RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254780355|ref|YP_003064768.1| type II citrate synthase
[Candidatus Liberibacter asiaticus str. psy62]
(429 letters)
>3msu_A Citrate synthase; helix bundle, APHA-beta fold, csgid, center for
structural G of infectious diseases, transferase; HET:
OAA; 1.84A {Francisella tularensis}
Length = 427
Score = 491 bits (1266), Expect = e-139
Identities = 213/424 (50%), Positives = 295/424 (69%), Gaps = 6/424 (1%)
Query: 1 MTDKFAKLHLGHE--EIDLPIKEGSLGSSVLDISFLHKNGIFTYDPAFSSTASCKSKITF 58
+ K+A L + EI+LP+ SLG+ +D+S L K+GIFTYDP F STA+C+SKIT+
Sbjct: 8 LMSKYATLKYADKNIEIELPVYSPSLGNDCIDVSSLVKHGIFTYDPGFMSTAACESKITY 67
Query: 59 IDGNNGILLYRGYPIEQLSEKSDFLEVCYLLLHGELANVSQQKDFNDKISRHALLNENMS 118
IDG G+LL+RGYPIE+ ++KS++ +CY L++GEL Q K F +I + E++
Sbjct: 68 IDGGKGVLLHRGYPIEEWTQKSNYRTLCYALIYGELPTDEQVKSFRQEIINKMPVCEHVK 127
Query: 119 RFFMGFPSSAHPMAMLVSAVGALSSFYYSPSGVQDLEQCVNVSLRMIAKISTIAAMIYKY 178
P HPM+ L++ V L++ + E V+ ++AKI+TIAAM Y++
Sbjct: 128 AAIAAMPQHTHPMSSLIAGVNVLAAEHIHNG---QKESQDEVAKNIVAKIATIAAMAYRH 184
Query: 179 SIGQPFVYPRSDLDYASNFLHMCFSVPCAEYQVNPLLARAMNRIFILHADHEQNASTSTV 238
+ G+ F+ P+ + YA NFL+M F+ Y+ + L +AM+ IF+LHADHEQNASTSTV
Sbjct: 185 NHGKKFLEPKMEYGYAENFLYMMFA-DDESYKPDELHIKAMDTIFMLHADHEQNASTSTV 243
Query: 239 RLAGSSGADPFACIAAGVACLGGRAHGGANEEALNMLMEIGSLERIPHYIMRAKDKNDPF 298
RL+GS+G P+A I AG+ L G AHGGANE L ML EIGS E I YI +AKDK+DPF
Sbjct: 244 RLSGSTGNSPYAAIIAGITALWGPAHGGANEAVLKMLSEIGSTENIDKYIAKAKDKDDPF 303
Query: 299 RIMGFGHRVYRNHDPRCRIMRETMYEVLEVTGRFNDPIAQVAIELERIALEDEYFIERKL 358
R+MGFGHRVY+N DPR M++ E+L G ++P+ VA +LE IAL+DE+FIERKL
Sbjct: 304 RLMGFGHRVYKNTDPRATAMKKNCEEILAKLGHSDNPLLTVAKKLEEIALQDEFFIERKL 363
Query: 359 YPNVDFYSGITLRALGFPTNLFTVLFAVARTAGWVSQWTEMIVDPSRRIGRPRQLYTGAL 418
+ NVDFYSGI L+A+G P ++FT +FA+ART+GW+SQW EM+ DP+++IGRPRQLYTGA
Sbjct: 364 FSNVDFYSGIILKAMGIPEDMFTAIFALARTSGWISQWIEMVNDPAQKIGRPRQLYTGAT 423
Query: 419 KRDY 422
R++
Sbjct: 424 NRNF 427
>1k3p_A Type II citrate synthase; lyase; 2.20A {Escherichia coli} SCOP:
a.103.1.1 PDB: 1owb_A* 1owc_A 1nxe_A 1nxg_A*
Length = 426
Score = 488 bits (1258), Expect = e-139
Identities = 247/427 (57%), Positives = 320/427 (74%), Gaps = 3/427 (0%)
Query: 3 DKFAKLHL-GHEEIDLPIKEGSLGSSVLDISFLHKNGIFTYDPAFSSTASCKSKITFIDG 61
D AKL L G ++L + +G+LG V+DI L G+FT+DP F+STASC+SKITFIDG
Sbjct: 2 DTKAKLTLNGDTAVELDVLKGTLGQDVIDIRTLGSKGVFTFDPGFTSTASCESKITFIDG 61
Query: 62 NNGILLYRGYPIEQLSEKSDFLEVCYLLLHGELANVSQQKDFNDKISRHALLNENMSRFF 121
+ GILL+RG+PI+QL+ S++LEVCY+LL+GE Q +F ++RH +++E ++R F
Sbjct: 62 DEGILLHRGFPIDQLATDSNYLEVCYILLNGEKPTQEQYDEFKTTVTRHTMIHEQITRLF 121
Query: 122 MGFPSSAHPMAMLVSAVGALSSFYYSPSGVQDLEQCVNVSLRMIAKISTIAAMIYKYSIG 181
F +HPMA++ GAL++FY+ V + + R+++K+ T+AAM YKYSIG
Sbjct: 122 HAFRRDSHPMAVMCGITGALAAFYHDSLDVNNPRHREIAAFRLLSKMPTMAAMCYKYSIG 181
Query: 182 QPFVYPRSDLDYASNFLHMCFSVPCAEYQVNPLLARAMNRIFILHADHEQNASTSTVRLA 241
QPFVYPR+DL YA NFL+M FS PC Y+VNP+L RAM+RI ILHADHEQNASTSTVR A
Sbjct: 182 QPFVYPRNDLSYAGNFLNMMFSTPCEPYEVNPILERAMDRILILHADHEQNASTSTVRTA 241
Query: 242 GSSGADPFACIAAGVACLGGRAHGGANEEALNMLMEIGSLERIPHYIMRAKDKNDPFRIM 301
GSSGA+PFACIAAG+A L G AHGGANE AL ML EI S++ IP + RAKDKND FR+M
Sbjct: 242 GSSGANPFACIAAGIASLWGPAHGGANEAALKMLEEISSVKHIPEFFRRAKDKNDSFRLM 301
Query: 302 GFGHRVYRNHDPRCRIMRETMYEVLEVTGRFNDPIAQVAIELERIALEDEYFIERKLYPN 361
GFGHRVY+N+DPR +MRET +EVL+ G D + +VA+ELE IAL D YFIE+KLYPN
Sbjct: 302 GFGHRVYKNYDPRATVMRETCHEVLKELGT-KDDLLEVAMELENIALNDPYFIEKKLYPN 360
Query: 362 VDFYSGITLRALGFPTNLFTVLFAVARTAGWVSQWTEMIVDPSRRIGRPRQLYTGALKRD 421
