RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780359|ref|YP_003064772.1| GTP cyclohydrolase II protein
(riboflavin biosynthesis) [Candidatus Liberibacter asiaticus str.
psy62]
(210 letters)
>gnl|CDD|181774 PRK09311, PRK09311, bifunctional 3,4-dihydroxy-2-butanone
4-phosphate synthase/GTP cyclohydrolase II protein;
Provisional.
Length = 402
Score = 285 bits (732), Expect = 5e-78
Identities = 103/198 (52%), Positives = 140/198 (70%)
Query: 12 IEDVIQSFQKGEMVIVTDADDRENEADLVLAAIHCTSEKMAFIIRHTCGIVCTPMPFHTA 71
IE+ I G+ VIV D +DRENE DL+ AA T E +AF++RHT G VC P+ A
Sbjct: 7 IEEAIADIAAGKAVIVVDDEDRENEGDLIFAAEKATPELVAFMVRHTSGYVCVPLTEEDA 66
Query: 72 HKLKLNPMVLENESVHKTAFTVSVDSKHGITTGISADDRAYTIKNLANPHSIADNFVRPG 131
+L L PMV N+ H TAFTVSVD+ +G+TTGISA DRA TI+ LA+P S +F RPG
Sbjct: 67 DRLDLPPMVAHNQDSHGTAFTVSVDAANGVTTGISAADRATTIRLLADPASKPADFTRPG 126
Query: 132 HIFPLISRDGGVLVRPGHTEASVDLCKITGLPPIAVICELVNDDGTIKKGKQVIEFSKKY 191
H+FPL ++ GGVL R GHTEA+VDL ++ GL P VICE+VN+DGT+ + ++ F+ ++
Sbjct: 127 HVFPLRAKPGGVLRRAGHTEAAVDLARLAGLQPAGVICEIVNEDGTMARVPELRVFADEH 186
Query: 192 DLKIISVQDLIAWRKKKE 209
DL +I++ DLIA+R++ E
Sbjct: 187 DLALITIADLIAYRRRHE 204
>gnl|CDD|181775 PRK09314, PRK09314, bifunctional 3,4-dihydroxy-2-butanone
4-phosphate synthase/GTP cyclohydrolase II protein;
Provisional.
Length = 339
Score = 260 bits (667), Expect = 2e-70
Identities = 106/198 (53%), Positives = 144/198 (72%), Gaps = 1/198 (0%)
Query: 12 IEDVIQSFQKGEMVIVTDADDRENEADLVLAAIHCTSEKMAFIIRHTCGIVCTPMPFHTA 71
+E+ I+ + G+M+I+ D +DRENE DLV AAI T EK+ F+ H G++C + A
Sbjct: 6 VEEAIEDIKNGKMLIMVDDEDRENEGDLVYAAIFSTPEKVNFMATHARGLICVSLTKELA 65
Query: 72 HKLKLNPMVLENESVHKTAFTVSVDSKHGITTGISADDRAYTIKNLANPHSIADNFVRPG 131
KL+L PMV +N S H+TAFTVS+D+K TTGISA +R TIK LA+ S +FVRPG
Sbjct: 66 KKLELPPMVSKNTSNHETAFTVSIDAKEA-TTGISAFERDMTIKLLADDTSKPSDFVRPG 124
Query: 132 HIFPLISRDGGVLVRPGHTEASVDLCKITGLPPIAVICELVNDDGTIKKGKQVIEFSKKY 191
HIFPLI++DGGVLVR GHTE SVDLCK+ GL P+AVICE++ +DGT+ + + +F+KK+
Sbjct: 125 HIFPLIAKDGGVLVRTGHTEGSVDLCKLAGLKPVAVICEIMKEDGTMARRDDLEDFAKKH 184
Query: 192 DLKIISVQDLIAWRKKKE 209
+LK+I V DL+ +R K E
Sbjct: 185 NLKMIYVSDLVEYRLKNE 202
>gnl|CDD|178425 PLN02831, PLN02831, Bifunctional GTP cyclohydrolase II/
3,4-dihydroxy-2-butanone-4-phosphate synthase.
