Query         gi|254780359|ref|YP_003064772.1| GTP cyclohydrolase II protein (riboflavin biosynthesis) [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 210
No_of_seqs    114 out of 1786
Neff          5.2 
Searched_HMMs 13730
Date          Wed Jun  1 03:17:39 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780359.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d1g57a_ d.115.1.2 (A:) 3,4-dih 100.0       0       0  538.0  21.0  207    3-209     3-209 (209)
  2 d1tksa_ d.115.1.2 (A:) 3,4-dih 100.0       0       0  528.4  19.8  199    9-207     3-202 (202)
  3 d1k4ia_ d.115.1.2 (A:) 3,4-dih 100.0       0       0  525.5  18.8  201    9-209     1-213 (216)
  4 d1snna_ d.115.1.2 (A:) 3,4-dih 100.0       0       0  511.4  21.5  194   10-204     1-218 (219)
  5 d1lh0a_ c.61.1.1 (A:) Orotate   77.8     2.3 0.00017   20.6   7.6   76  129-208   116-194 (213)
  6 d1y0na_ d.291.1.1 (A:) Hypothe  72.8     3.1 0.00023   19.8   5.1   39    5-47     34-72  (78)
  7 d1ko7a1 c.98.2.1 (A:1-129) HPr  70.8     1.9 0.00014   21.1   3.5   70  125-199    42-111 (129)
  8 d1zyma2 c.8.1.2 (A:3-21,A:145-  39.3       6 0.00043   18.0   1.6   80   21-101    11-101 (124)
  9 d1hrua_ d.115.1.1 (A:) Hypothe  36.9      13 0.00094   15.9   4.2   63    7-75      3-70  (186)
 10 d1tifa_ d.15.8.1 (A:) Translat  36.1      10 0.00076   16.5   2.4   29  171-199    16-47  (76)
 11 d1vbga2 c.8.1.1 (A:383-517) Py  36.1      10 0.00076   16.5   2.4   60   40-100    46-124 (135)
 12 d1o57a2 c.61.1.1 (A:75-276) Pu  34.5      14   0.001   15.7   5.0   91   65-171    69-159 (202)
 13 d1j20a1 c.26.2.1 (A:1-165) Arg  33.6      10 0.00074   16.6   2.0   16  180-195   149-164 (165)
 14 d1vl2a1 c.26.2.1 (A:2-169) Arg  33.0       7 0.00051   17.6   1.1   16  180-195   153-168 (168)
 15 d1z7da1 c.67.1.4 (A:7-410) Orn  26.4      19  0.0014   14.9   4.1   37  161-197   184-225 (404)
 16 d1f0ya2 c.2.1.6 (A:12-203) Sho  24.2      21  0.0016   14.6   3.8   54  114-167   130-188 (192)
 17 d1im4a_ e.8.1.7 (A:) DinB homo  23.3      22  0.0016   14.5   2.5   63    9-74     16-88  (209)
 18 d1wdka3 c.2.1.6 (A:311-496) Fa  22.6      23  0.0017   14.4   3.4   54  114-167   124-182 (186)
 19 d1k92a1 c.26.2.1 (A:1-188) Arg  22.0      22  0.0016   14.5   2.0   17  179-195   166-182 (188)
 20 d1lj8a4 c.2.1.6 (A:1-286) Mann  20.6      25  0.0018   14.1   3.0   46  156-208   175-221 (286)
 21 d1knxa1 c.98.2.1 (A:1-132) HPr  20.5      22  0.0016   14.5   1.8   64  129-197    49-112 (132)

No 1  
>d1g57a_ d.115.1.2 (A:) 3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB {Escherichia coli [TaxId: 562]}
Probab=100.00  E-value=0  Score=538.01  Aligned_cols=207  Identities=39%  Similarity=0.686  Sum_probs=202.5

Q ss_pred             CCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEEHHHCCHHHHHHHHHHCCCCEEEECCHHHHHHHHCCCCCCC
Q ss_conf             77577956699999999689829999677898870133484459999999999708994586146899987403643244
Q gi|254780359|r    3 QKKSLDERYIEDVIQSFQKGEMVIVTDADDRENEADLVLAAIHCTSEKMAFIIRHTCGIVCTPMPFHTAHKLKLNPMVLE   82 (210)
Q Consensus         3 ~~~~~~~~~ie~ai~al~~G~~Viv~D~~dREnEgDlv~~Ae~vt~e~i~fm~~~~~Glic~al~~~~~~~L~Lp~m~~~   82 (210)
                      ......|++|++||++||+|+||||+||++||||||||++|+++||++|+||++|++|+||+|+++++|++|+||+|+..
T Consensus         3 ~~~~~~~~~ie~ai~alk~G~~Viv~Dd~~RE~EgDlv~~Ae~~t~e~i~fm~~~~~GliC~a~~~~~~~~L~Lp~m~~~   82 (209)
T d1g57a_           3 SSFGTPFERVENALAALREGRGVMVLDDEDRENEGDMIFPAETMTVEQMALTIRHGSGIVCLCITEDRRKQLDLPMMVEN   82 (209)
T ss_dssp             GGGCCHHHHHHHHHHHHHTTCCEEEEC----CCCEEEEEETTTCCHHHHHHHHHHBCSCCEEEECHHHHHHTTCCBSCSS
T ss_pred             CCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEEHHHCCHHHHHHHHHHCCCCEEECCCHHHHHCCCCCCCCCC
T ss_conf             32178520499999999879979999789988742689897989999999999838998787356999850799986665


Q ss_pred             CCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf             56656652178872034777899988999999999842013243138985001001269824667802677699887699
Q gi|254780359|r   83 NESVHKTAFTVSVDSKHGITTGISADDRAYTIKNLANPHSIADNFVRPGHIFPLISRDGGVLVRPGHTEASVDLCKITGL  162 (210)
Q Consensus        83 n~~~~~taFtvsvd~~~g~tTGISa~DRa~TIr~la~~~~~~~df~~PGHV~pL~a~~gGvl~R~GHTEaavdL~~lAGl  162 (210)
                      |.+.++++|++|||+++|++|||||.|||+|||.|++++++|+||++|||||||++++|||++|+|||||+||||+|||+
T Consensus        83 ~~~~~~~~ftvsvd~~~g~tTGISa~dRa~Tir~l~~~~~~~~df~~PGHv~pL~a~~gGv~~R~GHTEaavdL~~lAGl  162 (209)
T d1g57a_          83 NTSAYGTGFTVTIEAAEGVTTGVSAADRITTVRAAIADGAKPSDLNRPGHVFPLRAQAGGVLTRGGHTEATIDLMTLAGF  162 (209)
T ss_dssp             CCCTTCCCBBSCEEESSSCSSSCSHHHHHHHHHHHHSTTCCGGGEEEEEEEEEEECCTTGGGTCCSHHHHHHHHHHHTTS
T ss_pred             CCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCHHHHCCCCEECEEEECCCCCCCCCHHHHHHHHHHHHCCC
T ss_conf             54446876158998068854662699999999875233799889527730022654168845663088999999986599


