Query         gi|254780359|ref|YP_003064772.1| GTP cyclohydrolase II protein (riboflavin biosynthesis) [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 210
No_of_seqs    114 out of 1786
Neff          5.2 
Searched_HMMs 23785
Date          Mon May 30 09:47:01 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780359.hhm -d /home/congqian_1/database/pdb/pdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 1g57_A DHBP synthase, 3,4-dihy 100.0       0       0  536.9  21.2  204    6-209    10-213 (217)
  2 1snn_A DHBP synthase, 3,4-dihy 100.0       0       0  526.9  20.9  199   10-209     2-224 (227)
  3 1k4i_A 3,4-dihydroxy-2-butanon 100.0       0       0  528.2  18.8  209    1-209     1-224 (233)
  4 1tks_A 3,4-dihydroxy-2-butanon 100.0       0       0  518.4  19.8  201    6-207     3-204 (204)
  5 3n2l_A OPRT, oprtase, orotate   90.7    0.83 3.5E-05   24.9   6.9   76  129-208   141-219 (238)
  6 3mjd_A Orotate phosphoribosylt  85.6     2.1 8.8E-05   22.4   6.5   78  128-208   133-214 (232)
  7 1y0n_A Hypothetical UPF0270 pr  74.5     4.1 0.00017   20.5   4.7   39    5-47     34-72  (78)
  8 1lh0_A OMP synthase; loop clos  72.9     5.4 0.00023   19.8   7.6   76  129-208   116-194 (213)
  9 2zxr_A Single-stranded DNA spe  67.0     7.2  0.0003   19.0   5.7   91   10-117    60-151 (666)
 10 2ps1_A Orotate phosphoribosylt  57.9      10 0.00044   18.0   6.7   77  128-207   122-205 (226)
 11 3p04_A Uncharacterized BCR; SE  55.2     7.9 0.00033   18.8   3.0   43    7-63     13-55  (87)
 12 2wns_A Orotate phosphoribosylt  43.4      18 0.00075   16.6   7.4   71  129-209   109-182 (205)
 13 2qma_A Diaminobutyrate-pyruvat  41.6      19  0.0008   16.4   5.9   50  146-195   241-291 (497)
 14 1kor_A Argininosuccinate synth  36.3      22 0.00092   16.0   2.8   45  151-197   122-166 (400)
 15 1hru_A YRDC gene product; prot  36.1      23 0.00097   15.9   4.3   63    6-74      4-71  (188)
 16 2erx_A GTP-binding protein DI-  33.6      20 0.00084   16.2   2.3   42  158-199   105-147 (172)
 17 2okj_A Glutamate decarboxylase  32.5      26  0.0011   15.5   5.6   48  148-195   230-278 (504)
 18 3m3h_A OPRT, oprtase, orotate   31.3      28  0.0012   15.4   6.8   72  128-208   134-208 (234)
 19 3erv_A Putative C39-like pepti  31.3      27  0.0011   15.4   2.7   25   46-74     50-75  (236)
 20 2gez_A L-asparaginase alpha su  29.8      11 0.00045   18.0   0.4   66  137-202    69-147 (195)
 21 2kg4_A Growth arrest and DNA-d  29.3      20 0.00083   16.3   1.7   25   53-77     81-105 (165)
 22 3jsz_A LGT1, putative uncharac  29.0      20 0.00084   16.3   1.7   52  150-201   150-202 (525)
 23 1k2x_A Putative L-asparaginase  28.3       2 8.2E-05   22.6  -3.6   65  138-202    67-144 (177)
 24 1mdo_A ARNB aminotransferase;   28.2      30  0.0013   15.1   2.5   92   69-162   148-259 (393)
 25 2jya_A AGR_C_3324P, uncharacte  26.8      33  0.0014   14.9   2.6   19  180-198    60-78  (106)
 26 2uvp_A HOBA; hypothetical prot  26.7      33  0.0014   14.9   2.6   24   11-34     42-65  (186)
 27 1bs0_A Protein (8-amino-7-oxon  24.4      36  0.0015   14.6   4.2   34  163-196   168-202 (384)
 28 1tif_A IF3-N, translation init  23.4      38  0.0016   14.5   2.4   29  171-199    18-49  (78)
 29 1js3_A DDC;, DOPA decarboxylas  22.9      39  0.0016   14.4   6.0   48  148-195   220-268 (486)
 30 3con_A GTPase NRAS; structural  20.5      44  0.0018   14.1   3.4   69  127-198    89-162 (190)
 31 2k89_A PLA2P, PLAP, phospholip  20.0      39  0.0016   14.5   1.7   29  180-208    41-69  (80)

No 1  
>1g57_A DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavine biosynthesis, skeletal rearrangement, antimicrobial target; 1.40A {Escherichia coli} SCOP: d.115.1.2 PDB: 1g58_A 1iez_A 3h07_A
Probab=100.00  E-value=0  Score=536.90  Aligned_cols=204  Identities=40%  Similarity=0.701  Sum_probs=200.8

Q ss_pred             CCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEEHHHCCHHHHHHHHHHCCCCEEEECCHHHHHHHHCCCCCCCCCC
Q ss_conf             77956699999999689829999677898870133484459999999999708994586146899987403643244566
Q gi|254780359|r    6 SLDERYIEDVIQSFQKGEMVIVTDADDRENEADLVLAAIHCTSEKMAFIIRHTCGIVCTPMPFHTAHKLKLNPMVLENES   85 (210)
Q Consensus         6 ~~~~~~ie~ai~al~~G~~Viv~D~~dREnEgDlv~~Ae~vt~e~i~fm~~~~~Glic~al~~~~~~~L~Lp~m~~~n~~   85 (210)
                      ...|++|++||++||+|+||||+||+|||||||||++|+++||++|+||++|++|+||+|+++++|++|+||+|+..|.+
T Consensus        10 ~~~~~~i~~ai~al~~G~~Viv~Dd~dRE~EgDlv~aAe~iT~e~i~fm~~~~~GliC~a~~~~~~~~L~Lp~m~~~~~~   89 (217)
T 1g57_A           10 GTPFERVENALAALREGRGVMVLDDEDRENEGDMIFPAETMTVEQMALTIRHGSGIVCLCITEDRRKQLDLPMMVENNTS   89 (217)
T ss_dssp             CCHHHHHHHHHHHHHTTCCEEEEC----CCCEEEEEETTTCCHHHHHHHHHHBCSCCEEEECHHHHHHTTCCBSCSSCCC
T ss_pred             CCCCCHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEEHHHCCHHHHHHHHHHCCCCEEECCCHHHHHHCCCCCCCCCCCC
T ss_conf             89600599999999879979998689988751789785759999999999948988897278999953699973555667


Q ss_pred             CCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHCCCCCE
Q ss_conf             56652178872034777899988999999999842013243138985001001269824667802677699887699600
Q gi|254780359|r   86 VHKTAFTVSVDSKHGITTGISADDRAYTIKNLANPHSIADNFVRPGHIFPLISRDGGVLVRPGHTEASVDLCKITGLPPI  165 (210)
Q Consensus        86 ~~~taFtvsvd~~~g~tTGISa~DRa~TIr~la~~~~~~~df~~PGHV~pL~a~~gGvl~R~GHTEaavdL~~lAGl~P~  165 (210)
                      .++++||+||||++|++|||||+||++||+.|++++++|+||++|||||||++++|||++|+|||||+||||+|||++|+
T Consensus        90 ~~~~~ftvsVd~~~g~tTGISa~DRa~Ti~~l~~~~~~~~df~~PGHV~pL~a~~gGvl~R~GHTEaavdL~~lAGl~P~  169 (217)
T 1g57_A           90 AYGTGFTVTIEAAEGVTTGVSAADRITTVRAAIADGAKPSDLNRPGHVFPLRAQAGGVLTRGGHTEATIDLMTLAGFKPA  169 (217)
T ss_dssp             TTCCCBBSCEEESSSCSSSCSHHHHHHHHHHHHSTTCCGGGEEEEEEEEEEECCTTGGGTCCSHHHHHHHHHHHTTSCSC
T ss_pred             CCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCC
T ss_conf             78885068874267866897999999999987547999465379994486235679806789689899999998199983


Q ss_pred             EEEEEEECCCCCCCCHHHHHHHHHHHCCCEEEHHHHHHHHHHCC
Q ss_conf             59888536887505989999999983890777999999998437
Q gi|254780359|r  166 AVICELVNDDGTIKKGKQVIEFSKKYDLKIISVQDLIAWRKKKE  209 (210)
Q Consensus       166 ~vi~Eil~~~G~~~~~~~~~~fA~~~~lp~i~i~dli~yr~~~e  209 (210)
                      +||||||+++|+||+++++++||++|+||+|+|+|||+||+++|
T Consensus       170 avi~Eil~~~G~~~~~~~~~~fA~~~~l~~isi~dli~yR~~~e  213 (217)
T 1g57_A          170 GVLCELTNDDGTMARAPECIEFANKHNMALVTIEDLVAYRQAHE  213 (217)
T ss_dssp             EEEEEBBCTTSSBCCHHHHHHHHHHTTCEEEEHHHHHHHHHHHC
T ss_pred             EEEEEEECCCCCCCCHHHHHHHHHHCCCCEEEHHHHHHHHHHHC
T ss_conf             89999855998726889999999983997998999999999835


