Query gi|254780361|ref|YP_003064774.1| ribosomal protein L32 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 61 No_of_seqs 118 out of 665 Neff 4.8 Searched_HMMs 23785 Date Mon May 30 09:46:18 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780361.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 2j01_5 50S ribosomal protein L 99.9 6.5E-29 2.7E-33 171.0 1.6 57 1-57 4-60 (60) 2 2zjr_Z 50S ribosomal protein L 99.9 1.2E-28 5.1E-33 169.6 2.4 57 1-57 4-60 (60) 3 3ofq_0 50S ribosomal protein L 99.9 7.5E-26 3.1E-30 155.0 1.4 55 2-57 1-56 (56) 4 3bbo_2 Ribosomal protein L32; 97.3 4.4E-05 1.8E-09 46.2 0.9 24 1-24 1-24 (57) 5 2f9i_B Acetyl-coenzyme A carbo 93.6 0.026 1.1E-06 31.7 2.1 31 19-49 20-58 (285) 6 2f9y_B Acetyl-coenzyme A carbo 91.1 0.054 2.3E-06 30.0 1.1 23 27-49 24-52 (304) 7 2apo_B Ribosome biogenesis pro 90.6 0.077 3.3E-06 29.2 1.6 22 26-48 5-26 (60) 8 2aus_D NOP10, ribosome biogene 88.7 0.13 5.4E-06 28.1 1.5 22 26-48 4-25 (60) 9 3cng_A Nudix hydrolase; struct 84.0 0.41 1.7E-05 25.5 2.0 22 27-48 3-33 (189) 10 2gnr_A Conserved hypothetical 81.6 0.72 3E-05 24.2 2.5 23 26-48 46-69 (145) 11 1dl6_A Transcription factor II 80.3 0.29 1.2E-05 26.2 0.1 38 20-57 4-47 (58) 12 2akl_A PHNA-like protein PA012 80.3 0.47 2E-05 25.1 1.2 29 20-48 20-52 (138) 13 3k1f_M Transcription initiatio 75.8 0.74 3.1E-05 24.1 1.1 31 27-57 21-59 (197) 14 3k7a_M Transcription initiatio 73.9 0.6 2.5E-05 24.5 0.3 31 26-56 20-58 (345) 15 1nnq_A Rubrerythrin; structura 71.8 2.4 0.0001 21.4 2.9 29 24-52 136-166 (171) 16 1vk6_A NADH pyrophosphatase; 1 71.0 1.7 7.1E-05 22.2 2.0 22 27-48 107-133 (269) 17 2kdx_A HYPA, hydrogenase/ureas 70.5 3.3 0.00014 20.7 3.4 28 23-50 69-100 (119) 18 1lko_A Rubrerythrin all-iron(I 69.6 1.6 6.6E-05 22.4 1.6 27 26-52 154-183 (191) 19 3m7n_A Putative uncharacterize 67.2 1.4 5.8E-05 22.7 0.9 29 27-55 140-171 (179) 20 1h7b_A Anaerobic ribonucleotid 65.8 1.4 5.9E-05 22.6 0.7 26 23-48 536-566 (605) 21 3a43_A HYPD, hydrogenase nicke 64.8 3.6 0.00015 20.5 2.6 28 23-50 66-117 (139) 22 2k2d_A Ring finger and CHY zin 61.6 2.5 0.0001 21.3 1.3 31 26-56 36-71 (79) 23 1vq8_1 50S ribosomal protein L 60.7 4.2 0.00018 20.1 2.4 25 24-48 14-40 (57) 24 3ga8_A HTH-type transcriptiona 59.7 3.5 0.00015 20.6 1.8 30 28-57 3-32 (78) 25 1pft_A TFIIB, PFTFIIBN; N-term 58.1 3.9 0.00017 20.3 1.9 30 28-57 6-41 (50) 26 2gvi_A Conserved hypothetical 57.8 2.4 0.0001 21.4 0.7 15 27-41 172-186 (204) 27 2zkr_2 60S ribosomal protein L 55.6 4.2 0.00018 20.2 1.6 24 25-48 14-39 (97) 28 2ct7_A Ring finger protein 31; 52.5 6 0.00025 19.3 2.1 26 23-48 21-51 (86) 29 3dfx_A Trans-acting T-cell-spe 51.3 1.2 4.8E-05 23.1 -1.8 24 26-49 6-37 (63) 30 3jyw_Y 60S ribosomal protein L 50.6 6.1 0.00026 19.3 1.9 25 25-49 13-39 (52) 31 1yuz_A Nigerythrin; rubrythrin 49.4 9.8 0.00041 18.2 2.7 28 24-51 168-197 (202) 32 1s1i_Y L35, YP55, 60S ribosoma 48.2 5.7 0.00024 19.5 1.4 24 25-48 13-38 (87) 33 1twf_I B12.6, DNA-directed RNA 45.0 8.5 0.00036 18.5 1.9 22 27-48 4-34 (122) 34 1odh_A MGCM1; transcription fa 43.1 9.7 0.00041 18.2 1.9 22 28-50 111-133 (174) 35 2k4x_A 30S ribosomal protein S 39.3 11 0.00048 17.9 1.8 22 28-49 19-45 (55) 36 1p9r_A General secretion pathw 37.6 11 0.00046 17.9 1.5 28 29-56 306-355 (418) 37 3bvo_A CO-chaperone protein HS 37.1 8.3 0.00035 18.6 0.8 24 25-48 8-35 (207) 38 2pzi_A Probable serine/threoni 33.8 16 0.00067 17.1 1.8 21 28-48 35-64 (681) 39 3na7_A HP0958; flagellar bioge 29.7 16 0.00068 17.1 1.3 24 28-51 199-236 (256) 40 1lv3_A Hypothetical protein YA 28.7 26 0.0011 16.0 2.2 17 22-38 4-20 (68) 41 3lpe_B DNA-directed RNA polyme 28.2 18 0.00074 16.9 1.3 26 29-55 3-33 (59) 42 3noy_A 4-hydroxy-3-methylbut-2 27.1 23 0.00098 16.2 1.7 16 21-36 265-280 (366) 43 4gat_A Nitrogen regulatory pro 25.8 7.5 0.00031 18.8 -1.0 23 27-49 9-39 (66) 44 1nui_A DNA primase/helicase; z 24.6 22 0.00091 16.4 1.2 22 29-50 16-43 (255) 45 1v54_F VI, cytochrome C oxidas 23.9 19 0.00079 16.7 0.7 10 39-49 79-88 (98) 46 2vut_I AREA, nitrogen regulato 23.5 7.8 0.00033 18.7 -1.3 21 29-49 3-31 (43) 47 3ir9_A Peptide chain release f 22.3 24 0.001 16.2 1.0 23 27-49 78-112 (166) 48 2nn6_I 3'-5' exoribonuclease C 21.6 28 0.0012 15.8 1.3 30 28-57 170-202 (209) 49 3mv2_A Coatomer subunit alpha; 21.3 42 0.0018 14.9 2.1 23 26-48 286-311 (325) 50 3mpx_A FYVE, rhogef and PH dom 20.8 17 0.00071 17.0 0.0 22 26-48 374-399 (434) 51 2a6h_D DNA-directed RNA polyme 20.8 17 0.00073 16.9 0.1 19 29-48 57-78 (1524) 52 3mkr_B Coatomer subunit alpha; 20.5 36 0.0015 15.3 1.6 23 26-48 277-302 (320) 53 2l0z_A Glycoprotein G2; zinc-b 20.0 19 0.00079 16.7 0.1 14 38-52 14-32 (42) No 1 >2j01_5 50S ribosomal protein L32; ribosome, tRNA, paromomycin, mRNA, translation; 2.8A {Thermus thermophilus} SCOP: g.41.8.5 PDB: 2hgq_4 2hgj_4 2hgu_4 2j03_5 2jl6_5 2jl8_5 2v47_5 2v49_5 2wdi_5 2wdj_5 2wdl_5 2wdn_5 2wh2_5 2wh4_5 2wrj_5 2wrl_5 2wro_5 2wrr_5 2x9s_5 2x9u_5 ... Probab=99.94 E-value=6.5e-29 Score=171.03 Aligned_cols=57 Identities=42% Similarity=0.670 Sum_probs=56.0 Q ss_pred CCCCCCCCCHHCCCCHHHHHCCCCCCEEECCCCCCEEEEEEEECCCCCCCCEEEEEE Q ss_conf 978878876100174122310268837887899782440464257786768796434 Q gi|254780361|r 1 MAVPKRKTSPSKRGMRRSADALTPPAYVEDKKSGELRRPHHVDMKTGLYRGRQVFVL 57 (61) Q Consensus 1 MAVPKrK~S~sr~~~RRsh~~l~~p~l~~c~~cG~~~~~H~vc~~cG~YkGr~Vi~~ 57 (61) |||||+|+|+||+++|||||+|++|+|+.