Q ss_pred             CCEEEEEEEECCCCCCCCHHHHHHHHHHHCCCEEEHHHHHHHHHHCC
Q ss_conf             60059888536887505989999999983890777999999998437
Q gi|254780359|r  163 PPIAVICELVNDDGTIKKGKQVIEFSKKYDLKIISVQDLIAWRKKKE  209 (210)
Q Consensus       163 ~P~~vi~Eil~~~G~~~~~~~~~~fA~~~~lp~i~i~dli~yr~~~e  209 (210)
                      +|++||||||+++|+||+.+++++||++|+||+++|+|||+||+++|
T Consensus       163 ~P~avi~Eil~~dG~~~~~~~~~~fA~~~~l~~isi~dli~yr~~~e  209 (209)
T d1g57a_         163 KPAGVLCELTNDDGTMARAPECIEFANKHNMALVTIEDLVAYRQAHE  209 (209)
T ss_dssp             CSCEEEEEBBCTTSSBCCHHHHHHHHHHTTCEEEEHHHHHHHHHHHC
T ss_pred             CCEEEEEEEECCCCCCCCHHHHHHHHHHCCCCEEEHHHHHHHHHHCC
T ss_conf             97078999855998646889999999984997998999999998549


No 2  
>d1tksa_ d.115.1.2 (A:) 3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB {Candida albicans [TaxId: 5476]}
Probab=100.00  E-value=0  Score=528.43  Aligned_cols=199  Identities=45%  Similarity=0.755  Sum_probs=196.1

Q ss_pred             HHHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEEHHHCCHHHHHHHHHHCCCCEEEECCHHHHHHHHCCCCCCCCCCCCC
Q ss_conf             56699999999689829999677898870133484459999999999708994586146899987403643244566566
Q gi|254780359|r    9 ERYIEDVIQSFQKGEMVIVTDADDRENEADLVLAAIHCTSEKMAFIIRHTCGIVCTPMPFHTAHKLKLNPMVLENESVHK   88 (210)
Q Consensus         9 ~~~ie~ai~al~~G~~Viv~D~~dREnEgDlv~~Ae~vt~e~i~fm~~~~~Glic~al~~~~~~~L~Lp~m~~~n~~~~~   88 (210)
                      |++||+||++||+|+||||+||++||||||||++||++||++|+||++|++|+||+|+++++|++|+||+|+..|.+.++
T Consensus         3 ~~~ie~ai~~l~~G~~Viv~Dd~~RE~EgDlv~~Ae~~T~~~i~fm~~~~~Glic~a~~~~~~~~L~L~~m~~~~~~~~~   82 (202)
T d1tksa_           3 FTPIEEALEAYKNGEFLIVMDDEDRENEGDLIMAAELITQEKMAFLVRYSSGYVCVPLSEERANQLELPPMLANRSDRHG   82 (202)
T ss_dssp             SCCHHHHHHHHHTTCCEEEESSSCTTCBCEEEEEGGGCCHHHHHHHHHTBCSCCEEEEEHHHHHHTTCCBSCC------C
T ss_pred             CCCHHHHHHHHHCCCEEEEEECCCCCCCCCEEEEHHHCCHHHHHHHHHHCCCCEEEECCHHHHHHHCCCCCCCCCCCCCC
T ss_conf             66599999999889979999689988640689797989999999999847887588347899744235654333567777


Q ss_pred             CCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEE
Q ss_conf             52178872034777899988999999999842013243138985001001269824667802677699887699600598
Q gi|254780359|r   89 TAFTVSVDSKHGITTGISADDRAYTIKNLANPHSIADNFVRPGHIFPLISRDGGVLVRPGHTEASVDLCKITGLPPIAVI  168 (210)
Q Consensus        89 taFtvsvd~~~g~tTGISa~DRa~TIr~la~~~~~~~df~~PGHV~pL~a~~gGvl~R~GHTEaavdL~~lAGl~P~~vi  168 (210)
                      ++|++|||+++|++|||||.|||+|||+|++++++|+||++|||||||++++|||++|+|||||+||||+||||+|++||
T Consensus        83 t~f~vsvd~~~g~~TGISa~DRa~Tir~la~~~~~~~df~~PGHv~pl~a~~ggvl~R~GHTEasvdL~~lAGl~P~avi  162 (202)
T d1tksa_          83 TAYTITCDFAEGTTTGISAHDRALTTRSLANPNSKPQDFIKPGHILPLRAVPGLLKKRRGHTEAAVQLSTLAGLQPAGVI  162 (202)
T ss_dssp             CCBBCCEEESTTCSSSCSHHHHHHHHHHHHCTTCCGGGEEEEEEEEEEEECTTGGGTCCCHHHHHHHHHHHTTSCSBEEE
T ss_pred             CCCCCCHHHCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCEEE
T ss_conf             65034442136875565589999999997088998788504434110365047725676389999999983699861899


Q ss_pred             EEEEC-CCCCCCCHHHHHHHHHHHCCCEEEHHHHHHHHHH
Q ss_conf             88536-8875059899999999838907779999999984
Q gi|254780359|r  169 CELVN-DDGTIKKGKQVIEFSKKYDLKIISVQDLIAWRKK  207 (210)
Q Consensus       169 ~Eil~-~~G~~~~~~~~~~fA~~~~lp~i~i~dli~yr~~  207 (210)
                      ||||+ ++|+|++.+++++||++|+||+++|+|||+||+|
T Consensus       163 ~Eil~d~dG~~~~~~~~~~fA~~~~l~~isi~dli~yr~k  202 (202)
T d1tksa_         163 CELVRDEDGLMMRLDDCIQFGKKHGIKIININQLVEYISK  202 (202)
T ss_dssp             EEBBCTTTCCBCBHHHHHHHHHHHTCCEEEHHHHHHHHCC
T ss_pred             EEEEECCCCCCCCHHHHHHHHHHCCCCEEEHHHHHHHHHC
T ss_conf             9998879987348999999999859979989999999849


