RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254780359|ref|YP_003064772.1| GTP cyclohydrolase II protein (riboflavin biosynthesis) [Candidatus Liberibacter asiaticus str. psy62] (210 letters) >d1snna_ d.115.1.2 (A:) 3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB {Archaeon Methanocaldococcus jannaschii [TaxId: 2190]} Length = 219 Score = 209 bits (534), Expect = 1e-55 Identities = 63/217 (29%), Positives = 114/217 (52%), Gaps = 25/217 (11%) Query: 12 IEDVIQSFQKGEMVIVTDADDRENEADLVLAAIHCTSEKMAFIIRHTCGIVCTPMPFHTA 71 +E I++ +KGE+++V D+D+RE E D+V+A+ T E + + + G++CT + Sbjct: 3 VEKAIEALKKGEIILVYDSDEREGETDMVVASQFITPEHIRIMRKDAGGLICTALHPDIC 62 Query: 72 HKLKLNPMVLENESV------------------HKTAFTVSVDSKHGITTGISADDRAYT 113 +KL + MV E K++F+++++ + TGI+ +DRA+T Sbjct: 63 NKLGIPFMVDILEFASQKFKVLRELYPNDIPYDEKSSFSITINHRKT-FTGITDNDRAFT 121 Query: 114 IKNLAN------PHSIADNFVRPGHIFPLISRDGGVLVRPGHTEASVDLCKITGLPPIAV 167 IK LA + F PG + L + +G V R GHTE +V L ++ L PI Sbjct: 122 IKKLAELVKEGRFNDFGKEFRSPGSVTLLRAAEGLVKNRQGHTEMTVALAELANLVPITT 181 Query: 168 ICELVNDDGTIKKGKQVIEFSKKYDLKIISVQDLIAW 204 ICE++ DDG + +++K++L +S +++I + Sbjct: 182 ICEMMGDDGNAMSKNETKRYAEKHNLIYLSGEEIINY 218 >d1g57a_ d.115.1.2 (A:) 3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB {Escherichia coli [TaxId: 562]} Length = 209 Score = 204 bits (521), Expect = 4e-54 Identities = 81/198 (40%), Positives = 127/198 (64%) Query: 12 IEDVIQSFQKGEMVIVTDADDRENEADLVLAAIHCTSEKMAFIIRHTCGIVCTPMPFHTA 71 +E+ + + ++G V+V D +DRENE D++ A T E+MA IRH GIVC + Sbjct: 12 VENALAALREGRGVMVLDDEDRENEGDMIFPAETMTVEQMALTIRHGSGIVCLCITEDRR 71 Query: 72 HKLKLNPMVLENESVHKTAFTVSVDSKHGITTGISADDRAYTIKNLANPHSIADNFVRPG 131 +L L MV N S + T FTV++++ G+TTG+SA DR T++ + + RPG Sbjct: 72 KQLDLPMMVENNTSAYGTGFTVTIEAAEGVTTGVSAADRITTVRAAIADGAKPSDLNRPG 131 Query: 132 HIFPLISRDGGVLVRPGHTEASVDLCKITGLPPIAVICELVNDDGTIKKGKQVIEFSKKY 191 H+FPL ++ GGVL R GHTEA++DL + G P V+CEL NDDGT+ + + IEF+ K+ Sbjct: 132 HVFPLRAQAGGVLTRGGHTEATIDLMTLAGFKPAGVLCELTNDDGTMARAPECIEFANKH 191 Query: 192 DLKIISVQDLIAWRKKKE 209 ++ +++++DL+A+R+ E Sbjct: 192 NMALVTIEDLVAYRQAHE 209 >d1k4ia_ d.115.1.2 (A:) 3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB {Magnaporthe grisea [TaxId: 148305]} Length = 216 Score = 200 bits (509), Expect = 8e-53 Identities = 92/210 (43%), Positives = 133/210 (63%), Gaps = 12/210 (5%) Query: 12 IEDVIQSFQKGEMVIVTDADDRENEADLVLAAIHCTSEKMAFIIRHTCGIVCTPMPFHTA 71 I DVIQ+F+ GE V+V D RENEADL++AA T+E+MAF++RH+ G++C P+ Sbjct: 4 IPDVIQAFKNGEFVVVLDDPSRENEADLIIAAESVTTEQMAFMVRHSSGLICAPLTPERT 63 Query: 72 HKLKLNPMVLENESVHKTAFTVSVDSKH-GITTGISADDRAYTIKNLANPHSIADNFVRP 130 L L MV N TA+TVSVD++H TTGISA DRA + LA P + +F RP Sbjct: 64 TALDLPQMVTHNADPRGTAYTVSVDAEHPSTTTGISAHDRALACRMLAAPDAQPSHFRRP 123 Query: 131 GHIFPLISRDGGVLVRPGHTEASVDLCKITGLPPIAVICELVNDDG-----------TIK 179 GH+FPL + GGV R GHTEA V+LC++ G P+AVI E+V+D + Sbjct: 124 GHVFPLRAVAGGVRARRGHTEAGVELCRLAGKRPVAVISEIVDDGQEVEGRAVRAAPGML 183 Query: 180 KGKQVIEFSKKYDLKIISVQDLIAWRKKKE 209 +G + + F++++ LK+ +++D+IA +K E Sbjct: 184 RGDECVAFARRWGLKVCTIEDMIAHVEKTE 213 >d1tksa_ d.115.1.2 (A:) 3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB {Candida albicans [TaxId: 5476]} Length = 202 Score = 199 bits (506), Expect = 2e-52 Identities = 90/197 (45%), Positives = 131/197 (66%), Gaps = 1/197 (0%) Query: 12 IEDVIQSFQKGEMVIVTDADDRENEADLVLAAIHCTSEKMAFIIRHTCGIVCTPMPFHTA 71 IE+ +++++ GE +IV D +DRENE DL++AA T EKMAF++R++ G VC P+ A Sbjct: 6 IEEALEAYKNGEFLIVMDDEDRENEGDLIMAAELITQEKMAFLVRYSSGYVCVPLSEERA 65 Query: 72 HKLKLNPMVLENESVHKTAFTVSVDSKHGITTGISADDRAYTIKNLANPHSIADNFVRPG 131 ++L+L PM+ H TA+T++ D G TTGISA DRA T ++LANP+S +F++PG Sbjct: 66 NQLELPPMLANRSDRHGTAYTITCDFAEGTTTGISAHDRALTTRSLANPNSKPQDFIKPG 125 Query: 132 HIFPLISRDGGVLVRPGHTEASVDLCKITGLPPIAVICELVND-DGTIKKGKQVIEFSKK 190 HI PL + G + R GHTEA+V L + GL P VICELV D DG + + I+F KK Sbjct: 126 HILPLRAVPGLLKKRRGHTEAAVQLSTLAGLQPAGVICELVRDEDGLMMRLDDCIQFGKK 185 Query: 191 YDLKIISVQDLIAWRKK 207 + +KII++ L+ + K Sbjct: 186 HGIKIININQLVEYISK 202 >d1mfah1 b.1.1.1 (H:251-367) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} Length = 117 Score = 25.8 bits (56), Expect = 3.0 Identities = 11/22 (50%), Positives = 14/22 (63%), Gaps = 4/22 (18%) Query: 141 GGVLVRPGHTEASVDL-CKITG 161 G V+ RPG ASV + CK +G Sbjct: 8 GTVVARPG---ASVKMSCKASG 26 >d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} Length = 123 Score = 25.6 bits (55), Expect = 3.5 Identities = 7/29 (24%), Positives = 14/29 (48%) Query: 16 IQSFQKGEMVIVTDADDRENEADLVLAAI 44 ++ ++ V D +ADLV+ A+ Sbjct: 95 VERYEGDGRVQKVVTDKNAYDADLVVVAV 123 >d1v2xa_ c.116.1.1 (A:) tRNA (Gm18) methyltransferase TrmH {Thermus thermophilus [TaxId: 274]} Length = 191 Score = 25.3 bits (54), Expect = 4.1 Identities = 14/69 (20%), Positives = 28/69 (40%), Gaps = 5/69 (7%) Query: 1 MKQKKSLDERYIEDVIQSFQKGEMVIVTDADDRENEADLVLAAIHCTSEKMAFIIRHTCG 60 M+++ R IE+V++ Q V++ + N L+AI T + + + H Sbjct: 1 MRERTEARRRRIEEVLRRRQPDLTVLLENVHKPHN-----LSAILRTCDAVGVLEAHAVN 55 Query: 61 IVCTPMPFH 69 F+ Sbjct: 56 PTGGVPTFN 64 >d1uhca_ b.34.2.1 (A:) Hypothetical protein Baa76854.1 (KIAA1010) {Human (Homo sapiens) [TaxId: 9606]} Length = 79 Score = 24.8 bits (54), Expect = 5.4 Identities = 2/21 (9%), Positives = 7/21 (33%) Query: 18 SFQKGEMVIVTDADDRENEAD 38 S + + + + D + Sbjct: 31 SVSANQKLKILEFKDVTGNTE 51 >d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} Length = 117 Score = 24.0 bits (51), Expect = 9.3 Identities = 7/20 (35%), Positives = 11/20 (55%) Query: 25 VIVTDADDRENEADLVLAAI 44 VT ++ + DLV+ AI Sbjct: 98 KSVTFESGKKMDFDLVMMAI 117 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.320 0.136 0.398 Gapped Lambda K H 0.267 0.0678 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 785,851 Number of extensions: 35831 Number of successful extensions: 192 Number of sequences better than 10.0: 1 Number of HSP's gapped: 186 Number of HSP's successfully gapped: 26 Length of query: 210 Length of database: 2,407,596 Length adjustment: 81 Effective length of query: 129 Effective length of database: 1,295,466 Effective search space: 167115114 Effective search space used: 167115114 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 51 (23.5 bits)