BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780355|ref|YP_003064768.1| type II citrate synthase [Candidatus Liberibacter asiaticus str. psy62] (429 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780355|ref|YP_003064768.1| type II citrate synthase [Candidatus Liberibacter asiaticus str. psy62] Length = 429 Score = 894 bits (2310), Expect = 0.0, Method: Compositional matrix adjust. Identities = 429/429 (100%), Positives = 429/429 (100%) Query: 1 MTDKFAKLHLGHEEIDLPIKEGSLGSSVLDISFLHKNGIFTYDPAFSSTASCKSKITFID 60 MTDKFAKLHLGHEEIDLPIKEGSLGSSVLDISFLHKNGIFTYDPAFSSTASCKSKITFID Sbjct: 1 MTDKFAKLHLGHEEIDLPIKEGSLGSSVLDISFLHKNGIFTYDPAFSSTASCKSKITFID 60 Query: 61 GNNGILLYRGYPIEQLSEKSDFLEVCYLLLHGELANVSQQKDFNDKISRHALLNENMSRF 120 GNNGILLYRGYPIEQLSEKSDFLEVCYLLLHGELANVSQQKDFNDKISRHALLNENMSRF Sbjct: 61 GNNGILLYRGYPIEQLSEKSDFLEVCYLLLHGELANVSQQKDFNDKISRHALLNENMSRF 120 Query: 121 FMGFPSSAHPMAMLVSAVGALSSFYYSPSGVQDLEQCVNVSLRMIAKISTIAAMIYKYSI 180 FMGFPSSAHPMAMLVSAVGALSSFYYSPSGVQDLEQCVNVSLRMIAKISTIAAMIYKYSI Sbjct: 121 FMGFPSSAHPMAMLVSAVGALSSFYYSPSGVQDLEQCVNVSLRMIAKISTIAAMIYKYSI 180 Query: 181 GQPFVYPRSDLDYASNFLHMCFSVPCAEYQVNPLLARAMNRIFILHADHEQNASTSTVRL 240 GQPFVYPRSDLDYASNFLHMCFSVPCAEYQVNPLLARAMNRIFILHADHEQNASTSTVRL Sbjct: 181 GQPFVYPRSDLDYASNFLHMCFSVPCAEYQVNPLLARAMNRIFILHADHEQNASTSTVRL 240 Query: 241 AGSSGADPFACIAAGVACLGGRAHGGANEEALNMLMEIGSLERIPHYIMRAKDKNDPFRI 300 AGSSGADPFACIAAGVACLGGRAHGGANEEALNMLMEIGSLERIPHYIMRAKDKNDPFRI Sbjct: 241 AGSSGADPFACIAAGVACLGGRAHGGANEEALNMLMEIGSLERIPHYIMRAKDKNDPFRI 300 Query: 301 MGFGHRVYRNHDPRCRIMRETMYEVLEVTGRFNDPIAQVAIELERIALEDEYFIERKLYP 360 MGFGHRVYRNHDPRCRIMRETMYEVLEVTGRFNDPIAQVAIELERIALEDEYFIERKLYP Sbjct: 301 MGFGHRVYRNHDPRCRIMRETMYEVLEVTGRFNDPIAQVAIELERIALEDEYFIERKLYP 360 Query: 361 NVDFYSGITLRALGFPTNLFTVLFAVARTAGWVSQWTEMIVDPSRRIGRPRQLYTGALKR 420 NVDFYSGITLRALGFPTNLFTVLFAVARTAGWVSQWTEMIVDPSRRIGRPRQLYTGALKR Sbjct: 361 NVDFYSGITLRALGFPTNLFTVLFAVARTAGWVSQWTEMIVDPSRRIGRPRQLYTGALKR 420 Query: 421 DYVPLEERE 429 DYVPLEERE Sbjct: 421 DYVPLEERE 429 >gi|254780785|ref|YP_003065198.1| 30S ribosomal protein S15 [Candidatus Liberibacter asiaticus str. psy62] Length = 89 Score = 25.4 bits (54), Expect = 2.1, Method: Composition-based stats. Identities = 16/39 (41%), Positives = 18/39 (46%) Query: 319 RETMYEVLEVTGRFNDPIAQVAIELERIALEDEYFIERK 357 RE M E G P QVA+ ERIA E+F K Sbjct: 9 RELMKEYAVSPGDTGSPEVQVAVCTERIANLTEHFKSAK 47 >gi|254781096|ref|YP_003065509.1| UDP-N-acetylmuramate--L-alanine ligase [Candidatus Liberibacter asiaticus str. psy62] Length = 474 Score = 24.6 bits (52), Expect = 3.0, Method: Compositional matrix adjust. Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 1/31 (3%) Query: 202 FSVPCAEY-QVNPLLARAMNRIFILHADHEQ 231 F+V C ++ +V L+AR NR I + H Q Sbjct: 213 FAVVCMDHPEVRSLIARIQNRKIITYGRHPQ 243 >gi|254780403|ref|YP_003064816.1| hypothetical protein CLIBASIA_01440 [Candidatus Liberibacter asiaticus str. psy62] Length = 80 Score = 24.6 bits (52), Expect = 3.2, Method: Composition-based stats. Identities = 9/18 (50%), Positives = 14/18 (77%) Query: 84 EVCYLLLHGELANVSQQK 101 +V YL+ GEL N++Q+K Sbjct: 9 QVLYLVFGGELENITQKK 26 >gi|254781225|ref|YP_003065638.1| P4 family phage/plasmid primase [Candidatus Liberibacter asiaticus str. psy62] Length = 789 Score = 24.3 bits (51), Expect = 3.8, Method: Compositional matrix adjust. Identities = 20/86 (23%), Positives = 35/86 (40%), Gaps = 11/86 (12%) Query: 169 STIAAMIYKYSIGQPFVYPRSDLDYASNFLHMCFSVPCAEYQVNPLLARAMNRIFILHAD 228 ST+ +I KY+ G +V D N P + NP L R M ++ ++ Sbjct: 515 STLMNLI-KYAFGNQYVINAEASDIMQN-------RPPEAGKANPSLIRLMGSRIVIISE 566 Query: 229 HEQNASTSTVRLAGSSGADPFACIAA 254 +N + ++ +G D C+ A Sbjct: 567 TNENDEINAAKIKQMTGGD---CMTA 589 >gi|254781123|ref|YP_003065536.1| putative ABC transporter, ATP-binding protein [Candidatus Liberibacter asiaticus str. psy62] Length = 610 Score = 23.9 bits (50), Expect = 5.2, Method: Compositional matrix adjust. Identities = 13/40 (32%), Positives = 19/40 (47%) Query: 78 EKSDFLEVCYLLLHGELANVSQQKDFNDKISRHALLNENM 117 E DFLE L G + VS +DF D+ + +N+ Sbjct: 440 ETLDFLERTITQLQGTILIVSHDRDFLDRTVTSTIAAQNI 479 >gi|254780143|ref|YP_003064556.1| DNA-directed RNA polymerase subunit beta [Candidatus Liberibacter asiaticus str. psy62] Length = 1386 Score = 23.5 bits (49), Expect = 7.0, Method: Compositional matrix adjust. Identities = 13/49 (26%), Positives = 25/49 (51%), Gaps = 3/49 (6%) Query: 266 GANEEALNMLMEIGSLERIPHYIMRAKDKNDPFR---IMGFGHRVYRNH 311 GA+EEA+N ++ + L+ I+ +PF +G+ + + NH Sbjct: 1213 GADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNH 1261 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.323 0.138 0.412 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 270,750 Number of Sequences: 1233 Number of extensions: 11007 Number of successful extensions: 29 Number of sequences better than 100.0: 10 Number of HSP's better than 100.0 without gapping: 5 Number of HSP's successfully gapped in prelim test: 5 Number of HSP's that attempted gapping in prelim test: 23 Number of HSP's gapped (non-prelim): 11 length of query: 429 length of database: 328,796 effective HSP length: 76 effective length of query: 353 effective length of database: 235,088 effective search space: 82986064 effective search space used: 82986064 T: 11 A: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 40 (20.0 bits)