RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780355|ref|YP_003064768.1| type II citrate synthase
[Candidatus Liberibacter asiaticus str. psy62]
(429 letters)
>gnl|CDD|180164 PRK05614, gltA, type II citrate synthase; Reviewed.
Length = 419
Score = 750 bits (1938), Expect = 0.0
Identities = 274/420 (65%), Positives = 332/420 (79%), Gaps = 4/420 (0%)
Query: 1 MTDKFAKLHL--GHEEIDLPIKEGSLGSSVLDIS-FLHKNGIFTYDPAFSSTASCKSKIT 57
M DK A L L G ++LPI +G+LG V+DI G FTYDP F+STASC+SKIT
Sbjct: 1 MADKKATLTLNGGEASVELPILKGTLGPDVIDIRKLYGSTGYFTYDPGFTSTASCESKIT 60
Query: 58 FIDGNNGILLYRGYPIEQLSEKSDFLEVCYLLLHGELANVSQQKDFNDKISRHALLNENM 117
+IDG+ GILLYRGYPIEQL+EKSDFLEVCYLLL+GEL Q+ +F+ ++RH +++E +
Sbjct: 61 YIDGDKGILLYRGYPIEQLAEKSDFLEVCYLLLYGELPTAEQKAEFDTTVTRHTMVHEQL 120
Query: 118 SRFFMGFPSSAHPMAMLVSAVGALSSFYYSPSGVQDLEQCVNVSLRMIAKISTIAAMIYK 177
RFF GF AHPMA+L VGALS+FY+ + D E ++R+IAK+ T+AAM YK
Sbjct: 121 KRFFRGFRRDAHPMAVLCGVVGALSAFYHDSLDINDPEHREIAAIRLIAKMPTLAAMAYK 180
Query: 178 YSIGQPFVYPRSDLDYASNFLHMCFSVPCAEYQVNPLLARAMNRIFILHADHEQNASTST 237
YSIGQPFVYPR+DL YA NFL M F+ PC EY+VNP+L RA++RIFILHADHEQNASTST
Sbjct: 181 YSIGQPFVYPRNDLSYAENFLRMMFATPCEEYEVNPVLVRALDRIFILHADHEQNASTST 240
Query: 238 VRLAGSSGADPFACIAAGVACLGGRAHGGANEEALNMLMEIGSLERIPHYIMRAKDKNDP 297
VRLAGSSGA+PFACIAAG+A L G AHGGANE L ML EIGS++ IP +I RAKDKND
Sbjct: 241 VRLAGSSGANPFACIAAGIAALWGPAHGGANEAVLKMLEEIGSVDNIPEFIARAKDKNDG 300
Query: 298 FRIMGFGHRVYRNHDPRCRIMRETMYEVLEVTGRFNDPIAQVAIELERIALEDEYFIERK 357
FR+MGFGHRVY+N+DPR +IMRET +EVL+ G NDP+ +VA+ELE IAL DEYFIERK
Sbjct: 301 FRLMGFGHRVYKNYDPRAKIMRETCHEVLKELG-LNDPLLEVAMELEEIALNDEYFIERK 359
Query: 358 LYPNVDFYSGITLRALGFPTNLFTVLFAVARTAGWVSQWTEMIVDPSRRIGRPRQLYTGA 417
LYPNVDFYSGI L+ALG PT++FTV+FA+ART GW++ W EM DP ++IGRPRQLYTG
Sbjct: 360 LYPNVDFYSGIILKALGIPTSMFTVIFALARTVGWIAHWNEMHSDPEQKIGRPRQLYTGY 419
>gnl|CDD|162539 TIGR01798, cit_synth_I, citrate synthase I (hexameric type). This
model describes one of several distinct but closely
homologous classes of citrate synthase, the protein that
brings carbon (from acetyl-CoA) into the TCA cycle. This
form, class I, is known to be hexameric and
allosterically inhibited by NADH in Escherichia coli,
Acinetobacter anitratum, Azotobacter vinelandii,
Pseudomonas aeruginosa, etc. In most species with a
class I citrate synthase, a dimeric class II isozyme is
found. The class II enzyme may act primarily on
propionyl-CoA to make 2-methylcitrate or be
bifunctional, may be found among propionate utilization
enzymes, and may be constitutive or induced by
propionate. Some members of this model group as class I
enzymes, and may be hexameric, but have shown regulatory
properties more like class II enzymes.
Length = 412
Score = 678 bits (1752), Expect = 0.0
Identities = 269/410 (65%), Positives = 338/410 (82%), Gaps = 1/410 (0%)
Query: 14 EIDLPIKEGSLGSSVLDISFLHKN-GIFTYDPAFSSTASCKSKITFIDGNNGILLYRGYP 72
++LPI G+LG V+DI L+K G+FT+DP F+STASC+SKITFIDG+ GILLYRGYP
Sbjct: 3 SVELPIYSGTLGPDVIDIRKLYKQTGLFTFDPGFTSTASCESKITFIDGDKGILLYRGYP 62
Query: 73 IEQLSEKSDFLEVCYLLLHGELANVSQQKDFNDKISRHALLNENMSRFFMGFPSSAHPMA 132
I+QL+ KSD+LEVCYLLL+GEL Q+ +F+D ++RH +++E ++RFF GF AHPMA
Sbjct: 63 IDQLATKSDYLEVCYLLLNGELPTAEQKDEFDDTVTRHTMVHEQVTRFFNGFRRDAHPMA 122
Query: 133 MLVSAVGALSSFYYSPSGVQDLEQCVNVSLRMIAKISTIAAMIYKYSIGQPFVYPRSDLD 192
++V VGALS+FY+ + D ++R+IAKI T+AAM YKYSIGQPFVYPR+DL
Sbjct: 123 VMVGVVGALSAFYHDSLDINDPRHREIAAIRLIAKIPTLAAMSYKYSIGQPFVYPRNDLS 182
Query: 193 YASNFLHMCFSVPCAEYQVNPLLARAMNRIFILHADHEQNASTSTVRLAGSSGADPFACI 252
YA NFLHM F+ PC +Y+VNP+LARAM+RIFILHADHEQNASTSTVRLAGSSGA+PFACI
Sbjct: 183 YAENFLHMMFATPCEDYKVNPVLARAMDRIFILHADHEQNASTSTVRLAGSSGANPFACI 242
Query: 253 AAGVACLGGRAHGGANEEALNMLMEIGSLERIPHYIMRAKDKNDPFRIMGFGHRVYRNHD 312
AAG+A L G AHGGANE AL ML EIGS++ IP +I + KDKNDPFR+MGFGHRVY+N+D
Sbjct: 243 AAGIAALWGPAHGGANEAALKMLEEIGSVKNIPEFIKKVKDKNDPFRLMGFGHRVYKNYD 302
Query: 313 PRCRIMRETMYEVLEVTGRFNDPIAQVAIELERIALEDEYFIERKLYPNVDFYSGITLRA 372
PR ++MRET +EVL+ G +DP+ ++A+ELE+IAL D YFIERKLYPNVDFYSGI L+A
Sbjct: 303 PRAKVMRETCHEVLKELGLHDDPLFKLAMELEKIALNDPYFIERKLYPNVDFYSGIILKA 362
Query: 373 LGFPTNLFTVLFAVARTAGWVSQWTEMIVDPSRRIGRPRQLYTGALKRDY 422
+G PT++FTV+FA+ART GW+S W+EMI DP ++IGRPRQLYTG +RDY
Sbjct: 363 MGIPTSMFTVIFALARTVGWISHWSEMISDPGQKIGRPRQLYTGEEQRDY 412
>gnl|CDD|178075 PLN02456, PLN02456, citrate synthase.
