RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254780356|ref|YP_003064769.1| hypothetical protein
CLIBASIA_01205 [Candidatus Liberibacter asiaticus str. psy62]
         (120 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 29.5 bits (66), Expect = 0.18
 Identities = 24/147 (16%), Positives = 47/147 (31%), Gaps = 64/147 (43%)

Query: 3   QKK---------ISNPLCNIIQHVKYLI----QLEQEYGG---FF----LFIPVF----- 37
           ++K         +++P      H   L+     + ++       F    + IPV+     
Sbjct: 411 ERKLKFSNRFLPVASPF-----HSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDG 465

Query: 38  --LAFGAIFWFVYSPEIPIWGIVLSILIIAIISLRIRY----SHP--HILLI-------V 82
             L        V S  I         ++  II L +++         HIL         +
Sbjct: 466 SDLR-------VLSGSI------SERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGL 512

Query: 83  KTLTYFL-----TRMILA-AIEITRNP 103
             LT+        R+I+A  ++I  + 
Sbjct: 513 GVLTHRNKDGTGVRVIVAGTLDINPDD 539


>2jyn_A UPF0368 protein YPL225W; novel fold, YST0336, YT51, ontario centre
           for structural proteomics, OCSP, PSI, protein structure
           initiative; NMR {Saccharomyces cerevisiae}
          Length = 146

 Score = 26.2 bits (58), Expect = 1.6
 Identities = 8/17 (47%), Positives = 10/17 (58%)

Query: 86  TYFLTRMILAAIEITRN 102
           T F+ R+   A EI RN
Sbjct: 118 TCFVVRLQFYAFEIARN 134


>2v9k_A Uncharacterized protein FLJ32312; pseudouridine synthase, PUS10,
           RNA modification, thump domain, lyase; HET: EPE; 2.0A
           {Homo sapiens}
          Length = 530

 Score = 24.1 bits (52), Expect = 7.6
 Identities = 13/124 (10%), Positives = 35/124 (28%), Gaps = 24/124 (19%)

Query: 6   ISNPLCNIIQHVKYLIQLEQEYGGFFLFIPVFLAFGAIFWFVYSPEIPIWGIVLSILIIA 65
           +S P    ++     + ++QE G   L                   + +       +   
Sbjct: 147 VSFPPQLSVREHAAWLLVKQEMGKQSLS------------LGRDDIVQL-KEAYKWITHP 193

Query: 66  IIS--LRIRYSHPHILLIVKTLTY--------FLTRMILAAIEITRNPTTILS-QSITTN 114
           + S  L +      +  +     +        FL  +     +  +N  ++ +  ++   
Sbjct: 194 LFSEELGVPIDGKSLFEVSVVFAHPETVEDCHFLAAICPDCFKPAKNKQSVFTRMAVMKA 253

Query: 115 LRGI 118
           L  I
Sbjct: 254 LNKI 257


>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon
           merolae}
          Length = 632

 Score = 24.1 bits (51), Expect = 8.1
 Identities = 13/81 (16%), Positives = 32/81 (39%), Gaps = 4/81 (4%)

Query: 14  IQHVKY-LIQLEQEYGGFFLFIPVFLAFGAIFWFV---YSPEIPIWGIVLSILIIAIISL 69
           ++ ++  + +L   + G+ L++   +A   +  F     S E    G+     I++    
Sbjct: 35  LEELRMKISRLAGRFAGYILYVVSGVALCLLSTFWCAVLSTEAEGSGLPQMKSILSGFYD 94

Query: 70  RIRYSHPHILLIVKTLTYFLT 90
           ++R +    +L  K L     
Sbjct: 95  KMRSALELRVLFAKALGLICA 115


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.333    0.147    0.446 

Gapped
Lambda     K      H
   0.267   0.0568    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 1,033,754
Number of extensions: 43357
Number of successful extensions: 152
Number of sequences better than 10.0: 1
Number of HSP's gapped: 152
Number of HSP's successfully gapped: 33
Length of query: 120
Length of database: 5,693,230
Length adjustment: 81
Effective length of query: 39
Effective length of database: 3,729,466
Effective search space: 145449174
Effective search space used: 145449174
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 50 (23.4 bits)