No 3  
>d1k4ia_ d.115.1.2 (A:) 3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB {Magnaporthe grisea [TaxId: 148305]}
Probab=100.00  E-value=0  Score=525.53  Aligned_cols=201  Identities=46%  Similarity=0.785  Sum_probs=195.1

Q ss_pred             HHHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEEHHHCCHHHHHHHHHHCCCCEEEECCHHHHHHHHCCCCCCCCCCCCC
Q ss_conf             56699999999689829999677898870133484459999999999708994586146899987403643244566566
Q gi|254780359|r    9 ERYIEDVIQSFQKGEMVIVTDADDRENEADLVLAAIHCTSEKMAFIIRHTCGIVCTPMPFHTAHKLKLNPMVLENESVHK   88 (210)
Q Consensus         9 ~~~ie~ai~al~~G~~Viv~D~~dREnEgDlv~~Ae~vt~e~i~fm~~~~~Glic~al~~~~~~~L~Lp~m~~~n~~~~~   88 (210)
                      |++||+||++||+|+||||+||+|||||||||++||++||++|+||++|++|+||+|+++++|++|+||+|+..|.+.++
T Consensus         1 f~~ie~ai~~l~~G~~viv~Dd~~REnEgDlv~~Ae~~t~e~i~fm~~~~~Glic~a~~~~~~~~L~Lp~m~~~~~~~~~   80 (216)
T d1k4ia_           1 FDAIPDVIQAFKNGEFVVVLDDPSRENEADLIIAAESVTTEQMAFMVRHSSGLICAPLTPERTTALDLPQMVTHNADPRG   80 (216)
T ss_dssp             CCCHHHHHHHHHTTCCEEEECCTTTTCCEEEEEEGGGCCHHHHHHHHHHBCSCCEEEECHHHHHHTTCCBSCSSCCCSSC
T ss_pred             CCCHHHHHHHHHCCCEEEEEECCCCCCCCCEEEEHHHCCHHHHHHHHHHCCCCEEEEEHHHHHHHCCCCCCCCCCCCCCC
T ss_conf             97689999999889969999679988740589786869999999999847998898541765300265543445433333


Q ss_pred             CCEEEEEECCC-CCCCCCCHHHHHHHHHHHHHHHCCHHHHCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEE
Q ss_conf             52178872034-77789998899999999984201324313898500100126982466780267769988769960059
Q gi|254780359|r   89 TAFTVSVDSKH-GITTGISADDRAYTIKNLANPHSIADNFVRPGHIFPLISRDGGVLVRPGHTEASVDLCKITGLPPIAV  167 (210)
Q Consensus        89 taFtvsvd~~~-g~tTGISa~DRa~TIr~la~~~~~~~df~~PGHV~pL~a~~gGvl~R~GHTEaavdL~~lAGl~P~~v  167 (210)
                      ++|+++|+.++ +++|||||.|||+|||+|++++++|+||++|||||||++++|||++|+|||||+||||+|||++|++|
T Consensus        81 ~~~~~sv~~~~~~~~TGISa~DRa~Tir~la~~~~~~~df~~PGHv~pL~a~~gGvl~R~GHTEaavdL~~lAGl~P~av  160 (216)
T d1k4ia_          81 TAYTVSVDAEHPSTTTGISAHDRALACRMLAAPDAQPSHFRRPGHVFPLRAVAGGVRARRGHTEAGVELCRLAGKRPVAV  160 (216)
T ss_dssp             CCBBCCEEECSTTCSSSCSHHHHHHHHHHHHCTTCCGGGEEEEEEEEEEECCTTHHHHCCSHHHHHHHHHHHTTCCSBEE
T ss_pred             CCCCCEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEECCCEEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCEE
T ss_conf             54321145405666655217999999999856788821243142030256405880677870799999999819997579


Q ss_pred             EEEEECCCC-----------CCCCHHHHHHHHHHHCCCEEEHHHHHHHHHHCC
Q ss_conf             888536887-----------505989999999983890777999999998437
Q gi|254780359|r  168 ICELVNDDG-----------TIKKGKQVIEFSKKYDLKIISVQDLIAWRKKKE  209 (210)
Q Consensus       168 i~Eil~~~G-----------~~~~~~~~~~fA~~~~lp~i~i~dli~yr~~~e  209 (210)
                      ||||||++|           .||+++++++||++|+||+++|+|||+||+++|
T Consensus       161 i~Eildd~g~~~~~~~~~~g~ma~~~~l~~fA~~h~l~~i~i~dli~yr~~~E  213 (216)
T d1k4ia_         161 ISEIVDDGQEVEGRAVRAAPGMLRGDECVAFARRWGLKVCTIEDMIAHVEKTE  213 (216)
T ss_dssp             EEEBEECCEECTTSSCEESCEECCHHHHHHHHHHTTCEEEEHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEHHHHHHHHHHHC
T ss_conf             99995189854542233541113519999999982996988999999998631


No 4  
>d1snna_ d.115.1.2 (A:) 3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB {Archaeon Methanocaldococcus jannaschii [TaxId: 2190]}
Probab=100.00  E-value=0  Score=511.39  Aligned_cols=194  Identities=32%  Similarity=0.570  Sum_probs=184.7

Q ss_pred             HHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEEHHHCCHHHHHHHHHHCCCCEEEECCHHHHHHHHCCCCCCCC------
Q ss_conf             66999999996898299996778988701334844599999999997089945861468999874036432445------
Q gi|254780359|r   10 RYIEDVIQSFQKGEMVIVTDADDRENEADLVLAAIHCTSEKMAFIIRHTCGIVCTPMPFHTAHKLKLNPMVLEN------   83 (210)
Q Consensus        10 ~~ie~ai~al~~G~~Viv~D~~dREnEgDlv~~Ae~vt~e~i~fm~~~~~Glic~al~~~~~~~L~Lp~m~~~n------   83 (210)
                      ++|++||++||+|+||||+||++||||||||++|+++||++|+||++|++|+||+|+++++|++|+||+|+..+      
T Consensus         1 d~ie~ai~~lk~G~~Viv~Dd~~REnEgDlv~~Ae~~t~e~i~fm~~~~~Glic~a~~~~~~~~L~Lp~m~~~~~~~~~~   80 (219)
T d1snna_           1 NNVEKAIEALKKGEIILVYDSDEREGETDMVVASQFITPEHIRIMRKDAGGLICTALHPDICNKLGIPFMVDILEFASQK   80 (219)
T ss_dssp             CHHHHHHHHHHTTCCEEEECCTTTTCCEEEEEEGGGCCHHHHHHHHHHTEEEEEEEECHHHHHHHTCCCHHHHHHHHTTT
T ss_pred             CCHHHHHHHHHCCCEEEEEECCCCCCCCCEEEEHHHCCHHHHHHHHHCCCCCEEECCCHHHHHHCCCCCCCCHHHHHHHC
T ss_conf             97899999998799799996899877514898956599999999997289977846889999876994001201211011


