Query         gi|254780361|ref|YP_003064774.1| ribosomal protein L32 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 61
No_of_seqs    118 out of 665
Neff          4.8 
Searched_HMMs 23785
Date          Mon May 30 09:46:18 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780361.hhm -d /home/congqian_1/database/pdb/pdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 2j01_5 50S ribosomal protein L  99.9 6.5E-29 2.7E-33  171.0   1.6   57    1-57      4-60  (60)
  2 2zjr_Z 50S ribosomal protein L  99.9 1.2E-28 5.1E-33  169.6   2.4   57    1-57      4-60  (60)
  3 3ofq_0 50S ribosomal protein L  99.9 7.5E-26 3.1E-30  155.0   1.4   55    2-57      1-56  (56)
  4 3bbo_2 Ribosomal protein L32;   97.3 4.4E-05 1.8E-09   46.2   0.9   24    1-24      1-24  (57)
  5 2f9i_B Acetyl-coenzyme A carbo  93.6   0.026 1.1E-06   31.7   2.1   31   19-49     20-58  (285)
  6 2f9y_B Acetyl-coenzyme A carbo  91.1   0.054 2.3E-06   30.0   1.1   23   27-49     24-52  (304)
  7 2apo_B Ribosome biogenesis pro  90.6   0.077 3.3E-06   29.2   1.6   22   26-48      5-26  (60)
  8 2aus_D NOP10, ribosome biogene  88.7    0.13 5.4E-06   28.1   1.5   22   26-48      4-25  (60)
  9 3cng_A Nudix hydrolase; struct  84.0    0.41 1.7E-05   25.5   2.0   22   27-48      3-33  (189)
 10 2gnr_A Conserved hypothetical   81.6    0.72   3E-05   24.2   2.5   23   26-48     46-69  (145)
 11 1dl6_A Transcription factor II  80.3    0.29 1.2E-05   26.2   0.1   38   20-57      4-47  (58)
 12 2akl_A PHNA-like protein PA012  80.3    0.47   2E-05   25.1   1.2   29   20-48     20-52  (138)
 13 3k1f_M Transcription initiatio  75.8    0.74 3.1E-05   24.1   1.1   31   27-57     21-59  (197)
 14 3k7a_M Transcription initiatio  73.9     0.6 2.5E-05   24.5   0.3   31   26-56     20-58  (345)
 15 1nnq_A Rubrerythrin; structura  71.8     2.4  0.0001   21.4   2.9   29   24-52    136-166 (171)
 16 1vk6_A NADH pyrophosphatase; 1  71.0     1.7 7.1E-05   22.2   2.0   22   27-48    107-133 (269)
 17 2kdx_A HYPA, hydrogenase/ureas  70.5     3.3 0.00014   20.7   3.4   28   23-50     69-100 (119)
 18 1lko_A Rubrerythrin all-iron(I  69.6     1.6 6.6E-05   22.4   1.6   27   26-52    154-183 (191)
 19 3m7n_A Putative uncharacterize  67.2     1.4 5.8E-05   22.7   0.9   29   27-55    140-171 (179)
 20 1h7b_A Anaerobic ribonucleotid  65.8     1.4 5.9E-05   22.6   0.7   26   23-48    536-566 (605)
 21 3a43_A HYPD, hydrogenase nicke  64.8     3.6 0.00015   20.5   2.6   28   23-50     66-117 (139)
 22 2k2d_A Ring finger and CHY zin  61.6     2.5  0.0001   21.3   1.3   31   26-56     36-71  (79)
 23 1vq8_1 50S ribosomal protein L  60.7     4.2 0.00018   20.1   2.4   25   24-48     14-40  (57)
 24 3ga8_A HTH-type transcriptiona  59.7     3.5 0.00015   20.6   1.8   30   28-57      3-32  (78)
 25 1pft_A TFIIB, PFTFIIBN; N-term  58.1     3.9 0.00017   20.3   1.9   30   28-57      6-41  (50)
 26 2gvi_A Conserved hypothetical   57.8     2.4  0.0001   21.4   0.7   15   27-41    172-186 (204)
 27 2zkr_2 60S ribosomal protein L  55.6     4.2 0.00018   20.2   1.6   24   25-48     14-39  (97)
 28 2ct7_A Ring finger protein 31;  52.5       6 0.00025   19.3   2.1   26   23-48     21-51  (86)
 29 3dfx_A Trans-acting T-cell-spe  51.3     1.2 4.8E-05   23.1  -1.8   24   26-49      6-37  (63)
 30 3jyw_Y 60S ribosomal protein L  50.6     6.1 0.00026   19.3   1.9   25   25-49     13-39  (52)
 31 1yuz_A Nigerythrin; rubrythrin  49.4     9.8 0.00041   18.2   2.7   28   24-51    168-197 (202)
 32 1s1i_Y L35, YP55, 60S ribosoma  48.2     5.7 0.00024   19.5   1.4   24   25-48     13-38  (87)
 33 1twf_I B12.6, DNA-directed RNA  45.0     8.5 0.00036   18.5   1.9   22   27-48      4-34  (122)
 34 1odh_A MGCM1; transcription fa  43.1     9.7 0.00041   18.2   1.9   22   28-50    111-133 (174)
 35 2k4x_A 30S ribosomal protein S  39.3      11 0.00048   17.9   1.8   22   28-49     19-45  (55)
 36 1p9r_A General secretion pathw  37.6      11 0.00046   17.9   1.5   28   29-56    306-355 (418)
 37 3bvo_A CO-chaperone protein HS  37.1     8.3 0.00035   18.6   0.8   24   25-48      8-35  (207)
 38 2pzi_A Probable serine/threoni  33.8      16 0.00067   17.1   1.8   21   28-48     35-64  (681)
 39 3na7_A HP0958; flagellar bioge  29.7      16 0.00068   17.1   1.3   24   28-51    199-236 (256)
 40 1lv3_A Hypothetical protein YA  28.7      26  0.0011   16.0   2.2   17   22-38      4-20  (68)
 41 3lpe_B DNA-directed RNA polyme  28.2      18 0.00074   16.9   1.3   26   29-55      3-33  (59)
 42 3noy_A 4-hydroxy-3-methylbut-2  27.1      23 0.00098   16.2   1.7   16   21-36    265-280 (366)
 43 4gat_A Nitrogen regulatory pro  25.8     7.5 0.00031   18.8  -1.0   23   27-49      9-39  (66)
 44 1nui_A DNA primase/helicase; z  24.6      22 0.00091   16.4   1.2   22   29-50     16-43  (255)
 45 1v54_F VI, cytochrome C oxidas  23.9      19 0.00079   16.7   0.7   10   39-49     79-88  (98)
 46 2vut_I AREA, nitrogen regulato  23.5     7.8 0.00033   18.7  -1.3   21   29-49      3-31  (43)
 47 3ir9_A Peptide chain release f  22.3      24   0.001   16.2   1.0   23   27-49     78-112 (166)
 48 2nn6_I 3'-5' exoribonuclease C  21.6      28  0.0012   15.8   1.3   30   28-57    170-202 (209)
 49 3mv2_A Coatomer subunit alpha;  21.3      42  0.0018   14.9   2.1   23   26-48    286-311 (325)
 50 3mpx_A FYVE, rhogef and PH dom  20.8      17 0.00071   17.0   0.0   22   26-48    374-399 (434)
 51 2a6h_D DNA-directed RNA polyme  20.8      17 0.00073   16.9   0.1   19   29-48     57-78  (1524)
 52 3mkr_B Coatomer subunit alpha;  20.5      36  0.0015   15.3   1.6   23   26-48    277-302 (320)
 53 2l0z_A Glycoprotein G2; zinc-b  20.0      19 0.00079   16.7   0.1   14   38-52     14-32  (42)

No 1  
>2j01_5 50S ribosomal protein L32; ribosome, tRNA, paromomycin, mRNA, translation; 2.8A {Thermus thermophilus} SCOP: g.41.8.5 PDB: 2hgq_4 2hgj_4 2hgu_4 2j03_5 2jl6_5 2jl8_5 2v47_5 2v49_5 2wdi_5 2wdj_5 2wdl_5 2wdn_5 2wh2_5 2wh4_5 2wrj_5 2wrl_5 2wro_5 2wrr_5 2x9s_5 2x9u_5 ...
Probab=99.94  E-value=6.5e-29  Score=171.03  Aligned_cols=57  Identities=42%  Similarity=0.670  Sum_probs=56.0

