>gnl|CDD|130134 TIGR01062, parC_Gneg, DNA topoisomerase IV, A subunit, proteobacterial. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason. Length = 735

Score = 747 bits (1929), Expect = 0.0 Identities = 297/746 (39%), Positives = 461/746 (61%), Gaps = 24/746 (3%) Query: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 ++ + L EE YL Y++ I +RA+P + DG KPV RRI++AMSE+GL+ A +KKSA Sbjct: 1 IENIDLGNFTEEAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNANAKYKKSA 60 Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEAR 135 R VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S AA RYTE+R Sbjct: 61 RTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESR 120 Query: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 +++++EL+L+ + + VDFR ++ EPV+ P++ PN+L NGT+GIAVGMAT IP HN Sbjct: 121 LSKISELLLEELGQGTVDFRPNFDGTLLEPVILPARLPNILLNGTTGIAVGMATDIPPHN 180 Query: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 + E+ +AAL LIDNP+ ++ +L + GPDFPT I++ E I + Y GRG FR+RAR Sbjct: 181 LHELADAALYLIDNPKAGLDDILNIVQGPDFPTEAEIIDKAEEIRKIYETGRGSFRMRAR 240 Query: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVL 313 W E+ IV++ +P+Q+ KS++IE+IA + K++P++ DIRDES + +R+V+ Sbjct: 241 WKKEDGQ-----IVISALPHQISKSKVIEQIAIQMKDKKLPMISDIRDESDHENPIRVVI 295 Query: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373 P++ +DPD++ME +F +D+E + LNMN++ + VP V L IL+EWL RR + Sbjct: 296 VPRSNRVDPDIVMEHLFATTDLEKSYRLNMNMIGLDNVPAVKNLLEILQEWLVFRRNTVI 355 Query: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILN 433 RR ++R+ + +R+ IL+GL IA+LNIDE+I IIR ED+PK +++ RF L+ Q +AILN Sbjct: 356 RRLTYRLNKVLQRLHILEGLRIAFLNIDEVIEIIREEDEPKTILMERFKLSAIQAEAILN 415 Query: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493 LRLR L KLEE+ I E L E+ ++ +L S ++ + EI+ + + Sbjct: 416 LRLRHLAKLEEHAIIDEQSELEKERAILEKILKSERELNQLVKKEIQADATKYGLA---- 471 Query: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKI 553 RR++ E A K + MI KEP+T+++S GW+RS K H +DLS L +K GDS K Sbjct: 472 -RRSSLEEREEA-KQVSEIDMIPKEPVTIILSKMGWVRSAKGHDIDLSTLKYKAGDSEKA 529 Query: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613 + + +++ + + G++Y L NL S RG GE + + L I +Y Sbjct: 530 IIEGKSNQKVVFIDSTGRSYALDPDNLPSARGQGEPLTGKLLLPIGATITNILMYSPNQL 589 Query: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--KLVVKVTGDHVAVVGENRKLL 671 LL+ S G F+ +++IA + GK + + + L V D +A + E ++L Sbjct: 590 LLMASDAGYGFLCNFNDLIARNKAGKALINLPENASVIAPLPVNGDSDMIAAITEAGRML 649 Query: 672 IFSIDQIPEMSRGKGVRLQSYK-------DGGISDVICFKICEGLTWIDSAGRSYNRSEN 724 +F ID +PE+S+GKG +L + G+ D+ F +GL+W + R Sbjct: 650 VFPIDDLPELSKGKGNKLIRIPSANAKRGEDGLLDLKIFNKQDGLSW-NDGKRKIQLEPE 708 Query: 725 DLLGWLGKRGGVGSLVPKGFPRSGKF 750 +L +LG+RG G+ +P+G P++ +F Sbjct: 709 ELQKFLGERGRFGTTLPRGLPKNNRF 734

RPSBLAST alignment for GI: 254780353 and conserved domain: TIGR01062