV-----------------MVSR------- 420 R +L+GL +A NID+ IAII+ P P+ M++R Sbjct: 359 ERGHVLEGLAVALANIDDFIAIIKAAPTP-PIAKQELMAKSWDSSLVREMLTRAETENAA 417 Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457 + L++ Q IL +RL+ L LE+ +I E +++A+ Sbjct: 418 AGGREAYRPEGLSPAFGMQGDGFYRLSDTQAQEILQMRLQRLTGLEQDKIIGEYRDVMAQ 477 Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517 + +L ++ I E+ VK + G R + E++ + T + +I Sbjct: 478 IADLLDILARPERITVMIGEELNAVK------VEFGDARRSKIELNATELNT--EDLITP 529 Query: 518 EPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD 569 + + V +S+ G++ R+ K A KE D ++ A+T D IL S Sbjct: 530 QDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYILCFSNR 589 Query: 570 G-----KAYTLPAGN 579 G K Y +P G+ Sbjct: 590 GRVYWVKVYEVPQGS 604 >gi|269793365|ref|YP_003312820.1| DNA gyrase subunit A [Sanguibacter keddieii DSM 10542] gi|269095550|gb|ACZ19986.1| DNA gyrase subunit A [Sanguibacter keddieii DSM 10542] Length = 883 Score = 380 bits (977), Expect = e-103, Method: Compositional matrix adjust. Identities = 240/659 (36%), Positives = 371/659 (56%), Gaps = 64/659 (9%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 +++V L+ ++ YL YA+S I RA+P++RDG KPVHRR+++AM + G AF K + Sbjct: 27 IQSVDLQLEMQRSYLDYAMSVIVGRALPEVRDGLKPVHRRVLYAMYDGGYRPDRAFSKCS 86 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+V+GK HPHGD ++YD+LVRL Q + RYPL++GQGNFG+ D AAA RYTE RM Sbjct: 87 RVVGDVMGKFHPHGDTAIYDALVRLVQDWSLRYPLVAGQGNFGSPGNDPAAAPRYTECRM 146 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 +A +++ +D+D VDF+D Y+ EP + PS+FPNLL NG+SGIAVGMAT+IP HN+ Sbjct: 147 APIAMEMVRDIDKDTVDFQDNYDGRTQEPSILPSRFPNLLVNGSSGIAVGMATNIPPHNL 206 Query: 197 QEICEAALALIDNPEISIEKLLEYII----GPDFPTGGIIVESRESIVESYRLGRGGFRV 252 +E+ E +D+P+ S E++L+ +I GPDFPTG I+ R I ++YR GRG + Sbjct: 207 REVAEGVQWYLDHPDASPEEVLDSLIRIIKGPDFPTGATILGHR-GIEDAYRTGRGSITM 265 Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV--R 310 RA VEE+ + C+VVTE+PYQV L KIAEL+ R+ + DIRDE++ R Sbjct: 266 RAIVNVEEI-QNRICLVVTELPYQVNPDTLALKIAELVKDGRVQGIADIRDETSGRTGQR 324 Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370 +V+ K ++ +++ +++ + ++ F NM L G VP+ + +D ++ W+AH+ E Sbjct: 325 LVIVLKRDAV-AKVVLNNLYKHTQLQDNFGANMLALVDG-VPRTLSIDAFIRHWVAHQLE 382 Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQ 427 V+ RR++F ++ + ++ I +G L A +D++IA+IR + D+ + ++ + E Q Sbjct: 383 VIVRRTAFLLREAESKIHIFRGYLKALDRLDDVIALIRRSPDADRARQGLIEMLDIDEIQ 442 Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487 AILN++LR L L+ +I E D L E + +L +Q QI + E+ E+ + Sbjct: 443 ATAILNMQLRRLAALQRQEIIDEHDKLEKEILEYQDILAKESRQ-RQIVSD--ELNELVA 499 Query: 488 KSTDLGRRRTTFC----EVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV----- 538 K D RRTT EVS D +I +E + V I+ G+ + +S + Sbjct: 500 KYGD--ERRTTVLPHAGEVSMED-------LIAEEEMVVTITRGGYAKRTRSDNYRAQKR 550 Query: 539 ---DLSALHFKEGDSLKIALHAHTTDRILLLSTD------GKAYTLPAG----------N 579 + +E D + TT LL T+ KAY LP G N Sbjct: 551 GGKGVRGAQLREDDIVD-HFFVTTTHHWLLFFTNLGRVYRAKAYELPEGGRDAKGQHVAN 609 Query: 580 LLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG 638 LL+ + GE I ++DL YD L++ + +G SE +N G Sbjct: 610 LLAFQ-PGEKIAQVLDLRD---------YDVADYLVLATRRGTVKKTRLSEYDSNRSGG 658 >gi|260752815|ref|YP_003225708.1| DNA gyrase subunit A [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|258552178|gb|ACV75124.1| DNA gyrase, A subunit [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 925 Score = 380 bits (977), Expect = e-103, Method: Compositional matrix adjust. Identities = 257/748 (34%), Positives = 386/748 (51%), Gaps = 71/748 (9%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 ++ VS+ ++ YL YA+S I RA+PD+RDG KPVHRRI+ A E G G ++KS Sbjct: 41 DISPVSIIDEMKSSYLDYAMSVIVSRALPDVRDGLKPVHRRILFASQEGGFVPGHPYRKS 100 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 A+IVGEV+G HPHGD ++Y +L RL Q + R PLI GQGNFG++D D AA RYTEAR Sbjct: 101 AKIVGEVMGNFHPHGDSAIYMALARLTQDWSMRVPLIDGQGNFGSMDPDGPAAMRYTEAR 160 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 ++ A ++L +D D VDF Y+ EP V P++FPNLL NG GIAVGMAT+IP HN Sbjct: 161 LSPAAMMLLADIDRDTVDFSPNYDGSRQEPQVLPARFPNLLVNGAGGIAVGMATNIPPHN 220 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 + E+ A A I +P ISIE L+ + GPDFPTGG+++ + +Y+ GRG +R+R Sbjct: 221 LGEVLAACRAYIADPAISIEDLIHLVPGPDFPTGGVML-GQGGARSAYQNGRGSIIIRSR 279 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLF 314 + +EE IV+TEIPYQ+ KS L+EKIAE KR+ + DIRDES E VR+V+ Sbjct: 280 YNIEEKHGDRRSIVLTEIPYQIGKSALVEKIAEAAKDKRVEGISDIRDESNREGVRVVID 339 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K R PD+++ ++ + ++ FP NM L+ GR P+ M L I+ ++ R EV+ R Sbjct: 340 LK-RDATPDVVLNQLWRHTPAQSSFPANMLALNGGR-PETMSLKDIIAAFVQFREEVITR 397 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK-----------PVM------ 417 RS + + R +L G++IA N+DE++ IIRN P PV Sbjct: 398 RSKYDLFKARERAHLLLGMVIAVTNLDEVVRIIRNAPSPAEAHSELSARKWPVNDVLPYI 457 Query: 418 -----------VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466 ++L++ QVDAIL LRL L + QI EL L ++ +L Sbjct: 458 KLIEAVEDFEESGLYTLSKAQVDAILALRLSRLTAMGRDQIGEELKKLAISISELLEVLR 517 Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526 + ++ + + E V+ F+ RRT ++ A A + +IE+E + V +++ Sbjct: 518 NRERLYEIMVEEFDAVEAQFATP-----RRT---QIVAASDAIEDEDLIEREEMVVTVTH 569 Query: 527 RGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAG 578 G+I R+ S + K+ D++ T +L S GK Y L Sbjct: 570 GGYIKRTPLDTFRTQNRGGKGRSGMATKDEDAVTNLFVTCTHTPVLFFSNHGKVYRLKVW 629 Query: 579 NLLSG----RG----------HGEAIQLLIDLNHNQ-DIVTAFVYDSTCKLLVVSSKGNA 623 L G RG GE + ++ L ++ + V +T K V + +A Sbjct: 630 RLPEGAPQARGRPMVNLLPLAEGEVVSTVLPLPEDEAEWGNLHVLFATAKGSVRRNSMDA 689 Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIP--EM 681 F + + +N + F + ++ + + + D V + N K + F+ + + Sbjct: 690 F----TNVPSNGKFAIRFEEGDNDRLIGVTLLSENDDVLLATRNGKAIRFAATDVRVFQS 745 Query: 682 SRGKGVRLQSYKDGGISDVICFKICEGL 709 GVR + KDG +VI G Sbjct: 746 RTSTGVRGITLKDG--DEVISLSTLRGF 771 >gi|189218175|ref|YP_001938817.1| DNA gyrase subunit A [Methylacidiphilum infernorum V4] gi|189185033|gb|ACD82218.1| DNA gyrase subunit A [Methylacidiphilum infernorum V4] Length = 873 Score = 380 bits (977), Expect = e-103, Method: Compositional matrix adjust. Identities = 226/585 (38%), Positives = 334/585 (57%), Gaps = 52/585 (8%) Query: 30 YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89 ++ YA+S I RA+PD+RDG KP RRI+ AM E+GL K A+IVGE +G HPH Sbjct: 37 FIDYAMSVIIARALPDVRDGLKPSQRRILFAMHELGLAPNRKHLKCAKIVGETMGNFHPH 96 Query: 90 GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDE 149 GDQ++Y +LV +AQP+ R LI GQGNFG+I+GD AA RYTEAR++ L++ +D+ Sbjct: 97 GDQAIYPTLVHMAQPWAMREVLIDGQGNFGSIEGDPPAAMRYTEARLSAAGALLMADMDK 156 Query: 150 DAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDN 209 D VDF Y+E EP VFP+ FPNL+ NG +GIAVGMAT+IP HN+ E + +ALID+ Sbjct: 157 DTVDFVPNYDETRMEPSVFPASFPNLIVNGATGIAVGMATNIPPHNLSETIDGLVALIDH 216 Query: 210 PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIV 269 P +S E+LLEYI GPDFPTGG+I+ RE IV + GRG +VR VEE+ G IV Sbjct: 217 PGLSSEELLEYIKGPDFPTGGVIL-GREGIVNYFTTGRGSLKVRGEIHVEELRGGKSAIV 275 Query: 270 VTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESI 329 + EIPY V ++ L+EKI EL+ K I + DIRDES E+ R+V+ K R ++ ++ Sbjct: 276 IDEIPYNVNRASLVEKIGELVNQKVIQEIADIRDESDENTRVVIELK-RDAVAKVVANNL 334 Query: 330 FMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEI 389 + + ++T F +NM + R P+ + L +L +L HR EV+ RR+ F + R E+ Sbjct: 335 YRHTPLQTTFAVNMVAIDRLR-PKSLNLKELLSCYLDHRHEVVTRRTRFDLNKALERAEV 393 Query: 390 LKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSR------------------------FS 422 L+G LIA + E I IIR N D+ + ++ R + Sbjct: 394 LEGFLIALSRLQEFIEIIRQSSNRDEARRKLLDREFSPEWIESLGIPLDGQRMTEGAMYR 453 Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482 L+ QV+AIL+LRL L LE +I E LL + ++ +L S ++ W + E+ E+ Sbjct: 454 LSLRQVEAILDLRLYQLTGLEREKIAGEYAELLEKIKQFRLILASEEKIWAIVKAELLEI 513 Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHS--- 537 KE + G R T + A + ++ + + + +++ G+I+ SL S+ Sbjct: 514 KEKY------GNPRKTKIIPDEGEVAF--EDLVANQRVVITLTHNGFIKRTSLDSYRSQR 565 Query: 538 ------VDLSALHF---KEGDSLKIALHAHTTDRILLLSTDGKAY 573 + +S +E D ++ +A T D +L +TDG+ Y Sbjct: 566 RGGRGVIGMSTQDTGVEEEKDFVESLFNASTHDFLLFFTTDGRVY 610 >gi|16082084|ref|NP_394514.1| DNA gyrase subunit A [Thermoplasma acidophilum DSM 1728] gi|10640368|emb|CAC12182.1| DNA gyrase, subunit A (gyrA) related protein [Thermoplasma acidophilum] Length = 796 Score = 380 bits (977), Expect = e-103, Method: Compositional matrix adjust. Identities = 241/750 (32%), Positives = 411/750 (54%), Gaps = 40/750 (5%) Query: 21 SLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVG 80 ++ + + YL YA+S I RAIPD+RDG KPV RR++++M E+G+ +KK ARIVG Sbjct: 8 AVEVEIRKSYLEYAMSVIVSRAIPDVRDGLKPVQRRVLYSMRELGVTHDKPYKKCARIVG 67 Query: 81 EVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVA 140 E +GK HPHGD ++YD+LVR+AQ F RYPL+ GQGNFG+IDGDS AA RYTEAR+TQ+A Sbjct: 68 ETMGKYHPHGDMAIYDALVRMAQDFSLRYPLVDGQGNFGSIDGDSPAAMRYTEARLTQIA 127 Query: 141 ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEIC 200 E ++ +DE+ V FR ++ SEP PSK PNLL NG+SGIAVGMAT++ HN+ EIC Sbjct: 128 EDMMDDIDENTVPFRLNFDGTLSEPEYLPSKIPNLLINGSSGIAVGMATNMVPHNLTEIC 187 Query: 201 EAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEE 260 +A L +D+ + ++ LL+Y+ GPDFP GGI+ ++ ++E+YR GRG V+ E Sbjct: 188 DAILYEVDHRDSPVDDLLKYVKGPDFPGGGIVFYGKD-LIEAYRTGRGKVIVQGEVDATE 246 Query: 261 VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKNRS 319 R +++ IPY V K+ L++ IA+L + I + DI+DES + +RIV+ ++ Sbjct: 247 DRR----LIIKSIPYGVNKADLVQSIADLAKNEVIKDITDIKDESDRNGIRIVIKVRDDD 302 Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379 + P L++ ++ + +E+ + +N++ +G P++M L ++ ++ HR +V+ RRS FR Sbjct: 303 IKP-LVLNQLYEHTALESSIGI-INLVLVGNQPKLMNLKDLIDSFIDHRLDVILRRSQFR 360 Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAII---RNEDKPKPVMVSRFSLTENQVDAILNLRL 436 + R+++L G+L A +ID ++ I+ ++ D+ + + F L + Q+ AIL +RL Sbjct: 361 LDRKKERLDVLTGILTAVEHIDRVVEILKSSKDADEASSKLRNEFDLNDRQIKAILEMRL 420 Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496 + L E+ ++SE+ + AE + ++ ++ S ++ ++ EI E+++ K D R R Sbjct: 421 QRLVNTEQESVRSEIAQIQAEIKDLEEIILSEDRRIDEFKKEITEIQK---KYGDKRRSR 477 Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKS----------HSVDLSALHFK 546 F R + +I E +++S G ++ +++ V+ S K Sbjct: 478 IKF----RGITERTMEDLIPNEESLIMLSYGGLVKRVQADEYRSQRRGGKGVNTS---MK 530 Query: 547 EGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQD 601 DS+K +H + D + + G KAY +P + S A L + Sbjct: 531 TSDSIKSMIHCFSHDTVYYFTNTGRVFKSKAYEIPKKSRTSLGVSAAAFLKLAQGERVTE 590 Query: 602 IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-H 660 I+ A + L++V+ G+ + + G + + ++++ V GD + Sbjct: 591 IMKA-PPEKGYYLILVTRDGSVKKTAADPVFDSKSSGLKIITLEDDDELVSVSYTAGDKN 649 Query: 661 VAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719 + V+ K +F+ +I E R GVR +G + + F + + + + Y Sbjct: 650 MFVLSSKGKASVFNTSEIRETGRTSMGVRSMRLNEGD-TILTAFVVNSDEDILSISEKGY 708 Query: 720 NRSENDLLGWLGKRGGVGSLVPKGFPRSGK 749 + N + RG G +V + R+G+ Sbjct: 709 GKRTNISEFPIHHRGSSGVMVYRDTERTGR 738 Score = 39.7 bits (91), Expect = 1.9, Method: Compositional matrix adjust. Identities = 53/219 (24%), Positives = 89/219 (40%), Gaps = 14/219 (6%) Query: 484 EIFSKS-TDLGRRRTTFCEVSRADKAT-LQQAMIEKEPITVVISNRGWIRS------LKS 535 EI KS T LG F ++++ ++ T + +A EK ++++ G ++ S Sbjct: 563 EIPKKSRTSLGVSAAAFLKLAQGERVTEIMKAPPEKGYYLILVTRDGSVKKTAADPVFDS 622 Query: 536 HSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLID 595 S L + ++ D L + + +LS+ GKA + ++ + Sbjct: 623 KSSGLKIITLEDDDELVSVSYTAGDKNMFVLSSKGKASVFNTSEIRETGRTSMGVRSM-R 681 Query: 596 LNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655 LN I+TAFV +S +L +S KG SE + R + E+ V Sbjct: 682 LNEGDTILTAFVVNSDEDILSISEKGYGKRTNISEFPIHHRGSSGVMVYRDTERTGRVSH 741 Query: 656 VTG----DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRL 689 D V +V N K + +IPE SR GV+L Sbjct: 742 AIPVRDEDEVILVSMNEKTIRIKASEIPETSRVTSGVKL 780 >gi|302520523|ref|ZP_07272865.1| DNA gyrase, A subunit [Streptomyces sp. SPB78] gi|302429418|gb|EFL01234.1| DNA gyrase, A subunit [Streptomyces sp. SPB78] Length = 874 Score = 380 bits (977), Expect = e-103, Method: Compositional matrix adjust. Identities = 230/626 (36%), Positives = 354/626 (56%), Gaps = 33/626 (5%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 V+ V L ++ YL YA+S I RA+PD+RDG KPVHRR+++AM + G F K A Sbjct: 31 VEPVGLETEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMYDGGYRPEKGFYKCA 90 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+V+G HPHGD S+YD+LVRLAQ + R PL+ GNFG+ D AAA RYTE +M Sbjct: 91 RVVGDVMGNYHPHGDSSIYDALVRLAQTWAMRMPLVDSNGNFGSPGNDPAAAMRYTECKM 150 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 ++ +++ +DE+ VDF D Y+ EP V P++FPNLL NG++GIAVGMAT+IP HN+ Sbjct: 151 APLSMEMVRDIDEETVDFSDNYDGRSQEPDVLPARFPNLLINGSAGIAVGMATNIPPHNL 210 Query: 197 QEICEAALALIDNPEISIEKLLEYII----GPDFPTGGIIVESRESIVESYRLGRGGFRV 252 +E+ A + +PE S E+LL+ +I GPDFPTG ++V R+ I E+YR GRG + Sbjct: 211 REVAAGAQWYLAHPEASNEELLDALIERIKGPDFPTGALVV-GRKGIEEAYRTGRGSIPM 269 Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV--R 310 RA VEE+ + C+VVTE+PYQV L +KIA+L+ +I + D+RDE++ R Sbjct: 270 RAVVEVEEI-QNRQCLVVTELPYQVNPDNLAQKIADLVKDGKIGGIADVRDETSSRTGQR 328 Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370 +V+ K ++ +++ ++F +D++T F NM L G VP+ + LD ++ W+ H+ E Sbjct: 329 LVVVLKRDAV-AKVVLNNLFKHTDLQTNFSANMLALVDG-VPRTLSLDAFIRHWVTHQIE 386 Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQ 427 V+ RR+ FR++ + R IL+GLL A IDE+IA+IR D + ++ + E Q Sbjct: 387 VIVRRTRFRLRKAEERAHILRGLLKALDAIDEVIALIRRSDTVEDARGGLMGLLEIDEIQ 446 Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487 +AIL ++LR L LE ++ E D L ++ ++L S ++Q + E+ ++ + F Sbjct: 447 ANAILEMQLRRLAALERQKLVQEHDELQRRIDEYKAILASPERQRQIVHDELGQIVDKFG 506 Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVD 539 RR+ D + +I +E I V IS G++ RS K Sbjct: 507 DD-----RRSQLVPF---DGDMSMEDLIAEEDIVVTISRSGYVKRTRTDDYRSQKRGGKG 558 Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEAIQLLIDLN 597 + KE D + T +L + G+ Y A L +GR G+ + L+ Sbjct: 559 VRGAKLKEDDIVDHFFVTTTHHWLLFFTNKGRVYRAKAYELPDAGRDARGQHVANLLAFQ 618 Query: 598 HNQDI--VTAFVYDSTCKLLVVSSKG 621 ++ I + A LV+++KG Sbjct: 619 PDESIAQILAIKDYEAAPYLVLATKG 644 >gi|83319625|ref|YP_424037.1| DNA gyrase, A subunit [Mycoplasma capricolum subsp. capricolum ATCC 27343] gi|83283511|gb|ABC01443.1| DNA gyrase, A subunit [Mycoplasma capricolum subsp. capricolum ATCC 27343] Length = 795 Score = 380 bits (977), Expect = e-103, Method: Compositional matrix adjust. Identities = 254/747 (34%), Positives = 405/747 (54%), Gaps = 53/747 (7%) Query: 35 LSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSV 94 +S I RA+PDL+DG KPVHRRII+AM+++G+ KKSARIVGEVIGK HPHGD +V Sbjct: 1 MSVIVSRALPDLKDGLKPVHRRIIYAMNDLGITSDKPHKKSARIVGEVIGKYHPHGDSAV 60 Query: 95 YDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDF 154 Y+++VR+AQ F RYPLI G GNFG+IDGD AAA RYTEAR+ +++ +++ +D D V F Sbjct: 61 YETMVRMAQEFSYRYPLIDGHGNFGSIDGDGAAAMRYTEARLAKISNYLIKDIDMDTVPF 120 Query: 155 RDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISI 214 D Y+ + EP PNLL NGT GIAVGMATSIP HN++E+ A A IDN +I+I Sbjct: 121 IDNYDASEHEPAYLTGYLPNLLVNGTMGIAVGMATSIPPHNLKEVVSAINAYIDNNDITI 180 Query: 215 EKLLE-YIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEI 273 +++L+ +I+GPDFPTG ++ + + E Y+ GRG +RA+ EE + VVTEI Sbjct: 181 DEILDNHILGPDFPTGALMTNGSK-MREGYKTGRGSVIIRAKIDFEE-NKKHDRFVVTEI 238 Query: 274 PYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLFPKNRSLDPDLLMESIFML 332 PYQ K+++IEKIAEL+ K I + DIRDES E +RI++ K + +PD+++ ++ Sbjct: 239 PYQTNKAKIIEKIAELVKDKTIEGIFDIRDESNYEGIRIIIELK-KDANPDVVLSKLYKY 297 Query: 333 SDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKG 392 + +++ F + + +P ++ L I+K ++ + V+ +RS F + +R IL+ Sbjct: 298 TALQSSFSI-NLLTLNNNLPVLLDLKTIIKNYVEFQVNVIIKRSIFEKNKLTKRYHILEA 356 Query: 393 LLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKS 449 L IA N+D++I II+N ++ K + ++++ E Q AIL++RL+ L LE +I Sbjct: 357 LHIALDNVDDVINIIKNSKTSEEAKIQLTNKYNFDEEQNKAILDMRLQRLVGLERDKITL 416 Query: 450 ELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKAT 509 E+ N+ +D L+N+ ++Q N + ++ E+ + F + RRT + + Sbjct: 417 EMTNIKERLTYLDILINTKEEQNNVLKNQLNEIADKFGDN-----RRTELIDEELIN--I 469 Query: 510 LQQAMIEKEPITVVISNRGWIRSLKSHSVDLS-------ALHFKEGDSLKIALHAHTTDR 562 + +I +++S G+IR + + +++ + D + IA D Sbjct: 470 EDEELIPDLKWMILLSQEGYIRRINPDEFRIQKRGGRGVSVNAEPNDPIDIATMGKAKDW 529 Query: 563 ILLLSTDGKAYT---------------LPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFV 607 +L + GK Y LP N L+ + I ++ L +N++ F Sbjct: 530 VLFFTNSGKVYRTKLYNIRSYSRTARGLPIVNFLNDLTSEDKITAILPLRNNKE---KFN 586 Query: 608 YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGE 666 Y L V+ KG + SE R GK + + +++ V TG D + + E Sbjct: 587 Y-----LTFVTQKGMIKRTKISEFENINRNGKKAINLRENDQLVSVFATTGQDTIFIANE 641 Query: 667 NRKLLIFSIDQIPEMSR-GKGVRLQSYK--DGGISDVICFKICEGLTWIDSAGRSYNRSE 723 + K++ + SR G GVR + D + + FK+ +T + + G Sbjct: 642 SGKVIRIKESVVNPQSRVGSGVRALKLETNDVVVGAISSFKLTH-ITTVSNKGLFKKTPI 700 Query: 724 NDLLGWLGKRGGVGSLVPKGFPRSGKF 750 +D + R G G V R+GKF Sbjct: 701 DDY--RISGRNGKGIKVMNLNQRTGKF 725 >gi|289706938|ref|ZP_06503273.1| DNA gyrase, A subunit [Micrococcus luteus SK58] gi|289556263|gb|EFD49619.1| DNA gyrase, A subunit [Micrococcus luteus SK58] Length = 898 Score = 380 bits (977), Expect = e-103, Method: Compositional matrix adjust. Identities = 230/629 (36%), Positives = 364/629 (57%), Gaps = 32/629 (5%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 + V+ V L ++ YL YA++ I RA+PD+RDG KPVHRR+++AM + G AF K Sbjct: 42 DKVEPVDLESEMKRSYLDYAMAVIVGRALPDVRDGLKPVHRRVLYAMYDGGYRPDRAFNK 101 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 SAR+VG+V+G HPHGD ++YD+LVRL Q +VQRYPL GQGNFG+ D AAA RYTE Sbjct: 102 SARVVGDVMGNYHPHGDTAIYDALVRLIQDWVQRYPLALGQGNFGSPGNDGAAAQRYTET 161 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 +M +A +++ +DED VD +D Y+ + EPVV P+++PNLL NG+SGIAVGMAT+IP H Sbjct: 162 KMAPLAMEMVRDIDEDTVDMQDNYDGKQQEPVVLPARYPNLLVNGSSGIAVGMATNIPPH 221 Query: 195 NVQEICEAALALIDNPEISIEKLLEYII----GPDFPTGGIIVESRESIVESYRLGRGGF 250 N++E+ +++PE + E+LLE ++ GPDFPTG I+ R+ I E YR GRG Sbjct: 222 NMREVAAGVQWYLEHPEATREELLEALLARVHGPDFPTGAQIL-GRKGIEEVYRTGRGPI 280 Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV- 309 +RA VEE+ +G C+VVTE+PY L KIAE++ +I + D+RDE++ Sbjct: 281 TMRAVVNVEEI-QGRTCLVVTELPYMTNPDNLAAKIAEMVRDGKINGIADMRDETSGRTG 339 Query: 310 -RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368 R+V+ K ++ +++ +++ +++++ F NM L G VP+ + LDG + W+ H+ Sbjct: 340 QRLVIVLKRDAV-AKVVLNNLYKHTELQSNFSANMLALVDG-VPRTLSLDGFVHHWVKHQ 397 Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTE 425 +V+ RR++FR + + R IL+GLL A +DE+IA IR + D + + + + Sbjct: 398 IDVIVRRTAFRKRKAEERAHILRGLLKALDMLDEVIATIRRSASADVAREALKELLDIDD 457 Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485 Q AIL ++LR L LE +I+ E D+L+A+ + + +L S ++Q I+ E+ EI Sbjct: 458 VQAQAILQMQLRQLAALESQKIQDEYDDLMAKIAEYNRILESPQRQREVIS---EELAEI 514 Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHS 537 +K D RRT D + + +I +E + V I+ G++ RS Sbjct: 515 VAKHGD--DRRTEIMAGFDGDMSI--EDLIPEEEMVVSITRGGYVKRTRIDQYRSQARGG 570 Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEAIQLLID 595 + + D ++ L T +L + G+ Y + LL +GR G+ + L+ Sbjct: 571 KGVRGATLRGDDVVEHFLTVSTHHWLLFFTNFGRVYRIKTYELLEAGRDAKGQHVANLLA 630 Query: 596 LNHNQDI--VTAFVYDSTCKLLVVSSKGN 622 ++ I + V LV++++G Sbjct: 631 FQPDERIAQIQPLVDYGRAPYLVLATRGG 659 >gi|228470207|ref|ZP_04055114.1| DNA gyrase, A subunit [Porphyromonas uenonis 60-3] gi|228308158|gb|EEK17021.1| DNA gyrase, A subunit [Porphyromonas uenonis 60-3] Length = 860 Score = 380 bits (977), Expect = e-103, Method: Compositional matrix adjust. Identities = 245/708 (34%), Positives = 404/708 (57%), Gaps = 55/708 (7%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 V + ++ Y+ Y++S I RA+PD+RDG KPVHRR++++M+E G + +K AR V Sbjct: 11 VDIEDEMKTSYIDYSMSVIVSRALPDVRDGLKPVHRRVLYSMNESGNTYNNPTRKCARAV 70 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+++GK HPHGD SVY++LVRLAQ + RYPL+ GQGNFG+IDGDS AA RYTE+R+ Q Sbjct: 71 GDIMGKYHPHGDSSVYNTLVRLAQGWNMRYPLVQGQGNFGSIDGDSPAAMRYTESRLNQF 130 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A+ +L+ +D + VDF+D ++ + EP V P + PNLL NG +GIAVGMAT++ HN+ E Sbjct: 131 AQEMLRDIDMETVDFQDNFDGDFKEPTVLPCRIPNLLINGAAGIAVGMATNMAPHNLTET 190 Query: 200 CEAALALID-NPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258 A +A ID EI++++L++Y+ PDFPTGG+I E + E++R GRG +R + + Sbjct: 191 LNACIAYIDARGEITVDELMQYVKAPDFPTGGVIY-GYEGVKEAFRTGRGRIVIRGKADI 249 Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLFPKN 317 EE I++ EIPYQV+KS ++ KIA+L+ K+I + DI DES+ + +RIV+ K Sbjct: 250 EEY-HSHERIIIREIPYQVRKSDMVAKIAQLVNEKKIDGISDISDESSNKGIRIVIDIK- 307 Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377 + + +++ ++ SD+E+ F +N L GR P+ + L ++ ++ HR +V+ RR+ Sbjct: 308 KDANAGVVLNYLYKYSDLESYFSVNNIALVNGR-PRQLNLKDLIGHFVDHRHDVVTRRAQ 366 Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVM---VSRFSLTENQVDAILNL 434 + ++ R+ IL+GL+IA +IDE+I IIR+ ++ + M + F+L+E Q AI+++ Sbjct: 367 YELRKAQERIHILEGLIIAVDHIDEVIRIIRSSEETREAMNRLMEAFNLSELQARAIVDM 426 Query: 435 RLRSLRKLEEYQIKSELDNLLAEKEKIDSL---LNSGKQQWNQIACEIREVKEIFSKSTD 491 RLR L KL+ +++ E + L KE+ID L L+ + I E RE+ E + Sbjct: 427 RLRQLTKLDIDKLQHEYNEL---KERIDYLNLFLSDINMRMELIQEECREIIEKYGDE-- 481 Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSAL 543 RR+ E+ A + + E + + IS+ G+I R+ V + Sbjct: 482 ---RRS---EIVYASEDLNPEDFYADEDMVITISHLGYIKRTPLSEFRTQTRGGVGVKGA 535 Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTL-----PAGNLLSGRGHGEAIQLLIDLNH 598 ++ D ++ A ++L + G+ Y L P G S G IQ L+DL+ Sbjct: 536 DSRDEDFVEYIYSATMHATMMLFTATGRVYWLRVFEIPEG---SKSSKGRHIQNLLDLDE 592 Query: 599 NQDIVTAF--VYDSTCKLLVVSSKGNAFIVEESEI-------IANTRK-GKTFLKVSSEE 648 ++ +TAF + + T V++ F E+ I AN RK G + + ++ Sbjct: 593 -ENRITAFLRIKNLTTDADFVNTHYLVFATEQGLIKKTLLAHYANPRKTGVRAINLRDDD 651 Query: 649 KMKLVVKVTGD-HVAVVGENRKLLIFSIDQIPEMSRG----KGVRLQS 691 ++ V G+ + + N + + F+ ++ M R +G+RL + Sbjct: 652 QVVSVALSNGNCEIFLANRNGRCVRFNEQEVRPMGRTATGVRGIRLDN 699 >gi|187927867|ref|YP_001898354.1| DNA gyrase subunit A [Ralstonia pickettii 12J] gi|187724757|gb|ACD25922.1| DNA gyrase, A subunit [Ralstonia pickettii 12J] Length = 889 Score = 380 bits (977), Expect = e-103, Method: Compositional matrix adjust. Identities = 253/730 (34%), Positives = 390/730 (53%), Gaps = 72/730 (9%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 VSL + YLAYA+S I RA+PD+RDG KPVHRR +++M E+ D+ +KKSARIV Sbjct: 11 VSLEEEMRSSYLAYAMSVIVGRALPDVRDGLKPVHRRALYSMHELNNDWNRPYKKSARIV 70 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGD +VYD++VR+AQ F RY L+ GQGNFG++DGD+AAA RYTE R++++ Sbjct: 71 GDVIGKYHPHGDTAVYDTIVRMAQNFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRLSKI 130 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A +L +D++ V+F Y+ ++EP V P++ PNLL NG+SGIAVGMAT+IP HN+ E+ Sbjct: 131 AHELLADLDKETVNFEPNYDGSETEPSVLPARIPNLLINGSSGIAVGMATNIPPHNLNEV 190 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 + L L+ NPE ++++L+E I PDFPT GII + E YR GRG +RA+ E Sbjct: 191 VDGCLHLLRNPEATVDELIELIPAPDFPTAGIIY-GISGVREGYRTGRGRVVMRAKTHFE 249 Query: 260 EVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318 ++ RG I+V E+PYQV K L+E+IAEL+ KRI + DIRDES + V+ R Sbjct: 250 DIDRGQRQAIIVDELPYQVNKRTLLERIAELVTEKRIEGISDIRDESDKSGMRVVIELKR 309 Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378 P++++ +++ + ++ F +NM L G+ P+++ L +L+ +L HRREV+ RR+ F Sbjct: 310 GEVPEVVLNNLYKNTQLQDTFGMNMVALVDGQ-PRLLNLRQMLECFLLHRREVVTRRTVF 368 Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR--------------- 420 ++ R IL+GL +A NIDE IAII+ P K +++R Sbjct: 369 DLRKARERGHILEGLAVALANIDEFIAIIKAAPTPPVAKAELMNRSWDSGLVRDMLVRAE 428 Query: 421 --------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNL 454 + L++ Q IL +RL+ L LE+ +I E + Sbjct: 429 SETSGGGAAYRPEGLLPVFGMQGDGLYRLSDTQAQEILQMRLQRLTGLEQDKIVQEYREV 488 Query: 455 LAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAM 514 +A+ + +L + +I I V+E+ + + G R + E + + T + + Sbjct: 489 MAQIADLLDIL----ARPERITAII--VEELTAIRAEFGDERRSQIEHNATELDT--EDL 540 Query: 515 IEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLL 566 I + + V +S+ G++ R+ K A KE D + A+T D IL Sbjct: 541 ITPQDLVVTLSHSGYMKSQPISEYRAQKRGGRGKQAAATKEDDWIDTLFVANTHDYILCF 600 Query: 567 STDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQD---IVTAFVYDSTCKLLVVSSKG 621 S G+ Y L + G G I + L+ + I+ +D + + +SKG Sbjct: 601 SNRGRLYWLKVWEVPQGSRNSRGRPIVNMFPLSPGEKINVILPVKQFDEQHFVFMATSKG 660 Query: 622 NAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT-GDH-VAVVGENRKLLIFSIDQIP 679 +E +N RK E + +T G H V + + K + F + + Sbjct: 661 TVKKTALTE-FSNPRKAGIIAVDLDEGDFLIGADITDGQHDVMLFSDAGKAVRFDENDVR 719 Query: 680 EMSR-GKGVR 688 M R +GVR Sbjct: 720 PMGRQARGVR 729 >gi|56751268|ref|YP_171969.1| DNA gyrase subunit A [Synechococcus elongatus PCC 6301] gi|81299065|ref|YP_399273.1| DNA gyrase subunit A [Synechococcus elongatus PCC 7942] gi|56686227|dbj|BAD79449.1| DNA gyrase A subunit [Synechococcus elongatus PCC 6301] gi|81167946|gb|ABB56286.1| DNA gyrase subunit A [Synechococcus elongatus PCC 7942] Length = 856 Score = 380 bits (977), Expect = e-103, Method: Compositional matrix adjust. Identities = 251/710 (35%), Positives = 386/710 (54%), Gaps = 41/710 (5%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 +E + LR + YL YA+S I RA+PD RDG KPVHRRI++AM E+GL F+ Sbjct: 4 QERIIQTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTPDRPFR 63 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 K AR+VGEV+GK HPHGD +VYD+LVR+AQ F R PLI G GNFG+ID D AA RYTE Sbjct: 64 KCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRSPLIDGHGNFGSIDNDPPAAMRYTE 123 Query: 134 ARMTQV-AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192 +R+ + + +LQ ++ + VDF D ++ EP V P++ P LL NG+SGIAVGMAT+IP Sbjct: 124 SRLKPLTTDGLLQDIEAETVDFSDNFDGSQQEPTVLPARLPQLLLNGSSGIAVGMATNIP 183 Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252 HN E+ +ALI NPEIS +L+ +I GPDFPTGG ++ S I ++Y G+G + Sbjct: 184 PHNPTELIAGVIALIHNPEISDRELMRHIPGPDFPTGGQVLGS-AGIRDAYLTGKGSITM 242 Query: 253 RARWCVEEV---GRGSW-CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED 308 R ++ + GR I++TE+PYQ K+ LIE+IAE++ KR+ + DIRDES D Sbjct: 243 RGVATIDTIEAPGRPVRDAIIITELPYQTNKAALIERIAEMVNEKRLEGISDIRDESDRD 302 Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368 ++ R P +++ +++ + +++ F NM L G P ++ L L+ +L R Sbjct: 303 GMRIVIELKRDAYPQVVLNNLYKQTPLQSNFSANMLALVDGE-PVLLTLKRSLEVFLDFR 361 Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAII-RNEDKP--KPVMVSRFSLTE 425 E + RR+ + ++ + R +L+GLLIA N+D II +I R+ D P K ++ + L+E Sbjct: 362 IETIERRTRYELRKAEERDHLLQGLLIALGNLDAIIELIRRSADAPRAKQELIDVYGLSE 421 Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485 Q DAIL ++LR L LE +I+ E +L E +L ++ I E+ ++++ Sbjct: 422 VQSDAILQMQLRRLTALEAEKIEQEHQDLQRRIEDYRDILARRERVLEIIETELEQLQQR 481 Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL----- 540 F + RRTT E AD +I E ++++ +G+I+ + + Sbjct: 482 FQEP-----RRTTLLE---ADGELETIDLIANEKSILLLTQQGYIKRMPVNEFTAQSRGT 533 Query: 541 ---SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLID 595 + K+ DS++ L D IL S G Y LPA + S G I L+ Sbjct: 534 RGKAGAKTKDDDSVEHFLTCCDHDNILFFSDRGVVYNLPAYRIPAASRNARGVPIVQLLP 593 Query: 596 LNHNQDI-----VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR-KGKTFLKVSSEEK 649 + + I V+AF D + LV+ ++G AN R G + +S ++ Sbjct: 594 IPREERITSIVPVSAFSDD---EYLVMLTQGGYIKKTALSAFANIRSNGLIAIALSEGDQ 650 Query: 650 MKLVVKVTGDHVAVVGENRKLLIF---SIDQIPEMSRG-KGVRLQSYKDG 695 ++ V + ++G + + I S D + + R +GVR S + G Sbjct: 651 LRWVRLAKPEDSILIGSRKGMTIHFRASHDDLRPLGRATRGVRAMSLRSG 700 >gi|120611936|ref|YP_971614.1| DNA gyrase subunit A [Acidovorax citrulli AAC00-1] gi|120590400|gb|ABM33840.1| DNA gyrase subunit A [Acidovorax citrulli AAC00-1] Length = 886 Score = 380 bits (977), Expect = e-103, Method: Compositional matrix adjust. Identities = 272/811 (33%), Positives = 421/811 (51%), Gaps = 95/811 (11%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 +SL + YL YA+S I RA+PD RDG KPVHRR++ AM E+ D+ +KKSARIV Sbjct: 11 ISLEEEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHELNNDWNRPYKKSARIV 70 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGD +VYD++VR+AQ F R+ L+ GQGNFG++DGD AAA RYTE R++++ Sbjct: 71 GDVIGKYHPHGDSAVYDTIVRMAQDFSLRHMLVDGQGNFGSVDGDGAAAMRYTEIRLSKI 130 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A +L +D++ VDF Y+ + EP+V PSK PNLL NG++GIAVGMAT+IP HN+ E+ Sbjct: 131 AHEMLADIDKETVDFGPNYDGSEKEPLVLPSKLPNLLVNGSAGIAVGMATNIPPHNLNEV 190 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 +A L ++ +P+ ++++++E I PDFPT GII + E YR GRG +RAR E Sbjct: 191 VDACLHVLRHPDATVDEIMEIIPAPDFPTAGIIY-GINGVKEGYRTGRGKVVMRARCHFE 249 Query: 260 EVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318 ++ RG I+V E+PYQV K L E++AEL+ K+I + I+DES + ++ R Sbjct: 250 DIDRGQRQAIIVDELPYQVNKKTLQERMAELVHEKKIEGISHIQDESDKSGMRLVIELKR 309 Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378 P++++ +++ + ++ F +NM L G+ P++ L ++ +L HRREV+ RR+ F Sbjct: 310 GEVPEVVLNNLYKQTQLQDTFGINMVALVDGQ-PRLCNLRDLIVVFLQHRREVVTRRTVF 368 Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIR------------------------------ 408 ++ R +L+GL +A NIDE I IIR Sbjct: 369 ELRKARERGHVLEGLAVALANIDEFIRIIRESPTPPIAKTELMNRAWDSQLVREMLTRTR 428 Query: 409 ------NEDKPKPVMVSR---------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453 N D +P + R + L+E Q IL +RL+ L LE+ +I +E + Sbjct: 429 ADGGVVNADDYRPEGLEREYGMGQDGLYRLSETQAQEILQMRLQRLTGLEQDKIVAEYKD 488 Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513 ++A E + +L ++ I E+ +K F + LG RR T E S D +T + Sbjct: 489 IMAVIEDLLDILAKPERVSVIIGDELTAIKAEFGQHK-LGMRR-TLVEHSAQDLST--ED 544 Query: 514 MIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565 +I + V +S+ G+I R+ K A KE D + A+T D IL Sbjct: 545 LITPTDMVVTLSHTGYIKSQPLSEYRAQKRGGRGKQATATKEDDWIDQLFIANTHDYILC 604 Query: 566 LSTDGKAYTL-----PAGNLLSGRG----------HGEAIQLLIDLNHNQDIVTA--FVY 608 S G+ Y L PAG+ S RG GE I +++ L + A FV+ Sbjct: 605 FSNRGRLYWLKVWEVPAGSRGS-RGRPIVNMFPLQEGEKINVVLPLTGDMRTFPADRFVF 663 Query: 609 DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV--VKVTGDH-VAVVG 665 +T V + + F +N RKG + V+ ++ L+ G H V + Sbjct: 664 MATSMGTVKKTALDEF--------SNPRKGG-IIAVNLDDGDYLIGAALTDGQHDVMLFS 714 Query: 666 ENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTW--IDSAGRSYNRS 722 + K + F + + + R +GVR +DG VI + E T + + Y + Sbjct: 715 DGGKGVRFDENDVRPLGRAARGVRGMMLEDG--QSVIAMLVAEDETQSVLTATENGYGKR 772 Query: 723 ENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753 + + RG G + + R+GK +++ Sbjct: 773 TSIVEYTRHGRGTKGMIAIQQSERNGKVVAA 803 >gi|284928878|ref|YP_003421400.1| DNA topoisomerase IV subunit A [cyanobacterium UCYN-A] gi|284809337|gb|ADB95042.1| DNA topoisomerase IV subunit A [cyanobacterium UCYN-A] Length = 824 Score = 380 bits (977), Expect = e-103, Method: Compositional matrix adjust. Identities = 243/703 (34%), Positives = 398/703 (56%), Gaps = 44/703 (6%) Query: 19 AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78 + SL + YL YA+S I RA+PD RDG KPVHRRI++AM E+GL F+K AR+ Sbjct: 15 STSLHTEMRHSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTPERPFRKCARV 74 Query: 79 VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138 VG+V+GK HPHGDQ+VYD+LVR+AQ F RYPL+SG GNFG+ID D AA RYTE R++ Sbjct: 75 VGDVLGKYHPHGDQAVYDALVRMAQDFSSRYPLLSGHGNFGSIDNDPPAAMRYTETRLSS 134 Query: 139 VA-ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197 +A E IL + E+ +DF + ++ EP+V P K PNLL NG +GIAVGMAT+IP HN+ Sbjct: 135 IANEGILGEIGENIIDFNNNFDNSQQEPIVLPVKIPNLLVNGCTGIAVGMATNIPPHNLG 194 Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257 E+ + +AL++ PE+S EKL + I GPDFPTGG I+++ E I ++YR G+G RVR Sbjct: 195 ELIDGLIALLEKPELSNEKLWKIIPGPDFPTGGEIIQT-EGIKDAYRDGKGIIRVRGVVS 253 Query: 258 VEEVGRGS------WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311 +E++ G +++TE+PYQV K+ IEKIA+L+ R+ + DIRDES Sbjct: 254 IEKINVGKKRRQERTALIITELPYQVNKAAWIEKIADLVNCGRLEGIADIRDESDRTGMR 313 Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371 V+ R L+++ ++ + +E F M L + PQ + L +L+E+L+ R + Sbjct: 314 VVIELKRDAVTKLVLKELYKKTALEHNFGAIMLAL-VDNQPQQLSLRSLLEEFLSFREKT 372 Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLTENQV 428 L R+ S ++ + +ILKGLLIA N+D++I I+ N K L E Q Sbjct: 373 LNRQYSNELKNCQDQSDILKGLLIALANLDKVINILCNSVDSTIAKEQFQKELGLNEKQA 432 Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488 + IL + +R L LE +I++E + L + K++ LL + K+ ++ E+R +K+ K Sbjct: 433 NGILAMPMRRLTGLERKKIETEYEELQIKVNKLEILLKNRKEFLAELKKELRSLKK---K 489 Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKE- 547 D R R + ++ + Q+ + K+PI + S + + K +++LS E Sbjct: 490 YGDKRRTRIIGKDTTKINNIETQKLDVPKQPI--LQSKKKISHTPKQLNLNLSKDSILEM 547 Query: 548 --------------GDSLKIALHAHTT---DRILLLSTDGKAYTLPAGNLLSGRGHGEAI 590 G K+ +++ ++I++++ +GKAY + ++ + Sbjct: 548 TYQGEVAWRKPEDRGFENKLLIYSEIIGEREQIIVITDNGKAYPIKILDIPYIDVQSTFL 607 Query: 591 QLLIDLNHNQD---IVTAFVYDSTCK---LLVVSSKGNAFIVEESEIIANTRKGKTFLKV 644 L+ N +D +++ F + LL+++++G ++ SE+ + T +G + +K+ Sbjct: 608 ISLLPENAQKDTKSVISIFFLTKNVENRNLLLLTNQGKIKRIQLSELNSLTNRGLSLMKL 667 Query: 645 SSEEKMKLVVKVT-GDHVAVVGENRKLLIFSI--DQIPEMSRG 684 +++ +K + V D + + + +LL F + ++IP M+R Sbjct: 668 KNDDFLKYISFVKEEDEIVIAITSGRLLRFQMKNEEIPVMNRN 710 >gi|294789626|ref|ZP_06754860.1| DNA gyrase, A subunit [Simonsiella muelleri ATCC 29453] gi|294482427|gb|EFG30120.1| DNA gyrase, A subunit [Simonsiella muelleri ATCC 29453] Length = 911 Score = 380 bits (977), Expect = e-103, Method: Compositional matrix adjust. Identities = 229/639 (35%), Positives = 356/639 (55%), Gaps = 70/639 (10%) Query: 19 AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78 AVSL +++ YL YA+S I RA+PD+RDG KPVHRR+++AM E+ ++ +A+KKSAR+ Sbjct: 15 AVSLEDEMKKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELKNNWNSAYKKSARV 74 Query: 79 VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138 VG+VIGK HPHGD +VY ++VR+AQPF RY L+ GQGNFG++DGD+AAA RYTE RM + Sbjct: 75 VGDVIGKYHPHGDSAVYQTIVRMAQPFSMRYMLVDGQGNFGSVDGDAAAAMRYTEIRMAK 134 Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198 +A +L ++ED V+F D Y+ + EP+V P++FP LL NG+ GIAVGMATSIP HN+++ Sbjct: 135 IAHEMLADIEEDTVNFGDNYDGSEREPLVLPTRFPALLVNGSEGIAVGMATSIPPHNLRD 194 Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258 L L+ PE I L++ I PDFPTG I I Y+ GRG +R++ + Sbjct: 195 TLSGCLKLLREPETDINDLIDIIKAPDFPTGATIY-GLTGIRAGYQTGRGRVVIRSKTHI 253 Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318 E +G+ S I+V EIPYQV KS+L+EKI EL+ K + + ++RDES +D ++ R Sbjct: 254 EPIGKNSEAIIVDEIPYQVNKSKLVEKIGELMREKTVEGIAELRDESDKDGTRIVIELKR 313 Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378 + + ++++ ++ L+ ++ F +NM L G+ P+++ L IL E+L HRREV+ RR+ + Sbjct: 314 NENAEVILNQLYKLTQLQDSFSINMVALVDGQ-PRLLNLKQILSEFLRHRREVVTRRTLY 372 Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSR--------------- 420 R++ I +G +A NIDE+IA+I+ D + ++SR Sbjct: 373 RLKKARAEGHIAEGKAVALSNIDEMIALIKQSVDVDSAREALLSRAWQSDLVSEMLNRSD 432 Query: 421 ---------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKE 459 + L++ Q AIL + LR+L L++ +I E L+A Sbjct: 433 LDLTMARPEWLPENRGLQSDGYWLSDEQARAILRMSLRNLTGLDQDEIIKEYKELMA--- 489 Query: 460 KIDSLLN--SGKQQWNQIACEIREVKEIFSKSTDLG-RRRTTFCEVSRADKATLQQAMIE 516 I LL+ + ++ QI + E+ + T G RR+ D A + +I Sbjct: 490 IIVDLLDILAKPERVRQIIDD-----ELVAMQTQFGDERRSEINTFGGGDIA--DEDLIP 542 Query: 517 KEPITVVISNRGWIRSLKSHSVDL--------SALHFKEGDSLKIALHAHTTDRILLLST 568 + V +++ G+I++ + A K+ D ++ A+T D ++ + Sbjct: 543 PREMVVTLTHGGYIKTRPTSDYQAQKRGGRGKQAAATKDEDFIETLFVANTHDYLMCFTN 602 Query: 569 DG-----KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602 G K Y LP G S G I +I L N+ + Sbjct: 603 LGRCHWIKVYRLPEGGRQS---RGRPINNVIQLEENEKV 638 >gi|296136328|ref|YP_003643570.1| DNA gyrase, A subunit [Thiomonas intermedia K12] gi|295796450|gb|ADG31240.1| DNA gyrase, A subunit [Thiomonas intermedia K12] Length = 868 Score = 380 bits (977), Expect = e-103, Method: Compositional matrix adjust. Identities = 231/657 (35%), Positives = 369/657 (56%), Gaps = 65/657 (9%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 +SL + YL YA+S I RA+PD+RDG KPVHRR+++AM E+ + +KKSARIV Sbjct: 11 ISLETEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELSNAWNRPYKKSARIV 70 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGDQSVYD++VR+AQ F RY L+ GQGNFG++DGD+AAA RYTE R++++ Sbjct: 71 GDVIGKYHPHGDQSVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRLSKI 130 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A +L +D++ VDF Y+ + EP++ P++ PNLL NG+SGIAVGMAT+IP HN+ E+ Sbjct: 131 AHEMLADIDKETVDFGPNYDGSEQEPLLLPARLPNLLINGSSGIAVGMATNIPPHNLGEV 190 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 +A L L+ NP +IE+L+E + PDFPT GII + + ++YR GRG +RAR E Sbjct: 191 LDACLHLLRNPGATIEELMERVPAPDFPTAGIIYGT-SGVRDAYRTGRGRVVMRARCHFE 249 Query: 260 EVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318 ++ +G I+V E+PYQV K L+E+IAEL+ K+I + I+DES + V+ R Sbjct: 250 DLEKGQRQAIIVDELPYQVNKRTLLERIAELVQEKKIEGISHIQDESDKSGMRVVIELKR 309 Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378 P++++ +++ + ++ F +NM L G+ P+++ L ++ +L+HRRE++ RR+ F Sbjct: 310 GEVPEVVLNNLYKQTQLQDTFGVNMVALVDGQ-PRLLNLQQMIAAFLSHRREIITRRTVF 368 Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV-----------------MVSR- 420 ++ R +L+GL +A N+D +I +I+ P PV M+SR Sbjct: 369 DLRKARERGHVLEGLAVALANVDRMIELIKAAPTP-PVAKERLLAQAWEPGEARAMLSRV 427 Query: 421 ----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458 + L+E Q IL +RL+ L LE+ +I SE +++ + Sbjct: 428 EGDITQFQPDDLDARYGLKPDGYYLSETQAQEILQMRLQRLTGLEQDKIVSEYKDVMEQI 487 Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518 + +L ++ I E+ ++ F G R + EV+ D + +I + Sbjct: 488 ADLLDILAKPERMTEIITTEMSALRAEF------GDARRSHIEVNAYDIDV--EDLITPQ 539 Query: 519 PITVVISNRGWIRS--LKSHSVDLS------ALHFKEGDSLKIALHAHTTDRILLLSTDG 570 + V IS+ G+++S L + A KE D ++ A+T D +L S G Sbjct: 540 DLVVTISHSGYVKSQPLAEYRAQRRGGRGKLATGTKEDDWVEQLFVANTHDMLLCFSNRG 599 Query: 571 KAYTLPA-GNLLSGRG-HGEAIQLLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGN 622 + Y + + + GRG G+ + L L + I T +D + + +++G Sbjct: 600 RVYWMKVYESPMGGRGSRGKPLVNLFPLQAGEKITTVLPVKAFDEQHYVFMATARGT 656 >gi|332638147|ref|ZP_08417010.1| DNA gyrase subunit A [Weissella cibaria KACC 11862] Length = 865 Score = 380 bits (977), Expect = e-103, Method: Compositional matrix adjust. Identities = 221/606 (36%), Positives = 353/606 (58%), Gaps = 36/606 (5%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 +K L + +L YA+S I RA+PD+RDG KPVHRRI++ M+E+G+ KKSA Sbjct: 11 IKPAKLGEQMRTSFLDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKQHKKSA 70 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 RIVG+V+GK HPHGD ++Y+S+VR+AQ F RY L+ G GNFG+IDGD AAA RYTEAR+ Sbjct: 71 RIVGDVMGKYHPHGDSAIYESMVRMAQDFSYRYMLVDGHGNFGSIDGDPAAAMRYTEARL 130 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 +++A +L+ +++D +DF D Y+ D EPVV P++FPNLL NG +GIAVGMAT+IP HN+ Sbjct: 131 SKIATEMLRDINKDTIDFADNYDGTDREPVVLPARFPNLLVNGANGIAVGMATNIPPHNL 190 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ A L++NP+++ +L+E + GPDFPTG I++ + I ++Y G+G VRA+ Sbjct: 191 GEVISAIHMLMNNPDVTTAELMEAVPGPDFPTGAIVM-GKSGIRKAYETGKGVVTVRAKV 249 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316 +E G I+VTE+PY V K++LIE+IAEL KRI + + DES + + Sbjct: 250 EIETEKSGKERIIVTELPYMVNKAKLIERIAELGREKRIEGITAVNDESDQTGYRIAIDI 309 Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376 R + +++ +++ + M+T F NM + GR P+++ L +L +L H++ V+ RR+ Sbjct: 310 RRDVSASVVLNNLYKNTLMQTGFSFNMLAVQDGR-PKLLGLKAMLVAYLEHQQIVVRRRT 368 Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAILN 433 F ++ + R IL+GL IA +ID II+IIR + K +++ ++L++ Q AIL+ Sbjct: 369 EFELRKAEARAHILEGLRIALDHIDAIISIIRGSETSEIAKNRLMTDYALSDKQAQAILD 428 Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493 +RL L LE +I+ E L+ +L ++ I E+ E++E + G Sbjct: 429 MRLVRLTGLERGKIEDEYQGLMTAIADYKDILAKPERIDEIIYTELLEIQEKY------G 482 Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DLSALHF 545 R T ++ + + +IE+E I V +++ G+I+ + + + Sbjct: 483 DERRTELQIGDV-TSIEDEDLIEEEDIIVSLTSAGYIKRMAQTEFRAQNRGGRGVQGMGV 541 Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTL---------------PAGNLLSGRGHGEAI 590 + D + + T D +L + GK Y + P NLL G GE++ Sbjct: 542 NDDDFIDQLIGTSTHDTLLFFTNAGKVYKMKGYEIPEYGRSAKGIPVVNLL-GIEAGESV 600 Query: 591 QLLIDL 596 Q +I++ Sbjct: 601 QTVINV 606 >gi|294508240|ref|YP_003572298.1| DNA gyrase subunit A [Salinibacter ruber M8] gi|294344568|emb|CBH25346.1| DNA gyrase subunit A [Salinibacter ruber M8] Length = 949 Score = 380 bits (977), Expect = e-103, Method: Compositional matrix adjust. Identities = 247/713 (34%), Positives = 383/713 (53%), Gaps = 91/713 (12%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 + V +++ ++ Y+ Y++S I RA+PD+RDG KPVHRR+++ M E+GL GA +K Sbjct: 44 DSRVIPINIEEEMKSSYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMHELGLTQGANYK 103 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSARIVGEV+GK HPHGD SVYD+LVR+AQ F RYPL GQGNFG++DGDSAAA RYTE Sbjct: 104 KSARIVGEVLGKYHPHGDSSVYDTLVRMAQHFSMRYPLADGQGNFGSVDGDSAAAMRYTE 163 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 ARMT++AE +L + ++ VD ++ ++ EP V P+ FPN+L NG GIAVGMAT IP Sbjct: 164 ARMTRIAEQMLTDIGKETVDTQENFDGTMEEPTVLPAAFPNMLVNGADGIAVGMATKIPP 223 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E +A +A ID+P+I I+ L++++ PDFPTGGII + E+Y GRG +R Sbjct: 224 HNLGETIDATVAYIDDPDIEIDNLMDHLPAPDFPTGGIIY-GYAGVYEAYHTGRGRVVMR 282 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIV 312 A+ EEV G +VVTE+PYQV KSR +E+IA+ + +RI + D+RDES D +RIV Sbjct: 283 AKMHEEEVRSGRDALVVTELPYQVNKSREVERIADRVRQERIEGIADLRDESDRDGLRIV 342 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 + K + + +++ ++ S ++ F +NM L GR PQV+ L ++ ++ HR E++ Sbjct: 343 IELK-QGANAEIVKNQVYKHSRLQDTFGVNMVALVGGR-PQVVTLKDAIRHYVDHRHEIV 400 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---------------------ED 411 RR+ + + R IL+GL +A ++D +IAIIR+ +D Sbjct: 401 VRRTEYDLAQAQDRAHILEGLTLALDHLDAVIAIIRHSPDTGTARQNLRAGRYPDALSDD 460 Query: 412 KPKPVMV-----SRFSLTENQVDAILNLRLRSLRK-------LEEYQIKS---------- 449 + + V ++ V A+L L + L E Q + Sbjct: 461 DLRTINVPLTPPGEADEEQDTVQALLGDEYEELVQQPDEGDWLTEAQANAILRLRLSRLT 520 Query: 450 --ELDNLLAEKEKI-------DSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500 E + ++ E E I +LNS ++ I E+ VKE F R T Sbjct: 521 GLEREKIIGEYEDIIEQIREYQRILNSRDRRMALIKEELLTVKERFDDE------RRTEI 574 Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLK 552 + + D ++ +IE++ + V I+N+G R+ V + +E D ++ Sbjct: 575 DYTGGDDIIIED-LIERQHVVVTITNQGLTKRTPIDTYRTQGRGGVGMRGTGKREDDFIE 633 Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQDIVTAFVYDS 610 H+ D +LL + G+ + L + G G +I+ LID++ D Sbjct: 634 HLYVCHSHDVLLLFTDKGQCFWLRPFEIPEGGRTAKGRSIRQLIDIDP----------DD 683 Query: 611 TCKLLVVSSKGN----AFIVEESEIIANTRKG---KTFLKVSSEEKMKLVVKV 656 + ++ SK N AF+ ++A TR+G KT L+ S + ++ + Sbjct: 684 RVRAVISVSKENFEDEAFL-NSHYVLAATRQGQVKKTALEAYSRPRSNGIIGI 735 >gi|302537384|ref|ZP_07289726.1| DNA gyrase subunit A [Streptomyces sp. C] gi|302446279|gb|EFL18095.1| DNA gyrase subunit A [Streptomyces sp. C] Length = 818 Score = 380 bits (977), Expect = e-103, Method: Compositional matrix adjust. Identities = 211/523 (40%), Positives = 317/523 (60%), Gaps = 15/523 (2%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 EE + + + ++ +L YA S I RA+PD RDG KPVHRRI++ M+EMGL + Sbjct: 15 EEKILDIDVVDEMQGSFLEYAYSVIYSRALPDARDGLKPVHRRIVYQMNEMGLRPDRGYV 74 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYT 132 K AR+VGEV+GKLHPHGDQS+YD+LVR+AQPF R PL+ G GNFG++ + D AA RYT Sbjct: 75 KCARVVGEVMGKLHPHGDQSIYDALVRMAQPFSMRLPLVDGHGNFGSLGNDDPPAAMRYT 134 Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192 E +M L+ + +DED VDF Y+ ++ EPV P+ +PNLL NG SGIAVGMAT++ Sbjct: 135 ECKMADATSLMTESIDEDTVDFTANYDGQEREPVALPAAYPNLLVNGASGIAVGMATNMA 194 Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252 HN+ E+ AA LI PE +E L+ ++ GPD PTGG IV I ++Y GRG F++ Sbjct: 195 PHNLGEVIAAARHLIRYPEADLEALMRFVPGPDLPTGGRIV-GLSGIKDAYANGRGTFKI 253 Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD--ESAEDVR 310 RA VE+V +VVTE+P+ V ++I KI +L+ +K++ + D++D + + +R Sbjct: 254 RATVSVEDVTARRKGLVVTELPFTVGPEKVIAKIKDLVGSKKLQGIADVKDLTDRSHGLR 313 Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370 +V+ KN P+ ++E ++ L+ ME F +N L G+ P M L +L+ +L HR E Sbjct: 314 LVIEIKN-GFHPEAVLEQLYKLTPMEESFGINNVALVDGQ-PLTMGLKELLEVYLDHRFE 371 Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQ 427 V+ RRS FR R+ +++GLL+A L+IDE+I IIR+ D + K ++ RFSL+E Q Sbjct: 372 VVRRRSEFRRGKRRDRLHLVEGLLVALLDIDEVIRIIRDSDNSAQAKERLMERFSLSEVQ 431 Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487 IL+ LR L + + +++SE D L E +++ +L S ++ E+ V + F Sbjct: 432 TQYILDTPLRRLTRFDRIELESERDRLTGEIDELTGILESDSALRKLVSAELAAVAKKFG 491 Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI 530 RRT E + A + + +P V++S+ G + Sbjct: 492 TE-----RRTVLLESAGTSVAAVPLE-VADDPCRVLLSSTGLL 528 >gi|241662455|ref|YP_002980815.1| DNA gyrase subunit A [Ralstonia pickettii 12D] gi|240864482|gb|ACS62143.1| DNA gyrase, A subunit [Ralstonia pickettii 12D] Length = 889 Score = 380 bits (977), Expect = e-103, Method: Compositional matrix adjust. Identities = 253/730 (34%), Positives = 390/730 (53%), Gaps = 72/730 (9%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 VSL + YLAYA+S I RA+PD+RDG KPVHRR +++M E+ D+ +KKSARIV Sbjct: 11 VSLEEEMRSSYLAYAMSVIVGRALPDVRDGLKPVHRRALYSMHELNNDWNRPYKKSARIV 70 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGD +VYD++VR+AQ F RY L+ GQGNFG++DGD+AAA RYTE R++++ Sbjct: 71 GDVIGKYHPHGDTAVYDTIVRMAQNFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRLSKI 130 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A +L +D++ V+F Y+ ++EP V P++ PNLL NG+SGIAVGMAT+IP HN+ E+ Sbjct: 131 AHELLADLDKETVNFEPNYDGSETEPSVLPARIPNLLINGSSGIAVGMATNIPPHNLNEV 190 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 + L L+ NPE ++++L+E I PDFPT GII + E YR GRG +RA+ E Sbjct: 191 VDGCLHLLRNPEATVDELIELIPAPDFPTAGIIY-GISGVREGYRTGRGRVVMRAKTHFE 249 Query: 260 EVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318 ++ RG I+V E+PYQV K L+E+IAEL+ KRI + DIRDES + V+ R Sbjct: 250 DIDRGQRQAIIVDELPYQVNKRTLLERIAELVTEKRIEGISDIRDESDKSGMRVVIELKR 309 Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378 P++++ +++ + ++ F +NM L G+ P+++ L +L+ +L HRREV+ RR+ F Sbjct: 310 GEVPEVVLNNLYKNTQLQDTFGMNMVALVDGQ-PRLLNLRQMLECFLLHRREVVTRRTVF 368 Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR--------------- 420 ++ R IL+GL +A NIDE IAII+ P K +++R Sbjct: 369 DLRKARERGHILEGLAVALANIDEFIAIIKAAPTPPVAKAELMNRSWDSGLVRDMLVRAE 428 Query: 421 --------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNL 454 + L++ Q IL +RL+ L LE+ +I E + Sbjct: 429 SETSGGGAAYRPEGLLPVFGMQGDGLYRLSDTQAQEILQMRLQRLTGLEQDKIVQEYREV 488 Query: 455 LAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAM 514 +A+ + +L + +I I V+E+ + + G R + E + + T + + Sbjct: 489 MAQIADLLDIL----AKPERITAII--VEELTAIRAEFGDERRSQIEHNATELDT--EDL 540 Query: 515 IEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLL 566 I + + V +S+ G++ R+ K A KE D + A+T D IL Sbjct: 541 ITPQDLVVTLSHSGYMKSQPISEYRAQKRGGRGKQAAATKEDDWIDTLFVANTHDYILCF 600 Query: 567 STDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQD---IVTAFVYDSTCKLLVVSSKG 621 S G+ Y L + G G I + L+ + I+ +D + + +SKG Sbjct: 601 SNRGRLYWLKVWEVPQGSRNSRGRPIVNMFPLSPGEKINVILPVKQFDEQHFVFMATSKG 660 Query: 622 NAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT-GDH-VAVVGENRKLLIFSIDQIP 679 +E +N RK E + +T G H V + + K + F + + Sbjct: 661 TVKKTALTE-FSNPRKAGIIAVDLDEGDFLIGADITDGQHDVMLFSDAGKAVRFDENDVR 719 Query: 680 EMSR-GKGVR 688 M R +GVR Sbjct: 720 PMGRQARGVR 729 >gi|309781037|ref|ZP_07675775.1| DNA gyrase, A subunit [Ralstonia sp. 5_7_47FAA] gi|308920103|gb|EFP65762.1| DNA gyrase, A subunit [Ralstonia sp. 5_7_47FAA] Length = 889 Score = 380 bits (976), Expect = e-103, Method: Compositional matrix adjust. Identities = 253/730 (34%), Positives = 390/730 (53%), Gaps = 72/730 (9%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 VSL + YLAYA+S I RA+PD+RDG KPVHRR +++M E+ D+ +KKSARIV Sbjct: 11 VSLEEEMRSSYLAYAMSVIVGRALPDVRDGLKPVHRRALYSMHELNNDWNRPYKKSARIV 70 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGD +VYD++VR+AQ F RY L+ GQGNFG++DGD+AAA RYTE R++++ Sbjct: 71 GDVIGKYHPHGDTAVYDTIVRMAQNFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRLSKI 130 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A +L +D++ V+F Y+ ++EP V P++ PNLL NG+SGIAVGMAT+IP HN+ E+ Sbjct: 131 AHELLADLDKETVNFEPNYDGSETEPSVLPARIPNLLINGSSGIAVGMATNIPPHNLNEV 190 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 + L L+ NPE ++++L+E I PDFPT GII + E YR GRG +RA+ E Sbjct: 191 VDGCLHLLRNPEATVDELIELIPAPDFPTAGIIY-GISGVREGYRTGRGRVVMRAKTHFE 249 Query: 260 EVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318 ++ RG I+V E+PYQV K L+E+IAEL+ KRI + DIRDES + V+ R Sbjct: 250 DIDRGQRQAIIVDELPYQVNKRTLLERIAELVTEKRIEGISDIRDESDKSGMRVVIELKR 309 Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378 P++++ +++ + ++ F +NM L G+ P+++ L +L+ +L HRREV+ RR+ F Sbjct: 310 GEVPEVVLNNLYKNTQLQDTFGMNMVALVDGQ-PRLLNLRQMLECFLLHRREVVTRRTVF 368 Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR--------------- 420 ++ R IL+GL +A NIDE IAII+ P K +++R Sbjct: 369 DLRKARERGHILEGLAVALANIDEFIAIIKAAPTPPVAKAELMNRSWDSGLVRDMLVRAE 428 Query: 421 --------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNL 454 + L++ Q IL +RL+ L LE+ +I E + Sbjct: 429 SETSGGGAAYRPEGLLPVFGMQGDGLYRLSDTQAQEILQMRLQRLTGLEQDKIVQEYREV 488 Query: 455 LAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAM 514 +A+ + +L + +I I V+E+ + + G R + E + + T + + Sbjct: 489 MAQIADLLDIL----ARPERITAII--VEELTAIRAEFGDERRSQIEHNATELDT--EDL 540 Query: 515 IEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLL 566 I + + V +S+ G++ R+ K A KE D + A+T D IL Sbjct: 541 ITPQDLVVTLSHSGYMKSQPISEYRAQKRGGRGKQAAATKEDDWIDTLFVANTHDYILCF 600 Query: 567 STDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQD---IVTAFVYDSTCKLLVVSSKG 621 S G+ Y L + G G I + L+ + I+ +D + + +SKG Sbjct: 601 SNRGRLYWLKVWEVPQGSRNSRGRPIVNMFPLSPGEKINVILPVKQFDEQHFVFMATSKG 660 Query: 622 NAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT-GDH-VAVVGENRKLLIFSIDQIP 679 +E +N RK E + +T G H V + + K + F + + Sbjct: 661 TVKKTALTE-FSNPRKAGIIAVDLDEGDFLIGADITDGQHDVMLFSDAGKAVRFDENDVR 719 Query: 680 EMSR-GKGVR 688 M R +GVR Sbjct: 720 PMGRQARGVR 729 >gi|333025713|ref|ZP_08453777.1| putative DNA gyrase subunit A [Streptomyces sp. Tu6071] gi|332745565|gb|EGJ76006.1| putative DNA gyrase subunit A [Streptomyces sp. Tu6071] Length = 846 Score = 380 bits (976), Expect = e-103, Method: Compositional matrix adjust. Identities = 231/626 (36%), Positives = 353/626 (56%), Gaps = 33/626 (5%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 V+ V L ++ YL YA+S I RA+PD+RDG KPVHRR+++AM + G F K A Sbjct: 3 VEPVGLETEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMYDGGYRPEKGFYKCA 62 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+V+G HPHGD S+YD+LVRLAQ + R PL+ GNFG+ D AAA RYTE +M Sbjct: 63 RVVGDVMGNYHPHGDSSIYDALVRLAQTWAMRMPLVDSNGNFGSPGNDPAAAMRYTECKM 122 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 ++ +++ +DE+ VDF D Y+ EP V P++FPNLL NG++GIAVGMAT+IP HN+ Sbjct: 123 APLSMEMVRDIDEETVDFSDNYDGRSQEPDVLPARFPNLLINGSAGIAVGMATNIPPHNL 182 Query: 197 QEICEAALALIDNPEISIEKLLEYII----GPDFPTGGIIVESRESIVESYRLGRGGFRV 252 +E+ A + +PE S E+LL+ +I GPDFPTG ++V R+ I E+YR GRG + Sbjct: 183 REVAAGAQWYLAHPEASNEELLDALIERIKGPDFPTGALVV-GRKGIEEAYRTGRGSIPM 241 Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV--R 310 RA VEE+ + C+VVTE+PYQV L +KIA+L+ +I + D+RDE++ R Sbjct: 242 RAVVEVEEI-QNRQCLVVTELPYQVNPDNLAQKIADLVKDGKIGGIADVRDETSSRTGQR 300 Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370 +V+ K R +++ ++F +D++T F NM L G VP+ + LD ++ W+ H+ E Sbjct: 301 LVVVLK-RDAVAKVVLNNLFKHTDLQTNFSANMLALVDG-VPRTLSLDAFIRHWVTHQIE 358 Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQ 427 V+ RR+ FR++ + R IL+GLL A IDE+IA+IR D + ++ + E Q Sbjct: 359 VIVRRTRFRLRKAEERAHILRGLLKALDAIDEVIALIRRSDTVEDARGGLMGLLEIDEIQ 418 Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487 +AIL ++LR L LE ++ E D L ++ ++L S ++Q + E+ ++ + F Sbjct: 419 ANAILEMQLRRLAALERQKLIQEHDELQRRIDEYKAILASPERQRQIVNDELGQIVDKFG 478 Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVD 539 RR+ D + +I +E I V IS G++ RS K Sbjct: 479 DD-----RRSQLVPF---DGDMSMEDLIAEEDIVVTISRSGYVKRTRTDDYRSQKRGGKG 530 Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEAIQLLIDLN 597 + KE D + T +L + G+ Y A L +GR G+ + L+ Sbjct: 531 VRGAKLKEDDIVDHFFVTTTHHWLLFFTNKGRVYRAKAYELPDAGRDARGQHVANLLAFQ 590 Query: 598 HNQDI--VTAFVYDSTCKLLVVSSKG 621 ++ I + A LV+++KG Sbjct: 591 PDESIAQILAIKDYEAAPYLVLATKG 616 >gi|222110596|ref|YP_002552860.1| DNA gyrase subunit a [Acidovorax ebreus TPSY] gi|221730040|gb|ACM32860.1| DNA gyrase, A subunit [Acidovorax ebreus TPSY] Length = 877 Score = 380 bits (976), Expect = e-103, Method: Compositional matrix adjust. Identities = 228/618 (36%), Positives = 348/618 (56%), Gaps = 60/618 (9%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 +SL + YL YA+S I RA+PD RDG KPVHRR++ AM E+ D+ +KKSARIV Sbjct: 11 ISLEEEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHELNNDWNRPYKKSARIV 70 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGD +VYD++VR+AQ F R+ L+ GQGNFG++DGDSAAA RYTE R++++ Sbjct: 71 GDVIGKYHPHGDSAVYDTIVRMAQDFSLRHMLVDGQGNFGSVDGDSAAAMRYTEIRLSKI 130 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A +L +D++ VDF Y+ + EP+V PSK PNLL NG++GIAVGMAT+IP HN+ E+ Sbjct: 131 AHEMLADIDKETVDFGPNYDGSEKEPLVLPSKLPNLLVNGSAGIAVGMATNIPPHNLNEV 190 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 +A L L+ P+ ++++L+E I PDFPT GII + E YR GRG +RA+ E Sbjct: 191 VDACLHLLRQPDATVDELMEIIPAPDFPTAGIIY-GINGVKEGYRTGRGKVVMRAKCHFE 249 Query: 260 EVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318 ++ +G I+V E+PYQV K L E++AEL+ K++ + I+DES + ++ R Sbjct: 250 DIDKGQRQAIIVDELPYQVNKKTLQERMAELVHEKKLEGISHIQDESDKSGMRLVIELKR 309 Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378 P++++ +++ + ++ F +NM L G+ P++ L ++K +L HRREV+ RR+ F Sbjct: 310 GEVPEVVLNNLYKQTQLQDTFGMNMVALVDGQ-PKLCNLKDLIKVFLQHRREVVTRRTVF 368 Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIR------------------------------ 408 ++ R +L+GL +A NIDE I IIR Sbjct: 369 ELRKARERGHVLEGLAVALANIDEFIRIIRESPTPPVAKAELMARSWDSQLVREMLTRTR 428 Query: 409 ------NEDKPKPVMVSR---------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453 N D +P + R + L++ Q IL +RL+ L LE+ +I +E + Sbjct: 429 ADGGVVNADDYRPEGLEREFGMQDGGLYRLSDTQAQEILQMRLQRLTGLEQDKIVAEYKD 488 Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513 +++ E + +L + I E+ +++ F +S +G RR+T E S D +T + Sbjct: 489 VMSVIEDLLDILAKPARVSTIIGEELSTLRQEFGQSK-VGARRSTI-EHSAQDLST--ED 544 Query: 514 MIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565 +I + V +S+ G+I R+ K A KE D + A+T D IL Sbjct: 545 LITPTDMVVTLSHTGYIKSQPLSEYRAQKRGGRGKQAAATKEDDWIDQLFIANTHDYILC 604 Query: 566 LSTDGKAYTLPAGNLLSG 583 S G+ Y L + SG Sbjct: 605 FSNRGRLYWLKVWEVPSG 622 >gi|239982759|ref|ZP_04705283.1| DNA topoisomerase IV subunit A [Streptomyces albus J1074] gi|291454606|ref|ZP_06593996.1| DNA topoisomerase IV subunit A [Streptomyces albus J1074] gi|291357555|gb|EFE84457.1| DNA topoisomerase IV subunit A [Streptomyces albus J1074] Length = 815 Score = 380 bits (976), Expect = e-103, Method: Compositional matrix adjust. Identities = 213/523 (40%), Positives = 319/523 (60%), Gaps = 16/523 (3%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 EE + + + ++ +L YA S I RA+PD RDG KPVHRRI++ M+EMGL + Sbjct: 15 EERILDIDVVDEMQGSFLEYAYSVIYSRALPDARDGMKPVHRRIVYQMNEMGLRRDRGYV 74 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYT 132 K AR+VGEV+GKLHPHGD S+YD+LVR+AQPF R PL+ G GNFG++ + D AA RYT Sbjct: 75 KCARVVGEVMGKLHPHGDASIYDALVRMAQPFSMRLPLVDGHGNFGSLGNDDPPAAMRYT 134 Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192 E RM L+ + +DE+ VDF Y+ ++ EPV P+ FPNLL NG SGIAVGMAT++P Sbjct: 135 ECRMADATSLMTESIDENTVDFSPNYDGQEQEPVALPAAFPNLLVNGASGIAVGMATNMP 194 Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252 HN+ E+ AA LI +P +E L+ ++ GPD PTGG IV + ++Y GRG F++ Sbjct: 195 PHNLGEVVAAARHLIKHPGADLETLMRFVPGPDLPTGGRIV-GLGGVRDAYATGRGTFKI 253 Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD--ESAEDVR 310 RA VE V +VVTE+P+ V ++I KI +L+ AK++ + D++D + +R Sbjct: 254 RATVAVENVTARRKGLVVTELPFSVGPEKVISKIKDLVGAKKLQGIADVKDLTDREHGLR 313 Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370 +V+ KN P+ ++E ++ L+ ME F +N L G+ P + L +L+ +L HR Sbjct: 314 LVIEIKN-GFVPEAVLEQLYKLTPMEESFGINNVALVDGQ-PLTLGLKELLEVYLDHRFT 371 Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQ 427 V+ RRS FR R+ +++GLL+A ++IDE+I IIR N + + ++ RFSL++ Q Sbjct: 372 VVRRRSEFRRGKKRDRLHLVEGLLVALVDIDEVIRIIRDSENSAEARERLMERFSLSDIQ 431 Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487 IL+ LR L + + +++SE D L AE E++ +L+S + ++ E+ V + + Sbjct: 432 TQYILDTPLRRLTRFDRIELESERDRLTAEIEELSRILDSDAELRKLVSSELAAVSKKY- 490 Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI 530 TD RRT E S A A Q +E P V++S+ G + Sbjct: 491 -GTD---RRTVLLESSGAAAAVPLQ--VEDTPCRVLLSSTGLL 527 >gi|281420205|ref|ZP_06251204.1| DNA gyrase, A subunit [Prevotella copri DSM 18205] gi|281405700|gb|EFB36380.1| DNA gyrase, A subunit [Prevotella copri DSM 18205] Length = 878 Score = 380 bits (976), Expect = e-103, Method: Compositional matrix adjust. Identities = 251/783 (32%), Positives = 406/783 (51%), Gaps = 58/783 (7%) Query: 6 ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65 + + T+ + + +++ ++ Y+ Y++S I RA+PD+RDGFKPVHRRI++ M +G Sbjct: 1 MDENQTMDHDRIMKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMLGIG 60 Query: 66 LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125 +KK AR+VGEV+GK HPHGD SVY +LVR+ Q + RY LI GQGNFG++DGDS Sbjct: 61 NTSDKPYKKCARVVGEVLGKYHPHGDSSVYGALVRMGQEWNMRYTLIDGQGNFGSVDGDS 120 Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185 AA RYTE R++++ E I+ +D++ VD + +++ EP V P+K PNLL NG +GIAV Sbjct: 121 PAAMRYTECRLSKMGEHIMDDLDKETVDMTNNFDDTLQEPTVMPTKIPNLLVNGGNGIAV 180 Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245 GMAT++P+HN+ E+ + A IDNP+I + L++YI PDFPTG I + + ++Y Sbjct: 181 GMATNMPTHNLGEVIDGCCAYIDNPDIDTDGLMQYIPAPDFPTGATIY-GIQGVKDAYET 239 Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305 GRG VRA +E IV+TEIPY V K +L+ IA+L R+ + ++ DES Sbjct: 240 GRGRIVVRATAEIES-SENHDKIVITEIPYGVNKEQLVMAIADLAKEGRVDGIANVNDES 298 Query: 306 A-EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364 + +RIV+ K R + ++L+ +F L+ +++ F +N L GR P+++ L +K + Sbjct: 299 GRQGMRIVVDVK-RDANANVLLNKLFKLTALQSSFSVNCIALVNGR-PRLLSLKECVKYF 356 Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRF 421 + HR +V RR+ F ++ R IL+GL+IA NIDE++ IIR P + RF Sbjct: 357 VEHRHDVTIRRTQFELKKAQERAHILEGLIIACDNIDEVVHIIRASKTPSDAQRNLEKRF 416 Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481 L E Q AI+++RL L L Q+ +E + L+ + ++ +LN + + E+ E Sbjct: 417 ELDELQSKAIVDMRLSQLTGLRLEQLHNEFNELMKTIDYLNQILNDPELCKKVMKDELNE 476 Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSL 533 VKE + + RRT + D + +P+ + +S+ G+I R Sbjct: 477 VKEKYGDA-----RRTM---IKPDDHEFNPEDFYPNDPVVITVSHLGYIKRTPLSEFREQ 528 Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQ 591 V ++ D + A +L + G+ Y L + G G AIQ Sbjct: 529 ARGGVGSKGARTRDKDFTEYIYPATMHQTMLFFTKKGRCYWLKCYEIPEGDRNSKGRAIQ 588 Query: 592 LLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG---KTFLKVSSEE 648 L+++ + D V AF L + +A + ++ T+ G KT L+ S Sbjct: 589 NLLNI-ESDDQVNAF--------LRLRGLNDAEFINNHYVVFATKNGTVKKTCLEAYSRP 639 Query: 649 KMKLVVK---VTGDHVA------------VVGENRKLLIFSIDQIPEMSRG----KGVRL 689 + V+ V GD V + N + + F ++I M R +G+RL Sbjct: 640 RANGVIAINIVEGDEVVDVRLTNGHNELIIANRNGRAVRFDENEIRTMGRTSTGVRGMRL 699 Query: 690 QSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGK 749 D + +I E T + + + Y + + L + KRGG G ++G+ Sbjct: 700 DE-GDDAVVGMIVVNDPEKETVMVVSEQGYGKRSDVLDYRVTKRGGKGVKTLNITDKTGR 758 Query: 750 FLS 752 ++ Sbjct: 759 LVA 761 >gi|300214582|gb|ADJ78998.1| Topoisomerase IV subunit A [Lactobacillus salivarius CECT 5713] Length = 808 Score = 380 bits (976), Expect = e-103, Method: Compositional matrix adjust. Identities = 240/735 (32%), Positives = 413/735 (56%), Gaps = 43/735 (5%) Query: 13 VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72 E ++ +SL + ER+ Y+ I+ERA+PD+RDG KPV RRI+ AM+E G + AF Sbjct: 3 TERKIQELSLEAVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILFAMNEDGNTYDKAF 62 Query: 73 KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132 +KSA+ VG V+G HPHGD S+Y+++VRL+Q + R PLI GN G++DGDS AA RYT Sbjct: 63 RKSAKSVGNVMGNFHPHGDTSIYEAMVRLSQSWKLREPLIEMHGNNGSMDGDSPAAMRYT 122 Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192 EAR++Q+A +LQ +D+ VD +++ + EP V P++FPNLL NG +GI+ G AT IP Sbjct: 123 EARLSQIASEMLQDIDKKTVDMVLNFDDTEYEPTVLPARFPNLLVNGATGISAGYATEIP 182 Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252 HN+ E EAA+ LI++P S++ L+++I GPDFPTGGI+ + + I ++Y GRG + Sbjct: 183 PHNLSETIEAAIYLINHPNASLDDLMQFIKGPDFPTGGIL-QGIDGIKKAYETGRGRAVL 241 Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRI 311 R++ +E++ I+VTEIPY+V KS L+++I EL I K++ + ++RDES E +R+ Sbjct: 242 RSKTKIEDIRGNKQQIIVTEIPYEVNKSALVKRIDELRILKKVEGISEVRDESDREGLRV 301 Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371 V+ K ++ + ++ +F +D++ + NM ++ R P+ + L IL+ +L H+REV Sbjct: 302 VVELK-KNANAQGILNYLFKNTDLQVSYNFNMVAINNKR-PEHVGLKTILEAYLEHQREV 359 Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQV 428 RR+ F ++ R I+KGL+ A +D++I IR N+ K +VS FS TE Q Sbjct: 360 TTRRTKFDLEKAKAREHIVKGLIKALSILDDVIKTIRASKNKSDAKKNLVSEFSFTEAQA 419 Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488 +AI++L+L L + ++ E + L +++L + K+ I E+ + + + Sbjct: 420 EAIVSLQLYRLTNTDVTALQKEAEELQKAIANFENILANPKELDKVIRKELNAINKKY-- 477 Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKS-HSVDLSALHF 545 G R T + + + M+ +E + +++S+ G+++ SL+S ++ D Sbjct: 478 ----GSERLTVIQDEISSLKIETEVMVAQEDVMLLVSHDGYVKRSSLRSFNASDNDENGL 533 Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIV 603 K+ D + +T + + + G P ++ R GE + + L +++ ++ Sbjct: 534 KDEDYPILQSVVNTLSHLFIFTNKGNLIYRPIHEVIESRWKDTGEHLSQTVGLGNDEYVL 593 Query: 604 TAFVY---DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH 660 AFV+ D K L+ + +G V+ +A+ + G+T+ K + +KL K D Sbjct: 594 NAFVFESIDQDAKFLIATKEGYIKQVK----LADLKPGRTY-KTRASRYVKL--KTDADE 646 Query: 661 VAVVG--ENRKLLIF-----------SIDQIPEM-SRGKGVRLQSYKDGGISDVICFKIC 706 V V E+ K +F S+D++P + GV+ +D +++VI Sbjct: 647 VISVSQVESDKSQVFCASYTGYGLRYSLDEVPTNGALAAGVKCMDLRDDTLANVILVSES 706 Query: 707 EGLTWIDSAGRSYNR 721 + ++ + G SY + Sbjct: 707 DEVSILTQRG-SYKK 720 >gi|300312989|ref|YP_003777081.1| DNA gyrase subunit A protein [Herbaspirillum seropedicae SmR1] gi|300075774|gb|ADJ65173.1| DNA gyrase subunit A protein [Herbaspirillum seropedicae SmR1] Length = 881 Score = 380 bits (976), Expect = e-103, Method: Compositional matrix adjust. Identities = 226/609 (37%), Positives = 343/609 (56%), Gaps = 59/609 (9%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 +SL + + YL YA+S I RA+PD+RDG KPVHRR+++AM EM + F K AR+V Sbjct: 11 ISLEEEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHEMNNVWNRPFVKCARVV 70 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 GEV+GK HPHGD S+YD+LVR+AQ F RY L+ GQGNFG+IDGD AAA RYTE R+ ++ Sbjct: 71 GEVMGKYHPHGDASIYDTLVRMAQDFSLRYTLVDGQGNFGSIDGDGAAAMRYTECRLDKI 130 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 + +L ++++ VDF Y+ ++ EP V P++ PNLL NG+SGIAVGMAT+IP HN+ E+ Sbjct: 131 SNELLADIEKETVDFVPNYDGKEKEPSVLPTRIPNLLVNGSSGIAVGMATNIPPHNITEV 190 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 AL L+ N + +I++L+E + PDFPTGGII + + YR GRG +RA+ E Sbjct: 191 INGALHLLANEQCTIDELIELVPAPDFPTGGIIY-GVSGVRDGYRTGRGRVVMRAKTHFE 249 Query: 260 EVGR-GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318 E GR G I+V E+PYQV K L+E+IAEL+ K++ + D+RDES + V+ R Sbjct: 250 EYGREGRIAIIVDELPYQVNKKALLERIAELVRDKKLEGISDLRDESDKSGMRVVIELKR 309 Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378 P++++ +++ + ++ F +NM L G+ P+++ L +L+ +L+HRREV+ RR+ F Sbjct: 310 GEVPEVVLNNLYKQTQLQDTFGMNMVALVDGQ-PRLLNLKQLLECFLSHRREVVTRRTVF 368 Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR--------------- 420 ++ R +L+GL +A NID+ IAIIR P K ++SR Sbjct: 369 ELRKARERGHVLEGLAVALANIDDFIAIIRAAPTPPIAKAELMSRAWDSSMVREMLARAG 428 Query: 421 --------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNL 454 + L++ Q IL +RL+ L LE+ +I +E ++ Sbjct: 429 EANEGGIEAFRPESLPAHYGIQSDGLYKLSDEQAQEILQMRLQRLTGLEQDKIVNEYKDV 488 Query: 455 LAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAM 514 +A+ + +L + I E+ K F RR T E + D AT + + Sbjct: 489 MAQIADLLDILAKPARVTAIITDELNAAKNDFGIGAKDERRST--IEHNATDLAT--EDL 544 Query: 515 IEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLL 566 I + + V +S+ G++ R+ K A+ K+ D + A+T D IL Sbjct: 545 ITPQDMVVTLSHTGYMKSQPVSEYRAQKRGGRGKQAMATKDDDWIDQLFIANTHDYILCF 604 Query: 567 STDGKAYTL 575 S G+ Y L Sbjct: 605 SNRGRLYWL 613 >gi|282879557|ref|ZP_06288288.1| DNA gyrase, A subunit [Prevotella timonensis CRIS 5C-B1] gi|281306505|gb|EFA98534.1| DNA gyrase, A subunit [Prevotella timonensis CRIS 5C-B1] Length = 872 Score = 380 bits (976), Expect = e-103, Method: Compositional matrix adjust. Identities = 236/690 (34%), Positives = 373/690 (54%), Gaps = 45/690 (6%) Query: 6 ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65 + + T+ + + +++ ++ Y+ Y++S I RA+PD+RDGFKPVHRRI++ M +G Sbjct: 1 MDENQTVDHDRIIKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMLGIG 60 Query: 66 LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125 +KK AR+VGEV+GK HPHGD SVY +LVRLAQ + RY L+ GQGNFG++DGDS Sbjct: 61 NTSDKPYKKCARVVGEVLGKYHPHGDSSVYGALVRLAQDWNMRYTLVDGQGNFGSVDGDS 120 Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185 AAA RYTE R+ ++ E I+ +D+D VD + +++ EP V P+K PNLL NG +GIAV Sbjct: 121 AAAMRYTECRLAKMGEHIMDDLDKDTVDMANNFDDTLVEPTVMPTKIPNLLVNGGNGIAV 180 Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245 GMAT++P+HN++E+ + A IDNP+I +E+L++YI PDFPTGG I + + ++Y Sbjct: 181 GMATNMPTHNLREVIDGCCAYIDNPDIELEELMQYIQAPDFPTGGYIY-GLQGVKDAYET 239 Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305 GRG +RA+ +E IVVTEIPY V K +LIE IA L+ ++ + + DES Sbjct: 240 GRGRIILRAKAEIES-DESHDKIVVTEIPYGVNKQQLIEYIANLVKEGKLDGIANANDES 298 Query: 306 A-EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364 + +RIV+ K R + ++++ +F ++ +++ F +N L GR P+++ L +K + Sbjct: 299 GRQGMRIVIDVK-RDANANVILNKLFKMTALQSSFSVNNIALVNGR-PRLLSLKECVKYF 356 Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RF 421 + HR +V RR+ F ++ R ILKGL+IA NIDE++ IIR P + RF Sbjct: 357 VEHRHDVTIRRTKFELKKAQDRAHILKGLIIACDNIDEVVHIIRGSKTPAEAQTNLEKRF 416 Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481 L E Q AI+++RL L L Q+ +E D L ++++L+ + + E+ E Sbjct: 417 DLDELQSKAIVDMRLSQLTGLRLEQLHAEFDELEKLIAYLENILSDPELCKKVMKDELNE 476 Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSL 533 VKE + RRT A + +P+ + +S+ G+I R Sbjct: 477 VKEKYGDD-----RRTKIIPDEHEFNA---EDFYPNDPVVITVSHLGYIKRTPLSDFREQ 528 Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQ 591 V + D + A +L + G+ Y L N+ G G AIQ Sbjct: 529 ARGGVGSKGATHRNADFTEFIYPATMHQTMLFFTKKGRCYWLKCYNIPEGTKDSKGRAIQ 588 Query: 592 LLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG---KTFLKVSSEE 648 L+++ + D+ +L + + + ++ T+ G KT L+ S Sbjct: 589 NLLNIESD---------DAINAILRLRGLDDEEFINSHYVVFATKNGTVKKTCLEAYSRP 639 Query: 649 KMKLVVKVT---GDHVAVV----GENRKLL 671 + V+ + GD V V GEN ++ Sbjct: 640 RTNGVIAINIAEGDEVVDVRLTNGENELIM 669 >gi|315022787|gb|EFT35811.1| DNA gyrase subunit A [Riemerella anatipestifer RA-YM] Length = 841 Score = 380 bits (976), Expect = e-103, Method: Compositional matrix adjust. Identities = 225/608 (37%), Positives = 361/608 (59%), Gaps = 36/608 (5%) Query: 26 LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85 ++ Y+ Y++S I RA+PD+RDG KPVHRR+++ M +G+ + KSARIVG+V+GK Sbjct: 17 MKSSYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMYGLGVFSNKKYLKSARIVGDVLGK 76 Query: 86 LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145 HPHGD SVYD++VR+AQP+ RYP + GQGNFG++DGD AA RYTEAR+ ++++ IL Sbjct: 77 YHPHGDISVYDAMVRMAQPWSLRYPQVDGQGNFGSMDGDPPAAMRYTEARLKKISDEILS 136 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 +D++ VDF++ +++ EP V P+K PNLL NGTSGIAVGMAT++ HN+ E +A A Sbjct: 137 DLDKETVDFQNNFDDSLQEPTVLPTKIPNLLVNGTSGIAVGMATNMAPHNLSESVDAICA 196 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265 IDN I I++L++YII PDFPTGGII + + +++ GRG +RA+ EE+G + Sbjct: 197 YIDNKNIEIDELMKYIIAPDFPTGGIIY-GYDGVRDAFHTGRGRIVLRAKVAFEEIGNRN 255 Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFPKNRSLDPDL 324 I+VTEIPY V K+ +I + +EL+ +I + +IRDES +R+V KN ++ P++ Sbjct: 256 -AIIVTEIPYLVNKAEMIARTSELVKEDKIQGIHEIRDESDRRGMRVVYELKNDAI-PNV 313 Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384 ++ ++ + ++T F +N L GR PQ + L I+ ++ HR E++ RR+ + ++ Sbjct: 314 VLNLLYKYTALQTSFSVNNIALVKGR-PQQLNLKDIIVHFVEHRHEIVIRRTQYELKKAR 372 Query: 385 RRVEILKGLL--IAYLN-IDEIIAIIRNEDKPKPV---MVSRFSLTENQVDAILNLRLRS 438 R IL+G + IA + +D+ I+IIR+ P+ +++ F L++ Q AIL+LRL Sbjct: 373 ERAHILEGFMKVIATQDTLDKAISIIRHSATPQAAKEGLIAEFELSDIQAQAILDLRLAR 432 Query: 439 LRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTT 498 L +E +I+ E ++ ++ +L + + + I E+ EVKE + G R T Sbjct: 433 LTGMELDKIRDEYKAIMDLINDLEDILANEARCYQIIKDELLEVKEKY------GDERRT 486 Query: 499 FCEVSRADKATLQQAMIEKEPITVVISNRGWIR-----SLKSHS---VDLSALHFKEGDS 550 + S + + + I E + + IS+ G+I+ K+ S V A ++ D Sbjct: 487 EIDYSGGEMSI--EDFIPNEEVVLTISHAGYIKRTLLSEYKTQSRGGVGNRAASTRDEDF 544 Query: 551 LKIALHAHTTDRILLLSTDGKAYTL-----PAGNLLSGRGHGEAIQLLIDLNHNQDIVTA 605 L+ + A +L + GK Y L P G S G AIQ LI++ + D + A Sbjct: 545 LEYIVSATNHQYMLFFTEKGKCYWLRVFEIPEG---SKTAKGRAIQNLINIEPD-DKIKA 600 Query: 606 FVYDSTCK 613 ++ + K Sbjct: 601 YIRTNDLK 608 >gi|157825406|ref|YP_001493126.1| DNA gyrase subunit A [Rickettsia akari str. Hartford] gi|157799364|gb|ABV74618.1| DNA gyrase subunit A [Rickettsia akari str. Hartford] Length = 898 Score = 380 bits (976), Expect = e-103, Method: Compositional matrix adjust. Identities = 235/628 (37%), Positives = 351/628 (55%), Gaps = 50/628 (7%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 N+ V++ ++ YL YA+S I RAIPD+RDG KPVHRRII++M E G ++KS Sbjct: 8 NLVPVNIEDEMKVSYLDYAMSVIVSRAIPDVRDGLKPVHRRIIYSMHEAGNHASKPYRKS 67 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 ARIVG+V+GK HPHGD ++YDSLVR+AQ F R PL+ GQGNFG++DGD+AAA RYTE+R Sbjct: 68 ARIVGDVMGKYHPHGDSAIYDSLVRMAQAFSLRLPLVDGQGNFGSMDGDAAAAMRYTESR 127 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 M +V+ +++ +D++ V F Y+ + EP V P+ FPNLL NG+ GIAVGMAT+IP HN Sbjct: 128 MAKVSHKLVEDIDKETVSFNPNYDGSEKEPSVLPAMFPNLLVNGSGGIAVGMATNIPPHN 187 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 + E+ +A IDN +I I LLE + GPDFPTG +I+ I +Y GRG +R R Sbjct: 188 LGEVIDACCLYIDNNDIEILDLLEVVKGPDFPTGSMIL-GISGIRSAYLTGRGSIIMRGR 246 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314 +E +G I++TEIPY V K+RL+EKIAE++ KRI + D+RDES ++ VRI + Sbjct: 247 AEIENIGNSRQAIIITEIPYMVNKARLVEKIAEMVKEKRIEGISDLRDESNKNGVRIFIE 306 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K + + ++++ I+ + ++T F + M L G +P+VM L ++ +++ R V+ Sbjct: 307 LK-KDVVAEVVLNQIYACTQLQTSFGVIMLALKDG-LPKVMNLKEVIAAFVSFREVVITN 364 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN------------------------- 409 R+ + + + IL GL IA NIDEII II+ Sbjct: 365 RTIYLLNKARDKAHILLGLTIAVSNIDEIIRIIKAANDTNAAKQELMARSWEALKILPLV 424 Query: 410 ---EDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466 +DK + S TE Q AIL +RL+ L +E+ +++ EL NL E + ++L Sbjct: 425 KLVDDKAMLNEQDKCSFTELQAKAILEMRLQRLTAMEKNKLEEELKNLATEITEYINILG 484 Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526 S + + E+ +VKE F+ R T E D+ + +I++E + V ++ Sbjct: 485 SRTRLLEILKEELIKVKEEFATP------RLTSIEFGEFDQDI--EDLIQREEMVVTVTL 536 Query: 527 RGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAG 578 G+I RS K S L ++ D T +L S G+ Y+L Sbjct: 537 GGYIKRVPLSSYRSQKRGGKGRSGLSMRDEDITTRIFVGSTHTPMLFFSNIGQVYSLKLY 596 Query: 579 NL-LSG-RGHGEAIQLLIDLNHNQDIVT 604 L LS +G G + ++ L N+ I Sbjct: 597 KLPLSNPQGKGRPMVNILPLKENEHITN 624 >gi|241761282|ref|ZP_04759370.1| DNA gyrase, A subunit [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|241374189|gb|EER63686.1| DNA gyrase, A subunit [Zymomonas mobilis subsp. mobilis ATCC 10988] Length = 925 Score = 380 bits (976), Expect = e-103, Method: Compositional matrix adjust. Identities = 257/748 (34%), Positives = 385/748 (51%), Gaps = 71/748 (9%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 ++ VS+ ++ YL YA+S I RA+PD+RDG KPVHRRI+ A E G G ++KS Sbjct: 41 DISPVSIIDEMKSSYLDYAMSVIVSRALPDVRDGLKPVHRRILFASQEGGFVPGHPYRKS 100 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 A+IVGEV+G HPHGD ++Y +L RL Q + R PLI GQGNFG++D D AA RYTEAR Sbjct: 101 AKIVGEVMGNFHPHGDSAIYMALARLTQDWSMRVPLIDGQGNFGSMDPDGPAAMRYTEAR 160 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 ++ A ++L +D D VDF Y+ EP V P++FPNLL NG GIAVGMAT+IP HN Sbjct: 161 LSPAAMMLLADIDRDTVDFSPNYDGSRQEPQVLPARFPNLLVNGAGGIAVGMATNIPPHN 220 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 + E+ A A I +P ISIE L+ + GPDFPTGG+++ + +Y+ GRG +R+R Sbjct: 221 LGEVLAACRAYIADPAISIEDLIRLVPGPDFPTGGVML-GQGGARSAYQNGRGSIIIRSR 279 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLF 314 + +EE IV+TEIPYQ+ KS L+EKIAE KR+ + DIRDES E VR+V+ Sbjct: 280 YNIEEKHGDRRSIVLTEIPYQIGKSALVEKIAEAAKDKRVEGISDIRDESNREGVRVVID 339 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K R PD+++ ++ + ++ FP NM L+ GR P+ M L I+ ++ R EV+ R Sbjct: 340 LK-RDATPDVVLNQLWRHTPAQSSFPANMLALNGGR-PETMSLKDIIAAFVQFREEVITR 397 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK-----------PVM------ 417 RS + + R +L G++IA N+DE++ IIRN P PV Sbjct: 398 RSKYDLFKARERAHLLLGMVIAVTNLDEVVRIIRNAPSPAEAHSELSARKWPVNDVLPYI 457 Query: 418 -----------VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466 ++L++ QVDAIL LRL L + QI EL L ++ +L Sbjct: 458 KLIEAVEDFEESGLYTLSKAQVDAILALRLSRLTAMGRDQIGEELKKLAISISELLEVLR 517 Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526 + ++ + + E V+ F+ RRT ++ A A + +IE+E + V +++ Sbjct: 518 NRERLYEIMVEEFDAVEAQFATP-----RRT---QIVAASDAIEDEDLIEREEMVVTVTH 569 Query: 527 RGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAG 578 G+I R+ S + K+ D++ T +L S GK Y L Sbjct: 570 GGYIKRTPLDTFRTQNRGGKGRSGMATKDEDAVTNLFVTCTHTPVLFFSNHGKVYRLKVW 629 Query: 579 NLLSG----RG----------HGEAIQLLIDLNHNQ-DIVTAFVYDSTCKLLVVSSKGNA 623 L G RG GE + ++ L ++ + V +T K V + +A Sbjct: 630 RLPEGAPQARGRPMVNLLPLAEGEVVSTVLPLPEDEAEWGNLHVLFATAKGSVRRNSMDA 689 Query: 624 FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIP--EM 681 F + + +N + F + + + + + D V + N K + F+ + + Sbjct: 690 F----TNVPSNGKFAIRFEEGDDDRLIGVTLLSENDDVLLATRNGKAIRFAATDVRVFQS 745 Query: 682 SRGKGVRLQSYKDGGISDVICFKICEGL 709 GVR + KDG +VI G Sbjct: 746 RTSTGVRGITLKDG--DEVISLSTLRGF 771 >gi|37514959|dbj|BAC98436.1| GyrA protein [Burkholderia glumae] Length = 869 Score = 380 bits (976), Expect = e-103, Method: Compositional matrix adjust. Identities = 230/621 (37%), Positives = 346/621 (55%), Gaps = 72/621 (11%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 +SL + YL YA+S I RA+PD+R G KPVHRR++ AM E+ D+ A+KKSARIV Sbjct: 11 ISLEEEMRRSYLDYAMSVIVGRALPDVRGGLKPVHRRVLFAMHELNNDWNRAYKKSARIV 70 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGD +VYD++VR+AQ F RY L+ GQGNFG++DGD+AAA RYTE RM ++ Sbjct: 71 GDVIGKYHPHGDIAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMAKI 130 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 +L +D++ VDF Y+ +SEP + P++ PNLL NG+SGIAVGMAT+IP HN+ E+ Sbjct: 131 GHELLADIDKETVDFGPNYDGSESEPTILPARIPNLLINGSSGIAVGMATNIPPHNLSEV 190 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 +A L+ NPE ++++L+E I PDFPT GII + + YR GRG +RA E Sbjct: 191 VDACHHLLANPEATVDELIEIIPAPDFPTAGIIY-GVAGVRDGYRTGRGRVVMRAATHFE 249 Query: 260 EVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318 E+ RG I+V E+PYQV K L+E+IAEL+ K++ + DIRDES + V+ R Sbjct: 250 EIDRGQRMAIIVDELPYQVNKRSLLERIAELVNEKKLEGISDIRDESDKSGMRVVIELKR 309 Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378 P++++ +++ + ++ F +NM L G+ P+++ L +L +LAHRREVL RR+ + Sbjct: 310 GEVPEVVLNNLYKSTQLQDTFGMNMVALVDGQ-PKLLNLKEMLVCFLAHRREVLTRRTIY 368 Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV-----------------MVSR- 420 ++ R +L+GL +A NIDE I II+ P P+ M++R Sbjct: 369 ELRKARERGHVLEGLAVALANIDEFIEIIKAAPTP-PIARQALMAKSWDSSLVREMLTRA 427 Query: 421 -----------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451 ++L+E Q IL +RL+ L LE+ +I E Sbjct: 428 ETENAAAGGREAYRPEGLNAAFGMQADGQYNLSETQAQEILQMRLQRLTGLEQDKIIGEY 487 Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511 ++A+ + +L ++ I E+ VK F G R + E++ + T Sbjct: 488 REVMAQIADLLDILARPERITTIITEELTAVKAEF------GDARRSKIELNATELNT-- 539 Query: 512 QAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRI 563 + +I + + V +S+ G++ R+ K A KE D ++ A+T D I Sbjct: 540 EDLITPQDMVVTMSHAGYVKSQPLSEYRAQKRGGRGKQATQMKEDDWIETLFIANTHDYI 599 Query: 564 LLLSTDG-----KAYTLPAGN 579 L S G K Y +P G+ Sbjct: 600 LCFSNRGRVYWVKVYEVPQGS 620 >gi|119489753|ref|ZP_01622511.1| DNA topoisomerase chain A [Lyngbya sp. PCC 8106] gi|119454327|gb|EAW35477.1| DNA topoisomerase chain A [Lyngbya sp. PCC 8106] Length = 855 Score = 380 bits (976), Expect = e-103, Method: Compositional matrix adjust. Identities = 243/727 (33%), Positives = 390/727 (53%), Gaps = 62/727 (8%) Query: 12 LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71 L+ V A L +++ YL YA+S I RA+PD+RDG KPVHRRI++AM E+GL Sbjct: 7 LLSGQVIATPLHTEMQQSYLEYAMSVIVGRALPDVRDGLKPVHRRILYAMHELGLTPDRP 66 Query: 72 FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131 ++K AR+VG+V+GK HPHGDQSVYD+LVRL Q F RYPL++G GNFG++D D AA RY Sbjct: 67 YRKCARVVGDVLGKYHPHGDQSVYDALVRLVQEFSSRYPLLAGHGNFGSVDNDPPAAMRY 126 Query: 132 TEARMTQVA-ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190 TE R+ + E +L V E VDF ++ EP V P++ P LL NG+SGIAVGMAT+ Sbjct: 127 TETRLASIGNEGLLTQVGEATVDFISNFDNSQQEPTVLPAQLPFLLLNGSSGIAVGMATN 186 Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250 +P HN+ E+ + +ALIDN ++S E+L I PDFPTGG IV S + I E+Y GRG Sbjct: 187 VPPHNLGEVVDGLIALIDNSDLSDERLRSIIPAPDFPTGGEIV-STDGIAEAYTQGRGSI 245 Query: 251 RVRARWCVEEVG-----RGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305 +R +E+V R IVVTE+P+QV K+ IEK A L+ A R+ + DIRDES Sbjct: 246 VMRGVAKIEQVPTAQRRRTKTAIVVTELPFQVNKASWIEKTASLVNAGRLEGISDIRDES 305 Query: 306 AED-VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364 D +R+V+ K R P +++ ++ +D+ ++F L + P+ + L IL+E+ Sbjct: 306 DRDGIRVVIELK-REASPQVVLHHLYQQTDLMSKFGAIFLAL-VDSQPRQLTLKQILQEF 363 Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRF 421 L R + L R+ + ++A RR I++GLL A N+D +I I+RN K + S Sbjct: 364 LNFREQTLIRQYTHELEAALRRGHIVEGLLNALANLDAVIEILRNAPDGGTAKISLESDL 423 Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481 ++E Q DAIL + +R L LE +++ E + L + ++ L++ + + E+R Sbjct: 424 QMSEAQADAILAMPMRRLTGLERQKLQEEFEELSEQIRQLRRLIDDRSELMKSLKKELRS 483 Query: 482 VKEIFSKSTDLGRRRTTFCEVSRAD--------------------KATLQQAMIEKEPIT 521 +K + RR + +A A LQ +E Sbjct: 484 LKRQYGDP----RRTRIIVQDPKAQPEQSSSRIRSGKPKSKGSQTTAILQPVAPAEEETF 539 Query: 522 VVISNRGWIRSLKSHS--------VDLSALHFKEGDSLKIALH-AHTTDRILLLSTDGKA 572 + ++RG++R L + + D S + ++ D + + +T + +++ GKA Sbjct: 540 LEFTHRGYVRRLSAKTGDSKSRSKADKSEIIVEDSDDFNVGSYLTNTGQNLAIITRTGKA 599 Query: 573 YTLPAGNL--LSGRGHGEAIQLLIDLNHNQD--------IVTAFV---YDSTCKLLVVSS 619 Y L G++ S R G + L+ + +D I+ F+ + L++V+ Sbjct: 600 YPLNVGDIPTTSNRSRGTPLITLLPSSVTKDPPMSLQELILAHFIVAQHSDKTDLILVTQ 659 Query: 620 KGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV-VKVTGDHVAVVGENRKLLIFSID-- 676 +G + +E++ T +G T +K+ ++++ + G+ + + ++L ++ Sbjct: 660 QGKIKRLSLTELMDLTNRGITIIKLKDQDELGYASLTRPGEQMILATSGGRVLRLPVNDE 719 Query: 677 QIPEMSR 683 Q+P M R Sbjct: 720 QLPPMGR 726 >gi|239616429|ref|YP_002939751.1| DNA gyrase, A subunit [Kosmotoga olearia TBF 19.5.1] gi|239505260|gb|ACR78747.1| DNA gyrase, A subunit [Kosmotoga olearia TBF 19.5.1] Length = 812 Score = 380 bits (975), Expect = e-103, Method: Compositional matrix adjust. Identities = 245/706 (34%), Positives = 382/706 (54%), Gaps = 76/706 (10%) Query: 30 YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89 Y+ Y++S I RAIPD+RDG KPV R+I+ M E+GL ++KKSARIVGEV+GK HPH Sbjct: 18 YMLYSMSVIVGRAIPDVRDGLKPVQRKILFGMLELGLRHNQSYKKSARIVGEVMGKFHPH 77 Query: 90 GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDE 149 GD ++YD+LVR+AQPF RYPLI GQGNFG+ID D AA RYTEARM ++AE +L +D+ Sbjct: 78 GDMAIYDALVRMAQPFSMRYPLIQGQGNFGSIDRDPPAAMRYTEARMQRLAEELLADIDK 137 Query: 150 DAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDN 209 + V ++ EP V P+K PNLL NG SGIAVGM T+IP HN+ E+ EA ALIDN Sbjct: 138 NTVKMIPNFDGSLIEPEVLPAKAPNLLMNGASGIAVGMMTNIPPHNLSELVEALTALIDN 197 Query: 210 PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIV 269 P+ +IE+L+EY+ GPDFPTGGII+ R+ I + Y GRG VR +EE +G IV Sbjct: 198 PDATIEELMEYVKGPDFPTGGIIM-GRDGIKKMYETGRGRMVVRGVAEIEE-AKGGTRIV 255 Query: 270 VTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESI 329 ++EIPY V K+ LI++IA + R + ++RDES + V+ R DP++++ + Sbjct: 256 ISEIPYGVSKADLIQQIANVAQNVRDIQVRNVRDESDKRGLRVVIELKRGADPNVVLNLL 315 Query: 330 FMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEI 389 + + ++T F +M V+ + P++M L I + ++ HR EV+ RR+ + ++ ++ I Sbjct: 316 YKHTQLQTTFGAHMLVIDEKKRPKLMNLKEIFQAFIKHRYEVVKRRTEYELEQASKKAHI 375 Query: 390 LKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVDAILNLRLRSLRKLEEYQ 446 L+GL A ID ++ IIRN + V+ +T Q AIL +RL L LE + Sbjct: 376 LEGLTKASRAIDTVVDIIRNSKNIQEASVNLQETLEITPEQSQAILEMRLGKLTALEIDK 435 Query: 447 IKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRAD 506 + +E L+ + ++ +L+ K + I E++E++ + + RRT D Sbjct: 436 LVTEYAELVEKIKEYREILSDDKNIYQIIKKELQELEAQYGDA-----RRTKISIDGNTD 490 Query: 507 KATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLL 566 + +I + + V ++ +G+I++ + K+G K TTD Sbjct: 491 FNV--EDVIPDDEVVVTVTKKGYIKATPLED------YRKQGRGGKGIRGVKTTD----- 537 Query: 567 STDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDS-TCKLLVVSSKGNAFI 625 D VT V + K +V++SKG A+ Sbjct: 538 ---------------------------------ADFVTNVVSTTRLSKTVVITSKGKAYF 564 Query: 626 VEESEIIANTR--KGK---TFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPE 680 + E+ +R +GK ++K+ +E ++ V+ V + VA N+ L+I + Sbjct: 565 INNYELECTSRSSRGKLLANYVKIEPDETVQAVLSVKREEVA----NKHLIITT------ 614 Query: 681 MSRGKGVR--LQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSEN 724 +GK R +++ + S + + EG + +D AG S + E Sbjct: 615 -RKGKIKRTPFEAFINSRTSGIKAITLNEGDSVVD-AGISTSEEET 658 >gi|119025024|ref|YP_908869.1| DNA gyrase subunit A [Bifidobacterium adolescentis ATCC 15703] gi|118764608|dbj|BAF38787.1| DNA gyrase (topoisomerase II) A subunit [Bifidobacterium adolescentis ATCC 15703] Length = 886 Score = 380 bits (975), Expect = e-103, Method: Compositional matrix adjust. Identities = 245/729 (33%), Positives = 395/729 (54%), Gaps = 46/729 (6%) Query: 12 LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71 +V E V+ L+ + E YLAYA+S I +RA+PD+RDG KPVHRR+I+AM + G Sbjct: 17 MVGERVQKKDLQQEMRESYLAYAMSVIVDRALPDVRDGMKPVHRRVIYAMYDGGYRPDRG 76 Query: 72 FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131 + K AR+VGEV+GK HPHGD ++YD+LVR+AQ + RY L+ GQGNFG+ D AAA RY Sbjct: 77 YSKCARVVGEVMGKYHPHGDSAIYDTLVRMAQSWSMRYTLVDGQGNFGSPGDDPAAAMRY 136 Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191 TE RM +A +++ +D+D VDF Y+ + EP V P++FPNLL NG+SGIAVGMAT+I Sbjct: 137 TECRMAPLAMEMVRDIDKDTVDFLPNYDGKTQEPTVLPARFPNLLCNGSSGIAVGMATNI 196 Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYII----GPDFPTGGIIVESRESIVESYRLGR 247 P HN++E+ E +D+P+ S E+LL+ +I GPDFPTG I+ + I ++YR GR Sbjct: 197 PPHNMREVAEGVHWALDHPDASREELLDNLIRIIKGPDFPTGATIL-GHKGIEQAYRTGR 255 Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307 G +RA EE+ +G C+V+TE+PYQV RL+ I E + +I + D+RDE++ Sbjct: 256 GLITMRAVVNTEEI-KGRMCLVITELPYQVNPDRLVVSIREAVRDGKIQGIADMRDETSG 314 Query: 308 DV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365 R+VL K R P +++ +++ S ++ F NM L G VP+ + LD ++ W+ Sbjct: 315 RTGQRLVLVLK-RDAVPKVVLNNLYKHSQLQQTFGANMLALVDG-VPRTLSLDAFIRHWV 372 Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFS 422 H+ EV+ RR+++ + + R IL+G L A IDE+IA+IR + + ++ Sbjct: 373 NHQLEVIARRTAYLKREAEERDHILQGYLKALDMIDEVIALIRASESAETARTGLMDLLD 432 Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482 + E Q DAIL ++LR L LE +I E + L+ + + +L ++Q + E+ Sbjct: 433 VDEVQADAILAMQLRRLAALERQKILDEHNELMRKIADYNDILAKPERQRKIVGDEL--- 489 Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---- 538 EI +K D RRT S + +I +E + V +++ G+I+ K+ Sbjct: 490 DEIVAKYGD--ERRTKILPYSGEMNV---EDLIAEENVVVTVTHSGFIKRTKADEYRAQH 544 Query: 539 ----DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQL 592 + +E D + T + +L + G+ Y L A L G G+ + Sbjct: 545 RGGKGIKGAKLREDDVVDHFFLTSTHNWLLFFTNKGRVYRLKAYELPEGSRDSKGQHVAN 604 Query: 593 LIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649 L+ ++ I T YD L++ + G +E + + G +++ ++E Sbjct: 605 LLQFGPDETIQTVLSIPNYDVAKYLVLATRSGKVKKTALAEYDSPRQGGLIAVRLMTDEN 664 Query: 650 MKLVVKVTG-------DHVAVVGENRKLLIFSID--QIPEMSR-GKGVRLQSYKDGGISD 699 + ++ G D + +V + L F + Q+ M R GV+ ++DG + Sbjct: 665 GENADELIGAALCNADDDIILVSKQGMSLKFEANDEQLRPMGRQTAGVQGMKFRDG--DE 722 Query: 700 VICFKICEG 708 ++ + +G Sbjct: 723 LLAMDVVQG 731 >gi|227890874|ref|ZP_04008679.1| DNA topoisomerase IV subunit A [Lactobacillus salivarius ATCC 11741] gi|227867283|gb|EEJ74704.1| DNA topoisomerase IV subunit A [Lactobacillus salivarius ATCC 11741] Length = 808 Score = 380 bits (975), Expect = e-103, Method: Compositional matrix adjust. Identities = 240/735 (32%), Positives = 413/735 (56%), Gaps = 43/735 (5%) Query: 13 VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72 E ++ +SL + ER+ Y+ I+ERA+PD+RDG KPV RRI+ AM+E G + AF Sbjct: 3 TERKIQELSLEAVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILFAMNEDGNTYDKAF 62 Query: 73 KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132 +KSA+ VG V+G HPHGD S+Y+++VRL+Q + R PLI GN G++DGDS AA RYT Sbjct: 63 RKSAKSVGNVMGNFHPHGDTSIYEAMVRLSQSWKLREPLIEMHGNNGSMDGDSPAAMRYT 122 Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192 EAR++Q+A +LQ +D+ VD +++ + EP V P++FPNLL NG +GI+ G AT IP Sbjct: 123 EARLSQIASEMLQDIDKKTVDMVLNFDDTEYEPTVLPARFPNLLVNGATGISAGYATEIP 182 Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252 HN+ E EAA+ LI++P S++ L+++I GPDFPTGGI+ + + I ++Y GRG + Sbjct: 183 PHNLSETIEAAIYLINHPNASLDDLMQFIKGPDFPTGGIL-QGIDGIKKAYETGRGRAVL 241 Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRI 311 R++ +E++ I+VTEIPY+V KS L+++I EL I K++ + ++RDES E +R+ Sbjct: 242 RSKTKIEDIRGNKQQIIVTEIPYEVNKSALVKRIDELRILKKVEGISEVRDESDREGLRV 301 Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371 V+ K ++ + ++ +F +D++ + NM ++ R P+ + L IL+ +L H+REV Sbjct: 302 VIELK-KNANAQGILNYLFKNTDLQVSYNFNMVAINNKR-PEHVGLKTILEAYLEHQREV 359 Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQV 428 RR+ F ++ R I+KGL+ A +D++I IR N+ K +VS FS TE Q Sbjct: 360 TTRRTKFDLEKAKAREHIVKGLIKALSILDDVIKTIRASKNKSDAKKNLVSEFSFTEAQA 419 Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488 +AI++L+L L + ++ E + L +++L + K+ I E+ + + + Sbjct: 420 EAIVSLQLYRLTNTDVTALQKEAEELQKAIANFENILANPKELDKVIRKELNAINKKY-- 477 Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKS-HSVDLSALHF 545 G R T + + + M+ +E + +++S+ G+++ SL+S ++ D Sbjct: 478 ----GSERLTVIQDEISSLKIETEVMVAQEDVMLLVSHDGYVKRSSLRSFNASDNDENGL 533 Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIV 603 K+ D + +T + + + G P ++ R GE + + L +++ ++ Sbjct: 534 KDEDYPILQSVVNTLSHLFIFTNKGNLIYRPIHEVIESRWKDTGEHLSQTVGLGNDEYVL 593 Query: 604 TAFVY---DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH 660 AFV+ D K L+ + +G V+ +A+ + G+T+ K + +KL K D Sbjct: 594 NAFVFESIDQDAKFLIATKEGYIKQVK----LADLKPGRTY-KTRASRYVKL--KTDADE 646 Query: 661 VAVVG--ENRKLLIF-----------SIDQIPEM-SRGKGVRLQSYKDGGISDVICFKIC 706 V V E+ K +F S+D++P + GV+ +D +++VI Sbjct: 647 VISVSQVESDKSQVFCASYTGYGLRYSLDEVPTNGALAAGVKCMDLRDDTLANVILVSES 706 Query: 707 EGLTWIDSAGRSYNR 721 + ++ + G SY + Sbjct: 707 DEVSILTQRG-SYKK 720 >gi|258544709|ref|ZP_05704943.1| DNA gyrase, A subunit [Cardiobacterium hominis ATCC 15826] gi|258520046|gb|EEV88905.1| DNA gyrase, A subunit [Cardiobacterium hominis ATCC 15826] Length = 888 Score = 380 bits (975), Expect = e-103, Method: Compositional matrix adjust. Identities = 227/611 (37%), Positives = 341/611 (55%), Gaps = 64/611 (10%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 + V V L + YL YA+S I RA+PD RDG KPVHRR++ +M + G + + K Sbjct: 35 KEVLPVRLEDEMRSSYLDYAMSVIVGRALPDARDGLKPVHRRVLFSMHKQGNAWNKKYVK 94 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 SA IVG+V+GK HPHGD ++YD+LVR+AQPF RYPL+ GQGNFG++DGD AAYRYTEA Sbjct: 95 SATIVGDVMGKYHPHGDSAIYDTLVRMAQPFSLRYPLVDGQGNFGSLDGDPPAAYRYTEA 154 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 RM ++A +L ++++ VDF Y+ EP V P++ PNLL NG+SGIAVGMAT++P H Sbjct: 155 RMAKIAHSLLTDIEKETVDFAPNYDGSQQEPTVLPTRVPNLLVNGSSGIAVGMATNVPPH 214 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 N+ E +A L L+D+P+ L+ Y+ GPDFPTG +I + I E+Y GRG +RA Sbjct: 215 NLGETLDACLHLLDHPDADTSALMRYLPGPDFPTGALI-NGAKGIREAYETGRGRIYIRA 273 Query: 255 RWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313 + +E + G IVV E+PYQV K+ L+ KIAEL+ K+I + +RDES +D ++ Sbjct: 274 KTHIETDDSNGKQTIVVDELPYQVNKANLLGKIAELVKEKKIDGITALRDESDKDGIRMV 333 Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373 R ++++ ++F L+ ++ F +NM L G+ P+++ L L+ ++AHRREV+ Sbjct: 334 IELRRGEVAEVILNNLFQLTQLQIVFGINMMALVGGQ-PRLLSLKEALQVFIAHRREVVT 392 Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR---------- 420 RRS + ++ R IL+GL IA NIDEII +IR P K +++R Sbjct: 393 RRSIYELRKARERAHILEGLAIALANIDEIIELIRASAGPAEAKEALLARGWTPGQVVDM 452 Query: 421 ------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLA 456 + L+ Q AIL+LRL L LE+ +I E ++ Sbjct: 453 LARAGAENSRPDGLGKQYGMRGDAYHLSPEQAQAILDLRLHRLTGLEQDKIIQEFQEIIH 512 Query: 457 EKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRT----TFCEVSRADKATLQQ 512 E E + +L ++ I E+ ++K F+ RRT T +S D Sbjct: 513 EIEALLEILQVPERLLAVIKEELLDIKNQFNDV-----RRTQILDTHLNLSLED------ 561 Query: 513 AMIEKEPITVVISNRGWIRSLKSHSVDL--------SALHFKEGDSLKIALHAHTTDRIL 564 +I +E + +S+ G+I++ + SA K+ D ++ + A+T D +L Sbjct: 562 -LIAEEDRVITLSHEGYIKAQPLADYEAQRRGGKGKSATAVKDEDFVEQLIVANTHDTML 620 Query: 565 LLSTDGKAYTL 575 + GK Y L Sbjct: 621 CFTNRGKVYWL 631 >gi|269125862|ref|YP_003299232.1| DNA topoisomerase [Thermomonospora curvata DSM 43183] gi|268310820|gb|ACY97194.1| DNA topoisomerase (ATP-hydrolyzing) [Thermomonospora curvata DSM 43183] Length = 833 Score = 380 bits (975), Expect = e-103, Method: Compositional matrix adjust. Identities = 224/568 (39%), Positives = 344/568 (60%), Gaps = 23/568 (4%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 EEN+ V + + +L YA S I RA+PD RDG KPV RRI+++M+EMGL Sbjct: 16 EENIIDVDVSEEMRGSFLEYAYSVIYSRALPDARDGLKPVQRRILYSMNEMGLRPDRGHV 75 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS-AAAYRYT 132 K AR+VGEV+GKLHPHGD ++YD++VR+AQP+ R PL+ G GNFG++ GD AA RYT Sbjct: 76 KCARVVGEVMGKLHPHGDSAIYDAMVRMAQPWAMRMPLVDGHGNFGSLGGDDLPAAMRYT 135 Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192 EAR++ A L++ +DE+ VDFR Y+ ++ EP V P+ FPNLL NG SGIAVGMAT++ Sbjct: 136 EARLSNEAMLMVDAIDEETVDFRPNYDGQEREPEVLPAAFPNLLVNGASGIAVGMATNMA 195 Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252 HN+ E+ AA L+++P+ ++E+L++++ GPD PTGGIIV E I ++Y GRG FR+ Sbjct: 196 PHNLGEVVAAARHLLEHPDATLEELMQFVPGPDLPTGGIIV-GLEGIRDAYAKGRGTFRM 254 Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD--ESAEDVR 310 RA +E V IVVTE+PY V R+I KI +L+ AK++ + D++D + +R Sbjct: 255 RATARIENVTPRRKGIVVTELPYGVGPERVIAKIKDLVQAKKLTGISDLKDLTDRTTGLR 314 Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370 +V+ KN +P+ ++ ++ L+ ME F +N L G+ P+ + L +L+ ++ HR E Sbjct: 315 LVIEVKN-GFNPEAVLAELYRLTPMEETFGINNVALVDGQ-PRTLGLRELLQVYVDHRLE 372 Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQ 427 V+ RRS FR + R+ +++GLL+A LNIDE+IAIIR+ D + K ++ F L+E Q Sbjct: 373 VVRRRSEFRRRKRQERLHLVEGLLVALLNIDEVIAIIRDSDDSAQAKRRLMETFELSEIQ 432 Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487 IL+ LR L + + +++ E + L E ++ ++L S ++ +A E+ EV + FS Sbjct: 433 AQYILDTPLRRLTRFDRLELEKESEQLGKEIARLTAILESDRKLRKLVAKELGEVAKKFS 492 Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKE 547 RRT E S A + EP V++S+ G + + + L + Sbjct: 493 TP-----RRTVLLE-SSGQTAAAVPLEVPDEPCLVLLSSTGLL----ARTAGPGPLPAES 542 Query: 548 G----DSLKIALHAHTTDRILLLSTDGK 571 G D L + A T + L+++ G+ Sbjct: 543 GSGPHDVLAAVVRATTRGEVGLVTSAGR 570 >gi|78779457|ref|YP_397569.1| DNA gyrase subunit A [Prochlorococcus marinus str. MIT 9312] gi|78712956|gb|ABB50133.1| DNA gyrase subunit A [Prochlorococcus marinus str. MIT 9312] Length = 863 Score = 380 bits (975), Expect = e-103, Method: Compositional matrix adjust. Identities = 228/639 (35%), Positives = 364/639 (56%), Gaps = 35/639 (5%) Query: 7 SNSNTLVEENVKAVS--LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEM 64 S ++ L E+N + + LR + YL YA+S I RA+PD RDG KPVHRRI++AM E+ Sbjct: 7 SGNSGLSEDNDRIIQTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYEL 66 Query: 65 GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124 GL G ++K AR+VGEV+GK HPHGD +VYD+LVR+AQ F R PLI G GNFG++D D Sbjct: 67 GLTSGRPYRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRMPLIDGHGNFGSVDND 126 Query: 125 SAAAYRYTEARMTQVA-ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183 AA RYTE+R+ + E +L+ ++ + VDF D ++ EP V P++ P LL NG+SGI Sbjct: 127 PPAAMRYTESRLQSLTDESLLEDIESETVDFSDNFDGSQQEPTVLPARIPQLLLNGSSGI 186 Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243 AVGMAT+IP HN+ E+ ++I+NP I +L E I GPDFPTGG I+ R+ I E++ Sbjct: 187 AVGMATNIPPHNLGELINGLKSIINNPSIEDRELFELIKGPDFPTGGQIL-GRDGIRETF 245 Query: 244 RLGRGGFRVRARWCVEEV---GRGSW-CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299 + GRG +R +E++ GR +++TE+P+Q K+ LIE+IA+L+ +++ + Sbjct: 246 KTGRGSITMRGVANIEQIKSAGRAEKDAVIITELPFQTNKAGLIERIADLVNERKLEGIS 305 Query: 300 DIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359 DIRDES D ++ R P +++ ++F L+ ++ F N+ L G P + L Sbjct: 306 DIRDESDRDGMRIVIELKRDAYPQVVLNNLFKLTPLQNNFSANILALVKGE-PTTLSLRR 364 Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPV 416 +L +L R E + RR+ F ++ + R I+KGLL+A +DEII +IR+ + Sbjct: 365 MLDVFLDFRVETIRRRTGFLLRKAEERDHIVKGLLLALDAMDEIINLIRSAKDTISAREK 424 Query: 417 MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476 + + L+ Q +AIL ++LR L LE +IK+E D L + + +LNS ++ + I Sbjct: 425 LQTDHELSSTQAEAILQMQLRRLTALEADKIKAEHDELTKKINQYQQILNSKERIFEIIL 484 Query: 477 CEIREVKEIFSKSTDLGRRRTTFCEVSRA-DKATLQQAMIEKEPITVVISNRGWIRSLKS 535 E+ ++ E FS R+T ++ D L I + V+++ G+++ + Sbjct: 485 EELNKIDERFSSP-----RKTEILDLGGGLDDIDL----IANDRSVVLLTEAGYLKRMPV 535 Query: 536 HSVDLSA--------LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL-LSGR-G 585 + + ++ + D +K+ + + D +LL S G AY LPA + +S R Sbjct: 536 NEFESTSRGSRGKAGTKTQGDDEVKLFISCNDHDTLLLFSDRGVAYALPAYRVPMSSRTA 595 Query: 586 HGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKG 621 G L+ + + I + +D+ C LL+++ G Sbjct: 596 KGTPSVQLLPIPREEKITSLVAVDSFDNDCYLLMLTKSG 634 >gi|260654340|ref|ZP_05859830.1| DNA gyrase, A subunit [Jonquetella anthropi E3_33 E1] gi|260630973|gb|EEX49167.1| DNA gyrase, A subunit [Jonquetella anthropi E3_33 E1] Length = 836 Score = 380 bits (975), Expect = e-103, Method: Compositional matrix adjust. Identities = 234/665 (35%), Positives = 382/665 (57%), Gaps = 30/665 (4%) Query: 15 ENVKAVSLRFALEE---RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71 +N+ V++ +EE YL YA+S I RA+PD RDG KPV RRI++AM +G+ Sbjct: 6 DNLGRVTVHPLVEEIKHSYLDYAMSVIVGRALPDARDGLKPVQRRILYAMMGLGIKHNQP 65 Query: 72 FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131 +KKSAR+VGE +GK HPHGD ++Y+++VRLAQ + RYPL+ GQGNFG+IDGDSAAA RY Sbjct: 66 YKKSARVVGETMGKYHPHGDSAIYETMVRLAQEWSMRYPLVDGQGNFGSIDGDSAAAMRY 125 Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191 TEAR + EL+L +DED VD+ ++E EP+ PS PNLL NG++GIAVGMAT++ Sbjct: 126 TEARFAETGELMLADIDEDTVDWGPNFDESLKEPLTLPSALPNLLINGSTGIAVGMATNM 185 Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251 HN+ E+ +A LI P+ ++ L+ + GPDFPTGGII+ RE I+++YR GRG Sbjct: 186 APHNLGEVVDALRLLIRRPDAELDDLMSCLPGPDFPTGGIIM-GREGILDAYRTGRGKII 244 Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311 +R + VE+ R +V+TEIPY + K+ LIE I + + K+I + DIRDES Sbjct: 245 LRGKCHVEQKSRSKTNVVITEIPYMINKTTLIESIVKGVQGKQIDGVSDIRDESDRKGLR 304 Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371 ++ R D +L+ ++ + +++ F + +N+ + P + L +L+ +L +RR V Sbjct: 305 LVVELTREADAELVQRQLYSRTSLQSTFGI-INLALVDNKPVELNLKQLLETFLNYRRSV 363 Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQV 428 + RR+ FR+ + R I++GL A ID++IAIIR D K ++ + T+ Q Sbjct: 364 VRRRTQFRLDKAEARRHIVEGLCKALDVIDQVIAIIRGAQTADDAKAGLIGELAFTDLQA 423 Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488 AIL++RL+ L LE ++ +EL LLA+ E+ S+L++ I E+ E++ F+ Sbjct: 424 QAILDMRLQRLTGLEREKLLAELAQLLADIERYRSILDNPSVLDGVINDELGELRRKFAD 483 Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSVD------- 539 RRT + +L+ ++ +E I V +S G++R L+++++ Sbjct: 484 E-----RRTELSAALPTEGDSLED-LLPEEDILVTLSKDGFLRRSPLENYNLQNRGGKGR 537 Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL--SGRGHGEAIQLLIDLN 597 L A+ K+ D + T I L ++ G+ + + G+++ + G G A+ + L Sbjct: 538 LGAV-LKDDDEVGQMAVTSTHSDIFLFTSRGRVFAI-RGHMIPETKTGKGRAVSKFVSLT 595 Query: 598 HNQDIVT---AFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654 ++ +V +T LL ++ +G ++ E+ TR G+ L + +++ ++ Sbjct: 596 DDERVVAMRGTLEETATSHLLFITKRGIGKRMDAEELENLTRAGRRVLSLDDGDEIAAII 655 Query: 655 KVTGD 659 G+ Sbjct: 656 DTDGN 660 >gi|325279425|ref|YP_004251967.1| DNA gyrase, A subunit [Odoribacter splanchnicus DSM 20712] gi|324311234|gb|ADY31787.1| DNA gyrase, A subunit [Odoribacter splanchnicus DSM 20712] Length = 840 Score = 380 bits (975), Expect = e-103, Method: Compositional matrix adjust. Identities = 227/611 (37%), Positives = 354/611 (57%), Gaps = 34/611 (5%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 E + +++ ++ Y+ Y++S I RA+PD+RDG KPVHRR++ M E+GL G +KK Sbjct: 6 EKIIKINIEEEMKSSYIDYSMSVIVSRALPDVRDGLKPVHRRVLFGMDELGLTSGKPYKK 65 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 SARIVGEV+GK HPHGD SVY ++VR+AQ + RYPL+ GQGNFG++DGDS AA RYTEA Sbjct: 66 SARIVGEVLGKYHPHGDSSVYMAMVRMAQEWSLRYPLVDGQGNFGSVDGDSPAAMRYTEA 125 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 RM ++ E +L +D+D VD D ++ EP V P++ P LL NG SGIAVGMAT++P H Sbjct: 126 RMAKITEDMLVDIDKDTVDMMDNFDGSLKEPTVLPTRIPYLLVNGASGIAVGMATNMPPH 185 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 N+++ +A A IDN +I IE+L++ I PDFPTGG I + ESY GRG +R Sbjct: 186 NIKDAIDAICAYIDNNDIDIEELIKIIKAPDFPTGGTIY-GYSGVRESYLTGRGRVVIRP 244 Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVL 313 + VE + G ++V EIPY V K+ LI +IA+LI K+I + +I DES E +RIV+ Sbjct: 245 KTSVEVMPNGREKLIVHEIPYMVNKAELISRIADLINEKKIDGISNINDESDREGMRIVI 304 Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373 K ++ ++++ ++ + +++ F +N L GR P+++ L I++ ++ HR +V+ Sbjct: 305 DIKKDAI-SNVVLNTLLKHTALQSSFGVNNVALVHGR-PRLLNLKDIIRYFVEHRHDVVV 362 Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVDA 430 RR+ F ++ + R IL+GL+IA +IDE+I +IR P + ++ FSLT+ Q A Sbjct: 363 RRTQFELRKAEERAHILEGLIIASDHIDEVIRLIRASKTPQDAQAALMDAFSLTDKQAAA 422 Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK-EIFSKS 489 I+ +RL L LE+ D L AE E I+ L+ + + +K E+ + Sbjct: 423 IVAMRLGQLTGLEQ-------DKLRAEYEDIEKLIAHLNDVLAHVELRMEIIKNELLAVK 475 Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSVD------LS 541 G R T ++ A + + E + + IS+ G+I+ L + V Sbjct: 476 AQYGDDRRT--DIVYASEEFNPEDFYADEEMVITISHMGYIKRTPLSEYKVQNRGGVGSK 533 Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKA-----YTLPAGNLLSGRGHGEAIQLLIDL 596 ++ D L+ + A + +L + GK Y +P G + + G AIQ L+++ Sbjct: 534 GSATRDEDFLEHMIMATMHNTMLFFTEKGKCFWLKVYEIPEG---TKQSKGRAIQNLLNI 590 Query: 597 NHNQDIVTAFV 607 + D V A++ Sbjct: 591 EPD-DKVKAYI 600 >gi|56551588|ref|YP_162427.1| DNA gyrase subunit A [Zymomonas mobilis subsp. mobilis ZM4] gi|56543162|gb|AAV89316.1| DNA gyrase, A subunit [Zymomonas mobilis subsp. mobilis ZM4] Length = 925 Score = 380 bits (975), Expect = e-103, Method: Compositional matrix adjust. Identities = 230/605 (38%), Positives = 333/605 (55%), Gaps = 48/605 (7%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 ++ VS+ ++ YL YA+S I RA+PD+RDG KPVHRRI+ A E G G ++KS Sbjct: 41 DISPVSIIDEMKSSYLDYAMSVIVSRALPDVRDGLKPVHRRILFASQEGGFVPGHPYRKS 100 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 A+IVGEV+G HPHGD ++Y +L RL Q + R PLI GQGNFG++D D AA RYTEAR Sbjct: 101 AKIVGEVMGNFHPHGDSAIYMALARLTQDWSMRVPLIDGQGNFGSMDPDGPAAMRYTEAR 160 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 ++ A ++L +D D VDF Y+ EP V P++FPNLL NG GIAVGMAT+IP HN Sbjct: 161 LSPAAMMLLADIDRDTVDFSPNYDGSRQEPQVLPARFPNLLVNGAGGIAVGMATNIPPHN 220 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 + E+ A A I +P ISIE L+ + GPDFPTGG+++ + +Y+ GRG +R+R Sbjct: 221 LGEVLTACRAYIADPAISIEDLIRLVPGPDFPTGGVML-GQGGARSAYQNGRGSIIIRSR 279 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLF 314 + +EE IV+TEIPYQ+ KS L+EKIAE KR+ + DIRDES E VR+V+ Sbjct: 280 YNIEEKHGDRRSIVLTEIPYQIGKSALVEKIAEAAKDKRVEGISDIRDESNREGVRVVID 339 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K R PD+++ ++ + ++ FP NM L+ GR P+ M L I+ ++ R EV+ R Sbjct: 340 LK-RDATPDVVLNQLWRHTPAQSSFPANMLALNGGR-PETMSLKDIIAAFVQFREEVITR 397 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK-----------PVM------ 417 RS + + R +L G++IA N+DE++ IIRN P PV Sbjct: 398 RSKYDLFKARERAHLLLGMVIAVTNLDEVVRIIRNAPSPAEAHSELSARKWPVNDVLPYI 457 Query: 418 -----------VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466 ++L++ QVDAIL LRL L + QI EL L ++ +L Sbjct: 458 KLIEAVEDFEESGLYTLSKAQVDAILALRLSRLTAMGRDQIGEELKKLAISISELLEVLR 517 Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526 + ++ + + E V+ F+ RRT ++ A A + +IE+E + V +++ Sbjct: 518 NRERLYEIMVEEFDAVEAQFATP-----RRT---QIVAASDAIEDEDLIEREEMVVTVTH 569 Query: 527 RGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAG 578 G+I R+ S + K+ D++ T +L S GK Y L Sbjct: 570 GGYIKRTPLDTFRTQNRGGKGRSGMATKDEDAVTNLFVTCTHTPVLFFSNHGKVYRLKVW 629 Query: 579 NLLSG 583 L G Sbjct: 630 RLPEG 634 >gi|148380729|ref|YP_001255270.1| DNA topoisomerase, GyrA/ParC subunit family [Clostridium botulinum A str. ATCC 3502] gi|153931559|ref|YP_001385013.1| DNA topoisomerase IV subunit A [Clostridium botulinum A str. ATCC 19397] gi|153937418|ref|YP_001388483.1| DNA topoisomerase IV subunit A [Clostridium botulinum A str. Hall] gi|148290213|emb|CAL84332.1| DNA gyrase subunit A [Clostridium botulinum A str. ATCC 3502] gi|152927603|gb|ABS33103.1| DNA topoisomerase, GyrA/ParC subunit family [Clostridium botulinum A str. ATCC 19397] gi|152933332|gb|ABS38831.1| DNA topoisomerase, GyrA/ParC subunit family [Clostridium botulinum A str. Hall] Length = 956 Score = 380 bits (975), Expect = e-103, Method: Compositional matrix adjust. Identities = 227/631 (35%), Positives = 376/631 (59%), Gaps = 33/631 (5%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 + N+ + L A+ E YL YA+ KERA+PD+RDG KPV RRI++ + + Sbjct: 10 DNNIISFPLEEAMPENYLPYAVEVSKERALPDVRDGLKPVQRRIVYGSYMLKAFPDKPYY 69 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSARIVG+++GK HPHGD SVYD++V LAQ F R PLI G GN+G+ DGDSAAA RYTE Sbjct: 70 KSARIVGDILGKYHPHGDSSVYDAMVILAQDFTTRMPLIDGHGNWGSQDGDSAAAMRYTE 129 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 AR+T +A +++ +D+D V+ D Y+ + EP V P+KFPN+L NG GIAVG+AT+IP Sbjct: 130 ARLTPIAMEMIRDIDKDVVNMVDNYSNSEKEPEVLPAKFPNILVNGAFGIAVGLATNIPP 189 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN++E+ + LA ID EI+ ++LL YI GPD PTGG+I+ ++S++ +Y G G +R Sbjct: 190 HNLEEVIDGTLAYIDKNEITTKELLNYIKGPDLPTGGVII-GKKSMLSAYETGEGRVTLR 248 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR----IPLLEDIRDESAED- 308 A+ +E++ G IV+TE P++ K++L++ I+E+ K+ + + DIRDES + Sbjct: 249 AKTTIEKLENGRLAIVITEFPFRKNKAKLLQFISEMTADKKHSKALENITDIRDESDRNG 308 Query: 309 VRIVL-FPKNRSLDP-DLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366 +R V+ F K + D + ++ ++ +D+++ NM L+ G+ P+ + L +L+ ++ Sbjct: 309 IRAVIEFKKIATQDVIEKTLKYLYKKTDLQSNISFNMVALADGK-PKTLGLKAMLEYYVE 367 Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSL 423 H++EV+ RR+ ++ ++R I++G + A +DEII IR K ++ +FS Sbjct: 368 HQKEVITRRTKRELEIAEKRFHIVEGFIKAIGIMDEIIKTIRESKSKKNARENLMEKFSF 427 Query: 424 TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483 T+ Q +AIL L L L LE + E L K+ +LNS K+ I E+ EVK Sbjct: 428 TDVQAEAILELMLYKLTGLEIVAFEKEYKELEKLINKLKKILNSEKELLKVIKKELIEVK 487 Query: 484 EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSH---SV 538 E ++ +RRT+ E K +++ ++E++ + + +SN G+ + SLKS+ S Sbjct: 488 ETYN-----DKRRTSIIEDDEKAKIDIEEIIVEED-VVLTLSNEGFAKRISLKSYNRSSA 541 Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL-----L 593 ++ + ++EGD + + +T D + L++ +G Y + N+ + + ++L Sbjct: 542 NVEDIEYREGDFNRFLIQCNTKDTLCLVTKEGNMYQIKVINIPEFKWKEKGVRLDEIIKT 601 Query: 594 IDLNHNQDIVTAF-VYDSTCK--LLVVSSKG 621 IDL ++ I+ AF + D T + +L ++ G Sbjct: 602 IDL--SETIMEAFSIEDFTAQKDMLFITDSG 630 >gi|302554636|ref|ZP_07306978.1| DNA gyrase, A subunit [Streptomyces viridochromogenes DSM 40736] gi|302472254|gb|EFL35347.1| DNA gyrase, A subunit [Streptomyces viridochromogenes DSM 40736] Length = 818 Score = 380 bits (975), Expect = e-103, Method: Compositional matrix adjust. Identities = 215/523 (41%), Positives = 320/523 (61%), Gaps = 15/523 (2%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 EE + + + ++ +L YA S I RA+PD RDG KPVHRRI++ MSEMGL + Sbjct: 16 EERILDIDVVDEMQGSFLEYAYSVIYSRALPDARDGLKPVHRRIVYQMSEMGLRPERGYV 75 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYT 132 K AR+VGEV+GKLHPHGD S+YD+LVR+AQPF R PL+ G GNFG++ + D AA RYT Sbjct: 76 KCARVVGEVMGKLHPHGDASIYDALVRMAQPFSMRVPLVDGHGNFGSLGNDDPPAAMRYT 135 Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192 E RM + L+ +DED VDF Y+ ++ EPV P+ FPNLL NG SGIAVGMAT++P Sbjct: 136 ECRMAEATSLMTDSIDEDTVDFNPNYDGQEQEPVALPAAFPNLLVNGASGIAVGMATNMP 195 Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252 HN++E+ AA LI +P ++ L++++ GPD PTGG IV I ++Y GRG F++ Sbjct: 196 PHNLREVIAAARHLIRHPNADLDALMKHVPGPDLPTGGRIV-GLSGIRDAYETGRGTFKM 254 Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD--ESAEDVR 310 RA VE V +VVTE+P+ V ++I KI +L+ +K+I + D++D + A +R Sbjct: 255 RATVSVEPVTARRKGLVVTELPFAVGPEKVIAKIKDLVGSKKIQGIADVKDLTDRAHGLR 314 Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370 +V+ KN P+ ++E ++ L+ ME F +N L G+ P + L +L+ +L HR Sbjct: 315 LVIEIKN-GFVPEAVLEQLYKLTAMEESFGINNVALVDGQ-PLTLGLKELLEVYLDHRFT 372 Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQ 427 V+ RRS FR R+ +++GLL A L+IDE+I +IR N + K ++ +FSL++ Q Sbjct: 373 VVRRRSEFRRGKKRDRLHLVEGLLTALLDIDEVIRLIRSSENSAQAKQRLMEQFSLSDVQ 432 Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487 IL+ LR L K + ++++E D L AE E++ +L S + ++ E+ V + F Sbjct: 433 TQYILDTPLRRLTKYDRIELETEKDRLNAEIEELTRILESDAELRKLVSSELATVAKKF- 491 Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI 530 TD RRT E A AT+ + +P V++S+ G + Sbjct: 492 -GTD---RRTDLLESGGAPVATV-PLQVADDPCRVLLSSTGLL 529 >gi|209523648|ref|ZP_03272202.1| DNA topoisomerase (ATP-hydrolyzing) [Arthrospira maxima CS-328] gi|209496053|gb|EDZ96354.1| DNA topoisomerase (ATP-hydrolyzing) [Arthrospira maxima CS-328] Length = 876 Score = 380 bits (975), Expect = e-103, Method: Compositional matrix adjust. Identities = 253/739 (34%), Positives = 395/739 (53%), Gaps = 82/739 (11%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 V SL +++ YL YA+S I RA+PD+RDG KPVHRRI++AM E+GL ++K A Sbjct: 12 VIPTSLTNEMQQSYLEYAMSVIVGRALPDVRDGLKPVHRRILYAMHELGLTPDRPYRKCA 71 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+V+GK HPHGDQSVYD+LVRL Q F RYPL++G GNFG++D D AA RYTE R+ Sbjct: 72 RVVGDVLGKYHPHGDQSVYDALVRLVQEFSSRYPLLAGHGNFGSVDNDPPAAMRYTETRL 131 Query: 137 TQVA-ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 + E +L V E VDF ++ EP V P++ P L+ NG+SGIAVGMAT+IP HN Sbjct: 132 AAIGNEGLLTQVGEATVDFTSNFDNSQQEPTVLPAQLPFLILNGSSGIAVGMATNIPPHN 191 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 + E+ + +ALID+P++S +KL++ I GPDFPTGG IV + I E+Y GRG +R Sbjct: 192 LGEVVDGLIALIDHPDLSDQKLMQLIPGPDFPTGGEIVAT-AGIAEAYTSGRGSIVMRGV 250 Query: 256 WCVEEV-----GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDV 309 +E+V R IVVTE+P+QV K+ IEK+A L+ A ++ + DIRDES E + Sbjct: 251 AKIEQVPTAGRKRTKNAIVVTELPFQVNKAGWIEKVAVLVNAGKLEGISDIRDESDREGI 310 Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369 R+V+ K R P++++ +++ +D+ ++F L + P+ + L IL+E+L R Sbjct: 311 RVVIELK-REATPEVVLHNLYQHTDLMSKFGAIFLAL-VNSQPRQLSLKQILQEFLGFRE 368 Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTEN 426 + L RR +Q +RR ++ GLL A +DE+I I+RN +S R LT Sbjct: 369 QTLLRRYRSELQIAERRALMVGGLLKALAALDEVIEILRNAPDGTSAKISLETRLDLTGE 428 Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486 Q D IL + LR L +LE +++ E L A+ +++ LL+ + + E+R +K + Sbjct: 429 QADTILAMPLRRLTQLEGQKLQQEAAELAAQIDRLRLLLSERAELLKSLKKELRSLKRRY 488 Query: 487 SKSTDLGRRRTTFC----------------EVSRADKAT----LQQAMIEKEPITVVISN 526 S RRT EV + K T L+ + E V ++ Sbjct: 489 SDP-----RRTRIVSSEPQESPSVSVPSSQEVHPSSKPTKSKILRPQLPAVEETLVEMTL 543 Query: 527 RGWIRSLKSHSVDLSALHFKEG------DSLKIALHAHTT-DRILLLSTDGKAYTLPAGN 579 +G++R + + LS +E D +A + TT + +++++ GKAY L + Sbjct: 544 KGYVRRVTPSA--LSRPQSREDITIEAIDDFPVASYLTTTAETLVIINRMGKAYPLSVAD 601 Query: 580 L--LSGRGHGEAIQLLIDLNHNQD--------IVTAF----------------------V 607 + +S + G + L+ + +D IV AF Sbjct: 602 IPSVSQKSRGVPLITLLSPSATKDASSRPQDLIVAAFAGAGLQSSPLRRTTDGGTSPKSA 661 Query: 608 YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV-VKVTGDHVAVVGE 666 + L+++S++G ++ + + +G T +K+ +++ + TGD V + Sbjct: 662 FSPETDLIMLSAEGKIKRFSGTDFMDLSARGITVMKLKDNDELSYANLAATGDQVVLATS 721 Query: 667 NRKLLIFSID--QIPEMSR 683 +LL I+ QIP M R Sbjct: 722 GGRLLRLDINSEQIPVMGR 740 >gi|157060390|gb|ABV03201.1| GyrA [Chlamydia trachomatis] Length = 492 Score = 380 bits (975), Expect = e-103, Method: Compositional matrix adjust. Identities = 209/485 (43%), Positives = 301/485 (62%), Gaps = 18/485 (3%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 EE + +L ++E YL Y++S I RA+PD RDG KP RRI++AM ++ L G + Sbjct: 5 EEIIVPKNLEEEMKESYLRYSMSVIISRALPDARDGLKPSQRRILYAMKQLNLTPGVKHR 64 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 K A+I G+ G HPHG++ +Y +LVR+AQ + RYPL+ GQGNFG+IDGD AAA RYTE Sbjct: 65 KCAKICGDTSGDYHPHGERVIYPTLVRMAQDWAMRYPLVDGQGNFGSIDGDPAAAMRYTE 124 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 AR+T A +L+ +D+D VD Y+E EPVVFPSKFPNLL NG+SGIAVGMAT+IP Sbjct: 125 ARLTHSAIFLLEDLDKDTVDMVPNYDETKYEPVVFPSKFPNLLCNGSSGIAVGMATNIPP 184 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E+ EA L ++ N + SIE +LE + GPDFPTGGII + E I +Y GRG R+R Sbjct: 185 HNLGELIEATLLVLANSQTSIEDILEVMPGPDFPTGGIICGT-EGIRSTYYTGRGKLRLR 243 Query: 254 ARWCVEE-VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRI 311 AR VEE + I++TE+PY V KSRLIE+IAELI K + + D+RDES +D +R+ Sbjct: 244 ARMHVEENSDKQRENIILTEMPYNVNKSRLIEQIAELINEKTLTGISDVRDESDKDGIRV 303 Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371 VL K + ++++ ++ +D++ F NM L +P+ M + ++ W+ HR +V Sbjct: 304 VLELK-KGESSEVVINRLYKFTDVQVTFGANMLALDKN-LPRTMNIHRMISAWIRHRMDV 361 Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQV 428 + RR+ + + + R IL+G L A +DE++ IR N++ K +V FS +E Q Sbjct: 362 IRRRTRYELNKAEARAHILEGFLKALSCMDEVVKTIRESSNKEHAKQQLVELFSFSEAQA 421 Query: 429 DAILNLRLRSLRKLEEYQIKSELDNL----------LAEKEKIDSLLNSGKQQWNQIACE 478 AIL LRL L LE +++ E L LAE+E + ++ Q+ +++ Sbjct: 422 LAILELRLYQLTGLEADKVQKEYSELLEKITYYRKVLAEEELVKDIIREELQELHKVHKT 481 Query: 479 IREVK 483 R K Sbjct: 482 PRRTK 486 >gi|157828149|ref|YP_001494391.1| DNA gyrase subunit A [Rickettsia rickettsii str. 'Sheila Smith'] gi|165932848|ref|YP_001649637.1| DNA gyrase subunit A [Rickettsia rickettsii str. Iowa] gi|157800630|gb|ABV75883.1| DNA gyrase subunit A [Rickettsia rickettsii str. 'Sheila Smith'] gi|165907935|gb|ABY72231.1| DNA gyrase subunit A [Rickettsia rickettsii str. Iowa] Length = 905 Score = 379 bits (974), Expect = e-103, Method: Compositional matrix adjust. Identities = 246/712 (34%), Positives = 388/712 (54%), Gaps = 63/712 (8%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 N+ V++ ++ YL YA+S I RAIPD+RDG KPVHRRII++M E G ++KS Sbjct: 8 NLVPVNIEDEMKVSYLDYAMSVIVSRAIPDVRDGLKPVHRRIIYSMHEAGNHANKPYRKS 67 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 ARIVG+V+GK HPHGD ++YD+LVR+AQ F R PL+ GQGNFG++DGD+AAA RYTE+R Sbjct: 68 ARIVGDVMGKYHPHGDSAIYDALVRMAQDFSLRLPLVDGQGNFGSMDGDAAAAMRYTESR 127 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 M +VA +++ +D++ V F Y+ + EP V P+ FPNLL NG+ GIAVGMAT+IP HN Sbjct: 128 MAKVAYKLVEDIDKETVSFNPNYDGSEEEPSVLPAMFPNLLVNGSGGIAVGMATNIPPHN 187 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 + E+ +A IDN +I I LLE + GPDFPTG +I+ I +Y GRG +R R Sbjct: 188 LGEVIDACCLYIDNNDIEILDLLEVVKGPDFPTGSMIL-GISGIRSAYLTGRGSIIIRGR 246 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314 +E +G I++TEIPY V K+RL+EKIA+++ KRI + D+RDES ++ VRI + Sbjct: 247 AEIENIGNSRQAIIITEIPYMVNKARLVEKIAQMVKEKRIEGISDLRDESNKNGVRIFIE 306 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K + + ++++ I+ + ++T F + M L G +P+VM L ++ +++ R V+ Sbjct: 307 LK-KDVVAEVVLNQIYACTQLQTSFGVIMLALKDG-LPKVMNLKEVIAAFVSFREVVVTN 364 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----------- 420 R+ + + R IL GL IA NIDEII II+ + P K +++R Sbjct: 365 RTIYLLNKARDRAHILLGLTIAVSNIDEIIRIIKASNDPNAAKQELMARQWEALNILPLV 424 Query: 421 --------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466 + TE Q AIL +RL+ L +E+ +++ +L NL E + ++L Sbjct: 425 KLVDDKAMLNEQGKCNFTEVQAKAILEMRLQRLTAMEKNKLEEDLKNLTTEITEYLNILG 484 Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526 S + + E+ +VKE F+ R T E D+ + +I++E + V ++ Sbjct: 485 SRTRLLEILKEELIKVKEEFATP------RLTSIEFGEFDQDI--EDLIQREEMVVTVTL 536 Query: 527 RGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAG 578 G+I R+ K S L ++ D T +L S G+ Y+L Sbjct: 537 GGYIKRVPLSSYRAQKRGGKGRSGLSMRDEDITTQVFVGSTHTPMLFFSNIGQVYSLKLY 596 Query: 579 NL-LSG-RGHGEAIQLLIDLNHNQDIVTAFVYD------STCKLLVVSSKGNAFIVEESE 630 L LS +G G + ++ L N+ I ++ ++KGN + S+ Sbjct: 597 KLPLSNPQGKGRPMVNILPLKANEHITNIMPLPENQDERDNLNIMFATAKGN---IRRSD 653 Query: 631 IIANTR---KGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQI 678 ++ + GK +++ ++K+ V D H+ + + K L F ++ + Sbjct: 654 LLDFKKLQSNGKIAIRLDEDDKLIDVKPCKEDEHILLATKAGKALRFPVESL 705 >gi|154486352|ref|ZP_02027759.1| hypothetical protein BIFADO_00161 [Bifidobacterium adolescentis L2-32] gi|154084215|gb|EDN83260.1| hypothetical protein BIFADO_00161 [Bifidobacterium adolescentis L2-32] Length = 904 Score = 379 bits (974), Expect = e-103, Method: Compositional matrix adjust. Identities = 245/729 (33%), Positives = 395/729 (54%), Gaps = 46/729 (6%) Query: 12 LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71 +V E V+ L+ + E YLAYA+S I +RA+PD+RDG KPVHRR+I+AM + G Sbjct: 35 MVGERVQKKDLQQEMRESYLAYAMSVIVDRALPDVRDGMKPVHRRVIYAMYDGGYRPDRG 94 Query: 72 FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131 + K AR+VGEV+GK HPHGD ++YD+LVR+AQ + RY L+ GQGNFG+ D AAA RY Sbjct: 95 YSKCARVVGEVMGKYHPHGDSAIYDTLVRMAQSWSMRYTLVDGQGNFGSPGDDPAAAMRY 154 Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191 TE RM +A +++ +D+D VDF Y+ + EP V P++FPNLL NG+SGIAVGMAT+I Sbjct: 155 TECRMAPLAMEMVRDIDKDTVDFLPNYDGKTQEPTVLPARFPNLLCNGSSGIAVGMATNI 214 Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYII----GPDFPTGGIIVESRESIVESYRLGR 247 P HN++E+ E +D+P+ S E+LL+ +I GPDFPTG I+ + I ++YR GR Sbjct: 215 PPHNMREVAEGVHWALDHPDASREELLDNLIRIIKGPDFPTGATIL-GHKGIEQAYRTGR 273 Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307 G +RA EE+ +G C+V+TE+PYQV RL+ I E + +I + D+RDE++ Sbjct: 274 GLITMRAVVNTEEI-KGRMCLVITELPYQVNPDRLVVSIREAVRDGKIQGIADMRDETSG 332 Query: 308 DV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365 R+VL K R P +++ +++ S ++ F NM L G VP+ + LD ++ W+ Sbjct: 333 RTGQRLVLVLK-RDAVPKVVLNNLYKHSQLQQTFGANMLALVDG-VPRTLSLDAFIRHWV 390 Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFS 422 H+ EV+ RR+++ + + R IL+G L A IDE+IA+IR + + ++ Sbjct: 391 NHQLEVIARRTAYLKREAEERDHILQGYLKALDMIDEVIALIRASESAETARTGLMDLLD 450 Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482 + E Q DAIL ++LR L LE +I E + L+ + + +L ++Q + E+ Sbjct: 451 VDEVQADAILAMQLRRLAALERQKILDEHNELMRKIADYNDILAKPERQRKIVGDEL--- 507 Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---- 538 EI +K D RRT S + +I +E + V +++ G+I+ K+ Sbjct: 508 DEIVAKYGD--ERRTKILPYSGEMNV---EDLIAEENVVVTVTHSGFIKRTKADEYRAQH 562 Query: 539 ----DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQL 592 + +E D + T + +L + G+ Y L A L G G+ + Sbjct: 563 RGGKGIKGAKLREDDVVDHFFLTSTHNWLLFFTNKGRVYRLKAYELPEGSRDSKGQHVAN 622 Query: 593 LIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649 L+ ++ I T YD L++ + G +E + + G +++ ++E Sbjct: 623 LLQFGPDETIQTVLSIPNYDVAKYLVLATRSGKVKKTALAEYDSPRQGGLIAVRLMTDEN 682 Query: 650 MKLVVKVTG-------DHVAVVGENRKLLIFSID--QIPEMSR-GKGVRLQSYKDGGISD 699 + ++ G D + +V + L F + Q+ M R GV+ ++DG + Sbjct: 683 GENADELIGAALCNADDDIILVSKQGMSLKFEANDEQLRPMGRQTAGVQGMKFRDG--DE 740 Query: 700 VICFKICEG 708 ++ + +G Sbjct: 741 LLAMDVVQG 749 >gi|239787338|emb|CAX83815.1| DNA gyrase subunit A [uncultured bacterium] Length = 890 Score = 379 bits (974), Expect = e-103, Method: Compositional matrix adjust. Identities = 249/748 (33%), Positives = 401/748 (53%), Gaps = 57/748 (7%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 +++K + L +++ YL YA+S I RA+PD+RDGFK VHRRI++ + +G D +K Sbjct: 8 DDIKRIPLEEEMKQSYLDYAMSVIVARALPDVRDGFKTVHRRILYVLKRLGFDHTKPHRK 67 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 SA IVGEV+GK HPHGD ++Y+++VR+AQ F PLI GQGNFG+IDGDSAAA RYTE+ Sbjct: 68 SALIVGEVMGKYHPHGDSAIYETMVRMAQDFSMSIPLIDGQGNFGSIDGDSAAAMRYTES 127 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 RM ++++ IL +D + V FR Y+ EP V P++ P++L NGTSGIAVGMAT+IP H Sbjct: 128 RMAKISKEILADLDCNTVAFRPNYDGSLQEPTVLPTRVPSMLLNGTSGIAVGMATNIPPH 187 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 N+ E+ +A AL++NP + + +++E++ GPDFPTGG I+ + I+ ++R GRG +R Sbjct: 188 NLGELLDACCALVENPLMELPEIMEFVKGPDFPTGGQILGT-SGILNAFRTGRGSIVMRG 246 Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVL 313 + VEE+ IVVTEIPYQV K++L+EKI EL K + + +IRDES +RIV+ Sbjct: 247 KASVEELKGDKEAIVVTEIPYQVNKAKLVEKIGELSRDKVVDGIGEIRDESNRHGIRIVI 306 Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373 K R + +++ ++ + ++ F N+ L G VPQ + L L +L R +V+ Sbjct: 307 EIK-RDGNSQVILNQLYKHTQLQMNFSANVLALVKG-VPQTLGLKASLTCFLEFRYDVIV 364 Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS-------------- 419 RR+ + ++ + IL G +A +ID++I +I+ K + + Sbjct: 365 RRTRYFLEKARDKAHILLGFALALSHIDQVITLIKAATDRKSALATLMHENWDAASIKSY 424 Query: 420 -------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLL-AEKEKIDSLL 465 + L+E Q +AIL+LRL L +E+ +IKS+L + + A +E ID +L Sbjct: 425 LALLQGPQAESGPYYRLSEIQANAILDLRLHKLTGMEQEEIKSDLQSTMDAIQEYID-IL 483 Query: 466 NSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVIS 525 ++ + E + +K + RR+ E+ A+ + +I E + V IS Sbjct: 484 GKPERVRKIMTDEFKTIKADYPTP-----RRS---EILPAEDDIEDEDLIPSEEMVVTIS 535 Query: 526 NRGWIR--SLKSHSVDL------SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPA 577 G+I+ L ++ L S + KE D ++ + A+T DR+L + G+ Y +P Sbjct: 536 FGGYIKRVPLSTYRAQLRGGKGRSGMTMKEEDYVQDIIVANTHDRLLFFTNIGQVYRIPV 595 Query: 578 GNLLSG--RGHGEAIQLLIDLNHNQDIVTAF----VYDSTCKLLVVSSKGNAFIVEESEI 631 L G + G AI ++ + ++ I + D LL ++SKG S+ Sbjct: 596 HQLPIGTPQAKGRAIINVLPIEKDEKITSILDVSKEMDDASTLLFITSKGQVRRNAVSDF 655 Query: 632 IANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSRGKGVRLQ 690 GK + + E + V D+ ++ + L I F + S ++ Sbjct: 656 ERIQSNGKRAMVLEDGETLIAVKTCRNDNTVLLNTRKGLFIRFDATDVRVFSGRTSTGVR 715 Query: 691 SYKDGGISDVICFKICEGLTWIDSAGRS 718 K +I + EG +D A R+ Sbjct: 716 GIKLAHDDTIISASVLEGFN-VDPAERA 742 >gi|157060370|gb|ABV03191.1| GyrA [Chlamydia trachomatis] Length = 494 Score = 379 bits (974), Expect = e-103, Method: Compositional matrix adjust. Identities = 209/485 (43%), Positives = 301/485 (62%), Gaps = 18/485 (3%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 EE + +L ++E YL Y++S I RA+PD RDG KP RRI++AM ++ L G + Sbjct: 5 EEIIVPKNLEEEMKESYLRYSMSVIISRALPDARDGLKPSQRRILYAMKQLNLTPGVKHR 64 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 K A+I G+ G HPHG++ +Y +LVR+AQ + RYPL+ GQGNFG+IDGD AAA RYTE Sbjct: 65 KCAKICGDTSGDYHPHGERVIYPTLVRMAQDWAMRYPLVDGQGNFGSIDGDPAAAMRYTE 124 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 AR+T A +L+ +D+D VD Y+E EPVVFPSKFPNLL NG+SGIAVGMAT+IP Sbjct: 125 ARLTHSAIFLLEDLDKDTVDMVPNYDETKYEPVVFPSKFPNLLCNGSSGIAVGMATNIPP 184 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E+ EA L ++ N + SIE +LE + GPDFPTGGII + E I +Y GRG R+R Sbjct: 185 HNLGELIEATLLVLANSQTSIEDILEVMPGPDFPTGGIICGT-EGIRSTYYTGRGKLRLR 243 Query: 254 ARWCVEE-VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRI 311 AR VEE + I++TE+PY V KSRLIE+IAELI K + + D+RDES +D +R+ Sbjct: 244 ARMHVEENSDKQRENIILTEMPYNVNKSRLIEQIAELINEKTLTGISDVRDESDKDGIRV 303 Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371 VL K + ++++ ++ +D++ F NM L +P+ M + ++ W+ HR +V Sbjct: 304 VLELK-KGESSEVVINRLYKFTDVQVTFGANMLALDKN-LPRTMNIHRMISAWIRHRMDV 361 Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQV 428 + RR+ + + + R IL+G L A +DE++ IR N++ K +V FS +E Q Sbjct: 362 IRRRTRYELNKAEARAHILEGFLKALSCMDEVVKTIRESSNKEHAKQQLVELFSFSEAQA 421 Query: 429 DAILNLRLRSLRKLEEYQIKSELDNL----------LAEKEKIDSLLNSGKQQWNQIACE 478 AIL LRL L LE +++ E L LAE+E + ++ Q+ +++ Sbjct: 422 LAILELRLYQLTGLEADKVQKEYSELLEKITYYRKVLAEEELVKDIIREELQELHKVHKT 481 Query: 479 IREVK 483 R K Sbjct: 482 PRRTK 486 >gi|157060372|gb|ABV03192.1| GyrA [Chlamydia trachomatis] gi|157060374|gb|ABV03193.1| GyrA [Chlamydia trachomatis] gi|157060376|gb|ABV03194.1| GyrA [Chlamydia trachomatis] gi|157060378|gb|ABV03195.1| GyrA [Chlamydia trachomatis] gi|157060380|gb|ABV03196.1| GyrA [Chlamydia trachomatis] gi|157060382|gb|ABV03197.1| GyrA [Chlamydia trachomatis] gi|157060384|gb|ABV03198.1| GyrA [Chlamydia trachomatis] gi|157060386|gb|ABV03199.1| GyrA [Chlamydia trachomatis] gi|157060388|gb|ABV03200.1| GyrA [Chlamydia trachomatis] Length = 493 Score = 379 bits (974), Expect = e-103, Method: Compositional matrix adjust. Identities = 209/485 (43%), Positives = 301/485 (62%), Gaps = 18/485 (3%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 EE + +L ++E YL Y++S I RA+PD RDG KP RRI++AM ++ L G + Sbjct: 5 EEIIVPKNLEEEMKESYLRYSMSVIISRALPDARDGLKPSQRRILYAMKQLNLTPGVKHR 64 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 K A+I G+ G HPHG++ +Y +LVR+AQ + RYPL+ GQGNFG+IDGD AAA RYTE Sbjct: 65 KCAKICGDTSGDYHPHGERVIYPTLVRMAQDWAMRYPLVDGQGNFGSIDGDPAAAMRYTE 124 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 AR+T A +L+ +D+D VD Y+E EPVVFPSKFPNLL NG+SGIAVGMAT+IP Sbjct: 125 ARLTHSAIFLLEDLDKDTVDMVPNYDETKYEPVVFPSKFPNLLCNGSSGIAVGMATNIPP 184 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E+ EA L ++ N + SIE +LE + GPDFPTGGII + E I +Y GRG R+R Sbjct: 185 HNLGELIEATLLVLANSQTSIEDILEVMPGPDFPTGGIICGT-EGIRSTYYTGRGKLRLR 243 Query: 254 ARWCVEE-VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRI 311 AR VEE + I++TE+PY V KSRLIE+IAELI K + + D+RDES +D +R+ Sbjct: 244 ARMHVEENSDKQRENIILTEMPYNVNKSRLIEQIAELINEKTLTGISDVRDESDKDGIRV 303 Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371 VL K + ++++ ++ +D++ F NM L +P+ M + ++ W+ HR +V Sbjct: 304 VLELK-KGESSEVVINRLYKFTDVQVTFGANMLALDKN-LPRTMNIHRMISAWIRHRMDV 361 Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQV 428 + RR+ + + + R IL+G L A +DE++ IR N++ K +V FS +E Q Sbjct: 362 IRRRTRYELNKAEARAHILEGFLKALSCMDEVVKTIRESSNKEHAKQQLVELFSFSEAQA 421 Query: 429 DAILNLRLRSLRKLEEYQIKSELDNL----------LAEKEKIDSLLNSGKQQWNQIACE 478 AIL LRL L LE +++ E L LAE+E + ++ Q+ +++ Sbjct: 422 LAILELRLYQLTGLEADKVQKEYSELLEKITYYRKVLAEEELVKDIIREELQELHKVHKT 481 Query: 479 IREVK 483 R K Sbjct: 482 PRRTK 486 >gi|121594805|ref|YP_986701.1| DNA gyrase subunit A [Acidovorax sp. JS42] gi|120606885|gb|ABM42625.1| DNA gyrase subunit A [Acidovorax sp. JS42] Length = 888 Score = 379 bits (974), Expect = e-103, Method: Compositional matrix adjust. Identities = 227/618 (36%), Positives = 348/618 (56%), Gaps = 60/618 (9%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 +SL + YL YA+S I RA+PD RDG KPVHRR++ AM E+ D+ +KKSARIV Sbjct: 22 ISLEEEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHELNNDWNRPYKKSARIV 81 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGD +VYD++VR+AQ F R+ L+ GQGNFG++DGDSAAA RYTE R++++ Sbjct: 82 GDVIGKYHPHGDSAVYDTIVRMAQDFSLRHMLVDGQGNFGSVDGDSAAAMRYTEIRLSKI 141 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A +L +D++ VDF Y+ + EP+V PSK PNLL NG++GIAVGMAT+IP HN+ E+ Sbjct: 142 AHEMLADIDKETVDFGPNYDGSEKEPLVLPSKLPNLLVNGSAGIAVGMATNIPPHNLNEV 201 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 +A L L+ P+ ++++L+E I PDFPT GII + E YR GRG +RA+ E Sbjct: 202 VDACLHLLRQPDATVDELMEIIPAPDFPTAGIIY-GINGVKEGYRTGRGKVVMRAKCHFE 260 Query: 260 EVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318 ++ +G I+V E+PYQV K L E++AEL+ K++ + I+DES + ++ R Sbjct: 261 DIDKGQRQAIIVDELPYQVNKKTLQERMAELVHEKKLEGISHIQDESDKSGMRLVIELKR 320 Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378 P++++ +++ + ++ F +NM L G+ P++ L +++ +L HRREV+ RR+ F Sbjct: 321 GEVPEVVLNNLYKQTQLQDTFGMNMVALVDGQ-PKLCNLKDLIEVFLQHRREVVTRRTVF 379 Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIR------------------------------ 408 ++ R +L+GL +A NIDE I IIR Sbjct: 380 ELRKARERGHVLEGLAVALANIDEFIRIIRESPTPPVAKAELMARSWDSQLVREMLTRTR 439 Query: 409 ------NEDKPKPVMVSR---------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453 N D +P + R + L++ Q IL +RL+ L LE+ +I +E + Sbjct: 440 ADGGVVNADDYRPEGLEREFGMQEGGLYRLSDTQAQEILQMRLQRLTGLEQDKIVAEYKD 499 Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513 +++ E + +L + I E+ +++ F +S +G RR+T E S D +T + Sbjct: 500 VMSVIEDLLDILAKPARVSTIIGEELSTLRQEFGQSK-VGARRSTI-EHSAQDLST--ED 555 Query: 514 MIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565 +I + V +S+ G+I R+ K A KE D + A+T D IL Sbjct: 556 LITPTDMVVTLSHTGYIKSQPLSEYRAQKRGGRGKQAAATKEDDWIDQLFIANTHDYILC 615 Query: 566 LSTDGKAYTLPAGNLLSG 583 S G+ Y L + SG Sbjct: 616 FSNRGRLYWLKVWEVPSG 633 >gi|86609072|ref|YP_477834.1| DNA gyrase subunit A [Synechococcus sp. JA-2-3B'a(2-13)] gi|86557614|gb|ABD02571.1| DNA gyrase, A subunit [Synechococcus sp. JA-2-3B'a(2-13)] Length = 842 Score = 379 bits (974), Expect = e-103, Method: Compositional matrix adjust. Identities = 228/654 (34%), Positives = 361/654 (55%), Gaps = 31/654 (4%) Query: 19 AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78 + L+ + + YL YA+S I RA+PD RDG KPVHRRI++AM E+GL F+K AR+ Sbjct: 12 STDLQREMSQSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMHELGLTADRPFRKCARV 71 Query: 79 VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138 VG+VIGK HPHGDQ+VYD+LVR+AQ F R L+ G GNFG++D D AA RYTE R+T Sbjct: 72 VGDVIGKYHPHGDQAVYDALVRMAQDFSMRERLVDGHGNFGSVDNDPPAAMRYTECRLTA 131 Query: 139 VA-ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197 A E +LQ +D + VDF Y+ EP+V P++ P LL NG+SGIAVGMAT+IP HN+ Sbjct: 132 FAQEALLQDIDANTVDFVGNYDGSQQEPLVLPARIPQLLLNGSSGIAVGMATNIPPHNLS 191 Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257 E+ + +ALI NP ++ +L+++I PDFPTG +I+ +E I E+Y GR +R Sbjct: 192 ELVDGLIALIHNPNLTSLELMQWIPAPDFPTGALIM-GQEGIREAYTTGRSSITLRGVAR 250 Query: 258 VEEV-GRGSW---CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313 VE + RG I++TE+PYQ K+ +IEKIAEL+ K++ + DIRDES V+ Sbjct: 251 VETIEQRGRPVRDAIIITELPYQTNKAAMIEKIAELVNEKKLEGIADIRDESDRSGMRVV 310 Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373 R P +++ +++ + ++ F +NM + G P+ + L L+ +L R EV+ Sbjct: 311 IELKRDAQPQVVLNNLYKQTPLQANFGVNMLAILNGE-PRTLTLRDALQAFLDFREEVIE 369 Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDA 430 RR+ + +Q + R +L+G L+A +D +IA+IR + + + + L+E Q D Sbjct: 370 RRTRYELQKAEERDHLLQGYLLALGQLDRVIALIRGAADTATAREELQAVLGLSEAQADG 429 Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490 IL ++LR L LE +I++E ++L+ + + +L ++ I+ E++++K F+ Sbjct: 430 ILQMQLRRLTALEAEKIQAEHEDLVRQIADLRDILARRERVMQIISEELQQLKARFASP- 488 Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL--------SA 542 RR+ C D +IE + ++ +G+I+ + + + Sbjct: 489 ----RRSRLC---LEDGELGTDDLIENRETVIFLTEQGYIKRMGLEEFQVQGRATRGKAG 541 Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQ 600 KE D+++ + D IL + G YTLPA + G G AI L+ + + Sbjct: 542 ARIKEDDAIEQFFACRSHDTILFFTNRGVVYTLPAHQIPQGSRAARGSAIVQLLPITREE 601 Query: 601 DIVTAFVYD--STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKL 652 + + S + LV+ ++G AN R + +S EE +L Sbjct: 602 RVTSMVPVSQFSDDEYLVMLTRGGYIKKTALSAFANVRS-NGLIAISLEENDEL 654 >gi|7107363|gb|AAF36389.1|AF221695_1 ParC [Yersinia pestis] Length = 386 Score = 379 bits (974), Expect = e-103, Method: Compositional matrix adjust. Identities = 186/389 (47%), Positives = 273/389 (70%), Gaps = 8/389 (2%) Query: 48 DGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQ 107 DG KPV RRI++AMSE+GL+ A FKKSAR VG+V+GK HPHGD + Y+++V +AQPF Sbjct: 3 DGLKPVQRRIVYAMSELGLNNSAKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSY 62 Query: 108 RYPLISGQGNFGNIDG-DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPV 166 RYPL+ GQGN+G D S AA RYTE+R+++ AE++L + + VD+ ++ EP Sbjct: 63 RYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKYAEVLLGELAQGTVDWVPNFDGTMQEPK 122 Query: 167 VFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDF 226 + P++ PN+L NGT+GIAVGMAT IP HNV+EI +A LALID P S+++LLE++ GPDF Sbjct: 123 MLPARLPNILLNGTTGIAVGMATDIPPHNVREIAQAVLALIDKPTTSLDELLEFVQGPDF 182 Query: 227 PTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKI 286 PT I+ R+ I + Y+ GRG R+RA W E+ GS V+T +P+QV ++++E+I Sbjct: 183 PTEAEIITPRDDIRKIYQNGRGSVRMRAVWKKED---GS--AVITALPHQVSGAKVLEQI 237 Query: 287 AELIIAKRIPLLEDIRDESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMN 344 A + AK++P++ED+RDES + R+V+ P+ +D D +M +F +D+E + +NMN Sbjct: 238 ANQMRAKKLPMVEDLRDESDHENPTRLVIVPRTNRVDLDQVMSHLFATTDLERSYRINMN 297 Query: 345 VLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEII 404 ++ + P V L IL EWL RR+ + R +FR++ + +R+ IL+GLLIA+LNIDE+I Sbjct: 298 MIGLDNRPSVKGLLEILTEWLVFRRQTVRNRLNFRLEKVLKRLHILEGLLIAFLNIDEVI 357 Query: 405 AIIRNEDKPKPVMVSRFSLTENQVDAILN 433 IIR ED PKP+++ RFS++E Q +A N Sbjct: 358 HIIRTEDDPKPLLMQRFSISETQAEASSN 386 >gi|110668557|ref|YP_658368.1| DNA gyrase / DNA topoisomerase II subunit A [Haloquadratum walsbyi DSM 16790] gi|109626304|emb|CAJ52762.1| DNA gyrase / DNA topoisomerase II subunit A [Haloquadratum walsbyi DSM 16790] Length = 856 Score = 379 bits (973), Expect = e-102, Method: Compositional matrix adjust. Identities = 224/627 (35%), Positives = 364/627 (58%), Gaps = 50/627 (7%) Query: 11 TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70 T + V+ + +E+ Y+ YA+S I RA+PD RDG KPVHRRI++AM + G+ + Sbjct: 13 TGIAAEVETARIEREMEQSYIDYAMSVIAGRALPDARDGLKPVHRRILYAMHQSGISARS 72 Query: 71 AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130 A +KS+ IVGE +G HPHGD ++Y++L R+AQ F R PL+ GQGNFG++DGD AA R Sbjct: 73 AHRKSSSIVGETMGDYHPHGDSAIYNALARMAQDFSMRNPLVDGQGNFGSVDGDPPAAMR 132 Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190 YTEARM+ +AE +L ++ D V+F Y++ SEP V P+ FPNLL NG+SGIAVGM+T+ Sbjct: 133 YTEARMSPIAEELLDNIEMDTVEFTANYDDRLSEPAVLPAAFPNLLVNGSSGIAVGMSTN 192 Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250 IP HN+ E+ +A + LI +PE ++E L+ ++ GPDFPTG IV + +I ++Y+ GRG Sbjct: 193 IPPHNLGEVIDATIHLIHHPECTVEDLMNHVQGPDFPTGANIV-GQNAIYKAYKTGRGRV 251 Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-V 309 RVRA + V++ IV+TE+P+Q K+RL+E+IA+ + A I + D+RDES D + Sbjct: 252 RVRAEFDVQD-----DRIVITELPFQTNKARLVERIADNVNAGTIEGIRDLRDESDRDGI 306 Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369 R+V+ K R +PD++ + + +E+ F + +N+ + PQV+ L L E+L HRR Sbjct: 307 RVVVELK-RGANPDIVKNQL-LEHHLESTFGV-INLALVDGQPQVLTLKETLHEYLEHRR 363 Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVM--------- 417 V+ RRS + + R IL+G L A +D+++ IIRN D K + Sbjct: 364 TVVRRRSQYELDEKRDRAHILEGRLRALEQVDDVVDIIRNSTDRDNAKAALRGEHVVESD 423 Query: 418 -----VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQW 472 + F +E+Q + I+ ++L SL LE +I+ E +++ E++ ++LN+ + Sbjct: 424 ERGESLPTFDFSEDQANHIVAMQLGSLTSLESDEIEDEYESVQERIERLQTILNNPDELD 483 Query: 473 NQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS 532 + E+ +++ ++ RRT E D + +I +E + VV++ +I+ Sbjct: 484 AVVEDELATIRDKYADE-----RRTRIIE---DDGTVTHEDLIAQEDVVVVVTEDDYIKR 535 Query: 533 LKSHSVDLSALH----------FKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL-- 580 + D + H K+GD++ A+T D +L ++ G+ Y L + Sbjct: 536 MSLE--DFRSQHRGGKGIIGTSLKDGDTVSSVYVANTHDYLLYFTSHGQVYQLKTYQIPE 593 Query: 581 LSGRGHGEAIQLLIDLNHNQDIVTAFV 607 +S G++ L++L+ + I TA V Sbjct: 594 MSRTARGKSAVNLLELDDGEQI-TAVV 619 >gi|320008113|gb|ADW02963.1| DNA topoisomerase (ATP-hydrolyzing) [Streptomyces flavogriseus ATCC 33331] Length = 816 Score = 379 bits (973), Expect = e-102, Method: Compositional matrix adjust. Identities = 210/523 (40%), Positives = 322/523 (61%), Gaps = 15/523 (2%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 EE + + + ++ +L YA S I RA+PD RDG KPVHRRI+ M+EMGL + Sbjct: 15 EEKILDIDVVDEMQGSFLEYAYSVIYSRALPDARDGMKPVHRRIVSQMNEMGLRPDRGYV 74 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYT 132 K AR+VGEV+GKLHPHGD S+YD+LVR+AQPF R PL+ G GNFG++ + D AA RYT Sbjct: 75 KCARVVGEVMGKLHPHGDASIYDALVRMAQPFSMRLPLVDGHGNFGSLGNDDPPAAMRYT 134 Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192 E RM L+ + +DED VDF+ Y+ ++ EPVV P+ +PNLL NG SGIAVGMAT++P Sbjct: 135 ECRMADATSLMTESIDEDTVDFQSNYDGQEQEPVVLPAAYPNLLVNGASGIAVGMATNMP 194 Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252 HN+ E+ AA LI +P +E L+ ++ GPD PTGG IV I ++Y GRG F++ Sbjct: 195 PHNLGEVIAAARHLIRHPGADLETLMRFVPGPDLPTGGRIV-GLGGIKDAYAAGRGTFKI 253 Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD--ESAEDVR 310 RA +E V +VVTE+P+ V ++I KI +L+ +K++ + D++D + A +R Sbjct: 254 RATVAIENVTARRKGLVVTELPFTVGPEKVIAKIKDLVGSKKLQGIADVKDLTDRAHGLR 313 Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370 +V+ KN P+ ++E ++ L+ ME F +N L G+ P + L +L+ +L HR + Sbjct: 314 LVIEVKN-GFVPEAVLEQLYKLTPMEESFGINNVALVDGQ-PLTLGLKELLEVYLDHRFD 371 Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQ 427 V+ RRS FR R+ +++GLL+A L+IDE+I +IR+ D + K ++ RFSL+E Q Sbjct: 372 VVRRRSEFRRTKRRNRLHLVEGLLVALLDIDEVIRLIRDSDNSAQAKERLMERFSLSEIQ 431 Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487 IL+ LR L + + ++++E D L E ++ ++L S + ++ E+ V + F Sbjct: 432 TQYILDTPLRRLTRFDRIELETERDKLSQEIAELTAILESDAELRKLVSSELAAVAKKF- 490 Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI 530 TD RRT E + + A++ + +P V++S+ G + Sbjct: 491 -GTD---RRTVLLESAGSQVASVPLE-VADDPCQVLLSSTGLL 528 >gi|73916124|gb|AAZ92930.1| DNA gyrase subunit A [Streptococcus pneumoniae] Length = 779 Score = 379 bits (973), Expect = e-102, Method: Compositional matrix adjust. Identities = 239/665 (35%), Positives = 385/665 (57%), Gaps = 38/665 (5%) Query: 55 RRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISG 114 RRI++ M+E+G+ KKSARI G+V+GK HPHGD S+Y+++VR+AQ + RY L+ G Sbjct: 1 RRILYGMNELGVTPDKPHKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDG 60 Query: 115 QGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPN 174 GNFG++DGDSAAA RYTEARM+++A +L+ ++++ VDF D Y+ + EP+V P++FPN Sbjct: 61 HGNFGSMDGDSAAAQRYTEARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPN 120 Query: 175 LLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVE 234 LL NG +GIAVGMAT+IP HN+ E +A ++DNPE++ + L+E + GPDFPTG +++ Sbjct: 121 LLVNGATGIAVGMATNIPPHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVM- 179 Query: 235 SRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR 294 + I ++Y G+G +R+R +E G IVVTE PY V K+++ E I L+ KR Sbjct: 180 GKSGIHKAYETGKGSIVLRSRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKR 239 Query: 295 IPLLEDIRDESA-EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQ 353 I + +RDES E VR V+ K R ++++ ++F ++ M+T F NM + G +P+ Sbjct: 240 IEGITAVRDESNREGVRFVIEVK-RDASANVILNNLFKMTQMQTNFGFNMLAIQNG-IPK 297 Query: 354 VMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NE 410 ++ L IL ++ H++EV+ RR+ F + + R IL+GLLIA +IDE+I IIR + Sbjct: 298 ILSLRQILDAYIEHQKEVVVRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETD 357 Query: 411 DKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQ 470 + + ++S+F L+E Q AIL++RLR L LE +I+SE D+LLA + +L ++ Sbjct: 358 AEAQAELMSKFKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADILAKPER 417 Query: 471 QWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGW 529 I E+ EVK FS +RRT E+ +L+ + +IE+ + + +SNRG+ Sbjct: 418 VSQIIKDELDEVKRKFSD-----KRRT---ELMVGQILSLEDEDLIEESDVLITLSNRGY 469 Query: 530 IRSL--------KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL 581 I+ L K + K+ D ++ + T D +L + G+ Y L + Sbjct: 470 IKRLDQDEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIP 529 Query: 582 S-GR-GHGEAIQLLIDLNHNQDIVTAFVYDS----TCKLLVVSSKGNAFIVEESEI--IA 633 GR G + L+ L+ ++ I T +S L + G IV+ + + A Sbjct: 530 EYGRTAKGLPVVNLLKLDEDESIQTVINVESDRSDDAYLFFTTRHG---IVKRTSVKEFA 586 Query: 634 NTRK-GKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSR-GKGVRLQ 690 N R+ G L + E+++ V+ GD ++G + F+ + MSR GV+ Sbjct: 587 NIRQNGLKALNLKDEDELINVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMSRIATGVKGV 646 Query: 691 SYKDG 695 + ++G Sbjct: 647 NLREG 651 >gi|157060392|gb|ABV03202.1| GyrA [Chlamydia trachomatis] gi|157060394|gb|ABV03203.1| GyrA [Chlamydia trachomatis] Length = 485 Score = 379 bits (972), Expect = e-102, Method: Compositional matrix adjust. Identities = 207/477 (43%), Positives = 299/477 (62%), Gaps = 18/477 (3%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 EE + +L ++E YL Y++S I RA+PD RDG KP RRI++AM ++ L G + Sbjct: 5 EEIIVPKNLEEEMKESYLRYSMSVIISRALPDARDGLKPSQRRILYAMKQLNLTPGVKHR 64 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 K A+I G+ G HPHG++ +Y +LVR+AQ + RYPL+ GQGNFG+IDGD AAA RYTE Sbjct: 65 KCAKICGDTSGDYHPHGERVIYPTLVRMAQDWAMRYPLVDGQGNFGSIDGDPAAAMRYTE 124 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 AR+T A +L+ +D+D VD Y+E EPVVFPSKFPNLL NG+SGIAVGMAT+IP Sbjct: 125 ARLTHSAIFLLEDLDKDTVDMVPNYDETKYEPVVFPSKFPNLLCNGSSGIAVGMATNIPP 184 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E+ EA L ++ N + SIE +LE + GPDFPTGGII + E I +Y GRG R+R Sbjct: 185 HNLGELIEATLLVLANSQTSIEDILEVMPGPDFPTGGIICGT-EGIRSTYYTGRGKLRLR 243 Query: 254 ARWCVEE-VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRI 311 AR VEE + I++TE+PY V KSRLIE+IAELI K + + D+RDES +D +R+ Sbjct: 244 ARMHVEENSDKQRENIILTEMPYNVNKSRLIEQIAELINEKTLTGISDVRDESDKDGIRV 303 Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371 VL K + ++++ ++ +D++ F NM L +P+ M + ++ W+ HR +V Sbjct: 304 VLELK-KGESSEVVINRLYKFTDVQVTFGANMLALDKN-LPRTMNIHRMISAWIRHRMDV 361 Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQV 428 + RR+ + + + R IL+G L A +DE++ IR N++ K +V FS +E Q Sbjct: 362 IQRRTRYELNKAEARAHILEGFLKALSCMDEVVKTIRESSNKEHAKQQLVELFSFSEAQA 421 Query: 429 DAILNLRLRSLRKLEEYQIKSELDNL----------LAEKEKIDSLLNSGKQQWNQI 475 AIL LRL L LE +++ E L LAE+E + ++ Q+ +++ Sbjct: 422 LAILELRLYQLTGLEADKVQKEYSELLEKITYYRKVLAEEELVKDIIREELQELHKV 478 >gi|229586449|ref|YP_002844950.1| DNA gyrase subunit A [Rickettsia africae ESF-5] gi|228021499|gb|ACP53207.1| DNA gyrase subunit A [Rickettsia africae ESF-5] Length = 905 Score = 379 bits (972), Expect = e-102, Method: Compositional matrix adjust. Identities = 246/712 (34%), Positives = 389/712 (54%), Gaps = 63/712 (8%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 N+ V++ ++ YL YA+S I RAIPD+RDG KPVHRRII++M E G ++KS Sbjct: 8 NLVPVNIEDEMKVSYLDYAMSVIVSRAIPDVRDGLKPVHRRIIYSMHEAGNHASKPYRKS 67 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 ARIVG+V+GK HPHGD ++YD+LVR+AQ F R PL+ GQGNFG++DGD+AAA RYTE+R Sbjct: 68 ARIVGDVMGKYHPHGDSAIYDALVRMAQDFSLRLPLVDGQGNFGSMDGDAAAAMRYTESR 127 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 M +V+ +++ +D++ V F Y+ + EP V P+ FPNLL NG+ GIAVGMAT+IP HN Sbjct: 128 MAKVSYKLVEDIDKETVSFNPNYDGSEEEPSVLPAMFPNLLVNGSGGIAVGMATNIPPHN 187 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 + E+ +A IDN +I I LLE + GPDFPTG +I+ I +Y GRG +R R Sbjct: 188 LGEVIDACCLYIDNNDIEILDLLEVVKGPDFPTGSMIL-GISGIRSAYLTGRGSIIMRGR 246 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314 +E + I++TEIPY V K+RL+EKIAE++ KRI + D+RDES ++ VRI + Sbjct: 247 AEIENIDNSRQAIIITEIPYMVNKARLVEKIAEMVKEKRIEGISDLRDESNKNGVRIFIE 306 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K + + ++++ I+ + ++T F + M L G +P+VM L ++ +++ R V+ Sbjct: 307 LK-KDVVAEVVLNQIYACTQLQTSFGVIMLALKDG-LPKVMNLKEVIAAFVSFREVVITN 364 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----------- 420 R+ + + R IL GL IA NIDEII II+ + P K +++R Sbjct: 365 RTIYLLNKARDRAHILLGLTIAVSNIDEIIRIIKASNDPNAAKQELMARQWEALNILPLV 424 Query: 421 --------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466 + TE Q AIL +RL+ L +E+ +++ +L NL+ E + ++L Sbjct: 425 KLVDDKAMLNEQGKCNFTEVQAKAILEMRLQRLTAMEKNKLEEDLKNLITEITEYLNILG 484 Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526 S + + E+ +VKE F+ R T E D+ + +I++E + V ++ Sbjct: 485 SRTRLLEILKEELIKVKEEFATP------RLTSIEFGEFDQDI--EDLIQREEMVVTVTL 536 Query: 527 RGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAG 578 G+I R+ K S L ++ D T +L S G+ Y+L Sbjct: 537 GGYIKRVPLSSYRAQKRGGKGRSGLSMRDEDITTQVFVGSTHTPMLFFSNIGQVYSLKLY 596 Query: 579 NL-LSG-RGHGEAIQLLIDLNHNQDIVTAFVYD------STCKLLVVSSKGNAFIVEESE 630 L LS +G G + ++ L N+ I ++ ++KGN + S+ Sbjct: 597 KLPLSNPQGKGRPMVNILPLKANEHITNIMPLPENQDERDNLNIMFATAKGN---IRRSD 653 Query: 631 IIANTR---KGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQI 678 ++ T+ GK +++ ++K+ V D H+ + + K L F ++ + Sbjct: 654 LLDFTKLQSNGKIAIRLDEDDKLIDVKPCKEDEHILLATKAGKALRFPVESL 705 >gi|294340564|emb|CAZ88949.1| DNA gyrase subunit A [Thiomonas sp. 3As] Length = 868 Score = 379 bits (972), Expect = e-102, Method: Compositional matrix adjust. Identities = 230/657 (35%), Positives = 368/657 (56%), Gaps = 65/657 (9%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 +SL + YL YA+S I RA+PD+RDG KPVHRR+++AM E+ + +KKSARIV Sbjct: 11 ISLETEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELSNAWNRPYKKSARIV 70 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGDQSVYD++VR+AQ F RY L+ GQGNFG++DGD+AAA RYTE R++++ Sbjct: 71 GDVIGKYHPHGDQSVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRLSKI 130 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A +L +D++ VDF Y+ + EP++ P++ PNLL NG+SGIAVGMAT+IP HN+ E+ Sbjct: 131 AHEMLADIDKETVDFGPNYDGSEQEPLLLPARLPNLLINGSSGIAVGMATNIPPHNLGEV 190 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 +A L L+ NP +IE+L+E + PDFPT GII + + ++YR GRG +RAR E Sbjct: 191 LDACLHLLRNPGATIEELMERVPAPDFPTAGIIYGT-SGVRDAYRTGRGRVVMRARCHFE 249 Query: 260 EVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318 ++ +G I+V E+PYQV K L+E+IAEL+ K+I + I+DES + V+ R Sbjct: 250 DLEKGQRQAIIVDELPYQVNKRTLLERIAELVQEKKIEGISHIQDESDKSGMRVVIELKR 309 Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378 P++++ +++ + ++ F +NM L G+ P+++ L ++ +L+HRRE++ RR+ F Sbjct: 310 GEVPEVVLNNLYKQTQLQDTFGVNMVALVDGQ-PRLLNLQQMIAAFLSHRREIITRRTVF 368 Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV-----------------MVSR- 420 ++ R +L+GL +A N+D +I +I+ P PV M+SR Sbjct: 369 DLRKARERGHVLEGLAVALANVDRMIELIKAAPTP-PVAKERLLAQAWEPGEARAMLSRV 427 Query: 421 ----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458 + L+E Q IL +RL+ L LE+ +I E +++ + Sbjct: 428 EGDITQFQPDDLDARYGLKPDGYYLSETQAQEILQMRLQRLTGLEQDKIVGEYKDVMEQI 487 Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518 + +L ++ I E+ ++ F G R + EV+ D + +I + Sbjct: 488 ADLLDILAKPERMTEIITTEMSALRAEF------GDARRSHIEVNAYDIDV--EDLITPQ 539 Query: 519 PITVVISNRGWIRS--LKSHSVDLS------ALHFKEGDSLKIALHAHTTDRILLLSTDG 570 + V IS+ G+++S L + A KE D ++ A+T D +L S G Sbjct: 540 DLVVTISHSGYVKSQPLAEYRAQRRGGRGKLATGTKEDDWVEQLFVANTHDMLLCFSNRG 599 Query: 571 KAYTLPA-GNLLSGRG-HGEAIQLLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGN 622 + Y + + + GRG G+ + L L + I T +D + + +++G Sbjct: 600 RVYWMKVYESPMGGRGSRGKPLVNLFPLQAGEKITTVLPVKAFDEQHYVFMATARGT 656 >gi|257437728|ref|ZP_05613483.1| DNA gyrase, A subunit [Faecalibacterium prausnitzii A2-165] gi|257200035|gb|EEU98319.1| DNA gyrase, A subunit [Faecalibacterium prausnitzii A2-165] Length = 854 Score = 379 bits (972), Expect = e-102, Method: Compositional matrix adjust. Identities = 241/705 (34%), Positives = 378/705 (53%), Gaps = 39/705 (5%) Query: 26 LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85 +E +L Y++S I RA+PD+RDG KPVHRRI++ M E G D A++KSA VG V+G Sbjct: 24 IETAFLDYSMSVIVSRALPDVRDGLKPVHRRILYTMHERGNDPSHAYRKSADTVGAVLGS 83 Query: 86 LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145 HPHGD SVYD++VRLAQ F RYPL+ GQGNFG++DGD AAYRYTEARM+++A +L Sbjct: 84 YHPHGDASVYDAMVRLAQDFSLRYPLVDGQGNFGSVDGDPPAAYRYTEARMSRMAVEMLT 143 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 +D+D +D+ ++E EP V P +FPNLL NG+ GIAVGMAT+IP HN+ E+ + +A Sbjct: 144 DIDKDTIDWDPNFDETKKEPSVLPCRFPNLLVNGSQGIAVGMATNIPPHNLSEVIDGCVA 203 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265 I++P+I + L+E+I GPDFPT GII+ R I +Y GRG +R R +EE G Sbjct: 204 YIEDPDIDLPGLMEHIKGPDFPTAGIIM-GRSGIRAAYATGRGKITLRGRATIEEKKNGR 262 Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325 I+VTEIPY V K+RLIE IA+L+ KRI + D+ DE+ ++ + +P ++ Sbjct: 263 AQIIVTEIPYMVNKARLIENIADLVKEKRIEGISDLNDETNRKGMRIVIDVRKDANPQVV 322 Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385 + ++ + ++ + M + +VP+VM L ++++++ + EV+ RR+ + ++ Sbjct: 323 LNQLYQYTQLQDTVGVIMLAIDH-KVPKVMTLKQMIQKYVEFQDEVVRRRTQYDLKKARE 381 Query: 386 RVEILKGLLIAYLNIDEIIAIIR----NEDKPKPVMVSRFSLTENQVDAILNLRLRSLRK 441 R IL+GL A +DE+IA IR + K ++ +F + Q DAI+ L+L L Sbjct: 382 RAHILEGLKKATDIVDELIATIRACKGGMSEAKAAIMEQFGFDDPQADAIVKLQLGRLAG 441 Query: 442 LEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCE 501 LE +I+ EL +L A+ + +L + + E+ E+K F RRT E Sbjct: 442 LEILKIEEELGSLNAKIRDWEEILADDARVLEIVKSELLEMKRRFGDD-----RRT---E 493 Query: 502 VSRADKATLQQAMIEKEPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKI 553 + + +I +E ++ G+I+ + K +S + KE D ++ Sbjct: 494 IETVTGEVDIEDLIAEEQCVYTLTEAGYIKRQLKATYQAQKRGGRGISGMTRKEEDIVQE 553 Query: 554 ALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608 T D +L ++ G K YT+ G+ S G I L+ L + + Sbjct: 554 MFVGSTHDYVLFVTDKGRLFRIKGYTIAEGSRTS---KGTNIVNLLQLAEGEKVTNMLCQ 610 Query: 609 --DSTCKLLVVSSKGNAFIVEES--EIIANTRKGKTFLKVSSEEKMKLVVKVTGDH--VA 662 D+ + V+ +++ + E AN RK +E ++T H + Sbjct: 611 SKDTANEGGFVTMVTKQGLIKRTPLEQYANIRKSGLIGIALNEGDALAWTRLTSGHDMLI 670 Query: 663 VVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKIC 706 V N + + F+ + M R G GVR +G +V+ IC Sbjct: 671 VATRNGQAIRFNEEDARPMGRSGHGVRAIKLAEG--DEVVGVCIC 713 >gi|83280995|dbj|BAE53572.1| gyrase alpha subunit [Thermoplasma acidophilum] Length = 793 Score = 379 bits (972), Expect = e-102, Method: Compositional matrix adjust. Identities = 240/745 (32%), Positives = 408/745 (54%), Gaps = 40/745 (5%) Query: 26 LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85 + + YL YA+S I RAIPD+RDG KPV RR++++M E+G+ +KK ARIVGE +GK Sbjct: 10 IRKSYLEYAMSVIVSRAIPDVRDGLKPVQRRVLYSMRELGVTHDKPYKKCARIVGETMGK 69 Query: 86 LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145 HPHGD ++YD+LVR+AQ F RYPL+ GQGNFG+IDGDS AA RYTEAR+TQ+AE ++ Sbjct: 70 YHPHGDMAIYDALVRMAQDFSLRYPLVDGQGNFGSIDGDSPAAMRYTEARLTQIAEDMMD 129 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 +DE+ V FR ++ SEP PSK PNLL NG+SGIAVGMAT++ HN+ EIC+A L Sbjct: 130 DIDENTVPFRLNFDGTLSEPEYLPSKIPNLLINGSSGIAVGMATNMVPHNLTEICDAILY 189 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265 +D+ + ++ LL+Y+ GPDFP GGI+ ++ ++E+YR GRG V+ E R Sbjct: 190 EVDHRDSPVDDLLKYVKGPDFPGGGIVFYGKD-LIEAYRTGRGKVIVQGEVDATEDRR-- 246 Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKNRSLDPDL 324 +++ IPY V K+ L++ IA+L + I + DI+DES + + IV+ ++ + P L Sbjct: 247 --LIIKSIPYGVNKADLVQSIADLAKNEVIKDITDIKDESDRNGISIVIKVRDDDIKP-L 303 Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384 ++ ++ + +E+ + +N++ +G P++M L ++ ++ HR +V+ RRS FR++ Sbjct: 304 VLNQLYEHTALESSIGI-INLVLVGNQPKLMNLKDLIDSFIDHRLDVILRRSQFRLERKK 362 Query: 385 RRVEILKGLLIAYLNIDEIIAII---RNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRK 441 R+++L G+L A +ID ++ I+ ++ D+ + + F L + Q+ AIL +RL+ L Sbjct: 363 ERLDVLTGILTAVEHIDRVVEILKSSKDADEASSKLRNEFDLNDRQIKAILEMRLQRLVN 422 Query: 442 LEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCE 501 E+ ++SE+ L E + ++ ++ S ++ ++ EI E+++ K D R R F Sbjct: 423 TEQASVRSEIAQLQTEIKDLEEIILSEDRRIDEFKKEITEIQK---KYGDKRRSRIKF-- 477 Query: 502 VSRADKATLQQAMIEKEPITVVISNRGWIRSLKS----------HSVDLSALHFKEGDSL 551 R + +I E +++S G ++ +++ V+ S K DS+ Sbjct: 478 --RGITERTMEDLIPNEESLIMLSYGGLVKRVQADEYRSQRRGGKGVNTS---MKTSDSI 532 Query: 552 KIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF 606 K +H + D + + G KAY +P + S A L +I+ A Sbjct: 533 KSMIHCFSHDTVYYFTNTGRVFKSKAYEIPKKSRTSLGVSAAAFLKLAQGERVTEIMKA- 591 Query: 607 VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAVVG 665 + L++V+ G+ + + G + + ++++ V GD ++ V+ Sbjct: 592 PPEKGYYLILVTRDGSVKKTAADPVFDSKSSGLKIITLEDDDELVSVSYTAGDKNIFVLS 651 Query: 666 ENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSEN 724 K +F+ +I E R GVR +G + + F + + + + Y + N Sbjct: 652 SKGKASVFNTSEIRETGRTSMGVRSMRLNEGD-TILTAFVVNSDEDILSISEKGYGKRTN 710 Query: 725 DLLGWLGKRGGVGSLVPKGFPRSGK 749 + RG G +V + R+G+ Sbjct: 711 ISEFPIHHRGSSGVMVYRDTERTGR 735 Score = 40.8 bits (94), Expect = 0.93, Method: Compositional matrix adjust. Identities = 54/219 (24%), Positives = 89/219 (40%), Gaps = 14/219 (6%) Query: 484 EIFSKS-TDLGRRRTTFCEVSRADKAT-LQQAMIEKEPITVVISNRGWIRS------LKS 535 EI KS T LG F ++++ ++ T + +A EK ++++ G ++ S Sbjct: 560 EIPKKSRTSLGVSAAAFLKLAQGERVTEIMKAPPEKGYYLILVTRDGSVKKTAADPVFDS 619 Query: 536 HSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLID 595 S L + ++ D L + I +LS+ GKA + ++ + Sbjct: 620 KSSGLKIITLEDDDELVSVSYTAGDKNIFVLSSKGKASVFNTSEIRETGRTSMGVRSM-R 678 Query: 596 LNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVK 655 LN I+TAFV +S +L +S KG SE + R + E+ V Sbjct: 679 LNEGDTILTAFVVNSDEDILSISEKGYGKRTNISEFPIHHRGSSGVMVYRDTERTGRVSH 738 Query: 656 VTG----DHVAVVGENRKLLIFSIDQIPEMSR-GKGVRL 689 D V +V N K + +IPE SR GV+L Sbjct: 739 AIPVRDEDEVILVSMNEKTIRIKASEIPETSRVTSGVKL 777 >gi|323144455|ref|ZP_08079058.1| DNA gyrase, A subunit [Succinatimonas hippei YIT 12066] gi|322415770|gb|EFY06501.1| DNA gyrase, A subunit [Succinatimonas hippei YIT 12066] Length = 983 Score = 379 bits (972), Expect = e-102, Method: Compositional matrix adjust. Identities = 242/686 (35%), Positives = 371/686 (54%), Gaps = 82/686 (11%) Query: 4 DNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63 D I ++ V NV V L L++ ++ YA+S I +RA+PD+RDG KPVHRR+++ M + Sbjct: 41 DGIDTASQSVSANVATVKLEDELKKSFIDYAMSVIVDRALPDVRDGLKPVHRRVLYDMYD 100 Query: 64 MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123 + + KKSAR+VG+VIG+ HPHGD +VY+++VR+AQ F R PLI GQGNFGNIDG Sbjct: 101 LKIWHNGQTKKSARVVGDVIGRFHPHGDAAVYETIVRMAQWFSMRAPLIFGQGNFGNIDG 160 Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183 D AA RYTE RMT++AE++LQ +D++ VD Y+ + P V P++FPNLL NG+SGI Sbjct: 161 DGPAAMRYTEVRMTKIAEMMLQDIDKETVDTYPNYDGNEQIPEVLPTRFPNLLVNGSSGI 220 Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243 AVGMAT+IP HN+ E+ + +AL+DNP++ ++ L+ YI GPDFPTGG IV I E+Y Sbjct: 221 AVGMATNIPPHNLGEVIDGTVALLDNPDLGLDDLMRYIPGPDFPTGGFIV-GNAGIREAY 279 Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303 R GRG +RAR +EE G I V EIPY V KS ++++IAEL+ K+I + ++ D Sbjct: 280 RTGRGRCIMRARTHIEEDKSGRKTIYVDEIPYVVNKSAIVKQIAELVRDKKIEGISEVND 339 Query: 304 ESAED--VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361 S +D VRI + K R + ++ ++F + +++ FP+NM L P+ +PL IL Sbjct: 340 LSDKDNQVRIAIDLK-RDAYEEAVLNNLFERTSLQSSFPINMIALVHNH-PRQLPLKEIL 397 Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMV 418 E++ RREV+ RR+ + ++ R+ + +GL++A NI++I+ +I N D+ + ++ Sbjct: 398 SEFINFRREVVTRRTVYLLRQDRRKAFLDEGLIVAKANINKIVDMITDSANADEARRRLM 457 Query: 419 ------------------------------------SRFSLTENQVDAILNLRLRSLRKL 442 ++ L+E Q AIL L+L+ L L Sbjct: 458 EEPWDGTLISSLIERTEEGFNICLPSGIDPKAGLHDDKYYLSEEQARAILALQLQRLTHL 517 Query: 443 EEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEV 502 +I+++ L+ + +LN+ + I E+ EVKE F+ +RR+ F E Sbjct: 518 AGDEIQADYKALIENIKGYLEILNNPVRMNEVIRGELIEVKEAFAD-----KRRSDFTE- 571 Query: 503 SRADKATLQQA-MIEKEPITVVISNRGWIRSLKSHSVDL--------SALHFKEGDSLKI 553 D L +A I + + V +S G+I+ + + A K+ D + Sbjct: 572 ---DYGKLSKADFIAPQDVIVTLSQEGYIKYQDISTYEAQQRGGKGRQAAKLKDDDFISR 628 Query: 554 ALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRG----------HGEAIQLLI---- 594 +T D ++ + G K + LP + RG GE I L+ Sbjct: 629 MAVTNTHDTLMCFTDKGRVFASKVFDLPTSENRTWRGRPIQNIFKIEEGEKITALLPVSE 688 Query: 595 -DLNHNQDIVTAFVYDSTCKLLVVSS 619 D NH + T Y KL S Sbjct: 689 FDENHFIIMATVMGYIKKVKLSAFKS 714 >gi|312137524|ref|YP_004004860.1| DNA gyrase subunit a [Rhodococcus equi 103S] gi|325677511|ref|ZP_08157175.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Rhodococcus equi ATCC 33707] gi|111185876|dbj|BAF02675.1| DNA gyrase subunit A [Rhodococcus equi] gi|311886863|emb|CBH46171.1| DNA gyrase subunit A [Rhodococcus equi 103S] gi|325551758|gb|EGD21456.