RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254780359|ref|YP_003064772.1| GTP cyclohydrolase II protein (riboflavin biosynthesis) [Candidatus Liberibacter asiaticus str. psy62] (210 letters) >gnl|CDD|181774 PRK09311, PRK09311, bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional. Length = 402 Score = 285 bits (732), Expect = 5e-78 Identities = 103/198 (52%), Positives = 140/198 (70%) Query: 12 IEDVIQSFQKGEMVIVTDADDRENEADLVLAAIHCTSEKMAFIIRHTCGIVCTPMPFHTA 71 IE+ I G+ VIV D +DRENE DL+ AA T E +AF++RHT G VC P+ A Sbjct: 7 IEEAIADIAAGKAVIVVDDEDRENEGDLIFAAEKATPELVAFMVRHTSGYVCVPLTEEDA 66 Query: 72 HKLKLNPMVLENESVHKTAFTVSVDSKHGITTGISADDRAYTIKNLANPHSIADNFVRPG 131 +L L PMV N+ H TAFTVSVD+ +G+TTGISA DRA TI+ LA+P S +F RPG Sbjct: 67 DRLDLPPMVAHNQDSHGTAFTVSVDAANGVTTGISAADRATTIRLLADPASKPADFTRPG 126 Query: 132 HIFPLISRDGGVLVRPGHTEASVDLCKITGLPPIAVICELVNDDGTIKKGKQVIEFSKKY 191 H+FPL ++ GGVL R GHTEA+VDL ++ GL P VICE+VN+DGT+ + ++ F+ ++ Sbjct: 127 HVFPLRAKPGGVLRRAGHTEAAVDLARLAGLQPAGVICEIVNEDGTMARVPELRVFADEH 186 Query: 192 DLKIISVQDLIAWRKKKE 209 DL +I++ DLIA+R++ E Sbjct: 187 DLALITIADLIAYRRRHE 204 >gnl|CDD|181775 PRK09314, PRK09314, bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional. Length = 339 Score = 260 bits (667), Expect = 2e-70 Identities = 106/198 (53%), Positives = 144/198 (72%), Gaps = 1/198 (0%) Query: 12 IEDVIQSFQKGEMVIVTDADDRENEADLVLAAIHCTSEKMAFIIRHTCGIVCTPMPFHTA 71 +E+ I+ + G+M+I+ D +DRENE DLV AAI T EK+ F+ H G++C + A Sbjct: 6 VEEAIEDIKNGKMLIMVDDEDRENEGDLVYAAIFSTPEKVNFMATHARGLICVSLTKELA 65 Query: 72 HKLKLNPMVLENESVHKTAFTVSVDSKHGITTGISADDRAYTIKNLANPHSIADNFVRPG 131 KL+L PMV +N S H+TAFTVS+D+K TTGISA +R TIK LA+ S +FVRPG Sbjct: 66 KKLELPPMVSKNTSNHETAFTVSIDAKEA-TTGISAFERDMTIKLLADDTSKPSDFVRPG 124 Query: 132 HIFPLISRDGGVLVRPGHTEASVDLCKITGLPPIAVICELVNDDGTIKKGKQVIEFSKKY 191 HIFPLI++DGGVLVR GHTE SVDLCK+ GL P+AVICE++ +DGT+ + + +F+KK+ Sbjct: 125 HIFPLIAKDGGVLVRTGHTEGSVDLCKLAGLKPVAVICEIMKEDGTMARRDDLEDFAKKH 184 Query: 192 DLKIISVQDLIAWRKKKE 209 +LK+I V DL+ +R K E Sbjct: 185 NLKMIYVSDLVEYRLKNE 202 >gnl|CDD|178425 PLN02831, PLN02831, Bifunctional GTP cyclohydrolase II/ 3,4-dihydroxy-2-butanone-4-phosphate synthase. Length = 450 Score = 257 bits (659), Expect = 1e-69 Identities = 104/201 (51%), Positives = 144/201 (71%), Gaps = 3/201 (1%) Query: 12 