RPS-BLAST 2.2.22 [Sep-27-2009]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= gi|254780359|ref|YP_003064772.1| GTP cyclohydrolase II protein
(riboflavin biosynthesis) [Candidatus Liberibacter asiaticus str.
psy62]
(210 letters)
>d1snna_ d.115.1.2 (A:) 3,4-dihydroxy-2-butanone 4-phosphate
synthase, DHBP synthase, RibB {Archaeon
Methanocaldococcus jannaschii [TaxId: 2190]}
Length = 219
Score = 209 bits (534), Expect = 1e-55
Identities = 63/217 (29%), Positives = 114/217 (52%), Gaps = 25/217 (11%)
Query: 12 IEDVIQSFQKGEMVIVTDADDRENEADLVLAAIHCTSEKMAFIIRHTCGIVCTPMPFHTA 71
+E I++ +KGE+++V D+D+RE E D+V+A+ T E + + + G++CT +
Sbjct: 3 VEKAIEALKKGEIILVYDSDEREGETDMVVASQFITPEHIRIMRKDAGGLICTALHPDIC 62
Query: 72 HKLKLNPMVLENESV------------------HKTAFTVSVDSKHGITTGISADDRAYT 113
+KL + MV E K++F+++++ + TGI+ +DRA+T
Sbjct: 63 NKLGIPFMVDILEFASQKFKVLRELYPNDIPYDEKSSFSITINHRKT-FTGITDNDRAFT 121
Query: 114 IKNLAN------PHSIADNFVRPGHIFPLISRDGGVLVRPGHTEASVDLCKITGLPPIAV 167
IK LA + F PG + L + +G V R GHTE +V L ++ L PI
Sbjct: 122 IKKLAELVKEGRFNDFGKEFRSPGSVTLLRAAEGLVKNRQGHTEMTVALAELANLVPITT 181
Query: 168 ICELVNDDGTIKKGKQVIEFSKKYDLKIISVQDLIAW 204
ICE++ DDG + +++K++L +S +++I +
Sbjct: 182 ICEMMGDDGNAMSKNETKRYAEKHNLIYLSGEEIINY 218
>d1g57a_ d.115.1.2 (A:) 3,4-dihydroxy-2-butanone 4-phosphate
synthase, DHBP synthase, RibB {Escherichia coli [TaxId:
562]}
Length = 209
Score = 204 bits (521), Expect = 4e-54
Identities = 81/198 (40%), Positives = 127/198 (64%)
Query: 12 IEDVIQSFQKGEMVIVTDADDRENEADLVLAAIHCTSEKMAFIIRHTCGIVCTPMPFHTA 71
+E+ + + ++G V+V D +DRENE D++ A T E+MA IRH GIVC +
Sbjct: 12 VENALAALREGRGVMVLDDEDRENEGDMIFPAETMTVEQMALTIRHGSGIVCLCITEDRR 71
Query: 72 HKLKLNPMVLENESVHKTAFTVSVDSKHGITTGISADDRAYTIKNLANPHSIADNFVRPG 131
+L L MV N S + T FTV++++ G+TTG+SA DR T++ + + RPG
Sbjct: 72 KQLDLPMMVENNTSAYGTGFTVTIEAAEGVTTGVSAADRITTVRAAIADGAKPSDLNRPG 131
Query: 132 HIFPLISRDGGVLVRPGHTEASVDLCKITGLPPIAVICELVNDDGTIKKGKQVIEFSKKY 191
H+FPL ++ GGVL R GHTEA++DL + G P V+CEL NDDGT+ + + IEF+ K+
Sbjct: 132 HVFPLRAQAGGVLTRGGHTEATIDLMTLAGFKPAGVLCELTNDDGTMARAPECIEFANKH 191
Query: 192 DLKIISVQDLIAWRKKKE 209
++ +++++DL+A+R+ E
Sbjct: 192 NMALVTIEDLVAYRQAHE 209
>d1k4ia_ d.115.1.2 (A:) 3,4-dihydroxy-2-butanone 4-phosphate
synthase, DHBP synthase, RibB {Magnaporthe grisea
[TaxId: 148305]}
Length = 216
Score = 200 bits (509), Expect = 8e-53
Identities = 92/210 (43%), Positives = 133/210 (63%), Gaps = 12/210 (5%)
Query: 12 IEDVIQSFQKGEMVIVTDADDRENEADLVLAAIHCTSEKMAFIIRHTCGIVCTPMPFHTA 71
I DVIQ+F+ GE V+V D RENEADL++AA T+E+MAF++RH+ G++C P+
Sbjct: 4 IPDVIQAFKNGEFVVVLDDPSRENEADLIIAAESVTTEQMAFMVRHSSGLICAPLTPERT 63
Query: 72 HKLKLNPMVLENESVHKTAFTVSVDSKH-GITTGISADDRAYTIKNLANPHSIADNFVRP 130
L L MV N TA+TVSVD++H TTGISA DRA + LA P + +F RP
Sbjct: 64 TALDLPQMVTHNADPRGTAYTVSVDAEHPSTTTGISAHDRALACRMLAAPDAQPSHFRRP 123
Query: 131 GHIFPLISRDGGVLVRPGHTEASVDLCKITGLPPIAVICELVNDDG-----------TIK 179
GH+FPL + GGV R GHTEA V+LC++ G P+AVI E+V+D +
Sbjct: 124 GHVFPLRAVAGGVRARRGHTEAGVELCRLAGKRPVAVISEIVDDGQEVEGRAVRAAPGML 183
Query: 180 KGKQVIEFSKKYDLKIISVQDLIAWRKKKE 209
+G + + F++++ LK+ +++D+IA +K E
Sbjct: 184 RGDECVAFARRWGLKVCTIEDMIAHVEKTE 213
