HHsearch alignment for GI: 254780363 and conserved domain: cd06186
>cd06186 NOX_Duox_like_FAD_NADP NADPH oxidase (NOX) catalyzes the generation of reactive oxygen species (ROS) such as superoxide and hydrogen peroxide. ROS were originally identified as bactericidal agents in phagocytes, but are now also implicated in cell signaling and metabolism. NOX has a 6-alpha helix heme-binding transmembrane domain fused to a flavoprotein with the nucleotide binding domain located in the cytoplasm. Duox enzymes link a peroxidase domain to the NOX domain via a single transmembrane and EF-hand Ca2+ binding sites. The flavoprotein module has a ferredoxin like FAD/NADPH binding domain. In classical phagocytic NOX2, electron transfer occurs from NADPH to FAD to the heme of cytb to oxygen leading to superoxide formation.
Probab=99.95 E-value=2.1e-26 Score=196.33 Aligned_cols=186 Identities=22% Similarity=0.386 Sum_probs=131.8
Q ss_pred CCEEEEEEECCCCCCCCCCCEEEEEEECC-CEEEEEEEEECCCCCC--CCEEEEEEEECCCCCCCCC-CCCCC----CC-
Q ss_conf 98699998077899839971799998439-8588766542285768--8605899994388856610-01238----85-
Q gi|254780363|r 25 DRLFRFCITRPKSFRFRSGEFVMLGLMVN-GRRISRAYSMASPCWD--DKLEFFSIKVEQGPLTTHL-QNIQP----GD- 95 (264)
Q Consensus 25 ~~~~~~~l~~~~~~~f~~GQ~v~i~~~~~-g~~~~R~YSiaS~p~~--~~le~~i~~v~~G~~S~~L-~~l~~----Gd- 95 (264)
T Consensus 10 ~~~~~l~i~~~~~~~~~pGq~v~l~~p~~~~~~~~HPFTias~p~~~~~~l~~~I-r~~~G-~t~~l~~~~~~~~~~~~~ 87 (210)
T cd06186 10 SDVIRLTIPKPKPFKWKPGQHVYLNFPSLLSFWQSHPFTIASSPEDEQDTLSLII-RAKKG-FTTRLLRKALKSPGGGVS 87 (210)
T ss_pred CCEEEEEEECCCCCCCCCCCEEEEEECCCCCCCCCCCEEEECCCCCCCCEEEEEE-EECCC-CHHHHHHHHHHCCCCCCC
T ss_conf 9979999967998977899769999888897311377066506778997699999-95798-255899998617787774
Q ss_pred -EEECCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHH----CCCCCEEEEEECCCHHHHHHHHHHHHHHHH
Q ss_conf -100257887321643223586699997586727789988763410----357857999951998898733566898986
Q gi|254780363|r 96 -TILLHKKSTGTLVLDALIPGNRLYLFSTGTGIAPFVSVIRDPGTY----EKFDEVIVTQTCRQVVELQYGIDVMHEISQ 170 (264)
Q Consensus 96 -~i~i~~~p~G~f~~d~~~~~~~lilIAgGtGItP~~sii~~~~~~----~~~~~i~L~~g~R~~~dl~y~~~l~~~~~~ 170 (264)
T Consensus 88 ~~v~veG-PyG~~~~~~-~~~~~vlliaGG~GItp~ls~l~~l~~~~~~~~~~~~i~lvw~~R~~~~~~~~~~~l~~~~~ 165 (210)
T cd06186 88 LKVLVEG-PYGSSSEDL-LSYDNVLLVAGGSGITFVLPILRDLLRRSSKTSRTRRVKLVWVVRDREDLEWFLDELRAAQE 165 (210)
T ss_pred EEEEEEC-CCCCCCCCH-HHCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCHHHHHHHHHHHHHHHH
T ss_conf 4999987-999986562-11781899913757036899999998600246888419999997999999999999987662
Q ss_pred HHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCHHCCEEEEECCHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 44577740588438982045444446567754311047885289988731378999689899999999999869853156
Q gi|254780363|r 171 DEILKDLIGQKLKFYRTVTQEDYLYKGRITNHILSGEFYRNMDLSPLNPDTDRIMICGSPTMIVDMKDLLIAKKFREGSN 250 (264)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~s~e~~~~~grit~~i~~g~l~~~~~~~~~~~~~~~vyiCGpp~Mi~~v~~~L~~~G~~~~~~ 250 (264)
T Consensus 166 ~-----~~~~~~~i-------------y----------------------vT~v~~CGp~~m~~~~~~~~~~~~~~~--- 202 (210)
T cd06186 166 L-----EVDGEIEI-------------Y----------------------VTRVVVCGPPGLVDDVRNAVAKKGGTG--- 202 (210)
T ss_pred C-----CCCCCEEE-------------E----------------------EEEEEEECCHHHHHHHHHHHHHCCCCH---
T ss_conf 4-----44574499-------------9----------------------848999997999999999999849986---
Q ss_pred CCCCEEEEEE
Q ss_conf 7995099998
Q gi|254780363|r 251 SRPGTFVVER 260 (264)
Q Consensus 251 ~~~g~~~~E~ 260 (264)
T Consensus 203 ---~~~~~E~ 209 (210)
T cd06186 203 ---VEFHEES 209 (210)
T ss_pred ---HHEEEEE
T ss_conf ---6789864