Q ss_pred             CCCCCCCCCHHCCCCHHHHHCCCCCCEEECCCCCCEEEEEEEECCCCCCCCEEEEEE
Q ss_conf             978878876100174122310268837887899782440464257786768796434
Q gi|254780361|r    1 MAVPKRKTSPSKRGMRRSADALTPPAYVEDKKSGELRRPHHVDMKTGLYRGRQVFVL   57 (61)
Q Consensus         1 MAVPKrK~S~sr~~~RRsh~~l~~p~l~~c~~cG~~~~~H~vc~~cG~YkGr~Vi~~   57 (61)
                      |||||+|+|+||+++|||||+|++|+|+.||+||++++||+||++||||+|||||++
T Consensus         4 ~~VPKrk~Sksr~~~RRsh~~l~~p~l~~C~~CG~~~~pHrvC~~CG~YkGr~Vi~v   60 (60)
T 2j01_5            4 HPVPKKKTSKARRDARRSHHALTPPTLVPCPECKAMKPPHTVCPECGYYAGRKVLEV   60 (60)
T ss_dssp             SSCCSSCCCHHHHHHHHGGGCCCCCCCBCCSSSSSCBCTTCBCTTTCCSSSCCSCCC
T ss_pred             CCCCCCCCCCCCCHHHHCCCCCCCCCEEECCCCCCEECCCEECCCCCCCCCEEEEEC
T ss_conf             788878667201222201311258834689999970267368798981999985769


No 2  
>2zjr_Z 50S ribosomal protein L32; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.5 PDB: 1j5a_M* 1jzy_M* 1jzz_M* 1k01_M* 1nkw_Z 1ond_Z* 1sm1_Z* 1yl3_5 2b66_5 2b9n_5 2b9p_5 2zjp_Y* 2zjq_Z 1jzx_M 3cf5_Y* 3dll_Y* 1nwy_Z* 1nwx_Z* 1xbp_Z* 1pnu_Z ...
Probab=99.94  E-value=1.2e-28  Score=169.63  Aligned_cols=57  Identities=46%  Similarity=0.635  Sum_probs=56.0

Q ss_pred             CCCCCCCCCHHCCCCHHHHHCCCCCCEEECCCCCCEEEEEEEECCCCCCCCEEEEEE
Q ss_conf             978878876100174122310268837887899782440464257786768796434
Q gi|254780361|r    1 MAVPKRKTSPSKRGMRRSADALTPPAYVEDKKSGELRRPHHVDMKTGLYRGRQVFVL   57 (61)
Q Consensus         1 MAVPKrK~S~sr~~~RRsh~~l~~p~l~~c~~cG~~~~~H~vc~~cG~YkGr~Vi~~   57 (61)
                      |||||+|+|+||+++|||||+|++|+|+.||+||++++||+||++||||+|||||++
T Consensus         4 ~~VPKrk~Sksrr~~RRsh~~l~~~~l~~C~~cG~~~~~H~vc~~CG~YkGr~Vi~v   60 (60)
T 2zjr_Z            4 HPVPKKKTSKSKRDMRRSHHALTAPNLTECPQCHGKKLSHHICPNCGYYDGRQVLAV   60 (60)
T ss_dssp             CSCCSSCCCTTHHHHHTTTCCCCCCCCEECTTTCCEECTTBCCTTTCBSSSBCSCC-
T ss_pred             CCCCCCCCCCCCCHHHHCCCCCCCCCEEECCCCCCCCCCCEECCCCCCCCCEEEEEC
T ss_conf             787878667201310101210248861688999986367267798980999986769


No 3  
>3ofq_0 50S ribosomal protein L32; protein biosynthesis, ribosomes, RNA, tRNA, transfer, antibi EXIT, peptidyl, ribosomal subunit, large; 3.10A {Escherichia coli} PDB: 1p85_Z 1p86_Z 2awb_0 2aw4_0 2i2v_0 2j28_0 2i2t_0* 2qao_0* 2qba_0* 2qbc_0* 2qbe_0 2qbg_0 2qbi_0* 2qbk_0* 2qov_0 2qox_0 2qoz_0* 2qp1_0* 2rdo_0 2vhm_0 ...
Probab=99.91  E-value=7.5e-26  Score=155.01  Aligned_cols=55  Identities=51%  Similarity=0.726  Sum_probs=52.2

Q ss_pred             CCCCCCCCHHCCCCHHHHHCCCC-CCEEECCCCCCEEEEEEEECCCCCCCCEEEEEE
Q ss_conf             78878876100174122310268-837887899782440464257786768796434
Q gi|254780361|r    2 AVPKRKTSPSKRGMRRSADALTP-PAYVEDKKSGELRRPHHVDMKTGLYRGRQVFVL   57 (61)
Q Consensus         2 AVPKrK~S~sr~~~RRsh~~l~~-p~l~~c~~cG~~~~~H~vc~~cG~YkGr~Vi~~   57 (61)
                      ||||+|+|+||+++|||||+|.. |+|+.||+||++++||+||+ ||||+|||||+.
T Consensus         1 AVPKrK~S~sR~~~RRah~~~~~~~~l~~C~~CG~~~~pH~vC~-cG~Y~Gr~Vi~k   56 (56)
T 3ofq_0            1 AVQQNKPTRSKRGMRRSHDALTAVTSLSVDKTSGEKHLRHHITA-DGYYRGRKVIAK   56 (56)
T ss_dssp             CCCSSCCCSHHHHHHHGGGCCCCCCCCBCCSSSCCCBCSSSCCT-TSBCSSCBCCCC
T ss_pred             CCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCEECC-CCCCCCEEEECC
T ss_conf             98766687200623121122105876226889998605857889-988989980409


No 4  
>3bbo_2 Ribosomal protein L32; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=97.30  E-value=4.4e-05  Score=46.22  Aligned_cols=24  Identities=38%  Similarity=0.448  Sum_probs=21.5

Q ss_pred             CCCCCCCCCHHCCCCHHHHHCCCC
Q ss_conf             978878876100174122310268
Q gi|254780361|r    1 MAVPKRKTSPSKRGMRRSADALTP   24 (61)
Q Consensus         1 MAVPKrK~S~sr~~~RRsh~~l~~   24 (61)
                      |||||.|+|.|+++.|++.|+...
T Consensus         1 MAVPKKrtS~skk~iRk~~Wk~k~   24 (57)
T 3bbo_2            1 MAVPKKRTSIYKKRIRKNIWKKKG   24 (57)
T ss_dssp             CCCCSSCCCTTHHHHTTSTTCCCT
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf             998955330788999999999999


No 5  
>2f9i_B Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta; zinc ribbon, crotonase superfamily, spiral domain; 1.98A {Staphylococcus aureus}
Probab=93.62  E-value=0.026  Score=31.69  Aligned_cols=31  Identities=13%  Similarity=0.034  Sum_probs=22.2

Q ss_pred             HHCCCCCC--EEECCCCCCEEE------EEEEECCCCCC
Q ss_conf             31026883--788789978244------04642577867
Q gi|254780361|r   19 ADALTPPA--YVEDKKSGELRR------PHHVDMKTGLY   49 (61)
Q Consensus        19 h~~l~~p~--l~~c~~cG~~~~------~H~vc~~cG~Y   49 (61)
                      ..+...|.  -++||+||+...      -..|||+|||+
T Consensus        20 ~~k~~~p~~lW~kCp~C~~~i~~~dl~~n~~VCp~C~~H   58 (285)
T 2f9i_B           20 SKNNDVPAGIMTKCPKCKKIMYTKELAENLNVCFNCDHH   58 (285)
T ss_dssp             ------CCSSEEECTTTCCEEEHHHHHHTTTBCTTTCCB
T ss_pred             CCCCCCCCCCEECCCCCCCHHHHHHHHHHCCCCCCCCCC
T ss_conf             344789998630288887313299999848889099799


No 6  
>2f9y_B Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta; zinc ribbon, crotonase superfamily, spiral domain, ligase; 3.20A {Escherichia coli} SCOP: c.14.1.4
Probab=91.10  E-value=0.054  Score=30.02  Aligned_cols=23  Identities=13%  Similarity=0.046  Sum_probs=18.9

Q ss_pred             EEECCCCCCEEE------EEEEECCCCCC
Q ss_conf             788789978244------04642577867
Q gi|254780361|r   27 YVEDKKSGELRR------PHHVDMKTGLY   49 (61)
Q Consensus        27 l~~c~~cG~~~~------~H~vc~~cG~Y   49 (61)
                      -++||+||+...      -..|||+|||.
T Consensus        24 W~kC~~C~~~~~~~~l~~n~~vCp~C~~H   52 (304)
T 2f9y_B           24 WTKCDSCGQVLYRAELERNLEVCPKCDHH   52 (304)
T ss_dssp             EECCTTTCCCEETTHHHHTTTBCTTTCCB
T ss_pred             CCCCCCCCCEEEHHHHHHHCCCCCCCCCC
T ss_conf             21387877631599999848899499898