Length = 455
Score = 498 bits (1283), Expect = e-141
Identities = 193/405 (47%), Positives = 251/405 (61%), Gaps = 22/405 (5%)
Query: 37 NGIFTYDPAFSSTASCKSKITFIDGNNGILLYRGYPIEQLSEKSDFLEVCYLLLHGELAN 96
G+ T DP + +TA S+I+ IDG+ GIL +RGYPIE+L+EKS F EV YLLL+G L
Sbjct: 59 LGLKTVDPGYRNTAPVLSEISLIDGDEGILRFRGYPIEELAEKSPFEEVAYLLLYGNLPT 118
Query: 97 VSQQKDFNDKISRHALLNENMSRFFMGFPSSAHPMAMLVSAVGALSSFY----------- 145
Q D+ ++ +H+ + E++ P AHPM LVS V ALS+F
Sbjct: 119 KEQLADWEAELRQHSAVPEHVLDVIDALPHDAHPMTQLVSGVMALSTFSPDANAYLRGQH 178
Query: 146 -YSPSGVQDLEQCVNVSLRMIAKISTIAAMIYKYSIGQPFVYPRSDLDYASNFLHMCFSV 204
Y V+D + +R+I K+ T+AA IY+ G+ V P + LDYA NFL+M S+
Sbjct: 179 KYKSWEVRDED-----IVRLIGKLPTLAAAIYRRMYGRGPVIPDNSLDYAENFLYMLGSL 233
Query: 205 PCAEYQVNPLLARAMNRIFILHADHEQNASTSTVR-LAGSSGADPFACIAAGVACLGGRA 263
Y+ +P LAR ++ FI+HADHE ST+ R L GSSG DP+ +AAGV L G
Sbjct: 234 GDRSYKPDPRLARLLDLYFIIHADHEGGCSTAAARHLVGSSGVDPYTSVAAGVNALAGPL 293
Query: 264 HGGANEEALNMLMEIGSLERIPHYIMRAKDKNDPFRIMGFGHRVYRNHDPRCRIMRETMY 323
HGGANE L ML EIG++E IP Y+ K+ + GFGHRVY+N+DPR + +RE
Sbjct: 294 HGGANEAVLKMLKEIGTVENIPEYVEGVKNSKK--VLPGFGHRVYKNYDPRAKCIREFAL 351
Query: 324 EVLEVTGRFNDPIAQVAIELERIALEDEYFIERKLYPNVDFYSGITLRALGFPTNLFTVL 383
EV + G DP+ +VA LE +AL DEYF RKLYPNVDFYSG+ LRALGFP FTVL
Sbjct: 352 EVFKHVGD--DPLFKVASALEEVALLDEYFKVRKLYPNVDFYSGVLLRALGFPEEFFTVL 409
Query: 384 FAVARTAGWVSQWTEMIVDPSRRIGRPRQLYTGALKRDYVPLEER 428
FAV+R AG++SQW E + P RI RP+Q+YTG R Y P ER
Sbjct: 410 FAVSRAAGYLSQWDEALGLPDERIMRPKQVYTGEWLRHYCPKAER 454
>gnl|CDD|184469 PRK14036, PRK14036, citrate synthase; Provisional.
Length = 377
Score = 358 bits (922), Expect = 1e-99
Identities = 165/387 (42%), Positives = 227/387 (58%), Gaps = 14/387 (3%)
Query: 42 YDPAFSSTASCKSKITFIDGNNGILLYRGYPIEQLSEKSDFLEVCYLLLHGELANVSQQK 101
Y P + +S I+++DG GIL YRGYPIE+L+EKS FLE YLL+ GEL + +
Sbjct: 4 YRPGLEGVPATQSSISYVDGQKGILEYRGYPIEELAEKSSFLETAYLLIWGELPTAEELE 63
Query: 102 DFNDKISRHALLNENMSRFFMGFPSSAHPMAMLVSAVGALSSFYYSPSGVQDLEQCVNVS 161
+F ++ H + + FP + HPM L ++ AL FY S + D E +
Sbjct: 64 EFEQEVRMHRRVKYRIRDMMKCFPETGHPMDALQASAAALGLFY-SRRALDDPEYIRDAV 122
Query: 162 LRMIAKISTIAAMIYKYSIGQPFVYPRSDLDYASNFLHMCFSVPCAEYQVNPLLARAMNR 221
+R+IAKI T+ A G + PR DLDYA+NFL+M E + +PL AR +R
Sbjct: 123 VRLIAKIPTMVAAFQLIRKGNDPIQPRDDLDYAANFLYMLT-----EREPDPLAARIFDR 177
Query: 222 IFILHADHEQNASTSTVRLAGSSGADPFACIAAGVACLGGRAHGGANEEALNMLMEIGSL 281
ILHA+H NAST + R+ S+ DP+A IA+ V L G HGGANE+ L ML EIGS+
Sbjct: 178 CLILHAEHTINASTFSARVTASTLTDPYAVIASAVGTLAGPLHGGANEDVLAMLEEIGSV 237
Query: 282 ERIPHYIMRAKDKNDPFRIMGFGHRVYRNHDPRCRIMRETMYEVLEVTGRFNDPIAQVAI 341
E + Y+ +IMGFGHR Y+ DPR I+++ E+ G D ++A+
Sbjct: 238 ENVRPYLDERLANKQ--KIMGFGHREYKVKDPRATILQKLAEELFARFGH--DEYYEIAL 293
Query: 342 ELERIALEDEYFIERKLYPNVDFYSGITLRALGFPTNLFTVLFAVARTAGWVSQWTEMIV 401
ELER+A +E + +YPNVDFYSG+ R LG P +LFT +FA+AR AGW++ W E +
Sbjct: 294 ELERVA--EERLGPKGIYPNVDFYSGLVYRKLGIPRDLFTPIFAIARVAGWLAHWREQLG 351
Query: 402 DPSRRIGRPRQLYTGALKRDYVPLEER 428
RI RP Q+YTG+ R Y+PLEER
Sbjct: 352 A--NRIFRPTQIYTGSHNRRYIPLEER 376
>gnl|CDD|130859 TIGR01800, cit_synth_II, 2-methylcitrate synthase/citrate synthase
II. Members of this family are dimeric enzymes with
activity as 2-methylcitrate synthase, citrate synthase,
or both. Many Gram-negative species have a hexameric
citrate synthase, termed citrate synthase I (TIGR01798).
Members of this family (TIGR01800) appear as a second
citrate synthase isozyme but typically are associated
with propionate metabolism and synthesize
2-methylcitrate from propionyl-CoA; citrate synthase
activity may be incidental. A number of species,
including Thermoplasma acidophilum, Pyrococcus furiosus,
and the Antarctic bacterium DS2-3R have a bifunctional
member of this family as the only citrate synthase
isozyme.