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Rhodococcus equi ATCC 33707] Length = 839 Score = 379 bits (972), Expect = e-102, Method: Compositional matrix adjust. Identities = 230/630 (36%), Positives = 354/630 (56%), Gaps = 35/630 (5%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 + ++ V ++ ++ Y+ YA+S I RA+PD+RDG KPVHRR+++AM + G + K Sbjct: 14 DRIEPVDIQQEMQSSYIDYAMSVIVGRALPDVRDGLKPVHRRVLYAMYDNGYRPDRGYVK 73 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 SAR V + +G HPHGD S+YD+LVR+AQP+ RYPL+ GQGNFG+ D AAA RYTE Sbjct: 74 SARPVADTMGNYHPHGDSSIYDTLVRMAQPWSLRYPLVDGQGNFGSRGNDGAAAMRYTEC 133 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 RMT +A +++ +D D VDF Y+ + EP V PS+ PNLL NG+ GIAVGMAT+IP H Sbjct: 134 RMTPLAMEMVREIDHDTVDFVPNYDGKTQEPTVLPSRIPNLLVNGSGGIAVGMATNIPPH 193 Query: 195 NVQEICEAALALIDN----PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250 N++E+ EA +DN E ++E ++E + GPDFPT G+IV + I ++YR GRG Sbjct: 194 NLREVAEAIYWALDNHEADEEATLEAVMERVKGPDFPTSGLIVGG-QGIQDAYRTGRGSI 252 Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV- 309 R+R +EE RGS IV+TE+PYQV LI IAE + +I + I D+S++ V Sbjct: 253 RMRGVVEIEESDRGSTQIVITELPYQVNPDNLITSIAEQVRDGKIAGISKIEDQSSDRVG 312 Query: 310 -RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368 RIV+ K ++ +++ +++ S ++T F NM + G VP+ + LD +++ ++AH+ Sbjct: 313 MRIVVVIKRDAV-AKVVLNNLYKHSQLQTSFGANMLSIVDG-VPRTLRLDQMIRYYVAHQ 370 Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTE 425 EV+ RR+ + ++ + R IL+GL+ A +DE+IA+IR+ D + ++ ++ E Sbjct: 371 LEVIIRRTRYLLRKAEERAHILRGLVKALDALDEVIALIRSSQTVDVARTGLMDLLTVDE 430 Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485 Q DAIL ++LR L LE +I EL + E + +L ++Q + E+ E+ E Sbjct: 431 IQADAILAMQLRRLAALERQKIIDELAEIEREIADLKDILEKPERQRQIVKDELSEIVEK 490 Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHS 537 + RRT AD + +I +E + V I+ G+ RS K Sbjct: 491 YGDD-----RRTRIIA---ADGDVTDEDLIAREDVVVTITETGYAKRTRTDLYRSQKRGG 542 Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQL 592 + K+ D +K T D +L +T G KAY LP N + RG A L Sbjct: 543 KGVKGAELKQEDIVKNFFVCSTHDWLLFFTTKGRVYRAKAYELPEAN-RTARGQHVANLL 601 Query: 593 LIDLNHN-QDIVTAFVYDSTCKLLVVSSKG 621 + Q I+ Y+ L++ + G Sbjct: 602 AFQPDEKIQSIIHIKSYEDAPYLVLATRNG 631 >gi|302557971|ref|ZP_07310313.1| DNA gyrase, A subunit [Streptomyces griseoflavus Tu4000] gi|302475589|gb|EFL38682.1| DNA gyrase, A subunit [Streptomyces griseoflavus Tu4000] Length = 818 Score = 379 bits (972), Expect = e-102, Method: Compositional matrix adjust. Identities = 210/523 (40%), Positives = 319/523 (60%), Gaps = 15/523 (2%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 EE + + + ++ +L YA S I RA+PD RDG KPVHRRI++ M+EMGL + Sbjct: 16 EEKILDIDVVDEMQGSFLEYAYSVIYSRALPDARDGMKPVHRRIVYQMNEMGLRPDRGYV 75 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYT 132 K AR+VGEV+GKLHPHGD S+YD+LVR+AQPF R PL+ G GNFG++ + D AA RYT Sbjct: 76 KCARVVGEVMGKLHPHGDASIYDALVRMAQPFSMRVPLVDGHGNFGSLGNDDPPAAMRYT 135 Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192 E+RMT+ L+ + +DED VDF Y+ ++ EPV P+ FPNLL NG SGIAVGMAT++P Sbjct: 136 ESRMTEATSLMTESIDEDTVDFAPNYDGQEREPVTLPAAFPNLLVNGASGIAVGMATNMP 195 Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252 HN++E+ AA LI P ++ L++++ GPD PTGG IV I ++Y GRG F++ Sbjct: 196 PHNLREVVAAARHLIRYPNADLDALMKHVPGPDLPTGGRIV-GLPGIRDAYETGRGSFKI 254 Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD--ESAEDVR 310 RA VE+V +VVTE+P+ V ++I KI +L+ +K++ + D++D + A +R Sbjct: 255 RATVTVEDVTARRKGLVVTELPFTVGPEKVIGKIKDLVGSKKLQGIADVKDLTDRAHGLR 314 Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370 +V+ KN P+ ++E ++ L+ ME F +N L G+ P + L +L+ +L HR Sbjct: 315 LVIEIKN-GFVPEAVLEQLYKLTPMEESFGINNVALVDGQ-PLTLGLKELLEVYLDHRFN 372 Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQ 427 V+ RRS FR R+ +++GLL A ++IDE+I +IR N + K ++ RFSL++ Q Sbjct: 373 VVRRRSEFRRGKRRDRLHLVEGLLTALVDIDEVIRLIRSSENSAQAKQRLMERFSLSDIQ 432 Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487 IL+ LR L K + ++++E D L E E++ +L+S + ++ E+ V + F Sbjct: 433 TQYILDTPLRRLTKFDRIELEAEKDRLNEEIEELTRILDSDAELRKLVSAELAAVAKKFG 492 Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI 530 RRT E S A + + +P V++S G + Sbjct: 493 ND-----RRTLLLE-SAGTPAAVVPLQVADDPCRVLLSATGLL 529 >gi|76799493|ref|ZP_00781631.1| DNA topoisomerase IV, A subunit [Streptococcus agalactiae 18RS21] gi|76585154|gb|EAO61774.1| DNA topoisomerase IV, A subunit [Streptococcus agalactiae 18RS21] Length = 819 Score = 379 bits (972), Expect = e-102, Method: Compositional matrix adjust. Identities = 233/698 (33%), Positives = 397/698 (56%), Gaps = 28/698 (4%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 N++ +SL + ER+ Y+ I+ERA+PD+RDG KPV RRI+++M++ G F F+KS Sbjct: 3 NIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTFEKGFRKS 62 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 A+ VG V+G HPHGD S+YD++VR++Q + R LI GN G++DGD AAA RYTEAR Sbjct: 63 AKSVGNVMGNFHPHGDSSIYDAMVRMSQDWKNRETLIEMHGNNGSMDGDPAAAMRYTEAR 122 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 ++++A +LQ +D++ V F +++ + EP V P+ FPNLL NG +GI+ G AT IP HN Sbjct: 123 LSEIAGYLLQDIDKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPHN 182 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 + E+ +A + +ID+P+ ++KL+E++ GPDFPTG II + ++ I ++Y G+G VR+R Sbjct: 183 LAEVIDAVVYMIDHPKAKLDKLMEFLPGPDFPTGAII-QGKDEIRKAYETGKGRVAVRSR 241 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315 +E + G I+VTEIPY+V KS L+++I ++ + ++P + ++RDES D + Sbjct: 242 TAIETLKGGKKQIIVTEIPYEVNKSVLVKRIDDVRVNNKVPGIAEVRDESDRDGLRIAIE 301 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 + D +++ +F +D++ + NM + P+ + L IL ++AHRRE++ R Sbjct: 302 LKKEADETIVLNYLFKYTDLQVNYNFNMVAID-DYTPKQVGLSRILTSYIAHRREIIIAR 360 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432 S F + ++R+ I++GL+ +DE+IA+IR N+ K + + +E Q +AI+ Sbjct: 361 SKFDKEKAEKRLHIVEGLIRVLSILDEVIALIRASENKADAKENLKVSYEFSEAQAEAIV 420 Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492 L+L L + ++ E + L + + ++++ + +N + E+REVK+ F+ + Sbjct: 421 TLQLYRLTNTDIVTLREEEEELRQQITMLKAIISDERTMYNVMKRELREVKKKFANT--- 477 Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI-----RSLKSHSVDLSALHFKE 547 RR+ E++ + +IE E V ++ G++ RS + +VD L +E Sbjct: 478 --RRSELQELAETIEIDTASLIIE-EDTYVSVTRGGYVKRTSPRSFNASTVD--ELGKRE 532 Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIVT 604 D L +A TT +L+ + G P L R GE + Q L++ N++I+ Sbjct: 533 DDELIFVSNAKTTQHLLMFTNLGNLAYRPVHELADIRWKDVGEHLSQNLVNFASNEEIIY 592 Query: 605 AFVYDSTCK--LLVVSSKGNAFIVEESEIIA-NTRKGKT--FLKVSS-EEKMKLVVKVTG 658 A + D K V+ G E EI T K KT + K+ + ++ + V + Sbjct: 593 AELVDDFTKETYFAVTRLGQIKRFERQEISPWRTYKSKTAKYAKLKNVDDYVVTVAPIQL 652 Query: 659 DHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDG 695 + V +V N L FSI+ +P + S+ GV+ + KD Sbjct: 653 EDVILVTYNGYALRFSINDVPVVGSKAAGVKAMNLKDS 690 >gi|296284145|ref|ZP_06862143.1| DNA gyrase subunit A [Citromicrobium bathyomarinum JL354] Length = 941 Score = 379 bits (972), Expect = e-102, Method: Compositional matrix adjust. Identities = 222/597 (37%), Positives = 331/597 (55%), Gaps = 50/597 (8%) Query: 26 LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85 ++ YL YA+S I RA+PD+RDG KPVHRRI+ A E G G ++KSA+IVG+V+G Sbjct: 26 MKTSYLDYAMSVIVSRALPDVRDGLKPVHRRILFASQEGGFVAGRPYRKSAKIVGDVMGN 85 Query: 86 LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145 HPHGD ++YD+L R+ Q + R PLI GQGNFG++D D A+ RYTEAR+ +VA +L Sbjct: 86 YHPHGDSAIYDALARMTQSWSMRVPLIDGQGNFGSMDPDPPASMRYTEARLEKVANALLD 145 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 +D+D VDF + Y+ EP V P+ FPNLL NG GIAVGMAT+IP HN+ E+ + LA Sbjct: 146 DLDKDTVDFAENYDGSREEPTVLPAGFPNLLVNGAGGIAVGMATNIPPHNLGEVIDGCLA 205 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265 I NP I+ E+L+EYI GPDFPT +I+ + +Y GRG +RAR VE Sbjct: 206 FIANPAITSEELIEYIPGPDFPTAPLIL-GQSGARSAYLTGRGSIMMRARHEVETGRNDR 264 Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLFPKNRSLDPDL 324 IV+T IPYQV K+ L+EKIAE KRI + DIRDES+ E VR+V+ K R P++ Sbjct: 265 QSIVLTSIPYQVGKNMLVEKIAEAAKDKRIEGISDIRDESSREGVRVVVDLK-RDASPEV 323 Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384 ++ ++ S + FP NM + GR P+V+ L I++ +++ R +V+ RR+ F + Sbjct: 324 VLNQLWRYSPAQASFPANMLAIRGGR-PEVLALRDIIQAFISFREQVITRRTKFELNKAR 382 Query: 385 RRVEILKGLLIAYLNIDEIIAIIRNEDKPK-----------PV----------------- 416 R IL GL++A N+DE++AIIR P P+ Sbjct: 383 DRAHILLGLVVAVSNMDEVVAIIRGAANPAEARGKLLRKEWPIGDIAQYIALVEAIEPSS 442 Query: 417 --MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQ 474 + L+E QV AIL+LRL L L +I EL L + E S+L ++ + Sbjct: 443 DEHGGTYRLSERQVKAILDLRLHRLTALGRDEIGDELKELATKIEYYLSILADRRKLYQV 502 Query: 475 IACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK 534 + E++ +++ ++ E++ A + +IE+E + V +++ G+I+ Sbjct: 503 MREELQAIRDQYATP--------RMSEIAPAWDGVDDEDLIEQEDMVVTVTHGGYIKRTP 554 Query: 535 SHSVDL--------SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG 583 H+ S++ K+ D++ T + +L + G+ Y L L G Sbjct: 555 LHAFRAQARGGKGRSSMATKDEDAVVEMFVTSTHNPVLFFTNTGRVYRLKVWKLPEG 611 >gi|108759045|ref|YP_629032.1| DNA gyrase subunit A [Myxococcus xanthus DK 1622] gi|108462925|gb|ABF88110.1| DNA gyrase, A subunit [Myxococcus xanthus DK 1622] Length = 942 Score = 379 bits (972), Expect = e-102, Method: Compositional matrix adjust. Identities = 235/618 (38%), Positives = 355/618 (57%), Gaps = 73/618 (11%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 V++ + YL Y++S I RA+PD+RDG KPVHRR+++AM+++G A+KKSAR+V Sbjct: 27 VNIEDEMRRSYLDYSMSVIVGRALPDVRDGLKPVHRRVLYAMNDLGNLHNRAYKKSARVV 86 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGD SVYD++VRLAQ + RY L+ GQGNFG++DGDS AA RYTE RM ++ Sbjct: 87 GDVIGKYHPHGDSSVYDAMVRLAQEWSLRYLLVDGQGNFGSVDGDSPAAMRYTEVRMERL 146 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 AE +L +D++ VDF Y++ EP+V PSKFPNLL NG+SGIAVGM T+IP HN+ E+ Sbjct: 147 AEDLLADIDKETVDFGPNYDDSLEEPLVLPSKFPNLLVNGSSGIAVGMTTNIPPHNMTEV 206 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 L LIDNP ++ L+E+I GPDFPTG II RE IV +Y GRG +RAR +E Sbjct: 207 ISGTLHLIDNPGCTVRDLMEFITGPDFPTGAIIT-GREGIVRAYETGRGQVTIRARSDIE 265 Query: 260 EVGRGSW-CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFPKN 317 RG I+ +EIPYQV K+RLIEKIAEL+ K++ + DIRDES + +RIV+ K Sbjct: 266 TSKRGDREAIIFSEIPYQVNKARLIEKIAELVREKKLEGISDIRDESDRQGMRIVIELKR 325 Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377 ++ +++ +++ ++ +ET F M + G+ P+ + L +L ++AHRR+V+ RR+ Sbjct: 326 DAIS-QVVLNNLYAMTSLETTFGAVMLAIDGGQ-PRTLNLKEMLDRFIAHRRDVVTRRTR 383 Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIR----------------------------- 408 + ++ R+ I++GLL+A ID ++++IR Sbjct: 384 YELRKALARMHIVEGLLVAQDLIDLVVSLIRASKDPDEARWGLMNILSPSLYEHERFATL 443 Query: 409 ---NEDKPKPVM---VSR-----------------FSLTENQVDAILNLRLRSLRKLEEY 445 + DK K M VSR +E Q IL +RL+ L L+ Sbjct: 444 QRIDYDKAKAQMELLVSRARNEEPSYAGLAHKYEGAGFSEGQAQNILEMRLQRLTGLQRE 503 Query: 446 QIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRA 505 ++ EL L+ + ++ +L + + N I E+ E++E + +RRT E++ A Sbjct: 504 ELFRELIGLVRDIARLQDILANERSLLNVIKTELVEIRERYGD-----KRRT---EITGA 555 Query: 506 DKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHA 557 + +I +E + V +S+ G+I R+ K + KE D + A Sbjct: 556 VDEMTSEDLIAEETMVVTLSHTGYIKRSPLTEYRAQKRGGRGKTGAATKEDDFVSKLFVA 615 Query: 558 HTTDRILLLSTDGKAYTL 575 T ++ ++T GK Y+L Sbjct: 616 STHAYLMPITTKGKLYSL 633 >gi|103486652|ref|YP_616213.1| DNA gyrase subunit A [Sphingopyxis alaskensis RB2256] gi|98976729|gb|ABF52880.1| DNA gyrase subunit A [Sphingopyxis alaskensis RB2256] Length = 901 Score = 378 bits (971), Expect = e-102, Method: Compositional matrix adjust. Identities = 228/608 (37%), Positives = 336/608 (55%), Gaps = 49/608 (8%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 E+ V +++ ++ YL YA+S I RA+PD+RDG KPVHRRI++A E G G +K Sbjct: 5 EDGVSPINIVDEMKTSYLDYAMSVIVSRALPDVRDGLKPVHRRILYAAQEGGFIPGRPYK 64 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSA+IVG+V+G HPHGD ++YD+L R+ Q + R PLI GQGNFG++D D A+ RYTE Sbjct: 65 KSAKIVGDVMGNYHPHGDSAIYDALARMTQDWSLRVPLIDGQGNFGSMDPDPPASMRYTE 124 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 AR+ + A ++L +D+D VDF+ Y+ EP V P++FPNLL NG GIAVGMAT+IP Sbjct: 125 ARLAKTAMVLLNDLDKDTVDFQPNYDASREEPTVLPARFPNLLVNGAGGIAVGMATNIPP 184 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ EI +A LA+IDNP I++E+L+ + GPDFPTG +++ + +Y GRG +R Sbjct: 185 HNLGEIIDATLAMIDNPAITLEELMAIVPGPDFPTGAMML-GQGGARSAYATGRGSIMMR 243 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIV 312 + +EE IV+T IP+QV KS L+EKIAE KRI + DIRDES E VR+V Sbjct: 244 STHVIEEGRNDRQSIVLTSIPFQVGKSGLVEKIAEAARDKRIEGVADIRDESNREGVRVV 303 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 + K R ++++ ++ + ++ FP NM + GR P++M L IL ++ R EV+ Sbjct: 304 IELK-RDATAEVVLNQLWRHTPAQSSFPANMLAIRGGR-PEMMGLKDILSAFIIFREEVI 361 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK-----------PV----- 416 RR F + R IL GL++A N+DE++ IIR P P+ Sbjct: 362 TRRCKFELAKARDRAHILLGLVVAVSNLDEVVRIIRGSSSPAAAREALLAREWPIGDIAP 421 Query: 417 -------------MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDS 463 + + L+E QV AIL+LRL L L +I EL L AE E++ S Sbjct: 422 YIRLVEAIEGEMEEAATYRLSEVQVKAILDLRLHRLTALGRDEIGKELGELAAEIEELLS 481 Query: 464 LLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVV 523 +L + + + E+ V++ F+ RRT A + +IE+E + V Sbjct: 482 ILADRVKLYGVMREELVAVRDEFATP-----RRTLLAP---AADGIDDEDLIEREEMVVT 533 Query: 524 ISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575 ++ G+I R+ + + + K+ D + T +L ST GK Y + Sbjct: 534 VTMDGYIKRTPLATFRAQRRGGKGRAGMATKDEDVVTELFVTSTHTPVLFFSTAGKVYRM 593 Query: 576 PAGNLLSG 583 L G Sbjct: 594 KVWRLPEG 601 >gi|301300624|ref|ZP_07206814.1| DNA topoisomerase IV, A subunit [Lactobacillus salivarius ACS-116-V-Col5a] gi|300851778|gb|EFK79472.1| DNA topoisomerase IV, A subunit [Lactobacillus salivarius ACS-116-V-Col5a] Length = 798 Score = 378 bits (971), Expect = e-102, Method: Compositional matrix adjust. Identities = 241/735 (32%), Positives = 413/735 (56%), Gaps = 43/735 (5%) Query: 13 VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72 E ++ +SL + ER+ Y+ I+ERA+PD+RDG KPV RRI+ AM+E G + AF Sbjct: 3 TERKIQELSLEAVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILFAMNEDGNTYDKAF 62 Query: 73 KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132 +KSA+ VG V+G HPHGD S+Y+++VRL+Q + R PLI GN G++DGDS AA RYT Sbjct: 63 RKSAKSVGNVMGNFHPHGDTSIYEAMVRLSQSWKLREPLIEMHGNNGSMDGDSPAAMRYT 122 Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192 EAR++Q+A +LQ +D+ VD +++ + EP V P++FPNLL NG +GI+ G AT IP Sbjct: 123 EARLSQIASEMLQDIDKKTVDMVLNFDDTEYEPTVLPARFPNLLVNGATGISAGYATEIP 182 Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252 HN+ E EAA+ LI++P S++ L+++I GPDFPTGGI+ + + I ++Y GRG + Sbjct: 183 PHNLSETIEAAIYLINHPNASLDDLMQFIKGPDFPTGGIL-QGIDGIKKAYETGRGRAVL 241 Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRI 311 R++ +E++ I+VTEIPY+V KS L+++I EL I K++ + ++RDES E +R+ Sbjct: 242 RSKTKIEDIRGNKQQIIVTEIPYEVNKSALVKRIDELRILKKVEGISEVRDESDREGLRV 301 Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371 V+ K ++ + ++ +F +D++ + NM ++ R P+ + L IL+ +L H+REV Sbjct: 302 VIELK-KNANAQGILNYLFKNTDLQVSYNFNMVAINNKR-PEHVGLKTILEAYLEHQREV 359 Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQV 428 RR+ F ++ R I+KGL+ A +D++I IR N+ K +VS FS TE Q Sbjct: 360 TTRRTKFDLEKAKAREHIVKGLIKALSILDDVIKTIRASKNKSDAKKNLVSEFSFTEAQS 419 Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488 +AI++L+L L + ++ E + L +++L + K+ I E+ + + + Sbjct: 420 EAIVSLQLYRLTNTDVTALQKEAEELQKAIANFENILANPKELDKVIRKELNAINKKY-- 477 Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKS-HSVDLSALHF 545 G R T + + + M+ +E + +++S+ G+++ SL+S ++ D Sbjct: 478 ----GSERLTVIQDEISSLKIETEVMVAQEDVMLLVSHDGYVKRSSLRSFNASDNDENGL 533 Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIV 603 K+ D + +T + + + G P ++ R GE + + L +++ ++ Sbjct: 534 KDEDYPILQSVVNTLSHLFIFTNKGNLIYRPIHEVIESRWKDTGEHLSQTVGLENDEYVL 593 Query: 604 TAFVY---DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH 660 AFV+ D K L+ + +G V+ +A+ + G+T+ K + +KL V D Sbjct: 594 NAFVFENIDQDVKFLIATKEGYIKQVK----LADLKPGRTY-KTRASRYIKLKTDV--DE 646 Query: 661 VAVVG--ENRKLLIF-----------SIDQIPEM-SRGKGVRLQSYKDGGISDVICFKIC 706 V V E+ K +F S+D++P + GV+ +D +++VI Sbjct: 647 VISVSQVESDKSQVFCASYTGYGLRYSLDEVPTNGALAAGVKCMDLRDDTLANVILVSES 706 Query: 707 EGLTWIDSAGRSYNR 721 + ++ I G SY + Sbjct: 707 DEVSIITQRG-SYKK 720 >gi|284988640|ref|YP_003407194.1| DNA gyrase subunit A [Geodermatophilus obscurus DSM 43160] gi|284061885|gb|ADB72823.1| DNA gyrase, A subunit [Geodermatophilus obscurus DSM 43160] Length = 822 Score = 378 bits (971), Expect = e-102, Method: Compositional matrix adjust. Identities = 224/599 (37%), Positives = 343/599 (57%), Gaps = 31/599 (5%) Query: 9 SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68 + T + ++ V L+ ++ Y+ YA+S I RA+P++RDG KPVHRR+++AM + G Sbjct: 2 TETPARDRIEPVDLQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAMYDQGFRP 61 Query: 69 GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128 ++ K AR+VGEV+G HPHGD ++YD+LVRLAQP+ RYPLI GQGNFG+ D AAA Sbjct: 62 DRSYVKCARVVGEVMGNYHPHGDSAIYDALVRLAQPWSMRYPLIDGQGNFGSPGNDPAAA 121 Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188 RYTEAR+T +A +L +DE+ VDF+ Y+ ++ EP+V P + PNLL NG++GIAVGMA Sbjct: 122 MRYTEARLTPLAMEMLANIDEETVDFQPNYDGKNQEPLVLPGRIPNLLINGSAGIAVGMA 181 Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLL----EYIIGPDFPTGGIIVESRESIVESYR 244 T++P HN++E+ +A ++D+PE E+ L E + GPDFPT G+IV RE I E+YR Sbjct: 182 TNMPPHNLREVSDAVFWMLDHPEAEPEEALTACMERVKGPDFPTHGLIV-GREGIEEAYR 240 Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304 GRG R+RA VEE RG +VVTE+PYQV L E IAE + R+ + +I DE Sbjct: 241 TGRGSVRMRAVVTVEEDARGRVQLVVTELPYQVNPDNLAEAIAEAVRDGRLQGISEIADE 300 Query: 305 SAEDV-RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363 S++ V R ++ R +++ +++ + ++T F NM + G VP+ + LD +++ Sbjct: 301 SSDRVGRRLVITLRRDAVAKVVLNNLYKHTQLQTTFGCNMLSIVDG-VPRTLRLDELVRY 359 Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSR 420 ++ H+ EV+ RR+ +R++ + R IL+GL A +D +IA+IR+ ++ Sbjct: 360 YVLHQIEVIQRRTRYRLRKAEERAHILRGLAKALDQLDAVIALIRSSASADAARSGLMDL 419 Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480 + E Q AIL+++LR L LE +I EL L + ++L+S ++Q I E+ Sbjct: 420 LDIDEIQATAILDMQLRRLAALERQRILDELAELEDRIADLQAILDSPERQRQIIRDELA 479 Query: 481 EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSH---- 536 E+ E + RRT F D + +I +E + V I+ G+ + KS Sbjct: 480 EIVEKYGDD-----RRTKFVA---NDGDVSMEDLIAEEEVVVTITRTGYAKRTKSDLYRS 531 Query: 537 ----SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGH 586 + K+ D + T D IL + G KAY LP N + H Sbjct: 532 QRRGGKGVMGAALKQDDIVDHFFVGSTHDWILFFTNKGRVYRAKAYELPEANRTARGAH 590 >gi|242373651|ref|ZP_04819225.1| DNA topoisomerase IV subunit A [Staphylococcus epidermidis M23864:W1] gi|242348619|gb|EES40221.1| DNA topoisomerase IV subunit A [Staphylococcus epidermidis M23864:W1] Length = 800 Score = 378 bits (971), Expect = e-102, Method: Compositional matrix adjust. Identities = 233/696 (33%), Positives = 396/696 (56%), Gaps = 26/696 (3%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 E ++ +SL + +R+ Y+ I+ERA+PD+RDG KPV RRI+ AM G F F+K Sbjct: 3 EIIQDLSLEDVIGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMYSSGNTFDKNFRK 62 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 SA+ VG+VIG+ HPHGD SVYD++VRL+Q + R+ LI GN G+ID D AA RYTEA Sbjct: 63 SAKTVGDVIGQYHPHGDSSVYDAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEA 122 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 +++Q++E +L+ ++++ V F Y++ EP+V PS+FPNLL NG++GI+ G AT IP H Sbjct: 123 KLSQLSEELLRDINKETVSFIPNYDDTTLEPMVLPSRFPNLLVNGSTGISSGYATDIPPH 182 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 N+ E+ +A L IDNP+I++ +L++YI GPDFPTGGII + + I ++Y G+G VR+ Sbjct: 183 NLAEVIQATLKYIDNPDITVSQLMKYIKGPDFPTGGII-QGVDGIKKAYESGKGKIVVRS 241 Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314 R EE+ G ++VTEIPY+V KS L+++I EL K++ + ++RDE+ + Sbjct: 242 RVDEEELRSGRKQLIVTEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRIAI 301 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 + ++ + + ++ SD++ + NM +S GR P++M L I++ +L H+ EV+ Sbjct: 302 ELKKDVNSESIKNYLYKNSDLQISYNFNMVAISDGR-PKLMGLREIIESYLNHQIEVVTN 360 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVDAI 431 R+ + + ++R+ I++GL+ A +DE+IA+IRN K +V+ F TE Q +AI Sbjct: 361 RTRYDLDHAEKRMHIVEGLMKALSILDEVIALIRNSKNKKDAKDNLVAEFDFTEAQAEAI 420 Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491 + L+L L + ++ E D L A +K+ ++L+ I E+ E+K+ F Sbjct: 421 VMLQLYRLTNTDIVALEEEHDELEALIKKLRNILDDHDALLTVIKDELNEIKKKFK---- 476 Query: 492 LGRRRTTFCEVS--RADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA---LHFK 546 + R E+S + DK + M+ E + + I+ G+I+ + S + S + K Sbjct: 477 VDRLSAIEAEISEIKIDK----EVMVPSEEVILSITRHGYIKRTSTRSFNASGVTEIGLK 532 Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDIVT 604 +GD L +T D +L+ + G+ +P L R G+ + ++ ++ ++ ++ Sbjct: 533 DGDRLLKYQEVNTQDTVLVFTNKGRYLFIPVHKLADIRWKELGQHVSQIVPIDEDEQVIN 592 Query: 605 AF-VYDSTCKLLVVSSKGNAFIVEES-EIIANTRKGKTF--LKVSSEEKMKLVVKVTGDH 660 + D V + N I + S TR K +KV ++++ VV++ D Sbjct: 593 VYNEKDFNHDAFYVMATRNGMIKKSSVSQFKTTRFNKPLVGMKVKDKDEIINVVRLESDQ 652 Query: 661 VAVVGENRKL-LIFSIDQIPEMS-RGKGVRLQSYKD 694 + V N+ + L +S ++ + R GV+ + KD Sbjct: 653 LITVITNKGMSLTYSTAELSDTGLRAAGVKSINLKD 688 >gi|149177757|ref|ZP_01856357.1| type II DNA topoisomerase, A subunit [Planctomyces maris DSM 8797] gi|148843407|gb|EDL57770.1| type II DNA topoisomerase, A subunit [Planctomyces maris DSM 8797] Length = 802 Score = 378 bits (971), Expect = e-102, Method: Compositional matrix adjust. Identities = 256/744 (34%), Positives = 408/744 (54%), Gaps = 52/744 (6%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM-SEMGLDFGAAFK 73 + ++ V + RYL YA+S I RA+PD+RDG KPV RRI++ M ++ L A + Sbjct: 22 DRIEYVPISDVTRRRYLNYAMSVITSRALPDVRDGLKPVQRRILYVMYHDLRLMANAKPR 81 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 K A+I G+ G HPHGD SVYD+LVRLAQ F R PLI+GQGNFG+I G AAA RYTE Sbjct: 82 KCAKICGDTTGNYHPHGDASVYDALVRLAQDFNLRSPLINGQGNFGSIMGLPAAAARYTE 141 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 AR+T +AE ++ + V+ R Y+ EPVV P++FPNLL NG GIAVGMAT+IP Sbjct: 142 ARLTGIAEHLMNELRYQTVEMRPNYDGTRDEPVVLPARFPNLLVNGVHGIAVGMATNIPP 201 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E+ +A + LI + + ++ +L+++I GPDFP GG IV + S+ Y+ GRG +VR Sbjct: 202 HNLGEVIKACVHLIHHDDATVAQLMKHIKGPDFPMGGRIVTDKRSLTAVYKEGRGPVKVR 261 Query: 254 ARWCVEEVGR--GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--V 309 W E R G +VV +PY V+ L+ +I ++ ++++P L D+ DE+ + + Sbjct: 262 GEWKPEPGTRTKGVQRLVVYSVPYGVETGSLLSEIGGIVESRKLPQLVDVADETDDKNGL 321 Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVL----SMGRVPQVMPLDGILKEWL 365 +IVL K + DP+ +M ++ +++E F +NM L S VP+ L +L+ +L Sbjct: 322 KIVLEIKPDA-DPETVMAFLYKHTNLEQNFSVNMTCLVPDESEVLVPRRCDLKEMLQYFL 380 Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR----NEDKPKPVMVSRF 421 R + +R +++Q ++RR+ ILKG I + ++D+ + +IR +D K +M + F Sbjct: 381 DFRFISVRKRFEYQLQLLERRIHILKGFAIIFNDLDKALKLIRASSGKQDAAKKLMAN-F 439 Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481 L E Q AIL L+L + KLE I+ EL AE EKI +L S K+ W + E++E Sbjct: 440 PLDEIQTMAILELQLYRISKLEINTIREELAEKEAEAEKIRKILASDKRLWKVVENELKE 499 Query: 482 VKEIF--SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL-----K 534 + + F + T LG E++ D QA I +E VV+S GWI+ + K Sbjct: 500 LADEFPEKRQTKLGSSE----EITEFDP----QAYIVRENTNVVVSREGWIKRVGRLKTK 551 Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLI 594 + +L+ +EGDS+ T D ++ S+DG AYTLP + G+GE + Sbjct: 552 EGTQELAKTRTREGDSVLAVAPGSTLDHVVFFSSDGVAYTLPIEQVPVSSGYGEPLSKHA 611 Query: 595 DLNHNQDIVTAFVYDS---------------TCKLLVVSSKGNAFIVEESEI-IANTRKG 638 ++ +V A DS T +L+V+ KG + S A+T+ G Sbjct: 612 RMSDGAVLVAAVTTDSRFTPEDKATKKQPLPTPHVLIVTEKGQFMRISFSLFRTASTKAG 671 Query: 639 KTFLKVSSEEKMKLVVKV-TGDHVAVVGENRKLLIFSIDQIPEMSRG----KGVRLQSYK 693 + + ++ ++++ V + + + ++ ++L I++ +S KG+RL+ Sbjct: 672 RKYCRLGKDDRVVYAGLVEEAETMFIATQDARVLHCEIEEAALLSNAGKGVKGIRLEK-G 730 Query: 694 DGGISDVICFKICEGLTWIDSAGR 717 D I + + + L I++AG+ Sbjct: 731 DQVIGVLQLTRPSDCLRVINTAGK 754 >gi|299135952|ref|ZP_07029136.1| DNA gyrase, A subunit [Acidobacterium sp. MP5ACTX8] gi|298602076|gb|EFI58230.1| DNA gyrase, A subunit [Acidobacterium sp. MP5ACTX8] Length = 978 Score = 378 bits (971), Expect = e-102, Method: Compositional matrix adjust. Identities = 222/648 (34%), Positives = 356/648 (54%), Gaps = 70/648 (10%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + ++++ + YL Y++S I RA+PD+RDG KPVHRRI++ M EMGL F + KSA Sbjct: 50 MNSINIEEEMRRSYLDYSMSVIIGRALPDVRDGLKPVHRRILYGMQEMGLQFNKKYTKSA 109 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 ++VG V+G HPHGD ++YD++VRLAQPF RYPLI GQGNFG++DGD AA RYTE+RM Sbjct: 110 KVVGHVMGNYHPHGDSAIYDTMVRLAQPFSLRYPLIDGQGNFGSVDGDPPAAMRYTESRM 169 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 T++A +L +D D VDF Y+E SEP V P++ PNL+ NG++GIAVGMAT+IP HN+ Sbjct: 170 TRLAGEMLADIDSDTVDFTPNYDESTSEPTVLPARIPNLIVNGSTGIAVGMATNIPPHNL 229 Query: 197 QEICEAALALIDNPE----ISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252 E+ A +AL+ + +E +LE++ GPDFPTGG + R ++V++Y+ GRG F + Sbjct: 230 TEVLNATIALLQKEKGETRSDLEIVLEHVKGPDFPTGGFLY-GRGNLVQTYKTGRGRFMM 288 Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312 RA+ +E++ G I+ TEIPYQV KS LI++IAEL+ K + + D+RDES D + Sbjct: 289 RAKCGMEQITGGRQAIICTEIPYQVNKSNLIKRIAELVTEKIVDDISDVRDESDRDGMRI 348 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 + R ++++ ++ + M+ F + + G+ P+ +PL+ + ++ HR +V+ Sbjct: 349 VIELKRGAQQEIVLNQLYKHTSMQESFSMIFLAVHNGQ-PKELPLNEAIWAFIEHRIDVV 407 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFS------- 422 RR++F + R +L G IA ++D++I IIR + + S FS Sbjct: 408 RRRTAFLLNKAREREHVLLGYQIALDHLDQVIRIIRQSSSRADARENLFSYFSNRRINLR 467 Query: 423 ------------------------------------LTENQVDAILNLRLRSLRKLEEYQ 446 L+ Q+DAIL L+L L +L + Sbjct: 468 GTELQGVTLDPAKYAIDLTGGSVSAQLSNNTAGTLILSYRQIDAILELQLYRLTQLSIDE 527 Query: 447 IKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRAD 506 + +EL + + +S+L S K+ I E+ ++++ + + RRTT + S Sbjct: 528 LLNELRAVRDNISEYESILASEKKLRRVIIKELEDIRDKYGDA-----RRTTILDEST-- 580 Query: 507 KATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAH 558 + TL+ +I E + V +SN G++ R + + +E D + + Sbjct: 581 ELTLED-LIADEQVAVTVSNTGYLKRTPISTYRQQRRGGTGRLGMKTREEDFVAQLIIDS 639 Query: 559 TTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVT 604 T +L + G+ Y L + + G G+A+ L+DL + +VT Sbjct: 640 THAYLLCFTNSGRVYWLKVYEIPDIGAAGKGKAMASLVDLQPGEKVVT 687 >gi|110808537|sp|Q7XZF7|GYRA_ORYSJ RecName: Full=Probable DNA gyrase subunit A, chloroplastic/mitochondrial; Flags: Precursor Length = 939 Score = 378 bits (971), Expect = e-102, Method: Compositional matrix adjust. Identities = 257/771 (33%), Positives = 416/771 (53%), Gaps = 54/771 (7%) Query: 13 VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72 V+E V V L E Y+AYA+S + RA+PD+RDG KPVHRRI++AM EMGL F Sbjct: 78 VKERVVPVELHKEATEAYMAYAMSVLLGRALPDVRDGLKPVHRRILYAMHEMGLASRRPF 137 Query: 73 KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132 +K AR+VGEV+GK HPHGD +VY++LVR+AQ F RYPL+ G GNFG+ID D AA RYT Sbjct: 138 RKCARVVGEVLGKFHPHGDSAVYETLVRMAQDFSMRYPLVQGHGNFGSIDADPPAAMRYT 197 Query: 133 EARMTQVAELILQGVDEDA------VDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186 E R+ L D DA VDF ++ EP + P++ P+LL NG+SGIAVG Sbjct: 198 ECRLDVGCFFFL---DIDAIFIIGQVDFVPNFDNSQKEPSLLPARVPSLLLNGSSGIAVG 254 Query: 187 MATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLG 246 MAT+IP HN+ E+ + +I+NPE ++++LLE + GPDFPTGG IV + I+E+Y+ G Sbjct: 255 MATNIPPHNLGELVDVLSVMIENPEATLQELLECMPGPDFPTGGTIV-GNQGILEAYKTG 313 Query: 247 RGGFRVRARWCVE--EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304 RG +R + +E +V I++ E+PYQ KS L+E+IAEL+ K + + DIRDE Sbjct: 314 RGRVVMRGKTDIETIDVKSKRSAIIIKEVPYQTNKSTLVERIAELVEEKVLEGISDIRDE 373 Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364 S V+ R DP +++ +++ + +++ F NM + G+ P++M L IL+ + Sbjct: 374 SDRSGMRVVIELKRGADPAIVLNNLYRHTALQSSFSCNMVAILDGQ-PKLMGLKEILQAF 432 Query: 365 LAHRREVLFRRSSFRM-QAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSR 420 + R V+ RR+ F++ QA++R+ I++G++I N+D +I IIR N + ++ Sbjct: 433 IDFRCSVIERRARFKLSQALERK-HIVEGIVIGLDNLDSVIQIIRGTSNHAMARESLIKE 491 Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480 F L++ Q +A+L++ LR L LE + E +L E K++ LL++ K + I E Sbjct: 492 FGLSDKQAEALLDITLRKLTSLERKKFVDEAKSLSEEISKLNELLSNKKLIFQLILQEAT 551 Query: 481 EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL 540 ++K F+ R +F E S A +I E + +++S +G+++ +K ++ +L Sbjct: 552 DLKNKFATP------RRSFIEDS-ASTEVDDLDIIPNEEMLLILSEKGYVKRMKPNTFNL 604 Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH----------GEAI 590 K+ ++ +T+D I+ + D Y G + S R + G + Sbjct: 605 QNRGTIGKSVGKMRMNDNTSDFIVCQTHDHVLYFSDKGIVYSARAYKIPECTRAATGTPL 664 Query: 591 QLLIDLNHNQDI-----VTAFVYDSTCKLLVVSSKGNAFI--VEESEIIANTRKGKTFLK 643 L+ L+ + I V F D +L V N +I V + A G ++ Sbjct: 665 VQLLSLSDGERITSIVPVNEFGEDQYLVMLTV----NGYIKKVPLNAFSAIRTSGIISIQ 720 Query: 644 VSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVI 701 ++ +++K V + D VA+ +N +++ + +++ + R +GV K+G + Sbjct: 721 LAPGDELKWVRRCGDDDLVALASQNGMVIVNTCNKLRALGRKTRGVLAMKLKEG--DKMA 778 Query: 702 CFKICEGLTWIDSAGRSYNRSENDLLGWLG--KRGGVGSLVPKGFPRSGKF 750 I + + +Y+R + WL G+G VP R G F Sbjct: 779 SMDIIPATSH--NMPETYSRVRDLSPPWLLFIADNGIGKRVPLNAFRQGNF 827 >gi|159184789|ref|NP_354513.2| DNA gyrase subunit A [Agrobacterium tumefaciens str. C58] gi|159140077|gb|AAK87298.2| DNA gyrase subunit A [Agrobacterium tumefaciens str. C58] Length = 906 Score = 378 bits (971), Expect = e-102, Method: Compositional matrix adjust. Identities = 231/683 (33%), Positives = 367/683 (53%), Gaps = 61/683 (8%) Query: 26 LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85 ++ YL YA+S I RA+PD+RDG KPVHRRI++ MSE+G+D+ + K AR+ G+V+GK Sbjct: 1 MQRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYGMSELGIDWNKKYVKCARVTGDVMGK 60 Query: 86 LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145 HPHG+ ++YD+L R+AQ + R PLI GQGNFG+IDGD AA RYTE R+ + A +L Sbjct: 61 FHPHGNSAIYDALARMAQDWSLRLPLIDGQGNFGSIDGDPPAAERYTECRLEKAAHSLLD 120 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 +D++ VDFRD Y+ EPVV P+KFPNLL NG GIAVGMAT+IP HN+ E+ + +A Sbjct: 121 DLDKETVDFRDNYDGTLQEPVVVPAKFPNLLVNGAGGIAVGMATNIPPHNLSEVIDGCVA 180 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265 LI+NP I + ++++ I GPDFPTG +I+ R I +Y GRG +R +E + Sbjct: 181 LIENPAIELPEMMQIIPGPDFPTGALIM-GRSGIRSAYETGRGSVIMRGVATIEPMRGDR 239 Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325 I++TE+PYQV K+ +IEK+AEL+ KRI + D+RDES V+ R + +++ Sbjct: 240 EQIIITEVPYQVNKASMIEKMAELVKEKRIEGISDLRDESDRQGYRVVIELKRDANAEVI 299 Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385 + ++ + ++T F NM L+ G+ P+ M L +L+ +++ R +V+ RR+ + ++ Sbjct: 300 LNQLYRYTPLQTSFGCNMVALNGGK-PEQMTLLDMLRAFVSFREDVVSRRTKYLLRKARD 358 Query: 386 RVEILKGLLIAYLNIDEIIAIIRNEDKP----KPVMVSR--------------------- 420 R +L GL I+ NIDE+I +IR+ P + +M R Sbjct: 359 RAHVLVGLAISVANIDEVIRVIRHAPDPASAREQLMTRRWPAQDVESLIRLIDDPRHRIN 418 Query: 421 ----FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476 ++L+E Q AIL LRL L L +I EL+ + AE + +L+S + + Sbjct: 419 EDGTYNLSEEQARAILELRLARLTALGRDEIGDELNKIGAEISEYLDILSSRVRIQQIVK 478 Query: 477 CEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI------ 530 E+ +++ F RR+ E + +I +E + V +S+ G+I Sbjct: 479 DELVSIRDEFGTP-----RRSQIVE---GGPDMDDEDLIAREDMVVTVSHLGYIKRVPLT 530 Query: 531 --RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSG 583 R+ + S + ++ D + A+T +L S+ G K + LP G S Sbjct: 531 TYRAQRRGGKGRSGMATRDEDFVNRLFVANTHTPVLFFSSRGIVYKEKVWRLPIGTPQS- 589 Query: 584 RGHGEAIQLLIDLNHNQDIVTAFVYD------STCKLLVVSSKGNAFIVEESEIIANTRK 637 G+A+ ++ L + I T T ++ +++G + + + R Sbjct: 590 --KGKALINMLPLEPGERITTIMPLPEDETAWETLDVMFSTTRGTVRRNKLGDFVQVNRN 647 Query: 638 GKTFLKVSSEEKMKLVVKVTGDH 660 GK +K+ E L V+ D Sbjct: 648 GKIAMKLDEEGDEILSVETCTDR 670 >gi|332294867|ref|YP_004436790.1| DNA gyrase, A subunit [Thermodesulfobium narugense DSM 14796] gi|332177970|gb|AEE13659.1| DNA gyrase, A subunit [Thermodesulfobium narugense DSM 14796] Length = 804 Score = 378 bits (971), Expect = e-102, Method: Compositional matrix adjust. Identities = 243/660 (36%), Positives = 378/660 (57%), Gaps = 47/660 (7%) Query: 12 LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71 +VEE VK + YL YA+S I RAIPD+RDG KPV RRII+AMSEMG+ + Sbjct: 7 IVEEEVK---------DSYLDYAMSVIIGRAIPDIRDGLKPVQRRIIYAMSEMGMTYDKP 57 Query: 72 FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131 KK AR+VGEV+GK HPHGD +VYD+LVR+AQ F RYPLI G GNFG++DGD+AAA RY Sbjct: 58 HKKCARVVGEVLGKFHPHGDTAVYDALVRMAQDFTYRYPLIDGHGNFGSLDGDNAAAMRY 117 Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191 TEAR+ +++ ++ + + V +D ++ EP V P+KFP LLANG SGIAVGMATSI Sbjct: 118 TEARLAKISNTLISEMGFNIVPMQDNFDGSLKEPEVLPAKFPQLLANGASGIAVGMATSI 177 Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251 P HN+ E+ +A L ++ NP++S E+LL+ + GPDFPTGGIIV + I E + G+G Sbjct: 178 PPHNLGELIDALLLILKNPQVSEEELLKVLTGPDFPTGGIIV-GKNGIKEYFLTGKGKII 236 Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVR 310 +R R + E+G + +V++EIPY V K+ L+EKI +LI KR+ + +IRDES E +R Sbjct: 237 LRGRHKI-EMGSKTNKLVISEIPYSVNKAILVEKIDQLIKEKRLDGVSEIRDESGREGIR 295 Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370 IVL K + + + +++ ++ + M+ F + M L G VP+V+P+ +L +L R++ Sbjct: 296 IVLDLK-KGANSEKIVKKLYKHTTMQITFGVIMLSLVAG-VPKVLPVKDVLLHFLTFRKD 353 Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQ 427 + +R ++ + +R+ +L L A ID++I II+ N + K + ++E Sbjct: 354 IQRKRLEKILEDLKKRLVLLDALSKALEKIDQVIEIIKRSLNPAEAKKRLCEFLQISEEG 413 Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487 IL+LRL+ L LE +I +L+ L E ++ + LN + + E+ E+K F+ Sbjct: 414 AQGILDLRLQRLTSLEREKILKDLEKTLLEIKETEFALNDEGKFLEILENELVEIKSNFA 473 Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKE-PITVVISNRGWIRSLKSHSVDLSALHFK 546 +RRT E+S + E + V IS G+I+ +K D+ K Sbjct: 474 D-----KRRT---EISLDFEEEDILEEDIPEGEVIVTISKLGFIKRMKK---DVFERQNK 522 Query: 547 EG-------------DSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQ 591 G D ++ ++ DRIL +S+ G+AYTL A ++ S G I Sbjct: 523 GGKGIDGIQKSSAIQDRIQTSIVLSNKDRILFISSKGRAYTLLAFSIPEFSRTSRGTGIA 582 Query: 592 LLIDLNHNQDIVTAF-VYDSTCK--LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE 648 ++ L+ ++ I + + K +++ +S G ++ I++ R G +K++ E Sbjct: 583 NILPLSEDEKITFMVQIKEEEIKKDIILATSMGYLKKIKLENIVSKRRNGVIAIKLNDSE 642 >gi|225352386|ref|ZP_03743409.1| hypothetical protein BIFPSEUDO_04003 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225156893|gb|EEG70262.1| hypothetical protein BIFPSEUDO_04003 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 904 Score = 378 bits (971), Expect = e-102, Method: Compositional matrix adjust. Identities = 228/630 (36%), Positives = 355/630 (56%), Gaps = 33/630 (5%) Query: 12 LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71 +V E ++ L+ + + YLAYA+S I +RA+PD+RDG KPVHRR+I+AM + G Sbjct: 35 MVGERIQKKDLQQEMRDSYLAYAMSVIVDRALPDVRDGMKPVHRRVIYAMYDGGYRPDRG 94 Query: 72 FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131 + K AR+VGEV+GK HPHGD ++YD+LVR+AQ + RY L+ GQGNFG+ D AAA RY Sbjct: 95 YSKCARVVGEVMGKYHPHGDSAIYDTLVRMAQSWSMRYTLVDGQGNFGSPGDDPAAAMRY 154 Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191 TE RM +A +++ +D+D VDF Y+ + EP V P++FPNLL NG+SGIAVGMAT+I Sbjct: 155 TECRMAPLAMEMVRDIDKDTVDFLPNYDGKTQEPTVLPARFPNLLCNGSSGIAVGMATNI 214 Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYII----GPDFPTGGIIVESRESIVESYRLGR 247 P HN++E+ E +D+P+ S E+LLE +I GPDFPTG I+ + I ++YR GR Sbjct: 215 PPHNMREVAEGVHWALDHPDASREELLENLIRIIKGPDFPTGATIL-GHKGIEQAYRTGR 273 Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307 G +RA EE+ +G C+V+TE+PYQV RL+ I E + +I + D+RDE++ Sbjct: 274 GLITMRAVVNTEEI-KGRMCLVITELPYQVNPDRLVVSIREAVRDGKIQGIADMRDETSG 332 Query: 308 DV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365 R+VL K R P +++ +++ S ++ F NM L G VP+ + LD ++ W+ Sbjct: 333 RTGQRLVLVLK-RDAVPKVVLNNLYKHSQLQQTFGANMLALVDG-VPRTLSLDAFIRHWV 390 Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFS 422 H+ EV+ RR+++ + + R IL+G L A IDE+IA+IR + + ++ Sbjct: 391 GHQLEVIARRTAYLKREAEERDHILQGYLKALDMIDEVIALIRASESAETARTGLMDLLD 450 Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482 + E Q DAIL ++LR L LE +I E + L+ + +L ++Q + E+ Sbjct: 451 VDEVQADAILAMQLRRLAALERQKILDEHNELMRRIADYNDILAKPERQRKIVGDEL--- 507 Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---- 538 EI SK D RRT S + +I +E + V +++ G+I+ K+ Sbjct: 508 DEIVSKYGD--ERRTKILPYSGEMNV---EDLIAEENVVVTVTHSGFIKRTKADEYRAQH 562 Query: 539 ----DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQL 592 + +E D + T + +L + G+ Y L A L G G+ + Sbjct: 563 RGGKGIKGAKLREDDVVDHFFLTSTHNWLLFFTNKGRVYRLKAYELPEGSRDSKGQHVAN 622 Query: 593 LIDLNHNQDIVTAFVYDS--TCKLLVVSSK 620 L+ ++ I T + K LV++++ Sbjct: 623 LLQFGPDETIQTVLSIPNYEVAKYLVLATR 652 >gi|148557457|ref|YP_001265039.1| DNA gyrase subunit A [Sphingomonas wittichii RW1] gi|148502647|gb|ABQ70901.1| DNA gyrase subunit A [Sphingomonas wittichii RW1] Length = 936 Score = 378 bits (971), Expect = e-102, Method: Compositional matrix adjust. Identities = 240/652 (36%), Positives = 353/652 (54%), Gaps = 56/652 (8%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 ++ +S+ ++ YL YA+S I RA+PD+RDG KPVHRRI++A E G G ++KS Sbjct: 31 DISPISIIDEMKSSYLDYAMSVIVSRALPDVRDGLKPVHRRILYACQEGGFVPGRPYRKS 90 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 A+IVG+V+G HPHGD S+YD+L RLAQ + R PLI GQGNFG++D D A+ RYTEAR Sbjct: 91 AKIVGDVMGNYHPHGDSSIYDALARLAQDWAMRVPLIDGQGNFGSMDPDPPASMRYTEAR 150 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 + +VA +L +D+D V+F Y+ EP V P++FPN+L NG GIAVGMAT+IP HN Sbjct: 151 LAKVAMTLLDDLDKDTVNFTPNYDGSRDEPQVLPARFPNILVNGAGGIAVGMATNIPPHN 210 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 + E+ A A +DNP ISI++L+ + GPDFPTG +I+ + ++Y GRG +R+R Sbjct: 211 LGEVIAACKAYVDNPAISIDELMAIVPGPDFPTGALIL-GQSGARQAYHTGRGSIIMRSR 269 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLF 314 VEE IV+TEIPYQV KS L+EKIAE KRI + DIRDES + VRIV+ Sbjct: 270 HEVEESRGDRRSIVLTEIPYQVGKSGLVEKIAEAAKDKRIEGISDIRDESNRQGVRIVMD 329 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K R PD+++ ++ + +T FP NM + GR P+ + L I++ ++ R EV+ R Sbjct: 330 LK-RDATPDVVLNQLWRHTPAQTSFPANMLAIRGGR-PETLNLRDIVESFVKFREEVITR 387 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----------- 420 RS F + R IL GL+IA N+DE++ IIR P + ++SR Sbjct: 388 RSKFELNKARERAHILLGLVIAVTNLDEVVRIIRRSASPAEARAALISREWPRGEIESYI 447 Query: 421 --------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466 + L+E QV AIL+LRL L L +I EL L ++ +L Sbjct: 448 KLVEAVDTIGDAPTYQLSEVQVRAILDLRLHRLTALGRDEIGDELAKLAESIAELLEILG 507 Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526 + + + + E + F+ RRT E++ A + +IE+E + V +++ Sbjct: 508 NRVRLYQVMVEEFDAILVEFATP-----RRT---EIAPAGDDIDDEDLIEREDMVVTVTH 559 Query: 527 RGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAG 578 G+I R+ + S + K+ D++ T +L S GK Y Sbjct: 560 GGYIKRTPLEAFRAQRRGGKGRSGMATKDEDAVTELFVTSTHTPVLFFSNHGKVYRKKVW 619 Query: 579 NLLSG--RGHGEAIQLLIDLNHNQDIVTAFVYD------STCKLLVVSSKGN 622 L G + G + L+ L + I T ST ++ ++ GN Sbjct: 620 RLPEGAPQARGRPMINLLPLADGEKITTVLPLPEDEESWSTLHVVFATAHGN 671 >gi|227876547|ref|ZP_03994658.1| DNA topoisomerase (ATP-hydrolyzing) [Mobiluncus mulieris ATCC 35243] gi|227842861|gb|EEJ53059.1| DNA topoisomerase (ATP-hydrolyzing) [Mobiluncus mulieris ATCC 35243] Length = 858 Score = 378 bits (971), Expect = e-102, Method: Compositional matrix adjust. Identities = 228/592 (38%), Positives = 336/592 (56%), Gaps = 34/592 (5%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 V V L +++ YL YA+S I RA+PD+RDG KPVHRR+I+ M + G F K A Sbjct: 28 VMQVDLEKEMKKSYLDYAMSVIVGRALPDVRDGMKPVHRRVIYTMYDGGYRPNGGFSKCA 87 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+V+G HPHGD SVYD+L RL QP+ RYPL++GQGNFG+ AA RYTE +M Sbjct: 88 RVVGDVLGHFHPHGDSSVYDALARLVQPWSMRYPLVAGQGNFGSPGNLGPAAQRYTECKM 147 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 +A +++ ++ED VDF D Y+ + EP V PS+ PNLL NG GIAVGMAT IP HN+ Sbjct: 148 APLAMEMVRDIEEDTVDFMDNYDGRNQEPTVLPSRVPNLLMNGAEGIAVGMATRIPPHNL 207 Query: 197 QEICEAALALIDNPEISIEKLLEY----IIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252 +EI +AAL ++NPE S E+LLE I GPDFPTG I+ R I ++YR GRG Sbjct: 208 REIADAALWYLENPEASREELLEAAMQRIKGPDFPTGATIL-GRRGIEDTYRTGRGSIVQ 266 Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE--DVR 310 RA VEE+ G C+V TE+PYQV L+ KIA+L ++ + DIRDE+++ R Sbjct: 267 RAVVNVEEL-HGRTCLVATELPYQVNPDNLLMKIAQLTKDGQLQGIADIRDETSDRAGTR 325 Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370 +V+ K R P +++ +++ + ++ FP NM L G VP+ + LDG + W+ H+ Sbjct: 326 LVVVLK-RDAVPKVVLNNLYKRTQLQDAFPANMLALVDG-VPRTLSLDGFIHYWVVHQVN 383 Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQ 427 V+ RR+ FR++ R+ IL+G L A +DE+IA+IR + + ++ S+ E Q Sbjct: 384 VIRRRTEFRLRKAQERLHILQGYLAALDALDEVIALIRRSPTVEDARVGLMDLLSVDEVQ 443 Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487 DAIL L+LR L LE +I E L A+ +L ++Q ++ E+ E+ ++ Sbjct: 444 ADAILALQLRRLAALERQKILDEHAELEAKVADFQDILAKPERQRAIVSTELAEIANKWA 503 Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHSVD 539 R+T V A + +++ +I +E + V I+ G+ RS + Sbjct: 504 DE-----RKTAI--VPFAGEMSVED-LIPEEDMVVTITRGGFAKRTRVDAYRSQRRGGKG 555 Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGH 586 + +E D ++ + + D IL + G KAY +P G S H Sbjct: 556 VKGAQLREDDQVEHFFTSSSHDWILFFTNFGRVYRAKAYEIPEGGRDSKGQH 607 >gi|297191597|ref|ZP_06908995.1| DNA topoisomerase IV subunit A [Streptomyces pristinaespiralis ATCC 25486] gi|197719336|gb|EDY63244.1| DNA topoisomerase IV subunit A [Streptomyces pristinaespiralis ATCC 25486] Length = 816 Score = 378 bits (970), Expect = e-102, Method: Compositional matrix adjust. Identities = 211/525 (40%), Positives = 319/525 (60%), Gaps = 19/525 (3%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 EE + + + ++ +L YA S I RA+PD RDG KPVHRRI++ M+EMGL + Sbjct: 15 EERILDIDVVDEMQGSFLEYAYSVIYSRALPDARDGMKPVHRRIVYQMNEMGLRPDRGYV 74 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYT 132 K AR+VGEV+GKLHPHGD S+YD+LVR+AQPF R PL+ G GNFG++ + D AA RYT Sbjct: 75 KCARVVGEVMGKLHPHGDASIYDALVRMAQPFSMRLPLVDGHGNFGSLGNDDPPAAMRYT 134 Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192 E RM L+ + +DED VDF+ Y+ ++ EPV P+ +PNLL NG SGIAVGMAT++P Sbjct: 135 ECRMADATSLMTESIDEDTVDFQSNYDGQEREPVALPAAYPNLLVNGASGIAVGMATNMP 194 Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252 HN+ E+ AA LI +P +E L+ ++ GPD PTGG IV I ++Y GRG F++ Sbjct: 195 PHNLGEVIAAARHLIRHPGADLETLMRHVPGPDLPTGGRIV-GLTGIRDAYESGRGTFKI 253 Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD--ESAEDVR 310 RA VE V +VVTE+P+ V ++I KI +L+ +K++ + D++D + +R Sbjct: 254 RATVSVENVTARRKGLVVTELPFAVGPEKVIAKIKDLVGSKKLQGIADVKDLTDRQHGLR 313 Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370 +V+ KN P+ ++E ++ L+ ME F +N L G+ P + L +L+ +L HR + Sbjct: 314 LVIEIKN-GFIPEAVLEQLYKLTPMEESFGINNVALVDGQ-PLTLGLKELLEVYLDHRFD 371 Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQ 427 V+ RRS FR R+ +++GLL+A L+IDE+I +IR+ D + K ++ FSL+E Q Sbjct: 372 VVRRRSEFRRTKRRDRLHLVEGLLVALLDIDEVIRLIRSSDNSAQAKERLIEHFSLSEIQ 431 Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487 IL+ LR L K + +++SE D L E +++ +L S + ++ E+ V + F Sbjct: 432 TQYILDTPLRRLTKFDRIELESERDRLNGEIDELTGILESDAELRKLVSSELAAVAKKFG 491 Query: 488 KSTDLGRRRTTFCEV--SRADKATLQQAMIEKEPITVVISNRGWI 530 RRT E + A A+LQ + +P V++S+ G + Sbjct: 492 TP-----RRTVLLESAGTPAPAASLQ---VADDPCRVLLSSTGLL 528 >gi|170761292|ref|YP_001788087.1| DNA topoisomerase IV subunit A [Clostridium botulinum A3 str. Loch Maree] gi|169408281|gb|ACA56692.1| DNA topoisomerase, GyrA/ParC subunit family [Clostridium botulinum A3 str. Loch Maree] Length = 956 Score = 378 bits (970), Expect = e-102, Method: Compositional matrix adjust. Identities = 223/613 (36%), Positives = 366/613 (59%), Gaps = 30/613 (4%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 + N+ + L A+ E YL YA+ KERA+PD+RDG KPV RRI++ + + Sbjct: 10 DNNIISFPLEEAMPENYLPYAVEVSKERALPDVRDGLKPVQRRIVYGSYMLKAFPDKPYY 69 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSARIVG+++GK HPHGD SVYD++V LAQ F R PLI G GN+G+ DGDSAAA RYTE Sbjct: 70 KSARIVGDILGKYHPHGDSSVYDAMVILAQDFTTRMPLIDGHGNWGSQDGDSAAAMRYTE 129 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 AR+T +A +++ +D+D V+ D Y+ + EP V P+KFPN+L NG GIAVG+AT+IP Sbjct: 130 ARLTPIAMEMIRDIDKDVVNMVDNYSNSEKEPEVLPAKFPNILVNGAFGIAVGLATNIPP 189 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN++E+ + LA ID EI+ ++LL YI GPD PTGG+I+ ++S++ +Y G G +R Sbjct: 190 HNLEEVIDGTLAYIDKNEITTKELLNYIKGPDLPTGGVII-GKKSMLSAYETGEGRVTLR 248 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR----IPLLEDIRDESAED- 308 A+ +E++ G IV+TE P++ K+RL++ I+E+ K+ + + DIRDES + Sbjct: 249 AKTTIEKLENGRLAIVITEFPFRKNKARLLQFISEMTADKKHSKALENITDIRDESDRNG 308 Query: 309 VRIVL-FPKNRSLDP-DLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366 +R V+ F K + D + ++ ++ +D+++ NM L+ G+ P+ + L +L+ ++ Sbjct: 309 IRAVIEFKKIATQDVIEKTLKYLYKKTDLQSNISFNMVALADGK-PKTLGLKAMLEYYVE 367 Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSL 423 H++EV+ RR+ ++ ++R I++G + A +DEII IR K ++ +FS Sbjct: 368 HQKEVITRRTKRELEIAEKRFHIVEGFIKAIGIMDEIIKTIRESKSKKNARENLMQKFSF 427 Query: 424 TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483 T+ Q +AIL L L L LE + E L K+ +LNS K+ I E+ EVK Sbjct: 428 TDIQAEAILELMLYKLTGLEIVAFEKEYKELERLINKLKKILNSEKELLKVIKKELIEVK 487 Query: 484 EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSH---SV 538 E ++ +RRT+ E K +++ ++E++ + + +SN + + SLKS+ S Sbjct: 488 ETYN-----DKRRTSIIEDDEKAKIDIEEIIVEED-VVLTLSNESFAKRISLKSYNRSSA 541 Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL-----L 593 ++ + ++EGD + + +T D + L++ +G Y + N+ + + ++L Sbjct: 542 NVEDIEYREGDFNRFLIQCNTKDTLCLVTKEGNMYQIKVINIPEFKWKEKGVKLDEIIKT 601 Query: 594 IDLNHNQDIVTAF 606 IDL ++ I+ AF Sbjct: 602 IDL--SETIIEAF 612 >gi|32129333|gb|AAP73860.1| putative DNA gyrase subunit [Oryza sativa Japonica Group] Length = 931 Score = 378 bits (970), Expect = e-102, Method: Compositional matrix adjust. Identities = 257/771 (33%), Positives = 416/771 (53%), Gaps = 54/771 (7%) Query: 13 VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72 V+E V V L E Y+AYA+S + RA+PD+RDG KPVHRRI++AM EMGL F Sbjct: 78 VKERVVPVELHKEATEAYMAYAMSVLLGRALPDVRDGLKPVHRRILYAMHEMGLASRRPF 137 Query: 73 KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132 +K AR+VGEV+GK HPHGD +VY++LVR+AQ F RYPL+ G GNFG+ID D AA RYT Sbjct: 138 RKCARVVGEVLGKFHPHGDSAVYETLVRMAQDFSMRYPLVQGHGNFGSIDADPPAAMRYT 197 Query: 133 EARMTQVAELILQGVDEDA------VDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186 E R+ L D DA VDF ++ EP + P++ P+LL NG+SGIAVG Sbjct: 198 ECRLDVGCFFFL---DIDAIFIIGQVDFVPNFDNSQKEPSLLPARVPSLLLNGSSGIAVG 254 Query: 187 MATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLG 246 MAT+IP HN+ E+ + +I+NPE ++++LLE + GPDFPTGG IV + I+E+Y+ G Sbjct: 255 MATNIPPHNLGELVDVLSVMIENPEATLQELLECMPGPDFPTGGTIV-GNQGILEAYKTG 313 Query: 247 RGGFRVRARWCVE--EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304 RG +R + +E +V I++ E+PYQ KS L+E+IAEL+ K + + DIRDE Sbjct: 314 RGRVVMRGKTDIETIDVKSKRSAIIIKEVPYQTNKSTLVERIAELVEEKVLEGISDIRDE 373 Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364 S V+ R DP +++ +++ + +++ F NM + G+ P++M L IL+ + Sbjct: 374 SDRSGMRVVIELKRGADPAIVLNNLYRHTALQSSFSCNMVAILDGQ-PKLMGLKEILQAF 432 Query: 365 LAHRREVLFRRSSFRM-QAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSR 420 + R V+ RR+ F++ QA++R+ I++G++I N+D +I IIR N + ++ Sbjct: 433 IDFRCSVIERRARFKLSQALERK-HIVEGIVIGLDNLDSVIQIIRGTSNHAMARESLIKE 491 Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480 F L++ Q +A+L++ LR L LE + E +L E K++ LL++ K + I E Sbjct: 492 FGLSDKQAEALLDITLRKLTSLERKKFVDEAKSLSEEISKLNELLSNKKLIFQLILQEAT 551 Query: 481 EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL 540 ++K F+ R +F E S A +I E + +++S +G+++ +K ++ +L Sbjct: 552 DLKNKFATP------RRSFIEDS-ASTEVDDLDIIPNEEMLLILSEKGYVKRMKPNTFNL 604 Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH----------GEAI 590 K+ ++ +T+D I+ + D Y G + S R + G + Sbjct: 605 QNRGTIGKSVGKMRMNDNTSDFIVCQTHDHVLYFSDKGIVYSARAYKIPECTRAATGTPL 664 Query: 591 QLLIDLNHNQDI-----VTAFVYDSTCKLLVVSSKGNAFI--VEESEIIANTRKGKTFLK 643 L+ L+ + I V F D +L V N +I V + A G ++ Sbjct: 665 VQLLSLSDGERITSIVPVNEFGEDQYLVMLTV----NGYIKKVPLNAFSAIRTSGIISIQ 720 Query: 644 VSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVI 701 ++ +++K V + D VA+ +N +++ + +++ + R +GV K+G + Sbjct: 721 LAPGDELKWVRRCGDDDLVALASQNGMVIVNTCNKLRALGRKTRGVLAMKLKEG--DKMA 778 Query: 702 CFKICEGLTWIDSAGRSYNRSENDLLGWLG--KRGGVGSLVPKGFPRSGKF 750 I + + +Y+R + WL G+G VP R G F Sbjct: 779 SMDIIPATSH--NMPETYSRVRDLSPPWLLFIADNGIGKRVPLNAFRQGNF 827 >gi|300871740|ref|YP_003786613.1| DNA gyrase subunit A [Brachyspira pilosicoli 95/1000] gi|300689441|gb|ADK32112.1| DNA gyrase, A subunit [Brachyspira pilosicoli 95/1000] Length = 832 Score = 378 bits (970), Expect = e-102, Method: Compositional matrix adjust. Identities = 224/635 (35%), Positives = 364/635 (57%), Gaps = 51/635 (8%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 V +S+ L+E YL YA+S I RA+PD+RDG KPVHRRI++AM + L +KKSA Sbjct: 27 VDHISIENELKESYLNYAMSVIVSRALPDVRDGLKPVHRRILYAMYDANLTHDKPYKKSA 86 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 VGEV+ + HPHGD +VY ++VR+AQ F RY L+ GQGNFG++D D AA RYTEARM Sbjct: 87 ATVGEVLARYHPHGDAAVYGTMVRMAQDFSMRYLLVDGQGNFGSVDDDPPAAMRYTEARM 146 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 T+ AE +L ++++ V F +++ +EP V P+ P LL NG+ GIA+GMAT++P HN+ Sbjct: 147 TKFAEEMLNDIEKETVKFVPNFDDSRTEPSVLPATVPQLLVNGSMGIAIGMATNMPPHNL 206 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 +E+ A + ID+ + I+ L+ YI GPDFPT GII +E I E+Y G+G ++RAR Sbjct: 207 KEVVNAIVYYIDHQDAEIKDLMRYIQGPDFPTAGIIY-GKEGIKEAYTTGKGRIKLRARL 265 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE--DVRIVLF 314 +EE + IVV E+PY V K+ L EKIAEL+ +I + DIRDES+ +R+++ Sbjct: 266 EIEETKKDREAIVVKELPYGVVKTNLHEKIAELVKQGKIEGVADIRDESSNRSGIRLIIE 325 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K + + +++ ++ +D+E F + +N+ + P+V+ L ++K ++ HR EV+ + Sbjct: 326 LK-KGVATQIVLNQLWKHTDLEITFGI-INLALVNGEPKVLNLKELIKYFVDHRVEVITK 383 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAI 431 R+ + + + IL+GLLIA NI+E+I IIR N + + ++S+F L+E Q AI Sbjct: 384 RTEYDLNQAKAKAHILEGLLIAQANIEEVIRIIRQSENTEAARNTLMSKFKLSEKQAQAI 443 Query: 432 LNLRLRSLRKLEEYQIKSEL----------DNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481 L++ L+ L LE+ +I+ EL ++LLA EKI +++ K + IA + + Sbjct: 444 LDMPLKRLTALEKLKIEQELQQLREFIAYCEDLLAHPEKILAVI---KDELKNIAEKYGD 500 Query: 482 VK--EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539 + EI K+ D E+ D +I E + V I+ +G+I+ + + S Sbjct: 501 DRRSEIIGKTND--------TEIDEED-------LIHDEDVAVSITTQGFIKRVPASSYR 545 Query: 540 LSALHFKEGDSLKIA--------LHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEA 589 K A T D + + + GKA+ + + L+ G++ Sbjct: 546 TQGRGGVGVQGGKSQGEHYIEHLFVASTKDYLFIFTDRGKAFWMKVHEIPALTKTSQGKS 605 Query: 590 IQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKG 621 I+ +++L ++ I + F ++ +++V+ G Sbjct: 606 IKFILNLAPDEKITSYFTVSDFNPKQSIIMVTKMG 640 >gi|227496600|ref|ZP_03926878.1| DNA topoisomerase (ATP-hydrolyzing) [Actinomyces urogenitalis DSM 15434] gi|226833880|gb|EEH66263.1| DNA topoisomerase (ATP-hydrolyzing) [Actinomyces urogenitalis DSM 15434] Length = 860 Score = 378 bits (970), Expect = e-102, Method: Compositional matrix adjust. Identities = 222/602 (36%), Positives = 346/602 (57%), Gaps = 44/602 (7%) Query: 6 ISNSNTLVEEN----VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61 +S+ T + E ++ V L+ ++ YL YA+S I RA+PD+RDG KPVHRR+++AM Sbjct: 1 MSDETTPISEQTHDRIQPVDLQMEMQRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAM 60 Query: 62 SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121 + G ++F KS+R+VGEV+G HPHGD ++YD+L RL Q + RYPL++GQGNFG Sbjct: 61 YDGGYRPTSSFSKSSRVVGEVMGNYHPHGDAAIYDALARLVQWWSLRYPLVAGQGNFGTP 120 Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181 AA RYTE +M +A +++ +DE++VDF+D Y+ ++ EP + P++FPNLL NG+ Sbjct: 121 GNLGPAAPRYTECKMAPLAMEMVRDIDEESVDFQDNYDGKNQEPTILPARFPNLLVNGSE 180 Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYII----GPDFPTGGIIVESRE 237 GIAVGMAT IP HN++E+ +++P+ S E+LLE +I GPDFPTG I+ R Sbjct: 181 GIAVGMATRIPPHNLREVARGVQWFLEHPDASREELLEALIERIPGPDFPTGATIL-GRR 239 Query: 238 SIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL 297 I ++YR GRG RA VEE+ +G C+VVTE+PYQV L +KIA+L+ ++ Sbjct: 240 GIEDAYRTGRGSITQRAVVNVEEI-QGRQCLVVTELPYQVNPDNLADKIAQLVRDGQVGG 298 Query: 298 LEDIRDESAEDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVM 355 + DIRDE++ R+V+ K R +++ +++ + ++ FP NM L G VP+ + Sbjct: 299 IADIRDETSGRTGQRLVIVLK-RDAVAKVVLNNLYKRTQLQDNFPANMLALVDG-VPRTL 356 Query: 356 PLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDK 412 LDG ++ W+ H+ +V+ RRS FR++ R+ IL+G L A +D +IA+IR D+ Sbjct: 357 SLDGFVRHWVNHQIDVIVRRSRFRLRKAQERLHILEGYLKALDALDAVIALIRRSQTADE 416 Query: 413 PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQW 472 + ++ + E Q DAIL L+LR L LE +I+ E + L A+ + ++ S ++Q Sbjct: 417 ARGGLMGLLGVDEVQADAILALQLRRLAALERLKIQQEAEELQAKVADLKDIIASPERQR 476 Query: 473 NQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS 532 ++ E+ E+ E + RRT D + +I +E + V I+ G+ + Sbjct: 477 GIVSDELAEIVEKYGDE-----RRTRIVPF---DGEMSMEDLIPEEEVVVTITRSGYAKR 528 Query: 533 LKSHSVDLSALHFKEGDSLKIA----------LHAHTTDRILLLSTD------GKAYTLP 576 ++ D + G +K A TT LL T+ KAY LP Sbjct: 529 TRT---DAYRSQHRGGKGVKGAALREDDVVDHFFVTTTHHWLLFFTNLGRVYRAKAYELP 585 Query: 577 AG 578 G Sbjct: 586 EG 587 >gi|238650438|ref|YP_002916290.1| DNA gyrase subunit A [Rickettsia peacockii str. Rustic] gi|238624536|gb|ACR47242.1| DNA gyrase subunit A [Rickettsia peacockii str. Rustic] Length = 905 Score = 378 bits (970), Expect = e-102, Method: Compositional matrix adjust. Identities = 246/712 (34%), Positives = 387/712 (54%), Gaps = 63/712 (8%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 N+ V++ ++ YL YA+S I RAIPD+RDG KPVHRRII++M E G ++KS Sbjct: 8 NLVPVNIEDEMKVSYLDYAMSVIVSRAIPDVRDGLKPVHRRIIYSMHEAGNHASKPYRKS 67 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 ARIVG+V+GK HPHGD ++YD+LVR+AQ F R PL+ GQGNFG++DGD+AAA RYTE+R Sbjct: 68 ARIVGDVMGKYHPHGDSAIYDALVRMAQDFSLRLPLVEGQGNFGSMDGDAAAAMRYTESR 127 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 M +V+ +++ +D++ V F Y+ + EP V P+ FPNLL NG+ GIAVGMAT+IP HN Sbjct: 128 MAKVSYKLVEDIDKETVSFNPNYDGSEKEPSVLPAMFPNLLVNGSGGIAVGMATNIPPHN 187 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 + E+ +A IDN +I I LLE + GPDFPTG +I+ I +Y GRG +R R Sbjct: 188 LGEVIDACCLYIDNNDIEILDLLEVVKGPDFPTGSMIL-GISGIRSAYLTGRGSIIMRGR 246 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314 +E +G I++TEIPY V K+RL+EKIAE++ KRI + D+RDES ++ VRI + Sbjct: 247 AEIENIGNSRQAIIITEIPYMVNKARLVEKIAEMVKEKRIEGISDLRDESNKNGVRIFIE 306 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K + + ++++ I+ + ++T F + M L G +P+VM L ++ ++ R V+ Sbjct: 307 LK-KDVVAEVVLNQIYACTQLQTSFGVIMLALKDG-LPKVMNLKEVIAAFVNFREVVITN 364 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR----------- 420 R+ + + R IL GL IA NIDEII II+ + P K +++R Sbjct: 365 RTIYLLNKARDRAHILLGLTIAVSNIDEIIRIIKASNDPNAAKQELMARQWEALNILPLV 424 Query: 421 --------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466 + TE Q AIL +RL+ L +E+ +++ +L NL E + ++L Sbjct: 425 KLVDDKAMLNEQGKCNFTEVQAKAILEMRLQRLTAMEKNKLEEDLKNLTTEITEYLNILG 484 Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526 S + + E+ +VKE F+ R T E D+ + +I++E + V ++ Sbjct: 485 SRTRLLEILKEELIKVKEEFATP------RLTSIEFGEFDQDI--EDLIQREEMVVTVTL 536 Query: 527 RGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAG 578 G+I R+ K S L ++ D T +L S G+ Y+L Sbjct: 537 GGYIKRVPLSSYRAQKRGGKGRSGLSMRDEDITTQVFVGSTHTPMLFFSNIGQVYSLKLY 596 Query: 579 NL-LSG-RGHGEAIQLLIDLNHNQDIVTAFVYD------STCKLLVVSSKGNAFIVEESE 630 L LS +G G + ++ L N+ I ++ ++KGN + S+ Sbjct: 597 KLPLSNPQGKGRPMVNILPLKANEHITNIMPLPENQDERDNLNIMFATAKGN---IRRSD 653 Query: 631 IIANTR---KGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQI 678 ++ + GK +++ ++K+ V D H+ + + K L F ++ + Sbjct: 654 LLDFKKLQSNGKIAIRLDEDDKLIDVKPCKEDEHILLATKAGKALRFPVESL 705 >gi|21309846|gb|AAM46065.1|AF263924_4 DNA gyrase alpha subunit [Peanut witches'-broom phytoplasma] Length = 846 Score = 378 bits (970), Expect = e-102, Method: Compositional matrix adjust. Identities = 213/592 (35%), Positives = 354/592 (59%), Gaps = 27/592 (4%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 V+ V + +++ +L+YA+S I RA+PD+RDG KPV RRI++ M+++GL FKK+A Sbjct: 28 VQVVDINEEVKKSFLSYAMSVIVRRALPDIRDGMKPVQRRILYIMNDLGLSNQERFKKAA 87 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 +VG V+G+ HPHGD S+Y+++VR+AQ F RYPLI+G GNFG+IDGDSAAA RYTEARM Sbjct: 88 AVVGAVMGRCHPHGDNSIYEAMVRMAQDFNYRYPLITGHGNFGSIDGDSAAAMRYTEARM 147 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 +++A +++ ++++ VDF DTY+ + EP V P+ FPNLL NG++GIAVGMAT+IP HN Sbjct: 148 SKIAIELIRNIEQETVDFIDTYDGNEKEPTVLPALFPNLLVNGSTGIAVGMATNIPPHNF 207 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 +E+ A +A I+N I + L++Y+ GPDFPTGG I+ + E++ Y G+G +R++ Sbjct: 208 KEVINALIAFINNKNIETQDLMKYLKGPDFPTGGEILGA-ENLKNIYNTGKGRIFIRSKT 266 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLFP 315 + + + IV+TEIP+Q++KS LIE IA L K I + D+RDES + +++V+ Sbjct: 267 QIIQNDKNKNSIVITEIPFQIKKSSLIESIAFLAKEKIIDGITDLRDESNRQGIKLVIDL 326 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 K R ++P +++ +++ S ++ F NM L G VP+++ L +LKE+ R V+ R+ Sbjct: 327 K-RDVNPHVVLNNLYKNSQVQVSFNFNMIALVKG-VPKLVNLKQMLKEFFDFRINVIQRQ 384 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVDAIL 432 F + ++ ++K L+IA +ID ++ +I++ K ++ ++ L E Q IL Sbjct: 385 KQFELSKALKKQHLVKALIIALNDIDRVVRLIKSSSNSKMAQIQLMEKYQLDELQSKVIL 444 Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492 + L+ + LE +IK E L + + +++NS + + ++ +++ F Sbjct: 445 EMSLQKITNLEIEKIKQEDTELSLKISECQNIINSILLKEQILKQDLLNLQKNFQD---- 500 Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDS-L 551 GRR T + D + ++IEKE I + I+++G+I+ L ++D K G + Sbjct: 501 GRR--TVINMENQDLDIDKSSLIEKEKILITITHKGYIKRL---NLDTYKKQNKGGKGVI 555 Query: 552 KIALH----------AHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLL 593 I ++ T D L + GK Y + + S H + I L+ Sbjct: 556 GITMNRDDFVEHFAITSTHDYQLFFTNKGKVYQIKGYEIASYSRHAKGIPLV 607 >gi|328949381|ref|YP_004366718.1| DNA gyrase, A subunit [Treponema succinifaciens DSM 2489] gi|328449705|gb|AEB15421.1| DNA gyrase, A subunit [Treponema succinifaciens DSM 2489] Length = 818 Score = 378 bits (970), Expect = e-102, Method: Compositional matrix adjust. Identities = 230/617 (37%), Positives = 348/617 (56%), Gaps = 30/617 (4%) Query: 3 VDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62 ++N N+ L++ + + +++ ++ Y++S I RA+PD RDG KPVHRRII++M Sbjct: 1 MENTENTTNLIK-----IPIEDEVKQAFIDYSMSVIVSRALPDSRDGLKPVHRRIIYSME 55 Query: 63 EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122 E L G KK A IVG+V+GK HPHGD SVYD+LVRL Q F QRY ++ GNFG I Sbjct: 56 ENHLSAGGKTKKCATIVGDVLGKYHPHGDASVYDALVRLGQDFSQRYIVVHPGGNFGTIA 115 Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182 GD AAYRYTEA+MT++AE +++ +++D VD Y++ EP V PSKFP LL NG+ G Sbjct: 116 GDPPAAYRYTEAKMTKIAEEMVEDINKDTVDMIPNYDDTKEEPTVLPSKFPFLLCNGSVG 175 Query: 183 IAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVES 242 IAVGMAT++P HN++E+ A A IDN I++++LL +I GPDFPTGGII + I ++ Sbjct: 176 IAVGMATNMPPHNLREVASAISAYIDNQNITVDELLNHIKGPDFPTGGIIF-GKHGIADA 234 Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302 YR GRG VR R+ +E G IV TE+PY V L EKI EL K I + I Sbjct: 235 YRTGRGKILVRGRFNIEVSKTGLESIVFTEVPYGVNTRTLCEKIGELARDKVIDGISAIN 294 Query: 303 DESAE--DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360 DES++ +RIV+ K R +++ +F + +++ F + L GR PQ++ L I Sbjct: 295 DESSDRSGMRIVIHLK-RGAITKVVINQLFAKTALQSSFGVINLALVKGR-PQILNLKQI 352 Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAII---RNEDKPKPVM 417 +K ++ HR EV+ RR +F + R IL+ L+ A IDE+I +I R+E + K + Sbjct: 353 IKCFVDHRDEVITRRVTFDLNKARAREHILEALITAVDAIDEVIKMIRSSRDETEAKARL 412 Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477 + RF E Q +AI+ +RL L L +++ E++ + A + LL ++ I Sbjct: 413 MQRFGFDEIQAEAIVEMRLGRLTNLRIDELRKEMEEVKAFIAHCEDLLAHHEKILAIIKD 472 Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHS 537 E E+ E + G R T + ++ +I++E + ++IS G+I+ + Sbjct: 473 ETNELSEKY------GDDRKTDIVAGEVESINVED-LIKEEDMVILISKLGYIKRVSVSQ 525 Query: 538 VDLSALHFK--------EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHG 587 K E D + A T D ++ ++T+GKAY + + S G Sbjct: 526 YKSQGRGGKGTISAKLVEEDYINQMFVASTHDYLMFITTEGKAYWIKVHEIPEASKTSRG 585 Query: 588 EAIQLLIDLNHNQDIVT 604 I+ L+ +N N+DI T Sbjct: 586 SHIKSLLAVNANEDITT 602 >gi|212715156|ref|ZP_03323284.1| hypothetical protein BIFCAT_00042 [Bifidobacterium catenulatum DSM 16992] gi|212661837|gb|EEB22412.1| hypothetical protein BIFCAT_00042 [Bifidobacterium catenulatum DSM 16992] Length = 894 Score = 378 bits (970), Expect = e-102, Method: Compositional matrix adjust. Identities = 228/630 (36%), Positives = 355/630 (56%), Gaps = 33/630 (5%) Query: 12 LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71 +V E ++ L+ + + YLAYA+S I +RA+PD+RDG KPVHRR+I+AM + G Sbjct: 35 MVGERIQKKDLQQEMRDSYLAYAMSVIVDRALPDVRDGMKPVHRRVIYAMYDGGYRPDRG 94 Query: 72 FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131 + K AR+VGEV+GK HPHGD ++YD+LVR+AQ + RY L+ GQGNFG+ D AAA RY Sbjct: 95 YSKCARVVGEVMGKYHPHGDSAIYDTLVRMAQSWSMRYTLVDGQGNFGSPGDDPAAAMRY 154 Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191 TE RM +A +++ +D+D VDF Y+ + EP V P++FPNLL NG+SGIAVGMAT+I Sbjct: 155 TECRMAPLAMEMVRDIDKDTVDFLPNYDGKTQEPTVLPARFPNLLCNGSSGIAVGMATNI 214 Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYII----GPDFPTGGIIVESRESIVESYRLGR 247 P HN++E+ E +D+P+ S E+LLE +I GPDFPTG I+ + I ++YR GR Sbjct: 215 PPHNMREVAEGVHWALDHPDASREELLENLIRIIKGPDFPTGATIL-GHKGIEQAYRTGR 273 Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307 G +RA EE+ +G C+V+TE+PYQV RL+ I E + +I + D+RDE++ Sbjct: 274 GLITMRAVVNTEEI-KGRMCLVITELPYQVNPDRLVVSIREAVRDGKIQGIADMRDETSG 332 Query: 308 DV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365 R+VL K R P +++ +++ S ++ F NM L G VP+ + LD ++ W+ Sbjct: 333 RTGQRLVLVLK-RDAVPKVVLNNLYKHSQLQQTFGANMLALVDG-VPRTLSLDAFIRHWV 390 Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFS 422 H+ EV+ RR+++ + + R IL+G L A IDE+IA+IR + + ++ Sbjct: 391 GHQLEVIARRTAYLKREAEERDHILQGYLKALDMIDEVIALIRASESAEVARTGLMDLLD 450 Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482 + E Q DAIL ++LR L LE +I E + L+ + +L ++Q + E+ Sbjct: 451 VDEVQADAILAMQLRRLAALERQKILDEHNELMRRIADYNDILAKPERQRKIVGDEL--- 507 Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---- 538 EI SK D RRT S + +I +E + V +++ G+I+ K+ Sbjct: 508 DEIVSKYGD--ERRTKILPYSGEMNV---EDLIAEENVVVTVTHSGFIKRTKADEYRAQH 562 Query: 539 ----DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQL 592 + +E D + T + +L + G+ Y L A L G G+ + Sbjct: 563 RGGKGIKGAKLREDDVVDHFFLTSTHNWLLFFTNKGRVYRLKAYELPEGSRDSKGQHVAN 622 Query: 593 LIDLNHNQDIVTAFVYDS--TCKLLVVSSK 620 L+ ++ I T + K LV++++ Sbjct: 623 LLQFGPDETIQTVLSIPNYEVAKYLVLATR 652 >gi|15892196|ref|NP_359910.1| DNA gyrase subunit A [Rickettsia conorii str. Malish 7] gi|20138264|sp|Q92IZ6|GYRA_RICCN RecName: Full=DNA gyrase subunit A gi|15619329|gb|AAL02811.1| DNA gyrase subunit A [Rickettsia conorii str. Malish 7] Length = 905 Score = 378 bits (970), Expect = e-102, Method: Compositional matrix adjust. Identities = 245/712 (34%), Positives = 389/712 (54%), Gaps = 63/712 (8%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 N+ V++ ++ YL YA+S I RAIPD+RDG KPVHRRII++M E G ++KS Sbjct: 8 NLVPVNIEDEMKVSYLDYAMSVIVSRAIPDVRDGLKPVHRRIIYSMHEAGNHASKPYRKS 67 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 ARIVG+V+GK HPHGD ++YD+LVR+AQ F R PL+ GQGNFG++DGD+AAA RYTE+R Sbjct: 68 ARIVGDVMGKYHPHGDSAIYDALVRMAQDFSLRLPLVDGQGNFGSMDGDAAAAMRYTESR 127 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 M +V+ +++ +D++ V F Y+ + EP V P+ FPNLL NG+ GIAVGMAT+IP HN Sbjct: 128 MAKVSYKLVEDIDKETVSFNPNYDGSEEEPSVLPAMFPNLLVNGSGGIAVGMATNIPPHN 187 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 + E+ +A IDN +I I LLE + GPDFPTG +I+ I +Y GRG +R R Sbjct: 188 LGEVIDACCLYIDNNDIEILDLLEVVKGPDFPTGSMIL-GISGIRSAYLTGRGSIIMRGR 246 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314 +E +G I++TEIPY V K+RL+EKIAE++ KRI + D+RDES ++ VRI + Sbjct: 247 AEIENIGNNRQAIIITEIPYMVNKARLVEKIAEMVKEKRIEGISDLRDESNKNGVRIFIE 306 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K + + ++++ I+ + ++T F + M L G +P+VM L ++ +++ R V+ Sbjct: 307 LK-KDVVAEVVLNQIYACTQLQTSFGVIMLALKDG-LPKVMNLKEVIAAFVSFREVVITN 364 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSR----------- 420 R+ + + R IL GL IA NIDEII II+ + + K +++R Sbjct: 365 RTIYLLNKARDRAHILLGLTIAVSNIDEIIRIIKASNDSNAAKQELMARQWEALNILPLV 424 Query: 421 --------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466 + TE Q AIL +RL+ L +E+ +++ +L NL+ E + ++L Sbjct: 425 KLVDDKAMLNEQGKCNFTEVQAKAILEMRLQRLTAMEKNKLEEDLKNLITEITEYLNILG 484 Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526 S + + E+ +VKE F+ R T E D+ + +I++E + V ++ Sbjct: 485 SRTRLLEILKEELIKVKEEFATP------RLTSIEFGEFDQDI--EDLIQREEMVVTVTL 536 Query: 527 RGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAG 578 G+I R+ K S L ++ D T +L S G+ Y+L Sbjct: 537 GGYIKRVPLSSYRAQKRGGKGRSGLSMRDEDITTQVFVGSTHTPMLFFSNIGQVYSLKLY 596 Query: 579 NL-LSG-RGHGEAIQLLIDLNHNQDIVTAFVYD------STCKLLVVSSKGNAFIVEESE 630 L LS +G G + ++ L N+ I ++ ++KGN + S+ Sbjct: 597 KLPLSNPQGKGRPMVNILPLKANEHITNIMPLPENQDERDNLNIMFATAKGN---IRRSD 653 Query: 631 IIANTR---KGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENRKLLIFSIDQI 678 ++ + GK +++ ++K+ V D H+ + + K L F ++ + Sbjct: 654 LLDFKKLQSNGKIAIRLDEDDKLIDVKPCKEDEHILLATKAGKALRFPVESL 705 >gi|158311874|ref|YP_001504382.1| DNA gyrase subunit A [Frankia sp. EAN1pec] gi|158107279|gb|ABW09476.1| DNA gyrase, A subunit [Frankia sp. EAN1pec] Length = 837 Score = 377 bits (969), Expect = e-102, Method: Compositional matrix adjust. Identities = 235/696 (33%), Positives = 390/696 (56%), Gaps = 41/696 (5%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 + ++ + + ++ YL YA+S I RA+P++RDG KPVHRR+++AM + G + K Sbjct: 11 DRIEPIGIEVEMQRSYLDYAMSVIVGRALPEVRDGLKPVHRRVLYAMYDGGYRPDRGYFK 70 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 +R+VG+V+G HPHGD ++YD+LVRLAQP+ RYPL+ G GNFG+ D AA RYTEA Sbjct: 71 CSRVVGDVMGNYHPHGDSAIYDTLVRLAQPWSLRYPLVDGNGNFGSPGNDPPAAMRYTEA 130 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 RM +A +L+ +D++ VDF Y+ EP+V PS+FPNLL NG GIAVGMAT+IP H Sbjct: 131 RMAPLAMEMLRDIDQETVDFAPNYDGRSQEPLVLPSRFPNLLVNGAGGIAVGMATNIPPH 190 Query: 195 NVQEICEAALALIDNPEISIEKLLEYII----GPDFPTGGIIVESRESIVESYRLGRGGF 250 N+ E+ + +D+PE + E+LLE ++ GPDFPT G+IV R I ++YR GRG Sbjct: 191 NLVEVAKGVQWSLDHPEATAEELLEALLGIIKGPDFPTHGLIV-GRNGIEDAYRTGRGSI 249 Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV- 309 R+RA VEE +G +VVTE+PYQV L EKIAEL+ ++ + D+RDE++ + Sbjct: 250 RMRAVVNVEE-NKGRTQLVVTELPYQVNPDNLAEKIAELVRDNKVTGISDVRDETSARIG 308 Query: 310 -RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368 R+V+ K R +++ +++ + ++ F +NM + G VP+ + LD ++ ++ H+ Sbjct: 309 QRLVIDLK-RDAVAKVVLNNLYKHTQLQDTFGVNMLAIVDG-VPRTLRLDQMISYYVEHQ 366 Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTE 425 +V+ RR+ ++++ R+ +L GLLIA ++DE+IA+IRN + + +++RFSL+E Sbjct: 367 VDVIVRRTRYQLRKARERLHVLDGLLIALDHLDEVIALIRNAESAEVARGQLMARFSLSE 426 Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485 Q AIL+++LR L LE +I E L A+ ++++++L S +Q I E+ EV E Sbjct: 427 IQATAILDMQLRRLAFLERQRIIDEAAELRAKIDELEAILASPVRQREIIGQELAEVVEK 486 Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHS 537 F RRT D + + +I +E + V ++ G+ RS K Sbjct: 487 FGDE-----RRTRLVPFE-GDMSV--EDLIAREDVVVTVTRGGYAKRTKTDLYRSQKRGG 538 Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLID 595 + +E D ++ T +L + G+ Y A L + G+ + ++ Sbjct: 539 KGVQGAALREDDIVEHFFVTTTHHWLLFFTNKGRVYRAKAHELPEQARSAKGQHVANILA 598 Query: 596 LNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM-- 650 + ++ I Y + L++ + +G ++ +N G + + ++++ Sbjct: 599 FSQDERIAEVMAIQDYQAAPYLVLATKRGLCKKTALTDFDSNRAGGLVAINLRDDDELIS 658 Query: 651 -KLVVKVTGDHVAVVGENRKLLIFSID--QIPEMSR 683 +LV GD + +V N + + F D Q+ M R Sbjct: 659 ARLVAP--GDDLLLVSRNAQSIRFHADDEQLRPMGR 692 >gi|94497965|ref|ZP_01304529.1| DNA gyrase, A subunit [Sphingomonas sp. SKA58] gi|94422548|gb|EAT07585.1| DNA gyrase, A subunit [Sphingomonas sp. SKA58] Length = 896 Score = 377 bits (969), Expect = e-102, Method: Compositional matrix adjust. Identities = 233/639 (36%), Positives = 351/639 (54%), Gaps = 66/639 (10%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 ++ +S+ ++ YL YA+S I RA+PD+RDG KPVHRRI+ + E G + ++KS Sbjct: 12 DISPISIVDEMKASYLDYAMSVIVARALPDVRDGLKPVHRRILFSAQESGFVYNRPYRKS 71 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 AR+VGEV+GK HPHGD S+YD+L R+ Q + R PLI GQGNFG++D D AA RYTEAR Sbjct: 72 ARLVGEVMGKYHPHGDSSIYDALARMTQDWSMRVPLIDGQGNFGSMDPDPPAAMRYTEAR 131 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 + +VA +L +D+D VDF+ Y+ ++EP V P++FPNLL NG GIAVGMAT+IP HN Sbjct: 132 LAKVATALLDDLDKDTVDFQPNYDASENEPQVLPARFPNLLVNGAGGIAVGMATNIPPHN 191 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 + E+ A LA IDNP IS ++L++ + GPDFPT +I+ + +Y GRG +RAR Sbjct: 192 LGEVLRACLAYIDNPGISTDELIQIVPGPDFPTAPLIL-GQSGARSAYNTGRGSIIMRAR 250 Query: 256 WCVEEVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVL 313 VEE GRG IV+T IPYQV KS L+EKIAE KR+ + DIRDES E VRIV+ Sbjct: 251 HDVEE-GRGDRRSIVLTSIPYQVGKSGLVEKIAEAAKDKRVEGISDIRDESNREGVRIVM 309 Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373 K R P++++ ++ + ++ FP NM + GR P+++ L I++ ++ R EV+ Sbjct: 310 DLK-RDATPEVVLNQLWRNTPAQSSFPANMLAIRGGR-PEILGLRDIIEAFIKFREEVIT 367 Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR---------- 420 RR+ + + R IL GL++A N+DE++ IIR P + ++++ Sbjct: 368 RRTKYELNKARDRAHILLGLVVAVTNLDEVVKIIRGSASPAEARETLLAKEWPIGEIAPY 427 Query: 421 ---------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLL 465 + L++ QV AIL+LRL L L +I EL L + ++L Sbjct: 428 LRLVEAIENDIDGDSYRLSDIQVRAILDLRLHRLTALGRDEIGKELAELAEAITEYLAIL 487 Query: 466 NSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVIS 525 + + + E+ ++ F+ E++ A + +IE+E + V ++ Sbjct: 488 ADRVKLYAVMREELEAIEREFATP--------RLSEITAAADGIEDEDLIEREDMVVTVT 539 Query: 526 NRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL-- 575 +G+I R+ S + K+ D++ T +L ST GK Y L Sbjct: 540 MQGYIKRTPLDTFRAQARGGKGRSGMATKDEDAITELFVTSTHTPVLFFSTAGKVYRLKV 599 Query: 576 -------------PAGNLLSGRGHGEAIQLLIDLNHNQD 601 P NLL G GE I ++ L +++ Sbjct: 600 WRLPEGGPATRGRPMVNLLP-LGPGETISTVLPLPEDEE 637 >gi|254384499|ref|ZP_04999840.1| DNA topoisomerase IV subunit A [Streptomyces sp. Mg1] gi|194343385|gb|EDX24351.1| DNA topoisomerase IV subunit A [Streptomyces sp. Mg1] Length = 818 Score = 377 bits (969), Expect = e-102, Method: Compositional matrix adjust. Identities = 212/541 (39%), Positives = 325/541 (60%), Gaps = 19/541 (3%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 EE + + + ++ +L YA S I RA+PD RDG KPVHRRI++ M+EMGL + Sbjct: 15 EEKILDIDVVDEMQGSFLEYAYSVIYSRALPDARDGMKPVHRRIVYQMNEMGLRPDRGYV 74 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYT 132 K AR+VGEV+GKLHPHGD S+YD+LVR+AQPF R PL+ G GNFG++ + D AA RYT Sbjct: 75 KCARVVGEVMGKLHPHGDASIYDALVRMAQPFSMRLPLVDGHGNFGSLGNDDPPAAMRYT 134 Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192 E +M L+ + +DED VDF Y+ ++ EPV P+ +PNLL NG SGIAVGMAT++P Sbjct: 135 ECKMADATSLMTESIDEDTVDFTANYDGQEREPVALPAAYPNLLVNGASGIAVGMATNMP 194 Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252 HN+ E+ AA LI P+ +E L+ ++ GPD PTGG IV I ++Y GRG F++ Sbjct: 195 PHNLGEVIAAARHLIRYPQADLEALMRFVPGPDLPTGGRIV-GLSGIKDAYENGRGTFKI 253 Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD--ESAEDVR 310 RA VE V +VVTE+P+ V ++I KI +L+ +K++ + D++D + + +R Sbjct: 254 RATVAVETVTARRKGLVVTELPFTVGPEKVIAKIKDLVGSKKLQGIADVKDLTDRSHGLR 313 Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370 +V+ KN P+ ++E ++ L+ ME F +N L G+ P + L +L+ +L HR E Sbjct: 314 LVIEIKN-GFHPEAVLEQLYKLTPMEESFGINNVALVDGQ-PLTLGLKELLEVYLDHRFE 371 Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQ 427 V+ RRS FR R+ +++GLL+A L+IDE+I +IR+ D + K ++ RFSL+E Q Sbjct: 372 VVRRRSEFRRTKRRDRLHLVEGLLVALLDIDEVIRLIRDSDNSAQAKERLIERFSLSEIQ 431 Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487 IL+ LR L + + +++SE D L E +++ +L S + ++ E+ V + F Sbjct: 432 TQYILDTPLRRLTRFDRIELESERDRLNGEIDELTGILESDSELRKLVSAELAAVAKKFG 491 Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKE 547 RRT E + A + + + P V++S+ G + + + + AL +E Sbjct: 492 TE-----RRTVLLESAGTPVAAVPLEVADT-PCRVLLSSTGLL----ARTANGEALPQEE 541 Query: 548 G 548 G Sbjct: 542 G 542 >gi|187933441|ref|YP_001884983.1| DNA topoisomerase IV subunit A [Clostridium botulinum B str. Eklund 17B] gi|187721594|gb|ACD22815.1| DNA gyrase subunit A [Clostridium botulinum B str. Eklund 17B] Length = 969 Score = 377 bits (969), Expect = e-102, Method: Compositional matrix adjust. Identities = 216/600 (36%), Positives = 355/600 (59%), Gaps = 29/600 (4%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 + N+ V L A+ E YL YA+ KERA+PD+RDG KPVHRRI++ + + Sbjct: 11 DNNIIKVPLEEAMPENYLPYAIEVAKERALPDVRDGLKPVHRRILYGAYLLKAFPDRPYY 70 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSARIVG+++GK HPHGD SVYD++ LAQ F R PLI G GN+G+IDGDSAAA RYTE Sbjct: 71 KSARIVGDILGKFHPHGDSSVYDAMTILAQNFSTRAPLIDGHGNWGSIDGDSAAAMRYTE 130 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 AR+ ++ +L+ +D+D VD Y++ + EP V PS++PNLL NG+ GIAVG+AT+IP Sbjct: 131 ARLAPISMEMLRDIDKDTVDMVPNYSDSEFEPKVLPSRYPNLLVNGSFGIAVGLATNIPP 190 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN++E+ LA IDN EI I++L+EYI GPD PTGGI++ + S+ +Y G G R Sbjct: 191 HNLKEVTNGVLAYIDNNEIDIKELMEYIKGPDLPTGGILI-GKNSLRSAYESGVGKVAYR 249 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELI----IAKRIPLLEDIRDESAED- 308 A+ +E++ G I +TE PY+ K++L++ I+E+ +K + L+ DIRDES + Sbjct: 250 AKTNIEKLDSGRIGIAITEFPYRRNKAKLLQTISEMTGDRKHSKALELISDIRDESDRNG 309 Query: 309 VRIVLFPKNRSLDPD---LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365 +R V+ K +S D D +++ +F ++++ NM L+ G+ P+ M L +++ ++ Sbjct: 310 IRAVIELK-KSADEDSANKILKYLFKKTELQCNISFNMVALADGK-PETMSLKDMIRHYV 367 Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFS 422 H++E++ RRS ++ +R I++G + A +DE+IA IR+ K ++ +F+ Sbjct: 368 NHQKEIVTRRSEKELEVAKKRFHIVEGFIKAIDVLDEVIATIRSSKSKKDASNNLIEKFA 427 Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482 T Q AIL L L L LE + E L ++++ +L++ K+ I E++E+ Sbjct: 428 FTAEQAQAILELMLYRLTGLEIKVFEKEYKELEKIIKRLEKILSNEKELLKVIKFELKEI 487 Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS------LKSH 536 + + R+T E K +++ +I +E + + +S G+I+ ++S+ Sbjct: 488 SDKYG-----DERKTHIIEDDTKSKIDVEELIIVEE-VMITLSKEGFIKRIPVKNYIRSN 541 Query: 537 SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLI 594 S + + ++EGD L+ + ++T D +L+ + G Y + N+ L + GE + +I Sbjct: 542 S-NPEDIEYREGDKLEYLISSNTRDSLLIFTNKGFMYQVKGINIPELKWKEKGERLDTII 600 >gi|117928629|ref|YP_873180.1| DNA topoisomerase IV subunit A [Acidothermus cellulolyticus 11B] gi|117649092|gb|ABK53194.1| DNA topoisomerase IV subunit A [Acidothermus cellulolyticus 11B] Length = 813 Score = 377 bits (969), Expect = e-102, Method: Compositional matrix adjust. Identities = 218/559 (38%), Positives = 328/559 (58%), Gaps = 15/559 (2%) Query: 30 YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89 YL YA S I RA+PD RDG KPVHRRI++ M EMGL K AR+VG+V+GKLHPH Sbjct: 33 YLEYAYSVIYSRALPDARDGLKPVHRRILYQMREMGLRSDRPHVKCARVVGDVMGKLHPH 92 Query: 90 GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD-SAAAYRYTEARMTQVAELILQGVD 148 GD ++YD+LVR+AQPF PL+ G GNFG++ GD AAYRYTE RMT AE + +D Sbjct: 93 GDMAIYDALVRMAQPFAMWLPLVDGHGNFGSLGGDDPPAAYRYTECRMTAAAEAMTADLD 152 Query: 149 EDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208 ED VDF Y+ +++EPVV P+ FPNLL NG SGIAVGMAT++P HN+ E+ AA L++ Sbjct: 153 EDVVDFAPNYDGQETEPVVLPAAFPNLLVNGASGIAVGMATNMPPHNLGEVVAAARYLLE 212 Query: 209 NPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCI 268 NP+ S+++L+ ++ GPD PTGG IV + + E+Y GRG FR+RA +EEV I Sbjct: 213 NPQASLDELMRWVPGPDLPTGGEIV-GLDGVREAYATGRGSFRMRATARIEEVRGRRKGI 271 Query: 269 VVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD--ESAEDVRIVLFPKNRSLDPDLLM 326 VVTE+PY V R++ +I +L+ AK++ + D+RD + +R+V+ + DP ++ Sbjct: 272 VVTELPYGVGPERVVARIKDLVSAKKLAGIADVRDLTDRHHGLRVVIEVRQ-GFDPQAVL 330 Query: 327 ESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRR 386 + ++ L+ +E F +N L G+ P+ + L +L+ ++ HR EV RRS+FR + + + Sbjct: 331 DQLYKLTPLEESFAVNNVALVDGQ-PRTLGLADLLQVYVGHRIEVTRRRSAFRKKRREAQ 389 Query: 387 VEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAILNLRLRSLRKLE 443 + I++G L A ++ID +IAIIR D + + ++ F LTE Q + IL+L LR L K Sbjct: 390 LHIVEGRLRAIVDIDRVIAIIRASDDTAQARDALMETFGLTEVQANDILDLPLRRLTKFS 449 Query: 444 EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVS 503 + ++++E D L + + +L S ++ ++ E+ V E F+ R T Sbjct: 450 KIELEAERDELRRDIASLGDILGSEQRLRAVVSAELAAVAEQFATP------RRTRLTAD 503 Query: 504 RADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRI 563 T + I P VV+S G + D++ A+ T + Sbjct: 504 DGSPVTSRPLEIPDSPCCVVLSATGLLARTTGPGFPSGDADRARHDAIADAVEVTTRGDV 563 Query: 564 LLLSTDGKAYTLPAGNLLS 582 L+++ G+ LP +L S Sbjct: 564 GLITSQGRVLRLPVLDLPS 582 >gi|188587953|ref|YP_001920143.1| DNA topoisomerase IV subunit A [Clostridium botulinum E3 str. Alaska E43] gi|188498234|gb|ACD51370.1| DNA gyrase subunit A [Clostridium botulinum E3 str. Alaska E43] Length = 969 Score = 377 bits (969), Expect = e-102, Method: Compositional matrix adjust. Identities = 216/600 (36%), Positives = 357/600 (59%), Gaps = 29/600 (4%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 + N+ V L A+ E YL YA+ KERA+PD+RDG KPVHRRI++ + + Sbjct: 11 DNNIIKVPLEEAMPENYLPYAIEVAKERALPDVRDGLKPVHRRILYGAYLLKAFPDRPYY 70 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSARIVG+++GK HPHGD SVYD++ LAQ F R PLI G GN+G+IDGDSAAA RYTE Sbjct: 71 KSARIVGDILGKFHPHGDSSVYDAMTILAQNFSTRAPLIDGHGNWGSIDGDSAAAMRYTE 130 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 AR+ ++ +L+ +D+D VD Y++ + EP V PS++PNLL NG+ GIAVG+AT+IP Sbjct: 131 ARLAPISMEMLRDIDKDTVDMVPNYSDSEFEPKVLPSRYPNLLVNGSFGIAVGLATNIPP 190 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN++E+ + LA IDN EI I++L+E+I GPD PTGGI++ + S+ +Y G G R Sbjct: 191 HNLKEVTDGVLAYIDNNEIDIKELMEHIKGPDLPTGGILI-GKNSLRSAYESGVGKVAYR 249 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR----IPLLEDIRDESAED- 308 A+ +E++ G I +TE PY+ K++L++ I+E+ +R + L+ DIRDES + Sbjct: 250 AKTNIEKLDSGRIGIAITEFPYRRNKAKLLQTISEMTGDRRHSKALELISDIRDESDRNG 309 Query: 309 VRIVLFPKNRSLDPD---LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365 +R V+ K +S D D +++ +F ++++ NM L+ G+ P+ M L +++ ++ Sbjct: 310 IRAVIELK-KSADEDSANKILKYLFKKTELQCNISFNMVALADGK-PETMSLKDMIRHYV 367 Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFS 422 H++E++ RRS ++ +R I++G + A +DE+IAIIR+ K ++ +F+ Sbjct: 368 NHQKEIVTRRSEKELEVAKKRFHIVEGFIKAIDVLDEVIAIIRSSKSKKDASNNLIEKFA 427 Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482 T Q AIL L L L LE + E L ++++ +L++ K+ I E++E+ Sbjct: 428 FTAEQAQAILELMLYRLTGLEIKVFEKEYKELEKIIKRLEKILSNEKELLKVIKFELKEI 487 Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS------LKSH 536 + + R+T E K +++ +I +E + + +S G+I+ ++S+ Sbjct: 488 SDKYG-----DERKTNIIEDDAKSKIDIEELIIVEE-VMITLSKDGFIKRIPVKNYIRSN 541 Query: 537 SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLI 594 S + + ++EGD L+ + ++T D +L+ + G Y + N+ L + GE + +I Sbjct: 542 S-NPEDIEYREGDKLEYLISSNTRDSLLIFTDKGFMYQVKGINIPELKWKEKGERLDTII 600 >gi|262341254|ref|YP_003284109.1| DNA gyrase subunit A [Blattabacterium sp. (Blattella germanica) str. Bge] gi|262272591|gb|ACY40499.1| DNA gyrase subunit A [Blattabacterium sp. (Blattella germanica) str. Bge] Length = 820 Score = 377 bits (969), Expect = e-102, Method: Compositional matrix adjust. Identities = 220/611 (36%), Positives = 359/611 (58%), Gaps = 34/611 (5%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 E + +++ ++ Y+ Y++S I RA+PD+RDG KPVHRR+++ M ++G+ +++KK Sbjct: 5 EKLIPINIEDEMKSSYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMYQLGIFSNSSYKK 64 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 SARIVGEV+GK HPHGD SVY+++VRLAQ + RYPLI GQGNFG++D D AA RYTE Sbjct: 65 SARIVGEVLGKYHPHGDISVYETMVRLAQKWTLRYPLIDGQGNFGSLDADPPAAMRYTEV 124 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 RM Q++E +L + ++ VD + +++ EP V P++ PNLL NG+SGIAVGMAT+IP H Sbjct: 125 RMRQISEEMLLDIKKETVDMQLNFDDSLEEPTVLPTRIPNLLINGSSGIAVGMATNIPPH 184 Query: 195 NVQEICEAALALID-NPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 N++E A A ID N +S+E++++Y+ PDFPTGGII + + ++ G+G +R Sbjct: 185 NLKETINAICAYIDNNNNLSVEEIMKYMKAPDFPTGGIIY-GYDGVKNAFHTGKGRIVLR 243 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIV 312 A+ EE+ +G CI+V EIPYQV KS +I + L+ ++ + IRDES + +RIV Sbjct: 244 AKVHFEEI-QGRQCIIVDEIPYQVNKSDMITRTIGLMKEGKMEGIYQIRDESDRNGLRIV 302 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 K + +P++L+ +F + ++T F +N L G+ P + + +++ ++ HR +V+ Sbjct: 303 YILKQNT-NPNILLNKLFQYTPLQTSFNVNNIALVNGK-PLQLNIKDMIQHFVDHRHDVI 360 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVD 429 RRS + ++ RV IL G ++D +I +I+ N ++ +F ++E+Q Sbjct: 361 IRRSKYELKKCKNRVHILMGFFKILDHLDLMIQLIKKSNNHSDACTTLIKKFKISEDQSK 420 Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489 +IL++RL+SL LE ++K E D L+ + E ++L + I E+ ++K+ + S Sbjct: 421 SILDMRLQSLTSLEVDKLKKEYDELVKKIEFFQNVLVQHSVRTKIIKEELLDIKKKYQDS 480 Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSH------SVDLS 541 RRT ++ + + +IE E + + IS+ G+I+ SL + V Sbjct: 481 -----RRT---QIDYSGNKVHIEDLIENEQVVLTISHAGYIKRTSLSEYKRQGRGGVGNR 532 Query: 542 ALHFKEGDSLKIALHAHTTDRILLLSTDGKA-----YTLPAGNLLSGRGHGEAIQLLIDL 596 +E D K L A +L + GK Y +P G+ +S G AIQ +I L Sbjct: 533 GATARESDFFKHLLIATNHQFLLFFTEKGKCFWLRVYEIPEGSKIS---KGRAIQNIIHL 589 Query: 597 NHNQDIVTAFV 607 + D V A++ Sbjct: 590 QQD-DKVNAYI 599 >gi|295691868|ref|YP_003600478.1| DNA gyrase, a subunit [Lactobacillus crispatus ST1] gi|295029974|emb|CBL49453.1| DNA gyrase, A subunit [Lactobacillus crispatus ST1] Length = 826 Score = 377 bits (969), Expect = e-102, Method: Compositional matrix adjust. Identities = 219/621 (35%), Positives = 356/621 (57%), Gaps = 38/621 (6%) Query: 8 NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67 + N + +K V L + +L YA+S I RA+PD+RDG KPV RRI++ MSE+G+ Sbjct: 2 DENQTQDHRIKNVDLTSMMRSSFLDYAMSVIVARALPDVRDGLKPVQRRILYGMSELGVT 61 Query: 68 FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAA 127 +KKSARIVGEV+GK HPHGD S+Y ++ +AQ F RY L+ G GNFG++DGD A Sbjct: 62 PDKPYKKSARIVGEVMGKFHPHGDSSIYLAMAHMAQDFSYRYMLVDGHGNFGSVDGDEPA 121 Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187 A RYTEARM+++A +L+ ++++ +D++ Y++ ++EPVV P++ PNLL NG +GIAVGM Sbjct: 122 AMRYTEARMSKIAVEMLRDINKNTIDWQRNYDDTENEPVVLPARIPNLLVNGANGIAVGM 181 Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247 T+IP HN+ E+ L+ NP+ + + L++ I GPDFPT G I+ R I +Y G+ Sbjct: 182 TTNIPPHNLTEVISGLHMLMKNPDATTKDLMKVIPGPDFPT-GGIIMGRGGIYRAYESGK 240 Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307 G VRA+ +E G I+V+EIP+ V K+ L++KIA+L K I + +RDES + Sbjct: 241 GNIVVRAKTNIETEKSGRERIIVSEIPFMVNKAELVKKIADLAREKTIDGITGVRDESDQ 300 Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367 + R +++ ++F + M+ F +NM + G P + L +L+ +L H Sbjct: 301 TGMRITIDIRRDASASVVLNNLFKQTQMQANFGMNMVAIVDG-APHFLTLKQMLQYYLDH 359 Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLT 424 + +V+ RR+ F + + R IL+GL IA NIDEI+ IIRN D K ++SRF L Sbjct: 360 QEDVVTRRTRFELAKAEARAHILEGLRIALDNIDEIVHIIRNSQSSDIAKATLISRFGLD 419 Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484 + Q AIL++RL L LE ++++E L A+ +L ++ I E+ ++++ Sbjct: 420 DKQSQAILDMRLVRLTGLERDKVEAEYKELQAKIADYKDILAKPERIDQIIYDELLDIQK 479 Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSLKSHSVD---- 539 F +RRT E+ ++ +++ + +IEK+ I + +++ G+I+ + Sbjct: 480 RFGD-----KRRT---EIGASEVVSIEDEDLIEKQNILLTVTHNGYIKRMPIQEFKTQNR 531 Query: 540 ----LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNL 580 + + ++GD ++ +++ T D +L + GK Y+ LP NL Sbjct: 532 GGKGIKGMGVQDGDFIEHLIYSSTHDLLLFFTNAGKVYSKKAYEIPEYGRMAKGLPVVNL 591 Query: 581 LSGRGHGEAIQLLIDLNHNQD 601 L GE +Q +I++ N D Sbjct: 592 LQLE-KGEKVQTVINIPENAD 611 Score = 38.9 bits (89), Expect = 3.5, Method: Compositional matrix adjust. Identities = 45/161 (27%), Positives = 68/161 (42%), Gaps = 6/161 (3%) Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHN 599 L AL K+GD L L IL+ + G A T + N + G A I+L N Sbjct: 640 LIALTLKDGDELSNVLTTDGKQNILIGTHLGYAVTF-SENDVRAMGRTAAGVRGINLREN 698 Query: 600 QDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT-- 657 +V + V + ++LV+S KG +E R GK + EK + VT Sbjct: 699 DYVVGSGVLGADDQVLVISEKGYGKRTPAAEYPVKGRGGKGIKTANITEKNGPLAGVTII 758 Query: 658 --GDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDG 695 + V V+ + ++ F I+ + + R GVRL DG Sbjct: 759 NSNNDVMVITTDGIMIRFKIEDVSQTGRSTMGVRLIKVNDG 799 >gi|304310666|ref|YP_003810264.1| DNA gyrase (topoisomerase II) A subunit [gamma proteobacterium HdN1] gi|301796399|emb|CBL44607.1| DNA gyrase (topoisomerase II) A subunit [gamma proteobacterium HdN1] Length = 900 Score = 377 bits (969), Expect = e-102, Method: Compositional matrix adjust. Identities = 279/799 (34%), Positives = 435/799 (54%), Gaps = 88/799 (11%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 +++ L++ YL YA+S I RA+PD+RDG KPVHRR++ AM+E+ + +KKSARIV Sbjct: 11 INIEDELKKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELSNHWNKPYKKSARIV 70 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGD +VYD++VR+AQ F RY L+ GQGNFG+IDGD+ AA RYTE RM ++ Sbjct: 71 GDVIGKYHPHGDTAVYDTIVRMAQYFSLRYMLVDGQGNFGSIDGDNPAAMRYTEVRMAKI 130 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A +L +D++ VDF Y+ + P V P+K PNLL NG+SGIAVGMAT+IP HN+ E+ Sbjct: 131 AHELLADLDKETVDFVPNYDGSEQMPSVLPTKVPNLLVNGSSGIAVGMATNIPPHNLGEV 190 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 +A A +D+ EI+IE L+++I GPDFPT GII R I+E+YR GRG R+RAR VE Sbjct: 191 IDACFAFMDDSEITIEGLMKHIQGPDFPTYGII-NGRAGIIEAYRTGRGRIRIRARATVE 249 Query: 260 -EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318 + G I+VTEIPYQ+ K+RLIE+IAEL+ K I + ++RDES +++RIV+ + R Sbjct: 250 RDAKTGRDSIIVTEIPYQLNKARLIERIAELVKEKLIEGITELRDESDKNIRIVIEVR-R 308 Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378 + D+++ +++ + ME+ F +NM L G+ P+++ L G+++ ++ HR+EV+ RR+ + Sbjct: 309 GENADVVLNNLYSQTQMESVFGINMVALVDGQ-PRLLNLRGVIEAFVRHRQEVVTRRTVY 367 Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED--------------KPKPV--MVSR-- 420 ++ R IL+GL +A NID +I +I++ +P V M+ R Sbjct: 368 ELRKARERAHILEGLAVALANIDPVIELIKSSASRAEAEERLLAQGWQPGNVIAMLERAG 427 Query: 421 --------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEK 460 + L++ Q IL +RL L LE ++ E L + Sbjct: 428 EAHACRPEGLPAHYGLRNGLYYLSDVQAREILEMRLHRLTGLETEKLIQEYQEKLEIIRE 487 Query: 461 IDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI 520 + ++L S ++ I E+ ++E F+ + R T S+ D + +I +E + Sbjct: 488 LLAILASRERLMQVIRDELTAIREGFADA------RKTEIVASQLD--INDEDLIPEETV 539 Query: 521 TVVISNRGWIRS--LKSHSVDL------SALHFKEGDSLKIALHAHTTDRILLLSTDGKA 572 V +SN G+ ++ L + +A KE D ++ L T D IL ++ GK Sbjct: 540 VVTLSNDGYAKTQPLDHYQAQHRGGRGKAAAQVKEEDCIEHLLVVSTHDTILCFTSAGKV 599 Query: 573 YTLPAGNL-LSGR-GHGEAIQLLIDLNHNQDIVTAFV----YDSTCKLLVVSSKGNAFIV 626 + L + +GR G I L+ L N+ I TA + YD + + +S G V Sbjct: 600 FWLKVYQIPQAGRQAKGRPIVNLLSLGENEKI-TAILPLRGYDGDRFVFMATSNGTVKKV 658 Query: 627 EESEIIANTRKGKTFLKVSSEEKMKLV-VKVTGDH--VAVVGENRKLLIFSIDQIPEMSR 683 E +G L++ EE +LV V +T H + ++ K + F +++ M R Sbjct: 659 ALQEFSRPRSQGLIALEL--EENNRLVGVAITEGHQDIMLLSSEGKAVRFDENEVRAMGR 716 Query: 684 -GKGVR-LQSYKDGGI-------SDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRG 734 +GVR + +D + D CE + G+ SE G RG Sbjct: 717 TARGVRGMNLPEDAAVIALIVPDPDAQILTACE-----NGFGKRTLVSEFPTKG----RG 767 Query: 735 GVGSLVPKGFPRSGKFLSS 753 G G + + R+GK + + Sbjct: 768 GKGMIAIRTSERNGKLMGA 786 >gi|225386348|ref|ZP_03756112.1| hypothetical protein CLOSTASPAR_00092 [Clostridium asparagiforme DSM 15981] gi|225047530|gb|EEG57776.1| hypothetical protein CLOSTASPAR_00092 [Clostridium asparagiforme DSM 15981] Length = 850 Score = 377 bits (969), Expect = e-102, Method: Compositional matrix adjust. Identities = 226/631 (35%), Positives = 365/631 (57%), Gaps = 35/631 (5%) Query: 13 VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72 V + V V L+ +E+ Y+ YA+S I RA+PD+RDG KPV RR++ +M E+ Sbjct: 5 VFDKVHEVDLKKTMEQSYIDYAMSVISARALPDVRDGLKPVQRRVLFSMIELNNGPDKPH 64 Query: 73 KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132 +K ARIVG+ +GK HPHGD S+Y +LV +AQ + RYPL+ G GNFG++DGD AAA RYT Sbjct: 65 RKCARIVGDTMGKYHPHGDSSIYGALVNMAQEWSTRYPLVDGHGNFGSVDGDGAAAMRYT 124 Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192 EAR+++++ +L +++D V+F ++E + EPVV PS++PNLL NG SGIAVGMAT+IP Sbjct: 125 EARLSKISMEMLADINKDTVNFVPNFDETEREPVVLPSRYPNLLVNGASGIAVGMATNIP 184 Query: 193 SHNVQEICEAALALIDN-----PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247 HN++E+ A + +IDN E ++E+L+E + GPDFPTG I+ R +I ++YR GR Sbjct: 185 PHNLREVVGAVVKMIDNRVQEDRETTMEELMEIVKGPDFPTGATIL-GRRAIEQAYRTGR 243 Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307 +VRA +E + G I+V+E+PY V K+RLIEKIA+L+ K+I + I DES Sbjct: 244 SKIKVRAVTNIETMANGKSRIIVSELPYMVNKARLIEKIADLVKEKKIDGITYIGDESNR 303 Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367 + + R ++ ++++ + + ++ F + M L + P+V+ L +L +L H Sbjct: 304 EGMRINIELRRDVNANVILNQLLKHTQLQDTFGVIMLAL-VDSQPKVLNLHQMLDYYLKH 362 Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLT 424 + +V+ RR+ + + + R IL+GLLIA +IDE+I+IIR N + K ++ RF L+ Sbjct: 363 QEDVVRRRTQYDLNKAEERAHILEGLLIALDHIDEVISIIRGSANVSEAKRLLTERFGLS 422 Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484 + Q AI+++RLR+L LE +I++E L A ++ ++L K+ I EI + + Sbjct: 423 DAQAQAIVDMRLRALTGLEREKIENEYKELQARISELKAILADEKKLLTVIKDEITVIAD 482 Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSH 536 + RRT + D +++ +I E + +++ G+I RS Sbjct: 483 KYGDD-----RRTA---IGYDDDMSMED-LIPDEDTVIAMTHLGYIKRMDVDNFRSQNRG 533 Query: 537 SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEAIQLLI 594 + + E D ++ L ++ + G+ Y L A + +GR G AI L+ Sbjct: 534 GKGIKGMQTIEEDYIEDLLMTTNHHYVMCFTNTGRVYRLKAYEIPEAGRTARGTAIVNLL 593 Query: 595 DLNHNQDIVTAFV----YDSTCKLLVVSSKG 621 L + I TA + Y+ K L +++KG Sbjct: 594 QLQPEEKI-TAIIPMREYNED-KYLFMATKG 622 >gi|295101858|emb|CBK99403.1| DNA gyrase subunit A [Faecalibacterium prausnitzii L2-6] Length = 859 Score = 377 bits (969), Expect = e-102, Method: Compositional matrix adjust. Identities = 245/737 (33%), Positives = 389/737 (52%), Gaps = 40/737 (5%) Query: 26 LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85 +E +L Y++S I RA+PD+RDG KPVHRRI++ M E G D ++KSA VG V+G Sbjct: 24 IETAFLDYSMSVIVARALPDVRDGLKPVHRRILYTMHERGNDPSHPYRKSADTVGAVLGS 83 Query: 86 LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145 HPHGD SVYD++VRLAQ F RYPL+ GQGNFG++DGD AAYRYTEARM+++A +L Sbjct: 84 YHPHGDASVYDAMVRLAQDFSLRYPLVDGQGNFGSVDGDPPAAYRYTEARMSRMAVEMLT 143 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 +D+D +++ ++E EP V P +FPNLL NG+ GIAVGMAT+IP HN+ E+ + +A Sbjct: 144 DIDKDTINWDPNFDETKKEPSVLPCRFPNLLVNGSQGIAVGMATNIPPHNLSEVIDGCVA 203 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265 I++P+I + L+E+I GPDFPT GII+ R I +Y GRG +R R +EE G Sbjct: 204 YIEDPDIDLPGLMEHIKGPDFPTAGIIM-GRSGIRAAYATGRGKITLRGRATIEETKNGR 262 Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325 I++TEIPY V K+RLIE +AEL+ KRI + + DE+ ++ + + ++ Sbjct: 263 TQIIITEIPYMVNKARLIENMAELVKDKRIEGITGLNDETNRKGMRIVVDIRKDANAQVI 322 Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385 + ++ + ++ + M + +VP+VM L ++++++ + EV+ RR+ + ++ Sbjct: 323 LNQLYQYTQLQDTVGVIMLAIDH-KVPKVMTLKQMIQKYVEFQDEVVRRRTQYDLKKAKE 381 Query: 386 RVEILKGLLIAYLNIDEIIAIIR----NEDKPKPVMVSRFSLTENQVDAILNLRLRSLRK 441 R IL+GL A +DE+IA IR + K ++ +F + Q DAI+ L+L L Sbjct: 382 RAHILEGLKKATDIVDELIATIRACKGGMAEAKAAIMEQFGFDDPQADAIVKLQLGRLAG 441 Query: 442 LEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCE 501 LE +I+ EL L A+ E + +L + + + E+ ++K+ F RRT E Sbjct: 442 LEILKIEEELSGLQAKIEDWEDILANDARVLEIVKNELLDMKKRFGDE-----RRT---E 493 Query: 502 VSRADKATLQQAMIEKEPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKI 553 + + +I +E ++ G+I+ + K +S + KE D ++ Sbjct: 494 IQSVTGEVDIEDLIAEEQCVYTLTEAGYIKRQLKATYQAQKRGGRGISGMTRKEEDIVQE 553 Query: 554 ALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608 T D +L ++ G K YT+ G+ S G I L+ L + + Y Sbjct: 554 MFVGSTHDYVLFVTDKGRLFRIKGYTIAEGSRTS---KGSNIINLLQLAEGEKVTNMLCY 610 Query: 609 ----DSTCKLLVVSSKGNAFIVEESEIIANTRK-GKTFLKVSSEEKMKLVVKVTGDHVAV 663 D+ + + +K E AN RK G + ++ + + TG+ + + Sbjct: 611 PKDEDNKGGFVTMVTKQGLIKRTPLEQYANIRKTGLIGIALNEGDALAWTRLTTGNDMLI 670 Query: 664 VG-ENRKLLIFS-IDQIPEMSRGKGVRLQSYKDGGISDVICFKIC-EGLTWIDSAGRSYN 720 V N + + F+ D P G GVR +G +V+ IC EG T + Sbjct: 671 VATRNGQAIRFNEADARPMGRSGHGVRAIKLAEG--DEVVGVCICREGGTVLTVTENGKG 728 Query: 721 RSENDLLGWLGKRGGVG 737 R + + RGG G Sbjct: 729 RRSDIDTYRITARGGKG 745 >gi|328885558|emb|CCA58797.1| Topoisomerase IV subunit A [Streptomyces venezuelae ATCC 10712] Length = 819 Score = 377 bits (969), Expect = e-102, Method: Compositional matrix adjust. Identities = 212/523 (40%), Positives = 319/523 (60%), Gaps = 15/523 (2%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 EE + + + ++ +L YA S I RA+PD RDG KPV RRI++ M EMGL F Sbjct: 16 EERILDIDVVDEMQGSFLEYAYSVIYSRALPDARDGMKPVQRRIVYQMGEMGLRPDRGFV 75 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYT 132 K AR+VGEV+GKLHPHGD S+YD++VR+AQPF R PL+ G GNFG++ + D AA RYT Sbjct: 76 KCARVVGEVMGKLHPHGDASIYDAMVRMAQPFSMRLPLVDGHGNFGSLGNDDPPAAMRYT 135 Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192 E+RM A L+ + +DED VDF Y+ ++ EPV P+ +PNLL NG SGIAVGMAT++P Sbjct: 136 ESRMAPAALLMTESIDEDTVDFAPNYDGQEQEPVALPAAYPNLLVNGASGIAVGMATNMP 195 Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252 HN+ E+ AA LI +P +E L+ ++ GPD PTGG IV I ++Y GRG F++ Sbjct: 196 PHNLGEVIAAARHLIRHPHADLETLMRFVPGPDLPTGGRIV-GLSGIKDAYESGRGSFKI 254 Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD--ESAEDVR 310 RA VE V IVVTE+P+ V ++I KI +L+ +K++ + D++D + +R Sbjct: 255 RATTSVETVTARRKGIVVTELPFTVGPEKVISKIKDLVGSKKLQGIADVKDLTDRNHGLR 314 Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370 +V+ KN P+ ++E ++ L+ ME F +N L G+ P + L +L+ +L HR E Sbjct: 315 LVIEIKN-GFVPEAVLEQLYKLTPMEESFGINNVALVDGQ-PLTLGLKELLEVYLDHRFE 372 Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQ 427 V+ RRS FR R+ +++GLL+A L+IDE+I +IR N + K ++ RFSL+E Q Sbjct: 373 VVRRRSEFRRTKKRDRLHLVEGLLVALLDIDEVIRLIRESENSAQAKERLMERFSLSEIQ 432 Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487 IL+ LR L K + ++++E + L E +++ +L S + ++ E+ V + F Sbjct: 433 TQYILDTPLRRLTKFDRIELETEQNRLNGEIDELTGILESDAELRKLVSAELAAVAKKF- 491 Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI 530 +TD RRT E + A A + + +P V++S+ G + Sbjct: 492 -ATD---RRTVLLESAGAPVAAVSLE-VADDPCRVLLSSTGLL 529 >gi|113477602|ref|YP_723663.1| DNA gyrase subunit A [Trichodesmium erythraeum IMS101] gi|110168650|gb|ABG53190.1| DNA gyrase subunit A [Trichodesmium erythraeum IMS101] Length = 885 Score = 377 bits (968), Expect = e-102, Method: Compositional matrix adjust. Identities = 243/686 (35%), Positives = 374/686 (54%), Gaps = 37/686 (5%) Query: 11 TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70 T E + LR + + YL YA+S I RA+PD RDG KPVHRRI++AM E+GL Sbjct: 2 TTSESRIVPTDLRNEMSQSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMHELGLTPDR 61 Query: 71 AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130 F+K AR+VGEV+GK HPHGD +VYD+LVR+AQ F R PLI G GNFG++D D AA R Sbjct: 62 PFRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRSPLIQGHGNFGSVDNDPPAAMR 121 Query: 131 YTEARM-TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189 YTE R+ + +L+ +D + VDF D ++ EP+V PS+ P L NG+SGIAVGMAT Sbjct: 122 YTECRLQVLTCDAMLRDIDSETVDFADNFDGSQQEPLVLPSRVPQLFLNGSSGIAVGMAT 181 Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249 +IP HN+ E+ + +ALI N EI+ +L+++I GPDFPTG I+ + I ++Y LGRG Sbjct: 182 NIPPHNLGELIDGLVALIHNSEITENELIQHIPGPDFPTGAQIL-GKSGIRDAYTLGRGS 240 Query: 250 FRVRARWCVEEV---GR-GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305 +R +E + GR I+VTE+PYQ K+ LIEKIAEL+ K+I + DIRDES Sbjct: 241 ITMRGVATIETIEQRGRPDKEAIIVTELPYQTNKAALIEKIAELVNDKKIEGISDIRDES 300 Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365 + ++ R P +++ +++ + ++ F N+ L + PQ++ L L+ +L Sbjct: 301 DRNGMRIVIELKRDAYPRVVLNNLYKQTPLQANFGANVLAL-VNSEPQLLTLKKYLEVFL 359 Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN-EDKP--KPVMVSRFS 422 R E + RR+ + ++ + R +L+GLLIA N+DEII +IRN D P K ++ + Sbjct: 360 EFRVETITRRTEYELRKAEERDHLLQGLLIALDNLDEIIQLIRNAADTPNAKKELIENYG 419 Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482 L+E Q DAIL ++LR L LE +I+ E + LL + + +L K++ E + Sbjct: 420 LSEVQSDAILQMQLRRLTALEAQKIQKEHEELLLKIADLQDIL--AKRERILEIIETEAI 477 Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL-- 540 + +T RRT + A+ +I E ++++ +G+I+ + +S + Sbjct: 478 EIKERHATP---RRTV---IELAEGELDDTDLIANEKAIILLTEQGYIKRMPVNSFEAQS 531 Query: 541 ------SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQL 592 S KE D ++ L + D IL S G Y L A + G G I Sbjct: 532 RATRGKSGTKMKEDDVVEHFLSCYDHDSILFFSQRGVVYCLNAYQIPIGSRVARGVPIVQ 591 Query: 593 LIDLNHNQDI-----VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR-KGKTFLKVSS 646 ++ + ++ + V+ F D K LV+ +KG AN R G + + Sbjct: 592 MLPIPRDEKVTSIVAVSEFTDD---KYLVMLTKGGYIKKTSLSAFANIRSNGLIAISLGE 648 Query: 647 EEKMKLVVKVTGDHVAVVGENRKLLI 672 + ++ V + D ++G + + I Sbjct: 649 GDSLRWVRRAKVDDSLIIGSSYGMAI 674 >gi|261365069|ref|ZP_05977952.1| DNA gyrase, A subunit [Neisseria mucosa ATCC 25996] gi|288566489|gb|EFC88049.1| DNA gyrase, A subunit [Neisseria mucosa ATCC 25996] Length = 921 Score = 377 bits (968), Expect = e-102, Method: Compositional matrix adjust. Identities = 233/630 (36%), Positives = 355/630 (56%), Gaps = 69/630 (10%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 VSL + + YL YA+S I RA+PD+RDG KPVHRR+++AM E+ ++ AA+KKSARIV Sbjct: 19 VSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIV 78 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGD +VYD++VR+AQ F RY LI GQGNFG++DGD AAA RYTE RM ++ Sbjct: 79 GDVIGKYHPHGDSAVYDTIVRMAQDFSMRYVLIDGQGNFGSVDGDGAAAMRYTEIRMAKI 138 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A +L ++E+ V+F Y+ + EP+V P++FP LL NG+SGIAVGMAT+IP HN+ + Sbjct: 139 AHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPALLVNGSSGIAVGMATNIPPHNLTDT 198 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 A L L+D PE I++L+ + PDFPTG I + E Y+ GRG +R + +E Sbjct: 199 VNACLRLLDEPETEIDELINILQAPDFPTGATIY-GLSGVREGYKTGRGRVVMRGKTHIE 257 Query: 260 EVGRGS--WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317 +G+ I++ EIPYQV K++L+EKI EL+ K + + D+RDES + V+ Sbjct: 258 PIGKNGEREAIIIDEIPYQVNKAKLVEKIGELVREKTLEGVSDLRDESDKSGMRVVIELK 317 Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377 R+ + ++++ ++ L+ ++ F +NM L G+ P+++ L IL E+L HRREV+ RR+ Sbjct: 318 RNENAEVVLNQLYKLTQLQDSFGINMVALVDGQ-PRLLNLKQILSEFLRHRREVVTRRTL 376 Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDKPKPV---------------MVSR- 420 FR++ I +G +A NIDE+I +I+ + D P+ M+SR Sbjct: 377 FRLKKARHEGHIAEGKAVALSNIDEMIRLIKESADAPEAKEKLLSRAWRSGLVEDMLSRT 436 Query: 421 ----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458 + L+E Q DAIL + LR+L L++ +I + N++A Sbjct: 437 DLDLRMARPEGLPANLGLQEQGYYLSEIQADAILRMSLRNLTGLDQEEIVGDYKNIMA-- 494 Query: 459 EKIDSLLN--SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE 516 KI L+ + ++ QI IRE E+ T+ G R + D A + +I Sbjct: 495 -KIIDFLDILAKPERITQI---IRE--ELEETKTNFGDERRSEINPFGGDIA--DEDLIP 546 Query: 517 KEPITVVISNRGWIRSLKSHSVDL--------SALHFKEGDSLKIALHAHTTDRILLLST 568 + + V +++ G+I++ + A K+ D ++ A+T D ++ + Sbjct: 547 QREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDYLMCFTN 606 Query: 569 DGKA-----YTLPAGNLLS-GRGHGEAIQL 592 GK Y LP G S GR IQL Sbjct: 607 LGKCHWIKVYKLPEGGRNSRGRPINNVIQL 636 >gi|257094472|ref|YP_003168113.1| DNA gyrase subunit A [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257046996|gb|ACV36184.1| DNA gyrase, A subunit [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 872 Score = 377 bits (968), Expect = e-102, Method: Compositional matrix adjust. Identities = 252/729 (34%), Positives = 385/729 (52%), Gaps = 76/729 (10%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 VSL + YL YA+S I RA+PD RDG KPVHRR++ AM E+ D+ +KKSARIV Sbjct: 11 VSLEDEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHELSNDWNKPYKKSARIV 70 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGD +VYD++VR+AQ F RY L+ GQGNFG++DGD+AAA RYTE RM ++ Sbjct: 71 GDVIGKYHPHGDTAVYDTIVRMAQNFSLRYMLVDGQGNFGSVDGDNAAAMRYTEVRMARI 130 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 +L +D++ VDF Y+ + EP+V P++ PNLL NG++GIAVGMAT+IP HN+ EI Sbjct: 131 GHELLADIDKETVDFGPNYDGSEEEPLVMPARIPNLLINGSAGIAVGMATNIPPHNLGEI 190 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 +A LAL++N E++I++L++ + GPDFPT GII + E YR GRG +R R E Sbjct: 191 IDACLALLNNAEVTIDELIDLVPGPDFPTAGIIY-GVAGVREGYRTGRGRVVMRGRTHFE 249 Query: 260 EVGRGS--WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317 ++ +G+ I++ E+PYQV K L+EKI EL+ KRI + D+RDES + V+ Sbjct: 250 DMDKGNNRQAIIIDELPYQVNKRTLLEKIGELVNEKRIEGISDLRDESDKSGMRVVIELK 309 Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377 R ++++ ++ + ++ F +NM L G+ P+++ L +L+ +L HRREVL RR+ Sbjct: 310 RGEVAEVVLNCLYKQTQLQDTFGMNMVALVDGQ-PRLLNLKQMLECFLRHRREVLTRRTV 368 Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP------------------------ 413 F ++ R I +GL +A N+DEIIA+I+ P Sbjct: 369 FELRKARERAHIQEGLAVALDNVDEIIALIKASPTPADARRGLMSRLWTSPTVAEMLQRA 428 Query: 414 -----KP--------VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEK 460 +P + S + L+E Q AIL LRL+ L LE +I ++ LLA Sbjct: 429 ALDATRPQGLGLEYGLSASGYLLSEAQAQAILELRLQRLTGLERDKIVADYGELLARIAD 488 Query: 461 IDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI 520 + +L ++ I E+ ++ F G +R + +S D + I + Sbjct: 489 LMDILARPERITEMIVEELTAIRAQF------GDKRRSEIVISTQDLGI--EDFITPVDM 540 Query: 521 TVVISNRGWIRS--LKSHSVDLSALHFKEGDSLKI------ALHAHTTDRILLLSTDG-- 570 V +S+ G+I+S L + K+ ++K A+T D IL + G Sbjct: 541 VVTLSHTGYIKSQPLADYRAQRRGGRGKQAAAMKTDDFVDHLFVANTHDFILCFTNRGRV 600 Query: 571 ---KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI-----VTAFVYDSTCKLLVVSSKGN 622 K Y +P G S G+ I L + I V F D + + +++G Sbjct: 601 YWLKVYEVPQGTRTS---RGKPIVNLFPFEEGEKISAILPVKEFTDDRY--IFMCTAQGT 655 Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--DHVAVVGENRKLLIFSIDQIPE 680 S+ +N RK +E + + ++T V +V + K + F + + Sbjct: 656 VKKTPLSD-FSNPRKAGIIAVALDDEDVLIGAEITNGTQDVVLVSDAGKAVWFDEEDVRP 714 Query: 681 MSR-GKGVR 688 M R +GVR Sbjct: 715 MGRTARGVR 723 >gi|302383735|ref|YP_003819558.1| DNA gyrase subunit alpha [Brevundimonas subvibrioides ATCC 15264] gi|302194363|gb|ADL01935.1| DNA gyrase, A subunit [Brevundimonas subvibrioides ATCC 15264] Length = 933 Score = 377 bits (968), Expect = e-102, Method: Compositional matrix adjust. Identities = 255/729 (34%), Positives = 384/729 (52%), Gaps = 65/729 (8%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 ++ +S+ L+ YL YA+S I RA+PD RDG KPVHRRI+++M ++ + ++ K Sbjct: 30 DIAVISIEDELKRSYLDYAMSVIVSRALPDARDGLKPVHRRILYSMHDLNMTPERSYSKC 89 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 AR+VG+V+G+ HPHGD SVY +LVR+AQPF LI GQGNFG++DGD A+ RYTEAR Sbjct: 90 ARVVGDVLGRFHPHGDASVYMALVRMAQPFSMGLMLIDGQGNFGSVDGDMPASMRYTEAR 149 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 M A +L +D+D VDF+ Y+E++ EPVV P++ PNLL NG GIAVGMAT+IP HN Sbjct: 150 MAPAASALLTDIDKDTVDFQPNYDEKELEPVVLPARIPNLLVNGAGGIAVGMATNIPPHN 209 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 + EI +A +AL+D+PE+S + LL+ + GPDFPTGG I+ R + + R GRG VR Sbjct: 210 LGEIVDACIALLDDPEVSDDALLDIVPGPDFPTGGEIL-GRTAPRNALRDGRGSVVVRGV 268 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE-DVRIVLF 314 VE + + IVVTE+P+QV K LIE+IAE++ KR+ + D+RDES +RIV+ Sbjct: 269 ASVETIRKDREAIVVTELPFQVNKQTLIERIAEMVREKRLEGISDVRDESDRAGMRIVIE 328 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K R D+++ ++ + M++ F +NM L+ GR P+ M L +L+ +L R EV+ R Sbjct: 329 LK-RDASGDVILNQLWRYTAMQSSFGVNMLALNHGR-PEQMGLRKLLEVFLDFREEVVVR 386 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK-----------PV--MVS-- 419 R F + R +L GL +A NIDE+I IIR+ P PV M++ Sbjct: 387 RVKFELAKARDRGHVLVGLAVAVANIDEVIHIIRSSADPAEARERLQAKAWPVGDMIALV 446 Query: 420 --------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLL 465 LT+ Q AIL L L L L I E L + ++L Sbjct: 447 ELIADPRSVLIDGNSLKLTDEQARAILGLTLSRLTGLGRDDIFGEARGLADTIQGHLTIL 506 Query: 466 NSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVIS 525 + K I ++ +V+ F+ RRT E D + +I +E + V ++ Sbjct: 507 SDRKNILAIIREDLLDVRNQFAVP-----RRTLIGE---GDFELEDEDLIPREDMVVTVT 558 Query: 526 NRGWIRSLKSHSVDL--------SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPA 577 + G+++ + ++ S + K+ D++ A T +L +T+GKAY L Sbjct: 559 HGGYVKRVALNAYRTQHRGGKGKSGMTMKDEDAITGVFSASTHTPVLFFATNGKAYKLKV 618 Query: 578 GNLLSG--RGHGEAIQLLIDLNHNQDI--VTAFVYDSTC----KLLVVSSKGNAFIVEES 629 L G G+A L+ + I V D T ++ + G+ + S Sbjct: 619 WRLPLGAPTSRGKAFVNLLPIEPGDSIMNVLPLPEDETTWGDYDIMFATRSGDVRRNKLS 678 Query: 630 EIIANTRKGKTFLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSRG---- 684 + R GK +K+ + M V T D V + + + F D + + +G Sbjct: 679 DFATVNRAGKIAMKLEDGDHMVGVALCTAEDDVLLTTAGGRAIRFKADDV-RVFKGRDST 737 Query: 685 --KGVRLQS 691 +GVRLQ Sbjct: 738 GVRGVRLQG 746 >gi|302566244|pdb|3NUH|A Chain A, A Domain Insertion In E. Coli Gyrb Adopts A Novel Fold That Plays A Critical Role In Gyrase Function Length = 525 Score = 377 bits (968), Expect = e-102, Method: Compositional matrix adjust. Identities = 216/522 (41%), Positives = 306/522 (58%), Gaps = 45/522 (8%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + V++ L+ YL YA S I RA+PD+RDG KPVHRR+++A + +G D+ A+KKSA Sbjct: 8 ITPVNIEEELKSSYLDYAXSVIVGRALPDVRDGLKPVHRRVLYAXNVLGNDWNKAYKKSA 67 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+VIGK HPHGD +VYD++VR AQPF RY L+ GQGNFG+IDGDSAAA RYTE R+ Sbjct: 68 RVVGDVIGKYHPHGDSAVYDTIVRXAQPFSLRYXLVDGQGNFGSIDGDSAAAXRYTEIRL 127 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 ++A + ++++ VDF D Y+ + P V P+K PNLL NG+SGIAVG AT+IP HN+ Sbjct: 128 AKIAHELXADLEKETVDFVDNYDGTEKIPDVXPTKIPNLLVNGSSGIAVGXATNIPPHNL 187 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ LA ID+ +ISIE L E+I GPDFPT II R I E+YR GRG +RAR Sbjct: 188 TEVINGCLAYIDDEDISIEGLXEHIPGPDFPTAAII-NGRRGIEEAYRTGRGKVYIRARA 246 Query: 257 CVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315 VE + G I+V EIPYQV K+RLIEKIAEL+ KR+ + +RDES +D ++ Sbjct: 247 EVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGXRIVIE 306 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 R ++++ +++ + ++ F +N L G+ P++ L I+ ++ HRREV+ RR Sbjct: 307 VKRDAVGEVVLNNLYSQTQLQVSFGINXVALHHGQ-PKIXNLKDIIAAFVRHRREVVTRR 365 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR------------ 420 + F ++ R IL+ L +A NID II +IR+ P K +V+ Sbjct: 366 TIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAXLE 425 Query: 421 ----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458 + LTE Q AIL+LRL+ L LE ++ E LL + Sbjct: 426 RAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQI 485 Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFC 500 ++ +L S + I E+ V+E F +RRT Sbjct: 486 AELLRILGSADRLXEVIREELELVREQFGD-----KRRTEIT 522 >gi|297833850|ref|XP_002884807.1| DNA gyrase subunit A family protein [Arabidopsis lyrata subsp. lyrata] gi|297330647|gb|EFH61066.1| DNA gyrase subunit A family protein [Arabidopsis lyrata subsp. lyrata] Length = 950 Score = 377 bits (968), Expect = e-102, Method: Compositional matrix adjust. Identities = 244/695 (35%), Positives = 390/695 (56%), Gaps = 44/695 (6%) Query: 28 ERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLH 87 E Y+AYALS + RA+PD+RDG KPVHRRI+ AM E+G+ +KK AR+VGEV+GK H Sbjct: 112 ESYMAYALSVLLGRALPDVRDGLKPVHRRILFAMHELGMSSKKPYKKCARVVGEVLGKFH 171 Query: 88 PHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE-LILQG 146 PHGD +VYDSLVR+AQ F R PLI G GNFG+ID D AA RYTE R+ +AE ++L Sbjct: 172 PHGDTAVYDSLVRMAQSFSLRCPLIQGHGNFGSIDADPPAAMRYTECRLDPLAEAVLLSD 231 Query: 147 VDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALAL 206 +D+D VDF ++ EP V P++ P LL NG SGIAVGMAT+IP HN+ E+ + AL Sbjct: 232 LDQDTVDFVANFDNSQKEPAVLPARLPALLLNGASGIAVGMATNIPPHNLGELVDVLCAL 291 Query: 207 IDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSW 266 I NPE ++++LLEY+ PDFPTGGII+ ++++YR GRG VR + VE + + Sbjct: 292 IHNPEATLQELLEYMPAPDFPTGGIIM-GNLGVLDAYRTGRGRVVVRGKAEVELLDPKTK 350 Query: 267 --CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDL 324 +++TEIPYQ K+ L++KIAEL+ K + + DIRDES + V+ R DP L Sbjct: 351 RNAVIITEIPYQTNKATLVQKIAELVENKTLEGISDIRDESDRNGMRVVIELKRGGDPAL 410 Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384 ++ +++ + +++ F NM + G P++M L +L+ ++ R V+ RR+ F++ Sbjct: 411 VLNNLYRHTALQSSFSCNMVGICDGE-PKLMGLKELLQAFIDFRCSVVERRARFKLSHAQ 469 Query: 385 RRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLTENQVDAILNLRLRSLRK 441 +R ++G+++ N+DE+I +I+N + S + L+E Q +AIL + LR L Sbjct: 470 QRKHNIEGIVVGLDNVDEVIKLIKNASSHSSASAALQSEYGLSEKQAEAILEITLRRLTT 529 Query: 442 LEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCE 501 LE ++ E +L + K++ LL++ I E E+K+ FS RR+ + Sbjct: 530 LERKKVTDESSSLTEQITKLEQLLSTRANILKLIEQEAIELKDRFSSP-----RRSMLED 584 Query: 502 VSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL--------SALHFKEGDSLKI 553 D + +I E + + IS +G+++ +K+ + +L S + D++ Sbjct: 585 SDSGDLEDID--VIPNEEMLMAISEKGYVKKMKADTFNLQHRGTIGKSVGKLRVDDAMSD 642 Query: 554 ALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI-----V 603 L H D +L S G +AY +P S G + ++ ++ + + V Sbjct: 643 FLVCHAHDHVLFFSDRGIVYSTRAYKIPE---CSRNAAGTPLVQILSMSEGERVTSIVPV 699 Query: 604 TAFVYDSTCKLLVVSSKGNAFIVEES-EIIANTRK-GKTFLKVSSEEKMKLVVKVTGDH- 660 + F D +L V N I + S ++ + R G ++++S +++K V + D Sbjct: 700 SEFAEDRYLLMLTV----NGCIKKVSLKLFSGIRSTGIIAIQLNSGDELKWVRCCSSDDL 755 Query: 661 VAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKD 694 VA+ +N +++ + D + +SR KGV K+ Sbjct: 756 VAMASQNGLVVLSTCDGVRTLSRNTKGVTAMRLKN 790 >gi|304321597|ref|YP_003855240.1| DNA gyrase subunit A [Parvularcula bermudensis HTCC2503] gi|303300499|gb|ADM10098.1| DNA gyrase subunit A [Parvularcula bermudensis HTCC2503] Length = 924 Score = 377 bits (968), Expect = e-102, Method: Compositional matrix adjust. Identities = 248/758 (32%), Positives = 391/758 (51%), Gaps = 64/758 (8%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 EE + +S+ +++ YL YA+S I RAIPD RDG KPVHRRI+ +M E G + Sbjct: 23 EEGIAPISITEEMQKSYLDYAMSVIVSRAIPDARDGLKPVHRRILWSMQEQGYTHDKRHR 82 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSA +VG+VIGK HPHGD +VYD+LVR+AQ F R PL+ GQGNFG+ID D AA RYTE Sbjct: 83 KSANVVGDVIGKYHPHGDTAVYDALVRMAQHFSMRLPLLDGQGNFGSIDNDPPAAMRYTE 142 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 RM AE +L +D+D VDF +TY+ E EP V P++FPNLL NG GIAVGMAT+IP Sbjct: 143 VRMAAPAEALLADIDKDTVDFHETYDGERQEPGVLPARFPNLLVNGAGGIAVGMATNIPP 202 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ EI +A + LID P +S E+LL + GPDFPTG I+ + ++ GRG +R Sbjct: 203 HNLGEIIDATVRLIDEPHVSDEELLSIVPGPDFPTGASIM-GQSGARQALLTGRGSVVMR 261 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIV 312 A VEEV + + I+V++IP+QV K+ ++E+IA L+ K++ + D+RDES +R+V Sbjct: 262 ATTAVEEVRKDRFAIIVSDIPFQVNKAAMVERIAGLVREKKLEGIADLRDESDRHGIRVV 321 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 + K R + ++++ +++ S ++T F N+ L+ GR P+ M L +LK ++ R EV+ Sbjct: 322 IELK-RDANAEVVLNNLYKQSPLQTSFAYNLLALNRGR-PEQMTLRTVLKSFVDFREEVV 379 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR--------- 420 RR+ + R +L GL I+ NIDE++ +IR P + ++ R Sbjct: 380 TRRTKHLLMKARDRAHVLVGLAISVANIDEVVRLIREAPNPAAAREALMGRNWPAKDLAS 439 Query: 421 -----------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDS 463 L+E Q AIL+LRL+ L L +I EL +L + Sbjct: 440 LVALVADPRHSLQEDGSLRLSETQARAILDLRLQRLTALGRDEIGDELQSLADKIADYLQ 499 Query: 464 LLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVV 523 +L + I E+ +V+E F+ R+T F + + + +I +E + V Sbjct: 500 ILRDRDRVLTIIKDELADVRERFATP-----RKTQFIDAIEME----DEDLIAREDMVVT 550 Query: 524 ISNRGWIR--SLKSHSVD------LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575 +S+ G+++ SL ++ S + K+ D + +T +L + G AY L Sbjct: 551 VSHAGYVKRTSLDTYRAQRRGGKGRSGMAMKDDDFISQLFVGNTHTPLLFFTDRGMAYKL 610 Query: 576 PAGNLLSG--RGHGEAIQLLIDLNHNQDIVTAFVYD------STCKLLVVSSKGNAFIVE 627 L G G+A L+ L+ + + + ++ + GN + Sbjct: 611 KLWRLPEGGPTSRGKAFINLLPLDQGERVTNILPLPDDEAQWADMDIVFATRSGNVRRNK 670 Query: 628 ESEIIANTRKGKTFLKVSSEEKMKLV-VKVTGDHVAVVGENRKLLIFSIDQI----PEMS 682 S+ + GK +K+ + + V + + + + N + F +D + S Sbjct: 671 LSDFTNVNKAGKIAMKLDEGDALVGVGIARESEDILLTTRNGMTIRFPVDAVRVFSGRTS 730 Query: 683 RG-KGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSY 719 G +G+R + + G V+ I L ++Y Sbjct: 731 TGVRGIRFKPNDEFGEDGVMSMAILRHLDVSSEEAKAY 768 >gi|218245437|ref|YP_002370808.1| DNA gyrase subunit A [Cyanothece sp. PCC 8801] gi|257058473|ref|YP_003136361.1| DNA gyrase subunit A [Cyanothece sp. PCC 8802] gi|218165915|gb|ACK64652.1| DNA gyrase, A subunit [Cyanothece sp. PCC 8801] gi|256588639|gb|ACU99525.1| DNA gyrase, A subunit [Cyanothece sp. PCC 8802] Length = 857 Score = 377 bits (968), Expect = e-102, Method: Compositional matrix adjust. Identities = 222/583 (38%), Positives = 333/583 (57%), Gaps = 26/583 (4%) Query: 11 TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70 T ++ + L + YL YA+S I RA+PD RDG KPVHRRI++AM E+GL Sbjct: 2 TFPQDRIIPTDLSNEMSHSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTPDR 61 Query: 71 AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130 F+K AR+VGEV+GK HPHGD +VYD+LVR+AQ F R PLI G GNFG++D D AA R Sbjct: 62 PFRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRNPLIEGHGNFGSVDNDPPAAMR 121 Query: 131 YTEARM-TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189 YTE R+ T +L+ ++ + VDF D ++ EPVV P++ P LL NG+SGIAVGMAT Sbjct: 122 YTECRLQTLSTNALLRDIEAETVDFIDNFDGSQQEPVVLPARVPQLLLNGSSGIAVGMAT 181 Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249 +IP HN+ E+ + +ALI NPE++ +L + I GPDFPTGG I+ R I ++Y GRG Sbjct: 182 NIPPHNLGELIDGTIALIHNPEMAESELHKLIPGPDFPTGGQIL-GRSGIRDAYTSGRGS 240 Query: 250 FRVRARWCVEEV---GRGSW-CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305 +R +E + GR CI+VTE+PYQ K+ LIE+IA+L+ KRI + DIRDES Sbjct: 241 ITMRGVAQIETLEQRGRPDRDCIIVTELPYQTNKAALIERIADLVNEKRIEGISDIRDES 300 Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365 D ++ R P +++ +++ + +++ F NM L G PQ++ L L +L Sbjct: 301 DRDGMRIVIELKRDAYPRVVLNNLYKQTPIQSNFGANMLALVNGE-PQLLTLKQFLTVFL 359 Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFS 422 R E + RR+ + ++ R +L+GLLIA N+D +I +IR + + ++ +F Sbjct: 360 EFRVETITRRTQYELRKAQERDHLLQGLLIALDNLDAVIQLIRGAADATTARDGLIEQFG 419 Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482 L+ Q DAIL ++LR L LE +I +E L A+ + +L ++ I E+ ++ Sbjct: 420 LSVVQADAILQMQLRRLTALEAEKIHAEHQELEAKIADLQDILARRERIEAIIEEELTQI 479 Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL-- 540 K I + RRT E+ + + +I E ++++ +G+I+ + + Sbjct: 480 KTIHATP-----RRT---EIIHDEGEIVDTDLIANEQAIILLTEQGYIKRMPVSTFGAQS 531 Query: 541 ------SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPA 577 +A KE D ++ L D +L S G YTLPA Sbjct: 532 RATRGKAAAKIKEDDVVEHFLSCCDHDHVLFFSDRGVVYTLPA 574 >gi|157413533|ref|YP_001484399.1| DNA gyrase subunit A [Prochlorococcus marinus str. MIT 9215] gi|157388108|gb|ABV50813.1| DNA gyrase/topoisomerase IV, subunit A [Prochlorococcus marinus str. MIT 9215] Length = 865 Score = 377 bits (968), Expect = e-102, Method: Compositional matrix adjust. Identities = 224/591 (37%), Positives = 346/591 (58%), Gaps = 32/591 (5%) Query: 7 SNSNTLVEENVKAVS--LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEM 64 S+++ L E+N + + LR + YL YA+S I RA+PD RDG KPVHRRI++AM E+ Sbjct: 7 SDNSGLSEDNDRIIQTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYEL 66 Query: 65 GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124 GL G ++K AR+VGEV+GK HPHGD +VYD+LVR+AQ F R PLI G GNFG++D D Sbjct: 67 GLTSGRPYRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRMPLIDGHGNFGSVDND 126 Query: 125 SAAAYRYTEARMTQVA-ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183 AA RYTE+R+ + E +L+ ++ + VDF D ++ EP V P++ P LL NG+SGI Sbjct: 127 PPAAMRYTESRLQSLTDESLLEDIESETVDFSDNFDGSQQEPTVLPARIPQLLLNGSSGI 186 Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243 AVGMAT+IP HN+ E+ ++I NP I +L E I GPDFPTGG I+ RE I E++ Sbjct: 187 AVGMATNIPPHNLGELINGLKSIIKNPSIEDRELFEIIKGPDFPTGGQIL-GREGIRETF 245 Query: 244 RLGRGGFRVRARWCVEE---VGRGSW-CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299 + G+G +R +E+ +GR +++TE+P+Q K+ LIE+IA+L+ K++ + Sbjct: 246 KTGKGSITMRGVANIEQIKSIGRAEKDAVIITELPFQTNKAALIERIADLVNEKKLEGIS 305 Query: 300 DIRDESAED-VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLD 358 DIRDES D +RIV+ K S P +++ ++F L+ ++ F N+ L G P + L Sbjct: 306 DIRDESDRDGMRIVIELKRDSY-PQVVLNNLFKLTPLQNNFSANILALVKGE-PTTLSLR 363 Query: 359 GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKP 415 +L +L R E + RR++F ++ + R I+KGLL+A +DEII +IR+ + Sbjct: 364 KMLDVFLDFRVETIRRRTAFLLKKAEERDHIVKGLLLALDAMDEIINLIRSAKDSISARE 423 Query: 416 VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQI 475 + + L+ Q DAIL ++LR L LE +IK E + L + +LNS ++ + I Sbjct: 424 KLQNEHKLSSIQSDAILQMQLRRLTALEADKIKEEHNELTRKINLYQQILNSKERIFEII 483 Query: 476 ACEIREVKEIFSKSTDLGRRRTTFCEVSRA-DKATLQQAMIEKEPITVVISNRGWIRSLK 534 E+ ++ FS R+T ++ D L I + V+++ G+++ + Sbjct: 484 LEELNQIDGKFSSP-----RKTEILDLGGGLDDIDL----IANDRSVVLLTEAGYLKRMP 534 Query: 535 SHSVDLSA--------LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPA 577 + + ++ KE D +K+ + + D +LL S G AY LPA Sbjct: 535 VNDFESTSRGSRGKAGTKTKEDDDVKLFISCNDHDTLLLFSDRGVAYALPA 585 >gi|242032527|ref|XP_002463658.1| hypothetical protein SORBIDRAFT_01g003750 [Sorghum bicolor] gi|241917512|gb|EER90656.1| hypothetical protein SORBIDRAFT_01g003750 [Sorghum bicolor] Length = 845 Score = 377 bits (968), Expect = e-102, Method: Compositional matrix adjust. Identities = 240/710 (33%), Positives = 392/710 (55%), Gaps = 41/710 (5%) Query: 13 VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72 V+E + V L + Y++YA+S + RA+PD+RDG KPVHRRI++AM EMGL F Sbjct: 92 VKERILPVELHKEATQAYMSYAMSVLLGRALPDVRDGLKPVHRRILYAMHEMGLASRRPF 151 Query: 73 KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132 +K AR+VGEV+GK HPHGD +VY+SLVR+AQ F RYPL+ G GNFG++D D AA RYT Sbjct: 152 RKCARVVGEVLGKFHPHGDTAVYESLVRMAQDFSMRYPLVQGHGNFGSVDADPPAAMRYT 211 Query: 133 EARMTQVAE-LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191 E R+ +AE + L ++ + VDF ++ EP + P++ P+LL NG+SGIAVGMAT+I Sbjct: 212 ECRLDSLAEAMFLTDLELNTVDFVPNFDNSQKEPSLLPARVPSLLLNGSSGIAVGMATNI 271 Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251 P HN+ E+ + +I NPE ++++LLE + GPDFPTGG I+ + I+E+Y+ GRG Sbjct: 272 PPHNLGELVDVLSVIIQNPEATLQELLECMPGPDFPTGGTIL-GNQGILEAYKSGRGRIV 330 Query: 252 VRARWCVEEVGRGS--WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309 VR + +E + S I++ EIPYQ K+ L++KIAEL K + + DIRDES Sbjct: 331 VRGKTDIETIDEKSKRTAIIIKEIPYQTNKATLVQKIAELAEDKVLEGISDIRDESDRTG 390 Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369 V+ RS DP +++ +++ + +++ F NM + G+ P++M L IL+ +L R Sbjct: 391 MRVVIELKRSADPAIVLNNLYRHTALQSSFSCNMVAILDGQ-PKLMGLKEILQAFLDFRC 449 Query: 370 EVLFRRSSFRM-QAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTE 425 V+ RR+ +++ QA++R+ I++G++I N+D +I +IR N +V F L+E Sbjct: 450 SVIERRARYKLSQALERK-HIVEGIVIGLDNLDAVIQMIRETSNHTAATGALVKEFDLSE 508 Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485 Q +A+L++ L+ L LE + E L E K++ LL+S + + I E ++K Sbjct: 509 KQAEALLDITLKRLTSLERKKFVDEAKILSEEISKLNELLSSKELIFQLIQQEAADLKNK 568 Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL----- 540 FS + CEV D ++ +++ ++S +G+ + + ++ L Sbjct: 569 FSTPRRSLIDDSVSCEVDDIDIIPNEEMLLK------ILSEKGYAKRMNPNTFSLQHRGT 622 Query: 541 ---SALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQL 592 S + DS + T D +L S G +AY +P + G + Sbjct: 623 IGKSVGKMRLNDSTSDFIVCQTHDHVLYFSDKGIVYSARAYKIPE---CTRTATGTPLVQ 679 Query: 593 LIDLNHNQDI-----VTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSE 647 L+ L+ + I V+ F D +L V+ + I +T G +++ Sbjct: 680 LLPLSDGERITSIIPVSEFGEDQCLVMLTVNGYIKKVPLNAFSSIRST--GIISIQLVPG 737 Query: 648 EKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDG 695 +++K V + D VA+ + ++++ S D++ + R +GV K+G Sbjct: 738 DELKWVRRCGNDDLVALASQKGRVIVNSCDKLRALGRNTRGVYAMKLKEG 787 >gi|225028833|ref|ZP_03718025.1| hypothetical protein EUBHAL_03120 [Eubacterium hallii DSM 3353] gi|224953829|gb|EEG35038.1| hypothetical protein EUBHAL_03120 [Eubacterium hallii DSM 3353] Length = 852 Score = 377 bits (967), Expect = e-102, Method: Compositional matrix adjust. Identities = 209/577 (36%), Positives = 341/577 (59%), Gaps = 26/577 (4%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 + + V L+ +E+ Y+ YA+S I RA+PD+RDG KPV RRI+++M E+ +K Sbjct: 8 DKIHEVDLKNTMEKSYIDYAMSVIVSRALPDVRDGLKPVQRRILYSMIELNNGPDKPHRK 67 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 ARIVG+ +GK HPHGD S+Y +LV LAQ + RYPL+ G GNFG++DGD AAA RYTEA Sbjct: 68 CARIVGDTMGKYHPHGDSSIYGALVNLAQDWSTRYPLVDGHGNFGSVDGDGAAAMRYTEA 127 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 R+++++ + + +D VDF ++E + EP + PS+FPNLL NG GIAVGMAT+IP H Sbjct: 128 RLSKISMEMTADIYKDTVDFVPNFDETEKEPSILPSRFPNLLVNGAQGIAVGMATNIPPH 187 Query: 195 NVQEICEAALALIDNP-----EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249 N++E + + +IDN + I++LLE + GPDFPTG I+ R+ I ++YR GRG Sbjct: 188 NLRETIDGVVKIIDNQVEEDRDTEIDELLEIVKGPDFPTGAAIL-GRKGIDQAYRTGRGK 246 Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309 +VRA +E + G I+VTE+PY V K+RLIEKIA+L+ KRI + ++RDES Sbjct: 247 IKVRAVTNIEPMKNGKQRIIVTELPYMVNKARLIEKIADLVKEKRIDGITELRDESDRSG 306 Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369 + + ++ ++L++ +F + ++ F + M L + P+V+ L +L +L H++ Sbjct: 307 MRICIETRKDVNANVLLKQLFKHTQLQDTFGVIMLAL-VDNQPKVLNLKEMLVHYLNHQK 365 Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTEN 426 +V+ RR+ + + R IL+GLL A IDE+I IIR N + + ++ RF ++ Sbjct: 366 DVVTRRTKYELNKAKERAHILEGLLKALDYIDEVIEIIRASKNVAEARDNLIKRFEFSQA 425 Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486 Q AI+++RLR+L LE ++++E D L + +++++L K I EI +++ + Sbjct: 426 QAQAIVDMRLRALTGLEREKLQNEYDELEKKIAELEAILADEKVLLGVIREEILLIRDKY 485 Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKS---HSVD---- 539 G R T E+ D + +A+I ++ + S G+I+ + HS + Sbjct: 486 ------GDDRRTSIEMDMEDLS--DEALIPRKDAIITFSKLGYIKRMTPDNFHSQNRGGK 537 Query: 540 -LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575 + ++ + D ++ T + I+ + G+ Y L Sbjct: 538 GIKGMNVIDEDHIEDLFMTSTHNYIMFFTNKGRVYRL 574 >gi|307292755|ref|ZP_07572601.1| DNA gyrase, A subunit [Sphingobium chlorophenolicum L-1] gi|306880821|gb|EFN12037.1| DNA gyrase, A subunit [Sphingobium chlorophenolicum L-1] Length = 894 Score = 377 bits (967), Expect = e-102, Method: Compositional matrix adjust. Identities = 248/711 (34%), Positives = 372/711 (52%), Gaps = 103/711 (14%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 ++ +S+ ++ YL YA+S I RA+PD+RDG KPVHRRI+ + E G ++KS Sbjct: 12 DISPISIVEEMKASYLDYAMSVIVARALPDVRDGLKPVHRRILFSAHESGFTHNKPYRKS 71 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 ARIVG+VIGK HPHGD ++YD+L R+ Q + R PLI GQGNFG++D D AA RYTEAR Sbjct: 72 ARIVGDVIGKYHPHGDSAIYDALARMTQDWSMRVPLIDGQGNFGSMDPDPPAAMRYTEAR 131 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 + +V +L +D+D VDF+ Y+ +SEP V P++FPNLL NG GIAVGMAT+IP HN Sbjct: 132 LAKVTTALLDDLDKDTVDFQPNYDASESEPQVLPARFPNLLVNGAGGIAVGMATNIPPHN 191 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 + E+ A LA I+NP I+I++L++ + GPDFPT +I+ + +Y GRG +R+R Sbjct: 192 LGEVIRACLAYIENPGITIDELIQIVPGPDFPTAPLIL-GQSGARSAYHTGRGSIMMRSR 250 Query: 256 WCVEEVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVL 313 +EE GRG IV+T IPYQV K+ L+EKIAE KRI + DIRDES E VRIV+ Sbjct: 251 HKIEE-GRGDRQSIVLTAIPYQVGKNGLVEKIAEAAKDKRIEGISDIRDESNREGVRIVM 309 Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373 K R P++++ ++ + ++ FP NM + GR P+++ + I++ ++ R EV+ Sbjct: 310 DLK-RDATPEVVLNQLWRNTPAQSSFPANMLAIRGGR-PELLNIRDIIEAFVRFREEVIT 367 Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR---------- 420 RR+ + + R IL GL+IA N+DE++ IIR P + +++R Sbjct: 368 RRTKYELNKARDRAHILLGLVIAVTNLDEVVRIIRGSASPAEARETLLARDWPVAEIAPY 427 Query: 421 ---------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLL 465 + L++ QV AIL+LRL L L +I SEL L A + ++L Sbjct: 428 LKLVEAIETEASGDTYRLSDTQVRAILDLRLHRLTALGRDEIGSELAELAAAIAEYLAIL 487 Query: 466 NSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVIS 525 + + + E ++ F+ E++ A + +IE+E + V ++ Sbjct: 488 GDRVKLYAVMREEFEAIERDFATP--------RLSEITAAADGIEDEDLIEREEMVVTVT 539 Query: 526 NRGWIRSLKSHSVDL--------SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL-- 575 +G+I+ S S + K+ D++ T +L ST GK Y L Sbjct: 540 VQGYIKRTPLESFRAQARGGKGRSGMATKDEDAITELFVTSTHTPVLFFSTAGKVYRLKV 599 Query: 576 -------------PAGNLLSGRGHGEAIQLLIDLNHNQD--------------------- 601 P NLL G GE IQ ++ L ++D Sbjct: 600 WRLPEGGPATRGRPMVNLLP-LGPGETIQTVLPLPEDEDSWKDLHVMFATANGTVRRNSM 658 Query: 602 -----------IVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF 641 I F DS +L+ G A + EE +++ TR+GK Sbjct: 659 DAFANVPSNGKIAMRFDDDSDDRLI-----GVALLTEEDDVLLATRQGKAI 704 >gi|255513420|gb|EET89686.1| DNA gyrase, A subunit [Candidatus Micrarchaeum acidiphilum ARMAN-2] Length = 804 Score = 377 bits (967), Expect = e-102, Method: Compositional matrix adjust. Identities = 248/762 (32%), Positives = 418/762 (54%), Gaps = 44/762 (5%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 EN+ S+ ++ Y+ YA+S I RA+PD RDG KP RRI++AM + KK Sbjct: 3 ENIVENSIENEMQSSYIDYAMSVIVGRALPDARDGLKPAQRRILYAMYRLNNLHDQQTKK 62 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 SAR+VGEVIGK HPHGD + Y++LVR+AQ F + L+ GQGN G++DGD AA RYTE Sbjct: 63 SARVVGEVIGKYHPHGDMAAYETLVRMAQDFSMNHMLVEGQGNMGSVDGDPPAAQRYTEV 122 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 R+ ++AE +L +D+++V F ++ ++EPVV PSK PNL+ NG+SGIAVG+AT+I H Sbjct: 123 RLRKIAEEMLVDMDKESVPFMPNFDNTETEPVVLPSKVPNLMINGSSGIAVGVATNILPH 182 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 N++E+C A A +DN EI+ ++LL Y+ GPDFPTGGI+ ++ESY GRG +RA Sbjct: 183 NLREVCSAIAAYLDNMEITPQELLNYVKGPDFPTGGIVFYDGR-LIESYIKGRGSVTIRA 241 Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVL 313 R +E+ RG IV+ EIPY V K+ LIEKI L+ + I + D+RDES + +RI + Sbjct: 242 RVSIEKEKRGER-IVINEIPYTVNKASLIEKIGNLVKDRVIEGISDLRDESDKKGIRISI 300 Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373 K + +PD ++ +++ + ++ P+ MNV +G + + ++K ++ HR V+ Sbjct: 301 ELKANT-NPDYVLNALYKHTQLQITMPV-MNVAVLGNRLLNLNIRDMIKIFVEHRFGVVI 358 Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDA 430 R+++ ++ ++R I+ GL+IA +ID ++AIIR N K +++++ +TE Q A Sbjct: 359 NRTNYDLRIANQRKHIVDGLIIATGDIDNVVAIIRGSANSSGAKEALMAKYGITEAQAAA 418 Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490 IL+++L L LE +K+E + L +S+L S ++ + I E +E+ E + Sbjct: 419 ILDMKLSKLTNLEVNNLKAEKEELENSINYYNSVLGSKEKVYQIIKDETKEIAEKYGIDR 478 Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD--------LSA 542 + E+ D +I+ E ++++ G+++ L + + Sbjct: 479 RTAIETSELVEIENED-------LIKDEDSIIILTKDGYMKRLPMDVYKNQGRGGRGVIS 531 Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGR-GHGEAIQLLIDL 596 + KEGD +K + T D +L++++ G K Y +P G GR G+A LI + Sbjct: 532 IDLKEGDFVKQVVRCMTKDYLLVITSAGRVYWLKGYVVPEG----GRYAQGKAAVNLISI 587 Query: 597 NHNQDIVTAF-VYDSTCKLLVVSSKGNAFIVEESEIIANTR-KGKTFLKVSSEE-KMKLV 653 + I D + K L+ +++ ++E+ + R G +K++ ++ + + Sbjct: 588 AEGERIEQIINTRDFSGKNLIFATRRGRIKSTKAELFSRPRANGIRAIKLNEDDIVVGVC 647 Query: 654 VKVTGDHVAVVGENRKLLIFSIDQIPEMSR----GKGVRLQSYKDGGISDVICFKICEGL 709 + G +V + N K + F + M R +G+RL+ + + DV+ + + Sbjct: 648 LSTGGSNVFLATRNGKAIRFMESDLRHMGRVASGVRGIRLKPNDE--LVDVVVADPKKNI 705 Query: 710 TWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751 I R Y ++ L +RGG G + K ++GK + Sbjct: 706 ITITE--RGYGKATLLERYRLQRRGGGGVINLKVTEKTGKVV 745 >gi|239637044|ref|ZP_04678038.1| DNA topoisomerase IV, A subunit [Staphylococcus warneri L37603] gi|239597394|gb|EEQ79897.1| DNA topoisomerase IV, A subunit [Staphylococcus warneri L37603] Length = 801 Score = 377 bits (967), Expect = e-102, Method: Compositional matrix adjust. Identities = 225/697 (32%), Positives = 399/697 (57%), Gaps = 27/697 (3%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 E ++ +SL + +R+ Y+ I+ERA+PD+RDG KPV RRI++AM G F F+K Sbjct: 3 EIIQDLSLEDVIGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTFDKNFRK 62 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 SA+ VG+VIG+ HPHGD SVYD++VRL+Q + R+ LI GN G+ID D AA RYTEA Sbjct: 63 SAKTVGDVIGQYHPHGDSSVYDAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEA 122 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 +++Q++E +L+ ++++ V F Y++ EP+V P++FPNLL NG++GI+ G AT IP H Sbjct: 123 KLSQLSEELLRDINKETVSFIPNYDDTTLEPMVLPARFPNLLINGSTGISAGYATDIPPH 182 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 N+ E+ +A L IDNP+I++ +L++Y+ GPDFPTGGII + + I ++Y G+G VR+ Sbjct: 183 NLGEVIQATLKYIDNPDITVSQLMKYMKGPDFPTGGII-QGLDGIKKAYESGKGKIVVRS 241 Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314 + EE+ G ++VTEIPY+V KS L+++I EL K++ + ++RDE+ + Sbjct: 242 KVDEEELRNGRKELIVTEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRIAI 301 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 + ++ + + ++ SD++ + NM +S GR P++M + I+ ++ H+ EV+ Sbjct: 302 ELKKDVNSEAIKNFLYKNSDLQISYNFNMVAISDGR-PKLMGIKQIIDSYINHQIEVVAN 360 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVDAI 431 R+ F ++ ++R+ I++GL+ A +DE+IA+IRN K +V+ F TE Q +AI Sbjct: 361 RTKFDLEHAEKRMHIVEGLMKALSILDEVIALIRNSKNKKDAKDNLVAEFDFTEAQAEAI 420 Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491 + L+L L + ++ E D L + + +L+ N I E+ E+++ F TD Sbjct: 421 VMLQLYRLTNTDIVALEQEHDELSNLIKDLRHILDDHDALLNVIKNELTEIRKKF--KTD 478 Query: 492 LGRRRTTFCEVS--RADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FK 546 R T E+S + DK + M+ E + + ++ G+I+ + S + S + K Sbjct: 479 --RLSTIEAEISEIKIDK----EVMVPSEEVVLSLTRHGYIKRTSTRSFNASGVSEVGLK 532 Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDIVT 604 +GDSL L +T D L+ + G+ +P L R G+ + ++ ++ ++ ++ Sbjct: 533 DGDSLLKYLDVNTQDTALVFTNKGRYLFIPVHKLAEIRWKELGQHVSQIVSIDEDEQVID 592 Query: 605 AFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF--LKVSSEEKMKLVVKVTGD 659 F ++ +++++ TR K +KV ++++ +++V D Sbjct: 593 VFNEKDFNQREAFYIMATRNGMIKKSSVPQFKTTRYNKPLIAMKVKEQDEVINIMRVESD 652 Query: 660 HVAVVGENRKL-LIFSIDQIPEMS-RGKGVRLQSYKD 694 + V ++ + L +S +++ + R GV+ + KD Sbjct: 653 QLITVVTHKGMSLTYSTNELSDTGLRAAGVKSINLKD 689 >gi|51473405|ref|YP_067162.1| DNA gyrase subunit A [Rickettsia typhi str. Wilmington] gi|81610819|sp|Q68XG2|GYRA_RICTY RecName: Full=DNA gyrase subunit A gi|51459717|gb|AAU03680.1| DNA gyrase [Rickettsia typhi str. Wilmington] Length = 905 Score = 377 bits (967), Expect = e-102, Method: Compositional matrix adjust. Identities = 234/628 (37%), Positives = 353/628 (56%), Gaps = 50/628 (7%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 N+ V++ ++ YL YA+S I RAIPD+RDG KPVHRRII++M E G ++KS Sbjct: 8 NLVPVNIEDEMKASYLDYAMSVIVSRAIPDVRDGLKPVHRRIIYSMYEAGNHASKPYRKS 67 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 ARIVG+V+GK HPHGD ++YDSLVR+ Q F R PL+ GQGNFG++DGD+AAA RYTE+R Sbjct: 68 ARIVGDVMGKYHPHGDSAIYDSLVRMTQDFSLRLPLVDGQGNFGSMDGDAAAAMRYTESR 127 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 M++VA +++ +D+ V F Y+ + EP V P+ FPNLL NG+ GIAVGMAT+IP HN Sbjct: 128 MSKVAHKLVEDIDKGTVSFNINYDGSEEEPSVLPAMFPNLLVNGSGGIAVGMATNIPPHN 187 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 + EI +A IDN +I I LLE + GPDFPTG +I+ I +Y GRG +R + Sbjct: 188 LGEIIDACCLYIDNNDIEILDLLEVVKGPDFPTGSMIL-GISGIRSAYLTGRGSIIMRGK 246 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314 +E +G I++TEIPY V K+RL+EKIAE++ KRI + D+RDES ++ VRI + Sbjct: 247 AEIENIGNSRQAIIITEIPYMVNKARLVEKIAEMVKEKRIEGISDLRDESNKNGVRIFIE 306 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K + + ++++ I+ + ++T F + M L G +P+VM L ++ +++ R V+ Sbjct: 307 LK-KDVVAEVVLNQIYACTQLQTNFGVIMLALKDG-LPKVMNLKEVIAAFVSFREVVITN 364 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK-------------------- 414 R+ + + R IL GL IA NIDEII II+ + Sbjct: 365 RTIYLLNKARDRAHILLGLAIAISNIDEIIYIIKASNDTNLAKQELMDRQWEVLDILPLI 424 Query: 415 -----PVMVS---RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466 VM++ + S TE Q AIL ++L+ L +E+ +++ +L +L E + ++L+ Sbjct: 425 KLVDDKVMLNERGKLSFTEVQAKAILEMKLQRLTAMEKNKLEQDLKHLATEIAEYLNILD 484 Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526 S + + E+ +VKE F+ R T E D+ + +I++E + V ++ Sbjct: 485 SRTRLLEILKEELIKVKEEFAVP------RLTAIEFGEFDQDI--EDLIQREEMVVTVTL 536 Query: 527 RGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAG 578 G+I RS K S L ++ D T +L S GK Y+L Sbjct: 537 GGYIKRVPLSSYRSQKRGGKGRSGLSMRDEDITMQVFVGSTHTPMLFFSNIGKVYSLKLY 596 Query: 579 NL-LSG-RGHGEAIQLLIDLNHNQDIVT 604 L LS +G G + ++ L N+ I Sbjct: 597 KLPLSNPQGKGRPMVNILPLQENEHITN 624 >gi|90961849|ref|YP_535765.1| DNA topoisomerase IV subunit A [Lactobacillus salivarius UCC118] gi|90821043|gb|ABD99682.1| Topoisomerase IV subunit A [Lactobacillus salivarius UCC118] Length = 808 Score = 377 bits (967), Expect = e-102, Method: Compositional matrix adjust. Identities = 241/735 (32%), Positives = 411/735 (55%), Gaps = 43/735 (5%) Query: 13 VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72 E ++ +SL + ER+ Y+ I+ERA+PD+RDG KPV RRI+ AM+E G + AF Sbjct: 3 TERKIQELSLEAVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILFAMNEDGNTYDKAF 62 Query: 73 KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132 +KSA+ VG V+G HPHGD S+Y+++VRL+Q + R PLI GN G++DGDS AA RYT Sbjct: 63 RKSAKSVGNVMGNFHPHGDTSIYEAMVRLSQSWKLREPLIEMHGNNGSMDGDSPAAMRYT 122 Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192 EAR++Q+A +LQ +D+ VD +++ + EP V P++FPNLL NG +GI+ G AT IP Sbjct: 123 EARLSQIASEMLQDIDKKTVDMVLNFDDTEYEPTVLPARFPNLLVNGATGISAGYATEIP 182 Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252 HN+ E EAA+ LI++P S++ L+++I GPDFPTGGI+ + + I ++Y GRG + Sbjct: 183 PHNLSETIEAAIYLINHPNASLDDLMQFIKGPDFPTGGIL-QGIDGIKKAYETGRGRAVL 241 Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRI 311 R++ +E++ I+VTEIPY+V KS L+++I L I K++ + ++RDES E +R+ Sbjct: 242 RSKTKIEDIRGNKQQIIVTEIPYEVNKSALVKRIDGLRILKKVEGISEVRDESDREGLRV 301 Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371 V+ K ++ + ++ +F +D++ + NM ++ R P+ + L IL+ +L H+REV Sbjct: 302 VIELK-KNANAQGILNYLFKNTDLQVSYNFNMVAINNKR-PEHVGLKTILEAYLEHQREV 359 Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQV 428 RR+ F ++ R I+KGL+ A +D++I IR N+ K +VS FS TE Q Sbjct: 360 TTRRTKFDLEKAKAREHIVKGLIKALSILDDVIKTIRASKNKSDAKKNLVSEFSFTEAQA 419 Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488 +AI++L+L L + ++ E + L +++L + K+ I E+ + + + Sbjct: 420 EAIVSLQLYRLTNTDVTALQKEAEELQKAIANFENILANPKELDKVIRKELNAINKKY-- 477 Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKS-HSVDLSALHF 545 G R T + + + M+ +E + +++S+ G+++ SL+S ++ D Sbjct: 478 ----GSERLTVIQDEISSLKIETEVMVAQEDVMLLVSHDGYVKRSSLRSFNASDNDENGL 533 Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIV 603 K+ D + +T + + + G P ++ R GE + + L +++ I+ Sbjct: 534 KDEDYPILQSVVNTLSHLFIFTNKGNLIYRPIHEVIESRWKDTGEHLSQTVGLGNDEYIL 593 Query: 604 TAFVY---DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH 660 AFV+ D K L+ + +G V+ +A+ + G+T+ K + +KL V D Sbjct: 594 NAFVFENIDQDAKFLIATKEGYIKQVK----LADLKPGRTY-KTRASRYIKLKTDV--DE 646 Query: 661 VAVVG--ENRKLLIF-----------SIDQIPEMS-RGKGVRLQSYKDGGISDVICFKIC 706 V V E+ K +F S+D++P GV+ +D +++VI Sbjct: 647 VISVSQVESDKSQVFCASYTGYGLKYSLDEVPTNGVLAAGVKCMDLRDDTLANVILVSES 706 Query: 707 EGLTWIDSAGRSYNR 721 + ++ I G SY + Sbjct: 707 DEVSIITQRG-SYKK 720 >gi|317503406|ref|ZP_07961450.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Prevotella salivae DSM 15606] gi|315665501|gb|EFV05124.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Prevotella salivae DSM 15606] Length = 867 Score = 377 bits (967), Expect = e-102, Method: Compositional matrix adjust. Identities = 251/720 (34%), Positives = 386/720 (53%), Gaps = 65/720 (9%) Query: 22 LRFALEER----YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSAR 77 LR +EE Y+ Y++S I RA+PD+RDGFKPVHRRI++ M +G +KK AR Sbjct: 13 LRINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMLGIGNTSDKPYKKCAR 72 Query: 78 IVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMT 137 +VGEV+GK HPHGD SVY +LVR+ Q + RY L+ GQGNFG+IDGDS AA RYTE R++ Sbjct: 73 VVGEVLGKYHPHGDSSVYGALVRMGQDWNMRYTLVDGQGNFGSIDGDSPAAMRYTECRLS 132 Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197 ++ E I+ +++D VD + +++ EP V P+K PNLL NG +GIAVGMAT++P+HN+ Sbjct: 133 KMGEHIMDDLEKDTVDMTNNFDDTLVEPSVMPTKIPNLLVNGGNGIAVGMATNMPTHNLS 192 Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257 E+ E A IDNP+I ++ L++YI PDFPTG I + + ++Y GRG +RA+ Sbjct: 193 EVIEGCCAYIDNPDIDLDGLMQYIKAPDFPTGAYIY-GIQGVRQAYETGRGRIVMRAKAE 251 Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLFPK 316 +E G IVVTEIPY V K LIE IA+L+ RI + + DES + +RIV+ K Sbjct: 252 IES-GESHDKIVVTEIPYGVNKQLLIENIADLVKEGRIDGISNANDESGRQGMRIVIDVK 310 Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376 R + ++++ +F ++ +++ F +N L GR P+++ L +K ++ HR +V RR+ Sbjct: 311 -RDANANVILNKLFKMTALQSSFSVNNIALVKGR-PRLLSLKECVKYFVEHRHDVTIRRT 368 Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVDAILN 433 + ++ R IL+GL+IA NIDE++ IIR P + RF+L E Q AI++ Sbjct: 369 KYDLKKAQERAHILEGLIIACDNIDEVVHIIRASKTPADAQRNLEQRFNLDELQSKAIVD 428 Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493 +RL L L Q+ +E + L + + +L+ + + E+ EVKE + Sbjct: 429 MRLSQLTGLRMDQLHAEYEELERQIAYLQQILDDPELCKKVMKDELNEVKEKYGDE---- 484 Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHF 545 RRT E+ + + + +P+ + +S+ G+I R V A Sbjct: 485 -RRT---EIKYSSEEFNPEDFYPNDPVVITVSHMGYIKRTPLSEFREQARGGVGAKAARH 540 Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQDIV 603 +E D + A +L + G+ Y L + G G AIQ ++++ + D + Sbjct: 541 REQDFTEFIYPATMHQTMLFFTKKGRCYWLKCFEIPEGDRNSKGRAIQNMLNI-ESDDAI 599 Query: 604 TAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG---KTFLKVSSEEKMKLVVK---VT 657 A + +T L S N+ V I T+ G KT L+ S + V+ V Sbjct: 600 NAILRLTT---LTDESFNNSHYV-----IFATKNGTVKKTSLEAYSRPRANGVIAINIVD 651 Query: 658 GDHVAVV------------GENRKLLIFSIDQIPEMSRG----KGVRLQSYKDGGISDVI 701 GD V V N + + F+ + I M R +G+RL DGG +V+ Sbjct: 652 GDEVVDVRLTNGSNELIMANRNGRAVRFNENTIRTMGRTATGVRGMRL----DGGDDEVV 707 >gi|298368898|ref|ZP_06980216.1| DNA gyrase, A subunit [Neisseria sp. oral taxon 014 str. F0314] gi|298282901|gb|EFI24388.1| DNA gyrase, A subunit [Neisseria sp. oral taxon 014 str. F0314] Length = 920 Score = 377 bits (967), Expect = e-102, Method: Compositional matrix adjust. Identities = 233/630 (36%), Positives = 355/630 (56%), Gaps = 69/630 (10%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 VSL + + YL YA+S I RA+PD+RDG KPVHRR+++AM E+ ++ AA+KKSARIV Sbjct: 19 VSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIV 78 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGD +VYD++VR+AQ F RY LI GQGNFG++DGD AAA RYTE RM ++ Sbjct: 79 GDVIGKYHPHGDSAVYDTIVRMAQDFSMRYVLIDGQGNFGSVDGDGAAAMRYTEIRMAKI 138 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A +L ++E+ V+F Y+ + EP+V P++FP LL NG+SGIAVGMAT+IP HN+ + Sbjct: 139 AHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPALLVNGSSGIAVGMATNIPPHNLTDT 198 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 A L L+D PE I++L+ + PDFPTG I + E Y+ GRG +R + +E Sbjct: 199 INACLRLLDEPETEIDELINILQAPDFPTGATIY-GLSGVREGYKTGRGRVVMRGKTHIE 257 Query: 260 EVGRGS--WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317 +G+ I++ EIPYQV K++L+EKI EL+ K + + D+RDES + V+ Sbjct: 258 PIGKNGEREAIIIDEIPYQVNKAKLVEKIGELVREKTLEGVSDLRDESDKSGMRVVIELK 317 Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377 R+ + ++++ ++ L+ ++ F +NM L G+ P+++ L IL E+L HRREV+ RR+ Sbjct: 318 RNENAEVVLNQLYKLTQLQDSFGINMVALVDGQ-PRLLNLKQILAEFLRHRREVVTRRTL 376 Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDKPKPV---------------MVSR- 420 FR++ I +G +A NIDE+I +I+ + D P+ M+SR Sbjct: 377 FRLKKARHEGHIAEGKAVALSNIDEMIRLIKESADAPEAKEKLLSRAWRSGLVEDMLSRT 436 Query: 421 ----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458 + L+E Q DAIL + LR+L L++ +I + N++A Sbjct: 437 DLDLRMARPEGLPANLGLQEQGYYLSEIQADAILRMSLRNLTGLDQEEIVGDYKNIMA-- 494 Query: 459 EKIDSLLN--SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE 516 KI L+ + ++ QI IRE E+ T+ G R + D A + +I Sbjct: 495 -KIIDFLDILAKPERITQI---IRE--ELEETKTNFGDERRSEINPFGGDIA--DEDLIP 546 Query: 517 KEPITVVISNRGWIRSLKSHSVDL--------SALHFKEGDSLKIALHAHTTDRILLLST 568 + + V +++ G+I++ + A K+ D ++ A+T D ++ + Sbjct: 547 QREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDYLMCFTN 606 Query: 569 DGKA-----YTLPAGNLLS-GRGHGEAIQL 592 GK Y LP G S GR IQL Sbjct: 607 LGKCHWIKVYKLPEGGRNSRGRPINNVIQL 636 >gi|123968701|ref|YP_001009559.1| DNA gyrase subunit A [Prochlorococcus marinus str. AS9601] gi|123198811|gb|ABM70452.1| DNA gyrase/topoisomerase IV, subunit A [Prochlorococcus marinus str. AS9601] Length = 865 Score = 377 bits (967), Expect = e-102, Method: Compositional matrix adjust. Identities = 230/640 (35%), Positives = 365/640 (57%), Gaps = 37/640 (5%) Query: 7 SNSNTLVEENVKAVS--LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEM 64 S+++ L E+N + + LR + YL YA+S I RA+PD RDG KPVHRRI++AM E+ Sbjct: 7 SDNSGLSEDNDRIIQTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYEL 66 Query: 65 GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124 GL G ++K AR+VGEV+GK HPHGD +VYD+LVR+AQ F R PLI G GNFG++D D Sbjct: 67 GLTSGRPYRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRMPLIDGHGNFGSVDND 126 Query: 125 SAAAYRYTEARMTQVA-ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183 AA RYTE+R+ + E +L+ ++ + VDF D ++ EP V P++ P LL NG+SGI Sbjct: 127 PPAAMRYTESRLQSLTDESLLEDIESETVDFADNFDGSQQEPTVLPARIPQLLLNGSSGI 186 Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243 AVGMAT+IP HN+ E+ ++I NP + +L E I GPDFPTGG I+ R+ I E++ Sbjct: 187 AVGMATNIPPHNLGELINGLKSIIKNPSLEDRELFEIIKGPDFPTGGQIL-GRDGIKETF 245 Query: 244 RLGRGGFRVRARWCVEEVGRGSW----CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299 + GRG +R +E++ S +++TE+P+Q K+ LIE+IA+L+ K++ + Sbjct: 246 KTGRGSITMRGVANIEQIKSTSRAEKDAVIITELPFQTNKAALIERIADLVNEKKLEGIS 305 Query: 300 DIRDESAED-VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLD 358 DIRDES D +RIV+ K R P +++ ++F L+ ++ F N+ L G P + L Sbjct: 306 DIRDESDRDGMRIVIELK-RDAYPQVVLNNLFKLTPLQNNFSANILALVKGE-PTTLSLR 363 Query: 359 GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKP 415 +L +L R E + RR+ F ++ + R I+ GLL+A +DEII +IR+ + Sbjct: 364 KMLDVFLDFRVETIRRRTGFLLKKAEERDHIVNGLLLALGAMDEIINLIRSAKDTVSARE 423 Query: 416 VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQI 475 + + L+ Q +AIL ++LR L LE +IK E D L + +LNS ++ + I Sbjct: 424 NLQADHELSATQAEAILQMQLRRLTALEADKIKGEHDELTRKINLYKQILNSKERIFEII 483 Query: 476 ACEIREVKEIFSKSTDLGRRRTTFCEVSRA-DKATLQQAMIEKEPITVVISNRGWIRSLK 534 E+ ++ E FS R+T ++ D L I + V+++ G+++ + Sbjct: 484 LEELNKIDERFSSP-----RKTEILDLGGGLDDIDL----IANDRSVVLLTEAGYLKRMP 534 Query: 535 SHSVDLSA--------LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL-LSGR- 584 + + ++ +E D +K+ + + D +LL S G +Y LPA + +S R Sbjct: 535 VNEFESTSRGSRGKAGTKTQEDDEVKLFISCNDHDTLLLFSDRGVSYALPAYRVPMSSRT 594 Query: 585 GHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKG 621 G L+ + + I + +D+ C LL+++ G Sbjct: 595 AKGTPSVQLLPIPREEKITSLVAVDSFDNDCYLLMLTKAG 634 >gi|110004709|emb|CAK99044.1| probable topoisomerase iv subunit a protein [Spiroplasma citri] Length = 1132 Score = 377 bits (967), Expect = e-102, Method: Compositional matrix adjust. Identities = 241/714 (33%), Positives = 410/714 (57%), Gaps = 41/714 (5%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 +EN SL + ER+ YA I++RA+PD+RDG KPV RRI+ AM+E+ L F ++K Sbjct: 6 KENELVYSLNDIMSERFGRYAKYIIQDRALPDVRDGLKPVQRRILFAMNELRLTFNTSYK 65 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSARIVGEVIGK HPHGD SVYD++VRL+Q + RYPLI GN G+IDGD AAA RYTE Sbjct: 66 KSARIVGEVIGKYHPHGDTSVYDAMVRLSQNWKVRYPLIDMHGNNGSIDGDPAAAMRYTE 125 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 R+++++ +LQ +D+ V F +++ + EPVV P+ FPNLL NG++GIA G AT+IP Sbjct: 126 TRLSEISSFLLQDLDKKTVAFAPNFDDSEQEPVVLPALFPNLLVNGSTGIAAGYATNIPP 185 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ EI A + I+ P+ +++ L++Y+ GPDFPTGGII + + I+E+Y+ G+G VR Sbjct: 186 HNLHEIINATIHFIEKPDSTVKDLVKYVKGPDFPTGGII-QGKSGILEAYQTGKGKIIVR 244 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIV 312 ++ E + +V+TEIPY+V K L++KI ++ + ++++RDE+ E +RIV Sbjct: 245 SKIKFE-----NNALVITEIPYEVVKQDLVKKIDDIKYNEPGLNIKEVRDETDREGLRIV 299 Query: 313 LFPKNRSLDPDLLMESI--FMLSDMETRFPLNMNVLSMG-RVPQVMPLDGILKEWLAHRR 369 + L +E++ F+L + + N N++++ + P+ + L IL ++ H++ Sbjct: 300 I-----ELGKQANVETVRKFLLKNTNLQISYNFNMVAIANKQPRQLGLKEILTHYVEHQQ 354 Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDKPKPV--MVSRFSLTEN 426 EV+ S F + +R EI+ GL+ +DE+IA+IR ++D+ + +V +F T+ Sbjct: 355 EVITNHSRFELARAQKRSEIVAGLIKTISILDEVIAVIRYSKDRSDAIHNLVKKFGFTQI 414 Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486 Q +AI+ LRL L + Q+K+E L+A ++ ++L + + I ++ +K+ F Sbjct: 415 QAEAIVQLRLYRLTSTDILQLKAEQKELIATIAELKAILRDINKLNSVIIHQLELIKKKF 474 Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD-LSALHF 545 + RRR+ A + + +IEK+ + + IS G++++L+++ + L F Sbjct: 475 A-----SRRRSVIENEIEAIEIQKTETIIEKD-LNIWISRDGYLKALENNQLARLVNEEF 528 Query: 546 KE--GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQD 601 K GD A+T+D+ILL+++ G +P + + R GE I + +L + Sbjct: 529 KRKPGDLWIADFQANTSDKILLITSKGNYVIIPVYQIKTVRLRDIGEHINTISELPGEEK 588 Query: 602 IVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV-KVT 657 I++AF+ ++ + +++++K + TR K ++ + ++V ++ Sbjct: 589 IISAFLLNDFNKKEQYIMLATKNGMIKKTAVKDFEATRISKALKAINLKNDDEVVASQLV 648 Query: 658 GDH--VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISD--VICFKICE 707 G H V + N ++ + QIP + G+R K + D VI CE Sbjct: 649 GHHPYVVITTANGFIVKYHKKQIPTL----GLRTAGVKSINLRDDVVINAGYCE 698 >gi|329900831|ref|ZP_08272599.1| DNA gyrase subunit A [Oxalobacteraceae bacterium IMCC9480] gi|327549359|gb|EGF33929.1| DNA gyrase subunit A [Oxalobacteraceae bacterium IMCC9480] Length = 884 Score = 377 bits (967), Expect = e-102, Method: Compositional matrix adjust. Identities = 225/609 (36%), Positives = 345/609 (56%), Gaps = 59/609 (9%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 +SL + + YL YA+S I RA+PD+RDG KPVHRR++ AM EM + + K AR+V Sbjct: 11 ISLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEMNNVWNRPYVKCARVV 70 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 GEV+GK HPHGDQS+YD+LVR+AQ F RY L+ GQGNFG++DGD+AAA RYTE R+ ++ Sbjct: 71 GEVMGKYHPHGDQSIYDTLVRMAQDFSLRYTLVDGQGNFGSVDGDNAAAMRYTECRLDKI 130 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A IL +D+D VDF Y+ ++ EP V P++ PNLL NG SGIAVGMAT+IP HN+ E+ Sbjct: 131 ANEILADIDKDTVDFVPNYDGKEKEPTVLPTRIPNLLINGASGIAVGMATNIPPHNITEV 190 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 + AL ++ N + +I++L+E I PDFPT GII + + YR GRG +RA+ E Sbjct: 191 IDGALHVLRNADCTIDELIEIIPAPDFPTAGIIY-GVSGVRDGYRTGRGRIVMRAKTHFE 249 Query: 260 EVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318 E G+ S I+V E+PYQV K L+E+IAEL+ K++ + DIRDES + V+ R Sbjct: 250 EYGKESRTAIIVDELPYQVNKKSLLERIAELVRDKKLDGISDIRDESDKSGMRVVIELKR 309 Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378 + P++++ +++ + ++ F +NM L G+ P+++ L +L+ +L+HRREV+ RR+ F Sbjct: 310 AEVPEVVLNNLYKQTQLQDTFGMNMVALVDGQ-PKLLNLKQMLQCFLSHRREVVTRRTIF 368 Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAII------------------------------- 407 ++ R +L+GL +A NID+ IAII Sbjct: 369 ELRRARERGHVLEGLAVALANIDDFIAIIKAAPTPPIAKVELMARAWDSSVVREMLVRTG 428 Query: 408 ----------RNEDKPKPVMVSR---FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNL 454 R E+ PK + + L+++Q IL +RL+ L LE+ +I +E + Sbjct: 429 EEALGGINAFRPENLPKHYGIQPDGLYKLSDDQAQEILQMRLQRLTGLEQDKIVNEYKEV 488 Query: 455 LAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAM 514 +A+ + +L+ ++ I E+ K + RR ++ E + D T + + Sbjct: 489 MAQIADLLDILSKPERVTIIIVDELTAAKMEYGIGNKDERR--SYIEHNATDLGT--EDL 544 Query: 515 IEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLL 566 I + + V +S+ G++ RS K A+ K+ D + A+T D IL Sbjct: 545 ITPQDMVVTLSHTGYMKSQPISEYRSQKRGGRGKQAMATKDDDWIDQLFIANTHDYILCF 604 Query: 567 STDGKAYTL 575 S G+ Y L Sbjct: 605 SNRGRLYWL 613 >gi|331083524|ref|ZP_08332636.1| DNA gyrase subunit A [Lachnospiraceae bacterium 6_1_63FAA] gi|330404217|gb|EGG83765.1| DNA gyrase subunit A [Lachnospiraceae bacterium 6_1_63FAA] Length = 828 Score = 377 bits (967), Expect = e-102, Method: Compositional matrix adjust. Identities = 224/613 (36%), Positives = 349/613 (56%), Gaps = 32/613 (5%) Query: 13 VEENV----KAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68 +EENV + V L+ +EE Y+ YA+S I RA+PD+RDG KPV RRI+++M E+ Sbjct: 1 MEENVFDKIQEVDLQKKMEESYIEYAMSVIASRALPDVRDGLKPVQRRILYSMIELNNGP 60 Query: 69 GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128 +K ARIVG+ +GK HPHGD S+Y +LV +AQ + RYPL+ G GNFG++DGD AAA Sbjct: 61 DKPHRKCARIVGDTMGKYHPHGDSSIYGALVNMAQDWSTRYPLVDGHGNFGSVDGDGAAA 120 Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188 RYTEAR+++++ +L ++++ +DF ++ + EP V PS++PNLL NGTSGIAVGMA Sbjct: 121 MRYTEARLSKISMEMLADINKNTIDFAPNFDGTEKEPTVLPSRYPNLLVNGTSGIAVGMA 180 Query: 189 TSIPSHNVQEICEAALALIDNP-----EISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243 T+IP HN++EI A + +IDN E +I++LL + GPDFPTG I+ +R I E+Y Sbjct: 181 TNIPPHNLREIVNAVVKIIDNQIEEQRETTIDELLSIVKGPDFPTGATILGTR-GIEEAY 239 Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303 R GRG RVRA +E + G I+VTE+PY V K+RLIEKIAEL+ K+I + DI D Sbjct: 240 RTGRGKIRVRAVTDIETLPNGKSQIIVTELPYMVNKARLIEKIAELVRDKKIDGITDISD 299 Query: 304 ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363 S + + R + ++++ ++ + M+ F + M L +G P+VM L +L+ Sbjct: 300 HSNREGMRICITLRRDANANVILNRLYKHTQMQDTFGVIMLAL-VGNTPKVMSLLEMLEH 358 Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSR 420 +LAH+ EV+ RR+ + + + R I+ GLL A ID+II IIR+ + K ++ Sbjct: 359 YLAHQEEVVTRRTQYDLNKAEARAHIVSGLLKALDVIDQIIKIIRSSKTRQEAKETLMDT 418 Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480 F +E Q I+N+RL L +E +++ E L + ++ ++L+ N + IR Sbjct: 419 FGFSEVQAQEIVNMRLYQLTGMERERLEKEFQELEIKIRELKAILSD----RNLLLRVIR 474 Query: 481 EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RS 532 + EI + + G R T D + + +I KE + ++ G+I RS Sbjct: 475 Q--EILAIAEKYGDDRRTAIGYDEFDIS--MEDLIPKENTVIAMTKLGYIKRMTVDNFRS 530 Query: 533 LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAI 590 + + + D ++ L T ++ ++ G+ Y + A + S G AI Sbjct: 531 QNRGGKGIKGMSTIDDDYIEELLMTTTHHYLMFFTSAGRVYRIKAYEIPEASRTARGTAI 590 Query: 591 QLLIDLNHNQDIV 603 L+ L + I Sbjct: 591 INLLQLQPEEKIT 603 >gi|323462878|pdb|3LPX|A Chain A, Crystal Structure Of Gyra gi|323462879|pdb|3LPX|B Chain B, Crystal Structure Of Gyra Length = 500 Score = 376 bits (966), Expect = e-102, Method: Compositional matrix adjust. Identities = 203/453 (44%), Positives = 286/453 (63%), Gaps = 40/453 (8%) Query: 41 RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVR 100 RA+PD+RDG KPVHRR++ AM +G D+ A+KKSAR+VG+VIGK HPHGD +VYD++VR Sbjct: 2 RALPDVRDGLKPVHRRVLFAMDVLGNDWNKAYKKSARVVGDVIGKYHPHGDTAVYDTIVR 61 Query: 101 LAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNE 160 +AQPF RY L+ GQGNFG++DGDSAAA RYTE RM+++A IL +D++ VDF Y+ Sbjct: 62 MAQPFSLRYMLVDGQGNFGSVDGDSAAAMRYTEIRMSKIAHSILADLDKETVDFVPNYDG 121 Query: 161 EDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEY 220 + P V P++ PNLL NGTSGIAVGMAT+IP HN+ E+ A LALIDN E++ E++LE+ Sbjct: 122 TEHIPAVMPTRVPNLLVNGTSGIAVGMATNIPPHNLTEVINACLALIDNSELTFEEILEH 181 Query: 221 IIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE-EVGRGSWCIVVTEIPYQVQK 279 I GPDFPT GII R I E+YR GRG ++RAR ++ G I+V E+PYQV K Sbjct: 182 IPGPDFPTAGII-SGRAGIEEAYRTGRGKIKIRARASIDVHETTGKETIIVHELPYQVNK 240 Query: 280 SRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRF 339 +RLIEK+AEL+ KR+ + +RDES +D ++ R ++++ +++ L+ M+ F Sbjct: 241 ARLIEKMAELVKDKRLEGISALRDESDKDGMRMVIEIKRGEVGEVVLNNLYKLTQMQVSF 300 Query: 340 PLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLN 399 LNM L+ G+ P++ + +L+ ++ HRREV+ RR+ F ++ R IL+GL IA N Sbjct: 301 GLNMVALTNGQ-PKIFNIKEMLEAFVLHRREVVTRRTIFELRKARDRAHILEGLSIALAN 359 Query: 400 IDEIIAIIRNEDKPKPV----------------MVSR---------------------FS 422 ID II +I+N + K M+S + Sbjct: 360 IDPIIEMIKNSNNRKESEEKLISQGWELGNVANMLSEAGNDAARPEWLEPEYGIRDGLYY 419 Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLL 455 LT Q AI++L+L L +E +I SE LL Sbjct: 420 LTAEQAKAIVDLQLYKLSGMEHDKILSEYKALL 452 >gi|315452542|ref|YP_004072812.1| DNA gyrase, subunit A [Helicobacter felis ATCC 49179] gi|315131594|emb|CBY82222.1| DNA gyrase, A subunit [Helicobacter felis ATCC 49179] Length = 806 Score = 376 bits (966), Expect = e-102, Method: Compositional matrix adjust. Identities = 253/708 (35%), Positives = 403/708 (56%), Gaps = 43/708 (6%) Query: 13 VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72 ++ ++ + + +L+E YL Y++S I RA+PD RDG KPVHRRI++AM E+GL + Sbjct: 1 MQPKIEDIRIEESLKESYLDYSMSVIVGRALPDARDGLKPVHRRILYAMHELGLGSKVPY 60 Query: 73 KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132 KKSARIVG+VIGK HPHGD +VY++LVR+AQ F R PL+ GQGNFG+IDGD+AAA RYT Sbjct: 61 KKSARIVGDVIGKYHPHGDSAVYEALVRMAQDFSMRLPLVDGQGNFGSIDGDNAAAMRYT 120 Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192 EARM +E +L+ +D+D +DF Y+ EP + PS+ PNLL NG+SGIAVGMATSIP Sbjct: 121 EARMAAPSEELLRDLDKDTIDFVSNYDSTLKEPDILPSRLPNLLINGSSGIAVGMATSIP 180 Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252 H EI +A + +++NP+ + L+E + GPDFPTGG +V + I+E+Y GRG +V Sbjct: 181 PHRPDEIIDALIYVLENPQAELIDLVEIVQGPDFPTGG-VVYGKAGILEAYTTGRGRIKV 239 Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRI 311 RA+ VE+ I++ EIPYQV K++L+E+I+ L K + + ++RDES E VR+ Sbjct: 240 RAKSRVEK-HNNRETIIIEEIPYQVNKAKLVEQISTLAKDKIVEGIAEVRDESDREGVRV 298 Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371 V+ K + ++++ ++ S+ME F + + + + P+V L +LK +L HR+ V Sbjct: 299 VIELKKDAYS-EIVLNHLYKSSNMEITFSIILLAI-YNKEPRVFNLLELLKLFLVHRKSV 356 Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQV 428 + RR+ ++ R IL+GL +A + + +IA+I+ + K +++ L+E Q Sbjct: 357 VIRRTIHELEKAKARAHILEGLKVAMQHSEAVIALIKGSADAQGAKDLLMQTHHLSEEQS 416 Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488 AIL++RL+ L LE+ +I+ E L + ++ +L + + I E+ EVKE FS Sbjct: 417 KAILDMRLQRLTGLEQEKIQQEHTQLQEKIALLEEILQNADKLNALIKEELLEVKEKFST 476 Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSVDLSALHFK 546 R+T ++ + + +I E + V IS++G+++ LK + K Sbjct: 477 P-----RKT---QIEEDYEGIGIEDLIAHEDMVVTISHKGYVKRVPLKVYEQQRRGGKGK 528 Query: 547 ------EGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLID 595 E D ++ A+T D IL ++ G K Y +P + G A+ LID Sbjct: 529 NSGNTHEDDFIESFFIANTHDTILFITNTGQLHWLKVYKIPE---MGRNAIGRALVNLID 585 Query: 596 LNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTR-KGKTFLKVSSEEKMK 651 L + I +D+ L+ + G IV+ +E+ A R +G V E+ Sbjct: 586 LQPGESIKATIPTKDFDADKSLVFFTKNG---IVKRTELSAFGRIRGGVRAIVLEEDDAL 642 Query: 652 LVVKVTGDHVA--VVGENRKLLI-FSIDQIPEMSR-GKGVRLQSYKDG 695 + K+ V + ++ + I FS++ + EM R +GVR ++G Sbjct: 643 VTAKIIDSSVQELFMASSKGMCIRFSVESVREMGRVARGVRGMRLREG 690 >gi|268323308|emb|CBH36896.1| DNA gyrase subunit A [uncultured archaeon] Length = 843 Score = 376 bits (966), Expect = e-102, Method: Compositional matrix adjust. Identities = 215/576 (37%), Positives = 352/576 (61%), Gaps = 27/576 (4%) Query: 13 VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72 V E V VS+ + Y+ YA+S I RA+PD RDG KPVHRRI++ M E+G+ Sbjct: 10 VRERVIEVSVEDEMTHSYMDYAMSVIVGRALPDARDGLKPVHRRILYGMHELGVTHNRPH 69 Query: 73 KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132 KKSARIVG+V+GK HPHGD +VYD++VR+AQ F RYPL+ GQGNFG++DGD+AAA RYT Sbjct: 70 KKSARIVGDVLGKYHPHGDVAVYDTMVRMAQDFSYRYPLVDGQGNFGSVDGDAAAAMRYT 129 Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192 EAR++++A +L +++D V++ ++ EP + P+K PNLL NG+SGIAVGMAT++P Sbjct: 130 EARLSKIAGELLVDLEKDTVEWSPNFDNSLKEPQILPAKLPNLLINGSSGIAVGMATNMP 189 Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252 HN+ E+ + + +I+ PE+SIE+L++ I PDFPT G I+ E I +Y GRG R+ Sbjct: 190 PHNLTEVVDGVIRVIEEPEVSIEELMQIIKAPDFPT-GGIIIGYEGIKRAYETGRGSIRI 248 Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRI 311 RA+ +E G+ IV+ EIPYQV KSRL+E+IAE ++ + +RDES + +RI Sbjct: 249 RAKAEIEVKGKKER-IVINEIPYQVNKSRLVEEIAEFAKKYKVESISGLRDESDRKGMRI 307 Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371 V+ K + +++ ++ + +E F + +N+ + P+V+ L +++ ++ HR+EV Sbjct: 308 VIELKA-GANSAIILNRLYKHTQLENTFGV-INLALIDGEPRVLTLKELIECYIKHRKEV 365 Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQV 428 RR + ++ ++R+ ILKGL+IA NIDE+I +I+ + K +++RF L+E Q Sbjct: 366 TIRRLQYELERAEKRLHILKGLIIAISNIDEVIRLIKAASDTKTAKSALIARFELSEEQA 425 Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488 IL++RL L LE +I++E L + + +L S + + + ++ E K+ + Sbjct: 426 KEILDMRLSRLSALERDKIETERAELETKINWLKEVLGSEARIYELLKEDLIEQKDKYGD 485 Query: 489 STDLGRRRTTFCEVSRADKATL-QQAMIEKEPITVVISNRGWIRSLKSH--------SVD 539 + RRT E+ TL ++ +E++ + + ++ R +++ L + Sbjct: 486 A-----RRTNIEEM-----VTLSERDFVEEKEVILYLTQRDYVKRLPADIFKQQMRGGKG 535 Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTL 575 ++ + KE D + + A T +R++ + GKAY + Sbjct: 536 IAVIEKKEDDKIVNFIRASTRERLIFFTEFGKAYQV 571 >gi|227877546|ref|ZP_03995606.