Query         gi|254780359|ref|YP_003064772.1| GTP cyclohydrolase II protein (riboflavin biosynthesis) [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 210
No_of_seqs    114 out of 1786
Neff          5.2 
Searched_HMMs 33803
Date          Wed Jun  1 12:23:54 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780359.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 >1snn_A DHBP synthase, 3,4-dih 100.0       0       0  531.2  20.9  201    9-210     1-225 (227)
  2 >1g57_A DHBP synthase, 3,4-dih 100.0       0       0  526.6  21.0  206    4-209     8-213 (217)
  3 >1k4i_A 3,4-dihydroxy-2-butano 100.0       0       0  522.6  18.8  202    8-209    11-224 (233)
  4 >1tks_A 3,4-dihydroxy-2-butano 100.0       0       0  512.8  19.9  200    8-207     4-204 (204)
  5 >2z67_A O-phosphoseryl-tRNA(SE  68.1     9.7 0.00029   19.2   5.6   49  149-197   172-220 (314)
  6 >1ko7_A HPR kinase/phosphatase  62.3     7.6 0.00022   19.9   3.1   71  124-199    41-111 (129)
  7 >2dkj_A Serine hydroxymethyltr  62.1     7.8 0.00023   19.8   3.2   45  153-197   120-164 (244)
  8 >1y0n_A Hypothetical UPF0270 p  61.2      13 0.00039   18.4   5.1   39    4-46     33-71  (78)
  9 >3gyb_A Transcriptional regula  58.7      14 0.00043   18.1   6.5  125    9-150    20-147 (151)
 10 >2fnu_A Aminotransferase; prot  58.5      15 0.00043   18.1   4.5   60   10-69     26-97  (238)
 11 >3ecd_A Serine hydroxymethyltr  56.6      12 0.00037   18.5   3.4   42  156-197   123-164 (243)
 12 >1gc0_A Methionine gamma-lyase  56.5      15 0.00043   18.1   3.8   42  156-197   144-185 (260)
 13 >1b9h_A AHBA synthase, protein  52.8      15 0.00044   18.0   3.3   35  162-196   123-157 (250)
 14 >3frk_A QDTB; aminotransferase  52.4      18 0.00054   17.5   5.0   19   11-29     33-51  (237)
 15 >2rgy_A Transcriptional regula  50.8      13 0.00038   18.4   2.7   95    9-120    23-125 (132)
 16 >2vyc_A Biodegradative arginin  50.7      13 0.00038   18.4   2.7   48  151-198   157-208 (301)
 17 >1c4k_A Protein (ornithine dec  48.3      21 0.00063   17.1   4.1   45  153-197   162-207 (306)
 18 >1mdo_A ARNB aminotransferase;  47.3      19 0.00055   17.4   3.1   57   10-66     26-92  (243)
 19 >2po3_A 4-dehydrase; external   46.6      23 0.00067   16.9   4.4   23  173-195   119-141 (233)
 20 >3dr4_A Putative perosamine sy  46.3      23 0.00067   16.9   3.7   39  159-197   138-176 (267)
 21 >2cb1_A O-acetyl homoserine su  46.2      23 0.00068   16.8   4.3   39  158-196   136-174 (277)
 22 >2vi8_A Serine hydroxymethyltr  45.9      21 0.00062   17.1   3.2   43  155-197   122-164 (243)
 23 >1o69_A Aminotransferase; stru  45.6      23 0.00067   16.9   3.3   18   46-63    107-124 (394)
 24 >1w96_A ACC, acetyl-coenzyme A  43.4      19 0.00056   17.3   2.7   17  180-196     6-22  (66)
 25 >3jsz_A LGT1, putative unchara  41.2      14 0.00041   18.2   1.7   12   43-54     65-76  (303)
 26 >3iuu_A MLRC-like, putative me  40.3      22 0.00066   16.9   2.6   47    9-60      3-50  (197)
 27 >1n8p_A Cystathionine gamma-ly  39.0      29 0.00087   16.2   4.0   70  126-196   100-172 (251)
 28 >1cs1_A CGS, protein (cystathi  38.1      30  0.0009   16.1   4.7   42  156-197   130-172 (246)
 29 >3a2b_A Serine palmitoyltransf  35.7      33 0.00098   15.8   4.7   31  166-196    97-127 (191)
 30 >3k28_A Glutamate-1-semialdehy  35.6      33 0.00099   15.8   4.0   62  136-197    66-132 (186)
 31 >1ibj_A CBL, cystathionine bet  34.0      35   0.001   15.7   4.8   47  151-197   205-252 (326)
 32 >2jya_A AGR_C_3324P, uncharact  32.4      35   0.001   15.7   2.6   19  180-198    60-78  (106)
 33 >2a7v_A Serine hydroxymethyltr  32.2      38  0.0011   15.5   3.2   36  162-197   138-173 (266)
 34 >2vpq_A Acetyl-COA carboxylase  32.2      38  0.0011   15.5   3.1   16  180-195     7-22  (70)
 35 >2uvp_A HOBA; hypothetical pro  31.1      38  0.0011   15.5   2.6   25   11-35      9-33  (153)
 36 >3g7u_A Cytosine-specific meth  30.4     6.5 0.00019   20.3  -1.4   26  108-133    27-52  (63)
 37 >1a9x_A Carbamoyl phosphate sy  29.2      41  0.0012   15.2   2.5   15  181-195    10-24  (68)
 38 >3b8x_A WBDK, pyridoxamine 5-p  28.7      43  0.0013   15.1   3.7   61    9-69     36-112 (390)
 39 >2oga_A Transaminase; PLP-depe  28.1      44  0.0013   15.0   3.6   25  172-196   120-144 (233)
 40 >2bbw_A Adenylate kinase 4, AK  28.1      44  0.0013   15.0   4.6   33  171-204    32-64  (182)
 41 >1knx_A Probable HPR(Ser) kina  27.8      35   0.001   15.7   2.0   65  128-197    48-112 (119)
 42 >3hvy_A Cystathionine beta-lya  27.6      45  0.0013   15.0   3.8   43  155-197   103-150 (215)
 43 >1bs0_A Protein (8-amino-7-oxo  27.6      45  0.0013   15.0   5.1   30  167-196    97-126 (187)
 44 >3gmt_A Adenylate kinase; ssgc  27.4      46  0.0014   15.0   4.6   32  171-203    13-44  (149)
 45 >2a8j_A Taspase 1, threonine a  27.4      27  0.0008   16.4   1.3   27  177-203   163-189 (420)
 46 >2wqd_A Phosphoenolpyruvate-pr  27.0      19 0.00058   17.3   0.5   79   37-115    36-123 (140)
 47 >2gez_A L-asparaginase alpha s  26.9      28 0.00083   16.3   1.3   24  174-197    46-69  (69)
 48 >3c19_A Uncharacterized protei  26.7      40  0.0012   15.3   2.1   29  179-207    50-80  (101)
 49 >1v72_A Aldolase; PLP-dependen  26.4      48  0.0014   14.8   3.2   51  147-197   123-178 (259)
 50 >1y88_A Hypothetical protein A  26.3      40  0.0012   15.3   2.0   18  146-163   102-119 (144)
 51 >2cob_A LCOR protein; MLR2, KI  25.9      49  0.0014   14.8   3.0   21    4-24     11-31  (70)
 52 >2w7t_A CTP synthetase, putati  25.6      36  0.0011   15.6   1.7   40  158-197    61-101 (180)
 53 >3h7f_A Serine hydroxymethyltr  25.6      49  0.0015   14.8   4.4   90  108-197    64-164 (242)
 54 >3hqs_A CAI-1 autoinducer synt  25.4      50  0.0015   14.7   4.1   55  143-197   166-221 (409)
 55 >1rv3_A Serine hydroxymethyltr  25.1      50  0.0015   14.7   4.0   39  158-196   134-172 (266)
 56 >1k2x_A Putative L-asparaginas  24.4      27 0.00081   16.4   0.9   23  175-197    46-68  (68)
 57 >1uc8_A LYSX, lysine biosynthe  23.9      53  0.0016   14.6   2.5   15  181-195    10-24  (72)
 58 >1m22_A Peptide amidase, PAM;   23.7      54  0.0016   14.5   3.2   27  182-208    17-43  (83)
 59 >1zym_A Enzyme I; phosphotrans  22.4      51  0.0015   14.7   1.9   77   36-112    32-117 (137)
 60 >3e6g_A Xometc, cystathionine   22.2      57  0.0017   14.3   3.7   33  165-197   154-187 (262)
 61 >1qz9_A Kynureninase; kynureni  22.1      58  0.0017   14.3   5.4   43  155-197    95-138 (210)
 62 >1ulz_A Pyruvate carboxylase N  21.5      59  0.0017   14.3   3.1   12   70-81     14-25  (71)
 63 >2yrx_A Phosphoribosylglycinam  21.5      59  0.0018   14.3   2.6   10   71-80     17-26  (72)
 64 >2w8t_A SPT, serine palmitoylt  21.4      59  0.0018   14.2   4.2   23   47-69     35-57  (164)
 65 >2hwg_A Phosphoenolpyruvate-pr  21.3      39  0.0012   15.4   1.2   82   36-117    32-122 (136)
 66 >1tif_A IF3-N, translation ini  21.2      60  0.0018   14.2   2.9   31  169-199    16-49  (78)
 67 >3gbx_A Serine hydroxymethyltr  20.5      62  0.0018   14.1   4.0   36  161-196   127-162 (245)
 68 >3bb8_A CDP-4-keto-6-deoxy-D-g  20.4      62  0.0018   14.1   4.7   59   10-68     65-141 (437)

No 1  
>>1snn_A DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin biosynthesis, isomerase; HET: 5RP; 1.55A {Methanocaldococcus jannaschii} (A:)
Probab=100.00  E-value=0  Score=531.19  Aligned_cols=201  Identities=31%  Similarity=0.554  Sum_probs=195.2

Q ss_pred             HHHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEEHHHCCHHHHHHHHHHCCCCEEEECCHHHHHHHHCCCCCC-------
Q ss_conf             5669999999968982999967789887013348445999999999970899458614689998740364324-------
Q gi|254780359|r    9 ERYIEDVIQSFQKGEMVIVTDADDRENEADLVLAAIHCTSEKMAFIIRHTCGIVCTPMPFHTAHKLKLNPMVL-------   81 (210)
Q Consensus         9 ~~~ie~ai~al~~G~~Viv~D~~dREnEgDlv~~Ae~vt~e~i~fm~~~~~Glic~al~~~~~~~L~Lp~m~~-------   81 (210)
                      +++|++||++||+|+||||+|+++||||||||++|+++||++|+||++|++|+||+++++++|++|+||+|+.       
T Consensus         1 ~~~ie~ai~al~~G~~Viv~D~~~RE~Egdlv~~Ae~~T~e~i~fm~~~a~GliC~a~~~~~a~~L~Lp~m~~~~~~~~~   80 (227)
T 1snn_A            1 MNNVEKAIEALKKGEIILVYDSDEREGETDMVVASQFITPEHIRIMRKDAGGLICTALHPDICNKLGIPFMVDILEFASQ   80 (227)
T ss_dssp             -CHHHHHHHHHHTTCCEEEECCTTTTCCEEEEEEGGGCCHHHHHHHHHHTEEEEEEEECHHHHHHHTCCCHHHHHHHHTT
T ss_pred             CCCHHHHHHHHHCCCEEEEEECCCCCCCCCEEEEHHHCCHHHHHHHHHHCCCCEEECCCHHHHHHCCCCCCCCCCCCCCC
T ss_conf             96399999999879979998589987651489885659999999999957998774589999987699511230000111


Q ss_pred             -----------CCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHH------HHCCHHHHCCCCCCCEEEECCCCCC
Q ss_conf             -----------45665665217887203477789998899999999984------2013243138985001001269824
Q gi|254780359|r   82 -----------ENESVHKTAFTVSVDSKHGITTGISADDRAYTIKNLAN------PHSIADNFVRPGHIFPLISRDGGVL  144 (210)
Q Consensus        82 -----------~n~~~~~taFtvsvd~~~g~tTGISa~DRa~TIr~la~------~~~~~~df~~PGHV~pL~a~~gGvl  144 (210)
                                 .|+..++++|||||||+ +++|||||+|||+|||.|++      ++++|+||++|||||||++++|||+
T Consensus        81 ~~~~~~~~~~~~~~~~~~t~FtvsVd~~-~~~TGISa~DRa~Tir~la~~~~~~~~~~~~~df~~PGHV~pL~a~~gGvl  159 (227)
T 1snn_A           81 KFKVLRELYPNDIPYDEKSSFSITINHR-KTFTGITDNDRAFTIKKLAELVKEGRFNDFGKEFRSPGSVTLLRAAEGLVK  159 (227)
T ss_dssp             TCHHHHHTCCTTCTTSSSCCEEEEEEET-TCSSSCSHHHHHHHHHHHHHHHHTTCGGGHHHHEEEEEEEEEEECCTTGGG
T ss_pred             CCCCCCCCCCCCCCCCCCCCEEEEEECC-CCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCEECCCEEECCCCC
T ss_conf             2332123445677666774169987046-776897606788899998731122486545344058860135035037734


Q ss_pred             CCCCHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHCCCEEEHHHHHHHHHHCCC
Q ss_conf             667802677699887699600598885368875059899999999838907779999999984379
Q gi|254780359|r  145 VRPGHTEASVDLCKITGLPPIAVICELVNDDGTIKKGKQVIEFSKKYDLKIISVQDLIAWRKKKEI  210 (210)
Q Consensus       145 ~R~GHTEaavdL~~lAGl~P~~vi~Eil~~~G~~~~~~~~~~fA~~~~lp~i~i~dli~yr~~~ei  210 (210)
                      +|+||||||||||+||||+|++|||||||++|+||+++++++||++|+||+++|+|||+||+++|+
T Consensus       160 ~R~GhTEasvdL~~lAGl~p~~vi~eil~~~G~~~~~~~~~~fA~~h~l~~isi~dli~yr~~~e~  225 (227)
T 1snn_A          160 NRQGHTEMTVALAELANLVPITTICEMMGDDGNAMSKNETKRYAEKHNLIYLSGEEIINYYLDKYL  225 (227)
T ss_dssp             TCCSHHHHHHHHHHHTTSCSEEEEEEEBCTTSSBCCHHHHHHHHHHHTCCEEEHHHHHHHC-----
T ss_pred             CCCCHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHCCCCEEEHHHHHHHHHHHHH
T ss_conf             666378899999974699744999999679987458899999999849978989999999998761


