RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddA 21,609 sequences; 6,263,737 total letters Searching..................................................done Query= gi|254780360|ref|YP_003064773.1| protoheme IX farnesyltransferase [Candidatus Liberibacter asiaticus str. psy62] (305 letters) >gnl|CDD|30458 COG0109, CyoE, Polyprenyltransferase (cytochrome oxidase assembly factor) [Posttranslational modification, protein turnover, chaperones]. Length = 304 Score = 273 bits (699), Expect = 5e-74 Identities = 136/282 (48%), Positives = 188/282 (66%), Gaps = 4/282 (1%) Query: 11 FIVLLKPRVMSLAIYTAFVGIVLAP-GHISVLKSVISIFAIAMGAGASGALNMYYDADID 69 ++ L KPRV+SL + TAF G++LAP G I+ L ++++ A+GAG +GA NMY D DID Sbjct: 21 YLQLTKPRVISLLLITAFAGMLLAPRGSINPLLLLLTLLGGALGAGGAGAFNMYIDRDID 80 Query: 70 KMMARTASRPIPLGQISPWEAWVLGVSLAVSSIVIMGLAINWVSATLLFMSIFCYVVIYT 129 +M RT RP+ G ISP EA G+ L V+ ++ +N ++A L IF YVV+YT Sbjct: 81 ALMERTRKRPLVTGLISPREALAFGLVLGVAGFSLLWFLVNLLAAVLGLFGIFFYVVVYT 140 Query: 130 IWLKRFTPQNIVIGGIAGAIPPMIGWASVTGDVSIASLVMFLIIFLWTPPHFWSLALLCK 189 +WLKR TPQNIVIGG AGA+PP+IGWA+VTG +S+ ++++F IIFLWTPPHFW+LAL K Sbjct: 141 LWLKRRTPQNIVIGGFAGAMPPLIGWAAVTGSISLGAILLFAIIFLWTPPHFWALALKYK 200 Query: 190 DDYQKASIPMLPNVVTDRTTKMHILIYTVLTSIVGVLPTMLGFASVTYGIIVFFLGYHFT 249 DDY+ A IPMLP V +R TK IL+YT+ + V +L +LG+ Y ++ LG F Sbjct: 201 DDYKAAGIPMLPVVKGERRTKRQILLYTLALAPVSLLLALLGYVGYLYLVVATLLGAWFL 260 Query: 250 LWAWRTFLCKEDKDIRVTKKLFLESITYLFVLFTILMVDHLI 291 AW+ + D + +KLF SI YL +LF L++D L+ Sbjct: 261 ALAWKLYR---KDDRKWARKLFKYSIIYLALLFVALLIDSLL 299 >gnl|CDD|36594 KOG1380, KOG1380, KOG1380, Heme A farnesyltransferase [Coenzyme transport and metabolism]. Length = 409 Score = 140 bits (353), Expect = 6e-34 Identities = 72/281 (25%), Positives = 134/281 (47%), Gaps = 5/281 (1%) Query: 11 FIVLLKPRVMSLAIYTAFVGIVLAPGHISVLKSVISIFAIAMGAGASGALNMYYDADIDK 70 ++ L KPR+ L + T G LAPG S + + + + ++ A+N ++ D Sbjct: 97 YLELSKPRLTMLVVLTTMTGYALAPGPFSFPTLLYTTVGTGLCSASANAINQIFEPPFDS 156 Query: 71 MMARTASRPIPLGQISPWEAWVLGVSLAVSSIVIMGLAINWVSATLLFMSIFCYVVIYTI 130 M RT +RP+ G+ISP A + + ++ +N ++A L +IF Y +YT Sbjct: 157 QMKRTQNRPLVRGRISPLHAVTFATLTGTAGVSLLAFGVNPLAAALGAGNIFLYAGVYTP 216 Query: 131 WLKRFTPQNIVIGGIAGAIPPMIGWASVTGDVSIASLVMFLIIFLWTPPHFWSLALLCKD 190 LKR N +G + GAIPP++GWA+ +G + ++++ I++ W PHF +L+ ++ Sbjct: 217 -LKRIHIINTWVGAVVGAIPPLMGWAAASGLLDPGAMILAGILYAWQFPHFNALSWNLRN 275 Query: 191 DYQKASIPMLPNVVTDRTTKMHILIYTVLTSIVGVLPTMLGFASVTYGIIVFFLGYHFTL 250 DY KA M+ V + L Y++ + + + I L + Sbjct: 276 DYSKAGYRMM-AVTNPGLCRRVALRYSLAFLPLSYAAPSTDLTTWWFAIESLPLNAYLAY 334 Query: 251 WAWRTFLCKEDKDIRVTKKLFLESITYLFVLFTILMVDHLI 291 A++ + D+D +KLF S+ +L +L ++++ Sbjct: 335 LAFKFY---RDRDYHNARKLFFASLLHLPLLMLLMLIHKKG 372 >gnl|CDD|144580 pfam01040, UbiA, UbiA prenyltransferase family. Length = 258 Score = 82.5 bits (204), Expect = 1e-16 Identities = 53/253 (20%), Positives = 105/253 (41%), Gaps = 3/253 (1%) Query: 21 SLAIYTAFVGIVLAPGHISVLKSVISIFAIAMGAGASG-ALNMYYDADIDKMMARTASRP 79 LA+ G+ LA G L ++ + + A+G LN Y+D +ID SRP Sbjct: 2 PLALLPVLAGLALAAGGALDLLLLLLLLLALLLLQAAGNVLNDYFDREIDADNPNKPSRP 61 Query: 80 IPLGQISPWEAWVLGVSLAVSSIVIMGLAINWVSATLLFMSIFCYVVIYTIWLKRFTPQN 139 +P G+ISP EA +L ++L + +++ L + + L + + ++ LKR Sbjct: 62 LPSGRISPREALLLALALLLLG-LLLALLLGPLLLLLGLLGLLLGLLYSLPRLKRRPLLG 120 Query: 140 IVIGGIAGAIPPMIGWASVTGDVSIASLVMFLIIFLWTPPHFWSLALLCKDDYQKASIPM 199 ++ G+A + ++G +V GD+ L++ L +FL + + + +KA Sbjct: 121 ELVVGLAFGLLILLGAYAVGGDIPSPLLLLALPLFLLGLAILLANDIRDVEGDRKAGRRT 180 Query: 200 LPNVVTDRTTKMHILIYTVLTSIVGVLPTMLGFASVTYGIIVFFLGYHFTLWAWRTFLCK 259 LP + ++ + + ++ L +L A + + V Sbjct: 181 LPVRLGEKRALALLALLLAAALLLLAL-LLLLLAPLLLLLAVLLAALALLRALRLLRRRN 239 Query: 260 EDKDIRVTKKLFL 272 ++ R+ L L Sbjct: 240 PEEPARLALFLAL 252 >gnl|CDD|30731 COG0382, UbiA, 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]. Length = 289 Score = 72.6 bits (178), Expect = 1e-13 Identities = 62/281 (22%), Positives = 130/281 (46%), Gaps = 8/281 (2%) Query: 11 FIVLLKPRVMSLAIYTAFVGIVLAPGHISVLKSVISIFAIAMGAGASG-ALNMYYDADID 69 + L +P L + A +G++LA + LK ++ F A ++G +N D +ID Sbjct: 16 LLRLDRPIFNLLLLLPALLGLLLAASGLPSLKLLLLAFLAFFLARSAGYVINDLADREID 75 Query: 70 KMMARTASRPIPLGQISPWEAWVLGVSLAVSSIVIMGLAINWVSATLLFMSIFCYVVIYT 129 ++ RT +RP+P G++S EA +L + L + + + L +N ++ L ++ + + Sbjct: 76 RINPRTKNRPLPSGRVSVKEALLLAILLLLLGLALA-LLLNPLAFLLSLAALV--LALAY 132 Query: 130 IWLKRFTPQNIVIGGIAGAIPPMIGWASVTGDVSIASLVMFLIIFLWTPPHFWSLALLCK 189 +LKRFT ++ G+A + + G A+V G + + + ++ L LWT + A+ Sbjct: 133 PFLKRFTFLPQLVLGLAFGLGALAGAAAVGGSLPLLAWLLLLAAILWTLGYDIIYAIQDI 192 Query: 190 DDYQKASIPMLPNVVTDRTTKMHILIYTVLTSIVGVLPTMLGFASVTYGIIVFFLGYHFT 249 + +KA + LP + + L+ + ++++ +L + G + Y + + Sbjct: 193 EGDRKAGLKSLPVLFGIKKALALALLLLLASALLVLLGLLAGLLGLIYLLGLLVAALLL- 251 Query: 250 LWAWRTFLCKEDKDIRVTKKLFLESITYLFVLFTILMVDHL 290 L + +D LF ++ +LF L++ L Sbjct: 252 ---LYQILIVDVRDPPACFALFDVNLLLGLLLFIGLILAVL 289 >gnl|CDD|36595 KOG1381, KOG1381, KOG1381, Para-hydroxybenzoate-polyprenyl transferase [Coenzyme transport and metabolism]. Length = 353 Score = 51.1 bits (122), Expect = 3e-07 Identities = 37/125 (29%), Positives = 66/125 (52%), Gaps = 6/125 (4%) Query: 55 GASGALNMYYDADIDKMMARTASRPIPLGQISPWEAWV-LGVSLAVSSIVIMGLAINWVS 113 GA +N +D D+D + RT RP+ G +SP +A LG L++ ++ L +NW S Sbjct: 117 GAGCTINDLWDKDLDAKVERTKLRPLASGSLSPRQAIGFLGAQLSLGLGIL--LQLNWYS 174 Query: 114 ATLLFMSIFCYVVIYTIWLKRFTPQNIVIGGIAGAIPPMIGWASVTGDVSIASLV-MFLI 172 L S V+ Y + +KRFT ++ G+ ++GW ++ G +S ++++ ++L Sbjct: 175 IALGASS-LALVITYPL-MKRFTYWPQLVLGLTFNWGALLGWCALKGSLSPSAVLPLYLS 232 Query: 173 IFLWT 177 WT Sbjct: 233 GVCWT 237 >gnl|CDD|31763 COG1575, MenA, 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]. Length = 303 Score = 39.8 bits (93), Expect = 0.001 Identities = 32/187 (17%), Positives = 64/187 (34%), Gaps = 12/187 (6%) Query: 1 MYFQVFRLNFFIVLLKPRVMSLAIYTAFVGIVLA---PGHISVLKSVISIFAIAMGAGAS 57 M + + ++ L +P+ + AI VG LA ++L +++++ A + Sbjct: 1 MSQKTSKTQLWLELARPKTLPAAIAPVIVGTALAFWYGKSFNLLVALLALIAAILLQILV 60 Query: 58 GALNMYYDA----DIDKMMARTASRPIPLGQISPWEAWVLGVSLAVSSIVIMGLAINWVS 113 N Y+D D S I + P L + L ++ + Sbjct: 61 NLANDYFDYKKGTDTHGPDRLKQSGLIVRQSMKPALILSLALFLLAGLALLGVILAALSD 120 Query: 114 ATLLFMSIFCYVVIYT-----IWLKRFTPQNIVIGGIAGAIPPMIGWASVTGDVSIASLV 168 +L + + C L I +G G + + + TG +S A L+ Sbjct: 121 WLVLLLGLLCIAAGILYTGGPFPLGYMGLGEIFVGVFFGPLIVLGAYYIQTGRLSWAILL 180 Query: 169 MFLIIFL 175 L + + Sbjct: 181 PSLPVGI 187 >gnl|CDD|38403 KOG3193, KOG3193, KOG3193, K+ channel subunit [Inorganic ion transport and metabolism]. Length = 1087 Score = 34.4 bits (78), Expect = 0.043 Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 3/70 (4%) Query: 214 LIYTVLTSIVGVLPTMLGFASVTYGIIVFFLGYHFT---LWAWRTFLCKEDKDIRVTKKL 270 L++ + L TM S+ Y I+VF+L Y + L FL + + Sbjct: 83 LLWVDFDFKIWFLQTMFACISMVYTILVFYLSYSGSVVRLLINIHFLLELITSFPFIISI 142 Query: 271 FLESITYLFV 280 F+ S+TYL+V Sbjct: 143 FIPSLTYLYV 152 >gnl|CDD|35153 COG5594, COG5594, Uncharacterized integral membrane protein [Function unknown]. Length = 827 Score = 30.3 bits (68), Expect = 0.75 Identities = 25/133 (18%), Positives = 49/133 (36%), Gaps = 16/133 (12%) Query: 153 IGWASVTGDVSIASLVMFLIIFLWTPPHFWSLALLCKDDYQKASIPMLPNVVTDRTTKMH 212 + A+++ L+I LW P + + + + P L ++ D Sbjct: 404 LSRKERLFKRISANILFILLIILWAFP-VAFVGTISNLNTLSSLWPFLKFILKDPPFLAG 462 Query: 213 ILIYTVLTSIVGVLPTMLGFASVTYGIIVFFLGYHFT-LWAWRTFLCKEDKDIRVTKKLF 271 IL G+LPT V +++ + Y L + + +++I V K F Sbjct: 463 IL--------TGLLPT------VALSLLMSIVPYFIRWLSYMQGLVSYSEEEIYVQNKYF 508 Query: 272 LESITYLFVLFTI 284 LF++ T+ Sbjct: 509 AFLFVNLFLVVTL 521 >gnl|CDD|34807 COG5210, COG5210, GTPase-activating protein [General function prediction only]. Length = 496 Score = 29.3 bits (65), Expect = 1.4 Identities = 29/156 (18%), Positives = 55/156 (35%), Gaps = 21/156 (13%) Query: 158 VTGDVSIASLVMFLIIFLWTPPHFWSLALLCKDDYQKASIPMLPNVVTDRTTKMHILIYT 217 V G +A+ L++ FW L L K+ LP + +H + Sbjct: 302 VQGMNFLAAP--LLLVLESEEQAFWCLVKLLKNYG-------LPGYFLKNLSGLHRDLKV 352 Query: 218 VLTSIVGVLPTMLGFASVTYGIIVFFLGYHFTLWAWRTFLCKEDKDI--RVTKKLFLESI 275 + + + P + +++ F F F+ + + R+ LFLE Sbjct: 353 LDDLVEELDPELYEHLLREGVVLLMFAFRWFLTL----FVREFPLEYALRIWDCLFLEGS 408 Query: 276 TYLFVLFT---ILMVDHLIDMKT---VERYFFSSFL 