VDFYSGI L+A+G P+++FTV+FA+ART GW++ W+EM D +I RPRQLYTG KRD
Sbjct: 361 VDFYSGIILKAMGIPSSMFTVIFAMARTVGWIAHWSEMHSDGM-KIARPRQLYTGYEKRD 419
Query: 422 YVPLEER 428
+ +R
Sbjct: 420 FKSDIKR 426
>2h12_A Citrate synthase; acidophIle, acetic acid resistance, allostery,
transferase; HET: CMX; 1.85A {Acetobacter aceti}
Length = 436
Score = 454 bits (1169), Expect = e-128
Identities = 246/424 (58%), Positives = 314/424 (74%), Gaps = 1/424 (0%)
Query: 6 AKLHLGHEEIDLPIKEGSLGSSVLDISFLHKN-GIFTYDPAFSSTASCKSKITFIDGNNG 64
A + + + ++P+ G+LG V+DI L G+FT+DP + TA+C SKITFIDG+ G
Sbjct: 13 ATISVDGKSAEMPVLSGTLGPDVIDIRKLPAQLGVFTFDPGYGETAACNSKITFIDGDKG 72
Query: 65 ILLYRGYPIEQLSEKSDFLEVCYLLLHGELANVSQQKDFNDKISRHALLNENMSRFFMGF 124
+LL+RGYPI QL+E + + EV YLLL+GEL N +Q F + ++ H LL+E + FF GF
Sbjct: 73 VLLHRGYPIAQLAENASYEEVIYLLLNGELPNKAQYDTFTNTLTNHTLLHEQIRNFFNGF 132
Query: 125 PSSAHPMAMLVSAVGALSSFYYSPSGVQDLEQCVNVSLRMIAKISTIAAMIYKYSIGQPF 184
AHPMA+L VGALS+FY + + ++R+IAKI TIAA YKY+ G+ F
Sbjct: 133 RRDAHPMAILCGTVGALSAFYPDANDIAIPANRDLAAMRLIAKIPTIAAWAYKYTQGEAF 192
Query: 185 VYPRSDLDYASNFLHMCFSVPCAEYQVNPLLARAMNRIFILHADHEQNASTSTVRLAGSS 244
+YPR+DL+YA NFL M F+ Y+VNP+LARAMNRI ILHADHEQNASTSTVRLAGS+
Sbjct: 193 IYPRNDLNYAENFLSMMFARMSEPYKVNPVLARAMNRILILHADHEQNASTSTVRLAGST 252
Query: 245 GADPFACIAAGVACLGGRAHGGANEEALNMLMEIGSLERIPHYIMRAKDKNDPFRIMGFG 304
GA+PFACIAAG+A L G AHGGANE L ML IG E IP +I + KDKN ++MGFG
Sbjct: 253 GANPFACIAAGIAALWGPAHGGANEAVLKMLARIGKKENIPAFIAQVKDKNSGVKLMGFG 312
Query: 305 HRVYRNHDPRCRIMRETMYEVLEVTGRFNDPIAQVAIELERIALEDEYFIERKLYPNVDF 364
HRVY+N DPR +IM++T +EVL G +DP+ +A+ELE+IAL D+YF++RKLYPNVDF
Sbjct: 313 HRVYKNFDPRAKIMQQTCHEVLTELGIKDDPLLDLAVELEKIALSDDYFVQRKLYPNVDF 372
Query: 365 YSGITLRALGFPTNLFTVLFAVARTAGWVSQWTEMIVDPSRRIGRPRQLYTGALKRDYVP 424
YSGI L+A+G PT++FTVLFAVART GWVSQW EMI +P +RI RPRQLY GA +RDYVP
Sbjct: 373 YSGIILKAMGIPTSMFTVLFAVARTTGWVSQWKEMIEEPGQRISRPRQLYIGAPQRDYVP 432
Query: 425 LEER 428
L +R
Sbjct: 433 LAKR 436
>1iom_A Citrate synthase; open form, riken structural genomics/proteomics
initiative, RSGI, structural genomics, lyase; 1.50A
{Thermus thermophilus HB8} SCOP: a.103.1.1 PDB: 1ixe_A*
Length = 377
Score = 390 bits (1002), Expect = e-109
Identities = 144/378 (38%), Positives = 198/378 (52%), Gaps = 13/378 (3%)
Query: 52 CKSKITFIDGNNGILLYRGYPIEQLSEKSDFLEVCYLLLHGELANVSQQKDFNDKISRHA 111
+S++ +IDG G L Y G PI++L+EKS F E +LLLHG L + ++F+ ++R
Sbjct: 13 TESRMCYIDGQQGKLYYYGIPIQELAEKSSFEETTFLLLHGRLPRRQELEEFSAALARRR 72
Query: 112 LLNENMSRFFMGFPSSAHPMAMLVSAVGALSSFYYSPSGVQDLEQCVNVSLRMIAKISTI 171
L ++ F +P SAHPM+ L +AV + G E L +IAK +TI
Sbjct: 73 ALPAHLLESFKRYPVSAHPMSFLRTAVSEFGMLDPTE-GDISREALYEKGLDLIAKFATI 131
Query: 172 AAMIYKYSIGQPFVYPRSDLDYASNFLHMCFSVPCAEYQVNPLLARAMNRIFILHADHEQ 231
A + G+ + PR DL +A+NFL+M + +P AR M+ ILHA+H
Sbjct: 132 VAANKRLKEGKEPIPPREDLSHAANFLYMAN-----GVEPSPEQARLMDAALILHAEHGF 186
Query: 232 NASTSTVRLAGSSGADPFACIAAGVACLGGRAHGGANEEALNMLMEIGSLERIPHYIMRA 291
NAST T A S+ D ++ I A VA L G HGGANE + M+ EIG+ ER ++
Sbjct: 187 NASTFTAIAAFSTETDLYSAITAAVASLKGPRHGGANEAVMRMIQEIGTPERAREWVREK 246
Query: 292 KDKNDPFRIMGFGHRVYRNHDPRCRIMRETMYEVLEVTGRFNDPIAQVAIELERIALEDE 351
K + RIMG GHRVY+ DPR ++ + V E G + +E E +
Sbjct: 247 LAKKE--RIMGMGHRVYKAFDPRAGVLEKLARLVAEKHGHSKEYQILKIVEEE----AGK 300
Query: 352 YFIERKLYPNVDFYSGITLRALGFPTNLFTVLFAVARTAGWVSQWTEMIVDPSRRIGRPR 411
R +YPNVDFYSG+ LGF FT +FAVAR +GWV E + R+ RP
Sbjct: 301 VLNPRGIYPNVDFYSGVVYSDLGFSLEFFTPIFAVARISGWVGHILEYQ-ELDNRLLRPG 359
Query: 412 QLYTGALKRDYVPLEERE 429
Y G L YVPLE RE
Sbjct: 360 AKYVGELDVPYVPLEARE 377