No 7  
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=90.64  E-value=0.077  Score=29.22  Aligned_cols=22  Identities=18%  Similarity=0.072  Sum_probs=18.8

Q ss_pred             CEEECCCCCCEEEEEEEECCCCC
Q ss_conf             37887899782440464257786
Q gi|254780361|r   26 AYVEDKKSGELRRPHHVDMKTGL   48 (61)
Q Consensus        26 ~l~~c~~cG~~~~~H~vc~~cG~   48 (61)
                      -|..|+.||.+.| -.+||.||-
T Consensus         5 kirkC~~C~~YTL-~~~Cp~CG~   26 (60)
T 2apo_B            5 RMKKCPKCGLYTL-KEICPKCGE   26 (60)
T ss_dssp             CCEECTTTCCEES-SSBCSSSCS
T ss_pred             HHHHCCCCCCEEC-CCCCCCCCC
T ss_conf             6651874666535-453767878


No 8  
>2aus_D NOP10, ribosome biogenesis protein NOP10; isomerase, structural protein, isomerase/structural protein complex; 2.10A {Pyrococcus abyssi} PDB: 3lwr_B 3lwo_B* 3lwq_B* 3lwp_B 3lwv_B 3hax_C* 2hvy_C* 3hay_C* 2ey4_E 3hjw_B* 2rfk_B* 3hjy_B
Probab=88.74  E-value=0.13  Score=28.07  Aligned_cols=22  Identities=14%  Similarity=-0.013  Sum_probs=18.6

Q ss_pred             CEEECCCCCCEEEEEEEECCCCC
Q ss_conf             37887899782440464257786
Q gi|254780361|r   26 AYVEDKKSGELRRPHHVDMKTGL   48 (61)
Q Consensus        26 ~l~~c~~cG~~~~~H~vc~~cG~   48 (61)
                      .|..|+.||.+.| -.+||.||-
T Consensus         4 ~irkC~~C~~YTL-k~~CP~CG~   25 (60)
T 2aus_D            4 RIRKCPKCGRYTL-KETCPVCGE   25 (60)
T ss_dssp             CCEECTTTCCEES-SSBCTTTCS
T ss_pred             HHHCCCCCCCEEC-CCCCCCCCC
T ss_conf             4114874666635-563767878


No 9  
>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protein structure initiative, midwest center for structural genomics; 2.00A {Nitrosomonas europaea atcc 19718}
Probab=84.03  E-value=0.41  Score=25.45  Aligned_cols=22  Identities=14%  Similarity=-0.076  Sum_probs=16.6

Q ss_pred             EEECCCCCCEEE---------EEEEECCCCC
Q ss_conf             788789978244---------0464257786
Q gi|254780361|r   27 YVEDKKSGELRR---------PHHVDMKTGL   48 (61)
Q Consensus        27 l~~c~~cG~~~~---------~H~vc~~cG~   48 (61)
                      +-.||+||....         +..+|++||+
T Consensus         3 ~~yCp~CG~~~~~~~~~g~~~~~~~C~~C~~   33 (189)
T 3cng_A            3 MKFCSQCGGEVILRIPEGDTLPRYICPKCHT   33 (189)
T ss_dssp             CCBCTTTCCBCEEECCTTCSSCEEEETTTTE
T ss_pred             CEECCCCCCCCEECCCCCCCCEEEECCCCCC
T ss_conf             6058467875640346889724753799997


No 10 
>2gnr_A Conserved hypothetical protein; 13815350, structural genomics, PSI, protein structure initiative; 1.80A {Sulfolobus solfataricus P2} SCOP: b.40.4.15 PDB: 3irb_A
Probab=81.59  E-value=0.72  Score=24.16  Aligned_cols=23  Identities=9%  Similarity=-0.123  Sum_probs=19.0

Q ss_pred             CEEECCCCCCEEE-EEEEECCCCC
Q ss_conf             3788789978244-0464257786
Q gi|254780361|r   26 AYVEDKKSGELRR-PHHVDMKTGL   48 (61)
Q Consensus        26 ~l~~c~~cG~~~~-~H~vc~~cG~   48 (61)
                      -+..|++||.... |..+|+.||-
T Consensus        46 ~~~rC~~Cg~~~~Ppr~~Cp~C~s   69 (145)
T 2gnr_A           46 IGSKCSKCGRIFVPARSYCEHCFV   69 (145)
T ss_dssp             EEEECTTTCCEEESCCSEETTTTE
T ss_pred             EEEECCCCCCEEECCCCCCCCCCC
T ss_conf             999879999588396011779999


No 11 
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=80.33  E-value=0.29  Score=26.22  Aligned_cols=38  Identities=16%  Similarity=0.091  Sum_probs=26.9

Q ss_pred             HCCCCCCEEECCCCCCEEE------EEEEECCCCCCCCEEEEEE
Q ss_conf             1026883788789978244------0464257786768796434
Q gi|254780361|r   20 DALTPPAYVEDKKSGELRR------PHHVDMKTGLYRGRQVFVL   57 (61)
Q Consensus        20 ~~l~~p~l~~c~~cG~~~~------~H~vc~~cG~YkGr~Vi~~   57 (61)
                      -++....-.+||+||...+      -..||..||+--.-.+|+.
T Consensus         4 ~~~~~~~~~~Cp~Cgs~~iv~D~~~Ge~vC~~CG~Vlee~~ID~   47 (58)
T 1dl6_A            4 SRLDALPRVTCPNHPDAILVEDYRAGDMICPECGLVVGDRVIDV   47 (58)
T ss_dssp             CSCCCCSCCSBTTBSSSCCEECSSSCCEECTTTCCEECCSCCCC
T ss_pred             CCCCCCCCCCCCCCCCCCEEEECCCCEEECCCCCCEECCCCCCC
T ss_conf             42325675589698798777888899187278998924331368


No 12 
>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5
Probab=80.31  E-value=0.47  Score=25.09  Aligned_cols=29  Identities=3%  Similarity=-0.192  Sum_probs=21.1

Q ss_pred             HCCCCCCEEECCCCCCEEE----EEEEECCCCC
Q ss_conf             1026883788789978244----0464257786
Q gi|254780361|r   20 DALTPPAYVEDKKSGELRR----PHHVDMKTGL   48 (61)
Q Consensus        20 ~~l~~p~l~~c~~cG~~~~----~H~vc~~cG~   48 (61)
                      ......+|-.||+|+..-.    ...+||.||+
T Consensus        20 ~~~~mstlP~CP~C~seytY~dg~~~vCPeC~h   52 (138)
T 2akl_A           20 QGHMVSTLPPCPQCNSEYTYEDGALLVCPECAH   52 (138)
T ss_dssp             ---CCCCSCCCTTTCCCCCEECSSSEEETTTTE
T ss_pred             CCCCCCCCCCCCCCCCCCEECCCCEEECCCCCC
T ss_conf             378567898898889902373799888987637


No 13 
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, transcription factor, DNA-binding, DNA-directed RNA polymerase; 4.30A {Saccharomyces cerevisiae}
Probab=75.80  E-value=0.74  Score=24.09  Aligned_cols=31  Identities=10%  Similarity=-0.014  Sum_probs=22.1

Q ss_pred             EEECCCCCCE--E------EEEEEECCCCCCCCEEEEEE
Q ss_conf             7887899782--4------40464257786768796434
Q gi|254780361|r   27 YVEDKKSGEL--R------RPHHVDMKTGLYRGRQVFVL   57 (61)
Q Consensus        27 l~~c~~cG~~--~------~~H~vc~~cG~YkGr~Vi~~   57 (61)
                      ...||.||..  .      .--.||..||+--+-.+|+.
T Consensus        21 tl~CPeCGS~~t~IVeD~s~GEiVCsdCGLVIEErIIDe   59 (197)
T 3k1f_M           21 VLTCPECKVYPPKIVERFSEGDVVCALCGLVLSDKLVDT   59 (197)
T ss_dssp             CCCCTTTCCSSCCEEEEGGGTEEEETTTCBBCCCCCBCH
T ss_pred             EEECCCCCCCCCEEEEECCCCCEECCCCCEEECCCCCCC
T ss_conf             468999999899898979989689714892924533579


No 14 
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=73.90  E-value=0.6  Score=24.55  Aligned_cols=31  Identities=10%  Similarity=-0.008  Sum_probs=19.9