Q ss_pred             ------------CCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHH------HHCCHHHHCCCCCCCEEEECCCCCCC
Q ss_conf             ------------665665217887203477789998899999999984------20132431389850010012698246
Q gi|254780359|r   84 ------------ESVHKTAFTVSVDSKHGITTGISADDRAYTIKNLAN------PHSIADNFVRPGHIFPLISRDGGVLV  145 (210)
Q Consensus        84 ------------~~~~~taFtvsvd~~~g~tTGISa~DRa~TIr~la~------~~~~~~df~~PGHV~pL~a~~gGvl~  145 (210)
                                  ...++|+|||||||+++ +|||||.|||+|||.|++      ++++++||++|||||||++++|||++
T Consensus        81 ~~~~~~~~~~~~~~~~~t~ftvsvd~~~~-~TGISa~DRa~Tir~La~~~~~~~~~~~~~dF~~PGHV~pL~a~~GGvl~  159 (219)
T d1snna_          81 FKVLRELYPNDIPYDEKSSFSITINHRKT-FTGITDNDRAFTIKKLAELVKEGRFNDFGKEFRSPGSVTLLRAAEGLVKN  159 (219)
T ss_dssp             CHHHHHTCCTTCTTSSSCCEEEEEEETTC-SSSCSHHHHHHHHHHHHHHHHTTCGGGHHHHEEEEEEEEEEECCTTGGGT
T ss_pred             CCCCCCCCCCCCCCCCCCCEEEEEECCCC-CCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHCCCCCEEEEEEECCCCCC
T ss_conf             44211233456765677534998614677-78986777999999997203324754334550588601013550476457


Q ss_pred             CCCHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHCCCEEEHHHHHHH
Q ss_conf             67802677699887699600598885368875059899999999838907779999999
Q gi|254780359|r  146 RPGHTEASVDLCKITGLPPIAVICELVNDDGTIKKGKQVIEFSKKYDLKIISVQDLIAW  204 (210)
Q Consensus       146 R~GHTEaavdL~~lAGl~P~~vi~Eil~~~G~~~~~~~~~~fA~~~~lp~i~i~dli~y  204 (210)
                      |+|||||+||||+|||++|++||||||+++|+||+.+++++||++|+||+++|+|||+|
T Consensus       160 R~GHTEaavdL~~lAGl~P~aVicEil~ddG~~~~~~~~~~fA~~~~l~~isi~dli~y  218 (219)
T d1snna_         160 RQGHTEMTVALAELANLVPITTICEMMGDDGNAMSKNETKRYAEKHNLIYLSGEEIINY  218 (219)
T ss_dssp             CCSHHHHHHHHHHHTTSCSEEEEEEEBCTTSSBCCHHHHHHHHHHHTCCEEEHHHHHHH
T ss_pred             CCCHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHCCCCEEEHHHHHHH
T ss_conf             78658999999997399864999999669987558899999999849979989998835


No 5  
>d1lh0a_ c.61.1.1 (A:) Orotate PRTase {Salmonella typhimurium [TaxId: 90371]}
Probab=77.81  E-value=2.3  Score=20.63  Aligned_cols=76  Identities=22%  Similarity=0.373  Sum_probs=56.6

Q ss_pred             CCCCCCEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHCCCEEE---HHHHHHHH
Q ss_conf             898500100126982466780267769988769960059888536887505989999999983890777---99999999
Q gi|254780359|r  129 RPGHIFPLISRDGGVLVRPGHTEASVDLCKITGLPPIAVICELVNDDGTIKKGKQVIEFSKKYDLKIIS---VQDLIAWR  205 (210)
Q Consensus       129 ~PGHV~pL~a~~gGvl~R~GHTEaavdL~~lAGl~P~~vi~Eil~~~G~~~~~~~~~~fA~~~~lp~i~---i~dli~yr  205 (210)
                      .+|+|  |+-.+  |...-|-.--+++..+-+|..+++|+|=+=-++|.-.......++.+++|+|+++   ++||++|.
T Consensus       116 ~~~~V--liVeD--ViTTGgS~~eaie~l~~~G~~V~~v~vivDR~e~~~~~~~~~~~~~~~~gi~~~sl~~~~dl~~~l  191 (213)
T d1lh0a_         116 LQGRV--MLVDD--VITAGTAIRESMEIIQAHGATLAGVLISLDRQERGRGEISAIQEVERDYGCKVISIITLKDLIAYL  191 (213)
T ss_dssp             CCSEE--EEECS--CCSSSCHHHHHHHHHHHTTCEEEEEEEEEECCBBCSSSSBHHHHHHHHHCCEEEEEEEHHHHHHHH
T ss_pred             CCCCE--EEECC--CHHHCCCHHHHHHHHHHHCCCCEEEEEEEEECCCCCCHHHHHHHHHHHCCCEEEEECCHHHHHHHH
T ss_conf             77758--99704--210040579999999974033405999985044553036779999997598089981099999999


Q ss_pred             HHC
Q ss_conf             843
Q gi|254780359|r  206 KKK  208 (210)
Q Consensus       206 ~~~  208 (210)
                      ..+
T Consensus       192 ~~~  194 (213)
T d1lh0a_         192 EEK  194 (213)
T ss_dssp             HHC
T ss_pred             HHC
T ss_conf             876


No 6  
>d1y0na_ d.291.1.1 (A:) Hypothetical UPF0270 protein PA3463 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=72.83  E-value=3.1  Score=19.82  Aligned_cols=39  Identities=18%  Similarity=0.334  Sum_probs=28.4

