RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254780360|ref|YP_003064773.1| protoheme IX
farnesyltransferase [Candidatus Liberibacter asiaticus str. psy62]
(305 letters)
>gnl|CDD|30458 COG0109, CyoE, Polyprenyltransferase (cytochrome oxidase assembly
factor) [Posttranslational modification, protein
turnover, chaperones].
Length = 304
Score = 273 bits (699), Expect = 5e-74
Identities = 136/282 (48%), Positives = 188/282 (66%), Gaps = 4/282 (1%)
Query: 11 FIVLLKPRVMSLAIYTAFVGIVLAP-GHISVLKSVISIFAIAMGAGASGALNMYYDADID 69
++ L KPRV+SL + TAF G++LAP G I+ L ++++ A+GAG +GA NMY D DID
Sbjct: 21 YLQLTKPRVISLLLITAFAGMLLAPRGSINPLLLLLTLLGGALGAGGAGAFNMYIDRDID 80
Query: 70 KMMARTASRPIPLGQISPWEAWVLGVSLAVSSIVIMGLAINWVSATLLFMSIFCYVVIYT 129
+M RT RP+ G ISP EA G+ L V+ ++ +N ++A L IF YVV+YT
Sbjct: 81 ALMERTRKRPLVTGLISPREALAFGLVLGVAGFSLLWFLVNLLAAVLGLFGIFFYVVVYT 140
Query: 130 IWLKRFTPQNIVIGGIAGAIPPMIGWASVTGDVSIASLVMFLIIFLWTPPHFWSLALLCK 189
+WLKR TPQNIVIGG AGA+PP+IGWA+VTG +S+ ++++F IIFLWTPPHFW+LAL K
Sbjct: 141 LWLKRRTPQNIVIGGFAGAMPPLIGWAAVTGSISLGAILLFAIIFLWTPPHFWALALKYK 200
Query: 190 DDYQKASIPMLPNVVTDRTTKMHILIYTVLTSIVGVLPTMLGFASVTYGIIVFFLGYHFT 249
DDY+ A IPMLP V +R TK IL+YT+ + V +L +LG+ Y ++ LG F
Sbjct: 201 DDYKAAGIPMLPVVKGERRTKRQILLYTLALAPVSLLLALLGYVGYLYLVVATLLGAWFL 260
Query: 250 LWAWRTFLCKEDKDIRVTKKLFLESITYLFVLFTILMVDHLI 291
AW+ + D + +KLF SI YL +LF L++D L+
Sbjct: 261 ALAWKLYR---KDDRKWARKLFKYSIIYLALLFVALLIDSLL 299
>gnl|CDD|36594 KOG1380, KOG1380, KOG1380, Heme A farnesyltransferase [Coenzyme
transport and metabolism].
Length = 409
Score = 140 bits (353), Expect = 6e-34
Identities = 72/281 (25%), Positives = 134/281 (47%), Gaps = 5/281 (1%)
Query: 11 FIVLLKPRVMSLAIYTAFVGIVLAPGHISVLKSVISIFAIAMGAGASGALNMYYDADIDK 70
++ L KPR+ L + T G LAPG S + + + + ++ A+N ++ D
Sbjct: 97 YLELSKPRLTMLVVLTTMTGYALAPGPFSFPTLLYTTVGTGLCSASANAINQIFEPPFDS 156
Query: 71 MMARTASRPIPLGQISPWEAWVLGVSLAVSSIVIMGLAINWVSATLLFMSIFCYVVIYTI 130
M RT +RP+ G+ISP A + + ++ +N ++A L +IF Y +YT
Sbjct: 157 QMKRTQNRPLVRGRISPLHAVTFATLTGTAGVSLLAFGVNPLAAALGAGNIFLYAGVYTP 216
Query: 131 WLKRFTPQNIVIGGIAGAIPPMIGWASVTGDVSIASLVMFLIIFLWTPPHFWSLALLCKD 190
LKR N +G + GAIPP++GWA+ +G + ++++ I++ W PHF +L+ ++
Sbjct: 217 -LKRIHIINTWVGAVVGAIPPLMGWAAASGLLDPGAMILAGILYAWQFPHFNALSWNLRN 275
Query: 191 DYQKASIPMLPNVVTDRTTKMHILIYTVLTSIVGVLPTMLGFASVTYGIIVFFLGYHFTL 250
DY KA M+ V + L Y++ + + + I L +
Sbjct: 276 DYSKAGYRMM-AVTNPGLCRRVALRYSLAFLPLSYAAPSTDLTTWWFAIESLPLNAYLAY 334
Query: 251 WAWRTFLCKEDKDIRVTKKLFLESITYLFVLFTILMVDHLI 291
A++ + D+D +KLF S+ +L +L ++++
Sbjct: 335 LAFKFY---RDRDYHNARKLFFASLLHLPLLMLLMLIHKKG 372
>gnl|CDD|144580 pfam01040, UbiA, UbiA prenyltransferase family.