No 2  
>1snn_A DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin biosynthesis, isomerase; HET: 5RP; 1.55A {Methanocaldococcus jannaschii} SCOP: d.115.1.2 PDB: 1pvy_A* 1pvw_A
Probab=100.00  E-value=0  Score=526.95  Aligned_cols=199  Identities=32%  Similarity=0.556  Sum_probs=189.9

Q ss_pred             HHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEEHHHCCHHHHHHHHHHCCCCEEEECCHHHHHHHHCCCCCCCCC-----
Q ss_conf             669999999968982999967789887013348445999999999970899458614689998740364324456-----
Q gi|254780359|r   10 RYIEDVIQSFQKGEMVIVTDADDRENEADLVLAAIHCTSEKMAFIIRHTCGIVCTPMPFHTAHKLKLNPMVLENE-----   84 (210)
Q Consensus        10 ~~ie~ai~al~~G~~Viv~D~~dREnEgDlv~~Ae~vt~e~i~fm~~~~~Glic~al~~~~~~~L~Lp~m~~~n~-----   84 (210)
                      ++|++||++||+|+||||+||++||||||||++|+++|+++|+||++|++|+||+|+++++|++|+||+|+..|.     
T Consensus         2 ~~ie~ai~~lk~G~~Viv~Dd~~REnEgDlv~aAe~~T~e~i~fm~~~~~Glic~a~~~~~~~~L~Lp~mv~~~~~~~~~   81 (227)
T 1snn_A            2 NNVEKAIEALKKGEIILVYDSDEREGETDMVVASQFITPEHIRIMRKDAGGLICTALHPDICNKLGIPFMVDILEFASQK   81 (227)
T ss_dssp             CHHHHHHHHHHTTCCEEEECCTTTTCCEEEEEEGGGCCHHHHHHHHHHTEEEEEEEECHHHHHHHTCCCHHHHHHHHTTT
T ss_pred             CCHHHHHHHHHCCCEEEEEECCCCCCCCCEEEEHHHCCHHHHHHHHHHCCCCEEECCCHHHHHHCCCCHHHCHHHCCCCC
T ss_conf             63999999998799799996899877514897856599999999998489868955899999877994010000101101


Q ss_pred             -------------CCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHH------HHCCHHHHCCCCCCCEEEECCCCCCC
Q ss_conf             -------------65665217887203477789998899999999984------20132431389850010012698246
Q gi|254780359|r   85 -------------SVHKTAFTVSVDSKHGITTGISADDRAYTIKNLAN------PHSIADNFVRPGHIFPLISRDGGVLV  145 (210)
Q Consensus        85 -------------~~~~taFtvsvd~~~g~tTGISa~DRa~TIr~la~------~~~~~~df~~PGHV~pL~a~~gGvl~  145 (210)
                                   ...+++|||||||+ +++|||||.|||+|||.|++      ++++++||++|||||||++++|||++
T Consensus        82 ~~~~~~~~~~~~~~~~~t~ftvsvd~~-~~~TGISa~DRa~Tir~La~~~~~~~~~~~~~df~~PGHVfpL~a~~gGvl~  160 (227)
T 1snn_A           82 FKVLRELYPNDIPYDEKSSFSITINHR-KTFTGITDNDRAFTIKKLAELVKEGRFNDFGKEFRSPGSVTLLRAAEGLVKN  160 (227)
T ss_dssp             CHHHHHTCCTTCTTSSSCCEEEEEEET-TCSSSCSHHHHHHHHHHHHHHHHTTCGGGHHHHEEEEEEEEEEECCTTGGGT
T ss_pred             CCCCCCCCCCCCCCCCCCCEEEEEECC-CCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCEECCCCCCCCCCCC
T ss_conf             221112345777667885149997257-8878878889999999997310114767787466899707955315688744


Q ss_pred             CCCHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHCCCEEEHHHHHHHHHHCC
Q ss_conf             6780267769988769960059888536887505989999999983890777999999998437
Q gi|254780359|r  146 RPGHTEASVDLCKITGLPPIAVICELVNDDGTIKKGKQVIEFSKKYDLKIISVQDLIAWRKKKE  209 (210)
Q Consensus       146 R~GHTEaavdL~~lAGl~P~~vi~Eil~~~G~~~~~~~~~~fA~~~~lp~i~i~dli~yr~~~e  209 (210)
                      |+|||||+||||+|||++|++||||||+++|+||+++++++||++|+||+++|+|||+||+++-
T Consensus       161 R~GHTEaaVdL~~lAGl~P~avi~Eil~~dG~m~~~~~~~~fA~~~~l~~isi~dli~yr~~~~  224 (227)
T 1snn_A          161 RQGHTEMTVALAELANLVPITTICEMMGDDGNAMSKNETKRYAEKHNLIYLSGEEIINYYLDKY  224 (227)
T ss_dssp             CCSHHHHHHHHHHHTTSCSEEEEEEEBCTTSSBCCHHHHHHHHHHHTCCEEEHHHHHHHC----
T ss_pred             CCCHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHCCCCEEEHHHHHHHHHHHH
T ss_conf             7877999999999829986499999856998736889999999984997998999999999866


No 3  
>1k4i_A 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin biosynthesis, antimicrobial target, structure-based design, isomerase; 0.98A {Magnaporthe grisea} SCOP: d.115.1.2 PDB: 1k49_A 1k4l_A 1k4o_A 1k4p_A
Probab=100.00  E-value=0  Score=528.21  Aligned_cols=209  Identities=45%  Similarity=0.774  Sum_probs=201.1

Q ss_pred             CCCCCCC---CHHHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEEHHHCCHHHHHHHHHHCCCCEEEECCHHHHHHHHCC
Q ss_conf             9877577---9566999999996898299996778988701334844599999999997089945861468999874036
Q gi|254780359|r    1 MKQKKSL---DERYIEDVIQSFQKGEMVIVTDADDRENEADLVLAAIHCTSEKMAFIIRHTCGIVCTPMPFHTAHKLKLN   77 (210)
Q Consensus         1 ~~~~~~~---~~~~ie~ai~al~~G~~Viv~D~~dREnEgDlv~~Ae~vt~e~i~fm~~~~~Glic~al~~~~~~~L~Lp   77 (210)
                      |+...+|   .|++|++||++||+|+||||+||+|||||||||++|+++|+++|+||++|++|+||+|+++++|++|+||
T Consensus         1 ~~~~~~~~~~~f~~Ie~ai~al~~G~~Viv~Dd~dRE~EgDlv~~Ae~~t~e~i~fm~~~~~Glic~a~~~~~~~~L~Lp   80 (233)
T 1k4i_A            1 MPSTDSIPKSNFDAIPDVIQAFKNGEFVVVLDDPSRENEADLIIAAESVTTEQMAFMVRHSSGLICAPLTPERTTALDLP   80 (233)
T ss_dssp             -----------CCCHHHHHHHHHTTCCEEEECCTTTTCCEEEEEEGGGCCHHHHHHHHHHBCSCCEEEECHHHHHHTTCC
T ss_pred             CCCCCCCCCCCCCCHHHHHHHHHCCCEEEEEECCCCCCCCCEEEEHHHCCHHHHHHHHHHCCCCEEEEECHHHHHCCCCC
T ss_conf             99756587124861999999998899699996799887515897867699999999999689868996488887126886


Q ss_pred             CCCCCCCCCCCCCEEEEEECCC-CCCCCCCHHHHHHHHHHHHHHHCCHHHHCCCCCCCEEEECCCCCCCCCCHHHHHHHH
Q ss_conf             4324456656652178872034-777899988999999999842013243138985001001269824667802677699
Q gi|254780359|r   78 PMVLENESVHKTAFTVSVDSKH-GITTGISADDRAYTIKNLANPHSIADNFVRPGHIFPLISRDGGVLVRPGHTEASVDL  156 (210)
Q Consensus        78 ~m~~~n~~~~~taFtvsvd~~~-g~tTGISa~DRa~TIr~la~~~~~~~df~~PGHV~pL~a~~gGvl~R~GHTEaavdL  156 (210)
                      +|+..|.+.++++|++||++++ +++|||||+|||+|||+|++++++|+||++|||||||++++|||++|+|||||||||
T Consensus        81 ~m~~~~~~~~~~~~~~sv~~~~~~~~TGISa~DRa~Tir~la~~~~~~~df~~PGHvfpL~a~~gGvl~R~GHTEaavdL  160 (233)
T 1k4i_A           81 QMVTHNADPRGTAYTVSVDAEHPSTTTGISAHDRALACRMLAAPDAQPSHFRRPGHVFPLRAVAGGVRARRGHTEAGVEL  160 (233)
T ss_dssp             BSCSSCCCSSCCCBBCCEEECSTTCSSSCSHHHHHHHHHHHHCTTCCGGGEEEEEEEEEEECCTTHHHHCCSHHHHHHHH
T ss_pred             CCCCCCCCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCHHHHCCCCCCCEEEECCCCCCCCCCHHHHHHHH
T ss_conf             41245666555765304763057766787999999999996388888455259976540355269826889788999999


