Query gi|254780361|ref|YP_003064774.1| ribosomal protein L32 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 61
No_of_seqs 118 out of 665
Neff 4.8
Searched_HMMs 33803
Date Wed Jun 1 12:23:12 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780361.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >2zjr_Z 50S ribosomal protein 99.9 5.7E-29 1.7E-33 172.1 2.4 57 1-57 4-60 (60)
2 >2j01_5 50S ribosomal protein 99.9 5E-29 1.5E-33 172.4 1.6 57 1-57 4-60 (60)
3 >3i1n_0 50S ribosomal protein 98.5 2.7E-08 8E-13 63.8 1.8 34 23-57 2-35 (35)
4 >3bbo_2 Ribosomal protein L32; 97.5 2.2E-05 6.5E-10 48.6 0.9 25 1-25 1-25 (57)
5 >2f9i_B Acetyl-coenzyme A carb 94.2 0.024 7E-07 32.7 2.1 32 18-49 19-58 (61)
6 >2gnr_A Conserved hypothetical 84.5 0.65 1.9E-05 25.2 2.4 24 25-48 45-69 (145)
7 >3cng_A Nudix hydrolase; struc 77.3 1.2 3.5E-05 23.8 1.7 21 28-48 4-33 (37)
8 >2qkd_A Zinc finger protein ZP 74.4 3.2 9.4E-05 21.6 3.3 29 27-56 12-56 (61)
9 >2apo_B Ribosome biogenesis pr 71.2 2.1 6.3E-05 22.5 1.7 22 26-48 5-26 (60)
10 >3a43_A HYPD, hydrogenase nick 70.2 3.4 0.0001 21.4 2.6 28 24-51 67-118 (139)
11 >2kdx_A HYPA, hydrogenase/urea 69.8 4.1 0.00012 21.0 3.0 29 24-52 70-102 (119)
12 >1vq8_1 50S ribosomal protein 68.8 3.4 1E-04 21.4 2.4 29 21-49 11-41 (57)
13 >2akl_A PHNA-like protein PA01 68.7 2.1 6.1E-05 22.5 1.3 26 23-48 23-52 (62)
14 >3gn5_A HTH-type transcription 63.7 3.8 0.00011 21.2 1.8 30 28-57 3-32 (71)
15 >1nnq_A Rubrerythrin; structur 62.1 4.3 0.00013 20.9 1.8 27 25-51 71-99 (105)
16 >3jyw_Y 60S ribosomal protein 60.9 4.7 0.00014 20.7 1.9 27 23-49 11-39 (52)
17 >3k1f_M Transcription initiati 60.4 3.4 0.0001 21.4 1.1 28 24-51 18-53 (57)
18 >2zkr_2 60S ribosomal protein 59.1 4.8 0.00014 20.6 1.6 26 23-48 12-39 (97)
19 >2aus_D NOP10, ribosome biogen 58.9 4.9 0.00014 20.6 1.7 21 27-48 5-25 (60)
20 >2ct7_A Ring finger protein 31 58.8 7.4 0.00022 19.7 2.6 27 23-49 21-52 (86)
21 >2k4x_A 30S ribosomal protein 54.7 6.1 0.00018 20.1 1.6 21 28-48 19-44 (55)
22 >1pft_A TFIIB, PFTFIIBN; N-ter 52.9 8.9 0.00026 19.2 2.2 31 27-57 5-41 (50)
23 >3h99_A Methionyl-tRNA synthet 51.8 5.5 0.00016 20.3 1.0 32 28-59 5-37 (41)
24 >1lko_A Rubrerythrin all-iron( 51.8 12 0.00035 18.6 2.7 28 26-53 6-36 (43)
25 >1s1i_Y L35, YP55, 60S ribosom 50.7 7.7 0.00023 19.6 1.6 27 23-49 11-39 (87)
26 >1dl6_A Transcription factor I 50.1 4.4 0.00013 20.8 0.3 35 23-57 7-47 (58)
27 >3ga8_A HTH-type transcription 49.8 9 0.00027 19.2 1.8 29 28-56 3-31 (78)
28 >1nui_A DNA primase/helicase; 47.9 7.7 0.00023 19.6 1.2 22 28-49 15-42 (65)
29 >2rgx_A Adenylate kinase; tran 46.6 8.7 0.00026 19.3 1.3 21 27-47 12-32 (58)
30 >2qkd_A Zinc finger protein ZP 45.9 19 0.00057 17.4 3.0 29 27-56 14-58 (62)
31 >2k2d_A Ring finger and CHY zi 43.2 11 0.00031 18.8 1.3 31 26-56 36-71 (79)
32 >3ir9_A Peptide chain release 38.5 21 0.00063 17.2 2.3 23 27-49 7-41 (50)
33 >1pqv_S STP-alpha, transcripti 38.2 22 0.00065 17.2 2.3 29 20-48 4-47 (52)
34 >1weo_A Cellulose synthase, ca 37.6 12 0.00034 18.6 0.8 30 19-48 8-43 (93)
35 >1twf_I B12.6, DNA-directed RN 37.4 24 0.00072 16.9 2.4 26 23-48 15-55 (69)
36 >1rqg_A Methionyl-tRNA synthet 37.3 7 0.00021 19.8 -0.4 30 29-58 6-36 (40)
37 >1qyp_A RNA polymerase II; tra 36.9 21 0.00063 17.2 2.1 26 23-48 11-51 (57)
38 >1odh_A MGCM1; transcription f 36.1 20 0.0006 17.3 1.9 21 29-50 112-133 (174)
39 >1j8f_A SIRT2, sirtuin 2, isof 35.7 15 0.00043 18.1 1.1 21 22-42 48-68 (72)
40 >4gat_A Nitrogen regulatory pr 33.2 6.6 0.00019 19.9 -1.0 25 25-49 7-39 (66)
41 >3f2b_A DNA-directed DNA polym 33.1 17 0.0005 17.8 1.0 13 36-48 27-39 (54)
42 >3h0g_I DNA-directed RNA polym 31.3 29 0.00085 16.6 2.0 23 26-48 18-55 (60)
43 >1q14_A HST2 protein; histone 29.7 29 0.00084 16.6 1.8 22 21-42 27-48 (52)
44 >1lv3_A Hypothetical protein Y 29.5 37 0.0011 16.0 2.3 18 22-39 4-21 (68)
45 >1ryq_A DNA-directed RNA polym 29.5 25 0.00072 16.9 1.4 34 21-55 5-44 (69)
46 >1u5k_A Hypothetical protein; 29.1 25 0.00074 16.9 1.4 25 23-47 64-95 (162)
47 >1h7b_A Anaerobic ribonucleoti 27.6 29 0.00085 16.6 1.5 24 27-50 508-533 (555)
48 >3glr_A NAD-dependent deacetyl 26.6 25 0.00075 16.8 1.1 24 20-43 23-46 (55)
49 >2waq_B DNA-directed RNA polym 26.1 53 0.0016 15.2 2.7 27 26-52 5-36 (76)
50 >2vut_I AREA, nitrogen regulat 25.4 9.7 0.00029 19.0 -1.3 21 29-49 3-31 (43)
51 >2kn9_A Rubredoxin; metallopro 25.4 39 0.0012 15.9 1.8 32 21-52 21-72 (81)
52 >2waq_P DNA-directed RNA polym 24.2 26 0.00078 16.7 0.8 21 28-48 4-31 (48)
53 >2b4y_A NAD-dependent deacetyl 24.1 37 0.0011 16.0 1.5 18 25-42 47-64 (68)
54 >1p91_A Ribosomal RNA large su 23.6 43 0.0013 15.7 1.8 21 29-49 4-27 (269)
55 >3dfx_A Trans-acting T-cell-sp 21.8 10 0.0003 19.0 -1.8 23 27-49 7-37 (63)
56 >1yc5_A NAD-dependent deacetyl 21.1 46 0.0014 15.5 1.5 22 21-42 22-43 (46)
57 >2exu_A Transcription initiati 21.0 22 0.00064 17.2 -0.2 24 26-49 3-30 (91)
No 1
>>2zjr_Z 50S ribosomal protein L32; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} (Z:)
Probab=99.95 E-value=5.7e-29 Score=172.13 Aligned_cols=57 Identities=46% Similarity=0.635 Sum_probs=56.1
Q ss_pred CCCCCCCCCHHCCCCHHHHHCCCCCCEEECCCCCCEEEEEEEECCCCCCCCEEEEEE
Q ss_conf 978878876100174122310268837887899782440464257786768796434
Q gi|254780361|r 1 MAVPKRKTSPSKRGMRRSADALTPPAYVEDKKSGELRRPHHVDMKTGLYRGRQVFVL 57 (61)
Q Consensus 1 MAVPKrK~S~sr~~~RRsh~~l~~p~l~~c~~cG~~~~~H~vc~~cG~YkGr~Vi~~ 57 (61)
|||||+|+|+||+++|||||+|++|+|+.||+||++++||+||++||||+|||||++
T Consensus 4 MAVPKrk~Sksr~~~RRsh~kl~~p~l~~C~~cG~~~~pH~vC~~CG~Ykgr~v~~~ 60 (60)
T 2zjr_Z 4 HPVPKKKTSKSKRDMRRSHHALTAPNLTECPQCHGKKLSHHICPNCGYYDGRQVLAV 60 (60)
