RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|254780357|ref|YP_003064770.1| hypothetical protein CLIBASIA_01210 [Candidatus Liberibacter asiaticus str. psy62] (394 letters) >3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, , structural genomics, PSI-2; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A* (A:36-105) Length = 70 Score = 32.0 bits (73), Expect = 0.12 Identities = 11/61 (18%), Positives = 23/61 (37%), Gaps = 5/61 (8%) Query: 281 SLKEILRSMQPRKFLCIKKSFCVGCHRSDVIVGVLKRKDMIRLSCQLSDILITTIRDINT 340 +L++ L + + C I+G+ D+ R+ D +I D+ T Sbjct: 13 TLRDALLEITRKNL-----GXTAICDDDXNIIGIFTDGDLRRVFDTGVDXRDASIADVXT 67 Query: 341 K 341 + Sbjct: 68 R 68 >3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic gene regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A* (A:22-96) Length = 75 Score = 28.6 bits (64), Expect = 1.6 Identities = 15/61 (24%), Positives = 26/61 (42%), Gaps = 5/61 (8%) Query: 281 SLKEILRSMQPRKFLCIKKSFCVGCHRSDVIVGVLKRKDMIRLSCQLSDILITTIRDINT 340 S+ + + +M R V+VGVL RKD++R S ++ + I T Sbjct: 13 SVYDAICTMFLEDV-----GTLFVVDRDAVLVGVLSRKDLLRASIGQQELTSVPVHIIMT 67 Query: 341 K 341 + Sbjct: 68 R 68 >1wu3_I Interferon beta, IFN-beta; alpha-helix-bundle, cytokine; 2.15A {Mus musculus} (I:) Length = 161 Score = 26.3 bits (58), Expect = 6.3 Identities = 13/96 (13%), Positives = 29/96 (30%), Gaps = 18/96 (18%) Query: 253 SQWKSALITPFHEAPHVQKEDLQEKNQSSLKEILRSMQPRKFLCIKKSFCVGCHRSDVIV 312 + W ++ + H Q L+ + +E L L +K + R + Sbjct: 73 TGWNETIVVRLLDELHQQTVFLKTVLEEKQEERLTWEMSSTALHLKSYY----WR---VQ 125 Query: 313 GVLKRKD-------MIRL----SCQLSDILITTIRD 337 LK ++R + + L ++ Sbjct: 126 RYLKLMKYNSYAWMVVRAEIFRNFLIIRRLTRNFQN 161 >2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protein kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} (E:88-125,E:192-268) Length = 115 Score = 26.3 bits (57), Expect = 6.4 Identities = 18/72 (25%), Positives = 37/72 (51%), Gaps = 4/72 (5%) Query: 51 YFYSIPKMIYSSESHNTWTWKKISSIKQSFLNEIRANIGTYGSASASIFLIKHFHCIPVY 110 Y+ S IY E H TW+++ ++ SFL E++ IGTY + + + + ++ Sbjct: 10 YYKSALVQIYELEEHKIETWREV-YLQDSFLEELQ--IGTYANIAMVRTTTPVYVALGIF 66 Query: 111 GLIANILAIPIL 122 + + A+P++ Sbjct: 67 -VQHRVSALPVV 77 >3c8y_A Iron hydrogenase 1; dithiomethylether, H-cluster, 4Fe-4S, iron-sulfur, metal-binding, oxidoreductase; HET: HCN; 1.39A {Clostridium pasteurianum} (A:506-574) Length = 69 Score = 26.3 bits (58), Expect = 6.4 Identities = 7/32 (21%), Positives = 13/32 (40%) Query: 262 PFHEAPHVQKEDLQEKNQSSLKEILRSMQPRK 293 P ++K D+++ S L + RK Sbjct: 5 PHVNPKDLEKVDIKKVRASVLYNQDEHLSKRK 36 >1hyo_A Fumarylacetoacetate hydrolase; beta-sandwich roll; HET: HBU; 1.30A {Mus musculus} (A:1-121) Length = 121 Score = 26.3 bits (58), Expect = 6.7 Identities = 8/33 (24%), Positives = 15/33 (45%), Gaps = 4/33 (12%) Query: 140 SLDNIPFGVMAWGLDIIIHIAHRISVAHNEFCI 172 + N+P+GV + + RI VA + + Sbjct: 15 PIQNLPYGVFSTQSN----PKPRIGVAIGDQIL 43 >2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens} (A:1-97) Length = 97 Score = 26.0 bits (57), Expect = 7.7 Identities = 9/65 (13%), Positives = 26/65 (40%), Gaps = 7/65 (10%) Query: 281 SLKEILRSMQPRKFLCIKKSFCVGCHRSDVIVGVLKRKDMIRL----SCQLSDILITTIR 336 L+E+++ + V S ++VG+++R +++ + ++ Sbjct: 31 PLEEVVKVVTSTDVTEY---PLVESTESQILVGIVQRAQLVQALQAEPPSRAPGHQQCLQ 87 Query: 337 DINTK 341 DI + Sbjct: 88 DILAR 92 >3kgb_A Thymidylate synthase 1/2; ssgcid, NIH, niaid, SBRI, UW, decode, methyltransferase, nucleotide biosynthesis, transferase; 2.20A {Encephalitozoon cuniculi gb-m1} (A:) Length = 294 Score = 25.8 bits (56), Expect = 9.3 Identities = 9/46 (19%), Positives = 19/46 (41%) Query: 162 RISVAHNEFCIGRIPETSFVTIVVEFLLMVFCKTNIRHIGSIMIGI 207 R S+ N F + + +V E L + +T+ + + + I Sbjct: 43 RFSLEDNTFPLLTTRRVFYRGVVEELLFFLRGETDSKVLEKKGVRI 88 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.325 0.141 0.425 Gapped Lambda K H 0.267 0.0536 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 2,999,036 Number of extensions: 134581 Number of successful extensions: 398 Number of sequences better than 10.0: 1 Number of HSP's gapped: 398 Number of HSP's successfully gapped: 16 Length of query: 394 Length of database: 4,956,049 Length adjustment: 90 Effective length of query: 304 Effective length of database: 1,913,599 Effective search space: 581734096 Effective search space used: 581734096 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 55 (25.4 bits)