BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780359|ref|YP_003064772.1| GTP cyclohydrolase II protein
(riboflavin biosynthesis) [Candidatus Liberibacter asiaticus str.
psy62]
(210 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780359|ref|YP_003064772.1| GTP cyclohydrolase II protein (riboflavin biosynthesis) [Candidatus
Liberibacter asiaticus str. psy62]
Length = 210
Score = 433 bits (1113), Expect = e-123, Method: Compositional matrix adjust.
Identities = 210/210 (100%), Positives = 210/210 (100%)
Query: 1 MKQKKSLDERYIEDVIQSFQKGEMVIVTDADDRENEADLVLAAIHCTSEKMAFIIRHTCG 60
MKQKKSLDERYIEDVIQSFQKGEMVIVTDADDRENEADLVLAAIHCTSEKMAFIIRHTCG
Sbjct: 1 MKQKKSLDERYIEDVIQSFQKGEMVIVTDADDRENEADLVLAAIHCTSEKMAFIIRHTCG 60
Query: 61 IVCTPMPFHTAHKLKLNPMVLENESVHKTAFTVSVDSKHGITTGISADDRAYTIKNLANP 120
IVCTPMPFHTAHKLKLNPMVLENESVHKTAFTVSVDSKHGITTGISADDRAYTIKNLANP
Sbjct: 61 IVCTPMPFHTAHKLKLNPMVLENESVHKTAFTVSVDSKHGITTGISADDRAYTIKNLANP 120
Query: 121 HSIADNFVRPGHIFPLISRDGGVLVRPGHTEASVDLCKITGLPPIAVICELVNDDGTIKK 180
HSIADNFVRPGHIFPLISRDGGVLVRPGHTEASVDLCKITGLPPIAVICELVNDDGTIKK
Sbjct: 121 HSIADNFVRPGHIFPLISRDGGVLVRPGHTEASVDLCKITGLPPIAVICELVNDDGTIKK 180
Query: 181 GKQVIEFSKKYDLKIISVQDLIAWRKKKEI 210
GKQVIEFSKKYDLKIISVQDLIAWRKKKEI
Sbjct: 181 GKQVIEFSKKYDLKIISVQDLIAWRKKKEI 210
>gi|254781107|ref|YP_003065520.1| phosphoglucomutase [Candidatus Liberibacter asiaticus str. psy62]
Length = 542
Score = 30.0 bits (66), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 25/109 (22%), Positives = 44/109 (40%), Gaps = 1/109 (0%)
Query: 3 QKKSLDERYIEDVIQSFQKGEMVIVTDADDRENEADLVLAAIH-CTSEKMAFIIRHTCGI 61
Q+ S E +I+ + + E +V D R ++ I + A II GI
Sbjct: 29 QQNSYTENFIQAIFNNVDCAEKTLVVGGDGRFYNHIVIQKIIKIAAANGFARIIIGKGGI 88
Query: 62 VCTPMPFHTAHKLKLNPMVLENESVHKTAFTVSVDSKHGITTGISADDR 110
+ TP H K K + ++ S + T K+ ++G SA ++
Sbjct: 89 LSTPAVSHLIRKYKASGGIILTASHNPAGATQDFGIKYNTSSGGSASEQ 137
>gi|254780802|ref|YP_003065215.1| leucyl-tRNA synthetase [Candidatus Liberibacter asiaticus str.