Q ss_pred             CEEECCCCCCE--E------EEEEEECCCCCCCCEEEEE
Q ss_conf             37887899782--4------4046425778676879643
Q gi|254780361|r   26 AYVEDKKSGEL--R------RPHHVDMKTGLYRGRQVFV   56 (61)
Q Consensus        26 ~l~~c~~cG~~--~------~~H~vc~~cG~YkGr~Vi~   56 (61)
                      ....||+||+.  .      .-..||..||+--.-.+|+
T Consensus        20 ~~~~C~~C~~~~~~iv~D~~~G~~vC~~CG~Vl~e~~id   58 (345)
T 3k7a_M           20 IVLTCPECKVYPPKIVERFSEGDVVCALCGLVLSDKLVD   58 (345)
T ss_dssp             CCCCCSTTCCSCCCCCCCSSSCSCCCSSSCCCCCCCCCC
T ss_pred             CCEECCCCCCCCCCEEEECCCCCEECCCCCCCCCCCCCC
T ss_conf             031895999999864678788988314688780464455


No 15 
>1nnq_A Rubrerythrin; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics, secsg; 2.35A {Pyrococcus furiosus} SCOP: a.25.1.1 g.41.5.1 PDB: 2hr5_A
Probab=71.78  E-value=2.4  Score=21.40  Aligned_cols=29  Identities=7%  Similarity=-0.189  Sum_probs=19.8

Q ss_pred             CCCEEECCCCCCEEE--EEEEECCCCCCCCE
Q ss_conf             883788789978244--04642577867687
Q gi|254780361|r   24 PPAYVEDKKSGELRR--PHHVDMKTGLYRGR   52 (61)
Q Consensus        24 ~p~l~~c~~cG~~~~--~H~vc~~cG~YkGr   52 (61)
                      .+.+-+|++||-...  +=-+||.||.=++.
T Consensus       136 ~~~~~vC~~CG~i~~g~~P~~CPvC~~p~~~  166 (171)
T 1nnq_A          136 IKKVYICPICGYTAVDEAPEYCPVCGAPKEK  166 (171)
T ss_dssp             CSCEEECTTTCCEEESCCCSBCTTTCCBGGG
T ss_pred             CCCEEECCCCCCCCCCCCCCCCCCCCCCHHH
T ss_conf             7873589989393899999979799996767


No 16 
>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; HET: MSE; 2.20A {Escherichia coli K12} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A
Probab=71.04  E-value=1.7  Score=22.20  Aligned_cols=22  Identities=9%  Similarity=-0.188  Sum_probs=16.3

Q ss_pred             EEECCCCCCEEEEE-----EEECCCCC
Q ss_conf             78878997824404-----64257786
Q gi|254780361|r   27 YVEDKKSGELRRPH-----HVDMKTGL   48 (61)
Q Consensus        27 l~~c~~cG~~~~~H-----~vc~~cG~   48 (61)
                      ...||.||....+.     +.|++||+
T Consensus       107 ~rfC~~CG~~~~~~~~~~~~~C~~C~~  133 (269)
T 1vk6_A          107 HKYCGYCGHEMYPSKTEWAMLCSHCRE  133 (269)
T ss_dssp             TSBCTTTCCBEEECSSSSCEEESSSSC
T ss_pred             CCCCCCCCCCCCCCCCCEEEECCCCCC
T ss_conf             986866798774367980488989988


No 17 
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=70.49  E-value=3.3  Score=20.72  Aligned_cols=28  Identities=18%  Similarity=0.071  Sum_probs=20.3

Q ss_pred             CCCCEEECCCCCCEEEE---EE-EECCCCCCC
Q ss_conf             68837887899782440---46-425778676
Q gi|254780361|r   23 TPPAYVEDKKSGELRRP---HH-VDMKTGLYR   50 (61)
Q Consensus        23 ~~p~l~~c~~cG~~~~~---H~-vc~~cG~Yk   50 (61)
                      ..|....|++||..--+   +. .||.||-+.
T Consensus        69 ~~p~~~~C~~Cg~~~~~~~~~~~~CP~Cgs~~  100 (119)
T 2kdx_A           69 DEKVELECKDCSHVFKPNALDYGVCEKCHSKN  100 (119)
T ss_dssp             EECCEEECSSSSCEECSCCSTTCCCSSSSSCC
T ss_pred             ECCCEEECCCCCCEECCCCCCCCCCCCCCCCC
T ss_conf             62867898789988334775477290978999


No 18 
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubredoxin-like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=69.64  E-value=1.6  Score=22.37  Aligned_cols=27  Identities=4%  Similarity=-0.027  Sum_probs=19.5

Q ss_pred             CEEECCCCCCEEE---EEEEECCCCCCCCE
Q ss_conf             3788789978244---04642577867687
Q gi|254780361|r   26 AYVEDKKSGELRR---PHHVDMKTGLYRGR   52 (61)
Q Consensus        26 ~l~~c~~cG~~~~---~H~vc~~cG~YkGr   52 (61)
                      ..-.|++||-...   |=-+||.||.=++.
T Consensus       154 ~~~~C~~CG~i~~g~~~p~~CP~C~~~~~~  183 (191)
T 1lko_A          154 TKWRCRNCGYVHEGTGAPELCPACAHPKAH  183 (191)
T ss_dssp             EEEEETTTCCEEEEEECCSBCTTTCCBGGG
T ss_pred             CEEECCCCCCCCCCCCCCCCCCCCCCCHHH
T ss_conf             457899998601289998859799996598


No 19 
>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A
Probab=67.24  E-value=1.4  Score=22.67  Aligned_cols=29  Identities=7%  Similarity=-0.156  Sum_probs=21.9

Q ss_pred             EEECCCCCCEEEEEE---EECCCCCCCCEEEE
Q ss_conf             788789978244046---42577867687964
Q gi|254780361|r   27 YVEDKKSGELRRPHH---VDMKTGLYRGRQVF   55 (61)
Q Consensus        27 l~~c~~cG~~~~~H~---vc~~cG~YkGr~Vi   55 (61)
                      +..|+.||.+..+-.   .||+||+.--|+|-
T Consensus       140 ~a~c~~c~~~l~~~~~~~~C~~cg~~e~RKva  171 (179)
T 3m7n_A          140 RALCSNCKTEMVREGDILKCPECGRVEKRKIS  171 (179)
T ss_dssp             ECBCTTTCCBCEECSSSEECSSSCCEECCCBC
T ss_pred             EEECCCCCCEEEEECCEEECCCCCCEEEEEEC
T ss_conf             99678778607770999999999987832250


No 20 
>1h7b_A Anaerobic ribonucleotide-triphosphate reductase large chain; oxidoreductase, allosteric regulation, substrate specificity; 2.45A {Bacteriophage T4} SCOP: c.7.1.3 PDB: 1h79_A* 1h7a_A* 1h78_A 1hk8_A*
Probab=65.79  E-value=1.4  Score=22.61  Aligned_cols=26  Identities=12%  Similarity=-0.086  Sum_probs=17.0

Q ss_pred             CCCCEEECCCCCCEEEE----E-EEECCCCC
Q ss_conf             68837887899782440----4-64257786
Q gi|254780361|r   23 TPPAYVEDKKSGELRRP----H-HVDMKTGL   48 (61)
Q Consensus        23 ~~p~l~~c~~cG~~~~~----H-~vc~~cG~   48 (61)
                      ..+.+..|.+||-..-.    | ..||.||-
T Consensus       536 ~n~~~~~C~~Cg~~~~~~~~e~~~~CP~CG~  566 (605)
T 1h7b_A          536 VNMPVDKCFTCGSTHEMTPTENGFVCSICGE  566 (605)
T ss_dssp             EECCEEET-----------------------
T ss_pred             ECCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             2868975777898786045777983908969


No 21 
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=64.80  E-value=3.6  Score=20.51  Aligned_cols=28  Identities=11%  Similarity=-0.075  Sum_probs=20.4

Q ss_pred             CCCCEEECCCCCCEEEEE------------------------EEECCCCCCC
Q ss_conf             688378878997824404------------------------6425778676
Q gi|254780361|r   23 TPPAYVEDKKSGELRRPH------------------------HVDMKTGLYR   50 (61)
Q Consensus        23 ~~p~l~~c~~cG~~~~~H------------------------~vc~~cG~Yk   50 (61)
                      ..|....|.+||.---+-                        -.||.||-+.
T Consensus        66 ~~p~~~~C~~Cg~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~CP~Cgs~~  117 (139)
T 3a43_A           66 EEEAVFKCRNCNYEWKLKEVKDKFDERIKEDIHFIPEVVHAFLACPKCGSHD  117 (139)
T ss_dssp             EECCEEEETTTCCEEEGGGCTTCCSCCCGGGCCCCGGGCGGGCSCSSSSCCC
T ss_pred             EECCEEECCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             7087389867898411142000112111222233432346554791976988


No 22 
>2k2d_A Ring finger and CHY zinc finger domain- containing protein 1; zinc-binding protein, cytoplasm, metal-binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=61.58  E-value=2.5  Score=21.34  Aligned_cols=31  Identities=6%  Similarity=-0.262  Sum_probs=23.3