||+||++++||+||++||||+|||||++ T Consensus 4 ~~VPKrk~Sksr~~~RRsh~~l~~p~l~~C~~CG~~~~pHrvC~~CG~YkGr~Vi~v 60 (60) T 2j01_5 4 HPVPKKKTSKARRDARRSHHALTPPTLVPCPECKAMKPPHTVCPECGYYAGRKVLEV 60 (60) T ss_dssp SSCCSSCCCHHHHHHHHGGGCCCCCCCBCCSSSSSCBCTTCBCTTTCCSSSCCSCCC T ss_pred CCCCCCCCCCCCCHHHHCCCCCCCCCEEECCCCCCEECCCEECCCCCCCCCEEEEEC T ss_conf 788878667201222201311258834689999970267368798981999985769 No 2 >2zjr_Z 50S ribosomal protein L32; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.5 PDB: 1j5a_M* 1jzy_M* 1jzz_M* 1k01_M* 1nkw_Z 1ond_Z* 1sm1_Z* 1yl3_5 2b66_5 2b9n_5 2b9p_5 2zjp_Y* 2zjq_Z 1jzx_M 3cf5_Y* 3dll_Y* 1nwy_Z* 1nwx_Z* 1xbp_Z* 1pnu_Z ... Probab=99.94 E-value=1.2e-28 Score=169.63 Aligned_cols=57 Identities=46% Similarity=0.635 Sum_probs=56.0 Q ss_pred CCCCCCCCCHHCCCCHHHHHCCCCCCEEECCCCCCEEEEEEEECCCCCCCCEEEEEE Q ss_conf 978878876100174122310268837887899782440464257786768796434 Q gi|254780361|r 1 MAVPKRKTSPSKRGMRRSADALTPPAYVEDKKSGELRRPHHVDMKTGLYRGRQVFVL 57 (61) Q Consensus 1 MAVPKrK~S~sr~~~RRsh~~l~~p~l~~c~~cG~~~~~H~vc~~cG~YkGr~Vi~~ 57 (61) |||||+|+|+||+++|||||+|++|+|+.||+||++++||+||++||||+|||||++ T Consensus 4 ~~VPKrk~Sksrr~~RRsh~~l~~~~l~~C~~cG~~~~~H~vc~~CG~YkGr~Vi~v 60 (60) T 2zjr_Z 4 HPVPKKKTSKSKRDMRRSHHALTAPNLTECPQCHGKKLSHHICPNCGYYDGRQVLAV 60 (60) T ss_dssp CSCCSSCCCTTHHHHHTTTCCCCCCCCEECTTTCCEECTTBCCTTTCBSSSBCSCC- T ss_pred CCCCCCCCCCCCCHHHHCCCCCCCCCEEECCCCCCCCCCCEECCCCCCCCCEEEEEC T ss_conf 787878667201310101210248861688999986367267798980999986769 No 3 >3ofq_0 50S ribosomal protein L32; protein biosynthesis, ribosomes, RNA, tRNA, transfer, antibi EXIT, peptidyl, ribosomal subunit, large; 3.10A {Escherichia coli} PDB: 1p85_Z 1p86_Z 2awb_0 2aw4_0 2i2v_0 2j28_0 2i2t_0* 2qao_0* 2qba_0* 2qbc_0* 2qbe_0 2qbg_0 2qbi_0* 2qbk_0* 2qov_0 2qox_0 2qoz_0* 2qp1_0* 2rdo_0 2vhm_0 ... Probab=99.91 E-value=7.5e-26 Score=155.01 Aligned_cols=55 Identities=51% Similarity=0.726 Sum_probs=52.2 Q ss_pred CCCCCCCCHHCCCCHHHHHCCCC-CCEEECCCCCCEEEEEEEECCCCCCCCEEEEEE Q ss_conf 78878876100174122310268-837887899782440464257786768796434 Q gi|254780361|r 2 AVPKRKTSPSKRGMRRSADALTP-PAYVEDKKSGELRRPHHVDMKTGLYRGRQVFVL 57 (61) Q Consensus 2 AVPKrK~S~sr~~~RRsh~~l~~-p~l~~c~~cG~~~~~H~vc~~cG~YkGr~Vi~~ 57 (61) ||||+|+|+||+++|||||+|.. |+|+.||+||++++||+||+ ||||+|||||+. T Consensus 1 AVPKrK~S~sR~~~RRah~~~~~~~~l~~C~~CG~~~~pH~vC~-cG~Y~Gr~Vi~k 56 (56) T 3ofq_0 1 AVQQNKPTRSKRGMRRSHDALTAVTSLSVDKTSGEKHLRHHITA-DGYYRGRKVIAK 56 (56) T ss_dssp CCCSSCCCSHHHHHHHGGGCCCCCCCCBCCSSSCCCBCSSSCCT-TSBCSSCBCCCC T ss_pred CCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCEECC-CCCCCCEEEECC T ss_conf 98766687200623121122105876226889998605857889-988989980409 No 4 >3bbo_2 Ribosomal protein L32; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} Probab=97.30 E-value=4.4e-05 Score=46.22 Aligned_cols=24 Identities=38% Similarity=0.448 Sum_probs=21.5 Q ss_pred CCCCCCCCCHHCCCCHHHHHCCCC Q ss_conf 978878876100174122310268 Q gi|254780361|r 1 MAVPKRKTSPSKRGMRRSADALTP 24 (61) Q Consensus 1 MAVPKrK~S~sr~~~RRsh~~l~~ 24 (61) |||||.|+|.|+++.|++.|+... T Consensus 1 MAVPKKrtS~skk~iRk~~Wk~k~ 24 (57) T 3bbo_2 1 MAVPKKRTSIYKKRIRKNIWKKKG 24 (57) T ss_dssp CCCCSSCCCTTHHHHTTSTTCCCT T ss_pred CCCCCCCCCHHHHHHHHHHHHHHH T ss_conf 998955330788999999999999 No 5 >2f9i_B Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta; zinc ribbon, crotonase superfamily, spiral domain; 1.98A {Staphylococcus aureus} Probab=93.62 E-value=0.026 Score=31.69 Aligned_cols=31 Identities=13% Similarity=0.034 Sum_probs=22.2 Q ss_pred HHCCCCCC--EEECCCCCCEEE------EEEEECCCCCC Q ss_conf 31026883--788789978244------04642577867 Q gi|254780361|r 19 ADALTPPA--YVEDKKSGELRR------PHHVDMKTGLY 49 (61) Q Consensus 19 h~~l~~p~--l~~c~~cG~~~~------~H~vc~~cG~Y 49 (61) ..+...|. -++||+||+... -..|||+|||+ T Consensus 20 ~~k~~~p~~lW~kCp~C~~~i~~~dl~~n~~VCp~C~~H 58 (285) T 2f9i_B 20 SKNNDVPAGIMTKCPKCKKIMYTKELAENLNVCFNCDHH 58 (285) T ss_dssp ------CCSSEEECTTTCCEEEHHHHHHTTTBCTTTCCB T ss_pred CCCCCCCCCCEECCCCCCCHHHHHHHHHHCCCCCCCCCC T ss_conf 344789998630288887313299999848889099799 No 6 >2f9y_B Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta; zinc ribbon, crotonase superfamily, spiral domain, ligase; 3.20A {Escherichia coli} SCOP: c.14.1.4 Probab=91.10 E-value=0.054 Score=30.02 Aligned_cols=23 Identities=13% Similarity=0.046 Sum_probs=18.9 Q ss_pred EEECCCCCCEEE------EEEEECCCCCC Q ss_conf 788789978244------04642577867 Q gi|254780361|r 27 YVEDKKSGELRR------PHHVDMKTGLY 49 (61) Q Consensus 27 l~~c~~cG~~~~------~H~vc~~cG~Y 49 (61) -++||+||+... -..|||+|||. T Consensus 24 W~kC~~C~~~~~~~~l~~n~~vCp~C~~H 52 (304) T 2f9y_B 24 WTKCDSCGQVLYRAELERNLEVCPKCDHH 52 (304) T ss_dssp EECCTTTCCCEETTHHHHTTTBCTTTCCB T ss_pred CCCCCCCCCEEEHHHHHHHCCCCCCCCCC T ss_conf 21387877631599999848899499898 No 7 >2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A Probab=90.64 E-value=0.077 Score=29.22 Aligned_cols=22 Identities=18% Similarity=0.072 Sum_probs=18.8 Q ss_pred CEEECCCCCCEEEEEEEECCCCC Q ss_conf 37887899782440464257786 Q gi|254780361|r 26 AYVEDKKSGELRRPHHVDMKTGL 48 (61) Q Consensus 26 ~l~~c~~cG~~~~~H~vc~~cG~ 48 (61) -|..|+.||.+.| -.+||.