>1o7x_A Citrate synthase; lyase, tricarboxylic acid cycle; 2.7A {Sulfolobus
solfataricus} SCOP: a.103.1.1
Length = 377
Score = 385 bits (989), Expect = e-107
Identities = 124/388 (31%), Positives = 198/388 (51%), Gaps = 13/388 (3%)
Query: 41 TYDPAFSSTASCKSKITFIDGNNGILLYRGYPIEQLSEKSDFLEVCYLLLHGELANVSQQ 100
+ + +TFIDG GIL YRGY IE L + E YL+L+G+L +
Sbjct: 3 VVSKGLENVIIKVTNLTFIDGEKGILRYRGYNIEDLVNYGSYEETIYLMLYGKLPTKKEL 62
Query: 101 KDFNDKISRHALLNENMSRFFMGFPSSAHPMAMLVSAVGALSSFYYSPSGVQDLEQCVNV 160
D K++ + + + P A + +L AL+S + + E
Sbjct: 63 NDLKAKLNEEYEVPQEVLDTIYLMPKEADAIGLLEVGTAALASIDKNF---KWKENDKEK 119
Query: 161 SLRMIAKISTIAAMIYKYSIGQPFVYPRSDLDYASNFLHMCFSVPCAEYQVNPLLARAMN 220
++ +IAK++T+ A +Y+ G P +A +FL F+ ++ AM+
Sbjct: 120 AISIIAKMATLVANVYRRKEGNKPRIPEPSDSFAKSFLLASFAREPTTDEI-----NAMD 174
Query: 221 RIFILHADHEQNASTSTVRLAGSSGADPFACIAAGVACLGGRAHGGANEEALNMLMEIGS 280
+ IL+ DHE AST+ +A S+ +D ++ + A +A L G HGGA EEA +EIG
Sbjct: 175 KALILYTDHEVPASTTAALVAASTLSDMYSSLTAALAALKGPLHGGAAEEAFKQFIEIGD 234
Query: 281 LERIPHYIMRAKDKNDPFRIMGFGHRVYRNHDPRCRIMRETMYEVLEVTGRFNDPIAQVA 340
R+ ++ K N R+MGFGHRVY+ +DPR +I ++ ++E ++A
Sbjct: 235 PNRVQNWFND-KVVNQKNRLMGFGHRVYKTYDPRAKIFKKLALTLIERNADAR-RYFEIA 292
Query: 341 IELERIALEDEYFIERKLYPNVDFYSGITLRALGFPTNLFTVLFAVARTAGWVSQWTEMI 400
+LE + + F + +YPN DFYSGI ALGFP +FT LFA++RT GW++ E +
Sbjct: 293 QKLEELG--IKQFSSKGIYPNTDFYSGIVFYALGFPVYMFTALFALSRTLGWLAHIIEYV 350
Query: 401 VDPSRRIGRPRQLYTGALKRDYVPLEER 428
+ R+ RPR LY G ++YV +++R
Sbjct: 351 EEQH-RLIRPRALYVGPEYQEYVSIDKR 377
>3hwk_A Methylcitrate synthase; niaid, ssgcid, structural genomics, seattle
structural genomics center for infectious disease,
tubercluosis; 2.30A {Mycobacterium tuberculosis}
Length = 414
Score = 383 bits (984), Expect = e-107
Identities = 104/369 (28%), Positives = 167/369 (45%), Gaps = 19/369 (5%)
Query: 54 SKITFIDGNNGILLYRGYPIEQLSEKSDFLEVCYLLLHGELANVSQQKDFNDKISRHALL 113
+ I+ + L YRGYP++ L+ + F +V +LL GEL ++ F+ + +
Sbjct: 61 TAISKVVPQTNSLTYRGYPVQDLAARCSFEQVAFLLWRGELPTDAELALFSQRERASRRV 120
Query: 114 NENMSRFFMGFPSSAHPMAMLVSAVGALSSFYYSPSGVQDLEQCVNVSLRMIAKISTIAA 173
+ +M P + HPM ++ +A+ L + D ++RM+A + TI A
Sbjct: 121 DRSMLSLLAKLPDNCHPMDVVRTAISYLGAEDPDE---DDAAANRAKAMRMMAVLPTIVA 177
Query: 174 MIYKYSIGQPFVYPRSDLDYASNFLHMCFSVPCAEYQVNPLLARAMNRIFILHADHEQNA 233
+ + G P + P S L YA NFLHMCF + A + IL+A+H NA
Sbjct: 178 IDMRRRRGLPPIAPHSGLGYAQNFLHMCFGEVP-----ETAVVSAFEQSMILYAEHGFNA 232
Query: 234 STSTVRLAGSSGADPFACIAAGVACLGGRAHGGANEEALNMLMEIGSLERIPHYIMRAKD 293
ST R+ S+ +D ++ + + L GR HGGANE ++ ++EIG ++
Sbjct: 233 STFAARVVTSTQSDIYSAVTGAIGALKGRLHGGANEAVMHDMIEIGDPANAREWLRAKLA 292
Query: 294 KNDPFRIMGFGHRVYRNHDPRCRIMRETMYEVLEVTGRFNDPIAQVAIELERIALEDEYF 353
+ + +IMGFGHRVYR+ D R M+ + V V + L E
Sbjct: 293 RKE--KIMGFGHRVYRHGDSRVPTMKRALERVGTVRD--GQRWLDIY-----QVLAAEMA 343
Query: 354 IERKLYPNVDFYSGITLRALGFPTNLFTVLFAVARTAGWVSQWTEMIVDPSRRIGRPRQL 413
+ PN+DF +G +GF FT +F ++R GW + E + RP
Sbjct: 344 SATGILPNLDFPTGPAYYLMGFDIASFTPIFVMSRITGWTAHIMEQATAN--ALIRPLSA 401
Query: 414 YTGALKRDY 422
Y G +R
Sbjct: 402 YCGHEQRVL 410
>2ibp_A Citrate synthase; disulfide bond, homodimer, thermophilic,
catenane, transferase; 1.60A {Pyrobaculum aerophilum
str}
Length = 409
Score = 349 bits (896), Expect = 7e-97
Identities = 133/388 (34%), Positives = 205/388 (52%), Gaps = 21/388 (5%)
Query: 52 CKSKITFIDGNNGILLYRGYPIEQLSEKSDFLEVCYLLLHGELANVSQQKDFNDKISRHA 111
+ I+ IDG GIL YRGY IE+L+ S + EV YL+L+G L + +D+ +++ ++
Sbjct: 32 KSTSISDIDGEKGILWYRGYRIEELARLSTYEEVSYLILYGRLPTKRELEDYINRMKKYR 91
