Query         gi|254780357|ref|YP_003064770.1| hypothetical protein CLIBASIA_01210 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 394
No_of_seqs    195 out of 286
Neff          6.2 
Searched_HMMs 13730
Date          Wed Jun  1 04:54:30 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780357.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d1pjca1 c.2.1.4 (A:136-303) L-  74.5     1.8 0.00013   18.0   4.2   58  314-374    82-142 (168)
  2 d1l7da1 c.2.1.4 (A:144-326) Ni  45.2     6.3 0.00046   14.9   2.8   48  316-366   103-152 (183)
  3 d2bf5a1 d.137.1.1 (A:11-102) T  30.0      11 0.00082   13.4   1.9   39  319-357    18-56  (92)
  4 d1xk7a1 c.123.1.1 (A:4-405) Cr  24.7      14   0.001   12.9   1.9   47  315-368   299-345 (402)
  5 d1q7ea_ c.123.1.1 (A:) Hypothe  21.8      16  0.0012   12.5   3.0   42  315-363   318-359 (417)
  6 d1y0ka1 c.52.1.31 (A:1-209) Hy  15.0      23  0.0017   11.6   1.4   53  214-266    51-110 (209)
  7 d1sgva1 b.122.1.1 (A:236-292)   14.9      23  0.0017   11.6   1.3   19  221-239    28-46  (57)
  8 d1x74a1 c.123.1.1 (A:2-360) 2-  13.8      25  0.0018   11.4   1.2   40  315-361   280-319 (359)
  9 d1edza1 c.2.1.7 (A:149-319) Me  13.6      25  0.0018   11.4   2.6   24  314-337    84-107 (171)
 10 d1m5sa2 d.58.33.1 (A:146-297)   10.5      32  0.0023   10.8   1.3   38  291-328     1-38  (152)

No 1  
>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}
Probab=74.49  E-value=1.8  Score=18.05  Aligned_cols=58  Identities=12%  Similarity=0.257  Sum_probs=42.2

Q ss_pred             ECCCHHHHHHCCCCCEEEEECCCCCCCCCCCCCEEECHHHHH--HHCCEEEEECC-CCCCCCCC
Q ss_conf             717967866176535099962676677578870886688998--50948999747-76544555
Q gi|254780357|r  314 VLKRKDMIRLSCQLSDILITTIRDINTKLCNVSLLITPEILQ--KQGSLEITIIP-PSNDNDKV  374 (394)
Q Consensus       314 ~~~~~~~~~~~C~~adivI~~~~~~~~~~~~~~lvid~~~L~--~~Ga~ai~l~~-~~~~~~~~  374 (394)
                      ...+++.+.+....+|+||.+...|..   ..+.+++++.++  +.||+-+.+.- +|.-.|..
T Consensus        82 ~~~~~~~l~~~~~~aDivI~aalipG~---~aP~lIt~~mv~~Mk~GSVIVDvaidqGG~~Ets  142 (168)
T d1pjca1          82 LYSNSAEIETAVAEADLLIGAVLVPGR---RAPILVPASLVEQMRTGSVIVDVAVDQGGCVETL  142 (168)
T ss_dssp             EECCHHHHHHHHHTCSEEEECCCCTTS---SCCCCBCHHHHTTSCTTCEEEETTCTTCCSBTTC
T ss_pred             EHHHHHHHHHHHCCCCEEEEEEECCCC---CCCEEECHHHHHHCCCCCEEEEEECCCCCCCCCC
T ss_conf             222211477763057689982021886---4674425989951589968998443789865467


No 2  
>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}
Probab=45.21  E-value=6.3  Score=14.89  Aligned_cols=48  Identities=29%  Similarity=0.305  Sum_probs=37.4

