HHsearch alignment for GI: 254780360 and conserved domain: PRK12887
>PRK12887 ubiA tocopherol phytyltransferase; Reviewed.
Probab=99.96 E-value=4.7e-26 Score=173.69 Aligned_cols=204 Identities=13% Similarity=0.130 Sum_probs=134.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC--HH-HHHHHHHHHHHHHHHHHH----HHHHHCCCHHCCCHHHHC
Q ss_conf 65379999996268999999999999997089899--89-999999999999999998----863306612013712107
Q gi|254780360|r 5 VFRLNFFIVLLKPRVMSLAIYTAFVGIVLAPGHIS--VL-KSVISIFAIAMGAGASGA----LNMYYDADIDKMMARTAS 77 (305)
Q Consensus 5 ~~k~~~y~~L~kp~~~~~~~~~~~~g~~la~~~~~--~~-~~~~~~~~~~l~~~a~~~----~Nd~~D~~iD~~~~RT~~ 77 (305)
T Consensus 11 ~~~l~a~~~FsRPhTiiGT~l~v~~~~l~a~~~~~~~~~~~~~~~~l~~~~a~l~~NiyiVGlNq~~D~eIDkINk--P~ 88 (309)
T PRK12887 11 MPWLYALWKFSRPHTIIGTSLSVLGLYLIAIAVSSNSFALTNLGLLLGAWVACLCGNVYIVGLNQLTDIEIDRINK--PH 88 (309)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCHHEEEHHHHHHHHHHHCCC--CC
T ss_conf 6689999987384799989999999999997516763338999999999999995132033101466554131268--89
Q ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHCCCCCCHH-HHH---HHHHH-
Q ss_conf 05665304789899988887766899988634458999999988865444544---31026656058-888---77664-
Q gi|254780360|r 78 RPIPLGQISPWEAWVLGVSLAVSSIVIMGLAINWVSATLLFMSIFCYVVIYTI---WLKRFTPQNIV-IGG---IAGAI- 149 (305)
Q Consensus 78 RPl~~g~is~~~a~~~~~~l~~~~~~~l~~~~n~~~~~l~~~~~~~y~~iYtp---~lKR~t~~~~~-~~~---i~ga~- 149 (305)
T Consensus 89 lPIpSG~is~~~g~~iv~~~~~lsl~la~~l-g~~l~~~~~i~l~l-g~aYS~PpLRlKr~~~~aalcI~~vrg~iv~lg 166 (309)
T PRK12887 89 LPLAAGEFSRRQGQIIVIITGILALILAALL-GPWLLLTVGISLLI-GTAYSLPPIRLKRFPLLAALCIFTVRGVIVNLG 166 (309)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH-HHHHCCCHHHHHHCCHHHHHHHHHHHHHHHHHH
T ss_conf 9888777668889999999999999999997-07899999999999-999807846654332377788777677999889
Q ss_pred -HHHHEEECCCC--CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf -22110132368--85663211147888899999999986535666641013351243388778997
Q gi|254780360|r 150 -PPMIGWASVTG--DVSIASLVMFLIIFLWTPPHFWSLALLCKDDYQKASIPMLPNVVTDRTTKMHI 213 (305)
Q Consensus 150 -~~l~g~~a~~~--~~~~~~~~l~~~~~~W~~~~~~~~a~~d~~dd~k~Gikslpv~~G~k~t~~~i 213 (305)
T Consensus 167 ~~~~~~~-~~~~~~~~~~~i~~~t~f~~~fa~~Iai~KDipDIEGDr~~GI~Tl~V~LG~k~v~~l~ 232 (309)
T PRK12887 167 LFLHFQW-LLQGPVEIPPPVWVLTLFVLVFTFAIAIFKDIPDMEGDRQYNITTFTLRLGKQRVFKLS 232 (309)
T ss_pred HHHHHHH-HHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHCCCEEECHHHHHHHHHHHH
T ss_conf 9999999-97577778837999999999999999998157423432751976543475389999999