No 2  
>>1g57_A DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavine biosynthesis, skeletal rearrangement, antimicrobial target; 1.40A {Escherichia coli} (A:)
Probab=100.00  E-value=0  Score=526.59  Aligned_cols=206  Identities=39%  Similarity=0.689  Sum_probs=202.5

Q ss_pred             CCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEEHHHCCHHHHHHHHHHCCCCEEEECCHHHHHHHHCCCCCCCC
Q ss_conf             75779566999999996898299996778988701334844599999999997089945861468999874036432445
Q gi|254780359|r    4 KKSLDERYIEDVIQSFQKGEMVIVTDADDRENEADLVLAAIHCTSEKMAFIIRHTCGIVCTPMPFHTAHKLKLNPMVLEN   83 (210)
Q Consensus         4 ~~~~~~~~ie~ai~al~~G~~Viv~D~~dREnEgDlv~~Ae~vt~e~i~fm~~~~~Glic~al~~~~~~~L~Lp~m~~~n   83 (210)
                      ..++.+++|++||++||+|+||||+|+++||||||||++||++|+++|+||++|++|+||+++++++|++|+||+|+..|
T Consensus         8 ~~~~~~~~v~~ai~alr~G~~Viv~D~~~re~egdlv~aAe~~t~e~i~fm~~~~~Glic~a~~~~~a~~L~Lp~m~~~~   87 (217)
T 1g57_A            8 SFGTPFERVENALAALREGRGVMVLDDEDRENEGDMIFPAETMTVEQMALTIRHGSGIVCLCITEDRRKQLDLPMMVENN   87 (217)
T ss_dssp             GGCCHHHHHHHHHHHHHTTCCEEEEC----CCCEEEEEETTTCCHHHHHHHHHHBCSCCEEEECHHHHHHTTCCBSCSSC
T ss_pred             HCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEEHHHCCHHHHHHHHHHCCCEEEEECCHHHHHHCCCCCCCCCC
T ss_conf             51694236999999998899799986899876505898856599999999998189819980689999555985745455


Q ss_pred             CCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHCCCC
Q ss_conf             66566521788720347778999889999999998420132431389850010012698246678026776998876996
Q gi|254780359|r   84 ESVHKTAFTVSVDSKHGITTGISADDRAYTIKNLANPHSIADNFVRPGHIFPLISRDGGVLVRPGHTEASVDLCKITGLP  163 (210)
Q Consensus        84 ~~~~~taFtvsvd~~~g~tTGISa~DRa~TIr~la~~~~~~~df~~PGHV~pL~a~~gGvl~R~GHTEaavdL~~lAGl~  163 (210)
                      ++.++++|||||||++|++|||||+||++|||.|+|++++++||++|||||||++++|||++|+|||||+||||+||||.
T Consensus        88 ~~~~~~~ftvsVd~~~g~~TGISa~DRa~Tir~lad~~~~~~df~~PGHv~pL~a~~gGvl~R~GhtEaavdLa~lAGl~  167 (217)
T 1g57_A           88 TSAYGTGFTVTIEAAEGVTTGVSAADRITTVRAAIADGAKPSDLNRPGHVFPLRAQAGGVLTRGGHTEATIDLMTLAGFK  167 (217)
T ss_dssp             CCTTCCCBBSCEEESSSCSSSCSHHHHHHHHHHHHSTTCCGGGEEEEEEEEEEECCTTGGGTCCSHHHHHHHHHHHTTSC
T ss_pred             CCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCHHHCCCCCCCCCEEECCCCCCCCCCHHHHHHHHHHHCCCC
T ss_conf             66777754566651567568868889999999985668886761699810731004688546785788988799874999


Q ss_pred             CEEEEEEEECCCCCCCCHHHHHHHHHHHCCCEEEHHHHHHHHHHCC
Q ss_conf             0059888536887505989999999983890777999999998437
Q gi|254780359|r  164 PIAVICELVNDDGTIKKGKQVIEFSKKYDLKIISVQDLIAWRKKKE  209 (210)
Q Consensus       164 P~~vi~Eil~~~G~~~~~~~~~~fA~~~~lp~i~i~dli~yr~~~e  209 (210)
                      |++|||||++++|+||+.+++++||++|+||+++|+|||+||+++|
T Consensus       168 P~avi~eil~~dG~~~~~~~~~~fA~~h~l~~i~i~dli~yr~~~e  213 (217)
T 1g57_A          168 PAGVLCELTNDDGTMARAPECIEFANKHNMALVTIEDLVAYRQAHE  213 (217)
T ss_dssp             SCEEEEEBBCTTSSBCCHHHHHHHHHHTTCEEEEHHHHHHHHHHHC
T ss_pred             CEEEEEEEECCCCCCCCHHHHHHHHHHCCCCEEEHHHHHHHHHHHC
T ss_conf             7499999876988715889999999984997998999999999716


No 3  
>>1k4i_A 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin biosynthesis, antimicrobial target, structure-based design, isomerase; 0.98A {Magnaporthe grisea} (A:)
Probab=100.00  E-value=0  Score=522.62  Aligned_cols=202  Identities=45%  Similarity=0.775  Sum_probs=197.8

Q ss_pred             CHHHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEEHHHCCHHHHHHHHHHCCCCEEEECCHHHHHHHHCCCCCCCCCCCC
Q ss_conf             95669999999968982999967789887013348445999999999970899458614689998740364324456656
Q gi|254780359|r    8 DERYIEDVIQSFQKGEMVIVTDADDRENEADLVLAAIHCTSEKMAFIIRHTCGIVCTPMPFHTAHKLKLNPMVLENESVH   87 (210)
Q Consensus         8 ~~~~ie~ai~al~~G~~Viv~D~~dREnEgDlv~~Ae~vt~e~i~fm~~~~~Glic~al~~~~~~~L~Lp~m~~~n~~~~   87 (210)
                      .+++|++||++||+|+||||+||++||||||||++||++|+++|+||++|++|+||+++++++|++|+||+|+..|++.+
T Consensus        11 ~~~~i~~ai~al~~G~~Viv~Dd~~rE~egdlv~aAe~~T~e~i~fm~~~~~Glic~ai~~~~~~~L~Lp~m~~~n~~~~   90 (233)
T 1k4i_A           11 NFDAIPDVIQAFKNGEFVVVLDDPSRENEADLIIAAESVTTEQMAFMVRHSSGLICAPLTPERTTALDLPQMVTHNADPR   90 (233)
T ss_dssp             -CCCHHHHHHHHHTTCCEEEECCTTTTCCEEEEEEGGGCCHHHHHHHHHHBCSCCEEEECHHHHHHTTCCBSCSSCCCSS
T ss_pred             CCCCHHHHHHHHHCCCEEEEEECCCCCCCCCEEEEHHHCCHHHHHHHHHHCCCCEEEEECHHHHHCCCCCCCCCCCCCCC
T ss_conf             38659999999988996999967998875058978676999999999985898689975788872468855334677756


Q ss_pred             CCCEEEEEECC-CCCCCCCCHHHHHHHHHHHHHHHCCHHHHCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEE
Q ss_conf             65217887203-47778999889999999998420132431389850010012698246678026776998876996005
Q gi|254780359|r   88 KTAFTVSVDSK-HGITTGISADDRAYTIKNLANPHSIADNFVRPGHIFPLISRDGGVLVRPGHTEASVDLCKITGLPPIA  166 (210)
Q Consensus        88 ~taFtvsvd~~-~g~tTGISa~DRa~TIr~la~~~~~~~df~~PGHV~pL~a~~gGvl~R~GHTEaavdL~~lAGl~P~~  166 (210)
                      +++||+|||++ .+++|||||+|||+|||+|++++++++||++|||||||++++|||++|+|||||+||||+|||++|++
T Consensus        91 ~t~ftvsvda~~~g~~TGISa~DRa~Tir~Lad~~~~~~df~~PGHv~pL~a~~gGvl~R~GhtEaavdLarlAGl~P~a  170 (233)
T 1k4i_A           91 GTAYTVSVDAEHPSTTTGISAHDRALACRMLAAPDAQPSHFRRPGHVFPLRAVAGGVRARRGHTEAGVELCRLAGKRPVA  170 (233)
T ss_dssp             CCCBBCCEEECSTTCSSSCSHHHHHHHHHHHHCTTCCGGGEEEEEEEEEEECCTTHHHHCCSHHHHHHHHHHHTTCCSBE
T ss_pred             CCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCHHHHCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCE
T ss_conf             67752147730577667878999999999862888886661699764225643798367897889999999982999718


Q ss_pred             EEEEEECCCCC-----------CCCHHHHHHHHHHHCCCEEEHHHHHHHHHHCC
Q ss_conf             98885368875-----------05989999999983890777999999998437
Q gi|254780359|r  167 VICELVNDDGT-----------IKKGKQVIEFSKKYDLKIISVQDLIAWRKKKE  209 (210)
Q Consensus       167 vi~Eil~~~G~-----------~~~~~~~~~fA~~~~lp~i~i~dli~yr~~~e  209 (210)
                      ||||||+++|+           ||+++++++||++|+||+++|+|||+||+++|
T Consensus       171 vicEil~~dG~~~~~~~~~~~~ma~~~~~~~fA~~h~l~~i~i~dli~yr~~~e  224 (233)
T 1k4i_A          171 VISEIVDDGQEVEGRAVRAAPGMLRGDECVAFARRWGLKVCTIEDMIAHVEKTE  224 (233)
T ss_dssp             EEEEBEECCEECTTSSCEESCEECCHHHHHHHHHHTTCEEEEHHHHHHHHHHHH
T ss_pred             EEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEHHHHHHHHHHCC
T ss_conf             999994089865543333431234549999999980996898999999998523


No 4  
>>1tks_A 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin biosynthesis, synthetic gene, isomerase; 1.60A {Candida albicans SC5314} (A:)
Probab=100.00  E-value=0  Score=512.79  Aligned_cols=200  Identities=45%  Similarity=0.745  Sum_probs=196.4

Q ss_pred             CHHHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEEHHHCCHHHHHHHHHHCCCCEEEECCHHHHHHHHCCCCCCCCCCCC
Q ss_conf             95669999999968982999967789887013348445999999999970899458614689998740364324456656
Q gi|254780359|r    8 DERYIEDVIQSFQKGEMVIVTDADDRENEADLVLAAIHCTSEKMAFIIRHTCGIVCTPMPFHTAHKLKLNPMVLENESVH   87 (210)
Q Consensus         8 ~~~~ie~ai~al~~G~~Viv~D~~dREnEgDlv~~Ae~vt~e~i~fm~~~~~Glic~al~~~~~~~L~Lp~m~~~n~~~~   87 (210)
                      .+++|++||++||+|+||||+|+++||||||||++||++|+++|+||++|++|+||+|+++++|++|+||+|+..|.+.+
T Consensus         4 ~~~~i~~ai~alr~G~~Viv~D~~~re~egdlv~aAe~~t~e~i~fm~~~~~Glic~ai~~~~a~~L~Lp~m~~~~~~~~   83 (204)
T 1tks_A            4 IFTPIEEALEAYKNGEFLIVMDDEDRENEGDLIMAAELITQEKMAFLVRYSSGYVCVPLSEERANQLELPPMLANRSDRH   83 (204)
T ss_dssp             CSCCHHHHHHHHHTTCCEEEESSSCTTCBCEEEEEGGGCCHHHHHHHHHTBCSCCEEEEEHHHHHHTTCCBSCC------
T ss_pred             CCCCHHHHHHHHHCCCEEEEEECCCCCCCCCEEEEHHHCCHHHHHHHHHHCCCCEEEECCHHHHHHHCCCCCCCCCCCCC
T ss_conf             52439999999988996999968998774068989798899999999984588758845899986750786556666777


Q ss_pred             CCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEE
Q ss_conf             65217887203477789998899999999984201324313898500100126982466780267769988769960059
Q gi|254780359|r   88 KTAFTVSVDSKHGITTGISADDRAYTIKNLANPHSIADNFVRPGHIFPLISRDGGVLVRPGHTEASVDLCKITGLPPIAV  167 (210)
Q Consensus        88 ~taFtvsvd~~~g~tTGISa~DRa~TIr~la~~~~~~~df~~PGHV~pL~a~~gGvl~R~GHTEaavdL~~lAGl~P~~v  167 (210)
                      +++|+|||||+.|++|||||+||++|||.|+|++++++||++|||||||++++|||++|+|||||+||||+||||+|++|
T Consensus        84 ~t~ftvsvda~~g~~TGISa~DRa~Tir~lad~~~~~~df~~PGHv~pL~a~~ggvl~R~GhtEaavdL~~lAgl~P~av  163 (204)
T 1tks_A           84 GTAYTITCDFAEGTTTGISAHDRALTTRSLANPNSKPQDFIKPGHILPLRAVPGLLKKRRGHTEAAVQLSTLAGLQPAGV  163 (204)
T ss_dssp             CCCBBCCEEESTTCSSSCSHHHHHHHHHHHHCTTCCGGGEEEEEEEEEEEECTTGGGTCCCHHHHHHHHHHHTTSCSBEE
T ss_pred             CCCEEEECCCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEE
T ss_conf             77511000024688877359999999998737899877850454311146525781457658999999998279987079


Q ss_pred             EEEEEC-CCCCCCCHHHHHHHHHHHCCCEEEHHHHHHHHHH
Q ss_conf             888536-8875059899999999838907779999999984
Q gi|254780359|r  168 ICELVN-DDGTIKKGKQVIEFSKKYDLKIISVQDLIAWRKK  207 (210)
Q Consensus       168 i~Eil~-~~G~~~~~~~~~~fA~~~~lp~i~i~dli~yr~~  207 (210)
                      |||||+ ++|+|++.+++++||++|+||+++|+|||+||++
T Consensus       164 i~eil~d~dG~~~~~~~~~~fA~~h~l~~i~i~dli~yr~~  204 (204)
T 1tks_A          164 ICELVRDEDGLMMRLDDCIQFGKKHGIKIININQLVEYISK  204 (204)
T ss_dssp             EEEBBCTTTCCBCBHHHHHHHHHHHTCCEEEHHHHHHHHCC
T ss_pred             EEEEEECCCCCCCCHHHHHHHHHHCCCCEEEHHHHHHHHHC
T ss_conf             99998889987648999999999839969989999999849


No 5  
>>2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, pyridoxal-5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis S2} (A:47-360)
Probab=68.14  E-value=9.7  Score=19.18  Aligned_cols=49  Identities=12%  Similarity=0.087  Sum_probs=41.4

