Query gi|254780359|ref|YP_003064772.1| GTP cyclohydrolase II protein (riboflavin biosynthesis) [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 210
No_of_seqs 114 out of 1786
Neff 5.2
Searched_HMMs 39220
Date Sun May 29 16:49:11 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780359.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK12485 bifunctional 3,4-dihy 100.0 0 0 587.7 22.0 203 7-209 1-203 (369)
2 PRK09311 bifunctional 3,4-dihy 100.0 0 0 579.0 22.3 204 6-209 1-204 (400)
3 PRK09319 bifunctional 3,4-dihy 100.0 0 0 578.1 22.4 204 6-209 2-207 (552)
4 PRK09314 bifunctional 3,4-dihy 100.0 0 0 574.3 22.8 202 7-209 1-202 (339)
5 TIGR00506 ribB 3,4-dihydroxy-2 100.0 0 0 580.2 15.6 197 9-205 2-230 (230)
6 PRK00910 ribB 3,4-dihydroxy-2- 100.0 0 0 564.0 23.0 203 8-210 13-215 (218)
7 PRK00014 ribB 3,4-dihydroxy-2- 100.0 0 0 560.4 23.2 201 9-209 18-218 (230)
8 COG0108 RibB 3,4-dihydroxy-2-b 100.0 0 0 558.3 22.9 203 7-210 1-203 (203)
9 PRK03353 ribB 3,4-dihydroxy-2- 100.0 0 0 558.4 22.8 203 7-209 11-213 (217)
10 PRK01792 ribB 3,4-dihydroxy-2- 100.0 0 0 554.9 23.8 204 7-210 11-214 (214)
11 PRK09318 bifunctional 3,4-dihy 100.0 0 0 527.9 20.7 189 12-209 1-189 (387)
12 pfam00926 DHBP_synthase 3,4-di 100.0 0 0 523.3 20.5 193 12-205 1-193 (193)
13 PRK05773 3,4-dihydroxy-2-butan 100.0 0 0 506.1 21.7 194 10-207 2-218 (218)
14 KOG1284 consensus 100.0 0 0 338.6 6.2 204 6-209 60-268 (357)
15 PRK08815 GTP cyclohydrolase; P 100.0 7E-39 1.8E-43 264.8 13.3 153 9-209 18-170 (376)
16 TIGR00644 recJ single-stranded 93.1 0.24 6.1E-06 29.7 5.2 97 6-119 40-139 (705)
17 KOG3009 consensus 91.6 1.3 3.2E-05 25.1 7.5 163 13-198 30-203 (614)
18 PRK11070 ssDNA exonuclease Rec 87.9 1.6 4E-05 24.5 5.5 93 9-117 55-149 (574)
19 COG1560 HtrB Lauroyl/myristoyl 84.1 4 0.0001 22.0 6.8 92 10-119 182-276 (308)
20 cd07985 LPLAT_GPAT Lysophospho 82.2 2.8 7.1E-05 23.0 4.6 153 9-168 8-196 (235)
21 PRK00509 argininosuccinate syn 79.1 5.6 0.00014 21.1 5.3 21 176-196 147-167 (398)
22 TIGR02407 ectoine_ectB diamino 77.4 3.3 8.3E-05 22.6 3.6 68 125-196 154-232 (413)
23 TIGR01418 PEP_synth phosphoeno 74.4 2 5.1E-05 23.9 1.9 89 11-112 418-509 (877)
24 pfam06794 UPF0270 Uncharacteri 70.5 5.6 0.00014 21.1 3.5 27 5-32 33-59 (70)
25 PRK13820 argininosuccinate syn 63.3 11 0.00028 19.3 3.8 132 39-196 8-165 (395)
26 PRK04966 hypothetical protein; 62.1 14 0.00036 18.6 4.1 36 4-43 32-67 (72)
27 PRK00574 gltX glutamyl-tRNA sy 60.2 7 0.00018 20.5 2.3 81 91-171 198-281 (489)
28 TIGR00789 flhB_rel FlhB domain 60.2 7.5 0.00019 20.3 2.5 36 175-210 23-58 (84)
29 PTZ00336 elongation factor 1-a 58.1 17 0.00044 18.0 5.3 59 134-192 113-182 (449)
30 PRK00304 hypothetical protein; 58.0 13 0.00032 18.9 3.3 26 6-32 33-58 (75)
31 PRK08462 biotin carboxylase; V 56.3 15 0.00038 18.4 3.5 28 149-176 257-284 (446)
32 pfam11305 DUF3107 Protein of u 55.8 14 0.00036 18.6 3.2 34 10-47 23-58 (74)
33 cd03110 Fer4_NifH_child This p 54.7 20 0.0005 17.7 5.4 46 149-197 131-176 (179)
34 TIGR00513 accA acetyl-CoA carb 52.5 20 0.00051 17.6 3.6 54 121-177 152-210 (329)
35 PRK06130 3-hydroxybutyryl-CoA 52.0 22 0.00055 17.4 3.9 62 102-170 114-180 (310)
36 COG1038 PycA Pyruvate carboxyl 48.8 24 0.00062 17.1 6.1 48 143-196 115-162 (1149)
37 COG2873 MET17 O-acetylhomoseri 48.6 24 0.00062 17.1 4.1 33 164-196 148-181 (426)
38 COG0399 WecE Predicted pyridox 47.5 19 0.00048 17.8 2.8 101 10-119 83-210 (374)
39 PRK03643 altronate oxidoreduct 47.4 18 0.00047 17.8 2.8 44 160-208 159-203 (482)
40 PRK13122 consensus 46.9 6.7 0.00017 20.6 0.4 14 58-71 104-117 (242)
41 COG3049 Penicillin V acylase a 46.9 26 0.00066 16.9 3.7 44 9-52 133-176 (353)
42 pfam04472 DUF552 Protein of un 46.5 21 0.00054 17.5 3.0 44 6-63 6-49 (73)
43 PRK05586 biotin carboxylase; V 45.9 27 0.00068 16.8 4.6 29 149-177 255-283 (447)
44 LOAD_Toprim consensus 45.3 23 0.0006 17.2 3.0 28 10-37 34-61 (98)
45 pfam05198 IF3_N Translation in 44.9 21 0.00053 17.5 2.7 31 169-199 15-48 (76)
46 TIGR03588 PseC UDP-4-keto-6-de 44.0 22 0.00056 17.4 2.7 97 12-119 80-211 (380)
47 COG3563 KpsC Capsule polysacch 43.5 17 0.00043 18.1 2.1 22 179-200 371-392 (671)
48 TIGR01090 apt adenine phosphor 43.3 15 0.00039 18.4 1.8 96 58-176 59-158 (175)
49 PRK12410 glutamyl-tRNA synthet 42.7 30 0.00076 16.5 3.7 77 91-171 180-262 (433)
50 pfam02603 Hpr_kinase_N HPr Ser 41.6 31 0.0008 16.4 4.0 69 125-198 43-111 (127)
51 cd01999 Argininosuccinate_Synt 40.5 33 0.00083 16.3 3.7 32 163-196 133-164 (385)
52 PRK13121 consensus 40.2 13 0.00032 18.9 1.0 22 58-79 123-151 (265)
53 TIGR00709 dat 2,4-diaminobutyr 39.0 34 0.00087 16.2 3.1 36 162-197 206-246 (445)
54 pfam04471 Mrr_cat Restriction 38.6 17 0.00044 18.0 1.5 23 181-203 76-98 (98)
55 TIGR01051 topA_bact DNA topois 38.4 32 0.00082 16.3 2.9 30 8-37 76-105 (688)
56 PRK13136 consensus 36.9 8 0.0002 20.1 -0.4 22 58-79 116-144 (253)
57 TIGR01825 gly_Cac_T_rel pyrido 36.8 18 0.00046 17.9 1.4 21 175-195 181-201 (392)
58 TIGR00705 SppA_67K signal pept 36.7 33 0.00084 16.3 2.7 83 8-118 117-220 (614)
59 PRK10949 protease 4; Provision 36.5 37 0.00095 15.9 3.4 93 9-117 131-232 (618)
60 PRK06464 phosphoenolpyruvate s 36.4 36 0.00092 16.0 2.9 43 36-80 385-432 (794)
61 PRK11658 UDP-4-amino-4-deoxy-L 36.4 34 0.00088 16.1 2.7 106 12-119 84-208 (379)
62 TIGR00389 glyS_dimeric glycyl- 36.3 5.7 0.00015 21.0 -1.3 23 87-116 562-584 (606)
63 pfam03437 BtpA BtpA family. Th 36.2 38 0.00096 15.9 8.3 159 12-199 28-207 (254)
64 PRK08268 3-hydroxybutyryl-CoA 36.2 38 0.00097 15.9 3.7 30 46-77 209-238 (503)
65 PRK13112 consensus 36.1 6.8 0.00017 20.5 -0.9 48 58-107 124-188 (279)
66 PRK13138 consensus 35.3 9.2 0.00024 19.7 -0.3 21 58-78 119-148 (264)
67 PRK05428 HPr kinase/phosphoryl 35.2 39 0.001 15.8 4.0 18 184-201 197-214 (308)
68 PRK00028 infC translation init 35.1 33 0.00085 16.2 2.5 122 23-168 18-154 (175)
69 PRK13135 consensus 35.0 7.2 0.00018 20.4 -0.9 17 58-74 122-138 (267)
70 KOG0875 consensus 34.3 38 0.00098 15.8 2.7 85 12-106 61-158 (264)
71 PRK06111 acetyl-CoA carboxylas 34.3 41 0.001 15.7 3.1 30 148-177 254-283 (449)
72 pfam07905 PucR Purine cataboli 33.9 41 0.0011 15.6 6.4 74 124-204 36-110 (122)
73 COG0246 MtlD Mannitol-1-phosph 33.5 40 0.001 15.7 2.7 46 155-207 157-203 (473)
74 pfam11195 DUF2829 Protein of u 33.2 32 0.00082 16.3 2.2 18 11-28 2-19 (75)
75 PRK13124 consensus 33.0 10 0.00026 19.4 -0.4 57 8-73 69-129 (257)
76 COG4130 Predicted sugar epimer 32.9 43 0.0011 15.5 3.4 14 70-83 25-38 (272)
77 PRK10634 putative ribosome mat 32.7 43 0.0011 15.5 3.6 63 5-73 3-70 (190)
78 TIGR01326 OAH_OAS_sulfhy O-ace 32.6 43 0.0011 15.5 3.7 41 156-196 136-179 (434)
79 COG3089 Uncharacterized protei 32.5 43 0.0011 15.5 3.1 23 9-31 36-58 (72)
80 cd00617 Tnase_like Tryptophana 32.5 44 0.0011 15.5 3.5 20 177-196 171-190 (431)
81 pfam09363 XFP_C XFP C-terminal 31.5 45 0.0012 15.4 4.4 54 4-57 2-60 (203)
82 COG2257 Uncharacterized homolo 31.3 45 0.0011 15.4 2.7 37 174-210 27-63 (92)
83 pfam00764 Arginosuc_synth Argi 30.4 47 0.0012 15.3 5.2 16 180-195 145-160 (389)
84 PRK11706 TDP-4-oxo-6-deoxy-D-g 30.0 48 0.0012 15.2 4.1 145 11-162 81-249 (375)
85 COG0137 ArgG Argininosuccinate 29.9 43 0.0011 15.5 2.4 135 38-196 8-169 (403)
86 PRK07178 acetyl-CoA carboxylas 29.7 48 0.0012 15.2 3.4 24 149-172 254-277 (471)
87 TIGR01743 purR_Bsub pur operon 29.3 42 0.0011 15.6 2.2 67 64-131 140-208 (269)
88 TIGR02281 DTGA conserved hypot 28.9 29 0.00073 16.6 1.3 59 37-98 10-74 (121)
89 pfam12163 HobA DNA replication 28.8 50 0.0013 15.1 2.9 28 11-38 32-59 (180)
90 TIGR00337 PyrG CTP synthase; I 28.7 38 0.00097 15.9 1.9 24 183-206 393-421 (571)
91 PRK13115 consensus 28.6 17 0.00043 18.1 0.1 11 59-69 129-139 (269)
92 PRK08269 3-hydroxybutyryl-CoA 28.6 51 0.0013 15.1 6.5 52 114-165 120-176 (311)
93 TIGR01235 pyruv_carbox pyruvat 28.4 47 0.0012 15.3 2.4 66 124-196 78-160 (1169)
94 cd05017 SIS_PGI_PMI_1 The memb 28.4 51 0.0013 15.1 4.8 48 145-200 51-98 (119)
95 TIGR01977 am_tr_V_EF2568 cyste 28.2 51 0.0013 15.0 4.8 60 11-70 286-352 (384)
96 pfam11116 DUF2624 Protein of u 27.8 42 0.0011 15.6 2.0 38 171-208 7-46 (84)
97 cd07986 LPLAT_ACT14924-like Ly 27.3 53 0.0014 14.9 3.1 27 142-169 118-144 (210)
98 pfam04800 ETC_C1_NDUFA4 ETC co 27.0 53 0.0013 15.0 2.4 20 180-199 57-76 (101)
99 KOG0091 consensus 26.7 55 0.0014 14.9 5.6 80 108-199 68-154 (213)
100 PRK13123 consensus 26.5 17 0.00043 18.1 -0.2 21 58-78 118-145 (256)
101 TIGR01278 DPOR_BchB light-inde 26.5 45 0.0012 15.4 2.0 21 182-202 535-555 (562)
102 pfam00282 Pyridoxal_deC Pyrido 25.8 57 0.0014 14.8 5.4 50 146-195 176-226 (370)
103 cd03814 GT1_like_2 This family 25.7 57 0.0015 14.8 3.9 66 137-209 200-268 (364)
104 COG4815 Uncharacterized protei 25.4 43 0.0011 15.6 1.7 31 18-51 74-104 (145)
105 KOG0098 consensus 25.0 56 0.0014 14.8 2.2 55 145-199 90-149 (216)
106 PRK13237 tyrosine phenol-lyase 24.7 59 0.0015 14.7 3.5 20 177-196 196-215 (459)
107 PRK13238 tnaA tryptophanase; P 24.7 60 0.0015 14.6 3.4 20 177-196 196-215 (461)
108 pfam05225 HTH_psq helix-turn-h 24.4 57 0.0015 14.8 2.2 15 9-23 2-16 (45)
109 KOG1706 consensus 24.4 43 0.0011 15.5 1.6 37 11-47 44-81 (412)
110 PRK13139 consensus 24.1 19 0.00048 17.8 -0.3 14 58-71 121-134 (254)
111 PRK13134 consensus 23.7 18 0.00045 17.9 -0.5 13 58-70 124-136 (257)
112 smart00685 DM14 Repeats in fly 23.7 44 0.0011 15.4 1.5 18 10-27 35-52 (59)
113 COG1926 Predicted phosphoribos 23.7 62 0.0016 14.5 4.5 140 65-208 38-211 (220)
114 pfam00145 DNA_methylase C-5 cy 23.5 20 0.0005 17.7 -0.3 26 107-132 268-293 (319)
115 PRK05370 argininosuccinate syn 23.5 63 0.0016 14.5 3.1 145 14-195 3-183 (447)
116 COG1973 HypE Hydrogenase matur 23.4 63 0.0016 14.5 3.7 52 150-201 147-203 (449)
117 PRK13132 consensus 23.3 18 0.00047 17.8 -0.5 57 7-72 70-128 (246)
118 TIGR01804 BADH betaine aldehyd 23.0 64 0.0016 14.4 2.7 110 18-143 246-361 (471)
119 TIGR02720 pyruv_oxi_spxB pyruv 23.0 64 0.0016 14.4 2.4 10 70-79 221-230 (577)
120 CHL00199 infC translation init 22.9 64 0.0016 14.4 2.4 118 22-157 24-148 (182)
121 pfam04227 Indigoidine_A Indigo 22.9 64 0.0016 14.4 9.1 161 14-198 2-174 (293)
122 TIGR00858 bioF 8-amino-7-oxono 22.9 46 0.0012 15.3 1.5 19 51-69 247-266 (378)
123 PTZ00337 surface protease GP63 22.8 62 0.0016 14.6 2.1 69 37-112 113-186 (567)
124 PRK05973 replicative DNA helic 22.7 48 0.0012 15.2 1.5 22 182-203 173-194 (237)
125 TIGR01404 FlhB_rel_III type II 22.2 67 0.0017 14.3 2.5 55 148-206 265-321 (346)
126 cd03361 TOPRIM_TopoIA_RevGyr T 22.0 67 0.0017 14.3 3.2 42 106-162 104-145 (170)
127 TIGR00453 ispD 2-C-methyl-D-er 21.1 70 0.0018 14.2 2.8 41 8-59 80-123 (226)
128 PRK06129 3-hydroxyacyl-CoA deh 21.0 70 0.0018 14.2 3.7 68 102-171 118-185 (308)
129 PRK11630 hypothetical protein; 20.9 71 0.0018 14.2 3.1 61 8-74 13-78 (206)
130 COG0482 TrmU Predicted tRNA(5- 20.9 44 0.0011 15.5 1.0 128 67-197 55-187 (356)
131 pfam04531 Phage_holin_1 Bacter 20.7 59 0.0015 14.7 1.6 20 92-114 60-79 (84)
132 cd02037 MRP-like MRP (Multiple 20.7 71 0.0018 14.1 3.9 139 12-197 18-163 (169)
133 cd01993 Alpha_ANH_like_II This 20.2 73 0.0019 14.1 2.6 19 179-197 158-176 (185)
No 1
>PRK12485 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=100.00 E-value=0 Score=587.69 Aligned_cols=203 Identities=43% Similarity=0.759 Sum_probs=201.6
Q ss_pred CCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEEHHHCCHHHHHHHHHHCCCCEEEECCHHHHHHHHCCCCCCCCCCC
Q ss_conf 79566999999996898299996778988701334844599999999997089945861468999874036432445665
Q gi|254780359|r 7 LDERYIEDVIQSFQKGEMVIVTDADDRENEADLVLAAIHCTSEKMAFIIRHTCGIVCTPMPFHTAHKLKLNPMVLENESV 86 (210)
Q Consensus 7 ~~~~~ie~ai~al~~G~~Viv~D~~dREnEgDlv~~Ae~vt~e~i~fm~~~~~Glic~al~~~~~~~L~Lp~m~~~n~~~ 86 (210)
|.|++||+||++||+||||||+||+|||||||||+|||++|||+||||++|++|+||+|+++++|++|+||+|+..|++.
T Consensus 1 m~~~~ie~ai~~~~~Gk~vivvDdedREnegdli~aAe~~t~e~infm~~~~~Glic~~~~~~~~~~L~l~~m~~~n~~~ 80 (369)
T PRK12485 1 MAFNTIEEIIEDYRQGKMVLLVDDEDRENEGDLLLAAERCDAQAINFMAREARGLICLTLTDEHCQRLGLEQMVPSNGSV 80 (369)
T ss_pred CCCCCHHHHHHHHHCCCEEEEEECCCCCCHHHEEEEHHHCCHHHHHHHHHHCCCCEEEECCHHHHHHCCCCCCCCCCCCC
T ss_conf 99788999999998899399996899876050153763389999999999598558976899999767997644777886
Q ss_pred CCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEE
Q ss_conf 66521788720347778999889999999998420132431389850010012698246678026776998876996005
Q gi|254780359|r 87 HKTAFTVSVDSKHGITTGISADDRAYTIKNLANPHSIADNFVRPGHIFPLISRDGGVLVRPGHTEASVDLCKITGLPPIA 166 (210)
Q Consensus 87 ~~taFtvsvd~~~g~tTGISa~DRa~TIr~la~~~~~~~df~~PGHV~pL~a~~gGvl~R~GHTEaavdL~~lAGl~P~~ 166 (210)
++|+||||||+++|+||||||+|||+||++|++++++|+||++|||||||+|++||||+|+|||||+||||||||++|++
T Consensus 81 ~~t~ftvsvd~~~g~tTGiSA~dRa~Ti~~~~~~~~~~~df~~PGHvfPL~a~~GGvl~R~GHTEa~vdL~~lAg~~p~~ 160 (369)
T PRK12485 81 FSTAFTVSIEAATGVTTGISAADRARTVAAAVAPNARPEDLVQPGHIFPLRAREGGVLTRAGHTEAGCDLARLAGFSPAS 160 (369)
T ss_pred CCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHCCCCCCEEEEEECCCCEEECCCCHHHHHHHHHHCCCCCCE
T ss_conf 77870452000478978729899999999984799987883878752426874598764278438999999974999827
Q ss_pred EEEEEECCCCCCCCHHHHHHHHHHHCCCEEEHHHHHHHHHHCC
Q ss_conf 9888536887505989999999983890777999999998437
Q gi|254780359|r 167 VICELVNDDGTIKKGKQVIEFSKKYDLKIISVQDLIAWRKKKE 209 (210)
Q Consensus 167 vi~Eil~~~G~~~~~~~~~~fA~~~~lp~i~i~dli~yr~~~e 209 (210)
|||||||+||+||+++++.+||++|+|++++|+|||+||+++|
T Consensus 161 vicEi~~~DGtMaR~~~L~~FA~kH~Lki~tI~DLI~YR~~~E 203 (369)
T PRK12485 161 VIVEVMNDDGTMARRPDLEVFAAKHGIKIGTIADLIHYRLSTE 203 (369)
T ss_pred EEEEEECCCCCCCCHHHHHHHHHHCCCCEEEHHHHHHHHHHCC
T ss_conf 9999865888570258999999973784889999999998546
No 2
>PRK09311 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=100.00 E-value=0 Score=579.05 Aligned_cols=204 Identities=51% Similarity=0.850 Sum_probs=202.1
Q ss_pred CCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEEHHHCCHHHHHHHHHHCCCCEEEECCHHHHHHHHCCCCCCCCCC
Q ss_conf 77956699999999689829999677898870133484459999999999708994586146899987403643244566
Q gi|254780359|r 6 SLDERYIEDVIQSFQKGEMVIVTDADDRENEADLVLAAIHCTSEKMAFIIRHTCGIVCTPMPFHTAHKLKLNPMVLENES 85 (210)
Q Consensus 6 ~~~~~~ie~ai~al~~G~~Viv~D~~dREnEgDlv~~Ae~vt~e~i~fm~~~~~Glic~al~~~~~~~L~Lp~m~~~n~~ 85 (210)
.|.|++||+||++||+|+||||+||+|||||||||+|||++||++|+||++|++|++|+|+++++|++|+||+|+..|.+
T Consensus 1 ~m~~~~ie~ai~~~~~G~~viv~Ddedrenegdlv~aae~~t~e~i~fm~~~~~Glic~~~~~~~~~~l~l~~m~~~n~~ 80 (400)
T PRK09311 1 MMTLASIEEAIADIAAGKMVIVVDDEDRENEGDLIFAAEKVTPEAINFMARHGRGLICLPLTEERCDRLDLPPMVARNGD 80 (400)
T ss_pred CCCCCCHHHHHHHHHCCCEEEEEECCCCCCCCCEEEEHHHCCHHHHHHHHHHCCCCEEEECCHHHHHHCCCCCCCCCCCC
T ss_conf 98755799999999879959998289987610568784129999999999868966584189999966799866676788
Q ss_pred CCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHCCCCCE
Q ss_conf 56652178872034777899988999999999842013243138985001001269824667802677699887699600
Q gi|254780359|r 86 VHKTAFTVSVDSKHGITTGISADDRAYTIKNLANPHSIADNFVRPGHIFPLISRDGGVLVRPGHTEASVDLCKITGLPPI 165 (210)
Q Consensus 86 ~~~taFtvsvd~~~g~tTGISa~DRa~TIr~la~~~~~~~df~~PGHV~pL~a~~gGvl~R~GHTEaavdL~~lAGl~P~ 165 (210)
.++|+|||||||++|+||||||+|||+||++|++++++|+||++|||||||+|++|||++|+|||||+||||||||+.|+
T Consensus 81 ~~~t~ftvsvd~~~g~tTGISA~dRa~Ti~~~~~~~~~~~D~~~PGHvfPL~A~~GGVl~R~GHTEAavDLarLAGl~pa 160 (400)
T PRK09311 81 RHGTAFTVSIDAAEGVTTGISAADRARTIQLLADPDAKPEDFVRPGHIFPLRAQPGGVLRRAGHTEAAVDLARLAGLEPA 160 (400)
T ss_pred CCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCHHHHCCCCCEEEEEECCCCEEECCCCHHHHHHHHHHCCCCCC
T ss_conf 78876466654057877772999999989986154578788466871442673579766426844999999997299971
Q ss_pred EEEEEEECCCCCCCCHHHHHHHHHHHCCCEEEHHHHHHHHHHCC
Q ss_conf 59888536887505989999999983890777999999998437
Q gi|254780359|r 166 AVICELVNDDGTIKKGKQVIEFSKKYDLKIISVQDLIAWRKKKE 209 (210)
Q Consensus 166 ~vi~Eil~~~G~~~~~~~~~~fA~~~~lp~i~i~dli~yr~~~e 209 (210)
+|||||||+||+|||++++.+||++|+||+++|+|||+||+++|
T Consensus 161 ~VIcEImndDGtMAR~~dL~~FA~kH~Lki~tIaDLI~YR~~~E 204 (400)
T PRK09311 161 GVICEIVNDDGTMARLPELIEFADEHGLKIITIADLIAYRRRTE 204 (400)
T ss_pred EEEEEEECCCCCCCCHHHHHHHHHHCCCCEEEHHHHHHHHHHCC
T ss_conf 89999866998546579999999874777778999999987246
No 3
>PRK09319 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=100.00 E-value=0 Score=578.07 Aligned_cols=204 Identities=43% Similarity=0.743 Sum_probs=200.8
Q ss_pred CCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEEHHHCCHHHHHHHHHHCCCCEEEECCHHHHHHHHCCCCCCCCCC
Q ss_conf 77956699999999689829999677898870133484459999999999708994586146899987403643244566
Q gi|254780359|r 6 SLDERYIEDVIQSFQKGEMVIVTDADDRENEADLVLAAIHCTSEKMAFIIRHTCGIVCTPMPFHTAHKLKLNPMVLENES 85 (210)
Q Consensus 6 ~~~~~~ie~ai~al~~G~~Viv~D~~dREnEgDlv~~Ae~vt~e~i~fm~~~~~Glic~al~~~~~~~L~Lp~m~~~n~~ 85 (210)
+++|++|++||++||+|++|||+||+|||||||||++||++|||.||||++|++|+||+||+.++|++|+||+|+..|++
T Consensus 2 ~~~F~sIe~Ai~~lk~Gk~VIVvDDedRENEGDLI~aAe~~Tpe~inFM~~~~rGliC~~m~~~~~~~L~Lp~Mv~~N~d 81 (552)
T PRK09319 2 KIEFDSIDDALAAIRNGECVVVVDDENRENEGDLICAAQFATPEQINFMATEARGLICLAMTGERLDELDLPLMVDRNTD 81 (552)
T ss_pred CCCCCCHHHHHHHHHCCCEEEEECCCCCCCCCCEEEEHHHCCHHHHHHHHHHCCEEEEEECCHHHHHHCCCCCCCCCCCC
T ss_conf 62038899999999879939997789987623147444338999999999868846994389999955599855577899
Q ss_pred CCCCCEEEEEECC--CCCCCCCCHHHHHHHHHHHHHHHCCHHHHCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHCCCC
Q ss_conf 5665217887203--47778999889999999998420132431389850010012698246678026776998876996
Q gi|254780359|r 86 VHKTAFTVSVDSK--HGITTGISADDRAYTIKNLANPHSIADNFVRPGHIFPLISRDGGVLVRPGHTEASVDLCKITGLP 163 (210)
Q Consensus 86 ~~~taFtvsvd~~--~g~tTGISa~DRa~TIr~la~~~~~~~df~~PGHV~pL~a~~gGvl~R~GHTEaavdL~~lAGl~ 163 (210)
.++|+||||||+. .|+||||||.|||+||++++||+++|+||++|||||||+|++||||+|+|||||+||||||||+.
T Consensus 82 ~~~TaFTVSvDaa~~~g~tTGISA~DRa~Ti~~l~~~~~~p~Df~rPGHvFPL~A~~GGVL~R~GHTEAaVDLarLAGl~ 161 (552)
T PRK09319 82 SNQTAFTVSIDAGPELGVSTGISAEDRARTIQVAINPNTKPEDLRRPGHIFPLRAKKGGVLKRAGHTEAAVDLARLAGLY 161 (552)
T ss_pred CCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHCCCCCCEEEEEECCCCEEECCCCCHHHHHHHHHCCCC
T ss_conf 88897499996567899988618999999999995799997775999863006753698824478618999999974999
Q ss_pred CEEEEEEEECCCCCCCCHHHHHHHHHHHCCCEEEHHHHHHHHHHCC
Q ss_conf 0059888536887505989999999983890777999999998437
Q gi|254780359|r 164 PIAVICELVNDDGTIKKGKQVIEFSKKYDLKIISVQDLIAWRKKKE 209 (210)
Q Consensus 164 P~~vi~Eil~~~G~~~~~~~~~~fA~~~~lp~i~i~dli~yr~~~e 209 (210)
|++||||||++||+||+++++.+||++|+||+++|+|||+||+++|
T Consensus 162 P~gVicEI~n~DGtMaR~~~L~~FA~~h~L~iisI~dLI~YR~~~E 207 (552)
T PRK09319 162 PAGVICEIQNPDGSMARLPQLKEYARQWGLKLISIADLISYRLQNE 207 (552)
T ss_pred CEEEEEEEECCCCCCCCHHHHHHHHHHCCCCEEEHHHHHHHHHHCC
T ss_conf 7189999977998652489999999985996989999999998556
No 4
>PRK09314 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=100.00 E-value=0 Score=574.32 Aligned_cols=202 Identities=53% Similarity=0.866 Sum_probs=200.0
Q ss_pred CCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEEHHHCCHHHHHHHHHHCCCCEEEECCHHHHHHHHCCCCCCCCCCC
Q ss_conf 79566999999996898299996778988701334844599999999997089945861468999874036432445665
Q gi|254780359|r 7 LDERYIEDVIQSFQKGEMVIVTDADDRENEADLVLAAIHCTSEKMAFIIRHTCGIVCTPMPFHTAHKLKLNPMVLENESV 86 (210)
Q Consensus 7 ~~~~~ie~ai~al~~G~~Viv~D~~dREnEgDlv~~Ae~vt~e~i~fm~~~~~Glic~al~~~~~~~L~Lp~m~~~n~~~ 86 (210)
|+|++||+||++||+|+||||+||+|||||||||+|||++|||+||||++|++|+||+|+++++|++|+||+|+..|++.
T Consensus 1 M~~~sie~ai~~~~~Gk~vivvDdedREnEGDli~aAe~~t~e~infm~~~~~GliC~~~~~~~~~~L~L~~m~~~n~~~ 80 (339)
T PRK09314 1 MALKRVEEAIEDIKNGKMLIMMDDEDRENEGDLVYAAIFSTPEKVNFMATHARGLICVALTKDLAKKLELPPMVSKNTSN 80 (339)
T ss_pred CCCCCHHHHHHHHHCCCEEEEEECCCCCCHHCEEEEHHHCCHHHHHHHHHHCCCCEEEECCHHHHHHCCCCCCCCCCCCC
T ss_conf 99776999999998799699993899876132898843389999999999789719961799999617997474768887
Q ss_pred CCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEE
Q ss_conf 66521788720347778999889999999998420132431389850010012698246678026776998876996005
Q gi|254780359|r 87 HKTAFTVSVDSKHGITTGISADDRAYTIKNLANPHSIADNFVRPGHIFPLISRDGGVLVRPGHTEASVDLCKITGLPPIA 166 (210)
Q Consensus 87 ~~taFtvsvd~~~g~tTGISa~DRa~TIr~la~~~~~~~df~~PGHV~pL~a~~gGvl~R~GHTEaavdL~~lAGl~P~~ 166 (210)
++|+|||||||+++ ||||||+|||.||+.|++++++|+||++|||||||+|++||||+|+|||||+||||+|||+.|++
T Consensus 81 ~~taftvsvd~~~~-tTGISA~dRa~Ti~~l~~~~~~~~df~~PGHvfPL~a~~gGVl~R~GHTEA~vdL~~lAG~~p~~ 159 (339)
T PRK09314 81 HETAFTVSIDAKEA-TTGISAFERDMTIRLLADDTSKPSDFVRPGHIFPLIAKDGGVLVRTGHTEGSVDLCKLAGLKPVA 159 (339)
T ss_pred CCCCEEEEECCCCC-CCCCCHHHHHHHHHHHHCCCCCHHHCCCCCEEEEEEECCCCEEECCCCHHHHHHHHHHCCCCCEE
T ss_conf 77742889536889-89959999999999986899987893889705358875698744277168999999985998649
Q ss_pred EEEEEECCCCCCCCHHHHHHHHHHHCCCEEEHHHHHHHHHHCC
Q ss_conf 9888536887505989999999983890777999999998437
Q gi|254780359|r 167 VICELVNDDGTIKKGKQVIEFSKKYDLKIISVQDLIAWRKKKE 209 (210)
Q Consensus 167 vi~Eil~~~G~~~~~~~~~~fA~~~~lp~i~i~dli~yr~~~e 209 (210)
||||||++||+||+++++.+||++|+||+++|+|||+||+++|
T Consensus 160 vi~Ei~~~dG~mar~~~l~~fa~~h~LkiiTIaDLI~YR~~~E 202 (339)
T PRK09314 160 VICEIVKEDGTMARRDDLEIFAKKHNLKMIYVSDLIEYRLKNE 202 (339)
T ss_pred EEEEEECCCCCCCCHHHHHHHHHHCCCEEEEHHHHHHHHHHCC
T ss_conf 9999965889683489999999984983999999999998377
No 5
>TIGR00506 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase; InterPro: IPR000422 3,4-Dihydroxy-2-butanone 4-phosphate is biosynthesized from ribulose 5-phosphate and serves as the biosynthetic precursor for the xylene ring of riboflavin . It is sometimes found as a bifunctional enzyme with GTP cyclohydrolase II that catalyses the first committed step in the biosynthesis of riboflavin (IPR000926 from INTERPRO). No sequences with significant homology to DHBP synthase are found in the metazoa.; GO: 0008686 34-dihydroxy-2-butanone-4-phosphate synthase activity, 0009231 riboflavin biosynthetic process.