Q ss_pred             CCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEEHHHCC
Q ss_conf             5779566999999996898299996778988701334844599
Q gi|254780359|r    5 KSLDERYIEDVIQSFQKGEMVIVTDADDRENEADLVLAAIHCT   47 (210)
Q Consensus         5 ~~~~~~~ie~ai~al~~G~~Viv~D~~dREnEgDlv~~Ae~vt   47 (210)
                      .++ ...|+++..+|++|+.+|+||.+.   |.-=+++.+-+.
T Consensus        34 ~sl-~~kv~qv~~qL~~G~~vI~fde~~---Es~~I~~k~~l~   72 (78)
T d1y0na_          34 TPL-DVRVERARHALRRGEAVILFDPES---QQCQLMLRSEVP   72 (78)
T ss_dssp             CCH-HHHHHHHHHHHHTTSEEEEECTTT---CCEEEEEGGGSC
T ss_pred             CCH-HHHHHHHHHHHHCCCEEEEECCCC---CEEEEEEHHHHH
T ss_conf             259-999999999998699899987988---747406499968


No 7  
>d1ko7a1 c.98.2.1 (A:1-129) HPr kinase/phoshatase HprK N-terminal domain {Staphylococcus xylosus [TaxId: 1288]}
Probab=70.79  E-value=1.9  Score=21.14  Aligned_cols=70  Identities=14%  Similarity=0.096  Sum_probs=45.5

Q ss_pred             HHHCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHCCCEEEHH
Q ss_conf             431389850010012698246678026776998876996005988853688750598999999998389077799
Q gi|254780359|r  125 DNFVRPGHIFPLISRDGGVLVRPGHTEASVDLCKITGLPPIAVICELVNDDGTIKKGKQVIEFSKKYDLKIISVQ  199 (210)
Q Consensus       125 ~df~~PGHV~pL~a~~gGvl~R~GHTEaavdL~~lAGl~P~~vi~Eil~~~G~~~~~~~~~~fA~~~~lp~i~i~  199 (210)
                      -++.+||-+..+-.++-+.+.+--..+..--+.++....++|++.-    .| ...-+++.++|+++++|++...
T Consensus        42 ~~~~~~~~l~i~G~~e~~yl~~~~~~~~~~~i~~l~~~~~~~lIit----~g-~~~p~~li~~a~~~~iPll~t~  111 (129)
T d1ko7a1          42 FSHYASDRIQLLGTTELSFYNLLPDEERKGRMRKLCRPETPAIIVT----RD-LEPPEELIEAAKEHETPLITSK  111 (129)
T ss_dssp             CTTCCTTSEEEECHHHHHHHHHSCHHHHTTHHHHHCCTTCCCEEEC----TT-CCCCHHHHHHHHHTTCCEEECC
T ss_pred             HHHCCCCEEEEEECHHHHHHHHCCCHHHHHHHHHHHCCCCCEEEEE----CC-CCCCHHHHHHHHHHCCEEEEEC
T ss_conf             9714798599980477888862580789999999817898689997----99-9998999999998098499957


No 8  
>d1zyma2 c.8.1.2 (A:3-21,A:145-249) N-terminal domain of enzyme I of the PEP:sugar phosphotransferase system {Escherichia coli [TaxId: 562]}
Probab=39.34  E-value=6  Score=18.05  Aligned_cols=80  Identities=16%  Similarity=0.202  Sum_probs=48.4

Q ss_pred             CCCEEEEEECC-CC--CCCCCEEEEHHHCCHHHHHHH-HHHCCCCEEE-----ECCHHHHHHHHCCCCCCCCCC--CCCC
Q ss_conf             89829999677-89--887013348445999999999-9708994586-----146899987403643244566--5665
Q gi|254780359|r   21 KGEMVIVTDAD-DR--ENEADLVLAAIHCTSEKMAFI-IRHTCGIVCT-----PMPFHTAHKLKLNPMVLENES--VHKT   89 (210)
Q Consensus        21 ~G~~Viv~D~~-dR--EnEgDlv~~Ae~vt~e~i~fm-~~~~~Glic~-----al~~~~~~~L~Lp~m~~~n~~--~~~t   89 (210)
                      .|+.+++-+.. +.  -.++ -|+-++.++|..+..| .....|+|+-     .=..-.++.|+||.++.-...  .-..
T Consensus        11 ~G~v~~~~~~~~~~~~~~~~-~ILV~~~l~P~~~~~l~~~~v~Giit~~Gg~tSH~AIlAR~lgIP~vvg~~~~~~~i~~   89 (124)
T d1zyma2          11 FGKALLLKEKIIDLSAIQDE-VILVAADLTPSETAQLNLKKVLGFITDAGGRTSHTSIMARSLELPAIVGTGSVTSQVKN   89 (124)
T ss_dssp             EEEEEECCCCCCCGGGCCSC-EEEECSCCCHHHHHHSCGGGEEEEECSCCCSSSHHHHHHHHHTCCEECCCSCHHHHCCT
T ss_pred             EEEEEEECCCHHHHHHCCCC-EEEEECCCCHHHHHHHCHHHEEEEEEECCCCCCHHHHHHHHCCCCEEEECCCHHHHHCC
T ss_conf             99999978858889858998-79997468778874317224279998369866478999997499879970217887117


Q ss_pred             CEEEEEECCCCC
Q ss_conf             217887203477
Q gi|254780359|r   90 AFTVSVDSKHGI  101 (210)
Q Consensus        90 aFtvsvd~~~g~  101 (210)
                      .-.+.||...|.
T Consensus        90 g~~v~vDg~~G~  101 (124)
T d1zyma2          90 DDYLILDAVNNQ  101 (124)
T ss_dssp             TCEEEECCSSCC
T ss_pred             CCEEEEECCCCE
T ss_conf             988999899898


No 9  
>d1hrua_ d.115.1.1 (A:) Hypothetical protein YrdC {Escherichia coli [TaxId: 562]}
Probab=36.91  E-value=13  Score=15.95  Aligned_cols=63  Identities=8%  Similarity=0.115  Sum_probs=37.5

