RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddA 21,609 sequences; 6,263,737 total letters Searching..................................................done Query= gi|254780353|ref|YP_003064766.1| DNA topoisomerase IV subunit A [Candidatus Liberibacter asiaticus str. psy62] (753 letters) >gnl|CDD|30537 COG0188, GyrA, Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit [DNA replication, recombination, and repair]. Length = 804 Score = 726 bits (1876), Expect = 0.0 Identities = 312/746 (41%), Positives = 449/746 (60%), Gaps = 24/746 (3%) Query: 14 EENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK 73 E ++ + + ++ YL YA+S I RA+PD+RDG KPV RRI++AM E+GL +K Sbjct: 5 SEEIEPIDIEDEMKRSYLDYAMSVIVGRALPDVRDGLKPVQRRILYAMFELGLTPDKKYK 64 Query: 74 KSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTE 133 KSARIVG+V+GK HPHGD S+YD+LVR+AQ F RYPL+ GQGNFG+IDGD AAA RYTE Sbjct: 65 KSARIVGDVMGKYHPHGDSSIYDALVRMAQDFSLRYPLVDGQGNFGSIDGDPAAAMRYTE 124 Query: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 AR++++AE +L+ +D+D VDF Y+ + EP V P++FPNLL NG+SGIAVGMAT+IP Sbjct: 125 ARLSKIAEELLEDIDKDTVDFVPNYDGSEKEPEVLPARFPNLLVNGSSGIAVGMATNIPP 184 Query: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 HN+ E+ +A +ALIDNP+ +I++L+E I GPDFPTGGII+ R I E+Y GRG RVR Sbjct: 185 HNLGEVIDALIALIDNPDATIDELMEIIKGPDFPTGGIII-GRSGIREAYETGRGSIRVR 243 Query: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED-VRIV 312 A+ +E+ G IV+TEIPYQV K++LIEKIAEL+ K+I + DIRDES + +RIV Sbjct: 244 AKAEIEDTKNGREQIVITEIPYQVNKAKLIEKIAELVKEKKIEGISDIRDESDREGIRIV 303 Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372 + K R ++++ ++F L+D++T F +NM L GR P+V+ L IL E+L HR EV+ Sbjct: 304 IELK-RDAVAEVVLNNLFKLTDLQTSFNVNMLALVNGR-PKVLNLKEILSEFLEHRLEVV 361 Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVD 429 RR+ + + + R+ IL+GLLIA LNIDE+I IIR K +++RF L+E Q + Sbjct: 362 TRRTEYELNKAEERLHILEGLLIALLNIDEVIEIIRESKDKPEAKEELMARFGLSEKQAE 421 Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489 AIL+LRLR L LEE +I+ EL L E ++ +L S ++ + I E+ E+K+ F Sbjct: 422 AILDLRLRRLTGLEEEKIEKELKELEKEIADLEKILASEERLLDIIKKELLEIKKKFGD- 480 Query: 490 TDLGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIR--SLKSHSVD-LSALHFK 546 RRT E + + +I +E + V +S++G+I+ LK + +S L K Sbjct: 481 ----ERRTEIVE--EEEDEIEDEDLIAEEDVVVTLSHKGYIKRVPLKGYEAQRVSGLGLK 534 Query: 547 EGDSLKIALHAHTTDRILLLSTDGKAYTLPAGNL--LSGRGHGEAIQLLIDLNHNQDIVT 604 EGD L+ A+T D +L ++ G+ Y L L S R GE I L+ L + I Sbjct: 535 EGDFLERLFEANTHDTLLFFTSKGRVYKLKVYELPEGSRRSRGEPIVNLLSLEKGEKITA 594 Query: 605 AFVYDSTCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--DHVA 662 + L + + KG SE KGK +K+ +++ V + D + Sbjct: 595 VLPVNDDQYLFLATKKGYVKKTSLSEFKNIRSKGKIAIKLKEGDELVSVSLTSDGDDDIL 654 Query: 663 VVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGGISDVICFKICEGLT-WIDSAGRSYN 720 +V N K L F ++ EM RG KGV+ K+G V + + + R Y Sbjct: 655 LVTSNGKALRFPESEVREMGRGAKGVKGIKLKEGD-KVVSLSVVEDDEAKLLTVTERGYG 713 Query: 721 RSENDLLGWLGKRGGVGSLVPKGFPR 746 + + KRGG G ++ KG R Sbjct: 714 KRTKISEYPVTKRGGKGVILIKGTKR 739 >gnl|CDD|144201 pfam00521, DNA_topoisoIV, DNA gyrase/topoisomerase IV, subunit A. Length = 428 Score = 518 bits (1337), Expect = e-147 Identities = 200/436 (45%), Positives = 281/436 (64%), Gaps = 17/436 (3%) Query: 41 RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLVR 100 RAIPD+RDG KPV RRI++AM E+GL+ +KK AR+VG+V+GK HPHGD S+YD+LVR Sbjct: 1 RAIPDVRDGLKPVQRRILYAMFELGLNLDKKYKKVARLVGDVMGKYHPHGDASIYDALVR 60 Query: 101 LAQPFVQRYPLISGQGNFGNI-DGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYN 159 +AQ FV PL+ GQGNFG+ DGD AAA RYTEAR++++A + + +D+D VDF Y+ Sbjct: 61 MAQDFVGNIPLLDGQGNFGSRLDGDKAAAMRYTEARLSKIARELFKDIDKDTVDFVPNYD 120 Query: 160 EEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLE 219 + EP V P PNLL NG SGIAVGMAT+IP HN+ E+ +A +AL+D PEI++ L Sbjct: 121 GSEKEPTVLPPIIPNLLVNGASGIAVGMATNIPPHNLGEVIDALIALLDGPEITL---LL 177 Query: 220 YIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQK 279 I GPDFPTGG I+ I E+Y+ GRG VRA+ +EE IV+TE+PY V Sbjct: 178 KIPGPDFPTGGGII-GSGGIREAYKTGRGKITVRAKIEIEE----RKTIVITELPYGVWT 232 Query: 280 SRLIEKIAELIIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRF 339 +LIE I EL+ +I DIRDES VRIV+ K R DP++++ ++ + +++ F Sbjct: 233 EKLIESIEELVKNGKIK-GSDIRDESDRGVRIVIELK-RGADPEVVLNKLYKKTKLQSSF 290 Query: 340 PLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYLN 399 N VL P+ + L ILKE+L HR EV RR + ++ ++ R+ IL+GLL A Sbjct: 291 STNNLVL-FDGGPKYLNLKEILKEFLEHRLEVYKRRKEYLLEKLEERLHILEGLLKALNK 349 Query: 400 IDEIIAIIRNED---KPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLA 456 ID +I +IR K K ++ L+E Q D +L++RLR L K E +++ E++ L Sbjct: 350 IDFVIEVIRGSIDLNKAKKELIEE--LSEIQADYLLDMRLRRLTKEEIEKLEKEIEELEK 407 Query: 457 EKEKIDSLLNSGKQQW 472 E +++ +L S K+ W Sbjct: 408 EIAELEKILASEKKLW 423 >gnl|CDD|29149 cd00187, TOP4c, DNA Topoisomerase, subtype IIA; domain A'; bacterial DNA topoisomerase IV (C subunit, ParC), bacterial DNA gyrases (A subunit, GyrA),mammalian DNA toposiomerases II. DNA topoisomerases are essential enzymes that regulate the conformational changes in DNA topology by catalysing the concerted breakage and rejoining of DNA strands during normal cellular growth.. Length = 445 Score = 504 bits (1300), Expect = e-143 Identities = 206/447 (46%), Positives = 294/447 (65%), Gaps = 7/447 (1%) Query: 40 ERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARIVGEVIGKLHPHGDQSVYDSLV 99 RA+PD+RDG KPV RRI++AM + GL KK AR+VG+V GK HPHGD S+YD++V Sbjct: 2 GRALPDVRDGLKPVQRRILYAMFKRGLTPDKPEKKVARLVGDVAGKYHPHGDSSLYDTIV 61 Query: 100 RLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDAVDFRDTYN 159 R+AQ F PL+ QGNFG+ DGD AAA RYTE R++ +A L+L +D+ VDF Y+ Sbjct: 62 RMAQDFSNNIPLLDPQGNFGSRDGDDAAAMRYTETRLSPIARLLLPDIDDPTVDFVPNYD 121 Query: 160 EEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDNPEISIEKLLE 219 ++ EP V P FPNLL NG+SGIAVGMAT+IP HN++E+ +A ALIDNPE SI++L+E Sbjct: 122 GQEVEPEVLPPIFPNLLVNGSSGIAVGMATNIPPHNLREVIDALRALIDNPEASIDELME 181 Query: 220 YIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQK 279 I GPDFPTGGII E R I E+Y GRG + +R ++ +E+ G I +TE+PYQV K Sbjct: 182 IIKGPDFPTGGII-EGRAGIREAYETGRGRYIIRGKYEIEDD-EGRNTIEITELPYQVNK 239 Query: 280 SRLIEKIAELIIAKRIPLLEDIRDES-AEDVRIVLFPKNRSLDPDLLMESIFMLSDMETR 338 ++L EKIAEL+ K+I + D+RDES E +R V+ K ++ ++++ ++ ++ ++T Sbjct: 240 AKLKEKIAELVKDKKIEGISDVRDESDREGIRFVIELKRGAM-AEVVLNGLYKVTKLQTT 298 Query: 339 FPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYL 398 F +NM P+ + L IL+E+L HR EV RR + + + R+ IL+GLL A L Sbjct: 299 FGINMVAFDPNGRPKKLNLKEILQEFLDHRLEVYTRRKEYELGKAEARLHILEGLLKAIL 358 Query: 399 NIDEIIAIIRNEDKPKPVMVSRF---SLTENQVDAILNLRLRSLRKLEEYQIKSELDNLL 455 NIDE+I +IR+ D+ K ++ +E Q DAIL++RLR L KLE ++ EL L Sbjct: 359 NIDEVINLIRSSDEAKKALIEELEKLGFSEIQADAILDMRLRRLTKLEREKLLKELKELE 418 Query: 456 AEKEKIDSLLNSGKQQWNQIACEIREV 482 AE E ++ +L S ++ + E+ E Sbjct: 419 AEIEDLEKILASEERPKDLWKEELDEF 445 >gnl|CDD|35576 KOG0355, KOG0355, KOG0355, DNA topoisomerase type II [Chromatin structure and dynamics]. Length = 842 Score = 80.3 bits (198), Expect = 2e-15 Identities = 39/357 (10%), Positives = 80/357 (22%), Gaps = 23/357 (6%) Query: 16 NVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKS 75 N V++ E + I + + + S D Sbjct: 75 NTIKVTIDKEKNEISVYNNGKGIPVTIHKVEKVYVPELIFGNLLTSSNYDDDEKKVTGGR 134 Query: 76 ARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEAR 135 ++ D ++A + + D YT+ Sbjct: 135 NGYGAKLCNIFSTEFTVETADREYKMAFKQTWINNMTRDEEPKIVPSTDE----DYTKIT 190 Query: 136 MTQVAE-LILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSH 194 + E ++ +D+D V + + V K N Sbjct: 191 FSPDLEKFKMKELDDDIVALMARRAYDLAGSVK-SVKVELNGKNIPVKGFYDYVKMYLE- 248 Query: 195 NVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV-- 252 L + ++ + F + S V S +GG V Sbjct: 249 --VLWLNDDLKPLHEVLNFRWEVALALSDVGFQ--------QVSFVNSIATTKGGTHVDY 298 Query: 253 ---RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDV 309 + + +V + + K+ L + LI R Sbjct: 299 VVDQIVAKLIDVVKKKKVKKDISVKPFQVKNHLWVFVNCLIENPTFESQTKERLTLRPKR 358 Query: 310 RIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLA 366 + + ++ + S + + L+ R GI K A Sbjct: 359 FGSDCELSEKFTKAIELKGVVE-SILSKSLNKYKDDLAKKRGKLTSRSKGIPKLEDA 414 Score = 62.6 bits (152), Expect = 3e-10 Identities = 50/178 (28%), Positives = 79/178 (44%), Gaps = 38/178 (21%) Query: 41 RAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFK-------KSARIVGEV--IGKLHPHGD 91 +IP L DG KP R+++ FK K A++ G V + H HG+ Sbjct: 663 DSIPSLVDGLKPGQRKVLFT----------CFKRNDKREVKVAQLAGSVAEMSAYH-HGE 711 Query: 92 QSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYTEARMTQVAELILQGVDEDA 151 QS+ ++V LAQ FV G AA+ RY +++ + L+ D+ Sbjct: 712 QSLMSTIVNLAQDFV----------------GKDAASARYIFTKLSPLTRLLFPPADDLL 755 Query: 152 VDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQEICEAALALIDN 209 + + + + EP P P +L NG GI G +T IP++N +EI + LI+ Sbjct: 756 LKYLNEDGQR-VEPEYCPII-PMVLVNGAEGIGTGWSTFIPNYNPREIVKNIRRLING 811 >gnl|CDD|39067 KOG3863, KOG3863, KOG3863, bZIP transcription factor NRF1 [Transcription]. Length = 604 Score = 37.3 bits (86), Expect = 0.016 Identities = 26/99 (26%), Positives = 49/99 (49%), Gaps = 18/99 (18%) Query: 399 NIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSL----------RKLEEYQ-I 447 ++DEII + ++ M+S++ LTE Q+ I ++R R RKL+ + Sbjct: 460 SVDEIINLPVDDFN---EMLSKYKLTEEQLSLIRDIRRRGKNKVAAQNCRKRKLDCILNL 516 Query: 448 KSELDNLLAEKEKI----DSLLNSGKQQWNQIACEIREV 482 + E++ L