Query: 112 LLNENMSRFFMGFPSSAHPMAMLVSAVGALSSFY-----------YSPSGVQDLEQCVNV 160
L+ + A+ +AV A ++ ++ E +
Sbjct: 92 ELHPATVEVIRNLAKAHPMFALE-AAVAAEGAYDEDNQKLIEALSVGRYKAEEKELAYRI 150
Query: 161 SLRMIAKISTIAAMIYKYSIGQPFVYPRSDLDYASNFLHMCFSVPCAEYQVNPLLARAMN 220
+ +++AK+ TI A Y++S G V PR DL +A+NFL+M F + +PL +R ++
Sbjct: 151 AEKLVAKMPTIVAYHYRFSRGLEVVRPRDDLGHAANFLYMMFG-----REPDPLASRGID 205
Query: 221 RIFILHADHEQNASTSTVRLAGSSGADPFACIAAGVACLGGRAHGGANEEALNMLMEIGS 280
ILHADHE AST + S+ +D ++ +AA +A L G HGGANE A+ +EIG+
Sbjct: 206 LYLILHADHEVPASTFAAHVVASTLSDLYSSVAAAIAALKGPLHGGANEMAVRNYLEIGT 265
Query: 281 LERIPHYIMRAKDKNDPFRIMGFGHRVYRNHDPRCRIMRETMYEVLEVTGRFNDPIAQVA 340
+ I+ A K ++MG GHRVY+ +DPR +I +E + + +A
Sbjct: 266 PAKAKE-IVEAATKPGGPKLMGVGHRVYKAYDPRAKIFKEFSRDY-VAKFGDPQNLFAIA 323
Query: 341 IELERIALEDEYFIERKLYPNVDFYSGITLRALGFPTNLFTVLFAVARTAGWVSQWTEMI 400
+E+ L YF +RKLYPNVDF+SGI +G P FT +FA++R GWV+ E
Sbjct: 324 SAIEQEVLSHPYFQQRKLYPNVDFWSGIAFYYMGIPYEYFTPIFAMSRVVGWVAHVLEYW 383
Query: 401 VDPSRRIGRPRQLYTGALKRDYVPLEER 428
+ RI RPR Y G Y+PLE+R
Sbjct: 384 ENN--RIFRPRACYIGPHDLQYIPLEQR 409
>1vgp_A 373AA long hypothetical citrate synthase; open form, transferase;
2.70A {Sulfolobus tokodaii}
Length = 373
Score = 343 bits (880), Expect = 6e-95
Identities = 136/387 (35%), Positives = 203/387 (52%), Gaps = 16/387 (4%)
Query: 42 YDPAFSSTASCKSKITFIDGNNGILLYRGYPIEQLSEKSDFLEVCYLLLHGELANVSQQK 101
+++IT+IDG G L YRGY I L+E S+F EV YL+L+G+L N +
Sbjct: 3 IKKGLEDVYVKETEITYIDGELGRLYYRGYSIYDLAEFSNFEEVSYLILYGKLPNREELN 62
Query: 102 DFNDKISRHALLNENMSRFFMGFPSSAHPMAMLVSAVGALSSFYYSPSGVQDLEQCVNVS 161
F +K+ L + + +F A PM +L +AV L D++
Sbjct: 63 WFQEKLREERYLPDFIIKFLREVRKDAQPMDILRTAVSLLGIEDSKNDERTDIKGI---- 118
Query: 162 LRMIAKISTIAAMIYKYSIGQPFVYPRSDLDYASNFLHMCFSVPCAEYQVNPLLARAMNR 221
++I+K TI A + G + P L ++ NFL+M + E + +AM+
Sbjct: 119 -KLISKFPTIVANYARLRKGLDIIEPDPKLSHSENFLYMLYGDRPNEIKS-----KAMDV 172
Query: 222 IFILHADHEQNASTSTVRLAGSSGADPFACIAAGVACLGGRAHGGANEEALNMLMEIGSL 281
ILH DHE NAST + S+ +D ++ I AG++ L G HGGAN EAL M EIGS
Sbjct: 173 TLILHIDHEMNASTFASLVVASTFSDLYSSIVAGISALKGPLHGGANYEALKMFKEIGSP 232
Query: 282 ERIPHYIMRAKDKNDPFRIMGFGHRVYRNHDPRCRIMRETMYEVLEVTGRFNDPIAQVAI 341
E++ YI+ RIMGFGHRVY+ +DPR RI+++ + E G + Q+A
Sbjct: 233 EKVNDYILNRLSNKQ--RIMGFGHRVYKTYDPRARILKQYAKLLAEKEGGEIYTLYQIAE 290
Query: 342 ELERIALEDEYFIERKLYPNVDFYSGITLRALGFPTNLFTVLFAVARTAGWVSQWTEMIV 401
++E I + +Y + +YPNVDF+S I +LGF + F +FA AR GWV+ E I
Sbjct: 291 KVEEIGI--KYLGPKGIYPNVDFFSSIVFYSLGFEPDFFPAVFASARVVGWVAHIMEYIK 348
Query: 402 DPSRRIGRPRQLYTGALKRDYVPLEER 428
D +I RP+ Y G + + Y+P++ R
Sbjct: 349 DN--KIIRPKAYYKGEIGKKYIPIDSR 373
>1aj8_A Citrate synthase; hyperthermostable, lyase; HET: COA CIT; 1.90A
{Pyrococcus furiosus} SCOP: a.103.1.1
Length = 371
Score = 312 bits (800), Expect = 9e-86
Identities = 127/380 (33%), Positives = 202/380 (53%), Gaps = 17/380 (4%)
Query: 49 TASCKSKITFIDGNNGILLYRGYPIEQLSEKSDFLEVCYLLLHGELANVSQQKDFNDKIS 108
++ I +IDG G L YRGY +E+L+E S F EV YLL G+L ++S+ ++F +++
Sbjct: 8 VYIDQTNICYIDGKEGKLYYRGYSVEELAELSTFEEVVYLLWWGKLPSLSELENFKKELA 67
Query: 109 RHALLNENMSRFFMGFPSSAHPMAMLVSAVGALSSFYYSPSGVQDLEQCVNVSLRMIAKI 168
+ L + + P + HPM L + + L + S E+ + + + AKI
Sbjct: 68 KSRGLPKEVIEIMEALPKNTHPMGALRTIISYLGNIDDSGDIPVTPEEVYRIGISVTAKI 127
Query: 169 STIAAMIYKYSIGQPFVYPRSDLDYASNFLHMCFSVPCAEYQVNPLLARAMNRIFILHAD 228
TI A Y+ G +V P+ L +A+NFL+M + +AM+ IL+A+
Sbjct: 128 PTIVANWYRIKNGLEYVPPKEKLSHAANFLYMLHGEEPPKEWE-----KAMDVALILYAE 182
Query: 229 HEQNASTSTVRLAGSSGADPFACIAAGVACLGGRAHGGANEEALNMLMEIGSLERIPHYI 288
HE NAST V GS+ +D ++ I AG+ L G HGGA EEA+ MEIGS E++ +