Length = 258
Score = 82.5 bits (204), Expect = 1e-16
Identities = 53/253 (20%), Positives = 105/253 (41%), Gaps = 3/253 (1%)
Query: 21 SLAIYTAFVGIVLAPGHISVLKSVISIFAIAMGAGASG-ALNMYYDADIDKMMARTASRP 79
LA+ G+ LA G L ++ + + A+G LN Y+D +ID SRP
Sbjct: 2 PLALLPVLAGLALAAGGALDLLLLLLLLLALLLLQAAGNVLNDYFDREIDADNPNKPSRP 61
Query: 80 IPLGQISPWEAWVLGVSLAVSSIVIMGLAINWVSATLLFMSIFCYVVIYTIWLKRFTPQN 139
+P G+ISP EA +L ++L + +++ L + + L + + ++ LKR
Sbjct: 62 LPSGRISPREALLLALALLLLG-LLLALLLGPLLLLLGLLGLLLGLLYSLPRLKRRPLLG 120
Query: 140 IVIGGIAGAIPPMIGWASVTGDVSIASLVMFLIIFLWTPPHFWSLALLCKDDYQKASIPM 199
++ G+A + ++G +V GD+ L++ L +FL + + + +KA
Sbjct: 121 ELVVGLAFGLLILLGAYAVGGDIPSPLLLLALPLFLLGLAILLANDIRDVEGDRKAGRRT 180
Query: 200 LPNVVTDRTTKMHILIYTVLTSIVGVLPTMLGFASVTYGIIVFFLGYHFTLWAWRTFLCK 259
LP + ++ + + ++ L +L A + + V
Sbjct: 181 LPVRLGEKRALALLALLLAAALLLLAL-LLLLLAPLLLLLAVLLAALALLRALRLLRRRN 239
Query: 260 EDKDIRVTKKLFL 272
++ R+ L L
Sbjct: 240 PEEPARLALFLAL 252
>gnl|CDD|30731 COG0382, UbiA, 4-hydroxybenzoate polyprenyltransferase and related
prenyltransferases [Coenzyme metabolism].
Length = 289
Score = 72.6 bits (178), Expect = 1e-13
Identities = 62/281 (22%), Positives = 130/281 (46%), Gaps = 8/281 (2%)
Query: 11 FIVLLKPRVMSLAIYTAFVGIVLAPGHISVLKSVISIFAIAMGAGASG-ALNMYYDADID 69
+ L +P L + A +G++LA + LK ++ F A ++G +N D +ID
Sbjct: 16 LLRLDRPIFNLLLLLPALLGLLLAASGLPSLKLLLLAFLAFFLARSAGYVINDLADREID 75
Query: 70 KMMARTASRPIPLGQISPWEAWVLGVSLAVSSIVIMGLAINWVSATLLFMSIFCYVVIYT 129
++ RT +RP+P G++S EA +L + L + + + L +N ++ L ++ + +
Sbjct: 76 RINPRTKNRPLPSGRVSVKEALLLAILLLLLGLALA-LLLNPLAFLLSLAALV--LALAY 132
Query: 130 IWLKRFTPQNIVIGGIAGAIPPMIGWASVTGDVSIASLVMFLIIFLWTPPHFWSLALLCK 189
+LKRFT ++ G+A + + G A+V G + + + ++ L LWT + A+
Sbjct: 133 PFLKRFTFLPQLVLGLAFGLGALAGAAAVGGSLPLLAWLLLLAAILWTLGYDIIYAIQDI 192
Query: 190 DDYQKASIPMLPNVVTDRTTKMHILIYTVLTSIVGVLPTMLGFASVTYGIIVFFLGYHFT 249
+ +KA + LP + + L+ + ++++ +L + G + Y + +
Sbjct: 193 EGDRKAGLKSLPVLFGIKKALALALLLLLASALLVLLGLLAGLLGLIYLLGLLVAALLL- 251
Query: 250 LWAWRTFLCKEDKDIRVTKKLFLESITYLFVLFTILMVDHL 290
L + +D LF ++ +LF L++ L
Sbjct: 252 ---LYQILIVDVRDPPACFALFDVNLLLGLLLFIGLILAVL 289
>gnl|CDD|36595 KOG1381, KOG1381, KOG1381, Para-hydroxybenzoate-polyprenyl
transferase [Coenzyme transport and metabolism].