Length = 368
Score = 330 bits (847), Expect = 6e-91
Identities = 140/378 (37%), Positives = 218/378 (57%), Gaps = 17/378 (4%)
Query: 51 SCKSKITFIDGNNGILLYRGYPIEQLSEKSDFLEVCYLLLHGELANVSQQKDFNDKISRH 110
+ ++ ++ IDG+ GIL YRGY IE L+E + F EV YLLLHG+L S+ + F ++++
Sbjct: 8 ADETALSTIDGSEGILTYRGYDIEDLAEHASFEEVAYLLLHGKLPTRSELRKFKTELAKL 67
Query: 111 ALLNENMSRFFMGFPSSAHPMAMLVSAVGALSSFYYSPSGVQDLEQCVNVSLRMIAKIST 170
L + + P+ +HPM L +AV L + G E+ ++++R+IAK+ T
Sbjct: 68 RGLPDEVIELIEALPAESHPMDALRTAVSYLGALDPEAFGH-TPEEARDIAIRLIAKLPT 126
Query: 171 IAAMIYKYSIGQPFVYPRSDLDYASNFLHMCFSVPCAEYQVNPLLARAMNRIFILHADHE 230
I A Y+ G V P+ D +A+NFL+M + + +AM+ IL+A+HE
Sbjct: 127 IVAYWYRIRNGLEIVAPKEDDSHAANFLYMLHG-----EEPSKEEEKAMDIALILYAEHE 181
Query: 231 QNASTSTVRLAGSSGADPFACIAAGVACLGGRAHGGANEEALNMLMEIGSLERIPHYIMR 290
NAST R+A S+ +D ++ I A + L G HGGANE + ML EIG ++ +I +
Sbjct: 182 FNASTFAARVAASTLSDMYSAITAAIGALKGPLHGGANEAVMAMLDEIGDPDKAEAWIRK 241
Query: 291 AKDKNDPFRIMGFGHRVYRNHDPRCRIMRETMYEVLEVTGRFNDPIAQVAIELERIALED 350
A + + RIMGFGHRVY+ +DPR +I++E ++ G ++A LE + +
Sbjct: 242 ALENKE--RIMGFGHRVYKTYDPRAKILKEYAKKLSAKEGDSK--WYEIAERLEDVMEK- 296
Query: 351 EYFIERKLYPNVDFYSGITLRALGFPTNLFTVLFAVARTAGWVSQWTEMIVDPSRRIGRP 410
E+ +YPNVDFYSG ++G PT+LFT +FA++R +GW + E + + R+ RP
Sbjct: 297 ----EKGIYPNVDFYSGSVYYSMGIPTDLFTPIFAMSRVSGWTAHIIEQVEN--NRLIRP 350
Query: 411 RQLYTGALKRDYVPLEER 428
R Y G +R YVP+EER
Sbjct: 351 RADYVGPEERKYVPIEER 368
>gnl|CDD|184470 PRK14037, PRK14037, citrate synthase; Provisional.
Length = 377
Score = 270 bits (691), Expect = 7e-73
Identities = 130/381 (34%), Positives = 204/381 (53%), Gaps = 25/381 (6%)
Query: 54 SKITFIDGNNGILLYRGYPIEQLSEKSDFLEVCYLLLHGELANVSQQKDFNDKISRHALL 113
+ +TFIDG GIL YRGY IE L + E YL+L+GEL + D +K++ +
Sbjct: 16 TNLTFIDGEKGILRYRGYNIEDLVNYGSYEETIYLMLYGELPTKKELNDLKEKLNEEYEV 75
Query: 114 NENMSRFFMGFPSSAHPMAMLVSAVGALSSFYYSPSGVQDLEQCVNVSLRMIAKISTIAA 173
+ + P + + ++ +A AL+S + ++ ++ ++ +IAK++TI A
Sbjct: 76 PQEVIDSIYLMPRDSDAIGLMEAAFAALASIDKNFKW-KENDK--EKAISIIAKMATIVA 132
Query: 174 MIYKYSIGQPFVYPRSDLDYASNFLHMCFSVPCAEYQVNPLLARAMNRIFILHADHEQNA 233
+Y+ G P +A +FL F+ ++ AM+ IL+ DHE A
Sbjct: 133 NVYRRKEGNKPRIPEPSDSFAESFLLASFAREPTAEEIK-----AMDAALILYTDHEVPA 187
Query: 234 STSTVRLAGSSGADPFACIAAGVACLGGRAHGGANEEALNMLMEIGSLERIPHYIMRAKD 293
ST+ +A S+ +D ++CI A +A L G HGGA EEA +EIG + + D
Sbjct: 188 STTAALVAASTLSDMYSCITAALAALKGPLHGGAAEEAFKQFVEIGDPNNVEMWF---ND 244
Query: 294 K--NDPFRIMGFGHRVYRNHDPRCRIMRETMYEVLEVTGRFNDP----IAQVAIELERIA 347
K N R+MGFGHRVY+ +DPR +I +E ++E + ++A +LE +
Sbjct: 245 KIINGKKRLMGFGHRVYKTYDPRAKIFKELAETLIE-----RNSEAKKYFEIAQKLEELG 299
Query: 348 LEDEYFIERKLYPNVDFYSGITLRALGFPTNLFTVLFAVARTAGWVSQWTEMIVDPSRRI 407
++ F + +YPN DFYSGI ALGFP +FT LFA++RT GW++ E + + R I
Sbjct: 300 IKQ--FGSKGIYPNTDFYSGIVFYALGFPVYMFTALFALSRTLGWLAHIIEYVEEQHRLI 357
Query: 408 GRPRQLYTGALKRDYVPLEER 428
RPR LY G R+YVP+++R
Sbjct: 358 -RPRALYVGPEHREYVPIDKR 377
>gnl|CDD|184468 PRK14035, PRK14035, citrate synthase; Provisional.
Length = 371
Score = 259 bits (664), Expect = 9e-70
Identities = 132/379 (34%), Positives = 207/379 (54%), Gaps = 20/379 (5%)
Query: 51 SCKSKITFIDGNNGILLYRGYPIEQLSEKSDFLEVCYLLLHGELANVSQQKDFNDKISRH 110
+ ++KI+ I + L Y GY I+ L+E + F EV +LL + L + K+ ++
Sbjct: 12 AAETKISSIIDSQ--LTYAGYDIDDLAENASFEEVIFLLWNYRLPTEEELAHLKGKLRKY 69
Query: 111 ALLNENMSRFFMGFPSS-AHPMAMLVSAVGALSSFYYSPSGVQDLEQCVNVSLRMIAKIS 169
LN+ + + F + + HPM L ++V L+ F + E ++R+ AK++
Sbjct: 70 MTLNDRVYQHFEEYSTDHVHPMTALRTSVSYLAHFDPDAEE-ESDEARYERAIRIQAKVA 128
Query: 170 TIAAMIYKYSIGQPFVYPRSDLDYASNFLHMCFSVPCAEYQVNPLLARAMNRIFILHADH 229
++ + G+ + PR DL YA+NFL+M + +V A N+ +LHADH
Sbjct: 129 SLVTAFARVRQGKEPLKPRPDLSYAANFLYMLRGELPTDIEV-----EAFNKALVLHADH 183
Query: 230 EQNASTSTVRLAGSSGADPFACIAAGVACLGGRAHGGANEEALNMLMEIGSLERIPHYIM 289
E NAST T R A SS +D ++ + A V L G HGGANE ++ML EI S+ + Y+
Sbjct: 184 ELNASTFTARCAVSSLSDMYSGVVAAVGSLKGPLHGGANERVMDMLSEIRSIGDVDAYLD 243
Query: 290 RAKDKNDPFRIMGFGHRVYRNHDPRCRIMRETMYEVLEVTGRFNDPIAQVAIELERIALE 349
+ +IMGFGHRVY++ DPR + +RE ++ + TGR + + ++++++E+ E
Sbjct: 244 EKFANKE--KIMGFGHRVYKDGDPRAKYLREMSRKITKGTGR--EELFEMSVKIEKRMKE 299
Query: 350 DEYFIERKLYPNVDFYSGITLRALGFPTNLFTVLFAVARTAGWVSQWTEMIVDPSRRIGR 409
E+ L PNVDFYS +G P +LFT +FAV+R AGW++ E D RI R
Sbjct: 300 -----EKGLIPNVDFYSATVYHVMGIPHDLFTPIFAVSRVAGWIAHILEQYKD--NRIMR 352
Query: 410 PRQLYTGALKRDYVPLEER 428
PR Y G R Y+P+EER
Sbjct: 353 PRAKYIGETNRKYIPIEER 371
>gnl|CDD|184467 PRK14034, PRK14034, citrate synthase; Provisional.
