Query gi|254780355|ref|YP_003064768.1| type II citrate synthase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 429
No_of_seqs 205 out of 1887
Neff 6.1
Searched_HMMs 23785
Date Mon May 30 09:36:31 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780355.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2h12_A Citrate synthase; acido 100.0 0 0 1082.4 43.3 425 4-428 11-436 (436)
2 3msu_A Citrate synthase; helix 100.0 0 0 1053.7 44.4 417 1-422 9-427 (427)
3 1k3p_A Citrate synthase; trans 100.0 0 0 1000.3 32.0 425 2-428 1-426 (426)
4 2ibp_A Citrate synthase; disul 100.0 0 0 861.5 37.8 397 1-428 1-409 (409)
5 1csh_A Citrate synthase; lyase 100.0 0 0 860.1 29.9 370 37-422 31-432 (435)
6 1iom_A Citrate synthase; open 100.0 0 0 822.7 38.3 376 41-429 2-377 (377)
7 3hwk_A Methylcitrate synthase; 100.0 0 0 819.3 38.8 403 1-425 9-412 (414)
8 1vgp_A 373AA long hypothetical 100.0 0 0 815.8 37.1 371 42-428 3-373 (373)
9 2ifc_A Citrate synthase; oxalo 100.0 0 0 810.4 37.2 375 42-429 7-385 (385)
10 1aj8_A Citrate synthase; hyper 100.0 0 0 796.2 40.6 370 43-429 2-371 (371)
11 1o7x_A Citrate synthase; lyase 100.0 0 0 799.9 37.1 376 39-428 1-377 (377)
12 2c6x_A Citrate synthase 1; tri 100.0 0 0 778.1 37.5 360 43-422 2-363 (363)
13 1vgm_A 378AA long hypothetical 100.0 0 0 773.9 37.9 373 42-428 5-378 (378)
14 1a59_A Citrate synthase; cold- 100.0 0 0 772.7 38.1 366 41-424 4-378 (378)
15 2p2w_A Citrate synthase; trans 100.0 0 0 776.6 34.3 363 42-429 2-364 (367)
16 1hjr_A Holliday junction resol 49.2 11 0.00047 16.2 3.0 29 39-72 3-31 (158)
17 2zkq_s 40S ribosomal protein S 48.1 3.1 0.00013 20.1 0.0 24 65-89 14-37 (145)
18 1ffv_A CUTS, iron-sulfur prote 39.1 16 0.00068 15.1 3.4 22 1-22 1-22 (163)
19 3i9v_3 NADH-quinone oxidoreduc 38.8 8.7 0.00037 16.9 1.1 13 261-273 533-545 (783)
20 3c8y_A Iron hydrogenase 1; dit 30.3 13 0.00055 15.7 0.9 50 6-62 2-56 (574)
21 1vk3_A Phosphoribosylformylgly 28.3 24 0.001 13.9 2.1 47 79-126 9-59 (615)
22 2nx2_A Hypothetical protein YP 26.8 25 0.0011 13.7 2.7 14 217-230 30-43 (181)
23 2ohc_A TRNA-splicing endonucle 22.2 31 0.0013 13.1 1.8 15 81-95 39-53 (289)
24 2l0c_A Putative membrane prote 21.3 23 0.00096 14.0 0.8 13 59-71 64-76 (97)
25 2nx9_A Oxaloacetate decarboxyl 20.7 33 0.0014 12.9 4.0 117 224-346 205-331 (464)
26 1v97_A XD, xanthine dehydrogen 20.1 34 0.0014 12.9 3.8 122 1-128 1-167 (1332)
27 1t3u_A Conserved hypothetical 20.0 34 0.0014 12.8 2.6 23 359-381 46-68 (104)
No 1
>2h12_A Citrate synthase; acidophIle, acetic acid resistance, allostery, transferase; HET: CMX; 1.85A {Acetobacter aceti}
Probab=100.00 E-value=0 Score=1082.44 Aligned_cols=425 Identities=58% Similarity=0.990 Sum_probs=415.1
Q ss_pred CEEEEEECCEEEEEEEECCCCCCCCEEECCCC-CCCEEEECCCCCCEEEEEEEEEEEECCCCEEEECCEEHHHHHHHCCH
Q ss_conf 76999989989997523077787510100115-58618988887862387875654334477789899319999750898
Q gi|254780355|r 4 KFAKLHLGHEEIDLPIKEGSLGSSVLDISFLH-KNGIFTYDPAFSSTASCKSKITFIDGNNGILLYRGYPIEQLSEKSDF 82 (429)
Q Consensus 4 ~~~~l~~~~~~~~lpi~~~~~~~~~~d~~~l~-~~G~~~~dpG~~~ta~ceS~IT~IDG~~G~L~YRGY~IedLa~~~sF 82 (429)
+++||++|||+|||||++||+|+++|||++|+ ++|++||||||.||++|||+||||||++|+|+||||||+|||++++|
T Consensus 11 ~~~~~~~~g~~~~~pi~~~~~~~~~~d~~~~~~~~G~~~~dpG~~~t~~~eS~IT~IDG~~G~L~YRGy~I~dLa~~~sF 90 (436)
T 2h12_A 11 STATISVDGKSAEMPVLSGTLGPDVIDIRKLPAQLGVFTFDPGYGETAACNSKITFIDGDKGVLLHRGYPIAQLAENASY 90 (436)
T ss_dssp CEEEEEETTEEEEEEEECCSBSCCEEECTTHHHHHSCEEECTTCTTEEEEEESSEEEETTTTEEEETTEEHHHHHHHCCH
T ss_pred EEEEEEECCEEEEEEEEECCCCCCEEEEHHHHCCCCCEEECCCCCCCCEEEEEEEEEECCCCEEEECCEEHHHHHHCCCH
T ss_conf 26999779979995455478898535501000248948868887872147776436847864799999459998705999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
Q ss_conf 99999998187999899999999886406899899999985124765257899999998752068557678788988899
Q gi|254780355|r 83 LEVCYLLLHGELANVSQQKDFNDKISRHALLNENMSRFFMGFPSSAHPMAMLVSAVGALSSFYYSPSGVQDLEQCVNVSL 162 (429)
Q Consensus 83 eEVayLLl~GeLPt~~el~~F~~~l~~~~~lpe~v~~~i~~~p~~ahPM~~L~~~vsaL~a~~~~~~~~~d~~~~~~~a~ 162 (429)
||||||||+|+|||++|+++|+.+|.+++.+|+.+.+++++||+++|||++|+++|++|++++++..+..+++.....++
T Consensus 91 EEVayLLl~G~LPt~~el~~f~~~l~~~~~lp~~~~~~i~~~p~~ahPM~~L~~~vsal~~~~p~~~~~~~~~~~~~~a~ 170 (436)
T 2h12_A 91 EEVIYLLLNGELPNKAQYDTFTNTLTNHTLLHEQIRNFFNGFRRDAHPMAILCGTVGALSAFYPDANDIAIPANRDLAAM 170 (436)
T ss_dssp HHHHHHHHHSSCCCHHHHHHHHHHHHTTCSCCGGGHHHHTTSCTTCCHHHHHHHHHHHHGGGCC--------CCHHHHHH
T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH
T ss_conf 99999997287997677767899988603355999999973786678278999999987720985422357688999999
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHEECCCCCCCHHHHHHHHH
Q ss_conf 99999999999999972798534888642468877876428984101479699999875635013678763015555442
Q gi|254780355|r 163 RMIAKISTIAAMIYKYSIGQPFVYPRSDLDYASNFLHMCFSVPCAEYQVNPLLARAMNRIFILHADHEQNASTSTVRLAG 242 (429)
Q Consensus 163 rLiA~~p~i~A~~yr~~~G~~~i~Pd~~lsyaeNfL~Ml~~~~~~~~~~~~~~~~ald~~LILhADHe~NaSTft~R~va 242 (429)
|++|++|+|+|++||++.|+++++|+++++|++|||+|+++.+...++++|..+|+||++||||||||+||||||+||++
T Consensus 171 rliA~~p~i~a~~y~~~~g~~~~~p~~~l~~a~nfl~m~~~~~~~~~~~~~~~~~~ld~~LILhADHe~NaSTfaaRvva 250 (436)
T 2h12_A 171 RLIAKIPTIAAWAYKYTQGEAFIYPRNDLNYAENFLSMMFARMSEPYKVNPVLARAMNRILILHADHEQNASTSTVRLAG 250 (436)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCCCCCCTTSCHHHHHHHHHHCBTTBCCCCCHHHHHHHHHHHHHHSCCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
T ss_conf 99999999999999986799877798775678889987405887656657689999999999971256641599999998
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCEEECCCCCCCCCCCHHHHHHHHHH
Q ss_conf 05654246776755421002220352899999862155351279999998214786143027743555540346899999
Q gi|254780355|r 243 SSGADPFACIAAGVACLGGRAHGGANEEALNMLMEIGSLERIPHYIMRAKDKNDPFRIMGFGHRVYRNHDPRCRIMRETM 322 (429)
Q Consensus 243 St~adlysai~agi~aL~GPlHGGAne~v~~ml~~I~~~~~v~~~i~~~~~~~~~~ri~GfGHrvyk~~DPRa~~l~~~~ 322 (429)
||++|+|+||+|||+|||||+||||||+|++||++|+++++++.|+...+.++++.|||||||||||++||||++|+++|
T Consensus 251 ST~ad~ysavsAgi~aL~GPlHGGAne~v~~ml~ei~~~~~~~~~i~~~~~~~~~~~l~GFGHrvYk~~DPRa~~l~~~~ 330 (436)
T 2h12_A 251 STGANPFACIAAGIAALWGPAHGGANEAVLKMLARIGKKENIPAFIAQVKDKNSGVKLMGFGHRVYKNFDPRAKIMQQTC 330 (436)
T ss_dssp TTTCCHHHHHHHHHHHHHSTTTTTHHHHHHHHHHHHCSGGGHHHHHHHHHCTTSCCCCTTBCCSSCSSCCHHHHHHHHHH
T ss_pred HCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 22798157899999863797667669999999998478330699999998652287466778776888894189999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 99888608776517999999999996115314579877844788999998499966858999999998999999999707
Q gi|254780355|r 323 YEVLEVTGRFNDPIAQVAIELERIALEDEYFIERKLYPNVDFYSGITLRALGFPTNLFTVLFAVARTAGWVSQWTEMIVD 402 (429)
Q Consensus 323 ~~l~~~~~~~~~~~~~~a~~le~~a~~d~~~~~r~l~pNvDfysg~i~~~lGip~~~ft~iFa~~R~~Gw~AH~~Eq~~~ 402 (429)
+++.++.+..++++++++.++|++++++++|++|+||||||||+|++|++||||++|||+||++||++||+|||+||+++
T Consensus 331 ~~l~~~~~~~~~~l~~ia~~le~~~~~~~~~~~r~l~PNVDfy~~~l~~~lG~p~~~~t~lFa~~R~~Gw~AH~~Eq~~~ 410 (436)
T 2h12_A 331 HEVLTELGIKDDPLLDLAVELEKIALSDDYFVQRKLYPNVDFYSGIILKAMGIPTSMFTVLFAVARTTGWVSQWKEMIEE 410 (436)
T ss_dssp HHHHHHTTCCCCHHHHHHHHHHHHHHHSHHHHHTTCCBCTHHHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 99998708874189999999999998887524589876748899999998196945400899999999999999999708
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHC
Q ss_conf 89830045621058876870685542
Q gi|254780355|r 403 PSRRIGRPRQLYTGALKRDYVPLEER 428 (429)
Q Consensus 403 ~~~ri~RP~~~Y~G~~~r~y~pi~~R 428 (429)
+.+||+||||+|||+.+|+||||++|
T Consensus 411 ~~~ri~RPr~~Y~G~~~r~y~pi~~R 436 (436)
T 2h12_A 411 PGQRISRPRQLYIGAPQRDYVPLAKR 436 (436)
T ss_dssp TTCCCCCCEEEECSCCCCCCCCGGGC
T ss_pred CCCCEECCCCCCCCCCCCCCCCCCCC
T ss_conf 78962375631169999998780019
No 2
>3msu_A Citrate synthase; helix bundle, APHA-beta fold, csgid, center for structural G of infectious diseases, transferase; HET: OAA; 1.84A {Francisella tularensis}
Probab=100.00 E-value=0 Score=1053.68 Aligned_cols=417 Identities=51% Similarity=0.884 Sum_probs=402.0
Q ss_pred CCCCEEEEEECCE--EEEEEEECCCCCCCCEEECCCCCCCEEEECCCCCCEEEEEEEEEEEECCCCEEEECCEEHHHHHH
Q ss_conf 9987699998998--99975230777875101001155861898888786238787565433447778989931999975
Q gi|254780355|r 1 MTDKFAKLHLGHE--EIDLPIKEGSLGSSVLDISFLHKNGIFTYDPAFSSTASCKSKITFIDGNNGILLYRGYPIEQLSE 78 (429)
Q Consensus 1 M~~~~~~l~~~~~--~~~lpi~~~~~~~~~~d~~~l~~~G~~~~dpG~~~ta~ceS~IT~IDG~~G~L~YRGY~IedLa~ 78 (429)
|+ |++||+++++ +|||||++||+|+++|||++|+++|++||||||.||++|||+||||||++|+|+||||||+|||+
T Consensus 9 ~~-~~~~l~~~~~~~~~~~p~~~~~~g~~~~d~~~l~~~g~~t~dpGl~~t~~~eS~IT~IDG~~G~L~YRGy~I~dLa~ 87 (427)
T 3msu_A 9 MS-KYATLKYADKNIEIELPVYSPSLGNDCIDVSSLVKHGIFTYDPGFMSTAACESKITYIDGGKGVLLHRGYPIEEWTQ 87 (427)
T ss_dssp SC-CEEEEEEGGGTEEEEEEEECCSSSCEEEECGGGGGGTEEEECTTCTTEEEEEESSEEEETTTTEEEETTEEHHHHHH
T ss_pred HC-CEEEEEECCCCEEEEEEEECCCCCCCEEEHHHHHCCCCEEECCCCCCCEEEEEECEEEECCCCEEEECCEEHHHHHC
T ss_conf 04-41699988976268722340888987357266653897865897688227987661071887289999946999864
Q ss_pred HCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHH
Q ss_conf 08989999999818799989999999988640689989999998512476525789999999875206855767878898
Q gi|254780355|r 79 KSDFLEVCYLLLHGELANVSQQKDFNDKISRHALLNENMSRFFMGFPSSAHPMAMLVSAVGALSSFYYSPSGVQDLEQCV 158 (429)
Q Consensus 79 ~~sFeEVayLLl~GeLPt~~el~~F~~~l~~~~~lpe~v~~~i~~~p~~ahPM~~L~~~vsaL~a~~~~~~~~~d~~~~~ 158 (429)
+++|||||||||+|+|||++|+++|+..+.+++.+|+++.++++.||+++|||++|++++++|++++++..+ ++...