Q ss_pred             CCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEEHHHCCHHHHHHHHHH-----CCCCEEEECCHHHHHHHH
Q ss_conf             795669999999968982999967789887013348445999999999970-----899458614689998740
Q gi|254780359|r    7 LDERYIEDVIQSFQKGEMVIVTDADDRENEADLVLAAIHCTSEKMAFIIRH-----TCGIVCTPMPFHTAHKLK   75 (210)
Q Consensus         7 ~~~~~ie~ai~al~~G~~Viv~D~~dREnEgDlv~~Ae~vt~e~i~fm~~~-----~~Glic~al~~~~~~~L~   75 (210)
                      ++.+.|++|++.|++|+.|++=-|      +-..+.+..-+++.+..+.+-     ...+..++-+.+...++-
T Consensus         3 ~~~d~i~~a~~~L~~G~iv~~PTd------t~Ygl~~~~~~~~av~~i~~~K~R~~~kp~~vlv~~~~~~~~~~   70 (186)
T d1hrua_           3 LQRDAIAAAIDVLNEERVIAYPTE------AVFGVGCDPDSETAVMRLLELKQRPVDKGLILIAANYEQLKPYI   70 (186)
T ss_dssp             HHHHHHHHHHHHHHTTCCEEEECS------SSEEEEECTTCHHHHHHHHHHHTCCGGGCCEEEESSHHHHGGGC
T ss_pred             CCHHHHHHHHHHHHCCCEEEEECC------CEEEEEEECCCHHHHHHHHHHHHHCCCCCCCEEEEHHHHHHHHC
T ss_conf             787999999999976998999878------63178895899689999998630011332002320566533330


No 10 
>d1tifa_ d.15.8.1 (A:) Translation initiation factor IF3, N-terminal domain {Bacillus stearothermophilus [TaxId: 1422]}
Probab=36.09  E-value=10  Score=16.52  Aligned_cols=29  Identities=24%  Similarity=0.589  Sum_probs=21.4

Q ss_pred             EECCCCC---CCCHHHHHHHHHHHCCCEEEHH
Q ss_conf             5368875---0598999999998389077799
Q gi|254780359|r  171 LVNDDGT---IKKGKQVIEFSKKYDLKIISVQ  199 (210)
Q Consensus       171 il~~~G~---~~~~~~~~~fA~~~~lp~i~i~  199 (210)
                      +++++|+   .++..++...|++.||-++.++
T Consensus        16 lI~~~G~~lGv~~~~eAl~~A~~~glDLV~vs   47 (76)
T d1tifa_          16 LIDQNGDQLGIKSKQEALEIAARRNLDLVLVA   47 (76)
T ss_dssp             EECTTSCEEEEEEHHHHHHHHHHTTCEEEEEE
T ss_pred             EECCCCCEECEECHHHHHHHHHHCCCCEEEEC
T ss_conf             98799969670429999999998199879845


No 11 
>d1vbga2 c.8.1.1 (A:383-517) Pyruvate phosphate dikinase, central domain {Maize (Zea mays) [TaxId: 4577]}
Probab=36.08  E-value=10  Score=16.54  Aligned_cols=60  Identities=13%  Similarity=0.080  Sum_probs=35.6

Q ss_pred             EEEHHHCCHHHHHHHHHHCCCCEEE-----ECCHHHHHHHHCCCCCCCCC--------------CCCCCCEEEEEECCCC
Q ss_conf             3484459999999999708994586-----14689998740364324456--------------6566521788720347
Q gi|254780359|r   40 VLAAIHCTSEKMAFIIRHTCGIVCT-----PMPFHTAHKLKLNPMVLENE--------------SVHKTAFTVSVDSKHG  100 (210)
Q Consensus        40 v~~Ae~vt~e~i~fm~~~~~Glic~-----al~~~~~~~L~Lp~m~~~n~--------------~~~~taFtvsvd~~~g  100 (210)
                      |+-+...+|+.+..|.+ ++|+|.-     .=..-.+++|++|-.+.-..              ..-...-.|+||...|
T Consensus        46 ILV~~~t~p~~~~~m~~-a~gIVte~GG~tSHaAivARelgiP~VvG~~~~~~~~~~~~~~~~~~~l~~G~~VtvDg~~G  124 (135)
T d1vbga2          46 ILVRAETSPEDVGGMHA-AVGILTERGGMTSHAAVVARGWGKCCVSGCSGIRVNDAEKLVTIGGHVLREGEWLSLNGSTG  124 (135)
T ss_dssp             EEEESCCCTTSHHHHHH-SSEEEESSCCTTSHHHHHHHHTTCCEEECCTTEEEEGGGTEEEETTEEEETTCEEEEETTTT
T ss_pred             EEEECCCCHHHHHHHHH-EEEEEEECCCCCCHHHHHHHHCCCCEEECCCCCCCCHHCCEEEECCEEECCCCEEEEECCCC
T ss_conf             89984489788411241-16899834874420877777649856853542011001034675564983998999979986


No 12 
>d1o57a2 c.61.1.1 (A:75-276) Pur operon repressor (PurR), C-terminal domain {Bacillus subtilis [TaxId: 1423]}
Probab=34.55  E-value=14  Score=15.71  Aligned_cols=91  Identities=15%  Similarity=0.236  Sum_probs=55.3

Q ss_pred             ECCHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHCCCCCCCEEEECCCCCC
Q ss_conf             14689998740364324456656652178872034777899988999999999842013243138985001001269824
Q gi|254780359|r   65 PMPFHTAHKLKLNPMVLENESVHKTAFTVSVDSKHGITTGISADDRAYTIKNLANPHSIADNFVRPGHIFPLISRDGGVL  144 (210)
Q Consensus        65 al~~~~~~~L~Lp~m~~~n~~~~~taFtvsvd~~~g~tTGISa~DRa~TIr~la~~~~~~~df~~PGHV~pL~a~~gGvl  144 (210)
                      ++....+.+|+.|+...+.........+++.+..++.+.++             +.-..+.++..+|-=..++-.   ++
T Consensus        69 ~lA~~lA~~L~~p~v~~Rk~~k~~~~~~~~~~~~~~~~~~~-------------~~l~i~~~~l~~g~rVlIVDD---vi  132 (202)
T d1o57a2          69 PLAYAAASYLNVPVVIVRKDNKVTEGSTVSINYVSGSSNRI-------------QTMSLAKRSMKTGSNVLIIDD---FM  132 (202)
T ss_dssp             HHHHHHHHHHTCCEEEEBCC-----CCEEEEEEECSSCCSE-------------EEEEEEGGGSCTTCEEEEEEE---EE
T ss_pred             HHHHHHHHHHHCCEEEEECCCCCCCCCEEEEEEECCCCCCC-------------CCCHHCCCCCCCCCEEEEEHH---HH
T ss_conf             45579999863160543025777999769997523777764-------------320102662104965999747---76


