RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254780359|ref|YP_003064772.1| GTP cyclohydrolase II protein
(riboflavin biosynthesis) [Candidatus Liberibacter asiaticus str.
psy62]
         (210 letters)



>1g57_A DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphate
           synthase; riboflavine biosynthesis, skeletal
           rearrangement, antimicrobial target; 1.40A {Escherichia
           coli} (A:)
          Length = 217

 Score =  259 bits (663), Expect = 2e-70
 Identities = 81/198 (40%), Positives = 127/198 (64%)

Query: 12  IEDVIQSFQKGEMVIVTDADDRENEADLVLAAIHCTSEKMAFIIRHTCGIVCTPMPFHTA 71
           +E+ + + ++G  V+V D +DRENE D++  A   T E+MA  IRH  GIVC  +     
Sbjct: 16  VENALAALREGRGVMVLDDEDRENEGDMIFPAETMTVEQMALTIRHGSGIVCLCITEDRR 75

Query: 72  HKLKLNPMVLENESVHKTAFTVSVDSKHGITTGISADDRAYTIKNLANPHSIADNFVRPG 131
            +L L  MV  N S + T FTV++++  G+TTG+SA DR  T++      +   +  RPG
Sbjct: 76  KQLDLPMMVENNTSAYGTGFTVTIEAAEGVTTGVSAADRITTVRAAIADGAKPSDLNRPG 135

Query: 132 HIFPLISRDGGVLVRPGHTEASVDLCKITGLPPIAVICELVNDDGTIKKGKQVIEFSKKY 191
           H+FPL ++ GGVL R GHTEA++DL  + G  P  V+CEL NDDGT+ +  + IEF+ K+
Sbjct: 136 HVFPLRAQAGGVLTRGGHTEATIDLMTLAGFKPAGVLCELTNDDGTMARAPECIEFANKH 195

Query: 192 DLKIISVQDLIAWRKKKE 209
           ++ +++++DL+A+R+  E
Sbjct: 196 NMALVTIEDLVAYRQAHE 213


>1tks_A 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin
           biosynthesis, synthetic gene, isomerase; 1.60A {Candida
           albicans SC5314} (A:)
          Length = 204

 Score =  258 bits (660), Expect = 4e-70
 Identities = 89/197 (45%), Positives = 132/197 (67%), Gaps = 1/197 (0%)

Query: 12  IEDVIQSFQKGEMVIVTDADDRENEADLVLAAIHCTSEKMAFIIRHTCGIVCTPMPFHTA 71
           IE+ +++++ GE +IV D +DRENE DL++AA   T EKMAF++R++ G VC P+    A
Sbjct: 8   IEEALEAYKNGEFLIVMDDEDRENEGDLIMAAELITQEKMAFLVRYSSGYVCVPLSEERA 67

Query: 72  HKLKLNPMVLENESVHKTAFTVSVDSKHGITTGISADDRAYTIKNLANPHSIADNFVRPG 131
           ++L+L PM+      H TA+T++ D   G TTGISA DRA T ++LANP+S   +F++PG
Sbjct: 68  NQLELPPMLANRSDRHGTAYTITCDFAEGTTTGISAHDRALTTRSLANPNSKPQDFIKPG 127

Query: 132 HIFPLISRDGGVLVRPGHTEASVDLCKITGLPPIAVICELV-NDDGTIKKGKQVIEFSKK 190
           HI PL +  G +  R GHTEA+V L  + GL P  VICELV ++DG + +    I+F KK
Sbjct: 128 HILPLRAVPGLLKKRRGHTEAAVQLSTLAGLQPAGVICELVRDEDGLMMRLDDCIQFGKK 187

Query: 191 YDLKIISVQDLIAWRKK 207
           + +KII++  L+ +  K
Sbjct: 188 HGIKIININQLVEYISK 204


>1k4i_A 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin
           biosynthesis, antimicrobial target, structure-based
           design, isomerase; 0.98A {Magnaporthe grisea} (A:)
          Length = 233