||- T Consensus 5 kirkC~~C~~YTL-~~~Cp~CG~ 26 (60) T 2apo_B 5 RMKKCPKCGLYTL-KEICPKCGE 26 (60) T ss_dssp CCEECTTTCCEES-SSBCSSSCS T ss_pred HHHHCCCCCCEEC-CCCCCCCCC T ss_conf 6651874666535-453767878 No 8 >2aus_D NOP10, ribosome biogenesis protein NOP10; isomerase, structural protein, isomerase/structural protein complex; 2.10A {Pyrococcus abyssi} PDB: 3lwr_B 3lwo_B* 3lwq_B* 3lwp_B 3lwv_B 3hax_C* 2hvy_C* 3hay_C* 2ey4_E 3hjw_B* 2rfk_B* 3hjy_B Probab=88.74 E-value=0.13 Score=28.07 Aligned_cols=22 Identities=14% Similarity=-0.013 Sum_probs=18.6 Q ss_pred CEEECCCCCCEEEEEEEECCCCC Q ss_conf 37887899782440464257786 Q gi|254780361|r 26 AYVEDKKSGELRRPHHVDMKTGL 48 (61) Q Consensus 26 ~l~~c~~cG~~~~~H~vc~~cG~ 48 (61) .|..|+.||.+.| -.+||.||- T Consensus 4 ~irkC~~C~~YTL-k~~CP~CG~ 25 (60) T 2aus_D 4 RIRKCPKCGRYTL-KETCPVCGE 25 (60) T ss_dssp CCEECTTTCCEES-SSBCTTTCS T ss_pred HHHCCCCCCCEEC-CCCCCCCCC T ss_conf 4114874666635-563767878 No 9 >3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protein structure initiative, midwest center for structural genomics; 2.00A {Nitrosomonas europaea atcc 19718} Probab=84.03 E-value=0.41 Score=25.45 Aligned_cols=22 Identities=14% Similarity=-0.076 Sum_probs=16.6 Q ss_pred EEECCCCCCEEE---------EEEEECCCCC Q ss_conf 788789978244---------0464257786 Q gi|254780361|r 27 YVEDKKSGELRR---------PHHVDMKTGL 48 (61) Q Consensus 27 l~~c~~cG~~~~---------~H~vc~~cG~ 48 (61) +-.||+||.... +..+|++||+ T Consensus 3 ~~yCp~CG~~~~~~~~~g~~~~~~~C~~C~~ 33 (189) T 3cng_A 3 MKFCSQCGGEVILRIPEGDTLPRYICPKCHT 33 (189) T ss_dssp CCBCTTTCCBCEEECCTTCSSCEEEETTTTE T ss_pred CEECCCCCCCCEECCCCCCCCEEEECCCCCC T ss_conf 6058467875640346889724753799997 No 10 >2gnr_A Conserved hypothetical protein; 13815350, structural genomics, PSI, protein structure initiative; 1.80A {Sulfolobus solfataricus P2} SCOP: b.40.4.15 PDB: 3irb_A Probab=81.59 E-value=0.72 Score=24.16 Aligned_cols=23 Identities=9% Similarity=-0.123 Sum_probs=19.0 Q ss_pred CEEECCCCCCEEE-EEEEECCCCC Q ss_conf 3788789978244-0464257786 Q gi|254780361|r 26 AYVEDKKSGELRR-PHHVDMKTGL 48 (61) Q Consensus 26 ~l~~c~~cG~~~~-~H~vc~~cG~ 48 (61) -+..|++||.... |..+|+.||- T Consensus 46 ~~~rC~~Cg~~~~Ppr~~Cp~C~s 69 (145) T 2gnr_A 46 IGSKCSKCGRIFVPARSYCEHCFV 69 (145) T ss_dssp EEEECTTTCCEEESCCSEETTTTE T ss_pred EEEECCCCCCEEECCCCCCCCCCC T ss_conf 999879999588396011779999 No 11 >1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A Probab=80.33 E-value=0.29 Score=26.22 Aligned_cols=38 Identities=16% Similarity=0.091 Sum_probs=26.9 Q ss_pred HCCCCCCEEECCCCCCEEE------EEEEECCCCCCCCEEEEEE Q ss_conf 1026883788789978244------0464257786768796434 Q gi|254780361|r 20 DALTPPAYVEDKKSGELRR------PHHVDMKTGLYRGRQVFVL 57 (61) Q Consensus 20 ~~l~~p~l~~c~~cG~~~~------~H~vc~~cG~YkGr~Vi~~ 57 (61) -++....-.+||+||...+ -..||..||+--.-.+|+. T Consensus 4 ~~~~~~~~~~Cp~Cgs~~iv~D~~~Ge~vC~~CG~Vlee~~ID~ 47 (58) T 1dl6_A 4 SRLDALPRVTCPNHPDAILVEDYRAGDMICPECGLVVGDRVIDV 47 (58) T ss_dssp CSCCCCSCCSBTTBSSSCCEECSSSCCEECTTTCCEECCSCCCC T ss_pred CCCCCCCCCCCCCCCCCCEEEECCCCEEECCCCCCEECCCCCCC T ss_conf 42325675589698798777888899187278998924331368 No 12 >2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5 Probab=80.31 E-value=0.47 Score=25.09 Aligned_cols=29 Identities=3% Similarity=-0.192 Sum_probs=21.1 Q ss_pred HCCCCCCEEECCCCCCEEE----EEEEECCCCC Q ss_conf 1026883788789978244----0464257786 Q gi|254780361|r 20 DALTPPAYVEDKKSGELRR----PHHVDMKTGL 48 (61) Q Consensus 20 ~~l~~p~l~~c~~cG~~~~----~H~vc~~cG~ 48 (61) ......+|-.||+|+..-. ...+||.||+ T Consensus 20 ~~~~mstlP~CP~C~seytY~dg~~~vCPeC~h 52 (138) T 2akl_A 20 QGHMVSTLPPCPQCNSEYTYEDGALLVCPECAH 52 (138) T ss_dssp ---CCCCSCCCTTTCCCCCEECSSSEEETTTTE T ss_pred CCCCCCCCCCCCCCCCCCEECCCCEEECCCCCC T ss_conf 378567898898889902373799888987637 No 13 >3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, transcription factor, DNA-binding, DNA-directed RNA polymerase; 4.30A {Saccharomyces cerevisiae} Probab=75.80 E-value=0.74 Score=24.09 Aligned_cols=31 Identities=10% Similarity=-0.014 Sum_probs=22.1 Q ss_pred EEECCCCCCE--E------EEEEEECCCCCCCCEEEEEE Q ss_conf 7887899782--4------40464257786768796434 Q gi|254780361|r 27 YVEDKKSGEL--R------RPHHVDMKTGLYRGRQVFVL 57 (61) Q Consensus 27 l~~c~~cG~~--~------~~H~vc~~cG~YkGr~Vi~~ 57 (61) ...||.||.. . .--.||..||+--+-.+|+. T Consensus 21 tl~CPeCGS~~t~IVeD~s~GEiVCsdCGLVIEErIIDe 59 (197) T 3k1f_M 21 VLTCPECKVYPPKIVERFSEGDVVCALCGLVLSDKLVDT 59 (197) T ss_dssp CCCCTTTCCSSCCEEEEGGGTEEEETTTCBBCCCCCBCH T ss_pred EEECCCCCCCCCEEEEECCCCCEECCCCCEEECCCCCCC T ss_conf 468999999899898979989689714892924533579 No 14 >3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae} Probab=73.90 E-value=0.6 Score=24.55 Aligned_cols=31 Identities=10% Similarity=-0.008 Sum_probs=19.9 Q ss_pred CEEECCCCCCE--E------EEEEEECCCCCCCCEEEEE Q ss_conf 37887899782--4------4046425778676879643 Q gi|254780361|r 26 AYVEDKKSGEL--R------RPHHVDMKTGLYRGRQVFV 56 (61) Q Consensus 26 ~l~~c~~cG~~--~------~~H~vc~~cG~YkGr~Vi~ 56 (61) ....||+||+. . .-..||..||+--.-.+|+ T Consensus 20 ~~~~C~~C~~~~~~iv~D~~~G~~vC~~CG~Vl~e~~id 58 (345) T 3k7a_M 20 IVLTCPECKVYPPKIVERFSEGDVVCALCGLVLSDKLVD 58 (345) T ss_dssp CCCCCSTTCCSCCCCCCCSSSCSCCCSSSCCCCCCCCCC T ss_pred CCEECCCCCCCCCCEEEECCCCCEECCCCCCCCCCCCCC T ss_conf 031895999999864678788988314688780464455 No 15 >1nnq_A Rubrerythrin; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics, secsg; 2.35A {Pyrococcus furiosus} SCOP: a.25.1.1 g.41.5.1 PDB: 2hr5_A Probab=71.78 E-value=2.4 Score=21.40 Aligned_cols=29 Identities=7% Similarity=-0.189 Sum_probs=19.8 Q ss_pred CCCEEECCCCCCEEE--EEEEECCCCCCCCE Q ss_conf 883788789978244--04642577867687 Q gi|254780361|r 24 PPAYVEDKKSGELRR--PHHVDMKTGLYRGR 52 (61) Q Consensus 24 ~p~l~~c~~cG~~~~--~H~vc~~cG~YkGr 52 (61) .