HHsearch alignment for GI: 254780360 and conserved domain: TIGR01475

>TIGR01475 ubiA_other 4-hydroxybenzoate polyprenyltransferase, putative; InterPro: IPR006371 A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in IPR006370 from INTERPRO. Protoheme IX farnesyltransferase (heme O synthase) (IPR006369 from INTERPRO) is more distantly related. Because no species appears to have both this protein and a member of IPR006370 from INTERPRO, it is likely that this family of sequences represent 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, and the Chlamydias..
Probab=100.00  E-value=0  Score=380.17  Aligned_cols=279  Identities=19%  Similarity=0.261  Sum_probs=234.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC----------CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCHHHH
Q ss_conf             3799999962689999999999999970898----------998999999999999999999886330661201371210
Q gi|254780360|r    7 RLNFFIVLLKPRVMSLAIYTAFVGIVLAPGH----------ISVLKSVISIFAIAMGAGASGALNMYYDADIDKMMARTA   76 (305)
Q Consensus         7 k~~~y~~L~kp~~~~~~~~~~~~g~~la~~~----------~~~~~~~~~~~~~~l~~~a~~~~Nd~~D~~iD~~~~RT~   76 (305)
T Consensus         1 k~~~il~l~k~ehT~FaLPFa~~g~lla~~~~N~t~Plfs~~~~~~l~Li~~A~~~ARt~aM~~Nr~~D~~ID~~NPRtk   80 (301)
T TIGR01475         1 KIKDILELIKFEHTLFALPFAYAGALLAAKLANDTAPLFSLPSLKTLILILVALVSARTAAMAFNRIIDEEIDAKNPRTK   80 (301)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCCCC
T ss_conf             95689889999999856999999999970288986320466549999999999999999975652230631234686978


Q ss_pred             CHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHEEE
Q ss_conf             70566530478989998888776689998863445899999998886544454431026656058888776642211013
Q gi|254780360|r   77 SRPIPLGQISPWEAWVLGVSLAVSSIVIMGLAINWVSATLLFMSIFCYVVIYTIWLKRFTPQNIVIGGIAGAIPPMIGWA  156 (305)
Q Consensus        77 ~RPl~~g~is~~~a~~~~~~l~~~~~~~l~~~~n~~~~~l~~~~~~~y~~iYtp~lKR~t~~~~~~~~i~ga~~~l~g~~  156 (305)
T Consensus        81 ~R~lv~G~is~~ea~~~~~~~-~~lF~~~~~f~N~laf~Lsp~v~l~-~~~Y-P~~KRfT~l~H~~LG~~~glA~~~G~~  157 (301)
T TIGR01475        81 NRPLVSGKISKKEARTLIILS-LALFLIASYFLNPLAFILSPVVLLV-LIIY-PYLKRFTALCHLVLGSVLGLAPLAGWV  157 (301)
T ss_pred             CCCCCCCCCCHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH-HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             897877643399999999999-9999999999989999986999999-9970-227776486779999999999877266


Q ss_pred             CCCCCCC--------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             2368856--------63211147888899999999986535666641013351243388778997434568989987642
Q gi|254780360|r  157 SVTGDVS--------IASLVMFLIIFLWTPPHFWSLALLCKDDYQKASIPMLPNVVTDRTTKMHILIYTVLTSIVGVLPT  228 (305)
Q Consensus       157 a~~~~~~--------~~~~~l~~~~~~W~~~~~~~~a~~d~~dd~k~Gikslpv~~G~k~t~~~i~~ysi~~~llsll~~  228 (305)
T Consensus       158 av~~~~~~sl~~~~~~~a~~l~~~~~fW~aGFD~iY~~qD~eFD~~~gL~Sipa~fG~~~aL~ia~~~h~~~~~~~ll~~  237 (301)
T TIGR01475       158 AVIGEISISLDELLLLVAVLLGIGVVFWVAGFDVIYAIQDYEFDKKNGLKSIPARFGVKAALKIASLSHVITFVLLLLLG  237 (301)
T ss_pred             HCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCEEEHHHHCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             50377310166599999999999999999999998752483544450865421330558999999999999999999999


Q ss_pred             HCCCC---CHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             10221---089999999999999999999995048899789999987989999999999999866
Q gi|254780360|r  229 MLGFA---SVTYGIIVFFLGYHFTLWAWRTFLCKEDKDIRVTKKLFLESITYLFVLFTILMVDHL  290 (305)
Q Consensus       229 ~~~~~---g~~yli~ali~~~~~l~~a~~~~~~~~~~~~k~a~klF~~S~~yl~ilfl~liid~~  290 (305)
T Consensus       238 ~~~~~~~lg~~~~l~~~~~~~~l~-y~H~i~~~-G~~~~~~~~~FF~~N~~~si~~l~~~~~d~~  300 (301)
T TIGR01475       238 FYVGEKALGYIALLALLLIGLILV-YEHSIVDP-GKDLSKIQRAFFTVNGFLSIIFLIGVIIDVL  300 (301)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             997026899999999999999999-88877437-8567689899876989999999999999872