Q ss_pred             HHHCCCCCEEEEEEEECCCC-----------CCCCHHHHHHHHHHHCCCEEEHHHHHHHHHHCC
Q ss_conf             88769960059888536887-----------505989999999983890777999999998437
Q gi|254780359|r  157 CKITGLPPIAVICELVNDDG-----------TIKKGKQVIEFSKKYDLKIISVQDLIAWRKKKE  209 (210)
Q Consensus       157 ~~lAGl~P~~vi~Eil~~~G-----------~~~~~~~~~~fA~~~~lp~i~i~dli~yr~~~e  209 (210)
                      |+|||++|++|||||||++|           .||+++++++||++|+||+++|+|||+||+++|
T Consensus       161 ~~lAGl~P~avicEil~d~g~~~~~~~~~~g~ma~~~~l~~fA~~~~lp~isi~dli~yr~~~e  224 (233)
T 1k4i_A          161 CRLAGKRPVAVISEIVDDGQEVEGRAVRAAPGMLRGDECVAFARRWGLKVCTIEDMIAHVEKTE  224 (233)
T ss_dssp             HHHTTCCSBEEEEEBEECCEECTTSSCEESCEECCHHHHHHHHHHTTCEEEEHHHHHHHHHHHH
T ss_pred             HHHCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEHHHHHHHHHHCC
T ss_conf             9980999728999994089864542233431224539999999983997998999999998501


No 4  
>1tks_A 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin biosynthesis, synthetic gene, isomerase; 1.60A {Candida albicans SC5314} SCOP: d.115.1.2 PDB: 1tku_A* 2ris_A 2riu_A*
Probab=100.00  E-value=0  Score=518.38  Aligned_cols=201  Identities=44%  Similarity=0.754  Sum_probs=196.9

Q ss_pred             CCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEEHHHCCHHHHHHHHHHCCCCEEEECCHHHHHHHHCCCCCCCCCC
Q ss_conf             77956699999999689829999677898870133484459999999999708994586146899987403643244566
Q gi|254780359|r    6 SLDERYIEDVIQSFQKGEMVIVTDADDRENEADLVLAAIHCTSEKMAFIIRHTCGIVCTPMPFHTAHKLKLNPMVLENES   85 (210)
Q Consensus         6 ~~~~~~ie~ai~al~~G~~Viv~D~~dREnEgDlv~~Ae~vt~e~i~fm~~~~~Glic~al~~~~~~~L~Lp~m~~~n~~   85 (210)
                      +| |++||+||++||+|+||||+||++||||||||+||+++|+++|+||++|++|+||+|+++++|++|+||+|+..|.+
T Consensus         3 ~~-~~~ie~ai~alk~G~~Viv~Dd~~RE~EgDlv~~Ae~~t~e~i~fm~~~~~Glic~a~~~~~~~~L~lp~m~~~~~~   81 (204)
T 1tks_A            3 NI-FTPIEEALEAYKNGEFLIVMDDEDRENEGDLIMAAELITQEKMAFLVRYSSGYVCVPLSEERANQLELPPMLANRSD   81 (204)
T ss_dssp             CC-SCCHHHHHHHHHTTCCEEEESSSCTTCBCEEEEEGGGCCHHHHHHHHHTBCSCCEEEEEHHHHHHTTCCBSCC----
T ss_pred             CC-CCCHHHHHHHHHCCCEEEEEECCCCCCCCCEEEEHHHCCHHHHHHHHHHCCCCEEEEECHHHHHHCCCCCCCCCCCC
T ss_conf             75-34599999999889969998689987740589786869999999999958977999748899922689864545678


Q ss_pred             CCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHCCCCCE
Q ss_conf             56652178872034777899988999999999842013243138985001001269824667802677699887699600
Q gi|254780359|r   86 VHKTAFTVSVDSKHGITTGISADDRAYTIKNLANPHSIADNFVRPGHIFPLISRDGGVLVRPGHTEASVDLCKITGLPPI  165 (210)
Q Consensus        86 ~~~taFtvsvd~~~g~tTGISa~DRa~TIr~la~~~~~~~df~~PGHV~pL~a~~gGvl~R~GHTEaavdL~~lAGl~P~  165 (210)
                      .++++|++||||++|++||||++||++|||.|++++++|+||++|||||||++++|||++|+|||||+||||+|||++|+
T Consensus        82 ~~~~~f~v~vd~~~g~~TGISa~DRa~Tir~la~~~~~~~df~~PGHv~pl~a~~ggvl~R~GHTEaavdL~~lAGl~P~  161 (204)
T 1tks_A           82 RHGTAYTITCDFAEGTTTGISAHDRALTTRSLANPNSKPQDFIKPGHILPLRAVPGLLKKRRGHTEAAVQLSTLAGLQPA  161 (204)
T ss_dssp             --CCCBBCCEEESTTCSSSCSHHHHHHHHHHHHCTTCCGGGEEEEEEEEEEEECTTGGGTCCCHHHHHHHHHHHTTSCSB
T ss_pred             CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHCCCCCCCCCCEECCCCCCCCCCHHHHHHHHHHHCCCCCE
T ss_conf             78885354421667888997899999999998667998756317998670102457775678888999999998399961


Q ss_pred             EEEEEEEC-CCCCCCCHHHHHHHHHHHCCCEEEHHHHHHHHHH
Q ss_conf             59888536-8875059899999999838907779999999984
Q gi|254780359|r  166 AVICELVN-DDGTIKKGKQVIEFSKKYDLKIISVQDLIAWRKK  207 (210)
Q Consensus       166 ~vi~Eil~-~~G~~~~~~~~~~fA~~~~lp~i~i~dli~yr~~  207 (210)
                      +||||||+ ++|+||+.+++++||++|+||+++|+|||+||+|
T Consensus       162 avicEil~d~dG~~~~~~~~~~fA~~~~l~~i~i~dli~yr~k  204 (204)
T 1tks_A          162 GVICELVRDEDGLMMRLDDCIQFGKKHGIKIININQLVEYISK  204 (204)
T ss_dssp             EEEEEBBCTTTCCBCBHHHHHHHHHHHTCCEEEHHHHHHHHCC
T ss_pred             EEEEEEEECCCCCCCCHHHHHHHHHHCCCCEEEHHHHHHHHHC
T ss_conf             9999997889988658899999999849969989999999859


No 5  
>3n2l_A OPRT, oprtase, orotate phosphoribosyltransferase; pyrimidine ribonucleotide biosynthesis, infectious diseases; 2.10A {Vibrio cholerae}
Probab=90.75  E-value=0.83  Score=24.92  Aligned_cols=76  Identities=16%  Similarity=0.295  Sum_probs=56.7

Q ss_pred             CCCCCCEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHCCCEE---EHHHHHHHH
Q ss_conf             89850010012698246678026776998876996005988853688750598999999998389077---799999999
Q gi|254780359|r  129 RPGHIFPLISRDGGVLVRPGHTEASVDLCKITGLPPIAVICELVNDDGTIKKGKQVIEFSKKYDLKII---SVQDLIAWR  205 (210)
Q Consensus       129 ~PGHV~pL~a~~gGvl~R~GHTEaavdL~~lAGl~P~~vi~Eil~~~G~~~~~~~~~~fA~~~~lp~i---~i~dli~yr  205 (210)
                      .+|.|  |+-.+  |..--|-.--++++.+-+|..+++++|=+=-..|.--+...+.++.+++|+|+.   +++||++|.
T Consensus       141 ~~grV--lIVDD--ViTTG~Si~~ai~~l~~~G~~V~~v~vivDR~~gg~~~~~a~~~~~~~~gi~~~Sl~tl~dl~~~l  216 (238)
T 3n2l_A          141 LEGRV--MLVDD--VITAGTAIRESMELIQANKADLAGVLVAIDRQEKGKGELSAIQEVERDFGCAVISIVSLTDLITYL  216 (238)
T ss_dssp             CCSEE--EEECS--CCSSSHHHHHHHHHHHHTTCEEEEEEEEEECCCBCSSSSBHHHHHHHHHCCEEEEEEEHHHHHHHH
T ss_pred             CCCCE--EEEEE--EECCCCCHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCHHHHHHHHHHCCCEEEEEEEHHHHHHHH
T ss_conf             77767--99976--516684589999999987994899999865021554202289999997498299981399999999


Q ss_pred             HHC
Q ss_conf             843
Q gi|254780359|r  206 KKK  208 (210)
Q Consensus       206 ~~~  208 (210)
                      +++
T Consensus       217 ~~~  219 (238)
T 3n2l_A          217 EQQ  219 (238)
T ss_dssp             HSS
T ss_pred             HHC
T ss_conf             985