Q ss_pred             HHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHCCCEEE
Q ss_conf             0267769988769960059888536887505989999999983890777
Q gi|254780359|r  149 HTEASVDLCKITGLPPIAVICELVNDDGTIKKGKQVIEFSKKYDLKIIS  197 (210)
Q Consensus       149 HTEaavdL~~lAGl~P~~vi~Eil~~~G~~~~~~~~~~fA~~~~lp~i~  197 (210)
                      .-|..++-..-++..+..+++-.-+..|...+.+++.+++++||++++-
T Consensus       172 ~l~~~i~~~~~~~~~~~v~~~~~~~~~g~~~~l~~I~~l~~~~gi~liv  220 (314)
T 2z67_A          172 DIENAIKKEIELGNRPCVLSTLTFFPPRNSDDIVEIAKICENYDIPHII  220 (314)
T ss_dssp             HHHHHHHHHHHTTCCEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEE
T ss_pred             HHHHHHHHCCCCCCEEEEEECCCCCCCCEECCHHHHHHHHHHCCCEEEE
T ss_conf             9999998560338659999714878996301499999999981985999


No 6  
>>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} (A:1-129)
Probab=62.35  E-value=7.6  Score=19.86  Aligned_cols=71  Identities=14%  Similarity=0.080  Sum_probs=49.9

Q ss_pred             HHHHCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHCCCEEEHH
Q ss_conf             2431389850010012698246678026776998876996005988853688750598999999998389077799
Q gi|254780359|r  124 ADNFVRPGHIFPLISRDGGVLVRPGHTEASVDLCKITGLPPIAVICELVNDDGTIKKGKQVIEFSKKYDLKIISVQ  199 (210)
Q Consensus       124 ~~df~~PGHV~pL~a~~gGvl~R~GHTEaavdL~~lAGl~P~~vi~Eil~~~G~~~~~~~~~~fA~~~~lp~i~i~  199 (210)
                      .-+|.+||-+...-.++-+.+..-...+..--+.++....+++++.-     +....-+++.++|+++++|+++..
T Consensus        41 ~~~~~~~~~i~i~g~~e~~~l~~l~~~~~~~~~~~~~~~~~~~iiit-----~~~~~~~~i~~~a~~~~iPil~t~  111 (129)
T 1ko7_A           41 YFSHYASDRIQLLGTTELSFYNLLPDEERKGRMRKLCRPETPAIIVT-----RDLEPPEELIEAAKEHETPLITSK  111 (129)
T ss_dssp             CCTTCCTTSEEEECHHHHHHHHHSCHHHHTTHHHHHCCTTCCCEEEC-----TTCCCCHHHHHHHHHTTCCEEECC
T ss_pred             CCCCCCCCEEEEECHHHHHHHHHCCHHHHHHHHHHHHCCCCCEEEEE-----CCCCCCHHHHHHHHHHCCEEEECC
T ss_conf             66566898799985899999986899999999999736799889997-----999998999999998198399848


No 7  
>>2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics, NPPSFA; HET: PLP; 1.15A {Thermus thermophilus HB8} (A:33-276)
Probab=62.13  E-value=7.8  Score=19.76  Aligned_cols=45  Identities=9%  Similarity=-0.051  Sum_probs=36.4

Q ss_pred             HHHHHHHCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHCCCEEE
Q ss_conf             769988769960059888536887505989999999983890777
Q gi|254780359|r  153 SVDLCKITGLPPIAVICELVNDDGTIKKGKQVIEFSKKYDLKIIS  197 (210)
Q Consensus       153 avdL~~lAGl~P~~vi~Eil~~~G~~~~~~~~~~fA~~~~lp~i~  197 (210)
                      .-+|.+...=.+..|++...+..|...+.+++.++|++||++++-
T Consensus       120 ~~~l~~~i~~~t~~v~~~~~~~~G~~~~i~~i~~la~~~g~~l~v  164 (244)
T 2dkj_A          120 LEEVRRLALEHRPKVIVAGASAYPRFWDFKAFREIADEVGAYLVV  164 (244)
T ss_dssp             HHHHHHHHHHHCCSEEEECCSSCCSCCCHHHHHHHHHHHTCEEEE
T ss_pred             HHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHHHHHHHCCCEEEC
T ss_conf             999999998639998982554565555789999876311857871


No 8  
>>1y0n_A Hypothetical UPF0270 protein PA3463; MCSG, midwest center for structural genomics, protein structure initiative, PSI; 2.00A {Pseudomonas aeruginosa PAO1} (A:)
Probab=61.19  E-value=13  Score=18.37  Aligned_cols=39  Identities=18%  Similarity=0.343  Sum_probs=27.4

Q ss_pred             CCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEEHHHC
Q ss_conf             7577956699999999689829999677898870133484459
Q gi|254780359|r    4 KKSLDERYIEDVIQSFQKGEMVIVTDADDRENEADLVLAAIHC   46 (210)
Q Consensus         4 ~~~~~~~~ie~ai~al~~G~~Viv~D~~dREnEgDlv~~Ae~v   46 (210)
                      +.++ ...|+++..+|++|+.||+||...   |.-=+.+.+..
T Consensus        33 E~sl-~~kv~qv~~qL~~G~aviv~se~~---Es~~I~~k~~~   71 (78)
T 1y0n_A           33 ETPL-DVRVERARHALRRGEAVILFDPES---QQCQLMLRSEV   71 (78)
T ss_dssp             -CCH-HHHHHHHHHHHHTTSEEEEECTTT---CCEEEEEGGGS
T ss_pred             HCCH-HHHHHHHHHHHHCCCEEEEECCCC---CEEEEEEHHHH
T ss_conf             4129-999999999998699899987988---74741659983


No 9  
>>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum} (A:1-101,A:231-280)
Probab=58.70  E-value=14  Score=18.10  Aligned_cols=125  Identities=14%  Similarity=0.148  Sum_probs=75.8

Q ss_pred             HHHHHHHHHHH--HCCCEEEEEECCCCCCCCCEEEEHHHCCHHHHHHHHHHCCCCEEEECCH-HHHHHHHCCCCCCCCCC
Q ss_conf             56699999999--6898299996778988701334844599999999997089945861468-99987403643244566
Q gi|254780359|r    9 ERYIEDVIQSF--QKGEMVIVTDADDRENEADLVLAAIHCTSEKMAFIIRHTCGIVCTPMPF-HTAHKLKLNPMVLENES   85 (210)
Q Consensus         9 ~~~ie~ai~al--~~G~~Viv~D~~dREnEgDlv~~Ae~vt~e~i~fm~~~~~Glic~al~~-~~~~~L~Lp~m~~~n~~   85 (210)
                      +..+-+.|+..  +.|.-+++++..+.+.|-+.+          -.++.+...|+|..+... +.+.+.++|..+.....
T Consensus        20 ~~~li~gI~~aa~~~Gy~vii~~s~~~~~e~~~i----------~~ll~~~VDGIIi~~~~~~~~L~~~~IPiV~Idr~~   89 (151)
T 3gyb_A           20 FIDLIQSLSDVLTPKGYRLSVIDSLTSQAGTDPI----------TSALSXRPDGIIIAQDIPDFTVPDSLPPFVIAGTRI   89 (151)
T ss_dssp             GHHHHHHHHHHHGGGTCEEEEECSSSSCSSSCHH----------HHHHTTCCSEEEEESCC--------CCCEEEESCCC
T ss_pred             HHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHH----------HHHHHHCCCEEEECCCCHHHHHHCCCCCEEEECCCC
T ss_conf             9999999999999869989999689998999999----------999971985355125301266641478626523446


Q ss_pred             CCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHCCCCCCCEEEECCCCCCCCCCHH
Q ss_conf             56652178872034777899988999999999842013243138985001001269824667802
Q gi|254780359|r   86 VHKTAFTVSVDSKHGITTGISADDRAYTIKNLANPHSIADNFVRPGHIFPLISRDGGVLVRPGHT  150 (210)
Q Consensus        86 ~~~taFtvsvd~~~g~tTGISa~DRa~TIr~la~~~~~~~df~~PGHV~pL~a~~gGvl~R~GHT  150 (210)
                      ......+|..|..-|  .|..   -|.-.-..-+|++.--+...  -+.|-....|-...|.||-
T Consensus        90 ~~~~~~~V~~DN~~~--~~~~---~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~  147 (151)
T 3gyb_A           90 TQASTHDSVANDSIG--VGYN---AALLLLSXLDPEAPHPEIXH--TLQPSLIERGTCAPREGHH  147 (151)
T ss_dssp             SSSCSTTEEEECHHH--HHHH---HHHHHHHHHCTTSCCCCCCS--EECCEEECCSSCCCC----
T ss_pred             CCCCCCCCCCHHHHH--HHHH---HHHHHHHHHCCCCCCCCEEE--EECCEEEECCCCCCCCCCC
T ss_conf             887665532114999--9999---99999999639999984489--9675899447899999988


No 10 
>>2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal- kingston bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori 26695} (A:10-247)
Probab=58.47  E-value=15  Score=18.07  Aligned_cols=60  Identities=7%  Similarity=0.076  Sum_probs=30.5

Q ss_pred             HHHHHHHHHHHCCCEEEEEECCC------------CCCCCCEEEEHHHCCHHHHHHHHHHCCCCEEEECCHH
Q ss_conf             66999999996898299996778------------9887013348445999999999970899458614689
Q gi|254780359|r   10 RYIEDVIQSFQKGEMVIVTDADD------------RENEADLVLAAIHCTSEKMAFIIRHTCGIVCTPMPFH   69 (210)
Q Consensus        10 ~~ie~ai~al~~G~~Viv~D~~d------------REnEgDlv~~Ae~vt~e~i~fm~~~~~Glic~al~~~   69 (210)
                      ..+++.+..+-.++.++++-+--            .-++||.|+.-...-+.....+..++...+.+.....
T Consensus        26 ~~l~~~la~~~~~~~~v~~~sgt~a~~~~~~~~~~~~~~~d~vi~~~~~~~~~~~~~~~~g~~~~~v~~~~~   97 (238)
T 2fnu_A           26 LLFEEALCEFLGVKHALVFNSATSALLTLYRNFSEFSADRNEIITTPISFVATANMLLESGYTPVFAGIKND   97 (238)
T ss_dssp             HHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHSSCCCTTSCEEEECSSSCTHHHHHHHHTTCEEEECCBCTT
T ss_pred             HHHHHHHHHHHCCCEEEEEECHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCCEECCCCCCCCCCCCCC
T ss_conf             999999999978195999816899999999985545799770521134432120000036874222433333


No 11 
>>3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, cytoplasm, one-carbon metabolism, pyridoxal phosphate; 1.60A {Burkholderia pseudomallei} (A:42-284)
Probab=56.56  E-value=12  Score=18.52  Aligned_cols=42  Identities=5%  Similarity=-0.074  Sum_probs=34.1

Q ss_pred             HHHHCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHCCCEEE
Q ss_conf             988769960059888536887505989999999983890777
Q gi|254780359|r  156 LCKITGLPPIAVICELVNDDGTIKKGKQVIEFSKKYDLKIIS  197 (210)
Q Consensus       156 L~~lAGl~P~~vi~Eil~~~G~~~~~~~~~~fA~~~~lp~i~  197 (210)
                      |.+.-.-....|+..-.+..|...+.+++.++|++||++++-
T Consensus       123 l~~~i~~~t~~v~~~~~s~~g~~~~l~~i~~la~~~g~~~~v  164 (243)
T 3ecd_A          123 VEALAQQHKPSLIIAGFSAYPRKLDFARFRAIADSVGAKLMV  164 (243)
T ss_dssp             HHHHHHHHCCSEEEEECSCCCSCCCHHHHHHHHHHHTCEEEE
T ss_pred             HHHHHHHHCCCEEEECCCCCCCCCCHHHHHHHHHHHCCEEEC
T ss_conf             999999738776874453455546689998765432330421


No 12 
>>1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} (A:1-260)
Probab=56.46  E-value=15  Score=18.05  Aligned_cols=42  Identities=10%  Similarity=0.065  Sum_probs=31.6

Q ss_pred             HHHHCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHCCCEEE
Q ss_conf             988769960059888536887505989999999983890777
Q gi|254780359|r  156 LCKITGLPPIAVICELVNDDGTIKKGKQVIEFSKKYDLKIIS  197 (210)
Q Consensus       156 L~~lAGl~P~~vi~Eil~~~G~~~~~~~~~~fA~~~~lp~i~  197 (210)
                      +..+..-++..+++.+-+..|.....+++.++|++||++++-
T Consensus       144 ~~~~~~~~~~v~v~~~~~~~G~~~~l~~i~~la~~~g~~l~v  185 (260)
T 1gc0_A          144 EAAMTPATRVIYFESPANPNMHMADIAGVAKIARKHGATVVV  185 (260)
T ss_dssp             HHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHGGGTCEEEE
T ss_pred             HHHCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHCCCCEEE
T ss_conf             986587761899946788665655769999999981992884


No 13 
>>1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} (A:1-250)
Probab=52.79  E-value=15  Score=17.99  Aligned_cols=35  Identities=11%  Similarity=0.194  Sum_probs=19.7

Q ss_pred             CCCEEEEEEEECCCCCCCCHHHHHHHHHHHCCCEE
Q ss_conf             96005988853688750598999999998389077
Q gi|254780359|r  162 LPPIAVICELVNDDGTIKKGKQVIEFSKKYDLKII  196 (210)
Q Consensus       162 l~P~~vi~Eil~~~G~~~~~~~~~~fA~~~~lp~i  196 (210)
                      ..+..+++...+..|...+.+++.++|++|++++|
T Consensus       123 ~~~~~~~~~p~~~~g~~~~l~~i~~~a~~~~~~li  157 (250)
T 1b9h_A          123 VTPRTKVIMPVHMAGLMADMDALAKISADTGVPLL  157 (250)
T ss_dssp             CCTTEEEECCBCGGGCCCCHHHHHHHHHHHTCCBC
T ss_pred             CCCCCCCCEEEECCCCCCCCCCCHHHCHHHCHHHC
T ss_conf             12332011000011113443100000000000000


No 14 
>>3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum} (A:8-244)
Probab=52.43  E-value=18  Score=17.46  Aligned_cols=19  Identities=11%  Similarity=0.073  Sum_probs=8.8

Q ss_pred             HHHHHHHHHHCCCEEEEEE
Q ss_conf             6999999996898299996
Q gi|254780359|r   11 YIEDVIQSFQKGEMVIVTD   29 (210)
Q Consensus        11 ~ie~ai~al~~G~~Viv~D   29 (210)
                      .+++++..+-..+-++++-
T Consensus        33 ~l~~~la~~~~~~~~i~~~   51 (237)
T 3frk_A           33 KFEQEFADYCNVNYCIGCG   51 (237)
T ss_dssp             HHHHHHHHHHTSSEEEEES
T ss_pred             HHHHHHHHHHCCCEEEEEC
T ss_conf             9999999986959799956


