Query gi|254780359|ref|YP_003064772.1| GTP cyclohydrolase II protein (riboflavin biosynthesis) [Candidatus Liberibacter asiaticus str. psy62] Match_columns 210 No_of_seqs 114 out of 1786 Neff 5.2 Searched_HMMs 33803 Date Wed Jun 1 12:23:54 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780359.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >1snn_A DHBP synthase, 3,4-dih 100.0 0 0 531.2 20.9 201 9-210 1-225 (227) 2 >1g57_A DHBP synthase, 3,4-dih 100.0 0 0 526.6 21.0 206 4-209 8-213 (217) 3 >1k4i_A 3,4-dihydroxy-2-butano 100.0 0 0 522.6 18.8 202 8-209 11-224 (233) 4 >1tks_A 3,4-dihydroxy-2-butano 100.0 0 0 512.8 19.9 200 8-207 4-204 (204) 5 >2z67_A O-phosphoseryl-tRNA(SE 68.1 9.7 0.00029 19.2 5.6 49 149-197 172-220 (314) 6 >1ko7_A HPR kinase/phosphatase 62.3 7.6 0.00022 19.9 3.1 71 124-199 41-111 (129) 7 >2dkj_A Serine hydroxymethyltr 62.1 7.8 0.00023 19.8 3.2 45 153-197 120-164 (244) 8 >1y0n_A Hypothetical UPF0270 p 61.2 13 0.00039 18.4 5.1 39 4-46 33-71 (78) 9 >3gyb_A Transcriptional regula 58.7 14 0.00043 18.1 6.5 125 9-150 20-147 (151) 10 >2fnu_A Aminotransferase; prot 58.5 15 0.00043 18.1 4.5 60 10-69 26-97 (238) 11 >3ecd_A Serine hydroxymethyltr 56.6 12 0.00037 18.5 3.4 42 156-197 123-164 (243) 12 >1gc0_A Methionine gamma-lyase 56.5 15 0.00043 18.1 3.8 42 156-197 144-185 (260) 13 >1b9h_A AHBA synthase, protein 52.8 15 0.00044 18.0 3.3 35 162-196 123-157 (250) 14 >3frk_A QDTB; aminotransferase 52.4 18 0.00054 17.5 5.0 19 11-29 33-51 (237) 15 >2rgy_A Transcriptional regula 50.8 13 0.00038 18.4 2.7 95 9-120 23-125 (132) 16 >2vyc_A Biodegradative arginin 50.7 13 0.00038 18.4 2.7 48 151-198 157-208 (301) 17 >1c4k_A Protein (ornithine dec 48.3 21 0.00063 17.1 4.1 45 153-197 162-207 (306) 18 >1mdo_A ARNB aminotransferase; 47.3 19 0.00055 17.4 3.1 57 10-66 26-92 (243) 19 >2po3_A 4-dehydrase; external 46.6 23 0.00067 16.9 4.4 23 173-195 119-141 (233) 20 >3dr4_A Putative perosamine sy 46.3 23 0.00067 16.9 3.7 39 159-197 138-176 (267) 21 >2cb1_A O-acetyl homoserine su 46.2 23 0.00068 16.8 4.3 39 158-196 136-174 (277) 22 >2vi8_A Serine hydroxymethyltr 45.9 21 0.00062 17.1 3.2 43 155-197 122-164 (243) 23 >1o69_A Aminotransferase; stru 45.6 23 0.00067 16.9 3.3 18 46-63 107-124 (394) 24 >1w96_A ACC, acetyl-coenzyme A 43.4 19 0.00056 17.3 2.7 17 180-196 6-22 (66) 25 >3jsz_A LGT1, putative unchara 41.2 14 0.00041 18.2 1.7 12 43-54 65-76 (303) 26 >3iuu_A MLRC-like, putative me 40.3 22 0.00066 16.9 2.6 47 9-60 3-50 (197) 27 >1n8p_A Cystathionine gamma-ly 39.0 29 0.00087 16.2 4.0 70 126-196 100-172 (251) 28 >1cs1_A CGS, protein (cystathi 38.1 30 0.0009 16.1 4.7 42 156-197 130-172 (246) 29 >3a2b_A Serine palmitoyltransf 35.7 33 0.00098 15.8 4.7 31 166-196 97-127 (191) 30 >3k28_A Glutamate-1-semialdehy 35.6 33 0.00099 15.8 4.0 62 136-197 66-132 (186) 31 >1ibj_A CBL, cystathionine bet 34.0 35 0.001 15.7 4.8 47 151-197 205-252 (326) 32 >2jya_A AGR_C_3324P, uncharact 32.4 35 0.001 15.7 2.6 19 180-198 60-78 (106) 33 >2a7v_A Serine hydroxymethyltr 32.2 38 0.0011 15.5 3.2 36 162-197 138-173 (266) 34 >2vpq_A Acetyl-COA carboxylase 32.2 38 0.0011 15.5 3.1 16 180-195 7-22 (70) 35 >2uvp_A HOBA; hypothetical pro 31.1 38 0.0011 15.5 2.6 25 11-35 9-33 (153) 36 >3g7u_A Cytosine-specific meth 30.4 6.5 0.00019 20.3 -1.4 26 108-133 27-52 (63) 37 >1a9x_A Carbamoyl phosphate sy 29.2 41 0.0012 15.2 2.5 15 181-195 10-24 (68) 38 >3b8x_A WBDK, pyridoxamine 5-p 28.7 43 0.0013 15.1 3.7 61 9-69 36-112 (390) 39 >2oga_A Transaminase; PLP-depe 28.1 44 0.0013 15.0 3.6 25 172-196 120-144 (233) 40 >2bbw_A Adenylate kinase 4, AK 28.1 44 0.0013 15.0 4.6 33 171-204 32-64 (182) 41 >1knx_A Probable HPR(Ser) kina 27.8 35 0.001 15.7 2.0 65 128-197 48-112 (119) 42 >3hvy_A Cystathionine beta-lya 27.6 45 0.0013 15.0 3.8 43 155-197 103-150 (215) 43 >1bs0_A Protein (8-amino-7-oxo 27.6 45 0.0013 15.0 5.1 30 167-196 97-126 (187) 44 >3gmt_A Adenylate kinase; ssgc 27.4 46 0.0014 15.0 4.6 32 171-203 13-44 (149) 45 >2a8j_A Taspase 1, threonine a 27.4 27 0.0008 16.4 1.3 27 177-203 163-189 (420) 46 >2wqd_A Phosphoenolpyruvate-pr 27.0 19 0.00058 17.3 0.5 79 37-115 36-123 (140) 47 >2gez_A L-asparaginase alpha s 26.9 28 0.00083 16.3 1.3 24 174-197 46-69 (69) 48 >3c19_A Uncharacterized protei 26.7 40 0.0012 15.3 2.1 29 179-207 50-80 (101) 49 >1v72_A Aldolase; PLP-dependen 26.4 48 0.0014 14.8 3.2 51 147-197 123-178 (259) 50 >1y88_A Hypothetical protein A 26.3 40 0.0012 15.3 2.0 18 146-163 102-119 (144) 51 >2cob_A LCOR protein; MLR2, KI 25.9 49 0.0014 14.8 3.0 21 4-24 11-31 (70) 52 >2w7t_A CTP synthetase, putati 25.6 36 0.0011 15.6 1.7 40 158-197 61-101 (180) 53 >3h7f_A Serine hydroxymethyltr 25.6 49 0.0015 14.8 4.4 90 108-197 64-164 (242) 54 >3hqs_A CAI-1 autoinducer synt 25.4 50 0.0015 14.7 4.1 55 143-197 166-221 (409) 55 >1rv3_A Serine hydroxymethyltr 25.1 50 0.0015 14.7 4.0 39 158-196 134-172 (266) 56 >1k2x_A Putative L-asparaginas 24.4 27 0.00081 16.4 0.9 23 175-197 46-68 (68) 57 >1uc8_A LYSX, lysine biosynthe 23.9 53 0.0016 14.6 2.5 15 181-195 10-24 (72) 58 >1m22_A Peptide amidase, PAM; 23.7 54 0.0016 14.5 3.2 27 182-208 17-43 (83) 59 >1zym_A Enzyme I; phosphotrans 22.4 51 0.0015 14.7 1.9 77 36-112 32-117 (137) 60 >3e6g_A Xometc, cystathionine 22.2 57 0.0017 14.3 3.7 33 165-197 154-187 (262) 61 >1qz9_A Kynureninase; kynureni 22.1 58 0.0017 14.3 5.4 43 155-197 95-138 (210) 62 >1ulz_A Pyruvate carboxylase N 21.5 59 0.0017 14.3 3.1 12 70-81 14-25 (71) 63 >2yrx_A Phosphoribosylglycinam 21.5 59 0.0018 14.3 2.6 10 71-80 17-26 (72) 64 >2w8t_A SPT, serine palmitoylt 21.4 59 0.0018 14.2 4.2 23 47-69 35-57 (164) 65 >2hwg_A Phosphoenolpyruvate-pr 21.3 39 0.0012 15.4 1.2 82 36-117 32-122 (136) 66 >1tif_A IF3-N, translation ini 21.2 60 0.0018 14.2 2.9 31 169-199 16-49 (78) 67 >3gbx_A Serine hydroxymethyltr 20.5 62 0.0018 14.1 4.0 36 161-196 127-162 (245) 68 >3bb8_A CDP-4-keto-6-deoxy-D-g 20.4 62 0.0018 14.1 4.7 59 10-68 65-141 (437) No 1 >>1snn_A DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin biosynthesis, isomerase; HET: 5RP; 1.55A {Methanocaldococcus jannaschii} (A:) Probab=100.00 E-value=0 Score=531.19 Aligned_cols=201 Identities=31% Similarity=0.554 Sum_probs=195.2 Q ss_pred HHHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEEHHHCCHHHHHHHHHHCCCCEEEECCHHHHHHHHCCCCCC------- Q ss_conf 5669999999968982999967789887013348445999999999970899458614689998740364324------- Q gi|254780359|r 9 ERYIEDVIQSFQKGEMVIVTDADDRENEADLVLAAIHCTSEKMAFIIRHTCGIVCTPMPFHTAHKLKLNPMVL------- 81 (210) Q Consensus 9 ~~~ie~ai~al~~G~~Viv~D~~dREnEgDlv~~Ae~vt~e~i~fm~~~~~Glic~al~~~~~~~L~Lp~m~~------- 81 (210) +++|++||++||+|+||||+|+++||||||||++|+++||++|+||++|++|+||+++++++|++|+||+|+. T Consensus 1 ~~~ie~ai~al~~G~~Viv~D~~~RE~Egdlv~~Ae~~T~e~i~fm~~~a~GliC~a~~~~~a~~L~Lp~m~~~~~~~~~ 80 (227) T 1snn_A 1 MNNVEKAIEALKKGEIILVYDSDEREGETDMVVASQFITPEHIRIMRKDAGGLICTALHPDICNKLGIPFMVDILEFASQ 80 (227) T ss_dssp -CHHHHHHHHHHTTCCEEEECCTTTTCCEEEEEEGGGCCHHHHHHHHHHTEEEEEEEECHHHHHHHTCCCHHHHHHHHTT T ss_pred CCCHHHHHHHHHCCCEEEEEECCCCCCCCCEEEEHHHCCHHHHHHHHHHCCCCEEECCCHHHHHHCCCCCCCCCCCCCCC T ss_conf 96399999999879979998589987651489885659999999999957998774589999987699511230000111 Q ss_pred -----------CCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHH------HHCCHHHHCCCCCCCEEEECCCCCC Q ss_conf -----------45665665217887203477789998899999999984------2013243138985001001269824 Q gi|254780359|r 82 -----------ENESVHKTAFTVSVDSKHGITTGISADDRAYTIKNLAN------PHSIADNFVRPGHIFPLISRDGGVL 144 (210) Q Consensus 82 -----------~n~~~~~taFtvsvd~~~g~tTGISa~DRa~TIr~la~------~~~~~~df~~PGHV~pL~a~~gGvl 144 (210) .|+..++++|||||||+ +++|||||+|||+|||.|++ ++++|+||++|||||||++++|||+ T Consensus 81 ~~~~~~~~~~~~~~~~~~t~FtvsVd~~-~~~TGISa~DRa~Tir~la~~~~~~~~~~~~~df~~PGHV~pL~a~~gGvl 159 (227) T 1snn_A 81 KFKVLRELYPNDIPYDEKSSFSITINHR-KTFTGITDNDRAFTIKKLAELVKEGRFNDFGKEFRSPGSVTLLRAAEGLVK 159 (227) T ss_dssp TCHHHHHTCCTTCTTSSSCCEEEEEEET-TCSSSCSHHHHHHHHHHHHHHHHTTCGGGHHHHEEEEEEEEEEECCTTGGG T ss_pred CCCCCCCCCCCCCCCCCCCCEEEEEECC-CCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCEECCCEEECCCCC T ss_conf 2332123445677666774169987046-776897606788899998731122486545344058860135035037734 Q ss_pred CCCCHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHCCCEEEHHHHHHHHHHCCC Q ss_conf 667802677699887699600598885368875059899999999838907779999999984379 Q gi|254780359|r 145 VRPGHTEASVDLCKITGLPPIAVICELVNDDGTIKKGKQVIEFSKKYDLKIISVQDLIAWRKKKEI 210 (210) Q Consensus 145 ~R~GHTEaavdL~~lAGl~P~~vi~Eil~~~G~~~~~~~~~~fA~~~~lp~i~i~dli~yr~~~ei 210 (210) +|+||||||||||+||||+|++|||||||++|+||+++++++||++|+||+++|+|||+||+++|+ T Consensus 160 ~R~GhTEasvdL~~lAGl~p~~vi~eil~~~G~~~~~~~~~~fA~~h~l~~isi~dli~yr~~~e~ 225 (227) T 1snn_A 160 NRQGHTEMTVALAELANLVPITTICEMMGDDGNAMSKNETKRYAEKHNLIYLSGEEIINYYLDKYL 225 (227) T ss_dssp TCCSHHHHHHHHHHHTTSCSEEEEEEEBCTTSSBCCHHHHHHHHHHHTCCEEEHHHHHHHC----- T ss_pred CCCCHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHCCCCEEEHHHHHHHHHHHHH T ss_conf 666378899999974699744999999679987458899999999849978989999999998761 No 2 >>1g57_A DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavine biosynthesis, skeletal rearrangement, antimicrobial target; 1.40A {Escherichia coli} (A:) Probab=100.00 E-value=0 Score=526.59 Aligned_cols=206 Identities=39% Similarity=0.689 Sum_probs=202.5 Q ss_pred CCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEEHHHCCHHHHHHHHHHCCCCEEEECCHHHHHHHHCCCCCCCC Q ss_conf 75779566999999996898299996778988701334844599999999997089945861468999874036432445 Q gi|254780359|r 4 KKSLDERYIEDVIQSFQKGEMVIVTDADDRENEADLVLAAIHCTSEKMAFIIRHTCGIVCTPMPFHTAHKLKLNPMVLEN 83 (210) Q Consensus 4 ~~~~~~~~ie~ai~al~~G~~Viv~D~~dREnEgDlv~~Ae~vt~e~i~fm~~~~~Glic~al~~~~~~~L~Lp~m~~~n 83 (210) ..