IEDVIQSFQKGEMVIVTDADDRENEADLVLAAIHCTSEKMAFIIRHTCGIVCTPMPFHTA 71 I + ++ ++G+ V+V D +DRENE DL++AA T E MAF+++H GIVC M Sbjct: 38 IAEALEDIRQGKFVVVVDDEDRENEGDLIMAASLVTPEAMAFLVKHGSGIVCVSMKGEDL 97 Query: 72 HKLKLNPMV--LENESVHKTAFTVSVDSKHGITTGISADDRAYTIKNLANPHSIADNFVR 129 +L+L MV ENE TAFTV+VD+KHG TTG+SA DRA TI LA+P S ++F R Sbjct: 98 DRLRLPLMVPSKENEEKMATAFTVTVDAKHGTTTGVSASDRAKTILALASPDSKPEDFRR 157 Query: 130 PGHIFPLISRDGGVLVRPGHTEASVDLCKITGLPPIAVICELVND-DGTIKKGKQVIEFS 188 PGHIFPL R+GGVL R GHTEA+VDL + GLPP+ V+CE+VND DG++ + Q+ +F+ Sbjct: 158 PGHIFPLRYREGGVLKRAGHTEAAVDLAVLAGLPPVGVLCEIVNDEDGSMARLPQLRKFA 217 Query: 189 KKYDLKIISVQDLIAWRKKKE 209 +++ LKIIS+ DLI +R+K+E Sbjct: 218 EEHGLKIISIADLIRYRRKRE 238 >gnl|CDD|179565 PRK03353, ribB, 3,4-dihydroxy-2-butanone 4-phosphate synthase; Provisional. Length = 217 Score = 234 bits (600), Expect = 8e-63 Identities = 86/201 (42%), Positives = 131/201 (65%), Gaps = 1/201 (0%) Query: 9 ERYIEDVIQSFQKGEMVIVTDADDRENEADLVLAAIHCTSEKMAFIIRHTCGIVCTPMPF 68 ER +E + + ++G V+V D +DRENE D++ AA T E+MA IRH GIVC + Sbjct: 14 ER-VEAALDALREGRGVMVLDDEDRENEGDMIFAAETMTVEQMALTIRHGSGIVCLCLTE 72 Query: 69 HTAHKLKLNPMVLENESVHKTAFTVSVDSKHGITTGISADDRAYTIKNLANPHSIADNFV 128 +L L MV N S + TAFTV++++ G+TTG+SA DR TI+ + + Sbjct: 73 ERRKQLDLPMMVENNTSQYGTAFTVTIEAAEGVTTGVSAADRITTIRAAIADGAKPSDLN 132 Query: 129 RPGHIFPLISRDGGVLVRPGHTEASVDLCKITGLPPIAVICELVNDDGTIKKGKQVIEFS 188 RPGH+FPL ++ GGVL R GHTEA++DL + GL P V+CEL NDDGT+ + + I F+ Sbjct: 133 RPGHVFPLRAQPGGVLTRRGHTEATIDLMTLAGLKPAGVLCELTNDDGTMARAPECIAFA 192 Query: 189 KKYDLKIISVQDLIAWRKKKE 209 K++++ +++++DL+A+R+ E Sbjct: 193 KQHNMPVLTIEDLVAYRQAHE 213 >gnl|CDD|161903 TIGR00506, ribB, 3,4-dihydroxy-2-butanone 4-phosphate synthase. Several members of the family are bifunctional, involving both ribA and ribB function. In these cases, ribA tends to be on the C-terminal end of the protein and ribB tends to be on the N-terminal. Length = 199 Score = 233 bits (595), Expect = 3e-62 Identities = 94/195 (48%), Positives = 135/195 (69%), Gaps = 1/195 (0%) Query: 12 IEDVIQSFQKGEMVIVTDADDRENEADLVLAAIHCTSEKMAFIIRHTCGIVCTPMPFHTA 71 +E+ +++ +KGE+V+V D +DRENE DL++AA T E++AF+ RH G++C + A Sbjct: 5 VEEALEALKKGEIVLVYDDEDRENEGDLIVAAEFITPEQIAFMRRHAGGLICVAITPDIA 64 Query: 72 HKLKLNPMVLENESVHKTAFTVSVDSKHGIT-TGISADDRAYTIKNLANPHSIADNFVRP 