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus crispatus JV-V01] gi|256843826|ref|ZP_05549313.1| DNA gyrase, A subunit [Lactobacillus crispatus 125-2-CHN] gi|256849619|ref|ZP_05555051.1| DNA gyrase, subunit A [Lactobacillus crispatus MV-1A-US] gi|262046287|ref|ZP_06019250.1| DNA gyrase, A subunit [Lactobacillus crispatus MV-3A-US] gi|293380896|ref|ZP_06626932.1| DNA gyrase, A subunit [Lactobacillus crispatus 214-1] gi|227862845|gb|EEJ70304.1| DNA topoisomerase (ATP-hydrolyzing) [Lactobacillus crispatus JV-V01] gi|256613731|gb|EEU18933.1| DNA gyrase, A subunit [Lactobacillus crispatus 125-2-CHN] gi|256713735|gb|EEU28724.1| DNA gyrase, subunit A [Lactobacillus crispatus MV-1A-US] gi|260573617|gb|EEX30174.1| DNA gyrase, A subunit [Lactobacillus crispatus MV-3A-US] gi|290922569|gb|EFD99535.1| DNA gyrase, A subunit [Lactobacillus crispatus 214-1] Length = 826 Score = 376 bits (966), Expect = e-102, Method: Compositional matrix adjust. Identities = 218/621 (35%), Positives = 356/621 (57%), Gaps = 38/621 (6%) Query: 8 NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67 + N + +K V L + +L YA+S I RA+PD+RDG KPV RRI++ MSE+G+ Sbjct: 2 DENQTQDHRIKNVDLTSMMRSSFLDYAMSVIVARALPDVRDGLKPVQRRILYGMSELGVT 61 Query: 68 FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAA 127 +KKSARIVGEV+GK HPHGD S+Y ++ +AQ F RY L+ G GNFG++DGD A Sbjct: 62 PDKPYKKSARIVGEVMGKFHPHGDSSIYLAMAHMAQDFSYRYMLVDGHGNFGSVDGDEPA 121 Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187 A RYTEARM+++A +L+ ++++ +D++ Y++ ++EPVV P++ PNLL NG +GIAVGM Sbjct: 122 AMRYTEARMSKIAVEMLRDINKNTIDWQRNYDDTENEPVVLPARIPNLLVNGANGIAVGM 181 Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247 T+IP HN+ E+ L+ NP+ + + L++ I GPDFPT G I+ R I +Y G+ Sbjct: 182 TTNIPPHNLTEVISGLHMLMKNPDATTKDLMKVIPGPDFPT-GGIIMGRGGIYRAYESGK 240 Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307 G VRA+ +E G I+V+EIP+ V K+ L++KIA+L K I + +RDES + Sbjct: 241 GNIVVRAKTNIETEKSGRERIIVSEIPFMVNKAELVKKIADLAREKTIDGITGVRDESDQ 300 Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367 + R +++ ++F + M+ F +NM + G P + L +L+ +L H Sbjct: 301 TGMRITIDIRRDASASVVLNNLFKQTQMQANFGMNMVAIVDG-APHFLTLKQMLQYYLDH 359 Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLT 424 + +V+ RR+ F + + R IL+GL IA NIDEI+ IIRN D K ++SRF L Sbjct: 360 QEDVVTRRTRFELAKAEARAHILEGLRIALDNIDEIVHIIRNSQSSDIAKATLISRFGLD 419 Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484 + Q AIL++RL L LE ++++E L A+ +L+ ++ I E+ ++++ Sbjct: 420 DKQSQAILDMRLVRLTGLERDKVEAEYKELQAKIADYKDILSKPERIDQIIYDELLDIQK 479 Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSLKSHSVD---- 539 F +RRT E+ ++ +++ + +IEK+ I + +++ G+I+ + Sbjct: 480 RFGD-----KRRT---EIGASEVVSIEDEDLIEKQNILLTVTHNGYIKRMPIQEFKTQNR 531 Query: 540 ----LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNL 580 + + ++GD ++ +++ T D +L + GK Y+ LP NL Sbjct: 532 GGKGIKGMGVQDGDFIEHLIYSSTHDLLLFFTNAGKVYSKKAYEIPEYGRAAKGLPVVNL 591 Query: 581 LSGRGHGEAIQLLIDLNHNQD 601 L GE +Q +I++ D Sbjct: 592 LQLE-KGEKVQTVINIPEGAD 611 Score = 37.7 bits (86), Expect = 7.1, Method: Compositional matrix adjust. Identities = 44/160 (27%), Positives = 68/160 (42%), Gaps = 6/160 (3%) Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHN 599 L AL K+GD L L IL+ + G A T G++ + G A I+L + Sbjct: 640 LIALTLKDGDELSNVLTTDGKQNILIGTHLGYAVTFNEGDVRA-MGRTAAGVRGINLREH 698 Query: 600 QDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT-- 657 +V + + + ++LV+S KG SE R GK + EK + VT Sbjct: 699 DYVVGSGILGADDQVLVISEKGYGKRTPASEYPVKGRGGKGIKTANITEKNGPLAGVTII 758 Query: 658 --GDHVAVVGENRKLLIFSIDQIPEMSRGK-GVRLQSYKD 694 + V V+ + ++ F ID + + R GVRL D Sbjct: 759 NSNNDVMVITTDGIMIRFRIDDVSQTGRSTMGVRLIKVSD 798 >gi|308175820|ref|YP_003915226.1| DNA gyrase subunit A [Arthrobacter arilaitensis Re117] gi|307743283|emb|CBT74255.1| DNA gyrase subunit A [Arthrobacter arilaitensis Re117] Length = 875 Score = 376 bits (966), Expect = e-102, Method: Compositional matrix adjust. Identities = 208/530 (39%), Positives = 333/530 (62%), Gaps = 26/530 (4%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 V + L+ ++ YL YA++ I RA+PD+RDG KPVHRR+++AM + G ++ K A Sbjct: 26 VDQIDLQTEMQRSYLDYAMAVIVGRALPDVRDGLKPVHRRVLYAMYDGGYRPERSYNKCA 85 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VGEV+G+ HPHGD ++YD+LVRL Q +V RYPL GQGNFG+ D AAA RYTE +M Sbjct: 86 RVVGEVMGQYHPHGDTAIYDALVRLIQDWVMRYPLALGQGNFGSPGNDGAAAQRYTETKM 145 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 +A +++ ++E+ VDF+D Y+ ++ EP V P++FPNLL NG+SGIAVGMAT+IP HN+ Sbjct: 146 APLAMEMVRDINENTVDFQDNYDGKNQEPTVLPARFPNLLVNGSSGIAVGMATNIPPHNL 205 Query: 197 QEICEAALALIDNPEISIEKLLEYII----GPDFPTGGIIVESRESIVESYRLGRGGFRV 252 +E+ E + NPE S E+LL ++ GPDFP+G +I+ ++ I ++YR GRG + Sbjct: 206 REVAEGVQWYLQNPEASREELLAELMLRVKGPDFPSGAMILGTK-GISDAYRTGRGSITM 264 Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV--R 310 RA VEE+ +G C+VVTE+PY L KIAEL+ +I + D+RDE++ R Sbjct: 265 RAVVNVEEI-QGRTCLVVTELPYMANPDNLAVKIAELVRDGKISGIADMRDETSGRTGQR 323 Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370 +V+ K R +++ +++ +++++ F NM + G VP+ +PLDG ++ W+ H+ E Sbjct: 324 LVIVLK-RDAVAKVVLNNLYKHTELQSNFSANMLAIVDG-VPRTLPLDGFIRHWVTHQIE 381 Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQ 427 V+ RR+ +R++ + IL+GLL A +DE+IA+IR + + ++ + E+Q Sbjct: 382 VIVRRTEYRLKKAEEEAHILRGLLKALDALDEVIALIRRSATTEAARDGLMELLDIDEDQ 441 Query: 428 VDAILNLRLRSLRKLEEYQIK---SELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484 AIL+++LR L LE +I+ +ELD ++AE + I + + +Q+ QI E E++E Sbjct: 442 ARAILDMQLRRLAALERQKIQDRHAELDRMIAEFKAI--IADPARQR--QIVSE--ELQE 495 Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK 534 I +K D RRT D + + +I +E + V I+ G+++ + Sbjct: 496 IVAKHGD--DRRTKVLMGYDGDMSV--EDLIPEEEMVVTITRGGYVKRTR 541 >gi|282899477|ref|ZP_06307443.1| DNA gyrase, subunit A [Cylindrospermopsis raciborskii CS-505] gi|281195634|gb|EFA70565.1| DNA gyrase, subunit A [Cylindrospermopsis raciborskii CS-505] Length = 842 Score = 376 bits (966), Expect = e-102, Method: Compositional matrix adjust. Identities = 244/691 (35%), Positives = 389/691 (56%), Gaps = 45/691 (6%) Query: 35 LSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSV 94 +S I RA+PD RDG KPVHRRI++AM E+GL F+K AR+VGEV+GK HPHGD +V Sbjct: 1 MSVIVGRALPDARDGLKPVHRRILYAMHELGLLHDRPFRKCARVVGEVLGKYHPHGDTAV 60 Query: 95 YDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV-AELILQGVDEDAVD 153 YD+LVR+AQ F R PLI+G GNFG+ID D AA RYTE R+ + + +LQ ++ + VD Sbjct: 61 YDALVRMAQDFSMRSPLINGHGNFGSIDNDPPAAMRYTECRLQALTSSSLLQDIESETVD 120 Query: 154 FRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEIS 213 F D ++ EP V PS+ P LL NG+SGIAVGMAT+IP HN+ E+ + +ALI NPEI+ Sbjct: 121 FIDNFDGSQQEPTVLPSRIPQLLLNGSSGIAVGMATNIPPHNLGELIDGLVALIYNPEIT 180 Query: 214 IEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSW----CIV 269 +L++Y+ GPDFPTG I+ + +I E+Y GRG +R +E + + + I+ Sbjct: 181 DTQLMQYVHGPDFPTGAQILGT-SAIKEAYTTGRGSITMRGLATIETIQQRNRPEREAII 239 Query: 270 VTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKNRSLDPDLLMES 328 +TE+PYQ K+ LIEKIAEL+ K+I + DIRDES D +RIV+ K S P +++ + Sbjct: 240 ITELPYQTNKAALIEKIAELVNDKKIDGIADIRDESDRDGMRIVIELKRDSY-PRVVLNN 298 Query: 329 IFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVE 388 ++ + ++T F NM L G PQ++ L L +L R E + RR+ ++++ + R Sbjct: 299 LYKQTPLQTNFGANMLALVNGE-PQILTLKNFLTVFLDFRIETINRRTRYQLRKAEERDH 357 Query: 389 ILKGLLIAYLNIDEIIAIIRNE-DKP--KPVMVSRFSLTENQVDAILNLRLRSLRKLEEY 445 +L+GLLIA ++D II +IR+ D P K +++ + L+E Q DAIL ++LR L LE Sbjct: 358 LLQGLLIALAHLDSIINLIRSAPDAPTAKGELINSYGLSEVQADAILQIQLRRLTALEAD 417 Query: 446 QIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRA 505 +I+ E + L + + +L+ ++ I E ++K F+ RRTT ++ A Sbjct: 418 KIRLEHEELQLQITDLRDILDRRERVLEIIETEAGQIKTQFATP-----RRTT---ITHA 469 Query: 506 DKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL--------SALHFKEGDSLKIALHA 557 + +I E + ++++ +G+I+ + + + + K+ D+++ L Sbjct: 470 EGEIDDIDLIANEKVLILLTQQGYIKRMPVSTFEAQNRATRGKAGAKVKDDDTIEHFLTC 529 Query: 558 HTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYD--S 610 D +L S G KAY +P G+ S G I ++ + + I + S Sbjct: 530 CDHDSVLFFSDRGVVYSLKAYQIPEGSRTS---RGTPIVQMLPIPKEEKITSIVSVSEFS 586 Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE--KMKLVVKVTGDHVAVVGENR 668 + + LV+ +KG E ++ R + +S EE +++ V + + ++G + Sbjct: 587 SEEYLVMLTKGGNIKKTALEAFSHIR-ANGLIAISLEEGDQLRWVRRAKPEDSVMIGSRQ 645 Query: 669 KLLIF---SIDQIPEMSRG-KGVRLQSYKDG 695 + I DQ+ + R +GV+ K G Sbjct: 646 GMAIHFRCDNDQMRPLGRATRGVKSMKLKTG 676 >gi|260588812|ref|ZP_05854725.1| DNA gyrase, A subunit [Blautia hansenii DSM 20583] gi|260540591|gb|EEX21160.1| DNA gyrase, A subunit [Blautia hansenii DSM 20583] Length = 828 Score = 376 bits (966), Expect = e-102, Method: Compositional matrix adjust. Identities = 224/613 (36%), Positives = 349/613 (56%), Gaps = 32/613 (5%) Query: 13 VEENV----KAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68 +EENV + V L+ +EE Y+ YA+S I RA+PD+RDG KPV RRI+++M E+ Sbjct: 1 MEENVFDKIQEVDLQKKMEESYIEYAMSVIASRALPDVRDGLKPVQRRILYSMIELNNGP 60 Query: 69 GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128 +K ARIVG+ +GK HPHGD S+Y +LV +AQ + RYPL+ G GNFG++DGD AAA Sbjct: 61 DKPHRKCARIVGDTMGKYHPHGDSSIYGALVNMAQDWSTRYPLVDGHGNFGSVDGDGAAA 120 Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188 RYTEAR+++++ +L ++++ +DF ++ + EP V PS++PNLL NGTSGIAVGMA Sbjct: 121 MRYTEARLSKISMEMLADINKNTIDFAPNFDGTEKEPTVLPSRYPNLLVNGTSGIAVGMA 180 Query: 189 TSIPSHNVQEICEAALALIDNP-----EISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243 T+IP HN++EI A + +IDN E +I++LL + GPDFPTG I+ +R I E+Y Sbjct: 181 TNIPPHNLREIVNAVVKIIDNQIEEQRETTIDELLSIVKGPDFPTGATILGTR-GIEEAY 239 Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303 R GRG RVRA +E + G I+VTE+PY V K+RLIEKIAEL+ K+I + DI D Sbjct: 240 RTGRGKIRVRAVTDIETLPNGKSQIIVTELPYMVNKARLIEKIAELVRDKKIDGITDISD 299 Query: 304 ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363 S + + R + ++++ ++ + M+ F + M L +G P+VM L +L+ Sbjct: 300 HSNREGMRICITLRRDANANVILNRLYKHTQMQDTFGVIMLAL-VGNTPKVMSLLEMLEH 358 Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSR 420 +LAH+ EV+ RR+ + + + R I+ GLL A ID+II IIR+ + K ++ Sbjct: 359 YLAHQEEVVTRRTQYDLNKAEARAHIVSGLLKALDVIDQIIKIIRSSKTRQEAKETLMDT 418 Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480 F +E Q I+N+RL L +E +++ E L + ++ ++L+ N + IR Sbjct: 419 FDFSEVQAQEIVNMRLYQLTGMERERLEKEFQELEIKIRELKAILSD----RNLLLRVIR 474 Query: 481 EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RS 532 + EI + + G R T D + + +I KE + ++ G+I RS Sbjct: 475 Q--EILAIAEKYGDDRRTAIGYDEFDIS--MEDLIPKENTVIAMTKLGYIKRMTVDNFRS 530 Query: 533 LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAI 590 + + + D ++ L T ++ ++ G+ Y + A + S G AI Sbjct: 531 QNRGGKGIKGMSTIDDDYIEELLMTTTHHYLMFFTSAGRVYRIKAYEIPEASRTARGTAI 590 Query: 591 QLLIDLNHNQDIV 603 L+ L + I Sbjct: 591 INLLQLQPEEKIT 603 >gi|124267425|ref|YP_001021429.1| DNA gyrase subunit A [Methylibium petroleiphilum PM1] gi|124260200|gb|ABM95194.1| DNA gyrase subunit A [Methylibium petroleiphilum PM1] Length = 873 Score = 376 bits (966), Expect = e-102, Method: Compositional matrix adjust. Identities = 247/754 (32%), Positives = 392/754 (51%), Gaps = 76/754 (10%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 +SL + YL YA+S I RA+PD RDG KPVHRR++ AM E+ D+ +KKSARIV Sbjct: 11 ISLEEEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHELNNDWNRPYKKSARIV 70 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGD +VYD++VR+AQ F R+ L+ GQGNFG++DGD+AAA RYTE R++++ Sbjct: 71 GDVIGKYHPHGDTAVYDTIVRMAQDFSLRHMLVDGQGNFGSVDGDNAAAMRYTEIRLSKI 130 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A +L +D+ VDF Y+ + EP+V P++ PNLL NG++GIAVGMAT+IP HN+ E Sbjct: 131 AHEMLADLDKGTVDFGPNYDGSEKEPLVMPTRLPNLLVNGSAGIAVGMATNIPPHNLNET 190 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 +A L L+ NPE SI++L+E I PDFPT GII + E YR GRG +RA+ E Sbjct: 191 VDACLHLLKNPEASIDELMEIIPAPDFPTAGIIY-GLNGVREGYRTGRGKVVMRAKCHFE 249 Query: 260 EVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318 ++ +G+ I+V EIPYQV K L+E++AEL+ K++ + I+DES + V+ R Sbjct: 250 DIDKGARQSIIVDEIPYQVNKKTLLERMAELVHEKKLEGISHIQDESDKSGMRVVIELKR 309 Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378 P++++ +++ + ++ F +NM L G+ P++ L +++ +L HRREV+ RR+ F Sbjct: 310 GEVPEVVLNNLYKQTQLQDSFGINMVALVDGQ-PKLCNLRDLVEVFLEHRREVVTRRTVF 368 Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR------------------ 420 ++ R +L+GL +A NIDE I II+N P P + + Sbjct: 369 ELRKARERGHVLEGLAVALANIDEFIEIIKN--SPTPPLAKQGLMDKSWDSSLVREMLVR 426 Query: 421 ----------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELD 452 + L+++Q IL +RL+ L LE+ +I E Sbjct: 427 AASDTPGGRDAFRPEGLPAVYGMQADGLYRLSDDQAQEILQMRLQRLTGLEQDKIIGEYK 486 Query: 453 NLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ 512 ++A + +L+ ++ I E+ VK+ F + T LG RR+ E + + T + Sbjct: 487 EVMAHIADLLDILSKPERVTTIIGEELVAVKQEFGQ-TKLGARRSVI-EHNVQELGT--E 542 Query: 513 AMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRIL 564 +I + V +S+ G++ R+ + A K+ D ++ A+T D +L Sbjct: 543 DLITPTDMVVTLSHTGYVKSQPLAEYRAQRRGGRGKQATQTKDDDWIEQLFIANTHDWML 602 Query: 565 LLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQDIVTAF-------VYDSTCKLL 615 S G+ Y L + G G+ I + L N+ I + S + Sbjct: 603 CFSNRGRVYWLKVWEVPQGGRAARGKPIVNMFPLQPNEKITVVLPLTGEFRTFPSDHYIF 662 Query: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFS 674 + ++ G E + G + + + + G H V + + K + F Sbjct: 663 MSTALGTVKKTALDEFSNPRKAGIIAVDLDEGDHLIGAALTDGKHDVMLFSDGGKAVRFD 722 Query: 675 IDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE 707 D + M R +GVR + + G +VI + E Sbjct: 723 EDDVRPMGRNARGVRGMALEPG--QNVIAMLVAE 754 >gi|256389239|ref|YP_003110803.1| DNA gyrase subunit A [Catenulispora acidiphila DSM 44928] gi|256355465|gb|ACU68962.1| DNA gyrase, A subunit [Catenulispora acidiphila DSM 44928] Length = 875 Score = 376 bits (965), Expect = e-102, Method: Compositional matrix adjust. Identities = 217/583 (37%), Positives = 336/583 (57%), Gaps = 29/583 (4%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 + + V L+ ++ YL YA+S I RA+PD+RDG KPVHRR+++AM + G + K Sbjct: 8 DRIDPVDLQTEMQRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMYDGGYRPEKGYYK 67 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 AR+VGEV+G HPHGD +YD+LVRLAQP+ R L+ G GNFG+ D AAA RYTE Sbjct: 68 CARVVGEVMGIYHPHGDSPIYDTLVRLAQPWSLRMVLVDGNGNFGSPGNDPAAAMRYTEC 127 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 +M +A +++ +DED VDFR Y+ SEPVV P++FPNLL NG++GIAVGMAT+IPSH Sbjct: 128 KMAPLAMEMVRDIDEDTVDFRPNYDGRSSEPVVLPARFPNLLVNGSTGIAVGMATNIPSH 187 Query: 195 NVQEICEAALALIDNPEISIEKLLEYII----GPDFPTGGIIVESRESIVESYRLGRGGF 250 N++E+ + + NPE + E+LLE +I GPDFPTG +IV R I ++YR GRG Sbjct: 188 NLREVNDGVQWFLQNPEATNEELLEALIERIKGPDFPTGALIV-GRRGIEDAYRTGRGSI 246 Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV- 309 +RA EE+ G C+VVTE+PYQV L KIAEL+ ++ + D+RDES+ Sbjct: 247 TMRAVVNTEEIN-GRMCLVVTELPYQVNPDNLALKIAELVKDGKVAGIADVRDESSSRTG 305 Query: 310 -RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368 R+V+ K R +++ +++ + ++ F NM L + VP+ + LD ++ W+ H+ Sbjct: 306 QRLVIVLK-RDAVAKVVLNNLYKHTQLQDSFGANMLAL-VDDVPRTLSLDAFIRHWVTHQ 363 Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTE 425 +V+ RR+ FR++ R IL GLL A IDE++A+IR D+ + ++ ++ E Sbjct: 364 IDVIVRRTRFRLRKAQERAHILVGLLKALDAIDEVVALIRRSPTVDEARSGLIELLTIDE 423 Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485 Q +AIL ++LR L LE +I++E + L+A+ ++L S ++Q ++ E++ + + Sbjct: 424 IQANAILEMQLRRLAALERQRIEAEHNELMAKIADYTAILESPERQRRIVSEELQAISDK 483 Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHS 537 + RR+ D + + +I +E + V I+ G+ RS K Sbjct: 484 YGDD-----RRSQLVPYE-GDMSI--EDLIPEEDVVVTITRGGYTRRTRTDLYRSQKRGG 535 Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL 580 + K+ D + T +L + G+ Y A L Sbjct: 536 KGVKGAQLKQDDIVDHFFVTTTHHWLLFFTNKGRVYRAKAHEL 578 >gi|118442946|ref|YP_878398.1| DNA topoisomerase IV subunit A [Clostridium novyi NT] gi|118133402|gb|ABK60446.1| DNA gyrase, A subunit [Clostridium novyi NT] Length = 970 Score = 376 bits (965), Expect = e-102, Method: Compositional matrix adjust. Identities = 212/604 (35%), Positives = 352/604 (58%), Gaps = 25/604 (4%) Query: 8 NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67 N N + N+ S+ + + YL YA+ KERA+PD+RDG KPVHRRI++ ++ Sbjct: 5 NINIPKDNNIIKASISEVMPDNYLPYAVEVAKERALPDVRDGLKPVHRRILYGAYKLKAT 64 Query: 68 FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAA 127 + KSARIVG+++GK HPHGD SVYD++V LAQ F R PLI G GN+G+IDGDSAA Sbjct: 65 PDKPYYKSARIVGDILGKYHPHGDTSVYDAMVILAQNFTTRIPLIDGHGNWGSIDGDSAA 124 Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187 A RYTEAR+T A +L+ +D++ VD + Y++ + EP V P++FPNLL NG GIAVG+ Sbjct: 125 AMRYTEARLTNAAMEMLKDIDKEVVDMVNNYSDTELEPKVLPARFPNLLVNGAFGIAVGL 184 Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247 AT+IP HN++E + +A IDN +IS ++L+ YI GPD PTGGI++ ++++ +Y G Sbjct: 185 ATNIPPHNLKETIDGCIAYIDNNDISTKELMNYIKGPDLPTGGILI-GEKALLSAYEKGE 243 Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR----IPLLEDIRD 303 G +RA+ +E++ + IV+TE PY+ KS++++ I+E+ K+ + + DIRD Sbjct: 244 GRVTLRAKTNIEKLENDRYGIVITEFPYRKNKSKMLQTISEMTADKKHSKALDAISDIRD 303 Query: 304 ESAED-VRIVLFPKNRS--LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360 ES + +R V+ K + + + +++ +F ++++ NM ++ G+ P+ + L I Sbjct: 304 ESDRNGIRAVIELKKSANIEEAERVLKYLFKKTELQCNLSFNMVAIADGK-PKTLGLKAI 362 Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---M 417 LK ++ H+++V+ RR+ ++ ++R I++G + A +DEI+ IR K + Sbjct: 363 LKYYVEHQKDVVIRRTKKELEIAEKRFHIVEGFIKAIDIMDEILKTIRASKSKKDSEENL 422 Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477 V++F + Q +AI+ L L L LE + E L + +LNS K+ + I Sbjct: 423 VNKFGFSREQAEAIVELMLYKLTGLEIKVFEKEYKELQRRINALTKILNSEKELFKVIKK 482 Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL---- 533 E+ EVKE + RRT K +++ +++ E + + ISN G+I+ + Sbjct: 483 ELNEVKENYG-----DERRTNIIHDDEKAKIDIEELILD-EDVIITISNEGYIKRVSEKY 536 Query: 534 -KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAI 590 K + + + ++EGD K L +T +++ + +G Y L N+ + + GE + Sbjct: 537 YKRINPKVEDIEYREGDFNKAILEGNTKYSLIIFTDEGNLYQLRIVNIAEMKWKEKGERL 596 Query: 591 QLLI 594 LI Sbjct: 597 DNLI 600 >gi|269954817|ref|YP_003324606.1| DNA gyrase subunit A [Xylanimonas cellulosilytica DSM 15894] gi|269303498|gb|ACZ29048.1| DNA gyrase, A subunit [Xylanimonas cellulosilytica DSM 15894] Length = 856 Score = 376 bits (965), Expect = e-102, Method: Compositional matrix adjust. Identities = 231/638 (36%), Positives = 358/638 (56%), Gaps = 54/638 (8%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 +V+ V L ++ YL YA+S I RA+PD+RDG KPVHRR+I+AM + G F K Sbjct: 19 HVEQVDLNLEMQRSYLDYAMSVIVGRALPDVRDGLKPVHRRVIYAMYDGGYRPDRGFSKC 78 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 AR+VG+V+GK HPHGD ++YD++VRL Q + RYPL++GQGNFG+ D AAA RYTE R Sbjct: 79 ARVVGDVMGKYHPHGDSAIYDAMVRLVQDWSLRYPLVAGQGNFGSPGNDPAAAPRYTECR 138 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 M +A +++ +D+D VDF+D Y+ E+ EPVV P++FPNLL NG++GIAVGMAT+IP HN Sbjct: 139 MAPIAMEMVRDIDKDTVDFQDNYDGEEQEPVVLPARFPNLLVNGSAGIAVGMATNIPPHN 198 Query: 196 VQEICEAALALIDNPEISIEKLLEYII----GPDFPTGGIIVESRESIVESYRLGRGGFR 251 ++E+ E + +PE S E+LL ++ GPDFPTG I+ ++ I E+YR GRG Sbjct: 199 LREVAEGVRWHLAHPEASREELLAALMQRVKGPDFPTGAQILGTK-GIEEAYRTGRGSIT 257 Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV-- 309 +RA VEE+ + C+VVTE+PYQV L KIA+L+ R+ + DIRDE++ Sbjct: 258 MRAVVNVEEI-QNRICLVVTELPYQVNPDNLAAKIADLVNDGRLQGIADIRDETSGRTGQ 316 Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369 R+V+ K R +++ +++ + ++ F NM L G VP+ + LD ++ W H+ Sbjct: 317 RLVIVLK-RDAVAKVVLNNLYKHTQLQDNFGANMLALVDG-VPRTLSLDAFIRHWTTHQM 374 Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTEN 426 EV+ RR+++ + ++R+ IL+G L A +D++IA+IR + D+ + ++ + E Sbjct: 375 EVIRRRTAYLLADAEKRIHILRGYLKALDVLDDVIALIRRSPDADQARAGLMELLEIDEI 434 Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486 Q +AILNL+LR L LE +I E + AE + +L ++Q + + E+ + E + Sbjct: 435 QANAILNLQLRRLAALERQRIIDEHAAIEAEITDLQDILAKPERQRSIVGEELDGIVEKY 494 Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV-------- 538 RRT D + +I +E + V I+ G+ + +S + Sbjct: 495 GDE-----RRTHILPY---DGDMSMEDLIPEEEVVVTITRGGYAKRTRSDAYRQQKRGGK 546 Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTD------GKAYTLPAGNLLSGRGH------ 586 + +E D + TT LL T+ K Y LP G+ S H Sbjct: 547 GVRGTQLREDDIVD-HFFVTTTHHWLLFFTNFGRVYRAKGYELPEGSRDSKGQHVANMLA 605 Query: 587 ---GEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKG 621 GE I ++DL YD+ L++ + +G Sbjct: 606 FQPGEHIAQVLDLRD---------YDAAEYLVLATRRG 634 >gi|50953932|ref|YP_061220.1| DNA gyrase subunit A [Leifsonia xyli subsp. xyli str. CTCB07] gi|50950414|gb|AAT88115.1| DNA gyrase subunit A [Leifsonia xyli subsp. xyli str. CTCB07] Length = 858 Score = 376 bits (965), Expect = e-102, Method: Compositional matrix adjust. Identities = 209/528 (39%), Positives = 323/528 (61%), Gaps = 20/528 (3%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + V L+ ++ YL YA+S I RA+P++RDG KPVHRR+I+AM + G AF K A Sbjct: 17 IDQVDLQSEMQRSYLDYAMSVIIGRALPEVRDGLKPVHRRVIYAMFDGGYRPDKAFSKCA 76 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+V+G+ HPHGD ++YD+LVRL QP+ RYPL GQGNFG+ D AAA RYTE +M Sbjct: 77 RVVGDVMGQFHPHGDSAIYDALVRLVQPWSLRYPLALGQGNFGSPGNDGAAAPRYTETKM 136 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 +A +++ +DED VDF+D Y+ EP V PS+FPNLL NG+ GIAVGMAT+IP HN+ Sbjct: 137 APLALEMVRDIDEDTVDFQDNYDGRTQEPSVLPSRFPNLLVNGSVGIAVGMATNIPPHNL 196 Query: 197 QEICEAALALIDNPEISIEKLLEYII----GPDFPTGGIIVESRESIVESYRLGRGGFRV 252 +E+ + AL + +PE S E+LLE +I GPDFPTG I+ + I ++YR GRG + Sbjct: 197 REVAQGALWHLAHPEASREELLEELIKRIKGPDFPTGAQILGVK-GIQDTYRTGRGSITI 255 Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV--R 310 RA +EE+ +G C+VVTE+PYQV L KIAEL+ R+ + DIRDE++ R Sbjct: 256 RAVVSIEEI-QGRVCLVVTELPYQVNPDNLAIKIAELVKDGRVGGIADIRDETSGRTGQR 314 Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370 +V+ K ++ +++ +++ + ++ F NM + + VP+ + LDG + W+ H+ E Sbjct: 315 LVIVLKRDAV-AKVVLNNLYKHTQLQENFGANMLAI-VDNVPRTLALDGFITAWVDHQIE 372 Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQ 427 V+ RR+ FR++ + R IL+G L A +DE+IA+IR D+ + + S + + Q Sbjct: 373 VIVRRTRFRLRKAEERAHILRGYLKALDALDEVIALIRRSATVDEAREGLKSLLEVDDIQ 432 Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487 DAIL ++LR L LE +I E D + + + ++L +Q + ++ E+ E+ + F Sbjct: 433 ADAILAMQLRRLAALERQKIIDEHDEIERQITEFKAILADSARQRSIVSEELTEIVDRFG 492 Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKS 535 RRT D + + +I +E + + ++ G+I+ +S Sbjct: 493 DD-----RRTEIMLGFDGDMSL--EDLIPEEEMVITVTRGGYIKRTRS 533 >gi|327182555|gb|AEA31002.1| DNA gyrase subunit A [Lactobacillus amylovorus GRL 1118] Length = 820 Score = 376 bits (965), Expect = e-102, Method: Compositional matrix adjust. Identities = 217/621 (34%), Positives = 357/621 (57%), Gaps = 38/621 (6%) Query: 8 NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67 + N + ++ V L + +L YA+S I RA+PD+RDG KPV RRI++ MSE+G+ Sbjct: 2 DENQTQDHRIRNVDLTSMMRSSFLDYAMSVIVARALPDVRDGLKPVQRRILYGMSELGVT 61 Query: 68 FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAA 127 +KKSARIVGEV+GK HPHGD S+Y ++ +AQ F RY L+ G GNFG++DGD A Sbjct: 62 PDKPYKKSARIVGEVMGKFHPHGDSSIYLAMAHMAQDFSYRYMLVDGHGNFGSVDGDEPA 121 Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187 A RYTEARM+++A +L+ ++++ +D++ Y++ ++EPVV P++ PNLL NG +GIAVGM Sbjct: 122 AMRYTEARMSKIAVEMLRDINKNTIDWQRNYDDTENEPVVLPARIPNLLVNGANGIAVGM 181 Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247 T+IP HN+ E+ L+ NP+ + + L++ I GPDFPT G I+ R I +Y G+ Sbjct: 182 TTNIPPHNLSEVISGLHMLMKNPDATTKDLMKVIPGPDFPT-GGIIMGRGGIYRAYETGK 240 Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307 G VRA+ +E G I+V+EIP+ V K+ L++KIA+L K I + +RDES + Sbjct: 241 GNIVVRAKTNIETEKSGRERIIVSEIPFMVNKAELVKKIADLAREKIIDGITGVRDESDQ 300 Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367 + R +++ ++F + M+ F +NM + G P + L +L+ +L H Sbjct: 301 TGMRITIDIRRDASASVVLNNLFKQTQMQANFGMNMVAIVDG-APHYLTLKQMLQYYLDH 359 Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLT 424 + +V+ RR+ F + + R IL+GL IA NIDEI+ IIR + D K ++SRF L Sbjct: 360 QEDVVTRRTKFELAKAEARAHILEGLRIALDNIDEIVHIIRSSHSSDIAKATLISRFGLD 419 Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484 + Q AIL++RL L LE ++++E +L A+ +L ++ I E+ ++++ Sbjct: 420 DKQSQAILDMRLVRLTGLERDKVEAEYKDLQAKIADYKDILAKPERIDQIIYDELLDIQK 479 Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSLKSHSVD---- 539 F +RRT E+ ++ +++ + +IEK+ I + +++ G+I+ + Sbjct: 480 RFGD-----KRRT---EIGASEVVSIEDEDLIEKQNILLTVTHNGYIKRMPIQEFKTQNR 531 Query: 540 ----LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNL 580 + + ++GD ++ +++ T D +L + GK Y+ LP NL Sbjct: 532 GGKGIKGMGVQDGDFIEHLIYSSTHDMLLFFTNAGKVYSKKAYEIPEYGRMAKGLPVVNL 591 Query: 581 LSGRGHGEAIQLLIDLNHNQD 601 L GE +Q +I++ N D Sbjct: 592 LQLE-KGEKVQTVINIPENAD 611 >gi|255068314|ref|ZP_05320169.1| DNA gyrase, A subunit [Neisseria sicca ATCC 29256] gi|255047433|gb|EET42897.1| DNA gyrase, A subunit [Neisseria sicca ATCC 29256] Length = 924 Score = 376 bits (965), Expect = e-102, Method: Compositional matrix adjust. Identities = 233/628 (37%), Positives = 354/628 (56%), Gaps = 65/628 (10%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 VSL + + YL YA+S I RA+PD+RDG KPVHRR+++AM E+ ++ AA+KKSARIV Sbjct: 19 VSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIV 78 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGD +VYD++VR+AQ F RY LI GQGNFG++DGD AAA RYTE RM ++ Sbjct: 79 GDVIGKYHPHGDSAVYDTIVRMAQDFSMRYVLIDGQGNFGSVDGDGAAAMRYTEIRMAKI 138 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A +L ++E+ V+F Y+ + EP+V P++FP LL NG+SGIAVGMAT+IP HN+ + Sbjct: 139 AHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPALLVNGSSGIAVGMATNIPPHNLTDT 198 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 A L L+D PE I++L+ + PDFPTG I + E Y+ GRG +R + +E Sbjct: 199 INACLRLLDEPETEIDELINILQAPDFPTGATIY-GLSGVREGYKTGRGRVVMRGKTHIE 257 Query: 260 EVGRGS--WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317 +G+ I++ EIPYQV K++L+EKI EL+ K + + D+RDES + V+ Sbjct: 258 PIGKNGEREAIIIDEIPYQVNKAKLVEKIGELVREKTLEGVSDLRDESDKSGMRVVIELK 317 Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377 R+ + ++++ ++ L+ ++ F +NM L G+ P+++ L IL E+L HRREV+ RR+ Sbjct: 318 RNENAEVVLNQLYKLTQLQDSFGINMVALVDGQ-PRLLNLKQILAEFLRHRREVVTRRTL 376 Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDKPKPV---------------MVSR- 420 FR++ I +G +A NIDE+I +I+ + D P+ M+SR Sbjct: 377 FRLKKARHEGHIAEGKAVALSNIDEMIRLIKESADAPEAKEKLLSRAWRSGLVEDMLSRT 436 Query: 421 ----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458 + L+E Q DAIL + LR+L L++ +I + N++A Sbjct: 437 DLDLRMARPEGLPANLGLQEQGYYLSEIQADAILRMSLRNLTGLDQEEIVGDYKNIMA-- 494 Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518 + ID L K + +I IRE E+ T+ G R + D A + +I + Sbjct: 495 KIIDYLDILAKPE--RITQIIRE--ELEETKTNFGDERRSEINPFGGDIA--DEDLIPQR 548 Query: 519 PITVVISNRGWIRSLKSHSVDL--------SALHFKEGDSLKIALHAHTTDRILLLSTDG 570 + V +++ G+I++ + A K+ D ++ A+T D ++ + G Sbjct: 549 EMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDYLMCFTNLG 608 Query: 571 KA-----YTLPAGNLLS-GRGHGEAIQL 592 K Y LP G S GR IQL Sbjct: 609 KCHWIKVYKLPEGGRNSRGRPINNVIQL 636 >gi|85374095|ref|YP_458157.1| DNA gyrase subunit A [Erythrobacter litoralis HTCC2594] gi|84787178|gb|ABC63360.1| type IIA topoisomeraseA subunit [Erythrobacter litoralis HTCC2594] Length = 931 Score = 376 bits (965), Expect = e-102, Method: Compositional matrix adjust. Identities = 221/597 (37%), Positives = 331/597 (55%), Gaps = 50/597 (8%) Query: 26 LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85 ++ YL YA+S I RA+PD+RDG KPVHRRI+ A E G G ++KSA+IVG+V+G Sbjct: 13 MKTSYLDYAMSVIVSRALPDVRDGLKPVHRRILFASKEGGFVAGRPYRKSAKIVGDVMGN 72 Query: 86 LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145 HPHGD ++YD+L R+ Q + R PLI GQGNFG++D D A+ RYTEAR+ +VA +L Sbjct: 73 YHPHGDSAIYDALARMTQDWSLRVPLIDGQGNFGSMDPDPPASMRYTEARLAKVANALLD 132 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 +D+D VDF D Y+ EP V P++FPNLL NG GIAVGMAT++P HN+ E+ + LA Sbjct: 133 DLDKDTVDFSDNYDGSLKEPQVLPARFPNLLVNGAGGIAVGMATNVPPHNLGEVIDGCLA 192 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265 I NP I+ E+L++YI GPDFPT +I+ + +Y GRG +RAR +EE Sbjct: 193 FIANPAITSEELMQYIPGPDFPTAPLIL-GQAGARAAYTTGRGSVLMRARHEIEEKRGDR 251 Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLFPKNRSLDPDL 324 IV T IPYQV KS L+EKIA+ KRI + DIRDES+ E VR+V+ K R P++ Sbjct: 252 KSIVFTSIPYQVGKSGLVEKIADAAKEKRIEGISDIRDESSREGVRVVVDLK-RDASPEV 310 Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384 ++ I+ + + FP NM + GR P+V+ L I++ +++ R EV+ RR+ F + Sbjct: 311 VLNQIWRYTPAQASFPANMLAIKGGR-PEVLTLRDIVQAFVSFREEVITRRTKFELNKAR 369 Query: 385 RRVEILKGLLIAYLNIDEIIAIIRNEDKPK-----------PV----------------- 416 R +L GL++A N+DE++A+IR P+ P+ Sbjct: 370 ERAHVLLGLVVAVSNLDEVVAMIRGSSNPQIAREKLRAKLWPIGDIAQYIQLIEAIEPTA 429 Query: 417 --MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQ 474 + L+E QV AIL+LRL L L +I EL L +E E+ S+L + + Sbjct: 430 DQEGGTYQLSERQVKAILDLRLHRLTALGRDEIGDELKELASEIEEYLSILADRGKLFGV 489 Query: 475 IACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI---- 530 + E+ E+K+ ++ E++ A + +I +E + V +++ G+I Sbjct: 490 LQDELVEIKDEYATP--------RVSEIAPAWDGLEDEDLIAREDMVVTVTHGGYIKRTP 541 Query: 531 ----RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG 583 R+ S + K+ D++ T + +L + G+ Y + L G Sbjct: 542 LATFRAQARGGKGRSGMATKDEDAVVELFVTSTHNPVLFFTNLGRVYRMKVWKLPEG 598 >gi|15604079|ref|NP_220594.1| DNA gyrase subunit A [Rickettsia prowazekii str. Madrid E] gi|729651|sp|P41080|GYRA_RICPR RecName: Full=DNA gyrase subunit A gi|409961|gb|AAA68146.1| gyrase A subunit [Rickettsia prowazekii] gi|3860770|emb|CAA14671.1| DNA GYRASE SUBUNIT A (gyrA) [Rickettsia prowazekii] gi|292571802|gb|ADE29717.1| DNA gyrase subunit A [Rickettsia prowazekii Rp22] gi|1093608|prf||2104274A DNA gyrase Length = 905 Score = 376 bits (965), Expect = e-102, Method: Compositional matrix adjust. Identities = 231/627 (36%), Positives = 349/627 (55%), Gaps = 48/627 (7%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 N+ V++ ++ YL YA+S I RAIPD+RDG KPVHRRII++M E G ++KS Sbjct: 8 NLVPVNIEDEMKVSYLDYAMSVIVSRAIPDVRDGLKPVHRRIIYSMYEAGNHASKPYRKS 67 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 ARIVG+V+GK HPHGD ++YDSLVR+AQ F R PL+ GQGNFG++DGD+AAA RYTE+R Sbjct: 68 ARIVGDVMGKYHPHGDSAIYDSLVRMAQDFSLRLPLVDGQGNFGSMDGDAAAAMRYTESR 127 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 M +VA +++ +D+ V F Y+ + EP V P+ FPNLL NG+ GIAVGMAT+IP HN Sbjct: 128 MAKVAHKLVEDIDKGTVSFNINYDGSEEEPSVLPAMFPNLLVNGSGGIAVGMATNIPPHN 187 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 + EI +A IDN +I I LLE + GPDFPTG +I+ I +Y GRG +R + Sbjct: 188 LGEIIDACCLYIDNHDIEILDLLEVVKGPDFPTGSMIL-GISGIRSAYLTGRGSIIMRGK 246 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315 +E VG I++TEIPY V K+RL+EKIAE++ KRI + D+RDES ++ + Sbjct: 247 AEIENVGNSRQAIIITEIPYMVNKARLVEKIAEMVKEKRIEGISDLRDESNKNGIRIFIE 306 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 + + ++++ I+ + ++T F + M L G +P+VM L ++ +++ R V+ R Sbjct: 307 LKKDVVAEVVLNQIYACTQLQTNFGVIMLALKDG-LPKVMNLKEVIAAFVSFREVVITNR 365 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSR------------ 420 + + + R IL GL IA NIDEII II+ + + K +++R Sbjct: 366 TIYLLNKARDRAHILLGLTIAISNIDEIIYIIKASNDTNLAKQELMARQWEVLDILPLIK 425 Query: 421 -------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNS 467 S TE Q AIL ++L+ L +E+ +++ +L +L + + ++L S Sbjct: 426 LVDDKVILNERGTLSFTEVQAKAILEMKLQRLTAMEKEKLEQDLKHLATDIAEYLNILAS 485 Query: 468 GKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNR 527 + + E+ +VKE F+ R T E D+ + +I++E + V ++ Sbjct: 486 RTRLLEILKEELIKVKEEFASP------RLTSIEFGEFDQDI--EDLIQREEMVVTVTLG 537 Query: 528 GWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN 579 G+I RS K S L ++ D T +L S GK Y+L Sbjct: 538 GYIKRVPLSSYRSQKRGGKGRSGLSMRDEDITTQVFVGSTHTPMLFFSNIGKVYSLKLYK 597 Query: 580 L-LSG-RGHGEAIQLLIDLNHNQDIVT 604 L LS +G G + ++ L N+ I Sbjct: 598 LPLSNPQGKGRPMVNILSLQENEHITN 624 >gi|75252690|sp|Q5YLB5|GYRA_NICBE RecName: Full=DNA gyrase subunit A, chloroplastic/mitochondrial; Flags: Precursor gi|38017093|gb|AAR07942.1| DNA gyrase A subunit [Nicotiana benthamiana] Length = 935 Score = 376 bits (965), Expect = e-102, Method: Compositional matrix adjust. Identities = 242/693 (34%), Positives = 382/693 (55%), Gaps = 37/693 (5%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 E V L E Y++YA+S + RA+PD+RDG KPVHRRI++AM E+GL +KK Sbjct: 88 ERVVLTELHKEATEAYMSYAMSVLLGRALPDVRDGLKPVHRRILYAMHELGLSSKKPYKK 147 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 AR+VGEV+GK HPHGD +VYDSLVR+AQ F R PLI G GNFG+ID D AA RYTE Sbjct: 148 CARVVGEVLGKFHPHGDTAVYDSLVRMAQDFSLRSPLIRGHGNFGSIDADPPAAMRYTEC 207 Query: 135 RMTQVAE-LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 R+ + E ++L ++++ VDF ++ EP + P++ PNLL NG SGIAVGMAT+IP Sbjct: 208 RLEALTESMLLADLEQNTVDFVPNFDNSQKEPSLLPARVPNLLLNGASGIAVGMATNIPP 267 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E+ +A ALI NPE ++++LLEY+ GPDFPTGGII+ + + E++R GRG +R Sbjct: 268 HNLGELVDALSALIHNPEATLQELLEYMPGPDFPTGGIIMGNIGIL-EAFRTGRGRVVIR 326 Query: 254 ARWCVEEVGRGS--WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRI 311 + +E + + I++ EIPYQ K+ L+EKIA+L+ K + + DIRDES Sbjct: 327 GKTDIELLDSKTKRAAIIIQEIPYQTNKASLVEKIADLVENKILEGVSDIRDESDRSGMR 386 Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371 ++ R DP +++ +++ L+ +++ F NM + G+ P++M L +L+ +L R V Sbjct: 387 IVIELKRGSDPAIVLNNLYRLTALQSSFSCNMVGILNGQ-PKLMGLKELLQAFLDFRCSV 445 Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV---SRFSLTENQV 428 + RR+ F++ R I++G+++ N+DE+I IR F L+E Q Sbjct: 446 VERRARFKLSQAQERNHIVEGIIVGLDNLDEVINTIRKASSNALAAASLRKEFELSEKQA 505 Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488 +AIL++ LR L LE + E +L + K++ LL+S KQ I E E+K F Sbjct: 506 EAILDISLRRLTALERNKFVEEGKSLRTQISKLEELLSSKKQILQLIEEEAIEIKNKF-- 563 Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL-------- 540 RR+ + D + +I E + + IS +G+++ +K + +L Sbjct: 564 ---FNPRRSMLEDTDSGDLEDID--VIPNEEMLLAISEKGYVKRMKPDTFNLQNRGTIGK 618 Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNH 598 S + D++ L D++L S G Y+ PA + S G + ++ L+ Sbjct: 619 SVGKLRVNDAMSDFLVCRAHDKVLYFSDKGTVYSSPAYKIPECSRTAAGTPLVQILSLSD 678 Query: 599 NQDI-----VTAFVYDSTCKLLVVSSKGNAFIVEES-EIIANTR-KGKTFLKVSSEEKMK 651 + I V+ F D +L V N +I + S A+ R G +++ ++++K Sbjct: 679 GERITSIIPVSEFAADQYLVMLTV----NGYIKKVSLNYFASIRCTGIIAIQLVPDDELK 734 Query: 652 LVVKVT-GDHVAVVGENRKLLIFSIDQIPEMSR 683 V + D VA+ +N +++ I + R Sbjct: 735 WVKCCSNNDFVAMASQNGMVILTPCANIRALGR 767 >gi|315037236|ref|YP_004030804.1| DNA gyrase, A subunit [Lactobacillus amylovorus GRL 1112] gi|325955727|ref|YP_004286337.1| DNA gyrase subunit A [Lactobacillus acidophilus 30SC] gi|312275369|gb|ADQ58009.1| DNA gyrase, A subunit [Lactobacillus amylovorus GRL 1112] gi|325332292|gb|ADZ06200.1| DNA gyrase subunit A [Lactobacillus acidophilus 30SC] Length = 821 Score = 376 bits (965), Expect = e-102, Method: Compositional matrix adjust. Identities = 217/621 (34%), Positives = 357/621 (57%), Gaps = 38/621 (6%) Query: 8 NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67 + N + ++ V L + +L YA+S I RA+PD+RDG KPV RRI++ MSE+G+ Sbjct: 2 DENQTQDHRIRNVDLTSMMRSSFLDYAMSVIVARALPDVRDGLKPVQRRILYGMSELGVT 61 Query: 68 FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAA 127 +KKSARIVGEV+GK HPHGD S+Y ++ +AQ F RY L+ G GNFG++DGD A Sbjct: 62 PDKPYKKSARIVGEVMGKFHPHGDSSIYLAMAHMAQDFSYRYMLVDGHGNFGSVDGDEPA 121 Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187 A RYTEARM+++A +L+ ++++ +D++ Y++ ++EPVV P++ PNLL NG +GIAVGM Sbjct: 122 AMRYTEARMSKIAVEMLRDINKNTIDWQRNYDDTENEPVVLPARIPNLLVNGANGIAVGM 181 Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247 T+IP HN+ E+ L+ NP+ + + L++ I GPDFPT G I+ R I +Y G+ Sbjct: 182 TTNIPPHNLSEVISGLHMLMKNPDATTKDLMKVIPGPDFPT-GGIIMGRGGIYRAYETGK 240 Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307 G VRA+ +E G I+V+EIP+ V K+ L++KIA+L K I + +RDES + Sbjct: 241 GNIVVRAKTNIETEKSGRERIIVSEIPFMVNKAELVKKIADLAREKIIDGITGVRDESDQ 300 Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367 + R +++ ++F + M+ F +NM + G P + L +L+ +L H Sbjct: 301 TGMRITIDIRRDASASVVLNNLFKQTQMQANFGMNMVAIVDG-APHYLTLKQMLQYYLDH 359 Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLT 424 + +V+ RR+ F + + R IL+GL IA NIDEI+ IIR + D K ++SRF L Sbjct: 360 QEDVVTRRTKFELAKAEARAHILEGLRIALDNIDEIVHIIRSSHSSDIAKATLISRFGLD 419 Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484 + Q AIL++RL L LE ++++E +L A+ +L ++ I E+ ++++ Sbjct: 420 DKQSQAILDMRLVRLTGLERDKVEAEYKDLQAKIADYKDILAKPERIDQIIYDELLDIQK 479 Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSLKSHSVD---- 539 F +RRT E+ ++ +++ + +IEK+ I + +++ G+I+ + Sbjct: 480 RFGD-----KRRT---EIGASEVVSIEDEDLIEKQNILLTVTHNGYIKRMPIQEFKTQNR 531 Query: 540 ----LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNL 580 + + ++GD ++ +++ T D +L + GK Y+ LP NL Sbjct: 532 GGKGIKGMGVQDGDFIEHLIYSSTHDMLLFFTNAGKVYSKKAYEIPEYGRMAKGLPVVNL 591 Query: 581 LSGRGHGEAIQLLIDLNHNQD 601 L GE +Q +I++ N D Sbjct: 592 LQLE-KGEKVQTVINIPENAD 611 >gi|251780766|ref|ZP_04823686.1| DNA gyrase subunit A [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243085081|gb|EES50971.1| DNA gyrase subunit A [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 969 Score = 376 bits (965), Expect = e-102, Method: Compositional matrix adjust. Identities = 215/600 (35%), Positives = 356/600 (59%), Gaps = 29/600 (4%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 + N+ V L A+ E YL YA+ KERA+PD+RDG KPVHRRI++ + + Sbjct: 11 DNNIIKVPLEEAMPENYLPYAIEVAKERALPDVRDGLKPVHRRILYGAYLLKAFPDRPYY 70 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSARIVG+++GK HPHGD SVYD++ LAQ F R PLI G GN+G+IDGDSAAA RYTE Sbjct: 71 KSARIVGDILGKFHPHGDSSVYDAMTILAQNFSTRAPLIDGHGNWGSIDGDSAAAMRYTE 130 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 AR+ ++ +L+ +D+D VD Y++ + EP V PS++PNLL NG+ GIAVG+AT+IP Sbjct: 131 ARLAPISMEMLRDIDKDTVDMVPNYSDSEFEPKVLPSRYPNLLVNGSFGIAVGLATNIPP 190 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN++E+ + LA IDN EI I++L+E+I GPD PTGGI++ + S+ +Y G G R Sbjct: 191 HNLKEVTDGVLAYIDNNEIDIKELMEHIKGPDLPTGGILI-GKNSLRSAYESGVGKVAYR 249 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR----IPLLEDIRDESAED- 308 A+ +E++ G I +TE PY+ K++L++ I+E+ +R + L+ DIRDES + Sbjct: 250 AKTNIEKLDSGRIGIAITEFPYRRNKAKLLQTISEMTGDRRHSKALELISDIRDESDRNG 309 Query: 309 VRIVLFPKNRSLDPD---LLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365 +R V+ K +S D D +++ +F ++++ NM L+ G+ P+ M L +++ ++ Sbjct: 310 IRAVIELK-KSADEDSANKILKYLFKKTELQCNISFNMVALADGK-PETMSLKNMIRHYV 367 Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFS 422 H++E++ RRS ++ +R I++G + A +DE+IA IR+ K ++ +F+ Sbjct: 368 NHQKEIVTRRSEKELEVAKKRFHIVEGFIKAIDVLDEVIATIRSSKSKKDASNNLIEKFA 427 Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482 T Q AIL L L L LE + E L ++++ +L++ K+ I E++E+ Sbjct: 428 FTAEQAQAILELMLYRLTGLEIKVFEKEYKELEKIIKRLEKILSNEKELLKVIKFELKEI 487 Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS------LKSH 536 + + R+T E K +++ +I +E + + +S G+I+ ++S+ Sbjct: 488 SDKYG-----DERKTNIIEDDAKSKIDIEELIIVEE-VMITLSKDGFIKRIPVKNYIRSN 541 Query: 537 SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLI 594 S + + ++EGD L+ + ++T D +L+ + G Y + N+ L + GE + +I Sbjct: 542 S-NPEDIEYREGDKLEYLISSNTRDSLLIFTDKGFMYQVKGINIPELKWKEKGERLDTII 600 >gi|294673551|ref|YP_003574167.1| DNA gyrase subunit A [Prevotella ruminicola 23] gi|294473256|gb|ADE82645.1| DNA gyrase, A subunit [Prevotella ruminicola 23] Length = 843 Score = 376 bits (965), Expect = e-102, Method: Compositional matrix adjust. Identities = 235/693 (33%), Positives = 378/693 (54%), Gaps = 61/693 (8%) Query: 11 TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70 T + + +++ ++ Y+ Y++S I RA+PD+RDGFKPVHRRI++ M + Sbjct: 4 TFDNDRIIKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMMNINNVSTQ 63 Query: 71 AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130 +KK AR+VGEV+GK HPHGD SVY +LVR+AQ + RY L+ GQGNFG++DGDS AA R Sbjct: 64 PYKKCARVVGEVLGKYHPHGDSSVYGALVRMAQDWNMRYTLVDGQGNFGSVDGDSPAAMR 123 Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190 YTE R++++ E I+ +D++ VD +++ EP V P+K PNLL NG +GIAVGMAT+ Sbjct: 124 YTECRLSKMGEHIMDDLDKETVDMAPNFDDSLEEPTVMPTKIPNLLVNGGNGIAVGMATN 183 Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250 +P+HN+ E+ + A IDNP+I E L++YI GPDFPTG I + + ++Y GRG Sbjct: 184 MPTHNLGEVIDGCCAYIDNPDIDTEGLMQYIPGPDFPTGAYIY-GLQGVKDAYETGRGRI 242 Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDV 309 +RA+ +E G IVVTEIPY V K+ L+ IA+L +I + ++ DES + + Sbjct: 243 VMRAKAEIES-GDTHDKIVVTEIPYGVNKADLVAYIADLANQHKIEGVANVNDESGRQGM 301 Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369 RIV+ K R + ++L+ +F ++ +++ F +N L GR P+++ L +K ++ HR Sbjct: 302 RIVVDCK-RDANANVLLNKLFKMTALQSSFSVNNIALVKGR-PRLLSLKECVKYFVEHRH 359 Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTEN 426 +V RR+ + ++ R IL+GL+IA NIDE++ IIRN P + +RF L E Sbjct: 360 DVTIRRTKYDLRKAQERAHILEGLIIAVNNIDEVVHIIRNSKTPTDAQRNLEARFELDEL 419 Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486 Q AI+++RL L L Q+ E D+L ++ +L++ ++ + +++EVKE + Sbjct: 420 QSKAIVDMRLAQLTGLRVDQLHQEFDDLQKLIAELQEILDNPERCKEVMKADLQEVKEKY 479 Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH-- 544 RRT E+ D + +P+ + IS+ G+I+ LS H Sbjct: 480 GDE-----RRT---EIIPFDHEFNAEDFYPDDPVVITISHMGYIKRTP-----LSEFHEQ 526 Query: 545 -----------FKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGE 588 ++ D + A + +L + G K Y +P G+ S G Sbjct: 527 GRGGMGSKAARHRDNDFTEYIYPATMHNTLLFFTQKGRCYWQKCYEIPEGDKNS---KGR 583 Query: 589 AIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG---KTFLKVS 645 AIQ ++++ + D+ +L + + + + ++ T++G KT L+ Sbjct: 584 AIQNMLNIEPD---------DAINAVLRIKNFNDTEFLNSHYVVFATKQGIIKKTCLEAY 634 Query: 646 SEEKMKLVVKVT---GDHVAVV----GENRKLL 671 S + V+ + GD V V G N LL Sbjct: 635 SRPRANGVIAININEGDQVVGVRLTNGHNELLL 667 >gi|297562241|ref|YP_003681215.1| DNA topoisomerase (ATP-hydrolyzing) [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296846689|gb|ADH68709.1| DNA topoisomerase (ATP-hydrolyzing) [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 828 Score = 376 bits (965), Expect = e-102, Method: Compositional matrix adjust. Identities = 236/701 (33%), Positives = 388/701 (55%), Gaps = 47/701 (6%) Query: 30 YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89 +L YA S I +RA+PD RDG KPV RRI++ M+EMGL K AR+VG+V+G+LHPH Sbjct: 29 FLEYAYSVIYQRALPDARDGMKPVQRRILYQMNEMGLRHDRGHVKCARVVGDVMGRLHPH 88 Query: 90 GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA-AAYRYTEARMTQVAELILQGVD 148 GD ++YD+LVRL+QPF R PL+ G GNFG++ GD A AA RYTEAR+ + AE ++ +D Sbjct: 89 GDTAIYDALVRLSQPFAMRVPLVDGHGNFGSLGGDDAPAAMRYTEARLDRAAEQLVASID 148 Query: 149 EDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208 E+ VDFR Y+ +++EP V P+ FPNLL NG SGIAVGMAT++ HN+ E+ AA LI Sbjct: 149 ENVVDFRPNYDGQETEPEVLPAAFPNLLVNGASGIAVGMATNMAPHNLGEVVAAARHLIA 208 Query: 209 NPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCI 268 +PE ++E+L E++ GPD PTGG IV + I ++YR GRG F+ RA +E+V + Sbjct: 209 HPEATLEELTEFVPGPDLPTGGTIV-GLDGIRDAYRSGRGTFKTRATVSIEKVSARRTGL 267 Query: 269 VVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD--ESAEDVRIVLFPKNRSLDPDLLM 326 VVTE+PY V ++I +I EL+ +K++ + D++D + + +R+V+ KN +P+ ++ Sbjct: 268 VVTELPYSVGPEKVISRIKELVQSKKLQGISDLKDLTDRTQGLRLVIELKN-GFNPEAVL 326 Query: 327 ESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRR 386 E ++ L+ ME F +N L G+ PQ + L +L+ ++ HR +V+ RRS FR R Sbjct: 327 EELYRLTPMEESFGINNVALVDGQ-PQTLGLRELLEVYVNHRLDVVRRRSEFRRAKRQER 385 Query: 387 VEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAILNLRLRSLRKLE 443 + ++ GLL+A L+ID +I++IR + + ++ + L+E Q IL LR L + + Sbjct: 386 LHLVDGLLVALLDIDRVISLIREAEDTAAARESLMGAYDLSEIQARYILETPLRRLTRFD 445 Query: 444 EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVS 503 ++++E D L E + + ++L S K+ ++ E+ +V + F+ RRT E Sbjct: 446 RMELETERDKLNKEVDALTAVLESDKKLRRLVSKEMGDVAKEFATP-----RRTQLRESD 500 Query: 504 RADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD--LSALHFKEGDSLKIALHAHTTD 561 ++ + + +P V++ G I K SV L + D++ +++ + Sbjct: 501 GVARSAVIPLEMADQPCHVLMGVHGAIGRSKGPSVPRVYEGLRTRH-DAVHVSVPTTSRS 559 Query: 562 RILLLSTDGKAYTLPAGNL--LSGRG-------HGEAIQLLIDLNHNQDIVTAFVYDSTC 612 + L++ G+ +P L L G G + + L+ ++ +V+ D++ Sbjct: 560 AVGLVTDLGRMIRVPVVELPELPDEGGDSPPLASGLDVSEFVQLDGDERVVSVVSMDASG 619 Query: 613 KLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG-----DHVAVVGEN 667 + ++G + + K +V + + VV VT + +A + Sbjct: 620 PGFALGTRGGVV----KRVSPDYPPNKDDFEVVALKDDDRVVGVTQLSTGEEDLAFITSE 675 Query: 668 RKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEG 708 +LL FS VR Q GG++ V ++ EG Sbjct: 676 AQLLRFS---------ASAVRPQGRPAGGVAGV---RLSEG 704 >gi|260911414|ref|ZP_05918005.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Prevotella sp. oral taxon 472 str. F0295] gi|260634461|gb|EEX52560.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Prevotella sp. oral taxon 472 str. F0295] Length = 871 Score = 376 bits (965), Expect = e-102, Method: Compositional matrix adjust. Identities = 237/694 (34%), Positives = 380/694 (54%), Gaps = 49/694 (7%) Query: 6 ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65 + + T+ ++ + +++ ++ Y+ Y++S I RA+PD+RDGFKPVHRRI++ M +G Sbjct: 1 MDENQTIDQDRIIKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMLGLG 60 Query: 66 LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125 +KK AR+VG+V+GK HPHGD SVY +LVRLAQ + RY L+ GQGNFG++DGDS Sbjct: 61 NTSDKPYKKCARVVGDVLGKYHPHGDSSVYGALVRLAQDWNMRYTLVDGQGNFGSVDGDS 120 Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185 AAA RYTE R++++ E I+ +D+D VD + ++ EP V P+K PNLL NG +GIAV Sbjct: 121 AAAMRYTECRLSKLGERIMDDLDKDTVDMDENFDATLQEPQVMPTKIPNLLVNGGNGIAV 180 Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245 GMAT++P+HN+ E+ + A IDNP+I E L++YI PDFPTG I + + ++Y Sbjct: 181 GMATNMPTHNLAEVLDGCCAYIDNPDIDTEGLMQYIKAPDFPTGAYIY-GLQGVKDAYET 239 Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305 GRG +RA+ +E IV++EIPY V K++LIE IA+L+ R+ + + DES Sbjct: 240 GRGRIVLRAKAEIES-DESHDKIVISEIPYGVNKAQLIENIADLVKEGRLEGISNANDES 298 Query: 306 A-EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364 + +RIV+ K R + ++++ +F ++ +++ F +N L GR P+++ L +K + Sbjct: 299 GRQGMRIVVDVK-RDANANVVLNKLFKMTQLQSSFSVNNIALVKGR-PRLLTLKECVKYF 356 Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRF 421 + HR +V RR+ + ++ R IL+GL+IA NIDE++ IIR + P + RF Sbjct: 357 VEHRHDVTIRRTKYDLKKAQERAHILEGLIIACDNIDEVVQIIRKSETPSEAQRNLEKRF 416 Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481 L E Q AI+++RL L L Q+ +E L ++ +L+ ++ + E+ E Sbjct: 417 ELDELQSKAIVDMRLSQLTGLRIEQLHAEYKELEELIARLQLILDDPEECKRVMKLELEE 476 Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL-------- 533 VKE F RRT E+ + + +P+ + +S+ G+I+ Sbjct: 477 VKEKFGDV-----RRT---EIIPDEHEFNAEDFYPNDPVVITVSHLGYIKRTPLSEFHEQ 528 Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGE 588 V + ++ D + A +L + G K Y +P G+ S G Sbjct: 529 ARGGVGSKGANTRDKDFTEYIYPATMHQTMLFFTKKGRCYWLKCYEIPEGDKTS---KGR 585 Query: 589 AIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG---KTFLKVS 645 AIQ L++++ + D V AF L V + ++ I+ T+ G KT L+ Sbjct: 586 AIQNLLNIDAD-DSVNAF--------LRVKGLNDVDFIKNHYIVFATKNGTVKKTSLEAY 636 Query: 646 SEEKMKLVVKVT---GDHVAVV--GENRKLLIFS 674 S + V +T GD V V + LLI + Sbjct: 637 SRPRTNGVNAITIAEGDEVVDVRLTNGKNLLIMA 670 >gi|237747506|ref|ZP_04577986.1| DNA gyrase subunit A [Oxalobacter formigenes HOxBLS] gi|229378857|gb|EEO28948.1| DNA gyrase subunit A [Oxalobacter formigenes HOxBLS] Length = 872 Score = 376 bits (965), Expect = e-101, Method: Compositional matrix adjust. Identities = 227/612 (37%), Positives = 348/612 (56%), Gaps = 63/612 (10%) Query: 19 AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78 ++SL + + YL YA+S I RA+PD+RDG KPVHRR++ M EM + + K AR+ Sbjct: 10 SISLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFGMHEMNNTWNRPYVKCARV 69 Query: 79 VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138 VGEV+GK HPHGDQS+YD+LVR+AQ F RY L+ GQGNFG+IDGD+AAA RYTE R+ + Sbjct: 70 VGEVMGKYHPHGDQSIYDTLVRMAQDFSLRYTLVDGQGNFGSIDGDNAAAMRYTECRLDK 129 Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198 +A+ +L +D++ +DF Y+ ++ EP V P++ PNLL NG+SGIAVGMAT+IP HN+ E Sbjct: 130 IADEMLADIDKETIDFVPNYDGKEKEPSVLPTRIPNLLINGSSGIAVGMATNIPPHNLAE 189 Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258 + +L L+ +P+ +I++L++ I PDFPTGG+I + E YR GRG +RAR Sbjct: 190 VIRGSLHLLHHPDCTIDELIDIIPAPDFPTGGLIY-GVTGVREGYRTGRGRVVMRARTHF 248 Query: 259 EEVGR-GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317 EE GR G I++ E+PYQV K L+E+IAE + K++ + DIRDES + V+ Sbjct: 249 EEHGRDGRQAIIIDELPYQVNKKTLLERIAESVREKKLDGISDIRDESDKSGMRVVIELK 308 Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377 R+ ++++ ++F + ++ F +NM L G+ P+++ L +L+ +LAHRREV+ RR+ Sbjct: 309 RNEVAEVVLNNLFKQTQLQDTFGMNMVALVDGQ-PKLLNLKQMLECFLAHRREVVTRRTI 367 Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV-----------------MVSR 420 F ++ R +L+GL +A NID+ IAIIR P P+ M+ R Sbjct: 368 FELRKARERGHVLEGLAVALANIDDFIAIIRAAPTP-PIARQELMARSWDSSLVRSMLER 426 Query: 421 ----------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELD 452 + L+E Q IL +RL+ L LE+ +I +E Sbjct: 427 TGNEHTNSVDDFRPEGLPKIYGIQSDGLYKLSEEQATEILQMRLQRLTGLEQDRILNEYG 486 Query: 453 NLLAEKEKIDSLLNSGKQQWNQIACEIREV-KEIFSKSTDLGRRRTTFCEVSRADKATLQ 511 +++ + ++ +L ++ I E+ V E K+ D R + E++ +D T Sbjct: 487 DVMRQIAELLDILARPERVLEIIDTELTAVIGEYAEKAKDT---RRSEIELNASDLET-- 541 Query: 512 QAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRI 563 + +I + + V +S+ G+I R+ K A KE D + A+T D I Sbjct: 542 EDLITPQDMVVTLSHSGYIKSQPLSEYRAQKRGGRGRQATSTKEDDWVDQLFIANTHDYI 601 Query: 564 LLLSTDGKAYTL 575 L S G+ Y L Sbjct: 602 LCFSDRGRMYWL 613 >gi|261368838|ref|ZP_05981721.1| DNA gyrase, A subunit [Subdoligranulum variabile DSM 15176] gi|282569107|gb|EFB74642.1| DNA gyrase, A subunit [Subdoligranulum variabile DSM 15176] Length = 856 Score = 376 bits (965), Expect = e-101, Method: Compositional matrix adjust. Identities = 257/768 (33%), Positives = 407/768 (52%), Gaps = 68/768 (8%) Query: 7 SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66 + ++E +VK +E +L Y++S I RA+PD+RDG KPVHRRI++ M E G Sbjct: 10 GSGTKVIERDVKQ-----EIETAFLDYSMSVIVSRALPDVRDGLKPVHRRILYTMHERGN 64 Query: 67 DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126 D ++KSA VG V+G HPHGD SVYD++VRLAQ F RYPL+ GQGNFG++DGD Sbjct: 65 DPQHPYRKSADTVGAVLGSYHPHGDASVYDAMVRLAQDFSLRYPLVDGQGNFGSVDGDPP 124 Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186 AAYRYTEARM+++A +L +++D +D+ ++E EP V PS+FPNLL NG+ GIAVG Sbjct: 125 AAYRYTEARMSKIACEMLTDIEKDTIDWDPNFDETKKEPHVLPSRFPNLLVNGSQGIAVG 184 Query: 187 MATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLG 246 MAT+IP HN++E+ AL+DNP+I + L+E++ GPDFPTGGII+ R I +Y G Sbjct: 185 MATNIPPHNLREVVAGMCALMDNPDIDLAGLMEFVKGPDFPTGGIIM-GRSGIRAAYATG 243 Query: 247 RGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA 306 RG +R R + E G + I++TEIPY V K+RLIE IA+L+ KRI + D+ DES+ Sbjct: 244 RGKITLRGRAEIVEKKNGRYEILITEIPYMVNKTRLIESIADLVKDKRIEGISDLNDESS 303 Query: 307 E--DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364 ++IV+ K + +P +++ ++ + ++ + M L G VP++M L +++ + Sbjct: 304 SRTGMKIVIEIK-KDANPQVVLNQLYRYTQLQDTVGVIMLALDDG-VPKIMSLKTVMERY 361 Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR----NEDKPKPVMVSR 420 + + EV+ RR++F ++ R IL+GL A +DEIIA IR + + ++ Sbjct: 362 IDFQMEVIRRRTAFDLKKAQEREHILEGLRKAVDIVDEIIATIRACKGGFAEARQAVMDN 421 Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480 F E Q DAI+ L+L L LE +I+ EL L +L++ + + +++ Sbjct: 422 FGFDELQADAIVKLQLGRLAGLEILKIEQELGELREAIADYKDILSNDEHVKRIVKTDLQ 481 Query: 481 EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSV 538 + + + RRT+ VS + +I +E +++ G+I+ +L ++ Sbjct: 482 TLADKYGDE-----RRTSIEAVS---GEVDIEDLIPEETCIFTLTHEGYIKRTTLDTYQA 533 Query: 539 D------LSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGH- 586 + + K+ D + T D +L ++ G K Y +P G+ + H Sbjct: 534 QNRGGRGVQGMTQKDDDFTEELFVGSTHDYMLFMTDQGRVYRLKGYQVPEGSRTAKGSHI 593 Query: 587 --------GEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG 638 GE + L++ + D ++ T + L+ + + F N RK Sbjct: 594 VNLLQLQEGEKVTLMLQQSAKADEDNTYLTMVTRQGLIKRTPLSQF--------RNIRKA 645 Query: 639 KTFLKVSSEEKMKLV---VKVTGDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKD 694 + + E LV + GD + V + + F+ M R G GVR+ ++ Sbjct: 646 G-LIAIGLNEGDSLVWSHLTGGGDEIIVATHDGAAIHFTESGARAMGRTGHGVRVIRLRE 704 Query: 695 GGISDVICFKICE-GLTWI----DSAGRSYNRSENDLLGWLGKRGGVG 737 G VI +C G T + D GR RS D + KRGG+G Sbjct: 705 GDY--VIGAGVCRPGATVLTITEDGKGR---RSRVDDY-RITKRGGLG 746 >gi|21222281|ref|NP_628060.1| DNA gyrase subunit A [Streptomyces coelicolor A3(2)] gi|19858823|sp|P35885|GYRA_STRCO RecName: Full=DNA gyrase subunit A gi|8247655|emb|CAB92993.1| DNA gyrase subunit A [Streptomyces coelicolor A3(2)] Length = 857 Score = 375 bits (964), Expect = e-101, Method: Compositional matrix adjust. Identities = 221/582 (37%), Positives = 336/582 (57%), Gaps = 34/582 (5%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 V+ V L ++ YL YA+S I RA+PD+RDG KPVHRR+++AM + G F K A Sbjct: 13 VEPVGLETEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMYDGGYRPERGFYKCA 72 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+V+G HPHGD S+YD+LVRLAQP+ R PL+ GNFG+ D AAA RYTE +M Sbjct: 73 RVVGDVMGNYHPHGDSSIYDALVRLAQPWSMRMPLVDSNGNFGSPGNDPAAAMRYTECKM 132 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 ++ +++ +DE+ VDF D Y+ EP V P++FPNLL NG++GIAVGMAT+IP HN+ Sbjct: 133 APLSMEMVRDIDEETVDFTDNYDGRSQEPTVLPARFPNLLINGSAGIAVGMATNIPPHNL 192 Query: 197 QEICEAALALIDNPEISIEKLLEYII----GPDFPTGGIIVESRESIVESYRLGRGGFRV 252 +E+ A ++N E S E+LL+ +I GPDFPTG ++V R+ I E+YR GRG + Sbjct: 193 REVAAGAQWYLENYEASHEELLDALIERIKGPDFPTGALVV-GRKGIEEAYRTGRGSITM 251 Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV--R 310 RA VEE+ + C+VVTE+PYQ L +KIA+L+ ++ + D+RDE++ R Sbjct: 252 RAVVEVEEI-QNRQCLVVTELPYQTNPDNLAQKIADLVKDGKVGGIADVRDETSSRTGQR 310 Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370 +V+ K R +++ +++ +D+++ F NM L G VP+ + LD ++ W+ H+ E Sbjct: 311 LVIVLK-RDAVAKVVLNNLYKHTDLQSNFGANMLALVDG-VPRTLSLDAFIRHWVNHQIE 368 Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQ 427 V+ RR+ FR++ + R IL+GLL A IDE+IA+IR D + ++ + E Q Sbjct: 369 VIVRRTRFRLRKAEERAHILRGLLKALDAIDEVIALIRRSDTVEIARGGLMDLLEIDEIQ 428 Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487 +AIL ++LR L LE +I E D L A+ + + +L S +Q ++ E+ + E + Sbjct: 429 ANAILEMQLRRLAALERQKIVREHDELQAKITEYNEILASPVRQRGIVSEELTALVEKY- 487 Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVD 539 G R T D + + +I +E I V ++ G+I R+ K Sbjct: 488 -----GDDRKTKLIPYEGDMSI--EDLIAEEDIVVTVTRGGYIKRTKTDDYRAQKRGGKG 540 Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLP 576 + KE D + + T +L + G KAY LP Sbjct: 541 VRGTKLKEDDIVNHFFVSTTHHWLLFFTNKGRVYRAKAYELP 582 >gi|303236064|ref|ZP_07322667.1| DNA gyrase, A subunit [Prevotella disiens FB035-09AN] gi|302483937|gb|EFL46929.1| DNA gyrase, A subunit [Prevotella disiens FB035-09AN] Length = 867 Score = 375 bits (964), Expect = e-101, Method: Compositional matrix adjust. Identities = 249/786 (31%), Positives = 415/786 (52%), Gaps = 63/786 (8%) Query: 6 ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65 + + T+ ++ + +++ ++ Y+ Y++S I RA+PD+RDGFKPVHRRI+ M +G Sbjct: 1 MDENQTIDQDRILKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILFGMRGIG 60 Query: 66 LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125 +KK AR+VGEV+GK HPHGD SVY +LVR+ Q + RY L+ GQGNFG++DGDS Sbjct: 61 NFSNQPYKKCARVVGEVLGKYHPHGDSSVYGALVRMGQEWNMRYKLVDGQGNFGSVDGDS 120 Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185 AA RYTE R+ ++ E ++ ++++ VD +++ EP V P+K PNLL NG +GIAV Sbjct: 121 PAAMRYTECRLAKMGEHVMDDIEKETVDMVSNFDDTLKEPSVMPTKIPNLLVNGGNGIAV 180 Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245 GMAT++P+HN+ E+ + A IDNPEI++E+L++YI PDFPTG I + + ++Y Sbjct: 181 GMATNMPTHNLSEVLDGCCAYIDNPEITVEELMQYIPAPDFPTGAYIY-GLQGVKDAYET 239 Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305 GRG +RA+ +E IVVTEIPY V K++LIE IA+L+ ++ + ++ DE+ Sbjct: 240 GRGRIIMRAKAEIESDDTHDK-IVVTEIPYGVNKAQLIEYIADLVKEGKLEGISNVNDET 298 Query: 306 A-EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364 + +RIV+ K R + ++++ +F ++ +++ F +N L GR P+++ L +K + Sbjct: 299 GRQGMRIVVDVK-RDANANIILNKLFKMTALQSSFSVNCIALVKGR-PRLLSLQECVKYF 356 Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RF 421 + HR +V RR+ F ++ R IL+GL+IA NIDE++ IIR P + RF Sbjct: 357 VEHRHDVTIRRTQFDLKKAQERAHILEGLIIACDNIDEVVRIIRASQTPADAQANLEKRF 416 Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481 L + Q AI+++RL L L ++ +E D ++ + + +LN+ ++ + E++E Sbjct: 417 DLDKLQSKAIVDMRLSQLTGLRMEELHAEYDEIMQTIKDLQEILNNPERCKEVMKEELQE 476 Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR-----SLKSH 536 VKE + RRT E+ + + +P+ + IS+ G+I+ K Sbjct: 477 VKEKYGDV-----RRT---EIIPDEHEFNAEDFYPNDPVVITISHLGYIKRTPLADFKEQ 528 Query: 537 S---VDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGE 588 + V +E D + A +L + G K Y +P G+ + G Sbjct: 529 ARGGVGSKGARTREKDFTEFIYPATMHQTMLFFTKKGRCFWMKCYDIPEGDKTA---KGR 585 Query: 589 AIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG---KTFLKVS 645 AIQ ++ L+ + D V AF L + + ++ ++ T+ G KT L+ Sbjct: 586 AIQNMLALDPD-DSVNAF--------LRIQGLNDEEFLDSHYVVFATKCGLVKKTSLRHY 636 Query: 646 SEEKMKLVVKVT---GDHVA---VVGENRKLLI---------FSIDQIPEMSR----GKG 686 S + V+ + GD V + N +L+I F D + M R +G Sbjct: 637 SRPRTNGVIAININEGDEVVDVRLTNGNNELIIANRNGRACRFHEDAVRTMGRVSTGVRG 696 Query: 687 VRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPR 746 +RL + G+ +I E T + + Y + L RGG G + Sbjct: 697 MRLDDDGEDGVIGMIVVNDTEKETVMVVSEEGYGKRSMVEDYRLTNRGGKGVKTLNITEK 756 Query: 747 SGKFLS 752 +GK ++ Sbjct: 757 TGKLVA 762 >gi|9230565|gb|AAF85903.1| topoisomerase IV subunit A [Streptococcus pneumoniae] Length = 823 Score = 375 bits (964), Expect = e-101, Method: Compositional matrix adjust. Identities = 229/709 (32%), Positives = 399/709 (56%), Gaps = 33/709 (4%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 N++ +SL + ER+ Y+ I++RA+PD+RDG KPV RRI+++M++ G F +++KS Sbjct: 3 NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDGNTFDKSYRKS 62 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 A+ VG ++G HPHGD S+YD++VR++Q + R L+ GN G++DGD AA RYTEAR Sbjct: 63 AKSVGNIMGNFHPHGDFSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 ++++A +LQ +++ V F +++ + EP V P+ FPNLL NG++GI+ G AT IP HN Sbjct: 123 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 182 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 + E+ +AA+ +ID+P ++KL+E++ GPDFPTGGII + R+ I ++Y G+G VR++ Sbjct: 183 LAEVIDAAVYMIDHPTAKVDKLMEFLPGPDFPTGGII-QGRDEIKKAYETGKGRVVVRSK 241 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315 +E++ G IV+TEIPY++ K+ L++KI E+ + ++ + +RDES D + F Sbjct: 242 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDEVRVNNKVAGIAQVRDESDRDGLRIAFE 301 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 + + +L++ +F +D++ + NM + P+ + + IL ++AHRREV+ R Sbjct: 302 LKKDANTELVLNYLFKYTDLQINYNFNMVAID-NFTPRQVGIVPILSSYIAHRREVILAR 360 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432 S F + ++R+ I++GL+ +DE+IA+IR N+ K + + TE Q +AI+ Sbjct: 361 SRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIV 420 Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492 L+L L + ++ E L + + +++ + +N + E+REVK+ F+ Sbjct: 421 TLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP--- 477 Query: 493 GRRRTTFCEVSRA---DKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FK 546 R +T + ++A D A+L I +E V ++ G+I+ S S L + Sbjct: 478 --RLSTLEDTAKAIEIDTASL----IAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKR 531 Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIV 603 + D L A TT +L+ ++ G P L R GE + Q + + N++I+ Sbjct: 532 DDDRLIFAQAVKTTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEIL 591 Query: 604 TAFV---YDSTCKLLVVSSKGNAFIVEESEIIA-NTRKGKT--FLKVSSE-EKMKLVVKV 656 V +D V+ G VE E T K KT + K+ E +++ V + Sbjct: 592 YVEVVDQFDDATTYFAVTRLGQIKRVERKEFTPWRTYKSKTVKYAKLKDETDQIVAVAPI 651 Query: 657 TGDHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDGGI--SDVIC 702 D V ++ N L F+I+++P + ++ GV+ + K+ + S IC Sbjct: 652 KLDDVLLISRNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSAFIC 700 >gi|172039314|ref|YP_001805815.1| DNA gyrase subunit A [Cyanothece sp. ATCC 51142] gi|171700768|gb|ACB53749.1| DNA gyrase A subunit [Cyanothece sp. ATCC 51142] Length = 862 Score = 375 bits (964), Expect = e-101, Method: Compositional matrix adjust. Identities = 220/598 (36%), Positives = 342/598 (57%), Gaps = 46/598 (7%) Query: 11 TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70 T+ ++ + L + YL YA+S I RA+PD RDG KPVHRRI++AM E+GL Sbjct: 2 TIPQDRIIPTDLSNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTPDR 61 Query: 71 AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130 F+K AR+VGEV+GK HPHGD +VYD+LVR+AQ F R PLI G GNFG++D D AA R Sbjct: 62 PFRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRSPLIEGHGNFGSVDNDPPAAMR 121 Query: 131 YTEARMTQVA-ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189 YTE R+ ++ +L+ ++ D VDF D ++ EP+V P++ P LL NG+SGIAVGMAT Sbjct: 122 YTECRLQALSTNALLRDIEADTVDFADNFDGSQQEPIVLPARVPQLLLNGSSGIAVGMAT 181 Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249 +IP HN+ E+ + +ALI NP++S ++L++ I GPDFPTGG I+ R I ++Y GRG Sbjct: 182 NIPPHNLGELIDGTIALIHNPDLSEKELIKIIPGPDFPTGGQIL-GRSGIHDAYMTGRGS 240 Query: 250 FRVRARWCVEEV---GRGSW-CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305 +R +E + GR I++T++PYQ K+ LIE+IA+L+ KRI + DIRDES Sbjct: 241 ITMRGVAQIETIEQRGRPDREAIIITQLPYQTNKAALIERIADLVNEKRIDGISDIRDES 300 Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365 D V+ R P +++ +I+ + ++ F NM L G PQ++ + L+ +L Sbjct: 301 DRDGMRVVIELKRDAYPRVVLNNIYKQTPVQGNFGANMLALVNGE-PQLLTIKDFLQVFL 359 Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFS 422 R E + RR+ + ++ + R +L+GLLIA N+D +I +IR + K +V F Sbjct: 360 DFRVETITRRTQYELRKAEERDHLLQGLLIALDNLDAVIQLIRRAADTSSAKDELVQEFG 419 Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSE----------LDNLLAEKEKIDSLLNSGKQQW 472 L+ Q DAIL ++LR L LE +I +E L ++LA +E+I++++ Sbjct: 420 LSPVQADAILQMQLRRLTALEAEKIHAEHEELQLKIADLKDILARRERIEAIIED----- 474 Query: 473 NQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS 532 E+ ++K I + RRT E+ D + +I E ++++ +G+I+ Sbjct: 475 -----ELTQIKTIHATP-----RRT---EIVHDDGEIVDTDLIANEQAIILLTEQGYIKR 521 Query: 533 LKSHSVDL--------SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582 + + + +A K+ D ++ L D++L S G Y + A + S Sbjct: 522 MPVSTFEAQQRATRGKAAAKIKDDDVVEHFLTCCDHDQVLFFSDRGVVYAVNAYQIPS 579 >gi|187778655|ref|ZP_02995128.1| hypothetical protein CLOSPO_02250 [Clostridium sporogenes ATCC 15579] gi|187772280|gb|EDU36082.1| hypothetical protein CLOSPO_02250 [Clostridium sporogenes ATCC 15579] Length = 956 Score = 375 bits (964), Expect = e-101, Method: Compositional matrix adjust. Identities = 219/616 (35%), Positives = 363/616 (58%), Gaps = 30/616 (4%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 + N+ A L A+ E YL YA+ KERA+PD+RDG KPV RRI++ + + Sbjct: 10 DNNIVAFPLEEAMPENYLPYAVEVAKERALPDVRDGLKPVQRRIVYGSYMLKAFPDKPYY 69 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSARIVG+++GK HPHGD SVYD++V LAQ F R P+I G GN+G+ DGDSAAA RYTE Sbjct: 70 KSARIVGDILGKYHPHGDSSVYDAMVILAQSFTTRMPIIDGHGNWGSQDGDSAAAMRYTE 129 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 AR+T +A +++ +D+D V+ D Y+ + EP V P+KFPN+L NG GIAVG+AT+IP Sbjct: 130 ARLTPIAMEMIRDIDKDVVNMVDNYSNSEKEPEVLPAKFPNILVNGAFGIAVGLATNIPP 189 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E+ + LA ID EI+ ++LL YI GPD PTGG+I+ + S++ +Y G G +R Sbjct: 190 HNLGEVIDGTLAYIDKNEITTKELLNYIKGPDLPTGGVII-GKNSMLSAYETGEGRVTLR 248 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR----IPLLEDIRDESAEDV 309 A+ +E++ G IV+TE P++ K++L++ I+E+ K+ + + DIRDES + Sbjct: 249 AKTTIEKLENGRLAIVITEFPFRKNKAKLLQFISEMTADKKHSKALENITDIRDESDRNG 308 Query: 310 RIVLFPKNRSLDPDLL---MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366 + + + D++ ++ ++ +D+++ NM L+ G+ P+ + L +LK ++ Sbjct: 309 TRAVIEFKKIVTEDVVEKTLKYLYKKTDLQSNISFNMVALAEGK-PKTLGLKAMLKYYVE 367 Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSL 423 H++EV+ R++ ++ ++R I++G + A +DEII IR K ++ +FS Sbjct: 368 HQKEVVTRKTKRELEIAEKRFHIVEGFIKAIGIMDEIIKTIRESKSKKNARENLMEKFSF 427 Query: 424 TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483 T+ Q +AIL L L L LE + E L K+ +L+S K+ I E+ EVK Sbjct: 428 TDIQAEAILELMLYKLTGLEIVAFEKEYKELEKLINKLKKILSSEKELLKVIKKELIEVK 487 Query: 484 EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSH---SV 538 E ++ +RRT+ E K +++ ++E++ + V +SN G+ + +LKS+ S Sbjct: 488 ETYN-----DKRRTSIIEDDEKAKIDIEEIIVEED-VVVTLSNEGFTKRIALKSYNRSSA 541 Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQL-----L 593 ++ + ++EGD + + +T D + L++ +G Y + N+ + + ++L Sbjct: 542 NVEDIEYREGDFNRFLIQCNTKDTLCLVTKEGNMYQIKVINIPEFKWKEKGVKLDEIIKT 601 Query: 594 IDLNHNQDIVTAFVYD 609 IDL ++ I+ AF D Sbjct: 602 IDL--SETIIEAFSID 615 >gi|309811389|ref|ZP_07705176.1| DNA gyrase, A subunit [Dermacoccus sp. Ellin185] gi|308434696|gb|EFP58541.1| DNA gyrase, A subunit [Dermacoccus sp. Ellin185] Length = 931 Score = 375 bits (964), Expect = e-101, Method: Compositional matrix adjust. Identities = 217/592 (36%), Positives = 338/592 (57%), Gaps = 34/592 (5%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 V + L ++ Y+ YA+S I RA+PD+RDG KPVHRRI++AM + G + K + Sbjct: 71 VDPIDLNAEMQRSYIEYAMSVIVSRALPDVRDGLKPVHRRIVYAMYDGGYRPDRGYNKCS 130 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+V+G+ HPHGD ++YD+LVRL QP+ RYPL+ GQGNFG+ D AAA RYTE RM Sbjct: 131 RVVGDVMGQYHPHGDSAIYDALVRLVQPWSMRYPLVDGQGNFGSPGNDGAAAPRYTECRM 190 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 +A +++ + E+ VDF Y+ + +P V PS+FPNLL NG++GIAVGMAT IP HN+ Sbjct: 191 APLAMELVRDIHENTVDFEPNYDGKTLQPSVLPSRFPNLLVNGSAGIAVGMATQIPPHNL 250 Query: 197 QEICEAALALIDNPEISIEKLLE----YIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252 +E+ +AA L+ NPE S E LLE I GPDFPTG +I+ R + ++YR GRG + Sbjct: 251 REVADAAQWLLANPEASREALLEECLRRIPGPDFPTGALIMGKR-GVEDAYRTGRGSITM 309 Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV--R 310 RA VEE+ +G C+VVTE+PYQV L EKIA L+ ++ + DIRDE++ R Sbjct: 310 RAVVNVEEI-QGRQCLVVTELPYQVNPDALAEKIAMLVKDGKMAGIADIRDETSGRTGQR 368 Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370 +V+ K ++ +++ +++ + ++ F NM L G VP+ +P+ ++ W+ H+ + Sbjct: 369 LVIVLKRDAI-AKVVLNNLYKHTQLQQNFGANMLALVDG-VPRTLPISAFIRYWVEHQID 426 Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQ 427 V+ RR+ FR+ ++R+ IL+GLL A +DE+IA+IR D + ++ + E Q Sbjct: 427 VIVRRTQFRLDEAEKRIHILRGLLKALDMLDEVIALIRRSPTVDDARTGLIELLDIDEIQ 486 Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487 +AIL ++LR L LE +I + D L ++ + +L ++Q ++ E+ E+ E + Sbjct: 487 ANAILEMQLRRLAALERQRIIEQHDELQSKIDDYKDILAKPERQRQIVSDELAEIVEKYG 546 Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVD 539 RR+ D + +I +E + V I+ G++ RS + Sbjct: 547 DD-----RRSQIVPF---DGDMNMEDLIPEEDVVVTITRGGYVKRTKVSEYRSQRRGGKG 598 Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGH 586 + + D + T D +L + G K Y LP G+ S H Sbjct: 599 VRGATLRGDDVVGHFFTTSTHDWLLFFTNAGRVYRTKGYELPEGSRDSKGQH 650 >gi|282862344|ref|ZP_06271406.1| DNA topoisomerase (ATP-hydrolyzing) [Streptomyces sp. ACTE] gi|282562683|gb|EFB68223.1| DNA topoisomerase (ATP-hydrolyzing) [Streptomyces sp. ACTE] Length = 818 Score = 375 bits (964), Expect = e-101, Method: Compositional matrix adjust. Identities = 210/523 (40%), Positives = 320/523 (61%), Gaps = 15/523 (2%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 EE + + + ++ +L YA S I RA+PD RDG KPVHRRI+ M+EMGL + Sbjct: 15 EEKILDIDVVDEMQGSFLEYAYSVIYSRALPDARDGMKPVHRRIVSQMNEMGLRPDRGYV 74 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYT 132 K AR+VGEV+GKLHPHGD S+YD+LVR+AQPF R PL+ G GNFG++ + D AA RYT Sbjct: 75 KCARVVGEVMGKLHPHGDASIYDALVRMAQPFSMRLPLVDGHGNFGSLGNDDPPAAMRYT 134 Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192 E RM L+ + +DED VD++ Y+ ++ EPVV P+ +PNLL NG SGIAVGMAT++P Sbjct: 135 ECRMADATSLMTESIDEDTVDYQSNYDGQEREPVVLPAAYPNLLVNGASGIAVGMATNMP 194 Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252 HN+ E+ AA LI +P ++ L+ ++ GPD PTGG IV I ++Y GRG F++ Sbjct: 195 PHNLGEVIAAARHLIRHPNADLDALMRFVPGPDLPTGGRIV-GLGGIKDAYASGRGTFKI 253 Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD--ESAEDVR 310 RA +E V +VVTE+P+ V ++I KI +L+ AK++ + D++D + +R Sbjct: 254 RATVAIESVTARRKGLVVTELPFSVGPEKVIAKIKDLVGAKKLQGIADVKDLTDREHGLR 313 Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370 +V+ KN P+ ++E ++ L+ ME F +N L G+ P + L +L+ +L HR E Sbjct: 314 LVIEVKN-GFVPEAVLEQLYKLTPMEESFGINNVALVDGQ-PLTLGLKELLEVYLDHRFE 371 Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQ 427 V+ RRS FR R+ +++GLL+A L+IDE+I +IR+ D + K ++ RFSL+E Q Sbjct: 372 VVRRRSEFRRTKRRDRLHLVEGLLVALLDIDEVIRLIRDSDNSAQAKERLMERFSLSEIQ 431 Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487 IL+ LR L + + +++SE D L E + ++L S + ++ E+ V + F Sbjct: 432 TQYILDTPLRRLTRFDRIELESERDRLNDEIAALTAILESDAELRKLVSSELAAVAKKF- 490 Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI 530 TD RRT E + + A++ + +P V++S+ G + Sbjct: 491 -GTD---RRTVLLESAGSQVASVPLE-VADDPCRVLLSSTGLL 528 >gi|149196296|ref|ZP_01873351.1| DNA gyrase subunit A [Lentisphaera araneosa HTCC2155] gi|149140557|gb|EDM28955.1| DNA gyrase subunit A [Lentisphaera araneosa HTCC2155] Length = 859 Score = 375 bits (964), Expect = e-101, Method: Compositional matrix adjust. Identities = 222/598 (37%), Positives = 347/598 (58%), Gaps = 37/598 (6%) Query: 4 DNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63 DN + +T+ + ++ + L + YL Y++S RAIPD+RDG KP RR++ AM + Sbjct: 3 DNQQDFSTVTPQGIEKL-----LSDAYLQYSMSVNVGRAIPDVRDGLKPGMRRVLFAMDK 57 Query: 64 MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123 + L G+++ K AR+VG+VIGK HPHGD SVYD++VR+AQ F R LI GQGNFG+IDG Sbjct: 58 LNLRKGSSYMKCARVVGDVIGKYHPHGDGSVYDTMVRMAQDFSMRGMLIDGQGNFGSIDG 117 Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183 DSAAAYRYTE RM ++AE +L +D++ VD + T++ +EP V P+++PNLL NGT+GI Sbjct: 118 DSAAAYRYTECRMERLAEELLTDLDKNTVDMQPTFDGSQNEPTVLPARYPNLLVNGTTGI 177 Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243 VGMATSIP HN+ E+ A +AL+D P I+IE++++++ GPDFPT GI + + I Y Sbjct: 178 GVGMATSIPPHNLGEVINATVALLDQPSITIEEMMQHLPGPDFPTAGISI-GFDGIRRLY 236 Query: 244 RLGRGGFRVRARW-CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302 GRGG +R R +E+ GR IV+TEIPY V K +++KIAEL+ K I + + Sbjct: 237 ETGRGGVHLRGRAEIIEKNGREQ--IVITEIPYAVNKENMVKKIAELVNNKVITGISSLN 294 Query: 303 DESAEDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360 DES+ V R+V+ K ++ +++ ++ + + V+ + P+ + L + Sbjct: 295 DESSSRVGIRVVVGIKTNAM-ATVVINQLYKHTQLAVSIGCQFLVVD-NKQPKTLNLKQL 352 Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVM 417 L+ +L HR EV+ RR F ++ +RR IL+GLL A +IDE+I IIR N + + Sbjct: 353 LQAYLDHRLEVITRRIKFELEKAERRAHILEGLLKAVDHIDEVIKIIRASTNREDAHNQL 412 Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477 RF L+ Q AIL++RL L L ++ +E + L+ LL + + + + + Sbjct: 413 KERFELSNEQAKAILDMRLSQLTGLAIDELTAEYEELMKRIAHYRELLANRQMRLDVVKE 472 Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSH- 536 E+ EV++ F+ RRT E+ ++ + +I + T+ ISN G+I+ + + Sbjct: 473 ELIEVRDKFADE-----RRT---EMRPGERDINYEDLIARASATITISNEGYIKRVPTEI 524 Query: 537 -------SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLS 582 + + K+ D +K A T D I+ + G K Y +P +S Sbjct: 525 YRTQNRGGKGVKGMETKDDDFVKQLTTACTHDYIMFFTNFGRMHWLKVYDIPEATRVS 582 >gi|88856908|ref|ZP_01131560.1| DNA gyrase subunit A [marine actinobacterium PHSC20C1] gi|88813876|gb|EAR23746.1| DNA gyrase subunit A [marine actinobacterium PHSC20C1] Length = 819 Score = 375 bits (964), Expect = e-101, Method: Compositional matrix adjust. Identities = 208/529 (39%), Positives = 317/529 (59%), Gaps = 22/529 (4%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 E ++ + + ++ +L YA S I RA+PD RDG KPV RRI++ MSEMGL K Sbjct: 15 ERIEDIDVTTEMQGSFLEYAYSVIYSRALPDARDGLKPVQRRILYQMSEMGLRPEKGHVK 74 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 S+R+VG+V+GKLHPHGD S+YD++VRL Q F+ R PLI G GNFG++D D AA RYTEA Sbjct: 75 SSRVVGDVMGKLHPHGDASIYDAMVRLTQSFILRVPLIDGHGNFGSLD-DGPAAPRYTEA 133 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 R+ A + +DED VDF Y+ ++P V P+ FPNLL NG SGIAVGMAT++ H Sbjct: 134 RLQASAIAMTDDLDEDVVDFIPNYDNSTTQPEVLPAAFPNLLVNGASGIAVGMATNMAPH 193 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 N+ E+ AA L+ +P+ S+E+L++++ GPD PTGG I+ + ++Y GRG F+ RA Sbjct: 194 NLIEVVGAARHLLSHPDASLEELMQFVPGPDLPTGGKII-GLAGVKDAYANGRGAFKTRA 252 Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD--ESAEDVRIV 312 + VE + +VVTE+PY V R+IEKI + + AK+I + D+ D + +R+V Sbjct: 253 KVSVESITARKMGLVVTELPYLVGPERVIEKIKDGVNAKKIVGISDVTDLTDRNHGLRLV 312 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 + K PD ++E ++ L+ +E F +N L GR PQ + L +L+ +L HR +V+ Sbjct: 313 IGIKT-GFSPDAVLEQLYRLTPLEDNFSINAVTLVDGR-PQTLGLKALLEVFLKHRLQVV 370 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVD 429 RRS+FR+ R+ +++GLL+A ++IDE+I +IR + D+ + + F L+E Q + Sbjct: 371 TRRSTFRLTKHRERLHLVEGLLVAIVDIDEVIQVIRQSDDSDQARTRLRDVFDLSELQAE 430 Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489 IL LRLR L K ++++E D L AE ++++LL+ ++ E+ +V + F Sbjct: 431 YILELRLRRLTKFSRIELEAEADKLRAEIARLEALLSDDTLIRALVSDELEQVADKFGTP 490 Query: 490 TDLGRRRTTFCEVSRADKATLQQAM--------IEKEPITVVISNRGWI 530 RRT E + T + A I +P V++S G + Sbjct: 491 -----RRTLLTEAPASIATTSRSAARKNLPVLEIADDPCVVLLSTTGRV 534 >gi|261377477|ref|ZP_05982050.1| DNA gyrase, A subunit [Neisseria cinerea ATCC 14685] gi|269146206|gb|EEZ72624.1| DNA gyrase, A subunit [Neisseria cinerea ATCC 14685] Length = 918 Score = 375 bits (964), Expect = e-101, Method: Compositional matrix adjust. Identities = 228/628 (36%), Positives = 352/628 (56%), Gaps = 65/628 (10%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 VSL + + YL YA+S I RA+PD+RDG KPVHRR+++AM E+ ++ +A+KKSARIV Sbjct: 19 VSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELKNNWNSAYKKSARIV 78 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGD +VYD++VR+AQ F RY L+ GQGNFG+IDG +AAA RYTE RM ++ Sbjct: 79 GDVIGKYHPHGDTAVYDTIVRMAQDFAMRYVLVDGQGNFGSIDGLAAAAMRYTEIRMAKI 138 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 + +L ++E+ V+F Y+ + EP+V P++FP LL NG+SGIAVGMAT+IP HN+ + Sbjct: 139 SHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGSSGIAVGMATNIPPHNLSDT 198 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 A L L+D PE I++L++ I PDFPTG I + E Y+ GRG +RA+ E Sbjct: 199 INACLRLLDAPETEIDELIDIIQAPDFPTGATIY-GLSGVREGYKTGRGRVVIRAKTHTE 257 Query: 260 EVGRGS--WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317 +G+ IV+ EIPYQV K++L+EKI EL+ K + + ++RDES + V+ Sbjct: 258 PIGKNGEREAIVIDEIPYQVNKAKLVEKIGELVREKTLEGISELRDESDKSGMRVVIELK 317 Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377 R+ + ++++ ++ L+ ++ F +NM VL G+ P+++ L IL E+L HRREV+ RR+ Sbjct: 318 RNENAEVVLNQLYKLTPLQDSFGINMVVLVDGQ-PRLLNLKQILSEFLRHRREVVTRRTL 376 Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSR-------------- 420 FR++ I +G +A NIDEII +I+ N + K +++R Sbjct: 377 FRLKKARHEGHIAEGKAVALSNIDEIIKLIKESPNAAEAKEKLLARPWRSSLVEEMLTRS 436 Query: 421 ----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458 + L+E Q DAIL + LR+L L++ +I NL+ + Sbjct: 437 GLDLEMMRPEGLAANIGLKEQGYYLSEIQADAILRMSLRNLTGLDQEEIVESYKNLMGKI 496 Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518 +L+ ++ I E+ E+K T+ G R + D A + +I + Sbjct: 497 IDFVDILSKPERITQIIRDELEEIK------TNYGDERRSEINPFGGDIA--DEDLIPQR 548 Query: 519 PITVVISNRGWIRSLKSHSVDL--------SALHFKEGDSLKIALHAHTTDRILLLSTDG 570 + V +++ G+I++ + A K+ D ++ A+T D ++ + G Sbjct: 549 EMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDYLMCFTNLG 608 Query: 571 KA-----YTLPAGNLLS-GRGHGEAIQL 592 K Y LP G S GR IQL Sbjct: 609 KCHWIKVYKLPEGGRNSRGRPINNVIQL 636 >gi|229829523|ref|ZP_04455592.1| hypothetical protein GCWU000342_01615 [Shuttleworthia satelles DSM 14600] gi|229791954|gb|EEP28068.1| hypothetical protein GCWU000342_01615 [Shuttleworthia satelles DSM 14600] Length = 882 Score = 375 bits (963), Expect = e-101, Method: Compositional matrix adjust. Identities = 190/485 (39%), Positives = 308/485 (63%), Gaps = 10/485 (2%) Query: 10 NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69 T+ + ++ V L+ +E Y+ YA+S I RA+PD+RDG KPV RR++++M E+ Sbjct: 11 QTVRSDTIQEVDLKSTMETSYIDYAMSVIAARALPDVRDGLKPVQRRVLYSMIELNNTPD 70 Query: 70 AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129 +K ARIVG+ +GK HPHGD S+Y +LV +AQP+ R L+ G GNFG+IDGD AAA Sbjct: 71 KPHRKCARIVGDTMGKYHPHGDSSIYGALVNMAQPWSMRNILVDGHGNFGSIDGDGAAAM 130 Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189 RYTEAR+++++ ++ +++D VDF ++E + EPVV P++ PNLL NGT+GIAVGMAT Sbjct: 131 RYTEARLSKISMAMMADINKDTVDFIPNFDETEKEPVVLPARLPNLLVNGTTGIAVGMAT 190 Query: 190 SIPSHNVQEICEAALALIDN-----PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYR 244 +IP HN++E+ A + +IDN I ++L + GPDFPTGGII+ R I E+YR Sbjct: 191 NIPPHNLREVIAACVKIIDNRVEEDRSTDISEILGIVKGPDFPTGGIIL-GRAGIEEAYR 249 Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304 GRG +VRA +E + G I+V+EIPY V K+R+IEKIA+++ KR+ + +RDE Sbjct: 250 TGRGKIKVRAVADIEPMDNGKHRIIVSEIPYGVNKARMIEKIADMVKDKRLDGITALRDE 309 Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364 ++ + V+ + ++P++++ ++ + ++ + + M L +G P++M L +L + Sbjct: 310 TSREGMRVVIELRKDINPNVMLNKLYKQTQLQDSYGVIMLAL-VGNQPRIMSLKEVLDHY 368 Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRF 421 + H+ +V+ RR+ F + R IL+GLL A NIDE+I IIR+ K ++ RF Sbjct: 369 ILHQEDVVTRRTRFDLNKAQERDHILQGLLTALDNIDEVIKIIRSSKSVAIAKEQLMGRF 428 Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481 +L+E Q AI+++RLR+L LE ++++E L+ + +L K+ + E++E Sbjct: 429 ALSEAQAQAIVDMRLRALTGLEREKLEAEHRELMEKIAYFKGILADHKKLLTVVKEEMQE 488 Query: 482 VKEIF 486 + + + Sbjct: 489 IADKY 493 >gi|304382901|ref|ZP_07365383.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Prevotella marshii DSM 16973] gi|304335926|gb|EFM02174.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Prevotella marshii DSM 16973] Length = 863 Score = 375 bits (963), Expect = e-101, Method: Compositional matrix adjust. Identities = 219/616 (35%), Positives = 354/616 (57%), Gaps = 27/616 (4%) Query: 6 ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65 + + T+ ++ + +++ ++ Y+ Y++S I RA+PD+RDGFKPVHRRI++ M +G Sbjct: 1 MDENQTIDQDRILKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMQGLG 60 Query: 66 LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125 +KK AR+VG+V+GK HPHGD SVY +LVRLAQ + RY L+ GQGNFG++DGDS Sbjct: 61 NTSDKPYKKCARVVGDVLGKYHPHGDSSVYGALVRLAQDWNMRYTLVDGQGNFGSVDGDS 120 Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185 AAA RYTE R++++ E I+ +++D VD D ++ EP V P+K PNLL NG +GIAV Sbjct: 121 AAAMRYTECRLSKMGEHIMDDLEKDTVDMDDNFDGTLKEPRVMPTKVPNLLVNGGNGIAV 180 Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245 GMAT+IP+HN+ E+ + A IDNP+I E L+ YI PDFPTG I + + ++Y Sbjct: 181 GMATNIPTHNLGEVIDGCCAYIDNPDIDTEGLMHYIKAPDFPTGAYIY-GIQGVKDAYET 239 Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305 G+G +RA+ +E IVVTEIPY V K++LIE IA+L+ +I + ++ DES Sbjct: 240 GKGRVVIRAKAEIES-HESHDKIVVTEIPYGVNKAQLIEYIADLVKEGKIDGISNVNDES 298 Query: 306 A-EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364 + +RIV+ K R + ++++ +F ++ +++ F +N L GR P+++ L +K + Sbjct: 299 GRQGMRIVVDVK-RDANANVILNKLFKMTALQSSFSVNCIALVNGR-PRLLTLKECVKYF 356 Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRF 421 + HR +V RR+ F ++ R IL+GL+IA NIDE++ +IR P + + RF Sbjct: 357 VEHRHDVTIRRTQFDLKKAQERAHILEGLIIACDNIDEVVHLIRASKAPSDAQRALEKRF 416 Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481 L E Q AI+++RL L L Q+ +E + L + S+L+ + + E++ Sbjct: 417 ELDELQSKAIVDMRLSQLTGLRMEQLHAEYEELEKLIAYLQSILDDPELCKKVMKDELQA 476 Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR-----SLKSH 536 VKE + RRT E+ + + + +P+ + +S+ G+I+ K Sbjct: 477 VKEKYGDE-----RRT---EIKYSSEEFNPEDFYPNDPVVITVSHLGYIKRTALSEFKEQ 528 Query: 537 S---VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQ 591 + V +E D + A + +L + G+ Y L + G G AIQ Sbjct: 529 ARGGVGSRGSRTREEDFTEFIYPATMHNTMLFFTRKGRCYWLKCYEIPEGTKDSKGRAIQ 588 Query: 592 LLIDLNHNQDIVTAFV 607 +++++ + D V AF+ Sbjct: 589 NMLNIDSD-DSVNAFL 603 >gi|254780182|ref|YP_003064595.1| DNA gyrase subunit A [Candidatus Liberibacter asiaticus str. psy62] gi|254039859|gb|ACT56655.1| DNA gyrase subunit A [Candidatus Liberibacter asiaticus str. psy62] Length = 910 Score = 375 bits (963), Expect = e-101, Method: Compositional matrix adjust. Identities = 244/697 (35%), Positives = 374/697 (53%), Gaps = 65/697 (9%) Query: 4 DNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63 ++I +S+ E+ + +VS+ ++ YL YA++ I RAIPDLRDG KPVHRRI+ M + Sbjct: 3 EHIISSDEEEEKGITSVSITDEMQNSYLTYAINVILGRAIPDLRDGLKPVHRRILFGMMQ 62 Query: 64 MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123 MG+++ + K ARI GEV+GK HPHG+ ++YD+L R+AQ + R LI GQGNFG++DG Sbjct: 63 MGVEWNKKYVKCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSVDG 122 Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183 D AA RYTE R+ + A +L + +D VDFR Y+ EPVV +++PN+L NG GI Sbjct: 123 DPPAAERYTECRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCARYPNVLVNGGGGI 182 Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243 AVGMAT+IP+HN+ E+ + +A+IDNP+I ++ L+E I GPDFPTG +I+ R I +Y Sbjct: 183 AVGMATNIPTHNLGEVVDGCVAVIDNPDIDLDALMEIIRGPDFPTGAVIL-GRTGIKNAY 241 Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303 GRG +R +E+ IVVTEIPYQV K+ ++EKIAEL+ KRI + D+RD Sbjct: 242 ATGRGSIVIRGVSHIEKTSGDREQIVVTEIPYQVNKAAMLEKIAELVREKRIVDIADLRD 301 Query: 304 ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363 ES V+ R D+++ ++ + +++ F +NM L+ G P+ L GILK Sbjct: 302 ESDRQGYRVVIELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIGILKA 360 Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSR 420 ++A R EV+ RR+ + + R +L GL IA N+DE++ IIR P+ ++ R Sbjct: 361 FVAFREEVVVRRTKYLLNKARDRAHVLVGLAIAVANLDEVVRIIRFSPNPETARRELMQR 420 Query: 421 --------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNL 454 L+E Q AIL LRL L L I++EL++L Sbjct: 421 SWNASDIKDLIDLIDDSSYTIGSDGTMYLSEVQTRAILELRLARLTGLGRDDIRNELNSL 480 Query: 455 LAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCE--VSRADKATLQQ 512 E ++ +L+S + I E+ VK+ RRT E + D + Sbjct: 481 GIEIKECLDILSSRSRLLGIIKQELLSVKDELDTP-----RRTRIVEGLLDMED-----E 530 Query: 513 AMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRIL 564 I +E + V +S+ G++ R+ + S + ++ D + T +L Sbjct: 531 DCIVREDMVVTVSHLGYVKRVPLSVYRAQRRGGKGRSGVVMRDEDFVTDLFIVSTHTSVL 590 Query: 565 LLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY----DSTCKLL 615 S+ G K + LP G S + G+A+ ++ LN + I T + S L Sbjct: 591 FFSSLGFVYKEKVWRLPIG---SPQARGKALINILSLNQGERITTIMPFPEDESSWNNLY 647 Query: 616 VV--SSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM 650 VV + GN + S+ I R GK +K+ S +++ Sbjct: 648 VVFATKHGNVRRNKLSDFIQINRSGKIAMKLDSRDEI 684 >gi|311114019|ref|YP_003985240.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Gardnerella vaginalis ATCC 14019] gi|310945513|gb|ADP38217.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Gardnerella vaginalis ATCC 14019] Length = 879 Score = 375 bits (963), Expect = e-101, Method: Compositional matrix adjust. Identities = 230/622 (36%), Positives = 352/622 (56%), Gaps = 44/622 (7%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 VK + L+ + E YLAYALS I ERA+PD+RDG KPVHRR+I+AM + G + K + Sbjct: 43 VKHMDLQQEMRESYLAYALSVIVERALPDVRDGLKPVHRRVIYAMYDGGYRPDRGYNKCS 102 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+V+GK HPHGD ++YD+LVR+AQ + RY L+ GQGNFG+ D AAA RYTE RM Sbjct: 103 RVVGDVMGKYHPHGDSAIYDTLVRMAQSWSMRYMLVDGQGNFGSPGDDPAAAMRYTECRM 162 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 +A +++ +D+D VDF Y+ + EP V P++FPNLL NG++GIAVGMAT+IP HN+ Sbjct: 163 APLAMEMVRDIDKDTVDFLPNYDGKTQEPTVLPARFPNLLVNGSAGIAVGMATNIPPHNM 222 Query: 197 QEICEAALALIDNPEISIEKLLEYII----GPDFPTGGIIVESRESIVESYRLGRGGFRV 252 +E+ + +D+P+ S +LLE +I GPDFPTG I+ + I ++YR GRG + Sbjct: 223 REVADGVHWALDHPDASNSELLEALIQRIKGPDFPTGATIL-GHKGIEQAYRTGRGLITM 281 Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV--R 310 RA EE+ +G C+VVTE+PYQV RL I E + +I + D+RDE++ R Sbjct: 282 RAVVNTEEI-KGRMCLVVTELPYQVNPDRLAASIREAVRDGKIQGIADMRDETSGRTGQR 340 Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370 +VL K R P +++ +++ S ++ F NM L G VP+ + LD ++ W++H+ E Sbjct: 341 LVLVLK-RDAVPKVVLNNLYKHSQLQQTFGANMLALVDG-VPRTLSLDAFIRHWVSHQLE 398 Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQ 427 V+ RR+ + + + R IL+G L A IDE++A+IR+ D + +++ + + Q Sbjct: 399 VIDRRTRYLKREAEERDHILQGYLKALDMIDEVVALIRSSKDVDTARTGLMNLLDVDDVQ 458 Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487 DAIL ++LR L LE +I E + L+ + E + +L S ++Q + E+ EI + Sbjct: 459 ADAILAMQLRRLAALERQKILDEHEELMRKIEDYNDILASPERQRKIVGDEL---DEIVA 515 Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------D 539 K D RRT S + +I +E + V ++ G+I+ K+ Sbjct: 516 KYGD--ERRTRILPFSGEMNV---EDLIAEENVVVTVTRAGYIKRTKADEYRAQHRGGKG 570 Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGH-------- 586 + +E D + T + +L + G KAY LP G+ S H Sbjct: 571 IKGAKLREDDVVDHFFLTSTHNWLLFFTNRGRVYRIKAYELPEGSRDSKGQHVANLLQFT 630 Query: 587 -GEAIQLLIDLNHNQDIVTAFV 607 GE IQ ++ + N D+ V Sbjct: 631 PGETIQAVLSI-PNYDVAKYLV 651 >gi|291561639|emb|CBL40438.1| DNA gyrase subunit A [butyrate-producing bacterium SS3/4] Length = 840 Score = 375 bits (963), Expect = e-101, Method: Compositional matrix adjust. Identities = 225/614 (36%), Positives = 362/614 (58%), Gaps = 37/614 (6%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 + + + L+ +E+ Y+ YA+S I RA+PD+RDG KPV RR++++M+E+ +K Sbjct: 7 DKIHEIDLKKTMEKSYIDYAMSVIASRALPDVRDGLKPVQRRVLYSMAELNNGPDKPHRK 66 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 SARIVG+ +GK HPHGD S+Y +LV +AQ + RY L+ G GNFG+IDGD AAA RYTEA Sbjct: 67 SARIVGDTMGKYHPHGDSSIYGALVNMAQRWSMRYMLVDGHGNFGSIDGDGAAAMRYTEA 126 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 R+++++ +L + +D VDF ++E + EP V PS+FPNLL NG +GIAVGMAT+IP H Sbjct: 127 RLSKISVEMLADIYKDTVDFIPNFDETEKEPTVLPSRFPNLLVNGGTGIAVGMATNIPPH 186 Query: 195 NVQEICEAALALIDNP-----EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249 N++E+ A + +IDN + S+E++L+ I GPDFPTG I+ +R I E+YR GRG Sbjct: 187 NLREVIAAVVKIIDNQVEEGRQTSMEEVLQIIKGPDFPTGAEILGTR-GIEEAYRTGRGK 245 Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-ED 308 RVRA +E G I+VTE+PY V K+RLIEKIAEL+ K+I + I DES E Sbjct: 246 IRVRAVTNIETAPNGKSHIIVTELPYLVNKARLIEKIAELVKTKKIDGITGITDESNREG 305 Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368 +RI + + R ++ ++L+ + + ++ F + M L + P+V+ + +L+ +L H+ Sbjct: 306 IRINIELR-RDVNANVLLNQLLKHTQLQDSFGVIMLAL-VNNEPKVLNILQMLEYYLDHQ 363 Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTE 425 ++V+ RR+ + + + R IL+GLL A +IDE+I IIR N + K V++ RF LT+ Sbjct: 364 KDVVTRRTKYDLNKAEERAHILEGLLKALDHIDEVIRIIRGSANVAEAKRVLMERFELTD 423 Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485 Q AI+++RLR+L LE ++++E L A+ ++ ++L + I EI + E Sbjct: 424 PQAQAIVDMRLRALTGLEREKLENEYKELEAKIAELRAILADENKLLGVIKKEILVISEK 483 Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD------ 539 + RRT ++ D +++ +I + + ++N G+I+ + SVD Sbjct: 484 YGDD-----RRT---KIGFEDDMSVED-LISDDDTVIAMTNLGYIKRM---SVDNFKSQN 531 Query: 540 -----LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEAIQL 592 + + + D ++ L I+ + G+ Y + A + +GR G AI Sbjct: 532 RGGKGIKGMQTIDEDFIEDLLMTTNHHYIMFFTNTGRCYRIKAYEIPEAGRTARGTAIVN 591 Query: 593 LIDLNHNQDIVTAF 606 L+ L + + A Sbjct: 592 LLQLQPGEKVTAAI 605 >gi|256823912|ref|YP_003147872.1| DNA gyrase subunit A [Kytococcus sedentarius DSM 20547] gi|256687305|gb|ACV05107.1| DNA gyrase subunit A [Kytococcus sedentarius DSM 20547] Length = 875 Score = 375 bits (963), Expect = e-101, Method: Compositional matrix adjust. Identities = 204/527 (38%), Positives = 322/527 (61%), Gaps = 21/527 (3%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 ++ V L ++ Y+ YA+S I RA+PD+RDG KPVHRRI++AM + G ++ K A Sbjct: 37 IEPVDLSSEMQRSYIEYAMSVIVSRALPDVRDGLKPVHRRIVYAMYDGGYRPDRSYNKCA 96 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+V+ HPHGD ++YD++VRL+QP+ RYPLI GQGNFG+ D AA RYTE RM Sbjct: 97 RVVGDVMANYHPHGDSAIYDAMVRLSQPWSMRYPLIDGQGNFGSAGDDGPAAPRYTECRM 156 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 +A +++ + ED VDF Y+ +P V P++FPNLL NG++GIAVGMAT IP HN+ Sbjct: 157 QPLAMELVRDITEDTVDFEPNYDGRTMQPTVLPARFPNLLVNGSAGIAVGMATQIPPHNL 216 Query: 197 QEICEAALALIDNPEIS----IEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252 +E+ E L+DNPE + EKLL+ I GPDFPTG +I+ R I ++YR GRG + Sbjct: 217 REVAEGCQWLLDNPEATKEELQEKLLQVIKGPDFPTGALIM-GRSGIEDAYRTGRGSITM 275 Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV--R 310 RA VEE+ +G C+VVTE+PYQV L KIAEL+ ++ + D+RDE++ R Sbjct: 276 RAVVEVEEI-QGRTCLVVTELPYQVNPDALARKIAELVKTGKLQGIADLRDETSGRTGQR 334 Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370 +V+ K ++ +++ +++ + ++ F NM L G VP+ +P++ ++ W+ H+ E Sbjct: 335 LVIVLKRDAV-AKVVLNNLYKHTQLQQNFGANMLALVDG-VPRTLPINAFVRHWVDHQVE 392 Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQ 427 V+ RR+ +R++ + ++ IL+GLL A +DE+IA+IR ++ + ++ + E Q Sbjct: 393 VIVRRTRYRLKRAEEQIHILRGLLKALDALDEVIALIRRSPTVEQARDGLMDLLDIDEVQ 452 Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487 AIL+++LR L LE +I E D L A E ++ +L + +Q I+ E+ + E + Sbjct: 453 ARAILDMQLRRLAALERQKIIDEHDRLQALIEDLEDILATPARQRTIISEELAAIVEQYG 512 Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK 534 RRT E+ +D + +I E + V I+ G+ + ++ Sbjct: 513 DE-----RRT---EIVPSDAEVNMEDLIPDENVVVTITRGGYAKRIR 551 >gi|311742170|ref|ZP_07715980.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Aeromicrobium marinum DSM 15272] gi|311314663|gb|EFQ84570.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Aeromicrobium marinum DSM 15272] Length = 855 Score = 375 bits (963), Expect = e-101, Method: Compositional matrix adjust. Identities = 225/638 (35%), Positives = 358/638 (56%), Gaps = 38/638 (5%) Query: 9 SNTLVEEN-VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67 ++T +E + ++ V L+ ++ Y+ YA+S I RA+PD+RDG KPVHRR+++AM + G Sbjct: 2 TDTPIERDRIEPVELQDEMQRSYIDYAMSVIVARALPDVRDGLKPVHRRVLYAMYDGGYR 61 Query: 68 FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAA 127 F K +RI+G+V+G+ HPHGD ++YD+LVRLAQP+V R P+ISGQGNFG+ D AA Sbjct: 62 PDRGFSKCSRIIGDVMGQYHPHGDTAIYDTLVRLAQPWVMRAPMISGQGNFGSPGDDPAA 121 Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187 A RYTE ++ VA +++ +DE+ VDF+ Y+ SEP V PS+ PNLL NG++GIAVGM Sbjct: 122 AMRYTECKLAPVAMEMVRDIDEETVDFKPNYDGRSSEPTVLPSRIPNLLVNGSAGIAVGM 181 Query: 188 ATSIPSHNVQEICEAALALIDNPEIS----IEKLLEYIIGPDFPTGGIIVESRESIVESY 243 AT+IP HN++E+ E A + +PE + ++ LLE I GPDFPT G+IV + I + Y Sbjct: 182 ATNIPPHNLREVAEGAQWALAHPEATRTELLDALLERIKGPDFPTHGLIVGT-SGIEDMY 240 Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303 R GRG +RA +EE +G +VVTE+PYQV L+ KIA+L+ R+ + D+RD Sbjct: 241 RTGRGSVTMRAIVGIEEDTKGRIQLVVTELPYQVNPDSLMRKIADLVNTGRLQGVSDLRD 300 Query: 304 ESAEDV-RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362 ES+ V R ++ R +++ +++ +D+++ F NM L + VP+ + LDG + Sbjct: 301 ESSSRVGRRIVIEIRRDAVARVVLNNLYKHTDLQSNFSANMLAL-VDDVPRTLTLDGFIT 359 Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVS 419 W+ H+ +V+ RR+ +R++ + R I +GL A +D++IA+IR D+ + ++ Sbjct: 360 NWIHHQIDVIRRRTEYRLRKAEERAHIFRGLGKALDRLDDVIALIRRSPTVDEARTGLIE 419 Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479 + E Q +AIL ++LR L LE +I EL L +L ++Q ++ E+ Sbjct: 420 LLEIDEIQANAILEMQLRRLAALERQKILDELAELERMIADFTDILERPERQREIVSTEL 479 Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSH--- 536 EI K D R R + AD + +I E + V I++ G+ + K+ Sbjct: 480 ---AEIVDKYGDDRRSR-----IIPADGDLSDEDLIPDEEVVVTITSGGYAKRTKTDLYR 531 Query: 537 -----SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGH 586 + ++GD ++ IL +T G KAY LP + GH Sbjct: 532 VQHRGGKGVRGAQLRDGDFVEHLFPTTAHHWILFFTTAGRVYRAKAYHLPEAGRDAKGGH 591 Query: 587 GEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKG 621 + L+ ++ I Y+ L++ + KG Sbjct: 592 ---VAGLLSFQPDEQIAQVLAVRDYEQAPYLVLATRKG 626 >gi|297156695|gb|ADI06407.1| DNA topoisomerase IV subunit A [Streptomyces bingchenggensis BCW-1] Length = 817 Score = 375 bits (963), Expect = e-101, Method: Compositional matrix adjust. Identities = 207/523 (39%), Positives = 319/523 (60%), Gaps = 15/523 (2%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 EE + + + ++ +L YA S I RA+PD RDG KPVHRRI++ M+EMGL F Sbjct: 15 EERILDIDVVDEMQGSFLEYAYSVIYSRALPDARDGLKPVHRRILYQMNEMGLRPERGFV 74 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYT 132 K AR+VGEV+GKLHPHGD S+YD+LVR+AQPF R PL+ G GNFG++ + D AA RYT Sbjct: 75 KCARVVGEVMGKLHPHGDASIYDALVRMAQPFSMRVPLVDGHGNFGSLGNDDPPAAMRYT 134 Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192 E RM L+ + +DED VDF Y+ + EP+ P+ +PNLL NG SGIAVGMAT++ Sbjct: 135 ECRMASATSLMTESIDEDTVDFAPNYDGSEQEPLALPAAYPNLLVNGASGIAVGMATNMA 194 Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252 HN+ E+ AA LI +P ++ L+ ++ GPD PTGG IV + ++Y GRG F++ Sbjct: 195 PHNLGEVIAAARHLIRHPGADLDALMRFVPGPDLPTGGRIV-GLGGVRDAYEKGRGTFKI 253 Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD--ESAEDVR 310 RA VE+V + +VVTE+P+ V ++I KI +L+ +K++ + D++D + +R Sbjct: 254 RATVSVEDVTQRRKGLVVTELPFTVGPEKVISKIKDLVGSKKLQGISDVKDLTDRQHGLR 313 Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370 +V+ KN +P+ ++E ++ L+ ME F +N L G+ P + L +L+ +L HR + Sbjct: 314 LVIEIKN-GFNPEAVLEQLYKLTPMEESFGINNVALVDGQ-PLTLGLKELLEVYLDHRFD 371 Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQ 427 V+ RRS FR R+ +++GLL+A L+IDE+I +IR N + K +++RF L++ Q Sbjct: 372 VVRRRSEFRRTKRRDRLHLVEGLLVALLDIDEVIRVIRSSENAAEAKQSLIARFELSDVQ 431 Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487 IL+ LR L K + +++SE D L AE E++ +L+S + ++ E+ +V + F Sbjct: 432 TQYILDTPLRRLTKFDRIELESERDRLKAEIEELTRILDSDAELRKLVSAELAQVAKKFG 491 Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI 530 RRT E + A T + +P V++S+ G + Sbjct: 492 TE-----RRTVLLESADA-PVTAVPLEVADDPCRVLLSSTGLL 528 >gi|313112496|ref|ZP_07798167.1| DNA gyrase, A subunit [Faecalibacterium cf. prausnitzii KLE1255] gi|310625184|gb|EFQ08468.1| DNA gyrase, A subunit [Faecalibacterium cf. prausnitzii KLE1255] Length = 864 Score = 375 bits (963), Expect = e-101, Method: Compositional matrix adjust. Identities = 248/737 (33%), Positives = 386/737 (52%), Gaps = 40/737 (5%) Query: 26 LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85 +E +L Y++S I RA+PD+RDG KPVHRRI++ M E G D ++KSA VG V+G Sbjct: 28 IETAFLDYSMSVIVSRALPDVRDGLKPVHRRILYTMHERGNDPSHPYRKSADTVGAVLGS 87 Query: 86 LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145 HPHGD SVYD++VRLAQ F RYPL+ GQGNFG++DGD AAYRYTEARM+++A +L Sbjct: 88 YHPHGDASVYDAMVRLAQDFSLRYPLVDGQGNFGSVDGDPPAAYRYTEARMSRMAVEMLT 147 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 +++D +D+ ++E EP V P +FPNLL NG+ GIAVGMAT+IP HN+ E+ + +A Sbjct: 148 DIEKDTIDWDPNFDETKKEPSVLPCRFPNLLVNGSQGIAVGMATNIPPHNLSEVIDGCIA 207 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265 ID+P+I + L+EYI GPDFPT GII+ R I +Y GRG +R R +EE G Sbjct: 208 YIDDPDIDLPGLMEYIKGPDFPTAGIIM-GRSGIRAAYATGRGKITLRGRATIEETKNGR 266 Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325 I++TEIPY V K+RLIE +A+L+ KRI + + DE+ ++ + + ++ Sbjct: 267 TQIIITEIPYMVNKARLIENMADLVKEKRIEGITGLNDETNRKGMRIVVDIRKDANAQVI 326 Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385 + ++ + ++ + M + +VP+V+ L +L++++ + EV+ RR+ + ++ Sbjct: 327 LNQLYQYTQLQDTVGVIMLAIDH-KVPKVLTLKQMLQKYVEFQDEVVRRRTQYDLKKAKE 385 Query: 386 RVEILKGLLIAYLNIDEIIAIIR----NEDKPKPVMVSRFSLTENQVDAILNLRLRSLRK 441 R IL+GL A +DE+IA IR + K ++ +F + Q DAI+ L+L L Sbjct: 386 RAHILEGLKKATDIVDELIATIRACKGGMAEAKAAIMEQFGFDDPQADAIVKLQLGRLAG 445 Query: 442 LEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCE 501 LE +I+ EL +L A+ E +++L + + E+ E+K+ F RRT E Sbjct: 446 LEILKIEEELASLQAKIENWEAILADDARVLAIVKEELLEMKKRFGDE-----RRT---E 497 Query: 502 VSRADKATLQQAMIEKEPITVVISNRGWI-RSLKSH-------SVDLSALHFKEGDSLKI 553 + + +I +E ++ G+I R LK+ +S + KE D ++ Sbjct: 498 IQSVTGEVDIEDLIAEEQCVYTLTEAGYIKRQLKATYQAQRRGGRGISGMTRKEEDIVQE 557 Query: 554 ALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608 T D +L ++ G K YT+ G+ S G I L+ L + + Sbjct: 558 MFVGSTHDYVLFVTDRGRLFRIKGYTIAEGSRTS---KGSNIVNLLQLAEGEKVTNMICQ 614 Query: 609 ----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDH--VA 662 D+ + + +K E AN RK +E ++T H + Sbjct: 615 SKEADTEGGFVTMVTKQGLIKRTPLEQYANIRKSGLIGIALNEGDALAWTRLTSGHDMLI 674 Query: 663 VVGENRKLLIFS-IDQIPEMSRGKGVRLQSYKDGGISDVICFKIC-EGLTWIDSAGRSYN 720 V N + + F+ D P G GVR +G +V+ IC EG T + Sbjct: 675 VATRNGQAIRFNEADARPMGRSGHGVRAIRLAEG--DEVVGVCICREGGTVLTVTENGKG 732 Query: 721 RSENDLLGWLGKRGGVG 737 R + + RGG G Sbjct: 733 RRSDIDTYRITARGGKG 749 >gi|261338541|ref|ZP_05966425.1| DNA gyrase, A subunit [Bifidobacterium gallicum DSM 20093] gi|270276562|gb|EFA22416.1| DNA gyrase, A subunit [Bifidobacterium gallicum DSM 20093] Length = 917 Score = 375 bits (963), Expect = e-101, Method: Compositional matrix adjust. Identities = 243/716 (33%), Positives = 390/716 (54%), Gaps = 44/716 (6%) Query: 12 LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71 L E ++ V L+ + E YL+YALS I ERA+PD+RDG KPVHRR+++AM + G Sbjct: 37 LTGERIQPVDLQVEMRESYLSYALSVIVERALPDVRDGMKPVHRRVVYAMYDGGYRPDRG 96 Query: 72 FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131 + K +R+VG+V+GK HPHGD ++YD+LVR+AQ + RY L+ GQGNFG+ D AAA RY Sbjct: 97 YNKCSRVVGDVMGKYHPHGDSAIYDTLVRMAQSWSMRYMLVDGQGNFGSPGDDPAAAMRY 156 Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191 TE RM ++ +++ +D+D VDF Y+ + EP V P++FPNLL NG+SGIAVGMAT+I Sbjct: 157 TECRMAPLSMEMVRDIDKDTVDFVPNYDGKTQEPTVLPARFPNLLVNGSSGIAVGMATNI 216 Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYII----GPDFPTGGIIVESRESIVESYRLGR 247 P HN++E+ + +D+P+ + E+LLE +I GPDFPTG I+ + I ++YR GR Sbjct: 217 PPHNLREVADGVHWALDHPDATREELLEALIARIKGPDFPTGATIL-GHKGIEQAYRTGR 275 Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307 G +RA EE+ G C+VVTE+PYQV RL+ I E + +I + D+RDE++ Sbjct: 276 GLITMRAVVNTEEIN-GRMCLVVTELPYQVNPDRLVVSIREGVRDGKIQGIADMRDETSG 334 Query: 308 DV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365 R+VL K R P +++ +++ S ++ F NM L G VP+ + LD ++ W+ Sbjct: 335 RTGQRLVLVLK-RDAVPKVVLNNLYKHSQLQQTFGANMLALVDG-VPRTLSLDAFIRHWV 392 Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAII---RNEDKPKPVMVSRFS 422 AH+ +V+ RR+++ + + R IL+G L A IDE++A+I R+ + + ++ Sbjct: 393 AHQIDVVARRTAYLKREAEERDHILQGYLKALDMIDEVVALIRSSRDAETARTGLMDLLD 452 Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482 + E Q DAIL ++LR L LE +I E + L+ + +L ++Q QI + E+ Sbjct: 453 VDEVQADAILAMQLRRLAALERQKIMDEHNELMRRIADYEDILAKPERQ-RQIVGD--EL 509 Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---- 538 EI S+ D RRT S + +I +E + V +++ G+I+ K+ Sbjct: 510 DEIVSRYGD--ERRTRILPYSGEMNV---EDLIAEENVVVTVTHAGFIKRTKADEYRAQH 564 Query: 539 ----DLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEA 589 + +E D + T + +L + G KAY LP G+ S H Sbjct: 565 RGGKGIKGTKLREDDVVDHFFLTSTHNWLLFFTDKGRVYRLKAYELPEGSRDSKGQHVAN 624 Query: 590 IQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649 + H Q +++ Y+ L++ + G SE + + G +++ ++E Sbjct: 625 LLQFAPDEHIQTVLSIPNYEVAEYLVLATKSGKVKKTRLSEYDSPRQGGLIAVRLMTDEN 684 Query: 650 MKLVVKVTG-------DHVAVVGENRKLLIFSI--DQIPEMSR-GKGVRLQSYKDG 695 + ++ G D + +V L F DQ+ M R GV+ +++G Sbjct: 685 GEHADELIGANLCNDTDDIVLVSRKGMSLKFKADNDQLRPMGRQTAGVQGMKFREG 740 >gi|325570904|ref|ZP_08146553.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Enterococcus casseliflavus ATCC 12755] gi|325156308|gb|EGC68491.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Enterococcus casseliflavus ATCC 12755] Length = 820 Score = 375 bits (963), Expect = e-101, Method: Compositional matrix adjust. Identities = 210/618 (33%), Positives = 366/618 (59%), Gaps = 20/618 (3%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 N++ ++L + +R+ Y+ I+ERA+PD+RDG KPV RRI+ AM++ G + F+KS Sbjct: 6 NIQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFAMNQDGNTYDKGFRKS 65 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 A+ VG ++G HPHGD S+Y+++VR++Q + R LI GN G++DGD AA RYTEAR Sbjct: 66 AKSVGNIMGNFHPHGDSSIYEAMVRMSQDWKLRQILIEMHGNNGSMDGDPPAAMRYTEAR 125 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 +++++ +L+ ++++ V+ +++ + EP V P+K+PNLL NG++GI+ G AT IP+HN Sbjct: 126 LSELSGELLKDIEKNTVELVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATEIPTHN 185 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 + EI + + LID+P+ S+++L++YI GPDFPTGGI+ + +E I ++Y G+G +R++ Sbjct: 186 LGEIIDGTVYLIDHPQASLDQLMKYIPGPDFPTGGIL-QGKEEIKKAYETGKGKVILRSK 244 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315 +E++ G IV+ EIPY+V K+ L++K+ E+ + KRI + ++RDE+ ++ Sbjct: 245 TKIEDIKGGKQQIVINEIPYEVNKANLVKKMDEIRLNKRIDGIAEVRDETDRTGLQIVVE 304 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 + + ++ +F ++++ + NM + R PQ + L IL+ ++ HRREV+ +R Sbjct: 305 LKKEANAQGILNYLFKNTELQINYNFNMVAIDNMR-PQQVGLKRILESYIKHRREVIEKR 363 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDK--PKPVMVSRFSLTENQVDAIL 432 S F +Q +R I+ GL+ A +DE+IA IR ++DK K +V + TE Q +AI+ Sbjct: 364 SRFELQKAQKRQHIVDGLIKALSILDEVIATIRGSKDKKDAKNNLVVQHGFTEEQAEAIV 423 Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492 NL+L L + Q+++E L ++ ++LN + I E+RE+K+ +S Sbjct: 424 NLQLYRLTNTDITQLQAEAKELAETIAELTTILNEESELLKVIKKELREIKKKYSTP--- 480 Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSVDL-SALHFKEGD 549 R T E + Q ++ +E + V ++ G+++ SL+S+ + KEGD Sbjct: 481 ---RLTEIEAEIQEIKIETQVLVAQEEVVVTVTRDGYVKRSSLRSYGASKPEEIGMKEGD 537 Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAI-QLLIDLNHNQDIVTAF 606 SL + +T D +LL++ G P L L + GE I Q ++ L ++ I+ F Sbjct: 538 SLLYSNQMNTLDHLLLVTNKGNTIYRPVHELPDLKWKDLGEHISQTVMTLAQDEMIIGVF 597 Query: 607 VY---DSTCKLLVVSSKG 621 Y D +++S G Sbjct: 598 AYKEIDPLKNFVLISKNG 615 >gi|300780142|ref|ZP_07089998.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Corynebacterium genitalium ATCC 33030] gi|300534252|gb|EFK55311.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Corynebacterium genitalium ATCC 33030] Length = 879 Score = 375 bits (963), Expect = e-101, Method: Compositional matrix adjust. Identities = 261/764 (34%), Positives = 410/764 (53%), Gaps = 59/764 (7%) Query: 26 LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85 ++ Y+ YA+S I RA+PD+RDG KPVHRRII+AM + G ++ KSAR V + +G+ Sbjct: 23 MQTSYIDYAMSVIVGRALPDVRDGMKPVHRRIIYAMYDSGYRPERSYVKSARPVSDTMGQ 82 Query: 86 LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145 HPHGD ++YD+LVRLAQP+V RYPL+ GQGNFG+ D AA RYTE +MT +A +++ Sbjct: 83 FHPHGDSAIYDTLVRLAQPWVMRYPLVDGQGNFGSRGNDGPAAMRYTECKMTPLAMEMVR 142 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 + E+AVDF Y+ + EP V PS+ PNLL NG+SGIAVGMAT+IP HN+ E+ EA Sbjct: 143 DIRENAVDFSPNYDGKAQEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHNLGELAEAIYW 202 Query: 206 LIDNPE----ISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEV 261 ++DN + +++ +E + GPDFPT G+IV I ++Y GRG R+R +EEV Sbjct: 203 ILDNHDADEKTTLDACMERVKGPDFPTAGMIV-GDSGIKDAYTTGRGSIRMRGVTEIEEV 261 Query: 262 GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV--RIVLFPKNRS 319 G IV+TE+PY V I IAE + A ++ + I DES++ V RIV+ K + Sbjct: 262 GT-RQVIVITELPYNVNPDNFISGIAEQVAAGKMTGISKIEDESSDRVGMRIVVTLKRDA 320 Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379 + P +++ +++ S +ET F NM L G VP+ + LD +L+ ++AH+ EV+ RR+ FR Sbjct: 321 V-PRVVLNNLYKHSPLETNFSANMLSLVDG-VPRTLRLDQMLRYYVAHQIEVIVRRTQFR 378 Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQVDAILNLRL 436 + ++R IL+GL+ A +DE+IA+IR D+ + ++S + E Q DAIL ++L Sbjct: 379 LDEAEKRAHILRGLVKALDMLDEVIALIRRSPTVDEAREGLMSLLDVDEVQADAILAMQL 438 Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496 R L LE +I +L + AE +L ++Q +A E+REV K D RR Sbjct: 439 RRLAALERQKIVDDLAAIEAEIADYKDILAKPERQRAIVADELREV---VDKHGD--ERR 493 Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEG 548 T A ++ +I +E + V I+ G+ +S K + K+ Sbjct: 494 TKLVA---ATGDVTEEDLIARENVVVTITATGYAKRTKVDAYKSQKRGGKGVRGAELKQD 550 Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GHGEAIQLLIDLNHNQDIVTAF 606 D +K T D IL + G+ Y L A L +GR G+ + L++ + I Sbjct: 551 DVVKNFFVCSTHDWILFFTNFGRVYRLKAYELPEAGRAARGQHVANLLEFQPEEKIAQVI 610 Query: 607 ---VYDSTCKLLVVSSKGNAFIVEESEII-ANTRKGKTFLKVSSEEKMKLV-VKVTG--D 659 Y L++ + G V++S + + + + ++ E L+ + G D Sbjct: 611 QIQTYQDAPYLVLATRDGR---VKKSRLTDYESARSAGLIAINLNEGDTLIGASLVGDDD 667 Query: 660 HVAVVGENRKLLIFSID--QIPEMSRG----KGVRLQSYKDGGISDVICFKICEGLTWID 713 + +V E + + F+ D Q+ M R KG+R + G + + +G + Sbjct: 668 DILLVSEQGQSIRFTADDEQLRPMGRATAGVKGMRFR----GDDQLLAMTTVSDGQYLLV 723 Query: 714 SAGRSYNR----SENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753 + Y + +E + G RGG+G + K P+ GK + + Sbjct: 724 ATSGGYGKRTPIAEYNPQG----RGGMGVMTFKYTPKRGKLIGA 763 >gi|227893833|ref|ZP_04011638.1| DNA topoisomerase [Lactobacillus ultunensis DSM 16047] gi|227864322|gb|EEJ71743.1| DNA topoisomerase [Lactobacillus ultunensis DSM 16047] Length = 826 Score = 375 bits (963), Expect = e-101, Method: Compositional matrix adjust. Identities = 218/621 (35%), Positives = 354/621 (57%), Gaps = 38/621 (6%) Query: 8 NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67 + N + ++ V L + +L YA+S I RA+PD+RDG KPV RRI++ MSE+G+ Sbjct: 2 DENQTQDHRIRNVDLTSMMRSSFLDYAMSVIVARALPDVRDGLKPVQRRILYGMSELGVT 61 Query: 68 FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAA 127 +KKSARIVGEV+GK HPHGD S+Y ++ +AQ F RY L+ G GNFG++DGD A Sbjct: 62 PDKPYKKSARIVGEVMGKFHPHGDSSIYLAMAHMAQDFSYRYMLVDGHGNFGSVDGDEPA 121 Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187 A RYTEARM+++A +L+ ++++ +D++ Y++ ++EPVV P++ PNLL NG +GIAVGM Sbjct: 122 AMRYTEARMSKIAVEMLRDINKNTIDWQRNYDDTENEPVVLPARIPNLLVNGANGIAVGM 181 Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247 T+IP HN+ E+ L+ NP+ + + L++ I GPDFPT G I+ R I +Y G+ Sbjct: 182 TTNIPPHNLSEVISGLHMLMKNPDATTKDLMKVIPGPDFPT-GGIIMGRGGIYRAYESGK 240 Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307 G VRA+ +E G I+V EIP+ V K+ L++KIA+L K I + +RDES + Sbjct: 241 GNIVVRAKTNIETEKSGRERIIVNEIPFMVNKAELVKKIADLAREKIIDGITGVRDESDQ 300 Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367 + R +++ ++F + M+ F +NM + G P + L +L+ +L H Sbjct: 301 TGMRITIDIRRDASASVVLNNLFKQTQMQANFGMNMVAIVDG-APHYLTLKQMLQYYLDH 359 Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLT 424 + +V+ RR+ F + + R IL+GL IA NIDEI+ IIR + D K ++SRF L Sbjct: 360 QEDVVTRRTKFELAKAEARAHILEGLRIALDNIDEIVHIIRSSHSSDIAKATLISRFGLD 419 Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484 + Q AILN+RL L LE ++++E L A+ +L ++ I E+ ++++ Sbjct: 420 DKQSQAILNMRLVRLTGLERDKVEAEYKELQAKIADYKDILAKPERIDQIIYDELLDIQK 479 Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSLKSHSVD---- 539 F +RRT E+ ++ +++ + +IEK+ I + +++ G+I+ + Sbjct: 480 RFGD-----KRRT---EIGASEVVSIEDEDLIEKQNILLTVTHNGYIKRMPIQEFKTQNR 531 Query: 540 ----LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNL 580 + + +EGD ++ +++ T D +L + GK Y+ LP NL Sbjct: 532 GGKGIKGMGVQEGDFIEHLIYSSTHDTLLFFTNAGKVYSKKAYEIPEYGRMAKGLPVVNL 591 Query: 581 LSGRGHGEAIQLLIDLNHNQD 601 L GE +Q +I++ D Sbjct: 592 LQLE-KGEKVQTVINIPEGAD 611 >gi|111219513|ref|YP_710307.1| DNA gyrase subunit A [Frankia alni ACN14a] gi|111147045|emb|CAJ58692.1| DNA gyrase, subunit A, type II topoisomerase [Frankia alni ACN14a] Length = 834 Score = 375 bits (963), Expect = e-101, Method: Compositional matrix adjust. Identities = 249/761 (32%), Positives = 409/761 (53%), Gaps = 51/761 (6%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 + ++ + + ++ YL YA+S I RA+P++RDG KPVHRR+++AM + G + K Sbjct: 11 DRIEPIGIEVEMQRSYLDYAMSVIVGRALPEVRDGLKPVHRRVLYAMYDGGYRPDRGYFK 70 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 +R+VG+V+G HPHGD ++YD+LVRLAQP+ RYPL+ G GNFG+ D AA RYTEA Sbjct: 71 CSRVVGDVMGNYHPHGDSAIYDTLVRLAQPWSLRYPLVDGNGNFGSPGNDPPAAMRYTEA 130 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 RM +A +L+ +D++ VDF Y+ EP+V PS+FPNLL NG GIAVGMAT+IP H Sbjct: 131 RMAALAMEMLRDIDQETVDFAPNYDGRSQEPLVLPSRFPNLLVNGAGGIAVGMATNIPPH 190 Query: 195 NVQEICEAALALIDNPEISIEKLLEYII----GPDFPTGGIIVESRESIVESYRLGRGGF 250 N++E+ +D+ E + E+LLE +I GPDFPT G+IV R I ++YR GRG Sbjct: 191 NLREVATGVQWALDHAEATDEELLEALIGIIKGPDFPTSGLIV-GRSGIEDAYRTGRGSI 249 Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV- 309 R+RA VEE +G +VVTE+PYQV L EKIAEL+ ++ + D+RDE++ + Sbjct: 250 RMRAVVNVEE-NKGRTQLVVTELPYQVNPDNLAEKIAELVRDNKVTGISDVRDETSARIG 308 Query: 310 -RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368 R+V+ K R +++ +++ + ++ F +NM + G VP+ + LD +++ ++ H+ Sbjct: 309 QRLVIDLK-RDAVAKVVLNNLYKHTQLQDTFGVNMLAIVDG-VPRTLRLDQMIRYYVEHQ 366 Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLTE 425 +V+ RR+ ++++ R+ +L GLLIA ++DE+I++IRN D + ++ RF+L+E Sbjct: 367 VDVIVRRTRYQLRKARERLHVLDGLLIALDHLDEVISLIRNAESADAARGQLMERFTLSE 426 Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485 Q AIL+++LR L LE +I E L A +++++L S +Q I E+ EV E Sbjct: 427 IQATAILDMQLRRLAALERQRIIDEAAELRARISELEAILASPVRQRQIIGEELAEVVEK 486 Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHS 537 F RRT D + + +I +E + V ++ G+ RS + Sbjct: 487 FGDE-----RRTRLVPFE-GDMSI--EDLIAQEDVVVTVTRGGYAKRTKTDLYRSQRRGG 538 Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLID 595 + +E D ++ T +L + G+ Y A L + G+ + ++ Sbjct: 539 KGVQGAALREDDIVEHFFVTTTHHWLLFFTNKGRVYRAKAHELPEQARSAKGQHVANILA 598 Query: 596 LNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM-- 650 + ++ I Y+ L++ + +G S+ +N G + + ++++ Sbjct: 599 FSQDERIAEVIALKDYEVAPYLVLATKRGLCKKTALSDFDSNRAGGLVAINLRDDDELIA 658 Query: 651 -KLVVKVTGDHVAVVGENRKLLIFSID--QIPEMSRGK----GVRLQSYKDGGISDVICF 703 +LV GD + +V N + + F D Q+ M R G+R + + DV+ Sbjct: 659 ARLVAP--GDDLLLVSRNAQSIRFHADDEQLRPMGRATSGVIGMRFDAEDELLSMDVVVP 716 Query: 704 KICEGLTWIDSAGRSYNR--SENDLLGWLGKRGGVGSLVPK 742 L S G + +E + G RGG G L K Sbjct: 717 GTTADLLVATSGGYAKRTPLAEYPVQG----RGGKGVLTAK 753 >gi|302875223|ref|YP_003843856.1| DNA topoisomerase (ATP-hydrolyzing) [Clostridium cellulovorans 743B] gi|307688904|ref|ZP_07631350.1| DNA topoisomerase IV subunit A [Clostridium cellulovorans 743B] gi|302578080|gb|ADL52092.1| DNA topoisomerase (ATP-hydrolyzing) [Clostridium cellulovorans 743B] Length = 956 Score = 375 bits (962), Expect = e-101, Method: Compositional matrix adjust. Identities = 217/613 (35%), Positives = 361/613 (58%), Gaps = 27/613 (4%) Query: 13 VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72 + N+ V L A+ E YL YA+ ++RA+PD+RDG KPVHRRI++ + + Sbjct: 9 TDSNIIQVPLEEAMPENYLPYAVEVARDRALPDVRDGLKPVHRRILYGAHLLKAYPDRPY 68 Query: 73 KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132 KSARIVG+++GK HPHGD SVYD++V LAQ F R PLI G GN+G+IDGDSAAA RYT Sbjct: 69 YKSARIVGDILGKFHPHGDSSVYDAMVILAQDFTTRKPLIDGHGNWGSIDGDSAAAMRYT 128 Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192 EAR+T +A +L+ +D+D V+ + Y++ + EP V P+K+PNLL NG GIAVG+AT+IP Sbjct: 129 EARLTPLALEMLKDIDKDVVNMVNNYSDSELEPEVLPAKYPNLLVNGVFGIAVGLATNIP 188 Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252 HN+ E+ + LA IDN +I+ ++L+ +I GPD PTGGI++ ++SI+ +Y G G + Sbjct: 189 PHNLGEVIDGTLAFIDNKDITTKELMNHIKGPDLPTGGILI-GKDSILSAYESGNGRVTL 247 Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR----IPLLEDIRDESAED 308 RA+ +E++ G +V+TE P++ K+RL++ I+E+ K+ + + DIRDES Sbjct: 248 RAKTKIEKLENGRLGVVITEFPFRKNKARLLQSISEMTADKKHSKALEGIADIRDESDRT 307 Query: 309 -VRIVL-FPKN-RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365 +R V+ F K+ + D +++ + ++++ P NM ++ G+ P+ M L +L ++ Sbjct: 308 GIRAVIEFKKSVDEMQGDKILKYLLKKTELQVNLPFNMVAIASGK-PETMGLRTMLWHYI 366 Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFS 422 H++EV+ RR+ ++ +RR I++G + A +D+II IR+ ++++F Sbjct: 367 EHQKEVVTRRTRKELEIAERRFHIVEGFIKAINIMDQIIETIRSSKSKSDASQNLIAKFD 426 Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482 TE Q AIL L L L LE + E L K+ ++L+S ++ N I E+ E+ Sbjct: 427 FTELQATAILELMLYRLTGLEITAFEKEYKELSKLIRKLKNILDSERELLNVIKQELLEI 486 Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---- 538 K+ ++ + RRT + K + + +I E I + +SN G+I+ + + Sbjct: 487 KDKYADA-----RRTQIIDDENEAKIDMDE-LIVVEDIVITLSNEGYIKRVPQKTYVRSN 540 Query: 539 -DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLID 595 + + ++EGD + + ++T + IL+ + +G Y + L + GE + +I Sbjct: 541 SNPQDIEYREGDYNRFIISSNTLETILVFTDNGNMYQFKGNAIPELRWKEKGERLDTIIK 600 Query: 596 -LNHNQD-IVTAF 606 +N + + IVTA Sbjct: 601 GMNLDSERIVTAL 613 >gi|309379673|emb|CBX21662.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 912 Score = 375 bits (962), Expect = e-101, Method: Compositional matrix adjust. Identities = 228/628 (36%), Positives = 351/628 (55%), Gaps = 65/628 (10%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 VSL + + YL YA+S I RA+PD+RDG KPVHRR+++AM E+ ++ AA+KKSARIV Sbjct: 19 VSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIV 78 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGD +VYD++VR+AQ F RY LI GQGNFG++DG +AAA RYTE RM ++ Sbjct: 79 GDVIGKYHPHGDTAVYDTIVRMAQNFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMAKI 138 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 + +L ++E+ V+F Y+ + EP+V P++FP LL NG+SGIAVGMAT+IP HN+ + Sbjct: 139 SHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPALLVNGSSGIAVGMATNIPPHNLSDT 198 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 A L L+D PE I++L++ I PDFPTG I + E Y+ GRG +RA+ E Sbjct: 199 INACLRLLDAPETEIDELIDIIQAPDFPTGATIY-GLSGVREGYKTGRGRVVIRAKTHTE 257 Query: 260 EVGRGS--WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317 +G+ IV+ EIPYQV K++L+EKI EL+ K + + ++RDES + V+ Sbjct: 258 PIGKNGEREAIVIDEIPYQVNKAKLVEKIGELVREKTLEGISELRDESDKSGMRVVIELK 317 Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377 R+ + ++++ ++ L+ ++ F +NM VL G+ P+++ L IL E+L HRREV+ RR+ Sbjct: 318 RNENAEVVLNQLYKLTQLQDSFGINMVVLVDGQ-PRLLNLKQILSEFLRHRREVVTRRTL 376 Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSR-------------- 420 FR++ I +G +A NIDEII +I+ N + K +++R Sbjct: 377 FRLKKARHEGHIAEGKAVALSNIDEIIRLIKESPNAAEAKEKLLARPWRSSLVEEMLTRS 436 Query: 421 ----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458 + L+E Q DAIL + LR+L L+ +I NL+ + Sbjct: 437 GLDLEMMRPEGLAANIGLKEQGYYLSEIQADAILRMSLRNLTGLDREEIVESYKNLMGKI 496 Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518 +L+ ++ I E+ E+K T+ G R E++ + +I + Sbjct: 497 IDFVDILSKPERITRIIRDELEEIK------TNYGDER--LSEINPFGGDIADEDLIPQR 548 Query: 519 PITVVISNRGWIRSLKSHSVDL--------SALHFKEGDSLKIALHAHTTDRILLLSTDG 570 + V +++ G+I++ + A K+ D ++ A+T D ++ + G Sbjct: 549 EMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDYLMCFTNLG 608 Query: 571 KA-----YTLPAGNLLS-GRGHGEAIQL 592 K Y LP G S GR IQL Sbjct: 609 KCHWIKVYKLPEGGRNSRGRPINNVIQL 636 >gi|326560266|gb|EGE10654.1| DNA gyrase subunit A [Moraxella catarrhalis 7169] gi|326566416|gb|EGE16566.1| DNA gyrase subunit A [Moraxella catarrhalis BC1] Length = 888 Score = 375 bits (962), Expect = e-101, Method: Compositional matrix adjust. Identities = 250/746 (33%), Positives = 403/746 (54%), Gaps = 85/746 (11%) Query: 13 VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72 + ++V + + L+ YL YA+S I RA+PD+RDG KPVHRRI++AM E+G D+ + Sbjct: 1 MSDSVSPIGIVEELKRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYAMHELGNDYNKKY 60 Query: 73 KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132 KSAR+VG+VIGK HPHGD +VYD++VR+AQ F RY L++GQGNFG++DGD AA RYT Sbjct: 61 LKSARVVGDVIGKYHPHGDTAVYDAIVRMAQDFSLRYMLVNGQGNFGSMDGDPPAAMRYT 120 Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192 E +M ++ +L +D++ VD+ D Y+ P V P++ PNLL NG +GIAVGMAT++ Sbjct: 121 EMKMQKLTHKMLADLDKETVDWEDNYDGSMKMPSVLPARIPNLLVNGATGIAVGMATNMA 180 Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252 HN+ E+ A LA ++P IS ++L+ +I GPDFPTGGII R I+++YR G+G + Sbjct: 181 PHNLTEVLNACLAYAEDPNISTDELISHISGPDFPTGGII-HGRSGIIDAYRTGKGRLHI 239 Query: 253 RARWCVEEVG-----RGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-A 306 R R+ +E +G + I+ T+IPYQV K+ LI+ IA+L+ AK+I + +IRDES Sbjct: 240 RGRYHIEPMGDSGANKDRERIIFTQIPYQVNKANLIKHIADLVNAKKIEGITEIRDESDK 299 Query: 307 EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366 E VR+ + + R + ++++ ++F + +ET F +NM L G+ P++M L ++ ++ Sbjct: 300 EGVRVAIDLR-RGENCEVMVNNLFNQTPLETSFSINMVALDNGQ-PKLMTLRDLVAAFIR 357 Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN----------------- 409 HR+EV+ RR+ F + R +L+GL IA NID+I+ I+ Sbjct: 358 HRQEVVTRRTIFELNKALARGHLLEGLAIALANIDDILQTIKQSANRSQARENLLVRTWQ 417 Query: 410 -----------------------EDKPKPVMV----SRFSLTENQVDAILNLRLRSLRKL 442 ED P + +R+ L+ +QV+AIL+++L L L Sbjct: 418 SAGVVAMLDAAGAKSIRPEMIDGEDLKAPYGLIENKTRYRLSPDQVNAILDMQLHRLTGL 477 Query: 443 EEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS--KSTDLGRRRTTFC 500 E+ ++ E +L E ++ +L+ + E+ ++++ F + TD+ R F Sbjct: 478 EQDKLTGEYQEILGEIARLTLILDDFDVLMGVVRAELIDIRDEFGDERKTDIVDARHDF- 536 Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLK 552 +R D +I ++ + + +S G+ ++ K SA KE D ++ Sbjct: 537 --NRED-------LIPEQTVVLTVSRTGYAKTQPISDYQAQKRGGKGRSATAMKEDDVIE 587 Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNL-LSGRG-HGEAIQLLIDLNHNQDIVTAF---- 606 L T IL + G+ + L + ++ RG G + LI+L ++ +VTA Sbjct: 588 HLLVTSTHAHILCFTNTGRVFRLRGFEIPIASRGSKGRPLVNLINLESDE-LVTAILPVN 646 Query: 607 -VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT-GDHVAVV 664 + D + ++ G V S+ AN R G +E + V +T G+ ++ Sbjct: 647 DLKDENSFVFFATASGTVKRVALSQ-FANLRAGGLRAIDLAEGDTLIGVAITDGEQEIML 705 Query: 665 GENR-KLLIFSIDQIPEMSR-GKGVR 688 N K + F I MSR KGVR Sbjct: 706 FSNEGKAIRFKEQSIRAMSRVAKGVR 731 >gi|288916705|ref|ZP_06411080.1| DNA gyrase, A subunit [Frankia sp. EUN1f] gi|288351960|gb|EFC86162.1| DNA gyrase, A subunit [Frankia sp. EUN1f] Length = 816 Score = 375 bits (962), Expect = e-101, Method: Compositional matrix adjust. Identities = 237/685 (34%), Positives = 383/685 (55%), Gaps = 41/685 (5%) Query: 26 LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85 ++ YL YA+S I RA+P++RDG KPVHRR+++AM + G + K +R+VG+V+G Sbjct: 1 MQRSYLDYAMSVIVGRALPEVRDGLKPVHRRVLYAMYDGGYRPDRGYFKCSRVVGDVMGN 60 Query: 86 LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145 HPHGD ++YD+LVRLAQ + RYPL+ G GNFG+ D AA RYTEARM +A +L+ Sbjct: 61 YHPHGDSAIYDTLVRLAQSWSLRYPLVDGNGNFGSPGNDPPAAMRYTEARMAPLAMEMLR 120 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 +D++ VDF Y+ SEP+V PS+FPNLL NG GIAVGMAT+IP HN+ E+ + Sbjct: 121 DIDQETVDFAPNYDGRSSEPLVLPSRFPNLLVNGAGGIAVGMATNIPPHNLVEVAKGVQW 180 Query: 206 LIDNPEISIEKLLEYII----GPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEV 261 +D+P+ + +LLE +I GPDFPT G+IV R I ++YR GRG R+RA VEE Sbjct: 181 ALDHPDATDAELLEALIGIVKGPDFPTYGLIV-GRNGIEDAYRTGRGSIRMRAVVNVEE- 238 Query: 262 GRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV--RIVLFPKNRS 319 +G +VVTE+PYQV L EKIAEL+ +I + D+RDE++ + R+V+ K R Sbjct: 239 NKGRTQLVVTELPYQVNPDNLAEKIAELVRDNKITGISDVRDETSARIGQRLVIDLK-RD 297 Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379 +++ +++ + ++ F +NM + G VP+ + LD I+ ++ H+ EV+ RR+ ++ Sbjct: 298 AVAKVVLNNLYKHTQLQDTFGVNMLAIVDG-VPRTLRLDQIISYYVEHQIEVIVRRTRYQ 356 Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLTENQVDAILNLRL 436 ++ R+ +L GLLIA ++DE+IA+IRN D + ++ RFSL+E Q AIL+++L Sbjct: 357 LRKARERLHVLDGLLIALDHLDEVIALIRNAESADVARGQLMERFSLSEIQATAILDMQL 416 Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496 R L LE +I E L A+ +++++L S +Q I E+ EV E + RR Sbjct: 417 RRLAALERQRIIDEAAELRAKVSELEAILASPARQREIIGQELAEVVEKYGDE-----RR 471 Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHSVDLSALHFKEG 548 T D + + +I +E + V ++ G+ RS K + +E Sbjct: 472 TRLVPFE-GDMSV--EDLIAREDVVVTVTRGGYAKRTKTDLYRSQKRGGKGVQGAALRED 528 Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAF 606 D ++ T +L + G+ Y A L + G+ + ++ + ++ I Sbjct: 529 DIVEHFFVTTTHHWLLFFTNKGRVYRAKAHELPEQARSAKGQHVANILAFSQDERIAEVM 588 Query: 607 V---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM---KLVVKVTGDH 660 Y++ L++ + +G ++ +N G + + ++++ +LV GD Sbjct: 589 AIQDYEAAPYLVLATKRGLCKKTALTDFDSNRAGGLVAINLRDDDELISARLVAP--GDD 646 Query: 661 VAVVGENRKLLIFSID--QIPEMSR 683 + +V N + + F D Q+ M R Sbjct: 647 LLLVSRNAQSIRFHADDEQLRPMGR 671 >gi|134095749|ref|YP_001100824.1| DNA gyrase subunit A [Herminiimonas arsenicoxydans] gi|133739652|emb|CAL62703.1| DNA gyrase subunit A [Herminiimonas arsenicoxydans] Length = 871 Score = 375 bits (962), Expect = e-101, Method: Compositional matrix adjust. Identities = 225/610 (36%), Positives = 346/610 (56%), Gaps = 61/610 (10%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 +SL + + YL YA+S I RA+PD+RDG KPVHRR++ AM EM + F K AR+V Sbjct: 11 ISLEEEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEMNNVWNRPFVKCARVV 70 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 GE +GK HPHGD S+YD+LVR+AQPF RY L+ GQGNFG+IDGD+AAA RYTE R+ ++ Sbjct: 71 GETMGKYHPHGDASIYDTLVRMAQPFSLRYMLVDGQGNFGSIDGDNAAAMRYTECRLDKI 130 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A +L +D++ VDF Y+ ++ EP V P++ PNLL NG+SGIAVGMAT+IP HN+ E+ Sbjct: 131 AGELLADLDKETVDFVPNYDGKEREPSVLPTRIPNLLINGSSGIAVGMATNIPPHNITEV 190 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 + AL ++ N E +I++L+E I PDFPTGGII + + YR GRG +RA+ E Sbjct: 191 IDGALHVLRNAEATIDELIEIIPAPDFPTGGIIY-GVSGVRDGYRTGRGRVVMRAKTHFE 249 Query: 260 EVGR-GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318 E G+ I+V E+PYQV K L+E+IAEL+ K++ + DIRDES + V+ R Sbjct: 250 EYGKENRSAIIVDELPYQVNKKSLLERIAELVRDKKLEGISDIRDESDKSGMRVVIELKR 309 Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378 + P++++ +++ + ++ F +NM L G+ P+++ L +L+ +L+HRREV+ RR+ F Sbjct: 310 NEVPEVVLNNLYKQTQLQDTFGMNMVALVDGQ-PKLLNLKQMLECFLSHRREVVTRRTIF 368 Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV-----------------MVSR- 420 ++ R +L+GL +A NID+ IAII+ P PV M++R Sbjct: 369 ELRKARERGHVLEGLAVALANIDDFIAIIKAAPTP-PVAKVDLMSRAWDSSVVREMLART 427 Query: 421 ---------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453 + L+++Q IL +RL+ L LE+ +I +E Sbjct: 428 GEEGVGGVNAFRPENLPKHYGIQPDGLYKLSDDQAQEILQMRLQRLTGLEQDKIVNEYKE 487 Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513 ++++ + +L ++ I E+ K + RR + E++ D T + Sbjct: 488 VMSQIADLLDILAKPERVTVIITDELTVAKNEYGIGNKDERRSS--IELNATDLGT--ED 543 Query: 514 MIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565 +I + + V +S+ G++ R+ K A+ KE D + A+T D IL Sbjct: 544 LITPQDMVVTLSHTGYMKSQPITEYRAQKRGGRGKQAMATKEDDWIDQLFIANTHDYILC 603 Query: 566 LSTDGKAYTL 575 S G+ Y L Sbjct: 604 FSNRGRMYWL 613 >gi|313668529|ref|YP_004048813.1| DNA gyrase subunit A [Neisseria lactamica ST-640] gi|192382558|gb|ACF04300.1| GyrA [Neisseria lactamica] gi|313005991|emb|CBN87450.1| DNA gyrase subunit A [Neisseria lactamica 020-06] Length = 912 Score = 375 bits (962), Expect = e-101, Method: Compositional matrix adjust. Identities = 228/628 (36%), Positives = 351/628 (55%), Gaps = 65/628 (10%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 VSL + + YL YA+S I RA+PD+RDG KPVHRR+++AM E+ ++ AA+KKSARIV Sbjct: 19 VSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIV 78 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGD +VYD++VR+AQ F RY LI GQGNFG++DG +AAA RYTE RM ++ Sbjct: 79 GDVIGKYHPHGDTAVYDTIVRMAQNFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMAKI 138 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 + +L ++E+ V+F Y+ + EP+V P++FP LL NG+SGIAVGMAT+IP HN+ + Sbjct: 139 SHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPALLVNGSSGIAVGMATNIPPHNLSDT 198 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 A L L+D PE I++L++ I PDFPTG I + E Y+ GRG +RA+ E Sbjct: 199 INACLRLLDAPETEIDELIDIIQAPDFPTGATIY-GLSGVREGYKTGRGRVVIRAKTHTE 257 Query: 260 EVGRGS--WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317 +G+ IV+ EIPYQV K++L+EKI EL+ K + + ++RDES + V+ Sbjct: 258 PIGKNGEREAIVIDEIPYQVNKAKLVEKIGELVREKTLEGISELRDESDKSGMRVVIELK 317 Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377 R+ + ++++ ++ L+ ++ F +NM VL G+ P+++ L IL E+L HRREV+ RR+ Sbjct: 318 RNENAEVVLNQLYKLTQLQDSFGINMVVLVDGQ-PRLLNLKQILSEFLRHRREVVTRRTL 376 Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSR-------------- 420 FR++ I +G +A NIDEII +I+ N + K +++R Sbjct: 377 FRLKKARHEGHIAEGKAVALSNIDEIIRLIKESPNAAEAKEKLLARPWRSSLVEEMLTRS 436 Query: 421 ----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458 + L+E Q DAIL + LR+L L+ +I NL+ + Sbjct: 437 GLDLEMMRPEGLAANIGLKEQGYYLSEIQADAILRMSLRNLTGLDREEIVESYKNLMGKI 496 Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518 +L+ ++ I E+ E+K T+ G R E++ + +I + Sbjct: 497 IDFVDILSKPERITRIIRDELEEIK------TNYGDER--LSEINPFGGDIADEDLIPQR 548 Query: 519 PITVVISNRGWIRSLKSHSVDL--------SALHFKEGDSLKIALHAHTTDRILLLSTDG 570 + V +++ G+I++ + A K+ D ++ A+T D ++ + G Sbjct: 549 EMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDYLMCFTNLG 608 Query: 571 KA-----YTLPAGNLLS-GRGHGEAIQL 592 K Y LP G S GR IQL Sbjct: 609 KCHWIKVYKLPEGGRNSRGRPINNVIQL 636 >gi|296876575|ref|ZP_06900625.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus parasanguinis ATCC 15912] gi|296432394|gb|EFH18191.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Streptococcus parasanguinis ATCC 15912] Length = 817 Score = 375 bits (962), Expect = e-101, Method: Compositional matrix adjust. Identities = 219/696 (31%), Positives = 393/696 (56%), Gaps = 24/696 (3%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 N++ +SL + ER+ Y+ I+ERA+PD+RDG KPV RRI+++M++ G ++KS Sbjct: 3 NIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTHDKGYRKS 62 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 A+ VG ++G HPHGD S+YD++VR++Q + R L+ GN G++DGD AA RYTEAR Sbjct: 63 AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 ++++A +LQ ++++ V F +++ + EP V P+ FPNLL NG +GI+ G AT IP HN Sbjct: 123 LSEIAGYLLQDIEKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPHN 182 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 + E+ +A + +ID+P ++KL+E++ GPDFPTG II + R+ I ++Y G+G VR++ Sbjct: 183 LAEVIDAVVYMIDHPSAKVDKLMEFLPGPDFPTGAII-QGRDEIKKAYETGKGRVVVRSK 241 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315 +E++ G IVVTEIPY++ K+ L++KI ++ ++ ++ + ++RDES D + Sbjct: 242 TDIEQLKGGKQQIVVTEIPYEINKAVLVKKIDDVRVSNKVAGIAEVRDESDRDGLRIAIE 301 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 + + DL++ +F +D++ + NM + P+ + + IL ++AHRR+++ R Sbjct: 302 LKKDANADLILNYLFKYTDLQVNYNFNMVAID-NYTPRQVGIVPILSSYIAHRRDIIVAR 360 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432 S F + +RR+ I++GL+ +DE+IA+IR N+ K + + TE Q +AI+ Sbjct: 361 SRFDKEKAERRLHIVEGLIRVISILDEVIALIRASENKSDAKENLKVSYDFTEEQAEAIV 420 Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492 L+L L + ++ E NL + + +++ + +N + E+REVK++F Sbjct: 421 TLQLYRLTNTDIVTLEEEHANLKEQIATLAAIIGDERTMFNLMKKELREVKKLFGNP--- 477 Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FKEGD 549 RR+ + ++ + ++E+E V ++ G+I+ S + S L ++ D Sbjct: 478 --RRSELQDTAKTIEIDTASLIVEEETF-VSVTRAGYIKRTSPRSFNASTLEEVGKRDDD 534 Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIVTAF 606 L A TT +LL + G A P L + GE + Q L + ++I+ A Sbjct: 535 ELIFVEPAKTTQHLLLFTNLGNAIYRPIHELTDTKWKDIGEHLSQTLTNFEQEEEILFAE 594 Query: 607 VYDS--TCKLLVVSSKGNAFIVEESEIIA-NTRKGKT--FLKVSSEE-KMKLVVKVTGDH 660 V D + +G E E+ T + K+ + K+ +E ++ V V + Sbjct: 595 VVDQFEGVTYFAATQQGQIKRFERKELSPWRTYRSKSTKYAKIKDQEDRIVAVAPVVFED 654 Query: 661 VAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDG 695 + ++ +N L F+I+++P + ++ GV+ + KDG Sbjct: 655 IMIITKNGYGLRFNIEEVPVVGAKAAGVKAINLKDG 690 >gi|302531362|ref|ZP_07283704.1| DNA gyrase, A subunit [Streptomyces sp. AA4] gi|302440257|gb|EFL12073.1| DNA gyrase, A subunit [Streptomyces sp. AA4] Length = 875 Score = 375 bits (962), Expect = e-101, Method: Compositional matrix adjust. Identities = 220/587 (37%), Positives = 340/587 (57%), Gaps = 33/587 (5%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 + ++ V ++ ++ Y+ YA+S I RA+PD+RDG KPV RRI+++M + G + K Sbjct: 10 DRIEPVDIQQEMQRSYIDYAMSVIVSRALPDVRDGLKPVARRILYSMFDSGFRPDRGYNK 69 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 +R+VG+V+G HPHGD ++YD+LVRLAQP+ RYPLI GQGNFG+ D AAA RYTE+ Sbjct: 70 CSRVVGDVMGNYHPHGDSAIYDALVRLAQPWSLRYPLIDGQGNFGSSGNDPAAAMRYTES 129 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 R+ +A +L ++ED VDFRD Y+ EP V PS+FPNLL NG SGIAVGMAT+IP H Sbjct: 130 RLAPLAMQMLADIEEDTVDFRDNYDGRTQEPDVLPSRFPNLLVNGGSGIAVGMATNIPPH 189 Query: 195 NVQEICEAALALIDNPEISIEKLLEYII----GPDFPTGGIIVESRESIVESYRLGRGGF 250 N++E+ E + ++NPE + ++LL ++ GPDFPT +I+ + I ++YR GRG Sbjct: 190 NLREVSEGVVWALENPEATDDELLAALLVRIKGPDFPTKAMILGT-SGIEDAYRTGRGSI 248 Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA--ED 308 R+RA VEE +G +VV+E+PYQV L+E IA L+ +I + DI DES Sbjct: 249 RMRAVVEVEEDAKGRTILVVSELPYQVNPDNLVENIAHLVRDGKITGIADIADESNSRSG 308 Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368 +RIV+ K R +++ ++F + ++ F +NM L + VP+ + LD I++ ++ H+ Sbjct: 309 MRIVITIK-RDAVAKVVLNNLFKHTQLQQNFGVNMLAL-VDDVPRTLRLDQIIRHYVKHQ 366 Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTE 425 +V+ RR+ FR++ + R IL+GL+ A +DE+IA+IR + D+ +P ++S + E Sbjct: 367 VDVIVRRTRFRLRKAEERAHILRGLVKALDMLDEVIALIRRSPSADEARPGLMSLLEIDE 426 Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485 Q AIL+++LR L LE +I L + E + +L ++Q + I E+ E+ + Sbjct: 427 IQATAILDMQLRRLAALERQRIIDTLAEIELEIADLKDILEKPERQRSIIRDELMEIVDK 486 Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHS 537 + RRT D + +I +E + V I+ G+ RS K Sbjct: 487 YGDD-----RRTQIIPF---DGDVSVEDLIAQEDVVVTITRTGYAKRTKTDLYRSQKRGG 538 Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGN 579 + K+ D ++ T D IL + G KAY LP N Sbjct: 539 KGVQGATLKQDDIVQHFFVCSTHDWILFFTNKGRVYRAKAYDLPEAN 585 >gi|28492973|ref|NP_787134.1| DNA gyrase subunit A [Tropheryma whipplei str. Twist] gi|28572181|ref|NP_788961.1| DNA gyrase subunit A [Tropheryma whipplei TW08/27] gi|28410312|emb|CAD66698.1| DNA gyrase subunit A [Tropheryma whipplei TW08/27] gi|28476013|gb|AAO44103.1| DNA gyrase subunit A [Tropheryma whipplei str. Twist] Length = 819 Score = 375 bits (962), Expect = e-101, Method: Compositional matrix adjust. Identities = 250/719 (34%), Positives = 394/719 (54%), Gaps = 57/719 (7%) Query: 12 LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71 + E+N+ V LR ++ YL YA+S I RA+PD+RDG KPVHRR+++AM + G A Sbjct: 1 MSEQNINQVDLREEMQRSYLDYAMSVIIGRALPDVRDGLKPVHRRVLYAMYKGGYRPEKA 60 Query: 72 FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131 F K AR+VG+V+G+ HPHGD ++YD+LVRL QP+ RYPL GQGNFG+ D AAA RY Sbjct: 61 FSKCARVVGDVMGQFHPHGDAAIYDALVRLVQPWAMRYPLAQGQGNFGSPGNDGAAAPRY 120 Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191 TE +M +A +++ +DED VDF Y+ E EP V P +FPNLL NG+ GIAVGMAT+I Sbjct: 121 TETKMATLAIEMVRDIDEDTVDFSPNYDGESVEPTVMPCRFPNLLVNGSVGIAVGMATNI 180 Query: 192 PSHNVQEICEAALALIDNPEIS----IEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247 P HN+ E+ AL ++NP+ + E LLE I GPDFPTG ++++ I ++Y GR Sbjct: 181 PPHNLAEVSAGALWCLENPDATDEELTEALLERIKGPDFPTGATVLDT-GGIKDAYLTGR 239 Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307 G +R +EE+ G C+VV E+PYQV L KIA L+ ++ + DIRDE++ Sbjct: 240 GSVVMRGVVDIEEID-GRTCLVVRELPYQVNPDNLALKIASLVKENKLSGIADIRDETSG 298 Query: 308 DV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365 R+++ K R +++ S++ + ++ F +NM + G P+ + L ++ W+ Sbjct: 299 RTGQRLIIVLK-RDAVARVVLNSLYKHTQLQENFGVNMLAIVDG-APRTLSLCSFIRLWV 356 Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFS 422 H+ EV+ RR++FR+ ++R IL+ L A IDE+I +IR+ ++ + +++ Sbjct: 357 EHQIEVIVRRTTFRLARAEQRAHILRAYLRALDQIDEVIQLIRSSKSAEEAQSNLMALLK 416 Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKS---ELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479 + E Q AIL+L+LR L LE +I S E++ L++ KI L+ Q IA E+ Sbjct: 417 IDETQARAILDLQLRRLAALERQRIISEAREIEELISSFRKI---LSDKTAQCQVIAEEL 473 Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRA-DKATLQQAMIEKEPITVVISNRGWI-------- 530 RE+ + S + RRT E+ R D + + +I EP+ VV++ G+I Sbjct: 474 REIGQKHSDA-----RRT---EIIRGFDGSVSIEDLIPVEPVVVVMTRCGYIKRTRIDQY 525 Query: 531 RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRG 585 RS + K D + + T + ++ + G KAY +P S Sbjct: 526 RSQHRGGRGVKGAQVKADDVVLQFISTTTHNWLMFFTNTGRVYRAKAYEVPEA---SREA 582 Query: 586 HGEAIQLLIDLNHNQD---IVTAFVYDSTCKLLVVSSKGNAFIVEES--EIIANTRKGKT 640 G+ + L+ L N+ I++ +DS LV+++K + ++ + + E + G Sbjct: 583 RGQHVANLLPLKPNEAVTRILSVSNFDSEDTSLVLATK-DGYVKKTTLKEYDTSLSTGVI 641 Query: 641 FLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGIS 698 +K+ +K+ V D + +V +N + L F + +SRG SY GIS Sbjct: 642 AIKLRPGDKLVSAVLARSDQDIILVTKNARSLRFKSGTLRPLSRG------SYGVKGIS 694 >gi|300728031|ref|ZP_07061406.1| DNA gyrase, A subunit [Prevotella bryantii B14] gi|299774719|gb|EFI71336.1| DNA gyrase, A subunit [Prevotella bryantii B14] Length = 876 Score = 375 bits (962), Expect = e-101, Method: Compositional matrix adjust. Identities = 218/616 (35%), Positives = 352/616 (57%), Gaps = 27/616 (4%) Query: 6 ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65 + + T+ + + +++ +++ Y+ Y++S I RA+PD+RDGFKPVHRRI++ M +G Sbjct: 1 MDENQTIDNDRILRINIEEEMKKSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMLGIG 60 Query: 66 LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125 A+KK AR+VGEV+GK HPHGD SVY +LVR+ Q + RY L+ GQGNFG++DGDS Sbjct: 61 NTSNNAYKKCARVVGEVLGKYHPHGDSSVYGALVRMGQDWNMRYLLVDGQGNFGSVDGDS 120 Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185 AA RYTE R++++ E I+ +D+D VD + +++ EP V P+K PNLL NG +GIAV Sbjct: 121 PAAMRYTECRLSKMGEHIMDDLDKDTVDMTNNFDDTLKEPSVMPTKIPNLLVNGANGIAV 180 Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245 GMAT+IP+HN+ E+ + A IDNP+I ++ L++YI PDFPTG I + + ++Y Sbjct: 181 GMATNIPTHNLGEVIDGCCAYIDNPDIDLDGLMQYIKAPDFPTGAYIY-GIQGVRQAYET 239 Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305 GRG +RA+ +E IVVTEIPY V K++LIE IAEL+ +I + ++ DES Sbjct: 240 GRGRVVMRAKAEIESDDNHDK-IVVTEIPYGVNKAQLIEYIAELVKEGKIDGISNVNDES 298 Query: 306 A-EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364 + +RIV+ K R + ++++ +F ++ +++ F +N L GR P+++ L +K + Sbjct: 299 GRQGMRIVVDLK-RDSNANVILNKLFKMTALQSSFSVNCIALVKGR-PRLLGLKDCVKYF 356 Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRF 421 + HR +V RR+ + ++ R IL+GL+IA NIDE++ IIR P + RF Sbjct: 357 VEHRHDVTIRRTQYELKKAQERAHILEGLIIACDNIDEVVHIIRASKTPADAQRNLEQRF 416 Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481 L E Q AI+++RL L L Q+ +E + L + + +L+ + + E+ E Sbjct: 417 ELDELQSKAIVDMRLSQLTGLRMDQLHAEYEELERMIDYYNQILSDPELCKKVMKDELLE 476 Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSL 533 VKE + + RRT E+ + + + +P+ + +S+ G+I R Sbjct: 477 VKEKYGDA-----RRT---EIKYSSEEFNPEDFYPNDPVVITVSHLGYIKRTPLSDFREQ 528 Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQ 591 V +E D + A +L+ + G+ Y L + G G AIQ Sbjct: 529 ARGGVGSKGARTREQDFTENIYPATMHQTMLIFTKKGRCYWLKCYEIPEGDRNSKGRAIQ 588 Query: 592 LLIDLNHNQDIVTAFV 607 ++++ + D V F+ Sbjct: 589 NMLNIEKD-DAVNGFL 603 >gi|283782557|ref|YP_003373311.1| DNA gyrase, A subunit [Gardnerella vaginalis 409-05] gi|283441808|gb|ADB14274.1| DNA gyrase, A subunit [Gardnerella vaginalis 409-05] Length = 876 Score = 375 bits (962), Expect = e-101, Method: Compositional matrix adjust. Identities = 230/622 (36%), Positives = 352/622 (56%), Gaps = 44/622 (7%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 VK + L+ + E YLAYALS I ERA+PD+RDG KPVHRR+I+AM + G + K + Sbjct: 43 VKNMDLQQEMRESYLAYALSVIVERALPDVRDGLKPVHRRVIYAMYDGGYRPDRGYNKCS 102 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+V+GK HPHGD ++YD+LVR+AQ + RY L+ GQGNFG+ D AAA RYTE RM Sbjct: 103 RVVGDVMGKYHPHGDSAIYDTLVRMAQSWSMRYMLVDGQGNFGSPGDDPAAAMRYTECRM 162 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 +A +++ +D+D VDF Y+ + EP V P++FPNLL NG++GIAVGMAT+IP HN+ Sbjct: 163 APLAMEMVRDIDKDTVDFLPNYDGKTQEPTVLPARFPNLLVNGSAGIAVGMATNIPPHNM 222 Query: 197 QEICEAALALIDNPEISIEKLLEYII----GPDFPTGGIIVESRESIVESYRLGRGGFRV 252 +E+ + +D+P+ S E+LLE +I GPDFPTG I+ + I ++YR GRG + Sbjct: 223 REVADGVHWALDHPDASKEELLEALIQRIKGPDFPTGATIL-GHKGIEQAYRTGRGLITM 281 Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV--R 310 RA EE+ +G C+VVTE+PYQV RL I E + +I + D+RDE++ R Sbjct: 282 RAVVNTEEI-KGRMCLVVTELPYQVNPDRLAASIREAVRDGKIQGIADMRDETSGRTGQR 340 Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370 +VL K R P +++ +++ S ++ F NM L G VP+ + LD ++ W+ H+ E Sbjct: 341 LVLVLK-RDAVPKVVLNNLYKHSQLQQTFGANMLALVDG-VPRTLSLDAFIRHWVTHQLE 398 Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQ 427 V+ RR+ + + + R IL+G L A IDE++A+IR+ + + +++ + E Q Sbjct: 399 VIDRRTRYLKREAEERDHILQGYLKALDMIDEVVALIRSSKDVETARTGLMNLLDVDEVQ 458 Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487 DAIL ++LR L LE +I E ++L+ + + +L S ++Q + E+ EI + Sbjct: 459 ADAILAMQLRRLAALERQKILDEHEDLMIKIADYNDILASPERQRKIVGDEL---DEIVA 515 Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------D 539 K D RRT S + +I +E + V ++ G+I+ K+ Sbjct: 516 KYGD--DRRTKILPFSGEMNV---EDLIAEENVVVTVTRAGYIKRTKADEYRAQHRGGKG 570 Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGH-------- 586 + +E D + T + +L + G KAY LP G+ S H Sbjct: 571 IKGAKLREDDVVDHFFLTSTHNWLLFFTNRGRVYRLKAYELPEGSRDSKGQHVANLLQFT 630 Query: 587 -GEAIQLLIDLNHNQDIVTAFV 607 GE IQ ++ + N D+ V Sbjct: 631 PGETIQAVLSIP-NYDVAKYLV 651 >gi|257876711|ref|ZP_05656364.1| topoisomerase IV A subunit [Enterococcus casseliflavus EC20] gi|257810877|gb|EEV39697.1| topoisomerase IV A subunit [Enterococcus casseliflavus EC20] Length = 820 Score = 375 bits (962), Expect = e-101, Method: Compositional matrix adjust. Identities = 209/618 (33%), Positives = 366/618 (59%), Gaps = 20/618 (3%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 N++ ++L + +R+ Y+ I+ERA+PD+RDG KPV RRI+ AM++ G + F+KS Sbjct: 6 NIQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFAMNQDGNTYDKGFRKS 65 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 A+ VG ++G HPHGD S+Y+++VR++Q + R LI GN G++DGD AA RYTEAR Sbjct: 66 AKSVGNIMGNFHPHGDSSIYEAMVRMSQDWKLRQILIEMHGNNGSMDGDPPAAMRYTEAR 125 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 +++++ +L+ ++++ V+ +++ + EP V P+K+PNLL NG++GI+ G AT IP+HN Sbjct: 126 LSELSGELLKDIEKNTVELVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATEIPTHN 185 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 + EI + + LID+P+ S+++L++YI GPDFPTGGI+ + +E I ++Y G+G +R++ Sbjct: 186 LGEIIDGTIYLIDHPQASLDQLMKYIPGPDFPTGGIL-QGKEEIKKAYETGKGKVILRSK 244 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315 +E++ G IV+ EIPY+V K+ L++K+ E+ + KRI + ++RDE+ ++ Sbjct: 245 TKIEDIKGGKQQIVINEIPYEVNKANLVKKMDEIRLNKRIDGIAEVRDETDRTGLQIVVE 304 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 + + ++ +F ++++ + NM + R PQ + L IL+ ++ HRREV+ +R Sbjct: 305 LKKEANAQGILNYLFKNTELQINYNFNMVAIDNMR-PQQVGLKRILESYIKHRREVIEKR 363 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDK--PKPVMVSRFSLTENQVDAIL 432 S F +Q +R I+ GL+ A +DE+IA IR ++DK K +V + TE Q +AI+ Sbjct: 364 SRFELQKAQKRQHIVDGLIKALSILDEVIATIRGSKDKKDAKNNLVVQHGFTEEQAEAIV 423 Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492 NL+L L + Q+++E L ++ ++LN + I E+RE+K+ ++ Sbjct: 424 NLQLYRLTNTDITQLQAEAKELAETIAELTTILNEENELLKVIKKELREIKKKYTTP--- 480 Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSVDL-SALHFKEGD 549 R T E + Q ++ +E + V ++ G+++ SL+S+ + KEGD Sbjct: 481 ---RLTEIEAEIQEIKIETQVLVAQEEVVVTVTRDGYVKRSSLRSYGASKPEEIGMKEGD 537 Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAI-QLLIDLNHNQDIVTAF 606 SL + +T D +LL++ G P L L + GE I Q ++ L ++ I+ F Sbjct: 538 SLLYSNQMNTLDHLLLVTNKGNTIYRPVHELPDLKWKDLGEHISQTVMTLAQDEMIIGVF 597 Query: 607 VY---DSTCKLLVVSSKG 621 Y D +++S G Sbjct: 598 AYKEIDPLKNFVLISKNG 615 >gi|192382538|gb|ACF04290.1| GyrA [Neisseria meningitidis] gi|192382540|gb|ACF04291.1| GyrA [Neisseria meningitidis] gi|192382552|gb|ACF04297.1| GyrA [Neisseria meningitidis] gi|192382556|gb|ACF04299.1| GyrA [Neisseria meningitidis] Length = 916 Score = 375 bits (962), Expect = e-101, Method: Compositional matrix adjust. Identities = 229/628 (36%), Positives = 352/628 (56%), Gaps = 65/628 (10%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 VSL + + YL YA+S I RA+PD+RDG KPVHRR+++AM E+ ++ AA+KKSARIV Sbjct: 19 VSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIV 78 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGD +VYD++VR+AQ F RY LI GQGNFG++DG +AAA RYTE RM ++ Sbjct: 79 GDVIGKYHPHGDIAVYDTIVRMAQNFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMAKI 138 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 + +L ++E+ V+F Y+ + EP+V P++FP LL NG+SGIAVGMAT+IP HN+ + Sbjct: 139 SHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPALLVNGSSGIAVGMATNIPPHNLSDT 198 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 A L L+D PE I++L++ I PDFPTG I + E Y+ GRG +RA+ E Sbjct: 199 INACLRLLDAPETEIDELIDIIQAPDFPTGATIY-GLSGVREGYKTGRGRVVIRAKTHTE 257 Query: 260 EVGRGS--WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317 +G+ IV+ EIPYQV K++L+EKI EL+ K + + ++RDES + V+ Sbjct: 258 PIGKNGEREAIVIDEIPYQVNKAKLVEKIGELVREKTLEGISELRDESDKSGMRVVIELK 317 Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377 R+ + ++++ ++ L+ ++ F +NM VL G+ P+++ L IL E+L HRREV+ RR+ Sbjct: 318 RNENAEVVLNQLYKLTQLQDSFGINMVVLVDGQ-PRLLNLKQILSEFLRHRREVVTRRTL 376 Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSR-------------- 420 FR++ I +G +A NIDEII +I+ N + K +++R Sbjct: 377 FRLKKARHEGHIAEGKAVALSNIDEIIRLIKESPNAAEAKEKLLARPWRSSLVEEMLTRS 436 Query: 421 ----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458 + L+E Q DAIL + LR+L L++ +I NL+ + Sbjct: 437 GLDLEMMRPEGLAANIGLKEQGYYLSEIQADAILRMSLRNLTGLDQEEIVESYKNLMGKI 496 Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518 +L+ ++ I E+ E+K T+ G R + D A + +I + Sbjct: 497 IDFVDILSKPERITQIIRDELEEIK------TNYGDERRSEINPFGGDIA--DEDLIPQR 548 Query: 519 PITVVISNRGWIRSLKSHSVDL--------SALHFKEGDSLKIALHAHTTDRILLLSTDG 570 + V +++ G+I++ + A K+ D ++ A+T D ++ + G Sbjct: 549 EMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDYLMCFTNLG 608 Query: 571 KA-----YTLPAGNLLS-GRGHGEAIQL 592 K Y LP G S GR IQL Sbjct: 609 KCHWIKVYKLPEGGRNSRGRPINNVIQL 636 >gi|294671324|ref|ZP_06736175.1| hypothetical protein NEIELOOT_03033 [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291306956|gb|EFE48199.1| hypothetical protein NEIELOOT_03033 [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 848 Score = 375 bits (962), Expect = e-101, Method: Compositional matrix adjust. Identities = 233/628 (37%), Positives = 354/628 (56%), Gaps = 65/628 (10%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 VSL + + YL YA+S I RA+PD+RDG KPVHRR+++AM E+ ++ AA+KKSARIV Sbjct: 19 VSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIV 78 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGD +VYD++VR+AQ F RY LI GQGNFG++DGD AAA RYTE RM ++ Sbjct: 79 GDVIGKYHPHGDSAVYDTIVRMAQDFSMRYVLIDGQGNFGSVDGDGAAAMRYTEIRMAKI 138 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A +L ++E+ V+F Y+ + EP+V P++FP LL NG+SGIAVGMAT+IP HN+ + Sbjct: 139 AHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPALLVNGSSGIAVGMATNIPPHNLTDT 198 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 A L L+D PE I++L+ + PDFPTG I + E Y+ GRG +R + +E Sbjct: 199 INACLRLLDEPETEIDELINILQAPDFPTGATIY-GLSGVREGYKTGRGRVVMRGKTHIE 257 Query: 260 EVGRGS--WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317 +G+ I++ EIPYQV K++L+EKI EL+ K + + D+RDES + V+ Sbjct: 258 PIGKNGEREAIIIDEIPYQVNKAKLVEKIGELVREKTLEGVSDLRDESDKSGMRVVIELK 317 Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377 R+ + ++++ ++ L+ ++ F +NM L G+ P+++ L IL E+L HRREV+ RR+ Sbjct: 318 RNENAEVVLNQLYKLTQLQDSFGINMVALVDGQ-PRLLNLKQILAEFLRHRREVVTRRTL 376 Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDKPKPV---------------MVSR- 420 FR++ I +G +A NIDE+I +I+ + D P+ M+SR Sbjct: 377 FRLKKARHEGHIAEGKAVALSNIDEMIRLIKESADAPEAKEKLLSRAWRSGLVEDMLSRT 436 Query: 421 ----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458 + L+E Q DAIL + LR+L L++ +I + N++A Sbjct: 437 DLDLRMARPEGLPANLGLQEQGYYLSEIQADAILRMSLRNLTGLDQEEIVGDYKNIMA-- 494 Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518 + ID L K + +I IRE E+ T+ G R + D A + +I + Sbjct: 495 KIIDYLDILAKPE--RITQIIRE--ELEETKTNFGDERRSEINPFGGDIA--DEDLIPQR 548 Query: 519 PITVVISNRGWIRSLKSHSVDL--------SALHFKEGDSLKIALHAHTTDRILLLSTDG 570 + V +++ G+I++ + A K+ D ++ A+T D ++ + G Sbjct: 549 EMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDYLMCFTNLG 608 Query: 571 KA-----YTLPAGNLLS-GRGHGEAIQL 592 K Y LP G S GR IQL Sbjct: 609 KCHWIKVYKLPEGGRNSRGRPINNVIQL 636 >gi|254526250|ref|ZP_05138302.1| DNA gyrase, A subunit [Prochlorococcus marinus str. MIT 9202] gi|221537674|gb|EEE40127.1| DNA gyrase, A subunit [Prochlorococcus marinus str. MIT 9202] Length = 865 Score = 375 bits (962), Expect = e-101, Method: Compositional matrix adjust. Identities = 223/591 (37%), Positives = 346/591 (58%), Gaps = 32/591 (5%) Query: 7 SNSNTLVEENVKAVS--LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEM 64 S+++ L E+N + + LR + YL YA+S I RA+PD RDG KPVHRRI++AM E+ Sbjct: 7 SDNSGLSEDNDRIIQTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYEL 66 Query: 65 GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124 GL G ++K AR+VGEV+GK HPHGD +VYD+LVR+AQ F R PLI G GNFG++D D Sbjct: 67 GLTSGRPYRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRMPLIDGHGNFGSVDND 126 Query: 125 SAAAYRYTEARMTQVA-ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183 AA RYTE+R+ + E +L+ ++ + VDF D ++ EP V P++ P LL NG+SGI Sbjct: 127 PPAAMRYTESRLQSLTDESLLEDIESETVDFSDNFDGSQQEPTVLPARIPQLLLNGSSGI 186 Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243 AVGMAT+IP HN+ E+ ++I NP I +L E I GPDFPTGG I+ R+ I E++ Sbjct: 187 AVGMATNIPPHNLGELINGLKSIIKNPSIEDRELFEIIKGPDFPTGGQIL-GRDGIRETF 245 Query: 244 RLGRGGFRVRARWCVEEV---GRGSW-CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299 + G+G +R +E++ GR +++TE+P+Q K+ LIE+IA+L+ K++ + Sbjct: 246 KTGKGSITMRGVANIEQIKSTGRAEKDAVIITELPFQTNKAALIERIADLVNEKKLEGIS 305 Query: 300 DIRDESAED-VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLD 358 DIRDES D +RIV+ K R P +++ ++F L+ ++ F N+ L G P + L Sbjct: 306 DIRDESDRDGMRIVIELK-RDAYPQVVLNNLFKLTPLQNNFSANILALVEGE-PTTLSLR 363 Query: 359 GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKP 415 +L +L R E + RR++F ++ + R I+KGLL+A +DEII +IR+ + Sbjct: 364 KMLDVFLDFRVETIRRRTAFLLKKAEERDHIVKGLLLALDAMDEIINLIRSAKDSISARE 423 Query: 416 VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQI 475 + + L+ Q DAIL ++LR L LE +IK E + L + +LNS ++ + I Sbjct: 424 KLQNEHKLSSIQSDAILQMQLRRLTALEADKIKEEHNELTRKINFYQQILNSKERIFEII 483 Query: 476 ACEIREVKEIFSKSTDLGRRRTTFCEVSRA-DKATLQQAMIEKEPITVVISNRGWIRSLK 534 E+ ++ FS R+T ++ D L I + V+++ G+++ + Sbjct: 484 LEELNQIDGKFSSP-----RKTEILDLGGGLDDIDL----IANDRSVVLLTEAGYLKRMP 534 Query: 535 SHSVDLSA--------LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPA 577 + + ++ KE D +K+ + + D +LL S G AY LPA Sbjct: 535 VNDFESTSRGSRGKAGTKTKEDDDVKLFISCNDHDTLLLFSDRGVAYALPA 585 >gi|297243225|ref|ZP_06927160.1| type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit [Gardnerella vaginalis AMD] gi|296888759|gb|EFH27496.1| type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit [Gardnerella vaginalis AMD] Length = 876 Score = 374 bits (961), Expect = e-101, Method: Compositional matrix adjust. Identities = 230/622 (36%), Positives = 352/622 (56%), Gaps = 44/622 (7%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 VK + L+ + E YLAYALS I ERA+PD+RDG KPVHRR+I+AM + G + K + Sbjct: 43 VKNMDLQQEMRESYLAYALSVIVERALPDVRDGLKPVHRRVIYAMYDGGYRPDRGYNKCS 102 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+V+GK HPHGD ++YD+LVR+AQ + RY L+ GQGNFG+ D AAA RYTE RM Sbjct: 103 RVVGDVMGKYHPHGDSAIYDTLVRMAQSWSMRYMLVDGQGNFGSPGDDPAAAMRYTECRM 162 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 +A +++ +D+D VDF Y+ + EP V P++FPNLL NG++GIAVGMAT+IP HN+ Sbjct: 163 APLAMEMVRDIDKDTVDFLPNYDGKTQEPTVLPARFPNLLVNGSAGIAVGMATNIPPHNM 222 Query: 197 QEICEAALALIDNPEISIEKLLEYII----GPDFPTGGIIVESRESIVESYRLGRGGFRV 252 +E+ + +D+P+ S E+LLE +I GPDFPTG I+ + I ++YR GRG + Sbjct: 223 REVADGVHWALDHPDASKEELLEALIQRIKGPDFPTGATIL-GHKGIEQAYRTGRGLITM 281 Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV--R 310 RA EE+ +G C+VVTE+PYQV RL I E + +I + D+RDE++ R Sbjct: 282 RAVVNTEEI-KGRMCLVVTELPYQVNPDRLAASIREAVRDGKIQGIADMRDETSGRTGQR 340 Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370 +VL K R P +++ +++ S ++ F NM L G VP+ + LD ++ W+ H+ E Sbjct: 341 LVLVLK-RDAVPKVVLNNLYKHSQLQQTFGANMLALVDG-VPRTLSLDAFIRHWVTHQLE 398 Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQ 427 V+ RR+ + + + R IL+G L A IDE++A+IR+ + + +++ + E Q Sbjct: 399 VIDRRTRYLKREAEERDHILQGYLKALDMIDEVVALIRSSKDVETARTGLMNLLDVDEVQ 458 Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487 DAIL ++LR L LE +I E ++L+ + + +L S ++Q + E+ EI + Sbjct: 459 ADAILAMQLRRLAALERQKILDEHEDLMIKIADYNDILASPERQRKIVGDEL---DEIVA 515 Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------D 539 K D RRT S + +I +E + V ++ G+I+ K+ Sbjct: 516 KYGD--DRRTKILPFSGEMNV---EDLIAEENVVVTVTRAGYIKRTKADEYRAQHRGGKG 570 Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGH-------- 586 + +E D + T + +L + G KAY LP G+ S H Sbjct: 571 IKGAKLREDDVVDHFFLTSTHNWLLFFTNRGRVYRLKAYELPEGSRDSKGQHVANLLQFA 630 Query: 587 -GEAIQLLIDLNHNQDIVTAFV 607 GE IQ ++ + N D+ V Sbjct: 631 PGETIQAVLSIP-NYDVAKYLV 651 >gi|296113277|ref|YP_003627215.1| DNA gyrase subunit A [Moraxella catarrhalis RH4] gi|295920971|gb|ADG61322.1| DNA gyrase subunit A [Moraxella catarrhalis RH4] gi|326565271|gb|EGE15456.1| DNA gyrase subunit A [Moraxella catarrhalis 12P80B1] gi|326570961|gb|EGE20985.1| DNA gyrase subunit A [Moraxella catarrhalis BC7] gi|326573257|gb|EGE23225.1| DNA gyrase subunit A [Moraxella catarrhalis 101P30B1] Length = 888 Score = 374 bits (961), Expect = e-101, Method: Compositional matrix adjust. Identities = 250/746 (33%), Positives = 403/746 (54%), Gaps = 85/746 (11%) Query: 13 VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72 + ++V + + L+ YL YA+S I RA+PD+RDG KPVHRRI++AM E+G D+ + Sbjct: 1 MSDSVSPIGIVEELKRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYAMHELGNDYNKKY 60 Query: 73 KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132 KSAR+VG+VIGK HPHGD +VYD++VR+AQ F RY L++GQGNFG++DGD AA RYT Sbjct: 61 LKSARVVGDVIGKYHPHGDTAVYDAIVRMAQDFSLRYMLVNGQGNFGSMDGDPPAAMRYT 120 Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192 E +M ++ +L +D++ VD+ D Y+ P V P++ PNLL NG +GIAVGMAT++ Sbjct: 121 EMKMQKLTHKMLADLDKETVDWEDNYDGSMKMPSVLPARIPNLLVNGATGIAVGMATNMA 180 Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252 HN+ E+ A LA ++P IS ++L+ +I GPDFPTGGII R I+++YR G+G + Sbjct: 181 PHNLTEVLNACLAYAEDPNISTDELISHISGPDFPTGGII-HGRSGIIDAYRTGKGRLHI 239 Query: 253 RARWCVEEVG-----RGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-A 306 R R+ +E +G + I+ T+IPYQV K+ LI+ IA+L+ AK+I + +IRDES Sbjct: 240 RGRYHIEPMGDSGANKDRERIIFTQIPYQVNKANLIKHIADLVNAKKIEGITEIRDESDK 299 Query: 307 EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366 E VR+ + + R + ++++ ++F + +ET F +NM L G+ P++M L ++ ++ Sbjct: 300 EGVRVAIDLR-RGENCEVMVNNLFNQTPLETSFSINMVALDNGQ-PKLMTLRDLVAAFIR 357 Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN----------------- 409 HR+EV+ RR+ F + R +L+GL IA NID+I+ I+ Sbjct: 358 HRQEVVTRRTIFELNKALARGHLLEGLAIALANIDDILQTIKQSANRSQARENLLVRTWQ 417 Query: 410 -----------------------EDKPKPVMV----SRFSLTENQVDAILNLRLRSLRKL 442 ED P + +R+ L+ +QV+AIL+++L L L Sbjct: 418 SAGVVAMLDAAGAKSIRPEMIDGEDLKAPYGLIENKTRYRLSPDQVNAILDMQLHRLTGL 477 Query: 443 EEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS--KSTDLGRRRTTFC 500 E+ ++ E +L E ++ +L+ + E+ ++++ F + TD+ R F Sbjct: 478 EQDKLTGEYQEILGEIARLTLILDDFDVLMGVVRAELIDIRDEFGDERKTDIVDARHDF- 536 Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLK 552 +R D +I ++ + + +S G+ ++ K SA KE D ++ Sbjct: 537 --NRED-------LIPEQTVVLTVSRTGYAKTQPISDYQAQKRGGKGRSATAMKEDDVIE 587 Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNL-LSGRG-HGEAIQLLIDLNHNQDIVTAF---- 606 L T IL + G+ + L + ++ RG G + LI+L ++ +VTA Sbjct: 588 HLLVTSTHAHILCFTNTGRVFRLRGFEIPIASRGSKGRPLVNLINLESDE-LVTAILPVN 646 Query: 607 -VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT-GDHVAVV 664 + D + ++ G V S+ AN R G +E + V +T G+ ++ Sbjct: 647 DLKDENSFVFFATASGTVKRVALSQ-FANLRAGGLRAIDLAEGDTLIGVAITDGEQEIML 705 Query: 665 GENR-KLLIFSIDQIPEMSR-GKGVR 688 N K + F I MSR KGVR Sbjct: 706 FSNEGKAIRFKEQSIRAMSRVAKGVR 731 >gi|296313969|ref|ZP_06863910.1| DNA gyrase, A subunit [Neisseria polysaccharea ATCC 43768] gi|296839398|gb|EFH23336.1| DNA gyrase, A subunit [Neisseria polysaccharea ATCC 43768] Length = 918 Score = 374 bits (961), Expect = e-101, Method: Compositional matrix adjust. Identities = 233/628 (37%), Positives = 354/628 (56%), Gaps = 65/628 (10%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 VSL + + YL YA+S I RA+PD+RDG KPVHRR+++AM E+ ++ AA+KKSARIV Sbjct: 19 VSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIV 78 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGD +VYD++VR+AQ F RY LI GQGNFG++DGD AAA RYTE RM ++ Sbjct: 79 GDVIGKYHPHGDSAVYDTIVRMAQDFSMRYVLIDGQGNFGSVDGDGAAAMRYTEIRMAKI 138 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A +L ++E+ V+F Y+ + EP+V P++FP LL NG+SGIAVGMAT+IP HN+ + Sbjct: 139 AHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPALLVNGSSGIAVGMATNIPPHNLTDT 198 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 A L L+D PE I++L+ + PDFPTG I + E Y+ GRG +R + +E Sbjct: 199 INACLRLLDEPETEIDELINILQAPDFPTGATIY-GLSGVREGYKTGRGRVVMRGKTHIE 257 Query: 260 EVGRGS--WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317 +G+ I++ EIPYQV K++L+EKI EL+ K + + D+RDES + V+ Sbjct: 258 PIGKNGEREAIIIDEIPYQVNKAKLVEKIGELVREKTLEGVSDLRDESDKSGMRVVIELK 317 Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377 R+ + ++++ ++ L+ ++ F +NM L G+ P+++ L IL E+L HRREV+ RR+ Sbjct: 318 RNENAEVVLNQLYKLTQLQDSFGINMVALVDGQ-PRLLNLKQILAEFLRHRREVVTRRTL 376 Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDKPKPV---------------MVSR- 420 FR++ I +G +A NIDE+I +I+ + D P+ M+SR Sbjct: 377 FRLKKARHEGHIAEGKAVALSNIDEMIRLIKESADAPEAKEKLLSRAWRSGLVEDMLSRT 436 Query: 421 ----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458 + L+E Q DAIL + LR+L L++ +I + N++A Sbjct: 437 DLDLRMARPEGLPANLGLQEQGYYLSEIQADAILRMSLRNLTGLDQEEIVGDYKNIMA-- 494 Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518 + ID L K + +I IRE E+ T+ G R + D A + +I + Sbjct: 495 KIIDYLDILAKPE--RITQIIRE--ELEETKTNFGDERRSEINPFGGDIA--DEDLIPQR 548 Query: 519 PITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570 + V +++ G+I+ + + A K+ D ++ A+T D ++ + G Sbjct: 549 EMVVTLTHGGYIKIQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDYLMCFTNLG 608 Query: 571 KA-----YTLPAGNLLS-GRGHGEAIQL 592 K Y LP G S GR IQL Sbjct: 609 KCHWIKVYKLPEGGRNSRGRPINNVIQL 636 >gi|326575842|gb|EGE25765.1| DNA gyrase subunit A [Moraxella catarrhalis CO72] gi|326576926|gb|EGE26832.1| DNA gyrase subunit A [Moraxella catarrhalis O35E] Length = 888 Score = 374 bits (961), Expect = e-101, Method: Compositional matrix adjust. Identities = 250/746 (33%), Positives = 403/746 (54%), Gaps = 85/746 (11%) Query: 13 VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72 + ++V + + L+ YL YA+S I RA+PD+RDG KPVHRRI++AM E+G D+ + Sbjct: 1 MSDSVSPIGIVEELKRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYAMHELGNDYNKKY 60 Query: 73 KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132 KSAR+VG+VIGK HPHGD +VYD++VR+AQ F RY L++GQGNFG++DGD AA RYT Sbjct: 61 LKSARVVGDVIGKYHPHGDTAVYDAIVRMAQDFSLRYMLVNGQGNFGSMDGDPPAAMRYT 120 Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192 E +M ++ +L +D++ VD+ D Y+ P V P++ PNLL NG +GIAVGMAT++ Sbjct: 121 EMKMQKLTHKMLADLDKETVDWEDNYDGSMKMPSVLPARIPNLLVNGATGIAVGMATNMA 180 Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252 HN+ E+ A LA ++P IS ++L+ +I GPDFPTGGII R I+++YR G+G + Sbjct: 181 PHNLTEVLNACLAYAEDPNISTDELISHISGPDFPTGGII-HGRSGIIDAYRTGKGRLHI 239 Query: 253 RARWCVEEVG-----RGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-A 306 R R+ +E +G + I+ T+IPYQV K+ LI+ IA+L+ AK+I + +IRDES Sbjct: 240 RGRYHIEPMGDSGANKDRERIIFTQIPYQVNKANLIKHIADLVNAKKIEGITEIRDESDK 299 Query: 307 EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366 E VR+ + + R + ++++ ++F + +ET F +NM L G+ P++M L ++ ++ Sbjct: 300 EGVRVAIDLR-RGENCEVMVNNLFNQTPLETSFSINMVALDNGQ-PKLMTLRDLVAAFIR 357 Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN----------------- 409 HR+EV+ RR+ F + R +L+GL IA NID+I+ I+ Sbjct: 358 HRQEVVTRRTIFELNKALARGHLLEGLAIALANIDDILQTIKQSANRSQARENLLVRTWQ 417 Query: 410 -----------------------EDKPKPVMV----SRFSLTENQVDAILNLRLRSLRKL 442 ED P + +R+ L+ +QV+AIL+++L L L Sbjct: 418 SAGVVAMLDAAGAKSIRPEMIDGEDLKAPYGLIENKTRYRLSPDQVNAILDMQLHRLTGL 477 Query: 443 EEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS--KSTDLGRRRTTFC 500 E+ ++ E +L E ++ +L+ + E+ ++++ F + TD+ R F Sbjct: 478 EQDKLTGEYQEILGEIARLTLILDDFDVLMGVVRAELIDIRDEFGDERKTDIVDARHDF- 536 Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLK 552 +R D +I ++ + + +S G+ ++ K SA KE D ++ Sbjct: 537 --NRED-------LIPEQTVVLTVSRTGYAKTQPISDYQAQKRGGKGRSATAMKEDDVIE 587 Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNL-LSGRG-HGEAIQLLIDLNHNQDIVTAF---- 606 L T IL + G+ + L + ++ RG G + LI+L ++ +VTA Sbjct: 588 HLLVTSTHAHILCFTNTGRVFRLRGFEIPIASRGSKGRPLVNLINLESDE-LVTAILPVN 646 Query: 607 -VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT-GDHVAVV 664 + D + ++ G V S+ AN R G +E + V +T G+ ++ Sbjct: 647 DLKDENSFVFFATASGTVKRVALSQ-FANLRAGGLRAIDLAEGDTLIGVAITDGEQEIML 705 Query: 665 GENR-KLLIFSIDQIPEMSR-GKGVR 688 N K + F I MSR KGVR Sbjct: 706 FSNEGKAIRFKEQSIRAMSRVAKGVR 731 >gi|163838776|ref|YP_001623181.1| DNA gyrase subunit A [Renibacterium salmoninarum ATCC 33209] gi|162952252|gb|ABY21767.1| DNA gyrase subunit A [Renibacterium salmoninarum ATCC 33209] Length = 854 Score = 374 bits (961), Expect = e-101, Method: Compositional matrix adjust. Identities = 208/536 (38%), Positives = 327/536 (61%), Gaps = 20/536 (3%) Query: 9 SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68 + ++ + ++ V L+ ++ YL YA++ I RA+PD+RDG KPVHRR+++AM + G Sbjct: 5 TGEIITDRIEQVDLQTEMQRSYLDYAMAVIVGRALPDVRDGLKPVHRRVLYAMYDGGYRP 64 Query: 69 GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128 +F K AR+VGEV+G+ HPHGD ++YD+LVRL Q + RYPL GQGNFG+ D AAA Sbjct: 65 DRSFNKCARVVGEVMGQYHPHGDSAIYDALVRLIQDWTMRYPLALGQGNFGSPGNDGAAA 124 Query: 129 YRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188 RYTE +M +A +++ +D+ VDF+D Y+ ++ EPV+ P++FPNLL NG+SGIAVGMA Sbjct: 125 PRYTETKMAPLAMEMVRDIDKRTVDFQDNYDGKNQEPVILPARFPNLLVNGSSGIAVGMA 184 Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYII----GPDFPTGGIIVESRESIVESYR 244 T+IP HN++E+ E A + NP S E+LLE +I GPDFPTG I+ + I ++YR Sbjct: 185 TNIPPHNLREVAEGAQWYLANPTASKEELLEALIQRIKGPDFPTGAQIL-GHKGIEDAYR 243 Query: 245 LGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304 GRG +RA VEE+ + C+VVTE+PYQ L KIAEL+ +I + D+RDE Sbjct: 244 TGRGSITMRAVVNVEEI-QNRTCLVVTELPYQANPDNLAVKIAELVKDGKIGGIADLRDE 302 Query: 305 SAEDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362 ++ R+V+ K R +++ +++ + ++ F NM + G VP+ + LD ++ Sbjct: 303 TSGRTGQRLVVVLK-RDAVAKVVLNNLYKHTSLQDNFSANMLAIVDG-VPRTLSLDAFIR 360 Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVS 419 W+AH+ EV+ RR+ F + + R IL+GLL A +DE+IA+IR D+ + ++ Sbjct: 361 HWVAHQMEVIVRRTRFLLNEAEARAHILRGLLKALDALDEVIALIRRSPTVDEARGGLID 420 Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479 + + QV+AIL+++LR L LE +I+ E L E + +S+L S +Q ++ E+ Sbjct: 421 LLGIDDLQVNAILDMQLRRLAALERQKIQDENAKLELEIAEYNSILASEDRQRTIVSEEL 480 Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKS 535 E+ F RRT D + + +I +E + V I+ G+++ +S Sbjct: 481 AEIVNKFGDE-----RRTQIMLGYDGDMS--MEDLIPEEEMVVTITRGGYVKRTRS 529 >gi|288927538|ref|ZP_06421385.1| DNA gyrase, A subunit [Prevotella sp. oral taxon 317 str. F0108] gi|288330372|gb|EFC68956.1| DNA gyrase, A subunit [Prevotella sp. oral taxon 317 str. F0108] Length = 871 Score = 374 bits (961), Expect = e-101, Method: Compositional matrix adjust. Identities = 220/619 (35%), Positives = 352/619 (56%), Gaps = 33/619 (5%) Query: 6 ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65 + + T+ ++ + +++ ++ Y+ Y++S I RA+PD+RDGFKPVHRRI++ M +G Sbjct: 1 MDENQTIDQDRIIKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMLGLG 60 Query: 66 LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125 +KK AR+VG+V+GK HPHGD SVY +LVRLAQ + RY L+ GQGNFG++DGDS Sbjct: 61 NTSDKPYKKCARVVGDVLGKYHPHGDSSVYGALVRLAQDWNMRYTLVDGQGNFGSVDGDS 120 Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185 AAA RYTE R++++ E I+ +++D VD + ++ EP V P+K PNLL NG +GIAV Sbjct: 121 AAAMRYTECRLSKLGERIMDDLEKDTVDMEENFDATLQEPQVMPTKIPNLLVNGGNGIAV 180 Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245 GMAT++P+HN+ E+ + A IDNPEI E L+ +I PDFPTG I + + ++Y Sbjct: 181 GMATNMPTHNLAEVLDGCCAYIDNPEIDTEGLMLHIKAPDFPTGAYIY-GLQGVKDAYET 239 Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305 GRG +RA+ +E IV++EIPY V K++LIE IA+L+ R+ + + DES Sbjct: 240 GRGRIVLRAKAEIES-DESHDKIVISEIPYGVNKAQLIENIADLVKEGRLEGISNANDES 298 Query: 306 A-EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364 + +RIV+ K R + ++++ +F ++ +++ F +N L GR P+++ L +K + Sbjct: 299 GRQGMRIVVDVK-RDANANVVLNKLFKMTQLQSSFSVNNIALVKGR-PRLLTLKECVKYF 356 Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRF 421 + HR +V RR+ F ++ R IL+GL+IA NIDE++ IIRN P + RF Sbjct: 357 VEHRHDVTIRRTKFDLKKAQERAHILEGLIIACDNIDEVVQIIRNSKTPSEAQRNLEKRF 416 Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481 L E Q AI+++RL L L Q+ +E L ++ +L+ ++ + E+ E Sbjct: 417 ELDELQSKAIVDMRLSQLTGLRIEQLHAEYQELEELIARLQLILDDPEECKRVMKAELEE 476 Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL-------- 533 VKE F RRT E+ + + +P+ + +S+ G+I+ Sbjct: 477 VKEKFGDE-----RRT---EIIPDEHEFNAEDFYPNDPVVITVSHLGYIKRTPLSEFHEQ 528 Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGE 588 V + ++ D + A +L + G K Y +P G+ S G Sbjct: 529 ARGGVGSKGANTRDKDFTEYIYPATMHQTMLFFTKKGRCHWLKCYEIPEGDKTS---KGR 585 Query: 589 AIQLLIDLNHNQDIVTAFV 607 AIQ L++++ + D V AF+ Sbjct: 586 AIQNLLNIDAD-DSVNAFL 603 >gi|218281305|ref|ZP_03487793.1| hypothetical protein EUBIFOR_00358 [Eubacterium biforme DSM 3989] gi|218217490|gb|EEC91028.1| hypothetical protein EUBIFOR_00358 [Eubacterium biforme DSM 3989] Length = 827 Score = 374 bits (961), Expect = e-101, Method: Compositional matrix adjust. Identities = 240/711 (33%), Positives = 401/711 (56%), Gaps = 32/711 (4%) Query: 13 VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72 V+ NV SL + +R+ Y+ I+ERA+PD RDG KPV RRI++AM E G + + Sbjct: 6 VKHNVLKNSLEDIMADRFARYSKYIIQERALPDARDGLKPVQRRILYAMYEDGNTYNKPY 65 Query: 73 KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132 KSA+ VG VIG HPHGD SVYD++VR++Q + PLI QGN G+ID D AAA RYT Sbjct: 66 HKSAKTVGNVIGNYHPHGDSSVYDAMVRMSQNWKITNPLIDMQGNNGSIDDDPAAAMRYT 125 Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192 EAR+ ++++ +LQ +D+D V++ +++E EP V P++FPNLL NG +GIA G AT+IP Sbjct: 126 EARLARISDFLLQDIDKDTVEWAPNFSDEKMEPTVLPARFPNLLVNGITGIAAGYATNIP 185 Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252 HN+ E+ +A++ I +P+ S+E+L++++ GPDFPTGGI++ + I ++++ GRG RV Sbjct: 186 PHNLNEVIQASIYRISHPDCSLEELMQFVKGPDFPTGGIVM-GLDGIKQAFQTGRG--RV 242 Query: 253 RARWCVEEVG-RGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VR 310 R VE V R I++ EIPY+V KS L++KI E+ + K+I + D+RDES +R Sbjct: 243 LIRSKVEVVPLRTIKQIIIHEIPYEVIKSNLVKKIDEIRLNKKIDGILDVRDESDRTGLR 302 Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSM-GRVPQVMPLDGILKEWLAHRR 369 IV+ K S D +L ++ + + + N NV+++ + P M L +L +++HR Sbjct: 303 IVVDLKKDSNDEQILN---YLYKNTDLQISYNYNVIAIVNKAPVQMSLAMMLDAFISHRE 359 Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDK--PKPVMVSRFSLTEN 426 +V+ RRS F ++ R IL+GL+ A +DEII IIR ++DK K ++ RF TE Sbjct: 360 DVVIRRSKFDLKTKKERAHILEGLIKAVSVMDEIIHIIRKSKDKSHAKKNLIERFDFTEK 419 Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486 Q +AI+ +RL L + ++K+E L + +++ ++ + + E+ +V F Sbjct: 420 QAEAIVVMRLYRLTNTDVKELKAEFKQLQCDIAELEKIIRDKSELHKVMVEELEKVNAEF 479 Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA---L 543 + R EV ++AMI KE + ++ G+I+ + S + S+ Sbjct: 480 NTP----RLSKIVHEVKEI--VIDEKAMISKEECMITVTRDGYIKRVSMRSFNASSDSMT 533 Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQD 601 K+ DSL +HT ++ + G +P + + G I I ++ ++ Sbjct: 534 QRKDTDSLVCYGASHTLQTLIFFTNRGTYGYIPVYQIEEAKWKDLGGHISNYIKMDSSEK 593 Query: 602 IVTAFVYDSTCKLLVVSSKGNAFIVEESEI----IANTRKGKTFLKVSSEEKMKLVVKVT 657 I+ A+V D+ + V S +++ +E+ ++ + K T +K+ ++M + V ++ Sbjct: 594 IIAAYVLDAFKTGVHVVSASRHGMIKRTELKEFEVSRSNKTMTCMKIGGMDEM-ISVSLS 652 Query: 658 ---GDHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFK 704 D V +V E L++ ++QIP +S + KGV+ + IC + Sbjct: 653 YKPDDQVILVSEQGYGLMYPVEQIPLVSNKSKGVKAMNLAKDDCVASICIR 703 >gi|326561961|gb|EGE12294.1| DNA gyrase subunit A [Moraxella catarrhalis 46P47B1] Length = 872 Score = 374 bits (961), Expect = e-101, Method: Compositional matrix adjust. Identities = 250/746 (33%), Positives = 403/746 (54%), Gaps = 85/746 (11%) Query: 13 VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72 + ++V + + L+ YL YA+S I RA+PD+RDG KPVHRRI++AM E+G D+ + Sbjct: 1 MSDSVSPIGIVEELKRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYAMHELGNDYNKKY 60 Query: 73 KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132 KSAR+VG+VIGK HPHGD +VYD++VR+AQ F RY L++GQGNFG++DGD AA RYT Sbjct: 61 LKSARVVGDVIGKYHPHGDTAVYDAIVRMAQDFSLRYMLVNGQGNFGSMDGDPPAAMRYT 120 Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192 E +M ++ +L +D++ VD+ D Y+ P V P++ PNLL NG +GIAVGMAT++ Sbjct: 121 EMKMQKLTHKMLADLDKETVDWEDNYDGSMKMPSVLPARIPNLLVNGATGIAVGMATNMA 180 Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252 HN+ E+ A LA ++P IS ++L+ +I GPDFPTGGII R I+++YR G+G + Sbjct: 181 PHNLTEVLNACLAYAEDPNISTDELISHISGPDFPTGGII-HGRSGIIDAYRTGKGRLHI 239 Query: 253 RARWCVEEVG-----RGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-A 306 R R+ +E +G + I+ T+IPYQV K+ LI+ IA+L+ AK+I + +IRDES Sbjct: 240 RGRYHIEPMGDSGANKDRERIIFTQIPYQVNKANLIKHIADLVNAKKIEGITEIRDESDK 299 Query: 307 EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366 E VR+ + + R + ++++ ++F + +ET F +NM L G+ P++M L ++ ++ Sbjct: 300 EGVRVAIDLR-RGENCEVMVNNLFNQTPLETSFSINMVALDNGQ-PKLMTLRDLVAAFIR 357 Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN----------------- 409 HR+EV+ RR+ F + R +L+GL IA NID+I+ I+ Sbjct: 358 HRQEVVTRRTIFELNKALARGHLLEGLAIALANIDDILQTIKQSANRSQARENLLVRTWQ 417 Query: 410 -----------------------EDKPKPVMV----SRFSLTENQVDAILNLRLRSLRKL 442 ED P + +R+ L+ +QV+AIL+++L L L Sbjct: 418 SAGVVAMLDAAGAKSIRPEMIDGEDLKAPYGLIENKTRYRLSPDQVNAILDMQLHRLTGL 477 Query: 443 EEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS--KSTDLGRRRTTFC 500 E+ ++ E +L E ++ +L+ + E+ ++++ F + TD+ R F Sbjct: 478 EQDKLTGEYQEILGEIARLTLILDDFDVLMGVVRAELIDIRDEFGDERKTDIVDARHDF- 536 Query: 501 EVSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLK 552 +R D +I ++ + + +S G+ ++ K SA KE D ++ Sbjct: 537 --NRED-------LIPEQTVVLTVSRTGYAKTQPISDYQAQKRGGKGRSATAMKEDDVIE 587 Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNL-LSGRG-HGEAIQLLIDLNHNQDIVTAF---- 606 L T IL + G+ + L + ++ RG G + LI+L ++ +VTA Sbjct: 588 HLLVTSTHAHILCFTNTGRVFRLRGFEIPIASRGSKGRPLVNLINLESDE-LVTAILPVN 646 Query: 607 -VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT-GDHVAVV 664 + D + ++ G V S+ AN R G +E + V +T G+ ++ Sbjct: 647 DLKDENSFVFFATASGTVKRVALSQ-FANLRAGGLRAIDLAEGDTLIGVAITDGEQEIML 705 Query: 665 GENR-KLLIFSIDQIPEMSR-GKGVR 688 N K + F I MSR KGVR Sbjct: 706 FSNEGKAIRFKEQSIRAMSRVAKGVR 731 >gi|295425410|ref|ZP_06818108.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus amylolyticus DSM 11664] gi|295064912|gb|EFG55822.