No 6  
>3mjd_A Orotate phosphoribosyltransferase; IDP02311, csgid, structural genomics, center for structural genomics of infectious diseases; 1.90A {Francisella tularensis}
Probab=85.55  E-value=2.1  Score=22.40  Aligned_cols=78  Identities=12%  Similarity=0.147  Sum_probs=54.7

Q ss_pred             CCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEEEECCCC-CCCCHHHHHHHHHHHCCCEEE---HHHHHH
Q ss_conf             3898500100126982466780267769988769960059888536887-505989999999983890777---999999
Q gi|254780359|r  128 VRPGHIFPLISRDGGVLVRPGHTEASVDLCKITGLPPIAVICELVNDDG-TIKKGKQVIEFSKKYDLKIIS---VQDLIA  203 (210)
Q Consensus       128 ~~PGHV~pL~a~~gGvl~R~GHTEaavdL~~lAGl~P~~vi~Eil~~~G-~~~~~~~~~~fA~~~~lp~i~---i~dli~  203 (210)
                      ..||.-..++-.   |...-|-...+++..+-+|..+++++|-+=-.+| .-......+++.+++|+|+.|   ++||++
T Consensus       133 ~~~g~~VlIVDD---ViTTG~S~~~ai~~l~~~G~~V~~v~vivDR~egg~~~~~~a~~~~~~~~gi~~~Sl~~l~di~~  209 (232)
T 3mjd_A          133 DMTNKKVLLIDD---VMTAGTAFYESYNKLKIINAKIAGVVLSIDRQEKAKDSDISATKKISQDFNIPVLAVTNFESIFE  209 (232)
T ss_dssp             CCTTCEEEEECS---CCSSSHHHHHHHHHHHTTTCEEEEEEEEEECCBCCTTSSSCHHHHHHHHHCCCEEEEEEHHHHHH
T ss_pred             CCCCCCEEEEEE---EECCCCCHHHHHHHHHHCCCEEEEEEEEEEHHHCCCCCCHHHHHHHHHHCCCCEEEECCHHHHHH
T ss_conf             566551589831---03568578999999998699799999999801236433336899999966986999775999999


Q ss_pred             HHHHC
Q ss_conf             99843
Q gi|254780359|r  204 WRKKK  208 (210)
Q Consensus       204 yr~~~  208 (210)
                      |.+.+
T Consensus       210 ~~~~~  214 (232)
T 3mjd_A          210 YVKEN  214 (232)
T ss_dssp             HHHHH
T ss_pred             HHHHC
T ss_conf             99862


No 7  
>1y0n_A Hypothetical UPF0270 protein PA3463; MCSG, midwest center for structural genomics, protein structure initiative, PSI; 2.00A {Pseudomonas aeruginosa PAO1} SCOP: d.291.1.1
Probab=74.50  E-value=4.1  Score=20.54  Aligned_cols=39  Identities=18%  Similarity=0.334  Sum_probs=28.7

Q ss_pred             CCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEEHHHCC
Q ss_conf             5779566999999996898299996778988701334844599
Q gi|254780359|r    5 KSLDERYIEDVIQSFQKGEMVIVTDADDRENEADLVLAAIHCT   47 (210)
Q Consensus         5 ~~~~~~~ie~ai~al~~G~~Viv~D~~dREnEgDlv~~Ae~vt   47 (210)
                      .++ ...|+++..+|++|+.+|+||.+.   |.-=+++.+-+.
T Consensus        34 ~sl-~~Kv~qv~~qL~~G~~~I~fde~~---Es~~I~~k~~l~   72 (78)
T 1y0n_A           34 TPL-DVRVERARHALRRGEAVILFDPES---QQCQLMLRSEVP   72 (78)
T ss_dssp             CCH-HHHHHHHHHHHHTTSEEEEECTTT---CCEEEEEGGGSC
T ss_pred             CCH-HHHHHHHHHHHHCCCEEEEECCCC---CEEEEEEHHHHH
T ss_conf             139-999999999998699899987988---747406599846


No 8  
>1lh0_A OMP synthase; loop closure, monomer closure, orotate phosphoribosyltransferase; HET: ORO PRP; 2.00A {Salmonella typhimurium} SCOP: c.61.1.1 PDB: 1opr_A* 1sto_A* 1oro_A
Probab=72.93  E-value=5.4  Score=19.84  Aligned_cols=76  Identities=21%  Similarity=0.370  Sum_probs=56.5

Q ss_pred             CCCCCCEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHCCCEE---EHHHHHHHH
Q ss_conf             89850010012698246678026776998876996005988853688750598999999998389077---799999999
Q gi|254780359|r  129 RPGHIFPLISRDGGVLVRPGHTEASVDLCKITGLPPIAVICELVNDDGTIKKGKQVIEFSKKYDLKII---SVQDLIAWR  205 (210)
Q Consensus       129 ~PGHV~pL~a~~gGvl~R~GHTEaavdL~~lAGl~P~~vi~Eil~~~G~~~~~~~~~~fA~~~~lp~i---~i~dli~yr  205 (210)
                      .+|.|  |+-.+  |...-|-.--+++..+-+|..+++++|=+=-..|.........++.+++|+|+.   +++||++|.
T Consensus       116 ~~~rV--liVeD--ViTTG~S~~e~i~~l~~~G~~V~~v~vivDR~~g~~~~~~~~~e~~~~~Gi~~~sl~t~~dll~~l  191 (213)
T 1lh0_A          116 LQGRV--MLVDD--VITAGTAIRESMEIIQAHGATLAGVLISLDRQERGRGEISAIQEVERDYGCKVISIITLKDLIAYL  191 (213)
T ss_dssp             CCSEE--EEECS--CCSSSCHHHHHHHHHHHTTCEEEEEEEEEECCBBCSSSSBHHHHHHHHHCCEEEEEEEHHHHHHHH
T ss_pred             CCCCE--EEEEE--CCCCCHHHHHHHHHHHHCCCEEEEEEEEEEECCCCCCHHHHHHHHHHHCCCEEEEECCHHHHHHHH
T ss_conf             77848--99972--314256589999999987997999999987423664216589999986597399973099999999


Q ss_pred             HHC
Q ss_conf             843
Q gi|254780359|r  206 KKK  208 (210)
Q Consensus       206 ~~~  208 (210)
                      ..+
T Consensus       192 ~~~  194 (213)
T 1lh0_A          192 EEK  194 (213)
T ss_dssp             HHC
T ss_pred             HHC
T ss_conf             976


No 9  
>2zxr_A Single-stranded DNA specific exonuclease RECJ; DNA repair, hydrolase; 2.15A {Thermus thermophilus} PDB: 2zxo_A 2zxp_A 1ir6_A
Probab=66.95  E-value=7.2  Score=19.04  Aligned_cols=91  Identities=13%  Similarity=0.101  Sum_probs=57.2

Q ss_pred             HHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEEHHHCCHHH-HHHHHHHCCCCEEEECCHHHHHHHHCCCCCCCCCCCCC
Q ss_conf             66999999996898299996778988701334844599999-99999708994586146899987403643244566566
Q gi|254780359|r   10 RYIEDVIQSFQKGEMVIVTDADDRENEADLVLAAIHCTSEK-MAFIIRHTCGIVCTPMPFHTAHKLKLNPMVLENESVHK   88 (210)
Q Consensus        10 ~~ie~ai~al~~G~~Viv~D~~dREnEgDlv~~Ae~vt~e~-i~fm~~~~~Glic~al~~~~~~~L~Lp~m~~~n~~~~~   88 (210)
                      .-++...+|+++|+.|+|+-|-|    .|      -+|... +....+.-+.-+..-+|...-+..||..-....-. .+
T Consensus        60 ~Av~ri~~Ai~~~ekI~I~GDYD----vD------GiTStaIL~~~L~~lg~~v~~yIP~R~~eGYGl~~~~i~~~~-eg  128 (666)
T 2zxr_A           60 EAAALLEEALRQGKRIRVHGDYD----AD------GLTGTAILVRGLAALGADVHPFIPHRLEEGYGVLMERVPEHL-EA  128 (666)
T ss_dssp             HHHHHHHHHHHTTCEEEEECCSS----HH------HHHHHHHHHHHHHHTTCEEEECCC---------------------
T ss_pred             HHHHHHHHHHHCCCEEEEEEECC----CC------HHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHH-HC
T ss_conf             99999999997699899997468----41------689999999999988996599888976568886999999986-08


Q ss_pred             CCEEEEEECCCCCCCCCCHHHHHHHHHHH
Q ss_conf             52178872034777899988999999999
Q gi|254780359|r   89 TAFTVSVDSKHGITTGISADDRAYTIKNL  117 (210)
Q Consensus        89 taFtvsvd~~~g~tTGISa~DRa~TIr~l  117 (210)
                      ..--|+||      .|||+.+...-++.+
T Consensus       129 ~~LiITvD------cGi~a~e~i~~a~~~  151 (666)
T 2zxr_A          129 SDLFLTVD------CGITNHAELRELLEN  151 (666)
T ss_dssp             CCEEEESC------CC-------------
T ss_pred             CCEEEEEC------CCCCCHHHHHHHHHC
T ss_conf             99899964------882339999988867