Length = 450
Score = 257 bits (659), Expect = 1e-69
Identities = 104/201 (51%), Positives = 144/201 (71%), Gaps = 3/201 (1%)
Query: 12 IEDVIQSFQKGEMVIVTDADDRENEADLVLAAIHCTSEKMAFIIRHTCGIVCTPMPFHTA 71
I + ++ ++G+ V+V D +DRENE DL++AA T E MAF+++H GIVC M
Sbjct: 38 IAEALEDIRQGKFVVVVDDEDRENEGDLIMAASLVTPEAMAFLVKHGSGIVCVSMKGEDL 97
Query: 72 HKLKLNPMV--LENESVHKTAFTVSVDSKHGITTGISADDRAYTIKNLANPHSIADNFVR 129
+L+L MV ENE TAFTV+VD+KHG TTG+SA DRA TI LA+P S ++F R
Sbjct: 98 DRLRLPLMVPSKENEEKMATAFTVTVDAKHGTTTGVSASDRAKTILALASPDSKPEDFRR 157
Query: 130 PGHIFPLISRDGGVLVRPGHTEASVDLCKITGLPPIAVICELVND-DGTIKKGKQVIEFS 188
PGHIFPL R+GGVL R GHTEA+VDL + GLPP+ V+CE+VND DG++ + Q+ +F+
Sbjct: 158 PGHIFPLRYREGGVLKRAGHTEAAVDLAVLAGLPPVGVLCEIVNDEDGSMARLPQLRKFA 217
Query: 189 KKYDLKIISVQDLIAWRKKKE 209
+++ LKIIS+ DLI +R+K+E
Sbjct: 218 EEHGLKIISIADLIRYRRKRE 238
>gnl|CDD|179565 PRK03353, ribB, 3,4-dihydroxy-2-butanone 4-phosphate synthase;
Provisional.
Length = 217
Score = 234 bits (600), Expect = 8e-63
Identities = 86/201 (42%), Positives = 131/201 (65%), Gaps = 1/201 (0%)
Query: 9 ERYIEDVIQSFQKGEMVIVTDADDRENEADLVLAAIHCTSEKMAFIIRHTCGIVCTPMPF 68
ER +E + + ++G V+V D +DRENE D++ AA T E+MA IRH GIVC +
Sbjct: 14 ER-VEAALDALREGRGVMVLDDEDRENEGDMIFAAETMTVEQMALTIRHGSGIVCLCLTE 72
Query: 69 HTAHKLKLNPMVLENESVHKTAFTVSVDSKHGITTGISADDRAYTIKNLANPHSIADNFV 128
+L L MV N S + TAFTV++++ G+TTG+SA DR TI+ + +
Sbjct: 73 ERRKQLDLPMMVENNTSQYGTAFTVTIEAAEGVTTGVSAADRITTIRAAIADGAKPSDLN 132
Query: 129 RPGHIFPLISRDGGVLVRPGHTEASVDLCKITGLPPIAVICELVNDDGTIKKGKQVIEFS 188
RPGH+FPL ++ GGVL R GHTEA++DL + GL P V+CEL NDDGT+ + + I F+
Sbjct: 133 RPGHVFPLRAQPGGVLTRRGHTEATIDLMTLAGLKPAGVLCELTNDDGTMARAPECIAFA 192
Query: 189 KKYDLKIISVQDLIAWRKKKE 209
K++++ +++++DL+A+R+ E
Sbjct: 193 KQHNMPVLTIEDLVAYRQAHE 213
>gnl|CDD|161903 TIGR00506, ribB, 3,4-dihydroxy-2-butanone 4-phosphate synthase.
Several members of the family are bifunctional,
involving both ribA and ribB function. In these cases,
ribA tends to be on the C-terminal end of the protein
and ribB tends to be on the N-terminal.