Probab=100.00 E-value=0 Score=580.22 Aligned_cols=197 Identities=47% Similarity=0.783 Sum_probs=184.3
Q ss_pred HHHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEEHHHCCHHHHHHHHHHCCCCEEEECCHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 56699999999689829999677898870133484459999999999708994586146899987403643244566566
Q gi|254780359|r 9 ERYIEDVIQSFQKGEMVIVTDADDRENEADLVLAAIHCTSEKMAFIIRHTCGIVCTPMPFHTAHKLKLNPMVLENESVHK 88 (210)
Q Consensus 9 ~~~ie~ai~al~~G~~Viv~D~~dREnEgDlv~~Ae~vt~e~i~fm~~~~~Glic~al~~~~~~~L~Lp~m~~~n~~~~~ 88 (210)
+..|++||+|||+|++|||+||||||||||||+|||++|||+||||++|||||||+||++++|++|+||+|+..|.+.++
T Consensus 2 ~~~i~~AL~Alk~G~~vlV~DdedREnEgDli~aAe~~tpE~i~~m~~~a~GLiC~~~t~~~~~kLdLP~Mv~~~~~~~~ 81 (230)
T TIGR00506 2 FERIEEALEALKKGEIVLVLDDEDRENEGDLIVAAEFITPEQIAFMRRHAGGLICVALTEDIADKLDLPLMVDVNTSASE 81 (230)
T ss_pred CHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHCCCCCCHHHHHHHHHHCCCEEEECCCHHHHHHCCCCCCCHHHHHHHC
T ss_conf 50689999998569559997368998755541012215888978766645865733377788974689735001002211
Q ss_pred ------------------CCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCC----------HHHHCCCCCCCEEEECC
Q ss_conf ------------------52178872034777899988999999999842013----------24313898500100126
Q gi|254780359|r 89 ------------------TAFTVSVDSKHGITTGISADDRAYTIKNLANPHSI----------ADNFVRPGHIFPLISRD 140 (210)
Q Consensus 89 ------------------taFtvsvd~~~g~tTGISa~DRa~TIr~la~~~~~----------~~df~~PGHV~pL~a~~ 140 (210)
++|||+|||+.+++|||||+||+.||+...++.++ |+||+||||||||+|+.
T Consensus 82 k~pvlrkl~p~Di~Yd~~~~fti~~~~r~et~TGIsa~DR~~Ti~~~l~~~~~~vmmgr~~dFG~df~rPGHvfpLRAa~ 161 (230)
T TIGR00506 82 KLPVLRKLTPDDIPYDEKSTFTIDVAHRKETTTGISANDRALTIRAALADVVKPVMMGRKEDFGSDFRRPGHVFPLRAAD 161 (230)
T ss_pred CCCCCCCCCCCCCCCCCEEEEEEEEECCCCCEECCCHHHHHHHHHHHHCCCCCEEECCCCCCCHHHCCCCCCCCHHHHCC
T ss_conf 35501000678678774237899974778850055464788999887467664222276245511436888654154327
Q ss_pred CCCCCCCCHHHHHHHHHHHCCCCCEEEEEEEECC--CCCCCCHHH--HHHHHHHHCCCEEEHHHHHHHH
Q ss_conf 9824667802677699887699600598885368--875059899--9999998389077799999999
Q gi|254780359|r 141 GGVLVRPGHTEASVDLCKITGLPPIAVICELVND--DGTIKKGKQ--VIEFSKKYDLKIISVQDLIAWR 205 (210)
Q Consensus 141 gGvl~R~GHTEaavdL~~lAGl~P~~vi~Eil~~--~G~~~~~~~--~~~fA~~~~lp~i~i~dli~yr 205 (210)
||||+|+||||||||||+||||+|++|||||||+ ||+|||.+| +.+||+||||++|+|+|||+||
T Consensus 162 GgVL~R~GHTEasVdL~~lAGl~pa~VICE~~nd~edG~mar~~ekf~~~yA~Kh~l~~i~i~dLi~Yr 230 (230)
T TIGR00506 162 GGVLKRAGHTEASVDLAELAGLKPAGVICEIMNDEEDGTMARKPEKFLVEYAKKHGLKLISIEDLIEYR 230 (230)
T ss_pred CCEECCCCCCHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCCEEHHHHHHCC
T ss_conf 875125773348889999708997289986237720331036664889999988198501178885119
No 6
>PRK00910 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase; Provisional
Probab=100.00 E-value=0 Score=564.00 Aligned_cols=203 Identities=44% Similarity=0.799 Sum_probs=200.4
Q ss_pred CHHHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEEHHHCCHHHHHHHHHHCCCCEEEECCHHHHHHHHCCCCCCCCCCCC
Q ss_conf 95669999999968982999967789887013348445999999999970899458614689998740364324456656
Q gi|254780359|r 8 DERYIEDVIQSFQKGEMVIVTDADDRENEADLVLAAIHCTSEKMAFIIRHTCGIVCTPMPFHTAHKLKLNPMVLENESVH 87 (210)
Q Consensus 8 ~~~~ie~ai~al~~G~~Viv~D~~dREnEgDlv~~Ae~vt~e~i~fm~~~~~Glic~al~~~~~~~L~Lp~m~~~n~~~~ 87 (210)
.+++||+||++||+|+||||+||+|||||||||+||+++||++|+||++|++|+||+|+++++|++|+||+|+..|.+.+
T Consensus 13 ~~s~Ie~Ai~al~~Gk~Viv~DdedREnEgDlv~aAe~~t~e~i~fm~~~~~GliC~~~~~~~~~~L~Lp~mv~~~~~~~ 92 (218)
T PRK00910 13 PITRVENALQALREGRGVLLLDDEDRENEGDIIYSVEHLTNAQMALMIRECSGIVCLCLTDEQANKLELPPMVVNNNSAN 92 (218)
T ss_pred CCCHHHHHHHHHHCCCEEEEEECCCCCCHHCEEEEHHHCCHHHHHHHHHHCCCCEEEECCHHHHHHCCCCCCCCCCCCCC
T ss_conf 84529999999988995999978998761416867664999999999995997199647999997779986567888878
Q ss_pred CCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEE
Q ss_conf 65217887203477789998899999999984201324313898500100126982466780267769988769960059
Q gi|254780359|r 88 KTAFTVSVDSKHGITTGISADDRAYTIKNLANPHSIADNFVRPGHIFPLISRDGGVLVRPGHTEASVDLCKITGLPPIAV 167 (210)
Q Consensus 88 ~taFtvsvd~~~g~tTGISa~DRa~TIr~la~~~~~~~df~~PGHV~pL~a~~gGvl~R~GHTEaavdL~~lAGl~P~~v 167 (210)
+|+||+|||+++|++|||||+|||+|||.|++++++|+||++|||||||++++|||++|+|||||+||||+|||++|++|
T Consensus 93 ~taftvsvda~~g~tTGISa~DRa~TIr~la~~~~~~~dF~~PGHVfPL~a~~GGvl~R~GHTEasVdLa~lAGl~P~av 172 (218)
T PRK00910 93 QTAFTVSIEAKHGVTTGVSAQDRVTTIKTAANPQAKPEDLARPGHVFPLRARPGGVLARRGHTEGTVDLMQMAGLQPAGV 172 (218)
T ss_pred CCCCEEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCHHHCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEE
T ss_conf 87626887604787688488999999999737899987758998215144367998646876999999999829997599
Q ss_pred EEEEECCCCCCCCHHHHHHHHHHHCCCEEEHHHHHHHHHHCCC
Q ss_conf 8885368875059899999999838907779999999984379
Q gi|254780359|r 168 ICELVNDDGTIKKGKQVIEFSKKYDLKIISVQDLIAWRKKKEI 210 (210)
Q Consensus 168 i~Eil~~~G~~~~~~~~~~fA~~~~lp~i~i~dli~yr~~~ei 210 (210)
|||||++||+||+++++++||++|+||+++|+|||+||+++|+
T Consensus 173 icEil~~dG~ma~~~~l~~fA~~h~l~~isi~dli~yR~~~~~ 215 (218)
T PRK00910 173 LCELTNPDGTMAKTPEIIAFGKLHNMPVLTIEDMVMYRNQFDL 215 (218)
T ss_pred EEEEECCCCCCCCHHHHHHHHHHCCCCEEEHHHHHHHHHHHCC
T ss_conf 9998359998267799999999829978889999999997065
No 7
>PRK00014 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase; Provisional
Probab=100.00 E-value=0 Score=560.39 Aligned_cols=201 Identities=43% Similarity=0.676 Sum_probs=198.8
Q ss_pred HHHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEEHHHCCHHHHHHHHHHCCCCEEEECCHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 56699999999689829999677898870133484459999999999708994586146899987403643244566566
Q gi|254780359|r 9 ERYIEDVIQSFQKGEMVIVTDADDRENEADLVLAAIHCTSEKMAFIIRHTCGIVCTPMPFHTAHKLKLNPMVLENESVHK 88 (210)
Q Consensus 9 ~~~ie~ai~al~~G~~Viv~D~~dREnEgDlv~~Ae~vt~e~i~fm~~~~~Glic~al~~~~~~~L~Lp~m~~~n~~~~~ 88 (210)
.++||+||++||+|+||||+||+|||||||||++|+++||++|+||++|++||||+|++.++|++|+||+|+..|.+.++
T Consensus 18 ~s~Ie~AI~alr~Gk~VIv~DdedREnEGDlv~aAe~~T~e~i~fm~~~~~GliCv~~~~~~~~~L~Lp~mv~~n~~~~~ 97 (230)
T PRK00014 18 ATRLERALQHLRIGRPVILMDDFDRENEADLIVAADKLTVPVMAQLIRDGSGIVCLCLPGETLDRLELPPMVDSNRSRYS 97 (230)
T ss_pred HHHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEEHHHCCHHHHHHHHHHCCCEEEEECCHHHHHHCCCCCCCCCCCCCCC
T ss_conf 40899999999879969998089987641589674229999999999958960897449999976799655687777677
Q ss_pred CCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEE
Q ss_conf 52178872034777899988999999999842013243138985001001269824667802677699887699600598
Q gi|254780359|r 89 TAFTVSVDSKHGITTGISADDRAYTIKNLANPHSIADNFVRPGHIFPLISRDGGVLVRPGHTEASVDLCKITGLPPIAVI 168 (210)
Q Consensus 89 taFtvsvd~~~g~tTGISa~DRa~TIr~la~~~~~~~df~~PGHV~pL~a~~gGvl~R~GHTEaavdL~~lAGl~P~~vi 168 (210)
|+||+||||++|+||||||.|||+|||+|++++++|+||++|||||||++++|||++|+|||||+||||+|||++|++||
T Consensus 98 T~ftvsvda~~g~tTGISa~DRa~TIr~la~~~~~~~Df~~PGHVfPL~A~~GGvl~R~GHTEasVdLa~LAGl~P~~vi 177 (230)
T PRK00014 98 TAFTVSIEAREGVTTGVSAVDRVTTIRAAIAPGARSGDVVSPGHVFPLRAQPGGVLTRRGHTEGSVDLAALAGLRPAGVL 177 (230)
T ss_pred CCEEEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCHHHCCCCCCCCEEEECCCCEEECCCCHHHHHHHHHHCCCCCEEEE
T ss_conf 87378886058864886688999999998688998677289998125765679881347706999999998299960899
Q ss_pred EEEECCCCCCCCHHHHHHHHHHHCCCEEEHHHHHHHHHHCC
Q ss_conf 88536887505989999999983890777999999998437
Q gi|254780359|r 169 CELVNDDGTIKKGKQVIEFSKKYDLKIISVQDLIAWRKKKE 209 (210)
Q Consensus 169 ~Eil~~~G~~~~~~~~~~fA~~~~lp~i~i~dli~yr~~~e 209 (210)
|||||+||+||+++++.+||++|+||+|+|+|||+||++++
T Consensus 178 cEil~~dG~mar~~~l~~fA~~h~L~~isI~dLi~Yr~~~~ 218 (230)
T PRK00014 178 CELMNADGTMMRGASLERYAAKEGLVALAIDELAAHLQARG 218 (230)
T ss_pred EEEECCCCCCCCHHHHHHHHHHCCCCEEEHHHHHHHHHHHC
T ss_conf 99856998754679999999981997898999999999846
No 8
>COG0108 RibB 3,4-dihydroxy-2-butanone 4-phosphate synthase [Coenzyme metabolism]
Probab=100.00 E-value=0 Score=558.31 Aligned_cols=203 Identities=49% Similarity=0.819 Sum_probs=199.2
Q ss_pred CCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEEHHHCCHHHHHHHHHHCCCCEEEECCHHHHHHHHCCCCCCCCCCC
Q ss_conf 79566999999996898299996778988701334844599999999997089945861468999874036432445665
Q gi|254780359|r 7 LDERYIEDVIQSFQKGEMVIVTDADDRENEADLVLAAIHCTSEKMAFIIRHTCGIVCTPMPFHTAHKLKLNPMVLENESV 86 (210)
Q Consensus 7 ~~~~~ie~ai~al~~G~~Viv~D~~dREnEgDlv~~Ae~vt~e~i~fm~~~~~Glic~al~~~~~~~L~Lp~m~~~n~~~ 86 (210)
+.+.+|++||++||+|+||||+||+||||||||||||+++||+.|+||++|++||||+++++++|++|+||+|+..|.+.
T Consensus 1 ~~~~~ie~ai~al~~G~~Viv~DdedREnEgDli~aAe~vT~e~i~fm~~~a~GliC~~lt~e~~~~L~Lp~Mv~~n~~~ 80 (203)
T COG0108 1 MMFERVEEAIEALRAGKPVIVVDDEDRENEGDLIFAAEAVTPEQIAFMRRHASGLICVALTEERAKRLGLPPMVDNNTDA 80 (203)
T ss_pred CCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCEEEEHHHCCHHHHHHHHHHCCEEEEEECCHHHHHHCCCCCCCCCCCCC
T ss_conf 95012999999998798699973888778605898811289999999998589159995899999857995002468888
Q ss_pred CCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEE
Q ss_conf 66521788720347778999889999999998420132431389850010012698246678026776998876996005
Q gi|254780359|r 87 HKTAFTVSVDSKHGITTGISADDRAYTIKNLANPHSIADNFVRPGHIFPLISRDGGVLVRPGHTEASVDLCKITGLPPIA 166 (210)
Q Consensus 87 ~~taFtvsvd~~~g~tTGISa~DRa~TIr~la~~~~~~~df~~PGHV~pL~a~~gGvl~R~GHTEaavdL~~lAGl~P~~ 166 (210)
++|+|||||||++ ++|||||.||++|||.|+++++.++||++|||||||+|++|||++|+|||||+||||+||||+|++
T Consensus 81 ~~taFtVsVd~~~-t~TGISa~DRa~TIr~l~~~~~~~~df~~PGHVfpL~A~~ggVl~R~GHTEasVdLarlAGl~Pa~ 159 (203)
T COG0108 81 HGTAFTVSVDARE-TTTGISAADRALTIRALADPGAKPSDFRRPGHVFPLRAKDGGVLERRGHTEAAVDLARLAGLKPAG 159 (203)
T ss_pred CCCCEEEEEECCC-CCCCCCHHHHHHHHHHHHCCCCCHHHCCCCCCEEEEEECCCCEECCCCHHHHHHHHHHHCCCCCCE
T ss_conf 8876499980423-768858889999999986578888884899970036506687631488079999999983999737
Q ss_pred EEEEEECCCCCCCCHHHHHHHHHHHCCCEEEHHHHHHHHHHCCC
Q ss_conf 98885368875059899999999838907779999999984379
Q gi|254780359|r 167 VICELVNDDGTIKKGKQVIEFSKKYDLKIISVQDLIAWRKKKEI 210 (210)
Q Consensus 167 vi~Eil~~~G~~~~~~~~~~fA~~~~lp~i~i~dli~yr~~~ei 210 (210)
||||||+++|+||+.+++++||++|+||+++|+|||+||+++|.
T Consensus 160 VicEi~~~dG~mar~~~~~~fa~~h~l~~iti~dli~yr~~~e~ 203 (203)
T COG0108 160 VICEIMNDDGTMARLPELEEFAKEHGLPVITIEDLIEYRKKHER 203 (203)
T ss_pred EEEEEECCCCCCCCHHHHHHHHHHCCCCEEEHHHHHHHHHHHCC
T ss_conf 99998679866157389999999839968889999999985069
No 9
>PRK03353 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase; Provisional
Probab=100.00 E-value=0 Score=558.44 Aligned_cols=203 Identities=41% Similarity=0.708 Sum_probs=200.6
Q ss_pred CCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEEHHHCCHHHHHHHHHHCCCCEEEECCHHHHHHHHCCCCCCCCCCC
Q ss_conf 79566999999996898299996778988701334844599999999997089945861468999874036432445665
Q gi|254780359|r 7 LDERYIEDVIQSFQKGEMVIVTDADDRENEADLVLAAIHCTSEKMAFIIRHTCGIVCTPMPFHTAHKLKLNPMVLENESV 86 (210)
Q Consensus 7 ~~~~~ie~ai~al~~G~~Viv~D~~dREnEgDlv~~Ae~vt~e~i~fm~~~~~Glic~al~~~~~~~L~Lp~m~~~n~~~ 86 (210)
-.|++|++||++||+|+||||+||+|||||||||++|+++||++|+||++|++|+||+|+++++|++|+||+|+..|.+.
T Consensus 11 ~~f~~Ie~Ai~al~~G~~Viv~Dd~dREnEgDlv~aAe~~t~e~v~fm~~~~~GliCv~~~~~~~~~L~Lp~m~~~n~~~ 90 (217)
T PRK03353 11 TPFERVEAALDALREGRGVLVLDDEDRENEGDMIFAAETMTVEQMALTIRHGSGIVCLCLTEERRKQLDLPMMVENNTSQ 90 (217)
T ss_pred CCCCHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEEHHHCCHHHHHHHHHHCCCCEEECCCHHHHHHCCCCCCCCCCCCC
T ss_conf 97215999999998799599983899876406897854399999999999579978835999999867996756877664
Q ss_pred CCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEE
Q ss_conf 66521788720347778999889999999998420132431389850010012698246678026776998876996005
Q gi|254780359|r 87 HKTAFTVSVDSKHGITTGISADDRAYTIKNLANPHSIADNFVRPGHIFPLISRDGGVLVRPGHTEASVDLCKITGLPPIA 166 (210)
Q Consensus 87 ~~taFtvsvd~~~g~tTGISa~DRa~TIr~la~~~~~~~df~~PGHV~pL~a~~gGvl~R~GHTEaavdL~~lAGl~P~~ 166 (210)
++|+||+||||++|++|||||+|||+|||.|++++++|+||++|||||||++++|||++|+||||||||||+|||++|++
T Consensus 91 ~~taFtvsvd~~~g~~TGISa~DRa~Tir~la~~~~~~~df~~PGHVfpL~a~~GGvl~R~GHTEasvdLa~LAGl~Pva 170 (217)
T PRK03353 91 YGTAFTVTIEAAEGVTTGVSAADRITTIRAAIADGAKPSDLNRPGHVFPLRAQPGGVLTRRGHTEATIDLMTLAGLKPAG 170 (217)
T ss_pred CCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCHHHCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEE
T ss_conf 57875155523058878879899999899873889985346899812402143688353797899999999981999659
Q ss_pred EEEEEECCCCCCCCHHHHHHHHHHHCCCEEEHHHHHHHHHHCC
Q ss_conf 9888536887505989999999983890777999999998437
Q gi|254780359|r 167 VICELVNDDGTIKKGKQVIEFSKKYDLKIISVQDLIAWRKKKE 209 (210)
Q Consensus 167 vi~Eil~~~G~~~~~~~~~~fA~~~~lp~i~i~dli~yr~~~e 209 (210)
||||||+++|+||+++++++||++|+||+++|+|||+||+++|
T Consensus 171 vicEil~~dG~ma~~~~~~~fA~~~~lp~isi~dli~yR~~~E 213 (217)
T PRK03353 171 VLCELTNDDGTMARAPEIIAFANQHNMPVLTIEDLVAYRQAHE 213 (217)
T ss_pred EEEEEECCCCCCCCHHHHHHHHHHCCCCEEEHHHHHHHHHHCC
T ss_conf 9999954998845689999999983997888999999999626
No 10
>PRK01792 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase; Provisional
Probab=100.00 E-value=0 Score=554.86 Aligned_cols=204 Identities=43% Similarity=0.743 Sum_probs=201.3
Q ss_pred CCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEEHHHCCHHHHHHHHHHCCCCEEEECCHHHHHHHHCCCCCCCCCCC
Q ss_conf 79566999999996898299996778988701334844599999999997089945861468999874036432445665
Q gi|254780359|r 7 LDERYIEDVIQSFQKGEMVIVTDADDRENEADLVLAAIHCTSEKMAFIIRHTCGIVCTPMPFHTAHKLKLNPMVLENESV 86 (210)
Q Consensus 7 ~~~~~ie~ai~al~~G~~Viv~D~~dREnEgDlv~~Ae~vt~e~i~fm~~~~~Glic~al~~~~~~~L~Lp~m~~~n~~~ 86 (210)
-++++|++||++||+|+||||+||+|||||||||++|+++||++|+||++|++|+||+|+++++|++|+||+|+..|++.
T Consensus 11 ~~~~~V~~Ai~alr~G~~Viv~Dd~dREnEgDlv~aAe~~T~e~i~fm~~~~~GliCva~~~~~~~~L~Lp~mv~~n~~~ 90 (214)
T PRK01792 11 TSEERVINAINAFKQGNGVLVLDDEDRENEGDLIFPAETITPEQMAKLIRYGSGIVCLCITDELCQQLDLPPMVQHNTSV 90 (214)
T ss_pred CHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEEHHHCCHHHHHHHHHHCCCCEEEECCHHHHHHCCCCCCCCCCCCC
T ss_conf 97889999999998799699982899876406796855499999999999589778973699999777990214667788
Q ss_pred CCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEE
Q ss_conf 66521788720347778999889999999998420132431389850010012698246678026776998876996005
Q gi|254780359|r 87 HKTAFTVSVDSKHGITTGISADDRAYTIKNLANPHSIADNFVRPGHIFPLISRDGGVLVRPGHTEASVDLCKITGLPPIA 166 (210)
Q Consensus 87 ~~taFtvsvd~~~g~tTGISa~DRa~TIr~la~~~~~~~df~~PGHV~pL~a~~gGvl~R~GHTEaavdL~~lAGl~P~~ 166 (210)
++|+||+||||++|++|||||.||++|||.|++++++|+||++|||||||++++|||++|+|||||+||||+|||++|++
T Consensus 91 ~~taFtvsvd~~~g~~TGISa~DRa~TIr~l~~~~~~~~df~~PGHVfPL~a~~gGvl~R~GHTEaavdL~~lAGl~P~a 170 (214)
T PRK01792 91 NKTAFTVTIEAAKGVSTGVSAADRVTTIQAAIADNAKPTDLHRPGHVFPLRAANGGVLTRRGHTEAAVDLARLAGYKEAG 170 (214)
T ss_pred CCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCHHHCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEE
T ss_conf 88877999965789768869899999999985799997884999976824445698864697488999999982999719
Q ss_pred EEEEEECCCCCCCCHHHHHHHHHHHCCCEEEHHHHHHHHHHCCC
Q ss_conf 98885368875059899999999838907779999999984379
Q gi|254780359|r 167 VICELVNDDGTIKKGKQVIEFSKKYDLKIISVQDLIAWRKKKEI 210 (210)
Q Consensus 167 vi~Eil~~~G~~~~~~~~~~fA~~~~lp~i~i~dli~yr~~~ei 210 (210)
|||||||++|+||+.+++++||++|+||+++|+|||+||+++||
T Consensus 171 vicEil~ddG~ma~~~el~~fA~~~~lp~isi~dli~yR~~~~~ 214 (214)
T PRK01792 171 VICEITNDDGTMARTPEIVEFAKKFGYSVVTIEDLVEYRLKYNI 214 (214)
T ss_pred EEEEEECCCCCCCCHHHHHHHHHHCCCCEEEHHHHHHHHHHCCC
T ss_conf 99998459987367799999999839979989999999986479
No 11
>PRK09318 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=100.00 E-value=0 Score=527.88 Aligned_cols=189 Identities=32% Similarity=0.478 Sum_probs=181.2
Q ss_pred HHHHHHHHHCCCEEEEEECCCCCCCCCEEEEHHHCCHHHHHHHHHHCCCCEEEECCHHHHHHHHCCCCCCCCCCCCCCCE
Q ss_conf 99999999689829999677898870133484459999999999708994586146899987403643244566566521
Q gi|254780359|r 12 IEDVIQSFQKGEMVIVTDADDRENEADLVLAAIHCTSEKMAFIIRHTCGIVCTPMPFHTAHKLKLNPMVLENESVHKTAF 91 (210)
Q Consensus 12 ie~ai~al~~G~~Viv~D~~dREnEgDlv~~Ae~vt~e~i~fm~~~~~Glic~al~~~~~~~L~Lp~m~~~n~~~~~taF 91 (210)
||++|++||+||||||+| +|||||||||++|+++|||+||||++|++|+||+|++.++|++|+|++|+.+| ++|+|
T Consensus 1 iee~i~~~~~Gk~vivvD-edREnEGDli~aA~~~t~e~inFm~~~~rGliC~~l~~~~~~~l~l~~~~~~~---~~Taf 76 (387)
T PRK09318 1 MEELREAFLEGKPVILID-RNRENEADFVFPAQLITEEVVNFFLSYGKGLLCLTADEEDLLKRGFFKLPSNG---GETNF 76 (387)
T ss_pred CHHHHHHHHCCCEEEEEE-CCCCCHHCEEEEHHHCCHHHHHHHHHHCCEEEEEECCHHHHHHCCCCCCCCCC---CCCCC
T ss_conf 977999998799299993-89876023587764399999999999798779955899999637996678789---98660
Q ss_pred EEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEEE
Q ss_conf 78872034777899988999999999842013243138985001001269824667802677699887699600598885
Q gi|254780359|r 92 TVSVDSKHGITTGISADDRAYTIKNLANPHSIADNFVRPGHIFPLISRDGGVLVRPGHTEASVDLCKITGLPPIAVICEL 171 (210)
Q Consensus 92 tvsvd~~~g~tTGISa~DRa~TIr~la~~~~~~~df~~PGHV~pL~a~~gGvl~R~GHTEaavdL~~lAGl~P~~vi~Ei 171 (210)
||||||+. +|||||+|||+|||++++ +++|+||++|||||||+|+ |||+|+|||||+||||||||+.|++|||||
T Consensus 77 tvsid~~~--~TGISA~DRa~Ti~ala~-~~~~~D~~~PGHiFPL~A~--GVL~R~GHTEAavDLarLAGl~p~~VIcEI 151 (387)
T PRK09318 77 FIPVDYGT--GTGISAEERALTCRKIAE-GLYISEFRYPGHVTLLGGI--GFNKRKGHTEASLELSELLGFKRYAVIVEI 151 (387)
T ss_pred EEEEECCC--CCCCCHHHHHHHHHHHHC-CCCHHHHCCCCEEEEEECC--CEECCCCCHHHHHHHHHHCCCCCCEEEEEE
T ss_conf 79886698--889899999999999746-8998891789888332024--354057833899999997499971699998
Q ss_pred ECCCCCCCCHHHHHHHHHHHCCCEEEHHHHHHHHHHCC
Q ss_conf 36887505989999999983890777999999998437
Q gi|254780359|r 172 VNDDGTIKKGKQVIEFSKKYDLKIISVQDLIAWRKKKE 209 (210)
Q Consensus 172 l~~~G~~~~~~~~~~fA~~~~lp~i~i~dli~yr~~~e 209 (210)
|++||+||+++++.+||++|+||+++|+|||+||.++|
T Consensus 152 mndDGtMaR~~dL~~FA~~H~Lki~tIaDLI~yR~~~e 189 (387)
T PRK09318 152 LNEKGDSHDFDYVLKLSKKFSLPVLDIDDVWREFVKRK 189 (387)
T ss_pred ECCCCCCCCHHHHHHHHHHCCCCEEEHHHHHHHHHHCC
T ss_conf 66999814579999999977987999999998886176
No 12
>pfam00926 DHBP_synthase 3,4-dihydroxy-2-butanone 4-phosphate synthase. 3,4-Dihydroxy-2-butanone 4-phosphate is biosynthesized from ribulose 5-phosphate and serves as the biosynthetic precursor for the xylene ring of riboflavin. Sometimes found as a bifunctional enzyme with pfam00925.
Probab=100.00 E-value=0 Score=523.27 Aligned_cols=193 Identities=52% Similarity=0.880 Sum_probs=190.4
Q ss_pred HHHHHHHHHCCCEEEEEECCCCCCCCCEEEEHHHCCHHHHHHHHHHCCCCEEEECCHHHHHHHHCCCCCCCCCCCCCCCE
Q ss_conf 99999999689829999677898870133484459999999999708994586146899987403643244566566521
Q gi|254780359|r 12 IEDVIQSFQKGEMVIVTDADDRENEADLVLAAIHCTSEKMAFIIRHTCGIVCTPMPFHTAHKLKLNPMVLENESVHKTAF 91 (210)
Q Consensus 12 ie~ai~al~~G~~Viv~D~~dREnEgDlv~~Ae~vt~e~i~fm~~~~~Glic~al~~~~~~~L~Lp~m~~~n~~~~~taF 91 (210)
|++||++||+|+||||+|++|||||||||++|+++|+++|+||++|++|+||+|+++++|++|+||+|+..|.+.++|+|
T Consensus 1 ie~ai~al~~G~~Viv~D~~~REnEgdlv~~Ae~~t~e~i~fm~~~~~Glic~a~~~~~~~~LgLp~m~~~n~~~~~t~F 80 (193)
T pfam00926 1 IEEAIEALKAGKPVIVVDDEDRENEGDLVIAAEKVTPESVNFMIRHARGLICVALTEERADRLGLPPMVDRNTDRFGTAF 80 (193)
T ss_pred CHHHHHHHHCCCEEEEEECCCCCCCCCEEEEHHHCCHHHHHHHHHHCCCCEEEECCHHHHHHCCCCCCCCCCCCCCCCCE
T ss_conf 97899999879959999489987642489784449999999999958977797169999976699565555678878875
Q ss_pred EEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEEE
Q ss_conf 78872034777899988999999999842013243138985001001269824667802677699887699600598885
Q gi|254780359|r 92 TVSVDSKHGITTGISADDRAYTIKNLANPHSIADNFVRPGHIFPLISRDGGVLVRPGHTEASVDLCKITGLPPIAVICEL 171 (210)
Q Consensus 92 tvsvd~~~g~tTGISa~DRa~TIr~la~~~~~~~df~~PGHV~pL~a~~gGvl~R~GHTEaavdL~~lAGl~P~~vi~Ei 171 (210)
||||||+ +++|||||+|||+|||.|++++++|+||++|||||||++++|||++|+|||||+||||+|||++|++|||||
T Consensus 81 tvsvd~~-~~~TGISa~DRa~Tir~la~~~~~~~df~~PGHvfpL~a~~gGvl~R~GHTEasvdL~~lAGl~P~avi~Ei 159 (193)
T pfam00926 81 TVSVDAK-GTTTGISAADRALTIRALADPNAFPEDFVRPGHVFPLRAKEGGVLERRGHTEAAVDLARLAGLTPAAVICEI 159 (193)
T ss_pred EEEEECC-CCCCCCCHHHHHHHHHHHHCCCCCCCEEECCCCCCHHHCCCCCEEECCCHHHHHHHHHHHCCCCCEEEEEEE
T ss_conf 9888648-887897899999999998488888332404896563014369860469668999999998199963999998
Q ss_pred ECCCCCCCCHHHHHHHHHHHCCCEEEHHHHHHHH
Q ss_conf 3688750598999999998389077799999999
Q gi|254780359|r 172 VNDDGTIKKGKQVIEFSKKYDLKIISVQDLIAWR 205 (210)
Q Consensus 172 l~~~G~~~~~~~~~~fA~~~~lp~i~i~dli~yr 205 (210)
|+++|+||+++++++||++|+||+++|+|||+||
T Consensus 160 l~~dG~~~~~~~~~~fA~~~~lp~isi~dli~~r 193 (193)
T pfam00926 160 LNDDGTMARLPDLEEFAKEHGLPLITIEDLIEYR 193 (193)
T ss_pred ECCCCCCCCHHHHHHHHHHCCCCEEEHHHHHHHC
T ss_conf 5699882688999999998399799899988419
No 13
>PRK05773 3,4-dihydroxy-2-butanone 4-phosphate synthase; Validated
Probab=100.00 E-value=0 Score=506.13 Aligned_cols=194 Identities=28% Similarity=0.462 Sum_probs=178.5
Q ss_pred HHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEEHHHCCHHHHHHHHHHCCCCEEEECCHHHHHHHHCCCCCCCCCCC---
Q ss_conf 66999999996898299996778988701334844599999999997089945861468999874036432445665---
Q gi|254780359|r 10 RYIEDVIQSFQKGEMVIVTDADDRENEADLVLAAIHCTSEKMAFIIRHTCGIVCTPMPFHTAHKLKLNPMVLENESV--- 86 (210)
Q Consensus 10 ~~ie~ai~al~~G~~Viv~D~~dREnEgDlv~~Ae~vt~e~i~fm~~~~~Glic~al~~~~~~~L~Lp~m~~~n~~~--- 86 (210)
.+||+||++||+|+||||+||+|||||||||++||++||++|+||++|++|+||+|+++++|++|+||+|+..+.+.
