RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|254780359|ref|YP_003064772.1| GTP cyclohydrolase II protein (riboflavin biosynthesis) [Candidatus Liberibacter asiaticus str. psy62] (210 letters) >1g57_A DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavine biosynthesis, skeletal rearrangement, antimicrobial target; 1.40A {Escherichia coli} (A:) Length = 217 Score = 259 bits (663), Expect = 2e-70 Identities = 81/198 (40%), Positives = 127/198 (64%) Query: 12 IEDVIQSFQKGEMVIVTDADDRENEADLVLAAIHCTSEKMAFIIRHTCGIVCTPMPFHTA 71 +E+ + + ++G V+V D +DRENE D++ A T E+MA IRH GIVC + Sbjct: 16 VENALAALREGRGVMVLDDEDRENEGDMIFPAETMTVEQMALTIRHGSGIVCLCITEDRR 75 Query: 72 HKLKLNPMVLENESVHKTAFTVSVDSKHGITTGISADDRAYTIKNLANPHSIADNFVRPG 131 +L L MV N S + T FTV++++ G+TTG+SA DR T++ + + RPG Sbjct: 76 KQLDLPMMVENNTSAYGTGFTVTIEAAEGVTTGVSAADRITTVRAAIADGAKPSDLNRPG 135 Query: 132 HIFPLISRDGGVLVRPGHTEASVDLCKITGLPPIAVICELVNDDGTIKKGKQVIEFSKKY 191 H+FPL ++ GGVL R GHTEA++DL + G P V+CEL NDDGT+ + + IEF+ K+ Sbjct: 136 HVFPLRAQAGGVLTRGGHTEATIDLMTLAGFKPAGVLCELTNDDGTMARAPECIEFANKH 195 Query: 192 DLKIISVQDLIAWRKKKE 209 ++ +++++DL+A+R+ E Sbjct: 196 NMALVTIEDLVAYRQAHE 213 >1tks_A 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin biosynthesis, synthetic gene, isomerase; 1.60A {Candida albicans SC5314} (A:) Length = 204 Score = 258 bits (660), Expect = 4e-70 Identities = 89/197 (45%), Positives = 132/197 (67%), Gaps = 1/197 (0%) Query: 12 IEDVIQSFQKGEMVIVTDADDRENEADLVLAAIHCTSEKMAFIIRHTCGIVCTPMPFHTA 71 IE+ +++++ GE +IV D +DRENE DL++AA T EKMAF++R++ G VC P+ A Sbjct: 8 IEEALEAYKNGEFLIVMDDEDRENEGDLIMAAELITQEKMAFLVRYSSGYVCVPLSEERA 67 Query: 72 HKLKLNPMVLENESVHKTAFTVSVDSKHGITTGISADDRAYTIKNLANPHSIADNFVRPG 131 ++L+L PM+ H TA+T++ D G TTGISA DRA T ++LANP+S +F++PG Sbjct: 68 NQLELPPMLANRSDRHGTAYTITCDFAEGTTTGISAHDRALTTRSLANPNSKPQDFIKPG 127 Query: 132 HIFPLISRDGGVLVRPGHTEASVDLCKITGLPPIAVICELV-NDDGTIKKGKQVIEFSKK 190 HI PL + G + R GHTEA+V L + GL P VICELV ++DG + + I+F KK Sbjct: 128 HILPLRAVPGLLKKRRGHTEAAVQLSTLAGLQPAGVICELVRDEDGLMMRLDDCIQFGKK 187 Query: 191 YDLKIISVQDLIAWRKK 207 + +KII++ L+ + K Sbjct: 188 HGIKIININQLVEYISK 204 >1k4i_A 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin biosynthesis, antimicrobial target, structure-based design, isomerase; 0.98A {Magnaporthe grisea} (A:) Length = 233 Score = 257 bits (658), Expect = 7e-70 Identities = 92/210 (43%), Positives = 133/210 (63%), Gaps = 12/210 (5%) Query: 12 IEDVIQSFQKGEMVIVTDADDRENEADLVLAAIHCTSEKMAFIIRHTCGIVCTPMPFHTA 71 I DVIQ+F+ GE V+V D RENEADL++AA T+E+MAF++RH+ G++C P+ Sbjct: 15 IPDVIQAFKNGEFVVVLDDPSRENEADLIIAAESVTTEQMAFMVRHSSGLICAPLTPERT 74 Query: 72 HKLKLNPMVLENESVHKTAFTVSVDSKH-GITTGISADDRAYTIKNLANPHSIADNFVRP 130 L L MV N TA+TVSVD++H TTGISA DRA + LA P + +F RP Sbjct: 75 TALDLPQMVTHNADPRGTAYTVSVDAEHPSTTTGISAHDRALACRMLAAPDAQPSHFRRP 134 Query: 131 GHIFPLISRDGGVLVRPGHTEASVDLCKITGLPPIAVICELVNDDGT-----------IK 179 GH+FPL + GGV R GHTEA V+LC++ G P+AVI E+V+D + Sbjct: 135 GHVFPLRAVAGGVRARRGHTEAGVELCRLAGKRPVAVISEIVDDGQEVEGRAVRAAPGML 194 Query: 180 