++.+++|++||++||+|+||||+|+++||||||||++||++|+++|+||++|++|+||+++++++|++|+||+|+..| T Consensus 8 ~~~~~~~~v~~ai~alr~G~~Viv~D~~~re~egdlv~aAe~~t~e~i~fm~~~~~Glic~a~~~~~a~~L~Lp~m~~~~ 87 (217) T 1g57_A 8 SFGTPFERVENALAALREGRGVMVLDDEDRENEGDMIFPAETMTVEQMALTIRHGSGIVCLCITEDRRKQLDLPMMVENN 87 (217) T ss_dssp GGCCHHHHHHHHHHHHHTTCCEEEEC----CCCEEEEEETTTCCHHHHHHHHHHBCSCCEEEECHHHHHHTTCCBSCSSC T ss_pred HCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEEHHHCCHHHHHHHHHHCCCEEEEECCHHHHHHCCCCCCCCCC T ss_conf 51694236999999998899799986899876505898856599999999998189819980689999555985745455 Q ss_pred CCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHCCCC Q ss_conf 66566521788720347778999889999999998420132431389850010012698246678026776998876996 Q gi|254780359|r 84 ESVHKTAFTVSVDSKHGITTGISADDRAYTIKNLANPHSIADNFVRPGHIFPLISRDGGVLVRPGHTEASVDLCKITGLP 163 (210) Q Consensus 84 ~~~~~taFtvsvd~~~g~tTGISa~DRa~TIr~la~~~~~~~df~~PGHV~pL~a~~gGvl~R~GHTEaavdL~~lAGl~ 163 (210) ++.++++|||||||++|++|||||+||++|||.|+|++++++||++|||||||++++|||++|+|||||+||||+||||. T Consensus 88 ~~~~~~~ftvsVd~~~g~~TGISa~DRa~Tir~lad~~~~~~df~~PGHv~pL~a~~gGvl~R~GhtEaavdLa~lAGl~ 167 (217) T 1g57_A 88 TSAYGTGFTVTIEAAEGVTTGVSAADRITTVRAAIADGAKPSDLNRPGHVFPLRAQAGGVLTRGGHTEATIDLMTLAGFK 167 (217) T ss_dssp CCTTCCCBBSCEEESSSCSSSCSHHHHHHHHHHHHSTTCCGGGEEEEEEEEEEECCTTGGGTCCSHHHHHHHHHHHTTSC T ss_pred CCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCHHHCCCCCCCCCEEECCCCCCCCCCHHHHHHHHHHHCCCC T ss_conf 66777754566651567568868889999999985668886761699810731004688546785788988799874999 Q ss_pred CEEEEEEEECCCCCCCCHHHHHHHHHHHCCCEEEHHHHHHHHHHCC Q ss_conf 0059888536887505989999999983890777999999998437 Q gi|254780359|r 164 PIAVICELVNDDGTIKKGKQVIEFSKKYDLKIISVQDLIAWRKKKE 209 (210) Q Consensus 164 P~~vi~Eil~~~G~~~~~~~~~~fA~~~~lp~i~i~dli~yr~~~e 209 (210) |++|||||++++|+||+.+++++||++|+||+++|+|||+||+++| T Consensus 168 P~avi~eil~~dG~~~~~~~~~~fA~~h~l~~i~i~dli~yr~~~e 213 (217) T 1g57_A 168 PAGVLCELTNDDGTMARAPECIEFANKHNMALVTIEDLVAYRQAHE 213 (217) T ss_dssp SCEEEEEBBCTTSSBCCHHHHHHHHHHTTCEEEEHHHHHHHHHHHC T ss_pred CEEEEEEEECCCCCCCCHHHHHHHHHHCCCCEEEHHHHHHHHHHHC T ss_conf 7499999876988715889999999984997998999999999716 No 3 >>1k4i_A 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin biosynthesis, antimicrobial target, structure-based design, isomerase; 0.98A {Magnaporthe grisea} (A:) Probab=100.00 E-value=0 Score=522.62 Aligned_cols=202 Identities=45% Similarity=0.775 Sum_probs=197.8 Q ss_pred CHHHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEEHHHCCHHHHHHHHHHCCCCEEEECCHHHHHHHHCCCCCCCCCCCC Q ss_conf 95669999999968982999967789887013348445999999999970899458614689998740364324456656 Q gi|254780359|r 8 DERYIEDVIQSFQKGEMVIVTDADDRENEADLVLAAIHCTSEKMAFIIRHTCGIVCTPMPFHTAHKLKLNPMVLENESVH 87 (210) Q Consensus 8 ~~~~ie~ai~al~~G~~Viv~D~~dREnEgDlv~~Ae~vt~e~i~fm~~~~~Glic~al~~~~~~~L~Lp~m~~~n~~~~ 87 (210) .+++|++||++||+|+||||+||++||||||||++||++|+++|+||++|++|+||+++++++|++|+||+|+..|++.+ T Consensus 11 ~~~~i~~ai~al~~G~~Viv~Dd~~rE~egdlv~aAe~~T~e~i~fm~~~~~Glic~ai~~~~~~~L~Lp~m~~~n~~~~ 90 (233) T 1k4i_A 11 NFDAIPDVIQAFKNGEFVVVLDDPSRENEADLIIAAESVTTEQMAFMVRHSSGLICAPLTPERTTALDLPQMVTHNADPR 90 (233) T ss_dssp -CCCHHHHHHHHHTTCCEEEECCTTTTCCEEEEEEGGGCCHHHHHHHHHHBCSCCEEEECHHHHHHTTCCBSCSSCCCSS T ss_pred CCCCHHHHHHHHHCCCEEEEEECCCCCCCCCEEEEHHHCCHHHHHHHHHHCCCCEEEEECHHHHHCCCCCCCCCCCCCCC T ss_conf 38659999999988996999967998875058978676999999999985898689975788872468855334677756 Q ss_pred CCCEEEEEECC-CCCCCCCCHHHHHHHHHHHHHHHCCHHHHCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEE Q ss_conf 65217887203-47778999889999999998420132431389850010012698246678026776998876996005 Q gi|254780359|r 88 KTAFTVSVDSK-HGITTGISADDRAYTIKNLANPHSIADNFVRPGHIFPLISRDGGVLVRPGHTEASVDLCKITGLPPIA 166 (210) Q Consensus 88 ~taFtvsvd~~-~g~tTGISa~DRa~TIr~la~~~~~~~df~~PGHV~pL~a~~gGvl~R~GHTEaavdL~~lAGl~P~~ 166 (210) +++||+|||++ .+++|||||+|||+|||+|++++++++||++|||||||++++|||++|+|||||+||||+|||++|++ T Consensus 91 ~t~ftvsvda~~~g~~TGISa~DRa~Tir~Lad~~~~~~df~~PGHv~pL~a~~gGvl~R~GhtEaavdLarlAGl~P~a 170 (233) T 1k4i_A 91 GTAYTVSVDAEHPSTTTGISAHDRALACRMLAAPDAQPSHFRRPGHVFPLRAVAGGVRARRGHTEAGVELCRLAGKRPVA 170 (233) T ss_dssp CCCBBCCEEECSTTCSSSCSHHHHHHHHHHHHCTTCCGGGEEEEEEEEEEECCTTHHHHCCSHHHHHHHHHHHTTCCSBE T ss_pred CCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCHHHHCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCE T ss_conf 67752147730577667878999999999862888886661699764225643798367897889999999982999718 Q ss_pred EEEEEECCCCC-----------CCCHHHHHHHHHHHCCCEEEHHHHHHHHHHCC Q ss_conf 98885368875-----------05989999999983890777999999998437 Q gi|254780359|r 167 VICELVNDDGT-----------IKKGKQVIEFSKKYDLKIISVQDLIAWRKKKE 209 (210) Q Consensus 167 vi~Eil~~~G~-----------~~~~~~~~~fA~~~~lp~i~i~dli~yr~~~e 209 (210) ||||||+++|+ ||+++++++||++|+||+++|+|||+||+++| T Consensus 171 vicEil~~dG~~~~~~~~~~~~ma~~~~~~~fA~~h~l~~i~i~dli~yr~~~e 224 (233) T 1k4i_A 171 VISEIVDDGQEVEGRAVRAAPGMLRGDECVAFARRWGLKVCTIEDMIAHVEKTE 224 (233) T ss_dssp EEEEBEECCEECTTSSCEESCEECCHHHHHHHHHHTTCEEEEHHHHHHHHHHHH T ss_pred EEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEHHHHHHHHHHCC T ss_conf 999994089865543333431234549999999980996898999999998523 No 4 >>1tks_A 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin biosynthesis, synthetic gene, isomerase; 1.60A {Candida albicans SC5314} (A:) Probab=100.00 E-value=0 Score=512.79 Aligned_cols=200 Identities=45% Similarity=0.745 Sum_probs=196.4 Q ss_pred CHHHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEEHHHCCHHHHHHHHHHCCCCEEEECCHHHHHHHHCCCCCCCCCCCC Q ss_conf 95669999999968982999967789887013348445999999999970899458614689998740364324456656 Q gi|254780359|r 8 DERYIEDVIQSFQKGEMVIVTDADDRENEADLVLAAIHCTSEKMAFIIRHTCGIVCTPMPFHTAHKLKLNPMVLENESVH 87 (210) Q Consensus 8 ~~~~ie~ai~al~~G~~Viv~D~~dREnEgDlv~~Ae~vt~e~i~fm~~~~~Glic~al~~~~~~~L~Lp~m~~~n~~~~ 87 (210) .+++|++||++||+|+||||+|+++||||||||++||++|+++|+||++|++|+||+|+++++|++|+||+|+..|.+.+ T Consensus 4 ~~~~i~~ai~alr~G~~Viv~D~~~re~egdlv~aAe~~t~e~i~fm~~~~~Glic~ai~~~~a~~L~Lp~m~~~~~~~~ 83 (204) T 1tks_A 4 IFTPIEEALEAYKNGEFLIVMDDEDRENEGDLIMAAELITQEKMAFLVRYSSGYVCVPLSEERANQLELPPMLANRSDRH 83 (204) T ss_dssp CSCCHHHHHHHHHTTCCEEEESSSCTTCBCEEEEEGGGCCHHHHHHHHHTBCSCCEEEEEHHHHHHTTCCBSCC------ T ss_pred CCCCHHHHHHHHHCCCEEEEEECCCCCCCCCEEEEHHHCCHHHHHHHHHHCCCCEEEECCHHHHHHHCCCCCCCCCCCCC T ss_conf 52439999999988996999968998774068989798899999999984588758845899986750786556666777 Q ss_pred CCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEE Q ss_conf 65217887203477789998899999999984201324313898500100126982466780267769988769960059 Q gi|254780359|r 88 KTAFTVSVDSKHGITTGISADDRAYTIKNLANPHSIADNFVRPGHIFPLISRDGGVLVRPGHTEASVDLCKITGLPPIAV 167 (210) Q Consensus 88 ~taFtvsvd~~~g~tTGISa~DRa~TIr~la~~~~~~~df~~PGHV~pL~a~~gGvl~R~GHTEaavdL~~lAGl~P~~v 167 (210) +++|+|||||+.|++|||||+||++|||.|+|++++++||++|||||||++++|||++|+|||||+||||+||||+|++| T Consensus 84 ~t~ftvsvda~~g~~TGISa~DRa~Tir~lad~~~~~~df~~PGHv~pL~a~~ggvl~R~GhtEaavdL~~lAgl~P~av 163 (204) T 1tks_A 84 GTAYTITCDFAEGTTTGISAHDRALTTRSLANPNSKPQDFIKPGHILPLRAVPGLLKKRRGHTEAAVQLSTLAGLQPAGV 163 (204) T ss_dssp CCCBBCCEEESTTCSSSCSHHHHHHHHHHHHCTTCCGGGEEEEEEEEEEEECTTGGGTCCCHHHHHHHHHHHTTSCSBEE T ss_pred CCCEEEECCCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEE T ss_conf 77511000024688877359999999998737899877850454311146525781457658999999998279987079 Q ss_pred EEEEEC-CCCCCCCHHHHHHHHHHHCCCEEEHHHHHHHHHH Q ss_conf 888536-8875059899999999838907779999999984 Q gi|254780359|r 168 ICELVN-DDGTIKKGKQVIEFSKKYDLKIISVQDLIAWRKK 207 (210) Q Consensus 168 i~Eil~-~~G~~~~~~~~~~fA~~~~lp~i~i~dli~yr~~ 207 (210) |||||+ ++|+|++.+++++||++|+||+++|+|||+||++ T Consensus 164 i~eil~d~dG~~~~~~~~~~fA~~h~l~~i~i~dli~yr~~ 204 (204) T 1tks_A 164 ICELVRDEDGLMMRLDDCIQFGKKHGIKIININQLVEYISK 204 (204) T ss_dssp EEEBBCTTTCCBCBHHHHHHHHHHHTCCEEEHHHHHHHHCC T ss_pred EEEEEECCCCCCCCHHHHHHHHHHCCCCEEEHHHHHHHHHC T ss_conf 99998889987648999999999839969989999999849 No 5 >>2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, pyridoxal-5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis S2} (A:47-360) Probab=68.14 E-value=9.7 Score=19.18 Aligned_cols=49 Identities=12% Similarity=0.087 Sum_probs=41.4 Q ss_pred HHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHCCCEEE Q ss_conf 0267769988769960059888536887505989999999983890777 Q gi|254780359|r 149 HTEASVDLCKITGLPPIAVICELVNDDGTIKKGKQVIEFSKKYDLKIIS 197 (210) Q Consensus 149 HTEaavdL~~lAGl~P~~vi~Eil~~~G~~~~~~~~~~fA~~~~lp~i~ 197 (210) .-|..++-..-++..+..+++-.-+..|...+.+++.