T Consensus 2 ~~Ie~ai~alr~G~~Viv~DdedREnEgDlv~aAe~vtpe~i~fm~r~a~GliC~~~~~~~~~~L~Lp~m~~~~~~~~~~ 81 (218)
T PRK05773 2 MDIEEARKALRQGRPVLIYDGDGREEEVDMVFYAGAVTWKSVYWLRKNAGGLICYVTTKEVGELLGLEFLSEILKSIYRG 81 (218)
T ss_pred CCHHHHHHHHHCCCEEEEEECCCCCCCCCEEEEHHHCCHHHHHHHHHHCCCEEEEECCHHHHHHCCCCHHHCCCCCCCCC
T ss_conf 78899999998799699984899877606686765499999999998089727840799999866993111013345543
Q ss_pred --------CCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHH--------HHCC----HHHHCCCCCCCEEEECCCCCCCC
Q ss_conf --------665217887203477789998899999999984--------2013----24313898500100126982466
Q gi|254780359|r 87 --------HKTAFTVSVDSKHGITTGISADDRAYTIKNLAN--------PHSI----ADNFVRPGHIFPLISRDGGVLVR 146 (210)
Q Consensus 87 --------~~taFtvsvd~~~g~tTGISa~DRa~TIr~la~--------~~~~----~~df~~PGHV~pL~a~~gGvl~R 146 (210)
..++||+||||++ ++|||||+|||+|||+||+ |++. .+||++|||||||+++ ||++|
T Consensus 82 ~~~~~~~~~~~aFtvsvd~~~-t~TGISa~DRa~Tir~LA~~~~~~~~~~~~~~~~~~~dF~~PGHv~pL~a~--Gvl~R 158 (218)
T PRK05773 82 LVKKPPYGDEPAFSGWVNHVK-TKTGIRDEDRALTIRELHRVVELALRDPEEAREEFYENFYSPGHVPILLGR--GLGER 158 (218)
T ss_pred CCCCCCCCCCCCEEEEEECCC-CCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCC--CCCCC
T ss_conf 224577888764699971357-778989899999999998654321478344312215327999985700046--65667
Q ss_pred CCHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHCCCEEEHHHHHHHHHH
Q ss_conf 7802677699887699600598885368875059899999999838907779999999984
Q gi|254780359|r 147 PGHTEASVDLCKITGLPPIAVICELVNDDGTIKKGKQVIEFSKKYDLKIISVQDLIAWRKK 207 (210)
Q Consensus 147 ~GHTEaavdL~~lAGl~P~~vi~Eil~~~G~~~~~~~~~~fA~~~~lp~i~i~dli~yr~~ 207 (210)
+||||||||||+||||+|++|||||||+ |.+|+++++++||++|+||+|+|+|||+|+.+
T Consensus 159 ~GHTEasVdL~~lAGl~P~avicEildd-g~~m~~~~~~~fA~~~~l~~isi~dli~~~~r 218 (218)
T PRK05773 159 RGHTELSLILAEAAGLPPSAVIAEMLGE-GESLSKEEAKRYARELGIPLVEGKEIKKEVVR 218 (218)
T ss_pred CCCHHHHHHHHHHCCCCCEEEEEEEECC-CCCCCHHHHHHHHHHCCCCEEEHHHHHHHHHC
T ss_conf 8843799999998299961899999669-98656899999999839979989999999759
No 14
>KOG1284 consensus
Probab=100.00 E-value=0 Score=338.63 Aligned_cols=204 Identities=43% Similarity=0.667 Sum_probs=197.0
Q ss_pred CCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEEHHHCCHHHHHHHHHHCCCCEEEECCHHHHHHHHCCCCCC--CC
Q ss_conf 7795669999999968982999967789887013348445999999999970899458614689998740364324--45
Q gi|254780359|r 6 SLDERYIEDVIQSFQKGEMVIVTDADDRENEADLVLAAIHCTSEKMAFIIRHTCGIVCTPMPFHTAHKLKLNPMVL--EN 83 (210)
Q Consensus 6 ~~~~~~ie~ai~al~~G~~Viv~D~~dREnEgDlv~~Ae~vt~e~i~fm~~~~~Glic~al~~~~~~~L~Lp~m~~--~n 83 (210)
+-.+.+|+.+|..++.|++++|+|+++|||||||++++...+++.++|.++|+.|.+|+.+......+|.||+|+. .+
T Consensus 60 ~~~~~si~~ri~~~r~gk~~ivldd~~rdneg~L~~a~~~~~~~~~aF~vr~~~g~vd~~m~ga~~~~L~l~~~v~~~~~ 139 (357)
T KOG1284 60 PRVFCSIPARIPTFRHGKFVIVLDDEDRDNEGDLIIAAGNVIREDMAFLVRHGSGIVDVMMRGAYLGRLHLPLMVFEKND 139 (357)
T ss_pred CCCEECHHHHHHCCCCCCEEEEEECCCCCCCCCCCEECCCCCCHHHHHHHHCCCCEECHHHHHCCCCCCCCCCCCCCCCC
T ss_conf 53221155552103578579998055656777731110545511344444357723442143213565466633201035
Q ss_pred CCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHH-HHCCHHHHCCCCCCCEEEEC-CCCCCCCCCHHHHHHHHHHHCC
Q ss_conf 665665217887203477789998899999999984-20132431389850010012-6982466780267769988769
Q gi|254780359|r 84 ESVHKTAFTVSVDSKHGITTGISADDRAYTIKNLAN-PHSIADNFVRPGHIFPLISR-DGGVLVRPGHTEASVDLCKITG 161 (210)
Q Consensus 84 ~~~~~taFtvsvd~~~g~tTGISa~DRa~TIr~la~-~~~~~~df~~PGHV~pL~a~-~gGvl~R~GHTEaavdL~~lAG 161 (210)
++.++++||++||.+++++||||++||+.|+..+++ ..+.|+||.+|||++||+.+ +|||++|.||||++|+||.++|
T Consensus 140 de~~~~~~titvd~~~gt~TgVsahde~~T~~~l~s~~~~~pedf~rpghivpl~~~~~GGVl~r~ghtea~vdL~~l~g 219 (357)
T KOG1284 140 DETYETAFTITVDRAHGTVTGVSAHDEAYTGETLASARCDCPEDFDRPGHIVPLRYRLDGGVLERLGHTEAGVDLCELAG 219 (357)
T ss_pred CCCCCCCEEEEEEHHCCCCCEEEEECCCCCCHHHCCCCCCCHHHHCCCCCCCCCEEECCCCEEEECCCCCCCHHHHHHCC
T ss_conf 54454230578734118642057741224301000000388556066652513123347975888255530111788707
Q ss_pred CCCEEEEEEEECC-CCCCCCHHHHHHHHHHHCCCEEEHHHHHHHHHHCC
Q ss_conf 9600598885368-87505989999999983890777999999998437
Q gi|254780359|r 162 LPPIAVICELVND-DGTIKKGKQVIEFSKKYDLKIISVQDLIAWRKKKE 209 (210)
Q Consensus 162 l~P~~vi~Eil~~-~G~~~~~~~~~~fA~~~~lp~i~i~dli~yr~~~e 209 (210)
+.|++++||++++ +|.|++.+++..||.+|++|+++|+|+|+|+++|.
T Consensus 220 l~pl~~l~elv~q~~g~m~~lpd~r~fa~~~~i~~~~i~dliryl~~r~ 268 (357)
T KOG1284 220 LYPLGVLGELVVQADGSMARLPDCRSFAAEHAIPLISIEDLIRYLTKRP 268 (357)
T ss_pred CCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCH
T ss_conf 8723233455432786402684176666764577133566899875275
No 15
>PRK08815 GTP cyclohydrolase; Provisional
Probab=100.00 E-value=7e-39 Score=264.76 Aligned_cols=153 Identities=18% Similarity=0.156 Sum_probs=129.9
Q ss_pred HHHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEEHHHCCHHHHHHHHHHCCCCEEEECCHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 56699999999689829999677898870133484459999999999708994586146899987403643244566566
Q gi|254780359|r 9 ERYIEDVIQSFQKGEMVIVTDADDRENEADLVLAAIHCTSEKMAFIIRHTCGIVCTPMPFHTAHKLKLNPMVLENESVHK 88 (210)
Q Consensus 9 ~~~ie~ai~al~~G~~Viv~D~~dREnEgDlv~~Ae~vt~e~i~fm~~~~~Glic~al~~~~~~~L~Lp~m~~~n~~~~~ 88 (210)
...||+||++||+|+||||+||+|||| ||+|||++|||.||||.+|++|++|++++.++|++|+||
T Consensus 18 ~~rIE~Ai~dlR~Gr~VIvvDdEdREn---Li~AAE~~Tpe~infm~r~grGlicl~lt~~ra~~L~l~----------- 83 (376)
T PRK08815 18 AIRCERAAAELRAGRPVLLTDAQGQAR---AVIALDSSTAQSAAAFARAAQGRHYLFLTPTRAQVLGLE----------- 83 (376)
T ss_pred HHHHHHHHHHHHCCCEEEEECCCCCEE---EEEEHHHCCHHHHHHHHHHHCCCEEEECCHHHHHHCCCC-----------
T ss_conf 879999999998798099988999852---020665499999999999748984787899999755989-----------
Q ss_pred CCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEE
Q ss_conf 52178872034777899988999999999842013243138985001001269824667802677699887699600598
Q gi|254780359|r 89 TAFTVSVDSKHGITTGISADDRAYTIKNLANPHSIADNFVRPGHIFPLISRDGGVLVRPGHTEASVDLCKITGLPPIAVI 168 (210)
Q Consensus 89 taFtvsvd~~~g~tTGISa~DRa~TIr~la~~~~~~~df~~PGHV~pL~a~~gGvl~R~GHTEaavdL~~lAGl~P~~vi 168 (210)
+.++.+||||+.||++|+.....++ ...|||++|.. ++||++|||+|||||.|++||
T Consensus 84 --------a~~g~tt~i~~~d~~~~~~~a~~~d-----~~~~~~v~p~~----------~~~eaavDLaRlAgL~PagvI 140 (376)
T PRK08815 84 --------APQGARVALPDHDYDRLAALAYLRD-----TRVPAPWAPGD----------ALDAGAVEIARLALLLPAMLA 140 (376)
T ss_pred --------CCCCCEECCCCCCHHHHHHHHHCCC-----CCCCCCCCCCC----------CCHHHHHHHHHHCCCCCCEEE
T ss_conf --------6669746054258899987662369-----99998747764----------330578999998199752699
Q ss_pred EEEECCCCCCCCHHHHHHHHHHHCCCEEEHHHHHHHHHHCC
Q ss_conf 88536887505989999999983890777999999998437
Q gi|254780359|r 169 CELVNDDGTIKKGKQVIEFSKKYDLKIISVQDLIAWRKKKE 209 (210)
Q Consensus 169 ~Eil~~~G~~~~~~~~~~fA~~~~lp~i~i~dli~yr~~~e 209 (210)
||++++|.. .|+ +++.+++.|+++|++.++
T Consensus 141 cEI~~~D~~--------~~~---~~~~l~i~dl~~~~~~~~ 170 (376)
T PRK08815 141 VPLPVHDEA--------AFA---GCQSLALDDLDRGCATSA 170 (376)
T ss_pred EEECCCCHH--------HHC---CCCCCCHHHHHHHHHHHH
T ss_conf 985687889--------856---887877899999998632
No 16
>TIGR00644 recJ single-stranded-DNA-specific exonuclease RecJ; InterPro: IPR004610 All proteins in this family are 5'-3' single-strand DNA exonucleases. These proteins are used in some aspects of mismatch repair, recombination, and recombinational repair. RecJ is a single-stranded DNA-specific endonuclease which is required for many types of recombination events, although the stringency of the requirement for RecJ appears to vary with the type of recombinational event monitored, and the other recombination gene products which are available.; GO: 0008409 5'-3' exonuclease activity, 0006281 DNA repair, 0006310 DNA recombination.
Probab=93.05 E-value=0.24 Score=29.66 Aligned_cols=97 Identities=22% Similarity=0.274 Sum_probs=76.8
Q ss_pred CCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEEHHHCCHHH--HHHHHHHCC-CCEEEECCHHHHHHHHCCCCCCC
Q ss_conf 779566999999996898299996778988701334844599999--999997089-94586146899987403643244
Q gi|254780359|r 6 SLDERYIEDVIQSFQKGEMVIVTDADDRENEADLVLAAIHCTSEK--MAFIIRHTC-GIVCTPMPFHTAHKLKLNPMVLE 82 (210)
Q Consensus 6 ~~~~~~ie~ai~al~~G~~Viv~D~~dREnEgDlv~~Ae~vt~e~--i~fm~~~~~-Glic~al~~~~~~~L~Lp~m~~~ 82 (210)
-| +.-|++.++|+++++-|+||-|-| |+-+|.-. +.||..-+. ..+++.+|...-+..|+.+-..+
T Consensus 40 dm-~kAv~ri~~A~~~~eki~i~GDyD----------vDGiTSt~~l~~~L~~lGp~~~~~~~IPnR~~egYG~~~~~~~ 108 (705)
T TIGR00644 40 DM-EKAVERIIEAIENNEKILIFGDYD----------VDGITSTAILVEFLRELGPYVQVDYYIPNRFTEGYGLSPEALR 108 (705)
T ss_pred CH-HHHHHHHHHHHHCCCCEEEEECCC----------CCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCHHHHH
T ss_conf 36-899999999997289389996175----------2268999999999995099732466626635777788989999
Q ss_pred CCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 5665665217887203477789998899999999984
Q gi|254780359|r 83 NESVHKTAFTVSVDSKHGITTGISADDRAYTIKNLAN 119 (210)
Q Consensus 83 n~~~~~taFtvsvd~~~g~tTGISa~DRa~TIr~la~ 119 (210)
+-...++..=|+|| +|||+.+=..-++.+.=
T Consensus 109 ~~~~~G~~LiiTVD------~Gi~a~~e~~~a~~~G~ 139 (705)
T TIGR00644 109 ELKENGVSLIITVD------NGISAHEEIEYAKELGI 139 (705)
T ss_pred HHHHCCCEEEEECC------CCHHHHHHHHHHHHCCC
T ss_conf 99866983999826------87426999999986698
No 17
>KOG3009 consensus
Probab=91.63 E-value=1.3 Score=25.11 Aligned_cols=163 Identities=19% Similarity=0.188 Sum_probs=90.1
Q ss_pred HHHHHHHHCCCEEEEEECCCCCCCCCEEEEHHHCCHHHHHHHH----------HHCCCCEEEECCHHHHHHHHCCCCCCC
Q ss_conf 9999999689829999677898870133484459999999999----------708994586146899987403643244
Q gi|254780359|r 13 EDVIQSFQKGEMVIVTDADDRENEADLVLAAIHCTSEKMAFII----------RHTCGIVCTPMPFHTAHKLKLNPMVLE 82 (210)
Q Consensus 13 e~ai~al~~G~~Viv~D~~dREnEgDlv~~Ae~vt~e~i~fm~----------~~~~Glic~al~~~~~~~L~Lp~m~~~ 82 (210)
.++-+||++|+||+...+-=- .--+=+|--..|...+..-+ .-.-|.+|+.++++....|.+..-...
T Consensus 30 pqv~eal~~~epVValestii--tHgmPyp~nl~tA~~veq~vrs~GaipaTialldg~~kiGLt~e~L~~La~~g~~~~ 107 (614)
T KOG3009 30 PQVKEALANGEPVVALESTII--THGMPYPQNLSTATVVEQKVRSNGAIPATIALLDGIIKIGLTPEELETLASSGPSAV 107 (614)
T ss_pred HHHHHHHHCCCCEEEEEEEEE--ECCCCCCCCCCCCCCHHHHHHCCCCCCHHHHHHCCEEEECCCHHHHHHHHHCCCCCC
T ss_conf 889999856997797574455--247767866311002455641589863232440553353588999998752685221
Q ss_pred CCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHCCCCCCCEEEECCCCCCCCCCHH-HHHHHHHHHCC
Q ss_conf 56656652178872034777899988999999999842013243138985001001269824667802-67769988769
Q gi|254780359|r 83 NESVHKTAFTVSVDSKHGITTGISADDRAYTIKNLANPHSIADNFVRPGHIFPLISRDGGVLVRPGHT-EASVDLCKITG 161 (210)
Q Consensus 83 n~~~~~taFtvsvd~~~g~tTGISa~DRa~TIr~la~~~~~~~df~~PGHV~pL~a~~gGvl~R~GHT-EaavdL~~lAG 161 (210)
--+...-++++++--..| ||+-++. . +|.. .--.-|.+|| .|||-+-.-|+ .++-||-.+ |
T Consensus 108 kvsrRD~~~v~i~rlvgg-TtvaaTm------~-iA~~-~gI~vfaTgg--------iggvhr~An~smdisadl~el-g 169 (614)
T KOG3009 108 KVSRRDIASVVIVRLVGG-TTVAATM------I-IAHA-AGIVVFATGG--------IGGVHRGANQSMDISADLTEL-G 169 (614)
T ss_pred CCCCCCCCCCCEEEECCC-CCHHHHH------H-HCCC-CEEEEEECCC--------CCHHHHCCCCCCCHHHHHHHH-C
T ss_conf 301023210002540277-1253643------0-0021-1589994288--------205331640021334432664-5
Q ss_pred CCCEEEEEEEECCCCCCCCHHHHHHHHHHHCCCEEEH
Q ss_conf 9600598885368875059899999999838907779
Q gi|254780359|r 162 LPPIAVICELVNDDGTIKKGKQVIEFSKKYDLKIISV 198 (210)
Q Consensus 162 l~P~~vi~Eil~~~G~~~~~~~~~~fA~~~~lp~i~i 198 (210)
-.|++|+|+=| -..++.+...+|-+.++.++++.
T Consensus 170 rtpvavv~agv---ksiLdip~tle~letq~V~vvtl 203 (614)
T KOG3009 170 RTPVAVVSAGV---KSILDIPKTLEYLETQGVVVVTL 203 (614)
T ss_pred CCCCEEEECCH---HHHCCCHHHHHHHCCCCEEEEEE
T ss_conf 89606773024---66516235421002650799996
No 18
>PRK11070 ssDNA exonuclease RecJ; Provisional
Probab=87.90 E-value=1.6 Score=24.52 Aligned_cols=93 Identities=25% Similarity=0.329 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEEHHHCCHHH--HHHHHHHCCCCEEEECCHHHHHHHHCCCCCCCCCCC
Q ss_conf 566999999996898299996778988701334844599999--999997089945861468999874036432445665
Q gi|254780359|r 9 ERYIEDVIQSFQKGEMVIVTDADDRENEADLVLAAIHCTSEK--MAFIIRHTCGIVCTPMPFHTAHKLKLNPMVLENESV 86 (210)
Q Consensus 9 ~~~ie~ai~al~~G~~Viv~D~~dREnEgDlv~~Ae~vt~e~--i~fm~~~~~Glic~al~~~~~~~L~Lp~m~~~n~~~ 86 (210)
..-+++..+|+++|+.|+|+-|-| ++-+|.-. ..|+.+.+.--++.-+|...-+-.||..-..+.-..
T Consensus 55 ~~Av~ri~~Ai~~~ekI~I~GDYD----------vDGiTstaiL~~~l~~~g~~~v~y~IP~R~~eGYGl~~~~i~~~~~ 124 (574)
T PRK11070 55 EKAVEILYNAFREGTRIIVVGDFD----------ADGATSTALSVLALRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHA 124 (574)
T ss_pred HHHHHHHHHHHHCCCEEEEEECCC----------CHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCHHHHHHHHH
T ss_conf 999999999998799499993478----------6067999999999998699716997989876787979999999996
Q ss_pred CCCCEEEEEECCCCCCCCCCHHHHHHHHHHH
Q ss_conf 6652178872034777899988999999999
Q gi|254780359|r 87 HKTAFTVSVDSKHGITTGISADDRAYTIKNL 117 (210)
Q Consensus 87 ~~taFtvsvd~~~g~tTGISa~DRa~TIr~l 117 (210)
.+..--|+|| +|||+.+...-++.+
T Consensus 125 ~g~~LiITvD------cGi~a~e~i~~a~~~ 149 (574)
T PRK11070 125 RGAQLIVTVD------NGISSHAGVAHAKSL 149 (574)
T ss_pred CCCCEEEEEC------CCHHHHHHHHHHHHC
T ss_conf 5999999957------853029999999977
No 19
>COG1560 HtrB Lauroyl/myristoyl acyltransferase [Cell envelope biogenesis, outer membrane]
Probab=84.14 E-value=4 Score=22.00 Aligned_cols=92 Identities=18% Similarity=0.235 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHCCCEEEEEECCC-CCCCCCEE--EEHHHCCHHHHHHHHHHCCCCEEEECCHHHHHHHHCCCCCCCCCCC
Q ss_conf 66999999996898299996778-98870133--4844599999999997089945861468999874036432445665
Q gi|254780359|r 10 RYIEDVIQSFQKGEMVIVTDADD-RENEADLV--LAAIHCTSEKMAFIIRHTCGIVCTPMPFHTAHKLKLNPMVLENESV 86 (210)
Q Consensus 10 ~~ie~ai~al~~G~~Viv~D~~d-REnEgDlv--~~Ae~vt~e~i~fm~~~~~Glic~al~~~~~~~L~Lp~m~~~n~~~ 86 (210)
+.|...|++||+|+.|.+..|.| .++++-+| |.-+..|+.-++.|.+.++=-|. |.....|.+
T Consensus 182 ~~ir~li~~Lk~G~~v~~lpDqd~~~~~~vfvpFFg~~a~T~t~~~~LA~~~~a~vi-------------p~~~~r~~~- 247 (308)
T COG1560 182 EGIRQLIKALKQGEAVGYLPDQDYGPGESVFVPFFGVPAATTTGPAKLARLTGAAVV-------------PVFPVRNPD- 247 (308)
T ss_pred HHHHHHHHHHHCCCEEEEECCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHCCCEE-------------EEEEEEECC-
T ss_conf 339999999846985899257666899875742478740013269999999699789-------------998899689-
Q ss_pred CCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 665217887203477789998899999999984
Q gi|254780359|r 87 HKTAFTVSVDSKHGITTGISADDRAYTIKNLAN 119 (210)
Q Consensus 87 ~~taFtvsvd~~~g~tTGISa~DRa~TIr~la~ 119 (210)
+..|++.+... -|+-...|=..+.+.+.+
T Consensus 248 -g~~y~l~i~p~---~~~~~~~D~~~~a~~mn~ 276 (308)
T COG1560 248 -GSGYTLHIHPP---MTDDPSEDVEADAQRMND 276 (308)
T ss_pred -CCEEEEEEECC---CCCCCCCCHHHHHHHHHH
T ss_conf -98699998465---547887799999999999
No 20
>cd07985 LPLAT_GPAT Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: GPAT. Lysophospholipid acyltransferase (LPLAT) superfamily member: glycerol-3-phosphate 1-acyltransferase (GPAT, PlsB). LPLATs are acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. This subgroup includes glycerol-3-phosphate 1-acyltransferase (GPAT, PlsB).
Probab=82.22 E-value=2.8 Score=22.99 Aligned_cols=153 Identities=12% Similarity=0.204 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHHCCCEEEEEECCCCCCCCCEE-----------------EEHHHCCHHHHHHHHHHCCCCEEEECCHHHH
Q ss_conf 56699999999689829999677898870133-----------------4844599999999997089945861468999
Q gi|254780359|r 9 ERYIEDVIQSFQKGEMVIVTDADDRENEADLV-----------------LAAIHCTSEKMAFIIRHTCGIVCTPMPFHTA 71 (210)
Q Consensus 9 ~~~ie~ai~al~~G~~Viv~D~~dREnEgDlv-----------------~~Ae~vt~e~i~fm~~~~~Glic~al~~~~~ 71 (210)
.+.++++-+.+++|.=||++-..--|..--++ ++...|+..-+.-=-.-++-|+|+--.+-.-
T Consensus 8 ~~~~~~i~e~l~qG~NVvllsNHQtEaDp~ii~llle~~~p~laen~iyVAGdRV~tDPL~kPFSmGrNLlCvySKKhm~ 87 (235)
T cd07985 8 LSRFDRIEEQLAQGHNVVLLANHQTEADPAVISLLLEKTHPYLAENMIYVAGDRVVSDPLCKPFSMGRNLLCVHSKKHID 87 (235)
T ss_pred HHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHCCCHHHHHHEEEECCCEEECCCCCCCCCCCCCEEEEEEHHHCC
T ss_conf 99999999999679968997177675577999999954265346521896177662485657643677669985421058
Q ss_pred H---------HHHCCCCCCCCCCCCCCCEEEEEECCC-----CCCCC---CC--HHHHHHHHHHHHHHHCCHHHHCCCCC
Q ss_conf 8---------740364324456656652178872034-----77789---99--88999999999842013243138985
Q gi|254780359|r 72 H---------KLKLNPMVLENESVHKTAFTVSVDSKH-----GITTG---IS--ADDRAYTIKNLANPHSIADNFVRPGH 132 (210)
Q Consensus 72 ~---------~L~Lp~m~~~n~~~~~taFtvsvd~~~-----g~tTG---IS--a~DRa~TIr~la~~~~~~~df~~PGH 132 (210)
+ +-++.-|..--.-..+-.-.|||--.- .. +| ++ +..-..+.|.|+... ..|||
T Consensus 88 d~Pelk~~K~~~N~~slk~m~~lL~~Gg~~iwvAPSGGRDR~d~-~g~~~papFD~~sv~~~r~l~~~s------~~ptH 160 (235)
T cd07985 88 DPPELKEEKMKANLATLKEMQQLLNEGGQLIWVAPSGGRDRPDA-NGEWYPDPFDPSAVEMMRLLAQKS------RVPTH 160 (235)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCC-CCCEECCCCCHHHHHHHHHHHHHC------CCCCC
T ss_conf 98778899999869999999999846875999878899888899-989813888979999999999725------89864
Q ss_pred CCEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEE
Q ss_conf 001001269824667802677699887699600598
Q gi|254780359|r 133 IFPLISRDGGVLVRPGHTEASVDLCKITGLPPIAVI 168 (210)
Q Consensus 133 V~pL~a~~gGvl~R~GHTEaavdL~~lAGl~P~~vi 168 (210)
++||.-.-=-++--+-..|-.+-=-|...+.|+++-
T Consensus 161 ~yplAl~tydImPPP~~vekeiGE~R~~~f~~vgls 196 (235)
T cd07985 161 LYPMALLTYDIMPPPKQVEKEIGEKRAVAFTGVGLA 196 (235)
T ss_pred EEEHHHHHCCCCCCCHHHHHHHCCEEEEECCCCEEE
T ss_conf 321588647467995022134363346511353576
No 21
>PRK00509 argininosuccinate synthase; Provisional
Probab=79.11 E-value=5.6 Score=21.06 Aligned_cols=21 Identities=10% Similarity=0.245 Sum_probs=14.4
Q ss_pred CCCCCHHHHHHHHHHHCCCEE
Q ss_conf 750598999999998389077
Q gi|254780359|r 176 GTIKKGKQVIEFSKKYDLKII 196 (210)
Q Consensus 176 G~~~~~~~~~~fA~~~~lp~i 196 (210)
.+.+.+++..+||++||+|+-
T Consensus 147 ~~~~sR~~~i~ya~~~gIpv~ 167 (398)
T PRK00509 147 WDLMSREELIAYAEEHGIPIP 167 (398)
T ss_pred CCCCCHHHHHHHHHHCCCCCC
T ss_conf 341689999999998699888
No 22
>TIGR02407 ectoine_ectB diaminobutyrate--2-oxoglutarate aminotransferase; InterPro: IPR012773 Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (2.6.1.76 from EC) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore (Q9Z3R2 from SWISSPROT) or 1,3-diaminopropane (P44951 from SWISSPROT) biosynthesis. Ectoine is a compatible solute particularly effective in conferring salt tolerance.; GO: 0030170 pyridoxal phosphate binding, 0047307 diaminobutyrate-pyruvate transaminase activity, 0019491 ectoine biosynthetic process.
Probab=77.37 E-value=3.3 Score=22.55 Aligned_cols=68 Identities=19% Similarity=0.282 Sum_probs=45.0
Q ss_pred HHHCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHCC-----C-CCEEEEEEEECCCC--CCCCHH---HHHHHHHHHCC
Q ss_conf 4313898500100126982466780267769988769-----9-60059888536887--505989---99999998389
Q gi|254780359|r 125 DNFVRPGHIFPLISRDGGVLVRPGHTEASVDLCKITG-----L-PPIAVICELVNDDG--TIKKGK---QVIEFSKKYDL 193 (210)
Q Consensus 125 ~df~~PGHV~pL~a~~gGvl~R~GHTEaavdL~~lAG-----l-~P~~vi~Eil~~~G--~~~~~~---~~~~fA~~~~l 193 (210)
.-++..=||.++=-. |. =.+-.+..-.|=|+-+ + .|||||.|-+.-+| ++|+.+ .+.+..++|++
T Consensus 154 ~aG~~~~~v~~mPYD--gY--~~~~~D~~~Yfe~~L~D~sSGvd~PAAvILETVQGEGGiNvAs~eWLq~l~~lCr~~DI 229 (413)
T TIGR02407 154 GAGVPLSNVSRMPYD--GY--LGGEVDTIAYFEKLLEDSSSGVDLPAAVILETVQGEGGINVASKEWLQRLEKLCRRHDI 229 (413)
T ss_pred CCCCCCCCCEECCCC--CC--CCCCCCHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCC
T ss_conf 267447782568765--57--78643228999986178889847672589811037577031235579999999986498
Q ss_pred CEE
Q ss_conf 077
Q gi|254780359|r 194 KII 196 (210)
Q Consensus 194 p~i 196 (210)
-+|
T Consensus 230 LLI 232 (413)
T TIGR02407 230 LLI 232 (413)
T ss_pred EEE
T ss_conf 687
No 23
>TIGR01418 PEP_synth phosphoenolpyruvate synthase; InterPro: IPR006319 This family represents phosphoenolpyruvate synthase; also called pyruvate,water dikinase and PEP synthase. The member from Methanococcus jannaschii contains a large intein. This enzyme generates phosphoenolpyruvate (PEP) from pyruvate, hydrolyzing ATP to AMP and releasing inorganic phosphate in the process. The enzyme shows extensive homology to other enzymes that use PEP as substrate or product. This enzyme may provide PEP for gluconeogenesis, for PTS-type carbohydrate transport systems, or for other processes. ; GO: 0008986 pyruvate water dikinase activity, 0006094 gluconeogenesis.
Probab=74.43 E-value=2 Score=23.88 Aligned_cols=89 Identities=25% Similarity=0.363 Sum_probs=53.5
Q ss_pred HHHHH-HHHHHCCCEEEEEECCCCCCCCCEEEEHHHCCHHHHHHHHHHCCCCEEEECCHHHHHHHHCCCCCCCCC--CCC
Q ss_conf 69999-999968982999967789887013348445999999999970899458614689998740364324456--656
Q gi|254780359|r 11 YIEDV-IQSFQKGEMVIVTDADDRENEADLVLAAIHCTSEKMAFIIRHTCGIVCTPMPFHTAHKLKLNPMVLENE--SVH 87 (210)
Q Consensus 11 ~ie~a-i~al~~G~~Viv~D~~dREnEgDlv~~Ae~vt~e~i~fm~~~~~Glic~al~~~~~~~L~Lp~m~~~n~--~~~ 87 (210)
+|+++ .+.|+.|. |||+|--|--=|=-|=-||.-|| +=||.-|=| .=.++.||+|-.|.-.+ ...
T Consensus 418 ~~~e~k~~~~~~Gd-iLVT~mTDPDWeP~MK~AsAIVT---------n~GG~TcHA--AIVaRELGiPAVVG~~~AT~~l 485 (877)
T TIGR01418 418 DLKEMKVDKFEEGD-ILVTDMTDPDWEPVMKRASAIVT---------NEGGRTCHA--AIVARELGIPAVVGTGDATKKL 485 (877)
T ss_pred CHHHHCCCCCCCCC-EEEECCCCCCCHHHCCCCCEEEE---------CCCCCHHHH--HHHHHHCCCCCEECCCHHHHHH
T ss_conf 74343204438864-68757874281212213030470---------788750089--9998755888266470345651
Q ss_pred CCCEEEEEECCCCCCCCCCHHHHHH
Q ss_conf 6521788720347778999889999
Q gi|254780359|r 88 KTAFTVSVDSKHGITTGISADDRAY 112 (210)
Q Consensus 88 ~taFtvsvd~~~g~tTGISa~DRa~ 112 (210)
.+..-||||..+| -||+==+-|..
T Consensus 486 kdG~~VTVdc~eG-dtG~VY~Gr~~ 509 (877)
T TIGR01418 486 KDGEEVTVDCAEG-DTGYVYAGRVE 509 (877)
T ss_pred CCCCEEEEECCCC-CCCCEECCCEE
T ss_conf 0878689854448-81313457023
No 24
>pfam06794 UPF0270 Uncharacterized protein family (UPF0270).
Probab=70.54 E-value=5.6 Score=21.07 Aligned_cols=27 Identities=41% Similarity=0.450 Sum_probs=22.3
Q ss_pred CCCCHHHHHHHHHHHHCCCEEEEEECCC
Q ss_conf 5779566999999996898299996778
Q gi|254780359|r 5 KSLDERYIEDVIQSFQKGEMVIVTDADD 32 (210)
Q Consensus 5 ~~~~~~~ie~ai~al~~G~~Viv~D~~d 32 (210)
.++ ...|+++..+|++|+.+|+||.+.
T Consensus 33 ~sl-~~Kv~qv~~qL~~G~~vI~fde~~ 59 (70)
T pfam06794 33 LSL-EEKVEQVKQQLKSGEAVIVFSELH 59 (70)
T ss_pred CCH-HHHHHHHHHHHHCCCEEEEECCCC
T ss_conf 479-999999999998699899987988
No 25
>PRK13820 argininosuccinate synthase; Provisional
Probab=63.31 E-value=11 Score=19.25 Aligned_cols=132 Identities=19% Similarity=0.256 Sum_probs=59.0
Q ss_pred EEEEHHHCCHHHHHHHHHH-CCC-CEEEECCHHH-HHHHHCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHH
Q ss_conf 3348445999999999970-899-4586146899-987403643244566566521788720347778999889999999
Q gi|254780359|r 39 LVLAAIHCTSEKMAFIIRH-TCG-IVCTPMPFHT-AHKLKLNPMVLENESVHKTAFTVSVDSKHGITTGISADDRAYTIK 115 (210)
Q Consensus 39 lv~~Ae~vt~e~i~fm~~~-~~G-lic~al~~~~-~~~L~Lp~m~~~n~~~~~taFtvsvd~~~g~tTGISa~DRa~TIr 115 (210)
|.|+...=|.-.+.|+... +-. .+|+..+-.. -+.+..- .......+.. .+.+|.++-+ ++
T Consensus 8 LAySGGLDTSv~l~wL~e~yg~~eVi~~~~d~Gq~~e~~~~~---~~kA~~~G~~-~~viD~r~ef------------~~ 71 (395)
T PRK13820 8 LAYSGGLDTSVCIPLLKEKYGYDEVITVAVDVGQPEEEIKEA---EEKAKKLGVK-HYTIDAKEEF------------AK 71 (395)
T ss_pred EEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCHHHHHHH---HHHHHHCCCC-EEEEECHHHH------------HH
T ss_conf 996898489999999998519986999999899976776999---9999970994-9998169999------------99
Q ss_pred HHHHHHCCHHHHCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHCCCCCE-----------------------EEEEEEE
Q ss_conf 99842013243138985001001269824667802677699887699600-----------------------5988853
Q gi|254780359|r 116 NLANPHSIADNFVRPGHIFPLISRDGGVLVRPGHTEASVDLCKITGLPPI-----------------------AVICELV 172 (210)
Q Consensus 116 ~la~~~~~~~df~~PGHV~pL~a~~gGvl~R~GHTEaavdL~~lAGl~P~-----------------------~vi~Eil 172 (210)
..+-|.-++.-+.- | +||... +.|+=..+..|++|+--|..-+ -||+..-
T Consensus 72 ~~i~paI~ana~Ye-g--YpL~ts----laRplia~~~v~~A~~~ga~aiaHG~TGkGNDQvRFe~~~~ap~~~iiaP~R 144 (395)
T PRK13820 72 DYIFPAIKANALYE-G--YPLGTA----LARPLIAKKIVEVAKKEGASAIAHGCTGKGNDQLRFEAVFRATDLDVIAPIR 144 (395)
T ss_pred HHHHHHHHCCCCCC-C--CCCCCC----HHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHCCCCEEEEEEC
T ss_conf 99999997087326-7--303241----0468999999999997598298307778987099999998678986872104
Q ss_pred CCCCCCCCHHHHHHHHHHHCCCEE
Q ss_conf 688750598999999998389077
Q gi|254780359|r 173 NDDGTIKKGKQVIEFSKKYDLKII 196 (210)
Q Consensus 173 ~~~G~~~~~~~~~~fA~~~~lp~i 196 (210)
+ .++ .+++..+||++||+|+-
T Consensus 145 ~--~~~-~R~~~i~ya~~~gI~v~ 165 (395)
T PRK13820 145 E--LNL-TREWEIEYAKEHGIPVP 165 (395)
T ss_pred C--HHH-HHHHHHHHHHHCCCCCC
T ss_conf 5--334-58999999998599888
No 26
>PRK04966 hypothetical protein; Provisional
Probab=62.12 E-value=14 Score=18.59 Aligned_cols=36 Identities=31% Similarity=0.421 Sum_probs=25.6
Q ss_pred CCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEEH
Q ss_conf 7577956699999999689829999677898870133484
Q gi|254780359|r 4 KKSLDERYIEDVIQSFQKGEMVIVTDADDRENEADLVLAA 43 (210)
Q Consensus 4 ~~~~~~~~ie~ai~al~~G~~Viv~D~~dREnEgDlv~~A 43 (210)
+-++ ..+|+++...|++|+.+|+||... |.-=+++.
