HHsearch alignment for GI: 254780360 and conserved domain: COG0109
>COG0109 CyoE Polyprenyltransferase (cytochrome oxidase assembly factor) [Posttranslational modification, protein turnover, chaperones].
Probab=100.00 E-value=0 Score=512.21 Aligned_cols=286 Identities=48% Similarity=0.850 Sum_probs=278.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCHHHHCHHHHH
Q ss_conf 36537999999626899999999999999708-98998999999999999999999886330661201371210705665
Q gi|254780360|r 4 QVFRLNFFIVLLKPRVMSLAIYTAFVGIVLAP-GHISVLKSVISIFAIAMGAGASGALNMYYDADIDKMMARTASRPIPL 82 (305)
Q Consensus 4 ~~~k~~~y~~L~kp~~~~~~~~~~~~g~~la~-~~~~~~~~~~~~~~~~l~~~a~~~~Nd~~D~~iD~~~~RT~~RPl~~ 82 (305)
T Consensus 14 ~~~~~k~yl~LtKPrvi~L~~it~~~g~~lA~~~~~~~~l~~~~~~g~~L~a~~a~a~N~~~DrDID~~M~RT~~RP~~~ 93 (304)
T COG0109 14 SRSTIKDYLQLTKPRVISLLLITAFAGMLLAPRGSINPLLLLLTLLGGALGAGGAGAFNMYIDRDIDALMERTRKRPLVT 93 (304)
T ss_pred HHHHHHHHHHHHCCEEEEHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHCCCCCCCC
T ss_conf 67789999987087055249999999999715465668999999999999998998986142540677532215898877
Q ss_pred HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHEEECCCCCC
Q ss_conf 30478989998888776689998863445899999998886544454431026656058888776642211013236885
Q gi|254780360|r 83 GQISPWEAWVLGVSLAVSSIVIMGLAINWVSATLLFMSIFCYVVIYTIWLKRFTPQNIVIGGIAGAIPPMIGWASVTGDV 162 (305)
Q Consensus 83 g~is~~~a~~~~~~l~~~~~~~l~~~~n~~~~~l~~~~~~~y~~iYtp~lKR~t~~~~~~~~i~ga~~~l~g~~a~~~~~ 162 (305)
T Consensus 94 G~i~p~~al~fgl~L~~~g~~~l~~~vn~laa~l~~~gi~~Yv~vYT~~lKR~T~~NiviGg~aGa~PpliGwaAvtg~~ 173 (304)
T COG0109 94 GLISPREALAFGLVLGVAGFSLLWFLVNLLAAVLGLFGIFFYVVVYTLWLKRRTPQNIVIGGFAGAMPPLIGWAAVTGSI 173 (304)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCEEEEECCC
T ss_conf 74289999999999999999999999879999999999999876321010377633025401245566523056560887
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 66321114788889999999998653566664101335124338877899743456898998764210221089999999
Q gi|254780360|r 163 SIASLVMFLIIFLWTPPHFWSLALLCKDDYQKASIPMLPNVVTDRTTKMHILIYTVLTSIVGVLPTMLGFASVTYGIIVF 242 (305)
Q Consensus 163 ~~~~~~l~~~~~~W~~~~~~~~a~~d~~dd~k~Gikslpv~~G~k~t~~~i~~ysi~~~llsll~~~~~~~g~~yli~al 242 (305)
T Consensus 174 ~~~a~~Lf~IiF~WtPpHfwALAl~~~~DY~~AgiPMlPvv~G~~~t~~~I~~y~~~l~~~sl~~~~~g~~g~~Y~v~a~ 253 (304)
T COG0109 174 SLGAILLFAIIFLWTPPHFWALALKYKDDYKAAGIPMLPVVKGERRTKRQILLYTLALAPVSLLLALLGYVGYLYLVVAT 253 (304)
T ss_pred CHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf 80599999999992667999999997887987499825413438999999999999999999999984000069999999
Q ss_pred HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 99999999999999504889978999998798999999999999986608
Q gi|254780360|r 243 FLGYHFTLWAWRTFLCKEDKDIRVTKKLFLESITYLFVLFTILMVDHLID 292 (305)
Q Consensus 243 i~~~~~l~~a~~~~~~~~~~~~k~a~klF~~S~~yl~ilfl~liid~~i~ 292 (305)
T Consensus 254 ~l~~~~l~~a~~~~~~---~~~~~A~klF~~S~~yL~~lf~~l~id~~~~ 300 (304)
T COG0109 254 LLGAWFLALAWKLYRK---DDRKWARKLFKYSIIYLALLFVALLIDSLLL 300 (304)
T ss_pred HHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999608---5379999999999999999999999999873