Query gi|254780360|ref|YP_003064773.1| protoheme IX farnesyltransferase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 305
No_of_seqs 135 out of 2742
Neff 7.3
Searched_HMMs 13730
Date Wed Jun 1 03:50:57 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780360.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1t95a1 a.5.8.1 (A:87-161) Hyp 17.2 12 0.00084 14.5 -0.3 16 70-86 31-46 (75)
2 d1rqja_ a.128.1.1 (A:) Farnesy 15.8 26 0.0019 12.4 12.1 67 39-108 62-128 (299)
3 d1v74a_ d.243.1.1 (A:) Colicin 10.5 33 0.0024 11.7 0.5 14 77-90 2-15 (107)
4 d1r5ba2 b.44.1.1 (A:555-622) E 6.8 50 0.0036 10.7 0.1 15 65-79 42-56 (68)
5 d1v4ea_ a.128.1.1 (A:) Octopre 6.0 59 0.0043 10.3 7.4 64 42-110 54-117 (280)
6 d2axtk1 f.23.36.1 (K:10-46) Ph 5.0 71 0.0052 9.8 1.2 15 165-179 19-33 (37)
7 d1vpua_ g.34.1.1 (A:) HIV-1 VP 4.4 68 0.005 9.9 -0.4 27 67-93 2-28 (45)
8 d1iyjb1 a.170.1.1 (B:2403-2598 4.4 82 0.006 9.4 1.1 31 61-92 16-56 (196)
9 d1p94a_ a.43.1.3 (A:) Plasmid 4.4 74 0.0054 9.7 -0.3 15 66-84 19-33 (76)
10 d1eysh2 f.23.10.1 (H:7-43) Pho 4.4 83 0.0061 9.4 2.8 27 171-199 9-35 (37)
No 1
>d1t95a1 a.5.8.1 (A:87-161) Hypothetical protein AF0491, middle domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=17.21 E-value=12 Score=14.48 Aligned_cols=16 Identities=31% Similarity=0.505 Sum_probs=11.9
Q ss_pred CCCHHHHCHHHHHHHCC
Q ss_conf 13712107056653047
Q gi|254780360|r 70 KMMARTASRPIPLGQIS 86 (305)
Q Consensus 70 ~~~~RT~~RPl~~g~is 86 (305)
..||+| +||.|.++|.
T Consensus 31 ~VnP~T-~~P~p~~rIE 46 (75)
T d1t95a1 31 TIDPRT-NAPHPPSRIE 46 (75)
T ss_dssp EEBTTT-TBCCCHHHHH
T ss_pred CCCCCC-CCCCCHHHHH
T ss_conf 569988-9989899999
No 2
>d1rqja_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Escherichia coli [TaxId: 562]}
Probab=15.81 E-value=26 Score=12.42 Aligned_cols=67 Identities=18% Similarity=-0.004 Sum_probs=43.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCHHHHCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9899999999999999999988633066120137121070566530478989998888776689998863
Q gi|254780360|r 39 SVLKSVISIFAIAMGAGASGALNMYYDADIDKMMARTASRPIPLGQISPWEAWVLGVSLAVSSIVIMGLA 108 (305)
Q Consensus 39 ~~~~~~~~~~~~~l~~~a~~~~Nd~~D~~iD~~~~RT~~RPl~~g~is~~~a~~~~~~l~~~~~~~l~~~ 108 (305)
+.....-...+.=+..+++-+..|+.|.|-|. .| +.+|=.-.+-....|...+-.+...++-.+.-.
