HHsearch alignment for GI: 254780360 and conserved domain: PRK13105
>PRK13105 ubiA prenyltransferase; Reviewed.
Probab=99.89 E-value=2.6e-21 Score=145.55 Aligned_cols=273 Identities=16% Similarity=0.155 Sum_probs=161.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCHHHHCHHH---
Q ss_conf 36537999999626899999999999999708989989999999999999999998863306612013712107056---
Q gi|254780360|r 4 QVFRLNFFIVLLKPRVMSLAIYTAFVGIVLAPGHISVLKSVISIFAIAMGAGASGALNMYYDADIDKMMARTASRPI--- 80 (305)
Q Consensus 4 ~~~k~~~y~~L~kp~~~~~~~~~~~~g~~la~~~~~~~~~~~~~~~~~l~~~a~~~~Nd~~D~~iD~~~~RT~~RPl--- 80 (305)
T Consensus 5 ~~~~l~~l~~~SRP~~Winta~p~~~g~~l~~~~~~~~~~~~~i~flvP~Nl~mYGINDvfD~esD~~NPRKgg~Ega~l 84 (291)
T PRK13105 5 MMELIRQILLSSRPLSWVNTAYPFAAAYLLTAGEIDWLFWLGTVFFLIPYNLAMYGINDVFDYESDLRNPRKGGVEGAVL 84 (291)
T ss_pred HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 88999999984687311032268999999972545589999999999878888734203332131023888788663014
Q ss_pred HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHCCCCCCHHHHHHHHHHHHHHEEEC
Q ss_conf 65304789899988887766899988634458999999988865444544---310266560588887766422110132
Q gi|254780360|r 81 PLGQISPWEAWVLGVSLAVSSIVIMGLAINWVSATLLFMSIFCYVVIYTI---WLKRFTPQNIVIGGIAGAIPPMIGWAS 157 (305)
Q Consensus 81 ~~g~is~~~a~~~~~~l~~~~~~~l~~~~n~~~~~l~~~~~~~y~~iYtp---~lKR~t~~~~~~~~i~ga~~~l~g~~a 157 (305)
T Consensus 85 ~~~~~--r~~l~~~~~~~~pfl~~l~~~~~~~~~~~l~~~~f~-~vaYSaPpLRFKe~P~LDS~ss~~~~v~pa~~~~~l 161 (291)
T PRK13105 85 PKASH--RPLLWASAITTIPFLVVLVIAGTWMSWAVLAVSVFA-VIAYSAAGLRFKERPFLDALTSSTHFTSPALYGLTL 161 (291)
T ss_pred CCCCC--CHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH-HHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 70015--503599999866899999981778899999999999-850258860346665532112211564489999998
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHCCCCCHH
Q ss_conf 3688566321114788889999999998653566664101335124338877899743-456898998764210221089
Q gi|254780360|r 158 VTGDVSIASLVMFLIIFLWTPPHFWSLALLCKDDYQKASIPMLPNVVTDRTTKMHILI-YTVLTSIVGVLPTMLGFASVT 236 (305)
Q Consensus 158 ~~~~~~~~~~~l~~~~~~W~~~~~~~~a~~d~~dd~k~Gikslpv~~G~k~t~~~i~~-ysi~~~llsll~~~~~~~g~~ 236 (305)
T Consensus 162 ~g~~~~~~~~~~~~a~~lW~masHaF~AvqDI~~DR~aGI~siAT~lGargt~~~a~~~y~~Aa~l~~~----~~~--P~ 235 (291)
T PRK13105 162 AGATFTPALWIALGAFFLWGMASQAFGAVQDVVADREAGLSSIATVLGARGTVRLAVLLYLLAAVLMLF----TPW--PG 235 (291)
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHH----CCC--CH
T ss_conf 078888147999999999999987740335665014319132343542158999999999999999985----688--18
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH---HHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999999950488997899---999879899999999999998
Q gi|254780360|r 237 YGIIVFFLGYHFTLWAWRTFLCKEDKDIRVT---KKLFLESITYLFVLFTILMVD 288 (305)
Q Consensus 237 yli~ali~~~~~l~~a~~~~~~~~~~~~k~a---~klF~~S~~yl~ilfl~liid 288 (305)
T Consensus 236 ~~aa~~--~l~yl~~~~~~~-~~~d~~~e~Anr~wr~fl~ln~~~G~vvt~~Li~ 287 (291)
T PRK13105 236 WIAAIL--ALPYILNAARFW-NITDTDAEQANRGWKRFLWLNYLVGFVVTMLLIA 287 (291)
T ss_pred HHHHHH--HHHHHHHHHHHC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999--999999872650-4778998888667999999999999999999999