T Consensus 88 ~~tFEEVayLLl~GeLP~~~el~~f~~~l~~~~~lp~~~~~~~~~~p~~ahPM~~L~~~vsaL~~~~~~~~~---~~~~~ 164 (427)
T 3msu_A 88 KSNYRTLCYALIYGELPTDEQVKSFRQEIINKMPVCEHVKAAIAAMPQHTHPMSSLIAGVNVLAAEHIHNGQ---KESQD 164 (427)
T ss_dssp HCCHHHHHHHHHHSSCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHSCTTCCHHHHHHHHHHHHHHHHHHTTS---CCCHH
T ss_pred CCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCC---HHHHH
T ss_conf 698999999998588998799888999999837763789999983875578703677788876301245541---67789
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHEECCCCCCCHHHHH
Q ss_conf 88999999999999999997279853488864246887787642898410147969999987563501367876301555
Q gi|254780355|r 159 NVSLRMIAKISTIAAMIYKYSIGQPFVYPRSDLDYASNFLHMCFSVPCAEYQVNPLLARAMNRIFILHADHEQNASTSTV 238 (429)
Q Consensus 159 ~~a~rLiA~~p~i~A~~yr~~~G~~~i~Pd~~lsyaeNfL~Ml~~~~~~~~~~~~~~~~ald~~LILhADHe~NaSTft~ 238 (429)
+.+.|++|++|+|+|++||++.|+++++|+++++|++|||+||++. ...++++|..+++||++||||||||+||||||+
T Consensus 165 ~~a~~liA~~p~i~a~~yr~~~g~~~~~P~~~l~~~~nfl~ml~~~-~~~~~~~~~~~~aLd~~LILhADHe~NaSTfaa 243 (427)
T 3msu_A 165 EVAKNIVAKIATIAAMAYRHNHGKKFLEPKMEYGYAENFLYMMFAD-DESYKPDELHIKAMDTIFMLHADHEQNASTSTV 243 (427)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCCCCCTTSCHHHHHHHHHHCS-STTCCCCHHHHHHHHHHHHHHSCCSSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCC-CCCCCCCHHHHHHHHHHEEEECCCCCCHHHHHH
T ss_conf 9999988888899999999976998878852011455689997265-434799999999865224664367886167777
Q ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCEEECCCCCCCCCCCHHHHHH
Q ss_conf 54420565424677675542100222035289999986215535127999999821478614302774355554034689
Q gi|254780355|r 239 RLAGSSGADPFACIAAGVACLGGRAHGGANEEALNMLMEIGSLERIPHYIMRAKDKNDPFRIMGFGHRVYRNHDPRCRIM 318 (429)
Q Consensus 239 R~vaSt~adlysai~agi~aL~GPlHGGAne~v~~ml~~I~~~~~v~~~i~~~~~~~~~~ri~GfGHrvyk~~DPRa~~l 318 (429)
|||+||++|+|+||+|||++||||+||||||+|++||++|++++++++|+.+++++++++|||||||||||++||||++|
T Consensus 244 RvvaSt~ad~ysaiaAgi~aL~GplHGGA~~~v~~~l~~i~~~~~~~~~i~~~~~~~~~~~l~GFGHrvYk~~DPRa~~l 323 (427)
T 3msu_A 244 RLSGSTGNSPYAAIIAGITALWGPAHGGANEAVLKMLSEIGSTENIDKYIAKAKDKDDPFRLMGFGHRVYKNTDPRATAM 323 (427)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHTSHHHHCHHHHHHHHHHHHCSTTHHHHHHHHHHTC-----CCSBCCSSSSSCCHHHHHH
T ss_pred HHHHHCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCHHHHH
T ss_conf 77772598577899977775158632638999999999838987899999998621156243056876688998258999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999988860877651799999999999611531457987784478899999849996685899999999899999999
Q gi|254780355|r 319 RETMYEVLEVTGRFNDPIAQVAIELERIALEDEYFIERKLYPNVDFYSGITLRALGFPTNLFTVLFAVARTAGWVSQWTE 398 (429)
Q Consensus 319 ~~~~~~l~~~~~~~~~~~~~~a~~le~~a~~d~~~~~r~l~pNvDfysg~i~~~lGip~~~ft~iFa~~R~~Gw~AH~~E 398 (429)
++++++++++.+..++++++++.++|+++++++||++|+||||||||+|++|++||||++|||++|++||++||+|||+|
T Consensus 324 ~~~~~~l~~~~~~~~~~l~~ia~~le~~~~~~~~~~~k~l~pNVDfysg~l~~~lGip~~~~t~lFai~R~~Gw~AH~~E 403 (427)
T 3msu_A 324 KKNCEEILAKLGHSDNPLLTVAKKLEEIALQDEFFIERKLFSNVDFYSGIILKAMGIPEDMFTAIFALARTSGWISQWIE 403 (427)
T ss_dssp HHHTHHHHHHGGGCSSHHHHHHHHHHHHHC------CCCCCBCHHHHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999982887427999999999999888746678998370779999999819686766499999999999999999
Q ss_pred HHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 970789830045621058876870
Q gi|254780355|r 399 MIVDPSRRIGRPRQLYTGALKRDY 422 (429)
Q Consensus 399 q~~~~~~ri~RP~~~Y~G~~~r~y 422 (429)
|++++.+||+||||+||||.+|+|
T Consensus 404 q~~~~~~riiRPr~~Y~G~~~r~y 427 (427)
T 3msu_A 404 MVNDPAQKIGRPRQLYTGATNRNF 427 (427)
T ss_dssp HHHCTTCCCCCCEEEECSCCSCCC
T ss_pred HHHCCCCCCCCCCCCCCCCCCCCC
T ss_conf 971868882186870169999998
No 3
>1k3p_A Citrate synthase; transferase; 2.20A {Escherichia coli} SCOP: a.103.1.1 PDB: 1owb_A* 1owc_A 1nxe_A 1nxg_A*
Probab=100.00 E-value=0 Score=1000.35 Aligned_cols=425 Identities=58% Similarity=1.002 Sum_probs=411.9
Q ss_pred CCCEEEEEECC-EEEEEEEECCCCCCCCEEECCCCCCCEEEECCCCCCEEEEEEEEEEEECCCCEEEECCEEHHHHHHHC
Q ss_conf 98769999899-89997523077787510100115586189888878623878756543344777898993199997508
Q gi|254780355|r 2 TDKFAKLHLGH-EEIDLPIKEGSLGSSVLDISFLHKNGIFTYDPAFSSTASCKSKITFIDGNNGILLYRGYPIEQLSEKS 80 (429)
Q Consensus 2 ~~~~~~l~~~~-~~~~lpi~~~~~~~~~~d~~~l~~~G~~~~dpG~~~ta~ceS~IT~IDG~~G~L~YRGY~IedLa~~~ 80 (429)
||||+||+++| ++|||||++||.|+++|||++|+++|++||||||.||++|||+||||||++|+|+||||||+|||+++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~d~~~l~~~G~~~~dPGl~~t~~~eS~Is~IDg~~G~L~YRGy~I~dLa~~~ 80 (426)
T 1k3p_A 1 ADTKAKLTLNGDTAVELDVLKGTLGQDVIDIRTLGSKGVFTFDPGFTSTASCESKITFIDGDEGILLHRGFPIDQLATDS 80 (426)
T ss_dssp CCSSSEEEEESSSCEEEEEECCSSSCCEEECTTTTTTTCCEECTTCTTEEEEEESSEEEETTTTEEEETTEEHHHHHHHS
T ss_pred CCCCEEEEECCCCEEEEEEEECCCCCCEEEEHHHCCCCEEEECCCCCCEEEEEEECEEEECCCEEEEECCEEHHHHHHCC
T ss_conf 98505999779934885345468898745504414688485488778713798778258578608999996699987259
Q ss_pred CHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH
Q ss_conf 98999999981879998999999998864068998999999851247652578999999987520685576787889888
Q gi|254780355|r 81 DFLEVCYLLLHGELANVSQQKDFNDKISRHALLNENMSRFFMGFPSSAHPMAMLVSAVGALSSFYYSPSGVQDLEQCVNV 160 (429)
Q Consensus 81 sFeEVayLLl~GeLPt~~el~~F~~~l~~~~~lpe~v~~~i~~~p~~ahPM~~L~~~vsaL~a~~~~~~~~~d~~~~~~~ 160 (429)
+||||+||||+|+|||++|+++|+.++.+++.+|+.+.++++.||+++|||++|+++++++++++++..+..+++.....
T Consensus 81 sFEEVa~LLl~G~LPt~~el~~f~~~l~~~~~lp~~v~~~l~~~p~~ahpm~~L~~~~s~l~a~~~~~~d~~~~~~~~~~ 160 (426)
T 1k3p_A 81 NYLEVCYILLNGEKPTQEQYDEFKTTVTRHTMIHEQITRLFHAFRRDSHPMAVMCGITGALAAFYHDSLDVNNPRHREIA 160 (426)
T ss_dssp CHHHHHHHHHHSSCCCHHHHHHHHHHHHTTCSCCTTTHHHHTTSCTTSCHHHHHHHHHTTHHHHCGGGCCTTCHHHHHHH
T ss_pred CHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHH
T ss_conf 99999999977998736677888889886444759999999847744672677778877664126643446766789999
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHEECCCCCCCHHHHHHH
Q ss_conf 99999999999999999727985348886424688778764289841014796999998756350136787630155554
Q gi|254780355|r 161 SLRMIAKISTIAAMIYKYSIGQPFVYPRSDLDYASNFLHMCFSVPCAEYQVNPLLARAMNRIFILHADHEQNASTSTVRL 240 (429)
Q Consensus 161 a~rLiA~~p~i~A~~yr~~~G~~~i~Pd~~lsyaeNfL~Ml~~~~~~~~~~~~~~~~ald~~LILhADHe~NaSTft~R~ 240 (429)
+.+|+|++|+++|++||++.|++++.|+++++|++||++||++.....++++|..+++||++||||||||+|+||||+|+
T Consensus 161 ~~~liA~~p~i~A~~~r~~~g~~~~~P~~~ls~aenfl~m~~~~~~~~~e~~~~~~~~l~~~lvl~adHg~n~St~aar~ 240 (426)
T 1k3p_A 161 AFRLLSKMPTMAAMCYKYSIGQPFVYPRNDLSYAGNFLNMMFSTPCEPYEVNPILERAMDRILILHADHEQNASTSTVRT 240 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCCCCCCTTSCHHHHHHHHHHCBTTBCCCCCHHHHHHHHHHHHTTSCCSSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHH
T ss_conf 99998888999999999964788778988757799999998379865567898999999989754302677604999999
Q ss_pred HHCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCEEECCCCCCCCCCCHHHHHHHH
Q ss_conf 42056542467767554210022203528999998621553512799999982147861430277435555403468999
Q gi|254780355|r 241 AGSSGADPFACIAAGVACLGGRAHGGANEEALNMLMEIGSLERIPHYIMRAKDKNDPFRIMGFGHRVYRNHDPRCRIMRE 320 (429)
Q Consensus 241 vaSt~adlysai~agi~aL~GPlHGGAne~v~~ml~~I~~~~~v~~~i~~~~~~~~~~ri~GfGHrvyk~~DPRa~~l~~ 320 (429)
++||++|+|+|++||+++|+||+||||||+|++||++|++.+++++++.+.+++++..|||||||||||++|||+++|++
T Consensus 241 ~ast~~d~~~~~~aai~al~GplHGGA~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~ri~GfGH~vy~~~DPRa~~l~~ 320 (426)
T 1k3p_A 241 AGSSGANPFACIAAGIASLWGPAHGGANEAALKMLEEISSVKHIPEFFRRAKDKNDSFRLMGFGHRVYKNYDPRATVMRE 320 (426)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHHHHSSCTTTTTGGGSTTSSSTTSTTTTSTTTCCSSCCTTTTBCCSSCSSCCTTHHHHHH
T ss_pred HHCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHH
T ss_conf 97058637789999998636988787899999999983683331899999986314661115587778999936899999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99998886087765179999999999961153145798778447889999984999668589999999989999999997
Q gi|254780355|r 321 TMYEVLEVTGRFNDPIAQVAIELERIALEDEYFIERKLYPNVDFYSGITLRALGFPTNLFTVLFAVARTAGWVSQWTEMI 400 (429)
Q Consensus 321 ~~~~l~~~~~~~~~~~~~~a~~le~~a~~d~~~~~r~l~pNvDfysg~i~~~lGip~~~ft~iFa~~R~~Gw~AH~~Eq~ 400 (429)
+++++.++.+. .+++++++.++|+++.++++|.+|++|||||||+|++|++||||+++||++|++||++||+|||+||+
T Consensus 321 ~~~~l~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~k~l~pNvD~~~~~l~~~lGip~~~~t~lf~i~R~~Gw~AH~~Eq~ 399 (426)
T 1k3p_A 321 TCHEVLKELGT-KDDLLEVAMELENIALNDPYFIEKKLYPNVDFYSGIILKAMGIPSSMFTVIFAMARTVGWIAHWSEMH 399 (426)
T ss_dssp HHHHHHTTSCT-TSTTTTHHHHHHHHHHHCHHHHHTTCCBCHHHHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCC-CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999998486-22799999999999987566136899868178999999980979566349999999999999999998
Q ss_pred HCCCCCCCCCCCCCCCCCCCCCCCHHHC
Q ss_conf 0789830045621058876870685542
Q gi|254780355|r 401 VDPSRRIGRPRQLYTGALKRDYVPLEER 428 (429)
Q Consensus 401 ~~~~~ri~RP~~~Y~G~~~r~y~pi~~R 428 (429)
+++ .||+|||++||||.+|+|+|+++|
T Consensus 400 ~~~-~riiRPr~~YvG~~~r~~~~~~~R 426 (426)
T 1k3p_A 400 SDG-MKIARPRQLYTGYEKRDFKSDIKR 426 (426)
T ss_dssp HTT-CCCCCCEEEECSCCSCCCCCSCCC
T ss_pred HCC-CCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 569-985076760149999889982349
No 4
>2ibp_A Citrate synthase; disulfide bond, homodimer, thermophilic, catenane, transferase; 1.60A {Pyrobaculum aerophilum str}
Probab=100.00 E-value=0 Score=861.50 Aligned_cols=397 Identities=35% Similarity=0.582 Sum_probs=367.9
Q ss_pred CCCCEEEEEECCEEEEEEEECCCCCCCCEEECCCCCCCEEEECCCCCCEEEEEEEEEEEECCCCEEEECCEEHHHHHHHC
Q ss_conf 99876999989989997523077787510100115586189888878623878756543344777898993199997508
Q gi|254780355|r 1 MTDKFAKLHLGHEEIDLPIKEGSLGSSVLDISFLHKNGIFTYDPAFSSTASCKSKITFIDGNNGILLYRGYPIEQLSEKS 80 (429)
Q Consensus 1 M~~~~~~l~~~~~~~~lpi~~~~~~~~~~d~~~l~~~G~~~~dpG~~~ta~ceS~IT~IDG~~G~L~YRGY~IedLa~~~ 80 (429)
||+++.+.+.+||..+- +.|+ +++|+.+|.+|+|+||+|||++|+|+||||+|+||++++
T Consensus 1 ~~~~~~~~~~~~~~~~~-----~~~~---------------~~~GL~gv~v~~t~Is~IDg~~G~L~YRG~~i~dLa~~~ 60 (409)
T 2ibp_A 1 MSEQTVQVKTTGKILQS-----PCGP---------------IIHGLEDVLIKSTSISDIDGEKGILWYRGYRIEELARLS 60 (409)
T ss_dssp --CEEEEEEESSCEECC-----TTSC---------------EEGGGTTCEEEEECSEEEETTTTEEEETTEEHHHHHHHC
T ss_pred CCCCCCEEEECCCEECC-----CCCC---------------CCCCCCCCEEEEEECEEEECCCCEEEECCEEHHHHHHCC
T ss_conf 98645234412744104-----6676---------------567889976837768327488877989885499986059
Q ss_pred CHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCC----------
Q ss_conf 9899999998187999899999999886406899899999985124765257899999998752068557----------
Q gi|254780355|r 81 DFLEVCYLLLHGELANVSQQKDFNDKISRHALLNENMSRFFMGFPSSAHPMAMLVSAVGALSSFYYSPSG---------- 150 (429)
Q Consensus 81 sFeEVayLLl~GeLPt~~el~~F~~~l~~~~~lpe~v~~~i~~~p~~ahPM~~L~~~vsaL~a~~~~~~~---------- 150 (429)
+||||+||||+|+|||++|+++|+.++++++.+|+++.++++.+|+ .|||++++++|++|++++++..+
T Consensus 61 sfEEVa~LL~~G~LPt~~el~~f~~~l~~~~~l~~~v~~~i~~~p~-~~p~~~l~~~v~~l~~~~~~~~~~~~a~~~~~~ 139 (409)
T 2ibp_A 61 TYEEVSYLILYGRLPTKRELEDYINRMKKYRELHPATVEVIRNLAK-AHPMFALEAAVAAEGAYDEDNQKLIEALSVGRY 139 (409)
T ss_dssp CHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTSCCHHHHHHHHHTTT-SCHHHHHHHHHHHHHHHCHHHHHHHHHHHTTCC
T ss_pred CHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-CCCCHHHHHHHHHHHCCCCCCHHHHHHHHCCCC
T ss_conf 9999999997687989899999999998733588899999986554-087277788888764028541346776411221
Q ss_pred -CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHEECCC
Q ss_conf -6787889888999999999999999997279853488864246887787642898410147969999987563501367
Q gi|254780355|r 151 -VQDLEQCVNVSLRMIAKISTIAAMIYKYSIGQPFVYPRSDLDYASNFLHMCFSVPCAEYQVNPLLARAMNRIFILHADH 229 (429)
Q Consensus 151 -~~d~~~~~~~a~rLiA~~p~i~A~~yr~~~G~~~i~Pd~~lsyaeNfL~Ml~~~~~~~~~~~~~~~~ald~~LILhADH 229 (429)