130 KL L PMV N S TA T ++ H T TGISA+DRA TI+ +F RP Sbjct: 65 DKLDLPPMVDINTSASGTASTFTITVAHRKTFTGISANDRALTIRAALADVVKPSDFRRP 124 Query: 131 GHIFPLISRDGGVLVRPGHTEASVDLCKITGLPPIAVICELVNDDGTIKKGKQVIEFSKK 190 GH+FPL + DGGVL R GHTEASVDL ++ GL P VICE++NDDGT+ + +++E++KK Sbjct: 125 GHVFPLRAADGGVLTRGGHTEASVDLAELAGLKPAGVICEMMNDDGTMARKPELMEYAKK 184 Query: 191 YDLKIISVQDLIAWR 205 ++LK+IS++DLI +R Sbjct: 185 HNLKLISIEDLIEYR 199 >gnl|CDD|184457 PRK14019, PRK14019, bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein; Provisional. Length = 367 Score = 231 bits (590), Expect = 1e-61 Identities = 89/198 (44%), Positives = 129/198 (65%) Query: 12 IEDVIQSFQKGEMVIVTDADDRENEADLVLAAIHCTSEKMAFIIRHTCGIVCTPMPFHTA 71 IE++I + G MVI+ D +DRENE DLV+AA T E + F+ +H G++C + Sbjct: 6 IEEIIADIRAGRMVILVDEEDRENEGDLVMAAEFVTPEAINFMAKHGRGLICLTLTEERC 65 Query: 72 HKLKLNPMVLENESVHKTAFTVSVDSKHGITTGISADDRAYTIKNLANPHSIADNFVRPG 131 +L L M N + + T FTVS+++ G+TTGISA DRA TI+ + ++ V+PG Sbjct: 66 EQLGLPLMTYRNGTQYGTNFTVSIEAAEGVTTGISAADRARTIQAAVARDAKPEDIVQPG 125 Query: 132 HIFPLISRDGGVLVRPGHTEASVDLCKITGLPPIAVICELVNDDGTIKKGKQVIEFSKKY 191 HIFPL+++ GGVLVR GHTEA DL + GL P AVICE++ DDGT+ + + EF+K++ Sbjct: 126 HIFPLMAQPGGVLVRAGHTEAGCDLAALAGLTPAAVICEIMKDDGTMARLPDLEEFAKEH 185 Query: 192 DLKIISVQDLIAWRKKKE 209 LKI ++ DLI +R + E Sbjct: 186 GLKIGTIADLIHYRSRTE 203 >gnl|CDD|179162 PRK00910, ribB, 3,4-dihydroxy-2-butanone 4-phosphate synthase; Provisional. Length = 218 Score = 211 bits (538), Expect = 1e-55 Identities = 89/199 (44%), Positives = 140/199 (70%) Query: 12 IEDVIQSFQKGEMVIVTDADDRENEADLVLAAIHCTSEKMAFIIRHTCGIVCTPMPFHTA 71 +E+ +Q+ ++G V++ D +DRENE D++ + H T+ +MA +IR GIVC + A Sbjct: 17 VENALQALREGRGVLLLDDEDRENEGDIIYSVEHLTNAQMALMIRECSGIVCLCLTDAQA 76 Query: 72 HKLKLNPMVLENESVHKTAFTVSVDSKHGITTGISADDRAYTIKNLANPHSIADNFVRPG 131 KL+L PMV+ N S ++TAFTVS+++KHG+TTG+SA DR TIK ANP + ++ RPG Sbjct: 77 DKLELPPMVVNNNSANQTAFTVSIEAKHGVTTGVSAQDRVTTIKTAANPQAKPEDLARPG 136 Query: 132 HIFPLISRDGGVLVRPGHTEASVDLCKITGLPPIAVICELVNDDGTIKKGKQVIEFSKKY 191 H+FPL +R GGVL R GHTE +VDL ++ GL P V+CEL N DGT+ K ++I F K + Sbjct: 137 HVFPLRARAGGVLARRGHTEGTVDLMQMAGLQPAGVLCELTNPDGTMAKTPEIIAFGKLH 196 Query: 192 DLKIISVQDLIAWRKKKEI 210 ++ +++++D++ +R + ++ Sbjct: 197 NMPVLTIEDMVMYRNQFDL 215 >gnl|CDD|167278 PRK01792, ribB, 3,4-dihydroxy-2-butanone 4-phosphate