No 15 
>>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, sugar binding protein, structural genomics; 2.05A {Burkholderia phymatum STM815} (A:1-110,A:244-265)
Probab=50.82  E-value=13  Score=18.45  Aligned_cols=95  Identities=14%  Similarity=0.081  Sum_probs=47.8

Q ss_pred             HHHHHHHH-HHH-HCCCEEEEEECCCCCCCCCEEEEHHHCCHHHHH-HHHHHCCCCEEEEC--CHHH---HHHHHCCCCC
Q ss_conf             56699999-999-689829999677898870133484459999999-99970899458614--6899---9874036432
Q gi|254780359|r    9 ERYIEDVI-QSF-QKGEMVIVTDADDRENEADLVLAAIHCTSEKMA-FIIRHTCGIVCTPM--PFHT---AHKLKLNPMV   80 (210)
Q Consensus         9 ~~~ie~ai-~al-~~G~~Viv~D~~dREnEgDlv~~Ae~vt~e~i~-fm~~~~~Glic~al--~~~~---~~~L~Lp~m~   80 (210)
                      +..+-+.+ +++ +.|--+++....+.+....       --.+.+. +..+...|+|..+.  +...   +.+-++|...
T Consensus        23 ~~~ii~gi~~~a~~~gy~lii~~~~~~~~~~~-------~~~~~i~~l~~~~vDGiIi~~~~~~~~~i~~l~~~~IPvV~   95 (132)
T 2rgy_A           23 YGTILKQTDLELRAVHRHVVVATGCGESTPRE-------QALEAVRFLIGRDCDGVVVISHDLHDEDLDELHRXHPKXVF   95 (132)
T ss_dssp             HHHHHHHHHHHHHHTTCEEEEECCCSSSCHHH-------HHHHHHHHHHHTTCSEEEECCSSSCHHHHHHHHHHCSSEEE
T ss_pred             HHHHHHHHHHHHHHCCCEEEEEECCCCCCCHH-------HHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCCCEE
T ss_conf             99999999999998699799996889864199-------99999999985699989852232104789987403764203


Q ss_pred             CCCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf             4456656652178872034777899988999999999842
Q gi|254780359|r   81 LENESVHKTAFTVSVDSKHGITTGISADDRAYTIKNLANP  120 (210)
Q Consensus        81 ~~n~~~~~taFtvsvd~~~g~tTGISa~DRa~TIr~la~~  120 (210)
                      .... ......+|.+|..+- |        -..+|.|.+.
T Consensus        96 id~~-~~~~~~~V~~D~~~~-~--------~~~~~~~~~~  125 (132)
T 2rgy_A           96 LNRA-FDALPDASFCPTAEL-T--------QNAVRWLINQ  125 (132)
T ss_dssp             ESSC-CTTSGGGEECCHHHH-H--------HHHHHHHHHH
T ss_pred             EEEC-CCCCCCCCCCCHHHH-H--------HHHHHHHHHH
T ss_conf             5203-432234420359999-9--------9999999998


No 16 
>>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent enzyme, lyase, cytoplasm, acid resistance; HET: LLP; 2.4A {Escherichia coli} (A:140-440)
Probab=50.70  E-value=13  Score=18.39  Aligned_cols=48  Identities=13%  Similarity=0.118  Sum_probs=34.3

Q ss_pred             HHHHHHHHHCC----CCCEEEEEEEECCCCCCCCHHHHHHHHHHHCCCEEEH
Q ss_conf             67769988769----9600598885368875059899999999838907779
Q gi|254780359|r  151 EASVDLCKITG----LPPIAVICELVNDDGTIKKGKQVIEFSKKYDLKIISV  198 (210)
Q Consensus       151 EaavdL~~lAG----l~P~~vi~Eil~~~G~~~~~~~~~~fA~~~~lp~i~i  198 (210)
                      |..++..+.+.    -+++.++|-.-+..|..++.+++.++|++|++.++.-
T Consensus       157 e~~l~~~~~~~~~~~~~~~~~~~~p~np~G~~~~~~~i~~ia~~~~~~~i~D  208 (301)
T 2vyc_A          157 QKKISESPLTKDKAGQKPSYCVVTNCTYDGVCYNAKEAQDLLEKTSDRLHFD  208 (301)
T ss_dssp             HHHHHHCTTTGGGTTCCCSCEEEESSCTTSEEECHHHHHHHHTTTCSEEEEE
T ss_pred             HHHHHHCHHHHHHCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHCCCEEEEE
T ss_conf             9998759243553347870899968877862148999999997639939994


No 17 
>>1c4k_A Protein (ornithine decarboxylase); HET: PLP GTP; 2.70A {Lactobacillus SP} (A:109-414)
Probab=48.33  E-value=21  Score=17.06  Aligned_cols=45  Identities=20%  Similarity=0.059  Sum_probs=34.1

Q ss_pred             HHHHHHHCCCCCEEEEEEE-ECCCCCCCCHHHHHHHHHHHCCCEEE
Q ss_conf             7699887699600598885-36887505989999999983890777
Q gi|254780359|r  153 SVDLCKITGLPPIAVICEL-VNDDGTIKKGKQVIEFSKKYDLKIIS  197 (210)
Q Consensus       153 avdL~~lAGl~P~~vi~Ei-l~~~G~~~~~~~~~~fA~~~~lp~i~  197 (210)
                      ..++.++..-.+..++++- -+..|.....+++.++|++|+++++.
T Consensus       162 ~~~~~~~~~~~t~~i~~~~~~~~~G~~~~l~~i~~la~~~~~~~i~  207 (306)
T 1c4k_A          162 KVDPERAKWKRPFRLAVIQLGTYDGTIYNAHEVVKRIGHLCDYIEF  207 (306)
T ss_dssp             TSSHHHHTCSCCBSEEEEESBCTTSEEECHHHHHHHHGGGBSEEEE
T ss_pred             CCCHHHHHCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHCCCEEEE
T ss_conf             1487666224885289996688876635999999999752998999


No 18 
>>1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} (A:17-259)
Probab=47.33  E-value=19  Score=17.40  Aligned_cols=57  Identities=11%  Similarity=0.102  Sum_probs=24.2

Q ss_pred             HHHHHHHHHHHCCCEEEEEECC----------CCCCCCCEEEEHHHCCHHHHHHHHHHCCCCEEEEC
Q ss_conf             6699999999689829999677----------89887013348445999999999970899458614
Q gi|254780359|r   10 RYIEDVIQSFQKGEMVIVTDAD----------DRENEADLVLAAIHCTSEKMAFIIRHTCGIVCTPM   66 (210)
Q Consensus        10 ~~ie~ai~al~~G~~Viv~D~~----------dREnEgDlv~~Ae~vt~e~i~fm~~~~~Glic~al   66 (210)
                      ..+++.+.++-.++-.+++-+-          -.-..||.|+.-.-.-+.....+...+.-.+.+.+
T Consensus        26 ~~l~~~~~~~~g~e~~i~~~sGt~a~~~~~~~~~~~~Gd~Vl~~~~~~~~~~~~~~~~g~~~v~~~~   92 (243)
T 1mdo_A           26 QELEAAFCRLTGNQYAVAVSSATAGXHIALXALGIGEGDEVITPSXTWVSTLNXIVLLGANPVXVDV   92 (243)
T ss_dssp             HHHHHHHHHHHCCSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCHHHHHHHHHTTCEEEEECB
T ss_pred             HHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHCCCCCCCEEECCCCEEHHHHHHHHHCCCEEEEECC
T ss_conf             9999999999782959996788999999999819999898957996403310365335988899414


No 19 
>>2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae} (A:28-260)
Probab=46.57  E-value=23  Score=16.88  Aligned_cols=23  Identities=13%  Similarity=0.107  Sum_probs=8.4

Q ss_pred             CCCCCCCCHHHHHHHHHHHCCCE
Q ss_conf             68875059899999999838907
Q gi|254780359|r  173 NDDGTIKKGKQVIEFSKKYDLKI  195 (210)
Q Consensus       173 ~~~G~~~~~~~~~~fA~~~~lp~  195 (210)
                      +..|.+...+++.++|++||+++
T Consensus       119 ~~~g~~~~~~~i~~~a~~~g~~l  141 (233)
T 2po3_A          119 HLWGRPCAADQLRKVADEHGLRL  141 (233)
T ss_dssp             CGGGCCCCHHHHHHHHHHTTCEE
T ss_pred             CCCCCCCCCCCHHHHHHCCCCCC
T ss_conf             35686533330011221157240


No 20 
>>3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A* (A:1-267)
Probab=46.34  E-value=23  Score=16.86  Aligned_cols=39  Identities=18%  Similarity=0.194  Sum_probs=24.5

Q ss_pred             HCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHCCCEEE
Q ss_conf             769960059888536887505989999999983890777
Q gi|254780359|r  159 ITGLPPIAVICELVNDDGTIKKGKQVIEFSKKYDLKIIS  197 (210)
Q Consensus       159 lAGl~P~~vi~Eil~~~G~~~~~~~~~~fA~~~~lp~i~  197 (210)
                      .....+..+++-.-+..|...+.+++.+++++||++++.
T Consensus       138 ~~~~~~~~~~~~~~np~g~~~~~~~i~~~~~~~g~~iiv  176 (267)
T 3dr4_A          138 EALITPRTKAIMPVHLYGQICDMDPILEVARRHNLLVIE  176 (267)
T ss_dssp             GGGCCTTEEEECCBCGGGCCCCHHHHHHHHHHTTCEEEE
T ss_pred             HHHCCCCCCEEEEECCCCCHHCHHHHHHHHHHCCCEEEE
T ss_conf             984589981999979877710799999999984999999


No 21 
>>2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus} (A:1-277)
Probab=46.18  E-value=23  Score=16.85  Aligned_cols=39  Identities=3%  Similarity=0.097  Sum_probs=20.3

Q ss_pred             HHCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHCCCEE
Q ss_conf             876996005988853688750598999999998389077
Q gi|254780359|r  158 KITGLPPIAVICELVNDDGTIKKGKQVIEFSKKYDLKII  196 (210)
Q Consensus       158 ~lAGl~P~~vi~Eil~~~G~~~~~~~~~~fA~~~~lp~i  196 (210)
                      ++..-++..+++-.-+..|.+...+++.++|++||++++
T Consensus       136 ~i~~~t~~i~i~~~~~~~g~~~di~~i~~~a~~~g~~li  174 (277)
T 2cb1_A          136 ALSAKTRAVFVETVANPALLVPDLEALATLAEEAGVALV  174 (277)
T ss_dssp             HCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEE
T ss_pred             HHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCEE
T ss_conf             754486399998788644444418888777776055514


No 22 
>>2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* 2vmr_A* 2vms_A* 2vmt_A* 2vmu_A* 2vmq_A* ... (A:33-275)
Probab=45.85  E-value=21  Score=17.09  Aligned_cols=43  Identities=12%  Similarity=0.040  Sum_probs=34.7

Q ss_pred             HHHHHCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHCCCEEE
Q ss_conf             9988769960059888536887505989999999983890777
Q gi|254780359|r  155 DLCKITGLPPIAVICELVNDDGTIKKGKQVIEFSKKYDLKIIS  197 (210)
Q Consensus       155 dL~~lAGl~P~~vi~Eil~~~G~~~~~~~~~~fA~~~~lp~i~  197 (210)
                      +|.++..-.+.++++-..+..|...+.+++.++|++||++++-
T Consensus       122 ~l~~~i~~~~~~~~~~~~~~~G~~~dl~~i~~ia~~~g~~~~v  164 (243)
T 2vi8_A          122 DVREKARLHRPKLIVAAAAAYPRIIDFAKFREIADEVGAYLMV  164 (243)
T ss_dssp             HHHHHHHHHCCSEEEECCSSCCSCCCHHHHHHHHHHHTCEEEE
T ss_pred             HHHHHHHHHCCCEEEECCCCCCCCCCHHHHHHHHHHHCCEEEH
T ss_conf             9999998625634653134678766899999877651959873


No 23 
>>1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} (A:)
Probab=45.62  E-value=23  Score=16.88  Aligned_cols=18  Identities=6%  Similarity=-0.036  Sum_probs=7.0

Q ss_pred             CCHHHHHHHHHHCCCCEE
Q ss_conf             999999999970899458
Q gi|254780359|r   46 CTSEKMAFIIRHTCGIVC   63 (210)
Q Consensus        46 vt~e~i~fm~~~~~Glic   63 (210)
                      .+++.+.-.++.....++
T Consensus       107 ~~~~~le~~l~~~~~~v~  124 (394)
T 1o69_A          107 IDVDLLKLAIKECEKKPK  124 (394)
T ss_dssp             BCHHHHHHHHHHCSSCCC
T ss_pred             CCHHHHHHHHHHCCCCCE
T ss_conf             220335555410356867


No 24 
>>1w96_A ACC, acetyl-coenzyme A carboxylase; ligase, obesity, diabetes, fatty acid metabolism, structure-based drug design; HET: S1A; 1.8A {Saccharomyces cerevisiae} (A:217-282)
Probab=43.37  E-value=19  Score=17.34  Aligned_cols=17  Identities=6%  Similarity=0.235  Sum_probs=7.4

Q ss_pred             CHHHHHHHHHHHCCCEE
Q ss_conf             98999999998389077
Q gi|254780359|r  180 KGKQVIEFSKKYDLKII  196 (210)
Q Consensus       180 ~~~~~~~fA~~~~lp~i  196 (210)
                      +.+++.+|++++++|+|
T Consensus         6 ~~~~~~~~~~~ig~PvV   22 (66)
T 1w96_A            6 SPEDGLQKAKRIGFPVM   22 (66)
T ss_dssp             SHHHHHHHHHHHCSSEE
T ss_pred             CHHHHHHHHHHCCCCEE
T ss_conf             99999999985698789


No 25 
>>3jsz_A LGT1, putative uncharacterized protein; glucosyltransferase, legionnaire'S disease; HET: MSE UPG; 1.70A {Legionella pneumophila} PDB: 2wzg_A* 3jt1_A* 2wzf_A* (A:110-328,A:442-525)
Probab=41.17  E-value=14  Score=18.24  Aligned_cols=12  Identities=8%  Similarity=-0.147  Sum_probs=5.1

Q ss_pred             HHHCCHHHHHHH
Q ss_conf             445999999999
Q gi|254780359|r   43 AIHCTSEKMAFI   54 (210)
Q Consensus        43 Ae~vt~e~i~fm   54 (210)
                      ....+++.++.+
T Consensus        65 St~Ln~~a~~ql   76 (303)
T 3jsz_A           65 SSLLNPEANRQX   76 (303)
T ss_dssp             STTSCHHHHHHH
T ss_pred             HHHCCHHHHHHH
T ss_conf             132388999999