psy62]
Length = 869
Score = 27.7 bits (60), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 38/88 (43%), Gaps = 15/88 (17%)
Query: 98 KHGITTGISADDRAYTIKNLANPHSIADNFVRPGHIFPLISRD---GGVLVRPGHTEASV 154
K GI TGI +K+ NP N V P +I + + G + P + +
Sbjct: 305 KKGIYTGIH-------VKHPLNP-----NVVIPVYIANFVFMNYGTGAIFGCPFADQRDM 352
Query: 155 DLCKITGLPPIAVICELVNDDGTIKKGK 182
D K GLP I ++ +N I++GK
Sbjct: 353 DFAKKYGLPIIPIMKRSINHSQDIEEGK 380
>gi|254780757|ref|YP_003065170.1| glycyl-tRNA synthetase subunit alpha [Candidatus Liberibacter
asiaticus str. psy62]
Length = 307
Score = 27.3 bits (59), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 40/78 (51%), Gaps = 5/78 (6%)
Query: 55 IRHTCGIVCTPMPFHTAHKLKLNPMVLEN-ESVHKTAFTVSVDSKHGITTGISAD-DRAY 112
+ CGI C+P+ + L+ M ++N SV+ F +++ ++ + I A ++ Y
Sbjct: 152 FQQVCGIECSPISGEITYGLERLAMYVQNVNSVYDIVFN-AIEGQNVLYGDIFAQSEQEY 210
Query: 113 TIKNL--ANPHSIADNFV 128
+ N ANP + ++F+
Sbjct: 211 SRYNFEYANPEILHNHFI 228
>gi|254780561|ref|YP_003064974.1| thiamine transporter substrate binding subunit [Candidatus
Liberibacter asiaticus str. psy62]
Length = 338
Score = 26.2 bits (56), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 5/55 (9%)
Query: 154 VDLCKITGLPPIAVIC-----ELVNDDGTIKKGKQVIEFSKKYDLKIISVQDLIA 203
+ C + GLP V+ V D+G K KQ E +LK+I + D +A
Sbjct: 18 ISYCTLDGLPAKPVLTVYTYNSFVADEGAGPKIKQAFERKCNCELKLIGLSDGVA 72
>gi|254780652|ref|YP_003065065.1| Fructose-bisphosphate aldolase [Candidatus Liberibacter asiaticus
str. psy62]
Length = 339
Score = 24.6 bits (52), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 156 LCKITGLPPIAVICELVNDDGTIKKGKQVIEF 187
LC+ GL PI L+ D TI++ +V EF
Sbjct: 165 LCQNAGLVPIVEPEVLMEGDHTIERCAEVTEF 196
>gi|254780716|ref|YP_003065129.1| 6-phosphogluconate dehydrogenase [Candidatus Liberibacter asiaticus
str. psy62]
Length = 475
Score = 23.9 bits (50), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 159 ITGLPPIAVICELVNDDGT 177
ITG+P I VIC+ + GT
Sbjct: 246 ITGMPIIDVICDKASQKGT 264
>gi|254780605|ref|YP_003065018.1| putative aminopeptidase [Candidatus Liberibacter asiaticus str.
psy62]
Length = 609
Score = 23.5 bits (49), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 37/85 (43%), Gaps = 22/85 (25%)
Query: 79 MVLENESVHKTAFTVSVDSKHGITTGISADDRAYTIKNLANPHSIADNFVRPGHIFPLIS 138
+VL +SV + VD ++ + D +TIKN+A + P H + IS
Sbjct: 67 IVLRQKSV------IFVDGRYTLQVEKEVDTALFTIKNIA---------IEPLHAW--IS 109
Query: 139 RDGGVLVRPG-----HTEASVDLCK 158
G V +R G H+ VDL +
Sbjct: 110 EHGFVGLRLGLDSRLHSSFEVDLLQ 134
>gi|254781188|ref|YP_003065601.1| hypothetical protein CLIBASIA_05475 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 185
Score = 22.3 bits (46), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 73 KLKLNPMVLENESVHKTAFTVSVDSKHGI 101
K ++ +LE S K VSV+SKH I
Sbjct: 107 KQRMGTFLLEKLSNQKYGPRVSVESKHTI 135
>gi|254780397|ref|YP_003064810.1| 4-hydroxythreonine-4-phosphate dehydrogenase [Candidatus
Liberibacter asiaticus str. psy62]
Length = 343
Score = 21.9 bits (45), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 24/109 (22%), Positives = 44/109 (40%), Gaps = 5/109 (4%)
Query: 88 KTAFTVSVDSKHGITTGISADDRAYTIKNLANPHSIADNFVRPGH---IFPLISRDGGVL 144
+TA + + + ++ +S A +A + F PGH + L ++ G+
Sbjct: 94 QTASSTIANIEKAVSLTLSGQALAIVTNPIAKFLLYQEKFKFPGHTEFLAELAKKNTGIT 153
Query: 145 VRPGHTEASVDL--CKITGLPPIAVICELVNDDGTIKKGKQVIEFSKKY 191
+P + L +T PIA IC +++ I+ V KKY
Sbjct: 154 FKPVMMLSGPQLRTVPVTIHIPIADICRILSTKRIIETSDTVYNAMKKY 202
>gi|254780488|ref|YP_003064901.1| adenosylmethionine--8-amino-7-oxononanoate transaminase [Candidatus
Liberibacter asiaticus str. psy62]
Length = 423
Score = 21.9 bits (45), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 8/29 (27%), Positives = 17/29 (58%)
Query: 182 KQVIEFSKKYDLKIISVQDLIAWRKKKEI 210
K+ + +KKYD +I+ + + W + +I
Sbjct: 219 KEFMRITKKYDTLLIADEVMTGWGRTGKI 247
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.320 0.136 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 135,444
Number of Sequences: 1233
Number of extensions: 5215
Number of successful extensions: 15
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 7
Number of HSP's gapped (non-prelim): 11
length of query: 210
length of database: 328,796
effective HSP length: 70
effective length of query: 140
effective length of database: 242,486
effective search space: 33948040
effective search space used: 33948040
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 36 (18.5 bits)