HHsearch alignment for GI: 254780360 and conserved domain: PRK12875
>PRK12875 ubiA prenyltransferase; Reviewed.
Probab=99.79 E-value=3e-17 Score=121.45 Aligned_cols=213 Identities=12% Similarity=0.106 Sum_probs=128.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCHHHHCHHHH
Q ss_conf 5379999996268999999999999997089899----899999999999999999988633066120137121070566
Q gi|254780360|r 6 FRLNFFIVLLKPRVMSLAIYTAFVGIVLAPGHIS----VLKSVISIFAIAMGAGASGALNMYYDADIDKMMARTASRPIP 81 (305)
Q Consensus 6 ~k~~~y~~L~kp~~~~~~~~~~~~g~~la~~~~~----~~~~~~~~~~~~l~~~a~~~~Nd~~D~~iD~~~~RT~~RPl~ 81 (305)
T Consensus 6 ~~lR~Ll~~SRP~~WvnTagp~~~g~~la~~~~~~~~~~~~~~~~i~Fl~PyNllmYGINDvfD~esD~~NPRKGG~E-- 83 (281)
T PRK12875 6 TLARYLFRLSRPRFWLYLGGPVVVGVAYGATTVGELFSPAAVLLFLYFLFPANIFLYGVNDWFDADTDETNPKKDGRE-- 83 (281)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCC--
T ss_conf 999999996670688861308999999955661344288999999999877778873442333212103488766733--
Q ss_pred HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHCCCCCCHHHHHHHHHHHHHHEEECC
Q ss_conf 5304789899988887766899988634458999999988865444544---3102665605888877664221101323
Q gi|254780360|r 82 LGQISPWEAWVLGVSLAVSSIVIMGLAINWVSATLLFMSIFCYVVIYTI---WLKRFTPQNIVIGGIAGAIPPMIGWASV 158 (305)
Q Consensus 82 ~g~is~~~a~~~~~~l~~~~~~~l~~~~n~~~~~l~~~~~~~y~~iYtp---~lKR~t~~~~~~~~i~ga~~~l~g~~a~ 158 (305)
T Consensus 84 -~~~~~~~~~~~~v~~~~~~~~~f~l~~~~~-~~~~l~~~~f~~~~YSappLRFKerP~LDS~-Sn~~yv~P~v~~~al~ 160 (281)
T PRK12875 84 -VRYRGDAAVAAIVVLTGALSLLFLAPLPLA-GWPYLLAFLFLSYEYSAPPLRFKTTPVLDSL-SNGLYILPGIAAYALA 160 (281)
T ss_pred -CCCCCCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC-CCHHHHHHHHHHHHHH
T ss_conf -345787445799999879999999850388-9999999999998613885255665030000-2023650699999985
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-HHHHHHHHHHHH
Q ss_conf 6885663211147888899999999986535666641013351243388778997-434568989987
Q gi|254780360|r 159 TGDVSIASLVMFLIIFLWTPPHFWSLALLCKDDYQKASIPMLPNVVTDRTTKMHI-LIYTVLTSIVGV 225 (305)
Q Consensus 159 ~~~~~~~~~~l~~~~~~W~~~~~~~~a~~d~~dd~k~Gikslpv~~G~k~t~~~i-~~ysi~~~llsl 225 (305)
T Consensus 161 ~g~~p--~~~~l~a~~lW~ma~HaF~AvqDI~~DR~aGI~T~AT~LGar~T~~~~~~~wl~aa~~~~~ 226 (281)
T PRK12875 161 SGALP--PLAAVAAGWLWAMGMHTFSAIPDIEPDRAAGIQTTATFLGRRRALAYCAGCWLLAAAVFAF 226 (281)
T ss_pred CCCCC--CHHHHHHHHHHHHHHHHHCCCCCCCCCHHCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHC
T ss_conf 26775--1999999999999987734457774013328400001444336899999999999999960