+.+-+|++||-... +=-+||.||.=++. T Consensus 136 ~~~~~vC~~CG~i~~g~~P~~CPvC~~p~~~ 166 (171) T 1nnq_A 136 IKKVYICPICGYTAVDEAPEYCPVCGAPKEK 166 (171) T ss_dssp CSCEEECTTTCCEEESCCCSBCTTTCCBGGG T ss_pred CCCEEECCCCCCCCCCCCCCCCCCCCCCHHH T ss_conf 7873589989393899999979799996767 No 16 >1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; HET: MSE; 2.20A {Escherichia coli K12} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A Probab=71.04 E-value=1.7 Score=22.20 Aligned_cols=22 Identities=9% Similarity=-0.188 Sum_probs=16.3 Q ss_pred EEECCCCCCEEEEE-----EEECCCCC Q ss_conf 78878997824404-----64257786 Q gi|254780361|r 27 YVEDKKSGELRRPH-----HVDMKTGL 48 (61) Q Consensus 27 l~~c~~cG~~~~~H-----~vc~~cG~ 48 (61) ...||.||....+. +.|++||+ T Consensus 107 ~rfC~~CG~~~~~~~~~~~~~C~~C~~ 133 (269) T 1vk6_A 107 HKYCGYCGHEMYPSKTEWAMLCSHCRE 133 (269) T ss_dssp TSBCTTTCCBEEECSSSSCEEESSSSC T ss_pred CCCCCCCCCCCCCCCCCEEEECCCCCC T ss_conf 986866798774367980488989988 No 17 >2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori} Probab=70.49 E-value=3.3 Score=20.72 Aligned_cols=28 Identities=18% Similarity=0.071 Sum_probs=20.3 Q ss_pred CCCCEEECCCCCCEEEE---EE-EECCCCCCC Q ss_conf 68837887899782440---46-425778676 Q gi|254780361|r 23 TPPAYVEDKKSGELRRP---HH-VDMKTGLYR 50 (61) Q Consensus 23 ~~p~l~~c~~cG~~~~~---H~-vc~~cG~Yk 50 (61) ..|....|++||..--+ +. .||.||-+. T Consensus 69 ~~p~~~~C~~Cg~~~~~~~~~~~~CP~Cgs~~ 100 (119) T 2kdx_A 69 DEKVELECKDCSHVFKPNALDYGVCEKCHSKN 100 (119) T ss_dssp EECCEEECSSSSCEECSCCSTTCCCSSSSSCC T ss_pred ECCCEEECCCCCCEECCCCCCCCCCCCCCCCC T ss_conf 62867898789988334775477290978999 No 18 >1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubredoxin-like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A Probab=69.64 E-value=1.6 Score=22.37 Aligned_cols=27 Identities=4% Similarity=-0.027 Sum_probs=19.5 Q ss_pred CEEECCCCCCEEE---EEEEECCCCCCCCE Q ss_conf 3788789978244---04642577867687 Q gi|254780361|r 26 AYVEDKKSGELRR---PHHVDMKTGLYRGR 52 (61) Q Consensus 26 ~l~~c~~cG~~~~---~H~vc~~cG~YkGr 52 (61) ..-.|++||-... |=-+||.||.=++. T Consensus 154 ~~~~C~~CG~i~~g~~~p~~CP~C~~~~~~ 183 (191) T 1lko_A 154 TKWRCRNCGYVHEGTGAPELCPACAHPKAH 183 (191) T ss_dssp EEEEETTTCCEEEEEECCSBCTTTCCBGGG T ss_pred CEEECCCCCCCCCCCCCCCCCCCCCCCHHH T ss_conf 457899998601289998859799996598 No 19 >3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A Probab=67.24 E-value=1.4 Score=22.67 Aligned_cols=29 Identities=7% Similarity=-0.156 Sum_probs=21.9 Q ss_pred EEECCCCCCEEEEEE---EECCCCCCCCEEEE Q ss_conf 788789978244046---42577867687964 Q gi|254780361|r 27 YVEDKKSGELRRPHH---VDMKTGLYRGRQVF 55 (61) Q Consensus 27 l~~c~~cG~~~~~H~---vc~~cG~YkGr~Vi 55 (61) +..|+.||.+..+-. .||+||+.--|+|- T Consensus 140 ~a~c~~c~~~l~~~~~~~~C~~cg~~e~RKva 171 (179) T 3m7n_A 140 RALCSNCKTEMVREGDILKCPECGRVEKRKIS 171 (179) T ss_dssp ECBCTTTCCBCEECSSSEECSSSCCEECCCBC T ss_pred EEECCCCCCEEEEECCEEECCCCCCEEEEEEC T ss_conf 99678778607770999999999987832250 No 20 >1h7b_A Anaerobic ribonucleotide-triphosphate reductase large chain; oxidoreductase, allosteric regulation, substrate specificity; 2.45A {Bacteriophage T4} SCOP: c.7.1.3 PDB: 1h79_A* 1h7a_A* 1h78_A 1hk8_A* Probab=65.79 E-value=1.4 Score=22.61 Aligned_cols=26 Identities=12% Similarity=-0.086 Sum_probs=17.0 Q ss_pred CCCCEEECCCCCCEEEE----E-EEECCCCC Q ss_conf 68837887899782440----4-64257786 Q gi|254780361|r 23 TPPAYVEDKKSGELRRP----H-HVDMKTGL 48 (61) Q Consensus 23 ~~p~l~~c~~cG~~~~~----H-~vc~~cG~ 48 (61) ..+.+..|.+||-..-. | ..||.||- T Consensus 536 ~n~~~~~C~~Cg~~~~~~~~e~~~~CP~CG~ 566 (605) T 1h7b_A 536 VNMPVDKCFTCGSTHEMTPTENGFVCSICGE 566 (605) T ss_dssp EECCEEET----------------------- T ss_pred ECCCCCCCCCCCCCCCCCCCCCCCCCCCCCC T ss_conf 2868975777898786045777983908969 No 21 >3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A* Probab=64.80 E-value=3.6 Score=20.51 Aligned_cols=28 Identities=11% Similarity=-0.075 Sum_probs=20.4 Q ss_pred CCCCEEECCCCCCEEEEE------------------------EEECCCCCCC Q ss_conf 688378878997824404------------------------6425778676 Q gi|254780361|r 23 TPPAYVEDKKSGELRRPH------------------------HVDMKTGLYR 50 (61) Q Consensus 23 ~~p~l~~c~~cG~~~~~H------------------------~vc~~cG~Yk 50 (61) ..|....|.+||.---+- -.||.||-+. T Consensus 66 ~~p~~~~C~~Cg~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~CP~Cgs~~ 117 (139) T 3a43_A 66 EEEAVFKCRNCNYEWKLKEVKDKFDERIKEDIHFIPEVVHAFLACPKCGSHD 117 (139) T ss_dssp EECCEEEETTTCCEEEGGGCTTCCSCCCGGGCCCCGGGCGGGCSCSSSSCCC T ss_pred EECCEEECCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC T ss_conf 7087389867898411142000112111222233432346554791976988 No 22 >2k2d_A Ring finger and CHY zinc finger domain- containing protein 1; zinc-binding protein, cytoplasm, metal-binding, nucleus, metal binding protein; NMR {Homo sapiens} Probab=61.58 E-value=2.5 Score=21.34 Aligned_cols=31 Identities=6% Similarity=-0.262 Sum_probs=23.3 Q ss_pred CEEECCCCCCE-----EEEEEEECCCCCCCCEEEEE Q ss_conf 37887899782-----44046425778676879643 Q gi|254780361|r 26 AYVEDKKSGEL-----RRPHHVDMKTGLYRGRQVFV 56 (61) Q Consensus 26 ~l~~c~~cG~~-----~~~H~vc~~cG~YkGr~Vi~ 56 (61) ..