RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780361|ref|YP_003064774.1| ribosomal protein L32 [Candidatus Liberibacter asiaticus str. psy62] (61 letters) >2zjr_Z 50S ribosomal protein L32; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.5 PDB: 1j5a_M* 1jzy_M* 1jzz_M* 1k01_M* 1nkw_Z 1ond_Z* 1sm1_Z* 1yl3_5 2b66_5 2b9n_5 2b9p_5 2zjp_Y* 2zjq_Z 1jzx_M 3cf5_Y* 3dll_Y* 1nwy_Z* 1nwx_Z* 1xbp_Z* 1pnu_Z ... Length = 60 Score = 78.9 bits (195), Expect = 3e-16 Identities = 26/54 (48%), Positives = 30/54 (55%) Query: 1 MAVPKRKTSPSKRGMRRSADALTPPAYVEDKKSGELRRPHHVDMKTGLYRGRQV 54 VPK+KTS SKR MRRS ALT P E + + HH+ G Y GRQV Sbjct: 4 HPVPKKKTSKSKRDMRRSHHALTAPNLTECPQCHGKKLSHHICPNCGYYDGRQV 57 >2j01_5 50S ribosomal protein L32; ribosome, tRNA, paromomycin, mRNA, translation; 2.8A {Thermus thermophilus} SCOP: g.41.8.5 PDB: 2hgq_4 2hgj_4 2hgu_4 2j03_5 2jl6_5 2jl8_5 2v47_5 2v49_5 2wdi_5 2wdj_5 2wdl_5 2wdn_5 2wh2_5 2wh4_5 3hux_5 3huz_5 3f1f_5 1vsp_Y 1vsa_Y 3d5d_5 ... Length = 60 Score = 77.4 bits (191), Expect = 8e-16 Identities = 24/54 (44%), Positives = 32/54 (59%) Query: 1 MAVPKRKTSPSKRGMRRSADALTPPAYVEDKKSGELRRPHHVDMKTGLYRGRQV 54 VPK+KTS ++R RRS ALTPP V + ++ PH V + G Y GR+V Sbjct: 4 HPVPKKKTSKARRDARRSHHALTPPTLVPCPECKAMKPPHTVCPECGYYAGRKV 57 >3i1n_0 50S ribosomal protein L32; ribosome structure, protein-RNA complex, acetylation, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA- binding, methylation; 3.19A {Escherichia coli k-12} PDB: 1vs8_0 3e1b_T 3e1d_T 1vs6_0 3i1p_0 3i1r_0 3i1t_0 3i20_0 3i22_0 2qam_0* 1p85_Z 1p86_Z 2awb_0 2aw4_0 2i2v_0 2j28_0 2i2t_0* 2qao_0* 2qba_0* 2qbc_0* ... Length = 57 Score = 68.9 bits (169), Expect = 2e-13 Identities = 29/56 (51%), Positives = 34/56 (60%), Gaps = 2/56 (3%) Query: 1 MAVPKRKTSPSKRGMRRSADALT-PPAYVEDKKSGELRRPHHVDMKTGLYRGRQVF 55 MAV + K + SKRGMRRS DALT + DK SGE HH+ G YRGR+V Sbjct: 1 MAVQQNKPTRSKRGMRRSHDALTAVTSLSVDKTSGEKHLRHHIT-ADGYYRGRKVI 55 >3ofq_0 50S ribosomal protein L32; protein biosynthesis, ribosomes, RNA, tRNA, transfer, antibi EXIT, peptidyl, ribosomal subunit, large; 3.10A {Escherichia coli} PDB: 1p85_Z 1p86_Z 2awb_0 2aw4_0 2i2v_0 2j28_0 2i2t_0* 2qao_0* 2qba_0* 2qbc_0* 2qbe_0 2qbg_0 2qbi_0* 2qbk_0* 2qov_0 2qox_0 2qoz_0* 2qp1_0* 2rdo_0 2vhm_0 ... Length = 56 Score = 67.7 bits (166), Expect = 6e-13 Identities = 28/55 (50%), Positives = 33/55 (60%), Gaps = 2/55 (3%) Query: 2 AVPKRKTSPSKRGMRRSADALT-PPAYVEDKKSGELRRPHHVDMKTGLYRGRQVF 55 AV + K + SKRGMRRS DALT + DK SGE HH+ G YRGR+V Sbjct: 1 AVQQNKPTRSKRGMRRSHDALTAVTSLSVDKTSGEKHLRHHIT-ADGYYRGRKVI 54 >3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, transcription factor, DNA-binding, DNA-directed RNA polymerase; 4.30A {Saccharomyces cerevisiae} Length = 197 Score = 31.0 bits (70), Expect = 0.061 Identities = 11/42 (26%), Positives = 15/42 (35%), Gaps = 12/42 (28%) Query: 7 KTSPS--KRGMRRSAD----------ALTPPAYVEDKKSGEL 36 T S KR RR + + PP VE G++ Sbjct: 2 MTRESIDKRAGRRGPNLNIVLTCPECKVYPPKIVERFSEGDV 43 >3bbo_2 Ribosomal protein L32; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} Length = 57 Score = 28.6 bits (64), Expect = 0.40 Identities = 9/18 (50%), Positives = 15/18 (83%) Query: 1 MAVPKRKTSPSKRGMRRS 18 MAVPK++TS K+ +R++ Sbjct: 1 MAVPKKRTSIYKKRIRKN 18 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.316 0.131 0.376 Gapped Lambda K H 0.267 0.0729 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 499,410 Number of extensions: 16646 Number of successful extensions: 32 Number of sequences better than 10.0: 1 Number of HSP's gapped: 28 Number of HSP's successfully gapped: 6 Length of query: 61 Length of database: 5,693,230 Length adjustment: 32 Effective length of query: 29 Effective length of database: 4,917,422 Effective search space: 142605238 Effective search space used: 142605238 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 50 (23.0 bits)