HHsearch alignment for GI: 254780355 and conserved domain: cd06116

>cd06116 CaCS_like Chloroflexus aurantiacus (Ca) citrate synthase (CS)_like. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). This group is similar to gram-negative Escherichia coli (Ec) CS (type II, gltA) and Arabidopsis thaliana (Ath) peroxisomal (Per) CS. However EcCS and AthPerCS are not found in this group. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. There are two types of CSs: type I CS and type II CSs. Type I CSs are found in eukarya, gram-positive bacteria, archaea, and in some gram-negative bacteria and are homodimers w
Probab=100.00  E-value=0  Score=1040.24  Aligned_cols=384  Identities=56%  Similarity=0.979  Sum_probs=376.5

Q ss_pred             CEEEECCCCCCEEEEEEEEEEEECCCCEEEECCEEHHHHHHHCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCHHH
Q ss_conf             61898888786238787565433447778989931999975089899999998187999899999999886406899899
Q gi|254780355|r   38 GIFTYDPAFSSTASCKSKITFIDGNNGILLYRGYPIEQLSEKSDFLEVCYLLLHGELANVSQQKDFNDKISRHALLNENM  117 (429)
Q Consensus        38 G~~~~dpG~~~ta~ceS~IT~IDG~~G~L~YRGY~IedLa~~~sFeEVayLLl~GeLPt~~el~~F~~~l~~~~~lpe~v  117 (429)
T Consensus         1 G~~~~dPGl~~~~~~eT~Is~iDg~~G~L~YRGy~I~dLa~~~sfeEvayLLl~G~LPt~~el~~f~~~l~~~~~l~~~v   80 (384)
T cd06116           1 GLMTYDPAYLNTASCKSAITYIDGEKGILRYRGYPIEQLAEQSSYLEVAYLLLHGELPTKERLAQWVYDITRHTMTHENL   80 (384)
T ss_pred             CCEECCCCCCCCEEEEEECEEEECCCCEEEECCEEHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHHH
T ss_conf             96304787687216876683586898779888835999861499999999997798949999999999999854797789


Q ss_pred             HHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHH
Q ss_conf             99998512476525789999999875206855767878898889999999999999999972798534888642468877
Q gi|254780355|r  118 SRFFMGFPSSAHPMAMLVSAVGALSSFYYSPSGVQDLEQCVNVSLRMIAKISTIAAMIYKYSIGQPFVYPRSDLDYASNF  197 (429)
Q Consensus       118 ~~~i~~~p~~ahPM~~L~~~vsaL~a~~~~~~~~~d~~~~~~~a~rLiA~~p~i~A~~yr~~~G~~~i~Pd~~lsyaeNf  197 (429)
T Consensus        81 ~~~i~~~p~~~hPM~~L~~~vsal~~~~~~~~~~~~~~~~~~~~~rliA~~p~i~A~~~r~~~g~~~~~pd~~ls~a~Nf  160 (384)
T cd06116          81 KKFMDGFRYDAHPMGILISSVAALSTFYPEAKNIGDEEQRNKQIIRLIGKMPTIAAFAYRHRLGLPYVLPDNDLSYTGNF  160 (384)
T ss_pred             HHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHH
T ss_conf             99983588888947889999999985185444689978889999999999999999999996699977889874789999


Q ss_pred             HHHHCCCCCCCCCCCHHHHHHHHHHHHEECCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf             87642898410147969999987563501367876301555544205654246776755421002220352899999862
Q gi|254780355|r  198 LHMCFSVPCAEYQVNPLLARAMNRIFILHADHEQNASTSTVRLAGSSGADPFACIAAGVACLGGRAHGGANEEALNMLME  277 (429)
Q Consensus       198 L~Ml~~~~~~~~~~~~~~~~ald~~LILhADHe~NaSTft~R~vaSt~adlysai~agi~aL~GPlHGGAne~v~~ml~~  277 (429)
T Consensus       161 L~Ml~~~~~~~~~p~~~~~~~ld~~LiLhADHe~NaSTftarvvaST~sD~ysai~aaI~aL~GPLHGGAne~v~~ml~e  240 (384)
T cd06116         161 LSMLFKMTEPKYEPNPVLAKALDVLFILHADHEQNCSTSAMRSVGSSRADPYTAVAAAVAALYGPLHGGANEAVLRMLQQ  240 (384)
T ss_pred             HHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
T ss_conf             99970787766789989999999999997147776567888887615888899999999864788777889999999999


Q ss_pred             CCCCCHHHHHHHHHHHCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             15535127999999821478614302774355554034689999999888608776517999999999996115314579
Q gi|254780355|r  278 IGSLERIPHYIMRAKDKNDPFRIMGFGHRVYRNHDPRCRIMRETMYEVLEVTGRFNDPIAQVAIELERIALEDEYFIERK  357 (429)
Q Consensus       278 I~~~~~v~~~i~~~~~~~~~~ri~GfGHrvyk~~DPRa~~l~~~~~~l~~~~~~~~~~~~~~a~~le~~a~~d~~~~~r~  357 (429)
T Consensus       241 I~~~~~v~~~v~~~~~~~~--rimGfGHrVYk~~DPRa~ilk~~~~~l~~~~~--~~~~~~~a~~ie~~~~~~~~~~~k~  316 (384)
T cd06116         241 IGSPKNIPDFIETVKQGKE--RLMGFGHRVYKNYDPRARIIKKIADEVFEATG--RNPLLDIAVELEKIALEDEYFISRK  316 (384)
T ss_pred             HCCCCCHHHHHHHHHHCCC--CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf             6794208999999984788--65677887688899268999999999998628--7727899999999998877445689


Q ss_pred             CCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCH
Q ss_conf             87784478899999849996685899999999899999999970789830045621058876870685
Q gi|254780355|r  358 LYPNVDFYSGITLRALGFPTNLFTVLFAVARTAGWVSQWTEMIVDPSRRIGRPRQLYTGALKRDYVPL  425 (429)
Q Consensus       358 l~pNvDfysg~i~~~lGip~~~ft~iFa~~R~~Gw~AH~~Eq~~~~~~ri~RP~~~Y~G~~~r~y~pi  425 (429)
T Consensus       317 l~pNVDfysg~l~~~lGip~~~fT~iFa~sR~~GW~AH~~E~~~~~~~riiRP~~~Y~G~~~r~y~Pi  384 (384)
T cd06116         317 LYPNVDFYSGLIYQALGFPTEAFTVLFAIPRTSGWLAQWIEMLRDPEQKIARPRQVYTGPRDRDYVPI  384 (384)
T ss_pred             CCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCCCCCCC
T ss_conf             88781048999999819893666799999999999999999982878864288752139899998889