..+++...+.+.+|+|++|+++|++||+++|++++.|+++++|++||++||++. ++++..+|+||++|||||||
T Consensus 140 ~~~~~~~~~~~a~~lia~~p~i~a~~~r~~~g~~~~~p~~~~~~a~nfl~ml~g~-----~~~~~~~~~l~~~Lil~aDH 214 (409)
T 2ibp_A 140 KAEEKELAYRIAEKLVAKMPTIVAYHYRFSRGLEVVRPRDDLGHAANFLYMMFGR-----EPDPLASRGIDLYLILHADH 214 (409)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCTTSCHHHHHHHHHHSS-----CCCHHHHHHHHHHHHHTSCC
T ss_pred CCCCHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCC-----CCCHHHHHHHHHHHHHHCCC
T ss_conf 1004678999999999865315899999976998878987647999999985389-----99989999999887464158
Q ss_pred CCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHHHHHH-CCCCCEEECCCCCCC
Q ss_conf 8763015555442056542467767554210022203528999998621553512799999982-147861430277435
Q gi|254780355|r 230 EQNASTSTVRLAGSSGADPFACIAAGVACLGGRAHGGANEEALNMLMEIGSLERIPHYIMRAKD-KNDPFRIMGFGHRVY 308 (429)
Q Consensus 230 e~NaSTft~R~vaSt~adlysai~agi~aL~GPlHGGAne~v~~ml~~I~~~~~v~~~i~~~~~-~~~~~ri~GfGHrvy 308 (429)
|+|+||||+|+++||++|+|+|++||+++|+||+|||||++|++||++++++++++.++.+.+. +++ ||||||||||
T Consensus 215 ~~n~Stfa~R~vaSt~ad~y~a~~aa~~al~GplHgga~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~i~GfGH~vy 292 (409)
T 2ibp_A 215 EVPASTFAAHVVASTLSDLYSSVAAAIAALKGPLHGGANEMAVRNYLEIGTPAKAKEIVEAATKPGGP--KLMGVGHRVY 292 (409)
T ss_dssp SCCHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTTSCHHHHHHHHHHHHCCGGGHHHHHHHHTSTTCC--CCTTBCCSSC
T ss_pred CCCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHCCCC--CCCCCCCCCC
T ss_conf 88730377877761376502367888888425456760799999999827802257899999851587--4547887546
Q ss_pred CCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 55540346899999998886087765179999999999961153145798778447889999984999668589999999
Q gi|254780355|r 309 RNHDPRCRIMRETMYEVLEVTGRFNDPIAQVAIELERIALEDEYFIERKLYPNVDFYSGITLRALGFPTNLFTVLFAVAR 388 (429)
Q Consensus 309 k~~DPRa~~l~~~~~~l~~~~~~~~~~~~~~a~~le~~a~~d~~~~~r~l~pNvDfysg~i~~~lGip~~~ft~iFa~~R 388 (429)
|.+|||+.+|+++++++....+. ...+++++.++++.++++++|..|++|||||||+|++|+.||||+++||++|++||
T Consensus 293 ~~~DPRa~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~k~l~pNvD~~~~~l~~~lGip~~~~~~lF~i~R 371 (409)
T 2ibp_A 293 KAYDPRAKIFKEFSRDYVAKFGD-PQNLFAIASAIEQEVLSHPYFQQRKLYPNVDFWSGIAFYYMGIPYEYFTPIFAMSR 371 (409)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHCC-TTCHHHHHHHHHHHHHHCHHHHHTTCCBCGGGTHHHHHHHHTCCGGGHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 78999279999999999998287-30678899999999998874136898717288999999991979566679999999
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHC
Q ss_conf 9899999999970789830045621058876870685542
Q gi|254780355|r 389 TAGWVSQWTEMIVDPSRRIGRPRQLYTGALKRDYVPLEER 428 (429)
Q Consensus 389 ~~Gw~AH~~Eq~~~~~~ri~RP~~~Y~G~~~r~y~pi~~R 428 (429)
++||+|||+||+++ +||+||+++||||.+|+||||++|
T Consensus 372 ~~Gw~AH~~Eq~~~--~~liRP~~~YvG~~~r~~~pi~~R 409 (409)
T 2ibp_A 372 VVGWVAHVLEYWEN--NRIFRPRACYIGPHDLQYIPLEQR 409 (409)
T ss_dssp HHHHHHHHHHHGGG--CCCCCCEEEECSCCCCCCCCGGGC
T ss_pred HHHHHHHHHHHHHC--CCCCCCCCEECCCCCCCCCCCCCC
T ss_conf 99999999999866--987487751249999999772129
No 5
>1csh_A Citrate synthase; lyase(OXO-acid); HET: AMX; 1.65A {Gallus gallus} SCOP: a.103.1.1 PDB: 1amz_A* 1csi_A* 1csr_A* 1css_A* 1al6_A* 6csc_A* 2cts_A* 3enj_A 1cts_A 4cts_A 1csc_A* 2csc_A* 3csc_A* 4csc_A* 5csc_A 5cts_A* 6cts_A* 5csc_B
Probab=100.00 E-value=0 Score=860.10 Aligned_cols=370 Identities=29% Similarity=0.428 Sum_probs=342.0
Q ss_pred CCEEEECC---CCCCEEEEEEEEEEEECCCCEEEECCEEHHHHH---------HHCCHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 86189888---878623878756543344777898993199997---------508989999999818799989999999
Q gi|254780355|r 37 NGIFTYDP---AFSSTASCKSKITFIDGNNGILLYRGYPIEQLS---------EKSDFLEVCYLLLHGELANVSQQKDFN 104 (429)
Q Consensus 37 ~G~~~~dp---G~~~ta~ceS~IT~IDG~~G~L~YRGY~IedLa---------~~~sFeEVayLLl~GeLPt~~el~~F~ 104 (429)
.|.+|+|+ |+.++.+|.|.||+|||++| |+||||+|+||+ ++++||||+||||||+|||++||++|+
T Consensus 31 vg~it~d~~~gGlrG~~~~~t~iS~iD~~~G-l~YRGy~I~eL~~~l~k~~~~e~~~fEEv~yLLl~G~LPt~~eL~~f~ 109 (435)
T 1csh_A 31 VGQITVDMSYGGMRGMKGLIYETSVLDPDEG-IRFRGFSIPECQKLLPKAGGGEEPLPEGLFWLLVTGQIPTPEQVSWVS 109 (435)
T ss_dssp CCCCCHHHHHTTTTTCCCCCCCSEEEETTTE-EEETTEEHHHHHHHSCBCTTCCSBCHHHHHHHHHHSSCCCHHHHHHHH
T ss_pred EEEEEECCCCCCCCCCCEEEEECEEECCCCC-EEECCEEHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHH
T ss_conf 4446631003655798625765704778774-257991089998774204565668799999999838796999999999
Q ss_pred HHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCC-------CCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9886406899899999985124765257899999998752068557-------678788988899999999999999999
Q gi|254780355|r 105 DKISRHALLNENMSRFFMGFPSSAHPMAMLVSAVGALSSFYYSPSG-------VQDLEQCVNVSLRMIAKISTIAAMIYK 177 (429)
Q Consensus 105 ~~l~~~~~lpe~v~~~i~~~p~~ahPM~~L~~~vsaL~a~~~~~~~-------~~d~~~~~~~a~rLiA~~p~i~A~~yr 177 (429)
.+|++++.+|+++.+++++||+++|||++|+++|++|+++++...+ ..+++..++.++||+|++|+|+|++||
T Consensus 110 ~~L~~~~~lp~~v~~~l~~~P~~~hPM~~L~~~vsaL~~~~~~~~~~~~~~~~~~~~e~~~~~~~~liAk~p~i~A~~yr 189 (435)
T 1csh_A 110 KEWAKRAALPSHVVTMLDNFPTNLHPMSQLSAAITALNSESNFARAYAEGINRTKYWEFVYEDAMDLIAKLPCVAAKIYR 189 (435)
T ss_dssp HHHHHHCCCCHHHHHHHHHSCTTSCHHHHHHHHHHHGGGGCHHHHHHHTTCCGGGHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99998258979999999858999991999999999850667530001232232103677899999999999999999999
Q ss_pred --HHCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHEECCCC-CCCHHHHHHHHHCCCCCHHHHHHH
Q ss_conf --72798534888642468877876428984101479699999875635013678-763015555442056542467767
Q gi|254780355|r 178 --YSIGQPFVYPRSDLDYASNFLHMCFSVPCAEYQVNPLLARAMNRIFILHADHE-QNASTSTVRLAGSSGADPFACIAA 254 (429)
Q Consensus 178 --~~~G~~~i~Pd~~lsyaeNfL~Ml~~~~~~~~~~~~~~~~ald~~LILhADHe-~NaSTft~R~vaSt~adlysai~a 254 (429)
++.|+++++||++++|++|||+||++ ++|..+|+||++|||||||| +||||||+|||+||++|+|+||+|
T Consensus 190 ~~~~~g~~~~~pd~~l~~a~nfl~ml~~-------~~p~~~~~ld~~LiLhADHeg~n~StfaarvvaSt~sd~ysavaa 262 (435)
T 1csh_A 190 NLYRAGSSIGAIDSKLDWSHNFTNMLGY-------TDPQFTELMRLYLTIHSDHEGGNVSAHTSHLVGSALSDPYLSFAA 262 (435)
T ss_dssp HHHSTTCCCCCCCTTSCHHHHHHHHHTC-------CCHHHHHHHHHHHHHTSCCCSCSHHHHHHHHHHTTTCCHHHHHHH
T ss_pred HHHCCCCCCCCCCCCCCHHHHHHHHCCC-------CCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHEECCCCCHHHHHHH
T ss_conf 9822899888889876699999986279-------980799999999999711568874323421000477407899999
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHC-------CCCCHHHHHHHHHHHCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 554210022203528999998621-------5535127999999821478614302774355554034689999999888
Q gi|254780355|r 255 GVACLGGRAHGGANEEALNMLMEI-------GSLERIPHYIMRAKDKNDPFRIMGFGHRVYRNHDPRCRIMRETMYEVLE 327 (429)
Q Consensus 255 gi~aL~GPlHGGAne~v~~ml~~I-------~~~~~v~~~i~~~~~~~~~~ri~GfGHrvyk~~DPRa~~l~~~~~~l~~ 327 (429)
||+|||||+||||||+|++||++| ++++++++||++.+++++ |||||||||||++|||+++|++++.+++.
T Consensus 263 ai~al~GplHGGAne~v~~~l~~i~~~~~~~~~~~~~~~~v~~~l~~~~--~i~GfGHrvyk~~DPRa~~l~~~a~~~~~ 340 (435)
T 1csh_A 263 AMNGLAGPLHGLANQEVLLWLSQLQKDLGADASDEKLRDYIWNTLNSGR--VVPGYGHAVLRKTDPRYTCQREFALKHLP 340 (435)
T ss_dssp HHHHHTSTTTTTHHHHHHHHHHHHHHHTTSSCCHHHHHHHHHHHHHTTC--CCTTBCCSSCCSCCHHHHHHHHHHHHHCT
T ss_pred HHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCC--EEECCCCCCCCCCCCHHHHHHHHHHHHCC
T ss_conf 8886139744675899999999998634888788899999998652587--42056875578899518999999998706
Q ss_pred HCCCCCCHHHHHHHHHHHHHHH--HHHCCCCCCCCCCCHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 6087765179999999999961--153145798778447889999984999-6685899999999899999999970789
Q gi|254780355|r 328 VTGRFNDPIAQVAIELERIALE--DEYFIERKLYPNVDFYSGITLRALGFP-TNLFTVLFAVARTAGWVSQWTEMIVDPS 404 (429)
Q Consensus 328 ~~~~~~~~~~~~a~~le~~a~~--d~~~~~r~l~pNvDfysg~i~~~lGip-~~~ft~iFa~~R~~Gw~AH~~Eq~~~~~ 404 (429)
++++++++.++++++.+ +++|..|+||||||||||++|++|||| .+|||+||++||++||+|||+||++..
T Consensus 341 -----~~~~~~~~~~l~~~~~~~~~e~~~~k~l~pNVDfysg~v~~~lGip~~~~ft~iFa~sR~~Gw~AH~~Eq~~~~- 414 (435)
T 1csh_A 341 -----SDPMFKLVAQLYKIVPNVLLEQGKAKNPWPNVDAHSGVLLQYYGMTEMNYYTVLFGVSRALGVLAQLIWSRALG- 414 (435)
T ss_dssp -----TCHHHHHHHHHHHHHHHHHHHHTCCSCCSBCTHHHHHHHHHHTTCCCGGGHHHHHHHHHHHHHHHHHHHHHHTT-
T ss_pred -----CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC-
T ss_conf -----48236999999999999999864668998782359999999839996024589999999999999999999628-
Q ss_pred CCCCCCCCCCCCCCCCCC
Q ss_conf 830045621058876870
Q gi|254780355|r 405 RRIGRPRQLYTGALKRDY 422 (429)
Q Consensus 405 ~ri~RP~~~Y~G~~~r~y 422 (429)
+||+||||+|||+.+|-+
T Consensus 415 ~~i~RP~~~Y~G~~~r~~ 432 (435)
T 1csh_A 415 FPLERPKSMSTAGLEKLS 432 (435)
T ss_dssp CCCCCCCCCCHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHCC
T ss_conf 996788865778265336
No 6
>1iom_A Citrate synthase; open form, riken structural genomics/proteomics initiative, RSGI, structural genomics, lyase; 1.50A {Thermus thermophilus HB8} SCOP: a.103.1.1 PDB: 1ixe_A*
Probab=100.00 E-value=0 Score=822.68 Aligned_cols=376 Identities=39% Similarity=0.593 Sum_probs=357.7
Q ss_pred EECCCCCCEEEEEEEEEEEECCCCEEEECCEEHHHHHHHCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCHHHHHH
Q ss_conf 98888786238787565433447778989931999975089899999998187999899999999886406899899999
Q gi|254780355|r 41 TYDPAFSSTASCKSKITFIDGNNGILLYRGYPIEQLSEKSDFLEVCYLLLHGELANVSQQKDFNDKISRHALLNENMSRF 120 (429)
Q Consensus 41 ~~dpG~~~ta~ceS~IT~IDG~~G~L~YRGY~IedLa~~~sFeEVayLLl~GeLPt~~el~~F~~~l~~~~~lpe~v~~~ 120 (429)
.+++|+.++.+|+|+||+|||++|+|+||||||+||+++++||||+||||+|+|||++|+++|+.++.+++.+|+.+.+.
T Consensus 2 ~v~~GL~Gv~v~~s~Is~Idg~~G~L~YRG~~i~dLa~~~sfEeVa~LL~~G~LP~~~el~~f~~~l~~~~~lp~~~~~~ 81 (377)
T 1iom_A 2 EVARGLEGVLFTESRMCYIDGQQGKLYYYGIPIQELAEKSSFEETTFLLLHGRLPRRQELEEFSAALARRRALPAHLLES 81 (377)
T ss_dssp -CCGGGTTCCCSCCSSEEEETTTTEEEETTEEHHHHHHHCCHHHHHHHHHHSSCCCHHHHHHHHHHHHHTCSCCHHHHHH
T ss_pred CCCCCCCCCEEEEEECEEEECCCCEEEECCEEHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHHHHHH
T ss_conf 88988899858564571264888879998914999871499999999997897979999999999999854697788899
Q ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 98512476525789999999875206855767878898889999999999999999972798534888642468877876
Q gi|254780355|r 121 FMGFPSSAHPMAMLVSAVGALSSFYYSPSGVQDLEQCVNVSLRMIAKISTIAAMIYKYSIGQPFVYPRSDLDYASNFLHM 200 (429)
Q Consensus 121 i~~~p~~ahPM~~L~~~vsaL~a~~~~~~~~~d~~~~~~~a~rLiA~~p~i~A~~yr~~~G~~~i~Pd~~lsyaeNfL~M 200 (429)
+..+|+++|||+++++++++|+++++...+ .+++...+.++++||++|++++++||+..|++++.|+++++|++||++|
T Consensus 82 l~~~~~~~~pm~~l~~~vs~l~~~~~~~~~-~~~~~~~~~~~~lia~~~~i~a~~~~~~~g~~~~~p~~~~~~a~~~l~m 160 (377)
T 1iom_A 82 FKRYPVSAHPMSFLRTAVSEFGMLDPTEGD-ISREALYEKGLDLIAKFATIVAANKRLKEGKEPIPPREDLSHAANFLYM 160 (377)
T ss_dssp HTTSCTTSCHHHHHHHHHHHHHHTCTTTTC-CSHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCTTSCHHHHHHHH
T ss_pred HHHCCCCCCHHHHHHHHHHHHHCCCCCCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH
T ss_conf 860788778788999999997254864434-3017899999999987668899999987699776886313499998666
Q ss_pred HCCCCCCCCCCCHHHHHHHHHHHHEECCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCC
Q ss_conf 42898410147969999987563501367876301555544205654246776755421002220352899999862155
Q gi|254780355|r 201 CFSVPCAEYQVNPLLARAMNRIFILHADHEQNASTSTVRLAGSSGADPFACIAAGVACLGGRAHGGANEEALNMLMEIGS 280 (429)
Q Consensus 201 l~~~~~~~~~~~~~~~~ald~~LILhADHe~NaSTft~R~vaSt~adlysai~agi~aL~GPlHGGAne~v~~ml~~I~~ 280 (429)
+++. +++|..+|+||++||||||||+|+||||+|+++||++|+|+||+||+++|+||+||||+|+|++|++++++
T Consensus 161 ~~g~-----~p~~~~~~~l~~~lvl~aDHg~~~st~aaR~~aSt~adl~~av~agl~al~Gp~hGga~~~~~~~l~~~~~ 235 (377)
T 1iom_A 161 ANGV-----EPSPEQARLMDAALILHAEHGFNASTFTAIAAFSTETDLYSAITAAVASLKGPRHGGANEAVMRMIQEIGT 235 (377)