+.|-.|++. +.--+-|+.||-|+-+|+-. T Consensus 36 v~IlCNDC~~ks~v~fH~lg~KC~~C~SYNT~q~~~ 71 (79) T 2k2d_A 36 VDILCNDCNGRSTVQFHILGMKCKICESYNTAQAGG 71 (79) T ss_dssp EEEEESSSCCEEEEECCTTCCCCTTTSCCCEEESCC T ss_pred EEEECCCCCCCCCEEEEEEEECCCCCCCCCCCCCCC T ss_conf 799837888864500586311068899916332357 No 23 >1vq8_1 50S ribosomal protein L37E; ribosome 50S, protein-protein complex, RNA-RNA complex, protein-RNA complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.2 PDB: 1vq4_1* 1vq5_1* 1vq6_1* 1vq7_1* 1s72_1* 1vq9_1* 1vqk_1* 1vql_1* 1vqm_1* 1vqn_1* 1vqo_1* 1vqp_1* 1yhq_1* 1yi2_1* 1yij_1* 1yit_1* 1yj9_1* 1yjn_1* 1yjw_1* 2otj_1* ... Probab=60.74 E-value=4.2 Score=20.14 Aligned_cols=25 Identities=16% Similarity=0.272 Sum_probs=21.4 Q ss_pred CCCEEECCCCCC--EEEEEEEECCCCC Q ss_conf 883788789978--2440464257786 Q gi|254780361|r 24 PPAYVEDKKSGE--LRRPHHVDMKTGL 48 (61) Q Consensus 24 ~p~l~~c~~cG~--~~~~H~vc~~cG~ 48 (61) ..+-+.|.-||. +++....|.+||| T Consensus 14 ~ktH~~CrRCG~~syH~qK~~CasCGy 40 (57) T 1vq8_1 14 TTTHTKCRRCGEKSYHTKKKVCSSCGF 40 (57) T ss_dssp CCCEEECTTTCSEEEETTTTEETTTCT T ss_pred CCCCCHHCCCCCHHHHHCCCCCCCCCC T ss_conf 875062027582244332362331588 No 24 >3ga8_A HTH-type transcriptional regulator MQSA (YGIT/B3021); helix-turn-helix, Zn-binding protein, DNA-binding, transcription regulation; HET: PE4; 1.70A {Escherichia coli k-12} PDB: 3hi2_A Probab=59.71 E-value=3.5 Score=20.56 Aligned_cols=30 Identities=10% Similarity=0.050 Sum_probs=23.0 Q ss_pred EECCCCCCEEEEEEEECCCCCCCCEEEEEE Q ss_conf 887899782440464257786768796434 Q gi|254780361|r 28 VEDKKSGELRRPHHVDMKTGLYRGRQVFVL 57 (61) Q Consensus 28 ~~c~~cG~~~~~H~vc~~cG~YkGr~Vi~~ 57 (61) ..||.||+-.|-|.+=+.-=.|+|...+.. T Consensus 3 MkCPiCg~g~L~~~~r~~~~tYkG~s~~i~ 32 (78) T 3ga8_A 3 MKCPVCHQGEMVSGIKDIPYTFRGRKTVLK 32 (78) T ss_dssp CBCTTTSSSBEEEEEEEEEEEETTEEEEEE T ss_pred CCCCCCCCCEEECCEEEEEEEECCEEEEEC T ss_conf 608858983336331555899898999976 No 25 >1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1 Probab=58.06 E-value=3.9 Score=20.28 Aligned_cols=30 Identities=10% Similarity=-0.065 Sum_probs=20.0 Q ss_pred EECCCCCCEEEE------EEEECCCCCCCCEEEEEE Q ss_conf 887899782440------464257786768796434 Q gi|254780361|r 28 VEDKKSGELRRP------HHVDMKTGLYRGRQVFVL 57 (61) Q Consensus 28 ~~c~~cG~~~~~------H~vc~~cG~YkGr~Vi~~ 57 (61) ..||+||...+- -.||.+||+--.-.+|+. T Consensus 6 ~~Cp~Cgs~~iv~D~~~Ge~vC~~CG~V~~e~~ID~ 41 (50) T 1pft_A 6 KVCPACESAELIYDPERGEIVCAKCGYVIEENIIDM 41 (50) T ss_dssp CSCTTTSCCCEEEETTTTEEEESSSCCBCCCCCCCC T ss_pred CCCCCCCCCCEEEECCCCEEECCCCCCEECCCCCCC T ss_conf 538598898378868889286278985933242458 No 26 >2gvi_A Conserved hypothetical protein; 10640422, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 1.87A {Thermoplasma acidophilum} SCOP: d.81.3.1 g.39.1.18 Probab=57.79 E-value=2.4 Score=21.40 Aligned_cols=15 Identities=20% Similarity=0.107 Sum_probs=12.4 Q ss_pred EEECCCCCCEEEEEE Q ss_conf 788789978244046 Q gi|254780361|r 27 YVEDKKSGELRRPHH 41 (61) Q Consensus 27 l~~c~~cG~~~~~H~ 41 (61) .+.|..|||+.+-.+ T Consensus 172 ~v~C~~CGE~v~e~r 186 (204) T 2gvi_A 172 KVRCDVCGEYTYEAD 186 (204) T ss_dssp EEECTTTCCEEEGGG T ss_pred CEECCCCCCCCCCCC T ss_conf 519998997223240 No 27 >2zkr_2 60S ribosomal protein L37E; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} SCOP: i.1.1.1 Probab=55.63 E-value=4.2 Score=20.15 Aligned_cols=24 Identities=13% Similarity=0.076 Sum_probs=20.9 Q ss_pred CCEEECCCCCC--EEEEEEEECCCCC Q ss_conf 83788789978--2440464257786 Q gi|254780361|r 25 PAYVEDKKSGE--LRRPHHVDMKTGL 48 (61) Q Consensus 25 p~l~~c~~cG~--~~~~H~vc~~cG~ 48 (61) .+-+.|--||. +++....|.+||| T Consensus 14 KtH~lCrRCG~~syH~qK~~CasCGy 39 (97) T 2zkr_2 14 KTHTLCRRCGSKAYHLQKSTCGKCGY 39 (97) T ss_dssp CCEECCTTTCSSCEETTSCCBTTTCT T ss_pred CCCCHHCCCCCHHHHCCCCCCCCCCC T ss_conf 76451027696244303030100389 No 28 >2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4 Probab=52.52 E-value=6 Score=19.31 Aligned_cols=26 Identities=4% Similarity=-0.164 Sum_probs=19.4 Q ss_pred CCCCEEECCCCCCEE-----EEEEEECCCCC Q ss_conf 688378878997824-----40464257786 Q gi|254780361|r 23 TPPAYVEDKKSGELR-----RPHHVDMKTGL 48 (61) Q Consensus 23 ~~p~l~~c~~cG~~~-----~~H~vc~~cG~ 48 (61) ..|++.-||+|+... -++-+|+.||+ T Consensus 21 ~~~~~~~CP~C~~~~~~~~~~~~~~C~~C~~ 51 (86) T 2ct7_A 21 RDPKFLWCAQCSFGFIYEREQLEATCPQCHQ 51 (86) T ss_dssp SCCCEECCSSSCCCEECCCSCSCEECTTTCC T ss_pred HCCCCCCCCCCCCEEEECCCCCEEEECCCCC T ss_conf 5889749989994488679999888499999 No 29 >3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* Probab=51.32 E-value=1.2 Score=23.07 Aligned_cols=24 Identities=21% Similarity=0.113 Sum_probs=17.9 Q ss_pred CEEECCCCCCEEEE--------EEEECCCCCC Q ss_conf 37887899782440--------4642577867 Q gi|254780361|r 26 AYVEDKKSGELRRP--------HHVDMKTGLY 49 (61) Q Consensus 26 ~l~~c~~cG~~~~~--------H~vc~~cG~Y 49 (61) ....|.|||...-| +-+|-.||.| T Consensus 6 ~g~~C~NC~t~~TpLWRR~~~G~~lCNACGLy 37 (63) T 3dfx_A 6 AGTSCANCQTTTTTLWRRNANGDPVCNACGLY 37 (63) T ss_dssp TTCCCTTTCCSCCSSCCCCTTSCCCCHHHHHH T ss_pred CCCCCCCCCCCCCCEEEECCCCCEEEEHHHHH T ss_conf 88745688986542065889989821145778 No 30 >3jyw_Y 60S ribosomal protein L37(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} Probab=50.64 E-value=6.1 Score=19.27 Aligned_cols=25 Identities=8% Similarity=0.042 Sum_probs=20.7 Q ss_pred CCEEECCCCCC--EEEEEEEECCCCCC Q ss_conf 83788789978--24404642577867 Q gi|254780361|r 25 PAYVEDKKSGE--LRRPHHVDMKTGLY 49 (61) Q Consensus 25 p~l~~c~~cG~--~~~~H~vc~~cG~Y 49 (61) .