HHsearch alignment for GI: 254780360 and conserved domain: PRK12870

>PRK12870 ubiA prenyltransferase; Reviewed.
Probab=100.00  E-value=0  Score=455.16  Aligned_cols=279  Identities=18%  Similarity=0.208  Sum_probs=244.0

Q ss_pred             HHHHHHHHHH---HHHHHHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCHHHHCHHHH
Q ss_conf             5379999996---268999999999999997089-899899999999999999999988633066120137121070566
Q gi|254780360|r    6 FRLNFFIVLL---KPRVMSLAIYTAFVGIVLAPG-HISVLKSVISIFAIAMGAGASGALNMYYDADIDKMMARTASRPIP   81 (305)
Q Consensus         6 ~k~~~y~~L~---kp~~~~~~~~~~~~g~~la~~-~~~~~~~~~~~~~~~l~~~a~~~~Nd~~D~~iD~~~~RT~~RPl~   81 (305)
T Consensus         7 p~w~~y~~L~R~~kP~g~~LL~~p~~~~l~la~~g~p~~~~~~~~~~G~~~~rsagc~iNdi~DrdiD~~v~RT~~RPl~   86 (289)
T PRK12870          7 PTWLTIIRLLRWDKPAGRLILMIPALWAVFLAARGLPPLPLVGIIILGALATSAAGCVVNDLWDRDIDPHVERTRGRPLA   86 (289)
T ss_pred             CCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf             87899999974467675899999899999997578998999999999999999998699989998145788888887676


Q ss_pred             HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHEEECCCCC
Q ss_conf             53047898999888877668999886344589999999888654445443102665605888877664221101323688
Q gi|254780360|r   82 LGQISPWEAWVLGVSLAVSSIVIMGLAINWVSATLLFMSIFCYVVIYTIWLKRFTPQNIVIGGIAGAIPPMIGWASVTGD  161 (305)
Q Consensus        82 ~g~is~~~a~~~~~~l~~~~~~~l~~~~n~~~~~l~~~~~~~y~~iYtp~lKR~t~~~~~~~~i~ga~~~l~g~~a~~~~  161 (305)
T Consensus        87 ~G~is~~~A~~~~~~l~~~~~~ll-~~ln~~~~~l~~~~~~~-~~iY-p~~KR~t~~pq~~lG~~~~~~~l~gw~av~g~  163 (289)
T PRK12870         87 SRRLSVKVGIVIALVALLCAAGLA-FFLNPLSFWLCVAAVPV-IFLY-PLAKRVFPVPQLVLAAAWGFAVLISWSAVTGH  163 (289)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH-HHHH-HHCCEEEECCCHHHHHHHCCHHHHHHHHHCCC
T ss_conf             777579999999999999999999-99999999999999988-9976-51102267774056754100377899994699


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
Q ss_conf             56632111478888999999999865356666410133512433887789974345689899876421022108999999
Q gi|254780360|r  162 VSIASLVMFLIIFLWTPPHFWSLALLCKDDYQKASIPMLPNVVTDRTTKMHILIYTVLTSIVGVLPTMLGFASVTYGIIV  241 (305)
Q Consensus       162 ~~~~~~~l~~~~~~W~~~~~~~~a~~d~~dd~k~Gikslpv~~G~k~t~~~i~~ysi~~~llsll~~~~~~~g~~yli~a  241 (305)
T Consensus       164 l~~~~~lL~~~~~~Wt~~~DtiYA~qD~~dD~k~Gv~S~av~~G~~~~~~i~~~~~~~~~~l~~~g~~~~-l~~~y~~~~  242 (289)
T PRK12870        164 LEVATWLLWGATVFWTLGFDTVYAMSDREDDLRIGINSSAIFFGRYAPEAIGLFFALTVLFLAILGVLLE-LHPPFWLGL  242 (289)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH-CHHHHHHHH
T ss_conf             8768999999999999999899988517539876998775050500699999999999999999999985-319999999


Q ss_pred             HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             99999999999999950488997899999879899999999999998660
Q gi|254780360|r  242 FFLGYHFTLWAWRTFLCKEDKDIRVTKKLFLESITYLFVLFTILMVDHLI  291 (305)
Q Consensus       242 li~~~~~l~~a~~~~~~~~~~~~k~a~klF~~S~~yl~ilfl~liid~~i  291 (305)
T Consensus       243 ~~~~~~~~~q---~~~l~~~~~~~~~~~~F~~N~~~g~llf~gi~~d~ll  289 (289)
T PRK12870        243 ALATVLWARQ---YRRLQAELPPAAYGQLFLQNVWIGFILLAGMILGSLL  289 (289)
T ss_pred             HHHHHHHHHH---HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             9999999999---9996279986999999998399999999999998749