Length = 372
Score = 255 bits (654), Expect = 1e-68
Identities = 129/364 (35%), Positives = 193/364 (53%), Gaps = 18/364 (4%)
Query: 66 LLYRGYPIEQLSEKSDFLEVCYLLLHGELANVSQQKDFNDKISRHALLNENMSRFFMGFP 125
L Y GY I+ L+E + F EV YLL H +L N + +F +++S +A + + +
Sbjct: 25 LTYVGYNIDDLAENASFEEVVYLLWHRKLPNKQELAEFKEQLSENAKVPGEIIEHLKQYD 84
Query: 126 -SSAHPMAMLVSAVGALSSFYYSPSGVQDLEQCVNVSLRMIAKISTIAAMIYKYSIGQPF 184
HPM++L +A+ L Y + + D E ++R+ AK+ TI A + G
Sbjct: 85 LKKVHPMSVLRTAISMLG-LYDEEAEIMDEEANYRKAVRLQAKVPTIVAAFSRIRKGLDP 143
Query: 185 VYPRSDLDYASNFLHMCFSVPCAEYQVNPLLARAMNRIFILHADHEQNASTSTVRLAGSS 244
V PR DL A+NFL+M + + + A N+ +LHADHE NAST T R+ ++
Sbjct: 144 VEPRKDLSLAANFLYML-----NGEEPDEVEVEAFNKALVLHADHELNASTFTARVCVAT 198
Query: 245 GADPFACIAAGVACLGGRAHGGANEEALNMLMEIGSLERIPHYIMRAKDKNDPFRIMGFG 304
+D ++ I A + L G HGGANE + ML EIG E + YI + +IMGFG
Sbjct: 199 LSDVYSGITAAIGALKGPLHGGANENVMKMLTEIGEEENVESYIHNKLQNKE--KIMGFG 256
Query: 305 HRVYRNHDPRCRIMRETMYEVLEVTGRFNDPIAQVAIELERIALEDEYFIERKLYPNVDF 364
HRVYR DPR + +RE + + G + ++I++E I + E+ L PNVDF
Sbjct: 257 HRVYRQGDPRAKHLREMSKRLTVLLGE--EKWYNMSIKIEEIVTK-----EKGLPPNVDF 309
Query: 365 YSGITLRALGFPTNLFTVLFAVARTAGWVSQWTEMIVDPSRRIGRPRQLYTGALKRDYVP 424
YS LG +LFT +FA++R +GW++ E + R+ RPR Y G + YVP
Sbjct: 310 YSASVYHCLGIDHDLFTPIFAISRMSGWLAHILEQYEN--NRLIRPRADYVGPTHQVYVP 367
Query: 425 LEER 428
+EER
Sbjct: 368 IEER 371
>gnl|CDD|184466 PRK14033, PRK14033, citrate synthase; Provisional.
Length = 375
Score = 247 bits (632), Expect = 5e-66
Identities = 118/368 (32%), Positives = 181/368 (49%), Gaps = 33/368 (8%)
Query: 66 LLYRGYPIEQLSEKSDFLEVCYLLLHGELANVSQQKDFNDKISRHALLNENMSRFFMGFP 125
L YRGYP++ L+ + F EV YLL +GEL ++ F+ + + L+ ++ P
Sbjct: 33 LTYRGYPVQDLAARCSFEEVAYLLWNGELPTDAELALFSQRERAYRRLDRSVLSLIDKLP 92
Query: 126 SSAHPMAML---VSAVGALSSFYYSPSGVQDLEQCVNVSLRMIAKISTIAAMIYKYSIGQ 182
++ HPM ++ VS +GA S +L + +LR+ A + TI A + G
Sbjct: 93 TTCHPMDVVRTAVSYLGAEDPEADDSSPEANLAK----ALRLFAVLPTIVAADQRRRRGL 148
Query: 183 PFVYPRSDLDYASNFLHMCF-SVPCAEYQVNPLLARAMNRIFILHADHEQNASTSTVRLA 241
+ PRSDL YA NFLHMCF VP E + RA IL+A+H NAST T R+
Sbjct: 149 DPIAPRSDLGYAENFLHMCFGEVPEPE------VVRAFEVSLILYAEHSFNASTFTARVI 202
Query: 242 GSSGADPFACIAAGVACLGGRAHGGANEEALNMLMEIGSLERIPHYIMRAKDKNDPFRIM 301
S+ +D ++ + + L G HGGANE ++ ++EIG R ++ A + + ++M
Sbjct: 203 TSTLSDIYSAVTGAIGALKGPLHGGANEAVMHTMLEIGDPARAAEWLRDALARKE--KVM 260
Query: 302 GFGHRVYRNHDPRCRIMRETMYEVLEVTGRFNDPIAQVAIELERI--ALEDEYFIERKLY 359
GFGHRVY++ D R M+ + V V I ALE +
Sbjct: 261 GFGHRVYKHGDSRVPTMKAALRRVAAVRDG---------QRWLDIYEALEKAMAEATGIK 311
Query: 360 PNVDFYSGITLRALGFPTNLFTVLFAVARTAGWVSQWTEMIVD--PSRRIGRPRQLYTGA 417
PN+DF +G +GF + FT +F ++R G WT I++ S + RP Y G
Sbjct: 312 PNLDFPAGPAYYLMGFDIDFFTPIFVMSRITG----WTAHIMEQRASNALIRPLSEYNGP 367
Query: 418 LKRDYVPL 425
+R+ P+
Sbjct: 368 EQREVPPI 375
>gnl|CDD|183461 PRK12349, PRK12349, citrate synthase 3; Provisional.