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus amylolyticus DSM 11664] Length = 826 Score = 374 bits (961), Expect = e-101, Method: Compositional matrix adjust. Identities = 222/633 (35%), Positives = 362/633 (57%), Gaps = 58/633 (9%) Query: 6 ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65 + N N + ++ V L + +L YA+S I RA+PD+RDG KPV RRI++ MSE+G Sbjct: 1 MDNDNQAQDRRIRNVDLTSMMRSSFLDYAMSVIVARALPDVRDGLKPVQRRILYGMSELG 60 Query: 66 LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125 + +KKSARIVGEV+GK HPHGD S+Y ++ +AQ F RY L+ G GNFG++DGD Sbjct: 61 VTPDKPYKKSARIVGEVMGKFHPHGDSSIYLAMAHMAQDFSYRYMLVDGHGNFGSVDGDE 120 Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185 AA RYTEARM+++A +L+ ++++ +D++ Y++ ++EPVV P++ PNLL NG +GIAV Sbjct: 121 PAAMRYTEARMSKIAVEMLRDINKNTIDWQRNYDDTENEPVVLPARIPNLLVNGANGIAV 180 Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245 GM T+IP HN++E+ L+ NP+++ + L++ I GPDFPT G I+ R I +Y Sbjct: 181 GMTTNIPPHNLKEVISGLHMLMKNPDVTTKDLMKVIPGPDFPT-GGIIMGRGGIYRAYET 239 Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305 G+G VRA+ +E G I+V+EIPY V K+ L++KIA+L K I + +RDES Sbjct: 240 GKGNIVVRAKTNIETEKSGRERIIVSEIPYMVNKAELVKKIADLAREKTIDGITGVRDES 299 Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365 + + R +++ ++F + M+ F +NM + G P + L +LK +L Sbjct: 300 DQTGMRITIDIRRDASASVVLNNLFKETQMQANFGMNMVAIVDG-APHFLTLKQMLKYYL 358 Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFS 422 H+ +V+ RR+ F + + R IL+GL IA +IDEI+ IIR + D K ++SRF Sbjct: 359 DHQEDVVTRRTKFELAKAEARAHILEGLRIALDHIDEIVKIIRSSQSSDIAKAALISRFG 418 Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNL----------LAEKEKIDSLLNSGKQQW 472 L + Q AIL++RL L LE ++++E +L LA+ E+ID + Sbjct: 419 LDDKQSQAILDMRLVRLTGLERDKVEAEYKDLQVKIADYKDILAKPERIDQI-------- 470 Query: 473 NQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIR 531 I E+ ++++ F RRT E+ ++ +++ + +IEK+ + + ++++G+I+ Sbjct: 471 --IYDELLDIQKRFGDE-----RRT---EIGASEVISIEDEDLIEKQNVLLTLTHKGYIK 520 Query: 532 SL-----KSHS---VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT--------- 574 + K+ + + + + GD + +++ T D +L + GK Y+ Sbjct: 521 RMPITEFKTQNRGGKGIKGMGVQNGDFTEHLIYSSTHDMLLFFTNKGKVYSKKAYEIPEF 580 Query: 575 ------LPAGNLLSGRGHGEAIQLLIDLNHNQD 601 LP NLL GE IQ +I++ D Sbjct: 581 GRTAKGLPIVNLLQLE-KGEKIQTVINIPEGAD 612 >gi|258650279|ref|YP_003199435.1| DNA gyrase subunit A [Nakamurella multipartita DSM 44233] gi|258553504|gb|ACV76446.1| DNA gyrase, A subunit [Nakamurella multipartita DSM 44233] Length = 831 Score = 374 bits (961), Expect = e-101, Method: Compositional matrix adjust. Identities = 265/781 (33%), Positives = 419/781 (53%), Gaps = 52/781 (6%) Query: 6 ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65 ++ N+ + + V ++ ++ ++ YA+S I RA+PD+RDG KPVHRR+++ M + G Sbjct: 1 MTGPNSGEHDRTEPVDIQQEMQRSFIDYAMSVIVSRALPDVRDGLKPVHRRVLYGMYDSG 60 Query: 66 LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125 + KS+R+VG+V+G HPHGD +YD++VR+AQP+ RYP+I GQGNFG++ D Sbjct: 61 FRPDRSTVKSSRVVGDVMGNYHPHGDSPIYDTVVRMAQPWSLRYPMIDGQGNFGSMGNDP 120 Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185 AA RYTE R+TQ+A L+L G+ E VD Y+ + EP V P++ PNLL NG+SGIAV Sbjct: 121 PAAMRYTECRLTQLAMLMLDGIGEKTVDMVPNYDNKTVEPTVLPARIPNLLVNGSSGIAV 180 Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEY----IIGPDFPTGGIIVESRESIVE 241 GMAT+IP HN++E+ A + ++NPE S E+LLE I GPDFPTG +IV ++ I + Sbjct: 181 GMATNIPPHNLREVASAVVWFLENPEASPEELLEASMERIQGPDFPTGALIV-GKDGIAD 239 Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301 +YR GRG R+RA +EE +G +VVTE+PYQV L+E IA L +I + DI Sbjct: 240 AYRTGRGSIRMRAVVNIEEDAKGRTILVVTELPYQVNPDNLVEAIAGLHKDGKIAGIADI 299 Query: 302 RDESAEDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359 DES++ + R+V+ K R +++ ++F + ++T F NM + G VP+ + LD Sbjct: 300 ADESSDRIGMRLVITLK-RDAVAKVVLANLFKHTALQTSFGANMLAIVDG-VPRTLRLDQ 357 Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPV 416 ++ ++AH+ EV+ RR+ +R+ + R IL+GL+ A +DE+IA+IR + ++ K Sbjct: 358 MISLYVAHQVEVIVRRTQYRLDKAEERAHILRGLVKALDMLDEVIALIRRSPSAEESKAG 417 Query: 417 MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476 ++ + E Q AIL+++LR L LE +I E LAE E++ + L + + Sbjct: 418 LMELLDVDEIQATAILDMQLRRLAALERQRIIDE----LAELERVIADLKDILAKPERQR 473 Query: 477 CEIR-EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKS 535 IR E+ E K D RRT D + +I E + V I+ G+ + K+ Sbjct: 474 AIIRDELTEAVDKHGD--DRRTRLVPY---DGDVSVEDLIAVEDVVVTITRTGYAKRTKT 528 Query: 536 HSVDLSALHFKEGDSLKIA------LHAH-----TTDRILLLSTDG-----KAYTLPAGN 579 DL + G ++ A + AH T D IL + G KAY LP N Sbjct: 529 ---DLYRAQRRGGKGVQGAALKQDDIVAHFFVCSTHDWILFFTNKGRVYRAKAYELPEAN 585 Query: 580 LLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIA-NTRKG 638 + RG A L + V + LV+++KG +V++SE+ A ++ + Sbjct: 586 -RNARGQHVANLLAFQPDERIAEVIQIPHYQAAPYLVLATKGG--LVKKSELAAFDSNRA 642 Query: 639 KTFLKVSSEEKMKLVVKV----TGDHVAVVGENRKLLIFSIDQ-IPEMSRGKGVRLQSYK 693 + V+ + +LV V D + + E + + + D+ + M R L Sbjct: 643 GGIVAVNLRDDDELVGAVLCDANADLLLISAEGQSIRFHATDETLRPMGRATSGVLGMRF 702 Query: 694 DGGISDVICFKICEGLTWIDSAGRSY-NRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLS 752 + G + + EG + + R Y R++ D G RGG G L + R GK + Sbjct: 703 NAGDELLSMSVVYEGAQVLVATERGYAKRTDIDEYPVQG-RGGKGVLTIQYDRRRGKLVG 761 Query: 753 S 753 + Sbjct: 762 A 762 >gi|229817002|ref|ZP_04447284.1| hypothetical protein BIFANG_02257 [Bifidobacterium angulatum DSM 20098] gi|229785747|gb|EEP21861.1| hypothetical protein BIFANG_02257 [Bifidobacterium angulatum DSM 20098] Length = 907 Score = 374 bits (961), Expect = e-101, Method: Compositional matrix adjust. Identities = 224/630 (35%), Positives = 358/630 (56%), Gaps = 33/630 (5%) Query: 12 LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71 +V E ++ L+ + E YLAYA+S I +RA+PD+RDG KPVHRR+++AM + G Sbjct: 49 MVGERIQVRDLQTEMRESYLAYAMSVIVDRALPDVRDGMKPVHRRVVYAMYDGGYRPDRG 108 Query: 72 FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131 + K AR+VGEV+GK HPHGD ++YD+LVR+AQ + RY L+ GQGNFG+ D AAA RY Sbjct: 109 YSKCARVVGEVMGKYHPHGDSAIYDTLVRMAQSWSMRYMLVDGQGNFGSPGDDPAAAMRY 168 Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191 TE RM +A +++ +D+D VDF Y+ + EP V P++FPNLL NG+SGIAVGMAT+I Sbjct: 169 TECRMAPLAMEMVRDIDKDTVDFLPNYDGKTQEPTVLPARFPNLLCNGSSGIAVGMATNI 228 Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYII----GPDFPTGGIIVESRESIVESYRLGR 247 P HN++E+ E +D+PE S E+LL+ +I GPDFPTG I+ + I ++YR GR Sbjct: 229 PPHNMREVAEGVHWALDHPEASREELLDNLIRIIKGPDFPTGATIL-GHKGIEQAYRTGR 287 Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307 G +RA EE+ +G C+VVTE+PYQV RL+ I E + +I + D+RDE++ Sbjct: 288 GLITMRAVVNTEEI-KGRMCLVVTELPYQVNPDRLVASIREAVRDGKIQGIADMRDETSG 346 Query: 308 DV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365 R+VL K R P +++ +++ S ++ F NM L G VP+ + LD ++ W+ Sbjct: 347 RTGQRLVLVLK-RDAVPKVVLNNLYKHSQLQQTFGANMLALVDG-VPRTLSLDAFIRHWI 404 Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFS 422 H+ +V+ RR+++ + + R IL+GLL A I+E+I +IR+ + +P ++ Sbjct: 405 NHQIDVVARRTAYLKREAEERDHILQGLLKALDAIEEVIKLIRSSQGREDARPKLMEFLD 464 Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482 + + Q DAIL+++L L +E +I E + L+ + + +L ++Q + E+ Sbjct: 465 IDQVQADAILSMQLVRLANMEAQKIVDEHNELMRKIADYNDILAKPERQRRIVGDEL--- 521 Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---- 538 EI +K D RRT S + +I +E + V +++ G+I+ K+ Sbjct: 522 DEIVAKYGD--ERRTKILPYSGEMNV---EDLIPEENVVVTVTHSGFIKRTKADEYRAQH 576 Query: 539 ----DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQL 592 + +E D + T + +L + G+ Y L A L G G+ + Sbjct: 577 RGGKGIKGAKLREDDVVDHFFLTSTHNWLLFFTNKGRVYRLKAYELPEGSRDSKGQHVAN 636 Query: 593 LIDLNHNQDIVTAFVYDS--TCKLLVVSSK 620 L+ ++ I T + K LV++++ Sbjct: 637 LLQFGPDETIQTVLSIPNYEVAKYLVLATR 666 >gi|310824712|ref|YP_003957070.1| DNA gyrase subunit A [Stigmatella aurantiaca DW4/3-1] gi|309397784|gb|ADO75243.1| DNA gyrase, A subunit [Stigmatella aurantiaca DW4/3-1] Length = 919 Score = 374 bits (961), Expect = e-101, Method: Compositional matrix adjust. Identities = 259/805 (32%), Positives = 423/805 (52%), Gaps = 89/805 (11%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 V++ + YL Y++S I RA+PD+RDG KPVHRR+++AM ++G A+KKSAR+V Sbjct: 27 VNIEDEMRRSYLDYSMSVIIGRALPDVRDGLKPVHRRVLYAMHDLGNTHNRAYKKSARVV 86 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGD SVY+++VRLAQ + RY L+ GQGNFG++DGDS AA RYTE RM ++ Sbjct: 87 GDVIGKYHPHGDASVYEAMVRLAQEWSLRYLLVDGQGNFGSVDGDSPAAMRYTEVRMDRL 146 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 AE +L +D++ VDF Y++ +EP+V P+KFPNLL NG++GIAVGM T+IP HN+ E+ Sbjct: 147 AEELLADIDKETVDFGPNYDDSLTEPLVMPTKFPNLLVNGSTGIAVGMTTNIPPHNMGEV 206 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 + L LID+P+ ++ L+++I GPDFPT I RE I +Y GRG +RAR +E Sbjct: 207 IDGTLHLIDHPQATVRDLMQFIPGPDFPTAATIT-GREGIARAYETGRGQITIRARTEIE 265 Query: 260 EVGRGSW-CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318 +G I++TEIPYQV K+RLIEKIA+L+ K++ + DIRDES + R Sbjct: 266 TSKKGDREAIIITEIPYQVNKARLIEKIADLVREKKLEGISDIRDESDRQGMRIFIELKR 325 Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378 +++ ++F ++ +ET F M + G+ P+ + L +L +++HRR+V+ RR+ + Sbjct: 326 DAISGVVLNNLFSMTPLETTFGAVMLAIDGGQ-PRTLNLKELLDRFISHRRDVITRRTRY 384 Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK------------------------ 414 ++ R+ I++GLL+A ID ++++IR P Sbjct: 385 ELRKALARLHIVEGLLVAQDLIDLVVSLIRASKDPDEARWGLMHILSSELYEHERFGNLP 444 Query: 415 -----------PVMVSR--------FSL---------TENQVDAILNLRLRSLRKLEEYQ 446 ++VSR F L +E Q IL +RL+ L L+ + Sbjct: 445 RIDYAQAKAQMEMLVSRARAEEPDYFGLEHKYEGQGFSEIQAQNILEMRLQRLTGLQREE 504 Query: 447 IKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRAD 506 + EL L+ + ++ +L N I E+++++ + +RRT E++ Sbjct: 505 LFKELLALVRDIARLRDILAHESSLLNVIKTELQDIRARYGD-----KRRT---EITGEV 556 Query: 507 KATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAH 558 + +I +E + V +S+ G++ R+ K + KE D + A Sbjct: 557 SEITSEDLIAEEDMVVTLSHTGYVKRSPLNEYRAQKRGGRGKTGATTKEDDFVTDLFVAS 616 Query: 559 TTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCK 613 T ++ ++T GK Y+L + S G+AI L+ ++ + V + Sbjct: 617 THAFLMPITTKGKLYSLKVHQIPQASRTSRGKAIINLVKFEEDEKLAQVLVTRDFPENRF 676 Query: 614 LLVVSSKGNAFIVEESEI--IANTRKGKTFLKVSSEEKMKLV-VKVT-GDHVAVVGENRK 669 + V+ KG +V+ +++ AN R + + EE +LV VK+T G ++ + Sbjct: 677 VFFVTKKG---VVKRTDLSAFANVRV-SGIIALGIEEGDELVAVKITDGSKDVLLSTAQG 732 Query: 670 LLI-FSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICE-GLTWIDSAGRSYNRSENDL 726 + I F +++ M R GV+ + DG +V+ + E T + Y + + Sbjct: 733 MSIRFPEEEVRSMGRQAYGVKGITLVDG--DEVVGADVVEKDATILTVTENGYGKRTQEA 790 Query: 727 LGWLGKRGGVGSLVPKGFPRSGKFL 751 + RGG G + K R+GK + Sbjct: 791 EYRVQGRGGKGIIDIKTTERNGKVV 815 >gi|317970446|ref|ZP_07971836.1| DNA gyrase subunit A [Synechococcus sp. CB0205] Length = 843 Score = 374 bits (961), Expect = e-101, Method: Compositional matrix adjust. Identities = 246/696 (35%), Positives = 384/696 (55%), Gaps = 45/696 (6%) Query: 30 YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89 YL YA+S I RA+PD RDG KPVHRRI++AM E+GL ++K AR+VGEV+GK HPH Sbjct: 5 YLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTSDRPYRKCARVVGEVLGKYHPH 64 Query: 90 GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV-AELILQGVD 148 GD +VYD+LVR+AQ F R PLI G GNFG++D D AA RYTE+R+ + + +L+ ++ Sbjct: 65 GDTAVYDALVRMAQDFSMRMPLIDGHGNFGSVDNDPPAAMRYTESRLRALTTDSLLEDIE 124 Query: 149 EDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208 + VDF D ++ EP V P++ P LL NG++GIAVGMAT+IP HN+ E+ + LALI Sbjct: 125 SETVDFIDNFDGSQQEPTVMPARIPQLLLNGSTGIAVGMATNIPPHNLTELIDGLLALIA 184 Query: 209 NPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEV---GRGS 265 NPE++ +L Y+ GPDFPTGG I+ R I E Y GRG +R +E V GR Sbjct: 185 NPELTDRELTGYVSGPDFPTGGQIL-GRRGIREMYETGRGSVTMRGVAAIETVEAKGRPD 243 Query: 266 W-CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDL 324 +++TE+PYQ K+ LIE+IAEL+ K++ + DIRDES D ++ R P + Sbjct: 244 RDAVIITELPYQTNKAALIERIAELVNDKKLEGIADIRDESDRDGMRIVIELRRDAYPQV 303 Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384 ++ ++F L+ +++ F M L G P ++ L +L+ +L R E + RR+ + ++ + Sbjct: 304 VLNNLFKLTPLQSNFSAYMLALVNGE-PVLLTLRKMLQVFLDFRVETIERRTRYLLRKAE 362 Query: 385 RRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAILNLRLRSLRK 441 R IL GLLIA N+D IIA+IR + + +V +F L+E Q DAIL ++LR L Sbjct: 363 ERDHILLGLLIALDNLDAIIALIRGAADTASARLELVEQFGLSEVQADAILQMQLRRLTA 422 Query: 442 LEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCE 501 LE +I+ E ++LLA+ +L ++ + I E+ ++ + RRT + Sbjct: 423 LEADKIRLEHEDLLAKITDYKDILARKERVYGLITDELGVIRSRYDSP-----RRTEILD 477 Query: 502 VSRADKATLQQA-MIEKEPITVVISNRGWIRSLKSHSVDLSA--LHFKEG------DSLK 552 V + L+ +I E V+++ G+++ + + ++ K G ++++ Sbjct: 478 V----EGGLEDIDLIANERSVVLLTENGYLKRMPVSEFEATSRGTRGKAGTKTQGEEAVR 533 Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGN--LLSGRGHGEAIQLLIDLNHNQDI-----VTA 605 + + + D +LL S G YT+PA + S G I L+ + + I V+ Sbjct: 534 LFISCNDHDSLLLFSDRGVVYTVPAYRVPMCSRAAKGTPIVQLLPIPREEQITSLLAVSE 593 Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV---VKVTGDHVA 662 F D+ +LV+ + G AN R + +S EE L + GD V Sbjct: 594 FTEDA---VLVMLTSGGYVKRTRLSAFANIRS-NGLIAISLEEGDALTWVRLAQPGDSVL 649 Query: 663 VVGENRKLLIF--SIDQIPEMSR-GKGVRLQSYKDG 695 + N + F S +++ + R +GVR + + G Sbjct: 650 IGSRNGMTIHFRLSDEELRPLGRTARGVRAMNLRPG 685 >gi|284928910|ref|YP_003421432.1| DNA gyrase subunit A [cyanobacterium UCYN-A] gi|284809369|gb|ADB95074.1| DNA gyrase subunit A [cyanobacterium UCYN-A] Length = 854 Score = 374 bits (961), Expect = e-101, Method: Compositional matrix adjust. Identities = 227/594 (38%), Positives = 346/594 (58%), Gaps = 33/594 (5%) Query: 11 TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70 T+ ++ + L + YL YA+S I RA+PD RDG KPVHRRI++AM E+GL Sbjct: 2 TIPQDRIIPTDLSNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLVPEK 61 Query: 71 AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130 F+K AR+VGEV+GK HPHGD +VYD+LVR+AQ F R PL+ G GNFG+ID D AA R Sbjct: 62 PFRKCARVVGEVLGKYHPHGDTAVYDALVRMAQNFSMRSPLVDGHGNFGSIDNDPPAAMR 121 Query: 131 YTEARMTQVA-ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189 YTE R+ ++ + +L+ ++ + VDF D ++ EPVV PS+ P LL NG+SGIAVGMAT Sbjct: 122 YTECRLRNLSTDALLRDIEFETVDFADNFDGSQKEPVVLPSRIPQLLLNGSSGIAVGMAT 181 Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249 +IP HN+ E+ + +ALI NPE+ + L++ I GPDFPTGG I+ R I E+Y GRG Sbjct: 182 NIPPHNLGELIDGTIALIHNPELEEKDLIKIIPGPDFPTGGQIL-GRSGIHEAYMTGRGS 240 Query: 250 FRVRARWCVEEV---GRGSW-CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305 +R +E + GR + I++T++PYQ KS LIE+IA+++ KRI + DIRDES Sbjct: 241 ITMRGVAQIETLEYQGRSNRDAIIITQLPYQTNKSALIERIADMVNDKRIDGISDIRDES 300 Query: 306 -AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364 E +RIV+ K R +++ +I+ + ++ F NM L G PQ++ L L + Sbjct: 301 DREGMRIVIELK-RDAHSRVVLNNIYKQTPVQANFGANMLALVKGE-PQLLTLKNFLTVF 358 Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRF 421 ++ R E + RRS + ++ + R +L+GLLIA ++D II+IIR+ D K ++ +F Sbjct: 359 ISFRVETIIRRSKYELRKAEERNHLLQGLLIALDSLDPIISIIRSADDSITAKKKLIDQF 418 Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481 L++ Q DAIL ++LR L LE +I +E L + ++ +L+ ++ I E+ + Sbjct: 419 ELSDVQADAILQMQLRRLTALEAEKIHAEHKELQIKIANLNDILSKKERIEAIIEEELVQ 478 Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL- 540 +K I G R T E+ + + +I E ++++ +G+I+ + S D Sbjct: 479 IKNIH------GTPRCT--EIIHDEGEIVDTDLIANEQAIILLTEQGYIKRMPVSSFDAQ 530 Query: 541 -------SALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLS 582 + KE D ++ L D +LL S G AY +P+ + S Sbjct: 531 QRATRGKAGAKIKENDVVEHFLTCCDHDVVLLFSDRGVVYATNAYQIPSSSRTS 584 >gi|157060396|gb|ABV03204.1| GyrA [Chlamydia trachomatis] Length = 436 Score = 374 bits (961), Expect = e-101, Method: Compositional matrix adjust. Identities = 200/435 (45%), Positives = 281/435 (64%), Gaps = 8/435 (1%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 EE + +L ++E YL Y++S I RA+PD RDG KP RRI++AM ++ L G + Sbjct: 5 EEIIVPKNLEEEMKESYLRYSMSVIISRALPDARDGLKPSQRRILYAMKQLNLTPGVKHR 64 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 K A+I G+ G HPHG++ +Y +LVR+AQ + RYPL+ GQGNFG+IDGD AAA RYTE Sbjct: 65 KCAKICGDTSGDYHPHGERVIYPTLVRMAQDWAMRYPLVDGQGNFGSIDGDPAAAMRYTE 124 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 AR+T A +L+ +D+D VD Y+E EPVVFPSKFPNLL NG+SGIAVGMAT+IP Sbjct: 125 ARLTHSAIFLLEDLDKDTVDMVPNYDETKYEPVVFPSKFPNLLCNGSSGIAVGMATNIPP 184 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E+ EA L ++ N + SIE +LE + GPDFPTGGII + E I +Y GRG R+R Sbjct: 185 HNLGELIEATLLVLANSQTSIEDILEVMPGPDFPTGGIICGT-EGIRSTYYTGRGKLRLR 243 Query: 254 ARWCVEE-VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRI 311 AR VEE + I++TE+PY V KSRLIE+IAELI K + + D+RDES +D +R+ Sbjct: 244 ARMHVEENSDKQRENIILTEMPYNVNKSRLIEQIAELINEKTLTGISDVRDESDKDGIRV 303 Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371 VL K + ++++ ++ +D++ F NM L +P+ M + ++ W+ HR +V Sbjct: 304 VLELK-KGESSEVVINRLYKFTDVQVTFGANMLALDKN-LPRTMNIHRMISAWIRHRMDV 361 Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQV 428 + RR+ + + + R IL+G L A +DE++ IR N++ K +V FS +E Q Sbjct: 362 IRRRTRYELNKAEARAHILEGFLKALSCMDEVVKTIRESSNKEHAKQQLVELFSFSEAQA 421 Query: 429 DAILNLRLRSLRKLE 443 AIL LRL L LE Sbjct: 422 LAILELRLYQLTGLE 436 >gi|171741729|ref|ZP_02917536.1| hypothetical protein BIFDEN_00820 [Bifidobacterium dentium ATCC 27678] gi|283454965|ref|YP_003359529.1| DNA gyrase subunit A [Bifidobacterium dentium Bd1] gi|306823991|ref|ZP_07457365.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Bifidobacterium dentium ATCC 27679] gi|309801965|ref|ZP_07696079.1| DNA gyrase, A subunit [Bifidobacterium dentium JCVIHMP022] gi|171277343|gb|EDT45004.1| hypothetical protein BIFDEN_00820 [Bifidobacterium dentium ATCC 27678] gi|283101599|gb|ADB08705.1| DNA gyrase subunit A [Bifidobacterium dentium Bd1] gi|304552989|gb|EFM40902.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Bifidobacterium dentium ATCC 27679] gi|308221413|gb|EFO77711.1| DNA gyrase, A subunit [Bifidobacterium dentium JCVIHMP022] Length = 889 Score = 374 bits (960), Expect = e-101, Method: Compositional matrix adjust. Identities = 225/630 (35%), Positives = 356/630 (56%), Gaps = 33/630 (5%) Query: 12 LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71 + E ++ LR + + YL+YA+S I +RA+PD+RDG KPVHRR+I+AM + G Sbjct: 35 MTGERIQKKDLRQEMRDSYLSYAMSVIVDRALPDVRDGLKPVHRRVIYAMYDGGYRPDRG 94 Query: 72 FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131 + K AR+VGEV+GK HPHGD ++YD+LVR+AQ + RY L+ GQGNFG+ D AAA RY Sbjct: 95 YSKCARVVGEVMGKYHPHGDSAIYDTLVRMAQSWSMRYMLVDGQGNFGSPGDDPAAAMRY 154 Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191 TE RM +A +++ +D+D VDF Y+ + EP V P++FPNLL NG+SGIAVGMAT+I Sbjct: 155 TECRMAPLAMEMVRDIDKDTVDFLPNYDGKTQEPTVLPARFPNLLCNGSSGIAVGMATNI 214 Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYII----GPDFPTGGIIVESRESIVESYRLGR 247 P HN++E+ E +D+PE S E+LL+ +I GPDFPTG I+ + I ++YR GR Sbjct: 215 PPHNMREVAEGVHWALDHPEASREELLDNLIRIIKGPDFPTGATIL-GHKGIEQAYRTGR 273 Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307 G +RA EE+ +G C+V+TE+PYQV RL+ I E + +I + D+RDE++ Sbjct: 274 GLITMRAVVNTEEI-KGRMCLVITELPYQVNPDRLVVSIREAVRDGKIQGIADMRDETSG 332 Query: 308 DV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365 R+VL K R P +++ +++ S ++ F NM L G VP+ + LD ++ W+ Sbjct: 333 RTGQRLVLVLK-RDAVPKVVLNNLYKHSQLQQTFGANMLALVDG-VPRTLSLDAFIRHWV 390 Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFS 422 +H+ +V+ RR+++ + + R IL+G L A IDE+IA+IR + + ++ Sbjct: 391 SHQLDVIARRTAYLKREAEERDHILQGYLKALDMIDEVIALIRASESAETARTGLMDLLD 450 Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482 + E Q DAIL ++LR L LE +I E + L+ + + +L ++Q + E+ Sbjct: 451 VDEVQADAILAMQLRRLAALERQKILDEHNELMRKIADYNDILAKPERQRKIVGDEL--- 507 Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV---- 538 EI +K D RRT S + +I +E + V +++ G+I+ K+ Sbjct: 508 DEIVAKYGD--ERRTRILPYSGEMNV---EDLIAEENVVVTVTHSGFIKRTKADEYRAQH 562 Query: 539 ----DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQL 592 + +E D + T + +L + G+ Y L A L G G+ + Sbjct: 563 RGGKGIKGAKLREDDVVDHFFLTSTHNWLLFFTNKGRVYRLKAYELPEGSRDSKGQHVAN 622 Query: 593 LIDLNHNQDIVTAFVYDS--TCKLLVVSSK 620 L+ ++ I T + K LV++++ Sbjct: 623 LLQFGPDEAIQTVLSIPNYEVAKYLVLATR 652 >gi|304404373|ref|ZP_07386034.1| DNA gyrase, A subunit [Paenibacillus curdlanolyticus YK9] gi|304346180|gb|EFM12013.1| DNA gyrase, A subunit [Paenibacillus curdlanolyticus YK9] Length = 814 Score = 374 bits (960), Expect = e-101, Method: Compositional matrix adjust. Identities = 235/685 (34%), Positives = 385/685 (56%), Gaps = 28/685 (4%) Query: 28 ERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLH 87 +R+ Y+ I++RAIPD+RDG KPV RRI++AM + G ++KSA+ VG+V+G H Sbjct: 18 DRFGRYSKYIIQDRAIPDVRDGLKPVQRRILYAMYDSGNTPDKPYRKSAKTVGDVMGNYH 77 Query: 88 PHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGV 147 PHGD S+Y+ +VR+AQP+ + L+ G GN+G+ D D AA RYTEAR++ +A +L+ + Sbjct: 78 PHGDSSIYEGMVRMAQPWKMGHMLVDGHGNWGSQDDDPPAAMRYTEARLSTIAMELLRDI 137 Query: 148 DEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALI 207 D+ V F+D ++ EPVV PS++PNLL NG SGI+ G AT IP HN++EI +A AL+ Sbjct: 138 DKRTVPFKDNFDNTTKEPVVLPSRYPNLLVNGVSGISAGFATEIPPHNLREIIDACFALM 197 Query: 208 DNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWC 267 NP +++ +L+ + GPDFPTGG I+ E I E+Y G+G +R++ +E+V G Sbjct: 198 ANPSMTVAELMTIVRGPDFPTGGTIM-GEEGIREAYASGKGRIYIRSKAEIEDVRGGKQQ 256 Query: 268 IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKNRSLDPDLLM 326 IV+TEIPYQV KSRL+ + + + KR+ + ++RDES + +RIV+ K + D ++ Sbjct: 257 IVITEIPYQVVKSRLVTAMETIRLEKRVEGIAEVRDESGRNGLRIVVELK-KDADAQGIL 315 Query: 327 ESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRR 386 +F +D++ F NM V + + P+ + L +L ++ H++EV+ R+ F ++ + R Sbjct: 316 AYLFKKTDLQVTFNFNM-VAIVNKAPRQLGLKEMLAAYIDHQKEVVTNRTRFDLEKAEDR 374 Query: 387 VEILKGLLIAYLNIDEIIAII---RNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLE 443 +L+GL+ A +DEIIA I +N + +VS+F TE Q DAIL L+L L LE Sbjct: 375 AHVLEGLVKALNLLDEIIATIKASKNRQDAQNNLVSKFGFTERQADAILTLQLYRLTNLE 434 Query: 444 EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVS 503 Q++ EL + S+L S K+ + I E+ E++ F + RR EV Sbjct: 435 ITQLEKELLETQKRIAYLQSILASEKKLLSVIREEMLEIRTKFG----IDRRSDIRGEVE 490 Query: 504 RADKATLQQAMIEKEPITVVISNRGWIR-----SLKSHSVDLSALHFKEGDSLKIALHAH 558 K L + M++ E + + +S G+I+ S +L + K+GD ++ L + Sbjct: 491 EL-KVNL-EVMVQSEDVLLTVSREGYIKRTTMLSYTRSGGELESAGVKDGDVVRHLLSVN 548 Query: 559 TTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAFV----YD-ST 611 T D +LL + G+ + LP + + +G A+ +I L+ +D V V +D ++ Sbjct: 549 TIDSLLLFTKKGQYFVLPVHQVPEFKWKDNGTALVNVIPLS-KEDSVIGIVPIRDFDQAS 607 Query: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLL 671 LL ++ +G E E +N KV +++ V++ + ++ + + Sbjct: 608 ASLLFITKRGQVKRTELKEYKSNRSTAIAACKVGDGDEVIAVLESNSNQELLLVSRQGMA 667 Query: 672 I-FSIDQIPEMSR-GKGVRLQSYKD 694 I F ++ M R GVR KD Sbjct: 668 IRFPETEVNPMGRVAAGVRGMQLKD 692 >gi|301630199|ref|XP_002944211.1| PREDICTED: DNA gyrase subunit A-like, partial [Xenopus (Silurana) tropicalis] Length = 813 Score = 374 bits (960), Expect = e-101, Method: Compositional matrix adjust. Identities = 218/550 (39%), Positives = 330/550 (60%), Gaps = 23/550 (4%) Query: 47 RDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFV 106 RDG KPVHRR+++AM E+ D+ +KKSARIVG+VIGK HPHGD +VYD++VR+AQ F Sbjct: 10 RDGLKPVHRRVLYAMHELNNDWNRPYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQDFS 69 Query: 107 QRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPV 166 R+ L+ GQGNFG++DGDSAAA RYTE R++++A +L + ++ VDF Y+ + EP+ Sbjct: 70 LRHMLVDGQGNFGSVDGDSAAAMRYTEIRLSKIAHEMLADIAKETVDFGPNYDGSEQEPL 129 Query: 167 VFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDF 226 V P++ PNLL NG++GIAVGMAT+IP HN+ E+ +A L L+ +PE SI+ L+E I PDF Sbjct: 130 VLPTRLPNLLVNGSAGIAVGMATNIPPHNLNEVVDACLHLLRHPEASIDALMEIIPAPDF 189 Query: 227 PTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS-WCIVVTEIPYQVQKSRLIEK 285 PT GII + + YR GRG +RA+ E++ RG I+V E+PYQV K L E+ Sbjct: 190 PTAGIIY-GINGVKDGYRTGRGKVVMRAKVHFEDIDRGQRQAIIVDELPYQVNKKTLQER 248 Query: 286 IAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNV 345 +AEL+ K++ + I+DES + ++ R P++++ +++ + ++ F +NM Sbjct: 249 MAELVHEKKLEGISHIQDESDKSGMRLVIELKRGEVPEVVLNNLYKQTQLQDTFGMNMVA 308 Query: 346 LSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIA 405 L G+ P++ L ++ +L HRREV+ RR+ F ++ R +L+GL +A NIDE I Sbjct: 309 LVDGQ-PRLCNLKELIAVFLQHRREVVTRRTVFELRKARDRGHVLEGLAVALANIDEFIR 367 Query: 406 IIRNEDKP---KPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKID 462 IIR P K ++S + L++ Q IL +RL+ L LE+ +I +E ++A E + Sbjct: 368 IIRESPTPPVAKAELMSLYRLSDTQAQEILQMRLQRLTGLEQDKIVAEYKEVMAHIEDLL 427 Query: 463 SLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITV 522 +L ++ I E+ V+E F + T LG RR+ E S D +T + +I + V Sbjct: 428 DILAKPERVSTIIGEELTAVREEFGQ-TKLGARRSEI-EHSAQDLST--EDLITPTDMVV 483 Query: 523 VISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT 574 +S+ G+I R+ K A KE D + A+T D IL S G+ Y Sbjct: 484 TLSHTGYIKSQPLSEYRAQKRGGRGKQATATKEDDWIDQLFIANTHDYILCFSNRGRLYW 543 Query: 575 L-----PAGN 579 L PAG+ Sbjct: 544 LKVWEVPAGS 553 >gi|288926995|ref|ZP_06420890.1| DNA gyrase, A subunit [Prevotella buccae D17] gi|288336241|gb|EFC74627.1| DNA gyrase, A subunit [Prevotella buccae D17] Length = 881 Score = 374 bits (960), Expect = e-101, Method: Compositional matrix adjust. Identities = 218/611 (35%), Positives = 347/611 (56%), Gaps = 27/611 (4%) Query: 11 TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70 T+ + + +++ ++ Y+ Y++S I RA+PD+RDGFKPVHRRI++ M +G Sbjct: 6 TIDHDRILKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMLGIGNTSDK 65 Query: 71 AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130 +KK AR+VGEV+GK HPHGD SVY +LVR+ Q + RY L+ GQGNFG++DGDS AA R Sbjct: 66 PYKKCARVVGEVLGKYHPHGDSSVYGALVRMGQDWNMRYTLVDGQGNFGSVDGDSPAAMR 125 Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190 YTE R++++ E ++ +++D VD + +++ +EP V P+K PNLL NG +GIAVGMAT+ Sbjct: 126 YTECRLSKMGEHVMDDLEKDTVDMTNNFDDTLTEPSVMPTKIPNLLVNGGNGIAVGMATN 185 Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250 +P+HN+ E+ + A IDNPEI +E L+ YI PDFPTG I + + ++Y GRG Sbjct: 186 MPTHNLGEVIDGCCAYIDNPEIDLEGLMHYIKAPDFPTGAYIY-GIQGVKDAYETGRGRV 244 Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDV 309 +RA+ +E IV+TEIPY V K++LIE IAEL+ +I + + DES + + Sbjct: 245 VMRAKAEIES-DESHDKIVITEIPYGVNKAQLIEYIAELVKEGKIDGISNANDESGRQGM 303 Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369 RIV+ K R + ++++ +F ++ +++ F +N L GR P+++ L +K ++ HR Sbjct: 304 RIVIDVK-RDANANVILNKLFKMTALQSAFSVNNIALVNGR-PRLLSLKECVKYFVEHRH 361 Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTEN 426 +V RR+ + ++ R IL+GL+IA NIDE++ IIR P + RF+L E Sbjct: 362 DVTIRRTKYDLRKAQERAHILEGLIIACDNIDEVVHIIRASKTPADAQRNLEERFNLDEL 421 Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486 Q AI+++RL L L Q+ +E + L + + +LN + + E++EVKE + Sbjct: 422 QSKAIVDMRLSQLTGLRMDQLHAEYEELERMIDYYNRILNDPELCKQVMKDELQEVKEKY 481 Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSV 538 RRT E+ + + + +P+ + +S+ G+I R V Sbjct: 482 GDP-----RRT---EIKYSSEEFNPEDFYPNDPVVITVSHMGYIKRTPLSEFREQARGGV 533 Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDL 596 +E D + A +L + G+ Y L + G G AIQ L+++ Sbjct: 534 GSKGARHREQDFTEYIYPATMHQTMLFFTKKGRCYWLKCYEIPEGDRNSKGRAIQNLLNI 593 Query: 597 NHNQDIVTAFV 607 D V AF+ Sbjct: 594 -EGDDQVNAFL 603 >gi|192382560|gb|ACF04301.1| GyrA [Neisseria lactamica] Length = 912 Score = 374 bits (960), Expect = e-101, Method: Compositional matrix adjust. Identities = 228/628 (36%), Positives = 351/628 (55%), Gaps = 65/628 (10%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 VSL + + YL YA+S I RA+PD+RDG KPVHRR+++AM E+ ++ AA+KKSARIV Sbjct: 19 VSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIV 78 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGD +VYD++VR+AQ F RY LI GQGNFG++DG +AAA RYTE RM ++ Sbjct: 79 GDVIGKYHPHGDTAVYDTIVRMAQNFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMAKI 138 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 + +L ++E+ V+F Y+ + EP+V P++FP LL NG+SGIAVGMAT+IP HN+ + Sbjct: 139 SHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPALLVNGSSGIAVGMATNIPPHNLSDT 198 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 A L L+D PE I++L++ I PDFPTG I + E Y+ GRG +RA+ E Sbjct: 199 INACLRLLDAPETEIDELIDIIQAPDFPTGATIY-GLSGVREGYKTGRGRVVIRAKTHTE 257 Query: 260 EVGRGS--WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317 +G+ IV+ EIPYQV K++L+EKI EL+ K + + ++RDES + V+ Sbjct: 258 PIGKNGEREAIVIDEIPYQVNKAKLVEKIGELVREKTLEGISELRDESDKSGMRVVIELK 317 Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377 R+ + ++++ ++ L+ ++ F +NM VL G+ P+++ L IL E+L HRREV+ RR+ Sbjct: 318 RNENAEVVLNQLYKLTQLQDSFGINMVVLVDGQ-PRLLNLKQILSEFLRHRREVVTRRTL 376 Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSR-------------- 420 FR++ I +G +A NIDEII +I+ N + K +++R Sbjct: 377 FRLKKARHEGHIAEGKAVALSNIDEIIRLIKESPNAVEAKEKLLARSWRSSLVEEMLTRS 436 Query: 421 ----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458 + L+E Q DAIL + LR+L L+ +I NL+ + Sbjct: 437 GLDLEMMRPEGLAANIGLKEQGYYLSEIQADAILRMSLRNLTGLDREEIVESYKNLMGKI 496 Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518 +L+ ++ I E+ E+K T+ G R E++ + +I + Sbjct: 497 IDFVDILSKPERITRIIRDELEEIK------TNYGDER--LSEINPFGGDIADEDLIPQR 548 Query: 519 PITVVISNRGWIRSLKSHSVDL--------SALHFKEGDSLKIALHAHTTDRILLLSTDG 570 + V +++ G+I++ + A K+ D ++ A+T D ++ + G Sbjct: 549 EMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDYLMCFTNLG 608 Query: 571 KA-----YTLPAGNLLS-GRGHGEAIQL 592 K Y LP G S GR IQL Sbjct: 609 KCHWIKVYKLPEGGRNSRGRPINNVIQL 636 >gi|326570224|gb|EGE20269.1| DNA gyrase subunit A [Moraxella catarrhalis BC8] Length = 888 Score = 374 bits (960), Expect = e-101, Method: Compositional matrix adjust. Identities = 245/744 (32%), Positives = 397/744 (53%), Gaps = 81/744 (10%) Query: 13 VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72 + ++V + + L+ YL YA+S I RA+PD+RDG KPVHRRI++AM E+G D+ + Sbjct: 1 MSDSVSPIGIVEELKRSYLDYAMSVIVSRALPDVRDGLKPVHRRILYAMHELGNDYNKKY 60 Query: 73 KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132 KSAR+VG+VIGK HPHGD +VYD++VR+AQ F RY L++GQGNFG++DGD AA RYT Sbjct: 61 LKSARVVGDVIGKYHPHGDTAVYDAIVRMAQDFSLRYMLVNGQGNFGSMDGDPPAAMRYT 120 Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192 E +M ++ +L +D++ VD+ D Y+ P V P++ PNLL NG +GIAVGMAT++ Sbjct: 121 EMKMQKLTHKMLADLDKETVDWEDNYDGSMKMPSVLPARIPNLLVNGATGIAVGMATNMA 180 Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252 HN+ E+ A LA ++P IS ++L+ +I GPDFPTGGII R I+++YR G+G + Sbjct: 181 PHNLTEVLNACLAYAEDPNISTDELISHISGPDFPTGGII-HGRSGIIDAYRTGKGRLHI 239 Query: 253 RARWCVEEVG-----RGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307 R R+ +E +G + I+ T+IPYQV K+ LI+ IA+L+ AK+I + +IRDES + Sbjct: 240 RGRYHIEPMGDSGANKDRERIIFTQIPYQVNKANLIKHIADLVNAKKIEGITEIRDESDK 299 Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367 + V R + ++++ ++F + +ET F +NM L G+ P++M L ++ ++ H Sbjct: 300 EGVRVAIDLRRGENCEVMVNNLFNQTPLETSFSINMVALDNGQ-PKLMTLRDLVAAFIRH 358 Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN------------------ 409 R+EV+ RR+ F + R +L+GL IA NID+I+ I+ Sbjct: 359 RQEVVTRRTIFELNKALARGHLLEGLAIALANIDDILQTIKQSANRSQARENLLVRTWQS 418 Query: 410 ----------------------EDKPKPVMV----SRFSLTENQVDAILNLRLRSLRKLE 443 ED P + +R+ L+ +QV+AIL+++L L LE Sbjct: 419 AGVVAMLDAAGAKSIRPEMIDGEDLKAPYGLIENKTRYRLSPDQVNAILDMQLHRLTGLE 478 Query: 444 EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS--KSTDLGRRRTTFCE 501 + ++ E +L E ++ +L+ + E+ ++++ F + TD+ R F Sbjct: 479 QDKLTGEYQEILGEIARLTLILDDFDVLMGVVRAELIDIRDEFGDERKTDIVDARHDF-- 536 Query: 502 VSRADKATLQQAMIEKEPITVVISNRGWIRS--------LKSHSVDLSALHFKEGDSLKI 553 +R D +I ++ + + +S G+ ++ K SA KE D ++ Sbjct: 537 -NRED-------LIPEQTVVLTVSRTGYAKTQPISDYQAQKRGGKGRSATAMKEDDVIEH 588 Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNL-LSGRG-HGEAIQLLIDLNHNQDIVTAF----V 607 L T IL + G+ + L + ++ RG G + LI+L ++ + + Sbjct: 589 LLVTSTHAHILCFTNTGRVFRLRGFEIPIASRGSKGRPLVNLINLESDESVTAILPVNDL 648 Query: 608 YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT-GDHVAVVGE 666 D + ++ G V S+ AN R G +E + V +T G+ ++ Sbjct: 649 KDENSFVFFATASGTVKRVALSQ-FANLRAGGLRAIDLAEGDTLIGVAITDGEQEIMLFS 707 Query: 667 NR-KLLIFSIDQIPEMSR-GKGVR 688 N K + F I MSR KGVR Sbjct: 708 NEGKAIRFKEQSIRAMSRVAKGVR 731 >gi|13541373|ref|NP_111061.1| DNA gyrase subunit A [Thermoplasma volcanium GSS1] gi|14324757|dbj|BAB59684.1| DNA gyrase subunit a [Thermoplasma volcanium GSS1] Length = 792 Score = 374 bits (960), Expect = e-101, Method: Compositional matrix adjust. Identities = 248/750 (33%), Positives = 406/750 (54%), Gaps = 48/750 (6%) Query: 26 LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85 +++ YL YA+S I RAIPD RDG KPV RR+++AM E+ + +KK ARIVGE +GK Sbjct: 10 IKKSYLEYAMSVIVSRAIPDARDGLKPVQRRVLYAMRELNVTHDKPYKKCARIVGETMGK 69 Query: 86 LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145 HPHGD ++YD+LVR+AQ F RYPL+ GQGNFG+IDGDS AA RYTEAR+TQ AE +++ Sbjct: 70 YHPHGDMAIYDALVRMAQDFSLRYPLVDGQGNFGSIDGDSPAAMRYTEARLTQFAEDMME 129 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 +DE+ V+FR ++ EP PSK PNLL NG+SGIAVGMAT++ HN+ EI +A Sbjct: 130 DIDEETVNFRLNFDGTLPEPEYLPSKVPNLLVNGSSGIAVGMATNMVPHNLSEISDAIKY 189 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265 + N S++ LL+ + GPDFP GGI+ S++ ++E+YR G+G V+ E R Sbjct: 190 ELRNRSCSVDDLLKIVKGPDFPGGGIVFYSKD-LIEAYRTGKGKVIVQGEVDTSEERR-- 246 Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKNRSLDPDL 324 I++ +PY V KS L+E IA L I + DI+DES + +RIV+ ++ L P L Sbjct: 247 --IIIKSLPYGVNKSVLVESIANLAKNGIIKDITDIKDESDRNGIRIVIRVRDEDLKP-L 303 Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384 +M ++ +D+ET + +N++ +G P+++ L +L +++ HR +V+ +RS +R++ + Sbjct: 304 VMNQLYEHTDLETTIGI-INLVLVGNQPKLLNLKQLLDQFIDHRLDVILKRSRYRLEKKN 362 Query: 385 RRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDAILNLRLRSLRK 441 R ++L G+L A NID ++ I+R D K + F+L + QV AIL +RL+ L Sbjct: 363 ERHDVLSGVLTAIDNIDRVVEIVRGSDDVQKASETLKKTFNLNDRQVKAILEMRLQRLVH 422 Query: 442 LEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCE 501 +E + +EL ++ E + ++ S +++ + EI E+K+ + D R + F E Sbjct: 423 MERESVVNELKSIEKEIADLKEIIESEQKRIEVLEGEIDEIKKRYG---DKRRTKIKFKE 479 Query: 502 VSRADKATLQQAMIEKEPITVVISNRGWIRSLK----------SHSVDLSALHFKEGDSL 551 + +++T + +I E +++S G ++ + V+ S K D++ Sbjct: 480 I--GERST--EDLIPNEESVIMLSYGGLVKRVPIDEYRSQRRGGKGVNTS---MKISDTV 532 Query: 552 KIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI--VT 604 K +H + D I ++ G KAY +P + S G + + L N+ + V Sbjct: 533 KSIIHCFSHDTIYFFTSGGRVFKIKAYEIPKKSRTS---LGVSAGAFLKLQQNERVTEVM 589 Query: 605 AFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD-HVAV 663 D L++V+ G + G + + ++++ + D ++ V Sbjct: 590 KAPADRGEHLVLVTRNGFVKKTPADPVFDAKSSGLKIITLDGDDELVSASTIDTDTNMFV 649 Query: 664 VGENRKLLIFSIDQIPEMSRGK-GVRLQSYKDGGISD--VICFKICEGLTWIDSAGRSYN 720 + K +F+ ++ E R GVR G D V F + EG + + + + Sbjct: 650 LSSKGKGSVFNTSEVRETGRSSMGVRSMRL---GEEDYVVTAFVVKEGQDILSISEKGFG 706 Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750 + N + RG G LV + R+GK Sbjct: 707 KRTNLSEFPVHHRGSGGVLVYRDTERTGKI 736 >gi|269124284|ref|YP_003297654.1| DNA gyrase subunit A [Thermomonospora curvata DSM 43183] gi|268309242|gb|ACY95616.1| DNA gyrase, A subunit [Thermomonospora curvata DSM 43183] Length = 839 Score = 374 bits (960), Expect = e-101, Method: Compositional matrix adjust. Identities = 247/765 (32%), Positives = 400/765 (52%), Gaps = 39/765 (5%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 E ++ V ++ L+ YL YA+S I RA+P++RDG KPVHRR+++AM + G + K Sbjct: 13 ERIEPVDIQVELQRSYLDYAMSVIVARALPEVRDGLKPVHRRVLYAMYDGGYRPDRGYFK 72 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 AR+VG+V+G HPHGD ++YD+LVRLAQP+ RYPL+ G GNFG+ D AAA RYTE Sbjct: 73 CARVVGDVMGNYHPHGDSAIYDTLVRLAQPWAMRYPLVDGNGNFGSRGNDPAAAMRYTEC 132 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 R+ +A +L+ +D++ VDF Y+ +EP V P++FPNLL NG++GIAVGMAT+IP H Sbjct: 133 RLAPLAMEMLRDIDKETVDFSPNYDGRSTEPDVLPARFPNLLVNGSAGIAVGMATNIPPH 192 Query: 195 NVQEICEAALALIDNPEISIEKLLEYII----GPDFPTGGIIVESRESIVESYRLGRGGF 250 N++E+ E +DN +S E+LL+ +I GPDFPT +IV R+ I ++YR GRG Sbjct: 193 NLREVTEGVFWYLDNYHVSDEELLDALIERIKGPDFPTAALIV-GRKGIEDAYRTGRGSI 251 Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV- 309 +RA +EE+ +G C+VVTE+PYQV L KIAEL+ ++ + D+RDE++ Sbjct: 252 TMRAVVEIEEI-QGRTCLVVTELPYQVNPDNLALKIAELVKEGKLEGIADVRDETSGRTG 310 Query: 310 -RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368 R+V+ K ++ +++ +++ + ++ F NM L G VP+ + LD ++ W+ H+ Sbjct: 311 QRLVIVLKKDAI-AKVVLNNLYKHTQLQETFGANMLALVDG-VPRTLRLDQFIRYWVDHQ 368 Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTE 425 +V+ RR+ F ++ + R IL+ LL A I+E+IA+IR + + +++ + E Sbjct: 369 IDVIVRRTRFLLRKAEERAHILRALLRALDRIEEVIALIRGSESAQAAQEGLMALLQIDE 428 Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485 Q AIL+++LR L LE I E + L+AE + +L S ++Q + E+ + E Sbjct: 429 VQAQAILDMQLRKLAALERQAITDEYERLMAEIADFNEILASPERQRRIVREELEPIVER 488 Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHS 537 + RRT D + +I +E I V I+ G+ R K Sbjct: 489 YGDE-----RRTQIVPF---DGDVSYEDLIPEEDIVVTITRGGYAKRTRVDAYREQKRGG 540 Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQL 592 + K+ D ++ T +L + G KAY LP G S H + Sbjct: 541 KGVRGAQLKQDDIVEHFFVTTTHHWLLFFTNKGRVYRAKAYELPEGGRDSRGQHVANMLA 600 Query: 593 LIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS-SEEKMK 651 H +++ YD L++ + +G + + G + ++ +E + Sbjct: 601 FQPEEHIAEVLDLRDYDVAPYLVLATRQGKVKKTALKDFDSPRTGGIIAINLAEGDEVIA 660 Query: 652 LVVKVTGDHVAVVGENRKLLIFSID--QIPEMSRG-KGVRLQSYKDGGISDVICFKICEG 708 + D + +VG N + + F D Q+ M R GV + G + D+ + + Sbjct: 661 ARLVFPTDDLLLVGTNAQAIRFHADDEQLRPMGRATSGVIGMRFDTGHLLDMHVIRDGDE 720 Query: 709 LTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753 + + G R+ + G RGG G L K GK + + Sbjct: 721 DVLVATEGGYAKRTPVEQYPVQG-RGGKGVLTAKIVQARGKLVGA 764 >gi|293511563|ref|ZP_06670257.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus M809] gi|291465521|gb|EFF08053.1| DNA gyrase, A subunit [Staphylococcus aureus subsp. aureus M809] Length = 829 Score = 374 bits (959), Expect = e-101, Method: Compositional matrix adjust. Identities = 219/569 (38%), Positives = 344/569 (60%), Gaps = 30/569 (5%) Query: 71 AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130 ++KKSARIVG+V+GK HPHGD S+Y+++VR+AQ F RYPL+ GQGNFG++DGD AAA R Sbjct: 6 SYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMR 65 Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190 YTEARMT++ +L+ +++D +DF D Y+ + EP V P++FPNLLANG SGIAVGMAT+ Sbjct: 66 YTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATN 125 Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250 IP HN+ E+ L+L NP+ISI +L+E I GPDFPT G+I+ + I +Y GRG Sbjct: 126 IPPHNLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLIL-GKSGIRRAYETGRGSI 184 Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA--ED 308 ++R+R +EE G G IVVTEIP+QV K+R+IEKIAEL+ K+I + D+RDE++ Sbjct: 185 QMRSRAVIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTG 244 Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368 VR+V+ + + + +++ +++ + ++T F +NM L GR P+++ L L +L H+ Sbjct: 245 VRVVIDVR-KDANASVILNNLYKQTPLQTSFGVNMIALVNGR-PKLINLKEALVHYLEHQ 302 Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTE 425 + V+ RR+ + ++ R IL+GL IA +IDEII+ IR + K M S RF L+E Sbjct: 303 KTVVRRRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESETDKVAMESLQQRFKLSE 362 Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485 Q AIL++RLR L LE +I++E + LL +++++L + + E+ E+++ Sbjct: 363 KQAQAILDMRLRRLTGLERDKIEAEYNELLNYISELEAILADEEVLLQLVRDELTEIRDR 422 Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSLKSHSV------ 538 F RRT E+ L+ + +I +E I + +S+ +I+ L + Sbjct: 423 FGDD-----RRT---EIQLGGFEDLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRAQNRG 474 Query: 539 --DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLI 594 + ++ E D + + T D +L + G+ Y L + LS + G + I Sbjct: 475 GRGVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAI 534 Query: 595 DLNHNQDIVTAFV---YDSTCKLLVVSSK 620 +L +++ I T +S LV ++K Sbjct: 535 ELENDEIISTMIAVKDLESEDNFLVFATK 563 >gi|268610495|ref|ZP_06144222.1| DNA gyrase subunit A [Ruminococcus flavefaciens FD-1] Length = 874 Score = 374 bits (959), Expect = e-101, Method: Compositional matrix adjust. Identities = 223/612 (36%), Positives = 350/612 (57%), Gaps = 56/612 (9%) Query: 12 LVEENVKAVSLRFA--LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69 L +N K ++ ++ L YA+S I RA+PD+RDG KPVHRRI++ + E GL Sbjct: 2 LYNDNSKVINSEIVDEMQNSMLNYAMSVIVSRALPDVRDGLKPVHRRILYTLHENGLTPD 61 Query: 70 AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129 A++K A VG V+G+ HPHGD SVYD+LVRLAQ F RYPL+ G GNFG+IDGD AAY Sbjct: 62 KAYRKCADTVGAVLGRYHPHGDASVYDALVRLAQDFSMRYPLVDGHGNFGSIDGDGPAAY 121 Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189 RYTEA+M ++ +L ++++ VDF Y++ EPVV PS+FPNLL NG+ GIAVGMAT Sbjct: 122 RYTEAKMAKLTLDMLTDINKETVDFTSNYDDRLKEPVVLPSRFPNLLVNGSVGIAVGMAT 181 Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249 +IP HN+ E+ +A LI++P+ ++E+L+E+I GPDFPTGGII+ + I +Y GRG Sbjct: 182 NIPPHNLGEVIDALKLLIEDPDCTLEQLMEHIQGPDFPTGGIIM-GKAGIRAAYATGRGK 240 Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED- 308 +R+R EE+ +G CI++ EIP+ ++K RL++ I +L+ KRI L IRDES +D Sbjct: 241 IILRSRTHFEEI-KGRNCIIIDEIPFMLRKERLLKSINQLVKDKRIEGLYYIRDESDKDG 299 Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368 +R+V+ K ++ P++++ +F L+ ++ + M L G P+++ L +L+ +L + Sbjct: 300 MRVVIELKKDAM-PEIVLNKLFALTQLQDTVGIIMLALVNGE-PKILTLKQMLQHYLDFQ 357 Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRF---- 421 +V+ RR+ + ++ R IL+G ++A IDE+IAIIR+ + K M+ RF Sbjct: 358 VDVIQRRTRYDLRKALERAHILQGFVLAADYIDEVIAIIRSSATVQEAKERMIERFKDVD 417 Query: 422 ---------------------SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEK 460 L+E Q +AI+ +RL L LE +I EL LL + Sbjct: 418 MSALLDRAQYDLTGLHIEDQKGLSEEQAEAIVQMRLGQLTGLERQKITDELYGLLTKISD 477 Query: 461 IDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPI 520 + +L + + I ++ +++ FS RRT+ VS + +I +E Sbjct: 478 FEDILADVNRVYGIIIDDLNTIRKKFSDD-----RRTSIENVS---GEVDIEDLIPEEDC 529 Query: 521 TVVISNRGWIRSL------KSH--SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-- 570 V ++N G+I+ + H ++ + +E D + + D +L +S G Sbjct: 530 VVTLTNNGYIKRMPLTEYKTQHRGGRGITGMKQREEDFVDEMFICGSHDNVLFISNLGIM 589 Query: 571 ---KAYTLPAGN 579 K Y +P G+ Sbjct: 590 YKLKCYEVPDGS 601 >gi|20530729|gb|AAM27207.1|AF503577_1 topoisomerase IV ParC [Streptococcus pneumoniae] Length = 823 Score = 374 bits (959), Expect = e-101, Method: Compositional matrix adjust. Identities = 226/709 (31%), Positives = 400/709 (56%), Gaps = 33/709 (4%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 N++ +SL + ER+ Y+ I++RA+PD+RDG KPV RRI+++M++ G F +++KS Sbjct: 3 NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDGNTFDKSYRKS 62 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 A+ VG ++G HPHGD+S+YD++VR++Q + R L+ GN G++DGD AA RYTEAR Sbjct: 63 AKSVGNIMGNFHPHGDRSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 ++++A +LQ +D+ V F +++ + EP V P+ FPNLL NG++GI+ G AT IP HN Sbjct: 123 LSEIAGYLLQDIDKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 182 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 + E+ +A + +ID+P ++KL+E++ GPDFPTGGII + R+ I ++Y G+G VR++ Sbjct: 183 LAEVIDATVYMIDHPTAKVDKLMEFLPGPDFPTGGII-QGRDEIKKAYETGKGRVVVRSK 241 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315 +E++ G IV+TEIPY++ K+ L++KI ++ + ++ + ++RDES D + Sbjct: 242 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 301 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 + + +L++ +F +D++ + NM + P+ + + IL ++AHRREV+ R Sbjct: 302 LKKDANTELVLNYLFKYTDLQINYNFNMVAID-NFTPRQVGIVPILSSYIAHRREVILAR 360 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432 S F + ++R+ I++GL+ +DE+IA+IR N+ K + + TE Q +AI+ Sbjct: 361 SRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYEFTEEQAEAIV 420 Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492 L+L L + ++ E L + + +++ + +N + E+REVK+ F+ Sbjct: 421 TLQLYRLTNTDVVVLQEEEAELREKIAMLVAIIGDERTMYNLMKKELREVKKKFATP--- 477 Query: 493 GRRRTTFCEVSRA---DKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FK 546 R ++ + ++A D A+L I +E V ++ G+I+ S S L + Sbjct: 478 --RLSSLEDTAKAIEIDTASL----IAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKR 531 Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIV 603 + D L A TT +L+ +T G P L R GE + Q + + N++I+ Sbjct: 532 DDDRLIFVQAAKTTQHLLMFTTLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEIL 591 Query: 604 TAFV---YDSTCKLLVVSSKGNAFIVEESEIIA-NTRKGKT--FLKVSSE-EKMKLVVKV 656 A V +D + G VE E T K K+ + K+ E +++ V + Sbjct: 592 YAEVLEQFDDATTYFAATRLGQIKRVERKEFTPWRTYKSKSVKYAKLKDETDQIVAVAPI 651 Query: 657 TGDHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDGGI--SDVIC 702 D V ++ +N L F+I+++P + ++ GV+ + K+ + S IC Sbjct: 652 KLDDVLLISQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSAFIC 700 >gi|329119708|ref|ZP_08248388.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Neisseria bacilliformis ATCC BAA-1200] gi|327464157|gb|EGF10462.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Neisseria bacilliformis ATCC BAA-1200] Length = 929 Score = 374 bits (959), Expect = e-101, Method: Compositional matrix adjust. Identities = 225/628 (35%), Positives = 352/628 (56%), Gaps = 65/628 (10%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 VSL + + YL YA+S I RA+PD+RDG KPVHRR+++AM E+ ++ AA+KKSARIV Sbjct: 19 VSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIV 78 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGD +VYD++VR+AQ F RY L+ GQGNFG++DGD AAA RYTE RM ++ Sbjct: 79 GDVIGKYHPHGDSAVYDTIVRMAQDFSMRYVLVDGQGNFGSVDGDGAAAMRYTEIRMAKI 138 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A +L ++E+ V+F Y+ + EP+V P++FP LL NG+SGIAVGMAT+IP HN+ + Sbjct: 139 AHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPALLVNGSSGIAVGMATNIPPHNLTDT 198 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 A L L+D PE I++L+ + PDFPTG I + E Y+ GRG +R + +E Sbjct: 199 VNACLHLLDAPETDIDELINILQAPDFPTGATIY-GLSGVREGYKTGRGRVVMRGKTHIE 257 Query: 260 EVGRGS--WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317 +G+ I++ EIPYQV K++L+EKI +L+ K + + D+RDES + V+ Sbjct: 258 PIGKNGEREAIIIDEIPYQVNKAKLVEKIGDLVRDKTLEGIADLRDESDKSGMRVVIELK 317 Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377 R+ + ++++ ++ L+ ++ F +NM L G+ P+++ L IL E+L HRREV+ RR+ Sbjct: 318 RNENAEVVLNQLYKLTQLQDSFGINMVALVDGQ-PRLLNLKQILSEFLRHRREVVTRRTL 376 Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDKP--KPVMVSR-------------- 420 FR++ I +G +A NIDE+I +I+ + D P K +++R Sbjct: 377 FRLKKARHEGHIAEGKAVALSNIDEMIRLIKESADAPEAKEKLLARAWRSSLVEDMLGRT 436 Query: 421 ----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458 + L+E Q DAIL + LR+L L++ +I + N++A+ Sbjct: 437 DLDLRMARPEGLPANLGLQGEGYYLSEIQADAILRMSLRNLTGLDQEEIVGDYKNIMAKI 496 Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518 +L ++ I E+ E+K F GR+ E++ + +I + Sbjct: 497 IDFLDILAKPERITQIIREELEEIKTGFGD----GRK----SEINPFGGDIADEDLIPQR 548 Query: 519 PITVVISNRGWIRSLKSHSVDL--------SALHFKEGDSLKIALHAHTTDRILLLSTDG 570 + V +++ G+I++ + A K+ D ++ A+T D ++ + G Sbjct: 549 EMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDYLMCFTNLG 608 Query: 571 KA-----YTLPAGNLLS-GRGHGEAIQL 592 K Y LP G S GR IQL Sbjct: 609 KCHWIKVYKLPEGGRNSRGRPINNVIQL 636 >gi|293400717|ref|ZP_06644862.1| DNA topoisomerase IV, A subunit [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291305743|gb|EFE46987.1| DNA topoisomerase IV, A subunit [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 830 Score = 374 bits (959), Expect = e-101, Method: Compositional matrix adjust. Identities = 233/703 (33%), Positives = 393/703 (55%), Gaps = 25/703 (3%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 NV L + +R+ Y+ I+ERA+PD RDG KPV RRI++AM G + A++KS Sbjct: 14 NVLTSPLEEIMGDRFGRYSKYIIQERALPDARDGLKPVQRRILYAMFVDGNTWDKAYRKS 73 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 A+ VG VIG HPHGD SVYD++VR++Q + R P I QGN G+ID D AAA RYTEAR Sbjct: 74 AKTVGLVIGNYHPHGDSSVYDAMVRMSQDWKIRTPQIDMQGNNGSIDDDPAAAMRYTEAR 133 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 + +++E +LQ +D+D V + +++ EP V P+++PNLL NG +GIA G AT+IP HN Sbjct: 134 LGKISEYLLQDIDKDTVSWAPNFDDTAMEPTVLPARYPNLLVNGITGIAAGYATNIPPHN 193 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 + E +A++ I +P+ +++ L+E++ GPDFPTGG IV+ + I +++ G+G VR++ Sbjct: 194 LGECIDASIYRIQHPDCTLDDLMEFVQGPDFPTGG-IVQGLDGIKDAFTSGKGRIMVRSK 252 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315 +E+ + I+V EIPY+V KS +++KI ++ + K+I + D+RDES + V+ Sbjct: 253 VSIEQT-KTVQQIIVHEIPYEVVKSNMVKKIDDIRLNKKIDGILDVRDESDRNGLRVVID 311 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSM-GRVPQVMPLDGILKEWLAHRREVLFR 374 + D L++ ++ +D++ + N NV+++ + P M L +L ++AHRREV+ R Sbjct: 312 LKKDADAQLILNYLYKNTDLQVSY--NYNVIAIKDKRPVQMGLAAMLDAFIAHRREVILR 369 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDKP--KPVMVSRFSLTENQVDAI 431 RS+F + ++R IL+GL+ A +DEIIA+IR ++DK K ++ F +E Q +AI Sbjct: 370 RSAFDLDKKEKRCHILEGLIKAVSILDEIIALIRSSKDKADSKVKIIEAFGFSEPQAEAI 429 Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491 + +RL L + Q++ E NL AE +++ +L K+ + E++EVK+ F Sbjct: 430 VTMRLYRLSNTDITQLREEFANLQAEIKELHEILEDPKKLKKVMVAELKEVKKAFPTP-- 487 Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSVDLSALH-FKEG 548 R T E + + AMI +E + IS G+++ S++S+ A+ KEG Sbjct: 488 ----RLTKIEHEIEEIVIDKVAMIPQEQVMFTISRDGYVKRVSMRSYGAANDAMTGIKEG 543 Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDIVTAF 606 D L +T D IL ++ G +P + + G I I + ++ I AF Sbjct: 544 DHLIGYGEVNTLDNILFFTSKGTYGYVPVYEVDDAKWKEIGSHINSKIKITSDEKITDAF 603 Query: 607 V---YDSTCKLLVVSSKG--NAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHV 661 + + + ++ ++ G + E E+ N + + +E ++ V D + Sbjct: 604 IVKDFKTNSYMISITRHGLVKKTAICEYEVSRNNKTMSNMKLLEDDEVVQTYVAYEEDEI 663 Query: 662 AVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICF 703 + + + + I IP S R KGV+ + + I+ + + Sbjct: 664 LIASKKGYITRYPISLIPATSPRSKGVKAMNLVEDEIASALIY 706 >gi|320109047|ref|YP_004184637.1| DNA gyrase subunit A [Terriglobus saanensis SP1PR4] gi|319927568|gb|ADV84643.1| DNA gyrase, A subunit [Terriglobus saanensis SP1PR4] Length = 960 Score = 374 bits (959), Expect = e-101, Method: Compositional matrix adjust. Identities = 205/556 (36%), Positives = 314/556 (56%), Gaps = 53/556 (9%) Query: 19 AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78 ++++ + YL Y++S I RA+PD+RDG KPVHRRI++AM EMGL + K A++ Sbjct: 32 SINIEDEMRRSYLDYSMSVIIGRALPDVRDGLKPVHRRILYAMQEMGLQANKKYTKCAKV 91 Query: 79 VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138 VG +G HPHGD ++YD++VRLAQPF RYPL+ GQGNFG++DGD AA RYTEAR+ + Sbjct: 92 VGHTMGNYHPHGDSAIYDAMVRLAQPFSMRYPLVDGQGNFGSVDGDPPAAMRYTEARLMK 151 Query: 139 VAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQE 198 +A ++ +D D VDF Y+E EP V P+++PNL+ NG+SGIAVGMAT+IP HN+ E Sbjct: 152 IAGEMIADIDMDTVDFTPNYDESSLEPTVLPARYPNLIVNGSSGIAVGMATNIPPHNLTE 211 Query: 199 ICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCV 258 + A + L++NP + ++LE++ GPDFPT G I + I +YR GRG F +RA+ Sbjct: 212 VINACITLVNNPSAGLAEVLEHVQGPDFPTAGFIY-GKSGIANAYRTGRGKFLMRAKCSR 270 Query: 259 EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318 E + G I+V+EIPYQV K+ LI++IAEL+ K I + D+RDES D ++ R Sbjct: 271 ENISGGREAIIVSEIPYQVNKNTLIKRIAELVTEKIIDDISDVRDESDRDGMRIVIELKR 330 Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378 + P++++ +F + M+ F + + GR P +PL ++ ++ HR +V+ RR++F Sbjct: 331 TAQPEIVLNQLFKHTSMQESFSMIFLAVHNGR-PVELPLPDAIRAFIDHRVDVVRRRTAF 389 Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---------------------------- 410 + R IL G IA ++D +I IRN Sbjct: 390 LLNKARDREHILLGYQIALDHLDAVIRTIRNSSSRADARENLFKYFSGKTISLRGTELAG 449 Query: 411 ---DKPK--------PV----MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLL 455 D K P+ V L+ Q+D IL L+L L +L ++ EL + Sbjct: 450 VTLDASKYGISADLLPLGPGGTVGTLILSYRQIDTILELQLYRLTQLSMDEVFKELGQVR 509 Query: 456 AEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMI 515 + +S+L S K+ I E+ EV+E + RRT + + + TL+ +I Sbjct: 510 ENIAEYESILASDKKLRRVIIKELEEVREKYGDV-----RRTQI--IDESSELTLED-LI 561 Query: 516 EKEPITVVISNRGWIR 531 E + V +S+ G+++ Sbjct: 562 ADEQVAVTVSHSGYLK 577 >gi|295103720|emb|CBL01264.1| DNA gyrase subunit A [Faecalibacterium prausnitzii SL3/3] Length = 860 Score = 374 bits (959), Expect = e-101, Method: Compositional matrix adjust. Identities = 249/741 (33%), Positives = 389/741 (52%), Gaps = 48/741 (6%) Query: 26 LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85 +E +L Y++S I RA+PD+RDG KPVHRRI++ M E G D A++KSA VG V+G Sbjct: 24 IETAFLDYSMSVIVSRALPDVRDGLKPVHRRILYTMHERGNDPSHAYRKSADTVGAVLGS 83 Query: 86 LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145 HPHGD SVYD++VRLAQ F RYPL+ GQGNFG++DGD AAYRYTEARM+++A +L Sbjct: 84 YHPHGDASVYDAMVRLAQDFSLRYPLVDGQGNFGSVDGDPPAAYRYTEARMSRMAVEMLT 143 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 +++D +D+ ++E EP V P +FPNLL NG+ GIAVGMAT+IP HN+ E+ + +A Sbjct: 144 DIEKDTIDWDPNFDETKKEPSVLPCRFPNLLVNGSQGIAVGMATNIPPHNLSEVIDGCIA 203 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265 ID+PEI + L+E+I GPDFPT GII+ R I +Y GRG +R R +EE G Sbjct: 204 YIDDPEIDLPGLMEHIKGPDFPTAGIIM-GRSGIRAAYATGRGKITLRGRATIEETKNGR 262 Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325 I++TEIPY V K+RLIE +A+L+ KRI + + DE+ ++ + + ++ Sbjct: 263 TQIIITEIPYMVNKARLIEHMADLVKEKRIEGITGLNDETNRKGMRIVVDIRKDANAQVI 322 Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385 + ++ + ++ + M + +VP+V+ L +L++++ + EV+ RR+ + ++ Sbjct: 323 LNQLYQYTQLQDTVGVIMLAIDH-KVPKVLTLKQMLQKYVEFQDEVVRRRTQYDLKKAKE 381 Query: 386 RVEILKGLLIAYLNIDEIIAIIR----NEDKPKPVMVSRFSLTENQVDAILNLRLRSLRK 441 R IL+GL A +DE+IA IR + K ++ +F + Q DAI+ L+L L Sbjct: 382 RAHILEGLKKATDIVDELIATIRACKGGMAEAKAAIMEQFGFDDPQADAIVKLQLGRLAG 441 Query: 442 LEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCE 501 LE +I+ EL +L A+ E +++L + + E+ ++K+ F RRT E Sbjct: 442 LEILKIEEELASLHAKIEDWEAILADDARVLAIVKDELLDMKKRFGDE-----RRT---E 493 Query: 502 VSRADKATLQQAMIEKEPITVVISNRGWI-RSLKSH-------SVDLSALHFKEGDSLKI 553 + + +I +E ++ G+I R LK+ +S + KE D ++ Sbjct: 494 IQSVTGEVDIEDLIAEEQCVYTLTEAGYIKRQLKATYQAQRRGGRGISGMTRKEEDIVQE 553 Query: 554 ALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608 T D +L ++ G K YT+ G+ S G I L+ L + + Sbjct: 554 MFVGSTHDYVLFVTDRGRLFRIKGYTIAEGSRTS---KGMNIVNLLQLAEGEKVTNMICQ 610 Query: 609 DSTCKLLVVSSKGNAFIVEESEII--------ANTRKGKTFLKVSSEEKMKLVVKVTGDH 660 + S G +V + +I AN RK +E ++T H Sbjct: 611 SKDAE----QSGGYVTMVTKQGLIKRTPLEQYANIRKSGLIGIALNEGDALAWTRLTSGH 666 Query: 661 --VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKIC-EGLTWIDSAG 716 + V N + + F+ + M R G GVR +G +V+ IC EG T + Sbjct: 667 DMLIVATRNGQAIRFNEEDARPMGRNGHGVRAIRLAEG--DEVVGVCICREGGTVLTVTE 724 Query: 717 RSYNRSENDLLGWLGKRGGVG 737 R + + RGG G Sbjct: 725 NGKGRRSDIDTYRITARGGKG 745 >gi|160944259|ref|ZP_02091488.1| hypothetical protein FAEPRAM212_01768 [Faecalibacterium prausnitzii M21/2] gi|158444441|gb|EDP21445.1| hypothetical protein FAEPRAM212_01768 [Faecalibacterium prausnitzii M21/2] Length = 860 Score = 374 bits (959), Expect = e-101, Method: Compositional matrix adjust. Identities = 249/741 (33%), Positives = 389/741 (52%), Gaps = 48/741 (6%) Query: 26 LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85 +E +L Y++S I RA+PD+RDG KPVHRRI++ M E G D A++KSA VG V+G Sbjct: 24 IETAFLDYSMSVIVSRALPDVRDGLKPVHRRILYTMHERGNDPSHAYRKSADTVGAVLGS 83 Query: 86 LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145 HPHGD SVYD++VRLAQ F RYPL+ GQGNFG++DGD AAYRYTEARM+++A +L Sbjct: 84 YHPHGDASVYDAMVRLAQDFSLRYPLVDGQGNFGSVDGDPPAAYRYTEARMSRMAVEMLT 143 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 +++D +D+ ++E EP V P +FPNLL NG+ GIAVGMAT+IP HN+ E+ + +A Sbjct: 144 DIEKDTIDWDPNFDETKKEPSVLPCRFPNLLVNGSQGIAVGMATNIPPHNLSEVIDGCIA 203 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265 ID+P+I + L+E+I GPDFPT GII+ R I +Y GRG +R R +EE G Sbjct: 204 YIDDPDIDLPGLMEHIKGPDFPTAGIIM-GRSGIRAAYATGRGKITLRGRATIEETKNGR 262 Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325 I++TEIPY V K+RLIE +A+L+ KRI + + DE+ ++ + + ++ Sbjct: 263 TQIIITEIPYMVNKARLIEHMADLVKEKRIEGITGLNDETNRKGMRIVVDIRKDANAQVI 322 Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385 + ++ + ++ + M + +VP+V+ L +L++++ + EV+ RR+ + ++ Sbjct: 323 LNQLYQYTQLQDTVGVIMLAIDH-KVPKVLTLKQMLQKYVEFQDEVVRRRTQYDLKKAKE 381 Query: 386 RVEILKGLLIAYLNIDEIIAIIR----NEDKPKPVMVSRFSLTENQVDAILNLRLRSLRK 441 R IL+GL A +DE+IA IR + K ++ +F + Q DAI+ L+L L Sbjct: 382 RAHILEGLKKATDIVDELIATIRACKGGMAEAKAAIMEQFGFDDPQADAIVKLQLGRLAG 441 Query: 442 LEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCE 501 LE +I+ EL +L A+ E +++L + + E+ E+K+ F RRT E Sbjct: 442 LEILKIEEELASLHAKIEDWEAILADDARVLAIVKDELLEMKKRFGDE-----RRT---E 493 Query: 502 VSRADKATLQQAMIEKEPITVVISNRGWI-RSLKSH-------SVDLSALHFKEGDSLKI 553 + + +I +E ++ G+I R LK+ +S + KE D ++ Sbjct: 494 IQSVTGEVDIEDLIAEEQCVYTLTEAGYIKRQLKATYQAQRRGGRGISGMTRKEEDIVQE 553 Query: 554 ALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY 608 T D +L ++ G K YT+ G+ S G I L+ L + + Sbjct: 554 MFVGSTHDYVLFVTDRGRLFRIKGYTIAEGSRTS---KGMNIVNLLQLAEGEKVTNMICQ 610 Query: 609 DSTCKLLVVSSKGNAFIVEESEII--------ANTRKGKTFLKVSSEEKMKLVVKVTGDH 660 + S G +V + +I AN RK +E ++T H Sbjct: 611 SKDAE----QSGGYVTMVTKQGLIKRTPLEQYANIRKSGLIGIALNEGDALAWTRLTSGH 666 Query: 661 --VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKIC-EGLTWIDSAG 716 + V N + + F+ + M R G GVR +G +V+ IC EG T + Sbjct: 667 DMLIVATRNGQAIRFNEEDARPMGRNGHGVRAIRLAEG--DEVVGVCICREGGTVLTVTE 724 Query: 717 RSYNRSENDLLGWLGKRGGVG 737 R + + RGG G Sbjct: 725 NGKGRRSDIDTYRITARGGKG 745 >gi|315608754|ref|ZP_07883732.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Prevotella buccae ATCC 33574] gi|315249604|gb|EFU29615.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Prevotella buccae ATCC 33574] Length = 881 Score = 374 bits (959), Expect = e-101, Method: Compositional matrix adjust. Identities = 218/611 (35%), Positives = 347/611 (56%), Gaps = 27/611 (4%) Query: 11 TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70 T+ + + +++ ++ Y+ Y++S I RA+PD+RDGFKPVHRRI++ M +G Sbjct: 6 TIDHDRILKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMLGIGNTSDK 65 Query: 71 AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130 +KK AR+VGEV+GK HPHGD SVY +LVR+ Q + RY L+ GQGNFG++DGDS AA R Sbjct: 66 PYKKCARVVGEVLGKYHPHGDSSVYGALVRMGQDWNMRYTLVDGQGNFGSVDGDSPAAMR 125 Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190 YTE R++++ E ++ +++D VD + +++ +EP V P+K PNLL NG +GIAVGMAT+ Sbjct: 126 YTECRLSKMGEHVMDDLEKDTVDMTNNFDDTLTEPSVMPTKIPNLLVNGGNGIAVGMATN 185 Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250 +P+HN+ E+ + A IDNPEI +E L+ YI PDFPTG I + + ++Y GRG Sbjct: 186 MPTHNLGEVIDGCCAYIDNPEIDLEGLMHYIKAPDFPTGAYIY-GIQGVKDAYETGRGRV 244 Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDV 309 +RA+ +E IV+TEIPY V K++LIE IAEL+ +I + + DES + + Sbjct: 245 VMRAKAEIES-DESHDKIVITEIPYGVNKAQLIEYIAELVKDGKIDGISNANDESGRQGM 303 Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369 RIV+ K R + ++++ +F ++ +++ F +N L GR P+++ L +K ++ HR Sbjct: 304 RIVIDVK-RDANANVILNKLFKMTALQSAFSVNNIALVNGR-PRLLSLKECVKYFVEHRH 361 Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTEN 426 +V RR+ + ++ R IL+GL+IA NIDE++ IIR P + RF+L E Sbjct: 362 DVTIRRTKYDLRKAQERAHILEGLIIACDNIDEVVHIIRASKTPADAQRNLEERFNLDEL 421 Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486 Q AI+++RL L L Q+ +E + L + + +LN + + E++EVKE + Sbjct: 422 QSKAIVDMRLSQLTGLRMDQLHAEYEELERMIDYYNRILNDPELCKQVMKDELQEVKEKY 481 Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSV 538 RRT E+ + + + +P+ + +S+ G+I R V Sbjct: 482 GDP-----RRT---EIKYSSEEFNPEDFYPNDPVVITVSHMGYIKRTPLSEFREQARGGV 533 Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDL 596 +E D + A +L + G+ Y L + G G AIQ L+++ Sbjct: 534 GSKGARHREQDFTEYIYPATMHQTMLFFTKKGRCYWLKCYEIPEGDRNSKGRAIQNLLNI 593 Query: 597 NHNQDIVTAFV 607 D V AF+ Sbjct: 594 -EGDDQVNAFL 603 >gi|300781944|ref|YP_003762235.1| DNA gyrase subunit A [Amycolatopsis mediterranei U32] gi|299791458|gb|ADJ41833.1| DNA gyrase subunit A [Amycolatopsis mediterranei U32] Length = 845 Score = 374 bits (959), Expect = e-101, Method: Compositional matrix adjust. Identities = 217/587 (36%), Positives = 338/587 (57%), Gaps = 33/587 (5%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 + ++ V ++ ++ Y+ YA+S I RA+PD+RDG KPVHRR++++M + G + K Sbjct: 12 DRIEPVDIQQEMQRSYIDYAMSVIVSRALPDVRDGLKPVHRRVLYSMFDSGFRPDRGYNK 71 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 +R+VG+V+G HPHGD ++YD+LVRLAQP+ RYPLI GQGNFG+ D AAA RYTE+ Sbjct: 72 CSRVVGDVMGNYHPHGDSAIYDALVRLAQPWSMRYPLIDGQGNFGSPGNDPAAAMRYTES 131 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 R+ +A +L ++ED VDF D Y+ EP V PS+FPNLL NG SGIAVGMAT+IP H Sbjct: 132 RLAPLAMQMLADIEEDTVDFSDNYDGRTQEPDVLPSRFPNLLVNGGSGIAVGMATNIPPH 191 Query: 195 NVQEICEAALALIDNPEISIEKLLEYII----GPDFPTGGIIVESRESIVESYRLGRGGF 250 N++E+ E + ++NPE + ++LL ++ GPDFPT +I+ + I ++YR GRG Sbjct: 192 NLREVSEGVVWALENPEATDDELLAALLVRIKGPDFPTKAMILGT-SGIEDAYRTGRGSV 250 Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA--ED 308 R+RA VEE +G +VV+E+PYQV L+E IA L+ ++ + DI DES Sbjct: 251 RMRAVVEVEEDAKGRTILVVSELPYQVNPDNLVENIANLVRDGKLTGISDIADESNSRSG 310 Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368 +RIV+ K R +++ ++F + ++ F +NM L G VP+ + LD I++ ++ H+ Sbjct: 311 MRIVVTIK-RDAVAKVVLNNLFKHTQLQQNFGVNMLALVDG-VPRTLRLDQIIRHYVKHQ 368 Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTE 425 +V+ RR+ +R++ + R IL+GL+ A +DE+IA+IR + D+ +P +++ + E Sbjct: 369 MDVIVRRTRYRLRKKEERAHILRGLVKALDALDEVIALIRRSPSADEARPALMTLLDIDE 428 Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485 Q AIL+++LR L LE +I EL + E + +L ++Q I E+ + + Sbjct: 429 IQAVAILDMQLRRLAALERQRIIDELAEIEIEIADLKDILEKPERQRAIIRDELMAIVDK 488 Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHS 537 + RRT S + +I E + V I+ G+ RS K Sbjct: 489 YGDD-----RRTKIIGFS---GDVTDEELIAVEDVVVTITRTGYAKRTKTDLYRSQKRGG 540 Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGN 579 + K+ D ++ T D IL + G KAY LP N Sbjct: 541 KGVQGATLKQDDIVQHFFVCSTHDWILFFTNKGRVYRTKAYELPEAN 587 >gi|271961617|ref|YP_003335813.1| DNA topoisomerase [Streptosporangium roseum DSM 43021] gi|270504792|gb|ACZ83070.1| DNA topoisomerase (ATP-hydrolyzing) [Streptosporangium roseum DSM 43021] Length = 836 Score = 373 bits (958), Expect = e-101, Method: Compositional matrix adjust. Identities = 221/597 (37%), Positives = 341/597 (57%), Gaps = 29/597 (4%) Query: 6 ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65 +++ NT + E ++ V ++ ++ Y+ YA+S I RA+PD+RDG KPVHRR+++AM + G Sbjct: 1 MTDVNTPLVERIEPVDIQSEMQRSYMDYAMSVIVSRALPDVRDGLKPVHRRVLYAMYDGG 60 Query: 66 LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125 + K +R+VG+V+G HPHGD S+Y ++VRLAQP+ RY LI GQGNFG+ D Sbjct: 61 YRPDRGYFKCSRVVGDVMGSYHPHGDSSIYGTVVRLAQPWALRYTLIDGQGNFGSPGNDM 120 Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185 AA RYTE ++ +A +++ +D+D VDF+ Y+ EP+V PS+FPNLL NG++GIAV Sbjct: 121 PAAMRYTECKLAPIAMEMIRDIDKDTVDFQPNYDGRSQEPLVLPSRFPNLLVNGSAGIAV 180 Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYII----GPDFPTGGIIVESRESIVE 241 GMAT+IP HN++E+ + + NPE S E+LLE +I GPDFPTG +IV R I + Sbjct: 181 GMATNIPPHNLREVADGVRWALQNPEASDEELLEALIARVKGPDFPTGALIV-GRRGIDD 239 Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301 +YR GRG +RA VEE +G C+VVTE+PYQV L IAE + RI + D+ Sbjct: 240 AYRTGRGSITMRAIVEVEEDAKGRQCLVVTELPYQVNPDNLALSIAESVKEGRITGIADV 299 Query: 302 RDESAEDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359 RDES+ V R+V+ K R +++ +++ + ++T F NM L G VP+ + LD Sbjct: 300 RDESSSRVGQRLVIVLK-RDAVAKVVLNNLYKHTQLQTTFGANMLALVDG-VPRTLRLDQ 357 Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV--- 416 ++ ++AH+ EV+ RR+ + ++ + R IL+ LL A +DE+IA+IR Sbjct: 358 FVRHYVAHQIEVVVRRTRYLLRKAEERAHILRALLKALERMDEVIALIRRSPSASAAQGG 417 Query: 417 MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476 +++ + E Q AIL+++LR L LE QI E D L+A ++L S ++Q + Sbjct: 418 LMALLEIDEIQAQAILDMQLRKLAALERQQITDEYDTLMAHITDYQAILASPERQRTIV- 476 Query: 477 CEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW------- 529 E+ EI SK G R T D + + ++ +E + V I+ G+ Sbjct: 477 --FDELSEIVSK---YGDERKTEIIAYEGDMSI--EDLLAEEDMVVTITRGGYAKRTNTD 529 Query: 530 -IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR 584 R+ K + ++ D + T +L + G+ Y + A L SGR Sbjct: 530 LYRAQKRGGKGVRGAQLRQDDIVDHFFVTTTHHWLLFFTNKGRVYRVKAYELPDSGR 586 >gi|325144681|gb|EGC66979.1| DNA gyrase, A subunit [Neisseria meningitidis M01-240013] Length = 916 Score = 373 bits (958), Expect = e-101, Method: Compositional matrix adjust. Identities = 227/628 (36%), Positives = 352/628 (56%), Gaps = 65/628 (10%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 VSL + + YL YA+S I RA+PD+RDG KPVHRR+++AM E+ ++ AA+KKSARIV Sbjct: 19 VSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIV 78 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGD +VYD++VR+AQ F RY LI GQGNFG++DG +AAA RYTE RM ++ Sbjct: 79 GDVIGKYHPHGDTAVYDTIVRMAQNFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMAKI 138 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 + +L ++E+ V+F Y+ + EP+V P++FP LL NG+SGIAVGMAT+IP HN+ + Sbjct: 139 SHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGSSGIAVGMATNIPPHNLSDT 198 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 A L L+D P+ I++L++ I PDFPTG I + E Y+ GRG +R + +E Sbjct: 199 VNACLRLLDAPDTEIDELIDIIQAPDFPTGATIY-GLSGVREGYKTGRGRVVMRGKTHIE 257 Query: 260 EVGRGS--WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317 +GR IV+ EIPYQV K++L+EKI +L+ K + + ++RDES + V+ Sbjct: 258 PIGRNGEREAIVIDEIPYQVNKAKLVEKIGDLVREKTLEGISELRDESDKSGMRVVIELK 317 Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377 R+ + ++++ ++ L+ ++ F +NM VL G+ P+++ L IL E+L HRREV+ RR+ Sbjct: 318 RNENAEVVLNQLYKLTPLQDSFGINMVVLVDGQ-PRLLNLKQILSEFLRHRREVVTRRTL 376 Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSR-------------- 420 FR++ I +G +A NIDEII +I+ N + K +++R Sbjct: 377 FRLKKARHEGHIAEGKAVALSNIDEIIKLIKESPNAAEAKDKLLARPWRSSLVEEMLTRS 436 Query: 421 ----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458 + L+E Q DAIL + LR+L L++ +I NL+ + Sbjct: 437 GLDLEMMRPEGLAANIGLKEQGYYLSEIQADAILRMSLRNLTGLDQEEIVESYKNLMGKI 496 Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518 +L+ ++ I E+ E+K T+ G R + D A + +I + Sbjct: 497 IDFVDILSKPERITQIIRDELEEIK------TNYGDERRSEINPFGGDIA--DEDLIPQR 548 Query: 519 PITVVISNRGWIRSLKSHSVDL--------SALHFKEGDSLKIALHAHTTDRILLLSTDG 570 + V +++ G+I++ + A K+ D ++ A+T D ++ + G Sbjct: 549 EMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDYLMCFTNLG 608 Query: 571 KA-----YTLPAGNLLS-GRGHGEAIQL 592 K Y LP G S GR IQL Sbjct: 609 KCHWIKVYKLPEGGRNSRGRPINNVIQL 636 >gi|298253026|ref|ZP_06976818.1| type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit [Gardnerella vaginalis 5-1] gi|297532421|gb|EFH71307.1| type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit [Gardnerella vaginalis 5-1] Length = 876 Score = 373 bits (958), Expect = e-101, Method: Compositional matrix adjust. Identities = 230/622 (36%), Positives = 351/622 (56%), Gaps = 44/622 (7%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 VK + L+ + E YLAYALS I ERA+PD+RDG KPVHRR+I+AM + G + K + Sbjct: 43 VKNMDLQQEMRESYLAYALSVIVERALPDVRDGLKPVHRRVIYAMYDGGYRPDRGYNKCS 102 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+V+GK HPHGD ++YD+LVR+AQ + RY L+ GQGNFG+ D AAA RYTE RM Sbjct: 103 RVVGDVMGKYHPHGDSAIYDTLVRMAQSWSMRYMLVDGQGNFGSPGDDPAAAMRYTECRM 162 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 +A +++ +D+D VDF Y+ + EP V P++FPNLL NG++GIAVGMAT+IP HN+ Sbjct: 163 APLAMEMVRDIDKDTVDFLPNYDGKTQEPTVLPARFPNLLVNGSAGIAVGMATNIPPHNM 222 Query: 197 QEICEAALALIDNPEISIEKLLEYII----GPDFPTGGIIVESRESIVESYRLGRGGFRV 252 E+ + +D+P+ S E+LLE +I GPDFPTG I+ + I ++YR GRG + Sbjct: 223 CEVADGVHWALDHPDASKEELLEALIQRIKGPDFPTGATIL-GHKGIEQAYRTGRGLITM 281 Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV--R 310 RA EE+ +G C+VVTE+PYQV RL I E + +I + D+RDE++ R Sbjct: 282 RAVVNTEEI-KGRMCLVVTELPYQVNPDRLAASIREAVRDGKIQGIADMRDETSGRTGQR 340 Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370 +VL K R P +++ +++ S ++ F NM L G VP+ + LD ++ W+ H+ E Sbjct: 341 LVLVLK-RDAVPKVVLNNLYKHSQLQQTFGANMLALVDG-VPRTLSLDAFIRHWVTHQLE 398 Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQ 427 V+ RR+ + + + R IL+G L A IDE++A+IR+ + + +++ + E Q Sbjct: 399 VIDRRTRYLKREAEERDHILQGYLKALDMIDEVVALIRSSKDVETARTGLMNLLDVDEVQ 458 Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487 DAIL ++LR L LE +I E ++L+ + + +L S ++Q + E+ EI + Sbjct: 459 ADAILAMQLRRLAALERQKILDEHEDLMIKIADYNDILASPERQRKIVGDEL---DEIVA 515 Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------D 539 K D RRT S + +I +E + V ++ G+I+ K+ Sbjct: 516 KYGD--DRRTKILPFSGEMNV---EDLIAEENVVVTVTRAGYIKRTKADEYRAQHRGGKG 570 Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGH-------- 586 + +E D + T + +L + G KAY LP G+ S H Sbjct: 571 IKGAKLREDDVVDHFFLTSTHNWLLFFTNRGRVYRLKAYELPEGSRDSKGQHVANLLQFT 630 Query: 587 -GEAIQLLIDLNHNQDIVTAFV 607 GE IQ ++ + N D+ V Sbjct: 631 PGETIQAVLSIP-NYDVAKYLV 651 >gi|238020191|ref|ZP_04600617.1| hypothetical protein GCWU000324_00066 [Kingella oralis ATCC 51147] gi|237868585|gb|EEP69589.1| hypothetical protein GCWU000324_00066 [Kingella oralis ATCC 51147] Length = 915 Score = 373 bits (958), Expect = e-101, Method: Compositional matrix adjust. Identities = 228/650 (35%), Positives = 360/650 (55%), Gaps = 67/650 (10%) Query: 7 SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66 SN + +E + AVSL +++ YL YA+S I RA+PD+RDG KPVHRR++ AM E+ Sbjct: 4 SNDHQFAKETI-AVSLEDEMKKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHELKN 62 Query: 67 DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126 ++ +A+KKSAR+VG+VIGK HPHGD +VY ++VR+AQPF RY L+ GQGNFG++DGD+A Sbjct: 63 NWNSAYKKSARVVGDVIGKYHPHGDSAVYQTIVRMAQPFSLRYMLVDGQGNFGSVDGDAA 122 Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186 AA RYTE RM ++A +L ++E+ V+F D Y+ + EP+V P++FP LL NG+ GIAVG Sbjct: 123 AAMRYTEIRMAKIAHEMLADIEEETVNFGDNYDGSEQEPLVLPTRFPALLVNGSEGIAVG 182 Query: 187 MATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLG 246 MAT+IP HN+ + A L L+ PE I +L++ I PDFPTG I + Y+ G Sbjct: 183 MATNIPPHNLSDTISACLHLLHQPEADINELIDIIKAPDFPTGATIY-GLTGVRAGYQTG 241 Query: 247 RGGFRVRARWCVEEVGRGS--WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304 RG +RA+ +E +G+ I+V EIPYQV K++L+EKI EL+ K I + ++RDE Sbjct: 242 RGRVVIRAKTHLEPIGKSGEREAIIVDEIPYQVNKAKLVEKIGELVREKTIEGIAELRDE 301 Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364 S +D ++ R+ + ++++ ++ L+ ++ F +NM L G+ P+++ L IL E+ Sbjct: 302 SDKDGTRIVIELKRNENAEVILNQLYKLTQLQDTFGINMVALVDGQ-PRLLNLKQILSEF 360 Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---------------- 408 L HRREV+ RR+ FR++ I +G +A NIDE+IA+I+ Sbjct: 361 LRHRREVVTRRTLFRLKKARAEGHIAEGKAVALSNIDEMIALIKASSDVEAAREALLGRA 420 Query: 409 -----------------NEDKPKPVMVSR------FSLTENQVDAILNLRLRSLRKLEEY 445 + +P+ + +R + L++ Q AIL + LR+L L++ Sbjct: 421 WQSSLVSEMLGRSDLDLTQARPEWLPENRGLQADGYWLSDEQARAILRMSLRNLTGLDQD 480 Query: 446 QIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRA 505 +I E L+A + +L ++ I E+ E+K F RR+ Sbjct: 481 EIVKEYKELMAIIVDLLDILAKPERVRQIIEDELVEMKSQFGDE-----RRSEINAFGGG 535 Query: 506 DKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL--------SALHFKEGDSLKIALHA 557 D A + +I + V +++ G+I++ + A K+ D ++ A Sbjct: 536 DIA--DEDLIPPRDMVVTLTHGGYIKTQPTSDYQAQRRGGRGKQAAATKDEDFIETLFIA 593 Query: 558 HTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602 +T D ++ + G K Y LP G S G I +I L+ N+ + Sbjct: 594 NTHDYLMCFTNLGRCHWIKVYRLPEGGRNS---RGRPINNVIQLDENEKV 640 >gi|124516515|gb|EAY58023.1| DNA gyrase, A subunit [Leptospirillum rubarum] gi|206603408|gb|EDZ39888.1| DNA gyrase, A subunit [Leptospirillum sp. Group II '5-way CG'] Length = 816 Score = 373 bits (958), Expect = e-101, Method: Compositional matrix adjust. Identities = 254/748 (33%), Positives = 406/748 (54%), Gaps = 42/748 (5%) Query: 30 YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89 YL Y++S I RA+PD+RDG KPV RR++ AM EMG+ G ++KSARIVG+VIGK HPH Sbjct: 20 YLNYSMSVIVGRALPDVRDGLKPVQRRVLFAMQEMGVRSGGPYRKSARIVGDVIGKYHPH 79 Query: 90 GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDE 149 GD +VYD+ VRL QPF RYPLI GQGNFG++DGD+ AA RYTE R+ ++E ++ ++E Sbjct: 80 GDVAVYDTAVRLVQPFTLRYPLIDGQGNFGSVDGDAPAAMRYTEIRLEALSEEMMAELEE 139 Query: 150 DAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDN 209 + V+F Y+E EP V P++ P LL NG++GIAVGMAT+IP HN+ EI + LALIDN Sbjct: 140 ETVEFAPNYDESLQEPRVLPARLPLLLLNGSAGIAVGMATNIPPHNITEIIDGLLALIDN 199 Query: 210 PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS-WCI 268 P++S++ LL + GPDFPTGG+I+ R I + R GRG +R +EE R I Sbjct: 200 PDLSVDDLLAIVHGPDFPTGGLIM-GRSGIESALRTGRGSIVMRGVAEIEESTRADRMAI 258 Query: 269 VVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMES 328 ++ EIPYQV K+RLIE+IAEL+ + + DIRDES D V+ R +P +++ Sbjct: 259 IIREIPYQVNKARLIERIAELVREGALEGIADIRDESDRDGMRVVIDLKRDANPPVVLNR 318 Query: 329 IFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVE 388 ++ + ++T F N L R P ++ L L +L+ R++V+ RR+ FR++ R Sbjct: 319 LYAQTPLQTSFGYNFVALVNQR-PMILSLREALVHFLSFRQDVVTRRTLFRLRKARERFH 377 Query: 389 ILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVDAILNLRLRSLRKLEEY 445 IL+GL A +D+IIA+IR+ P +V +F+ +E Q AIL++RL+ L LE Sbjct: 378 ILEGLKRAIDLMDQIIALIRSSASPDAARTGLVEQFAFSEIQARAILDMRLQRLTALERD 437 Query: 446 QIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRA 505 +I +E + + ++ +L S + I E ++E + + RRT Sbjct: 438 KIDAEYEEVRLLIRGLEDILGSRSRLMAVIREEFTALRENYGDA-----RRTRIVP---E 489 Query: 506 DKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL--------SALHFKEGDSLKIALHA 557 D ++MI +P + ++ +G+I+ + + S + KE D++ I L Sbjct: 490 DGEISIESMIPNDPCYITLTYQGYIKRVSHDAYPTQRRGGKGRSGVALKEDDAVIITLTP 549 Query: 558 HTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDI-----VTAFVYDS 610 + IL + GK Y + A + + G+ ++ + L + + V +F D Sbjct: 550 TAHETILFFTDIGKVYRVKAHEIPEVQRTARGKPVRGFLPLAPEEKVTRMLNVASFEGDR 609 Query: 611 TCKLLVVSSKGNAFIVEESEIIANT---RKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGE 666 + + V+ I++ + + A + + G L + +++ V+ D HV V Sbjct: 610 SLVFVTVNG-----IIKRTALSAYSSIRQSGIIALTLREGDRLAQVLVADADSHVLVATR 664 Query: 667 NRKLLIFSIDQIPEMSR-GKGVR-LQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSEN 724 ++F I ++ E R GVR ++ +D ++D + + + G Y + + Sbjct: 665 RGMAILFPIHEVTEQGRTASGVRAIRLREDDRVADAEIVTETDPVAVVTEKG--YGKRLD 722 Query: 725 DLLGWLGKRGGVGSLVPKGFPRSGKFLS 752 RGG+G + +G + G +S Sbjct: 723 VAKFRHQHRGGMGLKISRGAEKIGAVVS 750 >gi|325267296|ref|ZP_08133958.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Kingella denitrificans ATCC 33394] gi|324981233|gb|EGC16883.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Kingella denitrificans ATCC 33394] Length = 902 Score = 373 bits (958), Expect = e-101, Method: Compositional matrix adjust. Identities = 243/752 (32%), Positives = 396/752 (52%), Gaps = 89/752 (11%) Query: 7 SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66 +N + +E + VSL +++ YL YA+S I RA+PD+RDG KPVHRR+++AM E+ Sbjct: 4 ANDHQFAKETI-PVSLEDEMKKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELKN 62 Query: 67 DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126 ++ +A+KKSAR+VG+VIGK HPHGD +VY ++VR+AQPF RY L+ GQGNFG++DGD+A Sbjct: 63 NWNSAYKKSARVVGDVIGKYHPHGDSAVYQTIVRMAQPFSMRYMLVDGQGNFGSVDGDAA 122 Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186 AA RYTE RM ++A +L ++E+ V+F D Y+ + EP+V P++FP LL NG+ GIAVG Sbjct: 123 AAMRYTEIRMAKIAHEMLADIEEETVNFGDNYDGSEREPLVLPTRFPALLVNGSEGIAVG 182 Query: 187 MATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLG 246 MATSIP HN+++ L L+++PE I++L++ + PDFPTG I I Y+ G Sbjct: 183 MATSIPPHNLRDTLAGCLKLLNDPETGIDELIDIVKAPDFPTGATIY-GLTGIRAGYQTG 241 Query: 247 RGGFRVRARWCVEEVGRGS--WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304 RG +R++ +E +G+ IVV EIPYQV KS+L+EKI EL+ K + + ++RDE Sbjct: 242 RGRVVIRSKSHIEPIGKNGEREAIVVDEIPYQVNKSKLVEKIGELVREKTVEGIAELRDE 301 Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364 S +D ++ R + ++++ ++ L+ ++ F +NM L G+ P+++ L IL E+ Sbjct: 302 SDKDGTRIVIELKRGENAEVVLNQLYKLTQLQDTFSINMVALVDGQ-PRLLNLKQILNEF 360 Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSR- 420 L HRREV+ RR+ FR++ I +G +A NIDE+IA+I+ + D + ++ R Sbjct: 361 LRHRREVVTRRTLFRLKKARAEGHIAEGKAVALSNIDEMIALIKASADVDAAREALMGRA 420 Query: 421 -----------------------------------FSLTENQVDAILNLRLRSLRKLEEY 445 + L++ Q AIL + LR+L L++ Sbjct: 421 WQSALVSEMLSRSDLDLTLARPEWLPENRGLHPDGYWLSDEQARAILRMSLRNLTGLDQD 480 Query: 446 QIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRA 505 +I E +L+ + +L ++ I E+ E++ F RR+ Sbjct: 481 EIVKEYKSLMDIIMDLLDILAKPERVRQIIEGELVEMQTQFGDE-----RRSEINPFGGG 535 Query: 506 DKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL--------SALHFKEGDSLKIALHA 557 D A + +I + V +++ G+I++ + A K+ D ++ A Sbjct: 536 DIA--DEDLIPPREMVVTLTHGGYIKTQPTSDYQAQKRGGRGKQAAATKDEDFIETLFVA 593 Query: 558 HTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI-----VTAFV 607 +T D ++ + G K Y LP G S G I +I L+ + + V F Sbjct: 594 NTHDYLMCFTNLGRCHWIKVYRLPEGGRNS---RGRPINNVIQLDDGEKVSAILPVREFP 650 Query: 608 YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGEN 667 D + ++ G V+ S + KG + + + + V K +G + Sbjct: 651 EDEY--VFFATAMGVVKKVQLSAFKNVSVKGIKAIALKEGDSLVGVAKTSG--------S 700 Query: 668 RKLLIFSIDQIPEMSRGKGVRLQSYKDGGISD 699 +++FS + GK +R Y GG D Sbjct: 701 SDIMLFS-------NLGKAIRFNEYWAGGAGD 725 >gi|192382542|gb|ACF04292.1| GyrA [Neisseria meningitidis] gi|192382544|gb|ACF04293.1| GyrA [Neisseria meningitidis] Length = 916 Score = 373 bits (958), Expect = e-101, Method: Compositional matrix adjust. Identities = 227/628 (36%), Positives = 352/628 (56%), Gaps = 65/628 (10%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 VSL + + YL YA+S I RA+PD+RDG KPVHRR+++AM E+ ++ AA+KKSARIV Sbjct: 19 VSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIV 78 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGD +VYD++VR+AQ F RY LI GQGNFG++DG +AAA RYTE RM ++ Sbjct: 79 GDVIGKYHPHGDTAVYDTIVRMAQNFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMAKI 138 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 + +L ++E+ V+F Y+ + EP+V P++FP LL NG+SGIAVGMAT+IP HN+ + Sbjct: 139 SHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGSSGIAVGMATNIPPHNLSDT 198 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 A L L+D P+ I++L++ I PDFPTG I + E Y+ GRG +R + +E Sbjct: 199 VNACLRLLDAPDTEIDELIDIIQAPDFPTGATIY-GLSGVREGYKTGRGRVVMRGKTHIE 257 Query: 260 EVGRGS--WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317 +GR IV+ EIPYQV K++L+EKI +L+ K + + ++RDES + V+ Sbjct: 258 PIGRNGEREAIVIDEIPYQVNKAKLVEKIGDLVREKTLEGISELRDESDKSGMRVVIELK 317 Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377 R+ + ++++ ++ L+ ++ F +NM VL G+ P+++ L IL E+L HRREV+ RR+ Sbjct: 318 RNENAEVVLNQLYKLTPLQDSFGINMVVLVDGQ-PRLLNLKQILSEFLRHRREVVTRRTL 376 Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSR-------------- 420 FR++ I +G +A NIDEII +I+ N + K +++R Sbjct: 377 FRLKKARHEGHIAEGKAVALSNIDEIIKLIKESPNAAEAKDKLLARPWRSSLVEEMLTRS 436 Query: 421 ----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458 + L+E Q DAIL + LR+L L++ +I NL+ + Sbjct: 437 GLDLEMMRPEGLAANIGLKEQGYYLSEIQADAILRMSLRNLTGLDQEEIVESYKNLMGKI 496 Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518 +L+ ++ I E+ E+K T+ G R + D A + +I + Sbjct: 497 IDFVDILSKPERITQIIRDELEEIK------TNYGDERRSEINPFGGDIA--DEDLIPQR 548 Query: 519 PITVVISNRGWIRSLKSHSVDL--------SALHFKEGDSLKIALHAHTTDRILLLSTDG 570 + V +++ G+I++ + A K+ D ++ A+T D ++ + G Sbjct: 549 EMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDYLMCFTNLG 608 Query: 571 KA-----YTLPAGNLLS-GRGHGEAIQL 592 K Y LP G S GR IQL Sbjct: 609 KCHWIKVYKLPEGGRNSRGRPINNVIQL 636 >gi|307128512|ref|YP_003880542.1| DNA gyrase A subunit [Candidatus Sulcia muelleri CARI] gi|306482974|gb|ADM89844.1| DNA gyrase A subunit [Candidatus Sulcia muelleri CARI] Length = 799 Score = 373 bits (958), Expect = e-101, Method: Compositional matrix adjust. Identities = 214/661 (32%), Positives = 377/661 (57%), Gaps = 34/661 (5%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 +E + +++ ++ Y Y++S I RA+PD+RDG KPVHRR+++ M E G F ++ Sbjct: 4 KEKIITINIEDEMKSSYRDYSMSVIVSRALPDVRDGLKPVHRRVLYGMYEQGALFSKNYR 63 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSARIVG V+GK HPHGD SVYD++VR+AQ + RY LI GQGNFG+ID D AA RYTE Sbjct: 64 KSARIVGNVLGKYHPHGDSSVYDAIVRMAQSWSLRYLLIDGQGNFGSIDNDPPAAMRYTE 123 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 ++ +++E +L ++++ VD + +++ EP+V P+ PNLL NG+SGIAVGMAT++P Sbjct: 124 IKLKKISEEMLLDLEKETVDMKLNFDDSCKEPIVLPTCIPNLLINGSSGIAVGMATNMPP 183 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E EA + ID +ISIE+L++YI PDFPTGGII E + + + GRG +R Sbjct: 184 HNIVESIEAICSYIDKKKISIEELMKYIKAPDFPTGGIIY-GYEGVKKYFLTGRGKILLR 242 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313 ++ EE+ C++V EIPYQ+ K LI K +L+ ++ L +IRDES + ++ Sbjct: 243 SKVHFEEIN-NRICLIVDEIPYQINKEELINKTLKLVKEGKLEGLSNIRDESDRNGMRIV 301 Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373 + +++D L+ ++F + +ET F +N L G+ P ++ L ++K ++ HR +V+ Sbjct: 302 YNIKQNVDKQRLLNNLFKETSLETSFHVNNIALVNGK-PTILNLKDLIKHFVNHRHDVII 360 Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN----EDKPKPVMVSRFSLTENQVD 429 RR+ + + R I++G I N++ +I +I++ D K +++ +++L+E QV Sbjct: 361 RRTKYDLNQAKNRAHIIEGFYIVLNNLETVIELIKSSKDRNDAKKKILI-KYNLSEIQVK 419 Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489 +IL L+L SL KLE +IK E ++ + + ++++ Q I E+ VK +K Sbjct: 420 SILELKLNSLTKLENKKIKEEYIHIRKKIYFLKKIISNKFLQKKIIKKELNIVK---TKY 476 Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGD 549 DL R + + + + I+N G+I+ + + + + + Sbjct: 477 GDLRRTEINYLGLENE---------VYNNKFVITITNTGYIKKNYLNKYKIGVTYKCKKN 527 Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAFV 607 +L+ + A IL +GK + L + + + G+AIQ LI +N + I ++ + Sbjct: 528 NLEKIIIAKNYQDILFFYENGKYFLLKVFKIPEVLKKSKGQAIQNLIKINKKEKICSSIL 587 Query: 608 --------YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGD 659 Y + +++++ G I++++ +I + K +K+ +++ + + K+T + Sbjct: 588 IEKNNDKKYLNKNYVILITKNG---IIKKTTLIQYYKNPKNLIKIINKDYI-IYAKLTNE 643 Query: 660 H 660 + Sbjct: 644 N 644 >gi|315657694|ref|ZP_07910576.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|315492166|gb|EFU81775.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 847 Score = 373 bits (958), Expect = e-101, Method: Compositional matrix adjust. Identities = 228/620 (36%), Positives = 339/620 (54%), Gaps = 49/620 (7%) Query: 4 DNISNSNTLVEE---------------NVKAVSLRFALEERYLAYALSTIKERAIPDLRD 48 DN N+++ VEE V V L +++ Y+ YA+S I RA+PD+RD Sbjct: 3 DNQDNNDSEVEEIIHSDAPVITEAESTRVMQVDLEKEMKKSYMDYAMSVIVGRALPDVRD 62 Query: 49 GFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQR 108 G KPVHRR+I+ M + G + K R+VG+V+G HPHGD SVYD+L RL QP+ R Sbjct: 63 GLKPVHRRVIYTMYDGGYRPNGGYSKCMRVVGDVLGHFHPHGDSSVYDALARLVQPWSMR 122 Query: 109 YPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVF 168 YPL++GQGNFG+ AA RYTE +M +A +++ +DED VDF D Y+ EP V Sbjct: 123 YPLVAGQGNFGSPGNLGPAAPRYTECKMATLAMEMVRDIDEDTVDFMDNYDGRSQEPTVL 182 Query: 169 PSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKL----LEYIIGP 224 PS+ PNLL NG+ GIAVGMAT IP HN++E+ +AA + NPE + E+L L+ I GP Sbjct: 183 PSRIPNLLINGSEGIAVGMATRIPPHNLREVADAAQWYLQNPEATREELLAACLQRIKGP 242 Query: 225 DFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIE 284 DFPTG I+ R I E+YR GRG RA VEE+ G C+V TE+PYQV L Sbjct: 243 DFPTGATIL-GRRGIEETYRTGRGSITQRAVVNVEELN-GRTCLVATELPYQVNPDNLQV 300 Query: 285 KIAELIIAKRIPLLEDIRDESAE--DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLN 342 KIA+L+ ++ + DIRDE+++ RIV+ K R P +++ +++ + ++ FP N Sbjct: 301 KIAQLVKDGQLQGIADIRDETSDRAGTRIVVVLK-RDAVPKVVLNNLYKRTQLQDSFPAN 359 Query: 343 MNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDE 402 M L G VP+ + +DG + W+AH+ +V+ RR++FR+ R+ IL+G L A +DE Sbjct: 360 MLALVDG-VPRTLSIDGFIHYWIAHQVDVIKRRTAFRLAKAQERLHILQGYLAALDALDE 418 Query: 403 IIAIIR---NEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKE 459 +IA+IR + + ++ + E Q DAIL L+LR L LE +I E L A+ Sbjct: 419 VIALIRRSPTAEDARVGLMDFLKVDEVQADAILALQLRRLAALERQKILDEHAELEAKVA 478 Query: 460 KIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEP 519 +L ++Q + ++ E+ E+ + + R+TT D + +I +E Sbjct: 479 DFKDILARPERQRSIVSEELGEITDKWGDE-----RKTTIVPF---DGEMSMEDLIPEED 530 Query: 520 ITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG- 570 + V I+ G+ RS + +E D ++ + D +L + G Sbjct: 531 VVVTITRGGYAKRTRVDAYRSQHRGGKGIKGASLREEDQVEHFFTTSSHDWLLFFTNFGR 590 Query: 571 ----KAYTLPAGNLLSGRGH 586 KAY +P G S H Sbjct: 591 VYRAKAYEIPEGGRDSKGQH 610 >gi|261400307|ref|ZP_05986432.1| DNA gyrase, A subunit [Neisseria lactamica ATCC 23970] gi|269209927|gb|EEZ76382.1| DNA gyrase, A subunit [Neisseria lactamica ATCC 23970] Length = 916 Score = 373 bits (958), Expect = e-101, Method: Compositional matrix adjust. Identities = 227/628 (36%), Positives = 351/628 (55%), Gaps = 65/628 (10%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 VSL + + YL YA+S I RA+PD+RDG KPVHRR+++AM E+ ++ AA+KKSARIV Sbjct: 19 VSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIV 78 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGD +VYD++VR+AQ F RY LI GQGNFG++DG +AAA RYTE RM ++ Sbjct: 79 GDVIGKYHPHGDTAVYDTIVRMAQNFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMAKI 138 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 + +L ++E+ V+F Y+ + EP+V P++FP LL NG+SGIAVGMAT+IP HN+ + Sbjct: 139 SHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPALLVNGSSGIAVGMATNIPPHNLSDT 198 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 A L L+D P+ I++L++ I PDFPTG I + E Y+ GRG +RA+ E Sbjct: 199 VNACLRLLDAPDTEIDELIDIIQAPDFPTGATIY-GLSGVREGYKTGRGRVVIRAKTHTE 257 Query: 260 EVGRGS--WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317 +G+ IV+ EIPYQV K++L+EKI +L+ K + + ++RDES + V+ Sbjct: 258 PIGKNGEREAIVIDEIPYQVNKAKLVEKIGDLVREKTLEGISELRDESDKSGMRVVIELK 317 Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377 R+ + ++++ ++ L+ ++ F +NM VL G+ P+++ L IL E+L HRREV+ RR+ Sbjct: 318 RNENAEVVLNQLYKLTQLQDSFGINMVVLVDGQ-PRLLNLKQILSEFLRHRREVVTRRTL 376 Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSR-------------- 420 FR++ I +G +A NIDEII +I+ N + K ++SR Sbjct: 377 FRLKKARHEGHIAEGKAVALSNIDEIIRLIKESPNAAEAKEKLLSRSWRSSLVEEMLTRS 436 Query: 421 ----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458 + L+E Q DAIL + LR+L L+ +I NL+ + Sbjct: 437 GLDLEMMRPEGLAANIGLKEQGYYLSEIQADAILRMSLRNLTGLDREEIVESYKNLMGKI 496 Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518 +L+ ++ I E+ E+K T+ G R E++ + +I + Sbjct: 497 IDFVDILSKPERITRIIRDELEEIK------TNYGDER--LSEINPFGGDIADEDLIPQR 548 Query: 519 PITVVISNRGWIRSLKSHSVDL--------SALHFKEGDSLKIALHAHTTDRILLLSTDG 570 + V +++ G+I++ + A K+ D ++ A+T D ++ + G Sbjct: 549 EMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDYLMCFTNLG 608 Query: 571 KA-----YTLPAGNLLS-GRGHGEAIQL 592 K Y LP G S GR IQL Sbjct: 609 KCHWIKVYKLPEGGRNSRGRPINNVIQL 636 >gi|15677247|ref|NP_274400.1| DNA gyrase subunit A [Neisseria meningitidis MC58] gi|254805179|ref|YP_003083400.1| DNA gyrase subunit A [Neisseria meningitidis alpha14] gi|7226624|gb|AAF41750.1| DNA gyrase subunit A [Neisseria meningitidis MC58] gi|254668721|emb|CBA06523.1| DNA gyrase subunit A [Neisseria meningitidis alpha14] gi|308389502|gb|ADO31822.1| DNA gyrase subunit A [Neisseria meningitidis alpha710] gi|316984203|gb|EFV63181.1| DNA gyrase, A subunit [Neisseria meningitidis H44/76] gi|325128426|gb|EGC51307.1| DNA gyrase, A subunit [Neisseria meningitidis N1568] gi|325130461|gb|EGC53221.1| DNA gyrase, A subunit [Neisseria meningitidis OX99.30304] gi|325134379|gb|EGC57024.1| DNA gyrase, A subunit [Neisseria meningitidis M13399] gi|325140397|gb|EGC62918.1| DNA gyrase, A subunit [Neisseria meningitidis CU385] gi|325199996|gb|ADY95451.1| DNA gyrase, A subunit [Neisseria meningitidis H44/76] gi|325205849|gb|ADZ01302.1| DNA gyrase, A subunit [Neisseria meningitidis M04-240196] Length = 916 Score = 373 bits (958), Expect = e-101, Method: Compositional matrix adjust. Identities = 227/628 (36%), Positives = 352/628 (56%), Gaps = 65/628 (10%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 VSL + + YL YA+S I RA+PD+RDG KPVHRR+++AM E+ ++ AA+KKSARIV Sbjct: 19 VSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIV 78 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGD +VYD++VR+AQ F RY LI GQGNFG++DG +AAA RYTE RM ++ Sbjct: 79 GDVIGKYHPHGDTAVYDTIVRMAQNFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMAKI 138 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 + +L ++E+ V+F Y+ + EP+V P++FP LL NG+SGIAVGMAT+IP HN+ + Sbjct: 139 SHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGSSGIAVGMATNIPPHNLSDT 198 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 A L L+D P+ I++L++ I PDFPTG I + E Y+ GRG +R + +E Sbjct: 199 VNACLRLLDAPDTEIDELIDIIQAPDFPTGATIY-GLSGVREGYKTGRGRVVMRGKTHIE 257 Query: 260 EVGRGS--WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317 +GR IV+ EIPYQV K++L+EKI +L+ K + + ++RDES + V+ Sbjct: 258 PIGRNGEREAIVIDEIPYQVNKAKLVEKIGDLVREKTLEGISELRDESDKSGMRVVIELK 317 Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377 R+ + ++++ ++ L+ ++ F +NM VL G+ P+++ L IL E+L HRREV+ RR+ Sbjct: 318 RNENAEVVLNQLYKLTPLQDSFGINMVVLVDGQ-PRLLNLKQILSEFLRHRREVVTRRTL 376 Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSR-------------- 420 FR++ I +G +A NIDEII +I+ N + K +++R Sbjct: 377 FRLKKARHEGHIAEGKAVALSNIDEIIKLIKESPNAAEAKDKLLARPWRSSLVEEMLTRS 436 Query: 421 ----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458 + L+E Q DAIL + LR+L L++ +I NL+ + Sbjct: 437 GLDLEMMRPEGLAANIGLKEQGYYLSEIQADAILRMSLRNLTGLDQEEIVESYKNLMGKI 496 Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518 +L+ ++ I E+ E+K T+ G R + D A + +I + Sbjct: 497 IDFVDILSKPERITQIIRDELEEIK------TNYGDERRSEINPFGGDIA--DEDLIPQR 548 Query: 519 PITVVISNRGWIRSLKSHSVDL--------SALHFKEGDSLKIALHAHTTDRILLLSTDG 570 + V +++ G+I++ + A K+ D ++ A+T D ++ + G Sbjct: 549 EMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDYLMCFTNLG 608 Query: 571 KA-----YTLPAGNLLS-GRGHGEAIQL 592 K Y LP G S GR IQL Sbjct: 609 KCHWIKVYKLPEGGRNSRGRPINNVIQL 636 >gi|282878900|ref|ZP_06287664.1| DNA gyrase, A subunit [Prevotella buccalis ATCC 35310] gi|281298899|gb|EFA91304.1| DNA gyrase, A subunit [Prevotella buccalis ATCC 35310] Length = 857 Score = 373 bits (958), Expect = e-101, Method: Compositional matrix adjust. Identities = 237/709 (33%), Positives = 378/709 (53%), Gaps = 54/709 (7%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 +++ ++ Y+ Y++S I RA+PD+RDGFKPVHRRI++ M + +KK AR+V Sbjct: 3 INIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMLGISNTSDKPYKKCARVV 62 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 GEV+GK HPHGD SVY +LVRLAQ + RY L+ GQGNFG++DGDSAAA RYTE R++++ Sbjct: 63 GEVLGKYHPHGDSSVYGALVRLAQDWNMRYTLVDGQGNFGSVDGDSAAAMRYTECRLSKM 122 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 E ++ +D+D VD + +++ EP V P++ PNLL NG +GIAVGMAT++P+HN++E+ Sbjct: 123 GEHVMDDLDKDTVDMANNFDDTLQEPTVMPTRIPNLLVNGGNGIAVGMATNMPTHNLREV 182 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 E A IDNPEI +++L+++I PDFPTG I + + ++Y GRG +RA+ +E Sbjct: 183 IEGCCAYIDNPEIELDELMKHIQAPDFPTGAYIY-GLQGVKDAYETGRGRIIIRAKAEIE 241 Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLFPKNR 318 IVVTEIPY V K +LIE IA L+ ++ + ++ DES + +RIV+ K R Sbjct: 242 S-DESHDKIVVTEIPYGVNKQQLIEYIAALVKEGKLDGISNVNDESGRQGMRIVIDIK-R 299 Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378 + ++++ +F ++ +++ F +N L GR P+++ L +K ++ HR +V RR+ F Sbjct: 300 DANANVILNKLFKMTALQSSFSVNNIALVKGR-PRLLSLKECVKYFVEHRHDVTIRRTKF 358 Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS---RFSLTENQVDAILNLR 435 ++ R IL+GL+IA NIDE++ IIR P + RF L Q AI+++R Sbjct: 359 ELKKAQERAHILEGLIIACDNIDEVVHIIRGSKTPSEAQTNLEKRFDLDNLQSKAIVDMR 418 Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495 L L L Q+ +E D L ++++L+ + + E+ EVKE + R Sbjct: 419 LSQLTGLRMDQLHAEYDELEKLIAYLENILSDPELCKKVMKDELNEVKEKYGDD-----R 473 Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKE 547 RT A + +P+ + +S+ G+I R V ++ Sbjct: 474 RTKIIPDEHEFNA---EDFYPNDPVVITVSHLGYIKRTPLSDFREQARGGVGSKGATHRD 530 Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTA 605 D + A +L + G+ Y L N+ G G AIQ L++++ + Sbjct: 531 QDFTEFIYPATMHQTMLFFTKKGRCYWLKCYNIPEGAKDSKGRAIQNLLNIDSD------ 584 Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG---KTFLKVSSEEKMKLVVKVT---GD 659 D+ +L + + + ++ T+ G KT L+ S + V+ + GD Sbjct: 585 ---DAINAILRLRGLNDEEFINSHYVVFATKNGTVKKTSLEAYSRPRTNGVIAINIAEGD 641 Query: 660 HVAVV----GENRKLLI--------FSIDQIPEMSR-GKGVRLQSYKDG 695 V V GEN ++ F + + M R GVR DG Sbjct: 642 EVVDVRLTNGENELIMANRNGRAVRFDENTVRTMGRTATGVRGMRLDDG 690 >gi|296127876|ref|YP_003635126.1| DNA gyrase, A subunit [Cellulomonas flavigena DSM 20109] gi|296019691|gb|ADG72927.1| DNA gyrase, A subunit [Cellulomonas flavigena DSM 20109] Length = 870 Score = 373 bits (958), Expect = e-101, Method: Compositional matrix adjust. Identities = 228/617 (36%), Positives = 356/617 (57%), Gaps = 55/617 (8%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + V L+ ++ YL YA++ I RA+PD+RDG KPVHRR+++AM + G F K + Sbjct: 13 IDQVDLQLEMQRSYLDYAMAVIVGRALPDVRDGLKPVHRRVLYAMYDGGYRPDRQFSKCS 72 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+V+GK HPHGD ++YD+LVRL Q + RYPL++GQGNFG+ D AAA RYTE +M Sbjct: 73 RVVGDVMGKYHPHGDSAIYDALVRLVQDWSLRYPLVAGQGNFGSPGDDPAAAPRYTECKM 132 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 +A +++ +DEDAVDF+D Y+ EP V PS+FPNLL NG++GIAVGMAT+IP HN+ Sbjct: 133 APLAMEMVRDIDEDAVDFQDNYDGHTQEPAVLPSRFPNLLVNGSAGIAVGMATNIPPHNL 192 Query: 197 QEICEAALALIDNPEISIEKLLEYII----GPDFPTGGIIVESRESIVESYRLGRGGFRV 252 +E+ +++P+ S E+LLE ++ GPDFPT I+ R+ I E+YR GRG + Sbjct: 193 REVAAGVQWHLEHPDASKEELLEALMARIKGPDFPTAATIL-GRKGIEEAYRTGRGSITM 251 Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV--R 310 RA VEE+ +G C+VVTE+PYQV L +KIA+L+ R+ + DIRDE++ R Sbjct: 252 RAVVEVEEI-QGRQCLVVTELPYQVNPDTLAKKIADLVKDNRVQGIADIRDETSGRAGQR 310 Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370 +V+ K ++ +++ +++ + ++ F NM L G VP+ + +D ++ W++H+ + Sbjct: 311 LVIVLKRDAV-AKVVLNNLYKHTQLQDTFGANMLALVDG-VPRTLSIDAFVRHWVSHQID 368 Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQ 427 V+ RR+ FR++ + + I +G L A +DE+IA+IR + ++ + ++ + E Q Sbjct: 369 VIQRRTRFRLRKAEEDIHIYRGYLKALDALDEVIALIRRSPDAEEARNGLMELLGIDELQ 428 Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487 AILNL+LR L L+ +I D L A+ +++++L S ++Q ++ E+ V + F Sbjct: 429 AQAILNLQLRRLAALQRQEIMDRHDALEADITELNAILGSPERQRTIVSEELATVVDKFG 488 Query: 488 KSTDLGRRRTTFC----EVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLKS 535 RRT EVS D +I +E + V I+ G+ R+ + Sbjct: 489 DE-----RRTHILPFDGEVSIED-------LIAEEDVVVTITRGGYAKRTRVDAYRAQRR 536 Query: 536 HSVDLSALHFKEGDSLKIALHAHTTDRILLLSTD------GKAYTLP----------AGN 579 + +E D L TT R LL T+ KAY LP N Sbjct: 537 GGKGVRGAQLRE-DDLVDHFFVTTTHRWLLFFTNLGRVYRAKAYELPEAGRDAKGQHVAN 595 Query: 580 LLSGRGHGEAIQLLIDL 596 LL+ + GE I ++DL Sbjct: 596 LLAFQ-PGEKIAQVLDL 611 >gi|229818509|ref|YP_002880035.1| DNA gyrase, A subunit [Beutenbergia cavernae DSM 12333] gi|229564422|gb|ACQ78273.1| DNA gyrase, A subunit [Beutenbergia cavernae DSM 12333] Length = 885 Score = 373 bits (958), Expect = e-101, Method: Compositional matrix adjust. Identities = 224/634 (35%), Positives = 359/634 (56%), Gaps = 44/634 (6%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 + V+ V L+ ++ YL YA+S I RA+P++RDG KPVHRR+++AM + G +AF K Sbjct: 30 DRVEQVDLQLEMQRSYLDYAMSVIVGRALPEVRDGLKPVHRRVLYAMFDGGYRPDSAFSK 89 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 AR+VG+V+G HPHGD ++YD+LVRL QP+ RYPL++GQGNFG+ DSAAA RYTE Sbjct: 90 CARVVGDVMGNYHPHGDTAIYDALVRLVQPWSMRYPLVAGQGNFGSPGDDSAAAPRYTEC 149 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 +M +A +++ +D+D VDF D Y+ EP++ P++FPNLL NG++GIAVGMAT+IP H Sbjct: 150 KMAPLAMEMVRDIDKDTVDFGDNYDGRTQEPLILPARFPNLLVNGSAGIAVGMATNIPPH 209 Query: 195 NVQEICEAALALIDNPEISIEKLLEYII----GPDFPTGGIIVESRESIVESYRLGRGGF 250 N++E+ E +++P+ + E+LL ++ GPDFPTG I+ R I ++YR GRG Sbjct: 210 NLREVAEGVEWFLEHPDATNEELLGALLLRIKGPDFPTGAQILGHR-GIEDAYRTGRGSI 268 Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV- 309 +RA VEE+ +G C+VVTE+PYQV RL KI E++ RI + D+RDE++ Sbjct: 269 TMRAVVEVEEI-QGRQCLVVTELPYQVNPDRLAAKIGEMVREGRISGIADLRDETSGRAG 327 Query: 310 -RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368 R+V+ K ++ +++ +++ + ++ F NM L G VP+ + LD ++ W H+ Sbjct: 328 QRLVIVLKRDAV-AKVVLNNLYKHTQLQDTFGANMLALVDG-VPRTLSLDAFVRHWTMHQ 385 Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTE 425 +V+ RR+ + + +RR+ IL+GLL A +DE+IA+IR + D+ + ++ + E Sbjct: 386 IDVIVRRTRYLLAEDERRIHILRGLLKALNALDEVIALIRRSPSSDEARTGLMELLEIDE 445 Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485 Q AIL+++LR L LE+ +I E + A +L S ++Q + + E+ + E Sbjct: 446 VQATAILDMQLRRLAALEQQRIMDEHAAIEARILDYQDILASEERQRSIVRSELGAIVER 505 Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV------- 538 + RRTT D + +I +E + V I+ G+ + ++ + Sbjct: 506 YGDE-----RRTTILPF---DGEMSVEDLIPEEDVVVTITRGGYAKRTRTDNYRAQRRGG 557 Query: 539 -DLSALHFKEGDSLKIALHAHTTDRILLLSTD------GKAYTLPAGNLLSGR-GHGEAI 590 + +E D + TT LL T+ K Y LP G GR G+ + Sbjct: 558 KGVRGAQLREDDVVD-HFFVTTTHHWLLFFTNLGRVYRAKGYELPEG----GRDAKGQHV 612 Query: 591 QLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKG 621 L+ + I YD L++ + +G Sbjct: 613 ANLLAFQPGEKIAQVLALRDYDQADYLVLATKRG 646 >gi|331266199|ref|YP_004325829.1| topoisomerase IV subunit A, ParC [Streptococcus oralis Uo5] gi|326682871|emb|CBZ00488.1| topoisomerase IV subunit A, ParC [Streptococcus oralis Uo5] Length = 826 Score = 373 bits (957), Expect = e-101, Method: Compositional matrix adjust. Identities = 227/709 (32%), Positives = 399/709 (56%), Gaps = 33/709 (4%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 N++ +SL + ER+ Y+ I++RA+PD+RDG KPV RRI+++M++ G F +++KS Sbjct: 3 NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDGNTFDKSYRKS 62 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 A+ VG ++G HPHGD S+YD++VR++Q + R L+ GN G++DGD AA RYTEAR Sbjct: 63 AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 ++++A +LQ +++ V F +++ + EP V P+ FPNLL NG++GI+ G AT IP HN Sbjct: 123 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 182 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 + E+ +A + +ID+P ++KL+E++ GPDFPTGGII + R+ I ++Y G+G VR++ Sbjct: 183 LAEVIDATVYMIDHPTAKVDKLMEFLPGPDFPTGGII-QGRDEIKKAYETGKGRVAVRSK 241 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315 +E++ G IV+TEIPY++ K+ L++KI ++ + ++ + ++RDES D + Sbjct: 242 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 301 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 + + +L++ +F +D++ + NM + P+ + + IL ++AHRREV+ R Sbjct: 302 LKKDANTELVLNYLFKYTDLQINYNFNMVAID-NFTPRQVGIVPILSSYIAHRREVILAR 360 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432 S F + ++R+ I++GL+ +DE+IA+IR N+ K + + TE Q +AI+ Sbjct: 361 SRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYEFTEEQAEAIV 420 Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492 L+L L + ++ E L + + ++++ + +N + E+REVK+ F+ Sbjct: 421 TLQLYRLTNTDVVVLQEEEAELREKIAMLAAIISDERTMYNLMKKELREVKKKFATP--- 477 Query: 493 GRRRTTFCEVSRA---DKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FK 546 R +T + ++A D A+L I +E V ++ G+I+ S S L + Sbjct: 478 --RLSTLEDTAKAIEIDTASL----IAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKR 531 Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIV 603 + D L A TT +L+ +T G P L R GE + Q + + N++I+ Sbjct: 532 DDDRLIFVQSAKTTQHLLMFTTLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEIL 591 Query: 604 TAFV---YDSTCKLLVVSSKGNAFIVEESEIIA-NTRKGKT--FLKVSSE-EKMKLVVKV 656 A V +D + G VE E T K K+ + K+ E +++ V + Sbjct: 592 YAEVVDQFDDATTYFAATRLGQIKRVERKEFSPWRTYKSKSVKYAKLKDETDQIVAVAPI 651 Query: 657 TGDHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYK--DGGISDVIC 702 D V ++ +N L F+I+++P +S + GV+ + K D + IC Sbjct: 652 KLDDVLLISQNGYALRFNIEEVPVVSAKAAGVKAMNLKADDALQAAFIC 700 >gi|298345810|ref|YP_003718497.1| DNA topoisomerase [Mobiluncus curtisii ATCC 43063] gi|304390486|ref|ZP_07372439.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|298235871|gb|ADI67003.1| DNA topoisomerase (ATP-hydrolyzing) [Mobiluncus curtisii ATCC 43063] gi|304326242|gb|EFL93487.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Mobiluncus curtisii subsp. curtisii ATCC 35241] Length = 847 Score = 373 bits (957), Expect = e-101, Method: Compositional matrix adjust. Identities = 228/620 (36%), Positives = 339/620 (54%), Gaps = 49/620 (7%) Query: 4 DNISNSNTLVEE---------------NVKAVSLRFALEERYLAYALSTIKERAIPDLRD 48 DN N+++ VEE V V L +++ Y+ YA+S I RA+PD+RD Sbjct: 3 DNQDNNDSEVEEIIHSDAPVITEAESTRVMQVDLEKEMKKSYMDYAMSVIVGRALPDVRD 62 Query: 49 GFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQR 108 G KPVHRR+I+ M + G + K R+VG+V+G HPHGD SVYD+L RL QP+ R Sbjct: 63 GLKPVHRRVIYTMYDGGYRPNGGYSKCMRVVGDVLGHFHPHGDSSVYDALARLVQPWSMR 122 Query: 109 YPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVF 168 YPL++GQGNFG+ AA RYTE +M +A +++ +DED VDF D Y+ EP V Sbjct: 123 YPLVAGQGNFGSPGNLGPAAPRYTECKMATLAMEMVRDIDEDTVDFMDNYDGRSQEPTVL 182 Query: 169 PSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKL----LEYIIGP 224 PS+ PNLL NG+ GIAVGMAT IP HN++E+ +AA + NPE + E+L L+ I GP Sbjct: 183 PSRIPNLLINGSEGIAVGMATRIPPHNLREVADAAQWYLQNPEATREELLAACLQRIKGP 242 Query: 225 DFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIE 284 DFPTG I+ R I E+YR GRG RA VEE+ G C+V TE+PYQV L Sbjct: 243 DFPTGATIL-GRRGIEETYRTGRGSITQRAVVNVEELN-GRTCLVATELPYQVNPDNLQV 300 Query: 285 KIAELIIAKRIPLLEDIRDESAE--DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLN 342 KIA+L+ ++ + DIRDE+++ RIV+ K R P +++ +++ + ++ FP N Sbjct: 301 KIAQLVKDGQLQGIADIRDETSDRAGTRIVVVLK-RDAVPKVVLNNLYKRTQLQDSFPAN 359 Query: 343 MNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDE 402 M L G VP+ + +DG + W+AH+ +V+ RR++FR+ R+ IL+G L A +DE Sbjct: 360 MLALVDG-VPRTLSIDGFIHYWIAHQVDVIKRRTAFRLAKAQERLHILQGYLAALDALDE 418 Query: 403 IIAIIR---NEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKE 459 +IA+IR + + ++ + E Q DAIL L+LR L LE +I E L A+ Sbjct: 419 VIALIRRSPTAEDARVGLMDFLKVDEVQADAILALQLRRLAALERQKILDEHAELEAKVA 478 Query: 460 KIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEP 519 +L ++Q + ++ E+ E+ + + R+TT D + +I +E Sbjct: 479 DFKDILARPERQRSIVSEELGEITDKWGDE-----RKTTIVPF---DGEMSMEDLIPEED 530 Query: 520 ITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG- 570 + V I+ G+ RS + +E D ++ + D +L + G Sbjct: 531 VVVTITRGGYAKRTRVDAYRSQHRGGKGIKGASLREEDQVEHFFTTSSHDWLLFFTNFGR 590 Query: 571 ----KAYTLPAGNLLSGRGH 586 KAY +P G S H Sbjct: 591 VYRAKAYEIPEGGRDSKGQH 610 >gi|16331582|ref|NP_442310.1| DNA gyrase subunit A [Synechocystis sp. PCC 6803] gi|8469101|sp|Q55738|GYRA_SYNY3 RecName: Full=DNA gyrase subunit A gi|1001649|dbj|BAA10380.1| DNA gyrase A subunit [Synechocystis sp. PCC 6803] Length = 860 Score = 373 bits (957), Expect = e-101, Method: Compositional matrix adjust. Identities = 239/699 (34%), Positives = 382/699 (54%), Gaps = 46/699 (6%) Query: 19 AVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78 A LR + + YL YA+S I RA+PD RDG KPVHRRI++AM E+GL F+K AR+ Sbjct: 10 ATDLRNEMSQSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTPDRPFRKCARV 69 Query: 79 VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQ 138 VGEV+GK HPHGD +VYD+LVR+AQ F R PLI G GNFG++D D AA RYTE+R+ Sbjct: 70 VGEVLGKYHPHGDTAVYDALVRMAQDFSMREPLIDGHGNFGSVDNDPPAAMRYTESRLRP 129 Query: 139 VA-ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197 ++ +L+ ++ + VDF D ++ EP V P++ P LL NG+SGIAVGMAT+IP HN+ Sbjct: 130 LSTNSLLRDIEAETVDFIDNFDGSQQEPTVLPARIPQLLINGSSGIAVGMATNIPPHNLG 189 Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257 E+ + A+ALI NPEI+ ++L++ I GPDFPTG I+ R I E+Y GRG +R Sbjct: 190 EVIDGAIALIRNPEITEQELMQIIPGPDFPTGAQIL-GRSGIREAYLTGRGSITMRGVAS 248 Query: 258 VEEV---GRGSW-CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313 +E + GR I+VTE+PYQ K+ LIE+IA+L+ K+I + DIRDES D ++ Sbjct: 249 IETMEHPGRPDRDAIIVTELPYQTNKAALIERIADLVNDKKIDGIADIRDESDRDGMRIV 308 Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373 R +++ +++ + +++ F N+ L G P+V+ + L + R E + Sbjct: 309 IELKRDAYARVVLNNLYKQTPIQSNFGANLLALVNG-TPEVLTIKKFLTVFWEFRIETIT 367 Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDA 430 RR+ + ++ + R +L+GLLIA N+D +I +IR + K +V FSL+E Q DA Sbjct: 368 RRTRYELRKAEERDHLLQGLLIALDNLDAVIRLIRGAADTASAKTELVEGFSLSEVQADA 427 Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490 IL ++LR L LE +I +E D L + +L ++ I E+ ++K I + Sbjct: 428 ILQMQLRRLTALEADKITAEHDELQTKIADFQDILARRERVNAIIEEELEQIKAIHATP- 486 Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL--------SA 542 RRT + D + +I + ++++ +G+I+ + + + +A Sbjct: 487 ----RRTVIVQ---EDGELIDTDLIANDQALILLTEQGYIKRMPASTFGTQNRATRGKAA 539 Query: 543 LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGN--LLSGRGHGEAIQLLIDLNHNQ 600 K+ D ++ L D++L S G Y+L A + S G I ++ + ++ Sbjct: 540 AKIKDDDGVEHFLSCCDHDKVLFFSDRGVVYSLNAYQIPIASRTARGVPIVQMLPIPKDE 599 Query: 601 DI---VTAFVYDSTCKLLVVSSKG-------NAFIVEESEIIANTRKGKTFLKVSSEEKM 650 I V+ +D ++++ +G +AF S I AN G + + +++ Sbjct: 600 KITSLVSVSEFDDDTYFIMLTKQGYIKKTALSAF----SNIRAN---GLIAISLVEGDQL 652 Query: 651 KLVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSRGKGVR 688 + V + ++G + + I F DQ + G+ R Sbjct: 653 RWVRLAKAEDSVIIGSQKGMAIHFKADQDELRALGRATR 691 >gi|329850840|ref|ZP_08265685.1| DNA gyrase, A subunit [Asticcacaulis biprosthecum C19] gi|328841155|gb|EGF90726.1| DNA gyrase, A subunit [Asticcacaulis biprosthecum C19] Length = 935 Score = 373 bits (957), Expect = e-101, Method: Compositional matrix adjust. Identities = 226/607 (37%), Positives = 327/607 (53%), Gaps = 52/607 (8%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 + + +S+ L+ YL YA+S I RA+PD RDG KPVHRRII+AM E G + K Sbjct: 29 QGIAYISIEAELKRSYLDYAMSVIVSRALPDARDGLKPVHRRIIYAMHEEGRTSDKKYVK 88 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 SA IVG+V+G+ HPHGD ++YD+LVR+AQPF L+ GQGNFG++DGD AA RYTE+ Sbjct: 89 SANIVGDVMGRYHPHGDSAIYDALVRMAQPFSMSLLLVDGQGNFGSVDGDPPAAMRYTES 148 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 RMT+ AE ++ +++ +DF D Y+ EP V PS+ PNLL NG GIAVGMAT+IP H Sbjct: 149 RMTKAAEALVADIEKQTIDFTDNYDGSRREPSVLPSRIPNLLVNGAGGIAVGMATNIPPH 208 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 N+ EI +A LA++D+P +S+E LL + GPD+PTGG I+ R + GRG R Sbjct: 209 NLGEIVDACLAVLDDPSVSMEDLLSIVPGPDYPTGGEIL-GRSGARLALMTGRGSVVTRG 267 Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314 + +E + + IV+TEIPYQV KS +IE IAEL+ KRI + D+RDES V+ Sbjct: 268 KASIETIRKDREAIVITEIPYQVNKSSMIEHIAELVRDKRIEGISDVRDESDRQGMRVVV 327 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 R D+++ ++ + ++T F +NM L GR PQ M L +L +L R +V+ R Sbjct: 328 ELKRDASGDVILNQLYRFTSLQTSFGVNMLALDHGR-PQQMGLRRLLDIFLDFREDVVVR 386 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPK-----------------PVM 417 R F + R +L G+ IA NIDE+I IIR+ P P++ Sbjct: 387 RIRFELNKARDRGHVLVGMTIAVANIDEVIHIIRSSADPSEARERLCAKTWPSGDMAPLI 446 Query: 418 ------------VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLL 465 ++ LT+ Q AIL L L L L +I E L + +L Sbjct: 447 DLIADPRSIVLEGAQVRLTDEQARAILALTLSRLTGLGRDEIGDEARALSSAIAGYLEIL 506 Query: 466 NSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVIS 525 +S ++ + E+ EVK F+ RRT E ++ + +I +E + V ++ Sbjct: 507 SSRERIMAIVREELVEVKAQFAVP-----RRTQIAE---SEGDIEDEDLIPREDMVVTVT 558 Query: 526 NRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT--- 574 + G++ R S + K+ D++ A T +L S+ GKA+ Sbjct: 559 HSGYVKRTPLSMYREQHRGGKGRSGMAMKDEDAIIGVYTASTHQPMLFFSSTGKAFKLKV 618 Query: 575 --LPAGN 579 LP GN Sbjct: 619 WRLPVGN 625 >gi|152980640|ref|YP_001354365.1| DNA gyrase subunit A [Janthinobacterium sp. Marseille] gi|151280717|gb|ABR89127.1| DNA gyrase subunit A [Janthinobacterium sp. Marseille] Length = 873 Score = 373 bits (957), Expect = e-101, Method: Compositional matrix adjust. Identities = 223/610 (36%), Positives = 345/610 (56%), Gaps = 61/610 (10%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 +SL + + YL YA+S I RA+PD+RDG KPVHRR++ AM EM + F K AR+V Sbjct: 11 ISLEEEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEMNNVWNRPFVKCARVV 70 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 GE +GK HPHGD S+YD+LVR+AQPF RY L+ GQGNFG+IDGD+AAA RYTE R+ ++ Sbjct: 71 GETMGKYHPHGDASIYDTLVRMAQPFSLRYMLVDGQGNFGSIDGDNAAAMRYTECRLDKI 130 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A +L +D++ VDF Y+ ++ EP V P++ PNLL NG+SGIAVGMAT+IP HN+ E+ Sbjct: 131 AGELLADLDKETVDFVPNYDGKEKEPSVLPTRIPNLLINGSSGIAVGMATNIPPHNITEV 190 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 + AL ++ N + ++++L+E I PDFPTGGII + + YR GRG +RA+ E Sbjct: 191 IDGALHVLRNADATVDELIEIIPAPDFPTGGIIY-GVSGVRDGYRTGRGRVVMRAKTHFE 249 Query: 260 EVGR-GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318 E G+ I+V E+PYQV K L+E+IAEL+ K++ + DIRDES + V+ R Sbjct: 250 EFGKENRAAIIVDELPYQVNKKSLLERIAELVRDKKLDGISDIRDESDKSGMRVVIELKR 309 Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378 + P++++ +++ + ++ F +NM L G+ P+++ L +L+ +L+HRREV+ RR+ F Sbjct: 310 NEVPEVVLNNLYKQTQLQDTFGMNMVALVDGQ-PKLLNLKQMLECFLSHRREVVTRRTIF 368 Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV-----------------MVSR- 420 ++ R +L+GL +A NID+ IAII+ P PV M++R Sbjct: 369 ELRKARERGHVLEGLAVALANIDDFIAIIKAAPTP-PVAKVDLMSRAWDSSVVREMLART 427 Query: 421 ---------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453 + L+++Q IL +RL+ L LE+ +I +E Sbjct: 428 GEEGVGGVNAFRPENLPKHYGIQADGLYKLSDDQAQEILQMRLQRLTGLEQDKIVNEYKE 487 Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513 ++ + + +L ++ I E+ K + RR T E++ D T + Sbjct: 488 VMEQIADLLDILAKPERVTVIITDELTVAKNEYGIGNKDERRST--IELNATDLGT--ED 543 Query: 514 MIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565 +I + + V +S+ G++ R+ K A+ K+ D + A+T D IL Sbjct: 544 LITPQDMVVTLSHTGYMKAQPISEYRAQKRGGRGKQAMATKDDDWIDQLFIANTHDYILC 603 Query: 566 LSTDGKAYTL 575 S G+ Y L Sbjct: 604 FSNRGRLYWL 613 >gi|329890203|ref|ZP_08268546.1| DNA gyrase, A subunit [Brevundimonas diminuta ATCC 11568] gi|328845504|gb|EGF95068.1| DNA gyrase, A subunit [Brevundimonas diminuta ATCC 11568] Length = 913 Score = 373 bits (957), Expect = e-101, Method: Compositional matrix adjust. Identities = 238/684 (34%), Positives = 368/684 (53%), Gaps = 63/684 (9%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 ++ +++ L+ YL YA+S I RA+PD RDG KPVHRRI+++M ++ + A+ K Sbjct: 5 DISTITIEDELKRSYLDYAMSVIVSRALPDARDGLKPVHRRILYSMHDLNMTPERAYSKC 64 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 AR+VG+V+G+ HPHGD SVY +LVR+AQ F L+ GQGNFG++DGD A+ RYTEA+ Sbjct: 65 ARVVGDVLGRFHPHGDASVYMALVRMAQDFSMGLMLVDGQGNFGSVDGDMPASMRYTEAK 124 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 M A +L +D+D VDF+ Y+E++ EPVV P++ PNLL NG GIAVGMAT+IP HN Sbjct: 125 MAPAAVALLTDIDKDTVDFQPNYDEKELEPVVLPARIPNLLVNGAGGIAVGMATNIPPHN 184 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 ++E+ +AA+AL+D+P++S + LL+ + GPDFPTGG I+ R + + R GRG VR + Sbjct: 185 LREVIDAAVALLDDPDVSDDALLDIVPGPDFPTGGEIM-GRTAPRNALRDGRGSVIVRGK 243 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE-DVRIVLF 314 +EE+ + I++TE+P+QV K LIE+IAE++ KR+ + D+RDES +RIV+ Sbjct: 244 ASIEEIRKDRDAIIITELPFQVNKQTLIERIAEMVREKRLEGIADVRDESDRLGMRIVIE 303 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K R D+++ ++ + +++ F +NM L+ GR P+ M L +L+ +L R EV+ R Sbjct: 304 LK-RDASGDVILNQLYRYTALQSSFGVNMLALNHGR-PEQMGLRKLLELFLDFREEVVVR 361 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP--------------------- 413 R F + R +L GL +A NIDE+I IIR+ P Sbjct: 362 RVKFELAKARDRGHVLVGLAVAVANIDEVIHIIRSSADPAEARERLQAKAWPVGDMMALV 421 Query: 414 ------KPVMV--SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLL 465 + V+V + LT+ Q AIL L L L L I E L + ++L Sbjct: 422 ELIADPRTVLVEGDKIRLTDEQARAILALTLSRLTGLGRDDIFGEARTLADTIQGHLTIL 481 Query: 466 NSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVIS 525 + K I ++ VK+ F RRT E D + +I +E + V ++ Sbjct: 482 SDRKNVLAIIREDLLLVKDQFGVD-----RRTLIGE---GDAEMEDEDLIPREDMVVTVT 533 Query: 526 NRGWIRSLKSHSVDL--------SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT--- 574 + G+++ + ++ S + K+ D + A T +L +T+GKAY Sbjct: 534 HSGYVKRVALNAYRTQHRGGKGRSGMAMKDEDVVTSVFSASTHTPVLFFATNGKAYKLKT 593 Query: 575 --LPAGNLLSGRGHGEAIQLLIDLNHNQDI--VTAFVYDSTC----KLLVVSSKGNAFIV 626 LP GN S G+A L+ + I V D T ++ + G+ Sbjct: 594 WRLPLGNPQS---RGKAFVNLLPIEPGDSIMNVLPLPEDETTWGDYDIMFATQSGDVRRN 650 Query: 627 EESEIIANTRKGKTFLKVSSEEKM 650 + S+ R GK +K+ + M Sbjct: 651 KLSDFATVNRAGKIAMKLEDGDGM 674 >gi|126656709|ref|ZP_01727923.1| DNA gyrase subunit A [Cyanothece sp. CCY0110] gi|126621929|gb|EAZ92637.1| DNA gyrase subunit A [Cyanothece sp. CCY0110] Length = 862 Score = 373 bits (957), Expect = e-101, Method: Compositional matrix adjust. Identities = 219/588 (37%), Positives = 337/588 (57%), Gaps = 26/588 (4%) Query: 11 TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70 T+ ++ + L + YL YA+S I RA+PD RDG KPVHRRI++AM E+GL Sbjct: 2 TIPQDRIIPTDLSNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTPDR 61 Query: 71 AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130 F+K AR+VGEV+GK HPHGD +VYD+LVR+AQ F R PLI G GNFG++D D AA R Sbjct: 62 PFRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRSPLIEGHGNFGSVDNDPPAAMR 121 Query: 131 YTEARMTQVA-ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189 YTE R+ ++ +L+ ++ D VDF D ++ EP+V P++ P LL NG+SGIAVGMAT Sbjct: 122 YTECRLQALSTNALLRDIEADTVDFADNFDGSQQEPIVLPARVPQLLLNGSSGIAVGMAT 181 Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249 +IP HN+ E+ + +ALI NPE+S ++L++ I GPDFPTGG I+ R I ++Y GRG Sbjct: 182 NIPPHNLGELIDGTIALIHNPELSEKELIKIIPGPDFPTGGQIL-GRSGIHDAYMTGRGS 240 Query: 250 FRVRARWCVEEV---GRGSW-CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305 +R +E + GR I++T++PYQ K+ LIE+IA+L+ KRI + DIRDES Sbjct: 241 ITMRGVAQIETIEQRGRPDREAIIITQLPYQTNKAALIERIADLVNEKRIDGISDIRDES 300 Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365 D V+ R P +++ +I+ + ++ F NM L G PQ++ + L +L Sbjct: 301 DRDGMRVVIELKRDAYPRVVLNNIYKQTPVQGNFGANMLALVNGE-PQLLTIKEFLSVFL 359 Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFS 422 R E + RR+ + ++ + R +L+GLLIA N+D +I +IR + K +V F Sbjct: 360 DFRIETITRRTQYELRKAEERDHLLQGLLIALDNLDAVIQLIRRAADTSSAKDELVQEFG 419 Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482 L+ Q DAIL ++LR L LE +I +E + L + + +L ++ I E+ ++ Sbjct: 420 LSPVQADAILQMQLRRLTALEAEKIHAEHEELQLKIADLQDILARRERIEAIIEEELTQI 479 Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL-- 540 K I + RRT E+ D + +I E ++++ +G+I+ + + + Sbjct: 480 KTIHATP-----RRT---EIVHDDGEIVDTDLIANEQAIILLTEQGYIKRMPVSTFEAQQ 531 Query: 541 ------SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS 582 +A K+ D ++ L D++L S G Y + A + S Sbjct: 532 RATRGKAAAKIKDDDVVEHFLTCCDHDQVLFFSDRGVVYAVNAYQIPS 579 >gi|192382554|gb|ACF04298.1| GyrA [Neisseria lactamica] Length = 912 Score = 373 bits (957), Expect = e-101, Method: Compositional matrix adjust. Identities = 227/628 (36%), Positives = 351/628 (55%), Gaps = 65/628 (10%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 VSL + + YL YA+S I RA+PD+RDG KPVHRR+++AM E+ ++ AA+KKSARIV Sbjct: 19 VSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIV 78 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGD +VYD++VR+AQ F RY LI GQGNFG++DG +AAA RYTE RM ++ Sbjct: 79 GDVIGKYHPHGDTAVYDTIVRMAQNFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMAKI 138 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 + +L ++E+ V+F Y+ + EP+V P++FP LL NG+SGIAVGMAT+IP HN+ + Sbjct: 139 SHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPALLVNGSSGIAVGMATNIPPHNLSDT 198 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 A L L+D P+ I++L++ I PDFPTG I + E Y+ GRG +RA+ E Sbjct: 199 VNACLRLLDAPDTEIDELIDIIQAPDFPTGATIY-GLSGVREGYKTGRGRVVIRAKTHTE 257 Query: 260 EVGRGS--WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317 +G+ IV+ EIPYQV K++L+EKI EL+ K + + ++RDES + V+ Sbjct: 258 PIGKNGEREAIVIDEIPYQVNKAKLVEKIGELVREKTLEGISELRDESDKSGMRVVIELK 317 Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377 R+ + ++++ ++ L+ ++ F +NM VL G+ P+++ L IL E+L HRREV+ RR+ Sbjct: 318 RNENAEVVLNQLYKLTPLQDSFGINMVVLVDGQ-PRLLNLKQILSEFLRHRREVVTRRTL 376 Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSR-------------- 420 FR++ I +G +A +IDEII +I+ N + K ++SR Sbjct: 377 FRLKKARHEGHIAEGKAVALSDIDEIIRLIKESPNAAEAKEKLLSRSWRSSLVEEMLTRS 436 Query: 421 ----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458 + L+E Q DAIL + LR+L L+ +I NL+ + Sbjct: 437 GLDLGMMRPEGLAANIGLKEQGYYLSEIQADAILRMSLRNLTGLDREEIVESYKNLMGKI 496 Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518 +L+ ++ I E+ E+K T+ G R E++ + +I + Sbjct: 497 IDFVDILSKPERITRIIRDELEEIK------TNYGDER--LSEINPFGGDIADEDLIPQR 548 Query: 519 PITVVISNRGWIRSLKSHSVDL--------SALHFKEGDSLKIALHAHTTDRILLLSTDG 570 + V +++ G+I++ + A K+ D ++ A+T D ++ + G Sbjct: 549 EMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDYLMCFTNLG 608 Query: 571 KA-----YTLPAGNLLS-GRGHGEAIQL 592 K Y LP G S GR IQL Sbjct: 609 KCHWIKVYKLPEGGRNSRGRPINNVIQL 636 >gi|86738730|ref|YP_479130.1| DNA gyrase subunit A [Frankia sp. CcI3] gi|86565592|gb|ABD09401.1| DNA gyrase subunit A [Frankia sp. CcI3] Length = 834 Score = 373 bits (957), Expect = e-101, Method: Compositional matrix adjust. Identities = 250/761 (32%), Positives = 407/761 (53%), Gaps = 51/761 (6%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 + ++ + + ++ YL YA+S I RA+P++RDG KPVHRR+++AM + G + K Sbjct: 11 DRIEPIGIEVEMQRSYLDYAMSVIVGRALPEVRDGLKPVHRRVLYAMYDGGYRPDRGYFK 70 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 +R+VG+V+G HPHGD ++YD+LVRLAQ + RYPL+ G GNFG+ D AA RYTEA Sbjct: 71 CSRVVGDVMGNYHPHGDTAIYDTLVRLAQGWSLRYPLVDGNGNFGSPGNDPPAAMRYTEA 130 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 RM +A +L+ +D++ VDF Y+ EP+V PS+FPNLL NG GIAVGMAT+IP H Sbjct: 131 RMAPLAMEMLRDIDQETVDFAPNYDGRSQEPLVLPSRFPNLLVNGAGGIAVGMATNIPPH 190 Query: 195 NVQEICEAALALIDNPEISIEKLLEYII----GPDFPTGGIIVESRESIVESYRLGRGGF 250 N++E+ + +D+P+ S +LLE +I GPDFPT G+IV R I E+YR GRG Sbjct: 191 NLREVAKGVRWALDHPDASDSELLEALIGLIKGPDFPTSGLIV-GRNGIEEAYRTGRGSI 249 Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV- 309 R+RA VEE +G +VVTE+PYQV L EKIAEL+ R+ + D+RDE++ + Sbjct: 250 RMRAVVNVEE-NKGRTQLVVTELPYQVNPDNLAEKIAELVRDNRVTGIADVRDETSARIG 308 Query: 310 -RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368 R+V+ K R +++ +++ + ++ F +NM + G VP+ + LD +++ ++ H+ Sbjct: 309 QRLVIDLK-RDAVAKVVLNNLYKHTQLQDTFGVNMLAIVDG-VPRTLRLDQMVRYYVEHQ 366 Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLTE 425 +V+ RR+ ++++ R+ +L GLLIA ++DE+I +IRN D + ++ RFSL+E Sbjct: 367 IDVIVRRTRYQLRKARERLHVLDGLLIALDHLDEVINLIRNAESADVARGQLMERFSLSE 426 Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485 Q AIL+++LR L LE +I E L A+ ++++L S +Q I E+ EV E Sbjct: 427 IQATAILDMQLRRLAALERQRIIDEAAELRAKISDLEAILASPTRQRQIIGEELAEVVEK 486 Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHS 537 F RRT D + + +I +E + V ++ G+ RS + Sbjct: 487 FGDE-----RRTRLVPFE-GDMSI--EDLIAQEDVVVTVTRGGYAKRTKTDLYRSQRRGG 538 Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLID 595 + +E D ++ T +L + G+ Y A L + G+ + ++ Sbjct: 539 KGVQGAALREDDIVEHFFVTTTHHWLLFFTNKGRVYRAKAHELPEQARSAKGQHVANILA 598 Query: 596 LNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM-- 650 ++ I Y++ L++ + +G + +N G + + ++++ Sbjct: 599 FGQDERIAEVIAVKDYEAAPYLVLATKRGLCKKTALHDFDSNRAGGLVAINLRDDDELIA 658 Query: 651 -KLVVKVTGDHVAVVGENRKLLIFSID--QIPEMSRGK----GVRLQSYKDGGISDVICF 703 +LV GD + +V N + + F D Q+ M R G+R + + DV+ Sbjct: 659 ARLVAP--GDDLLLVSRNAQSIRFHADDEQLRPMGRATSGVIGMRFDAEDELLSMDVVVP 716 Query: 704 KICEGLTWIDSAGRSYNR--SENDLLGWLGKRGGVGSLVPK 742 L S G + +E + G RGG G L K Sbjct: 717 GTTADLLVATSGGYAKRTPLAEYPVQG----RGGKGVLTAK 753 >gi|160878168|ref|YP_001557136.1| DNA gyrase, A subunit [Clostridium phytofermentans ISDg] gi|160426834|gb|ABX40397.1| DNA gyrase, A subunit [Clostridium phytofermentans ISDg] Length = 899 Score = 373 bits (957), Expect = e-101, Method: Compositional matrix adjust. Identities = 217/578 (37%), Positives = 335/578 (57%), Gaps = 25/578 (4%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 + V V L+ +E Y+ YA+S I RA+PD+RDG KPV RRI++AM E+ +K Sbjct: 7 DKVHDVDLKKTMETSYIEYAMSVIAARALPDVRDGLKPVQRRILYAMIELNNGPDKPHRK 66 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 ARIVG+ +GK HPHGD S+Y +LV LAQ + RYPL+ G GNFG++DGD AAA RYTEA Sbjct: 67 CARIVGDTMGKYHPHGDSSIYGALVNLAQEWSTRYPLVDGHGNFGSVDGDGAAAMRYTEA 126 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 R+++++ +L +++D VDF ++E + EP+V P+++PNLL NGTSGIAVGMAT+IP H Sbjct: 127 RLSKISMEMLSDINKDTVDFAPNFDETEKEPLVLPARYPNLLVNGTSGIAVGMATNIPPH 186 Query: 195 NVQEICEAALALIDN----PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250 N++EI A + +IDN E +IE+LLE + GPDFPTG +I+ +R I E+YR GRG Sbjct: 187 NMREIIGAVVRIIDNKIEEKETTIEELLEIVKGPDFPTGAMILGTR-GIEEAYRTGRGKI 245 Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310 RVRA +E + G I+VTE+PY V K+RLIEKIAEL+ K+I + ++RDES + Sbjct: 246 RVRAVTNIEPMANGKNRIIVTELPYMVNKARLIEKIAELVRDKKIDGITELRDESDREGM 305 Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370 + R ++ ++++ ++ + ++ F + M L + P+V+ L +L +L H+ E Sbjct: 306 RICIELRRDVNANVILNQLYKHTQLQDTFGVIMLAL-VNNQPKVLTLLEMLSYYLKHQEE 364 Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQ 427 V+ RR ++ + R IL+GLL A IDE+I IIR N K ++ RF + Q Sbjct: 365 VVTRRITYDLNKAKERAHILEGLLKALDFIDEVINIIRASKNGAMAKERLIERFEFDDIQ 424 Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487 AI+++RLR+L LE +++ E L + +++L K I EI+ + + F Sbjct: 425 AQAIIDMRLRALTGLEREKLQDEFAELQRRIAEFEAILADEKLLLGVIKGEIQVINDKF- 483 Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD-------- 539 G R T D + + +I E + ++ G+I+ + + Sbjct: 484 -----GDERRTSIGFDEFDIS--MEDLIPDENTVIAMTRLGYIKRMTIDNFKSQHRGGKG 536 Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPA 577 + + + D ++ T I+ + G+ Y L A Sbjct: 537 IKGMQTIDEDFIEDLFMTTTHHYIMFFTNKGRVYRLKA 574 >gi|73916228|gb|AAZ92982.1| DNA gyrase subunit A [Streptococcus pneumoniae] Length = 774 Score = 372 bits (956), Expect = e-101, Method: Compositional matrix adjust. Identities = 236/660 (35%), Positives = 380/660 (57%), Gaps = 38/660 (5%) Query: 60 AMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG 119 M+E+G+ KKSARI G+V+GK HPHGD S+Y+++VR+AQ + RY L+ G GNFG Sbjct: 1 GMNELGVTPDKPHKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFG 60 Query: 120 NIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANG 179 ++DGDSAAA RYTEARM+++A +L+ ++++ VDF D Y+ + EP+V P++FPNLL NG Sbjct: 61 SMDGDSAAAQRYTEARMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNG 120 Query: 180 TSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESI 239 +GIAVGMAT+IP HN+ E +A ++DNPE++ + L+E + GPDFPTG +++ + I Sbjct: 121 ATGIAVGMATNIPPHNLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVM-GKSGI 179 Query: 240 VESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299 ++Y G+G +R+R +E G IVVTE PY V K+++ E I L+ KRI + Sbjct: 180 HKAYETGKGSIVLRSRTEIETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGIT 239 Query: 300 DIRDESA-EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLD 358 +RDES E VR V+ K R ++++ ++F ++ M+T F NM + G +P+++ L Sbjct: 240 AVRDESNREGVRFVIEVK-RDASANVILNNLFKMTQMQTNFGFNMLAIQNG-IPKILSLR 297 Query: 359 GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKP 415 IL ++ H++EV+ RR+ F + + R IL+GLLIA +IDE+I IIR + + + Sbjct: 298 QILDAYIEHQKEVVVRRTRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQA 357 Query: 416 VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQI 475 ++S+F L+E Q AIL++RLR L LE +I+SE D+LLA + +L ++ I Sbjct: 358 ELMSKFKLSERQTQAILDMRLRRLTGLERDKIQSEYDDLLALIADLADILAKPERVSQII 417 Query: 476 ACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSL- 533 E+ EVK FS +RRT E+ +L+ + +IE+ + + +SNRG+I+ L Sbjct: 418 KDELDEVKRKFSD-----KRRT---ELMVGQVLSLEDEDLIEESDVLITLSNRGYIKRLD 469 Query: 534 -------KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLS-GR- 584 K + K+ D ++ + T D +L + G+ Y L + GR Sbjct: 470 QDEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRT 529 Query: 585 GHGEAIQLLIDLNHNQDIVTAFVYDS----TCKLLVVSSKGNAFIVEESEI--IANTRK- 637 G + L+ L+ ++ I T +S L + G IV+ + + AN R+ Sbjct: 530 AKGLPVVNLLKLDEDESIQTVINVESDRSDDAYLFFTTRHG---IVKRTSVKEFANIRQN 586 Query: 638 GKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSR-GKGVRLQSYKDG 695 G L + E+++ V+ GD ++G + F+ + MSR GV+ + ++G Sbjct: 587 GLKALNLKDEDELINVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMSRIATGVKGVNLREG 646 >gi|319638198|ref|ZP_07992961.1| DNA gyrase subunit A [Neisseria mucosa C102] gi|317400471|gb|EFV81129.1| DNA gyrase subunit A [Neisseria mucosa C102] Length = 923 Score = 372 bits (956), Expect = e-101, Method: Compositional matrix adjust. Identities = 227/628 (36%), Positives = 352/628 (56%), Gaps = 65/628 (10%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 VSL + + YL YA+S I RA+PD+RDG KPVHRR+++AM E+ ++ +A+KKSARIV Sbjct: 19 VSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELKNNWNSAYKKSARIV 78 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGD +VYD++VR+AQ F RY LI GQGNFG++DG +AAA RYTE RM ++ Sbjct: 79 GDVIGKYHPHGDTAVYDTIVRMAQDFSMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMEKI 138 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 + +L ++E+ V+F Y+ + EP+V P++FP LL NG+SGIAVGMAT+IP HN+ + Sbjct: 139 SHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPALLVNGSSGIAVGMATNIPPHNLGDT 198 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 A L L+D PE I++L+ I PDFPTG I + E Y+ GRG +R + +E Sbjct: 199 INACLRLLDEPETEIDELINIIQAPDFPTGATIY-GLSGVREGYKTGRGRVVMRGKTHIE 257 Query: 260 EVGRGS--WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317 +G+ IV+ EIPYQV K++L+EKI EL+ K + + D+RDES + V+ Sbjct: 258 PIGKNGEREAIVIDEIPYQVNKAKLVEKIGELVREKTLEGVSDLRDESDKSGMRVVIELK 317 Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377 R+ + ++++ ++ L+ ++ F +NM L G+ P+++ L IL E+L HRREV+ RR+ Sbjct: 318 RNENAEVVLNQLYKLTQLQDSFGINMVALVDGQ-PRLLNLKQILSEFLRHRREVVTRRTL 376 Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSR-------------- 420 FR++ I +G +A NIDEII +I+ N + K ++SR Sbjct: 377 FRLKKARHEGHIAEGKAVALSNIDEIIRLIKESANAPEAKEKLLSRPWRSSLVEDMLSRT 436 Query: 421 ----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458 + L+E Q DAIL + LR+L L++ +I E NL+++ Sbjct: 437 DLDLQMMRPEGLPENLGLHSQGYYLSELQADAILRMSLRNLTGLDQEEIVGEYKNLMSKI 496 Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518 +L+ ++ I E+ ++K F RR+ E++ + +I + Sbjct: 497 IDFVDILSKPERVTQIIREELADIKANFGDE-----RRS---EINPFGGDIADEDLIPQR 548 Query: 519 PITVVISNRGWIRSLKSHSVDL--------SALHFKEGDSLKIALHAHTTDRILLLSTDG 570 + V +++ G+I++ + A K+ D ++ A+T D ++ + G Sbjct: 549 EMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDYLMCFTNLG 608 Query: 571 KA-----YTLPAGNLLS-GRGHGEAIQL 592 K Y LP G S GR IQL Sbjct: 609 KCHWIKVYKLPEGGRNSRGRPINNVIQL 636 >gi|171057647|ref|YP_001789996.1| DNA gyrase subunit A [Leptothrix cholodnii SP-6] gi|170775092|gb|ACB33231.1| DNA gyrase, A subunit [Leptothrix cholodnii SP-6] Length = 885 Score = 372 bits (956), Expect = e-101, Method: Compositional matrix adjust. Identities = 226/610 (37%), Positives = 342/610 (56%), Gaps = 61/610 (10%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 +SL + YL YA+S I RA+PD RDG KPVHRR++ AM E+ D+ +KKSARIV Sbjct: 11 ISLEEEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHELSNDWNRPYKKSARIV 70 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGD +VYD++VR+AQ F R+ L+ GQGNFG++DGD+AAA RYTE R+ ++ Sbjct: 71 GDVIGKYHPHGDTAVYDTIVRMAQDFSLRHMLVDGQGNFGSVDGDNAAAMRYTEIRLAKI 130 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A +L +D++ VDF Y+ + EP+V PS+ PNLL NG++GIAVGMAT+IP HN+ E+ Sbjct: 131 AHEMLADLDKETVDFGPNYDGSEKEPLVLPSRLPNLLVNGSTGIAVGMATNIPPHNLNEV 190 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 +A L L+ NPE SIE+L+E I PDFPT GII + E YR GRG +RA+ E Sbjct: 191 VDACLHLMKNPEASIEELMEIIPAPDFPTAGIIY-GINGVREGYRTGRGKVVMRAKVHFE 249 Query: 260 EVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318 ++ RG I+V E+PYQV K L E++AEL+ K+I + I+DES + ++ R Sbjct: 250 DIDRGQRQSIIVDELPYQVNKKTLQERMAELVHEKKIEGISHIQDESDKSGMRLVIELKR 309 Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378 P++++ +++ + ++ F +NM L G+ P++ L +L+ +L HRREV+ RR+ F Sbjct: 310 GEVPEVVLNNLYKQTQLQDTFGINMVALIDGQ-PKLCNLKQLLEIFLEHRREVVTRRTVF 368 Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV-----------------MVSR- 420 ++ R +L+GL +A NIDE I I+N P PV M++R Sbjct: 369 ELRKARDRGHVLEGLAVALANIDEFIETIKNSPTP-PVAKLALMSKSWDSSVVREMLTRA 427 Query: 421 ---------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453 + L+++Q IL +RL+ L LE+ +I E + Sbjct: 428 EGDTPGGRAAFRPEGLAPQFGMQADGLYRLSDDQAGEILQMRLQRLTGLEQDKIVGEYKD 487 Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513 ++A+ + +L + I E+ V++ F +S +G RR+ V + + Sbjct: 488 VMAQIADLLDILAKPARVTVIIGDELTAVRQEFGQSK-IGVRRSV---VEHNVQELGTED 543 Query: 514 MIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565 +I + V +S+ G+I R+ K A K+ D + A+T D +L Sbjct: 544 LITPTDMVVTLSHTGYIKSQPLAEYRAQKRGGRGKQATATKDDDWVDELFIANTHDWMLC 603 Query: 566 LSTDGKAYTL 575 S G+ Y L Sbjct: 604 FSNRGRVYWL 613 >gi|315654384|ref|ZP_07907292.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Mobiluncus curtisii ATCC 51333] gi|315491419|gb|EFU81036.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Mobiluncus curtisii ATCC 51333] Length = 847 Score = 372 bits (956), Expect = e-101, Method: Compositional matrix adjust. Identities = 228/620 (36%), Positives = 339/620 (54%), Gaps = 49/620 (7%) Query: 4 DNISNSNTLVEE---------------NVKAVSLRFALEERYLAYALSTIKERAIPDLRD 48 DN N+++ VEE V V L +++ Y+ YA+S I RA+PD+RD Sbjct: 3 DNQDNNDSEVEEIIHSDAPVITEAESTRVMQVDLEKEMKKSYMDYAMSVIVGRALPDVRD 62 Query: 49 GFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQR 108 G KPVHRR+I+ M + G + K R+VG+V+G HPHGD SVYD+L RL QP+ R Sbjct: 63 GLKPVHRRVIYTMYDGGYRPNGGYSKCMRVVGDVLGHFHPHGDSSVYDALARLVQPWSMR 122 Query: 109 YPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVF 168 YPL++GQGNFG+ AA RYTE +M +A +++ +DED VDF D Y+ EP V Sbjct: 123 YPLVAGQGNFGSPGNLGPAAPRYTECKMAALAMEMVRDIDEDTVDFMDNYDGRSQEPTVL 182 Query: 169 PSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKL----LEYIIGP 224 PS+ PNLL NG+ GIAVGMAT IP HN++E+ +AA + NPE + E+L L+ I GP Sbjct: 183 PSRIPNLLINGSEGIAVGMATRIPPHNLREVADAAQWYLQNPEATREELLAACLQRIKGP 242 Query: 225 DFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIE 284 DFPTG I+ R I E+YR GRG RA VEE+ G C+V TE+PYQV L Sbjct: 243 DFPTGATIL-GRRGIEETYRTGRGSITQRAVVNVEELN-GRTCLVATELPYQVNPDNLQV 300 Query: 285 KIAELIIAKRIPLLEDIRDESAE--DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLN 342 KIA+L+ ++ + DIRDE+++ RIV+ K R P +++ +++ + ++ FP N Sbjct: 301 KIAQLVKDGQLQGIADIRDETSDRAGTRIVVVLK-RDAVPKVVLNNLYKRTQLQDSFPAN 359 Query: 343 MNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDE 402 M L G VP+ + +DG + W+AH+ +V+ RR++FR+ R+ IL+G L A +DE Sbjct: 360 MLALVDG-VPRTLSIDGFIHYWIAHQVDVIKRRTAFRLAKAQERLHILQGYLAALDALDE 418 Query: 403 IIAIIR---NEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKE 459 +IA+IR + + ++ + E Q DAIL L+LR L LE +I E L A+ Sbjct: 419 VIALIRRSPTAEDARVGLMDFLKVDEVQADAILALQLRRLAALERQKILDEHAELEAKVA 478 Query: 460 KIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEP 519 +L ++Q + ++ E+ E+ + + R+TT D + +I +E Sbjct: 479 DFKDILARPERQRSIVSEELGEITDKWGDE-----RKTTIVPF---DGEMSMEDLIPEED 530 Query: 520 ITVVISNRGW--------IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG- 570 + V I+ G+ RS + +E D ++ + D +L + G Sbjct: 531 VVVTITRGGYAKRTRVDAYRSQHRGGKGIKGASLREEDQVEHFFTTSSHDWLLFFTNFGR 590 Query: 571 ----KAYTLPAGNLLSGRGH 586 KAY +P G S H Sbjct: 591 VYRAKAYEIPEGGRDSKGQH 610 >gi|294790229|ref|ZP_06755387.1| DNA gyrase, A subunit [Scardovia inopinata F0304] gi|294458126|gb|EFG26479.1| DNA gyrase, A subunit [Scardovia inopinata F0304] Length = 898 Score = 372 bits (956), Expect = e-101, Method: Compositional matrix adjust. Identities = 225/630 (35%), Positives = 354/630 (56%), Gaps = 40/630 (6%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 +K++ L+ + E YLAYALS I ERA+PD+RDG KPVHRR+I+AM + G + K + Sbjct: 21 IKSMDLQQEMRESYLAYALSVIVERALPDVRDGMKPVHRRVIYAMYDGGYRPDRGYNKCS 80 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+V+GK HPHGD ++YD+LVR+AQP+ RY L+ GQGNFG+ D AAA RYTE RM Sbjct: 81 RVVGDVMGKYHPHGDAAIYDTLVRMAQPWSMRYLLVDGQGNFGSPGDDPAAAMRYTECRM 140 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 +A +++ +D+D VDF Y+ + EP V PS+FPNLL NG++GIAVGMAT+IPSHN+ Sbjct: 141 APLAMELVRDIDKDTVDFVPNYDGKTQEPTVLPSRFPNLLVNGSAGIAVGMATNIPSHNM 200 Query: 197 QEICEAALALIDNPEISIEKLLEYII----GPDFPTGGIIVESRESIVESYRLGRGGFRV 252 +EI E +++PE S E+LL +I GPDFPTG I+ + I ++YR GRG + Sbjct: 201 REIAEGVHWALNHPEASREELLNNLIAIIKGPDFPTGATIL-GHKGIEQAYRTGRGLITM 259 Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV--R 310 RA EE+ G C+VVTE+PYQV RL I E + +I + D+RDE++ R Sbjct: 260 RAVVNTEEIN-GRLCLVVTELPYQVNPDRLASSIKEAVRDGKIQGIADMRDETSGRTGQR 318 Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370 +VL K R P +++ +++ + ++ F NM L G VP+ + LD ++ W+ H+ + Sbjct: 319 LVLVLK-RDAVPKVVLNNLYKHTQLQQTFGANMLALVDG-VPRTLSLDAFIRHWINHQLQ 376 Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQ 427 V+ RR+ + + + R IL+G L A I+E+IA+IR ++ + ++ + + Q Sbjct: 377 VVERRTRYLKREAEERDHILQGYLKALDMIEEVIALIRRSPDVEQARNGLMDLLDVDQIQ 436 Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487 DAIL ++LR L LE +I E + LL E + +L +Q + E+ E+ + + Sbjct: 437 ADAILAMQLRRLAALERQKIIDEHEELLRRIEDYNDILAKPDRQRKIVGDEMDEIVDKYG 496 Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------D 539 RRT S + +I +E + V +++ G+I+ K+ Sbjct: 497 DD-----RRTKILPFSGEMNV---EDLIAEENVVVTVTHSGYIKRTKADEYRAQHRGGKG 548 Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLI 594 + +E D + T + +L + G K Y +P G+ S G+ + L+ Sbjct: 549 IKGTRLREDDVVDHFFLTSTHNWLLFFTNQGRVYRIKGYEVPEGSRDS---KGQHVANLL 605 Query: 595 DLNHN---QDIVTAFVYDSTCKLLVVSSKG 621 L + Q +++ Y + L++ + G Sbjct: 606 QLGPDEKIQQVLSIKDYQTASYLVLATRSG 635 >gi|192382550|gb|ACF04296.1| GyrA [Neisseria meningitidis] Length = 916 Score = 372 bits (956), Expect = e-101, Method: Compositional matrix adjust. Identities = 229/628 (36%), Positives = 353/628 (56%), Gaps = 65/628 (10%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 VSL + + YL YA+S I RA+PD+RDG KPVHRR+++AM E+ ++ AA+KKSARIV Sbjct: 19 VSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIV 78 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGD +VYD++VR+AQ F RY LI GQGNFG++DG +AAA RYTE RM ++ Sbjct: 79 GDVIGKYHPHGDTAVYDTIVRMAQNFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMAKI 138 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 + +L ++E+ V+F Y+ + EP+V P++FP LL NG+SGIAVGMAT+IP HN+ + Sbjct: 139 SHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGSSGIAVGMATNIPPHNLSDT 198 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 A L L+D P+ I++L++ I PDFPTG I + E Y+ GRG +R + +E Sbjct: 199 VNACLRLLDAPDTEIDELIDIIQAPDFPTGATIY-GLSGVREGYKTGRGRVVMRGKTHIE 257 Query: 260 EVGRGS--WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317 +GR IV+ EIPYQV K++L+EKI +L+ K + + ++RDES + V+ Sbjct: 258 PIGRNGEREAIVIDEIPYQVNKAKLVEKIGDLVREKTLEGISELRDESDKSGMRVVIELK 317 Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377 R+ + ++++ ++ L+ ++ F +NM VL G+ P+++ L IL E+L HRREV+ RR+ Sbjct: 318 RNENAEVVLNQLYKLTPLQDSFGINMVVLVDGQ-PRLLNLKQILSEFLRHRREVVTRRTL 376 Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN-----EDKPKPV-----------MVSR- 420 FR++ I +G +A NIDEII +I+ E K K + M++R Sbjct: 377 FRLKKARHEGHIAEGKAVALSNIDEIIKLIKESPNAAEAKDKLLAHPWRSSLVEEMLTRS 436 Query: 421 ----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458 + L+E Q DAIL + LR+L L++ +I NL+ + Sbjct: 437 GLDLEMMRPEGLAANIGLKEQGYYLSEIQADAILRMSLRNLTGLDQEEIVESYKNLMGKI 496 Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518 +L+ ++ I E+ E+K T+ G R + D A + +I + Sbjct: 497 IDFVDILSKPERITQIIRDELEEIK------TNYGDERRSEINPFGGDIA--DEDLIPQR 548 Query: 519 PITVVISNRGWIRSLKSHSVDL--------SALHFKEGDSLKIALHAHTTDRILLLSTDG 570 + V +++ G+I++ + A K+ D ++ A+T D ++ + G Sbjct: 549 EMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDYLMCFTNLG 608 Query: 571 KA-----YTLPAGNLLS-GRGHGEAIQL 592 K Y LP G S GR IQL Sbjct: 609 KCHWIKVYKLPEGGRNSRGRPINNVIQL 636 >gi|293365613|ref|ZP_06612322.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus oralis ATCC 35037] gi|291315981|gb|EFE56425.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus oralis ATCC 35037] Length = 826 Score = 372 bits (956), Expect = e-101, Method: Compositional matrix adjust. Identities = 227/709 (32%), Positives = 399/709 (56%), Gaps = 33/709 (4%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 N++ +SL + ER+ Y+ I++RA+PD+RDG KPV RRI+++M++ G F +++KS Sbjct: 3 NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDGNTFDKSYRKS 62 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 A+ VG ++G HPHGD S+YD++VR++Q + R L+ GN G++DGD AA RYTEAR Sbjct: 63 AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 ++++A +LQ +++ V F +++ + EP V P+ FPNLL NG++GI+ G AT IP HN Sbjct: 123 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 182 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 + E+ +A + +ID+P ++KL+E++ GPDFPTGGII + R+ I ++Y G+G VR++ Sbjct: 183 LAEVIDATVYMIDHPTAKVDKLMEFLPGPDFPTGGII-QGRDEIKKAYETGKGRVVVRSK 241 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315 +E++ G IV+TEIPY++ K+ L++KI ++ + ++ + ++RDES D + Sbjct: 242 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 301 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 + + +L++ +F +D++ + NM + P+ + + IL ++AHRREV+ R Sbjct: 302 LKKDANTELVLNYLFKYTDLQINYNFNMVAID-NFTPRQVGIVPILSSYIAHRREVILAR 360 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432 S F + ++R+ I++GL+ +DE+IA+IR N+ K + + TE Q +AI+ Sbjct: 361 SRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYEFTEEQAEAIV 420 Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492 L+L L + ++ E L + + +++ + +N + E+REVK+ F+ Sbjct: 421 TLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP--- 477 Query: 493 GRRRTTFCEVSRA---DKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FK 546 R +T + ++A D A+L I +E V ++ G+I+ S S L + Sbjct: 478 --RLSTLEDTAKAIEIDTASL----IAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKR 531 Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIV 603 + D L A TT +L+ +T G P L R GE + Q + + N++I+ Sbjct: 532 DDDRLIFVQSAKTTQHLLMFTTLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEIL 591 Query: 604 TAFV---YDSTCKLLVVSSKGNAFIVEESEIIA-NTRKGKT--FLKVSSE-EKMKLVVKV 656 A V +D V + G VE E T K K+ + K+ E +++ V + Sbjct: 592 YAEVVDQFDDATTYFVATRLGQIKRVERKEFSPWRTYKSKSVKYAKLKDETDQIVAVAPI 651 Query: 657 TGDHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYK--DGGISDVIC 702 D V ++ +N L F+I+++P + ++ GV+ + K D + IC Sbjct: 652 KLDDVLLISQNGYALRFNIEEVPVVGAKATGVKAMNLKADDALQAAFIC 700 >gi|30681440|ref|NP_187680.2| DNA gyrase subunit A family protein [Arabidopsis thaliana] gi|110808536|sp|Q9CAF6|GYRA_ARATH RecName: Full=Probable DNA gyrase subunit A, chloroplastic/mitochondrial; Flags: Precursor gi|332641422|gb|AEE74943.1| DNA gyrase subunit A [Arabidopsis thaliana] Length = 950 Score = 372 bits (956), Expect = e-100, Method: Compositional matrix adjust. Identities = 242/695 (34%), Positives = 387/695 (55%), Gaps = 44/695 (6%) Query: 28 ERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLH 87 E Y++YALS + RA+PD+RDG KPVHRRI+ AM E+G+ +KK AR+VGEV+GK H Sbjct: 112 ESYMSYALSVLLGRALPDVRDGLKPVHRRILFAMHELGMSSKKPYKKCARVVGEVLGKFH 171 Query: 88 PHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE-LILQG 146 PHGD +VYDSLVR+AQ F R PLI G GNFG+ID D AA RYTE R+ +AE ++L Sbjct: 172 PHGDTAVYDSLVRMAQSFSLRCPLIQGHGNFGSIDADPPAAMRYTECRLDPLAEAVLLSD 231 Query: 147 VDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALAL 206 +D+D VDF ++ EP V P++ P LL NG SGIAVGMAT+IP HN+ E+ + AL Sbjct: 232 LDQDTVDFVANFDNSQKEPAVLPARLPALLLNGASGIAVGMATNIPPHNLGELVDVLCAL 291 Query: 207 IDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSW 266 I NPE ++++LLEY+ PDFPTGGII+ ++++YR GRG VR + VE + + Sbjct: 292 IHNPEATLQELLEYMPAPDFPTGGIIM-GNLGVLDAYRTGRGRVVVRGKAEVELLDPKTK 350 Query: 267 --CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDL 324 +++TEIPYQ K+ L++KIAEL+ K + + DIRDES + V+ R DP L Sbjct: 351 RNAVIITEIPYQTNKATLVQKIAELVENKTLEGISDIRDESDRNGMRVVIELKRGGDPAL 410 Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384 ++ +++ + +++ F NM + G P++M L +L+ ++ R V+ RR+ F++ Sbjct: 411 VLNNLYRHTALQSSFSCNMVGICDGE-PKLMGLKELLQAFIDFRCSVVERRARFKLSHAQ 469 Query: 385 RRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLTENQVDAILNLRLRSLRK 441 +R I++G+++ N+DE+I +I + S + L+E Q +AIL + LR L Sbjct: 470 QRKHIIEGIVVGLDNVDEVIELITKASSHSSATAALQSEYGLSEKQAEAILEITLRRLTA 529 Query: 442 LEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCE 501 LE + E +L + K++ LL++ I E E+K+ FS RR+ + Sbjct: 530 LERKKFTDESSSLTEQITKLEQLLSTRTNILKLIEQEAIELKDRFSSP-----RRSMLED 584 Query: 502 VSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL--------SALHFKEGDSLKI 553 D + +I E + + +S +G+++ +K+ + +L S + D++ Sbjct: 585 SDSGDLEDID--VIPNEEMLMAVSEKGYVKRMKADTFNLQHRGTIGKSVGKLRVDDAMSD 642 Query: 554 ALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI-----V 603 L H D +L S G +AY +P S G + ++ ++ + + V Sbjct: 643 FLVCHAHDHVLFFSDRGIVYSTRAYKIPE---CSRNAAGTPLVQILSMSEGERVTSIVPV 699 Query: 604 TAFVYDSTCKLLVVSSKGNAFIVEES-EIIANTRK-GKTFLKVSSEEKMKLVVKVTGDH- 660 + F D +L V N I + S ++ + R G ++++S +++K V + D Sbjct: 700 SEFAEDRYLLMLTV----NGCIKKVSLKLFSGIRSTGIIAIQLNSGDELKWVRCCSSDDL 755 Query: 661 VAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKD 694 VA+ +N + + + D + +SR KGV K+ Sbjct: 756 VAMASQNGMVALSTCDGVRTLSRNTKGVTAMRLKN 790 >gi|332705056|ref|ZP_08425141.1| DNA gyrase subunit A [Lyngbya majuscula 3L] gi|332356233|gb|EGJ35688.1| DNA gyrase subunit A [Lyngbya majuscula 3L] Length = 846 Score = 372 bits (956), Expect = e-100, Method: Compositional matrix adjust. Identities = 245/706 (34%), Positives = 388/706 (54%), Gaps = 51/706 (7%) Query: 35 LSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSV 94 +S I RA+PD RDG KPVHRRI++AM E+GL F+K AR+VGEV+GK HPHGD +V Sbjct: 1 MSVIVGRALPDARDGLKPVHRRILYAMHELGLSPERPFRKCARVVGEVLGKYHPHGDTAV 60 Query: 95 YDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVA-ELILQGVDEDAVD 153 YD+LVR+AQ F R PLI+G GNFG++D D AA RYTE R+ +A +L+ ++ + VD Sbjct: 61 YDALVRMAQDFSMRSPLINGHGNFGSVDNDPPAAMRYTECRLQAIATNALLRDIESETVD 120 Query: 154 FRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEIS 213 F D ++ EP V P++ P LL NG+SGIAVGMAT+IP HN+ E+ + +A+I NPEI+ Sbjct: 121 FVDNFDGSQQEPTVLPARIPQLLLNGSSGIAVGMATNIPPHNLGELVDGLVAVIHNPEIT 180 Query: 214 IEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVG-RG---SWCIV 269 ++L YI GPDFPTG I+ + I ++Y GRG +R +E +G RG I+ Sbjct: 181 DKELRRYIPGPDFPTGAQILGT-SGIKDAYTSGRGSITMRGVAEIETIGQRGRPDKEAII 239 Query: 270 VTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESI 329 +TE+PYQ K+ LIEKIAEL+ KRI + DIRDES + ++ R P +++ ++ Sbjct: 240 ITELPYQTNKASLIEKIAELVNDKRIDGISDIRDESDRNGMRIVIELKRDAYPKVVLNNL 299 Query: 330 FMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEI 389 + + ++T F NM L +G PQ++ + L +L R E + RR+ ++++ + R + Sbjct: 300 YKQTPLQTNFGANMLAL-VGNEPQLLTIKQFLNVFLDFRIETITRRTQYQLRKAEERDHL 358 Query: 390 LKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQ 446 L+GLLIA ++D +IA+IR + + +V+ FSL+E Q DAIL ++LR L LE + Sbjct: 359 LQGLLIALDSLDAVIAVIRGAADTTTARGQLVTEFSLSEAQADAILQMQLRRLTALEAQK 418 Query: 447 IKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRAD 506 I++E + L + +L + I E +++K+ F+ RRT +V Sbjct: 419 IQAEHEELQVRIADLRDILARRSRILEIIETEAQQLKQNFATP-----RRTQIQQVEGEL 473 Query: 507 KATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAH 558 T +I E ++++ +G+I R+ + +A K+ D ++ Sbjct: 474 DDT---DLIANEKAVILLTEQGYIKRMPVDEFRAQARATRGKAAARIKDDDEVEHFFTCC 530 Query: 559 TTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDI-----VTAFVYDST 611 D IL S G Y+L A + +S G I ++ + H + I V+ F D Sbjct: 531 DHDSILFFSDRGVVYSLRAYQIPAVSRTARGVPIVQMLPIPHEEKITSIVPVSEFTDDEY 590 Query: 612 CKLLVVSSKG-------NAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVV 664 L++++ KG +AF S+I AN G + + ++++ V++ + ++ Sbjct: 591 --LVMLTHKGYIKKTALDAF----SKIRAN---GLIAISLGEGDQLRWVLRAREEDSIII 641 Query: 665 GENRKLLI-FSIDQIPEMSRGKGVR-LQSYKDGGISDVICFKICEG 708 G + I F D G+ R +++ K G ++I I G Sbjct: 642 GSRHGMAIHFKCDNDQLRPLGRATRGVKAMKLKGDDELIGMDILSG 687 >gi|168205876|ref|ZP_02631881.1| DNA topoisomerase, GyrA/ParC subunit family [Clostridium perfringens E str. JGS1987] gi|170662606|gb|EDT15289.1| DNA topoisomerase, GyrA/ParC subunit family [Clostridium perfringens E str. JGS1987] Length = 979 Score = 372 bits (956), Expect = e-100, Method: Compositional matrix adjust. Identities = 212/599 (35%), Positives = 356/599 (59%), Gaps = 27/599 (4%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 + N+ + L + + YL YA+ K+RA+PD+RDG KPVHRRI++ + + Sbjct: 11 DNNIIRMPLEEVMPDNYLPYAVEVAKDRALPDVRDGLKPVHRRILYGAYMLKAFPDKPYY 70 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSARIVG+++GK HPHGD SVYD++V LAQ F R PLI G GN+G+IDGD AAA RYTE Sbjct: 71 KSARIVGDILGKYHPHGDSSVYDAMVILAQNFSTRAPLIDGHGNWGSIDGDGAAAMRYTE 130 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 AR++ ++ +L+ ++++ VD Y++ + EP V P+++PNLL NGT GIAVG++T+IP Sbjct: 131 ARLSSISMEMLRDIEKNVVDMVPNYSDSEMEPKVLPARYPNLLVNGTFGIAVGLSTNIPP 190 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN++E+ + LA IDN EI+ +L+ YI GPD PTGG+++ ++++ +Y G G +R Sbjct: 191 HNLREVIDGTLAYIDNNEITTRELMNYIKGPDLPTGGVLI-GEKTLLSAYETGEGKVTLR 249 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR----IPLLEDIRDESAED- 308 A+ +E + G IV+TE PY+ K+R+++ I+++ KR + + DIRDES Sbjct: 250 AKAKIETLENGRLGIVITEFPYRRNKARILQTISDMTGDKRHAKALDGIVDIRDESDRTG 309 Query: 309 VRIVLFPKNRSLDPDL---LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365 +R V+ K +++D D+ +++ ++ +D++ NM L+ G+ P+ M L I+ ++ Sbjct: 310 IRAVIEFK-KAVDHDMADKVLKYLYKKTDLQGNISFNMVALADGK-PETMGLKTIISHYV 367 Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFS 422 H+++V+ RR+ ++ ++R I++G + A +DE+IA IR K +VS+F Sbjct: 368 NHQKDVVTRRTKRELEVAEKRFHIVEGFIKAIGIMDEVIATIRASKSKKDAHENLVSKFG 427 Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482 T+ Q +AIL L L L LE + E L + + + +L + I E++EV Sbjct: 428 FTDLQAEAILELMLYRLTGLEIKVFQKEHKELSKKIKALRKILENESVLLGVIKDELKEV 487 Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--LKSH---S 537 E++ RRT E K L++ +I E + V +SN G+I+ LK++ + Sbjct: 488 AEVYG-----DERRTALIEDESEAKIDLEE-LIVAEDVMVTLSNEGFIKKIPLKTYNRSN 541 Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLI 594 VD + + ++EGD LK + ++T D + + + G Y + +++ + GE ++ LI Sbjct: 542 VDENEIEYREGDYLKFLIKSNTKDTLAIFTDKGTVYQIKCNSVVDKKWKDKGERLEDLI 600 >gi|168186942|ref|ZP_02621577.1| DNA gyrase subunit A [Clostridium botulinum C str. Eklund] gi|169295241|gb|EDS77374.1| DNA gyrase subunit A [Clostridium botulinum C str. Eklund] Length = 970 Score = 372 bits (956), Expect = e-100, Method: Compositional matrix adjust. Identities = 209/589 (35%), Positives = 341/589 (57%), Gaps = 25/589 (4%) Query: 8 NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67 N N + N+ S+ + + YL YA+ KERA+PD+RDG KPVHRRI++ ++ Sbjct: 5 NVNIPKDNNIIKTSISEVMPDNYLPYAVEVAKERALPDVRDGLKPVHRRILYGAYKLKAT 64 Query: 68 FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAA 127 + KSARIVG+++GK HPHGD SVYD++V LAQ F R PLI G GN+G+IDGDSAA Sbjct: 65 PDKPYYKSARIVGDILGKYHPHGDTSVYDAMVILAQNFTTRIPLIDGHGNWGSIDGDSAA 124 Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187 A RYTEAR+T A +L+ +D+D VD + Y++ + EP V P++FPNLL NG GIAVG+ Sbjct: 125 AMRYTEARLTNAATEMLKDIDKDVVDMVNNYSDTELEPKVLPARFPNLLVNGAFGIAVGL 184 Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247 AT+IP HN++E + +A I+N IS ++L+ YI GPD PTGGI++ ++++ +Y G Sbjct: 185 ATNIPPHNLKETIDGCIAYINNNNISTKELMNYIKGPDLPTGGILI-GEKALLSAYEKGE 243 Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR----IPLLEDIRD 303 G +RA+ +E++ + IV+ E PY+ KS++++ I+E+ K+ + + DIRD Sbjct: 244 GRVTLRAKTNIEKLENDRYGIVIKEFPYRKNKSKMLQSISEMTADKKHSKALDSIYDIRD 303 Query: 304 ESAED-VRIVLFPKNRSLD---PDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359 ES + +R V+ K +S D + +++ +F ++++ NM ++ G+ P+ + L Sbjct: 304 ESDRNGIRAVIELK-KSADMEEAERVLKYLFKKTELQCNLSFNMVAIAEGK-PKTLGLKS 361 Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV--- 416 ILK ++ H+++V+ RR+ ++ +R I++G + A +DEI+ IR K Sbjct: 362 ILKYYVEHQKDVITRRTKKELEIAKKRFHIVEGFIKAIDIMDEILKTIRASKSKKDSEEN 421 Query: 417 MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476 +V +F + Q +AI+ L L L LE + E L + +LNS K+ + I Sbjct: 422 LVGKFGFSREQAEAIVELMLYKLTGLEIKVFEKEYRELQRRINALTKILNSEKELFKVIK 481 Query: 477 CEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL--- 533 E+ EVKE + RRT K ++ +++ E + + +SN G+I+ + Sbjct: 482 KELNEVKENYG-----DERRTNIIHDDEKAKIDIEDIIVD-ENVVITVSNDGYIKRVSEK 535 Query: 534 --KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL 580 K + + + ++EGD K L +T D +++ + G Y L N+ Sbjct: 536 YYKRINPKIEDIEYREGDFNKFILEGNTKDNLIMFTDAGNLYQLRIVNI 584 >gi|121635089|ref|YP_975334.1| DNA gyrase subunit A [Neisseria meningitidis FAM18] gi|120866795|emb|CAM10548.1| DNA gyrase subunit A [Neisseria meningitidis FAM18] gi|325132422|gb|EGC55115.1| DNA gyrase, A subunit [Neisseria meningitidis M6190] gi|325138411|gb|EGC60979.1| DNA gyrase, A subunit [Neisseria meningitidis ES14902] gi|325142582|gb|EGC64977.1| DNA gyrase, A subunit [Neisseria meningitidis 961-5945] gi|325198529|gb|ADY93985.1| DNA gyrase, A subunit [Neisseria meningitidis G2136] Length = 916 Score = 372 bits (956), Expect = e-100, Method: Compositional matrix adjust. Identities = 229/628 (36%), Positives = 353/628 (56%), Gaps = 65/628 (10%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 VSL + + YL YA+S I RA+PD+RDG KPVHRR+++AM E+ ++ AA+KKSARIV Sbjct: 19 VSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIV 78 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGD +VYD++VR+AQ F RY LI GQGNFG++DG +AAA RYTE RM ++ Sbjct: 79 GDVIGKYHPHGDTAVYDTIVRMAQNFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMAKI 138 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 + +L ++E+ V+F Y+ + EP+V P++FP LL NG+SGIAVGMAT+IP HN+ + Sbjct: 139 SHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGSSGIAVGMATNIPPHNLSDT 198 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 A L L+D P+ I++L++ I PDFPTG I + E Y+ GRG +R + +E Sbjct: 199 VNACLRLLDAPDTEIDELIDIIQAPDFPTGATIY-GLSGVREGYKTGRGRVVMRGKTHIE 257 Query: 260 EVGRGS--WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317 +GR IV+ EIPYQV K++L+EKI +L+ K + + ++RDES + V+ Sbjct: 258 PIGRNGEREAIVIDEIPYQVNKAKLVEKIGDLVREKTLEGISELRDESDKSGMRVVIELK 317 Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377 R+ + ++++ ++ L+ ++ F +NM VL G+ P+++ L IL E+L HRREV+ RR+ Sbjct: 318 RNENAEVVLNQLYKLTPLQDSFGINMVVLVDGQ-PRLLNLKQILSEFLRHRREVVTRRTL 376 Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN-----EDKPKPV-----------MVSR- 420 FR++ I +G +A NIDEII +I+ E K K + M++R Sbjct: 377 FRLKKARHEGHIAEGKAVALSNIDEIIKLIKESPNAAEAKDKLLAHPWRSSLVEEMLTRS 436 Query: 421 ----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458 + L+E Q DAIL + LR+L L++ +I NL+ + Sbjct: 437 GLDLEMMRPEGLAANIGLKEQGYYLSEIQADAILRMSLRNLTGLDQEEIVESYKNLMGKI 496 Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518 +L+ ++ I E+ E+K T+ G R + D A + +I + Sbjct: 497 IDFVDILSKPERITQIIRDELEEIK------TNYGDERRSEINPFGGDIA--DEDLIPQR 548 Query: 519 PITVVISNRGWIRSLKSHSVDL--------SALHFKEGDSLKIALHAHTTDRILLLSTDG 570 + V +++ G+I++ + A K+ D ++ A+T D ++ + G Sbjct: 549 EMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDYLMCFTNLG 608 Query: 571 KA-----YTLPAGNLLS-GRGHGEAIQL 592 K Y LP G S GR IQL Sbjct: 609 KCHWIKVYKLPEGGRNSRGRPINNVIQL 636 >gi|261380731|ref|ZP_05985304.1| DNA gyrase, A subunit [Neisseria subflava NJ9703] gi|284796448|gb|EFC51795.1| DNA gyrase, A subunit [Neisseria subflava NJ9703] Length = 923 Score = 372 bits (956), Expect = e-100, Method: Compositional matrix adjust. Identities = 226/628 (35%), Positives = 352/628 (56%), Gaps = 65/628 (10%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 VSL + + YL YA+S I RA+PD+RDG KPVHRR+++AM E+ ++ +A+KKSARIV Sbjct: 19 VSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELKNNWNSAYKKSARIV 78 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGD +VYD++VR+AQ F RY LI GQGNFG++DG +AAA RYTE RM ++ Sbjct: 79 GDVIGKYHPHGDTAVYDTIVRMAQDFSMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMEKI 138 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 + +L ++E+ V+F Y+ + EP+V P++FP LL NG+SGIAVGMAT+IP HN+ + Sbjct: 139 SHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPALLVNGSSGIAVGMATNIPPHNLGDT 198 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 A L L+D PE I++L+ I PDFPTG I + E Y+ GRG +R + +E Sbjct: 199 INACLRLLDEPETEIDELINIIQAPDFPTGATIY-GLSGVREGYKTGRGRVVMRGKTHIE 257 Query: 260 EVGRGS--WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317 +G+ IV+ EIPYQV K++L+EKI EL+ K + + D+RDES + V+ Sbjct: 258 PIGKNGEREAIVIDEIPYQVNKAKLVEKIGELVREKTLEGVSDLRDESDKSGMRVVIELK 317 Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377 R+ + ++++ ++ ++ ++ F +NM L G+ P+++ L IL E+L HRREV+ RR+ Sbjct: 318 RNENAEVVLNQLYKMTQLQDSFGINMVALVDGQ-PRLLNLKQILSEFLRHRREVVTRRTL 376 Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSR-------------- 420 FR++ I +G +A NIDEII +I+ N + K ++SR Sbjct: 377 FRLKKARHEGHIAEGKAVALSNIDEIIRLIKESANAPEAKEKLLSRPWRSSLVEDMLSRT 436 Query: 421 ----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458 + L+E Q DAIL + LR+L L++ +I E NL+++ Sbjct: 437 DLDLHMMRPEGLPENLGLHSQGYYLSELQADAILRMSLRNLTGLDQEEIVGEYKNLMSKI 496 Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518 +L+ ++ I E+ ++K F RR+ E++ + +I + Sbjct: 497 IDFVDILSKPERVTQIIREELADIKANFGDE-----RRS---EINPFGGDIADEDLIPQR 548 Query: 519 PITVVISNRGWIRSLKSHSVDL--------SALHFKEGDSLKIALHAHTTDRILLLSTDG 570 + V +++ G+I++ + A K+ D ++ A+T D ++ + G Sbjct: 549 EMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDYLMCFTNLG 608 Query: 571 KA-----YTLPAGNLLS-GRGHGEAIQL 592 K Y LP G S GR IQL Sbjct: 609 KCHWIKVYKLPEGGRNSRGRPINNVIQL 636 >gi|254672258|emb|CBA05271.1| DNA gyrase subunit A [Neisseria meningitidis alpha275] gi|325201905|gb|ADY97359.1| DNA gyrase, A subunit [Neisseria meningitidis M01-240149] gi|325208343|gb|ADZ03795.1| DNA gyrase, A subunit [Neisseria meningitidis NZ-05/33] Length = 916 Score = 372 bits (956), Expect = e-100, Method: Compositional matrix adjust. Identities = 228/630 (36%), Positives = 352/630 (55%), Gaps = 69/630 (10%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 VSL + + YL YA+S I RA+PD+RDG KPVHRR+++AM E+ ++ AA+KKSARIV Sbjct: 19 VSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIV 78 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGD +VYD++VR+AQ F RY LI GQGNFG++DG +AAA RYTE RM ++ Sbjct: 79 GDVIGKYHPHGDTAVYDTIVRMAQNFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMAKI 138 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 + +L ++E+ V+F Y+ + EP+V P++FP LL NG+SGIAVGMAT+IP HN+ + Sbjct: 139 SHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGSSGIAVGMATNIPPHNLSDT 198 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 A L L+D P+ I++L++ I PDFPTG I + E Y+ GRG +R + +E Sbjct: 199 VNACLRLLDAPDTEIDELIDIIQAPDFPTGATIY-GLSGVREGYKTGRGRVVMRGKTHIE 257 Query: 260 EVGRGS--WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317 +GR IV+ EIPYQV K++L+EKI +L+ K + + ++RDES + V+ Sbjct: 258 PIGRNGEREAIVIDEIPYQVNKAKLVEKIGDLVREKTLEGISELRDESDKSGMRVVIELK 317 Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377 R+ + ++++ ++ L+ ++ F +NM VL G+ P+++ L IL E+L HRREV+ RR+ Sbjct: 318 RNENAEVVLNQLYKLTPLQDSFGINMVVLVDGQ-PRLLNLKQILSEFLRHRREVVTRRTL 376 Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------MVS 419 FR++ I +G +A NIDEII +I+ + P V M++ Sbjct: 377 FRLKKARHEGHIAEGKAVALSNIDEIIRLIK--ESPNAVEAKDKLLAHPWRSSLVEEMLT 434 Query: 420 R-----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLA 456 R + L+E Q DAIL + LR+L L++ +I NL+ Sbjct: 435 RSGLDLEMMRPEGLAANIGLKEQGYYLSEIQADAILRMSLRNLTGLDQEEIVESYKNLMG 494 Query: 457 EKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE 516 + +L+ ++ I E+ E+K T+ G R + D A + +I Sbjct: 495 KIIDFVDILSKPERITQIIRDELEEIK------TNYGDERRSEINPFGGDIA--DEDLIP 546 Query: 517 KEPITVVISNRGWIRSLKSHSVDL--------SALHFKEGDSLKIALHAHTTDRILLLST 568 + + V +++ G+I++ + A K+ D ++ A+T D ++ + Sbjct: 547 QREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDYLMCFTN 606 Query: 569 DGKA-----YTLPAGNLLS-GRGHGEAIQL 592 GK Y LP G S GR IQL Sbjct: 607 LGKCHWIKVYKLPEGGRNSRGRPINNVIQL 636 >gi|86281831|gb|ABC90894.1| DNA gyrase subunit A protein [Rhizobium etli CFN 42] Length = 908 Score = 372 bits (956), Expect = e-100, Method: Compositional matrix adjust. Identities = 236/694 (34%), Positives = 368/694 (53%), Gaps = 63/694 (9%) Query: 35 LSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSV 94 +S I RA+PD+RDG KPVHRRI++ MSE+G+D+ + K AR+ G+V+GK HPHG+ ++ Sbjct: 1 MSVIVSRALPDVRDGLKPVHRRILYGMSELGIDWNKKYVKCARVTGDVMGKYHPHGNAAI 60 Query: 95 YDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDF 154 YD+L R+AQP+ R PLI GQGNFG++DGD AA RYTE R+ + A +L +D++ VDF Sbjct: 61 YDALARMAQPWSLRLPLIDGQGNFGSVDGDPPAAERYTECRLEKAAHSLLDDLDKETVDF 120 Query: 155 RDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISI 214 RD Y+ SEPVV P+KFPNLL NG GIAVGMAT+IP HN+ E+ + +ALI++P I + Sbjct: 121 RDNYDGTLSEPVVVPAKFPNLLVNGAGGIAVGMATNIPPHNLSEVIDGCIALINDPAIEL 180 Query: 215 EKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIP 274 +L++ I GPDFPTG I+ R I +Y GRG +R +E + I++TEIP Sbjct: 181 PELMQIIPGPDFPTGAKIL-GRAGIRSAYETGRGSVIMRGVATIEPMRGDREQIIITEIP 239 Query: 275 YQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSD 334 YQV K+ +IEK+AEL+ KRI + D+RDES V+ R + ++++ ++ + Sbjct: 240 YQVNKATMIEKMAELVREKRIEGISDLRDESDRQGYRVVIELKRDANAEVILNQLYRYTP 299 Query: 335 METRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLL 394 ++T F NM L+ G+ Q+ LD +L+ +++ R EV+ RR+ F ++ R +L GL Sbjct: 300 LQTSFGCNMVALNGGKPEQLTLLD-MLRAFVSFREEVVSRRTKFLLRKARERAHVLVGLA 358 Query: 395 IAYLNIDEIIAIIRNEDKPKP----VMVSR-------------------------FSLTE 425 IA NIDE+I +IR P+ +M R ++L+E Sbjct: 359 IAVANIDEVIRVIRQAPDPQSAREELMTRRWPAEDVESLIRLIDDPRHRINDDLTYNLSE 418 Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485 Q AIL LRL L L +I EL+ + E +L+S + + E+ V++ Sbjct: 419 EQARAILELRLARLTALGRDEIGDELNKIGEEIRDYLDILSSRVRIQTIVKDELSAVRDE 478 Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHS 537 F RRT E+ + +I +E + V +S+ G+I R+ + Sbjct: 479 FGTP-----RRT---EIVDGGLEMDDEDLIAREDMVVTVSHLGYIKRVPLTTYRAQRRGG 530 Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQL 592 S + ++ D + +T +L S+ G K + LP G S G+A+ Sbjct: 531 KGRSGMTTRDEDFVSRLFVVNTHTPVLFFSSRGIVYKEKVWRLPIGTPTS---RGKALIN 587 Query: 593 LIDLNHNQDIVTAFVYD------STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS 646 ++ L + I T ++ +++G + S+ + R GK +K+ Sbjct: 588 MLPLEPGERITTILPLPEDEASWDNLDVMFSTTRGTVRRNKLSDFVQVNRNGKIAMKLEE 647 Query: 647 EEKMKLVVKVTGDH--VAVVGENRKLLIFSIDQI 678 E L V+ D V + + + FS+D + Sbjct: 648 EGDEILSVETCTDRDDVLLTTALGQCIRFSVDDV 681 >gi|257869693|ref|ZP_05649346.1| topoisomerase IV A subunit [Enterococcus gallinarum EG2] gi|257803857|gb|EEV32679.1| topoisomerase IV A subunit [Enterococcus gallinarum EG2] Length = 820 Score = 372 bits (955), Expect = e-100, Method: Compositional matrix adjust. Identities = 208/618 (33%), Positives = 362/618 (58%), Gaps = 20/618 (3%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 N++ ++L + +R+ Y+ I+ERA+PD+RDG KPV RRI+ AM++ G + F+KS Sbjct: 6 NIQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFAMNQDGNTYDKGFRKS 65 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 A+ VG ++G HPHGD S+Y+++VR++Q + R LI GN G++DGD AA RYTEAR Sbjct: 66 AKSVGNIMGNFHPHGDSSIYEAMVRMSQDWKLRQILIEMHGNNGSMDGDPPAAMRYTEAR 125 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 +++++ +L+ +++D V+ +++ + EP V P+K+PNLL NG++GI+ G AT IP+HN Sbjct: 126 LSELSGELLKDIEKDTVELVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATEIPTHN 185 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 + E+ + + LID+P S++KL+E+I GPDFPTGGI+ + +E I ++Y GRG +R++ Sbjct: 186 LSEVIDGTIYLIDHPNASLDKLMEFIPGPDFPTGGIL-QGKEEIKKAYETGRGKVILRSK 244 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315 +E++ G IV+ EIPY+V K+ L++K+ E+ + K+I + ++RDE+ ++ Sbjct: 245 TRIEDIKGGKQQIVINEIPYEVNKANLVKKMDEIRLNKKIDGIAEVRDETDRTGLQIVVE 304 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 + + ++ +F ++++ + NM + R PQ + L IL+ ++ HRREV+ +R Sbjct: 305 LKKDANAQGILNYLFKNTELQINYNFNMVAIDEMR-PQQVGLKHILESYVKHRREVIAKR 363 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDK--PKPVMVSRFSLTENQVDAIL 432 S + ++ +R I+ GL+ A +DE+IA IR ++DK K +V + TE Q +AI+ Sbjct: 364 SRYELKKAQKRQHIVDGLMKALSILDEVIATIRSSKDKKDAKNNLVVQHGFTEEQAEAIV 423 Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492 L+L L + Q+++E L ++ +LN + I E+RE+K+ + Sbjct: 424 TLQLYRLTNTDITQLQAEAQELAETIRELTKILNEETELLKVIKKELREIKKKYHSD--- 480 Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSVDL-SALHFKEGD 549 R T E + Q ++ +E + V ++ G+++ SL+S+ L KEGD Sbjct: 481 ---RMTEIEAEIQEIKIETQVLVAQEDVVVTVTTDGYVKRSSLRSYGASKPEELGMKEGD 537 Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAI-QLLIDLNHNQDIVTAF 606 +L + A T D +LL++ G P L L + GE I Q +++L + I+ F Sbjct: 538 ALLYSGQASTLDHLLLVTNKGNVIYRPIHELPDLKWKDLGEHISQTVMNLATEETILAVF 597 Query: 607 VY---DSTCKLLVVSSKG 621 Y D +++S G Sbjct: 598 TYQELDPQKNFVLISKNG 615 >gi|157060398|gb|ABV03205.1| GyrA [Chlamydia trachomatis] Length = 435 Score = 372 bits (955), Expect = e-100, Method: Compositional matrix adjust. Identities = 199/434 (45%), Positives = 280/434 (64%), Gaps = 8/434 (1%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 EE + +L ++E YL Y++S I RA+PD RDG KP RRI++AM ++ L G + Sbjct: 5 EEIIVPKNLEEEMKESYLRYSMSVIISRALPDARDGLKPSQRRILYAMKQLNLTPGVKHR 64 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 K A+I G+ G HPHG++ +Y +LVR+AQ + RYPL+ GQGNFG+IDGD AAA RYTE Sbjct: 65 KCAKICGDTSGDYHPHGERVIYPTLVRMAQDWAMRYPLVDGQGNFGSIDGDPAAAMRYTE 124 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 AR+T A +L+ +D+D VD Y+E EPVVFPSKFPNLL NG+SGIAVGMAT+IP Sbjct: 125 ARLTHSAIFLLEDLDKDTVDMVPNYDETKYEPVVFPSKFPNLLCNGSSGIAVGMATNIPP 184 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E+ EA L ++ N + SIE +LE + GPDFPTGGII + E I +Y GRG R+R Sbjct: 185 HNLGELIEATLLVLANSQTSIEDILEVMPGPDFPTGGIICGT-EGIRSTYYTGRGKLRLR 243 Query: 254 ARWCVEE-VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRI 311 AR VEE + I++TE+PY V KSRLIE+IAELI K + + D+RDES +D +R+ Sbjct: 244 ARMHVEENSDKQRENIILTEMPYNVNKSRLIEQIAELINEKTLTGISDVRDESDKDGIRV 303 Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371 VL K + ++++ ++ +D++ F NM L +P+ M + ++ W+ HR +V Sbjct: 304 VLELK-KGESSEVVINRLYKFTDVQVTFGANMLALDKN-LPRTMNIHRMISAWIRHRMDV 361 Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQV 428 + RR+ + + + R IL+G L A +DE++ IR N++ K +V FS +E Q Sbjct: 362 IRRRTRYELNKAEARAHILEGFLKALSCMDEVVKTIRESSNKEHAKQQLVELFSFSEAQA 421 Query: 429 DAILNLRLRSLRKL 442 AIL LRL L L Sbjct: 422 LAILELRLYQLTGL 435 >gi|154508247|ref|ZP_02043889.1| hypothetical protein ACTODO_00741 [Actinomyces odontolyticus ATCC 17982] gi|153797881|gb|EDN80301.1| hypothetical protein ACTODO_00741 [Actinomyces odontolyticus ATCC 17982] Length = 867 Score = 372 bits (955), Expect = e-100, Method: Compositional matrix adjust. Identities = 225/630 (35%), Positives = 350/630 (55%), Gaps = 36/630 (5%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 E ++ V L+ ++ YL YA+S I RA+PD+RDG KPVHRR+++AM + G ++F K Sbjct: 16 ERIRQVDLQKEMQRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMYDGGYRPTSSFSK 75 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 S+R+VGEV+G HPHGD ++YD+L RL QP+ RYPL++GQGNFG AA RYTE Sbjct: 76 SSRVVGEVMGNYHPHGDAAIYDALARLVQPWSLRYPLVAGQGNFGTPGNLGPAAPRYTEC 135 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 +M +A +++ +DE+ VDF+D Y+ + EP + P++FPNLLANG+ GIAVGMAT IP H Sbjct: 136 KMAPLAMEVVRDIDEECVDFQDNYDGRNQEPTILPARFPNLLANGSEGIAVGMATRIPPH 195 Query: 195 NVQEICEAALALIDNPEISIEKLLEYII----GPDFPTGGIIVESRESIVESYRLGRGGF 250 N++E+ +++P+ S E+LLE +I GPDFPTG I+ + I ++YR GRG Sbjct: 196 NLRELARGVEWALEHPDASREELLEALIKLIPGPDFPTGATIL-GHKGIEDAYRTGRGSI 254 Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV- 309 RA VEE+ +G C+VVTE+PYQV L +KIA+L+ I + DIRDE++ Sbjct: 255 TQRAVVNVEEI-QGRQCLVVTELPYQVNPDNLADKIAQLVRDGAIGGIADIRDETSGRTG 313 Query: 310 -RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368 R+V+ K R +++ +++ + ++ F NM L G VP+ + +DG ++ W+ H+ Sbjct: 314 QRLVIVLK-RDAVAKVVLNNLYKRTSLQENFSANMLALVDG-VPRTLSIDGFIRHWINHQ 371 Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTE 425 +V+ RR+ FR++ R+ IL+G L A +DE+IA+IR D+ + ++ + Sbjct: 372 IDVIVRRTKFRLRKALERLHILEGYLKALDALDEVIALIRRSPTVDEARAGLIELLDVDA 431 Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485 Q DAIL L+LR L LE +I E L A + ++ +L ++Q I+ E+ E+ + Sbjct: 432 IQADAILALQLRRLAALERQKIMDEHAELKARVDDLNDILAKPERQRAIISAELGEIVDK 491 Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHS 537 F RRT D + +I +E + V I+ G+ RS K Sbjct: 492 FGDE-----RRTRILPF---DGEMSMEDLIPEEDVVVTITRDGFAKRTRTDNYRSQKRGG 543 Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTD------GKAYTLPAGNLLSGRGHGEAIQ 591 + + GD + TT LL T+ KAY +P G + H + Sbjct: 544 KGVRGTQLR-GDDVVEHFFVTTTHNWLLFFTNLGRVYRAKAYEIPEGGRDAKGQHVANLL 602 Query: 592 LLIDLNHNQDIVTAFVYDSTCKLLVVSSKG 621 H ++ Y+ L++ + +G Sbjct: 603 AFQPDEHIAQVLAIRTYEDADFLVLATKRG 632 >gi|332967948|gb|EGK07036.