HHsearch alignment for GI: 254780360 and conserved domain: PRK12872

>PRK12872 ubiA prenyltransferase; Reviewed.
Probab=99.92  E-value=5.1e-22  Score=149.73  Aligned_cols=213  Identities=13%  Similarity=0.102  Sum_probs=138.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCHHCCCHHHHCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH
Q ss_conf             999999999999999886330661201371210705665304789899988887766899988634458999---99998
Q gi|254780360|r   44 VISIFAIAMGAGASGALNMYYDADIDKMMARTASRPIPLGQISPWEAWVLGVSLAVSSIVIMGLAINWVSAT---LLFMS  120 (305)
Q Consensus        44 ~~~~~~~~l~~~a~~~~Nd~~D~~iD~~~~RT~~RPl~~g~is~~~a~~~~~~l~~~~~~~l~~~~n~~~~~---l~~~~  120 (305)
T Consensus        49 ~llvl~~~l~~aagYiIN~~~D~e~D~IN~--P~r~~~~~~is~~~~~~~~~l~~~~-~~l~~~~~~~~~~~~~~~~~~~  125 (297)
T PRK12872         49 PLLLLITFLLALSVYSINYLTDLDEDRINN--PERVEFLKKIGEKLAYNFFFLAVLG-VYLGAYLSSVIMRPAFASIFIL  125 (297)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCHHHHHCCC--CCCHHHCCCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_conf             899999999998725640220311341479--8623310100399999999999999-9999999999998999999999


Q ss_pred             HHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HHHEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             886544454431026656058888776642-2110132368856632111478888999999999865356666410133
Q gi|254780360|r  121 IFCYVVIYTIWLKRFTPQNIVIGGIAGAIP-PMIGWASVTGDVSIASLVMFLIIFLWTPPHFWSLALLCKDDYQKASIPM  199 (305)
Q Consensus       121 ~~~y~~iYtp~lKR~t~~~~~~~~i~ga~~-~l~g~~a~~~~~~~~~~~l~~~~~~W~~~~~~~~a~~d~~dd~k~Giks  199 (305)
T Consensus       126 ~~~~~~~Ys~~LK~ip~~gNl~va~l~a~~~~~~~i~~~~~~~~~~i~~~a~F~fl~~lireivkDi~di~GD~~~g~~T  205 (297)
T PRK12872        126 GIIYLYLYKRRLKQIPLFKNLLVALVWGLSITILPVLYGGLATDSALLLVAAFAFLKNFVNTIVFDIKDIEGDRNSGLKT  205 (297)
T ss_pred             HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCE
T ss_conf             99999998999863510889999999999999999999934300899999999999999999971575131548669831


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH-HHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             512433887789974345689899876421022108-99999999999999999999950488
Q gi|254780360|r  200 LPNVVTDRTTKMHILIYTVLTSIVGVLPTMLGFASV-TYGIIVFFLGYHFTLWAWRTFLCKED  261 (305)
Q Consensus       200 lpv~~G~k~t~~~i~~ysi~~~llsll~~~~~~~g~-~yli~ali~~~~~l~~a~~~~~~~~~  261 (305)
T Consensus       206 lPi~~G~~~tk~ii~~l~~~~~~~~~~l~~~~~~~~~~y~~~~--~~~~l~~~~i~l~~a~~~  266 (297)
T PRK12872        206 LPIILGKRRTLRFLTILNLLPLALLVLGVYTGVFPTGLYLLLF--PLSAYVFFYIKITKADRK  266 (297)
T ss_pred             ECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHCCCH
T ss_conf             4835235889999999999999999999999887699999999--999999999999982766