Query gi|254780357|ref|YP_003064770.1| hypothetical protein CLIBASIA_01210 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 394 No_of_seqs 195 out of 286 Neff 6.2 Searched_HMMs 13730 Date Wed Jun 1 04:54:30 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780357.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d1pjca1 c.2.1.4 (A:136-303) L- 74.5 1.8 0.00013 18.0 4.2 58 314-374 82-142 (168) 2 d1l7da1 c.2.1.4 (A:144-326) Ni 45.2 6.3 0.00046 14.9 2.8 48 316-366 103-152 (183) 3 d2bf5a1 d.137.1.1 (A:11-102) T 30.0 11 0.00082 13.4 1.9 39 319-357 18-56 (92) 4 d1xk7a1 c.123.1.1 (A:4-405) Cr 24.7 14 0.001 12.9 1.9 47 315-368 299-345 (402) 5 d1q7ea_ c.123.1.1 (A:) Hypothe 21.8 16 0.0012 12.5 3.0 42 315-363 318-359 (417) 6 d1y0ka1 c.52.1.31 (A:1-209) Hy 15.0 23 0.0017 11.6 1.4 53 214-266 51-110 (209) 7 d1sgva1 b.122.1.1 (A:236-292) 14.9 23 0.0017 11.6 1.3 19 221-239 28-46 (57) 8 d1x74a1 c.123.1.1 (A:2-360) 2- 13.8 25 0.0018 11.4 1.2 40 315-361 280-319 (359) 9 d1edza1 c.2.1.7 (A:149-319) Me 13.6 25 0.0018 11.4 2.6 24 314-337 84-107 (171) 10 d1m5sa2 d.58.33.1 (A:146-297) 10.5 32 0.0023 10.8 1.3 38 291-328 1-38 (152) No 1 >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} Probab=74.49 E-value=1.8 Score=18.05 Aligned_cols=58 Identities=12% Similarity=0.257 Sum_probs=42.2 Q ss_pred ECCCHHHHHHCCCCCEEEEECCCCCCCCCCCCCEEECHHHHH--HHCCEEEEECC-CCCCCCCC Q ss_conf 717967866176535099962676677578870886688998--50948999747-76544555 Q gi|254780357|r 314 VLKRKDMIRLSCQLSDILITTIRDINTKLCNVSLLITPEILQ--KQGSLEITIIP-PSNDNDKV 374 (394) Q Consensus 314 ~~~~~~~~~~~C~~adivI~~~~~~~~~~~~~~lvid~~~L~--~~Ga~ai~l~~-~~~~~~~~ 374 (394) ...+++.+.+....+|+||.+...|.. ..+.+++++.++ +.||+-+.+.- +|.-.|.. T Consensus 82 ~~~~~~~l~~~~~~aDivI~aalipG~---~aP~lIt~~mv~~Mk~GSVIVDvaidqGG~~Ets 142 (168) T d1pjca1 82 LYSNSAEIETAVAEADLLIGAVLVPGR---RAPILVPASLVEQMRTGSVIVDVAVDQGGCVETL 142 (168) T ss_dssp EECCHHHHHHHHHTCSEEEECCCCTTS---SCCCCBCHHHHTTSCTTCEEEETTCTTCCSBTTC T ss_pred EHHHHHHHHHHHCCCCEEEEEEECCCC---CCCEEECHHHHHHCCCCCEEEEEECCCCCCCCCC T ss_conf 222211477763057689982021886---4674425989951589968998443789865467 No 2 >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} Probab=45.21 E-value=6.3 Score=14.89 Aligned_cols=48 Identities=29% Similarity=0.305 Sum_probs=37.4 Q ss_pred CCHHHHHHCCCCCEEEEECCCCCCCCCCCCCEEECHHHHH--HHCCEEEEECC Q ss_conf 7967866176535099962676677578870886688998--50948999747 Q gi|254780357|r 316 KRKDMIRLSCQLSDILITTIRDINTKLCNVSLLITPEILQ--KQGSLEITIIP 366 (394) Q Consensus 316 ~~~~~~~~~C~~adivI~~~~~~~~~~~~~~lvid~~~L~--~~Ga~ai~l~~ 366 (394) ...