T Consensus 32 E~sl-~~Kv~qv~~qL~~G~a~Ivfd~~~---Es~~I~~k 67 (72)
T PRK04966 32 ERSL-EQKVADVKRQLQSGEAVLVWSELH---ETVNIMPK 67 (72)
T ss_pred CCCH-HHHHHHHHHHHHCCCEEEEECCCC---CEEEEECH
T ss_conf 4589-999999999997699899986887---73761538
No 27
>PRK00574 gltX glutamyl-tRNA synthetase; Reviewed
Probab=60.18 E-value=7 Score=20.46 Aligned_cols=81 Identities=23% Similarity=0.222 Sum_probs=54.2
Q ss_pred EEEEE-ECCCCCCCCCCHHH-HHHHHHHHHHHHCCHHHHCCCCCCCEEEECCC-CCCCCCCHHHHHHHHHHHCCCCCEEE
Q ss_conf 17887-20347778999889-99999999842013243138985001001269-82466780267769988769960059
Q gi|254780359|r 91 FTVSV-DSKHGITTGISADD-RAYTIKNLANPHSIADNFVRPGHIFPLISRDG-GVLVRPGHTEASVDLCKITGLPPIAV 167 (210)
Q Consensus 91 Ftvsv-d~~~g~tTGISa~D-Ra~TIr~la~~~~~~~df~~PGHV~pL~a~~g-Gvl~R~GHTEaavdL~~lAGl~P~~v 167 (210)
|+.-| ||--++|+=|-..| -..|-+.+.=-++..-+--.=+|++++...+| .+++|.|.++.+|.=-+-.|+.|-|+
T Consensus 198 la~VVDD~~M~ITHVIRGedhlsnTpkqi~ly~Alg~~~P~faHlPLi~~~dg~KLSKR~g~~~~sv~~yre~GylPeAl 277 (489)
T PRK00574 198 FAVVVDDHLMEITHVIRGEDHISNTPKQIMIYEAFGWEPPKFGHMPLILNEDRKKLSKRDGATLQFIEDYRELGYLPEAI 277 (489)
T ss_pred ECCCCCCCCCCCCEEECCHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCHHH
T ss_conf 12114751258764303521577639999999982899974785111378999816666797015799999879866699
Q ss_pred EEEE
Q ss_conf 8885
Q gi|254780359|r 168 ICEL 171 (210)
Q Consensus 168 i~Ei 171 (210)
+-=|
T Consensus 278 ~NyL 281 (489)
T PRK00574 278 FNFI 281 (489)
T ss_pred HHHH
T ss_conf 9999
No 28
>TIGR00789 flhB_rel FlhB domain protein; InterPro: IPR004683 This group describes a short protein (80-93 residues) homologous to the C-terminus of the flagellar biosynthetic protein FlhB. It is found so far only in species that also have FlhB. In a phylogenetic tree based on alignment of both this family and the homologous region of FlhB and its homologs, the members of this family form a monophyletic set..
Probab=60.17 E-value=7.5 Score=20.28 Aligned_cols=36 Identities=25% Similarity=0.350 Sum_probs=29.6
Q ss_pred CCCCCCHHHHHHHHHHHCCCEEEHHHHHHHHHHCCC
Q ss_conf 875059899999999838907779999999984379
Q gi|254780359|r 175 DGTIKKGKQVIEFSKKYDLKIISVQDLIAWRKKKEI 210 (210)
Q Consensus 175 ~G~~~~~~~~~~fA~~~~lp~i~i~dli~yr~~~ei 210 (210)
.|.-.--+-..+.|++||+|+.+=.+||+-.++.+|
T Consensus 23 sG~GevA~~II~~AK~~gipi~ed~~L~~~L~~l~l 58 (84)
T TIGR00789 23 SGVGEVAEKIIELAKKHGIPIKEDEDLVDVLLKLDL 58 (84)
T ss_pred CCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCC
T ss_conf 167657889999997638997658289998744054
No 29
>PTZ00336 elongation factor 1-alpha; Provisional
Probab=58.06 E-value=17 Score=18.03 Aligned_cols=59 Identities=19% Similarity=0.281 Sum_probs=37.8
Q ss_pred CEEEECCCCCCC----CCCHHHHHHHHHHHCCCCCEEEEEEEECC---CCCCCCHH----HHHHHHHHHC
Q ss_conf 010012698246----67802677699887699600598885368---87505989----9999999838
Q gi|254780359|r 134 FPLISRDGGVLV----RPGHTEASVDLCKITGLPPIAVICELVND---DGTIKKGK----QVIEFSKKYD 192 (210)
Q Consensus 134 ~pL~a~~gGvl~----R~GHTEaavdL~~lAGl~P~~vi~Eil~~---~G~~~~~~----~~~~fA~~~~ 192 (210)
..+++...|..+ +.|+|.--..|+++.|.+...|..-=||+ +..-.+.+ ++..|.++.+
T Consensus 113 iLVVdA~~G~~e~g~~~~gQTreHl~i~~~Lgv~~iiV~vNKmD~~~v~~~~~r~~~i~~e~~~~l~~~g 182 (449)
T PTZ00336 113 ILMIDSTHGGFEAGISKDGQTREHALLAFTLGVKQMVVCCNKMDDKTVTYAQSRYDEISKEVGAYLKRVG 182 (449)
T ss_pred EEEEECCCCCEECCCCCCCCCHHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCC
T ss_conf 9999878774103556677539999999866997799998620156621137899999999999998749
No 30
>PRK00304 hypothetical protein; Provisional
Probab=58.04 E-value=13 Score=18.86 Aligned_cols=26 Identities=31% Similarity=0.479 Sum_probs=21.7
Q ss_pred CCCHHHHHHHHHHHHCCCEEEEEECCC
Q ss_conf 779566999999996898299996778
Q gi|254780359|r 6 SLDERYIEDVIQSFQKGEMVIVTDADD 32 (210)
Q Consensus 6 ~~~~~~ie~ai~al~~G~~Viv~D~~d 32 (210)
++ ..+|+++..+|++|+.+||||...
T Consensus 33 sL-e~Kv~qV~~qL~~Ge~vivfd~~~ 58 (75)
T PRK00304 33 PL-ETRVLRVRHALTKGQAVILFDPES 58 (75)
T ss_pred CH-HHHHHHHHHHHHCCCEEEEECCCC
T ss_conf 79-999999999997599899987887
No 31
>PRK08462 biotin carboxylase; Validated
Probab=56.33 E-value=15 Score=18.42 Aligned_cols=28 Identities=14% Similarity=0.133 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHCCCCCEEEEEEEECCCC
Q ss_conf 0267769988769960059888536887
Q gi|254780359|r 149 HTEASVDLCKITGLPPIAVICELVNDDG 176 (210)
Q Consensus 149 HTEaavdL~~lAGl~P~~vi~Eil~~~G 176 (210)
-.++|+.|++-.|..-++.+-=++|.++
T Consensus 257 m~~~A~~la~~vgY~gaGTvEFl~d~~~ 284 (446)
T PRK08462 257 LLETAIKAAKAIGYVGAGTFEFLLDSNM 284 (446)
T ss_pred HHHHHHHHHHHCCCCCCCEEEEEECCCC
T ss_conf 8889999998648365433899980799
No 32
>pfam11305 DUF3107 Protein of unknown function (DUF3107). Some members in this family of proteins are annotated as ATP-binding proteins however this cannot be confirmed. Currently no function is known.
Probab=55.78 E-value=14 Score=18.60 Aligned_cols=34 Identities=21% Similarity=0.429 Sum_probs=24.2
Q ss_pred HHHHHHH-HHHHCCCEEE-EEECCCCCCCCCEEEEHHHCC
Q ss_conf 6699999-9996898299-996778988701334844599
Q gi|254780359|r 10 RYIEDVI-QSFQKGEMVI-VTDADDRENEADLVLAAIHCT 47 (210)
Q Consensus 10 ~~ie~ai-~al~~G~~Vi-v~D~~dREnEgDlv~~Ae~vt 47 (210)
..|++.+ +||+.|.+++ +.|+.+|+ .++||..+.
T Consensus 23 ~ev~~~v~~Al~~~~~~l~LtD~kGr~----vlVpa~~ia 58 (74)
T pfam11305 23 EEVEALVAEALADGSGVLSLTDDKGRR----VLVPAAALA 58 (74)
T ss_pred HHHHHHHHHHHHCCCCEEEEEECCCCE----EEEECCCEE
T ss_conf 999999999984899769989389989----999855289
No 33
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=54.71 E-value=20 Score=17.69 Aligned_cols=46 Identities=15% Similarity=0.362 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHCCCEEE
Q ss_conf 0267769988769960059888536887505989999999983890777
Q gi|254780359|r 149 HTEASVDLCKITGLPPIAVICELVNDDGTIKKGKQVIEFSKKYDLKIIS 197 (210)
Q Consensus 149 HTEaavdL~~lAGl~P~~vi~Eil~~~G~~~~~~~~~~fA~~~~lp~i~ 197 (210)
-++..+++++-.|. |++++..+.+ ......++.++|++++++|++-
T Consensus 131 d~~r~i~l~~~~~~-~~gvV~Nr~~--~~~~~~~~i~~~~~~~~vp~LG 176 (179)
T cd03110 131 DLERAVELVRHFGI-PVGVVINKYD--LNDEIAEEIEDYCEEEGIPILG 176 (179)
T ss_pred HHHHHHHHHHHCCC-CEEEEEECCC--CCCCCHHHHHHHHHHHCCCEEE
T ss_conf 99999999998299-7899996887--8876348999999980999898
No 34
>TIGR00513 accA acetyl-CoA carboxylase, carboxyl transferase, alpha subunit; InterPro: IPR001095 This entry contains the alpha subunit the acetyl coenzyme A carboxylase complex (). It catalyzes the first step in the synthesis of long-chain fatty acids which involves the carboxylation of acetyl-CoA to malonyl-CoA. The acetyl-CoA carboxylase complex () is a heterohexamer of biotin carboxyl carrier protein, biotin carboxylase and two non-identical carboxyl transferase subunits (alpha and beta) in a 2:2 association . The reaction involves two steps: Biotin carrier protein + ATP + HCO_3^- -> Carboxybiotin carrier protein + ADP + P_i Carboxybiotin carrier protein + Acetyl-CoA -> Malonyl-CoA + Biotin carrier protein ; GO: 0003989 acetyl-CoA carboxylase activity, 0006633 fatty acid biosynthetic process, 0009317 acetyl-CoA carboxylase complex.
Probab=52.47 E-value=20 Score=17.61 Aligned_cols=54 Identities=28% Similarity=0.529 Sum_probs=43.1
Q ss_pred HCCHHHHCCCCCCCEEE----ECCCCCCCCCCHHHH-HHHHHHHCCCCCEEEEEEEECCCCC
Q ss_conf 01324313898500100----126982466780267-7699887699600598885368875
Q gi|254780359|r 121 HSIADNFVRPGHIFPLI----SRDGGVLVRPGHTEA-SVDLCKITGLPPIAVICELVNDDGT 177 (210)
Q Consensus 121 ~~~~~df~~PGHV~pL~----a~~gGvl~R~GHTEa-avdL~~lAGl~P~~vi~Eil~~~G~ 177 (210)
-..++-|..| |--++ |-||==.+-+|..|| |.-|-+||+|. |=|||-++.+-|+
T Consensus 152 m~~AerF~~P--Ii~fiDT~GAYPGigAEerGQsEAIA~NL~Ema~L~-VPvic~vIGEGGS 210 (329)
T TIGR00513 152 MKMAERFNLP--IITFIDTPGAYPGIGAEERGQSEAIAKNLREMARLK-VPVICTVIGEGGS 210 (329)
T ss_pred HHHHHHCCCC--EEEEECCCCCCCCCHHHHHCCHHHHHHHHHHHHCCC-CCEEEEEECCCCC
T ss_conf 9877761798--588653888875620445052789999989971099-8879998526861
No 35
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=52.01 E-value=22 Score=17.41 Aligned_cols=62 Identities=19% Similarity=0.368 Sum_probs=46.2
Q ss_pred CCCCCHHHHHHHHHHHHHHHCCHH-----HHCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEE
Q ss_conf 789998899999999984201324-----313898500100126982466780267769988769960059888
Q gi|254780359|r 102 TTGISADDRAYTIKNLANPHSIAD-----NFVRPGHIFPLISRDGGVLVRPGHTEASVDLCKITGLPPIAVICE 170 (210)
Q Consensus 102 tTGISa~DRa~TIr~la~~~~~~~-----df~~PGHV~pL~a~~gGvl~R~GHTEaavdL~~lAGl~P~~vi~E 170 (210)
|.++|-.+ +++....|+ .|-.|-|+.||+---.|-...+--.+.+.++++-.|..|+.|--+
T Consensus 114 TSsl~is~-------ia~~~~~p~R~ig~HffnP~~~m~LVEIv~g~~Ts~~~~~~~~~~~~~~gk~pvvv~kd 180 (310)
T PRK06130 114 TSGLSINA-------IAQAVTRRERFVGTHFFTPADVIPLVEVVRNDDTSPQTVATVMAMLRSIGKRPVLVKKD 180 (310)
T ss_pred CCCCCCHH-------HHHHCCCHHHEEEEEECCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHCCCEEEEECCC
T ss_conf 88776067-------88863898781554443776776665223789898999999999999719879998866
No 36
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=48.82 E-value=24 Score=17.10 Aligned_cols=48 Identities=23% Similarity=0.438 Sum_probs=25.1
Q ss_pred CCCCCCHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHCCCEE
Q ss_conf 246678026776998876996005988853688750598999999998389077
Q gi|254780359|r 143 VLVRPGHTEASVDLCKITGLPPIAVICELVNDDGTIKKGKQVIEFSKKYDLKII 196 (210)
Q Consensus 143 vl~R~GHTEaavdL~~lAGl~P~~vi~Eil~~~G~~~~~~~~~~fA~~~~lp~i 196 (210)
++.+-|---.+..++..||++- +...+|..-..+++++||+++|+|++
T Consensus 115 ~ld~~GdKv~Ar~~A~~agvPv------ipgt~~~~~~~ee~~~fa~~~gyPvm 162 (1149)
T COG1038 115 VLDMLGDKVKARNAAIKAGVPV------IPGTDGPIETIEEALEFAEEYGYPVM 162 (1149)
T ss_pred HHHHHCCHHHHHHHHHHCCCCC------CCCCCCCCCCHHHHHHHHHHCCCCEE
T ss_conf 9988442888999999759985------56999982129999999986698589
No 37
>COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]
Probab=48.62 E-value=24 Score=17.08 Aligned_cols=33 Identities=15% Similarity=0.217 Sum_probs=20.0
Q ss_pred CEEEEEEEEC-CCCCCCCHHHHHHHHHHHCCCEE
Q ss_conf 0059888536-88750598999999998389077
Q gi|254780359|r 164 PIAVICELVN-DDGTIKKGKQVIEFSKKYDLKII 196 (210)
Q Consensus 164 P~~vi~Eil~-~~G~~~~~~~~~~fA~~~~lp~i 196 (210)
.-+|++|.+. +.++....+.+-+.|.+|++|++
T Consensus 148 Tkavf~EtigNP~~~v~Die~ia~iAh~~gvpli 181 (426)
T COG2873 148 TKAVFAETIGNPGLDVLDIEAIAEIAHRHGVPLI 181 (426)
T ss_pred CCEEEEEECCCCCCCCCCHHHHHHHHHHCCCCEE
T ss_conf 4068787516887663577999999987599389
No 38
>COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=47.46 E-value=19 Score=17.75 Aligned_cols=101 Identities=16% Similarity=0.198 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEEHHHCCHHHHHHHHHH-CCCCEEEECC---------HHHHHHHHCCCC
Q ss_conf 669999999968982999967789887013348445999999999970-8994586146---------899987403643
Q gi|254780359|r 10 RYIEDVIQSFQKGEMVIVTDADDRENEADLVLAAIHCTSEKMAFIIRH-TCGIVCTPMP---------FHTAHKLKLNPM 79 (210)
Q Consensus 10 ~~ie~ai~al~~G~~Viv~D~~dREnEgDlv~~Ae~vt~e~i~fm~~~-~~Glic~al~---------~~~~~~L~Lp~m 79 (210)
.-+-.+-..+-.|--.+.+|-+ ++ + + -++++.+.-.++. .+.+|+|-+- .+.|++-+|+.+
T Consensus 83 TfvATan~i~~~Ga~PVFvDid-~~--T-~-----nid~~~ie~aIt~~tKAIipVhl~G~~~dm~~i~~la~~~~l~vI 153 (374)
T COG0399 83 TFVATANAVLLVGAKPVFVDID-PD--T-L-----NIDPDLIEAAITPRTKAIIPVHLAGQPCDMDAIMALAKRHGLPVI 153 (374)
T ss_pred CHHHHHHHHHHCCCEEEEEECC-CC--C-C-----CCCHHHHHHHCCCCCEEEEEEHHCCCCCCHHHHHHHHHHCCCEEE
T ss_conf 5398899999769967999647-64--1-4-----779999998715577499985121687798999999987398499
Q ss_pred CCC---CC--------CCCCCCEEEEEECCCCCCCC------CCHHHHHHHHHHHHH
Q ss_conf 244---56--------65665217887203477789------998899999999984
Q gi|254780359|r 80 VLE---NE--------SVHKTAFTVSVDSKHGITTG------ISADDRAYTIKNLAN 119 (210)
Q Consensus 80 ~~~---n~--------~~~~taFtvsvd~~~g~tTG------ISa~DRa~TIr~la~ 119 (210)
.-- .. ...+..-+.|......+||| ..+.+-+.-++.|.+
T Consensus 154 EDaAqa~Ga~y~gk~vGt~Gd~~~fSF~~~K~ittgEGGav~tnd~ela~k~~~lr~ 210 (374)
T COG0399 154 EDAAQAHGATYKGKKVGSFGDIGAFSFHATKNLTTGEGGAVVTNDEELAEKARSLRN 210 (374)
T ss_pred EECCHHCCCEECCCCCCCCCCEEEEEECCCCCCCCCCCEEEEECCHHHHHHHHHHHH
T ss_conf 876032067235842556664689986587765566750798388999999999998
No 39
>PRK03643 altronate oxidoreductase; Provisional
Probab=47.43 E-value=18 Score=17.83 Aligned_cols=44 Identities=20% Similarity=0.544 Sum_probs=31.0
Q ss_pred CCCCCEEEE-EEEECCCCCCCCHHHHHHHHHHHCCCEEEHHHHHHHHHHC
Q ss_conf 699600598-8853688750598999999998389077799999999843
Q gi|254780359|r 160 TGLPPIAVI-CELVNDDGTIKKGKQVIEFSKKYDLKIISVQDLIAWRKKK 208 (210)
Q Consensus 160 AGl~P~~vi-~Eil~~~G~~~~~~~~~~fA~~~~lp~i~i~dli~yr~~~ 208 (210)
++.+|..|+ ||.+.++|+.+ +.-+.+||+.++++ .+++.|-.++
T Consensus 159 ~~~~~~tvlsCDNl~~NG~~L-r~~Vl~~A~~~~~d----~~~~~Wi~~~ 203 (482)
T PRK03643 159 AADKGWIIIPCELIDYNGEAL-KELVLRYAQEWNLP----EAFIQWLEEA 203 (482)
T ss_pred CCCCCEEEEECCCHHHHHHHH-HHHHHHHHHHHCCC----HHHHHHHHHH
T ss_conf 788863898466757789999-99999999984789----7899999972
No 40
>PRK13122 consensus
Probab=46.89 E-value=6.7 Score=20.60 Aligned_cols=14 Identities=14% Similarity=0.619 Sum_probs=9.3
Q ss_pred CCCCEEEECCHHHH
Q ss_conf 89945861468999
Q gi|254780359|r 58 TCGIVCTPMPFHTA 71 (210)
Q Consensus 58 ~~Glic~al~~~~~ 71 (210)
..|+|+.=+|.+..
T Consensus 104 vdGvIipDLP~ee~ 117 (242)
T PRK13122 104 VYGLIIPDLPYELS 117 (242)
T ss_pred CCEEECCCCCHHHH
T ss_conf 98677789987889
No 41
>COG3049 Penicillin V acylase and related amidases [Cell envelope biogenesis, outer membrane]
Probab=46.88 E-value=26 Score=16.92 Aligned_cols=44 Identities=25% Similarity=0.213 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEEHHHCCHHHHH
Q ss_conf 56699999999689829999677898870133484459999999
Q gi|254780359|r 9 ERYIEDVIQSFQKGEMVIVTDADDRENEADLVLAAIHCTSEKMA 52 (210)
Q Consensus 9 ~~~ie~ai~al~~G~~Viv~D~~dREnEgDlv~~Ae~vt~e~i~ 52 (210)
+++|++++++++++++|++.++.--++--.|=++..-.+-..+.
T Consensus 133 ~atVeEvk~~i~~~~~v~v~~~~~~~~~~plH~s~sDasG~S~i 176 (353)
T COG3049 133 FATVEEVKQAIDKIPFVIVALNDPGEGVAPLHYSLSDASGDSAI 176 (353)
T ss_pred CCCHHHHHHHHHCCCEEEEECCCCCCCCCCEEEEEECCCCCEEE
T ss_conf 36599999887449748985467788877636998758998489
No 42
>pfam04472 DUF552 Protein of unknown function (DUF552). Family of uncharacterized proteins.
Probab=46.50 E-value=21 Score=17.45 Aligned_cols=44 Identities=16% Similarity=0.262 Sum_probs=28.6
Q ss_pred CCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEEHHHCCHHHHHHHHHHCCCCEE
Q ss_conf 7795669999999968982999967789887013348445999999999970899458
Q gi|254780359|r 6 SLDERYIEDVIQSFQKGEMVIVTDADDRENEADLVLAAIHCTSEKMAFIIRHTCGIVC 63 (210)
Q Consensus 6 ~~~~~~ie~ai~al~~G~~Viv~D~~dREnEgDlv~~Ae~vt~e~i~fm~~~~~Glic 63 (210)
..+|+.++++.++|++|++|++-= +. +..+....++...+|.++
T Consensus 6 p~~~~D~~~i~~~l~~g~~Vivnl-~~-------------l~~~~a~RiiDfl~G~~~ 49 (73)
T pfam04472 6 PRSYEDAQEIADELRDGKIVIVNL-TR-------------LEKDQARRILDFLAGAVY 49 (73)
T ss_pred CCCHHHHHHHHHHHHHCCCEEEEC-CC-------------CCHHHHHHHHHHHHHHHH
T ss_conf 785899999999998699199997-68-------------998997889999720262
No 43
>PRK05586 biotin carboxylase; Validated
Probab=45.92 E-value=27 Score=16.82 Aligned_cols=29 Identities=24% Similarity=0.267 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHCCCCCEEEEEEEECCCCC
Q ss_conf 02677699887699600598885368875
Q gi|254780359|r 149 HTEASVDLCKITGLPPIAVICELVNDDGT 177 (210)
Q Consensus 149 HTEaavdL~~lAGl~P~~vi~Eil~~~G~ 177 (210)
--++++.|++..|..-++.+-=++|++|+
T Consensus 255 m~~~A~~la~~vgY~gaGTvEFl~d~~~~ 283 (447)
T PRK05586 255 MGEIAVKAAKAVNYKNAGTIEFLLDKDGN 283 (447)
T ss_pred HHHHHHHHHHHCCCCCCCEEEEEECCCCC
T ss_conf 99999988886060333247888758997
No 44
>LOAD_Toprim consensus
Probab=45.27 E-value=23 Score=17.18 Aligned_cols=28 Identities=29% Similarity=0.414 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHCCCEEEEEECCCCCCCC
Q ss_conf 6699999999689829999677898870
Q gi|254780359|r 10 RYIEDVIQSFQKGEMVIVTDADDRENEA 37 (210)
Q Consensus 10 ~~ie~ai~al~~G~~Viv~D~~dREnEg 37 (210)
..+.+.+..+++-+-|++.-|.|||||.
T Consensus 34 ~~~~~~~~~~~~~~~VilATDpDrEGEa 61 (98)
T LOAD_Toprim 34 KSVLELIKLALKAKEVIIATDPDREGEK 61 (98)
T ss_pred CHHHHHHHHHHCCCEEEEECCCCCCHHH
T ss_conf 1699999998469929994696965289
No 45
>pfam05198 IF3_N Translation initiation factor IF-3, N-terminal domain.
Probab=44.87 E-value=21 Score=17.52 Aligned_cols=31 Identities=13% Similarity=0.443 Sum_probs=21.6
Q ss_pred EEEECCCCCC---CCHHHHHHHHHHHCCCEEEHH
Q ss_conf 8853688750---598999999998389077799
Q gi|254780359|r 169 CELVNDDGTI---KKGKQVIEFSKKYDLKIISVQ 199 (210)
Q Consensus 169 ~Eil~~~G~~---~~~~~~~~fA~~~~lp~i~i~ 199 (210)
+-+++++|+. ++..++.+.|++.||-++.++
T Consensus 15 VrlI~~~G~~lGv~~~~eAl~~A~~~~LDLV~vs 48 (76)
T pfam05198 15 VRLIDEDGEQLGVVSRAEALRLAEEKGLDLVEIS 48 (76)
T ss_pred EEEECCCCCEECCEEHHHHHHHHHHCCCCEEEEC
T ss_conf 9998899929661769999999998499689989
No 46
>TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase. This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species.
Probab=44.00 E-value=22 Score=17.36 Aligned_cols=97 Identities=16% Similarity=0.105 Sum_probs=46.3
Q ss_pred HHHHHHHHHCCCEEEEEECCCCCCCCCEEEEHHHCCHHHHHHHHH-------------HCCCCEEEECC--HHHHHHHHC
Q ss_conf 999999996898299996778988701334844599999999997-------------08994586146--899987403
Q gi|254780359|r 12 IEDVIQSFQKGEMVIVTDADDRENEADLVLAAIHCTSEKMAFIIR-------------HTCGIVCTPMP--FHTAHKLKL 76 (210)
Q Consensus 12 ie~ai~al~~G~~Viv~D~~dREnEgDlv~~Ae~vt~e~i~fm~~-------------~~~Glic~al~--~~~~~~L~L 76 (210)
+-.+-..+..|--.+.+|= |.+ ++ .++++.+.-.++ |--|..| -+. .+.|++-+|
T Consensus 80 ~at~~ai~~~Ga~pvf~Dv-d~~---t~-----~id~~~l~~~it~~~~~ktkaIi~vh~~G~~~-d~~~i~~ia~~~~i 149 (380)
T TIGR03588 80 VATANCALYCGAKVDFVDI-DPD---TG-----NIDEDALEKKLAAAKGKLPKAIVPVDFAGKSV-DMQAIAALAKKHGL 149 (380)
T ss_pred HHHHHHHHHCCCEEEEEEC-CHH---HC-----CCCHHHHHHHHHHCCCCCCEEEEEECCCCEEC-CHHHHHHHHHHCCC
T ss_conf 8867999987996899844-100---01-----48988877777643677725999948985434-89999999998698
Q ss_pred CCCCCCC---------CCC-----CCCCEEEEEECCCCCCCC------CCHHHHHHHHHHHHH
Q ss_conf 6432445---------665-----665217887203477789------998899999999984
Q gi|254780359|r 77 NPMVLEN---------ESV-----HKTAFTVSVDSKHGITTG------ISADDRAYTIKNLAN 119 (210)
Q Consensus 77 p~m~~~n---------~~~-----~~taFtvsvd~~~g~tTG------ISa~DRa~TIr~la~ 119 (210)
+.. ++. ... ++..-+.|......++|| ..+.+-+..+|.|-+
T Consensus 150 ~lI-EDaA~a~Ga~~~gk~~Gs~~~gd~~~fSF~~~K~ittGeGG~i~tnd~~l~~~~r~lr~ 211 (380)
T TIGR03588 150 KII-EDASHALGAEYGGKPVGNCRYADATVFSFHPVKIITTAEGGAVTTNDEELAERMRLLRS 211 (380)
T ss_pred EEE-EECCCHHCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCEEEEECCHHHHHHHHHHHH
T ss_conf 899-98800115775787656644352467733555557778853999699999999999997
No 47
>COG3563 KpsC Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane]
Probab=43.51 E-value=17 Score=18.10 Aligned_cols=22 Identities=14% Similarity=0.496 Sum_probs=17.6
Q ss_pred CCHHHHHHHHHHHCCCEEEHHH
Q ss_conf 5989999999983890777999
Q gi|254780359|r 179 KKGKQVIEFSKKYDLKIISVQD 200 (210)
Q Consensus 179 ~~~~~~~~fA~~~~lp~i~i~d 200 (210)
...+.+.+||++|.+|+.-++|
T Consensus 371 ~~~~~lv~~A~~h~iPl~~~ED 392 (671)
T COG3563 371 NGKEALVEFAEQHHIPLLRMED 392 (671)
T ss_pred CCCHHHHHHHHHHCCCEEEECC
T ss_conf 8967899999870797034223
No 48
>TIGR01090 apt adenine phosphoribosyltransferase; InterPro: IPR005764 Adenine phosphoribosyltransferase (APRTase, 2.4.2.7 from EC) is a widely distributed enzyme, and its deficiency in humans causes the accumulation of 2,8-dihydroxyadenine. It is the sole catalyst for adenine recycling in most eukaryotes. AMP + diphosphate = adenine + 5-phospho-alpha-D-ribose 1-diphosphate ; GO: 0003999 adenine phosphoribosyltransferase activity, 0006168 adenine salvage.
Probab=43.33 E-value=15 Score=18.36 Aligned_cols=96 Identities=22% Similarity=0.318 Sum_probs=55.7
Q ss_pred CCCCEEEECCHHHHHHHHCCCCCC-CCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHCC-CCCCCE
Q ss_conf 899458614689998740364324-456656652178872034777899988999999999842013243138-985001
Q gi|254780359|r 58 TCGIVCTPMPFHTAHKLKLNPMVL-ENESVHKTAFTVSVDSKHGITTGISADDRAYTIKNLANPHSIADNFVR-PGHIFP 135 (210)
Q Consensus 58 ~~Glic~al~~~~~~~L~Lp~m~~-~n~~~~~taFtvsvd~~~g~tTGISa~DRa~TIr~la~~~~~~~df~~-PGHV~p 135 (210)
|||+| +....|-+||+++... ......+..+..|.|-=+|.- . -.-..|=.. ||+=..
T Consensus 59 aRGFi---fG~~LA~~LgvGFVPVRK~GKLP~~t~~~~Y~LEYG~d--------~---------lEIh~DA~~~~g~RVl 118 (175)
T TIGR01090 59 ARGFI---FGAALAYKLGVGFVPVRKPGKLPGETVSASYDLEYGKD--------S---------LEIHKDAIKIPGQRVL 118 (175)
T ss_pred CCHHH---HHHHHHHHHCCCEEEEECCCCCCCCEEEEEECEECCCC--------E---------EEEEHHHHHCCCCEEE
T ss_conf 67257---78899997089806754787668422667403004730--------3---------5341113640789089
Q ss_pred EEECCCCCCCCCCHHHHHHHHHHHCCCCCE--EEEEEEECCCC
Q ss_conf 001269824667802677699887699600--59888536887
Q gi|254780359|r 136 LISRDGGVLVRPGHTEASVDLCKITGLPPI--AVICELVNDDG 176 (210)
Q Consensus 136 L~a~~gGvl~R~GHTEaavdL~~lAGl~P~--~vi~Eil~~~G 176 (210)
++-. ++.=.|-.+|+..|.+-.|-.=+ +-+.|+-+=+|
T Consensus 119 iVDD---LlATGGT~~A~~eLi~~Lggev~~~aFliEL~~L~G 158 (175)
T TIGR01090 119 IVDD---LLATGGTAEATLELIKKLGGEVVEAAFLIELKDLNG 158 (175)
T ss_pred EEEC---CCCCHHHHHHHHHHHHHHCCEEEEEEEEEECCCCCC
T ss_conf 9832---201267899999999985961687455542244785
No 49
>PRK12410 glutamyl-tRNA synthetase; Provisional
Probab=42.72 E-value=30 Score=16.51 Aligned_cols=77 Identities=23% Similarity=0.324 Sum_probs=48.6
Q ss_pred EEEEEE-CCCCCCCCCCHHH-HHHHHHHHHHHHCCHHHHCCC---CCCCEEEECCC-CCCCCCCHHHHHHHHHHHCCCCC
Q ss_conf 178872-0347778999889-999999998420132431389---85001001269-82466780267769988769960
Q gi|254780359|r 91 FTVSVD-SKHGITTGISADD-RAYTIKNLANPHSIADNFVRP---GHIFPLISRDG-GVLVRPGHTEASVDLCKITGLPP 164 (210)
Q Consensus 91 Ftvsvd-~~~g~tTGISa~D-Ra~TIr~la~~~~~~~df~~P---GHV~pL~a~~g-Gvl~R~GHTEaavdL~~lAGl~P 164 (210)
|++.|| |--++|.=|-..| -..|-+.+.=-++. .+..| +|++.+...+| -+.+|.|-+ +|.--+-.|.-|
T Consensus 180 la~VVDD~~m~IThViRGeDhl~nT~kQi~l~~aL--g~~~P~~~~H~pli~~~~g~kLSKR~g~~--~i~~yre~GylP 255 (433)
T PRK12410 180 FACAVDDMLYDISFIIRGEDHVSNTPKQILIREAL--GYNKPITYAHLPIILNEEGKKMSKRDNAS--SVKWLLEQGFLP 255 (433)
T ss_pred EEEEECCCCCCCCEEECCHHHHHHHHHHHHHHHHC--CCCCCCEEECCCCEECCCCCCCCCCCCCC--CHHHHHHCCCCH
T ss_conf 22796488787400264285999999999999986--99998525320100189998556668983--888897679875
Q ss_pred EEEEEEE
Q ss_conf 0598885
Q gi|254780359|r 165 IAVICEL 171 (210)
Q Consensus 165 ~~vi~Ei 171 (210)
.|++-=+
T Consensus 256 eAl~NyL 262 (433)
T PRK12410 256 EAIANYL 262 (433)
T ss_pred HHHHHHH
T ss_conf 9999999
No 50
>pfam02603 Hpr_kinase_N HPr Serine kinase N terminus. This family represents the N-terminal region of Hpr Serine/threonine kinase PtsK. This kinase is the sensor in a multicomponent phospho-relay system in control of carbon catabolic repression in bacteria. This kinase in unusual in that it recognizes the tertiary structure of its target and is a member of a novel family unrelated to any previously described protein phosphorylating enzymes. X-ray analysis of the full-length crystalline enzyme from Staphylococcus xylosus at a resolution of 1.95 A shows the enzyme to consist of two clearly separated domains that are assembled in a hexameric structure resembling a three-bladed propeller. The blades are formed by two N-terminal domains each, and the compact central hub assembles the C-terminal kinase domains.
