HHsearch alignment for GI: 254780357 and conserved domain: PRK11539
>PRK11539 hypothetical protein; Provisional.
Probab=99.89 E-value=5.8e-20 Score=133.68 Aligned_cols=236 Identities=12% Similarity=0.128 Sum_probs=141.6
Q ss_pred ECCCCCCHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 02668855589998888820485567152135879999999999999861264113577764211456788888889999
Q gi|254780357|r 4 ITKKYDPFPAETTIEGIARLSPPSGPAFPGLFDFNFSSYYKGISAIGYFYSIPKMIYSSESHNTWTWKKISSIKQSFLNE 83 (394)
Q Consensus 4 ~~~~~~p~~~g~~i~~~v~L~~P~~p~~PGlFD~SF~asF~aVaaigff~~~p~~~~~~~~~~~~~~~~l~~Lr~~i~~~ 83 (394)
T Consensus 297 ~~r~~~~~~~l~~a~~~iLl~~P~~~~~~g-----F~LSf~Av~~li~~~~~~p~~~~--~~----~~~~~~~~~----~ 361 (754)
T PRK11539 297 SGRQWSGWQVWLCCLAAILLSDPLAVLSQS-----LWLSALAVAALIFWYQWFPLPER--FL----PGWLRAVLR----L 361 (754)
T ss_pred HCCCCCHHHHHHHHHHHHHHHCHHHHHCHH-----HHHHHHHHHHHHHHHHHCCCCHH--HH----HHHHHHHHH----H
T ss_conf 386477899999999999995879996625-----79999999999999740433111--10----236899999----9
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHHH
Q ss_conf 999965555888999999860102327883888999999999999999999997516---41689999999999999999
Q gi|254780357|r 84 IRANIGTYGSASASIFLIKHFHCIPVYGLIANILAIPILSFVVIPAGLIAILLMILS---LDNIPFGVMAWGLDIIIHIA 160 (394)
Q Consensus 84 I~a~ls~~~~~a~~p~~~~~F~~~~~~~~~aNl~avP~~~~~v~p~~~~~~~l~p~g---l~~~~l~~mg~gi~~il~vA 160 (394)
T Consensus 362 l--~~q~~~~l~llPl~l~~F~~iSl~s~laNL~aVPlvs~vvvPl~ll~l~~~~~~~~~l~~~~~~l~~~~l~~~~~~l 439 (754)
T PRK11539 362 L--HLQLGITLLLMPLQIVLFHGISLTSIPANLWAVPLVTFITVPLILAAMVLHLSGPFILEEGLWFLADRSLALLFWPL 439 (754)
T ss_pred H--HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9--99999999999999999387527899999999999999999999999999987499999999999999999999998
Q ss_pred HHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHHHHHH-HCCCCCCCEE----EECCCCCEEEE
Q ss_conf 997137876223557722799999999999971463-78987999999999985-2346777348----98699968799
Q gi|254780357|r 161 HRISVAHNEFCIGRIPETSFVTIVVEFLLMVFCKTN-IRHIGSIMIGITIIILF-TFPYSFSPDL----LISEKGNLVAL 234 (394)
Q Consensus 161 ~~va~~~ga~~~~~~p~~~l~l~~~g~l~l~l~~~~-~R~~g~~~~~~~~~~l~-~~~~~~~Pdi----lIs~dG~lVav 234 (394)
T Consensus 440 ~---~l~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~r~~~~~~~~~~lll~~~~~~~~~~~~~~v~~LDVGQG~avlI 514 (754)
T PRK11539 440 N---SLPEGWIN--IGERWQWLTFSPWLALIIWRFNWWRTYPAMCVALGLLMCLPLWQRPDPYEWRVDMLDVGQGLAMVI 514 (754)
T ss_pred H---HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCEEEEE
T ss_conf 7---60133422--215889999999999999999999999999999999999997166788760899997278518999
Q ss_pred ECCCEEEEE-CC------CCCCHHHHHHHHHCCC
Q ss_conf 748804663-47------7441379889875176
Q gi|254780357|r 235 VDKNTLISN-YS------NPPSFIFSQWKSALIT 261 (394)
Q Consensus 235 ~~~~g~~~~-~~------r~~~F~~~~W~~~~g~ 261 (394)
T Consensus 515 ~~~~~~~L~DtG~~~~~~~~g~~vi~P~L~~~Gi 548 (754)
T PRK11539 515 ERNGKAILYDTGNAWPEGDSAQQVIIPWLRWHNL 548 (754)
T ss_pred EECCEEEEEECCCCCCCCCCHHHHHHHHHHHCCC
T ss_conf 9899789995799888887237788999996799