HHsearch results for GI: 254780355 and protein with PDBid: 1iom_A
>1iom_A Citrate synthase; open form, riken structural genomics/proteomics initiative, RSGI, structural genomics, lyase; 1.50A {Thermus thermophilus HB8} SCOP: a.103.1.1 PDB: 1ixe_A*
Probab=100.00 E-value=0 Score=822.68 Aligned_cols=376 Identities=39% Similarity=0.593 Sum_probs=357.7
Q ss_pred EECCCCCCEEEEEEEEEEEECCCCEEEECCEEHHHHHHHCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCHHHHHH
Q ss_conf 98888786238787565433447778989931999975089899999998187999899999999886406899899999
Q gi|254780355|r 41 TYDPAFSSTASCKSKITFIDGNNGILLYRGYPIEQLSEKSDFLEVCYLLLHGELANVSQQKDFNDKISRHALLNENMSRF 120 (429)
Q Consensus 41 ~~dpG~~~ta~ceS~IT~IDG~~G~L~YRGY~IedLa~~~sFeEVayLLl~GeLPt~~el~~F~~~l~~~~~lpe~v~~~ 120 (429)
.+++|+.++.+|+|+||+|||++|+|+||||||+||+++++||||+||||+|+|||++|+++|+.++.+++.+|+.+.+.
T Consensus 2 ~v~~GL~Gv~v~~s~Is~Idg~~G~L~YRG~~i~dLa~~~sfEeVa~LL~~G~LP~~~el~~f~~~l~~~~~lp~~~~~~ 81 (377)
T 1iom_A 2 EVARGLEGVLFTESRMCYIDGQQGKLYYYGIPIQELAEKSSFEETTFLLLHGRLPRRQELEEFSAALARRRALPAHLLES 81 (377)
T ss_dssp -CCGGGTTCCCSCCSSEEEETTTTEEEETTEEHHHHHHHCCHHHHHHHHHHSSCCCHHHHHHHHHHHHHTCSCCHHHHHH
T ss_pred CCCCCCCCCEEEEEECEEEECCCCEEEECCEEHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHHHHHH
T ss_conf 88988899858564571264888879998914999871499999999997897979999999999999854697788899
Q ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 98512476525789999999875206855767878898889999999999999999972798534888642468877876
Q gi|254780355|r 121 FMGFPSSAHPMAMLVSAVGALSSFYYSPSGVQDLEQCVNVSLRMIAKISTIAAMIYKYSIGQPFVYPRSDLDYASNFLHM 200 (429)
Q Consensus 121 i~~~p~~ahPM~~L~~~vsaL~a~~~~~~~~~d~~~~~~~a~rLiA~~p~i~A~~yr~~~G~~~i~Pd~~lsyaeNfL~M 200 (429)
+..+|+++|||+++++++++|+++++...+ .+++...+.++++||++|++++++||+..|++++.|+++++|++||++|
T Consensus 82 l~~~~~~~~pm~~l~~~vs~l~~~~~~~~~-~~~~~~~~~~~~lia~~~~i~a~~~~~~~g~~~~~p~~~~~~a~~~l~m 160 (377)
T 1iom_A 82 FKRYPVSAHPMSFLRTAVSEFGMLDPTEGD-ISREALYEKGLDLIAKFATIVAANKRLKEGKEPIPPREDLSHAANFLYM 160 (377)
T ss_dssp HTTSCTTSCHHHHHHHHHHHHHHTCTTTTC-CSHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCTTSCHHHHHHHH
T ss_pred HHHCCCCCCHHHHHHHHHHHHHCCCCCCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH
T ss_conf 860788778788999999997254864434-3017899999999987668899999987699776886313499998666
Q ss_pred HCCCCCCCCCCCHHHHHHHHHHHHEECCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCC
Q ss_conf 42898410147969999987563501367876301555544205654246776755421002220352899999862155
Q gi|254780355|r 201 CFSVPCAEYQVNPLLARAMNRIFILHADHEQNASTSTVRLAGSSGADPFACIAAGVACLGGRAHGGANEEALNMLMEIGS 280 (429)
