BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780356|ref|YP_003064769.1| hypothetical protein
CLIBASIA_01205 [Candidatus Liberibacter asiaticus str. psy62]
         (120 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780356|ref|YP_003064769.1| hypothetical protein CLIBASIA_01205 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 120

 Score =  238 bits (606), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 120/120 (100%), Positives = 120/120 (100%)

Query: 1   MLQKKISNPLCNIIQHVKYLIQLEQEYGGFFLFIPVFLAFGAIFWFVYSPEIPIWGIVLS 60
           MLQKKISNPLCNIIQHVKYLIQLEQEYGGFFLFIPVFLAFGAIFWFVYSPEIPIWGIVLS
Sbjct: 1   MLQKKISNPLCNIIQHVKYLIQLEQEYGGFFLFIPVFLAFGAIFWFVYSPEIPIWGIVLS 60

Query: 61  ILIIAIISLRIRYSHPHILLIVKTLTYFLTRMILAAIEITRNPTTILSQSITTNLRGIVK 120
           ILIIAIISLRIRYSHPHILLIVKTLTYFLTRMILAAIEITRNPTTILSQSITTNLRGIVK
Sbjct: 61  ILIIAIISLRIRYSHPHILLIVKTLTYFLTRMILAAIEITRNPTTILSQSITTNLRGIVK 120


>gi|254780419|ref|YP_003064832.1| aspartyl-tRNA synthetase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 622

 Score = 23.9 bits (50), Expect = 0.94,   Method: Composition-based stats.
 Identities = 10/23 (43%), Positives = 13/23 (56%)

Query: 96  AIEITRNPTTILSQSITTNLRGI 118
            + I  NP  IL  S+TT LR +
Sbjct: 588 GLRIVENPKKILKISVTTILRNV 610


>gi|254780988|ref|YP_003065401.1| hypothetical protein CLIBASIA_04445 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 151

 Score = 23.5 bits (49), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 11/44 (25%), Positives = 19/44 (43%)

Query: 14  IQHVKYLIQLEQEYGGFFLFIPVFLAFGAIFWFVYSPEIPIWGI 57
           +Q+     Q E+E      F  +   F  +FW +  P +  WG+
Sbjct: 68  LQNQANEDQFERESKAMIFFNALIRPFTTLFWIILYPLLIWWGV 111


>gi|254780357|ref|YP_003064770.1| hypothetical protein CLIBASIA_01210 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 394

 Score = 21.6 bits (44), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 11/31 (35%), Positives = 19/31 (61%)

Query: 39  AFGAIFWFVYSPEIPIWGIVLSILIIAIISL 69
           A  +IF   +   IP++G++ +IL I I+S 
Sbjct: 94  ASASIFLIKHFHCIPVYGLIANILAIPILSF 124


>gi|254780860|ref|YP_003065273.1| NADH dehydrogenase subunit H [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 348

 Score = 21.2 bits (43), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 4/46 (8%)

Query: 79  LLIVKTLTYFLTRMILAAIEITRNPTTI----LSQSITTNLRGIVK 120
           LLI       + R + AA+++ R P  +    L QS    L+ + K
Sbjct: 26  LLIFIAYVLLMDRKVWAAVQLRRGPNVVGPWGLLQSFADFLKFVFK 71


>gi|254780701|ref|YP_003065114.1| putative two-component sensor histidine kinase transcriptional
          regulatory protein [Candidatus Liberibacter asiaticus
          str. psy62]
          Length = 495

 Score = 21.2 bits (43), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 8/25 (32%), Positives = 14/25 (56%)

Query: 45 WFVYSPEIPIWGIVLSILIIAIISL 69
          WF  +P  P+W ++   +  A +SL
Sbjct: 65 WFTQNPIFPMWSLITLAVYAANLSL 89


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.333    0.147    0.446 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,673
Number of Sequences: 1233
Number of extensions: 2637
Number of successful extensions: 14
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 5
Number of HSP's gapped (non-prelim): 10
length of query: 120
length of database: 328,796
effective HSP length: 64
effective length of query: 56
effective length of database: 249,884
effective search space: 13993504
effective search space used: 13993504
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 33 (17.3 bits)