Q ss_pred             CCHHHHHHCCCCCEEEEECCCCCCCCCCCCCEEECHHHHH--HHCCEEEEECC
Q ss_conf             7967866176535099962676677578870886688998--50948999747
Q gi|254780357|r  316 KRKDMIRLSCQLSDILITTIRDINTKLCNVSLLITPEILQ--KQGSLEITIIP  366 (394)
Q Consensus       316 ~~~~~~~~~C~~adivI~~~~~~~~~~~~~~lvid~~~L~--~~Ga~ai~l~~  366 (394)
                      ...+.+.+....+|+||++...|..   ..+.+++++-++  +.||+-+.+.-
T Consensus       103 ~~~~~l~~~l~~aDlVI~talipG~---~aP~lit~~mv~~Mk~GSVIVDvai  152 (183)
T d1l7da1         103 KQAEAVLKELVKTDIAITTALIPGK---PAPVLITEEMVTKMKPGSVIIDLAV  152 (183)
T ss_dssp             CHHHHHHHHHTTCSEEEECCCCTTS---CCCCCSCHHHHTTSCTTCEEEETTG
T ss_pred             HHHHHHHHHHHHHHHHEEEEECCCC---CCCEEEHHHHHHHCCCCCEEEEEEE
T ss_conf             8899999999862332010023786---5442105899973589948999864


No 3  
>d2bf5a1 d.137.1.1 (A:11-102) Toluene-4-monooxygenase catalytic effector protein {Pseudomonas mendocina [TaxId: 300]}
Probab=29.99  E-value=11  Score=13.45  Aligned_cols=39  Identities=15%  Similarity=0.193  Sum_probs=27.3

Q ss_pred             HHHHHCCCCCEEEEECCCCCCCCCCCCCEEECHHHHHHH
Q ss_conf             786617653509996267667757887088668899850
Q gi|254780357|r  319 DMIRLSCQLSDILITTIRDINTKLCNVSLLITPEILQKQ  357 (394)
Q Consensus       319 ~~~~~~C~~adivI~~~~~~~~~~~~~~lvid~~~L~~~  357 (394)
                      |++.+|+=.++++|...+..-...+.+.++++++++.+.
T Consensus        18 eai~~DNP~~~i~V~d~~a~vrI~a~g~L~i~r~tieE~   56 (92)
T d2bf5a1          18 ETAEIDNPGKEITVEDRRAYVRIAAEGELILTRKTLEEQ   56 (92)
T ss_dssp             HHHHHHSTTCCCEEECCTTCEEEEEESEEEEEHHHHHHH
T ss_pred             HHHHHHCCCCEEEEEECCCEEEEECCCEEEEEHHHHHHH
T ss_conf             999857989779995068689990298599987898998


No 4  
>d1xk7a1 c.123.1.1 (A:4-405) Crotonobetainyl-CoA:carnitine CoA-transferase, CaiB {Escherichia coli [TaxId: 562]}
Probab=24.67  E-value=14  Score=12.88  Aligned_cols=47  Identities=6%  Similarity=-0.074  Sum_probs=29.5

Q ss_pred             CCCHHHHHHCCCCCEEEEECCCCCCCCCCCCCEEECHHHHHHHCCEEEEECCCC
Q ss_conf             179678661765350999626766775788708866889985094899974776
Q gi|254780357|r  315 LKRKDMIRLSCQLSDILITTIRDINTKLCNVSLLITPEILQKQGSLEITIIPPS  368 (394)
Q Consensus       315 ~~~~~~~~~~C~~adivI~~~~~~~~~~~~~~lvid~~~L~~~Ga~ai~l~~~~  368 (394)
                      .++.+.+.+.++.+++.........       .+++-..++.+|.+.-+-.+++
T Consensus       299 ~~t~~e~~~~l~~~gvp~apV~~~~-------e~~~dpq~~~r~~~~~~~~~~~  345 (402)
T d1xk7a1         299 THTIAEVKERFAELNIACAKVLTVP-------ELESNPQYVARESITQWQTMDG  345 (402)
T ss_dssp             TSCHHHHHHHHHHTTCEEEECCCGG-------GSTTCHHHHHHTCEEEEECTTS
T ss_pred             HCCCHHHHHHHHCCCCEEECCCCHH-------HHHHCHHHHHHCCEEEEECCCC
T ss_conf             5021145566550795010478999-------9877989897199998876899