T ss_dssp CSCCSSCCCTTHHHHHTTTCCCCCCCCEECTTTCCEECTTBCCTTTCBSSSBCSCC-
T ss_pred CCCCCCCCCCCCCHHHHCCHHHCCCCEEECCCCCCCCCCEEECCCCCCCCCEEEEEC
T ss_conf 787878667200221210033038861588999997466067698881999986769
No 2
>>2j01_5 50S ribosomal protein L32; ribosome, tRNA, paromomycin, mRNA, translation; 2.8A {Thermus thermophilus} (5:)
Probab=99.95 E-value=5e-29 Score=172.42 Aligned_cols=57 Identities=42% Similarity=0.670 Sum_probs=56.1
Q ss_pred CCCCCCCCCHHCCCCHHHHHCCCCCCEEECCCCCCEEEEEEEECCCCCCCCEEEEEE
Q ss_conf 978878876100174122310268837887899782440464257786768796434
Q gi|254780361|r 1 MAVPKRKTSPSKRGMRRSADALTPPAYVEDKKSGELRRPHHVDMKTGLYRGRQVFVL 57 (61)
Q Consensus 1 MAVPKrK~S~sr~~~RRsh~~l~~p~l~~c~~cG~~~~~H~vc~~cG~YkGr~Vi~~ 57 (61)
|||||+|+|+||+++|||||+|++|+|+.||+||++++||+||++||||+|||||++
T Consensus 4 MAvPKrK~Sksr~~~RRsh~k~~~p~l~~C~~cG~~~~pH~vC~~CG~Ykgr~Vi~v 60 (60)
T 2j01_5 4 HPVPKKKTSKARRDARRSHHALTPPTLVPCPECKAMKPPHTVCPECGYYAGRKVLEV 60 (60)
T ss_dssp SSCCSSCCCHHHHHHHHGGGCCCCCCCBCCSSSSSCBCTTCBCTTTCCSSSCCSCCC
T ss_pred CCCCCCCCCCCCCHHHCCCCCCCCCCEEECCCCCCCCCCEEECCCCCCCCCEEEEEC
T ss_conf 788878677200222202402358834689999982066068798981999985769
No 3
>>3i1n_0 50S ribosomal protein L32; ribosome structure, protein-RNA complex, acetylation, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA- binding, methylation; 3.19A {Escherichia coli k-12} PDB: 1vs8_0 3e1b_T 3e1d_T 1vs6_0 3i1p_0 3i1r_0 3i1t_0 3i20_0 3i22_0 2qam_0* 1p85_Z 1p86_Z 2awb_0 2aw4_0 2i2v_0 2j28_0 2i2t_0* 2qao_0* 2qba_0* 2qbc_0* ... (0:23-57)
Probab=98.53 E-value=2.7e-08 Score=63.84 Aligned_cols=34 Identities=38% Similarity=0.609 Sum_probs=31.0
Q ss_pred CCCCEEECCCCCCEEEEEEEECCCCCCCCEEEEEE
Q ss_conf 68837887899782440464257786768796434
Q gi|254780361|r 23 TPPAYVEDKKSGELRRPHHVDMKTGLYRGRQVFVL 57 (61)
Q Consensus 23 ~~p~l~~c~~cG~~~~~H~vc~~cG~YkGr~Vi~~ 57 (61)
+.|+|++++.+||.+++|+|.++ |||+||+||++
T Consensus 2 t~~~lsvd~ttGE~H~RHHit~d-GfYRGrKVi~k 35 (35)
T 3i1n_0 2 AVTSLSVDKTSGEKHLRHHITAD-GYYRGRKVIAK 35 (35)
T ss_dssp CCCCEEECSSSSCEEETTSCCTT-SBSSSSBCSCC
T ss_pred CCCCEEECCCCCCCCCCCEECCC-CCCCCEEEEEC
T ss_conf 69746578899997057178899-77989983519
No 4
>>3bbo_2 Ribosomal protein L32; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} (2:)
Probab=97.53 E-value=2.2e-05 Score=48.59 Aligned_cols=25 Identities=36% Similarity=0.389 Sum_probs=22.4
Q ss_pred CCCCCCCCCHHCCCCHHHHHCCCCC
Q ss_conf 9788788761001741223102688
Q gi|254780361|r 1 MAVPKRKTSPSKRGMRRSADALTPP 25 (61)
Q Consensus 1 MAVPKrK~S~sr~~~RRsh~~l~~p 25 (61)
|||||.|+|+|+++.|++.|+..+-
T Consensus 1 MAVPKKRTS~sKk~iRk~~WK~ka~ 25 (57)
T 3bbo_2 1 MAVPKKRTSIYKKRIRKNIWKKKGY 25 (57)
T ss_dssp CCCCSSCCCTTHHHHTTSTTCCCTT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 9988543407899999999999989
No 5
>>2f9i_B Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta; zinc ribbon, crotonase superfamily, spiral domain; 1.98A {Staphylococcus aureus} (B:1-61)
Probab=94.24 E-value=0.024 Score=32.73 Aligned_cols=32 Identities=13% Similarity=0.038 Sum_probs=23.5
Q ss_pred HHHCCCCCC--EEECCCCCCEEE------EEEEECCCCCC
Q ss_conf 231026883--788789978244------04642577867
Q gi|254780361|r 18 SADALTPPA--YVEDKKSGELRR------PHHVDMKTGLY 49 (61)
Q Consensus 18 sh~~l~~p~--l~~c~~cG~~~~------~H~vc~~cG~Y 49 (61)
+....+.|. .+.||+||+... -..|||.||||
T Consensus 19 ~~~k~~vp~gLW~KCp~C~~~~~~k~l~~n~~VCp~Cg~H 58 (61)
T 2f9i_B 19 DSKNNDVPAGIMTKCPKCKKIMYTKELAENLNVCFNCDHH 58 (61)
T ss_dssp -------CCSSEEECTTTCCEEEHHHHHHTTTBCTTTCCB
T ss_pred CCCCCCCCCCCEEECCCCCCEEEHHHHHHHCCCCCCCCCC
T ss_conf 5335789998653588987402499999848878499897
No 6
>>2gnr_A Conserved hypothetical protein; 13815350, structural genomics, PSI, protein structure initiative; 1.80A {Sulfolobus solfataricus P2} (A:)
Probab=84.54 E-value=0.65 Score=25.19 Aligned_cols=24 Identities=13% Similarity=-0.053 Sum_probs=19.8
Q ss_pred CCEEECCCCCCEEEE-EEEECCCCC
Q ss_conf 837887899782440-464257786
Q gi|254780361|r 25 PAYVEDKKSGELRRP-HHVDMKTGL 48 (61)
Q Consensus 25 p~l~~c~~cG~~~~~-H~vc~~cG~ 48 (61)
--+..|++||....| ..+|+.||-
T Consensus 45 l~~~rC~~CG~~~~Ppr~~C~~Cg~ 69 (145)
T 2gnr_A 45 IIGSKCSKCGRIFVPARSYCEHCFV 69 (145)
T ss_dssp CEEEECTTTCCEEESCCSEETTTTE
T ss_pred EEEEEECCCCCEEECCCCCCCCCCC
T ss_conf 9999918999788675356899999
No 7
>>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protein structure initiative, midwest center for structural genomics; 2.00A {Nitrosomonas europaea atcc 19718} (A:1-37)
Probab=77.28 E-value=1.2 Score=23.81 Aligned_cols=21 Identities=14% Similarity=-0.074 Sum_probs=16.5
Q ss_pred EECCCCCCEE---------EEEEEECCCCC
Q ss_conf 8878997824---------40464257786
Q gi|254780361|r 28 VEDKKSGELR---------RPHHVDMKTGL 48 (61)
Q Consensus 28 ~~c~~cG~~~---------~~H~vc~~cG~ 48 (61)
-.|++||.+. ++-.||++||+
T Consensus 4 kfC~~CG~~v~~~IP~GD~r~R~VC~~Cg~ 33 (37)
T 3cng_A 4 KFCSQCGGEVILRIPEGDTLPRYICPKCHT 33 (37)
T ss_dssp CBCTTTCCBCEEECCTTCSSCEEEETTTTE
T ss_pred EECCCCCCCCCCCCCCCCCEEEEECCCCCC
T ss_conf 288233785613557888603765699997
No 8
>>2qkd_A Zinc finger protein ZPR1; helical hairpins, beta helix, anti-parrallel beta sheet, double straded anti-parallel beta helix, metal binding protein; 2.00A {Mus musculus} (A:1-61)
Probab=74.38 E-value=3.2 Score=21.58 Aligned_cols=29 Identities=3% Similarity=-0.167 Sum_probs=19.8
Q ss_pred EEECCCCCCE----------------EEEEEEECCCCCCCCEEEEE
Q ss_conf 7887899782----------------44046425778676879643
Q gi|254780361|r 27 YVEDKKSGEL----------------RRPHHVDMKTGLYRGRQVFV 56 (61)
Q Consensus 27 l~~c~~cG~~----------------~~~H~vc~~cG~YkGr~Vi~ 56 (61)
-+.|++||+. .+....|++|| |+..+|-.