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Kingella kingae ATCC 23330] Length = 918 Score = 372 bits (955), Expect = e-100, Method: Compositional matrix adjust. Identities = 229/651 (35%), Positives = 358/651 (54%), Gaps = 69/651 (10%) Query: 7 SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66 +N +E + AVSL +++ YL YA+S I RA+PD+RDG KPVHRR+++AM E+ Sbjct: 14 ANDQQFAKETI-AVSLEDEMKKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELKN 72 Query: 67 DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126 ++ A+KKSAR+VG+VIGK HPHGD +VY ++VR+AQPF RY L+ GQGNFG++DGD+A Sbjct: 73 NWNGAYKKSARVVGDVIGKYHPHGDSAVYQTIVRMAQPFSMRYTLVDGQGNFGSVDGDAA 132 Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186 AA RYTE RM ++A +L ++ED V+F D Y+ + EP+V P++FP LL NG+ GIAVG Sbjct: 133 AAMRYTEIRMEKIAHEMLADIEEDTVNFGDNYDGSEREPLVLPTRFPALLVNGSEGIAVG 192 Query: 187 MATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLG 246 MATSIP HN+++ L L+ PE I +L++ I PDFPTG I I Y G Sbjct: 193 MATSIPPHNLRDTLAGCLKLLREPETDINELIDIIKAPDFPTGATIY-GLTGIRAGYHTG 251 Query: 247 RGGFRVRARWCVEEVGRGS--WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDE 304 RG +R++ +E +G+ I+V EIPYQV KS+L+EKI +L+ K I + ++RDE Sbjct: 252 RGRVVIRSKTHIEPIGKNGEREAIIVDEIPYQVNKSKLVEKIGDLVRDKAIEGIAELRDE 311 Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364 S +D ++ R+ + ++++ ++ L+ ++ F +NM L G+ P+++ L IL E+ Sbjct: 312 SDKDGTRIVIELKRNENAEVILNQLYKLTQLQDTFGINMVALVDGQ-PRLLNLKQILSEF 370 Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV-------- 416 L HRREV+ RR+ FR++ I +G +A NIDE+IA+I+ + Sbjct: 371 LRHRREVVTRRTLFRLKKARAEGHIAEGKAVALSNIDEMIALIKQSADVETAREALLGRA 430 Query: 417 --------MVSR-----------------------FSLTENQVDAILNLRLRSLRKLEEY 445 M+SR + L++ Q AIL + LR+L L++ Sbjct: 431 WQSALVSEMLSRSDLDLSMARPEWLPENRGLQADGYWLSDEQARAILRMSLRNLTGLDQD 490 Query: 446 QIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG-RRRTTFCEVSR 504 +I E +L+A + +L + ++ QI + E+ T G R++ V Sbjct: 491 EIVKEYKDLMAVIVDLLDIL-AKPERVRQIIDD-----ELVVMQTQFGDERKSEINAVGG 544 Query: 505 ADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL--------SALHFKEGDSLKIALH 556 D A + +I + V +++ G+I++ + A K+ D ++ Sbjct: 545 GDIA--DEDLIPPREMVVTLTHGGYIKTQPTSDYQAQKRGGRGKQAAATKDEDFIETLFV 602 Query: 557 AHTTDRILLLSTDGKA-----YTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602 A+T D ++ + GK Y LP G S G I +I L N+ + Sbjct: 603 ANTHDYLMCFTNLGKCHWIKVYRLPEGGRNS---RGRPINNVIQLEENEKV 650 >gi|329940025|ref|ZP_08289307.1| DNA topoisomerase IV subunit A [Streptomyces griseoaurantiacus M045] gi|329300851|gb|EGG44747.1| DNA topoisomerase IV subunit A [Streptomyces griseoaurantiacus M045] Length = 817 Score = 372 bits (955), Expect = e-100, Method: Compositional matrix adjust. Identities = 210/523 (40%), Positives = 320/523 (61%), Gaps = 16/523 (3%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 EE + + + ++ +L YA S I RA+PD RDG KPVHRRI++ M+EMGL + Sbjct: 16 EERILDIDVVDEMQGSFLEYAYSVIYSRALPDARDGLKPVHRRIVYQMNEMGLRPDRGYV 75 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYT 132 K AR+VGEV+GKLHPHGD S+YD+LVR+AQPF R PL+ G GNFG++ + D AA RYT Sbjct: 76 KCARVVGEVMGKLHPHGDASIYDALVRMAQPFSMRVPLVDGHGNFGSLGNDDPPAAMRYT 135 Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192 E RM + L+ + ++ED VDF Y+ ++ EPV P+ FPNLL NG SGIAVGMAT++P Sbjct: 136 ECRMAEATSLMTESIEEDTVDFGPNYDGQEQEPVALPAAFPNLLVNGASGIAVGMATNMP 195 Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252 HN++E+ AA LI P ++ L++++ GPD PTGG IV I ++Y GRG F++ Sbjct: 196 PHNLREVIAAARHLIRYPNADLDALMKHVPGPDLPTGGRIV-GLSGIRDAYASGRGTFKI 254 Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD--ESAEDVR 310 RA ++ V +VVTE+P+ V ++I KI +L+ AK+I + D++D + +R Sbjct: 255 RATVEIDTVTARRKGLVVTELPFAVGPEKVISKIKDLVGAKKIQGIADVKDLTDREHGLR 314 Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370 +V+ KN P+ ++E ++ L+ ME F +N L G+ P + L +L+ +L HR + Sbjct: 315 LVIEIKN-GFVPEAVLEQLYKLTAMEESFGINNVALVDGQ-PLTLGLKELLEVYLDHRFD 372 Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQ 427 V+ RRS FR R+ +++GLL A ++IDE+I +IR N + K ++ RF+L++ Q Sbjct: 373 VVRRRSEFRRGKRRDRLHLVEGLLTALVDIDEVIRLIRSSENSAQAKERLIERFALSDVQ 432 Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487 IL+ LR L K + +++SE + L AE ++ +L+S + ++ E+ V + F Sbjct: 433 TQYILDTPLRRLTKFDRIELESEKERLNAEIAELTRILDSDAELRKLVSAELAAVSKKF- 491 Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI 530 TD RRT E S A A Q + +P V++S+ G + Sbjct: 492 -GTD---RRTVLLESSGAPAAVPLQ--VADDPCRVLLSSTGLL 528 >gi|320104794|ref|YP_004180385.1| DNA topoisomerase [Isosphaera pallida ATCC 43644] gi|319752076|gb|ADV63836.1| DNA topoisomerase (ATP-hydrolyzing) [Isosphaera pallida ATCC 43644] Length = 906 Score = 372 bits (955), Expect = e-100, Method: Compositional matrix adjust. Identities = 253/736 (34%), Positives = 374/736 (50%), Gaps = 83/736 (11%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM-SEMGLDFGAAFK 73 E V+ VSL A RYL YALS I RA+PD+RDG KPV RRI++AM +++ F Sbjct: 27 EVVEEVSLAEATRSRYLNYALSVITSRALPDVRDGLKPVQRRILYAMWADLKAGATGRFV 86 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSA +VGEV+ HPHGDQS+YD+LVR+AQ F R PLI G GNFG+IDGD AA RYTE Sbjct: 87 KSAAVVGEVMKSYHPHGDQSIYDALVRMAQDFSLRCPLIEGYGNFGSIDGDPPAAMRYTE 146 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 AR+T AE +L + E V+FR Y EPVV P+++PNLL NG SGIAVGMAT+IP Sbjct: 147 ARLTAAAEELLVELREQTVEFRANYAATTREPVVLPARWPNLLVNGASGIAVGMATTIPP 206 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN++E+C A +AL+DNPEI+I+KL ++ GPDFPTGG+++ S E + Y G G ++R Sbjct: 207 HNLKEVCNALIALLDNPEITIDKLHRHLPGPDFPTGGVVLNSAEDLRGIYANGHGTIKLR 266 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313 W E +V+T IPY V+K L+ KI ELI ++P L +++D S E +RIVL Sbjct: 267 GTW--EPHPERKEAVVITSIPYGVEKDDLVAKIGELIGKGQVPQLVNVKDLSDEAIRIVL 324 Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVP-------------------QV 354 + + + M ++ + ++ +NM L + +P ++ Sbjct: 325 DLRP-GANAEAAMAYLYKNTSLQINHHVNMTCL-LPALPNQRVGDNADATAVRATLADEL 382 Query: 355 MPLDGILKEW-------------------------------------LAH----RREVLF 373 P D EW L+H R EV+ Sbjct: 383 EPFDLDESEWDADAAASDPASTTLAAGLDQGEERSASVPERLDLKTMLSHFLDFRMEVVI 442 Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQVDA 430 R+ ++ + RR+ IL+G I + +DE I +IR + P + +RF L+ Q DA Sbjct: 443 RKLRHELRQVRRRIHILEGFEIVFNRLDEAIRLIRASNGKADAAPKLATRFGLSALQADA 502 Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490 IL +L L KLE +I EL A E++ LL + I +++ + + + Sbjct: 503 ILETKLYRLGKLEIDEILRELAERRARAEELRRLLGDEAARKGLIRDDLKRIAKTY---- 558 Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDS 550 G R T E + ++ I E V+++ GWI+ +S + D+ ++ ++GD Sbjct: 559 --GTPRRTRIEGPAPEVEFREEDYIVDEDAWVIVTRDGWIKRQRSFT-DIESIRVRDGDR 615 Query: 551 LKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDS 610 + A + +L++ G AYT +L+ GHGE I L L N+ IV +D Sbjct: 616 VGWLFRARARRTLTVLTSRGMAYTTRVHDLVMTTGHGEPISKLFSLEDNERIVGVVCHDP 675 Query: 611 TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKL 670 C + +A + ++A G+ +S+ + VV VT K Sbjct: 676 RCLPVHADPADHAAPKRQGVLLATAASGEESSSDNSQPQPPYVVVVTA--------GGKA 727 Query: 671 LIFSIDQIPEMSRGKG 686 L FS+ + +S KG Sbjct: 728 LRFSLAALAAVSTRKG 743 >gi|59801057|ref|YP_207769.1| DNA gyrase subunit A [Neisseria gonorrhoeae FA 1090] gi|240080519|ref|ZP_04725062.1| DNA gyrase subunit A [Neisseria gonorrhoeae FA19] gi|240118167|ref|ZP_04732229.1| DNA gyrase subunit A [Neisseria gonorrhoeae PID1] gi|240123715|ref|ZP_04736671.1| DNA gyrase subunit A [Neisseria gonorrhoeae PID332] gi|268596652|ref|ZP_06130819.1| DNA gyrase subunit A [Neisseria gonorrhoeae FA19] gi|268603883|ref|ZP_06138050.1| DNA gyrase subunit A [Neisseria gonorrhoeae PID1] gi|268682346|ref|ZP_06149208.1| DNA gyrase subunit A [Neisseria gonorrhoeae PID332] gi|293398920|ref|ZP_06643085.1| DNA gyrase, A subunit [Neisseria gonorrhoeae F62] gi|59717952|gb|AAW89357.1| DNA gyrase subunit A [Neisseria gonorrhoeae FA 1090] gi|268550440|gb|EEZ45459.1| DNA gyrase subunit A [Neisseria gonorrhoeae FA19] gi|268588014|gb|EEZ52690.1| DNA gyrase subunit A [Neisseria gonorrhoeae PID1] gi|268622630|gb|EEZ55030.1| DNA gyrase subunit A [Neisseria gonorrhoeae PID332] gi|291610334|gb|EFF39444.1| DNA gyrase, A subunit [Neisseria gonorrhoeae F62] Length = 916 Score = 372 bits (955), Expect = e-100, Method: Compositional matrix adjust. Identities = 226/628 (35%), Positives = 352/628 (56%), Gaps = 65/628 (10%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 VSL + + YL YA+S I RA+PD+RDG KPVHRR+++AM E+ ++ AA+KKSARIV Sbjct: 19 VSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIV 78 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGD +VYD++VR+AQ F RY LI GQGNFG++DG +AAA RYTE RM ++ Sbjct: 79 GDVIGKYHPHGDSAVYDTIVRMAQNFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMAKI 138 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 + +L ++E+ V+F Y+ + EP+V P++FP LL NG+SGIAVGMAT+IP HN+ + Sbjct: 139 SHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGSSGIAVGMATNIPPHNLTDT 198 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 A L L+D P+ I++L++ I PDFPTG I + E Y+ GRG +R + +E Sbjct: 199 INACLRLLDEPKTEIDELIDIIQAPDFPTGATIY-GLGGVREGYKTGRGRVVIRGKTHIE 257 Query: 260 EVGRGS--WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317 +G+ IV+ EIPYQV K++L+EKI +L+ K + + ++RDES + V+ Sbjct: 258 PIGKNGEREAIVIDEIPYQVNKAKLVEKIGDLVREKTLEGISELRDESDKSGMRVVIELK 317 Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377 R+ + ++++ ++ L+ ++ F +NM VL G+ P+++ L IL E+L HRREV+ RR+ Sbjct: 318 RNENAEVVLNQLYKLTPLQDSFGINMVVLVDGQ-PRLLNLKQILSEFLRHRREVVTRRTL 376 Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSR-------------- 420 FR++ I +G +A NIDEII +I+ N + K +++R Sbjct: 377 FRLKKARHEGHIAEGKAVALSNIDEIIKLIKESPNAAEAKEKLLARPWRSSLVEEMLTRS 436 Query: 421 ----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458 + L+E Q DAIL + LR+L L++ +I NL+ + Sbjct: 437 GLDLEMMRPEGLAANIGLKKQGYYLSEIQADAILRMSLRNLTGLDQKEIIESYKNLMGKI 496 Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518 +L+ ++ I E+ E+K T+ G R + D A + +I + Sbjct: 497 IDFVDILSKPERITQIIRDELEEIK------TNYGDERRSEINPFGGDIA--DEDLIPQR 548 Query: 519 PITVVISNRGWIRSLKSHSVDL--------SALHFKEGDSLKIALHAHTTDRILLLSTDG 570 + V +++ G+I++ + A K+ D ++ A+T D ++ + G Sbjct: 549 EMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDYLMCFTNLG 608 Query: 571 KA-----YTLPAGNLLS-GRGHGEAIQL 592 K Y LP G S GR IQL Sbjct: 609 KCHWIKVYKLPEGGRNSRGRPINNVIQL 636 >gi|260592374|ref|ZP_05857832.1| DNA gyrase, A subunit [Prevotella veroralis F0319] gi|260535668|gb|EEX18285.1| DNA gyrase, A subunit [Prevotella veroralis F0319] Length = 862 Score = 372 bits (955), Expect = e-100, Method: Compositional matrix adjust. Identities = 216/616 (35%), Positives = 350/616 (56%), Gaps = 27/616 (4%) Query: 6 ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65 + + T+ ++ + +++ ++ Y+ Y++S I RA+PD+RDGFKPVHRRI+ M +G Sbjct: 1 MDENQTIDQDRIMKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILFGMRGIG 60 Query: 66 LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125 +KK AR+VGEV+GK HPHGD SVY +LVR+ Q + RY L+ GQGNFG++DGDS Sbjct: 61 NFSNQPYKKCARVVGEVLGKYHPHGDSSVYGALVRMGQEWNMRYKLVDGQGNFGSVDGDS 120 Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185 AAA RYTE R++++ E ++ +++D VD + +++ EP V P+K PNLL NG +GIAV Sbjct: 121 AAAMRYTECRLSKMGEHVMDDIEKDTVDMVNNFDDTLREPAVMPTKIPNLLVNGGNGIAV 180 Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245 GMAT+IP+HN+ E+ + A IDNPEIS + L+E+I PDFPTG I + + ++Y Sbjct: 181 GMATNIPTHNLGEVIDGCCAYIDNPEISTDGLMEFIPAPDFPTGAYIY-GLQGVKDAYET 239 Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305 GRG +RA+ +E IVVTEIPY V K +LIE IA+L+ ++ + ++ DE+ Sbjct: 240 GRGRVVMRAKAEIES-DENHDKIVVTEIPYGVNKQQLIEYIADLVKEGKLEGISNVNDET 298 Query: 306 A-EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364 + +RIV+ K R + ++++ +F ++ +++ F +N L GR P+++ L +K + Sbjct: 299 GRQGMRIVVDVK-RDANANVILNKLFKMTALQSSFSVNCIALVAGR-PRLLSLRECIKYF 356 Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRF 421 + HR +V RR+ F ++ R IL+ L+ A NIDE++ IIR P + RF Sbjct: 357 VEHRHDVTIRRAQFDLKKAQERAHILEALIKACDNIDEVVHIIRASKTPSDAQRNLEKRF 416 Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481 E Q AI+++RL L L Q+ E + L+ + + +LN+ ++ + E++E Sbjct: 417 DFDELQSKAIVDMRLSQLTGLRLDQLHQEFEELMQTIKDLQEILNNPERCKEVMKEELQE 476 Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR-----SLKSH 536 VKE + RRT E+ + + +P+ + IS+ G+I+ K Sbjct: 477 VKEKYGDD-----RRT---EIIPDEHEFNAEDFYPNDPVVITISHLGYIKRTPLADFKEQ 528 Query: 537 S---VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQ 591 + V +E D + A +L + G+ Y + ++ G G AIQ Sbjct: 529 ARGGVGSKGARTREKDFTEYIYPATMHQTMLFFTRKGRCYWMKCYDIPEGDKNSKGRAIQ 588 Query: 592 LLIDLNHNQDIVTAFV 607 ++ L+ D V AF+ Sbjct: 589 NMLSLDPG-DSVNAFL 603 >gi|260101873|ref|ZP_05752110.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus helveticus DSM 20075] gi|260084301|gb|EEW68421.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus helveticus DSM 20075] Length = 827 Score = 372 bits (955), Expect = e-100, Method: Compositional matrix adjust. Identities = 217/621 (34%), Positives = 355/621 (57%), Gaps = 38/621 (6%) Query: 8 NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67 + N + ++ V L + +L YA+S I RA+PD+RDG KPV RRI++ MSE+G+ Sbjct: 2 DDNQTQDRRIRNVDLTSMMRSSFLDYAMSVIVARALPDVRDGLKPVQRRILYGMSELGVT 61 Query: 68 FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAA 127 +KKSARIVGEV+GK HPHGD S+Y ++ +AQ F RY L+ G GNFG++DGD A Sbjct: 62 PDKPYKKSARIVGEVMGKFHPHGDSSIYLAMAHMAQDFSYRYMLVDGHGNFGSVDGDEPA 121 Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187 A RYTEARM+++A +L+ ++++ +D++ Y++ ++EPVV P++ PNLL NG +GIAVGM Sbjct: 122 AMRYTEARMSKIAVEMLRDINKNTIDWQRNYDDTENEPVVLPARIPNLLINGANGIAVGM 181 Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247 T+IP HN+ E+ L+ NP+ + + L++ I GPDFPT G I+ R I +Y G+ Sbjct: 182 TTNIPPHNLSEVISGLHMLMKNPDATTKDLMKVIPGPDFPT-GGIIMGRGGIYRAYESGK 240 Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307 G VRA +E G I+V+EIPY V K+ L++KIA+L K I + +RDES + Sbjct: 241 GNIVVRAETNIETEKSGRERIIVSEIPYMVNKAELVKKIADLAREKIIDGITGVRDESDQ 300 Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367 + R +++ ++F + M+ F +NM + G P + L +L+ +L H Sbjct: 301 TGMRITIDIRRYASASVVLNNLFKQTQMQANFGMNMVAIVDG-APHYLTLKQMLQYYLDH 359 Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLT 424 +++V+ RR+ F + + R IL+GL IA NIDEI+ IIR + D K ++SRF L Sbjct: 360 QKDVVTRRTKFELAKAEARAHILEGLRIALDNIDEIVHIIRSSHSSDIAKATLISRFGLD 419 Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484 + Q AIL++RL L LE ++++E L A+ +L ++ I E+ ++++ Sbjct: 420 DKQSQAILDMRLVRLTGLERDKVEAEYKELQAKIADYKDILAKPERIDKIIYDELLDIQK 479 Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSLKSHSVD---- 539 F +RRT E+ ++ +++ + +IEK+ I + +++ G+I+ + Sbjct: 480 RFGD-----KRRT---EIGASEVVSIEDEDLIEKQNILLTVTHNGYIKRMPIQEFKTQNR 531 Query: 540 ----LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNL 580 + + ++GD ++ +++ T D +L + GK Y+ LP NL Sbjct: 532 GGKGIKGMGVQDGDFIEHLIYSSTHDMLLFFTNAGKVYSKKAYEIPEYGRMAKGLPVVNL 591 Query: 581 LSGRGHGEAIQLLIDLNHNQD 601 L GE +Q +I++ D Sbjct: 592 LQLE-KGEKVQTVINVPEGAD 611 >gi|317123187|ref|YP_004097299.1| DNA gyrase subunit A [Intrasporangium calvum DSM 43043] gi|315587275|gb|ADU46572.1| DNA gyrase subunit A [Intrasporangium calvum DSM 43043] Length = 903 Score = 372 bits (955), Expect = e-100, Method: Compositional matrix adjust. Identities = 222/590 (37%), Positives = 346/590 (58%), Gaps = 40/590 (6%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 + V+ + L ++ Y+ YA+S I RA+PD+RDG KPVHRRI++AM + G + K Sbjct: 43 DRVEPIDLNTEMQRSYIEYAMSVIVSRALPDVRDGLKPVHRRIVYAMYDGGYRPDRGYNK 102 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 AR+VG+V+G HPHGD ++YD+LVRL Q + RYPL+ GQGNFG+ D AAA RYTE Sbjct: 103 CARVVGDVMGHYHPHGDSAIYDALVRLVQDWSMRYPLVDGQGNFGSRGNDGAAAPRYTEC 162 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 RM +A +++ +++D VDF Y+ + +P V PS+FPNLL NG++GIAVGMAT IP H Sbjct: 163 RMASIALEMVRDIEQDTVDFIPNYDGKTMQPSVLPSRFPNLLVNGSAGIAVGMATQIPPH 222 Query: 195 NVQEICEAALALIDNPEISIEKLLEYII----GPDFPTGGIIVESRESIVESYRLGRGGF 250 N++E+ E A + +PEIS E+LLE ++ GPDFPTG +I+ R I ++YR GRG Sbjct: 223 NLREVAEGAQYYLHHPEISREELLEALLGIIKGPDFPTGSLIMGHR-GIEDAYRTGRGSI 281 Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA--ED 308 +RA VEE+ + C+VVT++PYQV +L KIA+L+ +I + DI DE++ Sbjct: 282 IMRAIVNVEEI-KNRQCLVVTQLPYQVNPDQLAVKIADLVKDGKIAGIADIADETSGRTG 340 Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368 +RIV+ K ++ +++ +++ + ++T F NM L + VP+ +PLDG ++ W+ H+ Sbjct: 341 LRIVITLKRDAV-AKVVLNNLYKHTQLQTTFGANMLAL-VDDVPRTLPLDGFIRHWVDHQ 398 Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTE 425 EV+ RR++FR++ + + +L+G L A +DE+IA+IR + + ++ + E Sbjct: 399 IEVIQRRTTFRLRKAEAEIHLLRGYLKALDMLDEVIALIRRSQTVEDARDGLIQLLDIDE 458 Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485 Q AILN++LR L LE +I+ + D L ++ ++L S +Q +I E E++ I Sbjct: 459 TQAQAILNMQLRRLAALERERIQQQHDELQELIDEYQAILASEVRQ-REIVSE--ELQGI 515 Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545 K D RRT E+ D + +I +E + V I+ G+ + ++ DL Sbjct: 516 VDKYGD--ERRT---EIVPFDGDMSMEDLIPEEDVVVTITRGGYAKRTRT---DLYRSQR 567 Query: 546 KEGDSLKIA----------LHAHTTDRILLLSTD------GKAYTLPAGN 579 + G +K A TT LL T+ K Y LP G+ Sbjct: 568 RGGKGVKGAQLRGEDVVEHFFTTTTHHWLLFFTNLGRVYRAKGYELPEGS 617 >gi|67923218|ref|ZP_00516705.1| DNA gyrase, subunit A [Crocosphaera watsonii WH 8501] gi|67854949|gb|EAM50221.1| DNA gyrase, subunit A [Crocosphaera watsonii WH 8501] Length = 859 Score = 372 bits (955), Expect = e-100, Method: Compositional matrix adjust. Identities = 218/583 (37%), Positives = 337/583 (57%), Gaps = 26/583 (4%) Query: 11 TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70 T+ ++ + L + YL YA+S I RA+PD RDG KPVHRRI++AM E+GL Sbjct: 2 TIPQDRIIPTDLSNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTPER 61 Query: 71 AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130 F+K AR+VGEV+GK HPHGD +VYD+LVR+AQ F R PLI G GNFG++D D AA R Sbjct: 62 PFRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRSPLIEGHGNFGSVDNDPPAAMR 121 Query: 131 YTEARMTQVA-ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189 YTE R+ ++ +L+ ++ D VDF D ++ EP+V P++ P LL NG+SGIAVGMAT Sbjct: 122 YTECRLQALSTNALLRDIEADTVDFADNFDGSQQEPIVLPARIPQLLLNGSSGIAVGMAT 181 Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249 +IP HN+ E+ + +ALI NPE++ ++L++ I GPDFPTGG I+ R I ++Y GRG Sbjct: 182 NIPPHNLGELIDGTIALIHNPELTEKELIKIIPGPDFPTGGQIL-GRSGIHDAYLSGRGS 240 Query: 250 FRVRARW---CVEEVGRGSW-CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305 +R +E+ GR I++T++PYQ K+ LIE+IA+L+ KRI + DIRDES Sbjct: 241 ITMRGVAEIETIEQRGRPDREAIIITQLPYQTNKAALIERIADLVNDKRIDGISDIRDES 300 Query: 306 AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365 D V+ R P +++ +I+ + ++ F NM L G PQ++ + L+ +L Sbjct: 301 DRDGMRVVIELKRDAYPRVVLNNIYKQTPVQGNFGANMLALVNGE-PQLLTIKDFLQVFL 359 Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFS 422 R E + RR+ + ++ + R +L+GLLIA N+D +I +IR + K +V +F Sbjct: 360 EFRVETITRRTQYELRKAEERDHLLQGLLIALDNLDAVIQLIRGAADTTTAKQELVEQFG 419 Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482 L+ Q DAIL ++LR L LE +I +E + L + + +L ++ I E+ ++ Sbjct: 420 LSPVQADAILQMQLRRLTALEAEKIHAEHEELQLKIADLKDILARRERIEAIIEEELAQI 479 Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL-- 540 K I + RRT E+ D + +I E ++++ +G+I+ + + + Sbjct: 480 KTIHATP-----RRT---EIVHDDGEIVDTDLIANEQAIILLTEQGYIKRMPVSTFEAQQ 531 Query: 541 ------SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPA 577 +A KE D ++ L D++L S G Y + A Sbjct: 532 RATRGKAAAKIKEDDVVEHFLTCCDHDQVLFFSDRGVVYAVNA 574 >gi|293191019|ref|ZP_06609063.1| DNA gyrase, A subunit [Actinomyces odontolyticus F0309] gi|292820706|gb|EFF79672.1| DNA gyrase, A subunit [Actinomyces odontolyticus F0309] Length = 867 Score = 372 bits (955), Expect = e-100, Method: Compositional matrix adjust. Identities = 230/632 (36%), Positives = 355/632 (56%), Gaps = 43/632 (6%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 E ++ V L+ ++ YL YA+S I RA+PD+RDG KPVHRR+++AM + G ++F K Sbjct: 16 ERIRQVDLQKEMQRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMYDGGYRPTSSFSK 75 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 S+R+VGEV+G HPHGD ++YD+L RL QP+ RYPL++GQGNFG AA RYTE Sbjct: 76 SSRVVGEVMGNYHPHGDAAIYDALARLVQPWSLRYPLVAGQGNFGTPGNLGPAAPRYTEC 135 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 +M +A +++ +DE+ VDF+D Y+ + EP + P++FPNLLANG+ GIAVGMAT IP H Sbjct: 136 KMAPLAMEMVRDIDEECVDFQDNYDGRNQEPTILPARFPNLLANGSEGIAVGMATRIPPH 195 Query: 195 NVQEICEAALALIDNPEISIEKLLEYII----GPDFPTGGIIVESRESIVESYRLGRGGF 250 N++E+ +++P+ S E+LLE +I GPDFPTG I+ + I ++YR GRG Sbjct: 196 NLRELARGVEWALEHPDASREELLEALIKLIPGPDFPTGATIL-GHKGIEDAYRTGRGSI 254 Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV- 309 RA VEE+ +G C+VVTE+PYQV L +KIA+L+ I + DIRDE++ Sbjct: 255 TQRAVVNVEEI-QGRQCLVVTELPYQVNPDNLADKIAQLVRDGAIGGIADIRDETSGRTG 313 Query: 310 -RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368 R+V+ K ++ +++ +++ + ++ F NM L G VP+ + +DG ++ W+ H+ Sbjct: 314 QRLVIVLKRDAV-AKVVLNNLYKRTSLQENFSANMLALVDG-VPRTLSIDGFIRHWINHQ 371 Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTE 425 +V+ RR+ FR++ R+ IL+G L A +DE+IA+IR D+ + ++ + Sbjct: 372 IDVIVRRTKFRLRKALERLHILEGYLKALDALDEVIALIRRSPTVDEARAGLMELLDVDA 431 Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485 Q DAIL L+LR L LE +I E L A + ++ +L ++Q I+ E+ E+ + Sbjct: 432 IQADAILALQLRRLAALERQKIMDEHAELKARVDDLNDILAKPERQRAIISAELGEIVDK 491 Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHS 537 F RRT D + +I +E + V I+ G+ RS K Sbjct: 492 FGDE-----RRTRILPF---DGEMSMEDLIPEEDVVVTITRDGFAKRTRTDNYRSQKRGG 543 Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTD------GKAYTLPAGNLLSGR-GHGEAI 590 + + GD + TT LL T+ KAY +P G GR G+ + Sbjct: 544 KGVRGTQLR-GDDVVEHFFVTTTHNWLLFFTNLGRVYRAKAYEIPEG----GRDAKGQHV 598 Query: 591 QLLIDLNHNQDI--VTAFVYDSTCKLLVVSSK 620 L+ ++ I V A LV+S+K Sbjct: 599 ANLLAFQPDEHIAQVLAIRTYEDADFLVLSTK 630 >gi|254669835|emb|CBA04223.1| DNA gyrase subunit A [Neisseria meningitidis alpha153] Length = 916 Score = 372 bits (955), Expect = e-100, Method: Compositional matrix adjust. Identities = 226/628 (35%), Positives = 352/628 (56%), Gaps = 65/628 (10%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 VSL + + YL YA+S I RA+PD+RDG KPVHRR+++AM E+ ++ AA+KKSARIV Sbjct: 19 VSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIV 78 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGD +VYD++VR+AQ F RY LI GQGNFG++DG +AAA RYTE RM ++ Sbjct: 79 GDVIGKYHPHGDTAVYDTIVRMAQNFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMAKI 138 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 + +L ++E+ V+F Y+ + EP+V P++FP LL NG+SGIAVGMAT+IP HN+ + Sbjct: 139 SHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGSSGIAVGMATNIPPHNLSDT 198 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 A L L+D P+ I++L++ I PDFPTG I + E Y+ GRG +R + +E Sbjct: 199 VNACLRLLDAPDTEIDELIDIIQAPDFPTGATIY-GLSGVREGYKTGRGRVIMRGKTHIE 257 Query: 260 EVGRGS--WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317 +G+ IV+ EIPYQV K++L+EKI +L+ K + + ++RDES + V+ Sbjct: 258 PIGKNGEREAIVIDEIPYQVNKAKLVEKIGDLVREKTLEGISELRDESDKSGMRVVIELK 317 Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377 R+ + ++++ ++ L+ ++ F +NM VL G+ P+++ L IL E+L HRREV+ RR+ Sbjct: 318 RNENAEVVLNQLYKLTPLQDSFGINMVVLVDGQ-PRLLNLKQILSEFLRHRREVVTRRTL 376 Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSR-------------- 420 FR++ I +G +A NIDEII +I+ N + K +++R Sbjct: 377 FRLKKARHEGHIAEGKAVALSNIDEIIKLIKESPNAAEAKDKLLARPWRSSLVEEMLTRS 436 Query: 421 ----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458 + L+E Q DAIL + LR+L L++ +I NL+ + Sbjct: 437 GLDLEMMRPEGLAANIGLKEQGYYLSEIQADAILRMSLRNLTGLDQEEIVESYKNLMGKI 496 Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518 +L+ ++ I E+ E+K T+ G R + D A + +I + Sbjct: 497 IDFVDILSKPERITQIIRDELEEIK------TNYGDERRSEINPFGGDIA--DEDLIPQR 548 Query: 519 PITVVISNRGWIRSLKSHSVDL--------SALHFKEGDSLKIALHAHTTDRILLLSTDG 570 + V +++ G+I++ + A K+ D ++ A+T D ++ + G Sbjct: 549 EMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDYLMCFTNLG 608 Query: 571 KA-----YTLPAGNLLS-GRGHGEAIQL 592 K Y LP G S GR IQL Sbjct: 609 KCHWIKVYKLPEGGRNSRGRPINNVIQL 636 >gi|304387287|ref|ZP_07369480.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Neisseria meningitidis ATCC 13091] gi|304338670|gb|EFM04787.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Neisseria meningitidis ATCC 13091] Length = 916 Score = 372 bits (955), Expect = e-100, Method: Compositional matrix adjust. Identities = 229/628 (36%), Positives = 353/628 (56%), Gaps = 65/628 (10%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 VSL + + YL YA+S I RA+PD+RDG KPVHRR+++AM E+ ++ AA+KKSARIV Sbjct: 19 VSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIV 78 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGD +VYD++VR+AQ F RY LI GQGNFG++DG +AAA RYTE RM ++ Sbjct: 79 GDVIGKYHPHGDTAVYDTIVRMAQNFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMAKI 138 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 + +L ++E+ V+F Y+ + EP+V P++FP LL NG+SGIAVGMAT+IP HN+ + Sbjct: 139 SHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGSSGIAVGMATNIPPHNLSDT 198 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 A L L+D P+ I++L++ I PDFPTG I + E Y+ GRG +R + +E Sbjct: 199 VNACLRLLDAPDTEIDELIDIIQAPDFPTGATIY-GLSGVREGYKTGRGRVVMRGKTHIE 257 Query: 260 EVGRGS--WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317 +GR IV+ EIPYQV K++L+EKI +L+ K + + ++RDES + V+ Sbjct: 258 PIGRNGEREAIVIDEIPYQVNKAKLVEKIGDLVREKTLEGISELRDESDKSGMRVVIELK 317 Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377 R+ + ++++ ++ L+ ++ F +NM VL G+ P+++ L IL E+L HRREV+ RR+ Sbjct: 318 RNENAEVVLNQLYKLTPLQDSFGINMVVLVDGQ-PRLLNLKQILSEFLRHRREVVTRRTL 376 Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN-----EDKPKPV-----------MVSR- 420 FR++ I +G +A NIDEII +I+ E K K + M++R Sbjct: 377 FRLKKARHEGHIAEGKAVALSNIDEIIRLIKESPNAAEAKDKLLAHPWRSSLVEEMLTRS 436 Query: 421 ----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458 + L+E Q DAIL + LR+L L++ +I NL+ + Sbjct: 437 GLDLEMMRPEGLAANIGLKEQGYYLSEIQADAILRMSLRNLTGLDQEEIVESYKNLMGKI 496 Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518 +L+ ++ I E+ E+K T+ G R + D A + +I + Sbjct: 497 IDFVDILSKPERITQIIRDELEEIK------TNYGDERRSEINPFGGDIA--DEDLIPQR 548 Query: 519 PITVVISNRGWIRSLKSHSVDL--------SALHFKEGDSLKIALHAHTTDRILLLSTDG 570 + V +++ G+I++ + A K+ D ++ A+T D ++ + G Sbjct: 549 EMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDYLMCFTNLG 608 Query: 571 KA-----YTLPAGNLLS-GRGHGEAIQL 592 K Y LP G S GR IQL Sbjct: 609 KCHWIKVYKLPEGGRNSRGRPINNVIQL 636 >gi|12322780|gb|AAG51377.1|AC011560_9 putative DNA gyrase subunit A; 1114-7603 [Arabidopsis thaliana] Length = 917 Score = 372 bits (955), Expect = e-100, Method: Compositional matrix adjust. Identities = 242/695 (34%), Positives = 387/695 (55%), Gaps = 44/695 (6%) Query: 28 ERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLH 87 E Y++YALS + RA+PD+RDG KPVHRRI+ AM E+G+ +KK AR+VGEV+GK H Sbjct: 112 ESYMSYALSVLLGRALPDVRDGLKPVHRRILFAMHELGMSSKKPYKKCARVVGEVLGKFH 171 Query: 88 PHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE-LILQG 146 PHGD +VYDSLVR+AQ F R PLI G GNFG+ID D AA RYTE R+ +AE ++L Sbjct: 172 PHGDTAVYDSLVRMAQSFSLRCPLIQGHGNFGSIDADPPAAMRYTECRLDPLAEAVLLSD 231 Query: 147 VDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALAL 206 +D+D VDF ++ EP V P++ P LL NG SGIAVGMAT+IP HN+ E+ + AL Sbjct: 232 LDQDTVDFVANFDNSQKEPAVLPARLPALLLNGASGIAVGMATNIPPHNLGELVDVLCAL 291 Query: 207 IDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSW 266 I NPE ++++LLEY+ PDFPTGGII+ ++++YR GRG VR + VE + + Sbjct: 292 IHNPEATLQELLEYMPAPDFPTGGIIM-GNLGVLDAYRTGRGRVVVRGKAEVELLDPKTK 350 Query: 267 --CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDL 324 +++TEIPYQ K+ L++KIAEL+ K + + DIRDES + V+ R DP L Sbjct: 351 RNAVIITEIPYQTNKATLVQKIAELVENKTLEGISDIRDESDRNGMRVVIELKRGGDPAL 410 Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384 ++ +++ + +++ F NM + G P++M L +L+ ++ R V+ RR+ F++ Sbjct: 411 VLNNLYRHTALQSSFSCNMVGICDGE-PKLMGLKELLQAFIDFRCSVVERRARFKLSHAQ 469 Query: 385 RRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLTENQVDAILNLRLRSLRK 441 +R I++G+++ N+DE+I +I + S + L+E Q +AIL + LR L Sbjct: 470 QRKHIIEGIVVGLDNVDEVIELITKASSHSSATAALQSEYGLSEKQAEAILEITLRRLTA 529 Query: 442 LEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCE 501 LE + E +L + K++ LL++ I E E+K+ FS RR+ + Sbjct: 530 LERKKFTDESSSLTEQITKLEQLLSTRTNILKLIEQEAIELKDRFSSP-----RRSMLED 584 Query: 502 VSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL--------SALHFKEGDSLKI 553 D + +I E + + +S +G+++ +K+ + +L S + D++ Sbjct: 585 SDSGDLEDID--VIPNEEMLMAVSEKGYVKRMKADTFNLQHRGTIGKSVGKLRVDDAMSD 642 Query: 554 ALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI-----V 603 L H D +L S G +AY +P S G + ++ ++ + + V Sbjct: 643 FLVCHAHDHVLFFSDRGIVYSTRAYKIPE---CSRNAAGTPLVQILSMSEGERVTSIVPV 699 Query: 604 TAFVYDSTCKLLVVSSKGNAFIVEES-EIIANTRK-GKTFLKVSSEEKMKLVVKVTGDH- 660 + F D +L V N I + S ++ + R G ++++S +++K V + D Sbjct: 700 SEFAEDRYLLMLTV----NGCIKKVSLKLFSGIRSTGIIAIQLNSGDELKWVRCCSSDDL 755 Query: 661 VAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKD 694 VA+ +N + + + D + +SR KGV K+ Sbjct: 756 VAMASQNGMVALSTCDGVRTLSRNTKGVTAMRLKN 790 >gi|328468765|gb|EGF39736.1| DNA gyrase subunit A [Lactobacillus helveticus MTCC 5463] Length = 827 Score = 372 bits (955), Expect = e-100, Method: Compositional matrix adjust. Identities = 217/621 (34%), Positives = 355/621 (57%), Gaps = 38/621 (6%) Query: 8 NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67 + N + ++ V L + +L YA+S I RA+PD+RDG KPV RRI++ MSE+G+ Sbjct: 2 DDNQTQDRRIRNVDLTSMMRSSFLDYAMSVIVARALPDVRDGLKPVQRRILYGMSELGVT 61 Query: 68 FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAA 127 +KKSARIVGEV+GK HPHGD S+Y ++ +AQ F RY L+ G GNFG++DGD A Sbjct: 62 PDKPYKKSARIVGEVMGKFHPHGDSSIYLAMAHMAQDFSYRYMLVDGHGNFGSVDGDEPA 121 Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187 A RYTEARM+++A +L+ ++++ +D++ Y++ ++EPVV P++ PNLL NG +GIAVGM Sbjct: 122 AMRYTEARMSKIAVEMLRDINKNTIDWQRNYDDTENEPVVLPARIPNLLINGANGIAVGM 181 Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247 T+IP HN+ E+ L+ NP+ + + L++ I GPDFPT G I+ R I +Y G+ Sbjct: 182 TTNIPPHNLSEVISGLHMLMKNPDATTKDLMKVIPGPDFPT-GGIIMGRGGIYRAYESGK 240 Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307 G VRA +E G I+V+EIPY V K+ L++KIA+L K I + +RDES + Sbjct: 241 GNIVVRAETNIETEKSGRERIIVSEIPYMVNKAELVKKIADLAREKIIDGITGVRDESDQ 300 Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367 + R +++ ++F + M+ F +NM + G P + L +L+ +L H Sbjct: 301 TGMRITIDIRRDASASVVLNNLFKQTQMQANFGMNMVAIVDG-APHYLTLKQMLQYYLDH 359 Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLT 424 +++V+ RR+ F + + R IL+GL IA NIDEI+ IIR + D K ++SRF L Sbjct: 360 QKDVVTRRTKFELAKAEARAHILEGLRIALDNIDEIVHIIRSSHSSDIAKATLISRFGLD 419 Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484 + Q AIL++RL L LE ++++E L A+ +L ++ I E+ ++++ Sbjct: 420 DKQSQAILDMRLVRLTGLERDKVEAEYKELQAKIADYKDILAKPERIDKIIYDELLDIQK 479 Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSLKSHSVD---- 539 F +RRT E+ ++ +++ + +IEK+ I + +++ G+I+ + Sbjct: 480 RFGD-----KRRT---EIGASEVISIEDEDLIEKQNILLTVTHNGYIKRMPIQEFKTQNR 531 Query: 540 ----LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNL 580 + + ++GD ++ +++ T D +L + GK Y+ LP NL Sbjct: 532 GGKGIKGMGVQDGDFIEHLIYSSTHDMLLFFTNAGKVYSKKAYEIPEYGRMAKGLPVVNL 591 Query: 581 LSGRGHGEAIQLLIDLNHNQD 601 L GE +Q +I++ D Sbjct: 592 LQLE-KGEKVQTVINVPEGAD 611 >gi|6630561|gb|AAF19580.1|AC011708_23 putative DNA gyrase A subunit [Arabidopsis thaliana] Length = 899 Score = 372 bits (955), Expect = e-100, Method: Compositional matrix adjust. Identities = 242/695 (34%), Positives = 387/695 (55%), Gaps = 44/695 (6%) Query: 28 ERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLH 87 E Y++YALS + RA+PD+RDG KPVHRRI+ AM E+G+ +KK AR+VGEV+GK H Sbjct: 94 ESYMSYALSVLLGRALPDVRDGLKPVHRRILFAMHELGMSSKKPYKKCARVVGEVLGKFH 153 Query: 88 PHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAE-LILQG 146 PHGD +VYDSLVR+AQ F R PLI G GNFG+ID D AA RYTE R+ +AE ++L Sbjct: 154 PHGDTAVYDSLVRMAQSFSLRCPLIQGHGNFGSIDADPPAAMRYTECRLDPLAEAVLLSD 213 Query: 147 VDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALAL 206 +D+D VDF ++ EP V P++ P LL NG SGIAVGMAT+IP HN+ E+ + AL Sbjct: 214 LDQDTVDFVANFDNSQKEPAVLPARLPALLLNGASGIAVGMATNIPPHNLGELVDVLCAL 273 Query: 207 IDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSW 266 I NPE ++++LLEY+ PDFPTGGII+ ++++YR GRG VR + VE + + Sbjct: 274 IHNPEATLQELLEYMPAPDFPTGGIIM-GNLGVLDAYRTGRGRVVVRGKAEVELLDPKTK 332 Query: 267 --CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDL 324 +++TEIPYQ K+ L++KIAEL+ K + + DIRDES + V+ R DP L Sbjct: 333 RNAVIITEIPYQTNKATLVQKIAELVENKTLEGISDIRDESDRNGMRVVIELKRGGDPAL 392 Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384 ++ +++ + +++ F NM + G P++M L +L+ ++ R V+ RR+ F++ Sbjct: 393 VLNNLYRHTALQSSFSCNMVGICDGE-PKLMGLKELLQAFIDFRCSVVERRARFKLSHAQ 451 Query: 385 RRVEILKGLLIAYLNIDEIIAIIRN---EDKPKPVMVSRFSLTENQVDAILNLRLRSLRK 441 +R I++G+++ N+DE+I +I + S + L+E Q +AIL + LR L Sbjct: 452 QRKHIIEGIVVGLDNVDEVIELITKASSHSSATAALQSEYGLSEKQAEAILEITLRRLTA 511 Query: 442 LEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCE 501 LE + E +L + K++ LL++ I E E+K+ FS RR+ + Sbjct: 512 LERKKFTDESSSLTEQITKLEQLLSTRTNILKLIEQEAIELKDRFSSP-----RRSMLED 566 Query: 502 VSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL--------SALHFKEGDSLKI 553 D + +I E + + +S +G+++ +K+ + +L S + D++ Sbjct: 567 SDSGDLEDID--VIPNEEMLMAVSEKGYVKRMKADTFNLQHRGTIGKSVGKLRVDDAMSD 624 Query: 554 ALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI-----V 603 L H D +L S G +AY +P S G + ++ ++ + + V Sbjct: 625 FLVCHAHDHVLFFSDRGIVYSTRAYKIPE---CSRNAAGTPLVQILSMSEGERVTSIVPV 681 Query: 604 TAFVYDSTCKLLVVSSKGNAFIVEES-EIIANTRK-GKTFLKVSSEEKMKLVVKVTGDH- 660 + F D +L V N I + S ++ + R G ++++S +++K V + D Sbjct: 682 SEFAEDRYLLMLTV----NGCIKKVSLKLFSGIRSTGIIAIQLNSGDELKWVRCCSSDDL 737 Query: 661 VAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKD 694 VA+ +N + + + D + +SR KGV K+ Sbjct: 738 VAMASQNGMVALSTCDGVRTLSRNTKGVTAMRLKN 772 >gi|46446708|ref|YP_008073.1| DNA gyrase subunit A [Candidatus Protochlamydia amoebophila UWE25] gi|46400349|emb|CAF23798.1| probable DNA gyrase subunit A [Candidatus Protochlamydia amoebophila UWE25] Length = 856 Score = 372 bits (955), Expect = e-100, Method: Compositional matrix adjust. Identities = 255/777 (32%), Positives = 406/777 (52%), Gaps = 87/777 (11%) Query: 26 LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85 +++ YL Y++S I RA+PD RDG KP RRI++AM ++ L +K A+I G+ G Sbjct: 18 MKDSYLRYSMSVIISRALPDARDGLKPSQRRILYAMRQLNLGPNGKHRKCAKISGDTSGD 77 Query: 86 LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145 HPHG+ +Y +LVR+AQ ++ RY L+ GQGNFG++DGD AA RYTEAR+T A ++ Sbjct: 78 YHPHGEMVIYPTLVRMAQKWIMRYNLVDGQGNFGSVDGDPPAAMRYTEARLTTAAVQLMD 137 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 +D+D V+ Y+E EP VFPSKFPNLL NG+SGIAVGMAT+IP HN+ E+ +A L Sbjct: 138 DLDKDTVEMVPNYDETKKEPTVFPSKFPNLLCNGSSGIAVGMATNIPPHNLNELIKATLL 197 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEV--GR 263 L++NP SI+ +++ + GPDFPTGG+I R I E++ GRG +R VEE Sbjct: 198 LLENPTTSIDDIMKVMPGPDFPTGGMICGYR-GIKEAFHTGRGKLILRGVIRVEENEDNP 256 Query: 264 GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKNRSLDP 322 + + EIPY V KSRLIE IAELI K I + D+RDES +D +RIV+ K R P Sbjct: 257 DRSRLAIDEIPYNVNKSRLIEHIAELINNKTITGISDLRDESDKDGMRIVIELK-RGEVP 315 Query: 323 DLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQA 382 ++++ ++ SD++ F NM L G +P+ M + ++ W+ HR +V+ RR+ F + Sbjct: 316 EVIINQLYKFSDLQITFGCNMLALDKG-LPRTMNVKQLISVWIEHRIDVVRRRTRFELNK 374 Query: 383 IDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAILNLRLRSL 439 + R IL+G L A ++DE++ +IR N D+ + ++ +F TE Q +AIL+LRL L Sbjct: 375 AEARAHILEGYLKAIDHLDEVVRLIRASSNRDEARIELIKQFEFTERQANAILDLRLYQL 434 Query: 440 RKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTF 499 LE +I E LL + + + ++L S I E+ ++++ KS R+T Sbjct: 435 TGLERDKINDEYQELLKKIDYLRAVLASEAMVKEIIREELLDIQK-HHKS----ERQT-- 487 Query: 500 CEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------DLSALHFK-EGDS 550 ++ A+ + +I EP+ + IS +I+ + ++ ++ + K E D Sbjct: 488 -QIIAAETEVNMEDLIANEPVIITISQDDYIKRMPVNTFREQRRGGQGVTGMQLKREEDV 546 Query: 551 LKIALHAHTTDRILLLSTDGKAYTL---------------PAGNLLSGRGHGEAIQLL-- 593 +K A T D +L+ + G+ Y L P NLL E I + Sbjct: 547 IKGLYVATTHDYLLIFTNLGRCYWLKVWQIPETGRKSKGKPLINLLEDIRPEEKIATIQR 606 Query: 594 -------------------------------------IDLNHNQDIVTAFVYDSTCKLLV 616 +D++ ++V A + ++++ Sbjct: 607 VSSFEEEACILMATKRAVVKKSLLNEFSNPRRKGIWALDIDEGDELVAARLVKPEQQVML 666 Query: 617 VSSKGNAFIVEESEI--IANTRKGKTFLKVSSEEKMKLVVK-VTGDH-VAVVGENRKLLI 672 + +G A EES + + T +G + E + + V GD + VV EN Sbjct: 667 FTHQGMAVRFEESNVRPMGRTARGVKGATLRGENDYIVGCEVVNGDESILVVCENGFGKR 726 Query: 673 FSIDQIPEMSRGK-GVR--LQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDL 726 +D + +RG GVR + S ++G + +C +G+ + + G++ + NDL Sbjct: 727 SQVDDFRQTNRGGVGVRSIITSERNGKVIGALCVTDEDGMVMMSATGQTVRINMNDL 783 >gi|18311050|ref|NP_562984.1| DNA topoisomerase IV subunit A [Clostridium perfringens str. 13] gi|182624022|ref|ZP_02951810.1| DNA topoisomerase, GyrA/ParC subunit family [Clostridium perfringens D str. JGS1721] gi|18145732|dbj|BAB81774.1| DNA topoisomerase IV subunit A [Clostridium perfringens str. 13] gi|177910915|gb|EDT73269.1| DNA topoisomerase, GyrA/ParC subunit family [Clostridium perfringens D str. JGS1721] Length = 979 Score = 372 bits (955), Expect = e-100, Method: Compositional matrix adjust. Identities = 212/599 (35%), Positives = 355/599 (59%), Gaps = 27/599 (4%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 + N+ + L + + YL YA+ K+RA+PD+RDG KPVHRRI++ + + Sbjct: 11 DNNIIRMPLEEVMPDNYLPYAVEVAKDRALPDVRDGLKPVHRRILYGAYMLKAFPDKPYY 70 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSARIVG+++GK HPHGD SVYD++V LAQ F R PLI G GN+G+IDGD AAA RYTE Sbjct: 71 KSARIVGDILGKYHPHGDSSVYDAMVILAQNFSTRAPLIDGHGNWGSIDGDGAAAMRYTE 130 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 AR++ ++ +L+ ++++ VD Y++ + EP V P+++PNLL NGT GIAVG++T+IP Sbjct: 131 ARLSSISMEMLRDIEKNVVDMVPNYSDSEMEPKVLPARYPNLLVNGTFGIAVGLSTNIPP 190 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN++E+ + LA IDN EI+ +L+ YI GPD PTGG+++ ++++ +Y G G +R Sbjct: 191 HNLREVIDGTLAYIDNNEITTRELMNYIKGPDLPTGGVLI-GEKTLLSAYETGEGKVTLR 249 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR----IPLLEDIRDESAED- 308 A+ +E + G IV+TE PY+ K+R+++ I+++ KR + + DIRDES Sbjct: 250 AKAKIETLENGRLGIVITEFPYRRNKARILQTISDMTGDKRHAKALDGIVDIRDESDRTG 309 Query: 309 VRIVLFPKNRSLDPDL---LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365 +R V+ K +++D D+ +++ ++ +D++ NM L+ G+ P+ M L I+ ++ Sbjct: 310 IRAVIEFK-KAVDHDMADKVLKYLYKKTDLQGNISFNMVALADGK-PETMGLKTIISHYV 367 Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFS 422 H+++V+ RR+ ++ ++R I++G + A +DE+IA IR K +VS+F Sbjct: 368 NHQKDVVTRRTKRELEVAEKRFHIVEGFIKAIGIMDEVIATIRASKSKKDAHENLVSKFG 427 Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482 T+ Q +AIL L L L LE + E L + + + +L + I E++EV Sbjct: 428 FTDLQAEAILELMLYRLTGLEIKVFQKEHKELSKKIKALRKILENESVLLGVIKDELKEV 487 Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--LKSH---S 537 E++ RRT E K L++ +I E + V +SN G+I+ LK++ + Sbjct: 488 AEVYG-----DERRTALIEDESEAKIDLEE-LIVAEDVMVTLSNEGFIKKIPLKTYNRSN 541 Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLI 594 VD + + ++EGD LK + ++T D + + + G Y + ++ + GE ++ LI Sbjct: 542 VDENEIEYREGDYLKFLIKSNTKDTLAIFTDKGTVYQIKCNSVADKKWKDKGERLEDLI 600 >gi|168215695|ref|ZP_02641320.1| DNA topoisomerase, GyrA/ParC subunit family [Clostridium perfringens NCTC 8239] gi|182382335|gb|EDT79814.1| DNA topoisomerase, GyrA/ParC subunit family [Clostridium perfringens NCTC 8239] Length = 979 Score = 372 bits (955), Expect = e-100, Method: Compositional matrix adjust. Identities = 212/599 (35%), Positives = 355/599 (59%), Gaps = 27/599 (4%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 + N+ + L + + YL YA+ K+RA+PD+RDG KPVHRRI++ + + Sbjct: 11 DNNIIRMPLEEVMPDNYLPYAVEVAKDRALPDVRDGLKPVHRRILYGAYMLKAFPDKPYY 70 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSARIVG+++GK HPHGD SVYD++V LAQ F R PLI G GN+G+IDGD AAA RYTE Sbjct: 71 KSARIVGDILGKYHPHGDSSVYDAMVILAQNFSTRAPLIDGHGNWGSIDGDGAAAMRYTE 130 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 AR++ ++ +L+ ++++ VD Y++ + EP V P+++PNLL NGT GIAVG++T+IP Sbjct: 131 ARLSSISMEMLRDIEKNVVDMVPNYSDSEMEPKVLPARYPNLLVNGTFGIAVGLSTNIPP 190 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN++E+ + LA IDN EI+ +L+ YI GPD PTGG+++ ++++ +Y G G +R Sbjct: 191 HNLREVIDGTLAYIDNNEITTRELMNYIKGPDLPTGGVLI-GEKTLLSAYETGEGKVTLR 249 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR----IPLLEDIRDESAED- 308 A+ +E + G IV+TE PY+ K+R+++ I+++ KR + + DIRDES Sbjct: 250 AKAKIETLENGRLGIVITEFPYRRNKARILQTISDMTGDKRHAKALDGIVDIRDESDRTG 309 Query: 309 VRIVLFPKNRSLDPDL---LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365 +R V+ K +++D D+ +++ ++ +D++ NM L+ G+ P+ M L I+ ++ Sbjct: 310 IRAVIEFK-KAVDHDMADKVLKYLYKKTDLQGNISFNMVALADGK-PETMGLKTIISHYV 367 Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFS 422 H+++V+ RR+ ++ ++R I++G + A +DE+IA IR K +VS+F Sbjct: 368 NHQKDVVTRRTKRELEVAEKRFHIVEGFIKAIGIMDEVIATIRASKSKKDAHENLVSKFG 427 Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482 T+ Q +AIL L L L LE + E L + + + +L + I E++EV Sbjct: 428 FTDLQAEAILELMLYRLTGLEIKVFQKEHKELSKKIKALRKILENESVLLGVIKDELKEV 487 Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--LKSH---S 537 E++ RRT E K L++ +I E + V +SN G+I+ LK++ + Sbjct: 488 AEVYG-----DERRTALIEDESEAKIDLEE-LIVAEDVMVTLSNEGFIKKIPLKTYNRSN 541 Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLI 594 VD + + ++EGD LK + ++T D + + + G Y + ++ + GE ++ LI Sbjct: 542 VDENEIEYREGDYLKFLIKSNTKDTLAIFTDKGTVYQIKCNSVADKKWKDKGERLEDLI 600 >gi|157060400|gb|ABV03206.1| GyrA [Chlamydia trachomatis] Length = 434 Score = 372 bits (954), Expect = e-100, Method: Compositional matrix adjust. Identities = 198/431 (45%), Positives = 279/431 (64%), Gaps = 8/431 (1%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 EE + +L ++E YL Y++S I RA+PD RDG KP RRI++AM ++ L G + Sbjct: 5 EEIIVPKNLEEEMKESYLRYSMSVIISRALPDARDGLKPSQRRILYAMKQLNLTPGVKHR 64 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 K A+I G+ G HPHG++ +Y +LVR+AQ + RYPL+ GQGNFG+IDGD AAA RYTE Sbjct: 65 KCAKICGDTSGDYHPHGERVIYPTLVRMAQDWAMRYPLVDGQGNFGSIDGDPAAAMRYTE 124 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 AR+T A +L+ +D+D VD Y+E EPVVFPSKFPNLL NG+SGIAVGMAT+IP Sbjct: 125 ARLTHSAIFLLEDLDKDTVDMVPNYDETKYEPVVFPSKFPNLLCNGSSGIAVGMATNIPP 184 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E+ EA L ++ N + SIE +LE + GPDFPTGGII + E I +Y GRG R+R Sbjct: 185 HNLGELIEATLLVLANSQTSIEDILEVMPGPDFPTGGIICGT-EGIRSTYYTGRGKLRLR 243 Query: 254 ARWCVEE-VGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRI 311 AR VEE + I++TE+PY V KSRLIE+IAELI K + + D+RDES +D +R+ Sbjct: 244 ARMHVEENSDKQRENIILTEMPYNVNKSRLIEQIAELINEKTLTGISDVRDESDKDGIRV 303 Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371 VL K + ++++ ++ +D++ F NM L +P+ M + ++ W+ HR +V Sbjct: 304 VLELK-KGESSEVVINRLYKFTDVQVTFGANMLALDKN-LPRTMNIHRMISAWIRHRMDV 361 Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQV 428 + RR+ + + + R IL+G L A +DE++ IR N++ K +V FS +E Q Sbjct: 362 IRRRTRYELNKAEARAHILEGFLKALSCMDEVVKTIRESSNKEHAKQQLVELFSFSEAQA 421 Query: 429 DAILNLRLRSL 439 AIL LRL L Sbjct: 422 LAILELRLYQL 432 >gi|153819652|ref|ZP_01972319.1| DNA gyrase, subunit A [Vibrio cholerae NCTC 8457] gi|126509811|gb|EAZ72405.1| DNA gyrase, subunit A [Vibrio cholerae NCTC 8457] Length = 830 Score = 372 bits (954), Expect = e-100, Method: Compositional matrix adjust. Identities = 231/589 (39%), Positives = 339/589 (57%), Gaps = 64/589 (10%) Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSAR+VG+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG+IDGDSAAA RYTE Sbjct: 1 KSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTE 60 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 RM+++A +L +D++ VD+ Y+ + P V P+K PNLL NG SGIAVGMAT+IP Sbjct: 61 VRMSKIAHELLADLDKETVDYVPNYDGTEQIPAVLPTKIPNLLINGASGIAVGMATNIPP 120 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E+ + LA IDN I+I++L++YI GPDFPT +I R+ I+++Y+ GRG +R Sbjct: 121 HNLGEVIDGCLAYIDNEAITIDELMDYIPGPDFPTAALI-SGRKGIIDAYKTGRGKVYMR 179 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIV 312 ++ +E G I+V+EIPYQV K+RLIEKIAEL+ K++ + +RDES +D +RIV Sbjct: 180 SKAEIETDKNGKETIIVSEIPYQVNKARLIEKIAELVKEKKVEGISALRDESDKDGMRIV 239 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 + K R ++++ +++ + ++T F +NM L G+ P++ L +LK ++ HRREV+ Sbjct: 240 IECK-RDAVGEVVLNNLYANTQLQTTFGINMVALDNGQ-PKLFNLKEMLKCFVDHRREVV 297 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR--------- 420 RR+ F ++ R IL+GL +A NIDEII +IR P K +++R Sbjct: 298 TRRTIFELRKARERAHILEGLALALANIDEIIELIRRAATPAEAKEGLIARGWDLGNVAA 357 Query: 421 -------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLL 455 + LTE Q AIL+LRL L LE +I E LL Sbjct: 358 MLERAGTDAARPEWLEPQYGIRDGKYFLTEQQAQAILDLRLHKLTGLEHEKILDEYKQLL 417 Query: 456 AEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMI 515 E + +L S ++ I E+ ++ FS + RRT E++ A + +I Sbjct: 418 EEIAALMHILASTERLMEVIREELEAIRAGFSDA-----RRT---EITAATHDIDMEELI 469 Query: 516 EKEPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLS 567 +E + V +S+ G+++ + + SA KE D ++ L A+T D ILL S Sbjct: 470 AREDVVVTLSHEGYVKYQLLSDYEAQRRGGKGKSATKMKEEDYIERLLVANTHDNILLFS 529 Query: 568 TDGKAYTLPAGNL-LSGR-GHGEAIQLLIDLNHNQDI-----VTAFVYD 609 T GK Y + L L+ R G+ I L+ L N+ I VT F D Sbjct: 530 TRGKTYRMKVYQLPLASRTARGKPIVNLLPLEENERITAILPVTEFSED 578 >gi|261879213|ref|ZP_06005640.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Prevotella bergensis DSM 17361] gi|270334161|gb|EFA44947.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Prevotella bergensis DSM 17361] Length = 878 Score = 372 bits (954), Expect = e-100, Method: Compositional matrix adjust. Identities = 217/622 (34%), Positives = 349/622 (56%), Gaps = 32/622 (5%) Query: 6 ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65 + + T+ + + +++ ++ Y+ Y++S I RA+PD+RDGFKPVHRRI++ M +G Sbjct: 1 MDENQTIDHDRIMKINIEEEMKSSYIDYSMSVIVSRALPDVRDGFKPVHRRILYGMLGLG 60 Query: 66 LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125 +KK AR+VGEV+GK HPHGD SVY +LVR+ Q + RY L+ GQGNFG++DGDS Sbjct: 61 NTSDKPYKKCARVVGEVLGKYHPHGDSSVYGALVRMGQEWNMRYKLVDGQGNFGSVDGDS 120 Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185 AA RYTE R++++ E I+ +D+D VD + +++ +EP V P++ PNLL NG +GIAV Sbjct: 121 PAAMRYTECRLSKMGEHIMDDIDKDTVDMVNNFDDTLTEPAVMPTRVPNLLVNGGNGIAV 180 Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245 GMAT+IP+HN+ E+ + A IDNPEI E L++YI PDFPTG I + + ++Y Sbjct: 181 GMATNIPTHNLGEVIDGCCAFIDNPEIDTEGLMQYIPAPDFPTGAYIY-GIQGVKDAYET 239 Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305 GRG +RA+ +E IVVTEIPY V K +LIE IAEL+ +I + ++ DE+ Sbjct: 240 GRGRVVMRAKAEIES-DESHDRIVVTEIPYGVNKQQLIEYIAELVKEGKIEGISNVNDET 298 Query: 306 A-EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRV------PQVMPLD 358 + +RIV+ K R + +++ +F ++ +++ F +N L + P+++ L Sbjct: 299 GRQGMRIVVDVK-RDANARVILNKLFKMTALQSSFSVNNIALIPNKSNHAQLRPKLLSLR 357 Query: 359 GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV 418 + ++ HR EV RR+ F ++ R ILKGL+IA NIDE++ IIR P Sbjct: 358 ECISYFIDHRHEVTIRRTKFDLRKAQERAHILKGLIIACDNIDEVVHIIRGSKTPAEAQA 417 Query: 419 S---RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQI 475 + RF L Q AI+++RL L L Q+ +E ++L+ +++ S+L+ ++ + Sbjct: 418 NLEKRFELDNLQSKAIVDMRLSQLTGLRMDQLHAEYEDLMKLIDELQSVLDDPEKCKEVM 477 Query: 476 ACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI----- 530 E++ VK +K D R R E + +P+ + +S+ G+I Sbjct: 478 KTELQAVK---AKYGDERRTRIILDE-----HEFNAEDFYPNDPVVITVSHLGYIKRTPL 529 Query: 531 ---RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RG 585 R V H ++ D + A ++ + G+ Y L ++ G Sbjct: 530 SDFREQARGGVGSKGAHTRDKDFTEYIYPATMHQTMMFFTKKGRCYWLHCYDIPEGDKTS 589 Query: 586 HGEAIQLLIDLNHNQDIVTAFV 607 G AIQ L++++ + D V AF+ Sbjct: 590 KGRAIQNLLNIDPD-DSVNAFL 610 >gi|225075864|ref|ZP_03719063.1| hypothetical protein NEIFLAOT_00887 [Neisseria flavescens NRL30031/H210] gi|224952810|gb|EEG34019.1| hypothetical protein NEIFLAOT_00887 [Neisseria flavescens NRL30031/H210] Length = 923 Score = 372 bits (954), Expect = e-100, Method: Compositional matrix adjust. Identities = 226/628 (35%), Positives = 352/628 (56%), Gaps = 65/628 (10%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 VSL + + YL YA+S I RA+PD+RDG KPVHRR+++AM E+ ++ +A+KKSARIV Sbjct: 19 VSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELKNNWNSAYKKSARIV 78 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGD +VYD++VR+AQ F RY LI GQGNFG++DG +AAA RYTE RM ++ Sbjct: 79 GDVIGKYHPHGDTAVYDTIVRMAQDFSMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMEKI 138 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 + +L ++E+ V+F Y+ + EP+V P++FP LL NG+SGIAVGMAT+IP HN+ + Sbjct: 139 SHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPALLVNGSSGIAVGMATNIPPHNLGDT 198 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 A L L+D+PE I++L+ I PDFPTG I + E Y+ GRG +R +E Sbjct: 199 INACLRLLDDPETEIDELINIIQAPDFPTGATIY-GLSGVREGYKTGRGRVVMRGTTHIE 257 Query: 260 EVGRGS--WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317 +G+ IV+ EIPYQV K++L+EKI EL+ K + + D+RDES + V+ Sbjct: 258 PIGKNGEREAIVIDEIPYQVNKAKLVEKIGELVREKTLEGISDLRDESDKSGMRVVIELK 317 Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377 R+ + ++++ ++ ++ ++ F +NM L G+ P+++ L IL E+L HRREV+ RR+ Sbjct: 318 RNENAEVVLNQLYKMTQLQDSFGINMVALVDGQ-PRLLNLKQILSEFLRHRREVVTRRTL 376 Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSR-------------- 420 FR++ I +G +A NIDEII +I+ N + K ++SR Sbjct: 377 FRLKKARHEGHIAEGKAVALSNIDEIIRLIKESANAPEAKEKLLSRPWRSSLVEDMLSRT 436 Query: 421 ----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458 + L+E Q DAIL + LR+L L++ +I E NL+++ Sbjct: 437 DLDLHMMRPEGLPENLGLHSQGYYLSELQADAILRMSLRNLTGLDQEEIVGEYKNLMSKI 496 Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518 +L+ ++ I E+ ++K F RR+ E++ + +I + Sbjct: 497 IDFVDILSKPERVTQIIREELADIKANFGDE-----RRS---EINPFGGDIADEDLIPQR 548 Query: 519 PITVVISNRGWIRSLKSHSVDL--------SALHFKEGDSLKIALHAHTTDRILLLSTDG 570 + V +++ G+I++ + A K+ D ++ A+T D ++ + G Sbjct: 549 EMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDYLMCFTNLG 608 Query: 571 KA-----YTLPAGNLLS-GRGHGEAIQL 592 K Y LP G S GR IQL Sbjct: 609 KCHWIKVYKLPEGGRNSRGRPINNVIQL 636 >gi|206603338|gb|EDZ39818.1| DNA gyrase, A subunit [Leptospirillum sp. Group II '5-way CG'] Length = 816 Score = 372 bits (954), Expect = e-100, Method: Compositional matrix adjust. Identities = 255/746 (34%), Positives = 409/746 (54%), Gaps = 38/746 (5%) Query: 30 YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89 YL Y++S I RA+PD+RDG KPV RR++ AM EMG+ G ++KSARIVG+VIGK HPH Sbjct: 20 YLNYSMSVIVGRALPDVRDGLKPVQRRVLFAMQEMGVRSGGPYRKSARIVGDVIGKYHPH 79 Query: 90 GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDE 149 GD +VYD+ VRL QPF RYPLI GQGNFG++DGD+ AA RYTE R+ ++E ++ ++E Sbjct: 80 GDVAVYDTAVRLVQPFTLRYPLIDGQGNFGSVDGDAPAAMRYTEIRLEALSEEMMAELEE 139 Query: 150 DAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDN 209 + V+F Y+E EP V P++ P LL NG++GIAVGMAT+IP HN+ EI +A LALIDN Sbjct: 140 ETVEFAPNYDESLQEPRVLPARLPLLLLNGSAGIAVGMATNIPPHNITEIIDALLALIDN 199 Query: 210 PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS-WCI 268 P++S++ LL + GPDFPTGG+I+ R I + R GRG +R +EE R I Sbjct: 200 PDLSVDDLLAIVHGPDFPTGGLIM-GRSGIESALRTGRGSIVMRGVADIEESTRADRMAI 258 Query: 269 VVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMES 328 ++ EIPYQV K+RLIE+IAEL+ + + DIRDES D V+ R +P +++ Sbjct: 259 IIREIPYQVNKARLIERIAELVREGALEGIADIRDESDRDGMRVVIDLKRDANPPVVLNR 318 Query: 329 IFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVE 388 ++ + ++T F N L R P ++ L L +L+ R++V+ RR+ FR++ R Sbjct: 319 LYAQTPLQTSFGYNFVALVNQR-PMILSLREALAHFLSFRQDVVTRRTLFRLRKARDRFH 377 Query: 389 ILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVDAILNLRLRSLRKLEEY 445 IL+GL A +D+IIA+IR+ P +V +F+ +E Q AIL++RL+ L LE Sbjct: 378 ILEGLKRAIDLMDQIIALIRSSASPDAARTGLVEQFAFSEIQARAILDMRLQRLTALERD 437 Query: 446 QIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRA 505 +I +E + + ++ +L S +++ IRE E + + G R T + Sbjct: 438 KIDAEYEEVRVLILGLEEILGS----RSRLMAVIRE--EFMALRENYGDARKT--RIVPE 489 Query: 506 DKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL--------SALHFKEGDSLKIALHA 557 D ++MI +P + ++ +G+I+ + + S + KE D++ I L Sbjct: 490 DGEISIESMIPNDPCYITLTYQGYIKRVSHDAYPTQRRGGKGRSGVALKEDDAVIITLTP 549 Query: 558 HTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDI---VTAFVYDSTC 612 + IL + GK Y + A + + G+ I+ + L + + + ++ Sbjct: 550 TAHETILFFTDIGKVYRVKAHEIPEVQRTARGKPIRGFLPLAPEEKVTRMLNVASFEGER 609 Query: 613 KLLVVSSKGNAFIVEESEIIANT---RKGKTFLKVSSEEKMKLVVKVTGD-HVAVVGENR 668 L+ V+ G I++ + + A + + G L + +++ V+ D HV V Sbjct: 610 SLVFVTVNG---IIKRTALSAYSSIRQSGIIALTLREGDRLAQVLVAEADSHVLVATRRG 666 Query: 669 KLLIFSIDQIPEMSR-GKGVR-LQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDL 726 ++F I ++ E R GVR ++ ++ ++D + + + G Y + + Sbjct: 667 MAILFPIHEVTEQGRTASGVRAIRLREEDRVADAEIVTETDPVAVVTEKG--YGKRLDVA 724 Query: 727 LGWLGKRGGVGSLVPKGFPRSGKFLS 752 RGG+G + +G + G +S Sbjct: 725 KFRHQHRGGMGLKISRGAEKIGAVVS 750 >gi|254718873|ref|ZP_05180684.1| DNA topoisomerase IV subunit A [Brucella sp. 83/13] Length = 305 Score = 372 bits (954), Expect = e-100, Method: Compositional matrix adjust. Identities = 168/305 (55%), Positives = 227/305 (74%) Query: 446 QIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRA 505 +I+ E D+L AEK ++ LL SG +QW +I+ EI+ V+E F +T LG+RRTTF Sbjct: 1 EIRKEFDDLTAEKTDLEGLLASGTRQWKKISAEIKAVREKFGPTTRLGKRRTTFAHAPMH 60 Query: 506 DKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILL 565 D + QAMIE+EP+T+V+S +GW+R++K H D S L FKEGD LK+A HA TTD++L Sbjct: 61 DLEDIHQAMIEREPVTIVVSEKGWLRAMKGHLADFSTLSFKEGDKLKLAFHAETTDKLLF 120 Query: 566 LSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFI 625 +T GK +T+ A L GRGHGE I++L+D+ ++QDI+TAFV+D + KLL+VS +GN FI Sbjct: 121 FTTGGKFFTIGANTLPGGRGHGEPIRILVDMENDQDILTAFVHDPSAKLLLVSHEGNGFI 180 Query: 626 VEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGK 685 V ESE +ANTRKGK + V + ++ KL +V+GDH+AVVGENRK+L+F + IPEM+RGK Sbjct: 181 VPESEAVANTRKGKQVMNVKAPDEAKLCQRVSGDHIAVVGENRKMLVFPLSDIPEMTRGK 240 Query: 686 GVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFP 745 GVRLQ YKDGG+ DV F I +GL+W DSA R++NRS+ +L+ W+G R G LVPKGFP Sbjct: 241 GVRLQKYKDGGVCDVRTFAIADGLSWQDSADRTFNRSKEELVEWIGARASAGRLVPKGFP 300 Query: 746 RSGKF 750 RSGKF Sbjct: 301 RSGKF 305 >gi|240128418|ref|ZP_04741079.1| DNA gyrase subunit A [Neisseria gonorrhoeae SK-93-1035] gi|268686814|ref|ZP_06153676.1| DNA gyrase subunit A [Neisseria gonorrhoeae SK-93-1035] gi|268627098|gb|EEZ59498.1| DNA gyrase subunit A [Neisseria gonorrhoeae SK-93-1035] Length = 916 Score = 372 bits (954), Expect = e-100, Method: Compositional matrix adjust. Identities = 225/628 (35%), Positives = 352/628 (56%), Gaps = 65/628 (10%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 +SL + + YL YA+S I RA+PD+RDG KPVHRR+++AM E+ ++ AA+KKSARIV Sbjct: 19 ISLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIV 78 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGD +VYD++VR+AQ F RY LI GQGNFG++DG +AAA RYTE RM ++ Sbjct: 79 GDVIGKYHPHGDSAVYDTIVRMAQNFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMAKI 138 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 + +L ++E+ V+F Y+ + EP+V P++FP LL NG+SGIAVGMAT+IP HN+ + Sbjct: 139 SHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGSSGIAVGMATNIPPHNLTDT 198 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 A L L+D P+ I++L++ I PDFPTG I + E Y+ GRG +R + +E Sbjct: 199 INACLRLLDEPKTEIDELIDIIQAPDFPTGATIY-GLGGVREGYKTGRGRVVIRGKTHIE 257 Query: 260 EVGRGS--WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317 +G+ IV+ EIPYQV K++L+EKI +L+ K + + ++RDES + V+ Sbjct: 258 PIGKNGEREAIVIDEIPYQVNKAKLVEKIGDLVREKTLEGISELRDESDKSGMRVVIELK 317 Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377 R+ + ++++ ++ L+ ++ F +NM VL G+ P+++ L IL E+L HRREV+ RR+ Sbjct: 318 RNENAEVVLNQLYKLTPLQDSFGINMVVLVDGQ-PRLLNLKQILSEFLRHRREVVTRRTL 376 Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSR-------------- 420 FR++ I +G +A NIDEII +I+ N + K +++R Sbjct: 377 FRLKKARHEGHIAEGKAVALSNIDEIIKLIKESPNAAEAKEKLLARPWRSSLVEEMLTRS 436 Query: 421 ----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458 + L+E Q DAIL + LR+L L++ +I NL+ + Sbjct: 437 GLDLEMMRPEGLAANIGLKKQGYYLSEIQADAILRMSLRNLTGLDQKEIIESYKNLMGKI 496 Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518 +L+ ++ I E+ E+K T+ G R + D A + +I + Sbjct: 497 IDFVDILSKPERITQIIRDELEEIK------TNYGDERRSEINPFGGDIA--DEDLIPQR 548 Query: 519 PITVVISNRGWIRSLKSHSVDL--------SALHFKEGDSLKIALHAHTTDRILLLSTDG 570 + V +++ G+I++ + A K+ D ++ A+T D ++ + G Sbjct: 549 EMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDYLMCFTNLG 608 Query: 571 KA-----YTLPAGNLLS-GRGHGEAIQL 592 K Y LP G S GR IQL Sbjct: 609 KCHWIKVYKLPEGGRNSRGRPINNVIQL 636 >gi|7437481|pir||T10970 DNA topoisomerase (ATP-hydrolyzing) (EC 5.99.1.3) chain A - Streptomyces coelicolor gi|436028|gb|AAA65216.1| DNA gyrase [Streptomyces coelicolor A3(2)] gi|1093585|prf||2104262E DNA gyrase Length = 864 Score = 372 bits (954), Expect = e-100, Method: Compositional matrix adjust. Identities = 220/582 (37%), Positives = 335/582 (57%), Gaps = 34/582 (5%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 V+ V L ++ YL YA+S I RA+P +RDG KPVHRR+++AM + G F K A Sbjct: 20 VEPVGLETEMQRSYLDYAMSVIVSRALPVVRDGLKPVHRRVLYAMYDGGYRPERGFYKCA 79 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+V+G HPHGD S+YD+LVRLAQP+ R PL+ GNFG+ D AAA RYTE +M Sbjct: 80 RVVGDVMGNYHPHGDSSIYDALVRLAQPWSMRMPLVDSNGNFGSPGNDPAAAMRYTECKM 139 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 ++ +++ +DE+ VDF D Y+ EP V P++FPNLL NG++GIAVGMAT+IP HN+ Sbjct: 140 APLSMEMVRDIDEETVDFTDNYDGRSQEPTVLPARFPNLLINGSAGIAVGMATNIPPHNL 199 Query: 197 QEICEAALALIDNPEISIEKLLEYII----GPDFPTGGIIVESRESIVESYRLGRGGFRV 252 +E+ A ++N E S E+LL+ +I GPDFPTG ++V R+ I E+YR GRG + Sbjct: 200 REVAAGAQWYLENYEASHEELLDALIERIKGPDFPTGALVV-GRKGIEEAYRTGRGSITM 258 Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV--R 310 RA VEE+ + C+VVTE+PYQ L +KIA+L+ ++ + D+RDE++ R Sbjct: 259 RAVVEVEEI-QNRQCLVVTELPYQTNPDNLAQKIADLVKDGKVGGIADVRDETSSRTGQR 317 Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370 +V+ K R +++ +++ +D+++ F NM L G VP+ + LD ++ W+ H+ E Sbjct: 318 LVIVLK-RDAVAKVVLNNLYKHTDLQSNFGANMLALVDG-VPRTLSLDAFIRHWVNHQIE 375 Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQ 427 V+ RR+ FR++ + R IL+GLL A IDE+IA+IR D + ++ + E Q Sbjct: 376 VIVRRTRFRLRKAEERAHILRGLLKALDAIDEVIALIRRSDTVEIARGGLMDLLEIDEIQ 435 Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487 +AIL ++LR L LE +I E D L A+ + + +L S +Q ++ E+ + E + Sbjct: 436 ANAILEMQLRRLAALERQKIVREHDELQAKITEYNEILASPVRQRGIVSEELTALVEKY- 494 Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVD 539 G R T D + + +I +E I V ++ G+I R+ K Sbjct: 495 -----GDDRKTKLIPYEGDMSI--EDLIAEEDIVVTVTRGGYIKRTKTDDYRAQKRGGKG 547 Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLP 576 + KE D + + T +L + G KAY LP Sbjct: 548 VRGTKLKEDDIVNHFFVSTTHHWLLFFTNKGRVYRAKAYELP 589 >gi|110799869|ref|YP_696748.1| DNA topoisomerase IV subunit A [Clostridium perfringens ATCC 13124] gi|168212895|ref|ZP_02638520.1| DNA topoisomerase, GyrA/ParC subunit family [Clostridium perfringens CPE str. F4969] gi|110674516|gb|ABG83503.1| DNA gyrase/topoisomerase IV, A subunit family protein [Clostridium perfringens ATCC 13124] gi|170715492|gb|EDT27674.1| DNA topoisomerase, GyrA/ParC subunit family [Clostridium perfringens CPE str. F4969] Length = 979 Score = 372 bits (954), Expect = e-100, Method: Compositional matrix adjust. Identities = 212/599 (35%), Positives = 355/599 (59%), Gaps = 27/599 (4%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 + N+ + L + + YL YA+ K+RA+PD+RDG KPVHRRI++ + + Sbjct: 11 DNNIIRMPLEEVMPDNYLPYAVEVAKDRALPDVRDGLKPVHRRILYGAYMLKAFPDKPYY 70 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSARIVG+++GK HPHGD SVYD++V LAQ F R PLI G GN+G+IDGD AAA RYTE Sbjct: 71 KSARIVGDILGKYHPHGDSSVYDAMVILAQNFSTRAPLIDGHGNWGSIDGDGAAAMRYTE 130 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 AR++ ++ +L+ ++++ VD Y++ + EP V P+++PNLL NGT GIAVG++T+IP Sbjct: 131 ARLSSISMEMLRDIEKNVVDMVPNYSDSEMEPKVLPARYPNLLVNGTFGIAVGLSTNIPP 190 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN++E+ + LA IDN EI+ +L+ YI GPD PTGG+++ ++++ +Y G G +R Sbjct: 191 HNLREVIDGTLAYIDNNEITTRELMNYIKGPDLPTGGVLI-GEKTLLSAYETGEGKVTLR 249 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR----IPLLEDIRDESAED- 308 A+ +E + G IV+TE PY+ K+R+++ I+++ KR + + DIRDES Sbjct: 250 AKAKIETLENGRLGIVITEFPYRRNKARILQTISDMTGDKRHAKALDGIVDIRDESDRTG 309 Query: 309 VRIVLFPKNRSLDPDL---LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365 +R V+ K +++D D+ +++ ++ +D++ NM L+ G+ P+ M L I+ ++ Sbjct: 310 IRAVIEFK-KAVDHDMADKVLKYLYKKTDLQGNISFNMVALADGK-PETMGLKTIISHYV 367 Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFS 422 H+++V+ RR+ ++ ++R I++G + A +DE+IA IR K +VS+F Sbjct: 368 NHQKDVVTRRTKRELEVAEKRFHIVEGFIKAIGIMDEVIATIRASKSKKDAHENLVSKFG 427 Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482 T+ Q +AIL L L L LE + E L + + + +L + I E++EV Sbjct: 428 FTDLQAEAILELMLYRLTGLEIKVFQKEHKELSKKIKALRKILENESVLLGVIKDELKEV 487 Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--LKSH---S 537 E++ RRT E K L++ +I E + V +SN G+I+ LK++ + Sbjct: 488 AEVYG-----DERRTALIEDESEAKIDLEE-LIVAEDVMVTLSNEGFIKKLPLKTYNRSN 541 Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLI 594 VD + + ++EGD LK + ++T D + + + G Y + ++ + GE ++ LI Sbjct: 542 VDENEIEYREGDYLKFLIKSNTKDTLAIFTDKGTVYQIKCNSVADKKWKDKGERLEDLI 600 >gi|325860076|ref|ZP_08173202.1| DNA gyrase, A subunit [Prevotella denticola CRIS 18C-A] gi|327314678|ref|YP_004330115.1| DNA gyrase subunit A [Prevotella denticola F0289] gi|325482361|gb|EGC85368.1| DNA gyrase, A subunit [Prevotella denticola CRIS 18C-A] gi|326944311|gb|AEA20196.1| DNA gyrase, A subunit [Prevotella denticola F0289] Length = 860 Score = 372 bits (954), Expect = e-100, Method: Compositional matrix adjust. Identities = 229/679 (33%), Positives = 374/679 (55%), Gaps = 41/679 (6%) Query: 6 ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65 + + T+ ++ + +++ ++ Y+ Y++S I RA+PD+RDGFKPVHRRI+ M +G Sbjct: 1 MDENQTIDQDRIMKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILFGMRGIG 60 Query: 66 LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125 +KK AR+VGEV+GK HPHGD SVY +LVR+ Q + RY L+ GQGNFG++DGDS Sbjct: 61 NFSNQPYKKCARVVGEVLGKYHPHGDSSVYGALVRMGQDWNMRYKLVDGQGNFGSVDGDS 120 Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185 AAA RYTE R++++ E I+ +++D VD + +++ EP V P+K PNLL NG +GIAV Sbjct: 121 AAAMRYTECRLSKMGEHIMDDIEKDTVDMVNNFDDTLREPAVMPTKIPNLLVNGGNGIAV 180 Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245 GMAT+IP+HN+ E+ + A IDNPEI+ + L+E+I PDFPTG I + + ++Y Sbjct: 181 GMATNIPTHNLGEVIDGCCAYIDNPEITTDGLMEFIPAPDFPTGAYIY-GLQGVKDAYET 239 Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305 GRG +RA+ +E IVVTEIPY V K +LIE IA+L+ ++ + ++ DE+ Sbjct: 240 GRGRVVMRAKAEIES-DENHDKIVVTEIPYGVNKQQLIEYIADLVKEGKLEGISNVNDET 298 Query: 306 A-EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364 + +RIV+ K R + ++++ +F ++ +++ F +N L GR P+++ L +K + Sbjct: 299 GRQGMRIVVDVK-RDANANVILNKLFKMTALQSSFSVNCIALVGGR-PRLLSLRECIKYF 356 Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRF 421 + HR +V RR+ F ++ R IL+ L+ A NIDE++ +IR P + RF Sbjct: 357 VEHRHDVTIRRTRFDLKKAQERAHILEALIKACDNIDEVVHLIRASKTPSEAQKNLEKRF 416 Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481 E Q AI+++RL L L Q+ E D L+ + + +L++ ++ + E++E Sbjct: 417 GFDELQSKAIVDMRLSQLTGLRLDQLHQEFDELMQTIKDLQEILDNPERCREVMKAELQE 476 Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR-----SLKSH 536 VKE + RRT E+ + + +P+ + IS+ G+I+ K Sbjct: 477 VKEKYGDE-----RRT---EIIPDEHEFNAEDFYPNDPVVITISHLGYIKRTPLADFKEQ 528 Query: 537 S---VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQ 591 + V +E D + A +L + G+ Y + ++ G G AIQ Sbjct: 529 ARGGVGSKGARTREKDFTEYIYPATMHQTMLFFTRKGRCYWMKCYDIPEGDKNAKGRAIQ 588 Query: 592 LLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG---KTFLKVSSEE 648 ++ L D V AF L + +AF+ + ++ T++G KT L+ S Sbjct: 589 NMLSLEAG-DAVNAF-------LRIRGLDDDAFL-DSHFVVFATKQGIVKKTSLRAYSRP 639 Query: 649 KMKLVVKVT---GDHVAVV 664 + V+ + GD V V Sbjct: 640 RTNGVIAININEGDEVVDV 658 >gi|240013958|ref|ZP_04720871.1| DNA gyrase subunit A [Neisseria gonorrhoeae DGI18] gi|240016400|ref|ZP_04722940.1| DNA gyrase subunit A [Neisseria gonorrhoeae FA6140] gi|240113113|ref|ZP_04727603.1| DNA gyrase subunit A [Neisseria gonorrhoeae MS11] gi|240121527|ref|ZP_04734489.1| DNA gyrase subunit A [Neisseria gonorrhoeae PID24-1] gi|240125906|ref|ZP_04738792.1| DNA gyrase subunit A [Neisseria gonorrhoeae SK-92-679] gi|254493910|ref|ZP_05107081.1| DNA gyrase subunit A [Neisseria gonorrhoeae 1291] gi|260440316|ref|ZP_05794132.1| DNA gyrase subunit A [Neisseria gonorrhoeae DGI2] gi|268599197|ref|ZP_06133364.1| DNA gyrase subunit A [Neisseria gonorrhoeae MS11] gi|268684504|ref|ZP_06151366.1| DNA gyrase subunit A [Neisseria gonorrhoeae SK-92-679] gi|291043610|ref|ZP_06569326.1| DNA gyrase subunit A [Neisseria gonorrhoeae DGI2] gi|226512950|gb|EEH62295.1| DNA gyrase subunit A [Neisseria gonorrhoeae 1291] gi|268583328|gb|EEZ48004.1| DNA gyrase subunit A [Neisseria gonorrhoeae MS11] gi|268624788|gb|EEZ57188.1| DNA gyrase subunit A [Neisseria gonorrhoeae SK-92-679] gi|291012073|gb|EFE04062.1| DNA gyrase subunit A [Neisseria gonorrhoeae DGI2] Length = 916 Score = 372 bits (954), Expect = e-100, Method: Compositional matrix adjust. Identities = 226/628 (35%), Positives = 352/628 (56%), Gaps = 65/628 (10%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 VSL + + YL YA+S I RA+PD+RDG KPVHRR+++AM E+ ++ AA+KKSARIV Sbjct: 19 VSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIV 78 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGD +VYD++VR+AQ F RY LI GQGNFG++DG +AAA RYTE RM ++ Sbjct: 79 GDVIGKYHPHGDSAVYDTIVRMAQNFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMAKI 138 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 + +L ++E+ V+F Y+ + EP+V P++FP LL NG+SGIAVGMAT+IP HN+ + Sbjct: 139 SHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGSSGIAVGMATNIPPHNLTDT 198 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 A L L+D P+ I++L++ I PDFPTG I + E Y+ GRG +R + +E Sbjct: 199 INACLRLLDEPKTEIDELIDIIQAPDFPTGATIY-GLGGVREGYKTGRGRVVMRGKTHIE 257 Query: 260 EVGRGS--WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317 +G+ IV+ EIPYQV K++L+EKI +L+ K + + ++RDES + V+ Sbjct: 258 PIGKNGEREAIVIDEIPYQVNKAKLVEKIGDLVREKTLEGISELRDESDKSGMRVVIELK 317 Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377 R+ + ++++ ++ L+ ++ F +NM VL G+ P+++ L IL E+L HRREV+ RR+ Sbjct: 318 RNENAEVVLNQLYKLTPLQDSFGINMVVLVDGQ-PRLLNLKQILSEFLRHRREVVTRRTL 376 Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSR-------------- 420 FR++ I +G +A NIDEII +I+ N + K +++R Sbjct: 377 FRLKKARHEGHIAEGKAVALSNIDEIIKLIKESPNAAEAKEKLLARPWRSSLVEEMLTRS 436 Query: 421 ----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458 + L+E Q DAIL + LR+L L++ +I NL+ + Sbjct: 437 GLDLEMMRPEGLAANIGLKKQGYYLSEIQADAILRMSLRNLTGLDQKEIIESYKNLMGKI 496 Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518 +L+ ++ I E+ E+K T+ G R + D A + +I + Sbjct: 497 IDFVDILSKPERITQIIRDELEEIK------TNYGDERRSEINPFGGDIA--DEDLIPQR 548 Query: 519 PITVVISNRGWIRSLKSHSVDL--------SALHFKEGDSLKIALHAHTTDRILLLSTDG 570 + V +++ G+I++ + A K+ D ++ A+T D ++ + G Sbjct: 549 EMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDYLMCFTNLG 608 Query: 571 KA-----YTLPAGNLLS-GRGHGEAIQL 592 K Y LP G S GR IQL Sbjct: 609 KCHWIKVYKLPEGGRNSRGRPINNVIQL 636 >gi|168208770|ref|ZP_02634395.1| DNA topoisomerase, GyrA/ParC subunit family [Clostridium perfringens B str. ATCC 3626] gi|170713041|gb|EDT25223.1| DNA topoisomerase, GyrA/ParC subunit family [Clostridium perfringens B str. ATCC 3626] Length = 979 Score = 372 bits (954), Expect = e-100, Method: Compositional matrix adjust. Identities = 212/599 (35%), Positives = 355/599 (59%), Gaps = 27/599 (4%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 + N+ + L + + YL YA+ K+RA+PD+RDG KPVHRRI++ + + Sbjct: 11 DNNIIRMPLEEVMPDNYLPYAVEVAKDRALPDVRDGLKPVHRRILYGAYMLKAFPDKPYY 70 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSARIVG+++GK HPHGD SVYD++V LAQ F R PLI G GN+G+IDGD AAA RYTE Sbjct: 71 KSARIVGDILGKYHPHGDSSVYDAMVILAQNFSTRAPLIDGHGNWGSIDGDGAAAMRYTE 130 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 AR++ ++ +L+ ++++ VD Y++ + EP V P+++PNLL NGT GIAVG++T+IP Sbjct: 131 ARLSSISMEMLRDIEKNVVDMVPNYSDSEMEPKVLPARYPNLLVNGTFGIAVGLSTNIPP 190 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN++E+ + LA IDN EI+ +L+ YI GPD PTGG+++ ++++ +Y G G +R Sbjct: 191 HNLREVIDGTLAYIDNNEITTRELMNYIKGPDLPTGGVLI-GEKTLLSAYETGEGKVTLR 249 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR----IPLLEDIRDESAED- 308 A+ +E + G IV+TE PY+ K+R+++ I+++ KR + + DIRDES Sbjct: 250 AKAKIETLENGRLGIVITEFPYRRNKARILQTISDMTGDKRHAKALDGIVDIRDESDRTG 309 Query: 309 VRIVLFPKNRSLDPDL---LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365 +R V+ K +++D D+ +++ ++ +D++ NM L+ G+ P+ M L I+ ++ Sbjct: 310 IRAVIEFK-KAVDHDMADKVLKYLYKKTDLQGNISFNMVALADGK-PETMGLKTIISHYV 367 Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFS 422 H+++V+ RR+ ++ ++R I++G + A +DE+IA IR K +VS+F Sbjct: 368 NHQKDVVTRRTKRELEVAEKRFHIVEGFIKAIGIMDEVIATIRASKSKKYAHENLVSKFG 427 Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482 T+ Q +AIL L L L LE + E L + + + +L + I E++EV Sbjct: 428 FTDLQAEAILELMLYRLTGLEIKVFQKEHKELSKKIKALRKILENESVLLGVIKDELKEV 487 Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--LKSH---S 537 E++ RRT E K L++ +I E + V +SN G+I+ LK++ + Sbjct: 488 AEVYG-----DERRTALIEDESEAKIDLEE-LIVAEDVMVTLSNEGFIKKIPLKTYNRSN 541 Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLI 594 VD + + ++EGD LK + ++T D + + + G Y + ++ + GE ++ LI Sbjct: 542 VDENEIEYREGDYLKFLIKSNTKDTLAIFTDKGTVYQIKCNSVADKKWKDKGERLEDLI 600 >gi|332527566|ref|ZP_08403613.1| DNA gyrase subunit A [Rubrivivax benzoatilyticus JA2] gi|332111969|gb|EGJ11946.1| DNA gyrase subunit A [Rubrivivax benzoatilyticus JA2] Length = 894 Score = 371 bits (953), Expect = e-100, Method: Compositional matrix adjust. Identities = 220/609 (36%), Positives = 340/609 (55%), Gaps = 59/609 (9%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 +SL + YL YA+S I RA+PD RDG KPVHRR+++AM E+ + +KKSARIV Sbjct: 11 ISLEEEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMHELSNHWNRPYKKSARIV 70 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGD +VYD++VR+AQ F R+ L+ GQGNFG++DGDSAAA RYTE R+ ++ Sbjct: 71 GDVIGKYHPHGDTAVYDTIVRMAQDFSLRHMLVDGQGNFGSVDGDSAAAMRYTEIRLAKI 130 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A +L+ +D++ VDF Y+ + EP V P++ PNLL NG++GIAVGMAT+IP HN+ EI Sbjct: 131 AHEMLEDIDKETVDFAPNYDGSEKEPTVLPARLPNLLVNGSAGIAVGMATNIPPHNLNEI 190 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 +A L L+ PE +IE+L+E + PDFPT GII E + E YR GRG +RA+ E Sbjct: 191 VDACLHLLKVPEATIEELMEIVPAPDFPTAGIIY-GLEGVREGYRTGRGRVVMRAKCHFE 249 Query: 260 EVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318 ++ RG I+V EIPYQV K L+E+IAEL+ K+I + I+DES + V+ R Sbjct: 250 DIDRGQRQAIIVDEIPYQVNKKTLLERIAELVNEKKIEGISHIQDESDKSGMRVVIELKR 309 Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378 P++++ +++ + ++ F +NM L G+ P++ L +L +L HRREV+ RR+ + Sbjct: 310 GEVPEVVLNNLYKQTQLQDSFGINMVALVDGQ-PRLCNLKQLLDIFLEHRREVVTRRTVY 368 Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR--------------- 420 ++ R +L+GL +A NIDE I I+ P K ++S+ Sbjct: 369 ELRKARERGHVLEGLAVALANIDEFIETIKTSPTPPVAKAALMSKAWDSSMVREMLARAE 428 Query: 421 --------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNL 454 + L+E+Q IL +RL+ L LE+ +I E + Sbjct: 429 ESTAGGRAAYRPEGLPAGYGLQADGLYRLSEDQAQEILQMRLQRLTGLEQDKIIGEYREV 488 Query: 455 LAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAM 514 +++ + +L ++ + E+ +++ F ++ +G RR+ + R + + Sbjct: 489 MSQIADLLDILARPERVTAILVEELNALRQEFGQAK-VGARRSV---IERNALELGTEDL 544 Query: 515 IEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLL 566 I + V +S+ G+I R+ + A K+ D + A+T D IL Sbjct: 545 ITPTDMVVTLSHTGYIKSQPLTEYRAQRRGGRGKQATQTKDDDWIDQLFIANTHDWILCF 604 Query: 567 STDGKAYTL 575 S G+ Y L Sbjct: 605 SDRGRVYWL 613 >gi|315658359|ref|ZP_07911231.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Staphylococcus lugdunensis M23590] gi|315496688|gb|EFU85011.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Staphylococcus lugdunensis M23590] Length = 800 Score = 371 bits (953), Expect = e-100, Method: Compositional matrix adjust. Identities = 216/688 (31%), Positives = 393/688 (57%), Gaps = 22/688 (3%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 E ++ +SL + +R+ Y+ I+ERA+PD+RDG KPV RRI++AM G + F+K Sbjct: 3 EIIQDLSLEDVIGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTYDKNFRK 62 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 SA+ VG+VIG+ HPHGD SVYD++VRL+Q + R+ L+ GN G+ID D AA RYTEA Sbjct: 63 SAKTVGDVIGQYHPHGDSSVYDAMVRLSQDWKLRHVLVEMHGNNGSIDNDPPAAMRYTEA 122 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 +++Q+AE +L+ ++++ V F Y++ EP+V P++FPNLL NG++GI+ G AT IP H Sbjct: 123 KLSQLAEELLRDINKETVSFVSNYDDTTLEPMVLPARFPNLLVNGSTGISAGYATDIPPH 182 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 N+ E+ +A L IDNP IS+ +L++YI GPDFPTGGII + + I ++Y G+G VR+ Sbjct: 183 NLAEVIQATLKYIDNPNISVSQLMKYIQGPDFPTGGII-QGVDGIKKAYETGKGKIVVRS 241 Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314 + E + G +VVTE+PY+V KS L+++I EL K++ + ++RDE+ + Sbjct: 242 KVETEALRNGRQQLVVTEVPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRIAI 301 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 + + + + +F SD++ + NM +S GR P++M + I+ +L H+ EV+ Sbjct: 302 ELKKEANSEAIKNYLFKNSDLQISYNFNMVAISDGR-PKLMGIRQIIDSYLNHQIEVVVN 360 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAI 431 R+ F + ++R+ I++GL+ A +DE+IA+IR N+ K +V+ + T+ Q +AI Sbjct: 361 RTKFDLDHAEKRMHIVEGLMKALSILDEVIALIRESKNKRDAKDNLVATYGFTDAQAEAI 420 Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491 + L+L L + ++K+E L ++ +L++ I E++++++ F Sbjct: 421 VMLQLYRLTNTDIVELKNEHAELSERIKEYRHILDNHDALLTVIKNELKDIRKRFKSE-- 478 Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD---LSALHFKEG 548 R + E A+ ++ M+ E + + ++ +G+I+ + S + +S + K+G Sbjct: 479 ----RLSAIEAEIAEIKIDKEVMVPSEDVIMSVTAQGYIKRTSTRSFNASGVSEIGLKQG 534 Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDIVTAF 606 D L +T D IL+ + G+ +P L R G+ + L+ + ++ I+ + Sbjct: 535 DRLLKYQEVNTQDTILVFTNKGRYLFIPVHKLADTRWKELGQHVSQLVAIEEDEYIINVY 594 Query: 607 VYDSTCK--LLVVSSKGNAFIVEESEIIANTRKGKTF--LKVSSEEKMKLVVKVTGDHVA 662 + + +++++ + + TR K +KV ++++ V ++T D + Sbjct: 595 NEKNFQQEAFYIMATRNGMIKKSHAGLFKTTRYTKPLVAMKVKPQDEIISVQRLTEDQII 654 Query: 663 VVGENRKL-LIFSIDQIPEMS-RGKGVR 688 V ++ + L ++ +++ + R GV+ Sbjct: 655 TVLTHKGMSLTYNTNELSDTGLRAAGVK 682 >gi|169343779|ref|ZP_02864778.1| DNA gyrase/topoisomerase IV, A subunit [Clostridium perfringens C str. JGS1495] gi|169298339|gb|EDS80429.1| DNA gyrase/topoisomerase IV, A subunit [Clostridium perfringens C str. JGS1495] Length = 979 Score = 371 bits (953), Expect = e-100, Method: Compositional matrix adjust. Identities = 212/599 (35%), Positives = 355/599 (59%), Gaps = 27/599 (4%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 + N+ + L + + YL YA+ K+RA+PD+RDG KPVHRRI++ + + Sbjct: 11 DNNIIRMPLEEVMPDNYLPYAVEVAKDRALPDVRDGLKPVHRRILYGAYMLKAFPDKPYY 70 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSARIVG+++GK HPHGD SVYD++V LAQ F R PLI G GN+G+IDGD AAA RYTE Sbjct: 71 KSARIVGDILGKYHPHGDSSVYDAMVILAQNFSTRAPLIDGHGNWGSIDGDGAAAMRYTE 130 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 AR++ ++ +L+ ++++ VD Y++ + EP V P+++PNLL NGT GIAVG++T+IP Sbjct: 131 ARLSSISMEMLRDIEKNVVDMVPNYSDSEMEPKVLPARYPNLLVNGTFGIAVGLSTNIPP 190 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN++E+ + LA IDN EI+ +L+ YI GPD PTGG+++ ++++ +Y G G +R Sbjct: 191 HNLREVIDGTLAYIDNNEITTRELMNYIKGPDLPTGGVLI-GEKTLLSAYETGEGKVTLR 249 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR----IPLLEDIRDESAED- 308 A+ +E + G IV+TE PY+ K+R+++ I+++ KR + + DIRDES Sbjct: 250 AKAKIETLENGRLGIVITEFPYRRNKARILQTISDMTGDKRHAKALDGIVDIRDESDRTG 309 Query: 309 VRIVLFPKNRSLDPDL---LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365 +R V+ K +++D D+ +++ ++ +D++ NM L+ G+ P+ M L I+ ++ Sbjct: 310 IRAVIEFK-KAVDHDMADKVLKYLYKKTDLQGNISFNMVALADGK-PETMGLKTIISHYV 367 Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFS 422 H+++V+ RR+ ++ ++R I++G + A +DE+IA IR K +VS+F Sbjct: 368 NHQKDVVTRRTKRELEVAEKRFHIVEGFIKAIGIMDEVIATIRASKSKKDAHENLVSKFG 427 Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482 T+ Q +AIL L L L LE + E L + + + +L + I E++EV Sbjct: 428 FTDLQAEAILELMLYRLTGLEIKVFQKEHKELSKKIKALRKILENESVLLGVIKDELKEV 487 Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--LKSH---S 537 E++ RRT E K L++ +I E + V +SN G+I+ LK++ + Sbjct: 488 AEVYG-----DERRTALIEDESEAKIDLEE-LIVAEDVMVTLSNEGFIKKIPLKTYNRSN 541 Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLI 594 VD + + ++EGD LK + ++T D + + + G Y + ++ + GE ++ LI Sbjct: 542 VDENEIEYREGDYLKFLIKSNTKDTLAIFTDKGTVYQIKCNSVSDKKWKDKGERLEDLI 600 >gi|294012117|ref|YP_003545577.1| DNA gyrase subunit A [Sphingobium japonicum UT26S] gi|292675447|dbj|BAI96965.1| DNA gyrase subunit A [Sphingobium japonicum UT26S] Length = 910 Score = 371 bits (953), Expect = e-100, Method: Compositional matrix adjust. Identities = 252/730 (34%), Positives = 385/730 (52%), Gaps = 87/730 (11%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 ++ +S+ ++ YL YA+S I RA+PD+RDG KPVHRRI+ + E G ++KS Sbjct: 12 DISPISIVEEMKASYLDYAMSVIVARALPDVRDGLKPVHRRILFSAHESGFTHNKPYRKS 71 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 ARIVG+VIGK HPHGD ++Y +L R+ Q + R PLI GQGNFG++D D AA RYTEAR Sbjct: 72 ARIVGDVIGKYHPHGDSAIYHALARMTQDWSMRVPLIDGQGNFGSMDPDPPAAMRYTEAR 131 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 + +V +L +D+D VDF+ Y+ +SEP V P++FPNLL NG GIAVGMAT+IP HN Sbjct: 132 LAKVTNALLDDLDKDTVDFQPNYDASESEPQVLPARFPNLLVNGAGGIAVGMATNIPPHN 191 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 + E+ A LA IDN I+I++L++ + GPDFPT +I+ + +Y GRG +RAR Sbjct: 192 LGEVIRACLAYIDNTGITIDELIQIVPGPDFPTAPLIL-GQSGARSAYHTGRGSIMMRAR 250 Query: 256 WCVEEVGRGSW-CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVL 313 +EE GRG IV+T IPYQV K+ L+EKIAE KRI + DIRDES+ E VRIV+ Sbjct: 251 HEIEE-GRGDRRSIVLTAIPYQVGKNGLVEKIAEAAKDKRIEGISDIRDESSREGVRIVM 309 Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373 K R P++++ ++ + ++ FP NM + GR P+++ + I++ ++ R EV+ Sbjct: 310 DLK-RDATPEVVLNQLWRNTPAQSSFPANMLAIRGGR-PELLNIRDIIEAFVRFREEVIT 367 Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSR---------- 420 RR+ + + R IL GL+IA N+DE++ IIR P + +++R Sbjct: 368 RRTKYELNKARDRAHILLGLVIAVTNLDEVVRIIRGSASPAEARETLLARDWPVAEIAPY 427 Query: 421 ---------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLL 465 + L++ QV AIL+LRL L L +I +EL L A + ++L Sbjct: 428 LKLVEAIETEVGGDSYRLSDTQVRAILDLRLHRLTALGRDEIGNELAELAAAIAEYLAIL 487 Query: 466 NSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVIS 525 + + + E ++ F+ E++ A + +IE+E + V ++ Sbjct: 488 GDRVKLYAVMREEFEAIERDFATP--------RLSEITAAADGIDDEDLIEREEMVVTVT 539 Query: 526 NRGWIRSLKSHSVDL--------SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPA 577 +G+I+ S S + K+ D++ T +L ST GK Y L Sbjct: 540 VQGYIKRTPLESFRAQARGGKGRSGMTTKDEDAITELFVTSTHTPVLFFSTAGKVYRLKV 599 Query: 578 GNLLSG----RGH----------GEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNA 623 L G RG GE IQ ++ L ++ DS L V+ + N Sbjct: 600 WRLPEGGPATRGRPMVNLLPLSPGETIQTVLPLPEDE--------DSWKDLHVMFATANG 651 Query: 624 FIVEES-EIIAN-TRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEM 681 + S + AN GK ++ E +L+ VA++ E +L+ + Sbjct: 652 TVRRNSMDAFANIPSNGKIAMRFDDESDDRLI------GVALLTEEDDVLLAT------- 698 Query: 682 SRGKGVRLQS 691 +GK +R Q+ Sbjct: 699 RQGKAIRFQA 708 >gi|261392342|emb|CAX49878.1| DNA gyrase subunit A [Neisseria meningitidis 8013] Length = 916 Score = 371 bits (953), Expect = e-100, Method: Compositional matrix adjust. Identities = 228/630 (36%), Positives = 351/630 (55%), Gaps = 69/630 (10%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 VSL + + YL YA+S I RA+PD+RDG KPVHRR+++AM E+ ++ AA+KKSARIV Sbjct: 19 VSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIV 78 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGD +VYD++VR+AQ F RY LI GQGNFG++DG +AAA RYTE RM ++ Sbjct: 79 GDVIGKYHPHGDTAVYDTIVRMAQNFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMAKI 138 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 + +L ++E+ V+F Y+ + EP+V P++FP LL NG+SGIAVGMAT+IP HN+ + Sbjct: 139 SHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGSSGIAVGMATNIPPHNLSDT 198 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 A L L+D P+ I++L++ I PDFPTG I + E Y+ GRG +R + +E Sbjct: 199 VNACLRLLDAPDTEIDELIDIIQAPDFPTGATIY-GLSGVREGYKTGRGRVVMRGKTHIE 257 Query: 260 EVGRGS--WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317 +GR IV+ EIPYQV K++L+EKI +L+ K + + ++RDES + V+ Sbjct: 258 PIGRNGEREAIVIDEIPYQVNKAKLVEKIGDLVREKTLEGISELRDESDKSGMRVVIELK 317 Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377 R+ + ++++ ++ L+ ++ F +NM VL G+ P+++ L IL E+L HRREV+ RR+ Sbjct: 318 RNENAEVVLNQLYKLTPLQDSFGINMVVLVDGQ-PRLLNLKQILSEFLRHRREVVTRRTL 376 Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV------------------MVS 419 FR++ I +G +A NIDEII +I+ + P V M++ Sbjct: 377 FRLKKARHEGHIAEGKAVALSNIDEIIRLIK--ESPNAVEAKDKLLAHPWRSSLVEEMLT 434 Query: 420 R-----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLA 456 R + L+E Q DAIL + LR+L L+ +I NL+ Sbjct: 435 RSGLDLEMMRPEGLAANIGLKEQGYYLSEIQADAILRMSLRNLTGLDREEIVESYKNLMG 494 Query: 457 EKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE 516 + +L+ ++ I E+ E+K T+ G R + D A + +I Sbjct: 495 KIIDFVDILSKPERITRIIRDELEEIK------TNYGDERRSEINPFGGDIA--DEDLIP 546 Query: 517 KEPITVVISNRGWIRSLKSHSVDL--------SALHFKEGDSLKIALHAHTTDRILLLST 568 + + V +++ G+I++ + A K+ D ++ A+T D ++ + Sbjct: 547 QREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDYLMCFTN 606 Query: 569 DGKA-----YTLPAGNLLS-GRGHGEAIQL 592 GK Y LP G S GR IQL Sbjct: 607 LGKCHWIKVYKLPEGGRNSRGRPINNVIQL 636 >gi|315646516|ref|ZP_07899634.1| DNA topoisomerase IV, A subunit [Paenibacillus vortex V453] gi|315278159|gb|EFU41479.1| DNA topoisomerase IV, A subunit [Paenibacillus vortex V453] Length = 819 Score = 371 bits (953), Expect = e-100, Method: Compositional matrix adjust. Identities = 213/610 (34%), Positives = 355/610 (58%), Gaps = 24/610 (3%) Query: 28 ERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLH 87 +R+ Y+ I++RAIPD+RDG KPV RRI++AM + G ++KSA+ VG+V+G H Sbjct: 18 DRFGRYSKYIIQDRAIPDVRDGLKPVQRRILYAMYDSGNTPDKPYRKSAKTVGDVMGNYH 77 Query: 88 PHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGV 147 PHGD S+Y+ +VR+AQP+ + L+ G GN+G+ D D AAA RYTEAR++ +A +L+ + Sbjct: 78 PHGDSSIYEGMVRMAQPWKMGHVLVDGHGNWGSQDDDPAAAMRYTEARLSSIAMELLRDI 137 Query: 148 DEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALI 207 ++ V F+D ++ EPVV PS++PNLL NG SGI+ G AT IP HN++E+ +A +A++ Sbjct: 138 EKRTVLFKDNFDNTAKEPVVLPSRYPNLLVNGASGISAGFATEIPPHNLREVIDACIAVM 197 Query: 208 DNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWC 267 PEI + +++ +I GPDFPT GII+ E I+++YR G+G +R++ +E + G Sbjct: 198 QKPEIELAEIMTFIKGPDFPTSGIIM-GGEGILDAYRTGKGRVYLRSKTDIESLRGGKQQ 256 Query: 268 IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLFPKNRSLDPDLLM 326 IV+TEIPYQV KSRL+ + + + K++ + ++RDES E +RIV+ K + D + ++ Sbjct: 257 IVITEIPYQVVKSRLVTAMENIRLEKKVEGIAEVRDESGREGLRIVVELK-KDADANGIL 315 Query: 327 ESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRR 386 + +D++ + NM V + + PQ + L +L ++ H+REV+ R+ F ++ + R Sbjct: 316 AYLLKKTDLQITYNFNM-VAIVNKTPQQLGLKAMLTAYIEHQREVVTNRTQFELEKAEDR 374 Query: 387 VEILKGLLIAYLNIDEIIAII---RNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLE 443 +L+GL+ A +DE+IA I +N + + F TE Q D+IL L+L L LE Sbjct: 375 AHVLEGLVKALNILDEVIAAIKASKNRQDAQNNLQWMFGFTERQADSILTLQLYRLTNLE 434 Query: 444 EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVS 503 + ++ ELD L + E + ++L+S K+ I E+ E++E + RR+ E Sbjct: 435 IHSLQKELDELTKKIEGLRAILDSDKKLIAVIRKELLEIREKYGIE-----RRSVIQEEV 489 Query: 504 RADKATLQQAMIEKEPITVVISNRGWIR-----SLKSHSVDLSALHFKEGDSLKIALHAH 558 K L + ++ E + V +SN G+I+ S +L + K+GD + + Sbjct: 490 EEIKVNL-EVLVNAEDVLVTLSNEGYIKRTSMLSFTRSGGELGSSGVKDGDYITRLFEVN 548 Query: 559 TTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAF----VYDSTC 612 T + +L+ ++ G+ + LP + + G AI +I + +IV+ D Sbjct: 549 TLENLLIFTSRGQYFLLPVHQIPEYKWKDAGTAIVNVIQVPKEDNIVSVIPVSNFEDPGK 608 Query: 613 KLLVVSSKGN 622 L+ VS KG Sbjct: 609 SLVFVSRKGQ 618 >gi|134096627|ref|YP_001102288.1| DNA gyrase subunit A [Saccharopolyspora erythraea NRRL 2338] gi|291005719|ref|ZP_06563692.1| DNA gyrase subunit A [Saccharopolyspora erythraea NRRL 2338] gi|133909250|emb|CAL99362.1| DNA gyrase subunit A [Saccharopolyspora erythraea NRRL 2338] Length = 831 Score = 371 bits (953), Expect = e-100, Method: Compositional matrix adjust. Identities = 231/646 (35%), Positives = 358/646 (55%), Gaps = 47/646 (7%) Query: 9 SNTLVEEN--VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66 + TL E+ ++ V ++ ++ Y+ YA+S I RA+PD+RDG KPVHRR++++M + G Sbjct: 2 TETLPPEHGRIEPVDIQQEMQNSYINYAMSVIVARALPDVRDGLKPVHRRVLYSMYDSGY 61 Query: 67 DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126 + K +R+VG+V+G HPHGD S+YD+LVRLAQP+ R+PLI GQGNFG+ D A Sbjct: 62 RPDRGYVKCSRVVGDVMGNYHPHGDSSIYDTLVRLAQPWSMRHPLIDGQGNFGSPGNDPA 121 Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186 AA RYTE+R+ +A +L ++ED VDF D Y+ EP V P++ PNLL NG GIAVG Sbjct: 122 AAMRYTESRLDPLAMHMLADIEEDTVDFSDNYDGRSQEPDVLPARIPNLLVNGGGGIAVG 181 Query: 187 MATSIPSHNVQEICEAALALIDNPEISIEKLLEYII----GPDFPTGGIIVESRESIVES 242 MAT+IP HN++E+ + + ++NPE E LLE +I GPDFPT G+I+ + +I ++ Sbjct: 182 MATNIPPHNLREVADGVVWALENPEADDEALLEALIERIKGPDFPTRGLIMGT-NAIADA 240 Query: 243 YRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302 YR GRG ++RA VEE +G +VVTE+PYQV LIE IA + ++ + DI Sbjct: 241 YRTGRGSIKMRAVVDVEEDTKGRTSLVVTELPYQVNPDNLIESIAAMHREGKLTGISDIA 300 Query: 303 DESA--EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360 DES +RIV+ K S+ P +++ +++ + ++ F +NM L G VP+ + LD + Sbjct: 301 DESNSRRGMRIVITLKRDSI-PKVVLNNLYKHTQLQYTFGVNMLALVEG-VPRTLRLDQV 358 Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVM 417 ++ ++ H+ EV+ RR+ FR++ + R IL+GL+ A +DE+IA+IR D + + Sbjct: 359 IRHYVKHQVEVIVRRTRFRLRKAEERAHILRGLVKALDMLDEVIALIRRSPTVDDARTGL 418 Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477 + + E Q +AIL ++LR L LE +I +L + E E + +L+ ++Q I Sbjct: 419 IELLEVDEVQANAILEMQLRRLAALERQKIVDQLAEIEREIEDLKDILDKPERQRQIIRD 478 Query: 478 EIREVKEIFSKSTDLGRRRTTFC----EVSRADKATLQQAMIEKEPITVVISNRGW---- 529 E+ I K D RRT EVS D +I E + V ++ G+ Sbjct: 479 EL---MAIVDKHGD--DRRTRIVPHEGEVSMED-------LIADEDVVVTLTRTGYAKRT 526 Query: 530 ----IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNL 580 R+ K + K+ D + T D IL + G KAY LP N Sbjct: 527 RTDLYRAQKRGGKGVQGAQLKQDDIVSHFFVCSTHDWILFFTNKGRVYRAKAYELPEANR 586 Query: 581 LSGRGHGEAIQLLIDLNHNQDIVTAF-VYDSTCKLLVVSSKGNAFI 625 + G+ + L+ ++ I + D T +V + N + Sbjct: 587 TA---RGQHVANLLAFQPDEHIAQVMQIKDYTAAPYLVLATRNGLV 629 >gi|289550858|ref|YP_003471762.1| Topoisomerase IV subunit A [Staphylococcus lugdunensis HKU09-01] gi|289180390|gb|ADC87635.1| Topoisomerase IV subunit A [Staphylococcus lugdunensis HKU09-01] Length = 800 Score = 371 bits (952), Expect = e-100, Method: Compositional matrix adjust. Identities = 216/688 (31%), Positives = 393/688 (57%), Gaps = 22/688 (3%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 E ++ +SL + +R+ Y+ I+ERA+PD+RDG KPV RRI++AM G + F+K Sbjct: 3 EIIQDLSLEDVIGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTYDKNFRK 62 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 SA+ VG+VIG+ HPHGD SVYD++VRL+Q + R+ L+ GN G+ID D AA RYTEA Sbjct: 63 SAKTVGDVIGQYHPHGDSSVYDAMVRLSQDWKLRHVLVEMHGNNGSIDNDPPAAMRYTEA 122 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 +++Q+AE +L+ ++++ V F Y++ EP+V P++FPNLL NG++GI+ G AT IP H Sbjct: 123 KLSQLAEELLRDINKETVSFVSNYDDTTLEPMVLPARFPNLLVNGSTGISAGYATDIPPH 182 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 N+ E+ +A L IDNP IS+ +L++YI GPDFPTGGII + + I ++Y G+G VR+ Sbjct: 183 NLAEVIQATLKYIDNPNISVSQLMKYIQGPDFPTGGII-QGVDGIKKAYETGKGKIVVRS 241 Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314 + E + G +VVTE+PY+V KS L+++I EL K++ + ++RDE+ + Sbjct: 242 KVETEALRNGRQQLVVTEVPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRIAI 301 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 + + + + +F SD++ + NM +S GR P++M + I+ +L H+ EV+ Sbjct: 302 ELKKEANSEAIKNYLFKNSDLQISYNFNMVAISDGR-PKLMGIRQIIDSYLNHQIEVVVN 360 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAI 431 R+ F + ++R+ I++GL+ A +DE+IA+IR N+ K +V+ + T+ Q +AI Sbjct: 361 RTKFDLDHAEKRMHIVEGLMKALSILDEVIALIRESKNKRDAKDNLVATYGFTDAQAEAI 420 Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491 + L+L L + ++K+E L ++ +L++ I E++++++ F Sbjct: 421 VMLQLYRLTNTDIVELKNEHAELSERIKEYRHILDNHDALLTVIKNELKDIRKRFKTE-- 478 Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD---LSALHFKEG 548 R + E A+ ++ M+ E + + ++ +G+I+ + S + +S + K+G Sbjct: 479 ----RLSSIEAEIAEIKIDKEVMVPSEDVIMSVTAQGYIKRTSTRSFNASGVSEIGLKQG 534 Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDIVTAF 606 D L +T D IL+ + G+ +P L R G+ + L+ + ++ I+ + Sbjct: 535 DRLLKYQEVNTQDTILVFTNKGRYLFIPVHKLADTRWKELGQHVSQLVAIEEDEYIINVY 594 Query: 607 VYDSTCK--LLVVSSKGNAFIVEESEIIANTRKGKTF--LKVSSEEKMKLVVKVTGDHVA 662 + + +++++ + + TR K +KV ++++ V ++T D + Sbjct: 595 NEKNFQQEAFYIMATRNGMIKKSHAGLFKTTRYTKPLVAMKVKPQDEIISVQRLTEDQII 654 Query: 663 VVGENRKL-LIFSIDQIPEMS-RGKGVR 688 V ++ + L ++ +++ + R GV+ Sbjct: 655 TVLTHKGMSLTYNTNELSDTGLRAAGVK 682 >gi|257416143|ref|ZP_05593137.1| DNA topoisomerase IV subunit A [Enterococcus faecalis AR01/DG] gi|257157971|gb|EEU87931.1| DNA topoisomerase IV subunit A [Enterococcus faecalis ARO1/DG] Length = 820 Score = 371 bits (952), Expect = e-100, Method: Compositional matrix adjust. Identities = 212/618 (34%), Positives = 366/618 (59%), Gaps = 19/618 (3%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 + V+ ++L + +R+ Y+ I+ERA+PD+RDG KPV RRI+ +M++ G F F+K Sbjct: 5 QEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFSMNKDGNTFDKGFRK 64 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 SA+ VG ++G HPHGD S+Y+++VRL+Q + R LI GN G++DGD AA RYTEA Sbjct: 65 SAKSVGNIMGNYHPHGDSSIYEAMVRLSQDWKLREVLIEMHGNNGSMDGDPPAAMRYTEA 124 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 R++Q++ +L+ +D++ VDF +++ + EP V P+K+PNLL NG++GI+ G AT IP+H Sbjct: 125 RLSQLSGELLKDIDKNTVDFVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATEIPTH 184 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 N+ EI + + LIDNP S+EKL+EYI GPDFPTGGI+ + + I ++Y GRG +RA Sbjct: 185 NLAEIIDGTVYLIDNPNASLEKLMEYIPGPDFPTGGIL-QGKAEIKKAYETGRGKVILRA 243 Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314 + +E + G IV++EIPY+V K+ L++K+ E+ + K++ + ++RDES ++ Sbjct: 244 KTKIEPLKGGKQQIVISEIPYEVNKATLVKKMDEIRLNKKVDGIAEVRDESDRTGLQIVV 303 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 + ++ + ++ +F ++++ + NM + PQ + L IL+ ++ HR+ V+ Sbjct: 304 ELKKDVNAEGILNYLFKNTELQINYNFNMVAID-NMTPQQVGLKRILESYITHRKSVIIN 362 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDK--PKPVMVSRFSLTENQVDAI 431 R F + +R I+ GL+ A +D++IA IR ++DK K +VS ++ TE Q +AI Sbjct: 363 RCQFELDKARKREHIVAGLIKALSILDKVIATIRGSKDKKDAKKNLVSDYAFTEEQAEAI 422 Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491 + L+L L + ++ E L + ++ ++LN+ K+ ++ + E+REVK+ + Sbjct: 423 VTLQLYRLTNTDITDLQEEAKTLEQQIAELLNILNNEKELFSVMKKELREVKKQY----- 477 Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSVDL-SALHFKEG 548 G R T E + ++ +E + V +++ G+I+ S++S++ + KEG Sbjct: 478 -GNPRLTQIEEEIQEIKIETAVLVAQEDVVVTVTHEGYIKRSSVRSYTASKPEEIGMKEG 536 Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAI-QLLIDLNHNQDIVTA 605 D L A +T D +LL++ G P L L + GE I Q +++L ++ I+ Sbjct: 537 DFLLYAGEVNTLDHLLLVTNKGNMIYRPVHELPDLRWKEIGEHISQTILNLAIDESIIAV 596 Query: 606 FVYD--STCKLLVVSSKG 621 + Y S K V +K Sbjct: 597 YPYKELSPTKTFVFITKA 614 >gi|225025685|ref|ZP_03714877.1| hypothetical protein EIKCOROL_02587 [Eikenella corrodens ATCC 23834] gi|224941578|gb|EEG22787.1| hypothetical protein EIKCOROL_02587 [Eikenella corrodens ATCC 23834] Length = 915 Score = 371 bits (952), Expect = e-100, Method: Compositional matrix adjust. Identities = 223/637 (35%), Positives = 353/637 (55%), Gaps = 67/637 (10%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 VSL + + YL YA+S I RA+PD+RDG KPVHRR+++AM E+ ++ +++KKSARIV Sbjct: 16 VSLEEEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELKNNWNSSYKKSARIV 75 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGD +VYD++VR+AQPF RY L+ GQGNFG++DGD AAA RYTE RM ++ Sbjct: 76 GDVIGKYHPHGDSAVYDTIVRMAQPFSMRYMLVDGQGNFGSVDGDGAAAMRYTEIRMAKI 135 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A +L ++ED V+F Y+ + EP+V P++FP+LL NG++GIAVGMAT+IP HN+ + Sbjct: 136 AHEMLADIEEDTVNFGPNYDGSEQEPLVMPTRFPSLLTNGSAGIAVGMATNIPPHNLGDT 195 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 +A L L+ +P+ SI+ L++ I PDFPTG I + E YR GRG +R + +E Sbjct: 196 VDACLQLLADPDTSIDALIDTIKAPDFPTGATIY-GLAGVREGYRTGRGRVVMRGKTHIE 254 Query: 260 EVGRGS--WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317 +G+ I++ EIPYQV K++L+EKI EL+ K + + D+RDES + V+ Sbjct: 255 PIGKHGEREAIIIDEIPYQVNKAKLVEKIGELVREKTLEGISDLRDESDKSGMRVVIELK 314 Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377 R+ + ++++ ++ L+ ++ F +NM L G+ P+++ L IL E+L HRREV+ RR+ Sbjct: 315 RNENAEVVLNQLYKLTQLQDSFGINMVALVDGQ-PRLLNLKQILAEFLRHRREVVTRRTL 373 Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV----------------MVSR- 420 FR++ I +G +A NID +I +I+ M+SR Sbjct: 374 FRLKKARHEGHIAEGKAVALSNIDPMIQLIKESADAAKAKAKLLARPWQSGLVGDMLSRT 433 Query: 421 ----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458 + L++ Q DAIL + LR+L L++ I ++ ++A+ Sbjct: 434 DLDLNMARPEGLPENLGLREDGYYLSDLQADAILRMSLRNLTGLDQDTILADYKTIMAQI 493 Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518 +L ++ I E+ E+K T+ G R + D A + +I Sbjct: 494 IDFLDILAKPERITQIIHDELIEIK------TNFGDPRRSEINPFGGDIA--DEDLIPPR 545 Query: 519 PITVVISNRGWIRSLKSHSVDL--------SALHFKEGDSLKIALHAHTTDRILLLSTDG 570 + V +++ G+I++ + A K+ D ++ A+T D ++ + G Sbjct: 546 EMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDYLMCFTNHG 605 Query: 571 -----KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDI 602 K Y LP G S G I +I L+ N+ + Sbjct: 606 RCHWIKVYKLPEGGRNS---RGRPINNVIQLDENEKV 639 >gi|240115869|ref|ZP_04729931.1| DNA gyrase subunit A [Neisseria gonorrhoeae PID18] gi|268601544|ref|ZP_06135711.1| DNA gyrase subunit A [Neisseria gonorrhoeae PID18] gi|268585675|gb|EEZ50351.1| DNA gyrase subunit A [Neisseria gonorrhoeae PID18] Length = 916 Score = 371 bits (952), Expect = e-100, Method: Compositional matrix adjust. Identities = 226/628 (35%), Positives = 352/628 (56%), Gaps = 65/628 (10%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 VSL + + YL YA+S I RA+PD+RDG KPVHRR+++AM E+ ++ AA+KKSARIV Sbjct: 19 VSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIV 78 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGD +VYD++VR+AQ F RY LI GQGNFG++DG +AAA RYTE RM ++ Sbjct: 79 GDVIGKYHPHGDSAVYDTIVRMAQNFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMAKI 138 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 + +L ++E+ V+F Y+ + EP+V P++FP LL NG+SGIAVGMAT+IP HN+ + Sbjct: 139 SHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGSSGIAVGMATNIPPHNLTDT 198 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 A L L+D P+ I++L++ I PDFPTG I + E Y+ GRG +R + +E Sbjct: 199 INACLRLLDEPKTEIDELIDIIQAPDFPTGATIY-GLGGVREGYKTGRGRVVMRGKTHIE 257 Query: 260 EVGRGS--WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317 +G+ IV+ EIPYQV K++L+EKI +L+ K + + ++RDES + V+ Sbjct: 258 PIGKNGEREAIVIDEIPYQVNKAKLVEKIGDLVREKTLEGISELRDESDKSGMRVVIELK 317 Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377 R+ + ++++ ++ L+ ++ F +NM VL G+ P+++ L IL E+L HRREV+ RR+ Sbjct: 318 RNENAEVVLNQLYKLTPLQDSFGINMVVLVDGQ-PRLLNLKQILSEFLRHRREVVTRRTL 376 Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSR-------------- 420 FR++ I +G +A NIDEII +I+ N + K +++R Sbjct: 377 FRLKKARHEGHIAEGKAVALSNIDEIIKLIKESPNAVEAKEKLLARPWRSSLVEEMLTRS 436 Query: 421 ----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458 + L+E Q DAIL + LR+L L++ +I NL+ + Sbjct: 437 GLDLEMMRPEGLAANIGLKKQGYYLSEIQADAILRMSLRNLTGLDQKEIIESYKNLMGKI 496 Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518 +L+ ++ I E+ E+K T+ G R + D A + +I + Sbjct: 497 IDFVDILSKPERITQIIRDELEEIK------TNYGDERRSEINPFGGDIA--DEDLIPQR 548 Query: 519 PITVVISNRGWIRSLKSHSVDL--------SALHFKEGDSLKIALHAHTTDRILLLSTDG 570 + V +++ G+I++ + A K+ D ++ A+T D ++ + G Sbjct: 549 EMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDYLMCFTNLG 608 Query: 571 KA-----YTLPAGNLLS-GRGHGEAIQL 592 K Y LP G S GR IQL Sbjct: 609 KCHWIKVYKLPEGGRNSRGRPINNVIQL 636 >gi|158336251|ref|YP_001517425.1| DNA gyrase subunit A [Acaryochloris marina MBIC11017] gi|158306492|gb|ABW28109.1| DNA gyrase, A subunit [Acaryochloris marina MBIC11017] Length = 871 Score = 371 bits (952), Expect = e-100, Method: Compositional matrix adjust. Identities = 242/713 (33%), Positives = 390/713 (54%), Gaps = 37/713 (5%) Query: 9 SNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDF 68 S+ ++ + LR + YL YA+S I RA+PD RDG KPVHRRI++AM E+GL Sbjct: 4 SSDPAQDRIILTDLRDEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTP 63 Query: 69 GAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAA 128 F+K AR+VGEV+GK HPHGD +VYD+LVR+AQ F R PLI+G GNFG+ID D AA Sbjct: 64 DRPFRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRMPLINGHGNFGSIDNDPPAA 123 Query: 129 YRYTEARMTQVA-ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187 RYTE R+ ++ + +L ++++ VDF D ++ EP+V P++ P LL NG+SGIAVGM Sbjct: 124 MRYTECRLQALSTDSLLPDIEQETVDFGDNFDGSQQEPLVLPARIPQLLINGSSGIAVGM 183 Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247 AT+IP HN+ E+ + +ALI NPEI+ +L++ I GPDFPTGG I+ + I E+Y GR Sbjct: 184 ATNIPPHNLGEVIDGLVALIHNPEITDLELMKIIPGPDFPTGGRILGT-AGIREAYTTGR 242 Query: 248 GGFRVRARW---CVEEVGRGSW-CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303 G +R +E+ GR I++TE+P+Q K+ LIE+IAE + KR+ + DIRD Sbjct: 243 GSITMRGVAEIETLEQSGRPDREAIIITELPFQTNKAALIERIAENVNDKRLEGISDIRD 302 Query: 304 ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363 ES D ++ R P +++ +++ + ++T F NM L +G PQ++ L L Sbjct: 303 ESDRDGMRIVIELKRDAYPQVVLNNLYKQTPIQTNFGANMLAL-VGGDPQLLTLRQFLSV 361 Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSR 420 +L R + + RR+ F+++ R +L+GLLIA N+D +I +IR + + ++ Sbjct: 362 FLEFREDAILRRTRFQLRKAQERDHLLQGLLIALDNLDAVIQLIRQAADSAVARQELMDG 421 Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480 F L++ Q DAIL ++LR L LE +I+ E +L ++ +L ++ I E+ Sbjct: 422 FGLSDTQADAILQMQLRRLTALEAEKIEREHQDLQERIADLEDILARRERVLEIIETEVT 481 Query: 481 EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDL 540 E+K F+ R T E + AD + +I + ++++ +G+++ + + + Sbjct: 482 ELKTKFASP------RRTLIEANLADLDDID--LIANDQAVILVTEQGYVKRMPVDTFNA 533 Query: 541 --------SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL-LSGR-GHGEAI 590 + KE D+++ D +L S G Y L A + +S R G + Sbjct: 534 QSRATRGRAGAKIKEDDAVEHFFGCCDHDSVLFFSDRGVVYCLRAYQIPVSSRTARGVPL 593 Query: 591 QLLIDLNHNQDIVTAFVYD--STCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEE 648 L+ + + I + S + LV+ + G FI + + + + + +S EE Sbjct: 594 VQLLPIPREEKITSVIPVSEFSEDEYLVMMTAG-GFIKKTALAAFSNIRANGLIAISLEE 652 Query: 649 K--MKLVVKVTGDHVAVVGENRKLLI-FSID--QIPEMSRG-KGVRLQSYKDG 695 ++ V + V+G R + I F D Q+ + R +GVR ++G Sbjct: 653 GDLLRWVRLTRAEDSIVIGSRRGMSIHFRADHQQLRPLGRATRGVRAMRLREG 705 >gi|325204378|gb|ADY99831.1| DNA gyrase, A subunit [Neisseria meningitidis M01-240355] Length = 916 Score = 371 bits (952), Expect = e-100, Method: Compositional matrix adjust. Identities = 228/628 (36%), Positives = 353/628 (56%), Gaps = 65/628 (10%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 VSL + + YL YA+S I RA+PD+RDG KPVHRR+++AM E+ ++ AA+KKSARIV Sbjct: 19 VSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIV 78 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGD +VYD++VR+AQ F RY LI GQGNFG++DG +AAA RYTE RM ++ Sbjct: 79 GDVIGKYHPHGDTAVYDTIVRMAQNFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMAKI 138 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 + +L ++E+ V+F Y+ + EP+V P++FP LL NG+SGIAVGMAT+IP HN+ + Sbjct: 139 SHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGSSGIAVGMATNIPPHNLSDT 198 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 A L L+D P+ I++L++ I PDFPTG I + E Y+ GRG +R + +E Sbjct: 199 VNACLRLLDAPDTEIDELIDIIQAPDFPTGATIY-GLSGVREGYKTGRGRVIMRGKTHIE 257 Query: 260 EVGRGS--WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317 +G+ IV+ EIPYQV K++L+EKI +L+ K + + ++RDES + V+ Sbjct: 258 PIGKNGEREAIVIDEIPYQVNKAKLVEKIGDLVREKTLEGISELRDESDKSGMRVVIELK 317 Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377 R+ + ++++ ++ L+ ++ F +NM VL G+ P+++ L IL E+L HRREV+ RR+ Sbjct: 318 RNENAEVVLNQLYKLTPLQDSFGINMVVLVDGQ-PRLLNLKQILSEFLRHRREVVTRRTL 376 Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN-----EDKPKPV-----------MVSR- 420 FR++ I +G +A NIDEII +I+ E K K + M++R Sbjct: 377 FRLKKARHEGHIAEGKAVALSNIDEIIKLIKESPNAAEAKDKLLAYPWRSSLVEEMLTRS 436 Query: 421 ----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458 + L+E Q DAIL + LR+L L++ +I NL+ + Sbjct: 437 GLDLEMMRPEGLAANIGLKEQGYYLSEIQADAILRMSLRNLTGLDQEEIVESYKNLMGKI 496 Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518 +L+ ++ I E+ E+K T+ G R + D A + +I + Sbjct: 497 IDFVDILSKPERITQIIRDELEEIK------TNYGDERRSEINPFGGDIA--DEDLIPQR 548 Query: 519 PITVVISNRGWIRSLKSHSVDL--------SALHFKEGDSLKIALHAHTTDRILLLSTDG 570 + V +++ G+I++ + A K+ D ++ A+T D ++ + G Sbjct: 549 EMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDYLMCFTNLG 608 Query: 571 KA-----YTLPAGNLLS-GRGHGEAIQL 592 K Y LP G S GR IQL Sbjct: 609 KCHWIKVYKLPEGGRNSRGRPINNVIQL 636 >gi|161506640|ref|YP_001576588.1| DNA gyrase [Lactobacillus helveticus DPC 4571] gi|160347629|gb|ABX26303.1| DNA gyrase [Lactobacillus helveticus DPC 4571] Length = 827 Score = 371 bits (952), Expect = e-100, Method: Compositional matrix adjust. Identities = 216/621 (34%), Positives = 354/621 (57%), Gaps = 38/621 (6%) Query: 8 NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67 + N + ++ V L + +L YA+S I RA+PD+RDG KPV RRI++ MSE+G+ Sbjct: 2 DDNQTQDRRIRNVDLTSMMRSSFLDYAMSVIVARALPDVRDGLKPVQRRILYGMSELGVT 61 Query: 68 FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAA 127 +KKSARIVGEV+GK HPHGD S+Y ++ +AQ F RY L+ G GNFG++DGD A Sbjct: 62 PDKPYKKSARIVGEVMGKFHPHGDSSIYLAMAHMAQDFSYRYMLVDGHGNFGSVDGDEPA 121 Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187 A RYTEARM+++A +L+ ++++ +D++ Y++ ++EPVV P++ PNLL NG +GIAVGM Sbjct: 122 AMRYTEARMSKIAAEMLRDINKNTIDWQRNYDDTENEPVVLPARIPNLLINGANGIAVGM 181 Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247 T+IP HN+ E+ L+ NP+ + + L++ I GPDFPT G I+ R I +Y G+ Sbjct: 182 TTNIPPHNLSEVISGLHMLMKNPDATTKDLMKVIPGPDFPT-GGIIMGRGGIYRAYESGK 240 Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307 G VRA +E G I+V+EIPY V K+ L++KIA+L K I + +RDES + Sbjct: 241 GNIVVRAETNIETEKSGRERIIVSEIPYMVNKAELVKKIADLAREKIIDGITGVRDESDQ 300 Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367 + R +++ ++F + M+ F +NM + G P + L +L+ +L H Sbjct: 301 TGMRITIDIRRDASASVVLNNLFKQTQMQANFGMNMVAIVDG-APHYLTLKQMLQYYLDH 359 Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLT 424 +++V+ RR+ F + + R IL+GL IA NIDEI+ IIR + D K ++SRF L Sbjct: 360 QKDVVTRRTKFELAKAEARAHILEGLRIALDNIDEIVHIIRSSHSSDIAKATLISRFGLD 419 Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484 + Q AIL++RL L LE ++++E L A+ +L ++ I E+ ++++ Sbjct: 420 DKQSQAILDMRLVRLTGLERDKVEAEYKELQAKIADYKDILAKPERIDKIIYDELLDIQK 479 Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSLKSHSVD---- 539 F +RRT E+ ++ +++ + +IEK+ I + +++ +I+ + Sbjct: 480 RFGD-----KRRT---EIGASEVVSIEDEDLIEKQNILLTVTHNSYIKRMPIQEFKTQNR 531 Query: 540 ----LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNL 580 + + ++GD ++ +++ T D +L + GK Y+ LP NL Sbjct: 532 GGKGIKGMGVQDGDFIEHLIYSSTHDMLLFFTNAGKVYSKKAYEIPEYGRMAKGLPVVNL 591 Query: 581 LSGRGHGEAIQLLIDLNHNQD 601 L GE +Q +I++ D Sbjct: 592 LQLE-KGEKVQTVINVPEGAD 611 >gi|478849|pir||S30571 DNA topoisomerase (ATP-hydrolyzing) (EC 5.99.1.3) chain A - Haloferax sp gi|43485|emb|CAA42740.1| DNA gyrase A subunit [Haloferax sp. Aa2.2] Length = 858 Score = 371 bits (952), Expect = e-100, Method: Compositional matrix adjust. Identities = 257/744 (34%), Positives = 413/744 (55%), Gaps = 73/744 (9%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 VK + +E+ Y+ YA+S I RA+PD+RDG KPVHRRI++AM + G+ ++ +KS+ Sbjct: 19 VKNARIEDEMEQSYIDYAMSVIAGRALPDVRDGLKPVHRRILYAMHQAGVTSNSSHRKSS 78 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 IVGE +G HPHGD ++YD+L R+A+ F RYPL+ GQGNFG++DGD AA RYTEARM Sbjct: 79 SIVGETMGDYHPHGDSAIYDTLARMAEDFSMRYPLVDGQGNFGSVDGDPPAAMRYTEARM 138 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 + +AE +L +D+D VDF+ Y++ EP V PS FPNLL NG+SGIAVGM+T+IP HN+ Sbjct: 139 SPIAEELLDDIDKDTVDFQSNYDDRKQEPTVLPSSFPNLLVNGSSGIAVGMSTNIPPHNL 198 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ +AA+ LI+NP+ ++ L+E+I GPDFPTG IV +R ++ ++Y+ GRG RVRA + Sbjct: 199 GEVVDAAVELIENPDATVADLMEHIKGPDFPTGANIV-ARNAVHKAYKTGRGRVRVRADY 257 Query: 257 CV-EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314 V EE GR IV+ E+PYQ K+RLIE+IA+ + +I + DIRDES D +R+V+ Sbjct: 258 DVFEEEGR----IVINELPYQENKARLIERIADDVNEGKIEGIRDIRDESERDGIRVVIE 313 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K ++ ++++ + + +E+ F + +N+ + PQV+ L L+ +L HRR+V+ R Sbjct: 314 LKRGAMAE--VVKNQLLDNHLESTFGV-INLALVDGQPQVLTLKETLEHYLDHRRDVVRR 370 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVM------------VS 419 RS + + + R IL G L A NID+++ IRN D K + + Sbjct: 371 RSEYELAEAEDRAHILDGRLKALDNIDDVVETIRNSESRDDAKAALRGEVEVEVDGEPLP 430 Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479 F +E Q + I++++L SL +E +I++E +++ A E+++++L + I E+ Sbjct: 431 TFDFSEEQANHIVSMQLGSLTSMEAAEIEAEYEDVQATIERLETILGDQSELDAVIESEL 490 Query: 480 REVKEIFSKSTDLGRRRTTFC----EVSRAD--------KATLQQAMIEKEPITVVISNR 527 ++K+ ++ RRT+F EV+RAD + I++ P++ Sbjct: 491 LDIKDEYADD-----RRTSFVANTGEVTRADLIPEEDVVVVVSEDDYIKRMPVS------ 539 Query: 528 GWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRG 585 R+ + KEGD++ +T D +L + G+ Y L A + +S Sbjct: 540 -RFRAQHRGGKGIIGTDLKEGDNVSSVFVTNTHDDLLCFTNHGQVYQLKAYQVPEMSRTA 598 Query: 586 HGEAIQLLIDLNHNQDIVTAFVY-----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKT 640 G++ L+D + ++I TA V D L +V+ G G Sbjct: 599 RGKSAVNLLDFDDGEEI-TAVVNCDDLEDIEGYLTMVTRNGYIKRTGTDRFQNILSTGII 657 Query: 641 FLKVSSEEKMKLVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSRG----KGVRLQSYKDG 695 K+ +++ V G+ V+G R + I F D++ M R +G++L+ Sbjct: 658 ATKLDEGDELVDVEVTDGETDLVIGTERGMSIRFDEDEVRAMGRSARGVRGIKLEG---- 713 Query: 696 GISDVICFKICEGLTWIDSAGRSY 719 DV+ G+ ID A S+ Sbjct: 714 --DDVVA-----GVAAIDEAHHSW 730 >gi|194246594|ref|YP_002004233.1| DNA gyrase, alpha subunit [Candidatus Phytoplasma mali] gi|193806951|emb|CAP18383.1| DNA gyrase, alpha subunit [Candidatus Phytoplasma mali] Length = 838 Score = 371 bits (952), Expect = e-100, Method: Compositional matrix adjust. Identities = 256/788 (32%), Positives = 442/788 (56%), Gaps = 70/788 (8%) Query: 4 DNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSE 63 D + N ++LV + +K +++ +++ +L+YA+S I RA+PD++DG KPV RRI++ M+E Sbjct: 6 DLLKNEDSLVGK-IKKININQEIKKSFLSYAMSVIVARALPDIKDGLKPVQRRILYGMNE 64 Query: 64 MGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG 123 +G+ +++KKSARIVG+V+GK HPHGD S+Y++++R+AQ F RYPL+ G GN G+IDG Sbjct: 65 LGVYSHSSYKKSARIVGDVMGKFHPHGDSSIYEAMIRMAQDFNYRYPLVDGHGNLGSIDG 124 Query: 124 DSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183 D+AAA RYTE +M++++ +L+ +D++ VDF + Y+ + EPV PS FPNLL NG++GI Sbjct: 125 DNAAAMRYTEVKMSKISMELLKEIDQETVDFVENYDGSEREPVFLPSSFPNLLVNGSTGI 184 Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243 AVGMAT+IPSHN+ E+ +A + IDN EI E L+++I GPDFPTGG I+ + E+Y Sbjct: 185 AVGMATNIPSHNLSEVIDALINYIDNKEIDTEGLMKFIKGPDFPTGGEIL-GISGLKEAY 243 Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303 GRG VR++ + + I++ EIPYQ++K+ LIEKIA L+ K I + D+RD Sbjct: 244 ETGRGRIFVRSKTEIIYSDKNKPIIIIKEIPYQIKKTSLIEKIAFLVKEKIIEGITDLRD 303 Query: 304 ES--AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361 ES + +RI++ + + ++P +++ +++ + ++T F NM L G VP+++ L +L Sbjct: 304 ESNNSRGMRIIIELR-KDVEPKIILNNLYKHTQLQTSFCFNMIALVNG-VPKIVSLKNML 361 Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN----EDKPKPVM 417 +E+ R +V+ R+ F + ++ ++ L I +I++++ II+N ++ K +M Sbjct: 362 EEFFLFRIDVINRQKKFELNKAKQKKHLITALAIILNDIEKVLKIIKNSNDVKEAQKNIM 421 Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477 ++ ++ E Q AIL + L+ + LE ++ E + L + + ++++NS ++ + Sbjct: 422 IN-YNFDEIQSKAILEMSLQKITNLEIKKVIKEEEILKLKIYECENIINSQTKKEKILKK 480 Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSLKSH 536 E+ ++K F +R++ +S T++ +++I KE I + ++N+G+I+ L Sbjct: 481 ELLKIKNQFQ-----DKRKSI---ISNEQYLTVENESLINKETILITVTNKGYIKRLNLD 532 Query: 537 SVD--------LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGE 588 + +S L +E D L+ L T D L + GK Y L + G + + Sbjct: 533 TYKKQNRGGKGVSGLKMQENDFLEHILITSTHDHQLFFTNKGKIYQLKGYEIPLGSRYSK 592 Query: 589 AIQL--LIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSS 646 I L L+ L N+ L + F E++ ++ T+KG +K +S Sbjct: 593 GIPLVNLLPLEKNE-------------FLTSLTSVKDFKEEKNYLVLVTKKG--LIKRNS 637 Query: 647 EEKMKLVVKVTGDHVAVVGENRKLLIFS-----IDQIPEMSRGKGVRLQSY-------KD 694 + + V+ G AV+ N ++L S D I S GK +R + K Sbjct: 638 LKDFE-NVRRNGKIAAVLKNNDEVLFVSRTTGQQDIILAASDGKAIRFNEFEIRQTGRKS 696 Query: 695 GGISDVICFKICE---GLTWIDSAGRSYNRSENDLLGWLGK--------RGGVGSLVPKG 743 G+ I K E G+T +DS ++ G + K RGG G+ K Sbjct: 697 SGVRG-IKIKTEEEIIGMTVVDSEKQNILVITEKGYGKITKANEYRNQIRGGKGTKTLKI 755 Query: 744 FPRSGKFL 751 R+GK + Sbjct: 756 TSRNGKLV 763 >gi|307708547|ref|ZP_07645012.1| DNA topoisomerase IV, A subunit [Streptococcus mitis NCTC 12261] gi|4959488|gb|AAD34369.1|AF129764_3 ParC [Streptococcus mitis] gi|307615463|gb|EFN94671.1| DNA topoisomerase IV, A subunit [Streptococcus mitis NCTC 12261] Length = 823 Score = 371 bits (952), Expect = e-100, Method: Compositional matrix adjust. Identities = 225/709 (31%), Positives = 398/709 (56%), Gaps = 33/709 (4%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 N++ +SL + ER+ Y+ I++RA+PD+RDG KPV RRI+++M++ G F +++KS Sbjct: 3 NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDGNTFDKSYRKS 62 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 A+ VG ++G HPHGD S+YD++VR++Q + R L+ GN G++DGD AA RYTEAR Sbjct: 63 AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 ++++A +LQ +D+ V F +++ + EP V P+ FPNLL NG++GI+ G AT IP HN Sbjct: 123 LSEIAGYLLQDIDKKTVPFSWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 182 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 + E+ +AA+ +ID+P ++KL+E++ GPDFPTGGII + R+ I ++Y G+G VR++ Sbjct: 183 LAEVIDAAVYMIDHPTAKVDKLMEFLPGPDFPTGGII-QGRDEIKKAYETGKGRVVVRSK 241 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315 +E++ G IV+TEIPY++ K+ L++KI ++ + ++ + ++RDES D + Sbjct: 242 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNSKVAGIAEVRDESDRDGLRIAIE 301 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 + + +L++ +F +D++ + NM + P+ + + IL ++AHRREV+ R Sbjct: 302 LKKDANTELVLNYLFKYTDLQINYNFNMVAID-NFTPRQVGIVPILSSYIAHRREVILAR 360 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432 S F + ++R+ I++GL+ +DE+IA+IR N+ K + + TE Q +AI+ Sbjct: 361 SRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIV 420 Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492 L+L L + ++ E L + + +++ + +N + E+REVK+ F+ Sbjct: 421 TLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP--- 477 Query: 493 GRRRTTFCEVSRA---DKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FK 546 R ++ + ++A D A+L I +E V ++ G+I+ S S L + Sbjct: 478 --RLSSLEDTAKAIEIDTASL----IAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKR 531 Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIV 603 + D L A TT +L+ +T G P L R GE + Q + + N++I+ Sbjct: 532 DDDRLIFVQSAKTTQHLLMFTTLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEIL 591 Query: 604 TAFV---YDSTCKLLVVSSKGNAFIVEESEIIA-NTRKGKT--FLKVSSE-EKMKLVVKV 656 V +D + G VE E T K K+ + K+ + +++ V + Sbjct: 592 YVEVVDQFDDATTYFAATRLGQIKRVERKEFTPWRTYKSKSVKYAKLKDDTDQIVAVAPI 651 Query: 657 TGDHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDGGI--SDVIC 702 D V ++ +N L F+I+++P + ++ GV+ + K+ S IC Sbjct: 652 KLDDVLLISQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDTLQSAFIC 700 >gi|218768400|ref|YP_002342912.1| DNA gyrase subunit A [Neisseria meningitidis Z2491] gi|121052408|emb|CAM08741.1| DNA gyrase subunit A [Neisseria meningitidis Z2491] gi|319410648|emb|CBY91018.1| DNA gyrase subunit A [Neisseria meningitidis WUE 2594] Length = 916 Score = 371 bits (952), Expect = e-100, Method: Compositional matrix adjust. Identities = 228/628 (36%), Positives = 353/628 (56%), Gaps = 65/628 (10%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 VSL + + YL YA+S I RA+PD+RDG KPVHRR+++AM E+ ++ AA+KKSARIV Sbjct: 19 VSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIV 78 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGD +VYD++VR+AQ F RY LI GQGNFG++DG +AAA RYTE RM ++ Sbjct: 79 GDVIGKYHPHGDTAVYDTIVRMAQNFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMAKI 138 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 + +L ++E+ V+F Y+ + EP+V P++FP LL NG+SGIAVGMAT+IP HN+ + Sbjct: 139 SHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGSSGIAVGMATNIPPHNLSDT 198 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 A L L+D P+ I++L++ I PDFPTG I + E Y+ GRG +R + +E Sbjct: 199 VNACLRLLDAPDTEIDELIDIIQAPDFPTGATIY-GLSGVREGYKTGRGRVIMRGKTHIE 257 Query: 260 EVGRGS--WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317 +G+ IV+ EIPYQV K++L+EKI +L+ K + + ++RDES + V+ Sbjct: 258 PIGKNGEREAIVIDEIPYQVNKAKLVEKIGDLVREKTLEGISELRDESDKSGMRVVIELK 317 Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377 R+ + ++++ ++ L+ ++ F +NM VL G+ P+++ L IL E+L HRREV+ RR+ Sbjct: 318 RNENAEVVLNQLYKLTPLQDSFGINMVVLVDGQ-PRLLNLKQILSEFLRHRREVVTRRTL 376 Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN-----EDKPKPV-----------MVSR- 420 FR++ I +G +A NIDEII +I+ E K K + M++R Sbjct: 377 FRLKKARHEGHIAEGKAVALSNIDEIIKLIKESPNAAEAKDKLLAHPWRSSLVEEMLTRS 436 Query: 421 ----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458 + L+E Q DAIL + LR+L L++ +I NL+ + Sbjct: 437 GLDLEMMRPEGLAANIGLKEQGYYLSEIQADAILRMSLRNLTGLDQEEIVESYKNLMGKI 496 Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518 +L+ ++ I E+ E+K T+ G R + D A + +I + Sbjct: 497 IDFVDILSKPERITQIIRDELEEIK------TNYGDERRSEINPFGGDIA--DEDLIPQR 548 Query: 519 PITVVISNRGWIRSLKSHSVDL--------SALHFKEGDSLKIALHAHTTDRILLLSTDG 570 + V +++ G+I++ + A K+ D ++ A+T D ++ + G Sbjct: 549 EMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDYLMCFTNLG 608 Query: 571 KA-----YTLPAGNLLS-GRGHGEAIQL 592 K Y LP G S GR IQL Sbjct: 609 KCHWIKVYKLPEGGRNSRGRPINNVIQL 636 >gi|255326476|ref|ZP_05367558.1| DNA gyrase, A subunit [Rothia mucilaginosa ATCC 25296] gi|255296516|gb|EET75851.1| DNA gyrase, A subunit [Rothia mucilaginosa ATCC 25296] Length = 876 Score = 371 bits (952), Expect = e-100, Method: Compositional matrix adjust. Identities = 203/529 (38%), Positives = 322/529 (60%), Gaps = 20/529 (3%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 +++ V L+ ++ YL YA++ I RA+PD+RDG KPVHRR+I+AM + G +F K Sbjct: 28 HIEQVDLQTEMQRSYLDYAMAVIIGRALPDVRDGLKPVHRRVIYAMYDGGYRPDRSFNKC 87 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 AR+VG+V+G+ HPHGD ++YD+LVRL Q ++ RYPL GQGNFG+ D AAA RYTE + Sbjct: 88 ARVVGDVMGQFHPHGDSAIYDTLVRLIQSWIMRYPLALGQGNFGSPGNDGAAAPRYTETK 147 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 M +A +++ ++ED VDF+ Y+ + EP V P++ PNLL NG+SGIAVGMAT+IP HN Sbjct: 148 MAPIALEMVRDINEDTVDFQPNYDGKSLEPTVLPARIPNLLVNGSSGIAVGMATNIPPHN 207 Query: 196 VQEICEAALALIDNPEISIEKLLEYII----GPDFPTGGIIVESRESIVESYRLGRGGFR 251 ++E+ E + NP + E+LL ++ GPDFPTG I+ ++ I ++YR GRG Sbjct: 208 LREVAEGVEWFLKNPHATNEELLNALMARIKGPDFPTGAQILGTK-GIEDAYRTGRGSIT 266 Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV-- 309 +RA VEE+ G C+VVTE+PYQ L KIAELI ++ + D+RDE++ Sbjct: 267 MRAVVNVEEI-HGRTCLVVTELPYQANPDNLAIKIAELIKDGKVTGIADLRDETSGRTGQ 325 Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369 R+V+ K R P +++ +++ + ++ F NM + G VP+ + LD ++ W+ H+ Sbjct: 326 RLVIVLK-RDASPKVVLNNLYKHTQLQENFSANMLAIVDG-VPRTLSLDAFVRHWVDHQM 383 Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTEN 426 +V+ RR+ +R++ + IL+GLL A +DE+IA+IR D+ + ++ + E Sbjct: 384 DVIVRRTRYRLRQAEEEAHILRGLLKALDALDEVIALIRRSPTADEARSGLMEFLQIDEA 443 Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486 Q AILN++LR L LE +I+ D L+ + ++++ S +Q I+ E+ EI Sbjct: 444 QAQAILNMQLRRLAALERQKIQDRHDELMRMIAEYNAIIASETRQREIIS---EELGEIV 500 Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKS 535 ++ D RRT D + + +I +E + V I+ G+I+ +S Sbjct: 501 NRYGD--ERRTQIMYGYNGDMS--MEDLIPEEEVVVTITRGGYIKRTRS 545 >gi|192382546|gb|ACF04294.1| GyrA [Neisseria meningitidis] gi|192382548|gb|ACF04295.1| GyrA [Neisseria meningitidis] Length = 916 Score = 371 bits (952), Expect = e-100, Method: Compositional matrix adjust. Identities = 228/628 (36%), Positives = 353/628 (56%), Gaps = 65/628 (10%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 VSL + + YL YA+S I RA+PD+RDG KPVHRR+++AM E+ ++ AA+KKSARIV Sbjct: 19 VSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIV 78 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGD +VYD++VR+AQ F RY LI GQGNFG++DG +AAA RYTE RM ++ Sbjct: 79 GDVIGKYHPHGDTAVYDTIVRMAQNFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMAKI 138 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 + +L ++E+ V+F Y+ + EP+V P++FP LL NG+SGIAVGMAT+IP HN+ + Sbjct: 139 SHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGSSGIAVGMATNIPPHNLSDT 198 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 A L L+D P+ I++L++ I PDFPTG I + E Y+ GRG +R + +E Sbjct: 199 VNACLRLLDAPDTEIDELIDIIQAPDFPTGATIY-GLSGVREGYKTGRGRVIMRGKTHIE 257 Query: 260 EVGRGS--WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317 +G+ IV+ EIPYQV K++L+EKI +L+ K + + ++RDES + V+ Sbjct: 258 PIGKNGEREAIVIDEIPYQVNKAKLVEKIGDLVREKTLEGISELRDESDKSGMRVVIELK 317 Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377 R+ + ++++ ++ L+ ++ F +NM VL G+ P+++ L IL E+L HRREV+ RR+ Sbjct: 318 RNENAEVVLNQLYKLTPLQDSFGINMVVLVDGQ-PRLLNLKQILSEFLRHRREVVTRRTL 376 Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN-----EDKPKPV-----------MVSR- 420 FR++ I +G +A NIDEII +I+ E K K + M++R Sbjct: 377 FRLKKARHEGHIAEGKAVALSNIDEIIKLIKESPNAAEAKDKLLAHPWRSSLVEEMLTRS 436 Query: 421 ----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458 + L+E Q DAIL + LR+L L++ +I NL+ + Sbjct: 437 GLDLEMMRPEGLAANIGLKEQGYYLSEIQADAILRMSLRNLTGLDQEEIVESYKNLMGKI 496 Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518 +L+ ++ I E+ E+K T+ G R + D A + +I + Sbjct: 497 IDFVDILSKPERITQIIRDELEEIK------TNYGDERRSEINPFGGDIA--DEDLIPQR 548 Query: 519 PITVVISNRGWIRSLKSHSVDL--------SALHFKEGDSLKIALHAHTTDRILLLSTDG 570 + V +++ G+I++ + A K+ D ++ A+T D ++ + G Sbjct: 549 EMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDYLMCFTNLG 608 Query: 571 KA-----YTLPAGNLLS-GRGHGEAIQL 592 K Y LP G S GR IQL Sbjct: 609 KCHWIKVYKLPEGGRNSRGRPINNVIQL 636 >gi|315122780|ref|YP_004063269.1| DNA gyrase subunit A [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313496182|gb|ADR52781.1| DNA gyrase subunit A [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 909 Score = 371 bits (952), Expect = e-100, Method: Compositional matrix adjust. Identities = 246/714 (34%), Positives = 378/714 (52%), Gaps = 62/714 (8%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 E+ + +VS+ ++ YL YA++ I RAIPDLRDG K VHRRI+ M +MG+++ + Sbjct: 13 EKGITSVSIVEEMQNSYLTYAINVILGRAIPDLRDGLKSVHRRILFGMMQMGVEWNKKYV 72 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 K ARI GEV+GK HPHG+ ++YD+L R+AQ + R LI GQGNFG+IDGD AA RYTE Sbjct: 73 KCARISGEVMGKYHPHGNAAIYDALARMAQDWSLRLLLIEGQGNFGSIDGDPPAAERYTE 132 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 R+ + A +L + +D VDFR Y+ EPVV +KFPNLL NG GIAVGMAT+IP+ Sbjct: 133 CRLQKAAHFLLDDLGKDTVDFRPNYDGSFQEPVVLCAKFPNLLVNGAGGIAVGMATNIPT 192 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E+ E +ALIDNP+I ++ +++ I+GPDFPTG II+ R I +Y GRG +R Sbjct: 193 HNLGEVIEGCIALIDNPDIDLDDMMKIILGPDFPTGAIIL-GRSGIRSAYATGRGSIVIR 251 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313 +E+ I+VTEIPYQV KS ++EKIAEL+ KRI + D+RDES V+ Sbjct: 252 GVTHIEKTEGDREKIIVTEIPYQVNKSAMLEKIAELVREKRIVDISDLRDESDRQGYRVV 311 Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373 R D+++ ++ + +++ F +NM L+ G P+ L ILK ++A R EV+ Sbjct: 312 IELKRGASADVILNQLYRYTSLQSLFSVNMVALN-GYKPERFTLIEILKNFIAFREEVVG 370 Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSR---------- 420 RR+ + + R +L GL IA N+DE++ IIR P+ ++ R Sbjct: 371 RRTKYLLNKARDRAHVLVGLAIAVSNLDEVVRIIRFSPNPESARRELMQRNWNAVDIKDL 430 Query: 421 ----------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSL 464 L+E Q AIL LRL L L I+ EL++L E + + Sbjct: 431 IDLIDDSSYTINSDGKMYLSEVQTRAILELRLARLTGLGRDDIRDELNSLGTEIKDCLEI 490 Query: 465 LNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVI 524 L+S + N I E++ +K+ D RR E+ + I +E + V + Sbjct: 491 LSSRSRLLNIIKQELKFIKD----ELDTPRR----TEIVDGLLDMEDEDCIVREDMVVTV 542 Query: 525 SNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----K 571 S+ G++ R+ + S + + D + +T +L S+ G K Sbjct: 543 SHFGYVKRVPLSLYRAQRRGGKGRSGVVTRNEDFVTDLFIVNTHTPVLFFSSLGFVYKEK 602 Query: 572 AYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVY---DSTCKLLVV---SSKGNAFI 625 + LP G S + G+A+ ++ L + I T +S+C L V + GN Sbjct: 603 VWRLPIG---SPQSRGKALINILSLQQGERITTIMPLPEDESSCSDLYVVFATKLGNVRR 659 Query: 626 VEESEIIANTRKGKTFLKVS-SEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQI 678 + S+ + R GK +K+ +E + + + G+ V + + + + F+I + Sbjct: 660 NKLSDFVQVNRSGKIAMKLDEGDEILSVETCMEGNDVLLTTKLGQCIRFAITDV 713 >gi|289167750|ref|YP_003446019.1| topoisomerase IV subunit A [Streptococcus mitis B6] gi|288907317|emb|CBJ22154.1| topoisomerase IV subunit A [Streptococcus mitis B6] Length = 823 Score = 371 bits (952), Expect = e-100, Method: Compositional matrix adjust. Identities = 226/706 (32%), Positives = 398/706 (56%), Gaps = 27/706 (3%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 N++ +SL + ER+ Y+ I++RA+PD+RDG KPV RRI+++M++ G F +++KS Sbjct: 3 NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDGNTFDKSYRKS 62 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 A+ VG ++G HPHGD S+YD++VR++Q + R L+ GN G++DGD AA RYTEAR Sbjct: 63 AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 ++++A +LQ +++ V F +++ + EP V P+ FPNLL NG++GI+ G AT IP HN Sbjct: 123 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 182 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 + E+ +AA+ +ID+P ++KL+E++ GPDFPTGGII + R+ I ++Y G+G VR++ Sbjct: 183 LAEVIDAAVYMIDHPTAKVDKLMEFLPGPDFPTGGII-QGRDEIKKAYETGKGRVVVRSK 241 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315 VE++ G IV+TEIPY++ K+ L++KI ++ + ++ + ++RDES D + Sbjct: 242 TEVEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 301 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 + + +L++ +F +D++ + NM + P+ + + IL ++AHRREV+ R Sbjct: 302 LKKDANTELVLNYLFKYTDLQINYNFNMVAID-NFTPRQVGIVPILSSYIAHRREVILAR 360 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432 S F + ++R+ I++GL+ +DE+IA+IR N+ K + + TE Q +AI+ Sbjct: 361 SRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIV 420 Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492 L+L L + ++ E L + + +++ + +N + E+REVK+ F+ + L Sbjct: 421 TLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFA-TPRL 479 Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FKEGD 549 T +V D A+L I +E V ++ G+I+ + S S L ++ D Sbjct: 480 SSLEDT-AKVIEIDTASL----IAEEDTYVSVTKAGYIKRTSTRSFAASTLEEIGKRDDD 534 Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIVTAF 606 L A TT +L+ +T G P L R GE + Q + + N++I+ Sbjct: 535 RLIFVQAAKTTQHLLMFTTLGNVIYRPIHELADTRWKDIGEHLSQTITNFETNEEILYVE 594 Query: 607 V---YDSTCKLLVVSSKGNAFIVEESEIIA-NTRKGKT--FLKVSSE-EKMKLVVKVTGD 659 V +D + G VE E T K K+ + K+ + +++ V + D Sbjct: 595 VVDQFDDATTYFAATRLGQIKRVERKEFSPWRTYKSKSVKYAKLKDDTDQIVAVAPIKLD 654 Query: 660 HVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDGGI--SDVIC 702 V ++ +N L F+I+++P + ++ GV+ + K+ + S IC Sbjct: 655 DVLLISQNGYALRFNIEEVPVVGAKAAGVKTMNLKEDDVLQSAFIC 700 >gi|256384366|gb|ACU78936.1| DNA topoisomerase IV, A subunit [Mycoplasma mycoides subsp. capri str. GM12] gi|256385198|gb|ACU79767.1| DNA topoisomerase IV, A subunit [Mycoplasma mycoides subsp. capri str. GM12] gi|296455460|gb|ADH21695.1| DNA topoisomerase IV, A subunit [synthetic Mycoplasma mycoides JCVI-syn1.0] Length = 898 Score = 371 bits (952), Expect = e-100, Method: Compositional matrix adjust. Identities = 238/743 (32%), Positives = 424/743 (57%), Gaps = 41/743 (5%) Query: 24 FALEE----RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 + LEE R+ YA I+ERA+PD+RDG KPV RRI++AM+++ L F +KKSAR+V Sbjct: 10 YPLEELLGNRFSRYAKYIIQERALPDVRDGLKPVQRRILYAMNQLNLTFDKPYKKSARVV 69 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 GEVIGK HPHGD S+YD++VR++Q + PL+ QGN G+IDGDSAAA RYTEAR+T++ Sbjct: 70 GEVIGKYHPHGDSSIYDAMVRMSQWWKVNIPLVDMQGNNGSIDGDSAAAMRYTEARLTKI 129 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 + L+L+ ++++ V F +++ ++EP V PS FPN+L NG +GIA G AT++P HN+ EI Sbjct: 130 SNLLLEDLEKNTVIFSPNFDDSETEPTVLPSYFPNILVNGATGIAAGYATNMPPHNLSEI 189 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 +A++++I NP I+I+++L+ + GPDFPTG II ++++ I E++ G+G + ++W E Sbjct: 190 IDASISIIKNPNITIDQILKIVKGPDFPTGAII-QNKQGIREAFLTGKGKVIISSKWHQE 248 Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319 + IVV EIPY+V K L++KI ++I +++IRDE+ ++ N Sbjct: 249 KNN-----IVVDEIPYEVVKQDLVKKIGDVIDNNPNLGIKEIRDETDRKGLRIVIELNEK 303 Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379 + + + + +F + + + N N++ + + P+ + L I+K +++H +EV +R+ F Sbjct: 304 ANLETVRKFLFKSTWLSVSYNYN-NIIIVDKQPKQLGLIDIIKAYISHYKEVFIKRTEFN 362 Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDKPKPV--MVSRFSLTENQVDAILNLRL 436 + + R+EI+ GL+ A +DE+I +IR +E++ + +V F+ T NQ AI+++RL Sbjct: 363 LNKANLRLEIVNGLIKALSILDEVIKVIRKSENRIDAINNLVKTFNFTTNQSTAIVDMRL 422 Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496 L + ++ E L+ + +K +LN+ N+I + EVK+ F G +R Sbjct: 423 YRLTSTDVNKLLLEKTELIDKIKKYQEILNNNLVLDNEIISRLEEVKKQF------GIKR 476 Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD---LSALHFKEGDSLKI 553 + E D Q+ +I ++ I + IS G+I+ + ++ ++ LS+ K D Sbjct: 477 KSQVEDLVEDLDVDQKEVIIEKEINLWISKDGYIKVIDNNILNKNELSSFGKKPNDMWIS 536 Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQDIVTAFV---- 607 D ++L+S Y++P + + + G I + N+ I+ AF+ Sbjct: 537 QGVCSNLDHLILVSDQANYYSIPLYKIANSKWKDQGVHINSVATTQPNETIINAFIIKEF 596 Query: 608 YDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTF--LKVSSEEKMKL--VVKVTGDHV 661 +ST LL+VS G +++ ++I K K+F +K+S ++ + ++ + Sbjct: 597 INSTQHLLLVSKNG---LIKRTQISDLETKIFNKSFKIMKISDDDSLVYADLISSKTSYC 653 Query: 662 AVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYN 720 ++ +N + ++I+ IP S KGV+ + KD I + + + I + +Y Sbjct: 654 CIITKNGYAVRYNIEDIPVQSTISKGVKAANLKDDYIISALSLDNNKDV-LIFTNKNNYK 712 Query: 721 RSENDLLG-WLGKRGGVGSLVPK 742 R + +L+ ++ + G+ LV K Sbjct: 713 RLDQNLIPIYIRPKKGIRILVEK 735 >gi|315225744|ref|ZP_07867532.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Parascardovia denticolens DSM 10105] gi|315119876|gb|EFT83008.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Parascardovia denticolens DSM 10105] Length = 922 Score = 370 bits (951), Expect = e-100, Method: Compositional matrix adjust. Identities = 222/630 (35%), Positives = 355/630 (56%), Gaps = 40/630 (6%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 +K++ L+ + E YLAYALS I ERA+PD+RDG KPVHRR+++AM + G + K + Sbjct: 42 IKSMDLQQEMRESYLAYALSVIVERALPDVRDGMKPVHRRVVYAMYDGGYRPDRGYNKCS 101 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+V+GK HPHGD ++YD+LVR+AQ + RY L+ GQGNFG+ D AAA RYTE RM Sbjct: 102 RVVGDVMGKYHPHGDAAIYDTLVRMAQYWSMRYLLVDGQGNFGSPGDDPAAAMRYTECRM 161 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 +A +++ +D+D VDF Y+ + EP V PS+FPNLL NG++GIAVGMAT+IP HN+ Sbjct: 162 APLAMELVRDIDKDTVDFVPNYDGKTQEPTVLPSRFPNLLVNGSAGIAVGMATNIPPHNM 221 Query: 197 QEICEAALALIDNPEISIEKLLEYII----GPDFPTGGIIVESRESIVESYRLGRGGFRV 252 +E+ + +D+PE S E+LL +I GPDFPTG I+ + I ++YR GRG + Sbjct: 222 REVAQGVHWALDHPEASREELLNNLIAIIKGPDFPTGATIL-GHKGIEQAYRTGRGLITM 280 Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV--R 310 RA EE+ G C+VVTE+PYQV RL I E + +I + D+RDE++ R Sbjct: 281 RAVVNTEEIN-GRLCLVVTELPYQVNPDRLASSIREAVRDGKIQGIADMRDETSGRTGQR 339 Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370 +VL K R P +++ +++ + ++ F NM L G VP+ + LD ++ W++H+ E Sbjct: 340 LVLVLK-RDAVPKVILNNLYKHTQLQQTFGANMLALVDG-VPRTLSLDAFIRHWISHQLE 397 Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQ 427 V+ RR+ + + + R IL+G L A I+E+IA+IR D+ + ++ + + Q Sbjct: 398 VVDRRTKYLKREAEERDHILQGYLKALDMIEEVIALIRRSPDVDQARTGLMDLLDVDQVQ 457 Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487 DAIL ++LR L LE +I E + L+ + + +L ++Q + E+ E+ + + Sbjct: 458 ADAILAMQLRRLAALERQKIIDEHEELMRKIADYNDILAKPERQRAIVGDEMDEIVDKYG 517 Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------D 539 RRT S + +I +E + V +++ G+I+ K+ Sbjct: 518 DD-----RRTRILPFSGEMNV---EDLIAEENVVVTVTHSGYIKRTKADEYRAQHRGGKG 569 Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLI 594 + +E D + T + +L + +G K Y +P G+ S G+ + L+ Sbjct: 570 IKGTRLREDDVVDHFFLTSTHNWLLFFTNEGRVYRIKGYEVPEGSRDS---KGQHVANLL 626 Query: 595 DLNHN---QDIVTAFVYDSTCKLLVVSSKG 621 L + Q +++ YD L++ + G Sbjct: 627 QLGPDEKIQQVLSIHDYDEAKYLVLATRSG 656 >gi|227831839|ref|YP_002833546.1| DNA gyrase subunit A [Corynebacterium aurimucosum ATCC 700975] gi|262183104|ref|ZP_06042525.1| DNA gyrase subunit A [Corynebacterium aurimucosum ATCC 700975] gi|227452855|gb|ACP31608.1| DNA gyrase subunit A [Corynebacterium aurimucosum ATCC 700975] Length = 862 Score = 370 bits (951), Expect = e-100, Method: Compositional matrix adjust. Identities = 254/782 (32%), Positives = 415/782 (53%), Gaps = 55/782 (7%) Query: 6 ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65 +S++N + + ++ + + +E Y+ YA+S I RA+P++RDG KPVHRRI++AM + G Sbjct: 1 MSDNNGDLFDRIQPIDINEEMESSYIDYAMSVIVGRALPEVRDGLKPVHRRILYAMYDSG 60 Query: 66 LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125 + KSAR V + +G+ HPHGD ++YD+LVRLAQP+ RYPL+ GQGNFG+ D Sbjct: 61 YRPDRGYVKSARPVSDTMGQFHPHGDSAIYDTLVRLAQPWNMRYPLVDGQGNFGSRGNDG 120 Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185 AA RYTE RMT +A +++ + E+ VDF Y+ + EP + PS+ PNLL NG+ GIAV Sbjct: 121 PAAMRYTECRMTPLAMEMVRDIRENTVDFAPNYDGKTQEPTILPSRVPNLLMNGSGGIAV 180 Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLL----EYIIGPDFPTGGIIVESRESIVE 241 GMAT+IP HN+ E+ EA L+DNP S E+ L E + GPDFPT G+IV + I + Sbjct: 181 GMATNIPPHNLNELAEAIYWLLDNPNASEEEALAACMERVKGPDFPTAGLIV-GDQGIKD 239 Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301 +Y GRG R+R +EEVG IV+TE+PYQV +I IAE ++ +I + I Sbjct: 240 AYTTGRGSIRMRGVTSIEEVG-NRQTIVITELPYQVNPDNMISNIAESVVNGKIAGIAKI 298 Query: 302 RDESAEDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359 DES++ V RIV+ K R +++ +++ S ++T F NM + G VP+ + LD Sbjct: 299 EDESSDRVGMRIVVTLK-RDAVARVVLNNLYKHSQLQTSFGANMLSIVDG-VPRTLRLDQ 356 Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPV 416 +L ++AH+ EV+ RR+ FR+ ++R IL+GL+ A +DE+IA+IR ++ + Sbjct: 357 MLSYYVAHQIEVIVRRTQFRLDEAEKRAHILRGLVKALDMLDEVIALIRRSPTVEEAREG 416 Query: 417 MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476 ++ + E Q DAIL +RLR L LE +I EL + + +L ++Q + Sbjct: 417 LMQLLGVDEIQADAILAMRLRRLAALERQKIIDELAEIEEIIADLKDILAREERQREIVH 476 Query: 477 CEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSH 536 E+ E+ E + RRT ++ A + +I +E + V I+ G+ + K Sbjct: 477 DELEEIVEKYGDE-----RRT---QIVAASGDVSDEDLIARENVVVTITATGYAKRTKVD 528 Query: 537 SVD--------LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR-GH 586 + + K+ D +K T D IL + G+ Y L A L +GR Sbjct: 529 AYKAQKRGGKGVRGAELKQDDIVKNFFVCSTHDWILFFTNFGRVYRLKAYELPEAGRTAR 588 Query: 587 GEAIQLLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEII-ANTRKGKTFL 642 G+ + L++ + I Y+ L++ + +G V++S + + + + Sbjct: 589 GQHVANLLEFQPEEKIAQVIQIQSYEDAPYLVLATQQGR---VKKSRLTDYESARSAGLI 645 Query: 643 KVSSEEKMKLV---VKVTGDHVAVVGENRKLLIFSI--DQIPEMSRG----KGVRLQSYK 693 ++ E L+ + GD + + E + + F+ DQ+ M R KG+R + Sbjct: 646 AINLNEGDALIGAQLVNEGDDILLTSEQGQAIRFTADDDQLRPMGRATAGVKGMRFR--- 702 Query: 694 DGGISDVICFKICEG--LTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFL 751 G ++ + + ++G R+ + G RGG+G + K P+ GK + Sbjct: 703 --GDDQLLSMSVVSDGQFLLVATSGGYGKRTAIEEYTPQG-RGGLGVMTFKYTPKRGKLI 759 Query: 752 SS 753 ++ Sbjct: 760 AA 761 >gi|322375399|ref|ZP_08049912.1| DNA topoisomerase IV, A subunit [Streptococcus sp. C300] gi|321279662|gb|EFX56702.1| DNA topoisomerase IV, A subunit [Streptococcus sp. C300] Length = 826 Score = 370 bits (951), Expect = e-100, Method: Compositional matrix adjust. Identities = 226/709 (31%), Positives = 398/709 (56%), Gaps = 33/709 (4%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 N++ +SL + ER+ Y+ I++RA+PD+RDG KPV RRI+++M++ G F +++KS Sbjct: 3 NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDGNTFDKSYRKS 62 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 A+ VG ++G HPHGD S+YD++VR++Q + R L+ GN G++DGD AA RYTEAR Sbjct: 63 AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 ++++A +LQ +++ V F +++ + EP V P+ FPNLL NG++GI+ G AT IP HN Sbjct: 123 LSEIAGYLLQDIEKKTVSFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 182 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 + E+ +A + +ID+P ++KL+E++ GPDFPTGGII + R+ I ++Y G+G VR++ Sbjct: 183 LAEVIDATVYMIDHPTAKVDKLMEFLPGPDFPTGGII-QGRDEIKKAYETGKGRVVVRSK 241 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315 +E++ G IV+TEIPY++ K+ L++KI ++ + ++ + ++RDES D + Sbjct: 242 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 301 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 + + +L++ +F +D++ + NM + P+ + + IL ++AHRREV+ R Sbjct: 302 LKKDANTELVLNYLFKYTDLQINYNFNMVAID-NFTPRQVGIVPILSSYIAHRREVILAR 360 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432 S F + ++R+ I++GL+ +DE+IA+IR N+ K + + TE Q +AI+ Sbjct: 361 SRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYEFTEEQAEAIV 420 Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492 L+L L + ++ E L + + +++ + +N + E+REVK+ F+ S Sbjct: 421 TLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATS--- 477 Query: 493 GRRRTTFCEVSRA---DKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FK 546 R +T + ++ D A+L I +E V ++ G+I+ S S L + Sbjct: 478 --RLSTLEDTAKVIEIDTASL----IAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKR 531 Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIV 603 + D L A TT +L+ +T G P L R GE + Q + + N++I+ Sbjct: 532 DDDRLIFVQSAKTTQHLLMFTTLGNVIYRPIHELADIRWKDIGEHLSQSITNFETNEEIL 591 Query: 604 TAFV---YDSTCKLLVVSSKGNAFIVEESEIIA-NTRKGKT--FLKVSSE-EKMKLVVKV 656 A V +D + G VE E T K K+ + K+ E +++ V + Sbjct: 592 YAEVVDQFDDATTYFAATRLGQIKRVERKEFSPWRTYKSKSVKYAKLKDETDQIVAVAPI 651 Query: 657 TGDHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYK--DGGISDVIC 702 D V ++ +N L F+I+++P + ++ GV+ + K D + IC Sbjct: 652 RLDDVLLISQNGYALRFNIEEVPVVGAKAAGVKAMNLKADDALQAAFIC 700 >gi|284028010|ref|YP_003377941.1| DNA gyrase subunit A [Kribbella flavida DSM 17836] gi|283807303|gb|ADB29142.1| DNA gyrase, A subunit [Kribbella flavida DSM 17836] Length = 907 Score = 370 bits (951), Expect = e-100, Method: Compositional matrix adjust. Identities = 221/632 (34%), Positives = 358/632 (56%), Gaps = 39/632 (6%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 + ++ + L+ +++ YL YA++ I RA+P++RDG KPVHRRI++AM + G F K Sbjct: 11 DRIEPLDLQTEMQQSYLDYAMAVIVGRALPEVRDGLKPVHRRILYAMYDGGYRPDRGFSK 70 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 +RIVG+V+G+ HPHGD ++YD+LVRLAQP+V R P+I QGNFG+ D AAA RYTE Sbjct: 71 CSRIVGDVMGQYHPHGDSAIYDTLVRLAQPWVMRAPMIQSQGNFGSPGNDPAAAMRYTEC 130 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 R+ +A +++ +D++ VDFR Y+ EPV+ PS+FPNLL NG++GIAVGMAT IP H Sbjct: 131 RLAPLAMEMVRDIDQETVDFRPNYDGRSQEPVILPSRFPNLLVNGSAGIAVGMATQIPPH 190 Query: 195 NVQEICEAALALIDNPEISIEKLL----EYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250 N++E+ AA ++NP+ S E++L E+I GPDFP G +IV + I ++YR GRG Sbjct: 191 NLREVAAAANWCLENPDASQEEVLAACMEHIKGPDFPNGALIV-GYKGIDDAYRTGRGSV 249 Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV- 309 +RA +EE +G +VV+E+PY V L +KIAEL+ ++ + DIRD+++ Sbjct: 250 TMRAVVDIEEDAKGRTSLVVSELPYMVNPDNLAQKIAELVNTGKMTGIADIRDDTSSRTG 309 Query: 310 -RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368 R+V+ K R P +++ +++ + ++ F NM L G VP+ + LD + W+ H+ Sbjct: 310 QRLVIVLK-RDAQPRVVLNNLYKHTQLQDTFGCNMLALVDG-VPRTLSLDLFITHWIDHQ 367 Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTE 425 EV+ RR+ +R++ ++ + +G + A +DE+IA+IR D+ + ++S + E Sbjct: 368 IEVIQRRTRYRLREAEKNAHVFRGYVKALDALDEVIALIRRSPDVDEARQGLISLLDIDE 427 Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485 Q AIL+++LR L LE +I L+ L A ++ +L +Q + + E+ E+ + Sbjct: 428 IQAQAILDMQLRRLAALERQKIIDRLNELEAVIADLEDILADPVRQRHIVRDELAEIVDK 487 Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545 F RRTT AD Q ++ E + V I+ G+ + K+ DL + Sbjct: 488 FGDD-----RRTTIIA---ADGDLSVQDLVPDEDVVVTITRGGYAKRTKT---DLYRVQN 536 Query: 546 KEGDSLK---------IALHAHTTDR--ILLLSTDGKAYTLPAGNLL-SGR-GHGEAIQL 592 + G ++ I TT+ +L +T G+ Y L S R G + Sbjct: 537 RGGKGVRGATMRAEDEIGHFFATTNHHWMLFFTTKGRVYRAKVWQLPESARDAKGSHVAG 596 Query: 593 LIDLNHNQDIVTAFV---YDSTCKLLVVSSKG 621 L+ +++I YD L++ + KG Sbjct: 597 LLSFQPDEEIAQVLTLRDYDQADYLVLATKKG 628 >gi|256961878|ref|ZP_05566049.1| DNA topoisomerase IV subunit A [Enterococcus faecalis Merz96] gi|256952374|gb|EEU69006.1| DNA topoisomerase IV subunit A [Enterococcus faecalis Merz96] Length = 820 Score = 370 bits (951), Expect = e-100, Method: Compositional matrix adjust. Identities = 212/618 (34%), Positives = 366/618 (59%), Gaps = 19/618 (3%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 + V+ ++L + +R+ Y+ I+ERA+PD+RDG KPV RRI+ +M++ G F F+K Sbjct: 5 QEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFSMNKDGNTFDKGFRK 64 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 SA+ VG ++G HPHGD S+YD++VRL+Q + R LI GN G++DGD AA RYTEA Sbjct: 65 SAKSVGNIMGNYHPHGDISIYDAMVRLSQDWKLREVLIEMHGNNGSMDGDPPAAMRYTEA 124 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 R++Q++ +L+ +D++ VDF +++ + EP V P+K+PNLL NG++GI+ G AT IP+H Sbjct: 125 RLSQLSGELLKDIDKNTVDFVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATEIPTH 184 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 N+ EI + + LID+P S+EKL+EYI GPDFPTGGI+ + + I ++Y GRG +RA Sbjct: 185 NLAEIIDGTVYLIDHPNASLEKLMEYIPGPDFPTGGIL-QGKAEIKKAYETGRGKVILRA 243 Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314 + +E + G IV++EIPY+V K+ L++K+ E+ + K++ + ++RDES ++ Sbjct: 244 KTKIEPLKGGKQQIVISEIPYEVNKATLVKKMDEIRLNKKVDGIAEVRDESDRTGLQIVV 303 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 + ++ + ++ +F ++++ + NM + PQ + L IL+ ++ HR+ V+ Sbjct: 304 ELKKDVNAEGILNYLFKNTELQINYNFNMVAID-NMTPQQVGLKRILESYITHRKSVIIN 362 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDK--PKPVMVSRFSLTENQVDAI 431 R F + +R I+ GL+ A +D++IA IR ++DK K +VS ++ TE Q +AI Sbjct: 363 RCQFELDKARKREHIVAGLIKALSILDKVIATIRGSKDKKDAKKNLVSDYAFTEEQAEAI 422 Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491 + L+L L + ++ E L + ++ ++LN+ K+ ++ + E+REVK+ + Sbjct: 423 VTLQLYRLTNTDITDLQEEAKTLEQQIAELLNILNNEKELFSVMKKELREVKKQY----- 477 Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSVDL-SALHFKEG 548 G R T E + ++ +E + V +++ G+I+ S++S++ + KEG Sbjct: 478 -GNPRLTQIEEEIQEIKIETAVLVAQEDVVVTVTHEGYIKRSSIRSYTASKPEEIGMKEG 536 Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAI-QLLIDLNHNQDIVTA 605 D L A +T D +LL++ G P L L + GE I Q +++L ++ I+ Sbjct: 537 DFLLYAGEVNTLDHLLLVTNKGNMIYRPVHELPDLRWKEIGEHISQTILNLAIDESIIAV 596 Query: 606 FVYD--STCKLLVVSSKG 621 + Y S K V +K Sbjct: 597 YPYKELSPTKTFVFITKA 614 >gi|297570619|ref|YP_003696393.1| DNA gyrase subunit alpha [Arcanobacterium haemolyticum DSM 20595] gi|296930966|gb|ADH91774.1| DNA gyrase, A subunit [Arcanobacterium haemolyticum DSM 20595] Length = 854 Score = 370 bits (951), Expect = e-100, Method: Compositional matrix adjust. Identities = 206/527 (39%), Positives = 317/527 (60%), Gaps = 21/527 (3%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 +K V L+ +E YL YA+S I RA+PD+RDG KPVHRR+I+AM + G ++F KS Sbjct: 13 IKDVDLQREMETSYLDYAMSVIVGRALPDVRDGMKPVHRRVIYAMWDGGYRPDSSFSKSV 72 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 +IVG+V+G HPHGD ++YD++VRL QP+ RYPL++GQGNFG AAA RYTEARM Sbjct: 73 KIVGDVMGNFHPHGDAAIYDTMVRLVQPWNMRYPLVAGQGNFGTAGDLGAAAPRYTEARM 132 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 Q+A +++ ++E+ VDF ++ EP V ++FPNLL NG+ GIAVGMAT IP HN+ Sbjct: 133 AQLAVEMVRDINEETVDFVPNFDGSVQEPTVLTARFPNLLVNGSEGIAVGMATRIPPHNL 192 Query: 197 QEICEAALALIDNPEIS----IEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252 +E+ +DNPE + ++ LLE + GPDFPTG I+ ++ I YR G G Sbjct: 193 REVAAGVQWFLDNPEATREELLDALLERVKGPDFPTGATILGTK-GIESMYRTGNGSITQ 251 Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV--R 310 RA V+E+ G C+VVT++P+QV RL++K+ E I R+P + DIRDES+ R Sbjct: 252 RAIVEVDEIN-GRQCLVVTDLPFQVNPDRLLDKMVEGIKDGRLPGIADIRDESSGRAGQR 310 Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370 IV+ K ++ +++ +++ + M+ FP NM L G VP+ + LDG ++ W+ H+ E Sbjct: 311 IVIVLKKDAV-AKVVLNNLYKHTQMQNNFPANMLALVDG-VPRTLSLDGFVRHWVNHQIE 368 Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQ 427 V+ RR+ FR++ + R+ IL+GL+ A +DE+IA+IR D+ + ++ + E Q Sbjct: 369 VIRRRTEFRLRKVLERLMILEGLVKALDALDEVIALIRRSPTVDEAREGLMKLLDINEIQ 428 Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487 D IL ++LR L LE +I E D LA ++ +L ++Q ++ E+ ++ F Sbjct: 429 ADHILAMQLRRLAALERQKILDERDEKLALRDDYQDILAKPERQRTIVSDEVGDIVAKFG 488 Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLK 534 RRT D + +I ++ + V I+ G+++ K Sbjct: 489 DD-----RRTKILPF---DGEVSDEDLIPEDDVVVTITRSGFVKRTK 527 >gi|239999134|ref|ZP_04719058.1| DNA gyrase subunit A [Neisseria gonorrhoeae 35/02] gi|268594969|ref|ZP_06129136.1| DNA gyrase subunit A [Neisseria gonorrhoeae 35/02] gi|268548358|gb|EEZ43776.1| DNA gyrase subunit A [Neisseria gonorrhoeae 35/02] Length = 916 Score = 370 bits (951), Expect = e-100, Method: Compositional matrix adjust. Identities = 226/628 (35%), Positives = 352/628 (56%), Gaps = 65/628 (10%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 VSL + + YL YA+S I RA+PD+RDG KPVHRR+++AM E+ ++ AA+KKSARIV Sbjct: 19 VSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIV 78 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGD +VYD++VR+AQ F RY LI GQGNFG++DG +AAA RYTE RM ++ Sbjct: 79 GDVIGKYHPHGDFAVYDTIVRMAQNFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMAKI 138 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 + +L ++E+ V+F Y+ + EP+V P++FP LL NG+SGIAVGMAT+IP HN+ + Sbjct: 139 SHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGSSGIAVGMATNIPPHNLTDT 198 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 A L L+D P+ I++L++ I PDFPTG I + E Y+ GRG +R + +E Sbjct: 199 INACLRLLDEPKTEIDELIDIIQAPDFPTGATIY-GLGGVREGYKTGRGRVVMRGKTHIE 257 Query: 260 EVGRGS--WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317 +G+ IV+ EIPYQV K++L+EKI +L+ K + + ++RDES + V+ Sbjct: 258 PIGKNGEREAIVIDEIPYQVNKAKLVEKIGDLVREKTLEGISELRDESDKSGMRVVIELK 317 Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377 R+ + ++++ ++ L+ ++ F +NM VL G+ P+++ L IL E+L HRREV+ RR+ Sbjct: 318 RNENAEVVLNQLYKLTPLQDSFGINMVVLVDGQ-PRLLNLKQILSEFLRHRREVVTRRTL 376 Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSR-------------- 420 FR++ I +G +A NIDEII +I+ N + K +++R Sbjct: 377 FRLKKARHEGHIAEGKAVALSNIDEIIKLIKESPNAAEAKEKLLARPWRSSLVEEMLTRS 436 Query: 421 ----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458 + L+E Q DAIL + LR+L L++ +I NL+ + Sbjct: 437 GLDLEMMRPEGLAANIGLKKQGYYLSEIQADAILRMSLRNLTGLDQKEIIESYKNLMGKI 496 Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518 +L+ ++ I E+ E+K T+ G R + D A + +I + Sbjct: 497 IDFVDILSKPERITQIIRDELEEIK------TNYGDERRSEINPFGGDIA--DEDLIPQR 548 Query: 519 PITVVISNRGWIRSLKSHSVDL--------SALHFKEGDSLKIALHAHTTDRILLLSTDG 570 + V +++ G+I++ + A K+ D ++ A+T D ++ + G Sbjct: 549 EMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDYLMCFTNLG 608 Query: 571 KA-----YTLPAGNLLS-GRGHGEAIQL 592 K Y LP G S GR IQL Sbjct: 609 KCHWIKVYKLPEGGRNSRGRPINNVIQL 636 >gi|37521619|ref|NP_924996.1| DNA gyrase subunit A [Gloeobacter violaceus PCC 7421] gi|35212617|dbj|BAC89991.1| DNA gyrase subunit A [Gloeobacter violaceus PCC 7421] Length = 825 Score = 370 bits (950), Expect = e-100, Method: Compositional matrix adjust. Identities = 249/699 (35%), Positives = 390/699 (55%), Gaps = 34/699 (4%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 V +L ++ YL YA+S I RA+PD+RDG KPVHRRI+ AM E+GL F+K A Sbjct: 16 VVPTALHSEMQRSYLEYAMSVIVGRALPDVRDGLKPVHRRILFAMHELGLAPDRPFRKCA 75 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+V+GK HPHGD +VYD+LVRL Q F RYPL+SG GNFG+ID D AA RYTE R+ Sbjct: 76 RVVGDVLGKYHPHGDTAVYDALVRLVQDFSSRYPLLSGHGNFGSIDNDPPAAMRYTECRL 135 Query: 137 TQVA-ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 V + +L +D+ V+F D ++ EP V P++ P LL NG++GIAVGMAT+IP HN Sbjct: 136 AAVGVDALLAEIDDQTVEFTDNFDGSQREPEVLPARLPVLLLNGSAGIAVGMATNIPPHN 195 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 + E+ + +ALIDNPE++ E+LL I GPDFPTGG I+ + E I E+Y GRG +R Sbjct: 196 LGELVDGLVALIDNPELADEQLLRIIPGPDFPTGGQIIGT-EGIREAYLTGRGSITMRGI 254 Query: 256 WCVEEVGRG---SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDVRI 311 EEVG G I+VT +PYQV K+ IEK+AEL+ ++ + D+RDES E VR+ Sbjct: 255 THCEEVGSGRRRKPAIIVTALPYQVNKAAWIEKVAELVNLGKVNGISDLRDESNREGVRV 314 Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371 VL K R P+ ++ ++ L+ ++ F + L G+ P+++ L +L+++L R Sbjct: 315 VLEMK-REARPEAILAGLYRLTPLQANFGTILLTLVGGQ-PRLLKLRELLEQFLEFRVAT 372 Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQV 428 L RR + ++ R L+G L+A N+ I+ ++ + + + L+E Q Sbjct: 373 LTRRIQYNLRRASERAHQLEGQLVALANLQPIVQMLSAARDAAQARAELEASYGLSERQS 432 Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488 + IL + LR L +L+ ++ SE L + ++ S L+S ++ + E+R++K+ K Sbjct: 433 EEILQMPLRRLTQLDRERLASEHRELREKVIELQSQLDSRRKLLGLLKRELRDLKK---K 489 Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF--- 545 D R T E A TL + + E + V +++RG++R + + + + + Sbjct: 490 HAD---PRRTCIEARTAPLPTLAEITSDDE-VVVQLTHRGYVRRIPAAAFERRSRSRRAV 545 Query: 546 ---KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQ 600 ++ D + + T + +L+++ G+AY+L + R G + L+ + Q Sbjct: 546 SRTEDNDFVVESYPTRTRNELLVITRSGRAYSLKVSEIPETGPRSRGTPLVTLLSIQGEQ 605 Query: 601 DIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657 I FV Y L++++ +G + SE T +G LK+S E+++ V T Sbjct: 606 -IAATFVRENYPPDLFLVLLTREGRIKKLLLSECANLTGRGLMMLKLSEEDQLIQVGLAT 664 Query: 658 GDHVAVVGENR-KLLIFSID--QIPEMSRGKGVRLQSYK 693 VVG + +LL F D Q+P M R + LQ+ K Sbjct: 665 AHSQIVVGTSAGRLLRFVADEAQLPAMGR-SALGLQAIK 702 >gi|283457095|ref|YP_003361658.1| type IIA topoisomerase, A subunit [Rothia mucilaginosa DY-18] gi|283133073|dbj|BAI63838.1| type IIA topoisomerase, A subunit [Rothia mucilaginosa DY-18] Length = 882 Score = 370 bits (950), Expect = e-100, Method: Compositional matrix adjust. Identities = 207/545 (37%), Positives = 328/545 (60%), Gaps = 23/545 (4%) Query: 3 VDNISNS---NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIH 59 VD +SN N +++ V L+ ++ YL YA++ I RA+PD+RDG KPVHRR+I+ Sbjct: 18 VDVVSNGGAENVDHHGHIEQVDLQTEMQRSYLDYAMAVIIGRALPDVRDGLKPVHRRVIY 77 Query: 60 AMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG 119 AM + G +F K AR+VG+V+G+ HPHGD ++YD+LVRL Q ++ RYPL GQGNFG Sbjct: 78 AMYDGGYRPDRSFNKCARVVGDVMGQFHPHGDSAIYDTLVRLIQSWIMRYPLALGQGNFG 137 Query: 120 NIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANG 179 + D AAA RYTE +M +A +++ ++ED VDF+ Y+ + EP V P++ PNLL NG Sbjct: 138 SPGNDGAAAPRYTETKMAPIALEMVRDINEDTVDFQPNYDGKSLEPTVLPARIPNLLVNG 197 Query: 180 TSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYII----GPDFPTGGIIVES 235 +SGIAVGMAT+IP HN++E+ E + NP + ++LL ++ GPDFPTG I+ + Sbjct: 198 SSGIAVGMATNIPPHNLREVAEGVEWFLKNPHATNDELLNALMARIKGPDFPTGAQILGT 257 Query: 236 RESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRI 295 + I ++YR GRG +RA VEE+ G C+VVTE+PYQ L KIAELI ++ Sbjct: 258 K-GIEDAYRTGRGSITMRAVVNVEEI-HGRTCLVVTELPYQANPDNLAIKIAELIKDGKV 315 Query: 296 PLLEDIRDESAEDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQ 353 + D+RDE++ R+V+ K R P +++ +++ + ++ F NM + G VP+ Sbjct: 316 TGIADLRDETSGRTGQRLVIVLK-RDASPKVVLNNLYKHTQLQENFSANMLAIVDG-VPR 373 Query: 354 VMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NE 410 + LD ++ W+ H+ +V+ RR+ +R++ + IL+GLL A +DE+IA+IR Sbjct: 374 TLSLDAFVRHWVDHQMDVIVRRTRYRLRQAEEEAHILRGLLKALDALDEVIALIRRSPTA 433 Query: 411 DKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQ 470 D+ + ++ + E Q AILN++LR L LE +I+ D L+ + ++++ S + Sbjct: 434 DEARSGLMEFLQIDEAQAQAILNMQLRRLAALERQKIQDRHDELMRMIAEYNAIIASETR 493 Query: 471 QWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI 530 Q I+ E+ EI ++ D RRT D + + +I +E + V I+ G+I Sbjct: 494 QREIIS---EELGEIVNRYGD--ERRTQIMYGYNGDMS--MEDLIPEEEVVVTITRGGYI 546 Query: 531 RSLKS 535 + +S Sbjct: 547 KRTRS 551 >gi|254773059|ref|ZP_05214575.1| DNA gyrase subunit A [Mycobacterium avium subsp. avium ATCC 25291] Length = 839 Score = 370 bits (950), Expect = e-100, Method: Compositional matrix adjust. Identities = 217/584 (37%), Positives = 337/584 (57%), Gaps = 33/584 (5%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 + V+ V ++ ++ Y+ YA+S I RA+P++RDG KPVHRR+++AM + G + K Sbjct: 14 DRVEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAMYDSGFRPDRSHAK 73 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 SAR V E +G HPHGD S+YD+LVR+AQP+ RYPL+ GQGNFG+ D AA RYTEA Sbjct: 74 SARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSPGNDPPAAMRYTEA 133 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 R+T +A +L+ +DE+ VDF Y+ EP V PS+FPNLLANG+ GIAVGMAT+IP H Sbjct: 134 RLTPLAMEMLRQIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSGGIAVGMATNIPPH 193 Query: 195 NVQEICEAALALIDN----PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250 N+ E+ EA +DN E ++ ++E + GPDFPT G+IV + + I ++Y+ GRG Sbjct: 194 NLGELAEAVFWALDNYEADEEATLAAVMERVKGPDFPTSGLIVGT-QGIADAYKTGRGSI 252 Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV- 309 R+R VEE RG +V+TE+PYQV I IAE + ++ + +I D+S++ V Sbjct: 253 RMRGVVEVEEDSRGRTSLVITELPYQVNHDNFITSIAEQVRDGKLAGISNIEDQSSDRVG 312 Query: 310 -RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368 RIV+ K R +++ +++ + ++T F NM + G VP+ + LD +++ ++ H+ Sbjct: 313 LRIVIELK-RDAVAKVVLNNLYKHTQLQTSFGANMLAIVDG-VPRTLRLDQLIRHYVDHQ 370 Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTE 425 +V+ RR+++R++ + R IL+GL+ A +DE+IA+IR D + ++ + E Sbjct: 371 LDVIVRRTTYRLRKANERAHILRGLVKALDALDEVIALIRASETVDIARQGLIELLDIDE 430 Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485 Q AIL+++LR L LE +I +L + AE ++ +L ++Q + E+ EI Sbjct: 431 IQAQAILDMQLRRLAALERQRIIDDLAKIEAEIADLEDILAKPERQRGIVRDEL---AEI 487 Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHS 537 K D R R + AD + +I +E + V I+ G+ RS K Sbjct: 488 VEKHGDARRTR-----IVAADGDVSDEDLIAREDVVVTITETGYAKRTKTDLYRSQKRGG 542 Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLP 576 + K+ D ++ T D IL +T G KAY LP Sbjct: 543 KGVQGAGLKQDDIVRHFFVCSTHDWILFFTTQGRVYRAKAYELP 586 >gi|218672927|ref|ZP_03522596.1| DNA topoisomerase IV subunit A [Rhizobium etli GR56] Length = 305 Score = 370 bits (950), Expect = e-100, Method: Compositional matrix adjust. Identities = 171/296 (57%), Positives = 227/296 (76%) Query: 455 LAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAM 514 L EK +I++LL S +QW +A EI EVK+ F+K+T++GRRRT F + AD+ +QQAM Sbjct: 8 LKEKGEIEALLASDDKQWQTVAWEIGEVKKKFAKATEVGRRRTQFADAPEADEQAIQQAM 67 Query: 515 IEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT 574 IEKEPITVVIS +GWIR+LK H D + L FKEGD LK+A A TTD+IL+++T GKA+T Sbjct: 68 IEKEPITVVISEKGWIRALKGHIADTATLTFKEGDGLKVAFPAQTTDKILIVTTGGKAFT 127 Query: 575 LPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIAN 634 L L GRGHGE +++++D++++Q ++TAFV+D K L+VS+ GN F+V E+E++AN Sbjct: 128 LGGDKLPGGRGHGEPLRIMVDMDNDQAVLTAFVHDPARKQLIVSTAGNGFVVAEAELVAN 187 Query: 635 TRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKD 694 TRKGK + V+ E+ +L+V V GDHVAVVGENRKLL+F + Q+PEMSRGKGVRLQ YKD Sbjct: 188 TRKGKQIMNVALPEETQLLVPVCGDHVAVVGENRKLLVFPLAQVPEMSRGKGVRLQRYKD 247 Query: 695 GGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKF 750 GGISDV CF I +GL W DSAGR++ +++++L WLG R G VPKGFPRSGKF Sbjct: 248 GGISDVRCFAISDGLVWEDSAGRTFTKNKDELAEWLGDRASAGRTVPKGFPRSGKF 303 >gi|313904730|ref|ZP_07838104.1| DNA gyrase, A subunit [Eubacterium cellulosolvens 6] gi|313470523|gb|EFR65851.1| DNA gyrase, A subunit [Eubacterium cellulosolvens 6] Length = 876 Score = 370 bits (950), Expect = e-100, Method: Compositional matrix adjust. Identities = 227/632 (35%), Positives = 366/632 (57%), Gaps = 35/632 (5%) Query: 13 VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72 V +N++ V L+ +E+ Y+ YA+S I RA+PD+RDG KPV RRI+++M E+ Sbjct: 7 VFDNIEEVDLKKKMEDSYIDYAMSVIASRALPDVRDGMKPVQRRILYSMIELNNGPDKPH 66 Query: 73 KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132 +K ARIVG+ +GK HPHGD S+Y ++V +AQ + RY L+ G GNFG++DGD AAA RYT Sbjct: 67 RKCARIVGDTMGKYHPHGDSSIYGAMVTMAQDWNMRYTLVDGHGNFGSVDGDGAAAMRYT 126 Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192 EAR+++++ ++ +++D VDF +++ + EP V P++FPNLL NG SGIAVGMAT+IP Sbjct: 127 EARLSKISMEMVADLNKDTVDFAPNFDDTEKEPTVLPARFPNLLVNGASGIAVGMATNIP 186 Query: 193 SHNVQEICEAALALIDN-----PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247 +HN+ E+ A + +I+N + ++++++ + GPDFPTGG I+ +R I E+YR GR Sbjct: 187 THNLTEVIAAVVKIINNRIDEDRDTELDEIMQIVKGPDFPTGGEILGTR-GIEEAYRTGR 245 Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA- 306 G RVR +E + G I++TE+PY V K+RLIEKIAEL+ K+I + I D S+ Sbjct: 246 GKVRVRGISSIESLPNGKSEIIITELPYMVNKARLIEKIAELVRDKKIDGITGISDHSSR 305 Query: 307 EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366 E +RIV+ + R + ++++ ++ + ++ F + M L + P+V+ L IL+ +L Sbjct: 306 EGMRIVIDVR-RDANANVILNKLYKHTQLQDTFGVIMLAL-VDNQPKVLNLLQILEYYLK 363 Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSL 423 H+ EV+ RR+ + + R IL+GLL A IDE+I IR ++ K ++++F Sbjct: 364 HQEEVVTRRTRYDLNKAQERAHILEGLLKALDLIDEVIHTIRASATTNEAKANLIAKFGF 423 Query: 424 TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483 TE Q AI+++RLR+L LE +++ E D L + ++ ++L K I EI+ + Sbjct: 424 TEAQAQAIVDMRLRTLTGLERDKLQGEFDELQKKIKEYQAILADRKVLLGVIRDEIQIIS 483 Query: 484 EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKS---HSVDL 540 + F G R T D T + +I + + +S+ G+I+ + H+ + Sbjct: 484 DKF------GDERRTRIGHDVYDITT--EDLIPNDNNVLTMSHLGYIKRMSPENFHAQNR 535 Query: 541 SALHFK-----EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLL 593 K E D ++ + D I+ + G+AYTL A + S G AI L Sbjct: 536 GGKGIKGTSNIENDYIEDLFMTMSHDYIMFFTNLGRAYTLKAYEIPEASRTARGTAIINL 595 Query: 594 IDLNHNQDIVTAFVYDSTCK----LLVVSSKG 621 + L + I TA + S K L + + KG Sbjct: 596 LQLMPGEKI-TAIIPVSEFKENQYLFMATKKG 626 >gi|294786214|ref|ZP_06751468.1| DNA gyrase, A subunit [Parascardovia denticolens F0305] gi|294485047|gb|EFG32681.1| DNA gyrase, A subunit [Parascardovia denticolens F0305] Length = 911 Score = 370 bits (950), Expect = e-100, Method: Compositional matrix adjust. Identities = 222/630 (35%), Positives = 355/630 (56%), Gaps = 40/630 (6%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 +K++ L+ + E YLAYALS I ERA+PD+RDG KPVHRR+++AM + G + K + Sbjct: 31 IKSMDLQQEMRESYLAYALSVIVERALPDVRDGMKPVHRRVVYAMYDGGYRPDRGYNKCS 90 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+V+GK HPHGD ++YD+LVR+AQ + RY L+ GQGNFG+ D AAA RYTE RM Sbjct: 91 RVVGDVMGKYHPHGDAAIYDTLVRMAQYWSMRYLLVDGQGNFGSPGDDPAAAMRYTECRM 150 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 +A +++ +D+D VDF Y+ + EP V PS+FPNLL NG++GIAVGMAT+IP HN+ Sbjct: 151 APLAMELVRDIDKDTVDFVPNYDGKTQEPTVLPSRFPNLLVNGSAGIAVGMATNIPPHNM 210 Query: 197 QEICEAALALIDNPEISIEKLLEYII----GPDFPTGGIIVESRESIVESYRLGRGGFRV 252 +E+ + +D+PE S E+LL +I GPDFPTG I+ + I ++YR GRG + Sbjct: 211 REVAQGVHWALDHPEASREELLNNLIAIIKGPDFPTGATIL-GHKGIEQAYRTGRGLITM 269 Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV--R 310 RA EE+ G C+VVTE+PYQV RL I E + +I + D+RDE++ R Sbjct: 270 RAVVNTEEIN-GRLCLVVTELPYQVNPDRLASSIREAVRDGKIQGIADMRDETSGRTGQR 328 Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370 +VL K R P +++ +++ + ++ F NM L G VP+ + LD ++ W++H+ E Sbjct: 329 LVLVLK-RDAVPKVILNNLYKHTQLQQTFGANMLALVDG-VPRTLSLDAFIRHWISHQLE 386 Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQ 427 V+ RR+ + + + R IL+G L A I+E+IA+IR D+ + ++ + + Q Sbjct: 387 VVDRRTKYLKREAEERDHILQGYLKALDMIEEVIALIRRSPDVDQARTGLMDLLDVDQVQ 446 Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487 DAIL ++LR L LE +I E + L+ + + +L ++Q + E+ E+ + + Sbjct: 447 ADAILAMQLRRLAALERQKIIDEHEELMRKIADYNDILAKPERQRAIVGDEMDEIVDKYG 506 Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV--------D 539 RRT S + +I +E + V +++ G+I+ K+ Sbjct: 507 DD-----RRTRILPFSGEMNV---EDLIAEENVVVTVTHSGYIKRTKADEYRAQHRGGKG 558 Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLI 594 + +E D + T + +L + +G K Y +P G+ S G+ + L+ Sbjct: 559 IKGTRLREDDVVDHFFLTSTHNWLLFFTNEGRVYRIKGYEVPEGSRDS---KGQHVANLL 615 Query: 595 DLNHN---QDIVTAFVYDSTCKLLVVSSKG 621 L + Q +++ YD L++ + G Sbjct: 616 QLGPDEKIQQVLSIHDYDEAKYLVLATRSG 645 >gi|162447246|ref|YP_001620378.1| DNA topoisomerase IV subunit A [Acholeplasma laidlawii PG-8A] gi|161985353|gb|ABX81002.1| DNA topoisomerase IV, subunit A [Acholeplasma laidlawii PG-8A] Length = 857 Score = 370 bits (950), Expect = e-100, Method: Compositional matrix adjust. Identities = 242/743 (32%), Positives = 401/743 (53%), Gaps = 46/743 (6%) Query: 10 NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69 + +EE ++ V L + R+ Y+ I++RA+PD RDG KPV RRI++AM +MGL F Sbjct: 9 DKFIEEKIEKVLLEDIMSSRFGRYSKYIIQDRALPDARDGLKPVQRRILYAMGQMGLAFN 68 Query: 70 AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129 ++KKSARI GEV+GK HPHGD S+Y+++VR++Q F R PL+ GN G+IDGDSAAA Sbjct: 69 KSYKKSARIAGEVMGKYHPHGDSSIYEAMVRMSQDFKMRVPLVDMHGNNGSIDGDSAAAM 128 Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189 RYTEAR+++ AE +L+ +D+ V+F +++E+ EP V P++FPNLL NG GI+ G AT Sbjct: 129 RYTEARLSKEAEFLLKDIDKRTVNFVPNFDDEEQEPTVLPARFPNLLVNGAMGISAGYAT 188 Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGG 249 IP HN+ E+ +A +ALIDNP I+ +++L+YI GPDFPTGG IV+ + I E+ G G Sbjct: 189 KIPPHNLNEVIDATIALIDNPNITNDEILKYIKGPDFPTGG-IVQGKAGIKEALTTGSGK 247 Query: 250 FRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AED 308 +RA+ VEE+ + IV+TEIPY+V K+ L+ +I L I I + +IRDE+ E Sbjct: 248 IIIRAKMNVEEMSKSQDRIVITEIPYEVNKADLVRQIDNLRINNNIEDILEIRDETDQEG 307 Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368 +RI + K + D + + SD++ + NM + R P + +LK +L H+ Sbjct: 308 LRIAIDLK-KGADAQFIQNYLLKSSDLQVNYNYNMVAILKHR-PVLSGAFELLKVYLEHQ 365 Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTE 425 +EV+ RS++ ++ +R I+ GL+ + E+I IR N+ K + RF +E Sbjct: 366 KEVVTNRSNYELERATKRNHIVDGLIQMTSVVSEVIEEIRKSKNKADSKENIQKRFGFSE 425 Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485 Q +AI+ L+L L + + E D L E +++ +L++ + I E++EV+ + Sbjct: 426 LQAEAIVMLQLYRLSTTDIQALLDEKDTLYKEITRLEQILSNERILLKTIKSELQEVQTL 485 Query: 486 FSKSTDLGRRRTTF---CEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA 542 RRT E + D ++ +I E V I+ G+++ SV S Sbjct: 486 LPSP-----RRTELEAEIETIKID----EKDLISDEQTYVAITKDGYVKRASLRSVVASK 536 Query: 543 -LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHN 599 + KE D++ +T D +LL + G+ LP + R G I ++ + Sbjct: 537 EVGLKENDAMLYEEELNTLDTLLLFTNLGQYIYLPVYKIEEQKWRDLGVYINNIVPTSKG 596 Query: 600 QDI-----VTAFVYDSTCKLLVVSSKGNAFIVEESEI-IANTRKGKTFLKVSSEEKMKLV 653 + I V+ F D K+L+ + +G V ++ ++ + +K+S ++++ V Sbjct: 597 ETIIRVLKVSDFSIDQ--KILLTTKQGQMKQVNLADFEVSRYNRPLRAMKLSKDDELVSV 654 Query: 654 VKVTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWID 713 D++ + ++ +L F +++P + GG+ + EG D Sbjct: 655 DYNQLDNIVAISKHGYVLRFDTEELP---------VYGLTAGGVK---SMALAEG----D 698 Query: 714 SAGRSYNRSENDLLGWLGKRGGV 736 ++ E+D +L RG + Sbjct: 699 EVAVAFYAKESDDFYFLTSRGHI 721 >gi|269977748|ref|ZP_06184708.1| DNA gyrase, A subunit [Mobiluncus mulieris 28-1] gi|306817508|ref|ZP_07451252.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Mobiluncus mulieris ATCC 35239] gi|307699857|ref|ZP_07636908.1| DNA gyrase, A subunit [Mobiluncus mulieris FB024-16] gi|269934052|gb|EEZ90626.1| DNA gyrase, A subunit [Mobiluncus mulieris 28-1] gi|304649732|gb|EFM47013.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Mobiluncus mulieris ATCC 35239] gi|307614895|gb|EFN94113.1| DNA gyrase, A subunit [Mobiluncus mulieris FB024-16] Length = 857 Score = 370 bits (950), Expect = e-100, Method: Compositional matrix adjust. Identities = 227/599 (37%), Positives = 337/599 (56%), Gaps = 35/599 (5%) Query: 11 TLVEEN-VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69 T E N V V L +++ YL YA+S I RA+PD+RDG KPVHRR+I+ M + G Sbjct: 20 TEAESNRVMQVDLEKEMKKSYLDYAMSVIVGRALPDVRDGLKPVHRRVIYTMYDGGYRPN 79 Query: 70 AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129 F K R+VG+V+G HPHGD SVYD+L RL QP+ RYPL++GQGNFG+ AA Sbjct: 80 GGFSKCMRVVGDVLGHFHPHGDASVYDALARLVQPWSMRYPLVAGQGNFGSPGNLGPAAP 139 Query: 130 RYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMAT 189 RYTE +M +A +++ ++ED VDF D Y+ + EP V PS+ PNLL NG GIAVGMAT Sbjct: 140 RYTECKMAALALEMVRDIEEDTVDFMDNYDGRNQEPTVLPSRVPNLLMNGAEGIAVGMAT 199 Query: 190 SIPSHNVQEICEAALALIDNPEISIEKLLEY----IIGPDFPTGGIIVESRESIVESYRL 245 IP HN++E+ +AA +++PE S E+LLE I GPDFPTG I+ R I ++YR Sbjct: 200 RIPPHNLREVADAAQWYLEHPEASREELLEAAMQRIKGPDFPTGATIL-GRRGIEDTYRT 258 Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305 GRG RA VEE+ G C+V TE+PYQV L+ KIA+L ++ + DIRDE+ Sbjct: 259 GRGSIVQRAVVNVEEL-HGRTCLVATELPYQVNPDNLLMKIAQLTKDGQLQGIADIRDET 317 Query: 306 AE--DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKE 363 ++ R+V+ K R P +++ +++ + ++ FP NM L G VP+ + LDG + Sbjct: 318 SDRAGTRLVVVLK-RDAVPKVVLNNLYKRTQLQDAFPANMLALVDG-VPRTLSLDGFIHY 375 Query: 364 WLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSR 420 W+ H+ V+ RR+ FR++ R+ IL+G L A +DE+IA+IR + + ++ Sbjct: 376 WVVHQVNVIRRRTEFRLRKAQERLHILQGYLAALDALDEVIALIRRSPTVEDARVGLMDL 435 Query: 421 FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIR 480 S+ E Q DAIL L+LR L LE +I E L A+ +L ++Q ++ E+ Sbjct: 436 LSVDEVQADAILALQLRRLAALERQKILDEHAELEAKVADFQDILAKPERQRAIVSTELA 495 Query: 481 EVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRS 532 E+ ++ R+T V A + +++ +I +E + V I+ G+ RS Sbjct: 496 EIANKWADE-----RKTAI--VPFAGEMSVED-LIPEEDMVVTITRGGFAKRTRVDAYRS 547 Query: 533 LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGH 586 + + +E D ++ + + D IL + G KAY +P G S H Sbjct: 548 QRRGGKGVKGAQLREDDQVEHFFTSSSHDWILFFTNFGRVYRAKAYEIPEGGRDSKGQH 606 >gi|152963979|ref|YP_001359763.1| DNA gyrase subunit A [Kineococcus radiotolerans SRS30216] gi|151358496|gb|ABS01499.1| DNA gyrase, A subunit [Kineococcus radiotolerans SRS30216] Length = 910 Score = 370 bits (950), Expect = e-100, Method: Compositional matrix adjust. Identities = 229/634 (36%), Positives = 352/634 (55%), Gaps = 43/634 (6%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 + V+ V L+ ++ YL YA+S I RA+PD+RDG KPVHRR+++AM + G + K Sbjct: 13 DRVEQVDLQAEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMYDGGYRPDRGYSK 72 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 AR+VG+V+G HPHGD S+YD+LVRLAQ + RYPL+ GQGNFG+ D AAA RYTE Sbjct: 73 CARVVGDVMGHYHPHGDTSIYDALVRLAQDWSLRYPLVDGQGNFGSPGNDPAAAPRYTEC 132 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 RM +A +++ +DE+ VDF Y+ EP V PS+FPNLL NG++GIAVGMAT+IP H Sbjct: 133 RMAPLAMEMVRDIDEETVDFSPNYDGHTDEPDVLPSRFPNLLVNGSAGIAVGMATNIPPH 192 Query: 195 NVQEICEAALALIDNPEISIEK----LLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250 N++E+ E A L+DNP+ S E+ LL I GPDFPTG +I+ R I ++YR GRG Sbjct: 193 NLREVAEGAKWLLDNPDASDEEQLAALLTRIKGPDFPTGALILGHR-GISDAYRTGRGSI 251 Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV- 309 +RA VEE+ +G C+VV+E+PYQV L E IA L+ R+ + D++D ++ Sbjct: 252 TMRAVVEVEEI-QGRTCLVVSELPYQVNPDNLAENIANLVRDGRLTGIADVQDHTSGKTG 310 Query: 310 -RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368 R+V+ + ++ +++ +++ + ++T F NM L G VP+ +P+ LK W+AH+ Sbjct: 311 QRLVIILRRDAV-AKVVLNNLYKHTQLQTNFGANMLALVDG-VPRTLPIHAFLKHWIAHQ 368 Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTE 425 +V+ RR+ FR++ + R IL+ LL A +DE+IA+IR + + ++ + E Sbjct: 369 LDVIVRRTRFRLRKAEERAHILRALLKALDALDEVIALIRASPTVESARDGLMGLLEIDE 428 Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485 Q AIL ++LR L LE +I E D L+ + +L ++Q + E+ E+ E Sbjct: 429 IQSRAILEMQLRRLAALERQRITDEYDELMRMIGDFNDILARPERQRQIVGDELAELVER 488 Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSH--------S 537 + G R T D + +I E + V ++ G+ + K+ Sbjct: 489 Y------GDERKTQILPFEGDMTV--EDLIPVEDVVVTVTRGGYAKRTKTDLYRAQRRGG 540 Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTD------GKAYTLPAGNLLSGR-GHGEAI 590 + +E D ++ TT LL T+ K Y LP G GR G G+ + Sbjct: 541 RGVRGASLREDDVVE-HFFTTTTHHWLLFFTNLGRVYRAKGYELPEG----GRDGRGQHV 595 Query: 591 QLLIDLNHNQDIVTAFVYDS--TCKLLVVSSKGN 622 L+ + IV + LV++++G Sbjct: 596 ANLLAFQPGERIVAVLDIEDYEQAPYLVLATRGG 629 >gi|315169780|gb|EFU13797.