Q ss_pred             CEEECCCCCCE-----EEEEEEECCCCCCCCEEEEE
Q ss_conf             37887899782-----44046425778676879643
Q gi|254780361|r   26 AYVEDKKSGEL-----RRPHHVDMKTGLYRGRQVFV   56 (61)
Q Consensus        26 ~l~~c~~cG~~-----~~~H~vc~~cG~YkGr~Vi~   56 (61)
                      ..+.|-.|++.     +.--+-|+.||-|+-+|+-.
T Consensus        36 v~IlCNDC~~ks~v~fH~lg~KC~~C~SYNT~q~~~   71 (79)
T 2k2d_A           36 VDILCNDCNGRSTVQFHILGMKCKICESYNTAQAGG   71 (79)
T ss_dssp             EEEEESSSCCEEEEECCTTCCCCTTTSCCCEEESCC
T ss_pred             EEEECCCCCCCCCEEEEEEEECCCCCCCCCCCCCCC
T ss_conf             799837888864500586311068899916332357


No 23 
>1vq8_1 50S ribosomal protein L37E; ribosome 50S, protein-protein complex, RNA-RNA complex, protein-RNA complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.2 PDB: 1vq4_1* 1vq5_1* 1vq6_1* 1vq7_1* 1s72_1* 1vq9_1* 1vqk_1* 1vql_1* 1vqm_1* 1vqn_1* 1vqo_1* 1vqp_1* 1yhq_1* 1yi2_1* 1yij_1* 1yit_1* 1yj9_1* 1yjn_1* 1yjw_1* 2otj_1* ...
Probab=60.74  E-value=4.2  Score=20.14  Aligned_cols=25  Identities=16%  Similarity=0.272  Sum_probs=21.4

Q ss_pred             CCCEEECCCCCC--EEEEEEEECCCCC
Q ss_conf             883788789978--2440464257786
Q gi|254780361|r   24 PPAYVEDKKSGE--LRRPHHVDMKTGL   48 (61)
Q Consensus        24 ~p~l~~c~~cG~--~~~~H~vc~~cG~   48 (61)
                      ..+-+.|.-||.  +++....|.+|||
T Consensus        14 ~ktH~~CrRCG~~syH~qK~~CasCGy   40 (57)
T 1vq8_1           14 TTTHTKCRRCGEKSYHTKKKVCSSCGF   40 (57)
T ss_dssp             CCCEEECTTTCSEEEETTTTEETTTCT
T ss_pred             CCCCCHHCCCCCHHHHHCCCCCCCCCC
T ss_conf             875062027582244332362331588


No 24 
>3ga8_A HTH-type transcriptional regulator MQSA (YGIT/B3021); helix-turn-helix, Zn-binding protein, DNA-binding, transcription regulation; HET: PE4; 1.70A {Escherichia coli k-12} PDB: 3hi2_A
Probab=59.71  E-value=3.5  Score=20.56  Aligned_cols=30  Identities=10%  Similarity=0.050  Sum_probs=23.0

Q ss_pred             EECCCCCCEEEEEEEECCCCCCCCEEEEEE
Q ss_conf             887899782440464257786768796434
Q gi|254780361|r   28 VEDKKSGELRRPHHVDMKTGLYRGRQVFVL   57 (61)
Q Consensus        28 ~~c~~cG~~~~~H~vc~~cG~YkGr~Vi~~   57 (61)
                      ..||.||+-.|-|.+=+.-=.|+|...+..
T Consensus         3 MkCPiCg~g~L~~~~r~~~~tYkG~s~~i~   32 (78)
T 3ga8_A            3 MKCPVCHQGEMVSGIKDIPYTFRGRKTVLK   32 (78)
T ss_dssp             CBCTTTSSSBEEEEEEEEEEEETTEEEEEE
T ss_pred             CCCCCCCCCEEECCEEEEEEEECCEEEEEC
T ss_conf             608858983336331555899898999976


No 25 
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=58.06  E-value=3.9  Score=20.28  Aligned_cols=30  Identities=10%  Similarity=-0.065  Sum_probs=20.0

Q ss_pred             EECCCCCCEEEE------EEEECCCCCCCCEEEEEE
Q ss_conf             887899782440------464257786768796434
Q gi|254780361|r   28 VEDKKSGELRRP------HHVDMKTGLYRGRQVFVL   57 (61)
Q Consensus        28 ~~c~~cG~~~~~------H~vc~~cG~YkGr~Vi~~   57 (61)
                      ..||+||...+-      -.||.+||+--.-.+|+.
T Consensus         6 ~~Cp~Cgs~~iv~D~~~Ge~vC~~CG~V~~e~~ID~   41 (50)
T 1pft_A            6 KVCPACESAELIYDPERGEIVCAKCGYVIEENIIDM   41 (50)
T ss_dssp             CSCTTTSCCCEEEETTTTEEEESSSCCBCCCCCCCC
T ss_pred             CCCCCCCCCCEEEECCCCEEECCCCCCEECCCCCCC
T ss_conf             538598898378868889286278985933242458


No 26 
>2gvi_A Conserved hypothetical protein; 10640422, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 1.87A {Thermoplasma acidophilum} SCOP: d.81.3.1 g.39.1.18
Probab=57.79  E-value=2.4  Score=21.40  Aligned_cols=15  Identities=20%  Similarity=0.107  Sum_probs=12.4

Q ss_pred             EEECCCCCCEEEEEE
Q ss_conf             788789978244046
Q gi|254780361|r   27 YVEDKKSGELRRPHH   41 (61)
Q Consensus        27 l~~c~~cG~~~~~H~   41 (61)
                      .+.|..|||+.+-.+
T Consensus       172 ~v~C~~CGE~v~e~r  186 (204)
T 2gvi_A          172 KVRCDVCGEYTYEAD  186 (204)
T ss_dssp             EEECTTTCCEEEGGG
T ss_pred             CEECCCCCCCCCCCC
T ss_conf             519998997223240


No 27 
>2zkr_2 60S ribosomal protein L37E; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} SCOP: i.1.1.1
Probab=55.63  E-value=4.2  Score=20.15  Aligned_cols=24  Identities=13%  Similarity=0.076  Sum_probs=20.9

Q ss_pred             CCEEECCCCCC--EEEEEEEECCCCC
Q ss_conf             83788789978--2440464257786
Q gi|254780361|r   25 PAYVEDKKSGE--LRRPHHVDMKTGL   48 (61)
Q Consensus        25 p~l~~c~~cG~--~~~~H~vc~~cG~   48 (61)
                      .+-+.|--||.  +++....|.+|||
T Consensus        14 KtH~lCrRCG~~syH~qK~~CasCGy   39 (97)
T 2zkr_2           14 KTHTLCRRCGSKAYHLQKSTCGKCGY   39 (97)
T ss_dssp             CCEECCTTTCSSCEETTSCCBTTTCT
T ss_pred             CCCCHHCCCCCHHHHCCCCCCCCCCC
T ss_conf             76451027696244303030100389


No 28 
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=52.52  E-value=6  Score=19.31  Aligned_cols=26  Identities=4%  Similarity=-0.164  Sum_probs=19.4

Q ss_pred             CCCCEEECCCCCCEE-----EEEEEECCCCC
Q ss_conf             688378878997824-----40464257786
Q gi|254780361|r   23 TPPAYVEDKKSGELR-----RPHHVDMKTGL   48 (61)
Q Consensus        23 ~~p~l~~c~~cG~~~-----~~H~vc~~cG~   48 (61)
                      ..|++.-||+|+...     -++-+|+.||+
T Consensus        21 ~~~~~~~CP~C~~~~~~~~~~~~~~C~~C~~   51 (86)
T 2ct7_A           21 RDPKFLWCAQCSFGFIYEREQLEATCPQCHQ   51 (86)
T ss_dssp             SCCCEECCSSSCCCEECCCSCSCEECTTTCC
T ss_pred             HCCCCCCCCCCCCEEEECCCCCEEEECCCCC
T ss_conf             5889749989994488679999888499999


No 29 
>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A*
Probab=51.32  E-value=1.2  Score=23.07  Aligned_cols=24  Identities=21%  Similarity=0.113  Sum_probs=17.9

Q ss_pred             CEEECCCCCCEEEE--------EEEECCCCCC
Q ss_conf             37887899782440--------4642577867
Q gi|254780361|r   26 AYVEDKKSGELRRP--------HHVDMKTGLY   49 (61)
Q Consensus        26 ~l~~c~~cG~~~~~--------H~vc~~cG~Y   49 (61)
                      ....|.|||...-|        +-+|-.||.|
T Consensus         6 ~g~~C~NC~t~~TpLWRR~~~G~~lCNACGLy   37 (63)
T 3dfx_A            6 AGTSCANCQTTTTTLWRRNANGDPVCNACGLY   37 (63)
T ss_dssp             TTCCCTTTCCSCCSSCCCCTTSCCCCHHHHHH
T ss_pred             CCCCCCCCCCCCCCEEEECCCCCEEEEHHHHH
T ss_conf             88745688986542065889989821145778