T Consensus 12 ~s~C~~C~~~g~t~m~~t~IP~Fkeviimsf~C~~Cg-yknnEVk~ 56 (61)
T 2qkd_A 12 ESLCMNCYRNGTTRLLLTKIPFFREIIVSSFSCEHCG-WNNTEIQS 56 (61)
T ss_dssp EEECTTTSSEEEEEEEEEEETTTEEEEEEEEECTTTC-CEEEEEEE
T ss_pred EEECCCCCCCCEEEEEEECCCCCCCEEEEEEECCCCC-CCCCEEEE
T ss_conf 4207467878779999853887553899998899889-93421626
No 9
>>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} (B:)
Probab=71.15 E-value=2.1 Score=22.48 Aligned_cols=22 Identities=18% Similarity=0.057 Sum_probs=17.1
Q ss_pred CEEECCCCCCEEEEEEEECCCCC
Q ss_conf 37887899782440464257786
Q gi|254780361|r 26 AYVEDKKSGELRRPHHVDMKTGL 48 (61)
Q Consensus 26 ~l~~c~~cG~~~~~H~vc~~cG~ 48 (61)
-|-.|++|+.++|.. +||.||-
T Consensus 5 ~irkC~~c~~YTLk~-~cP~cG~ 26 (60)
T 2apo_B 5 RXKKCPKCGLYTLKE-ICPKCGE 26 (60)
T ss_dssp CCEECTTTCCEESSS-BCSSSCS
T ss_pred HHHHCCCCCCEECCC-CCCCCCC
T ss_conf 665187455432566-3777888
No 10
>>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A* (A:)
Probab=70.23 E-value=3.4 Score=21.43 Aligned_cols=28 Identities=11% Similarity=-0.135 Sum_probs=20.3
Q ss_pred CCCEEECCCCCCEEEEE------------------------EEECCCCCCCC
Q ss_conf 88378878997824404------------------------64257786768
Q gi|254780361|r 24 PPAYVEDKKSGELRRPH------------------------HVDMKTGLYRG 51 (61)
Q Consensus 24 ~p~l~~c~~cG~~~~~H------------------------~vc~~cG~YkG 51 (61)
.|....|++||.---.- -.||.||-+.-
T Consensus 67 ~p~~~~C~~Cg~~~~~~~~~~~~~~~~~~~~h~~p~~~~~~~~CP~Cgs~~~ 118 (139)
T 3a43_A 67 EEAVFKCRNCNYEWKLKEVKDKFDERIKEDIHFIPEVVHAFLACPKCGSHDF 118 (139)
T ss_dssp ECCEEEETTTCCEEEGGGCTTCCSCCCGGGCCCCGGGCGGGCSCSSSSCCCE
T ss_pred CCCEEECCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 0872798668984001410011121222222334323455545929779876
No 11
>>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori} (A:)
Probab=69.80 E-value=4.1 Score=20.98 Aligned_cols=29 Identities=14% Similarity=-0.101 Sum_probs=21.0
Q ss_pred CCCEEECCCCCCEEE---EE-EEECCCCCCCCE
Q ss_conf 883788789978244---04-642577867687
Q gi|254780361|r 24 PPAYVEDKKSGELRR---PH-HVDMKTGLYRGR 52 (61)
Q Consensus 24 ~p~l~~c~~cG~~~~---~H-~vc~~cG~YkGr 52 (61)
.|....|.+||...- .+ ..||.||-+.-+
T Consensus 70 ~p~~~~C~~Cg~~~~~~~~~~~~CP~Cgs~~~~ 102 (119)
T 2kdx_A 70 EKVELECKDCSHVFKPNALDYGVCEKCHSKNVI 102 (119)
T ss_dssp ECCEEECSSSSCEECSCCSTTCCCSSSSSCCCE
T ss_pred CCCEEECCCCCCEECCCCCCCCCCCCCCCCCCE
T ss_conf 386689778998853477517749097898879
No 12
>>1vq8_1 50S ribosomal protein L37E; ribosome 50S, protein-protein complex, RNA-RNA complex, protein-RNA complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} (1:)
Probab=68.85 E-value=3.4 Score=21.43 Aligned_cols=29 Identities=14% Similarity=0.166 Sum_probs=23.4
Q ss_pred CCCCCCEEECCCCCC--EEEEEEEECCCCCC
Q ss_conf 026883788789978--24404642577867
Q gi|254780361|r 21 ALTPPAYVEDKKSGE--LRRPHHVDMKTGLY 49 (61)
Q Consensus 21 ~l~~p~l~~c~~cG~--~~~~H~vc~~cG~Y 49 (61)
+-...+-+.|.-||. +++....|.+|||=
T Consensus 11 Kr~~KtH~lCrRCG~~syH~qK~~CasCGyg 41 (57)
T 1vq8_1 11 KKNTTTHTKCRRCGEKSYHTKKKVCSSCGFG 41 (57)
T ss_dssp TCCCCCEEECTTTCSEEEETTTTEETTTCTT
T ss_pred CCCCCCCCHHHCCCCHHHHHCCCCCCCCCCC
T ss_conf 5578751543165824443314401446888
No 13
>>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} (A:1-62)
Probab=68.75 E-value=2.1 Score=22.54 Aligned_cols=26 Identities=4% Similarity=-0.208 Sum_probs=18.9
Q ss_pred CCCCEEECCCCCCEEE----EEEEECCCCC
Q ss_conf 6883788789978244----0464257786
Q gi|254780361|r 23 TPPAYVEDKKSGELRR----PHHVDMKTGL 48 (61)
Q Consensus 23 ~~p~l~~c~~cG~~~~----~H~vc~~cG~ 48 (61)
..-+|-.||+|+.--- .-.|||.||+
T Consensus 23 mm~~lP~CPkC~SeYTYeDg~l~VCPECgh 52 (62)
T 2akl_A 23 MVSTLPPCPQCNSEYTYEDGALLVCPECAH 52 (62)
T ss_dssp CCCCSCCCTTTCCCCCEECSSSEEETTTTE
T ss_pred CCCCCCCCCCCCCCCEECCCCEEECCCCCC
T ss_conf 567798898889913283799889987637
No 14
>>3gn5_A HTH-type transcriptional regulator MQSA (YGIT/B3021); Zn-binding protein, HTH-XRE DNA binding motif, DNA-binding, transcription regulation; HET: MEQ; 2.15A {Escherichia coli k-12} PDB: 3gn5_B* (A:1-71)
Probab=63.70 E-value=3.8 Score=21.15 Aligned_cols=30 Identities=10% Similarity=0.050 Sum_probs=23.4
Q ss_pred EECCCCCCEEEEEEEECCCCCCCCEEEEEE
Q ss_conf 887899782440464257786768796434
Q gi|254780361|r 28 VEDKKSGELRRPHHVDMKTGLYRGRQVFVL 57 (61)
Q Consensus 28 ~~c~~cG~~~~~H~vc~~cG~YkGr~Vi~~ 57 (61)
.+||.||+-.|.|.+=+.-=.|+|...+..