Length = 199
Score = 233 bits (595), Expect = 3e-62
Identities = 94/195 (48%), Positives = 135/195 (69%), Gaps = 1/195 (0%)
Query: 12 IEDVIQSFQKGEMVIVTDADDRENEADLVLAAIHCTSEKMAFIIRHTCGIVCTPMPFHTA 71
+E+ +++ +KGE+V+V D +DRENE DL++AA T E++AF+ RH G++C + A
Sbjct: 5 VEEALEALKKGEIVLVYDDEDRENEGDLIVAAEFITPEQIAFMRRHAGGLICVAITPDIA 64
Query: 72 HKLKLNPMVLENESVHKTAFTVSVDSKHGIT-TGISADDRAYTIKNLANPHSIADNFVRP 130
KL L PMV N S TA T ++ H T TGISA+DRA TI+ +F RP
Sbjct: 65 DKLDLPPMVDINTSASGTASTFTITVAHRKTFTGISANDRALTIRAALADVVKPSDFRRP 124
Query: 131 GHIFPLISRDGGVLVRPGHTEASVDLCKITGLPPIAVICELVNDDGTIKKGKQVIEFSKK 190
GH+FPL + DGGVL R GHTEASVDL ++ GL P VICE++NDDGT+ + +++E++KK
Sbjct: 125 GHVFPLRAADGGVLTRGGHTEASVDLAELAGLKPAGVICEMMNDDGTMARKPELMEYAKK 184
Query: 191 YDLKIISVQDLIAWR 205
++LK+IS++DLI +R
Sbjct: 185 HNLKLISIEDLIEYR 199
>gnl|CDD|184457 PRK14019, PRK14019, bifunctional 3,4-dihydroxy-2-butanone
4-phosphate synthase/GTP cyclohydrolase II-like protein;
Provisional.
Length = 367
Score = 231 bits (590), Expect = 1e-61
Identities = 89/198 (44%), Positives = 129/198 (65%)
Query: 12 IEDVIQSFQKGEMVIVTDADDRENEADLVLAAIHCTSEKMAFIIRHTCGIVCTPMPFHTA 71
IE++I + G MVI+ D +DRENE DLV+AA T E + F+ +H G++C +
Sbjct: 6 IEEIIADIRAGRMVILVDEEDRENEGDLVMAAEFVTPEAINFMAKHGRGLICLTLTEERC 65
Query: 72 HKLKLNPMVLENESVHKTAFTVSVDSKHGITTGISADDRAYTIKNLANPHSIADNFVRPG 131
+L L M N + + T FTVS+++ G+TTGISA DRA TI+ + ++ V+PG
Sbjct: 66 EQLGLPLMTYRNGTQYGTNFTVSIEAAEGVTTGISAADRARTIQAAVARDAKPEDIVQPG 125
Query: 132 HIFPLISRDGGVLVRPGHTEASVDLCKITGLPPIAVICELVNDDGTIKKGKQVIEFSKKY 191
HIFPL+++ GGVLVR GHTEA DL + GL P AVICE++ DDGT+ + + EF+K++
Sbjct: 126 HIFPLMAQPGGVLVRAGHTEAGCDLAALAGLTPAAVICEIMKDDGTMARLPDLEEFAKEH 185
Query: 192 DLKIISVQDLIAWRKKKE 209
LKI ++ DLI +R + E
Sbjct: 186 GLKIGTIADLIHYRSRTE 203
>gnl|CDD|179162 PRK00910, ribB, 3,4-dihydroxy-2-butanone 4-phosphate synthase;
Provisional.
Length = 218
Score = 211 bits (538), Expect = 1e-55
Identities = 89/199 (44%), Positives = 140/199 (70%)
Query: 12 IEDVIQSFQKGEMVIVTDADDRENEADLVLAAIHCTSEKMAFIIRHTCGIVCTPMPFHTA 71
+E+ +Q+ ++G V++ D +DRENE D++ + H T+ +MA +IR GIVC + A
Sbjct: 17 VENALQALREGRGVLLLDDEDRENEGDIIYSVEHLTNAQMALMIRECSGIVCLCLTDAQA 76
Query: 72 HKLKLNPMVLENESVHKTAFTVSVDSKHGITTGISADDRAYTIKNLANPHSIADNFVRPG 131
KL+L PMV+ N S ++TAFTVS+++KHG+TTG+SA DR TIK ANP + ++ RPG
Sbjct: 77 DKLELPPMVVNNNSANQTAFTVSIEAKHGVTTGVSAQDRVTTIKTAANPQAKPEDLARPG 136
Query: 132 HIFPLISRDGGVLVRPGHTEASVDLCKITGLPPIAVICELVNDDGTIKKGKQVIEFSKKY 191
H+FPL +R GGVL R GHTE +VDL ++ GL P V+CEL N DGT+ K ++I F K +
Sbjct: 137 HVFPLRARAGGVLARRGHTEGTVDLMQMAGLQPAGVLCELTNPDGTMAKTPEIIAFGKLH 196
Query: 192 DLKIISVQDLIAWRKKKEI 210
++ +++++D++ +R + ++
Sbjct: 197 NMPVLTIEDMVMYRNQFDL 215
>gnl|CDD|167278 PRK01792, ribB, 3,4-dihydroxy-2-butanone 4-phosphate synthase;
Provisional.