Length = 369
Score = 207 bits (529), Expect = 5e-54
Identities = 110/383 (28%), Positives = 192/383 (50%), Gaps = 28/383 (7%)
Query: 41 TYDPAFSSTASCKSKITFIDGNNGILLYRGYPIEQLSEKSDFLEVCYLLLHGELANVSQQ 100
+ P + ++KI+F+D G ++ +GY + +LS+ ++L++ +LLL L N ++
Sbjct: 4 KFSPGLDGVIAAETKISFLDTVKGEIVIQGYDLIELSKTKEYLDIVHLLLEEHLPNEDEK 63
Query: 101 KDFNDKISRHALLNENMSRFFMGFPSSAHPMAMLVSAVGALSSFYYSPSGVQDLEQCVNV 160
K+ + E + P HPM L + V AL+ + + ++D VN
Sbjct: 64 ATLEKKLKEEYAVPEGVFNILKALPKETHPMDGLRTGVSALAGY---DNDIEDRSLEVNK 120
Query: 161 S--LRMIAKISTIAAMIYKYSIGQPFVYPRSDLDYASNFLHMCFSVPCAEYQVNPLLARA 218
S ++++K+ I A Y + + P +L Y++NFL+M + L +
Sbjct: 121 SRAYKLLSKVPNIVANSYHILNNEEPIEPLKELSYSANFLYM-----LTGKKPTELEEKI 175
Query: 219 MNRIFILHADHEQNASTSTVRLAGSSGADPFACIAAGVACLGGRAHGGANEEALNMLMEI 278
+R +L+++HE ST T R+ S+ +D + + VA L G HGGANE + ML+E
Sbjct: 176 FDRSLVLYSEHEMPNSTFTARVIASTQSDLYGALTGAVASLKGSLHGGANEAVMYMLLEA 235
Query: 279 GSLERIPHYIMR---AKDKNDPFRIMGFGHRVY-RNHDPRCRIMRETMYEVLEVTGRFND 334
G++E+ + + K+K IMGFGHRVY + DPR +M+E + ++ +V G +
Sbjct: 236 GTVEKFEELLQKKLYNKEK-----IMGFGHRVYMKKMDPRALMMKEALKQLCDVKGDYT- 289
Query: 335 PIAQVAIELERIALEDEYFIERKLYPNVDFYSGITLRALGFPTNLFTVLFAVARTAGWVS 394
+ ++ E+I + E+ LYPN+D+Y+ LG P L+T +F +RT G +
Sbjct: 290 -LYEMCEAGEKIMEK-----EKGLYPNLDYYAAPVYWMLGIPIQLYTPIFFSSRTVGLCA 343
Query: 395 QWTEMIVDPSRRIGRPRQLYTGA 417
E + R+ RPR Y G
Sbjct: 344 HVIEQHAN--NRLFRPRVNYIGE 364
>gnl|CDD|183463 PRK12351, PRK12351, methylcitrate synthase; Provisional.
Length = 378
Score = 198 bits (507), Expect = 2e-51
Identities = 115/372 (30%), Positives = 188/372 (50%), Gaps = 34/372 (9%)
Query: 66 LLYRGYPIEQLSEKSDFLEVCYLLLHGELANVSQQKDFNDKISRHALLNENMSRFFMGFP 125
L YRGY I L+E +F EV +LL+HG+L ++ + K+ L + P
Sbjct: 32 LHYRGYDILDLAEHCEFEEVAHLLVHGKLPTQAELAAYKTKLKALRGLPAAVKTVLEAIP 91
Query: 126 SSAHPMAML---VSAVGALS--SFYYSPSGVQDLEQCVNVSLRMIAKISTIAAMIYKYSI 180
++AHPM ++ VS +G L ++ SG +D ++ R++A + +I Y YS
Sbjct: 92 AAAHPMDVMRTGVSVLGCLLPEKEDHNFSGARD------IADRLLASLGSILLYWYHYSH 145
Query: 181 GQPFVYPRSDLD-YASNFLHMCFSVPCAEYQVNPLLARAMNRIFILHADHEQNASTSTVR 239
+ +D D +FLH+ +E +AM+ IL+A+HE NAST T R
Sbjct: 146 NGRRIEVETDDDSIGGHFLHLLHGKKPSE-----SWVKAMHTSLILYAEHEFNASTFTAR 200
Query: 240 LAGSSGADPFACIAAGVACLGGRAHGGANEEALNMLMEIGSLERIPHYIMR---AKDKND 296
+ +G+D ++ I + L G HGGANE A + + + I R K+
Sbjct: 201 VIAGTGSDMYSAITGAIGALRGPKHGGANEVAFEIQQRYDTPDEAEADIRRRVENKEV-- 258
Query: 297 PFRIMGFGHRVYRNHDPRCRIMRETMYEVLEVTGRFNDPIAQVAIELERIALEDEYFIER 356
++GFGH VY DPR ++++E ++ + G + + +A LE + E E+
Sbjct: 259 ---VIGFGHPVYTISDPRNKVIKEVAKKLSKEAG--DTKLYDIAERLETVMWE-----EK 308
Query: 357 KLYPNVDFYSGITLRALGFPTNLFTVLFAVARTAGWVSQWTEMIVDPSRRIGRPRQLYTG 416
K++PN+D++S ++ +G PT +FT LF ++RT GW + E D +I RP YTG
Sbjct: 309 KMFPNLDWFSAVSYHMMGVPTAMFTPLFVISRTTGWAAHVIEQRQD--NKIIRPSANYTG 366
Query: 417 ALKRDYVPLEER 428
R +VP+E+R
Sbjct: 367 PEDRKFVPIEKR 378
>gnl|CDD|184465 PRK14032, PRK14032, citrate synthase; Provisional.
Length = 447
Score = 194 bits (496), Expect = 3e-50
Identities = 127/405 (31%), Positives = 187/405 (46%), Gaps = 63/405 (15%)
Query: 64 GILLYRGYPIEQLSEKSD------FLEVCYLLLHGELANVSQQKDFNDKISRHALLNENM 117
G L YRGY I+ L F EV YLLL GEL + +F + + + L +
Sbjct: 66 GKLYYRGYDIKDLVNGFLKEKRFGFEEVAYLLLFGELPTKEELAEFTELLGDYRELPDGF 125
Query: 118 SR-FFMGFPSSAHPMAMLVSAVGALSSFYYSPSGVQDLEQCVNVSLRMIAKISTIAAMIY 176
+R + PS M L +V AL S+ +P ++ + S+ +IA+ T+A Y
Sbjct: 126 TRDMILKAPSK-DIMNSLARSVLALYSYDDNPDDT-SIDNVLRQSISLIARFPTLAVYAY 183
Query: 177 K----YSIGQPFV--YPRSDLDYASNFLHM-----CFSVPCAEYQVNPLLARAMNRIFIL 225
+ Y G+ P+ +L A N L+M ++ L AR ++ +L
Sbjct: 184 QAYRHYHDGKSLYIHPPKPELSTAENILYMLRPDNKYT---------ELEARLLDLALVL 234
Query: 226 HADHEQ-NASTSTVRLAGSSGADPFACIAAGVACLGGRAHGGANEEALNMLMEI------ 278
HA+H N ST T R+ SSG D ++ IAA + L G HGGAN + + M +I
Sbjct: 235 HAEHGGGNNSTFTTRVVSSSGTDTYSAIAAAIGSLKGPKHGGANIKVMEMFEDIKENVKD 294
Query: 279 -GSLERIPHYIMRAKDKNDPF----RIMGFGHRVYRNHDPRCRIMRETMYEVLEVTGRFN 333
+ I Y+ + +K + F I G GH VY DPR I+++ ++ + GR
Sbjct: 295 WEDEDEIADYLTKILNK-EAFDKSGLIYGMGHAVYTISDPRAVILKKFAEKLAKEKGREE 353
Query: 334 D-----PIAQVAIELERIALEDEYFIE-RKLY----PNVDFYSGITLRALGFPTNLFTVL 383
+ I ++A EL E R +Y NVDFYSG LG P L+T L
Sbjct: 354 EFNLYEKIEKLAPEL---------IAEERGIYKGVSANVDFYSGFVYDMLGIPEELYTPL 404
Query: 384 FAVARTAGWVSQWTEMIVDPSRRIGRPRQLYTGALKRDYVPLEER 428
FA+AR GW + E +V+ +I RP +R+YVPLEER
Sbjct: 405 FAIARIVGWSAHRIEELVNG-GKIIRPAYKSVLE-RREYVPLEER 447
>gnl|CDD|183462 PRK12350, PRK12350, citrate synthase 2; Provisional.