T Consensus 3 MkCPiCg~g~L~~~~~~~~~tYkG~s~~I~ 32 (71)
T 3gn5_A 3 MKCPVCHQGEMVSGIKDIPYTFRGRKTVLK 32 (71)
T ss_dssp CBCTTTSSSBEEEEEEEEEEEETTEEEEEE
T ss_pred CCCCCCCCCCEECCCCCEEEEECCEEEEEE
T ss_conf 889789990302022422688788899990
No 15
>>1nnq_A Rubrerythrin; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics, secsg; 2.35A {Pyrococcus furiosus} (A:67-171)
Probab=62.09 E-value=4.3 Score=20.89 Aligned_cols=27 Identities=7% Similarity=-0.198 Sum_probs=20.9
Q ss_pred CCEEECCCCCCEEEEE--EEECCCCCCCC
Q ss_conf 8378878997824404--64257786768
Q gi|254780361|r 25 PAYVEDKKSGELRRPH--HVDMKTGLYRG 51 (61)
Q Consensus 25 p~l~~c~~cG~~~~~H--~vc~~cG~YkG 51 (61)
...-+|++||....-- -+||.||.=++
T Consensus 71 ~~~~~C~vCGyi~~ge~P~~CPvC~~~~~ 99 (105)
T 1nnq_A 71 KKVYICPICGYTAVDEAPEYCPVCGAPKE 99 (105)
T ss_dssp SCEEECTTTCCEEESCCCSBCTTTCCBGG
T ss_pred CCEEECCCCCCCCCCCCCCCCCCCCCCHH
T ss_conf 78348998939289999997989989666
No 16
>>3jyw_Y 60S ribosomal protein L37(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} (Y:)
Probab=60.89 E-value=4.7 Score=20.69 Aligned_cols=27 Identities=7% Similarity=0.025 Sum_probs=22.4
Q ss_pred CCCCEEECCCCCC--EEEEEEEECCCCCC
Q ss_conf 6883788789978--24404642577867
Q gi|254780361|r 23 TPPAYVEDKKSGE--LRRPHHVDMKTGLY 49 (61)
Q Consensus 23 ~~p~l~~c~~cG~--~~~~H~vc~~cG~Y 49 (61)
...+-+.|..||. +++....|.+|||=
T Consensus 11 ~~ktH~~CrrCGr~syH~qK~~Ca~CGyp 39 (52)
T 3jyw_Y 11 HNKSHTLCNRCGRRSFHVQKKTCSSCGYP 39 (52)
T ss_dssp CSCCEECCSSSCCCCEETTTCCCSSSCSS
T ss_pred CCCCCCHHHCCCCHHHEECCCCCCCCCCC
T ss_conf 68541632064841101044502337897
No 17
>>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, transcription factor, DNA-binding, DNA-directed RNA polymerase; 4.30A {Saccharomyces cerevisiae} (M:1-57)
Probab=60.38 E-value=3.4 Score=21.38 Aligned_cols=28 Identities=11% Similarity=-0.083 Sum_probs=18.1
Q ss_pred CCCEEECCCCCCE--EE------EEEEECCCCCCCC
Q ss_conf 8837887899782--44------0464257786768
Q gi|254780361|r 24 PPAYVEDKKSGEL--RR------PHHVDMKTGLYRG 51 (61)
Q Consensus 24 ~p~l~~c~~cG~~--~~------~H~vc~~cG~YkG 51 (61)
.-....||.||.. .+ --.||..||+-=+
T Consensus 18 ~~~~~~CPeC~s~~~~lv~D~~~Ge~VC~~CGlVi~ 53 (57)
T 3k1f_M 18 LNIVLTCPECKVYPPKIVERFSEGDVVCALCGLVLS 53 (57)
T ss_dssp CCCCCCCTTTCCSSCCEEEEGGGTEEEETTTCBBCC
T ss_pred CEEEEECCCCCCCCCEEEEECCCCCEECCCCCEEEC
T ss_conf 864468989999898898879889679735891944
No 18
>>2zkr_2 60S ribosomal protein L37E; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} (2:)
Probab=59.06 E-value=4.8 Score=20.63 Aligned_cols=26 Identities=12% Similarity=0.056 Sum_probs=21.7
Q ss_pred CCCCEEECCCCCC--EEEEEEEECCCCC
Q ss_conf 6883788789978--2440464257786
Q gi|254780361|r 23 TPPAYVEDKKSGE--LRRPHHVDMKTGL 48 (61)
Q Consensus 23 ~~p~l~~c~~cG~--~~~~H~vc~~cG~ 48 (61)
...+-+.|..||. +++....|.+|||
T Consensus 12 ~~KtHtlCrRCGr~syH~qK~~CasCGy 39 (97)
T 2zkr_2 12 RNKTHTLCRRCGSKAYHLQKSTCGKCGY 39 (97)
T ss_dssp CCCCEECCTTTCSSCEETTSCCBTTTCT
T ss_pred CCCCCCHHCCCCCHHHHHHCCCCCCCCC
T ss_conf 5777572106686234330222454688
No 19
>>2aus_D NOP10, ribosome biogenesis protein NOP10; isomerase, structural protein, isomerase/structural protein complex; 2.10A {Pyrococcus abyssi} PDB: 3hax_C* 2hvy_C* 3hay_C* 2ey4_E 3hjw_B* 2rfk_B* 3hjy_B (D:)
Probab=58.87 E-value=4.9 Score=20.59 Aligned_cols=21 Identities=14% Similarity=-0.023 Sum_probs=15.1
Q ss_pred EEECCCCCCEEEEEEEECCCCC
Q ss_conf 7887899782440464257786
Q gi|254780361|r 27 YVEDKKSGELRRPHHVDMKTGL 48 (61)
Q Consensus 27 l~~c~~cG~~~~~H~vc~~cG~ 48 (61)
+-.|++|+.+.+.. +||.||-
T Consensus 5 ir~c~~c~~YTLk~-~cP~cG~ 25 (60)
T 2aus_D 5 IRKCPKCGRYTLKE-TCPVCGE 25 (60)
T ss_dssp CEECTTTCCEESSS-BCTTTCS
T ss_pred HHHCCCCCCEECCC-CCCCCCC
T ss_conf 65186256542345-3767788
No 20
>>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:)
Probab=58.80 E-value=7.4 Score=19.66 Aligned_cols=27 Identities=4% Similarity=-0.229 Sum_probs=21.4
Q ss_pred CCCCEEECCCCCCEEE-----EEEEECCCCCC
Q ss_conf 6883788789978244-----04642577867
Q gi|254780361|r 23 TPPAYVEDKKSGELRR-----PHHVDMKTGLY 49 (61)
Q Consensus 23 ~~p~l~~c~~cG~~~~-----~H~vc~~cG~Y 49 (61)
..+++.-||+|+-... ++-+|+.||+.
T Consensus 21 ~~~~~~~CP~c~~~~~~~~~~~~~~C~~C~~~ 52 (86)
T 2ct7_A 21 RDPKFLWCAQCSFGFIYEREQLEATCPQCHQT 52 (86)
T ss_dssp SCCCEECCSSSCCCEECCCSCSCEECTTTCCE
T ss_pred HCCCCEECCCCCCEEEECCCCCEEECCCCCCE
T ss_conf 78896489999975897799997789998983
No 21
>>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} (A:)
Probab=54.68 E-value=6.1 Score=20.07 Aligned_cols=21 Identities=10% Similarity=-0.042 Sum_probs=14.8
Q ss_pred EECCCCCC--EE---EEEEEECCCCC
Q ss_conf 88789978--24---40464257786
Q gi|254780361|r 28 VEDKKSGE--LR---RPHHVDMKTGL 48 (61)
Q Consensus 28 ~~c~~cG~--~~---~~H~vc~~cG~ 48 (61)
-.||+||. +. .--+.|..||+
T Consensus 19 k~Cp~Cg~GvfmA~H~dR~~CGKCg~ 44 (55)
T 2k4x_A 19 RFCPRCGPGVFLAEHADRYSCGRCGY 44 (55)
T ss_dssp CCCTTTTTTCCCEECSSEEECTTTCC
T ss_pred CCCCCCCCCEEEEECCCCCCCCCCCC
T ss_conf 75969999477412599776447656
No 22
>>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} (A:)
Probab=52.93 E-value=8.9 Score=19.22 Aligned_cols=31 Identities=10% Similarity=-0.070 Sum_probs=21.2
Q ss_pred EEECCCCCCEEE------EEEEECCCCCCCCEEEEEE
Q ss_conf 788789978244------0464257786768796434
Q gi|254780361|r 27 YVEDKKSGELRR------PHHVDMKTGLYRGRQVFVL 57 (61)
Q Consensus 27 l~~c~~cG~~~~------~H~vc~~cG~YkGr~Vi~~ 57 (61)
-..||.||...+ --.||.+||+--.-.+|+-
T Consensus 5 ~~~Cp~Cg~~~iv~D~~~Ge~vC~~CG~Vlee~~iD~ 41 (50)
T 1pft_A 5 QKVCPACESAELIYDPERGEIVCAKCGYVIEENIIDM 41 (50)
T ss_dssp CCSCTTTSCCCEEEETTTTEEEESSSCCBCCCCCCCC
T ss_pred CCCCCCCCCCCEEEECCCCEEECCCCCCEECCCCCCC
T ss_conf 5559298798278878879185126985924342458
No 23
>>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, metal-binding, nucleotide-binding; HET: CIT; 1.40A {Escherichia coli k-12} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A (A:152-192)
Probab=51.83 E-value=5.5 Score=20.34 Aligned_cols=32 Identities=13% Similarity=-0.034 Sum_probs=23.4
Q ss_pred EECCCCCCEEEEEEEECCCC-CCCCEEEEEEEC
Q ss_conf 88789978244046425778-676879643423
Q gi|254780361|r 28 VEDKKSGELRRPHHVDMKTG-LYRGRQVFVLKT 59 (61)
Q Consensus 28 ~~c~~cG~~~~~H~vc~~cG-~YkGr~Vi~~~~ 59 (61)
-.||.||...-.---|-+|| .|.--+.|+++.
T Consensus 5 G~CP~C~~~~a~GDqCe~CG~~~~p~eLi~P~c 37 (41)
T 3h99_A 5 GTCPKCKSPDQYGDNCEVCGATYSPTELIEPKS 37 (41)
T ss_dssp EECTTTCCSSEETTBCTTTCCBCCGGGCEEEEE
T ss_pred EECCCCCCCCCCCCCCEECCCCCCHHHHCCCCC
T ss_conf 135777761006886632587698577307755
No 24
>>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubredoxin-like, electron transport; 1.63A {Desulfovibrio vulgaris} (A:149-191)
Probab=51.79 E-value=12 Score=18.56 Aligned_cols=28 Identities=4% Similarity=-0.057 Sum_probs=19.9
Q ss_pred CEEECCCCCCEEE---EEEEECCCCCCCCEE
Q ss_conf 3788789978244---046425778676879
Q gi|254780361|r 26 AYVEDKKSGELRR---PHHVDMKTGLYRGRQ 53 (61)
Q Consensus 26 ~l~~c~~cG~~~~---~H~vc~~cG~YkGr~ 53 (61)
..=.|.+||.... +=-+||.||.=++.-
T Consensus 6 ~~W~C~~CGyi~~G~~aP~~CPvC~~~~~~F 36 (43)
T 1lko_A 6 TKWRCRNCGYVHEGTGAPELCPACAHPKAHF 36 (43)
T ss_dssp EEEEETTTCCEEEEEECCSBCTTTCCBGGGE
T ss_pred CEEECCCCCCEEECCCCCCCCCCCCCCHHHH
T ss_conf 5478899986201899988598999966988
No 25
>>1s1i_Y L35, YP55, 60S ribosomal protein L37-A; 80S ribosome, 60S ribosomal subunit, EEF2, tRNA translocation, sordarin, cryo-EM; 11.70A {Saccharomyces cerevisiae} (Y:)
Probab=50.75 E-value=7.7 Score=19.56 Aligned_cols=27 Identities=7% Similarity=0.025 Sum_probs=22.0
Q ss_pred CCCCEEECCCCCC--EEEEEEEECCCCCC
Q ss_conf 6883788789978--24404642577867
Q gi|254780361|r 23 TPPAYVEDKKSGE--LRRPHHVDMKTGLY 49 (61)
Q Consensus 23 ~~p~l~~c~~cG~--~~~~H~vc~~cG~Y 49 (61)
...+-+.|.-||. +++..-.|.+|||=
T Consensus 11 ~~ktH~lCrrcG~~syH~qK~~CasCGyp 39 (87)
T 1s1i_Y 11 HNKSHTLCNRCGRRSFHVQKKTCSSCGYP 39 (87)
T ss_dssp CCCCSEECTTSSSSEECSSSSSCSSSCTT
T ss_pred CCCCCCHHHCCCCCCCEECCCCCCCCCCC
T ss_conf 57674842065840113053446536897
No 26
>>1dl6_A Transcription factor II B (TFIIB); zinc ribbon; NMR {Homo sapiens} (A:)
Probab=50.12 E-value=4.4 Score=20.80 Aligned_cols=35 Identities=14% Similarity=0.061 Sum_probs=22.5
Q ss_pred CCCCEEECCCCCCEEE------EEEEECCCCCCCCEEEEEE
Q ss_conf 6883788789978244------0464257786768796434
Q gi|254780361|r 23 TPPAYVEDKKSGELRR------PHHVDMKTGLYRGRQVFVL 57 (61)
Q Consensus 23 ~~p~l~~c~~cG~~~~------~H~vc~~cG~YkGr~Vi~~ 57 (61)
....-..||.||...+ --.||.+||+--.-.+|+.