No 26 
>>3iuu_A MLRC-like, putative metallopeptidase; YP_676511.1, structural genomics, joint center for structural genomics, JCSG; HET: PGE; 2.13A {Mesorhizobium SP} (A:276-472)
Probab=40.28  E-value=22  Score=16.92  Aligned_cols=47  Identities=15%  Similarity=0.178  Sum_probs=28.9

Q ss_pred             HHHHHHHHHH-HHCCCEEEEEECCCCCCCCCEEEEHHHCCHHHHHHHHHHCCC
Q ss_conf             5669999999-968982999967789887013348445999999999970899
Q gi|254780359|r    9 ERYIEDVIQS-FQKGEMVIVTDADDRENEADLVLAAIHCTSEKMAFIIRHTCG   60 (210)
Q Consensus         9 ~~~ie~ai~a-l~~G~~Viv~D~~dREnEgDlv~~Ae~vt~e~i~fm~~~~~G   60 (210)
                      +.++++||+. +..++||+|.|..|.-+-|-    +. =++..+..|+++.-.
T Consensus         3 ~~~~~eAi~~A~~~~~PvvlaD~~DNpg~G~----~g-D~T~iL~~lL~~~~~   50 (197)
T 3iuu_A            3 LXSVDKALEIARTSRQLLALGDQGDRVXGAG----PG-DSPEIARVALEHFPG   50 (197)
T ss_dssp             CBCHHHHHHHHHTCSSEEEEEEGGGCGGGTC----CC-CCCHHHHHHHHHCTT
T ss_pred             CCCHHHHHHHHHCCCCCEEECCCCCCCCCCC----CC-CCHHHHHHHHHCCCC
T ss_conf             6434568887523688556256788766675----42-008999999844777


No 27 
>>1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} (A:1-251)
Probab=39.02  E-value=29  Score=16.16  Aligned_cols=70  Identities=17%  Similarity=-0.026  Sum_probs=43.3

Q ss_pred             HHCCCCCCCEEEECC--CCCCCCCCHHHHHHHHHHHCCCCCEEEEEEEE-CCCCCCCCHHHHHHHHHHHCCCEE
Q ss_conf             313898500100126--98246678026776998876996005988853-688750598999999998389077
Q gi|254780359|r  126 NFVRPGHIFPLISRD--GGVLVRPGHTEASVDLCKITGLPPIAVICELV-NDDGTIKKGKQVIEFSKKYDLKII  196 (210)
Q Consensus       126 df~~PGHV~pL~a~~--gGvl~R~GHTEaavdL~~lAGl~P~~vi~Eil-~~~G~~~~~~~~~~fA~~~~lp~i  196 (210)
                      ++..|+++.++....  .++....+.+ -..++.++..-.+..++++.. +..|.+++.+++.++|++|+++++
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~t~~v~~~~~~~~~g~~~dl~~i~~la~~~g~~~i  172 (251)
T 1n8p_A          100 GDVYGGTHRYFTKVANAHGVETSFTND-LLNDLPQLIKENTKLVWIETPTNPTLKVTDIQKVADLIKKHAAGQD  172 (251)
T ss_dssp             SSCCHHHHHHHHHTSTTTCSCCEEESS-HHHHHHHHSCSSEEEEEECSSCTTTCCCCCHHHHHHHHHHHTTTTT
T ss_pred             ECCCCCCHHHHHHHHHCCCEEEEEEEC-CHHHHHHHHCCCCEEEEECCCCCCCCEECCHHHHHHHHHHCCCCCC
T ss_conf             045565213444444117449999835-8689998737786089921689954442334665655431123578


No 28 
>>1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} (A:1-246)
Probab=38.09  E-value=30  Score=16.07  Aligned_cols=42  Identities=12%  Similarity=0.045  Sum_probs=31.2

Q ss_pred             HHHHCCCCCEEEEEEEE-CCCCCCCCHHHHHHHHHHHCCCEEE
Q ss_conf             98876996005988853-6887505989999999983890777
Q gi|254780359|r  156 LCKITGLPPIAVICELV-NDDGTIKKGKQVIEFSKKYDLKIIS  197 (210)
Q Consensus       156 L~~lAGl~P~~vi~Eil-~~~G~~~~~~~~~~fA~~~~lp~i~  197 (210)
                      +.+...-.+-.+++|.+ +..|+..+.+.+.+.|++||++++-
T Consensus       130 i~~~i~~~t~~i~~~~~~~~~g~~~Di~~i~~ia~~~g~~li~  172 (246)
T 1cs1_A          130 LRAALAEKPKLVLVESPSNPLLRVVDIAKICHLAREVGAVSVV  172 (246)
T ss_dssp             HHHHHHTCCSEEEEECSCTTTCCCCCHHHHHHHHHHTTCEEEE
T ss_pred             HHHHCCCCCCEEEEECCCCCCCEECCHHHHHHHHHHCCCEEEE
T ss_conf             8751276662799714565531004579886666524866997


No 29 
>>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, pyridoxal phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum} (A:81-271)
Probab=35.71  E-value=33  Score=15.83  Aligned_cols=31  Identities=10%  Similarity=0.258  Sum_probs=14.8

Q ss_pred             EEEEEEECCCCCCCCHHHHHHHHHHHCCCEE
Q ss_conf             5988853688750598999999998389077
Q gi|254780359|r  166 AVICELVNDDGTIKKGKQVIEFSKKYDLKII  196 (210)
Q Consensus       166 ~vi~Eil~~~G~~~~~~~~~~fA~~~~lp~i  196 (210)
                      .+++..-+..|.....+++.+++++|+++++
T Consensus        97 ~~~~~~~~~~g~~~dl~~i~~~~~~~~~~li  127 (191)
T 3a2b_A           97 ICTDGIFSMEGDIVNLPELTSIANEFDAAVM  127 (191)
T ss_dssp             EEEESBCTTTCCBCCHHHHHHHHHHHTCEEE
T ss_pred             EEECCCCCCCCCCCCHHHHHHHHHHHCEEEE
T ss_conf             8713666898876479999999997294899


No 30 
>>3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} PDB: 3bs8_A* (A:108-293)
Probab=35.58  E-value=33  Score=15.82  Aligned_cols=62  Identities=15%  Similarity=-0.004  Sum_probs=46.1

Q ss_pred             EEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEEEECCCCCCC-----CHHHHHHHHHHHCCCEEE
Q ss_conf             00126982466780267769988769960059888536887505-----989999999983890777
Q gi|254780359|r  136 LISRDGGVLVRPGHTEASVDLCKITGLPPIAVICELVNDDGTIK-----KGKQVIEFSKKYDLKIIS  197 (210)
Q Consensus       136 L~a~~gGvl~R~GHTEaavdL~~lAGl~P~~vi~Eil~~~G~~~-----~~~~~~~fA~~~~lp~i~  197 (210)
                      ..-.+.....+....+..-++.+.-+-..+++|+|-+...|.+.     =...+.+.+++|++++|-
T Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~i~EPiqg~gG~~~~~~~fl~~lr~lc~~~g~llI~  132 (186)
T 3k28_A           66 EGVAKNTITVAYNDLESVKYAFEQFGDDIACVIVEPVAGNXGVVPPQPGFLEGLREVTEQNGALLIF  132 (186)
T ss_dssp             HHHHTTEEEEETTCHHHHHHHHHHHGGGEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEE
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEE
T ss_conf             8757776430122487767899854886438997731378886578989999999999982989998


No 31 
>>1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfuration; HET: PLP; 2.30A {Arabidopsis thaliana} (A:1-326)
Probab=34.02  E-value=35  Score=15.66  Aligned_cols=47  Identities=11%  Similarity=0.066  Sum_probs=35.5

Q ss_pred             HHHHHHHHHCCCCCEEEEEEEEC-CCCCCCCHHHHHHHHHHHCCCEEE
Q ss_conf             67769988769960059888536-887505989999999983890777
Q gi|254780359|r  151 EASVDLCKITGLPPIAVICELVN-DDGTIKKGKQVIEFSKKYDLKIIS  197 (210)
Q Consensus       151 EaavdL~~lAGl~P~~vi~Eil~-~~G~~~~~~~~~~fA~~~~lp~i~  197 (210)
                      .-.-+|...-.-....|+++-++ ..|.....+++.++|++||++++-
T Consensus       205 ~d~~~l~~ai~~~t~lV~~~~~~n~~G~~~di~~i~~~a~~~g~~viv  252 (326)
T 1ibj_A          205 TKLDEVAAAIGPQTKLVWLESPTNPRQQISDIRKISEMAHAQGALVLV  252 (326)
T ss_dssp             TSHHHHHHHCCSSEEEEEECSSCTTTCCCCCHHHHHHHHHTTTCEEEE
T ss_pred             CCHHHHHHCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHCCCCCEEEE
T ss_conf             113566640376714999658898644446668999874226513998


No 32 
>>2jya_A AGR_C_3324P, uncharacterized protein ATU1810; protein with unknown function ATU1810, ontario centre for structural proteomics; NMR {Agrobacterium tumefaciens str} (A:)
Probab=32.35  E-value=35  Score=15.70  Aligned_cols=19  Identities=5%  Similarity=0.209  Sum_probs=14.3

Q ss_pred             CHHHHHHHHHHHCCCEEEH
Q ss_conf             9899999999838907779
Q gi|254780359|r  180 KGKQVIEFSKKYDLKIISV  198 (210)
Q Consensus       180 ~~~~~~~fA~~~~lp~i~i  198 (210)
                      +.++++.||++||+++.-.
T Consensus        60 skE~AIayaek~G~~y~V~   78 (106)
T 2jya_A           60 TQEQAEAYAQRKGIEYRVI   78 (106)
T ss_dssp             SHHHHHHHHHHHTCEEEEC
T ss_pred             CHHHHHHHHHHCCCEEEEE
T ss_conf             9999999999879659998


No 33 
>>2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} (A:64-329)
Probab=32.22  E-value=38  Score=15.48  Aligned_cols=36  Identities=8%  Similarity=0.030  Sum_probs=29.6

Q ss_pred             CCCEEEEEEEECCCCCCCCHHHHHHHHHHHCCCEEE
Q ss_conf             960059888536887505989999999983890777
Q gi|254780359|r  162 LPPIAVICELVNDDGTIKKGKQVIEFSKKYDLKIIS  197 (210)
Q Consensus       162 l~P~~vi~Eil~~~G~~~~~~~~~~fA~~~~lp~i~  197 (210)
                      -....+++-..+..|...+.+++.+.+++||++++.
T Consensus       138 ~~t~~~i~~~~~~~G~~~~l~~I~~la~~~g~~v~~  173 (266)
T 2a7v_A          138 LFRPRLIIAGTSAYARLIDYARMREVCDEVKAHLLA  173 (266)
T ss_dssp             HHCCSEEEECCSSCCSCCCHHHHHHHHHHTTCEEEE
T ss_pred             HHCCCEEEECCCCCCCCCCHHHHHHHHHCCCCEEEE
T ss_conf             407765884320033446689999887404761882


No 34 
>>2vpq_A Acetyl-COA carboxylase; bacteria, ATP-grAsp domain, biotin carboxylase, ligase; HET: ANP; 2.1A {Staphylococcus aureus} (A:133-202)
Probab=32.16  E-value=38  Score=15.47  Aligned_cols=16  Identities=13%  Similarity=0.181  Sum_probs=6.0

Q ss_pred             CHHHHHHHHHHHCCCE
Q ss_conf             9899999999838907
Q gi|254780359|r  180 KGKQVIEFSKKYDLKI  195 (210)
Q Consensus       180 ~~~~~~~fA~~~~lp~  195 (210)
                      +.+++.+|+++.|+|+
T Consensus         7 s~ee~~~~~~~iG~Pv   22 (70)
T 2vpq_A            7 DVSEAKKIAKKIGYPV   22 (70)
T ss_dssp             CHHHHHHHHHHHCSSE
T ss_pred             CHHHHHHHHHHCCCCE
T ss_conf             9999999999739958


No 35 
>>2uvp_A HOBA; hypothetical protein, unknown function, DNAA, SIS fold, DNA replication; 1.7A {Helicobacter pylori} PDB: 2uvp_B (A:34-186)
Probab=31.09  E-value=38  Score=15.47  Aligned_cols=25  Identities=20%  Similarity=0.322  Sum_probs=21.7

Q ss_pred             HHHHHHHHHHCCCEEEEEECCCCCC
Q ss_conf             6999999996898299996778988
Q gi|254780359|r   11 YIEDVIQSFQKGEMVIVTDADDREN   35 (210)
Q Consensus        11 ~ie~ai~al~~G~~Viv~D~~dREn   35 (210)
                      -+..+|+.+-+|+-+||.-|++||=
T Consensus         9 L~a~~l~~ll~G~s~iviTD~~R~W   33 (153)
T 2uvp_A            9 LIAQTISHVLNGGSLLVSADSSRHW   33 (153)
T ss_dssp             HHHHHHHHHHTTCEEEEEECGGGHH
T ss_pred             HHHHHHHHHHCCCEEEEEECCCHHH
T ss_conf             9999999985797699996871778


No 36 
>>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural genomics, protein structure initiative, PSI; 1.75A {Escherichia coli O157} (A:189-210,A:255-260,A:317-351)
Probab=30.38  E-value=6.5  Score=20.29  Aligned_cols=26  Identities=19%  Similarity=0.031  Sum_probs=22.4

Q ss_pred             HHHHHHHHHHHHHHCCHHHHCCCCCC
Q ss_conf             89999999998420132431389850
Q gi|254780359|r  108 DDRAYTIKNLANPHSIADNFVRPGHI  133 (210)
Q Consensus       108 ~DRa~TIr~la~~~~~~~df~~PGHV  133 (210)
                      .+|..|+|+++....+|++|.-+|-.
T Consensus        27 ~~R~LTvRE~aRLQGFPDdf~f~gs~   52 (63)
T 3g7u_A           27 LHRVITPREAARLQGFPDWFRFHVTK   52 (63)
T ss_dssp             CCSBCCHHHHHHHHTCCTTCCCCSSH
T ss_pred             CCCCCCHHHHHHHCCCCCCCEECCCH
T ss_conf             54588899999978799996869798


No 37 
>>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} (A:689-756)
Probab=29.23  E-value=41  Score=15.23  Aligned_cols=15  Identities=13%  Similarity=0.142  Sum_probs=5.7