Length = 353
Score = 167 bits (425), Expect = 5e-42
Identities = 108/375 (28%), Positives = 162/375 (43%), Gaps = 49/375 (13%)
Query: 56 ITFIDGNNGILLYRGYPIEQLSEKSDFLEVCYLLLHGELANVSQQKDFNDKISRHALLNE 115
I DG+ G L YRG IE L + F +V LL+ G F +
Sbjct: 15 IAEPDGDGGALRYRGVDIEDLVGRVTFEDVWALLVDGR---------FGPGLP------- 58
Query: 116 NMSRFFMGFPSSAHPMAMLV---SAVGALSSFY-YSP----SGVQDLEQCVNVSLRMIAK 167
FP H V +A+ L+ + + P + S+ ++
Sbjct: 59 ----PAEPFPLPVHLGDARVDVQAALAMLAPVWGFRPLLDIDDLTARLDLARASVMALSA 114
Query: 168 ISTIAAMIYKYSIGQPFVYPRSDLDYASNFLHMCFSVPCAEYQVNPLLARAMNRIFILHA 227
++ A I QP V P+ ++D+A+ L E +P A++ ++ A
Sbjct: 115 VAQSARGIG-----QPAV-PQREIDHAATILERFMGRWRGE--PDPAHVAALDAYWVSAA 166
Query: 228 DHEQNASTSTVRLAGSSGADPFACIAAGVACLGGRAHGGANEEALNMLMEIGSLERIPHY 287
+H NAST T R+ S+GAD A ++ + L G HGGA L ML + +
Sbjct: 167 EHGMNASTFTARVIASTGADVAAALSGAIGALSGPLHGGAPARVLPMLDAVERTGDARGW 226
Query: 288 IMRAKDKNDPFRIMGFGHRVYRNHDPRCRIMRETMYEVLEVTGRFNDPIAQVAIELERIA 347
+ A D+ + R+MGFGHRVYR DPR R++R T R P +VA +E+ A
Sbjct: 227 VKGALDRGE--RLMGFGHRVYRAEDPRARVLRATA-------KRLGAPRYEVAEAVEQAA 277
Query: 348 LED--EYFIERKLYPNVDFYSGITLRALGFPTNLFTVLFAVARTAGWVSQWTEMIVDPSR 405
L + E +R L NV+F++ + L G P ++FT +F RTAGW + E
Sbjct: 278 LAELRERRPDRPLETNVEFWAAVLLDFAGVPAHMFTAMFTCGRTAGWSAHILEQKRT--G 335
Query: 406 RIGRPRQLYTGALKR 420
R+ RP Y G R
Sbjct: 336 RLVRPSARYVGPAPR 350
>gnl|CDD|181961 PRK09569, PRK09569, type I citrate synthase; Reviewed.
Length = 437
Score = 146 bits (371), Expect = 9e-36
Identities = 102/399 (25%), Positives = 165/399 (41%), Gaps = 55/399 (13%)
Query: 56 ITFIDGNNGILLYRGYPIEQLSEK------SDF---LEVCYLLLHGELANVSQQKDFNDK 106
I+++D GI +RG I + E S++ Y LL GE+ Q ++ +
Sbjct: 52 ISYLDPQEGIR-FRGKTIPETFEALPKAPGSEYPTVESFWYFLLTGEVPTQEQVQEVVAE 110
Query: 107 ISRHALLNENMSRFFMGFPSSAHPMAMLVSAVGAL------SSFYYSPS--GVQDLEQCV 158
+ + + + P +HPM ML + A+ + FY + E
Sbjct: 111 WKKRQNVPQYVIDAIRALPRDSHPMVMLSVGILAMQRESKFAKFYNEGKFNKMDAWEYMY 170
Query: 159 NVSLRMIAKISTIAAMIY--KYSIGQPFVYPRSDLDYASNFLHMCFSVPCAEYQVNPLLA 216
+ ++A+I IAA IY KY + + +LDY +NF HM
Sbjct: 171 EDASDLVARIPVIAAYIYNLKYKGDKQ-IPSDPELDYGANFAHM--------IGQPKPYK 221
Query: 217 RAMNRIFILHADHEQ-NASTSTVRLAGSSGADPFACIAAGVACLGGRAHGGANEEALNML 275
FILH+DHE N S T L S+ +D + +AG+ L G HG AN+E L +
Sbjct: 222 DVARMYFILHSDHESGNVSAHTTHLVASALSDAYYSYSAGLNGLAGPLHGLANQEVLGWI 281
Query: 276 MEI--------GSLERIPHYIMRAKDKNDPFRIMGFGHRVYRNHDPRCRIMRETMYEVLE 327
+ + E++ + + I G+GH V R DPR RE + L
Sbjct: 282 QQFQEKLGGEEPTKEQVEQALWDTLNAGQ--VIPGYGHAVLRKTDPRYTAQREFCLKHLP 339
Query: 328 VTGRFNDPIAQVAIELERIA---LEDEYFIERKLYPNVDFYSGITLRALGFPT-NLFTVL 383
+DP+ ++ + +A L E+ + +PNVD SG+ G + +TVL
Sbjct: 340 -----DDPLFKLVAMIFEVAPGVLT-EHGKTKNPWPNVDAQSGVIQWYYGVKEWDFYTVL 393
Query: 384 FAVARTAGWVSQ--WTEMIVDPSRRIGRPRQLYTGALKR 420
F V R G ++ W + I RP+ + T L++
Sbjct: 394 FGVGRALGVMANITWDRGLGYA---IERPKSVTTEMLEK 429
>gnl|CDD|130853 TIGR01793, cit_synth_euk, citrate (Si)-synthase, eukaryotic. This
model includes both mitochondrial and peroxisomal forms
of citrate synthase. Citrate synthase is the entry point
to the TCA cycle from acetyl-CoA. Peroxisomal forms,
such as SP:P08679 from yeast (recognized by the
C-terminal targeting motif SKL) act in the glyoxylate
cycle. Eukaryotic homologs excluded by the high trusted
cutoff of this model include a Tetrahymena thermophila
citrate synthase that doubles as a filament protein, a
putative citrate synthase from Plasmodium falciparum (no
TCA cycle), and a methylcitrate synthase from
Aspergillus nidulans.