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX1342] Length = 823 Score = 370 bits (950), Expect = e-100, Method: Compositional matrix adjust. Identities = 211/618 (34%), Positives = 366/618 (59%), Gaps = 19/618 (3%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 + V+ ++L + +R+ Y+ I+ERA+PD+RDG KPV RRI+ +M++ G F F+K Sbjct: 8 QEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFSMNKDGNTFDKGFRK 67 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 SA+ VG ++G HPHGD S+Y+++VRL+Q + R LI GN G++DGD AA RYTEA Sbjct: 68 SAKSVGNIMGNYHPHGDSSIYEAMVRLSQDWKLREVLIEMHGNNGSMDGDPPAAMRYTEA 127 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 R++Q++ +L+ +D++ VDF +++ + EP V P+K+PNLL NG++GI+ G AT IP+H Sbjct: 128 RLSQLSGELLKDIDKNTVDFVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATEIPTH 187 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 N+ EI + + LID+P S+EKL+EYI GPDFPTGGI+ + + I ++Y GRG +RA Sbjct: 188 NLAEIIDGTVYLIDHPNASLEKLMEYIPGPDFPTGGIL-QGKAEIKKAYETGRGKVILRA 246 Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314 + +E + G IV++EIPY+V K+ L++K+ E+ + K++ + ++RDES ++ Sbjct: 247 KTKIEPLKGGKQQIVISEIPYEVNKATLVKKMDEIRLNKKVDGIAEVRDESDRTGLQIVV 306 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 + ++ + ++ +F ++++ + NM + PQ + L IL+ ++ HR+ V+ Sbjct: 307 ELKKDINAEGILNYLFKNTELQINYNFNMVAID-NMTPQQVGLKRILESYITHRKSVIIN 365 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDK--PKPVMVSRFSLTENQVDAI 431 R F + +R I+ GL+ A +D++IA IR ++DK K +VS ++ TE Q +AI Sbjct: 366 RCQFELDKARKREHIVAGLIKALSILDKVIATIRGSKDKKDAKKNLVSDYAFTEEQAEAI 425 Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491 + L+L L + ++ E L + ++ ++LN+ K+ ++ + E+REVK+ + Sbjct: 426 VTLQLYRLTNTDITDLQEEAKTLEQQIAELLNILNNEKELFSVMKKELREVKKQY----- 480 Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSVDL-SALHFKEG 548 G R T E + ++ +E + V +++ G+I+ S++S++ + KEG Sbjct: 481 -GNPRLTQIEEEIQEIKIETAVLVAQEDVVVTVTHEGYIKRSSIRSYTASKPEEIGMKEG 539 Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAI-QLLIDLNHNQDIVTA 605 D L A +T D +LL++ G P L L + GE I Q +++L ++ I+ Sbjct: 540 DFLLYAGEVNTLDHLLLVTNKGNMIYRPVHELPDLRWKEIGEHISQTILNLAIDESIIAV 599 Query: 606 FVYD--STCKLLVVSSKG 621 + Y S K V +K Sbjct: 600 YPYKELSPTKTFVFITKA 617 >gi|68535073|ref|YP_249778.1| DNA gyrase subunit A [Corynebacterium jeikeium K411] gi|260579571|ref|ZP_05847442.1| DNA gyrase subunit A [Corynebacterium jeikeium ATCC 43734] gi|68262672|emb|CAI36160.1| DNA gyrase subunit A [Corynebacterium jeikeium K411] gi|258602342|gb|EEW15648.1| DNA gyrase subunit A [Corynebacterium jeikeium ATCC 43734] Length = 837 Score = 370 bits (949), Expect = e-100, Method: Compositional matrix adjust. Identities = 235/702 (33%), Positives = 387/702 (55%), Gaps = 43/702 (6%) Query: 1 MGVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHA 60 M DN + N + V + L+ ++ Y+ YA+S I RA+P++RDG KPVHRRI++A Sbjct: 1 MSDDNNGSDNLF--DRVTPIDLQEEMKSSYIDYAMSVIVGRALPEVRDGLKPVHRRILYA 58 Query: 61 MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120 M + G ++ KSA+ V + +G HPHGD ++YD+LVRLAQP+ RYPL+ GQGNFG+ Sbjct: 59 MFDNGYRPERSYVKSAKPVADTMGNYHPHGDSAIYDTLVRLAQPWSMRYPLVDGQGNFGS 118 Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180 D AAA RYTE RMT +A +++ + E+ V+F+ Y+ + +EP V PS+ PNLL NG+ Sbjct: 119 RGNDGAAAMRYTECRMTPLAMEMVRDIRENTVEFQPNYDGKTTEPTVLPSRVPNLLMNGS 178 Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEI----SIEKLLEYIIGPDFPTGGIIVESR 236 GIAVGMAT+IP HN+ E+ EA L+DNP+ ++E +E + GPDFPT G+IV + Sbjct: 179 GGIAVGMATNIPPHNLNELAEAIYWLLDNPDAEEADALEACMERVKGPDFPTAGLIVGDK 238 Query: 237 ESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIP 296 I ++YR GRG R+R +EE G I++TE+PYQV L+ IAE I +I Sbjct: 239 -GIQDTYRTGRGSIRMRGVTSIEEEG-NRQVIIITELPYQVNPDNLVASIAEQIRDGKIA 296 Query: 297 LLEDIRDESAEDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQV 354 + I DES++ V RIV+ K R P +++ +++ S ++T F NM + G VP+ Sbjct: 297 GISKIDDESSDRVGMRIVITLK-RDAVPRVVLNNLYKHSQLQTSFGSNMLSIVDG-VPRT 354 Query: 355 MPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---D 411 + LD +L+ ++ H+ +V+ RR+ FR+ ++R IL+GL+ A +DE+IA+IR D Sbjct: 355 LRLDQMLRHYVDHQIDVIVRRTQFRLDEAEKRAHILRGLVKALDMLDEVIALIRRSPTVD 414 Query: 412 KPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQ 471 + + ++ + E Q D IL ++LR L +E +I EL L + ++L S ++Q Sbjct: 415 EARTGLIDLLDVDEVQADHILAMQLRRLAAMERQKIIDELAELEETIADLKAILESPQRQ 474 Query: 472 WNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR 531 + + E+ E+ + + RRT ++ A ++ +I +E + V I++ G+ + Sbjct: 475 RDIVRTELAEIVDKYGDE-----RRT---QIIAASGDVSEEDLIARENVVVTITSTGYAK 526 Query: 532 SLKSHSV--------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--L 581 K S + K+ D ++ T D IL + G+ Y L A L Sbjct: 527 RTKVDSYRSQRRGGKGVRGAELKQDDVVRHFFVCSTHDTILFFTNFGRVYRLRAFELPEA 586 Query: 582 SGRGHGEAIQLLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEII-ANTRK 637 + G+ + L++ + I Y+ L++ ++ G V++S + +T + Sbjct: 587 TRTARGQHVANLLEFQPGEQIAQVIQIQSYEDAPYLVLATAHGR---VKKSRLTDYDTAR 643 Query: 638 GKTFLKVSSEEKMKLV---VKVTGDHVAVVGENRKLLIFSID 676 + ++ E +LV + D + +V E + + F+ D Sbjct: 644 SGGLIAINLNEGDRLVGAQLCTAEDDLLLVSEEGQAMRFTAD 685 >gi|293382944|ref|ZP_06628862.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis R712] gi|293389567|ref|ZP_06634024.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis S613] gi|312907585|ref|ZP_07766576.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis DAPTO 512] gi|312910203|ref|ZP_07769050.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis DAPTO 516] gi|291079609|gb|EFE16973.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis R712] gi|291081184|gb|EFE18147.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis S613] gi|310626613|gb|EFQ09896.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis DAPTO 512] gi|311289476|gb|EFQ68032.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis DAPTO 516] Length = 823 Score = 370 bits (949), Expect = e-100, Method: Compositional matrix adjust. Identities = 212/618 (34%), Positives = 366/618 (59%), Gaps = 19/618 (3%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 + V+ ++L + +R+ Y+ I+ERA+PD+RDG KPV RRI+ +M++ G F F+K Sbjct: 8 QEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFSMNKDGNTFDKGFRK 67 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 SA+ VG ++G HPHGD S+YD++VRL+Q + R LI GN G++DGD AA RYTEA Sbjct: 68 SAKSVGNIMGNYHPHGDISIYDAMVRLSQDWKLREVLIEMHGNNGSMDGDPPAAMRYTEA 127 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 R++Q++ +L+ +D++ VDF +++ + EP V P+K+PNLL NG++GI+ G AT IP+H Sbjct: 128 RLSQLSGELLKDIDKNTVDFVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATEIPTH 187 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 N+ EI + + LID+P S+EKL+EYI GPDFPTGGI+ + + I ++Y GRG +RA Sbjct: 188 NLAEIIDGTVYLIDHPNASLEKLMEYIPGPDFPTGGIL-QGKAEIKKAYETGRGKVILRA 246 Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314 + +E + G IV++EIPY+V K+ L++K+ E+ + K++ + ++RDES ++ Sbjct: 247 KTKIEPLKGGKQQIVISEIPYEVNKATLVKKMDEIRLNKKVDGIAEVRDESDRTGLQIVV 306 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 + ++ + ++ +F ++++ + NM + PQ + L IL+ ++ HR+ V+ Sbjct: 307 ELKKDVNAEGILNYLFKNTELQINYNFNMVAID-NMTPQQVGLKRILESYITHRKSVIIN 365 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDK--PKPVMVSRFSLTENQVDAI 431 R F + +R I+ GL+ A +D++IA IR ++DK K +VS ++ TE Q +AI Sbjct: 366 RCQFELDKARKREHIVAGLIKALSILDKVIATIRGSKDKKDAKKNLVSDYAFTEEQAEAI 425 Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491 + L+L L + ++ E L + ++ ++LN+ K+ ++ + E+REVK+ + Sbjct: 426 VTLQLYRLTNTDITDLQEEAKTLEQQIAELLNILNNEKELFSVMKKELREVKKQY----- 480 Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSVDL-SALHFKEG 548 G R T E + ++ +E + V +++ G+I+ S++S++ + KEG Sbjct: 481 -GNPRLTQIEEEIQEIKIETAVLVAQEDVVVTVTHEGYIKRSSIRSYTASKPEEIGMKEG 539 Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAI-QLLIDLNHNQDIVTA 605 D L A +T D +LL++ G P L L + GE I Q +++L ++ I+ Sbjct: 540 DFLLYAGEVNTLDHLLLVTNKGNMIYRPVHELPDLRWKEIGEHISQTILNLAIDESIIAV 599 Query: 606 FVYD--STCKLLVVSSKG 621 + Y S K V +K Sbjct: 600 YPYKELSPTKTFVFITKA 617 >gi|328905794|gb|EGG25570.1| DNA gyrase, A subunit [Propionibacterium sp. P08] Length = 891 Score = 370 bits (949), Expect = e-100, Method: Compositional matrix adjust. Identities = 242/702 (34%), Positives = 385/702 (54%), Gaps = 55/702 (7%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 ++ V +R ++ YL YA+S I RA+PD+RDG KPVHRR+I+AM + G + K + Sbjct: 26 IQPVEIRDEIQNAYLDYAMSVIVGRALPDVRDGLKPVHRRVIYAMYDGGYRPDRGWNKCS 85 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+V+GK HPHGD ++YD+LVRLAQP+ RY L+ GQGNFG+ D AAA RYTE +M Sbjct: 86 RVVGDVMGKYHPHGDSAIYDTLVRLAQPWAMRYKLVQGQGNFGSQGNDGAAAMRYTECKM 145 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 +A +++ +D+D VDF+ Y+ +++EPVV PS+FPNLL NG+SGIAVGMAT+IP+HN+ Sbjct: 146 APLAMEMVRDIDQDTVDFQPNYDNKETEPVVLPSRFPNLLVNGSSGIAVGMATNIPTHNL 205 Query: 197 QEICEAALALIDNPEISIEKLLEY----IIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252 +E+ A + +P+ S E+LLE I GPDFP G +IV R+ I ++YR GRG + Sbjct: 206 REVNRAVQWSLAHPDASSEELLEACMERIKGPDFPGGALIV-GRQGIEDAYRTGRGSVTM 264 Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV--R 310 RA +EE +G C+VVTE+PY L KIAEL+ + RI + DIRD+S+ R Sbjct: 265 RAVIDMEEDKKGRQCLVVTELPYMCNPDNLATKIAELVNSGRINGIADIRDDSSARTGQR 324 Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370 +V+ K R P ++M +++ + ++ F NM L + VP+ + LD + W+ H+ E Sbjct: 325 LVIVLK-RDAQPRVVMNNLYKHTALQDTFGCNMLAL-VDNVPRTLRLDQFISYWIDHQME 382 Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQ 427 V+ RR+ +R+ ++ I + L+ A +DE+IA+IR N + + + E Q Sbjct: 383 VIRRRTEYRLAQAEKDAHIQRALVKALDMLDEVIALIRRSPNTEAASTGLQELLDIDEIQ 442 Query: 428 VDAILNLRLRSLRKLEEYQI---KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484 AIL+++LR L LE +I EL+ L+A+ + I L S +Q I+ E+ E+ + Sbjct: 443 ARAILDMQLRRLAALERQKIIDRLEELERLIADYKAI---LASDDRQREIISTELAEIVD 499 Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH 544 + RRT AD ++ I + + V I+ G+ + ++ DL + Sbjct: 500 KYGDE-----RRTRIIA---ADGDFSEEDFIPDDDVVVTITRGGYAKRTRT---DLYRVQ 548 Query: 545 FKEGDSLK---------IALHAHTTDR--ILLLSTDGKAY-----TLPAGNLLSGRGHGE 588 + G ++ +A TT+ IL + G+ Y LP + GH Sbjct: 549 KRGGKGVRGASLRADDEVAQLFTTTNHQWILFFTNMGRVYRTKVWQLPEAGRDAKGGHVA 608 Query: 589 AIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIA--NTRKGKTF---LK 643 + + ++T Y+ LL+ + KG +V+++ + A ++R+ + Sbjct: 609 GLLSFLPDEKIAQVMTLRSYEDAEYLLLATRKG---MVKKTALKAYDSSRQAGVIAINFR 665 Query: 644 VSSEEKMKLVVKVTGDHVAVVGENRKLLIFSI--DQIPEMSR 683 EE + GD V ++ + + FS DQ+ M R Sbjct: 666 TEDEELIGAEQCSAGDDVLLISRKGQAIRFSAGDDQLRSMGR 707 >gi|118462773|ref|YP_879309.1| DNA gyrase subunit A [Mycobacterium avium 104] gi|118164060|gb|ABK64957.1| DNA gyrase, A subunit [Mycobacterium avium 104] Length = 839 Score = 370 bits (949), Expect = e-100, Method: Compositional matrix adjust. Identities = 217/584 (37%), Positives = 337/584 (57%), Gaps = 33/584 (5%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 + V+ V ++ ++ Y+ YA+S I RA+P++RDG KPVHRR+++AM + G + K Sbjct: 14 DRVEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAMYDSGFRPDRSHAK 73 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 SAR V E +G HPHGD S+YD+LVR+AQP+ RYPL+ GQGNFG+ D AA RYTEA Sbjct: 74 SARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSPGNDPPAAMRYTEA 133 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 R+T +A +L+ +DE+ VDF Y+ EP V PS+FPNLLANG+ GIAVGMAT+IP H Sbjct: 134 RLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSGGIAVGMATNIPPH 193 Query: 195 NVQEICEAALALIDN----PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250 N+ E+ EA +DN E ++ ++E + GPDFPT G+IV + + I ++Y+ GRG Sbjct: 194 NLGELAEAVFWALDNYEADEEATLAAVMERVKGPDFPTSGLIVGT-QGIADAYKTGRGSI 252 Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV- 309 R+R VEE RG +V+TE+PYQV I IAE + ++ + +I D+S++ V Sbjct: 253 RMRGVVEVEEDSRGRTSLVITELPYQVNHDNFITSIAEQVRDGKLAGISNIEDQSSDRVG 312 Query: 310 -RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368 RIV+ K R +++ +++ + ++T F NM + G VP+ + LD +++ ++ H+ Sbjct: 313 LRIVIELK-RDAVAKVVLNNLYKHTQLQTSFGANMLAIVDG-VPRTLRLDQLIRHYVDHQ 370 Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTE 425 +V+ RR+++R++ + R IL+GL+ A +DE+IA+IR D + ++ + E Sbjct: 371 LDVIVRRTTYRLRKANERAHILRGLVKALDALDEVIALIRASETVDIARQGLIELLDIDE 430 Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485 Q AIL+++LR L LE +I +L + AE ++ +L ++Q + E+ EI Sbjct: 431 IQAQAILDMQLRRLAALERQRIIDDLAKIEAEIADLEDILAKPERQRGIVRDEL---AEI 487 Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHS 537 K D R R + AD + +I +E + V I+ G+ RS K Sbjct: 488 VEKHGDARRTR-----IVAADGDVSDEDLIAREDVVVTITETGYAKRTKTDLYRSQKRGG 542 Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLP 576 + K+ D ++ T D IL +T G KAY LP Sbjct: 543 KGVQGAGLKQDDIVRHFFVCSTHDWILFFTTQGRVYRAKAYELP 586 >gi|229545772|ref|ZP_04434497.1| DNA topoisomerase (ATP-hydrolyzing) [Enterococcus faecalis TX1322] gi|307270969|ref|ZP_07552252.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX4248] gi|307274909|ref|ZP_07556072.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX2134] gi|307278017|ref|ZP_07559101.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX0860] gi|307289155|ref|ZP_07569111.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX0109] gi|307291947|ref|ZP_07571816.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX0411] gi|312899464|ref|ZP_07758794.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX0470] gi|312903357|ref|ZP_07762537.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX0635] gi|312951547|ref|ZP_07770443.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX0102] gi|15982571|dbj|BAB69481.1| topoisomerase IV A subunit [Enterococcus faecalis] gi|229309084|gb|EEN75071.1| DNA topoisomerase (ATP-hydrolyzing) [Enterococcus faecalis TX1322] gi|306496945|gb|EFM66493.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX0411] gi|306499864|gb|EFM69225.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX0109] gi|306505414|gb|EFM74600.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX0860] gi|306508357|gb|EFM77464.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX2134] gi|306512467|gb|EFM81116.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX4248] gi|310630513|gb|EFQ13796.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX0102] gi|310633233|gb|EFQ16516.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX0635] gi|311293334|gb|EFQ71890.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX0470] gi|315027217|gb|EFT39149.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX2137] gi|315029335|gb|EFT41267.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX4000] gi|315034018|gb|EFT45950.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX0017] gi|315037027|gb|EFT48959.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX0027] gi|315147314|gb|EFT91330.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX4244] gi|315152430|gb|EFT96446.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX0031] gi|315164064|gb|EFU08081.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX1302] gi|315168986|gb|EFU13003.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX1341] gi|315172255|gb|EFU16272.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX1346] gi|315575817|gb|EFU88008.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX0309B] gi|315577657|gb|EFU89848.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX0630] gi|315580469|gb|EFU92660.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX0309A] gi|327535183|gb|AEA94017.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Enterococcus faecalis OG1RF] Length = 823 Score = 370 bits (949), Expect = e-100, Method: Compositional matrix adjust. Identities = 211/618 (34%), Positives = 366/618 (59%), Gaps = 19/618 (3%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 + V+ ++L + +R+ Y+ I+ERA+PD+RDG KPV RRI+ +M++ G F F+K Sbjct: 8 QEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFSMNKDGNTFDKGFRK 67 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 SA+ VG ++G HPHGD S+Y+++VRL+Q + R LI GN G++DGD AA RYTEA Sbjct: 68 SAKSVGNIMGNYHPHGDSSIYEAMVRLSQDWKLREVLIEMHGNNGSMDGDPPAAMRYTEA 127 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 R++Q++ +L+ +D++ VDF +++ + EP V P+K+PNLL NG++GI+ G AT IP+H Sbjct: 128 RLSQLSGELLKDIDKNTVDFVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATEIPTH 187 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 N+ EI + + LID+P S+EKL+EYI GPDFPTGGI+ + + I ++Y GRG +RA Sbjct: 188 NLAEIIDGTVYLIDHPNASLEKLMEYIPGPDFPTGGIL-QGKAEIKKAYETGRGKVILRA 246 Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314 + +E + G IV++EIPY+V K+ L++K+ E+ + K++ + ++RDES ++ Sbjct: 247 KTKIEPLKGGKQQIVISEIPYEVNKATLVKKMDEIRLNKKVDGIAEVRDESDRTGLQIVV 306 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 + ++ + ++ +F ++++ + NM + PQ + L IL+ ++ HR+ V+ Sbjct: 307 ELKKDVNAEGILNYLFKNTELQINYNFNMVAID-NMTPQQVGLKRILESYITHRKSVIIN 365 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDK--PKPVMVSRFSLTENQVDAI 431 R F + +R I+ GL+ A +D++IA IR ++DK K +VS ++ TE Q +AI Sbjct: 366 RCQFELDKARKREHIVAGLIKALSILDKVIATIRGSKDKKDAKKNLVSDYAFTEEQAEAI 425 Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491 + L+L L + ++ E L + ++ ++LN+ K+ ++ + E+REVK+ + Sbjct: 426 VTLQLYRLTNTDITDLQEEAKTLEQQIAELLNILNNEKELFSVMKKELREVKKQY----- 480 Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSVDL-SALHFKEG 548 G R T E + ++ +E + V +++ G+I+ S++S++ + KEG Sbjct: 481 -GNPRLTQIEEEIQEIKIETAVLVAQEDVVVTVTHEGYIKRSSIRSYTASKPEEIGMKEG 539 Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAI-QLLIDLNHNQDIVTA 605 D L A +T D +LL++ G P L L + GE I Q +++L ++ I+ Sbjct: 540 DFLLYAGEVNTLDHLLLVTNKGNMIYRPVHELPDLRWKEIGEHISQTILNLAIDESIIAV 599 Query: 606 FVYD--STCKLLVVSSKG 621 + Y S K V +K Sbjct: 600 YPYKELSPTKTFVFITKA 617 >gi|256762549|ref|ZP_05503129.1| DNA topoisomerase IV subunit A [Enterococcus faecalis T3] gi|256683800|gb|EEU23495.1| DNA topoisomerase IV subunit A [Enterococcus faecalis T3] Length = 820 Score = 370 bits (949), Expect = e-100, Method: Compositional matrix adjust. Identities = 211/618 (34%), Positives = 366/618 (59%), Gaps = 19/618 (3%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 + V+ ++L + +R+ Y+ I+ERA+PD+RDG KPV RRI+ +M++ G F F+K Sbjct: 5 QEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFSMNKDGNTFDKGFRK 64 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 SA+ VG ++G HPHGD S+Y+++VRL+Q + R LI GN G++DGD AA RYTEA Sbjct: 65 SAKSVGNIMGNYHPHGDSSIYEAMVRLSQDWKLREVLIEMHGNNGSMDGDPPAAMRYTEA 124 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 R++Q++ +L+ +D++ VDF +++ + EP V P+K+PNLL NG++GI+ G AT IP+H Sbjct: 125 RLSQLSGELLKDIDKNTVDFVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATEIPTH 184 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 N+ EI + + LID+P S+EKL+EYI GPDFPTGGI+ + + I ++Y GRG +RA Sbjct: 185 NLAEIIDGTVYLIDHPNASLEKLMEYIPGPDFPTGGIL-QGKAEIKKAYETGRGKVILRA 243 Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314 + +E + G IV++EIPY+V K+ L++K+ E+ + K++ + ++RDES ++ Sbjct: 244 KTKIEPLKGGKQQIVISEIPYEVNKATLVKKMDEIRLNKKVDGIAEVRDESDRTGLQIVV 303 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 + ++ + ++ +F ++++ + NM + PQ + L IL+ ++ HR+ V+ Sbjct: 304 ELKKDINAEGILNYLFKNTELQINYNFNMVAID-NMTPQQVGLKRILESYITHRKSVIIN 362 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDK--PKPVMVSRFSLTENQVDAI 431 R F + +R I+ GL+ A +D++IA IR ++DK K +VS ++ TE Q +AI Sbjct: 363 RCQFELDKARKREHIVAGLIKALSILDKVIATIRGSKDKKDAKKNLVSDYAFTEEQAEAI 422 Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491 + L+L L + ++ E L + ++ ++LN+ K+ ++ + E+REVK+ + Sbjct: 423 VTLQLYRLTNTDITDLQEEAKTLEQQIAELLNILNNEKELFSVMKKELREVKKQY----- 477 Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSVDL-SALHFKEG 548 G R T E + ++ +E + V +++ G+I+ S++S++ + KEG Sbjct: 478 -GNPRLTQIEEEIQEIKIETAVLVAQEDVVVTVTHEGYIKRSSIRSYTASKPEEIGMKEG 536 Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAI-QLLIDLNHNQDIVTA 605 D L A +T D +LL++ G P L L + GE I Q +++L ++ I+ Sbjct: 537 DFLLYAGEVNTLDHLLLVTNKGNMIYRPVHELPDLRWKEIGEHISQTILNLAIDESIIAV 596 Query: 606 FVYD--STCKLLVVSSKG 621 + Y S K V +K Sbjct: 597 YPYKELSPTKTFVFITKA 614 >gi|319947112|ref|ZP_08021346.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus australis ATCC 700641] gi|319747160|gb|EFV99419.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus australis ATCC 700641] Length = 817 Score = 370 bits (949), Expect = e-100, Method: Compositional matrix adjust. Identities = 217/696 (31%), Positives = 392/696 (56%), Gaps = 24/696 (3%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 N++ +SL + ER+ Y+ I+ERA+PD+RDG KPV RRI+++M++ G ++KS Sbjct: 3 NIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTHDKGYRKS 62 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 A+ VG ++G HPHGD S+YD++VR++Q + R L+ GN G++DGD AA RYTEAR Sbjct: 63 AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 ++++A +LQ ++++ V F +++ + EP V P+ FPNLL NG +GI+ G AT IP HN Sbjct: 123 LSEIAGYLLQDIEKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPHN 182 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 + E+ +A + +ID+P ++KL+E++ GPDFPTG II + R+ I ++Y G+G VR++ Sbjct: 183 LAEVIDAVVYMIDHPSAKVDKLMEFLPGPDFPTGAII-QGRDEIKKAYETGKGRVVVRSK 241 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315 +E++ G IVVTEIPY++ K+ L++KI ++ + ++ + ++RDES D + Sbjct: 242 TEIEQLKGGKQQIVVTEIPYEINKAVLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 301 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 + + DL++ +F +D++ + NM + P+ + + IL ++AHRR+++ R Sbjct: 302 LKKDANADLILNYLFKYTDLQVNYNFNMVAID-NYTPRQVGIVPILSSYIAHRRDIIVAR 360 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432 S F + +RR+ I++GL+ +DE+IA+IR N+ K + + TE Q +AI+ Sbjct: 361 SRFDKEKAERRLHIVEGLIRVISILDEVIALIRASDNKADAKENLKISYDFTEEQAEAIV 420 Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492 L+L L + ++ E NL + + +++ + +N + E+REVK++F Sbjct: 421 TLQLYRLTNTDIVTLEEEHANLKEQIATLAAIIGDERTMFNLMKKELREVKKLFGNP--- 477 Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FKEGD 549 RR+ + ++ + ++E+E V ++ G+I+ S + S + ++ D Sbjct: 478 --RRSELQDTAKTIEIDTASLIVEEETF-VSVTRAGYIKRTSPRSFNASTVEEVGKRDDD 534 Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIVTAF 606 L A TT +LL + G A P L + GE + Q L + ++I+ A Sbjct: 535 ELIFVEPAKTTQHLLLFTNLGNAIYRPVHELADTKWKDIGEHLSQTLTNFEQEEEILFAE 594 Query: 607 VYDS--TCKLLVVSSKGNAFIVEESEIIA-NTRKGKT--FLKVSSEE-KMKLVVKVTGDH 660 + D + +G E E+ T + K+ + K+ +E ++ V V + Sbjct: 595 IVDQFEGVTYFAATQQGQIKRFERKELSPWRTYRSKSTKYAKLKDQEDRIIAVAPVVLED 654 Query: 661 VAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDG 695 + ++ +N L F+I+++P + ++ GV+ + KDG Sbjct: 655 IMIITKNGYGLRFNIEEVPVVGAKAAGVKAINLKDG 690 >gi|302346561|ref|YP_003814859.1| DNA gyrase, A subunit [Prevotella melaninogenica ATCC 25845] gi|302150295|gb|ADK96556.1| DNA gyrase, A subunit [Prevotella melaninogenica ATCC 25845] Length = 859 Score = 370 bits (949), Expect = e-100, Method: Compositional matrix adjust. Identities = 216/616 (35%), Positives = 349/616 (56%), Gaps = 27/616 (4%) Query: 6 ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65 + + T+ ++ + +++ ++ Y+ Y++S I RA+PD+RDGFKPVHRRI+ M +G Sbjct: 1 MDENQTIDQDRIMKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILFGMRGIG 60 Query: 66 LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125 +KK AR+VGEV+GK HPHGD SVY +LVR+ Q + RY L+ GQGNFG++DGDS Sbjct: 61 NFSNQPYKKCARVVGEVLGKYHPHGDSSVYGALVRMGQDWNMRYKLVDGQGNFGSVDGDS 120 Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185 AAA RYTE R++++ E ++ +++D VD + +++ EP V P+K PNLL NG +GIAV Sbjct: 121 AAAMRYTECRLSKMGEHVMDDIEKDTVDMVNNFDDTLREPAVMPTKIPNLLVNGGNGIAV 180 Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245 GMAT+IP+HN+ E+ + A IDNPEIS + L+E+I PDFPTG I + + ++Y Sbjct: 181 GMATNIPTHNLGEVIDGCCAYIDNPEISTDGLMEFIPAPDFPTGAYIY-GLQGVKDAYET 239 Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305 GRG +RA+ +E IVVTEIPY V K +LIE IA+L+ ++ + ++ DE+ Sbjct: 240 GRGRVVMRAKAEIES-DENHDKIVVTEIPYGVNKQQLIEYIADLVKEGKLEGISNVNDET 298 Query: 306 A-EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364 + +RIV+ K R + ++++ +F ++ +++ F +N L GR P+++ L +K + Sbjct: 299 GRQGMRIVVDVK-RDANANVILNKLFKMTALQSSFSVNCIALVAGR-PRLLSLRECIKYF 356 Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRF 421 + HR +V RR+ F ++ R IL+ L+ A NIDE++ IIR P + RF Sbjct: 357 VEHRHDVTIRRAQFDLKKAQERAHILEALIKACDNIDEVVRIIRASKTPSDAQRNLEKRF 416 Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481 E Q AI+++RL L L Q+ E + L+ + + +LN+ ++ + E++E Sbjct: 417 EFDELQSRAIVDMRLSQLTGLRLDQLHQEFEELMQTIKDLQEILNNPERCKEVMKEELQE 476 Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR-----SLKSH 536 VKE + RRT E+ + + +P+ + IS+ G+I+ K Sbjct: 477 VKEKYGDV-----RRT---EIIPDEHEFNAEDFYPNDPVVITISHLGYIKRTPLADFKEQ 528 Query: 537 S---VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQ 591 + V +E D + A +L + G+ Y + ++ G G AIQ Sbjct: 529 ARGGVGSKGARTREKDFTEYIYPATMHQTMLFFTRKGRCYWMKCYDIPEGDKNSKGRAIQ 588 Query: 592 LLIDLNHNQDIVTAFV 607 ++ L D V AF+ Sbjct: 589 NMLSLEPG-DSVNAFL 603 >gi|314963863|gb|EFT07963.1| DNA gyrase, A subunit [Propionibacterium acnes HL082PA1] Length = 902 Score = 370 bits (949), Expect = e-100, Method: Compositional matrix adjust. Identities = 229/633 (36%), Positives = 356/633 (56%), Gaps = 45/633 (7%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 ++ V +R ++ YL YA+S I RA+PD+RDG KPVHRR+I+AM + G + K + Sbjct: 26 IQPVEIRDEIQNAYLDYAMSVIVGRALPDVRDGLKPVHRRVIYAMYDGGYRPDRGWNKCS 85 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+V+GK HPHGD ++YD+LVRLAQP+ RY L+ GQGNFG+ D AAA RYTE +M Sbjct: 86 RVVGDVMGKYHPHGDSAIYDTLVRLAQPWAMRYKLVQGQGNFGSQGNDGAAAMRYTECKM 145 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 +A +++ +D+D VDF+ Y+ +++EPVV PS+FPNLL NG+SGIAVGMAT+IP+HN+ Sbjct: 146 APLAMEMVRDIDQDTVDFQPNYDNKETEPVVLPSRFPNLLVNGSSGIAVGMATNIPTHNL 205 Query: 197 QEICEAALALIDNPEISIEKLLEY----IIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252 +E+ EA + +P S E+LLE I GPDFP G +IV R+ I ++YR GRG + Sbjct: 206 REVNEAVQWSLAHPNASHEELLEACMERIKGPDFPGGALIV-GRQGIEDAYRTGRGSVTM 264 Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV--R 310 RA +EE +G C+VVTE+PY L KIA+L+ + RI + DIRD+S+ R Sbjct: 265 RAVIDMEEDKKGRQCLVVTELPYMCNPDNLATKIADLVNSGRINGIADIRDDSSARTGQR 324 Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370 +V+ K R P ++M +++ + ++ F NM L + VP+ + LD + W+ H+ E Sbjct: 325 LVIVLK-RDAQPRVVMNNLYKHTALQDTFGCNMLAL-VDNVPRTLRLDQFISYWIDHQME 382 Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQ 427 V+ RR+ +R+ ++ I + L+ A +DE+IA+IR N + + + E Q Sbjct: 383 VIRRRTEYRLAQAEKDAHIQRALVKALDMLDEVIALIRRSPNTEAASTGLQELLDIDEIQ 442 Query: 428 VDAILNLRLRSLRKLEEYQI---KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484 AIL+++LR L LE +I EL+ L+A+ + I L S +Q I+ E+ E+ + Sbjct: 443 ARAILDMQLRRLAALERQKIIDRLEELERLIADYKAI---LASEDRQREIISTELAEIVD 499 Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH 544 + RRT AD ++ I + + V I+ G+ + ++ DL + Sbjct: 500 KYGDE-----RRTRIIA---ADGDFSEEDFIPDDDVVVTITRGGYAKRTRT---DLYRVQ 548 Query: 545 FKEGDSLK---------IALHAHTTDR--ILLLSTDGKAY-----TLPAGNLLSGRGHGE 588 + G ++ +A TT+ IL + G+ Y LP + GH Sbjct: 549 KRGGKGVRGASLRADDEVAQLFTTTNHQWILFFTNMGRVYRTKVWQLPEAGREARGGHVA 608 Query: 589 AIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKG 621 + + ++T YD LL+ + KG Sbjct: 609 GLLSFLPDEKIAQVMTLRSYDGAEYLLLATRKG 641 >gi|241760567|ref|ZP_04758660.1| DNA gyrase, A subunit [Neisseria flavescens SK114] gi|241319071|gb|EER55573.1| DNA gyrase, A subunit [Neisseria flavescens SK114] Length = 923 Score = 370 bits (949), Expect = e-100, Method: Compositional matrix adjust. Identities = 227/628 (36%), Positives = 352/628 (56%), Gaps = 65/628 (10%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 VSL + + YL YA+S I RA+PD+RDG KPVHRR+++AM E+ ++ +A+KKSARIV Sbjct: 19 VSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELKNNWNSAYKKSARIV 78 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGD +VYD++VR+AQ F RY LI GQGNFG++DG +AAA RYTE RM ++ Sbjct: 79 GDVIGKYHPHGDIAVYDTIVRMAQDFSMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMEKI 138 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 + +L ++E+ V+F Y+ + EP+V P++FP LL NG+SGIAVGMAT+IP HN+ + Sbjct: 139 SHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPALLVNGSSGIAVGMATNIPPHNLGDT 198 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 A L L+D PE I++L+ I PDFPTG I + E Y+ GRG +R + +E Sbjct: 199 INACLRLLDEPETEIDELINIIQAPDFPTGATIY-GLSGVREGYKTGRGRVVMRGKTHIE 257 Query: 260 EVGRGS--WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317 +G+ IV+ EIPYQV K++L+EKI EL+ K + + D+RDES + V+ Sbjct: 258 PIGKNGEREAIVIDEIPYQVNKAKLVEKIGELVREKTLEGVSDLRDESDKSGMRVVIELK 317 Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377 R+ + ++++ ++ L+ ++ F +NM L G+ P+++ L IL E+L HRREV+ RR+ Sbjct: 318 RNENAEVVLNQLYKLTQLQDSFGINMVALVDGQ-PRLLNLKQILSEFLRHRREVVTRRTL 376 Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSR-------------- 420 FR++ I +G +A NIDEII +I+ N + K ++SR Sbjct: 377 FRLKKARHEGHIAEGKAVALSNIDEIIRLIKESANAPEAKEKLLSRPWRSSLVEDMLSRT 436 Query: 421 ----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458 + L+E Q DAIL + LR+L L++ +I E NL+++ Sbjct: 437 DLDLHMMRPEGLPENLGLHSQGYYLSELQADAILRMSLRNLTGLDQEEIVGEYKNLMSKI 496 Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518 +L+ ++ I E+ ++K F RR+ E++ + +I + Sbjct: 497 IDFVDILSKPERVTQIIREELADIKANFGDE-----RRS---EINPFGGDIADEDLIPQR 548 Query: 519 PITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570 + V +++ G+I+ + + A K+ D ++ A+T D ++ + G Sbjct: 549 EMVVTLTHGGYIKIQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDYLMCFTNLG 608 Query: 571 KA-----YTLPAGNLLS-GRGHGEAIQL 592 K Y LP G S GR IQL Sbjct: 609 KCHWIKVYKLPEGGRNSRGRPINNVIQL 636 >gi|323480779|gb|ADX80218.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis 62] Length = 820 Score = 370 bits (949), Expect = e-100, Method: Compositional matrix adjust. Identities = 211/618 (34%), Positives = 366/618 (59%), Gaps = 19/618 (3%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 + V+ ++L + +R+ Y+ I+ERA+PD+RDG KPV RRI+ +M++ G F F+K Sbjct: 5 QEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFSMNKDGNTFDKGFRK 64 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 SA+ VG ++G HPHGD S+Y+++VRL+Q + R LI GN G++DGD AA RYTEA Sbjct: 65 SAKSVGNIMGNYHPHGDSSIYEAMVRLSQDWKLREVLIEMHGNNGSMDGDPPAAMRYTEA 124 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 R++Q++ +L+ +D++ VDF +++ + EP V P+K+PNLL NG++GI+ G AT IP+H Sbjct: 125 RLSQLSGELLKDIDKNTVDFVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATEIPTH 184 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 N+ EI + + LID+P S+EKL+EYI GPDFPTGGI+ + + I ++Y GRG +RA Sbjct: 185 NLAEIIDGTVYLIDHPNASLEKLMEYIPGPDFPTGGIL-QGKAEIKKAYETGRGKVILRA 243 Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314 + +E + G IV++EIPY+V K+ L++K+ E+ + K++ + ++RDES ++ Sbjct: 244 KTKIEPLKGGKQQIVISEIPYEVNKATLVKKMDEIRLNKKVDGIAEVRDESDRTGLQIVV 303 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 + ++ + ++ +F ++++ + NM + PQ + L IL+ ++ HR+ V+ Sbjct: 304 ELKKDVNAEGILNYLFKNTELQINYNFNMVAID-NMTPQQVGLKRILESYITHRKSVIIN 362 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDK--PKPVMVSRFSLTENQVDAI 431 R F + +R I+ GL+ A +D++IA IR ++DK K +VS ++ TE Q +AI Sbjct: 363 RCQFELDKARKREHIVAGLIKALSILDKVIATIRGSKDKKDAKKNLVSDYAFTEEQAEAI 422 Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491 + L+L L + ++ E L + ++ ++LN+ K+ ++ + E+REVK+ + Sbjct: 423 VTLQLYRLTNTDITDLQEEAKTLEQQIAELLNILNNEKELFSVMKKELREVKKQY----- 477 Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSVDL-SALHFKEG 548 G R T E + ++ +E + V +++ G+I+ S++S++ + KEG Sbjct: 478 -GNPRLTQIEEEIQEIKIETAVLVAQEDVVVTVTHEGYIKRSSIRSYTASKPEEIGMKEG 536 Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAI-QLLIDLNHNQDIVTA 605 D L A +T D +LL++ G P L L + GE I Q +++L ++ I+ Sbjct: 537 DFLLYAGEVNTLDHLLLVTNKGNMIYRPVHELPDLRWKEIGEHISQTILNLAIDESIIAV 596 Query: 606 FVYD--STCKLLVVSSKG 621 + Y S K V +K Sbjct: 597 YPYKELSPTKTFVFITKA 614 >gi|83319790|ref|YP_424430.1| DNA topoisomerase IV, A subunit [Mycoplasma capricolum subsp. capricolum ATCC 27343] gi|83283676|gb|ABC01608.1| DNA topoisomerase IV, A subunit [Mycoplasma capricolum subsp. capricolum ATCC 27343] Length = 899 Score = 370 bits (949), Expect = e-100, Method: Compositional matrix adjust. Identities = 238/743 (32%), Positives = 422/743 (56%), Gaps = 41/743 (5%) Query: 24 FALEE----RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 + LEE R+ YA I+ERA+PD+RDG KPV RRI++AM+++ L F +KKSAR+V Sbjct: 10 YPLEELLGNRFSRYAKYIIQERALPDVRDGLKPVQRRILYAMNQLNLTFDKPYKKSARVV 69 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 GEVIGK HPHGD S+YD++VR++Q + PL+ QGN G+IDGDSAAA RYTEAR+T++ Sbjct: 70 GEVIGKYHPHGDSSIYDAMVRMSQWWKVNIPLVDMQGNNGSIDGDSAAAMRYTEARLTKI 129 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 + L+L+ +++D V F +++ ++EP V PS FPN+L NG +GIA G AT++P HN+ EI Sbjct: 130 SNLLLEDLEKDTVIFSPNFDDSETEPTVLPSYFPNILVNGATGIAAGYATNMPPHNLSEI 189 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 +A + +I NP I+I+++L+ + GPDFPTG II ++++ I E++ G+G + ++W E Sbjct: 190 IDATIDIIKNPNITIDQILKIVKGPDFPTGAII-QNKQGIREAFLTGKGKVIISSKWHQE 248 Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319 + IV+ EIPY+V K L++KI ++I +++IRDE+ ++ N Sbjct: 249 KNN-----IVIDEIPYEVVKQDLVKKIGDVIDNNPNLGIKEIRDETDRKGLRIVIELNEK 303 Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379 + + + + +F + + + N N++ + + P+ + L I+K +++H +EV +R+ F Sbjct: 304 ANLETVRKFLFKSTWLSVSYNYN-NIIIVDKQPKQLGLIDIIKAYISHYKEVFIKRTEFN 362 Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDKPKPV--MVSRFSLTENQVDAILNLRL 436 + + R+EI+KGL+ A +DE+I +IR +E++ + +V F+ T NQ AI+++RL Sbjct: 363 LNKTNLRLEIVKGLIKALSILDEVIKVIRKSENRIDAINNLVISFNFTTNQSTAIVDMRL 422 Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496 L + ++ E L+ + +K +LN N+I + EVK+ F G +R Sbjct: 423 YRLTSTDVNKLLLEKTELIDKIKKYQEILNDNLVLDNEIISRLEEVKKQF------GIKR 476 Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD---LSALHFKEGDSLKI 553 + E D Q+ +I ++ I + IS G+I+ + ++ ++ LS+ K D Sbjct: 477 KSQVEDLVEDLDVDQKEVIIEKEINLWISKDGYIKVIDNNILNKNELSSFGKKPNDMWIS 536 Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQDIVTAFV---- 607 D ++L+S Y++P + + + G I + N+ I+ A V Sbjct: 537 QGVCSNLDHLILISDQANYYSIPLYKISTSKWKEQGVHINSVATTQPNETIINALVIKEF 596 Query: 608 YDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTF--LKVSSEEKMKL--VVKVTGDHV 661 +ST LL+V+ G +++ ++I K K+F +K+S ++ + ++ + Sbjct: 597 INSTQHLLLVTKNG---LIKRTQISDLETKIFNKSFKIMKISDDDSLVYADLISSKTSYC 653 Query: 662 AVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYN 720 +V +N + ++I+ IP S KGV+ + KD I + + + + I + +Y Sbjct: 654 CIVTKNGYAVRYNIEDIPIQSTISKGVKAANLKDDQIISALSLQTNKDII-IFTNKNNYK 712 Query: 721 RSENDLLG-WLGKRGGVGSLVPK 742 + + +L+ ++ + G+ LV K Sbjct: 713 KIDQNLIPIYIRPKKGIRILVEK 735 >gi|118647919|gb|ABL09947.1| DNA gyrase subunit A [Arcobacter nitrofigilis DSM 7299] Length = 803 Score = 370 bits (949), Expect = e-100, Method: Compositional matrix adjust. Identities = 217/564 (38%), Positives = 340/564 (60%), Gaps = 40/564 (7%) Query: 61 MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120 M ++ + A +KKSARIVG+VIGK HPHGD SVYD+LVR+AQ F R PLI GQGNFG+ Sbjct: 1 MHDLNMSARAPYKKSARIVGDVIGKYHPHGDTSVYDALVRMAQSFSMREPLIDGQGNFGS 60 Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180 +DGDSAAA RYTE+R T+++E IL+ +D+D V+F Y++ EP V P++ P LL NG+ Sbjct: 61 VDGDSAAAMRYTESRFTKISEDILKDIDKDTVNFTANYDDTLKEPSVLPTRVPTLLMNGS 120 Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240 GIAVGMAT IP HN+ E+ +A + ++DNPE + ++L+E+I GPDFPTGG I R I+ Sbjct: 121 EGIAVGMATKIPPHNLNELLDATMHILDNPEATADELMEFIQGPDFPTGGTIF-GRRGII 179 Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300 ++Y GRG R+RA+ +E G+ IV+ E+PYQV K+RLIE IA L K+I + + Sbjct: 180 DAYNTGRGRVRIRAKHHIETRGK-KEIIVLDELPYQVNKARLIELIANLTKDKQIEGISE 238 Query: 301 IRDESAED-VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359 +RDES D +R+V+ K ++ +++M +++ + MET F + + + + P+V L Sbjct: 239 VRDESDRDGIRVVIELKKDAM-SEIVMNNLYKSTPMETTFGIIL-LAVYNKEPKVFTLPE 296 Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPV 416 +L +++HR+ V+ RR+ F ++ R IL+GL IA NIDE++ IIR N+ K Sbjct: 297 LLNVFISHRKTVIIRRTIFDLEKAKARAHILEGLKIALDNIDEVVKIIRASANDSDAKEK 356 Query: 417 MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476 + RF L+ Q AIL++RL L L+ ++++E L+A +++S+L S ++ I Sbjct: 357 LELRFGLSPIQSQAILDMRLGRLTGLQRDKLEAEYQELMAIIAELESILKSEEKLVEIIK 416 Query: 477 CEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSH 536 E+ E++E +S S L ++ E+ D +I EP+ V I++ G+++ + Sbjct: 417 EELSEIREKYS-SKRLTDIEDSYDEIDIED-------LIPNEPMVVTITHNGYVKRVPIK 468 Query: 537 SVDLSALHFKEGDSLKIALHAH------------TTDRILLLSTDG-----KAYTLPAGN 579 S + + G K+A+ H T D ++ ++ G K Y +P G Sbjct: 469 SYEKQ----RRGGKGKVAVTTHDDDFIERFFVTNTHDTLMFVTNMGQLYWLKVYRIPEG- 523 Query: 580 LLSGRGHGEAIQLLIDLNHNQDIV 603 S G+A+ LI+L ++ I+ Sbjct: 524 --SRTAKGKAVVNLINLRPDEKIM 545 >gi|314922687|gb|EFS86518.1| DNA gyrase, A subunit [Propionibacterium acnes HL001PA1] gi|314965772|gb|EFT09871.1| DNA gyrase, A subunit [Propionibacterium acnes HL082PA2] gi|315094453|gb|EFT66429.1| DNA gyrase, A subunit [Propionibacterium acnes HL060PA1] gi|327328948|gb|EGE70708.1| DNA gyrase, A subunit [Propionibacterium acnes HL103PA1] Length = 891 Score = 370 bits (949), Expect = e-100, Method: Compositional matrix adjust. Identities = 229/633 (36%), Positives = 356/633 (56%), Gaps = 45/633 (7%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 ++ V +R ++ YL YA+S I RA+PD+RDG KPVHRR+I+AM + G + K + Sbjct: 26 IQPVEIRDEIQNAYLDYAMSVIVGRALPDVRDGLKPVHRRVIYAMYDGGYRPDRGWNKCS 85 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+V+GK HPHGD ++YD+LVRLAQP+ RY L+ GQGNFG+ D AAA RYTE +M Sbjct: 86 RVVGDVMGKYHPHGDSAIYDTLVRLAQPWAMRYKLVQGQGNFGSQGNDGAAAMRYTECKM 145 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 +A +++ +D+D VDF+ Y+ +++EPVV PS+FPNLL NG+SGIAVGMAT+IP+HN+ Sbjct: 146 APLAMEMVRDIDQDTVDFQPNYDNKETEPVVLPSRFPNLLVNGSSGIAVGMATNIPTHNL 205 Query: 197 QEICEAALALIDNPEISIEKLLEY----IIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252 +E+ EA + +P S E+LLE I GPDFP G +IV R+ I ++YR GRG + Sbjct: 206 REVNEAVQWSLAHPNASHEELLEACMERIKGPDFPGGALIV-GRQGIEDAYRTGRGSVTM 264 Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV--R 310 RA +EE +G C+VVTE+PY L KIA+L+ + RI + DIRD+S+ R Sbjct: 265 RAVIDMEEDKKGRQCLVVTELPYMCNPDNLATKIADLVNSGRINGIADIRDDSSARTGQR 324 Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370 +V+ K R P ++M +++ + ++ F NM L + VP+ + LD + W+ H+ E Sbjct: 325 LVIVLK-RDAQPRVVMNNLYKHTALQDTFGCNMLAL-VDNVPRTLRLDQFISYWIDHQME 382 Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQ 427 V+ RR+ +R+ ++ I + L+ A +DE+IA+IR N + + + E Q Sbjct: 383 VIRRRTEYRLAQAEKDAHIQRALVKALDMLDEVIALIRRSPNTEAASTGLQELLDIDEIQ 442 Query: 428 VDAILNLRLRSLRKLEEYQI---KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484 AIL+++LR L LE +I EL+ L+A+ + I L S +Q I+ E+ E+ + Sbjct: 443 ARAILDMQLRRLAALERQKIIDRLEELERLIADYKAI---LASEDRQREIISTELAEIVD 499 Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH 544 + RRT AD ++ I + + V I+ G+ + ++ DL + Sbjct: 500 KYGDE-----RRTRIIA---ADGDFSEEDFIPDDDVVVTITRGGYAKRTRT---DLYRVQ 548 Query: 545 FKEGDSLK---------IALHAHTTDR--ILLLSTDGKAY-----TLPAGNLLSGRGHGE 588 + G ++ +A TT+ IL + G+ Y LP + GH Sbjct: 549 KRGGKGVRGASLRTDDEVAQLFTTTNHQWILFFTNMGRVYRTKVWQLPEAGRDARGGHVA 608 Query: 589 AIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKG 621 + + ++T YD LL+ + KG Sbjct: 609 GLLSFLPDEKIAQVMTLRSYDDAEYLLLATRKG 641 >gi|154508948|ref|ZP_02044590.1| hypothetical protein ACTODO_01464 [Actinomyces odontolyticus ATCC 17982] gi|153798582|gb|EDN81002.1| hypothetical protein ACTODO_01464 [Actinomyces odontolyticus ATCC 17982] Length = 823 Score = 370 bits (949), Expect = e-100, Method: Compositional matrix adjust. Identities = 218/581 (37%), Positives = 333/581 (57%), Gaps = 28/581 (4%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 +EN+ + + + +L YA+S I RA+PD RDG KPV RRI+ M +MGL Sbjct: 14 DENITEIDVSDEMRGSFLEYAVSVIYARALPDARDGLKPVQRRILFQMDQMGLRPDKGHV 73 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KS R+VGEV+GKLHPHGD ++Y++LVRLAQPF R PL+ G GNFG++D D AA RYTE Sbjct: 74 KSQRVVGEVMGKLHPHGDSAIYEALVRLAQPFNLRVPLVDGHGNFGSLD-DGPAAARYTE 132 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 ARM A ++ G+DED VDF Y+ + +P V P+ FP LL NG SGIAVGMAT++ Sbjct: 133 ARMAPAALDLVTGLDEDTVDFVPNYDNQFMQPDVLPAAFPQLLVNGASGIAVGMATNVAP 192 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E A+ L+DNP S+ L+ YI GPD P GG+IV E I E+Y GRG F+ R Sbjct: 193 HNLSETIAGAIHLLDNPSASVADLMRYIPGPDLPEGGVIV-GLEGIKEAYETGRGAFKTR 251 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD--ESAEDVRI 311 A+ +E V I+VT++PY V ++IEKI E A R+ + +++ + +R+ Sbjct: 252 AKVQIERVTARKMGIIVTQLPYMVGPEKVIEKIKENANAGRLKGISSVQNLTDRIHGLRL 311 Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371 V+ KN +P+ +++ ++ + +E F +N L G+ P+ + L +L+ +L HR +V Sbjct: 312 VIEVKN-GFNPEAVLQQLYQRTPLEDSFSINAVALVGGQ-PRTLGLKEMLQVFLDHRLDV 369 Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQV 428 RRS FR++ + R+ +++GLLIA L+ID++IAIIR+ D + +++ F L+E Q Sbjct: 370 TTRRSRFRLKKCEDRLHLVEGLLIAILDIDDVIAIIRSSDDAEIARERLMTAFDLSEAQA 429 Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE---- 484 + IL LRLR L K ++++E D LLA+ + +L + + E+REV + Sbjct: 430 NYILELRLRRLTKFSRIELEAERDELLAKIASLREILEDPELLRALVKKELREVSDRLGT 489 Query: 485 ------IFSKSTDLGRRRTTFC------EVSRADKATLQQAMIEKEPITVVISNRGWIRS 532 + S T +G VSR+ K Q I +P VV+S+ G + Sbjct: 490 PRRTLLLASTGTPVGAAAADDAALAALPSVSRSGKGLDLQ--IPDDPCVVVLSSTGALAR 547 Query: 533 LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573 ++ L D ++ L + ++ +++ DG A+ Sbjct: 548 VEGGD-PLEPGPRAASDGWRVQLPSTARSQVAVVTEDGIAH 587 >gi|73916840|gb|AAZ93288.1| topoisomerase IV subunit A [Streptococcus pneumoniae] Length = 821 Score = 370 bits (949), Expect = e-100, Method: Compositional matrix adjust. Identities = 224/709 (31%), Positives = 400/709 (56%), Gaps = 33/709 (4%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 N++ +SL + ER+ Y+ I++RA+PD+RDG KPV RRI+++M++ G F +++KS Sbjct: 1 NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDGNTFDKSYRKS 60 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 A+ VG ++G HPHGD S+YD++VR++Q + R L+ GN G++DGD AA RYTEAR Sbjct: 61 AKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 120 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 ++++A +LQ ++++ V F +++ + EP V P+ FPNLL NG++GI+ G AT IP HN Sbjct: 121 LSEIAGYLLQDIEKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 180 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 + E+ +AA+ +ID+P I+KL+E++ GPDFPTG II + R+ I ++Y G+G VR++ Sbjct: 181 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAII-QGRDEIKKAYETGKGRVVVRSK 239 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315 +E++ G IV+TEIPY++ K+ L++KI ++ + ++ + ++RDES D + Sbjct: 240 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 299 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 + + +L++ +F +D++ + NM + P+ + + IL ++AHRREV+ R Sbjct: 300 LKKDANTELVLNYLFKYTDLQINYNFNMVAID-NFTPRQVGIVPILSSYIAHRREVILAR 358 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432 S F + ++R+ I++GL+ +DE+IA+IR N+ K + + TE Q +AI+ Sbjct: 359 SRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIV 418 Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492 L+L L + ++ E L + + +++ + +N + E+REVK+ F+ Sbjct: 419 TLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP--- 475 Query: 493 GRRRTTFCEVSRA---DKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FK 546 R ++ + ++A D A+L I +E V ++ G+I+ S S L + Sbjct: 476 --RLSSLEDTAKAIEIDTASL----IAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKR 529 Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIV 603 + D L A TT +L+ ++ G P L R GE + Q + + N++I+ Sbjct: 530 DDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEIL 589 Query: 604 TAFV---YDSTCKLLVVSSKGNAFIVEESEIIA-NTRKGKT--FLKVSSE-EKMKLVVKV 656 V +D V+ G VE E T + K+ + K+ + +++ V + Sbjct: 590 YVEVLDQFDDATTYFAVTRLGQIKRVERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPI 649 Query: 657 TGDHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDGGI--SDVIC 702 D V +V +N L F+I+++P + ++ GV+ + K+ + S IC Sbjct: 650 KLDDVVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSGFIC 698 >gi|282853047|ref|ZP_06262384.1| DNA gyrase, A subunit [Propionibacterium acnes J139] gi|282582500|gb|EFB87880.1| DNA gyrase, A subunit [Propionibacterium acnes J139] gi|314982913|gb|EFT27005.1| DNA gyrase, A subunit [Propionibacterium acnes HL110PA3] gi|315091219|gb|EFT63195.1| DNA gyrase, A subunit [Propionibacterium acnes HL110PA4] Length = 891 Score = 370 bits (949), Expect = e-100, Method: Compositional matrix adjust. Identities = 229/633 (36%), Positives = 356/633 (56%), Gaps = 45/633 (7%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 ++ V +R ++ YL YA+S I RA+PD+RDG KPVHRR+I+AM + G + K + Sbjct: 26 IQPVEIRDEIQNAYLDYAMSVIVGRALPDVRDGLKPVHRRVIYAMYDGGYRPDRGWNKCS 85 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+V+GK HPHGD ++YD+LVRLAQP+ RY L+ GQGNFG+ D AAA RYTE +M Sbjct: 86 RVVGDVMGKYHPHGDSAIYDTLVRLAQPWAMRYKLVQGQGNFGSQGNDGAAAMRYTECKM 145 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 +A +++ +D+D VDF+ Y+ +++EPVV PS+FPNLL NG+SGIAVGMAT+IP+HN+ Sbjct: 146 APLAMEMVRDIDQDTVDFQPNYDNKETEPVVLPSRFPNLLVNGSSGIAVGMATNIPTHNL 205 Query: 197 QEICEAALALIDNPEISIEKLLEY----IIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252 +E+ EA + +P S E+LLE I GPDFP G +IV R+ I ++YR GRG + Sbjct: 206 REVNEAVQWSLAHPNASHEELLEACMERIKGPDFPGGALIV-GRQGIEDAYRTGRGSVTM 264 Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV--R 310 RA +EE +G C+VVTE+PY L KIA+L+ + RI + DIRD+S+ R Sbjct: 265 RAVIDMEEDKKGRQCLVVTELPYMCNPDNLATKIADLVNSGRINGIADIRDDSSARTGQR 324 Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370 +V+ K R P ++M +++ + ++ F NM L + VP+ + LD + W+ H+ E Sbjct: 325 LVIVLK-RDAQPRVVMNNLYKHTALQDTFGCNMLAL-VDNVPRTLRLDQFISYWIDHQME 382 Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQ 427 V+ RR+ +R+ ++ I + L+ A +DE+IA+IR N + + + E Q Sbjct: 383 VIRRRTEYRLAQAEKDAHIQRALVKALDMLDEVIALIRRSPNTEAASTGLQELLDIDEIQ 442 Query: 428 VDAILNLRLRSLRKLEEYQI---KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484 AIL+++LR L LE +I EL+ L+A+ + I L S +Q I+ E+ E+ + Sbjct: 443 ARAILDMQLRRLAALERQKIIDRLEELERLIADYKAI---LASEDRQREIISTELAEIVD 499 Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH 544 + RRT AD ++ I + + V I+ G+ + ++ DL + Sbjct: 500 KYGDE-----RRTRIIA---ADGDFSEEDFIPDDDVVVTITRGGYAKRTRT---DLYRVQ 548 Query: 545 FKEGDSLK---------IALHAHTTDR--ILLLSTDGKAY-----TLPAGNLLSGRGHGE 588 + G ++ +A TT+ IL + G+ Y LP + GH Sbjct: 549 KRGGKGVRGASLRTDDEVAQLFTTTNHQWILFFTNMGRVYRTKVWQLPEAGRDARGGHVA 608 Query: 589 AIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKG 621 + + ++T YD LL+ + KG Sbjct: 609 GLLSFLPDEKIAQVMTLRSYDDAEYLLLATRKG 641 >gi|169627127|ref|YP_001700776.1| DNA gyrase subunit A [Mycobacterium abscessus ATCC 19977] gi|169239094|emb|CAM60122.1| DNA gyrase (subunit A) GyrA (DNA topoisomerase) [Mycobacterium abscessus] Length = 839 Score = 370 bits (949), Expect = e-100, Method: Compositional matrix adjust. Identities = 245/765 (32%), Positives = 405/765 (52%), Gaps = 38/765 (4%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 + ++ V ++ ++ Y+ YA+S I RA+P++RDG KPVHRR+++AM + G + K Sbjct: 15 DRIEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAMYDSGFRPDRSHAK 74 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 SAR V E +G HPHGD S+YD+LVR+AQP+ RYPL+ GQGNFG+ D AAA RYTEA Sbjct: 75 SARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSPGNDPAAAMRYTEA 134 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 R+T +A +L+ +DE+ VDF Y+ EP V PS+FPNLLANG+ GIAVGMAT++P H Sbjct: 135 RLTPLAMEMLREIDEETVDFIPNYDGRVMEPTVLPSRFPNLLANGSGGIAVGMATNMPPH 194 Query: 195 NVQEICEAALALIDN----PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250 N++E+ EA +DN E +++ + E I GPDFPT G+IV + + I ++Y GRG Sbjct: 195 NLRELAEAVYWALDNHEADEETTLKAVCEKITGPDFPTSGLIVGT-QGIHDAYTTGRGSI 253 Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV- 309 R+R +EE +G +V+TE+PYQV I IAE + +I + +I D+S++ V Sbjct: 254 RMRGVAEIEEDSKGRTSLVITELPYQVNHDNFITSIAEQVRDGKIAGISNIEDQSSDRVG 313 Query: 310 -RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368 RIV+ K R +++ +++ + ++T F NM + G VP+ + LD +++ ++ H+ Sbjct: 314 LRIVVVLK-RDAVAKVVLNNLYKHTQLQTSFGANMLSIVDG-VPRTLRLDQLIRLYVNHQ 371 Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTE 425 +V+ RR+ +R++ + R IL+GL+ A +DE+IA+IR D + ++ + E Sbjct: 372 LDVIIRRTRYRLRKANERAHILRGLVKALDALDEVIALIRASQTVDIARTGLIELLDVDE 431 Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485 Q AIL+++LR L LE +I +L + AE ++ +L ++Q + E+ E+ E Sbjct: 432 IQAQAILDMQLRRLAALERQKIIDDLAKIEAEIADLEDILAKPERQRAIVKDELAEITEK 491 Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHS 537 + RRT AD + +I +E + V I+ G+ RS K Sbjct: 492 YGDD-----RRTRIIS---ADGDVADEDLIAREDVVVTITETGYAKRTKTDLYRSQKRGG 543 Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLID 595 + K+ D +K T D IL +T G+ Y A +L + G+ + L+ Sbjct: 544 KGVQGAGLKQDDIVKHFFVCSTHDWILFFTTKGRVYRAKAYDLPEAARTARGQHVANLLA 603 Query: 596 LNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV-SSEEKMK 651 + I Y+ L++ + G + +E +N G + + +E + Sbjct: 604 FQPEERIAQVIQIKSYEDAPYLVLATKNGLVKKSKLTEFDSNRSGGLVAVNLRDGDELVG 663 Query: 652 LVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVR-LQSYKDGGISDVICFKICEGLT 710 V+ D + +V + + + FS G+ +Q + G D++ + T Sbjct: 664 AVLCSAEDDLLLVSAHGQSIRFSATDEALRPMGRATSGVQGMRFNGEDDLLSLNVVREGT 723 Query: 711 W--IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753 + + ++G R+ + G RGG G L + PR G + + Sbjct: 724 YLLVATSGGYSKRTAIEEYPVQG-RGGKGVLTVQYDPRRGSLVGA 767 >gi|58336360|ref|YP_192945.1| DNA gyrase subunit A [Lactobacillus acidophilus NCFM] gi|227902589|ref|ZP_04020394.1| DNA gyrase subunit A [Lactobacillus acidophilus ATCC 4796] gi|58253677|gb|AAV41914.1| DNA gyrase subunit A [Lactobacillus acidophilus NCFM] gi|227869678|gb|EEJ77099.1| DNA gyrase subunit A [Lactobacillus acidophilus ATCC 4796] Length = 824 Score = 370 bits (949), Expect = e-100, Method: Compositional matrix adjust. Identities = 216/621 (34%), Positives = 354/621 (57%), Gaps = 38/621 (6%) Query: 8 NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67 + N + ++ V L + +L YA+S I RA+PD+RDG KPV RRI++ MSE+G+ Sbjct: 2 DENQTQDHRIRNVDLTGMMRSSFLDYAMSVIVARALPDVRDGLKPVQRRILYGMSELGVT 61 Query: 68 FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAA 127 +KKSARIVGEV+GK HPHGD S+Y ++ +AQ F RY L+ G GNFG++DGD A Sbjct: 62 PDKPYKKSARIVGEVMGKFHPHGDSSIYLAMAHMAQDFSYRYMLVDGHGNFGSVDGDEPA 121 Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187 A RYTEARM+++A +L+ ++++ +D++ Y++ +SEPVV P++ PNLL NG +GIAVGM Sbjct: 122 AMRYTEARMSKIAVEMLRDINKNTIDWQRNYDDTESEPVVLPARIPNLLVNGANGIAVGM 181 Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247 T+IP HN+ E+ L+ NP+ + + L++ I GPDFPT G I+ R I +Y G+ Sbjct: 182 TTNIPPHNLSEVISGLHMLMRNPDATTKDLMKEIPGPDFPT-GGIIMGRGGIYRAYESGK 240 Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307 G VRA+ +E G I+V+EIP+ V K+ L++KIA+L K I + +RDES + Sbjct: 241 GNIVVRAKTNIETEKSGRERIIVSEIPFMVNKAELVKKIADLAREKVIDGITGVRDESDQ 300 Query: 308 DVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAH 367 + R +++ ++F + M+ F +NM + G P + L +L+ +L H Sbjct: 301 TGMRITIDIRRDASASVVLNNLFKQTQMQANFGMNMVAIVDG-APHYLTLKQMLQYYLDH 359 Query: 368 RREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLT 424 + +V+ RR+ F + + R IL+GL IA NIDEI+ IIR + D K ++SRF L Sbjct: 360 QEDVVTRRTKFELAKAEARAHILEGLRIALDNIDEIVHIIRSSHSSDIAKATLISRFGLD 419 Query: 425 ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484 + Q AIL++RL L LE ++++E L A+ +L ++ I E+ ++++ Sbjct: 420 DKQSQAILDMRLVRLTGLERDKVEAEYQELQAKIADYKDILAKPERIDQIIYDELLDIQK 479 Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQ-QAMIEKEPITVVISNRGWIRSLKSHSVD---- 539 F RRT E+ ++ +++ + +IEK+ I + +++ G+I+ + Sbjct: 480 RFGDE-----RRT---EIGASEVVSIEDEDLIEKQNILLTVTHNGYIKRMPIQEFKTQNR 531 Query: 540 ----LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYT---------------LPAGNL 580 + + ++GD ++ +++ T D +L + GK Y+ LP NL Sbjct: 532 GGKGIKGMGVQDGDFIEHLIYSSTHDMLLFFTNAGKVYSKKAYEIPEYGRMAKGLPIVNL 591 Query: 581 LSGRGHGEAIQLLIDLNHNQD 601 L GE +Q ++++ D Sbjct: 592 LQLE-KGEKVQAVVNIPEGAD 611 >gi|251796503|ref|YP_003011234.1| DNA gyrase subunit alpha [Paenibacillus sp. JDR-2] gi|247544129|gb|ACT01148.1| DNA gyrase, A subunit [Paenibacillus sp. JDR-2] Length = 817 Score = 370 bits (949), Expect = e-100, Method: Compositional matrix adjust. Identities = 206/587 (35%), Positives = 345/587 (58%), Gaps = 20/587 (3%) Query: 28 ERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLH 87 +R+ Y+ I++RAIPD+RDG KPV RRI++AM + ++KSA+ VG+V+G H Sbjct: 18 DRFGRYSKYIIQDRAIPDVRDGLKPVQRRILYAMYDSNNTPDKPYRKSAKTVGDVMGNYH 77 Query: 88 PHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGV 147 PHGD S+Y+ +VR+AQP+ + LI G GN+G++D D AAA RYTEAR++ +A IL+ + Sbjct: 78 PHGDSSIYEGMVRMAQPWKMGHVLIDGHGNWGSMDDDPAAAMRYTEARLSPIAMEILRDI 137 Query: 148 DEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALI 207 D+ V F+D ++ EPVV PS++PNLL NGTSGI+ G AT IP H+++E +A +A++ Sbjct: 138 DKRTVQFKDNFDNTTKEPVVLPSRYPNLLVNGTSGISAGFATEIPPHSLRETIDACIAVM 197 Query: 208 DNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWC 267 PE+++E+L+ + GPDFPTGGII+ E I E+Y G+G +R++ +E+V G Sbjct: 198 ARPEMTVEELMGIVKGPDFPTGGIIM-GEEGIREAYTTGKGRIYIRSKVEIEDVRGGRQQ 256 Query: 268 IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKNRSLDPDLLM 326 I +TEIPYQV KSRL+ + + + K++ + ++RDES + +RIV+ K + D + ++ Sbjct: 257 ITITEIPYQVVKSRLVSAMENIRLEKKVEGISEVRDESGRNGLRIVVELKKEA-DANGIL 315 Query: 327 ESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRR 386 + +D++ + NM V + + PQ + + IL ++ H++EV+ R+ + ++ + R Sbjct: 316 AYLLKKTDLQVTYNFNM-VAIVNKAPQQLGIKQILNAYINHQKEVVTHRTQYELEKAEER 374 Query: 387 VEILKGLLIAYLNIDEIIAII---RNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLE 443 +++GL+ A +DE+IA I +N + +V+++ +E Q DAIL L+L L LE Sbjct: 375 AHVVEGLVKALNILDEVIATIKASKNRADAQNNLVAKYGFSERQADAILTLQLYRLTNLE 434 Query: 444 EYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVS 503 ++ E + + S+L S K+ I E+ E++E + + RR + EV Sbjct: 435 ITSLEKEWKETQKKIAYLRSILESEKKLLGVIKDELTEIREKYG----IDRRSSIRGEVE 490 Query: 504 RADKATLQQAMIEKEPITVVISNRGWIR-----SLKSHSVDLSALHFKEGDSLKIALHAH 558 K L + M++ E + V +S G+++ S DL KEGD++ + Sbjct: 491 EL-KVNL-EVMVQSEDVIVTLSEEGYMKRTSMLSFTRSGGDLQTAGVKEGDAISSVYEVN 548 Query: 559 TTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIV 603 T D +LL + G+ Y LP + + G A+ ++ + + IV Sbjct: 549 TIDNLLLFTRKGQYYMLPVHQIPEFKWKDTGTAVVNIVPIPKDDSIV 595 >gi|56460468|ref|YP_155749.1| DNA gyrase subunit A [Idiomarina loihiensis L2TR] gi|56179478|gb|AAV82200.1| DNA gyrase subunit A [Idiomarina loihiensis L2TR] Length = 828 Score = 370 bits (949), Expect = e-100, Method: Compositional matrix adjust. Identities = 228/594 (38%), Positives = 335/594 (56%), Gaps = 64/594 (10%) Query: 61 MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120 MSE+ DF +KKSAR+VG+VIGK HPHGD +VYD++VR+AQ F RY L+ GQGNFG+ Sbjct: 1 MSELRNDFNKPYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQNFSLRYMLVDGQGNFGS 60 Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180 +DGDSAAA RYTE RM ++A +L +D++ VDF D Y+ + P V P++ PNLL NG+ Sbjct: 61 VDGDSAAAMRYTEIRMAKIAHQLLADLDKETVDFVDNYDGTERIPDVLPTRVPNLLVNGS 120 Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240 SGIAVGMAT+IP HN+ E+ + ALA+IDNP+I +E L+EYI GPDFPT I R IV Sbjct: 121 SGIAVGMATNIPPHNLTEVVDGALAMIDNPDIDVEGLMEYIPGPDFPTAATI-SGRSGIV 179 Query: 241 ESYRLGRGGFRVRARWCVE-EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299 E+Y+ GRG +RA+ +E + G I+VTEIPYQV K+RLIEKIAEL+ KR+ + Sbjct: 180 EAYKTGRGRIHLRAQAEIEVDEKTGKETIIVTEIPYQVNKARLIEKIAELVKEKRVEGIS 239 Query: 300 DIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359 +RDES +D ++ R ++++ ++ + ++ F +NM L G+ P++ L Sbjct: 240 ALRDESDKDGMRIVIEIRRGDVGEVVLNHLYANTQLQVVFGINMVALDKGQ-PRLFNLRD 298 Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPV 416 +L ++ HRREV+ RRS + ++ R IL+GL I+ NIDEII +IR P K Sbjct: 299 MLDCFVRHRREVVTRRSVYELRKARERAHILEGLAISLANIDEIIELIRRSPTPAEAKAG 358 Query: 417 MVSR----------------------------------FSLTENQVDAILNLRLRSLRKL 442 +++R + LTE Q AIL+LRL L L Sbjct: 359 LIARAWQLGDVAAMLETAGVDAARPDHLPEEYGIRDGNYHLTEEQAQAILDLRLHKLTGL 418 Query: 443 EEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEV 502 E +I E LL + ++ +LNS ++ I E+ E++ F G R T ++ Sbjct: 419 EHEKILDEYKGLLEQIAELLHILNSSERLMEVIREELVEIRNNF------GDERKT--DI 470 Query: 503 SRADKATLQQAMIEKEPITVVISNRGWIR--------SLKSHSVDLSALHFKEGDSLKIA 554 + A + +I +E + + +S+ G+++ + + +A K+ D ++ Sbjct: 471 TAAAHDISMEDLINEEDVVLTLSHEGYVKYQPLTEYEAQRRGGKGKAATKMKDEDFIERL 530 Query: 555 LHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIV 603 A+T D IL ST G K Y LP L S G+ I L+ L ++ I Sbjct: 531 WVANTHDTILCFSTRGRIYWMKVYQLP---LASRASRGKPIVNLLPLEADERIT 581 >gi|260904976|ref|ZP_05913298.1| DNA gyrase subunit A [Brevibacterium linens BL2] Length = 852 Score = 369 bits (948), Expect = e-100, Method: Compositional matrix adjust. Identities = 211/585 (36%), Positives = 340/585 (58%), Gaps = 33/585 (5%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 V+ V L ++ YL YA+S I RA+PD+RDG KPVHRR+++AM + G F K + Sbjct: 14 VEQVDLNLEMQRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMFDGGYRPDRNFSKCS 73 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+V+G+ HPHGD ++YD++VRL QP+ RYPL++GQGNFG+ D AAA RYTE +M Sbjct: 74 RVVGDVMGQYHPHGDSAIYDAMVRLVQPWTMRYPLVAGQGNFGSPGDDGAAAPRYTECKM 133 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 +A +++ ++E VDF+D Y+ + EP V PS+FPNLL NG+SGIAVGMAT+IP HN+ Sbjct: 134 APLALEMVRDIEEGTVDFQDNYDGRNQEPTVLPSRFPNLLVNGSSGIAVGMATNIPPHNL 193 Query: 197 QEICEAALALIDNPEISIEKLLEYII----GPDFPTGGIIVESRESIVESYRLGRGGFRV 252 +E+ A L+ +PE S E+ LE ++ GPDFP G I+ R+ I ++YR GRG Sbjct: 194 REVAAGAQWLLSHPEASKEEALEALLGIVKGPDFPMGATIL-GRKGIEDTYRTGRGSITQ 252 Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV--R 310 RA VEE+ +G C+VVT++PY V L KIA + ++ + D+RDES+ R Sbjct: 253 RAVVEVEEI-QGRTCLVVTQLPYMVNPDTLAAKIASYVKDGKVAGIADLRDESSGRTGQR 311 Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370 +V+ K R +++ +++ + ++ F NM + + VP+ + LD L+ W+ H+ E Sbjct: 312 LVIVLK-RDAVAKVVLNNLYKHTSLQENFSANMLAI-VDSVPRTLSLDSFLRLWVKHQVE 369 Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQ 427 V+ RR+ FR++ + R IL+G L A +DE+IA+IR + D+ + ++ + E Q Sbjct: 370 VIVRRTEFRLRKAEERAHILRGYLKALDALDEVIALIRRSPSSDEARSGLMDLLEVDEIQ 429 Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487 +AIL+L+LR L LE +I+ E + + + + +L + +Q ++ E+ E+ E + Sbjct: 430 ANAILDLQLRRLAALERLKIQEEAEKIEQQIAEFKYILATPARQREIVSEELDEIVERYG 489 Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSH--------SVD 539 RRT ++ D + +I +E + V I+ G+ + ++H Sbjct: 490 DD-----RRTKI--MAGFDGDVSMEDLIPEEEVVVTITRGGYAKRTQNHLYRAQHRGGKG 542 Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGN 579 + + + D ++ T + +L + G KAY LP G+ Sbjct: 543 IKGANLRGDDVVEQFFVTSTHNWLLFFTNTGRVYRAKAYELPEGS 587 >gi|315105173|gb|EFT77149.1| DNA gyrase, A subunit [Propionibacterium acnes HL050PA2] Length = 891 Score = 369 bits (948), Expect = e-100, Method: Compositional matrix adjust. Identities = 229/633 (36%), Positives = 356/633 (56%), Gaps = 45/633 (7%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 ++ V +R ++ YL YA+S I RA+PD+RDG KPVHRR+I+AM + G + K + Sbjct: 26 IQPVEIRDEIQNAYLDYAMSVIVGRALPDVRDGLKPVHRRVIYAMYDGGYRPDRGWNKCS 85 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+V+GK HPHGD ++YD+LVRLAQP+ RY L+ GQGNFG+ D AAA RYTE +M Sbjct: 86 RVVGDVMGKYHPHGDSAIYDTLVRLAQPWAMRYKLVQGQGNFGSQGNDGAAAMRYTECKM 145 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 +A +++ +D+D VDF+ Y+ +++EPVV PS+FPNLL NG+SGIAVGMAT+IP+HN+ Sbjct: 146 APLAMEMVRDIDQDTVDFQPNYDNKETEPVVLPSRFPNLLVNGSSGIAVGMATNIPTHNL 205 Query: 197 QEICEAALALIDNPEISIEKLLEY----IIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252 +E+ EA + +P S E+LLE I GPDFP G +IV R+ I ++YR GRG + Sbjct: 206 REVNEAVQWSLAHPNASHEELLEACMERIKGPDFPGGALIV-GRQGIEDAYRTGRGSVTM 264 Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV--R 310 RA +EE +G C+VVTE+PY L KIA+L+ + RI + DIRD+S+ R Sbjct: 265 RAVIDMEEDKKGRQCLVVTELPYMCNPDNLATKIADLVNSGRINGIADIRDDSSARTGQR 324 Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370 +V+ K R P ++M +++ + ++ F NM L + VP+ + LD + W+ H+ E Sbjct: 325 LVIVLK-RDAQPRVVMNNLYKHTALQDTFGCNMLAL-VDNVPRTLRLDQFISYWIDHQME 382 Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQ 427 V+ RR+ +R+ ++ I + L+ A +DE+IA+IR N + + + E Q Sbjct: 383 VIRRRTEYRLAQAEKDAHIQRALVKALDMLDEVIALIRRSPNTEAASTGLQELLDIDEIQ 442 Query: 428 VDAILNLRLRSLRKLEEYQI---KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484 AIL+++LR L LE +I EL+ L+A+ + I L S +Q I+ E+ E+ + Sbjct: 443 ARAILDMQLRRLAALERQKIIDRLEELERLIADYKAI---LASEDRQREIISTELAEIVD 499 Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH 544 + RRT AD ++ I + + V I+ G+ + ++ DL + Sbjct: 500 KYGDE-----RRTRIIA---ADGDFSEEDFIPDDDVVVTITRGGYAKRTRT---DLYRVQ 548 Query: 545 FKEGDSLK---------IALHAHTTDR--ILLLSTDGKAY-----TLPAGNLLSGRGHGE 588 + G ++ +A TT+ IL + G+ Y LP + GH Sbjct: 549 KRGGKGVRGASLRTDDEVAQLFTTTNHQWILFFTNMGRVYRTKVWQLPEAGRDARGGHVA 608 Query: 589 AIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKG 621 + + ++T YD LL+ + KG Sbjct: 609 GLLSFLPDEKIAQVMTLRSYDDAEYLLLATRKG 641 >gi|29376173|ref|NP_815327.1| DNA topoisomerase IV subunit A [Enterococcus faecalis V583] gi|255972744|ref|ZP_05423330.1| DNA topoisomerase IV subunit A [Enterococcus faecalis T1] gi|256853175|ref|ZP_05558545.1| topoisomerase IV A subunit [Enterococcus faecalis T8] gi|256959029|ref|ZP_05563200.1| DNA topoisomerase IV subunit A [Enterococcus faecalis DS5] gi|257085133|ref|ZP_05579494.1| DNA topoisomerase IV subunit A [Enterococcus faecalis Fly1] gi|257086694|ref|ZP_05581055.1| DNA topoisomerase IV subunit A [Enterococcus faecalis D6] gi|257089934|ref|ZP_05584295.1| DNA topoisomerase IV subunit A [Enterococcus faecalis CH188] gi|257419345|ref|ZP_05596339.1| DNA topoisomerase IV subunit A [Enterococcus faecalis T11] gi|300860448|ref|ZP_07106535.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TUSoD Ef11] gi|29343636|gb|AAO81397.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis V583] gi|255963762|gb|EET96238.1| DNA topoisomerase IV subunit A [Enterococcus faecalis T1] gi|256711634|gb|EEU26672.1| topoisomerase IV A subunit [Enterococcus faecalis T8] gi|256949525|gb|EEU66157.1| DNA topoisomerase IV subunit A [Enterococcus faecalis DS5] gi|256993163|gb|EEU80465.1| DNA topoisomerase IV subunit A [Enterococcus faecalis Fly1] gi|256994724|gb|EEU82026.1| DNA topoisomerase IV subunit A [Enterococcus faecalis D6] gi|256998746|gb|EEU85266.1| DNA topoisomerase IV subunit A [Enterococcus faecalis CH188] gi|257161173|gb|EEU91133.1| DNA topoisomerase IV subunit A [Enterococcus faecalis T11] gi|300849487|gb|EFK77237.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TUSoD Ef11] Length = 820 Score = 369 bits (948), Expect = e-100, Method: Compositional matrix adjust. Identities = 211/618 (34%), Positives = 366/618 (59%), Gaps = 19/618 (3%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 + V+ ++L + +R+ Y+ I+ERA+PD+RDG KPV RRI+ +M++ G F F+K Sbjct: 5 QEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFSMNKDGNTFDKGFRK 64 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 SA+ VG ++G HPHGD S+Y+++VRL+Q + R LI GN G++DGD AA RYTEA Sbjct: 65 SAKSVGNIMGNYHPHGDSSIYEAMVRLSQDWKLREVLIEMHGNNGSMDGDPPAAMRYTEA 124 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 R++Q++ +L+ +D++ VDF +++ + EP V P+K+PNLL NG++GI+ G AT IP+H Sbjct: 125 RLSQLSGELLKDIDKNTVDFVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATEIPTH 184 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 N+ EI + + LID+P S+EKL+EYI GPDFPTGGI+ + + I ++Y GRG +RA Sbjct: 185 NLAEIIDGTVYLIDHPNASLEKLMEYIPGPDFPTGGIL-QGKAEIKKAYETGRGKVILRA 243 Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314 + +E + G IV++EIPY+V K+ L++K+ E+ + K++ + ++RDES ++ Sbjct: 244 KTKIEPLKGGKQQIVISEIPYEVNKATLVKKMDEIRLNKKVDGIAEVRDESDRTGLQIVV 303 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 + ++ + ++ +F ++++ + NM + PQ + L IL+ ++ HR+ V+ Sbjct: 304 ELKKDVNAEGILNYLFKNTELQINYNFNMVAID-NMTPQQVGLKRILESYITHRKSVIIN 362 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDK--PKPVMVSRFSLTENQVDAI 431 R F + +R I+ GL+ A +D++IA IR ++DK K +VS ++ TE Q +AI Sbjct: 363 RCQFELDKARKREHIVAGLIKALSILDKVIATIRGSKDKKDAKKNLVSDYAFTEEQAEAI 422 Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491 + L+L L + ++ E L + ++ ++LN+ K+ ++ + E+REVK+ + Sbjct: 423 VTLQLYRLTNTDITDLQEEAKTLEQQIAELLNILNNEKELFSVMKKELREVKKQY----- 477 Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSVDL-SALHFKEG 548 G R T E + ++ +E + V +++ G+I+ S++S++ + KEG Sbjct: 478 -GNPRLTQIEEEIQEIKIETAVLVAQEDVVVTVTHEGYIKRSSIRSYTASKPEEIGMKEG 536 Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAI-QLLIDLNHNQDIVTA 605 D L A +T D +LL++ G P L L + GE I Q +++L ++ I+ Sbjct: 537 DFLLYAGEVNTLDHLLLVTNKGNMIYRPVHELPDLRWKEIGEHISQTILNLAIDESIIAV 596 Query: 606 FVYD--STCKLLVVSSKG 621 + Y S K V +K Sbjct: 597 YPYKELSPTKTFVFITKA 614 >gi|256370830|ref|YP_003108654.1| DNA gyrase, A subunit [Acidimicrobium ferrooxidans DSM 10331] gi|256007414|gb|ACU52981.1| DNA gyrase, A subunit [Acidimicrobium ferrooxidans DSM 10331] Length = 816 Score = 369 bits (948), Expect = e-100, Method: Compositional matrix adjust. Identities = 242/704 (34%), Positives = 387/704 (54%), Gaps = 39/704 (5%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 NV+ + L+ +E +L Y+LS I RA+PD RDG KPVHRRI+++M + G K Sbjct: 11 NVELIELQEEMERSFLEYSLSVIIARALPDARDGLKPVHRRILYSMYDAGYRPDRPHVKC 70 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA-AAYRYTEA 134 A++VG+V+ + HPHGD ++YD+LVR+AQ F +PLI G GNFG+ D + AA RYTE Sbjct: 71 AKVVGDVMSRFHPHGDAAIYDALVRMAQDFSLLHPLIDGHGNFGSPDPSTGPAASRYTEC 130 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 R+ +A +L G+DED VDF Y+ + EP V P++FPNLL NG+ GIAVGMAT IPSH Sbjct: 131 RLAPIALELLAGIDEDTVDFVPNYDSQTVEPSVLPARFPNLLVNGSQGIAVGMATQIPSH 190 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 N+ E+ +A LID+PE ++++L+ ++ GPDFPTGGII+ R+ I ++YR GRG ++RA Sbjct: 191 NLGEVVDAIAYLIDHPEATVDELMRFVPGPDFPTGGIIL-GRDGIRDAYRTGRGSVKLRA 249 Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD----ESAEDVR 310 +EE R + IVVTEIP+Q + +KI L+ K LLE IRD + + R Sbjct: 250 VATIEE-ARSGYQIVVTEIPFQTSVEVIADKIRHLVEEK---LLEGIRDMKNFSAGSETR 305 Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370 V+ K R +P++++ +++ L+ ++T FP+ M L G P+ + L G+ + ++ H+RE Sbjct: 306 FVIELK-RDANPNVVLNNLYRLTPLQTSFPIQMLALVDG-APRTLNLLGLCQIYVDHQRE 363 Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSR----FSLTEN 426 V+ RRS FR+ R+ I++GLL +D +IA IR + + F +E Sbjct: 364 VIRRRSEFRLGKARERLHIVEGLLSCIDQLDAVIATIRASEDRAAARAALMAEPFGFSEL 423 Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486 Q + IL++ L L +L +++ E L A +++++L + Q+ + + + E+ Sbjct: 424 QANHILDMTLGRLTRLGREELEEEAATLRATIAELEAIL-ADAQRLSAVVKD-----EML 477 Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLS----- 541 + + + + R T EV D A + +IE EPI V+IS G+I+++ S Sbjct: 478 AATAEYRQARRTRFEVDPGDFAA--EDLIEDEPIVVLISRSGYIKAVPESSFKAQGRGGR 535 Query: 542 ---ALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDL 596 K+ D + + + R+L+ S+ G+ Y L L L G A+ L+ L Sbjct: 536 GVVGARVKDEDEIAHVISSSMLSRLLVFSSRGRVYQLRGYELPKLERSARGTALVNLVPL 595 Query: 597 NHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653 ++ I + + L+ + G +E + R G + V ++++ V Sbjct: 596 ADDERITSVMGTKDFPEDADLVFFTRNGMVKRTAMAEYARSRRDGIIAIDVRGDDELVSV 655 Query: 654 VKVTGDHVAVVGENR-KLLIFSIDQIPEMSRGK-GVRLQSYKDG 695 V T +H VV R ++L F + ++ R GVR DG Sbjct: 656 VVATEEHDGVVFTKRGQVLRFPLAEVRRTGRATAGVRSIRRADG 699 >gi|256619113|ref|ZP_05475959.1| DNA topoisomerase IV subunit A [Enterococcus faecalis ATCC 4200] gi|256598640|gb|EEU17816.1| DNA topoisomerase IV subunit A [Enterococcus faecalis ATCC 4200] Length = 820 Score = 369 bits (948), Expect = e-100, Method: Compositional matrix adjust. Identities = 211/618 (34%), Positives = 366/618 (59%), Gaps = 19/618 (3%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 + V+ ++L + +R+ Y+ I+ERA+PD+RDG KPV RRI+ +M++ G F F+K Sbjct: 5 QEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFSMNKDGNTFDKGFRK 64 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 SA+ VG ++G HPHGD S+Y+++VRL+Q + R LI GN G++DGD AA RYTEA Sbjct: 65 SAKSVGNIMGNYHPHGDSSIYEAMVRLSQDWKLREVLIEMHGNNGSMDGDPPAAMRYTEA 124 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 R++Q++ +L+ +D++ VDF +++ + EP V P+K+PNLL NG++GI+ G AT IP+H Sbjct: 125 RLSQLSGELLKDIDKNTVDFVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATEIPTH 184 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 N+ EI + + LID+P S+EKL+EYI GPDFPTGGI+ + + I ++Y GRG +RA Sbjct: 185 NLAEIIDGTVYLIDHPNASLEKLMEYIPGPDFPTGGIL-QGKAEIKKAYETGRGKVILRA 243 Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314 + +E + G IV++EIPY+V K+ L++K+ E+ + K++ + ++RDES ++ Sbjct: 244 KTKIEPLKGGKQQIVISEIPYEVNKATLVKKMDEIRLNKKVDGIAEVRDESDRTGLQIVV 303 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 + ++ + ++ +F ++++ + NM + PQ + L IL+ ++ HR+ V+ Sbjct: 304 ELKKDVNAEGILNYLFKNTELQINYNFNMVAID-NMTPQQVGLKRILESYITHRKSVIIN 362 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDK--PKPVMVSRFSLTENQVDAI 431 R F + +R I+ GL+ A +D++IA IR ++DK K +VS ++ TE Q +AI Sbjct: 363 RCQFELDKARKREHIVAGLIKALSILDKVIATIRGSKDKKDAKKNLVSDYAFTEEQAEAI 422 Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491 + L+L L + ++ E L + ++ ++LN+ K+ ++ + E+REVK+ + Sbjct: 423 VTLQLYRLTNTDITDLQEEAKTLEQQIAELLNILNNEKELFSVMKKELREVKKQY----- 477 Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSVDL-SALHFKEG 548 G R T E + ++ +E + V +++ G+I+ S++S++ + KEG Sbjct: 478 -GNPRLTQIEEEIQEIKIETAVLVAQEDVVVTVTHEGYIKRSSIRSYTASKPEEIGMKEG 536 Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAI-QLLIDLNHNQDIVTA 605 D L A +T D +LL++ G P L L + GE I Q +++L ++ I+ Sbjct: 537 DFLLYAGEVNTLDHLLLVTNKGNMIYRPVHELPDLRWKEIGEHISQTILNLAIDESIIAV 596 Query: 606 FVYD--STCKLLVVSSKG 621 + Y S K V +K Sbjct: 597 YPYKELSPTKTFVFITKA 614 >gi|56475927|ref|YP_157516.1| DNA gyrase subunit A [Aromatoleum aromaticum EbN1] gi|56311970|emb|CAI06615.1| DNA gyrase subunit A [Aromatoleum aromaticum EbN1] Length = 876 Score = 369 bits (948), Expect = e-100, Method: Compositional matrix adjust. Identities = 224/604 (37%), Positives = 337/604 (55%), Gaps = 60/604 (9%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 +SL + YL YA+S I RA+PD RDG KPVHRR++ AM E+ D+ A+KKSARIV Sbjct: 11 ISLEDEMRHSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHELSNDWNKAYKKSARIV 70 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGD +VYD++VR+AQ F RY L+ GQGNFG++DGD+AAA RYTE RM ++ Sbjct: 71 GDVIGKYHPHGDSAVYDTIVRMAQNFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMARI 130 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 +L +D++ VDF Y+ + EP++ P+K PNLL NG+SGIAVGMAT+IP HN+ E+ Sbjct: 131 GHELLADIDKETVDFGPNYDGSEREPLILPAKIPNLLINGSSGIAVGMATNIPPHNLGEV 190 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 +A L L++NP+ IE+L+ + PDFPT +I + + YR GRG +RAR E Sbjct: 191 LDACLKLLENPDTDIEELIALVKAPDFPTAALIY-GLSGVHDGYRTGRGRVVMRARTHFE 249 Query: 260 EVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318 ++ +G+ I+V E+PYQV K L+E+IAEL+ K+I + +IRDES + V+ R Sbjct: 250 DLEKGNRQAIIVDELPYQVNKRTLLERIAELVNEKKIEGISEIRDESDKSGMRVVIELKR 309 Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378 + P++++ ++F + ++ F +NM L G+ P+ + L +L +L+HRREV+ RR+ F Sbjct: 310 NEVPEVVLNNLFKQTQLQDTFGMNMVALVDGK-PRTLNLKQMLDCFLSHRREVITRRTVF 368 Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIR------------------------------ 408 ++ R IL+GL +A N+DEIIA+I+ Sbjct: 369 ELRKARERGHILEGLAVALSNVDEIIALIKAAPAPADAKRGLMERTWHSALVEEMLARAL 428 Query: 409 ----NEDKPKP---VMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKI 461 D P + + L++ Q AIL LRL+ L LE+ +I +E ++ + I Sbjct: 429 AASYRPDSLAPEFGLSAQGYGLSDAQAQAILELRLQRLTGLEQDKIVTEYREVM---DVI 485 Query: 462 DSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTF--CEVSRADKATLQQAMIEKEP 519 LL+ A + E+ I + D R E++ D +I E Sbjct: 486 TDLLDILANPPRITAIIVEELGAIRHQFDDPRRSEIVLNTAEINIED-------LIAPED 538 Query: 520 ITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGK 571 + V +S+ G+ R+ + A K+ D + A+T D IL S+ G+ Sbjct: 539 MVVTLSHAGYFKRQPLTDYRAQRRGGRGKQATGMKDDDFIDRLFVANTHDYILCFSSRGR 598 Query: 572 AYTL 575 Y L Sbjct: 599 VYWL 602 >gi|331703510|ref|YP_004400197.1| Topoisomerase IV subunit A [Mycoplasma mycoides subsp. capri LC str. 95010] gi|328802065|emb|CBW54219.1| Topoisomerase IV subunit A [Mycoplasma mycoides subsp. capri LC str. 95010] Length = 898 Score = 369 bits (948), Expect = e-100, Method: Compositional matrix adjust. Identities = 237/743 (31%), Positives = 422/743 (56%), Gaps = 41/743 (5%) Query: 24 FALEE----RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 + LEE R+ YA I+ERA+PD+RDG KPV RRI++AM+++ L F +KKSAR+V Sbjct: 10 YPLEELLGNRFSRYAKYIIQERALPDVRDGLKPVQRRILYAMNQLNLTFDKPYKKSARVV 69 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 GEVIGK HPHGD S+YD++VR++Q + PL+ QGN G+IDGDSAAA RYTEAR+T++ Sbjct: 70 GEVIGKYHPHGDSSIYDAMVRMSQWWKVNIPLVDMQGNNGSIDGDSAAAMRYTEARLTKI 129 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 + L+L+ ++++ V F +++ ++EP V PS FPN+L NG +GIA G AT++P HN+ EI Sbjct: 130 SNLLLEDLEKNTVIFSPNFDDSETEPTVLPSYFPNILVNGATGIAAGYATNMPPHNLSEI 189 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 +A + +I NP I+I+++L+ + GPDFPTG II ++++ I E++ G+G + ++W E Sbjct: 190 IDATINIIKNPNITIDQILKIVKGPDFPTGAII-QNKQGIREAFLTGKGKVIISSKWHQE 248 Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319 + IV+ EIPY+V K L++KI ++I +++IRDE+ ++ N Sbjct: 249 KNN-----IVIDEIPYEVVKQDLVKKIGDVIDNNPNLGIKEIRDETDRKGLRIVIELNEK 303 Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379 + + + + +F + + + N N++ + + P+ + L I+K +++H +EV +R+ F Sbjct: 304 ANLETVRKFLFKSTWLSVSYNYN-NIIIVDKQPKQLGLIDIIKAYISHYKEVFIKRTEFN 362 Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDKPKPV--MVSRFSLTENQVDAILNLRL 436 + + R+EI+ GL+ A +DE+I +IR +E++ + +V F+ T NQ AI+++RL Sbjct: 363 LNKANLRLEIVNGLIKALAILDEVIKVIRKSENRIDAINNLVKTFNFTTNQSTAIVDMRL 422 Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496 L + ++ E L+ + +K +LN+ N+I + EVK+ F G +R Sbjct: 423 YRLTSTDVNKLLLEKTELIDKIKKYQEILNNNLVLDNEIISRLEEVKKQF------GIKR 476 Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD---LSALHFKEGDSLKI 553 + E D Q+ +I ++ I + IS G+I+ + ++ ++ LS+ K D Sbjct: 477 KSQVEDLVEDLDVDQKEVIIEKEINLWISKDGYIKVIDNNILNKNELSSFGKKPNDMWIG 536 Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQDIVTAFV---- 607 D ++L+S Y++P + + + G I + N+ I+ AF+ Sbjct: 537 QGVCSNLDHLILVSDQANYYSIPLYKIANSKWKDQGVHINSVATTQPNETIINAFIIKEF 596 Query: 608 YDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTF--LKVSSEEKMKL--VVKVTGDHV 661 +ST LL+VS G +++ ++I K K+F +K+S ++ + ++ + Sbjct: 597 INSTQHLLLVSKNG---LIKRTQISDLETKIFNKSFKIMKISDDDSLVYADLISSKTSYC 653 Query: 662 AVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYN 720 ++ +N + ++I+ IP S KGV+ + KD I + + + I + +Y Sbjct: 654 CIITKNGYAVRYNIEDIPVQSTISKGVKAANLKDDHIISALSLDNNKDV-LIFTNKNNYK 712 Query: 721 RSENDLLG-WLGKRGGVGSLVPK 742 R + +L+ ++ + G+ LV K Sbjct: 713 RLDQNLIPIYIRPKKGIRILVEK 735 >gi|227495518|ref|ZP_03925834.1| DNA topoisomerase (ATP-hydrolyzing) [Actinomyces coleocanis DSM 15436] gi|226831065|gb|EEH63448.1| DNA topoisomerase (ATP-hydrolyzing) [Actinomyces coleocanis DSM 15436] Length = 805 Score = 369 bits (948), Expect = e-100, Method: Compositional matrix adjust. Identities = 215/530 (40%), Positives = 310/530 (58%), Gaps = 20/530 (3%) Query: 13 VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72 V EN+ + + + +L YA S I RA+PD RDG KPV RRI+ MS+MGL Sbjct: 9 VAENIIEIDVSDEMRGSFLEYAYSVIYARALPDARDGCKPVQRRILFQMSQMGLRPEKGH 68 Query: 73 KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132 KS +VGEV+GKLHPHGD ++YD+LVRLAQPF R PL+ G GNFG++D D AA RYT Sbjct: 69 VKSQSVVGEVMGKLHPHGDAAIYDALVRLAQPFNLRLPLVDGHGNFGSLD-DGPAAARYT 127 Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192 EAR+ A ++ +DED VDF Y+ + +P V P+ FP LL NG GIAVGMAT+I Sbjct: 128 EARLAPAAMDLVSNLDEDVVDFVPNYDNRNMQPDVLPAGFPQLLVNGAMGIAVGMATNIA 187 Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252 HN+ E+ A LIDNPE + L+ ++ GPD P GGIIV + I E+Y GRG F+ Sbjct: 188 PHNLGEVVAATCHLIDNPEATTADLMRFVPGPDLPEGGIIV-GLDGIREAYETGRGAFKT 246 Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD--ESAEDVR 310 RA+ VE V +V+TE+PY V R+IEKI E + +K++ + ++ + + VR Sbjct: 247 RAKITVERVTARKQGLVITELPYLVGPERVIEKIKEAVNSKKLQGISNVSNLTDRHHGVR 306 Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370 +V+ KN +P +M +F + +E F +N L GR P + L +L+ ++ HR Sbjct: 307 LVVEVKN-GFNPQAVMSQLFKHTPLEDNFSINAVALVDGR-PMTLGLKQMLEVYVKHRLS 364 Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQ 427 V+ RRS FR+Q R+ +++GLL+A ++ID++IAIIR+ D + ++ F L+E Q Sbjct: 365 VIERRSQFRLQKALDRLHLVEGLLVAIVDIDDVIAIIRSSDDVDSARTRLMDVFELSEIQ 424 Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487 D IL+LRLR L K ++++E LL++ E + +L S + + E+ EV + + Sbjct: 425 ADHILSLRLRRLTKFSRIELETEQAELLSQIEGLRHILGSEQALRTVVRDELVEVSKRLA 484 Query: 488 KSTDLGRRRTTFC-----EVSRADKATLQQAMIEKEPITVVIS-NRGWIR 531 RRT +V A KA I P+ VV++ N G IR Sbjct: 485 TP-----RRTVLLSADPQQVETAGKAAAVPLEIPDAPVQVVLTANGGLIR 529 >gi|289424188|ref|ZP_06425971.1| DNA gyrase, A subunit [Propionibacterium acnes SK187] gi|289427431|ref|ZP_06429144.1| DNA gyrase, A subunit [Propionibacterium acnes J165] gi|289154885|gb|EFD03567.1| DNA gyrase, A subunit [Propionibacterium acnes SK187] gi|289159361|gb|EFD07552.1| DNA gyrase, A subunit [Propionibacterium acnes J165] gi|313792558|gb|EFS40644.1| DNA gyrase, A subunit [Propionibacterium acnes HL110PA1] gi|313803560|gb|EFS44742.1| DNA gyrase, A subunit [Propionibacterium acnes HL110PA2] gi|313806866|gb|EFS45364.1| DNA gyrase, A subunit [Propionibacterium acnes HL087PA2] gi|313814212|gb|EFS51926.1| DNA gyrase, A subunit [Propionibacterium acnes HL025PA1] gi|313815428|gb|EFS53142.1| DNA gyrase, A subunit [Propionibacterium acnes HL059PA1] gi|313817653|gb|EFS55367.1| DNA gyrase, A subunit [Propionibacterium acnes HL046PA2] gi|313821522|gb|EFS59236.1| DNA gyrase, A subunit [Propionibacterium acnes HL036PA1] gi|313824534|gb|EFS62248.1| DNA gyrase, A subunit [Propionibacterium acnes HL036PA2] gi|313826202|gb|EFS63916.1| DNA gyrase, A subunit [Propionibacterium acnes HL063PA1] gi|313828993|gb|EFS66707.1| DNA gyrase, A subunit [Propionibacterium acnes HL063PA2] gi|314916224|gb|EFS80055.1| DNA gyrase, A subunit [Propionibacterium acnes HL005PA4] gi|314926323|gb|EFS90154.1| DNA gyrase, A subunit [Propionibacterium acnes HL036PA3] gi|314930908|gb|EFS94739.1| DNA gyrase, A subunit [Propionibacterium acnes HL067PA1] gi|314955296|gb|EFS99701.1| DNA gyrase, A subunit [Propionibacterium acnes HL027PA1] gi|314959169|gb|EFT03271.1| DNA gyrase, A subunit [Propionibacterium acnes HL002PA1] gi|314961672|gb|EFT05773.1| DNA gyrase, A subunit [Propionibacterium acnes HL002PA2] gi|314969072|gb|EFT13170.1| DNA gyrase, A subunit [Propionibacterium acnes HL037PA1] gi|314980247|gb|EFT24341.1| DNA gyrase, A subunit [Propionibacterium acnes HL072PA2] gi|314987103|gb|EFT31195.1| DNA gyrase, A subunit [Propionibacterium acnes HL005PA2] gi|314990696|gb|EFT34787.1| DNA gyrase, A subunit [Propionibacterium acnes HL005PA3] gi|315079003|gb|EFT51015.1| DNA gyrase, A subunit [Propionibacterium acnes HL053PA2] gi|315081488|gb|EFT53464.1| DNA gyrase, A subunit [Propionibacterium acnes HL078PA1] gi|315083090|gb|EFT55066.1| DNA gyrase, A subunit [Propionibacterium acnes HL027PA2] gi|315086623|gb|EFT58599.1| DNA gyrase, A subunit [Propionibacterium acnes HL002PA3] gi|315088024|gb|EFT60000.1| DNA gyrase, A subunit [Propionibacterium acnes HL072PA1] gi|315099332|gb|EFT71308.1| DNA gyrase, A subunit [Propionibacterium acnes HL059PA2] gi|315109855|gb|EFT81831.1| DNA gyrase, A subunit [Propionibacterium acnes HL030PA2] gi|327333682|gb|EGE75399.1| DNA gyrase, A subunit [Propionibacterium acnes HL096PA3] gi|327444459|gb|EGE91113.1| DNA gyrase, A subunit [Propionibacterium acnes HL013PA2] gi|327457405|gb|EGF04060.1| DNA gyrase, A subunit [Propionibacterium acnes HL092PA1] gi|328757966|gb|EGF71582.1| DNA gyrase, A subunit [Propionibacterium acnes HL020PA1] gi|328758864|gb|EGF72480.1| DNA gyrase, A subunit [Propionibacterium acnes HL025PA2] gi|332674409|gb|AEE71225.1| DNA gyrase subunit A [Propionibacterium acnes 266] Length = 891 Score = 369 bits (948), Expect = e-100, Method: Compositional matrix adjust. Identities = 229/633 (36%), Positives = 356/633 (56%), Gaps = 45/633 (7%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 ++ V +R ++ YL YA+S I RA+PD+RDG KPVHRR+I+AM + G + K + Sbjct: 26 IQPVEIRDEIQNAYLDYAMSVIVGRALPDVRDGLKPVHRRVIYAMYDGGYRPDRGWNKCS 85 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+V+GK HPHGD ++YD+LVRLAQP+ RY L+ GQGNFG+ D AAA RYTE +M Sbjct: 86 RVVGDVMGKYHPHGDSAIYDTLVRLAQPWAMRYKLVQGQGNFGSQGNDGAAAMRYTECKM 145 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 +A +++ +D+D VDF+ Y+ +++EPVV PS+FPNLL NG+SGIAVGMAT+IP+HN+ Sbjct: 146 APLAMEMVRDIDQDTVDFQPNYDNKETEPVVLPSRFPNLLVNGSSGIAVGMATNIPTHNL 205 Query: 197 QEICEAALALIDNPEISIEKLLEY----IIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252 +E+ EA + +P S E+LLE I GPDFP G +IV R+ I ++YR GRG + Sbjct: 206 REVNEAVQWSLAHPNASHEELLEACMERIKGPDFPGGALIV-GRQGIEDAYRTGRGSVTM 264 Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV--R 310 RA +EE +G C+VVTE+PY L KIA+L+ + RI + DIRD+S+ R Sbjct: 265 RAVIDMEEDKKGRQCLVVTELPYMCNPDNLATKIADLVNSGRINGIADIRDDSSARTGQR 324 Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370 +V+ K R P ++M +++ + ++ F NM L + VP+ + LD + W+ H+ E Sbjct: 325 LVIVLK-RDAQPRVVMNNLYKHTALQDTFGCNMLAL-VDNVPRTLRLDQFISYWIDHQME 382 Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQ 427 V+ RR+ +R+ ++ I + L+ A +DE+IA+IR N + + + E Q Sbjct: 383 VIRRRTEYRLAQAEKDAHIQRALVKALDMLDEVIALIRRSPNTEAASTGLQELLDIDEIQ 442 Query: 428 VDAILNLRLRSLRKLEEYQI---KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484 AIL+++LR L LE +I EL+ L+A+ + I L S +Q I+ E+ E+ + Sbjct: 443 ARAILDMQLRRLAALERQKIIDRLEELERLIADYKAI---LASEDRQREIISTELAEIVD 499 Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH 544 + RRT AD ++ I + + V I+ G+ + ++ DL + Sbjct: 500 KYGDE-----RRTRIIA---ADGDFSEEDFIPDDDVVVTITRGGYAKRTRT---DLYRVQ 548 Query: 545 FKEGDSLK---------IALHAHTTDR--ILLLSTDGKAY-----TLPAGNLLSGRGHGE 588 + G ++ +A TT+ IL + G+ Y LP + GH Sbjct: 549 KRGGKGVRGASLRADDEVAQLFTTTNHQWILFFTNMGRVYRTKVWQLPEAGRDARGGHVA 608 Query: 589 AIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKG 621 + + ++T YD LL+ + KG Sbjct: 609 GLLSFLPDEKIAQVMTLRSYDGAEYLLLATRKG 641 >gi|313839632|gb|EFS77346.1| DNA gyrase, A subunit [Propionibacterium acnes HL086PA1] Length = 891 Score = 369 bits (948), Expect = e-100, Method: Compositional matrix adjust. Identities = 229/633 (36%), Positives = 356/633 (56%), Gaps = 45/633 (7%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 ++ V +R ++ YL YA+S I RA+PD+RDG KPVHRR+I+AM + G + K + Sbjct: 26 IQPVEIRDEIQNAYLDYAMSVIVGRALPDVRDGLKPVHRRVIYAMYDGGYRPDRGWNKCS 85 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+V+GK HPHGD ++YD+LVRLAQP+ RY L+ GQGNFG+ D AAA RYTE +M Sbjct: 86 RVVGDVMGKYHPHGDSAIYDTLVRLAQPWAMRYKLVQGQGNFGSQGNDGAAAMRYTECKM 145 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 +A +++ +D+D VDF+ Y+ +++EPVV PS+FPNLL NG+SGIAVGMAT+IP+HN+ Sbjct: 146 APLAMEMVRDIDQDTVDFQPNYDNKETEPVVLPSRFPNLLVNGSSGIAVGMATNIPTHNL 205 Query: 197 QEICEAALALIDNPEISIEKLLEY----IIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252 +E+ EA + +P S E+LLE I GPDFP G +IV R+ I ++YR GRG + Sbjct: 206 REVNEAVQWSLAHPNASHEELLEACMERIKGPDFPGGALIV-GRQGIEDAYRTGRGSVTM 264 Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV--R 310 RA +EE +G C+VVTE+PY L KIA+L+ + RI + DIRD+S+ R Sbjct: 265 RAVIDMEEDKKGRQCLVVTELPYMCNPDNLATKIADLVNSGRINGIADIRDDSSARTGQR 324 Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370 +V+ K R P ++M +++ + ++ F NM L + VP+ + LD + W+ H+ E Sbjct: 325 LVIVLK-RDAQPRVVMNNLYKHTALQDTFGCNMLAL-VDNVPRTLRLDQFISYWIDHQME 382 Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQ 427 V+ RR+ +R+ ++ I + L+ A +DE+IA+IR N + + + E Q Sbjct: 383 VIRRRTEYRLAQAEKDAHIQRALVKALDMLDEVIALIRRSPNTEAASTGLQELLDIDEIQ 442 Query: 428 VDAILNLRLRSLRKLEEYQI---KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484 AIL+++LR L LE +I EL+ L+A+ + I L S +Q I+ E+ E+ + Sbjct: 443 ARAILDMQLRRLAALERQKIIDRLEELERLIADYKAI---LASEDRQREIISTELAEIVD 499 Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH 544 + RRT AD ++ I + + V I+ G+ + ++ DL + Sbjct: 500 KYGDE-----RRTRIIA---ADGDFSEEDFIPDDDVVVTITRGGYAKRTRT---DLYRVQ 548 Query: 545 FKEGDSLK---------IALHAHTTDR--ILLLSTDGKAY-----TLPAGNLLSGRGHGE 588 + G ++ +A TT+ IL + G+ Y LP + GH Sbjct: 549 KRGGKGVRGASLRADDEVAQLFTTTNHQWILFFTNMGRVYRTKVWQLPEAGRDARGGHVA 608 Query: 589 AIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKG 621 + + ++T YD LL+ + KG Sbjct: 609 GLLSFLPDEKIAQVMTLRSYDGAEYLLLATRKG 641 >gi|293192595|ref|ZP_06609549.1| DNA gyrase, A subunit [Actinomyces odontolyticus F0309] gi|292820102|gb|EFF79099.1| DNA gyrase, A subunit [Actinomyces odontolyticus F0309] Length = 823 Score = 369 bits (948), Expect = e-100, Method: Compositional matrix adjust. Identities = 218/581 (37%), Positives = 333/581 (57%), Gaps = 28/581 (4%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 +EN+ + + + +L YA+S I RA+PD RDG KPV RRI+ M +MGL Sbjct: 14 DENITEIDVSDEMRGSFLEYAVSVIYARALPDARDGLKPVQRRILFQMDQMGLRPDKGHV 73 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KS R+VGEV+GKLHPHGD ++Y++LVRLAQPF R PL+ G GNFG++D D AA RYTE Sbjct: 74 KSQRVVGEVMGKLHPHGDSAIYEALVRLAQPFNLRVPLVDGHGNFGSLD-DGPAAARYTE 132 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 ARM A ++ G+DED VDF Y+ + +P V P+ FP LL NG SGIAVGMAT++ Sbjct: 133 ARMAPAALDLVTGLDEDTVDFVPNYDNQFMQPDVLPAAFPQLLVNGASGIAVGMATNVAP 192 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E A+ L+DNP S+ L+ YI GPD P GG+IV E I E+Y GRG F+ R Sbjct: 193 HNLSETIAGAIHLLDNPSASVADLMRYIPGPDLPEGGVIV-GLEGIKEAYETGRGAFKTR 251 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD--ESAEDVRI 311 A+ +E V I+VT++PY V ++IEKI E A R+ + +++ + +R+ Sbjct: 252 AKVQIERVTARKMGIIVTQLPYMVGPEKVIEKIKENANAGRLKGISSVQNLTDRIHGLRL 311 Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371 V+ KN +P+ +++ ++ + +E F +N L G+ P+ + L +L+ +L HR +V Sbjct: 312 VIEVKN-GFNPEAVLQQLYQRTPLEDSFSINAVALVGGQ-PRTLGLKEMLQVFLDHRLDV 369 Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQV 428 RRS FR++ + R+ +++GLLIA L+ID++IAIIR+ D + +++ F L+E Q Sbjct: 370 TTRRSRFRLKKCEDRLHLVEGLLIAILDIDDVIAIIRSSDDAEIARERLMTAFDLSEAQA 429 Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE---- 484 + IL LRLR L K ++++E D LLA+ + +L + + E+REV + Sbjct: 430 NYILELRLRRLTKFSRIELEAERDELLAKIASLREILEDPELLRALVKKELREVSDRLGT 489 Query: 485 ------IFSKSTDLGRRRTTFC------EVSRADKATLQQAMIEKEPITVVISNRGWIRS 532 + S T +G VSR+ K Q I +P VV+S+ G + Sbjct: 490 PRRTLLLASTGTPVGAAAADDAALAALPSVSRSGKGLELQ--IPDDPCVVVLSSSGALAR 547 Query: 533 LKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAY 573 ++ L D ++ L + ++ +++ DG A+ Sbjct: 548 VEGGD-PLEPGPRAASDGWRVQLPSTARSQVAVVTEDGIAH 587 >gi|323359916|ref|YP_004226312.1| type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit [Microbacterium testaceum StLB037] gi|323276287|dbj|BAJ76432.1| type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit [Microbacterium testaceum StLB037] Length = 817 Score = 369 bits (948), Expect = e-100, Method: Compositional matrix adjust. Identities = 204/485 (42%), Positives = 302/485 (62%), Gaps = 9/485 (1%) Query: 7 SNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGL 66 S S++ V E ++ V + ++ +L YA S I RA+PD RDG KPV RRI++ M+EMGL Sbjct: 4 SRSSSPVSERIEDVDVSTEMQGSFLEYAYSVIYSRALPDARDGLKPVQRRILYQMAEMGL 63 Query: 67 DFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSA 126 KSAR+VGEV+GKLHPHGD +YD+LVRLAQ F R PL+ G GNFG++D D Sbjct: 64 RPDRGHVKSARVVGEVMGKLHPHGDAPIYDALVRLAQAFSLRVPLVDGHGNFGSLD-DGP 122 Query: 127 AAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVG 186 AA RYTEAR+ A + + +DED VDF Y+ + +P V P+ FPNLL NG +GIAVG Sbjct: 123 AAPRYTEARLAAAALALTENLDEDVVDFIPNYDGQFQQPEVLPAAFPNLLVNGATGIAVG 182 Query: 187 MATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLG 246 MAT++ HN+ E+ AA L+ NP+ ++E+L+E++ GPD P+GGIIV + I ++Y G Sbjct: 183 MATNMAPHNLIEVVGAATHLLQNPDATVEELMEFVPGPDLPSGGIIV-GLDGIKDAYTNG 241 Query: 247 RGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD--E 304 RG FR RA+ +E +G IV+TE+PY V R+IEKI + + AK++ + D+ D + Sbjct: 242 RGSFRTRAKSSIESLGPRRTGIVITELPYLVGPERVIEKIKDAVQAKKLTGIADVTDLTD 301 Query: 305 SAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364 +R+V+ K DP ++E ++ L+ +E F +N L G+ PQ + L +L+ + Sbjct: 302 RNNGLRLVIGIKT-GFDPKAVLEQLYRLTPLEDSFGINNVALVDGQ-PQTLGLRDMLRVY 359 Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRF 421 + HR V+ RRS +R+ R+ +++GLLIA L+IDE+I +IR+ D + + + F Sbjct: 360 IDHRIRVVTRRSEYRLARKRERLHLVEGLLIAILDIDEVIQVIRSSDDGEQARTKLQEVF 419 Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481 L+ Q + IL LRLR L K ++++E D L AE ++ LL S Q+A E+ Sbjct: 420 DLSHPQAEYILELRLRRLTKFSRIELEAERDQLNAEIAQLVELLGSETLLRQQVAKELDA 479 Query: 482 VKEIF 486 E + Sbjct: 480 AAEAY 484 >gi|295129539|ref|YP_003580202.1| DNA gyrase, A subunit [Propionibacterium acnes SK137] gi|291376682|gb|ADE00537.1| DNA gyrase, A subunit [Propionibacterium acnes SK137] gi|313771056|gb|EFS37022.1| DNA gyrase, A subunit [Propionibacterium acnes HL074PA1] gi|313811779|gb|EFS49493.1| DNA gyrase, A subunit [Propionibacterium acnes HL083PA1] gi|313832313|gb|EFS70027.1| DNA gyrase, A subunit [Propionibacterium acnes HL007PA1] gi|313832773|gb|EFS70487.1| DNA gyrase, A subunit [Propionibacterium acnes HL056PA1] gi|314975207|gb|EFT19302.1| DNA gyrase, A subunit [Propionibacterium acnes HL053PA1] gi|314977621|gb|EFT21716.1| DNA gyrase, A subunit [Propionibacterium acnes HL045PA1] gi|314985194|gb|EFT29286.1| DNA gyrase, A subunit [Propionibacterium acnes HL005PA1] gi|315097153|gb|EFT69129.1| DNA gyrase, A subunit [Propionibacterium acnes HL038PA1] gi|327332509|gb|EGE74244.1| DNA gyrase, A subunit [Propionibacterium acnes HL096PA2] gi|327334568|gb|EGE76279.1| DNA gyrase, A subunit [Propionibacterium acnes HL097PA1] gi|327446713|gb|EGE93367.1| DNA gyrase, A subunit [Propionibacterium acnes HL043PA2] gi|327448845|gb|EGE95499.1| DNA gyrase, A subunit [Propionibacterium acnes HL043PA1] gi|328759821|gb|EGF73412.1| DNA gyrase, A subunit [Propionibacterium acnes HL099PA1] Length = 891 Score = 369 bits (948), Expect = e-100, Method: Compositional matrix adjust. Identities = 229/633 (36%), Positives = 356/633 (56%), Gaps = 45/633 (7%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 ++ V +R ++ YL YA+S I RA+PD+RDG KPVHRR+I+AM + G + K + Sbjct: 26 IQPVEIRDEIQNAYLDYAMSVIVGRALPDVRDGLKPVHRRVIYAMYDGGYRPDRGWNKCS 85 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+V+GK HPHGD ++YD+LVRLAQP+ RY L+ GQGNFG+ D AAA RYTE +M Sbjct: 86 RVVGDVMGKYHPHGDSAIYDTLVRLAQPWAMRYKLVQGQGNFGSQGNDGAAAMRYTECKM 145 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 +A +++ +D+D VDF+ Y+ +++EPVV PS+FPNLL NG+SGIAVGMAT+IP+HN+ Sbjct: 146 APLAMEMVRDIDQDTVDFQPNYDNKETEPVVLPSRFPNLLVNGSSGIAVGMATNIPTHNL 205 Query: 197 QEICEAALALIDNPEISIEKLLEY----IIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252 +E+ EA + +P S E+LLE I GPDFP G +IV R+ I ++YR GRG + Sbjct: 206 REVNEAVQWSLAHPNASHEELLEACMERIKGPDFPGGALIV-GRQGIEDAYRTGRGSVTM 264 Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV--R 310 RA +EE +G C+VVTE+PY L KIA+L+ + RI + DIRD+S+ R Sbjct: 265 RAVIDMEEDKKGRQCLVVTELPYMCNPDNLATKIADLVNSGRINGIADIRDDSSARTGQR 324 Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370 +V+ K R P ++M +++ + ++ F NM L + VP+ + LD + W+ H+ E Sbjct: 325 LVIVLK-RDAQPRVVMNNLYKHTALQDTFGCNMLAL-VDNVPRTLRLDQFISYWIDHQME 382 Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQ 427 V+ RR+ +R+ ++ I + L+ A +DE+IA+IR N + + + E Q Sbjct: 383 VIRRRTEYRLAQAEKDAHIQRALVKALDMLDEVIALIRRSPNTEAASTGLQELLDIDEIQ 442 Query: 428 VDAILNLRLRSLRKLEEYQI---KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484 AIL+++LR L LE +I EL+ L+A+ + I L S +Q I+ E+ E+ + Sbjct: 443 ARAILDMQLRRLAALERQKIIDRLEELERLIADYKAI---LASEDRQREIISTELAEIVD 499 Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH 544 + RRT AD ++ I + + V I+ G+ + ++ DL + Sbjct: 500 KYGDE-----RRTRIIA---ADGDFSEEDFIPDDDVVVTITRGGYAKRTRT---DLYRVQ 548 Query: 545 FKEGDSLK---------IALHAHTTDR--ILLLSTDGKAY-----TLPAGNLLSGRGHGE 588 + G ++ +A TT+ IL + G+ Y LP + GH Sbjct: 549 KRGGKGVRGASLRADDEVAQLFTTTNHQWILFFTNMGRVYRTKVWQLPEAGRDARGGHVA 608 Query: 589 AIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKG 621 + + ++T YD LL+ + KG Sbjct: 609 GLLSFLPDEKIAQVMTLRSYDDAEYLLLATRKG 641 >gi|229549962|ref|ZP_04438687.1| DNA topoisomerase (ATP-hydrolyzing) [Enterococcus faecalis ATCC 29200] gi|229304875|gb|EEN70871.1| DNA topoisomerase (ATP-hydrolyzing) [Enterococcus faecalis ATCC 29200] gi|315158126|gb|EFU02143.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX0312] Length = 823 Score = 369 bits (948), Expect = e-100, Method: Compositional matrix adjust. Identities = 211/618 (34%), Positives = 366/618 (59%), Gaps = 19/618 (3%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 + V+ ++L + +R+ Y+ I+ERA+PD+RDG KPV RRI+ +M++ G F F+K Sbjct: 8 QEVQELTLEEIMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFSMNKDGNTFDKGFRK 67 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 SA+ VG ++G HPHGD S+Y+++VRL+Q + R LI GN G++DGD AA RYTEA Sbjct: 68 SAKSVGNIMGNYHPHGDSSIYEAMVRLSQDWKLREVLIEMHGNNGSMDGDPPAAMRYTEA 127 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 R++Q++ +L+ +D++ VDF +++ + EP V P+K+PNLL NG++GI+ G AT IP+H Sbjct: 128 RLSQLSGELLKDIDKNTVDFVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATEIPTH 187 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 N+ EI + + LID+P S+EKL+EYI GPDFPTGGI+ + + I ++Y GRG +RA Sbjct: 188 NLAEIIDGTVYLIDHPNASLEKLMEYIPGPDFPTGGIL-QGKAEIKKAYETGRGKVILRA 246 Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314 + +E + G IV++EIPY+V K+ L++K+ E+ + K++ + ++RDES ++ Sbjct: 247 KTKIEPLKGGKQQIVISEIPYEVNKATLVKKMDEIRLNKKVDGIAEVRDESDRTGLQIVV 306 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 + ++ + ++ +F ++++ + NM + PQ + L IL+ ++ HR+ V+ Sbjct: 307 ELKKDVNAEGILNYLFKNTELQINYNFNMVAID-NMTPQQVGLKRILESYITHRKSVIIN 365 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDK--PKPVMVSRFSLTENQVDAI 431 R F + +R I+ GL+ A +D++IA IR ++DK K +VS ++ TE Q +AI Sbjct: 366 RCQFELDKARKREHIVAGLIKALSILDKVIATIRGSKDKKDAKKNLVSDYAFTEEQAEAI 425 Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491 + L+L L + ++ E L + ++ ++LN+ K+ ++ + E+REVK+ + Sbjct: 426 VTLQLYRLTNTDITDLQEEAKTLEQQIAELLNILNNEKELFSVMKKELREVKKQY----- 480 Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSVDL-SALHFKEG 548 G R T E + ++ +E + V +++ G+I+ S++S++ + KEG Sbjct: 481 -GNPRLTQIEEEIQEIKIETAVLVAQEDVVVTVTHEGYIKRSSIRSYTASKPEEIGMKEG 539 Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAI-QLLIDLNHNQDIVTA 605 D L A +T D +LL++ G P L L + GE I Q +++L ++ I+ Sbjct: 540 DFLLYAGEVNTLDHLLLVTNKGNMIYRPVHELPDLRWKEIGEHISQTILNLAIDESIIAV 599 Query: 606 FVYD--STCKLLVVSSKG 621 + Y S K V +K Sbjct: 600 YPYKELSPTKTFVFITKA 617 >gi|313765015|gb|EFS36379.1| DNA gyrase, A subunit [Propionibacterium acnes HL013PA1] gi|314917491|gb|EFS81322.1| DNA gyrase, A subunit [Propionibacterium acnes HL050PA1] gi|314921827|gb|EFS85658.1| DNA gyrase, A subunit [Propionibacterium acnes HL050PA3] gi|315102328|gb|EFT74304.1| DNA gyrase, A subunit [Propionibacterium acnes HL046PA1] gi|327454262|gb|EGF00917.1| DNA gyrase, A subunit [Propionibacterium acnes HL087PA3] gi|327456323|gb|EGF02978.1| DNA gyrase, A subunit [Propionibacterium acnes HL083PA2] gi|328756020|gb|EGF69636.1| DNA gyrase, A subunit [Propionibacterium acnes HL087PA1] Length = 891 Score = 369 bits (948), Expect = e-100, Method: Compositional matrix adjust. Identities = 229/633 (36%), Positives = 356/633 (56%), Gaps = 45/633 (7%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 ++ V +R ++ YL YA+S I RA+PD+RDG KPVHRR+I+AM + G + K + Sbjct: 26 IQPVEIRDEIQNAYLDYAMSVIVGRALPDVRDGLKPVHRRVIYAMYDGGYRPDRGWNKCS 85 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+V+GK HPHGD ++YD+LVRLAQP+ RY L+ GQGNFG+ D AAA RYTE +M Sbjct: 86 RVVGDVMGKYHPHGDSAIYDTLVRLAQPWAMRYKLVQGQGNFGSQGNDGAAAMRYTECKM 145 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 +A +++ +D+D VDF+ Y+ +++EPVV PS+FPNLL NG+SGIAVGMAT+IP+HN+ Sbjct: 146 APLAMEMVRDIDQDTVDFQPNYDNKETEPVVLPSRFPNLLVNGSSGIAVGMATNIPTHNL 205 Query: 197 QEICEAALALIDNPEISIEKLLEY----IIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252 +E+ EA + +P S E+LLE I GPDFP G +IV R+ I ++YR GRG + Sbjct: 206 REVNEAVQWSLAHPNASHEELLEACMERIKGPDFPGGALIV-GRQGIEDAYRTGRGSVTM 264 Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV--R 310 RA +EE +G C+VVTE+PY L KIA+L+ + RI + DIRD+S+ R Sbjct: 265 RAVIDMEEDKKGRQCLVVTELPYMCNPDNLATKIADLVNSGRINGIADIRDDSSARTGQR 324 Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370 +V+ K R P ++M +++ + ++ F NM L + VP+ + LD + W+ H+ E Sbjct: 325 LVIVLK-RDAQPRVVMNNLYKHTALQDTFGCNMLAL-VDNVPRTLRLDQFISYWIDHQME 382 Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQ 427 V+ RR+ +R+ ++ I + L+ A +DE+IA+IR N + + + E Q Sbjct: 383 VIRRRTEYRLAQAEKDAHIQRALVKALDMLDEVIALIRRSPNTEAASTGLQELLDIDEIQ 442 Query: 428 VDAILNLRLRSLRKLEEYQI---KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484 AIL+++LR L LE +I EL+ L+A+ + I L S +Q I+ E+ E+ + Sbjct: 443 ARAILDMQLRRLAALERQKIIDRLEELERLIADYKAI---LASEDRQREIISTELAEIVD 499 Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH 544 + RRT AD ++ I + + V I+ G+ + ++ DL + Sbjct: 500 KYGDE-----RRTRIIA---ADGDFSEEDFIPDDDVVVTITRGGYAKRTRT---DLYRVQ 548 Query: 545 FKEGDSLK---------IALHAHTTDR--ILLLSTDGKAY-----TLPAGNLLSGRGHGE 588 + G ++ +A TT+ IL + G+ Y LP + GH Sbjct: 549 KRGGKGVRGASLRADDEVAQLFTTTNHQWILFFTNMGRVYRTKVWQLPEAGRDARGGHVA 608 Query: 589 AIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKG 621 + + ++T YD LL+ + KG Sbjct: 609 GLLSFLPDEKIAQVMTLRSYDGAEYLLLATRKG 641 >gi|319779311|ref|YP_004130224.1| DNA gyrase subunit A [Taylorella equigenitalis MCE9] gi|317109335|gb|ADU92081.1| DNA gyrase subunit A [Taylorella equigenitalis MCE9] Length = 895 Score = 369 bits (948), Expect = e-100, Method: Compositional matrix adjust. Identities = 231/663 (34%), Positives = 357/663 (53%), Gaps = 74/663 (11%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 VSL + YL+Y++S I RA+PD+RDG KPVHRR+++AM E+ + +KKSARIV Sbjct: 11 VSLEEEMRRSYLSYSMSVIVGRALPDVRDGLKPVHRRVLYAMHELSNSWNKPYKKSARIV 70 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGD +VYD++VR+AQ F RY L+ GQGNFG+IDGD AAA RYTE R+ ++ Sbjct: 71 GDVIGKYHPHGDTAVYDTIVRMAQDFSMRYMLVDGQGNFGSIDGDGAAAMRYTEIRLEKI 130 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 + +L ++++ VDF Y+ + EP + P+K P LL NG+SGIAVGMAT+IP HN+ E+ Sbjct: 131 SHEMLADLEKETVDFAPNYDGSEFEPKILPTKIPGLLINGSSGIAVGMATNIPPHNLSEV 190 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 + L + NP+ SI++L+EYI PDFPTGGII + E YR GRG +RA+ +E Sbjct: 191 IDGCLFCLKNPDCSIDELIEYIPAPDFPTGGIIY-GYSGVREGYRTGRGRVIMRAKTHIE 249 Query: 260 EVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318 + +G+ I++ EIPYQV K L EKIA+L+ KRI + DIRDES +D ++ R Sbjct: 250 DFEKGNRQAIIIDEIPYQVNKKTLQEKIADLVNEKRIEGISDIRDESDKDGMRLVIELKR 309 Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378 D+++ ++F L+ ++ F +N+ L G+ P+++ L ++ +L HRREV+ RR+ F Sbjct: 310 GEVADVVLNNLFKLTQLQDTFGMNLVALVNGQ-PKLLNLKELVVYFLQHRREVITRRTVF 368 Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSR--------------- 420 ++ L+GL +A NIDE I II+ P ++SR Sbjct: 369 ELRKAREEGHKLEGLAVALANIDEFIQIIKTSASPDEALERLMSRGWDSSLVKSLLSRVD 428 Query: 421 ---------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDN 453 + L+ +Q ILN+ LR L LE+ +I S + Sbjct: 429 EDKALGGFKAYRPEGLPEEYGLRNDGLYYLSYDQTREILNMNLRRLTGLEQEKIISSYEA 488 Query: 454 LLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA 513 + + +L+ ++ I E+ +K ++ + R + E + + T + Sbjct: 489 AMDAITDLLDILSKPERITAIIGEELIAIKNEYT----IKDARRSQIEYNAVEFET--ED 542 Query: 514 MIEKEPITVVISNRGWIRS--LKSHSVD------LSALHFKEGDSLKIALHAHTTDRILL 565 +I + V +SN G+I+S L + A K+ D ++ A+T D +L Sbjct: 543 LITPMDMVVTLSNEGYIKSQPLSEYQAQNRGGKGKKATEMKDNDFVQQLFIANTHDYVLC 602 Query: 566 LSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQDIVTA----------FVYDSTCK 613 S+ G+ + L + G G I L +L N+ I F++ +T K Sbjct: 603 FSSLGRLHRLKVWEVPQGGRNSKGRPIVNLFELQENEKITVVLPIKQFSDDQFIFLATAK 662 Query: 614 LLV 616 +V Sbjct: 663 GVV 665 >gi|315160387|gb|EFU04404.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX0645] Length = 823 Score = 369 bits (948), Expect = e-100, Method: Compositional matrix adjust. Identities = 211/618 (34%), Positives = 365/618 (59%), Gaps = 19/618 (3%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 + V+ ++L + +R+ Y+ I+ERA+PD+RDG KPV RRI+ +M++ G F F+K Sbjct: 8 QEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFSMNKDGNTFDKGFRK 67 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 SA+ VG ++G HPHGD S+Y ++VRL+Q + R LI GN G++DGD AA RYTEA Sbjct: 68 SAKSVGNIMGNYHPHGDSSIYKAMVRLSQDWKLREVLIEMHGNNGSMDGDPPAAMRYTEA 127 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 R++Q++ +L+ +D++ VDF +++ + EP V P+K+PNLL NG++GI+ G AT IP+H Sbjct: 128 RLSQLSGELLKDIDKNTVDFVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATEIPTH 187 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 N+ EI + + LID+P S+EKL+EYI GPDFPTGGI+ + + I ++Y GRG +RA Sbjct: 188 NLAEIIDGTVYLIDHPNASLEKLMEYIPGPDFPTGGIL-QGKAEIKKAYETGRGKVILRA 246 Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314 + +E + G IV++EIPY+V K+ L++K+ E+ + K++ + ++RDES ++ Sbjct: 247 KTKIEPLKGGKQQIVISEIPYEVNKATLVKKMDEIRLNKKVDGIAEVRDESDRTGLQIVV 306 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 + ++ + ++ +F ++++ + NM + PQ + L IL+ ++ HR+ V+ Sbjct: 307 ELKKDVNAEGILNYLFKNTELQINYNFNMVAID-NMTPQQVGLKRILESYITHRKSVIIN 365 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDK--PKPVMVSRFSLTENQVDAI 431 R F + +R I+ GL+ A +D++IA IR ++DK K +VS ++ TE Q +AI Sbjct: 366 RCQFELDKARKREHIVAGLIKALSILDKVIATIRGSKDKKDAKKNLVSDYAFTEEQAEAI 425 Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491 + L+L L + ++ E L + ++ ++LN+ K+ ++ + E+REVK+ + Sbjct: 426 VTLQLYRLTNTDITDLQEEAKTLEQQIAELLNILNNEKELFSVMKKELREVKKQY----- 480 Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSVDL-SALHFKEG 548 G R T E + ++ +E + V +++ G+I+ S++S++ + KEG Sbjct: 481 -GNPRLTQIEEEIQEIKIETAVLVAQEDVVVTVTHEGYIKRSSIRSYTASKPEEIGMKEG 539 Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAI-QLLIDLNHNQDIVTA 605 D L A +T D +LL++ G P L L + GE I Q +++L ++ I+ Sbjct: 540 DFLLYAGEVNTLDHLLLVTNKGNMIYRPVHELPDLRWKEIGEHISQTILNLAIDESIIAV 599 Query: 606 FVYD--STCKLLVVSSKG 621 + Y S K V +K Sbjct: 600 YPYKELSPTKTFVFITKA 617 >gi|254519461|ref|ZP_05131517.1| DNA topoisomerase IV subunit A [Clostridium sp. 7_2_43FAA] gi|226913210|gb|EEH98411.1| DNA topoisomerase IV subunit A [Clostridium sp. 7_2_43FAA] Length = 968 Score = 369 bits (948), Expect = e-100, Method: Compositional matrix adjust. Identities = 213/586 (36%), Positives = 345/586 (58%), Gaps = 23/586 (3%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 + N+ V L A+ + YL YA+ K+RA+PD+RDG KPVHRRI++ ++ + Sbjct: 11 DNNIIRVPLEEAMPDNYLPYAIEVAKDRALPDVRDGLKPVHRRILYGAYQLKAFPDRPYY 70 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSARIVG+++GK HPHGD SVYD++V +AQ F R LI G GN+G++DGD AAA RYTE Sbjct: 71 KSARIVGDILGKYHPHGDTSVYDAMVIMAQNFSTRETLIDGHGNWGSMDGDGAAAMRYTE 130 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 AR+ +A +L+ +D++ VD Y++ + EP V PS++PNLL NGT GIAVG+AT+IP Sbjct: 131 ARLAPIAMEMLRDIDKETVDMVPNYSDSEMEPKVLPSRYPNLLVNGTFGIAVGLATNIPP 190 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E+ + LA IDN EI+ ++L+ Y+ GPD PTGGI++ + SI+ +Y G G +R Sbjct: 191 HNLGEVTDGVLAYIDNSEITTKELMNYVKGPDLPTGGILI-GQNSILAAYETGEGKVTLR 249 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR----IPLLEDIRDESAED- 308 A+ +E + G IV+TE P++ K++L++ I+E+ KR + + DIRDES Sbjct: 250 AKTNIERLENGRVGIVITEFPFRRNKAKLLQTISEMTGDKRHAKALESIVDIRDESDRSG 309 Query: 309 VRIVLFPKNRSLD--PDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366 VR V+ + + + D +++ +F +D++ NM L+ G+ PQ M L I+K ++ Sbjct: 310 VRAVIELRKAADEEVADKVLKYLFKRTDLQCNLSFNMVALADGK-PQTMGLKTIIKHYVN 368 Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSL 423 H++E++ RR+ + ++R I++G + A +DEII IR K ++S+F Sbjct: 369 HQKEIVTRRTIKELSIAEKRFHIVEGFIKAIDVLDEIIKTIRESKSKKDAGVNLISKFGF 428 Query: 424 TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483 TE Q +AIL L L L LE + E L +K+ +L+ K+ + E++EV Sbjct: 429 TEIQAEAILELMLYRLTGLEIKVFQKEYAELEKTIKKLKKILSEEKELLKVVKNELKEVS 488 Query: 484 EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD-LSA 542 + + R+T+ + K +++ +I E + + +S G+I+ + + + L+A Sbjct: 489 DKYRNP-----RKTSIIKDDNEAKIDVEE-LIVVEDVMITLSKDGFIKRIPLKTFNRLNA 542 Query: 543 ----LHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR 584 + ++EGD LK ++TT+ ILL + G Y N+ G+ Sbjct: 543 KAEDIEYREGDELKFLFKSNTTESILLFTNKGNMYQTKGINIPEGK 588 >gi|50841504|ref|YP_054731.1| DNA gyrase subunit A [Propionibacterium acnes KPA171202] gi|50839106|gb|AAT81773.1| DNA gyrase subunit A [Propionibacterium acnes KPA171202] gi|315107488|gb|EFT79464.1| DNA gyrase, A subunit [Propionibacterium acnes HL030PA1] Length = 891 Score = 369 bits (947), Expect = e-100, Method: Compositional matrix adjust. Identities = 231/633 (36%), Positives = 357/633 (56%), Gaps = 45/633 (7%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 ++ V +R ++ YL YA+S I RA+PD+RDG KPVHRR+I+AM + G + K + Sbjct: 26 IQPVEIRDEIQNAYLDYAMSVIVGRALPDVRDGLKPVHRRVIYAMYDGGYRPDRGWNKCS 85 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+V+GK HPHGD ++YD+LVRLAQP+ RY L+ GQGNFG+ D AAA RYTE +M Sbjct: 86 RVVGDVMGKYHPHGDSAIYDTLVRLAQPWAMRYKLVQGQGNFGSQGNDGAAAMRYTECKM 145 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 +A +++ +D+D VDF+ Y+ +++EPVV PS+FPNLL NG+SGIAVGMAT+IP+HN+ Sbjct: 146 APLAMEMVRDIDQDTVDFQPNYDNKETEPVVLPSRFPNLLVNGSSGIAVGMATNIPTHNL 205 Query: 197 QEICEAALALIDNPEISIEKLLEY----IIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252 +E+ EA + +P S E+LLE I GPDFP G +IV R+ I ++YR GRG + Sbjct: 206 REVNEAVQWSLAHPNASHEELLEACMERIKGPDFPGGALIV-GRQGIEDAYRTGRGSVTM 264 Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV--R 310 RA +EE +G C+VVTE+PY L KIA+L+ + RI + DIRD+S+ R Sbjct: 265 RAVIDMEEDKKGRQCLVVTELPYMCNPDNLATKIADLVNSGRINGIADIRDDSSARTGQR 324 Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370 +V+ K R P ++M +++ + ++ F NM L + VP+ + LD + W+ H+ E Sbjct: 325 LVIVLK-RDAQPRVVMNNLYKHTALQDTFGCNMLAL-VDNVPRTLRLDQFISYWIDHQME 382 Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQ 427 V+ RR+ +R+ ++ I + L+ A +DE+IA+IR N + + + E Q Sbjct: 383 VIRRRTEYRLAQAEKDAHIQRALVKALDMLDEVIALIRRSPNTEAASTGLQELLDIDEIQ 442 Query: 428 VDAILNLRLRSLRKLEEYQI---KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484 AIL+++LR L LE +I EL+ L+A+ + I L S +Q I+ E+ E+ + Sbjct: 443 ARAILDMQLRRLAALERQKIIDRLEELERLIADYKAI---LASEDRQREIISTELAEIVD 499 Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH 544 + RRT AD ++ I + + V I+ G+ + ++ DL + Sbjct: 500 KYGDE-----RRTRIIA---ADGDFSEEDFIPDDDVVVTITRGGYAKRTRT---DLYRVQ 548 Query: 545 FKEGDSLKIA-LHAH--------TTDR--ILLLSTDGKAY-----TLPAGNLLSGRGHGE 588 + G ++ A L A TT+ IL + G+ Y LP + GH Sbjct: 549 KRGGKGVRGASLRADDEMAQLFTTTNHQWILFFTNMGRVYRTKVWQLPEAGRDARGGHVA 608 Query: 589 AIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKG 621 + + ++T YD LL+ + KG Sbjct: 609 GLLSFLPDEKIAQVMTLRSYDGAEYLLLATRKG 641 >gi|238061920|ref|ZP_04606629.1| DBA gyrase A subunit gyrA [Micromonospora sp. ATCC 39149] gi|237883731|gb|EEP72559.1| DBA gyrase A subunit gyrA [Micromonospora sp. ATCC 39149] Length = 840 Score = 369 bits (947), Expect = e-99, Method: Compositional matrix adjust. Identities = 221/597 (37%), Positives = 344/597 (57%), Gaps = 33/597 (5%) Query: 12 LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71 + + ++ V L ++ YL YA+S I RA+PD+RDG KPVHR+I++AM + G Sbjct: 23 VAHDRIEPVGLEVEMQRSYLDYAMSVIVGRALPDVRDGLKPVHRKILYAMFDSGYRPDRG 82 Query: 72 FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131 + K +R+VG+V+G+ HPHGD ++YD+LVR+AQP+ RYPL+ G GNFG+ D AAA RY Sbjct: 83 YVKCSRVVGDVMGQFHPHGDSAIYDALVRMAQPWSLRYPLVDGNGNFGSPGNDPAAAMRY 142 Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191 TE ++ +A +L+ +DED VD +D Y+ EP + PS+ PNLL NG+ GIAVGMAT I Sbjct: 143 TECKLDPLAMEMLRDIDEDTVDLQDNYDGRAKEPTILPSRIPNLLINGSEGIAVGMATKI 202 Query: 192 PSHNVQEICEAALALIDNPEI----SIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247 P HN++EI A ++NP++ +++ L+E + GPDFPT G+IV + ++I ++YR GR Sbjct: 203 PPHNLREIGAAVQWCLENPDVDEATTLDALIEIVKGPDFPTHGLIVGT-QAIQDAYRTGR 261 Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA- 306 G R+RA VEE RG C+VV+E+PYQV L E+IAELI ++ + DIRDES+ Sbjct: 262 GSIRMRAVVEVEEDKRGRPCLVVSELPYQVNPDNLAERIAELIKEGKLGGIADIRDESSG 321 Query: 307 -EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365 +RIVL K R +++ +++ + ++ F NM L G VP+ + L ++ ++ Sbjct: 322 RTGMRIVLVLK-RDAVAKVVLNNLYKHTQLQETFGANMLALVDG-VPRTLNLAQFIRYYV 379 Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFS 422 H+ EV+ RR++FR++ + R IL+GL A +DE+IA+IR + + ++ Sbjct: 380 EHQIEVIRRRTAFRLRKAEERAHILRGLSKALDALDEVIALIRRSPTVEDARQGLIRLLE 439 Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482 + E Q AIL+++LR L LE +I +L L E + +L ++Q +I E E+ Sbjct: 440 IDEIQATAILDMQLRRLAALERQRILDDLAKLEVEIADLKDILAKPERQ-RRIVSE--EL 496 Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLK 534 EI +K D RRT D + +I +E + V I+ G+ RS + Sbjct: 497 GEIVAKWGD--ERRTKIVPF---DGEVSMEDLIAREDVVVTITRTGYAKRTKVDLYRSQR 551 Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGH 586 +S ++ D + T D +L + G KAY LP + ++ H Sbjct: 552 RGGKGVSGATLRQDDIVSHFFVCSTHDWMLFFTNKGRVYRAKAYELPEASRVAKGQH 608 >gi|324999888|ref|ZP_08121000.1| DNA gyrase subunit A [Pseudonocardia sp. P1] Length = 836 Score = 369 bits (947), Expect = e-99, Method: Compositional matrix adjust. Identities = 230/668 (34%), Positives = 370/668 (55%), Gaps = 39/668 (5%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 V+ V ++ ++ Y+ YA+S I RA+P + DG KPVHRR++++M E G +F K A Sbjct: 21 VEPVDIQQEMQRSYIDYAMSVIVGRALPLVEDGLKPVHRRVLYSMGENGFRPDRSFVKCA 80 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+V+G HPHGD ++YD+LVRLAQP+ RYPLI+GQGNFG+ D AAA RYTE R+ Sbjct: 81 RVVGDVMGNYHPHGDSAIYDALVRLAQPWSMRYPLITGQGNFGSRGNDPAAAMRYTECRL 140 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 + +A +LQ ++E+ VDF D Y+ + EPVV PS+ PNLL NG+SGIAVGMAT+IP HN+ Sbjct: 141 SPLAMAMLQDIEEETVDFLDNYDGKTQEPVVLPSRVPNLLINGSSGIAVGMATNIPPHNL 200 Query: 197 QEICEAALALIDNPEIS----IEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252 +E+ ++NP+ + +E L+E I GPDFPT G+IV R+ I +YR GRG R+ Sbjct: 201 REVGAGVAWCLENPDATDDELLEALMERIKGPDFPTHGLIV-GRDGIESAYRTGRGSIRM 259 Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV--R 310 RA VE+ +G +VVTE+PY V LIE IA ++ +I + +I DES++ + R Sbjct: 260 RAVVEVEDDAKGRTTLVVTELPYMVNPDNLIESIATMVRDGKIAGISEIVDESSDRIGMR 319 Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370 IV+ K R +++ +++ + ++ F NM + G VP+ + LD I++ ++ H+ E Sbjct: 320 IVVTLK-RDAVAKVVLNNLYKHTQLQHSFGANMLSIVDG-VPRTLRLDQIVRHYVRHQIE 377 Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQ 427 V+ RR+ +R++ + R IL+GL+ A +DE+IA+IR D + ++ ++ E Q Sbjct: 378 VIVRRTRYRLRKAEERAHILRGLVKALDALDEVIALIRASATVDVARAGLIDLLTVDEIQ 437 Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487 AIL+++LR L LE +I EL + E + +L ++Q + E+ E+ E Sbjct: 438 AQAILDMQLRRLAALERQKIVDELAEIEREIADYEDILTRPERQREIVRDELAEIVEQHG 497 Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHSVD 539 RRT D + +I E + V I+ G+ R+ K Sbjct: 498 DD-----RRTRIVGY---DGDVTDEDLIAVEDVVVTITRTGYAKRTKTDLYRAQKRGGKG 549 Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQLLI 594 + K+ D + T D +L + G KAY LP N + G+ + L+ Sbjct: 550 VQGAQLKQDDIVNHFFVCSTHDWMLFFTNRGRVYRLKAYELPEANRTA---RGQHLANLL 606 Query: 595 DLNHNQDIVTAF-VYDSTCKLLVVSSKGNAFIVEE--SEIIANTRKGKTFLKVSSEEKMK 651 L +++I + D + +V + N + + ++ +N G + + ++++ Sbjct: 607 ALQPDEEIAQVMQIKDYQARPYLVLATRNGLVKKSRLTDFDSNRTGGLIGINLRDDDELV 666 Query: 652 LVVKVTGD 659 V +GD Sbjct: 667 GAVLCSGD 674 >gi|325269857|ref|ZP_08136467.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Prevotella multiformis DSM 16608] gi|324987830|gb|EGC19803.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Prevotella multiformis DSM 16608] Length = 848 Score = 369 bits (947), Expect = e-99, Method: Compositional matrix adjust. Identities = 226/679 (33%), Positives = 373/679 (54%), Gaps = 41/679 (6%) Query: 6 ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65 + + T+ ++ + +++ ++ Y+ Y++S I RA+PD+RDGFKPVHRRI+ M +G Sbjct: 1 MDENQTIDQDRIMKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILFGMRGIG 60 Query: 66 LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125 +KK AR+VGEV+GK HPHGD SVY +LVR+ Q + RY L+ GQGNFG++DGDS Sbjct: 61 NFSNQPYKKCARVVGEVLGKYHPHGDSSVYGALVRMGQEWNMRYKLVDGQGNFGSVDGDS 120 Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185 AAA RYTE R++++ E ++ +++D VD + +++ EP V P+K PNLL NG +GIAV Sbjct: 121 AAAMRYTECRLSKMGEHVMDDIEKDTVDMVNNFDDTLREPAVMPTKIPNLLVNGGNGIAV 180 Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245 GMAT+IP+HN+ E+ + A IDNP+IS + L+E+I PDFPTG I + + ++Y Sbjct: 181 GMATNIPTHNLGEVIDGCCAYIDNPDISTDGLMEFIPAPDFPTGAYIY-GLQGVKDAYET 239 Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305 GRG +RA+ +E IVVTEIPY V K +LIE IA+L+ +I + ++ DE+ Sbjct: 240 GRGRVVMRAKAEIES-DESHDKIVVTEIPYGVNKQQLIEYIADLVKEGKIEGISNVNDET 298 Query: 306 A-EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364 + +RIV+ K R + ++++ +F ++ +++ F +N L GR P+++ L +K + Sbjct: 299 GRQGMRIVVDVK-RDANANVILNKLFKMTALQSSFSVNCIALVGGR-PRLLSLRECIKYF 356 Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRF 421 + HR +V RR+ F ++ R IL+ L+ A NIDE++ +IR P + RF Sbjct: 357 VEHRHDVTIRRARFDLKKAQERAHILEALIKACDNIDEVVHLIRASKTPSEAQKNLEERF 416 Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481 E Q AI+++RL L L Q+ E + L+ + + +L++ ++ + E++E Sbjct: 417 GFDELQSKAIVDMRLSQLTGLRLDQLHQEFEELMQTIKDLQEILDNPERCKEVMKAELQE 476 Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR-----SLKSH 536 VKE + RRT E+ + + +P+ + IS+ G+I+ K Sbjct: 477 VKEKYGDD-----RRT---EIIPDEHEFNAEDFYPNDPVVITISHLGYIKRTPLADFKEQ 528 Query: 537 S---VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQ 591 + V ++ D + A +L + G+ Y + ++ G G AIQ Sbjct: 529 ARGGVGSKGARTRDKDFTEYIYPATMHQTMLFFTRKGRCYWMKCYDIPEGDKNSKGRAIQ 588 Query: 592 LLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG---KTFLKVSSEE 648 ++ L+ D V AF L + N ++ ++ T++G KT L+ S Sbjct: 589 NMLSLDPG-DSVNAF--------LRIRGLDNEEFLDSHFVVFATKQGIVKKTSLRAYSRP 639 Query: 649 KMKLVVKVT---GDHVAVV 664 + V+ + GD V V Sbjct: 640 RTNGVIAININEGDEVVDV 658 >gi|237653702|ref|YP_002890016.1| DNA gyrase subunit A [Thauera sp. MZ1T] gi|237624949|gb|ACR01639.1| DNA gyrase, A subunit [Thauera sp. MZ1T] Length = 883 Score = 369 bits (947), Expect = e-99, Method: Compositional matrix adjust. Identities = 253/745 (33%), Positives = 379/745 (50%), Gaps = 95/745 (12%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 +SL + YL YA+S I RA+PD RDG KPVHRR++ AM E+ D+ A+KKSARIV Sbjct: 11 ISLEEEMRHSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMHELSNDWNRAYKKSARIV 70 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGD +VYD++VR+AQ F RY L+ GQGNFG++DGD+AAA RYTE RM ++ Sbjct: 71 GDVIGKYHPHGDTAVYDTIVRMAQDFSLRYMLVDGQGNFGSVDGDNAAAMRYTEIRMARI 130 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 +L +D++ VDF Y+ + EP+V P++ PNLL NG++GIAVGMAT+IP HN+ EI Sbjct: 131 GHELLADIDKETVDFGPNYDGSEKEPLVLPARIPNLLINGSAGIAVGMATNIPPHNLGEI 190 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 +A L L+ P+ IE L++ + PDFPT G+I + E YR GRG +RAR E Sbjct: 191 VDACLKLLAEPDTDIEALIDIVQAPDFPTAGLIY-GLAGVREGYRTGRGRVIMRARTHFE 249 Query: 260 EVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318 +G+ I+V E+PYQV K L E++AEL+ K+I + +IRDES + ++ R Sbjct: 250 PIGKTDRQAIIVDELPYQVNKRTLQERMAELVNEKKIEGISEIRDESDKSGMRLVIELKR 309 Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378 P++++ +F + ++ F +NM L G+ P+++ L +L +L HRREV+ RR+ F Sbjct: 310 GEMPEVVLNKLFKHTQLQDSFGMNMVALVDGK-PRLLNLKQMLVCFLEHRREVVTRRTIF 368 Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV----------------MVSR-- 420 ++ R IL+GL +A N+DEIIA+I+ P M+SR Sbjct: 369 ELRKARDRGHILEGLAVALSNVDEIIALIKAAPTPADAKRELMAREWRSALVEEMLSRAL 428 Query: 421 -------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKI 461 + L+E Q AIL LRL+ L LE+ +I E ++ + I Sbjct: 429 ADSYRPEGLDPQYGLQAQGYRLSEAQAQAILELRLQRLTGLEQDKIVGEYREVM---DVI 485 Query: 462 DSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTF--CEVSRADKATLQQAMIEKEP 519 LL+ + A + E+ I ++ D R E++ D +I E Sbjct: 486 TDLLDILARPERITAIIVEELGAIRNQFGDPRRSELVMNTAEINIED-------LITPED 538 Query: 520 ITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGK 571 + V +S+ G+ R+ + A K+ D + A+T D +L S G+ Sbjct: 539 MVVTLSHTGYFKRQPLADYRAQRRGGRGKQATSMKDEDFIDHLFVANTHDTVLCFSNRGR 598 Query: 572 AYTLPAGNLLSG--RGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIV 626 Y L + G G+ I L L + I +D + + +S+G Sbjct: 599 CYWLKVYEVPEGTRNSRGKPIVNLFPLVEGEKITAVLPIKEFDEEHFVFMATSEGTV--- 655 Query: 627 EESEIIANTRKGKTFLKVSSEEKMKLVVKVT---GDH---VAVVGENRKLLIFS------ 674 KT L S + ++ V GDH VA+ +++FS Sbjct: 656 -----------KKTALTAFSNPRKAGIIAVNLDDGDHLIGVAITDGQCDVMLFSDAGKAV 704 Query: 675 ----IDQIPEMSRGKGVRLQSYKDG 695 D P +GVR + +DG Sbjct: 705 RFAETDVRPMGRDARGVRGMTLEDG 729 >gi|161870257|ref|YP_001599427.1| DNA gyrase subunit A [Neisseria meningitidis 053442] gi|161595810|gb|ABX73470.1| DNA gyrase subunit A [Neisseria meningitidis 053442] Length = 916 Score = 369 bits (947), Expect = e-99, Method: Compositional matrix adjust. Identities = 228/628 (36%), Positives = 352/628 (56%), Gaps = 65/628 (10%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 VSL + + YL YA+S I RA+PD+RDG KPVHRR+++AM E+ ++ AA+KKSARIV Sbjct: 19 VSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIV 78 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGD +VYD++VR+AQ F RY LI GQGNFG++DG +AAA RYTE RM ++ Sbjct: 79 GDVIGKYHPHGDIAVYDTIVRMAQNFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMAKI 138 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 + +L ++E+ V+F Y+ + EP+V P++FP LL NG+SGIAVGMAT+IP HN+ + Sbjct: 139 SHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGSSGIAVGMATNIPPHNLSDT 198 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 A L L+D P+ I++L++ I PDFPTG I + E Y+ GRG +R + +E Sbjct: 199 VNACLRLLDAPDTEIDELIDIIQAPDFPTGATIY-GLSGVREGYKTGRGRVVMRGKTHIE 257 Query: 260 EVGRGS--WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317 +GR IV+ EIPYQV K++L+EKI +L+ K + + ++RDES + V+ Sbjct: 258 PIGRNGEREAIVIDEIPYQVNKAKLVEKIGDLVREKTLEGISELRDESDKSGMRVVIELK 317 Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377 R+ + ++++ ++ L+ ++ F +NM VL G+ P+++ L IL E+L HRREV+ RR+ Sbjct: 318 RNENAEVVLNQLYKLTPLQDSFGINMVVLVDGQ-PRLLNLKQILSEFLRHRREVVTRRTL 376 Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN-----EDKPKPV-----------MVSR- 420 FR++ I +G +A NID II +I+ E K K + M++R Sbjct: 377 FRLKKARHEGHIAEGKAVALSNIDAIIKLIKESPNAAEAKDKLLAHPWRSSLVEEMLTRS 436 Query: 421 ----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458 + L+E Q DAIL + LR+L L++ +I NL+ + Sbjct: 437 GLDLEMMRPEGLAANIGLKEQGYYLSEIQADAILRMSLRNLTGLDQEEIVESYKNLMGKI 496 Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518 +L+ ++ I E+ E+K T+ G R + D A + +I + Sbjct: 497 IDFVDILSKPERITQIIRDELEEIK------TNYGDERRSEINPFGGDIA--DEDLIPQR 548 Query: 519 PITVVISNRGWIRSLKSHSVDL--------SALHFKEGDSLKIALHAHTTDRILLLSTDG 570 + V +++ G+I++ + A K+ D ++ A+T D ++ + G Sbjct: 549 EMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDYLMCFTNLG 608 Query: 571 KA-----YTLPAGNLLS-GRGHGEAIQL 592 K Y LP G S GR IQL Sbjct: 609 KCHWIKVYKLPEGGRNSRGRPINNVIQL 636 >gi|172057603|ref|YP_001814063.1| DNA topoisomerase IV, A subunit [Exiguobacterium sibiricum 255-15] gi|171990124|gb|ACB61046.1| DNA topoisomerase IV, A subunit [Exiguobacterium sibiricum 255-15] Length = 801 Score = 369 bits (947), Expect = 1e-99, Method: Compositional matrix adjust. Identities = 232/717 (32%), Positives = 395/717 (55%), Gaps = 24/717 (3%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 +N+ +SL + +R+ Y+ I++RA+PD RDG KPV RRI++AM G F A++K Sbjct: 5 QNILNLSLEQVVGDRFGRYSKYIIQDRALPDARDGLKPVQRRILYAMHTEGNMFDRAYRK 64 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 SA+ VG VIG HPHGD SVY+++VRL+Q + RYPLI QGN G+IDGDSAAA RYTEA Sbjct: 65 SAKTVGVVIGNYHPHGDSSVYEAMVRLSQEWKLRYPLIDMQGNNGSIDGDSAAAMRYTEA 124 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 R+++V+ LIL+G+++ VD+ +++ EP+V PS PNLL NG++GI+ G AT IP H Sbjct: 125 RLSKVSSLILEGINKQTVDYTLNFDDTTEEPLVLPSLLPNLLMNGSTGISAGYATEIPPH 184 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 + E+ +AA+ I +++ LL ++ GPDFPTGG +V+ + I +++ GRG +R+ Sbjct: 185 HAGEVLDAAIGRISGTVHTVDDLLTHMQGPDFPTGG-VVQGLDGIKKAFETGRGKVIIRS 243 Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314 R +E + G I++TE+PY+V K+ L++++ EL + +++ + ++RDE+ D V+ Sbjct: 244 RATIETLRGGRQQIIITELPYEVNKANLVKRMEELRLDRKVEGVAEVRDETDRDGLRVVI 303 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 + D + ++ +D++ + NM V R P+ M + +L +L+H ++V+ R Sbjct: 304 ELKKEADAEGVLHFYLKQTDLQIAYNYNM-VAIHERTPRQMGVLALLDAYLSHVKDVVIR 362 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAI 431 R+SF ++ RR E++ L+ A +DE +A+IR N+ + K ++ RFS T+ Q +A+ Sbjct: 363 RTSFDLEQAKRRQEVVSALMTAISVLDETLALIRSASNKSEAKDKLIERFSFTDRQAEAV 422 Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491 + L+L L + +++ E L E +++ +LN K + I E+ +KE + Sbjct: 423 VMLQLYRLTNTDIVELQDEAAKLEKEIARLEKILNDEKTRNRLIIKELTVLKEQVADK-- 480 Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSVDLSALHFKEGD 549 RR T EV T + MI E V +S G+I+ S++S KE D Sbjct: 481 --RRSTVEAEVEELKLKT--EVMIAVEETMVFVSKNGYIKRSSMRSFGATNDLPEMKEQD 536 Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAFV 607 L A TTD +++ + G +P L + G+ + L+ L+ I++ + Sbjct: 537 RLLYQGQAMTTDHVIVWTVQGNYLLIPVHQLPDTKWKDGGQHVANLVPLDPGDRILSVDL 596 Query: 608 ---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKV---SSEEKMKLVVKVTGDHV 661 +D T L V+ +G + S+ A RK K V + +E + + + + Sbjct: 597 VRTFDETSHCLFVTRQGMVKRSKLSDYNAQ-RKSKPLQGVRLRADDEVLYAKISTGQEQL 655 Query: 662 AVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGG-ISDVICFKICEGLTWIDSAG 716 + ++ L F+ D +P + R GV+ + +D ++ I FK + + G Sbjct: 656 FLTTQHGFGLWFTEDDVPVVGVRAAGVKAINLRDQDVVAGAIGFKQAPNIVLLTQRG 712 >gi|323465563|gb|ADX69250.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lactobacillus helveticus H10] Length = 809 Score = 369 bits (947), Expect = 1e-99, Method: Compositional matrix adjust. Identities = 214/603 (35%), Positives = 348/603 (57%), Gaps = 38/603 (6%) Query: 26 LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85 + +L YA+S I RA+PD+RDG KPV RRI++ MSE+G+ +KKSARIVGEV+GK Sbjct: 2 MRSSFLDYAMSVIVARALPDVRDGLKPVQRRILYGMSELGVTPDKQYKKSARIVGEVMGK 61 Query: 86 LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145 HPHGD S+Y ++ +AQ F RY L+ G GNFG++DGD AA RYTEARM+++A +L+ Sbjct: 62 FHPHGDSSIYLAMAHMAQDFSYRYMLVDGHGNFGSVDGDEPAAMRYTEARMSKIAVEMLR 121 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 ++++ +D++ Y++ ++EPVV P++ PNLL NG +GIAVGM T+IP HN+ E+ Sbjct: 122 DINKNTIDWQRNYDDTENEPVVLPARIPNLLINGANGIAVGMTTNIPPHNLSEVISGLHM 181 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265 L+ NP+ + + L++ I GPDFPT G I+ R I +Y G+G VRA +E G Sbjct: 182 LMKNPDATTKDLMKVIPGPDFPT-GGIIMGRGGIYRAYESGKGNIVVRAETNIETEKSGR 240 Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLL 325 I+V+EIPY V K+ L++KIA+L K I + +RDES + + R ++ Sbjct: 241 ERIIVSEIPYMVNKAELVKKIADLAREKIIDGITGVRDESDQTGMRITIDIRRDASASVV 300 Query: 326 MESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDR 385 + ++F + M+ F +NM + G P + L +L+ +L H+++V+ RR+ F + + Sbjct: 301 LNNLFKQTQMQANFGMNMVAIVDG-APHYLTLKQMLQYYLDHQKDVVTRRTKFELAKAEA 359 Query: 386 RVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKL 442 R IL+GL IA NIDEI+ IIR + D K ++SRF L + Q AIL++RL L L Sbjct: 360 RAHILEGLRIALDNIDEIVHIIRSSHSSDIAKATLISRFGLDDKQSQAILDMRLVRLTGL 419 Query: 443 EEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEV 502 E ++++E L A+ +L ++ I E+ ++++ F +RRT E+ Sbjct: 420 ERDKVEAEYKELQAKIADYKDILAKPERIDKIIYDELLDIQKRFGD-----KRRT---EI 471 Query: 503 SRADKATLQ-QAMIEKEPITVVISNRGWIRSLKSHSVD--------LSALHFKEGDSLKI 553 ++ +++ + +IEK+ I + +++ G+I+ + + + ++GD ++ Sbjct: 472 GASEVVSIEDEDLIEKQNILLTVTHNGYIKRMPIQEFKTQNRGGKGIKGMGVQDGDFIEH 531 Query: 554 ALHAHTTDRILLLSTDGKAYT---------------LPAGNLLSGRGHGEAIQLLIDLNH 598 +++ T D +L + GK Y+ LP NLL GE +Q +I++ Sbjct: 532 LIYSSTHDMLLFFTNAGKVYSRKAYEIPEYGRMAKGLPVVNLLQLE-KGEKVQTVINVPE 590 Query: 599 NQD 601 D Sbjct: 591 GAD 593 >gi|110803503|ref|YP_699348.1| DNA topoisomerase IV subunit A [Clostridium perfringens SM101] gi|110684004|gb|ABG87374.1| DNA gyrase/topoisomerase IV, A subunit family protein [Clostridium perfringens SM101] Length = 979 Score = 369 bits (947), Expect = 1e-99, Method: Compositional matrix adjust. Identities = 211/599 (35%), Positives = 354/599 (59%), Gaps = 27/599 (4%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 + N+ + L + + YL YA+ K+RA+PD+RDG KPVHRRI++ + + Sbjct: 11 DNNIIRMPLEEVMPDNYLPYAVEVAKDRALPDVRDGLKPVHRRILYGAYMLKAFPDKPYY 70 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSARIVG+++GK HPHGD SVYD++V LAQ F R PLI G GN+G+IDGD AAA RYTE Sbjct: 71 KSARIVGDILGKYHPHGDSSVYDAMVILAQNFSTRAPLIDGHGNWGSIDGDGAAAMRYTE 130 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 AR++ ++ +L+ ++++ VD Y++ + EP V P+++PNLL NGT GIAVG++T+IP Sbjct: 131 ARLSSISMEMLRDIEKNVVDMVPNYSDSEMEPKVLPARYPNLLVNGTFGIAVGLSTNIPP 190 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN++E+ + LA IDN EI+ +L+ YI GPD PTGG+++ ++++ +Y G G +R Sbjct: 191 HNLREVIDGTLAYIDNNEITTRELMNYIKGPDLPTGGVLI-GEKTLLSAYETGEGKVTLR 249 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR----IPLLEDIRDESAED- 308 A+ +E + G IV+TE PY+ K+R+++ I+++ KR + + DIRDES Sbjct: 250 AKAKIETLENGRLGIVITEFPYRRNKARILQTISDMTGDKRHAKALDGIVDIRDESDRTG 309 Query: 309 VRIVLFPKNRSLDPDL---LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365 +R V+ K +++D D+ +++ ++ +D++ NM L+ G+ P+ M L I+ ++ Sbjct: 310 IRAVIEFK-KAVDHDMADKVLKYLYKKTDLQGNISFNMVALADGK-PETMGLKTIISHYV 367 Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFS 422 H+++V+ RR+ ++ ++R I++G + A +DE+IA IR K +V +F Sbjct: 368 NHQKDVVTRRTKRELEVAEKRFHIVEGFIKAIGIMDEVIATIRASKSKKDAHENLVLKFG 427 Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482 T+ Q +AIL L L L LE + E L + + + +L + I E++EV Sbjct: 428 FTDLQAEAILELMLYRLTGLEIKVFQKEHKELSKKIKALRKILENESVLLGVIKDELKEV 487 Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS--LKSH---S 537 E++ RRT E K L++ +I E + V +SN G+I+ LK++ + Sbjct: 488 AEVYG-----DERRTALIEDESEAKIDLEE-LIVAEDVMVTLSNEGFIKKIPLKTYNRSN 541 Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLI 594 VD + + ++EGD LK + ++T D + + + G Y + ++ + GE ++ LI Sbjct: 542 VDENEIEYREGDYLKFLIKSNTKDTLAIFTDKGTVYQIKCNSVADKKWKDKGERLEDLI 600 >gi|116492721|ref|YP_804456.1| DNA topoisomerase IV subunit A [Pediococcus pentosaceus ATCC 25745] gi|116102871|gb|ABJ68014.1| DNA topoisomerase IV subunit A [Pediococcus pentosaceus ATCC 25745] Length = 817 Score = 369 bits (947), Expect = 1e-99, Method: Compositional matrix adjust. Identities = 226/726 (31%), Positives = 407/726 (56%), Gaps = 35/726 (4%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 + ++ ++L + +R+ Y+ I+ERA+PD+RDG KPV RRI+ AM++ G AF+ Sbjct: 5 QSKIQELALEDIMGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMNKDGNTHDKAFR 64 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSA+ VG V+G HPHGD S+Y++LVR++Q + R PLI GN G+ID D AA RYTE Sbjct: 65 KSAKSVGNVMGNFHPHGDSSIYEALVRMSQDWKLRVPLIEMHGNNGSIDNDPPAAMRYTE 124 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 AR+++ AE +L +D++ VD +++ + EP V P++FPNLL NG +GI+ G AT IP Sbjct: 125 ARLSEAAEEMLNDIDKETVDMVLNFDDTEYEPTVLPARFPNLLVNGATGISAGYATEIPP 184 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E+ +A L I +P S+EKL+E++ GPDFPTGGII + + ++YR G+G VR Sbjct: 185 HNLGEVIDAVLYTIKHPNPSLEKLMEFVKGPDFPTGGII-QGINGLKQAYRTGKGRVVVR 243 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVL 313 ++ VEE+ I+V+EIPY+V K+ L++KI E+ + K++ + +IRDES D + Sbjct: 244 SKTSVEEIRGNKKQIIVSEIPYEVNKALLVKKIDEIRVMKKVDGIAEIRDESDRDGLSIA 303 Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373 + +D ++ +F +D++ + NM ++ R P+ M L I++ ++ ++EV+ Sbjct: 304 IELKKDVDARGILNYLFKNTDLQVSYNFNMVAINKLR-PERMGLKEIIQAYVDFQKEVIT 362 Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDK--PKPVMVSRFSLTENQVDA 430 +R+ F ++ + R+ I+ GL+ A +D++I IR ++DK K +++ F +E Q +A Sbjct: 363 KRTKFNLKKAEDRLHIVAGLIKALSILDQVIKTIRGSKDKKDAKQNLITSFDFSERQAEA 422 Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490 I++L+L L + ++KSE L ++ +++LN+ + ++ E+R+VK+ ++ Sbjct: 423 IVSLQLYRLTNTDVTELKSEAKALNDSIDEFNNILNNPNELSKVLSAELRQVKKRYATP- 481 Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSVDLSALHFKEG 548 R + + + + + +E + V++S G+++ SL+S+ KEG Sbjct: 482 -----RLSEIQEHIEELVVDRTITVPEEQVMVLVSQSGYLKRSSLRSYKASAEEDGLKEG 536 Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAF 606 D +T D +++L+ G P ++ R GE I I L ++ I+ AF Sbjct: 537 DFTVFKKELNTLDHLIMLTNKGNLIYRPVHEIMETRWKDTGEHISQAIGLADDEIILKAF 596 Query: 607 ---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLK--------VSSEEKM----K 651 +D L+ +S G +I S + + + G+T+ K +++ K+ K Sbjct: 597 DVKNFDEPVSFLIATSDG--YIKRTS--LKDFKPGRTYRKKAAVYIKLKAADAKVVNVAK 652 Query: 652 LVVKVTGDHVAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEGLT 710 L + T + + + N L + + ++PE+ R GV+ ++ I++ + + + Sbjct: 653 LTSQSTKETILLATRNGYGLRYDLIEVPEVGPRAAGVKSMDLREDEIANFVLVNDHDQIG 712 Query: 711 WIDSAG 716 I + G Sbjct: 713 LITNRG 718 >gi|288802170|ref|ZP_06407610.1| DNA gyrase, A subunit [Prevotella melaninogenica D18] gi|288335137|gb|EFC73572.1| DNA gyrase, A subunit [Prevotella melaninogenica D18] Length = 847 Score = 369 bits (947), Expect = 1e-99, Method: Compositional matrix adjust. Identities = 237/715 (33%), Positives = 379/715 (53%), Gaps = 54/715 (7%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 +++ ++ Y+ Y++S I RA+PD+RDGFKPVHRRI+ M +G +KK AR+V Sbjct: 3 INIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILFGMRGIGNFSNQPYKKCARVV 62 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 GEV+GK HPHGD SVY +LVR+ Q + RY L+ GQGNFG++DGDSAAA RYTE R++++ Sbjct: 63 GEVLGKYHPHGDSSVYGALVRMGQDWNMRYKLVDGQGNFGSVDGDSAAAMRYTECRLSKM 122 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 E ++ +++D VD + +++ EP V P+K PNLL NG +GIAVGMAT+IP+HN+ E+ Sbjct: 123 GEHVMDDIEKDTVDMVNNFDDTLREPAVMPTKIPNLLVNGGNGIAVGMATNIPTHNLGEV 182 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 + A IDNPEIS + L+E+I PDFPTG I + + ++Y GRG +RA+ +E Sbjct: 183 IDGCCAYIDNPEISTDGLMEFIPAPDFPTGAYIY-GLQGVKDAYETGRGRVVMRAKAEIE 241 Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLFPKNR 318 IVVTEIPY V K +LIE IA+L+ ++ + ++ DE+ + +RIV+ K R Sbjct: 242 S-DESHDKIVVTEIPYGVNKQQLIEYIADLVKEGKLEGISNVNDETGRQGMRIVVDVK-R 299 Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378 + ++++ +F ++ +++ F +N L GR P+++ L +K ++ HR +V RR+ F Sbjct: 300 DANANVILNKLFKMTALQSSFSVNCIALVAGR-PRLLSLRECIKYFVEHRHDVTIRRAQF 358 Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVDAILNLR 435 ++ R IL+ L+ A NIDE++ IIR P + RF E Q AI+++R Sbjct: 359 DLKKAQERAHILEALIKACDNIDEVVRIIRASKTPSEAQKNLEKRFDFDELQSKAIVDMR 418 Query: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495 L L L Q+ E + L+ + + +LN+ ++ + E++EVKE + R Sbjct: 419 LSQLTGLRLDQLHQEFEELMQTIKDLQEILNNPERCKEVMKEELQEVKEKYGDD-----R 473 Query: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR-----SLKSHS---VDLSALHFKE 547 RT E+ + + +P+ + IS+ G+I+ K + V +E Sbjct: 474 RT---EIIPDEHEFNAEDFYPNDPVVITISHLGYIKRTPLADFKEQARGGVGSKGARTRE 530 Query: 548 GDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQDIVTA 605 D + A +L + G+ Y + ++ G G AIQ ++ L D V A Sbjct: 531 KDFTEYIYPATMHQTMLFFTRKGRCYWMKCYDIPEGDKNSKGRAIQNMLSLEPG-DSVNA 589 Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG---KTFLKVSSEEKMKLVVKVT---GD 659 F L + + ++ ++ T++G KT L+ S + V+ + GD Sbjct: 590 F--------LRIQGLDDDDFLDSHYVVFATKQGIVKKTSLRAYSRPRTNGVIAININEGD 641 Query: 660 HVA------------VVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVI 701 V + N + F I M R GVR D G +V+ Sbjct: 642 EVVDVRLTNGHNELIIADRNGRACRFDESNIRTMGRVSTGVRGMRLDDDGQDEVV 696 >gi|308177798|ref|YP_003917204.1| DNA gyrase subunit A [Arthrobacter arilaitensis Re117] gi|307745261|emb|CBT76233.1| putative DNA gyrase subunit A [Arthrobacter arilaitensis Re117] Length = 877 Score = 369 bits (946), Expect = 1e-99, Method: Compositional matrix adjust. Identities = 249/723 (34%), Positives = 386/723 (53%), Gaps = 44/723 (6%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 EN+ + + +E +L YA S I RA+PD RDG KPV RRI+ M++MGL K Sbjct: 15 ENIVDIDVTNEMESSFLEYAYSVIYSRALPDARDGLKPVQRRILFQMAQMGLRPEKGHVK 74 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 SAR+VGEV+GKLHPHGD ++YD++VRLAQ F R PLI G GNFG++D D AA RYTEA Sbjct: 75 SARVVGEVMGKLHPHGDTAIYDAMVRLAQDFSLRLPLIDGHGNFGSLD-DGPAAPRYTEA 133 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 R+ A + +DED V+F Y+ + +P V PS FPNLL NGT+GIAVGMAT++ H Sbjct: 134 RLAASAVAMTANLDEDVVNFVPNYDNQFMQPEVLPSAFPNLLVNGTTGIAVGMATNMAPH 193 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 N+ E+ AA L+ +PE ++E+L+++I GPD P+GG V + I ++YR GRG FR RA Sbjct: 194 NLSEVVAAAQHLLVDPEATVEELMKFIPGPDLPSGG-SVTGLDGIKDAYRTGRGLFRTRA 252 Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD--ESAEDVRIV 312 +E++ +VVTE+PY V ++IEKI + + K+I + D+ D + +++V Sbjct: 253 TVVLEKISARKSGLVVTELPYGVGPEKVIEKIKDGVNNKKISGISDVVDLTDRHHGLKLV 312 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 + KN +P+ ++ S++ + ME F +N L G+ P+ M L +L ++ HR +V+ Sbjct: 313 IELKN-GFNPNAVLASLYKYTPMEDSFGINNVALVNGQ-PRTMGLRELLTVYVDHRLDVV 370 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVD 429 RR++ R+ + R+ +++GLLIA ++ID++IAIIR+ ++ +++ F L+E Q Sbjct: 371 RRRTTHRLAKREDRLHLVEGLLIAIVDIDDVIAIIRSSEQTAEARERLMTVFDLSEPQAS 430 Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS-- 487 IL LRLR L K + ++++E + L E E++ ++L S + N ++ E+ ++ E F Sbjct: 431 HILELRLRQLTKYSKLELETEAEQLRKEIEELRAILESDQLLRNLVSDELGQMAETFGTP 490 Query: 488 ------KSTDLGRRRTTFC--EVSRADKATLQQAM-IEKEPITVVISNRGWI-RSLKSHS 537 KS L + T EV KA L AM + P V++S G I R+ Sbjct: 491 RRTKLLKSAQLAPLKGTALPEEVGTGKKAKL--AMEVSDTPCWVLLSATGQIARTQDRTD 548 Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGK--------AYTLPAGNLLSGRGHGEA 589 +D SA K D L + + I L+T G+ LP + HG Sbjct: 549 LDHSAARIKH-DVLTSQVASSARGEIGALTTTGRIVRISLIDVPVLPESHGFPQLAHGVP 607 Query: 590 IQLLIDLNHNQDIVTAFVYDST----CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS 645 I + L + + + K VV + + E A T K K + + Sbjct: 608 IAEFLKLGQAETVAALVPLNQVVAIGTKNGVVKRVTPDYPLNRDEFEAITLKDKDVVVAA 667 Query: 646 SEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKI 705 + + D + + ++ +LL FS + R G + K G VI F + Sbjct: 668 TPAQ-------DADELVFITKHAQLLRFSASVVRAQGR-TGQGMSGIKLGADDQVIFFGV 719 Query: 706 CEG 708 G Sbjct: 720 VPG 722 >gi|308235538|ref|ZP_07666275.1| DNA gyrase subunit A [Gardnerella vaginalis ATCC 14018] Length = 580 Score = 369 bits (946), Expect = 1e-99, Method: Compositional matrix adjust. Identities = 210/528 (39%), Positives = 321/528 (60%), Gaps = 21/528 (3%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 VK + L+ + E YLAYALS I ERA+PD+RDG KPVHRR+I+AM + G + K + Sbjct: 43 VKHMDLQQEMRESYLAYALSVIVERALPDVRDGLKPVHRRVIYAMYDGGYRPDRGYNKCS 102 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+V+GK HPHGD ++YD+LVR+AQ + RY L+ GQGNFG+ D AAA RYTE RM Sbjct: 103 RVVGDVMGKYHPHGDSAIYDTLVRMAQSWSMRYMLVDGQGNFGSPGDDPAAAMRYTECRM 162 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 +A +++ +D+D VDF Y+ + EP V P++FPNLL NG++GIAVGMAT+IP HN+ Sbjct: 163 APLAMEMVRDIDKDTVDFLPNYDGKTQEPTVLPARFPNLLVNGSAGIAVGMATNIPPHNM 222 Query: 197 QEICEAALALIDNPEISIEKLLEYII----GPDFPTGGIIVESRESIVESYRLGRGGFRV 252 +E+ + +D+P+ S +LLE +I GPDFPTG I+ + I ++YR GRG + Sbjct: 223 REVADGVHWALDHPDASNSELLEALIQRIKGPDFPTGATIL-GHKGIEQAYRTGRGLITM 281 Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV--R 310 RA EE+ +G C+VVTE+PYQV RL I E + +I + D+RDE++ R Sbjct: 282 RAVVNTEEI-KGRMCLVVTELPYQVNPDRLAASIREAVRDGKIQGIADMRDETSGRTGQR 340 Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370 +VL K R P +++ +++ S ++ F NM L G VP+ + LD ++ W++H+ E Sbjct: 341 LVLVLK-RDAVPKVVLNNLYKHSQLQQTFGANMLALVDG-VPRTLSLDAFIRHWVSHQLE 398 Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQ 427 V+ RR+ + + + R IL+G L A IDE++A+IR+ D + +++ + + Q Sbjct: 399 VIDRRTRYLKREAEERDHILQGYLKALDMIDEVVALIRSSKDVDTARTGLMNLLDVDDVQ 458 Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487 DAIL ++LR L LE +I E + L+ + E + +L S ++Q + E+ EI + Sbjct: 459 ADAILAMQLRRLAALERQKILDEHEELMRKIEDYNDILASPERQRKIVGDEL---DEIVA 515 Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKS 535 K D RRT S + +I +E + V ++ G+I+ K+ Sbjct: 516 KYGD--ERRTRILPFSGEMNV---EDLIAEENVVVTVTRAGYIKRTKA 558 >gi|255975796|ref|ZP_05426382.1| DNA topoisomerase IV subunit A [Enterococcus faecalis T2] gi|255968668|gb|EET99290.1| DNA topoisomerase IV subunit A [Enterococcus faecalis T2] Length = 820 Score = 369 bits (946), Expect = 1e-99, Method: Compositional matrix adjust. Identities = 211/618 (34%), Positives = 366/618 (59%), Gaps = 19/618 (3%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 + V+ ++L + +R+ Y+ I+ERA+PD+RDG KPV RRI+ +M++ G F F+K Sbjct: 5 QEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFSMNKDGNTFDKGFRK 64 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 SA+ VG ++G HPHGD S+Y+++VRL+Q + R LI GN G++DGD AA RYTEA Sbjct: 65 SAKSVGNIMGNYHPHGDSSIYEAMVRLSQDWKLREVLIEMYGNNGSMDGDPPAAMRYTEA 124 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 R++Q++ +L+ +D++ VDF +++ + EP V P+K+PNLL NG++GI+ G AT IP+H Sbjct: 125 RLSQLSGELLKDIDKNTVDFVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATEIPTH 184 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 N+ EI + + LID+P S+EKL+EYI GPDFPTGGI+ + + I ++Y GRG +RA Sbjct: 185 NLAEIIDGTVYLIDHPNASLEKLMEYIPGPDFPTGGIL-QGKAEIKKAYETGRGKVILRA 243 Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314 + +E + G IV++EIPY+V K+ L++K+ E+ + K++ + ++RDES ++ Sbjct: 244 KTKIEPLKGGKQQIVISEIPYEVNKATLVKKMDEIRLNKKVDGIAEVRDESDRTGLQIVV 303 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 + ++ + ++ +F ++++ + NM + PQ + L IL+ ++ HR+ V+ Sbjct: 304 ELKKDVNAEGILNYLFKNTELQINYNFNMVAID-NMTPQQVGLKRILESYITHRKSVIIN 362 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDK--PKPVMVSRFSLTENQVDAI 431 R F + +R I+ GL+ A +D++IA IR ++DK K +VS ++ TE Q +AI Sbjct: 363 RCQFELDKARKREHIVAGLIKALSILDKVIATIRGSKDKKDAKKNLVSDYAFTEEQAEAI 422 Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491 + L+L L + ++ E L + ++ ++LN+ K+ ++ + E+REVK+ + Sbjct: 423 VTLQLYRLTNTDITDLQEEAKTLEQQIAELLNILNNEKELFSVMKKELREVKKQY----- 477 Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSVDL-SALHFKEG 548 G R T E + ++ +E + V +++ G+I+ S++S++ + KEG Sbjct: 478 -GNPRLTQIEEEIQEIKIETAVLVAQEDVVVTVTHEGYIKRSSIRSYTASKPEEIGMKEG 536 Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAI-QLLIDLNHNQDIVTA 605 D L A +T D +LL++ G P L L + GE I Q +++L ++ I+ Sbjct: 537 DFLLYAGEVNTLDHLLLVTNKGNMIYRPVHELPDLRWKEIGEHISQTILNLAIDESIIAV 596 Query: 606 FVYD--STCKLLVVSSKG 621 + Y S K V +K Sbjct: 597 YPYKELSPTKTFVFITKA 614 >gi|313835160|gb|EFS72874.1| DNA gyrase, A subunit [Propionibacterium acnes HL037PA2] gi|314929136|gb|EFS92967.1| DNA gyrase, A subunit [Propionibacterium acnes HL044PA1] gi|314970917|gb|EFT15015.1| DNA gyrase, A subunit [Propionibacterium acnes HL037PA3] Length = 891 Score = 369 bits (946), Expect = 1e-99, Method: Compositional matrix adjust. Identities = 241/702 (34%), Positives = 385/702 (54%), Gaps = 55/702 (7%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 ++ V +R ++ YL YA+S I RA+PD+RDG KPVHRR+I+AM + G + K + Sbjct: 26 IQPVEIRDEIQNAYLDYAMSVIVGRALPDVRDGLKPVHRRVIYAMYDGGYRPDRGWNKCS 85 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+V+GK HPHGD ++YD+LVRLAQP+ RY L+ GQGNFG+ D AAA RYTE +M Sbjct: 86 RVVGDVMGKYHPHGDSAIYDTLVRLAQPWAMRYKLVQGQGNFGSQGNDGAAAMRYTECKM 145 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 +A +++ +D+D VDF+ Y+ +++EPVV PS+FPNLL NG+SGIAVGMAT+IP+HN+ Sbjct: 146 APLAMEMVRDIDQDTVDFQPNYDNKETEPVVLPSRFPNLLVNGSSGIAVGMATNIPTHNL 205 Query: 197 QEICEAALALIDNPEISIEKLLEY----IIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252 +E+ A + +P+ S E+LLE I GPDFP G +IV R+ I ++YR GRG + Sbjct: 206 REVNRAVQWSLAHPDASSEELLEACMERIKGPDFPGGALIV-GRQGIEDAYRTGRGSVTM 264 Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV--R 310 RA +EE +G C+VVTE+PY L KIAEL+ + RI + DIRD+S+ R Sbjct: 265 RAVIDMEEDKKGRQCLVVTELPYMCNPDNLATKIAELVNSGRINGIADIRDDSSARTGQR 324 Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370 +V+ K R P ++M +++ + ++ F NM L + VP+ + LD + W+ H+ E Sbjct: 325 LVIVLK-RDAQPRVVMNNLYKHTALQDTFGCNMLAL-VDNVPRTLRLDQFISYWIDHQME 382 Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQ 427 V+ RR+ +R+ ++ I + L+ A +DE+IA+IR N + + + E Q Sbjct: 383 VIRRRTEYRLAQAEKDAHIQRALVKALDMLDEVIALIRRSPNTEAASTGLQELLDIDEIQ 442 Query: 428 VDAILNLRLRSLRKLEEYQI---KSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE 484 AIL+++LR L LE +I EL+ L+A+ + I L S +Q I+ E+ E+ + Sbjct: 443 ARAILDMQLRRLAALERQKIIDRLEELERLIADYKAI---LASDDRQREIISTELAEIVD 499 Query: 485 IFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH 544 + RRT AD ++ I + + V I+ G+ + ++ DL + Sbjct: 500 KYGDE-----RRTRIIA---ADGDFSEEDFIPDDDVVVTITRGGYAKRTRT---DLYRVQ 548 Query: 545 FKEGDSLK---------IALHAHTTDR--ILLLSTDGKAY-----TLPAGNLLSGRGHGE 588 + G ++ +A TT+ IL + G+ Y LP + GH Sbjct: 549 KRGGKGVRGASLRADDEVAQLFTTTNHQWILFFTNMGRVYRTKVWQLPEAGRDAKGGHVA 608 Query: 589 AIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIA--NTRKGKTF---LK 643 + + ++T Y+ LL+ + KG +V+++ + A ++R+ + Sbjct: 609 GLLSFLPDEKIAQVMTLRSYEDAEYLLLATRKG---MVKKTALKAYDSSRQAGVIAINFR 665 Query: 644 VSSEEKMKLVVKVTGDHVAVVGENRKLLIFSI--DQIPEMSR 683 +E + GD V ++ + + FS DQ+ M R Sbjct: 666 TEDDELIGAEQCSAGDDVLLISRKGQAIRFSAGDDQLRSMGR 707 >gi|297558992|ref|YP_003677966.1| DNA gyrase subunit alpha [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296843440|gb|ADH65460.1| DNA gyrase, A subunit [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 870 Score = 369 bits (946), Expect = 1e-99, Method: Compositional matrix adjust. Identities = 227/645 (35%), Positives = 357/645 (55%), Gaps = 39/645 (6%) Query: 2 GVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61 G D+ + V + ++ V ++ ++ YL YA+S I RA+PD+RDG KPVH+R+++AM Sbjct: 12 GGDSTVEAPPRVTDRIEPVDIQVEMQRSYLDYAMSVIVGRALPDVRDGLKPVHQRVLYAM 71 Query: 62 SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121 + G + K AR+VG+V+G HPHGD ++YD+LVRLAQ + R PL+ GNFG+ Sbjct: 72 YDGGYRPDRGYFKCARVVGDVMGNYHPHGDSAIYDTLVRLAQWWSMRMPLVDPNGNFGSA 131 Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181 D AAA RYTE ++ +A +L+ +D+D VDFR Y+ SEPVV P++FPNLL NG+S Sbjct: 132 GNDPAAAMRYTECKLAPLAMEMLRDIDKDTVDFRPNYDGRSSEPVVLPARFPNLLVNGSS 191 Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYII----GPDFPTGGIIVESRE 237 GIAVGMAT+IP HN++E+ + +DNPE E+LL+ +I GPDFPT G+IV R Sbjct: 192 GIAVGMATNIPPHNLREVADGVNWYLDNPEAQDEELLDALIARVKGPDFPTRGLIVGKR- 250 Query: 238 SIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL 297 I E+YR GRG +RA VEE RG +VVTE+PYQV L KIA+L+ +I Sbjct: 251 GIEEAYRTGRGSITMRAVVEVEEDKRGRQTLVVTELPYQVNPDNLALKIADLVKDGKITG 310 Query: 298 LEDIRDESAEDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVM 355 + D+RDES+ R+V+ K R +++ +++ + ++ F NM L G VP+ + Sbjct: 311 IADVRDESSGRTGQRLVIVLK-RDAVAKVVLNNLYKHTQLQETFGANMLALVDG-VPRTL 368 Query: 356 PLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDK 412 LD +++ W+ H+ EV+ RR+ + ++ + R IL+ LL A IDE+I +IR + D+ Sbjct: 369 RLDQMIRHWVKHQVEVIVRRTRYLLRKAEERAHILRALLRAMDRIDEVINLIRASASADQ 428 Query: 413 PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQW 472 + ++ + + Q AIL+++LR L LE + +E D L+A+ + +L S +Q Sbjct: 429 ARTGLMDLLEIDDIQARAILDMQLRKLAALERNALTAEYDELMAQIADYNDILESDTRQR 488 Query: 473 NQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--- 529 + I E+ E+ E + RRT + + I +E + V IS G+ Sbjct: 489 SIIREELGEIVEKYGDE-----RRTHIIPF---EGDMRMEDFIAEEDVVVTISRGGYAKR 540 Query: 530 -----IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGN 579 R+ K + K+ D ++ T + IL + G KAY LP Sbjct: 541 TRIDNYRAQKRGGKGVRGAQLKQDDIVQHFFVTTTHNWILCFTNQGRVYRTKAYELPEA- 599 Query: 580 LLSGRGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKG 621 + G+ + L+ ++I Y++ L++ + +G Sbjct: 600 --ARDARGQHVANLLPFQPGEEIAQIMALRDYEAAPYLVLATREG 642 >gi|145592575|ref|YP_001156872.1| DNA gyrase subunit A [Salinispora tropica CNB-440] gi|145301912|gb|ABP52494.1| DNA gyrase subunit A [Salinispora tropica CNB-440] Length = 839 Score = 369 bits (946), Expect = 1e-99, Method: Compositional matrix adjust. Identities = 225/597 (37%), Positives = 339/597 (56%), Gaps = 33/597 (5%) Query: 12 LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71 + + ++ V L ++ YL YA+S I RA+PD+RDG KPVHR+I++AM + G Sbjct: 22 VAHDRIEPVGLEVEMQRSYLDYAMSVIVGRALPDVRDGLKPVHRKILYAMFDSGYRPDRG 81 Query: 72 FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131 + K +R+VG+V+G+ HPHGD ++YD+LVR+AQP+ RYPL+ G GNFG+ D AAA RY Sbjct: 82 YVKCSRVVGDVMGQFHPHGDSAIYDALVRMAQPWALRYPLVDGNGNFGSPGNDPAAAMRY 141 Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191 TE ++ +A +L+ +DED VD +D Y+ EP + PS+ PNLL NG+ GIAVGMAT I Sbjct: 142 TECKLEPLAMEMLRDIDEDTVDLQDNYDGRAKEPTILPSRIPNLLVNGSEGIAVGMATKI 201 Query: 192 PSHNVQEICEAALALIDNPEI----SIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247 P HN++EI A +++PE ++E LL + GPDFPT G+IV R I ++YR GR Sbjct: 202 PPHNLREIGAAVQWCLEHPEADEASTLEALLGIVKGPDFPTHGLIV-GRAGIQDAYRTGR 260 Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA- 306 G R+RA VEE RG +VV+E+PYQV L E+IAELI ++ + DIRDES+ Sbjct: 261 GSIRMRAVVEVEEDKRGRPALVVSELPYQVNPDNLAERIAELIKEGKLAGIADIRDESSG 320 Query: 307 -EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365 +R+VL K R +++ +++ + ++ F NM L G VP+ + L ++ ++ Sbjct: 321 RTGMRLVLVLK-RDAVAKVVLNNLYKHTQLQETFGANMLALVDG-VPRTLNLAQFIRYYV 378 Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFS 422 AH+ EV+ RR++FR++ + R IL+GL A +DE+IA+IR D + ++ Sbjct: 379 AHQIEVIRRRTAFRLRKAEERAHILRGLAKALDALDEVIALIRRSPTVDDARQGLIRLLE 438 Query: 423 LTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREV 482 + E Q AIL+++LR L LE +I +L L E +L ++Q +I E E+ Sbjct: 439 IDEIQATAILDMQLRRLAALERQRILDDLAKLELEIADFKDILAKPERQ-RRIVSE--EL 495 Query: 483 KEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLK 534 EI +K D RRT D + +I +E I V I+ G+ RS + Sbjct: 496 GEIVAKWGD--DRRTQIIPF---DGEVSMEDLIAREDIVVTITRTGYAKRTKVDAYRSQR 550 Query: 535 SHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGH 586 +S ++ D + T D IL + G KAY LP + ++ H Sbjct: 551 RGGKGVSGASLRQDDIVSHFFVCSTHDWILFFTNKGRVYRAKAYELPEASRVAKGQH 607 >gi|257054096|ref|YP_003131928.1| DNA gyrase subunit A [Saccharomonospora viridis DSM 43017] gi|256583968|gb|ACU95101.1| DNA gyrase subunit A [Saccharomonospora viridis DSM 43017] Length = 841 Score = 369 bits (946), Expect = 1e-99, Method: Compositional matrix adjust. Identities = 218/589 (37%), Positives = 337/589 (57%), Gaps = 41/589 (6%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 V+ V ++ ++ Y+ YA+S I RA+PD+RDG KPVHRR++++M + G + K + Sbjct: 13 VEPVDIQQEMQNSYINYAMSVIVSRALPDVRDGLKPVHRRVLYSMYDSGFRPDRGYNKCS 72 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+V+G HPHGD ++YD+LVRLAQ + RYPLI GQGNFG+ D AAA RYTEAR+ Sbjct: 73 RVVGDVMGNYHPHGDSAIYDALVRLAQRWSMRYPLIDGQGNFGSPGNDPAAAMRYTEARL 132 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 +A +L+ ++ED VDF D Y+ EP V PS+ PNLL NG SGIAVGMAT+IP HN+ Sbjct: 133 DPLAMEMLRDIEEDTVDFSDNYDGRTQEPDVLPSRIPNLLVNGGSGIAVGMATNIPPHNL 192 Query: 197 QEICEAALALIDNP----EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252 +E+ + + +DNP E ++ L++ I GPDFPT G I+ + + I ++YR GRG R+ Sbjct: 193 REVVDGVIWALDNPDADEEETLAALMQRIKGPDFPTSGQILGT-QGIADAYRTGRGSIRM 251 Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE--DVR 310 RA VEE +G +VVTE+PYQV L+E IA L +I + DI DES +R Sbjct: 252 RAVVEVEEDAKGRTTLVVTELPYQVNPDNLVENIASLARDGKIAGIADIADESNSRGGMR 311 Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370 IV+ K R +++ +++ + ++ F +NM L G VP+ + LD +++ ++ H+ + Sbjct: 312 IVITLK-RDAVAKVVLNNLYKHTQLQYNFGVNMLALVDG-VPRTLRLDQMVRHYVNHQID 369 Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQ 427 V+ RR+ +R++ + R +L+GL A ++D +I +IR N D+ + ++ + E Q Sbjct: 370 VIVRRTRYRLRKAEERAHVLRGLAKALDHLDAVIELIRRSPNADEARTGLMELLDIDEVQ 429 Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487 AIL+++LR L LE +I EL L A+ + +L+ ++Q + E+ E+ E + Sbjct: 430 ATAILDMQLRKLAALERQRILDELAELEAKIADLQDVLDKPERQREIVRTELLEITEKYG 489 Query: 488 KSTDLGRRRTTFC----EVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLKS 535 RRT +VS D +I +E + V I+ G+ RS K Sbjct: 490 DD-----RRTKIIPYEGDVSIED-------LIAEEDVVVTITRTGYAKRTKTDLYRSQKR 537 Query: 536 HSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGN 579 + K+ D ++ T D +L + G KAY LP N Sbjct: 538 GGKGVQGATLKQDDIVEHFFVCSTHDWVLFFTNKGRVYRAKAYDLPEAN 586 Score = 39.3 bits (90), Expect = 2.6, Method: Compositional matrix adjust. Identities = 35/149 (23%), Positives = 65/149 (43%), Gaps = 7/149 (4%) Query: 508 ATLQQAMIEKEPITVVISNRGWIRSLKSHSVD------LSALHFKEGDSLKIALHAHTTD 561 + +Q E P ++ + +G ++ + D L ++ +EGD L A+ A D Sbjct: 608 SVIQIPNYEVAPYLILGTKKGLVKKSRLADFDSPRSGGLIGINLREGDELVGAVLASAED 667 Query: 562 RILLLSTDGKAYTLPAGN-LLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLLVVSSK 620 +LL+S+DG++ A + +L G + L + N ++++ V LLV + Sbjct: 668 DLLLVSSDGQSIRFHANDEVLRPMGRATSGVLGMRFNEGAELLSINVIKPGTFLLVATEG 727 Query: 621 GNAFIVEESEIIANTRKGKTFLKVSSEEK 649 G A + R GK L + +EK Sbjct: 728 GYAKRTAVEDYPVQGRGGKGVLTIQHDEK 756 >gi|318040291|ref|ZP_07972247.1| DNA gyrase subunit A [Synechococcus sp. CB0101] Length = 846 Score = 369 bits (946), Expect = 1e-99, Method: Compositional matrix adjust. Identities = 244/696 (35%), Positives = 383/696 (55%), Gaps = 45/696 (6%) Query: 30 YLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPH 89 YL YA+S I RA+PD RDG KPVHRRI++AM E+GL ++K AR+VGEV+GK HPH Sbjct: 5 YLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTSDRPYRKCARVVGEVLGKYHPH 64 Query: 90 GDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV-AELILQGVD 148 GD +VYD+LVR+AQ F R PLI G GNFG++D D AA RYTE+R+ + + +L+ ++ Sbjct: 65 GDTAVYDALVRMAQDFSMRMPLIDGHGNFGSVDNDPPAAMRYTESRLQALTTDSLLEDIE 124 Query: 149 EDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALID 208 + VDF D ++ EP V PS+ P LL NG++GIAVGMAT+IP HN+ E+ + LALI+ Sbjct: 125 CETVDFIDNFDGSQQEPTVMPSRIPQLLLNGSTGIAVGMATNIPPHNLTELIDGLLALIE 184 Query: 209 NPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEV---GRGS 265 NPE+ +L+ I GPDFPTGG I+ R I E Y GRG +R +E + GR Sbjct: 185 NPELEDRELMRLIPGPDFPTGGQIL-GRSGIREMYTTGRGSVTMRGVASIETIEAKGRPD 243 Query: 266 W-CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDL 324 +++TE+PYQ K+ LIE+IAEL+ K++ + DIRDES D ++ R P + Sbjct: 244 RDAVIITELPYQTNKAALIERIAELVNDKKLEGIADIRDESDRDGMRIVIELRRDAYPQV 303 Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384 ++ ++F L+ +++ F M L G P ++ L +L+ +L R E + RR+ + ++ + Sbjct: 304 VLNNLFKLTPLQSNFSAYMLALVKGE-PVLLTLRKMLEVFLDFRVETIERRTRYLLRKAE 362 Query: 385 RRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAILNLRLRSLRK 441 R IL GLLIA N+D IIA+IR + + ++ +F L+E Q DAIL ++LR L Sbjct: 363 ERDHILLGLLIALDNLDAIIALIRSAADTATARAQLIEQFGLSEIQADAILQMQLRRLTA 422 Query: 442 LEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCE 501 LE +I+ E ++LLA+ +L ++ I E+ ++ + RRT + Sbjct: 423 LEADKIRLEHEDLLAKITDYKDILARKERVLALITEELGVLRSRYDSP-----RRTEILD 477 Query: 502 VSRADKATLQQA-MIEKEPITVVISNRGWIRSLKSHSVDLSA--LHFKEG------DSLK 552 V + L+ +I E V+++ G+++ + + ++ K G ++++ Sbjct: 478 V----EGGLEDIDLIANERSVVLLTENGYLKRMPVSEFEATSRGTRGKAGTRSQGEEAVR 533 Query: 553 IALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDI-----VTA 605 + + + D +LL S G YT+PA + S G I L+ + + I V+ Sbjct: 534 LFISCNDHDSLLLFSDRGVVYTVPAYRVPQCSRTAKGTPIVQLLPIPREEQITSLLAVSE 593 Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV---VKVTGDHVA 662 F D+ +LV+ + G AN R + +S EE L + GD + Sbjct: 594 FAEDA---VLVMLTSGGYIKRTRLSAFANIRS-NGLIAISLEEGDALTWVRLAQPGDSLL 649 Query: 663 VVGENRKLLIF--SIDQIPEMSR-GKGVRLQSYKDG 695 + N + F S +++ + R +GVR + + G Sbjct: 650 IGSRNGMTIHFRLSDEELRPLGRTARGVRAMNLRPG 685 >gi|164510809|emb|CAK18888.1| topoisomerase IV subunit A [Staphylococcus intermedius] Length = 803 Score = 369 bits (946), Expect = 1e-99, Method: Compositional matrix adjust. Identities = 199/600 (33%), Positives = 354/600 (59%), Gaps = 16/600 (2%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 E ++ + L + +R+ Y+ I+ERA+PD+RDG KPV RRI+++M G + F+K Sbjct: 3 EIIQNLPLVDVIGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYSMYSNGNTYDKHFRK 62 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 SA+ VG+VIG+LHPHGD SVYD++VRL+Q + R+ L+ GN G+ID D AA RYTEA Sbjct: 63 SAKTVGDVIGQLHPHGDSSVYDAMVRLSQDWKLRHVLVEMHGNNGSIDNDPPAAMRYTEA 122 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 +++Q++E +L+ + +D VDF Y++ + EP+V P++FPNLL NG++GI+ G AT IP H Sbjct: 123 KLSQLSEQLLRDIHKDTVDFVPNYDDTEMEPMVLPARFPNLLVNGSTGISAGYATDIPPH 182 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 N+ E+ A L IDNP++++++L++YI GPDFPTGG IV+ + I ++Y G+G VRA Sbjct: 183 NLAEVITATLKYIDNPDLTVKQLMQYIKGPDFPTGG-IVQGIDGIRKAYETGKGKVIVRA 241 Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314 + +E + G I+VTEIPY+V KS L++KI EL K++ + ++RDE+ V Sbjct: 242 KADIETLRNGRSQIIVTEIPYEVNKSSLVKKIDELRADKKVEGIVEVRDETDRSGLRVAV 301 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 + ++ ++ ++ +D++ + NM ++ GR P++M + I+ +L H+ EV+ R Sbjct: 302 ELKKDVNATSILNFLYKNTDLQVAYNFNMVAITEGR-PKLMGIKPIISSYLNHQIEVVTR 360 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVDAI 431 R+SF ++ + R+ I++GL+ A +DE+I +IRN + +V+ + TE Q +AI Sbjct: 361 RTSFDLKHTEERMHIVEGLMKALSILDEVIVLIRNSKNKRDAKNNLVATYDFTETQAEAI 420 Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491 + L+L L + ++ E D L + + +L + N I E+ E+K+ F + Sbjct: 421 VMLQLYRLTNTDIVALQEEYDELKQKIAALKHILENHDALLNVIKDELSEIKKQFKQP-- 478 Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA---LHFKEG 548 R + E ++ ++ ++ E + + ++ G+I+ S + S + KE Sbjct: 479 ----RLSVIEEKISEIKIDKEVIVPSETVMLSLTQAGYIKRTSLRSFNASGKEEIGLKER 534 Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAF 606 D + + +T D +++ + G+ +P L + + G+ + ++ + ++ +V + Sbjct: 535 DGVLKIIETNTQDYVMVFTNKGRYLLIPVHKLPDVKWKDLGQHVSQIVPIEEDERVVNCY 594 >gi|317164426|gb|ADV07967.1| DNA gyrase subunit A [Neisseria gonorrhoeae TCDC-NG08107] Length = 916 Score = 369 bits (946), Expect = 1e-99, Method: Compositional matrix adjust. Identities = 225/628 (35%), Positives = 352/628 (56%), Gaps = 65/628 (10%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 VSL + + YL YA+S I RA+PD+RDG KPVHRR+++AM E+ ++ AA+KKSARIV Sbjct: 19 VSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIV 78 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGD +VY+++VR+AQ F RY LI GQGNFG++DG +AAA RYTE RM ++ Sbjct: 79 GDVIGKYHPHGDFAVYNTIVRMAQNFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMAKI 138 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 + +L ++E+ V+F Y+ + EP+V P++FP LL NG+SGIAVGMAT+IP HN+ + Sbjct: 139 SHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGSSGIAVGMATNIPPHNLTDT 198 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 A L L+D P+ I++L++ I PDFPTG I + E Y+ GRG +R + +E Sbjct: 199 INACLRLLDEPKTEIDELIDIIQAPDFPTGATIY-GLGGVREGYKTGRGRVVMRGKTHIE 257 Query: 260 EVGRGS--WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317 +G+ IV+ EIPYQV K++L+EKI +L+ K + + ++RDES + V+ Sbjct: 258 PIGKNGEREAIVIDEIPYQVNKAKLVEKIGDLVREKTLEGISELRDESDKSGMRVVIELK 317 Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377 R+ + ++++ ++ L+ ++ F +NM VL G+ P+++ L IL E+L HRREV+ RR+ Sbjct: 318 RNENAEVVLNQLYKLTPLQDSFGINMVVLVDGQ-PRLLNLKQILSEFLRHRREVVTRRTL 376 Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSR-------------- 420 FR++ I +G +A NIDEII +I+ N + K +++R Sbjct: 377 FRLKKARHEGHIAEGKAVALSNIDEIIKLIKESPNAAEAKEKLLARPWRSSLVEEMLTRS 436 Query: 421 ----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458 + L+E Q DAIL + LR+L L++ +I NL+ + Sbjct: 437 GLDLEMMRPEGLAANIGLKKQGYYLSEIQADAILRMSLRNLTGLDQKEIIESYKNLMGKI 496 Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518 +L+ ++ I E+ E+K T+ G R + D A + +I + Sbjct: 497 IDFVDILSKPERITQIIRDELEEIK------TNYGDERRSEINPFGGDIA--DEDLIPQR 548 Query: 519 PITVVISNRGWIRSLKSHSVDL--------SALHFKEGDSLKIALHAHTTDRILLLSTDG 570 + V +++ G+I++ + A K+ D ++ A+T D ++ + G Sbjct: 549 EMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDYLMCFTNLG 608 Query: 571 KA-----YTLPAGNLLS-GRGHGEAIQL 592 K Y LP G S GR IQL Sbjct: 609 KCHWIKVYKLPEGGRNSRGRPINNVIQL 636 >gi|315613328|ref|ZP_07888237.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus sanguinis ATCC 49296] gi|315314563|gb|EFU62606.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus sanguinis ATCC 49296] Length = 826 Score = 369 bits (946), Expect = 1e-99, Method: Compositional matrix adjust. Identities = 226/709 (31%), Positives = 397/709 (55%), Gaps = 33/709 (4%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 N++ +SL + ER+ Y+ I++RA+PD+RDG KPV RRI+++M++ G F +++KS Sbjct: 3 NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDGNTFDKSYRKS 62 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 A+ VG ++G HPHGD S+YD++VR++Q + R L+ GN G++DGD AA RYTEAR Sbjct: 63 AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 ++++A +LQ +++ V F +++ + EP V P+ FPNLL NG++GI+ G AT IP HN Sbjct: 123 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 182 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 + E+ +A + +ID+P ++KL+E++ GPDFPTG II + R+ I ++Y G+G VR++ Sbjct: 183 LAEVIDATVYMIDHPTAKVDKLMEFLPGPDFPTGAII-QGRDEINKAYETGKGRVVVRSK 241 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315 VE++ G IV+TEIPY++ K+ L++KI ++ + ++ + ++RDES D + Sbjct: 242 TEVEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 301 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 + + +L++ +F +D++ + NM + P+ + + IL ++AHRREV+ R Sbjct: 302 LKKDANTELVLNYLFKYTDLQINYNFNMVAID-NFTPRQVGIVPILSSYIAHRREVILAR 360 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432 S F + ++R+ I++GL+ +DE+IA+IR N+ K + + TE Q +AI+ Sbjct: 361 SRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYEFTEEQAEAIV 420 Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492 L+L L + ++ E L + + +++ + +N + E+REVK+ F+ Sbjct: 421 TLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP--- 477 Query: 493 GRRRTTFCEVSRA---DKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FK 546 R +T + ++A D A+L I +E V ++ G+I+ S S L + Sbjct: 478 --RLSTLEDTAKAIEIDTASL----IAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKR 531 Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIV 603 + D L A TT +L+ +T G P L R GE + Q + + N++I+ Sbjct: 532 DDDRLIFVQAAKTTQHLLMFTTLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEIL 591 Query: 604 TAFV---YDSTCKLLVVSSKGNAFIVEESEIIA-NTRKGKT--FLKVSSE-EKMKLVVKV 656 A V +D + G VE E T K K+ + K+ E +++ V + Sbjct: 592 YAEVVDQFDDATTYFAATRLGQIKRVERKEFSPWRTYKSKSVKYAKLKDETDQIVAVAPI 651 Query: 657 TGDHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYK--DGGISDVIC 702 D V ++ +N L F+I+++P + ++ GV+ + K D + IC Sbjct: 652 RLDDVLLISQNGYALRFNIEEVPVVGAKAAGVKAMNLKADDALQAAFIC 700 >gi|313792128|gb|EFS40229.