BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780355|ref|YP_003064768.1| type II citrate synthase
[Candidatus Liberibacter asiaticus str. psy62]
         (429 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780355|ref|YP_003064768.1| type II citrate synthase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 429

 Score =  894 bits (2310), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 429/429 (100%), Positives = 429/429 (100%)

Query: 1   MTDKFAKLHLGHEEIDLPIKEGSLGSSVLDISFLHKNGIFTYDPAFSSTASCKSKITFID 60
           MTDKFAKLHLGHEEIDLPIKEGSLGSSVLDISFLHKNGIFTYDPAFSSTASCKSKITFID
Sbjct: 1   MTDKFAKLHLGHEEIDLPIKEGSLGSSVLDISFLHKNGIFTYDPAFSSTASCKSKITFID 60

Query: 61  GNNGILLYRGYPIEQLSEKSDFLEVCYLLLHGELANVSQQKDFNDKISRHALLNENMSRF 120
           GNNGILLYRGYPIEQLSEKSDFLEVCYLLLHGELANVSQQKDFNDKISRHALLNENMSRF
Sbjct: 61  GNNGILLYRGYPIEQLSEKSDFLEVCYLLLHGELANVSQQKDFNDKISRHALLNENMSRF 120

Query: 121 FMGFPSSAHPMAMLVSAVGALSSFYYSPSGVQDLEQCVNVSLRMIAKISTIAAMIYKYSI 180
           FMGFPSSAHPMAMLVSAVGALSSFYYSPSGVQDLEQCVNVSLRMIAKISTIAAMIYKYSI
Sbjct: 121 FMGFPSSAHPMAMLVSAVGALSSFYYSPSGVQDLEQCVNVSLRMIAKISTIAAMIYKYSI 180

Query: 181 GQPFVYPRSDLDYASNFLHMCFSVPCAEYQVNPLLARAMNRIFILHADHEQNASTSTVRL 240
           GQPFVYPRSDLDYASNFLHMCFSVPCAEYQVNPLLARAMNRIFILHADHEQNASTSTVRL
Sbjct: 181 GQPFVYPRSDLDYASNFLHMCFSVPCAEYQVNPLLARAMNRIFILHADHEQNASTSTVRL 240

Query: 241 AGSSGADPFACIAAGVACLGGRAHGGANEEALNMLMEIGSLERIPHYIMRAKDKNDPFRI 300
           AGSSGADPFACIAAGVACLGGRAHGGANEEALNMLMEIGSLERIPHYIMRAKDKNDPFRI
Sbjct: 241 AGSSGADPFACIAAGVACLGGRAHGGANEEALNMLMEIGSLERIPHYIMRAKDKNDPFRI 300

Query: 301 MGFGHRVYRNHDPRCRIMRETMYEVLEVTGRFNDPIAQVAIELERIALEDEYFIERKLYP 360
           MGFGHRVYRNHDPRCRIMRETMYEVLEVTGRFNDPIAQVAIELERIALEDEYFIERKLYP
Sbjct: 301 MGFGHRVYRNHDPRCRIMRETMYEVLEVTGRFNDPIAQVAIELERIALEDEYFIERKLYP 360

Query: 361 NVDFYSGITLRALGFPTNLFTVLFAVARTAGWVSQWTEMIVDPSRRIGRPRQLYTGALKR 420
           NVDFYSGITLRALGFPTNLFTVLFAVARTAGWVSQWTEMIVDPSRRIGRPRQLYTGALKR
Sbjct: 361 NVDFYSGITLRALGFPTNLFTVLFAVARTAGWVSQWTEMIVDPSRRIGRPRQLYTGALKR 420

Query: 421 DYVPLEERE 429
           DYVPLEERE
Sbjct: 421 DYVPLEERE 429


>gi|254780785|ref|YP_003065198.1| 30S ribosomal protein S15 [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 89

 Score = 25.4 bits (54), Expect = 2.1,   Method: Composition-based stats.
 Identities = 16/39 (41%), Positives = 18/39 (46%)

Query: 319 RETMYEVLEVTGRFNDPIAQVAIELERIALEDEYFIERK 357
           RE M E     G    P  QVA+  ERIA   E+F   K
Sbjct: 9   RELMKEYAVSPGDTGSPEVQVAVCTERIANLTEHFKSAK 47


>gi|254781096|ref|YP_003065509.1| UDP-N-acetylmuramate--L-alanine ligase [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 474

 Score = 24.6 bits (52), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 1/31 (3%)

Query: 202 FSVPCAEY-QVNPLLARAMNRIFILHADHEQ 231
           F+V C ++ +V  L+AR  NR  I +  H Q
Sbjct: 213 FAVVCMDHPEVRSLIARIQNRKIITYGRHPQ 243


>gi|254780403|ref|YP_003064816.1| hypothetical protein CLIBASIA_01440 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 80

 Score = 24.6 bits (52), Expect = 3.2,   Method: Composition-based stats.
 Identities = 9/18 (50%), Positives = 14/18 (77%)

Query: 84  EVCYLLLHGELANVSQQK 101
           +V YL+  GEL N++Q+K
Sbjct: 9   QVLYLVFGGELENITQKK 26


>gi|254781225|ref|YP_003065638.1| P4 family phage/plasmid primase [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 789

 Score = 24.3 bits (51), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 20/86 (23%), Positives = 35/86 (40%), Gaps = 11/86 (12%)

Query: 169 STIAAMIYKYSIGQPFVYPRSDLDYASNFLHMCFSVPCAEYQVNPLLARAMNRIFILHAD 228
           ST+  +I KY+ G  +V      D   N        P    + NP L R M    ++ ++
Sbjct: 515 STLMNLI-KYAFGNQYVINAEASDIMQN-------RPPEAGKANPSLIRLMGSRIVIISE 566

Query: 229 HEQNASTSTVRLAGSSGADPFACIAA 254
             +N   +  ++   +G D   C+ A
Sbjct: 567 TNENDEINAAKIKQMTGGD---CMTA 589


>gi|254781123|ref|YP_003065536.1| putative ABC transporter, ATP-binding protein [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 610

 Score = 23.9 bits (50), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 13/40 (32%), Positives = 19/40 (47%)

Query: 78  EKSDFLEVCYLLLHGELANVSQQKDFNDKISRHALLNENM 117
           E  DFLE     L G +  VS  +DF D+     +  +N+
Sbjct: 440 ETLDFLERTITQLQGTILIVSHDRDFLDRTVTSTIAAQNI 479


>gi|254780143|ref|YP_003064556.1| DNA-directed RNA polymerase subunit beta [Candidatus Liberibacter
            asiaticus str. psy62]
          Length = 1386

 Score = 23.5 bits (49), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 13/49 (26%), Positives = 25/49 (51%), Gaps = 3/49 (6%)

Query: 266  GANEEALNMLMEIGSLERIPHYIMRAKDKNDPFR---IMGFGHRVYRNH 311
            GA+EEA+N ++ +  L+     I+      +PF     +G+ + +  NH
Sbjct: 1213 GADEEAINSMLRMADLDESGQSILYDGLTGEPFDRPVTVGYIYMLKLNH 1261


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.323    0.138    0.412 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 270,750
Number of Sequences: 1233
Number of extensions: 11007
Number of successful extensions: 29
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 23
Number of HSP's gapped (non-prelim): 11
length of query: 429
length of database: 328,796
effective HSP length: 76
effective length of query: 353
effective length of database: 235,088
effective search space: 82986064
effective search space used: 82986064
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 40 (20.0 bits)