RPSBLAST alignment of GI: 254780353 and protein with PDBid: 2pff
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 1688
Score = 45.6 bits (107), Expect = 4e-05
Identities = 113/500 (22%), Positives = 182/500 (36%), Gaps = 144/500 (28%)
Query: 33 YALSTIKERAI----PDLRDGFKPVHRRIIH-AMSEMGLDFGAAFKKSARIVGEVIGKLH 87
Y S ++ I P+L +G+ P + +I + E L+ A K++A H
Sbjct: 894 YETSILEHSGIRLIEPELFNGYNPEKKEMIQEVIVEEDLEPFEASKETAEQFK------H 947
Query: 88 PHGDQ-SVYD---------SLVRLAQ---PFVQRYP-LISGQGNFGNI-DGDSAAAYRYT 132
HGD+ +++ L++ A P R+ L++GQ I G +A Y +
Sbjct: 948 QHGDKVDIFEIPETGEYSVKLLKGATLYIPKALRFDRLVAGQ-----IPTGWNAKTYGIS 1002
Query: 133 EARMTQVAEL---ILQGVDED--AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV-- 185
+ ++QV + +L V E A D Y + V S+ N +G G++
Sbjct: 1003 DDIISQVDPITLFVLVSVVEAFIASGITDPY---EMYKYVHVSEVGNCSGSGMGGVSALR 1059
Query: 186 GMATSI----PSHN--VQEICEAALALIDNPEISIEKLLEYIIGP-DFPTGGII--VESR 236
GM P N +QE + I+ + LL GP P G VES
Sbjct: 1060 GMFKDRFKDEPVQNDILQE------SFINTMSAWVNMLLISSSGPIKTPVGACATSVESV 1113
Query: 237 ESIVESYRLGRGGFRVRARWCVEEVG-------RGSWCIVVTEIPYQVQKSRLIEKIAEL 289
+ VE+ G+ AR C+ VG GS+ E S +E+
Sbjct: 1114 DIGVETILSGK------ARICI--VGGYDDFQEEGSF-----EFGNMKATSNTLEEFEH- 1159
Query: 290 IIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRF--PLNMNVLS 347
R P AE R +N ++ I M +D+ + P+ +++
Sbjct: 1160 ---GRTP---------AEMSRPATTTRNGFMEAQGAGIQIIMQADLALKMGVPI-YGIVA 1206
Query: 348 M--------GR-VPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYL 398
M GR VP P GIL H V + + M+ R+
Sbjct: 1207 MAATATDKIGRSVPA--PGKGILTTAREHHSSVKYASPNLNMKYRKRQ------------ 1252
Query: 399 NIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN--LLA 456
++ E + K EN+++A+ KLE +I SE N LL
Sbjct: 1253 -------LVTREAQIK-------DWVENELEAL---------KLEAEEIPSEDQNEFLLE 1289
Query: 457 EKEKI----DSLLNSGKQQW 472
+I +S L + +QQW
Sbjct: 1290 RTREIHNEAESQLRAAQQQW 1309