HHsearch results for GI: 254780355 and protein with PDBid: 1vgp_A
>1vgp_A 373AA long hypothetical citrate synthase; open form, transferase; 2.70A {Sulfolobus tokodaii}
Probab=100.00 E-value=0 Score=815.76 Aligned_cols=371 Identities=37% Similarity=0.605 Sum_probs=351.5
Q ss_pred ECCCCCCEEEEEEEEEEEECCCCEEEECCEEHHHHHHHCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHH
Q ss_conf 88887862387875654334477789899319999750898999999981879998999999998864068998999999
Q gi|254780355|r 42 YDPAFSSTASCKSKITFIDGNNGILLYRGYPIEQLSEKSDFLEVCYLLLHGELANVSQQKDFNDKISRHALLNENMSRFF 121 (429)
Q Consensus 42 ~dpG~~~ta~ceS~IT~IDG~~G~L~YRGY~IedLa~~~sFeEVayLLl~GeLPt~~el~~F~~~l~~~~~lpe~v~~~i 121 (429)
++||+.||.+|+|+||+|||++|+|+||||+|+||+++++||||+||||+|+|||++|+++|+.++.+++.+|+.+.+.+
T Consensus 3 ~~~GL~gv~v~~T~Is~idg~~G~L~YRG~~i~dLa~~~sfEeva~LL~~G~lP~~~el~~f~~~l~~~~~lp~~~~~~~ 82 (373)
T 1vgp_A 3 IKKGLEDVYVKETEITYIDGELGRLYYRGYSIYDLAEFSNFEEVSYLILYGKLPNREELNWFQEKLREERYLPDFIIKFL 82 (373)
T ss_dssp CCTTCTTCCCCCCSSEEEETTTTEEEETTEEHHHHHHHCCHHHHHHHHHHSSCCCHHHHHHHHHHHHHTCCCCHHHHHHH
T ss_pred CCCCCCCCCEEEEECCEEECCCCEEEECCEEHHHHHCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHH
T ss_conf 79878997150577914758988799978549998526999999999984879899999999999997179998899877
Q ss_pred HHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 85124765257899999998752068557678788988899999999999999999727985348886424688778764
Q gi|254780355|r 122 MGFPSSAHPMAMLVSAVGALSSFYYSPSGVQDLEQCVNVSLRMIAKISTIAAMIYKYSIGQPFVYPRSDLDYASNFLHMC 201 (429)
Q Consensus 122 ~~~p~~ahPM~~L~~~vsaL~a~~~~~~~~~d~~~~~~~a~rLiA~~p~i~A~~yr~~~G~~~i~Pd~~lsyaeNfL~Ml 201 (429)
+.+|+++|||++|++++++|++++++.. +...+.+.+++|++|+|++++|++..|.+++.|+++++|++||++|+
T Consensus 83 ~~~~~~~~pm~~l~~~~s~l~~~~~~~~-----~~~~~~~~~l~a~~~~i~a~~~~~~~g~~~~~~~~~~~~~~~~l~~~ 157 (373)
T 1vgp_A 83 REVRKDAQPMDILRTAVSLLGIEDSKND-----ERTDIKGIKLISKFPTIVANYARLRKGLDIIEPDPKLSHSENFLYML 157 (373)
T ss_dssp HHSCTTSCHHHHHHHHHHHHHHHCCCCS-----SCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCTTSCHHHHHHHHH
T ss_pred HCCCCCCCHHHHHHHHHHHHHCCCCCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCC
T ss_conf 4156668869999999998641121232-----17799999999899999999999846998888997658999987304
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHEECCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCC
Q ss_conf 28984101479699999875635013678763015555442056542467767554210022203528999998621553
Q gi|254780355|r 202 FSVPCAEYQVNPLLARAMNRIFILHADHEQNASTSTVRLAGSSGADPFACIAAGVACLGGRAHGGANEEALNMLMEIGSL 281 (429)