Q ss_pred             CCCCHHHHHHHHHHHCCCCCEEEEEEE
Q ss_conf             667802677699887699600598885
Q gi|254780359|r  145 VRPGHTEASVDLCKITGLPPIAVICEL  171 (210)
Q Consensus       145 ~R~GHTEaavdL~~lAGl~P~~vi~Ei  171 (210)
                      ..-|.-++++++.+-+|..++++.|-+
T Consensus       133 ~TG~T~~a~~~~l~~~Ga~vv~~~vlv  159 (202)
T d1o57a2         133 KAGGTINGMINLLDEFNANVAGIGVLV  159 (202)
T ss_dssp             SSSHHHHHHHHHTGGGTCEEEEEEEEE
T ss_pred             HHHHHHHHHHHHHHHCCCEEEEEEEEE
T ss_conf             516899999999998799899999999


No 13 
>d1j20a1 c.26.2.1 (A:1-165) Argininosuccinate synthetase, N-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=33.57  E-value=10  Score=16.61  Aligned_cols=16  Identities=13%  Similarity=0.389  Sum_probs=14.6

Q ss_pred             CHHHHHHHHHHHCCCE
Q ss_conf             9899999999838907
Q gi|254780359|r  180 KGKQVIEFSKKYDLKI  195 (210)
Q Consensus       180 ~~~~~~~fA~~~~lp~  195 (210)
                      +++|..+||++|+||+
T Consensus       149 ~k~ei~~ya~~~~iPv  164 (165)
T d1j20a1         149 GRKEMIAYAEAHGIPV  164 (165)
T ss_dssp             SHHHHHHHHHHTTCCC
T ss_pred             CHHHHHHHHHHHCCCC
T ss_conf             8999999999928899


No 14 
>d1vl2a1 c.26.2.1 (A:2-169) Argininosuccinate synthetase, N-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=33.04  E-value=7  Score=17.63  Aligned_cols=16  Identities=13%  Similarity=0.331  Sum_probs=13.9

Q ss_pred             CHHHHHHHHHHHCCCE
Q ss_conf             9899999999838907
Q gi|254780359|r  180 KGKQVIEFSKKYDLKI  195 (210)
Q Consensus       180 ~~~~~~~fA~~~~lp~  195 (210)
                      ++++..+||++||||+
T Consensus       153 sk~ei~~ya~~~~iPi  168 (168)
T d1vl2a1         153 GRTDLINYAMEKGIPI  168 (168)
T ss_dssp             --CHHHHHHHHHTCCC
T ss_pred             CHHHHHHHHHHCCCCC
T ss_conf             9999999999849999


No 15 
>d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium yoelii yoelii [TaxId: 73239]}
Probab=26.45  E-value=19  Score=14.85  Aligned_cols=37  Identities=24%  Similarity=0.363  Sum_probs=27.7

Q ss_pred             CCCCEEEEEEEEC-CCCCCCC----HHHHHHHHHHHCCCEEE
Q ss_conf             9960059888536-8875059----89999999983890777
Q gi|254780359|r  161 GLPPIAVICELVN-DDGTIKK----GKQVIEFSKKYDLKIIS  197 (210)
Q Consensus       161 Gl~P~~vi~Eil~-~~G~~~~----~~~~~~fA~~~~lp~i~  197 (210)
                      .-.-++||+|-+. ..|....    .+++.+++++||+++|-
T Consensus       184 ~~~iAavi~EPi~g~~G~~~~~~~fl~~l~~lc~~~g~llI~  225 (404)
T d1z7da1         184 DPNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVA  225 (404)
T ss_dssp             STTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEE
T ss_pred             CCCEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCEEEE
T ss_conf             997799999778388897409999999999999881978999


No 16 
>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.18  E-value=21  Score=14.59  Aligned_cols=54  Identities=24%  Similarity=0.365  Sum_probs=43.3

Q ss_pred             HHHHHHHHCCHH-----HHCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEE
Q ss_conf             999984201324-----313898500100126982466780267769988769960059
Q gi|254780359|r  114 IKNLANPHSIAD-----NFVRPGHIFPLISRDGGVLVRPGHTEASVDLCKITGLPPIAV  167 (210)
Q Consensus       114 Ir~la~~~~~~~-----df~~PGHV~pL~a~~gGvl~R~GHTEaavdL~~lAGl~P~~v  167 (210)
                      |..++.....|+     .|..|-|..||+---.|-...+-..+.+.++++..|..|+-|
T Consensus       130 i~~la~~~~~p~r~ig~HffnP~~~~~lVEIv~g~~T~~~~i~~~~~~~~~lgk~pV~v  188 (192)
T d1f0ya2         130 ITSIANATTRQDRFAGLHFFNPVPVMKLVEVIKTPMTSQKTFESLVDFSKALGKHPVSC  188 (192)
T ss_dssp             HHHHHTTSSCGGGEEEEEECSSTTTCCEEEEECCTTCCHHHHHHHHHHHHHTTCEEEEE
T ss_pred             CCHHHHHCCCHHHEEEECCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCEEEEE
T ss_conf             20233202587677851122666766679983899989999999999999869979996


No 17 
>d1im4a_ e.8.1.7 (A:) DinB homolog (DBH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]}
Probab=23.29  E-value=22  Score=14.48  Aligned_cols=63  Identities=17%  Similarity=0.188  Sum_probs=39.4

Q ss_pred             HHHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEEHHHCCHH----------HHHHHHHHCCCCEEEECCHHHHHHH
Q ss_conf             56699999999689829999677898870133484459999----------9999997089945861468999874
Q gi|254780359|r    9 ERYIEDVIQSFQKGEMVIVTDADDRENEADLVLAAIHCTSE----------KMAFIIRHTCGIVCTPMPFHTAHKL   74 (210)
Q Consensus         9 ~~~ie~ai~al~~G~~Viv~D~~dREnEgDlv~~Ae~vt~e----------~i~fm~~~~~Glic~al~~~~~~~L   74 (210)
                      |.++|.+.+-.-.|+||+|....++.+..-.|.++   +++          .+.-..+.+-.++.++-..+...+.
T Consensus        16 yasvE~~~~p~l~~~Pv~V~~~~~~~~~~g~i~a~---sy~Ar~~GI~~gm~~~~A~~~cP~l~~v~~~~~~Y~~~   88 (209)
T d1im4a_          16 FAQVEEVLNPQYKGKPLVVCVYSGRTKTSGAVATA---NYEARKLGVKAGMPIIKAMQIAPSAIYVPMRKPIYEAF   88 (209)
T ss_dssp             HHHHHHHHSGGGTTSCEEEEEEC----CCEEEEEE---CHHHHTTTCCTTCBHHHHHHHCTTSEEEECCHHHHHHH
T ss_pred             HHHHHHHHCCCCCCCCEEEEECCCCCCCCEEEEEC---CHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHH
T ss_conf             99999776824479988997168888787599974---99999708886135778986088630367518999999