synthase; Provisional. Length = 214 Score = 202 bits (514), Expect = 7e-53 Identities = 89/203 (43%), Positives = 134/203 (66%), Gaps = 1/203 (0%) Query: 8 DERYIEDVIQSFQKGEMVIVTDADDRENEADLVLAAIHCTSEKMAFIIRHTCGIVCTPMP 67 +ER I I +F++G V+V D +DRENE DL+ A T E+MA +IR+ GIVC + Sbjct: 13 EERVIN-AINAFKQGNGVLVLDDEDRENEGDLIFPAETITPEQMAKLIRYGSGIVCLCIT 71 Query: 68 FHTAHKLKLNPMVLENESVHKTAFTVSVDSKHGITTGISADDRAYTIKNLANPHSIADNF 127 +L L PMV N SV+KTAFTV++++ G++TG+SA DR TI+ ++ + Sbjct: 72 DELCQQLDLPPMVQHNTSVNKTAFTVTIEAAKGVSTGVSAADRVTTIQAAIADNAKPSDL 131 Query: 128 VRPGHIFPLISRDGGVLVRPGHTEASVDLCKITGLPPIAVICELVNDDGTIKKGKQVIEF 187 RPGH+FPL + +GGVL R GHTEA+VDL ++ G VICE+ NDDGT+ + +++EF Sbjct: 132 HRPGHVFPLRAANGGVLTRRGHTEAAVDLARLAGYKEAGVICEITNDDGTMARTPEIVEF 191 Query: 188 SKKYDLKIISVQDLIAWRKKKEI 210 +KK+ +++++DL+ +R K I Sbjct: 192 AKKFGYAVVTIEDLVEYRLKYNI 214 >gnl|CDD|171535 PRK12485, PRK12485, bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein; Provisional. Length = 369 Score = 200 bits (510), Expect = 2e-52 Identities = 87/198 (43%), Positives = 132/198 (66%) Query: 12 IEDVIQSFQKGEMVIVTDADDRENEADLVLAAIHCTSEKMAFIIRHTCGIVCTPMPFHTA 71 IE++I+ +++G+MV++ D +DRENE DL+LAA C ++ + F+ R G++C + Sbjct: 6 IEEIIEDYRQGKMVLLVDDEDRENEGDLLLAAERCDAQAINFMAREARGLICLTLTDEHC 65 Query: 72 HKLKLNPMVLENESVHKTAFTVSVDSKHGITTGISADDRAYTIKNLANPHSIADNFVRPG 131 +L L MV N SV TAFTVS+++ G+TTGISA DRA T+ P++ ++ V+PG Sbjct: 66 QRLGLEQMVPSNGSVFSTAFTVSIEAATGVTTGISAADRARTVAAAVAPNARPEDLVQPG 125 Query: 132 HIFPLISRDGGVLVRPGHTEASVDLCKITGLPPIAVICELVNDDGTIKKGKQVIEFSKKY 191 HIFPL +R+GGVL R GHTEA DL ++ G P +VI E++NDDGT+ + + F+ K+ Sbjct: 126 HIFPLRAREGGVLTRAGHTEAGCDLARLAGFSPASVIVEVMNDDGTMARRPDLEVFAAKH 185 Query: 192 DLKIISVQDLIAWRKKKE 209 +KI ++ DLI +R E Sbjct: 186 GIKIGTIADLIHYRLSTE 203 >gnl|CDD|181777 PRK09319, PRK09319, bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II/unknown domain fusion protein; Provisional. Length = 555 Score = 197 bits (503), Expect = 2e-51 Identities = 88/200 (44%), Positives = 134/200 (67%), Gaps = 2/200 (1%) Query: 12 IEDVIQSFQKGEMVIVTDADDRENEADLVLAAIHCTSEKMAFIIRHTCGIVCTPMPFHTA 71 I+D + + + GE V+V D ++RENE DL+ AA T E + F+ G++C M Sbjct: 8 IDDALAAIRNGECVVVVDDENRENEGDLICAAQFATPEMINFMATEARGLICLAMTGERL 67 Query: 72 HKLKLNPMVLENESVHKTAFTVSVDS--KHGITTGISADDRAYTIKNLANPHSIADNFVR 