BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780361|ref|YP_003064774.1| ribosomal protein L32
[Candidatus Liberibacter asiaticus str. psy62]
         (61 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780361|ref|YP_003064774.1| ribosomal protein L32 [Candidatus Liberibacter asiaticus str.
          psy62]
          Length = 61

 Score =  124 bits (312), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 61/61 (100%), Positives = 61/61 (100%)

Query: 1  MAVPKRKTSPSKRGMRRSADALTPPAYVEDKKSGELRRPHHVDMKTGLYRGRQVFVLKTK 60
          MAVPKRKTSPSKRGMRRSADALTPPAYVEDKKSGELRRPHHVDMKTGLYRGRQVFVLKTK
Sbjct: 1  MAVPKRKTSPSKRGMRRSADALTPPAYVEDKKSGELRRPHHVDMKTGLYRGRQVFVLKTK 60

Query: 61 E 61
          E
Sbjct: 61 E 61


>537021.9.peg.912_1 
          Length = 47

 Score = 23.5 bits (49), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 10/21 (47%), Positives = 13/21 (61%)

Query: 30 DKKSGELRRPHHVDMKTGLYR 50
          +++S   R PHH D  T LYR
Sbjct: 2  NRESFRTRLPHHKDPNTALYR 22


>gi|254780142|ref|YP_003064555.1| DNA-directed RNA polymerase subunit beta' [Candidatus
          Liberibacter asiaticus str. psy62]
          Length = 1398

 Score = 21.6 bits (44), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 11/46 (23%), Positives = 21/46 (45%), Gaps = 6/46 (13%)

Query: 13 RGMRRSADALTPPAYVEDKKSGELRRPHHVDMKT------GLYRGR 52
          RG      ++  PA +     GE+++P  ++ +T      GL+  R
Sbjct: 16 RGFDSVRISIASPAKIASLSYGEIKKPETINYRTFKPERDGLFCAR 61


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.316    0.131    0.376 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,175
Number of Sequences: 1233
Number of extensions: 969
Number of successful extensions: 4
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 61
length of database: 328,796
effective HSP length: 33
effective length of query: 28
effective length of database: 288,107
effective search space:  8066996
effective search space used:  8066996
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (20.7 bits)
S2: 31 (16.5 bits)