Length = 214
Score = 202 bits (514), Expect = 7e-53
Identities = 89/203 (43%), Positives = 134/203 (66%), Gaps = 1/203 (0%)
Query: 8 DERYIEDVIQSFQKGEMVIVTDADDRENEADLVLAAIHCTSEKMAFIIRHTCGIVCTPMP 67
+ER I I +F++G V+V D +DRENE DL+ A T E+MA +IR+ GIVC +
Sbjct: 13 EERVIN-AINAFKQGNGVLVLDDEDRENEGDLIFPAETITPEQMAKLIRYGSGIVCLCIT 71
Query: 68 FHTAHKLKLNPMVLENESVHKTAFTVSVDSKHGITTGISADDRAYTIKNLANPHSIADNF 127
+L L PMV N SV+KTAFTV++++ G++TG+SA DR TI+ ++ +
Sbjct: 72 DELCQQLDLPPMVQHNTSVNKTAFTVTIEAAKGVSTGVSAADRVTTIQAAIADNAKPSDL 131
Query: 128 VRPGHIFPLISRDGGVLVRPGHTEASVDLCKITGLPPIAVICELVNDDGTIKKGKQVIEF 187
RPGH+FPL + +GGVL R GHTEA+VDL ++ G VICE+ NDDGT+ + +++EF
Sbjct: 132 HRPGHVFPLRAANGGVLTRRGHTEAAVDLARLAGYKEAGVICEITNDDGTMARTPEIVEF 191
Query: 188 SKKYDLKIISVQDLIAWRKKKEI 210
+KK+ +++++DL+ +R K I
Sbjct: 192 AKKFGYAVVTIEDLVEYRLKYNI 214
>gnl|CDD|171535 PRK12485, PRK12485, bifunctional 3,4-dihydroxy-2-butanone
4-phosphate synthase/GTP cyclohydrolase II-like protein;
Provisional.
Length = 369
Score = 200 bits (510), Expect = 2e-52
Identities = 87/198 (43%), Positives = 132/198 (66%)
Query: 12 IEDVIQSFQKGEMVIVTDADDRENEADLVLAAIHCTSEKMAFIIRHTCGIVCTPMPFHTA 71
IE++I+ +++G+MV++ D +DRENE DL+LAA C ++ + F+ R G++C +
Sbjct: 6 IEEIIEDYRQGKMVLLVDDEDRENEGDLLLAAERCDAQAINFMAREARGLICLTLTDEHC 65
Query: 72 HKLKLNPMVLENESVHKTAFTVSVDSKHGITTGISADDRAYTIKNLANPHSIADNFVRPG 131
+L L MV N SV TAFTVS+++ G+TTGISA DRA T+ P++ ++ V+PG
Sbjct: 66 QRLGLEQMVPSNGSVFSTAFTVSIEAATGVTTGISAADRARTVAAAVAPNARPEDLVQPG 125
Query: 132 HIFPLISRDGGVLVRPGHTEASVDLCKITGLPPIAVICELVNDDGTIKKGKQVIEFSKKY 191
HIFPL +R+GGVL R GHTEA DL ++ G P +VI E++NDDGT+ + + F+ K+
Sbjct: 126 HIFPLRAREGGVLTRAGHTEAGCDLARLAGFSPASVIVEVMNDDGTMARRPDLEVFAAKH 185
Query: 192 DLKIISVQDLIAWRKKKE 209
+KI ++ DLI +R E
Sbjct: 186 GIKIGTIADLIHYRLSTE 203
>gnl|CDD|181777 PRK09319, PRK09319, bifunctional 3,4-dihydroxy-2-butanone
4-phosphate synthase/GTP cyclohydrolase II/unknown
domain fusion protein; Provisional.
