RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780357|ref|YP_003064770.1| hypothetical protein
CLIBASIA_01210 [Candidatus Liberibacter asiaticus str. psy62]
         (394 letters)



>d1hyoa1 b.34.8.1 (A:1-118) Fumarylacetoacetate hydrolase, FAH,
           N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 118

 Score = 29.2 bits (65), Expect = 0.55
 Identities = 8/33 (24%), Positives = 15/33 (45%), Gaps = 4/33 (12%)

Query: 140 SLDNIPFGVMAWGLDIIIHIAHRISVAHNEFCI 172
            + N+P+GV +       +   RI VA  +  +
Sbjct: 13  PIQNLPYGVFSTQ----SNPKPRIGVAIGDQIL 41


>d1i4ua_ b.60.1.1 (A:) Alpha-crustacyanin {European lobster (Homarus
           gammarus) [TaxId: 6707]}
          Length = 181

 Score = 29.0 bits (64), Expect = 0.72
 Identities = 9/82 (10%), Positives = 22/82 (26%), Gaps = 4/82 (4%)

Query: 15  TTIEGIARLSPPSGPA----FPGLFDFNFSSYYKGISAIGYFYSIPKMIYSSESHNTWTW 70
               G    +P   P     +   F           S     YS     +   S  ++ +
Sbjct: 77  LKRNGKLYPNPFGEPHLSIDYENSFAAPLVILETDYSNYACLYSCIDYNFGYHSDFSFIF 136

Query: 71  KKISSIKQSFLNEIRANIGTYG 92
            + +++   ++ +  A      
Sbjct: 137 SRSANLADQYVKKCEAAFKNIN 158


>d1ocka_ c.117.1.1 (A:) Malonamidase E2 {Bradyrhizobium japonicum
           [TaxId: 375]}
          Length = 412

 Score = 25.9 bits (55), Expect = 5.6
 Identities = 8/60 (13%), Positives = 18/60 (30%), Gaps = 16/60 (26%)

Query: 108 PVYGLIANILAIPILSFVVIPAGLIAILLMILSLDNIPFGVM----AWGLDIIIHIAHRI 163
           P Y  +  ++  P ++   +P            +  +P GV            +  A  +
Sbjct: 359 PRYNRLWTLMGNPCVN---VPVL---------KVGGLPIGVQVIARFGNDAHALATAWFL 406


>d2g0da1 a.102.6.1 (A:7-415) Nisin biosynthesis protein NisC
           {Lactococcus lactis [TaxId: 1358]}
          Length = 409

 Score = 26.0 bits (56), Expect = 5.9
 Identities = 13/70 (18%), Positives = 20/70 (28%)

Query: 35  FDFNFSSYYKGISAIGYFYSIPKMIYSSESHNTWTWKKISSIKQSFLNEIRANIGTYGSA 94
           FDF   +   G+  I    +  K   +S+ +       I  I              Y  A
Sbjct: 26  FDFGELTLSTGLPGIILMLAELKNKDNSKIYQKKIDNYIEYIVSKLSTYGLLTGSLYSGA 85

Query: 95  SASIFLIKHF 104
           +     I H 
Sbjct: 86  AGIALSILHL 95


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.325    0.141    0.425 

Gapped
Lambda     K      H
   0.267   0.0442    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,508,709
Number of extensions: 72539
Number of successful extensions: 216
Number of sequences better than 10.0: 1
Number of HSP's gapped: 216
Number of HSP's successfully gapped: 11
Length of query: 394
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 307
Effective length of database: 1,213,086
Effective search space: 372417402
Effective search space used: 372417402
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 54 (25.3 bits)