 Score =  257 bits (658), Expect = 7e-70
 Identities = 92/210 (43%), Positives = 133/210 (63%), Gaps = 12/210 (5%)

Query: 12  IEDVIQSFQKGEMVIVTDADDRENEADLVLAAIHCTSEKMAFIIRHTCGIVCTPMPFHTA 71
           I DVIQ+F+ GE V+V D   RENEADL++AA   T+E+MAF++RH+ G++C P+     
Sbjct: 15  IPDVIQAFKNGEFVVVLDDPSRENEADLIIAAESVTTEQMAFMVRHSSGLICAPLTPERT 74

Query: 72  HKLKLNPMVLENESVHKTAFTVSVDSKH-GITTGISADDRAYTIKNLANPHSIADNFVRP 130
             L L  MV  N     TA+TVSVD++H   TTGISA DRA   + LA P +   +F RP
Sbjct: 75  TALDLPQMVTHNADPRGTAYTVSVDAEHPSTTTGISAHDRALACRMLAAPDAQPSHFRRP 134

Query: 131 GHIFPLISRDGGVLVRPGHTEASVDLCKITGLPPIAVICELVNDDGT-----------IK 179
           GH+FPL +  GGV  R GHTEA V+LC++ G  P+AVI E+V+D              + 
Sbjct: 135 GHVFPLRAVAGGVRARRGHTEAGVELCRLAGKRPVAVISEIVDDGQEVEGRAVRAAPGML 194

Query: 180 KGKQVIEFSKKYDLKIISVQDLIAWRKKKE 209
           +G + + F++++ LK+ +++D+IA  +K E
Sbjct: 195 RGDECVAFARRWGLKVCTIEDMIAHVEKTE 224


>1snn_A DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphate
           synthase; riboflavin biosynthesis, isomerase; HET: 5RP;
           1.55A {Methanocaldococcus jannaschii} (A:)
          Length = 227

 Score =  250 bits (641), Expect = 7e-68
 Identities = 63/223 (28%), Positives = 116/223 (52%), Gaps = 25/223 (11%)

Query: 12  IEDVIQSFQKGEMVIVTDADDRENEADLVLAAIHCTSEKMAFIIRHTCGIVCTPMPFHTA 71
           +E  I++ +KGE+++V D+D+RE E D+V+A+   T E +  + +   G++CT +     
Sbjct: 4   VEKAIEALKKGEIILVYDSDEREGETDMVVASQFITPEHIRIMRKDAGGLICTALHPDIC 63

Query: 72  HKLKLNPMV------------------LENESVHKTAFTVSVDSKHGITTGISADDRAYT 113
           +KL +  MV                   +     K++F+++++ +    TGI+ +DRA+T
Sbjct: 64  NKLGIPFMVDILEFASQKFKVLRELYPNDIPYDEKSSFSITINHR-KTFTGITDNDRAFT 122

Query: 114 IKNLAN------PHSIADNFVRPGHIFPLISRDGGVLVRPGHTEASVDLCKITGLPPIAV 167
           IK LA        +     F  PG +  L + +G V  R GHTE +V L ++  L PI  
Sbjct: 123 IKKLAELVKEGRFNDFGKEFRSPGSVTLLRAAEGLVKNRQGHTEMTVALAELANLVPITT 182

Query: 168 ICELVNDDGTIKKGKQVIEFSKKYDLKIISVQDLIAWRKKKEI 210
           ICE++ DDG      +   +++K++L  +S +++I +   K +
Sbjct: 183 ICEMMGDDGNAMSKNETKRYAEKHNLIYLSGEEIINYYLDKYL 225