+++++||++++- T Consensus 172 ~l~~~i~~~~~~~~~~~v~~~~~~~~~g~~~~l~~I~~l~~~~gi~liv 220 (314) T 2z67_A 172 DIENAIKKEIELGNRPCVLSTLTFFPPRNSDDIVEIAKICENYDIPHII 220 (314) T ss_dssp HHHHHHHHHHHTTCCEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEE T ss_pred HHHHHHHHCCCCCCEEEEEECCCCCCCCEECCHHHHHHHHHHCCCEEEE T ss_conf 9999998560338659999714878996301499999999981985999 No 6 >>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} (A:1-129) Probab=62.35 E-value=7.6 Score=19.86 Aligned_cols=71 Identities=14% Similarity=0.080 Sum_probs=49.9 Q ss_pred HHHHCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHCCCEEEHH Q ss_conf 2431389850010012698246678026776998876996005988853688750598999999998389077799 Q gi|254780359|r 124 ADNFVRPGHIFPLISRDGGVLVRPGHTEASVDLCKITGLPPIAVICELVNDDGTIKKGKQVIEFSKKYDLKIISVQ 199 (210) Q Consensus 124 ~~df~~PGHV~pL~a~~gGvl~R~GHTEaavdL~~lAGl~P~~vi~Eil~~~G~~~~~~~~~~fA~~~~lp~i~i~ 199 (210) .-+|.+||-+...-.++-+.+..-...+..--+.++....+++++.- +....-+++.++|+++++|+++.. T Consensus 41 ~~~~~~~~~i~i~g~~e~~~l~~l~~~~~~~~~~~~~~~~~~~iiit-----~~~~~~~~i~~~a~~~~iPil~t~ 111 (129) T 1ko7_A 41 YFSHYASDRIQLLGTTELSFYNLLPDEERKGRMRKLCRPETPAIIVT-----RDLEPPEELIEAAKEHETPLITSK 111 (129) T ss_dssp CCTTCCTTSEEEECHHHHHHHHHSCHHHHTTHHHHHCCTTCCCEEEC-----TTCCCCHHHHHHHHHTTCCEEECC T ss_pred CCCCCCCCEEEEECHHHHHHHHHCCHHHHHHHHHHHHCCCCCEEEEE-----CCCCCCHHHHHHHHHHCCEEEECC T ss_conf 66566898799985899999986899999999999736799889997-----999998999999998198399848 No 7 >>2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics, NPPSFA; HET: PLP; 1.15A {Thermus thermophilus HB8} (A:33-276) Probab=62.13 E-value=7.8 Score=19.76 Aligned_cols=45 Identities=9% Similarity=-0.051 Sum_probs=36.4 Q ss_pred HHHHHHHCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHCCCEEE Q ss_conf 769988769960059888536887505989999999983890777 Q gi|254780359|r 153 SVDLCKITGLPPIAVICELVNDDGTIKKGKQVIEFSKKYDLKIIS 197 (210) Q Consensus 153 avdL~~lAGl~P~~vi~Eil~~~G~~~~~~~~~~fA~~~~lp~i~ 197 (210) .-+|.+...=.+..|++...+..|...+.+++.++|++||++++- T Consensus 120 ~~~l~~~i~~~t~~v~~~~~~~~G~~~~i~~i~~la~~~g~~l~v 164 (244) T 2dkj_A 120 LEEVRRLALEHRPKVIVAGASAYPRFWDFKAFREIADEVGAYLVV 164 (244) T ss_dssp HHHHHHHHHHHCCSEEEECCSSCCSCCCHHHHHHHHHHHTCEEEE T ss_pred HHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHHHHHHHCCCEEEC T ss_conf 999999998639998982554565555789999876311857871 No 8 >>1y0n_A Hypothetical UPF0270 protein PA3463; MCSG, midwest center for structural genomics, protein structure initiative, PSI; 2.00A {Pseudomonas aeruginosa PAO1} (A:) Probab=61.19 E-value=13 Score=18.37 Aligned_cols=39 Identities=18% Similarity=0.343 Sum_probs=27.4 Q ss_pred CCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEEHHHC Q ss_conf 7577956699999999689829999677898870133484459 Q gi|254780359|r 4 KKSLDERYIEDVIQSFQKGEMVIVTDADDRENEADLVLAAIHC 46 (210) Q Consensus 4 ~~~~~~~~ie~ai~al~~G~~Viv~D~~dREnEgDlv~~Ae~v 46 (210) +.++ ...|+++..+|++|+.||+||... |.-=+.+.+.. T Consensus 33 E~sl-~~kv~qv~~qL~~G~aviv~se~~---Es~~I~~k~~~ 71 (78) T 1y0n_A 33 ETPL-DVRVERARHALRRGEAVILFDPES---QQCQLMLRSEV 71 (78) T ss_dssp -CCH-HHHHHHHHHHHHTTSEEEEECTTT---CCEEEEEGGGS T ss_pred HCCH-HHHHHHHHHHHHCCCEEEEECCCC---CEEEEEEHHHH T ss_conf 4129-999999999998699899987988---74741659983 No 9 >>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum} (A:1-101,A:231-280) Probab=58.70 E-value=14 Score=18.10 Aligned_cols=125 Identities=14% Similarity=0.148 Sum_probs=75.8 Q ss_pred HHHHHHHHHHH--HCCCEEEEEECCCCCCCCCEEEEHHHCCHHHHHHHHHHCCCCEEEECCH-HHHHHHHCCCCCCCCCC Q ss_conf 56699999999--6898299996778988701334844599999999997089945861468-99987403643244566 Q gi|254780359|r 9 ERYIEDVIQSF--QKGEMVIVTDADDRENEADLVLAAIHCTSEKMAFIIRHTCGIVCTPMPF-HTAHKLKLNPMVLENES 85 (210) Q Consensus 9 ~~~ie~ai~al--~~G~~Viv~D~~dREnEgDlv~~Ae~vt~e~i~fm~~~~~Glic~al~~-~~~~~L~Lp~m~~~n~~ 85 (210) +..+-+.|+.. +.|.-+++++..+.+.|-+.+ -.++.+...|+|..+... +.+.+.++|..+..... T Consensus 20 ~~~li~gI~~aa~~~Gy~vii~~s~~~~~e~~~i----------~~ll~~~VDGIIi~~~~~~~~L~~~~IPiV~Idr~~ 89 (151) T 3gyb_A 20 FIDLIQSLSDVLTPKGYRLSVIDSLTSQAGTDPI----------TSALSXRPDGIIIAQDIPDFTVPDSLPPFVIAGTRI 89 (151) T ss_dssp GHHHHHHHHHHHGGGTCEEEEECSSSSCSSSCHH----------HHHHTTCCSEEEEESCC--------CCCEEEESCCC T ss_pred HHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHH----------HHHHHHCCCEEEECCCCHHHHHHCCCCCEEEECCCC T ss_conf 9999999999999869989999689998999999----------999971985355125301266641478626523446 Q ss_pred CCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHCCCCCCCEEEECCCCCCCCCCHH Q ss_conf 56652178872034777899988999999999842013243138985001001269824667802 Q gi|254780359|r 86 VHKTAFTVSVDSKHGITTGISADDRAYTIKNLANPHSIADNFVRPGHIFPLISRDGGVLVRPGHT 150 (210) Q Consensus 86 ~~~taFtvsvd~~~g~tTGISa~DRa~TIr~la~~~~~~~df~~PGHV~pL~a~~gGvl~R~GHT 150 (210) ......+|..|..-| .|.. -|.-.-..-+|++.--+... -+.|-....|-...|.||- T Consensus 90 ~~~~~~~V~~DN~~~--~~~~---~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 147 (151) T 3gyb_A 90 TQASTHDSVANDSIG--VGYN---AALLLLSXLDPEAPHPEIXH--TLQPSLIERGTCAPREGHH 147 (151) T ss_dssp SSSCSTTEEEECHHH--HHHH---HHHHHHHHHCTTSCCCCCCS--EECCEEECCSSCCCC---- T ss_pred CCCCCCCCCCHHHHH--HHHH---HHHHHHHHHCCCCCCCCEEE--EECCEEEECCCCCCCCCCC T ss_conf 887665532114999--9999---99999999639999984489--9675899447899999988 No 10 >>2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal- kingston bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori 26695} (A:10-247) Probab=58.47 E-value=15 Score=18.07 Aligned_cols=60 Identities=7% Similarity=0.076 Sum_probs=30.5 Q ss_pred HHHHHHHHHHHCCCEEEEEECCC------------CCCCCCEEEEHHHCCHHHHHHHHHHCCCCEEEECCHH Q ss_conf 66999999996898299996778------------9887013348445999999999970899458614689 Q gi|254780359|r 10 RYIEDVIQSFQKGEMVIVTDADD------------RENEADLVLAAIHCTSEKMAFIIRHTCGIVCTPMPFH 69 (210) Q Consensus 10 ~~ie~ai~al~~G~~Viv~D~~d------------REnEgDlv~~Ae~vt~e~i~fm~~~~~Glic~al~~~ 69 (210) ..+++.+..+-.++.++++-+-- .-++||.|+.-...-+.....+..++...+.+..... T Consensus 26 ~~l~~~la~~~~~~~~v~~~sgt~a~~~~~~~~~~~~~~~d~vi~~~~~~~~~~~~~~~~g~~~~~v~~~~~ 97 (238) T 2fnu_A 26 LLFEEALCEFLGVKHALVFNSATSALLTLYRNFSEFSADRNEIITTPISFVATANMLLESGYTPVFAGIKND 97 (238) T ss_dssp HHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHSSCCCTTSCEEEECSSSCTHHHHHHHHTTCEEEECCBCTT T ss_pred HHHHHHHHHHHCCCEEEEEECHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCCEECCCCCCCCCCCCCC T ss_conf 999999999978195999816899999999985545799770521134432120000036874222433333 No 11 >>3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, cytoplasm, one-carbon metabolism, pyridoxal phosphate; 1.60A {Burkholderia pseudomallei} (A:42-284) Probab=56.56 E-value=12 Score=18.52 Aligned_cols=42 Identities=5% Similarity=-0.074 Sum_probs=34.1 Q ss_pred HHHHCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHCCCEEE Q ss_conf 988769960059888536887505989999999983890777 Q gi|254780359|r 156 LCKITGLPPIAVICELVNDDGTIKKGKQVIEFSKKYDLKIIS 197 (210) Q Consensus 156 L~~lAGl~P~~vi~Eil~~~G~~~~~~~~~~fA~~~~lp~i~ 197 (210) |.+.-.-....|+..-.+..|...+.+++.++|++||++++- T Consensus 123 l~~~i~~~t~~v~~~~~s~~g~~~~l~~i~~la~~~g~~~~v 164 (243) T 3ecd_A 123 VEALAQQHKPSLIIAGFSAYPRKLDFARFRAIADSVGAKLMV 164 (243) T ss_dssp HHHHHHHHCCSEEEEECSCCCSCCCHHHHHHHHHHHTCEEEE T ss_pred HHHHHHHHCCCEEEECCCCCCCCCCHHHHHHHHHHHCCEEEC T ss_conf 999999738776874453455546689998765432330421 No 12 >>1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} (A:1-260) Probab=56.46 E-value=15 Score=18.05 Aligned_cols=42 Identities=10% Similarity=0.065 Sum_probs=31.6 Q ss_pred HHHHCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHCCCEEE Q ss_conf 988769960059888536887505989999999983890777 Q gi|254780359|r 156 LCKITGLPPIAVICELVNDDGTIKKGKQVIEFSKKYDLKIIS 197 (210) Q Consensus 156 L~~lAGl~P~~vi~Eil~~~G~~~~~~~~~~fA~~~~lp~i~ 197 (210) +..+..-++..+++.+-+..|.....+++.++|++||++++- T Consensus 144 ~~~~~~~~~~v~v~~~~~~~G~~~~l~~i~~la~~~g~~l~v 185 (260) T 1gc0_A 144 EAAMTPATRVIYFESPANPNMHMADIAGVAKIARKHGATVVV 185 (260) T ss_dssp HHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHGGGTCEEEE T ss_pred HHHCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHCCCCEEE T ss_conf 986587761899946788665655769999999981992884 No 13 >>1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} (A:1-250) Probab=52.79 E-value=15 Score=17.99 Aligned_cols=35 Identities=11% Similarity=0.194 Sum_probs=19.7 Q ss_pred CCCEEEEEEEECCCCCCCCHHHHHHHHHHHCCCEE Q ss_conf 96005988853688750598999999998389077 Q gi|254780359|r 162 LPPIAVICELVNDDGTIKKGKQVIEFSKKYDLKII 196 (210) Q Consensus 162 l~P~~vi~Eil~~~G~~~~~~~~~~fA~~~~lp~i 196 (210) ..+..+++...+..|...+.+++.++|++|++++| T Consensus 123 ~~~~~~~~~p~~~~g~~~~l~~i~~~a~~~~~~li 157 (250) T 1b9h_A 123 VTPRTKVIMPVHMAGLMADMDALAKISADTGVPLL 157 (250) T ss_dssp CCTTEEEECCBCGGGCCCCHHHHHHHHHHHTCCBC T ss_pred CCCCCCCCEEEECCCCCCCCCCCHHHCHHHCHHHC T ss_conf 12332011000011113443100000000000000 No 14 >>3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum} (A:8-244) Probab=52.43 E-value=18 Score=17.46 Aligned_cols=19 Identities=11% Similarity=0.073 Sum_probs=8.8 Q ss_pred HHHHHHHHHHCCCEEEEEE Q ss_conf 6999999996898299996 Q gi|254780359|r 11 YIEDVIQSFQKGEMVIVTD 29 (210) Q Consensus 11 ~ie~ai~al~~G~~Viv~D 29 (210) .+++++..+-..