Sbjct: 183 HEINASTLAVMTVGSTLSDYYSAILAGIGALKGPIHGGAVEEAIKQFMEIGSPEKVEEWF 242
Query: 289 MRAKDKNDPFRIMGFGHRVYRNHDPRCRIMRETMYEVLEVTGRFNDPIAQVAIELERIAL 348
+A + MG GHRVY+ +DPR RI ++ + + + ++A LER+
Sbjct: 243 FKALQQKRKI--MGAGHRVYKTYDPRARIFKKYASK------LGDKKLFEIAERLERLV- 293
Query: 349 EDEYFIERKLYPNVDFYSGITLRALGFPTNLFTVLFAVARTAGWVSQWTEMIVDPSRRIG 408
+EY ++ + NVD++SG+ + P L+T +FA+ R AGW + E + RI
Sbjct: 294 -EEYLSKKGISINVDYWSGLVFYGMKIPIELYTTIFAMGRIAGWTAHLAEYVSHN--RII 350
Query: 409 RPRQLYTGALKRDYVPLEER 428
RPR Y G + + Y+P+E R
Sbjct: 351 RPRLQYVGEIGKKYLPIELR 370
>2p2w_A Citrate synthase; transferase, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; HET: FLC; 1.90A {Thermotoga maritima}
Length = 367
Score = 301 bits (771), Expect = 2e-82
Identities = 117/378 (30%), Positives = 191/378 (50%), Gaps = 25/378 (6%)
Query: 52 CKSKITFIDGNNGILLYRGYPIEQLSEKSDFLEVCYLLLHGELANVSQQKDFNDKISRHA 111
C+S I ++DG NG L YRG P+E+L+EKS F E Y L +G+L S+ ++F K++ +
Sbjct: 12 CESSICYLDGINGRLYYRGIPVEELAEKSTFEETAYFLWYGKLPTKSELEEFKRKMADYR 71
Query: 112 LLNENMSRFFMGFPSSAHPMAMLVSAVGALSSFYYSPSGVQDLEQCVNVSLRMIAKISTI 171
L P + H + +L + S + +++ + + TI
Sbjct: 72 ELPAEALGILYHLPKNLHYIDVLKIFLSIHGSMDGNDEDLREKAIR------VASVFPTI 125
Query: 172 AAMIYKYSIGQPFVYPRSDLDYASNFLHMCFSVPCAEYQVNPLLARAMNRIFILHADHEQ 231
A Y+YS G+ + PR DL + NF +M F + + + FIL + +
Sbjct: 126 LAYYYRYSKGKELIRPRKDLSHVENFYYMMFGERNEKIR-------LLESAFILLMEQDI 178
Query: 232 NASTSTVRLAGSSGADPFACIAAGVACLGGRAHGGANEEALNMLMEIGSLERIPHYIMRA 291
NAST + S+ +D ++CI + L G HGGA+E+ ML EIGS +R+ ++ +
Sbjct: 179 NASTFAALVIASTLSDLYSCIVGALGALKGPLHGGASEKVPPMLEEIGSEDRVEEFVQKC 238
Query: 292 KDKNDPFRIMGFGHRVYRNHDPRCRIMRETMYEVLEVTGRFNDPIAQVAIELERIALEDE 351
+ MGFGHRVY+ +DPR ++ + E + + ++A +LE + ++
Sbjct: 239 LKEKRKI--MGFGHRVYKTYDPRAVFLKRVLQEHFP-----DSKLFRIASKLEEYIVSNK 291
Query: 352 YFIERKLYPNVDFYSGITLRALGFPTNLFTVLFAVARTAGWVSQWTEMIVDPSRRIGRPR 411
+ +YPNVD YS + LGFP N+FT LFA AR GW + E + D ++ RP
Sbjct: 292 I---KNIYPNVDLYSSVLFEELGFPRNMFTALFATARVVGWTAHVIEYVSDN--KLIRPT 346
Query: 412 QLYTGALKRDYVPLEERE 429
Y G + +Y+P+E R+
Sbjct: 347 SEYVGPMDVEYIPIERRD 364
>1csh_A Citrate synthase; lyase(OXO-acid); HET: AMX; 1.65A {Gallus gallus}
SCOP: a.103.1.1 PDB: 1amz_A* 1csi_A* 1csr_A* 1css_A*
1al6_A* 6csc_A* 2cts_A* 3enj_A 1cts_A 4cts_A 1csc_A*
2csc_A* 3csc_A* 4csc_A* 5csc_A 5cts_A* 6cts_A* 5csc_B
Length = 435
Score = 300 bits (770), Expect = 3e-82
Identities = 104/415 (25%), Positives = 176/415 (42%), Gaps = 44/415 (10%)
Query: 38 GIFTYDPAFS---STASCKSKITFIDGNNGILLYRGYPIEQL---------SEKSDFLEV 85
G T D ++ + + +D + GI +RG+ I + E+ +
Sbjct: 32 GQITVDMSYGGMRGMKGLIYETSVLDPDEGIR-FRGFSIPECQKLLPKAGGGEEPLPEGL 90
Query: 86 CYLLLHGELANVSQQKDFNDKISRHALLNENMSRFFMGFPSSAHPMAMLVSAVGALSSFY 145
+LL+ G++ Q + + ++ A L ++ FP++ HPM+ L +A+ AL+S
Sbjct: 91 FWLLVTGQIPTPEQVSWVSKEWAKRAALPSHVVTMLDNFPTNLHPMSQLSAAITALNSES 150
Query: 146 YSPSGVQD-------LEQCVNVSLRMIAKISTIAAMIYKYSI--GQPFVYPRSDLDYASN 196
+ E ++ +IAK+ +AA IY+ G S LD++ N
Sbjct: 151 NFARAYAEGINRTKYWEFVYEDAMDLIAKLPCVAAKIYRNLYRAGSSIGAIDSKLDWSHN 210
Query: 197 FLHMCFSVPCAEYQVNPLLARAMNRIFILHADHE-QNASTSTVRLAGSSGADPFACIAAG 255
F +M M +H+DHE N S T L GS+ +DP+ AA
Sbjct: 211 FTNMLGYTDPQF-------TELMRLYLTIHSDHEGGNVSAHTSHLVGSALSDPYLSFAAA 263
Query: 256 VACLGGRAHGGANEEALNMLMEIGSLERIPHYIMRAKD-----KNDPFRIMGFGHRVYRN 310
+ L G HG AN+E L L ++ + +D N + G+GH V R
Sbjct: 264 MNGLAGPLHGLANQEVLLWLSQLQKDLGADASDEKLRDYIWNTLNSGRVVPGYGHAVLRK 323
Query: 311 HDPRCRIMRETMYEVLEVTGRFNDPIAQVAIELERIA--LEDEYFIERKLYPNVDFYSGI 368
