HHsearch alignment for GI: 254780363 and conserved domain: PRK00054
>PRK00054 dihydroorotate dehydrogenase electron transfer subunit; Reviewed.
Probab=100.00 E-value=8.2e-31 Score=225.82 Aligned_cols=200 Identities=21% Similarity=0.334 Sum_probs=152.6
Q ss_pred CCCCEEEEEEEECCCCEEEEEEECCCCCCCCCCCEEEEEEECCCEEEEEEEEECCCCCCCCEEEEEEEECCCCCCCCCCC
Q ss_conf 53106898888479986999980778998399717999984398588766542285768860589999438885661001
Q gi|254780363|r 11 NVYCESVISIKHYTDRLFRFCITRPKSFRFRSGEFVMLGLMVNGRRISRAYSMASPCWDDKLEFFSIKVEQGPLTTHLQN 90 (264)
Q Consensus 11 ~~~~~~V~~v~~~t~~~~~~~l~~~~~~~f~~GQ~v~i~~~~~g~~~~R~YSiaS~p~~~~le~~i~~v~~G~~S~~L~~ 90 (264)
T Consensus 3 ~p~~~~Iv~~~~~~~~i~~l~l~~~--~~~~PGQFv~l~~~~~~~~l~rP~Si~~~-~~~~~~i~v~~v--G~gT~~l~~ 77 (248)
T PRK00054 3 KPENMKIVENKEIAPNIYTLVLDGD--FVFKPGQFVMVWVWDDPGLLERPISISDI-DKNENTILYRAV--GEGTKKLSK 77 (248)
T ss_pred CCEEEEEEEEEEECCCEEEEEECCC--CCCCCCCEEEEEECCCCCCCCEEEEEEEC-CCCEEEEEEEEE--CHHHHHHHC
T ss_conf 7704799999995799799998466--87799977999978889844364199963-898589999998--879999961
Q ss_pred CCCCCEEECCCCCCCC-CCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHH
Q ss_conf 2388510025788732-164322358669999758672778998876341035785799995199889873356689898
Q gi|254780363|r 91 IQPGDTILLHKKSTGT-LVLDALIPGNRLYLFSTGTGIAPFVSVIRDPGTYEKFDEVIVTQTCRQVVELQYGIDVMHEIS 169 (264)
Q Consensus 91 l~~Gd~i~i~~~p~G~-f~~d~~~~~~~lilIAgGtGItP~~sii~~~~~~~~~~~i~L~~g~R~~~dl~y~~~l~~~~~ 169 (264)
T Consensus 78 l~~Gd~l~v~G-PlGngf~~~~--~~~~~llVaGGiGiAPl~~l~~~l~--~~~~~v~~i~G~r~~~~l~~~~el~~~-- 150 (248)
T PRK00054 78 LKEGDELDIRG-PLGNGFDLEK--IGGKVLLVGGGIGVAPLYELAKQLK--AKGVEVTTVLGARTKDEVIFEDEFEKY-- 150 (248)
T ss_pred CCCCCEEEEEC-CCCCCCCCCC--CCCEEEEEECCCCCCCHHHHHHHHH--HCCCCEEEEEECCCHHHCCHHHHHHHH--
T ss_conf 88999897452-5688723677--8961999967674576899999999--729977999975887981179999865--
Q ss_pred HHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCHHCCEEEEECCHHHHHHHHHHHHHCCC
Q ss_conf 6445777405884389820454444465677543110478852899887313789996898999999999998698
Q gi|254780363|r 170 QDEILKDLIGQKLKFYRTVTQEDYLYKGRITNHILSGEFYRNMDLSPLNPDTDRIMICGSPTMIVDMKDLLIAKKF 245 (264)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~s~e~~~~~grit~~i~~g~l~~~~~~~~~~~~~~~vyiCGpp~Mi~~v~~~L~~~G~ 245 (264)
T Consensus 151 ----------~~~~i--~tddGs~G~~G~vt~~l~~-----------~~~~~d~v~~cGP~~Mmk~v~~~~~~~~~ 203 (248)
T PRK00054 151 ----------GDVYV--ATDDGSYGFKGFVTDVLDE-----------LDLDYDAIYSCGPEIMMKKVVEILKEKKV 203 (248)
T ss_pred ----------CCEEE--EECCCCCCCCCEECHHHHH-----------CCCCCCEEEEECCHHHHHHHHHHHHHCCC
T ss_conf ----------47679--8067867665171031232-----------25686899996998999999999875599