RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254780357|ref|YP_003064770.1| hypothetical protein
CLIBASIA_01210 [Candidatus Liberibacter asiaticus str. psy62]
         (394 letters)



>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like
           protein, CBS domain, , structural genomics, PSI-2; HET:
           MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB:
           3fna_A* (A:36-105)
          Length = 70

 Score = 32.0 bits (73), Expect = 0.12
 Identities = 11/61 (18%), Positives = 23/61 (37%), Gaps = 5/61 (8%)

Query: 281 SLKEILRSMQPRKFLCIKKSFCVGCHRSDVIVGVLKRKDMIRLSCQLSDILITTIRDINT 340
           +L++ L  +  +            C     I+G+    D+ R+     D    +I D+ T
Sbjct: 13  TLRDALLEITRKNL-----GXTAICDDDXNIIGIFTDGDLRRVFDTGVDXRDASIADVXT 67

Query: 341 K 341
           +
Sbjct: 68  R 68


>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator,
           central glycolytic gene regulator, transcription; 1.95A
           {Bacillus subtilis} PDB: 3fwr_A* 3fws_A* (A:22-96)
          Length = 75

 Score = 28.6 bits (64), Expect = 1.6
 Identities = 15/61 (24%), Positives = 26/61 (42%), Gaps = 5/61 (8%)

Query: 281 SLKEILRSMQPRKFLCIKKSFCVGCHRSDVIVGVLKRKDMIRLSCQLSDILITTIRDINT 340
           S+ + + +M                 R  V+VGVL RKD++R S    ++    +  I T
Sbjct: 13  SVYDAICTMFLEDV-----GTLFVVDRDAVLVGVLSRKDLLRASIGQQELTSVPVHIIMT 67

Query: 341 K 341
           +
Sbjct: 68  R 68


>1wu3_I Interferon beta, IFN-beta; alpha-helix-bundle, cytokine;
           2.15A {Mus musculus} (I:)
          Length = 161

 Score = 26.3 bits (58), Expect = 6.3
 Identities = 13/96 (13%), Positives = 29/96 (30%), Gaps = 18/96 (18%)

Query: 253 SQWKSALITPFHEAPHVQKEDLQEKNQSSLKEILRSMQPRKFLCIKKSFCVGCHRSDVIV 312
           + W   ++    +  H Q   L+   +   +E L        L +K  +     R   + 
Sbjct: 73  TGWNETIVVRLLDELHQQTVFLKTVLEEKQEERLTWEMSSTALHLKSYY----WR---VQ 125

Query: 313 GVLKRKD-------MIRL----SCQLSDILITTIRD 337
             LK          ++R     +  +   L    ++
Sbjct: 126 RYLKLMKYNSYAWMVVRAEIFRNFLIIRRLTRNFQN 161


>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1;
           phosphorylation, nucleotide-binding,
           serine/threonine-protein kinase, magnesium, CBS domain;
           HET: AMP; 2.10A {Rattus norvegicus} (E:88-125,E:192-268)
          Length = 115

 Score = 26.3 bits (57), Expect = 6.4
 Identities = 18/72 (25%), Positives = 37/72 (51%), Gaps = 4/72 (5%)

Query: 51  YFYSIPKMIYSSESHNTWTWKKISSIKQSFLNEIRANIGTYGSASASIFLIKHFHCIPVY 110
           Y+ S    IY  E H   TW+++  ++ SFL E++  IGTY + +        +  + ++
Sbjct: 10  YYKSALVQIYELEEHKIETWREV-YLQDSFLEELQ--IGTYANIAMVRTTTPVYVALGIF 66

Query: 111 GLIANILAIPIL 122
            +   + A+P++
Sbjct: 67  -VQHRVSALPVV 77


>3c8y_A Iron hydrogenase 1; dithiomethylether, H-cluster, 4Fe-4S,
           iron-sulfur, metal-binding, oxidoreductase; HET: HCN;
           1.39A {Clostridium pasteurianum} (A:506-574)
          Length = 69

 Score = 26.3 bits (58), Expect = 6.4
 Identities = 7/32 (21%), Positives = 13/32 (40%)

Query: 262 PFHEAPHVQKEDLQEKNQSSLKEILRSMQPRK 293
           P      ++K D+++   S L      +  RK
Sbjct: 5   PHVNPKDLEKVDIKKVRASVLYNQDEHLSKRK 36


>1hyo_A Fumarylacetoacetate hydrolase; beta-sandwich roll; HET: HBU;
           1.30A {Mus musculus} (A:1-121)
          Length = 121

 Score = 26.3 bits (58), Expect = 6.7
 Identities = 8/33 (24%), Positives = 15/33 (45%), Gaps = 4/33 (12%)

Query: 140 SLDNIPFGVMAWGLDIIIHIAHRISVAHNEFCI 172
            + N+P+GV +   +       RI VA  +  +
Sbjct: 15  PIQNLPYGVFSTQSN----PKPRIGVAIGDQIL 43


>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta
           synthetase (CBS) domains containing protein, transport
           protein; 1.60A {Homo sapiens} (A:1-97)
          Length = 97

 Score = 26.0 bits (57), Expect = 7.7
 Identities = 9/65 (13%), Positives = 26/65 (40%), Gaps = 7/65 (10%)

Query: 281 SLKEILRSMQPRKFLCIKKSFCVGCHRSDVIVGVLKRKDMIRL----SCQLSDILITTIR 336
            L+E+++ +             V    S ++VG+++R  +++         +      ++
Sbjct: 31  PLEEVVKVVTSTDVTEY---PLVESTESQILVGIVQRAQLVQALQAEPPSRAPGHQQCLQ 87

Query: 337 DINTK 341
           DI  +
Sbjct: 88  DILAR 92


>3kgb_A Thymidylate synthase 1/2; ssgcid, NIH, niaid, SBRI, UW,
           decode, methyltransferase, nucleotide biosynthesis,
           transferase; 2.20A {Encephalitozoon cuniculi gb-m1} (A:)
          Length = 294

 Score = 25.8 bits (56), Expect = 9.3
 Identities = 9/46 (19%), Positives = 19/46 (41%)

Query: 162 RISVAHNEFCIGRIPETSFVTIVVEFLLMVFCKTNIRHIGSIMIGI 207
           R S+  N F +       +  +V E L  +  +T+ + +    + I
Sbjct: 43  RFSLEDNTFPLLTTRRVFYRGVVEELLFFLRGETDSKVLEKKGVRI 88


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.325    0.141    0.425 

Gapped
Lambda     K      H
   0.267   0.0536    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 2,999,036
Number of extensions: 134581
Number of successful extensions: 398
Number of sequences better than 10.0: 1
Number of HSP's gapped: 398
Number of HSP's successfully gapped: 16
Length of query: 394
Length of database: 4,956,049
Length adjustment: 90
Effective length of query: 304
Effective length of database: 1,913,599
Effective search space: 581734096
Effective search space used: 581734096
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.4 bits)