T Consensus 7 ~~~~~~~Cp~Cg~~~iv~D~~~Ge~vC~~CG~Vlee~~iD~ 47 (58)
T 1dl6_A 7 DALPRVTCPNHPDAILVEDYRAGDMICPECGLVVGDRVIDV 47 (58)
T ss_dssp CCCSCCSBTTBSSSCCEECSSSCCEECTTTCCEECCSCCCC
T ss_pred CCCCCCCCCCCCCCCEEEECCCCEEECCCCCCEECCCCCCC
T ss_conf 35575599699798777887888185202998933313368
No 27
>>3ga8_A HTH-type transcriptional regulator MQSA (YGIT/B3021); helix-turn-helix, Zn-binding protein, DNA-binding, transcription regulation; HET: PE4; 1.70A {Escherichia coli k-12} PDB: 3hi2_A (A:)
Probab=49.85 E-value=9 Score=19.21 Aligned_cols=29 Identities=10% Similarity=0.076 Sum_probs=18.3
Q ss_pred EECCCCCCEEEEEEEECCCCCCCCEEEEE
Q ss_conf 88789978244046425778676879643
Q gi|254780361|r 28 VEDKKSGELRRPHHVDMKTGLYRGRQVFV 56 (61)
Q Consensus 28 ~~c~~cG~~~~~H~vc~~cG~YkGr~Vi~ 56 (61)
..||.||+-.+-+-+-..-=.|+|+.++.
T Consensus 3 MkCp~Cg~g~l~~~~~~~~~~y~G~~~~I 31 (78)
T 3ga8_A 3 MKCPVCHQGEMVSGIKDIPYTFRGRKTVL 31 (78)
T ss_dssp CBCTTTSSSBEEEEEEEEEEEETTEEEEE
T ss_pred CCCCCCCCCEEECCEEEEEEEECCEEEEE
T ss_conf 60885898143644055589989899997
No 28
>>1nui_A DNA primase/helicase; zinc-biding domain, toprim fold, DNA replication, DNA- directed RNA polymerase, primosome, late protein; HET: DNA; 2.90A {Enterobacteria phage T7} (A:1-65)
Probab=47.86 E-value=7.7 Score=19.56 Aligned_cols=22 Identities=9% Similarity=0.137 Sum_probs=15.3
Q ss_pred EECCCCCC------EEEEEEEECCCCCC
Q ss_conf 88789978------24404642577867
Q gi|254780361|r 28 VEDKKSGE------LRRPHHVDMKTGLY 49 (61)
Q Consensus 28 ~~c~~cG~------~~~~H~vc~~cG~Y 49 (61)
..||+||. +.--|.-|-.|++|
T Consensus 15 ~pCpnCGSSDa~s~YsDGh~~CF~C~~~ 42 (65)
T 1nui_A 15 IPCDNCGSSDGNSLFSDGHTFCYVCEKW 42 (65)
T ss_dssp ECCSSSCCSSCEEEETTSCEEETTTCCE
T ss_pred CCCCCCCCCCCCEEECCCCEEECCCCCC
T ss_conf 8999897999987953998897889985
No 29
>>2rgx_A Adenylate kinase; transferase(phosphotransferase), ATP-binding, cytoplasm, nucleotide-binding; HET: AP5; 1.90A {Aquifex aeolicus} PDB: 2rh5_A (A:113-170)
Probab=46.60 E-value=8.7 Score=19.27 Aligned_cols=21 Identities=14% Similarity=0.097 Sum_probs=17.2
Q ss_pred EEECCCCCCEEEEEEEECCCC
Q ss_conf 788789978244046425778
Q gi|254780361|r 27 YVEDKKSGELRRPHHVDMKTG 47 (61)
Q Consensus 27 l~~c~~cG~~~~~H~vc~~cG 47 (61)
--.||+||+.---...||.||
T Consensus 12 Rr~c~~cG~~yn~~~~~p~~g 32 (58)
T 2rgx_A 12 RRINPETGEVYHVKYNPPPPG 32 (58)
T ss_dssp EEECTTTCCEEETTTBCCCTT
T ss_pred CCCCCCHHHCCCCCCCCCCCC
T ss_conf 663641122021102566656
No 30
>>2qkd_A Zinc finger protein ZPR1; helical hairpins, beta helix, anti-parrallel beta sheet, double straded anti-parallel beta helix, metal binding protein; 2.00A {Mus musculus} (A:207-268)
Probab=45.93 E-value=19 Score=17.45 Aligned_cols=29 Identities=10% Similarity=-0.126 Sum_probs=19.8
Q ss_pred EEECCCCCCE----------------EEEEEEECCCCCCCCEEEEE
Q ss_conf 7887899782----------------44046425778676879643
Q gi|254780361|r 27 YVEDKKSGEL----------------RRPHHVDMKTGLYRGRQVFV 56 (61)
Q Consensus 27 l~~c~~cG~~----------------~~~H~vc~~cG~YkGr~Vi~ 56 (61)
-+.||+||+. .+.--.|++|| ||...|..
T Consensus 14 ~~~Cp~C~~~~~~~~~~~~IPyF~evii~s~~C~~CG-yk~~evk~ 58 (62)
T 2qkd_A 14 NTNCPECNAPAQTNMKLVQIPHFKEVIIMATNCENCG-HRTNEVKS 58 (62)
T ss_dssp EECCTTTCCTTCEEEEEECCTTSCCEEEEEEECSSSC-CEEEEEEE
T ss_pred CCCCCCCCCCCEEEEEEEECCCCCEEEEEEEECCCCC-CCCCEEEE
T ss_conf 5889888872336899972687642899997657668-85420667
No 31
>>2k2d_A Ring finger and CHY zinc finger domain- containing protein 1; zinc-binding protein, cytoplasm, metal-binding, nucleus, metal binding protein; NMR {Homo sapiens} (A:)
Probab=43.19 E-value=11 Score=18.84 Aligned_cols=31 Identities=6% Similarity=-0.262 Sum_probs=23.1
Q ss_pred CEEECCCCCCE-----EEEEEEECCCCCCCCEEEEE
Q ss_conf 37887899782-----44046425778676879643
Q gi|254780361|r 26 AYVEDKKSGEL-----RRPHHVDMKTGLYRGRQVFV 56 (61)
Q Consensus 26 ~l~~c~~cG~~-----~~~H~vc~~cG~YkGr~Vi~ 56 (61)
..+.|-.|+.. +.--+-|..||-|+-+|+-.
T Consensus 36 v~I~CNDC~~ks~v~fH~lG~KC~~C~SYNT~~~~~ 71 (79)
T 2k2d_A 36 VDILCNDCNGRSTVQFHILGMKCKICESYNTAQAGG 71 (79)
T ss_dssp EEEEESSSCCEEEEECCTTCCCCTTTSCCCEEESCC
T ss_pred EEEECCCCCCCCCEEEEEEEEECCCCCCCCCCCCCC
T ss_conf 999857888864501576312068899825111258
No 32
>>3ir9_A Peptide chain release factor subunit 1; structural genomics, APC36528.1, C-terminal domain, PSI-2, protein structure initiative; 2.21A {Methanosarcina mazei} (A:72-121)
Probab=38.47 E-value=21 Score=17.23 Aligned_cols=23 Identities=13% Similarity=-0.135 Sum_probs=11.8
Q ss_pred EEECCCCCCEEEE-------EE-----EECCCCCC
Q ss_conf 7887899782440-------46-----42577867
Q gi|254780361|r 27 YVEDKKSGELRRP-------HH-----VDMKTGLY 49 (61)
Q Consensus 27 l~~c~~cG~~~~~-------H~-----vc~~cG~Y 49 (61)
-+.|.|||-.-.- +. -||.||-.