KGKQVIEFSKKYDLKIISVQDLIAWRKKKE 209 +G + + F++++ LK+ +++D+IA +K E Sbjct: 195 RGDECVAFARRWGLKVCTIEDMIAHVEKTE 224 >1snn_A DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin biosynthesis, isomerase; HET: 5RP; 1.55A {Methanocaldococcus jannaschii} (A:) Length = 227 Score = 250 bits (641), Expect = 7e-68 Identities = 63/223 (28%), Positives = 116/223 (52%), Gaps = 25/223 (11%) Query: 12 IEDVIQSFQKGEMVIVTDADDRENEADLVLAAIHCTSEKMAFIIRHTCGIVCTPMPFHTA 71 +E I++ +KGE+++V D+D+RE E D+V+A+ T E + + + G++CT + Sbjct: 4 VEKAIEALKKGEIILVYDSDEREGETDMVVASQFITPEHIRIMRKDAGGLICTALHPDIC 63 Query: 72 HKLKLNPMV------------------LENESVHKTAFTVSVDSKHGITTGISADDRAYT 113 +KL + MV + K++F+++++ + TGI+ +DRA+T Sbjct: 64 NKLGIPFMVDILEFASQKFKVLRELYPNDIPYDEKSSFSITINHR-KTFTGITDNDRAFT 122 Query: 114 IKNLAN------PHSIADNFVRPGHIFPLISRDGGVLVRPGHTEASVDLCKITGLPPIAV 167 IK LA + F PG + L + +G V R GHTE +V L ++ L PI Sbjct: 123 IKKLAELVKEGRFNDFGKEFRSPGSVTLLRAAEGLVKNRQGHTEMTVALAELANLVPITT 182 Query: 168 ICELVNDDGTIKKGKQVIEFSKKYDLKIISVQDLIAWRKKKEI 210 ICE++ DDG + +++K++L +S +++I + K + Sbjct: 183 ICEMMGDDGNAMSKNETKRYAEKHNLIYLSGEEIINYYLDKYL 225 >1wny_A Isoleucyl-tRNA synthetase; ligase, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Thermus thermophilus} PDB: 1wnz_A* 1wk8_A* 1udz_A 1ue0_A (A:) Length = 186 Score = 28.6 bits (63), Expect = 0.71 Identities = 10/74 (13%), Positives = 27/74 (36%), Gaps = 10/74 (13%) Query: 123 IADNFVRPGHIFPLISRDGGVLVRPGHTEASVDLCKITGLPPIAVICELVNDDGTIKKGK 182 + ++V G V P ++ ++ GLP + V+++G + Sbjct: 105 VLADYVSQE------DGTGIVHQAPAFGAEDLETARVYGLPLLKT----VDEEGKLLVEP 154 Query: 183 QVIEFSKKYDLKII 196 + ++ + I+ Sbjct: 155 FKGLYFREANRAIL 168 >2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune system, antibody, ENA11His antibody, immunoglobulin domain; 2.75A {Mus musculus} (A:1-150) Length = 150 Score = 27.9 bits (61), Expect = 1.0 Identities = 12/22 (54%), Positives = 13/22 (59%), Gaps = 4/22 (18%) Query: 141 GGVLVRPGHTEASVDL-CKITG 161 G LVRPG SV L CK +G Sbjct: 7 GAELVRPG---TSVKLSCKASG 25 >2qdx_A Ferredoxin reductase; oxidoreductase; HET: FAD; 1.55A {Pseudomonas aeruginosa} PDB: 3crz_A* 1a8p_A* (A:100-257) Length = 158 Score = 27.1 bits (59), Expect = 1.6 Identities = 7/75 (9%), Positives = 14/75 (18%), Gaps = 8/75 (10%) Query: 22 GEMVIVTDADDRENEADLVLAAIHCTSEKMAFIIRHTCGIVCTPMPFHTAHKLKLNPMVL 81 TD + + + A I C L+ L Sbjct: 86 RNQGRQTDLMRSGKLFEDIGLPPMNPQDDRAMI--------CGSPSMLEETSAVLDSFGL 137 Query: 82 ENESVHKTAFTVSVD 96 + ++ Sbjct: 138 KISPRMGEPGDYLIE 152 >1hxs_1 Genome polyprotein, coat protein VP1; picornavirus, AB initio phase determinaion, icosahedral virus; HET: MYR PLM; 2.20A {Human poliovirus 1 mahoney} (1:76-302) Length = 227 Score = 27.2 bits (60), Expect = 1.8 Identities = 7/34 (20%), Positives = 14/34 (41%) Query: 176 GTIKKGKQVIEFSKKYDLKIISVQDLIAWRKKKE 209 T+ K + + I+ +D + R+K E Sbjct: 15 MTVDNPASTTNKDKLFAVWKITYKDTVQLRRKLE 48 >3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2, NYSGXRC, 11136F, structural genomics, protein structure initiative; 2.04A {Klebsiella pneumoniae subsp} (A:1-127) Length = 127 Score = 26.9 bits (59), Expect = 2.0 Identities = 9/63 (14%), Positives = 21/63 (33%) Query: 10 RYIEDVIQSFQKGEMVIVTDADDRENEADLVLAAIHCTSEKMAFIIRHTCGIVCTPMPFH 69 + +I+S + V D+ + + DL + + E ++ +P H Sbjct: 21 TFHAPLIRSVPGLNLAFVASRDEEKVKRDLPDVTVIASPEAAVQHPDVDLVVIASPNATH 80 Query: 70 TAH 72 Sbjct: 81 APL 83 >2cqs_A Cellobiose phosphorylase; beta-sandwich, (alpha/alpha)6 barrel, transferase; HET: BGC; 2.00A {Cellvibrio gilvus} PDB: 2cqt_A* (A:371-381,A:503-524,A:629-751) Length = 156 Score = 26.2 bits (58), Expect = 3.1 Identities = 9/29 (31%), Positives = 16/29 (55%) Query: 136 LISRDGGVLVRPGHTEASVDLCKITGLPP 164 L + G VL P +T ++L +++ PP Sbjct: 52 LGTPHGLVLQYPAYTTYQIELGEVSTYPP 80 >1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} (A:122-242) Length = 121 Score = 26.5 bits (58), Expect = 3.2 Identities = 7/29 (24%), Positives = 14/29 (48%) Query: 16 IQSFQKGEMVIVTDADDRENEADLVLAAI 44 ++ ++ V D +ADLV+ A+ Sbjct: 93 VERYEGDGRVQKVVTDKNAYDADLVVVAV 121 >2bh1_X General secretion pathway protein E,; transport protein, type II secretion, EPS, GSP, transmembrane, transport, ATP-binding; 2.4A {Vibrio cholerae} (X:) Length = 96 Score = 26.3 bits (58), Expect = 3.3 Identities = 6/49 (12%), Positives = 13/49 (26%), Gaps = 4/49 (8%) Query: 126 NFVRPGHIFPLISRDGGVLV----RPGHTEASVDLCKITGLPPIAVICE 170 +F + + D P EA V+ ++ + Sbjct: 20 SFANRFKLVLDWNEDFSQASIYYLAPLSMEALVETKRVVKHAFQLIELS 68 >2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} (A:1-70) Length = 70 Score = 25.4 bits (56), Expect = 5.7 Identities = 4/23 (17%), Positives = 9/23 (39%) Query: 12 IEDVIQSFQKGEMVIVTDADDRE 34 + V + G++V V + Sbjct: 26 VVRVEGDIKPGDIVEVYTRGGKF 48 >2hnh_A DNA polymerase III alpha subunit; DNA replication, nucleotidyltransferase, POL beta, PHP; HET: DNA; 2.30A {Escherichia coli} PDB: 2hqa_A* (A:390-432,A:511-559) Length = 92 Score = 24.9 bits (55), Expect = 8.4 Identities = 6/20 (30%), Positives = 10/20 (50%) Query: 48 SEKMAFIIRHTCGIVCTPMP 67 + ++ II H G+V P Sbjct: 35 RDAVSQIITHAGGVVIAPTK 54 >3cgb_A Pyridine nucleotide-disulfide oxidoreductase, class I; coenzyme A, flavin adenine dinucleotide, selenomethionine, FAD, flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A* (A:159-278) Length = 120 Score = 24.8 bits (54), Expect = 9.7 Identities = 9/29 (31%), Positives = 17/29 (58%) Query: 16 IQSFQKGEMVIVTDADDRENEADLVLAAI 44 +++F+ E V + D +ADLVL ++ Sbjct: 92 VKAFKGNERVEAVETDKGTYKADLVLVSV 120 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.320 0.136 0.398 Gapped Lambda K H 0.267 0.0593 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 1,593,213 Number of extensions: 70038 Number of successful extensions: 461 Number of sequences better than 10.0: 1 Number of HSP's gapped: 455 Number of HSP's successfully gapped: 41 Length of query: 210 Length of database: 4,956,049 Length adjustment: 85 Effective length of query: 125 Effective length of database: 2,082,624 Effective search space: 260328000 Effective search space used: 260328000 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 52 (24.1 bits)