HHsearch alignment for GI: 254780363 and conserved domain: COG2871
>COG2871 NqrF Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrF [Energy production and conversion].
Probab=99.97 E-value=1.6e-30 Score=223.84 Aligned_cols=233 Identities=18% Similarity=0.303 Sum_probs=169.5
Q ss_pred CCCCCCCCCCCCE-----EEEEEEECCCCEEEEEEECC--CCCCCCCCCEEEEEEEC-----------------------
Q ss_conf 7774436653106-----89888847998699998077--89983997179999843-----------------------
Q gi|254780363|r 3 DVSPKLPVNVYCE-----SVISIKHYTDRLFRFCITRP--KSFRFRSGEFVMLGLMV----------------------- 52 (264)
Q Consensus 3 ~~~~~~p~~~~~~-----~V~~v~~~t~~~~~~~l~~~--~~~~f~~GQ~v~i~~~~----------------------- 52 (264)
T Consensus 120 dm~levpEe~fgvkkWectViSNdN~ATFIKEL~laip~g~~vpFraGGyiQie~pph~v~y~Dfdi~~eY~~DWdkf~l 199 (410)
T COG2871 120 DMDLEVPEEVFGVKKWECTVISNDNKATFIKELKLAIPEGEEVPFRAGGYIQIEAPPHTVNYKDFDIPPEYHEDWDKFNL 199 (410)
T ss_pred CCEEECHHHHCCCCCEEEEEEECCCHHHHHHHHEEECCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHCCHHHHCH
T ss_conf 62252427760745315899707756545554125079998366478866999538733031246798467453355231
Q ss_pred ------CCEEEEEEEEECCCCCCCCEEEEEEEE----------CCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCC
Q ss_conf ------985887665422857688605899994----------3888566100123885100257887321643223586
Q gi|254780363|r 53 ------NGRRISRAYSMASPCWDDKLEFFSIKV----------EQGPLTTHLQNIQPGDTILLHKKSTGTLVLDALIPGN 116 (264)
Q Consensus 53 ------~g~~~~R~YSiaS~p~~~~le~~i~~v----------~~G~~S~~L~~l~~Gd~i~i~~~p~G~f~~d~~~~~~ 116 (264)
T Consensus 200 f~~vs~v~e~~~rAYSmAsYPeE~giI~~NvRIAtPPp~~~~~PpG~mSSyi~sLKpGDKvtisG-PfGEfFaKd--tda 276 (410)
T COG2871 200 FRYVSKVDEPIIRAYSMASYPEEKGIIKLNVRIATPPPRNPDAPPGQMSSYIWSLKPGDKVTISG-PFGEFFAKD--TDA 276 (410)
T ss_pred HEEECCCCHHHHHHHHHHCCHHHCCEEEEEEEECCCCCCCCCCCCCCEEEEEEEECCCCEEEEEC-CCHHHHHCC--CCC
T ss_conf 00121453687877664148123474799888527999899999412110478506997479836-614543126--887
Q ss_pred EEEEEECCCCHHHHHHH-HHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCC--C
Q ss_conf 69999758672778998-87634103578579999519988987335668989864457774058843898204544--4
Q gi|254780363|r 117 RLYLFSTGTGIAPFVSV-IRDPGTYEKFDEVIVTQTCRQVVELQYGIDVMHEISQDEILKDLIGQKLKFYRTVTQED--Y 193 (264)
Q Consensus 117 ~lilIAgGtGItP~~si-i~~~~~~~~~~~i~L~~g~R~~~dl~y~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~e~--~ 193 (264)
T Consensus 277 emvFigGGAGmapmRSHIfDqL~rlhSkRkis~WYGARS~rE~fY~Ed~d~L~ae--------~pNF~wH~aLSdplpED 348 (410)
T COG2871 277 EMVFIGGGAGMAPMRSHIFDQLKRLHSKRKISFWYGARSLREMFYQEDFDQLQAE--------NPNFHWHLALSDPLPED 348 (410)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHHH--------CCCCEEEEEECCCCCCC
T ss_conf 3699835867671177899999865036525666220077777778778888753--------89817999736888766
Q ss_pred CCCCCCCCCCCCCHHHHHCCCCCCCHHCCEEEEECCHHHHHHHHHHHHHCCCCCC
Q ss_conf 4465677543110478852899887313789996898999999999998698531
Q gi|254780363|r 194 LYKGRITNHILSGEFYRNMDLSPLNPDTDRIMICGSPTMIVDMKDLLIAKKFREG 248 (264)
Q Consensus 194 ~~~grit~~i~~g~l~~~~~~~~~~~~~~~vyiCGpp~Mi~~v~~~L~~~G~~~~ 248 (264)
T Consensus 349 nW~g~-TgFihn-v~~en~Lk~h~aPEDceyYmCGPp~mNasvikmL~dlGVE~e 401 (410)
T COG2871 349 NWDGY-TGFIHN-VLYENYLKDHEAPEDCEYYMCGPPLMNASVIKMLKDLGVERE 401 (410)
T ss_pred CCCCC-HHHHHH-HHHHHHHHCCCCCHHEEEEEECCCHHHHHHHHHHHHCCCCCC
T ss_conf 85442-128999-987635315998013057751750111899999886196400