Length = 353
Score = 51.1 bits (122), Expect = 3e-07
Identities = 37/125 (29%), Positives = 66/125 (52%), Gaps = 6/125 (4%)
Query: 55 GASGALNMYYDADIDKMMARTASRPIPLGQISPWEAWV-LGVSLAVSSIVIMGLAINWVS 113
GA +N +D D+D + RT RP+ G +SP +A LG L++ ++ L +NW S
Sbjct: 117 GAGCTINDLWDKDLDAKVERTKLRPLASGSLSPRQAIGFLGAQLSLGLGIL--LQLNWYS 174
Query: 114 ATLLFMSIFCYVVIYTIWLKRFTPQNIVIGGIAGAIPPMIGWASVTGDVSIASLV-MFLI 172
L S V+ Y + +KRFT ++ G+ ++GW ++ G +S ++++ ++L
Sbjct: 175 IALGASS-LALVITYPL-MKRFTYWPQLVLGLTFNWGALLGWCALKGSLSPSAVLPLYLS 232
Query: 173 IFLWT 177
WT
Sbjct: 233 GVCWT 237
>gnl|CDD|31763 COG1575, MenA, 1,4-dihydroxy-2-naphthoate octaprenyltransferase
[Coenzyme metabolism].
Length = 303
Score = 39.8 bits (93), Expect = 0.001
Identities = 32/187 (17%), Positives = 64/187 (34%), Gaps = 12/187 (6%)
Query: 1 MYFQVFRLNFFIVLLKPRVMSLAIYTAFVGIVLA---PGHISVLKSVISIFAIAMGAGAS 57
M + + ++ L +P+ + AI VG LA ++L +++++ A +
Sbjct: 1 MSQKTSKTQLWLELARPKTLPAAIAPVIVGTALAFWYGKSFNLLVALLALIAAILLQILV 60
Query: 58 GALNMYYDA----DIDKMMARTASRPIPLGQISPWEAWVLGVSLAVSSIVIMGLAINWVS 113
N Y+D D S I + P L + L ++ +
Sbjct: 61 NLANDYFDYKKGTDTHGPDRLKQSGLIVRQSMKPALILSLALFLLAGLALLGVILAALSD 120
Query: 114 ATLLFMSIFCYVVIYT-----IWLKRFTPQNIVIGGIAGAIPPMIGWASVTGDVSIASLV 168
+L + + C L I +G G + + + TG +S A L+
Sbjct: 121 WLVLLLGLLCIAAGILYTGGPFPLGYMGLGEIFVGVFFGPLIVLGAYYIQTGRLSWAILL 180
Query: 169 MFLIIFL 175
L + +
Sbjct: 181 PSLPVGI 187
>gnl|CDD|38403 KOG3193, KOG3193, KOG3193, K+ channel subunit [Inorganic ion
transport and metabolism].
Length = 1087
Score = 34.4 bits (78), Expect = 0.043
Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
Query: 214 LIYTVLTSIVGVLPTMLGFASVTYGIIVFFLGYHFT---LWAWRTFLCKEDKDIRVTKKL 270
L++ + L TM S+ Y I+VF+L Y + L FL + +
Sbjct: 83 LLWVDFDFKIWFLQTMFACISMVYTILVFYLSYSGSVVRLLINIHFLLELITSFPFIISI 142
Query: 271 FLESITYLFV 280
F+ S+TYL+V
Sbjct: 143 FIPSLTYLYV 152
>gnl|CDD|35153 COG5594, COG5594, Uncharacterized integral membrane protein
[Function unknown].
Length = 827
Score = 30.3 bits (68), Expect = 0.75
Identities = 25/133 (18%), Positives = 49/133 (36%), Gaps = 16/133 (12%)
Query: 153 IGWASVTGDVSIASLVMFLIIFLWTPPHFWSLALLCKDDYQKASIPMLPNVVTDRTTKMH 212
+ A+++ L+I LW P + + + + P L ++ D
Sbjct: 404 LSRKERLFKRISANILFILLIILWAFP-VAFVGTISNLNTLSSLWPFLKFILKDPPFLAG 462
Query: 213 ILIYTVLTSIVGVLPTMLGFASVTYGIIVFFLGYHFT-LWAWRTFLCKEDKDIRVTKKLF 271
IL G+LPT V +++ + Y L + + +++I V K F
Sbjct: 463 IL--------TGLLPT------VALSLLMSIVPYFIRWLSYMQGLVSYSEEEIYVQNKYF 508
Query: 272 LESITYLFVLFTI 284
LF++ T+
Sbjct: 509 AFLFVNLFLVVTL 521
>gnl|CDD|34807 COG5210, COG5210, GTPase-activating protein [General function
prediction only].