Length = 427
Score = 140 bits (355), Expect = 5e-34
Identities = 110/354 (31%), Positives = 162/354 (45%), Gaps = 40/354 (11%)
Query: 87 YLLLHGELANVSQQKDFNDKISRHALLNENMSRFFMGFPSSAHPMAMLVSAVGAL---SS 143
+LLL G++ + Q + + A L E++ + P + HPMA +AV AL S
Sbjct: 92 WLLLTGKVPSEEQVDALSAEWRARADLPEHVYKTIDALPVTLHPMAQFATAVMALQVESE 151
Query: 144 FYYS-PSGVQD---LEQCVNVSLRMIAKISTIAAMIYK--YSIGQPFVYPRSDLDYASNF 197
F + G+ E S+ +IAK+ T+AA IY+ Y GQ DY++NF
Sbjct: 152 FAKAYAKGIHKTKYWEYTYEDSMDLIAKLPTVAAYIYRNMYKDGQSISI-DDSKDYSANF 210
Query: 198 LHMCFSVPCAEYQVNPLLARAMNRIFILHADHEQ-NASTSTVRLAGSSGADPFACIAAGV 256
HM Y +P M +H+DHE N S T L GS+ +DP+ AA +
Sbjct: 211 AHML------GYD-SPSFQELMRLYLTIHSDHEGGNVSAHTGHLVGSALSDPYLSFAAAL 263
Query: 257 ACLGGRAHGGANEEALNMLMEIGSL-------ERIPHYIMRAKDKNDPFRIMGFGHRVYR 309
L G HG AN+E L L + S E++ YI K N + G+GH V R
Sbjct: 264 NGLAGPLHGLANQEVLLWLKSVVSECGENVTKEQLKDYIW--KTLNSGKVVPGYGHAVLR 321
Query: 310 NHDPRCRIMRETMYEVLEVTGRFNDPIAQVAIELERIA--LEDEYFIERKLYPNVDFYSG 367
DPR RE + L +DP+ ++ L +I + E + +PNVD +SG
Sbjct: 322 KTDPRYICQREFALKHLP-----DDPLFKLVSNLYKIVPGILTELGKVKNPWPNVDAHSG 376
Query: 368 ITLRALGFP-TNLFTVLFAVARTAGWVSQ--WTEMIVDPSRRIGRPRQLYTGAL 418
+ L+ G +TVLF V+R G +SQ W + P + RP+ + T L
Sbjct: 377 VLLQYYGLTEARYYTVLFGVSRALGILSQLIWDRALGLP---LERPKSVSTEWL 427
>gnl|CDD|180478 PRK06224, PRK06224, citrate synthase; Provisional.
Length = 263
Score = 76.1 bits (188), Expect = 2e-14
Identities = 61/220 (27%), Positives = 86/220 (39%), Gaps = 27/220 (12%)
Query: 216 ARAMNRIFILHADHEQNASTSTVRLAGSSGADPFACIAAGVACLGGRAHGGANEEALNML 275
AR ++ + + DH S + R+ S G +AAG+ G HGGA E+A +L
Sbjct: 55 ARLLDAVLVALVDHGLTPSAAAARMTASGGESLQGAVAAGL-LALGSVHGGAGEQAAELL 113
Query: 276 MEI-------GSLERIPHYI---MRAKDKNDPFRIMGFGHRVYRNHDPRCRIMRETMYEV 325
EI L+ I RA K R+ GFGH +++ DPR + +
Sbjct: 114 QEIAAAADAGADLDAAARAIVAEYRAAGK----RVPGFGHPLHKPVDPRAPRLLA-LARE 168
Query: 326 LEVTGRFNDPIAQVAIELERIALEDEYFIERKLYPNVDFYSGITLRALGFPTNLFTVLFA 385
V GR + L + L NVD L LGFP L LF
Sbjct: 169 AGVAGRHCRLAEALEAALAAAK-------GKPLPLNVDGAIAAILADLGFPPALARGLFV 221
Query: 386 VARTAGWVSQWTEMIVDPSRRIGR-PRQL---YTGALKRD 421
++R AG V+ E + P P + YTG R+
Sbjct: 222 ISRAAGLVAHVWEELQQPIGFRIWDPAEEAVEYTGPPPRE 261
Score = 36.0 bits (84), Expect = 0.021
Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 53 KSKITFIDGNNGILLYRGYPIEQLSEKSDFLEVCYLLLHGEL 94
++ I+ + + RGY +E L K F ++ +LLL G L
Sbjct: 10 RTSISDVTPEE--IYVRGYDLEDLIGKLSFTDMIFLLLRGRL 49
>gnl|CDD|178137 PLN02522, PLN02522, ATP citrate (pro-S)-lyase.
Length = 608
Score = 41.0 bits (96), Expect = 6e-04
Identities = 32/137 (23%), Positives = 58/137 (42%), Gaps = 26/137 (18%)
Query: 186 YPRSDLDYASNFLHMCFSVPCAEYQVNPLLARAMNRIFILHADHEQNASTSTVRLAGSSG 245
+ RS Y + F+ MC + CA++ P ++ A N I + +G
Sbjct: 391 FKRSLPRYCTKFIEMCIML-CADH--GPCVSGAHNTI-----------------VTARAG 430
Query: 246 ADPFACIAAGVACLGGRAHGGANEEALNMLMEIGSLERIPH-YIMRAKDKNDPFRIMGFG 304
D + + +G+ +G R GGA ++A + P+ ++ K K R+ G G
Sbjct: 431 KDLVSSLVSGLLTIGPR-FGGAIDDAARYFKDAYDRGLTPYEFVEGMKKKG--IRVPGIG 487
Query: 305 HRVYR--NHDPRCRIMR 319
HR+ N D R +++
Sbjct: 488 HRIKSRDNRDKRVELLQ 504
>gnl|CDD|178119 PLN02503, PLN02503, fatty acyl-CoA reductase 2.
Length = 605
Score = 34.8 bits (80), Expect = 0.038
Identities = 30/117 (25%), Positives = 44/117 (37%), Gaps = 8/117 (6%)
Query: 139 GALSSFYYSPSGVQDL---EQCVNVSLRMIAKI-STIAAMIYKYSIGQPFVYPRSDLDYA 194
G L+ F P+GV D+ + VN +L +AK I Y I V P D A
Sbjct: 406 GQLTGFLADPNGVLDVVPADMVVNATLAAMAKHGGAAKPEINVYQIASSVVNPLVFQDLA 465
Query: 195 SNFLHMCFSVPCAEYQVNPLLARAMNRIFIL---HADHEQNASTSTVRLAGSSGADP 248
S P + + P+ M ++F + H + LAG S +D
Sbjct: 466 RLLYEHYKSSPYMDSKGRPIHVPPM-KLFSSMEDFSSHLWRDALLRSGLAGMSSSDR 521
>gnl|CDD|184328 PRK13790, PRK13790, phosphoribosylamine--glycine ligase;
Provisional.