T Consensus 62 ~~~~~~~~A~aiEllH~asLiHDDI~d~d~~~--~R-RG~pt~h~~~G~~~AIl~Gd~l~~~a~~~l~~~ 128 (299)
T d1rqja_ 62 STNTLDAPAAAVECIHAYSLIHDDLPAMDDDD--LR-RGLPTCHVKFGEANAILAGDALQTLAFSILSDA 128 (299)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTSTTTTCCC--EE-TTEECHHHHHCHHHHHHHHHHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH--CC-CCCCCCEEEECCCHHHHHCCHHHHHHHHHHHHC
T ss_conf 60668998999999999999972541345421--12-455431034075433552104788999999867
No 3
>d1v74a_ d.243.1.1 (A:) Colicin D nuclease domain {Escherichia coli [TaxId: 562]}
Probab=10.54 E-value=33 Score=11.74 Aligned_cols=14 Identities=21% Similarity=0.373 Sum_probs=11.1
Q ss_pred CHHHHHHHCCHHHH
Q ss_conf 70566530478989
Q gi|254780360|r 77 SRPIPLGQISPWEA 90 (305)
Q Consensus 77 ~RPl~~g~is~~~a 90 (305)
+-||++|++|.++-
T Consensus 2 ~~pLds~~ftrkqL 15 (107)
T d1v74a_ 2 NDPLDSGRFSRKQL 15 (107)
T ss_dssp CCTTCBTTBCHHHH
T ss_pred CCCCCCCCCHHHHH
T ss_conf 98765762509987
No 4
>d1r5ba2 b.44.1.1 (A:555-622) Eukaryotic peptide chain release factor ERF2, C-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}
Probab=6.81 E-value=50 Score=10.71 Aligned_cols=15 Identities=20% Similarity=0.304 Sum_probs=7.3
Q ss_pred CCCHHCCCHHHHCHH
Q ss_conf 661201371210705
Q gi|254780360|r 65 DADIDKMMARTASRP 79 (305)
Q Consensus 65 D~~iD~~~~RT~~RP 79 (305)
+.++|+..++++.||
T Consensus 42 ~~~~~ktg~~~k~~P 56 (68)
T d1r5ba2 42 LHKLDKTNRKSKKPP 56 (68)
T ss_dssp CCCCCSSCCCCSSCC
T ss_pred HHHHHCCCCEECCCC
T ss_conf 777732798704497
No 5
>d1v4ea_ a.128.1.1 (A:) Octoprenyl-diphosphate synthase {Thermotoga maritima [TaxId: 2336]}
Probab=5.98 E-value=59 Score=10.25 Aligned_cols=64 Identities=17% Similarity=-0.038 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCHHHHCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999998863306612013712107056653047898999888877668999886344
Q gi|254780360|r 42 KSVISIFAIAMGAGASGALNMYYDADIDKMMARTASRPIPLGQISPWEAWVLGVSLAVSSIVIMGLAIN 110 (305)
Q Consensus 42 ~~~~~~~~~~l~~~a~~~~Nd~~D~~iD~~~~RT~~RPl~~g~is~~~a~~~~~~l~~~~~~~l~~~~n 110 (305)
...-...+.=+..+++.+..|++|.+- .| +.+|-.-.+-....|...+-.+...++-.+.-..+
T Consensus 54 ~~~~~AaaiEliH~asLIhDDi~D~s~----~R-RG~pt~h~~~g~~~ail~gd~l~~~a~~~l~~~~~ 117 (280)
T d1v4ea_ 54 DAISSLAALELVHLASLLHDDVIDGAR----FR-RGKETINFMYGDKAAVAAGDLVLVSAFHTVEEIGN 117 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCS----EE-TTEECHHHHHCHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCC----CC-CCCCHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 999999999999999998642765212----44-44540121121011221488877765301122100
No 6
>d2axtk1 f.23.36.1 (K:10-46) Photosystem II reaction center protein K, PsbK {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=4.98 E-value=71 Score=9.80 Aligned_cols=15 Identities=13% Similarity=0.693 Sum_probs=9.4
Q ss_pred CCCCHHHHHHHHHHH
Q ss_conf 321114788889999
Q gi|254780360|r 165 ASLVMFLIIFLWTPP 179 (305)