+-+.|--||. +++....|.+|||= T Consensus 13 ktH~~CrrCG~~syH~qK~~CasCGyp 39 (52) T 3jyw_Y 13 KSHTLCNRCGRRSFHVQKKTCSSCGYP 39 (52) T ss_dssp CCEECCSSSCCCCEETTTCCCSSSCSS T ss_pred CCCCHHCCCCCHHCEECCCCCCCCCCC T ss_conf 550620074832203144602326898 No 31 >1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIRON center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A Probab=49.37 E-value=9.8 Score=18.21 Aligned_cols=28 Identities=4% Similarity=-0.190 Sum_probs=18.1 Q ss_pred CCCEEECCCCCCEEEE--EEEECCCCCCCC Q ss_conf 8837887899782440--464257786768 Q gi|254780361|r 24 PPAYVEDKKSGELRRP--HHVDMKTGLYRG 51 (61) Q Consensus 24 ~p~l~~c~~cG~~~~~--H~vc~~cG~YkG 51 (61) ...+-.|++||-...- =-+||.||.=++ T Consensus 168 ~~~~~~C~~CG~i~~g~~p~~CP~C~~~~~ 197 (202) T 1yuz_A 168 DDKFHLCPICGYIHKGEDFEKCPICFRPKD 197 (202) T ss_dssp SCCEEECSSSCCEEESSCCSBCTTTCCBGG T ss_pred CCEEEECCCCCCEECCCCCCCCCCCCCCHH T ss_conf 880678899998524998998999998744 No 32 >1s1i_Y L35, YP55, 60S ribosomal protein L37-A; 80S ribosome, 60S ribosomal subunit, EEF2, tRNA translocation, sordarin, cryo-EM; 11.70A {Saccharomyces cerevisiae} SCOP: i.1.1.1 Probab=48.23 E-value=5.7 Score=19.46 Aligned_cols=24 Identities=8% Similarity=0.087 Sum_probs=20.3 Q ss_pred CCEEECCCCCC--EEEEEEEECCCCC Q ss_conf 83788789978--2440464257786 Q gi|254780361|r 25 PAYVEDKKSGE--LRRPHHVDMKTGL 48 (61) Q Consensus 25 p~l~~c~~cG~--~~~~H~vc~~cG~ 48 (61) .+-+.|--||. +++....|.+||| T Consensus 13 KtHtlCrRCG~~syH~qK~~CasCGy 38 (87) T 1s1i_Y 13 KSHTLCNRCGRRSFHVQKKTCSSCGY 38 (87) T ss_dssp CCSEECTTSSSSEECSSSSSCSSSCT T ss_pred CCCCHHHCCCCCCCEECCCCCCCCCC T ss_conf 67484206584011305344653689 No 33 >1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ... Probab=45.01 E-value=8.5 Score=18.54 Aligned_cols=22 Identities=5% Similarity=-0.025 Sum_probs=11.7 Q ss_pred EEECCCCCCEEEE---------EEEECCCCC Q ss_conf 7887899782440---------464257786 Q gi|254780361|r 27 YVEDKKSGELRRP---------HHVDMKTGL 48 (61) Q Consensus 27 l~~c~~cG~~~~~---------H~vc~~cG~ 48 (61) +-.||.||..-.+ -.+|..||| T Consensus 4 m~FCp~C~nlL~~~~~~~~~~l~~~C~~C~y 34 (122) T 1twf_I 4 FRFCRDCNNMLYPREDKENNRLLFECRTCSY 34 (122) T ss_dssp CCBCSSSCCBCEEEEETTTTEEEEECSSSSC T ss_pred CCCCCCCCCCCCCCCCCCCCEEEEECCCCCC T ss_conf 6877443737772557888775898899988 No 34 >1odh_A MGCM1; transcription factor/DNA, transcription factor, DNA-binding domain, protein/DNA complex; 2.85A {Mus musculus} SCOP: d.239.1.1 Probab=43.11 E-value=9.7 Score=18.23 Aligned_cols=22 Identities=5% Similarity=-0.298 Sum_probs=16.5 Q ss_pred EECCCCCCEEEEEEEEC-CCCCCC Q ss_conf 88789978244046425-778676 Q gi|254780361|r 28 VEDKKSGELRRPHHVDM-KTGLYR 50 (61) Q Consensus 28 ~~c~~cG~~~~~H~vc~-~cG~Yk 50 (61) -.||||+ -.|.|+-|- .||||- T Consensus 111 k~CpnC~-g~L~~~~Crgh~gypv 133 (174) T 1odh_A 111 KSCPNCN-GPLKLIPCRGHGGFPV 133 (174) T ss_dssp SBCSSSC-CBEEEECCCTBTTBCC T ss_pred CCCCCCC-CCEEEEECCCCCCCCE T ss_conf 8898999-8157776257678723 No 35 >2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8 Probab=39.32 E-value=11 Score=17.85 Aligned_cols=22 Identities=14% Similarity=0.016 Sum_probs=14.8 Q ss_pred EECCCCCC--EEEEE---EEECCCCCC Q ss_conf 88789978--24404---642577867 Q gi|254780361|r 28 VEDKKSGE--LRRPH---HVDMKTGLY 49 (61) Q Consensus 28 ~~c~~cG~--~~~~H---~vc~~cG~Y 49 (61) -.||+||. +.--| ..|..|||- T Consensus 19 k~CP~CG~GvFmA~H~dR~~CGKCgyT 45 (55) T 2k4x_A 19 RFCPRCGPGVFLAEHADRYSCGRCGYT 45 (55) T ss_dssp CCCTTTTTTCCCEECSSEEECTTTCCC T ss_pred CCCCCCCCCEEEEECCCCCCCCCCCCE T ss_conf 759899994772005897563675544 No 36 >1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A* Probab=37.58 E-value=11 Score=17.94 Aligned_cols=28 Identities=21% Similarity=0.062 Sum_probs=17.9 Q ss_pred ECCCCCCEEEEE--------------------EEECCCCC--CCCEEEEE Q ss_conf 878997824404--------------------64257786--76879643 Q gi|254780361|r 29 EDKKSGELRRPH--------------------HVDMKTGL--YRGRQVFV 56 (61) Q Consensus 29 ~c~~cG~~~~~H--------------------~vc~~cG~--YkGr~Vi~ 56 (61) .||.|..+..+. .=|+.|.. |+||.++. T Consensus 306 LCp~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~GC~~C~~~G~~GR~~v~ 355 (418) T 1p9r_A 306 LCPDCKEPYEADKEQRKLFDSKKKEPLILYRATGCPKCNHKGYRGRTGIH 355 (418) T ss_dssp ECTTTCEEEECCHHHHTTC-----CCCEEEECCCCSSSCSSSEEEEEEEE T ss_pred CCCCCCCCCCCCHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCEEEE T ss_conf 38987656789999996425345576389848986424899888704999 No 37 >3bvo_A CO-chaperone protein HSCB, mitochondrial precursor; structural genomics medical relevance, protein structure initiative, PSI-2; 3.00A {Homo sapiens} Probab=37.06 E-value=8.3 Score=18.60 Aligned_cols=24 Identities=8% Similarity=-0.071 Sum_probs=17.8 Q ss_pred CCEEECCCCCCEEE----EEEEECCCCC Q ss_conf 83788789978244----0464257786 Q gi|254780361|r 25 PAYVEDKKSGELRR----PHHVDMKTGL 48 (61) Q Consensus 25 p~l~~c~~cG~~~~----~H~vc~~cG~ 48 (61) .+-..|.+||.... ....