+-++++- T Consensus 33 ~l~~~la~~~~~~~~i~~~ 51 (237) T 3frk_A 33 KFEQEFADYCNVNYCIGCG 51 (237) T ss_dssp HHHHHHHHHHTSSEEEEES T ss_pred HHHHHHHHHHCCCEEEEEC T ss_conf 9999999986959799956 No 15 >>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, sugar binding protein, structural genomics; 2.05A {Burkholderia phymatum STM815} (A:1-110,A:244-265) Probab=50.82 E-value=13 Score=18.45 Aligned_cols=95 Identities=14% Similarity=0.081 Sum_probs=47.8 Q ss_pred HHHHHHHH-HHH-HCCCEEEEEECCCCCCCCCEEEEHHHCCHHHHH-HHHHHCCCCEEEEC--CHHH---HHHHHCCCCC Q ss_conf 56699999-999-689829999677898870133484459999999-99970899458614--6899---9874036432 Q gi|254780359|r 9 ERYIEDVI-QSF-QKGEMVIVTDADDRENEADLVLAAIHCTSEKMA-FIIRHTCGIVCTPM--PFHT---AHKLKLNPMV 80 (210) Q Consensus 9 ~~~ie~ai-~al-~~G~~Viv~D~~dREnEgDlv~~Ae~vt~e~i~-fm~~~~~Glic~al--~~~~---~~~L~Lp~m~ 80 (210) +..+-+.+ +++ +.|--+++....+.+.... --.+.+. +..+...|+|..+. +... +.+-++|... T Consensus 23 ~~~ii~gi~~~a~~~gy~lii~~~~~~~~~~~-------~~~~~i~~l~~~~vDGiIi~~~~~~~~~i~~l~~~~IPvV~ 95 (132) T 2rgy_A 23 YGTILKQTDLELRAVHRHVVVATGCGESTPRE-------QALEAVRFLIGRDCDGVVVISHDLHDEDLDELHRXHPKXVF 95 (132) T ss_dssp HHHHHHHHHHHHHHTTCEEEEECCCSSSCHHH-------HHHHHHHHHHHTTCSEEEECCSSSCHHHHHHHHHHCSSEEE T ss_pred HHHHHHHHHHHHHHCCCEEEEEECCCCCCCHH-------HHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCCCEE T ss_conf 99999999999998699799996889864199-------99999999985699989852232104789987403764203 Q ss_pred CCCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHH Q ss_conf 4456656652178872034777899988999999999842 Q gi|254780359|r 81 LENESVHKTAFTVSVDSKHGITTGISADDRAYTIKNLANP 120 (210) Q Consensus 81 ~~n~~~~~taFtvsvd~~~g~tTGISa~DRa~TIr~la~~ 120 (210) .... ......+|.+|..+- | -..+|.|.+. T Consensus 96 id~~-~~~~~~~V~~D~~~~-~--------~~~~~~~~~~ 125 (132) T 2rgy_A 96 LNRA-FDALPDASFCPTAEL-T--------QNAVRWLINQ 125 (132) T ss_dssp ESSC-CTTSGGGEECCHHHH-H--------HHHHHHHHHH T ss_pred EEEC-CCCCCCCCCCCHHHH-H--------HHHHHHHHHH T ss_conf 5203-432234420359999-9--------9999999998 No 16 >>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent enzyme, lyase, cytoplasm, acid resistance; HET: LLP; 2.4A {Escherichia coli} (A:140-440) Probab=50.70 E-value=13 Score=18.39 Aligned_cols=48 Identities=13% Similarity=0.118 Sum_probs=34.3 Q ss_pred HHHHHHHHHCC----CCCEEEEEEEECCCCCCCCHHHHHHHHHHHCCCEEEH Q ss_conf 67769988769----9600598885368875059899999999838907779 Q gi|254780359|r 151 EASVDLCKITG----LPPIAVICELVNDDGTIKKGKQVIEFSKKYDLKIISV 198 (210) Q Consensus 151 EaavdL~~lAG----l~P~~vi~Eil~~~G~~~~~~~~~~fA~~~~lp~i~i 198 (210) |..++..+.+. -+++.++|-.-+..|..++.+++.++|++|++.++.- T Consensus 157 e~~l~~~~~~~~~~~~~~~~~~~~p~np~G~~~~~~~i~~ia~~~~~~~i~D 208 (301) T 2vyc_A 157 QKKISESPLTKDKAGQKPSYCVVTNCTYDGVCYNAKEAQDLLEKTSDRLHFD 208 (301) T ss_dssp HHHHHHCTTTGGGTTCCCSCEEEESSCTTSEEECHHHHHHHHTTTCSEEEEE T ss_pred HHHHHHCHHHHHHCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHCCCEEEEE T ss_conf 9998759243553347870899968877862148999999997639939994 No 17 >>1c4k_A Protein (ornithine decarboxylase); HET: PLP GTP; 2.70A {Lactobacillus SP} (A:109-414) Probab=48.33 E-value=21 Score=17.06 Aligned_cols=45 Identities=20% Similarity=0.059 Sum_probs=34.1 Q ss_pred HHHHHHHCCCCCEEEEEEE-ECCCCCCCCHHHHHHHHHHHCCCEEE Q ss_conf 7699887699600598885-36887505989999999983890777 Q gi|254780359|r 153 SVDLCKITGLPPIAVICEL-VNDDGTIKKGKQVIEFSKKYDLKIIS 197 (210) Q Consensus 153 avdL~~lAGl~P~~vi~Ei-l~~~G~~~~~~~~~~fA~~~~lp~i~ 197 (210) ..++.++..-.+..++++- -+..|.....+++.++|++|+++++. T Consensus 162 ~~~~~~~~~~~t~~i~~~~~~~~~G~~~~l~~i~~la~~~~~~~i~ 207 (306) T 1c4k_A 162 KVDPERAKWKRPFRLAVIQLGTYDGTIYNAHEVVKRIGHLCDYIEF 207 (306) T ss_dssp TSSHHHHTCSCCBSEEEEESBCTTSEEECHHHHHHHHGGGBSEEEE T ss_pred CCCHHHHHCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHCCCEEEE T ss_conf 1487666224885289996688876635999999999752998999 No 18 >>1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} (A:17-259) Probab=47.33 E-value=19 Score=17.40 Aligned_cols=57 Identities=11% Similarity=0.102 Sum_probs=24.2 Q ss_pred HHHHHHHHHHHCCCEEEEEECC----------CCCCCCCEEEEHHHCCHHHHHHHHHHCCCCEEEEC Q ss_conf 6699999999689829999677----------89887013348445999999999970899458614 Q gi|254780359|r 10 RYIEDVIQSFQKGEMVIVTDAD----------DRENEADLVLAAIHCTSEKMAFIIRHTCGIVCTPM 66 (210) Q Consensus 10 ~~ie~ai~al~~G~~Viv~D~~----------dREnEgDlv~~Ae~vt~e~i~fm~~~~~Glic~al 66 (210) ..+++.+.++-.++-.+++-+- -.-..||.|+.-.-.-+.....+...+.-.+.+.+ T Consensus 26 ~~l~~~~~~~~g~e~~i~~~sGt~a~~~~~~~~~~~~Gd~Vl~~~~~~~~~~~~~~~~g~~~v~~~~ 92 (243) T 1mdo_A 26 QELEAAFCRLTGNQYAVAVSSATAGXHIALXALGIGEGDEVITPSXTWVSTLNXIVLLGANPVXVDV 92 (243) T ss_dssp HHHHHHHHHHHCCSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCHHHHHHHHHTTCEEEEECB T ss_pred HHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHCCCCCCCEEECCCCEEHHHHHHHHHCCCEEEEECC T ss_conf 9999999999782959996788999999999819999898957996403310365335988899414 No 19 >>2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae} (A:28-260) Probab=46.57 E-value=23 Score=16.88 Aligned_cols=23 Identities=13% Similarity=0.107 Sum_probs=8.4 Q ss_pred CCCCCCCCHHHHHHHHHHHCCCE Q ss_conf 68875059899999999838907 Q gi|254780359|r 173 NDDGTIKKGKQVIEFSKKYDLKI 195 (210) Q Consensus 173 ~~~G~~~~~~~~~~fA~~~~lp~ 195 (210) +..|.+...+++.++|++||+++ T Consensus 119 ~~~g~~~~~~~i~~~a~~~g~~l 141 (233) T 2po3_A 119 HLWGRPCAADQLRKVADEHGLRL 141 (233) T ss_dssp CGGGCCCCHHHHHHHHHHTTCEE T ss_pred CCCCCCCCCCCHHHHHHCCCCCC T ss_conf 35686533330011221157240 No 20 >>3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A* (A:1-267) Probab=46.34 E-value=23 Score=16.86 Aligned_cols=39 Identities=18% Similarity=0.194 Sum_probs=24.5 Q ss_pred HCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHCCCEEE Q ss_conf 769960059888536887505989999999983890777 Q gi|254780359|r 159 ITGLPPIAVICELVNDDGTIKKGKQVIEFSKKYDLKIIS 197 (210) Q Consensus 159 lAGl~P~~vi~Eil~~~G~~~~~~~~~~fA~~~~lp~i~ 197 (210) .....+..+++-.-+..|...+.+++.+++++||++++. T Consensus 138 ~~~~~~~~~~~~~~np~g~~~~~~~i~~~~~~~g~~iiv 176 (267) T 3dr4_A 138 EALITPRTKAIMPVHLYGQICDMDPILEVARRHNLLVIE 176 (267) T ss_dssp GGGCCTTEEEECCBCGGGCCCCHHHHHHHHHHTTCEEEE T ss_pred HHHCCCCCCEEEEECCCCCHHCHHHHHHHHHHCCCEEEE T ss_conf 984589981999979877710799999999984999999 No 21 >>2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus} (A:1-277) Probab=46.18 E-value=23 Score=16.85 Aligned_cols=39 Identities=3% Similarity=0.097 Sum_probs=20.3 Q ss_pred HHCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHCCCEE Q ss_conf 876996005988853688750598999999998389077 Q gi|254780359|r 158 KITGLPPIAVICELVNDDGTIKKGKQVIEFSKKYDLKII 196 (210) Q Consensus 158 ~lAGl~P~~vi~Eil~~~G~~~~~~~~~~fA~~~~lp~i 196 (210) ++..-++..+++-.-+..|.+...+++.++|++||++++ T Consensus 136 ~i~~~t~~i~i~~~~~~~g~~~di~~i~~~a~~~g~~li 174 (277) T 2cb1_A 136 ALSAKTRAVFVETVANPALLVPDLEALATLAEEAGVALV 174 (277) T ss_dssp HCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEE T ss_pred HHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCEE T ss_conf 754486399998788644444418888777776055514 No 22 >>2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* 2vmr_A* 2vms_A* 2vmt_A* 2vmu_A* 2vmq_A* ... (A:33-275) Probab=45.85 E-value=21 Score=17.09 Aligned_cols=43 Identities=12% Similarity=0.040 Sum_probs=34.7 Q ss_pred HHHHHCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHCCCEEE Q ss_conf 9988769960059888536887505989999999983890777 Q gi|254780359|r 155 DLCKITGLPPIAVICELVNDDGTIKKGKQVIEFSKKYDLKIIS 197 (210) Q Consensus 155 dL~~lAGl~P~~vi~Eil~~~G~~~~~~~~~~fA~~~~lp~i~ 197 (210) +|.++..-.+.++++-..+..|...+.+++.++|++||++++- T Consensus 122 ~l~~~i~~~~~~~~~~~~~~~G~~~dl~~i~~ia~~~g~~~~v 164 (243) T 2vi8_A 122 DVREKARLHRPKLIVAAAAAYPRIIDFAKFREIADEVGAYLMV 164 (243) T ss_dssp HHHHHHHHHCCSEEEECCSSCCSCCCHHHHHHHHHHHTCEEEE T ss_pred HHHHHHHHHCCCEEEECCCCCCCCCCHHHHHHHHHHHCCEEEH T ss_conf 9999998625634653134678766899999877651959873 No 23 >>1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} (A:) Probab=45.62 E-value=23 Score=16.88 Aligned_cols=18 Identities=6% Similarity=-0.036 Sum_probs=7.0 Q ss_pred CCHHHHHHHHHHCCCCEE Q ss_conf 999999999970899458 Q gi|254780359|r 46 CTSEKMAFIIRHTCGIVC 63 (210) Q Consensus 46 vt~e~i~fm~~~~~Glic 63 (210) .+++.+.-.++.....++ T Consensus 107 ~~~~~le~~l~~~~~~v~ 124 (394) T 1o69_A 107 IDVDLLKLAIKECEKKPK 124 (394) T ss_dssp BCHHHHHHHHHHCSSCCC T ss_pred CCHHHHHHHHHHCCCCCE T ss_conf 220335555410356867 No 24 >>1w96_A ACC, acetyl-coenzyme A carboxylase; ligase, obesity, diabetes, fatty acid metabolism, structure-based drug design; HET: S1A; 1.8A {Saccharomyces cerevisiae} (A:217-282) Probab=43.37 E-value=19 Score=17.34 Aligned_cols=17 Identities=6% Similarity=0.235 Sum_probs=7.4 Q ss_pred CHHHHHHHHHHHCCCEE Q ss_conf 98999999998389077 Q gi|254780359|r 180 KGKQVIEFSKKYDLKII 196 (210) Q Consensus 180 ~~~~~~~fA~~~~lp~i 196 (210) +.+++.+|++++++|+| T Consensus 6 ~~~~~~~~~~~ig~PvV 22 (66) T 1w96_A 6 SPEDGLQKAKRIGFPVM 22 (66) T ss_dssp SHHHHHHHHHHHCSSEE T ss_pred CHHHHHHHHHHCCCCEE T ss_conf 99999999985698789 No 25 >>3jsz_A LGT1, putative uncharacterized protein; glucosyltransferase, legionnaire'S disease; HET: MSE UPG; 1.70A {Legionella pneumophila} PDB: 2wzg_A* 3jt1_A* 2wzf_A* (A:110-328,A:442-525) Probab=41.17 E-value=14 Score=18.24 Aligned_cols=12 Identities=8% Similarity=-0.147 Sum_probs=5.1 Q ss_pred HHHCCHHHHHHH Q ss_conf 445999999999 Q gi|254780359|r 43 AIHCTSEKMAFI 54 (210) Q Consensus 43 Ae~vt~e~i~fm 54 (210) ....