RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|254780360|ref|YP_003064773.1| protoheme IX farnesyltransferase [Candidatus Liberibacter asiaticus str. psy62] (305 letters) >2w3y_A Virulence factor, EVF; drosophila pathogen, erwinia carotovora, S-palmitoylated protein, lipid-binding protein; HET: PLM; 2.00A {Pectobacterium carotovorum subsp} (A:) Length = 283 Score = 29.1 bits (65), Expect = 0.75 Identities = 21/87 (24%), Positives = 32/87 (36%), Gaps = 10/87 (11%) Query: 34 APGHISVLKSVISIFAIAMGAGASGALNMYYDADIDK----MMARTASRPIPLGQISPWE 89 AP H+ I A AS A+N ++ +K + +++ IP P + Sbjct: 52 APKHLQKQVKAGRILMERFVAVASAAVNKKAPSNKEKYHYDIWKEVSNQLIPAFFTDPIK 111 Query: 90 AW------VLGVSLAVSSIVIMGLAIN 110 V GV +A S I G I Sbjct: 112 GEQNLNTTVKGVEVAKSVIQFAGNVIA 138 >3dtt_A NADP oxidoreductase; YP_830112.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP} (A:1-218) Length = 218 Score = 28.0 bits (61), Expect = 1.8 Identities = 1/15 (6%), Positives = 7/15 (46%) Query: 58 GALNMYYDADIDKMM 72 G+ +++ + + Sbjct: 2 GSDKIHHHHHHENLY 16 >1yyq_A Trichodiene synthase; terpenoid cyclase fold, site-directed mutant, pyrophosphate, lyase; 2.10A {Fusarium sporotrichioides} PDB: 1yj4_A 1yyr_A* 1yys_A* 1jfa_A 1jfg_A 2q9y_A* 2q9z_A 2ael_A* 2aek_A* 2aet_A 2ps7_A 2ps8_A 1kiy_A 1kiz_A 1yyt_A* 1yyu_A* 2ps5_A 2ps4_A 2ps6_A (A:1-24,A:140-279) Length = 164 Score = 26.7 bits (59), Expect = 3.7 Identities = 10/44 (22%), Positives = 17/44 (38%) Query: 119 MSIFCYVVIYTIWLKRFTPQNIVIGGIAGAIPPMIGWASVTGDV 162 M+ + V ++W K + + I AI M W D+ Sbjct: 69 MNGLGHCVGASLWPKEQFNERSLFLEITSAIAQMENWMVWVNDL 112 >1wd3_A Alpha-L-arabinofuranosidase B; beta-sandwich, beta-trefoil, hydrolase; HET: NAG; 1.75A {Aspergillus kawachii} (A:1-319) Length = 319 Score = 26.6 bits (59), Expect = 4.5 Identities = 9/26 (34%), Positives = 13/26 (50%) Query: 40 VLKSVISIFAIAMGAGASGALNMYYD 65 +K +AI ASG+L+ YY Sbjct: 230 AVKGGADKWAIRGANAASGSLSTYYS 255 >1cza_N Hexokinase type I; structurally homologous domains; HET: GLC G6P ADP; 1.90A {Homo sapiens} (N:478-519,N:658-895) Length = 280 Score = 26.0 bits (57), Expect = 6.2 Identities = 8/23 (34%), Positives = 11/23 (47%) Query: 187 LCKDDYQKASIPMLPNVVTDRTT 209 L K + A + MLP+ V T Sbjct: 22 LRKQTHNNAVVKMLPSFVRRTTV 44 >3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, ATP-binding, cytoplasm, hydrolase, membrane; 2.80A {Schizosaccharomyces pombe} (A:1-326) Length = 326 Score = 25.9 bits (56), Expect = 6.7 Identities = 8/51 (15%), Positives = 13/51 (25%), Gaps = 11/51 (21%) Query: 263 DIRVTKKLFLESITYLFVLFTILMVDHL--------IDMKTVER---YFFS 302 D+ ++L I + M+D I FS Sbjct: 248 DLMKRRQLDARDIKVFVLDEADNMLDQQGLGDQSMRIKHLLPRNTQIVLFS 298 >3f9m_A Glucokinase; hexokinase IV, alternative splicing, ATP- binding, diabetes mellitus, disease mutation, glycolysis, nucleotide-binding, polymorphism; HET: GLC MRK; 1.50A {Homo sapiens} PDB: 1v4s_A* 3a0i_X* 3fr0_A* 3goi_A* 3imx_A* 3h1v_X* 1v4t_A* (A:1-71,A:210-447) Length = 309 Score = 25.3 bits (55), Expect = 9.4 Identities = 7/20 (35%), Positives = 12/20 (60%) Query: 187 LCKDDYQKASIPMLPNVVTD 206 L + +++AS+ MLP V Sbjct: 50 LRLETHEEASVKMLPTYVRS 69 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.332 0.143 0.453 Gapped Lambda K H 0.267 0.0361 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 2,371,558 Number of extensions: 102252 Number of successful extensions: 275 Number of sequences better than 10.0: 1 Number of HSP's gapped: 273 Number of HSP's successfully gapped: 30 Length of query: 305 Length of database: 4,956,049 Length adjustment: 88 Effective length of query: 217 Effective length of database: 1,981,209 Effective search space: 429922353 Effective search space used: 429922353 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (22.0 bits) S2: 54 (25.6 bits)