HHsearch alignment for GI: 254780360 and conserved domain: PRK12874
>PRK12874 ubiA prenyltransferase; Reviewed.
Probab=100.00 E-value=0 Score=422.95 Aligned_cols=281 Identities=19% Similarity=0.222 Sum_probs=245.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC------CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCHHHHC
Q ss_conf 365379999996268999999999999997089------89989999999999999999998863306612013712107
Q gi|254780360|r 4 QVFRLNFFIVLLKPRVMSLAIYTAFVGIVLAPG------HISVLKSVISIFAIAMGAGASGALNMYYDADIDKMMARTAS 77 (305)
Q Consensus 4 ~~~k~~~y~~L~kp~~~~~~~~~~~~g~~la~~------~~~~~~~~~~~~~~~l~~~a~~~~Nd~~D~~iD~~~~RT~~ 77 (305)
T Consensus 4 ~~~ki~~~~~lik~~htiFalpfa~~~~~la~~~~~~~~~~~~~~l~~~~~a~v~aRsag~~iN~~~Dr~iD~~~~RT~~ 83 (291)
T PRK12874 4 FTHKLKDISELVVFKHSIFSLPFIFIAMIVASKQKNGTGWFGFKLLILGILAAVSARNFAMGFNRLMDRDIDKDNPRTAN 83 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 89999999999987008988999999999986327887875599999999999999999989984634275357843578
Q ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHEEEC
Q ss_conf 05665304789899988887766899988634458999999988865444544310266560588887766422110132
Q gi|254780360|r 78 RPIPLGQISPWEAWVLGVSLAVSSIVIMGLAINWVSATLLFMSIFCYVVIYTIWLKRFTPQNIVIGGIAGAIPPMIGWAS 157 (305)
Q Consensus 78 RPl~~g~is~~~a~~~~~~l~~~~~~~l~~~~n~~~~~l~~~~~~~y~~iYtp~lKR~t~~~~~~~~i~ga~~~l~g~~a 157 (305)
T Consensus 84 Rpl~sG~is~~~a~~~~~~~~~~~~~-~~~~lN~l~~~ls~~~l~~-~~~Y-p~~KRft~~~~~~LG~~~~~~pl~~w~A 160 (291)
T PRK12874 84 RPSVDGRISRKGMVIFIVINALIFIV-VSYFINTLAFKLSFPFLIV-LGGY-SYFKRFSSLAHLVLGLSLGLAPIAGSVA 160 (291)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH-HHHH-HHHHHCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 77876777999999999999999999-9999869999999999999-9999-8898365370999999988899999999
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
Q ss_conf 36885663211147888899999999986535666641013351243388778997434568989987642102210899
Q gi|254780360|r 158 VTGDVSIASLVMFLIIFLWTPPHFWSLALLCKDDYQKASIPMLPNVVTDRTTKMHILIYTVLTSIVGVLPTMLGFASVTY 237 (305)
Q Consensus 158 ~~~~~~~~~~~l~~~~~~W~~~~~~~~a~~d~~dd~k~Gikslpv~~G~k~t~~~i~~ysi~~~llsll~~~~~~~g~~y 237 (305)
T Consensus 161 v~g~~~~~~~~L~~~~~~W~~gfD~iYA~qD~e~D~~~Gl~S~p~~fG~~~~l~i~~~~h~~~~i~~~~~g~~~~l~~~y 240 (291)
T PRK12874 161 VSGEIPLWSVFLALGVMFWVAGFDLLYSLQDMEFDKKRGLHSIPSKFGEKATLFISRLFHLLAVLFWLLFVWEAHLGFFA 240 (291)
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 74999899999999999999999999997758649986997656886805279999999999999999999997516999
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 999999999999999999950488997899999879899999999999998660
Q gi|254780360|r 238 GIIVFFLGYHFTLWAWRTFLCKEDKDIRVTKKLFLESITYLFVLFTILMVDHLI 291 (305)
Q Consensus 238 li~ali~~~~~l~~a~~~~~~~~~~~~k~a~klF~~S~~yl~ilfl~liid~~i 291 (305)
T Consensus 241 ~i~~~i~~~ll~y-qh~lv---~~d~~~~~~afF~~N~~iglilf~~illd~l~ 290 (291)
T PRK12874 241 YLGVIVSALILLY-EHYLV---RKDFKKIDRAFFTLNGYLGIVFFIFIVLDVLF 290 (291)
T ss_pred HHHHHHHHHHHHH-HHHHH---CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999-99996---28896799999997279999999999999973