Length = 379
Score = 29.0 bits (65), Expect = 2.6
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 9/60 (15%)
Query: 324 EVLEVTGRFNDPIAQVAI-ELER------IALEDEYFIERKLYPNVDFYSGITLRALGFP 376
+V+E RF DP AQV + +E I L++ E K + G+ L + G+P
Sbjct: 242 KVIEFNARFGDPEAQVLLSRMESDLMQHIIDLDEGKRTEFKWKN--ESIVGVMLASKGYP 299
>gnl|CDD|162436 TIGR01586, yopT_cys_prot, cysteine protease domain, YopT-type. The
model represents a cysteine protease domain found in
proteins of bacteria that include plant pathogens
(Pseudomonas syringae), root nodule bacteria, and
intracellular pathogens (e.g. Yersinia pestis,
Haemophilus ducreyi, Pasteurella multocida, Chlamydia
trachomatis) of animal hosts. The domain features a
catalytic triad of Cys, His, and Asp. Sequences can be
extremely divergent outside of a few well-conserved
motifs, and additional members may exist that are
detected by this model. YopT, a virulence effector
protein of Yersinia pestis, cleaves and releases host
cell Rho GTPases from the membrane, thereby disrupting
the actin cytoskeleton. Members of the family from
pathogenic bacteria are likely to be pathogenesis
factors.
Length = 196
Score = 28.6 bits (64), Expect = 2.8
Identities = 19/65 (29%), Positives = 23/65 (35%), Gaps = 9/65 (13%)
Query: 107 ISRHAL---LNENMSRFF------MGFPSSAHPMAMLVSAVGALSSFYYSPSGVQDLEQC 157
S HAL FF FPS + + LS +Y SPS Q L
Sbjct: 131 GSAHALALSQQGGSFTFFDPNFGEFDFPSLEAALEWMAQLFKNLSGYYGSPSQRQQLASV 190
Query: 158 VNVSL 162
VN +
Sbjct: 191 VNYKV 195
>gnl|CDD|179465 PRK02731, PRK02731, histidinol-phosphate aminotransferase;
Validated.
Length = 367
Score = 28.6 bits (65), Expect = 2.9
Identities = 15/57 (26%), Positives = 23/57 (40%), Gaps = 7/57 (12%)
Query: 347 ALEDEYFIERKLYPNVDFYSGIT--LRALGFP-----TNLFTVLFAVARTAGWVSQW 396
AL+D+ F+E+ N + + +T L LG N V F + A Q
Sbjct: 267 ALDDDAFVEKSRALNAEGMAWLTEFLAELGLEYIPSVGNFILVDFDDGKDAAEAYQA 323
>gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL.
Members of this family are the PhnL protein of C-P
lyase systems for utilization of phosphonates. These
systems resemble phosphonatase-based systems in having a
three component ABC transporter, where TIGR01097 is the
permease, TIGR01098 is the phosphonates binding protein,
and TIGR02315 is the ATP-binding cassette (ABC) protein.
They differ, however, in having, typically, ten or more
additional genes, many of which are believed to form a
membrane-associated C-P lysase complex. This protein
(PhnL) and the adjacent-encoded PhnK (TIGR02323)
resemble transporter ATP-binding proteins but are
suggested, based on mutatgenesis studies, to be part of
this C-P lyase complex rather than part of a transporter
per se.
Length = 224
Score = 28.5 bits (64), Expect = 3.3
Identities = 12/34 (35%), Positives = 15/34 (44%)
Query: 188 RSDLDYASNFLHMCFSVPCAEYQVNPLLARAMNR 221
R + Y S FL + V E PLL R + R
Sbjct: 89 RKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPR 122
>gnl|CDD|178884 PRK00128, ipk, 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase;
Provisional.
Length = 286
Score = 28.2 bits (64), Expect = 4.2
Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 7/47 (14%)
Query: 217 RAMNRIFILHADHEQNASTSTVRLAGSSGAD-PFACIAAGVACLGGR 262
R +N+++ L E+ A + G+D PF CI G A GR
Sbjct: 111 RGLNKLWNLGLSLEELA-----EIGLEIGSDVPF-CIYGGTALATGR 151
>gnl|CDD|171888 PRK13187, PRK13187, UDP-3-O-[3-hydroxymyristoyl]
N-acetylglucosamine deacetylase; Reviewed.
Length = 304
Score = 27.9 bits (62), Expect = 5.3
Identities = 13/36 (36%), Positives = 16/36 (44%)
Query: 371 RALGFPTNLFTVLFAVARTAGWVSQWTEMIVDPSRR 406
AL P VL V T G Q EM ++P+ R
Sbjct: 132 VALDAPKRFIRVLRTVVVTDGEGEQRREMRIEPAPR 167
>gnl|CDD|131035 TIGR01980, sufB, FeS assembly protein SufB. This protein, SufB,
forms a cytosolic complex SufBCD. This complex enhances
the cysteine desulfurase of SufSE. The system, together
with SufA, is believed to act in iron-sulfur cluster
formation during oxidative stress. Note that SufC
belongs to the family of ABC transporter ATP binding
proteins, so this protein, encoded by an adjacent gene,
has often been annotated as a transporter component.
Length = 448
Score = 27.7 bits (62), Expect = 5.8
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 119 RFFMG-FPSSAHPMAMLVSAVGALSSFYYSPSGVQ 152
+FM P S + A L AV + SF Y P GV+
Sbjct: 151 EYFMSVVPPSDNKFAALNGAVWSGGSFVYVPKGVR 185
>gnl|CDD|130994 TIGR01939, nqrD, NADH:ubiquinone oxidoreductase,
Na(+)-translocating, D subunit. This model represents
the NqrD subunit of the six-protein, Na(+)-pumping
NADH-quinone reductase of a number of marine and
pathogenic Gram-negative bacteria. This oxidoreductase
complex functions primarily as a sodium ion pump.
Length = 207
Score = 27.8 bits (62), Expect = 6.1
Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 5/49 (10%)
Query: 127 SAHPMAMLVSAVGALSSFYYSPSGVQDLEQCVNVSLRMIAKISTIAAMI 175
+A MA+ V+ V S+F+ S L + S+RMI ++ IA+++
Sbjct: 39 TAIVMAIAVTFVTGFSNFFVSL-----LRNTIPNSIRMIVQLVIIASLV 82
>gnl|CDD|115789 pfam07158, MatC_N, Dicarboxylate carrier protein MatC N-terminus.
This family represents the N-terminal region of the
bacterial dicarboxylate carrier protein MatC. The MatC
protein is an integral membrane protein that could
function as a malonate carrier.
Length = 149
Score = 27.4 bits (61), Expect = 6.7
Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 9/32 (28%)
Query: 374 GFPTNLF------TVLFAVARTAG---WVSQW 396
GFP +LF T LFA+ART G W+
Sbjct: 51 GFPGDLFLTLVAVTYLFAIARTNGTIDWLVHH 82
>gnl|CDD|181337 PRK08266, PRK08266, hypothetical protein; Provisional.
Length = 542
Score = 27.7 bits (62), Expect = 6.9
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 202 FSVPCAE-YQVNPLLARAMNRIFILHADHEQNAS 234
F +P A+ Y + L +A +RI ++H HEQ A
Sbjct: 23 FGLPGAQLYWLFDALYKAGDRIRVIHTRHEQAAG 56
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.323 0.138 0.412
Gapped
Lambda K H
0.267 0.0690 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 7,232,446
Number of extensions: 475057
Number of successful extensions: 931
Number of sequences better than 10.0: 1
Number of HSP's gapped: 847
Number of HSP's successfully gapped: 32
Length of query: 429
Length of database: 5,994,473
Length adjustment: 96
Effective length of query: 333
Effective length of database: 3,920,105
Effective search space: 1305394965
Effective search space used: 1305394965
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 59 (26.6 bits)