HHsearch alignment for GI: 254780357 and conserved domain: TIGR00361
>TIGR00361 ComEC_Rec2 DNA internalization-related competence protein ComEC/Rec2; InterPro: IPR004797 This is the DNA internalisation-related competence protein ComEC/Rec2 family. Apparent orthologs are found in 5 species so far (Haemophilus influenzae, Escherichia coli, Bacillus subtilis, Neisseria gonorrhoeae, Streptococcus pneumoniae), of which all but E. coli are model systems for the study of competence for natural transformation. This protein is a predicted multiple membrane-spanning protein likely to be involved in DNA internalisation.; GO: 0030420 establishment of competence for transformation, 0016021 integral to membrane.
Probab=98.89 E-value=8.7e-08 Score=63.08 Aligned_cols=121 Identities=19% Similarity=0.198 Sum_probs=90.1
Q ss_pred ECCCCCCHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC--CCCCHHHHHHHHHHHHHH
Q ss_conf 026688555899988888204855671521358799999999999998612641135777--642114567888888899
Q gi|254780357|r 4 ITKKYDPFPAETTIEGIARLSPPSGPAFPGLFDFNFSSYYKGISAIGYFYSIPKMIYSSE--SHNTWTWKKISSIKQSFL 81 (394)
Q Consensus 4 ~~~~~~p~~~g~~i~~~v~L~~P~~p~~PGlFD~SF~asF~aVaaigff~~~p~~~~~~~--~~~~~~~~~l~~Lr~~i~ 81 (394)
T Consensus 243 ~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~-----~~l~~~~~~~l~~~~~~~~~~~~~~~~~p~~p~~~~~~~l----- 312 (731)
T TIGR00361 243 VGRRWSGWDAWCLCLGALLLFDPLHLLSAG-----FWLSCAAVGALLLWYSWFPCPLWQLGNRPFSPKLRWVFSL----- 312 (731)
T ss_pred HHCCCCCHHHHHHHHHHHHHHCCHHHHHHH-----HHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCHHHHHHHHH-----
T ss_conf 420034315788999999861313565444-----5667788888888765410112104787752478999999-----
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999655558889999998601023278838889999999999999999999975
Q gi|254780357|r 82 NEIRANIGTYGSASASIFLIKHFHCIPVYGLIANILAIPILSFVVIPAGLIAILLMI 138 (394)
Q Consensus 82 ~~I~a~ls~~~~~a~~p~~~~~F~~~~~~~~~aNl~avP~~~~~v~p~~~~~~~l~p 138 (394)
T Consensus 313 ----~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~p~~~~~~~~~~ 365 (731)
T TIGR00361 313 ----FHLQLGLLLGLLPLQLFLFHGLSLTSFLANLLAVPLYTFLLVPLILAAVLLLG 365 (731)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf ----99999999876566666651002567888888878899999889999998752