Q ss_pred             HHHHHHHHHHHCCCE
Q ss_conf             899999999838907
Q gi|254780359|r  181 GKQVIEFSKKYDLKI  195 (210)
Q Consensus       181 ~~~~~~fA~~~~lp~  195 (210)
                      .+++.+|++++|+|+
T Consensus        10 ~~e~~~~~~~~g~Pv   24 (68)
T 1a9x_A           10 IEMAVEKAKEIGYPL   24 (68)
T ss_dssp             HHHHHHHHHHHCSSE
T ss_pred             CHHHHHHHHHCCCCE
T ss_conf             047789998659766


No 38 
>>3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; X-RAY, aspartate aminotransferase, colitose, perosamine, O- antigen, PLP; HET: G4M; 1.70A {Escherichia coli O55} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A* (A:)
Probab=28.67  E-value=43  Score=15.10  Aligned_cols=61  Identities=7%  Similarity=0.033  Sum_probs=44.1

Q ss_pred             HHHHHHHHHHHHCCCEEEEEECC----------------CCCCCCCEEEEHHHCCHHHHHHHHHHCCCCEEEECCHH
Q ss_conf             56699999999689829999677----------------89887013348445999999999970899458614689
Q gi|254780359|r    9 ERYIEDVIQSFQKGEMVIVTDAD----------------DRENEADLVLAAIHCTSEKMAFIIRHTCGIVCTPMPFH   69 (210)
Q Consensus         9 ~~~ie~ai~al~~G~~Viv~D~~----------------dREnEgDlv~~Ae~vt~e~i~fm~~~~~Glic~al~~~   69 (210)
                      ...+++.|..+-..+.++++.+.                ..-+.||-|+-....-+..+..+...+.-.+.++.+.+
T Consensus        36 ~~~l~~~ia~~~g~~~~v~~~sgt~a~~~a~~al~~~~~~~~~~Gd~Vi~~~~~~~~~~~~~~~~g~~~v~~~~~~~  112 (390)
T 3b8x_A           36 VKQYETQFAKTFGSKYAVMVSSGSTANLLMIAALFFTKKPRLKKGDEIIVPAVSWSTTYYPLQQYGLRVKFVDIDIN  112 (390)
T ss_dssp             HHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHTTSSSSCSCCTTCEEEEESSSCHHHHHHHHHTTCEEEEECBCTT
T ss_pred             HHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHCCCCCCCCCCCCC
T ss_conf             99999999999785927998477999999999986557508899973102023342402334403432221344555


No 39 
>>2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A* (A:39-271)
Probab=28.11  E-value=44  Score=15.04  Aligned_cols=25  Identities=20%  Similarity=0.232  Sum_probs=9.6

Q ss_pred             ECCCCCCCCHHHHHHHHHHHCCCEE
Q ss_conf             3688750598999999998389077
Q gi|254780359|r  172 VNDDGTIKKGKQVIEFSKKYDLKII  196 (210)
Q Consensus       172 l~~~G~~~~~~~~~~fA~~~~lp~i  196 (210)
                      .+..|+.++.+++.+++++||++++
T Consensus       120 ~~~~g~~~~~~~i~~~a~~~~~~ii  144 (233)
T 2oga_A          120 VHLYGHPADMDALRELADRHGLHIV  144 (233)
T ss_dssp             BCGGGCCCCHHHHHHHHHHHTCEEC
T ss_pred             EECCCCCCCHHHHHHHHHHCCCEEE
T ss_conf             6358864524478887776096035


No 40 
>>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structural genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* (A:1-137,A:202-246)
Probab=28.10  E-value=44  Score=15.04  Aligned_cols=33  Identities=15%  Similarity=0.342  Sum_probs=17.0

Q ss_pred             EECCCCCCCCHHHHHHHHHHHCCCEEEHHHHHHH
Q ss_conf             5368875059899999999838907779999999
Q gi|254780359|r  171 LVNDDGTIKKGKQVIEFSKKYDLKIISVQDLIAW  204 (210)
Q Consensus       171 il~~~G~~~~~~~~~~fA~~~~lp~i~i~dli~y  204 (210)
                      ++...|. -+...+..+|++++++.|+..||++-
T Consensus        32 IiGpPGS-GKsT~a~~La~~ygl~hIs~gdllR~   64 (182)
T 2bbw_A           32 ILGPPGS-GKGTVCQRIAQNFGLQHLSSGHFLRE   64 (182)
T ss_dssp             EECCTTS-SHHHHHHHHHHHHCCCCEEHHHHHHH
T ss_pred             EECCCCC-CHHHHHHHHHHHHCCEEECHHHHHHH
T ss_conf             9899999-87999999999879888748999999


No 41 
>>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} (A:1-119)
Probab=27.77  E-value=35  Score=15.67  Aligned_cols=65  Identities=20%  Similarity=0.283  Sum_probs=50.4

Q ss_pred             CCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHCCCEEE
Q ss_conf             3898500100126982466780267769988769960059888536887505989999999983890777
Q gi|254780359|r  128 VRPGHIFPLISRDGGVLVRPGHTEASVDLCKITGLPPIAVICELVNDDGTIKKGKQVIEFSKKYDLKIIS  197 (210)
Q Consensus       128 ~~PGHV~pL~a~~gGvl~R~GHTEaavdL~~lAGl~P~~vi~Eil~~~G~~~~~~~~~~fA~~~~lp~i~  197 (210)
                      ..|..|..+-..+-..+.+-+..+..-.|-++....|.++|.-     -+...-+++.++|++|++|++.
T Consensus        48 ~~p~RIQilG~~E~~Yl~~l~~e~r~~~l~~l~~~~~P~iIvt-----~~~~~p~~l~~~a~~~~iPll~  112 (119)
T 1knx_A           48 SQIGSVAILGKREFGFLSQKTLVEQQQILHNLLKLNPPAIILT-----KSFTDPTVLLQVNQTYQVPILK  112 (119)
T ss_dssp             SCCCBCEEECHHHHHHHTTSCHHHHTTTHHHHHTTCCSCEEEE-----TTTCCCHHHHHHGGGTCCCEEE
T ss_pred             CCCCEEEEECHHHHHHHHHCCHHHHHHHHHHHHCCCCCEEEEE-----CCCCCCHHHHHHHHHCCCEEEE
T ss_conf             6988799987899999982999999999999838899889998-----9599999999999983953998


No 42 
>>3hvy_A Cystathionine beta-lyase family protein, YNBB B.subtilis ortholog; NP_348457.1; HET: LLP MSE; 2.00A {Clostridium acetobutylicum} (A:66-280)
Probab=27.56  E-value=45  Score=14.98  Aligned_cols=43  Identities=7%  Similarity=-0.069  Sum_probs=29.3

Q ss_pred             HHHHHCCCCCEEEEEEEE-C----CCCCCCCHHHHHHHHHHHCCCEEE
Q ss_conf             998876996005988853-6----887505989999999983890777
Q gi|254780359|r  155 DLCKITGLPPIAVICELV-N----DDGTIKKGKQVIEFSKKYDLKIIS  197 (210)
Q Consensus       155 dL~~lAGl~P~~vi~Eil-~----~~G~~~~~~~~~~fA~~~~lp~i~  197 (210)
                      .+...-.-.+..++.+.. +    ..|+....+++.++|++||++++-
T Consensus       103 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~i~~~a~~~g~~li~  150 (215)
T 3hvy_A          103 KEELKKDDSIKLIHIQRSTGYGWRKSLRIAEIAEIIKSIREVNENVIV  150 (215)
T ss_dssp             HHHHHHCTTEEEEEEESSCCSSSSCCCCHHHHHHHHHHHHHHCSSSEE
T ss_pred             HHHHCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEE
T ss_conf             986165677499995788877778637799999999999985689889


No 43 
>>1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-amino-7-ketopelargonate synthase; 1.65A {Escherichia coli} (A:77-263)
Probab=27.55  E-value=45  Score=14.98  Aligned_cols=30  Identities=10%  Similarity=0.103  Sum_probs=14.8

Q ss_pred             EEEEEECCCCCCCCHHHHHHHHHHHCCCEE
Q ss_conf             988853688750598999999998389077
Q gi|254780359|r  167 VICELVNDDGTIKKGKQVIEFSKKYDLKII  196 (210)
Q Consensus       167 vi~Eil~~~G~~~~~~~~~~fA~~~~lp~i  196 (210)
                      +++-.-+..|.++..+++.+++++|+++++
T Consensus        97 ~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~  126 (187)
T 1bs0_A           97 VTEGVFSMDGDSAPLAEIQQVTQQHNGWLM  126 (187)
T ss_dssp             EEESBCTTTCCBCCHHHHHHHHHHTTCEEE
T ss_pred             EECCCCCCCCCCHHHHHHHHHHHHCCCEEE
T ss_conf             952777888772114779999885490997


No 44 
>>3gmt_A Adenylate kinase; ssgcid, ATP- binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B} (A:1-119,A:201-230)
Probab=27.38  E-value=46  Score=14.96  Aligned_cols=32  Identities=28%  Similarity=0.422  Sum_probs=15.1

Q ss_pred             EECCCCCCCCHHHHHHHHHHHCCCEEEHHHHHH
Q ss_conf             536887505989999999983890777999999
Q gi|254780359|r  171 LVNDDGTIKKGKQVIEFSKKYDLKIISVQDLIA  203 (210)
Q Consensus       171 il~~~G~~~~~~~~~~fA~~~~lp~i~i~dli~  203 (210)
                      |+...|. -+...+..+|++++++.|+..|+++
T Consensus        13 I~GpPGS-GKsT~a~~La~~~gl~hIs~gdlir   44 (149)
T 3gmt_A           13 LLGAPGA-GKGTQANFIKEKFGIPQISTGDXLR   44 (149)
T ss_dssp             EECCTTS-CHHHHHHHHHHHHTCCEECHHHHHH
T ss_pred             EECCCCC-CHHHHHHHHHHHHCCEEECHHHHHH
T ss_conf             9899999-8799999999987995774999999


No 45 
>>2a8j_A Taspase 1, threonine aspartase 1; MLL, glycosylspraginase, asparaginase, hydrolase; 1.90A {Homo sapiens} PDB: 2a8i_A 2a8m_A 2a8l_A (A:)
Probab=27.36  E-value=27  Score=16.39  Aligned_cols=27  Identities=4%  Similarity=0.031  Sum_probs=18.9

Q ss_pred             CCCCHHHHHHHHHHHCCCEEEHHHHHH
Q ss_conf             505989999999983890777999999
Q gi|254780359|r  177 TIKKGKQVIEFSKKYDLKIISVQDLIA  203 (210)
Q Consensus       177 ~~~~~~~~~~fA~~~~lp~i~i~dli~  203 (210)
                      .++-++.+.+||+++|++++.-+.++.
T Consensus       163 ~~LvGegA~~fA~~~G~~~~~~~~l~t  189 (420)
T 2a8j_A          163 CFLVGEGAYRWAVDHGIPSCPPNIMTT  189 (420)
T ss_dssp             SEEEHHHHHHHHHHTTCCBCC------
T ss_pred             EEEECHHHHHHHHHHCCCCCCCCCCCC
T ss_conf             699756589999970986204434478


No 46 
>>2wqd_A Phosphoenolpyruvate-protein phosphotransferase; kinase, cytoplasm, transport, magnesium, PEP- utilising enzyme, phosphotransferase system; 2.40A {Staphylococcus aureus} PDB: 2hro_A (A:1-30,A:151-260)
Probab=27.01  E-value=19  Score=17.28  Aligned_cols=79  Identities=14%  Similarity=0.084  Sum_probs=51.4

Q ss_pred             CCEEEEHHHCCHHHHHHHH-HHCCCCEEEE-----CCHHHHHHHHCCCCCCCCCC--CCCCCEEEEEECCCCC-CCCCCH
Q ss_conf             0133484459999999999-7089945861-----46899987403643244566--5665217887203477-789998
Q gi|254780359|r   37 ADLVLAAIHCTSEKMAFII-RHTCGIVCTP-----MPFHTAHKLKLNPMVLENES--VHKTAFTVSVDSKHGI-TTGISA  107 (210)
Q Consensus        37 gDlv~~Ae~vt~e~i~fm~-~~~~Glic~a-----l~~~~~~~L~Lp~m~~~n~~--~~~taFtvsvd~~~g~-tTGISa  107 (210)
                      -+.|+-++-++|..+..|. .+..|+++-.     =..-.|+.+|+|.++.-...  .-...-.+.||...|. ..+=+.
T Consensus        36 e~~ILVa~el~Ps~~~~l~~~~v~GiVt~~GG~tSHaAIlARslGIPaivG~~~~~~~i~~G~~ViiDg~~G~V~i~P~~  115 (140)
T 2wqd_A           36 ESVVIVGNDLTPSDTAQLNKEFVQGFATNIGGRTSASAIMSRSLEIPAIVGTKSITQEVKQGDMIIVDGLNGDVIVNPTE  115 (140)
T ss_dssp             CCEEEEESCCCHHHHTTCCTTTEEEEEESSCCTTSHHHHHHHHTTCCEEECCSSHHHHCCTTCEEEEETTTTEEEESCCH
T ss_pred             CCEEEEECCCCCHHHHCCCCCCEEEEEEEECCCCCHHHHHHHHCCCCEEEECCCCHHHHCCCCEEEEECCCCEEEEECCC
T ss_conf             97699951488044311452103689997057634399999983998497136302231489789984688469973450


Q ss_pred             HHHHHHHH
Q ss_conf             89999999
Q gi|254780359|r  108 DDRAYTIK  115 (210)
Q Consensus       108 ~DRa~TIr  115 (210)
                      ..++.--+
T Consensus       116 ~~i~~y~~  123 (140)
T 2wqd_A          116 DELIAYQD  123 (140)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
T ss_conf             25655468


No 47 
>>2gez_A L-asparaginase alpha subunit; isoaspartyl aminopeptidase, NTN-hydrolase, autoproteolysis, taspase, sodium binding; 2.60A {Lupinus luteus} (A:74-142)
Probab=26.91  E-value=28  Score=16.28  Aligned_cols=24  Identities=8%  Similarity=0.106  Sum_probs=19.1

Q ss_pred             CCCCCCCHHHHHHHHHHHCCCEEE
Q ss_conf             887505989999999983890777
Q gi|254780359|r  174 DDGTIKKGKQVIEFSKKYDLKIIS  197 (210)
Q Consensus       174 ~~G~~~~~~~~~~fA~~~~lp~i~  197 (210)
                      .+-.++-++.+.+||+++|+++++
T Consensus        46 ~~h~~LvG~gA~~fA~~~G~~~~d   69 (69)
T 2gez_A           46 TPHIYLAFQGAQDFAKQQGVETVD   69 (69)
T ss_dssp             SSCSEEEHHHHHHHHHHHTCCBCC
T ss_pred             CCCEEEECHHHHHHHHHCCCCCCC
T ss_conf             742166647899999984997368