No 18 
>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}
Probab=22.62  E-value=23  Score=14.40  Aligned_cols=54  Identities=28%  Similarity=0.365  Sum_probs=40.1

Q ss_pred             HHHHHHHHCCHH-----HHCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEE
Q ss_conf             999984201324-----313898500100126982466780267769988769960059
Q gi|254780359|r  114 IKNLANPHSIAD-----NFVRPGHIFPLISRDGGVLVRPGHTEASVDLCKITGLPPIAV  167 (210)
Q Consensus       114 Ir~la~~~~~~~-----df~~PGHV~pL~a~~gGvl~R~GHTEaavdL~~lAGl~P~~v  167 (210)
                      |..|+.....|+     .|..|-|+.||+---.|-..-+.-.+.+.++++..|..|+-|
T Consensus       124 i~~la~~~~~p~r~~g~Hf~nP~~~~~lVEiv~~~~T~~~~~~~~~~~~~~lgk~pv~v  182 (186)
T d1wdka3         124 ISLLAKALKRPENFVGMHFFNPVHMMPLVEVIRGEKSSDLAVATTVAYAKKMGKNPIVV  182 (186)
T ss_dssp             HHHHGGGCSCGGGEEEEECCSSTTTCCEEEEEECSSCCHHHHHHHHHHHHHTTCEEEEE
T ss_pred             HHHHHHHCCCCHHEEEECCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCEEEEE
T ss_conf             78887761574215861012675448769988999999999999999999869989997


No 19 
>d1k92a1 c.26.2.1 (A:1-188) Argininosuccinate synthetase, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=21.98  E-value=22  Score=14.53  Aligned_cols=17  Identities=12%  Similarity=0.139  Sum_probs=14.7

Q ss_pred             CCHHHHHHHHHHHCCCE
Q ss_conf             59899999999838907
Q gi|254780359|r  179 KKGKQVIEFSKKYDLKI  195 (210)
Q Consensus       179 ~~~~~~~~fA~~~~lp~  195 (210)
                      .+++|+.+||++||+|+
T Consensus       166 ~sk~ei~~ya~~~gi~~  182 (188)
T d1k92a1         166 GGRHEMSEFMIACGFDY  182 (188)
T ss_dssp             SSHHHHHHHHHHTTCCC
T ss_pred             CCHHHHHHHHHHCCCCC
T ss_conf             99999999999849999


No 20 
>d1lj8a4 c.2.1.6 (A:1-286) Mannitol 2-dehydrogenase {Pseudomonas fluorescens [TaxId: 294]}
Probab=20.57  E-value=25  Score=14.14  Aligned_cols=46  Identities=20%  Similarity=0.576  Sum_probs=33.1

Q ss_pred             HHHHCCCCCEEEE-EEEECCCCCCCCHHHHHHHHHHHCCCEEEHHHHHHHHHHC
Q ss_conf             9887699600598-8853688750598999999998389077799999999843
Q gi|254780359|r  156 LCKITGLPPIAVI-CELVNDDGTIKKGKQVIEFSKKYDLKIISVQDLIAWRKKK  208 (210)
Q Consensus       156 L~~lAGl~P~~vi-~Eil~~~G~~~~~~~~~~fA~~~~lp~i~i~dli~yr~~~  208 (210)
                      .-+.+|.+|..++ |+.+..+|+.++. .+.+||++.+      .++.+|-.++
T Consensus       175 ~R~~~~~~pitilsCDNl~~NG~~Lk~-~vl~~a~~~d------~~~~~Wi~~~  221 (286)
T d1lj8a4         175 QRRAAGIPAFTVMSCDNLPHNGAVTRK-ALLAFAALHN------AELHDWIKAH  221 (286)
T ss_dssp             HHHHTTCCCCEEEECSSCTTHHHHHHH-HHHHHHHHHC------HHHHHHHHHH
T ss_pred             HHHHCCCCCCEEEECHHHHHHHHHHHH-HHHHHHHHCC------HHHHHHHHHC
T ss_conf             998549998458744135566999999-9999987549------8888988744


No 21 
>d1knxa1 c.98.2.1 (A:1-132) HPr kinase/phoshatase HprK N-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}
Probab=20.48  E-value=22  Score=14.49  Aligned_cols=64  Identities=20%  Similarity=0.300  Sum_probs=44.4

Q ss_pred             CCCCCCEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHCCCEEE
Q ss_conf             898500100126982466780267769988769960059888536887505989999999983890777
Q gi|254780359|r  129 RPGHIFPLISRDGGVLVRPGHTEASVDLCKITGLPPIAVICELVNDDGTIKKGKQVIEFSKKYDLKIIS  197 (210)
Q Consensus       129 ~PGHV~pL~a~~gGvl~R~GHTEaavdL~~lAGl~P~~vi~Eil~~~G~~~~~~~~~~fA~~~~lp~i~  197 (210)
                      .|+.|..+-..+-..+.+-...+.---+-++....|.++|.-   .  +...-+++.+.|+++++|++.
T Consensus        49 ~~~RIQIlG~~E~~Yl~~l~~e~r~~~l~~l~~~~~PciIvt---~--~~~~p~~l~~~a~~~~vPll~  112 (132)
T d1knxa1          49 QIGSVAILGKREFGFLSQKTLVEQQQILHNLLKLNPPAIILT---K--SFTDPTVLLQVNQTYQVPILK  112 (132)
T ss_dssp             CCCBCEEECHHHHHHHTTSCHHHHTTTHHHHHTTCCSCEEEE---T--TTCCCHHHHHHGGGTCCCEEE
T ss_pred             CCCEEEEECHHHHHHHHHCCHHHHHHHHHHHHCCCCCEEEEE---C--CCCCCHHHHHHHHHCCCCEEE
T ss_conf             888589987999999996899999999999847699889997---9--799999999999982996898


Done!