HHsearch alignment for GI: 254780355 and conserved domain: cd06116
>cd06116 CaCS_like Chloroflexus aurantiacus (Ca) citrate synthase (CS)_like. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). This group is similar to gram-negative Escherichia coli (Ec) CS (type II, gltA) and Arabidopsis thaliana (Ath) peroxisomal (Per) CS. However EcCS and AthPerCS are not found in this group. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. There are two types of CSs: type I CS and type II CSs. Type I CSs are found in eukarya, gram-positive bacteria, archaea, and in some gram-negative bacteria and are homodimers w
Probab=100.00 E-value=0 Score=1040.24 Aligned_cols=384 Identities=56% Similarity=0.979 Sum_probs=376.5
Q ss_pred CEEEECCCCCCEEEEEEEEEEEECCCCEEEECCEEHHHHHHHCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCHHH
Q ss_conf 61898888786238787565433447778989931999975089899999998187999899999999886406899899
Q gi|254780355|r 38 GIFTYDPAFSSTASCKSKITFIDGNNGILLYRGYPIEQLSEKSDFLEVCYLLLHGELANVSQQKDFNDKISRHALLNENM 117 (429)
Q Consensus 38 G~~~~dpG~~~ta~ceS~IT~IDG~~G~L~YRGY~IedLa~~~sFeEVayLLl~GeLPt~~el~~F~~~l~~~~~lpe~v 117 (429)
T Consensus 1 G~~~~dPGl~~~~~~eT~Is~iDg~~G~L~YRGy~I~dLa~~~sfeEvayLLl~G~LPt~~el~~f~~~l~~~~~l~~~v 80 (384)
T cd06116 1 GLMTYDPAYLNTASCKSAITYIDGEKGILRYRGYPIEQLAEQSSYLEVAYLLLHGELPTKERLAQWVYDITRHTMTHENL 80 (384)
T ss_pred CCEECCCCCCCCEEEEEECEEEECCCCEEEECCEEHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHHH
T ss_conf 96304787687216876683586898779888835999861499999999997798949999999999999854797789
Q ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHH
Q ss_conf 99998512476525789999999875206855767878898889999999999999999972798534888642468877
Q gi|254780355|r 118 SRFFMGFPSSAHPMAMLVSAVGALSSFYYSPSGVQDLEQCVNVSLRMIAKISTIAAMIYKYSIGQPFVYPRSDLDYASNF 197 (429)
Q Consensus 118 ~~~i~~~p~~ahPM~~L~~~vsaL~a~~~~~~~~~d~~~~~~~a~rLiA~~p~i~A~~yr~~~G~~~i~Pd~~lsyaeNf 197 (429)
T Consensus 81 ~~~i~~~p~~~hPM~~L~~~vsal~~~~~~~~~~~~~~~~~~~~~rliA~~p~i~A~~~r~~~g~~~~~pd~~ls~a~Nf 160 (384)
T cd06116 81 KKFMDGFRYDAHPMGILISSVAALSTFYPEAKNIGDEEQRNKQIIRLIGKMPTIAAFAYRHRLGLPYVLPDNDLSYTGNF 160 (384)
T ss_pred HHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHH
T ss_conf 99983588888947889999999985185444689978889999999999999999999996699977889874789999
Q ss_pred HHHHCCCCCCCCCCCHHHHHHHHHHHHEECCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf 87642898410147969999987563501367876301555544205654246776755421002220352899999862
Q gi|254780355|r 198 LHMCFSVPCAEYQVNPLLARAMNRIFILHADHEQNASTSTVRLAGSSGADPFACIAAGVACLGGRAHGGANEEALNMLME 277 (429)
Q Consensus 198 L~Ml~~~~~~~~~~~~~~~~ald~~LILhADHe~NaSTft~R~vaSt~adlysai~agi~aL~GPlHGGAne~v~~ml~~ 277 (429)
T Consensus 161 L~Ml~~~~~~~~~p~~~~~~~ld~~LiLhADHe~NaSTftarvvaST~sD~ysai~aaI~aL~GPLHGGAne~v~~ml~e 240 (384)
T cd06116 161 LSMLFKMTEPKYEPNPVLAKALDVLFILHADHEQNCSTSAMRSVGSSRADPYTAVAAAVAALYGPLHGGANEAVLRMLQQ 240 (384)
T ss_pred HHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
T ss_conf 99970787766789989999999999997147776567888887615888899999999864788777889999999999
Q ss_pred CCCCCHHHHHHHHHHHCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 15535127999999821478614302774355554034689999999888608776517999999999996115314579
Q gi|254780355|r 278 IGSLERIPHYIMRAKDKNDPFRIMGFGHRVYRNHDPRCRIMRETMYEVLEVTGRFNDPIAQVAIELERIALEDEYFIERK 357 (429)
Q Consensus 278 I~~~~~v~~~i~~~~~~~~~~ri~GfGHrvyk~~DPRa~~l~~~~~~l~~~~~~~~~~~~~~a~~le~~a~~d~~~~~r~ 357 (429)
T Consensus 241 I~~~~~v~~~v~~~~~~~~--rimGfGHrVYk~~DPRa~ilk~~~~~l~~~~~--~~~~~~~a~~ie~~~~~~~~~~~k~ 316 (384)
T cd06116 241 IGSPKNIPDFIETVKQGKE--RLMGFGHRVYKNYDPRARIIKKIADEVFEATG--RNPLLDIAVELEKIALEDEYFISRK 316 (384)
T ss_pred HCCCCCHHHHHHHHHHCCC--CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 6794208999999984788--65677887688899268999999999998628--7727899999999998877445689
Q ss_pred CCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCH
Q ss_conf 87784478899999849996685899999999899999999970789830045621058876870685
Q gi|254780355|r 358 LYPNVDFYSGITLRALGFPTNLFTVLFAVARTAGWVSQWTEMIVDPSRRIGRPRQLYTGALKRDYVPL 425 (429)
Q Consensus 358 l~pNvDfysg~i~~~lGip~~~ft~iFa~~R~~Gw~AH~~Eq~~~~~~ri~RP~~~Y~G~~~r~y~pi 425 (429)
T Consensus 317 l~pNVDfysg~l~~~lGip~~~fT~iFa~sR~~GW~AH~~E~~~~~~~riiRP~~~Y~G~~~r~y~Pi 384 (384)
T cd06116 317 LYPNVDFYSGLIYQALGFPTEAFTVLFAIPRTSGWLAQWIEMLRDPEQKIARPRQVYTGPRDRDYVPI 384 (384)
T ss_pred CCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCCCCCCC
T ss_conf 88781048999999819893666799999999999999999982878864288752139899998889