+++.++.+ T Consensus 65 St~Ln~~a~~ql 76 (303) T 3jsz_A 65 SSLLNPEANRQX 76 (303) T ss_dssp STTSCHHHHHHH T ss_pred HHHCCHHHHHHH T ss_conf 132388999999 No 26 >>3iuu_A MLRC-like, putative metallopeptidase; YP_676511.1, structural genomics, joint center for structural genomics, JCSG; HET: PGE; 2.13A {Mesorhizobium SP} (A:276-472) Probab=40.28 E-value=22 Score=16.92 Aligned_cols=47 Identities=15% Similarity=0.178 Sum_probs=28.9 Q ss_pred HHHHHHHHHH-HHCCCEEEEEECCCCCCCCCEEEEHHHCCHHHHHHHHHHCCC Q ss_conf 5669999999-968982999967789887013348445999999999970899 Q gi|254780359|r 9 ERYIEDVIQS-FQKGEMVIVTDADDRENEADLVLAAIHCTSEKMAFIIRHTCG 60 (210) Q Consensus 9 ~~~ie~ai~a-l~~G~~Viv~D~~dREnEgDlv~~Ae~vt~e~i~fm~~~~~G 60 (210) +.++++||+. +..++||+|.|..|.-+-|- +. =++..+..|+++.-. T Consensus 3 ~~~~~eAi~~A~~~~~PvvlaD~~DNpg~G~----~g-D~T~iL~~lL~~~~~ 50 (197) T 3iuu_A 3 LXSVDKALEIARTSRQLLALGDQGDRVXGAG----PG-DSPEIARVALEHFPG 50 (197) T ss_dssp CBCHHHHHHHHHTCSSEEEEEEGGGCGGGTC----CC-CCCHHHHHHHHHCTT T ss_pred CCCHHHHHHHHHCCCCCEEECCCCCCCCCCC----CC-CCHHHHHHHHHCCCC T ss_conf 6434568887523688556256788766675----42-008999999844777 No 27 >>1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} (A:1-251) Probab=39.02 E-value=29 Score=16.16 Aligned_cols=70 Identities=17% Similarity=-0.026 Sum_probs=43.3 Q ss_pred HHCCCCCCCEEEECC--CCCCCCCCHHHHHHHHHHHCCCCCEEEEEEEE-CCCCCCCCHHHHHHHHHHHCCCEE Q ss_conf 313898500100126--98246678026776998876996005988853-688750598999999998389077 Q gi|254780359|r 126 NFVRPGHIFPLISRD--GGVLVRPGHTEASVDLCKITGLPPIAVICELV-NDDGTIKKGKQVIEFSKKYDLKII 196 (210) Q Consensus 126 df~~PGHV~pL~a~~--gGvl~R~GHTEaavdL~~lAGl~P~~vi~Eil-~~~G~~~~~~~~~~fA~~~~lp~i 196 (210) ++..|+++.++.... .++....+.+ -..++.++..-.+..++++.. +..|.+++.+++.++|++|+++++ T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~t~~v~~~~~~~~~g~~~dl~~i~~la~~~g~~~i 172 (251) T 1n8p_A 100 GDVYGGTHRYFTKVANAHGVETSFTND-LLNDLPQLIKENTKLVWIETPTNPTLKVTDIQKVADLIKKHAAGQD 172 (251) T ss_dssp SSCCHHHHHHHHHTSTTTCSCCEEESS-HHHHHHHHSCSSEEEEEECSSCTTTCCCCCHHHHHHHHHHHTTTTT T ss_pred ECCCCCCHHHHHHHHHCCCEEEEEEEC-CHHHHHHHHCCCCEEEEECCCCCCCCEECCHHHHHHHHHHCCCCCC T ss_conf 045565213444444117449999835-8689998737786089921689954442334665655431123578 No 28 >>1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} (A:1-246) Probab=38.09 E-value=30 Score=16.07 Aligned_cols=42 Identities=12% Similarity=0.045 Sum_probs=31.2 Q ss_pred HHHHCCCCCEEEEEEEE-CCCCCCCCHHHHHHHHHHHCCCEEE Q ss_conf 98876996005988853-6887505989999999983890777 Q gi|254780359|r 156 LCKITGLPPIAVICELV-NDDGTIKKGKQVIEFSKKYDLKIIS 197 (210) Q Consensus 156 L~~lAGl~P~~vi~Eil-~~~G~~~~~~~~~~fA~~~~lp~i~ 197 (210) +.+...-.+-.+++|.+ +..|+..+.+.+.+.|++||++++- T Consensus 130 i~~~i~~~t~~i~~~~~~~~~g~~~Di~~i~~ia~~~g~~li~ 172 (246) T 1cs1_A 130 LRAALAEKPKLVLVESPSNPLLRVVDIAKICHLAREVGAVSVV 172 (246) T ss_dssp HHHHHHTCCSEEEEECSCTTTCCCCCHHHHHHHHHHTTCEEEE T ss_pred HHHHCCCCCCEEEEECCCCCCCEECCHHHHHHHHHHCCCEEEE T ss_conf 8751276662799714565531004579886666524866997 No 29 >>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, pyridoxal phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum} (A:81-271) Probab=35.71 E-value=33 Score=15.83 Aligned_cols=31 Identities=10% Similarity=0.258 Sum_probs=14.8 Q ss_pred EEEEEEECCCCCCCCHHHHHHHHHHHCCCEE Q ss_conf 5988853688750598999999998389077 Q gi|254780359|r 166 AVICELVNDDGTIKKGKQVIEFSKKYDLKII 196 (210) Q Consensus 166 ~vi~Eil~~~G~~~~~~~~~~fA~~~~lp~i 196 (210) .+++..-+..|.....+++.+++++|+++++ T Consensus 97 ~~~~~~~~~~g~~~dl~~i~~~~~~~~~~li 127 (191) T 3a2b_A 97 ICTDGIFSMEGDIVNLPELTSIANEFDAAVM 127 (191) T ss_dssp EEEESBCTTTCCBCCHHHHHHHHHHHTCEEE T ss_pred EEECCCCCCCCCCCCHHHHHHHHHHHCEEEE T ss_conf 8713666898876479999999997294899 No 30 >>3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} PDB: 3bs8_A* (A:108-293) Probab=35.58 E-value=33 Score=15.82 Aligned_cols=62 Identities=15% Similarity=-0.004 Sum_probs=46.1 Q ss_pred EEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEEEECCCCCCC-----CHHHHHHHHHHHCCCEEE Q ss_conf 00126982466780267769988769960059888536887505-----989999999983890777 Q gi|254780359|r 136 LISRDGGVLVRPGHTEASVDLCKITGLPPIAVICELVNDDGTIK-----KGKQVIEFSKKYDLKIIS 197 (210) Q Consensus 136 L~a~~gGvl~R~GHTEaavdL~~lAGl~P~~vi~Eil~~~G~~~-----~~~~~~~fA~~~~lp~i~ 197 (210) ..-.+.....+....+..-++.+.-+-..+++|+|-+...|.+. =...+.+.+++|++++|- T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~i~EPiqg~gG~~~~~~~fl~~lr~lc~~~g~llI~ 132 (186) T 3k28_A 66 EGVAKNTITVAYNDLESVKYAFEQFGDDIACVIVEPVAGNXGVVPPQPGFLEGLREVTEQNGALLIF 132 (186) T ss_dssp HHHHTTEEEEETTCHHHHHHHHHHHGGGEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEE T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEE T ss_conf 8757776430122487767899854886438997731378886578989999999999982989998 No 31 >>1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfuration; HET: PLP; 2.30A {Arabidopsis thaliana} (A:1-326) Probab=34.02 E-value=35 Score=15.66 Aligned_cols=47 Identities=11% Similarity=0.066 Sum_probs=35.5 Q ss_pred HHHHHHHHHCCCCCEEEEEEEEC-CCCCCCCHHHHHHHHHHHCCCEEE Q ss_conf 67769988769960059888536-887505989999999983890777 Q gi|254780359|r 151 EASVDLCKITGLPPIAVICELVN-DDGTIKKGKQVIEFSKKYDLKIIS 197 (210) Q Consensus 151 EaavdL~~lAGl~P~~vi~Eil~-~~G~~~~~~~~~~fA~~~~lp~i~ 197 (210) .-.-+|...-.-....|+++-++ ..|.....+++.++|++||++++- T Consensus 205 ~d~~~l~~ai~~~t~lV~~~~~~n~~G~~~di~~i~~~a~~~g~~viv 252 (326) T 1ibj_A 205 TKLDEVAAAIGPQTKLVWLESPTNPRQQISDIRKISEMAHAQGALVLV 252 (326) T ss_dssp TSHHHHHHHCCSSEEEEEECSSCTTTCCCCCHHHHHHHHHTTTCEEEE T ss_pred CCHHHHHHCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHCCCCCEEEE T ss_conf 113566640376714999658898644446668999874226513998 No 32 >>2jya_A AGR_C_3324P, uncharacterized protein ATU1810; protein with unknown function ATU1810, ontario centre for structural proteomics; NMR {Agrobacterium tumefaciens str} (A:) Probab=32.35 E-value=35 Score=15.70 Aligned_cols=19 Identities=5% Similarity=0.209 Sum_probs=14.3 Q ss_pred CHHHHHHHHHHHCCCEEEH Q ss_conf 9899999999838907779 Q gi|254780359|r 180 KGKQVIEFSKKYDLKIISV 198 (210) Q Consensus 180 ~~~~~~~fA~~~~lp~i~i 198 (210) +.++++.||++||+++.-. T Consensus 60 skE~AIayaek~G~~y~V~ 78 (106) T 2jya_A 60 TQEQAEAYAQRKGIEYRVI 78 (106) T ss_dssp SHHHHHHHHHHHTCEEEEC T ss_pred CHHHHHHHHHHCCCEEEEE T ss_conf 9999999999879659998 No 33 >>2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} (A:64-329) Probab=32.22 E-value=38 Score=15.48 Aligned_cols=36 Identities=8% Similarity=0.030 Sum_probs=29.6 Q ss_pred CCCEEEEEEEECCCCCCCCHHHHHHHHHHHCCCEEE Q ss_conf 960059888536887505989999999983890777 Q gi|254780359|r 162 LPPIAVICELVNDDGTIKKGKQVIEFSKKYDLKIIS 197 (210) Q Consensus 162 l~P~~vi~Eil~~~G~~~~~~~~~~fA~~~~lp~i~ 197 (210) -....+++-..+..|...+.+++.+.+++||++++. T Consensus 138 ~~t~~~i~~~~~~~G~~~~l~~I~~la~~~g~~v~~ 173 (266) T 2a7v_A 138 LFRPRLIIAGTSAYARLIDYARMREVCDEVKAHLLA 173 (266) T ss_dssp HHCCSEEEECCSSCCSCCCHHHHHHHHHHTTCEEEE T ss_pred HHCCCEEEECCCCCCCCCCHHHHHHHHHCCCCEEEE T ss_conf 407765884320033446689999887404761882 No 34 >>2vpq_A Acetyl-COA carboxylase; bacteria, ATP-grAsp domain, biotin carboxylase, ligase; HET: ANP; 2.1A {Staphylococcus aureus} (A:133-202) Probab=32.16 E-value=38 Score=15.47 Aligned_cols=16 Identities=13% Similarity=0.181 Sum_probs=6.0 Q ss_pred CHHHHHHHHHHHCCCE Q ss_conf 9899999999838907 Q gi|254780359|r 180 KGKQVIEFSKKYDLKI 195 (210) Q Consensus 180 ~~~~~~~fA~~~~lp~ 195 (210) +.+++.+|+++.|+|+ T Consensus 7 s~ee~~~~~~~iG~Pv 22 (70) T 2vpq_A 7 DVSEAKKIAKKIGYPV 22 (70) T ss_dssp CHHHHHHHHHHHCSSE T ss_pred CHHHHHHHHHHCCCCE T ss_conf 9999999999739958 No 35 >>2uvp_A HOBA; hypothetical protein, unknown function, DNAA, SIS fold, DNA replication; 1.7A {Helicobacter pylori} PDB: 2uvp_B (A:34-186) Probab=31.09 E-value=38 Score=15.47 Aligned_cols=25 Identities=20% Similarity=0.322 Sum_probs=21.7 Q ss_pred HHHHHHHHHHCCCEEEEEECCCCCC Q ss_conf 6999999996898299996778988 Q gi|254780359|r 11 YIEDVIQSFQKGEMVIVTDADDREN 35 (210) Q Consensus 11 ~ie~ai~al~~G~~Viv~D~~dREn 35 (210) -+..+|+.+-+|+-+||.-|++||= T Consensus 9 L~a~~l~~ll~G~s~iviTD~~R~W 33 (153) T 2uvp_A 9 LIAQTISHVLNGGSLLVSADSSRHW 33 (153) T ss_dssp HHHHHHHHHHTTCEEEEEECGGGHH T ss_pred HHHHHHHHHHCCCEEEEEECCCHHH T ss_conf 9999999985797699996871778 No 36 >>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural genomics, protein structure initiative, PSI; 1.75A {Escherichia coli O157} (A:189-210,A:255-260,A:317-351) Probab=30.38 E-value=6.5 Score=20.29 Aligned_cols=26 Identities=19% Similarity=0.031 Sum_probs=22.4 Q ss_pred HHHHHHHHHHHHHHCCHHHHCCCCCC Q ss_conf 89999999998420132431389850 Q gi|254780359|r 108 DDRAYTIKNLANPHSIADNFVRPGHI 133 (210) Q Consensus 108 ~DRa~TIr~la~~~~~~~df~~PGHV 133 (210) .+|..|+|+++....+|++|.-+|-. T Consensus 27 ~~R~LTvRE~aRLQGFPDdf~f~gs~ 52 (63) T 3g7u_A 27 LHRVITPREAARLQGFPDWFRFHVTK 52 (63) T ss_dssp CCSBCCHHHHHHHHTCCTTCCCCSSH T ss_pred CCCCCCHHHHHHHCCCCCCCEECCCH T ss_conf 54588899999978799996869798 No 37 >>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} (A:689-756) Probab=29.23 E-value=41 Score=15.23 Aligned_cols=15 Identities=13% Similarity=0.142 Sum_probs=5.7 Q ss_pred HHHHHHHHHHHCCCE Q ss_conf 899999999838907 Q gi|254780359|r 181 GKQVIEFSKKYDLKI 195 (210) Q Consensus 181 ~~~~~~fA~~~~lp~ 195 (210) .