+.+.+....+|+||++...|.. ..+.+++++-++ +.||+-+.+.- T Consensus 103 ~~~~~l~~~l~~aDlVI~talipG~---~aP~lit~~mv~~Mk~GSVIVDvai 152 (183) T d1l7da1 103 KQAEAVLKELVKTDIAITTALIPGK---PAPVLITEEMVTKMKPGSVIIDLAV 152 (183) T ss_dssp CHHHHHHHHHTTCSEEEECCCCTTS---CCCCCSCHHHHTTSCTTCEEEETTG T ss_pred HHHHHHHHHHHHHHHHEEEEECCCC---CCCEEEHHHHHHHCCCCCEEEEEEE T ss_conf 8899999999862332010023786---5442105899973589948999864 No 3 >d2bf5a1 d.137.1.1 (A:11-102) Toluene-4-monooxygenase catalytic effector protein {Pseudomonas mendocina [TaxId: 300]} Probab=29.99 E-value=11 Score=13.45 Aligned_cols=39 Identities=15% Similarity=0.193 Sum_probs=27.3 Q ss_pred HHHHHCCCCCEEEEECCCCCCCCCCCCCEEECHHHHHHH Q ss_conf 786617653509996267667757887088668899850 Q gi|254780357|r 319 DMIRLSCQLSDILITTIRDINTKLCNVSLLITPEILQKQ 357 (394) Q Consensus 319 ~~~~~~C~~adivI~~~~~~~~~~~~~~lvid~~~L~~~ 357 (394) |++.+|+=.++++|...+..-...+.+.++++++++.+. T Consensus 18 eai~~DNP~~~i~V~d~~a~vrI~a~g~L~i~r~tieE~ 56 (92) T d2bf5a1 18 ETAEIDNPGKEITVEDRRAYVRIAAEGELILTRKTLEEQ 56 (92) T ss_dssp HHHHHHSTTCCCEEECCTTCEEEEEESEEEEEHHHHHHH T ss_pred HHHHHHCCCCEEEEEECCCEEEEECCCEEEEEHHHHHHH T ss_conf 999857989779995068689990298599987898998 No 4 >d1xk7a1 c.123.1.1 (A:4-405) Crotonobetainyl-CoA:carnitine CoA-transferase, CaiB {Escherichia coli [TaxId: 562]} Probab=24.67 E-value=14 Score=12.88 Aligned_cols=47 Identities=6% Similarity=-0.074 Sum_probs=29.5 Q ss_pred CCCHHHHHHCCCCCEEEEECCCCCCCCCCCCCEEECHHHHHHHCCEEEEECCCC Q ss_conf 179678661765350999626766775788708866889985094899974776 Q gi|254780357|r 315 LKRKDMIRLSCQLSDILITTIRDINTKLCNVSLLITPEILQKQGSLEITIIPPS 368 (394) Q Consensus 315 ~~~~~~~~~~C~~adivI~~~~~~~~~~~~~~lvid~~~L~~~Ga~ai~l~~~~ 368 (394) .++.+.+.+.++.+++......... .+++-..++.+|.+.-+-.