|++||. T Consensus 8 ~~~~~cw~c~~~~~~~~~~~~~C~~c~~ 35 (207) T 3bvo_A 8 SNYPRCWNCGGPWGPGREDRFFCPQCRA 35 (207) T ss_dssp ---CBCSSSCCBCCSSCSCCCBCTTTCC T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCC T ss_conf 9999899998986656765752565566 No 38 >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase- inhibitor complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} Probab=33.78 E-value=16 Score=17.11 Aligned_cols=21 Identities=10% Similarity=-0.258 Sum_probs=12.7 Q ss_pred EECCCCCCEE---------EEEEEECCCCC Q ss_conf 8878997824---------40464257786 Q gi|254780361|r 28 VEDKKSGELR---------RPHHVDMKTGL 48 (61) Q Consensus 28 ~~c~~cG~~~---------~~H~vc~~cG~ 48 (61) -.|++||++. ..+..|+.||. T Consensus 35 r~c~~Cg~~~~~~~~~~~~~~~~~c~~cg~ 64 (681) T 2pzi_A 35 RFCWNCGRPVGRSDSETKGASEGWCPYCGS 64 (681) T ss_dssp CBCTTTCCBCSCC-----CCSEEECTTTCC T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCC T ss_conf 665224895777778888766776888999 No 39 >3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori} Probab=29.72 E-value=16 Score=17.07 Aligned_cols=24 Identities=8% Similarity=-0.272 Sum_probs=15.2 Q ss_pred EECCCCCCEEEE-----------EEEECCCC---CCCC Q ss_conf 887899782440-----------46425778---6768 Q gi|254780361|r 28 VEDKKSGELRRP-----------HHVDMKTG---LYRG 51 (61) Q Consensus 28 ~~c~~cG~~~~~-----------H~vc~~cG---~YkG 51 (61) ..|.-|+-...| =..||+|| ||-+ T Consensus 199 ~~C~gC~~~l~~~~~~~~~~~~~i~~C~~CgRiL~~~~ 236 (256) T 3na7_A 199 QACGGCFIRLNDKIYTEVLTSGDMITCPYCGRILYAEG 236 (256) T ss_dssp TBCTTTCCBCCHHHHHHHHHSSSCEECTTTCCEEECSC T ss_pred CCCCCCCCCCCHHHHHHHHCCCCEEECCCCCCEEEECC T ss_conf 91688782438999999885999048989997785066 No 40 >1lv3_A Hypothetical protein YACG; zinc finger, rubredoxin knuckle, C4 tetrahedral Zn+2, antiparallel beta strand and alpha helix, NESG project; NMR {Escherichia coli} SCOP: g.39.1.9 Probab=28.72 E-value=26 Score=15.99 Aligned_cols=17 Identities=12% Similarity=0.088 Sum_probs=13.1 Q ss_pred CCCCCEEECCCCCCEEE Q ss_conf 26883788789978244 Q gi|254780361|r 22 LTPPAYVEDKKSGELRR 38 (61) Q Consensus 22 l~~p~l~~c~~cG~~~~ 38 (61) .+.+..+.||+||.... T Consensus 4 M~~~~~v~CP~C~k~v~ 20 (68) T 1lv3_A 4 MSETITVNCPTCGKTVV 20 (68) T ss_dssp CCCCCEEECTTTCCEEE T ss_pred CCCCCCCCCCCCCCCCC T ss_conf 78885214889998444 No 41 >3lpe_B DNA-directed RNA polymerase subunit E''; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} Probab=28.20 E-value=18 Score=16.87 Aligned_cols=26 Identities=12% Similarity=-0.047 Sum_probs=11.5 Q ss_pred ECCCCCCEEEEEEEECCCC-----CCCCEEEE Q ss_conf 8789978244046425778-----67687964 Q gi|254780361|r 29 EDKKSGELRRPHHVDMKTG-----LYRGRQVF 55 (61) Q Consensus 29 ~c~~cG~~~~~H~vc~~cG-----~YkGr~Vi 55 (61) .|.+|+.. .+--.||+|| .|.|--+| T Consensus 3 AC~~C~~i-~~~~~Cp~C~s~~t~~w~G~v~i 33 (59) T 3lpe_B 3 ACLKCKYL-TNDEICPICHSPTSENWIGLLIV 33 (59) T ss_dssp EETTTCBE-ESSSBCTTTCCBEESCEECEEEE T ss_pred CCCCCCCC-CCCCCCCCCCCCCCCCEEEEEEE T ss_conf 72319577-17898969489887774008999 No 42 >3noy_A 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; iron-sulfur protein, non-mevalonate pathway, terpene biosynt isoprenoid biosynthesis; 2.70A {Aquifex aeolicus} Probab=27.11 E-value=23 Score=16.23 Aligned_cols=16 Identities=13% Similarity=0.054 Sum_probs=12.2 Q ss_pred CCCCCCEEECCCCCCE Q ss_conf 0268837887899782 Q gi|254780361|r 21 ALTPPAYVEDKKSGEL 36 (61) Q Consensus 21 ~l~~p~l~~c~~cG~~ 36 (61) +...+.++.||.||-. T Consensus 265 R~~~~~~ISCP~CGRt 280 (366) T 3noy_A 265 RRRGVEIVACPTCGRI 280 (366) T ss_dssp CCSSCEEEECCCCTTC T ss_pred CCCCCCCCCCCCCCCC T ss_conf 6479971317997765 No 43 >4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A* Probab=25.77 E-value=7.5 Score=18.83 Aligned_cols=23 Identities=13% Similarity=0.092 Sum_probs=16.2 Q ss_pred EEECCCCCCEEEE--------EEEECCCCCC Q ss_conf 7887899782440--------4642577867 Q gi|254780361|r 27 YVEDKKSGELRRP--------HHVDMKTGLY 49 (61) Q Consensus 27 l~~c~~cG~~~~~--------H~vc~~cG~Y 49 (61) ...|.+||...-| +.+|-.||.| T Consensus 9 ~~~C~nCgtt~Tp~WRr~~~G~~lCNACGl~ 39 (66) T 4gat_A 9 PTTCTNCFTQTTPLWRRNPEGQPLCNACGLF 39 (66) T ss_dssp SCCCTTTCCCCCSSCEEETTTEEECHHHHHH T ss_pred CCCCCCCCCCCCCHHCCCCCCCCCHHHHHHH T ss_conf 8977898897882200189998520465789 No 44 >1nui_A DNA primase/helicase; zinc-biding domain, toprim fold, DNA replication, DNA- directed RNA polymerase, primosome, late protein; HET: DNA; 2.90A {Enterobacteria phage T7} SCOP: e.13.1.2 g.41.3.2 Probab=24.56 E-value=22 Score=16.42 Aligned_cols=22 Identities=9% Similarity=0.013 Sum_probs=12.2 Q ss_pred ECCCCCCEEE------EEEEECCCCCCC Q ss_conf 8789978244------046425778676 Q gi|254780361|r 29 EDKKSGELRR------PHHVDMKTGLYR 50 (61) Q Consensus 29 ~c~~cG~~~~------~H~vc~~cG~Yk 50 (61) .||.||.-.. -+--|-+||.|. T Consensus 16 pCP~Cg~~d~~~~~~dg~~~C~~Cg~~~ 43 (255) T 1nui_A 16 PCDNCGSSDGNSLFSDGHTFCYVCEKWT 43 (255) T ss_dssp CCSSSCCSSCEEEETTSCEEETTTCCEE T ss_pred CCCCCCCCCCCEEEECCCEEECCCCCCC T ss_conf 9998989999879529988976799844 No 45 >1v54_F VI, cytochrome C oxidase polypeptide VB; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: g.41.5.3 PDB: 1oco_F* 1occ_F* 1ocz_F* 1ocr_F* 1v55_F* 2dyr_F* 2dys_F* 2eij_F* 2eik_F* 2eil_F* 2eim_F* 2ein_F* 2occ_F* 2zxw_F* 3abk_F* 3abl_F* 3abm_F* 3ag1_F* 3ag2_F* 3ag3_F* ... Probab=23.86 E-value=19 Score=16.72 Aligned_cols=10 Identities=10% Similarity=-0.024 Sum_probs=5.8 Q ss_pred EEEEECCCCCC Q ss_conf 04642577867 Q gi|254780361|r 39 PHHVDMKTGLY 49 (61) Q Consensus 39 ~H~vc~~cG~Y 49 (61) |+| |+.||.