305 + LF L L+ D L+ + + ++ FL Sbjct: 409 SMLFQLALAILKLLRDKLLKLDSDELLDLLLKQLFL 444 >gnl|CDD|143462 cd07144, ALDH_ALD2-YMR170C, Saccharomyces cerevisiae aldehyde dehydrogenase 2 (YMR170c)-like. NAD(P)+-dependent Saccharomyces cerevisiae aldehyde dehydrogenase 2 (YMR170c, ALD5, EC=1.2.1.5) and other similar sequences, are present in this CD. Length = 484 Score = 27.8 bits (62), Expect = 3.5 Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 10/50 (20%) Query: 83 GQISPWE------AWVLGVSLAVSSIVIMGLAINWVSATLLFMSIFCYVV 126 GQI PW AW L +LA + V++ A N T L + F +V Sbjct: 149 GQIIPWNYPLAMAAWKLAPALAAGNTVVIKPAEN----TPLSLLYFANLV 194 >gnl|CDD|36349 KOG1134, KOG1134, KOG1134, Uncharacterized conserved protein [General function prediction only]. Length = 728 Score = 27.2 bits (60), Expect = 5.5 Identities = 19/133 (14%), Positives = 48/133 (36%), Gaps = 17/133 (12%) Query: 153 IGWASVTGDVSIASLVMFLIIFLWTPPHFWSLALLCKDDYQKASIPMLPNVVTDRTTKMH 212 I + + ++ +FL++F W P + L + P L ++ + Sbjct: 351 ISYVERYLRRFLVNVALFLLLFFWIIP-VAFVQALTNLEGLSKVFPFLKPILEMK----- 404 Query: 213 ILIYTVLTSIVGVLPTMLGFASVTYGIIVFFLGYHFTLWA-WRTFLCKEDKDIRVTKKLF 271 + + I G LPT + I + L + + + +++ K + Sbjct: 405 ----FISSVITGFLPT------LALVIFLALLPPFLRYLSKLEGLISRSEEERSALNKYY 454 Query: 272 LESITYLFVLFTI 284 + + +F++ T+ Sbjct: 455 IFLLVNVFLVVTL 467 >gnl|CDD|31329 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]. Length = 249 Score = 27.1 bits (60), Expect = 5.5 Identities = 9/19 (47%), Positives = 10/19 (52%) Query: 145 IAGAIPPMIGWASVTGDVS 163 IAG P G VTG V+ Sbjct: 73 IAGIYKPTSGKVKVTGKVA 91 >gnl|CDD|37661 KOG2450, KOG2450, KOG2450, Aldehyde dehydrogenase [Energy production and conversion]. Length = 501 Score = 26.7 bits (59), Expect = 8.1 Identities = 14/46 (30%), Positives = 19/46 (41%), Gaps = 6/46 (13%) Query: 83 GQISPWE------AWVLGVSLAVSSIVIMGLAINWVSATLLFMSIF 122 GQI PW AW L +LA + V++ A L S+ Sbjct: 163 GQIIPWNFPLLMQAWKLAPALAAGNTVVLKPAEQTPLTALYLASLC 208 Database: CddA Posted date: Feb 4, 2011 9:38 PM Number of letters in database: 6,263,737 Number of sequences in database: 21,609 Lambda K H 0.332 0.143 0.453 Gapped Lambda K H 0.267 0.0664 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21609 Number of Hits to DB: 3,956,173 Number of extensions: 221851 Number of successful extensions: 1105 Number of sequences better than 10.0: 1 Number of HSP's gapped: 1078 Number of HSP's successfully gapped: 155 Length of query: 305 Length of database: 6,263,737 Length adjustment: 93 Effective length of query: 212 Effective length of database: 4,254,100 Effective search space: 901869200 Effective search space used: 901869200 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (22.0 bits) S2: 57 (25.9 bits)