T ss_dssp HHSS-----CCCHHHHHHHHHHHHHHSCCSSCHHHHHHHHHHTTTCCHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHCS
T ss_pred HCCC-----CCCHHHHHHHHHHHHHHCCCCCCCCHHHHHEEECCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCC
T ss_conf 3389-----99989999999878653058887434665000036850889999998613898666576999999998278
Q ss_pred CCHHHHHHHHHHHCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 35127999999821478614302774355554034689999999888608776517999999999996115314579877
Q gi|254780355|r 281 LERIPHYIMRAKDKNDPFRIMGFGHRVYRNHDPRCRIMRETMYEVLEVTGRFNDPIAQVAIELERIALEDEYFIERKLYP 360 (429)
Q Consensus 281 ~~~v~~~i~~~~~~~~~~ri~GfGHrvyk~~DPRa~~l~~~~~~l~~~~~~~~~~~~~~a~~le~~a~~d~~~~~r~l~p 360 (429)
+++++++|.+.+.+++ |||||||||||.+|||+.+|+++++++.+..+ ..++++++.++|+++ ++++..|+|+|
T Consensus 236 ~~~~~~~v~~~~~~~~--~i~GFGH~vy~~~DPRa~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~--~~~~~~r~l~p 309 (377)
T 1iom_A 236 PERAREWVREKLAKKE--RIMGMGHRVYKAFDPRAGVLEKLARLVAEKHG--HSKEYQILKIVEEEA--GKVLNPRGIYP 309 (377)
T ss_dssp HHHHHHHHHHHHHTTC--CCTTBSCSSCSSCCTTHHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHH--HHHHTTTTCCB
T ss_pred CCCHHHHHHHHHHCCC--CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHH--HHHHCCCCCCC
T ss_conf 4318999999996899--88878986356899649999999999987528--730589999999877--88514689885
Q ss_pred CCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHCC
Q ss_conf 844788999998499966858999999998999999999707898300456210588768706855429
Q gi|254780355|r 361 NVDFYSGITLRALGFPTNLFTVLFAVARTAGWVSQWTEMIVDPSRRIGRPRQLYTGALKRDYVPLEERE 429 (429)
Q Consensus 361 NvDfysg~i~~~lGip~~~ft~iFa~~R~~Gw~AH~~Eq~~~~~~ri~RP~~~Y~G~~~r~y~pi~~R~ 429 (429)
|||||+|++|+.||||+++||++|++||++||+|||+||++. ++||+|||++|||+.+|+||||++||
T Consensus 310 Nvd~~~~~l~~~lG~p~~~~~~lf~i~R~~Gw~AH~~E~~~~-~~~l~RPr~~Y~G~~~~~y~p~~~R~ 377 (377)
T 1iom_A 310 NVDFYSGVVYSDLGFSLEFFTPIFAVARISGWVGHILEYQEL-DNRLLRPGAKYVGELDVPYVPLEARE 377 (377)
T ss_dssp CHHHHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHHHHHHHHH-TCCCCCCCCCCCSCSSCCCCCGGGC-
T ss_pred CHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCCCCCCCCCCCCCCCCCCCHHHCC
T ss_conf 879999999998498834443999999999999999999845-79964877500699999987845377
No 7
>3hwk_A Methylcitrate synthase; niaid, ssgcid, structural genomics, seattle structural genomics center for infectious disease, tubercluosis; 2.30A {Mycobacterium tuberculosis}
Probab=100.00 E-value=0 Score=819.31 Aligned_cols=403 Identities=27% Similarity=0.440 Sum_probs=362.7
Q ss_pred CCCCEEEEEECC-EEEEEEEECCCCCCCCEEECCCCCCCEEEECCCCCCEEEEEEEEEEEECCCCEEEECCEEHHHHHHH
Q ss_conf 998769999899-8999752307778751010011558618988887862387875654334477789899319999750
Q gi|254780355|r 1 MTDKFAKLHLGH-EEIDLPIKEGSLGSSVLDISFLHKNGIFTYDPAFSSTASCKSKITFIDGNNGILLYRGYPIEQLSEK 79 (429)
Q Consensus 1 M~~~~~~l~~~~-~~~~lpi~~~~~~~~~~d~~~l~~~G~~~~dpG~~~ta~ceS~IT~IDG~~G~L~YRGY~IedLa~~ 79 (429)
|.+-++++..-| -+..|++-++....+.+......++. .+.||+.++.++||+||+|||++|+|+||||||+||+++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~GL~Gv~v~eT~Is~Vdg~~G~L~YRGy~i~dLa~~ 86 (414)
T 3hwk_A 9 MGTLEAQTQGPGSMTGPLAAARSVAATKSMTAPTVDERP--DIKKGLAGVVVDTTAISKVVPQTNSLTYRGYPVQDLAAR 86 (414)
T ss_dssp -----------------------------------------CCCGGGTTCEEEEESSEEEETTTTEEEETTEEHHHHHHH
T ss_pred CCCHHHHHCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCC--CCCCCCCCCEEEEEECCCEECCCCEEEECCEEHHHHHHC
T ss_conf 665566524888877501321562312466898756678--899999997670425720778998899978439999755
Q ss_pred CCHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH
Q ss_conf 89899999998187999899999999886406899899999985124765257899999998752068557678788988
Q gi|254780355|r 80 SDFLEVCYLLLHGELANVSQQKDFNDKISRHALLNENMSRFFMGFPSSAHPMAMLVSAVGALSSFYYSPSGVQDLEQCVN 159 (429)
Q Consensus 80 ~sFeEVayLLl~GeLPt~~el~~F~~~l~~~~~lpe~v~~~i~~~p~~ahPM~~L~~~vsaL~a~~~~~~~~~d~~~~~~ 159 (429)
++||||+||||+|+|||++|+++|+.++..++.+|+++.++++.+|+++|||++|++++++++++++... +.+...+
T Consensus 87 ~sFEEVa~LL~~G~LPt~~el~~f~~~l~~~r~lp~~v~~~l~~~p~~~~pm~~L~~~lsal~~~~~~~~---~~~~~~~ 163 (414)
T 3hwk_A 87 CSFEQVAFLLWRGELPTDAELALFSQRERASRRVDRSMLSLLAKLPDNCHPMDVVRTAISYLGAEDPDED---DAAANRA 163 (414)
T ss_dssp CCHHHHHHHHHHSSCCCHHHHHHHHHHHHHTCCCCHHHHHHHHHSCTTSCHHHHHHHHHHHHHHTCTTTT---CGGGHHH
T ss_pred CCHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCC---CHHHHHH
T ss_conf 9999999999788796999999999999980789899999998488656707899999998663034434---5156799
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHEECCCCCCCHHHHHH
Q ss_conf 89999999999999999972798534888642468877876428984101479699999875635013678763015555
Q gi|254780355|r 160 VSLRMIAKISTIAAMIYKYSIGQPFVYPRSDLDYASNFLHMCFSVPCAEYQVNPLLARAMNRIFILHADHEQNASTSTVR 239 (429)
Q Consensus 160 ~a~rLiA~~p~i~A~~yr~~~G~~~i~Pd~~lsyaeNfL~Ml~~~~~~~~~~~~~~~~ald~~LILhADHe~NaSTft~R 239 (429)
.+++++|++|+|++++||++.|.+++.|+++++|++||++|+++. ++++..+++||++||||||||+|+||||+|
T Consensus 164 ~al~l~A~~p~i~a~~~~~~~g~~~~~p~~~ls~a~n~l~m~~g~-----~p~~~~~~~ld~~LVl~aDHg~naSTfaaR 238 (414)
T 3hwk_A 164 KAMRMMAVLPTIVAIDMRRRRGLPPIAPHSGLGYAQNFLHMCFGE-----VPETAVVSAFEQSMILYAEHGFNASTFAAR 238 (414)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCCCCCTTSCHHHHHHHHHHSS-----CCCHHHHHHHHHHHHHTSCCSSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCC-----CCCHHHHHHHHHHHHHHCCCCCCCHHHHHH
T ss_conf 999999886148999999864999878853235799999873589-----996789999999987825578871367888
Q ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCEEECCCCCCCCCCCHHHHHHH
Q ss_conf 44205654246776755421002220352899999862155351279999998214786143027743555540346899
Q gi|254780355|r 240 LAGSSGADPFACIAAGVACLGGRAHGGANEEALNMLMEIGSLERIPHYIMRAKDKNDPFRIMGFGHRVYRNHDPRCRIMR 319 (429)
Q Consensus 240 ~vaSt~adlysai~agi~aL~GPlHGGAne~v~~ml~~I~~~~~v~~~i~~~~~~~~~~ri~GfGHrvyk~~DPRa~~l~ 319 (429)
+++||++|+|+|++|||++|+||+|||||++|++|+++|++++++++||++.+++++ |||||||||||+.|||+.+++
T Consensus 239 vvaSt~ad~ysav~aal~al~GplHGgA~~~~~~~l~ei~~~~~~~~~i~~~l~~~~--~ipGFGH~vy~~~DPRa~~l~ 316 (414)
T 3hwk_A 239 VVTSTQSDIYSAVTGAIGALKGRLHGGANEAVMHDMIEIGDPANAREWLRAKLARKE--KIMGFGHRVYRHGDSRVPTMK 316 (414)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTTTHHHHHHHHHHHHHCSGGGHHHHHHHHHHTTC--CCTTBCCSSCSSCCTTHHHHH
T ss_pred HHHHCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHCCC--CCCCCCCHHCCCCCCHHHHHH
T ss_conf 886047880344444444036886545078999999985665258999999986699--777889400268997179999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999888608776517999999999996115314579877844788999998499966858999999998999999999
Q gi|254780355|r 320 ETMYEVLEVTGRFNDPIAQVAIELERIALEDEYFIERKLYPNVDFYSGITLRALGFPTNLFTVLFAVARTAGWVSQWTEM 399 (429)
Q Consensus 320 ~~~~~l~~~~~~~~~~~~~~a~~le~~a~~d~~~~~r~l~pNvDfysg~i~~~lGip~~~ft~iFa~~R~~Gw~AH~~Eq 399 (429)
++++++.+..+ .+++++++.++++ +++..|+++||||||+|++|+.||||+++||+||++||++||+|||+||
T Consensus 317 ~~~~~l~~~~~--~~~~~~~~~~i~~-----~~~~~k~l~pNvD~~~a~l~~~lGip~~~~t~lF~isR~~Gw~AH~~Eq 389 (414)
T 3hwk_A 317 RALERVGTVRD--GQRWLDIYQVLAA-----EMASATGILPNLDFPTGPAYYLMGFDIASFTPIFVMSRITGWTAHIMEQ 389 (414)
T ss_dssp HHHHHHHHHTT--CHHHHHHHHHHHH-----HHHHHHCCCBCTHHHHHHHHHHHTCCGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCC--CHHHHHHHHHHHH-----HHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99998763024--0579999999999-----9998559997618899999999595977762999999999999999998
Q ss_pred HHCCCCCCCCCCCCCCCCCCCCCCCH
Q ss_conf 70789830045621058876870685
Q gi|254780355|r 400 IVDPSRRIGRPRQLYTGALKRDYVPL 425 (429)
Q Consensus 400 ~~~~~~ri~RP~~~Y~G~~~r~y~pi 425 (429)
+++ +|||||+++|||+.+| |+|-
T Consensus 390 ~~~--~~liRP~a~YvG~~~R-~~P~ 412 (414)
T 3hwk_A 390 ATA--NALIRPLSAYCGHEQR-VLPG 412 (414)
T ss_dssp HHS--CCCCCCEEEECSCCCC-CCTT
T ss_pred HHC--CCCCCCCCEEECCCCC-CCCC
T ss_conf 207--9975868344488999-9999
No 8
>1vgp_A 373AA long hypothetical citrate synthase; open form, transferase; 2.70A {Sulfolobus tokodaii}
Probab=100.00 E-value=0 Score=815.76 Aligned_cols=371 Identities=37% Similarity=0.605 Sum_probs=351.5
Q ss_pred ECCCCCCEEEEEEEEEEEECCCCEEEECCEEHHHHHHHCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHH
Q ss_conf 88887862387875654334477789899319999750898999999981879998999999998864068998999999
Q gi|254780355|r 42 YDPAFSSTASCKSKITFIDGNNGILLYRGYPIEQLSEKSDFLEVCYLLLHGELANVSQQKDFNDKISRHALLNENMSRFF 121 (429)
Q Consensus 42 ~dpG~~~ta~ceS~IT~IDG~~G~L~YRGY~IedLa~~~sFeEVayLLl~GeLPt~~el~~F~~~l~~~~~lpe~v~~~i 121 (429)
++||+.||.+|+|+||+|||++|+|+||||+|+||+++++||||+||||+|+|||++|+++|+.++.+++.+|+.+.+.+
T Consensus 3 ~~~GL~gv~v~~T~Is~idg~~G~L~YRG~~i~dLa~~~sfEeva~LL~~G~lP~~~el~~f~~~l~~~~~lp~~~~~~~ 82 (373)
T 1vgp_A 3 IKKGLEDVYVKETEITYIDGELGRLYYRGYSIYDLAEFSNFEEVSYLILYGKLPNREELNWFQEKLREERYLPDFIIKFL 82 (373)
T ss_dssp CCTTCTTCCCCCCSSEEEETTTTEEEETTEEHHHHHHHCCHHHHHHHHHHSSCCCHHHHHHHHHHHHHTCCCCHHHHHHH
T ss_pred CCCCCCCCCEEEEECCEEECCCCEEEECCEEHHHHHCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHH
T ss_conf 79878997150577914758988799978549998526999999999984879899999999999997179998899877
Q ss_pred HHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 85124765257899999998752068557678788988899999999999999999727985348886424688778764
Q gi|254780355|r 122 MGFPSSAHPMAMLVSAVGALSSFYYSPSGVQDLEQCVNVSLRMIAKISTIAAMIYKYSIGQPFVYPRSDLDYASNFLHMC 201 (429)
Q Consensus 122 ~~~p~~ahPM~~L~~~vsaL~a~~~~~~~~~d~~~~~~~a~rLiA~~p~i~A~~yr~~~G~~~i~Pd~~lsyaeNfL~Ml 201 (429)
+.+|+++|||++|++++++|++++++.. +...+.+.+++|++|+|++++|++..|.+++.|+++++|++||++|+
T Consensus 83 ~~~~~~~~pm~~l~~~~s~l~~~~~~~~-----~~~~~~~~~l~a~~~~i~a~~~~~~~g~~~~~~~~~~~~~~~~l~~~ 157 (373)
T 1vgp_A 83 REVRKDAQPMDILRTAVSLLGIEDSKND-----ERTDIKGIKLISKFPTIVANYARLRKGLDIIEPDPKLSHSENFLYML 157 (373)
T ss_dssp HHSCTTSCHHHHHHHHHHHHHHHCCCCS-----SCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCTTSCHHHHHHHHH
T ss_pred HCCCCCCCHHHHHHHHHHHHHCCCCCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCC
T ss_conf 4156668869999999998641121232-----17799999999899999999999846998888997658999987304
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHEECCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCC
Q ss_conf 28984101479699999875635013678763015555442056542467767554210022203528999998621553
Q gi|254780355|r 202 FSVPCAEYQVNPLLARAMNRIFILHADHEQNASTSTVRLAGSSGADPFACIAAGVACLGGRAHGGANEEALNMLMEIGSL 281 (429)
Q Consensus 202 ~~~~~~~~~~~~~~~~ald~~LILhADHe~NaSTft~R~vaSt~adlysai~agi~aL~GPlHGGAne~v~~ml~~I~~~ 281 (429)
++. ++++..+++||++||||||||+|+||||+|+++||++|+|+|++||+++|+||+|||||++|++|+++|+++
T Consensus 158 ~g~-----~~~~~~~~~ld~~LIL~aDHg~n~STfaaR~~aSt~~d~~~~v~aal~al~Gp~hGga~~~~~~~l~~i~~~ 232 (373)
T 1vgp_A 158 YGD-----RPNEIKSKAMDVTLILHIDHEMNASTFASLVVASTFSDLYSSIVAGISALKGPLHGGANYEALKMFKEIGSP 232 (373)
T ss_dssp HSS-----CCCHHHHHHHHHHHHTTSCCSCCHHHHHHHHHHTTTCCHHHHHHHHHHHHTCTTSSSCCCHHHHHHHHSCSS
T ss_pred CCC-----CCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHC
T ss_conf 689-----999899999998887753578973158898886068708899999999728986566699999999998622
Q ss_pred CHHHHHHHHHHHCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 51279999998214786143027743555540346899999998886087765179999999999961153145798778
Q gi|254780355|r 282 ERIPHYIMRAKDKNDPFRIMGFGHRVYRNHDPRCRIMRETMYEVLEVTGRFNDPIAQVAIELERIALEDEYFIERKLYPN 361 (429)
Q Consensus 282 ~~v~~~i~~~~~~~~~~ri~GfGHrvyk~~DPRa~~l~~~~~~l~~~~~~~~~~~~~~a~~le~~a~~d~~~~~r~l~pN 361 (429)
+++++++.+.+.+++ |||||||||||..|||+++|+++++++....+....++++++.++++++ ++++.+|+++||
T Consensus 233 ~~~~~~~~~~~~~~~--~i~GfGH~vy~~~DPRa~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~k~l~pN 308 (373)
T 1vgp_A 233 EKVNDYILNRLSNKQ--RIMGFGHRVYKTYDPRARILKQYAKLLAEKEGGEIYTLYQIAEKVEEIG--IKYLGPKGIYPN 308 (373)
T ss_dssp SSHHHHHHHHHHTTC--CCTTBCCSSCSSCCHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH--HHHHGGGTCCBC
T ss_pred CCHHHHHHHHHHCCC--CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH--HHHCCCCCCCCC