EKE++ D L ++ Q++ +EV Sbjct: 517 EDEVEKLQKEKEQLLRERDELDSTLGVMKQQLSELYQEV 555 >gnl|CDD|146561 pfam03989, DNA_gyraseA_C, DNA gyrase C-terminal domain, beta-propeller. This repeat is found as 6 tandem copies at the C-termini of GyrA and ParC DNA gyrases. It is predicted to form 4 beta strands and to probably form a beta-propeller structure. This region has been shown to bind DNA non-specifically and may stabilize the DNA-topoisomerase complex. Length = 50 Score = 34.8 bits (81), Expect = 0.086 Identities = 10/40 (25%), Positives = 19/40 (47%), Gaps = 1/40 (2%) Query: 658 GDHVAVVGENRKLLIFSIDQIPEMSRG-KGVRLQSYKDGG 696 D + ++ + + + PE RG KGV+ + K+G Sbjct: 1 EDDLLLITSKGYVKRTPLSEFPEQGRGAKGVKAINLKEGD 40 Score = 29.8 bits (68), Expect = 3.3 Identities = 13/48 (27%), Positives = 21/48 (43%), Gaps = 2/48 (4%) Query: 613 KLLVVSSKGNAFIVEESEIIANTR--KGKTFLKVSSEEKMKLVVKVTG 658 LL+++SKG SE R KG + + +K+ V+ V Sbjct: 3 DLLLITSKGYVKRTPLSEFPEQGRGAKGVKAINLKEGDKVVSVLVVNE 50 >gnl|CDD|143453 cd07135, ALDH_F14-YMR110C, Saccharomyces cerevisiae aldehyde dehydrogenase family 14 and related proteins. Aldehyde dehydrogenase family 14 (ALDH14), isolated mainly from the mitochondrial outer membrane of Saccharomyces cerevisiae (YMR110C) and most closely related to the plant and animal ALDHs and fatty ALDHs family 3 members, and similar fungal sequences, are present in this CD. Length = 436 Score = 31.8 bits (73), Expect = 0.71 Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 3/45 (6%) Query: 394 LIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRS 438 +I ++DE I +I + D P + + F+ ++++D IL R RS Sbjct: 348 IIKVDDLDEAIKVINSRDTPLALYI--FTDDKSEIDHILT-RTRS 389 >gnl|CDD|143452 cd07134, ALDH_AlkH-like, Pseudomonas putida Aldehyde dehydrogenase AlkH-like. Aldehyde dehydrogenase AlkH (locus name P12693, EC=1.2.1.3) of the alkBFGHJKL operon that allows Pseudomonas putida to metabolize alkanes and the aldehyde dehydrogenase AldX of Bacillus subtilis (locus P46329, EC=1.2.1.3), and similar sequences, are present in this CD. Length = 433 Score = 31.0 bits (71), Expect = 1.2 Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 4/48 (8%) Query: 388 EILKGLL--IAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILN 433 EI +L I Y ++DE+I I KPKP+ + FS + V+ +L Sbjct: 337 EIFGPVLPIITYEDLDEVIEYIN--AKPKPLALYVFSKDKANVNKVLA 382 >gnl|CDD|35230 KOG0006, KOG0006, KOG0006, E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]. Length = 446 Score = 30.9 bits (69), Expect = 1.5 Identities = 21/103 (20%), Positives = 42/103 (40%), Gaps = 9/103 (8%) Query: 479 IREVKEIFSKSTDL--GRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSH 536 I ++KE+ +K + + R F ++ T+Q + ++ T ++ R W + K + Sbjct: 26 IFQLKEVVAKRQGVPADQLRVIFAGKELSNDTTVQNCDLSQQSATHIMLLRPWRKGQKFN 85 Query: 537 SV-------DLSALHFKEGDSLKIALHAHTTDRILLLSTDGKA 572 S L+ GDS+ + T R S G++ Sbjct: 86 STGGDENEPSLTNGATLPGDSVGLTAKLTTDSRKDAGSPAGRS 128 >gnl|CDD|37186 KOG1975, KOG1975, KOG1975, mRNA cap methyltransferase [RNA processing and modification]. Length = 389 Score = 30.3 bits (68), Expect = 1.9 Identities = 10/34 (29%), Positives = 15/34 (44%) Query: 675 