Q Consensus 165 ~~~~l~~~~~~W~~~ 179 (305)
.|..++...|.||.+
T Consensus 19 IPv~f~lLafVWQAa 33 (37)
T d2axtk1 19 IPVLFLALAFVWQAA 33 (37)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
T ss_conf 999999999999987
No 7
>d1vpua_ g.34.1.1 (A:) HIV-1 VPU cytoplasmic domain {Human immunodeficiency virus type 1 [TaxId: 11676]}
Probab=4.45 E-value=68 Score=9.90 Aligned_cols=27 Identities=26% Similarity=0.302 Sum_probs=18.8
Q ss_pred CHHCCCHHHHCHHHHHHHCCHHHHHHH
Q ss_conf 120137121070566530478989998
Q gi|254780360|r 67 DIDKMMARTASRPIPLGQISPWEAWVL 93 (305)
Q Consensus 67 ~iD~~~~RT~~RPl~~g~is~~~a~~~ 93 (305)
+||+..+|-+.|.--||.=|-...=-+
T Consensus 2 kIdrLi~RIrERAEDSGNESeGD~eEL 28 (45)
T d1vpua_ 2 QIDRLIDRITERAEDSGNESEGDQEEL 28 (45)
T ss_dssp CHHHHHHHHHHTTCHHHHTTTTHHHHT
T ss_pred CHHHHHHHHHHHCCCCCCCCCCCHHHH
T ss_conf 289999999987025777775669999
No 8
>d1iyjb1 a.170.1.1 (B:2403-2598) BRCA2 helical domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=4.42 E-value=82 Score=9.42 Aligned_cols=31 Identities=29% Similarity=0.188 Sum_probs=20.8
Q ss_pred HHHHCCCHHCCCHHHHCHHHH----------HHHCCHHHHHH
Q ss_conf 633066120137121070566----------53047898999
Q gi|254780360|r 61 NMYYDADIDKMMARTASRPIP----------LGQISPWEAWV 92 (305)
Q Consensus 61 Nd~~D~~iD~~~~RT~~RPl~----------~g~is~~~a~~ 92 (305)
-|..|..|+++ +|-.-||.| .+|+|.+++.-
T Consensus 16 r~~q~~ri~~k-~rq~~~P~~gsl~~~k~s~~~RisLr~aV~ 56 (196)
T d1iyjb1 16 RDLQDIRIKNK-ERHHLCPQPGSLYLTKSSTLPRISLQAAVG 56 (196)
T ss_dssp HHHHHHHHHHH-TTSCCCCCCCSSTTTTSSCSCCBCHHHHHT
T ss_pred HHHHHHHHHHC-CCCCCCCCCCCEEEECCCCCCCHHHHHHHC
T ss_conf 99999887642-023247756754565136898257999856
No 9
>d1p94a_ a.43.1.3 (A:) Plasmid partition protein ParG {Salmonella enterica [TaxId: 28901]}
Probab=4.38 E-value=74 Score=9.70 Aligned_cols=15 Identities=20% Similarity=0.725 Sum_probs=0.0
Q ss_pred CCHHCCCHHHHCHHHHHHH
Q ss_conf 6120137121070566530
Q gi|254780360|r 66 ADIDKMMARTASRPIPLGQ 84 (305)
Q Consensus 66 ~~iD~~~~RT~~RPl~~g~ 84 (305)
||+|+.+. .|.|+|+
T Consensus 19 RdLekvv~----~p~psgk 33 (76)
T d1p94a_ 19 RDLERVVT----APVSSGK 33 (76)
T ss_dssp TTTCGGGS----CCSSTTC
T ss_pred CHHHHHHC----CCCCCCC
T ss_conf 11889864----8898764
No 10
>d1eysh2 f.23.10.1 (H:7-43) Photosystem II reaction centre subunit H, transmembrane region {Thermochromatium tepidum [TaxId: 1050]}
Probab=4.37 E-value=83 Score=9.38 Aligned_cols=27 Identities=19% Similarity=0.517 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 78888999999999865356666410133
Q gi|254780360|r 171 LIIFLWTPPHFWSLALLCKDDYQKASIPM 199 (305)
Q Consensus 171 ~~~~~W~~~~~~~~a~~d~~dd~k~Giks 199 (305)
.+-.+|.+ |-.+-..-+.+|++.|.|.
T Consensus 9 ~ly~Fw~F--FagLi~YL~rE~~REGyPl 35 (37)
T d1eysh2 9 TIWAFWLF--FFGLIIYLRREDKREGYPL 35 (37)
T ss_dssp HHHHHHHH--HHHHHHHHHHHTTSSSCSC
T ss_pred HHHHHHHH--HHHHHHHHHHCCCCCCCCC
T ss_conf 99999999--9999999972354357978
Done!