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes HL110PA1] gi|313801920|gb|EFS43154.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes HL110PA2] gi|314962787|gb|EFT06887.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes HL082PA1] gi|315078002|gb|EFT50053.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes HL053PA2] gi|327453154|gb|EGE99808.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes HL092PA1] Length = 844 Score = 369 bits (946), Expect = 1e-99, Method: Compositional matrix adjust. Identities = 198/521 (38%), Positives = 314/521 (60%), Gaps = 14/521 (2%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 EN+ V + +E +L YA S I RA+PD RDG KPV RRI++ M +MG+ K Sbjct: 12 ENIIDVDVSREMENSFLEYAYSVIYSRALPDARDGLKPVQRRILYTMGDMGVRPDRPHVK 71 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 SAR+VG+V+G+LHPHGD ++YD+LVR AQP+ R PL+ G GNFG++D AA RYTE Sbjct: 72 SARVVGQVMGQLHPHGDAAIYDALVRTAQPWAMRLPLVDGHGNFGSLDA-GPAAMRYTEC 130 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 RM A ++ G+DED VDF Y+ +++EP V P+ FPNLL NG SGIAVGMAT+IP H Sbjct: 131 RMAPPALTMIDGLDEDTVDFEPNYDGKETEPSVLPAAFPNLLVNGASGIAVGMATNIPPH 190 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 N+ E+ A ++D+P +++++ ++ GPD PTGG I+ + I ++Y GRG F++RA Sbjct: 191 NLVEVVAALRHMLDHPNADLDEIMRFVPGPDLPTGGRII-GLDGIADAYCTGRGSFKIRA 249 Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD--ESAEDVRIV 312 +E+V IVVTE+PY V R+I++I L+ +K+I + D++D + R+V Sbjct: 250 TARIEKVSPRRRGIVVTELPYMVGPERIIDQIKTLVQSKKITGIADVKDLTDLTNGTRLV 309 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 + KN ++P+ L+E ++ L+ +E F +N L G+ P+ + L +L+ +L HR +V Sbjct: 310 IEVKN-GINPEALLERLYKLTKLEDSFAINAVSLVEGQ-PRTLGLLEMLQVYLDHRLDVT 367 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVD 429 RR+ F++ R+ +++GLL+A ++ID++IAIIR+ + ++ F L E Q + Sbjct: 368 LRRTKFQLNKAQDRLHLVEGLLLAIVDIDDVIAIIRSSEDAAAARTRLMGTFDLDEVQAN 427 Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489 IL+++LR L K +++SE D L E + ++N + ++ E+ EV + Sbjct: 428 YILDMQLRRLTKFSTIELESERDELRERIEGLTLIVNDKAELRRVVSGELVEVSSKYGTP 487 Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI 530 RRT + + AT + +P V++S G + Sbjct: 488 -----RRTVLLGAAPSVAATSAPLEVPDDPCWVLLSATGLL 523 >gi|290956919|ref|YP_003488101.1| GyrA-like gyrase subunit [Streptomyces scabiei 87.22] gi|260646445|emb|CBG69542.1| GyrA-like gyrase subunit [Streptomyces scabiei 87.22] Length = 818 Score = 369 bits (946), Expect = 2e-99, Method: Compositional matrix adjust. Identities = 205/523 (39%), Positives = 315/523 (60%), Gaps = 15/523 (2%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 EE + + + ++ +L YA S I RA+PD RDG KPVHRRI++ M+EMGL + Sbjct: 16 EERILDIDVVDEMQGSFLEYAYSVIYSRALPDARDGLKPVHRRIVYQMNEMGLRPDRGYV 75 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYT 132 K AR+VGEV+GKLHPHGD S+YD+LVRLAQPF R PL+ G GNFG++ + D AA RYT Sbjct: 76 KCARVVGEVMGKLHPHGDSSIYDALVRLAQPFSMRLPLVDGHGNFGSLGNDDPPAAMRYT 135 Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192 E RM L+ + ++E+ VDF Y+ ++ EPV P+ FPNLL NG SGIAVGMAT++P Sbjct: 136 ECRMADATSLMTESIEENTVDFSPNYDGQEQEPVALPAAFPNLLVNGASGIAVGMATNMP 195 Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252 HN+ E+ AA LI P ++ L++++ GPD PTGG IV I ++Y GRG F++ Sbjct: 196 PHNLGEVIAAARHLIRYPNADLDTLMKHVPGPDLPTGGRIV-GLSGIRDAYATGRGTFKI 254 Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD--ESAEDVR 310 RA V+ V ++VTE+P+ V ++I KI +L+ AK++ + D++D + A +R Sbjct: 255 RATVTVDNVTARRKGLIVTELPFTVGPEKVIAKIKDLVGAKKLQGIADVKDLTDRAHGLR 314 Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370 +V+ KN P+ ++E ++ L+ ME F +N L G+ P + L +L+ +L HR E Sbjct: 315 LVIEIKN-GFVPEAVLEQLYKLTPMEESFGINNVALVDGQ-PLTLGLKELLEVYLDHRFE 372 Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQ 427 V+ RRS FR R+ +++GLL A ++IDE+I +IR+ D + K ++ RF+L++ Q Sbjct: 373 VVRRRSEFRRGKRRDRLHLVEGLLTALVDIDEVIRLIRSSDNSAQAKERLIERFALSDIQ 432 Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487 IL+ LR L + + +++SE + L E ++ +L S + ++ E+ V + F Sbjct: 433 TQYILDTPLRRLTRFDRIELESEKEKLNTEIAELTRILESDAELRKLVSGELAAVAKKFG 492 Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI 530 RRT E S A + + +P V++S+ G + Sbjct: 493 TE-----RRTVLLESSGTQVAAV-PLQVADDPCRVLLSSTGLL 529 >gi|313665343|ref|YP_004047214.1| DNA topoisomerase IV, A subunit [Mycoplasma leachii PG50] gi|312949298|gb|ADR23894.1| DNA topoisomerase IV, A subunit [Mycoplasma leachii PG50] Length = 898 Score = 369 bits (946), Expect = 2e-99, Method: Compositional matrix adjust. Identities = 240/743 (32%), Positives = 420/743 (56%), Gaps = 41/743 (5%) Query: 24 FALEE----RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 + LEE R+ YA I+ERA+PD+RDG KPV RRI++AM+++ L F FKKSAR+V Sbjct: 10 YPLEELLGNRFSRYAKYIIQERALPDVRDGLKPVQRRILYAMNQLNLTFDKPFKKSARVV 69 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 GEVIGK HPHGD S+YD++VR++Q + PL+ QGN G+IDGDSAAA RYTEAR+T++ Sbjct: 70 GEVIGKYHPHGDSSIYDAMVRMSQWWKVNIPLVDMQGNNGSIDGDSAAAMRYTEARLTKI 129 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 + L+L+ ++++ V F +++ ++EP V PS FPN+L NG +GIA G AT++P HN+ EI Sbjct: 130 SNLLLEDLEKNTVVFAPNFDDSENEPTVLPSYFPNILVNGATGIAAGYATNMPPHNLSEI 189 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 +A + +I NP I+I+++L+ + GPDFPTG +I ++++ I E++ G+G + ++W E Sbjct: 190 IDATINIIKNPNITIDQILKIVKGPDFPTGAVI-QNKQGIREAFLTGKGKVIISSKWHQE 248 Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319 + IV+ EIPY+V K L++KI ++I +++IRDE+ ++ N Sbjct: 249 KNN-----IVIDEIPYEVVKQDLVKKIGDVIDNNPNLGIKEIRDETDRKGLRIVIELNEK 303 Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379 + + + + +F + + + N N++ + + P+ + L I+K +++H +EV +R+ F Sbjct: 304 ANLETVRKFLFKSTWLSVSYNYN-NIIIVDKQPKQLGLIDIIKAYISHYKEVFIKRTQFN 362 Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDKPKPV--MVSRFSLTENQVDAILNLRL 436 + + R+EI+ GL+ +DEII +IR +E++ + +V F T NQ AI+++RL Sbjct: 363 LNKANLRLEIVNGLIKTLSILDEIIKVIRKSENRLDAINNLVITFKFTTNQATAIVDMRL 422 Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496 L + ++ E L+ + +K +LN+ N+I + EVK+ F G +R Sbjct: 423 YRLTSTDVNKLLLEKTELIEKIKKYQEILNNSLVLDNEIISRLEEVKKQF------GIKR 476 Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD---LSALHFKEGDSLKI 553 + E D Q+ +I ++ I + IS G+I+ + ++ ++ LS+ K D Sbjct: 477 KSQVEDLVEDLDVDQKEVIIEKEINLWISKDGYIKVIDNNILNKNELSSFGKKPNDMWIS 536 Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQLLIDLNHNQDIVTAFV---- 607 D ++L+S Y++P + S + G I + N+ I+ A V Sbjct: 537 QGVCSNLDHLILISDQANYYSIPLYKISSSKWKDQGVHINSVATTQPNETIINALVIKEF 596 Query: 608 YDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTF--LKVSSEEKMKL--VVKVTGDHV 661 +ST LL+VS G +++ ++I K K+F +K+S ++ + +V + Sbjct: 597 INSTQHLLLVSKNG---LIKRTQISDLETKIFNKSFKIMKISDDDSLVYADLVSSKTSYC 653 Query: 662 AVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYN 720 +V +N + ++I+ IP S KGV+ + KD I + + + + I + +Y Sbjct: 654 CIVTKNGYAVRYNIEDIPIQSTISKGVKAANLKDDYIISALSLQNNKDV-LIFTNKNNYK 712 Query: 721 RSENDLLG-WLGKRGGVGSLVPK 742 R + +L+ ++ + G+ LV K Sbjct: 713 RLDQNLIPIYIRPKKGIRILVEK 735 >gi|322376409|ref|ZP_08050902.1| DNA topoisomerase IV, A subunit [Streptococcus sp. M334] gi|321282216|gb|EFX59223.1| DNA topoisomerase IV, A subunit [Streptococcus sp. M334] Length = 821 Score = 368 bits (945), Expect = 2e-99, Method: Compositional matrix adjust. Identities = 226/709 (31%), Positives = 398/709 (56%), Gaps = 33/709 (4%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 N++ +SL + ER+ Y+ I++RA+PD+RDG KPV RRI+++M++ G F +++KS Sbjct: 6 NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDGNTFDKSYRKS 65 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 A+ VG ++G HPHGD+S+YD++VR++Q + R L+ GN G++DGD AA RYTEAR Sbjct: 66 AKSVGNIMGNFHPHGDRSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 125 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 ++++A +LQ +D+ V F +++ + EP V P+ FPNLL NG++GI+ G AT IP HN Sbjct: 126 LSEIAGYLLQDIDKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 185 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 + E+ +AA+ +ID+P ++KL+E++ GPDFPTGGII + R+ I ++Y G+G VR++ Sbjct: 186 LAEVIDAAVYMIDHPTAKVDKLMEFLPGPDFPTGGII-QGRDEIKKAYETGKGRVVVRSK 244 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315 +E++ G IV+TEIPY++ K+ L++KI ++ + ++ + ++RDES D + Sbjct: 245 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 304 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 + + +L++ +F +D++ + NM + P+ + + IL ++AHRREV+ R Sbjct: 305 LKKEANTELVLNYLFKYTDLQINYNFNMVAID-NFTPRQVGIVPILSSYIAHRREVILAR 363 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432 S F + ++R+ I++GL+ +DE+IA+IR N+ K + + TE Q +AI+ Sbjct: 364 SRFDKENAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIV 423 Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492 L+L L + ++ E L + + +++ + +N + E+REVK+ F+ Sbjct: 424 TLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP--- 480 Query: 493 GRRRTTFCEVSRA---DKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FK 546 R +T + ++A D A+L I +E V ++ G+I+ S S L + Sbjct: 481 --RLSTLEDTAKAIEIDTASL----IAEEDAYVSVTKAGYIKRTSPRSFAASTLEEIGKR 534 Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIV 603 + D L A TT +L+ ++ G P L R GE + Q + + N++I+ Sbjct: 535 DDDRLIFVQAAKTTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEIL 594 Query: 604 TAFV---YDSTCKLLVVSSKGNAFIVEESEIIA-NTRKGKT--FLKVSSE-EKMKLVVKV 656 V +D + G VE E T K K+ + K+ E +++ V + Sbjct: 595 YVEVVDQFDDATTYFAATRLGQIKRVERKEFSPWRTYKSKSVKYAKLKDETDQIVAVAPI 654 Query: 657 TGDHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDGGI--SDVIC 702 D V ++ N L F+I+++P + ++ GV+ + K+ S IC Sbjct: 655 KLDDVLLISLNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDTLQSAFIC 703 >gi|315150487|gb|EFT94503.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX0012] Length = 823 Score = 368 bits (945), Expect = 2e-99, Method: Compositional matrix adjust. Identities = 210/618 (33%), Positives = 366/618 (59%), Gaps = 19/618 (3%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 + V+ ++L + +R+ Y+ I+ERA+PD+RDG KPV RRI+ +M++ G F F+K Sbjct: 8 QEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFSMNKDGNTFDKGFRK 67 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 SA+ VG ++G HPHGD S+Y+++VRL+Q + R LI GN G++DGD AA RYTEA Sbjct: 68 SAKSVGNIMGNYHPHGDSSIYEAMVRLSQDWKLREVLIEMHGNNGSMDGDPPAAMRYTEA 127 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 R++Q++ +L+ +D++ VDF +++ + EP V P+K+PNLL NG++GI+ G AT IP+H Sbjct: 128 RLSQLSGELLKDIDKNTVDFVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATEIPTH 187 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 N+ EI + + LID+P S+EKL+EYI GPDFPTGGI+ + + I ++Y GRG +RA Sbjct: 188 NLAEIIDGTVYLIDHPNASLEKLMEYIPGPDFPTGGIL-QGKAEIKKAYETGRGKVILRA 246 Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314 + +E + G IV++EIPY+V K+ L++K+ E+ + K++ + ++RDES ++ Sbjct: 247 KTKIEPLKGGKQQIVISEIPYEVNKATLVKKMDEIRLNKKVDGIAEVRDESDRTGLQIVV 306 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 + ++ + ++ +F ++++ + NM + PQ + L IL+ ++ HR+ V+ Sbjct: 307 ELKKDVNAEGILNYLFKNTELQINYNFNMVAID-NMTPQQVGLKRILESYITHRKSVIIN 365 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDK--PKPVMVSRFSLTENQVDAI 431 R F + +R I+ GL+ A +D++IA IR ++DK K +VS ++ TE Q +AI Sbjct: 366 RCQFELDKARKREHIVAGLIKALSILDKVIATIRGSKDKKDAKKNLVSDYAFTEEQAEAI 425 Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491 + L+L L + ++ E L + ++ ++LN+ K+ ++ + E+REVK+ + Sbjct: 426 VTLQLYRLTNTDITDLQEEAKTLEQQIAELLNILNNEKELFSVMKKELREVKKQY----- 480 Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSVDL-SALHFKEG 548 G R T E + ++ +E + V +++ G+I+ +++S++ + KEG Sbjct: 481 -GNPRLTQIEEEIQEIKIETAVLVAQEDVVVTVTHEGYIKRSNIRSYTASKPEEIGMKEG 539 Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAI-QLLIDLNHNQDIVTA 605 D L A +T D +LL++ G P L L + GE I Q +++L ++ I+ Sbjct: 540 DFLLYAGEVNTLDHLLLVTNKGNMIYRPVHELPDLRWKEIGEHISQTILNLAIDESIIAV 599 Query: 606 FVYD--STCKLLVVSSKG 621 + Y S K V +K Sbjct: 600 YPYKELSPTKTFVFITKA 617 >gi|257082501|ref|ZP_05576862.1| DNA topoisomerase IV subunit A [Enterococcus faecalis E1Sol] gi|256990531|gb|EEU77833.1| DNA topoisomerase IV subunit A [Enterococcus faecalis E1Sol] Length = 820 Score = 368 bits (945), Expect = 2e-99, Method: Compositional matrix adjust. Identities = 211/618 (34%), Positives = 365/618 (59%), Gaps = 19/618 (3%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 + V+ ++L + +R+ Y+ I+ERA+PD+RDG KPV RRI+ +M++ G F F+K Sbjct: 5 QEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFSMNKDGNTFDKGFRK 64 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 SA+ VG ++G HPHGD S+Y+++VRL+Q + R LI GN G++DGD AA RYTEA Sbjct: 65 SAKSVGNIMGNYHPHGDSSIYEAMVRLSQDWKLREVLIEMHGNNGSMDGDPPAAMRYTEA 124 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 R++Q++ +L+ +D++ VDF +++ + EP V P+K+PNLL NG++GI+ G AT IP+H Sbjct: 125 RLSQLSGELLKDIDKNTVDFVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATEIPTH 184 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 N+ EI + + LID P S+EKL+EYI GPDFPTGGI+ + + I ++Y GRG +RA Sbjct: 185 NLAEIIDGTVYLIDYPNASLEKLMEYIPGPDFPTGGIL-QGKAEIKKAYETGRGKVILRA 243 Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314 + +E + G IV++EIPY+V K+ L++K+ E+ + K++ + ++RDES ++ Sbjct: 244 KTKIEPLKGGKQQIVISEIPYEVNKATLVKKMDEIRLNKKVDGIAEVRDESDRTGLQIVV 303 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 + ++ + ++ +F ++++ + NM + PQ + L IL+ ++ HR+ V+ Sbjct: 304 ELKKDVNAEGILNYLFKNTELQINYNFNMVAID-NMTPQQVGLKRILESYITHRKSVIIN 362 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDK--PKPVMVSRFSLTENQVDAI 431 R F + +R I+ GL+ A +D++IA IR ++DK K +VS ++ TE Q +AI Sbjct: 363 RCQFELDKARKREHIVAGLIKALSILDKVIATIRGSKDKKDAKKNLVSDYAFTEEQAEAI 422 Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491 + L+L L + ++ E L + ++ ++LN+ K+ ++ + E+REVK+ + Sbjct: 423 VTLQLYRLTNTDITDLQEEAKTLEQQIAELLNILNNEKELFSVMKKELREVKKQY----- 477 Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSVDL-SALHFKEG 548 G R T E + ++ +E + V +++ G+I+ S++S++ + KEG Sbjct: 478 -GNPRLTQIEEEIQEIKIETAVLVAQEDVVVTVTHEGYIKRSSIRSYTASKPEEIGMKEG 536 Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAI-QLLIDLNHNQDIVTA 605 D L A +T D +LL++ G P L L + GE I Q +++L ++ I+ Sbjct: 537 DFLLYAGEVNTLDHLLLVTNKGNMIYRPVHELPDLRWKEIGEHISQTILNLAIDESIIAV 596 Query: 606 FVYD--STCKLLVVSSKG 621 + Y S K V +K Sbjct: 597 YPYKELSPTKTFVFITKA 614 >gi|299140968|ref|ZP_07034106.1| DNA gyrase, A subunit [Prevotella oris C735] gi|298577934|gb|EFI49802.1| DNA gyrase, A subunit [Prevotella oris C735] Length = 867 Score = 368 bits (945), Expect = 2e-99, Method: Compositional matrix adjust. Identities = 237/732 (32%), Positives = 388/732 (53%), Gaps = 61/732 (8%) Query: 6 ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65 + + T+ + + +++ ++ Y+ Y++S I RA+PD+RDGFKPVHRRI++ M +G Sbjct: 1 MDENQTIDNDRILKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMLGIG 60 Query: 66 LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125 +KK AR+VGEV+GK HPHGD SVY +LVR+ Q + RY L+ GQGNFG+IDGDS Sbjct: 61 NTSDKPYKKCARVVGEVLGKYHPHGDASVYGALVRMGQDWNMRYTLVDGQGNFGSIDGDS 120 Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185 AA RYTE R++++ E ++ +++D VD + +++ EP V P+K PNLL NG +GIAV Sbjct: 121 PAAMRYTECRLSKMGEHVMDDLEKDTVDMANNFDDTLIEPSVMPTKIPNLLVNGGNGIAV 180 Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245 GMAT+IP+HN++E+ + A IDNP+I ++ L++YI PDFPTG I + + ++Y Sbjct: 181 GMATNIPTHNLREVIDGCCAYIDNPDIELDGLMQYIKAPDFPTGAYIY-GIQGVRQAYET 239 Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305 GRG +RA+ +E IVVTEIPY V K LIE IA+L+ RI + + DES Sbjct: 240 GRGRIVMRAKAEIES-DESHDKIVVTEIPYGVNKQLLIENIADLVKEGRIDGISNANDES 298 Query: 306 A-EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364 + +RIV+ K R + ++++ +F ++ +++ F +N L GR P+++ L +K + Sbjct: 299 GRQGMRIVIDVK-RDANANVILNKLFKMTALQSSFSVNCIALVKGR-PRLLSLKECVKYF 356 Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRF 421 + HR +V RR+ + ++ R IL+GL+IA NIDE++ IIR P + RF Sbjct: 357 VEHRHDVTIRRTKYDLKKAQERAHILEGLIIACDNIDEVVHIIRASKTPADAQRNLEERF 416 Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481 +L E Q AI+++RL L L Q+ +E + L + +L+ + + E+ E Sbjct: 417 NLDELQSKAIVDMRLSQLTGLRMDQLHAEYEELERQIAYFQQILDDPELCKKVMKDELNE 476 Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL-------- 533 VK+ + RRT E+ + + + +P+ + +S+ G+I+ Sbjct: 477 VKDKYGDE-----RRT---EIKYSSEEFNPEDFYPNDPVVITVSHMGYIKRTPLSEFHEQ 528 Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQ 591 V +E D + A +L + G+ Y L + G G AIQ Sbjct: 529 ARGGVGAKGARHREQDFTEFIYPATMHQTMLFFTKKGRCYWLKCFEIPEGDRNSKGRAIQ 588 Query: 592 LLIDLNHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG---KTFLKVSSEE 648 ++++ + D+ +L +++ + +I T+ G KT L+ S Sbjct: 589 NMLNIESD---------DAINAILRLTTLTDEIFNNSHYVIFATKNGTVKKTSLEAYSRP 639 Query: 649 KMKLVVKVT---GDHVAVV------------GENRKLLIFSIDQIPEMSRG----KGVRL 689 + V+ + GD V V N + + F+ + I M R +G+RL Sbjct: 640 RANGVIAINIADGDEVVDVRLTNGRNELIMANRNGRAVRFNENTIRTMGRTATGVRGMRL 699 Query: 690 QSYKDGGISDVI 701 DGG +V+ Sbjct: 700 ----DGGDDEVV 707 >gi|317125073|ref|YP_004099185.1| DNA topoisomerase IV subunit A [Intrasporangium calvum DSM 43043] gi|315589161|gb|ADU48458.1| DNA topoisomerase IV subunit A [Intrasporangium calvum DSM 43043] Length = 818 Score = 368 bits (945), Expect = 2e-99, Method: Compositional matrix adjust. Identities = 240/719 (33%), Positives = 391/719 (54%), Gaps = 46/719 (6%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 EE + + + ++ +L Y+ S I RA+PD RDG KPV RRI++ +E+G+ Sbjct: 15 EEKIVGIDVEEEMQNAFLEYSYSVIYSRALPDARDGLKPVQRRILYGANELGVRPDRGHV 74 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KS RIVGEV+GK HPHGD ++YD+LVR+AQPF R PLI G GNFG++D D AA RYTE Sbjct: 75 KSQRIVGEVMGKYHPHGDTAIYDALVRMAQPFTLRLPLIDGHGNFGSLD-DGPAAARYTE 133 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 AR+ + A L++ G+DE+ VDF Y++ +P V P+ FPNLL NG SGIAVGMAT++ Sbjct: 134 ARLAESALLMVSGLDENTVDFVPNYDDTQYQPEVLPAAFPNLLVNGASGIAVGMATNMAP 193 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E+ AA LI NP S+++L++++ GPD P GG IV E I ++Y GRG FR R Sbjct: 194 HNLIEVIGAARHLIANPSCSLDELMKFVPGPDLPGGGRIV-GLEGIRDAYLTGRGSFRTR 252 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES--AEDVRI 311 A +E + IVVTE+PY V ++IEKI +L+ +K++ + D++D S +R+ Sbjct: 253 ATARIENITPRRKGIVVTELPYLVGPEKVIEKIRDLVQSKKLQGISDLKDLSDRGHGLRL 312 Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371 V+ KN +PD ++E ++ L+ ME F +N L G+ P+ + L +L+ ++ R +V Sbjct: 313 VIEVKN-GFNPDAVLEQLYRLTPMEENFGINNVALVEGQ-PRTLGLKQLLQVYVDFRTDV 370 Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQV 428 + RR+ R+ + R+ +++GLLIA ++IDE+I +IR+ D K ++ F L++ Q Sbjct: 371 VRRRTEHRLAKREERLHLVEGLLIAIVDIDEVIQVIRSSDDAATAKTRLMDVFDLSDPQA 430 Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488 IL+L+LR L + +++SE L + E++ +LL S + ++ E+ EV + Sbjct: 431 TYILDLQLRRLTRFSRIELESEKSELERQIEELRALLESDRLLLKLVSTELAEVAKKHGT 490 Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIE--KEPITVVISNRGWI-RSLKSHSVDLSALHF 545 RRT E S + T +E +P V++S+ G + R++ V Sbjct: 491 P-----RRTVLLESSGQARPTTTATPLEITDDPCWVLLSSTGLLARTVGPEPVTAEGSRS 545 Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAY--------TLPAGNLLSGRGHGEAIQLLIDLN 597 + D+L A+ + L++T G+ TLP N G G + +DL Sbjct: 546 RH-DALVGAVRTTARGELGLVTTSGRMVRLSALELPTLPPTNGAPSLGGGAPLAAYVDLA 604 Query: 598 HNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT 657 +++ +T + ++ + + + +T KG + +S ++ ++V Sbjct: 605 KDEEPLTIVPIGAEAPVVALGTASGVV----KRVSPDTPKGTDWSLISLKDGDRVVGAAV 660 Query: 658 GDH----VAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICFKICEGLTWI 712 D + + + +LL F+ K VR Q GG++ V K+ G + + Sbjct: 661 ADRDDLDLVFITSDAQLLRFA---------AKTVRPQGRSAGGMAGV---KLAAGASAV 707 >gi|253682593|ref|ZP_04863390.1| DNA gyrase subunit A [Clostridium botulinum D str. 1873] gi|253562305|gb|EES91757.1| DNA gyrase subunit A [Clostridium botulinum D str. 1873] Length = 970 Score = 368 bits (945), Expect = 2e-99, Method: Compositional matrix adjust. Identities = 213/598 (35%), Positives = 355/598 (59%), Gaps = 25/598 (4%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 + N+ S+ + E YL YA+ KERA+PD+RDG KPVHRRI++ ++ + Sbjct: 11 DNNIIKTSISEVMPENYLPYAVEVAKERALPDVRDGLKPVHRRILYGAYKLKATPDKPYY 70 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSARIVG+++GK HPHGD SVYD++V LAQ F R PLI G GN+G+IDGD+AAA RYTE Sbjct: 71 KSARIVGDILGKYHPHGDTSVYDAMVILAQDFTTRIPLIDGHGNWGSIDGDNAAAMRYTE 130 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 AR+T A +L+ +D+D VD Y++ + EP V P++FPNLL NG GIAVG+AT+IP Sbjct: 131 ARLTNPALEMLRDIDKDVVDMVSNYSDTELEPKVLPARFPNLLVNGAFGIAVGLATNIPP 190 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN++E +A +A IDN +IS ++L+ YI GPD PTGGII+ ++++ +Y G G +R Sbjct: 191 HNLRESIDATVAYIDNNDISTKELMNYIKGPDLPTGGIII-GEQALLSAYEKGEGRVTLR 249 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR----IPLLEDIRDESAED- 308 A+ +E++ + I++ E PY+ KS++++ I+E+ K+ + + DIRDES + Sbjct: 250 AKTSIEKLENDRYGIIIKEFPYRKNKSKILQTISEMTADKKHSKALENITDIRDESDRNG 309 Query: 309 VRIVL-FPKNRSLD-PDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366 +R V+ F K+ SL+ + +++ +F ++++ NM ++ G+ P+ + L ILK ++ Sbjct: 310 IRAVIEFKKSASLEVVERVLKYLFKKTELQCNISFNMVAIADGK-PETLGLKAILKYYVE 368 Query: 367 HRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSL 423 H++EV+ RRS ++ +R I++G + A +D+I+ IR+ K +V++F Sbjct: 369 HQKEVVIRRSEKELEIAKKRFHIVEGFIKAIDIMDKILDTIRSSKSKKDSEQNLVNKFGF 428 Query: 424 TENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVK 483 + Q AI+ L L L LE + E NL E + ++ +L+S K+ + + E+ EVK Sbjct: 429 SMEQAQAIVELMLYKLTGLEIKVFEKEYKNLEKEIKALEKILSSEKELFKVVKKELEEVK 488 Query: 484 EIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSH-----SV 538 E + RRT K +++ +++ E I + +SN G+I+ + + Sbjct: 489 EKYGDP-----RRTEIVHDDEQAKIDIEELILD-EDIVITLSNEGYIKRVADKYYRRINP 542 Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLI 594 + + ++EGD L+ +T D +++ + +G Y + N+ + + GE + LI Sbjct: 543 KVEDIEYREGDFNTYLLNGNTKDNMMIFTDEGNLYQIRISNIPEMKWKEKGERLDTLI 600 >gi|227494194|ref|ZP_03924510.1| DNA topoisomerase (ATP-hydrolyzing) [Actinomyces coleocanis DSM 15436] gi|226831928|gb|EEH64311.1| DNA topoisomerase (ATP-hydrolyzing) [Actinomyces coleocanis DSM 15436] Length = 873 Score = 368 bits (945), Expect = 2e-99, Method: Compositional matrix adjust. Identities = 221/587 (37%), Positives = 328/587 (55%), Gaps = 40/587 (6%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 + V + ++ YLAYA+S I RA+P++RDG KPVHRRI++AM + G A F K Sbjct: 30 INYVDIEAEMQNSYLAYAMSVIVGRALPEVRDGLKPVHRRILYAMYDGGFRPNAGFYKCM 89 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+V+ K HPHGD +VYD+L RL QP+ RYPLI+GQGNFG+ AA RYTE +M Sbjct: 90 RVVGDVLAKFHPHGDTAVYDALARLVQPWSLRYPLIAGQGNFGSPGNLGPAAPRYTECKM 149 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 +A +++ +DE+ VDF D Y+ D EPVV P++FPNLL NG+ GIAVGMAT IP HN+ Sbjct: 150 APLAMEMVRDIDENTVDFVDNYDGRDQEPVVLPARFPNLLVNGSEGIAVGMATRIPPHNL 209 Query: 197 QEICEAALALIDNPEISIEKLLEYII----GPDFPTGGIIVESRESIVESYRLGRGGFRV 252 +E+ E +D+PE S E+LL +I GPDFPTG I+ + +I + YR GRG Sbjct: 210 REVAEGVQWYLDHPEASREELLNALIGIVKGPDFPTGATIL-GKTAIEQVYRTGRGSIIQ 268 Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE--DVR 310 RA +EE+ + C+VVTE PYQV L KIA+L+ + + DIRDE+++ R Sbjct: 269 RAVVNIEEI-QNRQCLVVTEFPYQVNPDNLALKIAQLVKDGALAGIADIRDETSDRSGQR 327 Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370 +V+ K R +++ +++ +D+++ FP NM L G VP+ + LDG + W+ H+ E Sbjct: 328 LVIVLK-RDAVAKVVLNNLYKRTDLQSSFPANMLALVDG-VPRTLSLDGFVHYWVKHQVE 385 Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSL---TENQ 427 V+ RR+ FR++ R+ IL+G L A +DE+IA+IR + V L E Q Sbjct: 386 VIIRRTQFRLEKAKERLHILEGYLKALDALDEVIALIRRSPTVEDARVGLMDLLKIDEVQ 445 Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487 DAIL ++LR L LE +I E L+ + ++ ++ + +Q + E+ E+ E F Sbjct: 446 ADAILAMQLRRLAALERQKILDEHAQLVEKVRDLEDIIATPARQRAIVGEELAEIVERFG 505 Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKE 547 RRT + + +I +E + V I+ G+ + + VD + Sbjct: 506 DE-----RRTAIVPF---NGEMTDEDLIPEEEVVVTITRDGYAKRTR---VDNYKAQHRG 554 Query: 548 GDSLKIA----------LHAHTTDRILLLSTD------GKAYTLPAG 578 G ++ A TT LL T+ K Y +P G Sbjct: 555 GKGVRGAKLRQDDVVEHFFVTTTHHWLLFFTNLGRVYRAKGYEIPEG 601 >gi|307273175|ref|ZP_07554421.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX0855] gi|306510160|gb|EFM79184.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX0855] Length = 823 Score = 368 bits (945), Expect = 2e-99, Method: Compositional matrix adjust. Identities = 210/618 (33%), Positives = 366/618 (59%), Gaps = 19/618 (3%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 + V+ ++L + +R+ Y+ I+ERA+PD+RDG KPV RRI+ +M++ G F F+K Sbjct: 8 QEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFSMNKDGNTFDKGFRK 67 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 SA+ VG ++G HPHGD S+Y+++VRL+Q + R LI GN G++DGD AA RYTEA Sbjct: 68 SAKSVGNIMGNYHPHGDSSIYEAMVRLSQDWKLREVLIEMHGNNGSMDGDPPAAMRYTEA 127 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 R++Q++ +L+ ++++ VDF +++ + EP V P+K+PNLL NG++GI+ G AT IP+H Sbjct: 128 RLSQLSGELLKDIEKNTVDFVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATEIPTH 187 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 N+ EI + + LID+P S+EKL+EYI GPDFPTGGI+ + + I ++Y GRG +RA Sbjct: 188 NLAEIIDGTVYLIDHPNASLEKLMEYIPGPDFPTGGIL-QGKAEIKKAYETGRGKVILRA 246 Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314 + +E + G IV++EIPY+V K+ L++K+ E+ + K++ + ++RDES ++ Sbjct: 247 KTKIEPLKGGKQQIVISEIPYEVNKATLVKKMDEIRLNKKVDGIAEVRDESDRTGLQIVV 306 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 + ++ + ++ +F ++++ + NM + PQ + L IL+ ++ HR+ V+ Sbjct: 307 ELKKDVNAEGILNYLFKNTELQINYNFNMVAID-NMTPQQVGLKRILESYITHRKSVIIN 365 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDK--PKPVMVSRFSLTENQVDAI 431 R F + +R I+ GL+ A +D++IA IR ++DK K +VS ++ TE Q +AI Sbjct: 366 RCQFELDKARKREHIVAGLIKALSILDKVIATIRGSKDKKDAKKNLVSDYAFTEEQAEAI 425 Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491 + L+L L + ++ E L + ++ ++LN+ K+ ++ + E+REVK+ + Sbjct: 426 VTLQLYRLTNTDITDLQEEAKTLEQQIAELLNILNNEKELFSVMKKELREVKKQY----- 480 Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSVDL-SALHFKEG 548 G R T E + ++ +E + V +++ G+I+ S++S++ + KEG Sbjct: 481 -GNPRLTQIEEEIQEIKIETAVLVAQEDVVVTVTHEGYIKRSSIRSYTASKPEEIGMKEG 539 Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAI-QLLIDLNHNQDIVTA 605 D L A +T D +LL++ G P L L + GE I Q +++L ++ I+ Sbjct: 540 DFLLYAGEVNTLDHLLLVTNKGNMIYRPVHELPDLRWKEIGEHISQTILNLAIDESIIAV 599 Query: 606 FVYD--STCKLLVVSSKG 621 + Y S K V +K Sbjct: 600 YPYKELSPTKTFVFITKA 617 >gi|41406104|ref|NP_958940.1| DNA gyrase subunit A [Mycobacterium avium subsp. paratuberculosis K-10] gi|41394452|gb|AAS02323.1| GyrA [Mycobacterium avium subsp. paratuberculosis K-10] Length = 839 Score = 368 bits (945), Expect = 2e-99, Method: Compositional matrix adjust. Identities = 216/584 (36%), Positives = 336/584 (57%), Gaps = 33/584 (5%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 + V+ V ++ ++ Y+ YA+S I RA+P++RDG KPVHRR+++AM + G + K Sbjct: 14 DRVEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAMYDSGFRPDRSHAK 73 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 SAR V E +G HPHGD S+YD+LVR+AQP+ RYPL+ GQGNFG+ D AA RYTEA Sbjct: 74 SARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSPGNDPPAAMRYTEA 133 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 R+T +A +L+ +DE+ VDF Y+ EP V PS+FPNLLANG+ GIAVGMAT+IP H Sbjct: 134 RLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSGGIAVGMATNIPPH 193 Query: 195 NVQEICEAALALIDN----PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250 N+ E+ EA +DN E ++ ++E + GPDFPT G+IV + + I ++Y+ GRG Sbjct: 194 NLGELAEAVFWALDNYEADEEATLAAVMERVKGPDFPTSGLIVGT-QGIADAYKTGRGSI 252 Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV- 309 R+R VEE RG +V+TE+PYQV I IAE + ++ + +I D+S++ V Sbjct: 253 RMRGVVEVEEDSRGRTSLVITELPYQVNHDNFITSIAEQVRDGKLAGISNIEDQSSDRVG 312 Query: 310 -RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368 RIV+ K R +++ +++ + ++T F NM + G VP+ + LD +++ ++ H+ Sbjct: 313 LRIVIELK-RDAVAKVVLNNLYKHTQLQTSFGANMLAIVDG-VPRTLRLDQLIRHYVDHQ 370 Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTE 425 +V+ RR+++R++ + R IL+GL+ A +DE+IA+IR D + ++ + E Sbjct: 371 LDVIVRRTTYRLRKANERAHILRGLVKALDALDEVIALIRASETVDIARQGLIELLDIDE 430 Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485 Q AIL+++LR L LE +I +L + AE ++ +L ++Q + E+ EI Sbjct: 431 IQAQAILDMQLRRLAALERQRIIDDLAKIEAEIADLEDILAKPERQRGIVRDEL---AEI 487 Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHS 537 K D R R + AD + +I +E + V I+ G+ RS K Sbjct: 488 VEKHGDARRTR-----IVAADGDVSDEDLIAREDVVVTITETGYAKRTKTDLYRSQKRGG 542 Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLP 576 + + D ++ T D IL +T G KAY LP Sbjct: 543 KGVQGAGLNQDDIVRHFFVCSTHDWILFFTTQGRVYRAKAYELP 586 >gi|315145097|gb|EFT89113.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX2141] Length = 823 Score = 368 bits (945), Expect = 2e-99, Method: Compositional matrix adjust. Identities = 210/618 (33%), Positives = 366/618 (59%), Gaps = 19/618 (3%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 + V+ ++L + +R+ Y+ I+ERA+PD+RDG KPV RRI+ +M++ G F F+K Sbjct: 8 QEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFSMNKDGNTFDKGFRK 67 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 SA+ VG ++G HPHGD S+Y+++VRL+Q + R LI GN G++DGD AA RYTEA Sbjct: 68 SAKSVGNIMGNYHPHGDSSIYEAMVRLSQDWKLREVLIEMHGNNGSMDGDPPAAMRYTEA 127 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 R++Q++ +L+ +D++ VDF +++ + EP V P+K+PNLL NG++GI+ G AT IP+H Sbjct: 128 RLSQLSGELLKDIDKNTVDFVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATEIPTH 187 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 N+ EI + + LID+P S+EKL+EYI GPDFPTGGI+ + + I ++Y GRG +RA Sbjct: 188 NLAEIIDGTVYLIDHPNASLEKLMEYIPGPDFPTGGIL-QGKAEIKKAYETGRGKVILRA 246 Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314 + +E + G IV++EIPY+V K+ L++K+ E+ + K++ + ++RDES ++ Sbjct: 247 KTKIEPLKGGKQQIVISEIPYEVNKATLVKKMDEIRLNKKVDGIAEVRDESDRTGLQIVV 306 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 + ++ + ++ +F ++++ + NM + PQ + L IL+ ++ HR+ V+ Sbjct: 307 ELKKDVNAEGILNYLFKNTELQINYNFNMVAID-NMTPQQVGLKRILESYITHRKSVIIN 365 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDK--PKPVMVSRFSLTENQVDAI 431 R F + +R I+ GL+ A +D++IA IR ++DK K +VS ++ TE Q +AI Sbjct: 366 RCQFELDKARKREHIVAGLIKALSILDKVIATIRGSKDKKDAKKNLVSDYAFTEEQAEAI 425 Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491 + L+L L + ++ E L + ++ ++LN+ K+ ++ + E+REVK+ + Sbjct: 426 VTLQLYRLTNTDITDLQEEAKTLEQQIAELLNILNNEKELFSVMKKELREVKKQY----- 480 Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSVDL-SALHFKEG 548 G R T E + ++ +E + V +++ G+I+ +++S++ + KEG Sbjct: 481 -GNPRLTQIEEEIQEIKIETAVLVAQEDVVVTVTHEGYIKRSNIRSYTASKPEEIGMKEG 539 Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAI-QLLIDLNHNQDIVTA 605 D L A +T D +LL++ G P L L + GE I Q +++L ++ I+ Sbjct: 540 DFLLYAGEVNTLDHLLLVTNKGNMIYRPVHELPDLRWKEIGEHISQTILNLAIDESIIAV 599 Query: 606 FVYD--STCKLLVVSSKG 621 + Y S K V +K Sbjct: 600 YPYKELSPTKTFVFITKA 617 >gi|315155703|gb|EFT99719.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX0043] Length = 823 Score = 368 bits (944), Expect = 2e-99, Method: Compositional matrix adjust. Identities = 210/618 (33%), Positives = 366/618 (59%), Gaps = 19/618 (3%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 + V+ ++L + +R+ Y+ I+ERA+PD+RDG KPV RRI+ +M++ G F F+K Sbjct: 8 QEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFSMNKDGNTFDKGFRK 67 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 SA+ VG ++G HPHGD S+Y+++VRL+Q + R LI GN G++DGD AA RYTEA Sbjct: 68 SAKSVGNIMGNYHPHGDSSIYEAMVRLSQDWKLREVLIEMHGNNGSMDGDPPAAMRYTEA 127 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 R++Q++ +L+ ++++ VDF +++ + EP V P+K+PNLL NG++GI+ G AT IP+H Sbjct: 128 RLSQLSGELLKDIEKNTVDFVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATEIPTH 187 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 N+ EI + + LID+P S+EKL+EYI GPDFPTGGI+ + + I ++Y GRG +RA Sbjct: 188 NLAEIIDGTVYLIDHPNASLEKLMEYIPGPDFPTGGIL-QGKAEIKKAYETGRGKVILRA 246 Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314 + +E + G IV++EIPY+V K+ L++K+ E+ + K++ + ++RDES ++ Sbjct: 247 KTKIEPLKGGKQQIVISEIPYEVNKATLVKKMDEIRLNKKVDGIAEVRDESDRTGLQIVV 306 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 + ++ + ++ +F ++++ + NM + PQ + L IL+ ++ HR+ V+ Sbjct: 307 ELKKDVNAEGILNYLFKNTELQINYNFNMVAID-NMTPQQVGLKRILESYITHRKSVIIN 365 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDK--PKPVMVSRFSLTENQVDAI 431 R F + +R I+ GL+ A +D++IA IR ++DK K +VS ++ TE Q +AI Sbjct: 366 RCQFELDKARKREHIVAGLIKALSILDKVIATIRGSKDKKDAKKNLVSDYAFTEEQAEAI 425 Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491 + L+L L + ++ E L + ++ ++LN+ K+ ++ + E+REVK+ + Sbjct: 426 VTLQLYRLTNTDITDLQEEAKTLEQQIAELLNILNNEKELFSVMKKELREVKKQY----- 480 Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSVDL-SALHFKEG 548 G R T E + ++ +E + V +++ G+I+ S++S++ + KEG Sbjct: 481 -GNPRLTQIEEEIQEIKIETAVLVAQEDVVVTVTHEGYIKRSSIRSYTASKPEEIGMKEG 539 Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAI-QLLIDLNHNQDIVTA 605 D L A +T D +LL++ G P L L + GE I Q +++L ++ I+ Sbjct: 540 DFLLYAGEVNTLDHLLLVTNKGNMIYRPVHELPDLRWKEIGEHISQTILNLAIDESIIAV 599 Query: 606 FVYD--STCKLLVVSSKG 621 + Y S K V +K Sbjct: 600 YPYKELSPTKTFVFITKA 617 >gi|307703562|ref|ZP_07640504.1| DNA topoisomerase IV, A subunit [Streptococcus oralis ATCC 35037] gi|307622969|gb|EFO01964.1| DNA topoisomerase IV, A subunit [Streptococcus oralis ATCC 35037] Length = 814 Score = 368 bits (944), Expect = 2e-99, Method: Compositional matrix adjust. Identities = 224/697 (32%), Positives = 392/697 (56%), Gaps = 33/697 (4%) Query: 28 ERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLH 87 ER+ Y+ I++RA+PD+RDG KPV RRI+++M++ G F +++KSA+ VG ++G H Sbjct: 3 ERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDGNTFDKSYRKSAKSVGNIMGNFH 62 Query: 88 PHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGV 147 PHGD S+YD++VR++Q + R L+ GN G++DGD AA RYTEAR++++A +LQ + Sbjct: 63 PHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDI 122 Query: 148 DEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALI 207 ++ V F +++ + EP V P+ FPNLL NG++GI+ G AT IP HN+ E+ +A + +I Sbjct: 123 EKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHNLAEVIDATVYMI 182 Query: 208 DNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWC 267 D+P ++KL+E++ GPDFPTGGII + R+ I ++Y G+G VR++ +E++ G Sbjct: 183 DHPTAKVDKLMEFLPGPDFPTGGII-QGRDEIKKAYETGKGRVVVRSKTEIEKLKGGKEQ 241 Query: 268 IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLME 327 IV+TEIPY++ K+ L++KI ++ + ++ + ++RDES D + + + +L++ Sbjct: 242 IVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIELKKDANTELVLN 301 Query: 328 SIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRV 387 +F +D++ + NM + P+ + + IL ++AHRREV+ RS F + ++R+ Sbjct: 302 YLFKYTDLQINYNFNMVAID-NFTPRQVGIVPILSSYIAHRREVILARSRFDKEKAEKRL 360 Query: 388 EILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEE 444 I++GL+ +DE+IA+IR N+ K + + TE Q +AI+ L+L L + Sbjct: 361 HIVEGLIRVISILDEVIALIRASENKADAKENLKVSYEFTEEQAEAIVTLQLYRLTNTDV 420 Query: 445 YQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSR 504 ++ E L + + +++ + +N + E+REVK+ F+ R +T + ++ Sbjct: 421 VVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP-----RLSTLEDTAK 475 Query: 505 A---DKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FKEGDSLKIALHAH 558 A D A+L I +E V ++ G+I+ S S L ++ D L A Sbjct: 476 AIEIDTASL----IAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKRDDDRLIFVQSAK 531 Query: 559 TTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIVTAFV---YDSTC 612 TT +L+ +T G P L R GE + Q + + N++I+ A V +D Sbjct: 532 TTQHLLMFTTLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEILYAEVVDQFDDAT 591 Query: 613 KLLVVSSKGNAFIVEESEIIA-NTRKGKT--FLKVSSE-EKMKLVVKVTGDHVAVVGENR 668 V + G VE E T K K+ + K+ E +++ V + D V ++ +N Sbjct: 592 TYFVATRLGQIKRVERKEFSPWRTYKSKSVKYAKLKDETDQIVAVAPIKLDDVLLISQNG 651 Query: 669 KLLIFSIDQIPEM-SRGKGVRLQSYK--DGGISDVIC 702 L F+I+++P + ++ GV+ + K D + IC Sbjct: 652 YALRFNIEEVPVVGAKATGVKAMNLKADDALQAAFIC 688 >gi|311112566|ref|YP_003983788.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Rothia dentocariosa ATCC 17931] gi|310944060|gb|ADP40354.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Rothia dentocariosa ATCC 17931] Length = 879 Score = 368 bits (944), Expect = 2e-99, Method: Compositional matrix adjust. Identities = 202/529 (38%), Positives = 318/529 (60%), Gaps = 20/529 (3%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 +++ V L+ ++ YL YA++ I RA+PD+RDG KPVHRR+I+AM + G AF K Sbjct: 29 HIEQVDLQTEMQRSYLDYAMAVIIGRALPDVRDGLKPVHRRVIYAMYDGGYRPDRAFNKC 88 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 AR+VG+V+G+ HPHGD ++YD+LVRL Q ++ RYPL GQGNFG+ D AAA RYTE + Sbjct: 89 ARVVGDVMGQFHPHGDSAIYDTLVRLIQSWIMRYPLALGQGNFGSPGNDGAAAPRYTETK 148 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 M +A +++ ++ED VDF+ Y+ + EP V P++ PNLL NG+SGIAVGMAT+IP HN Sbjct: 149 MAPIALEMVRDINEDTVDFQPNYDGKSLEPTVLPARIPNLLVNGSSGIAVGMATNIPPHN 208 Query: 196 VQEICEAALALIDNPEISIEKLL----EYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251 ++E+ + NP + E+LL E I GPDFPTG I+ ++ I ++YR GRG Sbjct: 209 LREVAAGVEWFLKNPNATNEELLSALMERIKGPDFPTGATILGTK-GIEDAYRTGRGSIT 267 Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV-- 309 +RA VEE+ G C+VVTE+PYQ L KIA+LI ++ + D+RDE++ Sbjct: 268 MRAVVNVEEI-HGRTCLVVTELPYQANPDNLAIKIADLIKEGKVTGISDLRDETSGRTGQ 326 Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369 R+V+ K R P +++ +++ + ++ F NM + G VP+ + LD ++ W+ H+ Sbjct: 327 RLVIVLK-RDAVPKVVLNNLYKHTQLQENFSANMLAIVDG-VPRTLSLDAFIRHWVNHQM 384 Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTEN 426 +V+ RR+ +R++ + IL+GLL A +DE+IA+IR D+ + ++ + E Sbjct: 385 DVIVRRTRYRLRQAEEEAHILRGLLKALDALDEVIALIRRSPTADEARSALMDFLDIDEA 444 Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486 Q AILN++LR L LE +I+ D L + ++++ S +Q I+ E+ E+ + Sbjct: 445 QAQAILNMQLRRLAALERQKIQDRHDELQRLISEYNAIIASEDRQREIISEELGEIVNRY 504 Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKS 535 RRT D + + +I +E + V I+ G+I+ +S Sbjct: 505 GDD-----RRTEILRGFNGDMS--MEDLIPEEEVVVTITRGGYIKRTRS 546 >gi|88854505|ref|ZP_01129172.1| DNA gyrase subunit A [marine actinobacterium PHSC20C1] gi|88816313|gb|EAR26168.1| DNA gyrase subunit A [marine actinobacterium PHSC20C1] Length = 858 Score = 368 bits (944), Expect = 2e-99, Method: Compositional matrix adjust. Identities = 225/632 (35%), Positives = 359/632 (56%), Gaps = 39/632 (6%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 + + V L+ ++ YL YA+S I RA+P++RDG KPVHRR+I+AM + G F K Sbjct: 21 DKIDQVDLQLEMQRSYLDYAMSVIVGRALPEVRDGLKPVHRRVIYAMYDGGYRPDKGFSK 80 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 R++G+V+G+ HPHGD SVYD+LVRL QP+ RYPL GQGNFG+ D AAA+RYTE Sbjct: 81 CTRVIGDVMGQFHPHGDSSVYDALVRLVQPWSLRYPLALGQGNFGSPGNDGAAAHRYTET 140 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 +M +A +++ ++ED V+F+D Y+ EP V PS+FPNLL NG+ GIAVGMAT+IP H Sbjct: 141 KMAPLAMEMVRDIEEDTVEFQDNYDGRTQEPKVLPSRFPNLLVNGSVGIAVGMATNIPPH 200 Query: 195 NVQEICEAALALIDNPEISIEKLLEYII----GPDFPTGGIIVESRESIVESYRLGRGGF 250 N++E+ E AL + NPE + E+L+E +I GPDFPTG I+ + I ++YR GRG Sbjct: 201 NLREVGEGALWHLANPEATQEELIEALIQRIKGPDFPTGAQILGVK-GIQDAYRTGRGSV 259 Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV- 309 +RA VEE+ +G C+VVTE+PYQV L KIA+L+ ++ + DIRDE++ Sbjct: 260 TMRAVVSVEEL-QGRTCLVVTELPYQVNPDNLALKIADLVKDGKLAGIADIRDETSGRTG 318 Query: 310 -RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368 R+V+ K R +++ +++ + ++ F NM + G +P+ + +DG + W H+ Sbjct: 319 QRLVIVLK-RDAVAKVVLNNLYKHTQLQENFGANMLAIVDG-IPRTLSIDGFITAWATHQ 376 Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTE 425 EV+ RR+ FR++ + R IL+G L A +DE+IA+IR + + +++ + E Sbjct: 377 IEVIVRRTQFRLRKAEERAHILRGYLKALDALDEVIALIRRSPTVEDARTGLIALLEIDE 436 Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485 Q AIL+++LR L LE +I E + + E + +++ S ++Q + ++ E+ E+ Sbjct: 437 IQARAILDMQLRRLAALERQKIIDENEEIELEIVEFKAIIASEQRQRDIVS---EELTEL 493 Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545 +K D RRT D + + +I +E + V ++ G+++ +S D Sbjct: 494 LAKYGD--DRRTEIMLGFDGDMS--MEDLIPEEEMVVTVTRGGYVKRTRS---DNYRSQH 546 Query: 546 KEGDSLKIA----------LHAHTTDRILLLSTD-GKAYTLPAGNLLSG--RGHGEAIQL 592 + G +K A L TT LL T+ G+ Y A L G G+ + Sbjct: 547 RGGKGVKGAQLRADDIVDHLFVTTTHHWLLFFTNTGRVYRAKAYELQEGGRDAKGQHVAN 606 Query: 593 LIDLNHNQDIVTAF---VYDSTCKLLVVSSKG 621 + L ++I Y++ L++ + G Sbjct: 607 FLALQPGEEIAQILDIRDYETATYLVLATHNG 638 >gi|149184576|ref|ZP_01862894.1| DNA gyrase subunit A [Erythrobacter sp. SD-21] gi|148831896|gb|EDL50329.1| DNA gyrase subunit A [Erythrobacter sp. SD-21] Length = 946 Score = 368 bits (944), Expect = 2e-99, Method: Compositional matrix adjust. Identities = 243/722 (33%), Positives = 375/722 (51%), Gaps = 63/722 (8%) Query: 26 LEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGK 85 ++ YL YA+S I RA+PD+RDG KPVHRRI++A +E G G F+KSA+IVG+V+G Sbjct: 27 MKTSYLDYAMSVIVSRALPDVRDGLKPVHRRILYASNEGGFVAGRPFRKSAKIVGDVMGN 86 Query: 86 LHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQ 145 HPHGD ++YD+L R+ Q + R PLI GQGNFG++D D A+ RYTEAR+ +VA +L Sbjct: 87 YHPHGDAAIYDALARMTQNWSLRVPLIDGQGNFGSMDPDPPASMRYTEARLARVANSLLD 146 Query: 146 GVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALA 205 +D+D VDF D Y+ EP V P++FPNLL NG GIAVGMAT+IP HN+ E+ + A Sbjct: 147 DLDKDTVDFADNYDGSRREPTVLPARFPNLLVNGAGGIAVGMATNIPPHNLGEVIDGCFA 206 Query: 206 LIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGS 265 +DNP I+ E+L E I GPDFPT +I+ + +Y GRG RAR +EE Sbjct: 207 YMDNPAITNEELFEIIPGPDFPTAPLIL-GKTGARAAYTTGRGSILQRARHEIEERRGDR 265 Query: 266 WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA-EDVRIVLFPKNRSLDPDL 324 IV+T IP+QV KS L+EKIAE KRI + DIRDES+ + VR+V+ K R ++ Sbjct: 266 KSIVLTSIPFQVGKSGLVEKIAEAAKDKRIEGISDIRDESSRQGVRVVVDLK-RDASAEV 324 Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384 ++ I+ + ++ FP NM +S GR P+V+ L ++ ++ R EV+ RR+ + + Sbjct: 325 VLNQIWRYTPAQSSFPANMLAISGGR-PEVLTLREFIQAFITFREEVITRRTKYELNKAR 383 Query: 385 RRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV-------------------------- 418 R IL GL++A N+DE++A+IR+ P Sbjct: 384 DRAHILLGLVVAVSNLDEVVAMIRSAPTPAEARARLLAKEWPIGDIAQYIALVEAIEPSD 443 Query: 419 ----SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQ 474 + L+E QV AIL+LRL L L +I EL L E+ S+L + + Sbjct: 444 EQTGGTYRLSERQVKAILDLRLHRLTALGRDEIGDELKLLSLSIEEYLSILADRVKLYGV 503 Query: 475 IACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI---- 530 + E+ E++ ++ E++ A + +IE+E + V +++ G+I Sbjct: 504 MRGELEEIRAAYATP--------RVSEIAPAWDGIDDEDLIEREEMVVTVTHGGYIKRTP 555 Query: 531 ----RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--R 584 R+ S + K+ D++ T + +L + G+ Y + L G + Sbjct: 556 LDTFRAQARGGKGRSGMATKDEDAVVELFVTSTHNPVLFFTNTGRVYRMKVWKLPEGGPQ 615 Query: 585 GHGEAIQLLIDLNHNQDI--VTAFVYDST--CKLLVVSSKGNAFIVEES-----EIIANT 635 G + L+ L ++ + V A D KL +V + + S + +N Sbjct: 616 TKGRPMVNLLPLGDDERVTNVLALPEDEAEWAKLNIVFATEQGMVRRNSMDAFTNVPSNG 675 Query: 636 RKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEM-SR-GKGVRLQSYK 693 + F++ S + + + + + + ++ K + FS E SR G GVR K Sbjct: 676 KYAMGFVEDSGDRLIGVELLTEDQEIFLASDSGKAIRFSATDARETKSRTGIGVRGMKLK 735 Query: 694 DG 695 +G Sbjct: 736 EG 737 >gi|257422561|ref|ZP_05599551.1| topoisomerase IV subunit A [Enterococcus faecalis X98] gi|257164385|gb|EEU94345.1| topoisomerase IV subunit A [Enterococcus faecalis X98] Length = 820 Score = 368 bits (944), Expect = 2e-99, Method: Compositional matrix adjust. Identities = 210/618 (33%), Positives = 366/618 (59%), Gaps = 19/618 (3%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 + V+ ++L + +R+ Y+ I+ERA+PD+RDG KPV RRI+ +M++ G F F+K Sbjct: 5 QEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFSMNKDGNTFDKGFRK 64 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 SA+ VG ++G HPHGD S+Y+++VRL+Q + R LI GN G++DGD AA RYTEA Sbjct: 65 SAKSVGNIMGNYHPHGDSSIYEAMVRLSQDWKLREVLIEMHGNNGSMDGDPPAAMRYTEA 124 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 R++Q++ +L+ ++++ VDF +++ + EP V P+K+PNLL NG++GI+ G AT IP+H Sbjct: 125 RLSQLSGELLKDIEKNTVDFVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATEIPTH 184 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 N+ EI + + LID+P S+EKL+EYI GPDFPTGGI+ + + I ++Y GRG +RA Sbjct: 185 NLAEIIDGTVYLIDHPNASLEKLMEYIPGPDFPTGGIL-QGKAEIKKAYETGRGKVILRA 243 Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314 + +E + G IV++EIPY+V K+ L++K+ E+ + K++ + ++RDES ++ Sbjct: 244 KTKIEPLKGGKQQIVISEIPYEVNKATLVKKMDEIRLNKKVDGIAEVRDESDRTGLQIVV 303 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 + ++ + ++ +F ++++ + NM + PQ + L IL+ ++ HR+ V+ Sbjct: 304 ELKKDVNAEGILNYLFKNTELQINYNFNMVAID-NMTPQQVGLKRILESYITHRKSVIIN 362 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDK--PKPVMVSRFSLTENQVDAI 431 R F + +R I+ GL+ A +D++IA IR ++DK K +VS ++ TE Q +AI Sbjct: 363 RCQFELDKARKREHIVAGLIKALSILDKVIATIRGSKDKKDAKKNLVSDYAFTEEQAEAI 422 Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491 + L+L L + ++ E L + ++ ++LN+ K+ ++ + E+REVK+ + Sbjct: 423 VTLQLYRLTNTDITDLQEEAKTLEQQIAELLNILNNEKELFSVMKKELREVKKQY----- 477 Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSVDL-SALHFKEG 548 G R T E + ++ +E + V +++ G+I+ S++S++ + KEG Sbjct: 478 -GNPRLTQIEEEIQEIKIETAVLVAQEDVVVTVTHEGYIKRSSIRSYTASKPEEIGMKEG 536 Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAI-QLLIDLNHNQDIVTA 605 D L A +T D +LL++ G P L L + GE I Q +++L ++ I+ Sbjct: 537 DFLLYAGEVNTLDHLLLVTNKGNMIYRPVHELPDLRWKEIGEHISQTILNLAIDESIIAV 596 Query: 606 FVYD--STCKLLVVSSKG 621 + Y S K V +K Sbjct: 597 YPYKELSPTKTFVFITKA 614 >gi|206148715|gb|ACI05548.1| GyrA [Mycobacterium indicus pranii] Length = 829 Score = 368 bits (944), Expect = 3e-99, Method: Compositional matrix adjust. Identities = 221/584 (37%), Positives = 336/584 (57%), Gaps = 33/584 (5%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 + ++ V ++ ++ Y+ YA+S I RA+P++RDG KPVHRR+++AM + G + K Sbjct: 14 DRIQPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAMYDSGFRPDRSHAK 73 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 SAR V E +G HPHGD S+YD+LVR+AQP+ RYPL+ GQGNFG+ D AA RYTEA Sbjct: 74 SARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSPGNDPPAAMRYTEA 133 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 R+T +A +L+ +DE+ VDF Y+ EP V PS+FPNLLANG+ GIAVGMAT+IP H Sbjct: 134 RLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSGGIAVGMATNIPPH 193 Query: 195 NVQEICEAALALIDNPEISIEKLL----EYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250 N++E+ EA +DN E E L E + GPDFPT G+IV S + I ++Y GRG Sbjct: 194 NLRELAEAVYWCLDNHEADEEATLTAVCERVKGPDFPTHGLIVGS-QGIHDAYTTGRGSI 252 Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV- 309 R+R VEE RG +V+TE+PYQV I IAE + ++ + +I D+S++ V Sbjct: 253 RMRGVVEVEEDSRGRTSLVITELPYQVNHDNFITSIAEQVRDGKLAGISNIEDQSSDRVG 312 Query: 310 -RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368 RIV+ K R +++ +++ + ++T F NM + G VP+ + LD +++ ++AH+ Sbjct: 313 LRIVVEIK-RDAVAKVVLNNLYKHTQLQTSFGANMLSIVDG-VPRTLRLDQMIRHYVAHQ 370 Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTE 425 +V+ RR+++R++ + R IL+GL+ A +DE+IA+IR D + ++ + E Sbjct: 371 LDVIVRRTTYRLRKANERAHILRGLVKALDALDEVIALIRASETVDIARAGLIELLDIDE 430 Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485 Q AIL+++LR L LE +I +L + AE ++ +L ++Q + E+ EI Sbjct: 431 IQAQAILDMQLRRLAALERQRIIDDLAKIEAEIADLEDILAKPERQRRIVHDEL---SEI 487 Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHS 537 K D RRT AD + +I +E + V I+ G+ RS K Sbjct: 488 VDKHGD--ERRTRIIA---ADGDVNDEDLIAREDVVVTITETGYAKRTKTDLYRSQKRGG 542 Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLP 576 + K+ D ++ T D IL +T G KAY LP Sbjct: 543 KGVQGAGLKQDDIVRHFFVCSTHDWILFFTTQGRVYRAKAYELP 586 >gi|331693905|ref|YP_004330144.1| DNA gyrase subunit A [Pseudonocardia dioxanivorans CB1190] gi|326948594|gb|AEA22291.1| DNA gyrase, A subunit [Pseudonocardia dioxanivorans CB1190] Length = 839 Score = 368 bits (944), Expect = 3e-99, Method: Compositional matrix adjust. Identities = 216/586 (36%), Positives = 337/586 (57%), Gaps = 31/586 (5%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 + ++ V ++ ++ Y+ YA+S I RA+P + DG KPVHRR++++M E G ++ K Sbjct: 19 DRIEPVDIQQEMQRSYIDYAMSVIVGRALPLVEDGLKPVHRRVLYSMGENGFRPDRSYVK 78 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 AR+VGEV+G HPHGD ++YD+LVRLAQP+ RYPLI GQGNFG+ D AAA RYTE Sbjct: 79 CARVVGEVMGNYHPHGDSAIYDALVRLAQPWSMRYPLIDGQGNFGSRGNDPAAAMRYTEC 138 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 R++ +A +LQ ++E+ VDF D Y+ + EPVV PS+ PNLL NG+ GIAVGMAT+IP H Sbjct: 139 RLSPLAMAMLQDIEEETVDFLDNYDGKTQEPVVLPSRVPNLLINGSVGIAVGMATNIPPH 198 Query: 195 NVQEICEAALALIDNPEISIEKLLEYII----GPDFPTGGIIVESRESIVESYRLGRGGF 250 N++E+ + ++N E S E+LLE ++ GPDFPT G+IV R+ I +YR GRG Sbjct: 199 NLREVGAGVVWALENHEASDEELLEALMARIPGPDFPTAGLIV-GRDGIESAYRTGRGSI 257 Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVR 310 R+R+ VEE +G +VVTE+PYQV LIE IA ++ ++ + +I DES++ + Sbjct: 258 RMRSVVEVEEDAKGRTILVVTELPYQVNPDNLIESIASMVRDGKLTGIAEINDESSDRIG 317 Query: 311 I-VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369 + ++F R +++ +++ + ++T F +NM + G VP+ + LD +++ ++ H+ Sbjct: 318 MRIVFTLKRDAVAKVVLNNLYKHTQLQTSFGVNMLAIVDG-VPRTLRLDQVVRNYIRHQI 376 Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTEN 426 EV+ RR+ +R++ + R IL+GL+ A +DE+IA+IR D + ++ + + Sbjct: 377 EVIVRRTRYRLRKAEERAHILRGLVKALDALDEVIALIRASETVDVARQGLIDLLDVDDI 436 Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486 Q AIL+++LR L LE +I EL + E +L ++Q QI + E+ EI Sbjct: 437 QAQAILDMQLRRLAALERQKIIDELAEIEREIADYQDILARPERQ-RQIVRD--ELTEIV 493 Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHSV 538 K D R R D + +I E + V I+ G+ R+ K Sbjct: 494 DKHGDERRSRLVA-----DDGDVTNEDLIAVEDVVVTITETGYAKRTKTDLYRAQKRGGK 548 Query: 539 DLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGN 579 + K+ D + T D +L + G KAY LP N Sbjct: 549 GVQGATLKQDDIVAHFFVCSTHDWMLFFTNKGRVYRLKAYELPEAN 594 >gi|331701469|ref|YP_004398428.1| DNA topoisomerase IV subunit A [Lactobacillus buchneri NRRL B-30929] gi|329128812|gb|AEB73365.1| DNA topoisomerase IV, A subunit [Lactobacillus buchneri NRRL B-30929] Length = 812 Score = 367 bits (943), Expect = 3e-99, Method: Compositional matrix adjust. Identities = 228/756 (30%), Positives = 409/756 (54%), Gaps = 52/756 (6%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 +++++L + ER+ Y+ S I+ERA+PD+RDG KPV RRI++AM++ G + F+KSA Sbjct: 4 IESLTLEDVMGERFSRYSKSIIQERALPDIRDGLKPVQRRILYAMNKDGNTYDKPFRKSA 63 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 + VG V+G HPHGD S+Y++L R++Q + R PLI GN G++DGD AA RYTEAR+ Sbjct: 64 KSVGNVMGNFHPHGDSSIYEALNRMSQDWKVREPLIEMHGNNGSMDGDPPAAMRYTEARL 123 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 +++A +L+ +++D VD+ +++ + EP V PS+FPNLL NG++GI+ G AT IP HN+ Sbjct: 124 SKIASEMLRDIEKDTVDWVLNFDDTEYEPTVLPSRFPNLLVNGSTGISAGYATDIPPHNL 183 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ +A L L +P+ +++ L++++ GPDFPTG IV+ + I ++Y G G VR++ Sbjct: 184 GEVIDAILYLQKHPDATLDDLMQFVKGPDFPTGA-IVQGIDGIKKAYETGHGKIIVRSKT 242 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316 +E + IV+TEIPY+V K++L+++I E+ + K+I + ++RD+S + ++ Sbjct: 243 SIEPLKGNKSQIVITEIPYEVNKAQLVKRIDEIRLNKKIEGISEVRDQSDRNGLSIVVEL 302 Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376 R +D ++ +F +D++ + NM +S R P+ + L IL +L ++EV+ +R+ Sbjct: 303 KRDVDSKGILNYLFKNTDLQVSYNFNMVAISHMR-PERLSLKKILVAYLEFQQEVIEKRT 361 Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAILN 433 + ++ R I++GL+ A +D++I IR N + +V + +E Q DAI+ Sbjct: 362 KYNLKKAQDRQHIVEGLIHALSILDKVIKTIRASKNRKDARDNLVKTYDFSEKQADAIVA 421 Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493 L+L L + ++++E +L E K + +LNS K+ +A E+R + + + + Sbjct: 422 LQLYRLTNTDVTELENEHQHLADEITKDNKILNSPKELNRVLANELRALAKTYRSA---- 477 Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSVDLSALHFKEGDSL 551 RR EVS D +I E + V++S+ G+I+ S++S+ + K+ D Sbjct: 478 RRTEIQAEVS--DIKINTDVLIPDEDVIVMVSHDGYIKRSSIRSYKASTTDTGLKDEDYP 535 Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAFVYD 609 + D + + + G P L + + GE I I L+ +++I+ + +D Sbjct: 536 IFMAELNARDHLFMFTNKGNLIYRPVFELADVKWKDTGEHISQTIGLDADEEIIGTYAFD 595 Query: 610 STCK---LLVVSSKGNAFIVEESEIIANTRKGKTFL-KVSSEEKMK-----------LVV 654 S + L+ + +G+ + A+ + G+T+ + EK+K L Sbjct: 596 SLKQPGTFLIATDQGHV----KQTGFADMKPGRTYKSHAYTYEKLKTADERVVAIHYLKT 651 Query: 655 KVTGDHVAVVGENRKLLIFSIDQIP-EMSRGKGVRLQSYKDGGISDVICFKICEGLTWID 713 T + ++ N L + ID++P +R GV+ GL +D Sbjct: 652 PATAGQMLLISNNGLALRYGIDEVPVNGARTTGVK-----------------SMGLRGVD 694 Query: 714 SAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGK 749 SE+D+L + +RG L K P + + Sbjct: 695 KVTNLQLVSEDDVLAIVTQRGSFKKLAVKEIPATSR 730 >gi|295689998|ref|YP_003593691.1| DNA gyrase, subunit A [Caulobacter segnis ATCC 21756] gi|295431901|gb|ADG11073.1| DNA gyrase, A subunit [Caulobacter segnis ATCC 21756] Length = 918 Score = 367 bits (943), Expect = 3e-99, Method: Compositional matrix adjust. Identities = 246/767 (32%), Positives = 384/767 (50%), Gaps = 60/767 (7%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 ++ +++ L YL YA+S I RA+PD RDG KPVHRR++ +M E G + KS Sbjct: 16 DIAPINIEDELRRSYLDYAMSVIVSRALPDARDGLKPVHRRVLFSMHEQGQTPERPYVKS 75 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 AR+VG+V+GK HPHGD S+Y +LVR+ QPF LI GQGNFG++DGD AA RYTE R Sbjct: 76 ARVVGDVMGKYHPHGDASIYFTLVRMTQPFSMGLVLIDGQGNFGSVDGDMPAAMRYTECR 135 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 M A +L +D+D VDF D Y+ ++ EP V P++ PNLL NG GIAVGMAT+IP HN Sbjct: 136 MAPPAMALLADLDKDTVDFVDNYDGKEQEPTVLPARIPNLLVNGAGGIAVGMATNIPPHN 195 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 + E+ +A L LID PEI+ ++LL+ + GPDFPTGG I+ R ++ GRG +R Sbjct: 196 LGEVIDACLLLIDEPEITTDQLLDLVPGPDFPTGGEII-GRAGPRQALLTGRGSVIMRGV 254 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315 VE++ G I+VTEIPYQV K+ L+E IAEL+ K++ + DIRDES D ++ Sbjct: 255 ASVEDLRAGREAIIVTEIPYQVNKANLVEHIAELVRDKKLEGIADIRDESNRDGMRIVIE 314 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 R ++++ ++ + +++ F +NM L+ GR P+ M L +L+ ++ R EV+ RR Sbjct: 315 LKRDASGEVILNQLYRFTALQSSFGVNMLALNRGR-PEQMGLHKLLQLFVEFREEVVVRR 373 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSR------------ 420 + F + R +L GL IA NIDE I IIR+ P +V++ Sbjct: 374 TKFELGKARDRGHVLVGLTIAVANIDEFIHIIRSSKDPTEARERLVAKSWPAGDMLPLVE 433 Query: 421 --------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN 466 LT+ Q AIL L L L L +I +E + L LL+ Sbjct: 434 LIADPRTIQEEGGLIRLTDEQARAILALTLSRLTGLGREEIGNEAETLADAIRGYLELLS 493 Query: 467 SGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISN 526 + E+ EV+E F+ + RR C++ D + +I +E + + ++ Sbjct: 494 DRANIMAVVREELVEVREKFA----VPRR----CQIVDGDADMEDEDLIVREDMVITVTM 545 Query: 527 RGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAG 578 G++ R+ S + K D++ A T +L ++ GK Y + Sbjct: 546 GGYVKRTPLANYRTQHRGGKGKSGMATKNEDAVTRVFSASTHAPLLFFTSGGKVYKMKVW 605 Query: 579 NLLSG--RGHGEAIQLLIDLNHNQDIVTAFVYD------STCKLLVVSSKGNAFIVEESE 630 L G G+A L+ + + I + S ++ + G+ + S+ Sbjct: 606 RLPLGVANSRGKAFVNLLPIESGETITSILALPEDEATWSGLDVMFATRSGSVRRNKLSD 665 Query: 631 IIANTRKGKTFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR--GKGV 687 + R GK +K+ + + V D V + + + FS+D++ + GV Sbjct: 666 FVDVRRNGKIAMKLDEGDGIVGVAVCNADQDVLLTTAAGRCIRFSVDEVRVFASRDSTGV 725 Query: 688 RLQSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDLLGWLGKRG 734 R +G +VI + + + +Y + + +L G+ G Sbjct: 726 RGVRLAEG--DEVISMAVLRSVDATPAERAAYLKHQRAMLRAAGEEG 770 >gi|331269785|ref|YP_004396277.1| DNA topoisomerase, GyrA/ParC subunit family [Clostridium botulinum BKT015925] gi|329126335|gb|AEB76280.1| DNA topoisomerase, GyrA/ParC subunit family [Clostridium botulinum BKT015925] Length = 970 Score = 367 bits (943), Expect = 3e-99, Method: Compositional matrix adjust. Identities = 213/604 (35%), Positives = 356/604 (58%), Gaps = 25/604 (4%) Query: 8 NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67 N N + N+ S+ + E YL YA+ KERA+PD+RDG KPVHRRI++ ++ Sbjct: 5 NMNIPKDNNIIKTSISEVMPENYLPYAVEVAKERALPDVRDGLKPVHRRILYGAYKLKAT 64 Query: 68 FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAA 127 + KSARIVG+++GK HPHGD SVYD++V LAQ F R PLI G GN+G+IDGD+AA Sbjct: 65 PDKPYYKSARIVGDILGKYHPHGDTSVYDAMVILAQNFTTRIPLIDGHGNWGSIDGDNAA 124 Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187 A RYTEAR+T A +L+ +D+D VD Y++ + EP V P++FPNLL NG GIAVG+ Sbjct: 125 AMRYTEARLTNPALEMLRDIDKDVVDMVSNYSDTELEPKVLPARFPNLLVNGAFGIAVGL 184 Query: 188 ATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGR 247 AT+IP HN++E +A +A IDN +IS ++L+ YI GPD PTGGII+ ++++ +Y G Sbjct: 185 ATNIPPHNLRESIDATVAYIDNNDISTKELMNYIKGPDLPTGGIII-GEQALLSAYEKGE 243 Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR----IPLLEDIRD 303 G +RA+ +E++ + I++ E PY+ KS++++ I+E+ K+ + + DIRD Sbjct: 244 GRVTLRAKTSIEKLENDRYGIIIKEFPYRKNKSKILQTISEMTADKKHSKALENITDIRD 303 Query: 304 ESAED-VRIVL-FPKNRSLD-PDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360 ES + +R V+ F K+ +++ + +++ +F ++++ NM ++ G+ P+ + L I Sbjct: 304 ESDRNGIRAVIEFKKSANVEVVERVLKYLFKKTELQCNISFNMVAIADGK-PETLGLKAI 362 Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---M 417 LK ++ H++EV+ RRS ++ +R I++G + A +DEI+ IR+ K + Sbjct: 363 LKYYVEHQKEVVIRRSEKELEIAKKRFHIVEGFIKAIDIMDEILDTIRSSKSKKDSEQNL 422 Query: 418 VSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIAC 477 V++F + Q AI+ L L L LE + E NL + + ++ +L+S K+ + + Sbjct: 423 VNKFGFSMEQAQAIVELMLYKLTGLEIKVFEKEYKNLEKKIKALEKILSSEKELFKVVKK 482 Query: 478 EIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSH- 536 E+ EVKE + RRT K +++ +++ E I + +SN G+I+ + Sbjct: 483 ELEEVKEKYGDP-----RRTEIVHDDEQAKIDIEELILD-EDIVITLSNEGYIKRVADKY 536 Query: 537 ----SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAI 590 + + + ++EGD L+ +T D +++ + G Y + N+ + + GE + Sbjct: 537 YRRINPKVEDIEYREGDFNTYVLNGNTKDNMMIFTNQGNLYQIRISNIPEMKWKEKGERL 596 Query: 591 QLLI 594 LI Sbjct: 597 DTLI 600 >gi|119714279|ref|YP_921244.1| DNA gyrase subunit A [Nocardioides sp. JS614] gi|119534940|gb|ABL79557.1| DNA gyrase subunit A [Nocardioides sp. JS614] Length = 922 Score = 367 bits (943), Expect = 3e-99, Method: Compositional matrix adjust. Identities = 231/709 (32%), Positives = 387/709 (54%), Gaps = 44/709 (6%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 ++ V L+ +++ Y+ YA++ I RA+PD+RDG KPVHRR+++AM + G F K + Sbjct: 23 IEPVELQTSMQRAYIDYAMAVIVGRALPDVRDGLKPVHRRVLYAMYDGGYRPDRGFSKCS 82 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+V+G+ HPHGD ++YD+LVRLAQP+V R PLI GQGNFG+ DSAAA RYTE RM Sbjct: 83 RVVGDVMGQYHPHGDTAIYDTLVRLAQPWVMRAPLIHGQGNFGSPGNDSAAAMRYTECRM 142 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 +A +++ ++ED VDF+ Y+ EPVV P++FPNLL NG++GIAVGMAT+IP HN+ Sbjct: 143 APLAMEMVRDINEDTVDFQPNYDGRSQEPVVLPARFPNLLVNGSAGIAVGMATNIPPHNL 202 Query: 197 QEICEAALALIDNPEISIEK----LLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252 +E+ E A +++P+ + E+ L+E I GPDFP G +IV R+ I ++YR GRG Sbjct: 203 REVAEGARWALEHPDATREELQDALIERIKGPDFPNGALIV-GRQGIEQAYRTGRGSITQ 261 Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV--R 310 RA V+E +G +V+TE+PY V L KIAEL + ++ + D+RD++++ R Sbjct: 262 RAVIEVDEDAKGRTNLVITELPYMVNPDNLALKIAELADSGKVQGISDVRDDTSDRTGQR 321 Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370 +V+ K ++ +++ ++ ++++T F NM L G VP+ + +D + W+ H+ + Sbjct: 322 LVVVLKRDAV-ARVVLNNLLKHTELQTNFSANMLALVDG-VPRTLAIDQFISNWVTHQID 379 Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQ 427 V+ RR+ +R+ ++R +L+GL+ A +DE+IA+IR + + +++ + E Q Sbjct: 380 VIRRRTEYRLAEAEKRAHVLRGLVKALDMLDEVIALIRRSPDVAEAREGLIALLDIDEVQ 439 Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487 AIL+++LR L L+ +I +L + A + +L + +Q +A E+ E+ E + Sbjct: 440 ATAILDMQLRQLAALQRQKIIDDLAEIEARIADLKDILANVARQRQIVADELAEIVERYG 499 Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFK- 546 RR+ ++ AD + +I E + V I+ G+ + ++ K Sbjct: 500 DD-----RRS---QIIAADGDLSMEDLIPDEELVVSITRGGYAKRTRADQYRTQRRGGKG 551 Query: 547 ------EGDSLKIALHAHTTDRILLLSTDG------KAYTLPAGNLLSGRGHGEAIQLLI 594 GD + A T LL T KAY LP + + GH + L+ Sbjct: 552 VRGATLRGDDVVEHFIATTNHHWLLFFTTAGRVYRTKAYNLPEASRDAKGGH---VAGLL 608 Query: 595 DLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMK 651 +++I YD L++ + G + + + G + SE+ Sbjct: 609 SFQPDENIAQVLAIRDYDQAPYLVLATRDGLVKKTRLGDYNSPRQAGVIAINFRSEDDEL 668 Query: 652 LVVKVTG--DHVAVVGENRKLLIFSID--QIPEMSRGK-GVRLQSYKDG 695 + ++ DH+ +V + + F D Q+ M R GV ++DG Sbjct: 669 IGAELVNPEDHILLVSRKGQSVRFQADDSQLRPMGRATGGVTGMKFRDG 717 >gi|73916830|gb|AAZ93283.1| topoisomerase IV subunit A [Streptococcus pneumoniae] gi|73916878|gb|AAZ93307.1| topoisomerase IV subunit A [Streptococcus pneumoniae] gi|73916882|gb|AAZ93309.1| topoisomerase IV subunit A [Streptococcus pneumoniae] gi|73916912|gb|AAZ93324.1| topoisomerase IV subunit A [Streptococcus pneumoniae] gi|73916916|gb|AAZ93326.1| topoisomerase IV subunit A [Streptococcus pneumoniae] gi|73916920|gb|AAZ93328.1| topoisomerase IV subunit A [Streptococcus pneumoniae] gi|73916922|gb|AAZ93329.1| topoisomerase IV subunit A [Streptococcus pneumoniae] Length = 821 Score = 367 bits (943), Expect = 3e-99, Method: Compositional matrix adjust. Identities = 223/709 (31%), Positives = 399/709 (56%), Gaps = 33/709 (4%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 N++ +SL + ER+ Y+ I++RA+PD+RDG KPV RRI+++M++ F +++KS Sbjct: 1 NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 60 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 A+ VG ++G HPHGD S+YD++VR++Q + R L+ GN G++DGD AA RYTEAR Sbjct: 61 AKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 120 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 ++++A +LQ ++++ V F +++ + EP V P+ FPNLL NG++GI+ G AT IP HN Sbjct: 121 LSEIAGYLLQDIEKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 180 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 + E+ +AA+ +ID+P I+KL+E++ GPDFPTG II + R+ I ++Y G+G VR++ Sbjct: 181 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAII-QGRDEIKKAYETGKGRVVVRSK 239 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315 +E++ G IV+TEIPY++ K+ L++KI ++ + ++ + ++RDES D + Sbjct: 240 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 299 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 + + +L++ +F +D++ + NM + P+ + + IL ++AHRREV+ R Sbjct: 300 LKKDANTELVLNYLFKYTDLQINYNFNMVAID-NFTPRQVGIVPILSSYIAHRREVILAR 358 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432 S F + ++R+ I++GL+ +DE+IA+IR N+ K + + TE Q +AI+ Sbjct: 359 SRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIV 418 Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492 L+L L + ++ E L + + +++ + +N + E+REVK+ F+ Sbjct: 419 TLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP--- 475 Query: 493 GRRRTTFCEVSRA---DKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FK 546 R ++ + ++A D A+L I +E V ++ G+I+ S S L + Sbjct: 476 --RLSSLEDTAKAIEIDTASL----IAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKR 529 Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIV 603 + D L A TT +L+ ++ G P L R GE + Q + + N++I+ Sbjct: 530 DDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEIL 589 Query: 604 TAFV---YDSTCKLLVVSSKGNAFIVEESEIIA-NTRKGKT--FLKVSSE-EKMKLVVKV 656 V +D V+ G VE E T + K+ + K+ + +++ V + Sbjct: 590 YVEVLDQFDDATTYFAVTRLGQIKRVERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPI 649 Query: 657 TGDHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDGGI--SDVIC 702 D V +V +N L F+I+++P + ++ GV+ + K+ + S IC Sbjct: 650 KLDDVVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSGFIC 698 >gi|329571650|gb|EGG53331.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis TX1467] Length = 823 Score = 367 bits (943), Expect = 3e-99, Method: Compositional matrix adjust. Identities = 210/618 (33%), Positives = 365/618 (59%), Gaps = 19/618 (3%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 + V+ ++L + +R+ Y+ I+ERA+PD+RDG KPV RRI+ +M++ G F F+K Sbjct: 8 QEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFSMNKDGNTFDKGFRK 67 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 SA+ VG ++G HPHGD S+Y+++VRL+Q + R LI GN G++DGD AA RYTEA Sbjct: 68 SAKSVGNIMGNYHPHGDSSIYEAMVRLSQDWKLREVLIEMHGNNGSMDGDPPAAMRYTEA 127 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 R++Q++ +L+ +D++ VDF +++ + EP V P+K+PNLL NG++GI+ G AT IP+H Sbjct: 128 RLSQLSGELLKDIDKNTVDFVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATEIPTH 187 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 N+ EI + + LID+P S+EKL+EYI GPDFPTGGI+ + + I ++Y GRG +RA Sbjct: 188 NLAEIIDGTVYLIDHPNASLEKLMEYIPGPDFPTGGIL-QGKAEIKKAYETGRGKVILRA 246 Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314 + +E + G IV++EIPY+V K+ L++K+ E+ + K++ + ++RDES ++ Sbjct: 247 KTKIEPLKGGKQQIVISEIPYEVNKATLVKKMDEIRLNKKVDGIAEVRDESDRTGLQIVV 306 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 + ++ + ++ +F ++++ + NM + PQ + L IL+ ++ HR+ V+ Sbjct: 307 ELKKDVNAEGILNYLFKNTELQINYNFNMVAID-NMTPQQVGLKRILESYITHRKSVIIN 365 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDK--PKPVMVSRFSLTENQVDAI 431 R F + +R I+ GL+ A +D++IA IR ++DK K +VS ++ TE Q +AI Sbjct: 366 RCQFELDKARKREHIVAGLIKALSILDKVIATIRGSKDKKDAKKNLVSDYAFTEEQAEAI 425 Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491 + L+L L + ++ E L + ++ ++LN+ + ++ + E+REVK+ + Sbjct: 426 VTLQLYRLTNTDITDLQEEAKTLEQQIAELLNILNNENELFSVMKKELREVKKQY----- 480 Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSVDL-SALHFKEG 548 G R T E + ++ +E + V +++ G+I+ S++S++ + KEG Sbjct: 481 -GNPRLTQIEEEIQEIKIETAVLVAQEDVVVTVTHEGYIKRSSIRSYTASKPEEIGMKEG 539 Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAI-QLLIDLNHNQDIVTA 605 D L A +T D +LL++ G P L L + GE I Q +++L ++ I+ Sbjct: 540 DFLLYAGEVNTLDHLLLVTNKGNMIYRPVHELPDLRWKEIGEHISQTILNLAIDESIIAV 599 Query: 606 FVYD--STCKLLVVSSKG 621 + Y S K V +K Sbjct: 600 YPYKELSPTKTFVFITKA 617 >gi|257079060|ref|ZP_05573421.1| DNA topoisomerase IV subunit A [Enterococcus faecalis JH1] gi|294781700|ref|ZP_06747035.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis PC1.1] gi|256987090|gb|EEU74392.1| DNA topoisomerase IV subunit A [Enterococcus faecalis JH1] gi|294451252|gb|EFG19719.1| DNA topoisomerase IV, A subunit [Enterococcus faecalis PC1.1] Length = 820 Score = 367 bits (943), Expect = 3e-99, Method: Compositional matrix adjust. Identities = 210/618 (33%), Positives = 365/618 (59%), Gaps = 19/618 (3%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 + V+ ++L + +R+ Y+ I+ERA+PD+RDG KPV RRI+ +M++ G F F+K Sbjct: 5 QEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFSMNKDGNTFDKGFRK 64 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 SA+ VG ++G HPHGD S+Y+++VRL+Q + R LI GN G++DGD AA RYTEA Sbjct: 65 SAKSVGNIMGNYHPHGDSSIYEAMVRLSQDWKLREVLIEMHGNNGSMDGDPPAAMRYTEA 124 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 R++Q++ +L+ +D++ VDF +++ + EP V P+K+PNLL NG++GI+ G AT IP+H Sbjct: 125 RLSQLSGELLKDIDKNTVDFVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATEIPTH 184 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 N+ EI + + LID+P S+EKL+EYI GPDFPTGGI+ + + I ++Y GRG +RA Sbjct: 185 NLAEIIDGTVYLIDHPNASLEKLMEYIPGPDFPTGGIL-QGKAEIKKAYETGRGKVILRA 243 Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314 + +E + G IV++EIPY+V K+ L++K+ E+ + K++ + ++RDES ++ Sbjct: 244 KTKIEPLKGGKQQIVISEIPYEVNKATLVKKMDEIRLNKKVDGIAEVRDESDRTGLQIVV 303 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 + ++ + ++ +F ++++ + NM + PQ + L IL+ ++ HR+ V+ Sbjct: 304 ELKKDVNAEGILNYLFKNTELQINYNFNMVAID-NMTPQQVGLKRILESYITHRKSVIIN 362 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDK--PKPVMVSRFSLTENQVDAI 431 R F + +R I+ GL+ A +D++IA IR ++DK K +VS ++ TE Q +AI Sbjct: 363 RCQFELDKARKREHIVAGLIKALSILDKVIATIRGSKDKKDAKKNLVSDYAFTEEQAEAI 422 Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491 + L+L L + ++ E L + ++ ++LN+ + ++ + E+REVK+ + Sbjct: 423 VTLQLYRLTNTDITDLQEEAKTLEQQIAELLNILNNENELFSVMKKELREVKKQY----- 477 Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSVDL-SALHFKEG 548 G R T E + ++ +E + V +++ G+I+ S++S++ + KEG Sbjct: 478 -GNPRLTQIEEEIQEIKIETAVLVAQEDVVVTVTHEGYIKRSSIRSYTASKPEEIGMKEG 536 Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAI-QLLIDLNHNQDIVTA 605 D L A +T D +LL++ G P L L + GE I Q +++L ++ I+ Sbjct: 537 DFLLYAGEVNTLDHLLLVTNKGNMIYRPVHELPDLRWKEIGEHISQTILNLAIDESIIAV 596 Query: 606 FVYD--STCKLLVVSSKG 621 + Y S K V +K Sbjct: 597 YPYKELSPTKTFVFITKA 614 >gi|254387097|ref|ZP_05002371.1| DNA gyrase subunit A [Streptomyces sp. Mg1] gi|194345916|gb|EDX26882.1| DNA gyrase subunit A [Streptomyces sp. Mg1] Length = 857 Score = 367 bits (943), Expect = 3e-99, Method: Compositional matrix adjust. Identities = 227/632 (35%), Positives = 354/632 (56%), Gaps = 48/632 (7%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 ++ V L ++ YL YA+S I RA+PD+RDG KPVHRR+++AM + G F K A Sbjct: 4 IEPVGLETEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMYDGGYRPEKGFYKCA 63 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+V+G HPHGD S+YD+LVRLAQP+ R PL+ GNFG+ D AAA RYTE ++ Sbjct: 64 RVVGDVMGTYHPHGDSSIYDALVRLAQPWSLRMPLVDSNGNFGSPGNDPAAAMRYTECKL 123 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 +A +L+ +DE+ VDF D Y+ + EP V P++FPNLL NG++GIAVGMAT+IP Sbjct: 124 MPLAMEMLRDIDEETVDFTDNYDGRNQEPTVLPARFPNLLVNGSAGIAVGMATNIPP--- 180 Query: 197 QEICEAALALIDNPEISIEK----LLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252 ++ A +++P+ S E+ L+E I GPDFP+G ++V R+ I E+YR GRG + Sbjct: 181 -QVAAGAQWALEHPDASHEELQDALIERIKGPDFPSGALVV-GRKGIEEAYRTGRGSITM 238 Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV--R 310 RA VEE+ + C+VVTE+PYQ L +KIA+L+ +I + D+RDE++ R Sbjct: 239 RAVVEVEEI-QNRQCLVVTELPYQTNPDNLAQKIADLVKDGKIGGIADVRDETSSRTGQR 297 Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370 +V+ K R +++ +++ +D++T F NM L G VP+ + +D ++ W+ H+ E Sbjct: 298 LVIVLK-RDAVAKVVLNNLYKHTDLQTNFGANMLALVDG-VPRTLSIDAFIRHWVTHQIE 355 Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQ 427 V+ RR+ FR++ + R IL+GLL A IDE+IA+IR + + ++ + E Q Sbjct: 356 VIVRRTKFRLRKAEERAHILRGLLKALDAIDEVIALIRRSNTVEIAREGLMGLLEIDEIQ 415 Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487 +AIL ++LR L LE +I +E D L A+ + + +L S +Q + ++ E+ + E F Sbjct: 416 ANAILEMQLRRLAALERQKIVAEHDELQAKINEYNEILRSESRQRSIVSEELAAIVEKFG 475 Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVD 539 RR+ D + +I +E I V I++ G++ RS K Sbjct: 476 DD-----RRSKLVPF---DGDMSMEDLIAEEDIVVTITHGGYVKRTKTEDYRSQKRGGKG 527 Query: 540 LSALHFKEGDSLKIALHAHTTDRILLLSTD------GKAYTLPAGNLLSGR-GHGEAIQL 592 + K+ D L TT LL T+ KAY LP +GR G+ + Sbjct: 528 VRGTKLKQ-DDLVDHFFVSTTHHWLLFFTNKGRVYRSKAYELPD----AGRDARGQHVAN 582 Query: 593 LIDLNHNQDIVTAFV---YDSTCKLLVVSSKG 621 L+ ++ I Y++ L++ + G Sbjct: 583 LLAFQPDEKIAQILAIRDYEAAPYLILATKGG 614 >gi|148241841|ref|YP_001226998.1| DNA gyrase subunit A [Synechococcus sp. RCC307] gi|147850151|emb|CAK27645.1| DNA gyrase/topoisomerase IV, subunit A [Synechococcus sp. RCC307] Length = 859 Score = 367 bits (943), Expect = 3e-99, Method: Compositional matrix adjust. Identities = 242/714 (33%), Positives = 392/714 (54%), Gaps = 51/714 (7%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 E + LR + YL YA+S I RA+PD RDG KPVHRRI++AM E+GL ++K Sbjct: 12 ERIIQTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTAERPYRK 71 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 AR+VGEV+GK HPHGD +VYD+LVR+AQ F R PLI G GNFG++D D AA RYTE+ Sbjct: 72 CARVVGEVLGKYHPHGDTAVYDALVRMAQNFSMRAPLIDGHGNFGSVDNDPPAAMRYTES 131 Query: 135 RMTQV-AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 R+ + + +L+ ++ + VDF D ++ EP V P++ P LL NG++GIAVGMAT+IP Sbjct: 132 RLQSLTTDSLLEDIESETVDFIDNFDGSQQEPTVLPARVPQLLLNGSAGIAVGMATNIPP 191 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E+ + LALI +P+I +L+ I GPDFPTGG I+ R+ I E+Y GRG +R Sbjct: 192 HNLGELIDGVLALIADPQIEERQLMSIIPGPDFPTGGQIL-GRKGIRETYTGGRGSITMR 250 Query: 254 ARWCVEEV---GRGSW-CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309 +E + GR +++TE+PYQ K+ LIE+IAEL+ K++ + DIRDES D Sbjct: 251 GVAAIETIEAKGRPDRDAVIITELPYQTNKASLIERIAELVNDKKLEGIADIRDESDRDG 310 Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369 ++ R P +++ +++ L+ ++ F L G P V+ L +L+ +L R Sbjct: 311 MRIVIELRRDAYPQVVLNNLYKLTPLQNNFSAYTLALVKGE-PVVLNLKRMLEVFLDFRI 369 Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTEN 426 E + RR+ + ++ + R IL+GLL+A ++D II +IRN +V+ L+E Sbjct: 370 ETIERRTKYLLRKAEERDHILQGLLVALNDLDAIIQLIRNAADAATARQGLVNDHGLSEI 429 Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486 Q DAIL ++LR L LE +I+ E ++L+A+ +L ++ + I E+R++KE Sbjct: 430 QADAILQMQLRRLTALEADKIRLEHEDLIAKIADYKDILQRRERVLSIIEEELRQLKERH 489 Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQA-MIEKEPITVVISNRGWIRSLKSHSVDLSA--L 543 + RRT ++ + L+ +I E V+++ G+++ + + ++ Sbjct: 490 NTP-----RRTEILDL----EGGLEDIDLIANERSVVLLTENGYLKRMPVSEFESTSRGT 540 Query: 544 HFKEG------DSLKIALHAHTTDRILLLSTDGKAYTLPAGN--LLSGRGHGEAIQLLID 595 K G +++++ + + D +LL S G Y+LPA + S G + L+ Sbjct: 541 RGKAGTKSQGEEAVRLFISCNDHDSLLLFSDRGVVYSLPAYRVPIASRAAKGTPVVQLLP 600 Query: 596 LNHNQDIVTAF---VYDSTCKLLVVSSKG-------NAFIVEESEIIANTRKGKTFLKVS 645 + + I + ++ +L+++++ G +AF S I AN G + + Sbjct: 601 IPREEQITSLLAVSAFEEDVQLVMLTTGGFIKRTPLSAF----SNIRAN---GLIAINLE 653 Query: 646 SEEKMKLV-VKVTGDHVAVVGENRKLLIFSI---DQIPEMSRGKGVRLQSYKDG 695 + ++ V + GD V + N + F I D P +GVR + +DG Sbjct: 654 DADSLRWVRLARAGDSVLIGSINGMTIHFRINDQDLRPLGRTARGVRAMALRDG 707 >gi|164510812|emb|CAK18890.1| topoisomerase IV subunit A [Staphylococcus pseudintermedius] Length = 803 Score = 367 bits (943), Expect = 3e-99, Method: Compositional matrix adjust. Identities = 199/587 (33%), Positives = 348/587 (59%), Gaps = 16/587 (2%) Query: 28 ERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLH 87 +R+ Y+ I+ERA+PD+RDG KPV RRI+++M G + F+KSA+ VG+VIG+LH Sbjct: 16 DRFGRYSKYIIQERALPDVRDGLKPVQRRILYSMYSNGNTYDKHFRKSAKTVGDVIGQLH 75 Query: 88 PHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGV 147 PHGD SVYD++VRL+Q + R+ L+ GN G+ID D AA RYTEA+++Q++E IL+ + Sbjct: 76 PHGDSSVYDAMVRLSQDWKLRHVLVEMHGNNGSIDNDPPAAMRYTEAKLSQLSEQILRDI 135 Query: 148 DEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALI 207 ++D VDF Y++ + EP+V P++FPNLL NG++GI+ G AT IP HN+ E+ A L I Sbjct: 136 NKDTVDFVPNYDDTEMEPMVLPARFPNLLVNGSTGISAGYATDIPPHNLAEVITATLKYI 195 Query: 208 DNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWC 267 DNP++++++L++YI GPDFPTGG IV+ + I ++Y G+G VRA+ +E + G Sbjct: 196 DNPDLTVKQLMKYIKGPDFPTGG-IVQGIDGIKKAYETGKGKVVVRAKADIETLRNGRSQ 254 Query: 268 IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLME 327 I+VTEIPY+V KS L++KI EL K++ + ++RDE+ V + ++ ++ Sbjct: 255 IIVTEIPYEVNKSSLVKKIDELRADKKVEGIVEVRDETDRSGLRVAVELKKDVNATSILN 314 Query: 328 SIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRV 387 ++ +D++ + NM ++ GR P++M + I+ +L H+ EV+ RR+SF ++ + R+ Sbjct: 315 FLYKNTDLQVAYNFNMVAITEGR-PKLMGIKPIISSYLNHQIEVVTRRTSFDLKHTEERM 373 Query: 388 EILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAILNLRLRSLRKLEE 444 I++GL+ A +DE+IA+IRN K +V + TE Q +AI+ L+L L + Sbjct: 374 HIVEGLMKALSILDEVIALIRNSKNKRDAKENLVKTYDFTEAQAEAIVMLQLYRLTNTDI 433 Query: 445 YQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSR 504 ++ E D L + + +L + + I E+ E+K+ F + R + E Sbjct: 434 VALQEEYDALKQKIAALKHILENHDALLDVIKEELSEIKKQFKQP------RLSVIEEKI 487 Query: 505 ADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA---LHFKEGDSLKIALHAHTTD 561 ++ ++ ++ E + + ++ G+I+ S + S + KE D + + +T D Sbjct: 488 SEIKIDKEVIVPSETVMLSLTQEGYIKRTSLRSFNASGKEEIGLKERDGVLKIIETNTQD 547 Query: 562 RILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAF 606 ++ + G+ +P L + + G+ + ++ + ++ +V + Sbjct: 548 YAMVFTNKGRYLLIPVHKLPDVKWKDLGQHVSQIVPIEEDERVVDCY 594 >gi|319892373|ref|YP_004149248.1| Topoisomerase IV subunit A [Staphylococcus pseudintermedius HKU10-03] gi|317162069|gb|ADV05612.1| Topoisomerase IV subunit A [Staphylococcus pseudintermedius HKU10-03] Length = 803 Score = 367 bits (943), Expect = 4e-99, Method: Compositional matrix adjust. Identities = 199/587 (33%), Positives = 348/587 (59%), Gaps = 16/587 (2%) Query: 28 ERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLH 87 +R+ Y+ I+ERA+PD+RDG KPV RRI+++M G + F+KSA+ VG+VIG+LH Sbjct: 16 DRFGRYSKYIIQERALPDVRDGLKPVQRRILYSMYSNGNTYDKHFRKSAKTVGDVIGQLH 75 Query: 88 PHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGV 147 PHGD SVYD++VRL+Q + R+ L+ GN G+ID D AA RYTEA+++Q++E IL+ + Sbjct: 76 PHGDSSVYDAMVRLSQDWKLRHVLVEMHGNNGSIDNDPPAAMRYTEAKLSQLSEQILRDI 135 Query: 148 DEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALI 207 ++D VDF Y++ + EP+V P++FPNLL NG++GI+ G AT IP HN+ E+ A L I Sbjct: 136 NKDTVDFVPNYDDTEMEPMVLPARFPNLLVNGSTGISAGYATDIPPHNLAEVITATLKYI 195 Query: 208 DNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWC 267 DNP++++++L++YI GPDFPTGG IV+ + I ++Y G+G VRA+ +E + G Sbjct: 196 DNPDLTVKQLMKYIKGPDFPTGG-IVQGIDGIKKAYETGKGKVVVRAKADIETLRNGRSQ 254 Query: 268 IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLME 327 I+VTEIPY+V KS L++KI EL K++ + ++RDE+ V + ++ ++ Sbjct: 255 IIVTEIPYEVNKSSLVKKIDELRADKKVEGIVEVRDETDRSGLRVAVELKKDVNATSILN 314 Query: 328 SIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRV 387 ++ +D++ + NM ++ GR P++M + I+ +L H+ EV+ RR+SF ++ + R+ Sbjct: 315 FLYKNTDLQVAYNFNMVAITEGR-PKLMGIKPIISSYLNHQIEVVTRRTSFDLKHTEERM 373 Query: 388 EILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAILNLRLRSLRKLEE 444 I++GL+ A +DE+IA+IRN K +V + TE Q +AI+ L+L L + Sbjct: 374 HIVEGLMKALSILDEVIALIRNSKNKRDAKENLVKTYDFTEAQAEAIVMLQLYRLTNTDI 433 Query: 445 YQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSR 504 ++ E D L + + +L + + I E+ E+K+ F + R + E Sbjct: 434 VALQEEYDALKQKIAALKHILENHDALLDVIKEELSEIKKQFKQP------RLSVIEEKI 487 Query: 505 ADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA---LHFKEGDSLKIALHAHTTD 561 ++ ++ ++ E + + ++ G+I+ S + S + KE D + + +T D Sbjct: 488 SEIKIDKEVIVPSETVMLSLTQEGYIKRTSLRSFNASGKEEIGLKERDGVLKIIETNTQD 547 Query: 562 RILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAF 606 ++ + G+ +P L + + G+ + ++ + ++ +V + Sbjct: 548 YAMVFTNKGRYLLIPVHKLPDVKWKDLGQHVSQIVPIEEDERVVDCY 594 >gi|295394841|ref|ZP_06805054.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Brevibacterium mcbrellneri ATCC 49030] gi|294972174|gb|EFG48036.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Brevibacterium mcbrellneri ATCC 49030] Length = 882 Score = 367 bits (943), Expect = 4e-99, Method: Compositional matrix adjust. Identities = 220/642 (34%), Positives = 357/642 (55%), Gaps = 45/642 (7%) Query: 8 NSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLD 67 ++ +V V+ V L ++ YL YA+S I RA+PD RDG KPVHRR+++AM + G Sbjct: 14 DAQGVVASRVEKVDLNLEMQRSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMYDGGYR 73 Query: 68 FGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAA 127 + K +R+VG+V+G+ HPHGD ++YD+LVRL QP+ RYPLI GQGNFG+ D AA Sbjct: 74 PDRNYSKCSRVVGDVMGQYHPHGDSAIYDALVRLVQPWAMRYPLIDGQGNFGSAGNDGAA 133 Query: 128 AYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGM 187 A RYTE +M ++ +++ ++ED VDF+D Y+ + EPV P++FPNLL NG++GIAVGM Sbjct: 134 APRYTECKMAPLSLEMVRDIEEDTVDFQDNYDGRNQEPVYLPARFPNLLVNGSAGIAVGM 193 Query: 188 ATSIPSHNVQEICEAALALIDNPEIS----IEKLLEYIIGPDFPTGGIIVESRESIVESY 243 AT+IP HN++E+ A L+ +P+ + +E LL I GPDFP G I+ R+ I ++Y Sbjct: 194 ATNIPPHNLREVAAGAQWLLAHPDATNDEALEALLGIIKGPDFPNGATIL-GRKGIEDAY 252 Query: 244 RLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD 303 R GRG RA VEE+ +G C+VVTE+PY V L KIA + ++ + D+RD Sbjct: 253 RTGRGSITQRAVVEVEEI-QGRTCLVVTELPYMVNPDTLANKIASYVKDGKVAGIADLRD 311 Query: 304 ESAEDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGIL 361 ES+ R+V+ K R +++ +++ + ++ F NM L + VP+ + +D L Sbjct: 312 ESSGRTGQRLVIVLK-RDAVAKVVLNNLYKHTQLQENFSANMLAL-VDNVPRTLSIDAFL 369 Query: 362 KEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMV 418 + W+ H+ +V+ RR+ FR++ + R IL+G L A +DE+IA+IR + D+ + ++ Sbjct: 370 RLWVKHQIDVIVRRTRFRLKKAEERAHILRGYLKALSALDEVIALIRRSPSSDEARTGLM 429 Query: 419 SRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACE 478 + E Q +AIL+L+LR L LE +I+ E +KI+ L+ + +N+I Sbjct: 430 ELLDVDEIQANAILDLQLRRLAALERLKIEE-------EAQKIEELI----KDYNEILAT 478 Query: 479 IREVKEIFSKSTDL------GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRS 532 +EI S+ D RRT ++ D + +I +E + V I+ G+ + Sbjct: 479 PARQREIVSEELDAVVQRYGDDRRTKI--LAGFDGDVSMEDLIPEEEVVVTITRGGYAKR 536 Query: 533 LKSH--------SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR 584 +S ++ + D ++ T + +L + G+ Y A L G Sbjct: 537 TQSALYRAQHRGGKGITGARLRGDDVVEQFFVTSTHNWLLFFTNTGRVYRAKAYELPEGM 596 Query: 585 --GHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKG 621 G+ + L+ L +++I YD+ L++ + G Sbjct: 597 RDAKGQHVANLLALQPDEEIAEVLSIPDYDAAQYLMLATKSG 638 >gi|9230567|gb|AAF85904.1| topoisomerase IV subunit A [Streptococcus pneumoniae] Length = 823 Score = 367 bits (943), Expect = 4e-99, Method: Compositional matrix adjust. Identities = 223/709 (31%), Positives = 400/709 (56%), Gaps = 33/709 (4%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 N++ +SL + ER+ Y+ I++RA+PD+RDG KPV RRI+++M++ F +++KS Sbjct: 3 NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 62 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 A+ VG ++G HPHGD S+YD++VR++Q + R L+ GN G++DGD AA RYTEAR Sbjct: 63 AKSVGNIMGNFHPHGDFSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 ++++A +LQ ++++ V F +++ + EP V P+ FPNLL NG++GI+ G AT IP HN Sbjct: 123 LSEIAGYLLQDIEKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 182 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 + E+ +AA+ +ID+P I+KL+E++ GPDFPTG II + R+ I ++Y G+G VR++ Sbjct: 183 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAII-QGRDEIKKAYETGKGRVVVRSK 241 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315 +E++ G IV+TEIPY++ K+ L++KI ++ + ++ + ++RDES D + Sbjct: 242 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 301 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 + + +L++ +F +D++ + NM + P+ + + IL ++AHRREV+ R Sbjct: 302 LKKDANTELVLNYLFKYTDLQINYNFNMVAID-NFTPRQVGIVPILSSYIAHRREVILAR 360 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432 S F + ++R+ I++GL+ +DE+IA+IR N+ K + + TE Q +AI+ Sbjct: 361 SRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIV 420 Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492 L+L L + ++ E L + + +++ + +N + E+REVK+ F+ Sbjct: 421 TLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP--- 477 Query: 493 GRRRTTFCEVSRA---DKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FK 546 R ++ + ++A D A+L I +E V ++ G+I+ S S L + Sbjct: 478 --RLSSLEDTAKAIEIDTASL----IAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKR 531 Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIV 603 + D L A TT +L+ ++ G P L R GE + Q + + N++I+ Sbjct: 532 DDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEIL 591 Query: 604 TAFV---YDSTCKLLVVSSKGNAFIVEESEIIA-NTRKGKT--FLKVSSE-EKMKLVVKV 656 V +D V+ G VE E T + K+ + K+ + +++ V + Sbjct: 592 YVEVLDQFDDATTYFAVTRLGQIKRVERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPI 651 Query: 657 TGDHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDGGI--SDVIC 702 D+V +V +N L F+I+++P + ++ GV+ + K+ + S IC Sbjct: 652 KLDYVVLVSQNGYALRFNIEKVPVVGAKAAGVKAMNLKEDDVLQSGFIC 700 >gi|292655723|ref|YP_003535620.1| DNA gyrase subunit A [Haloferax volcanii DS2] gi|291370320|gb|ADE02547.1| DNA gyrase subunit A [Haloferax volcanii DS2] Length = 862 Score = 367 bits (942), Expect = 4e-99, Method: Compositional matrix adjust. Identities = 251/710 (35%), Positives = 397/710 (55%), Gaps = 59/710 (8%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 VK + +E+ Y+ YA+S I RA+PD+RDG KPVHRRI++AM + G+ ++ +KS+ Sbjct: 19 VKNARIEDEMEQSYIDYAMSVIAGRALPDVRDGLKPVHRRILYAMHQAGVTSNSSHRKSS 78 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 IVGE +G HPHGD ++YD+L R+AQ F RYPL+ GQGNFG++DGD AA RYTEARM Sbjct: 79 SIVGETMGDYHPHGDSAIYDTLARMAQDFSMRYPLVDGQGNFGSVDGDPPAAMRYTEARM 138 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 + +AE +L +D+D VDF+ Y++ EP V PS FPNLL NG+SGIAVGM+T+IP HN+ Sbjct: 139 SPIAEELLDDIDKDTVDFQSNYDDRKQEPTVLPSSFPNLLVNGSSGIAVGMSTNIPPHNL 198 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ +A + LI+NP+ ++ L+E+I GPDFPTG IV R ++ ++Y+ GRG RVRA + Sbjct: 199 GEVVDATVELIENPDATVADLMEHIKGPDFPTGANIV-GRNAVHKAYKTGRGRVRVRADY 257 Query: 257 CV-EEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLF 314 V EE GR IV+ E+PYQ K+RLIE+IA+ + +I + DIRDES D +R+V+ Sbjct: 258 DVFEEEGR----IVINELPYQENKARLIERIADDVNEGKIEGIRDIRDESDRDGIRVVIE 313 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 K + ++++ + + +E+ F + +N+ + PQV+ L L+ +L HRR+V+ R Sbjct: 314 LKRGVMAE--VVKNQLLDNHLESTFGV-INLALVDGQPQVLTLKETLEHYLDHRRDVVRR 370 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVM------------VS 419 RS + + + R IL G L A NID+++ IRN D K + + Sbjct: 371 RSEYELAEAEDRAHILDGRLKALDNIDDVVETIRNSESRDDAKAALRGEVEVEVGGEPLP 430 Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479 F +E Q + I++++L SL +E +I++E +++ A E+++++L + I E+ Sbjct: 431 TFDFSEEQANHIVSMQLGSLTSMEAAEIEAEYEDVQATIERLETILGDQSELDAVIESEL 490 Query: 480 REVKEIFSKSTDLGRRRTTFC----EVSRAD--------KATLQQAMIEKEPITVVISNR 527 ++K+ ++ RRT+F EV+RAD + I++ P++ Sbjct: 491 LDIKDEYADD-----RRTSFVANTGEVTRADLIPEEDVVVVVSEDDYIKRMPVS------ 539 Query: 528 GWIRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRG 585 R + KEGD++ +T D +L + G+ Y L A + +S Sbjct: 540 -RFRDQHRGGKGIIGTDLKEGDNVSSVFVTNTHDDLLCFTNHGQVYQLKAYQVPEMSRTA 598 Query: 586 HGEAIQLLIDLNHNQDIVTAFVY-----DSTCKLLVVSSKGNAFIVEESEIIANTRKGKT 640 G++ L+D + ++I TA V D L +V+ G G Sbjct: 599 RGKSAVNLLDFDDGEEI-TAVVNCDDLEDIEGYLTMVTRNGYIKRTGTDRFQNILSTGII 657 Query: 641 FLKVSSEEKMKLVVKVTGDHVAVVGENRKLLI-FSIDQIPEMSR-GKGVR 688 K+ +++ V G+ V+G R + I F D++ M R +GVR Sbjct: 658 ATKLDEGDELVDVEVTGGESDLVIGTERGMSIRFDEDEVRAMGRSARGVR 707 >gi|194098847|ref|YP_002001910.1| DNA gyrase subunit A [Neisseria gonorrhoeae NCCP11945] gi|193934137|gb|ACF29961.1| DNA gyrase subunit A [Neisseria gonorrhoeae NCCP11945] Length = 916 Score = 367 bits (942), Expect = 4e-99, Method: Compositional matrix adjust. Identities = 225/628 (35%), Positives = 351/628 (55%), Gaps = 65/628 (10%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 VSL + + YL YA+S I RA+PD+RDG KPVHRR+++AM E+ ++ AA+KKSARIV Sbjct: 19 VSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIV 78 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGD +VY ++VR+AQ F RY LI GQGNFG++DG +AAA RYTE RM ++ Sbjct: 79 GDVIGKYHPHGDFAVYGTIVRMAQNFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMAKI 138 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 + +L ++E+ V+F Y+ + EP+V P++FP LL NG+SGIAVGMAT+IP HN+ + Sbjct: 139 SHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGSSGIAVGMATNIPPHNLTDT 198 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 A L L+D P+ I++L++ I PDFPTG I + E Y+ GRG +R + +E Sbjct: 199 INACLRLLDEPKTEIDELIDIIQAPDFPTGATIY-GLGGVREGYKTGRGRVVMRGKTHIE 257 Query: 260 EVGRGS--WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317 +G+ IV+ EIPYQV K++L+EKI +L+ K + + ++RDES + V+ Sbjct: 258 PIGKNGEREAIVIDEIPYQVNKAKLVEKIGDLVREKTLEGISELRDESDKSGMRVVIELK 317 Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377 R+ + ++++ ++ L+ ++ F +NM VL G+ P+++ L IL E+L HRREV+ RR+ Sbjct: 318 RNENAEVVLNQLYKLTPLQDSFGINMVVLVDGQ-PRLLNLKQILSEFLRHRREVVTRRTL 376 Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSR-------------- 420 FR++ I +G +A NIDEII +I+ N + K +++R Sbjct: 377 FRLKKARHEGHIAEGKAVALSNIDEIIKLIKESPNAAEAKEKLLARPWRSSLVEEMLTRS 436 Query: 421 ----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458 + L+E Q DAIL + LR+L L++ +I NL+ + Sbjct: 437 GLDLEMMRPEGLAANIGLKKQGYYLSEIQADAILRMSLRNLTGLDQKEIIESYKNLMGKI 496 Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518 +L+ ++ I E+ E+K T+ G R + D A + +I + Sbjct: 497 IDFVDILSKPERITQIIRDELEEIK------TNYGDERRSEINPFGGDIA--DEDLIPQR 548 Query: 519 PITVVISNRGWIRSLKSHSVDL--------SALHFKEGDSLKIALHAHTTDRILLLSTDG 570 + V +++ G+I++ + A K+ D ++ A+T D ++ + G Sbjct: 549 EMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDYLMCFTNLG 608 Query: 571 KA-----YTLPAGNLLS-GRGHGEAIQL 592 K Y LP G S GR IQL Sbjct: 609 KCHWIKVYKLPEGGRNSRGRPINNVIQL 636 >gi|73916884|gb|AAZ93310.1| topoisomerase IV subunit A [Streptococcus pneumoniae] gi|73916928|gb|AAZ93332.1| topoisomerase IV subunit A [Streptococcus pneumoniae] Length = 821 Score = 367 bits (942), Expect = 4e-99, Method: Compositional matrix adjust. Identities = 223/709 (31%), Positives = 399/709 (56%), Gaps = 33/709 (4%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 N++ +SL + ER+ Y+ I++RA+PD+RDG KPV RRI+++M++ F +++KS Sbjct: 1 NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 60 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 A+ VG ++G HPHGD S+YD++VR++Q + R L+ GN G++DGD AA RYTEAR Sbjct: 61 AKSVGNIMGNFHPHGDYSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 120 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 ++++A +LQ ++++ V F +++ + EP V P+ FPNLL NG++GI+ G AT IP HN Sbjct: 121 LSEIAGYLLQDIEKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 180 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 + E+ +AA+ +ID+P I+KL+E++ GPDFPTG II + R+ I ++Y G+G VR++ Sbjct: 181 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAII-QGRDEIKKAYETGKGRVVVRSK 239 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315 +E++ G IV+TEIPY++ K+ L++KI ++ + ++ + ++RDES D + Sbjct: 240 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 299 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 + + +L++ +F +D++ + NM + P+ + + IL ++AHRREV+ R Sbjct: 300 LKKDANTELVLNYLFKYTDLQINYNFNMVAID-NFTPRQVGIVPILSSYIAHRREVILAR 358 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432 S F + ++R+ I++GL+ +DE+IA+IR N+ K + + TE Q +AI+ Sbjct: 359 SRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIV 418 Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492 L+L L + ++ E L + + +++ + +N + E+REVK+ F+ Sbjct: 419 TLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP--- 475 Query: 493 GRRRTTFCEVSRA---DKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FK 546 R ++ + ++A D A+L I +E V ++ G+I+ S S L + Sbjct: 476 --RLSSLEDTAKAIEIDTASL----IAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKR 529 Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIV 603 + D L A TT +L+ ++ G P L R GE + Q + + N++I+ Sbjct: 530 DDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEIL 589 Query: 604 TAFV---YDSTCKLLVVSSKGNAFIVEESEIIA-NTRKGKT--FLKVSSE-EKMKLVVKV 656 V +D V+ G VE E T + K+ + K+ + +++ V + Sbjct: 590 YVEVLDQFDDATTYFAVTRLGQIKRVERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPI 649 Query: 657 TGDHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDGGI--SDVIC 702 D V +V +N L F+I+++P + ++ GV+ + K+ + S IC Sbjct: 650 KLDDVVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSGFIC 698 >gi|123966386|ref|YP_001011467.1| DNA gyrase subunit A [Prochlorococcus marinus str. MIT 9515] gi|123200752|gb|ABM72360.1| DNA gyrase/topoisomerase IV, subunit A [Prochlorococcus marinus str. MIT 9515] Length = 863 Score = 367 bits (942), Expect = 4e-99, Method: Compositional matrix adjust. Identities = 257/726 (35%), Positives = 405/726 (55%), Gaps = 57/726 (7%) Query: 7 SNSNTLVEENVKAVS--LRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEM 64 S ++L E N + + LR + YL YA+S I RA+PD RDG KPVHRRI++AM E+ Sbjct: 7 SGDSSLSENNERIIQTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYEL 66 Query: 65 GLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGD 124 GL G ++K AR+VGEV+GK HPHGD +VYD+LVR+AQ F R PLI G GNFG++D D Sbjct: 67 GLTSGRPYRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRMPLIDGHGNFGSVDND 126 Query: 125 SAAAYRYTEARMTQVA-ELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGI 183 AA RYTE+R+ + E +L+ ++ + VDF D ++ EP V P++ P LL NG+SGI Sbjct: 127 PPAAMRYTESRLQSLTDESLLEDIESETVDFSDNFDGSQQEPTVLPARIPQLLLNGSSGI 186 Query: 184 AVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESY 243 AVGMAT+IP HN+ E+ ++I NP + ++L E I GPDFPTGG I+ R+ I E++ Sbjct: 187 AVGMATNIPPHNLGELINGLKSIIKNPLMEDKELFELIKGPDFPTGGQIL-GRDGIKETF 245 Query: 244 RLGRGGFRVRARWCVEEV---GRGSW-CIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLE 299 + GRG +R +E++ GR +++TE+P+Q K+ LIE+IA+L+ K++ + Sbjct: 246 KSGRGSITMRGVADIEQIKSPGRAEKDAVIITELPFQTNKAALIERIADLVNDKKLEGIS 305 Query: 300 DIRDESAED-VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLD 358 DIRDES D +RIV+ K R P +++ ++F L+ ++ F N+ L G P + L Sbjct: 306 DIRDESDRDGMRIVIELK-RDAYPQVVLNNLFKLTPLQNNFSANILALVNGE-PTTLSLR 363 Query: 359 GILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMV 418 +L +L R + RR++F ++ + R I+KGLL+A +D II +IR+ K Sbjct: 364 KMLDVFLDFRIVTIKRRTTFLLKKAEERDHIIKGLLLALEAMDNIINLIRS---AKDTTS 420 Query: 419 SRFSLTEN------QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQW 472 +R L ++ Q DAIL ++LR L LE +IKSE D L + ++L K + Sbjct: 421 AREQLQKDHELSVIQADAILQMQLRRLTALEADKIKSEHDELTRKITDYKNILQD-KDRI 479 Query: 473 NQIAC-EIREVKEIFSKSTDLGRRRTTFCEVSRA-DKATLQQAMIEKEPITVVISNRGWI 530 N+I E+ ++ E FS R+T + D L I E V++++ G++ Sbjct: 480 NEIILEELSKIDERFSSP-----RKTEILNLGGGLDDIDL----IANERSVVLLTSAGYL 530 Query: 531 R--------SLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL-L 581 + S S + +E D + + + + D +LL S G AY LPA + + Sbjct: 531 KRMPVSEFESTSRGSRGKAGTKNQEDDEVNLFISCNDHDTLLLFSDRGVAYALPAYRVPM 590 Query: 582 SGRGH--GEAIQLLIDLNHNQ--DIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTR- 636 S R ++QLL Q IV+ +D+ LL+++ G ++ + + A ++ Sbjct: 591 SSRTAKGTPSVQLLPIPREEQITSIVSVESFDNDRYLLMLTKAG---FIKRTPLSAFSKI 647 Query: 637 KGKTFLKVSSEEKMKLV-VKVT--GDHVAVVGENRKLLI-FSIDQI---PEMSRGKGVRL 689 + + ++ EE L V+++ GD V ++G ++ + I F +D P +GV+ Sbjct: 648 RSNGLIAINLEEGDALTWVRLSKEGDSV-LIGSSKGMTIHFRLDNNELRPLGRTARGVKS 706 Query: 690 QSYKDG 695 + KDG Sbjct: 707 MNLKDG 712 >gi|183603468|ref|ZP_02715087.2| DNA topoisomerase IV, A subunit [Streptococcus pneumoniae CDC0288-04] gi|183574650|gb|EDT95178.1| DNA topoisomerase IV, A subunit [Streptococcus pneumoniae CDC0288-04] Length = 826 Score = 367 bits (942), Expect = 4e-99, Method: Compositional matrix adjust. Identities = 223/709 (31%), Positives = 399/709 (56%), Gaps = 33/709 (4%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 N++ +SL + ER+ Y+ I++RA+PD+RDG KPV RRI+++M++ F +++KS Sbjct: 6 NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 65 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 A+ VG ++G HPHGD S+YD++VR++Q + R L+ GN G++DGD AA RYTEAR Sbjct: 66 AKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 125 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 ++++A +LQ ++++ V F +++ + EP V P+ FPNLL NG++GI+ G AT IP HN Sbjct: 126 LSEIAGYLLQDIEKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 185 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 + E+ +AA+ +ID+P I+KL+E++ GPDFPTG II + R+ I ++Y G+G VR++ Sbjct: 186 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAII-QGRDEIKKAYETGKGRVVVRSK 244 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315 +E++ G IV+TEIPY++ K+ L++KI ++ + ++ + ++RDES D + Sbjct: 245 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 304 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 + + +L++ +F +D++ + NM + P+ + + IL ++AHRREV+ R Sbjct: 305 LKKDANTELVLNYLFKYTDLQINYNFNMVAID-NFTPRQVGIVPILSSYIAHRREVILAR 363 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432 S F + ++R+ I++GL+ +DE+IA+IR N+ K + + TE Q +AI+ Sbjct: 364 SRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIV 423 Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492 L+L L + ++ E L + + +++ + +N + E+REVK+ F+ Sbjct: 424 TLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP--- 480 Query: 493 GRRRTTFCEVSRA---DKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FK 546 R ++ + ++A D A+L I +E V ++ G+I+ S S L + Sbjct: 481 --RLSSLEDTAKAIEIDTASL----IAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKR 534 Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIV 603 + D L A TT +L+ ++ G P L R GE + Q + + N++I+ Sbjct: 535 DDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEIL 594 Query: 604 TAFV---YDSTCKLLVVSSKGNAFIVEESEIIA-NTRKGKT--FLKVSSE-EKMKLVVKV 656 V +D V+ G VE E T + K+ + K+ + +++ V + Sbjct: 595 YVEVLDQFDDATTYFAVTRLGQIKRVERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPI 654 Query: 657 TGDHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDGGI--SDVIC 702 D V +V +N L F+I+++P + ++ GV+ + K+ + S IC Sbjct: 655 KLDDVVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSGFIC 703 >gi|58696764|ref|ZP_00372302.1| DNA gyrase, A subunit [Wolbachia endosymbiont of Drosophila simulans] gi|58537049|gb|EAL60183.1| DNA gyrase, A subunit [Wolbachia endosymbiont of Drosophila simulans] Length = 854 Score = 367 bits (942), Expect = 4e-99, Method: Compositional matrix adjust. Identities = 222/603 (36%), Positives = 338/603 (56%), Gaps = 65/603 (10%) Query: 61 MSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGN 120 MS G D G +KK+ARIVG+V+GK HPHGD ++YDSLVR+AQ F PLI GQGNFG+ Sbjct: 1 MSRAGFDAGKPYKKAARIVGDVMGKYHPHGDAAIYDSLVRMAQDFSLLLPLIDGQGNFGS 60 Query: 121 IDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGT 180 IDGD A+ RYTEAR+ +V+ +L +DED VDFR Y+ ++EPVV P++FPNLL NG Sbjct: 61 IDGDPPASMRYTEARLQKVSHFLLNDIDEDTVDFRPNYDGNETEPVVLPAEFPNLLVNGA 120 Query: 181 SGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIV 240 SG+AVGMAT+IPSHN+ EI +A + +DNPE+++++LLE + GPDFPTGG I+ R I Sbjct: 121 SGVAVGMATNIPSHNLGEIIDACMLYVDNPEVTLDELLEVMPGPDFPTGGTIL-GRSGIR 179 Query: 241 ESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLED 300 ++ GRG V+ + +E++ + IV+ EIPYQV K +LIEKI EL+ KRI + + Sbjct: 180 SAFATGRGSIVVQGKTHIEDLPQDRQAIVIDEIPYQVNKVKLIEKIGELVKEKRIDGITE 239 Query: 301 IRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGI 360 IRDES + V+ R+ + ++ I L+ + + F +N VL+ R P +M L I Sbjct: 240 IRDESDKSGIRVVIDLRRNAEASFILNQILGLTPLRSSFSVNTLVLNNNR-PALMSLKEI 298 Query: 361 LKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---- 416 ++ ++ R+EVL RR+ FR++ + I GL IA L+IDE+I IIR P Sbjct: 299 IEAFIDFRKEVLIRRTEFRLRKTREKAHIYIGLYIAVLSIDEVIKIIRGAKDPAEASREL 358 Query: 417 ----------------MVSR---------FSLTENQVDAILNLRLRSLRKLEEYQIKSEL 451 ++S + LTE Q+ AIL+++L+ L LE+ ++++EL Sbjct: 359 LNKEWKTSNEINTIIELISDSASFLKDGVYRLTELQIKAILDMKLQRLTGLEKDKLEAEL 418 Query: 452 DNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQ 511 +++ ++ + L SG++ +I ++E+K F+ R+T+ E +D Sbjct: 419 SSMINLIKEYIAFLGSGEKLMKEIKNNLQEIKNRFAVP-----RKTSIEE---SDTDIEA 470 Query: 512 QAMIEKEPITVVISNRGWIRSLK-SH-------SVDLSALHFKEGDSLKIALHAHTTDRI 563 + +I +E + + ++ G+I+ +K SH KE D + +T + Sbjct: 471 EDLIPQEDMVITVTMNGYIKRVKLSHYRTQRRGGKGKLGQGLKEEDVITELFVTNTHTSV 530 Query: 564 LLLSTDGKAYTLPAGNL----LSGRG----------HGEAIQLLIDL----NHNQDIVTA 605 L S G+ Y L L + RG GE I ++ L + NQ+IV Sbjct: 531 LFFSNIGRVYRLKVYKLPLAEPTARGRALVNIFPLAEGETITNIMPLPSENDENQNIVFT 590 Query: 606 FVY 608 Y Sbjct: 591 TAY 593 >gi|169832887|ref|YP_001694308.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae Hungary19A-6] gi|225854361|ref|YP_002735873.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae JJA] gi|225856522|ref|YP_002738033.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae P1031] gi|168995389|gb|ACA36001.1| DNA topoisomerase IV, A subunit [Streptococcus pneumoniae Hungary19A-6] gi|225723240|gb|ACO19093.1| DNA topoisomerase IV, A subunit [Streptococcus pneumoniae JJA] gi|225725136|gb|ACO20988.1| DNA topoisomerase IV, A subunit [Streptococcus pneumoniae P1031] Length = 826 Score = 367 bits (942), Expect = 4e-99, Method: Compositional matrix adjust. Identities = 223/709 (31%), Positives = 399/709 (56%), Gaps = 33/709 (4%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 N++ +SL + ER+ Y+ I++RA+PD+RDG KPV RRI+++M++ F +++KS Sbjct: 6 NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 65 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 A+ VG ++G HPHGD S+YD++VR++Q + R L+ GN G++DGD AA RYTEAR Sbjct: 66 AKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 125 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 ++++A +LQ ++++ V F +++ + EP V P+ FPNLL NG++GI+ G AT IP HN Sbjct: 126 LSEIAGYLLQDIEKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 185 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 + E+ +AA+ +ID+P I+KL+E++ GPDFPTG II + R+ I ++Y G+G VR++ Sbjct: 186 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAII-QGRDEIKKAYETGKGRVVVRSK 244 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315 +E++ G IV+TEIPY++ K+ L++KI ++ + ++ + ++RDES D + Sbjct: 245 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 304 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 + + +L++ +F +D++ + NM + P+ + + IL ++AHRREV+ R Sbjct: 305 LKKDANTELVLNYLFKYTDLQINYNFNMVAID-NFTPRQVGIVPILSSYIAHRREVILAR 363 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432 S F + ++R+ I++GL+ +DE+IA+IR N+ K + + TE Q +AI+ Sbjct: 364 SRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIV 423 Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492 L+L L + ++ E L + + +++ + +N + E+REVK+ F+ Sbjct: 424 TLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP--- 480 Query: 493 GRRRTTFCEVSRA---DKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FK 546 R ++ + ++A D A+L I +E V ++ G+I+ S S L + Sbjct: 481 --RLSSLEDTAKAIEIDTASL----IAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKR 534 Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIV 603 + D L A TT +L+ ++ G P L R GE + Q + + N++I+ Sbjct: 535 DDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEIL 594 Query: 604 TAFV---YDSTCKLLVVSSKGNAFIVEESEIIA-NTRKGKT--FLKVSSE-EKMKLVVKV 656 V +D V+ G VE E T + K+ + K+ + +++ V + Sbjct: 595 YVEVLDQFDDATTYFAVTRLGQIKRVERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPI 654 Query: 657 TGDHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDGGI--SDVIC 702 D V +V +N L F+I+++P + ++ GV+ + K+ + S IC Sbjct: 655 KLDDVVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSGFIC 703 >gi|307709029|ref|ZP_07645489.1| DNA topoisomerase IV, A subunit [Streptococcus mitis SK564] gi|307620365|gb|EFN99481.1| DNA topoisomerase IV, A subunit [Streptococcus mitis SK564] Length = 826 Score = 367 bits (942), Expect = 4e-99, Method: Compositional matrix adjust. Identities = 222/709 (31%), Positives = 398/709 (56%), Gaps = 33/709 (4%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 N++ +SL + ER+ Y+ I++RA+PD+RDG KPV RRI+++M++ G F +++KS Sbjct: 3 NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDGNTFDKSYRKS 62 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 A+ VG ++G HPHGD S+YD++VR++Q + R L+ GN G++DGD AA RYTEAR Sbjct: 63 AKSVGNIMGNFHPHGDFSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 ++++A +LQ +++ V F +++ + EP V P+ FPNLL NG++GI+ G AT IP HN Sbjct: 123 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 182 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 + E+ +A + +ID+P ++KL+E++ GPDFPTGGII + R+ I ++Y G+G VR++ Sbjct: 183 LAEVIDATVYMIDHPTAKVDKLMEFLPGPDFPTGGII-QGRDEIKKAYETGKGRVVVRSK 241 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315 +E++ G IV+TEIPY++ K+ L++KI ++ + ++ + ++RDES D + Sbjct: 242 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 301 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 + + +L++ +F +D++ + NM + P+ + + IL ++AHRREV+ R Sbjct: 302 LKKDANTELVLNYLFKYTDLQINYNFNMVAID-NFTPRQVGIVPILSSYIAHRREVILAR 360 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432 S F + ++R+ I++GL+ +DE+IA+IR N+ K + + TE Q +AI+ Sbjct: 361 SRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIV 420 Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492 L+L L + ++ E L + + +++ + +N + E+REVK+ F+ Sbjct: 421 TLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP--- 477 Query: 493 GRRRTTFCEVSRA---DKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FK 546 R ++ + ++A D A+L I +E V ++ G+I+ S S L + Sbjct: 478 --RLSSLEDTAKAIEIDTASL----IAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKR 531 Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIV 603 + D L A TT +L+ ++ G P L R GE + Q + + N++++ Sbjct: 532 DDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEVI 591 Query: 604 TAFV---YDSTCKLLVVSSKGNAFIVEESEIIA-NTRKGKT--FLKVSSE-EKMKLVVKV 656 V +D + G VE E T K K+ + K+ E +++ V + Sbjct: 592 YVEVVDQFDDATTYFAATRLGQIKRVERKEFTPWRTYKSKSVKYAKLKDETDQIVAVAPI 651 Query: 657 TGDHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDGGI--SDVIC 702 D V ++ +N L F+I+++P + ++ GV+ + K+ + S IC Sbjct: 652 KLDDVLLISQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSAFIC 700 >gi|320093842|ref|ZP_08025685.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Actinomyces sp. oral taxon 178 str. F0338] gi|319979231|gb|EFW10731.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Actinomyces sp. oral taxon 178 str. F0338] Length = 821 Score = 367 bits (942), Expect = 4e-99, Method: Compositional matrix adjust. Identities = 201/497 (40%), Positives = 302/497 (60%), Gaps = 14/497 (2%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 +EN+ + + + +L YA+S I RA+PD RDG KPV RRI++ M +MGL Sbjct: 14 DENISEIDVSAEMRGSFLEYAVSVIYARALPDARDGLKPVQRRILYQMDQMGLRPDRGHV 73 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KS R+VGEV+GKLHPHGD ++Y++LVRLAQPF R PL+ G GNFG++D D AA RYTE Sbjct: 74 KSQRVVGEVMGKLHPHGDSAIYEALVRLAQPFNLRLPLVDGHGNFGSLD-DGPAAARYTE 132 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 ARM A ++ G+ ED VDF Y+ + ++P V P+ FP LL NG SGIAVGMAT+I Sbjct: 133 ARMAPAAVDLVTGLGEDTVDFVPNYDNQFTQPEVLPAAFPQLLVNGASGIAVGMATNIAP 192 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E A+ L+D+P+ ++ L+ ++ GPD P GG+IV E + E+Y GRG F+ R Sbjct: 193 HNLAETIAGAVHLLDHPDATVADLMRFVPGPDLPEGGVIV-GLEGVKEAYETGRGAFKTR 251 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD--ESAEDVRI 311 A+ VE V ++VT++PY V ++IEKI E + A R+ + +++ + +R+ Sbjct: 252 AKVSVERVTARKMGLIVTQLPYMVGPEKVIEKIKENVGAGRLKGISSVQNLTDRIHGLRL 311 Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371 V+ KN +P+ +++ ++ + +E F +N L G+ PQVM L IL+ ++ HR +V Sbjct: 312 VIEVKN-GFNPEAVLQQLYQRTPLEDSFSINAVALVGGQ-PQVMGLKQILRVFVDHRLDV 369 Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQV 428 RRS FR+ + R+ +++GLLIA L+ID++IAIIR+ D + +++ F L++ Q Sbjct: 370 TTRRSRFRLGKCEERLHLVEGLLIAILDIDDVIAIIRSSDDADVARERLMTAFDLSQAQA 429 Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488 D IL LRLR L K ++++E D L A ++ +L S + + E+ EV E Sbjct: 430 DYILELRLRRLTKFSRIELEAERDELAARIAELREVLESPELLRALVKRELAEVSERLGT 489 Query: 489 STDLGRRRTTFCEVSRA 505 RRT S A Sbjct: 490 P-----RRTVLLASSGA 501 >gi|25026571|ref|NP_736625.1| DNA gyrase subunit A [Corynebacterium efficiens YS-314] gi|259508295|ref|ZP_05751195.1| dna topoisomerase (ATP-hydrolysing) [Corynebacterium efficiens YS-314] gi|23491850|dbj|BAC16825.1| putative DNA gyrase subunit A [Corynebacterium efficiens YS-314] gi|259164113|gb|EEW48667.1| dna topoisomerase (ATP-hydrolysing) [Corynebacterium efficiens YS-314] Length = 863 Score = 367 bits (942), Expect = 4e-99, Method: Compositional matrix adjust. Identities = 242/779 (31%), Positives = 422/779 (54%), Gaps = 49/779 (6%) Query: 6 ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65 +S+ N + ++ + + ++ Y+ YA+S I RA+P++RDG KPVHRR+++AM + G Sbjct: 1 MSDDNNETFDRIQPIDINEEMQSSYIDYAMSVIVGRALPEVRDGMKPVHRRVLYAMYDNG 60 Query: 66 LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125 ++ KSA+ V + +G HPHGD ++YD+LVR+AQP+ RYPL+ GQGNFG+ D Sbjct: 61 YRPDRSYVKSAKPVADTMGNYHPHGDTAIYDTLVRMAQPWSMRYPLVDGQGNFGSRGNDG 120 Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185 AA RYTE RMT +A +++ + E+ V+F Y+ + +EP V PS+ PNLL NG+ GIAV Sbjct: 121 PAAMRYTECRMTPLAMEMVRDIRENTVNFSPNYDGKTTEPDVLPSRVPNLLMNGSGGIAV 180 Query: 186 GMATSIPSHNVQEICEAALALIDNPE----ISIEKLLEYIIGPDFPTGGIIVESRESIVE 241 GMAT+IP HN+ E+ +A L++NP+ ++EK +E++ GPDFPT G+I+ + I + Sbjct: 181 GMATNIPPHNLNELADAIFWLLENPDADEATALEKCMEFVKGPDFPTAGLIIGDK-GIHD 239 Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301 +Y GRG R+R +EE G + IV+TE+PYQV LI IAE + ++ + I Sbjct: 240 AYTTGRGSIRMRGVTSIEEEGNRT-VIVITELPYQVNPDNLISNIAEQVRDGKLVGISKI 298 Query: 302 RDESAEDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359 DES++ V RIV+ K R P +++ ++F S +++ F NM + G VP+ + LD Sbjct: 299 EDESSDRVGMRIVVTLK-RDAVPRVVLNNLFKHSQLQSNFGANMLSIVDG-VPRTLRLDQ 356 Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPV 416 +L+ ++AH+ EV+ RR+ +R+ ++R IL+GL+ A +DE+IA+IR ++ + Sbjct: 357 MLRYYVAHQIEVIVRRTQYRLDQAEKRAHILRGLVKALDMLDEVIALIRRSPTVEEARDG 416 Query: 417 MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476 ++S + + Q DAIL ++LR L LE +I +EL+ L + +L S ++Q + Sbjct: 417 LMSLLDVDQIQADAILEMQLRRLAALEREKIVNELNELETIIADLKDILASPERQRAIVR 476 Query: 477 CEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW------- 529 E+ E+ E + RR+ ++ A ++ +I +E + V I++ G+ Sbjct: 477 DELAEIVEKYGDE-----RRS---QIIAATGDVSEEDLIARENVVVTITSTGYAKRTKVD 528 Query: 530 -IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGH 586 +S K + K+ D ++ + T D IL + G+ Y L A L S Sbjct: 529 AYKSQKRGGKGVRGAELKQDDIVRHFFVSSTHDWILFFTNFGRVYRLKAYELPEASRTAR 588 Query: 587 GEAIQLLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLK 643 G+ + L++ + I Y+ L++ +++G ++ + G + Sbjct: 589 GQHVANLLEFQPEERIAQVIQIQTYEDAPYLVLATAQGRVKKSRLTDYESARSAGLIAIN 648 Query: 644 VSSEEKMKLVVKVT-GDHVAVVGENRKLLIFSID--QIPEMSRGK-GVRLQSYKDGGISD 699 ++ +++ V GD + + E + + F+ D Q+ M R GV+ +++G Sbjct: 649 LNDGDRLIGAALVDEGDDILLTSEYGQAIRFTADDEQLRPMGRATAGVKGMRFREG--DQ 706 Query: 700 VICFKIC-EGLTWIDSAGRSYNR----SENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753 ++ + +G + + Y + SE G RGG+G + K P+ G+ + + Sbjct: 707 LLAMSVVRDGEFLLVATSGGYGKRTPISEYSTQG----RGGLGVVTFKYTPKRGRLIGA 761 >gi|322392127|ref|ZP_08065589.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus peroris ATCC 700780] gi|321145027|gb|EFX40426.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus peroris ATCC 700780] Length = 823 Score = 367 bits (942), Expect = 4e-99, Method: Compositional matrix adjust. Identities = 224/695 (32%), Positives = 390/695 (56%), Gaps = 25/695 (3%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 N++ +SL + ER+ Y+ I++RA+PD+RDG KPV RRI+++M++ G F +++KS Sbjct: 3 NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDGNTFDKSYRKS 62 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 A+ VG ++G HPHGD S+YD++VR++Q + R L+ GN G++DGD AA RYTEAR Sbjct: 63 AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 ++++A +LQ +D+ V F +++ + EP V P+ FPNLL NG++GI+ G AT IP HN Sbjct: 123 LSEIAGYLLQDIDKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 182 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 + E+ +A + +ID+P +EKL+E++ GPDFPTG II + R+ I ++Y G+G VR++ Sbjct: 183 LAEVIDATVYMIDHPTAKVEKLMEFLPGPDFPTGAII-QGRDEIKKAYETGKGRVVVRSK 241 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315 +E++ G IV+TEIPY++ K+ L++KI E+ + ++ + ++RDES D + Sbjct: 242 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDEVRVNNKVAGIAEVRDESDRDGLRIAIE 301 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 + + +L++ +F +D++ + NM + P+ + + IL ++AHRREV+ R Sbjct: 302 LKKDANTELVLNYLFKYTDLQINYNFNMVAID-NFTPRQVGIVPILSSYIAHRREVILAR 360 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432 S F + ++R+ I++GL+ +DE+IA+IR N+ K + + TE Q +AI+ Sbjct: 361 SRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYEFTEEQAEAIV 420 Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492 L+L L + ++ E L + + +++ + +N + E+REVK+ F+ + L Sbjct: 421 TLQLYRLTNTDVVVLQEEEAELREKIAMLAAVIGDERTLYNLMKKELREVKKKFA-TPRL 479 Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FKEGD 549 T +V D +L I +E V ++ G+I+ S S L +E D Sbjct: 480 SSLEDT-AKVIEIDTVSL----IAEEETYVSVTKAGYIKRTSPRSFAASTLEEIGKREDD 534 Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIVTAF 606 L A TT +L+ +T G P L R GE + Q + + N++I+ A Sbjct: 535 RLIFTQVAKTTQHLLMFTTLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEILYAE 594 Query: 607 V---YDSTCKLLVVSSKGNAFIVEESEIIA-NTRKGKT--FLKVSSE-EKMKLVVKVTGD 659 V +D + G VE E T K K+ + K+ + +++ V + D Sbjct: 595 VVDQFDDATTYFAATRLGQIKRVERKEFTPWRTYKSKSVKYAKLKDDSDQIVAVAPIKLD 654 Query: 660 HVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYK 693 V ++ +N L F+I+++P + ++ GV+ + K Sbjct: 655 DVLLISKNGYALRFNIEEVPVVGAKAAGVKAMNLK 689 >gi|218193971|gb|EEC76398.1| hypothetical protein OsI_14033 [Oryza sativa Indica Group] gi|222626031|gb|EEE60163.1| hypothetical protein OsJ_13077 [Oryza sativa Japonica Group] Length = 872 Score = 367 bits (942), Expect = 4e-99, Method: Compositional matrix adjust. Identities = 255/775 (32%), Positives = 417/775 (53%), Gaps = 70/775 (9%) Query: 31 LAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHG 90 +AYA+S + RA+PD+RDG KPVHRRI++AM EMGL F+K AR+VGEV+GK HPHG Sbjct: 1 MAYAMSVLLGRALPDVRDGLKPVHRRILYAMHEMGLASRRPFRKCARVVGEVLGKFHPHG 60 Query: 91 DQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDED 150 D +VY++LVR+AQ F RYPL+ G GNFG+ID D AA RYTE R+ L D D Sbjct: 61 DSAVYETLVRMAQDFSMRYPLVQGHGNFGSIDADPPAAMRYTECRLDVGCFFFL---DID 117 Query: 151 A------VDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAAL 204 A VDF ++ EP + P++ P+LL NG+SGIAVGMAT+IP HN+ E+ + Sbjct: 118 AIFIIGQVDFVPNFDNSQKEPSLLPARVPSLLLNGSSGIAVGMATNIPPHNLGELVDVLS 177 Query: 205 ALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE--EVG 262 +I+NPE ++++LLE + GPDFPTGG IV + I+E+Y+ GRG +R + +E +V Sbjct: 178 VMIENPEATLQELLECMPGPDFPTGGTIV-GNQGILEAYKTGRGRVVMRGKTDIETIDVK 236 Query: 263 RGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDP 322 I++ E+PYQ KS L+E+IAEL+ K + + DIRDES V+ R DP Sbjct: 237 SKRSAIIIKEVPYQTNKSTLVERIAELVEEKVLEGISDIRDESDRSGMRVVIELKRGADP 296 Query: 323 DLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRM-Q 381 +++ +++ + +++ F NM + G+ P++M L IL+ ++ R V+ RR+ F++ Q Sbjct: 297 AIVLNNLYRHTALQSSFSCNMVAILDGQ-PKLMGLKEILQAFIDFRCSVIERRARFKLSQ 355 Query: 382 AIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAILNLRLRS 438 A++R+ I++G++I N+D +I IIR N + ++ F L++ Q +A+L++ LR Sbjct: 356 ALERK-HIVEGIVIGLDNLDSVIQIIRGTSNHAMARESLIKEFGLSDKQAEALLDITLRK 414 Query: 439 LRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWN-----------QIACEIREVKEIFS 487 L LE + E +L E K++ LL++ K + +I IRE+K ++S Sbjct: 415 LTSLERKKFVDEAKSLSEEISKLNELLSNKKLIFQGLVDGLDYLRAEINVVIRELKLMWS 474 Query: 488 -------KSTDLGRR----RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSH 536 ++TDL + R +F E S A +I E + +++S +G+++ +K + Sbjct: 475 LFKLILQEATDLKNKFATPRRSFIEDS-ASTEVDDLDIIPNEEMLLILSEKGYVKRMKPN 533 Query: 537 SVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH---------- 586 + +L K+ ++ +T+D I+ + D Y G + S R + Sbjct: 534 TFNLQNRGTIGKSVGKMRMNDNTSDFIVCQTHDHVLYFSDKGIVYSARAYKIPECTRAAT 593 Query: 587 GEAIQLLIDLNHNQDI-----VTAFVYDSTCKLLVVSSKGNAFI--VEESEIIANTRKGK 639 G + L+ L+ + I V F D +L V N +I V + A G Sbjct: 594 GTPLVQLLSLSDGERITSIVPVNEFGEDQYLVMLTV----NGYIKKVPLNAFSAIRTSGI 649 Query: 640 TFLKVSSEEKMKLVVKVTGDH-VAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGI 697 ++++ +++K V + D VA+ +N +++ + +++ + R +GV K+G Sbjct: 650 ISIQLAPGDELKWVRRCGDDDLVALASQNGMVIVNTCNKLRALGRKTRGVLAMKLKEG-- 707 Query: 698 SDVICFKICEGLTWIDSAGRSYNRSENDLLGWLG--KRGGVGSLVPKGFPRSGKF 750 + I + + +Y+R + WL G+G VP R G F Sbjct: 708 DKMASMDIIPATSH--NMPETYSRVRDLSPPWLLFIADNGIGKRVPLNAFRQGNF 760 >gi|213616174|ref|ZP_03372000.1| DNA topoisomerase IV subunit A [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 401 Score = 367 bits (941), Expect = 5e-99, Method: Compositional matrix adjust. Identities = 178/400 (44%), Positives = 276/400 (69%), Gaps = 12/400 (3%) Query: 23 RFALEE----RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78 R AL E YL Y++ I +RA+P + DG KPV RRI++AMSE+GL+ A FKKSAR Sbjct: 7 RLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKFKKSART 66 Query: 79 VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMT 137 VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S AA RYTE+R++ Sbjct: 67 VGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLS 126 Query: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197 + AEL+L + + D+ ++ EP + P++ PN+L NGT+GIAVGMAT IP HN++ Sbjct: 127 KYAELLLSELGQGTADWVPNFDGTMQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLR 186 Query: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257 E+ +AA+ LI+ P+ ++++LL+ + GPD+PT I+ R I + Y GRG R+RA W Sbjct: 187 EVAKAAITLIEQPKTTLDQLLDIVQGPDYPTEAEIIIPRAEIRKIYENGRGSVRMRAVWT 246 Query: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFP 315 E+ +V+T +P+QV ++++E+IA + K++P+++D+RDES + R+V+ P Sbjct: 247 KED-----GAVVITALPHQVSGAKVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVP 301 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 ++ +D + +M +F +D+E + +N+N++ + P V L IL EWLA RR+ + RR Sbjct: 302 RSNRVDMEQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILTEWLAFRRDTVRRR 361 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKP 415 ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP Sbjct: 362 LNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKP 401 >gi|256965076|ref|ZP_05569247.1| DNA topoisomerase IV subunit A [Enterococcus faecalis HIP11704] gi|256955572|gb|EEU72204.1| DNA topoisomerase IV subunit A [Enterococcus faecalis HIP11704] Length = 820 Score = 367 bits (941), Expect = 5e-99, Method: Compositional matrix adjust. Identities = 210/618 (33%), Positives = 366/618 (59%), Gaps = 19/618 (3%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 + V+ ++L + +R+ Y+ I+ERA+PD+RDG KPV RRI+ +M++ G F F+K Sbjct: 5 QEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFSMNKDGNTFDKGFRK 64 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 SA+ VG ++G HPHGD S+Y+++VRL+Q + R LI GN G++DGD AA RYTEA Sbjct: 65 SAKSVGNIMGNYHPHGDISIYEAMVRLSQDWKLREVLIEMHGNNGSMDGDPPAAMRYTEA 124 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 R++Q++ +L+ ++++ VDF +++ + EP V P+K+PNLL NG++GI+ G AT IP+H Sbjct: 125 RLSQLSGELLKDIEKNTVDFVWNFDDTEKEPTVLPAKYPNLLVNGSTGISAGYATEIPTH 184 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 N+ EI + + LID+P S+EKL+EYI GPDFPTGGI+ + + I ++Y GRG +RA Sbjct: 185 NLAEIIDGTVYLIDHPNASLEKLMEYIPGPDFPTGGIL-QGKAEIKKAYETGRGKVILRA 243 Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314 + +E + G IV++EIPY+V K+ L++K+ E+ + K++ + ++RDES ++ Sbjct: 244 KTKIEPLKGGKQQIVISEIPYEVNKATLVKKMDEIRLNKKVDGIAEVRDESDRTGLQIVV 303 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 + ++ + ++ +F ++++ + NM + PQ + L IL+ ++ HR+ V+ Sbjct: 304 ELKKDVNAEGILNYLFKNTELQINYNFNMVAID-NMTPQQVGLKRILESYITHRKSVIIN 362 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDK--PKPVMVSRFSLTENQVDAI 431 R F + +R I+ GL+ A +D++IA IR ++DK K +VS ++ TE Q +AI Sbjct: 363 RCQFELDKARKREHIVAGLIKALSILDKVIATIRGSKDKKDAKKNLVSDYAFTEEQAEAI 422 Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491 + L+L L + ++ E L + ++ ++LN+ K+ ++ + E+REVK+ + Sbjct: 423 VTLQLYRLTNTDITDLQEEAKTLEQQIAELLNILNNEKELFSVMKKELREVKKQY----- 477 Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSVDL-SALHFKEG 548 G R T E + ++ +E + V +++ G+I+ S++S++ + KEG Sbjct: 478 -GNPRLTQIEEEIQEIKIETAVLVAQEDVVVTVTHEGYIKRSSIRSYTASKPEEIGMKEG 536 Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAI-QLLIDLNHNQDIVTA 605 D L A +T D +LL++ G P L L + GE I Q +++L ++ I+ Sbjct: 537 DFLLYAGEVNTLDHLLLVTNKGNMIYRPVHELPDLRWKEIGEHISQTILNLAIDESIIAV 596 Query: 606 FVYD--STCKLLVVSSKG 621 + Y S K V +K Sbjct: 597 YPYKELSPTKTFVFITKA 614 >gi|312869137|ref|ZP_07729311.1| DNA topoisomerase IV, A subunit [Lactobacillus oris PB013-T2-3] gi|311095383|gb|EFQ53653.1| DNA topoisomerase IV, A subunit [Lactobacillus oris PB013-T2-3] Length = 825 Score = 367 bits (941), Expect = 5e-99, Method: Compositional matrix adjust. Identities = 234/724 (32%), Positives = 398/724 (54%), Gaps = 35/724 (4%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 ++ +SL + ER+ Y+ S I+ERA+PD+RDG KPV RRI++AM++ G + F+KSA Sbjct: 6 IETMSLERLMGERFGRYSKSIIQERALPDIRDGLKPVQRRILYAMNKDGNTYDKGFRKSA 65 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 + VG V+G HPHGD S+Y++LVRL+Q + R PL+ GN G++DGD AAA RYTEAR+ Sbjct: 66 KSVGNVMGNFHPHGDSSIYEALVRLSQDWKLREPLVEMHGNNGSMDGDPAAAMRYTEARL 125 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 +++A L+LQ +D+D V+ +++ + EP V P++ PNLL NG +GI+ G AT IP+HN+ Sbjct: 126 SKIAGLMLQDIDKDTVEMTLNFDDTEKEPTVLPARIPNLLVNGATGISAGYATEIPTHNL 185 Query: 197 QEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARW 256 E+ +A + LI +P+ S+EKL+E+I GPDFPTGG IV+ + I ++Y+ GRG VRA+ Sbjct: 186 GEVLDALIYLIKHPDASLEKLMEFIPGPDFPTGG-IVQGADGIKKAYQTGRGRIVVRAKT 244 Query: 257 CVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPK 316 +E + G I VTEIPY+V K++L+++I +L +AK++ + + RDE+ + Sbjct: 245 EIETLRGGRQQINVTEIPYEVNKAQLVKRINDLRLAKKVEGIVEARDETDRSGLRIAIEL 304 Query: 317 NRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRS 376 R+ + + ++ + +D++ + NM + R P + L IL +LA ++EV+ RR+ Sbjct: 305 KRNANANGILNYLLKNTDLQINYNFNMVAIDDQR-PMRVGLKHILTSYLAFQKEVVRRRT 363 Query: 377 SFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAILN 433 S+ + RR+ I++GL+ A +D++I IR N K ++ +++ T+ Q +AI+ Sbjct: 364 SYNLDKAQRRLHIVEGLIKALSILDQVIKTIRASKNRKDAKQNLIDQYAFTDVQAEAIVT 423 Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493 L+L L + +++ E +L ++ +L+ ++ + E++ VK+ F Sbjct: 424 LQLYRLTNTDVTELEDEQQHLTDLIDEYQLILSDDEELSKVVRREMQAVKKEFGNP---- 479 Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW-----IRSLKSHSVDLSALHFKEG 548 RR +V + + T + + E + V++S+ G+ IRS K+ S+D L +E Sbjct: 480 RRTQIENQVEKLEIDT--KVTVANEDVVVLVSHAGYIKRSSIRSFKASSLDEDGL--RED 535 Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQDIVTAF 606 D + +T + + + G P L R GE I I L +++I+ A Sbjct: 536 DYPLLITQTNTLAHLFMFTNRGHVIYRPVHELADVRWKDTGEHISQTIGLAEDEEIIKAM 595 Query: 607 VYDS---TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAV 663 V+D + +S G + +R K+ ++ + K K V+ D+ Sbjct: 596 VFDKLDLPGSFIFGTSDGQVKQSAYKDYQPGSRY-KSHASMAVKLKSKDATVVSVDYYEP 654 Query: 664 VGENRKLLI---------FSIDQIPEMS-RGKGVRLQSYK-DGGISDVICFKICEGLTWI 712 ENR LL F + +P R GVR + K D + D++ K + + I Sbjct: 655 TDENRSLLAISREGYAVRFDVADVPVTGLRTAGVRAINLKDDDALVDLVLVKDGQRVASI 714 Query: 713 DSAG 716 G Sbjct: 715 TQRG 718 >gi|306829665|ref|ZP_07462855.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus mitis ATCC 6249] gi|304428751|gb|EFM31841.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus mitis ATCC 6249] Length = 826 Score = 367 bits (941), Expect = 5e-99, Method: Compositional matrix adjust. Identities = 226/706 (32%), Positives = 394/706 (55%), Gaps = 27/706 (3%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 N++ +SL + ER+ Y+ I++RA+PD+RDG KPV RRI+++M++ G F +++KS Sbjct: 3 NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDGNTFDKSYRKS 62 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 A+ VG ++G HPHGD S+YD++VR++Q + R L+ GN G++DGD AA RYTEAR Sbjct: 63 AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 ++++A +LQ +++ V F +++ + EP V P+ FPNLL NG++GI+ G AT IP HN Sbjct: 123 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 182 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 + E+ +A + +ID+P ++KL+E++ GPDFPTGGII + R+ I ++Y G+G VR++ Sbjct: 183 LAEVIDATVYMIDHPTAKVDKLMEFLPGPDFPTGGII-QGRDEIKKAYETGKGRVVVRSK 241 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315 +E++ G IV+TEIPY++ K+ L++KI ++ + ++ + ++RDES D + Sbjct: 242 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 301 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 + + +L++ +F +D++ + NM + P+ + + IL ++AHRREV+ R Sbjct: 302 LKKDANTELVLNYLFKYTDLQINYNFNMVAID-NFTPRQVGIVPILSSYIAHRREVILAR 360 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432 S F + ++R+ I++GL+ +DE+IA+IR N+ K + + TE Q +AI+ Sbjct: 361 SRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYEFTEEQAEAIV 420 Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492 L+L L + ++ E L + + +++ + +N + E+REVK+ F+ + L Sbjct: 421 TLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFA-TPRL 479 Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FKEGD 549 T V D A+L I +E V ++ G+I+ S S L ++ D Sbjct: 480 SALEDT-ANVIEIDTASL----IAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKRDDD 534 Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIVTAF 606 L A TT +L+ +T G P L R GE + Q + N++I+ A Sbjct: 535 RLIFVQSAKTTQHLLMFTTLGNVIYRPIHELADIRWKDIGEHLSQTITSFETNEEILYAE 594 Query: 607 VYDS---TCKLLVVSSKGNAFIVEESEIIA-NTRKGKT--FLKVSSE-EKMKLVVKVTGD 659 V D + G VE E T K K+ + K+ E +++ V + D Sbjct: 595 VVDQFEDAITYFAATRLGQIKRVERKEFSPWRTYKSKSVKYAKLKDETDQIVAVAPIKLD 654 Query: 660 HVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDGGI--SDVIC 702 V ++ +N L F+I+++P + ++ GV+ + K+ + S IC Sbjct: 655 DVLLISQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSSFIC 700 >gi|38232651|ref|NP_938418.1| DNA gyrase subunit A [Corynebacterium diphtheriae NCTC 13129] gi|38198909|emb|CAE48520.1| DNA gyrase subunit A [Corynebacterium diphtheriae] Length = 856 Score = 367 bits (941), Expect = 5e-99, Method: Compositional matrix adjust. Identities = 248/767 (32%), Positives = 411/767 (53%), Gaps = 43/767 (5%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 + V + L +E Y+ YA+S I RA+P++RDG KPVHRRI++AM + G ++ K Sbjct: 12 DRVHPIDLNEEMETSYIDYAMSVIVGRALPEVRDGLKPVHRRILYAMYDSGYRPDRSYVK 71 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 SAR V + +G+ HPHGD ++YD+LVRLAQ + RYP++ GQGNFG+ D AA RYTE Sbjct: 72 SARPVSDTMGQFHPHGDSAIYDTLVRLAQDWNMRYPMVDGQGNFGSRGNDGPAAMRYTEC 131 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 R+T +A +++ + E+ VDF Y+ + EP V PS+ PNLL NG++GIAVGMAT+IP H Sbjct: 132 RLTPLAMEMVRDIRENTVDFSPNYDGKTQEPDVLPSRVPNLLMNGSNGIAVGMATNIPPH 191 Query: 195 NVQEICEAALALIDNPEI----SIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250 N++E+ +A L+DNPE ++E ++Y+ GPDFPT G IV S + I ++Y GRG Sbjct: 192 NLRELGDAIFWLLDNPEADEASALEACMKYVKGPDFPTAGQIVGS-QGINDAYTTGRGSI 250 Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV- 309 R+R +EE G IV+TE+PYQV +I IAE + ++ + I DES++ V Sbjct: 251 RMRGVTSIEEEG-NRQIIVITELPYQVNPDNMISNIAEQVRDGKLAGISKIEDESSDRVG 309 Query: 310 -RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368 RIV+ K R P +++ +++ S ++T F NM + G VP+ + LD +L+ ++ H+ Sbjct: 310 MRIVVTLK-RDAVPRVVLNNLYKHSQLQTNFGANMLSIVDG-VPRTLRLDQMLRHYVTHQ 367 Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTE 425 EV+ RR+ +R+ ++R IL+GL+ A +DE+IA+IR D + ++ ++ E Sbjct: 368 IEVIVRRTQYRLDEAEKRAHILRGLVKALDMLDEVIALIRRSPTVDIARTGLMELLTVDE 427 Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485 Q DAIL ++LR L LE +I EL + E +L ++Q + E+ E+ + Sbjct: 428 IQADAILAMQLRRLAALERQKIVDELAEIELEIADYKDILARPERQRAIVRDELAEIVDK 487 Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD------ 539 + RRT ++ A ++ +I +E + V I++ G+ + K + Sbjct: 488 YGDD-----RRT---QIIAATGDVTEEDLIARENVVVTITSTGYAKRTKVDAYKSQRRGG 539 Query: 540 --LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLID 595 + K+ D ++ + T D IL + G+ Y L A L S G+ + L++ Sbjct: 540 KGVRGAELKQDDVVRHFFVSSTHDWILFFTNFGRVYRLKAYELPEASRTARGQHVANLLE 599 Query: 596 LNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM-K 651 + I Y+ L++ +++G S+ +N G + ++ +K+ Sbjct: 600 FQPEERIAQVIQIQSYEDAPYLVLATAQGRVKKSRLSDYESNRSGGLIAINLNEGDKLIG 659 Query: 652 LVVKVTGDHVAVVGENRKLLIFSI--DQIPEMSRGK-GVRLQSYKDGGISDVICFKIC-- 706 + D + +V E + + F+ DQ+ M R GV+ +K G ++ + Sbjct: 660 AALCDNDDDLLLVSEEGQSIRFNANDDQLRPMGRATAGVKGMRFK--GDDQLLAMTVVKP 717 Query: 707 EGLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753 + + ++G R+ D G RGG G L K P+ GK +++ Sbjct: 718 DAFLLVATSGGYGKRTSLDEYSPQG-RGGQGVLTFKYTPKRGKLIAA 763 >gi|183602674|ref|ZP_02964038.1| DNA gyrase subunit A [Bifidobacterium animalis subsp. lactis HN019] gi|219682505|ref|YP_002468888.1| DNA gyrase subunit A [Bifidobacterium animalis subsp. lactis AD011] gi|241190072|ref|YP_002967466.1| DNA gyrase subunit A [Bifidobacterium animalis subsp. lactis Bl-04] gi|241195478|ref|YP_002969033.1| DNA gyrase subunit A [Bifidobacterium animalis subsp. lactis DSM 10140] gi|183218092|gb|EDT88739.1| DNA gyrase subunit A [Bifidobacterium animalis subsp. lactis HN019] gi|219620155|gb|ACL28312.1| DNA gyrase, A subunit [Bifidobacterium animalis subsp. lactis AD011] gi|240248464|gb|ACS45404.1| DNA gyrase subunit A [Bifidobacterium animalis subsp. lactis Bl-04] gi|240250032|gb|ACS46971.1| DNA gyrase subunit A [Bifidobacterium animalis subsp. lactis DSM 10140] gi|289177775|gb|ADC85021.1| DNA gyrase subunit A [Bifidobacterium animalis subsp. lactis BB-12] gi|295793059|gb|ADG32594.1| DNA gyrase subunit A [Bifidobacterium animalis subsp. lactis V9] Length = 920 Score = 367 bits (941), Expect = 5e-99, Method: Compositional matrix adjust. Identities = 220/620 (35%), Positives = 350/620 (56%), Gaps = 43/620 (6%) Query: 12 LVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAA 71 +V + V+ + L+ + + YL+YALS I ERA+PD+RDG KPVHRR+++AM + G Sbjct: 45 MVGQRVQPIDLQDEMRQSYLSYALSVIVERALPDVRDGMKPVHRRVVYAMYDGGYRPDRG 104 Query: 72 FKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRY 131 + K +R+VG+V+GK HPHGD ++YD+LVR+AQ + RY L+ GQGNFG+ D AAA RY Sbjct: 105 YNKCSRVVGDVMGKYHPHGDSAIYDTLVRMAQSWSMRYLLVDGQGNFGSPGDDPAAAMRY 164 Query: 132 TEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSI 191 TE RM +A +++ +D+D VDF Y+ + EP V P++FPNLL NG+SGIAVGMAT+I Sbjct: 165 TECRMAPLAMEMVRDIDKDTVDFVPNYDGKTQEPTVLPARFPNLLVNGSSGIAVGMATNI 224 Query: 192 PSHNVQEICEAALALIDNPEISIEKLLEYII----GPDFPTGGIIVESRESIVESYRLGR 247 P HN++E+ + +D+PE S E+LL+ +I GPDFPTG I+ + I ++YR GR Sbjct: 225 PPHNMREVADGVHWALDHPEASREELLDALIERIKGPDFPTGATIL-GHKGIEQAYRTGR 283 Query: 248 GGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAE 307 G +RA EE+ +G C+VVTE+PYQV RL+ I E + +I + D+RDE++ Sbjct: 284 GLITMRAVVNTEEI-KGRMCLVVTELPYQVNPDRLVASIREAVRDGKITGIADMRDETSG 342 Query: 308 DV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWL 365 R+VL K ++ P +++ +++ S ++ F NM L G VP+ + LD ++ W+ Sbjct: 343 RTGQRLVLVLKRDAV-PKVVLNNLYKHSQLQQTFGANMLALVDG-VPRTLSLDAFIRHWV 400 Query: 366 AHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLT- 424 +H+ +V+ RR+++ + + R IL+G L A IDE+I +IR+ + V ++R L Sbjct: 401 SHQLDVIARRTAYLKREAEERDHILQGYLKALDMIDEVIHLIRSS---QTVEIARTGLMD 457 Query: 425 -----ENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479 + Q DAIL ++LR L LE +I E D L+ +L ++Q + E+ Sbjct: 458 LLGVDDVQADAILAMQLRRLAALERQKILDEHDELMRRIADYADILAKPERQRKIVGDEL 517 Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSV- 538 E+ + RRT S + +I +E + V +++ G+I+ K+ Sbjct: 518 DEIVARYGDD-----RRTKILPFSGEMNV---EDLIAEENVVVTVTHAGFIKRTKADEYR 569 Query: 539 -------DLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGH 586 + ++ D + T + +L + G KAY LP G+ S Sbjct: 570 AQHRGGKGIKGAKLRDDDVVDHFFLTSTHNWLLFFTNKGRVYRCKAYELPEGSRDS---K 626 Query: 587 GEAIQLLIDLNHNQDIVTAF 606 G+ + L+ ++ I T Sbjct: 627 GQHVANLLQFTPDESIQTVL 646 >gi|32448550|gb|AAO16802.1| ParC [Streptococcus pneumoniae] Length = 823 Score = 367 bits (941), Expect = 5e-99, Method: Compositional matrix adjust. Identities = 223/709 (31%), Positives = 398/709 (56%), Gaps = 33/709 (4%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 N++ +SL + ER+ Y+ I++RA+PD+RDG KPV RRI+++M++ G F +++KS Sbjct: 3 NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDGNTFDKSYRKS 62 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 A+ VG ++G HPHGD S+YD++VR++Q + R L+ GN G++DGD AA RYTEAR Sbjct: 63 AKSVGNIMGNFHPHGDYSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 ++++A +LQ +++ V F +++ + EP V P+ FPNLL NG++GI+ G AT IP HN Sbjct: 123 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 182 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 + E+ +AA+ +ID+P ++KL+E++ GPDFPTG II + R+ I ++Y G+G VR++ Sbjct: 183 LAEVIDAAVYMIDHPTAKVDKLMEFLPGPDFPTGAII-QGRDEIKKAYETGKGRVVVRSK 241 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315 +E++ G IVVTEIPY++ K+ L++KI ++ + ++ + ++RDES D + Sbjct: 242 TEIEKLKGGKEQIVVTEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 301 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 + + +L++ +F +D++ + NM + P+ + + IL ++AHRREV+ R Sbjct: 302 LKKDANTELVLNYLFKYTDLQINYNFNMVAID-NFTPRQVGIVPILSSYIAHRREVILAR 360 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432 S F + ++R+ I++GL+ +DE+IA+IR N+ K + + TE Q +AI+ Sbjct: 361 SRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIV 420 Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492 L+L L + ++ E L + + +++ + +N + E+REVK+ F+ Sbjct: 421 TLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP--- 477 Query: 493 GRRRTTFCEVSRA---DKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FK 546 R ++ + ++A D A+L I +E V ++ G+I+ S S L + Sbjct: 478 --RLSSLEDTAKAIEIDTASL----IAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKR 531 Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIV 603 + D L A TT +L+ ++ G P L R GE + Q + + N++I+ Sbjct: 532 DDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEIL 591 Query: 604 TAFV---YDSTCKLLVVSSKGNAFIVEESEIIA-NTRKGKT--FLKVSSE-EKMKLVVKV 656 V +D + G VE E T + K+ + K+ + +++ V + Sbjct: 592 YVEVLDQFDDATTYFAATRLGQIKRVERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPI 651 Query: 657 TGDHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDGGI--SDVIC 702 D V +V +N L F+I+++P + ++ GV+ + K+ + S IC Sbjct: 652 KLDDVVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSAFIC 700 >gi|281424293|ref|ZP_06255206.1| DNA gyrase, A subunit [Prevotella oris F0302] gi|281401562|gb|EFB32393.1| DNA gyrase, A subunit [Prevotella oris F0302] Length = 867 Score = 367 bits (941), Expect = 5e-99, Method: Compositional matrix adjust. Identities = 212/611 (34%), Positives = 343/611 (56%), Gaps = 26/611 (4%) Query: 6 ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65 + + T+ + + +++ ++ Y+ Y++S I RA+PD+RDGFKPVHRRI++ M +G Sbjct: 1 MDENQTIDNDRILKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMLGIG 60 Query: 66 LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125 +KK AR+VGEV+GK HPHGD SVY +LVR+ Q + RY L+ GQGNFG+IDGDS Sbjct: 61 NTSDKPYKKCARVVGEVLGKYHPHGDSSVYGALVRMGQDWNMRYTLVDGQGNFGSIDGDS 120 Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185 AA RYTE R++++ E ++ +++D VD + +++ EP V P+K PNLL NG +GIAV Sbjct: 121 PAAMRYTECRLSKMGEHVMDDLEKDTVDMANNFDDTLIEPSVMPTKIPNLLVNGGNGIAV 180 Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245 GMAT+IP+HN++E+ + A IDNP+I ++ L++YI PDFPTG I + + ++Y Sbjct: 181 GMATNIPTHNLREVIDGCCAYIDNPDIELDGLMQYIKAPDFPTGAYIY-GIQGVRQAYET 239 Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES 305 GRG +RA+ +E IVVTEIPY V K LIE IA+L+ RI + + DES Sbjct: 240 GRGRIVMRAKAEIES-DESHDKIVVTEIPYGVNKQLLIENIADLVKEGRIDGISNANDES 298 Query: 306 A-EDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEW 364 + +RIV+ K R + ++++ +F ++ +++ F +N L GR P+++ L +K + Sbjct: 299 GRQGMRIVIDVK-RDANANVILNKLFKMTALQSSFSVNCIALVKGR-PRLLSLKECVKYF 356 Query: 365 LAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRF 421 + HR +V RR+ + ++ R IL+GL+IA NIDE++ IIR P + RF Sbjct: 357 VEHRHDVTIRRTKYDLKKAQERAHILEGLIIACDNIDEVVHIIRASKTPADAQRNLEERF 416 Query: 422 SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIRE 481 +L E Q AI+++RL L L Q+ +E + L + +L+ + + E+ E Sbjct: 417 NLDELQSKAIVDMRLSQLTGLRMDQLHAEYEELERQIAYFQQILDDPELCKKVMKDELNE 476 Query: 482 VKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL-------- 533 VK+ + RRT E+ + + + +P+ + +S+ G+I+ Sbjct: 477 VKDKYGDE-----RRT---EIKYSSEEFNPEDFYPNDPVVITVSHMGYIKRTPLSEFHEQ 528 Query: 534 KSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSG--RGHGEAIQ 591 V +E D + A +L + G+ Y L + G G AIQ Sbjct: 529 ARGGVGAKGARHREQDFTEFIYPATMHQTMLFFTKKGRCYWLKCFEIPEGDRNSKGRAIQ 588 Query: 592 LLIDLNHNQDI 602 ++++ + I Sbjct: 589 NMLNIESDDAI 599 >gi|9230561|gb|AAF85901.1| topoisomerase IV subunit A [Streptococcus pneumoniae] Length = 823 Score = 367 bits (941), Expect = 5e-99, Method: Compositional matrix adjust. Identities = 223/709 (31%), Positives = 397/709 (55%), Gaps = 33/709 (4%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 N++ +SL + ER+ Y+ I++RA+PD+RDG KPV RRI+++M++ F +++KS Sbjct: 3 NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 62 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 A+ VG ++G HPHGD S+YD++VR++Q + R L+ GN G++DGD AA RYTEAR Sbjct: 63 AKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 ++++A +LQ +++ V F +++ + EP V P+ FPNLL NG++GI+ G AT IP HN Sbjct: 123 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 182 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 + E+ +AA+ +ID+P I+KL+E++ GPDFPTG II + R+ I ++Y G+G VR++ Sbjct: 183 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAII-QGRDEIKKAYETGKGRVVVRSK 241 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315 +E++ G IV+TEIPY++ K+ L++KI ++ + ++ + ++RDES D + Sbjct: 242 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 301 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 + + +L++ +F +D++ + NM + P+ + + IL ++AHRREV+ R Sbjct: 302 LKKDANTELVLNYLFKYTDLQINYNFNMVAID-NFTPRQVGIVPILSSYIAHRREVILAR 360 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432 S F + ++R+ I++GL+ +DE+IA+IR N+ PK + + TE Q +AI+ Sbjct: 361 SPFDKEKAEKRLRIVEGLIRVISILDEVIALIRASENKADPKENLKVSYDFTEEQAEAIV 420 Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492 L+L L + ++ E L + + +++ + +N + E+REVK+ F+ Sbjct: 421 TLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKNFATP--- 477 Query: 493 GRRRTTFCEVSRA---DKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FK 546 R ++ + ++A D A+L I +E V ++ G+I+ S S L + Sbjct: 478 --RLSSLEDTAKAIEIDTASL----IAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKR 531 Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIV 603 + D L A TT +L+ ++ G P L R GE + Q + + N+ I+ Sbjct: 532 DDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEAIL 591 Query: 604 TAFV---YDSTCKLLVVSSKGNAFIVEESEIIA-NTRKGKT--FLKVSSE-EKMKLVVKV 656 V +D + G VE E T + K+ + K+ + +++ V + Sbjct: 592 YVEVLDQFDDATTYFAATRLGQIKRVERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPI 651 Query: 657 TGDHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDGGI--SDVIC 702 D V +V +N L F+I+++P + ++ GV+ + K+ + S IC Sbjct: 652 KLDDVVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSGFIC 700 >gi|291297545|ref|YP_003508823.1| DNA gyrase subunit A [Stackebrandtia nassauensis DSM 44728] gi|290566765|gb|ADD39730.1| DNA gyrase, A subunit [Stackebrandtia nassauensis DSM 44728] Length = 831 Score = 367 bits (941), Expect = 6e-99, Method: Compositional matrix adjust. Identities = 231/634 (36%), Positives = 355/634 (55%), Gaps = 47/634 (7%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 ++ V + ++ YL YA+S I RA+PD+RDG KPVHR+I++ M + G + K + Sbjct: 19 IEPVGVEVQMQRSYLDYAMSVIVGRALPDVRDGLKPVHRKILYGMYDGGYRPDRGYVKCS 78 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARM 136 R+VG+V+G+ HPHGD ++YDSLVR+AQP+ RYPLI GQGNFG+ D AAA RYTE+R+ Sbjct: 79 RVVGDVMGQYHPHGDSAIYDSLVRMAQPWSMRYPLIDGQGNFGSPGNDPAAAMRYTESRL 138 Query: 137 TQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNV 196 +A +L+ +DED+VDF Y+ + +EP V P++ PNLL NG+ GIAVGMAT IP HN+ Sbjct: 139 DPLAMEMLRDIDEDSVDFGPNYDGKTTEPEVLPARIPNLLVNGSEGIAVGMATKIPPHNL 198 Query: 197 QEICEAALALIDNPEISIEKLLEYII----GPDFPTGGIIVESRESIVESYRLGRGGFRV 252 +E+ A +DN E E+ LE +I GPDFPT +IV R I ++YR GRG R+ Sbjct: 199 REVAAAVNWCLDNTEADEEETLEALIKLVQGPDFPTSALIV-GRAGIEDAYRTGRGSIRM 257 Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA--EDVR 310 RA VEE +G C+VVTE+PYQV L E+IAEL+ ++ + DIR+ES+ +R Sbjct: 258 RAVIEVEEDRKGRPCLVVTEMPYQVNPDNLAERIAELVKDGKLNGIADIREESSGRTGMR 317 Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370 +VL K R +++ +++ + ++ F NM L G VP+ + L ++ ++AH+ E Sbjct: 318 LVLVLK-RDAVAKVVLNNLYKHTQLQETFGANMLALVDG-VPRTLNLAQFVRHYVAHQIE 375 Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTENQ 427 V+ RR+ FR++ + R IL+GL A +D +IA+IR+ ++ K +++ + E Q Sbjct: 376 VIVRRTKFRLRKAEERAHILRGLQKALDQLDAVIALIRSSPSAEESKTGLMNLLEVDEIQ 435 Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487 AIL+++LR L LE +I EL + A+ ++ +L ++Q I E+ I + Sbjct: 436 ATAILDMQLRRLAALERQKILDELAEIEAKIADLEDILAKPERQRQIIKDEL---GAIVA 492 Query: 488 KSTDLGRRRTTFC----EVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLKS 535 K D RRT EV+ D +I +E + V I+ G+ RS + Sbjct: 493 KWGD--ERRTKIVPFEGEVNMED-------LIAREDVVVTITRGGYAKRTKVDLYRSQRR 543 Query: 536 HSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAI 590 +S K+ D + T D +L + G KAY LP S G+ + Sbjct: 544 GGKGVSGATLKQDDLVSHFFVCSTHDWMLFFTNKGRVYRAKAYELPEA---SRTARGQHV 600 Query: 591 QLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKG 621 L+ ++ I YD L++ + +G Sbjct: 601 ANLLAFQPDEQIAQVMQISGYDVAPYLVLATRRG 634 >gi|121610061|ref|YP_997868.1| DNA gyrase subunit A [Verminephrobacter eiseniae EF01-2] gi|121554701|gb|ABM58850.1| DNA gyrase subunit A [Verminephrobacter eiseniae EF01-2] Length = 914 Score = 367 bits (941), Expect = 6e-99, Method: Compositional matrix adjust. Identities = 222/620 (35%), Positives = 342/620 (55%), Gaps = 67/620 (10%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 +SL + YL YA+S I RA+PD RDG KPVHRR++ +M E+ D+ ++KSAR V Sbjct: 40 ISLEEEMRRSYLDYAMSVIVGRALPDARDGLKPVHRRVLFSMHELHNDWNRPYRKSARAV 99 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+V+GK HPHGD ++YD++VR+AQ F R+ LI GQGNFG++DGD+AAA RYTE R+ ++ Sbjct: 100 GDVMGKYHPHGDTAIYDTIVRMAQSFSLRHMLIDGQGNFGSVDGDNAAAMRYTEIRLAKI 159 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A +L +D++ VDF Y+ + EP+V PSK PNLL NG++GIAVGMAT+IP HN+ E+ Sbjct: 160 AHEMLADIDKETVDFGPNYDGNEKEPLVLPSKLPNLLVNGSAGIAVGMATNIPPHNLNEV 219 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 +A L L+ +P+ SI++L+E I PDFPT GII + + YR GRG +RA+ E Sbjct: 220 VDACLHLLHHPDASIDELMEIIPAPDFPTAGIIY-GINGVKDGYRTGRGKVVMRAKCHFE 278 Query: 260 EVGRGS-WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNR 318 ++ RG I+V E+PYQV K L E++AEL+ K++ + I+DES + ++ R Sbjct: 279 DIDRGQRQAIIVDELPYQVNKKTLQERMAELVHEKKLDGISHIQDESDKSGMRLVIELKR 338 Query: 319 SLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSF 378 P++++ +++ + ++ F +NM L G+ P++ L ++ +L HRREV+ RR+ F Sbjct: 339 GEVPEVVLNNLYKQTQLQDTFGMNMVALIDGQ-PRLCNLKDLVSVFLQHRREVVTRRTVF 397 Query: 379 RMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVS------------------- 419 ++ R +L+GL +A NID+ IAIIRN P PV + Sbjct: 398 ELRKARERGHVLEGLAVALANIDDFIAIIRNAPTP-PVAKAGLMAQSWDSQLVREMLTRT 456 Query: 420 ---------------------------RFSLTENQVDAILNLRLRSLRKLEEYQIKSELD 452 R+ L++ Q IL +RL+ L LE+ +I +E Sbjct: 457 RADGAQVNADDYRPEGLDQELGMGRDGRYRLSDTQAQEILQMRLQRLTGLEQDKIVAEYK 516 Query: 453 NLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQ 512 + + + + +L ++ I E+ +++ F + RR + E S D T + Sbjct: 517 DAMDVVDDLLDILAKPERVSIIIGQELAAIRQEFGQHKLSARR--SIIEHSAQDLCT--E 572 Query: 513 AMIEKEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRIL 564 +I + V +S+ G+I R+ K A KE D + A+T D IL Sbjct: 573 DLITPTDMVVTLSHTGYIKSQPLGEYRAQKRGGRGKQATATKEDDWIDQLFIANTHDYIL 632 Query: 565 LLSTDGKAYTL-----PAGN 579 S G+ Y L PAG+ Sbjct: 633 CFSNRGRLYWLKVWEVPAGS 652 >gi|73916822|gb|AAZ93279.1| topoisomerase IV subunit A [Streptococcus pneumoniae] gi|73916906|gb|AAZ93321.1| topoisomerase IV subunit A [Streptococcus pneumoniae] gi|73916914|gb|AAZ93325.1| topoisomerase IV subunit A [Streptococcus pneumoniae] Length = 821 Score = 367 bits (941), Expect = 6e-99, Method: Compositional matrix adjust. Identities = 223/709 (31%), Positives = 398/709 (56%), Gaps = 33/709 (4%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 N++ +SL + ER+ Y+ I++RA+PD+RDG KPV RRI+++M++ F +++KS Sbjct: 1 NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 60 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 A+ VG ++G HPHGD S+YD++VR++Q + R L+ GN G++DGD AA RYTEAR Sbjct: 61 AKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 120 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 ++++A +LQ +++ V F +++ + EP V P+ FPNLL NG++GI+ G AT IP HN Sbjct: 121 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 180 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 + E+ +AA+ +ID+P I+KL+E++ GPDFPTG II + R+ I ++Y G+G VR++ Sbjct: 181 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAII-QGRDEIKKAYETGKGRVVVRSK 239 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315 +E++ G IV+TEIPY++ K+ L++KI ++ + ++ + ++RDES D + Sbjct: 240 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 299 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 + + +L++ +F +D++ + NM + P+ + + IL ++AHRREV+ R Sbjct: 300 LKKDANTELVLNYLFKYTDLQINYNFNMVAID-NFTPRQVGIVPILSSYIAHRREVILAR 358 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432 S F + ++R+ I++GL+ +DE+IA+IR N+ K + + TE Q +AI+ Sbjct: 359 SRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIV 418 Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492 L+L L + ++ E L + + +++ + +N + E+REVK+ F+ Sbjct: 419 TLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP--- 475 Query: 493 GRRRTTFCEVSRA---DKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FK 546 R ++ + ++A D A+L I +E V ++ G+I+ S S L + Sbjct: 476 --RLSSLEDTAKAIEIDTASL----IAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKR 529 Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIV 603 + D L A TT +L+ ++ G P L R GE + Q + + N++I+ Sbjct: 530 DDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEIL 589 Query: 604 TAFV---YDSTCKLLVVSSKGNAFIVEESEIIA-NTRKGKT--FLKVSSE-EKMKLVVKV 656 V +D V+ G VE E T + K+ + K+ + +++ V + Sbjct: 590 YVEVLDQFDDATTYFAVTRLGQIKRVERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPI 649 Query: 657 TGDHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDGGI--SDVIC 702 D V +V +N L F+I+++P + ++ GV+ + K+ + S IC Sbjct: 650 KLDDVVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSGFIC 698 >gi|1346236|sp|P48371|GYRA_NEIGO RecName: Full=DNA gyrase subunit A gi|529408|gb|AAA82128.1| DNA gyrase subunit A [Neisseria gonorrhoeae] Length = 916 Score = 367 bits (941), Expect = 6e-99, Method: Compositional matrix adjust. Identities = 225/628 (35%), Positives = 351/628 (55%), Gaps = 65/628 (10%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 VSL + + YL YA+S I RA+PD+RDG KPVHRR+++AM E+ ++ AA+KKSARIV Sbjct: 19 VSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIV 78 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+VIGK HPHGD +VYD++VR+AQ F RY LI GQGNFG++DG +AAA RYTE RM ++ Sbjct: 79 GDVIGKYHPHGDSAVYDTIVRMAQNFAMRYVLIDGQGNFGSVDGLAAAAMRYTEIRMAKI 138 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 + +L ++E+ V+F Y+ + EP+V P++FP LL NG+SGIAVGMAT+IP HN+ + Sbjct: 139 SHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGSSGIAVGMATNIPPHNLTDT 198 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 A L L+D P+ I++L++ I PDFPTG I + E Y+ GRG +R + +E Sbjct: 199 INACLRLLDEPKTEIDELIDIIQAPDFPTGATIY-GLGGVREGYKTGRGRVVMRGKTHIE 257 Query: 260 EVGRGS--WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317 +G+ IV+ EIPYQV K++L+EKI +L+ K + + ++RDES + V+ Sbjct: 258 PIGKNGERERIVIDEIPYQVNKAKLVEKIGDLVREKTLEGISELRDESDKSGMRVVIELK 317 Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377 R+ + ++++ ++ L+ ++ F +NM VL G+ P+++ L IL E+L HRREV+ RR+ Sbjct: 318 RNENAEVVLNQLYKLTPLQDSFGINMVVLVDGQ-PRLLNLKQILSEFLRHRREVVTRRTL 376 Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSR-------------- 420 FR++ I + +A NIDEII +I+ N + K +++R Sbjct: 377 FRLKKARHEGHIAERKAVALSNIDEIIKLIKESPNAAEAKEKLLARPWASSLVEEMLTRS 436 Query: 421 ----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEK 458 + L+E Q DAIL + LR+L L++ +I NL+ + Sbjct: 437 GLDLEMMRPEGLVANIGLKKQGYYLSEIQADAILRMSLRNLTGLDQKEIIESYKNLMGKI 496 Query: 459 EKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKE 518 +L+ ++ I E+ E+K T+ G R + D A + +I + Sbjct: 497 IDFVDILSKPERITQIIRDELEEIK------TNYGDERRSEINPFGGDIA--DEDLIPQR 548 Query: 519 PITVVISNRGWIRSLKSHSVDL--------SALHFKEGDSLKIALHAHTTDRILLLSTDG 570 + V +++ G+I++ + A K+ D ++ A+T D ++ + G Sbjct: 549 EMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDYLMCFTNLG 608 Query: 571 KA-----YTLPAGNLLS-GRGHGEAIQL 592 K Y LP G S GR IQL Sbjct: 609 KCHWIKVYKLPEGGRNSRGRPINNVIQL 636 >gi|73916842|gb|AAZ93289.1| topoisomerase IV subunit A [Streptococcus pneumoniae] Length = 821 Score = 367 bits (941), Expect = 6e-99, Method: Compositional matrix adjust. Identities = 223/709 (31%), Positives = 398/709 (56%), Gaps = 33/709 (4%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 N++ +SL + ER+ Y+ I++RA+PD+RDG KPV RRI+++M++ F +++KS Sbjct: 1 NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 60 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 A+ VG ++G HPHGD S+YD++VR++Q + R L+ GN G++DGD AA RYTEAR Sbjct: 61 AKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 120 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 ++++A +LQ +++ V F +++ + EP V P+ FPNLL NG++GI+ G AT IP HN Sbjct: 121 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 180 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 + E+ +AA+ +ID+P I+KL+E++ GPDFPTG II + R+ I ++Y G+G VR++ Sbjct: 181 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAII-QGRDEIKKAYETGKGRVVVRSK 239 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315 +E++ G IV+TEIPY++ K+ L++KI ++ + ++ + ++RDES D + Sbjct: 240 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 299 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 + + +L++ +F +D++ + NM + P+ + + IL ++AHRREV+ R Sbjct: 300 LKKDANTELVLNYLFKYTDLQINYNFNMVAID-NFTPRQVGIVPILSSYIAHRREVILAR 358 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432 S F + ++R+ I++GL+ +DE+IA+IR N+ K + + TE Q +AI+ Sbjct: 359 SRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIV 418 Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492 L+L L + ++ E L + + +++ + +N + E+REVK+ F+ Sbjct: 419 TLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP--- 475 Query: 493 GRRRTTFCEVSRA---DKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FK 546 R ++ + ++A D A+L I +E V ++ G+I+ S S L + Sbjct: 476 --RLSSLEDTAKAIEIDTASL----IAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKR 529 Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIV 603 + D L A TT +L+ ++ G P L R GE + Q + + N++I+ Sbjct: 530 DDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEIL 589 Query: 604 TAFV---YDSTCKLLVVSSKGNAFIVEESEIIA-NTRKGKT--FLKVSSE-EKMKLVVKV 656 V +D V+ G VE E T + K+ + K+ + +++ V + Sbjct: 590 YVEVLDQFDDATTYFAVTRLGQIKRVERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPI 649 Query: 657 TGDHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDGGI--SDVIC 702 D V +V +N L F+I+++P + ++ GV+ + K+ + S IC Sbjct: 650 KLDDVVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSGFIC 698 >gi|182683769|ref|YP_001835516.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae CGSP14] gi|182629103|gb|ACB90051.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae CGSP14] Length = 826 Score = 367 bits (941), Expect = 6e-99, Method: Compositional matrix adjust. Identities = 223/709 (31%), Positives = 398/709 (56%), Gaps = 33/709 (4%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 N++ +SL + ER+ Y+ I++RA+PD+RDG KPV RRI+++M++ F +++KS Sbjct: 6 NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 65 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 A+ VG ++G HPHGD S+YD++VR++Q + R L+ GN G++DGD AA RYTEAR Sbjct: 66 AKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 125 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 ++++A +LQ +++ V F +++ + EP V P+ FPNLL NG++GI+ G AT IP HN Sbjct: 126 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 185 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 + E+ +AA+ +ID+P I+KL+E++ GPDFPTG II + R+ I ++Y G+G VR++ Sbjct: 186 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAII-QGRDEIKKAYETGKGRVVVRSK 244 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315 +E++ G IV+TEIPY++ K+ L++KI ++ + ++ + ++RDES D + Sbjct: 245 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 304 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 + + +L++ +F +D++ + NM + P+ + + IL ++AHRREV+ R Sbjct: 305 LKKDANTELVLNYLFKYTDLQINYNFNMVAID-NFTPRQVGIVPILSSYIAHRREVILAR 363 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432 S F + ++R+ I++GL+ +DE+IA+IR N+ K + + TE Q +AI+ Sbjct: 364 SRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIV 423 Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492 L+L L + ++ E L + + +++ + +N + E+REVK+ F+ Sbjct: 424 TLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP--- 480 Query: 493 GRRRTTFCEVSRA---DKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FK 546 R ++ + ++A D A+L I +E V ++ G+I+ S S L + Sbjct: 481 --RLSSLEDTAKAIEIDTASL----IAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKR 534 Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIV 603 + D L A TT +L+ ++ G P L R GE + Q + + N++I+ Sbjct: 535 DDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEIL 594 Query: 604 TAFV---YDSTCKLLVVSSKGNAFIVEESEIIA-NTRKGKT--FLKVSSE-EKMKLVVKV 656 V +D V+ G VE E T + K+ + K+ + +++ V + Sbjct: 595 YVEVLDQFDDATTYFAVTRLGQIKRVERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPI 654 Query: 657 TGDHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDGGI--SDVIC 702 D V +V +N L F+I+++P + ++ GV+ + K+ + S IC Sbjct: 655 KLDDVVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSGFIC 703 >gi|310286526|ref|YP_003937784.1| gyrA1 DNA gyrase subunit A [Bifidobacterium bifidum S17] gi|309250462|gb|ADO52210.1| gyrA1 DNA gyrase subunit A [Bifidobacterium bifidum S17] Length = 910 Score = 366 bits (940), Expect = 6e-99, Method: Compositional matrix adjust. Identities = 228/639 (35%), Positives = 357/639 (55%), Gaps = 40/639 (6%) Query: 7 SNSNTLVEEN-VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65 +N ++++N V ++ + + YL YA+S I ERA+PD+RDG KPVHRRI++AM + G Sbjct: 30 ANEQLVLDDNRVAHTDIQKEMRQSYLDYAISVIVERALPDVRDGMKPVHRRIVYAMYDGG 89 Query: 66 LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125 + K AR V +V+G HPHGD ++YDSLVR+AQP+ RY L+ GQGNFG+ D Sbjct: 90 YRPDRGYSKCARPVADVMGNYHPHGDAAIYDSLVRMAQPWSMRYTLVDGQGNFGSAGDDP 149 Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185 AA RYTE RM +A +++ +D+D VDF Y+ EP V P++FPNLLANG+SGIAV Sbjct: 150 PAAMRYTECRMMPLAMEMVRDIDKDTVDFVPNYDGRTQEPTVLPARFPNLLANGSSGIAV 209 Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYII----GPDFPTGGIIVESRESIVE 241 GMAT+IP HN++E+ E +D+PE S E+LL +I GPDFPTG I+ + I + Sbjct: 210 GMATNIPPHNMRELAEGVHWTLDHPEASHEELLNALIGIIKGPDFPTGATIL-GHKGIEQ 268 Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301 +YR GRG +RA EE+ +G C+VVTE+PYQV RL I E + +I + D+ Sbjct: 269 AYRTGRGLITMRAVVNTEEI-KGRMCLVVTELPYQVNPDRLAASIREGVRDGKIQGIADM 327 Query: 302 RDESAEDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359 RDE++ R+VL K R P +++ +++ S ++ F NM L G VP+ + LD Sbjct: 328 RDETSGRTGQRLVLVLK-RDAVPKVVLNNLYKHSQLQQTFGANMLALVDG-VPRTLSLDA 385 Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPV 416 ++ W+ H+ EV+ RR+ + + + R IL+GLL A IDEII +IR+ + +P Sbjct: 386 FIRHWVNHQLEVIERRTRYLKREAEERDHILQGLLKAMDAIDEIIRLIRSSQGREDARPK 445 Query: 417 MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476 ++ + + Q DAIL+++L L +E +I E + L+ + + +L ++Q + Sbjct: 446 LMEFLDIDQVQADAILSMQLVRLANMERQKIIDEHEELMRKIADYNDILAKPERQRTIVG 505 Query: 477 CEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSH 536 E+ EI +K D RRT S + +I +E + V +++ G+I+ K++ Sbjct: 506 DEL---DEIVAKYGD--ERRTKILPYSGEMNV---EDLIAEENVVVTVTHSGFIKRTKAN 557 Query: 537 SV--------DLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSG 583 + +E D + T + +L + G KAY LP G+ S Sbjct: 558 EYRAQHRGGKGIKGAKLREDDVVDHFFLTSTHNWLLFFTNKGRVYRIKAYELPEGSRDS- 616 Query: 584 RGHGEAIQLLIDLNHNQDIVTAFVYDS--TCKLLVVSSK 620 G+ + L+ ++ I T + K LV++++ Sbjct: 617 --KGQHVANLLQFGPDETIQTVLSIPNYEVAKYLVLATR 653 >gi|172079626|ref|ZP_02709658.2| DNA topoisomerase IV, A subunit [Streptococcus pneumoniae CDC1873-00] gi|225858654|ref|YP_002740164.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae 70585] gi|225861251|ref|YP_002742760.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae Taiwan19F-14] gi|237650392|ref|ZP_04524644.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae CCRI 1974] gi|237822241|ref|ZP_04598086.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae CCRI 1974M2] gi|298229150|ref|ZP_06962831.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae str. Canada MDR_19F] gi|298255379|ref|ZP_06978965.1| DNA topoisomerase IV subunit A [Streptococcus pneumoniae str. Canada MDR_19A] gi|172042094|gb|EDT50140.1| DNA topoisomerase IV, A subunit [Streptococcus pneumoniae CDC1873-00] gi|225720948|gb|ACO16802.1| DNA topoisomerase IV, A subunit [Streptococcus pneumoniae 70585] gi|225727348|gb|ACO23199.1| DNA topoisomerase IV, A subunit [Streptococcus pneumoniae Taiwan19F-14] Length = 826 Score = 366 bits (940), Expect = 6e-99, Method: Compositional matrix adjust. Identities = 223/709 (31%), Positives = 398/709 (56%), Gaps = 33/709 (4%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 N++ +SL + ER+ Y+ I++RA+PD+RDG KPV RRI+++M++ F +++KS Sbjct: 6 NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 65 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 A+ VG ++G HPHGD S+YD++VR++Q + R L+ GN G++DGD AA RYTEAR Sbjct: 66 AKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 125 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 ++++A +LQ +++ V F +++ + EP V P+ FPNLL NG++GI+ G AT IP HN Sbjct: 126 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 185 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 + E+ +AA+ +ID+P I+KL+E++ GPDFPTG II + R+ I ++Y G+G VR++ Sbjct: 186 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAII-QGRDEIKKAYETGKGRVVVRSK 244 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315 +E++ G IV+TEIPY++ K+ L++KI ++ + ++ + ++RDES D + Sbjct: 245 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 304 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 + + +L++ +F +D++ + NM + P+ + + IL ++AHRREV+ R Sbjct: 305 LKKDANTELVLNYLFKYTDLQINYNFNMVAID-NFTPRQVGIVPILSSYIAHRREVILAR 363 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432 S F + ++R+ I++GL+ +DE+IA+IR N+ K + + TE Q +AI+ Sbjct: 364 SRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIV 423 Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492 L+L L + ++ E L + + +++ + +N + E+REVK+ F+ Sbjct: 424 TLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP--- 480 Query: 493 GRRRTTFCEVSRA---DKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FK 546 R ++ + ++A D A+L I +E V ++ G+I+ S S L + Sbjct: 481 --RLSSLEDTAKAIEIDTASL----IAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKR 534 Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIV 603 + D L A TT +L+ ++ G P L R GE + Q + + N++I+ Sbjct: 535 DDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEIL 594 Query: 604 TAFV---YDSTCKLLVVSSKGNAFIVEESEIIA-NTRKGKT--FLKVSSE-EKMKLVVKV 656 V +D V+ G VE E T + K+ + K+ + +++ V + Sbjct: 595 YVEVLDQFDDATTYFAVTRLGQIKRVERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPI 654 Query: 657 TGDHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDGGI--SDVIC 702 D V +V +N L F+I+++P + ++ GV+ + K+ + S IC Sbjct: 655 KLDDVVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSGFIC 703 >gi|154249480|ref|YP_001410305.1| DNA gyrase, A subunit [Fervidobacterium nodosum Rt17-B1] gi|154153416|gb|ABS60648.1| DNA gyrase, A subunit [Fervidobacterium nodosum Rt17-B1] Length = 823 Score = 366 bits (940), Expect = 6e-99, Method: Compositional matrix adjust. Identities = 220/624 (35%), Positives = 376/624 (60%), Gaps = 26/624 (4%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 + NV L L + YL+Y++S I RAIPD+RDG KPV RRII++M E+GL FK Sbjct: 18 QNNVFERVLEDELVKSYLSYSMSVIIGRAIPDVRDGLKPVQRRIIYSMYELGLFHNKPFK 77 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 K+ARIVGEV+GK HPHGD S+Y++LVR+AQP++ RY L+ GQGNFG+ID D AA RYTE Sbjct: 78 KTARIVGEVMGKYHPHGDSSIYEALVRMAQPWLMRYSLVEGQGNFGSIDRDPPAAMRYTE 137 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 AR+ ++AE +++ +D+ V D ++ EP V P+K PNLL NG SGIAVGMAT+IP+ Sbjct: 138 ARLHKIAEEMVEDIDKQTVKMLDNFDGSLQEPDVLPAKVPNLLLNGASGIAVGMATNIPT 197 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ ++ +A +A I N +IS+E+L++ I GPDFPT G I+ + I E Y G+GGF +R Sbjct: 198 HNLNDVVDATIAYIKNRDISVEELIDIIKGPDFPT-GGIIIGKSGIREMYITGKGGFTIR 256 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIV 312 + ++ + I++TEIPY + K+ LI++IA+ + + IP ++D+RDES +D +R+V Sbjct: 257 GKAEIKH-EKKKKSIIITEIPYGISKAELIKQIADYLQEEEIP-VKDLRDESDKDGLRVV 314 Query: 313 L-FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371 + FP++ + ++++ +++ ++++TRF N V+ + P++M L +++ ++ HR EV Sbjct: 315 IEFPED--VKEEVILNNLYQKTNLQTRFNANFLVIDGDKQPRLMNLKQLIEAYVKHRFEV 372 Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDKPKPV--MVSRFSLTENQV 428 + +R+ + Q +R I++GL+ A ID +++IIR ++D + + +V ++E Q Sbjct: 373 VRKRTQYAYQQDSKRAHIVEGLIKASKAIDTVVSIIRSSKDSSEALSQLVDILQMSEEQA 432 Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488 A+L++RL L LE ++ E +LL EK LL + + + I E+ E+K+ + Sbjct: 433 KAVLDMRLGRLTNLETQNLQQEYRDLLVRLEKEKELLMNDDKVYEVIIEELEEIKKKYGD 492 Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI--------RSLKSHSVDL 540 R+T ++ ++ +I + I + ++ +G++ R+ + + + Sbjct: 493 P-----RKTEITDLEETATKFDKKDLIPNKDIVITLTKKGFLKLMDIDAFRTQRRNGKGV 547 Query: 541 SALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL-LSGRG-HGEAIQLLIDLNH 598 + E D + +++ + L ++ GK Y + ++ S RG G+ I I L + Sbjct: 548 IGANLMEDDIISQIIYSKLHSKTLFFTSLGKVYEIENLDIEESNRGTKGKPINKYIKLEN 607 Query: 599 NQDIVTAF-VYDSTCKLLVVSSKG 621 + ++ + D +L V+ KG Sbjct: 608 GERVLAMVDITDYVGELFFVTKKG 631 >gi|319944279|ref|ZP_08018555.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lautropia mirabilis ATCC 51599] gi|319742574|gb|EFV94985.