No 10 
>2ps1_A Orotate phosphoribosyltransferase 1; alpha beta, oprtase-OA-PRPP complex; HET: ORO PRP; 1.75A {Saccharomyces cerevisiae} PDB: 2pry_A* 2prz_A*
Probab=57.95  E-value=10  Score=18.02  Aligned_cols=77  Identities=13%  Similarity=0.158  Sum_probs=51.3

Q ss_pred             CCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEEEECCCCCC----CCHHHHHHHHHHHCCCE---EEHHH
Q ss_conf             389850010012698246678026776998876996005988853688750----59899999999838907---77999
Q gi|254780359|r  128 VRPGHIFPLISRDGGVLVRPGHTEASVDLCKITGLPPIAVICELVNDDGTI----KKGKQVIEFSKKYDLKI---ISVQD  200 (210)
Q Consensus       128 ~~PGHV~pL~a~~gGvl~R~GHTEaavdL~~lAGl~P~~vi~Eil~~~G~~----~~~~~~~~fA~~~~lp~---i~i~d  200 (210)
                      ..||-=..++-.   |..--|-...+++..+-+|..+++++|=+=.+++..    -......++.+++|+|+   ++++|
T Consensus       122 ~~~G~~VlIVDD---ViTTG~S~~eai~~l~~~G~~V~~~~vivDR~e~g~~~~~~~~~a~~~~~~~~gi~v~Sl~~l~~  198 (226)
T 2ps1_A          122 ALENKRILIIDD---VMTAGTAINEAFEIISNAKGQVVGSIIALDRQEVVSTDDKEGLSATQTVSKKYGIPVLSIVSLIH  198 (226)
T ss_dssp             CCTTCEEEEEEE---EESSSHHHHHHHHHHHHTTCEEEEEEEEEECCBBSCTTCSSCCBHHHHHHHHHTCCEEEEEEHHH
T ss_pred             CCCCCEEEEEEE---EECCCCCHHHHHHHHHHCCCEEEEEEEEEECHHCCCCCCCCCCHHHHHHHHHCCCCEEEECCHHH
T ss_conf             477970799861---03568458999999998799899999999711204555422101799999864981999734999


Q ss_pred             HHHHHHH
Q ss_conf             9999984
Q gi|254780359|r  201 LIAWRKK  207 (210)
Q Consensus       201 li~yr~~  207 (210)
                      |++|.+.
T Consensus       199 li~~~~~  205 (226)
T 2ps1_A          199 IITYLEG  205 (226)
T ss_dssp             HHHHHGG
T ss_pred             HHHHHHC
T ss_conf             9999865


No 11 
>3p04_A Uncharacterized BCR; SEPF homolog, DUF552, PSI-2, NESG, structural genomics, PROT structure initiative; 2.20A {Corynebacterium glutamicum}
Probab=55.22  E-value=7.9  Score=18.79  Aligned_cols=43  Identities=14%  Similarity=0.180  Sum_probs=30.6

Q ss_pred             CCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEEHHHCCHHHHHHHHHHCCCCEE
Q ss_conf             795669999999968982999967789887013348445999999999970899458
Q gi|254780359|r    7 LDERYIEDVIQSFQKGEMVIVTDADDRENEADLVLAAIHCTSEKMAFIIRHTCGIVC   63 (210)
Q Consensus         7 ~~~~~ie~ai~al~~G~~Viv~D~~dREnEgDlv~~Ae~vt~e~i~fm~~~~~Glic   63 (210)
                      -+|+..+++.++||+|++|+|-=              +.+.++.-..++-..+|.++
T Consensus        13 ~sf~da~~i~~~lr~~~~VivNl--------------~~ld~~~aqRiiDF~sG~~y   55 (87)
T 3p04_A           13 HSFEDAQVIGGAFRDGDAVVFDM--------------SLLSREEARRIVDFAAGLCF   55 (87)
T ss_dssp             SSGGGHHHHHHHHHTTCCEEEEC--------------TTSCHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHCCCEEEEEC--------------CCCCHHHHHHHHHHHCCCEE
T ss_conf             85999999999997699799997--------------78998997779998723305


No 12 
>2wns_A Orotate phosphoribosyltransferase; alternative splicing, multifunctional enzyme, lyase, polymorphism, decarboxylase, phosphoprotein; HET: OMP; 1.90A {Homo sapiens}
Probab=43.38  E-value=18  Score=16.58  Aligned_cols=71  Identities=14%  Similarity=0.277  Sum_probs=46.4

Q ss_pred             CCCCCCEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHCCCE---EEHHHHHHHH
Q ss_conf             8985001001269824667802677699887699600598885368875059899999999838907---7799999999
Q gi|254780359|r  129 RPGHIFPLISRDGGVLVRPGHTEASVDLCKITGLPPIAVICELVNDDGTIKKGKQVIEFSKKYDLKI---ISVQDLIAWR  205 (210)
Q Consensus       129 ~PGHV~pL~a~~gGvl~R~GHTEaavdL~~lAGl~P~~vi~Eil~~~G~~~~~~~~~~fA~~~~lp~---i~i~dli~yr  205 (210)
                      .||--..++-.   +...-|-...++++.+-+|..+++++|-+ |- +.  ..  ...|+ ++|+|+   ++++||++|.
T Consensus       109 ~~g~~VlIVDD---vitTG~T~~~ai~~l~~~G~~v~~v~viv-dr-~~--~~--~~~l~-~~gi~~~sL~~l~dl~~~~  178 (205)
T 2wns_A          109 NPGETCLIIED---VVTSGSSVLETVEVLQKEGLKVTDAIVLL-DR-EQ--GG--KDKLQ-AHGIRLHSVCTLSKMLEIL  178 (205)
T ss_dssp             CTTCBEEEEEE---EESSSHHHHHHHHHHHHTTCBCCEEEEEE-EC-CS--SH--HHHHH-TTTCEEEEEEEHHHHHHHH
T ss_pred             CCCCEEEEEEE---EHHCCCCHHHHHHHHHHCCCEEEEEEEEE-EC-CC--CH--HHHHH-HCCCCEEEECCHHHHHHHH
T ss_conf             66645999961---02127067989999986898899999999-77-61--65--99999-7799499975099999999


Q ss_pred             HHCC
Q ss_conf             8437
Q gi|254780359|r  206 KKKE  209 (210)
Q Consensus       206 ~~~e  209 (210)
                      +.+.
T Consensus       179 ~~~~  182 (205)
T 2wns_A          179 EQQK  182 (205)
T ss_dssp             HHTT
T ss_pred             HHCC
T ss_conf             9869


No 13 
>2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1; HET: MSE; 1.81A {Vibrio parahaemolyticus rimd 2210633}
Probab=41.56  E-value=19  Score=16.40  Aligned_cols=50  Identities=20%  Similarity=0.298  Sum_probs=34.7

Q ss_pred             CCCHHHHHHHHHHHCCCCCEEEEEEEEC-CCCCCCCHHHHHHHHHHHCCCE
Q ss_conf             6780267769988769960059888536-8875059899999999838907
Q gi|254780359|r  146 RPGHTEASVDLCKITGLPPIAVICELVN-DDGTIKKGKQVIEFSKKYDLKI  195 (210)
Q Consensus       146 R~GHTEaavdL~~lAGl~P~~vi~Eil~-~~G~~~~~~~~~~fA~~~~lp~  195 (210)
                      ....-|.+++=.+-.|+.|.+|++-.-+ +.|..-+.+++-+.+++|++.+
T Consensus       241 d~~~L~~~i~~~~~~g~~p~~VvataGTT~~GaiDpl~eIa~i~~~~~~wl  291 (497)
T 2qma_A          241 DITKLDEVIAQAKAEGLIPFAIVGTAGTTDHGAIDDLDFIADMAVKHDMWM  291 (497)
T ss_dssp             CGGGHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHHTCEE
T ss_pred             CHHHHHHHHHHHHHCCCCCEEEEECCCCCCCEEECCHHHHHHHHHHCCEEE
T ss_conf             899999999988864997269984257778335149999999985314036


No 14 
>1kor_A Argininosuccinate synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: ANP ARG; 1.95A {Thermus thermophilus} SCOP: c.26.2.1 d.210.1.1 PDB: 1j1z_A* 1j21_A* 1kh1_A 1kh2_A* 1kh3_A* 1j20_A*
Probab=36.27  E-value=22  Score=16.00  Aligned_cols=45  Identities=16%  Similarity=0.239  Sum_probs=24.5