+++ T Consensus 299 ~~t~~e~~~~l~~~gvp~apV~~~~-------e~~~dpq~~~r~~~~~~~~~~~ 345 (402) T d1xk7a1 299 THTIAEVKERFAELNIACAKVLTVP-------ELESNPQYVARESITQWQTMDG 345 (402) T ss_dssp TSCHHHHHHHHHHTTCEEEECCCGG-------GSTTCHHHHHHTCEEEEECTTS T ss_pred HCCCHHHHHHHHCCCCEEECCCCHH-------HHHHCHHHHHHCCEEEEECCCC T ss_conf 5021145566550795010478999-------9877989897199998876899 No 5 >d1q7ea_ c.123.1.1 (A:) Hypothetical protein YfdW {Escherichia coli [TaxId: 562]} Probab=21.80 E-value=16 Score=12.55 Aligned_cols=42 Identities=14% Similarity=0.033 Sum_probs=25.1 Q ss_pred CCCHHHHHHCCCCCEEEEECCCCCCCCCCCCCEEECHHHHHHHCCEEEE Q ss_conf 1796786617653509996267667757887088668899850948999 Q gi|254780357|r 315 LKRKDMIRLSCQLSDILITTIRDINTKLCNVSLLITPEILQKQGSLEIT 363 (394) Q Consensus 315 ~~~~~~~~~~C~~adivI~~~~~~~~~~~~~~lvid~~~L~~~Ga~ai~ 363 (394) .++.+.+.+.|..++|-+....... .+++-..++.+|...-. T Consensus 318 ~~t~~e~~~~l~~~~ip~~pV~~~~-------e~~~dpq~~~r~~~~~~ 359 (417) T d1q7ea_ 318 TIDKHEAVAYLTQFDIPCAPVLSMK-------EISLDPSLRQSGSVVEV 359 (417) T ss_dssp TSCHHHHHHHHGGGTCCEEECCCHH-------HHHHCHHHHHTTSEEEE T ss_pred CCCCCHHEEEEECCCEEEEECCCHH-------HHHHCHHHHHCCCEEEE T ss_conf 3331011012323770267448899-------99769898972999996 No 6 >d1y0ka1 c.52.1.31 (A:1-209) Hypothetical protein PA4535 {Pseudomonas aeruginosa [TaxId: 287]} Probab=14.96 E-value=23 Score=11.61 Aligned_cols=53 Identities=21% Similarity=0.100 Sum_probs=36.5 Q ss_pred HCCCCCCCEEEECCCCCEEEEECCCEEEEE-------CCCCCCHHHHHHHHHCCCCCCCC Q ss_conf 234677734898699968799748804663-------47744137988987517653333 Q gi|254780357|r 214 TFPYSFSPDLLISEKGNLVALVDKNTLISN-------YSNPPSFIFSQWKSALITPFHEA 266 (394) Q Consensus 214 ~~~~~~~PdilIs~dG~lVav~~~~g~~~~-------~~r~~~F~~~~W~~~~g~~~~~~ 266 (394) ..+..++||+|.-+.+--|=..-.+|+-++ ..|.+.|..+|-.+...-+.... T Consensus 51 ~~~gqeppdvlfrda~fevffvldegrrlndewr~el~rrrsa~slsqlvrrearp~rip 110 (209) T d1y0ka1 51 AAPGEQPPDVLFKGAGFEVFFVLDEGRRLNEEWREELTRRRQAVSLRQLIRREERPQRIA 110 (209) T ss_dssp ECCSSSSCSEEETTEEEEEEEEECC-----------------------------CCEEEE T ss_pred CCCCCCCCCEEECCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC T ss_conf 766789985122168647999844664026999999998886601999986440656585 No 7 >d1sgva1 b.122.1.1 (A:236-292) Pseudouridine synthase II TruB, C-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]} Probab=14.95 E-value=23 Score=11.61 Aligned_cols=19 Identities=16% Similarity=0.228 Sum_probs=9.6 Q ss_pred CEEEECCCCCEEEEECCCE Q ss_conf 3489869996879974880 Q gi|254780357|r 221 PDLLISEKGNLVALVDKNT 239 (394) Q Consensus 221 PdilIs~dG~lVav~~~~g 239 (394) |--.+++||+++|+..+.