Probab=41.55 E-value=31 Score=16.40 Aligned_cols=69 Identities=16% Similarity=0.215 Sum_probs=55.7
Q ss_pred HHHCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHCCCEEEH
Q ss_conf 43138985001001269824667802677699887699600598885368875059899999999838907779
Q gi|254780359|r 125 DNFVRPGHIFPLISRDGGVLVRPGHTEASVDLCKITGLPPIAVICELVNDDGTIKKGKQVIEFSKKYDLKIISV 198 (210)
Q Consensus 125 ~df~~PGHV~pL~a~~gGvl~R~GHTEaavdL~~lAGl~P~~vi~Eil~~~G~~~~~~~~~~fA~~~~lp~i~i 198 (210)
-++..|-.|..+-..+-..+.+-...|.---+-++....|.++|.- . +...-+++.++|+++++|++.-
T Consensus 43 ~~~~~~~RIQi~G~~E~~yl~~l~~e~r~~~l~~l~~~~~P~iIvt---~--~~~~p~~l~~~a~~~~vPll~t 111 (127)
T pfam02603 43 FDYFPPERVQILGKTELSYLDQLTEEERKERLEKLFSYDTPCLIVT---R--GLEPPEELLEAAKKYGIPLLRS 111 (127)
T ss_pred CCCCCCCEEEEECHHHHHHHHHCCHHHHHHHHHHHHCCCCCEEEEE---C--CCCCCHHHHHHHHHHCCCEEEC
T ss_conf 6457987599985799999996999999999999857599889997---9--9999999999999979957982
No 51
>cd01999 Argininosuccinate_Synthase Argininosuccinate synthase. The Argininosuccinate synthase is a urea cycle enzyme that catalyzes the penultimate step in arginine biosynthesis: the ATP-dependent ligation of citrulline to aspartate to form argininosuccinate, AMP and pyrophosphate . In humans, a defect in the AS gene causes citrullinemia, a genetic disease characterized by severe vomiting spells and mental retardation. AS is a homotetrameric enzyme of chains of about 400 amino-acid residues. An arginine seems to be important for the enzyme's catalytic mechanism. The sequences of AS from various prokaryotes, archaebacteria and eukaryotes show significant similarity
Probab=40.45 E-value=33 Score=16.30 Aligned_cols=32 Identities=13% Similarity=0.277 Sum_probs=19.7
Q ss_pred CCEEEEEEEECCCCCCCCHHHHHHHHHHHCCCEE
Q ss_conf 6005988853688750598999999998389077
Q gi|254780359|r 163 PPIAVICELVNDDGTIKKGKQVIEFSKKYDLKII 196 (210)
Q Consensus 163 ~P~~vi~Eil~~~G~~~~~~~~~~fA~~~~lp~i 196 (210)
+..-||+..-+. +.+++++..+||++||+|+-
T Consensus 133 P~l~iiAP~Rd~--~~~sR~~~i~ya~~~gi~v~ 164 (385)
T cd01999 133 PDLKIIAPWRDW--EFLSREEEIEYAEEHGIPVP 164 (385)
T ss_pred CCCEEEEEEECC--CCCCHHHHHHHHHHCCCCCC
T ss_conf 997585147314--44888999999998599988
No 52
>PRK13121 consensus
Probab=40.17 E-value=13 Score=18.88 Aligned_cols=22 Identities=14% Similarity=0.380 Sum_probs=14.0
Q ss_pred CCCCEEEECCHHHH-------HHHHCCCC
Q ss_conf 89945861468999-------87403643
Q gi|254780359|r 58 TCGIVCTPMPFHTA-------HKLKLNPM 79 (210)
Q Consensus 58 ~~Glic~al~~~~~-------~~L~Lp~m 79 (210)
..|+|+.=+|.+.. ++.+|.+.
T Consensus 123 vdGlIipDLP~eE~~~~~~~~~~~gl~~I 151 (265)
T PRK13121 123 VDGVLVVDYPPEECEEFAAKMRAAGIDPI 151 (265)
T ss_pred CCEEECCCCCHHHHHHHHHHHHHCCCCEE
T ss_conf 87343489998999999999986599668
No 53
>TIGR00709 dat 2,4-diaminobutyrate 4-transaminase; InterPro: IPR004637 This is a very small family, with two known examples at the time of model creation. This enzyme is a pyridoxal phosphate-containing class III aminotransferase and is quite similar to 4-aminobutyrate aminotransferase (2.6.1.19 from EC). Diaminobutyrate-2-oxoglutarate transaminase (2.6.1.76 from EC) is a homotetramer which catalyses the conversion of L-2,4-diaminobutyrate and 2-oxoglutarate to L-glutamate and L-aspartic 4-semialdehyde during 1,3-diaminopropane biosynthesis.; GO: 0008483 transaminase activity, 0009058 biosynthetic process.
Probab=38.96 E-value=34 Score=16.17 Aligned_cols=36 Identities=31% Similarity=0.458 Sum_probs=28.1
Q ss_pred CCCEEEEEEEECCCCCCC--C---HHHHHHHHHHHCCCEEE
Q ss_conf 960059888536887505--9---89999999983890777
Q gi|254780359|r 162 LPPIAVICELVNDDGTIK--K---GKQVIEFSKKYDLKIIS 197 (210)
Q Consensus 162 l~P~~vi~Eil~~~G~~~--~---~~~~~~fA~~~~lp~i~ 197 (210)
.+|+|||.|-+.-+|-+. + +...++..++|+|.+|-
T Consensus 206 ~KPAA~I~E~iQGEGG~~~A~~~wL~~i~~v~~~~~I~lIl 246 (445)
T TIGR00709 206 DKPAAVILEAIQGEGGVVAAPVEWLQKIREVTRKHDIKLIL 246 (445)
T ss_pred CCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEE
T ss_conf 57604688633078851022479999999987427847998
No 54
>pfam04471 Mrr_cat Restriction endonuclease. Prokaryotic family found in type II restriction enzymes containing the hallmark (D/E)-(D/E)XK active site. Presence of catalytic residues implicates this region in the enzymatic cleavage of DNA.
Probab=38.59 E-value=17 Score=18.04 Aligned_cols=23 Identities=17% Similarity=0.341 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHCCCEEEHHHHHH
Q ss_conf 89999999983890777999999
Q gi|254780359|r 181 GKQVIEFSKKYDLKIISVQDLIA 203 (210)
Q Consensus 181 ~~~~~~fA~~~~lp~i~i~dli~ 203 (210)
-+++.+||+.+++-++++++|++
T Consensus 76 T~~A~~~A~~~~i~Lid~~~Lir 98 (98)
T pfam04471 76 TSAARELAEARGIELIDREELIR 98 (98)
T ss_pred CHHHHHHHHHCCEEEECHHHHCC
T ss_conf 98899999769979988688359
No 55
>TIGR01051 topA_bact DNA topoisomerase I; InterPro: IPR005733 DNA topoisomerases regulate the number of topological links between two DNA strands (i.e. change the number of superhelical turns) by catalysing transient single- or double-strand breaks, crossing the strands through one another, then resealing the breaks. These enzymes have several functions: to remove DNA supercoils during transcription and DNA replication; for strand breakage during recombination; for chromosome condensation; and to disentangle intertwined DNA during mitosis , . DNA topoisomerases are divided into two classes: type I enzymes (5.99.1.2 from EC; topoisomerases I, III and V) break single-strand DNA, and type II enzymes (5.99.1.3 from EC; topoisomerases II, IV and VI) break double-strand DNA . Type I topoisomerases are ATP-independent enzymes (except for reverse gyrase), and can be subdivided according to their structure and reaction mechanisms: type IA (bacterial and archaeal topoisomerase I, topoisomerase III and reverse gyrase) and type IB (eukaryotic topoisomerase I and topoisomerase V). These enzymes are primarily responsible for relaxing positively and/or negatively supercoiled DNA, except for reverse gyrase, which can introduce positive supercoils into DNA. This entry describes topoisomerase I from bacteria, which is more closely related to archaeal than to eukaryotic topoisomerase I . Topoisomerase I is the major enzyme for relaxing negatively supercoiled DNA, and its presence is balanced by reverse gyrase, which can introduce negative supercoils. Prokaryotic topoisomerase I folds in an unusual way to give 4 distinct domains, enclosing a hole large enough to accommodate a double-stranded DNA segment. A tyrosine at the active site, which lies at the interface of 2 domains, is involved in transient breakage of a DNA strand, and the formation of a covalent protein-DNA intermediate through a 5-phosphotyrosine linkage. The structure reveals a plausible mechanism by which this and related enzymes could catalyse the passage of one DNA strand through a transient break in another strand . Topoisomerase I require Mg2+ as a cofactor for catalysis to take place. More information about this protein can be found at Protein of the Month: DNA Topoisomerase .; GO: 0003677 DNA binding, 0003917 DNA topoisomerase type I activity, 0006265 DNA topological change, 0006268 DNA unwinding during replication, 0005694 chromosome.
Probab=38.36 E-value=32 Score=16.32 Aligned_cols=30 Identities=23% Similarity=0.390 Sum_probs=24.4
Q ss_pred CHHHHHHHHHHHHCCCEEEEEECCCCCCCC
Q ss_conf 956699999999689829999677898870
Q gi|254780359|r 8 DERYIEDVIQSFQKGEMVIVTDADDRENEA 37 (210)
Q Consensus 8 ~~~~ie~ai~al~~G~~Viv~D~~dREnEg 37 (210)
+..-|++..+..++-+-|+|-=|.|||||.
T Consensus 76 K~~~V~~L~~lakkA~~~yLAtD~DREGEA 105 (688)
T TIGR01051 76 KKKVVKELKTLAKKADEVYLATDPDREGEA 105 (688)
T ss_pred HHHHHHHHHHHHHHCCEEEECCCCCCCHHH
T ss_conf 447899999998731615640488854025
No 56
>PRK13136 consensus
Probab=36.88 E-value=8 Score=20.12 Aligned_cols=22 Identities=23% Similarity=0.463 Sum_probs=13.5
Q ss_pred CCCCEEEECCHHHHH-------HHHCCCC
Q ss_conf 899458614689998-------7403643
Q gi|254780359|r 58 TCGIVCTPMPFHTAH-------KLKLNPM 79 (210)
Q Consensus 58 ~~Glic~al~~~~~~-------~L~Lp~m 79 (210)
..|+|+.-||.+.++ +.+|.+.
T Consensus 116 vdGlIipDLP~eE~~~~~~~~~~~~i~~I 144 (253)
T PRK13136 116 VDGCLVVDLPVEEAAPHLTACKTAKIAPI 144 (253)
T ss_pred CCCEECCCCCHHHHHHHHHHHHHCCCCCE
T ss_conf 87200678997776999999997588712
No 57
>TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative; InterPro: IPR010962 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). PLP is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination , , . PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors . Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy . PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalyzed reactions, enzymatic and non-enzymatic . This entry contains a number of enzyme families: Serine palmitoyltransferase Glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase) 5-aminolevulinic acid synthase 8-amino-7-oxononanoate synthase All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions.; GO: 0016740 transferase activity, 0030170 pyridoxal phosphate binding.
Probab=36.77 E-value=18 Score=17.91 Aligned_cols=21 Identities=29% Similarity=0.631 Sum_probs=15.8
Q ss_pred CCCCCCHHHHHHHHHHHCCCE
Q ss_conf 875059899999999838907
Q gi|254780359|r 175 DGTIKKGKQVIEFSKKYDLKI 195 (210)
Q Consensus 175 ~G~~~~~~~~~~fA~~~~lp~ 195 (210)
||+.|++|++.+.|++++.-+
T Consensus 181 DGdvApLp~iVE~Ae~Yda~~ 201 (392)
T TIGR01825 181 DGDVAPLPEIVELAEKYDALV 201 (392)
T ss_pred CCCCCCCCHHHHHHHHCCCEE
T ss_conf 678788732334632459579
No 58
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type; InterPro: IPR004634 Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes . They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence . Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases . Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base . The geometric orientations of the catalytic residues are similar between families, despite different protein folds . The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) , . Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. This group of serine peptidases belong to MEROPS peptidase family S49 (protease IV family, clan S-). The predicted active site serine for members of this family occurs in a transmembrane domain. Signal peptides of secretory proteins seem to serve at least two important biological functions. First, they are required for protein targeting to and translocation across membranes, such as the eubacterial plasma membrane and the endoplasmic reticular membrane of eukaryotes. Second, in addition to their role as determinants for protein targeting and translocation, certain signal peptides have a signalling function. During or shortly after pre-protein translocation, the signal peptide is removed by signal peptidases. The integral membrane protein, SppA (protease IV), of Escherichia coli was shown experimentally to degrade signal peptides. The member of this family from Bacillus subtilis has only been shown to be required for efficient processing of pre-proteins under conditions of hyper-secretion . These enzymes have a molecular mass around 67 kDa and a duplication such that the N-terminal half shares extensive homology with the C-terminal half and was shown in E. coli to form homotetramers. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both. ; GO: 0009003 signal peptidase activity, 0006465 signal peptide processing, 0016021 integral to membrane.
Probab=36.73 E-value=33 Score=16.26 Aligned_cols=83 Identities=19% Similarity=0.203 Sum_probs=48.0
Q ss_pred CHHHHHHHHHHHH-CCCEEEEEECCCCCCCCCEEEEHHHCCHHHHHHHHHHCCCCEEEECCHHHHHHHHCCCCCC--CCC
Q ss_conf 9566999999996-8982999967789887013348445999999999970899458614689998740364324--456
Q gi|254780359|r 8 DERYIEDVIQSFQ-KGEMVIVTDADDRENEADLVLAAIHCTSEKMAFIIRHTCGIVCTPMPFHTAHKLKLNPMVL--ENE 84 (210)
Q Consensus 8 ~~~~ie~ai~al~-~G~~Viv~D~~dREnEgDlv~~Ae~vt~e~i~fm~~~~~Glic~al~~~~~~~L~Lp~m~~--~n~ 84 (210)
++.-|+.||..|| +||||++|-.. |+-|-.++ ...|+++-|.||=. -|.
T Consensus 117 ~l~~~~~AL~~Fk~SgKpv~ay~~n-------------------------YS~~~YYL---AsfAd~I~L~p~G~Vdl~G 168 (614)
T TIGR00705 117 ALSEIGKALSEFKDSGKPVYAYGEN-------------------------YSQGQYYL---ASFADEILLNPMGSVDLHG 168 (614)
T ss_pred CHHHHHHHHHHHHHCCCEEEEEECC-------------------------CCCHHHHH---HHHHHHHHCCCCCCEECCC
T ss_conf 2798899999998569908998525-------------------------34023688---7654024036887245035
Q ss_pred CCCCCC---------------EEEEEE--CCCC-CCCCCCHHHHHHHHHHHH
Q ss_conf 656652---------------178872--0347-778999889999999998
Q gi|254780359|r 85 SVHKTA---------------FTVSVD--SKHG-ITTGISADDRAYTIKNLA 118 (210)
Q Consensus 85 ~~~~ta---------------Ftvsvd--~~~g-~tTGISa~DRa~TIr~la 118 (210)
-..++= |.|.+- +.+= +-.-.|+.-|...-+.|+
T Consensus 169 l~~~~Lfy~~~l~K~~v~~~~~rvG~YKgavEpF~R~d~SPe~r~~~q~~l~ 220 (614)
T TIGR00705 169 LATETLFYKGMLDKLGVSVHVFRVGTYKGAVEPFLREDMSPEARENQQRWLG 220 (614)
T ss_pred CCCCCCCHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 2447640887997612862168962102421423555668888999999999
No 59
>PRK10949 protease 4; Provisional
Probab=36.55 E-value=37 Score=15.91 Aligned_cols=93 Identities=19% Similarity=0.214 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHH-CCCEEEEEECCCCCCCCCEEEEHHHCCHHHHHHHHHHCCCCEE-EECC------HHHHHHHHCCCCC
Q ss_conf 566999999996-8982999967789887013348445999999999970899458-6146------8999874036432
Q gi|254780359|r 9 ERYIEDVIQSFQ-KGEMVIVTDADDRENEADLVLAAIHCTSEKMAFIIRHTCGIVC-TPMP------FHTAHKLKLNPMV 80 (210)
Q Consensus 9 ~~~ie~ai~al~-~G~~Viv~D~~dREnEgDlv~~Ae~vt~e~i~fm~~~~~Glic-~al~------~~~~~~L~Lp~m~ 80 (210)
...|.+||+.|| +||||+-+.+.=-+..-.|--.|..+- + +-.|.+. ..+. ++..++|++.+-+
T Consensus 131 l~eI~~AL~~FK~SGK~ViAy~d~ysq~~YyLAS~AD~I~-------L-~P~G~v~l~Gl~~~~~y~K~lLdKlgI~~~v 202 (618)
T PRK10949 131 MQYIGKALREFRDSGKPVYAVGDNYSQGQYYLASFANKIW-------L-SPQGVVDLHGFATNGLYYKSLLDKLKVSTHV 202 (618)
T ss_pred HHHHHHHHHHHHHHCCEEEEEECCCCCCCEEEEEECCEEE-------E-CCCCEEEEECCCHHHHHHHHHHHHCCCEEEE
T ss_conf 9999999999998199399996677853010211077789-------8-8996687866301177899999974982899
Q ss_pred CCCCCCCCCCEEEEEECCCC-CCCCCCHHHHHHHHHHH
Q ss_conf 44566566521788720347-77899988999999999
Q gi|254780359|r 81 LENESVHKTAFTVSVDSKHG-ITTGISADDRAYTIKNL 117 (210)
Q Consensus 81 ~~n~~~~~taFtvsvd~~~g-~tTGISa~DRa~TIr~l 117 (210)
.+... +.++ .+. +.+..|...|-.+-+.|
T Consensus 203 frvG~-YKSA-------vEpf~r~~MS~e~re~~~~~l 232 (618)
T PRK10949 203 FRVGT-YKSA-------VEPFIRDDMSPAAREADSRWI 232 (618)
T ss_pred EEECC-CCCC-------CCCCCCCCCCHHHHHHHHHHH
T ss_conf 98137-5674-------651114459999999999999
No 60
>PRK06464 phosphoenolpyruvate synthase; Validated
Probab=36.40 E-value=36 Score=16.01 Aligned_cols=43 Identities=21% Similarity=0.177 Sum_probs=17.2
Q ss_pred CCCEEEEHHHCCHHHHHHHHHHCCCCEEE-----ECCHHHHHHHHCCCCC
Q ss_conf 70133484459999999999708994586-----1468999874036432
Q gi|254780359|r 36 EADLVLAAIHCTSEKMAFIIRHTCGIVCT-----PMPFHTAHKLKLNPMV 80 (210)
Q Consensus 36 EgDlv~~Ae~vt~e~i~fm~~~~~Glic~-----al~~~~~~~L~Lp~m~ 80 (210)
+|+ |+-.+..+|+.+.-|.+- .|++.- +-..-.++.||+|-.+
T Consensus 385 ~G~-ILV~~~TsPddv~gM~~A-~~i~t~~gg~t~h~a~~ar~~~~p~~~ 432 (794)
T PRK06464 385 PGD-VLVTDMTDPDWEPVMKRA-SAIVTNRGGRTCHAAIIARELGIPAVV 432 (794)
T ss_pred CCC-EEECCCCCHHHHHHHHHH-HEEEEECCCCCHHHHHHHHHCCCCEEE
T ss_conf 896-884687886688898874-154684598504899999871898698
No 61
>PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional
Probab=36.37 E-value=34 Score=16.15 Aligned_cols=106 Identities=15% Similarity=0.101 Sum_probs=46.0
Q ss_pred HHHHHHHHHCCCEEEEEECCCCCCC-CCEEEEHHHCCHHHHHHHHHHCCCCEEE-ECCHHHHHHHHCCCCCC--------
Q ss_conf 9999999968982999967789887-0133484459999999999708994586-14689998740364324--------
Q gi|254780359|r 12 IEDVIQSFQKGEMVIVTDADDRENE-ADLVLAAIHCTSEKMAFIIRHTCGIVCT-PMPFHTAHKLKLNPMVL-------- 81 (210)
Q Consensus 12 ie~ai~al~~G~~Viv~D~~dREnE-gDlv~~Ae~vt~e~i~fm~~~~~Glic~-al~~~~~~~L~Lp~m~~-------- 81 (210)
+-.+-..+..|--.+.+|= |.++= -|.--....+|+..-+-+.-|-.|..|= .-=.+.|++-+|+...-
T Consensus 84 ~at~~ai~~~Ga~pvf~Di-d~~t~~id~~~~e~~it~~tkaIi~Vh~~G~~~d~~~i~~i~~~~~i~vIEDaA~a~Ga~ 162 (379)
T PRK11658 84 VSTLNMIVLLGATPVMVDV-DRDTLMVTPEAIEAAITPRTKAIIPVHYAGAPADLDAIRAIGERYGIPVIEDAAHAVGTY 162 (379)
T ss_pred HHHHHHHHHCCCEEEEECC-CCCCCCCCHHHHHHHCCCCCEEEEEECCCCCCCCHHHHHHHHHHCCCEEEECCHHHHCCC
T ss_conf 9999999981998997457-456535488999865482654999856889866377999999975981897083553665
Q ss_pred CCCC---CCCCCEEEEEECCCCCCCC------CCHHHHHHHHHHHHH
Q ss_conf 4566---5665217887203477789------998899999999984
Q gi|254780359|r 82 ENES---VHKTAFTVSVDSKHGITTG------ISADDRAYTIKNLAN 119 (210)
Q Consensus 82 ~n~~---~~~taFtvsvd~~~g~tTG------ISa~DRa~TIr~la~ 119 (210)
-+.. ..+.+ +.|......++|| ..+.+-+..+|.|-+
T Consensus 163 ~~g~~~Gs~g~a-~fSF~~~K~ittGeGG~ivtnd~~l~~~~r~lr~ 208 (379)
T PRK11658 163 YKGRHIGARGTA-IFSFHAIKNITCAEGGLIVTDDEELADRLRMLKF 208 (379)
T ss_pred CCCCCCCCCCCE-EEECCCCCCCCCCCCEEEEECCHHHHHHHHHHHH
T ss_conf 479866762445-7856666678777874999699999999999997
No 62
>TIGR00389 glyS_dimeric glycyl-tRNA synthetase; InterPro: IPR002315 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology . The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric . Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices , and are mostly dimeric or multimeric, containing at least three conserved regions , , . However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases; these synthetases are further divided into three subclasses, a, b and c, according to sequence homology. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases . In eubacteria, glycyl-tRNA synthetase (6.1.1.14 from EC) is an alpha2/beta2 tetramer composed of 2 different subunits , , . In some eubacteria, in archaea and eukaryota, glycyl-tRNA synthetase is an alpha2 dimer, this family. It belongs to class IIc and is one of the most complex synthetases. What is most interesting is the lack of similarity between the two types: divergence at the sequence level is so great that it is impossible to infer descent from common genes. The alpha (see IPR002310 from INTERPRO) and beta subunits (see IPR002311 from INTERPRO) also lack significant sequence similarity. However, they are translated from a single mRNA , and a single chain glycyl-tRNA synthetase from Chlamydia trachomatis has been found to have significant similarity with both domains, suggesting divergence from a single polypeptide chain . The sequence and crystal structure of the homodimeric glycyl-tRNA synthetase from Thermus thermophilus, shows that each monomer consists of an active site strongly resembling that of the aspartyl and seryl enzymes, a C-terminal anticodon recognition domain of 100 residues and a third domain unusually inserted between motifs 1 and 2 almost certainly interacting with the acceptor arm of tRNA(Gly). The C-terminal domain has a novel five-stranded parallel-antiparallel beta-sheet structure with three surrounding helices. The active site residues most probably responsible for substrate recognition, in particular in the Gly binding pocket, can be identified by inference from aspartyl-tRNA synthetase due to the conserved nature of the class II active site , .; GO: 0000166 nucleotide binding, 0004820 glycine-tRNA ligase activity, 0005524 ATP binding, 0006412 translation, 0006426 glycyl-tRNA aminoacylation, 0005737 cytoplasm.
Probab=36.26 E-value=5.7 Score=21.03 Aligned_cols=23 Identities=35% Similarity=0.530 Sum_probs=16.2
Q ss_pred CCCCEEEEEECCCCCCCCCCHHHHHHHHHH
Q ss_conf 665217887203477789998899999999
Q gi|254780359|r 87 HKTAFTVSVDSKHGITTGISADDRAYTIKN 116 (210)
Q Consensus 87 ~~taFtvsvd~~~g~tTGISa~DRa~TIr~ 116 (210)
-||+|+||||+- ++ .|++-|||.
T Consensus 562 IGtPF~vT~Dfe-tl------ED~tVT~Re 584 (606)
T TIGR00389 562 IGTPFCVTVDFE-TL------EDETVTIRE 584 (606)
T ss_pred CCCCCEEEECCC-CC------CCCEEEEEE
T ss_conf 688715874253-11------076467730
No 63
>pfam03437 BtpA BtpA family. The BtpA protein is tightly associated with the thylakoid membranes, where it stabilizes the reaction centre proteins of photosystem I.
Probab=36.24 E-value=38 Score=15.88 Aligned_cols=159 Identities=22% Similarity=0.167 Sum_probs=69.9
Q ss_pred HHHHHH---HHHCCCE--EEEEECCCCCCCCCEEEEHHHCCHHHHHHHHHHCCCCEEEECCHHHHHHHHCCCC--CCCCC
Q ss_conf 999999---9968982--9999677898870133484459999999999708994586146899987403643--24456
Q gi|254780359|r 12 IEDVIQ---SFQKGEM--VIVTDADDRENEADLVLAAIHCTSEKMAFIIRHTCGIVCTPMPFHTAHKLKLNPM--VLENE 84 (210)
Q Consensus 12 ie~ai~---al~~G~~--Viv~D~~dREnEgDlv~~Ae~vt~e~i~fm~~~~~Glic~al~~~~~~~L~Lp~m--~~~n~ 84 (210)
++.|++ +|.+|.. ||+ ||++|+-|+ ..+.|+.++.|.+-+ .+..+.+.+|.= +..|+
T Consensus 28 ie~A~~ea~~l~~~GvDgviv------EN~~D~Py~-~~~~~etvaamt~i~---------~~v~~~~~iP~GvnvL~nd 91 (254)
T pfam03437 28 IDKAVSDAMALEEGGFDAVIL------ENYGDAPYL-KTVGPETVAAMTVIA---------GEVKSDVSIPLGINVLRND 91 (254)
T ss_pred HHHHHHHHHHHHHCCCCEEEE------ECCCCCCCC-CCCCHHHHHHHHHHH---------HHHHHHCCCCEEEEEECCC
T ss_conf 999999999999779988998------068997774-677669899999999---------9998744887367776178
Q ss_pred CC--------CCCCE------EEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHCCCCCCCEEEECCCCCCCCCCHH
Q ss_conf 65--------66521------78872034777899988999999999842013243138985001001269824667802
Q gi|254780359|r 85 SV--------HKTAF------TVSVDSKHGITTGISADDRAYTIKNLANPHSIADNFVRPGHIFPLISRDGGVLVRPGHT 150 (210)
Q Consensus 85 ~~--------~~taF------tvsvd~~~g~tTGISa~DRa~TIr~la~~~~~~~df~~PGHV~pL~a~~gGvl~R~GHT 150 (210)
.. .+..| +-+.-.-.|+-.|- +.+-.+.-+.+-. +.+----+.+=|=.||..++ -.
T Consensus 92 ~~aalaiA~a~ga~FIRv~~~~g~~~~d~G~~~~~-a~~~~r~R~~l~a-~v~i~aDV~~Kh~~~l~~~~--------~~ 161 (254)
T pfam03437 92 AVAALAIAYAVGADFIRVNVLTGVAASDQGILEGN-AGELARYRKLLPS-RIKILADVHVKHAVHLGNRD--------IE 161 (254)
T ss_pred CHHHHHHHHHHCCCEEEECCEECEEECCCCCCCCC-HHHHHHHHHHCCC-CCEEEEEECCCCCCCCCCCC--------HH
T ss_conf 58999999982997698713765333577531553-8999999997199-95899755001254579999--------89
Q ss_pred HHHHHHHHHCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHCCCEEEHH
Q ss_conf 6776998876996005988853688750598999999998389077799
Q gi|254780359|r 151 EASVDLCKITGLPPIAVICELVNDDGTIKKGKQVIEFSKKYDLKIISVQ 199 (210)
Q Consensus 151 EaavdL~~lAGl~P~~vi~Eil~~~G~~~~~~~~~~fA~~~~lp~i~i~ 199 (210)
|.+-+.++-+ +. -++| --=...|...+.+++.++.+.-.+|++-++
T Consensus 162 ~~~~~~~~~~-~a-Daii-vTG~~TG~~~~~~~l~~vk~~~~~PvlvGS 207 (254)
T pfam03437 162 SAVLDTIERG-LA-DAVI-LSGKTTGGEVDLEELKLAKETVPVPVLVGS 207 (254)
T ss_pred HHHHHHHHHC-CC-CEEE-ECCCCCCCCCCHHHHHHHHHHCCCCEEEEC
T ss_conf 9999999826-89-8999-787302799999999999962699889957
No 64
>PRK08268 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=36.16 E-value=38 Score=15.87 Aligned_cols=30 Identities=20% Similarity=0.301 Sum_probs=16.5
Q ss_pred CCHHHHHHHHHHCCCCEEEECCHHHHHHHHCC
Q ss_conf 99999999997089945861468999874036
Q gi|254780359|r 46 CTSEKMAFIIRHTCGIVCTPMPFHTAHKLKLN 77 (210)
Q Consensus 46 vt~e~i~fm~~~~~Glic~al~~~~~~~L~Lp 77 (210)
++++.|-..++.+.|+-- =|.+..|..||.
T Consensus 209 A~~e~ID~a~r~~~G~pm--GPfel~DliGlD 238 (503)
T PRK08268 209 ADFATIDAILREAAGFRM--GPFELMDLTGLD 238 (503)
T ss_pred CCHHHHHHHHHHCCCCCC--CHHHHHHHHHHH
T ss_conf 999999999996789975--888887664216
No 65
>PRK13112 consensus
Probab=36.09 E-value=6.8 Score=20.54 Aligned_cols=48 Identities=21% Similarity=0.327 Sum_probs=24.5
Q ss_pred CCCCEEEECCHHHHHHH-------HCCCC--CCCCCCC--------CCCCEEEEEECCCCCCCCCCH
Q ss_conf 89945861468999874-------03643--2445665--------665217887203477789998
Q gi|254780359|r 58 TCGIVCTPMPFHTAHKL-------KLNPM--VLENESV--------HKTAFTVSVDSKHGITTGISA 107 (210)
Q Consensus 58 ~~Glic~al~~~~~~~L-------~Lp~m--~~~n~~~--------~~taFtvsvd~~~g~tTGISa 107 (210)
..|+|+.=+|.+....+ +|++. +..+++. ....|-.-|- ..|+ ||...
T Consensus 124 vdGvIipDLP~eE~~~~~~~~~~~~i~~I~lvaPtt~~eRi~~i~~~s~GFiY~Vs-~~Gv-TG~~~ 188 (279)
T PRK13112 124 VDGLIVVDLPPEMDAELCIPAMKAGINFIRLATPTTDDKRLPKVLANTSGFVYYVS-MTGI-TGSAL 188 (279)
T ss_pred CCEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCCCEEEEE-CCCC-CCCCC
T ss_conf 98798469997888999999985783469982589989999999852788089983-5666-67664
No 66
>PRK13138 consensus
Probab=35.26 E-value=9.2 Score=19.72 Aligned_cols=21 Identities=19% Similarity=0.474 Sum_probs=11.5
Q ss_pred CCCCEEEECCHH---------HHHHHHCCC
Q ss_conf 899458614689---------998740364
Q gi|254780359|r 58 TCGIVCTPMPFH---------TAHKLKLNP 78 (210)
Q Consensus 58 ~~Glic~al~~~---------~~~~L~Lp~ 78 (210)
..|+|+.=+|.+ .|++-+|.+
T Consensus 119 vdGlIipDLP~e~~E~~~~~~~~~~~~i~~ 148 (264)
T PRK13138 119 IQGLIIPDLPFDTPEAEEFFSQLERKKIDF 148 (264)
T ss_pred CCEEECCCCCCCCHHHHHHHHHHHHCCCCE
T ss_conf 775853689865033599999999869986
No 67
>PRK05428 HPr kinase/phosphorylase; Provisional
Probab=35.22 E-value=39 Score=15.78 Aligned_cols=18 Identities=28% Similarity=0.283 Sum_probs=7.5
Q ss_pred HHHHHHHHCCCEEEHHHH
Q ss_conf 999999838907779999
Q gi|254780359|r 184 VIEFSKKYDLKIISVQDL 201 (210)
Q Consensus 184 ~~~fA~~~~lp~i~i~dl 201 (210)
+..|-+-.|+-+++|.++
T Consensus 197 ~~~~~EvRGlGIinI~~l 214 (308)
T PRK05428 197 LKHLLEIRGLGIIDVMTL 214 (308)
T ss_pred HHHHHHHCCCCEEEHHHH
T ss_conf 502455327758868775
No 68
>PRK00028 infC translation initiation factor IF-3; Reviewed
Probab=35.09 E-value=33 Score=16.24 Aligned_cols=122 Identities=19% Similarity=0.216 Sum_probs=61.6
Q ss_pred CEEEEEECCCCCCCCCEEEEHHHCCHHHHHHHHHHCCCCEEEECCHHHHHHHHCCCCCCC-C------------CCCCCC
Q ss_conf 829999677898870133484459999999999708994586146899987403643244-5------------665665
Q gi|254780359|r 23 EMVIVTDADDRENEADLVLAAIHCTSEKMAFIIRHTCGIVCTPMPFHTAHKLKLNPMVLE-N------------ESVHKT 89 (210)
Q Consensus 23 ~~Viv~D~~dREnEgDlv~~Ae~vt~e~i~fm~~~~~Glic~al~~~~~~~L~Lp~m~~~-n------------~~~~~t 89 (210)
..|.|+|++ -++-| ++ -+.+.+......+=.||+++-... ||...- + ......
T Consensus 18 ~~VrlI~~d-G~~lG--v~----~~~eAl~~A~~~~LDLV~vs~~~~-------PPVcKi~dygK~~ye~~kk~k~~kkk 83 (175)
T PRK00028 18 PEVRLIGDD-GEQLG--VV----SIREALRLAEEAGLDLVEISPNAK-------PPVCKIMDYGKFKYEQQKKAKEAKKK 83 (175)
T ss_pred CEEEEECCC-CCCCC--CE----EHHHHHHHHHHCCCCEEEECCCCC-------CCEEEEEHHHHHHHHHHHHHHHHHHC
T ss_conf 989999899-96988--46----499999999981994899878999-------98689850778999999888776521
Q ss_pred CEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHCCCCCCCEEEECCCCCCCCCCHHHHHHHHHH--HCCCCCEEE
Q ss_conf 217887203477789998899999999984201324313898500100126982466780267769988--769960059
Q gi|254780359|r 90 AFTVSVDSKHGITTGISADDRAYTIKNLANPHSIADNFVRPGHIFPLISRDGGVLVRPGHTEASVDLCK--ITGLPPIAV 167 (210)
Q Consensus 90 aFtvsvd~~~g~tTGISa~DRa~TIr~la~~~~~~~df~~PGHV~pL~a~~gGvl~R~GHTEaavdL~~--lAGl~P~~v 167 (210)
.-.+.+--. -++..|..+|-..-++.+ ..|..-||=.=+.-+--| +...|.|.+..|.. +..+...|.