No 48 
>>3c19_A Uncharacterized protein MK0293; protein structure initiative, PSI-2, NEW YORK SGX research center for structural genomics, nysgxrc; 2.50A {Methanopyrus kandleri AV19} (A:1-10,A:96-186)
Probab=26.68  E-value=40  Score=15.34  Aligned_cols=29  Identities=10%  Similarity=0.085  Sum_probs=22.0

Q ss_pred             CCHHHHHHHHHHHCCCEEEHHHHHH--HHHH
Q ss_conf             5989999999983890777999999--9984
Q gi|254780359|r  179 KKGKQVIEFSKKYDLKIISVQDLIA--WRKK  207 (210)
Q Consensus       179 ~~~~~~~~fA~~~~lp~i~i~dli~--yr~~  207 (210)
                      .-.+++.+.|+++|+|+-.+.+.+.  |+++
T Consensus        50 PEyED~k~iA~~~gipl~eV~~~i~~~~~e~   80 (101)
T 3c19_A           50 AEFDECREIGEETGIPPREVKAMVEAAARVG   80 (101)
T ss_dssp             ECHHHHHHHHHHHCSCHHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
T ss_conf             1899999999997939999999999998863


No 49 
>>1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas putida} (A:1-259)
Probab=26.39  E-value=48  Score=14.85  Aligned_cols=51  Identities=8%  Similarity=-0.066  Sum_probs=35.0

Q ss_pred             CCHHHHHHHHHHHCCCCCEEEEEEEEC--CCCCCCC---HHHHHHHHHHHCCCEEE
Q ss_conf             780267769988769960059888536--8875059---89999999983890777
Q gi|254780359|r  147 PGHTEASVDLCKITGLPPIAVICELVN--DDGTIKK---GKQVIEFSKKYDLKIIS  197 (210)
Q Consensus       147 ~GHTEaavdL~~lAGl~P~~vi~Eil~--~~G~~~~---~~~~~~fA~~~~lp~i~  197 (210)
                      ..+-|..++-...++..|..++.++.-  ..|....   .+++.+++++|+++++.
T Consensus       123 ~~~le~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~i~~ia~~~g~~liv  178 (259)
T 1v72_A          123 IVRLRERTREKVGDVHTTQPACVSITQATEVGSIYTLDEIEAIGDVCKSSSLGLHM  178 (259)
T ss_dssp             HHHHHHHTTSSTTCTTSCEEEEEEEESSCTTSCCCCHHHHHHHHHHHHHTTCEEEE
T ss_pred             HHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf             77753232012323345441343111221123214478765456677765477764


No 50 
>>1y88_A Hypothetical protein AF1548; APC5567, structural genomics, protein structure initiative, PSI; 1.85A {Archaeoglobus fulgidus} (A:1-144)
Probab=26.29  E-value=40  Score=15.31  Aligned_cols=18  Identities=11%  Similarity=0.211  Sum_probs=8.7

Q ss_pred             CCCHHHHHHHHHHHCCCC
Q ss_conf             678026776998876996
Q gi|254780359|r  146 RPGHTEASVDLCKITGLP  163 (210)
Q Consensus       146 R~GHTEaavdL~~lAGl~  163 (210)
                      ..|.|+.+.+.++-.+..
T Consensus       102 ~~~ft~~A~~~a~~~~i~  119 (144)
T 1y88_A          102 NTKFSEEAKKYAGCVGIK  119 (144)
T ss_dssp             SSEECHHHHHHHHHHTCE
T ss_pred             CCCCCHHHHHHHHHCCCE
T ss_conf             896799999999975978


No 51 
>>2cob_A LCOR protein; MLR2, KIAA1795, helix-turn-helix, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:)
Probab=25.87  E-value=49  Score=14.79  Aligned_cols=21  Identities=19%  Similarity=0.423  Sum_probs=16.3

Q ss_pred             CCCCCHHHHHHHHHHHHCCCE
Q ss_conf             757795669999999968982
Q gi|254780359|r    4 KKSLDERYIEDVIQSFQKGEM   24 (210)
Q Consensus         4 ~~~~~~~~ie~ai~al~~G~~   24 (210)
                      ..+..+..+++||+++++|++
T Consensus        11 ~~~yt~e~l~~Ai~aV~~g~m   31 (70)
T 2cob_A           11 YRQYNSEILEEAISVVMSGKM   31 (70)
T ss_dssp             SCCCCHHHHHHHHHHHHTTSS
T ss_pred             CCCCCHHHHHHHHHHHHHCCE
T ss_conf             233688899999999983541


No 52 
>>2w7t_A CTP synthetase, putative cytidine triphosphate synthase; glutaminase domain, trypsanosoma brucei, ligase, acivicin; HET: 5CS; 2.10A {Trypanosoma brucei} (A:1-129,A:223-273)
Probab=25.63  E-value=36  Score=15.63  Aligned_cols=40  Identities=5%  Similarity=-0.038  Sum_probs=21.2

Q ss_pred             HHCCCCCEEEEEEEEC-CCCCCCCHHHHHHHHHHHCCCEEE
Q ss_conf             8769960059888536-887505989999999983890777
Q gi|254780359|r  158 KITGLPPIAVICELVN-DDGTIKKGKQVIEFSKKYDLKIIS  197 (210)
Q Consensus       158 ~lAGl~P~~vi~Eil~-~~G~~~~~~~~~~fA~~~~lp~i~  197 (210)
                      ...|+.|+.+++-.=+ ..|..-...++.+||++|++|+.-
T Consensus        61 ~~~~l~~~~vV~v~Gttg~ggiD~~~~i~~~are~~ip~hg  101 (180)
T 2w7t_A           61 ARKALLGCDGIFVPGGFGNRGVDGKCAAAQVARMNNIPYFG  101 (180)
T ss_dssp             HHHHHHTCSEEEECCCCTTTTHHHHHHHHHHHHHHTCCEEE
T ss_pred             HHHHHCCCCCEEECCCCCCCCCHHHHHHHHHHHHCCCCHHH
T ss_conf             99874367745737847878706899999999973886034


No 53 
>>3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis} (A:55-296)
Probab=25.59  E-value=49  Score=14.75  Aligned_cols=90  Identities=11%  Similarity=-0.007  Sum_probs=48.0

Q ss_pred             HHHHHHHHHHHHHH--CCHHHHCCCCCCCEEEE---CCCCCCCC----CCHH-HHHHH-HHHHCCCCCEEEEEEEECCCC
Q ss_conf             89999999998420--13243138985001001---26982466----7802-67769-988769960059888536887
Q gi|254780359|r  108 DDRAYTIKNLANPH--SIADNFVRPGHIFPLIS---RDGGVLVR----PGHT-EASVD-LCKITGLPPIAVICELVNDDG  176 (210)
Q Consensus       108 ~DRa~TIr~la~~~--~~~~df~~PGHV~pL~a---~~gGvl~R----~GHT-Eaavd-L~~lAGl~P~~vi~Eil~~~G  176 (210)
                      ..-...+..+..+.  ..-.++..|.+..++..   ...+....    .+.+ +..++ +-+..+-....|+.-..+..|
T Consensus        64 ~a~~~~~~a~~~~g~~vi~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~v~~~~~~~~G  143 (242)
T 3h7f_A           64 QANAAVLHALMSPGERLLGLDLANGGHLTHGMRLNFSGKLYENGFYGVDPATHLIDMDAVRATALEFRPKVIIAGWSAYP  143 (242)
T ss_dssp             HHHHHHHHHHCCTTCEEEEECGGGTCCGGGTCTTSHHHHSSEEEEECCCTTTCSCCHHHHHHHHHHHCCSEEEEECSSCC
T ss_pred             HHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCE
T ss_conf             78999999862889701233046677445555445555532134456660343310468999976336756986564532


Q ss_pred             CCCCHHHHHHHHHHHCCCEEE
Q ss_conf             505989999999983890777
Q gi|254780359|r  177 TIKKGKQVIEFSKKYDLKIIS  197 (210)
Q Consensus       177 ~~~~~~~~~~fA~~~~lp~i~  197 (210)
                      ...+.+++.+++++||++++.
T Consensus       144 ~~~~l~~i~~la~~~g~~~iv  164 (242)
T 3h7f_A          144 RVLDFAAFRSIADEVGAKLLV  164 (242)
T ss_dssp             SCCCHHHHHHHHHHHTCEEEE
T ss_pred             ECCCHHHHHHHHHHCCCEEEC
T ss_conf             025689999987630415862


No 54 
>>3hqs_A CAI-1 autoinducer synthase; quorum sensing, CQSA, PLP, virulence, acyltransferase, aminotransferase, pyridoxal phosphate, transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A (A:)
Probab=25.42  E-value=50  Score=14.74  Aligned_cols=55  Identities=15%  Similarity=0.143  Sum_probs=41.1

Q ss_pred             CCCCCCHHHHHHHHHHHCCCCCEEEEEEEE-CCCCCCCCHHHHHHHHHHHCCCEEE
Q ss_conf             246678026776998876996005988853-6887505989999999983890777
Q gi|254780359|r  143 VLVRPGHTEASVDLCKITGLPPIAVICELV-NDDGTIKKGKQVIEFSKKYDLKIIS  197 (210)
Q Consensus       143 vl~R~GHTEaavdL~~lAGl~P~~vi~Eil-~~~G~~~~~~~~~~fA~~~~lp~i~  197 (210)
                      -..+..|....-.+..+..-...+++.|-+ +..|.....+++.+.+++||+.++-
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~v~~~~G~~~~l~~i~~l~~~~g~~li~  221 (409)
T 3hqs_A          166 QAHPFMHNNCDHLRMLIQRHGPGIIVVDSIYSTLGTIAPLAELVNISKEFGCALLV  221 (409)
T ss_dssp             EEEEECTTCHHHHHHHHHHHCSCEEEEESBCTTTCCBCCHHHHHHHHHHHTCEEEE
T ss_pred             CCEEECCCCHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCH
T ss_conf             32145578899998755325772598535545541011235666799984700020


No 55 
>>1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} (A:54-319)
Probab=25.06  E-value=50  Score=14.69  Aligned_cols=39  Identities=5%  Similarity=-0.112  Sum_probs=32.5

Q ss_pred             HHCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHCCCEE
Q ss_conf             876996005988853688750598999999998389077
Q gi|254780359|r  158 KITGLPPIAVICELVNDDGTIKKGKQVIEFSKKYDLKII  196 (210)
Q Consensus       158 ~lAGl~P~~vi~Eil~~~G~~~~~~~~~~fA~~~~lp~i  196 (210)
                      +...-...++++-..+..|...+.+++.+.+++||++++
T Consensus       134 ~~~~~~~~~v~~~~~~~~G~~~~i~~i~~l~~~~g~~~~  172 (266)
T 1rv3_A          134 ENARLFHPKLIIAGTSCYSRNLDYGRLRKIADENGAYLM  172 (266)
T ss_dssp             HHHHHHCCSEEEECCSSCCSCCCHHHHHHHHHHTTCEEE
T ss_pred             HHHHHHCCCEEEECHHHCCCCCCHHHHHHHHHHCCCEEE
T ss_conf             998740665488313441254677999887864497597


No 56 
>>1k2x_A Putative L-asparaginase; NTN hydrolase, asparginase, autoproteolysis; HET: CME; 1.65A {Escherichia coli} (A:72-139)
Probab=24.37  E-value=27  Score=16.37  Aligned_cols=23  Identities=13%  Similarity=0.170  Sum_probs=18.7

Q ss_pred             CCCCCCHHHHHHHHHHHCCCEEE
Q ss_conf             87505989999999983890777
Q gi|254780359|r  175 DGTIKKGKQVIEFSKKYDLKIIS  197 (210)
Q Consensus       175 ~G~~~~~~~~~~fA~~~~lp~i~  197 (210)
                      +-.++-++.+.+||+++|+|..+
T Consensus        46 ~h~~L~G~gA~~fA~~~G~~~~~   68 (68)
T 1k2x_A           46 PHVMMIGEGAENFAFARGMERVS   68 (68)
T ss_dssp             SCSEEEHHHHHHHHHTTTCCCCC
T ss_pred             CCEEEECHHHHHHHHHCCCCCCC
T ss_conf             98477537799999984996379


No 57 
>>1uc8_A LYSX, lysine biosynthesis enzyme; alpha-aminoadipate pathway, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.00A {Thermus thermophilus} (A:103-174)
Probab=23.94  E-value=53  Score=14.56  Aligned_cols=15  Identities=0%  Similarity=0.319  Sum_probs=5.6

Q ss_pred             HHHHHHHHHHHCCCE
Q ss_conf             899999999838907
Q gi|254780359|r  181 GKQVIEFSKKYDLKI  195 (210)
Q Consensus       181 ~~~~~~fA~~~~lp~  195 (210)
                      .+++.+||++.|+|+
T Consensus        10 ~eea~~~a~~iGyPV   24 (72)
T 1uc8_A           10 REEALRLMEAFGYPV   24 (72)
T ss_dssp             HHHHHHHHHHHCSSE
T ss_pred             HHHHHHHHHHHCCCE
T ss_conf             167788776421100


No 58 
>>1m22_A Peptide amidase, PAM; eleven-stranded beta sheet, covered double layers of alpha helices on TOP and bottom, hydrolase; HET: EPE; 1.40A {Stenotrophomonas maltophilia} (A:316-398)
Probab=23.71  E-value=54  Score=14.53  Aligned_cols=27  Identities=19%  Similarity=0.272  Sum_probs=21.7

Q ss_pred             HHHHHHHHHHCCCEEEHHHHHHHHHHC
Q ss_conf             999999998389077799999999843
Q gi|254780359|r  182 KQVIEFSKKYDLKIISVQDLIAWRKKK  208 (210)
Q Consensus       182 ~~~~~fA~~~~lp~i~i~dli~yr~~~  208 (210)
                      .++..|-..+.-|+-|.+|||+|-+++
T Consensus        17 ~~Ln~YL~~~~~pvrSLadlIaFN~~h   43 (83)
T 1m22_A           17 AGLERYFNTHRAPLRSLADLIAFNQAH   43 (83)
T ss_dssp             HHHHHHHHHTTCSCCSHHHHHHHHHHT
T ss_pred             HHHHHHHHHCCCCCCHHHHHHHHHHHH
T ss_conf             989999875134320067888888753


No 59 
>>1zym_A Enzyme I; phosphotransferase; 2.50A {Escherichia coli} (A:1-27,A:149-258)
Probab=22.37  E-value=51  Score=14.66  Aligned_cols=77  Identities=16%  Similarity=0.131  Sum_probs=49.6