Length = 496
Score = 29.3 bits (65), Expect = 1.4
Identities = 29/156 (18%), Positives = 55/156 (35%), Gaps = 21/156 (13%)
Query: 158 VTGDVSIASLVMFLIIFLWTPPHFWSLALLCKDDYQKASIPMLPNVVTDRTTKMHILIYT 217
V G +A+ L++ FW L L K+ LP + +H +
Sbjct: 302 VQGMNFLAAP--LLLVLESEEQAFWCLVKLLKNYG-------LPGYFLKNLSGLHRDLKV 352
Query: 218 VLTSIVGVLPTMLGFASVTYGIIVFFLGYHFTLWAWRTFLCKEDKDI--RVTKKLFLESI 275
+ + + P + +++ F F F+ + + R+ LFLE
Sbjct: 353 LDDLVEELDPELYEHLLREGVVLLMFAFRWFLTL----FVREFPLEYALRIWDCLFLEGS 408
Query: 276 TYLFVLFT---ILMVDHLIDMKT---VERYFFSSFL 305
+ LF L L+ D L+ + + ++ FL
Sbjct: 409 SMLFQLALAILKLLRDKLLKLDSDELLDLLLKQLFL 444
>gnl|CDD|143462 cd07144, ALDH_ALD2-YMR170C, Saccharomyces cerevisiae aldehyde
dehydrogenase 2 (YMR170c)-like. NAD(P)+-dependent
Saccharomyces cerevisiae aldehyde dehydrogenase 2
(YMR170c, ALD5, EC=1.2.1.5) and other similar sequences,
are present in this CD.
Length = 484
Score = 27.8 bits (62), Expect = 3.5
Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 10/50 (20%)
Query: 83 GQISPWE------AWVLGVSLAVSSIVIMGLAINWVSATLLFMSIFCYVV 126
GQI PW AW L +LA + V++ A N T L + F +V
Sbjct: 149 GQIIPWNYPLAMAAWKLAPALAAGNTVVIKPAEN----TPLSLLYFANLV 194
>gnl|CDD|36349 KOG1134, KOG1134, KOG1134, Uncharacterized conserved protein
[General function prediction only].
Length = 728
Score = 27.2 bits (60), Expect = 5.5
Identities = 19/133 (14%), Positives = 48/133 (36%), Gaps = 17/133 (12%)
Query: 153 IGWASVTGDVSIASLVMFLIIFLWTPPHFWSLALLCKDDYQKASIPMLPNVVTDRTTKMH 212
I + + ++ +FL++F W P + L + P L ++ +
Sbjct: 351 ISYVERYLRRFLVNVALFLLLFFWIIP-VAFVQALTNLEGLSKVFPFLKPILEMK----- 404
Query: 213 ILIYTVLTSIVGVLPTMLGFASVTYGIIVFFLGYHFTLWA-WRTFLCKEDKDIRVTKKLF 271
+ + I G LPT + I + L + + + +++ K +
Sbjct: 405 ----FISSVITGFLPT------LALVIFLALLPPFLRYLSKLEGLISRSEEERSALNKYY 454
Query: 272 LESITYLFVLFTI 284
+ + +F++ T+
Sbjct: 455 IFLLVNVFLVVTL 467
>gnl|CDD|31329 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport
system, ATPase component [Carbohydrate transport and
metabolism / Cell envelope biogenesis, outer membrane].
Length = 249
Score = 27.1 bits (60), Expect = 5.5
Identities = 9/19 (47%), Positives = 10/19 (52%)
Query: 145 IAGAIPPMIGWASVTGDVS 163
IAG P G VTG V+
Sbjct: 73 IAGIYKPTSGKVKVTGKVA 91
>gnl|CDD|37661 KOG2450, KOG2450, KOG2450, Aldehyde dehydrogenase [Energy
production and conversion].
Length = 501
Score = 26.7 bits (59), Expect = 8.1
Identities = 14/46 (30%), Positives = 19/46 (41%), Gaps = 6/46 (13%)
Query: 83 GQISPWE------AWVLGVSLAVSSIVIMGLAINWVSATLLFMSIF 122
GQI PW AW L +LA + V++ A L S+
Sbjct: 163 GQIIPWNFPLLMQAWKLAPALAAGNTVVLKPAEQTPLTALYLASLC 208
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.332 0.143 0.453
Gapped
Lambda K H
0.267 0.0664 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 3,956,173
Number of extensions: 221851
Number of successful extensions: 1105
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1078
Number of HSP's successfully gapped: 155
Length of query: 305
Length of database: 6,263,737
Length adjustment: 93
Effective length of query: 212
Effective length of database: 4,254,100
Effective search space: 901869200
Effective search space used: 901869200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 57 (25.9 bits)