T ss_conf 244999999997799--7767786536678967799999999998873564206899999999999--986067899827
Q ss_pred CCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHC
Q ss_conf 4478899999849996685899999999899999999970789830045621058876870685542
Q gi|254780355|r 362 VDFYSGITLRALGFPTNLFTVLFAVARTAGWVSQWTEMIVDPSRRIGRPRQLYTGALKRDYVPLEER 428 (429)
Q Consensus 362 vDfysg~i~~~lGip~~~ft~iFa~~R~~Gw~AH~~Eq~~~~~~ri~RP~~~Y~G~~~r~y~pi~~R 428 (429)
||||+|++|+.+|||+++||++|++||++||+|||+||+++ +||+||+++|||+.+|+||||++|
T Consensus 309 vD~~~~~l~~~lGip~~~~~~lf~~~R~~Gw~AH~~Eq~~~--~~liRP~~~YvG~~~r~~~~i~~R 373 (373)
T 1vgp_A 309 VDFFSSIVFYSLGFEPDFFPAVFASARVVGWVAHIMEYIKD--NKIIRPKAYYKGEIGKKYIPIDSR 373 (373)
T ss_dssp HHHHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHHHHHHGGG--CCCCCCCCCCCSCCCCCCCCSTTC
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCCCCCCEECCCCCCCCCCCCCC
T ss_conf 39899999998097967765999999999999999999747--996277642128999999771129
No 9
>2ifc_A Citrate synthase; oxaloacetate, EC 2.3.3.1, transferase; 1.70A {Thermoplasma acidophilum} PDB: 2r9e_A* 2r26_A*
Probab=100.00 E-value=0 Score=810.37 Aligned_cols=375 Identities=30% Similarity=0.530 Sum_probs=349.4
Q ss_pred ECCCCCCEEEEEEEEEEEECCCCEEEECCEEHHH-HHHHCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCHHHHHH
Q ss_conf 8888786238787565433447778989931999-975089899999998187999899999999886406899899999
Q gi|254780355|r 42 YDPAFSSTASCKSKITFIDGNNGILLYRGYPIEQ-LSEKSDFLEVCYLLLHGELANVSQQKDFNDKISRHALLNENMSRF 120 (429)
Q Consensus 42 ~dpG~~~ta~ceS~IT~IDG~~G~L~YRGY~Ied-La~~~sFeEVayLLl~GeLPt~~el~~F~~~l~~~~~lpe~v~~~ 120 (429)
+||||.+|.+|+|+||+|||++|+|+||||+|+| |+++++||||+||||+|+|||++|+++|+.+|++++.+|+++.++
T Consensus 7 ~~~GL~gv~~~~t~is~idg~~G~L~YRG~~i~dLla~~~~fEeVa~LL~~G~lPt~~el~~f~~~l~~~~~lp~~v~~~ 86 (385)
T 2ifc_A 7 ISKGLEDVNIKWTRLTTIDGNKGILRYGGYSVEDIIASGAQDEEIQYLFLYGNLPTEQELRKYKETVQKGYKIPDFVINA 86 (385)
T ss_dssp BCGGGTTCEEEEESSEEEETTTTEEEETTEEHHHHHHTTCCHHHHHHHHHHSSCCCHHHHHHHHHHHHGGGCCCHHHHHH
T ss_pred CCCCCCCCCEEEEECCEEECCCCEEEECCEEHHHHHHCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHHHHHH
T ss_conf 89887998050577905868988799978759999843899999999998488989999999999999716783999999
Q ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 98512476525789999999875206855767878898889999999999999999972798534888642468877876
Q gi|254780355|r 121 FMGFPSSAHPMAMLVSAVGALSSFYYSPSGVQDLEQCVNVSLRMIAKISTIAAMIYKYSIGQPFVYPRSDLDYASNFLHM 200 (429)
Q Consensus 121 i~~~p~~ahPM~~L~~~vsaL~a~~~~~~~~~d~~~~~~~a~rLiA~~p~i~A~~yr~~~G~~~i~Pd~~lsyaeNfL~M 200 (429)
++.+|+++|||++++++++++++.++.... +.+...+.+.|++|++|++++++|++..|.++..|+++++|++|||+|
T Consensus 87 i~~~p~~~~pm~~l~~ai~~l~~~~~~~~~--~~~~~~~~a~~l~a~~p~i~a~~~~~~~~~~~~~p~~~~~~a~~~l~m 164 (385)
T 2ifc_A 87 IRQLPRESDAVAMQMAAVAAMAASETKFKW--NKDTDRDVAAEMIGRMSAITVNVYRHIMNMPAELPKPSDSYAESFLNA 164 (385)
T ss_dssp HHTSCTTSCHHHHHHHHHHHHHHHCTTCCC--CTTTHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCCCSCHHHHHHHH
T ss_pred HHHCCCCCCCHHHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHH
T ss_conf 972887688178888888876532112343--257777569989999999999999986489877887544647777776
Q ss_pred HCCCCCCCCCCCHHHHHHHHHHHHEECCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCC
Q ss_conf 42898410147969999987563501367876301555544205654246776755421002220352899999862155
Q gi|254780355|r 201 CFSVPCAEYQVNPLLARAMNRIFILHADHEQNASTSTVRLAGSSGADPFACIAAGVACLGGRAHGGANEEALNMLMEIGS 280 (429)
Q Consensus 201 l~~~~~~~~~~~~~~~~ald~~LILhADHe~NaSTft~R~vaSt~adlysai~agi~aL~GPlHGGAne~v~~ml~~I~~ 280 (429)
+++. .+++..+++||++||||||||+|+||||+|+++||++|+|+|++||+++|+||+|||||++|++||+++++
T Consensus 165 ~~g~-----~~~~~~~~~l~~~Lvl~aDHg~n~St~aar~~aSt~ad~y~~v~aa~~al~Gplhgga~~~~~~~l~~~~~ 239 (385)
T 2ifc_A 165 AFGR-----KATKEEIDAMNTALILYTDHEVPASTTAGLVAVSTLSDMYSGITAALAALKGPLHGGAAEAAIAQFDEIKD 239 (385)
T ss_dssp HHTS-----CCCHHHHHHHHHHHHHTSCCSSCHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTTSSHHHHHHHHHHHHCS
T ss_pred HCCC-----CCCHHHHHHHHHHHHHHCCCCCCCCCHHHEEEECCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCC
T ss_conf 4378-----79889999999999895468998732102022025873889998764302454466601558899998544
Q ss_pred CCHHHHHHHHH-HHCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 35127999999-82147861430277435555403468999999988860877651799999999999611531457987
Q gi|254780355|r 281 LERIPHYIMRA-KDKNDPFRIMGFGHRVYRNHDPRCRIMRETMYEVLEVTGRFNDPIAQVAIELERIALEDEYFIERKLY 359 (429)
Q Consensus 281 ~~~v~~~i~~~-~~~~~~~ri~GfGHrvyk~~DPRa~~l~~~~~~l~~~~~~~~~~~~~~a~~le~~a~~d~~~~~r~l~ 359 (429)
++++++++.+. +++++ |||||||||||..|||+++|++++.++..... ..+++++++.++|+++. +++.+|++|
T Consensus 240 ~~~~~~~~~~~~~~~~~--~ipGfGH~v~~~~DPRa~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--~~~~~k~l~ 314 (385)
T 2ifc_A 240 PAMVEKWFNDNIINGKK--RLMGFGHRVYKTYDPRAKIFKGIAEKLSSKKP-EVHKVYEIATKLEDFGI--KAFGSKGIY 314 (385)
T ss_dssp GGGHHHHHHHHTTTSSS--CCTTBCCSSCSSCCHHHHHHHHHHHHHHHTSH-HHHHHHHHHHHHHHHHH--HHHGGGTCC
T ss_pred HHHHHHHHHHHHHHCCC--CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHH--HHCCCCCCC
T ss_conf 65567899999862123--46576876578889769999999999986147-40489999999999999--732457988
Q ss_pred CCCCHHHHHHHHHCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHCC
Q ss_conf 78447889999984999--66858999999998999999999707898300456210588768706855429
Q gi|254780355|r 360 PNVDFYSGITLRALGFP--TNLFTVLFAVARTAGWVSQWTEMIVDPSRRIGRPRQLYTGALKRDYVPLEERE 429 (429)
Q Consensus 360 pNvDfysg~i~~~lGip--~~~ft~iFa~~R~~Gw~AH~~Eq~~~~~~ri~RP~~~Y~G~~~r~y~pi~~R~ 429 (429)
||||||+|++|+.+||| +++||++|++||++||+|||+||++++ +||+||+++|+||.+|+|+||++||
T Consensus 315 pNvD~~~~~l~~~lglp~~~~~~t~lf~i~R~~G~~AH~~Eq~~~~-~~i~RP~~~Y~G~~~r~y~p~~~r~ 385 (385)
T 2ifc_A 315 PNTDYFSGIVYMSIGFPLRNNIYTALFALSRVTGWQAHFIEYVEEQ-QRLIRPRAVYVGPAERKYVPIAERK 385 (385)
T ss_dssp BCTTTTHHHHHHHHTCCSGGGHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCCCEEEECSCCCCCCCCGGGC-
T ss_pred CCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCCCCCCCCCCCCCCCCCCCHHHCC
T ss_conf 7818999999998599983105689999999999999999998568-9863776522699889997767569
No 10
>1aj8_A Citrate synthase; hyperthermostable, lyase; HET: COA CIT; 1.90A {Pyrococcus furiosus} SCOP: a.103.1.1
Probab=100.00 E-value=0 Score=796.15 Aligned_cols=370 Identities=35% Similarity=0.599 Sum_probs=354.7
Q ss_pred CCCCCCEEEEEEEEEEEECCCCEEEECCEEHHHHHHHCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 88878623878756543344777898993199997508989999999818799989999999988640689989999998
Q gi|254780355|r 43 DPAFSSTASCKSKITFIDGNNGILLYRGYPIEQLSEKSDFLEVCYLLLHGELANVSQQKDFNDKISRHALLNENMSRFFM 122 (429)
Q Consensus 43 dpG~~~ta~ceS~IT~IDG~~G~L~YRGY~IedLa~~~sFeEVayLLl~GeLPt~~el~~F~~~l~~~~~lpe~v~~~i~ 122 (429)
+-|+.||.+|+|+||+|||++|+|+||||+|+||+++++||||+||||+|+|||++|+++|+.+|++++.+|+.+..++.
T Consensus 2 ~rGL~gv~v~~T~IS~IDg~~G~L~YRGy~i~dLa~~~tfEEVa~LL~~G~lP~~~el~~f~~~L~~~~~lp~~~~~~~~ 81 (371)
T 1aj8_A 2 AKGLEDVYIDQTNICYIDGKEGKLYYRGYSVEELAELSTFEEVVYLLWWGKLPSLSELENFKKELAKSRGLPKEVIEIME 81 (371)
T ss_dssp CGGGTTCEEEEESSEEEETTTTEEEETTEEHHHHHHHCCHHHHHHHHHHSSCCCHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred CCCCCCCEEEEEECEEEECCCCEEEECCEEHHHHHCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHH
T ss_conf 97779981636868037579887999894499986369999999999778798999999999999971699888999985
Q ss_pred HHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 51247652578999999987520685576787889888999999999999999997279853488864246887787642
Q gi|254780355|r 123 GFPSSAHPMAMLVSAVGALSSFYYSPSGVQDLEQCVNVSLRMIAKISTIAAMIYKYSIGQPFVYPRSDLDYASNFLHMCF 202 (429)
Q Consensus 123 ~~p~~ahPM~~L~~~vsaL~a~~~~~~~~~d~~~~~~~a~rLiA~~p~i~A~~yr~~~G~~~i~Pd~~lsyaeNfL~Ml~ 202 (429)
.+|+++|||++++++++++++++++..+..+++.....+.+++|++|++++++|+++.|++++.|+++++|++||++|++
T Consensus 82 ~~p~~~~pm~~l~~~~s~l~~~~~~~~~~~~~~~~~~~~~~l~a~~~~i~a~~~~~~~g~~~~~p~~~~s~~~~~l~ml~ 161 (371)
T 1aj8_A 82 ALPKNTHPMGALRTIISYLGNIDDSGDIPVTPEEVYRIGISVTAKIPTIVANWYRIKNGLEYVPPKEKLSHAANFLYMLH 161 (371)
T ss_dssp HSCTTCCHHHHHHHHHHHHHHHSTTTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCTTSCHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHC
T ss_conf 08877772565566642123211112454787888999999999999999999998679988799710408999987742
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHEECCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCC
Q ss_conf 89841014796999998756350136787630155554420565424677675542100222035289999986215535
Q gi|254780355|r 203 SVPCAEYQVNPLLARAMNRIFILHADHEQNASTSTVRLAGSSGADPFACIAAGVACLGGRAHGGANEEALNMLMEIGSLE 282 (429)
Q Consensus 203 ~~~~~~~~~~~~~~~ald~~LILhADHe~NaSTft~R~vaSt~adlysai~agi~aL~GPlHGGAne~v~~ml~~I~~~~ 282 (429)
+. ++++..+++||++||||||||+|+||||+|+++||++|+|+|++||+++|+||+||||+++|++||.++++++
T Consensus 162 g~-----~~~~~~~~~l~~~Lvl~aDHg~~~St~aaR~~aSt~~~~~~a~~ag~~al~Gp~hgga~~~~~~~l~~~~~~~ 236 (371)
T 1aj8_A 162 GE-----EPPKEWEKAMDVALILYAEHEINASTLAVMTVGSTLSDYYSAILAGIGALKGPIHGGAVEEAIKQFMEIGSPE 236 (371)
T ss_dssp SS-----CCCHHHHHHHHHHHHHHSCCSSCHHHHHHHHHHTTTCCHHHHHHHHHHHHHSTTTTTHHHHHHHHHHHHCSGG
T ss_pred CC-----CCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCC
T ss_conf 89-----9988999999999999656888833899988861575087889877663279654221577899999735631
Q ss_pred HHHHHHHHHHHCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 12799999982147861430277435555403468999999988860877651799999999999611531457987784
Q gi|254780355|r 283 RIPHYIMRAKDKNDPFRIMGFGHRVYRNHDPRCRIMRETMYEVLEVTGRFNDPIAQVAIELERIALEDEYFIERKLYPNV 362 (429)
Q Consensus 283 ~v~~~i~~~~~~~~~~ri~GfGHrvyk~~DPRa~~l~~~~~~l~~~~~~~~~~~~~~a~~le~~a~~d~~~~~r~l~pNv 362 (429)
++++||.+.+++++ +||||||||||..|||+++++++++++. .++.++.+.++++++ ++++.+|+++|||
T Consensus 237 ~~~~~v~~~~~~~~--~ipGfGH~v~~~~DpR~~~l~~~a~~~~------~~~~~~~~~~~~~~~--~~~~~~~~l~~Nv 306 (371)
T 1aj8_A 237 KVEEWFFKALQQKR--KIMGAGHRVYKTYDPRARIFKKYASKLG------DKKLFEIAERLERLV--EEYLSKKGISINV 306 (371)
T ss_dssp GHHHHHHHHHHHTC--CCTTBCCSSCSSCCHHHHHHHHHHHHHS------CHHHHHHHHHHHHHH--HHHTTTTTCCBCT
T ss_pred CHHHHHHHHHHCCC--CCCCCCCCCCCCCCCHHHHHHHHHHHHC------CHHHHHHHHHHHHHH--HHHHHHCCCCCCH
T ss_conf 07999998863278--7878887536789956899999999856------102578999999999--9986006988373
Q ss_pred CHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHCC
Q ss_conf 4788999998499966858999999998999999999707898300456210588768706855429
Q gi|254780355|r 363 DFYSGITLRALGFPTNLFTVLFAVARTAGWVSQWTEMIVDPSRRIGRPRQLYTGALKRDYVPLEERE 429 (429)
Q Consensus 363 Dfysg~i~~~lGip~~~ft~iFa~~R~~Gw~AH~~Eq~~~~~~ri~RP~~~Y~G~~~r~y~pi~~R~ 429 (429)
|||+|++|+.||||+++||++|++||++||+|||+||+++ +||+||+++|||+.+|+|+||++||
T Consensus 307 d~~~~~l~~~lg~p~~~~~~lf~~~R~~G~~AH~~Eq~~~--~~l~RP~~~Y~G~~~r~~~p~~~r~ 371 (371)
T 1aj8_A 307 DYWSGLVFYGMKIPIELYTTIFAMGRIAGWTAHLAEYVSH--NRIIRPRLQYVGEIGKKYLPIELRR 371 (371)
T ss_dssp TTTHHHHHHTTTCCGGGHHHHHHHHHHHHHHHHHHHHHTT--CCCCCCEEEECSCCCBCCCCGGGCC
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCCCCCCCCCCCCCCCCCCHHHCC
T ss_conf 8899999998399844444999999999999999999877--9987866520289899987867669
No 11
>1o7x_A Citrate synthase; lyase, tricarboxylic acid cycle; 2.7A {Sulfolobus solfataricus} SCOP: a.103.1.1
Probab=100.00 E-value=0 Score=799.91 Aligned_cols=376 Identities=32% Similarity=0.568 Sum_probs=349.6
Q ss_pred EEEECCCCCCEEEEEEEEEEEECCCCEEEECCEEHHHHHHHCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCHHHH
Q ss_conf 18988887862387875654334477789899319999750898999999981879998999999998864068998999
Q gi|254780355|r 39 IFTYDPAFSSTASCKSKITFIDGNNGILLYRGYPIEQLSEKSDFLEVCYLLLHGELANVSQQKDFNDKISRHALLNENMS 118 (429)
Q Consensus 39 ~~~~dpG~~~ta~ceS~IT~IDG~~G~L~YRGY~IedLa~~~sFeEVayLLl~GeLPt~~el~~F~~~l~~~~~lpe~v~ 118 (429)
+.++|||+.||.+|+|+||+|||++|+|+||||+|+||+++++||||+||||+|+|||++|+++|+++|++++.+|+++.