DPR RE + L +DP+ ++ +L +I + E + +PNVD +SG+
Sbjct: 324 TDPRYTCQREFALKHL-----PSDPMFKLVAQLYKIVPNVLLEQGKAKNPWPNVDAHSGV 378
Query: 369 TLRALGFP-TNLFTVLFAVARTAGWVSQWTEMIVDPSRRIGRPRQLYTGALKRDY 422
L+ G N +TVLF V+R G ++Q + RP+ + T L++
Sbjct: 379 LLQYYGMTEMNYYTVLFGVSRALGVLAQLIWSRAL-GFPLERPKSMSTAGLEKLS 432
>2ifc_A Citrate synthase; oxaloacetate, EC 2.3.3.1, transferase; 1.70A
{Thermoplasma acidophilum} PDB: 2r9e_A* 2r26_A*
Length = 385
Score = 299 bits (766), Expect = 8e-82
Identities = 114/391 (29%), Positives = 196/391 (50%), Gaps = 15/391 (3%)
Query: 42 YDPAFSSTASCKSKITFIDGNNGILLYRGYPIEQ-LSEKSDFLEVCYLLLHGELANVSQQ 100
+++T IDGN GIL Y GY +E ++ + E+ YL L+G L +
Sbjct: 7 ISKGLEDVNIKWTRLTTIDGNKGILRYGGYSVEDIIASGAQDEEIQYLFLYGNLPTEQEL 66
Query: 101 KDFNDKISRHALLNENMSRFFMGFPSSAHPMAMLVSAVGALSSFYYSPSGVQDLEQCVNV 160
+ + + + + + + + P + +AM ++AV A+++ +D ++ V
Sbjct: 67 RKYKETVQKGYKIPDFVINAIRQLPRESDAVAMQMAAVAAMAASETKFKWNKDTDRDVAA 126
Query: 161 SLRMIAKISTIAAMIYKYSIGQPFVYPRSDLDYASNFLHMCFSVPCAEYQVNPLLARAMN 220
MI ++S I +Y++ + P P+ YA +FL+ F + ++ AMN
Sbjct: 127 --EMIGRMSAITVNVYRHIMNMPAELPKPSDSYAESFLNAAFGRKATKEEI-----DAMN 179
Query: 221 RIFILHADHEQNASTSTVRLAGSSGADPFACIAAGVACLGGRAHGGANEEALNMLMEIGS 280
IL+ DHE AST+ +A S+ +D ++ I A +A L G HGGA E A+ EI
Sbjct: 180 TALILYTDHEVPASTTAGLVAVSTLSDMYSGITAALAALKGPLHGGAAEAAIAQFDEIKD 239
Query: 281 LERIPHYIMRAKDKNDPFRIMGFGHRVYRNHDPRCRIMRETMYEVLEVTGRFNDPIAQVA 340
+ + N R+MGFGHRVY+ +DPR +I + ++ + ++A
Sbjct: 240 PAMVEKWFND-NIINGKKRLMGFGHRVYKTYDPRAKIFKGIAEKLSS-KKPEVHKVYEIA 297
Query: 341 IELERIALEDEYFIERKLYPNVDFYSGITLRALGFP--TNLFTVLFAVARTAGWVSQWTE 398
+LE + F + +YPN D++SGI ++GFP N++T LFA++R GW + + E
Sbjct: 298 TKLEDFG--IKAFGSKGIYPNTDYFSGIVYMSIGFPLRNNIYTALFALSRVTGWQAHFIE 355
Query: 399 MIVDPSRRIGRPRQLYTGALKRDYVPLEERE 429
+ + R+ RPR +Y G +R YVP+ ER+
Sbjct: 356 YVEEQQ-RLIRPRAVYVGPAERKYVPIAERK 385
>1vgm_A 378AA long hypothetical citrate synthase; open form, transferase;
2.00A {Sulfolobus tokodaii}
Length = 378
Score = 299 bits (766), Expect = 8e-82
Identities = 130/388 (33%), Positives = 195/388 (50%), Gaps = 13/388 (3%)
Query: 41 TYDPAFSSTASCKSKITFIDGNNGILLYRGYPIEQLSEKSDFLEVCYLLLHGELANVSQQ 100
+ + +T+IDG NGIL YRGY I L + + E+ +L+L+GEL N Q
Sbjct: 4 EVSRGLENVIIKTTGLTYIDGINGILRYRGYDINDLVNYASYEELIHLMLYGELPNRQQL 63
Query: 101 KDFNDKISRHALLNENMSRFFMGFPSSAHPMAMLVSAVGALSSFYYSPSGVQDLEQCVNV 160
I+ + E + P + + M+ +A G L+S Y ++
Sbjct: 64 NQIKGIINESFEVPEQVISTIFSMPRNCDAIGMMETAFGILASIYDPKWNRATNKELAV- 122
Query: 161 SLRMIAKISTIAAMIYKYSIGQPFVYPRSDLDYASNFLHMCFSVPCAEYQVNPLLARAMN 220
++IAK +TI A IY+ G P YA +FL F + ++ +AM+
Sbjct: 123 --QIIAKTATITANIYRAKEGLKPKIPEPSESYAESFLAATFGKKPTQEEI-----KAMD 175
Query: 221 RIFILHADHEQNASTSTVRLAGSSGADPFACIAAGVACLGGRAHGGANEEALNMLMEIGS 280
IL+ DHE AST+ +A S+ +D ++CI A +A L G HGGA EEA +EIGS
Sbjct: 176 ASLILYTDHEVPASTTAALVASSTLSDMYSCIVAALAALKGPLHGGAAEEAFKQFVEIGS 235
Query: 281 LERIPHYIMRAKDKNDPFRIMGFGHRVYRNHDPRCRIMRETMYEVLEVTGRFNDPIAQVA 340
+E + K R+MGFGHRVY+ +DPR +I + E ++A
Sbjct: 236 VENADKWFEEKIIKGKS-RLMGFGHRVYKTYDPRAKIFKTLAKSFAE-KNENVKKYYEIA 293
Query: 341 IELERIALEDEYFIERKLYPNVDFYSGITLRALGFPTNLFTVLFAVARTAGWVSQWTEMI 400
+E++ + F + +YPN DFYSGI ALGFP +FT LFA++R GW++ E +
Sbjct: 294 ERIEKLG--VDTFGSKHIYPNTDFYSGIVFYALGFPIYMFTSLFALSRVLGWLAHIIEYV 351
Query: 401 VDPSRRIGRPRQLYTGALKRDYVPLEER 428
+ R+ RPR LY G KR++ P+E R
Sbjct: 352 EEQH-RLIRPRALYIGPEKREFKPIELR 378
>1a59_A Citrate synthase; cold-activity; HET: COA CIT; 2.09A {Antarctic
bacterium ds2-3r} SCOP: a.103.1.1
Length = 378
Score = 291 bits (744), Expect = 3e-79
