RPSBLAST alignment of GI: 254780353 and protein with PDBid: 2pff

>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 1688
 Score = 45.6 bits (107), Expect = 4e-05
 Identities = 113/500 (22%), Positives = 182/500 (36%), Gaps = 144/500 (28%)

Query: 33   YALSTIKERAI----PDLRDGFKPVHRRIIH-AMSEMGLDFGAAFKKSARIVGEVIGKLH 87
            Y  S ++   I    P+L +G+ P  + +I   + E  L+   A K++A          H
Sbjct: 894  YETSILEHSGIRLIEPELFNGYNPEKKEMIQEVIVEEDLEPFEASKETAEQFK------H 947

Query: 88   PHGDQ-SVYD---------SLVRLAQ---PFVQRYP-LISGQGNFGNI-DGDSAAAYRYT 132
             HGD+  +++          L++ A    P   R+  L++GQ     I  G +A  Y  +
Sbjct: 948  QHGDKVDIFEIPETGEYSVKLLKGATLYIPKALRFDRLVAGQ-----IPTGWNAKTYGIS 1002

Query: 133  EARMTQVAEL---ILQGVDED--AVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV-- 185
            +  ++QV  +   +L  V E   A    D Y   +    V  S+  N   +G  G++   
Sbjct: 1003 DDIISQVDPITLFVLVSVVEAFIASGITDPY---EMYKYVHVSEVGNCSGSGMGGVSALR 1059

Query: 186  GMATSI----PSHN--VQEICEAALALIDNPEISIEKLLEYIIGP-DFPTGGII--VESR 236
            GM        P  N  +QE      + I+     +  LL    GP   P G     VES 
Sbjct: 1060 GMFKDRFKDEPVQNDILQE------SFINTMSAWVNMLLISSSGPIKTPVGACATSVESV 1113

Query: 237  ESIVESYRLGRGGFRVRARWCVEEVG-------RGSWCIVVTEIPYQVQKSRLIEKIAEL 289
            +  VE+   G+      AR C+  VG        GS+     E       S  +E+    
Sbjct: 1114 DIGVETILSGK------ARICI--VGGYDDFQEEGSF-----EFGNMKATSNTLEEFEH- 1159

Query: 290  IIAKRIPLLEDIRDESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRF--PLNMNVLS 347
                R P         AE  R     +N  ++       I M +D+  +   P+   +++
Sbjct: 1160 ---GRTP---------AEMSRPATTTRNGFMEAQGAGIQIIMQADLALKMGVPI-YGIVA 1206

Query: 348  M--------GR-VPQVMPLDGILKEWLAHRREVLFRRSSFRMQAIDRRVEILKGLLIAYL 398
            M        GR VP   P  GIL     H   V +   +  M+   R+            
Sbjct: 1207 MAATATDKIGRSVPA--PGKGILTTAREHHSSVKYASPNLNMKYRKRQ------------ 1252

Query: 399  NIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRLRSLRKLEEYQIKSELDN--LLA 456
                   ++  E + K          EN+++A+         KLE  +I SE  N  LL 
Sbjct: 1253 -------LVTREAQIK-------DWVENELEAL---------KLEAEEIPSEDQNEFLLE 1289

Query: 457  EKEKI----DSLLNSGKQQW 472
               +I    +S L + +QQW
Sbjct: 1290 RTREIHNEAESQLRAAQQQW 1309