Q Consensus 202 ~~~~~~~~~~~~~~~~ald~~LILhADHe~NaSTft~R~vaSt~adlysai~agi~aL~GPlHGGAne~v~~ml~~I~~~ 281 (429)
++. ++++..+++||++||||||||+|+||||+|+++||++|+|+|++||+++|+||+|||||++|++|+++|+++
T Consensus 158 ~g~-----~~~~~~~~~ld~~LIL~aDHg~n~STfaaR~~aSt~~d~~~~v~aal~al~Gp~hGga~~~~~~~l~~i~~~ 232 (373)
T 1vgp_A 158 YGD-----RPNEIKSKAMDVTLILHIDHEMNASTFASLVVASTFSDLYSSIVAGISALKGPLHGGANYEALKMFKEIGSP 232 (373)
T ss_dssp HSS-----CCCHHHHHHHHHHHHTTSCCSCCHHHHHHHHHHTTTCCHHHHHHHHHHHHTCTTSSSCCCHHHHHHHHSCSS
T ss_pred CCC-----CCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHC
T ss_conf 689-----999899999998887753578973158898886068708899999999728986566699999999998622
Q ss_pred CHHHHHHHHHHHCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 51279999998214786143027743555540346899999998886087765179999999999961153145798778
Q gi|254780355|r 282 ERIPHYIMRAKDKNDPFRIMGFGHRVYRNHDPRCRIMRETMYEVLEVTGRFNDPIAQVAIELERIALEDEYFIERKLYPN 361 (429)
Q Consensus 282 ~~v~~~i~~~~~~~~~~ri~GfGHrvyk~~DPRa~~l~~~~~~l~~~~~~~~~~~~~~a~~le~~a~~d~~~~~r~l~pN 361 (429)
+++++++.+.+.+++ |||||||||||..|||+++|+++++++....+....++++++.++++++ ++++.+|+++||
T Consensus 233 ~~~~~~~~~~~~~~~--~i~GfGH~vy~~~DPRa~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~k~l~pN 308 (373)
T 1vgp_A 233 EKVNDYILNRLSNKQ--RIMGFGHRVYKTYDPRARILKQYAKLLAEKEGGEIYTLYQIAEKVEEIG--IKYLGPKGIYPN 308 (373)
T ss_dssp SSHHHHHHHHHHTTC--CCTTBCCSSCSSCCHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH--HHHHGGGTCCBC
T ss_pred CCHHHHHHHHHHCCC--CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH--HHHCCCCCCCCC
T ss_conf 244999999997799--7767786536678967799999999998873564206899999999999--986067899827
Q ss_pred CCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHC
Q ss_conf 4478899999849996685899999999899999999970789830045621058876870685542
Q gi|254780355|r 362 VDFYSGITLRALGFPTNLFTVLFAVARTAGWVSQWTEMIVDPSRRIGRPRQLYTGALKRDYVPLEER 428 (429)
Q Consensus 362 vDfysg~i~~~lGip~~~ft~iFa~~R~~Gw~AH~~Eq~~~~~~ri~RP~~~Y~G~~~r~y~pi~~R 428 (429)
||||+|++|+.+|||+++||++|++||++||+|||+||+++ +||+||+++|||+.+|+||||++|
T Consensus 309 vD~~~~~l~~~lGip~~~~~~lf~~~R~~Gw~AH~~Eq~~~--~~liRP~~~YvG~~~r~~~~i~~R 373 (373)
T 1vgp_A 309 VDFFSSIVFYSLGFEPDFFPAVFASARVVGWVAHIMEYIKD--NKIIRPKAYYKGEIGKKYIPIDSR 373 (373)
T ss_dssp HHHHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHHHHHHGGG--CCCCCCCCCCCSCCCCCCCCSTTC
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCCCCCCEECCCCCCCCCCCCCC
T ss_conf 39899999998097967765999999999999999999747--996277642128999999771129