Length = 555
Score = 197 bits (503), Expect = 2e-51
Identities = 88/200 (44%), Positives = 134/200 (67%), Gaps = 2/200 (1%)
Query: 12 IEDVIQSFQKGEMVIVTDADDRENEADLVLAAIHCTSEKMAFIIRHTCGIVCTPMPFHTA 71
I+D + + + GE V+V D ++RENE DL+ AA T E + F+ G++C M
Sbjct: 8 IDDALAAIRNGECVVVVDDENRENEGDLICAAQFATPEMINFMATEARGLICLAMTGERL 67
Query: 72 HKLKLNPMVLENESVHKTAFTVSVDS--KHGITTGISADDRAYTIKNLANPHSIADNFVR 129
+L L MV N ++TAFTVS+D+ + G++TGISA+DRA TI+ NP + ++ R
Sbjct: 68 DELDLPLMVDRNTDSNQTAFTVSIDAGPELGVSTGISAEDRARTIQVAINPDTKPEDLRR 127
Query: 130 PGHIFPLISRDGGVLVRPGHTEASVDLCKITGLPPIAVICELVNDDGTIKKGKQVIEFSK 189
PGHIFPL +++GGVL R GHTEA+VDL ++ GL P VICE+ N DG++ + ++ E++K
Sbjct: 128 PGHIFPLRAKEGGVLKRAGHTEAAVDLARLAGLYPAGVICEIQNPDGSMARLPELKEYAK 187
Query: 190 KYDLKIISVQDLIAWRKKKE 209
++ LK+IS+ DLI++R + E
Sbjct: 188 QHGLKLISIADLISYRLQNE 207
>gnl|CDD|134031 PRK00014, ribB, 3,4-dihydroxy-2-butanone 4-phosphate synthase;
Provisional.
Length = 230
Score = 180 bits (458), Expect = 2e-46
Identities = 87/192 (45%), Positives = 123/192 (64%)
Query: 12 IEDVIQSFQKGEMVIVTDADDRENEADLVLAAIHCTSEKMAFIIRHTCGIVCTPMPFHTA 71
+E +Q + G VI+ D DRENEADL++AA T MA +IR GIVC +P T
Sbjct: 21 LERALQHLRIGRPVILMDDFDRENEADLIVAADKLTVPVMAQLIRDGSGIVCLCLPGETL 80
Query: 72 HKLKLNPMVLENESVHKTAFTVSVDSKHGITTGISADDRAYTIKNLANPHSIADNFVRPG 131
+L+L PMV N S + TAFTVS++++ G+TTG+SA DR TI+ P + + + V PG
Sbjct: 81 DRLELPPMVDSNRSRYSTAFTVSIEAREGVTTGVSAVDRVTTIRAAIAPGARSGDVVSPG 140
Query: 132 HIFPLISRDGGVLVRPGHTEASVDLCKITGLPPIAVICELVNDDGTIKKGKQVIEFSKKY 191
H+FPL ++ GGVL R GHTE SVDL + GL P V+CEL+N DGT+ +G + ++ K
Sbjct: 141 HVFPLRAQPGGVLTRRGHTEGSVDLAALAGLRPAGVLCELMNADGTMMRGASLERYAAKE 200
Query: 192 DLKIISVQDLIA 203
L +++ +L A
Sbjct: 201 GLVALAIDELAA 212
>gnl|CDD|181776 PRK09318, PRK09318, bifunctional 3,4-dihydroxy-2-butanone
4-phosphate synthase/GTP cyclohydrolase II protein;
Provisional.