No 30 
>3jyw_Y 60S ribosomal protein L37(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=50.64  E-value=6.1  Score=19.27  Aligned_cols=25  Identities=8%  Similarity=0.042  Sum_probs=20.7

Q ss_pred             CCEEECCCCCC--EEEEEEEECCCCCC
Q ss_conf             83788789978--24404642577867
Q gi|254780361|r   25 PAYVEDKKSGE--LRRPHHVDMKTGLY   49 (61)
Q Consensus        25 p~l~~c~~cG~--~~~~H~vc~~cG~Y   49 (61)
                      .+-+.|--||.  +++....|.+|||=
T Consensus        13 ktH~~CrrCG~~syH~qK~~CasCGyp   39 (52)
T 3jyw_Y           13 KSHTLCNRCGRRSFHVQKKTCSSCGYP   39 (52)
T ss_dssp             CCEECCSSSCCCCEETTTCCCSSSCSS
T ss_pred             CCCCHHCCCCCHHCEECCCCCCCCCCC
T ss_conf             550620074832203144602326898


No 31 
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIRON center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=49.37  E-value=9.8  Score=18.21  Aligned_cols=28  Identities=4%  Similarity=-0.190  Sum_probs=18.1

Q ss_pred             CCCEEECCCCCCEEEE--EEEECCCCCCCC
Q ss_conf             8837887899782440--464257786768
Q gi|254780361|r   24 PPAYVEDKKSGELRRP--HHVDMKTGLYRG   51 (61)
Q Consensus        24 ~p~l~~c~~cG~~~~~--H~vc~~cG~YkG   51 (61)
                      ...+-.|++||-...-  =-+||.||.=++
T Consensus       168 ~~~~~~C~~CG~i~~g~~p~~CP~C~~~~~  197 (202)
T 1yuz_A          168 DDKFHLCPICGYIHKGEDFEKCPICFRPKD  197 (202)
T ss_dssp             SCCEEECSSSCCEEESSCCSBCTTTCCBGG
T ss_pred             CCEEEECCCCCCEECCCCCCCCCCCCCCHH
T ss_conf             880678899998524998998999998744


No 32 
>1s1i_Y L35, YP55, 60S ribosomal protein L37-A; 80S ribosome, 60S ribosomal subunit, EEF2, tRNA translocation, sordarin, cryo-EM; 11.70A {Saccharomyces cerevisiae} SCOP: i.1.1.1
Probab=48.23  E-value=5.7  Score=19.46  Aligned_cols=24  Identities=8%  Similarity=0.087  Sum_probs=20.3

Q ss_pred             CCEEECCCCCC--EEEEEEEECCCCC
Q ss_conf             83788789978--2440464257786
Q gi|254780361|r   25 PAYVEDKKSGE--LRRPHHVDMKTGL   48 (61)
Q Consensus        25 p~l~~c~~cG~--~~~~H~vc~~cG~   48 (61)
                      .+-+.|--||.  +++....|.+|||
T Consensus        13 KtHtlCrRCG~~syH~qK~~CasCGy   38 (87)
T 1s1i_Y           13 KSHTLCNRCGRRSFHVQKKTCSSCGY   38 (87)
T ss_dssp             CCSEECTTSSSSEECSSSSSCSSSCT
T ss_pred             CCCCHHHCCCCCCCEECCCCCCCCCC
T ss_conf             67484206584011305344653689


No 33 
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=45.01  E-value=8.5  Score=18.54  Aligned_cols=22  Identities=5%  Similarity=-0.025  Sum_probs=11.7

Q ss_pred             EEECCCCCCEEEE---------EEEECCCCC
Q ss_conf             7887899782440---------464257786
Q gi|254780361|r   27 YVEDKKSGELRRP---------HHVDMKTGL   48 (61)
Q Consensus        27 l~~c~~cG~~~~~---------H~vc~~cG~   48 (61)
                      +-.||.||..-.+         -.+|..|||
T Consensus         4 m~FCp~C~nlL~~~~~~~~~~l~~~C~~C~y   34 (122)
T 1twf_I            4 FRFCRDCNNMLYPREDKENNRLLFECRTCSY   34 (122)
T ss_dssp             CCBCSSSCCBCEEEEETTTTEEEEECSSSSC
T ss_pred             CCCCCCCCCCCCCCCCCCCCEEEEECCCCCC
T ss_conf             6877443737772557888775898899988


No 34 
>1odh_A MGCM1; transcription factor/DNA, transcription factor, DNA-binding domain, protein/DNA complex; 2.85A {Mus musculus} SCOP: d.239.1.1
Probab=43.11  E-value=9.7  Score=18.23  Aligned_cols=22  Identities=5%  Similarity=-0.298  Sum_probs=16.5

Q ss_pred             EECCCCCCEEEEEEEEC-CCCCCC
Q ss_conf             88789978244046425-778676
Q gi|254780361|r   28 VEDKKSGELRRPHHVDM-KTGLYR   50 (61)
Q Consensus        28 ~~c~~cG~~~~~H~vc~-~cG~Yk   50 (61)
                      -.||||+ -.|.|+-|- .||||-
T Consensus       111 k~CpnC~-g~L~~~~Crgh~gypv  133 (174)
T 1odh_A          111 KSCPNCN-GPLKLIPCRGHGGFPV  133 (174)
T ss_dssp             SBCSSSC-CBEEEECCCTBTTBCC
T ss_pred             CCCCCCC-CCEEEEECCCCCCCCE
T ss_conf             8898999-8157776257678723


No 35 
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=39.32  E-value=11  Score=17.85  Aligned_cols=22  Identities=14%  Similarity=0.016  Sum_probs=14.8

Q ss_pred             EECCCCCC--EEEEE---EEECCCCCC
Q ss_conf             88789978--24404---642577867
Q gi|254780361|r   28 VEDKKSGE--LRRPH---HVDMKTGLY   49 (61)
Q Consensus        28 ~~c~~cG~--~~~~H---~vc~~cG~Y   49 (61)
                      -.||+||.  +.--|   ..|..|||-
T Consensus        19 k~CP~CG~GvFmA~H~dR~~CGKCgyT   45 (55)
T 2k4x_A           19 RFCPRCGPGVFLAEHADRYSCGRCGYT   45 (55)
T ss_dssp             CCCTTTTTTCCCEECSSEEECTTTCCC
T ss_pred             CCCCCCCCCEEEEECCCCCCCCCCCCE
T ss_conf             759899994772005897563675544


No 36 
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=37.58  E-value=11  Score=17.94  Aligned_cols=28  Identities=21%  Similarity=0.062  Sum_probs=17.9

Q ss_pred             ECCCCCCEEEEE--------------------EEECCCCC--CCCEEEEE
Q ss_conf             878997824404--------------------64257786--76879643
Q gi|254780361|r   29 EDKKSGELRRPH--------------------HVDMKTGL--YRGRQVFV   56 (61)
Q Consensus        29 ~c~~cG~~~~~H--------------------~vc~~cG~--YkGr~Vi~   56 (61)
                      .||.|..+..+.                    .=|+.|..  |+||.++.
T Consensus       306 LCp~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~GC~~C~~~G~~GR~~v~  355 (418)
T 1p9r_A          306 LCPDCKEPYEADKEQRKLFDSKKKEPLILYRATGCPKCNHKGYRGRTGIH  355 (418)
T ss_dssp             ECTTTCEEEECCHHHHTTC-----CCCEEEECCCCSSSCSSSEEEEEEEE
T ss_pred             CCCCCCCCCCCCHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCEEEE
T ss_conf             38987656789999996425345576389848986424899888704999


No 37 
>3bvo_A CO-chaperone protein HSCB, mitochondrial precursor; structural genomics medical relevance, protein structure initiative, PSI-2; 3.00A {Homo sapiens}
Probab=37.06  E-value=8.3  Score=18.60  Aligned_cols=24  Identities=8%  Similarity=-0.071  Sum_probs=17.8

Q ss_pred             CCEEECCCCCCEEE----EEEEECCCCC
Q ss_conf             83788789978244----0464257786
Q gi|254780361|r   25 PAYVEDKKSGELRR----PHHVDMKTGL   48 (61)
Q Consensus        25 p~l~~c~~cG~~~~----~H~vc~~cG~   48 (61)
                      .+-..|.+||....    ....|++||.
T Consensus         8 ~~~~~cw~c~~~~~~~~~~~~~C~~c~~   35 (207)
T 3bvo_A            8 SNYPRCWNCGGPWGPGREDRFFCPQCRA   35 (207)
T ss_dssp             ---CBCSSSCCBCCSSCSCCCBCTTTCC
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             9999899998986656765752565566


