RPSBLAST alignment of GI: 254780353 and SCOP domain: d1bjta_

Alignment
>d1bjta_ e.11.1.1 (A:) DNA topoisomerase II, C-terminal fragment (residues 410-1202) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 760
 Score =  225 bits (573), Expect = 1e-59
 Identities = 93/539 (17%), Positives = 194/539 (35%), Gaps = 90/539 (16%)

Query: 10  NTLVEENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFG 69
            T+++  +K + +   + +  + ++L+    R+IP++ DGFKP  R++++   +  L   
Sbjct: 242 GTVLDPTLKEIPISDFINKELILFSLADN-IRSIPNVLDGFKPGQRKVLYGCFKKNLKSE 300

Query: 70  AAFKKSARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQR----YPLISGQGNFGNIDGDS 125
               + A  V E     + HG+QS+  +++ LAQ FV        L +G        G  
Sbjct: 301 LKVAQLAPYVSECTA--YHHGEQSLAQTIIGLAQNFVGSNNIYLLLPNGAFGTRATGGKD 358

Query: 126 AAAYRYTEARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAV 185
           AAA RY    + ++   I    D+    +     +   EP  +    P +L NG  GI  
Sbjct: 359 AAAARYIYTELNKLTRKIFHPADDPLYKYIQEDEKT-VEPEWYLPILPMILVNGAEGIGT 417

Query: 186 GMATSIPSHNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRL 245
           G +T IP  N  EI +    L+++ E  +E++  +  G       I              
Sbjct: 418 GWSTYIPPFNPLEIIKNIRHLMNDEE--LEQMHPWFRGWTGTIEEI-------------- 461

Query: 246 GRGGFRVRARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKR--IPLLEDIRD 303
               +R+  R        G   + +TE+P +   S + E +   +       P ++D+ +
Sbjct: 462 EPLRYRMYGRI----EQIGDNVLEITELPARTWTSTIKEYLLLGLSGNDKIKPWIKDMEE 517

Query: 304 ESAEDVRIVLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSM-GRVPQVMPLDGILK 362
           +  ++++ ++      +     +        +     +NM      G++ +   ++ IL 
Sbjct: 518 QHDDNIKFIITLSPEEMAKTRKIGFYERFKLISPISLMNMVAFDPHGKIKKYNSVNEILS 577

Query: 363 EWLAHRREVLFRRSSFRMQAIDRRVEILKG------------LLIAYLNIDEIIAIIRNE 410
           E+   R E   +R     + +   VE                L +     + II  + N 
Sbjct: 578 EFYYVRLEYYQKRKDHMSERLQWEVEKYSFQVKFIKMIIEKELTVTNKPRNAIIQELENL 637

Query: 411 DKPK----------------------------------------PVMVSRFSLTENQVDA 430
             P+                                          +++         + 
Sbjct: 638 GFPRFNKEGKPYYGSPNDEIAEQINDVKGATSDEEDEESSHEDTENVINGPEELYGTYEY 697

Query: 431 ILNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLN-SGKQQWNQIACEIREVKEIFSK 488
           +L +R+ SL K    ++  +      E   +++LL  S K  WN    +++  +  + +
Sbjct: 698 LLGMRIWSLTKERYQKLLKQKQEKETE---LENLLKLSAKDIWNT---DLKAFEVGYQE 750

SCOP domain information

class: Multi-domain proteins (alpha and beta)
fold: Type II DNA topoisomerase
superfamily: Type II DNA topoisomerase
family: Type II DNA topoisomerase
domain: DNA topoisomerase II, C-terminal fragment (residues 410-1202)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]