Length = 387
Score = 114 bits (288), Expect = 1e-26
Identities = 63/204 (30%), Positives = 109/204 (53%), Gaps = 18/204 (8%)
Query: 12 IEDVIQSFQKGEMVIVTDADDRENEADLVLAAIHCTSEKMAFIIRHTCGIVCTPMPFHTA 71
+E++ ++F +G+ VI+ D +RENEAD V A T E + F + + G++C
Sbjct: 1 MEELREAFLEGKPVILID-RNRENEADFVYPAQIITEEVVNFFLSYGKGLLCLTADEEDL 59
Query: 72 HKLKLNPMVLENESVHKTAFTVSVDSKHGITTGISADDRAYTIKNLANPHSIADNFVRPG 131
K + N +T F + VD +G TGISA +RA T + LA + + F PG
Sbjct: 60 LKRGFFKLP-SNGG--ETNFFIPVD--YGTGTGISASERALTCRKLAEGLYVHE-FRYPG 113
Query: 132 HIFPLISRDGGVLV--RPGHTEASVDLCKITGLPPIAVICELVNDDGTIKKGKQVIEFSK 189
H+ L GG+ R GHTEAS++L ++ G AVI E++++ G V++ ++
Sbjct: 114 HVTLL----GGIGFNRRRGHTEASLELSELLGFKRYAVIVEILDEKGDSHDLDYVLKLAE 169
Query: 190 KYDLKIISVQDLIAWR---KKKEI 210
K+ L ++ + D+ W+ ++K++
Sbjct: 170 KFSLPVLEIDDV--WKEFVRRKQL 191
>gnl|CDD|180250 PRK05773, PRK05773, 3,4-dihydroxy-2-butanone 4-phosphate synthase;
Validated.
Length = 219
Score = 79.3 bits (196), Expect = 7e-16
Identities = 58/218 (26%), Positives = 98/218 (44%), Gaps = 31/218 (14%)
Query: 12 IEDVIQSFQKGEMVIVTDADDRENEADLVLAAIHCTSEKMAFIIRHTCGIVCTPMPFHTA 71
E+ ++ + G V++ D D RE E D+V A T + + + ++ G++C
Sbjct: 3 FEEARKALESGIPVLIYDFDGREEEVDMVFYAGAVTWKSIYTLRKNAGGLICYATSNSEG 62
Query: 72 HKLKLNPMV--LENESVHK-----------TAFTVSVDSKHGIT-TGISADDRAYTIKNL 117
L LN + L+ +++ AF++ V+ H T TGIS DRA TI+ L
Sbjct: 63 KTLGLNFLAEILKRHELYRKLVKKPSYGDEPAFSLWVN--HVKTKTGISDYDRALTIREL 120
Query: 118 ANPHSIA------------DNFVRPGHIFPLISRDGGVLVRPGHTEASVDLCKITGLPPI 165
+A +NF PGH+ LI R R GHTE S+ L + GL P
Sbjct: 121 HKVVELAKTNPEEAREEFYENFYSPGHVPILIGRGIRE--RRGHTELSIALAQAAGLEPS 178
Query: 166 AVICELVNDDGTIKKGKQVIEFSKKYDLKIISVQDLIA 203
AVI E++ D+ ++ + +K ++ +++
Sbjct: 179 AVIAEML-DEKLSLSKEKAKKIAKNLGFPLVEGKEIFK 215
>gnl|CDD|185150 PRK15235, PRK15235, outer membrane fimbrial usher protein SefC;
Provisional.
Length = 814
Score = 30.9 bits (69), Expect = 0.26
Identities = 37/146 (25%), Positives = 57/146 (39%), Gaps = 24/146 (16%)
Query: 84 ESVHKTAFTVSVDSKHGITT----GISADDRAYTIKNLANPHSIADNFVRPGHIFPLISR 139
+S+ TA V G G+ D R YTI + P+ +NF+ I+
Sbjct: 644 QSISDTAALVEAKGVSGAKVLGLPGVRTDFRGYTISSYLTPY--MNNFISIDPTTLPINT 701
Query: 140 D-----------GGVLVRPGH-----TEASVDLCKITGLP-PIAVICELVNDDGTIKKGK 182
D G +V+ + T A + + + G P + + L N+DG I+
Sbjct: 702 DIRQTDIQVVPTEGAIVKAVYKTSVGTNALIRITRTNGKPLALGTVLSLKNNDGVIQSTS 761
Query: 183 QVIEFSKKYDLKIISVQDLIA-WRKK 207
V E + Y + VQ LIA W K
Sbjct: 762 IVGEDGQAYVSGLSGVQKLIASWGNK 787
>gnl|CDD|151063 pfam10504, DUF2452, Protein of unknown function (DUF2452). This
protein is found in eukaryotes but its function is
unknown.