No 38 
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase- inhibitor complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=33.78  E-value=16  Score=17.11  Aligned_cols=21  Identities=10%  Similarity=-0.258  Sum_probs=12.7

Q ss_pred             EECCCCCCEE---------EEEEEECCCCC
Q ss_conf             8878997824---------40464257786
Q gi|254780361|r   28 VEDKKSGELR---------RPHHVDMKTGL   48 (61)
Q Consensus        28 ~~c~~cG~~~---------~~H~vc~~cG~   48 (61)
                      -.|++||++.         ..+..|+.||.
T Consensus        35 r~c~~Cg~~~~~~~~~~~~~~~~~c~~cg~   64 (681)
T 2pzi_A           35 RFCWNCGRPVGRSDSETKGASEGWCPYCGS   64 (681)
T ss_dssp             CBCTTTCCBCSCC-----CCSEEECTTTCC
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             665224895777778888766776888999


No 39 
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=29.72  E-value=16  Score=17.07  Aligned_cols=24  Identities=8%  Similarity=-0.272  Sum_probs=15.2

Q ss_pred             EECCCCCCEEEE-----------EEEECCCC---CCCC
Q ss_conf             887899782440-----------46425778---6768
Q gi|254780361|r   28 VEDKKSGELRRP-----------HHVDMKTG---LYRG   51 (61)
Q Consensus        28 ~~c~~cG~~~~~-----------H~vc~~cG---~YkG   51 (61)
                      ..|.-|+-...|           =..||+||   ||-+
T Consensus       199 ~~C~gC~~~l~~~~~~~~~~~~~i~~C~~CgRiL~~~~  236 (256)
T 3na7_A          199 QACGGCFIRLNDKIYTEVLTSGDMITCPYCGRILYAEG  236 (256)
T ss_dssp             TBCTTTCCBCCHHHHHHHHHSSSCEECTTTCCEEECSC
T ss_pred             CCCCCCCCCCCHHHHHHHHCCCCEEECCCCCCEEEECC
T ss_conf             91688782438999999885999048989997785066


No 40 
>1lv3_A Hypothetical protein YACG; zinc finger, rubredoxin knuckle, C4 tetrahedral Zn+2, antiparallel beta strand and alpha helix, NESG project; NMR {Escherichia coli} SCOP: g.39.1.9
Probab=28.72  E-value=26  Score=15.99  Aligned_cols=17  Identities=12%  Similarity=0.088  Sum_probs=13.1

Q ss_pred             CCCCCEEECCCCCCEEE
Q ss_conf             26883788789978244
Q gi|254780361|r   22 LTPPAYVEDKKSGELRR   38 (61)
Q Consensus        22 l~~p~l~~c~~cG~~~~   38 (61)
                      .+.+..+.||+||....
T Consensus         4 M~~~~~v~CP~C~k~v~   20 (68)
T 1lv3_A            4 MSETITVNCPTCGKTVV   20 (68)
T ss_dssp             CCCCCEEECTTTCCEEE
T ss_pred             CCCCCCCCCCCCCCCCC
T ss_conf             78885214889998444


No 41 
>3lpe_B DNA-directed RNA polymerase subunit E''; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii}
Probab=28.20  E-value=18  Score=16.87  Aligned_cols=26  Identities=12%  Similarity=-0.047  Sum_probs=11.5

Q ss_pred             ECCCCCCEEEEEEEECCCC-----CCCCEEEE
Q ss_conf             8789978244046425778-----67687964
Q gi|254780361|r   29 EDKKSGELRRPHHVDMKTG-----LYRGRQVF   55 (61)
Q Consensus        29 ~c~~cG~~~~~H~vc~~cG-----~YkGr~Vi   55 (61)
                      .|.+|+.. .+--.||+||     .|.|--+|
T Consensus         3 AC~~C~~i-~~~~~Cp~C~s~~t~~w~G~v~i   33 (59)
T 3lpe_B            3 ACLKCKYL-TNDEICPICHSPTSENWIGLLIV   33 (59)
T ss_dssp             EETTTCBE-ESSSBCTTTCCBEESCEECEEEE
T ss_pred             CCCCCCCC-CCCCCCCCCCCCCCCCEEEEEEE
T ss_conf             72319577-17898969489887774008999


No 42 
>3noy_A 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; iron-sulfur protein, non-mevalonate pathway, terpene biosynt isoprenoid biosynthesis; 2.70A {Aquifex aeolicus}
Probab=27.11  E-value=23  Score=16.23  Aligned_cols=16  Identities=13%  Similarity=0.054  Sum_probs=12.2

Q ss_pred             CCCCCCEEECCCCCCE
Q ss_conf             0268837887899782
Q gi|254780361|r   21 ALTPPAYVEDKKSGEL   36 (61)
Q Consensus        21 ~l~~p~l~~c~~cG~~   36 (61)
                      +...+.++.||.||-.
T Consensus       265 R~~~~~~ISCP~CGRt  280 (366)
T 3noy_A          265 RRRGVEIVACPTCGRI  280 (366)
T ss_dssp             CCSSCEEEECCCCTTC
T ss_pred             CCCCCCCCCCCCCCCC
T ss_conf             6479971317997765


No 43 
>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*
Probab=25.77  E-value=7.5  Score=18.83  Aligned_cols=23  Identities=13%  Similarity=0.092  Sum_probs=16.2

Q ss_pred             EEECCCCCCEEEE--------EEEECCCCCC
Q ss_conf             7887899782440--------4642577867
Q gi|254780361|r   27 YVEDKKSGELRRP--------HHVDMKTGLY   49 (61)
Q Consensus        27 l~~c~~cG~~~~~--------H~vc~~cG~Y   49 (61)
                      ...|.+||...-|        +.+|-.||.|
T Consensus         9 ~~~C~nCgtt~Tp~WRr~~~G~~lCNACGl~   39 (66)
T 4gat_A            9 PTTCTNCFTQTTPLWRRNPEGQPLCNACGLF   39 (66)
T ss_dssp             SCCCTTTCCCCCSSCEEETTTEEECHHHHHH
T ss_pred             CCCCCCCCCCCCCHHCCCCCCCCCHHHHHHH
T ss_conf             8977898897882200189998520465789


No 44 
>1nui_A DNA primase/helicase; zinc-biding domain, toprim fold, DNA replication, DNA- directed RNA polymerase, primosome, late protein; HET: DNA; 2.90A {Enterobacteria phage T7} SCOP: e.13.1.2 g.41.3.2
Probab=24.56  E-value=22  Score=16.42  Aligned_cols=22  Identities=9%  Similarity=0.013  Sum_probs=12.2

Q ss_pred             ECCCCCCEEE------EEEEECCCCCCC
Q ss_conf             8789978244------046425778676
Q gi|254780361|r   29 EDKKSGELRR------PHHVDMKTGLYR   50 (61)
Q Consensus        29 ~c~~cG~~~~------~H~vc~~cG~Yk   50 (61)
                      .||.||.-..      -+--|-+||.|.
T Consensus        16 pCP~Cg~~d~~~~~~dg~~~C~~Cg~~~   43 (255)
T 1nui_A           16 PCDNCGSSDGNSLFSDGHTFCYVCEKWT   43 (255)
T ss_dssp             CCSSSCCSSCEEEETTSCEEETTTCCEE
T ss_pred             CCCCCCCCCCCEEEECCCEEECCCCCCC
T ss_conf             9998989999879529988976799844


No 45 
>1v54_F VI, cytochrome C oxidase polypeptide VB; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: g.41.5.3 PDB: 1oco_F* 1occ_F* 1ocz_F* 1ocr_F* 1v55_F* 2dyr_F* 2dys_F* 2eij_F* 2eik_F* 2eil_F* 2eim_F* 2ein_F* 2occ_F* 2zxw_F* 3abk_F* 3abl_F* 3abm_F* 3ag1_F* 3ag2_F* 3ag3_F* ...
Probab=23.86  E-value=19  Score=16.72  Aligned_cols=10  Identities=10%  Similarity=-0.024  Sum_probs=5.8

Q ss_pred             EEEEECCCCCC
Q ss_conf             04642577867
Q gi|254780361|r   39 PHHVDMKTGLY   49 (61)
Q Consensus        39 ~H~vc~~cG~Y   49 (61)
                      |+| |+.||.|
T Consensus        79 p~R-C~eCG~~   88 (98)
T 1v54_F           79 AQR-CPSCGTH   88 (98)
T ss_dssp             CEE-CTTTCCE
T ss_pred             CCC-CCCCCCE
T ss_conf             634-5877858