T Consensus 7 tikC~nCgyee~~Tvk~~~~e~~~~~~~CPkCgs~ 41 (50)
T 3ir9_A 7 TTKCSVCGYENKWTRRWKPGEPAPAAGNCPKCGSS 41 (50)
T ss_dssp EEEESSSSCEEEEEECCCC--CCCCCCBCTTTCCB
T ss_pred EEECCCCCCEEEEEEECCCCCCCCCCCCCCCCCCC
T ss_conf 99758987268999704732234334568555630
No 33
>>1pqv_S STP-alpha, transcription elongation factor S-II, DNA; mRNA cleavage, proofreading, BACKTRACKING, gene expression, multiprotein complex; 3.80A {Saccharomyces cerevisiae} (S:258-309)
Probab=38.18 E-value=22 Score=17.17 Aligned_cols=29 Identities=10% Similarity=-0.135 Sum_probs=17.5
Q ss_pred HCCCCCCEEECCCCCCEEE---------------EEEEECCCCC
Q ss_conf 1026883788789978244---------------0464257786
Q gi|254780361|r 20 DALTPPAYVEDKKSGELRR---------------PHHVDMKTGL 48 (61)
Q Consensus 20 ~~l~~p~l~~c~~cG~~~~---------------~H~vc~~cG~ 48 (61)
..+.......||.||.... --.+|.+||+
T Consensus 4 ~~~~~t~~~~C~~Cg~~~~~~~~~QtRsaDE~mT~fy~C~~Cg~ 47 (52)
T 1pqv_S 4 IERSVTDRFTCGKCKEKKVSYYQLQTRSADEPLTTFCTCEACGN 47 (52)
T ss_pred HCCCCCCCEECCCCCCCCCEEEEEECCCCCCCCCEEEECCCCCC
T ss_conf 11035688689998998685754133366777664766134687
No 34
>>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} (A:)
Probab=37.58 E-value=12 Score=18.64 Aligned_cols=30 Identities=10% Similarity=-0.076 Sum_probs=19.3
Q ss_pred HHCCCCCCEEECCCCCCEE------EEEEEECCCCC
Q ss_conf 3102688378878997824------40464257786
Q gi|254780361|r 19 ADALTPPAYVEDKKSGELR------RPHHVDMKTGL 48 (61)
Q Consensus 19 h~~l~~p~l~~c~~cG~~~------~~H~vc~~cG~ 48 (61)
|..+.......|+.|++.. .....|+.|||
T Consensus 8 ~~~~~~~~~~~C~iC~e~v~ld~~g~~f~pC~eCgf 43 (93)
T 1weo_A 8 PKPLKNLDGQFCEICGDQIGLTVEGDLFVACNECGF 43 (93)
T ss_dssp SSCCSCCSSCBCSSSCCBCCBCSSSSBCCSCSSSCC
T ss_pred CCCHHHCCCCCCHHCCCCCCCCCCCCEEEEECCCCC
T ss_conf 877345155310015463352789988887523698
No 35
>>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} (I:54-122)
Probab=37.38 E-value=24 Score=16.93 Aligned_cols=26 Identities=15% Similarity=0.011 Sum_probs=17.1
Q ss_pred CCCCEEECCCCCCEEE---------------EEEEECCCCC
Q ss_conf 6883788789978244---------------0464257786
Q gi|254780361|r 23 TPPAYVEDKKSGELRR---------------PHHVDMKTGL 48 (61)
Q Consensus 23 ~~p~l~~c~~cG~~~~---------------~H~vc~~cG~ 48 (61)
.+..-..||.||.... --.+|.+||+
T Consensus 15 ~~~t~~~Cp~Cg~~ea~f~q~QtRsaDE~mT~Fy~C~~C~~ 55 (69)
T 1twf_I 15 LPRSDRECPKCHSRENVFFQSQQRRKDTSMVLFFVCLSCSH 55 (69)
T ss_dssp SCCCCCCCTTTCCCCEEEEECSSCCTTCCCCEEEEETTTCC
T ss_pred CCCCCCCCCCCCCCCCEEEEEECCCCCCCCEEEEECCCCCC
T ss_conf 65346678667998711687444667889739999699999
No 36
>>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} (A:137-176)
Probab=37.28 E-value=7 Score=19.79 Aligned_cols=30 Identities=7% Similarity=-0.100 Sum_probs=21.0
Q ss_pred ECCCCCCEEEEEEEECCCCC-CCCEEEEEEE
Q ss_conf 87899782440464257786-7687964342
Q gi|254780361|r 29 EDKKSGELRRPHHVDMKTGL-YRGRQVFVLK 58 (61)
Q Consensus 29 ~c~~cG~~~~~H~vc~~cG~-YkGr~Vi~~~ 58 (61)
.||.||...-.---|-+||. |.-.+.|+++
T Consensus 6 ~CP~C~~~~a~GDqCe~CG~~~~p~eLi~P~ 36 (40)
T 1rqg_A 6 TCPYCGAEDQKGDQCEVCGRPLTPEILINPR 36 (40)
T ss_dssp BCSSSCCSCCCTTTCSSSCCCCCTTSSBSCB
T ss_pred CCCCCCCCCCCCCEECCCCCCCCCCCCCCCC
T ss_conf 1465465545552002335433200034543
No 37
>>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} (A:)
Probab=36.92 E-value=21 Score=17.23 Aligned_cols=26 Identities=19% Similarity=0.087 Sum_probs=16.3
Q ss_pred CCCCEEECCCCCCEEEE---------------EEEECCCCC
Q ss_conf 68837887899782440---------------464257786
Q gi|254780361|r 23 TPPAYVEDKKSGELRRP---------------HHVDMKTGL 48 (61)
Q Consensus 23 ~~p~l~~c~~cG~~~~~---------------H~vc~~cG~ 48 (61)
.+.....||.||....- -.+|.+||+
T Consensus 11 ~~~~~~~C~~C~~~~a~f~q~Q~RsaDE~~T~fy~C~~C~~ 51 (57)
T 1qyp_A 11 LPTTKITCPKCGNDTAYWWEMQTRAGDEPSTIFYKCTKCGH 51 (57)
T ss_dssp SCEEECCCTTTCCSEEEEEEECCSSSSCSSEEEEEESSSCC
T ss_pred CCCCCCCCCCCCCCCEEEEEEECCCCCCCCEEEEEECCCCC
T ss_conf 79554899899798159998530336778759999289898
No 38
>>1odh_A MGCM1; transcription factor/DNA, transcription factor, DNA-binding domain, protein/DNA complex; 2.85A {Mus musculus} (A:)
Probab=36.14 E-value=20 Score=17.34 Aligned_cols=21 Identities=5% Similarity=-0.251 Sum_probs=14.4
Q ss_pred ECCCCCCEEEEEEEEC-CCCCCC
Q ss_conf 8789978244046425-778676
Q gi|254780361|r 29 EDKKSGELRRPHHVDM-KTGLYR 50 (61)
Q Consensus 29 ~c~~cG~~~~~H~vc~-~cG~Yk 50 (61)
.||||+.. |.|+-|- .||||-
T Consensus 112 ~CpnC~g~-L~~~~Crgh~gypv 133 (174)
T 1odh_A 112 SCPNCNGP-LKLIPCRGHGGFPV 133 (174)
T ss_dssp BCSSSCCB-EEEECCCTBTTBCC
T ss_pred CCCCCCCC-EEEEECCCCCCCCE
T ss_conf 99899871-57776367568722
No 39
>>1j8f_A SIRT2, sirtuin 2, isoform 1, silencing; gene regulation, transferase; 1.70A {Homo sapiens} (A:1-21,A:154-204)
Probab=35.71 E-value=15 Score=18.09 Aligned_cols=21 Identities=14% Similarity=0.158 Sum_probs=16.6
Q ss_pred CCCCCEEECCCCCCEEEEEEE
Q ss_conf 268837887899782440464
Q gi|254780361|r 22 LTPPAYVEDKKSGELRRPHHV 42 (61)
Q Consensus 22 l~~p~l~~c~~cG~~~~~H~v 42 (61)
+....+-.||.||...+|+.|
T Consensus 48 i~~~~~P~Cp~CGGilRPdVV 68 (72)
T 1j8f_A 48 IFSEVTPKCEDCQSLVKPDIV 68 (72)
T ss_dssp HHTTCCCBCTTTCCBEEEEEC
T ss_pred HCCCCCCCCCCCCCCCCCCEE
T ss_conf 404678888767984588788
No 40
>>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} (A:)
Probab=33.21 E-value=6.6 Score=19.91 Aligned_cols=25 Identities=12% Similarity=0.080 Sum_probs=18.8
Q ss_pred CCEEECCCCCCEEEE--------EEEECCCCCC
Q ss_conf 837887899782440--------4642577867
Q gi|254780361|r 25 PAYVEDKKSGELRRP--------HHVDMKTGLY 49 (61)
Q Consensus 25 p~l~~c~~cG~~~~~--------H~vc~~cG~Y 49 (61)
.....|.+||...-| +.+|-.||.|
T Consensus 7 ~~~~~C~nCgtt~Tp~WRrgp~G~~LCNACGL~ 39 (66)
T 4gat_A 7 NGPTTCTNCFTQTTPLWRRNPEGQPLCNACGLF 39 (66)
T ss_dssp SSSCCCTTTCCCCCSSCEEETTTEEECHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
T ss_conf 987988898997786543189989854467789
No 41
>>3f2b_A DNA-directed DNA polymerase III alpha chain; DNA polymerase C; HET: DGT; 2.39A {Geobacillus kaustophilus} PDB: 3f2c_A* 3f2d_A* (A:497-550)
Probab=33.07 E-value=17 Score=17.78 Aligned_cols=13 Identities=15% Similarity=0.202 Sum_probs=7.1
Q ss_pred EEEEEEEECCCCC
Q ss_conf 2440464257786
Q gi|254780361|r 36 LRRPHHVDMKTGL 48 (61)
Q Consensus 36 ~~~~H~vc~~cG~ 48 (61)
+-||...||.||.