>1wny_A Isoleucyl-tRNA synthetase; ligase, structural genomics,
           NPPSFA, national project on protein structural and
           functional analyses; 1.60A {Thermus thermophilus} PDB:
           1wnz_A* 1wk8_A* 1udz_A 1ue0_A (A:)
          Length = 186

 Score = 28.6 bits (63), Expect = 0.71
 Identities = 10/74 (13%), Positives = 27/74 (36%), Gaps = 10/74 (13%)

Query: 123 IADNFVRPGHIFPLISRDGGVLVRPGHTEASVDLCKITGLPPIAVICELVNDDGTIKKGK 182
           +  ++V            G V   P      ++  ++ GLP +      V+++G +    
Sbjct: 105 VLADYVSQE------DGTGIVHQAPAFGAEDLETARVYGLPLLKT----VDEEGKLLVEP 154

Query: 183 QVIEFSKKYDLKII 196
               + ++ +  I+
Sbjct: 155 FKGLYFREANRAIL 168


>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole,
           immune system, antibody, ENA11His antibody,
           immunoglobulin domain; 2.75A {Mus musculus} (A:1-150)
          Length = 150

 Score = 27.9 bits (61), Expect = 1.0
 Identities = 12/22 (54%), Positives = 13/22 (59%), Gaps = 4/22 (18%)

Query: 141 GGVLVRPGHTEASVDL-CKITG 161
           G  LVRPG    SV L CK +G
Sbjct: 7   GAELVRPG---TSVKLSCKASG 25


>2qdx_A Ferredoxin reductase; oxidoreductase; HET: FAD; 1.55A
           {Pseudomonas aeruginosa} PDB: 3crz_A* 1a8p_A*
           (A:100-257)
          Length = 158

 Score = 27.1 bits (59), Expect = 1.6
 Identities = 7/75 (9%), Positives = 14/75 (18%), Gaps = 8/75 (10%)

Query: 22  GEMVIVTDADDRENEADLVLAAIHCTSEKMAFIIRHTCGIVCTPMPFHTAHKLKLNPMVL 81
                 TD        + +        +  A I        C            L+   L
Sbjct: 86  RNQGRQTDLMRSGKLFEDIGLPPMNPQDDRAMI--------CGSPSMLEETSAVLDSFGL 137

Query: 82  ENESVHKTAFTVSVD 96
           +            ++
Sbjct: 138 KISPRMGEPGDYLIE 152


>1hxs_1 Genome polyprotein, coat protein VP1; picornavirus, AB
           initio phase determinaion, icosahedral virus; HET: MYR
           PLM; 2.20A {Human poliovirus 1 mahoney} (1:76-302)
          Length = 227

 Score = 27.2 bits (60), Expect = 1.8
 Identities = 7/34 (20%), Positives = 14/34 (41%)

Query: 176 GTIKKGKQVIEFSKKYDLKIISVQDLIAWRKKKE 209
            T+          K + +  I+ +D +  R+K E
Sbjct: 15  MTVDNPASTTNKDKLFAVWKITYKDTVQLRRKLE 48


>3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2,
          NYSGXRC, 11136F, structural genomics, protein structure
          initiative; 2.04A {Klebsiella pneumoniae subsp}
          (A:1-127)
          Length = 127

 Score = 26.9 bits (59), Expect = 2.0
 Identities = 9/63 (14%), Positives = 21/63 (33%)

Query: 10 RYIEDVIQSFQKGEMVIVTDADDRENEADLVLAAIHCTSEKMAFIIRHTCGIVCTPMPFH 69
           +   +I+S     +  V   D+ + + DL    +  + E           ++ +P   H
Sbjct: 21 TFHAPLIRSVPGLNLAFVASRDEEKVKRDLPDVTVIASPEAAVQHPDVDLVVIASPNATH 80

Query: 70 TAH 72
             
Sbjct: 81 APL 83


>2cqs_A Cellobiose phosphorylase; beta-sandwich, (alpha/alpha)6
           barrel, transferase; HET: BGC; 2.00A {Cellvibrio gilvus}
           PDB: 2cqt_A* (A:371-381,A:503-524,A:629-751)
          Length = 156

