HHsearch results for GI: 254780355 and protein with PDBid: 1vgm_A
>1vgm_A 378AA long hypothetical citrate synthase; open form, transferase; 2.00A {Sulfolobus tokodaii}
Probab=100.00 E-value=0 Score=773.87 Aligned_cols=373 Identities=35% Similarity=0.576 Sum_probs=343.6
Q ss_pred ECCCCCCEEEEEEEEEEEECCCCEEEECCEEHHHHHHHCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHH
Q ss_conf 88887862387875654334477789899319999750898999999981879998999999998864068998999999
Q gi|254780355|r 42 YDPAFSSTASCKSKITFIDGNNGILLYRGYPIEQLSEKSDFLEVCYLLLHGELANVSQQKDFNDKISRHALLNENMSRFF 121 (429)
Q Consensus 42 ~dpG~~~ta~ceS~IT~IDG~~G~L~YRGY~IedLa~~~sFeEVayLLl~GeLPt~~el~~F~~~l~~~~~lpe~v~~~i 121 (429)
+.+||.||.+++|+||+|||++|+|+||||+|+||+++++||||+||||+|+|||++|+++|+.++.+++.+|+++.+.+
T Consensus 5 ~~~GL~gv~v~~T~Is~id~~~G~L~YRG~~i~dLa~~~sfEeVa~LL~~G~lP~~~el~~~~~~l~~~~~lp~~~~~~~ 84 (378)
T 1vgm_A 5 VSRGLENVIIKTTGLTYIDGINGILRYRGYDINDLVNYASYEELIHLMLYGELPNRQQLNQIKGIINESFEVPEQVISTI 84 (378)
T ss_dssp CSGGGTTCEEEEESSEEEETTTTEEEETTEEHHHHHHHCCHHHHHHHHHHSSCCCHHHHHHHHHHHHTCCCCCHHHHHHH
T ss_pred CCCCCCCCEEEEEECCCEECCCCEEEECCEEHHHHHCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHH
T ss_conf 68888997374777840758898899989539998616999999999977979699999999999987078979999999
Q ss_pred HHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 85124765257899999998752068557678788988899999999999999999727985348886424688778764
Q gi|254780355|r 122 MGFPSSAHPMAMLVSAVGALSSFYYSPSGVQDLEQCVNVSLRMIAKISTIAAMIYKYSIGQPFVYPRSDLDYASNFLHMC 201 (429)
Q Consensus 122 ~~~p~~ahPM~~L~~~vsaL~a~~~~~~~~~d~~~~~~~a~rLiA~~p~i~A~~yr~~~G~~~i~Pd~~lsyaeNfL~Ml 201 (429)
..+|+++|||++++++++.+++.++...+. +...+...++++++|+|++++||+..|.++..|++++++++||++|+
T Consensus 85 ~~~~~~~~pm~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~l~a~~~~i~a~~~~~~~g~~~~~p~~~~~~~~~~l~~~ 161 (378)
T 1vgm_A 85 FSMPRNCDAIGMMETAFGILASIYDPKWNR---ATNKELAVQIIAKTATITANIYRAKEGLKPKIPEPSESYAESFLAAT 161 (378)
T ss_dssp TTSCTTSCHHHHHHHHHHHHHHHHCCCCCT---TTHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCCCSCHHHHHHHHH
T ss_pred HHCCCCCCCHHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 827765683788888888765320210222---34678999987551899999999867997668963237899999985
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHEECCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCC
Q ss_conf 28984101479699999875635013678763015555442056542467767554210022203528999998621553
Q gi|254780355|r 202 FSVPCAEYQVNPLLARAMNRIFILHADHEQNASTSTVRLAGSSGADPFACIAAGVACLGGRAHGGANEEALNMLMEIGSL 281 (429)
Q Consensus 202 ~~~~~~~~~~~~~~~~ald~~LILhADHe~NaSTft~R~vaSt~adlysai~agi~aL~GPlHGGAne~v~~ml~~I~~~ 281 (429)
++. ++++..+++||++||||||||+|+|||++|+++||++|+|+|++||+++|+||+|||||++|++|++++++.