Length = 160
Score = 29.0 bits (65), Expect = 1.0
Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Query: 118 ANPHSIADNFV-RPGHIFPLISRDGG 142
A+ H A NFV +PG+I+ L R G
Sbjct: 79 ADLHHAACNFVKKPGNIYHLYKRPSG 104
>gnl|CDD|181082 PRK07682, PRK07682, hypothetical protein; Validated.
Length = 378
Score = 26.6 bits (59), Expect = 5.1
Identities = 17/74 (22%), Positives = 31/74 (41%), Gaps = 12/74 (16%)
Query: 135 PLISRDGGVLVRPGHTEASVDL--------CKITGLPPIAVICELVNDDGTI---KKGKQ 183
PL++ GGV V P T + IT ++C N G + + ++
Sbjct: 120 PLVTLAGGVPV-PVATTLENEFKVQPAQIEAAITAKTKAILLCSPNNPTGAVLNKSELEE 178
Query: 184 VIEFSKKYDLKIIS 197
+ +K+DL ++S
Sbjct: 179 IAVIVEKHDLIVLS 192
>gnl|CDD|183625 PRK12617, flgA, flagellar basal body P-ring biosynthesis protein
FlgA; Reviewed.
Length = 214
Score = 26.4 bits (58), Expect = 5.2
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 117 LANPHSIADNFVRPGHIFPLISRDGGVLVR 146
L+ ++ VR G PL+SR+GG+ VR
Sbjct: 145 LSANDLVSQRLVRRGDTVPLVSRNGGLEVR 174
>gnl|CDD|169656 PRK09099, PRK09099, type III secretion system ATPase; Provisional.
Length = 441
Score = 26.3 bits (58), Expect = 5.6
Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 9/76 (11%)
Query: 123 IADNFVRPGHIFPLISRDGGVLVRPGHTEASVDLCKITGLP-PIAVICELVNDDGTIKKG 181
+AD R P + R G V+ E L +++GL + +CEL DGT+ +
Sbjct: 8 LADALERELAALPAVRRTGKVV------EVIGTLLRVSGLDVTLGELCELRQRDGTLLQR 61
Query: 182 KQVIEFSKKYDLKIIS 197
+V+ FS+ D+ ++S
Sbjct: 62 AEVVGFSR--DVALLS 75
>gnl|CDD|178187 PLN02575, PLN02575, haloacid dehalogenase-like hydrolase.
Length = 381
Score = 26.4 bits (58), Expect = 5.8
Identities = 17/39 (43%), Positives = 21/39 (53%)
Query: 23 EMVIVTDADDRENEADLVLAAIHCTSEKMAFIIRHTCGI 61
E VI+ D D EN+A L LA S AFI+R G+
Sbjct: 139 EGVIIEDNPDLENQAWLTLAQEEGKSPPPAFILRRVEGM 177
>gnl|CDD|180665 PRK06707, PRK06707, amidase; Provisional.
Length = 536
Score = 26.4 bits (58), Expect = 6.3
Identities = 7/21 (33%), Positives = 17/21 (80%)
Query: 187 FSKKYDLKIISVQDLIAWRKK 207
FS++ ++ + S++++IA+ KK
Sbjct: 398 FSQQKNVPVKSLEEIIAFNKK 418
>gnl|CDD|178996 PRK00390, leuS, leucyl-tRNA synthetase; Validated.
Length = 805
Score = 25.8 bits (58), Expect = 7.7
Identities = 8/13 (61%), Positives = 9/13 (69%)
Query: 186 EFSKKYDLKIISV 198
EF+KKY L I V
Sbjct: 346 EFAKKYGLPIKPV 358
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.320 0.136 0.398
Gapped
Lambda K H
0.267 0.0728 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 3,369,012
Number of extensions: 205322
Number of successful extensions: 459
Number of sequences better than 10.0: 1
Number of HSP's gapped: 447
Number of HSP's successfully gapped: 28
Length of query: 210
Length of database: 5,994,473
Length adjustment: 89
Effective length of query: 121
Effective length of database: 4,071,361
Effective search space: 492634681
Effective search space used: 492634681
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.0 bits)