| T Consensus 28 ~~Aa~~PdG~~iALl~~~g 46 (57) T d1sgva1 28 VYAACDADGRVIALLRDEG 46 (57) T ss_dssp CEEEECTTSCEEEEEEEET T ss_pred CEEEECCCCCEEEEEECCC T ss_conf 7799999997999997468 No 8 >d1x74a1 c.123.1.1 (A:2-360) 2-methylacyl-CoA racemase Mcr {Mycobacterium tuberculosis [TaxId: 1773]} Probab=13.79 E-value=25 Score=11.42 Aligned_cols=40 Identities=10% Similarity=0.057 Sum_probs=24.2 Q ss_pred CCCHHHHHHCCCCCEEEEECCCCCCCCCCCCCEEECHHHHHHHCCEE Q ss_conf 17967866176535099962676677578870886688998509489 Q gi|254780357|r 315 LKRKDMIRLSCQLSDILITTIRDINTKLCNVSLLITPEILQKQGSLE 361 (394) Q Consensus 315 ~~~~~~~~~~C~~adivI~~~~~~~~~~~~~~lvid~~~L~~~Ga~a 361 (394) .++.+.+.+.++.++|-........ .+++-..+..+|... T Consensus 280 ~~t~~e~~~~l~~~gvp~~pV~~~~-------ev~~dpq~~~r~~~~ 319 (359) T d1x74a1 280 SHDRDHWGAVFANSDACVTPVLAFG-------EVHNEPHIIERNTFY 319 (359) T ss_dssp TSCHHHHHHHTSSSSSCEEECCCHH-------HHTTCHHHHHTTCEE T ss_pred HHHHHHHHHHHHHCCCEEEECCCHH-------HHHHCHHHHHHCCEE T ss_conf 6648999999976797089528999-------987497889719999 No 9 >d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Probab=13.64 E-value=25 Score=11.40 Aligned_cols=24 Identities=21% Similarity=0.254 Sum_probs=18.7 Q ss_pred ECCCHHHHHHCCCCCEEEEECCCC Q ss_conf 717967866176535099962676 Q gi|254780357|r 314 VLKRKDMIRLSCQLSDILITTIRD 337 (394) Q Consensus 314 ~~~~~~~~~~~C~~adivI~~~~~ 337 (394) -..+++.+.+.|..+|++|+.... T Consensus 84 ~~~~~~~lk~~~~~aDIvIsavG~ 107 (171) T d1edza1 84 GEYSEDLLKKCSLDSDVVITGVPS 107 (171) T ss_dssp EECCHHHHHHHHHHCSEEEECCCC T ss_pred CCCCHHHHHHCCCCCCEEEECCCC T ss_conf 212366776416237899990488 No 10 >d1m5sa2 d.58.33.1 (A:146-297) Formylmethanofuran:tetrahydromethanopterin formyltransferase {Archaeon Methanosarcina barkeri [TaxId: 2208]} Probab=10.52 E-value=32 Score=10.81 Aligned_cols=38 Identities=5% Similarity=-0.087 Sum_probs=0.0 Q ss_pred CCCEEECCCCCEEEECCCCEEEEECCCHHHHHHCCCCC Q ss_conf 66501336651133237865999717967866176535 Q gi|254780357|r 291 PRKFLCIKKSFCVGCHRSDVIVGVLKRKDMIRLSCQLS 328 (394) Q Consensus 291 ~~~~~c~~~~~c~~~~~~g~~va~~~~~~~~~~~C~~a 328 (394) +|.|.|.+..+..-..-+|....+.++.++.-.+|..| T Consensus 1 dGEFl~Ee~~g~~~gVgGGNflil~~~~~~aL~AaeaA 38 (152) T d1m5sa2 1 EGDFLAEENIGAIAGIAGGNFFIFGDSQMTALTAAEAA 38 (152) T ss_dssp TEEEEEESCEEEEEEEEEEEEEEEESSHHHHHHHHHHH T ss_pred CCCEEEEEECCCCCEEECCEEEEEECCHHHHHHHHHHH T ss_conf 98669886306333024204899978989999999999 Done!