>d1tksa_ d.115.1.2 (A:) 3,4-dihydroxy-2-butanone 4-phosphate
synthase, DHBP synthase, RibB {Candida albicans [TaxId:
5476]}
Length = 202
Score = 199 bits (506), Expect = 2e-52
Identities = 90/197 (45%), Positives = 131/197 (66%), Gaps = 1/197 (0%)
Query: 12 IEDVIQSFQKGEMVIVTDADDRENEADLVLAAIHCTSEKMAFIIRHTCGIVCTPMPFHTA 71
IE+ +++++ GE +IV D +DRENE DL++AA T EKMAF++R++ G VC P+ A
Sbjct: 6 IEEALEAYKNGEFLIVMDDEDRENEGDLIMAAELITQEKMAFLVRYSSGYVCVPLSEERA 65
Query: 72 HKLKLNPMVLENESVHKTAFTVSVDSKHGITTGISADDRAYTIKNLANPHSIADNFVRPG 131
++L+L PM+ H TA+T++ D G TTGISA DRA T ++LANP+S +F++PG
Sbjct: 66 NQLELPPMLANRSDRHGTAYTITCDFAEGTTTGISAHDRALTTRSLANPNSKPQDFIKPG 125
Query: 132 HIFPLISRDGGVLVRPGHTEASVDLCKITGLPPIAVICELVND-DGTIKKGKQVIEFSKK 190
HI PL + G + R GHTEA+V L + GL P VICELV D DG + + I+F KK
Sbjct: 126 HILPLRAVPGLLKKRRGHTEAAVQLSTLAGLQPAGVICELVRDEDGLMMRLDDCIQFGKK 185
Query: 191 YDLKIISVQDLIAWRKK 207
+ +KII++ L+ + K
Sbjct: 186 HGIKIININQLVEYISK 202
>d1mfah1 b.1.1.1 (H:251-367) Immunoglobulin heavy chain variable
domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId:
10090]}
Length = 117
Score = 25.8 bits (56), Expect = 3.0
Identities = 11/22 (50%), Positives = 14/22 (63%), Gaps = 4/22 (18%)
Query: 141 GGVLVRPGHTEASVDL-CKITG 161
G V+ RPG ASV + CK +G
Sbjct: 8 GTVVARPG---ASVKMSCKASG 26
>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis
[TaxId: 1351]}
Length = 123
Score = 25.6 bits (55), Expect = 3.5
Identities = 7/29 (24%), Positives = 14/29 (48%)
Query: 16 IQSFQKGEMVIVTDADDRENEADLVLAAI 44
++ ++ V D +ADLV+ A+
Sbjct: 95 VERYEGDGRVQKVVTDKNAYDADLVVVAV 123
>d1v2xa_ c.116.1.1 (A:) tRNA (Gm18) methyltransferase TrmH
{Thermus thermophilus [TaxId: 274]}
Length = 191
Score = 25.3 bits (54), Expect = 4.1
Identities = 14/69 (20%), Positives = 28/69 (40%), Gaps = 5/69 (7%)
Query: 1 MKQKKSLDERYIEDVIQSFQKGEMVIVTDADDRENEADLVLAAIHCTSEKMAFIIRHTCG 60
M+++ R IE+V++ Q V++ + N L+AI T + + + H
Sbjct: 1 MRERTEARRRRIEEVLRRRQPDLTVLLENVHKPHN-----LSAILRTCDAVGVLEAHAVN 55
Query: 61 IVCTPMPFH 69
F+
Sbjct: 56 PTGGVPTFN 64
>d1uhca_ b.34.2.1 (A:) Hypothetical protein Baa76854.1 (KIAA1010)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 79
Score = 24.8 bits (54), Expect = 5.4
Identities = 2/21 (9%), Positives = 7/21 (33%)
Query: 18 SFQKGEMVIVTDADDRENEAD 38
S + + + + D +
Sbjct: 31 SVSANQKLKILEFKDVTGNTE 51
>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma
cruzi [TaxId: 5693]}
Length = 117
Score = 24.0 bits (51), Expect = 9.3
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 25 VIVTDADDRENEADLVLAAI 44
VT ++ + DLV+ AI
Sbjct: 98 KSVTFESGKKMDFDLVMMAI 117
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.136 0.398
Gapped
Lambda K H
0.267 0.0678 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 785,851
Number of extensions: 35831
Number of successful extensions: 192
Number of sequences better than 10.0: 1
Number of HSP's gapped: 186
Number of HSP's successfully gapped: 26
Length of query: 210
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 129
Effective length of database: 1,295,466
Effective search space: 167115114
Effective search space used: 167115114
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.5 bits)