Identities = 111/389 (28%), Positives = 179/389 (46%), Gaps = 22/389 (5%)
Query: 41 TYDPAFSSTASCKSKITFIDGNNGILLYRGYPIEQLSEKSDFLEVCYLLLHGELANVSQQ 100
T + + + I+ ++ + LLYRGYP+++L+ K F +V YLL + EL N S+
Sbjct: 4 TIHKGLAGVTADVTAISKVNSDTNSLLYRGYPVQELAAKCSFEQVAYLLWNSELPNDSEL 63
Query: 101 KDFNDKISRHALLNENMSRFFMGFPSSAHPMAMLVSAVGALSSFYYSPSGVQDLEQCVNV 160
K F + H L+EN+ ++ HPM + +AV ++ + E +
Sbjct: 64 KAFVNFERSHRKLDENVKGAIDLLSTACHPMDVARTAVSV-LGANHARAQDSSPEANLEK 122
Query: 161 SLRMIAKISTIAAMIYKYSIGQPFVYPRSDLDYASNFLHMCFSVPCAEYQVNPLLARAMN 220
++ ++A ++ A + G+ + PR DLDY++NFL M F P + A N
Sbjct: 123 AMSLLATFPSVVAYDQRRRRGEELIEPREDLDYSANFLWMTFGEEA-----APEVVEAFN 177
Query: 221 RIFILHADHEQNASTSTVRLAGSSGADPFACIAAGVACLGGRAHGGANEEALNMLMEIGS 280
IL+A+H NAST T R+ S+ AD + + + L G HGGANE ++ EIG
Sbjct: 178 VSMILYAEHSFNASTFTARVITSTLADLHSAVTGAIGALKGPLHGGANEAVMHTFEEIGI 237
Query: 281 LER-------IPHYIMRAKDKNDPFRIMGFGHRVYRNHDPRCRIMRETMYEVLEVTGRFN 333
+ ++MGFGHRVY+N D R M+ + ++
Sbjct: 238 RKDESLDEAATRSKAWMVDALAQKKKVMGFGHRVYKNGDSRVPTMKSALDAMI--KHYDR 295
Query: 334 DPIAQVAIELERIALEDEYFIERKLYPNVDFYSGITLRALGFPTNLFTVLFAVARTAGWV 393
+ + LE E +++ PN+D+ +G T +GF T +FT LF AR GW
Sbjct: 296 PEMLGLYNGLEAAMEE-----AKQIKPNLDYPAGPTYNLMGFDTEMFTPLFIAARITGWT 350
Query: 394 SQWTEMIVDPSRRIGRPRQLYTGALKRDY 422
+ E + D + RP Y G +R
Sbjct: 351 AHIMEQVADN--ALIRPLSEYNGPEQRQV 377
>2c6x_A Citrate synthase 1; tricarboxylic acid cycle, transferase,
allosteric enzyme, enzyme thermostability; HET: COZ CIT;
3.4A {Bacillus subtilis}
Length = 363
Score = 289 bits (741), Expect = 6e-79
Identities = 112/370 (30%), Positives = 180/370 (48%), Gaps = 18/370 (4%)
Query: 52 CKSKITFIDGNNGILLYRGYPIEQLSEKSDFLEVCYLLLHGELANVSQQKDFNDKISRHA 111
++ I+ IDG G L+YRG+ + ++ F E YL+L G+L + + + F DK++
Sbjct: 11 VETSISHIDGEKGRLIYRGHHAKDIALNHSFEEAAYLILFGKLPSTEELQVFKDKLAAER 70
Query: 112 LLNENMSRFFMGFPSSAHPMAMLVSAVGALSSFYYSPSGVQDLEQCVNVSLRMIAKISTI 171
L E++ R P++ M++L + V AL Y+ ++R+IA +I
Sbjct: 71 NLPEHIERLIQSLPNNMDDMSVLRTVVSALGENTYTF------HPKTEEAIRLIAITPSI 124
Query: 172 AAMIYKYSIGQPFVYPRSDLDYASNFLHMCFSVPCAEYQVNPLLARAMNRIFILHADHEQ 231
A +++ G+ + P S + N+ +M +E + A+ IL +H
Sbjct: 125 IAYRKRWTRGEQAIAPSSQYGHVENYYYMLTGEQPSEAKKK-----ALETYMILATEHGM 179
Query: 232 NASTSTVRLAGSSGADPFACIAAGVACLGGRAHGGANEEALNMLMEIGSLERIPHYIMRA 291
NAST + R+ S+ +D + + A + + G HGGA ML +IG E Y+
Sbjct: 180 NASTFSARVTLSTESDLVSAVTAALGTMKGPLHGGAPSAVTKMLEDIGEKEHAEAYLKEK 239
Query: 292 KDKNDPFRIMGFGHRVYRNHDPRCRIMRETMYEVLEVTGRFNDPIAQVAIELERIALEDE 351
+K + R+MGFGHRVY+ DPR +R+ EV G D + +E E I L +
Sbjct: 240 LEKGE--RLMGFGHRVYKTKDPRAEALRQKAEEVA---GNDRDLDLALHVEAEAIRLLEI 294
Query: 352 YFIERKLYPNVDFYSGITLRALGFPTNLFTVLFAVARTAGWVSQWTEMIVDPSRRIGRPR 411
Y RKLY NV+FY+ +RA+ F LFT F+ +R GW + E + I RP
Sbjct: 295 YKPGRKLYTNVEFYAAAVMRAIDFDDELFTPTFSASRMVGWCAHVLEQAENN--MIFRPS 352
Query: 412 QLYTGALKRD 421
YTGA+ +
Sbjct: 353 AQYTGAIPEE 362
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 39.5 bits (92), Expect = 0.002
Identities = 67/440 (15%), Positives = 132/440 (30%), Gaps = 162/440 (36%)
Query: 46 FSSTASCKSKITFIDGNNGI-------L--LYRGYP------IEQLSEK-----SDFLEV 85
F + +++ I G G L LY+ Y I+ +E L+
Sbjct: 146 FRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDA 205
Query: 86 CYLLLHG-----ELANVSQQKDFND--------------------KISRHAL-LN--ENM 117
+ G L N S D D ++ L E +
Sbjct: 206 EKVFTQGLNILEWLENPSNTPD-KDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGE-L 263
Query: 118 SRFFMGFPSSAHP----MAMLVSAVGALSSFYYSPSGVQDLEQCVNVSLRMIAKISTIAA 173
+ G ++ H A+ ++ + SF+ V ++ ++