T Consensus 27 ~DLpdk~CP~Cg~ 39 (54)
T 3f2b_A 27 FDLPDKNCPRCGT 39 (54)
T ss_dssp GGSCCCBCTTTCC
T ss_pred CCCCCCCCCHHHH
T ss_conf 7776444511202
No 42
>>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} (I:54-113)
Probab=31.34 E-value=29 Score=16.57 Aligned_cols=23 Identities=13% Similarity=0.020 Sum_probs=14.9
Q ss_pred CEEECCCCCCEEE---------------EEEEECCCCC
Q ss_conf 3788789978244---------------0464257786
Q gi|254780361|r 26 AYVEDKKSGELRR---------------PHHVDMKTGL 48 (61)
Q Consensus 26 ~l~~c~~cG~~~~---------------~H~vc~~cG~ 48 (61)
....||.||.... --.+|.+||+
T Consensus 18 ~~~~C~~Cg~~~a~~~~~Q~RsaDE~mT~fy~C~~C~~ 55 (60)
T 3h0g_I 18 SDKECPRCHQHEAVFYQTHSRRGDTMMTLIYVCVHCGF 55 (60)
T ss_dssp CCSCCSSSCCSCEEEECCCCSSCCCCCCCEEEESSSCC
T ss_pred CCCCCCCCCCCCEEEEEEECCCCCCCCEEEEECCCCCC
T ss_conf 36437448999557887522568888708999389999
No 43
>>1q14_A HST2 protein; histone deacetylase, hydrolase; 2.50A {Saccharomyces cerevisiae} (A:139-190)
Probab=29.68 E-value=29 Score=16.57 Aligned_cols=22 Identities=27% Similarity=0.350 Sum_probs=17.5
Q ss_pred CCCCCCEEECCCCCCEEEEEEE
Q ss_conf 0268837887899782440464
Q gi|254780361|r 21 ALTPPAYVEDKKSGELRRPHHV 42 (61)
Q Consensus 21 ~l~~p~l~~c~~cG~~~~~H~v 42 (61)
....+.+-.|+.||...+|..|
T Consensus 27 ~~~~~~~p~C~~Cgg~lrPdVV 48 (52)
T 1q14_A 27 EHPIKDFVKCDVCGELVKPAIV 48 (52)
T ss_dssp SSSCSCCCBCTTTCCBEEEEEC
T ss_pred HCCCCCCCCCCCCCCEECCCEE
T ss_conf 3666778888888998057788
No 44
>>1lv3_A Hypothetical protein YACG; zinc finger, rubredoxin knuckle, C4 tetrahedral Zn+2, antiparallel beta strand and alpha helix, NESG project; NMR {Escherichia coli} (A:)
Probab=29.49 E-value=37 Score=15.97 Aligned_cols=18 Identities=11% Similarity=-0.009 Sum_probs=13.9
Q ss_pred CCCCCEEECCCCCCEEEE
Q ss_conf 268837887899782440
Q gi|254780361|r 22 LTPPAYVEDKKSGELRRP 39 (61)
Q Consensus 22 l~~p~l~~c~~cG~~~~~ 39 (61)
.+.+..+.||.||.....
T Consensus 4 m~~~~~v~CP~C~k~~~w 21 (68)
T 1lv3_A 4 MSETITVNCPTCGKTVVW 21 (68)
T ss_dssp CCCCCEEECTTTCCEEEC
T ss_pred CCCCCEEECCCCCCCCCC
T ss_conf 788852058899984445
No 45
>>1ryq_A DNA-directed RNA polymerase, subunit E''; structural genomics, zinc, PSI, protein structure initiative; 1.38A {Pyrococcus furiosus} (A:)
Probab=29.47 E-value=25 Score=16.92 Aligned_cols=34 Identities=3% Similarity=-0.161 Sum_probs=23.4
Q ss_pred CCCCCCEEECCCCCCEEEEEEEECCCCC------CCCEEEE
Q ss_conf 0268837887899782440464257786------7687964
Q gi|254780361|r 21 ALTPPAYVEDKKSGELRRPHHVDMKTGL------YRGRQVF 55 (61)
Q Consensus 21 ~l~~p~l~~c~~cG~~~~~H~vc~~cG~------YkGr~Vi 55 (61)
.-....+-.|-+|+- .++-..||+||. |.|-.+|
T Consensus 5 ~~~~~~~rAC~~C~~-i~~~~~CpnC~s~~tT~~~~G~i~i 44 (69)
T 1ryq_A 5 HHHGSSEKACRHCHY-ITSEDRCPVCGSRDLSEEWFDLVII 44 (69)
T ss_dssp CBC---CEEETTTCB-EESSSSCTTTCCCCEESCEEEEEEE
T ss_pred CCCCCCCHHHHHCCC-CCCCCCCCCCCCCCCCCCCCCEEEE
T ss_conf 335630335752987-6688879897498778772408999
No 46
>>1u5k_A Hypothetical protein; OBD-fold, Zn-binding, recombination,replication; 2.00A {Deinococcus radiodurans R1} (A:83-244)
Probab=29.11 E-value=25 Score=16.88 Aligned_cols=25 Identities=16% Similarity=0.142 Sum_probs=19.2
Q ss_pred CCCCEEECCCCCCEEEEEE-------EECCCC
Q ss_conf 6883788789978244046-------425778
Q gi|254780361|r 23 TPPAYVEDKKSGELRRPHH-------VDMKTG 47 (61)
Q Consensus 23 ~~p~l~~c~~cG~~~~~H~-------vc~~cG 47 (61)
-.|.+..|..||+.-.... +|..|+
T Consensus 64 ~~p~l~~C~~cg~~~~~~fs~~~gg~vc~~c~ 95 (162)
T 1u5k_A 64 VIPQTARCARCGAPDPEHPDPLGGQLLCSKCA 95 (162)
T ss_dssp SCCCCSBCTTTCCBSCCEECTTTSSEECTTTC
T ss_pred CCCCHHHHHHCCCCCCCCCCCCCCEEECCCCC
T ss_conf 89475667504788876003213904546765
No 47
>>1h7b_A Anaerobic ribonucleotide-triphosphate reductase large chain; oxidoreductase, allosteric regulation, substrate specificity; 2.45A {Bacteriophage T4} (A:51-605)
Probab=27.56 E-value=29 Score=16.56 Aligned_cols=24 Identities=8% Similarity=-0.060 Sum_probs=9.7
Q ss_pred EEECCCCCCEEE--EEEEECCCCCCC
Q ss_conf 788789978244--046425778676
Q gi|254780361|r 27 YVEDKKSGELRR--PHHVDMKTGLYR 50 (61)
Q Consensus 27 l~~c~~cG~~~~--~H~vc~~cG~Yk 50 (61)
.-+||.||.... -.++--.||||.