| T Consensus 79 p~R-C~eCG~~ 88 (98) T 1v54_F 79 AQR-CPSCGTH 88 (98) T ss_dssp CEE-CTTTCCE T ss_pred CCC-CCCCCCE T ss_conf 634-5877858 No 46 >2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I* Probab=23.48 E-value=7.8 Score=18.72 Aligned_cols=21 Identities=14% Similarity=0.150 Sum_probs=12.6 Q ss_pred ECCCCCCEEEE--------EEEECCCCCC Q ss_conf 87899782440--------4642577867 Q gi|254780361|r 29 EDKKSGELRRP--------HHVDMKTGLY 49 (61) Q Consensus 29 ~c~~cG~~~~~--------H~vc~~cG~Y 49 (61) .|.|||...-| +.+|..||.| T Consensus 3 ~C~nCgtt~Tp~WRr~~~g~~lCNACGl~ 31 (43) T 2vut_I 3 TCTNCFTQTTPLWRRNPEGQPLCNACGLF 31 (43) T ss_dssp CCSSSCCCCCSCCEECTTSCEECHHHHHH T ss_pred CCCCCCCCCCCCCCCCCCCCEEEHHHHHH T ss_conf 47888896896540399998721576789 No 47 >3ir9_A Peptide chain release factor subunit 1; structural genomics, APC36528.1, C-terminal domain, PSI-2, protein structure initiative; 2.21A {Methanosarcina mazei} Probab=22.31 E-value=24 Score=16.19 Aligned_cols=23 Identities=13% Similarity=-0.145 Sum_probs=15.3 Q ss_pred EEECCCCCCE------------EEEEEEECCCCCC Q ss_conf 7887899782------------4404642577867 Q gi|254780361|r 27 YVEDKKSGEL------------RRPHHVDMKTGLY 49 (61) Q Consensus 27 l~~c~~cG~~------------~~~H~vc~~cG~Y 49 (61) -..|++|+.. ......||.||-. T Consensus 78 ~~~c~~~~~~~~~~~~~~~~~~~~~~~~c~~cg~~ 112 (166) T 3ir9_A 78 TTKCSVCGYENKWTRRWKPGEPAPAAGNCPKCGSS 112 (166) T ss_dssp EEEESSSSCEEEEEECCCC--CCCCCCBCTTTCCB T ss_pred EEECCCCCCEEEEEEECCCCCCCCCCCCCCCCCCC T ss_conf 99758987447787613542233334568544630 No 48 >2nn6_I 3'-5' exoribonuclease CSL4 homolog; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2 Probab=21.64 E-value=28 Score=15.80 Aligned_cols=30 Identities=13% Similarity=-0.087 Sum_probs=21.9 Q ss_pred EECCCCCCEEE---EEEEECCCCCCCCEEEEEE Q ss_conf 88789978244---0464257786768796434 Q gi|254780361|r 28 VEDKKSGELRR---PHHVDMKTGLYRGRQVFVL 57 (61) Q Consensus 28 ~~c~~cG~~~~---~H~vc~~cG~YkGr~Vi~~ 57 (61) ..|+.|+.+.. ..-.|+.||+.--|+|-.+ T Consensus 170 A~c~~c~~~l~~~~~~m~C~~cg~~E~RKvak~ 202 (209) T 2nn6_I 170 AHSESGIQMVPISWCEMQCPKTHTKEFRKVARV 202 (209) T ss_dssp CBCSSSCBCEEEETTEEECTTTTCCBCCCC--- T ss_pred EECCCCCCCEEECCCEEECCCCCCEECCCCCCC T ss_conf 988899851776699889999999685100477 No 49 >3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A Probab=21.33 E-value=42 Score=14.87 Aligned_cols=23 Identities=17% Similarity=0.128 Sum_probs=13.6 Q ss_pred CEEECCCCCCEEEE---EEEECCCCC Q ss_conf 37887899782440---464257786 Q gi|254780361|r 26 AYVEDKKSGELRRP---HHVDMKTGL 48 (61) Q Consensus 26 ~l~~c~~cG~~~~~---H~vc~~cG~ 48 (61) ..+.||-||..-.+ ..+|+.|+. T Consensus 286 ~~v~Cp~CgA~y~~~~kG~lC~vC~v 311 (325) T 3mv2_A 286 PSVSDPLTGSKYVITEKDKIDRIAMI 311 (325) T ss_dssp CEEECTTTCCEEEGGGTTSBCSSSSC T ss_pred CCCCCCCCCCEECHHHCCCCCCCCCC T ss_conf 97141797886256348996887775 No 50 >3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens} Probab=20.83 E-value=17 Score=16.97 Aligned_cols=22 Identities=23% Similarity=0.138 Sum_probs=13.4 Q ss_pred CEEECCCCCC----EEEEEEEECCCCC Q ss_conf 3788789978----2440464257786 Q gi|254780361|r 26 AYVEDKKSGE----LRRPHHVDMKTGL 48 (61) Q Consensus 26 ~l~~c~~cG~----~~~~H~vc~~cG~ 48 (61) ....|..|+. ..+.|| |..||. T Consensus 374 ~~~~C~~C~~~F~~~~Rrhh-Cr~CG~ 399 (434) T 3mpx_A 374 HVMMCMNCGCDFSLTLRRHH-CHACGK 399 (434) T ss_dssp --------------------------- T ss_pred CCCCCCCCCCCCCCCCCCCC-CCCCCC T ss_conf 78718899995577243605-788988 No 51 >2a6h_D DNA-directed RNA polymerase beta' chain; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus} SCOP: e.29.1.2 PDB: 1smy_D* 1zyr_D* 1iw7_D* 2a69_D* 2a6e_D 2a68_D* 2be5_D* 2cw0_D 2o5i_D 2o5j_D* 2ppb_D* 3dxj_D* 3eql_D* 1ynj_D* 1l9z_D 1l9u_D* 1ynn_D* 2auj_D Probab=20.80 E-value=17 Score=16.91 Aligned_cols=19 Identities=26% Similarity=0.429 Sum_probs=12.0 Q ss_pred ECCCCCCEEEEEE---EECCCCC Q ss_conf 8789978244046---4257786 Q gi|254780361|r 29 EDKKSGELRRPHH---VDMKTGL 48 (61) Q Consensus 29 ~c~~cG~~~~~H~---vc~~cG~ 48 (61) +| .||.++..-. +|..||- T Consensus 57 eC-~CGkyk~~~~~g~~C~~CgV 78 (1524) T 2a6h_D 57 EC-ACGKYKRQRFEGKVCERCGV 78 (1524) T ss_dssp CC-SSCSSCSSTTTTCCCSSSCC T ss_pred EE-ECCCCCCCCCCCEECCCCCC T ss_conf 67-38776552649827799987 No 52 >3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Probab=20.46 E-value=36 Score=15.25 Aligned_cols=23 Identities=17% Similarity=0.079 Sum_probs=17.0 Q ss_pred CEEECCCCCCEEEE---EEEECCCCC Q ss_conf 37887899782440---464257786 Q gi|254780361|r 26 AYVEDKKSGELRRP---HHVDMKTGL 48 (61) Q Consensus 26 ~l~~c~~cG~~~~~---H~vc~~cG~ 48 (61) ..+.||=||..-.+ ..+|+.|+. T Consensus 277 ~~v~Cp~cgA~y~~~~kG~lC~vC~l 302 (320) T 3mkr_B 277 PVEKCPLSGACYSPEFKGQICKVTTV 302 (320) T ss_dssp CCEECTTTCCEECGGGTTSBCTTTSS T ss_pred CCCCCCCCCCEECHHHCCCCCCCCCC T ss_conf 97045897886257448998887876 No 53 >2l0z_A Glycoprotein G2; zinc-binding domain, virus envelope glycoprotein, GPC, junin arenavirus, viral protein; NMR {Junin virus} Probab=20.02 E-value=19 Score=16.72 Aligned_cols=14 Identities=29% Similarity=0.413 Sum_probs=9.2 Q ss_pred EEEE-----EECCCCCCCCE Q ss_conf 4046-----42577867687 Q gi|254780361|r 38 RPHH-----VDMKTGLYRGR 52 (61) Q Consensus 38 ~~H~-----vc~~cG~YkGr 52 (61) +||| +| +||+|+.. T Consensus 14 kPHRL~~~g~C-sCG~y~~~ 32 (42) T 2l0z_A 14 LPHRLNSLGGC-RCGKYPNL 32 (42) T ss_dssp TTSCCCTTSSB-TTTTBCCC T ss_pred CCEEECCCCEE-CCCCCCCC T ss_conf 97060678507-25422688 Done!