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Lautropia mirabilis ATCC 51599] Length = 905 Score = 366 bits (940), Expect = 7e-99, Method: Compositional matrix adjust. Identities = 251/738 (34%), Positives = 384/738 (52%), Gaps = 73/738 (9%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 +SL ++ +L YA+S I RA+PD+RDG KPVHRR+++AM E+ + + KSAR+V Sbjct: 20 ISLEQEMKRSFLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNVWNRPYLKSARVV 79 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 G+V+GK HPHGD ++YD++VR+AQ F RY L+ GQGNFG++DGD AA RYTE R+ ++ Sbjct: 80 GDVMGKYHPHGDSAIYDTVVRMAQDFSLRYTLVDGQGNFGSVDGDPPAAMRYTEIRLRKI 139 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 A ++ +++D VDF Y+ SEP V P+K PNLL NG++GIAV MAT+IP HN+ E+ Sbjct: 140 ASEMVVDIEKDTVDFGPNYDGSTSEPQVLPAKIPNLLINGSTGIAVAMATNIPPHNLHEV 199 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 A L L++NP+ +I++L+E I PDFPTG +I + E YR GRG +RA+ E Sbjct: 200 VAACLLLLENPDATIDELIEKIPAPDFPTGALIY-GVAGVREGYRTGRGRVVMRAKTHFE 258 Query: 260 EVGRGS--WCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317 ++ + I+V EIPYQV K+ L +KIAEL+ K+I + DIRDES + V+ Sbjct: 259 DMDKAGNRQAIIVDEIPYQVNKAVLQQKIAELVNEKKIEGISDIRDESDKQGMRVVIELK 318 Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377 R + ++++ ++F L+ ++ F +NM L G+ P+++ L +L+ +LAHRREV+ RR+ Sbjct: 319 RGENAEVVLNNLFKLTQLQDSFGINMVALVDGQ-PRLLNLKQVLEAFLAHRREVVTRRTV 377 Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV-----------------MVSR 420 + + R +L+GL +A +N+DE+I +I++ P PV MV R Sbjct: 378 YELNKARDRGHLLEGLAVAVVNVDEMIELIKSSPTP-PVAKERLLARTWAAGIAAEMVER 436 Query: 421 ------------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLA 456 + L+E Q IL +RL+ L LE+ +I +E ++ Sbjct: 437 AAGDVSALRPEGIDPNAGLQPDGTYQLSEVQAGEILQMRLQRLTGLEQEKIVTEYREVVD 496 Query: 457 EKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIE 516 + +L + I E+ V E F RR S D L I Sbjct: 497 RILDLLDILAKPARITAIIRDELTGVVEEFGGPEKDPRRSQIELNASEIDIEDL----IT 552 Query: 517 KEPITVVISNRGWI--------RSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLST 568 + + V +SN G+I RS + A K+ D + A+T D IL S Sbjct: 553 PQDMVVTLSNSGYIKAQPLSEYRSQRRGGRGKQAASTKDDDWVDQLFIANTHDTILCFSD 612 Query: 569 DGKAYTL-----PAGNLLSGRGHGEAIQLLIDLNHNQDIVTAF---VYDSTCKLLVVSSK 620 G+ Y L P G+ S G I + L N+ I +D + + +S Sbjct: 613 RGRVYWLKVWEVPQGSRAS---RGRPIVNMFPLAENEKITVVLPIKTFDDEHYVFMATSL 669 Query: 621 GNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVT-GDH-VAVVGENRKLLIFSIDQI 678 G S+ +N RK E + VT G+H V + + K + FS + Sbjct: 670 GTVKKTALSD-FSNPRKAGIIAVDLDEGDYLIGAAVTDGEHDVMLFSDAGKAVRFSEGDV 728 Query: 679 PEMSR-GKGVRLQSYKDG 695 M R +GVR + ++G Sbjct: 729 RAMGRTARGVRGMALEEG 746 >gi|73916870|gb|AAZ93303.1| topoisomerase IV subunit A [Streptococcus pneumoniae] gi|73916904|gb|AAZ93320.1| topoisomerase IV subunit A [Streptococcus pneumoniae] Length = 821 Score = 366 bits (940), Expect = 7e-99, Method: Compositional matrix adjust. Identities = 223/709 (31%), Positives = 398/709 (56%), Gaps = 33/709 (4%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 N++ +SL + ER+ Y+ I++RA+PD+RDG KPV RRI+++M++ F +++KS Sbjct: 1 NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 60 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 A+ VG ++G HPHGD S+YD++VR++Q + R L+ GN G++DGD AA RYTEAR Sbjct: 61 AKSVGNIMGNFHPHGDYSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 120 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 ++++A +LQ +++ V F +++ + EP V P+ FPNLL NG++GI+ G AT IP HN Sbjct: 121 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 180 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 + E+ +AA+ +ID+P I+KL+E++ GPDFPTG II + R+ I ++Y G+G VR++ Sbjct: 181 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAII-QGRDEIKKAYETGKGRVVVRSK 239 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315 +E++ G IV+TEIPY++ K+ L++KI ++ + ++ + ++RDES D + Sbjct: 240 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 299 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 + + +L++ +F +D++ + NM + P+ + + IL ++AHRREV+ R Sbjct: 300 LKKDANTELVLNYLFKYTDLQINYNFNMVAID-NFTPRQVGIVPILSSYIAHRREVILAR 358 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432 S F + ++R+ I++GL+ +DE+IA+IR N+ K + + TE Q +AI+ Sbjct: 359 SRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIV 418 Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492 L+L L + ++ E L + + +++ + +N + E+REVK+ F+ Sbjct: 419 TLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP--- 475 Query: 493 GRRRTTFCEVSRA---DKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FK 546 R ++ + ++A D A+L I +E V ++ G+I+ S S L + Sbjct: 476 --RLSSLEDTAKAIEIDTASL----IAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKR 529 Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIV 603 + D L A TT +L+ ++ G P L R GE + Q + + N++I+ Sbjct: 530 DDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEIL 589 Query: 604 TAFV---YDSTCKLLVVSSKGNAFIVEESEIIA-NTRKGKT--FLKVSSE-EKMKLVVKV 656 V +D V+ G VE E T + K+ + K+ + +++ V + Sbjct: 590 YVEVLDQFDDATTYFAVTRLGQIKRVERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPI 649 Query: 657 TGDHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDGGI--SDVIC 702 D V +V +N L F+I+++P + ++ GV+ + K+ + S IC Sbjct: 650 KLDDVVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSGFIC 698 >gi|296137760|ref|YP_003645003.1| DNA gyrase subunit alpha [Tsukamurella paurometabola DSM 20162] gi|296025894|gb|ADG76664.1| DNA gyrase, A subunit [Tsukamurella paurometabola DSM 20162] Length = 837 Score = 366 bits (940), Expect = 7e-99, Method: Compositional matrix adjust. Identities = 247/777 (31%), Positives = 408/777 (52%), Gaps = 38/777 (4%) Query: 3 VDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMS 62 D + T + ++ V ++ ++ Y+ YA+S I RA+P++RDG KPV RRI++A Sbjct: 2 TDTTPPTETGGHDRIEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGMKPVQRRILYASY 61 Query: 63 EMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNID 122 + G ++ KSA+ V E +G HPHGD ++YD+LVRLAQP+ RYPLI GQGNFG+ Sbjct: 62 DAGYRPDRSYVKSAKPVAETMGNYHPHGDSAIYDALVRLAQPWSMRYPLIDGQGNFGSPG 121 Query: 123 GDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSG 182 D AAA RYTEAR+T +A +L+G+D++ VDF Y+ + EP V P++ PNLL NG+ G Sbjct: 122 NDPAAAMRYTEARLTPLAMEMLRGIDQETVDFAPNYDGKTQEPTVLPARVPNLLMNGSGG 181 Query: 183 IAVGMATSIPSHNVQEICEAALALIDN----PEISIEKLLEYIIGPDFPTGGIIVESRES 238 IAVGMAT+IP HN++EI EA ++N E ++E +E + GPDFPT G+IV + Sbjct: 182 IAVGMATNIPPHNLREIAEAVFWCLENYDADSEATLEACMERVKGPDFPTHGLIVGG-QG 240 Query: 239 IVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLL 298 I ++Y GRG R+R VEE +G+ +V+TE+PYQV L+ IAE + +I + Sbjct: 241 IKDAYSTGRGSIRMRGVVEVEEDSKGATELVITELPYQVNPDNLVLSIAEQVRDGKIAGI 300 Query: 299 EDIRDESAEDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMP 356 I D+S++ V RIV+ K R +++ +++ S ++T F NM + G VP+ + Sbjct: 301 SKIEDQSSDRVGMRIVVRLK-RDAVAKVVLNNLYKHSQLQTSFGANMLSIVDG-VPRTLR 358 Query: 357 LDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKP 413 LD +++ ++AH+ +V+ RR+ F ++ + R IL+GL+ A +DE+IA+IR + Sbjct: 359 LDQMIRYYVAHQLDVIVRRTKFLLRKAEERAHILRGLVKALDALDEVIALIRASQTTEIA 418 Query: 414 KPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWN 473 + ++ + E Q +AIL+++LR L LE +I EL + E + +L+ ++Q Sbjct: 419 RTGLMELLDVDELQANAILDMQLRKLAALERQKIIDELAEIEREIADLKDILDKPERQRA 478 Query: 474 QIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW---- 529 + E+ E+ E F RRT ++ AD + +I +E + V I+ G+ Sbjct: 479 IVRDELGEIVEKFGDD-----RRT---KIIAADGDVTDEDLIAREDVVVTITETGYAKRT 530 Query: 530 ----IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSG 583 RS K + K+ D ++ T D IL +T G+ Y A L S Sbjct: 531 KTDLYRSQKRGGKGVKGADLKQDDIVRHFFVCSTHDWILFFTTKGRVYRAKAYELPEQSR 590 Query: 584 RGHGEAIQLLIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKT 640 G+ + L+ + I YD L++ + G + +N G Sbjct: 591 TARGQHVANLLAFQPEERIAQVIQIKGYDDAPYLVLATKNGLVKKSRLEDFDSNRSGGIV 650 Query: 641 FLKVSSEEKMKLVVKVTG-DHVAVVGENRKLLIFSIDQIPEMSRGKGVR-LQSYKDGGIS 698 + + E+++ V+ D + +V +N + + FS G+ +Q + G Sbjct: 651 AINLRDEDELVGAALVSSEDDLLLVSKNAQSIRFSATDEALRPMGRATSGVQGMRFNGDD 710 Query: 699 DVICFKICEGLTW--IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753 ++ + + T+ + ++G R+ D G RGG G L + P+ G + + Sbjct: 711 QLLALNVVQEDTYLLVATSGGYAKRTAMDDYPVQG-RGGKGVLTIQFDPKRGDLVGA 766 >gi|227506178|ref|ZP_03936227.1| DNA topoisomerase (ATP-hydrolyzing) [Corynebacterium striatum ATCC 6940] gi|227197202|gb|EEI77250.1| DNA topoisomerase (ATP-hydrolyzing) [Corynebacterium striatum ATCC 6940] Length = 856 Score = 366 bits (940), Expect = 7e-99, Method: Compositional matrix adjust. Identities = 259/785 (32%), Positives = 421/785 (53%), Gaps = 61/785 (7%) Query: 6 ISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65 +S+ N + + ++ + + +E Y+ YA+S I RA+P++RDG KPVHRRI++AM + G Sbjct: 1 MSDQNGDLFDRIQPIDINEEMESSYIDYAMSVIVGRALPEVRDGLKPVHRRILYAMFDSG 60 Query: 66 LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125 + KSAR V + +G+ HPHGD ++YD+LVRLAQ + RYPL+ GQGNFG+ D Sbjct: 61 YRPERGYVKSARPVSDTMGQFHPHGDSAIYDTLVRLAQSWNMRYPLVDGQGNFGSRGNDG 120 Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185 AA RYTE RMT +A +++ + E+ VDF Y+ + EP + PS+ PNLL NG+ GIAV Sbjct: 121 PAAMRYTECRMTPLAMEMVRDIRENTVDFSPNYDGKTQEPDILPSRVPNLLMNGSGGIAV 180 Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLL----EYIIGPDFPTGGIIVESRESIVE 241 GMAT+IP HN+ E+ EA L+DNPE S E+ L E + GPDFPT G+IV + I + Sbjct: 181 GMATNIPPHNLNELAEAIYWLLDNPEASDEEALAACMERVKGPDFPTAGLIV-GDQGIKD 239 Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301 +Y GRG R+R +EE G IV+TE+PYQV +I IAE + +I + I Sbjct: 240 AYTTGRGSIRMRGVTSIEESG-NRQTIVITELPYQVNPDNMISNIAESVANGKIAGIAKI 298 Query: 302 RDESAEDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359 DES++ V RIV+ K R +++ +++ S ++T F NM + G VP+ + LD Sbjct: 299 EDESSDRVGMRIVVTLK-RDAVARVVLNNLYKHSQLQTSFGANMLSIVDG-VPRTLRLDQ 356 Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPV 416 +L+ ++AH+ EV+ RR+ +R+ ++R IL+GL+ A +DE+IA+IR D+ + Sbjct: 357 MLRYYVAHQIEVIVRRTQYRLDEAEKRAHILRGLVKALDMLDEVIALIRRSPTVDEAREG 416 Query: 417 MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN---SGKQQWN 473 + + ++ + Q DAIL ++LR L LE +I E LAE E+I + L + +++ Sbjct: 417 LKTLLAVDDVQADAILAMQLRRLAALERQKIIDE----LAEIEEIIADLKDILAREERQR 472 Query: 474 QIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSL 533 QI + E+ EI K D RRT ++ A + +I +E + V I++ G+ + Sbjct: 473 QIVHD--ELAEIVEKYGD--ERRT---QIVAASGDVTDEDLIARENVVVTITSTGYAKRT 525 Query: 534 KSHSVD--------LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLL-SGR 584 K + + K+ D +K T D IL + G+ Y L A L +GR Sbjct: 526 KVDAYKAQKRGGKGVRGAELKQDDIVKNFFVCSTHDWILFFTNFGRVYRLKAYELPEAGR 585 Query: 585 -GHGEAIQLLIDLNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEII-ANTRKGK 639 G+ + L++ + I Y+ L++ + +G V++S + + + Sbjct: 586 TARGQHVANLLEFQPEEKIAQVIQIQSYEDAPYLVLATKQGR---VKKSRLTDYESARSA 642 Query: 640 TFLKVSSEEKMKLV---VKVTGDHVAVVGENRKLLIFSI--DQIPEMSRG----KGVRLQ 690 + ++ E L+ + GD + + E + + F+ DQ+ M R KG+R + Sbjct: 643 GLIAINLNEGDALIGASLVDEGDDILLTSEQGQAIRFTADDDQLRPMGRATAGVKGMRFR 702 Query: 691 SYKDGGISDVICFKICE--GLTWIDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSG 748 G ++ + G + ++G R+ + G RGG+G + K P+ G Sbjct: 703 -----GDDQLLSMSVVHDGGYLLVATSGGYGKRTAIEEYTPQG-RGGLGVMTFKYTPKRG 756 Query: 749 KFLSS 753 K + + Sbjct: 757 KLIGA 761 >gi|300742651|ref|ZP_07072672.1| DNA gyrase, A subunit [Rothia dentocariosa M567] gi|300381836|gb|EFJ78398.1| DNA gyrase, A subunit [Rothia dentocariosa M567] Length = 881 Score = 366 bits (940), Expect = 7e-99, Method: Compositional matrix adjust. Identities = 202/529 (38%), Positives = 316/529 (59%), Gaps = 20/529 (3%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 N++ + L+ ++ YL YA++ I RA+PD+RDG KPVHRR+I+ M + G AF K Sbjct: 31 NIEQIDLQTEMQRSYLDYAMAVIIGRALPDVRDGLKPVHRRVIYGMYDGGYRPDRAFNKC 90 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 ARIVG+V+G+ HPHGD ++YD+LVRL Q + RYPL GQGNFG+ D AAA RYTE + Sbjct: 91 ARIVGDVMGQFHPHGDSAIYDALVRLIQGWTMRYPLALGQGNFGSPGNDGAAAPRYTETK 150 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 M +A +++ ++ED VDF+ Y+ + EP V P++ PNLL NG+SGIAVGMAT+IP HN Sbjct: 151 MAPIALEMVRDINEDTVDFQPNYDGKSLEPTVLPARIPNLLINGSSGIAVGMATNIPPHN 210 Query: 196 VQEICEAALALIDNPEISIEKLL----EYIIGPDFPTGGIIVESRESIVESYRLGRGGFR 251 ++E+ + NP + E+LL E I GPDFPTG I+ ++ I ++YR GRG Sbjct: 211 LREVAAGVEWFLKNPNATNEELLSALMERIKGPDFPTGATILGTK-GIEDAYRTGRGSIT 269 Query: 252 VRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV-- 309 +RA VEE+ G C+VVTE+PYQ L KIA+LI ++ + D+RDE++ Sbjct: 270 MRAVVNVEEI-HGRTCLVVTELPYQANPDNLAIKIADLIKEGKVTGISDLRDETSGRTGQ 328 Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369 R+V+ K R P +++ +++ + ++ F NM + G VP+ + LD ++ W+ H+ Sbjct: 329 RLVIVLK-RDAVPKVVLNNLYKHTQLQENFSANMLAIVDG-VPRTLSLDAFIRHWVNHQM 386 Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTEN 426 +V+ RR+ +R++ + IL+GLL A +DE+IA+IR D+ + ++ + E Sbjct: 387 DVIVRRTRYRLRQAEEEAHILRGLLKALDALDEVIALIRRSPTADEARSALMDFLDIDEA 446 Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486 Q AILN++LR L LE +I+ D L + ++++ S +Q I+ E+ E+ + Sbjct: 447 QAQAILNMQLRRLAALERQKIQDRHDELQRLIAEYNAIIASEDRQREIISEELGEIVNRY 506 Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKS 535 RRT D + + +I +E + V I+ G+I+ +S Sbjct: 507 GDD-----RRTEILRGFNGDMS--MEDLIPEEEVVVTITRGGYIKRTRS 548 >gi|298503138|ref|YP_003725078.1| DNA topoisomerase [Streptococcus pneumoniae TCH8431/19A] gi|6851038|emb|CAA91551.2| DNA topoisomerase IV [Streptococcus pneumoniae] gi|298238733|gb|ADI69864.1| DNA topoisomerase (ATP-hydrolyzing) [Streptococcus pneumoniae TCH8431/19A] Length = 823 Score = 366 bits (940), Expect = 7e-99, Method: Compositional matrix adjust. Identities = 223/709 (31%), Positives = 398/709 (56%), Gaps = 33/709 (4%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 N++ +SL + ER+ Y+ I++RA+PD+RDG KPV RRI+++M++ F +++KS Sbjct: 3 NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 62 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 A+ VG ++G HPHGD S+YD++VR++Q + R L+ GN G++DGD AA RYTEAR Sbjct: 63 AKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 ++++A +LQ +++ V F +++ + EP V P+ FPNLL NG++GI+ G AT IP HN Sbjct: 123 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 182 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 + E+ +AA+ +ID+P I+KL+E++ GPDFPTG II + R+ I ++Y G+G VR++ Sbjct: 183 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAII-QGRDEIKKAYETGKGRVVVRSK 241 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315 +E++ G IV+TEIPY++ K+ L++KI ++ + ++ + ++RDES D + Sbjct: 242 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 301 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 + + +L++ +F +D++ + NM + P+ + + IL ++AHRREV+ R Sbjct: 302 LKKDANTELVLNYLFKYTDLQINYNFNMVAID-NFTPRQVGIVPILSSYIAHRREVILAR 360 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432 S F + ++R+ I++GL+ +DE+IA+IR N+ K + + TE Q +AI+ Sbjct: 361 SRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIV 420 Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492 L+L L + ++ E L + + +++ + +N + E+REVK+ F+ Sbjct: 421 TLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP--- 477 Query: 493 GRRRTTFCEVSRA---DKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FK 546 R ++ + ++A D A+L I +E V ++ G+I+ S S L + Sbjct: 478 --RLSSLEDTAKAIEIDTASL----IAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKR 531 Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIV 603 + D L A TT +L+ ++ G P L R GE + Q + + N++I+ Sbjct: 532 DDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEIL 591 Query: 604 TAFV---YDSTCKLLVVSSKGNAFIVEESEIIA-NTRKGKT--FLKVSSE-EKMKLVVKV 656 V +D V+ G VE E T + K+ + K+ + +++ V + Sbjct: 592 YVEVLDQFDDATTYFAVTRLGQIKRVERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPI 651 Query: 657 TGDHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDGGI--SDVIC 702 D V +V +N L F+I+++P + ++ GV+ + K+ + S IC Sbjct: 652 KLDDVVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSGFIC 700 >gi|322389471|ref|ZP_08063023.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus parasanguinis ATCC 903] gi|321143849|gb|EFX39275.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Streptococcus parasanguinis ATCC 903] Length = 817 Score = 366 bits (940), Expect = 7e-99, Method: Compositional matrix adjust. Identities = 216/696 (31%), Positives = 391/696 (56%), Gaps = 24/696 (3%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 N++ +SL + ER+ Y+ I+ERA+PD+RDG KPV RRI+++M++ G ++KS Sbjct: 3 NIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTHDKGYRKS 62 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 A+ VG ++G HPHGD S+YD++VR++Q + R L+ GN G++DGD AA RYTEAR Sbjct: 63 AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 ++++A +LQ ++++ V F +++ + EP V P+ FPNLL NG +GI+ G AT IP HN Sbjct: 123 LSEIAGYLLQDIEKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPHN 182 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 + E+ +A + +ID+P ++KL+E++ GPDFPTG II + R+ I ++Y G+G VR++ Sbjct: 183 LAEVIDAVVYMIDHPSAKVDKLMEFLPGPDFPTGAII-QGRDEIKKAYETGKGRVVVRSK 241 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315 +E++ G IVVTEIPY++ K+ L++KI ++ + ++ + ++RDES D + Sbjct: 242 TEIEQLKGGKQQIVVTEIPYEINKAVLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 301 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 + + DL++ +F +D++ + NM + P+ + + IL ++AHRR+++ R Sbjct: 302 LKKDANADLILNYLFKYTDLQVNYNFNMVAID-NYTPRQVGIVPILSSYIAHRRDIIVAR 360 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432 S F + +RR+ I++GL+ +DE+IA+IR N+ K + + TE Q +AI+ Sbjct: 361 SRFDKEKAERRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIV 420 Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492 L+L L + ++ E +L + + +++ + +N + E+REVK++F Sbjct: 421 TLQLYRLTNTDIVTLEEEHASLKEQIATLAAIIGDERTMFNLMKKELREVKKLFGNP--- 477 Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FKEGD 549 RR+ + ++ + ++E+E V ++ G+I+ S + S L ++ D Sbjct: 478 --RRSELQDTAKTIEIDTASLIVEEETF-VSVTRAGYIKRTSPRSFNASTLEEVGKRDDD 534 Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIVTAF 606 L A TT +LL + G A P L + GE + Q L + ++I+ A Sbjct: 535 ELIFVEPAKTTQHLLLFTNLGNAIYRPIHELTDTKWKDIGEHLSQTLTNFEQEEEILFAE 594 Query: 607 VYDS--TCKLLVVSSKGNAFIVEESEIIA-NTRKGKT--FLKVSSEEK-MKLVVKVTGDH 660 + D + +G E E+ T + K+ + K+ ++ + V V + Sbjct: 595 IVDQFEGVTYFAATQQGQIKRFERKELSPWRTYRSKSTKYAKLKDQDDCIVAVAPVVLED 654 Query: 661 VAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDG 695 + ++ +N L F+I+++P + ++ GV+ + KDG Sbjct: 655 IMIITKNGYGLRFNIEEVPVVGAKAAGVKAINLKDG 690 >gi|164510815|emb|CAK18892.1| topoisomerase IV subunit A [Staphylococcus pseudintermedius] Length = 803 Score = 366 bits (940), Expect = 7e-99, Method: Compositional matrix adjust. Identities = 199/587 (33%), Positives = 348/587 (59%), Gaps = 16/587 (2%) Query: 28 ERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLH 87 +R+ Y+ I+ERA+PD+RDG KPV RRI+++M G + F+KSA+ VG+VIG+LH Sbjct: 16 DRFGRYSKYIIQERALPDVRDGLKPVQRRILYSMYSNGNTYDKHFRKSAKTVGDVIGQLH 75 Query: 88 PHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGV 147 PHGD SVYD++VRL+Q + R+ L+ GN G+ID D AA RYTEA+++Q++E IL+ + Sbjct: 76 PHGDISVYDAMVRLSQDWKLRHVLVEMHGNNGSIDNDPPAAMRYTEAKLSQLSEQILRDI 135 Query: 148 DEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALI 207 ++D VDF Y++ + EP+V P++FPNLL NG++GI+ G AT IP HN+ E+ A L I Sbjct: 136 NKDTVDFVPNYDDTEMEPMVLPARFPNLLVNGSTGISAGYATDIPPHNLAEVITATLKYI 195 Query: 208 DNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWC 267 DNP++++++L++YI GPDFPTGG IV+ + I ++Y G+G VRA+ +E + G Sbjct: 196 DNPDLTVKQLMKYIKGPDFPTGG-IVQGIDGIKKAYETGKGKVVVRAKADIETLRNGRSQ 254 Query: 268 IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLME 327 I+VTEIPY+V KS L++KI EL K++ + ++RDE+ V + ++ ++ Sbjct: 255 IIVTEIPYEVNKSSLVKKIDELRADKKVEGIVEVRDETDRSGLRVAVELKKDVNATSILN 314 Query: 328 SIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRV 387 ++ +D++ + NM ++ GR P++M + I+ +L H+ EV+ RR+SF ++ + R+ Sbjct: 315 FLYKNTDLQVAYNFNMVAITEGR-PKLMGIKPIISSYLNHQIEVVTRRTSFDLKHTEERM 373 Query: 388 EILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAILNLRLRSLRKLEE 444 I++GL+ A +DE+IA+IRN K +V + TE Q +AI+ L+L L + Sbjct: 374 HIVEGLMKALSILDEVIALIRNSKNKRDAKENLVKTYDFTEAQAEAIVMLQLYRLTNTDI 433 Query: 445 YQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSR 504 ++ E D L + + +L + + I E+ E+K+ F + R + E Sbjct: 434 VALQEEYDALKQKIAALKHILENHDALLDVIKEELSEIKKQFKQP------RLSVIEEKI 487 Query: 505 ADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA---LHFKEGDSLKIALHAHTTD 561 ++ ++ ++ E + + ++ G+I+ S + S + KE D + + +T D Sbjct: 488 SEIKIDKEVIVPSETVMLSLTQEGYIKRTSLRSFNASGKEEIGLKERDGVLKIIETNTQD 547 Query: 562 RILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAF 606 ++ + G+ +P L + + G+ + ++ + ++ +V + Sbjct: 548 YAMVFTNKGRYLLIPVHKLPDVKWKDLGQHVSQIVPIEEDERVVDCY 594 >gi|313837121|gb|EFS74835.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes HL037PA2] gi|314927853|gb|EFS91684.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes HL044PA1] gi|314971894|gb|EFT15992.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes HL037PA3] gi|328907313|gb|EGG27079.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium sp. P08] Length = 841 Score = 366 bits (940), Expect = 7e-99, Method: Compositional matrix adjust. Identities = 199/526 (37%), Positives = 314/526 (59%), Gaps = 14/526 (2%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 EN+ V + +E +L YA S I RA+PD RDG KPV RRI++ M +MG+ K Sbjct: 12 ENIIDVDVSREMENSFLEYAYSVIYSRALPDARDGLKPVQRRILYTMGDMGVRPDRPHVK 71 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 SAR+VG+V+G+LHPH D ++YD+LVR AQP+ R PL+ G GNFG++D AA RYTE Sbjct: 72 SARVVGQVMGQLHPHSDAAIYDALVRTAQPWAMRLPLVDGHGNFGSLDA-GPAAMRYTEC 130 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 RM ++ G+DED VDF Y+ +++EP V P+ FPNLL NG SGIAVGMAT+IP H Sbjct: 131 RMAPPTLAMIDGLDEDTVDFTPNYDGKETEPSVLPAAFPNLLVNGASGIAVGMATNIPPH 190 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 N+ EI A ++D+P+ +++++ ++ GPD PTGG I+ + + ++YR GRG F++RA Sbjct: 191 NLVEIVAALRHMLDHPDAVLDEIMRFVPGPDLPTGGRII-GLDGVADAYRTGRGSFKIRA 249 Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD--ESAEDVRIV 312 +E+V IVVTE+PY V R+I++I L+ +K+I + D++D + A R+V Sbjct: 250 TARIEKVSPRRRGIVVTELPYMVGPERIIDQIKTLVQSKKITGIADVKDLTDLANGTRLV 309 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 + KN ++P+ L+E ++ L+ +E F N L G+ P+ + L +L+ +L HR EV Sbjct: 310 IEVKN-GINPEALLERLYKLTKLEDSFATNAVCLVEGQ-PRTLGLIDMLQVYLDHRLEVT 367 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVD 429 RR+ F++ R+ +++GLL+A ++ID++IAIIR+ + ++ F L E Q + Sbjct: 368 LRRTKFQLSKAKDRLHLVEGLLMAIVDIDDVIAIIRSSEDATTARTRVMEAFDLDEVQAN 427 Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489 IL+++LR L K +++SE D L E + + N + ++ E+ EV + Sbjct: 428 YILDMQLRRLTKFSTIELESERDELRERIEGLTLIANDKTELRRVVSGELAEVSAKYGTP 487 Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKS 535 RRT + + A + +P V++S G + + S Sbjct: 488 -----RRTVLLGAAPSVAAASVPLEVPDDPCWVLLSATGLLARIDS 528 >gi|73916832|gb|AAZ93284.1| topoisomerase IV subunit A [Streptococcus pneumoniae] Length = 821 Score = 366 bits (940), Expect = 7e-99, Method: Compositional matrix adjust. Identities = 223/709 (31%), Positives = 397/709 (55%), Gaps = 33/709 (4%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 N++ +SL + ER+ Y+ I++RA+PD+RDG KPV RRI+++M++ F +++KS Sbjct: 1 NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 60 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 A+ VG ++G HPHGD S+YD++VR++Q + R L+ GN G++DGD AA RYTEAR Sbjct: 61 AKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 120 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 ++++A +LQ +++ V F +++ + EP V P+ FPNLL NG++GI+ G AT IP HN Sbjct: 121 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 180 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 + E+ +AA+ +ID+P I+KL+E++ GPDFPTG II + R+ I ++Y G+G VR++ Sbjct: 181 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAII-QGRDEIKKAYETGKGRVVVRSK 239 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315 +E + G IV+TEIPY++ K+ L++KI ++ + ++ + ++RDES D + Sbjct: 240 TEIENLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 299 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 + + +L++ +F +D++ + NM + P+ + + IL ++AHRREV+ R Sbjct: 300 LKKDANTELVLNYLFKYTDLQINYNFNMVAID-NFTPRQVGIVPILSSYIAHRREVILAR 358 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432 S F + ++R+ I++GL+ +DE+IA+IR N+ K + + TE Q +AI+ Sbjct: 359 SRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIV 418 Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492 L+L L + ++ E L + + +++ + +N + E+REVK+ F+ Sbjct: 419 TLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP--- 475 Query: 493 GRRRTTFCEVSRA---DKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FK 546 R ++ + ++A D A+L I +E V ++ G+I+ S S L + Sbjct: 476 --RLSSLEDTAKAIEIDTASL----IAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKR 529 Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIV 603 + D L A TT +L+ ++ G P L R GE + Q + + N++I+ Sbjct: 530 DDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEIL 589 Query: 604 TAFV---YDSTCKLLVVSSKGNAFIVEESEIIA-NTRKGKT--FLKVSSE-EKMKLVVKV 656 V +D V+ G VE E T + K+ + K+ + +++ V + Sbjct: 590 YVEVLDQFDDATTYFAVTRLGQIKRVERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPI 649 Query: 657 TGDHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDGGI--SDVIC 702 D V +V +N L F+I+++P + ++ GV+ + K+ + S IC Sbjct: 650 KLDDVVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSGFIC 698 >gi|320095116|ref|ZP_08026825.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Actinomyces sp. oral taxon 178 str. F0338] gi|319977983|gb|EFW09617.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Actinomyces sp. oral taxon 178 str. F0338] Length = 850 Score = 366 bits (940), Expect = 7e-99, Method: Compositional matrix adjust. Identities = 229/634 (36%), Positives = 353/634 (55%), Gaps = 44/634 (6%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 E V+ V L+ ++ YL YA+S I RA+PD+RDG KPVHRR+++AM + G ++F K Sbjct: 16 ERVRQVDLQKEMQRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMYDGGYRPASSFSK 75 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 S+R+VGEV+G HPHGD ++YD+L RL QP+ RYPL++GQGNFG AA RYTE Sbjct: 76 SSRVVGEVMGNYHPHGDAAIYDALARLVQPWSLRYPLVAGQGNFGTPGNLGPAAPRYTEC 135 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 +M +A +++ +DE+ VDF+D Y+ + EP + P++FPNLLANG+ GIAVGMAT IP H Sbjct: 136 KMAPLAMEMVRDIDEECVDFQDNYDGRNQEPTILPARFPNLLANGSEGIAVGMATRIPPH 195 Query: 195 NVQEICEAALALIDNPEIS----IEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250 N++E+ +D+ S +E LL+ I GPDFPTG I+ + I ++YR GRG Sbjct: 196 NLRELARGVQWALDHSGASREELLEALLKLIPGPDFPTGATIL-GHKGIEDAYRTGRGSI 254 Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV- 309 RA VEE+ +G C+VVTE+PYQV L +KIA+L+ +I + DIRDE++ Sbjct: 255 TQRAVVSVEEI-QGRQCLVVTELPYQVNPDNLADKIAQLVRDGQIQGIADIRDETSGRTG 313 Query: 310 -RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368 R+V+ K R +++ +++ + ++ F NM L G VP+ + +DG ++ W+ H+ Sbjct: 314 QRLVIVLK-RDAVAKVVLNNLYKRTPLQENFSANMLALVDG-VPRTLSIDGFIRHWITHQ 371 Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTE 425 +V+ RR+ FR++ R+ IL+G L A +DE+IA+IR D+ + ++ + Sbjct: 372 IDVIVRRTRFRLRKAMERLHILEGYLKALDALDEVIALIRRSPTVDEARAGLIDLLDVDA 431 Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485 Q DAIL L+LR L LE +I E L A + + +L+ ++Q I+ E+ E+ + Sbjct: 432 VQADAILALQLRRLAALERQKILDEHAQLKARVDDLRDILDKPERQRTIISEELSEIVDK 491 Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHS 537 F RRTT D + +I +E + V I+ G+ RS K Sbjct: 492 FGDE-----RRTTILPF---DGEMSMEDLIPEEDVVVTITRDGFAKRTRTDNYRSQKRGG 543 Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTD------GKAYTLPAGNLLSGR-GHGEAI 590 + + GD ++ TT LL T+ KAY +P G GR G+ + Sbjct: 544 KGVRGTQLRGGDVVE-HFFVTTTHHWLLFFTNLGRVYRAKAYEIPEG----GRDAKGQHV 598 Query: 591 QLLIDLNHNQDIVTAF---VYDSTCKLLVVSSKG 621 L+ ++ I Y+ L++ + G Sbjct: 599 ANLLAFQPDERIAQVLAIRTYEDADHLVLATKSG 632 >gi|84497176|ref|ZP_00995998.1| putative DNA gyrase subunit A [Janibacter sp. HTCC2649] gi|84382064|gb|EAP97946.1| putative DNA gyrase subunit A [Janibacter sp. HTCC2649] Length = 921 Score = 366 bits (940), Expect = 8e-99, Method: Compositional matrix adjust. Identities = 224/632 (35%), Positives = 361/632 (57%), Gaps = 40/632 (6%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 + V+ + L ++ Y+ YA+S I RA+PD+RDG KPVHRR+I+AM + G F K Sbjct: 34 DRVEPIDLNTEMQRSYIEYAMSVIVSRALPDVRDGLKPVHRRVIYAMYDGGYRPDRGFNK 93 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 +R+VGEV+G+ HPHGD S+YD+LVRL Q + RYPL+ GQGNFG+ D AAA RYTE Sbjct: 94 CSRVVGEVMGQYHPHGDSSIYDALVRLVQDWSLRYPLVQGQGNFGSPGDDPAAAPRYTEC 153 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 RM ++ +++ +D+ VDF Y+ + EP V PS+FPNLL NG+SGIAVGMAT IP H Sbjct: 154 RMAPLSMELVRDIDKKTVDFAPNYDGKTMEPKVLPSRFPNLLVNGSSGIAVGMATQIPPH 213 Query: 195 NVQEICEAALALIDNPEISIEKLLEYII----GPDFPTGGIIVESRESIVESYRLGRGGF 250 N++E+ AAL ++++P+ + +++L+ ++ GPDFPTG +I+ R+ I ++YR GRG Sbjct: 214 NLREVSAAALWVLEHPDATRDEMLDAVMARIQGPDFPTGALIM-GRKGIEDAYRTGRGSI 272 Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV- 309 +RA VEE+ +G C+VV+E+PYQV L +KIAE + R+ + DIRDE++ Sbjct: 273 IMRAVVEVEEI-QGRQCLVVSELPYQVNPDSLAQKIAEHVKDGRLHGIADIRDETSGRTG 331 Query: 310 -RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368 R+V+ + ++ +++ +++ + ++T F NM L G VP+ +P+D ++ W+ H+ Sbjct: 332 QRLVIVLRRDAV-AKVVLNNLYKHTQLQTNFGANMLALVDG-VPRTLPIDAFIRHWVDHQ 389 Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTE 425 +V+ RR+++ ++ + R+ IL+GLL A +DE+IA+IR + + ++ + E Sbjct: 390 IDVIQRRTAYLLKEAEDRIHILRGLLKALDLLDEVIALIRRSPTAEAARDGLIDLLEIDE 449 Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485 Q AIL L+LR L LE +I E D + E E + +L ++Q N ++ E+ + E Sbjct: 450 IQARAILELQLRRLAALERQKIIDEHDAIQREIEDYEDILAKPERQRNIVSDELGTIVEK 509 Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHF 545 + RR+ + D + +I +E + V I+ G+ + K VD Sbjct: 510 YGDD-----RRSI---IHGFDGDMSMEDLIPEEDVVVTITRGGYAKRTK---VDAYRSQK 558 Query: 546 KEGDSLKIA------LHAH----TTDRILLLSTD------GKAYTLPAGNLLSGRGHGEA 589 + G +K A + AH T+ LL T+ KAY LP + S H Sbjct: 559 RGGKGVKGASLRGEDVVAHFFTTTSHHWLLFFTNLGRVYRAKAYELPDASRDSKGQHVAN 618 Query: 590 IQLLIDLNHNQDIVTAFVYDSTCKLLVVSSKG 621 I H ++ Y+ + L++ + G Sbjct: 619 IMAFQPDEHIAQVLALRNYEISPYLVLATKNG 650 >gi|314988112|gb|EFT32203.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes HL005PA2] gi|314989917|gb|EFT34008.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes HL005PA3] Length = 844 Score = 366 bits (939), Expect = 8e-99, Method: Compositional matrix adjust. Identities = 198/521 (38%), Positives = 314/521 (60%), Gaps = 14/521 (2%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 EN+ V + +E +L YA S I RA+PD RDG KPV RRI++ M +MG+ K Sbjct: 12 ENIIDVDVSREMENSFLEYAYSVIYSRALPDARDGLKPVQRRILYTMGDMGVRPDRPHVK 71 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 SAR+VG+V+G+LHPHGD ++YD+LVR AQP+ R PL+ G GNFG++D AA RYTE Sbjct: 72 SARVVGQVMGQLHPHGDAAIYDALVRTAQPWAMRLPLVDGHGNFGSLDA-GPAAMRYTEC 130 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 RM A ++ G+DED VDF Y+ +++EP V P+ FPNLL NG SGIAVGMAT+IP H Sbjct: 131 RMAPPALTMIDGLDEDTVDFEPNYDGKETEPSVLPAAFPNLLVNGASGIAVGMATNIPPH 190 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 N+ E+ A ++D+P +++++ ++ GPD PTGG I+ + I ++Y GRG F++RA Sbjct: 191 NLVEVVAALRHMLDHPNADLDEIMRFVPGPDLPTGGRII-GLDGIADAYCTGRGSFKIRA 249 Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD--ESAEDVRIV 312 +E+V IVVTE+PY V R+I++I L+ +K+I + D++D + R+V Sbjct: 250 TARIEKVSPRRRGIVVTELPYMVGPERIIDQIKTLVQSKKITGIADVKDLTDLTNGTRLV 309 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 + KN ++P+ L+E ++ L+ +E F +N L G+ P+ + L +L+ +L HR +V Sbjct: 310 IEVKN-GINPEALLERLYKLTKLEDSFAINAVSLVEGQ-PRTLGLLEMLQVYLDHRLDVT 367 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVD 429 RR+ F++ R+ +++GLL+A ++ID++IAIIR+ + V ++ F L E Q + Sbjct: 368 LRRTKFQLNKAQDRLHLVEGLLLAIVDIDDVIAIIRSSEDAAAVRTRLMGTFDLDEVQAN 427 Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489 IL+++LR L K +++SE D L E + ++N + ++ E+ EV + Sbjct: 428 YILDMQLRRLTKFSTIELESERDELRERIEGLTLIVNDKAELRRVVSGELVEVSSKYGTP 487 Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI 530 RRT + + A + +P V++S G + Sbjct: 488 -----RRTVLLGAAPSVAAASAPLEVPDDPCWVLLSATGLL 523 >gi|323464524|gb|ADX76677.1| DNA topoisomerase IV, A subunit [Staphylococcus pseudintermedius ED99] Length = 803 Score = 366 bits (939), Expect = 9e-99, Method: Compositional matrix adjust. Identities = 199/587 (33%), Positives = 347/587 (59%), Gaps = 16/587 (2%) Query: 28 ERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLH 87 +R+ Y+ I+ERA+PD+RDG KPV RRI+++M G + F+KSA+ VG+VIG+LH Sbjct: 16 DRFGRYSKYIIQERALPDVRDGLKPVQRRILYSMYSNGNTYDKHFRKSAKTVGDVIGQLH 75 Query: 88 PHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGV 147 PHGD SVYD++VRL+Q + R+ L+ GN G+ID D AA RYTEA+++Q++E IL+ + Sbjct: 76 PHGDSSVYDAMVRLSQDWKLRHVLVEMHGNNGSIDNDPPAAMRYTEAKLSQLSEQILRDI 135 Query: 148 DEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALI 207 ++D VDF Y++ + EP+V P++FPNLL NG++GI+ G AT IP HN+ E+ A L I Sbjct: 136 NKDTVDFVPNYDDTEMEPMVLPARFPNLLVNGSTGISAGYATDIPPHNLAEVITATLKYI 195 Query: 208 DNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWC 267 DNP++++++L++YI GPDFPTGG IV+ + I ++Y G+G VRA+ +E + G Sbjct: 196 DNPDLTVKQLMKYIKGPDFPTGG-IVQGIDGIKKAYETGKGKVVVRAKADIETLRNGRSQ 254 Query: 268 IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLME 327 I+VTEIPY+V KS L++KI EL K++ + ++RDE V + ++ ++ Sbjct: 255 IIVTEIPYEVNKSSLVKKIDELRADKKVEGIVEVRDEMDRSGLRVAVELKKDVNATSILN 314 Query: 328 SIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRV 387 ++ +D++ + NM ++ GR P++M + I+ +L H+ EV+ RR+SF ++ + R+ Sbjct: 315 FLYKNTDLQVAYNFNMVAITEGR-PKLMGIKPIISSYLNHQIEVVTRRTSFDLKHTEERM 373 Query: 388 EILKGLLIAYLNIDEIIAIIRNEDK---PKPVMVSRFSLTENQVDAILNLRLRSLRKLEE 444 I++GL+ A +DE+IA+IRN K +V + TE Q +AI+ L+L L + Sbjct: 374 HIVEGLMKALSILDEVIALIRNSKNKRDAKENLVKTYDFTEAQAEAIVMLQLYRLTNTDI 433 Query: 445 YQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSR 504 ++ E D L + + +L + + I E+ E+K+ F + R + E Sbjct: 434 VALQEEYDALKQKIAALKHILENHDALLDVIKEELSEIKKQFKQP------RLSVIEEKI 487 Query: 505 ADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSA---LHFKEGDSLKIALHAHTTD 561 ++ ++ ++ E + + ++ G+I+ S + S + KE D + + +T D Sbjct: 488 SEIKIDKEVIVPSETVMLSLTQEGYIKRTSLRSFNASGKEEIGLKERDGVLKIIETNTQD 547 Query: 562 RILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVTAF 606 ++ + G+ +P L + + G+ + ++ + ++ +V + Sbjct: 548 YAMVFTNKGRYLLIPVHKLPDVKWKDLGQHVSQIVPIEEDERVVDCY 594 >gi|218246206|ref|YP_002371577.1| DNA topoisomerase [Cyanothece sp. PCC 8801] gi|218166684|gb|ACK65421.1| DNA topoisomerase (ATP-hydrolyzing) [Cyanothece sp. PCC 8801] Length = 835 Score = 366 bits (939), Expect = 9e-99, Method: Compositional matrix adjust. Identities = 266/779 (34%), Positives = 412/779 (52%), Gaps = 66/779 (8%) Query: 10 NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69 N L + +L ++ YL YA+S I RA+PD+RDG KPVHRRI++AM E+GL Sbjct: 6 NLLATGQIIPTALHTEMKRSYLEYAMSVIVGRALPDVRDGLKPVHRRILYAMYELGLTPD 65 Query: 70 AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAY 129 F+K AR+VG+V+GK HPHGDQ+VYD+LVRL Q F RYPL++G GNFG++D D AA Sbjct: 66 RPFRKCARVVGDVLGKYHPHGDQAVYDALVRLVQDFSSRYPLLAGHGNFGSVDNDPPAAM 125 Query: 130 RYTEARMTQVAEL-ILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMA 188 RYTE R+ +A+ +L+ + E VDF + ++ EPVV P++ P LL NG +GIAVGMA Sbjct: 126 RYTETRLASIADTGMLRDISEAIVDFTNNFDNSQQEPVVLPAQLPILLLNGCTGIAVGMA 185 Query: 189 TSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRG 248 T+IP HN+ EI + +ALID+PE+S EKL + I GPDFPTGG I+ ++E I E+Y GRG Sbjct: 186 TNIPPHNLGEIVDGLVALIDDPELSDEKLWQLIPGPDFPTGGEII-TQEGIREAYATGRG 244 Query: 249 GFRVRARWCVE--EVGRG----SWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIR 302 VR +E +VGR IVVTE+PYQV K+ IEK+A+L+ R+ + DIR Sbjct: 245 IIPVRGITRIETLDVGRKRRRERTAIVVTELPYQVNKAAWIEKMADLVNQGRLEGIADIR 304 Query: 303 DESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILK 362 DES V+ R + +++S++ + +++ F + L + P + L +L+ Sbjct: 305 DESDRTGMRVVIELKRDAKANTVLKSLYKQTALQSNFGAILLALVDNK-PCQLSLRRLLE 363 Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVS 419 E+L R + L R+ + ++ R+ +L GLLIA N+D II I+RN K + Sbjct: 364 EFLRFREQTLTRQYTHELEEAQSRLHLLAGLLIALNNLDAIIDILRNAADGTTAKMRFQA 423 Query: 420 RFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEI 479 +++ Q +AIL + +R L LE +++SE L E++ +LL+ + + ++ Sbjct: 424 ELGISDAQANAILAMPMRRLTGLERQKLQSEHSELQTRIEELQTLLSDRHELLKTLKKDL 483 Query: 480 REVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD 539 R +K F RRT + + K++ + ++EP T +S + K+ S+ Sbjct: 484 RSLKRKFGDP-----RRTRIVQPPKTPKSSSTPNVKKEEPPT-TLSPKTEESPRKTPSLT 537 Query: 540 L-SALHFKEGDSLKIALHAHTTDRI--------------------LLLSTD-GKAY---- 573 L + E L+I + R+ L++ TD GKAY Sbjct: 538 LFTPQPPPENAILEINHQGEASWRLPDGQGQDSPIFRAIIGQKSELMVITDAGKAYPVAV 597 Query: 574 ------TLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST--CKLLVVSSKGNAFI 625 TL A LLS G + N+ I FV + LL+++ +G Sbjct: 598 AEIPPLTLQAIPLLSLLPKGA------QRDANRVIDAGFVPNDPHGYDLLLLTQQGRIKR 651 Query: 626 VEESEIIANTRKGKTFLKVSSEEKMKLVVKVT-GDHVAVVGENRKLLIFSI--DQIPEMS 682 V+ SE+ T +G +K+ +++ V G VA+ ++L + + + IP M Sbjct: 652 VKMSELSDLTNRGLVLIKLKEGDRLGFVCPTQEGQEVAIAISGGRILRYPVTDEVIPLMG 711 Query: 683 R-GKGVRLQSYKDGGISDVICFKI-CEG-LTWIDSAGRSYNRSENDLLGWLGKRGGVGS 738 R +G + ++ G + V C + +G + I S G S +L LGK G +G+ Sbjct: 712 RSAQGNQALKLRNVGETVVNCLTLHSQGEVLLISSLGYGKRLSLTEL--RLGKLGDLGT 768 >gi|297625215|ref|YP_003686978.1| DNA gyrase subunit A [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296920980|emb|CBL55517.1| DNA gyrase subunit A [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 911 Score = 366 bits (939), Expect = 9e-99, Method: Compositional matrix adjust. Identities = 223/611 (36%), Positives = 345/611 (56%), Gaps = 44/611 (7%) Query: 2 GVDNISNSNTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAM 61 GVD I+ + V V L ++ +L YA+S I ERA+PD+RDG KPVHRR+I+ M Sbjct: 26 GVDAIAGP---AKGRVDPVDLTSEIQNSFLDYAMSVIVERALPDVRDGLKPVHRRVIYTM 82 Query: 62 SEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI 121 + G + K +R+VG+V+GK HPHGD ++YD+LVRLAQP+ RYPL+SGQGNFG+ Sbjct: 83 YDGGYRPDRGWNKCSRVVGDVMGKYHPHGDSAIYDTLVRLAQPWAMRYPLVSGQGNFGSP 142 Query: 122 DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTS 181 D AAA RYTE RM +A +++ +D+ VDF+ Y+ D+EP V P++FPNLL NG++ Sbjct: 143 GNDGAAAMRYTECRMAPLAMEMVRDIDQGTVDFQPNYDNRDTEPTVLPARFPNLLVNGST 202 Query: 182 GIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLEY----IIGPDFPTGGIIVESRE 237 GIAVGMAT+IP HN++E+ EA +++PE S E+LLE + GPDFP G +IV R+ Sbjct: 203 GIAVGMATNIPPHNLREVNEAVQWFLEHPEASDEELLEASMARVKGPDFPNGALIV-GRK 261 Query: 238 SIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPL 297 I ++YR GRG +RA +EE +G +VVTE+PY L +KIA+L+ + R+ Sbjct: 262 GIEDAYRTGRGSVTMRAVINIEEDRKGRTELVVTELPYMCNPDNLAQKIADLVNSGRLTG 321 Query: 298 LEDIRDESAEDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVM 355 + DIRD+S+ R+ + K R P ++M +++ + ++ F NM L + VP+ + Sbjct: 322 ISDIRDDSSARTGQRLAIMLK-RDAQPRVVMNNLYKHTQLQDTFGCNMLAL-VDNVPRTL 379 Query: 356 PLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDK 412 LD ++ W+ H+ EV+ RR+ ++Q ++ I +GL+ A +DE+IA+IR ++ Sbjct: 380 RLDQFIRYWVLHQIEVIVRRTEHQLQQAEKEAHIYRGLVKALDMLDEVIALIRRSPTTEQ 439 Query: 413 PKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQI---KSELDNLLAEKEKIDSLLNSGK 469 + + + Q AILN++LR L LE +I ELD L+A+ + I L N + Sbjct: 440 ASAGLQKLLDIDDVQAAAILNMQLRRLAALERQKIIDKMKELDTLIADLKDI--LANRER 497 Query: 470 QQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW 529 Q+ + E+ EI K D R + E +D + I + + V I+ G+ Sbjct: 498 QR----SIVSNELGEIVGKYGDERRTQIIAAEGDFSD-----EDFIPDDDMVVTITRGGY 548 Query: 530 IRSLKSHSV--------DLSALHFKEGDSLKIALHAHTTDRILLLSTDG------KAYTL 575 + ++ + + D ++ L A T + +L TD K + L Sbjct: 549 AKRTRTDQYRPQRRGGKGVRGATLRADDEVQ-HLFATTNHQWILFFTDHGRVYRIKTWQL 607 Query: 576 PAGNLLSGRGH 586 P G + GH Sbjct: 608 PEGGRDAKGGH 618 >gi|73916868|gb|AAZ93302.1| topoisomerase IV subunit A [Streptococcus pneumoniae] gi|73916880|gb|AAZ93308.1| topoisomerase IV subunit A [Streptococcus pneumoniae] gi|73916886|gb|AAZ93311.1| topoisomerase IV subunit A [Streptococcus pneumoniae] gi|73916892|gb|AAZ93314.1| topoisomerase IV subunit A [Streptococcus pneumoniae] gi|73916894|gb|AAZ93315.1| topoisomerase IV subunit A [Streptococcus pneumoniae] gi|73916910|gb|AAZ93323.1| topoisomerase IV subunit A [Streptococcus pneumoniae] gi|73916918|gb|AAZ93327.1| topoisomerase IV subunit A [Streptococcus pneumoniae] Length = 821 Score = 366 bits (939), Expect = 9e-99, Method: Compositional matrix adjust. Identities = 223/709 (31%), Positives = 399/709 (56%), Gaps = 33/709 (4%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 N++ +SL + ER+ Y+ I++RA+PD+RDG KPV RRI+++M++ F +++KS Sbjct: 1 NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 60 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 A+ VG ++G HPHGD S+YD++VR++Q + R L+ GN G++DGD AA RYTEAR Sbjct: 61 AKSVGNIMGNFHPHGDFSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 120 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 ++++A +LQ ++++ V F +++ + EP V P+ FPNLL NG++GI+ G AT IP HN Sbjct: 121 LSEIAGYLLQDIEKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 180 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 + E+ +AA+ +ID+P I+KL+E++ GPDFPTG II + R+ I ++Y G+G VR++ Sbjct: 181 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAII-QGRDEIKKAYETGKGRVVVRSK 239 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315 +E++ G IV+TEIPY++ K+ L++KI ++ + ++ + ++RDES D + Sbjct: 240 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 299 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 + + +L++ +F +D++ + NM + P+ + + IL ++AHRREV+ R Sbjct: 300 LKKDANTELVLNYLFKYTDLQINYNFNMVAID-NFTPRQVGIVPILSSYIAHRREVILAR 358 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432 S F + ++R+ I++GL+ +DE+IA+IR N+ K + + TE Q +AI+ Sbjct: 359 SRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIV 418 Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492 L+L L + ++ E L + + +++ + +N + E+REVK+ F+ Sbjct: 419 TLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP--- 475 Query: 493 GRRRTTFCEVSRA---DKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FK 546 R ++ + ++A D A+L I +E V ++ G+I+ S S L + Sbjct: 476 --RLSSLEDTAKAIEIDTASL----IAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKR 529 Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIV 603 + D L A TT +L+ ++ G P L R GE + Q + + N++I+ Sbjct: 530 DDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEIL 589 Query: 604 TAFV---YDSTCKLLVVSSKGNAFIVEESEIIA-NTRKGKT--FLKVSSE-EKMKLVVKV 656 V +D V+ G VE E T + K+ + K+ + +++ V + Sbjct: 590 YVEVLDQFDDATTYFAVTRLGQIKRVERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPI 649 Query: 657 TGDHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDGGI--SDVIC 702 D V +V +N L F+I+++P + ++ GV+ + K+ + S IC Sbjct: 650 KLDDVVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSGFIC 698 >gi|313141110|ref|ZP_07803303.1| DNA gyrase A subunit [Bifidobacterium bifidum NCIMB 41171] gi|313133620|gb|EFR51237.1| DNA gyrase A subunit [Bifidobacterium bifidum NCIMB 41171] Length = 888 Score = 366 bits (939), Expect = 9e-99, Method: Compositional matrix adjust. Identities = 227/639 (35%), Positives = 357/639 (55%), Gaps = 40/639 (6%) Query: 7 SNSNTLVEEN-VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65 +N ++++N V ++ + + YL YA+S I ERA+PD+RDG KPVHRRI++AM + G Sbjct: 8 ANEQLVLDDNRVAHTDIQKEMRQSYLDYAISVIVERALPDVRDGMKPVHRRIVYAMYDGG 67 Query: 66 LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125 + K AR V +V+G HPHGD ++YDSLVR+AQP+ RY L+ GQGNFG+ D Sbjct: 68 YRPDRGYSKCARPVADVMGNYHPHGDAAIYDSLVRMAQPWSMRYTLVDGQGNFGSAGDDP 127 Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185 AA RYTE RM +A +++ +D+D VDF Y+ EP V P++FPNLLANG+SGIAV Sbjct: 128 PAAMRYTECRMMPLAMEMVRDIDKDTVDFVPNYDGRTQEPTVLPARFPNLLANGSSGIAV 187 Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYII----GPDFPTGGIIVESRESIVE 241 GMAT+IP HN++E+ E +D+PE S E+LL +I GPDFPTG I+ + I + Sbjct: 188 GMATNIPPHNMRELAEGVHWTLDHPEASREELLNALIGIIKGPDFPTGATIL-GHKGIEQ 246 Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301 +YR GRG +RA EE+ +G C+VVTE+PYQV RL I E + +I + D+ Sbjct: 247 AYRTGRGLITMRAVVNTEEI-KGRMCLVVTELPYQVNPDRLAASIREGVRDGKIQGIADM 305 Query: 302 RDESAEDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359 RDE++ R+VL K R P +++ +++ S ++ F NM L G VP+ + LD Sbjct: 306 RDETSGRTGQRLVLVLK-RDAVPKVVLNNLYKHSQLQQTFGANMLALVDG-VPRTLSLDA 363 Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPV 416 ++ W+ H+ EV+ RR+ + + + R IL+GLL A IDE+I +IR+ + +P Sbjct: 364 FIRHWVNHQLEVIERRTRYLKREAEERDHILQGLLKAMDAIDEVIRLIRSSQGREDARPK 423 Query: 417 MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476 ++ + + Q DAIL+++L L +E +I E + L+ + + +L ++Q + Sbjct: 424 LMEFLDIDQVQADAILSMQLVRLANMERQKIIDEHEELMRKIADYNDILAKPERQRTIVG 483 Query: 477 CEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSH 536 E+ EI +K D RRT S + +I +E + V +++ G+I+ K++ Sbjct: 484 DEL---DEIVAKYGD--ERRTKILPYSGEMNV---EDLIAEENVVVTVTHSGFIKRTKAN 535 Query: 537 SV--------DLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSG 583 + +E D + T + +L + G KAY LP G+ S Sbjct: 536 EYRAQHRGGKGIKGAKLREDDVVDHFFLTSTHNWLLFFTNKGRVYRIKAYELPEGSRDS- 594 Query: 584 RGHGEAIQLLIDLNHNQDIVTAFVYDS--TCKLLVVSSK 620 G+ + L+ ++ I T + K LV++++ Sbjct: 595 --KGQHVANLLQFGPDETIQTVLSIPNYEVAKYLVLATR 631 >gi|225351328|ref|ZP_03742351.1| hypothetical protein BIFPSEUDO_02921 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225157672|gb|EEG70955.1| hypothetical protein BIFPSEUDO_02921 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 895 Score = 366 bits (939), Expect = 9e-99, Method: Compositional matrix adjust. Identities = 198/494 (40%), Positives = 298/494 (60%), Gaps = 14/494 (2%) Query: 13 VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72 V+EN+ L + + +L YA S I RA+PD RDG KPV RRII+ M +M L+ + Sbjct: 17 VKENIVETPLNEEMSKSFLEYAYSVIYARALPDARDGLKPVQRRIIYQMGQMNLNPDRPY 76 Query: 73 KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132 KSAR+VGEV+GKLHPHGD ++Y+++VRLAQPF R PL+ G GNFG++D D AA RYT Sbjct: 77 MKSARVVGEVMGKLHPHGDSAIYEAMVRLAQPFAMRLPLVDGHGNFGSLD-DGPAASRYT 135 Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192 EARM Q A + + E+ VDF Y+ + EP V P+ PNLL NG SGIAVGMAT++ Sbjct: 136 EARMAQAALGMNANIGENTVDFTPNYDNKLQEPTVLPAAIPNLLVNGGSGIAVGMATNMA 195 Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252 +HN+ E+ AA L+ +P+ ++E+L+ Y+ GPD+P+GG+IV R I E+Y GRG Sbjct: 196 THNLGEVVAAAKHLMHHPDATLEELMRYVPGPDWPSGGVIV-GRNGIREAYETGRGALTT 254 Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD--ESAEDVR 310 R+ +E V IVVTE+P+ V R++E+I+E + +++ + + D + R Sbjct: 255 RSVTHIENVTARKKAIVVTELPFMVGPERVLERISEGVKNRKLEGISGVIDLTDRHNGTR 314 Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370 +V+ K DP+ ++ + + ++ F +N L GR P M L +L+ W+ HRR Sbjct: 315 LVIEIKT-GFDPNAVLAQLLKHTPLQDNFTINNVALVNGR-PHTMGLKEMLQVWVDHRRV 372 Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQ 427 V+ RRS FR + R+ +++GLL+A ++IDE+I +IR + D K +++ F L E Q Sbjct: 373 VIRRRSEFRKKKALERLHLVEGLLLAMVDIDEVIQVIRSSDDADAAKTKLIAVFDLDEIQ 432 Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487 IL+LRLR L K+ +++SE D+L E++D +L S + N + E+ E + Sbjct: 433 AQYILDLRLRRLTKMSRIELESERDDLKQRIEELDRILASAEALDNVVISEMDEAVATYG 492 Query: 488 KSTDLGRRRTTFCE 501 RRT + Sbjct: 493 TP-----RRTVLLD 501 >gi|9230563|gb|AAF85902.1| topoisomerase IV subunit A [Streptococcus pneumoniae] Length = 823 Score = 366 bits (939), Expect = 1e-98, Method: Compositional matrix adjust. Identities = 225/709 (31%), Positives = 397/709 (55%), Gaps = 33/709 (4%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 N++ +SL + ER+ Y+ I++RA+PD+RDG KPV RRI+++M++ F +++KS Sbjct: 3 NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 62 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 A+ VG ++G HPHGD S+YD++VR++Q + R L+ GN G++DGD AA RYTEAR Sbjct: 63 AKSVGNIMGNFHPHGDFSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 ++++A +LQ +++ V F +++ + EP V P+ FPNLL NG++GI+ G AT IP HN Sbjct: 123 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 182 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 + E+ +AA+ +ID+P ++KL+E++ GPDFPTGGII + R+ I ++Y G+G VR++ Sbjct: 183 LAEVIDAAVYMIDHPTAKVDKLMEFLPGPDFPTGGII-QGRDEIKKAYETGKGRVVVRSK 241 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315 +E++ G IV+TEIPY++ K+ L++KI ++ + ++ + ++RDES D + Sbjct: 242 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 301 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 + + +L++ F +D++ + NM + P+ + + IL ++AHRREV+ R Sbjct: 302 LKKDANTELVLNYFFKYTDLQINYNFNMVAID-NFTPRQVGIVPILSSYIAHRREVILAR 360 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432 S F + ++R+ I++GL+ +DE+IA+IR N+ K + + TE Q +AI+ Sbjct: 361 SRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKISYDFTEEQAEAIV 420 Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492 L+L L + ++ E L + + ++++ + +N + E+REVK+ F+ Sbjct: 421 TLQLYRLTNTDVVVLQEEEAELREKIAMLAAIISDERTMYNLMKKELREVKKKFATP--- 477 Query: 493 GRRRTTFCEVSRA---DKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FK 546 R +T + ++A D A+L I +E V ++ G+I+ S S L + Sbjct: 478 --RLSTLEDTAKAIEIDTASL----IAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKR 531 Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIV 603 + D L A TT +L+ +T G P L R GE + Q + + N++I+ Sbjct: 532 DDDRLIFIQSAKTTQHLLMFTTFGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEIL 591 Query: 604 TAFV---YDSTCKLLVVSSKGNAFIVEESEIIA-NTRKGKT--FLKVSSE-EKMKLVVKV 656 V +D + G VE E T K K+ + K+ E +++ V + Sbjct: 592 YVEVVDQFDDATTYFAATRLGQIKRVERKEFTPWRTYKSKSVKYAKLKDETDQIVAVAPI 651 Query: 657 TGDHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYK--DGGISDVIC 702 D V ++ +N L F+I+++P + ++ GV+ + K D + IC Sbjct: 652 KLDDVVLISQNGYALRFNIEEVPVVGAKAAGVKAINLKADDALQAAFIC 700 >gi|253576487|ref|ZP_04853816.1| DNA topoisomerase IV, A subunit [Paenibacillus sp. oral taxon 786 str. D14] gi|251844124|gb|EES72143.1| DNA topoisomerase IV, A subunit [Paenibacillus sp. oral taxon 786 str. D14] Length = 810 Score = 366 bits (939), Expect = 1e-98, Method: Compositional matrix adjust. Identities = 231/698 (33%), Positives = 385/698 (55%), Gaps = 27/698 (3%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 EN L + +R+ Y+ I++RAIPD+RDG KPV RRI++AM + G ++K Sbjct: 3 ENFLPAFLEEVVGDRFGRYSKYIIQDRAIPDIRDGLKPVQRRILYAMYDSGNTPDKPYRK 62 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 SA+ VG+V+G HPHGD S+Y+ +VR+AQP+ + LI G GN+G+ D D AAA RYTEA Sbjct: 63 SAKTVGDVMGNYHPHGDSSIYEGMVRMAQPWKMGHALIDGHGNWGSQDDDPAAAMRYTEA 122 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 R++ +A +L+ +++ V F+D ++ EPVV P++FPNLL NG SGI+ G AT IP H Sbjct: 123 RLSAIAMELLRDIEKRTVPFKDNFDNTAKEPVVLPARFPNLLVNGASGISAGFATEIPPH 182 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 N++E+ +A +AL++ PE+++E++ ++ GPDFPTGGII+ E I E+Y G+G +R+ Sbjct: 183 NLREVIDACIALMEKPEMTLEEIRLFVKGPDFPTGGIIM-GEEGIREAYETGKGRIYLRS 241 Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVL 313 + +E + G IV+TEIPYQV KSRL+ + + + K++ + ++RDES + +RIV+ Sbjct: 242 KTEIETLRGGKQQIVITEIPYQVVKSRLVTAMENIRLEKKVEGIAEVRDESGRNGLRIVV 301 Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373 K + D ++ + +D++ + NM V + + P+ + L +L+ ++AH+REV+ Sbjct: 302 ELK-KDADAQGILAYLLKKTDLQVTYNFNM-VAIVNKAPRQLGLKAMLEAYIAHQREVVT 359 Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAII---RNEDKPKPVMVSRFSLTENQVDA 430 R+ + ++ ++ R +L+GL+ A +DE+IA I +N + + F TE Q DA Sbjct: 360 YRTQYELEKLEDRAHVLEGLVKALNILDEVIAAIKASKNRQDAQNNLQWMFGFTERQADA 419 Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKST 490 IL L+L L LE ++ EL+++ + + +L S K+ I E+ E+++ + Sbjct: 420 ILTLQLYRLTNLEITTLQKELEDIQKKITVLRGILESDKKLIALIKRELIEIRDKYG--- 476 Query: 491 DLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH-----F 545 + RR EV K L + ++ +E + V IS G+I+ S S Sbjct: 477 -IDRRSHIQDEVEEL-KVNL-EVLVAQEDVLVTISREGYIKRTSMLSFTRSGGERDGSGV 533 Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIV 603 KEGD +K L T +L+ + G+ + LP + + +G AI +I L IV Sbjct: 534 KEGDYIKYLLEVDTLQNLLIFTQRGQYFLLPVHQIPEFKWKDNGTAIVNVIPLAKEDRIV 593 Query: 604 T-----AFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVS-SEEKMKLVVKVT 657 + +F + L+ V+ G E E KV +E + + V Sbjct: 594 SVIPVKSFDENPELSLVFVTKNGQVKRTELKEYEKKRSGAVAACKVGDGDEVLSVTVSRN 653 Query: 658 GDHVAVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKD 694 + ++ + + F+ D++ M R GVR + KD Sbjct: 654 NQEILLLTKQGMAIRFAEDEVNPMGRVSAGVRGINLKD 691 >gi|42561046|ref|NP_975497.1| topoisomerase IV subunit A [Mycoplasma mycoides subsp. mycoides SC str. PG1] gi|42492543|emb|CAE77139.1| TOPOISOMERASE IV SUBUNIT A [Mycoplasma mycoides subsp. mycoides SC str. PG1] Length = 898 Score = 366 bits (939), Expect = 1e-98, Method: Compositional matrix adjust. Identities = 236/743 (31%), Positives = 420/743 (56%), Gaps = 41/743 (5%) Query: 24 FALEE----RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 + LEE R+ YA I+ERA+PD+RDG KPV RRI++AM+++ L F +KKSAR+V Sbjct: 10 YPLEELLGNRFSRYAKYIIQERALPDVRDGLKPVQRRILYAMNQLNLTFDKPYKKSARVV 69 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 GEVIGK HPHGD S+YD++VR++Q + PL+ QGN G+IDGDSAAA RYTEAR+T++ Sbjct: 70 GEVIGKYHPHGDSSIYDAMVRMSQWWKVNIPLVDMQGNNGSIDGDSAAAMRYTEARLTKI 129 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 + L+L+ ++++ V F +++ ++EP V PS FPN+L NG +GIA G AT++P HN+ EI Sbjct: 130 SNLLLEDLEKNTVIFSPNFDDSETEPTVLPSYFPNILVNGATGIAAGYATNMPPHNLSEI 189 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 +A + +I NP I+I+++L+ + GPDFPTG II ++++ I E++ G+G + ++W E Sbjct: 190 IDATINIIKNPNITIDQILKIVKGPDFPTGAII-QNKQGIREAFLTGKGKVIISSKWHQE 248 Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319 + IV+ EIPY+V K L++KI ++I +++IRDE+ ++ N Sbjct: 249 KNN-----IVIDEIPYEVVKQDLVKKIGDVIDNNSNLGIKEIRDETDRKGLRIVIELNEK 303 Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379 + + + + +F + + + N N++ + + P+ + L I+K +++H +EV +R+ F Sbjct: 304 ANLETVRKFLFKSTWLSVSYNYN-NIIIVDKQPKQLGLIDIIKAYISHYKEVFIKRTEFN 362 Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDKPKPV--MVSRFSLTENQVDAILNLRL 436 + + R+EI+ GL+ A +DE+I +IR +E++ + +V F T NQ AI+++RL Sbjct: 363 LNKANLRLEIVNGLIKALSILDEVIKVIRKSENRLDAINNLVITFKFTTNQATAIVDMRL 422 Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496 L + ++ E L+ + +K +LN+ N+I + E K+ F G +R Sbjct: 423 YRLTSTDVNKLLLEKTELIDKIKKYQEILNNSLVLDNEIISRLEEAKKQF------GIKR 476 Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD---LSALHFKEGDSLKI 553 + E D Q+ +I ++ I + IS G+I+ + ++ ++ LS+ K D Sbjct: 477 KSQVEDLVEDLDVDQKEVIIEKEINLWISKDGYIKVIDNNILNKNELSSFGKKPNDMWIS 536 Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDIVTAFV---- 607 D ++L+S Y++P + + + G I + N+ I+ A V Sbjct: 537 QGVCSNLDHLILISDQANYYSIPLYKISTSKWKEQGVHINSVATTQPNETIINALVIKEF 596 Query: 608 YDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTF--LKVSSEEKMKL--VVKVTGDHV 661 +ST LL+VS G +++ ++I K K+F +K+S ++ + ++ + Sbjct: 597 INSTQHLLLVSKNG---LIKRTQISDLETKIFNKSFKIMKISDDDSLVYADLISSKTSYC 653 Query: 662 AVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYN 720 ++ +N + ++I+ IP S KGV+ + KD I + + + + I + +Y Sbjct: 654 CIITKNGYAVRYNIEDIPVQSTISKGVKAANLKDDYIISALSLQNNKDV-LIFTNKNNYK 712 Query: 721 RSENDLLG-WLGKRGGVGSLVPK 742 R + +L+ ++ + G+ LV K Sbjct: 713 RLDQNLIPIYIRPKKGIRILVEK 735 >gi|73916926|gb|AAZ93331.1| topoisomerase IV subunit A [Streptococcus pneumoniae] Length = 821 Score = 365 bits (938), Expect = 1e-98, Method: Compositional matrix adjust. Identities = 222/709 (31%), Positives = 398/709 (56%), Gaps = 33/709 (4%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 N++ +SL + ER+ Y++ I++RA+PD+RDG KPV RRI+++M++ F +++KS Sbjct: 1 NIQNMSLEDIMGERFGRYSMYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 60 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 A+ VG ++G HPHGD S+YD++VR++Q + R L+ GN G++DGD AA RYTEAR Sbjct: 61 AKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 120 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 ++++A +LQ +++ V F +++ + EP V P+ FPNLL NG++GI+ G AT IP HN Sbjct: 121 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 180 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 + E+ +AA+ +ID+P I+KL+E++ GPDFPTG II + R+ I ++Y G+G VR++ Sbjct: 181 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAII-QGRDEIKKAYETGKGRVVVRSK 239 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315 +E++ G IV+ EIPY++ K+ L++KI ++ + ++ + ++RDES D + Sbjct: 240 TEIEKLKGGKEQIVIIEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 299 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 + + +L++ +F +D++ + NM + P+ + + IL ++AHRREV+ R Sbjct: 300 LKKDANTELVLNYLFKYTDLQINYNFNMVAID-NFTPRQVGIVPILSSYIAHRREVILAR 358 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432 S F + ++R+ I++GL+ +DE+IA+IR N+ K + + TE Q +AI+ Sbjct: 359 SRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIV 418 Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492 L+L L + ++ E L + + +++ + +N + E+REVK+ F+ Sbjct: 419 TLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP--- 475 Query: 493 GRRRTTFCEVSRA---DKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FK 546 R ++ + ++A D A+L I +E V ++ G+I+ S S L + Sbjct: 476 --RLSSLEDTAKAIEIDTASL----IAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKR 529 Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIV 603 + D L A TT +L+ ++ G P L R GE + Q + + N++I+ Sbjct: 530 DDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEIL 589 Query: 604 TAFV---YDSTCKLLVVSSKGNAFIVEESEIIA-NTRKGKT--FLKVSSE-EKMKLVVKV 656 V +D V+ G VE E T + K+ + K+ + +++ V + Sbjct: 590 YVEVLDQFDDATTYFAVTRLGQIKRVERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPI 649 Query: 657 TGDHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDGGI--SDVIC 702 D V +V +N L F+I+++P + ++ GV+ + K+ + S IC Sbjct: 650 KLDDVVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSGFIC 698 >gi|311898783|dbj|BAJ31191.1| putative type II topoisomerase [Kitasatospora setae KM-6054] Length = 816 Score = 365 bits (938), Expect = 1e-98, Method: Compositional matrix adjust. Identities = 220/575 (38%), Positives = 336/575 (58%), Gaps = 16/575 (2%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 EE + V + ++ +L YA S I RA+PD RDG KPVHRRI++ +EMGL Sbjct: 15 EERILDVDVVDEMQGSFLEYAYSVIYSRALPDARDGLKPVHRRILYQANEMGLRPERGHV 74 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYT 132 K AR+VGEV+G+LHPHGD S+YD++VRLAQPF R PLI G GNFG++ + D AA RYT Sbjct: 75 KCARLVGEVMGRLHPHGDASIYDAVVRLAQPFSMRLPLIDGHGNFGSLGNDDPPAAMRYT 134 Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192 E+R+T + +++ + ED VDF Y+ + EP V PS FPNLL NG +GIAVGMAT++P Sbjct: 135 ESRLTAASMSMVESIHEDTVDFGPNYDGSEQEPQVLPSAFPNLLVNGATGIAVGMATNMP 194 Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252 HN+ E+ AA LI +P +E L+ ++ GPD PTGG IV I ++Y GRG F++ Sbjct: 195 PHNLAEVVAAARHLIKHPAADLETLMRFVPGPDLPTGGRIV-GLSGIRDAYESGRGTFKI 253 Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD--ESAEDVR 310 RA +E V IVVTE+PY V ++I KI +L+ AK++ + D++D + +R Sbjct: 254 RATTSIENVTARRKGIVVTELPYTVGPEKVIAKIKDLVNAKKLQGIADVKDLTDREHGLR 313 Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370 +V+ KN P+ L+E ++ L+ ME F +N L G+ P + L +L+ ++ HR Sbjct: 314 LVIEVKN-GFVPEALLEQLYKLTPMEETFGINNVALVDGQ-PLTLGLKELLEVYVDHRFT 371 Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQ 427 V+ RRS FR + R+ +++GLL+A ++IDE+IA+IR+ D + K ++ RF L+E Q Sbjct: 372 VVKRRSDFRRRKRQDRLHLVEGLLVALVDIDEVIAVIRSSDDAGQAKDRLMERFGLSETQ 431 Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487 IL+ LR L + + ++++E LL E ++ +L S + + ++ E+ V + F Sbjct: 432 TAYILDTPLRRLTRFDRVELEAEQSKLLKEIAELTEILESDHKLRSVVSSELGSVAKQFG 491 Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAM-IEKEPITVVISNRGWI-RSLKSHSVDLSALHF 545 RRT E A L + + +P V++S+ G + R+ V + Sbjct: 492 TE-----RRTVLLEAGSVPSAALAVPLEVADDPCRVLLSSTGLLARTFDLKPVTEESAAR 546 Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL 580 + D L A+ A + L++T G+ LP +L Sbjct: 547 AKHDVLASAVPATARGDVGLVTTAGRVLRLPVIDL 581 >gi|54021971|ref|YP_116213.1| DNA gyrase subunit A [Nocardia farcinica IFM 10152] gi|54013479|dbj|BAD54849.1| putative DNA gyrase A subunit [Nocardia farcinica IFM 10152] Length = 836 Score = 365 bits (938), Expect = 1e-98, Method: Compositional matrix adjust. Identities = 215/587 (36%), Positives = 335/587 (57%), Gaps = 33/587 (5%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 + V+ V ++ ++ Y+ YA+S I RA+P++RDG KPVHRRI++AM + G + K Sbjct: 13 DRVEPVDIQQEMQNSYIDYAMSVIVGRALPEVRDGLKPVHRRILYAMYDNGYRPDRGYVK 72 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 SAR V + +G HPHGD ++YD+LVR+AQP+ RYPL+ GQGNFG+ D AAA RYTE Sbjct: 73 SARPVSDTMGNYHPHGDSAIYDTLVRMAQPWAMRYPLVDGQGNFGSRGNDGAAAMRYTEC 132 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 R+T +A +L+ +D + VDF Y+ + EPVV PS+ PN+L NG++GIAVGMAT+IP H Sbjct: 133 RLTPLAMEMLREIDHETVDFIPNYDGKTQEPVVLPSRVPNMLMNGSNGIAVGMATNIPPH 192 Query: 195 NVQEICEAALALIDN----PEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250 N+ E+ EA +DN E ++ +E I GPDFPT G+IV + + I ++Y GRG Sbjct: 193 NLTELAEAIYWALDNHDADEETTLAACMERIKGPDFPTAGLIVGT-QGIHDAYTTGRGSI 251 Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV- 309 ++R +EE RG IV+TE+PYQV I IAE + +I + DI DES++ V Sbjct: 252 KMRGVVEIEEDNRGRTTIVITELPYQVNTDNFINAIAEQVKDGKIAGIADIHDESSDRVG 311 Query: 310 -RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368 RIV+ K R +++ +++ + ++T F NM + G VP+ + LD +++ ++ H+ Sbjct: 312 LRIVVTVK-RDAVAKVVLNNLYKHTQLQTSFGANMLSIVDG-VPRTLRLDQMIRLYVNHQ 369 Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTE 425 +V+ RR+ + ++ + R IL+GL+ A +DE+IA+IR N D + ++ + E Sbjct: 370 LDVIIRRTRYLLRKAEERAHILRGLVKALDALDEVIALIRRSANTDTARTGLMELLDIDE 429 Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485 Q AIL+++LR L LE +I +L + AE +L+ ++Q + E+ E+ E Sbjct: 430 IQATAILDMQLRRLSALERQKIIDDLARIEAEIADYKDILDKPERQRAIVRDELAEIVEK 489 Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHS 537 + RRT ++ AD + +I +E + V I+ G+ RS K Sbjct: 490 YGDE-----RRT---QIVSADGDVADEDLIAREDVVVTITETGYAKRTKTDLYRSQKRGG 541 Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGN 579 + K+ D +K T D +L + G KAY LP N Sbjct: 542 KGVQGAGLKQDDIVKHFFVTSTHDWLLFFTNKGRVYRAKAYELPEAN 588 >gi|224476483|ref|YP_002634089.1| DNA topoisomerase IV subunit A [Staphylococcus carnosus subsp. carnosus TM300] gi|222421090|emb|CAL27904.1| topoisomerase IV subunit A [Staphylococcus carnosus subsp. carnosus TM300] Length = 808 Score = 365 bits (938), Expect = 1e-98, Method: Compositional matrix adjust. Identities = 227/700 (32%), Positives = 399/700 (57%), Gaps = 28/700 (4%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 E ++ +SL + +R+ Y+ I+ERA+PD+RDG KPV RRI++AM + G + F+K Sbjct: 3 EIIQDLSLEDVIGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYDSGNTYDKNFRK 62 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 SA+ VG+VIG+ HPHGD SVYD++VRL+Q + R+ LI GN G+ID D AA RYTEA Sbjct: 63 SAKTVGDVIGQYHPHGDSSVYDAMVRLSQEWKLRHVLIEMHGNNGSIDNDPPAAMRYTEA 122 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 ++++++E +L+ +++D V F Y++ +EP+V P++FPNLL NG++GI+ G AT IP H Sbjct: 123 KLSRLSEELLRDINKDTVPFVPNYDDTTTEPMVLPARFPNLLINGSTGISAGYATDIPPH 182 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 N+ E+ +A L IDNP+IS+ +L++Y+ GPDFPT G I++ + I ++Y G+G VR+ Sbjct: 183 NLGEVIQATLKYIDNPDISVSQLMKYVKGPDFPT-GGIIQGIDGIKKAYETGKGRIVVRS 241 Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314 E + G ++VTEIPY+V KS L++KI EL KR+ + ++RDE+ + Sbjct: 242 TVETETLRSGRQELIVTEIPYEVNKSALVKKIDELRADKRVDGIVEVRDETDRTGLRIAI 301 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 + ++ D ++ ++ +D++ + NM +S GR P++M + I+ +L H+ +V+ + Sbjct: 302 ELKKDVNSDAILNFLYKNTDLQISYNFNMVAISDGR-PKLMGIREIIDSYLNHQIDVVTK 360 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAI 431 R+ + + ++R+ I++GL+ A +DE+IAIIR N+ K +V+ F TE Q +AI Sbjct: 361 RTRYDLFHAEKRMHIVEGLMKALSVLDEVIAIIRGSKNKKDAKDNLVAEFDFTEEQAEAI 420 Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491 + L+L L + ++ E L A+ + ++L++ N I E++E++ F K+ Sbjct: 421 VTLQLYRLTNTDIVALEKEHGELEAKINDLRNILDNHDALLNVIKDELKEIRTRF-KTER 479 Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI-----RSLKSHSVDLSALHFK 546 L R E+ + ++ ++ E + +S G+I RS ++ VD L K Sbjct: 480 LSRIEAEIAEIKIS-----KEVIVPSEETILSLSRDGYIKRTSVRSFNANRVDEVGL--K 532 Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVT 604 EGD+L L +T L+ + G+ LP L + + G+ I L+ + +++ ++ Sbjct: 533 EGDALLSHLETNTQHIALVFTNKGRYLYLPVHKLPDVKWKDLGQHISQLVPIENDEYVLD 592 Query: 605 AFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTF--LKVSSEEKMKLVVKVTGD 659 F + ++++K E E+ TR K +K+ +++ V+++ D Sbjct: 593 VFTEPDFKQNAD-YIMATKNGMIKKSELELFKTTRFNKPLIAMKLKDNDELINVMRIEAD 651 Query: 660 H-VAVVGENRKLLIFSIDQIPEMS-RGKGVRLQSYKDGGI 697 + +V L +S D++ R GV+ + KD + Sbjct: 652 QLITIVTHTGMSLTYSTDELSSTGLRAAGVKSINLKDDDV 691 >gi|312867719|ref|ZP_07727925.1| DNA topoisomerase IV, A subunit [Streptococcus parasanguinis F0405] gi|311096782|gb|EFQ55020.1| DNA topoisomerase IV, A subunit [Streptococcus parasanguinis F0405] Length = 835 Score = 365 bits (938), Expect = 1e-98, Method: Compositional matrix adjust. Identities = 214/696 (30%), Positives = 392/696 (56%), Gaps = 24/696 (3%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 N++ +SL + ER+ Y+ I+ERA+PD+RDG KPV RRI+++M++ G ++KS Sbjct: 21 NIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNKDGNTHDKGYRKS 80 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 A+ VG ++G HPHGD S+YD++VR++Q + R L+ GN G++DGD AA RYTEAR Sbjct: 81 AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 140 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 ++++A +LQ ++++ V F +++ + EP V P+ FPNLL NG +GI+ G AT IP HN Sbjct: 141 LSEIAGYLLQDIEKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGATGISAGYATDIPPHN 200 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 + E+ +A + +ID+P ++KL+E++ GPDFPTG II + R+ I ++Y G+G VR++ Sbjct: 201 LAEVIDAVVYMIDHPSAKVDKLMEFLPGPDFPTGAII-QGRDEIKKAYETGKGRVVVRSK 259 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315 +E++ G IVVTEIPY++ K+ L++KI ++ + ++ + ++RDES D + Sbjct: 260 TEIEQLKGGKQQIVVTEIPYEINKAVLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 319 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 + + DL++ +F +D++ + NM + P+ + + IL ++AHRR+++ R Sbjct: 320 LKKDANADLILNYLFKYTDLQVNYNFNMVAID-NYTPRQVGIVPILSSYIAHRRDIIVAR 378 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432 S F + +RR+ I++GL+ +DE+IA+IR N+ K + + TE Q +AI+ Sbjct: 379 SRFDKEKAERRLHIVEGLIRVISILDEVIALIRASDNKADAKENLKVSYDFTEEQAEAIV 438 Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492 L+L L + ++ E +L + + +++ + +N + E+REVK++F Sbjct: 439 TLQLYRLTNTDIVTLEEEHASLKEQIATLAAIIGDERTMFNLMKKELREVKKLFGNP--- 495 Query: 493 GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FKEGD 549 RR+ + ++ + ++E+E V ++ G+I+ S + S + ++ D Sbjct: 496 --RRSELQDTAKTIEIDTASLIVEEETF-VSVTRAGYIKRTSPRSFNASTVEEVGKRDDD 552 Query: 550 SLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIVTAF 606 L A TT +LL + G A P L + GE + Q L + ++I+ A Sbjct: 553 ELIFVEPAKTTQHLLLFTNFGNAIYRPIHELTDTKWKDIGEHLSQTLTNFEQEEEILFAE 612 Query: 607 VYDS--TCKLLVVSSKGNAFIVEESEIIA-NTRKGKT--FLKVSSE-EKMKLVVKVTGDH 660 + D + +G E E+ T + K+ + K+ + +++ V V + Sbjct: 613 IVDQFEGVTYFAATQQGQIKRFERKELSPWRTYRSKSTKYAKLKDQDDRIVAVAPVVLED 672 Query: 661 VAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDG 695 + ++ +N L F+++++P + ++ GV+ + KDG Sbjct: 673 IMIITKNGYGLRFNVEEVPVVGAKAAGVKAINLKDG 708 >gi|257887680|ref|ZP_05667333.1| DNA topoisomerase IV subunit A [Enterococcus faecium 1,141,733] gi|257823734|gb|EEV50666.1| DNA topoisomerase IV subunit A [Enterococcus faecium 1,141,733] Length = 817 Score = 365 bits (938), Expect = 1e-98, Method: Compositional matrix adjust. Identities = 221/707 (31%), Positives = 405/707 (57%), Gaps = 40/707 (5%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 + V+ ++L + +R+ Y+ I+ERA+PD+RDG KPV RRI+ AM++ G + F+K Sbjct: 6 QEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFAMNKDGNTYDKGFRK 65 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 SA+ VG ++G HPHGD S+Y+++VR++Q + R LI GN G++DGD AA RYTEA Sbjct: 66 SAKSVGNIMGNYHPHGDSSIYEAMVRMSQDWKLREVLIEMHGNNGSMDGDPPAAMRYTEA 125 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 R+++++ +L ++++ VD +++ + EP V P+++PNLL NG++GI+ G AT IP+H Sbjct: 126 RLSKLSGEMLADIEKETVDLVWNFDDTEKEPTVLPARYPNLLVNGSTGISAGYATEIPTH 185 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 N+ E+ + + +ID+P+ S+EKL+EYI GPDFPTGGI+ + ++ I ++Y GRG +R+ Sbjct: 186 NLAEVIDGTIYMIDHPQASLEKLMEYIPGPDFPTGGIL-QGKDEIKKAYETGRGKVILRS 244 Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314 + +E + IV+TEIPY+V K+ L++K+ E+ + K+I + ++RDES ++ Sbjct: 245 KTKIEAMKGNKQQIVITEIPYEVNKATLVKKMDEIRLNKKIDGIAEVRDESDRTGLQIVV 304 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 + + ++ +F ++++ + NM + P + L IL+ ++ HR++V+ + Sbjct: 305 ELKKDANAQGILNYLFKNTELQINYNFNMVAIDH-MTPHQVGLKDILRSYIEHRKQVITK 363 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDK--PKPVMVSRFSLTENQVDAI 431 RS F + +R I++GL+ A +DE+IA IR ++DK K +V F TE Q +AI Sbjct: 364 RSQFDLAKAQKRQHIVEGLMKALSILDEVIATIRESKDKKDAKKNLVDVFQFTEEQAEAI 423 Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491 + L+L L + +++ E +NL+A+ +++ +L++ K+ ++ + E+REVK+ +S + Sbjct: 424 VTLQLYRLTNTDITELQKESENLIAQITELNKILSNDKELFSVMKKELREVKKNYSSA-- 481 Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSVDL-SALHFKEG 548 R T E+ T Q ++ +E + V ++ G+++ SL+S+S + +EG Sbjct: 482 --RLTTIQDEIEEIKIDT--QVLVAQEDVIVSVTREGYVKRTSLRSYSASKPEEIGMREG 537 Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAI-QLLIDLNHNQDIVTA 605 D L + T D +LL++ P L L + GE I Q + +L+ ++ I+ Sbjct: 538 DYLLYSGELSTLDHVLLITNKANVIYRPVHELPDLKWKDAGEHISQTISNLSVDESILAV 597 Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG-----KTF-------LKVSSEEKMKLV 653 F Y + ++ + ++ +I TR +T+ +K+ +EE + Sbjct: 598 FPYQK------IQAEKTFVFISKNGLIKQTRMTEFEPWRTYKSRPLSCMKLKAEEDELIA 651 Query: 654 VKVTGDH----VAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDG 695 V + D V +V L + + +P + ++ GV+ + KDG Sbjct: 652 VYLKEDQPGLDVFLVTHQGMGLRYPLTDVPVVGAKAAGVKSMNLKDG 698 >gi|149923365|ref|ZP_01911772.1| DNA gyrase, A subunit [Plesiocystis pacifica SIR-1] gi|149815779|gb|EDM75303.1| DNA gyrase, A subunit [Plesiocystis pacifica SIR-1] Length = 898 Score = 365 bits (938), Expect = 1e-98, Method: Compositional matrix adjust. Identities = 248/742 (33%), Positives = 390/742 (52%), Gaps = 70/742 (9%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 E+ +++ + +L YA+S I RA+PD+RDG KPVHRRI++AM ++ A+KK Sbjct: 3 ESKSTLNIEDEMRSSFLDYAMSVIISRALPDVRDGLKPVHRRILYAMHQLKNTHTQAYKK 62 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 SAR+VG+VIGK HPHGD +VYD+LVRLAQ F RYPL+ GQGNFG+IDGDS AA RYTE Sbjct: 63 SARVVGDVIGKYHPHGDSAVYDALVRLAQDFAMRYPLVDGQGNFGSIDGDSPAAMRYTEV 122 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 RM ++A +L +++ VD+ Y+E++ EP V P+K PNLL NG GIAVGMAT+IP H Sbjct: 123 RMQKLASELLADLEKQTVDWVPNYDEKELEPGVLPTKVPNLLLNGAVGIAVGMATNIPPH 182 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 N+ E+ +A++ALID+P I + +L Y+ GPDFPTGG+I+ + I +Y GRG +VRA Sbjct: 183 NLTELLDASIALIDDPSIGVAELCSYVKGPDFPTGGVILGT-AGIRSAYLTGRGSVKVRA 241 Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314 R +EE +G I+VTEIPYQV K+RLIE+IA L+ K++ + DI+D S + Sbjct: 242 RCEIEEDKKGRESIIVTEIPYQVNKTRLIERIAGLVRDKKLEGISDIQDYSDRTGMRIWI 301 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 + +++ ++ +SD++T F +NM + GR P+V+ L+ L+ ++ HRR V+ R Sbjct: 302 QVKKDHAAQIVLNKLYKMSDLQTSFGVNMIAIVNGR-PEVLNLEKCLRHFIDHRRTVVTR 360 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSR----------- 420 R + + R EI++GL +A +ID +I +IR + D+ K +++ Sbjct: 361 RCRYELAKAMARREIVEGLGVAVDSIDRVIELIRGSKDPDEAKAKLMAEPLDGFAKFLER 420 Query: 421 ---------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLL 465 + L E Q AIL++RL+ L LE +++ E L +++S+L Sbjct: 421 CERPAEEIEKANQGPYRLNERQAKAILDMRLQRLTGLERDKVEGEYRELCEIIGELESIL 480 Query: 466 NSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQA---------MIE 516 + I E+ ++ + GR E S+ + T A ++ Sbjct: 481 TDPDKLMAVIREELLAIR--YEYGDPEGRDSGDGAEGSKGSRRTELMADELEIQPIDLVA 538 Query: 517 KEPITVVISNRGWIRSLKSH--------SVDLSALHFKEGDSLKIALHAHTTDRILLLST 568 E + V+I+ + +++ L + V L + ++ D I L + +LL T Sbjct: 539 DESMVVMITAQSYVKRLPTDEYRVQNRGGVGLKSGSRRDDDDQIIELFEASAHAFVLLFT 598 Query: 569 DG------KAYTLPAGNLLSGRGH-GEAIQLLIDLNHNQDIVTAFVY-----DSTCKLLV 616 + + + P G RG +A+ +DL + I+ Y D +++ Sbjct: 599 NTGRVFRKRVFEFPLGT----RGQRPKALVNFLDLKEGEQILEMVAYREEEVDDDHFVVL 654 Query: 617 VSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSID 676 S +G SE N R E M + K+T ++ +R+ D Sbjct: 655 ASRQGYIKRTSLSE-FQNIRSSGLIAANVVEGDMLIDAKLTNGGCDIIMASREGQAIRFD 713 Query: 677 QI---PEMSRGKGVRLQSYKDG 695 + P +GVR +DG Sbjct: 714 EADVRPMGRTARGVRGMGLRDG 735 >gi|184201078|ref|YP_001855285.1| DNA topoisomerase IV subunit A [Kocuria rhizophila DC2201] gi|183581308|dbj|BAG29779.1| DNA gyrase subunit A [Kocuria rhizophila DC2201] Length = 851 Score = 365 bits (938), Expect = 1e-98, Method: Compositional matrix adjust. Identities = 216/574 (37%), Positives = 323/574 (56%), Gaps = 27/574 (4%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 E++ V + +E +L Y+ S I RA+PD RDG KPV RRI+ M +MGL K Sbjct: 21 EHIVDVDVTQEMETSFLEYSYSVIYSRALPDARDGLKPVQRRILFMMDQMGLRPDRGHVK 80 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 SAR+VGEV+GKLHPHGD ++YD++VR+AQ F R PL+ G GNFG++D D AA RYTEA Sbjct: 81 SARVVGEVMGKLHPHGDAAIYDAMVRMAQSFAMRVPLVDGHGNFGSLD-DGPAAPRYTEA 139 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 RM A + +DED VDF Y+ + +P V P+ +PNLL NG +GIAVGMAT++ H Sbjct: 140 RMAPAARTLTGDLDEDVVDFVPNYDNQFQQPAVLPAAYPNLLVNGATGIAVGMATNMAPH 199 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 N++E+ A L+ NPE ++E+L++ I GPD P+GG IV E I ++YR GRG FR RA Sbjct: 200 NMREVAAGARHLVLNPEATLEELMKLIPGPDLPSGGRIV-GLEGIRDAYRTGRGSFRTRA 258 Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD--ESAEDVRIV 312 VE+V IVVTE+PY V ++ EKI + + AK++ + D+ D + +R+V Sbjct: 259 TVSVEQVSPRKQGIVVTELPYMVGPEKITEKIKDAVQAKKLTGISDVVDLTDRTNGLRLV 318 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 + KN +P ++ ++ + +E F +N L G+ P+ M L +L+ + HR V+ Sbjct: 319 IEVKN-GFNPQAVLAQLYRHTPLEESFGINNVALVDGQ-PRTMGLLELLRVYTDHRIAVV 376 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVD 429 RR++FR+ R+ +++GLLIA L+IDE+I IIR ++ +++ F L+ Q + Sbjct: 377 RRRTAFRLAKRQDRLHLVEGLLIAILDIDEVIQIIRGSEETAEARDRLIAVFDLSRAQAE 436 Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489 IL LRLR L K ++++E D L E +++++L S +A E+ E + F Sbjct: 437 HILELRLRQLTKFSRIELEAERDQLQKEIAELEAILGSETTLRGVVADELSETAQKFGDE 496 Query: 490 TDLGRRRTTFCEVSRADKATLQQA-----------MIEKEPITVVISNRGWI-RSLKSHS 537 RRT E T Q I +P V +S G I RS Sbjct: 497 -----RRTVLLEAEDLPAVTAAQTGGKKAATSVALEISDDPCWVFLSTTGRIARSATRRP 551 Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDGK 571 + + FK D+L + A I +++ G+ Sbjct: 552 LADGSRRFKH-DALTSVVPATARGEIAAVTSTGR 584 >gi|333023996|ref|ZP_08452060.1| putative DNA topoisomerase IV subunit A [Streptomyces sp. Tu6071] gi|332743848|gb|EGJ74289.1| putative DNA topoisomerase IV subunit A [Streptomyces sp. Tu6071] Length = 822 Score = 365 bits (938), Expect = 1e-98, Method: Compositional matrix adjust. Identities = 240/716 (33%), Positives = 383/716 (53%), Gaps = 48/716 (6%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 EE + + + ++ YL YA S I RA+PD RDG KPV RRI++ M+EMGL + Sbjct: 22 EERILDIDVVDEMQSSYLEYAYSVIYSRALPDARDGLKPVQRRIVYQMNEMGLRPERGYV 81 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYT 132 K AR+VGEV+GKLHPHGD S+YD+LVR+AQ F R PL+ G GNFG++ + D AA RYT Sbjct: 82 KCARVVGEVMGKLHPHGDASIYDALVRMAQSFSMRVPLVDGHGNFGSLGNDDPPAAMRYT 141 Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192 E+RM A L+ +DE+ VDF Y+ ++ EP+ P+ +PNLL NG SGIAVGMAT++ Sbjct: 142 ESRMADAAMLMTDSIDENTVDFAPNYDGQEQEPLTLPAAYPNLLVNGASGIAVGMATNMA 201 Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252 HN+ E+ AA LI +P ++ L++Y+ GPD PTGG IV I ++Y GRG F+ Sbjct: 202 PHNLGEVVAAARHLIRHPNADLDTLMKYVPGPDLPTGGRIV-GLAGIRDAYANGRGSFKT 260 Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD--ESAEDVR 310 RA VE V +VVTE+P+ V ++I KI +L+ AK++ + D++D + +R Sbjct: 261 RASVTVENVTARRKGLVVTELPFTVGPEKVIAKIKDLVGAKKLQGIADVKDLTDREHGLR 320 Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370 +V+ KN P+ ++E ++ L+ ME F +N L G+ P + L +L+ +L HR Sbjct: 321 LVIEIKN-GFVPEAVLEQLYKLTPMEESFGINNVALVDGQ-PLTLGLKEMLEVYLDHRFS 378 Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQ 427 V+ RRS FR R+ +++GLL+A ++IDE+I +IR N + K ++ FSL+E Q Sbjct: 379 VVRRRSEFRRTKRMNRLHLVEGLLVALVDIDEVIRLIRSSENSAEAKQRLIEHFSLSETQ 438 Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487 IL+ LR L + + +++SE D L AE E++ ++L S + ++ E+ V + + Sbjct: 439 TQYILDTPLRRLTRFDRIELESERDRLNAEIEELTAILESDTELRKLVSGELAAVAKKYG 498 Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI-RSLKSHSVDLSALHFK 546 RRT E + A + + +P V++S+ G I R+ + + + Sbjct: 499 TP-----RRTVLLESADTPVAAI-PLQVADDPCRVLLSSTGVIARTPGTEPLQEGSAKRA 552 Query: 547 EGDSLKIALHAHTTDRILLLSTDGK-----AYTLP-----AGNLLSGRGHGEAIQLLIDL 596 + D ++ A+ A + +++ G+ LP AG L G G + + L Sbjct: 553 KHDVIRSAVPATARGEVGAVTSAGRLLRITVVDLPQLAEGAGPALVG---GAPVAEFVRL 609 Query: 597 NHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV 656 ++ +V D + L + + + AN E+++++ Sbjct: 610 EGDETLVCLCTLDESSPGLAIGTAQGVVKRVVPDYPAN------------REELEVITLR 657 Query: 657 TGDHVAVVGENR---KLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEG 708 GD + E R + L+F D + + VR Q GG++ V K+ +G Sbjct: 658 EGDRIVGAAELRTGEEDLVFITDDAQLLRFQASAVRPQGRPAGGVAGV---KLADG 710 >gi|73916852|gb|AAZ93294.1| topoisomerase IV subunit A [Streptococcus pneumoniae] Length = 821 Score = 365 bits (938), Expect = 1e-98, Method: Compositional matrix adjust. Identities = 222/709 (31%), Positives = 399/709 (56%), Gaps = 33/709 (4%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 N++ +SL + ER+ Y+ I++RA+PD+RDG KPV RRI+++M++ F +++KS Sbjct: 1 NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 60 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 A+ VG ++G HPHGD S+Y+++VR++Q + R L+ GN G++DGD AA RYTEAR Sbjct: 61 AKSVGNIMGNFHPHGDSSIYNAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 120 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 ++++A +LQ ++++ V F +++ + EP V P+ FPNLL NG++GI+ G AT IP HN Sbjct: 121 LSEIAGYLLQDIEKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 180 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 + E+ +AA+ +ID+P I+KL+E++ GPDFPTG II + R+ I ++Y G+G VR++ Sbjct: 181 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAII-QGRDEIKKAYETGKGRVVVRSK 239 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315 +E++ G IV+TEIPY++ K+ L++KI ++ + ++ + ++RDES D + Sbjct: 240 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 299 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 + + +L++ +F +D++ + NM + P+ + + IL ++AHRREV+ R Sbjct: 300 LKKDANTELVLNYLFKYTDLQINYNFNMVAID-NFTPRQVGIVPILSSYIAHRREVILAR 358 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432 S F + ++R+ I++GL+ +DE+IA+IR N+ K + + TE Q +AI+ Sbjct: 359 SRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIV 418 Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492 L+L L + ++ E L + + +++ + +N + E+REVK+ F+ Sbjct: 419 TLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP--- 475 Query: 493 GRRRTTFCEVSRA---DKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FK 546 R ++ + ++A D A+L I +E V ++ G+I+ S S L + Sbjct: 476 --RLSSLEDTAKAIEIDTASL----IAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKR 529 Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIV 603 + D L A TT +L+ ++ G P L R GE + Q + + N++I+ Sbjct: 530 DDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEIL 589 Query: 604 TAFV---YDSTCKLLVVSSKGNAFIVEESEIIA-NTRKGKT--FLKVSSE-EKMKLVVKV 656 V +D V+ G VE E T + K+ + K+ + +++ V + Sbjct: 590 YVEVLDQFDDATTYFAVTRLGQIKRVERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPI 649 Query: 657 TGDHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDGGI--SDVIC 702 D V +V +N L F+I+++P + ++ GV+ + K+ + S IC Sbjct: 650 KLDDVVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSGFIC 698 >gi|73916890|gb|AAZ93313.1| topoisomerase IV subunit A [Streptococcus pneumoniae] Length = 821 Score = 365 bits (938), Expect = 1e-98, Method: Compositional matrix adjust. Identities = 222/709 (31%), Positives = 399/709 (56%), Gaps = 33/709 (4%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 N++ +SL + ER+ Y+ I++RA+PD+RDG KPV RRI+++M++ F +++KS Sbjct: 1 NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 60 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 A+ VG ++G HPHG+ S+YD++VR++Q + R L+ GN G++DGD AA RYTEAR Sbjct: 61 AKSVGNIMGNFHPHGNSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 120 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 ++++A +LQ ++++ V F +++ + EP V P+ FPNLL NG++GI+ G AT IP HN Sbjct: 121 LSEIAGYLLQDIEKNTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 180 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 + E+ +AA+ +ID+P I+KL+E++ GPDFPTG II + R+ I ++Y G+G VR++ Sbjct: 181 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAII-QGRDEIKKAYETGKGRVVVRSK 239 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315 +E++ G IV+TEIPY++ K+ L++KI ++ + ++ + ++RDES D + Sbjct: 240 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 299 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 + + +L++ +F +D++ + NM + P+ + + IL ++AHRREV+ R Sbjct: 300 LKKDANTELVLNYLFKYTDLQINYNFNMVAID-NFTPRQVGIVPILSSYIAHRREVILAR 358 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432 S F + ++R+ I++GL+ +DE+IA+IR N+ K + + TE Q +AI+ Sbjct: 359 SRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIV 418 Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492 L+L L + ++ E L + + +++ + +N + E+REVK+ F+ Sbjct: 419 TLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP--- 475 Query: 493 GRRRTTFCEVSRA---DKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FK 546 R ++ + ++A D A+L I +E V ++ G+I+ S S L + Sbjct: 476 --RLSSLEDTAKAIEIDTASL----IAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKR 529 Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIV 603 + D L A TT +L+ ++ G P L R GE + Q + + N++I+ Sbjct: 530 DDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEIL 589 Query: 604 TAFV---YDSTCKLLVVSSKGNAFIVEESEIIA-NTRKGKT--FLKVSSE-EKMKLVVKV 656 V +D V+ G VE E T + K+ + K+ + +++ V + Sbjct: 590 YVEVLDQFDDATTYFAVTRLGQIKRVERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPI 649 Query: 657 TGDHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDGGI--SDVIC 702 D V +V +N L F+I+++P + ++ GV+ + K+ + S IC Sbjct: 650 KLDDVVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSGFIC 698 >gi|183603806|ref|ZP_02721447.2| DNA topoisomerase IV, A subunit [Streptococcus pneumoniae MLV-016] gi|183578628|gb|EDT99156.1| DNA topoisomerase IV, A subunit [Streptococcus pneumoniae MLV-016] Length = 826 Score = 365 bits (938), Expect = 1e-98, Method: Compositional matrix adjust. Identities = 223/709 (31%), Positives = 398/709 (56%), Gaps = 33/709 (4%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 N++ +SL + ER+ Y+ I++RA+PD+RDG KPV RRI+++M++ F +++KS Sbjct: 6 NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 65 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 A+ VG ++G HPHGD S+YD++VR++Q + R L+ GN G++DGD AA RYTEAR Sbjct: 66 AKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 125 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 ++++A +LQ +++ V F +++ + EP V P+ FPNLL NG++GI+ G AT IP HN Sbjct: 126 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 185 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 + E+ +AA+ +ID+P I+KL+E++ GPDFPTG II + R+ I ++Y G+G VR++ Sbjct: 186 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAII-QGRDEIKKAYETGKGRVVVRSK 244 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315 +E++ G IV+TEIPY++ K+ L++KI ++ + ++ + ++RDES D + Sbjct: 245 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 304 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 + + +L++ +F +D++ + NM + P+ + + IL ++AHRREV+ R Sbjct: 305 LKKDANTELVLNYLFKYTDLQINYNFNMVAID-NFTPRQVGIVPILSSYIAHRREVILAR 363 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432 S F + ++R+ I++GL+ +DE+IA+IR N+ K + + TE Q +AI+ Sbjct: 364 SRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIV 423 Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492 L+L L + ++ E L + + +++ + +N + E+REVK+ F+ Sbjct: 424 TLQLYRLTNTDVVVLQEEEAELREKIAMLVAIIGDERTMYNLMKKELREVKKKFATP--- 480 Query: 493 GRRRTTFCEVSRA---DKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FK 546 R ++ + ++A D A+L I +E V ++ G+I+ S S L + Sbjct: 481 --RLSSLEDTAKAIEIDTASL----IAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKR 534 Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIV 603 + D L A TT +L+ ++ G P L R GE + Q + + N++I+ Sbjct: 535 DDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEIL 594 Query: 604 TAFV---YDSTCKLLVVSSKGNAFIVEESEIIA-NTRKGKT--FLKVSSE-EKMKLVVKV 656 V +D V+ G VE E T + K+ + K+ + +++ V + Sbjct: 595 YVEVLDQFDDATTYFAVTRLGQIKRVERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPI 654 Query: 657 TGDHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDGGI--SDVIC 702 D V +V +N L F+I+++P + ++ GV+ + K+ + S IC Sbjct: 655 KLDDVVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSGFIC 703 >gi|212715651|ref|ZP_03323779.1| hypothetical protein BIFCAT_00551 [Bifidobacterium catenulatum DSM 16992] gi|212661018|gb|EEB21593.1| hypothetical protein BIFCAT_00551 [Bifidobacterium catenulatum DSM 16992] Length = 895 Score = 365 bits (938), Expect = 1e-98, Method: Compositional matrix adjust. Identities = 198/494 (40%), Positives = 298/494 (60%), Gaps = 14/494 (2%) Query: 13 VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72 V+EN+ L + + +L YA S I RA+PD RDG KPV RRII+ M +M L+ + Sbjct: 17 VKENIVETPLNEEMSKSFLEYAYSVIYARALPDARDGLKPVQRRIIYQMGQMNLNPDRPY 76 Query: 73 KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132 KSAR+VGEV+GKLHPHGD ++Y+++VRLAQPF R PL+ G GNFG++D D AA RYT Sbjct: 77 MKSARVVGEVMGKLHPHGDSAIYEAMVRLAQPFAMRLPLVDGHGNFGSLD-DGPAASRYT 135 Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192 EARM Q A + + ED VDF Y+ + EP V P+ PNLL NG SGIAVGMAT++ Sbjct: 136 EARMAQAALGMNANIAEDTVDFTPNYDNKLQEPTVLPAAIPNLLVNGGSGIAVGMATNMA 195 Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252 +HN+ E+ AA L+ +P+ ++E+L+ Y+ GPD+P+GG+IV R+ I E+Y GRG Sbjct: 196 THNLGEVVAAAKYLMHHPDATLEELMRYVPGPDWPSGGVIV-GRKGIREAYETGRGALTT 254 Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD--ESAEDVR 310 R+ +E V IVVTE+P+ V R++E+I+E + +++ + D + R Sbjct: 255 RSVTHIENVTARKKAIVVTELPFMVGPERVLERISEGVKNRKLEGISGAIDLTDRHNGTR 314 Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370 +V+ K DP+ ++ +F + ++ F +N L GR P M L +L+ W+ HRR Sbjct: 315 LVIEIKT-GFDPNAVLAQLFKHTPLQDNFTINNVALVNGR-PHTMGLKEMLQVWVNHRRV 372 Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQ 427 V+ RRS FR + R+ +++GLL+A ++IDE+I +IR+ D K ++ F L E Q Sbjct: 373 VIRRRSEFRKKKALERLHLVEGLLLAMVDIDEVIQVIRSSDDAEAAKTKLIKVFDLDEIQ 432 Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487 IL+LRLR L K+ ++++E D+L E++D +L S + + + E+ E + Sbjct: 433 AQYILDLRLRRLTKMSRIELEAERDDLKQRIEELDRILASAEALDDVVIAEMDEAVATYG 492 Query: 488 KSTDLGRRRTTFCE 501 RRT + Sbjct: 493 TP-----RRTVLLD 501 >gi|224283957|ref|ZP_03647279.1| DNA gyrase subunit A [Bifidobacterium bifidum NCIMB 41171] gi|311063465|ref|YP_003970190.1| GyrA DNA gyrase subunit A [Bifidobacterium bifidum PRL2010] gi|310865784|gb|ADP35153.1| GyrA DNA gyrase subunit A [Bifidobacterium bifidum PRL2010] Length = 910 Score = 365 bits (937), Expect = 1e-98, Method: Compositional matrix adjust. Identities = 227/639 (35%), Positives = 357/639 (55%), Gaps = 40/639 (6%) Query: 7 SNSNTLVEEN-VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMG 65 +N ++++N V ++ + + YL YA+S I ERA+PD+RDG KPVHRRI++AM + G Sbjct: 30 ANEQLVLDDNRVAHTDIQKEMRQSYLDYAISVIVERALPDVRDGMKPVHRRIVYAMYDGG 89 Query: 66 LDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDS 125 + K AR V +V+G HPHGD ++YDSLVR+AQP+ RY L+ GQGNFG+ D Sbjct: 90 YRPDRGYSKCARPVADVMGNYHPHGDAAIYDSLVRMAQPWSMRYTLVDGQGNFGSAGDDP 149 Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185 AA RYTE RM +A +++ +D+D VDF Y+ EP V P++FPNLLANG+SGIAV Sbjct: 150 PAAMRYTECRMMPLAMEMVRDIDKDTVDFVPNYDGRTQEPTVLPARFPNLLANGSSGIAV 209 Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYII----GPDFPTGGIIVESRESIVE 241 GMAT+IP HN++E+ E +D+PE S E+LL +I GPDFPTG I+ + I + Sbjct: 210 GMATNIPPHNMRELAEGVHWTLDHPEASREELLNALIGIIKGPDFPTGATIL-GHKGIEQ 268 Query: 242 SYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDI 301 +YR GRG +RA EE+ +G C+VVTE+PYQV RL I E + +I + D+ Sbjct: 269 AYRTGRGLITMRAVVNTEEI-KGRMCLVVTELPYQVNPDRLAASIREGVRDGKIQGIADM 327 Query: 302 RDESAEDV--RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDG 359 RDE++ R+VL K R P +++ +++ S ++ F NM L G VP+ + LD Sbjct: 328 RDETSGRTGQRLVLVLK-RDAVPKVVLNNLYKHSQLQQTFGANMLALVDG-VPRTLSLDA 385 Query: 360 ILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPV 416 ++ W+ H+ EV+ RR+ + + + R IL+GLL A IDE+I +IR+ + +P Sbjct: 386 FIRHWVNHQLEVIERRTRYLKREAEERDHILQGLLKAMDAIDEVIRLIRSSQGREDARPK 445 Query: 417 MVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIA 476 ++ + + Q DAIL+++L L +E +I E + L+ + + +L ++Q + Sbjct: 446 LMEFLDIDQVQADAILSMQLVRLANMERQKIIDEHEELMRKIADYNDILAKPERQRTIVG 505 Query: 477 CEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSH 536 E+ EI +K D RRT S + +I +E + V +++ G+I+ K++ Sbjct: 506 DEL---DEIVAKYGD--ERRTKILPYSGEMNV---EDLIAEENVVVTVTHSGFIKRTKAN 557 Query: 537 SV--------DLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSG 583 + +E D + T + +L + G KAY LP G+ S Sbjct: 558 EYRAQHRGGKGIKGAKLREDDVVDHFFLTSTHNWLLFFTNKGRVYRIKAYELPEGSRDS- 616 Query: 584 RGHGEAIQLLIDLNHNQDIVTAFVYDS--TCKLLVVSSK 620 G+ + L+ ++ I T + K LV++++ Sbjct: 617 --KGQHVANLLQFGPDETIQTVLSIPNYEVAKYLVLATR 653 >gi|315500828|ref|YP_004079715.1| DNA gyrase, a subunit [Micromonospora sp. L5] gi|315407447|gb|ADU05564.1| DNA gyrase, A subunit [Micromonospora sp. L5] Length = 839 Score = 365 bits (937), Expect = 1e-98, Method: Compositional matrix adjust. Identities = 238/686 (34%), Positives = 374/686 (54%), Gaps = 40/686 (5%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 + ++ V L ++ YL YA+S I RA+PD+RDG KPVHR+I++AM + G + K Sbjct: 25 DRIEPVGLEVEMQRSYLDYAMSVIVGRALPDVRDGLKPVHRKILYAMFDSGYRPDRGYVK 84 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 +R+VG+V+G+ HPHGD ++YD+LVR+AQP+ RYPL+ G GNFG+ D AAA RYTE Sbjct: 85 CSRVVGDVMGQFHPHGDSAIYDALVRMAQPWSLRYPLVDGNGNFGSPGNDPAAAMRYTEC 144 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 ++ +A +L+ +DED VD +D Y+ EP + PS+ PNLL NG+ GIAVGMAT IP H Sbjct: 145 KLDPLAMEMLRDIDEDTVDLQDNYDGRAKEPTILPSRIPNLLINGSEGIAVGMATKIPPH 204 Query: 195 NVQEICEAALALIDNPE----ISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250 N++EI A +++PE ++E LLE + GPDFPT G+IV + I ++YR GRG Sbjct: 205 NLREIGAAVQWCLEHPEADEATTLEALLEIVKGPDFPTHGLIV-GQAGIQDAYRTGRGSI 263 Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA--ED 308 R+RA VEE RG +VV+E+PYQV L E+IAELI ++ + DIRDES+ Sbjct: 264 RMRAVVEVEEDKRGRPALVVSELPYQVNPDNLAERIAELIKEGKLAGIADIRDESSGRTG 323 Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368 +RIVL K R +++ +++ + ++ F NM L G VP+ + L ++ ++ H+ Sbjct: 324 MRIVLVLK-RDAVAKVVLNNLYKHTQLQETFGANMLALVDG-VPRTLNLAQFIRYYVEHQ 381 Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTE 425 EV+ RR++FR++ + R IL+GL A +DE+IA+IR + + ++ + E Sbjct: 382 IEVIRRRTAFRLRKAEERAHILRGLSKALDALDEVIALIRRSPTVEDARQGLIRLLDIDE 441 Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485 Q AIL+++LR L LE +I +L L E + +L ++Q +I E E+ EI Sbjct: 442 VQATAILDMQLRRLAALERQRILDDLAKLEVEIADLKDILAKPERQ-RRIVSE--ELGEI 498 Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHS 537 +K D RRT D + +I +E + V I+ G+ RS + Sbjct: 499 VAKWGD--DRRTKIVPF---DGEVSMEDLIAREDVVVTITRTGYAKRTKVDLYRSQRRGG 553 Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGHGEAIQL 592 +S ++ D + T D IL + G KAY LP + ++ G+ + Sbjct: 554 KGVSGATLRQDDIVSHFFVCSTHDWILFFTNKGRVYRAKAYELPEASRVA---KGQHVAN 610 Query: 593 LIDLNHNQDIVTAFV---YDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEK 649 L+ ++ I Y L++ + G E +N G + + E++ Sbjct: 611 LLAFQPDEQIAQIIEIPNYQVAPYLVLATKNGLVKKTRLEEFDSNRSGGIIAINLRDEDE 670 Query: 650 MKLVVKVTG-DHVAVVGENRKLLIFS 674 + V V D + +V +N + + F+ Sbjct: 671 LVGAVLVAPEDDLLLVSKNAQAIRFN 696 >gi|223984217|ref|ZP_03634365.1| hypothetical protein HOLDEFILI_01658 [Holdemania filiformis DSM 12042] gi|223963832|gb|EEF68196.1| hypothetical protein HOLDEFILI_01658 [Holdemania filiformis DSM 12042] Length = 849 Score = 365 bits (937), Expect = 1e-98, Method: Compositional matrix adjust. Identities = 234/703 (33%), Positives = 391/703 (55%), Gaps = 30/703 (4%) Query: 28 ERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLH 87 ER+ Y+ I+ERA+PD RDG KPV RRI++AM G F +KSA+ VG VIG H Sbjct: 26 ERFGRYSKYIIQERALPDARDGLKPVQRRILYAMFHDGNTFDHQHRKSAKTVGLVIGNYH 85 Query: 88 PHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGV 147 PHGD SVYD++VR++Q + R PLI GN G+ID D AAA RYTEAR+ ++A +L+ + Sbjct: 86 PHGDSSVYDAMVRMSQDWKIRMPLIDMHGNNGSIDDDPAAAMRYTEARLAKIAGTLLEDI 145 Query: 148 DEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALI 207 D+D V F +++ ++EP V P++FP LL NG +GIA G AT+IP HN+ E+ +AA+ + Sbjct: 146 DKDTVLFAPNFDDTENEPTVLPARFPVLLVNGATGIAAGYATNIPPHNLSEVIDAAIYRM 205 Query: 208 DNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWC 267 P+ S+E+L+E + GPDFPTGGI++ ++ IV+++ G+G +RAR E+ G C Sbjct: 206 QRPKCSLEELMEILPGPDFPTGGIVM-GKKGIVDAFTTGKGRVVIRAR---TEIVTGKTC 261 Query: 268 --IVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIVLFPKNRSLDPDL 324 I++ EIPY+V KS ++ K+ ++ +++ I + DIRDE+ +RIV+ K + DP++ Sbjct: 262 NQIIIREIPYEVIKSSMVRKMDDIRLSREIEGIMDIRDETDRTGLRIVIDVK-KDADPNV 320 Query: 325 LMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAID 384 ++ + +D++ + NM V + + P M L G+L ++AHR EV+ RRS + ++ Sbjct: 321 ILNYFYKNTDLQIYYSYNM-VSIVNKRPVQMGLIGMLDAFIAHREEVVLRRSRYLYNKME 379 Query: 385 RRVEILKGLLIAYLNIDEIIAIIR-NEDK--PKPVMVSRFSLTENQVDAILNLRLRSLRK 441 R IL+GL+ A +DE+IA+IR ++DK K + F +E Q +AI+ LRL L Sbjct: 380 ERCHILEGLMKAVSIMDEVIAVIRQSKDKGDAKRNLTESFGFSETQAEAIVTLRLYRLTS 439 Query: 442 LEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCE 501 + ++ E L+ E E + ++L S + + E+RE+K+ ++ RR E Sbjct: 440 TDIVALREEFAQLVNEMEMLKTILESETVLKSVLIKELREIKKEYADP----RRSEIQAE 495 Query: 502 VSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSVDLSALH-FKEGDSLKIALHAH 558 V + AMI E + + S G+++ SL+S+ +A+ KEGD L L Sbjct: 496 VEEI--VIDKTAMIPNERVMITASRDGYVKRVSLRSYGASDNAMTGLKEGDVLVGQLEVD 553 Query: 559 TTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDIVTAFV---YDSTCK 613 T D +LL ++ G LP + + G + + ++ + I+ A V + S Sbjct: 554 TLDTLLLFTSKGNYAHLPVYQIDEAKWKDVGSHLNKYVSIDGDDKIINAIVVKNFSSYAW 613 Query: 614 LLVVSSKGNA--FIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLL 671 ++ VS +G + + ++ N + +E M+ V + + ++ + + Sbjct: 614 IVTVSRRGQVKKTPISQWQVQRNNKMMTAMNLKKDDEMMRAFVVYAHEDLIMISRSGWIS 673 Query: 672 IFSIDQIPEM-SRGKGVR-LQSYKDGGISDVICFKICEGLTWI 712 +S D +P ++ +GV+ L KD ++ + W+ Sbjct: 674 RYSSDLVPANGTKSQGVKALNLAKDDTLAAACSYSDERQSLWV 716 >gi|319942537|ref|ZP_08016847.1| DNA gyrase subunit A [Sutterella wadsworthensis 3_1_45B] gi|319803940|gb|EFW00858.1| DNA gyrase subunit A [Sutterella wadsworthensis 3_1_45B] Length = 970 Score = 365 bits (937), Expect = 1e-98, Method: Compositional matrix adjust. Identities = 248/727 (34%), Positives = 391/727 (53%), Gaps = 71/727 (9%) Query: 20 VSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 VSL + + YL YA+S I RA+PD+RDG KPVHRR+++AM E+G + + KK+AR+V Sbjct: 76 VSLETEMRQSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMKEIGNVWSSPTKKAARVV 135 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 GEV+GK HPHGD + Y ++VR+AQ F RYPLI GQGNFG+IDGDSAAA RYTE ++ ++ Sbjct: 136 GEVLGKFHPHGDSAAYQTIVRMAQDFSMRYPLIYGQGNFGSIDGDSAAAMRYTEVKLMKI 195 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 AE +L + ED VDF ++ + EPVV P++ P LL NG+SGIAVGMAT+IP HN++E Sbjct: 196 AEEMLADLHEDTVDFVPNFDNSEVEPVVLPTRLPELLVNGSSGIAVGMATNIPPHNLRET 255 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 +A + +++P+ S++ L+ I PDFPTGGI+ + E YR GRG +RAR +E Sbjct: 256 IDACVHALEHPDCSVDDLIALISAPDFPTGGIVY-GLSGVYEGYRTGRGRVIMRARTHLE 314 Query: 260 EVGR--GSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKN 317 E GR IVV EIPY V K L E++ EL K++ + ++RDES +RI + K Sbjct: 315 EFGRDHSRTRIVVDEIPYMVNKRVLYERMHELWRDKKLDGISEMRDESTRQIRIAIDLKQ 374 Query: 318 RSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSS 377 ++ P++++ ++F + M+ F +NM L G+ P ++ L ++ +L HRREV+ RR+ Sbjct: 375 GAM-PEVVLNNLFKNTQMQESFGMNMVALVDGQ-PMLLNLKQMVVYFLEHRREVVTRRTI 432 Query: 378 FRMQAIDRRVEILKGLLIAYLNIDEIIAIIRN----EDKPKPVM-----------VSR-- 420 FR++ IL G IA NIDE I +IR E+ + +M ++R Sbjct: 433 FRLKKSRGAGHILAGQAIALANIDEFIRLIRAAKTVEEAQQSLMGRGWPLGFAAEITRRA 492 Query: 421 -----------------------FSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAE 457 + LT+ QVD IL + LR L LE +I L + A Sbjct: 493 AEYGKDADPEGLDPRRGLQPDGLYYLTKVQVDNILAMNLRRLTGLEREKI---LADYAAT 549 Query: 458 KEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRTTFCEVSRADKATLQQAMIEK 517 E+I L++ + ++ I+E E+ + G R + ++S D ++ +I + Sbjct: 550 MERIFDLIDI-LHKPERVTAIIKE--ELLACREAYGDERRSTIDLSE-DTNFNKRDLIPR 605 Query: 518 EPITVVISNRGWIRSLKSHSVDLSALHFK--------EGDSLKIALHAHTTDRILLLSTD 569 + V ++ G+++S + + + K D ++ A+T D IL ST Sbjct: 606 RDMVVSLTRDGFVKSQELADYNAQSRGGKGRNLQATTRDDVIEAFFLANTHDIILCFSTA 665 Query: 570 GKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDIVTAFV-----YDSTCKLLVVSSKGN 622 G+ Y + +L G+ + G I L+ L N+ I +F+ + + + + +G Sbjct: 666 GQVYAIDVFDLPEGKANSRGRPIVNLLPLEENEKI--SFILPIQEFSEDRYMFLATDRGT 723 Query: 623 AFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTGDHVAVVGENRKLLIFSIDQIPEMS 682 S ++ R+G + E+ + + + D V ++ +N + + F I M Sbjct: 724 VRRTPLS-AFSSARRGIRATNLGDEKLVGVTITSGDDDVFLLADNGRCVHFKESTIRVMG 782 Query: 683 R-GKGVR 688 R GVR Sbjct: 783 RTAHGVR 789 >gi|73916848|gb|AAZ93292.1| topoisomerase IV subunit A [Streptococcus pneumoniae] Length = 821 Score = 365 bits (937), Expect = 2e-98, Method: Compositional matrix adjust. Identities = 223/709 (31%), Positives = 398/709 (56%), Gaps = 33/709 (4%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 N++ +SL + ER+ Y+ I++RA+PD+RDG KPV RRI+++M++ F +++KS Sbjct: 1 NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 60 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 A+ VG ++G HPHGD S+YD++VR++Q + R L+ GN G++DGD AA RYTEAR Sbjct: 61 AKSVGNIMGNFHPHGDYSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 120 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 ++++A +LQ +++ V F +++ + EP V P+ FPNLL NG++GI+ G AT IP HN Sbjct: 121 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 180 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 + E+ +AA+ +ID+P I+KL+E++ GPDFPTG II + R+ I ++Y G+G VR++ Sbjct: 181 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAII-QGRDEIKKAYETGKGRVVVRSK 239 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315 +E++ G IV+TEIPY++ K+ L++KI ++ + ++ + ++RDES D + Sbjct: 240 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 299 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 + + +L++ +F +D++ + NM + P+ + + IL ++AHRREV+ R Sbjct: 300 LKKDANTELVLNYLFKYTDLQINYNFNMVAID-NFTPRQVGIVPILSSYIAHRREVILAR 358 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432 S F + ++R+ I++GL+ +DE+IA+IR N+ K + + TE Q +AI+ Sbjct: 359 SRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIV 418 Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492 L+L L + ++ E L + + +++ + +N + E+REVK+ F+ Sbjct: 419 TLQLYRLTNTDVVVLQEEEAELREKIAMLVAIIGDERTMYNLMKKELREVKKKFATP--- 475 Query: 493 GRRRTTFCEVSRA---DKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FK 546 R ++ + ++A D A+L I +E V ++ G+I+ S S L + Sbjct: 476 --RLSSLEDTAKAIEIDTASL----IAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKR 529 Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIV 603 + D L A TT +L+ ++ G P L R GE + Q + + N++I+ Sbjct: 530 DDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEIL 589 Query: 604 TAFV---YDSTCKLLVVSSKGNAFIVEESEIIA-NTRKGKT--FLKVSSE-EKMKLVVKV 656 V +D V+ G VE E T + K+ + K+ + +++ V + Sbjct: 590 YVEVLDQFDDATTYFAVTRLGQIKRVERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPI 649 Query: 657 TGDHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDGGI--SDVIC 702 D V +V +N L F+I+++P + ++ GV+ + K+ + S IC Sbjct: 650 KLDDVVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSGFIC 698 >gi|73916846|gb|AAZ93291.1| topoisomerase IV subunit A [Streptococcus pneumoniae] Length = 821 Score = 365 bits (937), Expect = 2e-98, Method: Compositional matrix adjust. Identities = 223/709 (31%), Positives = 398/709 (56%), Gaps = 33/709 (4%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 N++ +SL + ER+ Y+ I++RA+PD+RDG KPV RRI+++M++ F +++KS Sbjct: 1 NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 60 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 A+ VG ++G HPHGD S+YD++VR++Q + R L+ GN G++DGD AA RYTEAR Sbjct: 61 AKSVGNIMGNFHPHGDFSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 120 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 ++++A +LQ +++ V F +++ + EP V P+ FPNLL NG++GI+ G AT IP HN Sbjct: 121 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 180 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 + E+ +AA+ +ID+P I+KL+E++ GPDFPTG II + R+ I ++Y G+G VR++ Sbjct: 181 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAII-QGRDEIKKAYETGKGRVVVRSK 239 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315 +E++ G IV+TEIPY++ K+ L++KI ++ + ++ + ++RDES D + Sbjct: 240 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 299 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 + + +L++ +F +D++ + NM + P+ + + IL ++AHRREV+ R Sbjct: 300 LKKDANTELVLNYLFKYTDLQINYNFNMVAID-NFTPRQVGIVPILSSYIAHRREVILAR 358 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432 S F + ++R+ I++GL+ +DE+IA+IR N+ K + + TE Q +AI+ Sbjct: 359 SRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIV 418 Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492 L+L L + ++ E L + + +++ + +N + E+REVK+ F+ Sbjct: 419 TLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP--- 475 Query: 493 GRRRTTFCEVSRA---DKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FK 546 R ++ + ++A D A+L I +E V ++ G+I+ S S L + Sbjct: 476 --RLSSLEDTAKAIEIDTASL----IAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKR 529 Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIV 603 + D L A TT +L+ ++ G P L R GE + Q + + N++I+ Sbjct: 530 DDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEIL 589 Query: 604 TAFV---YDSTCKLLVVSSKGNAFIVEESEIIA-NTRKGKT--FLKVSSE-EKMKLVVKV 656 V +D V+ G VE E T + K+ + K+ + +++ V + Sbjct: 590 YVEVLDQFDDATTYFAVTRLGQIKRVERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPI 649 Query: 657 TGDHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDGGI--SDVIC 702 D V +V +N L F+I+++P + ++ GV+ + K+ + S IC Sbjct: 650 KLDDVVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSGFIC 698 >gi|330464884|ref|YP_004402627.1| DNA gyrase subunit A [Verrucosispora maris AB-18-032] gi|328807855|gb|AEB42027.1| DNA gyrase subunit A [Verrucosispora maris AB-18-032] Length = 839 Score = 365 bits (937), Expect = 2e-98, Method: Compositional matrix adjust. Identities = 223/594 (37%), Positives = 339/594 (57%), Gaps = 33/594 (5%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 + ++ V L ++ YL YA+S I RA+PD+RDG KPVHR+I++AM + G + K Sbjct: 25 DRIEPVGLEVEMQRSYLDYAMSVIVGRALPDVRDGLKPVHRKILYAMFDSGYRPDRGYVK 84 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 +R+VG+V+G+ HPHGD ++YD+LVR+AQP+ RYPL+ G GNFG+ D AAA RYTE Sbjct: 85 CSRVVGDVMGQFHPHGDSAIYDALVRMAQPWSLRYPLVDGNGNFGSPGNDPAAAMRYTEC 144 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 ++ +A +L+ +DED VD +D Y+ EP + PS+ PNLL NG+ GIAVGMAT IP H Sbjct: 145 KLDPLAMEMLRDIDEDTVDLQDNYDGRAKEPTILPSRIPNLLINGSEGIAVGMATKIPPH 204 Query: 195 NVQEICEAALALIDNPE----ISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250 N++EI A +++PE ++E LLE + GPDFPT G+IV + I ++YR GRG Sbjct: 205 NLREIGAAVQWCLEHPEADEATTLEALLEIVKGPDFPTHGLIV-GQSGIQDAYRTGRGSI 263 Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESA--ED 308 R+RA VEE RG +VV+E+PYQV L E+IAELI ++ + DIRDES+ Sbjct: 264 RMRAVVEVEEDKRGRPALVVSELPYQVNPDNLAERIAELIKEGKLAGIADIRDESSGRTG 323 Query: 309 VRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368 +RIVL K R +++ +++ + ++ F NM L G VP+ + L ++ ++ H+ Sbjct: 324 MRIVLVLK-RDAVAKVVLNNLYKHTQLQETFGANMLALVDG-VPRTLNLAQFIRYYVEHQ 381 Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTE 425 EV+ RR++FR++ + R IL+GL A +DE+IA+IR + + ++ + E Sbjct: 382 IEVIRRRTAFRLRKAEERAHILRGLSKALDALDEVIALIRRSPTVEDARQGLIRLLEIDE 441 Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485 Q AIL+++LR L LE +I +L L E + +L ++Q +I E E+ EI Sbjct: 442 IQATAILDMQLRRLAALERQRILDDLAKLELEIADLKDILAKPERQ-RRIVSE--ELGEI 498 Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHS 537 +K D RRT D + +I +E + V I+ G+ RS + Sbjct: 499 VAKWGD--ERRTKIIPF---DGEVSMEDLIAREDVVVTITRTGYAKRTKVDLYRSQRRGG 553 Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTDG-----KAYTLPAGNLLSGRGH 586 +S ++ D + T D IL + G KAY LP + ++ H Sbjct: 554 KGVSGATLRQDDIVSHFFVCSTHDWILFFTNKGRVYRAKAYELPEASRVAKGQH 607 >gi|315605501|ref|ZP_07880538.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Actinomyces sp. oral taxon 180 str. F0310] gi|315312768|gb|EFU60848.1| DNA topoisomerase (ATP-hydrolyzing) subunit A [Actinomyces sp. oral taxon 180 str. F0310] Length = 867 Score = 365 bits (937), Expect = 2e-98, Method: Compositional matrix adjust. Identities = 223/630 (35%), Positives = 353/630 (56%), Gaps = 36/630 (5%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 E ++ V L+ ++ YL YA+S I RA+PD+RDG KPVHRR+++AM + G ++F K Sbjct: 16 ERIRQVDLQKEMQRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMYDGGYRPSSSFSK 75 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 S+R+VGEV+G HPHGD ++YD+L RL QP+ RYPL++GQGNFG AA RYTE Sbjct: 76 SSRVVGEVMGNYHPHGDAAIYDALARLVQPWSLRYPLVAGQGNFGTPGNLGPAAPRYTEC 135 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 +M +A +++ +DE+ VDF+D Y+ + EP + P++FPNLLANG+ GIAVGMAT IP H Sbjct: 136 KMAPLAMEMVRDIDEECVDFQDNYDGRNQEPTILPARFPNLLANGSEGIAVGMATRIPPH 195 Query: 195 NVQEICEAALALIDNPEISIEKLLEYII----GPDFPTGGIIVESRESIVESYRLGRGGF 250 N++E+ + +PE + E+LLE ++ GPDFPTG I+ R+ I ++YR GRG Sbjct: 196 NLRELARGVEWALAHPEATREELLEALLTIIPGPDFPTGATIL-GRKGIEDAYRTGRGSI 254 Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV- 309 RA VEE+ +G C+VVTE+PYQV L +KIA+L+ I + DIRDE++ Sbjct: 255 TQRAVVSVEEI-QGRQCLVVTELPYQVNPDNLADKIAQLVRDGAIGGIADIRDETSGRTG 313 Query: 310 -RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368 R+V+ K ++ +++ +++ + ++ F NM L G VP+ + +DG ++ W+ H+ Sbjct: 314 QRLVIVLKRDAV-AKVVLNNLYKRTSLQENFSANMLALVDG-VPRTLSIDGFIRHWITHQ 371 Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTE 425 +V+ RR+ FR++ R+ IL+G L A +DE+IA+IR D+ + ++ + Sbjct: 372 IDVIVRRTRFRLRKALERLHILEGYLKALDALDEVIALIRRSPTVDEARVGLIDLLDVDA 431 Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485 Q DAIL L+LR L LE +I E L A + ++ +L + ++Q I+ E+ E+ + Sbjct: 432 VQADAILALQLRRLAALERQKIMDEHAELKARVDDLNDILATPERQRAIISAELSEIVDK 491 Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGW--------IRSLKSHS 537 F RRT D + +I +E + V I+ G+ RS K Sbjct: 492 FGDE-----RRTRILPF---DGEMSMEDLIPEEDVVVTITRDGFAKRTRTDNYRSQKRGG 543 Query: 538 VDLSALHFKEGDSLKIALHAHTTDRILLLSTD------GKAYTLPAGNLLSGRGHGEAIQ 591 + ++ D ++ TT LL T+ KAY +P G + H + Sbjct: 544 KGVRGTQLRDDDVVE-HFFVTTTHHWLLFFTNLGRVYRAKAYEIPEGGRDAKGQHVANLL 602 Query: 592 LLIDLNHNQDIVTAFVYDSTCKLLVVSSKG 621 H ++ Y+ L++ + +G Sbjct: 603 AFQPDEHIAQVLAIRTYEDADYLVLATKRG 632 >gi|73916876|gb|AAZ93306.1| topoisomerase IV subunit A [Streptococcus pneumoniae] gi|73916888|gb|AAZ93312.1| topoisomerase IV subunit A [Streptococcus pneumoniae] gi|73916930|gb|AAZ93333.1| topoisomerase IV subunit A [Streptococcus pneumoniae] Length = 821 Score = 365 bits (937), Expect = 2e-98, Method: Compositional matrix adjust. Identities = 223/709 (31%), Positives = 398/709 (56%), Gaps = 33/709 (4%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 N++ +SL + ER+ Y+ I++RA+PD+RDG KPV RRI+++M++ F +++KS Sbjct: 1 NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 60 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 A+ VG ++G HPHGD S+YD++VR++Q + R L+ GN G++DGD AA RYTEAR Sbjct: 61 AKSVGNIMGNFHPHGDFSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 120 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 ++++A +LQ +++ V F +++ + EP V P+ FPNLL NG++GI+ G AT IP HN Sbjct: 121 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 180 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 + E+ +AA+ +ID+P I+KL+E++ GPDFPTG II + R+ I ++Y G+G VR++ Sbjct: 181 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAII-QGRDEIKKAYETGKGRVVVRSK 239 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315 +E++ G IV+TEIPY++ K+ L++KI ++ + ++ + ++RDES D + Sbjct: 240 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 299 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 + + +L++ +F +D++ + NM + P+ + + IL ++AHRREV+ R Sbjct: 300 LKKDANTELVLNYLFKYTDLQINYNFNMVAID-NFTPRQVGIVPILSSYIAHRREVILAR 358 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432 S F + ++R+ I++GL+ +DE+IA+IR N+ K + + TE Q +AI+ Sbjct: 359 SRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIV 418 Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492 L+L L + ++ E L + + +++ + +N + E+REVK+ F+ Sbjct: 419 TLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP--- 475 Query: 493 GRRRTTFCEVSRA---DKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FK 546 R ++ + ++A D A+L I +E V ++ G+I+ S S L + Sbjct: 476 --RLSSLEDTAKAIEIDTASL----IAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKR 529 Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIV 603 + D L A TT +L+ ++ G P L R GE + Q + + N++I+ Sbjct: 530 DDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEIL 589 Query: 604 TAFV---YDSTCKLLVVSSKGNAFIVEESEIIA-NTRKGKT--FLKVSSE-EKMKLVVKV 656 V +D V+ G VE E T + K+ + K+ + +++ V + Sbjct: 590 YVEVLDQFDDATTYFAVTRLGQIKRVERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPI 649 Query: 657 TGDHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDGGI--SDVIC 702 D V +V +N L F+I+++P + ++ GV+ + K+ + S IC Sbjct: 650 KLDDVVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSGFIC 698 >gi|301320529|gb|ADK69172.1| DNA topoisomerase IV, A subunit [Mycoplasma mycoides subsp. mycoides SC str. Gladysdale] Length = 898 Score = 365 bits (937), Expect = 2e-98, Method: Compositional matrix adjust. Identities = 236/743 (31%), Positives = 420/743 (56%), Gaps = 41/743 (5%) Query: 24 FALEE----RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIV 79 + LEE R+ YA I+ERA+PD+RDG KPV RRI++AM+++ L F +KKSAR+V Sbjct: 10 YPLEELLGNRFSRYAKYIIQERALPDVRDGLKPVQRRILYAMNQLNLTFDKPYKKSARVV 69 Query: 80 GEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQV 139 GEVIGK HPHGD S+YD++VR++Q + PL+ QGN G+IDGDSAAA RYTEAR+T++ Sbjct: 70 GEVIGKYHPHGDSSIYDAMVRMSQWWKVNIPLVDMQGNNGSIDGDSAAAMRYTEARLTKI 129 Query: 140 AELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEI 199 + L+L+ ++++ V F +++ ++EP V PS FPN+L NG +GIA G AT++P HN+ EI Sbjct: 130 SNLLLEDLEKNTVIFSPNFDDSETEPTVLPSYFPNILVNGATGIAAGYATNMPPHNLSEI 189 Query: 200 CEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVE 259 +A + +I NP I+I+++L+ + GPDFPTG II ++++ I E++ G+G + ++W E Sbjct: 190 IDATINIIKNPNITIDQILKIVKGPDFPTGAII-QNKQGIREAFLTGKGKVIISSKWHQE 248 Query: 260 EVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRS 319 + IV+ EIPY+V K L++KI ++I +++IRDE+ ++ N Sbjct: 249 KNN-----IVIDEIPYEVVKQDLVKKIGDVIDNNPNLGIKEIRDETDRKGLRIVIELNEK 303 Query: 320 LDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFR 379 + + + + +F + + + N N++ + + P+ + L I+K +++H +EV +R+ F Sbjct: 304 ANLETVRKFLFKSTWLSVSYNYN-NIIIVDKQPKQLGLIDIIKAYISHYKEVFIKRTEFN 362 Query: 380 MQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDKPKPV--MVSRFSLTENQVDAILNLRL 436 + + R+EI+ GL+ A +DE+I +IR +E++ + +V F T NQ AI+++RL Sbjct: 363 LNKANLRLEIVNGLIKALSILDEVIKVIRKSENRLDAINNLVITFKFTTNQATAIVDMRL 422 Query: 437 RSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRR 496 L + ++ E L+ + +K +LN+ N+I + E K+ F G +R Sbjct: 423 YRLTSTDVNKLLLEKTELIDKIKKYQEILNNSLVLDNEIISRLEEAKKQF------GIKR 476 Query: 497 TTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD---LSALHFKEGDSLKI 553 + E D Q+ +I ++ I + IS G+I+ + ++ ++ LS+ K D Sbjct: 477 KSQVEDLVEDLDVDQKEVIIEKEINLWISKDGYIKVIDNNILNKNELSSFGKKPNDMWIS 536 Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRG--HGEAIQLLIDLNHNQDIVTAFV---- 607 D ++L+S Y++P + + + G I + N+ I+ A V Sbjct: 537 QGVCSNLDHLILISDQANYYSIPLYKISTSKWKEQGVHINSVATTQPNETIINALVIKEF 596 Query: 608 YDSTCKLLVVSSKGNAFIVEESEIIANTRK--GKTF--LKVSSEEKMKL--VVKVTGDHV 661 +ST LL+VS G +++ ++I K K+F +K+S ++ + ++ + Sbjct: 597 INSTQHLLLVSKNG---LIKRTQISDLETKIFNKSFKIMKISDDDSLVYADLISSKTSYC 653 Query: 662 AVVGENRKLLIFSIDQIPEMSR-GKGVRLQSYKDGGISDVICFKICEGLTWIDSAGRSYN 720 ++ +N + ++I+ IP S KGV+ + KD I + + + + I + +Y Sbjct: 654 CIITKNGYAVRYNIEDIPVQSTISKGVKAANLKDDYIISALSLQNNKDV-LIFTNKNNYK 712 Query: 721 RSENDLLG-WLGKRGGVGSLVPK 742 R + +L+ ++ + G+ LV K Sbjct: 713 RLDQNLIPIYIRPKKGIRILVEK 735 >gi|293570286|ref|ZP_06681355.1| DNA topoisomerase IV, A subunit [Enterococcus faecium E980] gi|291609693|gb|EFF38954.1| DNA topoisomerase IV, A subunit [Enterococcus faecium E980] Length = 816 Score = 365 bits (936), Expect = 2e-98, Method: Compositional matrix adjust. Identities = 219/707 (30%), Positives = 404/707 (57%), Gaps = 40/707 (5%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 + V+ ++L + +R+ Y+ I+ERA+PD+RDG KPV RRI+ AM++ G + F+K Sbjct: 5 QEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFAMNKDGNTYDKGFRK 64 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 SA+ VG ++G HPHGD S+Y+++VR++Q + R LI GN G++DGD AA RYTEA Sbjct: 65 SAKSVGNIMGNYHPHGDSSIYEAMVRMSQDWKLREVLIEMHGNNGSMDGDPPAAMRYTEA 124 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 R+++++ +L ++++ VD +++ + EP V P+++PNLL NG++GI+ G AT IP+H Sbjct: 125 RLSKLSGEMLADIEKETVDLVWNFDDTEKEPTVLPARYPNLLVNGSTGISAGYATEIPTH 184 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 N+ E+ + + +ID+P+ S+EKL+EYI GPDFPTGGI+ + ++ I ++Y GRG +R+ Sbjct: 185 NLAEVIDGTIYMIDHPQASLEKLMEYIPGPDFPTGGIL-QGKDEIKKAYETGRGKVILRS 243 Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314 + +E + IV+TEIPY+V K+ L++K+ E+ + K+I + ++RDES ++ Sbjct: 244 KTKIEAMKGNKQQIVITEIPYEVNKATLVKKMDEIRLNKKIDGIAEVRDESDRTGLQIVV 303 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 + + ++ +F ++++ + NM + P + L IL+ ++ HR++V+ + Sbjct: 304 ELKKDANAQGILNYLFKNTELQINYNFNMVAIDH-MTPHQVGLKDILRSYIEHRKQVITK 362 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDK--PKPVMVSRFSLTENQVDAI 431 RS F + +R I++GL+ A +DE+IA IR ++DK K +V F TE Q +AI Sbjct: 363 RSQFDLAKAQKRQHIVEGLMKALSILDEVIATIRESKDKKDAKKNLVDVFQFTEEQAEAI 422 Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491 + L+L L + +++ E ++L+A+ +++ +L++ K+ ++ + E+REVK+ +S + Sbjct: 423 VTLQLYRLTNTDITELQKESESLIAQITELNKILSNDKELFSVMKKELREVKKNYSSA-- 480 Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSVDL-SALHFKEG 548 R T E + Q ++ +E + V ++ G+++ SL+S+S + +EG Sbjct: 481 ----RLTTIEDEIEEIKIDTQVLVAQEDVIVSVTREGYVKRTSLRSYSASKPEEIGMREG 536 Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAI-QLLIDLNHNQDIVTA 605 D L + T D +LL++ P L L + GE I Q + +L+ ++ I+ Sbjct: 537 DYLLYSGELSTLDHVLLITNKANVIYRPVHELPDLKWKDAGEHISQTISNLSVDESILAV 596 Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG-----KTF-------LKVSSEEKMKLV 653 F Y + ++ + ++ +I TR +T+ +K+ +EE + Sbjct: 597 FPYQK------IQAEKTFVFISKNGLIKQTRMTEFEPWRTYKSRPLSCMKLKAEEDELIA 650 Query: 654 VKVTGDH----VAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDG 695 V + D V +V L + + +P + ++ GV+ + KDG Sbjct: 651 VYLKEDQPGLDVFLVTHQGMGLRYPLTDVPVVGAKAAGVKSMNLKDG 697 >gi|258616476|ref|ZP_05714246.1| DNA topoisomerase IV subunit A [Enterococcus faecium DO] Length = 764 Score = 365 bits (936), Expect = 2e-98, Method: Compositional matrix adjust. Identities = 219/707 (30%), Positives = 404/707 (57%), Gaps = 40/707 (5%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 + V+ ++L + +R+ Y+ I+ERA+PD+RDG KPV RRI+ AM++ G + F+K Sbjct: 5 QEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFAMNKDGNTYDKGFRK 64 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 SA+ VG ++G HPHGD S+Y+++VR++Q + R LI GN G++DGD AA RYTEA Sbjct: 65 SAKSVGNIMGNYHPHGDSSIYEAMVRMSQDWKLREVLIEMHGNNGSMDGDPPAAMRYTEA 124 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 R+++++ +L ++++ VD +++ + EP V P+++PNLL NG++GI+ G AT IP+H Sbjct: 125 RLSKLSGEMLADIEKETVDLVWNFDDTEKEPTVLPARYPNLLVNGSTGISAGYATEIPTH 184 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 N+ E+ + + +ID+P+ S+EKL+EYI GPDFPTGGI+ + ++ I ++Y GRG +R+ Sbjct: 185 NLAEVIDGTIYMIDHPQASLEKLMEYIPGPDFPTGGIL-QGKDEIKKAYETGRGKVILRS 243 Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314 + +E + IV+TEIPY+V K+ L++K+ E+ + K+I + ++RDES ++ Sbjct: 244 KTKIEAMKGNKQQIVITEIPYEVNKATLVKKMDEIRLNKKIDGIAEVRDESDRTGLQIVV 303 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 + + ++ +F ++++ + NM + P + L IL+ ++ HR++V+ + Sbjct: 304 ELKKDANAQGILNYLFKNTELQINYNFNMVAIDH-MTPHQVGLKDILRSYIEHRKQVITK 362 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDK--PKPVMVSRFSLTENQVDAI 431 RS F + +R I++GL+ A +DE+IA IR ++DK K +V F TE Q +AI Sbjct: 363 RSQFDLAKAQKRQHIVEGLMKALSILDEVIATIRESKDKKDAKKNLVDVFQFTEEQAEAI 422 Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491 + L+L L + +++ E ++L+A+ +++ +L++ K+ ++ + E+REVK+ +S + Sbjct: 423 VTLQLYRLTNTDITELQKESESLIAQITELNKILSNDKELFSVMKKELREVKKNYSSA-- 480 Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSVDL-SALHFKEG 548 R T E + Q ++ +E + V ++ G+++ SL+S+S + +EG Sbjct: 481 ----RLTTIEDEIEEIKIDTQVLVAQEDVIVSVTREGYVKRTSLRSYSASKPEEIGMREG 536 Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAI-QLLIDLNHNQDIVTA 605 D L + T D +LL++ P L L + GE I Q + +L+ ++ I+ Sbjct: 537 DYLLYSGELSTLDHVLLITNKANVIYRPVHELPDLKWKDAGEHISQTISNLSVDESILAV 596 Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG-----KTF-------LKVSSEEKMKLV 653 F Y + ++ + ++ +I TR +T+ +K+ +EE + Sbjct: 597 FPYQK------IQAEKTFVFISKNGLIKQTRMTEFEPWRTYKSRPLSCMKLKAEEDELIA 650 Query: 654 VKVTGDH----VAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDG 695 V + D V +V L + + +P + ++ GV+ + KDG Sbjct: 651 VYLKEDQPGLDVFLVTHQGMGLRYPLTDVPVVGAKAAGVKSMNLKDG 697 >gi|73916824|gb|AAZ93280.1| topoisomerase IV subunit A [Streptococcus pneumoniae] gi|73916828|gb|AAZ93282.1| topoisomerase IV subunit A [Streptococcus pneumoniae] gi|73916896|gb|AAZ93316.1| topoisomerase IV subunit A [Streptococcus pneumoniae] Length = 821 Score = 365 bits (936), Expect = 2e-98, Method: Compositional matrix adjust. Identities = 222/709 (31%), Positives = 397/709 (55%), Gaps = 33/709 (4%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 N++ +SL + ER+ Y+ I++RA+PD+RDG KPV RRI+++M++ F +++KS Sbjct: 1 NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 60 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 A+ VG ++G HPHGD S+YD++VR++Q + R L+ GN G++DGD AA RYTEAR Sbjct: 61 AKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 120 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 ++++A +LQ +++ V F +++ + EP V P+ FPNLL NG++GI+ G AT IP HN Sbjct: 121 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 180 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 + E+ +AA+ +ID+P I+KL+E++ GPDFPTG II + R+ I ++Y G+G VR++ Sbjct: 181 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAII-QGRDEIKKAYETGKGRVVVRSK 239 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315 +E++ G IV+TEIPY++ K+ L++KI ++ + ++ + ++RDES D + Sbjct: 240 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 299 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 + + +L++ +F +D++ + NM + P+ + + IL ++AHRREV+ R Sbjct: 300 LKKDANTELVLNYLFKYTDLQINYNFNMVAID-NFTPRQVGIVPILSSYIAHRREVILAR 358 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432 S F + ++R+ I++GL+ +DE+IA+IR N+ K + + TE Q +AI+ Sbjct: 359 SRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIV 418 Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492 L+L L + ++ E L + + +++ + +N + E+REVK+ F+ Sbjct: 419 TLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP--- 475 Query: 493 GRRRTTFCEVSRA---DKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FK 546 R ++ + ++A D A+L I +E V ++ G+I+ S S L + Sbjct: 476 --RLSSLEDTAKAIEIDTASL----IAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKR 529 Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIV 603 + D L A TT +L+ ++ G P L R GE + Q + + N++I+ Sbjct: 530 DDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEIL 589 Query: 604 TAFV---YDSTCKLLVVSSKGNAFIVEESEIIA-NTRKGKT--FLKVSSE-EKMKLVVKV 656 V +D + G VE E T + K+ + K+ + +++ V + Sbjct: 590 YVEVLDQFDDATTYFAATRLGQIKRVERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPI 649 Query: 657 TGDHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDGGI--SDVIC 702 D V +V +N L F+I+++P + ++ GV+ + K+ + S IC Sbjct: 650 KLDDVVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSGFIC 698 >gi|33469294|gb|AAQ19684.1| topoisomerase IV subunit A [Staphylococcus haemolyticus] Length = 798 Score = 365 bits (936), Expect = 2e-98, Method: Compositional matrix adjust. Identities = 225/697 (32%), Positives = 394/697 (56%), Gaps = 28/697 (4%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 E ++ +SL + +R+ Y+ I+ERA+PD+RDG KPV RRI+ AM G + F+K Sbjct: 3 EIIQDLSLEDVIGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMHSSGNTYDKNFRK 62 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 SA+ VG+VIG+ HPHGD SVYD++VRL+Q + R+ LI GN G+ID D AA RYTEA Sbjct: 63 SAKTVGDVIGQYHPHGDSSVYDAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEA 122 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 +++Q++E +++ ++++ V F Y++ EP+V P++FPNLL NG++GI+ G AT IP H Sbjct: 123 KLSQLSEELVRDINKETVAFVPNYDDTTLEPMVLPARFPNLLVNGSTGISSGYATDIPPH 182 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 N+ E+ +A L IDNP+I++ +L++YI GPDFPTGGII + + I ++Y G+G VR+ Sbjct: 183 NLAEVIQATLKYIDNPDITVTQLMKYIKGPDFPTGGII-QGVDGIKKAYETGKGKIVVRS 241 Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314 + E + G ++VTEIPY+V KS L+++I EL K++ + ++RDE+ + Sbjct: 242 KVDEETLRNGRQQLIVTEIPYEVNKSSLVKRIDELRADKKVDGIIEVRDETDRTGLRIAI 301 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 + ++ + + +F SD++ + NM +S GR P++M + I+ +L H+ EV+ Sbjct: 302 ELKKDVNAEAIKNYLFKNSDLQIAYNFNMVAISDGR-PKLMGIRQIIDSYLNHQIEVVAN 360 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVDAI 431 R+ + + ++R+ I++GL+ A +DE+I +IRN K +V+ F TE Q +AI Sbjct: 361 RTKYDLDHAEKRMHIVEGLMKALSILDEVITLIRNSKNKKDAKDNLVAEFEFTEAQAEAI 420 Query: 432 LNLRLRSLRKLEEYQIK---SELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488 + L+L L + ++ +EL NL+ E I L++ I E+ ++++ F K Sbjct: 421 VMLQLYRLTNTDIVALENEHNELANLIKEYRHI---LDNHDALLQVIKSELTDIRKRF-K 476 Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---F 545 S L E+ + DK + M+ E + + I+ +G+I+ + S + S + Sbjct: 477 SERLSSIEAEIAEI-KIDK----EVMVPSEDVVLSITRQGYIKRTSTRSFNASGVTEVGL 531 Query: 546 KEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAIQLLIDLNHNQDIV 603 K+GDSL +T D +L+ + G+ +P L R G+ + ++ L+ + +V Sbjct: 532 KDGDSLLKYQTVNTQDTVLVFTNKGRYLFIPVHKLADIRWKELGQHVSQIVPLDDYETVV 591 Query: 604 TAFVYDS--TCKLLVVSSKGNAFIVEESEIIANTRKGKTF--LKVSSEEKMKLVVKVTGD 659 + S V++++ + TR K +KV +++ V+++ D Sbjct: 592 DVYNEQSFKDDAFYVLATRNGMIKKSNVSLFKTTRYNKPLVAMKVKDNDELINVIRLNED 651 Query: 660 HVAVVGENRKL-LIFSIDQIPEMS-RGKGVRLQSYKD 694 + V ++ + L +S +++ + R GV+ + KD Sbjct: 652 QLISVLTHKGMSLTYSSEELSDTGLRAAGVKSINLKD 688 >gi|302522333|ref|ZP_07274675.1| DNA gyrase, A subunit [Streptomyces sp. SPB78] gi|302431228|gb|EFL03044.1| DNA gyrase, A subunit [Streptomyces sp. SPB78] Length = 822 Score = 365 bits (936), Expect = 2e-98, Method: Compositional matrix adjust. Identities = 239/716 (33%), Positives = 384/716 (53%), Gaps = 48/716 (6%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 EE + + + ++ YL YA S I RA+PD RDG KPV RRI++ M+EMGL + Sbjct: 22 EERILDIDVVDEMQSSYLEYAYSVIYSRALPDARDGLKPVQRRIVYQMNEMGLRPERGYV 81 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYT 132 K AR+VGEV+GKLHPHGD S+YD+LVR+AQ F R PL+ G GNFG++ + D AA RYT Sbjct: 82 KCARVVGEVMGKLHPHGDASIYDALVRMAQSFSMRVPLVDGHGNFGSLGNDDPPAAMRYT 141 Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192 E+RM A L+ + +DE+ VDF Y+ ++ EP+ P+ +PNLL NG SGIAVGMAT++ Sbjct: 142 ESRMADAAMLMTESIDENTVDFAPNYDGQEQEPLTLPAAYPNLLVNGASGIAVGMATNMA 201 Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252 HN+ E+ AA LI +P ++ L++Y+ GPD PTGG IV I ++Y GRG F+ Sbjct: 202 PHNLGEVVAAARHLIRHPNADLDTLMKYVPGPDLPTGGRIV-GLAGIRDAYANGRGSFKT 260 Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD--ESAEDVR 310 RA VE V +VVTE+P+ V ++I KI +L+ +K++ + D++D + +R Sbjct: 261 RATVTVENVTARRKGLVVTELPFTVGPEKVIAKIKDLVGSKKLQGIADVKDLTDREHGLR 320 Query: 311 IVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRRE 370 +V+ KN P+ ++E ++ L+ ME F +N L G+ P + L +L+ +L HR Sbjct: 321 LVIEIKN-GFVPEAVLEQLYKLTPMEESFGINNVALVDGQ-PLTLGLKEMLEVYLDHRFS 378 Query: 371 VLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQ 427 V+ RRS FR R+ +++GLL+A ++IDE+I +IR N + K ++ FSL+E Q Sbjct: 379 VVRRRSEFRRTKRMNRLHLVEGLLVALVDIDEVIRLIRSSENSAEAKQRLIEHFSLSETQ 438 Query: 428 VDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFS 487 IL+ LR L + + +++SE D L AE E++ ++L S + ++ E+ V + + Sbjct: 439 TQYILDTPLRRLTRFDRIELESERDRLNAEIEELTAILESDTELRKLVSGELAAVAKKYG 498 Query: 488 KSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI-RSLKSHSVDLSALHFK 546 RRT E + A + + +P V++S+ G I R+ + + + Sbjct: 499 TP-----RRTVLLESADTPVAAI-PLQVADDPCRVLLSSTGVIARTPGTEPLQEGSAKRA 552 Query: 547 EGDSLKIALHAHTTDRILLLSTDGK-----AYTLP-----AGNLLSGRGHGEAIQLLIDL 596 + D ++ A+ A + +++ G+ LP AG L G G + + L Sbjct: 553 KHDVIRSAVPATARGEVGAVTSAGRLLRITVVDLPQLAEGAGPALVG---GAPVAEFVRL 609 Query: 597 NHNQDIVTAFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKV 656 ++ +V D + L + + + AN E+++++ Sbjct: 610 EGDETLVCLCTLDESSPGLAIGTAQGVVKRVVPDYPAN------------REELEVITLR 657 Query: 657 TGDHVAVVGENR---KLLIFSIDQIPEMS-RGKGVRLQSYKDGGISDVICFKICEG 708 GD + E R + L+F D + + VR Q GG++ V K+ +G Sbjct: 658 EGDRIVGAAELRTGEEDLVFITDDAQLLRFQASAVRPQGRPAGGVAGV---KLADG 710 >gi|73916856|gb|AAZ93296.1| topoisomerase IV subunit A [Streptococcus pneumoniae] Length = 821 Score = 365 bits (936), Expect = 2e-98, Method: Compositional matrix adjust. Identities = 222/709 (31%), Positives = 398/709 (56%), Gaps = 33/709 (4%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 N++ +SL + ER+ Y+ I++RA+PD+RDG KPV RRI+++M++ F +++KS Sbjct: 1 NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 60 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 A+ VG ++G HPHGD S+Y+++VR++Q + R L+ GN G++DGD AA RYTEAR Sbjct: 61 AKSVGNIMGNFHPHGDSSIYNAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 120 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 ++++A +LQ +++ V F +++ + EP V P+ FPNLL NG++GI+ G AT IP HN Sbjct: 121 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 180 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 + E+ +AA+ +ID+P I+KL+E++ GPDFPTG II + R+ I ++Y G+G VR++ Sbjct: 181 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAII-QGRDEIKKAYETGKGRVVVRSK 239 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315 +E++ G IV+TEIPY++ K+ L++KI ++ + ++ + ++RDES D + Sbjct: 240 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 299 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 + + +L++ +F +D++ + NM + P+ + + IL ++AHRREV+ R Sbjct: 300 LKKDANTELVLNYLFKYTDLQINYNFNMVAID-NFTPRQVGIVPILSSYIAHRREVILAR 358 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432 S F + ++R+ I++GL+ +DE+IA+IR N+ K + + TE Q +AI+ Sbjct: 359 SRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIV 418 Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492 L+L L + ++ E L + + +++ + +N + E+REVK+ F+ Sbjct: 419 TLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP--- 475 Query: 493 GRRRTTFCEVSRA---DKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FK 546 R ++ + ++A D A+L I +E V ++ G+I+ S S L + Sbjct: 476 --RLSSLEDTAKAIEIDTASL----IAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKR 529 Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIV 603 + D L A TT +L+ ++ G P L R GE + Q + + N++I+ Sbjct: 530 DDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEIL 589 Query: 604 TAFV---YDSTCKLLVVSSKGNAFIVEESEIIA-NTRKGKT--FLKVSSE-EKMKLVVKV 656 V +D V+ G VE E T + K+ + K+ + +++ V + Sbjct: 590 YVEVLDQFDDATTYFAVTRLGQIKRVERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPI 649 Query: 657 TGDHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDGGI--SDVIC 702 D V +V +N L F+I+++P + ++ GV+ + K+ + S IC Sbjct: 650 KLDDVVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSGFIC 698 >gi|271968324|ref|YP_003342520.1| DNA topoisomerase [Streptosporangium roseum DSM 43021] gi|270511499|gb|ACZ89777.1| DNA topoisomerase (ATP-hydrolyzing) [Streptosporangium roseum DSM 43021] Length = 831 Score = 365 bits (936), Expect = 2e-98, Method: Compositional matrix adjust. Identities = 210/541 (38%), Positives = 333/541 (61%), Gaps = 19/541 (3%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 EE + + + + +L YA S I +RA+PD RDG KPV RRI+++MSEMGL Sbjct: 15 EERIVDIDVSAEMRTSFLEYAYSVIYQRALPDARDGLKPVQRRILYSMSEMGLRPDRGHV 74 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KS+R+VG+V+GKLHPHGD ++YD+LVR+AQPF R PLI G GNFG+ D D AA RYTE Sbjct: 75 KSSRVVGDVMGKLHPHGDTAIYDALVRMAQPFSMRLPLIDGHGNFGSPD-DLPAAMRYTE 133 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 AR+ A ++Q +DED VDF+ Y+ +++EP V PS FPNLL NG +GIAVGMAT++ Sbjct: 134 ARLAAAAMAMVQSIDEDTVDFKPNYDGQETEPTVMPSAFPNLLVNGATGIAVGMATNMAP 193 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E+ AA LI P+ +++ L+ ++ GPD PTGG I+ + I ++Y GRG FR+R Sbjct: 194 HNLVEVVAAARHLIKKPDATLDDLMRFVPGPDLPTGGTII-GLDGIRDAYAKGRGTFRMR 252 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES--AEDVRI 311 A+ VE+V I+VTE+P+ V R++ KI EL+ AK++ + D++D S + + + Sbjct: 253 AKCSVEQVSPRRKGIIVTELPFNVGPERVVTKIRELVTAKKLQGISDLKDLSDRHKGLNL 312 Query: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371 V+ KN + P+ ++E ++ L+ ME F +N L G+ P+ + L +L+ ++ HR +V Sbjct: 313 VIEIKNGFI-PEAVLEELYRLTPMEETFGINNVALVEGQ-PRTLGLRELLQVYVDHRLDV 370 Query: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNED---KPKPVMVSRFSLTENQV 428 + RRS++R + + R+ +++GL+IA LNIDE+I +IR+ D + + ++ F L+E Q Sbjct: 371 VRRRSAYRRRKREDRLHLVEGLIIALLNIDEVIQVIRSSDDSAQARERLMEVFELSEIQA 430 Query: 429 DAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSK 488 IL+ LR L + ++ ++ E + L +E ++ ++L+S + ++ E+ +V + F Sbjct: 431 AYILDTPLRRLTRFDKLELDGEKETLESEIAELTAILSSEDKLRKVVSDELAQVSKTFGT 490 Query: 489 STDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEG 548 RRT E S + + +P V+ S+ G + + + D S L EG Sbjct: 491 P-----RRTVLLESSGVTRNASVPLEVADDPCLVLFSSTGLL----ARTTDASPLA-GEG 540 Query: 549 D 549 D Sbjct: 541 D 541 >gi|327330269|gb|EGE72018.1| DNA gyrase, A subunit [Propionibacterium acnes HL097PA1] Length = 844 Score = 365 bits (936), Expect = 2e-98, Method: Compositional matrix adjust. Identities = 197/521 (37%), Positives = 313/521 (60%), Gaps = 14/521 (2%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 EN+ V + +E +L YA S I RA+PD RDG KPV RRI++ M +MG+ K Sbjct: 12 ENIIDVDVSREMENSFLEYAYSVIYSRALPDARDGLKPVQRRILYTMGDMGVRPDRPHVK 71 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 SAR+VG+V+G+LHPHGD ++YD+LVR AQP+ R PL+ G GNFG++D AA RYTE Sbjct: 72 SARVVGQVMGQLHPHGDAAIYDALVRTAQPWAMRLPLVDGHGNFGSLDA-GPAAMRYTEC 130 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 RM A ++ G+DED VDF Y+ +++EP V P+ FPNLL NG SGIAVGMAT+IP H Sbjct: 131 RMAPPALTMIDGLDEDTVDFEPNYDGKETEPSVLPAAFPNLLVNGASGIAVGMATNIPPH 190 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 N+ E+ A ++D+P +++++ ++ GPD PTGG I+ + I ++Y GRG F++RA Sbjct: 191 NLVEVVAALRHMLDHPNADLDEIMRFVPGPDLPTGGRII-GLDGIADAYCTGRGSFKIRA 249 Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD--ESAEDVRIV 312 +E+V IVVTE+PY V R+I++I L+ +K+I + D++D + R+V Sbjct: 250 TARIEKVSPRRRGIVVTELPYMVGPERIIDQIKTLVQSKKITGIADVKDLTDLTNGTRLV 309 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 + KN ++P+ L+E ++ L+ +E F +N L G+ P+ + L +L+ +L HR +V Sbjct: 310 IEVKN-GINPEALLERLYKLTKLEDSFAINAVSLVEGQ-PRTLGLLEMLQVYLDHRLDVT 367 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVD 429 RR+ F++ R+ +++GLL+A ++ID++IAIIR+ + ++ F L E Q + Sbjct: 368 LRRTKFQLNKAQDRLHLVEGLLLAIVDIDDVIAIIRSSEDAAAARTRLMGTFDLDEVQAN 427 Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489 IL+++LR L K +++SE D L E + ++N + ++ E+ EV + Sbjct: 428 YILDMQLRRLTKFSTIELESERDELRERIEGLTLIVNDKAELRRVVSGELVEVSSKYGTP 487 Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI 530 RRT + + A + +P V++S G + Sbjct: 488 -----RRTVLLGAAPSVAAASAPLEVPDDPCWVLLSATGLL 523 >gi|315080627|gb|EFT52603.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes HL078PA1] Length = 844 Score = 365 bits (936), Expect = 2e-98, Method: Compositional matrix adjust. Identities = 197/521 (37%), Positives = 313/521 (60%), Gaps = 14/521 (2%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 EN+ V + +E +L YA S I RA+PD RDG KPV RRI++ M +MG+ K Sbjct: 12 ENIIDVDVSREMENSFLEYAYSVIYSRALPDARDGLKPVQRRILYTMGDMGVRPDRPHVK 71 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 SAR+VG+V+G+LHPHGD ++YD+LVR AQP+ R PL+ G GNFG++D AA RYTE Sbjct: 72 SARVVGQVMGQLHPHGDAAIYDALVRTAQPWAMRLPLVDGHGNFGSLDA-GPAAMRYTEC 130 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 RM A ++ G+DED VDF Y+ +++EP V P+ FPNLL NG SGIAVGMAT+IP H Sbjct: 131 RMAPPALTMIDGLDEDTVDFEPNYDGKETEPSVLPAAFPNLLVNGASGIAVGMATNIPPH 190 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 N+ E+ A ++D+P +++++ ++ GPD PTGG I+ + I ++Y GRG F++RA Sbjct: 191 NLVEVVAALRHMLDHPNADLDEIMRFVPGPDLPTGGRII-GLDGIADAYCTGRGSFKIRA 249 Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD--ESAEDVRIV 312 +E+V IVVTE+PY V R+I++I L+ +K+I + D++D + R+V Sbjct: 250 TARIEKVSPRRRGIVVTELPYMVGPERIIDQIKTLVQSKKITGIADVKDLTDLTNGTRLV 309 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 + KN ++P+ L+E ++ L+ +E F +N L G+ P+ + L +L+ +L HR +V Sbjct: 310 IEVKN-GINPEALLERLYKLTKLEDSFAINAVSLVEGQ-PRTLGLLEMLQVYLDHRLDVT 367 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVD 429 RR+ F++ R+ +++GLL+A ++ID++IAIIR+ + ++ F L E Q + Sbjct: 368 LRRTKFQLNKAQDRLHLVEGLLLAIVDIDDVIAIIRSSEDAAAARTRLMGTFDLDEVQAN 427 Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489 IL+++LR L K +++SE D L E + ++N + ++ E+ EV + Sbjct: 428 YILDMQLRRLTKFSTIELESERDELRERIEGLTLIINDKAELRRVVSGELVEVSSKYGTP 487 Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWI 530 RRT + + A + +P V++S G + Sbjct: 488 -----RRTVLLGAAPSVAAASAPLEVPDDPCWVLLSATGLL 523 >gi|257881182|ref|ZP_05660835.1| DNA topoisomerase IV subunit A [Enterococcus faecium 1,231,502] gi|257816840|gb|EEV44168.1| DNA topoisomerase IV subunit A [Enterococcus faecium 1,231,502] Length = 817 Score = 365 bits (936), Expect = 2e-98, Method: Compositional matrix adjust. Identities = 219/707 (30%), Positives = 405/707 (57%), Gaps = 40/707 (5%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 + V+ ++L + +R+ Y+ I+ERA+PD+RDG KPV RRI+ AM++ G + F+K Sbjct: 6 QEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFAMNKDGNTYDKGFRK 65 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 SA+ VG ++G HPHGD+S+Y+++VR++Q + R LI GN G++DGD AA RYTEA Sbjct: 66 SAKSVGNIMGNYHPHGDRSIYEAMVRMSQDWKLREVLIEMHGNNGSMDGDPPAAMRYTEA 125 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 R+++++ +L ++++ VD +++ + EP V P+++PNLL NG++GI+ G AT IP+H Sbjct: 126 RLSKLSGEMLADIEKETVDLVWNFDDTEKEPTVLPARYPNLLVNGSTGISAGYATEIPTH 185 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 N+ E+ + + +ID+P+ S+EKL+EYI GPDFPTGGI+ + ++ I ++Y GRG +R+ Sbjct: 186 NLAEVIDGTIYMIDHPQASLEKLMEYIPGPDFPTGGIL-QGKDEIKKAYETGRGKVILRS 244 Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314 + +E + IV+TEIPY+V K+ L++K+ E+ + K+I + ++RDES ++ Sbjct: 245 KTKIEAMKGNKQQIVITEIPYEVNKATLVKKMDEIRLNKKIDGIAEVRDESDRTGLQIVV 304 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 + + ++ +F ++++ + NM + P + L IL+ ++ HR++V+ + Sbjct: 305 ELKKDANAQGILNYLFKNTELQINYNFNMVAIDH-MTPHQVGLKDILRSYIEHRKQVITK 363 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDK--PKPVMVSRFSLTENQVDAI 431 RS F + +R I++GL+ A +DE+IA IR ++DK K +V F TE Q +AI Sbjct: 364 RSQFDLAKAQKRQHIVEGLMKALSILDEVIATIRESKDKKDAKKNLVDVFQFTEEQAEAI 423 Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491 + L+L L + +++ E ++L+A+ +++ +L++ K+ ++ + E+REVK+ +S + Sbjct: 424 VTLQLYRLTNTDITELQKESESLIAQITELNKILSNDKELFSVMKKELREVKKNYSSA-- 481 Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSVDL-SALHFKEG 548 R T E + Q ++ +E + V ++ G+++ SL+S+S + +EG Sbjct: 482 ----RLTTIEDEIEEIKIDTQVLVAQEDVIVSVTREGYVKRTSLRSYSASKPEEIGMREG 537 Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAI-QLLIDLNHNQDIVTA 605 D L + T D +LL++ P L L + GE I Q + +L+ ++ I+ Sbjct: 538 DYLLYSGELSTLDHVLLITNKANVIYRPVHELPDLKWKDAGEHISQTISNLSVDESILAV 597 Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG-----KTF-------LKVSSEEKMKLV 653 F Y + ++ + ++ +I TR +T+ +K+ +EE + Sbjct: 598 FPYQK------IQAEKTFVFISKNGLIKQTRMTEFEPWRTYKSRPLSCMKLKAEEDELIA 651 Query: 654 VKVTGDH----VAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDG 695 V + D V +V L + + +P + ++ GV+ + KDG Sbjct: 652 VYLKEDQPGLDVFLVTHQGMGLRYPLTDVPVVGAKAAGVKSMNLKDG 698 >gi|323339871|ref|ZP_08080140.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Lactobacillus ruminis ATCC 25644] gi|323092744|gb|EFZ35347.1| DNA topoisomerase (ATP-hydrolyzing) ParC [Lactobacillus ruminis ATCC 25644] Length = 817 Score = 365 bits (936), Expect = 2e-98, Method: Compositional matrix adjust. Identities = 230/715 (32%), Positives = 394/715 (55%), Gaps = 50/715 (6%) Query: 11 TLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGA 70 T N++ +SL + ER+ Y+ I+ERA+PD+RDG KPV RRI+ AM+E G F Sbjct: 2 TETHSNIQELSLEAVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILFAMNEDGNTFDK 61 Query: 71 AFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYR 130 F+KSA+ VG V+G HPHGD S+Y+++VRL+Q + R PLI GN G++DGD AA R Sbjct: 62 PFRKSAKSVGNVMGNYHPHGDSSIYEAMVRLSQYWKLREPLIEMHGNNGSMDGDPPAAMR 121 Query: 131 YTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS 190 YTEAR++++A +L+ +D+ V+ +++ + EP V P++FPNLL NG +GI+ G AT Sbjct: 122 YTEARLSEIAAEMLKDIDKKTVEMVPNFDDTEFEPTVLPARFPNLLVNGATGISAGYATE 181 Query: 191 IPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250 IP+HN+ E A + L+D+PE ++ L+++I GPDFPTGGI++ + I ++Y GRG Sbjct: 182 IPTHNLSETIHATIYLMDHPEAELDDLMKFIKGPDFPTGGIML-GLDGIKKAYETGRGKA 240 Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDES-AEDV 309 +RAR +E+V IV+ EIPY+V K+ L++KI E+ + K+ + ++RDES E + Sbjct: 241 MLRARTQIEDVRGAKQQIVIEEIPYEVNKALLVKKIDEIRLQKKAEGIAEVRDESDREGL 300 Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRR 369 RIV+ K + + ++ +F +D++ + NM + + P+ + L IL+ +L H+R Sbjct: 301 RIVVELK-KDANAQGILNYLFKNTDLQISYNFNMVAIDH-KCPKHVGLKKILESYLEHQR 358 Query: 370 EVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTEN 426 V+ +R+ F + R I+ GL+ A +D++I IR N+ K +VS F TE Sbjct: 359 IVVTKRTEFDLNKAKERKHIVDGLIKALSILDDVIKTIRASKNKKDAKANLVSSFDFTEK 418 Query: 427 QVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIF 486 Q +AI++L+L L + +++E ++L + +LN+GK+ I E++ + + + Sbjct: 419 QAEAIVSLQLYRLTNTDVTALQNEAEDLERRIVEYTKILNNGKELDKVIKKELKTIDKKY 478 Query: 487 SKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKS-HSVDLSAL 543 G R T + + M+ +E + +++S G+++ SL+S + D S Sbjct: 479 ------GTPRLTEIRAEIEELKIDTEVMVAQEDVMLLVSRDGYVKRSSLRSFKASDESDN 532 Query: 544 HFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGR--GHGEAIQLLIDLNHNQD 601 KE D + + A+T D +L+ + G P +++ R GE + + L+ ++ Sbjct: 533 GLKEEDVVILMKVANTLDHLLMFTNKGNVIYRPIHDIVDSRWKDTGEHLSQTVGLSDDER 592 Query: 602 IVTAFVYDSTCKLLVVSSKGNAFIVEESE------IIANTRKGKTFLKVSSEEKMKLVVK 655 ++ AF +DS K AF+ E ++ + + G+T+ S + + +K Sbjct: 593 VIEAFTFDSL-------EKEGAFVFATKEGMIKQTLLKDLKPGRTY---RSRAQTFIKLK 642 Query: 656 VTGDHVA----VVGENRKLLIFS-----------IDQIPEM-SRGKGVRLQSYKD 694 D V V EN L +F ++++P +R GV+ +D Sbjct: 643 TDTDEVIMAEFVETENEDLQVFCTTHAGYGLRYLLNEVPTTGARTSGVKCMDLRD 697 >gi|270292573|ref|ZP_06198784.1| topoisomerase IV, subunit A [Streptococcus sp. M143] gi|270278552|gb|EFA24398.1| topoisomerase IV, subunit A [Streptococcus sp. M143] Length = 826 Score = 365 bits (936), Expect = 2e-98, Method: Compositional matrix adjust. Identities = 223/709 (31%), Positives = 396/709 (55%), Gaps = 33/709 (4%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 N++ +SL + ER+ Y+ I++RA+PD+RDG KPV RRI+++M++ G F +++KS Sbjct: 3 NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDGNTFEKSYRKS 62 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 A+ VG ++G HPHGD S+YD++VR++Q + R L+ GN G++DGD AA RYTEAR Sbjct: 63 AKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVEMHGNNGSMDGDPPAAMRYTEAR 122 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 ++++A +LQ +++ V F +++ + EP V P+ FPNLL NG++GI+ G AT IP HN Sbjct: 123 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 182 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 + E+ +A + +ID+P ++KL+E++ GPDFPTG II + R+ I ++Y G+G VR++ Sbjct: 183 LAEVIDATVYMIDHPTAKVDKLMEFLPGPDFPTGAII-QGRDEIKKAYETGKGRVVVRSK 241 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315 +E++ G IV+TEIPY++ K+ L++KI ++ + ++ + ++RDES D + Sbjct: 242 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 301 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 + + +L++ +F +D++ + NM + P+ + + IL ++AHRREV+ R Sbjct: 302 LKKDANTELILNYLFKYTDLQINYNFNMVAID-NFTPRQVGIVPILSSYIAHRREVILAR 360 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432 S F + ++R+ I++GL+ +DE+IA+IR N+ K + + TE Q +AI+ Sbjct: 361 SRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIV 420 Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492 L+L L + ++ E L + + +++ + +N + E+REVK+ F+ Sbjct: 421 TLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP--- 477 Query: 493 GRRRTTFCEVSRA---DKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FK 546 R +T + ++ D A+L I +E V ++ G+I+ S S L + Sbjct: 478 --RLSTLEDTAKVIEIDTASL----IAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKR 531 Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIV 603 + D L A TT +L+ ++ G P L R GE + Q + + N++I+ Sbjct: 532 DDDRLIFVQTAKTTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEIL 591 Query: 604 TAFV---YDSTCKLLVVSSKGNAFIVEESEIIA-NTRKGKT--FLKVSSE-EKMKLVVKV 656 A V +D + G VE E T K K+ + K+ E +++ V + Sbjct: 592 YAEVVDQFDDATTYFAATRLGQIKRVERKEFSPWRTYKSKSVKYAKLKDETDQIVAVAPI 651 Query: 657 TGDHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYK--DGGISDVIC 702 D V ++ +N L F+I+++P + ++ GV+ + K D + IC Sbjct: 652 KLDDVLLISQNGYALRFNIEEVPVVGAKAAGVKAMNLKANDALQAAFIC 700 >gi|73916836|gb|AAZ93286.1| topoisomerase IV subunit A [Streptococcus pneumoniae] gi|73916838|gb|AAZ93287.1| topoisomerase IV subunit A [Streptococcus pneumoniae] Length = 821 Score = 365 bits (936), Expect = 2e-98, Method: Compositional matrix adjust. Identities = 223/709 (31%), Positives = 397/709 (55%), Gaps = 33/709 (4%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 N++ +SL + ER+ Y+ I++RA+PD+RDG KPV RRI+++M++ F +++KS Sbjct: 1 NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 60 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 A+ VG ++G HPHGD S+YD++VR++Q + L+ GN G++DGD AA RYTEAR Sbjct: 61 AKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNCEILVEMHGNNGSMDGDPPAAMRYTEAR 120 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 ++++A +LQ +++ V F +++ + EP V P+ FPNLL NG++GI+ G AT IP HN Sbjct: 121 LSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHN 180 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 + E+ +AA+ +ID+P I+KL+E++ GPDFPTG II + R+ I ++Y G+G VR++ Sbjct: 181 LAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAII-QGRDEIKKAYETGKGRVVVRSK 239 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFP 315 +E++ G IV+TEIPY++ K+ L++KI ++ + ++ + ++RDES D + Sbjct: 240 TEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIE 299 Query: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 + + +L++ +F +D++ + NM + P+ + + IL ++AHRREV+ R Sbjct: 300 LKKDANTELVLNYLFKYTDLQINYNFNMVAID-NFTPRQVGIVPILSSYIAHRREVILAR 358 Query: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR---NEDKPKPVMVSRFSLTENQVDAIL 432 S F + ++R+ I+KGL+ +DE+IA+IR N+ K + + TE Q +AI+ Sbjct: 359 SRFDKEKAEKRLHIVKGLISVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIV 418 Query: 433 NLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDL 492 L+L L + ++ E L + + +++ + +N + E+REVK+ F+ Sbjct: 419 TLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP--- 475 Query: 493 GRRRTTFCEVSRA---DKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALH---FK 546 R ++ + ++A D A+L I +E V ++ G+I+ S S L + Sbjct: 476 --RLSSLEDTAKAIEIDTASL----IAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKR 529 Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGH--GEAI-QLLIDLNHNQDIV 603 + D L A TT +L+ ++ G P L R GE + Q + + N++I+ Sbjct: 530 DDDRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEIL 589 Query: 604 TAFV---YDSTCKLLVVSSKGNAFIVEESEIIA-NTRKGKT--FLKVSSE-EKMKLVVKV 656 V +D V+ G VE E T + K+ + K+ + +++ V + Sbjct: 590 YVEVLDQFDDATTYFAVTRLGQIKRVERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPI 649 Query: 657 TGDHVAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDGGI--SDVIC 702 D V +V +N L F+I+++P + ++ GV+ + K+ + S IC Sbjct: 650 KLDDVVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKEDDVLQSGFIC 698 >gi|293556776|ref|ZP_06675339.1| DNA topoisomerase IV, A subunit [Enterococcus faecium E1039] gi|293563434|ref|ZP_06677883.1| DNA topoisomerase IV, A subunit [Enterococcus faecium E1162] gi|293568153|ref|ZP_06679489.1| DNA topoisomerase IV, A subunit [Enterococcus faecium E1071] gi|291589143|gb|EFF20955.1| DNA topoisomerase IV, A subunit [Enterococcus faecium E1071] gi|291601108|gb|EFF31397.1| DNA topoisomerase IV, A subunit [Enterococcus faecium E1039] gi|291604695|gb|EFF34180.1| DNA topoisomerase IV, A subunit [Enterococcus faecium E1162] Length = 816 Score = 365 bits (936), Expect = 2e-98, Method: Compositional matrix adjust. Identities = 219/707 (30%), Positives = 404/707 (57%), Gaps = 40/707 (5%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 + V+ ++L + +R+ Y+ I+ERA+PD+RDG KPV RRI+ AM++ G + F+K Sbjct: 5 QEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFAMNKDGNTYDKGFRK 64 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 SA+ VG ++G HPHGD S+Y+++VR++Q + R LI GN G++DGD AA RYTEA Sbjct: 65 SAKSVGNIMGNYHPHGDSSIYEAMVRMSQDWKLREVLIEMHGNNGSMDGDPPAAMRYTEA 124 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 R+++++ +L ++++ VD +++ + EP V P+++PNLL NG++GI+ G AT IP+H Sbjct: 125 RLSKLSGEMLADIEKETVDLVWNFDDTEKEPTVLPARYPNLLVNGSTGISAGYATEIPTH 184 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 N+ E+ + + +ID+P+ S+EKL+EYI GPDFPTGGI+ + ++ I ++Y GRG +R+ Sbjct: 185 NLAEVIDGTIYMIDHPQASLEKLMEYIPGPDFPTGGIL-QGKDEIKKAYETGRGKVILRS 243 Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314 + +E + IV+TEIPY+V K+ L++K+ E+ + K+I + ++RDES ++ Sbjct: 244 KTKIEAMKGNKQQIVITEIPYEVNKATLVKKMDEIRLNKKIDGIAEVRDESDRTGLQIVV 303 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 + + ++ +F ++++ + NM + P + L IL+ ++ HR++V+ + Sbjct: 304 ELKKDANAQGILNYLFKNTELQINYNFNMVAIDH-MTPHQVGLKDILRSYIEHRKQVITK 362 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDK--PKPVMVSRFSLTENQVDAI 431 RS F + +R I++GL+ A +DE+IA IR ++DK K +V F TE Q +AI Sbjct: 363 RSQFDLAKAQKRQHIVEGLMKALSILDEVIATIRESKDKKDAKKNLVDVFQFTEEQAEAI 422 Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491 + L+L L + +++ E ++L+A+ +++ +L++ K+ ++ + E+REVK+ +S + Sbjct: 423 VTLQLYRLTNTDITELQKESESLIAQITELNKILSNDKELFSVMKKELREVKKNYSSA-- 480 Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSVDL-SALHFKEG 548 R T E + Q ++ +E + V ++ G+++ SL+S+S + +EG Sbjct: 481 ----RLTTIEDEIEEIKIDTQVLVAQEDVIVSVTREGYVKRTSLRSYSASKPEEIGMREG 536 Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAI-QLLIDLNHNQDIVTA 605 D L + T D +LL++ P L L + GE I Q + +L+ ++ I+ Sbjct: 537 DYLLYSGELSTLDHVLLITNKANVIYRPVHELPDLKWKDAGEHISQTISNLSVDESILAV 596 Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG-----KTF-------LKVSSEEKMKLV 653 F Y + ++ + ++ +I TR +T+ +K+ +EE + Sbjct: 597 FPYQK------IQAEKTFVFISKNGLIKQTRMTEFEPWRTYKSRPLSCMKLKAEEDELIA 650 Query: 654 VKVTGDH----VAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDG 695 V + D V +V L + + +P + ++ GV+ + KDG Sbjct: 651 VYLKEDQPGLDVFLVTHQGMGLRYPLTDVPVVGAKAAGVKSMNLKDG 697 >gi|300857426|ref|YP_003782409.1| DNA gyrase subunit A [Corynebacterium pseudotuberculosis FRC41] gi|300684880|gb|ADK27802.1| DNA gyrase subunit A [Corynebacterium pseudotuberculosis FRC41] gi|302205166|gb|ADL09508.1| DNA gyrase subunit A [Corynebacterium pseudotuberculosis C231] gi|302329725|gb|ADL19919.1| DNA gyrase subunit A [Corynebacterium pseudotuberculosis 1002] gi|308275408|gb|ADO25307.1| DNA gyrase subunit A [Corynebacterium pseudotuberculosis I19] Length = 854 Score = 365 bits (936), Expect = 2e-98, Method: Compositional matrix adjust. Identities = 251/770 (32%), Positives = 409/770 (53%), Gaps = 49/770 (6%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 + + + L +E Y+ YA+S I RA+P++RDG KPVHRRI++AM + G + K Sbjct: 12 DRIHPIDLNEEMETSYIDYAMSVIVGRALPEVRDGLKPVHRRILYAMYDSGYRPERGYVK 71 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 SAR V + +G+ HPHGD ++YD+LVRLAQ + RYPL+ GQGNFG+ D AA RYTE Sbjct: 72 SARPVSDTMGQFHPHGDSAIYDTLVRLAQDWNMRYPLVDGQGNFGSRGNDGPAAMRYTEC 131 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 R+T +A +++ + E+ VDF Y+ + EP V PS+ PNLL NG++GIAVGMAT+IP H Sbjct: 132 RLTPLAMEMVRDIRENTVDFSPNYDGKTQEPDVLPSRVPNLLMNGSNGIAVGMATNIPPH 191 Query: 195 NVQEICEAALALIDNP----EISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGF 250 N+ E+ +A L++NP ++E + Y+ GPDFPT G IV S + I ++Y GRG Sbjct: 192 NLNELADAIFWLLENPDADEAAALEACMSYVKGPDFPTSGQIVGS-QGINDAYTTGRGSI 250 Query: 251 RVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV- 309 R+R +EE G IV+TE+PYQV +I IAE + ++ + I DES++ V Sbjct: 251 RMRGVTSIEEEG-SRQIIVITELPYQVNPDNMISNIAEQVRDGKLAGISKIEDESSDRVG 309 Query: 310 -RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHR 368 RIV+ K R P +++ +++ S ++T F NM + G VP+ + LD +L+ ++ H+ Sbjct: 310 MRIVVTLK-RDAVPRVVLNNLYKHSQLQTNFGANMLSIVDG-VPRTLRLDQMLRYYVTHQ 367 Query: 369 REVLFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNE---DKPKPVMVSRFSLTE 425 EV+ RR+ R++ ++R IL+GL+ A +DE+IA+IR D + ++ ++ E Sbjct: 368 IEVIVRRTQHRLEEAEKRAHILRGLVKALDMLDEVIALIRRSATVDVARSGLIDLLTIDE 427 Query: 426 NQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEI 485 Q DAIL ++LR L LE +I EL + E +L ++Q A E+KEI Sbjct: 428 IQADAILAMQLRRLAALERQKIIDELAEIEIEIADYKDILAKPERQR---AIVRDELKEI 484 Query: 486 FSKSTDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVD------ 539 +K D RRT ++ A ++ +I +E + V I++ G+ + K + Sbjct: 485 VTKYGD--ERRT---QIIAATGDVTEEDLIARENVVVTITSTGYAKRTKVDAYKSQRRGG 539 Query: 540 --LSALHFKEGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLID 595 + K+ D ++ T D IL + G+ Y L A L S G+ + L++ Sbjct: 540 KGVRGAELKQDDVVRHFFVCSTHDWILFFTNFGRVYRLKAYELPEASRTARGQHVANLLE 599 Query: 596 LNHNQDIVTAF---VYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM-K 651 + I Y+ L++ +++G S+ +N G + + E+K+ Sbjct: 600 FQPEERIAQVIQLQSYEDAPYLVLATAQGRVKKSRLSDYESNRSGGLIAINLGEEDKLIG 659 Query: 652 LVVKVTGDHVAVVGENRKLLIFSI--DQIPEMSRG----KGVRLQSYKDGGISDVICFKI 705 + D + +V E + + FS DQ+ M R KG+R + G ++ + Sbjct: 660 AALCSNDDELLLVSEEGQSIRFSADDDQLRPMGRATAGVKGMRFR-----GDDQLLAMTV 714 Query: 706 CEGLTW--IDSAGRSYNRSENDLLGWLGKRGGVGSLVPKGFPRSGKFLSS 753 + + ++G R+ + G RGG+G + K P+ GK +++ Sbjct: 715 VRSDAYLLVATSGGYGKRTSLEEYSQQG-RGGLGVVTFKYTPKRGKLIAA 763 >gi|294622316|ref|ZP_06701359.1| DNA topoisomerase IV, A subunit [Enterococcus faecium U0317] gi|314948777|ref|ZP_07852149.1| DNA topoisomerase IV, A subunit [Enterococcus faecium TX0082] gi|291598208|gb|EFF29306.1| DNA topoisomerase IV, A subunit [Enterococcus faecium U0317] gi|313644843|gb|EFS09423.1| DNA topoisomerase IV, A subunit [Enterococcus faecium TX0082] Length = 816 Score = 365 bits (936), Expect = 2e-98, Method: Compositional matrix adjust. Identities = 219/707 (30%), Positives = 405/707 (57%), Gaps = 40/707 (5%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 + V+ ++L + +R+ Y+ I+ERA+PD+RDG KPV RRI+ AM++ G + F+K Sbjct: 5 QEVQELTLEEVMGDRFGRYSKYIIQERALPDIRDGLKPVQRRILFAMNKDGNTYDKGFRK 64 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 SA+ VG ++G HPHGD+S+Y+++VR++Q + R LI GN G++DGD AA RYTEA Sbjct: 65 SAKSVGNIMGNYHPHGDRSIYEAMVRMSQDWKLREVLIEMHGNNGSMDGDPPAAMRYTEA 124 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 R+++++ +L ++++ VD +++ + EP V P+++PNLL NG++GI+ G AT IP+H Sbjct: 125 RLSKLSGEMLADIEKETVDLVWNFDDTEKEPTVLPARYPNLLVNGSTGISAGYATEIPTH 184 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 N+ E+ + + +ID+P+ S+EKL+EYI GPDFPTGGI+ + ++ I ++Y GRG +R+ Sbjct: 185 NLAEVIDGTIYMIDHPQASLEKLMEYIPGPDFPTGGIL-QGKDEIKKAYETGRGKVILRS 243 Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLF 314 + +E + IV+TEIPY+V K+ L++K+ E+ + K+I + ++RDES ++ Sbjct: 244 KTKIEAMKGNKQQIVITEIPYEVNKATLVKKMDEIRLNKKIDGIAEVRDESDRTGLQIVV 303 Query: 315 PKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFR 374 + + ++ +F ++++ + NM + P + L IL+ ++ HR++V+ + Sbjct: 304 ELKKDANAQGILNYLFKNTELQINYNFNMVAIDH-MTPHQVGLKDILRSYIEHRKQVITK 362 Query: 375 RSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIR-NEDK--PKPVMVSRFSLTENQVDAI 431 RS F + +R I++GL+ A +DE+IA IR ++DK K +V F TE Q +AI Sbjct: 363 RSQFDLAKAQKRQHIVEGLMKALSILDEVIATIRESKDKKDAKKNLVDVFQFTEEQAEAI 422 Query: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491 + L+L L + +++ E ++L+A+ +++ +L++ K+ ++ + E+REVK+ +S + Sbjct: 423 VTLQLYRLTNTDITELQKESESLIAQITELNKILSNDKELFSVMKKELREVKKNYSSA-- 480 Query: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSVDL-SALHFKEG 548 R T E + Q ++ +E + V ++ G+++ SL+S+S + +EG Sbjct: 481 ----RLTTIEDEIEEIKIDTQVLVAQEDVIVSVTREGYVKRTSLRSYSASKPEEIGMREG 536 Query: 549 DSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAI-QLLIDLNHNQDIVTA 605 D L + T D +LL++ P L L + GE I Q + +L+ ++ I+ Sbjct: 537 DYLLYSGELSTLDHVLLITNKANVIYRPVHELPDLKWKDAGEHISQTISNLSVDESILAV 596 Query: 606 FVYDSTCKLLVVSSKGNAFIVEESEIIANTRKG-----KTF-------LKVSSEEKMKLV 653 F Y + ++ + ++ +I TR +T+ +K+ +EE + Sbjct: 597 FPYQK------IQAEKTFVFISKNGLIKQTRMTEFEPWRTYKSRPLSCMKLKAEEDELIA 650 Query: 654 VKVTGDH----VAVVGENRKLLIFSIDQIPEM-SRGKGVRLQSYKDG 695 V + D V +V L + + +P + ++ GV+ + KDG Sbjct: 651 VYLKEDQPGLDVFLVTHQGMGLRYPLTDVPVVGAKAAGVKSMNLKDG 697 >gi|50842527|ref|YP_055754.1| DNA topoisomerase IV subunit A [Propionibacterium acnes KPA171202] gi|289425287|ref|ZP_06427064.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes SK187] gi|289427072|ref|ZP_06428788.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes J165] gi|295130606|ref|YP_003581269.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes SK137] gi|50840129|gb|AAT82796.1| DNA gyrase subunit A [Propionibacterium acnes KPA171202] gi|289154265|gb|EFD02953.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes SK187] gi|289159541|gb|EFD07729.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes J165] gi|291375907|gb|ADD99761.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes SK137] gi|313764441|gb|EFS35805.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes HL013PA1] gi|313772177|gb|EFS38143.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes HL074PA1] gi|313807532|gb|EFS46019.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes HL087PA2] gi|313810042|gb|EFS47763.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes HL083PA1] gi|313812930|gb|EFS50644.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes HL025PA1] gi|313815980|gb|EFS53694.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes HL059PA1] gi|313818574|gb|EFS56288.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes HL046PA2] gi|313820341|gb|EFS58055.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes HL036PA1] gi|313822853|gb|EFS60567.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes HL036PA2] gi|313825216|gb|EFS62930.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes HL063PA1] gi|313827504|gb|EFS65218.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes HL063PA2] gi|313830369|gb|EFS68083.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes HL007PA1] gi|313833742|gb|EFS71456.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes HL056PA1] gi|313838746|gb|EFS76460.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes HL086PA1] gi|314915434|gb|EFS79265.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes HL005PA4] gi|314918284|gb|EFS82115.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes HL050PA1] gi|314920096|gb|EFS83927.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes HL050PA3] gi|314925229|gb|EFS89060.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes HL036PA3] gi|314931618|gb|EFS95449.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes HL067PA1] gi|314955671|gb|EFT00073.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes HL027PA1] gi|314958185|gb|EFT02288.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes HL002PA1] gi|314959988|gb|EFT04090.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes HL002PA2] gi|314967846|gb|EFT11945.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes HL037PA1] gi|314973373|gb|EFT17469.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes HL053PA1] gi|314976052|gb|EFT20147.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes HL045PA1] gi|314978410|gb|EFT22504.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes HL072PA2] gi|314983927|gb|EFT28019.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes HL005PA1] gi|315084299|gb|EFT56275.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes HL027PA2] gi|315085642|gb|EFT57618.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes HL002PA3] gi|315088936|gb|EFT60912.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes HL072PA1] gi|315095918|gb|EFT67894.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes HL038PA1] gi|315098549|gb|EFT70525.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes HL059PA2] gi|315101094|gb|EFT73070.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes HL046PA1] gi|315105639|gb|EFT77615.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes HL030PA1] gi|315108313|gb|EFT80289.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes HL030PA2] gi|327326200|gb|EGE67990.1| DNA gyrase, A subunit [Propionibacterium acnes HL096PA2] gi|327331925|gb|EGE73662.1| DNA gyrase, A subunit [Propionibacterium acnes HL096PA3] gi|327443127|gb|EGE89781.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes HL013PA2] gi|327445910|gb|EGE92564.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes HL043PA2] gi|327448110|gb|EGE94764.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes HL043PA1] gi|327450769|gb|EGE97423.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes HL087PA3] gi|327453887|gb|EGF00542.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes HL083PA2] gi|328753457|gb|EGF67073.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes HL020PA1] gi|328754187|gb|EGF67803.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes HL087PA1] gi|328754561|gb|EGF68177.1| DNA gyrase/topoisomerase IV, A subunit [Propionibacterium acnes HL025PA2] gi|328760839|gb|EGF74405.1| DNA gyrase, A subunit [Propionibacterium acnes HL099PA1] gi|332675446|gb|AEE72262.1| DNA gyrase subunit A [Propionibacterium acnes 266] Length = 844 Score = 364 bits (935), Expect = 2e-98, Method: Compositional matrix adjust. Identities = 197/521 (37%), Positives = 313/521 (60%), Gaps = 14/521 (2%) Query: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 EN+ V + +E +L YA S I RA+PD RDG KPV RRI++ M +MG+ K Sbjct: 12 ENIIDVDVSREMENSFLEYAYSVIYSRALPDARDGLKPVQRRILYTMGDMGVRPDRPHVK 71 Query: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEA 134 SAR+VG+V+G+LHPHGD ++YD+LVR AQP+ R PL+ G GNFG++D AA RYTE Sbjct: 72 SARVVGQVMGQLHPHGDAAIYDALVRTAQPWAMRLPLVDGHGNFGSLDA-GPAAMRYTEC 130 Query: 135 RMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 RM A ++ G+DED VDF Y+ +++EP V P+ FPNLL NG SGIAVGMAT+IP H Sbjct: 131 RMAPPALTMIDGLDEDTVDFEPNYDGKETEPSVLPAAFPNLLVNGASGIAVGMATNIPPH 190 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRA 254 N+ E+ A ++D+P +++++ ++ GPD PTGG I+ + I ++Y GRG F++RA Sbjct: 191 NLVEVVAALRHMLDHPNADLDEIMRFVPGPDLPTGGRII-GLDGIADAYCTGRGSFKIRA 249 Query: 255 RWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRD--ESAEDVRIV 312 +E+V IVVTE+PY V R+I++I L+ +K+I + D++D + R+V Sbjct: 250 TARIEKVSPRRRGIVVTELPYMVGPERIIDQIKTLVQSKKITGIADVKDLTDLTNGTRLV 309 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 + KN ++P+ L+E ++ L+ +E F +N L G+ P+ + L +L+ +L HR +V Sbjct: 310 IEVKN-GINPEALLERLYKLTKLEDSFAINAVSLVEGQ-PRTLGLLEMLQVYLDHRLDVT 367 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPV---MVSRFSLTENQVD 429