HHsearch alignment for GI: 254780360 and conserved domain: PRK12872
>PRK12872 ubiA prenyltransferase; Reviewed.
Probab=99.92 E-value=5.1e-22 Score=149.73 Aligned_cols=213 Identities=13% Similarity=0.102 Sum_probs=138.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHCCCHHHHCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH
Q ss_conf 999999999999999886330661201371210705665304789899988887766899988634458999---99998
Q gi|254780360|r 44 VISIFAIAMGAGASGALNMYYDADIDKMMARTASRPIPLGQISPWEAWVLGVSLAVSSIVIMGLAINWVSAT---LLFMS 120 (305)
Q Consensus 44 ~~~~~~~~l~~~a~~~~Nd~~D~~iD~~~~RT~~RPl~~g~is~~~a~~~~~~l~~~~~~~l~~~~n~~~~~---l~~~~ 120 (305)
T Consensus 49 ~llvl~~~l~~aagYiIN~~~D~e~D~IN~--P~r~~~~~~is~~~~~~~~~l~~~~-~~l~~~~~~~~~~~~~~~~~~~ 125 (297)
T PRK12872 49 PLLLLITFLLALSVYSINYLTDLDEDRINN--PERVEFLKKIGEKLAYNFFFLAVLG-VYLGAYLSSVIMRPAFASIFIL 125 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCHHHHHCCC--CCCHHHCCCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_conf 899999999998725640220311341479--8623310100399999999999999-9999999999998999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HHHEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 886544454431026656058888776642-2110132368856632111478888999999999865356666410133
Q gi|254780360|r 121 IFCYVVIYTIWLKRFTPQNIVIGGIAGAIP-PMIGWASVTGDVSIASLVMFLIIFLWTPPHFWSLALLCKDDYQKASIPM 199 (305)
Q Consensus 121 ~~~y~~iYtp~lKR~t~~~~~~~~i~ga~~-~l~g~~a~~~~~~~~~~~l~~~~~~W~~~~~~~~a~~d~~dd~k~Giks 199 (305)
T Consensus 126 ~~~~~~~Ys~~LK~ip~~gNl~va~l~a~~~~~~~i~~~~~~~~~~i~~~a~F~fl~~lireivkDi~di~GD~~~g~~T 205 (297)
T PRK12872 126 GIIYLYLYKRRLKQIPLFKNLLVALVWGLSITILPVLYGGLATDSALLLVAAFAFLKNFVNTIVFDIKDIEGDRNSGLKT 205 (297)
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCE
T ss_conf 99999998999863510889999999999999999999934300899999999999999999971575131548669831
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH-HHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 512433887789974345689899876421022108-99999999999999999999950488
Q gi|254780360|r 200 LPNVVTDRTTKMHILIYTVLTSIVGVLPTMLGFASV-TYGIIVFFLGYHFTLWAWRTFLCKED 261 (305)
Q Consensus 200 lpv~~G~k~t~~~i~~ysi~~~llsll~~~~~~~g~-~yli~ali~~~~~l~~a~~~~~~~~~ 261 (305)
T Consensus 206 lPi~~G~~~tk~ii~~l~~~~~~~~~~l~~~~~~~~~~y~~~~--~~~~l~~~~i~l~~a~~~ 266 (297)
T PRK12872 206 LPIILGKRRTLRFLTILNLLPLALLVLGVYTGVFPTGLYLLLF--PLSAYVFFYIKITKADRK 266 (297)
T ss_pred ECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHCCCH
T ss_conf 4835235889999999999999999999999887699999999--999999999999982766