+++.+|++++|+|+ T Consensus 10 ~~e~~~~~~~~g~Pv 24 (68) T 1a9x_A 10 IEMAVEKAKEIGYPL 24 (68) T ss_dssp HHHHHHHHHHHCSSE T ss_pred CHHHHHHHHHCCCCE T ss_conf 047789998659766 No 38 >>3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; X-RAY, aspartate aminotransferase, colitose, perosamine, O- antigen, PLP; HET: G4M; 1.70A {Escherichia coli O55} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A* (A:) Probab=28.67 E-value=43 Score=15.10 Aligned_cols=61 Identities=7% Similarity=0.033 Sum_probs=44.1 Q ss_pred HHHHHHHHHHHHCCCEEEEEECC----------------CCCCCCCEEEEHHHCCHHHHHHHHHHCCCCEEEECCHH Q ss_conf 56699999999689829999677----------------89887013348445999999999970899458614689 Q gi|254780359|r 9 ERYIEDVIQSFQKGEMVIVTDAD----------------DRENEADLVLAAIHCTSEKMAFIIRHTCGIVCTPMPFH 69 (210) Q Consensus 9 ~~~ie~ai~al~~G~~Viv~D~~----------------dREnEgDlv~~Ae~vt~e~i~fm~~~~~Glic~al~~~ 69 (210) ...+++.|..+-..+.++++.+. ..-+.||-|+-....-+..+..+...+.-.+.++.+.+ T Consensus 36 ~~~l~~~ia~~~g~~~~v~~~sgt~a~~~a~~al~~~~~~~~~~Gd~Vi~~~~~~~~~~~~~~~~g~~~v~~~~~~~ 112 (390) T 3b8x_A 36 VKQYETQFAKTFGSKYAVMVSSGSTANLLMIAALFFTKKPRLKKGDEIIVPAVSWSTTYYPLQQYGLRVKFVDIDIN 112 (390) T ss_dssp HHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHTTSSSSCSCCTTCEEEEESSSCHHHHHHHHHTTCEEEEECBCTT T ss_pred HHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHCCCCCCCCCCCCC T ss_conf 99999999999785927998477999999999986557508899973102023342402334403432221344555 No 39 >>2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A* (A:39-271) Probab=28.11 E-value=44 Score=15.04 Aligned_cols=25 Identities=20% Similarity=0.232 Sum_probs=9.6 Q ss_pred ECCCCCCCCHHHHHHHHHHHCCCEE Q ss_conf 3688750598999999998389077 Q gi|254780359|r 172 VNDDGTIKKGKQVIEFSKKYDLKII 196 (210) Q Consensus 172 l~~~G~~~~~~~~~~fA~~~~lp~i 196 (210) .+..|+.++.+++.+++++||++++ T Consensus 120 ~~~~g~~~~~~~i~~~a~~~~~~ii 144 (233) T 2oga_A 120 VHLYGHPADMDALRELADRHGLHIV 144 (233) T ss_dssp BCGGGCCCCHHHHHHHHHHHTCEEC T ss_pred EECCCCCCCHHHHHHHHHHCCCEEE T ss_conf 6358864524478887776096035 No 40 >>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structural genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* (A:1-137,A:202-246) Probab=28.10 E-value=44 Score=15.04 Aligned_cols=33 Identities=15% Similarity=0.342 Sum_probs=17.0 Q ss_pred EECCCCCCCCHHHHHHHHHHHCCCEEEHHHHHHH Q ss_conf 5368875059899999999838907779999999 Q gi|254780359|r 171 LVNDDGTIKKGKQVIEFSKKYDLKIISVQDLIAW 204 (210) Q Consensus 171 il~~~G~~~~~~~~~~fA~~~~lp~i~i~dli~y 204 (210) ++...|. -+...+..+|++++++.|+..||++- T Consensus 32 IiGpPGS-GKsT~a~~La~~ygl~hIs~gdllR~ 64 (182) T 2bbw_A 32 ILGPPGS-GKGTVCQRIAQNFGLQHLSSGHFLRE 64 (182) T ss_dssp EECCTTS-SHHHHHHHHHHHHCCCCEEHHHHHHH T ss_pred EECCCCC-CHHHHHHHHHHHHCCEEECHHHHHHH T ss_conf 9899999-87999999999879888748999999 No 41 >>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} (A:1-119) Probab=27.77 E-value=35 Score=15.67 Aligned_cols=65 Identities=20% Similarity=0.283 Sum_probs=50.4 Q ss_pred CCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHCCCEEE Q ss_conf 3898500100126982466780267769988769960059888536887505989999999983890777 Q gi|254780359|r 128 VRPGHIFPLISRDGGVLVRPGHTEASVDLCKITGLPPIAVICELVNDDGTIKKGKQVIEFSKKYDLKIIS 197 (210) Q Consensus 128 ~~PGHV~pL~a~~gGvl~R~GHTEaavdL~~lAGl~P~~vi~Eil~~~G~~~~~~~~~~fA~~~~lp~i~ 197 (210) ..|..|..+-..+-..+.+-+..+..-.|-++....|.++|.- -+...-+++.++|++|++|++. T Consensus 48 ~~p~RIQilG~~E~~Yl~~l~~e~r~~~l~~l~~~~~P~iIvt-----~~~~~p~~l~~~a~~~~iPll~ 112 (119) T 1knx_A 48 SQIGSVAILGKREFGFLSQKTLVEQQQILHNLLKLNPPAIILT-----KSFTDPTVLLQVNQTYQVPILK 112 (119) T ss_dssp SCCCBCEEECHHHHHHHTTSCHHHHTTTHHHHHTTCCSCEEEE-----TTTCCCHHHHHHGGGTCCCEEE T ss_pred CCCCEEEEECHHHHHHHHHCCHHHHHHHHHHHHCCCCCEEEEE-----CCCCCCHHHHHHHHHCCCEEEE T ss_conf 6988799987899999982999999999999838899889998-----9599999999999983953998 No 42 >>3hvy_A Cystathionine beta-lyase family protein, YNBB B.subtilis ortholog; NP_348457.1; HET: LLP MSE; 2.00A {Clostridium acetobutylicum} (A:66-280) Probab=27.56 E-value=45 Score=14.98 Aligned_cols=43 Identities=7% Similarity=-0.069 Sum_probs=29.3 Q ss_pred HHHHHCCCCCEEEEEEEE-C----CCCCCCCHHHHHHHHHHHCCCEEE Q ss_conf 998876996005988853-6----887505989999999983890777 Q gi|254780359|r 155 DLCKITGLPPIAVICELV-N----DDGTIKKGKQVIEFSKKYDLKIIS 197 (210) Q Consensus 155 dL~~lAGl~P~~vi~Eil-~----~~G~~~~~~~~~~fA~~~~lp~i~ 197 (210) .+...-.-.+..++.+.. + ..|+....+++.++|++||++++- T Consensus 103 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~~i~~~a~~~g~~li~ 150 (215) T 3hvy_A 103 KEELKKDDSIKLIHIQRSTGYGWRKSLRIAEIAEIIKSIREVNENVIV 150 (215) T ss_dssp HHHHHHCTTEEEEEEESSCCSSSSCCCCHHHHHHHHHHHHHHCSSSEE T ss_pred HHHHCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEE T ss_conf 986165677499995788877778637799999999999985689889 No 43 >>1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-amino-7-ketopelargonate synthase; 1.65A {Escherichia coli} (A:77-263) Probab=27.55 E-value=45 Score=14.98 Aligned_cols=30 Identities=10% Similarity=0.103 Sum_probs=14.8 Q ss_pred EEEEEECCCCCCCCHHHHHHHHHHHCCCEE Q ss_conf 988853688750598999999998389077 Q gi|254780359|r 167 VICELVNDDGTIKKGKQVIEFSKKYDLKII 196 (210) Q Consensus 167 vi~Eil~~~G~~~~~~~~~~fA~~~~lp~i 196 (210) +++-.-+..|.++..+++.+++++|+++++ T Consensus 97 ~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~ 126 (187) T 1bs0_A 97 VTEGVFSMDGDSAPLAEIQQVTQQHNGWLM 126 (187) T ss_dssp EEESBCTTTCCBCCHHHHHHHHHHTTCEEE T ss_pred EECCCCCCCCCCHHHHHHHHHHHHCCCEEE T ss_conf 952777888772114779999885490997 No 44 >>3gmt_A Adenylate kinase; ssgcid, ATP- binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B} (A:1-119,A:201-230) Probab=27.38 E-value=46 Score=14.96 Aligned_cols=32 Identities=28% Similarity=0.422 Sum_probs=15.1 Q ss_pred EECCCCCCCCHHHHHHHHHHHCCCEEEHHHHHH Q ss_conf 536887505989999999983890777999999 Q gi|254780359|r 171 LVNDDGTIKKGKQVIEFSKKYDLKIISVQDLIA 203 (210) Q Consensus 171 il~~~G~~~~~~~~~~fA~~~~lp~i~i~dli~ 203 (210) |+...|. -+...+..+|++++++.|+..|+++ T Consensus 13 I~GpPGS-GKsT~a~~La~~~gl~hIs~gdlir 44 (149) T 3gmt_A 13 LLGAPGA-GKGTQANFIKEKFGIPQISTGDXLR 44 (149) T ss_dssp EECCTTS-CHHHHHHHHHHHHTCCEECHHHHHH T ss_pred EECCCCC-CHHHHHHHHHHHHCCEEECHHHHHH T ss_conf 9899999-8799999999987995774999999 No 45 >>2a8j_A Taspase 1, threonine aspartase 1; MLL, glycosylspraginase, asparaginase, hydrolase; 1.90A {Homo sapiens} PDB: 2a8i_A 2a8m_A 2a8l_A (A:) Probab=27.36 E-value=27 Score=16.39 Aligned_cols=27 Identities=4% Similarity=0.031 Sum_probs=18.9 Q ss_pred CCCCHHHHHHHHHHHCCCEEEHHHHHH Q ss_conf 505989999999983890777999999 Q gi|254780359|r 177 TIKKGKQVIEFSKKYDLKIISVQDLIA 203 (210) Q Consensus 177 ~~~~~~~~~~fA~~~~lp~i~i~dli~ 203 (210) .++-++.+.+||+++|++++.-+.++. T Consensus 163 ~~LvGegA~~fA~~~G~~~~~~~~l~t 189 (420) T 2a8j_A 163 CFLVGEGAYRWAVDHGIPSCPPNIMTT 189 (420) T ss_dssp SEEEHHHHHHHHHHTTCCBCC------ T ss_pred EEEECHHHHHHHHHHCCCCCCCCCCCC T ss_conf 699756589999970986204434478 No 46 >>2wqd_A Phosphoenolpyruvate-protein phosphotransferase; kinase, cytoplasm, transport, magnesium, PEP- utilising enzyme, phosphotransferase system; 2.40A {Staphylococcus aureus} PDB: 2hro_A (A:1-30,A:151-260) Probab=27.01 E-value=19 Score=17.28 Aligned_cols=79 Identities=14% Similarity=0.084 Sum_probs=51.4 Q ss_pred CCEEEEHHHCCHHHHHHHH-HHCCCCEEEE-----CCHHHHHHHHCCCCCCCCCC--CCCCCEEEEEECCCCC-CCCCCH Q ss_conf 0133484459999999999-7089945861-----46899987403643244566--5665217887203477-789998 Q gi|254780359|r 37 ADLVLAAIHCTSEKMAFII-RHTCGIVCTP-----MPFHTAHKLKLNPMVLENES--VHKTAFTVSVDSKHGI-TTGISA 107 (210) Q Consensus 37 gDlv~~Ae~vt~e~i~fm~-~~~~Glic~a-----l~~~~~~~L~Lp~m~~~n~~--~~~taFtvsvd~~~g~-tTGISa 107 (210) -+.|+-++-++|..+..|. .+..|+++-. =..-.|+.+|+|.++.-... .-...-.+.||...|. ..+=+. T Consensus 36 e~~ILVa~el~Ps~~~~l~~~~v~GiVt~~GG~tSHaAIlARslGIPaivG~~~~~~~i~~G~~ViiDg~~G~V~i~P~~ 115 (140) T 2wqd_A 36 ESVVIVGNDLTPSDTAQLNKEFVQGFATNIGGRTSASAIMSRSLEIPAIVGTKSITQEVKQGDMIIVDGLNGDVIVNPTE 115 (140) T ss_dssp CCEEEEESCCCHHHHTTCCTTTEEEEEESSCCTTSHHHHHHHHTTCCEEECCSSHHHHCCTTCEEEEETTTTEEEESCCH T ss_pred CCEEEEECCCCCHHHHCCCCCCEEEEEEEECCCCCHHHHHHHHCCCCEEEECCCCHHHHCCCCEEEEECCCCEEEEECCC T ss_conf 97699951488044311452103689997057634399999983998497136302231489789984688469973450 Q ss_pred HHHHHHHH Q ss_conf 89999999 Q gi|254780359|r 108 DDRAYTIK 115 (210) Q Consensus 108 ~DRa~TIr 115 (210) ..++.--+ T Consensus 116 ~~i~~y~~ 123 (140) T 2wqd_A 116 DELIAYQD 123 (140) T ss_dssp HHHHHHHH T ss_pred HHHHHHHH T ss_conf 25655468 No 47 >>2gez_A L-asparaginase alpha subunit; isoaspartyl aminopeptidase, NTN-hydrolase, autoproteolysis, taspase, sodium binding; 2.60A {Lupinus luteus} (A:74-142) Probab=26.91 E-value=28 Score=16.28 Aligned_cols=24 Identities=8% Similarity=0.106 Sum_probs=19.1 Q ss_pred CCCCCCCHHHHHHHHHHHCCCEEE Q ss_conf 887505989999999983890777 Q gi|254780359|r 174 DDGTIKKGKQVIEFSKKYDLKIIS 197 (210) Q Consensus 174 ~~G~~~~~~~~~~fA~~~~lp~i~ 197 (210) .+-.++-++.+.