T Consensus 84 q~~~~~KEi-r~~~~I~~hDl~~K~k~~-------~~FL~~G~kVki~v~~rG--Re~~~~e~g~~ll~~~~~~l~~i~~ 153 (175)
T PRK00028 84 QKVIEVKEI-KLRPKIDEHDYQVKLKNA-------RRFLEKGDKVKVTIRFRG--REIAHKELGMELLERFAEDLEDIAK 153 (175)
T ss_pred CCCCCEEEE-EEECCCCHHHHHHHHHHH-------HHHHHCCCEEEEEEEECC--CCCCCHHHHHHHHHHHHHHHHHHEE
T ss_conf 465320035-786575602999999999-------999977997999999877--5565889999999999997222458
Q ss_pred E
Q ss_conf 8
Q gi|254780359|r 168 I 168 (210)
Q Consensus 168 i 168 (210)
+
T Consensus 154 ~ 154 (175)
T PRK00028 154 V 154 (175)
T ss_pred E
T ss_conf 5
No 69
>PRK13135 consensus
Probab=35.02 E-value=7.2 Score=20.40 Aligned_cols=17 Identities=18% Similarity=0.374 Sum_probs=11.8
Q ss_pred CCCCEEEECCHHHHHHH
Q ss_conf 89945861468999874
Q gi|254780359|r 58 TCGIVCTPMPFHTAHKL 74 (210)
Q Consensus 58 ~~Glic~al~~~~~~~L 74 (210)
..|+|+.-+|.+..+.+
T Consensus 122 vdGlIipDLP~ee~~~~ 138 (267)
T PRK13135 122 VDGVLLVDLPPEEAEEF 138 (267)
T ss_pred CCEEECCCCCHHHHHHH
T ss_conf 97476378997888999
No 70
>KOG0875 consensus
Probab=34.29 E-value=38 Score=15.85 Aligned_cols=85 Identities=14% Similarity=0.169 Sum_probs=45.6
Q ss_pred HHHHHHHHHCCCEEEEEECCCCCCCCCEEEEHHHCCHHHHHHHHHHCCCCEEEECCHHHHHHHHCCCCCC----CC----
Q ss_conf 9999999968982999967789887013348445999999999970899458614689998740364324----45----
Q gi|254780359|r 12 IEDVIQSFQKGEMVIVTDADDRENEADLVLAAIHCTSEKMAFIIRHTCGIVCTPMPFHTAHKLKLNPMVL----EN---- 83 (210)
Q Consensus 12 ie~ai~al~~G~~Viv~D~~dREnEgDlv~~Ae~vt~e~i~fm~~~~~Glic~al~~~~~~~L~Lp~m~~----~n---- 83 (210)
|-+...+-.+|..|+..-.. .| |--+ -+.+---|+...||+||+ |-.....+|+|..... .+
T Consensus 61 icqi~~~~i~gd~v~~~a~s-~e----lpky--g~~~GLtNyaAay~TglL---LarR~l~~~gmD~~yeg~~e~~gde~ 130 (264)
T KOG0875 61 ICQIAYATIEGDVIVRAAYA-HE----LPKY--GVKVGLTNYAAAYCTGLL---LACRLLKRFGMDKIYEGQVEVTGDEY 130 (264)
T ss_pred HHHHHHHEECCEEEEEEECC-CC----CCCC--CCCCCCCHHHHHHHHHHH---HHHHHHHHHCCCCCCCCCEEECCCCC
T ss_conf 88877632132399972013-34----6655--555464016888766789---99999987086100125245137622
Q ss_pred ----CCCCCCCEEEEEECCC-CCCCCCC
Q ss_conf ----6656652178872034-7778999
Q gi|254780359|r 84 ----ESVHKTAFTVSVDSKH-GITTGIS 106 (210)
Q Consensus 84 ----~~~~~taFtvsvd~~~-g~tTGIS 106 (210)
.+....+|++.+|..- -+|||+.
T Consensus 131 ~~e~idgq~~aFt~~Ld~GLaRtttg~k 158 (264)
T KOG0875 131 NVESIDGQPGAFTCYLDAGLARTTTGNK 158 (264)
T ss_pred CCCCCCCCCCCEEEEECCCCCCCCCCCE
T ss_conf 2114367877747883145234677851
No 71
>PRK06111 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=34.28 E-value=41 Score=15.69 Aligned_cols=30 Identities=27% Similarity=0.283 Sum_probs=19.9
Q ss_pred CHHHHHHHHHHHCCCCCEEEEEEEECCCCC
Q ss_conf 802677699887699600598885368875
Q gi|254780359|r 148 GHTEASVDLCKITGLPPIAVICELVNDDGT 177 (210)
Q Consensus 148 GHTEaavdL~~lAGl~P~~vi~Eil~~~G~ 177 (210)
---++++.|++..|..-++.+-=|+|++++
T Consensus 254 ~~~~~A~~la~~v~Y~g~gTvEFl~d~~~~ 283 (449)
T PRK06111 254 AMGEAAVQAAKAIGYTNAGTIEFLVDNQKN 283 (449)
T ss_pred HHHHHHHHHHHHCCEEEEEEEEEEEECCCC
T ss_conf 999999999887171024689999948986
No 72
>pfam07905 PucR Purine catabolism regulatory protein-like family. The bacterial proteins found in this family are similar to the purine catabolism regulatory protein expressed by Bacillus subtilis (PucR). PucR is thought to be a transcriptional activator involved in the induction of the purine degradation pathway, and may contain a LysR-like DNA-binding domain. It is similar to LysR-type regulators in that it represses its own expression. The other members of this family are also annotated as being putative regulatory proteins.
Probab=33.91 E-value=41 Score=15.65 Aligned_cols=74 Identities=12% Similarity=0.214 Sum_probs=46.1
Q ss_pred HHHHCCCCCCCEEEECCCCCCCCCCHHHHHHHHH-HHCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHCCCEEEHHHHH
Q ss_conf 2431389850010012698246678026776998-876996005988853688750598999999998389077799999
Q gi|254780359|r 124 ADNFVRPGHIFPLISRDGGVLVRPGHTEASVDLC-KITGLPPIAVICELVNDDGTIKKGKQVIEFSKKYDLKIISVQDLI 202 (210)
Q Consensus 124 ~~df~~PGHV~pL~a~~gGvl~R~GHTEaavdL~-~lAGl~P~~vi~Eil~~~G~~~~~~~~~~fA~~~~lp~i~i~dli 202 (210)
+.+|.+||-+ .|.+ |+.-+ .+.|.-.++. +|+...-+|++..+ +..-. .=-+++.++|+++++|++.+..=+
T Consensus 36 ~~~~l~~gEl-vlTt---g~~~~-~~~~~~~~~i~~L~~~g~agL~i~~-g~~~~-~iP~~~i~~a~~~~~Pli~iP~~~ 108 (122)
T pfam07905 36 ISPWLRGGEL-LLTT---GYGLK-DDPEALREFVRELAEAGAAGLGIKT-GRYIP-EIPEELIAAANRLGLPLIELPREV 108 (122)
T ss_pred HHHHCCCCEE-EEEE---CCCCC-CCHHHHHHHHHHHHHCCCEEEEEEC-CCCCC-CCCHHHHHHHHHCCCCEEEECCCC
T ss_conf 8896369859-9972---55447-9999999999999978964999942-55546-699999999997499779945978
Q ss_pred HH
Q ss_conf 99
Q gi|254780359|r 203 AW 204 (210)
Q Consensus 203 ~y 204 (210)
.|
T Consensus 109 ~f 110 (122)
T pfam07905 109 PF 110 (122)
T ss_pred CH
T ss_conf 79
No 73
>COG0246 MtlD Mannitol-1-phosphate/altronate dehydrogenases [Carbohydrate transport and metabolism]
Probab=33.51 E-value=40 Score=15.71 Aligned_cols=46 Identities=33% Similarity=0.726 Sum_probs=31.8
Q ss_pred HHHHHCCCCCEEEE-EEEECCCCCCCCHHHHHHHHHHHCCCEEEHHHHHHHHHH
Q ss_conf 99887699600598-885368875059899999999838907779999999984
Q gi|254780359|r 155 DLCKITGLPPIAVI-CELVNDDGTIKKGKQVIEFSKKYDLKIISVQDLIAWRKK 207 (210)
Q Consensus 155 dL~~lAGl~P~~vi-~Eil~~~G~~~~~~~~~~fA~~~~lp~i~i~dli~yr~~ 207 (210)
-.=+-+|.+|..+| ||-+...|+.++ .....||..++. ++..|..+
T Consensus 157 ~~R~~~g~~p~tIisCdN~~~NG~~lk-~~Vl~~a~~~~~------~~a~wi~~ 203 (473)
T COG0246 157 RRRREAGLKPLTIISCENIPRNGEVLK-EAVLRFASEWDL------ALAAWIEE 203 (473)
T ss_pred HHHHHCCCCCEEEEECCCCCCHHHHHH-HHHHHHHHHHHH------HHHHHHHH
T ss_conf 999845899848984678742069999-999999876335------79999996
No 74
>pfam11195 DUF2829 Protein of unknown function (DUF2829). This is a uncharacterized family of proteins found in bacteria and bacteriphages.
Probab=33.16 E-value=32 Score=16.33 Aligned_cols=18 Identities=11% Similarity=0.377 Sum_probs=15.1
Q ss_pred HHHHHHHHHHCCCEEEEE
Q ss_conf 699999999689829999
Q gi|254780359|r 11 YIEDVIQSFQKGEMVIVT 28 (210)
Q Consensus 11 ~ie~ai~al~~G~~Viv~ 28 (210)
++++||.+||+|+-|.=.
T Consensus 2 ~FgeAl~aLK~Gkkv~R~ 19 (75)
T pfam11195 2 NFEEALKALKAGKKISRK 19 (75)
T ss_pred CHHHHHHHHHCCCEEEEC
T ss_conf 879999998739968862
No 75
>PRK13124 consensus
Probab=33.02 E-value=10 Score=19.43 Aligned_cols=57 Identities=14% Similarity=0.191 Sum_probs=24.6
Q ss_pred CHHHHHHHHHHHHC--CCEEEEEECCCCCCCCCEEEEHHHCCHHHHHHHHHH--CCCCEEEECCHHHHHH
Q ss_conf 95669999999968--982999967789887013348445999999999970--8994586146899987
Q gi|254780359|r 8 DERYIEDVIQSFQK--GEMVIVTDADDRENEADLVLAAIHCTSEKMAFIIRH--TCGIVCTPMPFHTAHK 73 (210)
Q Consensus 8 ~~~~ie~ai~al~~--G~~Viv~D~~dREnEgDlv~~Ae~vt~e~i~fm~~~--~~Glic~al~~~~~~~ 73 (210)
+...+-+.++.+|. ..|++++---+ .++ .-..+...-..+. ..|+|+.=||.+....
T Consensus 69 ~~~~~~~~~~~~r~~~~~pivlM~Y~N------~i~---~~G~e~F~~~~~~~Gv~GvIipDLP~eE~~~ 129 (257)
T PRK13124 69 NIVKAMELVGKMRKKVTIPIVYFTYYN------PVL---QYGLEKFFALARENGIDGLLIPDLPLEESGE 129 (257)
T ss_pred CHHHHHHHHHHHHCCCCCCEEEEEHHH------HHH---HHHHHHHHHHHHHCCCCEEECCCCCHHHHHH
T ss_conf 689999999985244788889975007------898---7579999999997599847778999799999
No 76
>COG4130 Predicted sugar epimerase [Carbohydrate transport and metabolism]
Probab=32.92 E-value=43 Score=15.55 Aligned_cols=14 Identities=29% Similarity=0.437 Sum_probs=5.5
Q ss_pred HHHHHHCCCCCCCC
Q ss_conf 99874036432445
Q gi|254780359|r 70 TAHKLKLNPMVLEN 83 (210)
Q Consensus 70 ~~~~L~Lp~m~~~n 83 (210)
.|++||+...-.+|
T Consensus 25 ~ak~lg~s~VeiRn 38 (272)
T COG4130 25 LAKRLGLSKVEIRN 38 (272)
T ss_pred HHHHCCCCEEEEEC
T ss_conf 99972863368734
No 77
>PRK10634 putative ribosome maturation factor; Provisional
Probab=32.70 E-value=43 Score=15.53 Aligned_cols=63 Identities=6% Similarity=0.123 Sum_probs=33.9
Q ss_pred CCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEEHHHCCHHHHHHHHH-----HCCCCEEEECCHHHHHH
Q ss_conf 5779566999999996898299996778988701334844599999999997-----08994586146899987
Q gi|254780359|r 5 KSLDERYIEDVIQSFQKGEMVIVTDADDRENEADLVLAAIHCTSEKMAFIIR-----HTCGIVCTPMPFHTAHK 73 (210)
Q Consensus 5 ~~~~~~~ie~ai~al~~G~~Viv~D~~dREnEgDlv~~Ae~vt~e~i~fm~~-----~~~Glic~al~~~~~~~ 73 (210)
.+...+.|++|++.|++|+.|+.=-| +-.=+.+..-..+.+..+.+ ...+++.++-+.+...+
T Consensus 3 ~n~~~~ai~~Av~~L~~GgvV~~PTd------TvYGlg~da~~~~Av~~i~~iK~R~~~kpl~~l~~~~~~l~~ 70 (190)
T PRK10634 3 NNLQGDAIAAAVDVLNEERVIAYPTE------AVFGVGCDPDSETAVMRLLELKQRPVDKGLILIAANYEQLKP 70 (190)
T ss_pred CCCCHHHHHHHHHHHHCCCEEEEECC------CHHHEEECCCCHHHHHHHHHHCCCCCCCCCEEEECCHHHHHH
T ss_conf 88578999999999976998999268------744302558999999999997589888996899799999999
No 78
>TIGR01326 OAH_OAS_sulfhy O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase; InterPro: IPR006235 This family of sequences is a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine sulfhydrylase (OAH, 2.5.1.49 from EC) and O-acetylserine sulfhydrylase (OAS, 2.5.1.47 from EC). An alternate name for OAH sulfhydrylase is homocysteine synthase.; GO: 0016765 transferase activity transferring alkyl or aryl (other than methyl) groups, 0006520 amino acid metabolic process.
Probab=32.59 E-value=43 Score=15.51 Aligned_cols=41 Identities=22% Similarity=0.179 Sum_probs=31.9
Q ss_pred HHHHCCCCCEEEEEEEE-CCCCCCCCHHHHHHHHHHH--CCCEE
Q ss_conf 98876996005988853-6887505989999999983--89077
Q gi|254780359|r 156 LCKITGLPPIAVICELV-NDDGTIKKGKQVIEFSKKY--DLKII 196 (210)
Q Consensus 156 L~~lAGl~P~~vi~Eil-~~~G~~~~~~~~~~fA~~~--~lp~i 196 (210)
|.++-.=.-=||++|=+ |+..+..+.+..-+.|++| ++|+|
T Consensus 136 ~~k~id~nTKAvf~EtIgNP~~~v~Die~~a~~Ah~~PhgvPli 179 (434)
T TIGR01326 136 LEKAIDENTKAVFAETIGNPALNVPDIEAVAEVAHAHPHGVPLI 179 (434)
T ss_pred HHHHCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCEEE
T ss_conf 99760667518984012387767678589999998678983488
No 79
>COG3089 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.48 E-value=43 Score=15.50 Aligned_cols=23 Identities=39% Similarity=0.459 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHCCCEEEEEECC
Q ss_conf 56699999999689829999677
Q gi|254780359|r 9 ERYIEDVIQSFQKGEMVIVTDAD 31 (210)
Q Consensus 9 ~~~ie~ai~al~~G~~Viv~D~~ 31 (210)
...+.++..++++|+.|||++..
T Consensus 36 ~qkv~~~r~qlq~GeaVivwsel 58 (72)
T COG3089 36 EQKVADVRRQLQSGEAVIVWSEL 58 (72)
T ss_pred HHHHHHHHHHHHCCCEEEEECCH
T ss_conf 99999999998368569996321
No 80
>cd00617 Tnase_like Tryptophanase family (Tnase). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia.
Probab=32.46 E-value=44 Score=15.50 Aligned_cols=20 Identities=20% Similarity=0.537 Sum_probs=9.2
Q ss_pred CCCCHHHHHHHHHHHCCCEE
Q ss_conf 50598999999998389077
Q gi|254780359|r 177 TIKKGKQVIEFSKKYDLKII 196 (210)
Q Consensus 177 ~~~~~~~~~~fA~~~~lp~i 196 (210)
+|++..+..++|++||+|++
T Consensus 171 Sm~Nir~v~~la~~~giplv 190 (431)
T cd00617 171 SMANLREVRELAHKYGIPVV 190 (431)
T ss_pred CHHHHHHHHHHHHHCCCCEE
T ss_conf 78999999999998099799
No 81
>pfam09363 XFP_C XFP C-terminal domain. Bacterial enzyme splits fructose-6-P and/or xylulose-5-P with the aid of inorganic phosphate into either acetyl-P and erythrose-4-P and/or acetyl-P and glyeraldehyde-3-P EC:4.1.2.9, EC:4.1.2.22.
Probab=31.47 E-value=45 Score=15.40 Aligned_cols=54 Identities=24% Similarity=0.231 Sum_probs=40.6
Q ss_pred CCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEEH--HHCCHHHHH---HHHHH
Q ss_conf 7577956699999999689829999677898870133484--459999999---99970
Q gi|254780359|r 4 KKSLDERYIEDVIQSFQKGEMVIVTDADDRENEADLVLAA--IHCTSEKMA---FIIRH 57 (210)
Q Consensus 4 ~~~~~~~~ie~ai~al~~G~~Viv~D~~dREnEgDlv~~A--e~vt~e~i~---fm~~~ 57 (210)
.+...+=++++|.....+|-.|.=+-+.|...|-|+|+++ .-.|-|.++ .++++
T Consensus 2 qp~~qwlt~eeA~~hc~~G~~iW~wAS~d~g~ePDVVlA~aGd~pT~E~LAA~~lLr~~ 60 (203)
T pfam09363 2 QPRPQWLTMEEAIAHCTKGLGIWDWASNDDGEEPDVVMACAGDVPTLETLAAVDLLREH 60 (203)
T ss_pred CCCCCCCCHHHHHHHHHCCCEEEEECCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHH
T ss_conf 98761269999999997587089743479999999999817872119999999999986
No 82
>COG2257 Uncharacterized homolog of the cytoplasmic domain of flagellar protein FhlB [Function unknown]
Probab=31.33 E-value=45 Score=15.43 Aligned_cols=37 Identities=22% Similarity=0.196 Sum_probs=29.3
Q ss_pred CCCCCCCHHHHHHHHHHHCCCEEEHHHHHHHHHHCCC
Q ss_conf 8875059899999999838907779999999984379
Q gi|254780359|r 174 DDGTIKKGKQVIEFSKKYDLKIISVQDLIAWRKKKEI 210 (210)
Q Consensus 174 ~~G~~~~~~~~~~fA~~~~lp~i~i~dli~yr~~~ei 210 (210)
..|.-.-.+...+.|++|++|+..=.+|++-..+-||
T Consensus 27 A~G~G~iAe~II~~Ake~~Vpi~edp~Lv~~L~~lel 63 (92)
T COG2257 27 ASGKGEIAEKIIEKAKEHGVPIQEDPLLVELLLKLEL 63 (92)
T ss_pred EECCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCC
T ss_conf 6264289999999999849985118899999984645
No 83
>pfam00764 Arginosuc_synth Arginosuccinate synthase. This family contains a PP-loop motif.
Probab=30.39 E-value=47 Score=15.28 Aligned_cols=16 Identities=25% Similarity=0.470 Sum_probs=9.7
Q ss_pred CHHHHHHHHHHHCCCE
Q ss_conf 9899999999838907
Q gi|254780359|r 180 KGKQVIEFSKKYDLKI 195 (210)
Q Consensus 180 ~~~~~~~fA~~~~lp~ 195 (210)
.+++..+||++||+|+
T Consensus 145 sR~~~i~ya~~~gI~v 160 (389)
T pfam00764 145 TREEEIEYAKEKGIPI 160 (389)
T ss_pred CHHHHHHHHHHCCCCC
T ss_conf 5799999999859988
No 84
>PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional
Probab=29.98 E-value=48 Score=15.24 Aligned_cols=145 Identities=14% Similarity=0.177 Sum_probs=60.5
Q ss_pred HHHHHHHHHHCCCEEEEEECCCCCCCCCEEE----EHHHCCHHHHHHHHHHCCCCEEEECC--HHHHHHHHCCCCCCCCC
Q ss_conf 6999999996898299996778988701334----84459999999999708994586146--89998740364324456
Q gi|254780359|r 11 YIEDVIQSFQKGEMVIVTDADDRENEADLVL----AAIHCTSEKMAFIIRHTCGIVCTPMP--FHTAHKLKLNPMVLENE 84 (210)
Q Consensus 11 ~ie~ai~al~~G~~Viv~D~~dREnEgDlv~----~Ae~vt~e~i~fm~~~~~Glic~al~--~~~~~~L~Lp~m~~~n~ 84 (210)
-+-.+-.-+..|--.+.+|- |.++ +.+ ....+|+..-+-|.-|--|..| -+. .+.|++-+|+.. ++..
T Consensus 81 f~at~~ai~~~Ga~pvfvDi-d~~t---~~id~~~ie~~it~ktkaIi~Vh~~G~~~-d~~~I~~iak~~~i~vI-EDaA 154 (375)
T PRK11706 81 FVSTANAFVLRGAKIVFVDI-RPDT---MNIDETLIEAAITPKTRAIVPVHYAGVAC-EMDTIMALAKKHNLFVV-EDAA 154 (375)
T ss_pred HHHHHHHHHHCCCEEEEEEE-CCCC---CCCCHHHHHHHHCCCCEEEEEECCCCCCC-CHHHHHHHHHHCCCEEE-ECCC
T ss_conf 49999999983996999971-6875---77678999987086754999967889866-78999998853790898-3440
Q ss_pred CC------------CCCCEEEEEECCCCCCCC----C--CHHHHHHHHHHHHHHHCCHHHHCCCCCCCEEEECCCCCCCC
Q ss_conf 65------------665217887203477789----9--98899999999984201324313898500100126982466
Q gi|254780359|r 85 SV------------HKTAFTVSVDSKHGITTG----I--SADDRAYTIKNLANPHSIADNFVRPGHIFPLISRDGGVLVR 146 (210)
Q Consensus 85 ~~------------~~taFtvsvd~~~g~tTG----I--Sa~DRa~TIr~la~~~~~~~df~~PGHV~pL~a~~gGvl~R 146 (210)
.. .+..-+.|..+...+||| | .+.+-+..++.+-+-......|.+ |.+..-.-..=|..-|
T Consensus 155 ~a~Gs~~~g~~~Gt~Gd~~~fSF~~~K~ittGeGG~i~tnd~~l~~~~~~lr~~G~~~~~~~~-g~~~~y~~~~~G~N~r 233 (375)
T PRK11706 155 QGVMSTYKGRALGTIGHLGCFSFHETKNYTAGEGGALLINDPALIERAEIIREKGTNRSQFFR-GQVDKYTWVDIGSSYL 233 (375)
T ss_pred CCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHCCCHHHHHC-CCCCCCEEEECCCCCC
T ss_conf 036876676445767998885898898787768749997999999999999982876157655-7876641540476467
Q ss_pred CCHHHHHHHHHHHCCC
Q ss_conf 7802677699887699
Q gi|254780359|r 147 PGHTEASVDLCKITGL 162 (210)
Q Consensus 147 ~GHTEaavdL~~lAGl 162 (210)
..--.|++-|++|-.+
T Consensus 234 ms~lqAAigl~QL~~l 249 (375)
T PRK11706 234 PSELQAAYLWAQLEAA 249 (375)
T ss_pred CCHHHHHHHHHHHHHH
T ss_conf 8889999999999988
No 85
>COG0137 ArgG Argininosuccinate synthase [Amino acid transport and metabolism]
Probab=29.95 E-value=43 Score=15.52 Aligned_cols=135 Identities=15% Similarity=0.204 Sum_probs=62.6
Q ss_pred CEEEEHHHCCHHHHHHHHHHC-CCCEEEECCHHH-HHHHHCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHH
Q ss_conf 133484459999999999708-994586146899-987403643244566566521788720347778999889999999
Q gi|254780359|r 38 DLVLAAIHCTSEKMAFIIRHT-CGIVCTPMPFHT-AHKLKLNPMVLENESVHKTAFTVSVDSKHGITTGISADDRAYTIK 115 (210)
Q Consensus 38 Dlv~~Ae~vt~e~i~fm~~~~-~Glic~al~~~~-~~~L~Lp~m~~~n~~~~~taFtvsvd~~~g~tTGISa~DRa~TIr 115 (210)
-|-|+...=|.-.|.||.... --.|+++.+-.. -+.|.--. .-.-..+..=+..+|+++.+ ++
T Consensus 8 vLAYSGGLDTSv~i~wL~e~~~~eVit~tadvGQ~eed~~~i~---eKA~~~Ga~~~~viD~reeF------------v~ 72 (403)
T COG0137 8 VLAYSGGLDTSVAIKWLKEKGGAEVIAVTADVGQPEEDLDAIR---EKALELGAEEAYVIDAREEF------------VE 72 (403)
T ss_pred EEEECCCCCHHHHHHHHHHHCCCEEEEEEEECCCCHHHHHHHH---HHHHHHCCCEEEEEECHHHH------------HH
T ss_conf 9995488239999999997659469999975899757757999---99998188528996438999------------99
Q ss_pred HHHHHHCCHHHHCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHCCCCCE-------------------------EEEEE
Q ss_conf 99842013243138985001001269824667802677699887699600-------------------------59888
Q gi|254780359|r 116 NLANPHSIADNFVRPGHIFPLISRDGGVLVRPGHTEASVDLCKITGLPPI-------------------------AVICE 170 (210)
Q Consensus 116 ~la~~~~~~~df~~PGHV~pL~a~~gGvl~R~GHTEaavdL~~lAGl~P~-------------------------~vi~E 170 (210)
..+-+..+ ..+..-|- +||... +.|+=-.+.-|+.++--|..-+ -||+.
T Consensus 73 ~yi~~~i~-ana~Yeg~-YpL~Ta----laRPLIak~lVe~A~k~Ga~avaHGcTGKGNDQvRFE~~~~al~pdlkiiAP 146 (403)
T COG0137 73 DYIFPAIK-ANALYEGV-YPLGTA----LARPLIAKKLVEAAKKEGADAVAHGCTGKGNDQVRFELAILALNPDLKIIAP 146 (403)
T ss_pred HHHHHHHH-HHCEEECC-CCCCCH----HHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEEEEHHHHCCCCEEEEE
T ss_conf 99999997-30512156-414543----4677999999999997199699746788887535432004541899679856
Q ss_pred EECCCCCCCCHHHHHHHHHHHCCCEE
Q ss_conf 53688750598999999998389077
Q gi|254780359|r 171 LVNDDGTIKKGKQVIEFSKKYDLKII 196 (210)
Q Consensus 171 il~~~G~~~~~~~~~~fA~~~~lp~i 196 (210)
.. +.++. +++..+||++||+|+-
T Consensus 147 ~R--ew~~~-R~~~i~Ya~~~gipv~ 169 (403)
T COG0137 147 WR--EWNLT-REEEIEYAEEHGIPVK 169 (403)
T ss_pred HH--HHCCC-HHHHHHHHHHCCCCCC
T ss_conf 33--41337-6999999998499766
No 86
>PRK07178 acetyl-CoA carboxylase; Validated
Probab=29.66 E-value=48 Score=15.21 Aligned_cols=24 Identities=17% Similarity=0.155 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHCCCCCEEEEEEEE
Q ss_conf 026776998876996005988853
Q gi|254780359|r 149 HTEASVDLCKITGLPPIAVICELV 172 (210)
Q Consensus 149 HTEaavdL~~lAGl~P~~vi~Eil 172 (210)
..++++.|++..|..-++.+==++
T Consensus 254 l~~~A~~la~~v~Y~gaGTvEFlv 277 (471)
T PRK07178 254 IGDLAVRAAKAVGYENAGTVEFLL 277 (471)
T ss_pred HHHHHHHHHHHCCCCEEEEEEEEE
T ss_conf 988999999964865012699998
No 87
>TIGR01743 purR_Bsub pur operon repressor; InterPro: IPR010078 This entry represents the pur operon repressor PurR of low-GC Gram-positive bacteria. This homodimeric repressor contains a large region homologous to phosphoribosyltransferases and is inhibited by 5-phosphoribosyl 1-pyrophosphate.; GO: 0003677 DNA binding, 0016564 transcription repressor activity, 0016481 negative regulation of transcription, 0045982 negative regulation of purine base metabolic process.
Probab=29.26 E-value=42 Score=15.63 Aligned_cols=67 Identities=21% Similarity=0.377 Sum_probs=40.0
Q ss_pred EECCHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHH--HHHCCHHHHCCCC
Q ss_conf 6146899987403643244566566521788720347778999889999999998--4201324313898
Q gi|254780359|r 64 TPMPFHTAHKLKLNPMVLENESVHKTAFTVSVDSKHGITTGISADDRAYTIKNLA--NPHSIADNFVRPG 131 (210)
Q Consensus 64 ~al~~~~~~~L~Lp~m~~~n~~~~~taFtvsvd~~~g~tTGISa~DRa~TIr~la--~~~~~~~df~~PG 131 (210)
+||-...|.-|+.|....+.++.=----|||||...|.. |=-=+...+.=|.|- +..-.-+||.+-|
T Consensus 140 vPLA~~~A~~LnV~lvivRkD~kvTEGStVSiNYVSGss-G~~I~~M~LarrSLk~GS~vL~vDDFmkaG 208 (269)
T TIGR01743 140 VPLAYAVAKVLNVPLVIVRKDSKVTEGSTVSINYVSGSS-GDRIQKMSLARRSLKKGSKVLIVDDFMKAG 208 (269)
T ss_pred HHHHHHHHHHCCCCEEEEECCCCEECCCEEEEEEEECCC-CHHHHHHHHHHHHHHHCCEEEEEECCCCCC
T ss_conf 238989987649617999846812105328995567687-436788888888886089089995355548
No 88
>TIGR02281 DTGA conserved hypothetical protein TIGR02281; InterPro: IPR011969 This entry consists of proteins of unknown function, typically from 180 to 230 amino acids in length. This entry describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. .
Probab=28.92 E-value=29 Score=16.63 Aligned_cols=59 Identities=15% Similarity=0.222 Sum_probs=34.7
Q ss_pred CCEEEEHHHCCHHHHHHHHHHCCCCEEEECCHHHHHHHHCCCCCCCCCCCCC------CCEEEEEECC
Q ss_conf 0133484459999999999708994586146899987403643244566566------5217887203
Q gi|254780359|r 37 ADLVLAAIHCTSEKMAFIIRHTCGIVCTPMPFHTAHKLKLNPMVLENESVHK------TAFTVSVDSK 98 (210)
Q Consensus 37 gDlv~~Ae~vt~e~i~fm~~~~~Glic~al~~~~~~~L~Lp~m~~~n~~~~~------taFtvsvd~~ 98 (210)
|+|-..+ .|+-..|.||+- .|=--|+|+++.|+||||++-....+-... .|+.|.+|..
T Consensus 10 GHF~~~~-~vNG~~v~flvD--TGAt~VaL~~~~A~r~Gl~~~~l~y~~~v~TAnG~~kAA~v~ld~v 74 (121)
T TIGR02281 10 GHFAATG-RVNGRAVDFLVD--TGATSVALNEEDARRLGLDLNRLGYTVTVSTANGQTKAARVTLDRV 74 (121)
T ss_pred CEEEEEE-EECCEEEEEEEE--CCCCEEECCHHHHHHCCCCCCCCCCCEEEECCCCCCCEEEEECCCE
T ss_conf 8389998-878949889982--5874278182588750981212687579983799533078755806
No 89
>pfam12163 HobA DNA replication regulator. This family of proteins is found exclusively in epsilon-proteobacteria. Proteins in this family are approximately 180 amino acids in length. The structure of HobA is a modified Rossmann fold consisting of a five-stranded parallel beta-sheet (beta1-5) flanked on one side by alpha-2, alpha-3 and alpha-6 helices and alpha-4 and alpha-5 on the other. The alpha-1 helix is extended away from and has minimal interaction with the globular part of the protein. Four monomers interact to form a tetrameric molecule. Four calcium atoms bind to the tetramer and these binding sites may have functional relevance. The function of HobA is to regulate DNA replication and its does this by binding to DNA-A, but the exact mechanism of how this regulation occurs is purely speculative
Probab=28.79 E-value=50 Score=15.11 Aligned_cols=28 Identities=21% Similarity=0.393 Sum_probs=22.8
Q ss_pred HHHHHHHHHHCCCEEEEEECCCCCCCCC
Q ss_conf 6999999996898299996778988701
Q gi|254780359|r 11 YIEDVIQSFQKGEMVIVTDADDRENEAD 38 (210)
Q Consensus 11 ~ie~ai~al~~G~~Viv~D~~dREnEgD 38 (210)
-+..+|+.+-+|+-+||.-|++||==++
T Consensus 32 L~a~~l~~ll~G~s~IvitD~~R~WF~~ 59 (180)
T pfam12163 32 LLASTLKHLLEGKSFIVITDEEREWFED 59 (180)
T ss_pred HHHHHHHHHHCCCEEEEEECCCHHHHHH
T ss_conf 9999999985797699996871778999
No 90
>TIGR00337 PyrG CTP synthase; InterPro: IPR004468 CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. The enzyme catalyzes the reaction L-glutamine + H2O + UTP + ATP = CTP + phosphate + ADP + L-glutamate. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found circa 500 bp 5 upstream of enolase in both beta (Nitrosomonas europaea) and gamma (Escherichia coli) subdivisions of Proteobacterium .; GO: 0003883 CTP synthase activity, 0006221 pyrimidine nucleotide biosynthetic process.
