HHsearch alignment for GI: 254780355 and conserved domain: cd06118

>cd06118 citrate_synt_like_1 Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle). Peroxisomal CS is involved in the glyoxylate cycle. This group also includes CS proteins which functions as a 2-methylcitrate synthase (2MCS). 2MCS catalyzes the condensation of propionyl-CoA (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. This group contains proteins which functions exclusively as either a CS or a 2MCS, as well as those with relaxed specificity which have dual functions as both a CS and a 2MCS. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and
Probab=100.00  E-value=0  Score=876.48  Aligned_cols=358  Identities=46%  Similarity=0.743  Sum_probs=344.8

Q ss_pred             CCCCCEEEEEEEEEEEECCCCEEEECCEEHHHHHHHCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf             88786238787565433447778989931999975089899999998187999899999999886406899899999985
Q gi|254780355|r   44 PAFSSTASCKSKITFIDGNNGILLYRGYPIEQLSEKSDFLEVCYLLLHGELANVSQQKDFNDKISRHALLNENMSRFFMG  123 (429)
Q Consensus        44 pG~~~ta~ceS~IT~IDG~~G~L~YRGY~IedLa~~~sFeEVayLLl~GeLPt~~el~~F~~~l~~~~~lpe~v~~~i~~  123 (429)
T Consensus         1 pGl~gv~~~~t~is~id~~~G~L~YRG~~i~dLa~~~~fEeva~LL~~G~lP~~~el~~f~~~l~~~~~lp~~v~~~l~~   80 (358)
T cd06118           1 PGLEGVKAKETSISYIDGDEGILRYRGYDIEELAEKSSFEEVAYLLLYGKLPTKEELAEFKKKLASHRALPEHVVEILDL   80 (358)
T ss_pred             CCCCCCCEEEEECEEEECCCCEEEECCEEHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf             99898733467570686898879888904999860599999999997898979999999999999844675999999996


Q ss_pred             HCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCC
Q ss_conf             12476525789999999875206855767878898889999999999999999972798534888642468877876428
Q gi|254780355|r  124 FPSSAHPMAMLVSAVGALSSFYYSPSGVQDLEQCVNVSLRMIAKISTIAAMIYKYSIGQPFVYPRSDLDYASNFLHMCFS  203 (429)
Q Consensus       124 ~p~~ahPM~~L~~~vsaL~a~~~~~~~~~d~~~~~~~a~rLiA~~p~i~A~~yr~~~G~~~i~Pd~~lsyaeNfL~Ml~~  203 (429)
T Consensus        81 ~p~~~~pm~~l~~~v~~l~~~~~~~~~-~~~~~~~~~a~~lia~~p~i~a~~~~~~~g~~~~~p~~~~~~a~nfl~ml~g  159 (358)
T cd06118          81 LPKNAHPMDVLRTAVSALGSFDPFARD-KSPEARYEKAIRLIAKLPTIAANIYRNREGLEIIAPDPDLSYAENFLYMLFG  159 (358)
T ss_pred             CCCCCCHHHHHHHHHHHHHHCCCCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCC
T ss_conf             257865488999999998732865446-9989999999998625889999999995699887889415399999997538


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHEECCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCH
Q ss_conf             98410147969999987563501367876301555544205654246776755421002220352899999862155351
Q gi|254780355|r  204 VPCAEYQVNPLLARAMNRIFILHADHEQNASTSTVRLAGSSGADPFACIAAGVACLGGRAHGGANEEALNMLMEIGSLER  283 (429)
Q Consensus       204 ~~~~~~~~~~~~~~ald~~LILhADHe~NaSTft~R~vaSt~adlysai~agi~aL~GPlHGGAne~v~~ml~~I~~~~~  283 (429)
T Consensus       160 ~-----~~~~~~~~~l~~~LiL~ADHe~NaSTfa~RvvaSt~ad~ysav~agl~aL~GPlHGgAn~~v~~~l~~i~~~~~  234 (358)
T cd06118         160 E-----EPDPEEAKAMDLALILHADHEGNASTFTARVVASTLSDMYSAIAAAIAALKGPLHGGANEAVLKMLLEIGTPEN  234 (358)
T ss_pred             C-----CCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCHHH
T ss_conf             9-----99999999999989786257887059999999823678899999999981686541578999999999688565


Q ss_pred             HHHHHHHHHHCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf             27999999821478614302774355554034689999999888608776517999999999996115314579877844
Q gi|254780355|r  284 IPHYIMRAKDKNDPFRIMGFGHRVYRNHDPRCRIMRETMYEVLEVTGRFNDPIAQVAIELERIALEDEYFIERKLYPNVD  363 (429)
Q Consensus       284 v~~~i~~~~~~~~~~ri~GfGHrvyk~~DPRa~~l~~~~~~l~~~~~~~~~~~~~~a~~le~~a~~d~~~~~r~l~pNvD  363 (429)
T Consensus       235 ~~~~i~~~l~~~~--~i~GFGHrvYk~~DPRa~~l~~~~~~l~~~~~--~~~~~~~~~~ie~~~~~~--~~~r~l~pNvD  308 (358)
T cd06118         235 VEAYIWKKLANKR--RIMGFGHRVYKTYDPRAKILKELAEELAEEKG--DDKLFEIAEELEEIALEV--LGEKGIYPNVD  308 (358)
T ss_pred             HHHHHHHHHCCCC--CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHHHH--HCCCCCCCCHH
T ss_conf             8999999740467--77787876578899558999999999875038--876999999999999986--47689987739


Q ss_pred             HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf             788999998499966858999999998999999999707898300456210
Q gi|254780355|r  364 FYSGITLRALGFPTNLFTVLFAVARTAGWVSQWTEMIVDPSRRIGRPRQLY  414 (429)
Q Consensus       364 fysg~i~~~lGip~~~ft~iFa~~R~~Gw~AH~~Eq~~~~~~ri~RP~~~Y  414 (429)
T Consensus       309 fy~~~l~~~lgip~~~~t~lFa~aR~~Gw~AH~~Eq~~~~-~kiiRP~~~Y  358 (358)
T cd06118         309 FYSGVVYKALGFPTELFTPLFAVSRAVGWLAHIIEYRENN-QRLIRPRAEY  358 (358)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCCCCCCCCC
T ss_conf             8999999993979566789999999999999999999679-9844888879