Q ss_pred             HHHHHHHHHCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHCCCEEE
Q ss_conf             67769988769960059888536887505989999999983890777
Q gi|254780359|r  151 EASVDLCKITGLPPIAVICELVNDDGTIKKGKQVIEFSKKYDLKIIS  197 (210)
Q Consensus       151 EaavdL~~lAGl~P~~vi~Eil~~~G~~~~~~~~~~fA~~~~lp~i~  197 (210)
                      ..--+++-.+=-+...||+..-+  .++.++++..+||++|++|+-.
T Consensus       122 QvRFe~~~~al~P~l~iiaPwRd--~~~~sR~~~i~ya~~~gIpv~~  166 (400)
T 1kor_A          122 QVRFELTAYALKPDIKVIAPWRE--WSFQGRKEMIAYAEAHGIPVPV  166 (400)
T ss_dssp             HHHHHHHHHHHCTTCEEECGGGT--CCCCSHHHHHHHHHHTTCCCC-
T ss_pred             HHHHHHHHHHHCCCCEEECCCHH--CCCCCHHHHHHHHHHCCCCCCC
T ss_conf             36688899975999748501010--2536679999999984999865


No 15 
>1hru_A YRDC gene product; protein folding, structural genomics, RNA, SUA5, PSI, protein structure initiative, midwest center for structural genomics; 2.00A {Escherichia coli} SCOP: d.115.1.1
Probab=36.13  E-value=23  Score=15.87  Aligned_cols=63  Identities=8%  Similarity=0.124  Sum_probs=39.5

Q ss_pred             CCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEEHHHCCHHHHHHH---HHH--CCCCEEEECCHHHHHHH
Q ss_conf             7795669999999968982999967789887013348445999999999---970--89945861468999874
Q gi|254780359|r    6 SLDERYIEDVIQSFQKGEMVIVTDADDRENEADLVLAAIHCTSEKMAFI---IRH--TCGIVCTPMPFHTAHKL   74 (210)
Q Consensus         6 ~~~~~~ie~ai~al~~G~~Viv~D~~dREnEgDlv~~Ae~vt~e~i~fm---~~~--~~Glic~al~~~~~~~L   74 (210)
                      +++.+.|++|++.|++|+.|++=-|      +-.-+.+..-+++.+..+   .+.  ...+..+.-+.+.+.++
T Consensus         4 n~~~~~i~~a~~~L~~G~iv~~PTd------t~Ygl~~~a~n~~av~ri~~lK~R~~~kp~~vl~~~~~~~~~~   71 (188)
T 1hru_A            4 NLQRDAIAAAIDVLNEERVIAYPTE------AVFGVGCDPDSETAVMRLLELKQRPVDKGLILIAANYEQLKPY   71 (188)
T ss_dssp             HHHHHHHHHHHHHHHTTCCEEEECS------SSEEEEECTTCHHHHHHHHHHHTCCGGGCCEEEESSHHHHGGG
T ss_pred             CCCHHHHHHHHHHHHCCCEEEEECC------CHHEEEEECCCHHHHHHHHHHHCCCCCCCCEEEEEHHHHHHHH
T ss_conf             7488999999999977998999879------6033788089989999999983899667834886457777666


No 16 
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=33.57  E-value=20  Score=16.25  Aligned_cols=42  Identities=5%  Similarity=0.128  Sum_probs=27.5

Q ss_pred             HHCCCCCEEEEEEEECC-CCCCCCHHHHHHHHHHHCCCEEEHH
Q ss_conf             87699600598885368-8750598999999998389077799
Q gi|254780359|r  158 KITGLPPIAVICELVND-DGTIKKGKQVIEFSKKYDLKIISVQ  199 (210)
Q Consensus       158 ~lAGl~P~~vi~Eil~~-~G~~~~~~~~~~fA~~~~lp~i~i~  199 (210)
                      ......|..++.--.|- +..--..+++.+|++++++|++.++
T Consensus       105 ~~~~~~piilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~S  147 (172)
T 2erx_A          105 GDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETS  147 (172)
T ss_dssp             C---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECB
T ss_pred             CCCCCCCEEEEECCCCHHHCCCCCHHHHHHHHHHCCCEEEEEC
T ss_conf             6556776899932544011256459999999998498799982


No 17 
>2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A*
Probab=32.45  E-value=26  Score=15.50  Aligned_cols=48  Identities=21%  Similarity=0.252  Sum_probs=30.8

Q ss_pred             CHHHHHHHHHHHCCCCCEEEEEEEE-CCCCCCCCHHHHHHHHHHHCCCE
Q ss_conf             8026776998876996005988853-68875059899999999838907
Q gi|254780359|r  148 GHTEASVDLCKITGLPPIAVICELV-NDDGTIKKGKQVIEFSKKYDLKI  195 (210)
Q Consensus       148 GHTEaavdL~~lAGl~P~~vi~Eil-~~~G~~~~~~~~~~fA~~~~lp~  195 (210)
                      ..-|.+++=.+-+|+.|.+|++..= ...|..-+.+++.+++++|++-+
T Consensus       230 ~~L~~~I~~~~~~G~~p~~VvataGtT~tGaiDpl~~i~~i~~~~~~wl  278 (504)
T 2okj_A          230 ADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDPIQEIADICEKYNLWL  278 (504)
T ss_dssp             HHHHHHHHHHHHTTCEEEEEEECBSCSSSCCBCCHHHHHHHHHHHTCEE
T ss_pred             HHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHCCEE
T ss_conf             9999999999866997669994378767601277999999999839858


No 18 
>3m3h_A OPRT, oprtase, orotate phosphoribosyltransferase; pyrimidine ribonucleotide biosynthesis, structural genomics, infectious diseases; 1.75A {Bacillus anthracis} PDB: 3osc_A*
Probab=31.34  E-value=28  Score=15.38  Aligned_cols=72  Identities=10%  Similarity=0.109  Sum_probs=43.7

Q ss_pred             CCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHCCCE---EEHHHHHHH
Q ss_conf             38985001001269824667802677699887699600598885368875059899999999838907---779999999
Q gi|254780359|r  128 VRPGHIFPLISRDGGVLVRPGHTEASVDLCKITGLPPIAVICELVNDDGTIKKGKQVIEFSKKYDLKI---ISVQDLIAW  204 (210)
Q Consensus       128 ~~PGHV~pL~a~~gGvl~R~GHTEaavdL~~lAGl~P~~vi~Eil~~~G~~~~~~~~~~fA~~~~lp~---i~i~dli~y  204 (210)
                      ..||--..++-.   |..--|-...++++.+-+|..+++++|=+ |...     +...+.-+++|+|+   ++.+||++|
T Consensus       134 ~~~G~~VlIVDD---ViTTG~Si~~ai~~lr~~G~~V~~v~viv-dr~~-----~gg~e~l~~~Gv~~~sL~t~~dl~~~  204 (234)
T 3m3h_A          134 AEKGQKVVVVED---LISTGGSAITCVEALREAGCEVLGIVSIF-TYEL-----EAGKEKLEAANVASYSLSDYSALTEV  204 (234)
T ss_dssp             CCTTCEEEEEEE---EESSSHHHHHHHHHHHHTTCEEEEEEEEE-ECCC-----HHHHHHHHHTTCCEEESSCHHHHHHH
T ss_pred             CCCCCEEEEEEE---EECCCCCHHHHHHHHHHCCCEEEEEEEEE-ECCC-----HHHHHHHHHCCCCEEEECCHHHHHHH
T ss_conf             457955999853---00347227999999997899799999999-8774-----40699999679978997769999999


Q ss_pred             HHHC
Q ss_conf             9843
Q gi|254780359|r  205 RKKK  208 (210)
Q Consensus       205 r~~~  208 (210)
                      ..++
T Consensus       205 ~~~~  208 (234)
T 3m3h_A          205 AAEK  208 (234)
T ss_dssp             HHHT
T ss_pred             HHHC
T ss_conf             9985


No 19 
>3erv_A Putative C39-like peptidase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.10A {Bacillus anthracis}
Probab=31.30  E-value=27  Score=15.41  Aligned_cols=25  Identities=20%  Similarity=0.502  Sum_probs=14.3

Q ss_pred             CCHHHHHHHHHHCCCCEEEECCH-HHHHHH
Q ss_conf             99999999997089945861468-999874
Q gi|254780359|r   46 CTSEKMAFIIRHTCGIVCTPMPF-HTAHKL   74 (210)
Q Consensus        46 vt~e~i~fm~~~~~Glic~al~~-~~~~~L   74 (210)
                      |-+..++.++++- |.   .+++ +.++.+
T Consensus        50 C~~tSlaMvL~y~-G~---~vs~~~la~~~   75 (236)
T 3erv_A           50 CEVTSLAMMLQYA-GI---TVDKMKLANEI   75 (236)
T ss_dssp             HHHHHHHHHHHHT-TC---CCCHHHHHHHS
T ss_pred             CHHHHHHHHHHHC-CC---CCCHHHHHHHH
T ss_conf             2899999999970-99---99999999987


No 20 
>2gez_A L-asparaginase alpha subunit; isoaspartyl aminopeptidase, NTN-hydrolase, autoproteolysis, taspase, sodium binding; 2.60A {Lupinus luteus}
Probab=29.78  E-value=11  Score=17.99  Aligned_cols=66  Identities=17%  Similarity=0.156  Sum_probs=40.4