IDQIPEMSRGKGVRLQSYKDGGISDVICFKICEG 708 D + ++ GKG L + GI + I I E Sbjct: 118 GDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEV 151 >gnl|CDD|34842 COG5245, DYN1, Dynein, heavy chain [Cytoskeleton]. Length = 3164 Score = 30.0 bits (67), Expect = 2.2 Identities = 49/287 (17%), Positives = 90/287 (31%), Gaps = 45/287 (15%) Query: 402 EIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDNLLAEKEKI 461 EI + P+ V +L N + A +L L L + ++ + N+ + ++I Sbjct: 2607 EIPDALEKLVSG-PLFVHEKAL--NALKACGSLFLWVLARYLLAKLMLSISNME-QTDEI 2662 Query: 462 DSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRRRT------------------------ 497 LL++ K+ +I E E EI + L Sbjct: 2663 AVLLHNLKKSRKEIEEEESESMEIEDRIDALKSEYNASVKRLESIRVEIAMFDEKALMYN 2722 Query: 498 -TFCEVSRADKATLQQAMIEKEPITVVISNRGWI-----RSLKSHSVDLSALHFKEGDSL 551 + CE+S + + I ++ + WI RS H +D+S L + + Sbjct: 2723 KSICELSSEFEKWRRMKSKYLCAIRYMLMSSEWILDHEDRSGFIHRLDVSFL-LRTKRFV 2781 Query: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611 L ++L + + R + + L N+ T +S Sbjct: 2782 STLLEDKNYRQVLSSCSLYGNDVISHSC---DRFDRDVYRALKHQMDNRTHSTILTSNSK 2838 Query: 612 CK----LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVV 654 S AF VE+S + +G L L+ Sbjct: 2839 TNPYKEYTYNDSWAEAFEVEDSGDLYKFEEG---LLELIVGHAPLIY 2882 >gnl|CDD|37391 KOG2180, KOG2180, KOG2180, Late Golgi protein sorting complex, subunit Vps53 [Intracellular trafficking, secretion, and vesicular transport]. Length = 793 Score = 30.0 bits (67), Expect = 2.7 Identities = 16/83 (19%), Positives = 35/83 (42%), Gaps = 12/83 (14%) Query: 440 RKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE----IFSKSTDLGRR 495 ++LEEY+ + A +K+D +++ +R+ +E IF + R Sbjct: 240 QQLEEYEQIFRENEEAASLDKLD-------RRYAWFKRLLRDFEEKWKPIFPADWHVAYR 292 Query: 496 RTT-FCEVSRADKATLQQAMIEK 517 T FC +R ++ + ++ Sbjct: 293 LTIEFCHQTRKQLESILKRRKKE 315 >gnl|CDD|29362 cd01940, Fructoselysine_kinase_like, Fructoselysine kinase-like. Fructoselysine is a fructoseamine formed by glycation, a non-enzymatic reaction of glucose with a primary amine followed by an Amadori rearrangement, resulting in a protein that is modified at the amino terminus and at the lysine side chains. Fructoseamines are typically metabolized by fructoseamine-3-kinase, especially in higher eukaryotes. In E. coli, fructoselysine kinase has been shown in vitro to catalyze the phosphorylation of fructoselysine. It is proposed that fructoselysine is released from glycated proteins during human digestion and is partly metabolized by bacteria in the hind gut using a protein such as fructoselysine kinase. This family is found only in bacterial sequences, and its oligomeric state is currently unknown.. Length = 264 Score = 29.8 bits (67), Expect = 3.0 Identities = 14/41 (34%), Positives = 19/41 (46%) Query: 530 IRSLKSHSVDLSALHFKEGDSLKIALHAHTTDRILLLSTDG 570 +LK VD+S KEG++ + DRI LS G Sbjct: 55 RSTLKRLGVDISHCRVKEGENAVADVELVDGDRIFGLSNKG 95 >gnl|CDD|36470 KOG1256, KOG1256, KOG1256, Long-chain acyl-CoA synthetases (AMP-forming) [Lipid transport and metabolism]. Length = 691 Score = 29.1 bits (65), Expect = 4.8 Identities = 15/112 (13%), Positives = 43/112 (38%), Gaps = 