+||+++|+++++ T Consensus 46 ~~h~~LvG~gA~~fA~~~G~~~~d 69 (69) T 2gez_A 46 TPHIYLAFQGAQDFAKQQGVETVD 69 (69) T ss_dssp SSCSEEEHHHHHHHHHHHTCCBCC T ss_pred CCCEEEECHHHHHHHHHCCCCCCC T ss_conf 742166647899999984997368 No 48 >>3c19_A Uncharacterized protein MK0293; protein structure initiative, PSI-2, NEW YORK SGX research center for structural genomics, nysgxrc; 2.50A {Methanopyrus kandleri AV19} (A:1-10,A:96-186) Probab=26.68 E-value=40 Score=15.34 Aligned_cols=29 Identities=10% Similarity=0.085 Sum_probs=22.0 Q ss_pred CCHHHHHHHHHHHCCCEEEHHHHHH--HHHH Q ss_conf 5989999999983890777999999--9984 Q gi|254780359|r 179 KKGKQVIEFSKKYDLKIISVQDLIA--WRKK 207 (210) Q Consensus 179 ~~~~~~~~fA~~~~lp~i~i~dli~--yr~~ 207 (210) .-.+++.+.|+++|+|+-.+.+.+. |+++ T Consensus 50 PEyED~k~iA~~~gipl~eV~~~i~~~~~e~ 80 (101) T 3c19_A 50 AEFDECREIGEETGIPPREVKAMVEAAARVG 80 (101) T ss_dssp ECHHHHHHHHHHHCSCHHHHHHHHHHHHHHT T ss_pred CCHHHHHHHHHHHCCCHHHHHHHHHHHHHHC T ss_conf 1899999999997939999999999998863 No 49 >>1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas putida} (A:1-259) Probab=26.39 E-value=48 Score=14.85 Aligned_cols=51 Identities=8% Similarity=-0.066 Sum_probs=35.0 Q ss_pred CCHHHHHHHHHHHCCCCCEEEEEEEEC--CCCCCCC---HHHHHHHHHHHCCCEEE Q ss_conf 780267769988769960059888536--8875059---89999999983890777 Q gi|254780359|r 147 PGHTEASVDLCKITGLPPIAVICELVN--DDGTIKK---GKQVIEFSKKYDLKIIS 197 (210) Q Consensus 147 ~GHTEaavdL~~lAGl~P~~vi~Eil~--~~G~~~~---~~~~~~fA~~~~lp~i~ 197 (210) ..+-|..++-...++..|..++.++.- ..|.... .+++.+++++|+++++. T Consensus 123 ~~~le~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~i~~ia~~~g~~liv 178 (259) T 1v72_A 123 IVRLRERTREKVGDVHTTQPACVSITQATEVGSIYTLDEIEAIGDVCKSSSLGLHM 178 (259) T ss_dssp HHHHHHHTTSSTTCTTSCEEEEEEEESSCTTSCCCCHHHHHHHHHHHHHTTCEEEE T ss_pred HHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH T ss_conf 77753232012323345441343111221123214478765456677765477764 No 50 >>1y88_A Hypothetical protein AF1548; APC5567, structural genomics, protein structure initiative, PSI; 1.85A {Archaeoglobus fulgidus} (A:1-144) Probab=26.29 E-value=40 Score=15.31 Aligned_cols=18 Identities=11% Similarity=0.211 Sum_probs=8.7 Q ss_pred CCCHHHHHHHHHHHCCCC Q ss_conf 678026776998876996 Q gi|254780359|r 146 RPGHTEASVDLCKITGLP 163 (210) Q Consensus 146 R~GHTEaavdL~~lAGl~ 163 (210) ..|.|+.+.+.++-.+.. T Consensus 102 ~~~ft~~A~~~a~~~~i~ 119 (144) T 1y88_A 102 NTKFSEEAKKYAGCVGIK 119 (144) T ss_dssp SSEECHHHHHHHHHHTCE T ss_pred CCCCCHHHHHHHHHCCCE T ss_conf 896799999999975978 No 51 >>2cob_A LCOR protein; MLR2, KIAA1795, helix-turn-helix, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:) Probab=25.87 E-value=49 Score=14.79 Aligned_cols=21 Identities=19% Similarity=0.423 Sum_probs=16.3 Q ss_pred CCCCCHHHHHHHHHHHHCCCE Q ss_conf 757795669999999968982 Q gi|254780359|r 4 KKSLDERYIEDVIQSFQKGEM 24 (210) Q Consensus 4 ~~~~~~~~ie~ai~al~~G~~ 24 (210) ..+..+..+++||+++++|++ T Consensus 11 ~~~yt~e~l~~Ai~aV~~g~m 31 (70) T 2cob_A 11 YRQYNSEILEEAISVVMSGKM 31 (70) T ss_dssp SCCCCHHHHHHHHHHHHTTSS T ss_pred CCCCCHHHHHHHHHHHHHCCE T ss_conf 233688899999999983541 No 52 >>2w7t_A CTP synthetase, putative cytidine triphosphate synthase; glutaminase domain, trypsanosoma brucei, ligase, acivicin; HET: 5CS; 2.10A {Trypanosoma brucei} (A:1-129,A:223-273) Probab=25.63 E-value=36 Score=15.63 Aligned_cols=40 Identities=5% Similarity=-0.038 Sum_probs=21.2 Q ss_pred HHCCCCCEEEEEEEEC-CCCCCCCHHHHHHHHHHHCCCEEE Q ss_conf 8769960059888536-887505989999999983890777 Q gi|254780359|r 158 KITGLPPIAVICELVN-DDGTIKKGKQVIEFSKKYDLKIIS 197 (210) Q Consensus 158 ~lAGl~P~~vi~Eil~-~~G~~~~~~~~~~fA~~~~lp~i~ 197 (210) ...|+.|+.+++-.=+ ..|..-...++.+||++|++|+.- T Consensus 61 ~~~~l~~~~vV~v~Gttg~ggiD~~~~i~~~are~~ip~hg 101 (180) T 2w7t_A 61 ARKALLGCDGIFVPGGFGNRGVDGKCAAAQVARMNNIPYFG 101 (180) T ss_dssp HHHHHHTCSEEEECCCCTTTTHHHHHHHHHHHHHHTCCEEE T ss_pred HHHHHCCCCCEEECCCCCCCCCHHHHHHHHHHHHCCCCHHH T ss_conf 99874367745737847878706899999999973886034 No 53 >>3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis} (A:55-296) Probab=25.59 E-value=49 Score=14.75 Aligned_cols=90 Identities=11% Similarity=-0.007 Sum_probs=48.0 Q ss_pred HHHHHHHHHHHHHH--CCHHHHCCCCCCCEEEE---CCCCCCCC----CCHH-HHHHH-HHHHCCCCCEEEEEEEECCCC Q ss_conf 89999999998420--13243138985001001---26982466----7802-67769-988769960059888536887 Q gi|254780359|r 108 DDRAYTIKNLANPH--SIADNFVRPGHIFPLIS---RDGGVLVR----PGHT-EASVD-LCKITGLPPIAVICELVNDDG 176 (210) Q Consensus 108 ~DRa~TIr~la~~~--~~~~df~~PGHV~pL~a---~~gGvl~R----~GHT-Eaavd-L~~lAGl~P~~vi~Eil~~~G 176 (210) ..-...+..+..+. ..-.++..|.+..++.. ...+.... .+.+ +..++ +-+..+-....|+.-..+..| T Consensus 64 ~a~~~~~~a~~~~g~~vi~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~v~~~~~~~~G 143 (242) T 3h7f_A 64 QANAAVLHALMSPGERLLGLDLANGGHLTHGMRLNFSGKLYENGFYGVDPATHLIDMDAVRATALEFRPKVIIAGWSAYP 143 (242) T ss_dssp HHHHHHHHHHCCTTCEEEEECGGGTCCGGGTCTTSHHHHSSEEEEECCCTTTCSCCHHHHHHHHHHHCCSEEEEECSSCC T ss_pred HHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCE T ss_conf 78999999862889701233046677445555445555532134456660343310468999976336756986564532 Q ss_pred CCCCHHHHHHHHHHHCCCEEE Q ss_conf 505989999999983890777 Q gi|254780359|r 177 TIKKGKQVIEFSKKYDLKIIS 197 (210) Q Consensus 177 ~~~~~~~~~~fA~~~~lp~i~ 197 (210) ...+.+++.+++++||++++. T Consensus 144 ~~~~l~~i~~la~~~g~~~iv 164 (242) T 3h7f_A 144 RVLDFAAFRSIADEVGAKLLV 164 (242) T ss_dssp SCCCHHHHHHHHHHHTCEEEE T ss_pred ECCCHHHHHHHHHHCCCEEEC T ss_conf 025689999987630415862 No 54 >>3hqs_A CAI-1 autoinducer synthase; quorum sensing, CQSA, PLP, virulence, acyltransferase, aminotransferase, pyridoxal phosphate, transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A (A:) Probab=25.42 E-value=50 Score=14.74 Aligned_cols=55 Identities=15% Similarity=0.143 Sum_probs=41.1 Q ss_pred CCCCCCHHHHHHHHHHHCCCCCEEEEEEEE-CCCCCCCCHHHHHHHHHHHCCCEEE Q ss_conf 246678026776998876996005988853-6887505989999999983890777 Q gi|254780359|r 143 VLVRPGHTEASVDLCKITGLPPIAVICELV-NDDGTIKKGKQVIEFSKKYDLKIIS 197 (210) Q Consensus 143 vl~R~GHTEaavdL~~lAGl~P~~vi~Eil-~~~G~~~~~~~~~~fA~~~~lp~i~ 197 (210) -..+..|....-.+..+..-...+++.|-+ +..|.....+++.+.+++||+.++- T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~v~~~~G~~~~l~~i~~l~~~~g~~li~ 221 (409) T 3hqs_A 166 QAHPFMHNNCDHLRMLIQRHGPGIIVVDSIYSTLGTIAPLAELVNISKEFGCALLV 221 (409) T ss_dssp EEEEECTTCHHHHHHHHHHHCSCEEEEESBCTTTCCBCCHHHHHHHHHHHTCEEEE T ss_pred CCEEECCCCHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCH T ss_conf 32145578899998755325772598535545541011235666799984700020 No 55 >>1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} (A:54-319) Probab=25.06 E-value=50 Score=14.69 Aligned_cols=39 Identities=5% Similarity=-0.112 Sum_probs=32.5 Q ss_pred HHCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHCCCEE Q ss_conf 876996005988853688750598999999998389077 Q gi|254780359|r 158 KITGLPPIAVICELVNDDGTIKKGKQVIEFSKKYDLKII 196 (210) Q Consensus 158 ~lAGl~P~~vi~Eil~~~G~~~~~~~~~~fA~~~~lp~i 196 (210) +...-...++++-..+..|...+.+++.+.+++||++++ T Consensus 134 ~~~~~~~~~v~~~~~~~~G~~~~i~~i~~l~~~~g~~~~ 172 (266) T 1rv3_A 134 ENARLFHPKLIIAGTSCYSRNLDYGRLRKIADENGAYLM 172 (266) T ss_dssp HHHHHHCCSEEEECCSSCCSCCCHHHHHHHHHHTTCEEE T ss_pred HHHHHHCCCEEEECHHHCCCCCCHHHHHHHHHHCCCEEE T ss_conf 998740665488313441254677999887864497597 No 56 >>1k2x_A Putative L-asparaginase; NTN hydrolase, asparginase, autoproteolysis; HET: CME; 1.65A {Escherichia coli} (A:72-139) Probab=24.37 E-value=27 Score=16.37 Aligned_cols=23 Identities=13% Similarity=0.170 Sum_probs=18.7 Q ss_pred CCCCCCHHHHHHHHHHHCCCEEE Q ss_conf 87505989999999983890777 Q gi|254780359|r 175 DGTIKKGKQVIEFSKKYDLKIIS 197 (210) Q Consensus 175 ~G~~~~~~~~~~fA~~~~lp~i~ 197 (210) +-.++-++.+.+||+++|+|..+ T Consensus 46 ~h~~L~G~gA~~fA~~~G~~~~~ 68 (68) T 1k2x_A 46 PHVMMIGEGAENFAFARGMERVS 68 (68) T ss_dssp SCSEEEHHHHHHHHHTTTCCCCC T ss_pred CCEEEECHHHHHHHHHCCCCCCC T ss_conf 98477537799999984996379 No 57 >>1uc8_A LYSX, lysine biosynthesis enzyme; alpha-aminoadipate pathway, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.00A {Thermus thermophilus} (A:103-174) Probab=23.94 E-value=53 Score=14.56 Aligned_cols=15 Identities=0% Similarity=0.319 Sum_probs=5.6 Q ss_pred HHHHHHHHHHHCCCE Q ss_conf 899999999838907 Q gi|254780359|r 181 GKQVIEFSKKYDLKI 195 (210) Q Consensus 181 ~~~~~~fA~~~~lp~ 195 (210) .+++.+||++.|+|+ T Consensus 10 ~eea~~~a~~iGyPV 24 (72) T 1uc8_A 10 REEALRLMEAFGYPV 24 (72) T ss_dssp HHHHHHHHHHHCSSE T ss_pred HHHHHHHHHHHCCCE T ss_conf 167788776421100 No 58 >>1m22_A Peptide amidase, PAM; eleven-stranded beta sheet, covered double layers of alpha helices on TOP and bottom, hydrolase; HET: EPE; 1.40A {Stenotrophomonas maltophilia} (A:316-398) Probab=23.71 E-value=54 Score=14.53 Aligned_cols=27 Identities=19% Similarity=0.272 Sum_probs=21.7 Q ss_pred HHHHHHHHHHCCCEEEHHHHHHHHHHC Q ss_conf 999999998389077799999999843 Q gi|254780359|r 182 KQVIEFSKKYDLKIISVQDLIAWRKKK 208 (210) Q Consensus 182 ~~~~~fA~~~~lp~i~i~dli~yr~~~ 208 (210) .++..|-..+.-|+-|.