No 5  
>d1q7ea_ c.123.1.1 (A:) Hypothetical protein YfdW {Escherichia coli [TaxId: 562]}
Probab=21.80  E-value=16  Score=12.55  Aligned_cols=42  Identities=14%  Similarity=0.033  Sum_probs=25.1

Q ss_pred             CCCHHHHHHCCCCCEEEEECCCCCCCCCCCCCEEECHHHHHHHCCEEEE
Q ss_conf             1796786617653509996267667757887088668899850948999
Q gi|254780357|r  315 LKRKDMIRLSCQLSDILITTIRDINTKLCNVSLLITPEILQKQGSLEIT  363 (394)
Q Consensus       315 ~~~~~~~~~~C~~adivI~~~~~~~~~~~~~~lvid~~~L~~~Ga~ai~  363 (394)
                      .++.+.+.+.|..++|-+.......       .+++-..++.+|...-.
T Consensus       318 ~~t~~e~~~~l~~~~ip~~pV~~~~-------e~~~dpq~~~r~~~~~~  359 (417)
T d1q7ea_         318 TIDKHEAVAYLTQFDIPCAPVLSMK-------EISLDPSLRQSGSVVEV  359 (417)
T ss_dssp             TSCHHHHHHHHGGGTCCEEECCCHH-------HHHHCHHHHHTTSEEEE
T ss_pred             CCCCCHHEEEEECCCEEEEECCCHH-------HHHHCHHHHHCCCEEEE
T ss_conf             3331011012323770267448899-------99769898972999996


No 6  
>d1y0ka1 c.52.1.31 (A:1-209) Hypothetical protein PA4535 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=14.96  E-value=23  Score=11.61  Aligned_cols=53  Identities=21%  Similarity=0.100  Sum_probs=36.5

Q ss_pred             HCCCCCCCEEEECCCCCEEEEECCCEEEEE-------CCCCCCHHHHHHHHHCCCCCCCC
Q ss_conf             234677734898699968799748804663-------47744137988987517653333
Q gi|254780357|r  214 TFPYSFSPDLLISEKGNLVALVDKNTLISN-------YSNPPSFIFSQWKSALITPFHEA  266 (394)
Q Consensus       214 ~~~~~~~PdilIs~dG~lVav~~~~g~~~~-------~~r~~~F~~~~W~~~~g~~~~~~  266 (394)
                      ..+..++||+|.-+.+--|=..-.+|+-++       ..|.+.|..+|-.+...-+....
T Consensus        51 ~~~gqeppdvlfrda~fevffvldegrrlndewr~el~rrrsa~slsqlvrrearp~rip  110 (209)
T d1y0ka1          51 AAPGEQPPDVLFKGAGFEVFFVLDEGRRLNEEWREELTRRRQAVSLRQLIRREERPQRIA  110 (209)
T ss_dssp             ECCSSSSCSEEETTEEEEEEEEECC-----------------------------CCEEEE
T ss_pred             CCCCCCCCCEEECCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf             766789985122168647999844664026999999998886601999986440656585


No 7  
>d1sgva1 b.122.1.1 (A:236-292) Pseudouridine synthase II TruB, C-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=14.95  E-value=23  Score=11.61  Aligned_cols=19  Identities=16%  Similarity=0.228  Sum_probs=9.6

Q ss_pred             CEEEECCCCCEEEEECCCE
Q ss_conf             3489869996879974880
Q gi|254780357|r  221 PDLLISEKGNLVALVDKNT  239 (394)
Q Consensus       221 PdilIs~dG~lVav~~~~g  239 (394)
                      |--.+++||+++|+..+.|
T Consensus        28 ~~Aa~~PdG~~iALl~~~g   46 (57)
T d1sgva1          28 VYAACDADGRVIALLRDEG   46 (57)
T ss_dssp             CEEEECTTSCEEEEEEEET
T ss_pred             CEEEECCCCCEEEEEECCC
T ss_conf             7799999997999997468