129 +L L MV N ++TAFTVS+D+ + G++TGISA+DRA TI+ NP + ++ R Sbjct: 68 DELDLPLMVDRNTDSNQTAFTVSIDAGPELGVSTGISAEDRARTIQVAINPDTKPEDLRR 127 Query: 130 PGHIFPLISRDGGVLVRPGHTEASVDLCKITGLPPIAVICELVNDDGTIKKGKQVIEFSK 189 PGHIFPL +++GGVL R GHTEA+VDL ++ GL P VICE+ N DG++ + ++ E++K Sbjct: 128 PGHIFPLRAKEGGVLKRAGHTEAAVDLARLAGLYPAGVICEIQNPDGSMARLPELKEYAK 187 Query: 190 KYDLKIISVQDLIAWRKKKE 209 ++ LK+IS+ DLI++R + E Sbjct: 188 QHGLKLISIADLISYRLQNE 207 >gnl|CDD|134031 PRK00014, ribB, 3,4-dihydroxy-2-butanone 4-phosphate synthase; Provisional. Length = 230 Score = 180 bits (458), Expect = 2e-46 Identities = 87/192 (45%), Positives = 123/192 (64%) Query: 12 IEDVIQSFQKGEMVIVTDADDRENEADLVLAAIHCTSEKMAFIIRHTCGIVCTPMPFHTA 71 +E +Q + G VI+ D DRENEADL++AA T MA +IR GIVC +P T Sbjct: 21 LERALQHLRIGRPVILMDDFDRENEADLIVAADKLTVPVMAQLIRDGSGIVCLCLPGETL 80 Query: 72 HKLKLNPMVLENESVHKTAFTVSVDSKHGITTGISADDRAYTIKNLANPHSIADNFVRPG 131 +L+L PMV N S + TAFTVS++++ G+TTG+SA DR TI+ P + + + V PG Sbjct: 81 DRLELPPMVDSNRSRYSTAFTVSIEAREGVTTGVSAVDRVTTIRAAIAPGARSGDVVSPG 140 Query: 132 HIFPLISRDGGVLVRPGHTEASVDLCKITGLPPIAVICELVNDDGTIKKGKQVIEFSKKY 191 H+FPL ++ GGVL R GHTE SVDL + GL P V+CEL+N DGT+ +G + ++ K Sbjct: 141 HVFPLRAQPGGVLTRRGHTEGSVDLAALAGLRPAGVLCELMNADGTMMRGASLERYAAKE 200 Query: 192 DLKIISVQDLIA 203 L +++ +L A Sbjct: 201 GLVALAIDELAA 212 >gnl|CDD|181776 PRK09318, PRK09318, bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional. Length = 387 Score = 114 bits (288), Expect = 1e-26 Identities = 63/204 (30%), Positives = 109/204 (53%), Gaps = 18/204 (8%) Query: 12 IEDVIQSFQKGEMVIVTDADDRENEADLVLAAIHCTSEKMAFIIRHTCGIVCTPMPFHTA 71 +E++ ++F +G+ VI+ D +RENEAD V A T E + F + + G++C Sbjct: 1 MEELREAFLEGKPVILID-RNRENEADFVYPAQIITEEVVNFFLSYGKGLLCLTADEEDL 59 Query: 72 HKLKLNPMVLENESVHKTAFTVSVDSKHGITTGISADDRAYTIKNLANPHSIADNFVRPG 131 K + N +T F + VD +G TGISA +RA T + LA + + F PG Sbjct: 60 LKRGFFKLP-SNGG--ETNFFIPVD--YGTGTGISASERALTCRKLAEGLYVHE-FRYPG 113 Query: 132 HIFPLISRDGGVLV--RPGHTEASVDLCKITGLPPIAVICELVNDDGTIKKGKQVIEFSK 189 H+ L GG+ R GHTEAS++L ++ G AVI E++++ G V++ ++ Sbjct: 114 HVTLL----GGIGFNRRRGHTEASLELSELLGFKRYAVIVEILDEKGDSHDLDYVLKLAE 169 Query: 190 KYDLKIISVQDLIAWR---KKKEI 210 K+ L ++ + D+ W+ ++K++ Sbjct: 170 KFSLPVLEIDDV--WKEFVRRKQL 191 >gnl|CDD|180250 PRK05773, PRK05773, 3,4-dihydroxy-2-butanone 