RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254780360|ref|YP_003064773.1| protoheme IX
farnesyltransferase [Candidatus Liberibacter asiaticus str. psy62]
         (305 letters)



>2w3y_A Virulence factor, EVF; drosophila pathogen, erwinia
           carotovora, S-palmitoylated protein, lipid-binding
           protein; HET: PLM; 2.00A {Pectobacterium carotovorum
           subsp} (A:)
          Length = 283

 Score = 29.1 bits (65), Expect = 0.75
 Identities = 21/87 (24%), Positives = 32/87 (36%), Gaps = 10/87 (11%)

Query: 34  APGHISVLKSVISIFAIAMGAGASGALNMYYDADIDK----MMARTASRPIPLGQISPWE 89
           AP H+        I      A AS A+N    ++ +K    +    +++ IP     P +
Sbjct: 52  APKHLQKQVKAGRILMERFVAVASAAVNKKAPSNKEKYHYDIWKEVSNQLIPAFFTDPIK 111

Query: 90  AW------VLGVSLAVSSIVIMGLAIN 110
                   V GV +A S I   G  I 
Sbjct: 112 GEQNLNTTVKGVEVAKSVIQFAGNVIA 138


>3dtt_A NADP oxidoreductase; YP_830112.1, structural genomics,
          joint center for structural genomics, JCSG, protein
          structure initiative, PSI-2; HET: NAP; 1.70A
          {Arthrobacter SP} (A:1-218)
          Length = 218

 Score = 28.0 bits (61), Expect = 1.8
 Identities = 1/15 (6%), Positives = 7/15 (46%)

Query: 58 GALNMYYDADIDKMM 72
          G+  +++    + + 
Sbjct: 2  GSDKIHHHHHHENLY 16


>1yyq_A Trichodiene synthase; terpenoid cyclase fold, site-directed
           mutant, pyrophosphate, lyase; 2.10A {Fusarium
           sporotrichioides} PDB: 1yj4_A 1yyr_A* 1yys_A* 1jfa_A
           1jfg_A 2q9y_A* 2q9z_A 2ael_A* 2aek_A* 2aet_A 2ps7_A
           2ps8_A 1kiy_A 1kiz_A 1yyt_A* 1yyu_A* 2ps5_A 2ps4_A
           2ps6_A (A:1-24,A:140-279)
          Length = 164

 Score = 26.7 bits (59), Expect = 3.7
 Identities = 10/44 (22%), Positives = 17/44 (38%)

Query: 119 MSIFCYVVIYTIWLKRFTPQNIVIGGIAGAIPPMIGWASVTGDV 162
           M+   + V  ++W K    +  +   I  AI  M  W     D+
Sbjct: 69  MNGLGHCVGASLWPKEQFNERSLFLEITSAIAQMENWMVWVNDL 112


>1wd3_A Alpha-L-arabinofuranosidase B; beta-sandwich, beta-trefoil,
           hydrolase; HET: NAG; 1.75A {Aspergillus kawachii}
           (A:1-319)
          Length = 319

 Score = 26.6 bits (59), Expect = 4.5
 Identities = 9/26 (34%), Positives = 13/26 (50%)

Query: 40  VLKSVISIFAIAMGAGASGALNMYYD 65
            +K     +AI     ASG+L+ YY 
Sbjct: 230 AVKGGADKWAIRGANAASGSLSTYYS 255


>1cza_N Hexokinase type I; structurally homologous domains; HET: GLC
           G6P ADP; 1.90A {Homo sapiens} (N:478-519,N:658-895)
          Length = 280

 Score = 26.0 bits (57), Expect = 6.2
 Identities = 8/23 (34%), Positives = 11/23 (47%)

Query: 187 LCKDDYQKASIPMLPNVVTDRTT 209
           L K  +  A + MLP+ V   T 
Sbjct: 22  LRKQTHNNAVVKMLPSFVRRTTV 44


>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase,
           translation termination, ATP-binding, cytoplasm,
           hydrolase, membrane; 2.80A {Schizosaccharomyces pombe}
           (A:1-326)
          Length = 326

 Score = 25.9 bits (56), Expect = 6.7
 Identities = 8/51 (15%), Positives = 13/51 (25%), Gaps = 11/51 (21%)

Query: 263 DIRVTKKLFLESITYLFVLFTILMVDHL--------IDMKTVER---YFFS 302
           D+   ++L    I    +     M+D          I            FS
Sbjct: 248 DLMKRRQLDARDIKVFVLDEADNMLDQQGLGDQSMRIKHLLPRNTQIVLFS 298


>3f9m_A Glucokinase; hexokinase IV, alternative splicing, ATP-
           binding, diabetes mellitus, disease mutation,
           glycolysis, nucleotide-binding, polymorphism; HET: GLC
           MRK; 1.50A {Homo sapiens} PDB: 1v4s_A* 3a0i_X* 3fr0_A*
           3goi_A* 3imx_A* 3h1v_X* 1v4t_A* (A:1-71,A:210-447)
          Length = 309

 Score = 25.3 bits (55), Expect = 9.4
 Identities = 7/20 (35%), Positives = 12/20 (60%)

Query: 187 LCKDDYQKASIPMLPNVVTD 206
           L  + +++AS+ MLP  V  
Sbjct: 50  LRLETHEEASVKMLPTYVRS 69


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.332    0.143    0.453 

Gapped
Lambda     K      H
   0.267   0.0361    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 2,371,558
Number of extensions: 102252
Number of successful extensions: 275
Number of sequences better than 10.0: 1
Number of HSP's gapped: 273
Number of HSP's successfully gapped: 30
Length of query: 305
Length of database: 4,956,049
Length adjustment: 88
Effective length of query: 217
Effective length of database: 1,981,209
Effective search space: 429922353
Effective search space used: 429922353
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 54 (25.6 bits)