No 8  
>d1x74a1 c.123.1.1 (A:2-360) 2-methylacyl-CoA racemase Mcr {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=13.79  E-value=25  Score=11.42  Aligned_cols=40  Identities=10%  Similarity=0.057  Sum_probs=24.2

Q ss_pred             CCCHHHHHHCCCCCEEEEECCCCCCCCCCCCCEEECHHHHHHHCCEE
Q ss_conf             17967866176535099962676677578870886688998509489
Q gi|254780357|r  315 LKRKDMIRLSCQLSDILITTIRDINTKLCNVSLLITPEILQKQGSLE  361 (394)
Q Consensus       315 ~~~~~~~~~~C~~adivI~~~~~~~~~~~~~~lvid~~~L~~~Ga~a  361 (394)
                      .++.+.+.+.++.++|-........       .+++-..+..+|...
T Consensus       280 ~~t~~e~~~~l~~~gvp~~pV~~~~-------ev~~dpq~~~r~~~~  319 (359)
T d1x74a1         280 SHDRDHWGAVFANSDACVTPVLAFG-------EVHNEPHIIERNTFY  319 (359)
T ss_dssp             TSCHHHHHHHTSSSSSCEEECCCHH-------HHTTCHHHHHTTCEE
T ss_pred             HHHHHHHHHHHHHCCCEEEECCCHH-------HHHHCHHHHHHCCEE
T ss_conf             6648999999976797089528999-------987497889719999


No 9  
>d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=13.64  E-value=25  Score=11.40  Aligned_cols=24  Identities=21%  Similarity=0.254  Sum_probs=18.7

Q ss_pred             ECCCHHHHHHCCCCCEEEEECCCC
Q ss_conf             717967866176535099962676
Q gi|254780357|r  314 VLKRKDMIRLSCQLSDILITTIRD  337 (394)
Q Consensus       314 ~~~~~~~~~~~C~~adivI~~~~~  337 (394)
                      -..+++.+.+.|..+|++|+....
T Consensus        84 ~~~~~~~lk~~~~~aDIvIsavG~  107 (171)
T d1edza1          84 GEYSEDLLKKCSLDSDVVITGVPS  107 (171)
T ss_dssp             EECCHHHHHHHHHHCSEEEECCCC
T ss_pred             CCCCHHHHHHCCCCCCEEEECCCC
T ss_conf             212366776416237899990488


No 10 
>d1m5sa2 d.58.33.1 (A:146-297) Formylmethanofuran:tetrahydromethanopterin formyltransferase {Archaeon Methanosarcina barkeri [TaxId: 2208]}
Probab=10.52  E-value=32  Score=10.81  Aligned_cols=38  Identities=5%  Similarity=-0.087  Sum_probs=0.0

Q ss_pred             CCCEEECCCCCEEEECCCCEEEEECCCHHHHHHCCCCC
Q ss_conf             66501336651133237865999717967866176535
Q gi|254780357|r  291 PRKFLCIKKSFCVGCHRSDVIVGVLKRKDMIRLSCQLS  328 (394)
Q Consensus       291 ~~~~~c~~~~~c~~~~~~g~~va~~~~~~~~~~~C~~a  328 (394)
                      +|.|.|.+..+..-..-+|....+.++.++.-.+|..|
T Consensus         1 dGEFl~Ee~~g~~~gVgGGNflil~~~~~~aL~AaeaA   38 (152)
T d1m5sa2           1 EGDFLAEENIGAIAGIAGGNFFIFGDSQMTALTAAEAA   38 (152)
T ss_dssp             TEEEEEESCEEEEEEEEEEEEEEEESSHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCEEECCEEEEEECCHHHHHHHHHHH
T ss_conf             98669886306333024204899978989999999999


Done!