4-phosphate synthase; Validated. Length = 219 Score = 79.3 bits (196), Expect = 7e-16 Identities = 58/218 (26%), Positives = 98/218 (44%), Gaps = 31/218 (14%) Query: 12 IEDVIQSFQKGEMVIVTDADDRENEADLVLAAIHCTSEKMAFIIRHTCGIVCTPMPFHTA 71 E+ ++ + G V++ D D RE E D+V A T + + + ++ G++C Sbjct: 3 FEEARKALESGIPVLIYDFDGREEEVDMVFYAGAVTWKSIYTLRKNAGGLICYATSNSEG 62 Query: 72 HKLKLNPMV--LENESVHK-----------TAFTVSVDSKHGIT-TGISADDRAYTIKNL 117 L LN + L+ +++ AF++ V+ H T TGIS DRA TI+ L Sbjct: 63 KTLGLNFLAEILKRHELYRKLVKKPSYGDEPAFSLWVN--HVKTKTGISDYDRALTIREL 120 Query: 118 ANPHSIA------------DNFVRPGHIFPLISRDGGVLVRPGHTEASVDLCKITGLPPI 165 +A +NF PGH+ LI R R GHTE S+ L + GL P Sbjct: 121 HKVVELAKTNPEEAREEFYENFYSPGHVPILIGRGIRE--RRGHTELSIALAQAAGLEPS 178 Query: 166 AVICELVNDDGTIKKGKQVIEFSKKYDLKIISVQDLIA 203 AVI E++ D+ ++ + +K ++ +++ Sbjct: 179 AVIAEML-DEKLSLSKEKAKKIAKNLGFPLVEGKEIFK 215 >gnl|CDD|185150 PRK15235, PRK15235, outer membrane fimbrial usher protein SefC; Provisional. Length = 814 Score = 30.9 bits (69), Expect = 0.26 Identities = 37/146 (25%), Positives = 57/146 (39%), Gaps = 24/146 (16%) Query: 84 ESVHKTAFTVSVDSKHGITT----GISADDRAYTIKNLANPHSIADNFVRPGHIFPLISR 139 +S+ TA V G G+ D R YTI + P+ +NF+ I+ Sbjct: 644 QSISDTAALVEAKGVSGAKVLGLPGVRTDFRGYTISSYLTPY--MNNFISIDPTTLPINT 701 Query: 140 D-----------GGVLVRPGH-----TEASVDLCKITGLP-PIAVICELVNDDGTIKKGK 182 D G +V+ + T A + + + G P + + L N+DG I+ Sbjct: 702 DIRQTDIQVVPTEGAIVKAVYKTSVGTNALIRITRTNGKPLALGTVLSLKNNDGVIQSTS 761 Query: 183 QVIEFSKKYDLKIISVQDLIA-WRKK 207 V E + Y + VQ LIA W K Sbjct: 762 IVGEDGQAYVSGLSGVQKLIASWGNK 787 >gnl|CDD|151063 pfam10504, DUF2452, Protein of unknown function (DUF2452). This protein is found in eukaryotes but its function is unknown. Length = 160 Score = 29.0 bits (65), Expect = 1.0 Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 1/26 (3%) Query: 118 ANPHSIADNFV-RPGHIFPLISRDGG 142 A+ H A NFV +PG+I+ L R G Sbjct: 79 ADLHHAACNFVKKPGNIYHLYKRPSG 104 >gnl|CDD|181082 PRK07682, PRK07682, hypothetical protein; Validated. Length = 378 Score = 26.6 bits (59), Expect = 5.1 Identities = 17/74 (22%), Positives = 31/74 (41%), Gaps = 12/74 (16%) Query: 135 PLISRDGGVLVRPGHTEASVDL--------CKITGLPPIAVICELVNDDGTI---KKGKQ 183 PL++ GGV V P T + IT ++C N G + + ++ Sbjct: 120 PLVTLAGGVPV-PVATTLENEFKVQPAQIEAAITAKTKAILLCSPNNPTGAVLNKSELEE 