Q ss_pred             EECCCCCCCCCCHHHHHHHHHHHCCCCCEEEEE------------EEEC-CCCCCCCHHHHHHHHHHHCCCEEEHHHHH
Q ss_conf             012698246678026776998876996005988------------8536-88750598999999998389077799999
Q gi|254780359|r  137 ISRDGGVLVRPGHTEASVDLCKITGLPPIAVIC------------ELVN-DDGTIKKGKQVIEFSKKYDLKIISVQDLI  202 (210)
Q Consensus       137 ~a~~gGvl~R~GHTEaavdL~~lAGl~P~~vi~------------Eil~-~~G~~~~~~~~~~fA~~~~lp~i~i~dli  202 (210)
                      -+--|+++...|..|.--.++.=..+.-.+|.|            .+|+ .+-.++-++.+.+||+++|+++++-+.++
T Consensus        69 NAG~Gs~~n~dG~velDA~iMdG~~~~~GaV~~v~~vknPi~lAr~vm~~t~h~~LvG~gA~~fA~~~G~~~~~~~~l~  147 (195)
T 2gez_A           69 NAGIGSVLTNSGTVEMEASIMDGNTMKCGAVSGLSTVLNPISLARLVMDKTPHIYLAFQGAQDFAKQQGVETVDSSHLI  147 (195)
T ss_dssp             SSSTTCCCBTTSCCCEEEEEEETTTTEEEEEEEESSBSCHHHHHHHHHHHSSCSEEEHHHHHHHHHHHTCCBCCGGGGC
T ss_pred             CCCCCCCCCCCCCEEEEEEEECCCCCCCCEEEECCCCCCHHHHHHHHHCCCCCEEEECHHHHHHHHHCCCCCCCCCCCC
T ss_conf             8652877788899887546751788664212004765787999999974898504434789999998499636801028


No 21 
>2kg4_A Growth arrest and DNA-damage-inducible protein GADD45 alpha; flexible regions, monomer, cell cycle; NMR {Homo sapiens}
Probab=29.31  E-value=20  Score=16.29  Aligned_cols=25  Identities=24%  Similarity=0.224  Sum_probs=12.4

Q ss_pred             HHHHHCCCCEEEECCHHHHHHHHCC
Q ss_conf             9997089945861468999874036
Q gi|254780359|r   53 FIIRHTCGIVCTPMPFHTAHKLKLN   77 (210)
Q Consensus        53 fm~~~~~Glic~al~~~~~~~L~Lp   77 (210)
                      |-..|.--+|.|.=.+...+-+|+-
T Consensus        81 lC~E~~I~lIkV~~~~kLge~~Gl~  105 (165)
T 2kg4_A           81 FCCENDINILRVSNPGRLAELLLLE  105 (165)
T ss_dssp             HHHHTTCCEEEESCHHHHHHHHHHT
T ss_pred             HHHHCCCCEEEECCHHHHHHHHCCC
T ss_conf             9851598869968899999997656


No 22 
>3jsz_A LGT1, putative uncharacterized protein; glucosyltransferase, legionnaire'S disease; HET: MSE UPG; 1.70A {Legionella pneumophila} PDB: 2wzg_A* 3jt1_A* 2wzf_A*
Probab=29.05  E-value=20  Score=16.27  Aligned_cols=52  Identities=15%  Similarity=0.206  Sum_probs=39.9

Q ss_pred             HHHHHHHHHHCCCCCEEEEEEEECCCC-CCCCHHHHHHHHHHHCCCEEEHHHH
Q ss_conf             267769988769960059888536887-5059899999999838907779999
Q gi|254780359|r  150 TEASVDLCKITGLPPIAVICELVNDDG-TIKKGKQVIEFSKKYDLKIISVQDL  201 (210)
Q Consensus       150 TEaavdL~~lAGl~P~~vi~Eil~~~G-~~~~~~~~~~fA~~~~lp~i~i~dl  201 (210)
                      -|-.+.|-+++...|-+.+|-+-+..- +.-...++.+||++++|.+++++.+
T Consensus       150 ~e~q~~L~e~reqNp~~~i~LVYsStlLn~~a~~ql~~faken~IsllDiDs~  202 (525)
T 3jsz_A          150 SKQQEALKRRREQYPGCKIRLIYSSSLLNPEANRQMKAFAKKQNISLIDIDSV  202 (525)
T ss_dssp             HHHHHHHHHHHHHCTTCEEEEEECSTTSCHHHHHHHHHHHHHTTEEEEEGGGC
T ss_pred             HHHHHHHHHHHHHCCCCEEEEEEEHHHCCHHHHHHHHHHHHHCCCEEEECCCC
T ss_conf             77899999999758998399996113238899999999987569337632113


No 23 
>1k2x_A Putative L-asparaginase; NTN hydrolase, asparginase, autoproteolysis; HET: CME; 1.65A {Escherichia coli} SCOP: d.153.1.5 PDB: 1jn9_A* 1t3m_A 2zal_A
Probab=28.33  E-value=2  Score=22.58  Aligned_cols=65  Identities=15%  Similarity=0.105  Sum_probs=38.9

Q ss_pred             ECCCCCCCCCCHHHHHHHHHHHCCCCCEEEEE------------EEECC-CCCCCCHHHHHHHHHHHCCCEEEHHHHH
Q ss_conf             12698246678026776998876996005988------------85368-8750598999999998389077799999
Q gi|254780359|r  138 SRDGGVLVRPGHTEASVDLCKITGLPPIAVIC------------ELVND-DGTIKKGKQVIEFSKKYDLKIISVQDLI  202 (210)
Q Consensus       138 a~~gGvl~R~GHTEaavdL~~lAGl~P~~vi~------------Eil~~-~G~~~~~~~~~~fA~~~~lp~i~i~dli  202 (210)
                      +--|+++...|..|.--.++.=..+.-.+|.|            .+|+. +..++.++.+++||.++|+++++-+.++
T Consensus        67 aG~Gs~~~~dG~velDA~iMdG~~~~~GaV~~v~~vknPi~~Ar~vm~~~~h~~L~G~gA~~fA~~~G~~~~~~~~~~  144 (177)
T 1k2x_A           67 AGIGAVFTRDETHELDACVMDGNTLKAGAVAGVSHLRNPVLAARLVMEQSPHVMMIGEGAENFAFARGMERVSPEIFS  144 (177)
T ss_dssp             SSTTCCCBTTSCCCEEEEEEETTTCCEEEEEEESSCSCHHHHHHHHHHHSSCSEEEHHHHHHHHHTTTCCCCCGGGGC
T ss_pred             CCCCCCCCCCCCEEEEEEEEECCCCCEEEEEECCCCCCHHHHHHHHHCCCCCEEEECHHHHHHHHHCCCCCCCCCCCC
T ss_conf             873877389999888778881688850268651555678999999971499758765779999998499637844447


No 24 
>1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A*
Probab=28.24  E-value=30  Score=15.12  Aligned_cols=92  Identities=12%  Similarity=0.066  Sum_probs=37.2

Q ss_pred             HHHHHHHCCCCCCCCCCCCC---------C--CEEEEEECCCCCCCC-----CC-HHHHHHHHHHHHHHHCCHHH-HC-C
Q ss_conf             99987403643244566566---------5--217887203477789-----99-88999999999842013243-13-8
Q gi|254780359|r   69 HTAHKLKLNPMVLENESVHK---------T--AFTVSVDSKHGITTG-----IS-ADDRAYTIKNLANPHSIADN-FV-R  129 (210)
Q Consensus        69 ~~~~~L~Lp~m~~~n~~~~~---------t--aFtvsvd~~~g~tTG-----IS-a~DRa~TIr~la~~~~~~~d-f~-~  129 (210)
                      +.|++-+|+.+ .+.....+         +  --+.|..+...++||     ++ +.+-+.-++.+.+-...... .. .
T Consensus       148 ~i~~~~~i~lI-eD~a~a~g~~~~g~~~G~~~~~~fSf~~~K~i~~geGG~i~tnd~~~~~~~~~lr~~G~~~~~~~~~~  226 (393)
T 1mdo_A          148 ALGERYGIPVI-EDAAHATGTSYKGRHIGARGTAIFSFHAIKNITCAEGGIVVTDNPQFADKLRSLKFHGLGVDAWDRQS  226 (393)
T ss_dssp             HHHHHHTCCBC-EECTTCTTCEETTEETTSSSEEEEECCTTSSSCSSSCEEEEESCHHHHHHHHHHTBTTEECC------
T ss_pred             HHHHHCCCEEE-ECCHHHHCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCEEEEECHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf             88874295799-72803326743897358611699978788756677981899966588999999996798865441223


Q ss_pred             CC-CCCEEEECCCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf             98-5001001269824667802677699887699
Q gi|254780359|r  130 PG-HIFPLISRDGGVLVRPGHTEASVDLCKITGL  162 (210)
Q Consensus       130 PG-HV~pL~a~~gGvl~R~GHTEaavdL~~lAGl  162 (210)
                      ++ ....... .-|..-|..--.|++.+.+|..+
T Consensus       227 ~~~~~~~~~~-~~G~N~rmsel~Aaig~~qL~~l  259 (393)
T 1mdo_A          227 GGRAPQAEVL-APGYKYNLPDLNAAIALAQLQKL  259 (393)
T ss_dssp             -----CCEES-SCCCBCCCCHHHHHHHHHHHHTH
T ss_pred             CCCCCCCCCC-CCCCCCCCCHHHHHHHHHHHHHH
T ss_conf             3333211124-57776564057787751001103