9/112 (8%) Query: 598 HNQDIVTAFVYDS----TCKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLV 653 + +V +YD+ ++ ++ + V+ ++ + K S +K + Sbjct: 154 YAYSLVNVPLYDTLGAEAVHYIINHAEISIVFVDNAKKAEKLLEIKEN---DSLPSLKAI 210 Query: 654 VKVTG--DHVAVVGENRKLLIFSIDQIPEMSRGKGVRLQSYKDGGISDVICF 703 +++ D + EN + ++S D+ E+ + + + IC+ Sbjct: 211 IQLDEPSDELKEKAENNGVEVYSWDEFEELGKKNQRKPRVPPKPDDLATICY 262 >gnl|CDD|38908 KOG3704, KOG3704, KOG3704, Heparan sulfate D-glucosaminyl 3-O-sulfotransferase [Posttranslational modification, protein turnover, chaperones]. Length = 360 Score = 28.8 bits (64), Expect = 5.5 Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%) Query: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFG 119 R +G+ G+ HPH D V L +PF ++ ++GQ +FG Sbjct: 317 RCLGKSKGRTHPHIDPEVIRRLREFYRPFNLKFYQMTGQ-DFG 358 >gnl|CDD|99968 cd03794, GT1_wbuB_like, This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.. Length = 394 Score = 28.8 bits (65), Expect = 6.3 Identities = 15/67 (22%), Positives = 24/67 (35%), Gaps = 12/67 (17%) Query: 157 TYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATS------------IPSHNVQEICEAAL 204 + V PSK +A G +A S +P + + + A L Sbjct: 301 PLKPGPAFEGVSPSKLFEYMAAGKPVLASVDGESAELVEEAGAGLVVPPGDPEALAAAIL 360 Query: 205 ALIDNPE 211 L+D+PE Sbjct: 361 ELLDDPE 367 >gnl|CDD|146633 pfam04100, Vps53_N, Vps53-like, N-terminal. Vps53 complexes with Vps52 and Vps54 to form a multi- subunit complex involved in regulating membrane trafficking events. Length = 375 Score = 28.2 bits (63), Expect = 8.8 Identities = 19/83 (22%), Positives = 35/83 (42%), Gaps = 12/83 (14%) Query: 440 RKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKE----IFSKSTDLGRR 495 ++LEEY+ + A +KID +++ +R+ +E IF + R Sbjct: 225 QQLEEYEQIFRENEEAAWLDKID-------RRYAWFKRLLRDFEEKYGPIFPADWHVAER 277 Query: 496 RTT-FCEVSRADKATLQQAMIEK 517 T FC V+R A + ++ Sbjct: 278 LTVEFCHVTRKQLAKILVRRDKE 300 >gnl|CDD|143454 cd07136, ALDH_YwdH-P39616, Bacillus subtilis aldehyde dehydrogenase ywdH-like. Uncharacterized Bacillus subtilis ywdH aldehyde dehydrogenase (locus P39616) most closely related to the ALDHs and fatty ALDHs of families 3 and 14, and similar sequences, are included in this CD. Length = 449 Score = 27.9 bits (63), Expect = 10.0 Identities = 8/19 (42%), Positives = 12/19 (63%) Query: 395 IAYLNIDEIIAIIRNEDKP 413 + Y +DE I II++ KP Sbjct: 339 LTYDTLDEAIEIIKSRPKP 357 Database: CddA Posted date: Feb 4, 2011 9:38 PM Number of letters in database: 6,263,737 Number of sequences in database: 21,609 Lambda K H 0.319 0.137 0.389 Gapped Lambda K H 0.267 0.0649 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21609 Number of Hits to DB: 8,949,653 Number of extensions: 493176 Number of successful extensions: 1160 Number of sequences better than 10.0: 1 Number of HSP's gapped: 1136 Number of HSP's successfully gapped: 32 Length of query: 753 Length of database: 6,263,737 Length adjustment: 101 Effective length of query: 652 Effective length of database: 4,081,228 Effective search space: 2660960656 Effective search space used: 2660960656 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 61 (27.4 bits)