RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254780361|ref|YP_003064774.1| ribosomal protein L32
[Candidatus Liberibacter asiaticus str. psy62]
         (61 letters)



>gnl|CDD|145114 pfam01783, Ribosomal_L32p, Ribosomal L32p protein family. 
          Length = 56

 Score = 68.0 bits (167), Expect = 5e-13
 Identities = 27/54 (50%), Positives = 32/54 (59%)

Query: 2  AVPKRKTSPSKRGMRRSADALTPPAYVEDKKSGELRRPHHVDMKTGLYRGRQVF 55
          AVPKRKTS S++  RR+   L  P  VE    GEL+ PH V    G Y+GRQV 
Sbjct: 1  AVPKRKTSKSRKRKRRAHWKLKAPNLVECPNCGELKLPHRVCPSCGYYKGRQVI 54


>gnl|CDD|30681 COG0333, RpmF, Ribosomal protein L32 [Translation, ribosomal
          structure and biogenesis].
          Length = 57

 Score = 64.9 bits (158), Expect = 5e-12
 Identities = 31/54 (57%), Positives = 35/54 (64%)

Query: 1  MAVPKRKTSPSKRGMRRSADALTPPAYVEDKKSGELRRPHHVDMKTGLYRGRQV 54
          MAVPKRKTS S+R MRRS DAL  P        GE + PH V +K G Y+GRQV
Sbjct: 1  MAVPKRKTSKSRRRMRRSHDALKAPTLSVCPNCGEYKLPHRVCLKCGYYKGRQV 54


>gnl|CDD|177070 CHL00152, rpl32, ribosomal protein L32; Validated.
          Length = 53

 Score = 29.6 bits (67), Expect = 0.18
 Identities = 10/18 (55%), Positives = 16/18 (88%)

Query: 1  MAVPKRKTSPSKRGMRRS 18
          MAVPK++TS SK+ +R++
Sbjct: 1  MAVPKKRTSKSKKRIRKN 18


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.316    0.131    0.376 

Gapped
Lambda     K      H
   0.267   0.0764    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 712,140
Number of extensions: 25969
Number of successful extensions: 49
Number of sequences better than 10.0: 1
Number of HSP's gapped: 49
Number of HSP's successfully gapped: 4
Length of query: 61
Length of database: 6,263,737
Length adjustment: 33
Effective length of query: 28
Effective length of database: 5,550,640
Effective search space: 155417920
Effective search space used: 155417920
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.4 bits)