T Consensus 162 ~g~-----~p~~~~~~~l~~~Lil~aDHg~n~St~a~R~~ast~ad~~~~v~agl~~l~G~~hgga~~~~~~~~~~~~~~ 236 (378)
T 1vgm_A 162 FGK-----KPTQEEIKAMDASLILYTDHEVPASTTAALVASSTLSDMYSCIVAALAALKGPLHGGAAEEAFKQFVEIGSV 236 (378)
T ss_dssp HSS-----CCCHHHHHHHHHHHHHTSCCSCCHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTTSCHHHHHHHHHHHHCSG
T ss_pred CCC-----CCCHHHHHHHHHHHHHHCCCCCCCCCHHHEEEECCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCC
T ss_conf 699-----998899999999987841378774022211222268417788886653124775545699999999972354
Q ss_pred CHHHHHHHHH-HHCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 5127999999-821478614302774355554034689999999888608776517999999999996115314579877
Q gi|254780355|r 282 ERIPHYIMRA-KDKNDPFRIMGFGHRVYRNHDPRCRIMRETMYEVLEVTGRFNDPIAQVAIELERIALEDEYFIERKLYP 360 (429)
Q Consensus 282 ~~v~~~i~~~-~~~~~~~ri~GfGHrvyk~~DPRa~~l~~~~~~l~~~~~~~~~~~~~~a~~le~~a~~d~~~~~r~l~p 360 (429)
++.+.++.+. +++++ |||||||||||..|||+++|+++++++....+ ...++++++.++|+++ .+++.+|+|+|
T Consensus 237 ~~~~~~~~~~~~~~~~--~ipGfGH~vy~~~DPRa~~L~~~~~~~~~~~~-~~~~~~~l~~~~~~~~--~~~~~~k~l~p 311 (378)
T 1vgm_A 237 ENADKWFEEKIIKGKS--RLMGFGHRVYKTYDPRAKIFKTLAKSFAEKNE-NVKKYYEIAERIEKLG--VDTFGSKHIYP 311 (378)
T ss_dssp GGHHHHHHHHTTTSCC--CCTTBCCSSCSSCCHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHHHH--HHHHGGGTCCB
T ss_pred CCHHHHHHHHHHCCCC--CCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHH--HHHHCCCCCCC
T ss_conf 2426788777641566--45377875357899769999999999886445-3068999999999999--98503579872
Q ss_pred CCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHC
Q ss_conf 84478899999849996685899999999899999999970789830045621058876870685542
Q gi|254780355|r 361 NVDFYSGITLRALGFPTNLFTVLFAVARTAGWVSQWTEMIVDPSRRIGRPRQLYTGALKRDYVPLEER 428 (429)
Q Consensus 361 NvDfysg~i~~~lGip~~~ft~iFa~~R~~Gw~AH~~Eq~~~~~~ri~RP~~~Y~G~~~r~y~pi~~R 428 (429)
|||||+|++|+.+|||+++||++|++||++||+|||+||++++ +||+||+++||||.+|+|+||++|
T Consensus 312 Nvd~~~~~l~~~lG~p~~~~~~lf~i~R~~Gw~AH~~Eq~~~~-~~l~RP~~~Y~G~~~r~~~~~~~r 378 (378)
T 1vgm_A 312 NTDFYSGIVFYALGFPIYMFTSLFALSRVLGWLAHIIEYVEEQ-HRLIRPRALYIGPEKREFKPIELR 378 (378)
T ss_dssp CTTTTHHHHHHHTTCCGGGHHHHHHHHHHHHHHHHHHHHHHHS-CCCCCCEEEECSCCCCCCCCGGGC
T ss_pred CHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCCCCCCCEECCCCCCCCCCCCCC
T ss_conf 7799999999994959453108999999999999999998568-996485542049999999771239