T Consensus 1 ~~~~~~Gl~gv~~~~t~is~id~~~G~L~YRG~~i~dLa~~~sfEeva~LL~~G~lP~~~el~~f~~~L~~~~~lp~~~~ 80 (377)
T 1o7x_A 1 MSVVSKGLENVIIKVTNLTFIDGEKGILRYRGYNIEDLVNYGSYEETIYLMLYGKLPTKKELNDLKAKLNEEYEVPQEVL 80 (377)
T ss_dssp --CBCGGGTTCEEEEESSEEEETTTTEEEETTEEHHHHHHHCCHHHHHHHHHHSSCCCHHHHHHHHHHHHTCCCCCHHHH
T ss_pred CCCCCCCCCCCEEEEEECCEEECCCCEEEECCEEHHHHHCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHHHH
T ss_conf 98778777998073786802868988799988129998504999999999986989699999999999998567989999
Q ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH
Q ss_conf 99985124765257899999998752068557678788988899999999999999999727985348886424688778
Q gi|254780355|r 119 RFFMGFPSSAHPMAMLVSAVGALSSFYYSPSGVQDLEQCVNVSLRMIAKISTIAAMIYKYSIGQPFVYPRSDLDYASNFL 198 (429)
Q Consensus 119 ~~i~~~p~~ahPM~~L~~~vsaL~a~~~~~~~~~d~~~~~~~a~rLiA~~p~i~A~~yr~~~G~~~i~Pd~~lsyaeNfL 198 (429)
+++..+|+++|||++|+++++++++++++..+. +...+.+++++|++|++++++|++..|+++..|+++++|++||+
T Consensus 81 ~~~~~~p~~~~pm~~l~~~v~~l~~~~~~~~~~---~~~~~~~~~l~A~~~~i~a~~~~~~~g~~~~~p~~~~~~~~~~~ 157 (377)
T 1o7x_A 81 DTIYLMPKEADAIGLLEVGTAALASIDKNFKWK---ENDKEKAISIIAKMATLVANVYRRKEGNKPRIPEPSDSFAKSFL 157 (377)
T ss_dssp HHHHHSCTTSCHHHHHHHHHHHHHHHCCCCCSS---SSHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCCCSCHHHHHH
T ss_pred HHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCH---HHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHH
T ss_conf 999857777455788999999998764401441---44468899886033178899998765998778975346999998
Q ss_pred HHHCCCCCCCCCCCHHHHHHHHHHHHEECCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHC
Q ss_conf 76428984101479699999875635013678763015555442056542467767554210022203528999998621
Q gi|254780355|r 199 HMCFSVPCAEYQVNPLLARAMNRIFILHADHEQNASTSTVRLAGSSGADPFACIAAGVACLGGRAHGGANEEALNMLMEI 278 (429)
Q Consensus 199 ~Ml~~~~~~~~~~~~~~~~ald~~LILhADHe~NaSTft~R~vaSt~adlysai~agi~aL~GPlHGGAne~v~~ml~~I 278 (429)
+|+.+. ++++..+|+||++||||||||+|+||||+|+++||++|+|+|++||+++|+||+|||||++|++|+.++
T Consensus 158 ~~~~g~-----~p~~~~~r~ld~~Lvl~aDHg~n~STfaaRvvaSt~~d~y~a~~aa~~al~Gplhgga~~~~~~~l~e~ 232 (377)
T 1o7x_A 158 LASFAR-----EPTTDEINAMDKALILYTDHEVPASTTAALVAASTLSDMYSSLTAALAALKGPLHGGAAEEAFKQFIEI 232 (377)
T ss_dssp HHHHSS-----CCCHHHHHHHHHHHHHHSCCSCCHHHHHHHHHHHTTCCHHHHHHHHHHHHTSTTTTTHHHHHHHHHHHH
T ss_pred HHHCCC-----CCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHH
T ss_conf 875189-----961899999988871102479884210000345227761124777777516863335399999999982
Q ss_pred CCCCHHHHHHHH-HHHCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 553512799999-9821478614302774355554034689999999888608776517999999999996115314579
Q gi|254780355|r 279 GSLERIPHYIMR-AKDKNDPFRIMGFGHRVYRNHDPRCRIMRETMYEVLEVTGRFNDPIAQVAIELERIALEDEYFIERK 357 (429)
Q Consensus 279 ~~~~~v~~~i~~-~~~~~~~~ri~GfGHrvyk~~DPRa~~l~~~~~~l~~~~~~~~~~~~~~a~~le~~a~~d~~~~~r~ 357 (429)
++.+++++++.+ .+++++ |||||||||||..|||+.+|+++++++..+.+ ..+++++++.++|+++.+ .+..|+
T Consensus 233 ~~~~~~~~~~~~~~~~~~~--~i~GFGH~vy~~~DPRa~~L~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~k~ 307 (377)
T 1o7x_A 233 GDPNRVQNWFNDKVVNQKN--RLMGFGHRVYKTYDPRAKIFKKLALTLIERNA-DARRYFEIAQKLEELGIK--QFSSKG 307 (377)
T ss_dssp CSGGGHHHHHHHHTTTTCC--CCTTBCCSSCSSCCHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHHHHHH--HHTTTT
T ss_pred CCCHHHHHHHHHHHHHCCC--CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHH--HCCCCC
T ss_conf 5810138899999972557--77787875467899669999999999876225-512688999999999986--213469
Q ss_pred CCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHC
Q ss_conf 87784478899999849996685899999999899999999970789830045621058876870685542
Q gi|254780355|r 358 LYPNVDFYSGITLRALGFPTNLFTVLFAVARTAGWVSQWTEMIVDPSRRIGRPRQLYTGALKRDYVPLEER 428 (429)
Q Consensus 358 l~pNvDfysg~i~~~lGip~~~ft~iFa~~R~~Gw~AH~~Eq~~~~~~ri~RP~~~Y~G~~~r~y~pi~~R 428 (429)
++||||||+|++|+.||||+++||+||++||++||+|||+||++++ +||+||+++||||.+|+|+||++|
T Consensus 308 l~pNvD~~~~~l~~~lGip~~~~~~lf~~sR~~Gw~AH~~Eq~~~~-~~l~RP~~~Y~G~~~r~~~~~~~R 377 (377)
T 1o7x_A 308 IYPNTDFYSGIVFYALGFPVYMFTALFALSRTLGWLAHIIEYVEEQ-HRLIRPRALYVGPEYQEYVSIDKR 377 (377)
T ss_dssp CCBCTTTTHHHHHHHHTCCGGGHHHHHHHHHHHHHHHHHHHHHHHS-CCCCCCEEEECSCSCC--------
T ss_pred CCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCCCCCCCEECCCCCCCCCCCCCC
T ss_conf 8818188999999980988555569999999999999999998568-995186751259999898772239
No 12
>2c6x_A Citrate synthase 1; tricarboxylic acid cycle, transferase, allosteric enzyme, enzyme thermostability; HET: COZ CIT; 3.4A {Bacillus subtilis}
Probab=100.00 E-value=0 Score=778.09 Aligned_cols=360 Identities=31% Similarity=0.515 Sum_probs=335.0
Q ss_pred CCCCCCEEEEEEEEEEEECCCCEEEECCEEHHHHHHHCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 88878623878756543344777898993199997508989999999818799989999999988640689989999998
Q gi|254780355|r 43 DPAFSSTASCKSKITFIDGNNGILLYRGYPIEQLSEKSDFLEVCYLLLHGELANVSQQKDFNDKISRHALLNENMSRFFM 122 (429)
Q Consensus 43 dpG~~~ta~ceS~IT~IDG~~G~L~YRGY~IedLa~~~sFeEVayLLl~GeLPt~~el~~F~~~l~~~~~lpe~v~~~i~ 122 (429)
..|+.++.+|+|+||+|||++|+|+||||+|+||+++++||||+||||+|+|||++|+++|+.+|.+++.+|+++.+++.
T Consensus 2 ~~GL~Gv~v~~t~Is~Id~e~G~L~YRG~~i~dLa~~~tfEeVa~LL~~G~lP~~~el~~f~~~l~~~~~~p~~~~~~l~ 81 (363)
T 2c6x_A 2 HYGLKGITCVETSISHIDGEKGRLIYRGHHAKDIALNHSFEEAAYLILFGKLPSTEELQVFKDKLAAERNLPEHIERLIQ 81 (363)
T ss_dssp CGGGTTCCCEEESSEEEETTTTEEEETTEEHHHHHHHSCHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred CCCCCCCEEEEEECCEEECCCCEEEECCCCHHHHHCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHH
T ss_conf 98889981726657258589887998795199986059999999999778695999999999999980679888999886
Q ss_pred HHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 51247652578999999987520685576787889888999999999999999997279853488864246887787642
Q gi|254780355|r 123 GFPSSAHPMAMLVSAVGALSSFYYSPSGVQDLEQCVNVSLRMIAKISTIAAMIYKYSIGQPFVYPRSDLDYASNFLHMCF 202 (429)
Q Consensus 123 ~~p~~ahPM~~L~~~vsaL~a~~~~~~~~~d~~~~~~~a~rLiA~~p~i~A~~yr~~~G~~~i~Pd~~lsyaeNfL~Ml~ 202 (429)
.+|+++|||++|++++++|++++++..+ ..+.+++++|++|+++|++|+++.|++++.|+++++|++||++|++
T Consensus 82 ~~~~~~~pm~~l~~~~sal~~~~~~~~~------~~~~~~~l~a~~~~i~a~~~~~~~g~~~~~p~~~~~~~~nfl~ml~ 155 (363)
T 2c6x_A 82 SLPNNMDDMSVLRTVVSALGENTYTFHP------KTEEAIRLIAITPSIIAYRKRWTRGEQAIAPSSQYGHVENYYYMLT 155 (363)
T ss_dssp HSCSSSCHHHHHHHHHHHHCCSSCCSSC------CHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCTTSCSHHHHHHHHH
T ss_pred HCCCCCCCHHHHHHHHHHCCCCCCCCCH------HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHC
T ss_conf 0154568279999999864677765212------3468999999827889999998659987789876787889987505
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHEECCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCC
Q ss_conf 89841014796999998756350136787630155554420565424677675542100222035289999986215535
Q gi|254780355|r 203 SVPCAEYQVNPLLARAMNRIFILHADHEQNASTSTVRLAGSSGADPFACIAAGVACLGGRAHGGANEEALNMLMEIGSLE 282 (429)
Q Consensus 203 ~~~~~~~~~~~~~~~ald~~LILhADHe~NaSTft~R~vaSt~adlysai~agi~aL~GPlHGGAne~v~~ml~~I~~~~ 282 (429)
+. ++++..+++||++||||||||+|+|||++|+++||++|+|+||+||+++|+||+|||||++|++|++++++++
T Consensus 156 g~-----~p~~~~~~~l~~~Lvl~aDHg~n~StfaaR~~aSt~~~~~~av~a~l~al~Gp~hGga~~~~~~~~~~~~~~~ 230 (363)
T 2c6x_A 156 GE-----QPSEAKKKALETYMILATEHGMNASTFSARVTLSTESDLVSAVTAALGTMKGPLHGGAPSAVTKMLEDIGEKE 230 (363)
T ss_dssp SS-----CCCHHHHHHHHHHHHHHHCCSSCHHHHHHHHHHTTTCCHHHHHHHHHHHHHSTTSSCCCHHHHHHHHTCCSST
T ss_pred CC-----CCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCC
T ss_conf 89-----9988999999999999806887740245443322687088889999986189756547999999999853540
Q ss_pred HHHHHHHHHHHCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH--HHHHHHCCCCCCCC
Q ss_conf 1279999998214786143027743555540346899999998886087765179999999999--96115314579877
Q gi|254780355|r 283 RIPHYIMRAKDKNDPFRIMGFGHRVYRNHDPRCRIMRETMYEVLEVTGRFNDPIAQVAIELERI--ALEDEYFIERKLYP 360 (429)
Q Consensus 283 ~v~~~i~~~~~~~~~~ri~GfGHrvyk~~DPRa~~l~~~~~~l~~~~~~~~~~~~~~a~~le~~--a~~d~~~~~r~l~p 360 (429)
++++++++.+++++ |||||||||||..|||+++|+++++++.. .++..+.+.+++.. ...++++..|+|+|
T Consensus 231 ~~~~~v~~~l~~~~--~l~GfGH~vy~~~DPRa~~l~~~~~~l~~-----~~~~~~~~~~~~~~~~~~~~~~~~~k~l~p 303 (363)
T 2c6x_A 231 HAEAYLKEKLEKGE--RLMGFGHRVYKTKDPRAEALRQKAEEVAG-----NDRDLDLALHVEAEAIRLLEIYKPGRKLYT 303 (363)
T ss_dssp THHHHHHHHHHTTC--CCTTBCCSSCSSCCHHHHHHHHHHHHTTT-----SCHHHHHHHHHHHHHHHHHHHHSCSSCCCB
T ss_pred CHHHHHHHHHHCCC--CCCCCCCCCCCCCCCHHHHHHHHHHHHHC-----CCCCHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 17999999986699--65478876588899507999999999844-----375178999779999999998615799886
Q ss_pred CCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 84478899999849996685899999999899999999970789830045621058876870
Q gi|254780355|r 361 NVDFYSGITLRALGFPTNLFTVLFAVARTAGWVSQWTEMIVDPSRRIGRPRQLYTGALKRDY 422 (429)
Q Consensus 361 NvDfysg~i~~~lGip~~~ft~iFa~~R~~Gw~AH~~Eq~~~~~~ri~RP~~~Y~G~~~r~y 422 (429)
|||||+|++|+.||||+++||++|++||++||+|||+||+++ +||+||+++||||.+|+.
T Consensus 304 Nvd~~~~~l~~~lG~p~~~~~~lf~~~R~~Gw~AH~~Eq~~~--~~l~RP~~~YvG~~pr~~ 363 (363)
T 2c6x_A 304 NVEFYAAAVMRAIDFDDELFTPTFSASRMVGWCAHVLEQAEN--NMIFRPSAQYTGAIPEEV 363 (363)
T ss_dssp CTHHHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHHHHHHTTT--CCCCCCEEEECSCCCCCC
T ss_pred CHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCC--CCCCCCCCEECCCCCCCC
T ss_conf 818999999999197967777999999999999999998307--985076733269898889
No 13
>1vgm_A 378AA long hypothetical citrate synthase; open form, transferase; 2.00A {Sulfolobus tokodaii}
Probab=100.00 E-value=0 Score=773.87 Aligned_cols=373 Identities=35% Similarity=0.576 Sum_probs=343.6
Q ss_pred ECCCCCCEEEEEEEEEEEECCCCEEEECCEEHHHHHHHCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHH
Q ss_conf 88887862387875654334477789899319999750898999999981879998999999998864068998999999
Q gi|254780355|r 42 YDPAFSSTASCKSKITFIDGNNGILLYRGYPIEQLSEKSDFLEVCYLLLHGELANVSQQKDFNDKISRHALLNENMSRFF 121 (429)
Q Consensus 42 ~dpG~~~ta~ceS~IT~IDG~~G~L~YRGY~IedLa~~~sFeEVayLLl~GeLPt~~el~~F~~~l~~~~~lpe~v~~~i 121 (429)
+.+||.||.+++|+||+|||++|+|+||||+|+||+++++||||+||||+|+|||++|+++|+.++.+++.+|+++.+.+
T Consensus 5 ~~~GL~gv~v~~T~Is~id~~~G~L~YRG~~i~dLa~~~sfEeVa~LL~~G~lP~~~el~~~~~~l~~~~~lp~~~~~~~ 84 (378)
T 1vgm_A 5 VSRGLENVIIKTTGLTYIDGINGILRYRGYDINDLVNYASYEELIHLMLYGELPNRQQLNQIKGIINESFEVPEQVISTI 84 (378)
T ss_dssp CSGGGTTCEEEEESSEEEETTTTEEEETTEEHHHHHHHCCHHHHHHHHHHSSCCCHHHHHHHHHHHHTCCCCCHHHHHHH
T ss_pred CCCCCCCCEEEEEECCCEECCCCEEEECCEEHHHHHCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHH
T ss_conf 68888997374777840758898899989539998616999999999977979699999999999987078979999999
Q ss_pred HHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 85124765257899999998752068557678788988899999999999999999727985348886424688778764
Q gi|254780355|r 122 MGFPSSAHPMAMLVSAVGALSSFYYSPSGVQDLEQCVNVSLRMIAKISTIAAMIYKYSIGQPFVYPRSDLDYASNFLHMC 201 (429)
Q Consensus 122 ~~~p~~ahPM~~L~~~vsaL~a~~~~~~~~~d~~~~~~~a~rLiA~~p~i~A~~yr~~~G~~~i~Pd~~lsyaeNfL~Ml 201 (429)
..+|+++|||++++++++.+++.++...+. +...+...++++++|+|++++||+..|.++..|++++++++||++|+
T Consensus 85 ~~~~~~~~pm~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~l~a~~~~i~a~~~~~~~g~~~~~p~~~~~~~~~~l~~~ 161 (378)
T 1vgm_A 85 FSMPRNCDAIGMMETAFGILASIYDPKWNR---ATNKELAVQIIAKTATITANIYRAKEGLKPKIPEPSESYAESFLAAT 161 (378)
T ss_dssp TTSCTTSCHHHHHHHHHHHHHHHHCCCCCT---TTHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCCCSCHHHHHHHHH
T ss_pred HHCCCCCCCHHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 827765683788888888765320210222---34678999987551899999999867997668963237899999985
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHEECCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCC
Q ss_conf 28984101479699999875635013678763015555442056542467767554210022203528999998621553
Q gi|254780355|r 202 FSVPCAEYQVNPLLARAMNRIFILHADHEQNASTSTVRLAGSSGADPFACIAAGVACLGGRAHGGANEEALNMLMEIGSL 281 (429)
Q Consensus 202 ~~~~~~~~~~~~~~~~ald~~LILhADHe~NaSTft~R~vaSt~adlysai~agi~aL~GPlHGGAne~v~~ml~~I~~~ 281 (429)
++. ++++..+++||++||||||||+|+|||++|+++||++|+|+|++||+++|+||+|||||++|++|++++++.