No 46 
>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*
Probab=23.48  E-value=7.8  Score=18.72  Aligned_cols=21  Identities=14%  Similarity=0.150  Sum_probs=12.6

Q ss_pred             ECCCCCCEEEE--------EEEECCCCCC
Q ss_conf             87899782440--------4642577867
Q gi|254780361|r   29 EDKKSGELRRP--------HHVDMKTGLY   49 (61)
Q Consensus        29 ~c~~cG~~~~~--------H~vc~~cG~Y   49 (61)
                      .|.|||...-|        +.+|..||.|
T Consensus         3 ~C~nCgtt~Tp~WRr~~~g~~lCNACGl~   31 (43)
T 2vut_I            3 TCTNCFTQTTPLWRRNPEGQPLCNACGLF   31 (43)
T ss_dssp             CCSSSCCCCCSCCEECTTSCEECHHHHHH
T ss_pred             CCCCCCCCCCCCCCCCCCCCEEEHHHHHH
T ss_conf             47888896896540399998721576789


No 47 
>3ir9_A Peptide chain release factor subunit 1; structural genomics, APC36528.1, C-terminal domain, PSI-2, protein structure initiative; 2.21A {Methanosarcina mazei}
Probab=22.31  E-value=24  Score=16.19  Aligned_cols=23  Identities=13%  Similarity=-0.145  Sum_probs=15.3

Q ss_pred             EEECCCCCCE------------EEEEEEECCCCCC
Q ss_conf             7887899782------------4404642577867
Q gi|254780361|r   27 YVEDKKSGEL------------RRPHHVDMKTGLY   49 (61)
Q Consensus        27 l~~c~~cG~~------------~~~H~vc~~cG~Y   49 (61)
                      -..|++|+..            ......||.||-.
T Consensus        78 ~~~c~~~~~~~~~~~~~~~~~~~~~~~~c~~cg~~  112 (166)
T 3ir9_A           78 TTKCSVCGYENKWTRRWKPGEPAPAAGNCPKCGSS  112 (166)
T ss_dssp             EEEESSSSCEEEEEECCCC--CCCCCCBCTTTCCB
T ss_pred             EEECCCCCCEEEEEEECCCCCCCCCCCCCCCCCCC
T ss_conf             99758987447787613542233334568544630


No 48 
>2nn6_I 3'-5' exoribonuclease CSL4 homolog; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2
Probab=21.64  E-value=28  Score=15.80  Aligned_cols=30  Identities=13%  Similarity=-0.087  Sum_probs=21.9

Q ss_pred             EECCCCCCEEE---EEEEECCCCCCCCEEEEEE
Q ss_conf             88789978244---0464257786768796434
Q gi|254780361|r   28 VEDKKSGELRR---PHHVDMKTGLYRGRQVFVL   57 (61)
Q Consensus        28 ~~c~~cG~~~~---~H~vc~~cG~YkGr~Vi~~   57 (61)
                      ..|+.|+.+..   ..-.|+.||+.--|+|-.+
T Consensus       170 A~c~~c~~~l~~~~~~m~C~~cg~~E~RKvak~  202 (209)
T 2nn6_I          170 AHSESGIQMVPISWCEMQCPKTHTKEFRKVARV  202 (209)
T ss_dssp             CBCSSSCBCEEEETTEEECTTTTCCBCCCC---
T ss_pred             EECCCCCCCEEECCCEEECCCCCCEECCCCCCC
T ss_conf             988899851776699889999999685100477


No 49 
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=21.33  E-value=42  Score=14.87  Aligned_cols=23  Identities=17%  Similarity=0.128  Sum_probs=13.6

Q ss_pred             CEEECCCCCCEEEE---EEEECCCCC
Q ss_conf             37887899782440---464257786
Q gi|254780361|r   26 AYVEDKKSGELRRP---HHVDMKTGL   48 (61)
Q Consensus        26 ~l~~c~~cG~~~~~---H~vc~~cG~   48 (61)
                      ..+.||-||..-.+   ..+|+.|+.
T Consensus       286 ~~v~Cp~CgA~y~~~~kG~lC~vC~v  311 (325)
T 3mv2_A          286 PSVSDPLTGSKYVITEKDKIDRIAMI  311 (325)
T ss_dssp             CEEECTTTCCEEEGGGTTSBCSSSSC
T ss_pred             CCCCCCCCCCEECHHHCCCCCCCCCC
T ss_conf             97141797886256348996887775


No 50 
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=20.83  E-value=17  Score=16.97  Aligned_cols=22  Identities=23%  Similarity=0.138  Sum_probs=13.4

Q ss_pred             CEEECCCCCC----EEEEEEEECCCCC
Q ss_conf             3788789978----2440464257786
Q gi|254780361|r   26 AYVEDKKSGE----LRRPHHVDMKTGL   48 (61)
Q Consensus        26 ~l~~c~~cG~----~~~~H~vc~~cG~   48 (61)
                      ....|..|+.    ..+.|| |..||.
T Consensus       374 ~~~~C~~C~~~F~~~~Rrhh-Cr~CG~  399 (434)
T 3mpx_A          374 HVMMCMNCGCDFSLTLRRHH-CHACGK  399 (434)
T ss_dssp             ---------------------------
T ss_pred             CCCCCCCCCCCCCCCCCCCC-CCCCCC
T ss_conf             78718899995577243605-788988


No 51 
>2a6h_D DNA-directed RNA polymerase beta' chain; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus} SCOP: e.29.1.2 PDB: 1smy_D* 1zyr_D* 1iw7_D* 2a69_D* 2a6e_D 2a68_D* 2be5_D* 2cw0_D 2o5i_D 2o5j_D* 2ppb_D* 3dxj_D* 3eql_D* 1ynj_D* 1l9z_D 1l9u_D* 1ynn_D* 2auj_D
Probab=20.80  E-value=17  Score=16.91  Aligned_cols=19  Identities=26%  Similarity=0.429  Sum_probs=12.0

Q ss_pred             ECCCCCCEEEEEE---EECCCCC
Q ss_conf             8789978244046---4257786
Q gi|254780361|r   29 EDKKSGELRRPHH---VDMKTGL   48 (61)
Q Consensus        29 ~c~~cG~~~~~H~---vc~~cG~   48 (61)
                      +| .||.++..-.   +|..||-
T Consensus        57 eC-~CGkyk~~~~~g~~C~~CgV   78 (1524)
T 2a6h_D           57 EC-ACGKYKRQRFEGKVCERCGV   78 (1524)
T ss_dssp             CC-SSCSSCSSTTTTCCCSSSCC
T ss_pred             EE-ECCCCCCCCCCCEECCCCCC
T ss_conf             67-38776552649827799987


No 52 
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=20.46  E-value=36  Score=15.25  Aligned_cols=23  Identities=17%  Similarity=0.079  Sum_probs=17.0

Q ss_pred             CEEECCCCCCEEEE---EEEECCCCC
Q ss_conf             37887899782440---464257786
Q gi|254780361|r   26 AYVEDKKSGELRRP---HHVDMKTGL   48 (61)
Q Consensus        26 ~l~~c~~cG~~~~~---H~vc~~cG~   48 (61)
                      ..+.||=||..-.+   ..+|+.|+.
T Consensus       277 ~~v~Cp~cgA~y~~~~kG~lC~vC~l  302 (320)
T 3mkr_B          277 PVEKCPLSGACYSPEFKGQICKVTTV  302 (320)
T ss_dssp             CCEECTTTCCEECGGGTTSBCTTTSS
T ss_pred             CCCCCCCCCCEECHHHCCCCCCCCCC
T ss_conf             97045897886257448998887876


No 53 
>2l0z_A Glycoprotein G2; zinc-binding domain, virus envelope glycoprotein, GPC, junin arenavirus, viral protein; NMR {Junin virus}
Probab=20.02  E-value=19  Score=16.72  Aligned_cols=14  Identities=29%  Similarity=0.413  Sum_probs=9.2

Q ss_pred             EEEE-----EECCCCCCCCE
Q ss_conf             4046-----42577867687
Q gi|254780361|r   38 RPHH-----VDMKTGLYRGR   52 (61)
Q Consensus        38 ~~H~-----vc~~cG~YkGr   52 (61)
                      +|||     +| +||+|+..
T Consensus        14 kPHRL~~~g~C-sCG~y~~~   32 (42)
T 2l0z_A           14 LPHRLNSLGGC-RCGKYPNL   32 (42)
T ss_dssp             TTSCCCTTSSB-TTTTBCCC
T ss_pred             CCEEECCCCEE-CCCCCCCC
T ss_conf             97060678507-25422688


Done!