+|||+|-+++ T Consensus 17 ~~Ln~YL~~~~~pvrSLadlIaFN~~h 43 (83) T 1m22_A 17 AGLERYFNTHRAPLRSLADLIAFNQAH 43 (83) T ss_dssp HHHHHHHHHTTCSCCSHHHHHHHHHHT T ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHH T ss_conf 989999875134320067888888753 No 59 >>1zym_A Enzyme I; phosphotransferase; 2.50A {Escherichia coli} (A:1-27,A:149-258) Probab=22.37 E-value=51 Score=14.66 Aligned_cols=77 Identities=16% Similarity=0.131 Sum_probs=49.6 Q ss_pred CCCEEEEHHHCCHHHHHHHH-HHCCCCEEE-----ECCHHHHHHHHCCCCCCCCC--CCCCCCEEEEEECCCCC-CCCCC Q ss_conf 70133484459999999999-708994586-----14689998740364324456--65665217887203477-78999 Q gi|254780359|r 36 EADLVLAAIHCTSEKMAFII-RHTCGIVCT-----PMPFHTAHKLKLNPMVLENE--SVHKTAFTVSVDSKHGI-TTGIS 106 (210) Q Consensus 36 EgDlv~~Ae~vt~e~i~fm~-~~~~Glic~-----al~~~~~~~L~Lp~m~~~n~--~~~~taFtvsvd~~~g~-tTGIS 106 (210) +-.-|+-++.+||..+..|- +...|+++- +=..-.|+.|++|.++.-.. +.....-.+.||...|. ..+=+ T Consensus 32 ~e~~ILVa~~l~Ps~~~~l~~~~i~GiVt~~GG~tSHaAIlARslgIPavvG~~~~~~~i~~g~~ViIDg~~G~V~i~P~ 111 (137) T 1zym_A 32 QDEVILVAADLTPSETAQLNLKKVLGFITDAGGRTSHTSIMARSLELPAIVGTGSVTSQVKNDDYLILDAVNNQVYVNPT 111 (137) T ss_dssp CSCEEEECSCCCHHHHHHSCGGGEEEEECSCCCSSSHHHHHHHHHTCCEECCCSCHHHHCCTTCEEEECCSSCCEEESCC T ss_pred CCCEEEEEECCCCHHHHHHHHHHEEEEEEECCCCCCHHHHHHHHCCCCEEEECCHHHHHCCCCCEEEEECCCCEEEECCC T ss_conf 99869998278605666654302048997169987659999997399679971045640779999999899987998999 Q ss_pred HHHHHH Q ss_conf 889999 Q gi|254780359|r 107 ADDRAY 112 (210) Q Consensus 107 a~DRa~ 112 (210) ...+.. T Consensus 112 ~~~~~~ 117 (137) T 1zym_A 112 NEVIDK 117 (137) T ss_dssp HHHHHH T ss_pred HHHHHH T ss_conf 999999 No 60 >>3e6g_A Xometc, cystathionine gamma-lyase-like protein; bacterial blight, cystathionine lyase, reverse transsulfuration pathway; 2.80A {Xanthomonas oryzae PV} (A:1-262) Probab=22.17 E-value=57 Score=14.34 Aligned_cols=33 Identities=15% Similarity=0.013 Sum_probs=25.4 Q ss_pred EEEEEE-EECCCCCCCCHHHHHHHHHHHCCCEEE Q ss_conf 059888-536887505989999999983890777 Q gi|254780359|r 165 IAVICE-LVNDDGTIKKGKQVIEFSKKYDLKIIS 197 (210) Q Consensus 165 ~~vi~E-il~~~G~~~~~~~~~~fA~~~~lp~i~ 197 (210) -.|++. .-+..|...+.+++.++|++|+++++. T Consensus 154 k~v~i~~p~n~~G~v~dl~~i~~~a~~~g~~~i~ 187 (262) T 3e6g_A 154 KMVWIETPTNPMLKLVDIAAIAVIARKHGLLTVV 187 (262) T ss_dssp EEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEE T ss_pred EEEEEECCCCCCEEECCCHHHHHHHHHCCCEEEE T ss_conf 5999956753340332608899988636971786 No 61 >>1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'- phosphate, hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} (A:63-272) Probab=22.09 E-value=58 Score=14.33 Aligned_cols=43 Identities=16% Similarity=0.161 Sum_probs=30.6 Q ss_pred HHHHHCCCCCEEEEEEEEC-CCCCCCCHHHHHHHHHHHCCCEEE Q ss_conf 9988769960059888536-887505989999999983890777 Q gi|254780359|r 155 DLCKITGLPPIAVICELVN-DDGTIKKGKQVIEFSKKYDLKIIS 197 (210) Q Consensus 155 dL~~lAGl~P~~vi~Eil~-~~G~~~~~~~~~~fA~~~~lp~i~ 197 (210) ++.+.-.-.+..|+++..+ ..|.+...+++.+.+++|+++++- T Consensus 95 ~~~~ai~~~t~~v~~~~~~n~tG~~~~l~~i~~~~~~~~~~v~v 138 (210) T 1qz9_A 95 ELPQAIDQDTAVVMLTHVNYKTGYMHDMQALTALSHECGALAIW 138 (210) T ss_dssp GHHHHCSTTEEEEEEESBCTTTCBBCCHHHHHHHHHHHTCEEEE T ss_pred HHHHHCCCCCEEEEEEEECCCCCCEECHHHHHHHHHHCCCEEEE T ss_conf 99974688835999975248877461699999886205742898 No 62 >>1ulz_A Pyruvate carboxylase N-terminal domain; biotin carboxylase, ligase; 2.20A {Aquifex aeolicus VF5} (A:133-203) Probab=21.54 E-value=59 Score=14.26 Aligned_cols=12 Identities=8% Similarity=0.124 Sum_probs=5.6 Q ss_pred HHHHHHCCCCCC Q ss_conf 998740364324 Q gi|254780359|r 70 TAHKLKLNPMVL 81 (210) Q Consensus 70 ~~~~L~Lp~m~~ 81 (210) .++++|.|.++. T Consensus 14 ~a~~iG~PvVvK 25 (71) T 1ulz_A 14 LAREIGYPVLLK 25 (71) T ss_dssp HHHHHCSSEEEE T ss_pred HHHHCCCCEEEE T ss_conf 998559969999 No 63 >>2yrx_A Phosphoribosylglycinamide synthetase; glycinamide ribonucleotide synthetase, GAR synthetase, ATP binding; HET: AMP; 1.90A {Geobacillus kaustophilus} PDB: 2yrw_A* 2ys6_A* 2ys7_A (A:138-209) Probab=21.52 E-value=59 Score=14.26 Aligned_cols=10 Identities=0% Similarity=-0.067 Sum_probs=4.1 Q ss_pred HHHHHCCCCC Q ss_conf 9874036432 Q gi|254780359|r 71 AHKLKLNPMV 80 (210) Q Consensus 71 ~~~L~Lp~m~ 80 (210) ++++|.|.++ T Consensus 17 a~~igyPvvv 26 (72) T 2yrx_A 17 IEQKGAPIVI 26 (72) T ss_dssp HHHHCSSEEE T ss_pred HHHCCCEEEE T ss_conf 6504652999 No 64 >>2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A (A:124-287) Probab=21.43 E-value=59 Score=14.25 Aligned_cols=23 Identities=9% Similarity=-0.206 Sum_probs=10.0 Q ss_pred CHHHHHHHHHHCCCCEEEECCHH Q ss_conf 99999999970899458614689 Q gi|254780359|r 47 TSEKMAFIIRHTCGIVCTPMPFH 69 (210) Q Consensus 47 t~e~i~fm~~~~~Glic~al~~~ 69 (210) -+.....+...+..++.++.... T Consensus 35 ~~~~~~~~~~~g~~~~~v~~~~~ 57 (164) T 2w8t_A 35 HASIYDGCQQGNAEIVRFRHNSV 57 (164) T ss_dssp CHHHHHHHHHSCSEEEEECTTCH T ss_pred CHHHHCCCCCCCCCEEEECCCCH T ss_conf 47022163235761699467857 No 65 >>2hwg_A Phosphoenolpyruvate-protein phosphotransferase; enzyme I, phosphoenolpyruvate:sugar phosphotransferase system, PTS; HET: NEP; 2.70A {Escherichia coli} (A:1-27,A:149-257) Probab=21.30 E-value=39 Score=15.40 Aligned_cols=82 Identities=13% Similarity=0.091 Sum_probs=51.7 Q ss_pred CCCEEEEHHHCCHHHHHHHH-HHCCCCEEEE-----CCHHHHHHHHCCCCCCCCCC--CCCCCEEEEEECCCCC-CCCCC Q ss_conf 70133484459999999999-7089945861-----46899987403643244566--5665217887203477-78999 Q gi|254780359|r 36 EADLVLAAIHCTSEKMAFII-RHTCGIVCTP-----MPFHTAHKLKLNPMVLENES--VHKTAFTVSVDSKHGI-TTGIS 106 (210) Q Consensus 36 EgDlv~~Ae~vt~e~i~fm~-~~~~Glic~a-----l~~~~~~~L~Lp~m~~~n~~--~~~taFtvsvd~~~g~-tTGIS 106 (210) +...|+-|+-++|..+..|. .+..|+++-. -..-.|+.+++|.++.-... .-...-.+.||...|. .-+=+ T Consensus 32 ~~~~ILVa~el~Ps~~~~l~~~~i~GiVt~~GG~tSHaAIiAR~lgIP~Vvg~~~~~~~i~~G~~viiDg~~G~V~inP~ 111 (136) T 2hwg_A 32 QDEVILVAADLTPSETAQLNLKKVLGFITDAGGRTSXTSIXARSLELPAIVGTGSVTSQVKNDDYLILDAVNNQVYVNPT 111 (136) T ss_dssp CSCEEEEESCCCHHHHHTCCTTTEEEEEESSCCTTSHHHHHHHHTTCCEEECCSCHHHHCCTTCEEEEETTTTEEEESCC T ss_pred CCCEEEEEECCCHHHHHHCCHHHHEEEEEECCCCCCCHHHHHHHCCCCEEEECCCCHHHHCCCCEEEECCCCEEEEECCC T ss_conf 99879998458767788607354016667626654209999997288648742542223056508998154017860354 Q ss_pred HHHHHHHHHHH Q ss_conf 88999999999 Q gi|254780359|r 107 ADDRAYTIKNL 117 (210) Q Consensus 107 a~DRa~TIr~l 117 (210) ...+..--+.. T Consensus 112 ~~~~~~y~~~~ 122 (136) T 2hwg_A 112 NEVIDKXRAVQ 122 (136) T ss_dssp HHHHHHHHHHH T ss_pred CHHHHHHHHHH T ss_conf 01344555568 No 66 >>1tif_A IF3-N, translation initiation factor 3; IF3 N-terminal domain, ribosome binding factor; 1.80A {Geobacillus stearothermophilus} (A:) Probab=21.15 E-value=60 Score=14.21 Aligned_cols=31 Identities=23% Similarity=0.556 Sum_probs=22.0 Q ss_pred EEEECCCCC---CCCHHHHHHHHHHHCCCEEEHH Q ss_conf 885368875---0598999999998389077799 Q gi|254780359|r 169 CELVNDDGT---IKKGKQVIEFSKKYDLKIISVQ 199 (210) Q Consensus 169 ~Eil~~~G~---~~~~~~~~~fA~~~~lp~i~i~ 199 (210) .-+++++|. .++..++.+.|++.++-++.++ T Consensus 16 VrlId~~g~~lGv~~~~eAl~~A~~~~lDLV~v~ 49 (78) T 1tif_A 16 VRLIDQNGDQLGIKSKQEALEIAARRNLDLVLVA 49 (78) T ss_dssp EEEECTTSCEEEEEEHHHHHHHHHHTTCEEEEEE T ss_pred EEEECCCCCEECCCCHHHHHHHHHHHCCCEEEEC T ss_conf 9998799968572249999999998167879844 No 67 >>3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, cytoplasm, one-carbon metabolism, pyridoxal phosphate; HET: MSE; 1.80A {Salmonella typhimurium} PDB: 1dfo_A* 1eqb_A* (A:40-284) Probab=20.54 E-value=62 Score=14.13 Aligned_cols=36 Identities=6% Similarity=-0.098 Sum_probs=28.7 Q ss_pred CCCCEEEEEEEECCCCCCCCHHHHHHHHHHHCCCEE Q ss_conf 996005988853688750598999999998389077 Q gi|254780359|r 161 GLPPIAVICELVNDDGTIKKGKQVIEFSKKYDLKII 196 (210) Q Consensus 161 Gl~P~~vi~Eil~~~G~~~~~~~~~~fA~~~~lp~i 196 (210) .-....++....+..|.+...+++.++|++||++++ T Consensus 127 ~~~~~v~~~~~~~~~g~~~~i~~I~~~a~~~gi~~~ 162 (245) T 3gbx_A 127 KEHKPKXIIGGFSAYSGVVDWAKXREIADSIGAYLF 162 (245) T ss_dssp HHHCCSEEEECCTTCCSCCCHHHHHHHHHHTTCEEE T ss_pred HHHCCCEEEECCCCCCCCCCHHHHHHHHHHCCEEEE T ss_conf 874775488445335565578999998874381788 No 68 >>3bb8_A CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartate aminotransferase fold, oxidoreductase; HET: PLP; 2.35A {Yersinia pseudotuberculosis} PDB: 3bcx_A (A:) Probab=20.38 E-value=62 Score=14.11 Aligned_cols=59 Identities=12% Similarity=0.060 Sum_probs=37.5 Q ss_pred HHHHHHHHHHHCCCEEEEEECCC------------------CCCCCCEEEEHHHCCHHHHHHHHHHCCCCEEEECCH Q ss_conf 66999999996898299996778------------------988701334844599999999997089945861468 Q gi|254780359|r 10 RYIEDVIQSFQKGEMVIVTDADD------------------RENEADLVLAAIHCTSEKMAFIIRHTCGIVCTPMPF 68 (210) Q Consensus 10 ~~ie~ai~al~~G~~Viv~D~~d------------------REnEgDlv~~Ae~vt~e~i~fm~~~~~Glic~al~~ 68 (210) ..+++++..+-..+-++.+.+.. .=++||-|+--...-+..++-+...+.-.+.+.++. T Consensus 65 ~~l~~~~a~~~~~~~~v~~~~gt~a~~~~~~~~~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~v~v~~~~ 141 (437) T 3bb8_A 65 DAFEKKLGEYLGVPYVLTTTSGSSANLLALTALTSPKLGVRALKPGDEVITVAAGFPTTVNPTIQNGLIPVFVDVDI 141 (437) T ss_dssp HHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHTTCGGGGGGSCCTTCEEEECSSSCHHHHHHHHHTTCEEEECCEET T ss_pred HHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHCCCHHHHCCCCCCCEEEECCCCCCHHHHHHHHCCCCEEECCCCC T ss_conf 99999999997998399965679999999997415135541466898688346443005999986245337525665 Done!