T Consensus 162 ~g~-----~p~~~~~~~l~~~Lil~aDHg~n~St~a~R~~ast~ad~~~~v~agl~~l~G~~hgga~~~~~~~~~~~~~~ 236 (378)
T 1vgm_A 162 FGK-----KPTQEEIKAMDASLILYTDHEVPASTTAALVASSTLSDMYSCIVAALAALKGPLHGGAAEEAFKQFVEIGSV 236 (378)
T ss_dssp HSS-----CCCHHHHHHHHHHHHHTSCCSCCHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTTSCHHHHHHHHHHHHCSG
T ss_pred CCC-----CCCHHHHHHHHHHHHHHCCCCCCCCCHHHEEEECCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCC
T ss_conf 699-----998899999999987841378774022211222268417788886653124775545699999999972354
Q ss_pred CHHHHHHHHH-HHCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 5127999999-821478614302774355554034689999999888608776517999999999996115314579877
Q gi|254780355|r 282 ERIPHYIMRA-KDKNDPFRIMGFGHRVYRNHDPRCRIMRETMYEVLEVTGRFNDPIAQVAIELERIALEDEYFIERKLYP 360 (429)
Q Consensus 282 ~~v~~~i~~~-~~~~~~~ri~GfGHrvyk~~DPRa~~l~~~~~~l~~~~~~~~~~~~~~a~~le~~a~~d~~~~~r~l~p 360 (429)
++.+.++.+. +++++ |||||||||||..|||+++|+++++++....+ ...++++++.++|+++ .+++.+|+|+|
T Consensus 237 ~~~~~~~~~~~~~~~~--~ipGfGH~vy~~~DPRa~~L~~~~~~~~~~~~-~~~~~~~l~~~~~~~~--~~~~~~k~l~p 311 (378)
T 1vgm_A 237 ENADKWFEEKIIKGKS--RLMGFGHRVYKTYDPRAKIFKTLAKSFAEKNE-NVKKYYEIAERIEKLG--VDTFGSKHIYP 311 (378)
T ss_dssp GGHHHHHHHHTTTSCC--CCTTBCCSSCSSCCHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHHHH--HHHHGGGTCCB
T ss_pred CCHHHHHHHHHHCCCC--CCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHH--HHHHCCCCCCC
T ss_conf 2426788777641566--45377875357899769999999999886445-3068999999999999--98503579872
Q ss_pred CCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHC
Q ss_conf 84478899999849996685899999999899999999970789830045621058876870685542
Q gi|254780355|r 361 NVDFYSGITLRALGFPTNLFTVLFAVARTAGWVSQWTEMIVDPSRRIGRPRQLYTGALKRDYVPLEER 428 (429)
Q Consensus 361 NvDfysg~i~~~lGip~~~ft~iFa~~R~~Gw~AH~~Eq~~~~~~ri~RP~~~Y~G~~~r~y~pi~~R 428 (429)
|||||+|++|+.+|||+++||++|++||++||+|||+||++++ +||+||+++||||.+|+|+||++|
T Consensus 312 Nvd~~~~~l~~~lG~p~~~~~~lf~i~R~~Gw~AH~~Eq~~~~-~~l~RP~~~Y~G~~~r~~~~~~~r 378 (378)
T 1vgm_A 312 NTDFYSGIVFYALGFPIYMFTSLFALSRVLGWLAHIIEYVEEQ-HRLIRPRALYIGPEKREFKPIELR 378 (378)
T ss_dssp CTTTTHHHHHHHTTCCGGGHHHHHHHHHHHHHHHHHHHHHHHS-CCCCCCEEEECSCCCCCCCCGGGC
T ss_pred CHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCCCCCCCEECCCCCCCCCCCCCC
T ss_conf 7799999999994959453108999999999999999998568-996485542049999999771239
No 14
>1a59_A Citrate synthase; cold-activity; HET: COA CIT; 2.09A {Antarctic bacterium ds2-3r} SCOP: a.103.1.1
Probab=100.00 E-value=0 Score=772.72 Aligned_cols=366 Identities=31% Similarity=0.521 Sum_probs=345.4
Q ss_pred EECCCCCCEEEEEEEEEEEECCCCEEEECCEEHHHHHHHCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCHHHHHH
Q ss_conf 98888786238787565433447778989931999975089899999998187999899999999886406899899999
Q gi|254780355|r 41 TYDPAFSSTASCKSKITFIDGNNGILLYRGYPIEQLSEKSDFLEVCYLLLHGELANVSQQKDFNDKISRHALLNENMSRF 120 (429)
Q Consensus 41 ~~dpG~~~ta~ceS~IT~IDG~~G~L~YRGY~IedLa~~~sFeEVayLLl~GeLPt~~el~~F~~~l~~~~~lpe~v~~~ 120 (429)
+++||+.++.+++|+||+|||++|+|+||||+|+||+++++||||+||||+|+|||++|+++|+.++.+++.+|+++.++
T Consensus 4 ~~~~GL~gv~v~~t~is~id~~~G~L~YRG~~i~eLa~~~sfEeva~LL~~G~lP~~~el~~f~~~l~~~~~lp~~~~~~ 83 (378)
T 1a59_A 4 TIHKGLAGVTADVTAISKVNSDTNSLLYRGYPVQELAAKCSFEQVAYLLWNSELPNDSELKAFVNFERSHRKLDENVKGA 83 (378)
T ss_dssp CCCGGGTTCCCCCCSSEEEETTTTEEEETTEEHHHHHHHCCHHHHHHHHHHSSCCCHHHHHHHHHHHHTSCSCCHHHHHH
T ss_pred CCCCCCCCCEEEEEEEEEEECCCCEEEECCCCHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHHHHHH
T ss_conf 77998899846347643785899879986902999972499999999997798959999999999999822698679999
Q ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 98512476525789999999875206855767878898889999999999999999972798534888642468877876
Q gi|254780355|r 121 FMGFPSSAHPMAMLVSAVGALSSFYYSPSGVQDLEQCVNVSLRMIAKISTIAAMIYKYSIGQPFVYPRSDLDYASNFLHM 200 (429)
Q Consensus 121 i~~~p~~ahPM~~L~~~vsaL~a~~~~~~~~~d~~~~~~~a~rLiA~~p~i~A~~yr~~~G~~~i~Pd~~lsyaeNfL~M 200 (429)
++.+|+++|||+++++++++++++++...+ .+++...+.+++|+|++|.+++++||++.|.+.+.|+++++|++||++|
T Consensus 84 ~~~~p~~~~pm~~l~~~~s~l~~~~~~~~~-~~~~~~~~~~~~lia~~~~i~a~~~~~~~g~~~~~p~~~~~~~~~~~~~ 162 (378)
T 1a59_A 84 IDLLSTACHPMDVARTAVSVLGANHARAQD-SSPEANLEKAMSLLATFPSVVAYDQRRRRGEELIEPREDLDYSANFLWM 162 (378)
T ss_dssp HTTSCTTSCHHHHHHHHHHHHHHTCTTTTC-CSHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCTTSCHHHHHHHH
T ss_pred HHHCCCCCCCHHHHHHHHHHHCCCCCCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHH
T ss_conf 985164569278998864322024553334-5478889999999997467899999851589888899860099999986
Q ss_pred HCCCCCCCCCCCHHHHHHHHHHHHEECCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCC
Q ss_conf 42898410147969999987563501367876301555544205654246776755421002220352899999862155
Q gi|254780355|r 201 CFSVPCAEYQVNPLLARAMNRIFILHADHEQNASTSTVRLAGSSGADPFACIAAGVACLGGRAHGGANEEALNMLMEIGS 280 (429)
Q Consensus 201 l~~~~~~~~~~~~~~~~ald~~LILhADHe~NaSTft~R~vaSt~adlysai~agi~aL~GPlHGGAne~v~~ml~~I~~ 280 (429)
+.+. .+++..+++||++||||||||+|+||||+|+++||++|+|+|++||+++|+||+||||+++|++|+++|+.
T Consensus 163 ~~~~-----~~~~~~~~~l~~~Lvl~aDHg~n~St~aaR~~aSt~~d~~~a~~aai~al~Gp~hgga~~~~~~~l~~i~~ 237 (378)
T 1a59_A 163 TFGE-----EAAPEVVEAFNVSMILYAEHSFNASTFTARVITSTLADLHSAVTGAIGALKGPLHGGANEAVMHTFEEIGI 237 (378)
T ss_dssp HHSS-----CCCHHHHHHHHHHHHHHSCCSSCHHHHHHHHHHTTTCCHHHHHHHHHHHHHSTTTTTHHHHHHHHHHHSCC
T ss_pred HCCC-----CCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHC
T ss_conf 3357-----99989999999999997037775038999999805887477888788742787544456899999999852
Q ss_pred CCH---------HHHHHHHHHHCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 351---------27999999821478614302774355554034689999999888608776517999999999996115
Q gi|254780355|r 281 LER---------IPHYIMRAKDKNDPFRIMGFGHRVYRNHDPRCRIMRETMYEVLEVTGRFNDPIAQVAIELERIALEDE 351 (429)
Q Consensus 281 ~~~---------v~~~i~~~~~~~~~~ri~GfGHrvyk~~DPRa~~l~~~~~~l~~~~~~~~~~~~~~a~~le~~a~~d~ 351 (429)
..+ +..||.+.+++++ |||||||||||..|||+++|+++++++.+... .+++++++.++|+++.+
T Consensus 238 ~~~~~~~~~~~~~~~~v~~~l~~~~--~i~GFGH~vy~~~DPRa~~l~~~~~~l~~~~~--~~~~~~~~~~le~~~~~-- 311 (378)
T 1a59_A 238 RKDESLDEAATRSKAWMVDALAQKK--KVMGFGHRVYKNGDSRVPTMKSALDAMIKHYD--RPEMLGLYNGLEAAMEE-- 311 (378)
T ss_dssp CSSCCHHHHHHHHHHHHHHHHHTTC--CCTTBCCSSCSSCCTTHHHHHHHHHHHHHHTT--CTHHHHHHHHHHHHHHH--
T ss_pred CCCCCCHHHHHHHHHHHHHHHHCCC--CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHH--
T ss_conf 2666512788888999999985578--65467886578899478999999999987531--07999999999999997--
Q ss_pred HCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 3145798778447889999984999668589999999989999999997078983004562105887687068
Q gi|254780355|r 352 YFIERKLYPNVDFYSGITLRALGFPTNLFTVLFAVARTAGWVSQWTEMIVDPSRRIGRPRQLYTGALKRDYVP 424 (429)
Q Consensus 352 ~~~~r~l~pNvDfysg~i~~~lGip~~~ft~iFa~~R~~Gw~AH~~Eq~~~~~~ri~RP~~~Y~G~~~r~y~p 424 (429)
.|+++||||||+|++|+.||||+++||++|++||++||+|||+||+++ ++|+||+++||||.+|+ +|
T Consensus 312 ---~k~l~pNvD~~~~~l~~~lG~p~~~~~~lf~~~R~~Gw~AH~~Eq~~~--~~l~RP~~~Y~G~~~r~-~p 378 (378)
T 1a59_A 312 ---AKQIKPNLDYPAGPTYNLMGFDTEMFTPLFIAARITGWTAHIMEQVAD--NALIRPLSEYNGPEQRQ-VP 378 (378)
T ss_dssp ---HHCCCBCTHHHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHHHHHHHHT--CCCCCCCCCCCSCCCCC-CC
T ss_pred ---CCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCCCCCCEECCCCCCC-CC
T ss_conf ---379997808799999999595966667999999999999999999747--99747365421899998-98
No 15
>2p2w_A Citrate synthase; transferase, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: FLC; 1.90A {Thermotoga maritima}
Probab=100.00 E-value=0 Score=776.61 Aligned_cols=363 Identities=33% Similarity=0.606 Sum_probs=340.9
Q ss_pred ECCCCCCEEEEEEEEEEEECCCCEEEECCEEHHHHHHHCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHH
Q ss_conf 88887862387875654334477789899319999750898999999981879998999999998864068998999999
Q gi|254780355|r 42 YDPAFSSTASCKSKITFIDGNNGILLYRGYPIEQLSEKSDFLEVCYLLLHGELANVSQQKDFNDKISRHALLNENMSRFF 121 (429)
Q Consensus 42 ~dpG~~~ta~ceS~IT~IDG~~G~L~YRGY~IedLa~~~sFeEVayLLl~GeLPt~~el~~F~~~l~~~~~lpe~v~~~i 121 (429)
.++||.++.+|+|+||+|||++|+|+||||+|+||+++++||||+||||+|+|||++|+++|+.+|.+++.+|+++.+++
T Consensus 2 ~~~GL~gv~v~~T~Is~id~~~G~L~YRG~~i~dLa~~~sfEeVa~LL~~G~LP~~~el~~f~~~l~~~~~~p~~~~~~~ 81 (367)
T 2p2w_A 2 IQKGLEGVKICESSICYLDGINGRLYYRGIPVEELAEKSTFEETAYFLWYGKLPTKSELEEFKRKMADYRELPAEALGIL 81 (367)
T ss_dssp CCTTCTTCCCCCCSSEEEETTTTEEEETTEEHHHHHHHCCHHHHHHHHHHSSCCCHHHHHHHHHHHHHTCCCCHHHHHHH
T ss_pred CCCCCCCCEEEEEECCEEECCCCEEEECCEEHHHHHCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf 89778998373776722657899899989459998605999999999978979599999999999998545849999999
Q ss_pred HHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 85124765257899999998752068557678788988899999999999999999727985348886424688778764
Q gi|254780355|r 122 MGFPSSAHPMAMLVSAVGALSSFYYSPSGVQDLEQCVNVSLRMIAKISTIAAMIYKYSIGQPFVYPRSDLDYASNFLHMC 201 (429)
Q Consensus 122 ~~~p~~ahPM~~L~~~vsaL~a~~~~~~~~~d~~~~~~~a~rLiA~~p~i~A~~yr~~~G~~~i~Pd~~lsyaeNfL~Ml 201 (429)
..+|+++|||+++++++++++++++. ++...+.+.+++|++|++++++||++.|.+++.|+++++|++||++|+
T Consensus 82 ~~~~~~~~pm~~l~~~~~~l~~~~~~------~~~~~~~~~~l~a~~~~i~~~~~~~~~g~~~~~p~~~~~~~~n~l~~~ 155 (367)
T 2p2w_A 82 YHLPKNLHYIDVLKIFLSIHGSMDGN------DEDLREKAIRVASVFPTILAYYYRYSKGKELIRPRKDLSHVENFYYMM 155 (367)
T ss_dssp TTSCSCCCHHHHHHHHHSCC-------------CHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCTTSCHHHHHHHHH
T ss_pred HHCCCCCCCCHHHHHHHHHHHHCCCC------CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 85742124202566654555402542------014677888787199999999999867995227975201888888761
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHEECCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCC
Q ss_conf 28984101479699999875635013678763015555442056542467767554210022203528999998621553
Q gi|254780355|r 202 FSVPCAEYQVNPLLARAMNRIFILHADHEQNASTSTVRLAGSSGADPFACIAAGVACLGGRAHGGANEEALNMLMEIGSL 281 (429)
Q Consensus 202 ~~~~~~~~~~~~~~~~ald~~LILhADHe~NaSTft~R~vaSt~adlysai~agi~aL~GPlHGGAne~v~~ml~~I~~~ 281 (429)
++. ++..+++||++||||||||+|+||||+|+++||++|+|+|++||+++|+||+||||+++|++|++++++.
T Consensus 156 ~~~-------~~~~~~~l~~~Lvl~adHg~n~STfa~R~~aSt~~d~~~~v~aal~~l~Gp~hgga~~~~~~~~~~~~~~ 228 (367)
T 2p2w_A 156 FGE-------RNEKIRLLESAFILLMEQDINASTFAALVIASTLSDLYSCIVGALGALKGPLHGGASEKVPPMLEEIGSE 228 (367)
T ss_dssp HSC-------CCTTHHHHHHHHHHHSCCSSCHHHHHHHHHHTTTCCHHHHHHHHHHHHHSTTTTTHHHHHHHHHHHHCSG
T ss_pred CCC-------CCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCH
T ss_conf 367-------5059999999999974476675203331000157528899998888636875656057899999984885
Q ss_pred CHHHHHHHHHHHCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 51279999998214786143027743555540346899999998886087765179999999999961153145798778
Q gi|254780355|r 282 ERIPHYIMRAKDKNDPFRIMGFGHRVYRNHDPRCRIMRETMYEVLEVTGRFNDPIAQVAIELERIALEDEYFIERKLYPN 361 (429)
Q Consensus 282 ~~v~~~i~~~~~~~~~~ri~GfGHrvyk~~DPRa~~l~~~~~~l~~~~~~~~~~~~~~a~~le~~a~~d~~~~~r~l~pN 361 (429)
+++++++++.+++++ +||||||||||..|||+.+|+++++++. .++++++++.++++++.++. .|+++||
T Consensus 229 ~~~~~~v~~~l~~~~--~i~GfGH~vy~~~DPRa~~l~~~~~~~~-----~~~~~~~~a~~l~~~~~~~~---~k~l~pN 298 (367)
T 2p2w_A 229 DRVEEFVQKCLKEKR--KIMGFGHRVYKTYDPRAVFLKRVLQEHF-----PDSKLFRIASKLEEYIVSNK---IKNIYPN 298 (367)
T ss_dssp GGHHHHHHHHHHHTC--CCTTBCCSSCSSCCHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHHHHHTT---GGGCCBC
T ss_pred HHHHHHHHHHHHCCC--CCCCCCCCCCCCCCCHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHCC---CCCCCCC
T ss_conf 558999999973366--5556676423567852999999998742-----20789999999999998476---7898817
Q ss_pred CCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHCC
Q ss_conf 44788999998499966858999999998999999999707898300456210588768706855429
Q gi|254780355|r 362 VDFYSGITLRALGFPTNLFTVLFAVARTAGWVSQWTEMIVDPSRRIGRPRQLYTGALKRDYVPLEERE 429 (429)
Q Consensus 362 vDfysg~i~~~lGip~~~ft~iFa~~R~~Gw~AH~~Eq~~~~~~ri~RP~~~Y~G~~~r~y~pi~~R~ 429 (429)
||||+|++|+.||||+++||++|++||++||+|||+||+++ +||+||+++|+||.+|+|+||++|+
T Consensus 299 vd~~~~~l~~~lG~p~~~~~~lf~iaR~~Gw~AH~~Eq~~~--~~l~RP~~~Y~G~~~~~~~p~~~R~ 364 (367)
T 2p2w_A 299 VDLYSSVLFEELGFPRNMFTALFATARVVGWTAHVIEYVSD--NKLIRPTSEYVGPMDVEYIPIERRD 364 (367)
T ss_dssp HHHHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHHHHHHHTT--CCCCCCCCCCCSCCSCCCCCGGGSC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCCCCCCEECCCCCCCCCCHHHCC
T ss_conf 69999999998097955553999999999999999999737--9976866620699999985878757
No 16
>1hjr_A Holliday junction resolvase (RUVC); site-specific recombinase; 2.50A {Escherichia coli} SCOP: c.55.3.6
Probab=49.18 E-value=11 Score=16.17 Aligned_cols=29 Identities=28% Similarity=0.241 Sum_probs=18.7
Q ss_pred EEEECCCCCCEEEEEEEEEEEECCCCEEEECCEE
Q ss_conf 1898888786238787565433447778989931
Q gi|254780355|r 39 IFTYDPAFSSTASCKSKITFIDGNNGILLYRGYP 72 (429)
Q Consensus 39 ~~~~dpG~~~ta~ceS~IT~IDG~~G~L~YRGY~ 72 (429)
++-.|||+.+|+-+ -||.+.+.+++-.|-
T Consensus 3 ILGiDPgl~~tG~a-----vid~~~~~~~~i~~g 31 (158)
T 1hjr_A 3 ILGIDPGSRVTGYG-----VIRQVGRQLSYLGSG 31 (158)
T ss_dssp EEEEECCSSEEEEE-----EEEEETTEEEEEEEE
T ss_pred EEEECCCCCCEEEE-----EEEEECCEEEEEEEE
T ss_conf 99984355856899-----999539878999866
No 17
>2zkq_s 40S ribosomal protein S15E; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=48.13 E-value=3.1 Score=20.06 Aligned_cols=24 Identities=25% Similarity=0.487 Sum_probs=18.9
Q ss_pred EEEECCEEHHHHHHHCCHHHHHHHH
Q ss_conf 7898993199997508989999999
Q gi|254780355|r 65 ILLYRGYPIEQLSEKSDFLEVCYLL 89 (429)
Q Consensus 65 ~L~YRGY~IedLa~~~sFeEVayLL 89 (429)
...||||++|||-+ -+.+|++-||
T Consensus 14 kF~yRG~~leeL~~-m~~~e~~~l~ 37 (145)
T 2zkq_s 14 KFTYRGVDLDQLLD-MSYEQLMQLY 37 (145)
T ss_dssp -------------------------
T ss_pred CCCCCCCCHHHHHC-CCHHHHHHHH
T ss_conf 66627886999870-7999999997
No 18
>1ffv_A CUTS, iron-sulfur protein of carbon monoxide dehydrogenase; hydrolase; HET: ARO PCD FAD; 2.25A {Hydrogenophaga pseudoflava} SCOP: a.56.1.1 d.15.4.2 PDB: 1ffu_A*
Probab=39.13 E-value=16 Score=15.08 Aligned_cols=22 Identities=9% Similarity=0.240 Sum_probs=18.5
Q ss_pred CCCCEEEEEECCEEEEEEEECC
Q ss_conf 9987699998998999752307
Q gi|254780355|r 1 MTDKFAKLHLGHEEIDLPIKEG 22 (429)
Q Consensus 1 M~~~~~~l~~~~~~~~lpi~~~ 22 (429)
|+++..++++||+.+++.+-..