Probab=28.69 E-value=38 Score=15.85 Aligned_cols=24 Identities=8% Similarity=0.501 Sum_probs=14.9
Q ss_pred HHHHHHHHHCCCEEEHH-----HHHHHHH
Q ss_conf 99999998389077799-----9999998
Q gi|254780359|r 183 QVIEFSKKYDLKIISVQ-----DLIAWRK 206 (210)
Q Consensus 183 ~~~~fA~~~~lp~i~i~-----dli~yr~ 206 (210)
.|.+||+++++||+-|= -+|+|.|
T Consensus 393 ~Ai~yAREN~iPFLGICLGmQ~A~IEFAR 421 (571)
T TIGR00337 393 RAIKYARENNIPFLGICLGMQLAVIEFAR 421 (571)
T ss_pred HHHHHHHHCCCCEEEHHHHHHHHHHHHHH
T ss_conf 99999876369733021777888999976
No 91
>PRK13115 consensus
Probab=28.63 E-value=17 Score=18.08 Aligned_cols=11 Identities=9% Similarity=0.265 Sum_probs=5.1
Q ss_pred CCCEEEECCHH
Q ss_conf 99458614689
Q gi|254780359|r 59 CGIVCTPMPFH 69 (210)
Q Consensus 59 ~Glic~al~~~ 69 (210)
.|+|..=||.+
T Consensus 129 dGvIipDLP~e 139 (269)
T PRK13115 129 AGLITPDLIPD 139 (269)
T ss_pred CEEECCCCCHH
T ss_conf 80764789978
No 92
>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=28.56 E-value=51 Score=15.09 Aligned_cols=52 Identities=15% Similarity=0.324 Sum_probs=41.6
Q ss_pred HHHHHHHHCCH-----HHHCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHCCCCCE
Q ss_conf 99998420132-----43138985001001269824667802677699887699600
Q gi|254780359|r 114 IKNLANPHSIA-----DNFVRPGHIFPLISRDGGVLVRPGHTEASVDLCKITGLPPI 165 (210)
Q Consensus 114 Ir~la~~~~~~-----~df~~PGHV~pL~a~~gGvl~R~GHTEaavdL~~lAGl~P~ 165 (210)
|..+++....| -.|-.|-|+.||+---.|-...+-..+.+.++++-.|..|+
T Consensus 120 is~la~~~~~p~R~ig~HFfnP~~~m~lVEVv~g~~Ts~e~~~~~~~~~~~~GK~pV 176 (311)
T PRK08269 120 VTDLQRHVAHPARFLNAHWLNPAYLMPLVEVSPSDATDPAVVDRLAALLERIGKVPV 176 (311)
T ss_pred HHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEE
T ss_conf 999997469813089962477646685011078999999999999999997398069
No 93
>TIGR01235 pyruv_carbox pyruvate carboxylase; InterPro: IPR005930 In the postabsorptive state, blood glucose concentration is kept constant by a combination of glycogenolysis and gluconeogenesis. During prolonged fasting, when hepatic glycogen is exhausted, gluconeogenesis becomes the only source of plasma glucose. Gluconeogenesis (the production of new glucose molecules) occurs mainly in liver and, to a small extent, in kidneys. Pyruvate carboxylase (6.4.1.1 from EC), a member of the biotin-dependent enzyme family, catalyses the ATP-dependent carboxylation of pyruvate to oxaloacetate, thus playing a crucial role in gluconeogenesis. ATP + pyruvate + HCO3- = ADP + phosphate + oxaloacetate Most well characterised forms of active enzyme consist of four identical subunits arranged in a tetrahedron-like structure. Each subunit contains three functional domains: the biotin carboxylation domain, the transcarboxylation domain and the biotin carboxyl carrier domain.; GO: 0004736 pyruvate carboxylase activity, 0006094 gluconeogenesis, 0005737 cytoplasm.
Probab=28.44 E-value=47 Score=15.28 Aligned_cols=66 Identities=26% Similarity=0.420 Sum_probs=39.4
Q ss_pred HHHHCCCCCCCEEEE----------------CCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEEEE-CCCCCCCCHHHHHH
Q ss_conf 243138985001001----------------2698246678026776998876996005988853-68875059899999
Q gi|254780359|r 124 ADNFVRPGHIFPLIS----------------RDGGVLVRPGHTEASVDLCKITGLPPIAVICELV-NDDGTIKKGKQVIE 186 (210)
Q Consensus 124 ~~df~~PGHV~pL~a----------------~~gGvl~R~GHTEaavdL~~lAGl~P~~vi~Eil-~~~G~~~~~~~~~~ 186 (210)
.-||+.||-=|+--. =+.-++..-|-==+|=.+|.-||.| ++ .-||-.-..+++.+
T Consensus 78 ~vDaiHPGYGfLSE~~~Fa~~v~~aGi~FIGP~a~~~~~~GdKV~AR~~A~~aGvP-------vvPgt~Gp~~t~eev~~ 150 (1169)
T TIGR01235 78 KVDAIHPGYGFLSENSEFADAVVKAGIVFIGPKAEVLDQLGDKVAARNLAIKAGVP-------VVPGTDGPVETLEEVLD 150 (1169)
T ss_pred CCCEEECCCCCCCCCHHHHHHHHHCCCEEECCCHHHHHHHCCHHHHHHHHHHCCCC-------EECCCCCCHHHHHHHHH
T ss_conf 89777088562248878999998689567379747775405768999888877887-------63688687525999999
Q ss_pred HHHHHCCCEE
Q ss_conf 9998389077
Q gi|254780359|r 187 FSKKYDLKII 196 (210)
Q Consensus 187 fA~~~~lp~i 196 (210)
|+++||+|+|
T Consensus 151 f~~~~GYPvi 160 (1169)
T TIGR01235 151 FAKAIGYPVI 160 (1169)
T ss_pred HHHHCCCCEE
T ss_conf 9975699589
No 94
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=28.38 E-value=51 Score=15.07 Aligned_cols=48 Identities=13% Similarity=0.295 Sum_probs=34.3
Q ss_pred CCCCHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHCCCEEEHHH
Q ss_conf 66780267769988769960059888536887505989999999983890777999
Q gi|254780359|r 145 VRPGHTEASVDLCKITGLPPIAVICELVNDDGTIKKGKQVIEFSKKYDLKIISVQD 200 (210)
Q Consensus 145 ~R~GHTEaavdL~~lAGl~P~~vi~Eil~~~G~~~~~~~~~~fA~~~~lp~i~i~d 200 (210)
..-|.||-.++.++.|.-.-+-++|= ...| .+.++|++|++|++.+..
T Consensus 51 S~SGnTeEtl~~~~~a~~~ga~vi~i--tsGG------~L~~~a~~~~~p~v~iP~ 98 (119)
T cd05017 51 SYSGNTEETLSAVEQAKERGAKIVAI--TSGG------KLLEMAREHGVPVIIIPK 98 (119)
T ss_pred CCCCCCHHHHHHHHHHHHCCCEEEEE--CCCC------HHHHHHHHCCCCEEECCC
T ss_conf 28979689999999999859909998--4995------599999887999898799
No 95
>TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein; InterPro: IPR010969 This entry describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulphurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N terminus. The function of members of this family are unknown..
Probab=28.20 E-value=51 Score=15.05 Aligned_cols=60 Identities=18% Similarity=0.289 Sum_probs=49.8
Q ss_pred HHHHHHHHHHCCCEEEEEECCCCCCCCCEE-EEHHHCCHHHHHHHHHHCCCCEE------EECCHHH
Q ss_conf 699999999689829999677898870133-48445999999999970899458------6146899
Q gi|254780359|r 11 YIEDVIQSFQKGEMVIVTDADDRENEADLV-LAAIHCTSEKMAFIIRHTCGIVC------TPMPFHT 70 (210)
Q Consensus 11 ~ie~ai~al~~G~~Viv~D~~dREnEgDlv-~~Ae~vt~e~i~fm~~~~~Glic------~al~~~~ 70 (210)
--++.++-||+.++|=||-+.|-++.+-+| |--+-++++.|++...+.-+++| .||..+.
T Consensus 286 l~~~l~~~L~~~~~V~iyG~~d~~~~~~vvSf~~~g~d~~~va~~L~~~~~I~~RtGlHCAPLAH~~ 352 (384)
T TIGR01977 286 LTEKLLNGLKEIKKVKIYGPKDPAKRVGVVSFTVEGIDSEEVADILDEKFDIAVRTGLHCAPLAHKT 352 (384)
T ss_pred HHHHHHHHCCCCCCEEEECCCCHHHCCCEEEEEECCCCHHHHHHHHHHCCCCEEECCCCCCHHHHHH
T ss_conf 9999987401678067627703433267589983488877899999861891897676664123035
No 96
>pfam11116 DUF2624 Protein of unknown function (DUF2624). This family is conserved in the Bacillaceae family. Several members are named as YqfT. The function is not known.
Probab=27.80 E-value=42 Score=15.58 Aligned_cols=38 Identities=16% Similarity=0.372 Sum_probs=25.2
Q ss_pred EECCCCCCCCHHHHHHHHHHHCCCEEEH--HHHHHHHHHC
Q ss_conf 5368875059899999999838907779--9999999843
Q gi|254780359|r 171 LVNDDGTIKKGKQVIEFSKKYDLKIISV--QDLIAWRKKK 208 (210)
Q Consensus 171 il~~~G~~~~~~~~~~fA~~~~lp~i~i--~dli~yr~~~ 208 (210)
|++..-+.+..+|+.+||++||+|+..- ++|+.|.+-+
T Consensus 7 iVnqKln~iT~~ELlkYakqy~i~iT~~QA~~I~~~lrgk 46 (84)
T pfam11116 7 IVNQKLNQITADELLKYAKQYGIPITRAQAKQIAKLLRGK 46 (84)
T ss_pred HHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHCC
T ss_conf 9999983388999999999918887889999999998526
No 97
>cd07986 LPLAT_ACT14924-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: Unknown ACT14924. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are uncharacterized phospholipid/glycerol acyltransferases such as the Pectobacterium carotovorum subsp. carotovorum PC1 locus ACT14924 putative acyltransferase, and similar proteins.
Probab=27.28 E-value=53 Score=14.95 Aligned_cols=27 Identities=22% Similarity=0.224 Sum_probs=16.1
Q ss_pred CCCCCCCHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 8246678026776998876996005988
Q gi|254780359|r 142 GVLVRPGHTEASVDLCKITGLPPIAVIC 169 (210)
Q Consensus 142 Gvl~R~GHTEaavdL~~lAGl~P~~vi~ 169 (210)
++.++++++ .++-|++-+|.+=+-|..
T Consensus 118 ~~~d~~wk~-g~~~lA~k~~~pIvPV~i 144 (210)
T cd07986 118 RVSDRPWNP-FVARLARKAKAPVVPVYF 144 (210)
T ss_pred CCCCCCCCH-HHHHHHHHCCCCEEEEEE
T ss_conf 643566413-899999985998898998
No 98
>pfam04800 ETC_C1_NDUFA4 ETC complex I subunit conserved region. Family of pankaryotic NADH-ubiquinone oxidoreductase subunits (EC:1.6.5.3) (EC:1.6.99.3) from complex I of the electron transport chain initially identified in Neurospora crassa as a 21 kDa protein.
Probab=27.05 E-value=53 Score=14.99 Aligned_cols=20 Identities=10% Similarity=0.157 Sum_probs=14.4
Q ss_pred CHHHHHHHHHHHCCCEEEHH
Q ss_conf 98999999998389077799
Q gi|254780359|r 180 KGKQVIEFSKKYDLKIISVQ 199 (210)
Q Consensus 180 ~~~~~~~fA~~~~lp~i~i~ 199 (210)
..+++..||++||+.+.-++
T Consensus 57 skE~Ai~YA~k~gi~y~V~e 76 (101)
T pfam04800 57 TKEAAIAFAERQGWEYDVEE 76 (101)
T ss_pred CHHHHHHHHHHCCCEEEEEC
T ss_conf 99999999998498289957
No 99
>KOG0091 consensus
Probab=26.71 E-value=55 Score=14.88 Aligned_cols=80 Identities=14% Similarity=0.204 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHHHCCHHHHCCCCCCCEEEECCCCCCCC--CCHHHHHHHHHHHCCCCCEEEEEEEECCCCCCC-----C
Q ss_conf 899999999984201324313898500100126982466--780267769988769960059888536887505-----9
Q gi|254780359|r 108 DDRAYTIKNLANPHSIADNFVRPGHIFPLISRDGGVLVR--PGHTEASVDLCKITGLPPIAVICELVNDDGTIK-----K 180 (210)
Q Consensus 108 ~DRa~TIr~la~~~~~~~df~~PGHV~pL~a~~gGvl~R--~GHTEaavdL~~lAGl~P~~vi~Eil~~~G~~~-----~ 180 (210)
++|.+.|..---.|+.+ |+.+ -. ...| --|.|.=+.=+.|+=-.|.-++--++...-++. .
T Consensus 68 qerfrsitksyyrnsvg--------vllv-yd---itnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt 135 (213)
T KOG0091 68 QERFRSITKSYYRNSVG--------VLLV-YD---ITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVT 135 (213)
T ss_pred HHHHHHHHHHHHHCCCC--------EEEE-EE---CCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHCCCC
T ss_conf 68888878998654641--------6999-96---354466777899999999853899705999852431012211113
Q ss_pred HHHHHHHHHHHCCCEEEHH
Q ss_conf 8999999998389077799
Q gi|254780359|r 181 GKQVIEFSKKYDLKIISVQ 199 (210)
Q Consensus 181 ~~~~~~fA~~~~lp~i~i~ 199 (210)
.+|+++||+.|++.+|.-+
T Consensus 136 ~EEaEklAa~hgM~FVETS 154 (213)
T KOG0091 136 AEEAEKLAASHGMAFVETS 154 (213)
T ss_pred HHHHHHHHHHCCCEEEEEC
T ss_conf 9999999996594589831
No 100
>PRK13123 consensus
Probab=26.51 E-value=17 Score=18.10 Aligned_cols=21 Identities=10% Similarity=0.381 Sum_probs=13.6
Q ss_pred CCCCEEEECCHHHH-------HHHHCCC
Q ss_conf 89945861468999-------8740364
Q gi|254780359|r 58 TCGIVCTPMPFHTA-------HKLKLNP 78 (210)
Q Consensus 58 ~~Glic~al~~~~~-------~~L~Lp~ 78 (210)
..|+|+.=||.+.. ++.+|.+
T Consensus 118 vdGvIipDLP~eE~~~~~~~~~~~gi~~ 145 (256)
T PRK13123 118 VKGLIIPDLPYEHQDFIAPLLRDTDIAL 145 (256)
T ss_pred CCEEECCCCCHHHHHHHHHHHHHCCCCE
T ss_conf 9789737999678999999999769977
No 101
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit; InterPro: IPR005969 Synonym: dark protochlorophyllide reductase Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. The light-independent (dark) form of protochlorophyllide reductase plays a key role in the ability of gymnosperms, algae, and photosynthetic bacteria to form chlorophyll in the dark. Genetic and sequence analyses have indicated that dark protochlorophyllide reductase consists of three protein subunits that exhibit significant sequence similarity to the three subunits of nitrogenase, which catalyzes the reductive formation of ammonia from dinitrogen. Dark protochlorophyllide reductase activity was shown to be dependent on the presence of all three subunits, ATP, and the reductant dithionite .; GO: 0016730 oxidoreductase activity acting on iron-sulfur proteins as donors, 0015995 chlorophyll biosynthetic process, 0019685 photosynthesis dark reaction.
Probab=26.48 E-value=45 Score=15.38 Aligned_cols=21 Identities=10% Similarity=0.376 Sum_probs=17.5
Q ss_pred HHHHHHHHHHCCCEEEHHHHH
Q ss_conf 999999998389077799999
Q gi|254780359|r 182 KQVIEFSKKYDLKIISVQDLI 202 (210)
Q Consensus 182 ~~~~~fA~~~~lp~i~i~dli 202 (210)
.-.++||++||.++|+++=|-
T Consensus 535 ~NTE~fArE~G~~~iTlEviy 555 (562)
T TIGR01278 535 RNTEKFARERGYSVITLEVIY 555 (562)
T ss_pred HHHHHHHHHCCCCEEHHHHHH
T ss_conf 016889986398355278999
No 102
>pfam00282 Pyridoxal_deC Pyridoxal-dependent decarboxylase conserved domain.
Probab=25.77 E-value=57 Score=14.78 Aligned_cols=50 Identities=26% Similarity=0.337 Sum_probs=38.8
Q ss_pred CCCHHHHHHHHHHHCCCCCEEEEEEEE-CCCCCCCCHHHHHHHHHHHCCCE
Q ss_conf 678026776998876996005988853-68875059899999999838907
Q gi|254780359|r 146 RPGHTEASVDLCKITGLPPIAVICELV-NDDGTIKKGKQVIEFSKKYDLKI 195 (210)
Q Consensus 146 R~GHTEaavdL~~lAGl~P~~vi~Eil-~~~G~~~~~~~~~~fA~~~~lp~ 195 (210)
+.-.-|.+++-++-.|+.|.+|++-.= ...|..=+.+++.+++++|++.+
T Consensus 176 ~~~~L~~~i~~~~~~g~~p~~VvataGTT~tGaiD~l~~i~~i~~~~~lWl 226 (370)
T pfam00282 176 RGMDLEKAIEEDKENGLIPFFVCATLGTTGSGAFDPLQELGDICNKYDLWL 226 (370)
T ss_pred CHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHCCCEE
T ss_conf 999999999999867997449998637717713478999999999839808
No 103
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=25.72 E-value=57 Score=14.77 Aligned_cols=66 Identities=12% Similarity=0.114 Sum_probs=32.3
Q ss_pred EECCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHCC---CEEEHHHHHHHHHHCC
Q ss_conf 012698246678026776998876996005988853688750598999999998389---0777999999998437
Q gi|254780359|r 137 ISRDGGVLVRPGHTEASVDLCKITGLPPIAVICELVNDDGTIKKGKQVIEFSKKYDL---KIISVQDLIAWRKKKE 209 (210)
Q Consensus 137 ~a~~gGvl~R~GHTEaavdL~~lAGl~P~~vi~Eil~~~G~~~~~~~~~~fA~~~~l---p~i~i~dli~yr~~~e 209 (210)
+..-|-+..+.|+-.+-=++.++...+++-. -++. +|. ..+++++.. .++ ..++-+|+.+|.+...
T Consensus 200 i~~vGrl~~~Kg~~~ll~a~~~l~~~~~~~l--~ivG-~G~--~~~~l~~~~--~~v~f~G~~~~~el~~~~~~ad 268 (364)
T cd03814 200 LLYVGRLAPEKNLEALLDADLPLRRRPPVRL--VIVG-DGP--ARARLEARY--PNVHFLGFLDGEELAAAYASAD 268 (364)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHCCCCEEE--EEEC-CCC--CHHHHHHCC--CCEEEECCCCHHHHHHHHHHCC
T ss_conf 9996457555789999999997300588599--9984-763--399998518--9879907899899999998247
No 104
>COG4815 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.37 E-value=43 Score=15.55 Aligned_cols=31 Identities=13% Similarity=0.191 Sum_probs=15.6
Q ss_pred HHHCCCEEEEEECCCCCCCCCEEEEHHHCCHHHH
Q ss_conf 9968982999967789887013348445999999
Q gi|254780359|r 18 SFQKGEMVIVTDADDRENEADLVLAAIHCTSEKM 51 (210)
Q Consensus 18 al~~G~~Viv~D~~dREnEgDlv~~Ae~vt~e~i 51 (210)
++..|-.|+|.|++. -|-+.||++..-..-|
T Consensus 74 ~~a~~LlI~V~de~~---~G~F~Fpre~L~ekGI 104 (145)
T COG4815 74 GMAAGLLIFVIDEVL---RGVFRFPREHLAEKGI 104 (145)
T ss_pred CCCCEEEEEEECCCC---CEEEECCHHHHHHHCE
T ss_conf 003705999981652---3168714889877280
No 105
>KOG0098 consensus
Probab=24.96 E-value=56 Score=14.82 Aligned_cols=55 Identities=13% Similarity=0.023 Sum_probs=29.4
Q ss_pred CCCCHHHHHHHHHHHCCC-CCEEEEEEEECC----CCCCCCHHHHHHHHHHHCCCEEEHH
Q ss_conf 667802677699887699-600598885368----8750598999999998389077799
Q gi|254780359|r 145 VRPGHTEASVDLCKITGL-PPIAVICELVND----DGTIKKGKQVIEFSKKYDLKIISVQ 199 (210)
Q Consensus 145 ~R~GHTEaavdL~~lAGl-~P~~vi~Eil~~----~G~~~~~~~~~~fA~~~~lp~i~i~ 199 (210)
.|.-.--++--|..+--. .|-.+|.-+=|. .-.--+.+|-++||++|+|++...+
T Consensus 90 ~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~rR~Vs~EEGeaFA~ehgLifmETS 149 (216)
T KOG0098 90 RRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEARREVSKEEGEAFAREHGLIFMETS 149 (216)
T ss_pred CHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHCCCCCCHHHHHHHHHHCCCEEEHHH
T ss_conf 066677899999999972678838999744144210234658889999997395444124
No 106
>PRK13237 tyrosine phenol-lyase; Provisional
Probab=24.70 E-value=59 Score=14.65 Aligned_cols=20 Identities=20% Similarity=0.365 Sum_probs=10.0
Q ss_pred CCCCHHHHHHHHHHHCCCEE
Q ss_conf 50598999999998389077
Q gi|254780359|r 177 TIKKGKQVIEFSKKYDLKII 196 (210)
Q Consensus 177 ~~~~~~~~~~fA~~~~lp~i 196 (210)
+|++..+..++|++|++|++
T Consensus 196 Sm~Nir~v~~la~~~gipl~ 215 (459)
T PRK13237 196 SMANMRAVRELCDKHGIKVF 215 (459)
T ss_pred CHHHHHHHHHHHHHCCCCEE
T ss_conf 68999999999998099699
No 107
>PRK13238 tnaA tryptophanase; Provisional
Probab=24.68 E-value=60 Score=14.65 Aligned_cols=20 Identities=25% Similarity=0.561 Sum_probs=9.4
Q ss_pred CCCCHHHHHHHHHHHCCCEE
Q ss_conf 50598999999998389077
Q gi|254780359|r 177 TIKKGKQVIEFSKKYDLKII 196 (210)
Q Consensus 177 ~~~~~~~~~~fA~~~~lp~i 196 (210)
+|++..+..++|++|++|++
T Consensus 196 Sm~Nir~v~~la~~~~ip~~ 215 (461)
T PRK13238 196 SMANLRAVYEIAKKYGIPVV 215 (461)
T ss_pred CHHHHHHHHHHHHHCCCCEE
T ss_conf 68999999999998299599
No 108
>pfam05225 HTH_psq helix-turn-helix, Psq domain. This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster. In pipsqueak this domain binds to GAGA sequence.
Probab=24.41 E-value=57 Score=14.77 Aligned_cols=15 Identities=13% Similarity=0.503 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHCCC
Q ss_conf 566999999996898
Q gi|254780359|r 9 ERYIEDVIQSFQKGE 23 (210)
Q Consensus 9 ~~~ie~ai~al~~G~ 23 (210)
+..+++||+++++|+
T Consensus 2 ee~l~~Al~av~~g~ 16 (45)
T pfam05225 2 EEDLAEALEAVRNGK 16 (45)
T ss_pred HHHHHHHHHHHHCCC
T ss_conf 789999999999199
No 109
>KOG1706 consensus
Probab=24.37 E-value=43 Score=15.53 Aligned_cols=37 Identities=16% Similarity=0.308 Sum_probs=25.1
Q ss_pred HHHHHH-HHHHCCCEEEEEECCCCCCCCCEEEEHHHCC
Q ss_conf 699999-9996898299996778988701334844599
Q gi|254780359|r 11 YIEDVI-QSFQKGEMVIVTDADDRENEADLVLAAIHCT 47 (210)
Q Consensus 11 ~ie~ai-~al~~G~~Viv~D~~dREnEgDlv~~Ae~vt 47 (210)
..|+|- +|+|.|---+++.|..||---|+++||-...
T Consensus 44 dfe~ar~kAlk~Gakk~~~ed~~~eFvedfi~Pa~qs~ 81 (412)
T KOG1706 44 DFEEARKKALKSGAKKVVVEDVREEFVEDFIWPALQSS 81 (412)
T ss_pred HHHHHHHHHHHCCCEEEEEHHHHHHHHHHCCHHHHHHC
T ss_conf 68999975331276079861315888760201644311
No 110
>PRK13139 consensus
Probab=24.11 E-value=19 Score=17.80 Aligned_cols=14 Identities=21% Similarity=0.441 Sum_probs=9.5
Q ss_pred CCCCEEEECCHHHH
Q ss_conf 89945861468999
Q gi|254780359|r 58 TCGIVCTPMPFHTA 71 (210)
Q Consensus 58 ~~Glic~al~~~~~ 71 (210)
..|+|+.=||.+..
T Consensus 121 v~GvIipDLP~eE~ 134 (254)
T PRK13139 121 VKGLIVPDLPPEQA 134 (254)
T ss_pred CCEEECCCCCHHHH
T ss_conf 98586479997889
No 111
>PRK13134 consensus
Probab=23.75 E-value=18 Score=17.95 Aligned_cols=13 Identities=15% Similarity=0.516 Sum_probs=6.8
Q ss_pred CCCCEEEECCHHH
Q ss_conf 8994586146899
Q gi|254780359|r 58 TCGIVCTPMPFHT 70 (210)
Q Consensus 58 ~~Glic~al~~~~ 70 (210)
..|+|..=+|.+.
T Consensus 124 vdGvIipDLP~eE 136 (257)
T PRK13134 124 VAGCIIPDLPLDE 136 (257)
T ss_pred CCEEEECCCCHHH
T ss_conf 8759946999778
No 112
>smart00685 DM14 Repeats in fly CG4713, worm Y37H9A.3 and human FLJ20241.
Probab=23.73 E-value=44 Score=15.45 Aligned_cols=18 Identities=22% Similarity=0.388 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHCCCEEEE
Q ss_conf 669999999968982999
Q gi|254780359|r 10 RYIEDVIQSFQKGEMVIV 27 (210)
Q Consensus 10 ~~ie~ai~al~~G~~Viv 27 (210)
..++.+|++.++|++|=+
T Consensus 35 K~~d~~I~a~~~G~~Vd~ 52 (59)
T smart00685 35 KQFDDAIKAARAGRPVDL 52 (59)
T ss_pred HHHHHHHHHHHCCCCCCH
T ss_conf 219999999987999995
No 113
>COG1926 Predicted phosphoribosyltransferases [General function prediction only]
Probab=23.65 E-value=62 Score=14.53 Aligned_cols=140 Identities=19% Similarity=0.197 Sum_probs=66.3
Q ss_pred ECCHHHHHHHHCCCCC---CCCCCC--CCCCEE-------EEEECCCCCCCCCCHHH-HHHHHHHHHHHHCCHHHHCCCC
Q ss_conf 1468999874036432---445665--665217-------88720347778999889-9999999984201324313898
Q gi|254780359|r 65 PMPFHTAHKLKLNPMV---LENESV--HKTAFT-------VSVDSKHGITTGISADD-RAYTIKNLANPHSIADNFVRPG 131 (210)
Q Consensus 65 al~~~~~~~L~Lp~m~---~~n~~~--~~taFt-------vsvd~~~g~tTGISa~D-Ra~TIr~la~~~~~~~df~~PG 131 (210)
++-.+.++.||.|+=+ ..-.-+ .+-+|. +..|..--...+|+... ++..-+....-...-.-++..-
T Consensus 38 pva~evA~~lga~ldvliVrKiG~P~n~E~aiGAvae~g~~v~n~~~~~~~~i~~~~i~~~~~~e~~El~rrr~~yr~~~ 117 (220)
T COG1926 38 PVAFEVAQALGAPLDVLIVRKIGAPGNPELAIGAVAEGGDVVLNYDVVRSLGIDDAYIEAAAARERKELLRRREAYRGGR 117 (220)
T ss_pred HHHHHHHHHHCCCEEEEEEEECCCCCCCHHCEEEECCCCCEECCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 67999999869973699996348999822303665269967510666663468999999999999999999999972889
Q ss_pred CCCEEEECC-----CCCCCCCCHH-HHHHHHHHHCCCCCEEEEEEEECCCCC-C--------------CCHHHHHHHHHH
Q ss_conf 500100126-----9824667802-677699887699600598885368875-0--------------598999999998
Q gi|254780359|r 132 HIFPLISRD-----GGVLVRPGHT-EASVDLCKITGLPPIAVICELVNDDGT-I--------------KKGKQVIEFSKK 190 (210)
Q Consensus 132 HV~pL~a~~-----gGvl~R~GHT-EaavdL~~lAGl~P~~vi~Eil~~~G~-~--------------~~~~~~~~fA~~ 190 (210)
-++.+..+. .|+ -.|-| -|++-.+|..+-....+-..+..++-- . ........|=
T Consensus 118 ~~~~~~g~~VIlVDDGi--ATGatm~aAi~~~r~~~~~~IviAVPV~p~~a~~~l~s~~D~vvc~~~P~~F~AVg~~Y-- 193 (220)
T COG1926 118 PVPSLKGRTVILVDDGI--ATGATMKAAVRALRAKGPKEIVIAVPVAPEDAAAELESEADEVVCLYMPAPFEAVGEFY-- 193 (220)
T ss_pred CCCCCCCCEEEEEECCC--CHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHCCEEEEECCCCCHHHHHHHH--
T ss_conf 98788889899970772--12077999999998628860899844597899999985467599982785489999999--
Q ss_pred HCCCEEEHHHHHHHHHHC
Q ss_conf 389077799999999843
Q gi|254780359|r 191 YDLKIISVQDLIAWRKKK 208 (210)
Q Consensus 191 ~~lp~i~i~dli~yr~~~ 208 (210)
.+++-+|-+|+++|..+.
T Consensus 194 ~dF~q~sdeEV~~lL~~a 211 (220)
T COG1926 194 RDFRQVSDEEVRALLRRA 211 (220)
T ss_pred HHHHHCCHHHHHHHHHHC
T ss_conf 777653899999999851
No 114
>pfam00145 DNA_methylase C-5 cytosine-specific DNA methylase.
Probab=23.51 E-value=20 Score=17.65 Aligned_cols=26 Identities=27% Similarity=0.452 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHCCHHHHCCCCC
Q ss_conf 88999999999842013243138985
Q gi|254780359|r 107 ADDRAYTIKNLANPHSIADNFVRPGH 132 (210)
Q Consensus 107 a~DRa~TIr~la~~~~~~~df~~PGH 132 (210)
...|..|+|++|.-.++|++|.-||-
T Consensus 268 ~~~R~lT~rE~aRLQgFPd~f~f~g~ 293 (319)
T pfam00145 268 KNIRRLTPRECARLQGFPDDFIFPGS 293 (319)
T ss_pred CCCCCCCHHHHHHHCCCCCCCEECCC
T ss_conf 99978889999998879999686989
No 115
>PRK05370 argininosuccinate synthase; Validated
Probab=23.51 E-value=63 Score=14.51 Aligned_cols=145 Identities=12% Similarity=0.098 Sum_probs=74.4
Q ss_pred HHHHHHHCCCEEEEEECCCCCCCCCEEEEHHHCCHHHHHHHHHHCCCCEEEECCH------------HHHHHHHCCCCCC
Q ss_conf 9999996898299996778988701334844599999999997089945861468------------9998740364324
Q gi|254780359|r 14 DVIQSFQKGEMVIVTDADDRENEADLVLAAIHCTSEKMAFIIRHTCGIVCTPMPF------------HTAHKLKLNPMVL 81 (210)
Q Consensus 14 ~ai~al~~G~~Viv~D~~dREnEgDlv~~Ae~vt~e~i~fm~~~~~Glic~al~~------------~~~~~L~Lp~m~~ 81 (210)
.+++.+..||-|+| .|+...=|.-.+.||...+.-.+|++.+- +++.++|-..
T Consensus 3 ~~~~~~~~gkKVvL------------AYSGGLDTSv~l~wL~e~g~eVia~taDvGQ~de~d~~~i~~kA~~~GA~k--- 67 (447)
T PRK05370 3 TILKHLPVGQRVGI------------AFSGGLDTSAALLWMRQKGAVPYAYTANLGQPDEDDYDAIPRRAMEYGAEN--- 67 (447)
T ss_pred HHHHCCCCCCEEEE------------EECCCCHHHHHHHHHHHCCCEEEEEEEECCCCCCHHHHHHHHHHHHHCCCE---
T ss_conf 35305878888999------------958982799999999875987999999799986133899999999829978---
Q ss_pred CCCCCCCCCEEEEEECCCCC---------------------CCCCCHHHHHHHHHHHHHHHCC-HHHHCCCCCCCEEEEC
Q ss_conf 45665665217887203477---------------------7899988999999999842013-2431389850010012
Q gi|254780359|r 82 ENESVHKTAFTVSVDSKHGI---------------------TTGISADDRAYTIKNLANPHSI-ADNFVRPGHIFPLISR 139 (210)
Q Consensus 82 ~n~~~~~taFtvsvd~~~g~---------------------tTGISa~DRa~TIr~la~~~~~-~~df~~PGHV~pL~a~ 139 (210)
.+.+|.++-+ +-.-++-.|..+.+.++..... ..++..-| .