 Score = 26.2 bits (58), Expect = 3.1
 Identities = 9/29 (31%), Positives = 16/29 (55%)

Query: 136 LISRDGGVLVRPGHTEASVDLCKITGLPP 164
           L +  G VL  P +T   ++L +++  PP
Sbjct: 52  LGTPHGLVLQYPAYTTYQIELGEVSTYPP 80


>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A
           {Enterococcus faecalis} (A:122-242)
          Length = 121

 Score = 26.5 bits (58), Expect = 3.2
 Identities = 7/29 (24%), Positives = 14/29 (48%)

Query: 16  IQSFQKGEMVIVTDADDRENEADLVLAAI 44
           ++ ++    V     D    +ADLV+ A+
Sbjct: 93  VERYEGDGRVQKVVTDKNAYDADLVVVAV 121


>2bh1_X General secretion pathway protein E,; transport protein,
           type II secretion, EPS, GSP, transmembrane, transport,
           ATP-binding; 2.4A {Vibrio cholerae} (X:)
          Length = 96

 Score = 26.3 bits (58), Expect = 3.3
 Identities = 6/49 (12%), Positives = 13/49 (26%), Gaps = 4/49 (8%)

Query: 126 NFVRPGHIFPLISRDGGVLV----RPGHTEASVDLCKITGLPPIAVICE 170
           +F     +    + D          P   EA V+  ++       +   
Sbjct: 20  SFANRFKLVLDWNEDFSQASIYYLAPLSMEALVETKRVVKHAFQLIELS 68


>2as0_A Hypothetical protein PH1915; RNA methyltransferase,
          structural genomics, PSI, protein structure initiative;
          1.80A {Pyrococcus horikoshii} (A:1-70)
          Length = 70

 Score = 25.4 bits (56), Expect = 5.7
 Identities = 4/23 (17%), Positives = 9/23 (39%)

Query: 12 IEDVIQSFQKGEMVIVTDADDRE 34
          +  V    + G++V V     + 
Sbjct: 26 VVRVEGDIKPGDIVEVYTRGGKF 48


>2hnh_A DNA polymerase III alpha subunit; DNA replication,
          nucleotidyltransferase, POL beta, PHP; HET: DNA; 2.30A
          {Escherichia coli} PDB: 2hqa_A* (A:390-432,A:511-559)
          Length = 92

 Score = 24.9 bits (55), Expect = 8.4
 Identities = 6/20 (30%), Positives = 10/20 (50%)

Query: 48 SEKMAFIIRHTCGIVCTPMP 67
           + ++ II H  G+V  P  
Sbjct: 35 RDAVSQIITHAGGVVIAPTK 54


>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, class I;
           coenzyme A, flavin adenine dinucleotide,
           selenomethionine, FAD, flavoprotein; HET: COA FAD; 1.90A
           {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*
           (A:159-278)
          Length = 120

 Score = 24.8 bits (54), Expect = 9.7
 Identities = 9/29 (31%), Positives = 17/29 (58%)

Query: 16  IQSFQKGEMVIVTDADDRENEADLVLAAI 44
           +++F+  E V   + D    +ADLVL ++
Sbjct: 92  VKAFKGNERVEAVETDKGTYKADLVLVSV 120


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.320    0.136    0.398 

Gapped
Lambda     K      H
   0.267   0.0593    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 1,593,213
Number of extensions: 70038
Number of successful extensions: 461
Number of sequences better than 10.0: 1
Number of HSP's gapped: 455
Number of HSP's successfully gapped: 41
Length of query: 210
Length of database: 4,956,049
Length adjustment: 85
Effective length of query: 125
Effective length of database: 2,082,624
Effective search space: 260328000
Effective search space used: 260328000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.1 bits)