T Consensus 1 m~~~~i~~~lNG~~~~~~v~p~ 22 (163)
T 1ffv_A 1 MAKKIITVNVNGKAQEKAVEPR 22 (163)
T ss_dssp --CEEEEEEETTEEEEEEECTT
T ss_pred CCCCEEEEEECCEEEEEECCCC
T ss_conf 9874699999999989637999
No 19
>3i9v_3 NADH-quinone oxidoreductase subunit 3; electron transport, respiratory chain, 4Fe- 4S, cell membrane, flavoprotein, FMN, iron; HET: FMN; 3.10A {Thermus thermophilus HB8} PDB: 2fug_3* 3iam_3* 3ias_3* 3m9s_3*
Probab=38.82 E-value=8.7 Score=16.93 Aligned_cols=13 Identities=23% Similarity=0.128 Sum_probs=6.7
Q ss_pred HHHHCCCCHHHHH
Q ss_conf 0222035289999
Q gi|254780355|r 261 GRAHGGANEEALN 273 (429)
Q Consensus 261 GPlHGGAne~v~~ 273 (429)
+++.+++|..-..
T Consensus 533 ~~l~~~~N~~G~~ 545 (783)
T 3i9v_3 533 LAMTPAANARGLE 545 (783)
T ss_dssp EECCSSTTHHHHH
T ss_pred CCCCCCHHHCCHH
T ss_conf 1345310114699
No 20
>3c8y_A Iron hydrogenase 1; dithiomethylether, H-cluster, 4Fe-4S, iron-sulfur, metal-binding, oxidoreductase; HET: HCN; 1.39A {Clostridium pasteurianum} SCOP: c.96.1.1 d.15.4.2 d.58.1.5 PDB: 1c4c_A* 1c4a_A* 1feh_A*
Probab=30.25 E-value=13 Score=15.72 Aligned_cols=50 Identities=8% Similarity=0.215 Sum_probs=32.4
Q ss_pred EEEEECCEEEEEEEECCCCCCCCEEECCCCCCC----EEEECCCCCC-EEEEEEEEEEEECC
Q ss_conf 999989989997523077787510100115586----1898888786-23878756543344
Q gi|254780355|r 6 AKLHLGHEEIDLPIKEGSLGSSVLDISFLHKNG----IFTYDPAFSS-TASCKSKITFIDGN 62 (429)
Q Consensus 6 ~~l~~~~~~~~lpi~~~~~~~~~~d~~~l~~~G----~~~~dpG~~~-ta~ceS~IT~IDG~ 62 (429)
.||+|||++++.| .|...++.-+ +.| .+.|+|++.. .++|.-=+--|+|.
T Consensus 2 ~~i~IdG~~v~~~-----~g~til~aa~--~~gi~IP~lCy~~~l~~~~g~CR~C~Vev~G~ 56 (574)
T 3c8y_A 2 KTIIINGVQFNTD-----EDTTILKFAR--DNNIDISALCFLNNCNNDINKCEICTVEVEGT 56 (574)
T ss_dssp EEEEETTEEEEEC-----CCCBHHHHHH--HTTCCCCCSSCBTTBCCSSSCCCTTEEEETTT
T ss_pred CEEEECCEEEEEC-----CCCHHHHHHH--HCCCCCCCCCCCCCCCCCCCCCCEEEEEECCC
T ss_conf 6899999999969-----9997999999--75998460368999879999626279998990
No 21
>1vk3_A Phosphoribosylformylglycinamidine synthase II; TM1246, structural genomics, JCSG, PSI, protein structure initiative; 2.15A {Thermotoga maritima} SCOP: d.79.4.1 d.79.4.1 d.139.1.1 d.139.1.1 PDB: 3d54_A* 2hs3_A* 2hs0_A* 2hs4_A* 2hru_A* 2hry_A*
Probab=28.34 E-value=24 Score=13.91 Aligned_cols=47 Identities=15% Similarity=0.294 Sum_probs=20.0
Q ss_pred HCCHHHHHHHHHC----CCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHCC
Q ss_conf 0898999999981----87999899999999886406899899999985124
Q gi|254780355|r 79 KSDFLEVCYLLLH----GELANVSQQKDFNDKISRHALLNENMSRFFMGFPS 126 (429)
Q Consensus 79 ~~sFeEVayLLl~----GeLPt~~el~~F~~~l~~~~~lpe~v~~~i~~~p~ 126 (429)
++...|+-||-.. |+=||..||..|.+..++|.. +...+.+++.+|.
T Consensus 9 ~~~~~e~~yl~~~~~~lgR~Pt~~El~~~~~~wSEHc~-hk~~~~~lk~~~~ 59 (615)
T 1vk3_A 9 HHHHMKLRYLNILKEKLGREPTFVELQAFSVMWSEHCG-YSHTKKYIRRLPK 59 (615)
T ss_dssp -----CHHHHHHHHHHHTSCCCHHHHHHHHHHTSHHHH-CTTTHHHHHTSCB
T ss_pred CCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCC-CCCCHHHHHCCCC
T ss_conf 23300099999999983889989999999787453127-7883899950775
No 22
>2nx2_A Hypothetical protein YPSA; structural genomics, unknown function, PSI, protein structure initiative; 2.00A {Bacillus subtilis} SCOP: c.129.1.2
Probab=26.76 E-value=25 Score=13.72 Aligned_cols=14 Identities=21% Similarity=0.337 Sum_probs=5.0
Q ss_pred HHHHHHHHEECCCC
Q ss_conf 99875635013678
Q gi|254780355|r 217 RAMNRIFILHADHE 230 (429)
Q Consensus 217 ~ald~~LILhADHe 230 (429)
++|...|+-+.+-|
T Consensus 30 ~~L~~~l~~~~~~G 43 (181)
T 2nx2_A 30 KAIKNRLIAFLDEG 43 (181)
T ss_dssp HHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHCC
T ss_conf 99999999999779
No 23
>2ohc_A TRNA-splicing endonuclease; intron, hydrolase; 2.50A {Thermoplasma acidophilum dsm 1728} PDB: 2ohe_A
Probab=22.16 E-value=31 Score=13.14 Aligned_cols=15 Identities=33% Similarity=0.629 Sum_probs=13.0
Q ss_pred CHHHHHHHHHCCCCC
Q ss_conf 989999999818799
Q gi|254780355|r 81 DFLEVCYLLLHGELA 95 (429)
Q Consensus 81 sFeEVayLLl~GeLP 95 (429)
+-+|++||++.|.++
T Consensus 39 ~p~Ea~yL~~~g~i~ 53 (289)
T 2ohc_A 39 DPYECLYLYFKGRIS 53 (289)
T ss_dssp CHHHHHHHHHTTCEE
T ss_pred EHHHHHHHHHCCCEE
T ss_conf 299999998739886
No 24
>2l0c_A Putative membrane protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Salmonella enterica subsp}
Probab=21.33 E-value=23 Score=14.03 Aligned_cols=13 Identities=38% Similarity=0.746 Sum_probs=10.6
Q ss_pred EECCCCEEEECCE
Q ss_conf 3344777898993
Q gi|254780355|r 59 IDGNNGILLYRGY 71 (429)
Q Consensus 59 IDG~~G~L~YRGY 71 (429)
.-|++|+|.|.|-
T Consensus 64 ~~Gd~G~L~~QGt 76 (97)
T 2l0c_A 64 TVGDQGTLSYKGT 76 (97)
T ss_dssp CTTCCEEEEEETT
T ss_pred CCCCEEEEEECEE
T ss_conf 8997899998501
No 25
>2nx9_A Oxaloacetate decarboxylase 2, subunit alpha; carboxyltransferase structure, biotin enzymes, Zn2+ binding site, TIM-barrel fold, lyase; 1.70A {Vibrio cholerae}
Probab=20.67 E-value=33 Score=12.94 Aligned_cols=117 Identities=21% Similarity=0.262 Sum_probs=56.7
Q ss_pred HEECCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCC--C------CCHHHHHHHHHHHCC
Q ss_conf 50136787630155554420565424677675542100222035289999986215--5------351279999998214
Q gi|254780355|r 224 ILHADHEQNASTSTVRLAGSSGADPFACIAAGVACLGGRAHGGANEEALNMLMEIG--S------LERIPHYIMRAKDKN 295 (429)
Q Consensus 224 ILhADHe~NaSTft~R~vaSt~adlysai~agi~aL~GPlHGGAne~v~~ml~~I~--~------~~~v~~~i~~~~~~~ 295 (429)
-+|.-......+..+..+.-+|+|.+-+-.+|+|--.| + -+.|.++.+|+..| + -..+.+|+.+...+-
T Consensus 205 ~~H~Hnt~Gla~AN~laAi~aGa~~iD~si~GlGg~~g--n-p~tE~lv~~L~~~G~dtgiDl~~l~~is~~~~~~~~~y 281 (464)
T 2nx9_A 205 HLHCHSTAGLADMTLLKAIEAGVDRVDTAISSMSGTYG--H-PATESLVATLQGTGYDTGLDIAKLEQIAAYFRDVRKKY 281 (464)
T ss_dssp EEEECCTTSCHHHHHHHHHHTTCSEEEEBCGGGCSTTS--C-CBHHHHHHHHTTSTTCCCCCHHHHHHHHHHHHHHHHHT
T ss_pred EEEECCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCC--C-CCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 88868998629999999998499999954667899858--8-67999999998259988989999999999999999985
Q ss_pred CC--CEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf 78--6143027743555540346899999998886087765179999999999
Q gi|254780355|r 296 DP--FRIMGFGHRVYRNHDPRCRIMRETMYEVLEVTGRFNDPIAQVAIELERI 346 (429)
Q Consensus 296 ~~--~ri~GfGHrvyk~~DPRa~~l~~~~~~l~~~~~~~~~~~~~~a~~le~~ 346 (429)
.. ....|+.-.||...=|=- .+-.+..+ +.+.|. .|.+-++..++.++
T Consensus 282 ~~~~~~~~~~~~~~~~~~~pGG-~~snl~~q-~~~~~~-~~~~~ev~~~~~~v 331 (464)
T 2nx9_A 282 HAFEGMMKGSDARILVAQVPGG-MLTNMESQ-LKQQNA-LDKLDLVLEEIPRV 331 (464)
T ss_dssp GGGCCSCCSCCTHHHHHCCCHH-HHHHHHHH-HHTTSC-GGGHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCEECCCCHH-HHHHHHHH-HHHCCC-HHHHHHHHHHHHHH
T ss_conf 2355445688854200568721-66669999-870540-42399999999999
No 26
>1v97_A XD, xanthine dehydrogenase; molybdopterin, FYX-051, reaction intermediate, oxidoreductase; HET: MTE FAD FYX; 1.94A {Bos taurus} SCOP: a.56.1.1 d.15.4.2 d.41.1.1 d.87.2.1 d.133.1.1 d.145.1.3 PDB: 1fo4_A* 1vdv_A* 3bdj_A* 1n5x_A* 2ckj_A* 2e1q_A* 2e3t_A* 1wyg_A* 3b9j_C* 1fiq_C* 3eub_C* 3etr_C* 1fiq_B* 3b9j_B* 3etr_B* 3eub_B* 3b9j_A* 1fiq_A* 3eub_A* 3etr_A*
Probab=20.08 E-value=34 Score=12.85 Aligned_cols=122 Identities=13% Similarity=0.169 Sum_probs=67.4
Q ss_pred CCCCEEEEEECCEEEEEEEECCCCCCCCEEE-C-CCCCCC--EEEECCCCCCEEEEEEEEEEEECCCCEEEEC-------
Q ss_conf 9987699998998999752307778751010-0-115586--1898888786238787565433447778989-------
Q gi|254780355|r 1 MTDKFAKLHLGHEEIDLPIKEGSLGSSVLDI-S-FLHKNG--IFTYDPAFSSTASCKSKITFIDGNNGILLYR------- 69 (429)
Q Consensus 1 M~~~~~~l~~~~~~~~lpi~~~~~~~~~~d~-~-~l~~~G--~~~~dpG~~~ta~ceS~IT~IDG~~G~L~YR------- 69 (429)
|+-...+..+||+.+++.-.+... ..+|+ | .++-|| .-. +=+.-++|.--++..|...|.++||
T Consensus 1 ~~~~~l~F~lNg~~~~~~~~~p~~--tLl~~LR~~~~ltGtK~gC---~eG~CGaCtV~v~~~~~~~~~~~~~~vNsCl~ 75 (1332)
T 1v97_A 1 MTADELVFFVNGKKVVEKNADPET--TLLAYLRRKLGLRGTKLGC---GEGGCGACTVMLSKYDRLQDKIIHFSANACLA 75 (1332)
T ss_dssp --CCCEEEEETTEEEEETTCCTTC--BHHHHHHHTSCCTTSCCSC---SSSSSCTTEEEEEEEETTTTEEEEEEEETTTC
T ss_pred CCCCEEEEEECCEEEEECCCCCCC--CHHHHHHHCCCCCCCCCCC---CCCCCCCEEEEEEEEECCCCCEEEEEEEHHHH
T ss_conf 987638999999999858999986--5999985189985123544---78898466999733707899378998666986
Q ss_pred --------------------C--EEHHH-HHHH----CCH-----HHHH-HHHHCCCCCCHHHHH-HHHHHHHHCCCCCH
Q ss_conf --------------------9--31999-9750----898-----9999-999818799989999-99998864068998
Q gi|254780355|r 70 --------------------G--YPIEQ-LSEK----SDF-----LEVC-YLLLHGELANVSQQK-DFNDKISRHALLNE 115 (429)
Q Consensus 70 --------------------G--Y~Ied-La~~----~sF-----eEVa-yLLl~GeLPt~~el~-~F~~~l~~~~~lpe 115 (429)
+ +||.+ |++. |.| .=-. .||-+..-||.+|.+ .|.-.|.+.+-- -
T Consensus 76 ~l~~~~g~~i~TvEglg~~~~~lHpvQ~~l~~~hgsQCGfCTPGfVMsmyal~~~~~~~t~~~i~~al~GNLCRCTGY-r 154 (1332)
T 1v97_A 76 PICTLHHVAVTTVEGIGSTKTRLHPVQERIAKSHGSQCGFCTPGIVMSMYTLLRNQPEPTVEEIEDAFQGNLCRCTGY-R 154 (1332)
T ss_dssp BGGGCTTCEEECGGGTCCSSSCCCHHHHHHHHTTCCSSCSSHHHHHHHHHHHHHHCSSCCHHHHHHTTTTCCCSSSCS-H
T ss_pred HHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCC-H
T ss_conf 998757988995488888999978999999863998388896389999999997699999999998738211014797-9
Q ss_pred HHHHHHHHHCCCC
Q ss_conf 9999998512476
Q gi|254780355|r 116 NMSRFFMGFPSSA 128 (429)
Q Consensus 116 ~v~~~i~~~p~~a 128 (429)
.+.+.++.|..++
T Consensus 155 pIldA~~~fa~~~ 167 (1332)
T 1v97_A 155 PILQGFRTFAKNG 167 (1332)
T ss_dssp HHHHHHGGGCC--
T ss_pred HHHHHHHHHHHCC
T ss_conf 9999999865315
No 27
>1t3u_A Conserved hypothetical protein; NYSGXRC, unknown ORF, COG3027, PSI, protein structure initiative; 2.50A {Pseudomonas aeruginosa PAO1} SCOP: d.244.1.1 PDB: 1w2e_A
Probab=20.04 E-value=34 Score=12.85 Aligned_cols=23 Identities=13% Similarity=0.070 Sum_probs=11.6
Q ss_pred CCCCCHHHHHHHHHCCCCHHHHH
Q ss_conf 77844788999998499966858
Q gi|254780355|r 359 YPNVDFYSGITLRALGFPTNLFT 381 (429)
Q Consensus 359 ~pNvDfysg~i~~~lGip~~~ft 381 (429)
+++++.---+++.+|.|-.++|.
T Consensus 46 ~~~~~~~~~~vmaaLnia~e~~~ 68 (104)
T 1t3u_A 46 GKVIGADRVAVMAALNITHDLLH 68 (104)
T ss_dssp TCSCSHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 68999999999999999999999
Done!