BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780359|ref|YP_003064772.1| GTP cyclohydrolase II protein (riboflavin biosynthesis) [Candidatus Liberibacter asiaticus str. psy62] (210 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780359|ref|YP_003064772.1| GTP cyclohydrolase II protein (riboflavin biosynthesis) [Candidatus Liberibacter asiaticus str. psy62] Length = 210 Score = 433 bits (1113), Expect = e-123, Method: Compositional matrix adjust. Identities = 210/210 (100%), Positives = 210/210 (100%) Query: 1 MKQKKSLDERYIEDVIQSFQKGEMVIVTDADDRENEADLVLAAIHCTSEKMAFIIRHTCG 60 MKQKKSLDERYIEDVIQSFQKGEMVIVTDADDRENEADLVLAAIHCTSEKMAFIIRHTCG Sbjct: 1 MKQKKSLDERYIEDVIQSFQKGEMVIVTDADDRENEADLVLAAIHCTSEKMAFIIRHTCG 60 Query: 61 IVCTPMPFHTAHKLKLNPMVLENESVHKTAFTVSVDSKHGITTGISADDRAYTIKNLANP 120 IVCTPMPFHTAHKLKLNPMVLENESVHKTAFTVSVDSKHGITTGISADDRAYTIKNLANP Sbjct: 61 IVCTPMPFHTAHKLKLNPMVLENESVHKTAFTVSVDSKHGITTGISADDRAYTIKNLANP 120 Query: 121 HSIADNFVRPGHIFPLISRDGGVLVRPGHTEASVDLCKITGLPPIAVICELVNDDGTIKK 180 HSIADNFVRPGHIFPLISRDGGVLVRPGHTEASVDLCKITGLPPIAVICELVNDDGTIKK Sbjct: 121 HSIADNFVRPGHIFPLISRDGGVLVRPGHTEASVDLCKITGLPPIAVICELVNDDGTIKK 180 Query: 181 GKQVIEFSKKYDLKIISVQDLIAWRKKKEI 210 GKQVIEFSKKYDLKIISVQDLIAWRKKKEI Sbjct: 181 GKQVIEFSKKYDLKIISVQDLIAWRKKKEI 210 >gi|254781107|ref|YP_003065520.1| phosphoglucomutase [Candidatus Liberibacter asiaticus str. psy62] Length = 542 Score = 30.0 bits (66), Expect = 0.031, Method: Compositional matrix adjust. Identities = 25/109 (22%), Positives = 44/109 (40%), Gaps = 1/109 (0%) Query: 3 QKKSLDERYIEDVIQSFQKGEMVIVTDADDRENEADLVLAAIH-CTSEKMAFIIRHTCGI 61 Q+ S E +I+ + + E +V D R ++ I + A II GI Sbjct: 29 QQNSYTENFIQAIFNNVDCAEKTLVVGGDGRFYNHIVIQKIIKIAAANGFARIIIGKGGI 88 Query: 62 VCTPMPFHTAHKLKLNPMVLENESVHKTAFTVSVDSKHGITTGISADDR 110 + TP H K K + ++ S + T K+ ++G SA ++ Sbjct: 89 LSTPAVSHLIRKYKASGGIILTASHNPAGATQDFGIKYNTSSGGSASEQ 137 >gi|254780802|ref|YP_003065215.1| leucyl-tRNA synthetase [Candidatus Liberibacter asiaticus str. psy62] Length = 869 Score = 27.7 bits (60), Expect = 0.14, Method: Compositional matrix adjust. Identities = 25/88 (28%), Positives = 38/88 (43%), Gaps = 15/88 (17%) Query: 98 KHGITTGISADDRAYTIKNLANPHSIADNFVRPGHIFPLISRD---GGVLVRPGHTEASV 154 K GI TGI +K+ NP N V P +I + + G + P + + Sbjct: 305 KKGIYTGIH-------VKHPLNP-----NVVIPVYIANFVFMNYGTGAIFGCPFADQRDM 352 Query: 155 DLCKITGLPPIAVICELVNDDGTIKKGK 182 D K GLP I ++ +N I++GK Sbjct: 353 DFAKKYGLPIIPIMKRSINHSQDIEEGK 380 >gi|254780757|ref|YP_003065170.1| glycyl-tRNA synthetase subunit alpha [Candidatus Liberibacter asiaticus str. psy62] Length = 307 Score = 27.3 bits (59), Expect = 0.18, Method: Compositional matrix adjust. Identities = 19/78 (24%), Positives = 40/78 (51%), Gaps = 5/78 (6%) Query: 55 IRHTCGIVCTPMPFHTAHKLKLNPMVLEN-ESVHKTAFTVSVDSKHGITTGISAD-DRAY 112 + CGI C+P+ + L+ M ++N SV+ F +++ ++ + I A ++ Y Sbjct: 152 FQQVCGIECSPISGEITYGLERLAMYVQNVNSVYDIVFN-AIEGQNVLYGDIFAQSEQEY 210 Query: 113 TIKNL--ANPHSIADNFV 128 + N ANP + ++F+ Sbjct: 211 SRYNFEYANPEILHNHFI 228 >gi|254780561|ref|YP_003064974.1| thiamine transporter substrate binding subunit [Candidatus Liberibacter asiaticus str. psy62] Length = 338 Score = 26.2 bits (56), Expect = 0.44, Method: Compositional matrix adjust. Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 5/55 (9%) Query: 154 VDLCKITGLPPIAVIC-----ELVNDDGTIKKGKQVIEFSKKYDLKIISVQDLIA 203 + C + GLP V+ V D+G K KQ E +LK+I + D +A Sbjct: 18 ISYCTLDGLPAKPVLTVYTYNSFVADEGAGPKIKQAFERKCNCELKLIGLSDGVA 72 >gi|254780652|ref|YP_003065065.1| Fructose-bisphosphate aldolase [Candidatus Liberibacter asiaticus str. psy62] Length = 339 Score = 24.6 bits (52), Expect = 1.2, Method: Compositional matrix adjust. Identities = 13/32 (40%), Positives = 18/32 (56%) Query: 156 LCKITGLPPIAVICELVNDDGTIKKGKQVIEF 187 LC+ GL PI L+ D TI++ +V EF Sbjct: 165 LCQNAGLVPIVEPEVLMEGDHTIERCAEVTEF 196 >gi|254780716|ref|YP_003065129.1| 6-phosphogluconate dehydrogenase [Candidatus Liberibacter asiaticus str. psy62] Length = 475 Score = 23.9 bits (50), Expect = 2.3, Method: Compositional matrix adjust. Identities = 10/19 (52%), Positives = 13/19 (68%) Query: 159 ITGLPPIAVICELVNDDGT 177 ITG+P I VIC+ + GT Sbjct: 246 ITGMPIIDVICDKASQKGT 264 >gi|254780605|ref|YP_003065018.1| putative aminopeptidase [Candidatus Liberibacter asiaticus str. psy62] Length = 609 Score = 23.5 bits (49), Expect = 3.1, Method: Compositional matrix adjust. Identities = 24/85 (28%), Positives = 37/85 (43%), Gaps = 22/85 (25%) Query: 79 MVLENESVHKTAFTVSVDSKHGITTGISADDRAYTIKNLANPHSIADNFVRPGHIFPLIS 138 +VL +SV + VD ++ + D +TIKN+A + P H + IS Sbjct: 67 IVLRQKSV------IFVDGRYTLQVEKEVDTALFTIKNIA---------IEPLHAW--IS 109 Query: 139 RDGGVLVRPG-----HTEASVDLCK 158 G V +R G H+ VDL + Sbjct: 110 EHGFVGLRLGLDSRLHSSFEVDLLQ 134 >gi|254781188|ref|YP_003065601.1| hypothetical protein CLIBASIA_05475 [Candidatus Liberibacter asiaticus str. psy62] Length = 185 Score = 22.3 bits (46), Expect = 7.0, Method: Compositional matrix adjust. Identities = 12/29 (41%), Positives = 16/29 (55%) Query: 73 KLKLNPMVLENESVHKTAFTVSVDSKHGI 101 K ++ +LE S K VSV+SKH I Sbjct: 107 KQRMGTFLLEKLSNQKYGPRVSVESKHTI 135 >gi|254780397|ref|YP_003064810.1| 4-hydroxythreonine-4-phosphate dehydrogenase [Candidatus Liberibacter asiaticus str. psy62] Length = 343 Score = 21.9 bits (45), Expect = 7.9, Method: Compositional matrix adjust. Identities = 24/109 (22%), Positives = 44/109 (40%), Gaps = 5/109 (4%) Query: 88 KTAFTVSVDSKHGITTGISADDRAYTIKNLANPHSIADNFVRPGH---IFPLISRDGGVL 144 +TA + + + ++ +S A +A + F PGH + L ++ G+ Sbjct: 94 QTASSTIANIEKAVSLTLSGQALAIVTNPIAKFLLYQEKFKFPGHTEFLAELAKKNTGIT 153 Query: 145 VRPGHTEASVDL--CKITGLPPIAVICELVNDDGTIKKGKQVIEFSKKY 191 +P + L +T PIA IC +++ I+ V KKY Sbjct: 154 FKPVMMLSGPQLRTVPVTIHIPIADICRILSTKRIIETSDTVYNAMKKY 202 >gi|254780488|ref|YP_003064901.1| adenosylmethionine--8-amino-7-oxononanoate transaminase [Candidatus Liberibacter asiaticus str. psy62] Length = 423 Score = 21.9 bits (45), Expect = 8.8, Method: Compositional matrix adjust. Identities = 8/29 (27%), Positives = 17/29 (58%) Query: 182 KQVIEFSKKYDLKIISVQDLIAWRKKKEI 210 K+ + +KKYD +I+ + + W + +I Sbjct: 219 KEFMRITKKYDTLLIADEVMTGWGRTGKI 247 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.320 0.136 0.398 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 135,444 Number of Sequences: 1233 Number of extensions: 5215 Number of successful extensions: 15 Number of sequences better than 100.0: 11 Number of HSP's better than 100.0 without gapping: 8 Number of HSP's successfully gapped in prelim test: 3 Number of HSP's that attempted gapping in prelim test: 7 Number of HSP's gapped (non-prelim): 11 length of query: 210 length of database: 328,796 effective HSP length: 70 effective length of query: 140 effective length of database: 242,486 effective search space: 33948040 effective search space used: 33948040 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 36 (18.5 bits)