Q Consensus 201 l~~~~~~~~~~~~~~~~ald~~LILhADHe~NaSTft~R~vaSt~adlysai~agi~aL~GPlHGGAne~v~~ml~~I~~ 280 (429)
+++. +++|..+|+||++||||||||+|+||||+|+++||++|+|+||+||+++|+||+||||+|+|++|++++++
T Consensus 161 ~~g~-----~p~~~~~~~l~~~lvl~aDHg~~~st~aaR~~aSt~adl~~av~agl~al~Gp~hGga~~~~~~~l~~~~~ 235 (377)
T 1iom_A 161 ANGV-----EPSPEQARLMDAALILHAEHGFNASTFTAIAAFSTETDLYSAITAAVASLKGPRHGGANEAVMRMIQEIGT 235 (377)
T ss_dssp HHSS-----CCCHHHHHHHHHHHHHHSCCSSCHHHHHHHHHHTTTCCHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHCS
T ss_pred HCCC-----CCCHHHHHHHHHHHHHHCCCCCCCCHHHHHEEECCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCC
T ss_conf 3389-----99989999999878653058887434665000036850889999998613898666576999999998278
Q ss_pred CCHHHHHHHHHHHCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 35127999999821478614302774355554034689999999888608776517999999999996115314579877
Q gi|254780355|r 281 LERIPHYIMRAKDKNDPFRIMGFGHRVYRNHDPRCRIMRETMYEVLEVTGRFNDPIAQVAIELERIALEDEYFIERKLYP 360 (429)
Q Consensus 281 ~~~v~~~i~~~~~~~~~~ri~GfGHrvyk~~DPRa~~l~~~~~~l~~~~~~~~~~~~~~a~~le~~a~~d~~~~~r~l~p 360 (429)
+++++++|.+.+.+++ |||||||||||.+|||+.+|+++++++.+..+ ..++++++.++|+++ ++++..|+|+|
T Consensus 236 ~~~~~~~v~~~~~~~~--~i~GFGH~vy~~~DPRa~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~--~~~~~~r~l~p 309 (377)
T 1iom_A 236 PERAREWVREKLAKKE--RIMGMGHRVYKAFDPRAGVLEKLARLVAEKHG--HSKEYQILKIVEEEA--GKVLNPRGIYP 309 (377)
T ss_dssp HHHHHHHHHHHHHTTC--CCTTBSCSSCSSCCTTHHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHH--HHHHTTTTCCB
T ss_pred CCCHHHHHHHHHHCCC--CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHH--HHHHCCCCCCC
T ss_conf 4318999999996899--88878986356899649999999999987528--730589999999877--88514689885
Q ss_pred CCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHCC
Q ss_conf 844788999998499966858999999998999999999707898300456210588768706855429
Q gi|254780355|r 361 NVDFYSGITLRALGFPTNLFTVLFAVARTAGWVSQWTEMIVDPSRRIGRPRQLYTGALKRDYVPLEERE 429 (429)
Q Consensus 361 NvDfysg~i~~~lGip~~~ft~iFa~~R~~Gw~AH~~Eq~~~~~~ri~RP~~~Y~G~~~r~y~pi~~R~ 429 (429)
|||||+|++|+.||||+++||++|++||++||+|||+||++. ++||+|||++|||+.+|+||||++||
T Consensus 310 Nvd~~~~~l~~~lG~p~~~~~~lf~i~R~~Gw~AH~~E~~~~-~~~l~RPr~~Y~G~~~~~y~p~~~R~ 377 (377)
T 1iom_A 310 NVDFYSGVVYSDLGFSLEFFTPIFAVARISGWVGHILEYQEL-DNRLLRPGAKYVGELDVPYVPLEARE 377 (377)
T ss_dssp CHHHHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHHHHHHHHH-TCCCCCCCCCCCSCSSCCCCCGGGC-
T ss_pred CHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCCCCCCCCCCCCCCCCCCCHHHCC
T ss_conf 879999999998498834443999999999999999999845-79964877500699999987845377