178 Query: 184 VIEFSKKYDLKIIS 197 + +K+DL ++S Sbjct: 179 IAVIVEKHDLIVLS 192 >gnl|CDD|183625 PRK12617, flgA, flagellar basal body P-ring biosynthesis protein FlgA; Reviewed. Length = 214 Score = 26.4 bits (58), Expect = 5.2 Identities = 12/30 (40%), Positives = 18/30 (60%) Query: 117 LANPHSIADNFVRPGHIFPLISRDGGVLVR 146 L+ ++ VR G PL+SR+GG+ VR Sbjct: 145 LSANDLVSQRLVRRGDTVPLVSRNGGLEVR 174 >gnl|CDD|169656 PRK09099, PRK09099, type III secretion system ATPase; Provisional. Length = 441 Score = 26.3 bits (58), Expect = 5.6 Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 9/76 (11%) Query: 123 IADNFVRPGHIFPLISRDGGVLVRPGHTEASVDLCKITGLP-PIAVICELVNDDGTIKKG 181 +AD R P + R G V+ E L +++GL + +CEL DGT+ + Sbjct: 8 LADALERELAALPAVRRTGKVV------EVIGTLLRVSGLDVTLGELCELRQRDGTLLQR 61 Query: 182 KQVIEFSKKYDLKIIS 197 +V+ FS+ D+ ++S Sbjct: 62 AEVVGFSR--DVALLS 75 >gnl|CDD|178187 PLN02575, PLN02575, haloacid dehalogenase-like hydrolase. Length = 381 Score = 26.4 bits (58), Expect = 5.8 Identities = 17/39 (43%), Positives = 21/39 (53%) Query: 23 EMVIVTDADDRENEADLVLAAIHCTSEKMAFIIRHTCGI 61 E VI+ D D EN+A L LA S AFI+R G+ Sbjct: 139 EGVIIEDNPDLENQAWLTLAQEEGKSPPPAFILRRVEGM 177 >gnl|CDD|180665 PRK06707, PRK06707, amidase; Provisional. Length = 536 Score = 26.4 bits (58), Expect = 6.3 Identities = 7/21 (33%), Positives = 17/21 (80%) Query: 187 FSKKYDLKIISVQDLIAWRKK 207 FS++ ++ + S++++IA+ KK Sbjct: 398 FSQQKNVPVKSLEEIIAFNKK 418 >gnl|CDD|178996 PRK00390, leuS, leucyl-tRNA synthetase; Validated. Length = 805 Score = 25.8 bits (58), Expect = 7.7 Identities = 8/13 (61%), Positives = 9/13 (69%) Query: 186 EFSKKYDLKIISV 198 EF+KKY L I V Sbjct: 346 EFAKKYGLPIKPV 358 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.320 0.136 0.398 Gapped Lambda K H 0.267 0.0728 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 3,369,012 Number of extensions: 205322 Number of successful extensions: 459 Number of sequences better than 10.0: 1 Number of HSP's gapped: 447 Number of HSP's successfully gapped: 28 Length of query: 210 Length of database: 5,994,473 Length adjustment: 89 Effective length of query: 121 Effective length of database: 4,071,361 Effective search space: 492634681 Effective search space used: 492634681 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 55 (25.0 bits)