Sbjct: 264 RSYLKG--ATGHSQGLVTAVAIAETDSWESFF----------VSVRKAITVL-------- 303
Query: 174 MIYKYSIG----QPFVYPRSDL------DYASNFLHMCFSVPCAEYQVNPLLA-RAMNRI 222
+ IG + YP + L D S+ E +P+L+ + +
Sbjct: 304 ----FFIGVRCYE--AYPNTSLPPSILED----------SLENNEGVPSPMLSISNLTQE 347
Query: 223 FIL-HADHEQNA---STSTVRLAGSSGADPFACIAAG-VACLGGRAHGGANEEALNMLME 277
+ + + N+ + V ++ +GA + +G L +G LN+
Sbjct: 348 QVQDYVNK-TNSHLPAGKQVEISLVNGAKNL--VVSGPPQSL----YG------LNL--- 391
Query: 278 IGSLERIPHYIMRAKDKND----PF--RIMGFGHRVYRNHDPRCRIMRETMYEVLEVTGR 331
+L + +A D PF R + F +R L V
Sbjct: 392 --TLRKA-----KAPSGLDQSRIPFSERKLKFSNR------------------FLPVASP 426
Query: 332 FNDPIAQVAIE--LERIALEDEYFIERKL-YPNVDFYSGITLRALGFPTNLFTVLF-AVA 387
F+ + A + + + + F + + P D + G LR L ++ + +
Sbjct: 427 FHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLS--GSISERIVDCII 484
Query: 388 RTAGWVSQWTEMIVDPSRRI 407
R V +W + I
Sbjct: 485 RLP--V-KWETTTQFKATHI 501
Score = 37.2 bits (86), Expect = 0.006
Identities = 56/385 (14%), Positives = 92/385 (23%), Gaps = 161/385 (41%)
Query: 72 PIEQLSEKSDFLEVCYLLLHGELANVSQQKDFNDKISRHALLNENMSRFFMGFPSSAHPM 131
P+ LS S LE L+ SQ ++ +F P
Sbjct: 8 PL-TLSHGS--LEHVLLVPTASFFIASQLQE----------------QFNKILPE----- 43
Query: 132 AMLVSAVGALSSFYYSPSGVQDLEQCVNVSLRMIAKISTIAAMIYKYSIGQPFVYPRSDL 191
+ D E P +
Sbjct: 44 --------------PTEGFAADDE-------------------------------PTTPA 58
Query: 192 DYASNFL-HMCFSV---PCAEY-QVNPLLARAMNRIFILHAD-HEQNASTSTVRLAGSSG 245
+ FL ++ V ++ QV L ++ D H +L +
Sbjct: 59 ELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIH-----ALAAKLLQEND 113
Query: 246 ADPFAC---IAAGV-AC-LGGRAHGGANEEALNMLMEIGSLERIPHYIMRAKDKNDPFRI 300
I + A + R + AL RA + + ++
Sbjct: 114 TTLVKTKELIKNYITARIMAKRPFDKKSNSAL----------------FRAVGEGN-AQL 156
Query: 301 M----GFGHRVYRNHDPRC-RIMRE--TMYEVLEVTGRFNDPIAQVAIELERIALEDEYF 353
+ G G+ D +R+ Y VL V D I A L +
Sbjct: 157 VAIFGGQGN----TDD--YFEELRDLYQTYHVL-VG----DLIKFSAETLSELIRTTLDA 205
Query: 354 IERKLY----------------PNVDFYSGITLRALGFPTNLFTVL----FAVA-RTAGW 392
K++ P+ D+ I + P L V+ + V + G
Sbjct: 206 E--KVFTQGLNILEWLENPSNTPDKDYLLSI---PISCP--LIGVIQLAHYVVTAKLLG- 257
Query: 393 VSQWTEMIVDPSRRIGRPRQLYTGA 417
P G R GA
Sbjct: 258 --------FTP----GELRSYLKGA 270
>2d1c_A Isocitrate dehydrogenase; structural genomics, NPPSFA, national
project on protein structural and functional analyses;
HET: NAP CIT; 1.80A {Thermus thermophilus HB8}
Length = 496
Score = 26.9 bits (59), Expect = 8.1
Identities = 17/126 (13%), Positives = 36/126 (28%), Gaps = 18/126 (14%)
Query: 174 MIYKYSIGQPFVYPRSDLDYASNFLHMCF----SVPCAEYQVNPLLARAMNRIFILHADH 229
++ + + V + D S+ P A + A++
Sbjct: 230 LVKRPEQFEVIVTTNMNGDILSDLTSGLIGGLGFAPSANIGNEVAIFEAVHG-------- 281
Query: 230 EQNASTSTVRLAGSSGADPFACIAAGVACLGGRAHGGANEEALNMLMEIGSLERIPHYIM 289
S + AG + +P A + + V L + N L+ R+ +
Sbjct: 282 ------SAPKYAGKNVINPTAVLLSAVMMLRYLEEFATADLIENALLYTLEEGRVLTGDV 335
Query: 290 RAKDKN 295
D+
Sbjct: 336 VGYDRG 341
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.323 0.138 0.412
Gapped
Lambda K H
0.267 0.0543 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 3,797,836
Number of extensions: 178607
Number of successful extensions: 473
Number of sequences better than 10.0: 1
Number of HSP's gapped: 407
Number of HSP's successfully gapped: 19
Length of query: 429
Length of database: 5,693,230
Length adjustment: 95
Effective length of query: 334
Effective length of database: 3,390,050
Effective search space: 1132276700
Effective search space used: 1132276700
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 58 (26.5 bits)