No 25 
>2jya_A AGR_C_3324P, uncharacterized protein ATU1810; protein with unknown function ATU1810, ontario centre for structural proteomics; NMR {Agrobacterium tumefaciens str}
Probab=26.82  E-value=33  Score=14.90  Aligned_cols=19  Identities=5%  Similarity=0.209  Sum_probs=13.5

Q ss_pred             CHHHHHHHHHHHCCCEEEH
Q ss_conf             9899999999838907779
Q gi|254780359|r  180 KGKQVIEFSKKYDLKIISV  198 (210)
Q Consensus       180 ~~~~~~~fA~~~~lp~i~i  198 (210)
                      ..++++.||+++|+.+.=+
T Consensus        60 skE~Ai~yA~k~g~~y~V~   78 (106)
T 2jya_A           60 TQEQAEAYAQRKGIEYRVI   78 (106)
T ss_dssp             SHHHHHHHHHHHTCEEEEC
T ss_pred             CHHHHHHHHHHCCCEEEEE
T ss_conf             9999999999869839997


No 26 
>2uvp_A HOBA; hypothetical protein, unknown function, DNAA, SIS fold, DNA replication; 1.7A {Helicobacter pylori} PDB: 2uvp_B 2wp0_A
Probab=26.67  E-value=33  Score=14.88  Aligned_cols=24  Identities=21%  Similarity=0.385  Sum_probs=21.3

Q ss_pred             HHHHHHHHHHCCCEEEEEECCCCC
Q ss_conf             699999999689829999677898
Q gi|254780359|r   11 YIEDVIQSFQKGEMVIVTDADDRE   34 (210)
Q Consensus        11 ~ie~ai~al~~G~~Viv~D~~dRE   34 (210)
                      -+..+|+.+-+|+-|||.-|++||
T Consensus        42 L~a~~l~~lL~G~s~IviTD~~R~   65 (186)
T 2uvp_A           42 LIAQTISHVLNGGSLLVSADSSRH   65 (186)
T ss_dssp             HHHHHHHHHHTTCEEEEEECGGGH
T ss_pred             HHHHHHHHHHCCCEEEEEECCCHH
T ss_conf             999999998579769999787077


No 27 
>1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-amino-7-ketopelargonate synthase, transferase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A*
Probab=24.43  E-value=36  Score=14.62  Aligned_cols=34  Identities=15%  Similarity=0.124  Sum_probs=25.0

Q ss_pred             CCEEEEEEEE-CCCCCCCCHHHHHHHHHHHCCCEE
Q ss_conf             6005988853-688750598999999998389077
Q gi|254780359|r  163 PPIAVICELV-NDDGTIKKGKQVIEFSKKYDLKII  196 (210)
Q Consensus       163 ~P~~vi~Eil-~~~G~~~~~~~~~~fA~~~~lp~i  196 (210)
                      ....|++|=+ +-+|++...+++.+.+++|+..++
T Consensus       168 ~~~~vv~e~v~s~~G~i~~l~~l~~l~~~~~~~li  202 (384)
T 1bs0_A          168 GQQMVVTEGVFSMDGDSAPLAEIQQVTQQHNGWLM  202 (384)
T ss_dssp             SCEEEEEESBCTTTCCBCCHHHHHHHHHHTTCEEE
T ss_pred             CCEEEEECCCCCCCCCCCCHHHHHHHHHHCCCEEE
T ss_conf             86699988898889875579999999997496999


No 28 
>1tif_A IF3-N, translation initiation factor 3; IF3 N-terminal domain, ribosome binding factor; 1.80A {Geobacillus stearothermophilus} SCOP: d.15.8.1
Probab=23.44  E-value=38  Score=14.50  Aligned_cols=29  Identities=24%  Similarity=0.589  Sum_probs=18.9

Q ss_pred             EECCCCC---CCCHHHHHHHHHHHCCCEEEHH
Q ss_conf             5368875---0598999999998389077799
Q gi|254780359|r  171 LVNDDGT---IKKGKQVIEFSKKYDLKIISVQ  199 (210)
Q Consensus       171 il~~~G~---~~~~~~~~~fA~~~~lp~i~i~  199 (210)
                      +++++|+   .++..++...|++.+|-++.++
T Consensus        18 lI~~~G~~lGv~~~~eAl~~A~~~~lDLV~vs   49 (78)
T 1tif_A           18 LIDQNGDQLGIKSKQEALEIAARRNLDLVLVA   49 (78)
T ss_dssp             EECTTSCEEEEEEHHHHHHHHHHTTCEEEEEE
T ss_pred             EECCCCCEECCCCHHHHHHHHHHCCCCEEEEC
T ss_conf             98799968671629999999998699789988


No 29 
>1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin B6, lyase; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A*
Probab=22.90  E-value=39  Score=14.43  Aligned_cols=48  Identities=17%  Similarity=0.178  Sum_probs=37.8

Q ss_pred             CHHHHHHHHHHHCCCCCEEEEEEEEC-CCCCCCCHHHHHHHHHHHCCCE
Q ss_conf             80267769988769960059888536-8875059899999999838907
Q gi|254780359|r  148 GHTEASVDLCKITGLPPIAVICELVN-DDGTIKKGKQVIEFSKKYDLKI  195 (210)
Q Consensus       148 GHTEaavdL~~lAGl~P~~vi~Eil~-~~G~~~~~~~~~~fA~~~~lp~  195 (210)
                      -.-|..++=++-+|+.|.+|++-.=+ ..|..-+.+++.+++++|++.+
T Consensus       220 ~~L~~~i~~~~~~g~~p~~VvataGtT~tGaiDpl~~I~~i~~~~~~wl  268 (486)
T 1js3_A          220 SALQEALERDKAAGLIPFFVVATLGTTSCCSFDNLLEVGPICHEEDIWL  268 (486)
T ss_dssp             HHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHTTCEE
T ss_pred             HHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHCCCEE
T ss_conf             9999999998754998659996158866513146999999997438727


No 30 
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=20.54  E-value=44  Score=14.13  Aligned_cols=69  Identities=14%  Similarity=0.267  Sum_probs=41.8

Q ss_pred             HCCCCCCCEEEECCCCCCCCCCHHHHHH---HHHHHC--CCCCEEEEEEEECCCCCCCCHHHHHHHHHHHCCCEEEH
Q ss_conf             1389850010012698246678026776---998876--99600598885368875059899999999838907779
Q gi|254780359|r  127 FVRPGHIFPLISRDGGVLVRPGHTEASV---DLCKIT--GLPPIAVICELVNDDGTIKKGKQVIEFSKKYDLKIISV  198 (210)
Q Consensus       127 f~~PGHV~pL~a~~gGvl~R~GHTEaav---dL~~lA--Gl~P~~vi~Eil~~~G~~~~~~~~~~fA~~~~lp~i~i  198 (210)
                      +...-+++.+...   +..+.....+--   .+.+..  .-.|+.++.--.|.....-..+++.+||++++++++.+
T Consensus        89 ~~~~~~~~i~v~d---~~~~~~~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~v~~~~~~~~a~~~~~~~~e~  162 (190)
T 3con_A           89 YMRTGEGFLCVFA---INNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPTRTVDTKQAHELAKSYGIPFIET  162 (190)
T ss_dssp             -CTTCSEEEEEEE---TTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHHHHTCCEEEC
T ss_pred             HHHCCCEEEEECC---CCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHCCCCHHHHHHHHHHHCCEEEEE
T ss_conf             8512638999523---6877789999999999998508899639998305204332477999999999809949996


No 31 
>2k89_A PLA2P, PLAP, phospholipase A-2-activating protein; ubiquitin binding, WD repeat, protein binding; NMR {Homo sapiens} PDB: 2k8a_A 2k8b_B 2k8c_B
Probab=20.02  E-value=39  Score=14.46  Aligned_cols=29  Identities=14%  Similarity=0.151  Sum_probs=24.3

Q ss_pred             CHHHHHHHHHHHCCCEEEHHHHHHHHHHC
Q ss_conf             98999999998389077799999999843
Q gi|254780359|r  180 KGKQVIEFSKKYDLKIISVQDLIAWRKKK  208 (210)
Q Consensus       180 ~~~~~~~fA~~~~lp~i~i~dli~yr~~~  208 (210)
                      ...-+.+|..+|+||.--+++|+.|..+|
T Consensus        41 p~~~A~kFl~~n~L~~~yldqI~~FI~~N   69 (80)
T 2k89_A           41 PWLTAYNFLQKNDLNPMFLDQVAKFIIDN   69 (80)
T ss_dssp             HHHHHHHHHHHHTCCTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHHHHHC
T ss_conf             89999999998199999999999999971


Done!