T Consensus 508 ~~~CP~Cgs~~~~~~~~~~Rv~GYl~ 533 (555)
T 1h7b_A 508 GFVCSICGETDPKKMNTIRRTCAYLG 533 (555)
T ss_dssp --------------TEEEBCSSSSCB
T ss_pred CCCCCCCCCCCCCCEEEEEEEEEECC
T ss_conf 88799988877741026776545216
No 48
>>3glr_A NAD-dependent deacetylase sirtuin-3, mitochondrial; NAD dependent deacetylase, sirtuin, substrate peptide complex, hydrolase, metal-binding; HET: ALY; 1.80A {Homo sapiens} PDB: 3gls_A 3glt_A* 3glu_A (A:134-188)
Probab=26.63 E-value=25 Score=16.84 Aligned_cols=24 Identities=8% Similarity=-0.039 Sum_probs=19.1
Q ss_pred HCCCCCCEEECCCCCCEEEEEEEE
Q ss_conf 102688378878997824404642
Q gi|254780361|r 20 DALTPPAYVEDKKSGELRRPHHVD 43 (61)
Q Consensus 20 ~~l~~p~l~~c~~cG~~~~~H~vc 43 (61)
..+....+-.|+.||...+|..|-
T Consensus 23 ~~~~~~~~p~C~~Cgg~lrP~VV~ 46 (55)
T 3glr_A 23 ADVMADRVPRCPVCTGVVKPDIVF 46 (55)
T ss_dssp HHHHTTCCCBCTTTCCBEEEEECC
T ss_pred HHHHCCCCCCCCCCCCCEECCEEE
T ss_conf 333047799872346720010788
No 49
>>2waq_B DNA-directed RNA polymerase RPO2 subunit; multi-subunit, transcription; 3.35A {Sulfolobus shibatae} PDB: 2wb1_B 2pmz_B 3hkz_B (B:1056-1131)
Probab=26.05 E-value=53 Score=15.18 Aligned_cols=27 Identities=11% Similarity=-0.036 Sum_probs=18.3
Q ss_pred CEEECCCCCCE-----EEEEEEECCCCCCCCE
Q ss_conf 37887899782-----4404642577867687
Q gi|254780361|r 26 AYVEDKKSGEL-----RRPHHVDMKTGLYRGR 52 (61)
Q Consensus 26 ~l~~c~~cG~~-----~~~H~vc~~cG~YkGr 52 (61)
.+.+|.+||.. ....-.|+.||--..-
T Consensus 5 ~~~VC~~CG~i~~~~~~~~~~~C~~C~~~~~i 36 (76)
T 2waq_B 5 TIYVCDQCGYIGWYDKNKNKYVCPIHGDKSNL 36 (76)
T ss_dssp EEEECSSSCCCCCCCSSSSCCCCTTCSSSSCC
T ss_pred CEEECCCCCCEEEEECCCCCEECCCCCCCCCC
T ss_conf 30304677866888535871467635887862
No 50
>>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} (I:)
Probab=25.44 E-value=9.7 Score=19.03 Aligned_cols=21 Identities=14% Similarity=0.150 Sum_probs=14.8
Q ss_pred ECCCCCCEEEE--------EEEECCCCCC
Q ss_conf 87899782440--------4642577867
Q gi|254780361|r 29 EDKKSGELRRP--------HHVDMKTGLY 49 (61)
Q Consensus 29 ~c~~cG~~~~~--------H~vc~~cG~Y 49 (61)
.|.|||...-| ..+|..||.|
T Consensus 3 ~C~nCgtt~Tp~WRrg~~g~~LCNACGl~ 31 (43)
T 2vut_I 3 TCTNCFTQTTPLWRRNPEGQPLCNACGLF 31 (43)
T ss_dssp CCSSSCCCCCSCCEECTTSCEECHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHHHH
T ss_conf 17889896884434299989832456589
No 51
>>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious disease, electron transport; NMR {Mycobacterium tuberculosis} (A:)
Probab=25.43 E-value=39 Score=15.86 Aligned_cols=32 Identities=6% Similarity=-0.091 Sum_probs=21.1
Q ss_pred CCCCCCEEECCCCCCEEEEEE--------------------EECCCCCCCCE
Q ss_conf 026883788789978244046--------------------42577867687
Q gi|254780361|r 21 ALTPPAYVEDKKSGELRRPHH--------------------VDMKTGLYRGR 52 (61)
Q Consensus 21 ~l~~p~l~~c~~cG~~~~~H~--------------------vc~~cG~YkGr 52 (61)
.......-.|+.||-.--+-. +||.||.=+..
T Consensus 21 ~~~~~~~~~C~~CgyiYd~~~Gd~~~~i~pGT~f~~lP~~w~CPvC~~~K~~ 72 (81)
T 2kn9_A 21 SMNDYKLFRCIQCGFEYDEALGWPEDGIAAGTRWDDIPDDWSCPDCGAAKSD 72 (81)
T ss_dssp CSSCCCEEEETTTCCEEETTTCBTTTTBCTTCCTTTSCTTCCCTTTCCCGGG
T ss_pred CCCCCCEEECCCCCEEECCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCHHH
T ss_conf 7766785984999949776668846686989975679988779599895788
No 52
>>2waq_P DNA-directed RNA polymerase RPO12 subunit; multi-subunit, transcription; 3.35A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 3hkz_P (P:)
Probab=24.16 E-value=26 Score=16.74 Aligned_cols=21 Identities=14% Similarity=-0.165 Sum_probs=14.8
Q ss_pred EECCCCCCEE-------EEEEEECCCCC
Q ss_conf 8878997824-------40464257786
Q gi|254780361|r 28 VEDKKSGELR-------RPHHVDMKTGL 48 (61)
Q Consensus 28 ~~c~~cG~~~-------~~H~vc~~cG~ 48 (61)
-.|..||... +|---||-|||
T Consensus 4 Y~C~rCg~~~s~~el~~lp~irCPyCG~ 31 (48)
T 2waq_P 4 YRCGKCWKTFTDEQLKVLPGVRCPYCGY 31 (48)
T ss_dssp --CCCCSSSCCCCCSCCCSSSSCTTTCC
T ss_pred EEECCCCCCCCHHHHHHCCCCCCCCCCC
T ss_conf 8840257780687884578864463572
No 53
>>2b4y_A NAD-dependent deacetylase sirtuin-5; histone deacetylase, structural genomics, structural genomics consortium, SGC, hydrolase; HET: APR EPE; 1.90A {Homo sapiens} (A:127-194)
Probab=24.07 E-value=37 Score=15.95 Aligned_cols=18 Identities=39% Similarity=0.527 Sum_probs=14.9
Q ss_pred CCEEECCCCCCEEEEEEE
Q ss_conf 837887899782440464
Q gi|254780361|r 25 PAYVEDKKSGELRRPHHV 42 (61)
Q Consensus 25 p~l~~c~~cG~~~~~H~v 42 (61)
..+-.|+.||...+|..|
T Consensus 47 ~~~p~C~~CgG~lkPdVV 64 (68)
T 2b4y_A 47 LPRCEEAGCGGLLRPHVV 64 (68)
T ss_dssp SCBCCSTTTCCBEEEEEC
T ss_pred CCCCCCCCCCCEECCCEE
T ss_conf 553333568987477476
No 54
>>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} (A:)
Probab=23.64 E-value=43 Score=15.66 Aligned_cols=21 Identities=0% Similarity=-0.194 Sum_probs=14.7
Q ss_pred ECCCCCCEEEE---EEEECCCCCC
Q ss_conf 87899782440---4642577867
Q gi|254780361|r 29 EDKKSGELRRP---HHVDMKTGLY 49 (61)
Q Consensus 29 ~c~~cG~~~~~---H~vc~~cG~Y 49 (61)
.||.||+.... =-.|++|+.|
T Consensus 4 ~Cp~c~~~l~~~~~~~~~~~~~~~ 27 (269)
T 1p91_A 4 SCPLCHQPLSREKNSYICPQRHQF 27 (269)
T ss_dssp BCTTTCCBCEEETTEEECTTCCEE
T ss_pred ECCCCCHHHHCCCCEEEECCCCCC
T ss_conf 488998044167987993899631
No 55
>>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* (A:)
Probab=21.80 E-value=10 Score=18.96 Aligned_cols=23 Identities=17% Similarity=0.083 Sum_probs=17.3
Q ss_pred EEECCCCCCEEEE--------EEEECCCCCC
Q ss_conf 7887899782440--------4642577867
Q gi|254780361|r 27 YVEDKKSGELRRP--------HHVDMKTGLY 49 (61)
Q Consensus 27 l~~c~~cG~~~~~--------H~vc~~cG~Y 49 (61)
...|.+||...-| +.+|-.||.|
T Consensus 7 ~~~C~nCgtt~TP~WRrgp~G~~LCNACGl~ 37 (63)
T 3dfx_A 7 GTSCANCQTTTTTLWRRNANGDPVCNACGLY 37 (63)
T ss_dssp TCCCTTTCCSCCSSCCCCTTSCCCCHHHHHH
T ss_pred CCCCCCCCCCCCCEEEECCCCCCCHHHHHHH
T ss_conf 7875688986641066889999820136688
No 56
>>1yc5_A NAD-dependent deacetylase; SIR2, sirtuin, SIR2TM, SIRT1, nicotinamide, hydrolase; HET: ALY; 1.40A {Thermotoga maritima} (A:118-163)
Probab=21.14 E-value=46 Score=15.50 Aligned_cols=22 Identities=23% Similarity=0.200 Sum_probs=16.5
Q ss_pred CCCCCCEEECCCCCCEEEEEEE
Q ss_conf 0268837887899782440464
Q gi|254780361|r 21 ALTPPAYVEDKKSGELRRPHHV 42 (61)
Q Consensus 21 ~l~~p~l~~c~~cG~~~~~H~v 42 (61)
.+..-.+-.|+.||...+|-.|
T Consensus 22 ~~~~~~~P~C~~Cgg~iKPdVV 43 (46)
T 1yc5_A 22 KLESSDVPLCDDCNSLIRPNIV 43 (46)
T ss_dssp HTTTCSSCBCTTTCCBEEEEEC
T ss_pred HCCCCCCCCCCCCCCEECCCEE
T ss_conf 0023546872024873135289
No 57
>>2exu_A Transcription initiation protein SPT4/SPT5; helixs surrounding beta sheet; 2.23A {Saccharomyces cerevisiae} (A:1-91)
Probab=21.04 E-value=22 Score=17.20 Aligned_cols=24 Identities=4% Similarity=-0.230 Sum_probs=16.4
Q ss_pred CEEECCCCCCEEEE----EEEECCCCCC
Q ss_conf 37887899782440----4642577867
Q gi|254780361|r 26 AYVEDKKSGELRRP----HHVDMKTGLY 49 (61)
Q Consensus 26 ~l~~c~~cG~~~~~----H~vc~~cG~Y 49 (61)
.+-.|-.|+-..-. ...||+||.+
T Consensus 3 ~lrAC~~C~~I~t~~qF~~~gCpnC~~~ 30 (91)
T 2exu_A 3 SERACMLCGIVQTTNEFNRDGCPNCQGI 30 (91)
T ss_dssp CEEEETTTCBEEEHHHHHHHCCTTTHHH
T ss_pred CCCHHHHCCCCCCHHHHCCCCCCCCCCH
T ss_conf 4715551995302425313799997001
Done!