T Consensus 68 ----------~~v~D~reefv~~~i~ai~a~A~y~~~~g~~Y~l~t~laRplia~~lv~~a~~~ga~~iaHG-------a 130 (447)
T PRK05370 68 ----------ARLIDCRAQLVAEGIAAIQCGAFHISTGGVTYFNTTPLGRAVTGTMLVAAMKEDGVNIWGDG-------S 130 (447)
T ss_pred ----------EEEECCHHHHHHHHHHHHHHCCHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEC-------C
T ss_conf ----------99971799999999999973623330257644587730788999999999998399899557-------7
Q ss_pred CCCCCCCCCHHHHHHHHHHHCCCCCEEEEEEEECCC--CCCCCHHHHHHHHHHHCCCE
Q ss_conf 698246678026776998876996005988853688--75059899999999838907
Q gi|254780359|r 140 DGGVLVRPGHTEASVDLCKITGLPPIAVICELVNDD--GTIKKGKQVIEFSKKYDLKI 195 (210)
Q Consensus 140 ~gGvl~R~GHTEaavdL~~lAGl~P~~vi~Eil~~~--G~~~~~~~~~~fA~~~~lp~ 195 (210)
...|----=-++.-.+--+..-||....+.+ .+.-++++..+||++||+|+
T Consensus 131 -----TGKGNDQVRFe~~~~~l~P~lkIiaPwRd~~f~~el~sR~e~i~Ya~~~gIpv 183 (447)
T PRK05370 131 -----TYKGNDIERFYRYGLLTNPELKIYKPWLDQDFIDELGGRAEMSEFMIACGFDY 183 (447)
T ss_pred -----CCCCCCHHHHHHHHHHHCCCCEEECCCCCHHHHHHCCCHHHHHHHHHHCCCCC
T ss_conf -----67874388999999852998769714334666654157499999999849987
No 116
>COG1973 HypE Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=23.42 E-value=63 Score=14.50 Aligned_cols=52 Identities=25% Similarity=0.404 Sum_probs=36.1
Q ss_pred HHHHHHHHHHCCCCCEEEEEEE-ECCCCCCCCHHH----HHHHHHHHCCCEEEHHHH
Q ss_conf 2677699887699600598885-368875059899----999999838907779999
Q gi|254780359|r 150 TEASVDLCKITGLPPIAVICEL-VNDDGTIKKGKQ----VIEFSKKYDLKIISVQDL 201 (210)
Q Consensus 150 TEaavdL~~lAGl~P~~vi~Ei-l~~~G~~~~~~~----~~~fA~~~~lp~i~i~dl 201 (210)
|-|++-=.-.-|-.|+++|+.+ +.|||+..+.=+ .-..++--++|+++++.|
T Consensus 147 tRAalRDv~vmGa~p~alisDiHlaDDgDVgklfDf~AGvtaVsea~~vPl~aGSTL 203 (449)
T COG1973 147 TRAALRDVYVMGARPVALISDIHLADDGDVGKLFDFTAGVTAVSEAVGVPLLAGSTL 203 (449)
T ss_pred HHHHHHHHHHCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCEECCCCE
T ss_conf 799998898727643033565563367546563012212657888748854336525
No 117
>PRK13132 consensus
Probab=23.33 E-value=18 Score=17.84 Aligned_cols=57 Identities=11% Similarity=0.244 Sum_probs=27.5
Q ss_pred CCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEEHHHCCHHHH-HHHHHH-CCCCEEEECCHHHHH
Q ss_conf 795669999999968982999967789887013348445999999-999970-899458614689998
Q gi|254780359|r 7 LDERYIEDVIQSFQKGEMVIVTDADDRENEADLVLAAIHCTSEKM-AFIIRH-TCGIVCTPMPFHTAH 72 (210)
Q Consensus 7 ~~~~~ie~ai~al~~G~~Viv~D~~dREnEgDlv~~Ae~vt~e~i-~fm~~~-~~Glic~al~~~~~~ 72 (210)
++...+=+.++.+|...|++++---+ .+ -.-..+.. ..+... ..|+|+.=+|.+..+
T Consensus 70 ~~~~~~~~~~~~ir~~~pivlM~Y~N------~i---~~~G~e~F~~~~~~~GvdGlIipDLP~ee~~ 128 (246)
T PRK13132 70 VNTDTVFELLARVKTKKALVFLVYYN------LI---FAYGLEKFVKKAKELGISGLIVPDLPFEESE 128 (246)
T ss_pred CCHHHHHHHHHHHCCCCCEEEEEECH------HH---HHCCHHHHHHHHHHCCCCEEECCCCCHHHHH
T ss_conf 98999999999753699979996010------88---7729999999998769985775799978989
No 118
>TIGR01804 BADH betaine aldehyde dehydrogenase; InterPro: IPR011264 Under osmotic stress, betaine aldehyde dehydrogenase oxidises glycine betaine aldehyde into the osmoprotectant glycine betaine, via the second of two oxidation steps from exogenously supplied choline or betaine aldehyde. This choline-glycine betaine synthesis pathway can be found in Gram-positive and Gram-negative bacteria. In Escherichia coli, betaine aldehyde dehydrogenase (betB) is osmotically co-induced with choline dehydrogenase (betA) in the presence of choline. These dehydrogenases are located in a betaine gene cluster with the upstream choline transporter (betT) and transcriptional regulator (betI) . Similar to E. coli, betaine synthesis in Staphylococcus xylosus is also influenced by osmotic stress and the presence of choline with genes localised in a functionally equivalent gene cluster . Organisation of the betaine gene cluster in Sinorhizobium meliloti and Bacillus subtilis differs from that of E. coli by the absence of upstream choline transporter and transcriptional regulator homologues , . Additionally, Bacillus subtilis co-expresses a type II alcohol dehydrogenase with betaine aldehyde dehydrogenase instead of choline dehydrogenase as in E. coli, Staphylococcus xylosus, and Sinorhizobium meliloti . Betaine aldehyde dehydrogenase is a member of the aldehyde dehydrogenase family. ; GO: 0008802 betaine-aldehyde dehydrogenase activity, 0006578 betaine biosynthetic process.
Probab=23.01 E-value=64 Score=14.45 Aligned_cols=110 Identities=19% Similarity=0.199 Sum_probs=62.4
Q ss_pred HHHCCCEEEEEECCCCCCCCCEEEEHHHCCHHHHHHHHHHCCCCEEEE-----CCHHHHHHHHCCCCCCCC-CCCCCCCE
Q ss_conf 996898299996778988701334844599999999997089945861-----468999874036432445-66566521
Q gi|254780359|r 18 SFQKGEMVIVTDADDRENEADLVLAAIHCTSEKMAFIIRHTCGIVCTP-----MPFHTAHKLKLNPMVLEN-ESVHKTAF 91 (210)
Q Consensus 18 al~~G~~Viv~D~~dREnEgDlv~~Ae~vt~e~i~fm~~~~~Glic~a-----l~~~~~~~L~Lp~m~~~n-~~~~~taF 91 (210)
.|---.|.|||||.|-|--.|.-+.|.| +..|.||-+ +....-+++. ..++.+- .-.-+-.|
T Consensus 246 ELGGKsP~IvFdDADLe~A~d~Al~g~F-----------f~~GQVCs~GtRv~V~~~ik~~F~-~~L~~R~~~I~~Gd~f 313 (471)
T TIGR01804 246 ELGGKSPLIVFDDADLELAVDQALLGNF-----------FSAGQVCSNGTRVFVHKKIKEKFL-ARLVERVKRIKLGDGF 313 (471)
T ss_pred HCCCCCCCCEECCCCHHHHHHHHHHCCC-----------CCCCCEECCCCEEECHHHHHHHHH-HHHHHHHHHCCCCCCC
T ss_conf 0178987413315657888626662241-----------146715047744532467659999-9999988621047886
Q ss_pred EEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHCCCCCCCEEEECCCCC
Q ss_conf 7887203477789998899999999984201324313898500100126982
Q gi|254780359|r 92 TVSVDSKHGITTGISADDRAYTIKNLANPHSIADNFVRPGHIFPLISRDGGV 143 (210)
Q Consensus 92 tvsvd~~~g~tTGISa~DRa~TIr~la~~~~~~~df~~PGHV~pL~a~~gGv 143 (210)
|.....+-=||+..|.+-.+=.....+-..-+..=|.++-...-..|.
T Consensus 314 ----d~~T~~GPliSa~~R~kv~~Yi~~gk~EgA~l~~GG~~p~~~~l~~G~ 361 (471)
T TIGR01804 314 ----DEATEMGPLISAEHRDKVLSYIEKGKEEGARLATGGKVPEDEGLDNGF 361 (471)
T ss_pred ----CHHHCCCCCCCHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCC
T ss_conf ----720247871017778899999987440498897778523777767872
No 119
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase; InterPro: IPR014092 Members of this family are examples of pyruvate oxidase (1.2.3.3 from EC), an enzyme with FAD and TPP as cofactors that catalyses the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase (1.2.2.2 from EC) as in Escherichia coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name..
Probab=22.97 E-value=64 Score=14.44 Aligned_cols=10 Identities=30% Similarity=0.391 Sum_probs=4.7
Q ss_pred HHHHHHCCCC
Q ss_conf 9987403643
Q gi|254780359|r 70 TAHKLKLNPM 79 (210)
Q Consensus 70 ~~~~L~Lp~m 79 (210)
.+++|.+|.|
T Consensus 221 lS~~lk~Pli 230 (577)
T TIGR02720 221 LSEKLKVPLI 230 (577)
T ss_pred HHHHCCCCEE
T ss_conf 9986398848
No 120
>CHL00199 infC translation initiation factor 3; Provisional
Probab=22.91 E-value=64 Score=14.44 Aligned_cols=118 Identities=13% Similarity=0.164 Sum_probs=61.1
Q ss_pred CCEEEEEECCCCCCCCCEEEEHHHCCHHHHHHHHHHCCCCEEEECCHH--HHHHHHCCCCCC----CCCCCCCCCEEEEE
Q ss_conf 982999967789887013348445999999999970899458614689--998740364324----45665665217887
Q gi|254780359|r 22 GEMVIVTDADDRENEADLVLAAIHCTSEKMAFIIRHTCGIVCTPMPFH--TAHKLKLNPMVL----ENESVHKTAFTVSV 95 (210)
Q Consensus 22 G~~Viv~D~~dREnEgDlv~~Ae~vt~e~i~fm~~~~~Glic~al~~~--~~~~L~Lp~m~~----~n~~~~~taFtvsv 95 (210)
-.-|-|+|++ -|+-| |+ -+.+.+......+-.|++++-... .|.=++.-.... .........-.+.+
T Consensus 24 a~~VrlI~~~-G~~lG--v~----~~~eAl~~A~~~gLDLVevsp~a~PPVcKimDygK~~Ye~~Kk~k~~kkkq~~~~~ 96 (182)
T CHL00199 24 YPQVRVIDDS-GSQLG--IF----TSEQALQLAKKQGLDLVLVSEKSDPPVCRIIDYGKYKFEQEKKAKEAKKKQHNSSI 96 (182)
T ss_pred CCEEEEECCC-CCEEC--CE----EHHHHHHHHHHCCCCEEEECCCCCCCEEEEEEHHHHHHHHHHHHHHHHCCCCCEEE
T ss_conf 8989999899-93866--07----19999999998499889988999998789865566899999887764404674266
Q ss_pred ECCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHCCCCCCCEEEECCCCCCCCC-CHHHHHHHHH
Q ss_conf 2034777899988999999999842013243138985001001269824667-8026776998
Q gi|254780359|r 96 DSKHGITTGISADDRAYTIKNLANPHSIADNFVRPGHIFPLISRDGGVLVRP-GHTEASVDLC 157 (210)
Q Consensus 96 d~~~g~tTGISa~DRa~TIr~la~~~~~~~df~~PGHV~pL~a~~gGvl~R~-GHTEaavdL~ 157 (210)
--. -++.+|.++|--.-++.+ ..|..-||=.=+.-+--| |. .|+|.+.+|.
T Consensus 97 KEi-r~~~~I~~hDl~~K~k~a-------~~FL~~G~kVKv~v~frG---RE~~h~e~G~~ll 148 (182)
T CHL00199 97 KEV-KMRYKIEEHDYQVRINQA-------FKFLKAGDKVKATLTFRG---REIQHLSLAINLL 148 (182)
T ss_pred EEE-EEECCCCHHHHHHHHHHH-------HHHHHCCCEEEEEEEEEC---HHHCCHHHHHHHH
T ss_conf 668-987565763899999999-------999867996999999815---4432689999999
No 121
>pfam04227 Indigoidine_A Indigoidine synthase A like protein. Indigoidine is a blue pigment synthesized by Erwinia chrysanthemi implicated in pathogenicity and protection from oxidative stress. IdgA is involved in indigoidine biosynthesis, but its specific function is unknown.
Probab=22.87 E-value=64 Score=14.43 Aligned_cols=161 Identities=19% Similarity=0.230 Sum_probs=89.8
Q ss_pred HHHHHHHCCCEEEEEECCCCCCCCCEEEEHHHCCHHHHHHHHHHCC----------CCEEEECCHHHHHHHHCC-CCCCC
Q ss_conf 9999996898299996778988701334844599999999997089----------945861468999874036-43244
Q gi|254780359|r 14 DVIQSFQKGEMVIVTDADDRENEADLVLAAIHCTSEKMAFIIRHTC----------GIVCTPMPFHTAHKLKLN-PMVLE 82 (210)
Q Consensus 14 ~ai~al~~G~~Viv~D~~dREnEgDlv~~Ae~vt~e~i~fm~~~~~----------Glic~al~~~~~~~L~Lp-~m~~~ 82 (210)
++-+|+++|+||+-..+-==- --|=||--.-+...+.-.+|..+ |.+++.|+++..++|.-. .-+.
T Consensus 2 eV~~Al~~~~PvVALESTIit--HGlP~P~N~~~a~~~e~~vr~~GavPAtiai~~G~~~vGl~~~el~~la~~~~~~~- 78 (293)
T pfam04227 2 EVREALAAGKPVVALESTIIT--HGMPYPQNVETAREVEQIVRENGAVPATIAIIDGRIKVGLSDEELERLAQAGKDVA- 78 (293)
T ss_pred HHHHHHHCCCCEEEEEHHHHH--CCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCEEEECCCHHHHHHHHHCCCCCC-
T ss_conf 468998759988997454554--68998358999999999999779962168999898774699999999972476654-
Q ss_pred CCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHCCCCCCCEEEECCCCCCCCCCH-HHHHHHHHHHCC
Q ss_conf 5665665217887203477789998899999999984201324313898500100126982466780-267769988769
Q gi|254780359|r 83 NESVHKTAFTVSVDSKHGITTGISADDRAYTIKNLANPHSIADNFVRPGHIFPLISRDGGVLVRPGH-TEASVDLCKITG 161 (210)
Q Consensus 83 n~~~~~taFtvsvd~~~g~tTGISa~DRa~TIr~la~~~~~~~df~~PGHV~pL~a~~gGvl~R~GH-TEaavdL~~lAG 161 (210)
--+...-++.++-. .+|- |-+| -|+.. |... --.=|.+= --|||-+-.-. -.-|-||..|+.
T Consensus 79 K~S~RDl~~~~a~~-~~Ga-TTVs-----aTm~i-A~~a-GI~VFaTG--------GIGGVHrg~~~t~DiSaDL~eL~~ 141 (293)
T pfam04227 79 KVSRRDLPYVVATG-KTGA-TTVA-----ATMIL-AHLA-GIKVFATG--------GIGGVHRGAEESFDISADLTELAR 141 (293)
T ss_pred CCCHHHHHHHHHCC-CCCC-CHHH-----HHHHH-HHHC-CCEEEEEC--------CCCCCCCCCCCCCCCCCCHHHHHC
T ss_conf 35530279998158-7652-1099-----99999-9986-98089746--------745125786456321434788815
Q ss_pred CCCEEEEEEEECCCCCCCCHHHHHHHHHHHCCCEEEH
Q ss_conf 9600598885368875059899999999838907779
Q gi|254780359|r 162 LPPIAVICELVNDDGTIKKGKQVIEFSKKYDLKIISV 198 (210)
Q Consensus 162 l~P~~vi~Eil~~~G~~~~~~~~~~fA~~~~lp~i~i 198 (210)
.|++|+|-= .-++++.+.-.+|=+.+|.|++.-
T Consensus 142 -tpv~VVcaG---~KsILDi~~TlE~LET~GV~V~gy 174 (293)
T pfam04227 142 -TPVAVVCAG---AKSILDIPKTLEYLETQGVPVIGY 174 (293)
T ss_pred -CCEEEEECC---CHHHHCCHHHHHHHHHCCCEEEEE
T ss_conf -975999426---076505446899999759438974
No 122
>TIGR00858 bioF 8-amino-7-oxononanoate synthase; InterPro: IPR004723 8-amino-7-oxononanoate synthase (2.3.1.47 from EC) is involved in biotin biosynthesis. Synonym(s): AONS, 8-amino-7-ketopelargonate synthase, 7-keto-8-amino-pelargonic acid synthetase, 7-KAP synthetase; GO: 0008710 8-amino-7-oxononanoate synthase activity, 0009102 biotin biosynthetic process.
Probab=22.87 E-value=46 Score=15.33 Aligned_cols=19 Identities=16% Similarity=0.426 Sum_probs=7.4
Q ss_pred HHHHHHHCCCCEE-EECCHH
Q ss_conf 9999970899458-614689
Q gi|254780359|r 51 MAFIIRHTCGIVC-TPMPFH 69 (210)
Q Consensus 51 i~fm~~~~~Glic-~al~~~ 69 (210)
+.|+++++|.+|+ .+||+.
T Consensus 247 ~~yL~n~AR~~If~TaLPPa 266 (378)
T TIGR00858 247 IDYLINRARTFIFSTALPPA 266 (378)
T ss_pred HHHHHHCCCCCEECCCCCHH
T ss_conf 99998415764232366588
No 123
>PTZ00337 surface protease GP63; Provisional
Probab=22.78 E-value=62 Score=14.56 Aligned_cols=69 Identities=20% Similarity=0.225 Sum_probs=39.5
Q ss_pred CCEEEEHHHCCHHHHHHHHHHCCCCEEEECCHHHHHHHHCCCC-----CCCCCCCCCCCEEEEEECCCCCCCCCCHHHHH
Q ss_conf 0133484459999999999708994586146899987403643-----24456656652178872034777899988999
Q gi|254780359|r 37 ADLVLAAIHCTSEKMAFIIRHTCGIVCTPMPFHTAHKLKLNPM-----VLENESVHKTAFTVSVDSKHGITTGISADDRA 111 (210)
Q Consensus 37 gDlv~~Ae~vt~e~i~fm~~~~~Glic~al~~~~~~~L~Lp~m-----~~~n~~~~~taFtvsvd~~~g~tTGISa~DRa 111 (210)
.+.+=+....|.|+-..++++ +|=-|+ +-.++||-..|. +.......-..|+|+..|. |+|++.+|-.
T Consensus 113 ~~~C~aedILT~eKk~il~~~---ilP~Av-klH~eRLlV~p~~~~~~Vp~~~~~~C~~FtVP~~H~---t~GV~~AD~V 185 (567)
T PTZ00337 113 AITCEADDVLTEERRNIILRQ---TLPAAI-QLHAERLSVRPVTRPVLIPRTGLGMCDNFTIPHKHH---TVGVAGADMI 185 (567)
T ss_pred EEEECCHHCCCHHHHHHHHHH---HHHHHH-HHHHHHHCEEECCCCEEECCCCCCCCCCCCCCHHHC---CCCCCCCCEE
T ss_conf 557741311579999999987---768887-765675344635687676885677666877972420---5786787779
Q ss_pred H
Q ss_conf 9
Q gi|254780359|r 112 Y 112 (210)
Q Consensus 112 ~ 112 (210)
+
T Consensus 186 L 186 (567)
T PTZ00337 186 L 186 (567)
T ss_pred E
T ss_conf 9
No 124
>PRK05973 replicative DNA helicase; Provisional
Probab=22.68 E-value=48 Score=15.22 Aligned_cols=22 Identities=9% Similarity=0.306 Sum_probs=19.0
Q ss_pred HHHHHHHHHHCCCEEEHHHHHH
Q ss_conf 9999999983890777999999
Q gi|254780359|r 182 KQVIEFSKKYDLKIISVQDLIA 203 (210)
Q Consensus 182 ~~~~~fA~~~~lp~i~i~dli~ 203 (210)
..++.||++.++|+|-++.|=+
T Consensus 173 RsLK~lAkEl~vPVvaLSQLnR 194 (237)
T PRK05973 173 RALKSFARKRGVILVFISQIDR 194 (237)
T ss_pred HHHHHHHHHHCCCEEEEECCCC
T ss_conf 9999999986993999400364
No 125
>TIGR01404 FlhB_rel_III type III secretion protein, YscU/HrpY family; InterPro: IPR006307 This is one of several families of proteins related to bacterial flagellar biosynthesis proteins and involved in bacterial type III protein secretion systems. This family is homologous to, but distinguished from, the flagellar biosynthetic protein FlhB (IPR006136 from INTERPRO). This model may not identify all type III secretion system FlhB homologs. ; GO: 0006810 transport, 0016021 integral to membrane.
Probab=22.15 E-value=67 Score=14.34 Aligned_cols=55 Identities=18% Similarity=0.327 Sum_probs=42.0
Q ss_pred CHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHCCCEEEHHHHHH--HHH
Q ss_conf 80267769988769960059888536887505989999999983890777999999--998
Q gi|254780359|r 148 GHTEASVDLCKITGLPPIAVICELVNDDGTIKKGKQVIEFSKKYDLKIISVQDLIA--WRK 206 (210)
Q Consensus 148 GHTEaavdL~~lAGl~P~~vi~Eil~~~G~~~~~~~~~~fA~~~~lp~i~i~dli~--yr~ 206 (210)
..|--||.|=-..|.+|.=.|..+ |+-+....+.++|++.|+|++.=-.|-+ |+.
T Consensus 265 NPTHiAi~iyY~p~etPlP~i~~~----g~d~~A~~~~~~A~~~giPvv~~~~LAR~Ly~~ 321 (346)
T TIGR01404 265 NPTHIAIGIYYKPGETPLPLIIAK----GTDAQALAVIAYAEEAGIPVVRDIPLARQLYRT 321 (346)
T ss_pred CCCCEEEEECCCCCCCCCCEEEEE----CCCHHHHHHHHHHHHCCCCEECCCHHHHHHHHH
T ss_conf 660101121025677898778873----564899999999997589852274799999840
No 126
>cd03361 TOPRIM_TopoIA_RevGyr TopoIA_RevGyr : The topoisomerase-primase (TORPIM) domain found in members of the type IA family of DNA topoisomerases (Topo IA) similar to the ATP-dependent reverse gyrase found in archaea and thermophilic bacteria. Type IA DNA topoisomerases remove (relax) negative supercoils in the DNA by: cleaving one strand of the DNA duplex, covalently linking to the 5' phosphoryl end of the DNA break and, allowing the other strand of the duplex to pass through the gap. Reverse gyrase is also able to insert positive supercoils in the presence of ATP and negative supercoils in the presence of AMPPNP. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). For topoisomerases the conserved glutamate is believed to act as a general base in strand joining and, as a general acid in strand cleavage. The DXD motif may co-ordinate Mg2+, a cofactor required for full catalytic function.
Probab=22.00 E-value=67 Score=14.32 Aligned_cols=42 Identities=17% Similarity=0.069 Sum_probs=19.8
Q ss_pred CHHHHHHHHHHHHHHHCCHHHHCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf 988999999999842013243138985001001269824667802677699887699
Q gi|254780359|r 106 SADDRAYTIKNLANPHSIADNFVRPGHIFPLISRDGGVLVRPGHTEASVDLCKITGL 162 (210)
Q Consensus 106 Sa~DRa~TIr~la~~~~~~~df~~PGHV~pL~a~~gGvl~R~GHTEaavdL~~lAGl 162 (210)
+......+++.++..... ...|.+. .|.|..= +..++++.+.
T Consensus 104 ~k~k~v~~lk~lak~ad~-----------v~lATD~---DREGEaI-a~hi~~~l~~ 145 (170)
T cd03361 104 DKLETLEALRELALEVDE-----------VLIATDP---DTEGEKI-AWDVYLALRP 145 (170)
T ss_pred CHHHHHHHHHHHHHCCCE-----------EEECCCC---CCCHHHH-HHHHHHHHCC
T ss_conf 489999999999860897-----------9985799---8222299-9999999557
No 127
>TIGR00453 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; InterPro: IPR001228 The bacterial ispD protein catalyzes the third step of the deoxyxylulose-5-phosphate pathway (DXP) of isoprenoid biosynthesis; the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate.; GO: 0008299 isoprenoid biosynthetic process.
Probab=21.12 E-value=70 Score=14.21 Aligned_cols=41 Identities=17% Similarity=0.291 Sum_probs=31.2
Q ss_pred CHHHHHHHHHHH---HCCCEEEEEECCCCCCCCCEEEEHHHCCHHHHHHHHHHCC
Q ss_conf 956699999999---6898299996778988701334844599999999997089
Q gi|254780359|r 8 DERYIEDVIQSF---QKGEMVIVTDADDRENEADLVLAAIHCTSEKMAFIIRHTC 59 (210)
Q Consensus 8 ~~~~ie~ai~al---~~G~~Viv~D~~dREnEgDlv~~Ae~vt~e~i~fm~~~~~ 59 (210)
.-.||-.+|+++ +..++|+|+|.. | -+++++.|..++..+.
T Consensus 80 Rq~SV~~GL~a~~~~~~~~~VlvHDaA-R----------Pf~~~~~~~~l~~~~~ 123 (226)
T TIGR00453 80 RQDSVRNGLKALPERADAEIVLVHDAA-R----------PFVPKELIDRLLEALE 123 (226)
T ss_pred HHHHHHHHHHHHHHCCCCCEEEEECCC-C----------CCCCHHHHHHHHHHHH
T ss_conf 689999999987635898828984773-4----------5889879999999986
No 128
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=20.97 E-value=70 Score=14.19 Aligned_cols=68 Identities=13% Similarity=0.253 Sum_probs=48.8
Q ss_pred CCCCCHHHHHHHHHHHHHHHCCHHHHCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEEE
Q ss_conf 7899988999999999842013243138985001001269824667802677699887699600598885
Q gi|254780359|r 102 TTGISADDRAYTIKNLANPHSIADNFVRPGHIFPLISRDGGVLVRPGHTEASVDLCKITGLPPIAVICEL 171 (210)
Q Consensus 102 tTGISa~DRa~TIr~la~~~~~~~df~~PGHV~pL~a~~gGvl~R~GHTEaavdL~~lAGl~P~~vi~Ei 171 (210)
|.|++..+-+.-.+. -.....-.|..|-|+.||+---+|-...+--.+.+.++++-.|..|+.|--|+
T Consensus 118 TSsl~is~la~~~~~--p~R~ig~HffNPp~l~pLVEIV~g~~Ts~~~v~~~~~~~~~lGk~PV~v~ke~ 185 (308)
T PRK06129 118 TSALLASAFTEHLAG--RERCLVAHPINPPYLIPVVEVVPAPWTAPATVARAHALYRAAGQSPVRLRREI 185 (308)
T ss_pred CCCCCHHHHHHHCCC--CCCEEEECCCCCHHCCCCEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 553889999974598--54178877778600063156717999898999999999998399889990256
No 129
>PRK11630 hypothetical protein; Provisional
Probab=20.95 E-value=71 Score=14.19 Aligned_cols=61 Identities=13% Similarity=0.182 Sum_probs=34.1
Q ss_pred CHHHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEEHHHCCHHHHHHHHH-----HCCCCEEEECCHHHHHHH
Q ss_conf 9566999999996898299996778988701334844599999999997-----089945861468999874
Q gi|254780359|r 8 DERYIEDVIQSFQKGEMVIVTDADDRENEADLVLAAIHCTSEKMAFIIR-----HTCGIVCTPMPFHTAHKL 74 (210)
Q Consensus 8 ~~~~ie~ai~al~~G~~Viv~D~~dREnEgDlv~~Ae~vt~e~i~fm~~-----~~~Glic~al~~~~~~~L 74 (210)
+.+.|++|++.|++|+.|+.=-| +-.-+.+..-+++.+.-+.+ ....++.++-+.+...++
T Consensus 13 ~~~~I~~A~~~L~~Ggvv~~PTd------TvYGlg~d~~n~~Av~ki~~iK~R~~~kpl~ll~~~~~~~~~~ 78 (206)
T PRK11630 13 QQRLINQAVDIVRKGGVIVYPTD------SGYALGCKIEDKNAMERICRIRQLPDGHNFTLMCRDLSELSTY 78 (206)
T ss_pred CHHHHHHHHHHHHCCCEEEEECC------CHHHHEECCCCHHHHHHHHHHHCCCCCCCCCEECCCHHHHHHH
T ss_conf 98999999999977998999677------5465225589989999999865899789862134899999977
No 130
>COG0482 TrmU Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis]
Probab=20.92 E-value=44 Score=15.50 Aligned_cols=128 Identities=16% Similarity=0.091 Sum_probs=66.1
Q ss_pred CHHHHHHHHCCCCCCCCCCCCCC-CEEEEEE-CCCCCCCCCCHHHHHHHH---HHHHHHHCCHHHHCCCCCCCEEEECCC
Q ss_conf 68999874036432445665665-2178872-034777899988999999---999842013243138985001001269
Q gi|254780359|r 67 PFHTAHKLKLNPMVLENESVHKT-AFTVSVD-SKHGITTGISADDRAYTI---KNLANPHSIADNFVRPGHIFPLISRDG 141 (210)
Q Consensus 67 ~~~~~~~L~Lp~m~~~n~~~~~t-aFtvsvd-~~~g~tTGISa~DRa~TI---r~la~~~~~~~df~~PGHV~pL~a~~g 141 (210)
-...|++||+|..+.+-...+.. -|...++ ...|- |=..+.+=-+.| ..|.-......||.--||.-=++-.++
T Consensus 55 a~~va~~LGIp~~~vdf~~~y~~~V~~~f~~~Y~~G~-TPNPci~CN~~iKF~~~l~~a~~lgad~iATGHYar~~~~~~ 133 (356)
T COG0482 55 AERVADQLGIPLYVVDFEKEFWNKVFEYFLAEYKAGK-TPNPCILCNKEIKFKALLDYAKELGADYIATGHYARQREDEG 133 (356)
T ss_pred HHHHHHHHCCCEEEECHHHHHHHHHHHHHHHHHHCCC-CCCCCHHCCHHHHHHHHHHHHHHCCCCEEEEEEEEEEECCCC
T ss_conf 9999998099559984689988888887789985799-999651048788999999999975998578744676543776
Q ss_pred CCCCCCCHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHCCCEEE
Q ss_conf 82466780267769988769960059888536887505989999999983890777
Q gi|254780359|r 142 GVLVRPGHTEASVDLCKITGLPPIAVICELVNDDGTIKKGKQVIEFSKKYDLKIIS 197 (210)
Q Consensus 142 Gvl~R~GHTEaavdL~~lAGl~P~~vi~Eil~~~G~~~~~~~~~~fA~~~~lp~i~ 197 (210)
...-++|.-..-.-=-.|+.+.+ ..+.-++.+-|. +..+++++.|.+++|+.-.
T Consensus 134 ~~~l~r~~D~~KDQsYfL~~~~~-~ql~~~lFPlG~-l~K~evR~iA~~~gL~~a~ 187 (356)
T COG0482 134 IELLLRGVDLNKDQSYFLYALSQ-EQLERLLFPLGD-LEKLEVRPIAAEKGLPTAK 187 (356)
T ss_pred CCCCCCCCCCCCCHHHEECCCCH-HHHHHCCCCCCC-CCHHHHHHHHHHCCCCCCC
T ss_conf 00014678742030002012688-777532256777-7778999999975997667
No 131
>pfam04531 Phage_holin_1 Bacteriophage holin. This family of holins is found in several staphylococcal and streptococcal bacteriophages. Holins are a diverse family of proteins that cause bacterial membrane lysis during late-protein synthesis. It is thought that the temporal precision of holin-mediated lysis may occur through the buildup of a holin oligomer which causes the lysis.
Probab=20.72 E-value=59 Score=14.69 Aligned_cols=20 Identities=30% Similarity=0.446 Sum_probs=14.6
Q ss_pred EEEEECCCCCCCCCCHHHHHHHH
Q ss_conf 78872034777899988999999
Q gi|254780359|r 92 TVSVDSKHGITTGISADDRAYTI 114 (210)
Q Consensus 92 tvsvd~~~g~tTGISa~DRa~TI 114 (210)
.+-+| -+|-|+||++||.+-
T Consensus 60 Gii~D---PTT~G~sDS~~al~Y 79 (84)
T pfam04531 60 GIITD---PTTKGLSDSERALNY 79 (84)
T ss_pred HHCCC---CCCCCCCHHHHHHHC
T ss_conf 00048---999886518998624
No 132
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=20.67 E-value=71 Score=14.15 Aligned_cols=139 Identities=13% Similarity=0.153 Sum_probs=70.3
Q ss_pred HHHHHHHHHCCCEEEEEECCCCCCCCCEEEEHHHCCHHHHHHHHHHCCCCEEEECCHHHHHHHHCCCCCCCCCCCCCCCE
Q ss_conf 99999999689829999677898870133484459999999999708994586146899987403643244566566521
Q gi|254780359|r 12 IEDVIQSFQKGEMVIVTDADDRENEADLVLAAIHCTSEKMAFIIRHTCGIVCTPMPFHTAHKLKLNPMVLENESVHKTAF 91 (210)
Q Consensus 12 ie~ai~al~~G~~Viv~D~~dREnEgDlv~~Ae~vt~e~i~fm~~~~~Glic~al~~~~~~~L~Lp~m~~~n~~~~~taF 91 (210)
+.=|..--+.|+-|.++|.+ +..|. +.-|. +| ++.....++|-. +.. .+.-=
T Consensus 18 ~~la~~l~~~g~~v~~~d~d-------i~gps-------ip~~~---rG----p~~~~~i~q~l~------~~~-w~~lD 69 (169)
T cd02037 18 VNLALALAKLGYKVGLLDAD-------IYGPS-------IPKMW---RG----PMKMGAIKQFLT------DVD-WGELD 69 (169)
T ss_pred HHHHHHHHHCCCCEEEEEEE-------CCCCC-------CCEEE---EC----HHHHHHHHHHHH------HCC-CCCCC
T ss_conf 99999999879978999713-------79997-------55012---04----738999999998------525-46678
Q ss_pred EEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEEE
Q ss_conf 78872034777899988999999999842013243138985001001269824667802677699887699600598885
Q gi|254780359|r 92 TVSVDSKHGITTGISADDRAYTIKNLANPHSIADNFVRPGHIFPLISRDGGVLVRPGHTEASVDLCKITGLPPIAVICEL 171 (210)
Q Consensus 92 tvsvd~~~g~tTGISa~DRa~TIr~la~~~~~~~df~~PGHV~pL~a~~gGvl~R~GHTEaavdL~~lAGl~P~~vi~Ei 171 (210)
.+-||...| +|+ -..|+-... |-.-..++..|--+.- --+..++++++-.|.+..+++--|
T Consensus 70 yLIID~PPG----tgD--~~lt~~~~~-----------~~d~~IvVTTP~~~s~--~Da~r~i~~~~~~~i~i~GvVeNM 130 (169)
T cd02037 70 YLVIDMPPG----TGD--EHLTLAQSL-----------PIDGAVIVTTPQEVAL--DDVRKAIDMFKKVNIPILGVVENM 130 (169)
T ss_pred EEEEECCCC----CCH--HHHHHHHHC-----------CCCCEEEEECCCHHHH--HHHHHHHHHHHHCCCCEEEEEECC
T ss_conf 899968999----870--778798750-----------5674799946958899--999999999997599707999879
Q ss_pred EC-------CCCCCCCHHHHHHHHHHHCCCEEE
Q ss_conf 36-------887505989999999983890777
Q gi|254780359|r 172 VN-------DDGTIKKGKQVIEFSKKYDLKIIS 197 (210)
Q Consensus 172 l~-------~~G~~~~~~~~~~fA~~~~lp~i~ 197 (210)
-. ...........+++|+++++|++-
T Consensus 131 s~~~c~~c~~~~~ifg~~~~~~la~~~~i~~Lg 163 (169)
T cd02037 131 SYFVCPHCGKKIYIFGKGGGEKLAEELGVPLLG 163 (169)
T ss_pred CCCCCCCCCCEEECCCCCHHHHHHHHHCCCEEE
T ss_conf 666079999735278884499999995999898
No 133
>cd01993 Alpha_ANH_like_II This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=20.23 E-value=73 Score=14.09 Aligned_cols=19 Identities=11% Similarity=0.356 Sum_probs=17.0
Q ss_pred CCHHHHHHHHHHHCCCEEE
Q ss_conf 5989999999983890777
Q gi|254780359|r 179 KKGKQVIEFSKKYDLKIIS 197 (210)
Q Consensus 179 ~~~~~~~~fA~~~~lp~i~ 197 (210)
.+..++.+||++|++|++.
T Consensus 158 ~~k~ei~~y~~~~~l~~~e 176 (185)
T cd01993 158 VREKEIVLYAELNGLPFVE 176 (185)
T ss_pred CCHHHHHHHHHHCCCCEEE
T ss_conf 9899999999987998788
Done!