RPSBLAST alignment of GI: 254780353 and protein with PDBid: 2inr
>2inr_A DNA topoisomerase 4 subunit A; topoisomerase II fold; HET: DNA; 2.80A {Staphylococcus aureus} Length = 514
Score = 485 bits (1249), Expect = e-137
Identities = 179/488 (36%), Positives = 299/488 (61%), Gaps = 10/488 (2%)
Query: 13 VEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAF 72
V E ++ +SL L +R+ Y+ I+ERA+PD+RDG KPV RRI++AM G F
Sbjct: 24 VSEIIQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNF 83
Query: 73 KKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDGDSAAAYRYT 132
+KSA+ VG+VIG+ HPHGD SVY+++VRL+Q + R+ LI GN G+ID D AA RYT
Sbjct: 84 RKSAKTVGDVIGQYHPHGDSSVYEAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYT 143
Query: 133 EARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIP 192
EA+++ +AE +L+ ++++ V F Y++ EP+V PS+FPNLL NG++GI+ G AT IP
Sbjct: 144 EAKLSLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRFPNLLVNGSTGISAGYATDIP 203
Query: 193 SHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRV 252
HN+ E+ +A L IDNP+I++ +L++YI GPDFPTGGII + + I ++Y G+G V
Sbjct: 204 PHNLAEVIQATLKYIDNPDITVNQLMKYIKGPDFPTGGII-QGIDGIKKAYESGKGRIIV 262
Query: 253 RARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAEDVRIV 312
R++ E + G +++TEIPY+V KS L+++I EL K++ + ++RDE+ +
Sbjct: 263 RSKVEEETLRNGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRI 322
Query: 313 LFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVL 372
+ ++ + + ++ SD++ + NM +S GR P++M + I+ +L H+ EV+
Sbjct: 323 AIELKKDVNSESIKNYLYKNSDLQISYNFNMVAISDGR-PKLMGIRQIIDSYLNHQIEVV 381
Query: 373 FRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKP---KPVMVSRFSLTENQVD 429
R+ F + ++R+ I++GL+ A +D++I +IR+ K ++ + TE Q +
Sbjct: 382 ANRTKFELDNAEKRMHIVEGLIKALSILDKVIELIRSSKNKRDAKENLIEVYEFTEEQAE 441
Query: 430 AILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKS 489
AI+ L+L L + ++ E L A +++ +L++ N I E+ E+K+ F
Sbjct: 442 AIVMLQLYRLTNTDIVALEGEHKELEALIKQLRHILDNHDALLNVIKEELNEIKKKFKS- 500
Query: 490 TDLGRRRT 497
R +
Sbjct: 501 ----ERLS 504