Q ss_pred             CCCEEEEHHHCCHHHHHHHH-HHCCCCEEE-----ECCHHHHHHHHCCCCCCCCC--CCCCCCEEEEEECCCCC-CCCCC
Q ss_conf             70133484459999999999-708994586-----14689998740364324456--65665217887203477-78999
Q gi|254780359|r   36 EADLVLAAIHCTSEKMAFII-RHTCGIVCT-----PMPFHTAHKLKLNPMVLENE--SVHKTAFTVSVDSKHGI-TTGIS  106 (210)
Q Consensus        36 EgDlv~~Ae~vt~e~i~fm~-~~~~Glic~-----al~~~~~~~L~Lp~m~~~n~--~~~~taFtvsvd~~~g~-tTGIS  106 (210)
                      +-.-|+-++.+||..+..|- +...|+++-     +=..-.|+.|++|.++.-..  +.....-.+.||...|. ..+=+
T Consensus        32 ~e~~ILVa~~l~Ps~~~~l~~~~i~GiVt~~GG~tSHaAIlARslgIPavvG~~~~~~~i~~g~~ViIDg~~G~V~i~P~  111 (137)
T 1zym_A           32 QDEVILVAADLTPSETAQLNLKKVLGFITDAGGRTSHTSIMARSLELPAIVGTGSVTSQVKNDDYLILDAVNNQVYVNPT  111 (137)
T ss_dssp             CSCEEEECSCCCHHHHHHSCGGGEEEEECSCCCSSSHHHHHHHHHTCCEECCCSCHHHHCCTTCEEEECCSSCCEEESCC
T ss_pred             CCCEEEEEECCCCHHHHHHHHHHEEEEEEECCCCCCHHHHHHHHCCCCEEEECCHHHHHCCCCCEEEEECCCCEEEECCC
T ss_conf             99869998278605666654302048997169987659999997399679971045640779999999899987998999


Q ss_pred             HHHHHH
Q ss_conf             889999
Q gi|254780359|r  107 ADDRAY  112 (210)
Q Consensus       107 a~DRa~  112 (210)
                      ...+..
T Consensus       112 ~~~~~~  117 (137)
T 1zym_A          112 NEVIDK  117 (137)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
T ss_conf             999999


No 60 
>>3e6g_A Xometc, cystathionine gamma-lyase-like protein; bacterial blight, cystathionine lyase, reverse transsulfuration pathway; 2.80A {Xanthomonas oryzae PV} (A:1-262)
Probab=22.17  E-value=57  Score=14.34  Aligned_cols=33  Identities=15%  Similarity=0.013  Sum_probs=25.4

Q ss_pred             EEEEEE-EECCCCCCCCHHHHHHHHHHHCCCEEE
Q ss_conf             059888-536887505989999999983890777
Q gi|254780359|r  165 IAVICE-LVNDDGTIKKGKQVIEFSKKYDLKIIS  197 (210)
Q Consensus       165 ~~vi~E-il~~~G~~~~~~~~~~fA~~~~lp~i~  197 (210)
                      -.|++. .-+..|...+.+++.++|++|+++++.
T Consensus       154 k~v~i~~p~n~~G~v~dl~~i~~~a~~~g~~~i~  187 (262)
T 3e6g_A          154 KMVWIETPTNPMLKLVDIAAIAVIARKHGLLTVV  187 (262)
T ss_dssp             EEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEE
T ss_pred             EEEEEECCCCCCEEECCCHHHHHHHHHCCCEEEE
T ss_conf             5999956753340332608899988636971786


No 61 
>>1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'- phosphate, hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} (A:63-272)
Probab=22.09  E-value=58  Score=14.33  Aligned_cols=43  Identities=16%  Similarity=0.161  Sum_probs=30.6

Q ss_pred             HHHHHCCCCCEEEEEEEEC-CCCCCCCHHHHHHHHHHHCCCEEE
Q ss_conf             9988769960059888536-887505989999999983890777
Q gi|254780359|r  155 DLCKITGLPPIAVICELVN-DDGTIKKGKQVIEFSKKYDLKIIS  197 (210)
Q Consensus       155 dL~~lAGl~P~~vi~Eil~-~~G~~~~~~~~~~fA~~~~lp~i~  197 (210)
                      ++.+.-.-.+..|+++..+ ..|.+...+++.+.+++|+++++-
T Consensus        95 ~~~~ai~~~t~~v~~~~~~n~tG~~~~l~~i~~~~~~~~~~v~v  138 (210)
T 1qz9_A           95 ELPQAIDQDTAVVMLTHVNYKTGYMHDMQALTALSHECGALAIW  138 (210)
T ss_dssp             GHHHHCSTTEEEEEEESBCTTTCBBCCHHHHHHHHHHHTCEEEE
T ss_pred             HHHHHCCCCCEEEEEEEECCCCCCEECHHHHHHHHHHCCCEEEE
T ss_conf             99974688835999975248877461699999886205742898


No 62 
>>1ulz_A Pyruvate carboxylase N-terminal domain; biotin carboxylase, ligase; 2.20A {Aquifex aeolicus VF5} (A:133-203)
Probab=21.54  E-value=59  Score=14.26  Aligned_cols=12  Identities=8%  Similarity=0.124  Sum_probs=5.6

Q ss_pred             HHHHHHCCCCCC
Q ss_conf             998740364324
Q gi|254780359|r   70 TAHKLKLNPMVL   81 (210)
Q Consensus        70 ~~~~L~Lp~m~~   81 (210)
                      .++++|.|.++.
T Consensus        14 ~a~~iG~PvVvK   25 (71)
T 1ulz_A           14 LAREIGYPVLLK   25 (71)
T ss_dssp             HHHHHCSSEEEE
T ss_pred             HHHHCCCCEEEE
T ss_conf             998559969999


No 63 
>>2yrx_A Phosphoribosylglycinamide synthetase; glycinamide ribonucleotide synthetase, GAR synthetase, ATP binding; HET: AMP; 1.90A {Geobacillus kaustophilus} PDB: 2yrw_A* 2ys6_A* 2ys7_A (A:138-209)
Probab=21.52  E-value=59  Score=14.26  Aligned_cols=10  Identities=0%  Similarity=-0.067  Sum_probs=4.1

Q ss_pred             HHHHHCCCCC
Q ss_conf             9874036432
Q gi|254780359|r   71 AHKLKLNPMV   80 (210)
Q Consensus        71 ~~~L~Lp~m~   80 (210)
                      ++++|.|.++
T Consensus        17 a~~igyPvvv   26 (72)
T 2yrx_A           17 IEQKGAPIVI   26 (72)
T ss_dssp             HHHHCSSEEE
T ss_pred             HHHCCCEEEE
T ss_conf             6504652999


No 64 
>>2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A (A:124-287)
Probab=21.43  E-value=59  Score=14.25  Aligned_cols=23  Identities=9%  Similarity=-0.206  Sum_probs=10.0

Q ss_pred             CHHHHHHHHHHCCCCEEEECCHH
Q ss_conf             99999999970899458614689
Q gi|254780359|r   47 TSEKMAFIIRHTCGIVCTPMPFH   69 (210)
Q Consensus        47 t~e~i~fm~~~~~Glic~al~~~   69 (210)
                      -+.....+...+..++.++....
T Consensus        35 ~~~~~~~~~~~g~~~~~v~~~~~   57 (164)
T 2w8t_A           35 HASIYDGCQQGNAEIVRFRHNSV   57 (164)
T ss_dssp             CHHHHHHHHHSCSEEEEECTTCH
T ss_pred             CHHHHCCCCCCCCCEEEECCCCH
T ss_conf             47022163235761699467857


No 65 
>>2hwg_A Phosphoenolpyruvate-protein phosphotransferase; enzyme I, phosphoenolpyruvate:sugar phosphotransferase system, PTS; HET: NEP; 2.70A {Escherichia coli} (A:1-27,A:149-257)
Probab=21.30  E-value=39  Score=15.40  Aligned_cols=82  Identities=13%  Similarity=0.091  Sum_probs=51.7

Q ss_pred             CCCEEEEHHHCCHHHHHHHH-HHCCCCEEEE-----CCHHHHHHHHCCCCCCCCCC--CCCCCEEEEEECCCCC-CCCCC
Q ss_conf             70133484459999999999-7089945861-----46899987403643244566--5665217887203477-78999
Q gi|254780359|r   36 EADLVLAAIHCTSEKMAFII-RHTCGIVCTP-----MPFHTAHKLKLNPMVLENES--VHKTAFTVSVDSKHGI-TTGIS  106 (210)
Q Consensus        36 EgDlv~~Ae~vt~e~i~fm~-~~~~Glic~a-----l~~~~~~~L~Lp~m~~~n~~--~~~taFtvsvd~~~g~-tTGIS  106 (210)
                      +...|+-|+-++|..+..|. .+..|+++-.     -..-.|+.+++|.++.-...  .-...-.+.||...|. .-+=+
T Consensus        32 ~~~~ILVa~el~Ps~~~~l~~~~i~GiVt~~GG~tSHaAIiAR~lgIP~Vvg~~~~~~~i~~G~~viiDg~~G~V~inP~  111 (136)
T 2hwg_A           32 QDEVILVAADLTPSETAQLNLKKVLGFITDAGGRTSXTSIXARSLELPAIVGTGSVTSQVKNDDYLILDAVNNQVYVNPT  111 (136)
T ss_dssp             CSCEEEEESCCCHHHHHTCCTTTEEEEEESSCCTTSHHHHHHHHTTCCEEECCSCHHHHCCTTCEEEEETTTTEEEESCC
T ss_pred             CCCEEEEEECCCHHHHHHCCHHHHEEEEEECCCCCCCHHHHHHHCCCCEEEECCCCHHHHCCCCEEEECCCCEEEEECCC
T ss_conf             99879998458767788607354016667626654209999997288648742542223056508998154017860354


Q ss_pred             HHHHHHHHHHH
Q ss_conf             88999999999
Q gi|254780359|r  107 ADDRAYTIKNL  117 (210)
Q Consensus       107 a~DRa~TIr~l  117 (210)
                      ...+..--+..
T Consensus       112 ~~~~~~y~~~~  122 (136)
T 2hwg_A          112 NEVIDKXRAVQ  122 (136)
T ss_dssp             HHHHHHHHHHH
T ss_pred             CHHHHHHHHHH
T ss_conf             01344555568


No 66 
>>1tif_A IF3-N, translation initiation factor 3; IF3 N-terminal domain, ribosome binding factor; 1.80A {Geobacillus stearothermophilus} (A:)
Probab=21.15  E-value=60  Score=14.21  Aligned_cols=31  Identities=23%  Similarity=0.556  Sum_probs=22.0

Q ss_pred             EEEECCCCC---CCCHHHHHHHHHHHCCCEEEHH
Q ss_conf             885368875---0598999999998389077799
Q gi|254780359|r  169 CELVNDDGT---IKKGKQVIEFSKKYDLKIISVQ  199 (210)
Q Consensus       169 ~Eil~~~G~---~~~~~~~~~fA~~~~lp~i~i~  199 (210)
                      .-+++++|.   .++..++.+.|++.++-++.++
T Consensus        16 VrlId~~g~~lGv~~~~eAl~~A~~~~lDLV~v~   49 (78)
T 1tif_A           16 VRLIDQNGDQLGIKSKQEALEIAARRNLDLVLVA   49 (78)
T ss_dssp             EEEECTTSCEEEEEEHHHHHHHHHHTTCEEEEEE
T ss_pred             EEEECCCCCEECCCCHHHHHHHHHHHCCCEEEEC
T ss_conf             9998799968572249999999998167879844


No 67 
>>3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, cytoplasm, one-carbon metabolism, pyridoxal phosphate; HET: MSE; 1.80A {Salmonella typhimurium} PDB: 1dfo_A* 1eqb_A* (A:40-284)
Probab=20.54  E-value=62  Score=14.13  Aligned_cols=36  Identities=6%  Similarity=-0.098  Sum_probs=28.7

Q ss_pred             CCCCEEEEEEEECCCCCCCCHHHHHHHHHHHCCCEE
Q ss_conf             996005988853688750598999999998389077
Q gi|254780359|r  161 GLPPIAVICELVNDDGTIKKGKQVIEFSKKYDLKII  196 (210)
Q Consensus       161 Gl~P~~vi~Eil~~~G~~~~~~~~~~fA~~~~lp~i  196 (210)
                      .-....++....+..|.+...+++.++|++||++++
T Consensus       127 ~~~~~v~~~~~~~~~g~~~~i~~I~~~a~~~gi~~~  162 (245)
T 3gbx_A          127 KEHKPKXIIGGFSAYSGVVDWAKXREIADSIGAYLF  162 (245)
T ss_dssp             HHHCCSEEEECCTTCCSCCCHHHHHHHHHHTTCEEE
T ss_pred             HHHCCCEEEECCCCCCCCCCHHHHHHHHHHCCEEEE
T ss_conf             874775488445335565578999998874381788


No 68 
>>3bb8_A CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartate aminotransferase fold, oxidoreductase; HET: PLP; 2.35A {Yersinia pseudotuberculosis} PDB: 3bcx_A (A:)
Probab=20.38  E-value=62  Score=14.11  Aligned_cols=59  Identities=12%  Similarity=0.060  Sum_probs=37.5

Q ss_pred             HHHHHHHHHHHCCCEEEEEECCC------------------CCCCCCEEEEHHHCCHHHHHHHHHHCCCCEEEECCH
Q ss_conf             66999999996898299996778------------------988701334844599999999997089945861468
Q gi|254780359|r   10 RYIEDVIQSFQKGEMVIVTDADD------------------RENEADLVLAAIHCTSEKMAFIIRHTCGIVCTPMPF   68 (210)
Q Consensus        10 ~~ie~ai~al~~G~~Viv~D~~d------------------REnEgDlv~~Ae~vt~e~i~fm~~~~~Glic~al~~   68 (210)
                      ..+++++..+-..+-++.+.+..                  .=++||-|+--...-+..++-+...+.-.+.+.++.
T Consensus        65 ~~l~~~~a~~~~~~~~v~~~~gt~a~~~~~~~~~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~v~v~~~~  141 (437)
T 3bb8_A           65 DAFEKKLGEYLGVPYVLTTTSGSSANLLALTALTSPKLGVRALKPGDEVITVAAGFPTTVNPTIQNGLIPVFVDVDI  141 (437)
T ss_dssp             HHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHTTCGGGGGGSCCTTCEEEECSSSCHHHHHHHHHTTCEEEECCEET
T ss_pred             HHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHCCCHHHHCCCCCCCEEEECCCCCCHHHHHHHHCCCCEEECCCCC
T ss_conf             99999999997998399965679999999997415135541466898688346443005999986245337525665


Done!