HHsearch alignment for GI: 254780360 and conserved domain: TIGR01475
>TIGR01475 ubiA_other 4-hydroxybenzoate polyprenyltransferase, putative; InterPro: IPR006371 A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in IPR006370 from INTERPRO. Protoheme IX farnesyltransferase (heme O synthase) (IPR006369 from INTERPRO) is more distantly related. Because no species appears to have both this protein and a member of IPR006370 from INTERPRO, it is likely that this family of sequences represent 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, and the Chlamydias..
Probab=100.00 E-value=0 Score=380.17 Aligned_cols=279 Identities=19% Similarity=0.261 Sum_probs=234.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC----------CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCHHHH
Q ss_conf 3799999962689999999999999970898----------998999999999999999999886330661201371210
Q gi|254780360|r 7 RLNFFIVLLKPRVMSLAIYTAFVGIVLAPGH----------ISVLKSVISIFAIAMGAGASGALNMYYDADIDKMMARTA 76 (305)
Q Consensus 7 k~~~y~~L~kp~~~~~~~~~~~~g~~la~~~----------~~~~~~~~~~~~~~l~~~a~~~~Nd~~D~~iD~~~~RT~ 76 (305)
T Consensus 1 k~~~il~l~k~ehT~FaLPFa~~g~lla~~~~N~t~Plfs~~~~~~l~Li~~A~~~ARt~aM~~Nr~~D~~ID~~NPRtk 80 (301)
T TIGR01475 1 KIKDILELIKFEHTLFALPFAYAGALLAAKLANDTAPLFSLPSLKTLILILVALVSARTAAMAFNRIIDEEIDAKNPRTK 80 (301)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCCCC
T ss_conf 95689889999999856999999999970288986320466549999999999999999975652230631234686978
Q ss_pred CHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHEEE
Q ss_conf 70566530478989998888776689998863445899999998886544454431026656058888776642211013
Q gi|254780360|r 77 SRPIPLGQISPWEAWVLGVSLAVSSIVIMGLAINWVSATLLFMSIFCYVVIYTIWLKRFTPQNIVIGGIAGAIPPMIGWA 156 (305)
Q Consensus 77 ~RPl~~g~is~~~a~~~~~~l~~~~~~~l~~~~n~~~~~l~~~~~~~y~~iYtp~lKR~t~~~~~~~~i~ga~~~l~g~~ 156 (305)
T Consensus 81 ~R~lv~G~is~~ea~~~~~~~-~~lF~~~~~f~N~laf~Lsp~v~l~-~~~Y-P~~KRfT~l~H~~LG~~~glA~~~G~~ 157 (301)
T TIGR01475 81 NRPLVSGKISKKEARTLIILS-LALFLIASYFLNPLAFILSPVVLLV-LIIY-PYLKRFTALCHLVLGSVLGLAPLAGWV 157 (301)
T ss_pred CCCCCCCCCCHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH-HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 897877643399999999999-9999999999989999986999999-9970-227776486779999999999877266
Q ss_pred CCCCCCC--------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 2368856--------63211147888899999999986535666641013351243388778997434568989987642
Q gi|254780360|r 157 SVTGDVS--------IASLVMFLIIFLWTPPHFWSLALLCKDDYQKASIPMLPNVVTDRTTKMHILIYTVLTSIVGVLPT 228 (305)
Q Consensus 157 a~~~~~~--------~~~~~l~~~~~~W~~~~~~~~a~~d~~dd~k~Gikslpv~~G~k~t~~~i~~ysi~~~llsll~~ 228 (305)
T Consensus 158 av~~~~~~sl~~~~~~~a~~l~~~~~fW~aGFD~iY~~qD~eFD~~~gL~Sipa~fG~~~aL~ia~~~h~~~~~~~ll~~ 237 (301)
T TIGR01475 158 AVIGEISISLDELLLLVAVLLGIGVVFWVAGFDVIYAIQDYEFDKKNGLKSIPARFGVKAALKIASLSHVITFVLLLLLG 237 (301)
T ss_pred HCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCEEEHHHHCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 50377310166599999999999999999999998752483544450865421330558999999999999999999999
Q ss_pred HCCCC---CHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 10221---089999999999999999999995048899789999987989999999999999866
Q gi|254780360|r 229 MLGFA---SVTYGIIVFFLGYHFTLWAWRTFLCKEDKDIRVTKKLFLESITYLFVLFTILMVDHL 290 (305)
Q Consensus 229 ~~~~~---g~~yli~ali~~~~~l~~a~~~~~~~~~~~~k~a~klF~~S~~yl~ilfl~liid~~ 290 (305)
T Consensus 238 ~~~~~~~lg~~~~l~~~~~~~~l~-y~H~i~~~-G~~~~~~~~~FF~~N~~~si~~l~~~~~d~~ 300 (301)
T TIGR01475 238 FYVGEKALGYIALLALLLIGLILV-YEHSIVDP-GKDLSKIQRAFFTVNGFLSIIFLIGVIIDVL 300 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 997026899999999999999999-88877437-8567689899876989999999999999872